fusion_id fusion_name geneID_fusionName sampleID rna_run_accession wgs_run_accession tissueType disease disease_stage program discordant_read_support breakpoint_support twin twinID multi_alt_fusion_allPred altSplicing_id_allPred multi_alt_fusion_valOnly altSplicing_id_onlyVal fiveprime_gene_name fiveprime_geneID fiveprime_gene_type fiveprime_gene_strand fiveprime_transcribed_strand hg38_fiveprime_gene_gtf_coordinates hg38_fiveprime_junction_coordinate hg19_fiveprime_gene_coordinates hg19_fiveprime_junction_coordinate threeprime_gene_name threeprime_geneID threeprime_gene_type threeprime_gene_strand threeprime_transcribed_strand hg38_threeprime_gene_gtf_coordinates hg38_threeprime_junction_coordinate hg19_threeprime_gene_coordinates hg19_threeprime_junction_coordinate hg38_fiveprime_breakpoint_sanityPassingPair hg38_threeprime_breakpoint_sanityPassingPair hg38_fiveprime_breakpoint_sanityFailingPair hg38_threeprime_breakpoint_sanityFailingPair hg19_fiveprime_breakpoint_sanityPassingPair hg19_threeprime_breakpoint_sanityPassingPair hg19_fiveprime_breakpoint_sanityFailingPair hg19_threeprime_breakpoint_sanityFailingPair fiveprime_transcriptionType threeprime_transcriptionType reading_frame_arriba fiveprime_junctionSite_arriba threeprime_junctionSite_arriba fusionType_arriba confidence_arriba tags_arriba retained_protein_domains_PfamArriba_arriba retained_protein_domains_PfamUCSC_arriba fiveprime_split_reads_arriba threeprime_split_reads_arriba discordant_mates_arriba fiveprime_coverage_arriba threeprime_coverage_arriba fiveprime_transcript_id_arriba threeprime_transcript_id_arriba fiveprime_direction_arriba threeprime_direction_arriba filters_arriba fusion_transcript_arriba peptide_sequence_arriba reading_frame_sf fiveprime_pfam_sf threeprime_pfam_sf annots_sf junctionReadCount_sf spanningFragCount_sf est_J_sf est_S_sf spliceType_sf largeAnchorSupport_sf ffpm_sf fiveprime_BreakDinuc_sf fiveprime_BreakEntropy_sf threeprime_BreakDinuc_sf threeprime_BreakEntropy_sf fiveprime_cds_ID_sf fiveprime_cds_range_sf threeprime_cds_ID_sf threeprime_cds_range_sf fusion_model_sf fusion_cds_sf fusion_transl_sf promoterSwapEventCandidate fiveprime_miRNA_host miRNA_fiveprime miRNA_fiveprime_coords threeprime_miRNA_host miRNA_threeprime miRNA_threeprime_coords threeprime_candidate_miRNA_host miRNA_downstream_threeprime miRNA_downstream_threeprime_coords fiveprime_kinase fiveprime_inFrame_kinase fiveprime_kinase_name fiveprime_kinase_group fiveprime_kinase_family fiveprime_kinase_subFamily fiveprime_kinase_uniprotID threeprime_kinase threeprime_inFrame_kinase threeprime_kinase_name threeprime_kinase_group threeprime_kinase_family threeprime_kinase_subFamily threeprime_kinase_uniprotID mitelmanFusion_match mitelman_tissueTypes mitelman_tissue_match tf_match tf_disease tf_tissueType tf_tissue_match tf_hg19_fiveprime_fusion_junction tf_fiveprime_exactOrNear_juncMatch tf_hg19_threeprime_fusion_junction tf_threeprime_exactOrNear_juncMatch tf_position_consistency tf_frame_prediction tcga_match tcga_cancer_type tcga_tissueType tcga_tissue_match tcga_hg38_fiveprime_fusion_junction tcga_fiveprime_exactOrNear_juncMatch tcga_hg38_threeprime_fusion_junction tcga_threeprime_exactOrNear_juncMatch cgc_fiveprime_gene cgc_fiveprime_name cgc_fiveprime_tier cgc_fiveprime_hallmark cgc_fiveprime_tumour_types_somatic cgc_fiveprime_tumour_types_germline cgc_fiveprime_cancer_syndrome cgc_fiveprime_tissue_type cgc_fiveprime_role_in_cancer cgc_fiveprime_mutation_types cgc_threeprime_gene cgc_threeprime_name cgc_threeprime_tier cgc_threeprime_hallmark cgc_threeprime_tumour_types_somatic cgc_threeprime_tumour_types_germline cgc_threeprime_cancer_syndrome cgc_threeprime_tissue_type cgc_threeprime_role_in_cancer cgc_threeprime_mutation_types 1 NDC1::GLIS1 ENSG00000058804.12::ENSG00000174332.6 OCUM1 SRR8615225 SRR8670736 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1 TRUE 1 TRUE 1 NDC1 ENSG00000058804.12 protein_coding - - chr1:53765478-53838463:- chr1:53787158:- chr1:54231151-54304136:- chr1:54252831:- GLIS1 ENSG00000174332.6 protein_coding - - chr1:53506237-53739164:- chr1:53510027:- chr1:53971910-54204837:- chr1:53975700:- chr1:53775822,chr1:53775826,chr1:53775824 chr1:53510137,chr1:53510136,chr1:53510136 NA NA chr1:54241495,chr1:54241499,chr1:54241497 chr1:53975810,chr1:53975809,chr1:53975809 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Nucleoporin_protein_Ndc1-Nup(89%)| Ndc1_Nup(71%)| 2 8 8 141 31 ENST00000371429.4 ENST00000628545.2 upstream downstream mismatches(2) ATAATGTATTTTTTCAGTAAG___CACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCCCAAATGCATATTTGGGCATTAGAAG___GTCTGTCGCACTTAGTAGCAGCATCATTTACAGAGGATAGATTTGGAGTTGTCCAGACGACACTACCAGCTATCCTTAATACTTTGTTGACACTGCAAGAG|GTTGGGGCCCGGCCTCCTCTCACCAATAGTCAGCCCCCTGAAGGGGCTGGGGCCACCGCCGCTGCCCCCATCCTCTCAGAGCCATTCTCCGGGGGGCCAGCCCTTCCCCACACTCCCCAGCAAGCCGTCCTACCCACCCTTCCAGAGCCCTCCACCCCCGCCTCTGCCCAGCCCACAAG___GTTACCAGGGCAGTTTCCACTCCATCCAGAGTTGCTTCCCC IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE|vgarppltnsqppegagataaapilsepfsggpalphtpqqavlptlpepstpasaqptrlpgqfplhpellp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2 NDC1::GLIS1 ENSG00000058804.12::ENSG00000174332.6 OCUM1 SRR8615225 SRR8670736 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1 TRUE 1 NDC1 ENSG00000058804.12 protein_coding - - chr1:53765478-53838463:- chr1:53787158:- chr1:54231151-54304136:- chr1:54252831:- GLIS1 ENSG00000174332.6 protein_coding - - chr1:53506237-53739164:- chr1:53506776:- chr1:53971910-54204837:- chr1:53972449:- chr1:53775822,chr1:53775826,chr1:53775824 chr1:53510137,chr1:53510136,chr1:53510136 NA NA chr1:54241495,chr1:54241499,chr1:54241497 chr1:53975810,chr1:53975809,chr1:53975809 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Nucleoporin_protein_Ndc1-Nup(89%)| Ndc1_Nup(71%)| 0 1 3 141 46 ENST00000371429.4 ENST00000628545.2 upstream downstream none TGATAATGTATTTTTTCAGTAAG___CACCCAGAGGCCTCCATTCAGGCTGTTTTTTCAGATGCaCAAATGCATATTTGGGCATTAGAAG___GTCTGTCGCACTTAGTAGCAGCATCATTTACAGAGGATAGATTTGGAGTTGTCCAGACGACACTACCAGCTATCCTTAATACTTTGTTGACACTGCAAGAG|GCTATGAGGCCCTGGCTGAGGCCTCATGCCCCACAGCGCTGCCACAGCAGCCATCTGAAGATGTGGTGTCCAGCGGCCCCGAGGACTGTGGCTTCTTCCCCAATGGAGCCTTTGACCACTGCCTGGGCCACATCCCCTCCATCTACACAGACACCTGAAGGAGCCCCCACATGCGCCTGCCC IMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQE|amrpwlrphapqrchsshlkmwcpaaprtvasspmeplttawatsppstqtpegaptcac NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17 XPO4::EEF1AKMT1 ENSG00000132953.18::ENSG00000150456.11 OCUM1 SRR8615225 SRR8670736 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4 FALSE NA XPO4 ENSG00000132953.18 protein_coding - - chr13:20777329-20903048:- chr13:20902670:- chr13:21351468-21477187:- chr13:21476809:- EEF1AKMT1 ENSG00000150456.11 protein_coding - - chr13:20728731-20773961:- chr13:20732121:- chr13:21302870-21348100:- chr13:21306260:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Probable_N6-adenine_methyltransferase(81%) |N6-adenineMlase(10%) 1 2 0 238 123 ENST00000255305.11 ENST00000382758.6 upstream downstream none CGCTGGGGCCCCCAGAAGTGATCGCTCAGCTGGAGAACGCGGCTAAAGTTCTGATG|AATCGCATGTGTGAGTGCCCCTAGTGTTTACCAGAAACTCAGAGAGCTGTGCAGAGAAAACTTTTCGATATACATCTT...GAATTGCTGCACATAGTTTTGACATCGTAATAGCAGATCCTCCCTATCTTTCGGAGGAATGTCTCAGAAAAACATCGGAAACCGTCAAGTACCTGACGC...CTCCTTGGAGTGAAGATGTGCACGTTTGTTCCAAGACACACCCGGAACTTGGCAAATGAGTTTCGCTGTTATGTGAATTATGATTCTGGGCTGGACTGTGG LGPPEVIAQLENAAKVLM|nrmcecp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 38 DDX23::LINC02406 ENSG00000174243.11::ENSG00000258144.2 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 9 TRUE 2 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48845574:- chr12:49223539-49246625:- chr12:49239357:- LINC02406 ENSG00000258144.2 lncRNA - - chr12:39087347-39145482:- chr12:39117232:- chr12:39481149-39539284:- chr12:39511034:- chr12:48844827,chr12:48844835 chr12:39139959,chr12:39139964 NA NA chr12:49238610,chr12:49238618 chr12:39533761,chr12:39533766 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none none none 237 204 300 1945 396 ENST00000308025.8 unknown upstream downstream duplicates(71),mismatches(40) GTTCAGACTCAGGGTG___ATGGCAGGAGAGCTGGCTGACAAAAAGGACCGTGATGCATCACCTTCCAAGGAGGAAAGGAAGCGATCACGGACTCCTGACAGAGAGCGGGATAGAGACCGGGACCGGAAGTCTTCCCCATCTAAAGATAGAAAGCGGCATCGTTCAAGGGATAGACGTCGAGGAGGCAGCCGTTCTCGCTCTCGTTCCCGTTCCAAATCTGCAGAAAG|GTCCAGCTTTGAATGAGTTTGATGTGGCAGAAACTTCAAATACATATCGGAAAATCAAGAATGCTGGAAATCATGCTACGCTTTCCTAGGCACAGCCTGAGGGAGGCTGCAGGCCTACAGGAGAATTGATGCACTTGGCTCAGTGCCACATCCAACATTAATGGAGGGAGAGTGTGGATTTGAGGAGGAGAGAGA MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAEr|ssfe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 39 DDX23::LINC02406 ENSG00000174243.11::ENSG00000258144.2 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 9 TRUE 2 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48845574:- chr12:49223539-49246625:- chr12:49239357:- LINC02406 ENSG00000258144.2 lncRNA - - chr12:39087347-39145482:- chr12:39092682:- chr12:39481149-39539284:- chr12:39486484:- chr12:48844827,chr12:48844835 chr12:39139959,chr12:39139964 NA NA chr12:49238610,chr12:49238618 chr12:39533761,chr12:39533766 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 192 247 238 1945 570 ENST00000308025.8 ENST00000659930.1 upstream downstream duplicates(128),mismatches(37) CTCCGCGACGTTGAGGCCGCGTTGGGCGGTTCAGACTCAGGGTG___ATGGCAGGAGAGCTGGCTGACAAAAAGGACCGTGATGCATCACCTTCCAAGGAGGAAAGGAAGCGATCACGGACTCCTGACAGAGAGCGGGATAGAGACCGGGACCGGAAGTCTTCCCCATCTAAAGATAGAAAGCGGCATCGTTCAAGGGATAGACGTCGAGGAGGCAGCCGTTCTCGCTCTCGTTCCCGTTCCAAATCTGCAGAAAG|GACAGGCTAGATGCTGACAGCTTGATCTTGGACCTCAAGTTTTCCGAATTGTGATAAATAGATGTTTATAATAAAGCCACCCAGTCTGTGGTATCTTGTTGTGATAGCTGGACCTGACTAATACACAGGGCATGTGGCAAGTTTAAGGGGAAGATGTCTTTCTGAAACATTTGAATCAATCAGAAGTTCTTTTGGAACAACTAAGGAAAGATGTCAG___CTTGCTGCCTCAAAATG MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAEr|tg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 40 DDX23::LINC02406 ENSG00000174243.11::ENSG00000258144.2 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 9 TRUE 2 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48845574:- chr12:49223539-49246625:- chr12:49239357:- LINC02406 ENSG00000258144.2 lncRNA - - chr12:39087347-39145482:- chr12:39095809:- chr12:39481149-39539284:- chr12:39489611:- chr12:48844827,chr12:48844835 chr12:39139959,chr12:39139964 NA NA chr12:49238610,chr12:49238618 chr12:39533761,chr12:39533766 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none none none 4 7 263 1945 43 ENST00000308025.8 ENST00000659930.1 upstream downstream duplicates(24),mismatches(25) GCGACGGCTCCGCGACGTTGAGGCCGCGTTGGGCGGTTCAGACTCAGGGTG___ATGGCAGGAGAGCTGGCTGACAAAAAGGACCGTGATGCATCACCTTCCAAGGAGGAAAGGAAGCGATCACGGACTCCTGACAGAGAGCGGGATAGAGACCGGGACCGGAAGTCTTCCCCATCTAAAGATAGAAAGCGGCATCGTTCAAGGGATAGACGTCGAGGAGGCAGCCGTTCTCGCTCTCGTTCCCGTTCCAAATCTGCAGAAAG|ATCACCAGGGAAGTGAAGGAAAGCCAGCAGCCACAGGCCTCACCCAGCTCCCACACAGCCTGCATCCTGAAAGGCTGGTCTCACTCCTACTGTGCTCCTGCAACAGCACCAAGTATATTTCCAGGCAACTGGTGAGCAGGGCTGAGAACTTGCCCCAGACCACAAGTCTCCCAGCTGAGAAAGCACAGCTCCTCAGTTGTCCCACAGAGCCTGCAGTGGCAATCCACCTCCTTCAAAAGTTCTGTGAATTCTCTCAGCTTTCCTG___GACAGGCTAGATGCTGACA MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAEr|spgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 41 DDX23::LINC02406 ENSG00000174243.11::ENSG00000258144.2 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 9 TRUE 2 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48845574:- chr12:49223539-49246625:- chr12:49239357:- LINC02406 ENSG00000258144.2 lncRNA - - chr12:39087347-39145482:- chr12:39093541:- chr12:39481149-39539284:- chr12:39487343:- chr12:48844827,chr12:48844835 chr12:39139959,chr12:39139964 NA NA chr12:49238610,chr12:49238618 chr12:39533761,chr12:39533766 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none none none 0 1 246 1945 35 ENST00000308025.8 ENST00000659930.1 upstream downstream duplicates(24),mismatches(29) GCGACGGCTCCGCGACGTTGAGGCCGCGTTGGGCGGTTCAGACTCAGGGTG___ATGGCAGGAGAGCTGGCTGACAAAAAGGACCGTGATGCATCACCTTCCAAGGAGGAAAGGAAGCGATCACGGACTCCTGACAGAGAGCGGGATAGAGACCGGGACCGGAAGTCTTCCCCATCTAAAGATAGAAAGCGGCATCGTTCAAGGGATAGACGTCGAGGAGGCAGCCGTTCTCGCTCTCGTTCCCGTTCCAAATCTGCAGAAAG|GAACACTTCATACAGGATGGGCCAATAATGCAAGGACTAATGGGACTTGGTAGAGAGACAACGGCATCCAATA...AATACACAGGGCATGTGGCAAGTTTAAGGGGAAGATGTCTTTCTGAAACATTTGAATCAATCAGAAGTTCTTTTGGAACAACTAAGGAAAGATGTCAG___CTT MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAEr|ntsyrmgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 42 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 3 TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29115840:- chr17:27398140-27507416:- chr17:27442858:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PHD-finger(27%)|Myosin_head_(motor_domain)(61%),Myosin_tail(100%) PHD(0%)|IQ(100%),Myosin_head(67%),Myosin_tail_1(100%) 110 241 300 3559 1659 ENST00000332830.9 ENST00000527372.7 upstream downstream duplicates(69),low_entropy(3),mismatches(73) CGATCGTGTACGACTTGGACACATCAGGGGGGCTGATGGAG___CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGCAGTCGGAAGCCTGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG|CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAG___GCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCAC IVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCc|waqavcpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 43 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29116455:- chr17:27398140-27507416:- chr17:27443473:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none PHD-finger(27%)|Myosin_head_(motor_domain)(62%),Myosin_tail(100%) PHD(0%)|IQ(100%),Myosin_head(70%),Myosin_tail_1(100%) 11 95 300 3559 159 ENST00000332830.9 ENST00000527372.7 upstream downstream duplicates(36),low_entropy(38),mismatches(79) CCAAGACGATCGTGTACGACTTGGACACATCAGGGGGGCTGATGGAG___CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGCAGTCGGAAGCCTGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG|AAGCTGCTGAAG___CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAG___GCCCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 44 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 4 TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29114097:- chr17:27398140-27507416:- chr17:27441115:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PHD-finger(27%)|Myosin_head_(motor_domain)(41%),Myosin_tail(100%) PHD(0%)|IQ(100%),Myosin_head(57%),Myosin_tail_1(100%) 57 21 37 3559 2076 ENST00000332830.9 ENST00000527372.7 upstream downstream duplicates(14),mismatches(9) GGAG___CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGCAGTCGGAAGCCTGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG|GAGAACATCGAGCTGGCGTTTGACGACTTGGAACCCCCGACGGATGACTCTGTGGCTGCTGTGGACCAGGCCTCCCATCAGTCCCTG___GTCCGCTCGCTGGCCCGCACAGACGAGGCGAGGGGCCTGCTCTGGCTATTGGAAGAGGAGGCTCTGGTGCCAGG EQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCw|rtsswrlttwnprrmtlwllwtrppispwsarwpaqtrrgacsgywkrrlwcq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 45 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28949668:- chr17:27232268-27278789:- chr17:27276686:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29115840:- chr17:27398140-27507416:- chr17:27442858:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(61%),Myosin_tail(100%) PHD(1%)|IQ(100%),Myosin_head(67%),Myosin_tail_1(100%) 0 8 300 94 1659 ENST00000582853.5 ENST00000527372.7 upstream downstream duplicates(17),mismatches(35) CCCAGTGCCGCTTGCCTGCCCGCGCGCCCGCTGCCCTCGGGGCTCCTGCCCGGCCGGGATCTCCTCGGG|CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAG___GCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 46 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28949668:- chr17:27232268-27278789:- chr17:27276686:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29116455:- chr17:27398140-27507416:- chr17:27443473:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(62%),Myosin_tail(100%) PHD(1%)|IQ(100%),Myosin_head(70%),Myosin_tail_1(100%) 0 5 300 94 159 ENST00000582853.5 ENST00000527372.7 upstream downstream duplicates(16),low_entropy(1),mismatches(35) CCCAGTGCCGCTTGCCTGCCCGCGCGCCCGCTGCCCTCGGGGCTCCTGCCCGGCCGGGATCTCCTCGGG|AAGCTGCTGAAG___CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAG___GCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 47 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28944503:- chr17:27232268-27278789:- chr17:27271521:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29115840:- chr17:27398140-27507416:- chr17:27442858:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(61%),Myosin_tail(100%) PHD(22%)|IQ(100%),Myosin_head(67%),Myosin_tail_1(100%) 0 2 300 394 1659 ENST00000582853.5 ENST00000527372.7 upstream downstream duplicates(16),mismatches(34) CTGCCTTCCACCTCCAGTGCTG___AGTCTCACTCTGTTGCCCAGGCTAGAGTGCATTGGTGTGATCTCAGTTCACTGCAATCTCCGCCTTCCAGGTTCAAGTGATTCTCCTGCCTTACGTGTCATGTTGTCTTACTGGTCCACCTAAATATGGAAGATACG|CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAG___GCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 48 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28944503:- chr17:27232268-27278789:- chr17:27271521:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29116455:- chr17:27398140-27507416:- chr17:27443473:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(62%),Myosin_tail(100%) PHD(22%)|IQ(100%),Myosin_head(70%),Myosin_tail_1(100%) 0 1 300 394 159 ENST00000332830.9 ENST00000527372.7 upstream downstream duplicates(16),low_entropy(1),mismatches(35) GGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG___...TGTGATCTCAGTTCACTGCAATCTCCGCCTTCCAGGTTCAAGTGATTCTCCTGCCTTACGTGTCATGTTGTCTTACTGGTCCACCTAAATATGGAAGATACG|AAGCTGCTGAAG___CTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 49 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29115441:- chr17:27398140-27507416:- chr17:27442459:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(53%),Myosin_tail(100%) PHD(0%)|IQ(100%),Myosin_head(64%),Myosin_tail_1(100%) 1 1 101 3559 1856 ENST00000332830.9 ENST00000527372.7 upstream downstream duplicates(8),mismatches(20) AGAAAATGGAGACCAAGACGATCGTGTACGACTTGGACACATCAGGGGGGCTGATGGAG___CAAATCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGCAGTCGGAAGCCTGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTCCTGTGCTGCGACCACTGCCCGGCTGCCTTCCACCTCCAGTGCTG|GCCCGAAACTGAGTGCAC?GGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCACCCTTCTCGTCTCCCTGGTGAATAG___GGCTCTCAAGTCCAGCCAGCACTCACTCTGCTCCATGATGATTGTCGACACCCCGGGCTTCCAGAACCCTGAGCAGGG KMETKTIVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCw|petectgvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 50 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28949668:- chr17:27232268-27278789:- chr17:27276686:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29114097:- chr17:27398140-27507416:- chr17:27441115:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none PHD-finger(27%)|Myosin_head_(motor_domain)(41%),Myosin_tail(100%) PHD(1%)|IQ(100%),Myosin_head(57%),Myosin_tail_1(100%) 0 1 37 94 2076 ENST00000582853.5 ENST00000527372.7 upstream downstream duplicates(4),mismatches(8) CGGGGCTCCTGCCCGGCCGGGATCTCCTCGGG|GAGAACATCGAGCTGGCGTTTGACGACTTGGAACCCCCGACGGATGACTCTGTGGCTGCTGTGGACCAGGCCTCCCATCAGTCCCTG___GTCCGCTCGCTGGCCCGCACAGACGAGGCGAGGGGCCTGCTCTGGCTATTGGAAGAGGAGGCTCTGGTGCCAGGGGCCAGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 52 MYO18A::PHF12 ENSG00000196535.20::ENSG00000109118.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 11 FALSE NA MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29082316:- chr17:27398140-27507416:- chr17:27409334:- PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28944569:- chr17:27232268-27278789:- chr17:27271587:- chr17:29077055,chr17:29077063 chr17:28948019,chr17:28948025 NA NA chr17:27404073,chr17:27404081 chr17:27275037,chr17:27275043 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%)|PHD-finger(72%),PHD_finger_protein_12_MRG_binding_domain(100%) IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%)|PHD(77%),PHF12_MRG_bd(100%) 0 0 0 4095 388 ENST00000527372.7 ENST00000582853.5 upstream downstream inconsistently_clipped(1) CAAAAAACcAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAG|GTTCAAGTGATTCTCCTGCCTTACGTGTCATGTTGTCTTACTGGTCCACCTAAATATGGAAGATACG___tCTCCTGTGATCAGCTGAG KNqGPSKAASDDGSLKSSr|fk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 54 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 5 TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44741401:+ chr17:42785976-42829632:+ chr17:42818769:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense out-of-frame CDS/splice-site CDS translocation high none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 67 102 111 996 545 ENST00000361204.9 ENST00000393547.6 downstream upstream duplicates(25),low_entropy(1),mismatches(19) GCTAAGACCAGCGCCCGGGATGCGGCTCTGGCCTATCACCGGCTGCACCAGCTGCACATCACAG___GGAAGCTTCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGTGTGCCGTGAACCTGGCTGAATGTGCAGAGGAGAAGATCCCACCGAGCACACTGGTTGAGATCCATCTGACTGCTGCCATGGGGCTCAAGACCCGGTGTGGAGGCAAGCTGGGCTTCCTGGCC|ATGCAAGTCCCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACCAG___AGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGGAGCTCCATGTG___CATCTTCAGAGTGCCCAGCACCGGAG AKTSARDAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLA|mqvplrprrpwaactipenprmesqahdqlptpcpggrkatasavrrpsrssmcifrvpstg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 55 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 6 TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44747083:+ chr17:42785976-42829632:+ chr17:42824451:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 75 72 78 996 841 ENST00000361204.9 ENST00000393547.6 downstream upstream duplicates(18),mismatches(17) GGGATGCGGCTCTGGCCTATCACCGGCTGCACCAGCTGCACATCACAG___GGAAGCTTCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGTGTGCCGTGAACCTGGCTGAATGTGCAGAGGAGAAGATCCCACCGAGCACACTGGTTGAGATCCATCTGACTGCTGCCATGGGGCTCAAGACCCGGTGTGGAGGCAAGCTGGGCTTCCTGGCC|AGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGGAGCTCCATGTG___CATCTTCAGAGTGCCCAGCACCGGAGCTTTGCCCTGGAAGCCCATCTATATGCAGAAGTGGACAGGATCATTGCTCAGCTCAGCCACAGCTTTG DAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLA|riqgwrakptiscphhaqeeerllrvlsgglrgapcassecpapelcpgspsicrsgqdhcsaqpql NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 56 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44741336:+ chr17:42785976-42829632:+ chr17:42818704:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 3 7 112 996 84 ENST00000361204.9 ENST00000393547.6 downstream upstream duplicates(8),mismatches(9) GCTAAGACCAGCGCCCGGGATGCGGCTCTGGCCTATCACCGGCTGCACCAGCTGCACATCACAG___GGAAGCTTCCTGCAGGATCCGCCTGTTCCGATGTACACATGGCGTTGTGTGCCGTGAACCTGGCTGAATGTGCAGAGGAGAAGATCCCACCGAGCACACTGGTTGAGATCCATCTGACTGCTGCCATGGGGCTCAAGACCCGGTGTGGAGGCAAGCTGGGCTTCCTGGCC|GAAGTTTCGTCCTTTCCATCATCAGTTTAAATCCTTTCCTGAAATTTCTTTTCTTGGACCCAAAGATGCAAGTCCCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACCAG___AGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGG AKTSARDAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLA|evssfpssv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 57 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41886308:+ chr22:42229109-42303310:+ chr22:42282312:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44741336:+ chr17:42785976-42829632:+ chr17:42818704:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 2 3 139 70 84 ENST00000491541.1 ENST00000393547.6 downstream upstream duplicates(10),mismatches(12) GTCCTCAGGGAGCATAGTTGGCAAGGAATCTAGACAGCAGCCCTTCTTGAGCTTGACATTGATCTTCTCATGAGGAGGACTGGGCTCCAG___...CTTCCTATTCAT...CTTCCCTCGACAGATCTTCCTGGGACCAGGTCTTCAGGACAGTGTGAGCTAGG|GAAGTTTCGTCCTTTCCATCATCAGTTTAAATCCTTTCCTGAAATTTCTTTTCTTGGACCCAAAGATGCAAGTCCCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACCAG___AGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 58 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41886308:+ chr22:42229109-42303310:+ chr22:42282312:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44747083:+ chr17:42785976-42829632:+ chr17:42824451:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 2 0 92 70 841 ENST00000491541.1 ENST00000393547.6 downstream upstream duplicates(4),mismatches(10) TGGGAACTCTCAAATGGGTAATTCCCGGTCCTTGTTATCAGCTAGCTCACAACATGCTGACCTCAGGCTTTCTCTTACTCTAGCAGAAACAGGTATGTTTT...AAGGAATCTAGACAGCAGCCCTTCTTGAGCTTGACATTGATCTTCTCATGAGGAGGACTGGGCTCCAGGTGGGGAAAGAACCCCATCCTCACTTGTGGGCTAGACGACCTGGcAGTCCACAGACACTGAAGACACATCATTCTTCCTATTCATTTCAACCTTCCCTCGACAGATCTTCCTGGGACCAGGTCTTCAGGACAGTGTGAGCTAGG|AGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGGAGCTCCATGTG___CATCTTCAGAGTGCCCAGCACCGGAGCTTTGCCCTGGAAGCCCATCTATATGCAGAAGTGGACAGGATCATTGCTCAGCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 59 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44747085:+ chr17:42785976-42829632:+ chr17:42824453:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Helix-loop-helix_DNA-binding_domain(100%)|DBF_zinc_finger(100%) HLH(100%)|zf-DBF(100%) 0 0 0 996 841 ENST00000361204.9 ENST00000393547.6 downstream upstream mismatches(1) GGGGCTCAAGACCCGGTGTGGAGGCAAGCTGGGCTTCCTGGCC|AATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGtCCACACCATGCCCAGGAGGAA...TATGCAGtAGTtGtCAGGATCATTtgTCAGCTCAGCCACAGCTTTGCAGtCATCCCTTgCCAGGCTGGCCTtCCCAGGTGAGTGCCACGCTGGCAGGCACA GLKTRCGGKLGFLA|nprmesqahdqlstpcpgg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 60 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 7 TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41728201:- chr17:39873994-39890896:- chr17:39884453:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41817058:+ chr17:39968932-39979465:+ chr17:39973310:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none HAP1_N-terminal_conserved_region(80%)|EF_hand(100%),FKBP-type_peptidyl-prolyl_cis-trans_isomerase(92%) HAP1_N(84%)|EF-hand_5(100%),FKBP_C(70%) 65 85 72 908 834 ENST00000393939.6 ENST00000321562.9 upstream upstream duplicates(10),mismatches(11) CACTCTTGAGGATGAGGAACAGATGCTtATTCTGGAGTGTGTGGAGCAGTTTT___tGGAGGCCAGCCAACAGATGGCTGAGCTGTCGGAGGTGCTGGTGCTCAGGCTGGAAAACTATGAACGGCAGCAGCAGGAGGTCGCTCGGCTGCAGGCCCAGGTGCTGAAGCTGCAGCAGCGCTGCCGGATG|CTATGATCGCAACACCTTGGTGGCCATCGTGGTGGGTGTGGGGCGCCTCATCACTGGCATGGACCGAGGCCTCATGGGCATGTGTGTCAACGAGCGGCGACGCCTCATTGTGCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGG___CGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGTTCTGC TLEDEEQMLILECVEQFlEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRM|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 61 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 8 TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41727762:- chr17:39873994-39890896:- chr17:39884014:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41817058:+ chr17:39968932-39979465:+ chr17:39973310:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none HAP1_N-terminal_conserved_region(87%)|EF_hand(100%),FKBP-type_peptidyl-prolyl_cis-trans_isomerase(92%) HAP1_N(90%)|EF-hand_5(100%),FKBP_C(70%) 8 15 97 534 834 ENST00000310778.5 ENST00000321562.9 upstream upstream duplicates(3),mismatches(9) CGGCAGCAGCAGGAGGTCGCTCGGCTGCAGGCCCAGGTGCTGAAGCTGCAGCAGCGCTGCCGGATG___...TGAGTGGGTAGGCCTCAGATGGGGGTTCACTGGTTTTGGGTCCTTCgAGTATGGGGCTGAGACTGAAAAGTTGCAGAAGCAGCTGGCTTCGGAGAAGGAAATCCAGATGCAGCTCCAGGAAGAG|CTATGATCGCAACACCTTGGTGGCCATCGTGGTGGGTGTGGGGCGCCTCATCACTGGCATGGACCGAGGCCTCATGGGCATGTGTGTCAACGAGCGGCGACGCCTCATTGTGCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGG___CGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGTTCTGCTGGATGTGTGGAACAAGGAAGACACCG ewvglrwgftgfgsfeYGAETEKLQKQLASEKEIQMQLQEE|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 62 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41731493:- chr17:39873994-39890896:- chr17:39887745:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41817058:+ chr17:39968932-39979465:+ chr17:39973310:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none HAP1_N-terminal_conserved_region(68%)|EF_hand(100%),FKBP-type_peptidyl-prolyl_cis-trans_isomerase(92%) HAP1_N(39%)|EF-hand_5(100%),FKBP_C(70%) 1 0 18 971 834 ENST00000393939.6 ENST00000321562.9 upstream upstream duplicates(1),mismatches(3) GGAAGACCTGCAGTGTGCTCATCCCTGTGATGCCCCTAAGCT___GATTTCGCAGGAGGCATTGCTGCACCAGCACCACTGCCCACAGCTGGAAGCCTTGCAGGAGAAGCTGAGGCTGCTGGAGGAGGAGAATCATCAGCTGAGAGAAGAG___GCCTCTCAACTCGACACTCTTGAGGATGAGGAACAGATGCTtATTCTGGAGTGTGTGGAGCAGTTTT|CTATGATCGCAACACCTTGGTGGCCATCGTGGTGGGTGTGGGGCGCCTCATCACTGGCATGGACCGAGGCCTCATGGGCATGTGTGTCAACGAGCGGCGACGCCTCATTGTGCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGG___CGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGT EDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQF|smiatpwwpswwvwgasslawteaswacvstsgdaslclptwamgasawrgsfhrmppstsmw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 63 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41727762:- chr17:39873994-39890896:- chr17:39884014:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41818089:+ chr17:39968932-39979465:+ chr17:39974341:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none HAP1_N-terminal_conserved_region(87%)|EF_hand(100%),FKBP-type_peptidyl-prolyl_cis-trans_isomerase(79%) HAP1_N(90%)|EF-hand_5(100%),FKBP_C(62%) 0 1 17 534 989 ENST00000310778.5 ENST00000489591.5 upstream upstream mismatches(3) GCAGGGGGTGCCCTGAGTGGGTAGGCCTCAGATGGGGGTTCACTGGTTTTGGGTCCTTCgAGTATGGGGCTGAGACTGAAAAGTTGCAGAAGCAGCTGGCTTCGGAGAAGGAAATCCAGATGCAGCTCCAGGAAGAG|CGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGTTCTGCTGGATGTGTGGAACAAGGAAGACACCGTGCAGGTGAGCACATTGCTGCGCCCGCCCCACTGCCCCCGCATGGTCCAGGACGGCGACTTTGTCCGCTACCACTACAATGGCACCCTGCTGGACGGCACCTCCTTCGACACCAG___CTACAGTAAGGGCGGC rgcpewvglrwgftgfgsfeYGAETEKLQKQLASEKEIQMQLQEE|rgsfhrmppstsmwfcwmcgtrktpcr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 64 SPATS2::ENSG00000224905 ENSG00000123352.18::ENSG00000224905.8 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPATS2 ENSG00000123352.18 protein_coding + + chr12:49366584-49527425:+ chr12:49371290:+ chr12:49760367-49921208:+ chr12:49765073:+ ENSG00000224905 ENSG00000224905.8 lncRNA + - chr21:14027415-14144468:+ chr21:14060637:- chr21:15399736-15516789:+ chr21:15432958:- chr12:49384272 chr21:14088523 NA NA chr12:49778055 chr21:15460844 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 64 59 80 179 271 ENST00000552918.6 unknown downstream downstream duplicates(11),low_entropy(1),mismatches(4) GGAGGATCTCCTTTCCTCTTCTCAGACCCGGGAGCGTCCGGGACGCGGAGCCCGGAGCTGGGGCGACGAGGCGATTGCGGGGGCCTGGGCTAG___CTGCTGGCTACCAATATTCTACTTTCTGTCTCTATGAATGTGACTACCCTGGTTACCTCATAT|TCAAAGAAGATGGCCATGGAGACAGCAGCGTGGTTGGAGTGGTAGCAGGCCGCCATCAGCAAGAGCTGCTCCCTGCCCAGCTGCTGGAGGCTAGAGCCTGCGGCCCAGTGGCTTGCCTCACTGTGGCTGGTGGTGGTGGTAACAGAGACTGCAGCATGACCAGAGTG___GTCTGGCCATGCCTGAGAATGATGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 69 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 9 TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27261102:+ chr1:27561123-27635127:+ chr1:27587593:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286616:- chr18:46562757-46987717:- chr18:46812986:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Dyggve-Melchior-Clausen_syndrome_protein(60%) |Dymeclin(62%),Hid1(100%) 22 17 22 206 150 ENST00000319394.8 ENST00000675505.1 downstream downstream duplicates(1),low_entropy(1),mismatches(11) GGAAGAGACCTGACAG___GTAATTAAATGTGTATTTTGTGGACCTGGGCTTGGCTGGAATGCTCAGGGGTCCTGAAGATCCTATTATAGCTTCCTTCTGTTGAACCATTAAGAAAAGATGGCGAAAGTCAACATAACTAGAGACCTCATCCGTAGGCAGATCAAG|CAGGACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAG___ATAGCAGTCCTTTCCCCTCATCAATTCCACATGCCTTCCAG MAKVNITRDLIRRQIK|qdsglssh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 70 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 10 TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27261102:+ chr1:27561123-27635127:+ chr1:27587593:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286613:- chr18:46562757-46987717:- chr18:46812983:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Dyggve-Melchior-Clausen_syndrome_protein(60%) |Dymeclin(62%),Hid1(100%) 8 13 21 206 150 ENST00000319394.8 ENST00000675505.1 downstream downstream mismatches(9) CCTGACAG___GTAATTAAATGTGTATTTTGTGGACCTGGGCTTGGCTGGAATGCTCAGGGGTCCTGAAGATCCTATTATAGCTTCCTTCTGTTGAACCATTAAGAAAAGATGGCGAAAGTCAACATAACTAGAGACCTCATCCGTAGGCAGATCAAG|GACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAG___ATAGCAGTCCTTTCCCCTCATCAATTCCAC MAKVNITRDLIRRQIK|dsglssh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 71 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27261102:+ chr1:27561123-27635127:+ chr1:27587593:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49272303:- chr18:46562757-46987717:- chr18:46798673:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Dyggve-Melchior-Clausen_syndrome_protein(42%) |Dymeclin(59%),Hid1(91%) 1 0 3 206 187 ENST00000319394.8 ENST00000675505.1 downstream downstream mismatches(2) GTCGGGGGAAGAGACCTGACAG___GTAATTAAATGTGTATTTTGTGGACCTGGGCTTGGCTGGAATGCTCAGGGGTCCTGAAGATCCTATTATAGCTTCCTTCTGTTGAACCATTAAGAAAAGATGGCGAAAGTCAACATAACTAGAGACCTCATCCGTAGGCAGATCAAG|GTTTTACCAATTCTTGAGATTCTGTATCATGTTGAAGAAAGGAATTCACACCATGTGTATATGGCCCT?ATAATA?TGTT??T?CTTACGGAA?AT?ATGGCTTCAACAGATCCATTCATG MAKVNITRDLIRRQIK|VLPILEILYHVEERNSHHVYMALII???LTE??GFNRSIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 72 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27234951:+ chr1:27561123-27635127:+ chr1:27561442:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286613:- chr18:46562757-46987717:- chr18:46812983:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Dyggve-Melchior-Clausen_syndrome_protein(60%) |Dymeclin(62%),Hid1(100%) 0 1 2 96 150 ENST00000319394.8 ENST00000675505.1 downstream downstream mismatches(2) CGGGCGGAGGCGCTGTCCGaCCCCGGCCAGGCGCCGGGCGGGGAGCAaGGGAcGGGGCTAGAAaTGCTCtcGCCCCaCAGtCCCCTCCCCGGGATCCGCGCCCCCCcTCCCGGGAGAGGGGCCGCCCCCCCCGGACGGACATGGGCTCCTGAAGTTGCGCCGCTGCCGGTCGGGGGAAGAGACCTGACAG|GACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAG___GTTTTACCAATTCTTGAGATTCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 73 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27234951:+ chr1:27561123-27635127:+ chr1:27561442:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286616:- chr18:46562757-46987717:- chr18:46812986:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Dyggve-Melchior-Clausen_syndrome_protein(60%) |Dymeclin(62%),Hid1(100%) 1 0 2 96 150 ENST00000319394.8 ENST00000675505.1 downstream downstream mismatches(2) CGGGCGGAGGCGCTGTCCGaCCCCGGCCAGGCGCCGGGCGGGGAGCAaGGGAcGGGGCTAGAAaTGCTCtcGCCCCCCAGCCCCCTCCCCGGGATCCGCGCCCCCCcTCCCGGGAGAGGGGCCGCCCCCCCCGGACGGACATGGGCTCCTGAAGTTGCGCCGCTGCCGGTCGGGGGAAGAGACCTGACAG|CAGGACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAG___ATAGCAGTCCTTTCCCCTCATCAATTCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 74 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27234951:+ chr1:27561123-27635127:+ chr1:27561442:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49097498:- chr18:46562757-46987717:- chr18:46623868:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Dyggve-Melchior-Clausen_syndrome_protein(8%) |Dymeclin(13%) 0 1 1 96 169 ENST00000319394.8 ENST00000675505.1 downstream downstream none CCGGGATCCGCGCCCCCCcTCCCGGGAGAGGGGCCGCCCCCCCCGGACGGACATGGGCTCCTGAAGTTGCGCCGCTGCCGGTCGGGGGAAGAGACCTGACAG|CTCAAGGTTGCTGCAAGCTGGAGCTGAGCTGTCAGTGGAACGGGTCCTGGAAATCATTAAGCAAGGCGTCGTTGCGCTGCCCAAAGACAGACTGAAG___AAATTTCCAGAATTGAAATTCAAATATGTGGAAGAGGAGCAGCCCGAGGAGTTTTTTATCCCCTATGTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 75 C2CD5::PARP11-AS1 ENSG00000111731.13::ENSG00000256862.5 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22506711:- chr12:22601517-22697480:- chr12:22659645:- PARP11-AS1 ENSG00000256862.5 lncRNA + - chr12:3871579-3910385:+ chr12:3875131:- chr12:3980745-4019551:+ chr12:3984297:- chr12:22501739,chr12:22501739,chr12:22501739,chr12:22501739 chr12:3892046,chr12:3892076,chr12:3892090,chr12:3892099 NA NA chr12:22654673,chr12:22654673,chr12:22654673,chr12:22654673 chr12:4001212,chr12:4001242,chr12:4001256,chr12:4001265 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none C2_domain(100%)| C2(100%)| 6 34 18 260 90 ENST00000333957.8 unknown upstream downstream duplicates(4),mismatches(2) GGGAAGTGGTAGTGCTGGAAAAGAAGGGGGGCCCTTTAAAGCTCTTTTAAGACAACAGACTCAATCAGCGTTGGAACAGAGG___GAATTTCCATTTTTTACCTTGACGGCATTTCCTCCTGGATTCCTTGTACACGTTGGGGGTGTAGTTAGTGCACGTTCTGTGAAGCTTTTGGATCGTATCCACAATCCTG|ATGCTGATGCAGATCTGAAAAAAAATTGTTAATGCATCTAAAGATACAGAAAACAAGTATTTCTGAATGGAAAGACCCATGATATTGAAAATTTTGAAAAAGAAGAGAATTAGGAGAGGTTCCTTTATGAAAAGGCAAATATATTAAATATGTAATGATTATAACTGTGGCATATTTTAGGAATAAGC GSGSAGKEGGPFKALLRQQTQSALEQREFPFFTLTAFPPGFLVHVGGVVSARSVKLLDRIHNP|dadadlkknc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 76 PPM1D::BCAS3 ENSG00000170836.13::ENSG00000141376.24 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 11 FALSE NA FALSE NA PPM1D ENSG00000170836.13 protein_coding + + chr17:60600193-60666280:+ chr17:60600886:+ chr17:58677554-58743641:+ chr17:58678247:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60709219:+ chr17:58754814-59470199:+ chr17:58786580:+ chr17:60609400,chr17:60609400 chr17:60691991,chr17:60691988 NA NA chr17:58686761,chr17:58686761 chr17:58769352,chr17:58769349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Protein_phosphatase_2C(30%)|Breast_carcinoma_amplified_sequence_3_(100%) PP2C(0%)|BCAS3(100%),WD40(100%) 9 13 6 89 109 ENST00000305921.8 ENST00000407086.8 downstream upstream duplicates(3),mismappers(2),mismatches(1) GCACGGCGGGCGGGAGGCGGCACAGTTTGCCCGGGAGCACTTGTGGGGTTTCATCAAGAAGCAGAAGGGTTTCACCTCGTCCGAGCCGGCTAAGGTTTGCGCTGCCATCCGCAAAGGCTTTCTCGCTTGTCACCTTGCCATGTGGAAGAAACTGG|ATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAgTGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCT___ATCAGTGGcGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAG HGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKL|dTSRNLEFHEIHSTGsEPPLLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase, Mg2+/Mn2+ dependent 1D 1 Yes glioma, ovarian cancer, breast cancer epithelial oncogene amplification, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 77 UBE2D2::CXXC5 ENSG00000131508.17::ENSG00000171604.12 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 17 TRUE 7 UBE2D2 ENSG00000131508.17 protein_coding + + chr5:139526431-139628434:+ chr5:139561815:+ chr5:138906016-139008019:+ chr5:138941400:+ CXXC5 ENSG00000171604.12 protein_coding + + chr5:139647299-139683882:+ chr5:139680364:+ chr5:139026884-139063467:+ chr5:139059949:+ chr5:139596025,chr5:139596024 chr5:139675117,chr5:139675117 NA NA chr5:138975610,chr5:138975609 chr5:139054702,chr5:139054702 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none Ubiquitin-conjugating_enzyme(2%)|CXXC_zinc_finger_domain(100%) UQ_con(0%)|zf-CXXC(100%) 3 13 5 144 182 ENST00000398733.8 ENST00000302517.8 downstream upstream duplicates(1),mismatches(2) CCAGGAGCTGAGTGGGCCCCGGCCCTCAGCCCGTCCCGCCGGACCCGCTTTCCTCAACTCTCCATCTTCTCCTGCCGACCGAGATCGCCGAGGCGGCCTCAGGCTCCCTAGCCCCTTCCCCGTCCCTTCCCCGCCCCCGTCCCCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAG|AGTGAAGACATTTCCACCTGGACACCTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGCTCCCTCTGCAGTGGGGTCTGGGCCTCGGCCCCACCATGTCGAGCCTCGGCGGTGGCTCCCAGGATGCCGGCGGCAGTAGCAGCAGCAGCACCAATGGC MALKRIHK|sedistwtpdhvpalsseahqasllwaagpgpglwtlgswqapsavgsgprphhveprrwlpgcrrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 78 UBE2D2::CXXC5 ENSG00000131508.17::ENSG00000171604.12 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 17 TRUE 7 UBE2D2 ENSG00000131508.17 protein_coding + + chr5:139526431-139628434:+ chr5:139561815:+ chr5:138906016-139008019:+ chr5:138941400:+ CXXC5 ENSG00000171604.12 protein_coding + + chr5:139647299-139683882:+ chr5:139679847:+ chr5:139026884-139063467:+ chr5:139059432:+ chr5:139596025,chr5:139596024 chr5:139675117,chr5:139675117 NA NA chr5:138975610,chr5:138975609 chr5:139054702,chr5:139054702 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none Ubiquitin-conjugating_enzyme(2%)|CXXC_zinc_finger_domain(100%) UQ_con(0%)|zf-CXXC(100%) 0 1 5 144 21 ENST00000398733.8 ENST00000302517.8 downstream upstream mismatches(1) GCTAGGGCGGCGGCGAATAAAGGGGCCGCCGCCGGGTGATGCGGTGACCGCTGCGGCAGGCCCAGGAGCTGAGTGGGCCCCGGCCCTCAGCCCGTCCCGCCGGACCCGCTTTCCTCAACTCTCCATCTTCTCCTGCCGACCGAGATCGCCGAGGCGGCCTCAGGCTCCCTAGCCCCTTCCCCGTCCCTTCCCCGCCCCCGTCCCCGCCCCGGGGGCCGCCGCCACCCGCCTCCCACCATGGCTCTGAAGAGAATCCACAAG|AGATAGAGTTTCACCATGTTGTCCAGGGTGGTCTCAAAA...CTGACCATGTGCCTGCCCTGAGCAGCGAGGCCCACCAGGCATCTCTGTTGTGGGCAGCAGGGCCAGGTCCTGGTCTGTGGACCCTCGGCAGTTGGCAGGC MALKRIHK|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 82 AGPS::ENSG00000225258 ENSG00000018510.18::ENSG00000225258.1 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 18 TRUE 8 AGPS ENSG00000018510.18 protein_coding + + chr2:177392746-177567024:+ chr2:177468524:+ chr2:178257474-178431752:+ chr2:178333252:+ ENSG00000225258 ENSG00000225258.1 lncRNA - - chr2:180571712-180692454:- chr2:180612702:- chr2:181436439-181557181:- chr2:181477429:- chr2:177473359,chr2:177473360 chr2:180619462,chr2:180619461 NA NA chr2:178338087,chr2:178338088 chr2:181484189,chr2:181484188 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none FAD_binding_domain_(100%)| FAD_binding_4(100%),Trypan_glycop_C(100%)| 3 2 4 251 3 ENST00000679459.1 ENST00000429816.1 downstream downstream none GGCATAACAGGACAAGAGTTGGAAAGACAG___CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCAGATTCCCTGGAGTTCAGTACTGTAGGAGGATGGGT...GCATCAGGCATGAAGAAGAATATCTATGGCAATATCGAGGACCTG___GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG|CCTGAGGACTTTAACAGGCAAATAGCACTGAAGCCACTTTACCTGCCTCTGAACCTGGCCAGAAGTGCT...AAAAGCAAGACTTTGTCTTGCTTTCATCAGTGCATGGACATTTGAGCTCTTTCAACTTTTTGGCTATGATGAACATGTTTGGAATGCTATGAACATTTATG ASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDIHHFIMGSE|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 83 AGPS::ENSG00000225258 ENSG00000018510.18::ENSG00000225258.1 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 18 TRUE 8 AGPS ENSG00000018510.18 protein_coding + + chr2:177392746-177567024:+ chr2:177468524:+ chr2:178257474-178431752:+ chr2:178333252:+ ENSG00000225258 ENSG00000225258.1 lncRNA - - chr2:180571712-180692454:- chr2:180600907:- chr2:181436439-181557181:- chr2:181465634:- chr2:177473359,chr2:177473360 chr2:180619462,chr2:180619461 NA NA chr2:178338087,chr2:178338088 chr2:181484189,chr2:181484188 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none FAD_binding_domain_(100%)| FAD_binding_4(100%),Trypan_glycop_C(100%)| 0 3 4 251 4 ENST00000679459.1 ENST00000429816.1 downstream downstream mismatches(1) GCTGGCATAACAGGACAAGAGTTGGAAAGACAG___CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCAGATTCCCTGGAGTTCAGTACTGTAGGAGGATG...GCATCAGGCATGAAGAAGAATATCTATGGCAATATCGAGGACCTG___GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG|ATGAGGAAACTGAGGTACAGAGAGGCCAAGCACATTGTGAAGGTCACACAgCTAGGAGAGGAAGGAGGTGGAATTCTCACTCAGCTGATGTGGCCTCAGCACCTGCACTCTCCTGTTTTCTGCTGAACTGCATTCTGCTCTCCCATTTTATGCCTGTGGAAC...GTCTGAGAAGTGTTTCACCTTAATTGGACTTAAAGCAAGAATAAATTATCCTACATATCATAACACATCAGGCCCAATCAAGCTCAGAAAATGACTGTTTG ASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDIHHFIMGSE|deetevqrgqahceghtarrgrrwnshsadvasapalscfllncillshfmpve NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 84 DOCK7::CACHD1 ENSG00000116641.18::ENSG00000158966.16 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DOCK7 ENSG00000116641.18 protein_coding - - chr1:62454298-62688386:- chr1:62537891:- chr1:62919969-63154057:- chr1:63003562:- CACHD1 ENSG00000158966.16 protein_coding + + chr1:64470129-64693058:+ chr1:64671564:+ chr1:64935812-65158741:+ chr1:65137247:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none C2_domain_in_Dock180_and_Zizimin_proteins(100%),Dedicator_of_cytokinesis_C/D__N_terminal(100%)| DOCK-C2(100%),DUF3398(100%),Fibrinogen_C(100%)| 2 2 4 31 9 ENST00000635253.2 ENST00000651257.2 upstream upstream none AGGgGTCTTCAAAGCTTTACTCATTACCGAATCCCAGTGTTCTGGTGTCCTTGAGGCTGGATTTTCTACGAATCATCTGCAGTCATGAGCACTATGTTACATTAAACTTACCCTGCAGCTTACTTACTCCACCTGCATCTCCATCACCTTCTGTTTCTTCTGCAACATCTCAG|TACACAGCTGTCTTCTGGGCACACTGTGGCTGTGATGGGCATTGACTTCACACTCAGATACTTCTACAAAGTTCTGATGGACCTATTACCTGTCTGTAACCAAGATGGTGGCAACAAAATAAG___GTGCTTCATAATGGAGGACAGGGGTTATCTGGTGGCGCACCC gSSKLYSLPNPSVLVSLRLDFLRIICSHEHYVTLNLPCSLLTPPASPSPSVSSATSQ|ytavfwahcgcdgh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 85 DHDDS::LRGUK ENSG00000117682.18::ENSG00000155530.4 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHDDS ENSG00000117682.18 protein_coding + + chr1:26432282-26471306:+ chr1:26446432:+ chr1:26758773-26797797:+ chr1:26772923:+ LRGUK ENSG00000155530.4 protein_coding + - chr7:134127299-134264595:+ chr7:134180142:- chr7:133812052-133949347:+ chr7:133864894:- chr1:26457408,chr1:26457409 chr7:134187627,chr7:134187626 NA NA chr1:26783899,chr1:26783900 chr7:133872379,chr7:133872378 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Putative_undecaprenyl_diphosphate_synthase(50%)| Prenyltransf(26%)| 2 2 4 415 4 ENST00000236342.12 unknown downstream downstream duplicates(1),mismatches(1) CGGGCTTATGGATCTGGCCCGGCAGAAGTTCAGCCGCTTGATGGAAGAAAA___GGAGAAACTGCAGAAGCATGGGGTGTGTATCCGGGTCCTGGGCGATCTGCACTTGTTGCCCTTGGATCTCCAGGAGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAACAA|AAAAGGCTGATTCCAGATTTGGGACAGGACATGTACCAGATGAGTCTGGAGAACTTTGTCATATCAGAAG___ACATGTTCATCAAGATACAAACAAAAAGAAAGTTACTAAGAGCTACATGCAAAGTCAAGAGCC GLMDLARQKFSRLMEEKEKLQKHGVCIRVLGDLHLLPLDLQELIAQAVQATKNYNk|kg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 89 EEPD1::ELMO1 ENSG00000122547.12::ENSG00000155849.16 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EEPD1 ENSG00000122547.12 protein_coding + + chr7:36153254-36301538:+ chr7:36155202:+ chr7:36192863-36341147:+ chr7:36194811:+ ELMO1 ENSG00000155849.16 protein_coding - + chr7:36852906-37449223:- chr7:36890187:+ chr7:36892511-37488826:- chr7:36929792:+ chr7:36222745,chr7:36222744 chr7:36875780,chr7:36875776 NA NA chr7:36262354,chr7:36262353 chr7:36915385,chr7:36915381 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Helix-hairpin-helix_motif(100%)| HHH(100%),HHH_3(100%)| 1 3 0 70 7 ENST00000242108.9 unknown downstream upstream mismatches(1) GATGGGAGGCCTGTGCTGAGGCTGGCCACCTGGAACTTGCAGGGCTGTTCCGTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTGCATGACACTCCTGGAAAACAG|GTCTTGCCAATAAATAAAAGGAGGAAGATTAAAGGAGAGAAGATTTAAAGAGTGTGTGAAGAGCAATTCAAAGTCTAGCACTGTTTCTGGAAAACAATTTCAAGTTCAAGCCCAGTGAGGCCACTGCCATGCACAGAAGACAGA DGRPVLRLATWNLQGCSVEKANNPGVREVVCMTLLENr|scq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 103 ERBB2::JUP ENSG00000141736.14::ENSG00000173801.17 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 22 FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39710481:+ chr17:37844167-37886679:+ chr17:37866734:+ JUP ENSG00000173801.17 protein_coding - + chr17:41754604-41786931:- chr17:41785591:+ chr17:39910856-39943183:- chr17:39941843:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Furin-like_cysteine_rich_region(72%),Receptor_L_domain(50%)| Furin-like(35%),Recep_L_domain(45%)| 10 0 2 38440 32 ENST00000584601.5 unknown downstream upstream mismatches(1) CCGATGTGTAAGGGCTCCCGCTGCTGGGGAGAGAGTTCTGAGGATTGTCAGAGCC___TGACGCGCACTGTCTGTGCCGGTGGCTGTGCCCGCTGCAAGGGGCCACTGCCCACTGACTGCT...CAGTGTGCTGCCGGCTGCACGGGCCCCAAGCACTCTGACTaaCTG___GCCTGCCTCCACTTCAACCACAGTGGCATCTGTGAGCTGCACTGCCCAGCCCTGGTCACCTACAACACAGACACGTTTGAGTCCATGCCCAATCCCGAGGGCCGGTATACATTCGGCGCCAGCTGTGTGACTGCCTGTCCCT|GAAGGACCCCCTAAGCCTAAAGGAAGTTTTGGGCAAGGAGACGGGAAAACCCCCAGATAAAGCTG QCAAGCTGPKHSD*LACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 106 JUP::ERBB2 ENSG00000173801.17::ENSG00000141736.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 23 FALSE NA JUP ENSG00000173801.17 protein_coding - - chr17:41754604-41786931:- chr17:41771649:- chr17:39910856-39943183:- chr17:39927901:- ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39727688:+ chr17:37844167-37886679:+ chr17:37883941:+ chr17:41767974,chr17:41768333,chr17:41768058 chr17:39704413,chr17:39704492,chr17:39704379 NA NA chr17:39924226,chr17:39924585,chr17:39924310 chr17:37860666,chr17:37860745,chr17:37860632 NA NA sense sense in-frame CDS/splice-site intron inversion low none none |Rdx(100%) 1 0 0 38653 51644 ENST00000393931.8 ENST00000584450.5 upstream upstream none GATGAACCTGATGGAGCAGCCTATCAAGGTGACTGAGTGGCAGCAGACATACACCTACGACTCGGGTATCCACTCGGGCGCCAACACCTGCGTGCCCTCCG...CCAGTACACGCTCAAGAAAACCACCACTTACACCCAGGGGGTGCCCCCCAGCC|t|GAATATGTGAACCAGCCAGATGTTCGGCCCCAGCCCCCTTCGCCCCG QYTLKKTTTYTQGVPPS|l|NM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 112 PGAP3::PIPOX ENSG00000161395.14::ENSG00000179761.12 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 15 FALSE NA FALSE NA PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:29054545:+ chr17:27277531-27384234:+ chr17:27381563:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Per1-like_family(36%)|FAD_dependent_oxidoreductase(40%) Per1(21%)|DAO(12%) 5 5 3 10298 71 ENST00000579146.5 ENST00000323372.9 upstream upstream mismatches(2) TCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAG___TGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTACCACACCTGTGTGGCCTTCGCCTGG|ACCCTGCGGATCAACGTGTGTTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCCCAGGCCTTTCCGTGCTTCCTGTGGCTGGGCTTGTGTCCCCACCACATCTACGGACTGCCCACAGGAGAGTACCCAGGGCTGATGAAG___GTCAGCTATCACCACGGCAACCACGCAGACCCTGAGGAGCGGGACTGCCCCACAGCAC YLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAW|TLRINVCYWREMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 120 DHX58::ENSG00000254237 ENSG00000108771.13::ENSG00000254237.6 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 25 FALSE NA DHX58 ENSG00000108771.13 protein_coding - - chr17:42101404-42112714:- chr17:42107604:- chr17:40253422-40264732:- chr17:40259622:- ENSG00000254237 ENSG00000254237.6 lncRNA - - chr8:9367898-9436205:- chr8:9375139:- chr8:9225408-9293715:- chr8:9232649:- chr17:42105668,chr17:42105671 chr8:9378495,chr8:9378495 NA NA chr17:40257686,chr17:40257689 chr8:9236005,chr8:9236005 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none RIG-I_receptor_C-terminal_domain(92%),Type_III_restriction_enzyme__res_subunit(100%)| DEAD(100%),RIG-I_C(50%),ResIII(100%),SWI2_SNF2(100%)| 0 0 0 14 3 ENST00000251642.8 ENST00000522129.5 upstream downstream mismatches(1) GCGCCGGCTGCTGGCCCTGTTCGATG|GTTCTGTGGATGAGGCATGGTGCTTGGCACAGACTGACACAAGTTTGGGCAAACTTGGCAGAGCAGCCTAACCCAAAGCGAAAAACAGAAATGAAC RRLLALFD|gsvdeawclaqtdtslgklgraa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 147 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 16 TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447378:- chr22:19338891-19435234:- chr22:19434901:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19458139:- chr22:19437434-19466725:- chr22:19445662:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF3128)(68%)|Ubiquitin_fusion_degradation_protein_UFD1(16%) DUF3128(0%)|UFD1(5%) 111 114 162 391 1522 ENST00000399562.9 ENST00000263202.15 upstream downstream duplicates(34),mismatches(21),multimappers(3) CAGACATGGCGGACGGCAGCGGCTGGCAG___CCGCCGCGCCCCTGCGAGGCCTACCGCGCCGAGTGGAAGCTCTGCCGCAGCGCCAGGCACTTCCTACACCACTACTACGTCCACGGCGAGCGGCCGGCCTGCGAACAGTGGCAGCGCGACCTGGCCAGCTGCCGCGACTGGGAGGAGCGCCGGAACGCCGAGGCCCAG|ATCTACGAACTGCGTGTGATGGAGACCAAACCCGACAAGGCAGTGTCCATCATTGAGTGTGACATGAAC___GTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACA___GAAGGTGAAGCCGACCACAGT MADGSGWQPPRPCEAYRAEWKLCRSARHFLHHYYVHGERPACEQWQRDLASCRDWEERRNAEAQ|IYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 148 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447378:- chr22:19338891-19435234:- chr22:19434901:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19456918:- chr22:19437434-19466725:- chr22:19444441:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF3128)(68%)|Ubiquitin_fusion_degradation_protein_UFD1(3%) DUF3128(0%)|UFD1(0%) 1 1 39 391 1735 ENST00000399562.9 ENST00000263202.15 upstream downstream duplicates(3),mismatches(4) GTCGCCCAGACATGGCGGACGGCAGCGGCTGGCAG___CCGCCGCGCCCCTGCGAGGCCTACCGCGCCGAGTGGAAGCTCTGCCGCAGCGCCAGGCACTTCCTACACCACTACTACGTCCACGGCGAGCGGCCGGCCTGCGAACAGTGGCAGCGCGACCTGGCCAGCTGCCGCGACTGGGAGGAGCGCCGGAACGCCGAGGCCCAG|GTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACA___GAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGC___GCTTTCTCTGGATCTGGCAATAGACTGGATGGAAAGA MADGSGWQPPRPCEAYRAEWKLCRSARHFLHHYYVHGERPACEQWQRDLASCRDWEERRNAEAQ|VDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 149 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 17 TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447665:- chr22:19338891-19435234:- chr22:19435188:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19458139:- chr22:19437434-19466725:- chr22:19445662:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Ubiquitin_fusion_degradation_protein_UFD1(16%) |UFD1(5%) 0 21 0 157 1522 ENST00000399562.9 ENST00000263202.15 upstream downstream mismatches(2) CGGGCTTGGCGCGCCGGTCGCCCAGACATGGCGGACGGCAGCGGCTGGCAG|ATCTACGAACTGCGTGTGATGGAGACCAAACCCGACAAGGCAGTGTCCATCATTGAGTGTGACATGAAC___GTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACA___GAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGC___GCTTTCTCTGGATCTGGCAATAGACTGGATGGAAAGAAGAAAGGGGTAGAGCCCAGCCCCTCCCCAATCAAGCCTGGAGATATTAAAAG___AGGAATTCCCAATTATGAATTTAAACTTGGTAAGATAACTTTCATCAGAAATTCACGTCCC MADGSGWQ|IYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 150 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447665:- chr22:19338891-19435234:- chr22:19435188:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19450744:- chr22:19437434-19466725:- chr22:19438267:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 0 1 0 157 736 ENST00000399562.9 ENST00000263202.15 upstream downstream none CCCAGACATGGCGGACGGCAGCGGCTGGCA|t|GATGAAGCTGGAGGCAGATTCGTCGCTTTCTCTGGAGAAGGACAGTCATTGCGTAAAAAGGGAAGAAAGCCCTAAGTGAGGACTGTTG MADGSGWh|DEAGGRFVAFSGEGQSLRKKGRKP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 151 MROH1::EXOSC4 ENSG00000179832.18::ENSG00000178896.9 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MROH1 ENSG00000179832.18 protein_coding + + chr8:144148016-144261927:+ chr8:144163848:+ chr8:145202919-145316830:+ chr8:145218751:+ EXOSC4 ENSG00000178896.9 protein_coding + + chr8:144078648-144080648:+ chr8:144080242:+ chr8:145133551-145135551:+ chr8:145135145:+ chr8:144167572,chr8:144167593,chr8:144167567 chr8:144080209,chr8:144080209,chr8:144080195 NA NA chr8:145222475,chr8:145222496,chr8:145222470 chr8:145135112,chr8:145135112,chr8:145135098 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |3'_exoribonuclease_family__domain_1(19%),3'_exoribonuclease_family__domain_2(100%) |RNase_PH(5%),RNase_PH_C(100%) 52 85 48 267 622 ENST00000423230.6 ENST00000316052.6 downstream upstream duplicates(15),mismatches(7) CGGCCGAGGTGGCGGCGGCTCCTCAG___ATGGGAGAAGAAGTTGTCCATGTTCACACTGGGTGAAGGAAGCTGAAACCACAGACATGACTGAGTCCTCCATGAAGA|GTGCTACAGGCAGATGGTGGGACCTATGCAGCTTGTGTGAATGCAGCCACGCTGGCAGTGCTGGATGCCGGGATACCCATGAGAGACTTTGTGTGTGCGTGCTCAGCTGGCTTCGTGGACGGCACAGCCCTGGCGGACCTCAGCCATGTGGAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCTGGCCCTGCTGCCAGCCTCAGGACAGATTGCGCTGCTTGAGATGGATGCCCGGCTGCACGAGGACCACCTGGAGCGGGTGTTGGAGGCTGCTGCCCAGGCTGCC MTESSMK|satgrwwdlcslcecshagsagcrdtherlcvcvlswlrgrhspggpqpcggsswwppagpgpaaslrtdcaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 152 MROH1::ENSG00000290230 ENSG00000179832.18::ENSG00000290230.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 30 TRUE 10 MROH1 ENSG00000179832.18 protein_coding + + chr8:144148016-144261927:+ chr8:144163848:+ chr8:145202919-145316830:+ chr8:145218751:+ ENSG00000290230 ENSG00000290230.1 protein_coding + + chr8:144078642-144084330:+ chr8:144080242:+ chr8:145133545-145139233:+ chr8:145135145:+ chr8:144167572,chr8:144167593,chr8:144167567 chr8:144080209,chr8:144080209,chr8:144080195 NA NA chr8:145222475,chr8:145222496,chr8:145222470 chr8:145135112,chr8:145135112,chr8:145135098 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |RNase_PH(5%),RNase_PH_C(100%) 52 79 46 267 622 ENST00000423230.6 ENST00000703646.1 downstream upstream duplicates(15),mismatches(6) CGGCCGAGGTGGCGGCGGCTCCTCAG___ATGGGAGAAGAAGTTGTCCATGTTCACACTGGGTGAAGGAAGCTGAAACCACAGACATGACTGAGTCCTCCATGAAGA|GTGCTACAGGCAGATGGTGGGACCTATGCAGCTTGTGTGAATGCAGCCACGCTGGCAGTGCTGGATGCCGGGATACCCATGAGAGACTTTGTGTGTGCGTGCTCAGCTGGCTTCGTGGACGGCACAGCCCTGGCGGACCTCAGCCATGTGGAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCTGGCCCTGCTGCCAGCCTCAGGACAGATTGCGCTGCTTGAGATGGATGCCCGGCTGCACGAGGACCACCTGGAGCGGGTGTTG MTESSMK|satgrwwdlcslcecshagsagcrdtherlcvcvlswlrgrhspggpqpcggsswwppagpgpaaslrtdcaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 153 MROH1::ENSG00000290230 ENSG00000179832.18::ENSG00000290230.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 30 TRUE 10 MROH1 ENSG00000179832.18 protein_coding + + chr8:144148016-144261927:+ chr8:144163848:+ chr8:145202919-145316830:+ chr8:145218751:+ ENSG00000290230 ENSG00000290230.1 protein_coding + + chr8:144078642-144084330:+ chr8:144083389:+ chr8:145133545-145139233:+ chr8:145138292:+ chr8:144167572,chr8:144167593,chr8:144167567 chr8:144080209,chr8:144080209,chr8:144080195 NA NA chr8:145222475,chr8:145222496,chr8:145222470 chr8:145135112,chr8:145135112,chr8:145135098 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 1 0 267 1212 ENST00000423230.6 ENST00000703646.1 downstream upstream none GGCGGCTCCTCAG___ATGGGAGAAGAAGTTGTCCATGTTCACACTGGGTGAAGGAAGCTGAAACCACAGACATGACTGAGTCCTCCATGAAGA|GGCTCTGCCAGTGGCCTGGCTTGAACGGACGATGCGGTCAGTAGGGCTGGAGGTCTACA MTESSMK|rlcqwpglngrcgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 154 HIRA::UFD1 ENSG00000100084.14::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19447378:- chr22:19318221-19434973:- chr22:19434901:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19458139:- chr22:19437434-19466725:- chr22:19445662:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |Ubiquitin_fusion_degradation_protein_UFD1(16%) DUF3128(0%)|UFD1(5%) 4 85 0 391 1522 ENST00000452818.1 ENST00000263202.15 upstream downstream duplicates(4),mismatches(1) GGCCTGCGAACAGTGGCAGCGCGACCTGGCCAGCTGCCGCGACTGGGAGGAGCGCCGGAACGCCGAGGCCCAG|ATCTACGAACTGCGTGTGATGGAGACCAAACCCGACAAGGCAGTGTCCATCATTGAGTGTGACATGAAC___GTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACA___GAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGC___GCTTTCTCTGGATCTGGCAATAGACTGGATGGAAAGAAGAAAGGGGTAGAGCCCAGCCCCTCCCCAATCAAGCCTGGAGATATTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 155 ZNF8::ZNF544 ENSG00000278129.2::ENSG00000198131.15 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF8 ENSG00000278129.2 protein_coding + + chr19:58278955-58302791:+ chr19:58279147:+ chr19:58790321-58814157:+ chr19:58790513:+ ZNF544 ENSG00000198131.15 protein_coding + + chr19:58228594-58277495:+ chr19:58243965:+ chr19:58739960-58788861:+ chr19:58755331:+ chr19:58280514,chr19:58280505 chr19:58241524,chr19:58241511 NA NA chr19:58791880,chr19:58791871 chr19:58752890,chr19:58752877 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 4 7 22 54 121 ENST00000621650.2 ENST00000595981.5 downstream upstream duplicates(1),mismatches(2) CCGGCGTTCGGCGAGTCGGGTGGTCCCTTTGGCTGGAGTGCCTCTCTGGTCTGGGGATCACCTCAGGCGCTGTCCTTCACTGGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCGGGAGTGATGTCTGTGGGGCCGCCGGCGGCCCGGCTTCAG|ACTGGTCTTCTGAGGACCTCTGCCCTCTACACAGCGGCCTCTTCAGGTGCAGGGAGGAAATGGAAGCACGTTCTATGCTGGTTCCACCCCAG___GCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAG MDPEDEGVAGVMSVGPPAARLQ|tgllrtsalytaassgagrkwkhvlcwfhprhlcasrmwlwhshrrsgnswtwprghcte NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 158 UTRN::STX11 ENSG00000152818.20::ENSG00000135604.11 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 31 TRUE 11 UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144291907:+ chr6:144606471-145174170:+ chr6:144613043:+ STX11 ENSG00000135604.11 protein_coding + + chr6:144150487-144191939:+ chr6:144186623:+ chr6:144471624-144513076:+ chr6:144507760:+ chr6:144310853,chr6:144310850 chr6:144169560,chr6:144169554 NA NA chr6:144631989,chr6:144631986 chr6:144490697,chr6:144490691 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none |Syntaxin(100%) |Syntaxin(100%) 7 9 10 89 33 ENST00000367545.8 ENST00000367568.5 downstream upstream mismappers(1),mismatches(2) CCGCGGTTACTCCGTGTCAAACTCCTAGAGGAGCCCTTGGCCAGCTCGGGGTGCGGCGGTGGCGACCGGCAGGCGAGGAGGCCCGCGGGCAGCAG___GTATTGATGTCAAGCTGAACCATCGTAGGAAGTTGAAAGCCTTAGAAAGAGGACTTGGTAAAGTTTTTGGATTATCTTGAAACTCTGGCAAGATGGCCAAGTATGGAGAACATGAAGCCAGTCCTGACAATGGGCAGAACGAATTCAGTGATATCATTAAGTCCAGATCTG|GCAAAATGAAAGACCGGCTAGCAGAACTTCTGGACTTGTCCAAGCAATATGACCAGCAGTTCCCAGACGGGGACGATGAGTTTGACTCGCCCCACGAGGACATCGTGTTCGAGACGGACCACATCCTGGAGTCCCTGTACCGAGACATCCGGGACATTCAGGATGAAAACCAGCTGCTGGTGGCCGACGTGAAGCGGCTGGGAAAGCAGAACGCCCGCTTCCTCACGTCCATGCGGCGCCTCAGCAGCATCAAGCGCGACACCAAC MAKYGEHEASPDNGQNEFSDIIKSRS|gkMKDRLAELLDLSKQYDQQFPDGDDEFDSPHEDIVFETDHILESLYRDIRDIQDENQLLVADVKRLGKQNARFLTSMRRLSSIKRDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 159 UTRN::STX11 ENSG00000152818.20::ENSG00000135604.11 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 31 TRUE 11 UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144285821:+ chr6:144606471-145174170:+ chr6:144606957:+ STX11 ENSG00000135604.11 protein_coding + + chr6:144150487-144191939:+ chr6:144186623:+ chr6:144471624-144513076:+ chr6:144507760:+ chr6:144310853,chr6:144310850 chr6:144169560,chr6:144169554 NA NA chr6:144631989,chr6:144631986 chr6:144490697,chr6:144490691 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Syntaxin(100%) |Syntaxin(100%) 1 1 3 72 33 ENST00000367545.8 ENST00000367568.5 downstream upstream mismatches(1) GTCGTTTTTCCTCGGAGCAGGGAAGCGGGCAGCAGCAGCCGGCCGCGGGCTTTCTCCCGCCGAGGGGCGAGGAGGAGCCTCTGGCTCCAGAAGCCGATTGG...CTTTCTTTCTTTTTTTAAAATTTCGGTTCGTGTCTGCTTCTCCAAGCTTTA-TTTTTTTTTTAAATACATCGCACCACCAAACTAACACTCGCACACACCCCCGCGGTTACTCCGTGTCAAACTCCTAGAGGAGCCCTTGGCCAGCTCGGGGTGCGGCGGTGGCGACCGGCAGGCGAGGAGGCCCGCGGGCAGCAG|GCAAAATGAAAGACCGGCTAGCAGAACTTCTGGACTTGTCCAAGCAATATGACCAGCAGTTCCCAGACGGGGACGATGAGTTTGACTCGCCCCACGAGGACATCGTGTTCGAGACGGACCACATCCTGGAGTCCCTGTACCGAGACATCCGGGACATTCAGGATGAAAACCAGCTGCTGGTGGCCGACGTGAAGCGGCTGGGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 160 NSMF::EXD3 ENSG00000165802.23::ENSG00000187609.16 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NSMF ENSG00000165802.23 protein_coding - - chr9:137447570-137459334:- chr9:137449923:- chr9:140342022-140353786:- chr9:140344375:- EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137324143:- chr9:140201348-140317663:- chr9:140218595:- chr9:137449794 chr9:137328479 NA NA chr9:140344246 chr9:140222931 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Mut7-C_RNAse_domain(65%) IQ(100%)|Mut7-C(37%) 8 4 11 228 23 ENST00000371475.9 ENST00000491734.6 upstream downstream low_entropy(1),mismatches(1) CCAAGATCTGGAAAATGCTGATTTTCTGCCAG___GGAGGTCCTGGACACCTCTATCTCCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTGGAGAAGGAAGAGGACATGATTCA___CTTCTGGAAGCGGCTGAGCCGCCTGATGAGCAAAGTGAACCCAGAGCCGAACGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCCAATGGAGAGAAG|GTTGCCAGGCAGGAGGGGAGGATCATTCTGACGTCGGGGCAGCCATTCCACAAG___CTCCGGGCCCAGGTCGGGGCTGGGCGCTGCCTCTCGGTCGACTGCTCCCTGAAGGCCCAGCAGCAGGCCAAGGCTGTGCTCAAGCATTTCAACGTGCGTGTCACCCACGCAGACATCTTCAGCCGCTGCCAG___ACCCAGAGCTTCGAG...GGCCTGTAACTGTGACCAGTACCTAAAGGTCTCCAGGGACATGATGAAGCAGCTCATGTGGCTCAGCAGTCACCAGGAGGGGCCCAGGAGCTCAG___GCCCAGC KIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEK|varqegriiltsgqpfhklraqvgagrclsvdcslkaqqqakavlkhfnvrvthadifsrcqtqsf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-7114 chr9:137450026-137450086:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 162 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 19 TRUE 32 TRUE 12 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245059386:+ chr1:245132984-245290466:+ chr1:245222688:+ chr1:245337092,chr1:245337093 chr1:245047333,chr1:245047331 NA NA chr1:245500394,chr1:245500395 chr1:245210635,chr1:245210633 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |EF-hand_domain_pair(100%) |EF-hand_7(100%) 1 3 4 39 46 ENST00000407071.7 ENST00000447569.6 downstream upstream duplicates(1) CCTCCCCCGGCATCGGCACTAGTTCGCCGGGCTCCTTGGGCGGCTCTCCGGGCTTCGGCACAGGCTCCCCGGGCTCCGGCAGCGGCGGCGGCTCCTCCCCCGGCTCGGACCGCGGCGTCTGGTGCGAGAACTGCAACGCCCGCCTGGTGGAGCTCAAGAGGCAGGCCCTGAGGTTGCTCCTCCCGGGGCCCTTCCCGGGCAAG|AGAGATTGGAACAATTATCAGGTCATTAGGATGCTGTCCTACGGAAGGAGAGCTGCATGATCTGATTGCAGAG___GTAGAGGAAGAAGAACCCACTGGATACATTCGATTCGAAAAATTTCTTCCGGTGATGACAGAAATACTACTAGAAAGAAA___ATACAGACCAATTCCAG...CTTACTAAGGACGAGCTGATCAAGTATATGACTGAAGAAG___ATGGAGTTTCGCTCCGTCGCCCAGGCTGAAGTGCAGTGGCGTGATCTTGGCTCGTTGCAAC SPGIGTSSPGSLGGSPGFGTGSPGSGSGGGSSPGSDRGVWCENCNARLVELKRQALRLLLPGPFPGK|rdwnnyqvirmlsygrraa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 163 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 32 TRUE 12 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245082083:+ chr1:245132984-245290466:+ chr1:245245385:+ chr1:245337092,chr1:245337093 chr1:245047333,chr1:245047331 NA NA chr1:245500394,chr1:245500395 chr1:245210635,chr1:245210633 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |EF-hand_domain_pair(100%) |EF-hand_7(100%) 0 1 2 39 52 ENST00000407071.7 ENST00000366522.6 downstream upstream duplicates(1),mismappers(1) CCGGCAGCGGCGGCGGCTCCTCCCCCGGCTCGGACCGCGGCGTCTGGTGCGAGAACTGCAACGCCCGCCTGGTGGAGCTCAAGAGGCAGGCCCTGAGGTTGCTCCTCCCGGGGCCCTTCCCGGGCAAG|GTAGAGGAAGAAGAACCCACTGGATACATTCGATTCGAAAAATTTCTTCCGGTGATGACAGAAATACTACTAGAAAGAAA___ATACAGACCAATTCCAGAAGATGTCCTTCTTCGAGCTTTTGAG___GTTTTAGATTCAGCTAAACGTGGGTTTCTTACTAAGGACGAG...GACTGAAGAAG___ATGGAGTTTCGCTCCGTCGCCCAGGCTGAAGTGCAGTGGCGTGATCTTGGCTCGTTGCAACCTCCACCTCCCGGGTTCAAGAGATTCTCC GSGGGSSPGSDRGVWCENCNARLVELKRQALRLLLPGPFPGK|veeeeptgyirfekflpvmteillerkyrpipedvllrafevldsakrgfltkd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 164 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 32 TRUE 12 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245155487:+ chr1:245318287-245872734:+ chr1:245318789:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245059386:+ chr1:245132984-245290466:+ chr1:245222688:+ chr1:245337092,chr1:245337093 chr1:245047333,chr1:245047331 NA NA chr1:245500394,chr1:245500395 chr1:245210635,chr1:245210633 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |EF-hand_domain_pair(100%) |EF-hand_7(100%) 1 1 1 91 46 ENST00000407071.7 ENST00000447569.6 downstream upstream none CTGGAAGAGGCAGAAGGGGACGAGGAAAAGCATGCTTTGAAGAGAAGAATAAACCAGCGACCCCAACCCTTTCTGCAAATTGGTGCTATTACTTGTGGGAT...CTGAAGAAACCTTGCCCTGAGGGCTGAGAGCCAGCCCCCTGCAGCCGGGGGACGCTTCTGGGTTGGAGGACCTTCTGGATGTAGCGTCGGTGGAACCTTTA...TAAAGAGAGGCTTGCGGTCTCCACCAGGGGCAAGAAATACGGG|AGAGATTGGAACAATTATCAGGTCATTAGGATGCTGTCCTACGGAAGGAGAGCTGCATGATCTGATTGCAGAG___GTAGAGGAAGAAGAACCCACTGGATACATTCGATTCGAAAAATTTCTTCCGGTGATGACAGAAATACTACTAG KERLAVSTRGKKYG|rdwnnyqvirmlsygrraa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 167 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 33 TRUE 13 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193236356:+ chr1:193091113-193223945:+ chr1:193205486:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193673210:+ chr1:193442354-194167838:+ chr1:193642340:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(70%)| B3GALT2_N(100%),CDC73_C(62%),CDC73_N(100%),Galactosyl_T(100%)| 0 2 3 106 7 ENST00000367435.5 ENST00000656143.1 downstream upstream mismatches(1) CAGTACCTTATAGAGTAGTAGACCAGCCCCTTAAACTTATGCCTCAAGACTG___GGACCGCGTTGTAGCCGTTTTTGTGCAGGGTCCTGCATGGCAGTTCAAAGGTTGGCCATGGCTTTTGCCTGATGGATCACCAGTTGATATATTTGCTAAAA|CATTCTCTCTCTTGCTGCCCTGTGAAGAGGTGCCTTCTGCCATAA...CTTCCCCAGCCGTGCAGAACT___AAAAAACACTCAGACTGCATCCTCCCAGAGGAAGGGAAGAGCGATCATCAATGGCAAATGGCATTTTCAGTGAAGGAGC...GGGACCAGTTTTGTGGAAGACAACTTTTCCAAGGACCAGGGTGGaGGTATGGTTTTGAGAAGAAACTGTTTCACCTCAGATCATCAGGCATTAGATTCTCA VPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAK|tfslllpceevpsai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 168 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 33 TRUE 13 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193233154:+ chr1:193091113-193223945:+ chr1:193202284:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193673210:+ chr1:193442354-194167838:+ chr1:193642340:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(50%)| B3GALT2_N(100%),CDC73_C(54%),CDC73_N(100%),Galactosyl_T(100%)| 1 0 2 164 7 ENST00000367435.5 ENST00000656143.1 downstream upstream none CCCAGCCAGTACCAAGACCAG___TTTCTCAAGCAAGACCTCCCCCAAATCAGAAGAAAG___GAaCTCGAACACCCATTATCATAATTCCTGCAGCTACCACCTCT...AAAAGACCTTCTACAGGACCTGAA___ATTTGTCCCATCAGATGAAAAGAAGAAACAAGGTTGTCAACGAGAAAATGAAACTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGTAGTAGACCAGCCCCTTAAACTTATGCCTCAAGACTG|CATTCTCTCTCTTGCTGCCCTGTGAAGAGGTGCCTTCTGCCATAATT___GCTGGAAGCTTA KDLLQDLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDc|ilslaal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 169 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 33 TRUE 13 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193237854:+ chr1:193091113-193223945:+ chr1:193206984:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193513181:+ chr1:193442354-194167838:+ chr1:193482311:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense stop-codon 3'UTR/splice-site intron deletion/read-through medium none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(70%)| B3GALT2_N(100%),CDC73_C(66%),CDC73_N(100%),Galactosyl_T(100%)| 0 1 5 23 3 ENST00000650197.1 unknown downstream upstream inconsistently_clipped(1),mismatches(1) ATCACCAGTTGATATATTTGCTAAAA___ATGCTGGCATGTCAGGGCTGCGGCTGCTGTGACTCTTTACGGCATCCTCCTCGACGTCTGTGAGTGGCCCAGTCCCCTAGCTGCACGTCCAGGAAAAAACCTGTGTCTGCGTACATTTTCCTTCTGTCGTTCGGCCAGGATCTGCAG|GTTGGTCTTGATGACTTGCTTGACTAGAATGTGACAGATGTGATGGACTGGGACTGCCAATGCTAGGTCATGAGAAATTCTAAGAATTCTGCCTGGTCTCTTGGAACACTGATTCAGGGACCCCTGAACCACAGTAAAGAAGTTCAATACTGGAGAAGACACATGTAGATCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 170 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 33 TRUE 13 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193233154:+ chr1:193091113-193223945:+ chr1:193202284:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193899287:+ chr1:193442354-194167838:+ chr1:193868417:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(50%)| B3GALT2_N(100%),CDC73_C(54%),CDC73_N(100%),Galactosyl_T(100%)| 1 0 1 164 5 ENST00000367435.5 ENST00000656143.1 downstream upstream none AGGACCTGAA___ATTTGTCCCATCAGATGAAAAGAAGAAACAAGGTTGTCAACGAGAAAATGAAACTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGTAGTAGACCAGCCCCTTAAACTTATGCCTCAAGACTG|GCTGGAAGCTTATCATGGGCCTGGATCTTGTGCTATTCAAATGTTTcCACCG DLKFVPSDEKKKQGCQRENETLIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDw|leayhgpgscaiqmfp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 172 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:212528090,chr2:212528095,chr2:212480452 chr2:212583054,chr2:212583056,chr2:212716407 NA NA chr2:213392814,chr2:213392819,chr2:213345176 chr2:213447778,chr2:213447780,chr2:213581131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 3 1 127 4 ENST00000436443.5 ENST00000415387.1 upstream downstream none CGCGTGCCCGAAAGGGGGATATGCCATTTGGACATGTAATTGTCAGCACGGGATCTGAGACTTCCAAAAAATGAAGCCGGCGACAGGACTTTGGGTCTGGGTGAGCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACCTCTCCCTCCCAGGCTCAAGTGATC...___ATATAGCAAGAAGGAGCCCATCTGCA MKPATGLWVWVSLLVAAGTVQPSDSQS|alfkrakiwkqlkcsstgfhsvtqagvqwhrlsslqplpprlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 180 KIAA1671::SGSM1 ENSG00000197077.14::ENSG00000167037.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 20 TRUE 35 TRUE 14 KIAA1671 ENSG00000197077.14 protein_coding + + chr22:24952716-25197448:+ chr22:24952772:+ chr22:25348683-25593415:+ chr22:25348739:+ SGSM1 ENSG00000167037.19 protein_coding + + chr22:24806169-24927578:+ chr22:24905105:+ chr22:25202136-25323545:+ chr22:25301072:+ chr22:24970011,chr22:24970009 chr22:24903418,chr22:24903413 NA NA chr22:25365978,chr22:25365976 chr22:25299385,chr22:25299380 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Rab-GTPase-TBC_domain(80%) |RabGAP-TBC(82%) 0 57 0 33 132 ENST00000358431.8 ENST00000400358.9 downstream upstream duplicates(5) AGGGCAGGTGCCGCGGGCTGCGGGCAGGTGGCGGCGCGGCGCGGGCTGGCGGTGGCTCCACG|CTACATCTGGCAGCACATTGAGATCGGCTATGTCCAGGGCATGTGTGATCTTCTGGCTCCACTGCTGGTCATTCTGGATGATG___AGGCCCTTGCCTTCAGCTGCTTCACGGAGCTCATGAAGAGGATGAACCAGAACTTCCCCCACGGAGGCGCCATGGACACGCACTTTGCAAACATGAGATCGTTGATCCAG___ATCCTGGACTCAGAGCTGTTTGAGCTGATGCATCAGAACGGGGACTATACTCACTTCTACTTCTGCTACCGCTGGTTCCTGCTGGATTTCAAGCGAG___AACTCGTCTATGATGACGTCTTCTTGGTCTGGGAGACCATCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 181 KIAA1671::SGSM1 ENSG00000197077.14::ENSG00000167037.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 35 TRUE 14 KIAA1671 ENSG00000197077.14 protein_coding + + chr22:24952716-25197448:+ chr22:24952772:+ chr22:25348683-25593415:+ chr22:25348739:+ SGSM1 ENSG00000167037.19 protein_coding + + chr22:24806169-24927578:+ chr22:24912643:+ chr22:25202136-25323545:+ chr22:25308610:+ chr22:24970011,chr22:24970009 chr22:24903418,chr22:24903413 NA NA chr22:25365978,chr22:25365976 chr22:25299385,chr22:25299380 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Rab-GTPase-TBC_domain(64%) |RabGAP-TBC(40%) 0 1 0 33 130 ENST00000358431.8 ENST00000400358.9 downstream upstream none GCGGCGCGGGCTGGCGGTGGCTCCACG|AGGCCCTTGCCTTCAGCTGCTTCACGGAGCTCATGAAGAGGATGAACCAGAACTTCCCCCACGGAGGCGCCATGGACACGCACTTTGCAAACATGAGATCGTTGATCCAG___ATCCTGGACTCAGAGCTGTTTGAGCTGATGCATCAGAACGGGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 182 KIAA1671::SGSM1 ENSG00000197077.14::ENSG00000167037.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 35 TRUE 14 KIAA1671 ENSG00000197077.14 protein_coding + + chr22:24952716-25197448:+ chr22:24952772:+ chr22:25348683-25593415:+ chr22:25348739:+ SGSM1 ENSG00000167037.19 protein_coding + + chr22:24806169-24927578:+ chr22:24917658:+ chr22:25202136-25323545:+ chr22:25313625:+ chr22:24970011,chr22:24970009 chr22:24903418,chr22:24903413 NA NA chr22:25365978,chr22:25365976 chr22:25299385,chr22:25299380 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Rab-GTPase-TBC_domain(42%) |RabGAP-TBC(12%) 0 1 0 33 129 ENST00000358431.8 ENST00000400358.9 downstream upstream none CGGCGCGGCGCGGGCTGGCGGTGGCTCCACG|ATCCTGGACTCAGAGCTGTTTGgGCTGATGCATCAGAACGGGGACTATACTCACTTCTACTTCTGCTACC...TCCTGCTGGATTTCAAGCGAG___AACTCGTCTATGATGACGTCTTCTTGGTCTGGGAGACCATCTGGGCAGCCAAACACGTCTCCTCTGCGCACTACGTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 184 RAB27A::PIGB ENSG00000069974.17::ENSG00000069943.10 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55230372:- chr15:55495164-55611311:- chr15:55522570:- PIGB ENSG00000069943.10 protein_coding + - chr15:55318960-55355648:+ chr15:55334007:- chr15:55611158-55647846:+ chr15:55626205:- chr15:55229564,chr15:55229566 chr15:55336504,chr15:55336503 NA NA chr15:55521762,chr15:55521764 chr15:55628702,chr15:55628701 NA NA sense antisense stop-codon intron CDS duplication/5'-5' medium none Ras_family(40%)| Arf(15%),Ras(15%),Roc(41%)| 2 0 5 6 103 ENST00000563262.5 unknown upstream downstream duplicates(2),mismappers(1) GTACTTTACCAATATACAGATGGTAAATTTAACTCCAAATTTATCACAACAGTGGGCATTGATTTCAGGGAAAAAAGAGTG___...GTACTGAACAAAAAG...CTTTCACTTTGCTGTTTTAGGTGTACAGAGCCAGTGGGCCGGATGGAGCCACTGGCAGAGGCCAGAGAATCCACCTGCAGTTATGGGACACAGCAGGGCAGGAGAGGTATGAGATCTTCAGTTATGTGCTCCTTA|CCTACAGGTAAAAAATGATGTAGAATAAGATCAAGCTTTCTTGGTTCTTGACAGAAATGTCTGAAGAGCAAAGGTGTCCACAGAATGACAGCTGTGGGACGAATTATGAAGGCAAGTGCCACCAGGGATGAGTATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 187 CDC73::ENSG00000288950 ENSG00000134371.14::ENSG00000288950.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 36 TRUE 15 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193236356:+ chr1:193091113-193223945:+ chr1:193205486:+ ENSG00000288950 ENSG00000288950.1 lncRNA + + chr1:193482540-193546198:+ chr1:193546048:+ chr1:193451670-193515328:+ chr1:193515178:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(70%)| B3GALT2_N(100%),CDC73_C(62%),CDC73_N(100%),Galactosyl_T(100%)| 3 0 1 106 5 ENST00000367435.5 ENST00000691564.1 downstream upstream duplicates(1),mismatches(1) CTCGAACACCCATTATCATAATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAA___ATTTGTCCCATCAGAT...CTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGTAGTAGACCAGCCCCTTAAACTTATGCCTCAAGACTG___GGACCGCGTTGTAGCCGTTTTTGTGCAGGGTCCTGCATGGCAGTTCAAAGGTTGGCCATGGCTTTTGCCTGATGGATCACCAGTTGATATATTTGCTAAAA|GAAGAATATGAAGTCAAGGAAGACCATCCACAGAAAAGATGCTTGCCAAACTCCCAGGTTCCTGGCAGAATGAATAATGTGAATAAAATGCATGTTTAGTCCAACAGTCCTTCTTAAG LIQRRKDQMQPGGTAISVTVPYRVVDQPLKLMPQDWDRVVAVFVQGPAWQFKGWPWLLPDGSPVDIFAK|rri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 188 CDC73::ENSG00000288950 ENSG00000134371.14::ENSG00000288950.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 36 TRUE 15 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193237854:+ chr1:193091113-193223945:+ chr1:193206984:+ ENSG00000288950 ENSG00000288950.1 lncRNA + + chr1:193482540-193546198:+ chr1:193546048:+ chr1:193451670-193515328:+ chr1:193515178:+ chr1:193246598,chr1:193246599 chr1:193492874,chr1:193492872 NA NA chr1:193215728,chr1:193215729 chr1:193462004,chr1:193462002 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site deletion/read-through low none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(70%)| B3GALT2_N(100%),CDC73_C(66%),CDC73_N(100%),Galactosyl_T(100%)| 0 1 1 23 5 ENST00000650197.1 ENST00000691564.1 downstream upstream none CCTGTGTCTGCGTACATTTTCCTTCTGTCGTTCGGCCAGGATCTGCAG|GAAGAATATGAAGTCAAGGAAGACCATCCACAGAAAAGATGCTTGCCAAACTCCCAGGTTCCTGGCAGAATGAATAATGTGAATAAAATGCATGTTTAGTCCAACAGTCCTTCTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 192 PCDH9::CDH2 ENSG00000184226.15::ENSG00000170558.10 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCDH9 ENSG00000184226.15 protein_coding - - chr13:66302834-67230445:- chr13:66631210:- chr13:66876966-67804577:- chr13:67205342:- CDH2 ENSG00000170558.10 protein_coding - - chr18:27932879-28177946:- chr18:27933124:- chr18:25512843-25757910:- chr18:25513088:- chr13:66522102,chr13:66522104 chr18:27940570,chr18:27940569 NA NA chr13:67096234,chr13:67096236 chr18:25520534,chr18:25520533 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Cadherin-like(100%),Cadherin_domain(100%),Protocadherin(100%)| Cadherin(100%),Cadherin_2(100%),Protocadherin(100%)| 0 2 0 0 2 ENST00000544246.5 ENST00000675173.1 upstream downstream none ACCAGGCCTCTCCGGACAAGAGGACTGAAGCAGATGGCAACTCTGATCCCAACTCTG|AAAACCTGGCCCATAcAGAGCTTACACCTATGACCTTGGCTTCGTGGGCACCATGATCTCAGCAATGCATCTATCATGCCTGCCTTTGGACCTAATGAGTATGAACCACATTACATCAGAGAAGAGTGCCAGGGTCAACAATTAATATTTTAGAGTTACAACTACATGTGAACCTATGTACTTGCATTTTCAGCAATATTGCAG QASPDKRTEADGNSDPNS|enlahteltpmtlaswap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 201 ZNF8-ERVK3-1::ZNF544 ENSG00000267216.1::ENSG00000198131.15 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF8-ERVK3-1 ENSG00000267216.1 lncRNA + + chr19:58278966-58315197:+ chr19:58279108:+ chr19:58790332-58826563:+ chr19:58790474:+ ZNF544 ENSG00000198131.15 protein_coding + + chr19:58228594-58277495:+ chr19:58242053:+ chr19:58739960-58788861:+ chr19:58753419:+ chr19:58280514,chr19:58280505 chr19:58241524,chr19:58241511 NA NA chr19:58791880,chr19:58791871 chr19:58752890,chr19:58752877 NA NA sense sense unknown exon intron duplication low none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 0 0 23 111 3 ENST00000591325.1 unknown downstream upstream duplicates(1),mismatches(2) CCGGCGTTCGGCGAGTCGGGTGGTCCCTTTGGCTGGAGTGCCTCTCTGGTCTGGGGATCACCTCAGGCGCTGTCCTTCACTGGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCG...|...ATTCCTGCAGAATTCAGCGTAGGAAAGGAGGCCTCAGGCACCAGAAGTGTTTGAGAGCAGGAGAGTTCTCAGAAGAGATTGCCTGGGAAATGAGAGCATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 202 ZNF8::ENSG00000283515 ENSG00000278129.2::ENSG00000283515.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF8 ENSG00000278129.2 protein_coding + + chr19:58278955-58302791:+ chr19:58279147:+ chr19:58790321-58814157:+ chr19:58790513:+ ENSG00000283515 ENSG00000283515.1 protein_coding + + chr19:58228914-58315183:+ chr19:58243965:+ chr19:58740280-58826549:+ chr19:58755331:+ chr19:58280514,chr19:58280505 chr19:58241524,chr19:58241511 NA NA chr19:58791880,chr19:58791871 chr19:58752890,chr19:58752877 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none none |HERV-K_REC(100%),KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 4 7 12 54 121 ENST00000621650.2 ENST00000637233.1 downstream upstream duplicates(1),mismatches(1) CCGGCGTTCGGCGAGTCGGGTGGTCCCTTTGGCTGGAGTGCCTCTCTGGTCTGGGGATCACCTCAGGCGCTGTCCTTCACTGGGCGATCCAGCATGGACCCCGAGGACGAAGGGGTAGCGGGAGTGATGTCTGTGGGGCCGCCGGCGGCCCGGCTTCAG|ACTGGTCTTCTGAGGACCTCTGCCCTCTACACAGCGGCCTCTTCAGGTGCAGGGAGGAAATGGAAGCACGTTCTATGCTGGTTCCACCCCAG___GCATCTGTGTGCTTCGAGGATGTGGCTATGGCATTCACACAGGAGGAGTGGGAACAGCTGGACCTGGCCCAGAGGACACTGTACCGAGAG MDPEDEGVAGVMSVGPPAARLQ|tgllrtsalytaassgagrkwkhvlcwfhprhlcasrmwlwhshrrsgnswtwprghcte NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 233 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 MFE296 SRR8615236 SRR8652128 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 42 TRUE 16 WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78115154:+ chr16:78133297-79246564:+ chr16:78149051:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77971850:+ chr16:77822461-78014004:+ chr16:78005747:+ chr16:78135920,chr16:78135923 chr16:77946911,chr16:77946909 NA NA chr16:78169817,chr16:78169820 chr16:77980808,chr16:77980806 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%),short_chain_dehydrogenase(8%)|Zinc-binding_dehydrogenase(13%) KR(0%),WW(100%),adh_short(0%),adh_short_C2(0%)|ADH_zinc_N_2(0%) 2 2 1 104 2 ENST00000683929.1 ENST00000302536.3 downstream upstream none GGACAAGTGTTTTTTGTTGA___CCATATAAATAAAAGAACCACCTACTTGGACCCAAGACTGGCGTTTACTGTGGATGATAATCCGACCAAGCCAACCACCCGGCAAAGATACGACGGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTGGCAAAGTGGTTGTGGTCACTGGAGCTAATTCAGGAATAG|GTGAAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGCAAGTTAATTCTGGATGTAGAAAAGACCCCA...AGAATGTGAAGGATGGTTTGGAAGATGAGGACCCGGCTGAGAAAACTCTTCTGTGCCCCAGTGAACAAATGCTGTAGTCCAGTGCGTGTCGTGTTTGTCTGCAGTCAGCTGAGCTAAAAAGCTGTTGATCACTGTTGTTTTTTGAAGTGCCAATCCCATGCCATGC GQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGI|gegghaadsrprehwqvnsgcrkdp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 FALSE,FALSE 78005747,77850818 TRUE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 234 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 MFE296 SRR8615236 SRR8652128 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 42 TRUE 16 WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78115154:+ chr16:78133297-79246564:+ chr16:78149051:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77977597:+ chr16:77822461-78014004:+ chr16:78011494:+ chr16:78135920,chr16:78135923 chr16:77946911,chr16:77946909 NA NA chr16:78169817,chr16:78169820 chr16:77980808,chr16:77980806 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none WW_domain(100%),short_chain_dehydrogenase(8%)| KR(0%),WW(100%),adh_short(0%),adh_short_C2(0%)| 1 0 1 104 3 ENST00000683929.1 ENST00000302536.3 downstream upstream none GCCAGGTGCCTCCACAGTCAGCCATGGCAGCGCTGCGCTACGCGGGGCTGGACGACACGGACAGTGAGGACGAGCTGCCTCCGGGCTGGGAGGAGgGAACC...AAAAGAACCACCTACTTGGACCCAAGACTGGCGTTTACTGTGGATGATAATCCGACCAAGCCAACCACCCGGCAAAGATACGACGGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTGGCAAAGTGGTTGTGGTCACTGGAGCTAATTCAGGAATAG|ATGGCCAATGACAGCACAGAGAC...ACAGCGAGAACAAGGAGCGGATGCCCTTTATCCAGTAACTGAGGACCCAGGTGGGAGAATGTGAAGGATGGTTTGGAAGATGAGGACCCGGCTGAGAAAAC KRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGI|dgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 FALSE,FALSE 78005747,77850818 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 260 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 MFE296 SRR8615236 SRR8652128 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167661,chr5:32167671 NA NA chr5:32106202,chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167767,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 0 1 1 489 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(1) CACAGACTGGTGGCAGGAGGGCTGCACAGCAGGTGAGCAGTGGGTGAGTGAGCAAAGCTTCCTCTGTTCACAGCCTCTCACCGTCACTCACACTACCACCTGAGCTCTGCCTCCTGTCAGATCAGCAGCAGCATTAGATTCTCAC___ATGGGATGCCTGGTTGCAAGAAAACA...ATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 265 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 22 TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11415937:- chr19:11495017-11530004:- chr19:11526613:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RasGEF_N-terminal_motif(100%)|C-terminal_domain_of_the_ECSIT_protein(26%) RasGEF_N(100%)|ECSIT_C(8%) 24 71 49 360 405 ENST00000380456.8 ENST00000690346.1 upstream downstream duplicates(11),inconsistently_clipped(5),mismatches(7),multimappers(1) GGTACAAGATCTGAGCTTCAACAAGAACCTGAG___GGCTGTGGTGTCAGTGCTGGGCTCCTGGCTGCAGGACCACCCTCAGGATTTCCGAGACCACCCTGCCCATTCGGACCTGGGCAGTGTCCGAACCTTTCTGGGCTGGGCGGCCCCAGGGAGTGCTGAGGCTCAAAAAGCAGAGAAGCTTCTGGAAGATTTTTTGGAGGAGGCTGAGCGAGAGCAGGAAGAGGAGCCGCCTCAGGTGTGGACAG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAG VQDLSFNKNLRAVVSVLGSWLQDHPQDFRDHPAHSDLGSVRTFLGWAAPGSAEAQKAEKLLEDFLEEAEREQEEEPPQVWT|vEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 266 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11411253:- chr19:11495017-11530004:- chr19:11521929:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none RasGEF_N-terminal_motif(100%)|C-terminal_domain_of_the_ECSIT_protein(26%) RasGEF_N(100%)|ECSIT_C(8%) 4 2 52 38 405 ENST00000563726.5 ENST00000690346.1 upstream downstream duplicates(3),mismatches(4),multimappers(1) CGCCTCAGGTGTGGACAG___ACAGAGTCTCGCACTGTTACCCAGGCTGGAGTGCgGTGGCACAATCTTGGCTCACTGCAgCCTCCgCCTCCTcGGCTCAAGCC...GTTGTGGCACATGCCTATAGTCCCAGCTACTTAGGATGCTGAGATGGGAGGATCTCTTGACTCCGGGAAATCAAAGCTGCCGTGAGCTGTGAGCATGCCCCTGCACTCCAGGCGATAGAGCTGGGGGAAGGAGGAATAGTTGTTTCTTCAAATTGAAATCCAAAGATCTACTCAAG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 267 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11415947:- chr19:11495017-11530004:- chr19:11526623:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none RasGEF_N-terminal_motif(100%)|C-terminal_domain_of_the_ECSIT_protein(26%) RasGEF_N(100%)|ECSIT_C(8%) 3 1 47 340 405 ENST00000562663.5 ENST00000690346.1 upstream downstream duplicates(4),mismatches(4),multimappers(1) TCCC?GGGTAGAGATCAAGAAGACAGCGGTACAAGATCTGAGCTTCAACAAGAACCTGAG___GGCTGTGGTGTCAGTGCTGGGCTCCTGGCTGCAGGACCACCCTCAGGATTTCCGAGACCACCCTGCCCATTCGGACCTGGGCAGTGTCCGAACCTTTCTGGGCTGGGCGGCCCCAGGGAGTGCTGAGGCTCAAAAAGCAGAGAAGCTTCTGGAAGATTTTTTGGAGGAGGCTGAGCGAGAGCAGGAAGAGGAGCCGCCTCAG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 268 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11416614:- chr19:11495017-11530004:- chr19:11527288:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none RasGEF_N-terminal_motif(75%)|C-terminal_domain_of_the_ECSIT_protein(26%) RasGEF_N(42%)|ECSIT_C(8%) 3 4 15 558 405 ENST00000562663.5 ENST00000690346.1 upstream downstream duplicates(5),mismatches(2),multimappers(2) GCTCCCAGCCCCATTGCCAATACCTTCCTCCACTATCGAACCAGCAAGGTGAGGGTGCTGAGGGCAGCGCGCCTGGAGCGGCTGGTGGGAGAGgTGG...CCGGACCTTTGTACCCACTGCCTGCCTGCTGGGCTTTCTGCTGCCACCAATGCCACCGCCCCCACCTCCCGGGTCAGTAGCGAACCATAACCTCCGTATTCTC...___GGTAGAGATCAAGAAGACAGCGGTACAAGATCTGAGCTTCAACAAGAACCTGAG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 269 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11416836:- chr19:11495017-11530004:- chr19:11527510:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none RasGEF_N-terminal_motif(57%)|C-terminal_domain_of_the_ECSIT_protein(26%) RasGEF_N(18%)|ECSIT_C(8%) 1 3 9 542 405 ENST00000562663.5 ENST00000690346.1 upstream downstream mismatches(1),multimappers(1) GGCAGCGCAGTCAGCGCAGGAGCCCGGCGGAGGGCCCCGGGGGCAGCCAG___GCTCCCAGCCCCATTGCCAATACCTTCCTCCACTATCGAACCAGCAAGGTGAGGGTGCTGAGGGCAGCGCGCCTGGAGCGGCTGGTGGGAGAGTTGGTGTTTGGAGACCGTGAGCAGGACCCCAGCTTCATGCCCGCCTTCCTGGCCACCTACCGGACCTTTGTACCCACTGCCTGCCTGCTGGGCTTTCTGCTGCCACCAATGCCACCGCCCCCACCTCCCGG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAGTCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 270 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 47 TRUE 17 RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11418671:- chr19:11495017-11530004:- chr19:11529347:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication low none |C-terminal_domain_of_the_ECSIT_protein(26%) |ECSIT_C(8%) 0 1 0 285 405 ENST00000562663.5 ENST00000690346.1 upstream downstream none GGAGGGCCCCGGGGGCAGCCAG|TGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCT...ACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 271 KDM2A::SYT12 ENSG00000173120.15::ENSG00000173227.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 48 TRUE 18 KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67121358:+ chr11:66886734-67025553:+ chr11:66888829:+ SYT12 ENSG00000173227.14 protein_coding + + chr11:67006778-67050863:+ chr11:67021869:+ chr11:66774249-66818334:+ chr11:66789340:+ chr11:67143035,chr11:67143034,chr11:67143035 chr11:67016183,chr11:67016180,chr11:67016180 NA NA chr11:66910506,chr11:66910505,chr11:66910506 chr11:66783654,chr11:66783651,chr11:66783651 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |C2_domain(100%) |C2(100%) 34 70 36 271 137 ENST00000529006.7 ENST00000393946.6 downstream upstream duplicates(10),mismatches(7) TTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCTCCG___TGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTG|GTCCAGGAAATGAAATGAAGACAAAAGCGCCCCCTGTGGGTGAAG___TCACAGTCACTGCAGCAGACATCATGGCTGTGGATGTGGCAGAATACCATCTGAGCG___...GGTCCCCGGGGAGACCCTCATCC...___TCATCAAGAGCCCCCCTGGCTGGGAGGTGGGTGTCTATGCTGC MEPEEERIRYSQRL|vqemk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6860 chr11:67045643-67045708:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Glioblastoma multiforme,Breast invasive carcinoma,Stomach adenocarcinoma CENTRAL_NERVOUS_SYSTEM,BREAST,STOMACH no_match 66999431,66888829|66888829,66888829|66888829 FALSE,TRUE|TRUE,TRUE|TRUE 66812064,66777350|66789340,66797593|66807282 FALSE,FALSE|TRUE,FALSE|FALSE YES,PARTIALLY,PARTIALLY In-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 272 KDM2A::SYT12 ENSG00000173120.15::ENSG00000173227.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 48 TRUE 18 KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67132073:+ chr11:66886734-67025553:+ chr11:66899544:+ SYT12 ENSG00000173227.14 protein_coding + + chr11:67006778-67050863:+ chr11:67021869:+ chr11:66774249-66818334:+ chr11:66789340:+ chr11:67143035,chr11:67143034,chr11:67143035 chr11:67016183,chr11:67016180,chr11:67016180 NA NA chr11:66910506,chr11:66910505,chr11:66910506 chr11:66783654,chr11:66783651,chr11:66783651 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |C2_domain(100%) |C2(100%) 1 2 39 20 137 ENST00000308783.9 ENST00000393946.6 downstream upstream duplicates(2),mismatches(1) CTCACTTGGACAAGAACTCAAGAGCAGAATCTCCG___TGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTT...GAAGAAGAAAGGATTCGTTACAGCCAGAGATTG___GTTCTTGGGGTTTTTCTCTGTCTGTGAGTACTTGGTAAAAAGTTAAACCCTAAAGATAAAAGGCAGCAAATAGTGACCAAACGAATGTTTTTGGCAAATACATTGGTGAAGGCCTCCTTCAG|GTCCAGGAAATGAAATGAAGACAAAAGCGCCCCCTGTGGGTGAAG___TCACAGTCACTGCAGCAGACATCATGGCTGTGGATGTGGCAGAATACCATCTGAGCG___TCATCAAGAGCCCCCCTGGCTGGGAGGTGGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6860 chr11:67045643-67045708:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Glioblastoma multiforme,Breast invasive carcinoma,Stomach adenocarcinoma CENTRAL_NERVOUS_SYSTEM,BREAST,STOMACH no_match 66999431,66888829|66888829,66888829|66888829 FALSE,FALSE|FALSE,FALSE|FALSE 66812064,66777350|66789340,66797593|66807282 FALSE,FALSE|TRUE,FALSE|FALSE YES,PARTIALLY,PARTIALLY In-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 274 CDC42::CELA3A ENSG00000070831.18::ENSG00000142789.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 24 TRUE 49 TRUE 19 CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22078583:+ chr1:22379120-22427853:+ chr1:22405076:+ CELA3A ENSG00000142789.20 protein_coding + + chr1:22001657-22012542:+ chr1:22003003:+ chr1:22328150-22339035:+ chr1:22329496:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Ras_family(16%)|Trypsin(100%) Arf(0%),Ras(0%),Roc(1%)|Trypsin(100%),Trypsin_2(100%) 49 26 38 2146 130 ENST00000656825.1 ENST00000290122.8 downstream upstream duplicates(9),mismatches(18),multimappers(2) ACGCCCCGGTGGAGAAGCTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|CCTCAGGCTATGGCCCACCTTCCTCTCACTCTTCCAGCCGCGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG___GTTTCCCTGCAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTC___GAGGGATCTGACCTACCAGGTGGTGTTGGG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|pqamahlpltlpaalsmvrmrsptagpgrfpcsmrkveasttrvavassppigl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 275 CDC42::CELA3A ENSG00000070831.18::ENSG00000142789.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 49 TRUE 19 CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22078583:+ chr1:22379120-22427853:+ chr1:22405076:+ CELA3A ENSG00000142789.20 protein_coding + + chr1:22001657-22012542:+ chr1:22009705:+ chr1:22328150-22339035:+ chr1:22336198:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Ras_family(16%)|Trypsin(20%) Arf(0%),Ras(0%),Roc(1%)|Trypsin(2%),Trypsin_2(0%) 2 0 1 2146 92 ENST00000656825.1 ENST00000290122.8 downstream upstream multimappers(2) CTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|GGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGgCTTTG...TCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAG___TTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCTGCTAAGAATG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|GDSGGPLNCPTEDGGWQVHGVTSFVSgF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 276 ENSG00000289694::CELA3A ENSG00000289694.1::ENSG00000142789.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 50 TRUE 20 ENSG00000289694 ENSG00000289694.1 protein_coding + + chr1:22025142-22092943:+ chr1:22078583:+ chr1:22351635-22419436:+ chr1:22405076:+ CELA3A ENSG00000142789.20 protein_coding + + chr1:22001657-22012542:+ chr1:22003003:+ chr1:22328150-22339035:+ chr1:22329496:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Trypsin(100%) Arf(0%),Ras(0%),Roc(1%)|Trypsin(100%),Trypsin_2(100%) 49 26 37 2146 130 ENST00000695856.1 ENST00000290122.8 downstream upstream duplicates(9),mismatches(18),multimappers(2) ACGCCCCGGTGGAGAAGCTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|CCTCAGGCTATGGCCCACCTTCCTCTCACTCTTCCAGCCGCGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAG___GTTTCCCTGCAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTC___GAGGGATCTGACCTACCAGGTGGTGTTGGG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|pqamahlpltlpaalsmvrmrsptagpgrfpcsmrkveasttrvavassppigl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 277 ENSG00000289694::CELA3A ENSG00000289694.1::ENSG00000142789.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 50 TRUE 20 ENSG00000289694 ENSG00000289694.1 protein_coding + + chr1:22025142-22092943:+ chr1:22078583:+ chr1:22351635-22419436:+ chr1:22405076:+ CELA3A ENSG00000142789.20 protein_coding + + chr1:22001657-22012542:+ chr1:22009705:+ chr1:22328150-22339035:+ chr1:22336198:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Trypsin(20%) Arf(0%),Ras(0%),Roc(1%)|Trypsin(2%),Trypsin_2(0%) 2 0 1 2146 92 ENST00000695856.1 ENST00000290122.8 downstream upstream multimappers(2) CTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|GGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGgCTTTG...TCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAG___TTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCTGCTAAGAATG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|GDSGGPLNCPTEDGGWQVHGVTSFVSgF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 278 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 25 TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73759763:- chr14:74181825-74256988:- chr14:74226466:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14921918:+ chr3:14852360-14976078:+ chr3:14963425:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |FYVE_zinc_finger(100%),PH_domain(59%) |FYVE(100%),PH(44%) 20 47 32 61 185 ENST00000423556.7 ENST00000285046.10 upstream upstream duplicates(9),mismatches(3) GCGGAAGCCCCGCGAGCGCCGCGGGGAGGCGACGGCGCCTGTTTGTTTTTAAAATCGGGAGTGCGTGCAGGCGGCTGGAGTCCCGGAGGCGACCGAAGGCGGCGACCCGCGGCGGAAGGGGGACAGCCGAGCCCGGAGCCCGGAGCCCGGGCAAGAGCTGG|CTCCTGTGCAGAGAGGGACGAGTGGTATGGCTGTCTGAGCAGAGCCCTCCCTGAGGACTACAAGGCCCAGGCGCTGGCTGCATTCCACCATAGCGTGGAG___ATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGGCCCCCCACCCTGGTGCCTGTCACACACGTCATGATGTGCATGAACTGCGGCTGCGACTTCTCCCTCACCCTGCGGCGTCATCACTGTCACGCCTGTGGCAAG___ATCGTGTGCCGGAACTGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 279 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 26 TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73787102:- chr14:74181825-74256988:- chr14:74253805:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14921918:+ chr3:14852360-14976078:+ chr3:14963425:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |FYVE_zinc_finger(100%),PH_domain(59%) |FYVE(100%),PH(44%) 9 53 15 43 185 ENST00000394071.6 ENST00000285046.10 upstream upstream duplicates(3),mismappers(1),mismatches(2) CAGCCCGGGCCGCACCGCCCGCTCCGCGAGGAAGTGACGACTGCGCCGTCCCGAGAGCAACAAAGTTAGAGTCTGCGGGCCGCACTCGCCTGCGCCCCGCACCCCTCCGAGCAGCCCGGGGATCCAGCACGCAG|CTCCTGTGCAGAGAGGGACGAGTGGTATGGCTGTCTGAGCAGAGCCCTCCCTGAGGACTACAAGGCCCAGGCGCTGGCTGCATTCCACCATAGCGTGGAG___ATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGGCCCCCCACCCTGGTGCCTGTCACACACGTCATGATGTGCATGAACTGCGGCTGCGACTTCTCCCTCACCCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 280 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73787102:- chr14:74181825-74256988:- chr14:74253805:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14922411:+ chr3:14852360-14976078:+ chr3:14963918:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |FYVE_zinc_finger(100%),PH_domain(50%) |FYVE(100%),PH(44%) 0 3 8 43 274 ENST00000394071.6 ENST00000285046.10 upstream upstream none CTGGGTCACAGCCCGGGCCGCACAGCCCGGGCCGCACCGCCCGCTCCGCGAGGAAGTGACGACTGCGCCGTCCCGAGAGCAACAAAGTTAGAGTCTGCGGGCCGCACTCGCCTGCGCCCCGCACCCCTCCGAGCAGCCCGGGGATCCAGCACGCAG|ATACGAGAGAGGCTGGGGGTTAGCCTTGGGGAGAGcCCCCCCACCCTGGTGCCTGTCACACACGTCATGATGTGCATGAACTGCGGCTGCGACTTCTCCCTCACCCTGCGGCGTCATCACTGTCACGCCTGTGGCAAG___ATCGTGTGCCGGAACTGTTCGCGGAACAAGTACCCGCTGAAGTACCTGAAGGACAGGATGGCCAAGGTCTGCGACGGCTGCTTCG...TGAGAG___AGCGGCCTGTGAGCATGAGCTTCCCGCTGTCTTCcCCCCGCTTCTCGGGCAGTGCCTTTTCATCCGTCTTCCAGAGCATTAACCCCTCGACCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 281 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73787102:- chr14:74181825-74256988:- chr14:74253805:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14932577:+ chr3:14852360-14976078:+ chr3:14974084:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |PH_domain(32%) |PH(3%) 1 5 3 43 296 ENST00000394071.6 ENST00000285046.10 upstream upstream none CGCTCCGCGAGGAAGTGACGACTGCGCCGTCCCGAGAGCAACAAAGTTAGAGTCTGCGGGCCGCACTCGCCTGCGCCCCGCACCCCTCCGAGCAGCCCGGGGATCCAGCACGCAG|GACAAAGTGGCCTTGGAGAGTATGCCTCTGCTAGGCTTCACCATTGCTCCAGAAAAGGAAGAGGGCAGCAGTGAAGTAGGACCTATTTTTCACCTTTACCACAAGAAAACCCTATTTTATAGCTTCAAAGCAGAAGATACCAATTCAGCTCAGAG___GTGGATCGAGGCCATGGAAGATGCGAGTGTGTTATAGCAGTTATCAAGCATGTGGACTTGTAACAAATTCTTAGGTCAATATGTGAATGCTTTTAGAAGCTAAGCTGTGGCTCAACTCATCCGGACACACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 282 EPIC1::ATXN10 ENSG00000224271.8::ENSG00000130638.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 27 TRUE 52 TRUE 22 EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:47635353:+ chr22:48026576-48418772:+ chr22:48031102:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45806959:+ chr22:46067678-46241187:+ chr22:46202839:+ chr22:47636277,chr22:47636275 chr22:45799496,chr22:45799491 NA NA chr22:48032026,chr22:48032024 chr22:46195376,chr22:46195371 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Spinocerebellar_ataxia_type_10_protein_domain(75%) |Atx10homo_assoc(35%) 36 19 32 71 641 ENST00000651403.1 ENST00000381061.8 downstream upstream duplicates(5),mismatches(5) CCGGGGCACAGGCAAGCGGACGAGCCAGTTATCCCTCAGAGCTCCTGCTGCCTCGCCCGCTTTCTCTCGGAAACGTGAAGTGTGGCCTCAGCTGAAAGTGAG___GTGGGCCTCATTCAATCAGTTGAATTCTTCAAGAGAGAAAAACTGAAGTCCCTTAGAAGGAAAGAGTTCTGCCTTCAGACTGTCTTTGAACTTAAGACTGTAGCGTCGACTCCTGCCGGAATTTCCAGCCTGCTGGCCAGCTCTGCAGATTCACACTTGCCAGCCTCCACAATC|GTAAATGAGCTGGATGGTATCCCGTTGATCCTGGACAACTGCAACATCAGTGACAGTAACCCCT___TTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGGAGGAACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 283 EPIC1::ATXN10 ENSG00000224271.8::ENSG00000130638.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 52 TRUE 22 EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:47631886:+ chr22:48026576-48418772:+ chr22:48027635:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45806959:+ chr22:46067678-46241187:+ chr22:46202839:+ chr22:47636277,chr22:47636275 chr22:45799496,chr22:45799491 NA NA chr22:48032026,chr22:48032024 chr22:46195376,chr22:46195371 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Spinocerebellar_ataxia_type_10_protein_domain(75%) |Atx10homo_assoc(35%) 2 1 9 136 641 ENST00000651403.1 ENST00000381061.8 downstream upstream duplicates(2),mismatches(1) GCAAACACGAAGCTCTTCCAGAAACGCCCTCACAGACACCCCGGAAGTCACGTACCCACTCTGTAGGTGCCCCGGGGCACAGGCAAGCGGACGAGCCAGTTATCCCTCAGAGCTCCTGCTGCCTCGCCCGCTTTCTCTCGGAAACGTGAAGTGTGGCCTCAGCTGAAAGTGAG|GTAAATGAGCTGGATGGTATCCCGTTGATCCTGGACAACTGCAACATCAGTGACAGTAACCCCT___TTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 284 CHMP6::RPTOR ENSG00000176108.9::ENSG00000141564.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 28 FALSE NA FALSE NA CHMP6 ENSG00000176108.9 protein_coding + + chr17:80991598-81009517:+ chr17:80998420:+ chr17:78965398-78983317:+ chr17:78972220:+ RPTOR ENSG00000141564.16 protein_coding + + chr17:80544819-80966371:+ chr17:80957624:+ chr17:78518619-78940171:+ chr17:78931424:+ chr17:80999721,chr17:80999720 chr17:80953967,chr17:80953963 NA NA chr17:78973521,chr17:78973520 chr17:78927767,chr17:78927763 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Snf7(100%)|WD_domain__G-beta_repeat(100%) Snf7(100%)|WD40(100%) 32 17 29 170 246 ENST00000325167.9 ENST00000306801.8 downstream upstream duplicates(6),low_entropy(1),mismatches(4),multimappers(1) ACCAG___GTGATGTCCATTGAAGAGGTGGAGAGGATCCTGGACGAGACGCAGGAGGCCGTGGAGTACCAGCGG___CAAATAGACGAGCTCCTGGCAGGAAGCTTCACTCAGGAGGATGAAGACGCCATCCTGGAGGAGCTGAGCGCAATCACTCAG___GAACAAATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAAGATCCCAG|GAGCTGGGATGGTGGTGGACTGGGAGCAGGAGACCGGCCTCCTCATGAGCTCAGGAGACGTGCGGATCGTCCGGATCTGGGACACAGACCGTGAGATGAAGGTGCAG___GACATCCCTACGGGCGCAGACAGCTGTGTGACGAGTCTGTCCTGTGATTCCCACCGCTCACTCATCGTGGCTGGCCTCGGTGACGGCTCCATCCGCG QVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLPEKIP|gAGMVVDWEQETGLLMSSGDVRIVRIWDTDREMKVQDIPTGADSCVTSLSCDSHRSLIVAGLGDGSIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 286 MGAT4A::LINC02611 ENSG00000071073.13::ENSG00000226791.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MGAT4A ENSG00000071073.13 protein_coding - - chr2:98619106-98731132:- chr2:98678304:- chr2:99235569-99347595:- chr2:99294767:- LINC02611 ENSG00000226791.9 lncRNA - - chr2:98761098-98775361:- chr2:98769046:- chr2:99377561-99391824:- chr2:99385509:- chr2:98676745,chr2:98676748 chr2:98769969,chr2:98769969 NA NA chr2:99293208,chr2:99293211 chr2:99386432,chr2:99386432 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 35 19 20 295 112 ENST00000393487.6 ENST00000419865.6 upstream downstream duplicates(6),mismatches(3) CACTGCTTTAGCATTTATCACTTCCTTCCTTACTTTGTCTTGGTATACTACATGGCAAAATGGGAAAG___AAAAACTGATTGCTTATCAACGAGAATTCCTTGCTTTGAAAGAACGTCTTCGAATAGCTGAACACAGAATCTCACAGCGCTCTTCTGAATTAAATACGATTGTGCAACAGTTCAAGCGTGTAGGAGCAGAAACAAATGGAAGTAAGGATGCGTTGAATAAGTTTTCAG|GAAAAAAATTTGGACACAGACACACACAGAGGGATGACCACGTGGAGATGCAGGGAGAGGATAGCAGCTACAGGCCAGGGCGAGAGGCCTCAGAGGAAACCAGTCCTGCTGACTCTTTGAACTCGGACTTCCAGCCTCCAGAACT___GAACCACTG TALAFITSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRIAEHRISQRSSELNTIVQQFKRVGAETNGSKDALNKFS|gkkfghrhtqrddhvemqgedssyrpgreaseetspadslnsdfqppelnh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 292 COPB2::COL26A1 ENSG00000184432.11::ENSG00000160963.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 29 FALSE NA FALSE NA COPB2 ENSG00000184432.11 protein_coding - - chr3:139353946-139389736:- chr3:139358998:- chr3:139072788-139108578:- chr3:139077840:- COL26A1 ENSG00000160963.14 protein_coding + + chr7:101362875-101559024:+ chr7:101549171:+ chr7:101006156-101202304:+ chr7:101192452:+ chr3:139358800,chr3:139358803 chr7:101549027,chr7:101549024 NA NA chr3:139077642,chr3:139077645 chr7:101192308,chr7:101192305 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Coatomer_WD_associated_region_(100%),WD_domain__G-beta_repeat(100%)|Collagen_triple_helix_repeat_(20_copies)(39%) Coatomer_WDAD(100%),WD40(100%)|Collagen(59%) 11 36 17 1667 160 ENST00000503326.6 ENST00000313669.12 upstream upstream duplicates(3),mismatches(2) GTGAAACTCTGGAGAGAGAATCTCTCAAAAGTCAATCAGAAAGCAGCAGAATCCCTTGCTGACCCAACAGAGTATGAAAACCTGTTCCCTGGATTAAAAGAAGCCTTTGTTGTTGAAGAATGGGTGAAGGAAACACATGCTGATCTGTGGCCAGCCAAACAATACCCACTTGTCACG|GTCCCCCTGGGCCTCGAGGTCCCCCAGGACCCCCAGGAACACCTGGATCCCAG___GGCCTGGCTGGAGAGCGAGGCACAGTGGGGCCGTCt___GGTGAACCTGGCGTGAAGGGGGAAGAAGGAGAGAAAGCCGCCACTGCAGAG VKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVT|vplglevpqdpqehldprawleseaqwgrlvnla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 293 CPD::GOSR1 ENSG00000108582.12::ENSG00000108587.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPD ENSG00000108582.12 protein_coding + + chr17:30378927-30469989:+ chr17:30423697:+ chr17:28705945-28797007:+ chr17:28750715:+ GOSR1 ENSG00000108587.16 protein_coding + + chr17:30477362-30527592:+ chr17:30510880:+ chr17:28804380-28854610:+ chr17:28837898:+ chr17:30424863,chr17:30424861 chr17:30505842,chr17:30505837 NA NA chr17:28751881,chr17:28751879 chr17:28832860,chr17:28832855 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Carboxypeptidase_regulatory-like_domain(34%),Zinc_carboxypeptidase(48%)|Snare_region_anchored_in_the_vesicle_membrane_C-terminus(82%) CarboxypepD_reg(15%),Peptidase_M14(41%)|V-SNARE_C(38%) 22 18 24 358 390 ENST00000225719.9 ENST00000225724.9 downstream upstream duplicates(8),mismatches(1) TCCGGGTGTCCATGAACCAG___GTGAACCAGAATTTAAGTACATTGGAAATATGCATGGAAATGAAGTGGTTGGAAGAGAACTGCTGTTGAACCTCATAGAATACCTTTGTAAGAACTTTGGAACAGACCCTGAAGTCACAGATTTGGTTCATAACACTAGAATTCACCTTATGCCATCCATGAATCCTGATGGGTATGAAAAGTCCCAGGAAG|CTCAGATCGTCTGATAGAAGAGACAATAAG___CATTGCTATGGCAACAAAAGAAAATATGACTTCACAGAGAGGAATGTTGAAGTCAATTCACAGCAAAATGAACACTTTGGCC PGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVHNTRIHLMPSMNPDGYEKSQE|aqiv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 295 GON4L::DDX19B ENSG00000116580.20::ENSG00000157349.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 30 TRUE 54 TRUE 23 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155820606:- chr1:155719450-155829191:- chr1:155790397:- DDX19B ENSG00000157349.17 protein_coding + + chr16:70289663-70335305:+ chr16:70312609:+ chr16:70323566-70369208:+ chr16:70346512:+ chr1:155819568,chr1:155819574,chr1:155819572 chr16:70300550,chr16:70300389,chr16:70300546 NA NA chr1:155789359,chr1:155789365,chr1:155789363 chr16:70334453,chr16:70334292,chr16:70334449 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%) |DEAD(100%),Helicase_C(100%) 18 26 16 202 215 ENST00000615926.4 ENST00000566216.5 upstream upstream duplicates(6),mismatches(2),multimappers(11) CCGAAACATCCTTCAT___GAAGTAATCACAAATGAACACGTGGTAGCTATGATGAAAGCAGCCATCAGTGAGACGGAAGATATGCCAATGTTT___GAGCCTAAAATGACACGCTCTAAACTGAAGGAAGTAGTGGAAAAAGGAGTG|TTGAGCAACTTGCATCTTAAGGAAGAGAAAATCAAACCAGATACCAATG___GTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGC...CGGGATCCAAA RNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGV|LSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 296 GON4L::DDX19B ENSG00000116580.20::ENSG00000157349.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 54 TRUE 23 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155820606:- chr1:155719450-155829191:- chr1:155790397:- DDX19B ENSG00000157349.17 protein_coding + + chr16:70289663-70335305:+ chr16:70314902:+ chr16:70323566-70369208:+ chr16:70348805:+ chr1:155819568,chr1:155819574,chr1:155819572 chr16:70300550,chr16:70300389,chr16:70300546 NA NA chr1:155789359,chr1:155789365,chr1:155789363 chr16:70334453,chr16:70334292,chr16:70334449 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%) |DEAD(100%),Helicase_C(100%) 1 1 10 202 278 ENST00000615926.4 ENST00000568460.5 upstream upstream duplicates(2),multimappers(8) AACACAAAACAGAGAGGAAGAAAGAAAGATTGACAATTCACATATATCTACTTTGGAAAATATTGAAAACTTTAAAGGAGAAAATAAAAATCACCCGTAGC...CCGAAACATCCTTCAT___GAAGTAATCACAAATGAACACGTGGTAGCTATGATGAAAGCAGCCATCAGTGAGACGGAAGATATGCCAATGTTT___GAGCCTAAAATGACACGCTCTAAACTGAAGGAAGTAGTGGAAAAAGGAGTG|GTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCC RNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGV|VLLSRPMPMQRRQMKKRKrtelpspysts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 297 GON4L::ENSG00000260537 ENSG00000116580.20::ENSG00000260537.2 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 55 TRUE 24 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155820606:- chr1:155719450-155829191:- chr1:155790397:- ENSG00000260537 ENSG00000260537.2 protein_coding + + chr16:70299194-70372582:+ chr16:70312609:+ chr16:70333097-70406485:+ chr16:70346512:+ chr1:155819568,chr1:155819574,chr1:155819572 chr16:70300550,chr16:70300389,chr16:70300546 NA NA chr1:155789359,chr1:155789365,chr1:155789363 chr16:70334453,chr16:70334292,chr16:70334449 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%) |DEAD(100%),Helicase_C(100%) 18 26 16 202 215 ENST00000615926.4 ENST00000567706.1 upstream upstream duplicates(6),mismatches(2),multimappers(11) CCGAAACATCCTTCAT___GAAGTAATCACAAATGAACACGTGGTAGCTATGATGAAAGCAGCCATCAGTGAGACGGAAGATATGCCAATGTTT___GAGCCTAAAATGACACGCTCTAAACTGAAGGAAGTAGTGGAAAAAGGAGTG|TTGAGCAACTTGCATCTTAAGGAAGAGAAAATCAAACCAGATACCAATG___GTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGC...CGGGATCCAAA RNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGV|LSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 298 GON4L::ENSG00000260537 ENSG00000116580.20::ENSG00000260537.2 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 55 TRUE 24 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155820606:- chr1:155719450-155829191:- chr1:155790397:- ENSG00000260537 ENSG00000260537.2 protein_coding + + chr16:70299194-70372582:+ chr16:70314902:+ chr16:70333097-70406485:+ chr16:70348805:+ chr1:155819568,chr1:155819574,chr1:155819572 chr16:70300550,chr16:70300389,chr16:70300546 NA NA chr1:155789359,chr1:155789365,chr1:155789363 chr16:70334453,chr16:70334292,chr16:70334449 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%) |DEAD(100%),Helicase_C(100%) 1 1 10 202 278 ENST00000615926.4 ENST00000443119.7 upstream upstream duplicates(2),multimappers(8) AACACAAAACAGAGAGGAAGAAAGAAAGATTGACAATTCACATATATCTACTTTGGAAAATATTGAAAACTTTAAAGGAGAAAATAAAAATCACCCGTAGC...CCGAAACATCCTTCAT___GAAGTAATCACAAATGAACACGTGGTAGCTATGATGAAAGCAGCCATCAGTGAGACGGAAGATATGCCAATGTTT___GAGCCTAAAATGACACGCTCTAAACTGAAGGAAGTAGTGGAAAAAGGAGTG|GTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCC RNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGV|vllsrpmpmqrrqmkkrkrtelpspysts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 301 NUFIP2::ENSG00000264808 ENSG00000108256.9::ENSG00000264808.2 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUFIP2 ENSG00000108256.9 protein_coding - - chr17:29255839-29294148:- chr17:29293783:- chr17:27582857-27621166:- chr17:27620801:- ENSG00000264808 ENSG00000264808.2 lncRNA - - chr17:29333910-29390777:- chr17:29370305:- chr17:27660928-27717795:- chr17:27697323:- chr17:29288531,chr17:29288544 chr17:29384465,chr17:29384465 NA NA chr17:27615549,chr17:27615562 chr17:27711483,chr17:27711483 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Nuclear_fragile_X_mental_retardation-interacting_protein_2(0%)| NUFIP2(0%)| 20 15 15 664 54 ENST00000225388.9 ENST00000577218.1 upstream downstream duplicates(3),mismatches(1) CCGCTTTCAATGGAGGAGAAGCCCGGCCAGCCACAGCCTCAGCACCATCACAGCCACCACCATCCGCACCATCACCCTCAGCAGCAGCAGCAGCAGCCGCACCACCACCACCATTATTATTTCTACAACCACAGCCACAACCACCACCACCACCATCATCACCAGCAGCCTCACCAATACCTGCAGCATGGAGCCGAGGGCAGCCCCAAGGCCCAGCCAAAGCCGCTGAAACATGAGCAGAAACACACCCTCCAGCAGCACCAGGAAACGCCGAAGAAGAAAACAG|TGGCAAGAGGAAAAACAGCAAGTCCAACTCCACAGGTTTGTAAGGAGCAGCCAGCTTTGATTTGCCCTGCACGTCATAGCTCAGAAAGTTTTGCTGCTCATACAATCCTCAGCAAAGACCATCCATTCATTCCGGGATTCCCCCAGCTCATGGACACAGGTCGGTCTCTAACTACAGACAGCCTTCTTCTGGAAACTCTCACCAGCCTGATTTCTAAACTCCCAGTCCACCTTCACATTGTTTGCCTGTTTTCAGTGCC MEEKPGQPQPQHHHSHHHPHHHPQQQQQQPHHHHHYYFYNHSHNHHHHHHHQQPHQYLQHGAEGSPKAQPKPLKHEQKHTLQQHQETPKKKT|vargktasptpqvckeqpalicparhssesfaahtilskdhpfipgfpqlmdtgrslttdsllletltslisklpvhlhivclfsv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 302 SMARCC1::LINC02585 ENSG00000173473.11::ENSG00000228350.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47610066:- chr3:47626759-47823596:- chr3:47651556:- LINC02585 ENSG00000228350.1 lncRNA + - chr3:48663776-48669174:+ chr3:48664960:- chr3:48701209-48706607:+ chr3:48702393:- chr3:47601915,chr3:47602510,chr3:47602536 chr3:48669382,chr3:48669379,chr3:48669402 NA NA chr3:47643405,chr3:47644000,chr3:47644026 chr3:48706815,chr3:48706812,chr3:48706835 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Myb-like_DNA-binding_domain(100%),SWIRM-associated_domain_at_the_C-terminal(100%),SWIRM-associated_domain_at_the_N-terminal(100%),SWIRM-associated_region_1(100%),SWIRM_domain(100%)| Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),SWIRM(100%),SWIRM-assoc_1(100%),SWIRM-assoc_2(100%),SWIRM-assoc_3(100%)| 15 18 15 588 82 ENST00000254480.10 unknown upstream downstream duplicates(2),low_entropy(2),mismatches(2) AACAGCTGAAGTATGCTGAATTACGAGCACGACAGCAAATGGAACAGCAGCAGCATGGCCAGAACCCTCAACAGGCACACCAGCACTCAGGAGGACCTGGCCTGGCCCCACTTGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAACAGCCCCCTCCCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCCCAGCCAG|ATGCGGATCTCCCCTTGGTCATTCAAGGCACTGCTCAGGCATCTTATGCAAGAAGGCtTCCCAGGTTGCGAAGGTGACTCAGACGCCTCCTTTGGGACTCCAACACCCTTCCCCGGCAGAGCCCCTGCCTGTCTGCCTCCGTGGTGTCAGGTTTTGTGCCCTCTACTCACTAGATTGTGGACACAGAAAGCGCTG QLKYAELRARQQMEQQQHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQP|dadlplviqgtaqasyarrlprlrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 303 NIPBL::WDR70 ENSG00000164190.19::ENSG00000082068.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 31 FALSE NA FALSE NA NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:37010225:+ chr5:36876871-37066515:+ chr5:37010327:+ WDR70 ENSG00000082068.9 protein_coding + + chr5:37379285-37753435:+ chr5:37697655:+ chr5:37379387-37753537:+ chr5:37697757:+ chr5:37014147,chr5:37014147 chr5:37657814,chr5:37657811 NA NA chr5:37014249,chr5:37014249 chr5:37657916,chr5:37657913 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |WD_domain__G-beta_repeat(38%) |WD40(45%) 21 12 12 81 114 ENST00000282516.13 ENST00000265107.9 downstream upstream duplicates(4),mismappers(2),mismatches(4) TGAAAAACATAGGCAGTTAATTTTGGAAGAAATTTTTACTTCACTTGCAAGATTACCAACCAGCAAGAGGAGTTTAAGGAACTTCAG___GTTAAACAGTAGTGATATGGATGGAGAACCTATGTATATTCAGATGGTTACAGCACTGGTTTTACAACTTATTCAGTGTGTGGTACACTTACCATCATCAGAGAAGGACTCTAATGCAGAAGAAGATTCAAATAAAAAA|GTTCATCCTAAGTTCCACTATAAACAGGCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCTATGATGGTAATGTCCTTGCCTCTCGTGGAG___GTGACGATTCATTAAAATTATGGGACATCCGACAATTTAATAAACCACTTTTTTCAGCCTCGGGTCTTCCCACCATGTTCCCAAT___GACTGACTGCTGTTTCAGTCCAG EKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDMDGEPMYIQMVTALVLQLIQCVVHLPSSEKDSNAEEDSNKK|VHPKFHYKQAHDSGTDTSCVTFSYDGNVLASRGGDDSLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 304 PLEKHG1::MTHFD1L ENSG00000120278.17::ENSG00000120254.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 32 TRUE 57 TRUE 25 PLEKHG1 ENSG00000120278.17 protein_coding + + chr6:150599883-150843665:+ chr6:150650786:+ chr6:150921019-151164801:+ chr6:150971922:+ MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150918577:+ chr6:151186815-151423023:+ chr6:151239713:+ chr6:150652072,chr6:150652064 chr6:150909093,chr6:150909079 NA NA chr6:150973208,chr6:150973200 chr6:151230229,chr6:151230215 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Formate--tetrahydrofolate_ligase(100%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__NAD(P)-binding_domain(2%) |FTHFS(100%) 5 32 8 48 237 ENST00000696526.1 ENST00000611279.4 downstream upstream duplicates(3),inconsistently_clipped(1),mismappers(1) CCTCCCCGCCCGACCTGCGAGCGCCGCCCGGGCATGCGAAGCCGTCCCTCCCCGG___GTGAAGACTGATGAGAAGAGTCTGTGGGTGAAGACATTGAAAAGGTTTCAACTATAAAA|GGAAGGTTGGGTGTGGCTCTCCAAGAATACATTTTGGTGGACTCATTGAGGAAGATGATGTGATTCTCCTTGCTGCAGCTCTGCGAATTCAG___AACATGGTCAGTAGTGGAAGGAGATGGCTTCGTGAACAGCAGCACAGGCGGTGGAGACTTCACTGCTTGAAACTTCAGCCTCTCTCCCCTGTGCCAAG___TGACATTGAGATTTCAAGAGGACAAACTCCAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA TRUE hsa-mir-12131 chr6:151102675-151102776:+ FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 305 PLEKHG1::MTHFD1L ENSG00000120278.17::ENSG00000120254.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 57 TRUE 25 PLEKHG1 ENSG00000120278.17 protein_coding + + chr6:150599883-150843665:+ chr6:150650786:+ chr6:150921019-151164801:+ chr6:150971922:+ MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150912668:+ chr6:151186815-151423023:+ chr6:151233804:+ chr6:150652072,chr6:150652064 chr6:150909093,chr6:150909079 NA NA chr6:150973208,chr6:150973200 chr6:151230229,chr6:151230215 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none |Formate--tetrahydrofolate_ligase(100%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__NAD(P)-binding_domain(2%) |FTHFS(100%) 0 1 8 48 19 ENST00000696526.1 ENST00000421497.1 downstream upstream none CCGGCAGCCCGAGCCGGCGCAGCGCAGCCCGCACCCTCCCCGCCCGACCTGCGAGCGCCGCCCGGGCATGCGAAGCCGTCCCTCCCCGG___GTGAAGACTGATGAGAAGAGTCTGTGGGTGAAGACATTGAAAAGGTTTCAACTATAAAA|AAAGTTTGATTATCATTAGAAGAATGGCCATCTTTTAAAGTGATTCATTGACTTGTCCCTGGAGAAATCATGAGTTAGATGAGAGTGTTTAGTGGGAAGTGAAAAGACCCGTCCACGGTTTCGGATGAGATCCTCGTTGGACTGTGATCCCAGGATATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA TRUE hsa-mir-12131 chr6:151102675-151102776:+ FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 310 PHACTR4::MGAT3 ENSG00000204138.13::ENSG00000128268.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHACTR4 ENSG00000204138.13 protein_coding + + chr1:28369582-28500364:+ chr1:28407463:+ chr1:28696093-28826876:+ chr1:28733974:+ MGAT3 ENSG00000128268.12 protein_coding + - chr22:39457012-39492194:+ chr22:39467806:- chr22:39853017-39888199:+ chr22:39863811:- chr1:28456351,chr1:28456348 chr22:39474452,chr22:39474455 NA NA chr1:28782862,chr1:28782859 chr22:39870457,chr22:39870460 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 8 14 16 273 40 ENST00000632421.1 unknown downstream downstream mismappers(2),mismatches(2) TCCGGCTGCTGCCTGGCGGCCAACGGGCCAGGTAGGATTTCCGGGAGAGGCTGCTGTGGAGGCTGAGGAGGCGGCGGCGGAGATCTGG___AAACAGTATCTCACCTCCCTAAACTGGTTAATAGTGGCATGGAAGATCCATTTG|ACTGAGCCGAGATTGCCATTGCACTCTAGCCTGGGCGACAGATCCAGACTCCATCTGAAAGAAACGAAACGAAACGAAACAAAACGAAACAGATCCAGACTCTGTCTGAAAGAAAAGAAACGAAATGAAACAAAACGAAACGAAACGAAAAGAAAAGAAAAGAAAAAAGAAGGAAGCAAGCAAGCTAGCTCTCCATCACAGGTCCCGTGTCGTGTCCATGTGTCTCCTCTTTGGGACACTGTACTTCGTATTCTCTTCGCGGTGCCCAGCAGCAGGGCTCCTGC MEDPF|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 313 CDC42::ENSG00000285959 ENSG00000070831.18::ENSG00000285959.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 59 FALSE NA CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22078583:+ chr1:22379120-22427853:+ chr1:22405076:+ ENSG00000285959 ENSG00000285959.1 lncRNA + + chr1:21983606-22030617:+ chr1:22009705:+ chr1:22310099-22357110:+ chr1:22336198:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Ras_family(16%)| Arf(0%),Ras(0%),Roc(1%)| 2 0 1 2146 92 ENST00000656825.1 ENST00000650360.1 downstream upstream multimappers(2) CTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|GGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGgCTTTG...TCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAG___TTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCTGCTAAGAATG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|gdsggplncptedggwqvhgvtsfvsgf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 315 ENSG00000289694::ENSG00000285959 ENSG00000289694.1::ENSG00000285959.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 60 FALSE NA ENSG00000289694 ENSG00000289694.1 protein_coding + + chr1:22025142-22092943:+ chr1:22078583:+ chr1:22351635-22419436:+ chr1:22405076:+ ENSG00000285959 ENSG00000285959.1 lncRNA + + chr1:21983606-22030617:+ chr1:22009705:+ chr1:22310099-22357110:+ chr1:22336198:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none Arf(0%),Ras(0%),Roc(1%)| 2 0 1 2146 92 ENST00000695856.1 ENST00000650360.1 downstream upstream multimappers(2) CTGAG___GTCATCATCAGATTTGAAATATTTAAAGTGGATACAAAACTATTTCAGCAATGCAGACAATTAAGTGTGTTGTTGTGGGCGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTTCCATCGGAATATGTACCGACT|GGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGgCTTTG...TCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAG___TTGGGCAAACTGCGGCTCAGAAAGATAAAGAACTTCTCCGGAGCGAAAAAGCTGCTAAGAATG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPT|gdsggplncptedggwqvhgvtsfvsgf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 316 AK6::ENSG00000249295 ENSG00000085231.14::ENSG00000249295.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 61 TRUE 26 AK6 ENSG00000085231.14 protein_coding - - chr5:69350984-69370013:- chr5:69355649:- chr5:68646811-68665840:- chr5:68651476:- ENSG00000249295 ENSG00000249295.1 lncRNA - - chr5:69477472-69502466:- chr5:69477675:- chr5:68773299-68798293:- chr5:68773502:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none AAA_domain(86%)| AAA(100%),AAA_17(100%),AAA_18(80%),TFIID-31kDa(100%)| 15 12 7 800 68 ENST00000380822.9 ENST00000514270.1 upstream downstream duplicates(8),low_entropy(1),mismatches(4) GGAAAAACCACACTAGGCAAAGAACTTGCGTCAAAATCAGGACTGAAATACATTAATGTGGGTGATTTAGCTCGAGAAG___AGCAATTGTATGATGGCTATGATGAAGAGTATGACTGTCCCATTTTAGATGAAGACAGA___GTAGTTGATGAGTTAGATAACCAAATGAGAGAAGGTGGAGTTATTGTTGATTACCATGGTTGTGATTTCTTCCCTGAACGCTGGTTTCATATAGTTTTTGTGCTGAGAACAGATACCAATGTATTGTACGAAAGACTTGAAACAAG|TGTACAATGTCTATGTAAGCACAACAAGAAAGCAACTTAACTGCCTGCAGCATCAGACCAAGTTCCTGGATCATAAGTTTGAAAGCAGCTTCTAGATGACGCTTGTGGATATTTGGAATAATATCTACTAATTTCTGTTAAGCAGCTATGTTTCAACTCCACTTCAATAAAAACAGCCAAATTTCT GKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETs|vqclckhnkkat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 317 AK6::ENSG00000249295 ENSG00000085231.14::ENSG00000249295.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 61 TRUE 26 AK6 ENSG00000085231.14 protein_coding - - chr5:69350984-69370013:- chr5:69366503:- chr5:68646811-68665840:- chr5:68662330:- ENSG00000249295 ENSG00000249295.1 lncRNA - - chr5:69477472-69502466:- chr5:69477675:- chr5:68773299-68798293:- chr5:68773502:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none AAA_domain(29%)| AAA(100%),AAA_17(22%),AAA_18(18%)| 0 0 0 3393 68 ENST00000380822.9 ENST00000514270.1 upstream downstream mismatches(1) GGTACACCAGGGGTTGGAAAAACCACACTAGGCAAAGAACTTGCGTCAAAATCAGGACTGAAATACATTAATGTGGGTGATTTAGCTCGAGAAG|TGTACAATGTCTA GTPGVGKTTLGKELASKSGLKYINVGDLARE|vynv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 323 RAB6A::MRPL48 ENSG00000175582.20::ENSG00000175581.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB6A ENSG00000175582.20 protein_coding - - chr11:73675638-73761137:- chr11:73707420:- chr11:73386683-73472182:- chr11:73418465:- MRPL48 ENSG00000175581.14 protein_coding + - chr11:73787872-73865133:+ chr11:73844687:- chr11:73498917-73576178:+ chr11:73555732:- chr11:73702894,chr11:73702897 chr11:73850657,chr11:73850657 NA NA chr11:73413939,chr11:73413942 chr11:73561702,chr11:73561702 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(96%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%)| Arf(65%),MMR_HSR1(100%),Ras(65%),Roc(65%),SRPRB(100%)| 18 5 7 609 12 ENST00000310653.10 unknown upstream downstream duplicates(6),low_entropy(1),mismappers(1),mismatches(1) GTGATGTTATCATCATGCTAGTAGGAAATAAAACAGATCTTGCTGACAAGAG___GCAAGTGTCAATTGAGGAGGGAGAGAGGAAAGCCAAAGAGCTGAATGTTATGTTTATTGAAACTAGTGCAAAAGCTGGATACAATGTAAAGCAG|GTTACCCCACCTACAAACTGAAGTTCTCCTGGGAAGGAAAGAGCAGCTTCCCTTGCCATTCTAGGCTGTGACATCAGCCAATGCAAGGAGAGAATATTGCTGTCATTACTTGAATACATGAATTACTTG DVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ|vtpptn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 324 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 36 TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770993:- chr11:767220-777488:- chr11:770993:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(1%) 6 5 17 222 391 ENST00000319863.13 ENST00000449825.5 upstream downstream duplicates(1),mismatches(1) GCCTGACAGGG___CCCTCTGTGTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCGGGCGCCTGCTTCAGTG___CAAGCGAGCCTGACGCTGTCCACGTCGTGCTGGACCGCCACCTGGTCACAGGCCAGAATGCCAGCTCCACTGTCCCGGCCGTGCAGAACCTGCTCTTCCTCTGTGGCAGCCG|GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGtCTCAGAGCACTTCTTCGAGTACAAGAA___GAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAG___TCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTGGGAGCTGGGCCAGGGCCTGGACTACTTCTACGACCTGCTCTAGGTGGGCATTGCGGCCTCCGCGGTGGACGTGTTCT LTGPSVCELVRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSr|YIQTLKDHRPRMVWDSQvSEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 325 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 37 TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770314:- chr11:767220-777488:- chr11:770314:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(1%) 2 2 21 191 391 ENST00000397472.6 ENST00000449825.5 upstream downstream duplicates(1),mismatches(1) GGG___CCCTCTGTGTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCGGGCGCCTGCTTCAGTG___GAGCAGCAGCCTCCTGCCCCAAGGCCGACCGGCACTGGCAGCACTTTCCTGTTGAAGAAATCTTCCTGGCGTGTGGTTTCAAAGT|GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGtCTCAGAGCACTTCTTCGAGTACAAGAA___GAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAG___TCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTG GPSVCELVRAPGFARLPLVVEDFVKDSGACFSGAAASCPKADRHWQHFPVEEIFLACGFKv|YIQTLKDHRPRMVWDSQvSEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 326 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:771333:- chr11:767220-777488:- chr11:771333:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(1%) 5 5 12 268 391 ENST00000319863.13 ENST00000449825.5 upstream downstream duplicates(1),mismatches(2) CCCATCTGCGCCGTCGGCCACGGTGTCGCCGCCCTGTGCTGTGCCACCAACGAGGACAGATCCTGGGTGTTCGACAGCTACAGCCTGACAGGG___CCCTCTGTGTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCGGGCGCCTGCTTCAGTG|GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGtCTCAGAGCACTTCTTCGAGTACAAGAA___GAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAG___TCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTG PICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFS|gtsrh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 327 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770679:- chr11:767220-777488:- chr11:770679:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(1%) 1 2 17 135 391 ENST00000354286.8 ENST00000449825.5 upstream downstream duplicates(1),mismatches(1) ATTGTTGGAGGCCTCCTGGAATCAGCTCTGAGGGGGTGTCGGCTCTCCTGGAGGGTCCAAACCCCCATCCTCCTGCATGTTCTCTG|GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGtCTCAGAGCACTTCTTCGAGTACAAGAA___GAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAG___TCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 328 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770993:- chr11:767220-777488:- chr11:770993:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:874910:- chr11:867859-915058:- chr11:874910:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(15%) 0 1 17 222 17 ENST00000319863.13 ENST00000528534.1 upstream downstream duplicates(1),mismatches(1) GTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCGGGCGCCTGCTTCAGTG___CAAGCGAGCCTGACGCTGTCCACGTCGTGCTGGACCGCCACCTGGTCACAGGCCAGAATGCCAGCTCCACTGTCCCGGCCGTGCAGAACCTGCTCTTCCTCTGTGGCAGCCG|GAAGCTGTGCACCACCAGGCTGTGTCTTCTGTCTGCTGCCTCCAGGACA...CATACCATGACTGCTCTACCTTTGGAGCCAGGACAGCCCTAGCAGCCG___GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGG VRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSr|klcttrlcllsaasr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 329 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:771333:- chr11:767220-777488:- chr11:771333:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:874910:- chr11:867859-915058:- chr11:874910:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(15%) 2 1 12 268 17 ENST00000354286.8 ENST00000528534.1 upstream downstream duplicates(1),mismatches(1) CGAGTCCATCGATG___AACCCATCTGCGCCGTCGGCCACGGTGTCGCCGCCCTGTGCTGTGCCACCAACGAGGACAGATCCTGGGTGTTCGACAGCTACAGCCTGACAGGG___CCCTCTGTGTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCGGGCGCCTGCTTCAGTG|GAAGCTGTGCACCACCAGGCTGTGTCTTCTGTCTGCTGCCTCCAGGACACGGAATCGTTTTCTAATGGTGGCTCAGGGCGGCTCACAGCATACCATGACTGCTCTACCTTTGGAGCCAGGACAGCCCTAGCAGCCGGTGGG ESIDEPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFS|gscappgcvfcllppghgivf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 330 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:775066:- chr11:767220-777488:- chr11:775066:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Glycosyl_hydrolases_family_18(21%) |Glyco_hydro_18(1%) 1 0 0 359 391 ENST00000319863.13 ENST00000449825.5 upstream downstream none CCTTCCTCCACTGTTTCACGATGGCCAGCACCGCCTTCAACCTGCAGGTGGCCACCCCTGGG|GTACATCCAGACACTGAAGGACCACAGGCCCCGGATGG FLHCFTMASTAFNLQVATPG|vhpdtegpqapd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 336 PHACTR4::PHACTR1 ENSG00000204138.13::ENSG00000112137.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHACTR4 ENSG00000204138.13 protein_coding + + chr1:28369582-28500364:+ chr1:28369825:+ chr1:28696093-28826876:+ chr1:28696336:+ PHACTR1 ENSG00000112137.19 protein_coding + - chr6:12716312-13290446:+ chr6:12811058:- chr6:12716544-13290678:+ chr6:12811290:- chr1:28375573,chr1:28375613 chr6:12820246,chr6:12820246 NA NA chr1:28702084,chr1:28702124 chr6:12820478,chr6:12820478 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 2 19 1 350 57 ENST00000632421.1 unknown downstream downstream mismatches(2) CCGGCTGCTGCCTGGCGGCCAACGGGCCAGGTAGGATTTCCGGGAGAGGCTGCTGTGGAGGCTGAGGAGGCGGCGGCGGAGATCTGG|GCTATGGAAGAAGTCCTCAGAGCACCCACTGAATCTACACATGAGGCAAAGAAACATCTAAGAGGAGTGAGGACAGGCAACTGACACAAAGCGCGTCAATGAAGAAACGGACTGCTCCCCAAGTGTGCCCTGCCTGATACTCATGGGCAACTGGGTGACCAAGCAGGCTCTTTCTTGAGGAGTTAGAATGTGAGAGACATATGGAGAAGACATACAATAGCATAGTGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 341 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 39 TRUE 66 TRUE 28 BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75605864:+ chr17:73583881-73622929:+ chr17:73601945:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Peptidase_C1-like_family(89%)|FERM_central_domain(100%),MyTH4_domain(100%),Myosin_head_(motor_domain)(0%),Variant_SH3_domain(100%) Peptidase_C1_2(57%)|FERM_M(100%),MyTH4(100%),Myosin_head(0%),SH3_2(100%),SH3_9(100%) 8 4 9 651 72 ENST00000261714.11 ENST00000645453.3 upstream upstream duplicates(1),mismatches(3) TGTCAAGCCACTCTTCAATATGGAAGATAAG___ATTTGTTTAGTGAATGACCCTAGGCCCCAGCACAAGTACAACAAACTTTACACAGTGGAATACTTAAGCAATATGGTTGGAGGGAGAAAAACTCTATACAACAACCAGCCCATTGcCTTCCTGAAAAAGAT...CTTCAATAGCAAGCTGGGCCTCAGTGACATGAATCT___CTATGACCATGAGTTAGTGTTTGGTGTCTCCTTGAAGAACATGAATAAAGCGGAGAGGCTGACTTTTGGTGAGTCACTTATGACCCACGCCATGACCTTCACTGCTGTCTCAGAGAAG___GATGATCAGGATGGTGCTTTCACAAAATGGAGAGTGGAGAATTCATGGGGTGAAGACCATGGCCACAAAG|GTCCTGCTGCAGGAGCAGGGCTGGCAGCGGCTGGAGGAGCTCCGGGACCAGCAGCGCTCCCAGGCCCTGGTCGACCTGCACCGCAGCTTCCACACCTGCATCTCCCGCCAGCGCGTCCTGCCCCGGATGCAGGCTCaCATGCGTGGGTTCCAGGCCAG___GAAGCGGTACCTCCGGCGGCGGGCAGCTTTGGGACAGCTGAACACCATCCTGCTGGTGGCCCAGCCCCTGCTCCAGAGGCGGCAG FNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHK|gpaagaglaaaggapgpaalpgpgrpapqlphlhlpparpapdagshawvpgqeavppaagsfgtaehhpaggpapapeaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 342 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 66 TRUE 28 BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75605504:+ chr17:73583881-73622929:+ chr17:73601585:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Peptidase_C1-like_family(89%)|FERM_central_domain(100%),MyTH4_domain(100%),Myosin_head_(motor_domain)(6%),Variant_SH3_domain(100%) Peptidase_C1_2(57%)|FERM_M(100%),MyTH4(100%),Myosin_head(2%),SH3_2(100%),SH3_9(100%) 2 1 11 651 21 ENST00000261714.11 ENST00000645453.3 upstream upstream mismatches(3) CTGACTTTTGGTGAGTCACTTATGACCCACGCCATGACCTTCACTGCTGTCTCAGAGAAG___GATGATCAGGATGGTGCTTTCACAAAATGGAGAGTGGAGAATTCATGGGGTGAAGACCATGGCCACAAAG|CTTCCAGGCCCTGGGGTCAGAAGGGCAGGAAGACCTCTCTGACCGGGAGAAGTGTGGTGCCGTCCTGAGCCAGGTGCTGGGGGCCGAATCACCTCTCTATCACCTTGGAGCCACCAAG___GTCCTGCTGCAGGAGCAGGGCTGGCAGCGGCTGGAGGAGCTCCGGGACCAGCAGCGCTCCCAGGCCCTGGTCGACCTGCACCGCAGCTTCCA LTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHK|asrpwgqkgrktsltgrsvvps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 343 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 66 TRUE 28 BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75610166:+ chr17:73583881-73622929:+ chr17:73606247:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Peptidase_C1-like_family(89%)|FERM_central_domain(100%),MyTH4_domain(100%),Variant_SH3_domain(100%) Peptidase_C1_2(57%)|FERM_M(100%),MyTH4(100%),SH3_2(100%),SH3_9(100%) 2 0 2 651 52 ENST00000261714.11 ENST00000645453.3 upstream upstream mismatches(1) GTGTGGTTTGGCTGTGATGTTGGAAAACACTTCAATAGCAAGCTGGGCCTCAGTGACATGAATCT___CTATGACCATGAGTTAGTGTTTGGTGTCTCCTTGAAGAACATGAATAAAGCGGAGAGGCTGACTTTTGGTGAG...CTTCACTGCTGTCTCAGAGAAG___GATGATCAGGATGGTGCTTTCACAAAATGGAGAGTGGAGAATTCATGGGGTGAAGACCATGGCCACAAAG|GAAGCGGTACCTCCGGCGGCGGGCAGCTTTGGGACAGCTGAACACCATCCTGCTGGTGGCCCAGCCCCTGCTCCAGAGGCGGCAGAGACTGCAG___CTTGGGCGTTGGCAGGGCTGGCATAGCAGCGAAAGGGCCTTGGAGAGAGTGCC FTAVSEKDDQDGAFTKWRVENSWGEDHGHK|gsgtsgggqlwds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 344 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 66 TRUE 28 BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75611886:+ chr17:73583881-73622929:+ chr17:73607967:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Peptidase_C1-like_family(89%)|FERM_central_domain(100%),MyTH4_domain(100%),Variant_SH3_domain(100%) Peptidase_C1_2(57%)|FERM_M(100%),MyTH4(100%),SH3_2(100%),SH3_9(100%) 1 0 1 651 58 ENST00000261714.11 ENST00000645453.3 upstream upstream mismatches(1) CTTCACTGCTGTCTCAGAGAAG___GATGATCAGGATGGTGCTTTCACAAAATGGAGAGTGGAGAATTCATGGGGTGAAGACCATGGCCACAAAG|GCCATCGGGACGCCCTGGCTGGGAGCATCACCGAGTGCCTGCCGCCTGAGGTTCC...TGACTCTCCCAGCAGACATTGACCTGTTCCCTTTCTCCAGCTTCGTCGCCATCGGCTTTCAG___GAACCGTCCCTGCCCAGGCCAGGGCAGCCACTGGCGAAG FTAVSEKDDQDGAFTKWRVENSWGEDHGHK|gHRDALAGSITECLPPEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 345 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 66 TRUE 28 BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75612798:+ chr17:73583881-73622929:+ chr17:73608879:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Peptidase_C1-like_family(89%)|FERM_central_domain(100%),MyTH4_domain(100%),Variant_SH3_domain(100%) Peptidase_C1_2(57%)|FERM_M(100%),MyTH4(100%),SH3_2(100%),SH3_9(100%) 1 0 0 651 124 ENST00000261714.11 ENST00000645453.3 upstream upstream duplicates(1),mismatches(1) CACTGCTGTCTCAGAGAAG___GATGATCAGGATGGTGCTTTCACAAAATGGAGAGTGGAGAATTCATGGGGTGAAGACCATGGCCACAAAG|GAACCGTCCCTGCCCAGGCCAGGGCAGCCACTGGCGAA...ATGCTGaGGCTCCTGGGGGACGGATCaCTGGAGTCCTGGCAGAGtCAGATCATGGtCaCATACCTGGTGCGGCAGGGGCAGTGCCGGCCAGGGCTGCG TAVSEKDDQDGAFTKWRVENSWGEDHGHK|gtvpaqaraatg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 346 NUMB::HEATR4 ENSG00000133961.21::ENSG00000187105.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 40 FALSE NA FALSE NA NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73409937:- chr14:73741815-73925323:- chr14:73876645:- HEATR4 ENSG00000187105.9 protein_coding - - chr14:73478484-73558947:- chr14:73493124:- chr14:73945189-74025651:- chr14:73959828:- chr14:73409309,chr14:73409313 chr14:73494627,chr14:73494628 NA NA chr14:73876017,chr14:73876021 chr14:73961331,chr14:73961332 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none |Cupin_4(100%) 12 5 4 210 119 ENST00000554546.5 ENST00000553558.6 upstream downstream duplicates(1),multimappers(1) CGAGGTAGAGGCAGTGGCGCTTGAGTTGGTCGGGGGCAGCGGCAG___ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCAGTGCAGCCACTGTTACAATTCAAGATCTTGATCTATATCCATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAA|ATGAGATGGTTCTTCCTAGAAGACCTTCCGAGGTTTGTGACACTGAAGCAGTGATAAAG___CCTGTGAAGCCCCGCGCACCAAATCCCTGGTTACAAAGTTCAGTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary inexact TRUE Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma UTERUS,STOMACH inexact 73876645,73876645|73876645|73876645 TRUE,TRUE|TRUE|TRUE 73945547,73996948|73987743|73989928 FALSE,FALSE|FALSE|FALSE YES,PARTIALLY 5UTR-CDS,5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 347 RAD50::P4HA2 ENSG00000113522.14::ENSG00000072682.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD50 ENSG00000113522.14 protein_coding + + chr5:132556019-132646349:+ chr5:132559367:+ chr5:131891711-131982041:+ chr5:131895059:+ P4HA2 ENSG00000072682.20 protein_coding - + chr5:132190147-132295315:- chr5:132252855:+ chr5:131525840-131631008:- chr5:131588548:+ chr5:132566317,chr5:132566316 chr5:132251521,chr5:132251517 NA NA chr5:131902009,chr5:131902008 chr5:131587214,chr5:131587210 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none AAA_domain(29%)| AAA_15(6%),AAA_21(100%),AAA_23(8%),IL5(100%)| 9 6 5 211 10 ENST00000378823.8 unknown downstream upstream duplicates(1),mismatches(2) CGTGCACGCCTTGCTTCGGCCTCAGTTAAGCCTTTGTGGaCTCCAGGTCCCTGGTGAGATTAGAAACGTTTGCAAACATGTCCCGGATCGAAAAGATGAGCATTCTGGGCGTGCGGAGTTTTGGAATAGAGGACAAAGATAAGCAAATTATCACTTTCTTCAGCCCCCTTACAATTTTGGTTGGACCCAATGGGGCGGGAAAGACG___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG|ACACCAAGAGGCAAGACTAAGGGAAGGCTCCAGCTGTCAGGAGAAACTGGAAACCTGAAGACACCTGGGTTGGGCCTCTATTTATGGACTACAG___GCTCAGGCCCAACAGCATTCCCAAGGGTGTCTGCTCCTGCTGGAGCCTGCCAGCCCTGCCTGCCCATTGAGGAAAGAGCAC MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPK|tprgktkgrlqlsgetgnlktpglglylwttgsgptafprvsapagacqpclpieera NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD50 Double Strand Break Repair Protein 1 Yes breast cancer breast cancer epithelial TSG large_deletion, frameshift, missense, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 348 CHCHD6::TXNRD3 ENSG00000159685.11::ENSG00000197763.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHCHD6 ENSG00000159685.11 protein_coding + + chr3:126704240-126960420:+ chr3:126704399:+ chr3:126423083-126679263:+ chr3:126423242:+ TXNRD3 ENSG00000197763.20 protein_coding - + chr3:126571779-126655124:- chr3:126604628:+ chr3:126290622-126373967:- chr3:126323471:+ chr3:126726719,chr3:126726718 chr3:126591644,chr3:126591640 NA NA chr3:126445562,chr3:126445561 chr3:126310487,chr3:126310483 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none MICOS_complex_subunit_MIC19/MIC25(9%)| none 3 6 11 240 22 ENST00000290913.8 unknown downstream upstream duplicates(1),mismatches(1) GCCCGGTTGCTCTGGAGCCGGGTCTCGGGTCTGGTGGCTGCCGGCCCTGCGGCATCTCGCCATGGGGAGCACGGAGAGCAGCGAGGGCCGCAGGGTGTCCTTCGGAGTGGACGAGGAGGAGCGGGTCCGGGTGCTGCAGGGTGTCCGG|TTTCTAAGGATCAGGAATTTGGAGTAACCAACTGAATGGTTCTGGTTCAAAGTCTCTCAAGAGGTTACTAcCAAGCTGCTGGCCCAGGGATGGCTTGACTGGAGTAGCATTCATTTCCAAGCTCGTTCACACAGACATTGGCAGACCTCAGTTTCTTGCTGACTGTTGGTTGGAGACTTCAGTTCTTCACCATATGGGCCTCTCCATAGGATTCCTGAGCGTCATCAAAACATGATAGCTGCCTTCTCGC MGSTESSEGRRVSFGVDEEERVRVLQGVR|flrirnle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 349 ENSG00000285006::HEATR4 ENSG00000285006.1::ENSG00000187105.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285006 ENSG00000285006.1 lncRNA - - chr14:73366897-73463642:- chr14:73409937:- chr14:73833605-73930348:- chr14:73876645:- HEATR4 ENSG00000187105.9 protein_coding - - chr14:73478484-73558947:- chr14:73493124:- chr14:73945189-74025651:- chr14:73959828:- chr14:73409309,chr14:73409313 chr14:73494627,chr14:73494628 NA NA chr14:73876017,chr14:73876021 chr14:73961331,chr14:73961332 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none |Cupin_4(100%) 12 5 3 210 119 ENST00000556700.5 ENST00000553558.6 upstream downstream duplicates(1),multimappers(1) CGAGGTAGAGGCAGTGGCGCTTGAGTTGGTCGGGGGCAGCGGCAG___ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCAGTGCAGCCACTGTTACAATTCAAGATCTTGATCTATATCCATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAA|ATGAGATGGTTCTTCCTAGAAGACCTTCCGAGGTTTGTGACACTGAAGCAGTGATAAAG___CCTGTGAAGCCCCGCGCACCAAATCCCTGGTTACAAAGTTCAGTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 350 ARHGEF11::ENSG00000286073 ENSG00000132694.19::ENSG00000286073.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 67 TRUE 29 ARHGEF11 ENSG00000132694.19 protein_coding - - chr1:156934840-157045742:- chr1:156971697:- chr1:156904632-157015534:- chr1:156941489:- ENSG00000286073 ENSG00000286073.1 unprocessed_pseudogene - - chr1:157287267-157310655:- chr1:157291982:- chr1:157257057-157280445:- chr1:157261772:- chr1:156970810 chr1:157293045 NA NA chr1:156940602 chr1:157262835 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none PDZ_domain(100%)| PDZ(100%),PDZ_2(100%),PDZ_6(100%)| 4 9 6 41 13 ENST00000368194.8 ENST00000650679.1 upstream downstream low_entropy(1),mismatches(1) GTTCAACGCTGTGTCATTATCCAAAAGGACCAGCATGGCTTCGGCTTCACAGTCAGTGGGGATCGCATTGTTCTGGTGCAGTCTGTGCGGCCTG___GAGGTGC...CTCTGCAG___GATCCCGAAGTTCAAAAACATGCCACCCAGATCCTCAGGAATATGCTGAGGCAGGAAGAAAAAGAATTACAG___CGTATCTGTGAGGTCTATAGCCGGAACCCCGCCAGCCTACTGGAAGAGCAGATCGAAGGTGCCCGGCGGCGAGTCACTCAGTTACAGCTGAAGATCCAGCAGGAGACTGGTGGCTCAGTG|GTGTCTGCAGAACTGCAGCCAACACTTCTGGAGCACATGGCTCTGCAGGGAAGGATTCTGGAGCCCCCATTCATCTGAAGGGCATCCGAGGAGGTTCTATCTTGTTTAATGCGATCGAGAAGCTCAGAGTAGATGTAGGCACCGAGTTGGAGGAGGTTCTATGGGCTTTGGGCACTCTGACAGATCATACACAGTTGCTGCGAGT LQDPEVQKHATQILRNMLRQEEKELQRICEVYSRNPASLLEEQIEGARRRVTQLQLKIQQETGGSV|vsaelqptllehmalqgrileppfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 351 ARHGEF11::ENSG00000286073 ENSG00000132694.19::ENSG00000286073.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 67 TRUE 29 ARHGEF11 ENSG00000132694.19 protein_coding - - chr1:156934840-157045742:- chr1:156976983:- chr1:156904632-157015534:- chr1:156946775:- ENSG00000286073 ENSG00000286073.1 unprocessed_pseudogene - - chr1:157287267-157310655:- chr1:157291982:- chr1:157257057-157280445:- chr1:157261772:- chr1:156970810 chr1:157293045 NA NA chr1:156940602 chr1:157262835 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none PDZ_domain(100%)| PDZ(100%),PDZ_2(100%),PDZ_6(100%)| 0 1 1 85 13 ENST00000368194.8 ENST00000650679.1 upstream downstream none CCTCACCACCACCTCCTCCACCTCTACCACCTCCACAACGCATCACAGGACCCAAACCTCTGCAG___GATCCCGAAGTTCAAAAACATGCCACCCAGATCCTCAGGAATATGCTGAGGCAGGAAGAAAAAGAATTACAG|GTGTCTGCAGAACTGCAGCCAACACTTCTGGAGCACATGGCTC...TGGAGCCCCCATTCATCTGAAGGGCATCCGAGGAGGTTCTATCTTGTTTAATGCGATCGAGAAGCTCAGAGTAGATGTAGGCACCGAGTTGGAGGAGGTTC...ACACAGTTGCTGCGAGTCCGCAGTGGGGCCGACTCTCCAACCTGGTTGAAACTCCAGGACAAGTTCAAGCAGAGGGTCCATGTACCC SPPPPPPLPPPQRITGPKPLQDPEVQKHATQILRNMLRQEEKELQ|vsaelqptllehma NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 352 RBBP8::ENSG00000266850 ENSG00000101773.19::ENSG00000266850.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBBP8 ENSG00000101773.19 protein_coding + + chr18:22798261-23026488:+ chr18:22949713:+ chr18:20378224-20606451:+ chr18:20529676:+ ENSG00000266850 ENSG00000266850.1 lncRNA - + chr18:22723491-22907721:- chr18:22783495:+ chr18:20303454-20487684:- chr18:20363458:+ chr18:22951456,chr18:22951454 chr18:22770698,chr18:22770693 NA NA chr18:20531419,chr18:20531417 chr18:20350661,chr18:20350656 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Tumour-suppressor_protein_CtIP_N-terminal_domain(53%)| CtIP_N(33%)| 4 10 5 145 25 ENST00000327155.10 unknown downstream upstream none CAAG___GTTTACAAGTAAAAGTAACCAAGCTAAAACAGGAACGAATCTT___AGATGCACAAAGACTAGAAGAATTCTTCACCAAAAATCAACAGCTGAGGGAACAGCAGAAAGTCCTTCATGAAACCATTAAAGTTTTAGAAGATCG|TCAGGCCCTTCTTCCGTAAGGCTTCTGCAGTTTGCTGGGGGTCCACTCCAGACCCTATTTGCCTGGGTCCCTCCCTACCTGGAGGTATCACCACTGGAGGCTGCAAAACAGCAAAGATGGCTGCCTGCACCTTCCTCTGGGATCTGTGTCCCGGAAGGGGACTGACCTGATGCCAGCAGAAAAGCTCCTGTATAAG___TTACCGGGTCTGCTTTGGCAGAAGCCATATTTGGAAATCTGGTTCTTCATAATTGCCACAAACCAGCAATACTCATCTTCCATTCATTTAACAAATATTtGTTGAGGACgCTCTGTGATCCAG___AGTCTGCCTGACTGATTGGTCACCGACTGGTCACTTGTGC QGLQVKVTKLKQERILDAQRLEEFFTKNQQLREQQKVLHETIKVLEDr|qallp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4741 chr18:22933349-22933438:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 353 RAB3B::ZFYVE9 ENSG00000169213.7::ENSG00000157077.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB3B ENSG00000169213.7 protein_coding - - chr1:51907956-51990700:- chr1:51937294:- chr1:52373628-52456372:- chr1:52402966:- ZFYVE9 ENSG00000157077.16 protein_coding + - chr1:52142089-52348671:+ chr1:52167913:- chr1:52607761-52814343:+ chr1:52633585:- chr1:51935290,chr1:51935290,chr1:51935304 chr1:52195804,chr1:52195802,chr1:52195815 NA NA chr1:52400962,chr1:52400962,chr1:52400976 chr1:52661476,chr1:52661474,chr1:52661487 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(57%)| Arf(69%),Ras(69%),Roc(91%)| 6 6 7 161 20 ENST00000371655.4 unknown upstream downstream duplicates(1),low_entropy(1),mismatches(1) CGTGGGCATCGACTTCAAGGTGAAGACAGTCTACCGTCACGAGAAGCGGGTGAAACTGCAGATCTGG___GACACAGCTGGGCAGGAGCGGTACCGGACCATCACAACAGCCTATTACCGTGGGGCCATGGGCTTCATTCTGATGTATGACATCACCAATGAAGAGTCCTTCAATGCTGTCCAAGACTG|CTACAGAAACAAAGATTTTTGCTGCAAGCATCTCACAGGATCTGAATGTTCCAAAGATCAACTGTGATTCTGCTGTCTGCACACTGAGAGGTCATTGCTTTGGACCTGGTATCATGAAGGCTCTCTTGAAGTTATCTTCAGTTCATCTGCTTGTTGC VGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDc|yrnkdfcckhltgsecskdql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 354 RBBP8::ENSG00000265943 ENSG00000101773.19::ENSG00000265943.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBBP8 ENSG00000101773.19 protein_coding + + chr18:22798261-23026488:+ chr18:22949713:+ chr18:20378224-20606451:+ chr18:20529676:+ ENSG00000265943 ENSG00000265943.1 lncRNA - + chr18:22699481-22933764:- chr18:22783495:+ chr18:20279444-20513727:- chr18:20363458:+ chr18:22951456,chr18:22951454 chr18:22770698,chr18:22770693 NA NA chr18:20531419,chr18:20531417 chr18:20350661,chr18:20350656 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Tumour-suppressor_protein_CtIP_N-terminal_domain(53%)| CtIP_N(33%)| 4 10 5 145 25 ENST00000327155.10 unknown downstream upstream none CAAG___GTTTACAAGTAAAAGTAACCAAGCTAAAACAGGAACGAATCTT___AGATGCACAAAGACTAGAAGAATTCTTCACCAAAAATCAACAGCTGAGGGAACAGCAGAAAGTCCTTCATGAAACCATTAAAGTTTTAGAAGATCG|TCAGGCCCTTCTTCCGTAAGGCTTCTGCAGTTTGCTGGGGGTCCACTCCAGACCCTATTTGCCTGGGTCCCTCCCTACCTGGAGGTATCACCACTGGAGGCTGCAAAACAGCAAAGATGGCTGCCTGCACCTTCCTCTGGGATCTGTGTCCCGGAAGGGGACTGACCTGATGCCAGCAGAAAAGCTCCTGTATAAG___TTACCGGGTCTGCTTTGGCAGAAGCCATATTTGGAAATCTGGTTCTTCATAATTGCCACAAACCAGCAATACTCATCTTCCATTCATTTAACAAATATTtGTTGAGGACgCTCTGTGATCCAG___AGTCTGCCTGACTGATTGGTCACCGACTGGTCACTTGTGC QGLQVKVTKLKQERILDAQRLEEFFTKNQQLREQQKVLHETIKVLEDr|qallp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4741 chr18:22933349-22933438:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 356 DOCK4::ZNF804B ENSG00000128512.24::ENSG00000182348.7 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111746334:- chr7:111366166-111846462:- chr7:111386390:- ZNF804B ENSG00000182348.7 protein_coding + - chr7:88759700-89338528:+ chr7:89010502:- chr7:88389014-88967842:+ chr7:88639816:- chr7:111745273,chr7:111745289,chr7:111745298 chr7:89043054,chr7:89043064,chr7:89043169 NA NA chr7:111385329,chr7:111385345,chr7:111385354 chr7:88672368,chr7:88672378,chr7:88672483 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none C2_domain_in_Dock180_and_Zizimin_proteins(100%),DHR-2__Lobe_A(92%),DOCK_N-terminus(100%),Variant_SH3_domain(100%)| DHR-2(91%),DOCK-C2(100%),DOCK_N(100%),SH3_2(100%)| 7 2 7 44 16 ENST00000437633.6 unknown upstream downstream duplicates(1),mismatches(1) GGCATCTCTCGCTGGTTTGAAGTGGAAAAGCGTGAAGTG___GTAGAAATGAGTCCTCTGGAAAATGCAATTGAAGTGCTAGAAAATAAGAATCAGCAGCTGAAGACTCTGATTAGTCAGTGTCAGAC...CAGATGCAGAATATTAATCCCCTGACTATGTGCCTGAATGGAGTTATAGATGCTGCAGTTAATGGTGGCGTTTCCAGGTATCAAGAG___GCATTCTTTGTCAAAGAATATATCTTAAGTCACCCTGAAGATGGGGAGAAAATTGCACGATTAAGAGAGCTGATGCTTGAGCAG|GAACCCTCCAAGGAAATTTCATGTTACCTAAATACCAGAAGTAAAAGAGACAGAGAGAAAGAGAGAACCTCTCTACTAAGAATGAGTAACAATCAACTTTAACGG___...GGGTT?CTTTTTTCCCCACTTTATATCATTTTGTTG...___TTCTAGGAAACAATGGCTGA QMQNINPLTMCLNGVIDAAVNGGVSRYQEAFFVKEYILSHPEDGEKIARLRELMLEQ|epskeiscylntrskrdrekertsllrmsnnql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 358 ABCC1::MYH11 ENSG00000103222.20::ENSG00000133392.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16033170:+ chr16:16042995-16237114:+ chr16:16127027:+ MYH11 ENSG00000133392.18 protein_coding - + chr16:15703135-15857028:- chr16:15823133:+ chr16:15796992-15950885:- chr16:15916990:+ chr16:16035699,chr16:16035700 chr16:15822164,chr16:15822162 NA NA chr16:16129556,chr16:16129557 chr16:15916021,chr16:15916019 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 8 5 91 38 ENST00000678422.1 unknown downstream upstream duplicates(1),mismatches(2) CTCACTTTCTGGCTGGTAGCCCTAGTGTGTGCCCTAGCCATCCTGAGATCCAAAATTATGACAGCCTTAAAAGAG___GATGCCCAGGTGGACCTGTTTCGTGACATCACTTTCTACGTCTACTTTTCCCTCTTACTCATTCAGCTCGTCTTGTCCTGTTTCTCAGATCGCTCACCCCTGTTCTCGGAAACCATCCACGACCCT___AATCCCTGCCCAGAGTCCAGCGCTTCCTTCCTGTCGAGGATCACCTTCTGGTGGATCACAGG|CCACAGTAACTCCTGGTCCCTCGCAGTGCCTGCCAAACTCCACATTCCTGGCAAGAACTGCAGACAAGCAGGACAGGAGGGGCTCCCTGGAGCTGGCCCCGTGCAGCCCTGAGTTCACTCACCTTGAAGCATGCTCCGGTAGGCCGTGTCTGCGATGGCGTAGATGTGAGGCGGCATCTCGTGCCTCTTCTTGCCCTTGTACATGTCGACGATCTTCTCCGAGTAGATGGGCAGGTGTTTATAGGGGTTGACC LTFWLVALVCALAILRSKIMTALKEDAQVDLFRDITFYVYFSLLLIQLVLSCFSDRSPLFSETIHDPNPCPESSASFLSRITFWWITg|hsnswslavpaklhipgkncrqagqeglpgagpvqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 362 REV3L::GTF3C6 ENSG00000009413.17::ENSG00000155115.7 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 42 FALSE NA FALSE NA REV3L ENSG00000009413.17 protein_coding - - chr6:111299028-111483715:- chr6:111372596:- chr6:111620231-111804918:- chr6:111693799:- GTF3C6 ENSG00000155115.7 protein_coding + + chr6:110958706-110967890:+ chr6:110962392:+ chr6:111279909-111289093:+ chr6:111283595:+ chr6:111367156,chr6:111367166 chr6:110962142,chr6:110962132 NA NA chr6:111688359,chr6:111688369 chr6:111283345,chr6:111283335 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none DNA_polymerase_family_B__exonuclease_domain(43%),Domain_of_unknown_function_(DUF4683)(100%)|TFIIIC_subunit_triple_barrel_domain(28%) DNA_pol_B_exo1(79%),DUF4683(100%)|TFIIIC_sub6(2%) 6 6 4 247 1633 ENST00000358835.7 ENST00000329970.8 upstream upstream mismatches(1) TAGAACTGTATGTTTCAAGAAACAATGATATGTTGACACCAACTCCTGATAGTTCACCAAGATCTACTAGCTCTCCTTCACAATCTAAAAATGGCAGCTTC...CCTCGAACTGCTAACATTCTGAAACCACTTATGTCCCCCCCAAGTAGGGAAGAAATTATGGCAACTTTGTTGGATCATGACCTGTCTGAGACTATTTACCAGGAACCATTTTGCAGTAATCCTTCTGATGTACCAGAAAAGCCCAG|CTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAGAACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAG___GTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTATCGACCCAACATGATTT PRTANILKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPs|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 363 HEY2::LINC02523 ENSG00000135547.9::ENSG00000224506.3 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HEY2 ENSG00000135547.9 protein_coding + + chr6:125747664-125761269:+ chr6:125754546:+ chr6:126068810-126082415:+ chr6:126075692:+ LINC02523 ENSG00000224506.3 lncRNA + + chr6:125674353-125720218:+ chr6:125717458:+ chr6:125995499-126041364:+ chr6:126038604:+ chr6:125758908,chr6:125758907 chr6:125711909,chr6:125711905 NA NA chr6:126080054,chr6:126080053 chr6:126033055,chr6:126033051 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Helix-loop-helix_DNA-binding_domain(100%)| HLH(100%)| 6 2 8 31 7 ENST00000368364.4 ENST00000423208.2 downstream upstream mismatches(1) TCGGG___GCAAAGTACTAGCTCTGTGATTAGATTGAATTCTCCAACAACAACATCTCAGATTATGGCAAGAAAGAAAAGGAGAGGG___ATTATAGAGAAAAGGCGTCGGGATCGGATAAATAACAGTTTATCTGAGTTGAGAAGACTTGTGCCAACTGCTTTTGAAAAACAA___GGATCTGCAAAGTTAGAAAAAGCTGAAATATTGCAAATGACAGTGGATCATTTGAAGATGCTTCAGGCAACAGGGGGTAAAG|ACTGTCTCATCCTCCTCTGCAAATCCAACAGAAAGGACACAGTAGAGTGGGCAAGAATGCAAAGAAGGTCTGTGGTTTGGAACTGGCCCAAGCCGAACTAAACTTTTCTAAATATACATTAAACTGTCAACAAAGAGCACCGTGACCCACAGCCTGAATAAAGGGAGAGCCCCAAGGCCCTCTGAAGCCACTAGTTCTGTGAGTTGTTTTAGGGAGAAGACAGACAACCAAGAATTATTTACCTTATTAGAC SGQSTSSVIRLNSPTTTSQIMARKKRRGIIEKRRRDRINNSLSELRRLVPTAFEKQGSAKLEKAEILQMTVDHLKMLQATGGK|dclillcksnrkdtvewarmqrrsvvwnwpkpn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 368 CASC3::FBXO47 ENSG00000108349.17::ENSG00000204952.3 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40162901:+ chr17:38296571-38328424:+ chr17:38319154:+ FBXO47 ENSG00000204952.3 protein_coding - + chr17:38936432-38967403:- chr17:38957860:+ chr17:37092685-37123656:- chr17:37114113:+ chr17:40163278,chr17:40163188,chr17:40163188 chr17:38941818,chr17:38941760,chr17:38941757 NA NA chr17:38319531,chr17:38319441,chr17:38319441 chr17:37098071,chr17:37098013,chr17:37098010 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none CASC3/Barentsz_eIF4AIII_binding(100%)| Btz(100%)| 9 4 2 602 34 ENST00000264645.12 unknown downstream upstream duplicates(2),mismappers(7),mismatches(2) GATCGGAAGAATCCAGCATACATACCTCGGAAAGGGCTCTTCTTTGAGCATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAG___ACCCAAGGGGCGTCAGCGAAAGCTATGGAAGGATGAGGGTCGCTGGGAGCATGACAAGTTCCGGGAAGATGAGCAGGCCCCAAAGTCCCGACAGGAGCTCATTGCTCTTTATGGTTATGACATTCGCTCAGCTCATAATCCTGATGACATCAAACCTCGAAGAATCCGGAAACCCCG|AGTCTCGTTCTGTTGCCAGGATGAAGTGCAGTGGCGTGATCTCCGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAAGTGCACACCACCACGCCCAGCTAATTTATGTATTTTTAGTGACGAGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCATGATCCGCCT DRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPr|vsfccqdevqwrdlrslqpppprfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 369 CFTR::CTTNBP2 ENSG00000001626.18::ENSG00000077063.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CFTR ENSG00000001626.18 protein_coding + - chr7:117287120-117715971:+ chr7:117639856:- chr7:116927174-117356025:+ chr7:117279910:- CTTNBP2 ENSG00000077063.11 protein_coding - - chr7:117710651-117874139:- chr7:117735421:- chr7:117350705-117514193:- chr7:117375475:- chr7:117636873,chr7:117636879 chr7:117740857,chr7:117740860 NA NA chr7:117276927,chr7:117276933 chr7:117380911,chr7:117380914 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none none none 4 8 3 8 48 unknown ENST00000160373.8 upstream downstream duplicates(1) GTCTTACTCGCCATTTTAATACTGCAACAGATGGAAGACTCTTGTAATTATTTTTCATTACCTTGTGGTCTCCAGAAATCAAGATGACAAGTCAACTGAAATTTAGATCCACAAG|CTTGTCTGATCCCAGTGAAACAATCTCCCAGTAAGAAGAAAATCATCATCATTTTAGAAAATTTAGAAAAATCTTCACTGTCGGAGTTATTGAGGGACTTTTTGGCACCTCTTGAAAATCGCAGCACTGAAAGCCCCTGCACTTTCCAAAAAG___GAAATGGACTGTCCGAATGTTATTACTTTCATGAGAACTGCTTTCTGATGGGAACCATCGCCAAGGCCTGTCTCCAGGGCTCCGACTTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 370 ENSG00000083622::CTTNBP2 ENSG00000083622.8::ENSG00000077063.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000083622 ENSG00000083622.8 lncRNA - - chr7:117604791-117647415:- chr7:117639856:- chr7:117244845-117287469:- chr7:117279910:- CTTNBP2 ENSG00000077063.11 protein_coding - - chr7:117710651-117874139:- chr7:117735421:- chr7:117350705-117514193:- chr7:117375475:- chr7:117636873,chr7:117636879 chr7:117740857,chr7:117740860 NA NA chr7:117276927,chr7:117276933 chr7:117380911,chr7:117380914 NA NA sense sense unknown intron CDS/splice-site duplication high none none none 4 8 3 8 48 unknown ENST00000160373.8 upstream downstream duplicates(1) GTCTTACTCGCCATTTTAATACTGCAACAGATGGAAGACTCTTGTAATTATTTTTCATTACCTTGTGGTCTCCAGAAATCAAGATGACAAGTCAACTGAAATTTAGATCCACAAG|CTTGTCTGATCCCAGTGAAACAATCTCCCAGTAAGAAGAAAATCATCATCATTTTAGAAAATTTAGAAAAATCTTCACTGTCGGAGTTATTGAGGGACTTTTTGGCACCTCTTGAAAATCGCAGCACTGAAAGCCCCTGCACTTTCCAAAAAG___GAAATGGACTGTCCGAATGTTATTACTTTCATGAGAACTGCTTTCTGATGGGAACCATCGCCAAGGCCTGTCTCCAGGGCTCCGACTTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 371 ITGBL1::ENSG00000263551 ENSG00000198542.15::ENSG00000263551.6 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITGBL1 ENSG00000198542.15 protein_coding + + chr13:101452593-101720856:+ chr13:101598299:+ chr13:102104944-102373206:+ chr13:102250649:+ ENSG00000263551 ENSG00000263551.6 lncRNA + + chr18:976589-1310018:+ chr18:1159179:+ chr18:976590-1310019:+ chr18:1159180:+ chr13:101643589 chr18:1138046 NA NA chr13:102295939 chr18:1138047 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none EGF-like_domain(75%)| EGF_2(86%)| 2 7 5 24 22 ENST00000545560.6 ENST00000670380.1 downstream upstream duplicates(3),low_entropy(1) GGGGACACCTGTGAATGTGATGAGAGGGACTGTAGAGCTGTCTATGACCGATATTCTGATGACTTCTGTTCAG___GTCATGGACAGTGTAATTGCGGAAGATGTGACTGCAAAGCAGGCTGGTATGGGAAGAAGTGTGAGCACCCACAGTCCTGCACGCTGTCAGCTGAGGAGAGCATCAGGAAGTGCCAGGGAAGCTCGGATCTGCCTTGCTCTGGGAGGG|GGAAAACATGCTGCTTCTTCAAAGACTCCAATTTCAGATGGCAAAATGCATGGAAGCTGAGATGGACCTTCTGGAGTTTTCGATAAACCACTGTAGCTCAGTCAGAGGTCCAATTATGATGATACCCACACAGCCCGGTCCTCCCACAGCCTACATCCAATCCTCTGAGGAAGCTGAGTGGCACTGCCTTTATTCACCACAGATGCTACAGAATCAGCAG___GAAGGAAG GDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGR|gktccffkdsnfrwqnawklrwtfwsfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 372 YTHDC2::ENSG00000249746 ENSG00000047188.16::ENSG00000249746.3 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA YTHDC2 ENSG00000047188.16 protein_coding + + chr5:113513694-113595285:+ chr5:113581709:+ chr5:112849391-112930982:+ chr5:112917406:+ ENSG00000249746 ENSG00000249746.3 lncRNA - - chr5:96213263-96215075:- chr5:96214967:- chr5:95548967-95550779:- chr5:95550671:- chr5:113582773,chr5:113582774 chr5:96215266,chr5:96215266 NA NA chr5:112918470,chr5:112918471 chr5:95550970,chr5:95550970 NA NA sense sense out-of-frame CDS/splice-site exon inversion high none DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%),R3H_domain(100%)| DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%),R3H(100%)| 6 2 6 70 7 ENST00000161863.9 ENST00000702547.1 downstream downstream duplicates(1),mismatches(1) AGCTCCATCTAAACCTTGGTCTCAAGTTGATGAAGCTACCATAAGAGCAATTATAGCTGTTTTAAGCACTGAAGAACAGTCTGCAGGTTTACAACAACCATCgGGGATTGGCCAAAGGCCAAGGCCTATGTCTTCAGAAGAGCTTCCTTTGGCCTCATCTTGGAGGTCAAATAATAGTAGGAAAAGTTCAGCAGATACTGAATTTTCTGATGAGTGTACTACTGCAGAAAG|GAATATTTTAGAAGGCTTTACCAAGAATGTGGAATTACACTATGGCTTTAAGAATTTGGCCAGAAAGAGGTCAGAGGAGGACAGAGCAAACTTCAGAAATG APSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKSSADTEFSDECTTAEr|nilegftknvelhygfknlarkrseedranfrn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 378 ENSG00000283782::P4HA2 ENSG00000283782.2::ENSG00000072682.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283782 ENSG00000283782.2 protein_coding + + chr5:132410832-132646079:+ chr5:132559367:+ chr5:131746524-131981771:+ chr5:131895059:+ P4HA2 ENSG00000072682.20 protein_coding - + chr5:132190147-132295315:- chr5:132252855:+ chr5:131525840-131631008:- chr5:131588548:+ chr5:132566317,chr5:132566316 chr5:132251521,chr5:132251517 NA NA chr5:131902009,chr5:131902008 chr5:131587214,chr5:131587210 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none AAA_15(6%),AAA_21(100%),AAA_23(8%),IL5(100%),IRF(100%)| 4 6 3 211 10 ENST00000638452.2 unknown downstream upstream duplicates(1) GCGGAGTTTTGGAATAGAGGACAAAGATAAGCAAATTATCACTTTCTTCAGCCCCCTTACAATTTTGGTTGGACCCAATGGGGCGGGAAAGACG___ACCATCATTGAATGTCTAAAATATATTTGTACTGGAGATTTCCCTCCTGGAACCAAAGGAAATACATTTGTACACGATCCCAAG|ACACCAAGAGGCAAGACTAAGGGAAGGCTCCAGCTGTCAGGAGAAACTGGAAACCTGAAGACACCTGGGTTGGGCCTCTATTTATGGACTACAG___GCTCAGGCCCAACAGCATTCCCAAGGGTGTCTGCTCCTGCTGGAGCCTGCCAGCCCTGCCTGCCCATTGAGGAAAGAGCACAGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 379 MPP7::PARD3 ENSG00000150054.19::ENSG00000148498.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 44 FALSE NA FALSE NA MPP7 ENSG00000150054.19 protein_coding - - chr10:28050993-28334486:- chr10:28302861:- chr10:28339922-28623415:- chr10:28591790:- PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34131583:- chr10:34398488-35104253:- chr10:34420511:- chr10:28276374,chr10:28276376 chr10:34168391,chr10:34168390 NA NA chr10:28565303,chr10:28565305 chr10:34457319,chr10:34457318 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 2 8 3 28 108 ENST00000683449.1 ENST00000545260.5 upstream downstream duplicates(1) GCCGAGCCCGCTGGCTCCCGATTGTCCTCTGCGGCGGTGGCGGTCGCTGCCTCCTTGCCTCCGGGCCCGGGGCTGCAGGGGCCAGAGCGAGTGCGCCTCCTGCCCGCGGACCGCGGCAGCCCAGAGCAG|TAACAGATCAACTCCTAGCAATCATGATCGGATACAGCGTCTGAGGCAAGAATTTCAGCAAGCAAAGCAAGATGAAGATGTAGAAGATCGTCGGCGGACCTATAGTTTTGAGCAACCCTGG___CCGAACGCACGGCCGGCGACGCAGAGCGGGCGgCACTCGGTGTCCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 380 SLC22A17::MYH7 ENSG00000092096.19::ENSG00000092054.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 45 TRUE 71 TRUE 30 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23348506:- chr14:23815523-23822121:- chr14:23817715:- MYH7 ENSG00000092054.13 protein_coding - - chr14:23412740-23435660:- chr14:23434249:- chr14:23881949-23904869:- chr14:23903458:- chr14:23348495,chr14:23348497 chr14:23435545,chr14:23435544 NA NA chr14:23817704,chr14:23817706 chr14:23904754,chr14:23904753 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site duplication high none Sugar_(and_other)_transporter(31%)|Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(100%) Sugar_tr(65%)|IQ(100%),Myosin_N(100%),Myosin_head(100%),Myosin_tail_1(100%) 2 2 9 383 19 ENST00000474057.6 ENST00000355349.4 upstream downstream duplicates(3),mismatches(1) CTGACCTTGGGGCTGGTGGGCCCCTGTGGAGTAGGAGGGGCTGCTGCAGGCTCCTCCACAGGCGTCATGGCCCTCCGATTCCTCTTGGGCTTTCTGCTTGCCGGTGTTGACCTGGGTGTCTACCTGATGC___...CCTGGCCCTTGTCTCTAAGGATTGGCGATTCCTACAGCGAATGATCACCGCTCCCTGCATCCTCTTCCTGTTTTATGG|GTCCCCTGCAGGCCTTGGCCCCTTTCCTCATCTGTAGACACACTTGAGTAGCCCAG___GCACAGCCATGGGAGATTCGGAGATGGCAGTCTTTGGGGCTGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTAGAAGCGCAGACCAGGCCTTTTGACCTCAAGAAGGATGTCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-208b chr14:23417987-23418063:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 381 SLC22A17::MYH7 ENSG00000092096.19::ENSG00000092054.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 46 TRUE 71 TRUE 30 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23349272:- chr14:23815523-23822121:- chr14:23818481:- MYH7 ENSG00000092054.13 protein_coding - - chr14:23412740-23435660:- chr14:23434249:- chr14:23881949-23904869:- chr14:23903458:- chr14:23348495,chr14:23348497 chr14:23435545,chr14:23435544 NA NA chr14:23817704,chr14:23817706 chr14:23904754,chr14:23904753 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site duplication high none Sugar_(and_other)_transporter(17%)|Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(100%) Sugar_tr(50%)|IQ(100%),Myosin_N(100%),Myosin_head(100%),Myosin_tail_1(100%) 3 1 7 346 19 ENST00000474057.6 ENST00000355349.4 upstream downstream mismatches(2) CAACGCCATCGGCCAG___ATTTGGCCGTCGCGGGATTGTGCTGCTGACCTTGGGGCTGGTGGGCCCCTGTGGAGTAGGAGGGGCTGCTGCAGGCTCCTCCACAGGCGTCATGGCCCTCCGATTCCTCTTGGGCTTTCTGCTTGCCGGTGTTGACCTGGGTGTCTACCTGATGC|GTCCCCTGCAGGCCTTGGCCCCTTTCCTCATCTGTAGACACACTTGAGTAGCCCAG___GCACAGCCATGGGAGATTCGGAGATGGCAGTCTTTGGGGCTGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTAGAAGCGCA...AGCGAGGCCCCGCCCCACATCTTCTCCATCTCCGACAACGCCTATCAGTACATGCTGACAG___ACAGAGAAAACCAGTCCATCCTGATCAC___CGGAGAATCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-208b chr14:23417987-23418063:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 382 SLC22A17::MYH7 ENSG00000092096.19::ENSG00000092054.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 71 TRUE 30 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23349272:- chr14:23815523-23822121:- chr14:23818481:- MYH7 ENSG00000092054.13 protein_coding - - chr14:23412740-23435660:- chr14:23433740:- chr14:23881949-23904869:- chr14:23902949:- chr14:23348495,chr14:23348497 chr14:23435545,chr14:23435544 NA NA chr14:23817704,chr14:23817706 chr14:23904754,chr14:23904753 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site duplication high none Sugar_(and_other)_transporter(17%)|Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(100%) Sugar_tr(50%)|IQ(100%),Myosin_N(100%),Myosin_head(100%),Myosin_tail_1(100%) 2 0 5 346 21 ENST00000474057.6 ENST00000355349.4 upstream downstream none CGCCGGACTTCAACCATTGCCTCAAGGATTGGGACTATAATGGCCTTCCTGTGCTCACCACCAACGCCATCGGCCAG___ATTTGGCCGTCGCGGGATTGTGCTGCTGACCTTGGGGCTGGTGGGCCCCTGTGGAGTAGGAGGGGCTGCTGCAGGCTCCTCCACAGGCGTCATGGCCCTCCGATTCCTCTTGGGCTTTCTGCTTGCCGGTGTTGACCTGGGTGTCTACCTGATGC|GCACAGCCATGGGAGATTCGGAGATGGCAGTCTTTGGGGCTGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTAGAAGCGCAGACCAGGCCTTTTGACCTCAAGAAGGATGTCTTCGTGCCTGATGACAAACAGGAGTTTGTCAAGGCCAAG...AGAGGGTGGCAAAGTCACTGCCGAGACCGAGTATGGCAAG___ACAGTGACCGTGAAGGAGGACCAGGTGATGCAGCAGAACCCACCCAAGTTCGACAAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-208b chr14:23417987-23418063:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 383 ESCO1::DPP10 ENSG00000141446.11::ENSG00000175497.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ESCO1 ENSG00000141446.11 protein_coding - - chr18:21529284-21600884:- chr18:21600623:- chr18:19109245-19180845:- chr18:19180584:- DPP10 ENSG00000175497.17 protein_coding + - chr2:114442299-115845780:+ chr2:114855946:- chr2:115199876-116603356:+ chr2:115613523:- chr18:21599238,chr18:21599244 chr2:114966197,chr2:114966200 NA NA chr18:19179199,chr18:19179205 chr2:115723774,chr2:115723777 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 3 7 2 33 19 ENST00000383276.1 unknown upstream downstream duplicates(1) CGGCCGCAGCAGAAGCAGCTGAGTGTCTCCTGATACCCGGATGTGAGGCGATCCGCTGGCGCTAGTCTGACCCTCCGCCAGGCAAAAGGAAG|CCTGAGGGATGCCTGAAGATGGGATCTTTGGTCAAATGCTCCTTGCAACACAAATACTCAAGAAATTGGCTAGAGCATATTTATTTCAGATCCAAGATAGCAGGGCACCCCACTGAGGACAATGTTTGAAGATAAGCCATTAAGCAACTAGAAAT...CCCCGCAAAGCCCTACATTGCTTAGCTTTATGGGATTTTAAAATTGTCTCTTGTAAATTATTTCTATAGTCTAAGTTGCTGATCTTTTGGTAGCAGATCAG...CTCAGCTTTGTTCACCAAATGTGAACTAGATGATAGGAACAACTTAGGCTGTATGTGAAGAACGCACACACACATTTAATGTTGTCATACAGAGAAGGAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 384 SMG1::ENSG00000259925 ENSG00000157106.18::ENSG00000259925.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 72 TRUE 31 SMG1 ENSG00000157106.18 protein_coding - - chr16:18804860-18926408:- chr16:18925950:- chr16:18816182-18937730:- chr16:18937272:- ENSG00000259925 ENSG00000259925.1 lncRNA - - chr16:19343647-19401693:- chr16:19396249:- chr16:19354969-19413015:- chr16:19407571:- chr16:18909834,chr16:18909837 chr16:19399401,chr16:19399401 NA NA chr16:18921156,chr16:18921159 chr16:19410723,chr16:19410723 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 4 7 92 28 ENST00000446231.7 ENST00000563613.1 upstream downstream inconsistently_clipped(1),mismatches(1) GCCGGTTCGGGCGGCGACTCGCGCTTCTTTGGGCGGCGGCGCTTGGCCATGTCGTGTCGGGGAAGGTAATGAGCCGCAGAGCCCCGGGGTCTCGGCTGAGCAGCGGCGGCGGCGGCGGCGGCACCAAGTATCCGCGGAGCTGGAATGACTGGCAACCCAG|AAGAGAATCAGCTTCCTGTCTGGGTGCCCACAAGACATCTTAAGCTGTGCCATGAGCCAGAATCCAAGGAAGAGGAAAAGACCTCGGAACATCCCTGCACCCCCAGTTCATCAGATGGCTCAGATGAACATCTCTGTTGAGCAGATGGAAACCAGTAAAACTCG...CAACTCCACTGACCTGGGGGCAGGTGAAGAGCCTAGCTCACATTGCAGAAGAGAACCTGAGGTCTCTGAACAAGCTGCTGACCACCAGTAATCTAATG MSRRAPGSRLSSGGGGGGTKYPRSWNDWQPr|resasclgahkts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase SMG1 Atypical PIKK SMG1 Q96Q15 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 385 SMG1::ENSG00000259925 ENSG00000157106.18::ENSG00000259925.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 72 TRUE 31 SMG1 ENSG00000157106.18 protein_coding - - chr16:18804860-18926408:- chr16:18925679:- chr16:18816182-18937730:- chr16:18937001:- ENSG00000259925 ENSG00000259925.1 lncRNA - - chr16:19343647-19401693:- chr16:19396249:- chr16:19354969-19413015:- chr16:19407571:- chr16:18909834,chr16:18909837 chr16:19399401,chr16:19399401 NA NA chr16:18921156,chr16:18921159 chr16:19410723,chr16:19410723 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 1 7 0 28 ENST00000569122.1 ENST00000563613.1 upstream downstream none CCGGGGCTCCCGGCGGTGGCACTGGCCTGGGGTCGGGACCAGGAG|AAGAGAATCAGCTTCCTGTCTGGGTGCCCACAAGACATCTTAAGCTGTGCCATGAGCCAGAATCCAAGGAAGAGGAAAAGACCTCGGAACATCCCTGCACCCCCAGTTCATCAGATGGCTCAGATGAACATCTCTGTTGAGCAGATGGAAACCAGTAAAACTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase SMG1 Atypical PIKK SMG1 Q96Q15 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 386 SMG1::ENSG00000259925 ENSG00000157106.18::ENSG00000259925.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 72 TRUE 31 SMG1 ENSG00000157106.18 protein_coding - - chr16:18804860-18926408:- chr16:18925950:- chr16:18816182-18937730:- chr16:18937272:- ENSG00000259925 ENSG00000259925.1 lncRNA - - chr16:19343647-19401693:- chr16:19367877:- chr16:19354969-19413015:- chr16:19379199:- chr16:18909834,chr16:18909837 chr16:19399401,chr16:19399401 NA NA chr16:18921156,chr16:18921159 chr16:19410723,chr16:19410723 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 0 2 92 2 ENST00000446231.7 ENST00000563613.1 upstream downstream none GCCGCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGGCTTCCTCCTCAGCCCCGGGCCGGAGCGGGGTGTCGGCGGCGGCCGGTTCGGGCGGCGACTCGCGCTTCTTTGGGCGGCGGCGCTTtGCCATGTCGTGTCGGGGAAGGTAATGAGCCGCAGAGCCCCGGGGTCTCGGCTGAGCAGCGGCGGCGGCGGCGGCGGCACCAAGTATCCGCGGAGCTGGAATGACTGGCAACCCAG|ATGGTGCACAAGAAGGCTCTCGCCAGATGCTGGTCTTGTGATCTTGGACTTCCCAGCtTCCAG MSRRAPGSRLSSGGGGGGTKYPRSWNDWQPr|wctrrlspdaglvildfpas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase SMG1 Atypical PIKK SMG1 Q96Q15 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 387 SMG1::ENSG00000259925 ENSG00000157106.18::ENSG00000259925.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 72 TRUE 31 SMG1 ENSG00000157106.18 protein_coding - - chr16:18804860-18926408:- chr16:18925950:- chr16:18816182-18937730:- chr16:18937272:- ENSG00000259925 ENSG00000259925.1 lncRNA - - chr16:19343647-19401693:- chr16:19354801:- chr16:19354969-19413015:- chr16:19366123:- chr16:18909834,chr16:18909837 chr16:19399401,chr16:19399401 NA NA chr16:18921156,chr16:18921159 chr16:19410723,chr16:19410723 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 0 2 92 8 ENST00000446231.7 ENST00000567369.1 upstream downstream none GCCGCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCGGCTTCCTCCTCAGCCCCGGGCCGGAGCGGGGTGTCGGCGGCGGCCGGTTCGGGCGGCGACTCGCGCTTCTTTGGGCGGCGGCGCTTGGCCATGTCGTGTCGGGGAAGGTAATGAGCCGCAGAGCCCCGGGGTCTCGGCTGAGCAGCGGCGGCGGCGGCGGCGGCACCAAGTATCCGCGGAGCTGGAATGACTGGCAACCCAG|GTTCTACTTGAATCATAGTTTCTTTGCTCCTGGaAGACCCCTGCTATTCCCAGTGATGCTGCGAACTGGGGTTCAAAGTGGGGTGGCCTGGTGAGGCCTAAAATCCATGTCCCGTGGAGAACTGCCTGCATCCCTT MSRRAPGSRLSSGGGGGGTKYPRSWNDWQPr|fylnhsffapgrpllfpvmlrtgvqsgvaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase SMG1 Atypical PIKK SMG1 Q96Q15 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 388 RNF111::TAPT1-AS1 ENSG00000157450.16::ENSG00000263327.6 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59081284:+ chr15:59157374-59389618:+ chr15:59373483:+ TAPT1-AS1 ENSG00000263327.6 lncRNA + - chr4:16226685-16320140:+ chr4:16258160:- chr4:16228308-16321763:+ chr4:16259783:- chr15:59082951,chr15:59082952 chr4:16266872,chr4:16266871 NA NA chr15:59375150,chr15:59375151 chr4:16268495,chr4:16268494 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none E3_ubiquitin-protein_ligase_Arkadia_N-terminus(100%)| RNF111_N(100%),RRM_1(100%),RRM_5(100%),SAP(100%)| 8 2 2 106 16 ENST00000348370.9 unknown downstream downstream mismappers(1) CTCCGCCTCAAGTGGATTATGTTATTCCTCATCCTGTACATGCTTTCCATTCTCAAATATCTTCTCATGCAACATCTCATCCTGTGGCACCCCCACCACCAACTCACTTAGCCAGTACAGCTGCACCAATCCCTCAGCATCTTCCTCCTACACACCAGCCAATTTCGCACCATATTCCAGCCACAGCACCTCCAGCACAGAGACTGCATCCTCATGAAGTGATGCAGAGGATGGAAGTTCAAAGGAGGAGGATGATGCAGCATCCAAC|GTATTTGCTGAGCACCTCCATATGCCAGGCAATTTGCTAGATTGTGGCACTACAGTGATGAACATGAAGGTAAGTGAGGC...GGGAGGA?GAAAC...___GCTAGAGAAAGGCACCAG PPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPIPQHLPPTHQPISHHIPATAPPAQRLHPHEVMQRMEVQRRRMMQHPt|yllstsicqaic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 389 CLSTN1::PLCB1 ENSG00000171603.18::ENSG00000182621.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLSTN1 ENSG00000171603.18 protein_coding - - chr1:9728926-9823984:- chr1:9773272:- chr1:9788984-9884042:- chr1:9833330:- PLCB1 ENSG00000182621.19 protein_coding + - chr20:8077251-8968360:+ chr20:8177382:- chr20:8057898-8949007:+ chr20:8158029:- chr1:9767109,chr1:9767114 chr20:8180628,chr20:8180630 NA NA chr1:9827167,chr1:9827172 chr20:8161275,chr20:8161277 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 7 4 212 6 ENST00000377298.9 unknown upstream downstream mismatches(1) CAAGCCCTGGCTGGAGCCCACCTACCACGGCATAGTCACAGAGAACGACAACACCGTGCTCCTCGACCCCCCACTGATCGCGCTGGATAAAGATGCGCCTCTGCGATTTGCAG|AAATGTATTCCTCACTGTTCTGGCGGCTGAGAAGTCCAAGATCAAGATGCTGGCAGATTCAGCGTCTGGTGATTGCCCATTTCTCACAGAAGGTGCCTTCTATGAATGCTCATGTGGTGG KPWLEPTYHGIVTENDNTVLLDPPLIALDKDAPLRFA|emysslfwrlrsprsrcwqiqrlviahfsqkvpsmnahvv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 391 SLX4::ADCY9 ENSG00000188827.12::ENSG00000162104.10 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3606474:- chr16:3631182-3661607:- chr16:3656475:- ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:3993510:- chr16:4003388-4166443:- chr16:4043511:- chr16:3605416,chr16:3605418 chr16:4005220,chr16:4005219 NA NA chr16:3655417,chr16:3655419 chr16:4055221,chr16:4055220 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(50%) |Guanylate_cyc(0%),zf-C2HC_2(0%) 3 3 5 49 52 ENST00000294008.4 ENST00000571467.1 upstream downstream none GAtTCCCAGCCTCCTCCTTCCTGTTTGACAACAGCAGTGCCAAGTCCCTCCAAACCCtGCACAGCACAATTGGTCCTACAGCGAATGCAGCAGTTCAAGAGAGCAGACCCCGAGCGTTTGAGACACGCTTCAGAAGAGTGCTCCCTCGAGGCTGCGCGGGAAGAAAATGTCCCAAAGGATCCTCAAGAGGAGATGATGGCGGGGAATG|ACCTGCCCTTCGTGCGGAATCACATTTGCTCCCAAATCTGAAGCCGGCGCCGAGGGAGGAGCACCTCAAAACGGCTGCCAAGACGAGCATAAAAACAGCACCAAG___...GCTGTTGTTCCTGTCAGTTCCTCTCCTGGCGCATCCACCCAAGGTGACATTCCTGTCTTGTCGACTTCTTAGTTCTGAGAGTAACTCCTCTTGG...___GCTTCTGGAGGACCTAATCCCAAAACTCAGAACGGGCTCCTCAGCCCTCCCCAAGAGGAGAAGCTCACCAACAGTCAGACTTCTCTGTGTGAGATCTTGCAGGAGAAGGGAAGGTGGGCAGGGGTGAGCCTGGACCAGTCGGCTCTCCTTCCGCTGAGGTTCAAGAACATCCGGGAGAAAACGGACGCCCACTTTGTGGACGTTATCAAAG DSQPPPSCLTTAVPSPSKPcTAQLVLQRMQQFKRADPERLRHASEECSLEAAREENVPKDPQEEMMAGN|dlpfvrnhicsqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 393 ENSG00000259420::HMG20A ENSG00000259420.5::ENSG00000140382.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 47 FALSE NA FALSE NA ENSG00000259420 ENSG00000259420.5 lncRNA + + chr15:77568970-77608888:+ chr15:77569176:+ chr15:77861312-77901230:+ chr15:77861518:+ HMG20A ENSG00000140382.15 protein_coding + + chr15:77420412-77485607:+ chr15:77471783:+ chr15:77712754-77777949:+ chr15:77764125:+ chr15:77572321,chr15:77572322 chr15:77471047,chr15:77471045 NA NA chr15:77864663,chr15:77864664 chr15:77763389,chr15:77763387 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 3 7 1 10 147 ENST00000561123.2 ENST00000381714.7 downstream upstream none CCCCAGAAGCAGTTTAAAATTTTTTTATTATTTTGAAAAGGGATTACATTCACATGTTTCAAAATCCAAACAAGATAACACAGCATAGAGAAAGAAGCCTTT...CTTTTCGTTTCCTGTGTGTCCTTTCAGAGCTCCTTTTGCTTTCAAAAGCAAATACAAATACGGGCAGCTTCTGAATGGATGGCCAAGTGACTCTGGAGCTTCCGCGCTGTGTGAGGGCTGGGCTTTCTGTCCCTGTTCACCCTCGAACCCAGGCTTCAGCCACCGCACG|ATGCAGCCCGGCAGGCCACTCATGATCATGAG___AAAGAAACAGAGGTAAAGGAACGGTCTGTTTTTGACATCCCTATATTTACAGAGGAATTCTTGAACCATAGCAAAG___CTCGGGAAGCAGAGCTCCGCCAGCTTCGCAAATCCAACATGGAGTTTGAGGAGAGGAATGCAGCCCTGCAAAAGCACGTGGAGAGCATGCGCACAGCAGTGGAGAAGCTGGAGGTGGATGTGATCCAGGAGCGGAGCCGCAACACAGTCTTACAGCAGCACCTGGAGACCCTGCGGCAGGTGCTGACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 394 NUTM2B-AS1::RAPGEF4 ENSG00000225484.7::ENSG00000091428.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 48 TRUE 73 TRUE 32 NUTM2B-AS1 ENSG00000225484.7 lncRNA - - chr10:79661394-79826594:- chr10:79808759:- chr10:81421150-81586350:- chr10:81568515:- RAPGEF4 ENSG00000091428.18 protein_coding + + chr2:172735274-173052893:+ chr2:172795025:+ chr2:173600002-173917621:+ chr2:173659753:+ chr10:79807563,chr10:79807569 chr2:172791484,chr2:172791478 NA NA chr10:81567319,chr10:81567325 chr2:173656212,chr2:173656206 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Cyclic_nucleotide-binding_domain(100%),Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%),RasGEF_N-terminal_motif(100%),RasGEF_domain(100%) |DEP(100%),RasGEF(100%),RasGEF_N(100%),cNMP_binding(100%) 3 2 5 185 35 ENST00000601369.6 ENST00000397081.8 upstream upstream mismatches(3) GAAAACTTCAGAGACCTAAACTTTTTCCAGAGAAGAGAAGCTTTACTGGTGTTCCAGCCCTAAG___AAACCTTTGTTCAAGAAAACGGCAGATGCTCTGTTGAATCCACTGGAGATTGTcCTGATACTAAGGACAAGTAT|ACCACTGGAGCGATCCAGCGAAGATGTGGATATAATCTTCACTCGACTGAAAGAAGTTAAAGCTTTTGAGAAATTTCACCCAAATCTCCTTCATCAGATTTGCTTATGTGGTTATTATGAGAATCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 395 NUTM2B-AS1::RAPGEF4 ENSG00000225484.7::ENSG00000091428.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 73 TRUE 32 NUTM2B-AS1 ENSG00000225484.7 lncRNA - - chr10:79661394-79826594:- chr10:79814613:- chr10:81421150-81586350:- chr10:81574369:- RAPGEF4 ENSG00000091428.18 protein_coding + + chr2:172735274-173052893:+ chr2:172795025:+ chr2:173600002-173917621:+ chr2:173659753:+ chr10:79807563,chr10:79807569 chr2:172791484,chr2:172791478 NA NA chr10:81567319,chr10:81567325 chr2:173656212,chr2:173656206 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Cyclic_nucleotide-binding_domain(100%),Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%),RasGEF_N-terminal_motif(100%),RasGEF_domain(100%) |DEP(100%),RasGEF(100%),RasGEF_N(100%),cNMP_binding(100%) 0 1 2 169 35 ENST00000601369.6 ENST00000397081.8 upstream upstream mismatches(1) CGCATGGCTCCATGAAGCAAGAGGAGGAGGCAGAGCGCGAGAGGTCCCGTCCGCCCCAGCCGCGTCTGGGCCAGGATAAAAG___CAAAACCATATTCCTGCTGCTGTCAGTTATGATGtACTGAGAAAACTTCAGAGACCTAAACT...AAGAGAAGCTTTACTGGTGTTCCAGCCCTAAG|ACCACTGGAGCGATCCAGCGAAGATGTGGATATAATCTTCACTCGACTGAAAGAAGTTAAAGCTTTTGAGAAATTTCACCCAAATCTCCTTCATCAGATTTGCTTATGTGGTTATTATGAGAATCTGGAAAAGGGAATAACAT___TATTTCGCCAGGGTGATATTGGAACAAACTGGTATGCTGTCCTGGCAGGGTCTTTGGATGTTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 396 PPM1L::B3GALNT1 ENSG00000163590.14::ENSG00000169255.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPM1L ENSG00000163590.14 protein_coding + - chr3:160755602-161078902:+ chr3:161076624:- chr3:160473390-160796690:+ chr3:160794412:- B3GALNT1 ENSG00000169255.15 protein_coding - - chr3:161083883-161105411:- chr3:161086788:- chr3:160801671-160823199:- chr3:160804576:- chr3:161076599,chr3:161076603 chr3:161096099,chr3:161096100 NA NA chr3:160794387,chr3:160794391 chr3:160813887,chr3:160813888 NA NA antisense sense unknown 3'UTR 5'UTR/splice-site duplication/3'-3' high none |Galactosyltransferase(100%) |Fringe(100%),Galactosyl_T(100%) 3 6 1 23 403 unknown ENST00000392779.6 upstream downstream duplicates(1) GTGCACTGCCATATACTCTGAGCTCTACTACAG___...TGAGAATGCTGAGACATTATCAAATAGATTTCAATTCTGTGACCTGAACTGCAGTTGT|AACCTTCGGCTCGCGTGCTTCTGAGCTGCTGTGGATGGCCTCGGCTCTCTGGACTGTCCTTCCGAGTAGGATGTCACTGAGATCCCTCAAATGGAGCCTCCTGCTGCTGTCACTCCTGAGTTTCTTTGTGATGTGGTACCTCAGCCTTCCCCACTACAATGTGATAGAACGCGTGAACTGGATGTACTTCTATGAGTATGAGCCGATTTACAGACAAGACTTTCACTTCACACTTCGAGAGCATTCAAACTGCTCTCATCAAAATCCATTTCTGGTCATTCTGGTGACCTCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 397 PIK3R3::MKNK1 ENSG00000117461.15::ENSG00000079277.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 74 TRUE 33 PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46080642:- chr1:46505812-46598708:- chr1:46546314:- MKNK1 ENSG00000079277.22 protein_coding - - chr1:46557407-46616843:- chr1:46584803:- chr1:47023079-47082515:- chr1:47050475:- chr1:46080223,chr1:46080226 chr1:46585159,chr1:46585159 NA NA chr1:46545895,chr1:46545898 chr1:47050831,chr1:47050831 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none SH2_domain(5%)|Protein_kinase_domain(100%) SH2(0%)|Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 4 3 3 174 39 ENST00000420542.5 ENST00000525888.5 upstream downstream duplicates(1) TGGAGaATGGACCGCGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG___CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG|ATCCCCAAAATGGATGGAAGAATGCGCCTAAATTGAGCTGTCAGGCACTTGGCTGCGTAACCATGCTTTCTGGATTGTGGTGTTGAAAGTGCCATCCTGTGTGCTCTCTCCGGATGGCTGTCACGTACTTGCGTCTGAGAACAGTGTATGGACCTGCAcGAG...CACAGTCGGAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAA___GAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAG WrMDRDDADWREVMMPYSTELIFYIEMDPPALPPKPPKPMTSAVPNGMKDSSVSLQDAEWYWGDISr|spkwmeeca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-interacting serine/threonine-protein kinase 1 CAMK MAPKAPK MNK Q9BUB5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 398 PIK3R3::MKNK1 ENSG00000117461.15::ENSG00000079277.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 74 TRUE 33 PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46080642:- chr1:46505812-46598708:- chr1:46546314:- MKNK1 ENSG00000079277.22 protein_coding - - chr1:46557407-46616843:- chr1:46583329:- chr1:47023079-47082515:- chr1:47049001:- chr1:46080223,chr1:46080226 chr1:46585159,chr1:46585159 NA NA chr1:46545895,chr1:46545898 chr1:47050831,chr1:47050831 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SH2_domain(5%)|Protein_kinase_domain(100%) SH2(0%)|Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 3 1 3 174 208 ENST00000420542.5 ENST00000649800.1 upstream downstream none CCGCGATGACGCAGACTGGAGGGAGGgGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG___CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG|AGATGGGCAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGGAAAGTTTGAAG___ATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCGTGAGC...GTGGAGACGCTGTATCAGTGTCAGGGAAACAA___GAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAGGTTTTACTTGGTCTTcGAGAAATTGCA RDDADWREgMMPYSTELIFYIEMDPPALPPKPPKPMTSAVPNGMKDSSVSLQDAEWYWGDISr|dgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-interacting serine/threonine-protein kinase 1 CAMK MAPKAPK MNK Q9BUB5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 399 CHST3::AGPAT3 ENSG00000122863.6::ENSG00000160216.21 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 49 FALSE NA FALSE NA CHST3 ENSG00000122863.6 protein_coding + + chr10:71964395-72013558:+ chr10:71964694:+ chr10:73724153-73773316:+ chr10:73724452:+ AGPAT3 ENSG00000160216.21 protein_coding + + chr21:43865223-43987592:+ chr21:43978046:+ chr21:45285104-45407473:+ chr21:45397927:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Acyltransferase_C-terminus(81%) |Acyltransf_C(31%) 5 0 4 16 166 ENST00000373115.5 ENST00000291572.13 downstream upstream low_entropy(1) GCACAGCTCGGGCCGCGCGGGCGCCGGGGCCGCGGAACCGCTTCTGCCGGGATCTTCCAGGAGGAAAGCGAAGTTGCGAGCGGATGCTGCCCGCGCCGGACCCCAGCCGCGGAGGGTCGGGGCCGCCGGTGGAGTCTCGGCGGCCGGG|GAGATTTCCTCTGGAAGACATCCCGCTGGATGAAAAGGAAGCAGCTCAGTGGCTTCATAAACTGTACCAGGAGAAG___GACGCGCTCCAGGAGATATATAATCAGAAGGGCATGTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 401 P3R3URF-PIK3R3::MKNK1 ENSG00000278139.1::ENSG00000079277.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 75 TRUE 34 P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46080642:- chr1:46509333-46642160:- chr1:46546314:- MKNK1 ENSG00000079277.22 protein_coding - - chr1:46557407-46616843:- chr1:46584803:- chr1:47023079-47082515:- chr1:47050475:- chr1:46080223,chr1:46080226 chr1:46585159,chr1:46585159 NA NA chr1:46545895,chr1:46545898 chr1:47050831,chr1:47050831 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none SH2_domain(5%)|Protein_kinase_domain(100%) SH2(0%)|Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 4 3 2 174 39 ENST00000540385.2 ENST00000525888.5 upstream downstream duplicates(1) TGGAGaATGGACCGCGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG___CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG|ATCCCCAAAATGGATGGAAGAATGCGCCTAAATTGAGCTGTCAGGCACTTGGCTGCGTAACCATGCTTTCTGGATTGTGGTGTTGAAAGTGCCATCCTGTGTGCTCTCTCCGGATGGCTGTCACGTACTTGCGTCTGAGAACAGTGTATGGACCTGCAcGAG...CACAGTCGGAGTAGGGTGTTTCGAGAGGTGGAGACGCTGTATCAGTGTCAGGGAAACAA___GAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAG wrmdrddadwrevmmpystelifyiemdppALPPKPPKPMTSAVPNGMKDSSVSLQDAEWYWGDISr|spkwmeeca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-interacting serine/threonine-protein kinase 1 CAMK MAPKAPK MNK Q9BUB5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 402 P3R3URF-PIK3R3::MKNK1 ENSG00000278139.1::ENSG00000079277.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 75 TRUE 34 P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46080642:- chr1:46509333-46642160:- chr1:46546314:- MKNK1 ENSG00000079277.22 protein_coding - - chr1:46557407-46616843:- chr1:46583329:- chr1:47023079-47082515:- chr1:47049001:- chr1:46080223,chr1:46080226 chr1:46585159,chr1:46585159 NA NA chr1:46545895,chr1:46545898 chr1:47050831,chr1:47050831 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SH2_domain(5%)|Protein_kinase_domain(100%) SH2(0%)|Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 3 1 2 174 208 ENST00000540385.2 ENST00000649800.1 upstream downstream none CCGCGATGACGCAGACTGGAGGGAGGgGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG___CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG|AGATGGGCAGTAGCGAACCCCTTCCCATCGCAGATGGTGACAGGAGGAGGAAGAAGAAGCGGAGGGGCCGGGCCACTGACTCCTTGCCAGGAAAGTTTGAAG___ATATGTACAAGCTGACCTCTGAATTGCTTGGAGAGGGAGCCTATGCCAAAGTTCAAGGTGCCGTGAGC...GTGGAGACGCTGTATCAGTGTCAGGGAAACAA___GAACATTTTGGAGCTGATTGAGTTCTTTGAAGATGACACAAGGTTTTACTTGGTCTTcGAGAAATTGCA rddadwregmmpystelifyiemdppALPPKPPKPMTSAVPNGMKDSSVSLQDAEWYWGDISr|dgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-interacting serine/threonine-protein kinase 1 CAMK MAPKAPK MNK Q9BUB5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 404 SLC25A44::RPS10P7 ENSG00000160785.14::ENSG00000223396.4 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 76 FALSE NA SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ RPS10P7 ENSG00000223396.4 transcribed_processed_pseudogene + + chr1:201518703-201584367:+ chr1:201583679:+ chr1:201487831-201553495:+ chr1:201552807:+ chr1:156198497,chr1:156198488,chr1:156198483 chr1:201537805,chr1:201537793,chr1:201537793 NA NA chr1:156168288,chr1:156168279,chr1:156168274 chr1:201506933,chr1:201506921,chr1:201506921 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 2 1 5 230 3 ENST00000684582.1 ENST00000648727.1 downstream upstream mismatches(1) GCGACCGGCAGACGGCATTCGCTGGGAACGACGGATAGACTGGGGGCTGCGGCCTAGAGGTCCGGGCTTGGAGTTCGCCTCAGACGCGGTGGAGCCGCCGGAGTCTGAGAAG|GAAGCCATGGAAATAAATAAGGAGCTGTTGAAGTTGCCAGCTCCCTGGAGTAACTGTGTAAACCTCCGGTCTTCTATTCTCATGGCCAATAGTGCTTCCACTGGTCAAAACTCAAGCCTCAAGATAAAGCATGTAAATAGCTTAAGAAGAGCAGTGCTGGTGCCTGGGGGAGAGGAGCCAGTCAGGACCTTCAGCTTCCCAGGGAAACTTGGATTGAGTAGAATGTAGCAATCTCACTTTGCAGCGTGTCCTTCAG...CTCTGTtaTtCAACTTCGatCTCTGAAAAATTAAAGAATCCAACTGGATCATCTCCAAGATCCTTTCCAATTGAGAAATTCCATCACCTGTGATGATTTTT RPADGIRWERRIDWGLRPRGPGLEFASDAVEPPESEK|eameinkellklpapwsncvnlrssilmansastgqnsslkikhvnslrravlvpggeepvrtfsfpgklglsrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 406 KMT2B::DMRT1 ENSG00000272333.8::ENSG00000137090.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 51 TRUE 77 FALSE NA KMT2B ENSG00000272333.8 protein_coding + + chr19:35717973-35738880:+ chr19:35721804:+ chr19:36208875-36229781:+ chr19:36212706:+ DMRT1 ENSG00000137090.12 protein_coding + + chr9:841690-969090:+ chr9:967985:+ chr9:841690-969090:+ chr9:967985:+ chr19:35722440,chr19:35722440,chr19:35722440,chr19:35722440 chr9:924629,chr9:924626,chr9:924602,chr9:924580 NA NA chr19:36213342,chr19:36213342,chr19:36213342,chr19:36213342 chr9:924629,chr9:924626,chr9:924602,chr9:924580 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 4 4 0 266 11 ENST00000673918.2 ENST00000382276.8 downstream upstream none CCTCCTCCTGCCGATGACTCTCCAGCTGAGCCTGAGCCTCGGGCAGTGGGCCGCACCAACCACCTCAGCCTGCCTCGATTCGCCCCTGTGGTCACCACTCC...GCGTGGGTTCCTTGCCGCTGTCTGGGGTAGAGGAGAAGATGTTCAGCCTCCTCAAGAGAGCCAAAGTGCAGCTATTCAAGATCGATCAGCAGCAGCAGCAGAAGGTGGCAGCTTCCATGCCG|TATTCTCGCCGCCCAGCAGTCAAGATTCTGGCTTGGTTTCCCTCTCGAGCAGCTCTCCTATTAGTAACAAGAGCACAAAGGCAGTGCTTGAATGTGAGCCTGCGTCGG VGSLPLSGVEEKMFSLLKRAKVQLFKIDQQQQQKVAASMP|ysrrpavkilawfpsraalllvtraqrqclnvslr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 408 HDAC5::GPATCH8 ENSG00000108840.16::ENSG00000186566.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HDAC5 ENSG00000108840.16 protein_coding - - chr17:44076746-44123702:- chr17:44079144:- chr17:42154114-42201070:- chr17:42156512:- GPATCH8 ENSG00000186566.13 protein_coding - - chr17:44395281-44503430:- chr17:44419311:- chr17:42472649-42580798:- chr17:42496679:- chr17:44078890,chr17:44078892,chr17:44078894 chr17:44420054,chr17:44420052,chr17:44420055 NA NA chr17:42156258,chr17:42156260,chr17:42156262 chr17:42497422,chr17:42497420,chr17:42497423 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%)| HDAC4_Gln(100%),Hist_deacetyl(100%)| 1 4 3 203 25 ENST00000225983.10 ENST00000591680.6 upstream downstream duplicates(1),mismatches(1) CAGAT___GTTTTGGCCACTTGACCAGGCAGCTGATGACCCTGGCAGGGGGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGCCATCTGTGATGCCTCTGAGGCTTGTGTCTCGGCTCTGCTCAGTGTAGAG|GAAGGCACACAGGATTATTATGAATCTGAGATAATAG___GTTCCCGTGGCTTCTGACTGATACTGGGGAACTGGCACATTG...___AGATTAAAAGATCTGAAGCAGAGAGAGTTTGCTCGAAATGTCTCTTCAAGATCCCGC...AGTTGGCAGAGCAAAGAAAACAAGCTGAATG___TGCACCTGGAAGTGGTCCCATGTTCAAACCAACCACAGTGGCTGTAGATGAAGAAGGTGGAGAAGATGA RCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVE|egtqdyyeseiigsrgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 409 ALOX12-AS1::DLG4 ENSG00000215067.12::ENSG00000132535.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 78 TRUE 35 ALOX12-AS1 ENSG00000215067.12 lncRNA - - chr17:6875232-7012530:- chr17:6979078:- chr17:6778551-6915849:- chr17:6882397:- DLG4 ENSG00000132535.22 protein_coding - - chr17:7187187-7219841:- chr17:7197052:- chr17:7090506-7123160:- chr17:7100371:- NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site duplication high none |Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(51%),PDZ_domain(30%),SH3_domain(100%) |Guanylate_kin(100%),PDZ(34%),PDZ_6(26%),PDZ_assoc(2%),SH3_1(100%),SH3_2(100%) 1 0 7 2 209 unknown ENST00000399506.9 upstream downstream mismappers(1) CTGAGTAGCTGGGACTACAGGTGCCTGCCACCACGCCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGAGGTTTCACCATGTTAGCCAGGATGGTCTCGATCCCTGACCTCGTGATCTGCCCTCCTTGGCCCCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGATAG|CTTATTCCCAGCACCTGGACAATGAGATCAGTCACAGCAGCTACCTGGGCACCGACTACCCCACAGCCATGACCCCCACTTCCCCTCGGCGCTACTCTCCAGTGGCCAAGGACCTGCTCGGGGAGGAAGACATTCCCCGAGAACCGAGGCGAATTGTGATCCACCGGGGCTCCACGGGCCTGGGCTTCAACATCGTGGGTGGCGAGGACGGTGAAGGCATCTTCATCTCCTTTATCCTGGCCGGGGGCCCTGCAGACCTCAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 410 ALOX12-AS1::DLG4 ENSG00000215067.12::ENSG00000132535.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 78 TRUE 35 ALOX12-AS1 ENSG00000215067.12 lncRNA - - chr17:6875232-7012530:- chr17:7002484:- chr17:6778551-6915849:- chr17:6905803:- DLG4 ENSG00000132535.22 protein_coding - - chr17:7187187-7219841:- chr17:7197052:- chr17:7090506-7123160:- chr17:7100371:- chr17:6981403 chr17:7198992 NA NA chr17:6884722 chr17:7102311 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(51%),PDZ_domain(30%),SH3_domain(100%) |Guanylate_kin(100%),PDZ(34%),PDZ_6(26%),PDZ_assoc(2%),SH3_1(100%),SH3_2(100%) 0 1 4 93 209 ENST00000574377.5 ENST00000399506.9 upstream downstream none CAGGCTGGTCTTGAACTCCTGGTCTTAAGCAATCATACTGCTTTGGCCACCCAAAGCACTGGGATTACAGGCGTGAACCACCACACCCAGCTCTTAAAACCACAGTATTTCTAG|CTTATTCCCAGCACCTGGACAATGAGATCAGTCACAGCAGCTACCTGGGCACCGACTACCCCACAGCCATGACCCCCACTTCCCCTCGGCGCTACTCTCCAGTGGCCAAGGACCTGCTCGGGGAGGAAGACATTCCCCGAGAACCGAGGCGAATTGTGATCCACCGGGGCTCCACGGGCCTGGGCTTCAACATCGTGGGTGGCGAGGACGGTGAAGGCATCTTCATCTCCTTTATCCTGGCCGGGGGCCCTGCAGACCTCAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 411 ALOX12-AS1::DLG4 ENSG00000215067.12::ENSG00000132535.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 78 TRUE 35 ALOX12-AS1 ENSG00000215067.12 lncRNA - - chr17:6875232-7012530:- chr17:7012196:- chr17:6778551-6915849:- chr17:6915515:- DLG4 ENSG00000132535.22 protein_coding - - chr17:7187187-7219841:- chr17:7197052:- chr17:7090506-7123160:- chr17:7100371:- chr17:6981403 chr17:7198992 NA NA chr17:6884722 chr17:7102311 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(51%),PDZ_domain(30%),SH3_domain(100%) |Guanylate_kin(100%),PDZ(34%),PDZ_6(26%),PDZ_assoc(2%),SH3_1(100%),SH3_2(100%) 2 0 2 165 209 ENST00000653385.1 ENST00000399506.9 upstream downstream none CGGAACTCCTGGGAACTGGGGCGATGGGCTCTTAGTATCGGAGGATTGGAGCCATCTGATTTTTACCTGAAATTCCTTAGTCTCTCCTGTGTTGGGGAAATG|CTTATTCCCAGCACCTGGACAATGAGATCAGTCACAGCAGCTACCTGGGCACCGACTAC...CTCGGCGCTACTCTCCAGTGGCCAAGGACCTGCTCGGGGAGGAAGACATTCCCCGAGAACCGAGGCGAATTGTGATCCACCGGGGCTCCACGGGCCTGGGCTTCAACATCGTGGGTGGCGAGGACGGTGAAGGCATCTTCATCTCCTTTATCCTGGCCGGGGGCCCTGCAGACCTCAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 412 ARFIP1::ENSG00000287555 ENSG00000164144.16::ENSG00000287555.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 79 TRUE 36 ARFIP1 ENSG00000164144.16 protein_coding + + chr4:152779937-152918463:+ chr4:152780226:+ chr4:153701089-153839615:+ chr4:153701378:+ ENSG00000287555 ENSG00000287555.1 lncRNA + + chr4:152448275-152513788:+ chr4:152512393:+ chr4:153369427-153434940:+ chr4:153433545:+ chr4:152813570,chr4:152813569 chr4:152479545,chr4:152479541 NA NA chr4:153734722,chr4:153734721 chr4:153400697,chr4:153400693 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 4 3 222 10 ENST00000353617.7 ENST00000671401.1 downstream upstream duplicates(1) CTTGGTTCTGGTTCTGGAGGCTGGGTTGAGAGGTCGCCGGTCCGACTGTCCTCGGCGGTTGGTCAGTGTGAATTTGTGACAGCTGCAGTTGCTCCCCGCCCCCGAGCAGCCGAGGTGCGTGGGGGAAGGGGAAGAAGGAAAAGGTCCGGGTCGCGTTTCCGCTCAGTTTTTGCCAGGGTTGAGGCGATTCCAGAGAGCGGCGGAAAGGATAAGCCTCGACTTAGAAGCTACCGAGTTACCCTAAGAAAG|ACAACAGGAAACCACTGAAAGCTTTGATAAGAATGGAGGACGATATTAAGAAATTAATGTTCTTGAAGAATGAATGTGATCTCAAAAAGCAGAAACAACCCCAAAGTCCATCAACTGATGAATAAAATGTGGTACCCTCCATACAACTGAATACTATTCAGTCCTAAAAAGAATGAAGTTCTCATGCATGCTACAACACAGAAGAACACTGAAAACATCGTGTTACGTGAAAGAAGCCAAACACAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 413 ARFIP1::ENSG00000287555 ENSG00000164144.16::ENSG00000287555.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 79 TRUE 36 ARFIP1 ENSG00000164144.16 protein_coding + + chr4:152779937-152918463:+ chr4:152809733:+ chr4:153701089-153839615:+ chr4:153730885:+ ENSG00000287555 ENSG00000287555.1 lncRNA + + chr4:152448275-152513788:+ chr4:152512393:+ chr4:153369427-153434940:+ chr4:153433545:+ chr4:152813570,chr4:152813569 chr4:152479545,chr4:152479541 NA NA chr4:153734722,chr4:153734721 chr4:153400697,chr4:153400693 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 3 19 10 ENST00000510831.5 ENST00000671401.1 downstream upstream none CAAGAAGCTAGTTCCCAGCCTTCACTTTTTTGGTTGTACAATATACTAGCTCTCTAG|ACAACAGGAAACCACTGAAAGCTTTGATAAGAATGGAGGACGATATTAAGAAATTAATGTTCTTGAAGAATGAATGTGATCTCAAAAAGCAGAAACAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 414 BCAS4::THAP8 ENSG00000124243.19::ENSG00000161277.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 52 TRUE 80 TRUE 37 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50830380:+ chr20:49411431-49493714:+ chr20:49446917:+ THAP8 ENSG00000161277.11 protein_coding - - chr19:36034984-36054739:- chr19:36040136:- chr19:36525886-36545641:- chr19:36531038:- chr20:50837778,chr20:50837774 chr19:36041817,chr19:36041821 NA NA chr20:49454315,chr20:49454311 chr19:36532719,chr19:36532723 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |THAP_domain(70%) |THAP(1%) 4 1 2 132 94 ENST00000358791.9 ENST00000607730.1 downstream downstream mismatches(1) GTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCGAG___GCGAAGGAGGTGGAGGAGACCATCGAGGGCATGCTCCTCAGGCTGGAAGAGTTTTGCAGCCTGGCTGACCTG___ATCAGGAGTGATACTTCACAGATCCTGGAGGAAAACATCCCAGTCCTTAAGGCCAAACTGACAGAAATGCGTGGCATCTATGCCAAAGTGGACCGGCTAGAG|GTTCCCACTGAAGGATGGTCCCCGGCTGCAGGCCTGGCTGCAGCACATGGGCTGTGAGCACTGGGTGCCCAGCTGCCACCAGCACTTGTGCAGCGAGCACTTCACACCCTCCTGCTTCCAGTGGCGCTGGGGTGTGCGCTtCCTGCGGCCaGATGCAGgGCCCcCCATCTcCcCCCGGGGACCACCTGCCAAG___AGTCAGCGGAGGACCCGAAGCACCCAGAAGCCAGTCTCGCCGCCGCCTCCCCTACAGAAGAATACACCCCTGCCCCAGAGCCCTGCCATCCCAGTCTCTGG VALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE|VPTEGWSPAAGLAAAHGL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 415 BCAS4::THAP8 ENSG00000124243.19::ENSG00000161277.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 53 TRUE 80 TRUE 37 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50830380:+ chr20:49411431-49493714:+ chr20:49446917:+ THAP8 ENSG00000161277.11 protein_coding - - chr19:36034984-36054739:- chr19:36039718:- chr19:36525886-36545641:- chr19:36530620:- chr20:50837778,chr20:50837774 chr19:36041817,chr19:36041821 NA NA chr20:49454315,chr20:49454311 chr19:36532719,chr19:36532723 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 1 3 1 132 145 ENST00000358791.9 ENST00000292894.2 downstream downstream none GAGGAGACCATCGAGGGCATGCTCCTCAGGCTGGAAGAGTTTTGCAGCCTGGCTGACCTG___ATCAGGAGTGATACTTCACAGATCCTGGAGGAAAACATCCCAGTCCTTAAGGCCAAACTGACAGAAATGCGTGGCATCTATGCCAAAGTGGACCGGCTAGAG|AGTCAGCGGAGGACCCGAAGCACCCAGAAGCCAGTCTCGCCGCCGCCTCCCCTACAGAAGAATACACCCCTGCCCCAGAGCCCTGCCATCCCAGTCTCTGGC...AGATGGAGGAGGAAAGACATTATACGTGGGCTTGGCCCAGCCCCACCGCCCACGCCTGGGTAGTAGCAGTGCCTCCCTCAAGGGCCTGGGTTCTACCACCC EETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLE|SQRRTRSTQKPVSPPPPLQKNTPLPQSPAIPVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 416 BCAS4::THAP8 ENSG00000124243.19::ENSG00000161277.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 80 TRUE 37 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50830380:+ chr20:49411431-49493714:+ chr20:49446917:+ THAP8 ENSG00000161277.11 protein_coding - - chr19:36034984-36054739:- chr19:36035592:- chr19:36525886-36545641:- chr19:36526494:- chr20:50837778,chr20:50837774 chr19:36041817,chr19:36041821 NA NA chr20:49454315,chr20:49454311 chr19:36532719,chr19:36532723 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none none 1 0 0 132 91 ENST00000358791.9 ENST00000292894.2 downstream downstream none GTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCGA...ACATCCCAGTCCTTAAGGCCAAACTGACAGAAATGCGTGGCATCTATGCCAAAGTGGACCGGCTAGAG|ACAACAGCCCAGACCCTTGGACCTGAGGAATCC IPVLKAKLTEMRGIYAKVDRLE|TTAQTLGPEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 417 ARSB::FHL2 ENSG00000113273.17::ENSG00000115641.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARSB ENSG00000113273.17 protein_coding - - chr5:78777209-78986087:- chr5:78955295:- chr5:78073032-78281910:- chr5:78251118:- FHL2 ENSG00000115641.19 protein_coding - - chr2:105357712-105438513:- chr2:105386540:- chr2:105974169-106054970:- chr2:106002997:- chr5:78947477,chr5:78947481 chr2:105388662,chr2:105388663 NA NA chr5:78243300,chr5:78243304 chr2:106005119,chr2:106005120 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Sulfatase(80%)|LIM_domain(100%) Sulfatase(29%)|LIM(100%) 1 1 4 45 235 ENST00000264914.10 ENST00000393352.7 upstream downstream duplicates(1) AAAAATATGTATTCAACAAACATATTCACCAAAAGGGCTATAGCCCTCATAACTAACCATCCACCAGAGAAG___CCTCTGTTTCTCTACCTTGCTCTCCAGTC...CAAGAACAGGCATCACTATGCAGGAATGGTGTCCCTTATGGATGAAGCAGTAGGAAATGTCACTGCAGCTTTAAAAAGCAGTGGGCTCTGGAACAACACGGTGTTCATCTTTTCTACAG|GTTGCTGAAAAGCCAGGAGTCAAAATGACTGAGCGCTTTGACTGCCACCATTGCAACGAATCTCTCTTTGGCAAGAAGTACATCCTGCGGGAGGAGAGCCCCTACTGCGTGGTGTGCTTTGAGACCCTGTTCGCCAACACCTGCGtGGAG KNRHHYAGMVSLMDEAVGNVTAALKSSGLWNNTVFIFST|gc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 418 FHL2::ENSG00000287862 ENSG00000115641.19::ENSG00000287862.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FHL2 ENSG00000115641.19 protein_coding - - chr2:105357712-105438513:- chr2:105396647:- chr2:105974169-106054970:- chr2:106013104:- ENSG00000287862 ENSG00000287862.1 lncRNA - + chr5:87863703-88144455:- chr5:88049841:+ chr5:87159520-87440272:- chr5:87345658:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 1 3 2 109 5 ENST00000322142.13 unknown upstream upstream duplicates(1),mismatches(1) CAGCCCCGTCCGGGAGTCCCCGGCCCGCTGCGGTGCC___TGGCTGAGAACTGTGTCTTCCTGGAGACTAGGCTGGCATTTTGACTTTGGG|ATACTCTTGTGAGAAGGCACACTGGGTGATTTCAATGGTGGATACTCTCAGCCCTGAAGTGGATTTGACATGTAGACGAG...___TAACTTTCAAGACACTGAAGAACTGGAACATGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCaGTCTACAGCTCCCAGCCTGAGCGACGCAGAAGACGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 420 PEX1::CDK6 ENSG00000127980.16::ENSG00000105810.10 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PEX1 ENSG00000127980.16 protein_coding - - chr7:92487020-92528520:- chr7:92499704:- chr7:92116334-92157834:- chr7:92129018:- CDK6 ENSG00000105810.10 protein_coding - - chr7:92604921-92836573:- chr7:92605879:- chr7:92234235-92465887:- chr7:92235193:- chr7:92497881,chr7:92497884,chr7:92497884 chr7:92606681,chr7:92606638,chr7:92606681 NA NA chr7:92127195,chr7:92127198,chr7:92127198 chr7:92235995,chr7:92235952,chr7:92235995 NA NA sense sense out-of-frame CDS/splice-site 3'UTR duplication high none ATPase_family_associated_with_various_cellular_activities_(AAA)(62%),Peroxisome_biogenesis_factor_1__N-terminal_(100%)| AAA(31%),PEX-1N(100%),PEX-2N(100%),RuvB_N(2%)| 1 1 4 162 35 ENST00000248633.9 ENST00000424848.3 upstream downstream mismatches(2) CTGGGTTGGGACAAGATTGGTGGGTTACATGAAGTTAGGCAGATACTCATGGATACTATCCAGTTACCTGCCAAG___TATCCAGAATTATTTGCAAACTTGCCCATACGACAAAGAACAGGAATACTGTTGTATGGTCCGCCTGGAACAGGAAAAACCTTACTAGCTGGGGTAATTGCACGAGAGAGTAGAATGAATTTTATAAGTGTCAAG|ATTGAGAGTTACCACAGTGGCCTGTCGGGTCCACCCTGTGGGTGCAGCACAGCTCTCTGAAAGCAAGAACCTTCCTACCTATTCTAACGTTTTTGCCCTCTAAGAAAAATGGCCTCAG___GATTCTTCATTTGAAAATGACAACTATTCTGTGATAAAGAAAGTCAAGTTTAC LGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVK|iesyhsglsgppcgcstal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 6 CMGC CDK CDK4 Q00534 TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 92157621 FALSE 92355107 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 6 1 Yes ALL leukaemia_lymphoma oncogene, fusion translocation 422 ATAD2B::ITSN2 ENSG00000119778.15::ENSG00000198399.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD2B ENSG00000119778.15 protein_coding - - chr2:23748664-23927123:- chr2:23857415:- chr2:23971534-24149993:- chr2:24080285:- ITSN2 ENSG00000198399.16 protein_coding - - chr2:24202864-24360536:- chr2:24221066:- chr2:24425733-24583405:- chr2:24443935:- chr2:23834544,chr2:23834555 chr2:24240004,chr2:24240007 NA NA chr2:24057414,chr2:24057425 chr2:24462873,chr2:24462876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none ATPase_family_associated_with_various_cellular_activities_(AAA)(63%)|C2_domain(100%),Pleckstrin_homology_domain(100%),RhoGEF_domain(100%) AAA(20%)|C2(100%),PH_13(100%),RhoGEF(100%) 3 0 2 27 89 ENST00000238789.10 ENST00000355123.9 upstream downstream none GTTTGAGCAAGTGGGTTGGTGAATCTGAAAGGCAACTTAGGCTTCTTTTTGATCAG___GCATATTTGATGAGACCTTCTATAATATTTTTTGATGAAATAGATGGATTAGCTCCAGTTCGCTCTAGCAGACAAGATCAGATCCACAG|GGTGTGCTGATCTGCAAACCCTGGACACAATGCAGCCAATTGAGAGGAAAAGACAGGGCTATATTCATGAGCTGATTCAGACCGAAGAGCGGTACATGGCTGACCTTCAGCTCGTCGTCGAG___GTTTTTCAGAAACGCATGGCAGAGTCAGGC LSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHr|vc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 24021008 FALSE 24426652 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 423 FBXW7::ARFIP1 ENSG00000109670.17::ENSG00000164144.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXW7 ENSG00000109670.17 protein_coding - - chr4:152320544-152536092:- chr4:152534941:- chr4:153241696-153457244:- chr4:153456093:- ARFIP1 ENSG00000164144.16 protein_coding + - chr4:152779937-152918463:+ chr4:152789019:- chr4:153701089-153839615:+ chr4:153710171:- chr4:152479541,chr4:152479545 chr4:152813569,chr4:152813570 NA NA chr4:153400693,chr4:153400697 chr4:153734721,chr4:153734722 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 0 4 1 68 18 ENST00000603548.6 unknown upstream downstream none GGAGAAGTGGCCCTGGACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAGGTAAGCGGGGCCGCCGCCTCCCCTCCCCTGGCAGCG...CTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTTTCTAAAAGT|AAACATATCACCCAGTCTAATGAGAAAAACAGCAGACAAGTCCCAACTGAGGGACAGTCTACAAAATACCTGACCAGGCAGTAATCTTCAAAACTATCAACTTGTCATCAAAAACAAGGAAATCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila) 1 Yes colorectal, endometrial, T-ALL epithelial, leukaemia_lymphoma TSG missense, nonsense, large_deletion, frameshift FALSE NA NA NA NA NA NA NA NA NA 427 SSH2::RNASEH2B-AS1 ENSG00000141298.19::ENSG00000233672.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29671935:- chr17:27952956-28257294:- chr17:27998953:- RNASEH2B-AS1 ENSG00000233672.9 lncRNA - + chr13:50862172-50910764:- chr13:50866100:+ chr13:51436308-51484900:- chr13:51440236:+ chr17:29669145 chr13:50865364 NA NA chr17:27996163 chr13:51439500 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 0 3 1 62 7 ENST00000540801.6 unknown upstream upstream none CGCTAATTCATTTGGATGGTGATGG___TGGGTTCAGTGTATCGACGGATAACAGAGTTCACATATTCAAACCTGTATCTGTGCAGGCAATGTG___GTCTGCACTA...CTCAGTCAATGAATGGAATGCAATGCAAGATGTACAGTCCCACCGGCCCGACTCTCCAGCTCTCTTCACCGACAT|GAAAAAAAGAAATCACTTCCTGGCTGGGACCACTGACCACGTGGAGTTTGCACATTCTGCCCATGTCTGCACGGGTTTTCCCTGGGTACTCCAGTTTCCTCTCACCTCCCAGAGAGCCGCGCATTAG___GGCTGGTTCCTG...CACCATGAAGACCTAAAAGAAATATGAG___AAATCTCTGGCTGATTTTTAAAGCATTTTGTAGATCACATCAAGTTAAAAAGCTTCTGCACAGCAAAGAAAAC SVNEWNAMQDVQSHRPDSPALFTDm|kkrnhflagttdhvefahsahvctgfpwvlqfpltsqraah* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 428 ADAM32::ADAM9 ENSG00000197140.15::ENSG00000168615.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM32 ENSG00000197140.15 protein_coding + + chr8:39106990-39284917:+ chr8:39107833:+ chr8:38964509-39142436:+ chr8:38965352:+ ADAM9 ENSG00000168615.13 protein_coding + + chr8:38996754-39105445:+ chr8:39101863:+ chr8:38854273-38962964:+ chr8:38959382:+ chr8:39112792,chr8:39112792,chr8:39112787,chr8:39112789 chr8:39092323,chr8:39092333,chr8:39092317,chr8:39092317 NA NA chr8:38970311,chr8:38970311,chr8:38970306,chr8:38970308 chr8:38949842,chr8:38949852,chr8:38949836,chr8:38949836 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Reprolysin_family_propeptide(3%)| Pep_M12B_propep(0%)| 1 3 0 9 693 ENST00000437682.6 ENST00000677004.1 downstream upstream duplicates(2),low_entropy(1),mismatches(1) AACACCGAGAGCACCCCGTCTCCGGGGCCTCCGGAGAACGCTGTCCCATGAACGTGCGGGGAGCGGCCCCCGGCGTCCGCGCGTCCCCGCGTCCCTGGCAA...GGCTTCCCGCTGGCAGCCCCGAAGCCGCACCATGTTCCGCCTCTGGTTGCTGCTGGCCGGGCTCTGCGGCCTCCTGGCGTCAAGACCCG|CCTATATATGCAAACAGATTTGCAGTACCAACCTATGCAGCCAAGCAACCTCAGCAGTTCCCATCAAG___GCCACCTCCACCACAACCGAAAGTATCATCTCAGGGAAACTTAATTCCTGCCCGTC LPAGSPEAAPCSASGCCWPGSAASWRQDP|PIYANRFAVPTYAAKQPQQFPSRPPPPQPKVSSQGNLIPAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 429 GALNT16::EXD2 ENSG00000100626.17::ENSG00000081177.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69333600:+ chr14:69725994-69823750:+ chr14:69800317:+ EXD2 ENSG00000081177.19 protein_coding + + chr14:69191498-69244020:+ chr14:69209424:+ chr14:69658215-69710737:+ chr14:69676141:+ chr14:69338115,chr14:69338113 chr14:69204796,chr14:69204791 NA NA chr14:69804832,chr14:69804830 chr14:69671513,chr14:69671508 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Glycosyl_transferase_family_2(100%)|3'-5'_exonuclease(100%) Glycos_transf_2(100%)|DNA_pol_A_exo1(100%) 1 1 2 79 84 ENST00000337827.8 ENST00000685843.1 downstream upstream mismatches(1) GGaTcAgCCctTCCCGAGcGCGTGGGGCGGACGTGGCTGCAGCTACCGTTCTCACCTTTCTGGATAGCCACTGCGAAGgGAACACCGAGgGGCTGCCGC...ATAAG___GACGCCTGTCATAGCTGGAGGAATCTTCGTGATCGACAAGTCCTGGTTTAACCACTTGGGAAAGTATGATGCCCAGATGGACATCTGGGGGGGAGAGAATTTTG|ATTGTGGGATTAGTGATATGCTTTTCTAAAGAGTAGAAAAGTCGAAGATGTCTAGACAGAACTTAGTGGCTTTGACAGTGACTACCCTTCTGGGTGTGGCTGTAGG...GCACCATTTTGAAAGTTGGAGTGGGATGCTCAGAAGATGCCAGCAAGCTTCTGCAGGATTATGGCCTCGTTGTTAGGGGGTGCCTGGACCTCCGATACCTA IRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENF|dcgisdmlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 430 MEPE::PTPN13 ENSG00000152595.17::ENSG00000163629.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 81 TRUE 38 MEPE ENSG00000152595.17 protein_coding + + chr4:87821398-87846814:+ chr4:87838685:+ chr4:88742550-88767966:+ chr4:88759837:+ PTPN13 ENSG00000163629.13 protein_coding + + chr4:86594315-86815171:+ chr4:86686710:+ chr4:87515468-87736324:+ chr4:87607863:+ chr4:87840320,chr4:87840319 chr4:86675339,chr4:86675334 NA NA chr4:88761472,chr4:88761471 chr4:87596492,chr4:87596487 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%),Kinase_non-catalytic_C-lobe_domain(28%),PDZ_domain(100%),Protein-tyrosine_phosphatase(100%),Unstructured_linker_region_on_PTN13_protein_between_PDZ(100%) |FERM_C(100%),FERM_M(100%),FERM_N(100%),KIND(4%),PDZ(100%),PDZ_6(100%),PTN13_u3(100%),Y_phosphatase(100%) 1 1 2 5 238 ENST00000424957.8 ENST00000436978.5 downstream upstream none ACAGAGATTCTCAAAGATGCGAGTTTTCTGTGTGGGACTACTCCTTTTCAGTGTGACCTGGGCAGCACCA___ACATTTCAACCACAGACTGAGAAAACTAAGCAAAGCTGTGTGGAAGAGCAGAGG|ATCCACATTTATTCTCTTGGAATGACACTGTATTGGGGGGCTGATTATGAAGTGCCTCAGAGCCAA___CCTATTAAGCTTGGAGATCATCTCAcCAGCATACTGCTTGGAATGTGTGA MRVFCVGLLLFSVTWAAPTFQPQTEKTKQSCVEEQR|IHIYSLGMTLYWGADYEVPQSQPIKLGDHLtSILLGMC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 13 1 Yes lung, NSCLC, gastric, peritoneal carcinomatosis hepatocellular Familial Hepatocellular Carcinoma epithelial TSG missense, nonsense 432 MEPE::PTPN13 ENSG00000152595.17::ENSG00000163629.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 81 TRUE 38 MEPE ENSG00000152595.17 protein_coding + + chr4:87821398-87846814:+ chr4:87839777:+ chr4:88742550-88767966:+ chr4:88760929:+ PTPN13 ENSG00000163629.13 protein_coding + + chr4:86594315-86815171:+ chr4:86686710:+ chr4:87515468-87736324:+ chr4:87607863:+ chr4:87840320,chr4:87840319 chr4:86675339,chr4:86675334 NA NA chr4:88761472,chr4:88761471 chr4:87596492,chr4:87596487 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%),Kinase_non-catalytic_C-lobe_domain(28%),PDZ_domain(100%),Protein-tyrosine_phosphatase(100%),Unstructured_linker_region_on_PTN13_protein_between_PDZ(100%) |FERM_C(100%),FERM_M(100%),FERM_N(100%),KIND(4%),PDZ(100%),PDZ_6(100%),PTN13_u3(100%),Y_phosphatase(100%) 0 0 0 4 238 ENST00000395102.8 ENST00000436978.5 downstream upstream mismatches(1) TACAAGGGTCACTATGAGAAACATGGGCATTATGTTTTTAAGTGTGTTTACATGTCACCTGAGAAGAAAAATCAAACTGATGTAAAG|ATCCACATTTATTC YKGHYEKHGHYVFKCVYMSPEKKNQTDVK|IHIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 13 1 Yes lung, NSCLC, gastric, peritoneal carcinomatosis hepatocellular Familial Hepatocellular Carcinoma epithelial TSG missense, nonsense 433 ENSG00000267698::BCAS4 ENSG00000267698.2::ENSG00000124243.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267698 ENSG00000267698.2 lncRNA + + chr19:36014493-36045972:+ chr19:36019384:+ chr19:36505395-36536874:+ chr19:36510286:+ BCAS4 ENSG00000124243.19 protein_coding + - chr20:50794894-50877177:+ chr20:50833067:- chr20:49411431-49493714:+ chr20:49449604:- chr19:36041821,chr19:36041817 chr20:50837774,chr20:50837778 NA NA chr19:36532723,chr19:36532719 chr20:49454311,chr20:49454315 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 0 1 3 34 6 ENST00000586962.1 unknown downstream downstream none CGCCATCACCTGCCCACGCCGCAGGGAa___GTTCGTCCAGCTCCACGCCCACCCACTGGCCGCTGGCAAACTCCGTGGTCCCACAGAACCGCAGTGTGCCCGTCTGGGGAGAGAAGGGAGGCGATGGCTAAGGAAGGAATGCTGGGAGGCCAACGTGGAGTGCCCACACACGGGCAGCAAG|GTCCTGTAGATCCCATACCTCCGTCGCTACTTCCCTTCACAGCACTTGCCTAATGAAAGCAAATCCTGGAGAAGTGTGGG...GGGAGGTCACTGTGAATCATCCAG___GATCTTGCTCTGTCGCCCAGGCTGGAATACAGTGGCACAATCAATGCTCACAGTAGCCATGACCTCCTGGACTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 435 PKIB::TRDN-AS1 ENSG00000135549.16::ENSG00000235535.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 82 TRUE 39 PKIB ENSG00000135549.16 protein_coding + + chr6:122471917-122726373:+ chr6:122633367:+ chr6:122793062-123047518:+ chr6:122954512:+ TRDN-AS1 ENSG00000235535.9 lncRNA + + chr6:123389421-123511509:+ chr6:123433936:+ chr6:123710566-123832654:+ chr6:123755081:+ chr6:122640541,chr6:122640539 chr6:123413370,chr6:123413365 NA NA chr6:122961686,chr6:122961684 chr6:123734515,chr6:123734510 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 1 1 1 44 1 ENST00000392490.5 ENST00000587106.6 downstream upstream none CTGCGCGCGGCTG___GAGTCATGCTATACTGAAAAGACACTTCATCAAGATAACTCTGGGAGAAGCAGAAAACCCTGTGCCAGGGACAGGAAAGATAGGA|TAGGTGAAACGTTtTTTCTTCAAAAATATCACCTTGTGGTaGAAGAGAGAAAGAATATCCATGCTT...CACATCAAACTGTTTGTGGTACTTCTAAACTTCGTGGAAGAGCCCTGTTTCATAAATCTGAGACAGCCTTGGTCTGAGGGAGCAAAGACAGAGAATcCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 436 PKIB::TRDN-AS1 ENSG00000135549.16::ENSG00000235535.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 82 TRUE 39 PKIB ENSG00000135549.16 protein_coding + + chr6:122471917-122726373:+ chr6:122633367:+ chr6:122793062-123047518:+ chr6:122954512:+ TRDN-AS1 ENSG00000235535.9 lncRNA + + chr6:123389421-123511509:+ chr6:123429131:+ chr6:123710566-123832654:+ chr6:123750276:+ chr6:122640541,chr6:122640539 chr6:123413370,chr6:123413365 NA NA chr6:122961686,chr6:122961684 chr6:123734515,chr6:123734510 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 1 0 1 44 0 ENST00000615438.4 ENST00000587106.6 downstream upstream none GAGAACTTGGACATACATACTTCCTATGGAAG___GAGTCATGCTATACTGAAAAGACACTTCATCAAGATAACTCTGGGAGAAGCAGAAAACCCTGTGCCAGGGACAGGAAAGATAGGA|AATTAGAAGACAAAGTGCTTTTGGGTCtCAAAAGACAGTGAAGCTTTATTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 439 ENSG00000285188::ELL ENSG00000285188.1::ENSG00000105656.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285188 ENSG00000285188.1 protein_coding - - chr19:18207961-18255419:- chr19:18216741:- chr19:18318771-18366229:- chr19:18327551:- ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18458329:- chr19:18553473-18632926:- chr19:18569139:- chr19:18214463,chr19:18214465 chr19:18460787,chr19:18460786 NA NA chr19:18325273,chr19:18325275 chr19:18571597,chr19:18571596 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none 3'5'-cyclic_nucleotide_phosphodiesterase(45%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%)|Occludin_homology_domain(100%),RNA_polymerase_II_elongation_factor_ELL__(15%) PDE4_UCR(100%),PDEase_I(23%)|ELL(9%),Occludin_ELL(100%) 1 0 2 11 65 ENST00000355502.7 ENST00000262809.9 upstream downstream none CCTGGCTGTGGGCTTCAAGCTGCTGCAGGCAGAGAACTGCGATATCTTCCAGAACCTCAGCGCCAAGCAGCGACTGAGTCTGCGCAGGATGGTCATTGACATG|GTGGCCAACATGAGTGCTAAGGACGGCACGTGTACACTGCAGGACTGCATGTACAAGGATGTGCAGAAGGACTGGCCTGGCTACTCGGAGGGGGACCAGCAGCTGCTGAAGCGGGTGCTCGTCCG___GAAGCTGTGCC LAVGFKLLQAENCDIFQNLSAKQRLSLRRMVIDM|VANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation 440 PDE4C::ELL ENSG00000105650.23::ENSG00000105656.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4C ENSG00000105650.23 protein_coding - - chr19:18207965-18248200:- chr19:18216741:- chr19:18318775-18359010:- chr19:18327551:- ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18458329:- chr19:18553473-18632926:- chr19:18569139:- chr19:18214463,chr19:18214465 chr19:18460787,chr19:18460786 NA NA chr19:18325273,chr19:18325275 chr19:18571597,chr19:18571596 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none 3'5'-cyclic_nucleotide_phosphodiesterase(45%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%)|Occludin_homology_domain(100%),RNA_polymerase_II_elongation_factor_ELL__(15%) PDE4_UCR(100%),PDEase_I(23%)|ELL(9%),Occludin_ELL(100%) 1 0 2 11 65 ENST00000594617.7 ENST00000262809.9 upstream downstream none CCTGGCTGTGGGCTTCAAGCTGCTGCAGGCAGAGAACTGCGATATCTTCCAGAACCTCAGCGCCAAGCAGCGACTGAGTCTGCGCAGGATGGTCATTGACATG|GTGGCCAACATGAGTGCTAAGGACGGCACGTGTACACTGCAGGACTGCATGTACAAGGATGTGCAGAAGGACTGGCCTGGCTACTCGGAGGGGGACCAGCAGCTGCTGAAGCGGGTGCTCGTCCG___GAAGCTGTGCC LAVGFKLLQAENCDIFQNLSAKQRLSLRRMVIDM|VANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation 441 SSH2::DLEU1 ENSG00000141298.19::ENSG00000176124.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29671935:- chr17:27952956-28257294:- chr17:27998953:- DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50866100:+ chr13:50656305-51480992:+ chr13:51440236:+ chr17:29669145 chr13:50865364 NA NA chr17:27996163 chr13:51439500 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none none 0 2 1 62 7 ENST00000540801.6 unknown upstream upstream none CGCTAATTCATTTGGATGGTGATGG___TGGGTTCAGTGTATCGACGGATAACAGAGTTCACATATTCAAACCTGTATCTGTGCAGGCAATGTG___GTCTGCACTA...CTCAGTCAATGAATGGAATGCAATGCAAGATGTACAGTCCCACCGGCCCGACTCTCCAGCTCTCTTCACCGACAT|GAAAAAAAGAAATCACTTCCTGGCTGGGACCACTGACCACGTGGAGTTTGCACATTCTGCCCATGTCTGCACGGGTTTTCC...CACCATGAAGACCTAAAAGAAATATGAG___AAATCTCTGGCTGATTTTTAAAGCATTTTGTAGATCACATCAAGTTAAAAAGCTTCTGCACAGCAAAGAAAAC SVNEWNAMQDVQSHRPDSPALFTDm|kkrnhflagttdhvefahsahvctgf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 445 ZFAT::ENSG00000286282 ENSG00000066827.16::ENSG00000286282.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134565333:- chr8:135490031-135725292:- chr8:135577576:- ENSG00000286282 ENSG00000286282.1 lncRNA - - chr8:119350291-119416947:- chr8:119371502:- chr8:120362531-120429187:- chr8:120383742:- chr8:134546269,chr8:134546275 chr8:119371996,chr8:119371999 NA NA chr8:135558512,chr8:135558518 chr8:120384236,chr8:120384239 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(100%)| AT_hook(100%),zf-C2H2(100%),zf-H2C2_5(100%),zf-met(100%)| 0 1 1 37 2 ENST00000523243.5 unknown upstream downstream none GTGACATGTGTGGCAAGAAATTCAAATCAAAAGGGACACTGAAAAGTCACAAACTCCTTCACACTGCAGATG___GGAAGCAGTTTAAGTGCACGGTGTGTGAC...CAGAAGCCACAGCTGCTGCGGCACATGGAACAGCATGTCTCCTTCAAG|GAACATCCAGAAATCTTAGCCTTATGGGTACCTGGAGCATGTACTGAGGCTAC...CATCCAGACTTTCCTTGCCTGAGGCAACAGCTTGAGAAGGCCAGAGCAAAACATGGAAAGGAAATTGACATTCTCAGGAGTGATGTGGATTTTGAGAAGAGGAGAAGATTCTTTAAGGAGGTCACCTTATGAAGAAGGAATCCAAAAAAAC QKPQLLRHMEQHVSFK|ehpeilalwvpgactea NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 451 GLS2::TIMELESS ENSG00000135423.13::ENSG00000111602.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 83 TRUE 40 GLS2 ENSG00000135423.13 protein_coding - - chr12:56470944-56488414:- chr12:56474544:- chr12:56864728-56882198:- chr12:56868328:- TIMELESS ENSG00000111602.12 protein_coding - - chr12:56416363-56449426:- chr12:56434231:- chr12:56810147-56843210:- chr12:56828015:- chr12:56474382 chr12:56446725 NA NA chr12:56868166 chr12:56840509 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none EF-hand_domain(100%),Glutaminase(80%)|Timeless_PAB_domain(100%),Timeless_protein(100%) EF-hand_14(100%),Glutaminase(78%)|TIMELESS(100%),TIMELESS_C(100%) 5 8 3 76 412 ENST00000610413.4 ENST00000553532.6 upstream downstream duplicates(2),mismappers(1),mismatches(1) GGTCACTTGTGAATCAGGCAGTGTCATGGCAGCCACCCTCGCCAACGGTGGGATCTGCCCCATCACAGGCGAGAGTGTGCTGAGTGCTGAAGCAGTGCGCAACACCCTCAGCCTCATGCATTCCTGCGGCATGTATGACTTCTCTGGCCAGTTTGCCTTCCAC|GCCTCATCATTTCTGTCTCCTGTTTCTCCACTTCCTTCTCTaTTGGTTGGTCCACTGATGTATGGACTTGCACATGATGAACTGTGAACTTCTAGCCACATGTAGTGCCCTTGGGTACTTGGAGGGAGACACTTACCATAAGGAACCAGATTGCTTAG___AGAGCGTGAAGGATCTGATCCGCTATTTGAGGCATGAGGATGAGACACGAGATGTGCGGCAGCAGCTGGGGGCAGCCCAGATCCTACAGAGCGACCTTCTGCCCATCCTCACCCAGCACCcCCAGGACAAGCCTCTCTTTGATGCTGTTATCAG___ACTGATGGTGAACTTGACACAACCAGCC VTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFH|assflspvsplpsllvgplmyglahdel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 452 GLS2::TIMELESS ENSG00000135423.13::ENSG00000111602.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 83 TRUE 40 GLS2 ENSG00000135423.13 protein_coding - - chr12:56470944-56488414:- chr12:56474846:- chr12:56864728-56882198:- chr12:56868630:- TIMELESS ENSG00000111602.12 protein_coding - - chr12:56416363-56449426:- chr12:56434231:- chr12:56810147-56843210:- chr12:56828015:- chr12:56474382 chr12:56446725 NA NA chr12:56868166 chr12:56840509 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none EF-hand_domain(100%),Glutaminase(60%)|Timeless_PAB_domain(100%),Timeless_protein(100%) EF-hand_14(100%),Glutaminase(72%)|TIMELESS(100%),TIMELESS_C(100%) 1 2 0 131 412 ENST00000610413.4 ENST00000553532.6 upstream downstream none CGGAATTATGCCATCGGCTATTATCTCAAGGAAAAGAAG___TGCTTTCCTAAGGGGGTGGACATGATGGCTGCCCTTGATCTCTACTTCCAG|GCCTCATCATTTCTGTCTCCTGTTTCTCCACTTCCTTCTCTaTTGGTTGGTCCACTGATGTATGGACTTGCACATGATGAACTGTGAACTTCTAGCCACATGTAGTGCCCTTGGGTACTTGGAGGGAGACACTTACCATAAGGAACCAGATTGCTTAG___AGAGCG RNYAIGYYLKEKKCFPKGVDMMAALDLYFQ|assflspvsplpsllvgplmyglahdel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 454 ABCC4::UGGT2 ENSG00000125257.16::ENSG00000102595.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 84 FALSE NA ABCC4 ENSG00000125257.16 protein_coding - - chr13:95019835-95301475:- chr13:95246975:- chr13:95672089-95953729:- chr13:95899229:- UGGT2 ENSG00000102595.22 protein_coding - - chr13:95801580-96053482:- chr13:95837202:- chr13:96453834-96705736:- chr13:96489456:- chr13:95237898,chr13:95237919 chr13:95854405,chr13:95854420 NA NA chr13:95890152,chr13:95890173 chr13:96506659,chr13:96506674 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none ABC_transporter_transmembrane_region(1%)|Glucosyltransferase_24(26%) ABC_membrane(0%)|Glyco_transf_24(15%),Glyco_transf_8(0%) 0 1 0 15 67 ENST00000643051.1 ENST00000376747.8 upstream downstream none CAGAAGCCTTCTTTAACAAGAGCAATCATAAAGTGTTACTGGAAATCTTATTTAGTTTTGGGAATTTTTACGTTAATTGAG|GATCTCCCCAATAATATGATTTACCAAGTCGCCATTAAGTCTCTTCCTCAAGACTGGCTGTGGTGTGAAACCTGGTGTGATGATGAATCCAAACAAAG QKPSLTRAIIKCYWKSYLVLGIFTLIE|DLPNNMIYQVAIKSLPQDWLWCETWCDDESKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus inexact TRUE Bladder Urothelial Carcinoma,Uterine Carcinosarcoma BLADDER,UTERUS inexact 95813443,95953495 FALSE,FALSE 96454066,96489456 FALSE,TRUE YES,PARTIALLY In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 462 WDR76::PDIA3 ENSG00000092470.12::ENSG00000167004.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 54 FALSE NA FALSE NA WDR76 ENSG00000092470.12 protein_coding + + chr15:43826980-43868412:+ chr15:43836216:+ chr15:44119178-44160610:+ chr15:44128414:+ PDIA3 ENSG00000167004.14 protein_coding + + chr15:43746394-43773279:+ chr15:43756649:+ chr15:44038592-44065477:+ chr15:44048847:+ chr15:43836903,chr15:43836900 chr15:43753866,chr15:43753860 NA NA chr15:44129101,chr15:44129098 chr15:44046064,chr15:44046058 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Thioredoxin(73%),Thioredoxin-like_domain(100%) |Thioredoxin(40%),Thioredoxin_6(100%) 4 1 6 207 3512 ENST00000263795.11 ENST00000687211.1 downstream upstream duplicates(1) CTAAAATAAAGAAAACTTGCAGAAGGATTATACCTCCAAAGATGAAAAACACATCTTCCAAGGCAGAATCCACGCTGCAAAATTCATCCTCAGCTGTTCAT...CGGCAGATGCGATGAATCTCAGTGTTGATGTGGAAAGTAGTCAGGATGGAGACAGTGATGAAGATACCACACCATCCCTG___GATTTTTCGGGATTGTCACCCTACGAAAGGAAGAGACTGAAGAACATATCAGAAAACGCAGACTTTTTTGCTTCTCTTCAGTTGTCTGAG___TCTGCTGCAAGACTCCGTGAAATGATAGAGAAGAGACAGCCTCCTAAATCCAAAAG|GTTGATTGCACTGCCAACACTAACACCTGTAATAAATATGGAGTCAGTGGATATCCAACCCTGAAGATATTTAGAGATGGTGAAGAAGCAGGTGCTTATGATGGACCTAGGACTGCTG___ATGGAATTGTCAGCCACTTGAAGAAGCAGGCAGGACCAGCTTCAGTGCCTCTCAGGACTGAGGAAGAATTTAAGAAATTCATTAGTG ADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKr|LIALPTLTPVINMESVDIQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST no_match 43836216 TRUE 43753824 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 463 ELL2::GLRX ENSG00000118985.16::ENSG00000173221.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 86 TRUE 41 ELL2 ENSG00000118985.16 protein_coding - - chr5:95885098-95961851:- chr5:95943002:- chr5:95220802-95297555:- chr5:95278706:- GLRX ENSG00000173221.14 protein_coding - - chr5:95751319-95822726:- chr5:95789650:- chr5:95087023-95158430:- chr5:95125354:- chr5:95937925,chr5:95937940 chr5:95798759,chr5:95798771 NA NA chr5:95273629,chr5:95273644 chr5:95134463,chr5:95134475 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none RNA_polymerase_II_elongation_factor_ELL__(19%)| ELL(30%)|BTB(100%) 2 0 8 71 5 ENST00000237853.9 ENST00000507605.1 upstream downstream none GGACAACATCACCGTACTGCATGTGAAGCTCACCGAGACGGCGATCCGGGCGCTCGAGACTTACCAGAGCCACAAG___AATTTAATTCCTTTTCGACCTTCAATCCAGTTCCAAGGACTCCACGGG|AAGACACTTCAGTTATCTCCACGGAGATTTATTTGTCCAGATTGTGAAACTCCTTGATCAG___CAGATGAATGTGTGCAATCTCAAGGGAAAAGAATAAGAACCTTCAGCTTTTTAGAGAAGCCACC DNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHG|ktlqlsprrficpdcetp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 464 ELL2::GLRX ENSG00000118985.16::ENSG00000173221.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 86 TRUE 41 ELL2 ENSG00000118985.16 protein_coding - - chr5:95885098-95961851:- chr5:95943002:- chr5:95220802-95297555:- chr5:95278706:- GLRX ENSG00000173221.14 protein_coding - - chr5:95751319-95822726:- chr5:95751460:- chr5:95087023-95158430:- chr5:95087164:- chr5:95937925,chr5:95937940 chr5:95798759,chr5:95798771 NA NA chr5:95273629,chr5:95273644 chr5:95134463,chr5:95134475 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none RNA_polymerase_II_elongation_factor_ELL__(19%)| ELL(30%)| 5 0 2 71 9 ENST00000237853.9 ENST00000508780.5 upstream downstream duplicates(1),mismatches(1) GCGGACGGCTGGGGCAGGACAACATCACCGTACTGCATGTGAAGCTCACCGAGACGGCGATCCGGGCGCTCGAGACTTACCAGAGCCACAAG___AATTTAATTCCTTTTCGACCTTCAATCCAGTTCCAAGGACTCCACGGG|AAATGGAGTATCACTATGTTGCTCAAGCTAGACTCAAACTCCTGGACTCAAGGGATCCTCCCGCCTCAGCCTTCCAAGTCACTGGGATTATAAGTGCATGCCATCCCACGCAGCTACTCTCTTGAATACTCGAGAAAGCCAAGCACTACAATTGTG GRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHG|kwsitmllkldsnswtqgilppqpskslgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 467 ARFGAP3::PACSIN2 ENSG00000242247.11::ENSG00000100266.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 87 TRUE 42 ARFGAP3 ENSG00000242247.11 protein_coding - - chr22:42796502-42858106:- chr22:42840944:- chr22:43192508-43254112:- chr22:43236950:- PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42865456:- chr22:43231418-43411155:- chr22:43261462:- chr22:42840670,chr22:42840672,chr22:42840671 chr22:42866064,chr22:42866063,chr22:42866062 NA NA chr22:43236676,chr22:43236678,chr22:43236677 chr22:43262070,chr22:43262069,chr22:43262068 NA NA sense sense stop-codon CDS/splice-site intron duplication medium none Putative_GTPase_activating_protein_for_Arf(72%)| ArfGap(63%)|ArfGap(100%) 6 2 1 234 9 ENST00000263245.10 unknown upstream downstream duplicates(1),mismatches(1) CGTCGCTCCTGCTGAGGCGGTAGCCGCTTTTCGTCGACTCTTACCGGTTGGCTGGGCCAGCTGCGCCGCGGCTCACAGCTGACGATGGGGGACCCCAGCAAGCAGGACATCTTGACCATCTTCAAGCGCCTCCGCTCGGTGCCCACTAACAAG___ATCTACAGAGTTGGATTCCAACTGGTCATGGTTTCAGTTGCGATGCATGCAAGTCGGAGGAAACGCTAGTGCA|GTGGAATTTCACTCTCGTTGCCCAAGGCTGGAGTGCAATGGCACAATCTCGGCTCCCTGTGCCCCCCACCTCTCAGGTTCAACAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCCACATGTGCTGTTTTCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 43253120 FALSE 43289619 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 468 ARFGAP3::PACSIN2 ENSG00000242247.11::ENSG00000100266.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 87 TRUE 42 ARFGAP3 ENSG00000242247.11 protein_coding - - chr22:42796502-42858106:- chr22:42840944:- chr22:43192508-43254112:- chr22:43236950:- PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42858522:- chr22:43231418-43411155:- chr22:43254528:- chr22:42840670,chr22:42840672,chr22:42840671 chr22:42866064,chr22:42866063,chr22:42866062 NA NA chr22:43236676,chr22:43236678,chr22:43236677 chr22:43262070,chr22:43262069,chr22:43262068 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication low none Putative_GTPase_activating_protein_for_Arf(72%)| ArfGap(63%)|ArfGap(100%) 0 2 0 234 4 ENST00000263245.10 ENST00000507586.1 upstream downstream duplicates(1),same_gene(1) CGCCTCCGCTCGGTGCCCACTAACAAG___ATCTACAGAGTTGGATTCCAACTGGTCATGGTTTCAGTTGCGATGCATGCAAGTCGGAGGAAACGCTAGTGCA|AGACGGGGTTTCACCAT?TTATCCAGTCTGGTCTTGAACTCCTGAGCTCAAGTGATCCTCCCGCCTCAGCCTCCCAAAGTGCTGGGATCACAGGCATGAGCCCCTGAGACTGCAAATAAACCATGCTTTAGAGAAG___GTGTGTTTTGATTGTGGTGCCAAAAATCCCAGCTGGGCAAGCA...TGGAGTGTTCCTTTGCATTGATTGCTCAGGGTCCCACCGGTCACTTGGTGTTCACTTGAGTTTTATTCG___ATCTACAGAGTTGGATTCCAACTGGTCATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 43253120 FALSE 43289619 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 471 DNAH1::SHISA4 ENSG00000114841.18::ENSG00000198892.7 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAH1 ENSG00000114841.18 protein_coding + + chr3:52316319-52400492:+ chr3:52393052:+ chr3:52350335-52434508:+ chr3:52427068:+ SHISA4 ENSG00000198892.7 protein_coding + - chr1:201888680-201892587:+ chr1:201892506:- chr1:201857808-201861715:+ chr1:201861634:- chr3:52393332,chr3:52393333,chr3:52393333 chr1:201892809,chr1:201892808,chr1:201892775 NA NA chr3:52427348,chr3:52427349,chr3:52427349 chr1:201861937,chr1:201861936,chr1:201861903 NA NA sense antisense out-of-frame intron 3'UTR translocation/5'-5' medium none AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(44%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%)| AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),DHC_N2(100%),Dynein_AAA_lid(100%),MT(100%)| 0 4 3 14 50 ENST00000420323.7 unknown downstream downstream duplicates(1) GGTTTCTCAACATCTTCCTCTCGGGCATCGCCAACTCAGAGAGAGCAGGTAGCACCGGCATGCCAGGCTCCTACC|CTCATTGTCTTTAGGAAGCCTTTAGGAAGCCAGGAACAGTCCGCCTTGGTCTGCTTGTGGATGGGGGTGAGGATGGTGCTGTGCTCCGATGCTGGTGCTGGCCCTCCCCTACTTTTGGAATATGGAGTGGGCAACAGTCTGGG...GGAGGGCTACTGCCAGCTGCTGACGGAACCTCCTCCCTCCCCCCACCCCAGCCCAGAGGGGACAAACAGTAGGGCCCCAGCCTTCCTGGCTGGGATCTTGG FLNIFLSGIANSERAgstgmpgsy|phcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 473 ATAD5::SEZ6 ENSG00000176208.9::ENSG00000063015.21 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 88 FALSE NA ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30887372:+ chr17:29158984-29222887:+ chr17:29214390:+ SEZ6 ENSG00000063015.21 protein_coding - - chr17:28954901-29006440:- chr17:28982039:- chr17:27281919-27333458:- chr17:27309057:- chr17:30892745,chr17:30892746 chr17:28993441,chr17:28993440 NA NA chr17:29219763,chr17:29219764 chr17:27320459,chr17:27320458 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)|CUB_domain(100%),Sushi_repeat_(SCR_repeat)(100%) AAA(100%)|CUB(100%),Sushi(100%) 0 1 1 54 3 ENST00000321990.5 ENST00000360295.13 downstream downstream none AAAAGTATCCTTTACTTACAATTCTGGATTAGAAGTGGAGGTGGAGTTTTAGAAGAACGACCATTAACCCTTTATC|GACTCTCTTTAGAGGCCCCAACCGT...CGAGGAGACAGATGGCGAGCTGACAGCAGCCCCCACACCTGAGCAGCCAGAACGAGGCGTCCACTTTGTCACAACAGCCCCCACCTTGAAGCTGCTCAACC...GCCCACCCTAGGCCCAGGGGAGATAGCCAGCACTACACCCCCCAGCAGAGCCTGGACACCAACCCAAGAGGGTCCTGGAGACATGGGAAGGCCGTGGGTTG KSILYLQFWIRSGGGVLEERPLTLY|rLSLEAPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 474 ELL2::RHOBTB3 ENSG00000118985.16::ENSG00000164292.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELL2 ENSG00000118985.16 protein_coding - - chr5:95885098-95961851:- chr5:95943002:- chr5:95220802-95297555:- chr5:95278706:- RHOBTB3 ENSG00000164292.13 protein_coding + - chr5:95713522-95824383:+ chr5:95787298:- chr5:95049226-95160087:+ chr5:95123002:- chr5:95937925,chr5:95937940 chr5:95798759,chr5:95798771 NA NA chr5:95273629,chr5:95273644 chr5:95134463,chr5:95134475 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none RNA_polymerase_II_elongation_factor_ELL__(19%)| ELL(30%)| 1 0 5 71 8 ENST00000237853.9 unknown upstream downstream none CGGACGGCTGGGGCAGGACAACATCACCGTACTGCATGTGAAGCTCACCGAGACGGCGATCCGGGCGCTCGAGACTTACCAGAGCCACAAG___AATTTAATTCCTTTTCGACCTTCAATCCAGTTCCAAGGACTCCACGGG|ATGAATGTGTGCAATCTCAAGGGAAAAGAATAAGAACCTTCAGCTTTTTAGAGAAGCCACCACTACTGTTACGTGATTAACCCAGAGCAGATAACAAAACACCAGGAGGTTAGGACATTGCCTTAAGGGCTGTGACTGAGAAGGAAAAGGGAGGTCACA GRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQFQGLHG|mnvcnlkgke* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 475 SPRYD4::TIMELESS ENSG00000176422.14::ENSG00000111602.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPRYD4 ENSG00000176422.14 protein_coding + - chr12:56468578-56479708:+ chr12:56474846:- chr12:56862362-56873492:+ chr12:56868630:- TIMELESS ENSG00000111602.12 protein_coding - - chr12:56416363-56449426:- chr12:56434231:- chr12:56810147-56843210:- chr12:56828015:- chr12:56474382 chr12:56446725 NA NA chr12:56868166 chr12:56840509 NA NA antisense sense unknown 3'UTR 5'UTR/splice-site deletion/read-through/3'-3' medium none |Timeless_PAB_domain(100%),Timeless_protein(100%) |TIMELESS(100%),TIMELESS_C(100%) 1 0 5 131 412 unknown ENST00000553532.6 upstream downstream none TGGTGCCATTGTTGTCAGCTCCCTGATCAAG___ATGGACTGTAACAAAGCAGAGAAGTTTGATTTT___GTGTTGCAGTATCTCAACAAAATGGCTGGGAATGAATACATGGGTTTCAGCAATGCCAC___ATTCCAGTCAGAGAAGGAAACAGGGGATCGGAATTATGCCATCGGCTATTATCTCAAGGAAAAGAAG___TGCTTTCCTAAGGGGGTGGACATGATGGCTGCCCTTGATCTCTACTTCCAG|GCCTCATCATTTCTG...TGTTTCTCCACTTCCTTCTCTaTTGGTTGGTCCACTGATGTATGGACTTGCACATGATGAACTGTGAACTTCTAGCCACATGTAGTGCCCTTGGGTACTTGGAGGGAGACACTTACCATAAGGAACCAGATTGCTTAG___AGAGCGTGAAGGATCTGATCCGCTATTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 477 TMEM150C::SEC31A ENSG00000249242.8::ENSG00000138674.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM150C ENSG00000249242.8 protein_coding - - chr4:82483170-82562357:- chr4:82561906:- chr4:83404323-83483510:- chr4:83483059:- SEC31A ENSG00000138674.17 protein_coding - - chr4:82818509-82901166:- chr4:82864598:- chr4:83739662-83822319:- chr4:83785751:- chr4:82548887,chr4:82548890 chr4:82866013,chr4:82866013 NA NA chr4:83470040,chr4:83470043 chr4:83787166,chr4:83787166 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Sec23-binding_domain_of_Sec16(100%) |DUF3824(100%),Sec16_C(100%) 0 4 0 14 287 ENST00000449862.7 ENST00000355196.6 upstream downstream none GCCGCCGCCGCCACCGCAGCAGGTCACAGCCCCTCGAGGCGACAGCGGCCCCGCCGCACCAGAGCAG|TTTGGAGGCAAACTGGTTACGTTTGAGAATGTCAGAATGCCTTCTCATCAGGGAGCTGAGCAGCAGCAGCAGCAGCACCATGTGTTCATTAGTCAGGTTGTAACAGAAAAGGAGTTCCTCAGCCGATCAGACCAACTTCAGCAGGCTGTGCAGTCACAAGGATTTATCAATTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 483 BMPR1B::KCNU1 ENSG00000138696.11::ENSG00000215262.8 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 89 TRUE 43 BMPR1B ENSG00000138696.11 protein_coding + + chr4:94757955-95158448:+ chr4:94875900:+ chr4:95679106-96079599:+ chr4:95797051:+ KCNU1 ENSG00000215262.8 protein_coding + + chr8:36784324-36936125:+ chr8:36905708:+ chr8:36641842-36793643:+ chr8:36763226:+ chr4:94916718,chr4:94916716 chr8:36882775,chr8:36882770 NA NA chr4:95837869,chr4:95837867 chr8:36740293,chr8:36740288 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none none none 0 3 0 33 53 ENST00000515059.6 ENST00000399881.8 downstream upstream none GCGG___GGTGGAGTTCAGCCTACTCTTTCTTAGATGTGAAAGGAAAGGAAGATCATTTCATGCCTTGTTGATAAAG|GACTCTTCAACATGATGTAGAACAAGATTCTGACCAGCTTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTTGGACAAGGTGACTCTG___AAACGAACTGGCAAGTCAAAGTATAAGTTTCGGAACCATATTGTAGCATGTGTATTTGGAGATGCC...AGGAGACTCCAGGTTACACAAATGGACATAATGAGAAATCAAACTGCCGAAAAGTCCCTATCCTTACTGAACTGA___AAAATCCTTCCAACATTCACTTTATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bone morphogenetic protein receptor type-1B TKL STKR STKR1 O00238 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 484 BMPR1B::KCNU1 ENSG00000138696.11::ENSG00000215262.8 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 89 TRUE 43 BMPR1B ENSG00000138696.11 protein_coding + + chr4:94757955-95158448:+ chr4:94899050:+ chr4:95679106-96079599:+ chr4:95820201:+ KCNU1 ENSG00000215262.8 protein_coding + + chr8:36784324-36936125:+ chr8:36905708:+ chr8:36641842-36793643:+ chr8:36763226:+ chr4:94916718,chr4:94916716 chr8:36882775,chr8:36882770 NA NA chr4:95837869,chr4:95837867 chr8:36740293,chr8:36740288 NA NA sense sense unknown intron CDS/splice-site translocation medium none none none 0 1 1 6 53 ENST00000515059.6 ENST00000399881.8 downstream upstream none CTTTCTTAGATGTGAAAGGAAAGGAAGATCATTTCATGCCTTGTTGATAAAG___TTCTGGAAGACCAAAGTCCAAAATCGTTGTCCCTGAGTTGGAATCAAGGTGTCAGCAGGGCTGTGCAACCCCTGGATGTTCTAGGAG|GACTCTTCAACATGATGTAGAACAAGATTCTGACCAGCTTGATAGCAGTGGGATGTTTCACTGGTGCAAACCAACCTCTTTGGACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bone morphogenetic protein receptor type-1B TKL STKR STKR1 O00238 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 486 ITM2B::MTUS2 ENSG00000136156.15::ENSG00000132938.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITM2B ENSG00000136156.15 protein_coding + + chr13:48232612-48270357:+ chr13:48261321:+ chr13:48806748-48844493:+ chr13:48835457:+ MTUS2 ENSG00000132938.22 protein_coding + - chr13:28820339-29505947:+ chr13:29300941:- chr13:29394476-30080084:+ chr13:29875078:- chr13:48265011 chr13:29309463 NA NA chr13:48839147 chr13:29883600 NA NA sense antisense unknown 3'UTR/splice-site intron inversion/3'-3' medium none BRICHOS_domain(100%)| BRICHOS(100%)| 2 0 0 296 0 ENST00000647800.2 unknown downstream downstream none AACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAACATCAAG___GCTGGAACCTATTTGCCTCAGTCCTATCTGATTCATGAGCACAT...CGACTGTGTCATGACAAGGAAACTTACAAACTGCAACGCAGAGAAACTATTAAAG___GTATTCAGAAACGTGAAGCCAGCAATTGTTTCGCAATTCGGCATTT...CCACCCTTTACATTTTGTGCAGTGATTATTTTTTAAAGTCTTCTTTCAT|TGTCTTGATCTTGGATGTTCCAGCCTCCAGAACTGTGAAAAATAAATGTTCGTTGTTTATAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 490 ENSG00000285216::HULC ENSG00000285216.1::ENSG00000285219.4 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 91 TRUE 44 ENSG00000285216 ENSG00000285216.1 lncRNA + + chr6:8158162-8760447:+ chr6:8307560:+ chr6:8158395-8760680:+ chr6:8307793:+ HULC ENSG00000285219.4 lncRNA + + chr6:8435568-9294133:+ chr6:8784180:+ chr6:8435801-9294366:+ chr6:8784413:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion medium none none none 1 0 1 20 20 ENST00000644718.1 ENST00000642534.1 downstream upstream mismatches(1) GACCCCTGTTGCCTAGCAACTGAGAAGCTCAGCCTCAACTCCGGGTGGGGGAGATGATGGAGAAAG___GTACTGCATTTTGATAAATTGAAGGTTTGTGGAACGCTGCATTGAGCAAGTCTATTGGTACCATTTTCCAACAGCATGTGCTCACTTCATGTCTCTGTGCCACATTTG|TTAACCAACAGGACACAGCCCTGGTGATGGCTTTCTG...AGCTCTAAAACTGCGGTGTGGAAAACATTCGGCAGCCTCAAAGAGCGGTCTTGTTGACCCCAACTATATCATTTTTCATCAAAATCATTCTTG___TAAAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 491 ENSG00000285216::HULC ENSG00000285216.1::ENSG00000285219.4 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 91 TRUE 44 ENSG00000285216 ENSG00000285216.1 lncRNA + + chr6:8158162-8760447:+ chr6:8307560:+ chr6:8158395-8760680:+ chr6:8307793:+ HULC ENSG00000285219.4 lncRNA + + chr6:8435568-9294133:+ chr6:8784191:+ chr6:8435801-9294366:+ chr6:8784424:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion medium none none none 0 1 1 20 15 ENST00000644718.1 ENST00000643036.1 downstream upstream mismatches(1) GACCCCTGTTGCCTAGCAACTGAGAAGCTCAGCCTCAACTCCGGGTGGGGGAGATGATGGAGAAAG___GTACTGCATTTTGATAAATTGAAGGTTTGTGGAAC...CTCACTTCATGTCTCTGTGCCACATTTG|GACACAGCCCTGGTGATGGCTTTCTGAGGATGACACGATGGAGGCTTCTCCAATAGCTCTAAAACTGCGGTGTGGAAAACATTCGGCAGCCTCAAAGAGCGGTCTTGTTGACCCCAACTATATCATTTTTCATCAAAATCATTCTTG___TAAAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 492 ENSG00000285216::HULC ENSG00000285216.1::ENSG00000285219.4 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 91 TRUE 44 ENSG00000285216 ENSG00000285216.1 lncRNA + + chr6:8158162-8760447:+ chr6:8307560:+ chr6:8158395-8760680:+ chr6:8307793:+ HULC ENSG00000285219.4 lncRNA + + chr6:8435568-9294133:+ chr6:8558585:+ chr6:8435801-9294366:+ chr6:8558818:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion/read-through low none none none 0 0 0 20 13 ENST00000644718.1 ENST00000645925.1 downstream upstream read_through(2) AAG___GTTGAAGACCTGAAAACTGTGACCCCTGTTGCCTAGCAACTGAGAAGCTCAGCCTCAACTCCGGGTGGGGGAGATGATGGAGAAAG___GTAC...TGCATTGAGCAAGTCTATTGGTACCATTTTCCAACAGCATGTGCTCACTTCATGTCTCTGTGCCACATTTG|GTGATGTCATTGAACTCTTAAGTGCAAGATGAAACAAGTCTTTCTGGGGTTCTAAGTAG___GACACAGCCCTGGTGATGGCTTTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 508 PUS10::REL-DT ENSG00000162927.14::ENSG00000228414.8 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PUS10 ENSG00000162927.14 protein_coding - - chr2:60940222-61018259:- chr2:60945009:- chr2:61167357-61245394:- chr2:61172144:- REL-DT ENSG00000228414.8 lncRNA - - chr2:60823069-60881393:- chr2:60825285:- chr2:61050204-61108528:- chr2:61052420:- chr2:60944815,chr2:60944822 chr2:60829079,chr2:60829083 NA NA chr2:61171950,chr2:61171957 chr2:61056214,chr2:61056218 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 1 2 0 8 3 ENST00000316752.11 ENST00000439412.6 upstream downstream none CAGGCTGGCAC___CTACATTAAAGAGTTTGTACATGGAGACTTCGGGAGAACCAAGCCAAACATTGGGTCCCTGATGAATGTGACTGCAGACATTCTGGAGCTGGATGTTGAG|CTTTCTACCACCCTCGTGCTTTTGGGAGGGCCTGATTCAGATGAAGAGTCTCCTGAGAGCATGGATTGTCTCAGATGAAGAGTCTCCTGAGAGCATGAACTGTCTCAGGTAT...AAtTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACTCTTGTTGCCCACTCTTTTTACTCCCAGG QAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVE|lsttlvllggpdsdeespesmdclr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 515 NOS2::SSH2 ENSG00000007171.19::ENSG00000141298.19 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOS2 ENSG00000007171.19 protein_coding - - chr17:27756766-27800529:- chr17:27793588:- chr17:26083792-26127555:- chr17:26120614:- SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29703062:- chr17:27952956-28257294:- chr17:28030080:- chr17:27790107,chr17:27790110 chr17:29704038,chr17:29704038 NA NA chr17:26117133,chr17:26117136 chr17:28031056,chr17:28031056 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |DEK_C_terminal_domain(100%),Dual_specificity_phosphatase__catalytic_domain(100%) |DEK_C(100%),DSPc(100%) 0 1 1 1 88 ENST00000646938.1 ENST00000540801.6 upstream downstream none CGAGGGGCTGGGCGCGGCGTGCGAGGCCGCCGGGCCCCGGCTGTGCAGGCTGCTCTGCAGGATCCTCCGGCCGAAGCCTGACTGCTGCCCGCGCAGAGCCAG|CATCAGCGAGAGCTTTCTAACTGTCAAAGGTGCTGCCCTTTTTCTACCACGGGGAAATGGCTCATCCACACCAAGAATCAGCCACAGACGGAACAAGCATGCAG___GCG EGLGAACEAAGPRLCRLLCRILRPKPDCCPRRAs|ISESFLTVKGAALFLPRGNGSSTPRISHRRNKHAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 518 FARS2::LYRM4 ENSG00000145982.13::ENSG00000214113.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FARS2 ENSG00000145982.13 protein_coding + + chr6:5261044-5829192:+ chr6:5261660:+ chr6:5261277-5829425:+ chr6:5261893:+ LYRM4 ENSG00000214113.11 protein_coding - + chr6:5103629-5260950:- chr6:5253524:+ chr6:5103863-5261183:- chr6:5253757:+ chr6:5304127,chr6:5304125 chr6:5234800,chr6:5234795 NA NA chr6:5304360,chr6:5304358 chr6:5235033,chr6:5235028 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' low none none none 0 2 0 218 5 ENST00000648580.1 unknown downstream upstream none GCGAACGAGCCTGCCGTACTTCTGATTTTGAAACACCTGGGTCTGGGCTTCCCGGGCGAGCGGTGG|CTCAAAATTGGTCAAAAAGCTGCAGCGACAACTTGCGACAACTCATTTGGCCTAGGAACTGCTAACAAAcGTACAGTGCTGTGGTGGTTCAAGAAGTTTTGCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 521 NHEJ1::ATG9A ENSG00000187736.14::ENSG00000198925.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NHEJ1 ENSG00000187736.14 protein_coding - - chr2:219069355-219160869:- chr2:219146680:- chr2:219934077-220025591:- chr2:220011402:- ATG9A ENSG00000198925.12 protein_coding - - chr2:219219380-219229717:- chr2:219225572:- chr2:220084102-220094439:- chr2:220090294:- chr2:219109324,chr2:219109327 chr2:219226030,chr2:219226030 NA NA chr2:219974046,chr2:219974049 chr2:220090752,chr2:220090752 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none XLF-Cernunnos__XRcc4-like_factor__NHEJ_component(100%)|Autophagy_protein_ATG9(92%) XLF(100%)|ATG9(46%) 0 2 0 42 188 ENST00000698174.1 ENST00000396761.6 upstream downstream none GGGGCTACGCTGATTCGAG___ATCGATTGAAGACAGAACCATTTGAAGAAAATTCCTTCTTGGAACAATTTATGATAGAG|GCAGTTCCTCTTTGTGGTTGCCTTCACTACCTTCCTGGTCAGCTGCGTGGACTATGACATCCTATTTGCCAACAAGATGGTGAACCACAGTCTTCACCCTACTGAACCCGTCAAGGTCACTCTGCCAGACGCCTTT GATLIRDRLKTEPFEENSFLEQFMIE|avplcgclhylpgqlrgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 522 ENSG00000280537::ATG9A ENSG00000280537.2::ENSG00000198925.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000280537 ENSG00000280537.2 protein_coding - - chr2:219075329-219170827:- chr2:219146680:- chr2:219940051-220035549:- chr2:220011402:- ATG9A ENSG00000198925.12 protein_coding - - chr2:219219380-219229717:- chr2:219225572:- chr2:220084102-220094439:- chr2:220090294:- chr2:219109324,chr2:219109327 chr2:219226030,chr2:219226030 NA NA chr2:219974046,chr2:219974049 chr2:220090752,chr2:220090752 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication low none |Autophagy_protein_ATG9(92%) XLF(100%),Xan_ur_permease(100%)|ATG9(46%) 0 2 0 42 188 ENST00000498327.5 ENST00000396761.6 upstream downstream none GGGGCTACGCTGATTCGAG___ATCGATTGAAGACAGAACCATTTGAAGAAAATTCCTTCTTGGAACAATTTATGATAGAG|GCAGTTCCTCTTTGTGGTTGCCTTCACTACCTTCCTGGTCAGCTGCGTGGACTATGACATCCTATTTGCCAACAAGATGGTGAACCACAGTCTTCACCCTACTGAACCCGTCAAGGTCACTCTGCCAGACGCCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 523 SNX29::RSL1D1-DT ENSG00000048471.14::ENSG00000263307.2 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX29 ENSG00000048471.14 protein_coding + + chr16:11976734-12574287:+ chr16:12003043:+ chr16:12070591-12668144:+ chr16:12096900:+ RSL1D1-DT ENSG00000263307.2 lncRNA + + chr16:11851622-11907054:+ chr16:11895489:+ chr16:11945479-12000911:+ chr16:11989346:+ chr16:12014575,chr16:12014576 chr16:11869095,chr16:11869093 NA NA chr16:12108432,chr16:12108433 chr16:11962952,chr16:11962950 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 1 1 0 29 13 ENST00000566228.6 ENST00000574364.2 downstream upstream none GAGCG___GATCACAGAACAATGACAAAAGACAATTTCTGCTGGAGCGACTGCTGGATGCAGTGAAACAG___TGCCAGATCCGCTTTGGAGGGAGAAAGGAGATTGCCTCGGATTCCGACAGCAG|ATTACTCCGAAAGCACAGCGGCAACAGACTATAA...CCCAAGAGAAGTTTtCAAGAGCAAAAGCAGCTGAAGAACTGTGAACTAGATTCAGGTGCTTTTCCTTTCACTTACAGCAAATGAG___CAACCTGGCAAGCATC SGSQNNDKRQFLLERLLDAVKQCQIRFGGRKEIASDSDSr|llrkhsgnrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RUN domain containing 2A 2 PMBL, Hodgkin lymphoma leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 538 KPNA2::DHX40 ENSG00000182481.10::ENSG00000108406.10 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 56 FALSE NA FALSE NA KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68035840:+ chr17:66031752-66043480:+ chr17:66031956:+ DHX40 ENSG00000108406.10 protein_coding + + chr17:59565558-59608345:+ chr17:59602522:+ chr17:57642919-57685706:+ chr17:57679883:+ chr17:68036058,chr17:68036058 chr17:59601485,chr17:59601482 NA NA chr17:66032174,chr17:66032174 chr17:57678846,chr17:57678843 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) |OB_NTP_bind(100%) 72 301 197 1972 1554 ENST00000676902.1 ENST00000251241.9 downstream upstream duplicates(145),mismatches(6) AGCTGAGTCGAGGTGGACCCTTTGAACGCAGTCGCCCcACAGCCGCTGATTCCCCCCGCATCGCCTCCCGTGGAAGCCCAGGCCCGCTTCGCAG|CAAAGTGATTTCCCAAAAGAGACCTTTGAAGGCCCTAAACATGAAGTACTACGAAGATGTCTTTGTGCGGGCTATTTCAAAAATGTAGCTCGAAG___ATCTGTTGGGAGAACGTTTTGCACAATGGATGGTCGTGGAAGCCCAGTTCACATTCATCCTTCCTCAGCA___CTTCATGAACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 545 NPLOC4::RPTOR ENSG00000182446.15::ENSG00000141564.16 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81622166:- chr17:79523913-79615495:- chr17:79589192:- RPTOR ENSG00000141564.16 protein_coding + - chr17:80544819-80966371:+ chr17:80862825:- chr17:78518619-78940171:+ chr17:78836625:- chr17:81615785,chr17:81615790 chr17:80863056,chr17:80863058 NA NA chr17:79582811,chr17:79582816 chr17:78836856,chr17:78836858 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Nuclear_pore_localisation_protein_NPL4(88%)| Tetraspanin(100%),UN_NPL4(62%)| 40 36 71 425 71 ENST00000331134.11 unknown upstream downstream duplicates(13),mismatches(9) CTGCGAGGCCCTTGGGGCGGCAGGCGGCGGCGGCCCGGGGCTCGAGCCCGGAGGCAGGAGCAGCCGCCATGGCCGAGAGCATC___ATAATTCGTGTCCAGTCCCCaGATGGAGTGAAGCGGATCACAGCAACAAAGAGAGAAACAGCAGCAACATTTTTGAAAAAG___GTTGCAAAGGAGTTTGGCTTCCAAAATAATGGCTTCTCGGTTTACATCAATAGAAACAAGACtGGAGAGATAACAGCCTCCTCCAACAAATCCCTCAACTTGCTAAAAATCAA|GTGGACCCGTCTGTACACCATGTGCACCCCGATCTGCACAATGGCAAGCCCCAGGAGTCACAGGGACGGCTGAGGGCTGCAGGAGGCACTCATCATGTGGGGGCGGAGCCCCGGAGGACCACCAGCAACACGAGGAGGGGGCGGAGCAGACATCATGGTGGGCGGAGCCCCGGAGGACCACCAGCAACACGAGGAGGGGGCGGAGCAGACATCATGGTGGGCGGAGCTCCAGAGGACCACCAGCAACACGAGGGGGCGGAGCAGACATCATGGTGGGCGGAGCTTCGGAG MAESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSNKSLNLLKIk|wtrlytmctpictmasprshrdg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 546 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 58 TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75784984:+ chr17:73780887-73821880:+ chr17:73781065:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73227264:- chr17:71203492-71232892:- chr17:71223403:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Unkempt_Zinc_finger_domain_1_(Znf1)(4%)|Family_104(99%) zf_CCCH_5(0%)|FAM104(78%) 19 23 89 407 443 ENST00000589666.6 ENST00000403627.7 downstream downstream duplicates(20),low_entropy(12),mismatches(6) CGGCGAAGAGGCAGGAAGACAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACAC|GAAAAGGAGAAGGAATGGCAACGAAGAAGACAACCATCTTCCCCCCCAGACCAAAAGAAGTAGCAGAAACCCTGTCTTTCAGGATTCCTGGGACACAGAG___TCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAAcAGCCCGGACAGGGCCAGCGGGCCGGAAGGCAGCTTGAGCCAGACCATGGCCGGATCCAGCCCTAACACGCCTCAGCCCGTGCCCGAGCAGTCCGCGCTGTGCCAAGGCCTCTACTTCCAC MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYt|KRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTESSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 547 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75784984:+ chr17:73780887-73821880:+ chr17:73781065:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73209768:- chr17:71203492-71232892:- chr17:71205907:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Unkempt_Zinc_finger_domain_1_(Znf1)(4%)|Family_104(58%) zf_CCCH_5(0%)|FAM104(1%) 3 4 46 407 597 ENST00000589666.6 ENST00000405159.8 downstream downstream duplicates(6),low_entropy(2),mismatches(3) CGGCGAAGAGGCAGGAAGACAAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCAGCACTACAC|TCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAAcAGCCCGGACAGGGCCAGCGGGCCGGAAGGCAGCTTGAGCCAGACCATGGCCGGATCCAGCCCTAACACGCCTCAGCCCGTGCCCGAGCAGTCCGCGCTGTGCCAAGGCCTCTACTTCCACATCAACCAGACCCTGAGGGAGGCCCACTTCCACAGCCTACAGCACCGAGGGCGGCCTCTGACATGATGTGCCGGCAGTTTCTTGCCTTCTGTGAAGGGACAGCGCTGTGCAGATTTGATATTTCAACT MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYt|lqavtvvgaaaaaaaastartgpagrkaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 548 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75792478:+ chr17:73780887-73821880:+ chr17:73788559:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73227264:- chr17:71203492-71232892:- chr17:71223403:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site inversion medium none Unkempt_Zinc_finger_domain_1_(Znf1)(4%)|Family_104(99%) zf_CCCH_5(30%)|FAM104(78%) 2 1 94 149 443 ENST00000587501.1 ENST00000403627.7 downstream downstream duplicates(14),mismatches(5) AAGACCATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGgTTCCTCGGCcCCCCCGGCCGCTACCGCTCAGGTGCTGCAGGCACAGCCCGAGAAACCGCA...CTGGACAACTCTGAGAGCAACTTAGAGAAATCCATCTTGGGCACACTCTATAAAGGAGCTCCTTCTCTGCAAATAGCACCCCAGATAAGTGCACAAAAGCA...GGTTGATACTAAAGGAGGTTTTCCCACTATCCGTATGCATCTTCTCTGTTTTGAGATTGCAACTATGGACAGTTATGGCTAATCCTAGTAGATTGTCTTCCCTTTTAACATCTTGGATGAATTTGGGTCACACTAATTGTTATGTGAAGATGGATGTTGAAT|GAAAAGGAGAAGGAATGGCAACGAAGAAGACAACCATCTTCCCCCCCAGACCAAAAGAAGTAGCAGAAACCCTGTCTTTCAGGATTCCTGGGACACAGAG___TCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAAcAGCCCGGACAGGGCCAGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 549 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75792019:+ chr17:73780887-73821880:+ chr17:73788100:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73227264:- chr17:71203492-71232892:- chr17:71223403:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion medium none Unkempt_Zinc_finger_domain_1_(Znf1)(4%)|Family_104(99%) zf_CCCH_5(28%)|FAM104(78%) 0 1 92 144 443 ENST00000586527.1 ENST00000403627.7 downstream downstream duplicates(13),mismatches(5) GGCAGCTGGACAACTCTGAGAGCAACTTAGAGAAATCCATCTTGGGCACACTCTATAAAGGAGCTCCTTCTCTGCAAATAGCACCCCAGATAAGTGCACAAAAGCAAGATACCCTCGTGGACCTACACGTCCTCCCGCTTTTCAACACCCTGATGCCTGAAG|GAAAAGGAGAAGGAATGGCAACGAAGAAGACAACCATCTTCCCCCCCAGACCAAAAGAAGTAGCAGAAACCCTGTCTTTCAGGATTCCTGGGACACAGAG___TCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAAcAGCCCGGACAGGGCCAGCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 551 KANSL1::RNF213 ENSG00000120071.15::ENSG00000173821.20 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KANSL1 ENSG00000120071.15 protein_coding - - chr17:46029916-46225389:- chr17:46223671:- chr17:44107282-44302755:- chr17:44301037:- RNF213 ENSG00000173821.20 protein_coding + - chr17:80260852-80398794:+ chr17:80266274:- chr17:78234651-78372594:+ chr17:78240073:- chr17:46202378,chr17:46202378,chr17:46202381,chr17:46202380 chr17:80269414,chr17:80269404,chr17:80269414,chr17:80269690 NA NA chr17:44279744,chr17:44279744,chr17:44279747,chr17:44279746 chr17:78243213,chr17:78243203,chr17:78243213,chr17:78243489 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none none none 18 38 72 183 388 ENST00000574590.6 unknown upstream downstream duplicates(18),mismappers(26),mismatches(15),multimappers(14) CTTGGTTGAACCGTGCAG___ATACCTTCTCGAAACAAAAGATTTTCCTACCTGCTTATACTTGGTAACCGAGGGAATTACTAAGACTTCTTGCTCATTTCTGAGTATTGTCTTTATATCCTGACACTATGAATGCTACTTGGATGCCTCTTAAG|AGATGGGGCTCCACCATGTTGCTTAGGCTGCTCTCGAACTCCTGGGCTCAAGCGATCTACTCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACCACGCCTAGTAAGGTGGGCCACCTTTTGATCCATGTTTCAGCCAACCAAACAAAGACTCAGAGGCCTTCCTAACTCTACCAGCTGCAACATGAAATGCATAATCTCTGCTAGTGGGCCCACACTACTAAACTCAACCTGACTCAACTTTATATCATTTGGAACTCAATGTCTCCAGCCTGGCCATGGGCTTCCCATGTCCCCATCCCAACTTGAAGGATCCCTTCCTTTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 552 EME1::KCNJ2 ENSG00000154920.15::ENSG00000123700.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EME1 ENSG00000154920.15 protein_coding + + chr17:50373220-50381483:+ chr17:50376193:+ chr17:48450581-48458844:+ chr17:48453554:+ KCNJ2 ENSG00000123700.5 protein_coding + + chr17:70168673-70180044:+ chr17:70174824:+ chr17:68164814-68176185:+ chr17:68170965:+ chr17:50378577,chr17:50378572 chr17:70170543,chr17:70170535 NA NA chr17:48455938,chr17:48455933 chr17:68166684,chr17:68166676 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none ERCC4_domain(17%)|Inward_rectifier_potassium_channel_C-terminal_domain(100%),Inward_rectifier_potassium_channel_N-terminal(100%),Inward_rectifier_potassium_channel_transmembrane_domain(100%) ERCC4(2%)|IRK(100%),IRK_C(100%),IRK_N(100%) 20 34 73 155 117 ENST00000338165.9 ENST00000243457.4 downstream upstream duplicates(6),mismatches(3) CCAGAGGAATGCTTAAAACACATCATTGTAGTGCTGGATCCAG___...GTGCTCTTACAGATGGAAGGTGGGGGCCAGCTCCTAGGAGCACTGCAGACCATGGAGTGCCGCTGTGTGATTGAGGCGCAGGCTGTGCCTTGCAGTGTCACTTGGAGGAGAAGGGCTGGGCCGTCTGAG|GACATGTTCTCTGGATGTCAGCTGAGTCATTAAAGTAACTCTGCATGTCAGTAGACAGACCTTGGTAGAACCACAAGGCTCCCAGAGACACCCATCTCTCCTCATTTTTTTGGTGTGTGTGTCTTCACCGAACATTCAAAACTGTTTCTCCAAAGCGTTTTGCAAAAACTCAGACTGTTTTCCAAAGCAGAAGCACTGGAGTCCCCAGCAGAAGCGATGGGCAGTGTGCGAACCAACCGCTACAGCATCGTCTCTTCAGAAGAAGACGGTATGAAGTTGGCCACCATGGCAGTTGCAAATGGC VLLQMEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGPSE|dmfsgcqlsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 553 NHERF1::TMEM105 ENSG00000109062.12::ENSG00000185332.8 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 98 TRUE 46 NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74762173:+ chr17:72744767-72765492:+ chr17:72758312:+ TMEM105 ENSG00000185332.8 lncRNA - - chr17:81311270-81330674:- chr17:81313919:- chr17:79285070-79304474:- chr17:79287719:- chr17:74763100 chr17:81314140 NA NA chr17:72759239 chr17:79287940 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none PDZ_domain(77%)| EBP50_C(66%),PDZ(19%),PDZ_2(100%),PDZ_6(11%)| 14 20 87 1912 137 ENST00000262613.10 ENST00000650606.1 downstream downstream duplicates(9),mismatches(6) ACGCCGTGCGCCTGCTGGTGGTCGACCCCGAGACGGACGAGCAGCTGCAGAAGCTCGGCGTCCAGGTCCGAGAGGAGCTGCTGCGCGCCCAGGAAGCGCCGGGGCAGGCCGAGCCGCCGGCCGCCGCCGAGGTGCAGGGGGCTGGCAACGAAAATGAGCCTCGCGAGGCCGACAAGAGCCACCCGGAGCAG___CGCGAGCTTCGGCCTCGGCTCTGTACCATGAAGAAGGGCCCCAGTGGCTATGGCTTCAACCTGCACAGCGACAAGTCCAAGCCAGGCCAGTTCATCCGGTCAGTGGACCCAGACTCCCCGGCTGAGGCTTCAGGGCTCCGGGCCCAGGATCGCATTGTGGAG|CCTGGCTCCGGCCCCCCACCCTGCTGCAGGGCCCGAGGACGTCTCCCCAGGGGTCCCCACCTCGGTCTCCTTGGGGGGACTGTGCTGAGCCCAGCTGCCTCTGTGAGATGAAGATAAGAAGGCGAAGACATGAAGGGCCTGCCTGGGGGCAGTCTGcCTTTCTTGCAGGGGGGCTGCACCTGGTTCCCTCCTCCCTCTCGCTGGCAGCCTGCGGGGTGGTGAG...___CTGGCAAGCTCTGATCTTAC AVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQAEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVE|pgsgpppccrargrlprgphlgllggtvlspaasvr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 554 NHERF1::TMEM105 ENSG00000109062.12::ENSG00000185332.8 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 98 TRUE 46 NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74762173:+ chr17:72744767-72765492:+ chr17:72758312:+ TMEM105 ENSG00000185332.8 lncRNA - - chr17:81311270-81330674:- chr17:81313985:- chr17:79285070-79304474:- chr17:79287785:- chr17:74763100 chr17:81314140 NA NA chr17:72759239 chr17:79287940 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none PDZ_domain(77%)| EBP50_C(66%),PDZ(19%),PDZ_2(100%),PDZ_6(11%)| 9 6 91 1912 55 ENST00000262613.10 ENST00000650606.1 downstream downstream duplicates(6),mismatches(5) GCCGAGCCGCCGGCCGCCGCCGAGGTGCAGGGGGCTGGCAACGAAAATGAGCCTCGCGAGGCCGACAAGAGCCACCCGGAGCAG___CGCGAGCTTCGGCCTCGGCTCTGTACCATGAAGAAGGGCCCCAGTGGCTATGGCTTCAACCTGCACAGCGACAAGTCCAAGCCAGGCCAGTTCATCCGGTCAGTGGACCCAGACTCCCCGGCTGAGGCTTCAGGGCTCCGGGCCCAGGATCGCATTGTGGAG|GAGCTTTCAGGGCAGGAAATGTGATCGGGCAGCTGATTTATCTCCTTACCTGGTCTTTGTTCACAGCCTGGCTCCGGCCCCCCACCCTGCTGCAGGGCCCGAGGACGTCTCCCCAGGGGTCCCCACCTCGGTCTCCTTGGGGGGACTGTGCTGAGCCCAGCTGCCTCTGTGAGATGAAGATAAGAAGGCGAAGACATGAAGGGCCTGCCTGGGGGCAGTCTGcCTTTCTTGCAGGGGGGCTGCACCTGGTTCCCTCCTCCCTCTCGCTGGCAGCCTGCGG AEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVE|elsgqem* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 565 ACACA::ERC1 ENSG00000278540.5::ENSG00000082805.21 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE FALSE TRUE 60 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37330173:- chr17:35441927-35766927:- chr17:35687113:- ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |FIP_domain_(100%) DUF4711(100%)|RBD-FIP(100%) 16 15 21 312 101 ENST00000614428.4 ENST00000543086.7 upstream upstream duplicates(8),mismatches(3) AGTTCCTCCACGCAGGGGCTCCGGAATCGCCCGACCGCACACGTTGCCACCCTGAG___GTCTTTTTGGAAGTGGATATCTACTCAGACAGTAAGAATTATAAGAG___...TGTAAGAGCTCATTTTGGAGGAATAATGGATGAACCATCTCCCTTGGCCCAACCTCTGGAGCTGAACCAGCACTCTCGATTCATAATAGGTTCTGTGTCTGAAGATAACTCAGAGGATGAGATCAGCAACCTGGTGAAGTTGGACCTACTGGAGGAGAAGGAGGGCTCCTTGTCACCTGCTTCTGTTGGCTCAGATACACTCTCTGATTTGGGGATCTCTAGCCTACAGGATGGCTTGGCCTTGCACATAAG|ATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAG___CTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCCTGGAAGAGTCCTCTTGACCCTGC MDEPSPLAQPLELNQHSRFIIGSVSEDNSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISSLQDGLALHIr|sssps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 581 ENSG00000285897::AANAT ENSG00000285897.1::ENSG00000129673.10 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000285897 ENSG00000285897.1 protein_coding - + chr17:58345206-58417595:- chr17:58417174:+ chr17:56422567-56494956:- chr17:56494535:+ AANAT ENSG00000129673.10 protein_coding + + chr17:76453351-76470117:+ chr17:76465883:+ chr17:74449433-74466199:+ chr17:74461965:+ NA NA NA NA NA NA NA NA antisense sense unknown 5'UTR 5'UTR/splice-site deletion/3'-3' high none |Acetyltransferase_(GNAT)_family(100%) |Acetyltransf_1(100%),Acetyltransf_10(100%) 2 4 15 1301 71 unknown ENST00000250615.7 downstream upstream duplicates(2),low_entropy(1),mismappers(1),mismatches(2) TCCTGATTGGGCAGAGAAGAGGATATTTTCAGCCCACATCTGCTGCAG___ATCCTGCTCAAAAAAGGTTTCAACTGCTTAACCAAGTACAGCTCATTCTTCCACCTTCTTACTCTGCAACCAAACCAAGTGCCCCATACTACAG|GGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGAGTCACTACAGCCTCGACCTCTCCGGCTCAAGCCATCCTCCCGTCTCTGTCTCCCAAAGTGCTGGGATTACAGCGGTGAGCCACTGTGCCTGGCTTACTGCCTCATCTTGTTCCCTGAGGTTCTAGACCTCTAGGGTGTTGTCCGGAAAGAACAGGGCCATGTGGAAGTCAGCAAAGAGAGAGGCCGATTGAACAGCAGGCTCTTCTCAGGCATCGCCAAGTGACTGAT...GACCACCCCACCAACCAAGCCCAAGGAGGTCTCTGGTCGGTCCTGAGAGGTCTGTTGAGGGTCCCTTCTAGCAGGCAGGTGGGCCTCAGAGTGCAGAGGGGCCCTGGGAGAAGGGGACCCAGAGACAGG...TGGGATCCCCGAGTCCCCGAGCTGTCAGCGGCGCCACACACTCCCTGCCAGTGAGTTTCGCTGCCTCACCCCGGAGGACGCTGTCAGCGCCTTTGAGATCGAGCGTGAAG___CCTTCATCTCCGTCTTGGGCGTCTGCCCCCTGTACCTGGATGAGATCCGGCACTTCCTGACCCTATGTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 582 ASPH::LINC02842 ENSG00000198363.18::ENSG00000254119.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASPH ENSG00000198363.18 protein_coding - - chr8:61500556-61714640:- chr8:61576772:- chr8:62413115-62627199:- chr8:62489331:- LINC02842 ENSG00000254119.5 lncRNA + - chr8:61785047-61944180:+ chr8:61875595:- chr8:62697606-62856739:+ chr8:62788154:- chr8:61571586,chr8:61571590 chr8:61881285,chr8:61881286 NA NA chr8:62484145,chr8:62484149 chr8:62793844,chr8:62793845 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none Aspartyl_beta-hydroxylase_N-terminal_region(100%),Tetratricopeptide_repeat(88%)| Asp-B-Hydro_N(100%),TPR_16(43%),TPR_6(100%)| 9 1 10 218 10 ENST00000524173.5 unknown upstream downstream mismatches(1) GGAAAATCCAG___ATTCCAGTGAACCAGTAGTAGAAGATGAAAGATTGCACCATGATACAG___ATGATGTAACATACCAAGTCTATGAGGAACAAG___TATATGAACCTCTAGAAAATGAAGGGATAGAAATCACAG___AAGTAACTGCTCCCCCTGAGGATAATCCTGTAGAAGATTCACAGGTAATTGTAGAAG___AAGTAAGCATTTTTCCTGTGGAAGAACAGCAGGAAGTACCACCAG___TTAAGAAAAAGAAGCCTAAACTTTTAAATAAATTTGATAAGACTATTAAAGCTGAACTTGATGCTGCAGAAAAACTCCGTAAAAGG___GGAAAAATTGAGGAAGCAGTGAATGCATTTAAAGAACTAGTACGCAAATACCCTCAGAGTCCACGAGCAAGATATGGGAAGGCGCAG|GATTAGAGGCCTTCTAAAAAGAGTTGCTTCGGAGCTCACTGTCTTTCAGCCATGGGAGAATATAGCAGGAAGGAAGCAGTCTTCAAGCAAAGAAAAGTGCCCGTGAAAGAAGAGCTGAACCCTGCTAGAATATTGATCTTGGACTTTCCAGCCTCCAGAACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 583 SNX30::NMNAT1 ENSG00000148158.17::ENSG00000173614.14 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX30 ENSG00000148158.17 protein_coding + + chr9:112750760-112881671:+ chr9:112804165:+ chr9:115513040-115643951:+ chr9:115566445:+ NMNAT1 ENSG00000173614.14 protein_coding + + chr1:9943428-9985501:+ chr1:9972018:+ chr1:10003486-10045559:+ chr1:10032076:+ chr9:112804381,chr9:112804379 chr1:9963736,chr1:9963731 NA NA chr9:115566661,chr9:115566659 chr1:10023794,chr1:10023789 NA NA sense sense unknown intron 5'UTR/splice-site translocation high none |Cytidylyltransferase-like(100%) |CTP_transf_like(100%) 4 10 4 50 159 unknown ENST00000377205.6 downstream upstream duplicates(2),mismatches(1) ACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCGCAGAG|ACAACAAGGGAGGTGTCACAGTTTTCCATTTAGATCAACAACTTCAAGTTCTTACCATGGAAAATTCCGAGAAGACTGAAGTGGTTCTCCTTGCTTGTGGTTCATTCAATCCCATCACCAACATGCACCTCAGGTTGTTTGAGCTGGCCAAGGACTACATGAATGGAACAG___GAAGGTACACAGTTGTCAAAGGCATCATCTCTCCTGTTGGTGATGCCTACAAGAAGAAAGGACTCATTCCTGCCTATCACCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 584 KIAA1522::LRRN2 ENSG00000162522.11::ENSG00000170382.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA1522 ENSG00000162522.11 protein_coding + + chr1:32741830-32774970:+ chr1:32742189:+ chr1:33207431-33240571:+ chr1:33207790:+ LRRN2 ENSG00000170382.12 protein_coding - - chr1:204617170-204685738:- chr1:204620218:- chr1:204586298-204654866:- chr1:204589346:- chr1:32759640 chr1:204620633 NA NA chr1:33225241 chr1:204589761 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Immunoglobulin_I-set_domain(100%),Leucine_rich_repeat(100%) |I-set(100%),Ig_3(100%),LRRCT(100%),LRR_5(100%),LRR_8(100%),ig(100%) 6 8 4 130 15 ENST00000401073.7 ENST00000367177.4 downstream downstream duplicates(2),mismatches(1) CCGGGCGGCCCCCCGCGCAGGAAGAAGTCCCGCTCCGGCGCGTCCGGCCTCCGCCGCGCCTTCAGCTGGCTGCGGGGCAAGCGGCGCAAGAAGAAGGCGGCGGGGGCCGAGGGCGCCGAACCGGCCGCCCCCCGGGCCAAGAAGGCGGAGGACAAGGCCAAGAGGGCCAAGGGCAAAGGCCGAG|GGCTGCCCCTGATGGGGCCTGGCAATGACTGAGCAGGCCCAGCCCCAGAGGACAAGGAAGAGAAGGCATATTGAGGAGGGCAAGAAGTGACGCCCGGTGTAGAATGACTGCCCTGGGAGGGTGGTTCCTTGGGCCCTGGCAGGGTTGCTGACCCTTACCCTGCAAAACACAAAGAGCAGGACTCCAGACTCTTCTTGTGAATGGTCCCCTGCCCTGCAGCTCCACCATGAGGCTTCTCGTGGCCCCACTCTTGCTAGCTTGGGTGGCTGGTGCCACTGCCGCTGTGCCCGTGGTACCCTG PGGPPRRKKSRSGASGLRRAFSWLRGKRRKKKAAGAEGAEPAAPRAKKAEDKAKRAKGKGR|glplmgpgnd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 586 TSEN2::ENSG00000285517 ENSG00000154743.19::ENSG00000285517.1 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 104 TRUE 47 TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12505231:+ chr3:12525920-12583048:+ chr3:12546730:+ ENSG00000285517 ENSG00000285517.1 lncRNA + + chr12:30795458-30879268:+ chr12:30856479:+ chr12:30948392-31032202:+ chr12:31009413:+ chr3:12506363,chr3:12506363 chr12:30853148,chr12:30853145 NA NA chr3:12547862,chr3:12547862 chr12:31006082,chr12:31006079 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none tRNA_intron_endonuclease__N-terminal_domain(49%)| tRNA_int_endo_N(9%)| 1 2 14 114 5 ENST00000681140.1 unknown downstream upstream mismatches(1) GGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAA___TTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAG|AACAATCAACAAAGCAGCCAGGTGTGTTGATGACAGCTCTCAAGCTTTCACAAGGTGTAATAGGACGGATGAGCCCATTCCATTGAGACTAGCACTACCCAGGAGAGCCAGGAAGGTAAAGAGACCACCTACAACAGTGTAATCCGTCCAAATAAGGACATCAAGTCAAATGGATGGAGGGAGACAGTAAATTTAAAACATTAAATTTTAAGTAAAAACAAGTCATACACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAACATTGAC...TAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAACTTTTGCAACCTACTCATCTGAC GPDHEYVLVEEAECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEE|nnqqssqvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 587 TSEN2::ENSG00000285517 ENSG00000154743.19::ENSG00000285517.1 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 104 TRUE 47 TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12505231:+ chr3:12525920-12583048:+ chr3:12546730:+ ENSG00000285517 ENSG00000285517.1 lncRNA + + chr12:30795458-30879268:+ chr12:30878672:+ chr12:30948392-31032202:+ chr12:31031606:+ chr3:12506363,chr3:12506363 chr12:30853148,chr12:30853145 NA NA chr3:12547862,chr3:12547862 chr12:31006082,chr12:31006079 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none tRNA_intron_endonuclease__N-terminal_domain(49%)| tRNA_int_endo_N(9%)| 0 1 8 114 4 ENST00000681140.1 ENST00000648700.1 downstream upstream mismatches(1) GCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAA___TTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAG|GTGCCATTCTAAGCCCCTTCAGTGATGAGAAGAATAATTCTCGAAGCCTCACTAGAGAGATGTGTGAGTGACAATATGGAACGAAGGCCTGATGGTGAAGTTTCAGAAACTAGTTCCTGAGAGTGGTTCATATGTTAAGCTGAGGTGAAATTACCAACCCCCTTTAAATTATGTCATGCTACTTCGATGATACATAAAGTTTCTCCTACTCTGCCCAGCTCCTCTTCC...AAAGCTACTTCCAGCTGGGTGCGCTGGGTCgCGTTTGTgATCCTAATACTTTGGGAGGCCAAGGCGTGCGGATCACTTGAGGTAAGGAGTTCAGGACC AECAMSEREAAPNEELVQRNRLICRRNPYRIFEYLQLSLEE|vpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 589 ADAMTS9::TSEN2 ENSG00000163638.13::ENSG00000154743.19 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 62 FALSE NA FALSE NA ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64594258:- chr3:64501330-64673676:- chr3:64579934:- TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12539161:+ chr3:12525920-12583048:+ chr3:12580660:+ chr3:64570494,chr3:64570499 chr3:12537502,chr3:12537497 NA NA chr3:64556170,chr3:64556175 chr3:12579001,chr3:12578996 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none ADAM-TS_Spacer_1(100%),ADAMTS_cysteine-rich_domain_2(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(100%),Reprolysin_family_propeptide(100%),Thrombospondin_type_1_domain(64%)|tRNA_intron_endonuclease__catalytic_C-terminal_domain(0%) ADAM_CR_2(100%),ADAM_CR_3(100%),ADAM_spacer1(100%),Pep_M12B_propep(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_5(100%),TSP1_ADAMTS(23%),TSP_1(37%)|tRNA_int_endo(0%) 4 2 6 58 37 ENST00000498707.5 ENST00000446004.6 upstream upstream duplicates(3),mismatches(1) GTGACACCCTGTGGGCAATGGAAGGCCTTGGACTGGAGCTCT___TGCTCTGTGACCTGTGGGCAAGGTAGGGCAACCCGGCAAGTGATGTGTGTCAACTACAG...TATCGTCCCCGGAGCGCCAGCCCCAGCCGCtCCCATGTGCTCGGTGGAAACCAGTGGAGAACTGGCCCCTGGGGAGCA___TGTTCCAGTACCTGTGCTGGCGG...GGCAACTGGGGAGAG___TGCACTAAGCTGTGTGGTGGAGGCATAAGAACAAGACTGGTGGTCTGTCAGCGGTCCAACGGTGAACGGTTTCCAGATTTGAGCTGTGAAATTCTTGATAAACCTCCCGATCGTGAGCAGTGTAACACACATGCTTGTCCACACGACGCTGCATGGAGTACTGGCCCTTGGAGCTCG|TCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTG GNWGECTKLCGGGIRTRLVVCQRSNGERFPDLSCEILDKPPDREQCNTHACPHDAAWSTGPWSS|SRSVVQAGVQCCDLGSLQPLPAGFKRFSCLSLLSSWDYRHAPPHTANFCIFSRDGVSLCWPGWSGTPDLK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 591 ENDOV::SEPTIN9 ENSG00000173818.17::ENSG00000184640.20 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENDOV ENSG00000173818.17 protein_coding + + chr17:80415165-80438086:+ chr17:80429831:+ chr17:78388965-78411886:+ chr17:78403631:+ SEPTIN9 ENSG00000184640.20 protein_coding + + chr17:77280569-77500596:+ chr17:77307141:+ chr17:75276651-75496678:+ chr17:75303223:+ chr17:80435260,chr17:80435470,chr17:80435250 chr17:77301235,chr17:77301482,chr17:77301222 NA NA chr17:78409060,chr17:78409270,chr17:78409050 chr17:75297317,chr17:75297564,chr17:75297304 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none Endonuclease_V(100%)|Septin(100%) Endonuclease_5(100%)|MMR_HSR1(100%),Ras(100%),Septin(100%) 1 5 6 185 911 ENST00000521634.5 ENST00000427177.6 downstream upstream mismatches(1) CTGGGACTGTCCTGGcAATG___GCCCTGAGGAGCCACGACCGCAGCACCAGGCCCCTCTACATCTCCGTGGGCCACAGGATGAGCCTGGAGGCCGCTGTGCGC...GCACATCCGCAAGTCGCTGGGACTCCCCGGGCCACCCACACCGAG___GAGCCCGAAGGCGCAGAGGCCAGTGGCATGCCCCAAAGGAGACTCCGGAGAGTCCTCAG|GAGGCACGCGGACCTCCAGTGGCCGGCTCCGGAGGCTTGGTGACTCCAGTGGCCCAG___CCTTGAAAAGATCTTTTGAGGTCGAGGAGGTCGAGACACCCAACTCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGCCACTGTGGCCAGCTCCACCCAGAAATTCCAGGACCTGGGCGTGAAGAACTCAGAACCCTCGGCCCGCCATGTGGACTCCCTAAG...GCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCGGGCTCAAGCAGGCGCCTGCATCACGGAACGAGAAGGCCCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4730 chr17:80419418-80419493:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE septin 9 2 AML* leukaemia_lymphoma fusion translocation 594 HAAO::THADA ENSG00000162882.15::ENSG00000115970.19 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 105 TRUE 48 HAAO ENSG00000162882.15 protein_coding - - chr2:42767089-42792593:- chr2:42783784:- chr2:42994229-43019733:- chr2:43010924:- THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43232882:- chr2:43457990-43823177:- chr2:43460021:- chr2:42783470 chr2:43279716 NA NA chr2:43010610 chr2:43506855 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none 3-hydroxyanthranilic_acid_dioxygenase(54%)| 3-HAO(39%)| 0 3 5 25 122 ENST00000294973.11 ENST00000405975.7 upstream downstream none CTGGAGGGAGACATGGTTCTCCGAGTCCTGGAGCAAGGGAAACACCGGGATGTGGTCATTCGGCAGGGAGAG|AGTTTGCCTTCTGCCAGGTGGATGCCTCCATCGCTCTGGCCCTGGCCCTGGCCGTCCTGTGTGATCTGCTCCAGCAGTGGGACCAGTTGGCCCCTGGACTGCCCATCCTGCTGGGATGGCTGTTGGGAGAGAGTGATGACCTCGTGGCCTGTGTGGAGAGCATGCATCAG___GTGGAAGAAGACTACCTGTTTGAAAAAGCAGAAGTCAACTTTTGGGCCGAGACCCTGATCTTTGTGAAATACCTC LEGDMVLRVLEQGKHRDVVIRQGE|slpsarwmppslwpwpwpscvicsssgtswpldcpscwdgcwervmtswpvwracirwkkttclkkqkstfgprp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 595 HAAO::THADA ENSG00000162882.15::ENSG00000115970.19 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 105 TRUE 48 HAAO ENSG00000162882.15 protein_coding - - chr2:42767089-42792593:- chr2:42788529:- chr2:42994229-43019733:- chr2:43015669:- THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43232882:- chr2:43457990-43823177:- chr2:43460021:- chr2:42783470 chr2:43279716 NA NA chr2:43010610 chr2:43506855 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none 3-hydroxyanthranilic_acid_dioxygenase(35%)| 3-HAO(17%)| 1 0 5 17 122 ENST00000294973.11 ENST00000405975.7 upstream downstream duplicates(2) GAGGCGCCCGGGACAGTCATGGAGCGCCGCCTGGGAGTGAGGGCCTGGGTGAAGGAGAACCGGGGCTCCTTCCAGCCCCCGGTCTGCAACAAGCTCAT___GCACCAGGAGCAGCTCAAAGTCATGTTC...GACTATCACATCGAAGAGGGTGAAGAG|AGTTTGCCTTCTGCCAGGTGGATGCCTCCATCGCTCTGGCCCTGGCCCTGGCCGTCCTGTGTGATCTGCTCCAGCAGTGGGACCAGTTGGCCCCTGGACTGCCCATCCTGCTGGGATGGCTGTTGGGAGAGAGTGATGACCTCGTGGCCTGTGTGGAGAGCATGCATCAG___GTGGAAGAAGACTACCTGTTTGAAAAAGCAGAAGTCAACTTTTG DYHIEEGEE|slpsarwmppslwpwpwpscvicsssgtswpldcpscwdgcwervmtswpvwracirwkkttclkkqkstf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 599 FAM20A::LINC01476 ENSG00000108950.12::ENSG00000265313.8 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM20A ENSG00000108950.12 protein_coding - - chr17:68535113-68601367:- chr17:68600263:- chr17:66531254-66597508:- chr17:66596404:- LINC01476 ENSG00000265313.8 lncRNA - - chr17:59422088-59526946:- chr17:59464695:- chr17:57499449-57604307:- chr17:57542056:- chr17:68597418,chr17:68597419 chr17:59501429,chr17:59501430 NA NA chr17:66593559,chr17:66593560 chr17:57578790,chr17:57578791 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none none none 0 1 4 9 1 ENST00000592554.2 ENST00000702234.1 upstream downstream duplicates(2) CCGAACCGAGCCCCGGACTGAACCGGCTGGCGGCAGCCACAGCGGGTCGAGCTCCAAGTTGCAGGCCCTCTTCGCCCACCCGCTGTACAACGTCCCGGAGGAGCCGCCTCTCCTGGGAGCCGAGGACTCGCTCCTGGCCAGCCAGGAGGCGCTGCGGTATTACCGGAGGAAGGTGGCCCGCTGGAACAG|AAATGGAATTTCGCCATGTTGCCCAGGCTGGTCTTGAACGCTGGGACTCAATCCACATGCCTCTGCTTCCCAAAGTGCTGGAGTTACAGGT___ATGTCAATGTG RTEPRTEPAGGSHSGSSSKLQALFAHPLYNVPEEPPLLGAEDSLLASQEALRYYRRKVARWNr|ngispccpgws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 600 NSF::PLEKHM1 ENSG00000073969.19::ENSG00000225190.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 63 FALSE NA FALSE NA NSF ENSG00000073969.19 protein_coding + + chr17:46590669-46757679:+ chr17:46704854:+ chr17:44668035-44835045:+ chr17:44782220:+ PLEKHM1 ENSG00000225190.12 protein_coding - - chr17:45435900-45490758:- chr17:45458439:- chr17:43513266-43568124:- chr17:43535805:- chr17:46709127,chr17:46709123 chr17:45468243,chr17:45468247 NA NA chr17:44786493,chr17:44786489 chr17:43545609,chr17:43545613 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(52%),Cell_division_protein_48_(CDC48)__N-terminal_domain(100%),Cell_division_protein_48_(CDC48)__domain_2(100%)|Putative_zinc-RING_and/or_ribbon(100%) AAA(45%),AAA_2(100%),AAA_lid_3(100%),CDC48_2(100%),CDC48_N(100%)|zf-RING_9(100%) 1 0 4 427 92 ENST00000706400.1 ENST00000430334.8 downstream downstream duplicates(1),mismatches(1) AAGAATTTCAGTGGTGCTGAATTGGAGGGTCTGGTGCGAGCAGCCCAGTCCACTGCTATGAATAGACACATAAAG___GCCAGTACTAAAGTGGAAGTGGACATGGAGAAAGCAGAAAGCCTGCAAGTGACGAGAGGAGACTTCCTTGCTTCTTTGGAGAATGATATCAAACCA|AAAAACAAGAGCTGGATCTCAGAGGATGACTTCTACCGGCCTTCCCGGGAGCAACCCCTGGAGAGTGCTTCAGACCACCCAATAGCTTCTTACcGGGGGAC...GGGTCAAGGCCTGGTCTCCACAGGCATTTTTCTCAAGAACCAAGAAAAAACTGCTCCCTGGGGGCGTTAGACCAAGCGTGTGTACCTTCCCCAGGAAGAAGGCAA KNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDIKP|KNKSWISEDDFYRPSREQPLESASDHPIASYRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 615 ARHGDIA::EME1 ENSG00000141522.12::ENSG00000154920.15 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 64 TRUE 107 TRUE 49 ARHGDIA ENSG00000141522.12 protein_coding - - chr17:81867721-81871378:- chr17:81871298:- chr17:79825597-79829254:- chr17:79829174:- EME1 ENSG00000154920.15 protein_coding + + chr17:50373220-50381483:+ chr17:50375185:+ chr17:48450581-48458844:+ chr17:48452546:+ chr17:81870642,chr17:81870642,chr17:81870648,chr17:81870648 chr17:50373127,chr17:50373131,chr17:50373121,chr17:50373122 NA NA chr17:79828518,chr17:79828518,chr17:79828524,chr17:79828524 chr17:48450488,chr17:48450492,chr17:48450482,chr17:48450483 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |ERCC4_domain(100%) |ERCC4(100%) 0 14 0 2015 173 ENST00000400721.8 ENST00000338165.9 upstream upstream duplicates(2) CGACGTTCGTCATTTAGTGCGGGAGGGATCCTGAACCGCGCGGCCGAACCCTCCG|GGAATTATTTGATAGCACATACTGATGGCTCTAAAGAAGTCATCACCCTCACTGGATTCTGGTGATAGTGACTCTGAGGAGTTG...AACATTTGCCTTTCTGAAGAAGGAACCATCTTCAACAAAGAGGAGACAGCCTGAAAGGGAAGAGAAGATTGTAGTGGTTGACATCTCAGATTGTGAAGCCTCCTGTCCTCCAGCACCAGAGTTATTTTCACCACCTGTCCCAGAcATAGCTGAAACTGTCACACAAACACAGCCAGTCAGGTTGCTAAGCAGTGAAAGTGAAGATGAAGAAGAATTTATTCCTCTGGCTCAAAGGCTTACATGTAAGTTTCTGACCCACAAGCAACTGAGCCCTGAGGACTCTAGCTCCCCAGTTAAAAGTGTTTTGaAT...GAAGTTCCCCTCCATGATACCCCAGAGAGGAGTGCAGCAGATAACAAGGACCTGATCTTAGATCCATGCTGTCAGCTTCCAGCCTACCTGTCTACCTGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 616 ARHGDIA::EME1 ENSG00000141522.12::ENSG00000154920.15 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 107 TRUE 49 ARHGDIA ENSG00000141522.12 protein_coding - - chr17:81867721-81871378:- chr17:81871298:- chr17:79825597-79829254:- chr17:79829174:- EME1 ENSG00000154920.15 protein_coding + + chr17:50373220-50381483:+ chr17:50376066:+ chr17:48450581-48458844:+ chr17:48453427:+ chr17:81870642,chr17:81870642,chr17:81870648,chr17:81870648 chr17:50373127,chr17:50373131,chr17:50373121,chr17:50373122 NA NA chr17:79828518,chr17:79828518,chr17:79828524,chr17:79828524 chr17:48450488,chr17:48450492,chr17:48450482,chr17:48450483 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |ERCC4_domain(100%) |ERCC4(100%) 0 6 0 2015 212 ENST00000400721.8 ENST00000338165.9 upstream upstream duplicates(1) CGTCATTTAGTGCGGGAGGGATCCTGAACCGCGCGGCCGAACCCTCCG|TGCTCTTACAGATGGAAGGTGGGGGCCAGCTCCTAGGAGCACTGCAGACCATGGAGTGCCGCTGTGTGATTGAGGCGCAGGCTGTGCCTTGCAGTGTCACTTGGAGGAGAAGGGCTGGGCCGTCTGAG___GACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 618 ENSG00000286905::RNASEH1-DT ENSG00000286905.1::ENSG00000234171.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286905 ENSG00000286905.1 protein_coding - - chr2:3532008-3558333:- chr2:3552144:- chr2:3579598-3605923:- chr2:3599734:- RNASEH1-DT ENSG00000234171.5 lncRNA + + chr2:3558419-3564842:+ chr2:3561317:+ chr2:3606009-3612432:+ chr2:3608907:+ chr2:3551411 chr2:3560919 NA NA chr2:3599001 chr2:3608509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none Cauli_VI(100%)| 0 1 5 939 61 ENST00000654051.1 ENST00000664922.3 upstream upstream duplicates(1) CCGGTTTCCTGCTGCCAGATTTAAGAAGTTTGCCACAGAGGATGAGGCCTGGGCCTTTGTCAGGAAATCTGCAAGCCCGGAAGTTTCAGAAG___GGCATGAAAATCAACATGGACAAGAATCGGAGGCGAAAGCCAGCAAGCGACTCCGTGAGCCACTGGATGGAGATGGACATGAAAGCGCAGAGCCGTATGCAAAGCACATGAAGCCGAGCGTGGAGCCGGCGCCTCCAGTTAGCAGAGACACGTTTTCCTACATGG|GGTCCATTCAAGAATTGTGCCCACAATATACCAGGCACTTGTCCAGACCTGCATCGTCCAATGCCCACCTCGACCTCCCAAAGTGTTGGGATTAGAGGCGTGAGCCACCGCGCCCTGCCTGCATGTGGCTATTGAGATGTGCTGTATGATACACACCaGACTTTGAAGACTCAGTGTGAAAAATAAAAAGAATTTTAAGAGGGGTGGGGGTCGAGGGGAGGCAGAGCAGTAGGACAAATAGCTAATGCACG RFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYM|gsiqelcpqytrhlsrpassnahldlpkcwd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 619 RNASEH1::RNASEH1-DT ENSG00000171865.10::ENSG00000234171.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNASEH1 ENSG00000171865.10 protein_coding - - chr2:3541430-3558333:- chr2:3552144:- chr2:3589020-3605923:- chr2:3599734:- RNASEH1-DT ENSG00000234171.5 lncRNA + + chr2:3558419-3564842:+ chr2:3561317:+ chr2:3606009-3612432:+ chr2:3608907:+ chr2:3551411 chr2:3560919 NA NA chr2:3599001 chr2:3608509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Caulimovirus_viroplasmin(100%)| Cauli_VI(100%)| 0 1 5 939 61 ENST00000315212.4 ENST00000664922.3 upstream upstream duplicates(1) CCGGTTTCCTGCTGCCAGATTTAAGAAGTTTGCCACAGAGGATGAGGCCTGGGCCTTTGTCAGGAAATCTGCAAGCCCGGAAGTTTCAGAAG___GGCATGAAAATCAACATGGACAAGAATCGGAGGCGAAAGCCAGCAAGCGACTCCGTGAGCCACTGGATGGAGATGGACATGAAAGCGCAGAGCCGTATGCAAAGCACATGAAGCCGAGCGTGGAGCCGGCGCCTCCAGTTAGCAGAGACACGTTTTCCTACATGG|GGTCCATTCAAGAATTGTGCCCACAATATACCAGGCACTTGTCCAGACCTGCATCGTCCAATGCCCACCTCGACCTCCCAAAGTGTTGGGATTAGAGGCGTGAGCCACCGCGCCCTGCCTGCATGTGGCTATTGAGATGTGCTGTATGATACACACCaGACTTTGAAGACTCAGTGTGAAAAATAAAAAGAATTTTAAGAGGGGTGGGGGTCGAGGGGAGGCAGAGCAGTAGGACAAATAGCTAATGCACG RFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYM|gsiqelcpqytrhlsrpassnahldlpkcwd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 621 UBE2O::VMP1 ENSG00000175931.13::ENSG00000062716.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBE2O ENSG00000175931.13 protein_coding - + chr17:76389456-76453152:- chr17:76391085:+ chr17:74385537-74449234:- chr17:74387166:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ NA NA NA NA NA NA NA NA antisense sense unknown CDS CDS/splice-site duplication/3'-3' medium none none none 1 1 2 139 1498 unknown ENST00000262291.9 downstream upstream duplicates(1) CTGGCCTCTCCCACGGTGATGCTCTTTCCTCTGTGCCTGGCAGCTACTTGTCCTCTGTGCACTCCGGCATGCCTGCCTCTAGCAGGGCAGCCCGGAACTGCGTCAGGACACCCCGGATGCTCTTGATGAAACCCTTGGAAAGTGGGAAGAGGGGGAAGCCGATGTCAGGGTAGCCACTCTTCTCAG|AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAG...GAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 624 USP32::PLEKHM1 ENSG00000170832.13::ENSG00000225190.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60391882:- chr17:58254688-58499831:- chr17:58469243:- PLEKHM1 ENSG00000225190.12 protein_coding - + chr17:45435900-45490758:- chr17:45482350:+ chr17:43513266-43568124:- chr17:43559716:+ chr17:60368257,chr17:60368259 chr17:45468956,chr17:45468954 NA NA chr17:58445618,chr17:58445620 chr17:43546322,chr17:43546320 NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' medium none none none 0 3 0 231 11 ENST00000300896.9 unknown upstream upstream mismatches(1) GATGAGGGGAGCATGGGTGCCAAGGAGTCACGGATCGGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG|GACAGTGCCCAAGGAAGTGAGCCAAGCCGATGATACAACTGTCCCCTGCAGCCCTTCCCCGCCCTTGATCCTCCCTCACCCACCTACCGGGATGGCAGCCTGGGGGTCCAGTCCATTCTCCACCACTGAAAGCATCTCCACTCACGCAGCTGCTCCCTCAGAG...GAAAGAAACAAGGAAGGAAAGCCCAGGGGGCTTAGTCGTTGGGAGGCAAGGAGTCCTGGGTGCCAGGGGTGGGTCCACCCCAAGGAGTAGGTGGTAAGGGC...CCAGAAAGCCAAGGCCCTGTAGGATTGAAACCTGTAGGCAGGGAACGACAGGCTGATTCAGATACGGAGCTGCAGGTTCGAGGGGGAGGCTGCAGCTGAAG MGAKESRIGFLSYEEALRR|gqcprk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 628 ARHGAP27::RNF157 ENSG00000159314.13::ENSG00000141576.16 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP27 ENSG00000159314.13 protein_coding - - chr17:45393902-45434421:- chr17:45425564:- chr17:43471268-43511787:- chr17:43502930:- RNF157 ENSG00000141576.16 protein_coding - + chr17:76142465-76240493:- chr17:76217195:+ chr17:74138546-74236574:- chr17:74213276:+ chr17:45424473,chr17:45424476 chr17:76213994,chr17:76213991 NA NA chr17:43501839,chr17:43501842 chr17:74210075,chr17:74210072 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' medium none none SH3_9(100%)| 1 1 0 366 9 ENST00000376922.6 unknown upstream upstream mismappers(1) GCCCCGGAGGCGgCGCACATGAGCAGGCAGCCCCGACTGGAAGGAGCCCGGGGCCCTCATTCCTTCTCCTCCACTGGGAACTGA|AGATGGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGGGTCAAGAGACCTGCCCGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 635 CACTIN::ZFR2 ENSG00000105298.14::ENSG00000105278.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACTIN ENSG00000105298.14 protein_coding - - chr19:3610645-3626815:- chr19:3613471:- chr19:3610643-3626813:- chr19:3613469:- ZFR2 ENSG00000105278.12 protein_coding - - chr19:3804024-3869038:- chr19:3804898:- chr19:3804022-3869036:- chr19:3804896:- chr19:3613343,chr19:3613350 chr19:3805053,chr19:3805052 NA NA chr19:3613341,chr19:3613348 chr19:3805051,chr19:3805050 NA NA sense sense unknown CDS 3'UTR duplication low none Conserved_mid_region_of_cactin(100%)| Cactin_mid(100%)| 0 0 8 131 80 ENST00000585942.5 ENST00000262961.9 upstream downstream mismatches(1) ACTGGGAGAGCCTCCTGCAGCAGCTTCGTGCCCACATGGCgCGGGCCCG___GCTGCGTGAGCGCCACCAGGACGTGCTGCGGCAGAAGCTGTACAAACTGAAGCAGGAGCAGGGCGTGGAGAGCGAGCCGCTGTTCCCCATCCTCAAGCAGGAGCCCCAGTCCCCCA...|...CAAAGAAACAAACAAACAAACAAACAAACAAACAAAACTTTCTTTGGATGCGGCTGCGGCATGGATTTGAAATCACGTGGGCAGGCCCTGTTCTGGGGCCC...GACAAGCCCAGGGaAGCTaCCAGCCGGCATCCCCACGCCCCCAGCCgAGCCTGCTCCAAgCAGACCCCCCACCCcCCTCCACAGCCAGcATGaCAGCgGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 648 SIRT7::CARD14 ENSG00000187531.14::ENSG00000141527.19 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIRT7 ENSG00000187531.14 protein_coding - - chr17:81911939-81921323:- chr17:81921219:- chr17:79869815-79879199:- chr17:79879095:- CARD14 ENSG00000141527.19 protein_coding + + chr17:80169992-80216073:+ chr17:80215866:+ chr17:78143791-78189872:+ chr17:78189665:+ chr17:81920332,chr17:81920338 chr17:80215103,chr17:80215097 NA NA chr17:79878208,chr17:79878214 chr17:78188902,chr17:78188896 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none |Sulfatase(47%) 0 1 1 628 183 ENST00000572902.5 ENST00000703570.1 upstream upstream none CTGGCTTGCTGGACCTGGGCTGGGGTGCCAAGTGGCGCCTGCTGCGTCAGAGCTCAAGGAATCTGTGCCCACCACCAGCTCCTGGTCCGTAGGAG|CCAAAGGGTAGCAGCAACCCAAGTGCCCACTGACGGATGAATATGGAGAAG...GGAATATGAGTCAGCCCTGAAGAGGAGGGAAGTTCTGACTCGTGCTACAGCATATGGTTAACCCTGAGGACATTGTGCTGAGTGAAGTAAGGACACAAAAGGGGGGCCGGGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 652 ASXL2::RAB10 ENSG00000143970.18::ENSG00000084733.11 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ASXL2 ENSG00000143970.18 protein_coding - - chr2:25733753-25878487:- chr2:25845480:- chr2:25956622-26101356:- chr2:26068349:- RAB10 ENSG00000084733.11 protein_coding + + chr2:26034084-26137454:+ chr2:26098660:+ chr2:26256953-26360323:+ chr2:26321529:+ NA NA NA NA NA NA NA NA sense sense out-of-frame intron intron inversion low none HB1__ASXL__restriction_endonuclease_HTH_domain(50%)|Ras_family(79%) HARE-HTH(45%)|Arf(31%),Gtr1_RagA(14%),Ras(31%),Roc(30%) 1 1 0 91 1498 ENST00000435504.9 ENST00000264710.5 upstream upstream none AGAAGGGCAGGACCTGGGCGGAGGCCGCCAAGACG___GTCTTAGAAAAATACCCCAATACACCCATGAGTCATAAAGAAATTCTTCAAGTTATCCAGAGAGAAGGACTAAAAGAAATCAG|a|AGGAATAGACTTCAAGATCAAAACAGTTGAATTACAAGGAAAGAAGATCAAGCTACAGATATG___GGATACAGCAGGCCAGGA KGRTWAEAAKTVLEKYPNTPMSHKEILQVIQREGLKEIr|rnrlqdqns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE additional sex combs like 2, transcriptional regulator 2 melanoma, CCRCC, AML epithelial, leukaemia_lymphoma TSG other,nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 659 WAC::DDC ENSG00000095787.26::ENSG00000132437.18 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WAC ENSG00000095787.26 protein_coding + + chr10:28532493-28623112:+ chr10:28534034:+ chr10:28821422-28912041:+ chr10:28822963:+ DDC ENSG00000132437.18 protein_coding - + chr7:50458436-50565405:- chr7:50528176:+ chr7:50526134-50633102:- chr7:50595874:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none none none 28 64 24 1160 327 ENST00000706612.1 unknown downstream upstream duplicates(6),inconsistently_clipped(1),mismatches(1) CCAGGCCTCAGAGGAGGAGAAAGGCCGGAGCCAGCCGAG___...CACACTCACAGGCCGGGCATTGATGGTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGG___CTGTCACGACCGGAGGGGGGACTCGCAGCCTTACCAG|GGCTTCCTGCAGGGCAGACGCACGCATGGCGAAGTTGCCATCTGAGGGGATGGCTTTTAATTTCACTCCACCAATTAACCCAGCTCTTTCCACTGAGGAGTGTGCCTGGAAAGAAGACAGCAGAGTTGGATTTGTACAG___GTATTGTGAGAGCTTCTCCTCATGGACTGCCCCCAGCCTGGCCTAGGACGACTGCTCCTGTCTCTATCAGAGGAGAACGGCCCAG MRGNSRDSVMAVTTGGGTRSLTr|ascradarmaklpsegmafnftppinpalsteecawkedsrvgfvqvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 662 RSBN1::OLFML3 ENSG00000081019.14::ENSG00000116774.12 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RSBN1 ENSG00000081019.14 protein_coding - - chr1:113761832-113812476:- chr1:113777210:- chr1:114304454-114355098:- chr1:114319832:- OLFML3 ENSG00000116774.12 protein_coding + - chr1:113979391-114035572:+ chr1:114026775:- chr1:114522013-114578194:+ chr1:114569397:- chr1:113774606,chr1:113774783,chr1:113774791 chr1:114028342,chr1:114028342,chr1:114028347 NA NA chr1:114317228,chr1:114317405,chr1:114317413 chr1:114570964,chr1:114570964,chr1:114570969 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 19 16 6 142 46 ENST00000261441.9 unknown upstream downstream mismatches(1) CTGAAA___ATGACTTTGCCCTGGGGTACACTTTCTAGCCTCCGACTCCAGTGTAGGTCCCAGAGTGATGATGGGCCTATAATGTGGGTAAGGCCAGGAGAACAGATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACG|GTGAGGAATGTAAGATCTGGGGAGTTAAGATCATGCCCACAGTCATgTAGGTAAGTGATGAAGTTGGAGCTTTGAGCTGCAGGATCCTTTGGTGTAAGGGTTTAAGGGGATTTCATATATAATATTTGAGGCCTCTGTGG LKMTLPWGTLSSLRLQCRSQSDDGPIMWVRPGEQMIPTADMPKSPFKRRr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 663 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 66 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:104000255:- chr11:103777917-104035107:- chr11:103870983:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |CUB_domain(100%),PDGF/VEGF_domain(100%) |CUB(100%),PDGF(100%) 5 5 13 1629 37 ENST00000282441.10 ENST00000393158.7 downstream downstream inconsistently_clipped(1) CCGGCACCCGCGGCGACCCAGGCGGCGCCGCAGGCACCCCCCGCCGGGCATCAGATCGTGCACGTCCGCGGGGACTCGGAGACCGACCTGGAGGCGCTCTTCAACGCCGTCATGAACCCCAAGACGGCCAACGTGCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCGCCGGAGCCCAAATCCCACTCCCGACAG|AGAGCAATCACCTCACAGACTTGTACCGAAGAGATGAGACCATCCAGGTGAAAGGAAACGGCTACGTGCAGAGTCCTAGATTCCCGAACAGCTACCCCAGGAACCTGCTCCTGACATGGCGGCTTCACTCTCAGGAGAATACACGGATACAGCTAGTGTTTGACAATCAGTTTGGATTAGAGGAAGCAGAAAATGATATCTGTAG___GTATGATTTTGTGGAAGTTGAAGATATATCCGA PAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQ|raitsqtcteemrpsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 664 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 67 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:104000237:- chr11:103777917-104035107:- chr11:103870965:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |CUB_domain(100%),PDGF/VEGF_domain(100%) |CUB(100%),PDGF(100%) 3 3 11 1629 63 ENST00000282441.10 ENST00000302251.9 downstream downstream none CGCCGGGCATCAGATCGTGCACGTCCGCGGGGACTCGGAGACCGACCTGGAGGCGCTCTTCAACGCCGTCATGAACCCCAAGACGGCCAACGTGCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCGCCGGAGCCCAAATCCCACTCCCGACAG|ACTTGTACCGAAGAGATGAGACCATCCAGGTGAAAGGAAACGGCTACGTGCAGAGTCCTAGATTCCCGAACAGCTACCCCAGGAACCTGCTCCTGACATGGCGGCTTCACTCTCAGGAGAATACACGGATACAGCTAGTGTTTGACAATCAGTTTGGATTAGAGGAAGCAGAAAATGATATCTGTAG___GTATGATTTTGTGGAAGTTGAAGATATATCCGA AGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQ|tcteemrpsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 665 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 68 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:103947724:- chr11:103777917-104035107:- chr11:103818452:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |PDGF/VEGF_domain(100%) |PDGF(100%) 3 5 3 1629 51 ENST00000282441.10 ENST00000302251.9 downstream downstream mismatches(1) CGTCCGCGGGGACTCGGAGACCGACCTGGAGGCGCTCTTCAACGCCGTCATGAACCCCAAGACGGCCAACGTGCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCGCCGGAGCCCAAATCCCACTCCCGACAG|GAAGATTTCCAACCCGCAGCAGCTTCAGAGACCAACTGGGAATCTGTCACAAGCTCTATTTCA___GGGGTATCCTATAACTCTCCATCAGTAACGGATCCCACTCTGATTGCGGATGC...ATCCAGAGTCATGGCAAGAAGATCTTGAGAATATGTATCTGGACACCCCTCGGTATCGAGGCA...ATGACCGGAAGTCAAAAG___TTGACCTGGATAGGCTCAATGATGATGCCAAGCGTTACAGTTGCAC VRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQ|EDFQPAAASETNWESVTSSISGVSYNSPSVTDPTLIAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 666 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:103909819:- chr11:103777917-104035107:- chr11:103780547:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |PDGF/VEGF_domain(36%) |PDGF(0%) 1 0 0 1629 95 ENST00000282441.10 ENST00000302251.9 downstream downstream none AGACGGCCAACGTGCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCAAGCCGCCGGAGCCCAAATCCCACTCCCGACAG|GTATTACAGTTTGAGCCTGGCCACATCAAGAG TANVPQTVPMRLRKLPDSFFKPPEPKSHSRQ|VLQFEPGHIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 678 ZNF433::ZNF20 ENSG00000197647.13::ENSG00000132010.16 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF433 ENSG00000197647.13 protein_coding - - chr19:12014715-12035741:- chr19:12035537:- chr19:12125530-12146556:- chr19:12146352:- ZNF20 ENSG00000132010.16 protein_coding - - chr19:12092843-12140355:- chr19:12093052:- chr19:12203658-12251170:- chr19:12203867:- chr19:12017734,chr19:12017741 chr19:12112982,chr19:12112986 NA NA chr19:12128549,chr19:12128556 chr19:12223797,chr19:12223801 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 2 1 2 125 5 ENST00000344980.11 ENST00000600335.5 upstream downstream mismatches(1) CGGGGAGGGCGAAGGCCCTGCTCTCCTCGGTTCCCGGCTCCAGGCGGCGAGCTGAGGTTGGGAGCCTGGCTTTCCCCTCCGAGAGGGTTCAGGTGCCTCTGCCATAGCTTCTGTCGCCTGTGCTGTGACCCGCACTGGTCGTGGGAGTCACCTGAAAGGCAAGAAATG|ACGGAGTTTTACTCTTGTTGCCCAGGCTGGAGTGCAACGGCGGGATCTCGGCTCACCGCAACCTCCGCCTCCAGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGATTACAAGCACGCGCCACCACGCCAG M|tefysccpgwsatagsrltatsasrvqaillpqspe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 689 NRP1::PARD3 ENSG00000099250.18::ENSG00000148498.17 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NRP1 ENSG00000099250.18 protein_coding - - chr10:33177492-33336262:- chr10:33330708:- chr10:33466420-33625190:- chr10:33619636:- PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34317338:- chr10:34398488-35104253:- chr10:34606266:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none CUB_domain(24%)| CUB(0%)| 3 1 1 133 716 ENST00000265371.8 ENST00000545260.5 upstream downstream none CTTCGGATCGCTTAGATTCTCCTCTTTGCTGCATTTCCCCCCACGTCCTCGTTCTCCCGCGTCTGCCTGCGGACCCGGAGAAGGGAGAATGGAGAGGGGGC...GCTTTTCGCAACG___ATAAATGTGGCGATACTATAAAAATTGAAAGCCCCGGGTACCTTACATCTCCTGGTTATCCTCATTCTTATCACCCAAGTGAAAAATGCGAATGGCTGATTCAGGCTCCGGACCCATACCAGAGAATTATGATCAACTTCAACCCTCACTTCGATTTGGAGGACAGAGACTGCAA|TGGAAGAAGACACAGAAGAAAGTTCAAGATCAGGGAGAGAGTCTGTATCCACAGCCAGTGATCAGCCTTCCCACTCTCTGGAGAGACAAATGAATGGAAACCAAGAGAAAGGTGATAAGACTGATAGAAAAAAGGATAAAACTGGAAAAGAAAAGAAGAAAGATAGAGATAAGGAG AFRNDKCGDTIKIESPGYLTSPGYPHSYHPSEKCEWLIQAPDPYQRIMINFNPHFDLEDRDCn|grrhrrkfkirervcihsq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 715 RIC8B::DRAM1 ENSG00000111785.21::ENSG00000136048.14 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIC8B ENSG00000111785.21 protein_coding + + chr12:106774621-106889316:+ chr12:106843947:+ chr12:107168399-107283094:+ chr12:107237725:+ DRAM1 ENSG00000136048.14 protein_coding + + chr12:101877580-102012130:+ chr12:101897863:+ chr12:102271358-102405908:+ chr12:102291641:+ chr12:106844899 chr12:101889314 NA NA chr12:107238677 chr12:102283092 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Guanine_nucleotide_exchange_factor_synembryn(68%)|Frag1/DRAM/Sfk1_family(83%) Ric8(58%)|Frag1(53%) 1 0 1 60 142 ENST00000392837.9 ENST00000258534.13 downstream upstream none GTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCGTTAACCCATGAAGAAACAGCCCAAGAGGCAACGACTCTAGATGAACTGCCCAGTAATAAAACAGC...AAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCTTATTAACCGAATGTTCCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGATCAG|TGATACGGGAACAACACCTCCAG SSYREGLTPVLSLLTECSRAHRNIRKFLKDQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 732 ZC3H13::CIAO2A ENSG00000123200.17::ENSG00000166797.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 70 TRUE 121 TRUE 51 ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:46042164:- chr13:46528600-46626894:- chr13:46616299:- CIAO2A ENSG00000166797.11 protein_coding - - chr15:64072565-64093857:- chr15:64081151:- chr15:64364764-64386056:- chr15:64373350:- chr13:46024796 chr15:64083988 NA NA chr13:46598931 chr15:64376187 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)|Iron-sulfur_cluster_assembly_protein(19%) zf-CCCH(100%),zf-CCCH_2(100%)|FeS_assembly_P(30%) 3 22 20 160 775 ENST00000242848.8 ENST00000300030.8 upstream downstream duplicates(1),low_entropy(1),mismatches(3) GTAGATTCGTACATGGCCCTTCACCTCGTGGTAAAGGTTATAGCAGCAATTATAGAAG___GTCACCAGAAAGACCTACAGGGGATCTTAGAGAAAGAATGAAGAACAAGCGCCAAGACGTGGACACTGAGCCCCAGAAACGAAATACAGAGGAGTCATCCTCACCTGTTAGG|GGCTGTGCTTAAGAGTAAAACTTCAGCGATGTTTACCATTTAAACATAAG___TTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAAGAAGACA___TCAATAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAA RFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVR|gca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 733 ZC3H13::CIAO2A ENSG00000123200.17::ENSG00000166797.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 71 TRUE 121 TRUE 51 ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:46042164:- chr13:46528600-46626894:- chr13:46616299:- CIAO2A ENSG00000166797.11 protein_coding - - chr15:64072565-64093857:- chr15:64075537:- chr15:64364764-64386056:- chr15:64367736:- chr13:46024796 chr15:64083988 NA NA chr13:46598931 chr15:64376187 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)|Iron-sulfur_cluster_assembly_protein(2%) zf-CCCH(100%),zf-CCCH_2(100%)|FeS_assembly_P(0%) 4 9 14 160 1044 ENST00000242848.8 ENST00000300030.8 upstream downstream mismatches(1) GCTGAAGACTGGCAACTGCCTCTATGGAAACACATGTAGATTCGTACATGGCCCTTCACCTCGTGGTAAAGGTTATAGCAGCAATTATAGAAG___GTCACCAGAAAGACCTACAGGGGATCTTAGAGAAAGAATGAAGAACAAGCGCCAAGACGTGGACACTGAGCCCCAGAAACGAAATACAGAGGAGTCATCCTCACCTGTTAGG|TTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAAGAAGACA___TCAATAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAAACCCCAACTTACGGGAAATTGTGGAACAGTGTGTCCTTGA LKTGNCLYGNTCRFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVR|LEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 734 ZC3H13::CIAO2A ENSG00000123200.17::ENSG00000166797.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 121 TRUE 51 ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:46052698:- chr13:46528600-46626894:- chr13:46626833:- CIAO2A ENSG00000166797.11 protein_coding - - chr15:64072565-64093857:- chr15:64081151:- chr15:64364764-64386056:- chr15:64373350:- chr13:46024796 chr15:64083988 NA NA chr13:46598931 chr15:64376187 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Iron-sulfur_cluster_assembly_protein(19%) |FeS_assembly_P(30%) 0 1 0 57 775 ENST00000282007.7 ENST00000300030.8 upstream downstream duplicates(1) GGCATTTTGAGGCGGTCCTCCTAGCGGCCTG|GGCTGTGCTTAAGAGTAAAACTTCAGCGATGTTTACCATTTAAACATAAG___TTGGAAATCTACATTTCTGAAGGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 735 SIN3A::IL21-AS1 ENSG00000169375.17::ENSG00000227145.2 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75389652:- chr15:75661720-75748183:- chr15:75681993:- IL21-AS1 ENSG00000227145.2 lncRNA + - chr4:122618983-122689156:+ chr4:122650982:- chr4:123540138-123610311:+ chr4:123572137:- chr15:75385553,chr15:75385558 chr4:122680491,chr4:122680493 NA NA chr15:75677894,chr15:75677899 chr4:123601646,chr4:123601648 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none C-terminal_domain_of_Sin3a_protein(40%),Paired_amphipathic_helix_repeat(100%),Sin3_family_co-repressor(100%)| PAH(100%),Sin3_corepress(100%),Sin3a_C(16%)| 15 11 13 343 51 ENST00000360439.8 unknown upstream downstream duplicates(2),mismappers(6),mismatches(3) CAGCCCTGCCATTCAGCTACGTCTCAAAGAACCTA___TGGATGTTGATGTAGAAGATTATTACCCAGCTTTCCTGGACATGGTGCGGAGCCTGCTGGATGGCAACATAGACTCATCACAGTATGAAGATTCACTGAGAGAGATGTTCACCATTCATGCCTACATTGCCTTTACCATGGACAAACTGATCCAGAGCATTGTCAGACAG|ATGGAGTCTCAATGTGTCACCAGGCTGGAGTGCAGTGGTGTCATCTTGGCTCATTGCAGCCTCAGCCTCCTGGGTTCAAGCCATTTTCCTGCCTCAGCCTCCTGAACAGCTGGGATTACAGGTTCCTCCCACCATGCCCAGATAATTTTTGTATTTTTAGAAGAGACAGGGTTTCGCCATGTTGGCCAGGCTTGTCTTGAATTCCTGGCCTCAAGTGATCCATCCACCTTGGCCTCACAAAGTGCTGGGATTACAGGCTTGAGCTACCG SPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYEDSLREMFTIHAYIAFTMDKLIQSIVRQ|mesqcvtrlecsgvilahcslsllgsshfpasas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 736 IGF1R::LRRC28 ENSG00000140443.15::ENSG00000168904.15 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 72 TRUE 122 TRUE 52 IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99333923:+ chr15:99791567-99930934:+ chr15:99874128:+ chr15:98787540 chr15:99330599 NA NA chr15:99330769 chr15:99870804 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)|Leucine_rich_repeat(34%) C_tripleX(0%),Furin-like(0%),Recep_L_domain(1%)|LRR_4(0%),LRR_8(0%) 13 6 8 81 54 ENST00000650285.1 ENST00000301981.8 downstream upstream mismatches(1) GAAAAATGCTGACCTCTGTTACCTCTCCACTGTGGACTGGTCCCTGATCCTGGATGCGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGG KNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|kVGDLKELQTLDISTNRLLTLPERLHMCLSLQYLTVDRNRLWYVPRHLCQLPSLNELSMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 737 IGF1R::LRRC28 ENSG00000140443.15::ENSG00000168904.15 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 73 TRUE 122 TRUE 52 IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99352369:+ chr15:99791567-99930934:+ chr15:99892574:+ chr15:98787540 chr15:99330599 NA NA chr15:99330769 chr15:99870804 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)| C_tripleX(0%),Furin-like(0%),Recep_L_domain(1%)| 4 9 2 81 69 ENST00000650285.1 ENST00000301981.8 downstream upstream none AGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|ATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGG___CTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGT EKPMCEKTTINNEYNYRCWTTNRCQK|nLGRSRELQYVYVDNNIHLKGLPSYLYNKVIGCSGCGAPIQVSEVKLLSFSSGQRTVFLPAEVKAIGTEHDH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 738 AKAP8::SPIRE1 ENSG00000105127.10::ENSG00000134278.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 74 FALSE NA FALSE NA AKAP8 ENSG00000105127.10 protein_coding - - chr19:15353385-15379815:- chr19:15368235:- chr19:15464196-15490626:- chr19:15479046:- SPIRE1 ENSG00000134278.16 protein_coding - - chr18:12446512-12658107:- chr18:12546904:- chr18:12446511-12658106:- chr18:12546903:- chr19:15364711,chr19:15364711,chr19:15364711 chr18:12553349,chr18:12553396,chr18:12553379 NA NA chr19:15475522,chr19:15475522,chr19:15475522 chr18:12553348,chr18:12553395,chr18:12553378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Kinase_non-catalytic_C-lobe_domain(56%) |KIND(9%) 8 8 7 321 27 ENST00000269701.7 ENST00000409402.9 upstream downstream none CGGGTTGACAGTGAAGGAGATTTCTCCGAAAATG___ATGACGCAGCTGGTGACTTCCGCTCAGGAGATGAAGAATTCAAGGGT___GAGGATGAACTCTGCGACTCTGGGAGGCAAAGAG___GAGAGAAGGAGGACGAGGACGAGGATGTGAAGAAGAGAAGGGAAAAGCAAAGGAGAAGAGACAGGACGCGGGACCGTGCAGCCGACAG|GTCATTGAATCTTTGGGAATTATTATTTATAAAGCACTGGACTATGGTTTGAAGGAGAATGAAGAAAGGGAATTAAGCCCTCCCCTAGAGCAGCTTATCGATCACATGGCCAACACGGTGGAAGCTGACGGTAGCAATGATGAGGGCTATGAGGCTGCAGAAGAAGGCCTGGGAGATGAAGATGAAAAGAGAAAAATCTCAGCTATTCGGTCATATAGAGATGTCATGA RVDSEGDFSENDDAAGDFRSGDEEFKGEDELCDSGRQRGEKEDEDEDVKKRREKQRRRDRTRDRAADr|slnlwellfikhwtmv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 739 PSMD1::SPATA3 ENSG00000173692.14::ENSG00000173699.17 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 75 TRUE 123 TRUE 53 PSMD1 ENSG00000173692.14 protein_coding + + chr2:231056845-231173116:+ chr2:231153666:+ chr2:231921559-232037830:+ chr2:232018380:+ SPATA3 ENSG00000173699.17 protein_coding + + chr2:230990324-231025055:+ chr2:231000366:+ chr2:231855039-231889770:+ chr2:231865081:+ chr2:231154933,chr2:231154932 chr2:230991434,chr2:230991430 NA NA chr2:232019647,chr2:232019646 chr2:231856149,chr2:231856145 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none HEAT_repeats(100%),Proteasome/cyclosome_repeat(100%)|Spermatogenesis-associated_protein_3_family(46%) 7TM_GPCR_Srsx(100%),7TM_GPCR_Srv(100%),7tm_1(100%),HEAT_2(100%),PC_rep(100%)|SPATA3(20%) 9 5 6 940 23 ENST00000676740.1 ENST00000452881.5 downstream upstream duplicates(1),mismatches(1) GCTGGTACAGGAAACAAG___GAAGCCATTAATTTGCTAGAACCAATGACAAACGACCCCGTGAACTACGTGAGGCAAGGGGCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGAAATCACTTGTCCAAAG___GTGAATCAGTTCAGACAGCTGTATTCCAAAGTCATCAATGATAAGCATGATGATGTCATGGCCAAGTTTGGCGCTATTCTGGCCCAGGGCATACTGGATGCAG|GGCCTCTGATTCGCGCCGGCCCGCATTCCTGCTCCTGTGCCACTTGCCCCTGCAGCTCCGCTTGCTGGCGTCGTCTGGGGCTATGCCATAGCCGCATCTTCGATGTCCTTCTGCCTCGGGACTGGCAGATGGCGCCAGGGAGAGGACTCCCCAACCTGCTCACCTTCTACAGG?TCCAAGCGCGAGGGGCTGGAGCCTCGGGGCACACAGTCCCCAGGGCCAGGCTCTGCCC...___AAAATCTTCAAGAAAACCCTCCAGTCATCGTAACGCG AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDA|gPLIRAGPHSCSCATCPCSSACWRRLGLCHSRIFDVLLPRDWQMAPGRGLPNLLTFYr?qargagasghtvprarlc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 740 PSMD1::SPATA3 ENSG00000173692.14::ENSG00000173699.17 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 123 TRUE 53 PSMD1 ENSG00000173692.14 protein_coding + + chr2:231056845-231173116:+ chr2:231153666:+ chr2:231921559-232037830:+ chr2:232018380:+ SPATA3 ENSG00000173699.17 protein_coding + + chr2:230990324-231025055:+ chr2:231002684:+ chr2:231855039-231889770:+ chr2:231867399:+ chr2:231154933,chr2:231154932 chr2:230991434,chr2:230991430 NA NA chr2:232019647,chr2:232019646 chr2:231856149,chr2:231856145 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none HEAT_repeats(100%),Proteasome/cyclosome_repeat(100%)|Spermatogenesis-associated_protein_3_family(17%) 7TM_GPCR_Srsx(100%),7TM_GPCR_Srv(100%),7tm_1(100%),HEAT_2(100%),PC_rep(100%)|SPATA3(0%) 1 0 2 940 38 ENST00000676740.1 ENST00000440792.5 downstream upstream none CCGTGAACTACGTGAGGCAAGGGGCACTCATAGCTTCAGCTCTCATCATGATCCAGCAGACTGAAATCACTTGTCCAAAG___GTGAATCAGTTCAGACAGCTG...GTCATCAATGATAAGCATGATGATGTCATGGCCAAGTTTGGCGCTATTCTGGCCCAGGGCATACTGGATGCAG|AAAATCTTCAAGAAAACCCTCCAGTCATCGTAACGCGTGTCCTCCAAG...TCTAGGAGCTGCCTACTACATCACTGAATCCTTGTGAACAAGCCCCTAGGCCCACAGTCTGGCAG___ATCCAGTTTCCATCAAAG VINDKHDDVMAKFGAILAQGILDA|enlqenppvivtrvlq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 742 HELLS::ZKSCAN5 ENSG00000119969.16::ENSG00000196652.12 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 76 TRUE 124 TRUE 54 HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94576805:+ chr10:96305086-96373662:+ chr10:96336562:+ ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99512453:+ chr7:99102285-99132323:+ chr7:99110076:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SNF2-related_domain(27%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) ResIII(32%),SNF2-rel_dom(13%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 2 4 8 94 226 ENST00000419900.6 ENST00000326775.10 downstream upstream mismatches(1) TTCAGAGAGGAGTACCAGGACCTTTTCTTGTCTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTCAAAAGATTTACACCAGAT___ATCCCTACAATGTTATATCATGGAACCCAGGAGGAACGTCAAAAATTGGTAAGAAATATTTACAAACGGAAAGGGACTTTGCAGATTCATCCTGTGGTAATCACGTCATTTGAAATAGCCATGAGAGACCGAAATGCGTTACAG|ATTGTTGCCTGCCCTGATGTGCTTCCTCGGAAGATGGCAACACCTGGAGCAGTGCAGGAGTCCTGCAGCCCCCATCCCCTGACCGTGGACACCCAGCCTGAGCAAGCGCCACAGAAGCCTCGTCTCCTGGAGGAAAATG___CCCTTCCTGTTCTCCAAGTTCCTTCCCTTCCCC QRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQ|IVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQKPRLLEENALPVLQVPSLP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 743 HELLS::ZKSCAN5 ENSG00000119969.16::ENSG00000196652.12 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 124 TRUE 54 HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94576709:+ chr10:96305086-96373662:+ chr10:96336466:+ ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99512453:+ chr7:99102285-99132323:+ chr7:99110076:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SNF2-related_domain(19%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) ResIII(31%),SNF2-rel_dom(13%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 1 4 5 116 226 ENST00000698675.1 ENST00000326775.10 downstream upstream mismatches(1) TTCAGAGAGGAGTACCAGGACCTTTTCTTGTCTGTGGCCCTTTGTCTACACTTCCTAACTGGATGGCTGAATTCAAAAGATTTACACCAGAT___ATCCCTACAATGTTATATCATGGAACCCAGGAGGAACGTCAAAAATTG|ATTGTTGCCTGCCCTGATGTGCTTCCTCGGAAGATGGCAACACCTGGAGCAGTGCAGGAGTCCTGCAGCCCCCATCCCCTGACCGTGGACACCCAGCCTGAGCAAGCGCCACAGAAGCCTCGTCTCCTGGAGGAAAATG___CCCTTCCTGTTCTCCAAGTTCCTTCCCTTCCCCTGAAGGACAGCCAGGAGCTGACAGC QRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKL|IVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQKPRLLEENALPVLQVPSLPLKDSQELT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 744 ZKSCAN5::HELLS ENSG00000196652.12::ENSG00000119969.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 125 TRUE 55 ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99506458:+ chr7:99102285-99132323:+ chr7:99104081:+ HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94581326:+ chr10:96305086-96373662:+ chr10:96341083:+ chr7:99509612,chr7:99509469,chr7:99509610,chr7:99509469 chr10:94580258,chr10:94580289,chr10:94580253,chr10:94580286 NA NA chr7:99107235,chr7:99107092,chr7:99107233,chr7:99107092 chr10:96340015,chr10:96340046,chr10:96340010,chr10:96340043 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SCAN_domain(100%)|Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(72%) SCAN(100%)|HDA2-3(100%),Helicase_C(100%),ResIII(1%),SNF2-rel_dom(58%) 4 2 4 180 46 ENST00000454175.1 ENST00000419900.6 downstream upstream low_entropy(1) CAGTAGGTTGCATGCTACTGAAAGTGTCCTTCAGAAGATATTAAAGAGCAGAAAAACAATTGTTTCAGTGTAACACAGCCAGCCTCGAAGACTTCCCTCTG...CCAGGAGCAGGAAGACCTTTTCATAGTGAAGGTGGAAGAAGAAGACTGCACCTGGATGCAGGAGTACAACCCGCCAACGTTTGAGACTTTTTACCAGCGCT...CGGGAGGCTCTCAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGCTGCACACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAAGAGTTCCAGCCCTGGGTGAGGGAACATCACCCTGAAAGTGGAGAAGAGGCGGTGGCCGTGATAGAAAATATACAGCGAGAACTTGAGGAACGCAGACAGCAG|CATTGCTATTGGAAATACTTAATAGTAGATGAAGGACACAGGATTAAGAATATGAAGTGCCGTCTAATCAGGGAGTTAAAACGATTCAATGCcGATAACAAACTTCTTTTGACTGGTACTCCCTTGCAAAACAATTTATCAGAACTTTG...GTATTGCATATGCTGCACCAG___ATTTTAACACCTTTCTTATTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTTCCTCCTAAACGAGAAGTAGTCGTTTA REALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQ|HCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 745 ZKSCAN5::HELLS ENSG00000196652.12::ENSG00000119969.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 77 TRUE 125 TRUE 55 ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99506458:+ chr7:99102285-99132323:+ chr7:99104081:+ HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94588229:+ chr10:96305086-96373662:+ chr10:96347986:+ chr7:99509612,chr7:99509469,chr7:99509610,chr7:99509469 chr10:94580258,chr10:94580289,chr10:94580253,chr10:94580286 NA NA chr7:99107235,chr7:99107092,chr7:99107233,chr7:99107092 chr10:96340015,chr10:96340046,chr10:96340010,chr10:96340043 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SCAN_domain(100%)|Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(34%) SCAN(100%)|HDA2-3(100%),Helicase_C(100%),SNF2-rel_dom(15%) 0 5 3 180 122 ENST00000326775.10 ENST00000419900.6 downstream upstream mismatches(1) GAGGCTCTCAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGCTGCACACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAAGAGTTCCAGCCCTGGGTGAGGGAACATCACCCTGAAAGTGGAG...GCGGTGGCCGTGATAGAAAATATACAGCGAGAACTTGAGGAACGCAGACAGCAG|ATTTTAACACCTTTCTTATTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTTCCTCCTAAACGAGAAGTAGTCGTTTATGCTCCACTTTCAAAGAAGCAGGAGATCTTTTATACAGCCATTGTGAACCGTACAATTGCAAACATGTTTGGATCCAGTGAG...AAGAAACAATTGAGTTAAGTCCTACTGGTCGACCAAAACGACGAACTAGAAAATCAATAAATTACAGCAAAATAGATGATTTCCCTAATGAATTGGAAAAACTGATCAGTCAAATACAGCCAGAGGTGGACCGAG AVAVIENIQRELEERRQQ|ILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 746 ZKSCAN5::HELLS ENSG00000196652.12::ENSG00000119969.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 125 TRUE 55 ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99506458:+ chr7:99102285-99132323:+ chr7:99104081:+ HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94582963:+ chr10:96305086-96373662:+ chr10:96342720:+ chr7:99509612,chr7:99509469,chr7:99509610,chr7:99509469 chr10:94580258,chr10:94580289,chr10:94580253,chr10:94580286 NA NA chr7:99107235,chr7:99107092,chr7:99107233,chr7:99107092 chr10:96340015,chr10:96340046,chr10:96340010,chr10:96340043 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SCAN_domain(100%)|Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(55%) SCAN(100%)|HDA2-3(100%),Helicase_C(100%),SNF2-rel_dom(48%) 0 1 3 180 90 ENST00000326775.10 ENST00000698800.1 downstream upstream none GAGGCTCTCAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGCTGCACACGAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCTGAAGAGTTCCAGCCCTGGGTGAGGGAACATCACCCTGAAAGTGGAG...AGAAAATATACAGCGAGAACTTGAGGAACGCAGACAGCAG|CTTTGAGTCTTGGTTTGACATCACTAGTCTTTCTGAAACTGCTGAAGATATTATTGCTAAAGAAAGAGAACAGAATGTATTGCATATGCT ENIQRELEERRQQ|L* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 747 ZKSCAN5::HELLS ENSG00000196652.12::ENSG00000119969.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 125 TRUE 55 ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99504733:+ chr7:99102285-99132323:+ chr7:99102356:+ HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94588229:+ chr10:96305086-96373662:+ chr10:96347986:+ chr7:99509612,chr7:99509469,chr7:99509610,chr7:99509469 chr10:94580258,chr10:94580289,chr10:94580253,chr10:94580286 NA NA chr7:99107235,chr7:99107092,chr7:99107233,chr7:99107092 chr10:96340015,chr10:96340046,chr10:96340010,chr10:96340043 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(34%) |HDA2-3(100%),Helicase_C(100%),SNF2-rel_dom(15%) 1 0 0 29 122 ENST00000326775.10 ENST00000419900.6 downstream upstream none GGAAGCCCTGCGTAAGCAACGCCCCTCTCTTCAAAGGGATGCCCCGCTCCCTCCGCCCACTCCCAGCCTTCCAGCCTTGGCTCCCGAGGACACGACTCCGG...GCGGTGGTCAAGAG|ATTTTAACACCTTTCTTATTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTTCCTCCTAAACGAGAAGTAGTCGTTTATGCcCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 748 PRKCE::SNX17 ENSG00000171132.14::ENSG00000115234.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 78 TRUE 126 TRUE 56 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ SNX17 ENSG00000115234.11 protein_coding + + chr2:27370496-27377535:+ chr2:27371269:+ chr2:27593363-27600402:+ chr2:27594136:+ chr2:45709212,chr2:45709210 chr2:27370549,chr2:27370547 NA NA chr2:45936351,chr2:45936349 chr2:27593416,chr2:27593414 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none C2_domain(100%)|PX_domain(100%),Sorting_Nexin_17_FERM_C-terminal_domain(100%) C2(0%)|PX(100%),SNX17_FERM_C(100%) 4 3 5 64 580 ENST00000306156.8 ENST00000233575.7 downstream upstream mismatches(2) CCtGCCGCAGACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAAGACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCGCCACTTCGAGGACTGG|GCCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGGGTGCGCTACAGCCAGCTCCTGGGGCTGCACGAGCAG___CTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCCCCCAAAGAAGCTTTTCTCTCTGACTCCTGCTGAGGTAGAACAGAGGAGAGAGCAGTTAGAGAAG lPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW|AYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 749 PRKCE::SNX17 ENSG00000171132.14::ENSG00000115234.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 126 TRUE 56 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ SNX17 ENSG00000115234.11 protein_coding + + chr2:27370496-27377535:+ chr2:27372623:+ chr2:27593363-27600402:+ chr2:27595490:+ chr2:45709212,chr2:45709210 chr2:27370549,chr2:27370547 NA NA chr2:45936351,chr2:45936349 chr2:27593416,chr2:27593414 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none C2_domain(100%)|PX_domain(78%),Sorting_Nexin_17_FERM_C-terminal_domain(100%) C2(0%)|PX(33%),SNX17_FERM_C(100%) 1 1 2 64 640 ENST00000306156.8 ENST00000537606.5 downstream upstream mismatches(1) GCTCGGAGTGCCGGGCCGTCGGaTCTTCATTCCTGCCCTCGGGGCAGACGGAGTGACCCCGGCCCCCcCTCCCCcCCCCGACCATGGTAGcGTTCAATGGC...GCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCGCCACTTCGAGGACTGG|CTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCCCCCAAAGAAGCTTTTCTCTCTGACTCCTGCTGAGGTAGAACAGAGGAGAGAGCAGTTAGAGAAGTACATGCAAGCTG___TTCGGCAAGACCCATTGCTTGGGAGCAGCGAGACTTTCAACAGTTTCCTGCGTCGGGC PAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW|LRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 750 PRKCE::SNX17 ENSG00000171132.14::ENSG00000115234.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 126 TRUE 56 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45701524:+ chr2:45878484-46415129:+ chr2:45928663:+ SNX17 ENSG00000115234.11 protein_coding + + chr2:27370496-27377535:+ chr2:27373040:+ chr2:27593363-27600402:+ chr2:27595907:+ chr2:45709212,chr2:45709210 chr2:27370549,chr2:27370547 NA NA chr2:45936351,chr2:45936349 chr2:27593416,chr2:27593414 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none C2_domain(100%)|PX_domain(24%),Sorting_Nexin_17_FERM_C-terminal_domain(100%) C2(25%)|PX(12%),SNX17_FERM_C(100%) 1 0 1 6 88 ENST00000497602.1 ENST00000427123.5 downstream upstream none GGAGCCGCCACTTCGAGGACTGG___ACAGGGTGAATGGAAAGCAGCCCTTTGACAGAAGAAAGACAGAGACCAGTTTCCAGTGAGCTCCTGAGG___ATATTCAAG...AGAAGACAGAGCTTTAAAATGCAaGTGGGTAACAGTGACCTGAAGACATACTAACAG|TTCTATAGACTGGACTCACCTAGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 751 PRKCE::SNX17 ENSG00000171132.14::ENSG00000115234.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 126 TRUE 56 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45701524:+ chr2:45878484-46415129:+ chr2:45928663:+ SNX17 ENSG00000115234.11 protein_coding + + chr2:27370496-27377535:+ chr2:27375506:+ chr2:27593363-27600402:+ chr2:27598373:+ chr2:45709212,chr2:45709210 chr2:27370549,chr2:27370547 NA NA chr2:45936351,chr2:45936349 chr2:27593416,chr2:27593414 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none C2_domain(100%)|Sorting_Nexin_17_FERM_C-terminal_domain(100%) C2(25%)|SNX17_FERM_C(100%) 0 1 0 6 852 ENST00000497602.1 ENST00000537606.5 downstream upstream none GACCTGAAGACATACTAACAG|TTCCTGAGACTGGCCCAGACGCTGCGGCACTATGGCTACTTGCGCTTTGATGCCTGTGTGGCTGACTTCCCAGAAAAGGACTGTCCTGTGGTGGTGcGCGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 752 CEP350::SHC4 ENSG00000135837.17::ENSG00000185634.12 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP350 ENSG00000135837.17 protein_coding + + chr1:179954674-180114880:+ chr1:180065272:+ chr1:179923809-180084015:+ chr1:180034407:+ SHC4 ENSG00000185634.12 protein_coding - + chr15:48823741-48963919:- chr15:48936211:+ chr15:49115938-49256116:- chr15:49228408:+ chr1:180073187,chr1:180073188 chr15:48907313,chr15:48907311 NA NA chr1:180042322,chr1:180042323 chr15:49199510,chr15:49199508 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 5 2 2 60 9 ENST00000367607.8 unknown downstream upstream none GTTTGCTTTTAAGGTTGCAGCAAGAAAAG___GCAGAAATAAAACGTCTTCAAGAAGCCAATAAGGCAGCTCGGAAGGAAAGACAGCTGATTCTTAAACAGCAG...GAAAAGATCCGACAGACCACCATAAAACTACAGGAGAAATTGAAGTCTGCAGGGGAGAGTAAATTG___GACTCTCATAGTGATGATGATACAAAGGATAATAAGGCAACCAGTCCTGGTCCAACTGACTTGGAGACCCGCAGTCCTTCTCCCATTTCAATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAAGAAAATGAGAAGCCGCATGGATGAAAA|GTTTAAAAGCCTGAAAATCTGGATTTGTTCAGTCATTCACATTGGAGACTCAACAACCAGGAAATTTCAACCCT___GGTTCCTGCCCAAGTCAAAAGGCAGGGTTGTGAAGTGAGCAAAGCCTTTCACTTGGCCCAATCCATCTCCTTCGATGTCTTTCCCTGCTAAGTGGACTCCACCCCAGCAGATGGAGAGAGTCTC EKIRQTTIKLQEKLKSAGESKLDSHSDDDTKDNKATSPGPTDLETRSPSPISISSSETSSIMQKLKKMRSRMDEk|fkslkiwicsvihigdsttrkfqpwflpkskgrvvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 753 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 3 3 3 341 12 ENST00000641912.1 ENST00000501396.5 upstream downstream mismatches(1) CCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGC...CTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 754 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127187785:- chr8:128084939-128239786:- chr8:128200030:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 5 188 12 ENST00000641912.1 ENST00000501396.5 upstream downstream none GTTAGAACCCTGCTGGTACCACCTGCTTACT___GCATGCTTCTGATGTGAGTTCAGGAGAAGACACTGGCAAGGACAGCAAAGAACA...CCTGATAGCATTCAAGGTGCTGTCCAAA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 755 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127197475:- chr8:128084939-128239786:- chr8:128209720:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 5 103 12 ENST00000701231.1 ENST00000501396.5 upstream downstream none CTCAACAGTGAGTGCTGAGGCTGCACAGAGGAGGAAGGCAGCACAATGATGGAAGGCTTCaTAAAGAG|GcTTAATACAACATGGAAGCCACCAAGGCTTAC...CAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTcATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 756 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 5 112 12 ENST00000641991.1 ENST00000501396.5 upstream downstream none TGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 757 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 3 1 341 699 ENST00000641912.1 ENST00000502082.5 upstream downstream none GGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 758 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127174190:- chr8:128084939-128239786:- chr8:128186435:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 2 14 699 ENST00000641321.1 ENST00000502082.5 upstream downstream none TTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTCTTGAGTTTCT...TAATGAGTTAcTTACTATGGGTTATCACTTGGATTTGAAGAACCATCATTTCaAGGCATTGCTGCTCAGAGTG|GTTGCAAGAAAGCTCAAGTAGCCTATGG...CTGATCAgGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 759 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218815:- chr8:128084939-128239786:- chr8:128231060:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 2 341 12 ENST00000641174.1 ENST00000501396.5 upstream downstream none CCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 760 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 2 112 699 ENST00000641991.1 ENST00000502082.5 upstream downstream none CTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGAcGC...CTGATCAgGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 761 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127208608:- chr8:128084939-128239786:- chr8:128220853:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290062:- chr8:128302053-128494384:- chr8:128302307:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site intron duplication medium none none none 1 0 1 296 676 ENST00000500112.2 ENST00000502082.5 upstream downstream none CCTTCCTACTGCAGTCATTTAGATGACTCTATGCCATTCCATTCATTTCTCTTTCCTACCACAGAAGTGCTTTGAGATTTTGGAGTCAGACTGCTTGAACTTGAATCCTGGCCCTCTCATCAGAGACTTGACTTATTTT|AGGTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGG...CCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 762 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127187785:- chr8:128084939-128239786:- chr8:128200030:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 188 699 ENST00000641912.1 ENST00000502082.5 upstream downstream low_entropy(1) GTTCAGGAGAAGACACTGGCAAGGACAGCAAAGAACAGGAGAACACTCTAGCTTCCCTGATAGCATTCAAGGTGCTGTCCAAA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 763 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 127 TRUE 57 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127197475:- chr8:128084939-128239786:- chr8:128209720:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127165943 chr8:127347336 NA NA chr8:128178188 chr8:128359582 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 103 699 ENST00000701231.1 ENST00000502082.5 upstream downstream mismatches(1) CAGAGGAGGAAGGCAGCACAATGATGcAAGGCTTCCTAAAGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 770 ZFAND4::MEGF11 ENSG00000172671.20::ENSG00000157890.19 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 129 TRUE 58 ZFAND4 ENSG00000172671.20 protein_coding - - chr10:45615500-45672780:- chr10:45663542:- chr10:46110948-46168228:- chr10:46158990:- MEGF11 ENSG00000157890.19 protein_coding - - chr15:65895079-66253756:- chr15:66128411:- chr15:66187417-66546094:- chr15:66420749:- chr10:45660902,chr10:45660907 chr15:66174713,chr15:66174715 NA NA chr10:46156350,chr10:46156355 chr15:66467051,chr15:66467053 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site translocation high none Ubiquitin_family(44%)|Human_growth_factor-like_EGF(100%),Laminin_EGF_domain(100%) Ubiquitin_2(0%),ubiquitin(0%)|Laminin_EGF(100%),hEGF(100%) 3 0 2 63 9 ENST00000344646.10 ENST00000422354.6 upstream downstream duplicates(1),mismatches(2) TGGAGGAGCAACGGCTGCGCAGGTGACTCGGTGGCCTCAAGTGT___GTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCTGtTT...CTGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAG|GGCCCGGGATGGTGCTCTCCCTGACGGGGCTCATTGCCTTCTCCTTCCTGCAAGCCACCCTTGCCCTGAACCCCGAGGACCCCAACGTGTGCAGCCACTGGGAGAG___CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATC MDNRKEPPFFNDDNMGPFYYRLHFCDTMELFIETLTGTCFELRVSPFETVISVKAKIRRLE|gpgMVLSLTGLIAFSFLQATLALNPEDPNVCSHWESYAVTVQESYAHPFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 771 ZFAND4::MEGF11 ENSG00000172671.20::ENSG00000157890.19 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 129 TRUE 58 ZFAND4 ENSG00000172671.20 protein_coding - - chr10:45615500-45672780:- chr10:45663542:- chr10:46110948-46168228:- chr10:46158990:- MEGF11 ENSG00000157890.19 protein_coding - - chr15:65895079-66253756:- chr15:66119186:- chr15:66187417-66546094:- chr15:66411524:- chr10:45660902,chr10:45660907 chr15:66174713,chr15:66174715 NA NA chr10:46156350,chr10:46156355 chr15:66467051,chr15:66467053 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ubiquitin_family(44%)|Human_growth_factor-like_EGF(100%),Laminin_EGF_domain(100%) Ubiquitin_2(0%),ubiquitin(0%)|Laminin_EGF(100%),hEGF(100%) 1 0 1 63 12 ENST00000344646.10 ENST00000409699.6 upstream downstream none GTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAG|GATCAGTTATAAGACGGCGTATCGGAGAGGCCTCCGGACCATGTACCGGCGGAGGTCCCAGTGCTGCCCTGGCTACTATGAGAGCGGAGACTTCTGCATAC___CCCTGTGTACGGAGGAGTGTGTGCACGGCCGCTGCGTTTCCC MDNRKEPPFFNDDNMGPFYYRLHFCDTMELFIETLTGTCFELRVSPFETVISVKAKIRRLE|gsvirrrigeasgpctgggpsaalatmraetsaypcvrrsvctaaaf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 772 ZFAND4::MEGF11 ENSG00000172671.20::ENSG00000157890.19 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 129 TRUE 58 ZFAND4 ENSG00000172671.20 protein_coding - - chr10:45615500-45672780:- chr10:45663542:- chr10:46110948-46168228:- chr10:46158990:- MEGF11 ENSG00000157890.19 protein_coding - - chr15:65895079-66253756:- chr15:66124000:- chr15:66187417-66546094:- chr15:66416338:- chr10:45660902,chr10:45660907 chr15:66174713,chr15:66174715 NA NA chr10:46156350,chr10:46156355 chr15:66467051,chr15:66467053 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ubiquitin_family(44%)|Human_growth_factor-like_EGF(100%),Laminin_EGF_domain(100%) Ubiquitin_2(0%),ubiquitin(0%)|Laminin_EGF(100%),hEGF(100%) 1 0 1 63 9 ENST00000344646.10 ENST00000409699.6 upstream downstream mismatches(1) GTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCgGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAG|CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATCAGATCTATTACACACGATGCACAGgCATCCTCAACTGGTTCAAGTGCtCCAGGCACCG___GATCAGTTATAAG MDNRKEPPFFNDDNMGPFYYRLHFgDTMELFIETLTGTCFELRVSPFETVISVKAKIRRLE|aml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 778 IKBKB::ZMAT4 ENSG00000104365.16::ENSG00000165061.15 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA IKBKB ENSG00000104365.16 protein_coding + + chr8:42271302-42332460:+ chr8:42288728:+ chr8:42128820-42189978:+ chr8:42146246:+ ZMAT4 ENSG00000165061.15 protein_coding - + chr8:40530590-40897833:- chr8:40877427:+ chr8:40388109-40755352:- chr8:40734946:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(18%)| Kdo(0%),PK_Tyr_Ser-Thr(31%),Pkinase(27%)| 0 1 2 169 3 ENST00000520810.6 unknown downstream upstream none GGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAG___GAAACAGGTGAGCAGATTGCCATCAAGCAGTGCC...GCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGATCCAGATCATGAGAAG|GAAGGCTGGAACGATTGGCTGCTGAAAAAGGTGCCCTCTTGCTGAACTCTGCCCTCTGAAGACAGGAGCTAATTTAATTCAGCACCATGCCTGGACATAGTACGTACTTAG...___AGATGGGAATAGCTCGGCCC QELSPRNRERWCLEIQIMRr|kagtigc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Inhibitor of nuclear factor kappa-B kinase subunit beta Other IKK O14920 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 1 Yes SMZL leukaemia_lymphoma oncogene missense FALSE NA NA NA NA NA NA NA NA NA 779 YPEL2::SLC30A8 ENSG00000175155.11::ENSG00000164756.13 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA YPEL2 ENSG00000175155.11 protein_coding + + chr17:59331655-59401729:+ chr17:59367555:+ chr17:57409016-57479090:+ chr17:57444916:+ SLC30A8 ENSG00000164756.13 protein_coding + - chr8:116950273-117176714:+ chr8:117039061:- chr8:117962512-118188953:+ chr8:118051300:- NA NA chr17:59367559 chr8:117039060 NA NA chr17:57444920 chr8:118051299 sense antisense unknown intron intron translocation/5'-5' medium none Yippee_zinc-binding/DNA-binding_/Mis18__centromere_assembly(20%)| Yippee-Mis18(32%)| 2 5 5 11 6 unknown unknown downstream downstream mismatches(1) GCTGTTTGCAGTCTTGATTCCCTGTTTTTTGGGCTAGATCCAAAGGTCTGCAAAACTTTTTCTATAAAGGCCAGATAGTATTTTACGCTTTGCTGGACATAGGGTCTCCACTCAAATCTGCAGCCACAGAGAATATATAAACAAATGAGCATGGATGTTTTCCAGAAAAACTTTATTTGCAAAACAGGTGAAAGGCCCAATT|AGGTCAGAAATGAGAGTCTCCACGAGTATTTCTGCATCACTCTCCTGAATCTCTCTGCTGTTTCAGCTGGCACTGCCTTCCCTTCCTCCTTGGCAGTTCTACAGCCTTGACAACTGCACTTAGGCATCTAACAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4729 chr17:59366083-59366154:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 790 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 133 TRUE 59 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61727655:+ chr14:62162231-62214977:+ chr14:62194373:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61547743:+ chr14:61654277-62017694:+ chr14:62014461:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PAS_fold(43%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(10%) PAS(5%),PAS_11(0%),PAS_3(0%),PAS_9(53%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%),Pkinase_C(100%) 0 2 1 511 127 ENST00000337138.9 ENST00000332981.11 downstream upstream none GCtTGGATATGAAATTTTCTTATTGTGATGAAAG|TTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGGCGAGCACGCCATCTTGAGACATCCTTTTTTTAAGGAAATCGACTGGGCCCAGCTGAACCATCGCCAAATAGAACCGCCTTTCAGACCCAGAATC___AAATCCCGAG LDMKFSYCDEs|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 791 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 133 TRUE 59 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61726818:+ chr14:62162231-62214977:+ chr14:62193536:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61547743:+ chr14:61654277-62017694:+ chr14:62014461:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none PAS_fold(39%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(10%) PAS(4%),PAS_9(53%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%),Pkinase_C(100%) 0 1 1 922 127 ENST00000337138.9 ENST00000332981.11 downstream upstream none GAAATGCTTACACACAGAAATG___GCCTTGTGAAAAAGGGTAAAGAACAAAACACACAGCGAAGCTTTTTTCTCAGAATGAAGTGTACCCTAACTAGCCGAGG...CTATGAACATAAAGTCTGCAACATGGAAG|TTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGGCGAGCACGCCATCTTGAGACATCCTTTTTTTAAGGAAATCGACTGGGCCCAGCTGAACCATCGCCAAATAGAACCGCCTTTCAGACCCAG...TGACTTCATAAAGGAAGAGCCAGTTTTAACTCCAATTGATGAGGGACATCTTCCAATGATTAACCAGGATGAGTTTAGAAACTTTTCCTATGTGTCTCCAG MNIKSATWK|FMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 795 ENSG00000207751::PPIL2 ENSG00000207751.4::ENSG00000100023.20 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 134 TRUE 60 ENSG00000207751 ENSG00000207751.4 lncRNA + + chr22:21652184-21670237:+ chr22:21654167:+ chr22:22006473-22024526:+ chr22:22008456:+ PPIL2 ENSG00000100023.20 protein_coding + + chr22:21666000-21700015:+ chr22:21693816:+ chr22:22020289-22054304:+ chr22:22048105:+ chr22:21655682 chr22:21692446 NA NA chr22:22009971 chr22:22046735 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(34%) |Pro_isomerase(12%) 3 3 1 19 181 ENST00000498589.1 ENST00000335025.12 downstream upstream none AAGGGCATCGGTCAGGTCCAGCCTGCTACCCTGGGAGGGGGAAAGGGAGCTTGCTGCCTCACTCCACTTTCCAGTTGAGAAGGTTGAGGTGCCCAGAGG...TAACATTCCAACCGTCCCAGCTGGAATACAGGGTTGGAGCTGAACTTCCAAGGAGCCTGACCCCAGGCATGCTTGGATGACCACCTCTACCATCAAGACCTGACACGGTGCAAAAG|CTTCATCACGTTTCGCTCCTGTGCCTACCTGGACAAGAAGCATACCATCTTTGGACG___GGTTGTTGGGGGCTTTGACGTACTGACAGCCATGGAGAATGTGGAGAGTGACCCCAAAACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-301b,hsa-mir-130b chr22:21652981-21653058:+,chr22:21653304-21653385:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 796 ENSG00000207751::PPIL2 ENSG00000207751.4::ENSG00000100023.20 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 134 TRUE 60 ENSG00000207751 ENSG00000207751.4 lncRNA + + chr22:21652184-21670237:+ chr22:21654167:+ chr22:22006473-22024526:+ chr22:22008456:+ PPIL2 ENSG00000100023.20 protein_coding + + chr22:21666000-21700015:+ chr22:21694593:+ chr22:22020289-22054304:+ chr22:22048882:+ chr22:21655682 chr22:21692446 NA NA chr22:22009971 chr22:22046735 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(21%) |Pro_isomerase(2%) 1 0 1 19 146 ENST00000701082.1 ENST00000335025.12 downstream upstream none CGGGGACCCGGGGGCAGACGATGGCCGGGATCCTCTTCCGTCTAACCCTCCGCGTCCTGACCGGGCCCTGGGCGGAAGGGATGTCTGC___GCCGCTGGGAAGC...CTGGAATACAGGGaTGGAGCTGAACTTCCAAGGAGCCTGACCCCAGGaATGCTTGGATGACCACCTCTACCATCAAGACCTGACACGGTGCAAAAG|GGTTGTTGGGGGCTTTGACGTACTGACAGCCATGGAGAATGTGGAGAGTGACCCCAAAACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-301b,hsa-mir-130b chr22:21652981-21653058:+,chr22:21653304-21653385:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 801 HIF1A::ENSG00000258989 ENSG00000100644.17::ENSG00000258989.1 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61727655:+ chr14:62162231-62214977:+ chr14:62194373:+ ENSG00000258989 ENSG00000258989.1 protein_coding + + chr14:61529128-61657964:+ chr14:61547743:+ chr14:61995846-62124682:+ chr14:62014461:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PAS_fold(43%)| PAS(5%),PAS_11(0%),PAS_3(0%),PAS_9(53%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%),Pkinase_C(100%) 0 2 1 511 127 ENST00000337138.9 ENST00000556347.1 downstream upstream none GCtTGGATATGAAATTTTCTTATTGTGATGAAAG|TTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGGCGAGCACGCCATCTTGAGACATCCTTTTTTTAAGGAAATCGACTGGGCCCAGCTGAACCATCGCCAAATAGAACCGCCTTTCAGACCCAGAATC___AAATCCCGAG LDMKFSYCDEs|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 810 MTAP::LINGO2 ENSG00000099810.21::ENSG00000174482.11 CAS1 SRR8615249 SRR8639192 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ LINGO2 ENSG00000174482.11 protein_coding - + chr9:27937617-29213601:- chr9:28163729:+ chr9:27937615-29213599:- chr9:28163727:+ chr9:21856609,chr9:21856609,chr9:21856610 chr9:28144502,chr9:28144504,chr9:28144500 NA NA chr9:21856608,chr9:21856608,chr9:21856609 chr9:28144500,chr9:28144502,chr9:28144498 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 29 33 95 314 213 ENST00000644715.2 unknown downstream upstream duplicates(29),mismatches(14),multimappers(1) TATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGtACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|ATGACACGGTCTGTTTGATTCAATAAGCATCACCACACACCCCACATCTACAGCCCAATTTTCTGCCTAAACGAGATCCAACTTGCCTATTTACAGTTCACTGGACTTAGTTAAAGCTCTAATAACAATTGTTCAAATGATTTAACTTCATGATGTAACCAGAAACTCTTCTGCAATAGCCCAGAATTAAAATATCTTTTGGCCCTGGCTTGTAACATTGATCAAG IPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|mtrsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 811 UBXN8::ENSG00000253961 ENSG00000104691.16::ENSG00000253961.1 CAS1 SRR8615249 SRR8639192 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBXN8 ENSG00000104691.16 protein_coding + + chr8:30729131-30767006:+ chr8:30756887:+ chr8:30586648-30624522:+ chr8:30614404:+ ENSG00000253961 ENSG00000253961.1 lncRNA - - chr8:31167078-31177167:- chr8:31171318:- chr8:31024594-31034683:- chr8:31028834:- chr8:30759078,chr8:30759079 chr8:31171533,chr8:31171532 NA NA chr8:30616595,chr8:30616596 chr8:31029049,chr8:31029048 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none RNase_H(100%)| 6 6 6 126 12 ENST00000620074.5 ENST00000523365.1 downstream downstream duplicates(4) GCAGATACATAGAGAATGTTTTAAAACCTCACCAGGAAATGAAATTGAGAAAACTGGAGGAGCGCTTTTATCAAATGACGGGTGAAGCCTGGAAATTAAGCAGTGGTCACAAACTTGGG___GGTGATGAAGGTACAAGTCAGACATCTTTTGAAACATCAAACAGAGAAGCAGCAAAGAGCCAGAACTTGCCTAAACCTTTAACTGAATTTCCGTCTCCTGCTGAACAGCCCACATGCAAGGAG|GTTCCTTGTAGATTCTGGATATTGGGCCTTTGTCAGATGCATAGATTGCAAAAATTTTCTCCCACTCTGCCAAAAGAGGAGTACATCTGAACAGCAATAGAGCAGAGGAAGAAACCCTAAGTCATGTTGTAGCCTAATACCATGGAGTAGCACAGACTTTGAAACCAGGCAGAACCAG RYIENVLKPHQEMKLRKLEERFYQMTGEAWKLSSGHKLGGDEGTSQTSFETSNREAAKSQNLPKPLTEFPSPAEQPTCKE|vpcrfwilglcqmhrlqkfsptlpkeeyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 812 WRN::UBXN8 ENSG00000165392.11::ENSG00000104691.16 CAS1 SRR8615249 SRR8639192 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WRN ENSG00000165392.11 protein_coding + + chr8:31033788-31176138:+ chr8:31167230:+ chr8:30891304-31033654:+ chr8:31024746:+ UBXN8 ENSG00000104691.16 protein_coding + - chr8:30729131-30767006:+ chr8:30744542:- chr8:30586648-30624522:+ chr8:30602059:- chr8:31171532,chr8:31171533 chr8:30759079,chr8:30759078 NA NA chr8:31029048,chr8:31029049 chr8:30616596,chr8:30616595 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none 3'-5'_exonuclease(100%),DEAD/DEAH_box_helicase(100%),HRDC_domain(100%),Helicase_conserved_C-terminal_domain(100%),Helix-turn-helix_domain(100%),RQC_domain(100%),RecQ_zinc-binding(100%)| DEAD(100%),DNA_pol_A_exo1(100%),HRDC(100%),HTH_40(100%),Helicase_C(100%),RQC(100%),RecQ_Zn_bind(100%)| 1 4 2 63 9 ENST00000298139.7 unknown downstream downstream duplicates(1),mismatches(1) GTCAACTCAG___ATATGAGTAAAATTAGCCTAATCAGAATGTTAGTTCCTGAAAACATTGACACGTACCTTATCCACATGGCAATTGAGATCCTTAAACATGGTCCTGACAGCGGACTTCAACCTTCAcGTGATGTCAACAAAAGGAGATGTTTTCCCGGTTCTGAAGAGATCTGTTCAAGTTCTAAGAGAAGCAAGGAAGAAGTAGGCATCAATACTGAG|TGTTCGCCAGGATGCGAAAGCACTGTCTATGATTGCCCCTGTGCTCTTTGCCTCTACCCTCTTACACGTAAAACCATCACACCTGGAGGGAAAAGGTTCCTCGAAGTGAAGTCAGCTCCGGAAGTGGGGGGGCAGGGGCGATGCAGTCTGGGAGTTG...AGtTaCTCCGAAGCCACGCAGCCGAAGAGGCGGTCGTTCTATGCAACATTCCTGTGAAAATTACCCAGCTGTGACTGTCGAAGGGAAAAAaTCACACTTACCTATATCCGGGATCCCACGCCGGAGCTCCAGACACACAAGGG VNSDMSKISLIRMLVPENIDTYLIHMAIEILKHGPDSGLQPSrDVNKRRCFPGSEEICSSSKRSKEEVGINTE|cspgcestvydcpcalclypltrktitpggkrflevksapevggqgrcslgv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Werner syndrome (RECQL2) 1 osteosarcoma, meningioma, other tumour types Werner syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 816 MLLT3::DENND4C ENSG00000171843.17::ENSG00000137145.21 CAS1 SRR8615249 SRR8639192 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20620654:- chr9:20341667-20622498:- chr9:20620653:- DENND4C ENSG00000137145.21 protein_coding + + chr9:19230435-19374281:+ chr9:19350702:+ chr9:19230433-19374279:+ chr9:19350700:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none YEATS_family(45%)| YEATS(0%)| 1 0 1 23 53 ENST00000380338.9 ENST00000434457.7 upstream upstream duplicates(2) CTCCGGGCCCCCAGGCATGGCTAGCTCG___TGTGCCGTGCAGGTGAAGCTGGAGCTGGGGCACCGCGCCCAGGTGAGGAAAAAACCCACCGTGGAGGGCTTCACCCACGACTGG...CGGAGCACAGTAACATACAGCACTTTGTGGAGAAAGTCGTCTTCCACTTGCACGAAAGCTTTCCTAGGCCAAAAAGAG|GAAGAAACTAATAGAGACTACAG...GAGAATATATCGCCTAACACAAGTATCTCAGGGTTGGTCCCCAGTGAACTTACCCAGAGCAACACAAGTCTTGGCAGTAGCAGCAGTAGTGGAGATGTAGG EHSNIQHFVEKVVFHLHESFPRPKR|grn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 841 MTHFD1L::THBS2-AS1 ENSG00000120254.16::ENSG00000226445.2 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 142 TRUE 61 MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150972058:+ chr6:151186815-151423023:+ chr6:151293194:+ THBS2-AS1 ENSG00000226445.2 lncRNA + + chr6:169213254-169245773:+ chr6:169244920:+ chr6:169613349-169645868:+ chr6:169645015:+ chr6:150990248,chr6:150990248,chr6:150990238,chr6:150990248 chr6:169242641,chr6:169242762,chr6:169242611,chr6:169242638 NA NA chr6:151311384,chr6:151311384,chr6:151311374,chr6:151311384 chr6:169642736,chr6:169642857,chr6:169642706,chr6:169642733 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Formate--tetrahydrofolate_ligase(56%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__NAD(P)-binding_domain(100%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__catalytic_domain(100%)| FTHFS(29%),THF_DHG_CYH(100%),THF_DHG_CYH_C(100%)| 70 23 80 573 141 ENST00000611279.4 ENST00000660724.1 downstream upstream duplicates(7),low_entropy(1),mismappers(1),mismatches(6) CGGCAG___GCGCAGTTTGACATCGCAGTGGCCAGCGAGATCATGGCGGTGCTGGCCCTGACGGACAGCCTCGCAGACATGAAGGCACGGCTGGGAAGGATGGTGGTGGCCAGTGACAAAAGCGGGCAGCCTGTGACAGCAGATGATTTG___GGGGTGACAGGTGCTTTGACAGTTTTGATGAAAGATGCAATAAAACCAAACCTGATGCAGACCCTGGAA___GGGACACCTGTGTTCGTGCATGCGGGCCCTTTTGCTAACATTGCTCACGGCAACTCTTCAGTGTTGGCTGATAAAATTGCCCTGAAACTGGTTGGTGAAGAAGGATTTGTAG|GACGTGCACAAGGACCCGGACCTGCAAAGTGTAACTGAAGAGTGGGCTACGCACCCCGGTTCTGAAGTAGGCGGTGGGATCACAGAGTCATTGTGCACCAAAGATACCAAATCTCACATATTCCTGATGTATAGATTCATGACATAACAGTTTACGCTTGTCATAATTTGGAATTGAAATGGCCTGGCCTTCGTGTGCACACGGCCACACCGTGTGGCAGACGTGAGCTCCGCTTTGAGGCTGTCAGACAGACCCAGGCAGCAGCCCTGCTCCCTGCTCACTGGGGAGCTCAACATGGC RQAQFDIAVASEIMAVLALTDSLADMKARLGRMVVASDKSGQPVTADDLGVTGALTVLMKDAIKPNLMQTLEGTPVFVHAGPFANIAHGNSSVLADKIALKLVGEEGFV|graqgpgpakcn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 842 MTHFD1L::THBS2-AS1 ENSG00000120254.16::ENSG00000226445.2 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 142 TRUE 61 MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150985208:+ chr6:151186815-151423023:+ chr6:151306344:+ THBS2-AS1 ENSG00000226445.2 lncRNA + + chr6:169213254-169245773:+ chr6:169244920:+ chr6:169613349-169645868:+ chr6:169645015:+ chr6:150990248,chr6:150990248,chr6:150990238,chr6:150990248 chr6:169242641,chr6:169242762,chr6:169242611,chr6:169242638 NA NA chr6:151311384,chr6:151311384,chr6:151311374,chr6:151311384 chr6:169642736,chr6:169642857,chr6:169642706,chr6:169642733 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none Formate--tetrahydrofolate_ligase(56%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__NAD(P)-binding_domain(100%),Tetrahydrofolate_dehydrogenase/cyclohydrolase__catalytic_domain(100%)| FTHFS(36%),THF_DHG_CYH(100%),THF_DHG_CYH_C(100%)| 2 4 85 15 141 ENST00000478643.1 ENST00000660724.1 downstream upstream duplicates(6),low_entropy(1),mismappers(1),mismatches(3) GTTCGTGCATGCGGGCCCTTTTGCTAACATTGCTCACGGCAACTCTTCAGTGTTGGCTGATAAAATTGCCCTGAAACTGGTTGGTGAAGAAGGATTTGTAG___GCTTGTTCTAGGCATGAAGTGCAGTGATGATGGAGAAGGCATGGACTGTGGCACAAATAGAAGAGTCAGGGGTTGGCAGCTCCTATTCCCACTGTACGATGCCAAGGATCTTTACCTATAGGATAAGCCTTCAGAAACATAATTTGtTCTTTCAAGTGCTGAATACCTCT|GACGTGCACAAGGACCCGGACCTGCAAAGTGTAACTGAAGAGTGGGCTACGCACCCCGGTTCTGAAGTAGGCGGTGGGATCACAGAGTCATTGTGCACCAAAGATACCAAATCTCACATATTCCTGATGTATAGATTCATGACATAACAGTTTACGCTTGTCATAATTTGGAATTGAAATGGCCTGGCCTTCGTGTGCACACGGCCACACCGTGTGGCAGACGTGAGCTCCGCTTTGAGGCTGTCAGACAGACCCAGGCAGCAGCCCTGCTCCCTGCTCACTGGGGAGCTCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 843 DMTN::NPM2 ENSG00000158856.19::ENSG00000158806.14 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 143 TRUE 62 DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22080461:+ chr8:21906506-21940038:+ chr8:21937972:+ NPM2 ENSG00000158806.14 protein_coding + + chr8:22024125-22036897:+ chr8:22033123:+ chr8:21881636-21894408:+ chr8:21890634:+ chr8:22080843,chr8:22080842 chr8:22027775,chr8:22027771 NA NA chr8:21938354,chr8:21938353 chr8:21885286,chr8:21885282 NA NA sense sense out-of-frame intron exon duplication high none Putative_adherens-junction_anchoring_region_of_AbLIM(84%)|Nucleoplasmin/nucleophosmin_domain(28%) AbLIM_anchor(94%)|Nucleoplasmin(1%) 19 26 61 215 125 ENST00000381470.7 ENST00000522953.5 downstream upstream duplicates(11),low_entropy(2),mismatches(6) GAGCAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGAGAGGAGATGAAGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAG___GTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCCATACCT___CCTTGCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGG___CTACAGTCCACAGAGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAGG|CCTGCAGGTCTCCATGGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGACCCGTGTTCCTCAGTGGCCAGGAACGTTATG___AAGCATCAGACCTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGAGGAAGAGGAAGAGGAAGATGATGAGGATGAGGATGCAGATATATCTCTGGAGGAGCAAAGCCCTGTCAAACAAGTCAAAAGGCTGGTGCCCCAGAAG AEEEEEEEDDDSGEEMKALRERQREELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSSLPAYGRTTLSRLQSTEFSPSGSETGSPg|lqvsmvgvqlsppvtfqlragsgpvflsgqeryeasdltweeeeeeegeeeeeeeeddededadisleeqspvkqvkrlvpq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 844 DMTN::NPM2 ENSG00000158856.19::ENSG00000158806.14 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 143 TRUE 62 DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22080460:+ chr8:21906506-21940038:+ chr8:21937971:+ NPM2 ENSG00000158806.14 protein_coding + + chr8:22024125-22036897:+ chr8:22033130:+ chr8:21881636-21894408:+ chr8:21890641:+ chr8:22080843,chr8:22080842 chr8:22027775,chr8:22027771 NA NA chr8:21938354,chr8:21938353 chr8:21885286,chr8:21885282 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Putative_adherens-junction_anchoring_region_of_AbLIM(84%)|Nucleoplasmin/nucleophosmin_domain(28%) AbLIM_anchor(94%)|Nucleoplasmin(1%) 2 1 55 260 125 ENST00000381470.7 ENST00000518119.6 downstream upstream duplicates(8),mismatches(3) CCGGACACCCTTCCATACCT___CCTTGCACCAGGGAACGTCTAAATCTTCCTCTCTCCCCGCCTATGGCAGGACCACCCTGAGCCGG___CTACAGTCCACAGAGTTCAGCCCATCAGGGAGTGAGACTGGAAGCCCAG|GTCTCCATGGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGACCCGTGTTCCTCAGTGGCCAGGAACGTTATG___AAGCATCAGACCTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGAGGAAGAGGAAGAGGAAGATGATGAGGATGAG RTPFHTSLHQGTSKSSSLPAYGRTTLSRLQSTEFSPSGSETGSP|glhgrsaafspsyfpapgwlrtrvpqwpgtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 845 DMTN::NPM2 ENSG00000158856.19::ENSG00000158806.14 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 143 TRUE 62 DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22073835:+ chr8:21906506-21940038:+ chr8:21931346:+ NPM2 ENSG00000158806.14 protein_coding + + chr8:22024125-22036897:+ chr8:22033130:+ chr8:21881636-21894408:+ chr8:21890641:+ chr8:22080843,chr8:22080842 chr8:22027775,chr8:22027771 NA NA chr8:21938354,chr8:21938353 chr8:21885286,chr8:21885282 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Putative_adherens-junction_anchoring_region_of_AbLIM(74%)|Nucleoplasmin/nucleophosmin_domain(28%) AbLIM_anchor(45%)|Nucleoplasmin(1%) 0 1 28 320 125 ENST00000381470.7 ENST00000518119.6 downstream upstream duplicates(5),mismatches(3) CAGAGGAAGAGGAGGAGGAGGAAGATGACGACTCTGGAGAGGAGATGAAGGCTCTCAGGGAGCGTCAGAGAGAGGAACTCAGTAAG___GTTACTTCCAACTTGGGAAAGATGATCTTGAAAGAAGAGATGGAAAAGTCATTGCCGATCCGAAGGAAAACCCGCTCTCTGCCTGACCGGACACCCTTCCATACCT|GTCTCCATGGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGACCCGTGTTCCTCAGTGGCCAGGAACGTTATG___AAGCATCAGACCTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGAGGAAGAGGAAGAGGAAGATGATGAGGATGAGGATGCAG EEEEEEEDDDSGEEMKALRERQREELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHT|clhgrsaafspsyfpapgwlrtrvpqwpgtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 851 PPM1L::KALRN ENSG00000163590.14::ENSG00000160145.16 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPM1L ENSG00000163590.14 protein_coding + + chr3:160755602-161078902:+ chr3:160756707:+ chr3:160473390-160796690:+ chr3:160474495:+ KALRN ENSG00000160145.16 protein_coding + - chr3:124033369-124726325:+ chr3:124439920:- chr3:123752216-124445172:+ chr3:124158767:- chr3:160843448,chr3:160843476,chr3:160843428,chr3:160843427 chr3:124495953,chr3:124495950,chr3:124495965,chr3:124495965 NA NA chr3:160561236,chr3:160561264,chr3:160561216,chr3:160561215 chr3:124214800,chr3:124214797,chr3:124214812,chr3:124214812 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_phosphatase_2C(15%)| PP2C(0%),PP2C_2(0%)| 1 0 8 37 1 ENST00000498165.6 unknown downstream downstream none GTGAAGTCCAGCCGGGACGCCGTGAAGATGGTGAAGGGCAAGGTAGCCGAGATCATGCAGAACGATCGACTCGGGGGGCTTGATGTGCTCGAGGCCGAGTTTTCCAAGACCTGGGAGTTCAAGAACCACAACGTGGCGGTGTACTCCATCCAGGGCCGGAGAGACCACATGGAGGACCGCTTCGAAGTTCTCACGGATCTGGCCAACAAGACGCACCCGTCCATCTTCGGGATCTTCGACGGGCACGGGGGAGAG|AAACCTGAGAGGAAGCAGAACATGAAAGCAAGAAATCTGAGAGCAAATGCAGCCTTTAGATGAGCTTGAACACAGAAGAGAGGCGATCAGAGGAGAAGATCAAAGGCTGGGGAAGGAGGCTCACAAGGACTTCCCACACCAGCTGACAGTCTGTGCAGAGCAGGCCTGTGCTTC...TCAGAAGGCAGGGCTCTAGCAGAATATTAGGAATAAGGCATTTCTCTCTTAATACAGAAGAATGAACAGTGTCATGTGTGTTGGTAATTGGTAATTGCTAGATTGATAAATAAATAG VKSSRDAVKMVKGKVAEIMQNDRLGGLDVLEAEFSKTWEFKNHNVAVYSIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGE|kperkqnmkarnlranaafr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 864 OR6J1::ENSG00000280828 ENSG00000255804.2::ENSG00000280828.1 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA OR6J1 ENSG00000255804.2 protein_coding - + chr14:22630929-22644352:- chr14:22637117:+ chr14:23099834-23113561:- chr14:23105850:+ ENSG00000280828 ENSG00000280828.1 unprocessed_pseudogene + + chr7:128533652-128615970:+ chr7:128577953:+ chr7:128173706-128256024:+ chr7:128218007:+ NA NA NA NA NA NA NA NA antisense sense unknown intron intron translocation/3'-3' medium none none none 0 1 1 5 95 unknown ENST00000479267.2 downstream upstream mismappers(1) CTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAACCCTGTCTGgGAG|GTATTTAACAGACTCCCaACAAAAAGCAGAATGATCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG___GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG___TTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 865 OR6J1::ENSG00000242588 ENSG00000255804.2::ENSG00000242588.7 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA OR6J1 ENSG00000255804.2 protein_coding - + chr14:22630929-22644352:- chr14:22637117:+ chr14:23099834-23113561:- chr14:23105850:+ ENSG00000242588 ENSG00000242588.7 lncRNA + + chr7:128531707-128663479:+ chr7:128577953:+ chr7:128171761-128303533:+ chr7:128218007:+ NA NA NA NA NA NA NA NA antisense sense unknown intron intron translocation/3'-3' medium none none none 0 1 1 5 95 unknown ENST00000605862.6 downstream upstream mismappers(1) CTCTGCCCGGCCGCCCATGTCTGAGATGTGGGGAGCACCTCTGCCCCGCCGCCCTGTCTGGGATGTGAGGAGCGCCTCTGCTGGCCGCAACCCTGTCTGgGAG|GTATTTAACAGACTCCCaACAAAAAGCAGAATGATCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG___GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG___TTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 886 LDLR::SMARCA4 ENSG00000130164.15::ENSG00000127616.22 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 82 TRUE 148 TRUE 63 LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11113762:+ chr19:11200094-11244496:+ chr19:11224438:+ SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11058258:+ chr19:11071608-11190102:+ chr19:11168934:+ chr19:11115319,chr19:11115320 chr19:11054110,chr19:11054108 NA NA chr19:11225995,chr19:11225996 chr19:11164786,chr19:11164784 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(44%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(40%)|Bromodomain(97%) EGF_CA(100%),FXa_inhibition(63%),Ldl_recept_a(100%),Ldl_recept_b(9%),cEGF(100%),hEGF(100%),zf-NF-X1(100%)|Bromodomain(8%) 154 300 300 998 3324 ENST00000559340.2 ENST00000645460.1 downstream upstream duplicates(238),mismatches(44) CCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAG___CACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCAGCAGgGACATCCAGGCCCCCGACGGGCTGGCTGTGGACTGGATCCACAGCAACATCTACTGGACCGACTCTGTCCTGGGCACTGTCTCTGTTGCGGATACCAAGGGCGTGAAGAGGAAAACGTTATTCAGGGAGAACGGCTCCAAGCCAAGGGCCATCGTGGTGGATCCTGTTCATGG|CAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAG___GAGCGCATTCGCAACCACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTG___ATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAG SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHg|SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 11234020 FALSE 11172460 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site 887 LDLR::SMARCA4 ENSG00000130164.15::ENSG00000127616.22 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 83 TRUE 148 TRUE 63 LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11113762:+ chr19:11200094-11244496:+ chr19:11224438:+ SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11058255:+ chr19:11071608-11190102:+ chr19:11168931:+ chr19:11115319,chr19:11115320 chr19:11054110,chr19:11054108 NA NA chr19:11225995,chr19:11225996 chr19:11164786,chr19:11164784 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(44%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(40%)|Bromodomain(97%) EGF_CA(100%),FXa_inhibition(63%),Ldl_recept_a(100%),Ldl_recept_b(9%),cEGF(100%),hEGF(100%),zf-NF-X1(100%)|Bromodomain(8%) 137 278 300 998 3324 ENST00000559340.2 ENST00000644737.1 downstream upstream duplicates(230),low_entropy(9),mismatches(40) GGCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAG___CACCCAGCTTGACAGAGCCCACGGCGTCTCTTCCTATGACACCGTCATCAGCAGgGACATCCAGGCCCCCGACGGGCTGGCTGTGGACTGGATCCACAGCAACATCTACTGGACCGACTCTGTCCTGGGCACTGTCTCTGTTGCGGATACCAAGGGCGTGAAGAGGAAAACGTTATTCAGGGAGAACGGCTCCAAGCCAAGGGCCATCGTGGTGGATCCTGTTCATGG|CAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAG___GAGCGCATTCGCAACCACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTG___ATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAG ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHg|SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 11234020 FALSE 11172460 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site 889 TLK1::PPM1F ENSG00000198586.14::ENSG00000100034.14 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 85 FALSE NA FALSE NA TLK1 ENSG00000198586.14 protein_coding - - chr2:170990823-171231314:- chr2:171160290:- chr2:171847333-172087824:- chr2:172016800:- PPM1F ENSG00000100034.14 protein_coding - - chr22:21919425-21952848:- chr22:21934226:- chr22:22273798-22307220:- chr22:22288598:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Protein_phosphatase_2C(100%) |PP2C(100%),PP2C_2(100%) 40 52 68 299 535 ENST00000431350.7 ENST00000263212.10 upstream downstream duplicates(76),low_entropy(5),mismatches(23) CCCAGCCCTCGCTCTCTCGCTCGCCCTCAGCGCGGCCCCCGCCATGACGGAGGCGGGTGCCGGTGCCGTTGCCGCCGCTGCCGTCGCAGGGGGGGAGTCGGGTTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCAGCTCTCCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG|TGCTGGATGCCCAAAGCCTGGCACAGAGTTTCTTTAACtGCCTTTGGGAAGTCGCCGGCCAGTGGCAGAAGCAGGTGCCATTGGCTGCCCGGGCCTCACAGCGGCAGTGGCTGGTCTCCATCCACGCCATCCGGAACACTCGCCGCAAGATGGAGGACCGGCACGTGTCCCTCCCTTCCTTCAACCAGCTCTTCGGCTTGTCT___GACCCTGTGAACCGCGCCTACTTTGCTGTGTTTGATGGTCACGGAGGCGTGGATGCTGCGAGGTACGCCGCTGT MSVQSSSGSLEGPPSWSQLSTSPTPGSAAAARSLLNHTPPSGRPRE|vLDAQSLAQSFFNcLWEVAGQWQKQVPLAARASQRQWLVSIHAIRNTRRKMEDRHVSLPSFNQLFGLSDPVNRAYFAVFDGHGGVDAARYAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 1 Other TLK Q9UKI8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 891 MFNG::CARD10 ENSG00000100060.18::ENSG00000100065.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 86 FALSE NA FALSE NA MFNG ENSG00000100060.18 protein_coding - - chr22:37469063-37486393:- chr22:37479345:- chr22:37865101-37882431:- chr22:37875383:- CARD10 ENSG00000100065.15 protein_coding - - chr22:37490362-37519542:- chr22:37510421:- chr22:37886400-37915549:- chr22:37906428:- chr22:37478941,chr22:37478943,chr22:37478946 chr22:37515320,chr22:37515319,chr22:37515322 NA NA chr22:37874979,chr22:37874981,chr22:37874984 chr22:37911327,chr22:37911326,chr22:37911329 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Fringe-like(55%)| Fringe(41%)| 16 19 23 65 173 ENST00000416983.7 ENST00000403299.5 upstream downstream duplicates(30),mismatches(8),multimappers(1) CCCAGCTCTGTCCTGCAAGATGGCTGCTGAGTTCGACACCTTCTTGGCCAGTGGGCTTAG___GTGGTTCTGCCATGTGGACGATGACAACTATGTGAACCCAAGGGCGCTGCTGCAGCTTCTGAGAGCCTTCCCGCTGGCCCGCGACGTCTATGTGGGAAGGCCCAGCCTGAACCGGCCCATCCATGCCTCAGAGCCACAGCCCCACAACCGCACG|GTGGATCAGCTCAAGCTCAAAGTGAGTCGGCTGGAGGAAGAGTGTGCACTGCTTCGAAGGGCCAGGGGCCCGCCCCCTGGGGCAGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGCCAGACAATGTGGACCTTGTCTCTGAGCTGCGTGCTGAGAACCAGCGGCTGACGGCGTCACTGCGGGAGTTGCAGGAGGGCCTGCAGCAG___GAGGCGAGCCGGCCGGGGGCCCCGGGCTCCGAGCGCATCCTGCTGGACATCCTAGAGCATGACTGGCGGGAGGCGCAG PALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNRT|VDQLKLKVSRLEEECALLRRARGPPPGAEEKEKEKEKEKEPDNVDLVSELRAENQRLTASLRELQEGLQQEASRPGAPGSERILLDILEHDWREA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 892 PAN3::PRSS53 ENSG00000152520.14::ENSG00000151006.8 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 87 TRUE 149 TRUE 64 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28220378:+ chr13:28712643-28869472:+ chr13:28794515:+ PRSS53 ENSG00000151006.8 protein_coding - - chr16:31083437-31089628:- chr16:31086491:- chr16:31094758-31100949:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Trypsin(71%) zf-CCCH_2(100%)|Trypsin(34%) 10 18 13 99 61 ENST00000380958.8 ENST00000280606.7 downstream downstream duplicates(15),inconsistently_clipped(1),mismatches(1) CAGGTGTAAATCAGGAGTACCCATCAATATGGTTTGGTG...AACAATTTACAG___ACACCAAATCCTACTGCAAGCGAGTTTATTCCTAAAGGAGGATCAACCTCCAGGCTGAGTAACGTGTCCCAGTCAAATATGTCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGCCCTGCTACTGCTGGATTAGCGCCAG|CTCCTGGGACCCTACGCAATCTGCGCCTGCGTCTCATCAGTCGCCCCACATGTAACTGTATCTACAACCAGCTGCACCAGCGACACCTGTCCAACCCGGCCCGGCCTGGGATGCTATGTGGGGGCCCCCAGCCTGGGGTGCAGGGCCCCTGTCAG___GGAGATTCCGGGGGCCCTGTGCTGTGCCTCGAGCCTGACGGACACTGGGTTCAGGCTGGCATCATCAGCTTTGCATCAAGCTGTGC NNLQTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAP|aPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGPQPGVQGPCQGDSGGPVLCLEPDGHWVQAGIISFASSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 893 PAN3::PRSS53 ENSG00000152520.14::ENSG00000151006.8 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 149 TRUE 64 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28177935:+ chr13:28712643-28869472:+ chr13:28752072:+ PRSS53 ENSG00000151006.8 protein_coding - - chr16:31083437-31089628:- chr16:31086491:- chr16:31094758-31100949:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Trypsin(71%) zf-CCCH_2(100%)|Trypsin(34%) 2 1 1 132 61 ENST00000380958.8 ENST00000280606.7 downstream downstream none GAATGGATGGAGGTGCTTTAACTGATACAAGTCTCACAGATTCCTATTTTAGCACCAGCTTTATTGGAGTCAATGGATTTGGAAGCCCTGTAGAAACAAAA...TAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAGCCATATTCAGCCCATG___ATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAG|CTCCTGGGACCCTACGCAATCTGCGCCTGCGTCTCATCAGTCGCCCCACATGTAACTGTATCTACAACCAGCTGCACCAGCGACACCTGTCCAACCCG SSSPSLLNDSAKPYSAHDPLTSPASSLFNDFGALNISQRRK|llgpyaicacvssvaphvtvsttsctsdtcpt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 897 RYR2::BRINP3 ENSG00000198626.18::ENSG00000162670.11 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 88 FALSE NA FALSE NA RYR2 ENSG00000198626.18 protein_coding + + chr1:237042184-237833988:+ chr1:237569319:+ chr1:237205484-237997288:+ chr1:237732619:+ BRINP3 ENSG00000162670.11 protein_coding - - chr1:190097658-190478404:- chr1:190160890:- chr1:190066788-190447534:- chr1:190130020:- chr1:237584373,chr1:237584366 chr1:190161162,chr1:190161169 NA NA chr1:237747673,chr1:237747666 chr1:190130292,chr1:190130299 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(100%),MIR_domain(100%),RIH_domain(47%),RyR_domain(50%),SPRY_domain(60%)|BMP/retinoic_acid-inducible_neural-specific_protein(99%) Ins145_P3_rec(100%),MIR(100%),RYDR_ITPR(77%),RyR(69%),SPRY(24%)|BRINP(49%) 6 6 23 43 30 ENST00000366574.7 ENST00000367462.5 downstream downstream duplicates(13) CGTGCCTTTGCCTTTGATGGCTTCAAG___GCCCAGCGGTGGCATCAGGGCAATGAACACTATGGGCGCTCTTGGCAAGCAGGCGATGTCGTGGGGTGTATGGTTGACATGAACGAACACACCATGATGTTCACACTGAATGGTGAAATCCTTCTTGATGATTCAGGCTCAGAACTGGCTTTCAAGGACTTTGATGTTGGCGATG|ATGAATTCAAGTTATTTATGAAAAGGCTACCTATGAATTATTTCCTCAACACATCTACTATAATGCATTTGTGGACAATGGATTCTAATTTTCAGCGCCGTTATGAACAACTGGAGAACAGCATGAAACAACTTTTCCTAAAGGCGCAGAAAATTGTACACAAGCTTTTTAGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCAAGACAAAG RAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGD|dEFKLFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4428 chr1:237471119-237471191:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 898 FLOT1::LINC00243 ENSG00000137312.15::ENSG00000214894.7 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 89 FALSE NA FALSE NA FLOT1 ENSG00000137312.15 protein_coding - - chr6:30727709-30742732:- chr6:30742527:- chr6:30695486-30710509:- chr6:30710304:- LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr6:30742300,chr6:30742302 chr6:30806931,chr6:30806930 NA NA chr6:30710077,chr6:30710079 chr6:30774708,chr6:30774707 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 6 12 15 429 177 ENST00000376389.8 ENST00000419357.6 upstream downstream duplicates(12) GCGGCAGGGTGGGGAACGCGGGAGCGGGGCCAGCTCCCAGGAAAGCTGGTCTGCGAGCGGCCCCTGCCCGGCTCCCAGGTCCCTGCGCGACCCCGCCCTTCCCGAGACCCCAGCCGGGCTGCCGCCCGCGTCCCGGAAG|GCCCTAGAAACAAGAACCAATCCAGCAGCAACAAGCATCTCTGGCAGTCTATCATTTCCCTTCAACTGAAATCAGATCTTCTTAAAGAAATGCTTGGCTCTCAGACTGGGAACGGAAATGTACAAGATGTGCTTCGATATCTGGTCAAATCAGAAACTCAAAAAGCTATCAAAGTCTCTTTGGACTGTGTCAGAAAGAGGTGAAAAGACTCCCACTTGCCAAAGACGGGACAATTTGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 902 PIAS1::DPP6 ENSG00000033800.14::ENSG00000130226.18 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 90 FALSE NA FALSE NA PIAS1 ENSG00000033800.14 protein_coding + + chr15:68054309-68198603:+ chr15:68176654:+ chr15:68346647-68490941:+ chr15:68468992:+ DPP6 ENSG00000130226.18 protein_coding + + chr7:153748133-154894285:+ chr7:154566842:+ chr7:153445218-154685995:+ chr7:154263927:+ chr15:68180773,chr15:68180772 chr7:154547677,chr7:154547659 NA NA chr15:68473111,chr15:68473110 chr7:154244762,chr7:154244744 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none MIZ/SP-RING_zinc_finger(100%),PINIT_domain(100%)|Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region(100%),Prolyl_oligopeptidase_family(100%) PINIT(100%),zf-MIZ(100%)|DPPIV_N(100%),PD40(100%),Peptidase_S9(100%) 4 6 13 94 24 ENST00000249636.11 ENST00000706130.1 downstream upstream duplicates(14),mismatches(1) CCTTACATGTTCTCATCTACAATGTTTTGACGCAACTCTTTACATTCAGATGAATGAGAAAAAACCAACCTGGGTTTGTCCTGTCTGTGATAAGAAGGCTCC...GGAGGATGGCACTTGGGCACCGATGAGATCAAAAAAGGAAGTACAGGAAGTTTCTGCCTCTTACAATGGAGTCGATG___GATGCTTGAGCTCCACATTGGAGCATCAGGTAGCGTCTCACCACCAGTCCTCAAATAAAAACAAGAAAGTAGAAGTGATTGACCTAACCATAGACAGTTCATCTGATGAAGAGGAAGAAGAGCCATCTGCCAAGAGGACCTGTCCTTCCCTATCTCCCACATCACCACTAAATAATAAAGG|GAATCATTAAGAGCCATCAGATATGAAATATCTCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCC___ATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCCTCATGG___GGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAgCTTCAGTATGCAGGATGGGGCCCTAAAGGCCAAC EDGTWAPMRSKKEVQEVSASYNGVDGCLSSTLEHQVASHHQSSNKNKKVEVIDLTIDSSSDEEEEEPSAKRTCPSLSPTSPLNNKg|nh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 903 PAN3::ENSG00000255439 ENSG00000152520.14::ENSG00000255439.6 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 151 TRUE 65 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28220378:+ chr13:28712643-28869472:+ chr13:28794515:+ ENSG00000255439 ENSG00000255439.6 protein_coding - - chr16:31083439-31094956:- chr16:31086491:- chr16:31094760-31106277:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none none zf-CCCH_2(100%)|Trypsin(31%) 10 9 4 99 61 ENST00000380958.8 ENST00000533518.5 downstream downstream duplicates(9),mismatches(1) GTTCCGATGGGATCAAAGGCACGAAAAGCAAAGAACCCTATTGGCTGCCTTGCTGACAGGTGTAAATCAGGAGTACCCATCAATATGGTTTGGTGGAACAGAGTCACAGAAAACAATTTACAG___ACACCAAATCCTACTGCAAGCGAGTTTATTCCTAAAGGAGGATCAACCTCCAGGCTGAGTAACGTGTCCCAGTCAAATATGTCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGCCCTGCTACTGCTGGATTAGCGCCAG|CTCCTGGGACCCTACGCAATCTGCGCCTGCGTCTCATCAGTCGCCCCACATGTAACTGTATCTACAACCAGCTGCACCAGCGACACCTGTCCAACCCGGCCCGGCCTGGGATGCTATGTGGGGGCCCCCAGCCTGGGGTGCAGGGCCCCTGTCAG...CGGACACTGGGTTCAGGCTGGCATCATCAGCTTTGCATCAAGCTGTGCCCAGGAGGACGCTCCTGTGCTGCTGACCAACACAGCTGCTCACAGTTCCTGGCT VPMGSKARKAKNPIGCLADRCKSGVPINMVWWNRVTENNLQTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAP|apgtlrnlrlrlisrptcnciynqlhqrhlsnparpgmlcggpqpgvqgpc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 904 PAN3::ENSG00000255439 ENSG00000152520.14::ENSG00000255439.6 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 151 TRUE 65 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28177935:+ chr13:28712643-28869472:+ chr13:28752072:+ ENSG00000255439 ENSG00000255439.6 protein_coding - - chr16:31083439-31094956:- chr16:31086491:- chr16:31094760-31106277:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none none zf-CCCH_2(100%)|Trypsin(31%) 2 1 1 132 61 ENST00000380958.8 ENST00000533518.5 downstream downstream none GAATGGATGGAGGTGCTTTAACTGATACAAGTCTCACAGATTCCTATTTTAGCACCAGCTTTATTGGAGTCAATGGATTTGGAAGCCCTGTAGAAACAAAA...TAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAGCCATATTCAGCCCATG___ATCCTCTAACATCACCTGCTTCATCCTTGTTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAG|CTCCTGGGACCCTACGCAATCTGCGCCTGCGTCTCATCAGTCGCCCCACATGTAACTGTATCTACAACCAGCTGCACCAGCGACACCTGTCCAACCCG SSSPSLLNDSAKPYSAHDPLTSPASSLFNDFGALNISQRRK|llgpyaicacvssvaphvtvsttsctsdtcpt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 906 STK4::YWHAB ENSG00000101109.13::ENSG00000166913.13 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK4 ENSG00000101109.13 protein_coding + + chr20:44966494-45080021:+ chr20:45001353:+ chr20:43595135-43708662:+ chr20:43629994:+ YWHAB ENSG00000166913.13 protein_coding + + chr20:44885702-44908532:+ chr20:44901531:+ chr20:43514343-43537173:+ chr20:43530172:+ chr20:45012318,chr20:45012317 chr20:44892220,chr20:44892216 NA NA chr20:43640959,chr20:43640958 chr20:43520861,chr20:43520857 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Protein_kinase_domain(100%)|14-3-3_protein(100%) ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_fungal(100%)|14-3-3(100%) 5 6 10 191 950 ENST00000372806.8 ENST00000353703.9 downstream upstream duplicates(6),mismatches(4) AGCAGTGGGTGATGAGATGGGCACTGTCCGAGTAGCCAGCACCATGACTGATGGAGCCAATACTATGATTGAGCACGATGACACGTTGCCATCACAACTGGGCACCATGGTGATCAATGCAGAGGATGAGGAAGAGGAAGGAACTATGAAAA|GGAATGACAATGGATAAAAGTGAGCTGGTACAGAAAGCCAAACTCGCTGAGCAGGCTGAGCGcTATGATGATATGGCTGCAGCCATGAAGGCAGTCACAGAACAGGGGCATGAACTCTCCAACGAAGAGAGAA?TCTGCTCTCTGTTGCC?AaAAGAATGTGGTAGGC?CCCGCCGCTCTTCCTGGCGTGTCATCTCCAGCATTGAGCAGAAAACAGAGAGGAATGAGAAGAAGCAGCAGATGGGCAAAGAGTACCGTGAGAAG AVGDEMGTVRVASTMTDGANTMIEHDDTLPSQLGTMVINAEDEEEEGTMK|rndng* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 4 STE STE20 MST Q13043 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 907 ADCY1::HECW1 ENSG00000164742.16::ENSG00000002746.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 91 TRUE 152 TRUE 66 ADCY1 ENSG00000164742.16 protein_coding + + chr7:45574140-45723116:+ chr7:45610497:+ chr7:45613739-45762715:+ chr7:45650096:+ HECW1 ENSG00000002746.15 protein_coding + + chr7:43112629-43566001:+ chr7:43541163:+ chr7:43152228-43605600:+ chr7:43580762:+ chr7:45632245,chr7:45632245 chr7:43533605,chr7:43533602 NA NA chr7:45671844,chr7:45671844 chr7:43573204,chr7:43573201 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Adenylate_and_Guanylate_cyclase_catalytic_domain(2%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(100%)|HECT-domain_(ubiquitin-transferase)(87%) AC_N(100%),Guanylate_cyc(0%)|HECT(39%) 2 8 9 274 70 ENST00000297323.12 ENST00000395891.7 downstream upstream duplicates(9),multimappers(1) CCTGCAGGCCCGGAGCTGCATTGAGGACCGACTGAGGCTGGAGGATGAGAACGAGAAGCAG___GAGCGGCTCCTCATGAGCCTCCTGCCCCGGAACGTTGCCATGGAGATGAAGGAGGACTTCCTGAAGCCCCCTGAGAGGATTTTCCACAAGATTTACATCCAGAGGCACGACAATGTGAG|GTTCAGGTTTAGCGGTCGCATCCTGGGTCTGGCTCTGATCCATCAGTACCTTCTTGACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAGACT___GCCCTGTGATTTGAGTGACCTGGAATATTTGGATGAGGAATTCCACCAGAGTTTGCAGTGGATGAAGGACAACAACATCACAGACATCTTAGAC...AAGGGAGTTGAAGTCTGGAGGAGCCAACACACAGGTGACGGAGAAAAACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTGGAGCGCGGCGTGGTACAGCAGACCGAG LQARSCIEDRLRLEDENEKQERLLMSLLPRNVAMEMKEDFLKPPERIFHKIYIQRHDNVr|FRFSGRILGLALIHQYLLDAFFTRPFYKALLRLPCDLSDLEYLDEEFHQSLQWMKDNNITDIL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 908 ADCY1::HECW1 ENSG00000164742.16::ENSG00000002746.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 92 TRUE 152 TRUE 66 ADCY1 ENSG00000164742.16 protein_coding + + chr7:45574140-45723116:+ chr7:45622743:+ chr7:45613739-45762715:+ chr7:45662342:+ HECW1 ENSG00000002746.15 protein_coding + + chr7:43112629-43566001:+ chr7:43541163:+ chr7:43152228-43605600:+ chr7:43580762:+ chr7:45632245,chr7:45632245 chr7:43533605,chr7:43533602 NA NA chr7:45671844,chr7:45671844 chr7:43573204,chr7:43573201 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Adenylate_and_Guanylate_cyclase_catalytic_domain(12%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(100%)|HECT-domain_(ubiquitin-transferase)(87%) AC_N(100%),Guanylate_cyc(23%)|HECT(39%) 0 1 13 206 70 ENST00000297323.12 ENST00000395891.7 downstream upstream duplicates(8),low_entropy(1),multimappers(1) CTGAAGCCCCCTGAGAGGATTTTCCACAAGATTTACATCCAGAGGCACGACAATGTGAG___CATCCTGTTTGCTGACATCGTGGGTTTCACGGGCTTGGCATCCCAGTGCACAGCCCAGGAGCTGGTGAAACTCCTCAATGAGCTCTTCGGCAAGTTCGATGAATTAGCCACG|GTTCAGGTTTAGCGGTCGCATCCTGGGTCTGGCTCTGATCCATCAGTACCTTCTTGACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAGACT___GCCCTGTGATTTGAGTGACCTGGAATATTTGGATGAGGAATTCCACCAGAGTTTGCAGTGGATGAAGGACAACAACATCACAG LKPPERIFHKIYIQRHDNVSILFADIVGFTGLASQCTAQELVKLLNELFGKFDELAT|vqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 909 CDC6::ENSG00000279668 ENSG00000094804.12::ENSG00000279668.4 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40291668:+ chr17:38444131-38460909:+ chr17:38447920:+ ENSG00000279668 ENSG00000279668.4 lncRNA - - chr17:33827699-34079100:- chr17:33828481:- chr17:32154718-32406119:- chr17:32155500:- chr17:40292671,chr17:40292672 chr17:33831931,chr17:33831930 NA NA chr17:38448923,chr17:38448924 chr17:32158950,chr17:32158949 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none AAA_domain(22%)| AAA(2%),AAA_16(5%),AAA_22(3%)| 2 8 8 430 163 ENST00000209728.9 ENST00000659958.1 downstream downstream duplicates(14),mismatches(1) TCGGCTGCCTGCCAGGGAAAGGGAGATGGATGTCATCAGGAATTTCTTGAGGGAACACATCTGTGGGAAAAAAGCTGGAAGCCTTTACCTTTCTGGTGCTCCTGGAACTGGAAAAACTGCCTGCTTAAGCCGGATTCTGCAAGACCTCAAG|GTCATACAAGTTACTGATGAGGTGACAAGATGGAAGATCACTTCTCACAAAGATGATACCTTCTCACAAGGACTAAAAGGTTTCCAGATAGATTTGAGCTCTTTCCATATgGTGCACCAATGATaTCACATGGCCCT RLPAREREMDVIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLK|viqvtdevtrwkitshkddtfsqglkgfqidlssfhmvhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 910 RCHY1::AIM2 ENSG00000163743.14::ENSG00000163568.16 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RCHY1 ENSG00000163743.14 protein_coding - - chr4:75479033-75514764:- chr4:75508820:- chr4:76404243-76439974:- chr4:76434030:- AIM2 ENSG00000163568.16 protein_coding - + chr1:159061599-159187843:- chr1:159124698:+ chr1:159031389-159157633:- chr1:159094488:+ chr4:75505804,chr4:75505805,chr4:75505806 chr1:159119179,chr1:159119179,chr1:159119177 NA NA chr4:76431014,chr4:76431015,chr4:76431016 chr1:159088969,chr1:159088969,chr1:159088967 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none CHY_zinc_finger(100%)| zf-CHY(100%)| 5 6 5 227 24 ENST00000324439.10 unknown upstream upstream duplicates(4),mismatches(1) TCAAGAGCGAGGTCAGCGGGGCTGCGAGCACTATGACAGAGGATGTCTCCTAAAG___GCACCTTGCTGTGACAAGCTTTATACTTGCCGCTTGTGTCATGATA...CAACTAGATCGCTTTAAAGTGAAGGAAGTGCAGTGCATAAACTGTGAAAAAATTCAACAT___GCCCAACAGACTTGTGAAGAATGTAGCACATTGTTTGGAGAATATTATTGCGATATATGCCATTTGTTTGACAAAGATAAGAAGCAGTATCACTGTGAAAACTGTGGAATTTGTAG|AGAACAACCCCTCAGATCACAGCCTTGACCTTCCCAGTGTTTCAGAGGTCCATTGAAGAACCACCAGCGCACCTCTCTCCCCAGCcCAGTAGAGCAGGAGGAAAACAG___CTTCTCAAAAGCCTTCTGAACACATTCATGTGATGAGAGCTATTTCCTGTCTGAGAATGGAAGTCAGGGAAGGACGAAGGAAAATGCAAGACTAAACTGCCACTGGCCTGGGAGTCTCCACCCATTTCCTGCACTGTGG...AATATCTCTTCCTCCAGTTTGCAAAGTCTCTGGTATTATCAGTTATGAAAATGTAATCTAAAATTGATAGAATAGGCCGGGCACGGTGGTTCACGCCTGT QLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICr|eqplrsqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 918 CCNJL::MIR3142HG ENSG00000135083.17::ENSG00000253522.6 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCNJL ENSG00000135083.17 protein_coding - - chr5:160249083-160345396:- chr5:160312364:- chr5:159676090-159772403:- chr5:159739371:- MIR3142HG ENSG00000253522.6 lncRNA + - chr5:160438594-160487426:+ chr5:160443428:- chr5:159865601-159914433:+ chr5:159870435:- chr5:160312185,chr5:160312188 chr5:160484564,chr5:160484564 NA NA chr5:159739192,chr5:159739195 chr5:159911571,chr5:159911571 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 3 9 1 46 23 ENST00000257536.13 unknown upstream downstream duplicates(7),mismatches(2) CGGGCTGCGGAGGCGGCCGTCGGGAGTGCGGAGCGCCTCGGACGAGGGTCCAACCGCCGGCAGGCACCAGAGGGCACGGCTGGCTCGGCACTGGGAGGGGCCCGGCGCTCGCAGCCCCCCACGCCCAGAGAGGATGC|GAGGTGTCCTTTGAGCCATGGGAGGAAGCCTTTCCAAAGACCACCTGATCCCATCTCCTGGACTGAGGGAATGAAGTGTCATAATGCAGAGAGAAAGAAGTGAAGAAGGAGCACAGAGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 921 IGF1R::ENSG00000259199 ENSG00000140443.15::ENSG00000259199.2 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ ENSG00000259199 ENSG00000259199.2 lncRNA - + chr15:98038571-98293199:- chr15:98150634:+ chr15:98581800-98836428:- chr15:98693863:+ chr15:98888925,chr15:98888925 chr15:98117395,chr15:98117392 NA NA chr15:99432154,chr15:99432154 chr15:98660624,chr15:98660621 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)| C_tripleX(0%),Furin-like(0%),Recep_L_domain(1%)| 4 1 7 124 12 ENST00000650285.1 unknown downstream upstream duplicates(4) GACCTCTTCCCCAACCTCACGGTCATCCGCGGCTGGAAACTCTTCTACAACTACGCCCTGGTCATCTTCGAGATGACCAATCTCAAGGATATTGGGCTTTACAACCTGAGGAACATTACTCGGGGGGCCATCAGGATTGAGAAAAATGCTGACCTCTGTTACCTCTCCACTGTGGACTGGTCCCTGATCCTGGATGCGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|AAGTATTCCAGCTAATAAAGGAAGAGAAATAACAGGATGAAAACTTCAGCATTTCATCACCCTGAAGCAATTAAGGATGAAAACAATGATCAGCCATGAGGGTGGCTGACGTTACAGAAAGAGCCAGCCAGACCCAGGTGCTTCCTGAGAGAGACACCAACATTAACG___GTAATTATAATTGCCAGCTGGGTACTTCATG...___GCCCTCAAATGAT DLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|kvfqlikeek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 922 TMEM50A::RHD ENSG00000183726.11::ENSG00000187010.21 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 94 FALSE NA FALSE NA TMEM50A ENSG00000183726.11 protein_coding + + chr1:25338317-25362361:+ chr1:25356853:+ chr1:25664808-25688852:+ chr1:25683344:+ RHD ENSG00000187010.21 protein_coding + + chr1:25272393-25330445:+ chr1:25284573:+ chr1:25598884-25656936:+ chr1:25611064:+ chr1:25358993,chr1:25358994 chr1:25279014,chr1:25279012 NA NA chr1:25685484,chr1:25685485 chr1:25605505,chr1:25605503 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterised_protein_family_(UPF0220)(90%)|Ammonium_Transporter_Family(92%) UPF0220(80%)|Ammonium_transp(78%) 5 3 3 387 10 ENST00000374358.5 ENST00000622561.4 downstream upstream duplicates(5) GAGGCGGGCCGGCGCGGCGCGACACCGGGCTCCGGAACCACTGCACGACGGGGCTGGAC___TGACCTGAAAAAAA[a]TGTCTGGATTTCTAGAGGGCTTGAGAT...ATAGTTACAGTGAAGGTTGTCTGGGTCAAACAG___GTGCTCGCATTTGGCTTTTCGTTGGTTTCATGTTGGCCTTTGGATCTCTGATTGCATCTATGTGGATTCTTTTTGGAGGTTATGTTGCTAAAG___AAAAAGACATAGTATACCCTGGAATTGCTGTATTTTTCCAGAATGCCTTCATCTTTTTTGG|TTGGCCAAGATCTGACCGTGATGGCGGCCATTGGCTTGGGCTTCCTCACCTCGAGTTTCCGGAGACACAGCTGGAGCAGTGTGGCCTTCAACCTCTTCATGCTGGCGCTTGG SYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFFg|wprsdrdgghwlglphlefpetqleqcglqplhaga NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 928 MTMR3::HSCB ENSG00000100330.16::ENSG00000100209.11 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MTMR3 ENSG00000100330.16 protein_coding + + chr22:29883169-30030868:+ chr22:29979052:+ chr22:30279158-30426857:+ chr22:30375041:+ HSCB ENSG00000100209.11 protein_coding + + chr22:28742039-28757515:+ chr22:28751241:+ chr22:29138027-29153503:+ chr22:29147229:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |HSCB_C-terminal_oligomerisation_domain(54%) |HSCB_C(52%) 3 3 2 172 141 ENST00000323630.9 ENST00000216027.8 downstream upstream duplicates(1) GTGGTTGTGAGAAGGCGGCGGCGGCGGCGGAGTAGCAGCCGGACGAGACGTCCCAGCGGCTCAGGCGCTGCCCAGCGCCGGCCCTGGCAGGGgGCCTGGTG...CACACTAGGAGCGTTGAGCCCTGTGAGGATATCACACCTGACCCTGGAATGGCAGTTGTGTAAGG___ACTTCCTTGTGAAACCTCCTAGTAGAAAAAGTTCTT...CTTTCCCAGGAAGCAGCTGATCCGGGAGGATGAGAATCTTCAG___GTTCCTTTCCTTGAACTTCATGGAGAGAGCACAGAGTTTGTGGGCCGTGCCGAGGATGCCATCATTGCCCTTTCCAATTACAGACTTCACATCAAGTTCAAGGAGTCTCTTGTTAAT|CTAAACAGAAAGAATTTACTGACAATGTGAGCAGTGCTTTTGAACAAG___ATGACTTTGAAGAAGCCAAGGAAATTTTGACAAAGATGAGATACTTTTCAAATATAGAAGAAAAGATCAAGTTAAAGAAGATTCCCCTTTAATTGTGGATAGTTTAAAGTTTAAAAAATAAAGTTCTTGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATGACAAGGTCAGGAGTTCAAGACCAGCTTGGCCAACATAGTGAAACCCCGTCTCTGCTGAAAATACAAAAATTAGCCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 929 ESR1::SYNE1 ENSG00000091831.25::ENSG00000131018.25 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151880771:+ chr6:151977826-152450754:+ chr6:152201906:+ SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152218403:- chr6:152442822-152958936:- chr6:152539538:- chr6:151883261,chr6:151883262 chr6:152218886,chr6:152218886 NA NA chr6:152204396,chr6:152204397 chr6:152540021,chr6:152540021 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ligand-binding_domain_of_nuclear_hormone_receptor(0%),Oestrogen_receptor(99%),Zinc_finger__C4_type_(two_domains)(100%)|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(59%) Hormone_recep(24%),Oest_recep(28%),zf-C4(100%)|KASH(100%),Spectrin(80%) 0 2 4 0 42 ENST00000440973.5 ENST00000367255.10 downstream downstream duplicates(2) CTTCAGGCTACCATTATGGAGTCTGGTCCTGTGAGGGCTGCAAGGCCTTCTTCAAGAGAAGTATTCAAG___GACATAACGACTATATGTGTCCAGCCACCAACCAGTGCACCATTGATAAAAACAGGAGGAAGAGCTGCCAGGCCTGCCGGCTCCGTAAATGCTACGAAGTGGGAATGATGAAAGGTG|GCTGGAGTTCTTGATTATGAAACCTTTGCCAAGAGTTTAGAAGCTTTGGAGGCCTGGATAGTGGAAGCTGAAGAAATACTACAAGGGCAGGACCCTAGCCACTCATCTGACCTCTCCACAATCCAGGAAAGGATGGAAG...AAG___GGACAGATGTTAAAATTCAGCAGCATGGCTCCAGATTTAGACCGTCTAAATGAGCTTGGATATAGGTTACCCTTGAATGATAAGGAAATCAAAAGAAT...GCCATTGGTCTCTGATCTCCTCTCAGACTACAGAAAGATTCAG___CAAGTTGCAGTCATTTTTGCTACAACATCAGACTTTCTTGGAAAAATGTGAAACATGG SGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKG|gwss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 152265643 FALSE 152694354 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 930 SYNE1::ESR1 ENSG00000131018.25::ENSG00000091831.25 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152239533:- chr6:152442822-152958936:- chr6:152560668:- ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151807843:+ chr6:151977826-152450754:+ chr6:152128978:+ chr6:152238624,chr6:152238628 chr6:151796948,chr6:151796944 NA NA chr6:152559759,chr6:152559763 chr6:152118083,chr6:152118079 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(24%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Oestrogen-type_nuclear_receptor_final_C-terminal_(100%),Oestrogen_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%) CH(100%),Spectrin(11%)|ESR1_C(100%),Hormone_recep(100%),KASH(100%),Oest_recep(100%),zf-C4(100%) 2 0 2 35 8 ENST00000367255.10 ENST00000440973.5 upstream upstream duplicates(2),mismatches(1) TGGCTCCCGGAGGAGTGGTCTGAATCAGAACCTTACACTCAAGAGTCAGTATGAGAGGGCCCTACAAGATCTGGCTGACCTGCTAGAAACTGGTCAGGAGA...CTGGAATCTCATATGATCTTGACTGAAACACTCTTCAGAAAGATAATCAGCTTTGCAGTCCAAAAGGAAACCCAGTTCCATACAGAGCTGATGGCTCAGG...AGCTGGAGTACATTCTAGAG|GTGGCCCGCCGGTTTCTGAGCCTTCTGCCCTGCGGGGACACGGTCTGCACCCTGCCCGCGGCCACGGACCATGACCATGACCCTCCACACCAAAGCATCTGGGATGGCCCTACTGCATCAGATCCAAGGGAACGAGCTGG LEYILE|varrflsllpcgdtvctlpaatdhdhdpphqsiwdgptasdprera NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 152565672|152565672|152570296 FALSE|FALSE|FALSE 152415520|152419867|152419867 FALSE|FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation 932 EIF2AK2::PRKD3 ENSG00000055332.19::ENSG00000115825.11 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIF2AK2 ENSG00000055332.19 protein_coding - - chr2:37099210-37157522:- chr2:37107258:- chr2:37326353-37384665:- chr2:37334401:- PRKD3 ENSG00000115825.11 protein_coding - - chr2:37250502-37324833:- chr2:37293271:- chr2:37477645-37551976:- chr2:37520414:- chr2:37100211,chr2:37100217 chr2:37295531,chr2:37295534 NA NA chr2:37327354,chr2:37327360 chr2:37522674,chr2:37522677 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site duplication high none Double-stranded_RNA_binding_motif(100%),Protein_kinase_domain(100%)|PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) PK_Tyr_Ser-Thr(100%),Pkinase(100%),dsrm(100%)|C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 3 104 271 ENST00000647926.1 ENST00000234179.8 upstream downstream duplicates(2),mismatches(1) GGATGGCATCATCTCAGATATATTTGATAAAAAAGAA___AAAACTCTTCTACAGAAATTACTCTCAAAGAAACCTGAGGATCGACCTAACACATCTGAAATACTAAGGACCTTGACTGTGTGGAAGAAAAGCCCAGAGAAAAATGAACGACACACATGTTAGAGCCCTTCTGAAAAA|TTTCCAGAGTGTGGATTCTTTGGCATGTATGACAAAATTCTTCTCTTTCGCCATGACATGAACTCAGAAAACATTTTGCAGCTGATTACCTCAGCAGATGAAATACATGAAGGAGACCTAGTGGAAGTGGTTCTTTCAG___CTTTAGCCACAGTAGAAGACTTCCAGATTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Interferon-induced Other PEK P19525 TRUE FALSE Serine/threonine-protein kinase D3 CAMK PKD O94806 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 933 SPEF2::ENSG00000248975 ENSG00000152582.14::ENSG00000248975.2 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPEF2 ENSG00000152582.14 protein_coding + + chr5:35617844-35814611:+ chr5:35641683:+ chr5:35617946-35814713:+ chr5:35641785:+ ENSG00000248975 ENSG00000248975.2 lncRNA - + chr14:29952397-30297043:- chr14:30033713:+ chr14:30421603-30766249:- chr14:30502919:+ chr5:35646652,chr5:35646652,chr5:35646652,chr5:35646652 chr14:30023095,chr14:30023067,chr14:30023056,chr14:30023041 NA NA chr5:35646754,chr5:35646754,chr5:35646754,chr5:35646754 chr14:30492301,chr14:30492273,chr14:30492262,chr14:30492247 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none CH-like_domain_in_sperm_protein(100%)| CH_2(100%)| 1 1 2 35 2 ENST00000356031.8 unknown downstream upstream none AATTTTTCTCGCTTGGAGCCAACACTTcACCTTCTGaGTGTGCAGTTTGATCAGAATGTGGCCCATGGCATCATCACAGAAAAGCCTGGGGTGGCAACAAAGCTGTTATATCAATTGTACATTGCTCTTCAGAAAAAGAAGAAAAGTGGACTGACTGGAGTGGAGATGCAAACCATGCAACGTCTGACAAATTTAAGACTTCAAAACATGAAAAGTGATACTTTTCAAGAG|AGGATACAGTGaAGGATTCAGAGGTCGTAGAAGATGGTGGAGTCTCTGGATGGAAGGAAGCTGGGTCTCTAAATCACAAGGTGGAAGACGACTCACCAAACACCTTATTGGACAATGACATGAATGAGAACTAAAAC...TGTAACTCACTAATAGTTGGGGTTGATTGTTATGATACCTAGTCTACCTAGGCCAATAGAGCCAATTCCTAATAATATCATCTCGGAAGGGTAGGATGAAG NFSRLEPTLhLLsVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKKKSGLTGVEMQTMQRLTNLRLQNMKSDTFQE|riq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 937 SPEF2::PRKD1 ENSG00000152582.14::ENSG00000184304.17 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPEF2 ENSG00000152582.14 protein_coding + + chr5:35617844-35814611:+ chr5:35641683:+ chr5:35617946-35814713:+ chr5:35641785:+ PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:30033713:+ chr14:30045685-30661104:- chr14:30502919:+ chr5:35646652,chr5:35646652,chr5:35646652,chr5:35646652 chr14:30023095,chr14:30023067,chr14:30023056,chr14:30023041 NA NA chr5:35646754,chr5:35646754,chr5:35646754,chr5:35646754 chr14:30492301,chr14:30492273,chr14:30492262,chr14:30492247 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none CH-like_domain_in_sperm_protein(100%)| CH_2(100%)| 1 1 2 35 2 ENST00000356031.8 unknown downstream upstream none AATTTTTCTCGCTTGGAGCCAACACTTcACCTTCTGaGTGTGCAGTTTGATCAGAATGTGGCCCATGGCATCATCACAGAAAAGCCTGGGGTGGCAACAAAGCTGTTATATCAATTGTACATTGCTCTTCAGAAAAAGAAGAAAAGTGGACTGACTGGAGTGGAGATGCAAACCATGCAACGTCTGACAAATTTAAGACTTCAAAACATGAAAAGTGATACTTTTCAAGAG|AGGATACAGTGaAGGATTCAGAGGTCGTAGAAGATGGTGGAGTCTCTGGATGGAAGGAAGCTGGGTCTCTAAATCACAAGGTGGAAGACGACTCACCAAACACCTTATTGGACAATGACATGAATGAGAACTAAAAC...TGTAACTCACTAATAGTTGGGGTTGATTGTTATGATACCTAGTCTACCTAGGCCAATAGAGCCAATTCCTAATAATATCATCTCGGAAGGGTAGGATGAAG NFSRLEPTLhLLsVQFDQNVAHGIITEKPGVATKLLYQLYIALQKKKKSGLTGVEMQTMQRLTNLRLQNMKSDTFQE|riq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 938 ANKRD17-DT::RYR2 ENSG00000250220.1::ENSG00000198626.18 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 157 TRUE 67 ANKRD17-DT ENSG00000250220.1 lncRNA + + chr4:73259209-73317953:+ chr4:73259408:+ chr4:74124926-74183670:+ chr4:74125125:+ RYR2 ENSG00000198626.18 protein_coding + + chr1:237042184-237833988:+ chr1:237705213:+ chr1:237205484-237997288:+ chr1:237868513:+ chr4:73298103,chr4:73298088,chr4:73298097 chr1:237702358,chr1:237702348,chr1:237702348 NA NA chr4:74163820,chr4:74163805,chr4:74163814 chr1:237865658,chr1:237865648,chr1:237865648 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Ion_transport_protein(100%),RyR_and_IP3R_Homology_associated(100%),Ryanodine_Receptor_TM_4-6(100%) |Ion_trans(100%),RIH_assoc(100%),RR_TM4-6(100%) 1 1 2 42 13 ENST00000502790.1 ENST00000366574.7 downstream upstream duplicates(1) GGCCGAAAGGCGAAAGTGAGATTTCAAGGGCCGGGTCTGGGGCCCCGCGGGCGCGCAGTGCTGCGGCGTGTGGGGAGTACGGGGAGGCTGGAGAGGAGCCGGCCCCGGGCAGTGTGAGGTGCGGAAGCGCGGTCCAGACAgTTTGCTGgCGGGAGGCCGGTCCGCCAGATCCGGGAGGTGGGGCCTCGTTCTGGACTGCT|GCAACGTTCTGCATTAGGAGAATGTCTAGCTGCCTTTGCTGGTGCTTTTCCTGTAGCATTTTTGGAAACTCA...ACCAAGTCTTCACGAGAAAGAGCAG___CTCTCAGTTTGCCAACTAATGTGGAAGATGTTTGTCCAAACATACCGTCTTTGGAGAAACTCATGGAAGAAATCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 939 ANKRD17-DT::RYR2 ENSG00000250220.1::ENSG00000198626.18 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 157 TRUE 67 ANKRD17-DT ENSG00000250220.1 lncRNA + + chr4:73259209-73317953:+ chr4:73269953:+ chr4:74124926-74183670:+ chr4:74135670:+ RYR2 ENSG00000198626.18 protein_coding + + chr1:237042184-237833988:+ chr1:237705213:+ chr1:237205484-237997288:+ chr1:237868513:+ chr4:73298103,chr4:73298088,chr4:73298097 chr1:237702358,chr1:237702348,chr1:237702348 NA NA chr4:74163820,chr4:74163805,chr4:74163814 chr1:237865658,chr1:237865648,chr1:237865648 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Ion_transport_protein(100%),RyR_and_IP3R_Homology_associated(100%),Ryanodine_Receptor_TM_4-6(100%) |Ion_trans(100%),RIH_assoc(100%),RR_TM4-6(100%) 0 1 2 5 13 ENST00000502790.1 ENST00000366574.7 downstream upstream none TTTTCTTGCATGACTTCACTGGCTAGAACCACTACTACAATGCTGATTAGAAGTG|GCAACGTTCTGCATTAGGAGAATGTCTAGCTGCCTTTGCTGGTGCTTTTCCTGTAGCATTTTTGGAAACT...CCAAGTCTTCACGAGAAAGAGCAG___CTCTCAGTTTGCCAACTAATGTGGAAGATGTTTGTCCAAACATACCGTCTTTGGAGAAACTCATGGAAGAAATCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 940 SERINC5::CMYA5 ENSG00000164300.17::ENSG00000164309.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SERINC5 ENSG00000164300.17 protein_coding - - chr5:80111651-80256048:- chr5:80202886:- chr5:79407474-79551867:- chr5:79498705:- CMYA5 ENSG00000164309.15 protein_coding + + chr5:79689836-79800240:+ chr5:79799370:+ chr5:78985659-79096063:+ chr5:79095193:+ chr5:80190016,chr5:80190020 chr5:79793649,chr5:79793645 NA NA chr5:79485838,chr5:79485842 chr5:79089472,chr5:79089468 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Serine_incorporator_(Serinc)(12%)| Serinc(0%)| 1 2 0 68 10 ENST00000509193.5 ENST00000446378.3 upstream upstream none ACGCCCTCTACTTCATTCTGGTCGTCGTCCTCTGCTGCATCATGATGTCAACAACCGTGGCTCACAAGATGAAAGAGCAC|ATACACATTTTTCTACAGTGGTATTGTGAGTGATGTTCATGTGACTGAGCGTCCAGCCAGAGTGGGCATCCTGCTGGACTACAACAACCAGAGACTTATCTTCATCAACGCAGAG ALYFILVVVLCCIMMSTTVAHKMKEH|ihiflqwyce* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 941 IGF1R::ENSG00000259320 ENSG00000140443.15::ENSG00000259320.2 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ ENSG00000259320 ENSG00000259320.2 lncRNA - + chr15:98111729-98131707:- chr15:98122441:+ chr15:98654958-98674936:- chr15:98665670:+ chr15:98888925,chr15:98888925 chr15:98117395,chr15:98117392 NA NA chr15:99432154,chr15:99432154 chr15:98660624,chr15:98660621 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)| C_tripleX(0%),Furin-like(0%),Recep_L_domain(1%)| 0 1 2 124 8 ENST00000650285.1 unknown downstream upstream none GTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|GTTTCACTTTTCTAATCTGTTAACAAAGATGTTCAAGCCTACCATTCAAATTTGTTGTGAAGATTAAAGGAAACACTGTCTTCTTAGTTTGGGTCCTACTTTAGCAGATCATGAGACAAAaATTCACATGCAAGTAGTTTATTTGGACATAAATTTGTATTTGCT...AGGACACCtGTTCTATTGGATTAGAATTCATGACCTCATTTTAATTTAATTACCTCTGCAAAGATGATATCTCCAAACACAGTCACATATGGGGGTACTAG GDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|sftflic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 954 ENSG00000284428::ZNF91 ENSG00000284428.1::ENSG00000167232.14 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 159 FALSE NA ENSG00000284428 ENSG00000284428.1 lncRNA - - chr19:23259906-23274251:- chr19:23272619:- chr19:23442708-23457053:- chr19:23455421:- ZNF91 ENSG00000167232.14 protein_coding - - chr19:23304991-23395471:- chr19:23309097:- chr19:23487793-23578273:- chr19:23491899:- chr19:23263011,chr19:23263015 chr19:23359142,chr19:23359143 NA NA chr19:23445813,chr19:23445817 chr19:23541944,chr19:23541945 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 2 12 4 ENST00000639997.1 ENST00000596528.1 upstream downstream duplicates(1) CAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG___TTTCACTCTCGTTGCCCAGGCTG...ACTACAACCTCCACCTCCCAGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAA|GGCCCAGACAGAAGAGAAGAGTCACATCATCTAGATGATGAATGAAAAGATATGTCATTATTCTCCTTTGGGCAGTGCTTCTGCAGAAAAGTTGCACCTTCTAGGTGTTGG...AGGCCCAGCAATACATCTCAAGCACTTCTTGGGCAAAGCCCAAGCAGTAAAAAAGAGTCACATTACCTAGGTTCTGGGTATAGCAATATGTCACAAATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 993 EHBP1::SLC44A5 ENSG00000115504.15::ENSG00000137968.17 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EHBP1 ENSG00000115504.15 protein_coding + + chr2:62673851-63046487:+ chr2:62831158:+ chr2:62900986-63273622:+ chr2:63058293:+ SLC44A5 ENSG00000137968.17 protein_coding - - chr1:75202129-75611114:- chr1:75203833:- chr1:75667814-76076799:- chr1:75669518:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(100%)|Plasma-membrane_choline_transporter(1%) NT-C2(100%)|Choline_transpo(0%) 1 0 0 335 172 ENST00000405015.7 ENST00000370859.8 downstream downstream none AAAGCTCTTGCTACTAGCAGCATCAATATGAAACAGTATGCAAGCCCTATGCCAACTCAGACTGATGTCAAGTTAAAATTCAAGCCATTATCTAAAAAAGT...ATAATGAAGATGATGATGAGAACAGAGTGAACCAAGAAGAAAAGGCAGCTAAAATTACAG|TGGAAGATTTAGAAAGAAATGATGGTTCTACTGCAAGACC NEDDDENRVNQEEKAAKIT|vEDLERNDGSTAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 994 RAI1::ERI3 ENSG00000108557.20::ENSG00000117419.16 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 97 TRUE 161 TRUE 68 RAI1 ENSG00000108557.20 protein_coding + + chr17:17681458-17811453:+ chr17:17681793:+ chr17:17584772-17714767:+ chr17:17585107:+ ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44308401:- chr1:44686742-44820932:- chr1:44774073:- chr17:17721613,chr17:17721614 chr1:44312841,chr1:44312840 NA NA chr17:17624927,chr17:17624928 chr1:44778513,chr1:44778512 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Exonuclease(61%) |RNase_T(65%) 0 21 1 52 535 ENST00000353383.6 ENST00000372257.7 downstream downstream duplicates(17) ACCCCCATGGCCACCCAGGCCTCCGGGCCGCGAAGTCGCAGCGCCAGACCCAAGGCCCCCGAGTGAGCGCGGGCGCCGAG|AGGGTCGATGAATGGATGGCGAAGGAAGGCCTCTTAGATCCAAACGTCAAGTCAATTTTTGTCACCTGTGGAGACTGGGACTTAAAAGTCAT___GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG___GCTTACAGCTTCGCCATGGGCTGCTGGCCCAAGAATGGACTTCTAGACATGAACAAGGGCCTCAGCCTGCAACACATAGGCCGGCCCCACAGCGGCATTG___ACGACTGCAAGAACATTGCCAACATCATGAAGACACTCGCCTATCGAGGCTTCATCTTCAAGCAGACATCGAAGCCGTTCTGATTGGCCGAGGACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 995 RAI1::ERI3 ENSG00000108557.20::ENSG00000117419.16 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 161 TRUE 68 RAI1 ENSG00000108557.20 protein_coding + + chr17:17681458-17811453:+ chr17:17681793:+ chr17:17584772-17714767:+ chr17:17585107:+ ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44284907:- chr1:44686742-44820932:- chr1:44750579:- chr17:17721613,chr17:17721614 chr1:44312841,chr1:44312840 NA NA chr17:17624927,chr17:17624928 chr1:44778513,chr1:44778512 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Exonuclease(46%) |RNase_T(47%) 2 2 0 52 627 ENST00000353383.6 ENST00000372257.7 downstream downstream none CGGGCCGCCGCGCCCCGACCCCCATGGCCACCCAGGCCTCCGGGCCGCGAAGTCGCAGCGCCAGACCCAAGGCCCCCGAGTGAGCGCGGGCGCCGAG|GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG___ACGACTGCAAGAACATTGCCAACATCATGAAGACACTCGCCTATCGAGGCTTCATCTTCAAGCAGACATCGAAGCCGTTCTGATTGGCCGAGGACAGGATGGGGCAGGACAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 996 RAI1::ERI3 ENSG00000108557.20::ENSG00000117419.16 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 161 TRUE 68 RAI1 ENSG00000108557.20 protein_coding + + chr17:17681458-17811453:+ chr17:17683703:+ chr17:17584772-17714767:+ chr17:17587017:+ ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44308401:- chr1:44686742-44820932:- chr1:44774073:- chr17:17721613,chr17:17721614 chr1:44312841,chr1:44312840 NA NA chr17:17624927,chr17:17624928 chr1:44778513,chr1:44778512 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Exonuclease(61%) |RNase_T(65%) 1 0 2 9 535 ENST00000489697.1 ENST00000372257.7 downstream downstream duplicates(1),mismatches(1) CCCCGAGTGAGCGCGGGCGCCGAG___GCAAGCCGGTATATTCGGGGCCCAGGAGCAAGGAAAAGTGGCCTTTTGCGTGACACAGAAGTGGACACATCATTCTGATCTCAGGGCAGGCTCAGCCCCATAACTCTGGCAAAAGCTCTCACAAGCAAAAGCCTTGGAGAGGAGGAGAATGTATCAAG|AGGGTCGATGAATGGATGGCGAAGGAAGGCCTCTTAGATCCAAACGTCAAGTCAATTTTTGTCACCTGTGGAGACTGGGACTTAAAAGTCAT___GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG___GCTTACAGCTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 997 SMC1A::PMP22 ENSG00000072501.19::ENSG00000109099.16 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMC1A ENSG00000072501.19 protein_coding - - chrX:53374149-53422728:- chrX:53394778:- chrX:53401070-53449677:- chrX:53421698:- PMP22 ENSG00000109099.16 protein_coding - + chr17:15229773-15272292:- chr17:15256797:+ chr17:15133090-15175609:- chr17:15160114:+ chrX:53383597,chrX:53383603 chr17:15251799,chr17:15251793 NA NA chrX:53410518,chrX:53410524 chr17:15155116,chr17:15155110 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RecF/RecN/SMC_N_terminal_domain(83%),SMC_proteins_Flexible_Hinge_Domain(100%)| AAA_15(100%),AAA_21(100%),AAA_23(100%),AAA_29(100%),SMC_N(65%),SMC_hinge(100%)| 4 4 4 274 15 ENST00000375340.10 unknown upstream upstream duplicates(3) GGAAATGACCCATTTACAGAAGGAGGTGACAGCCATTGAGACCAAGCTTGAACAGAAGCGCAGTGACCGTCACAACTTGCTACAGGCCTGTAAGATGCAGGACATTAAGTTGCCACTGTCAAAAGGCACCATGGATGATATTAGTCAGGAAGAG___GGTAGCTCCCAGGGGGAGGACTCAGTGAGTGGTTCACAGAGAATTTCCAGTATCTATGCACGAGAGGCCCTCATTGAGATTGACTACGGTGATCTGTGTGAGGATCTGAAG|CTTATTGTCTGCAGCCACAATTGTTAAACTCAATCAAAGAGGCCCTGGAGGATTCGCCACTTAAGGCTGAAGTCGTAGCAAGTGCTGCCACGTTGGGGAAGATAGCGGCAGAGATAACCACTACTGGGGAAGTGTAAATGGAAATTTCAAATTTAGATTAAGCCTGAGTGGCGTGAAAACAAACCCAGCATGTTCAGGTGCAGTGTCCAGATGTTTTCAAAATGCCCTGATTGTGAGAGCTG EMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLSKGTMDDISQEEGSSQGEDSVSGSQRISSIYAREALIEIDYGDLCEDLK|livcshnc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6857 chrX:53405673-53405765:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE structural maintenance of chromosomes 1A 2 AML leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 998 YTHDF3::CECR2 ENSG00000185728.17::ENSG00000099954.19 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63187745:+ chr8:64081112-64125344:+ chr8:64100303:+ CECR2 ENSG00000099954.19 protein_coding + - chr22:17359949-17558151:+ chr22:17430805:- chr22:17840839-18037852:+ chr22:17909850:- chr8:63189452,chr8:63189453 chr22:17434500,chr22:17434500 NA NA chr8:64102010,chr8:64102011 chr22:17913545,chr22:17913545 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none YT521-B-like_domain(100%)| YTH(100%)| 3 3 6 568 11 ENST00000617200.1 unknown downstream downstream duplicates(19) CTGAAATGAAGTCTGTTGTGGACTATAATGCGTATGCTGGTGTCTGGTCTCAGGATAAGTGGAAGGGCAAATTTGAAGTTAAATGGATCTTTGTCAAAGATGTTCCCAATAACCAATTACGGCATATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGAGGTACCCCTAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGAGGAAGCCATGCGTAGG|GGTCATTTGAGAGCCAAGGAGTGAGCTGTTTTTAAAACCACCAAGAGACACTGCAGCCATGACCCAAAGGGATGATGCAACCTTGTTCTTTTCCCCAGTGAGTGTTTTCAAAGAAGCCTTGGCTGGATGCTGAGAAACAACTCCAGCTGTACAGAGTACAAGTCAGGCTTAGGATGAACCCTTCTTTCCTCAGCACTACAATCTGACAGGGCAGTCTAACCCAGAGAGAAAGCTGGCAGAAGGAGAAGGAAAATCAATCACATCCTGAGAGGCAGGAG EMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRR|ghlrake* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 999 AFAP1::ABLIM2 ENSG00000196526.11::ENSG00000163995.22 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 98 FALSE NA FALSE NA AFAP1 ENSG00000196526.11 protein_coding - - chr4:7758714-7939926:- chr4:7939656:- chr4:7760441-7941653:- chr4:7941383:- ABLIM2 ENSG00000163995.22 protein_coding - - chr4:7965310-8158832:- chr4:7967103:- chr4:7967037-8160559:- chr4:7968830:- chr4:7932016,chr4:7932022 chr4:7977664,chr4:7977667 NA NA chr4:7933743,chr4:7933749 chr4:7979391,chr4:7979394 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Putative_adherens-junction_anchoring_region_of_AbLIM(0%),Villin_headpiece_domain(100%) |VHP(100%) 3 2 7 301 23 ENST00000358461.6 ENST00000361737.9 upstream downstream duplicates(7),mismatches(3) CCGGCTGCAGCTCCGCGAGCCGAGCCGGATCTCGAGCGGGGTACACGGGCTGAGGCGGCGGCGGCGGCCCCGCCCCGGGGCTCCATTGTTAAGGCGGCTGCGGCTCTGTCGGCTGTTCAGCTGCGCTCCAGTCGGCCCAGGCGCCGCGGCGAGGAGCGAGCGCTGCGAGGTGGCGGCCTGAG|AGACACTTGTCGCCCGAGGAGTTCCAGGAAGTGTTTGGGATGAGCATCGAGGAGTTTGACCGCCTGGCCCTCTGGAAGAGGAATGACCTTAAGAAGAAAGCCCTTTTGTTCTGACGGCTGCCAGCCTGCCCCACTGGTGTGTGCCGGGCGCCGAGGCCAGGGGCCCCTGGCGAGAACCGCACACACCCCTCCCACACACCTTGCTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Mesothelioma LUNG,BREAST,BREAST,MESOTHELIUM no_match 7941383|7941383|7941383,7776466,7857193,7840251 TRUE|TRUE|TRUE,FALSE,FALSE,FALSE 8010829|8009927|8009924,7994654,8099009,7986620 FALSE|FALSE|FALSE,FALSE,FALSE,FALSE YES,YES,YES,PARTIALLY 5UTR-CDS,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1002 CNTLN::ADAMTSL1 ENSG00000044459.15::ENSG00000178031.18 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 162 FALSE NA CNTLN ENSG00000044459.15 protein_coding + + chr9:17134982-17503923:+ chr9:17135425:+ chr9:17134980-17503921:+ chr9:17135423:+ ADAMTSL1 ENSG00000178031.18 protein_coding + + chr9:17906563-18910950:+ chr9:18892389:+ chr9:17906561-18910948:+ chr9:18892387:+ chr9:17142317,chr9:17142316 chr9:18891897,chr9:18891893 NA NA chr9:17142315,chr9:17142314 chr9:18891895,chr9:18891891 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |PLAC_(protease_and_lacunin)_domain(100%),Thrombospondin_type_1_domain(25%) |PLAC(100%),TSP1_ADAMTS(28%),TSP_1(0%) 1 2 0 91 130 ENST00000380647.8 ENST00000680146.1 downstream upstream duplicates(1) AAGGGTCAGGGGGCCGGCGAGGGCCTGGGGGGGCAGCTCCGGCTCATGCTCCCCTCCTCAGCGCGCCCATGGGGTCCAGACGGCTAGAGGGCATCTCGGT...CGATGGTGACCCGGACGCAGCTGCTGGAGGAAGAGCTGAGCAGCCTAAAGGAGGAGTTGGCCCTGTGTCAG|GTGGATGGTGACCTCCTGGTCTGCCTGTACCCGGAGCTGTGGGGGAGGTGTCCAGACCCGCAGGGTGACCTGTCAAAAGCTGAAAGCC...TGTGGACACCCAGGCCTGTAACCAGCAGCTGTGTGTGGAGTGGGCCTTCTCCAGCTGGGGCCAGGTGAGGAGCCAGAGAGGTTGTTATTTGAAAGCTAAAT MVTRTQLLEEELSSLKEELALCQ|vdgdllvclypelwgrcpdpqgdlskaes NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1005 ZNF772::ZIM2 ENSG00000197128.13::ENSG00000269699.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 163 TRUE 69 ZNF772 ENSG00000197128.13 protein_coding - - chr19:57466663-57477570:- chr19:57476634:- chr19:57978031-57988938:- chr19:57988002:- ZIM2 ENSG00000269699.7 protein_coding - - chr19:56774547-56840731:- chr19:56789951:- chr19:57285915-57352099:- chr19:57301319:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(36%),zf-C2H2_4(100%),zf-C2H2_6(61%),zf-C2HC_2(58%),zf-met(100%) 0 3 1 39 9 ENST00000600175.5 ENST00000593711.6 upstream downstream duplicates(1) GCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG|GTTTCCTTGCTCAGGACTCTGTCCCTGCAGAAAAGAGGAACACAGAGATGTTAGACAATCTGCCATCTGCTGGGTCCCAG___TTCCCGGACTTCAAACACTTAGGAACATTTCTGGTGTTTGAGGAGTTGGTGACCTTCGAGGATGTGCTTGTGGACTTCAGCCCAG PMGPAQVPMNSEVIVDPIQ|vsllrtlslqkrgtqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1006 ZNF772::ZIM2 ENSG00000197128.13::ENSG00000269699.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 163 TRUE 69 ZNF772 ENSG00000197128.13 protein_coding - - chr19:57466663-57477570:- chr19:57477277:- chr19:57978031-57988938:- chr19:57988645:- ZIM2 ENSG00000269699.7 protein_coding - - chr19:56774547-56840731:- chr19:56789951:- chr19:57285915-57352099:- chr19:57301319:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(36%),zf-C2H2_4(100%),zf-C2H2_6(61%),zf-C2HC_2(58%),zf-met(100%) 0 1 1 53 9 ENST00000600175.5 ENST00000693159.1 upstream downstream duplicates(1) GTTTGCTTTTCCATTAATCCACTGGTTTAGTTTCCAGAACGCAATGTCAGACCTGAGGTGACAGAAAAGGGAAAACGTGAGAGAGTGTCTTCTTCCCTGAA...GCTGAGCCGATGGGCCCGGCACAG|GTTTCCTTGCTCAGGACTCTGTCCCTGCAGAAAAGAGGAACACAGAGATGTTAGACAATCTGCCATCTGCTGGGTCCCAG___GTGGGACCtTGAGGCTTAACCTACCCAAACTCACAAAGAACCAGA...CACTTAGGAACATTTCTGGTGTTTGAGGAGTTGGTGACCTTCGAGGATGTGCTTGTGGACTTCAGCCCAGAGGAACTTAGcTCCCTTAGTGCTGCTCAGAG AEPMGPAQ|vsllrtlslqkrgtqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1008 ZNF587B::ZNF627 ENSG00000269343.9::ENSG00000198551.10 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ZNF627 ENSG00000198551.10 protein_coding + - chr19:11559374-11619161:+ chr19:11609394:- chr19:11670189-11729976:+ chr19:11720209:- chr19:57824581,chr19:57824596 chr19:11616623,chr19:11616623 NA NA chr19:58335949,chr19:58335964 chr19:11727438,chr19:11727438 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 1 1 2 49 7 ENST00000594328.1 unknown downstream downstream duplicates(2) CGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTGCTCCCGGGCAGTGCTTTCCC...CGCCGAGGCGCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GTGTTCAATGGCAAATTCAAGCAAGCAAAATAAGAATCAGCTAACTTGAAGATAAAATTAACCACCTTGAAGAAAGAAAAAATAAATTTGAGAGAATGGGAACAATTGCTGGAGTTTGGTTGCACAACAAGGTGAGTATAGTTAACACTACTAAACTGTACACAAAAATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1009 ENSG00000268163::ZIM2 ENSG00000268163.1::ENSG00000269699.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 164 TRUE 70 ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57476634:- chr19:57949338-57988904:- chr19:57988002:- ZIM2 ENSG00000269699.7 protein_coding - - chr19:56774547-56840731:- chr19:56789951:- chr19:57285915-57352099:- chr19:57301319:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(36%),zf-C2H2_4(100%),zf-C2H2_6(61%),zf-C2HC_2(58%),zf-met(100%) 0 3 1 39 9 ENST00000596831.1 ENST00000593711.6 upstream downstream duplicates(1) GCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG|GTTTCCTTGCTCAGGACTCTGTCCCTGCAGAAAAGAGGAACACAGAGATGTTAGACAATCTGCCATCTGCTGGGTCCCAG___TTCCCGGACTTCAAACACTTAGGAACATTTCTGGTGTTTGAGGAGTTGGTGACCTTCGAGGATGTGCTTGTGGACTTCAGCCCAG PMGPAQVPMNSEVIVDPIQ|vsllrtlslqkrgtqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1010 ENSG00000268163::ZIM2 ENSG00000268163.1::ENSG00000269699.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 164 TRUE 70 ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57477277:- chr19:57949338-57988904:- chr19:57988645:- ZIM2 ENSG00000269699.7 protein_coding - - chr19:56774547-56840731:- chr19:56789951:- chr19:57285915-57352099:- chr19:57301319:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(36%),zf-C2H2_4(100%),zf-C2H2_6(61%),zf-C2HC_2(58%),zf-met(100%) 0 1 1 53 9 ENST00000596831.1 ENST00000693159.1 upstream downstream duplicates(1) GTTTGCTTTTCCATTAATCCACTGGTTTAGTTTCCAGAACGCAATGTCAGACCTGAGGTGACAGAAAAGGGAAAACGTGAGAGAGTGTCTTCTTCCCTGAA...GCTGAGCCGATGGGCCCGGCACAG|GTTTCCTTGCTCAGGACTCTGTCCCTGCAGAAAAGAGGAACACAGAGATGTTAGACAATCTGCCATCTGCTGGGTCCCAG___GTGGGACCtTGAGGCTTAACCTACCCAAACTCACAAAGAACCAGA...CACTTAGGAACATTTCTGGTGTTTGAGGAGTTGGTGACCTTCGAGGATGTGCTTGTGGACTTCAGCCCAGAGGAACTTAGcTCCCTTAGTGCTGCTCAGAG AEPMGPAQ|vsllrtlslqkrgtqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1011 ADAMTSL1::XKR4 ENSG00000178031.18::ENSG00000206579.10 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAMTSL1 ENSG00000178031.18 protein_coding + + chr9:17906563-18910950:+ chr9:18889748:+ chr9:17906561-18910948:+ chr9:18889746:+ XKR4 ENSG00000206579.10 protein_coding + - chr8:55102028-55542054:+ chr8:55408341:- chr8:56014588-56454613:+ chr8:56320901:- chr9:18890865,chr9:18890865,chr9:18890864 chr8:55411766,chr8:55411762,chr8:55411767 NA NA chr9:18890863,chr9:18890863,chr9:18890862 chr8:56324326,chr8:56324322,chr8:56324327 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Thrombospondin_type_1_domain(74%)| ADAM_CR_3(100%),ADAM_spacer1(100%),I-set(100%),Ig_2(100%),Ig_3(100%),TSP1_ADAMTS(71%),TSP_1(99%),ig(100%)| 2 0 2 119 4 ENST00000680146.1 unknown downstream downstream duplicates(2) GGGAATTCAGCTGCCTTGCTCAGAATGAGGCAGGGGTGCTCATGCAGAAGGCATCTTTAGTGATCCAAG___ATTACTGGTGGTCTGTGGACAGACTGGCAACCTGCTCAGCCTCCTGTGGTAACCGGGGGGTTCAGCAGCCCCGCTTGAGGTGCCTGCTGAACAGCACGGAGGTCAACCCTGCCCACTGCGCAGGGAAGGTTCGCCCTGCGGTGCAGCCCATCGCGTGCAACCGGAGAGACTGCCCTTCTCG|GTCTGCCACTTCCTAGCAGTGTAAATTTGGGCAAACTCTGGGCAACATTCCTATTGGAAGAAAAATCAGGATGATCATACCAACTTCCAAGGGTCGTTAGGAGGATTAATGAGATAAAAG EFSCLAQNEAGVLMQKASLVIQDYWWSVDRLATCSASCGNRGVQQPRLRCLLNSTEVNPAHCAGKVRPAVQPIACNRRDCPSr|sats* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3152 chr9:18573306-18573379:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1016 ENSG00000268750::ZNF627 ENSG00000268750.7::ENSG00000198551.10 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ZNF627 ENSG00000198551.10 protein_coding + - chr19:11559374-11619161:+ chr19:11609394:- chr19:11670189-11729976:+ chr19:11720209:- chr19:57824581,chr19:57824596 chr19:11616623,chr19:11616623 NA NA chr19:58335949,chr19:58335964 chr19:11727438,chr19:11727438 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 1 1 2 49 7 ENST00000596498.2 unknown downstream downstream duplicates(2) CGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTGCTCCCGGGCAGTGCTTTCCC...CGCCGAGGCGCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GTGTTCAATGGCAAATTCAAGCAAGCAAAATAAGAATCAGCTAACTTGAAGATAAAATTAACCACCTTGAAGAAAGAAAAAATAAATTTGAGAGAATGGGAACAATTGCTGGAGTTTGGTTGCACAACAAGGTGAGTATAGTTAACACTACTAAACTGTACACAAAAATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1020 PVT1::SNTB1 ENSG00000249859.14::ENSG00000172164.15 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120542000:- chr8:121547985-121825513:- chr8:121554240:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none |MTBP_C(100%) 1 1 1 286 34 ENST00000651587.1 ENST00000395601.7 downstream downstream mismatches(1) GCCGAGCACATGGGCCCGCGGGCCGGGCGGGgTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGGGTGCCTTTCCCAAGACCATCATACAGTCTCCTTATGAAAAGC...TCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGATT___CAACTGGACCTTCATTCCTGCCCCAAGCCAATTGTTTTCATCATTCATTCCTTCCTGTCAGCTAAGATTACAAGACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1024 ZNF772::ENSG00000286125 ENSG00000197128.13::ENSG00000286125.3 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF772 ENSG00000197128.13 protein_coding - - chr19:57466663-57477570:- chr19:57476634:- chr19:57978031-57988938:- chr19:57988002:- ENSG00000286125 ENSG00000286125.3 lncRNA + - chr19:56669941-56823395:+ chr19:56795837:- chr19:57181309-57334763:+ chr19:57307205:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 0 0 3 39 0 ENST00000600175.5 unknown upstream downstream duplicates(2),mismappers(1) AGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGAT[ggc]GGCGGCGGCTGAGCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAG...AGTAATTGTGGACCCTATACAG|GTGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGTAACCTCTGCCTCCCAGGTTCA...GCGCCCACCACCAACAGAAGGCGTTAGTTTTAAGAAGGAAGGTCACAGGAGCGCCCTCCTACGTCGCCGCCCTTCTCCTCGCCGTACCAACCCTATCCTCGTGTCTCACAGGGCACTTGGCCAGGAGCGGCTGTGGTTCCTCAGCCCGTCCACCGCAGAGCGCACGCGCAAGCCAGCC VIVDPIQ|vesrsvaqagvqwrdlgsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1025 ENSG00000268163::ENSG00000286125 ENSG00000268163.1::ENSG00000286125.3 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57476634:- chr19:57949338-57988904:- chr19:57988002:- ENSG00000286125 ENSG00000286125.3 lncRNA + - chr19:56669941-56823395:+ chr19:56795837:- chr19:57181309-57334763:+ chr19:57307205:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 0 0 3 39 0 ENST00000596831.1 unknown upstream downstream duplicates(2),mismappers(1) AGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGAT[ggc]GGCGGCGGCTGAGCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAG...AGTAATTGTGGACCCTATACAG|GTGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGTAACCTCTGCCTCCCAGGTTCA...GCGCCCACCACCAACAGAAGGCGTTAGTTTTAAGAAGGAAGGTCACAGGAGCGCCCTCCTACGTCGCCGCCCTTCTCCTCGCCGTACCAACCCTATCCTCGTGTCTCACAGGGCACTTGGCCAGGAGCGGCTGTGGTTCCTCAGCCCGTCCACCGCAGAGCGCACGCGCAAGCCAGCC VIVDPIQ|vesrsvaqagvqwrdlgsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1026 ENSG00000268163::ZIM2-AS1 ENSG00000268163.1::ENSG00000269793.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57476634:- chr19:57949338-57988904:- chr19:57988002:- ZIM2-AS1 ENSG00000269793.7 lncRNA + - chr19:56595313-56799602:+ chr19:56795837:- chr19:57106681-57310970:+ chr19:57307205:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 0 0 3 39 0 ENST00000596831.1 unknown upstream downstream duplicates(2),mismappers(1) AGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGAT[ggc]GGCGGCGGCTGAGCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAG...AGTAATTGTGGACCCTATACAG|GTGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGTAACCTCTGCCTCCCAGGTTCA...GCGCCCACCACCAACAGAAGGCGTTAGTTTTAAGAAGGAAGGTCACAGGAGCGCCCTCCTACGTCGCCGCCCTTCTCCTCGCCGTACCAACCCTATCCTCGTGTCTCACAGGGCACTTGGCCAGGAGCGGCTGTGGTTCCTCAGCCCGTCCACCGCAGAGCGCACGCGCAAGCCAGCC VIVDPIQ|vesrsvaqagvqwrdlgsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1027 ZNF772::ZIM2-AS1 ENSG00000197128.13::ENSG00000269793.7 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF772 ENSG00000197128.13 protein_coding - - chr19:57466663-57477570:- chr19:57476634:- chr19:57978031-57988938:- chr19:57988002:- ZIM2-AS1 ENSG00000269793.7 lncRNA + - chr19:56595313-56799602:+ chr19:56795837:- chr19:57106681-57310970:+ chr19:57307205:- chr19:57475905,chr19:57475909 chr19:56796472,chr19:56796473 NA NA chr19:57987273,chr19:57987277 chr19:57307840,chr19:57307841 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 0 0 3 39 0 ENST00000600175.5 unknown upstream downstream duplicates(2),mismappers(1) AGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGAT[ggc]GGCGGCGGCTGAGCCGATGGGCCCGGCACAG___GTTCCCATGAACTCAG...AGTAATTGTGGACCCTATACAG|GTGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGTAACCTCTGCCTCCCAGGTTCA...GCGCCCACCACCAACAGAAGGCGTTAGTTTTAAGAAGGAAGGTCACAGGAGCGCCCTCCTACGTCGCCGCCCTTCTCCTCGCCGTACCAACCCTATCCTCGTGTCTCACAGGGCACTTGGCCAGGAGCGGCTGTGGTTCCTCAGCCCGTCCACCGCAGAGCGCACGCGCAAGCCAGCC VIVDPIQ|vesrsvaqagvqwrdlgsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1031 MTM1::ENSG00000287912 ENSG00000171100.16::ENSG00000287912.2 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MTM1 ENSG00000171100.16 protein_coding + + chrX:150568417-150673143:+ chrX:150663542:+ chrX:149736867-149841616:+ chrX:149832015:+ ENSG00000287912 ENSG00000287912.2 lncRNA + + chr11:81175201-81449232:+ chr11:81227426:+ chr11:80886244-81160274:+ chr11:80938469:+ NA NA NA NA NA NA NA NA sense sense unknown CDS intron translocation low none GRAM_domain(100%),Myotubularin-like_phosphatase_domain(100%)| GRAM(100%),Myotub-related(75%)| 0 0 2 51 1 ENST00000685944.1 unknown downstream upstream none GAAAGGACTGTTTCTTTATGGTCACTGATAAACAGTAATAAAGAAAAATTCAAAAACCCCTTCTATACTAAAGAAATCAATCGAGTTTTATATCCAGTTGC...|...CGGAcTCTTGCcCTGTCTCCCAGGCTGGAtTGCAATGGCGTGATCTCGGCTCcCCGCAACCTCCGCCTGCCGGGTTCAAGCGATTCTCCTGACTCAGCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1034 PFKL::SLC37A1 ENSG00000141959.17::ENSG00000160190.14 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PFKL ENSG00000141959.17 protein_coding + + chr21:44300051-44327376:+ chr21:44306754:+ chr21:45719934-45747259:+ chr21:45726637:+ SLC37A1 ENSG00000160190.14 protein_coding + + chr21:42496008-42581440:+ chr21:42502296:+ chr21:43916118-44001550:+ chr21:43922406:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none Phosphofructokinase(6%)|Major_Facilitator_Superfamily(100%) PFK(27%)|MFS_1(100%) 0 1 0 646 1 ENST00000349048.9 ENST00000484887.1 downstream upstream none CGCATGGGCATTTATGTGGGTGCCAAAGTCTTCCTCATCTACGAG|CTTTATAGAATTGAGAGATTGCTGAGCCTAAATACATGTTGCTGCATTGCCTCCGAGAATGGCCGGACCTATCCCCACTCTCACCAAAACAGAGTGTGGGACTCACTGCTCCCTCGCCTACT___ATGTAACCTTCCTAGGGATGCT RMGIYVGAKVFLIYE|lyrierllslntccciasengrtyphshqnrvwdsllprllcnlprd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1038 CPS1::CASP10 ENSG00000021826.18::ENSG00000003400.16 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPS1 ENSG00000021826.18 protein_coding + + chr2:210477682-210679107:+ chr2:210616541:+ chr2:211342406-211543831:+ chr2:211481265:+ CASP10 ENSG00000003400.16 protein_coding + - chr2:201182872-201229428:+ chr2:201196665:- chr2:202047595-202094151:+ chr2:202061388:- chr2:210629621,chr2:210629622 chr2:201199963,chr2:201199962 NA NA chr2:211494345,chr2:211494346 chr2:202064686,chr2:202064685 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(50%),Carbamoyl-phosphate_synthase_small_chain__CPSase_domain(100%),Carbamoyl-phosphate_synthetase_large_chain__oligomerisation_domain(69%),Glutamine_amidotransferase_class-I(100%)| ATP-grasp(22%),CPSase_L_D2(35%),CPSase_L_D3(16%),CPSase_sm_chain(100%),Dala_Dala_lig_C(41%),GATase(100%)| 263 301 299 5552 3091 ENST00000430249.7 unknown downstream downstream duplicates(52),inconsistently_clipped(1),low_entropy(6),mismappers(39),mismatches(53),multimappers(1) AGTTTCCAGAAAGCTTTACGGATGTGCCACCCATCTATAGAAGGTTTCACTCCCCGTCTCCCAATGAACAAAGAATGGCCATCTAATTTAGATCTTAGAAAAGAGTTGTCTGAACCAAGCAGCACGCGTATCTATGCCATTGCCAAG___GCCATTGATGACAACATGTCCCTTGATGAGATTGAGAAGCTCACATACATTGACAAGTGGTTTTTGTATAAGATGCGTGATATTTTAAACATGGAAAAGACACTGAAAGGCCTCAACAG|TTGAAAACAAAAACAAAACATTTCCCAGACCAAGCTAACTTCATTGATGCTGACAGATGTTGGCAAAGAAATTACCCAAGTCTGCTGGAAGAACCACAAATCCCAGGGAAGACTGTCACATATCTCCCAAGGATCATGATCACATGGTGAGGAACAGACTGCAAATTCTCCCAACGTTTCCCCTTCCACCCATCCTTTCAGAGCTGAGCACCACAGAAACCAGAAACCCTTGCCCTCTGGGTTGGCCAGCTACATGCTTGGCAAACCTCTTG SFQKALRMCHPSIEGFTPRLPMNKEWPSNLDLRKELSEPSSTRIYAIAKAIDDNMSLDEIEKLTYIDKWFLYKMRDILNMEKTLKGLNs|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1049 CARS1::DCHS1 ENSG00000110619.18::ENSG00000166341.9 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 103 FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3038050:- chr11:3022152-3078843:- chr11:3059280:- DCHS1 ENSG00000166341.9 protein_coding - - chr11:6621330-6655809:- chr11:6634306:- chr11:6642561-6677040:- chr11:6655537:- chr11:3037313,chr11:3037317 chr11:6639127,chr11:6639128 NA NA chr11:3058543,chr11:3058547 chr11:6660358,chr11:6660359 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none tRNA_synthetases_class_I_(C)_catalytic_domain(34%)|Cadherin_domain(81%) tRNA-synt_1e(12%)|Cadherin(61%) 29 10 7 290 59 ENST00000397111.9 ENST00000299441.5 upstream downstream duplicates(3),mismatches(16) CTGAAGCGGCACAGCTCTTGGAGGATGTTCAGGCCGCCCTGAAG___CCATTTTCAGTAAAATTAAATGAGACCACGGATCCCGATAAAAAGCAGATGCTCGAACGGATTCAGCACGCAGTGCAGCTTGCCACAGAGCCACTTGAGAAAGCTGTGCAGTCCAGACTCACGGGAGAGGAAGTCAACAGCTGTGTGGAG|GTGACAGCCACAGACGCGGATAGTGGCCCATTTGGCCTCCTCTCCTATTCCTTGGGTGCTGGACTTGGGTCCTCCGGATCTCCCCCATTCCGCATTGATGCCCACAGCGGTGATGTGTGCA EAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVE|VTATDADSGPFGLLSYSLGAGLGSSGSPPFRIDAHSGDVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1050 GPR39::NCKAP5 ENSG00000183840.8::ENSG00000176771.18 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ NCKAP5 ENSG00000176771.18 protein_coding - + chr2:132671788-133568463:- chr2:133022824:+ chr2:133429361-134326034:- chr2:133780397:+ chr2:132473935,chr2:132473932 chr2:133011099,chr2:133011097 NA NA chr2:133231508,chr2:133231505 chr2:133768672,chr2:133768670 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none 7_transmembrane_receptor_(rhodopsin_family)(79%)| 7tm_1(0%)| 8 12 20 152 68 ENST00000329321.4 unknown downstream upstream duplicates(5),mismatches(3) TCCAGCACCCGCCACCACGAGCAGCCCGAGACCTCCAATATGTCCATCTGTACCAACCTCTCCAGCCGCTGGACCGTGTTCCAGTCCAGCATCTTCGGCGCCTTCGTGGTCTACCTCGTGGTCCTGCTCTCCGTAGCCTTCATGTGCTGGAACATGATGCAGGTGCTCATGAAAAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCATCATCTTCCTGA|CTCAGCCAAAGAACCAAGAAGGATGAAGGGAAGCCATCTTCCTCGCCCCTACACTAGCAAACTCTGTATTACCTTCTCTGCTGGCTCACTTTGATGAGGCAAACTGCCACaTTGGAGAGGCCCATGTGGCATTGAACTAAGAGCTGCAACTGGCCATTAGGGAGTGAATCCCACCAACAGCAAATGAGCTTGGAAGCCAG SSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFL|tqpknqeg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1051 FLRT3::MACROD2 ENSG00000125848.10::ENSG00000172264.19 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FLRT3 ENSG00000125848.10 protein_coding - - chr20:14322985-14337614:- chr20:14337404:- chr20:14303631-14318260:- chr20:14318050:- MACROD2 ENSG00000172264.19 protein_coding + - chr20:13995369-16053197:+ chr20:14417830:- chr20:13976015-16033842:+ chr20:14398476:- chr20:14337340,chr20:14337342 chr20:14429423,chr20:14429422 NA NA chr20:14317986,chr20:14317988 chr20:14410069,chr20:14410068 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none Macro(82%)| 6 9 5 144 34 ENST00000341420.5 unknown upstream downstream mismatches(1) GCAGGACAAGCTCAGCCTGCAGCTGCCGTGGGCTTTGTGTGGACTGGACGCAGAGCTTGGGAGACGGGGGAGGGCTATTACTCCAATTCACTGTCAATGGAATTACAGCTATAGCGGCAGTGTATATAGGATTGCTTTTTCTCGTCTTCCTG|AAACTCTGAGCTTTGGGATTGACTATGATGGACAAGTCTTGAAGAAGGATTCAAAACAGAAGTAATACAGCACTCAATCTCAACTTAAATGCAGGTCAGCTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1052 GOLGA5::CYP46A1 ENSG00000066455.13::ENSG00000036530.9 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GOLGA5 ENSG00000066455.13 protein_coding + + chr14:92794305-92839947:+ chr14:92810377:+ chr14:93260650-93306292:+ chr14:93276722:+ CYP46A1 ENSG00000036530.9 protein_coding + + chr14:99684298-99727301:+ chr14:99699466:+ chr14:100150635-100193638:+ chr14:100165803:+ chr14:92810672,chr14:92810669 chr14:99692437,chr14:99692431 NA NA chr14:93277017,chr14:93277014 chr14:100158774,chr14:100158768 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Cytochrome_P450(86%) |p450(64%) 2 3 2 369 12 ENST00000163416.7 ENST00000261835.8 downstream upstream mismatches(1) CGCACAGAAGCATTAGAAGCCTTACAGAGTGAAAAATCACG___AATAATGCAGGATCAAAGTGAAGGTAACAGCCTGCAGAATCAAGCTCTGCAGACTcTTCAGGAGAGACTGCATGAAGCGGATGCCACTCTGAAGAGAGAGCAGGAGAGCTATAAACAGATGCAG|AAGTTCCTGATGTCAACCAAGTACAACAAGGACTCCAAGATGTACCGTGCGCTCCAGACTGTGTTTGGTGAGAG___ACTCTTCGGCCAAGGCTTGGTGTCCGAATGCAACTATGAGCG...CAAGCAGCGGAGAGTCATAGACCTGGCCTTCAGCCGGAG___ACCACGGATCCCTGAAGGCAGAAGACGCACCCTGTCCCTGAGTCCTGCGCCCAGCACCAGGC RTEALEALQSEKSRIMQDQSEGNSLQNQALQTlQERLHEADATLKREQESYKQMQ|KFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE golgi autoantigen, golgin subfamily a, 5 (PTC5) 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1059 LGMN::SLC24A4 ENSG00000100600.15::ENSG00000140090.18 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LGMN ENSG00000100600.15 protein_coding - - chr14:92703807-92748679:- chr14:92732649:- chr14:93170152-93215024:- chr14:93198994:- SLC24A4 ENSG00000140090.18 protein_coding + - chr14:92322581-92501481:+ chr14:92388951:- chr14:92788925-92967825:+ chr14:92855295:- chr14:92729837,chr14:92729845 chr14:92393906,chr14:92393905 NA NA chr14:93196182,chr14:93196190 chr14:92860250,chr14:92860249 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Peptidase_C13_family(7%)| Peptidase_C13(0%)| 8 10 7 1377 32 ENST00000334869.9 unknown upstream downstream duplicates(2),mismappers(1),mismatches(2) GCCGCCGCGAGTTCTCACGGTCCCGCCGGCGCCACCACCGCGGTCACTCACCGCCGCCGCCGCCACCACTGCCACCACGGTCGCCTGCCACAG___GTGTCTGCAATTGAACTCCAAGGTGCAGAATGGTTTGGAAAGTAGCTGTATTCCTCAGTGTGGCCCTGGGCATTGGTGCCGTTCCTATAGATGATCCTGAAGATGGAGGCAAGCACTGGGTGGTGATCGTGGCAGGTTCAAATGGCTGGTATAATTATAGGCACCAG|AGCAAACTCAACGCAAAGTCTGGACTGGGGTTCTAGGGCCCCAGAGGCCCTCTCTGCTCCGCATGCAGGCTGCCCAGAGGCAGGAGCAAGATGTCTCCTGGGCCCCAGTTTTGGTCTGGGGGCCACTCTGGGGTCTGAAGCCCTTGCCTCAAATACCTGCATACCTGCTAGTCTCAACATCCCTCAGGGTTGATAAAGCAAGTCCTGCGGTCATGACCTAGAACTGGTACCACCTGCCC MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQ|sklnaksglgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1067 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 173 TRUE 71 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10805967:+ chr19:10828731-10944164:+ chr19:10916643:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10682537:+ chr19:10764980-10803076:+ chr19:10793213:+ chr19:10810267 chr19:10682260 NA NA chr19:10920943 chr19:10792936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Dynamin_central_region(100%),Dynamin_family(100%)|Double-stranded_RNA_binding_motif(56%) Dynamin_M(100%),Dynamin_N(100%)|dsrm(34%) 4 2 1 656 1615 ENST00000355667.11 ENST00000589998.6 downstream upstream none ACTTACATCCGGGAACGGGAGGGGAGAACGAAGGACCAG___ATTCTTCTGCTGATCGACATTGAGCAGTCCTACATCAACACGAACCATGAGGACTTCATCGGGTTTGCCAA___TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG|GTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTG...CTGTCTCCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG___CAGGGGCCGATCCTGACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACGAG TYIREREGRTKDQILLLIDIEQSYINTNHEDFIGFANAQQRSTQLNKKRAIPNQ|VLQDMGLPTGAEGRDSSKGEDSAEETEAKPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-638,hsa-mir-4748 chr19:10718404-10718503:+,chr19:10780254-10780335:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,FALSE 10798022|10799855|10799226,10787839 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 1068 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 173 TRUE 71 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10808580:+ chr19:10828731-10944164:+ chr19:10919256:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10682537:+ chr19:10764980-10803076:+ chr19:10793213:+ chr19:10810267 chr19:10682260 NA NA chr19:10920943 chr19:10792936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Dynamin_central_region(100%),Dynamin_family(100%)|Double-stranded_RNA_binding_motif(56%) Dynamin_M(100%),Dynamin_N(100%)|dsrm(34%) 1 0 1 11 1615 ENST00000355667.11 ENST00000588657.6 downstream upstream none ATCAACACGAACCATGAGGACTTCATCGGGTTTGCCAA___TGCCCAGCAGAGGAGCACGCAGCTGAACAAGAAGAGAGCCATCCCCAATCAG___GGGGAGATCCTG|GTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTG INTNHEDFIGFANAQQRSTQLNKKRAIPNQGEIL|VLQDMGLPTGAEGRDSSKGEDSAEETEAKPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-638,hsa-mir-4748 chr19:10718404-10718503:+,chr19:10780254-10780335:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,FALSE 10798022|10799855|10799226,10787839 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 1069 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 173 TRUE 71 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10808580:+ chr19:10828731-10944164:+ chr19:10919256:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10683125:+ chr19:10764980-10803076:+ chr19:10793801:+ chr19:10810267 chr19:10682260 NA NA chr19:10920943 chr19:10792936 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication low none Dynamin_central_region(100%),Dynamin_family(100%)|Double-stranded_RNA_binding_motif(52%) Dynamin_M(100%),Dynamin_N(100%)|dsrm(32%) 1 0 0 11 1632 ENST00000683738.1 ENST00000588657.6 downstream upstream none GGGAACGGGAGGGGAGAACGAAGGACCAG___ATTCTTCTGCTGATCGACATTGAGCAGTCCTACATCAACACGAACCATaAGGACTTCATaGGGTTTGCCAAG...AGGGGGAGATCCTG|AACGTAAAACAGCAGGGGCCGATCCTGACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-638,hsa-mir-4748 chr19:10718404-10718503:+,chr19:10780254-10780335:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,FALSE 10798022|10799855|10799226,10787839 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 1070 HSP90B1::TTC41P ENSG00000166598.16::ENSG00000214198.8 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HSP90B1 ENSG00000166598.16 protein_coding + + chr12:103930107-103953931:+ chr12:103934287:+ chr12:104323885-104347709:+ chr12:104328065:+ TTC41P ENSG00000214198.8 transcribed_unitary_pseudogene - + chr12:103843749-103930211:- chr12:103929912:+ chr12:104237527-104323989:- chr12:104323690:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' medium none Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(96%)| HATPase_c(31%),HATPase_c_3(100%)| 2 4 1 6530 14 ENST00000550595.2 unknown downstream upstream none TGGCCAGTCAACTTCTGAATTGATTGGCCAGTTTGGTGTCGGTTTCTATTCCGCCTTCCTTGTAGCAGATAAGGTTATTGTCACTTCAAAACACAACAACGATACCCAGCACATCTGGGAGTCTGACTCCAATGAATTTTCTGTAATTGCTGACCCAAGAGGAAACACTCTAGGACGGGGAACGACAATTAC|CGCCGCCACACGAGAAAGCTGGCCGCGAAAGTCGTGCTGGAATCACTTCCAACGAAACCCCAGGCATAGATGGGAAAGGGTGAAGAACACGTTGCCATGGCTACCGTTTCCCCGGTCACGGAATAAACGCTCTCTAG...ACATTCATTGGACGTTTTCCCTTAGAGGCCAAGGCCGCCCAGGCAAAGGGGCGGTCCCACGTGTGAGGGGCCCGCGGAGCCATTTGATTGGAGAAAAGCTG GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTIt|aatreswprkscwnhfqrnprhrwervkntlpwlpfprsrnkrsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3652 chr12:103930425-103930555:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1081 NEBL::DNAJC1 ENSG00000078114.19::ENSG00000136770.11 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20957731:- chr10:21068902-21581940:- chr10:21246660:- DNAJC1 ENSG00000136770.11 protein_coding - - chr10:21756548-22003769:- chr10:21929141:- chr10:22045477-22292698:- chr10:22218070:- chr10:20936883 chr10:21947078 NA NA chr10:21225812 chr10:22236007 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none LIM_domain(100%),Nebulin_repeat(10%)|DnaJ_domain(83%),Myb-like_DNA-binding_domain(100%) LIM(100%),Nebulin(3%)|DnaJ(9%),Myb_DNA-binding(100%) 0 1 1 52 455 ENST00000675747.1 ENST00000376980.8 upstream downstream none CAGATGACAAAATTGTGTGTTTTAAAGACTGACTGAAATG|GATGCATCATCTGCAGACATCAGAAAAGCATATCGTAAGCTTTCACTAACTTTACATCCAGACAAGAATAAAGATGAAAATGCAGAAACTCAGTTTAGACAA___TTGGTGGCCATTTATGAAGTTTTAAAGGATGATGAACGAAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 21177026 FALSE 22055238 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1116 BAZ1A::AKAP6 ENSG00000198604.11::ENSG00000151320.11 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 106 FALSE NA FALSE NA BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34810935:- chr14:35221937-35344853:- chr14:35280141:- AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32773678:+ chr14:32798504-33306890:+ chr14:33242884:+ chr14:34809192,chr14:34809194,chr14:34809194,chr14:34809197 chr14:32766217,chr14:32766178,chr14:32766215,chr14:32766215 NA NA chr14:35278398,chr14:35278400,chr14:35278400,chr14:35278403 chr14:33235423,chr14:33235384,chr14:33235421,chr14:33235421 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%)| WAC_Acf1_DNA_bd(100%)| 9 9 12 601 258 ENST00000358716.8 ENST00000280979.9 upstream upstream duplicates(8),mismatches(1) ATTTTGTCGAAGAAACTGTGGAAGTCATTAGGAACAATGGTGCAAG___GTTGCAGTGTAGGATTTTGGAAGTCCTCCCTCCATCACATCAAAATGGTTTTGCTAATGGACATGTTAACAGTGTGGATGGAGAAACTATTATCATCAGTGATAGTGATGATTCAGAAACACAAAGCTGTTCTTTTCAAAATGG___GAAGAAAAAAGATGCAATTGATCCCTTACTATTCAAGTATAAAGTGCAACCCACTAAAAAAGAATTACATGAGTCTGCTATTGTTAAAGCAACACAAATCAG|TCCCTCTGTCGTGAAATCAAGCAACGACGTCGAGGAGTTGCCTCCATTCTGCGACTATGCCAGCATCTTTTGGATGACCGGGAGACTTGCAATCTGAATGCAGACCACCAGCCCATGCAGCTGATCATTGTAAATCTTGAAAGAAGGTGGGAAGCCATTGTCATGCAAGCCGTCCAGTGGCAAACACGTCTACAAAAGAAGATGGGAAAGGAATCT___GAGACTTTGAATGTGATTGATCCTGGCTTGATGGACCTAAATGGGATGAGTGAGG FVEETVEVIRNNGARLQCRILEVLPPSHQNGFANGHVNSVDGETIIISDSDDSETQSCSFQNGKKKDAIDPLLFKYKVQPTKKELHESAIVKATQIs|psvvkssndveelppfcdyasifwmtgrlai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 1117 STRN3::STXBP6 ENSG00000196792.12::ENSG00000168952.16 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 182 TRUE 72 STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- STXBP6 ENSG00000168952.16 protein_coding - - chr14:24809454-25050147:- chr14:24974850:- chr14:25278660-25519353:- chr14:25444056:- chr14:31018299,chr14:31018366,chr14:31018343,chr14:31018334 chr14:25044584,chr14:25044584,chr14:25044584,chr14:25044584 NA NA chr14:31487505,chr14:31487572,chr14:31487549,chr14:31487540 chr14:25513790,chr14:25513790,chr14:25513790,chr14:25513790 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Striatin_family(23%)|Exocyst_complex_component_SEC3_N-terminal_PIP2_binding_PH(100%),Synaptobrevin(100%) Striatin(0%)|Sec3-PIP2_bind(100%),Synaptobrevin(100%) 3 9 11 332 106 ENST00000355683.9 ENST00000323944.10 upstream downstream duplicates(10),mismatches(1) GGAGCGGGTCCCGCGGCAGGCCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|ATTCACTGCGTGCTGTCCTCACTTGTTCTACAATGAGTGCCAAATCTGCTATCAGCAAGGAAATTTTTGCACCTCTTGATGAAAGGATGCTGGGAGCTGTCCAAGTCAAGAGGAGGACAAAGAAAAAGATTCCTTTCTTGGCAACTGGAGGTCAAGGCGAATATTTAACTTATATCTGCCTGTCAG___TGACAAACAAGAAACCCACACAGGCGTCCATCACAAAGGTCAAACAGTTTGAAGGCTCCACATCATTTGTTCGGAGATCACAGTGGATGCTCGAGCAGCTTCGCCAGGTTAATGGTATCGATCCTAATGGG___GATTCGGCA GAGPAAGPELSRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQ|ihcvlsslvlq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1118 STRN3::STXBP6 ENSG00000196792.12::ENSG00000168952.16 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 182 TRUE 72 STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- STXBP6 ENSG00000168952.16 protein_coding - - chr14:24809454-25050147:- chr14:24857157:- chr14:25278660-25519353:- chr14:25326363:- chr14:31018299,chr14:31018366,chr14:31018343,chr14:31018334 chr14:25044584,chr14:25044584,chr14:25044584,chr14:25044584 NA NA chr14:31487505,chr14:31487572,chr14:31487549,chr14:31487540 chr14:25513790,chr14:25513790,chr14:25513790,chr14:25513790 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Striatin_family(23%)|Exocyst_complex_component_SEC3_N-terminal_PIP2_binding_PH(92%),Synaptobrevin(100%) Striatin(0%)|Sec3-PIP2_bind(0%),Synaptobrevin(100%) 0 3 3 332 290 ENST00000355683.9 ENST00000323944.10 upstream downstream none CAtGCCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|TGACAAACAAGAAACCCACACAGGCGTCCATCACAAAGGTCAAACAGTTTGAAGGCTCCACATCATTTGTTCGGAGATCACAGTGGATGCTCGAGCAGCTTCGCCAGGTTAATGGTATCGATCCTAATGGG___GATTCGGCAGAGTTTGATTTGTTGTTTGAAAATGCTTTTGACCAGTGGGTAGCCAG...GTCAGAAAAATGCcCCTTCgTCCAGATCCTCCACCATACCTGCCAGAGGTACCTCACGGACAGGAAGCCAGAGTTTATTAACTGCCAATCCAAAATTATGG cPELSRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1120 CLIP2::CACNA2D2 ENSG00000106665.16::ENSG00000007402.12 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 107 FALSE NA FALSE NA CLIP2 ENSG00000106665.16 protein_coding + + chr7:74289407-74405935:+ chr7:74397233:+ chr7:73703737-73820265:+ chr7:73811563:+ CACNA2D2 ENSG00000007402.12 protein_coding - - chr3:50362613-50504244:- chr3:50381126:- chr3:50400044-50541675:- chr3:50418557:- chr7:74399561,chr7:74399555,chr7:74399542 chr3:50381916,chr3:50381916,chr3:50381927 NA NA chr7:73813891,chr7:73813885,chr7:73813872 chr3:50419347,chr3:50419347,chr3:50419358 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none CAP-Gly_domain(100%)|Neuronal_voltage-dependent_calcium_channel_alpha_2acd(100%),VWA_N-terminal(38%),von_Willebrand_factor_type_A_domain(100%) CAP_GLY(100%)|VGCC_alpha2(100%),VWA(100%),VWA_2(100%),VWA_3(100%),VWA_N(2%) 2 5 8 39 11 ENST00000223398.11 ENST00000360963.7 downstream downstream duplicates(2) GTCGAGAGTTTGCGGGAGAAGCTCCTGGTGGCTGAGAACAGACTCCAGGCGGTCGAGGCCCTGTGCTCCTCCCAGCACACCCAC___ATGATTGAGTCGAATG...CCGGAAGACCCATGACGCCTCGGGCCAGCTAGTCCTCATCAGCCAGGAGCTGCTGCGGAAGGAGCG___GAGCCTGAACGAACTGCGGGTGTTGCTGCTGGAGGCCAATCGTCACTCCCCAGGGCCGGAGAGGGACCTGAGCCGTGAGGTACACAAGGCTGAGTGGCGGATCAAGGAGCAGAAACTCAAGGATGACATCCGGGGCCTGCGTGAAAAGCTGACCGGGCTG|CCACTGTCATCCTCAATGAGCTCAACTGGACAGAGGCCCTGGAGAATGTGTTCATGGAAAACCGCAGACAAGACCCCACACTGCTGTGGCAGGTCTTCGGCAGCGCCACAGGAGTCACTCGCTACTACCCGG___CCACCCCGTGGCGAGCCCCCAAGAAGATCGACCTGTACGATGTCCGAAGGAGACCCTG___GTATATCCAGGGGGCCTCGTCACCCAAAGACATGGTCATCATCGTGGATGT___GAGTGGCAGTGTGAGCGGCCTGACCCTGAAGCTGATGAAGACATCTGTCTGCGAGATGCTGGACACGCTGTCTGATGATGAC RKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGL|plsssmsstgqrpwrmcswktadktphccgrssaapqeslattrpprgepprrstctmsegdpgisrgprhpktwssswm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1130 NKX2-1-AS1::ZFHX2 ENSG00000253563.2::ENSG00000136367.15 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NKX2-1-AS1 ENSG00000253563.2 lncRNA + + chr14:36519278-36523016:+ chr14:36519679:+ chr14:36988483-36992221:+ chr14:36988884:+ ZFHX2 ENSG00000136367.15 protein_coding - - chr14:23520857-23556192:- chr14:23535374:- chr14:23990066-24025401:- chr14:24004583:- chr14:36521255,chr14:36521255 chr14:23552886,chr14:23552884 NA NA chr14:36990460,chr14:36990460 chr14:24022095,chr14:24022093 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none |Homeodomain(100%) |Homeodomain(100%),zf-C2H2(100%),zf-met(100%) 0 2 1 566 205 ENST00000521292.2 ENST00000419474.5 downstream downstream duplicates(1) CTCGGGGGCTGCCTCGCGTTTGTTTTAGCCCGGCGCCAGGTTTTAGGCAGCCACCAGAGGCGGGGCGTAAaCGCTAAAGCAACAAGACAATAGAAGCCTACATCTTGCCCGAGATAATTAGCTTACATGCTGATGACAAG|GGTACTGGCTGTCACGCTGACATGAGCCCCCAGCACTCCTCCGTCTACCATGGCCACCCTTAACTCAGCCTCTACCACTGGTACCACCCCCTCCCCTGGGCACAATGCCCCGTCCCTGCCTTCGGACACCTTCTCCTCC...GAACATGAGGTCCTCAGAGCCAGGGGGACAGCTCCTGGAGTCGGGCTGTGGCCTCGTCCCACCAAAGGAGATTGGGGAGCCCCAGGAAGGGCCTGACTGTGGTCACTTCCCACCAAATGACCCAGGGGTGGAAAAGGACAAGGAGCAGGAGGAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1133 ZFHX2-AS1::NKX2-1 ENSG00000157306.14::ENSG00000136352.20 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFHX2-AS1 ENSG00000157306.14 lncRNA + + chr14:23511760-23560778:+ chr14:23514416:+ chr14:23980969-24029987:+ chr14:23983625:+ NKX2-1 ENSG00000136352.20 protein_coding - - chr14:36516392-36521149:- chr14:36519370:- chr14:36985597-36990354:- chr14:36988575:- chr14:23552886,chr14:23552884 chr14:36521255,chr14:36521255 NA NA chr14:24022095,chr14:24022093 chr14:36990460,chr14:36990460 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Homeodomain(100%) |Homeodomain(100%) 4 1 1 48 1725 ENST00000553985.1 ENST00000354822.7 downstream downstream none GGGAGAACTTGTTGGGGCTGGCAATCTGGCCCTTTGTCAGAGTATTGAAGGAGACAGCAAGAGGACCAGATGTGAG___GCATGGGGAGTGGAGCAACAGACGGAGAGTGGCATGAAGACACAAAGGAGGAAGCACACCATTGCCAAGACCCCAAGGAAGAAGGATGGAAAGCGCTGGCAGTCCTGCCTGGCCCCCAGCCAGTTCCCTGCTGAAGATGGCCAGATCCCCTTGTCTG|CCGCCGCCGAATCATGTCGATGAGTCCAAAGCACACGACTCCGTTCTCAGTGTCTGACATCTTGAGTCCCCTGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCGGCGGCCTCGGGGCTCCGCTGGCGGCGTACAGGCAGGGCCAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE NK2 homeobox 1 1 NSCLC epithelial oncogene, TSG amplification 1134 ZFHX2-AS1::SFTA3 ENSG00000157306.14::ENSG00000257520.2 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFHX2-AS1 ENSG00000157306.14 lncRNA + + chr14:23511760-23560778:+ chr14:23514416:+ chr14:23980969-24029987:+ chr14:23983625:+ SFTA3 ENSG00000257520.2 protein_coding - - chr14:36473207-36521149:- chr14:36519370:- chr14:36942412-36990354:- chr14:36988575:- chr14:23552886,chr14:23552884 chr14:36521255,chr14:36521255 NA NA chr14:24022095,chr14:24022093 chr14:36990460,chr14:36990460 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none none none 4 1 1 48 1725 ENST00000553985.1 ENST00000546983.2 downstream downstream none GGGAGAACTTGTTGGGGCTGGCAATCTGGCCCTTTGTCAGAGTATTGAAGGAGACAGCAAGAGGACCAGATGTGAG___GCATGGGGAGTGGAGCAACAGACGGAGAGTGGCATGAAGACACAAAGGAGGAAGCACACCATTGCCAAGACCCCAAGGAAGAAGGATGGAAAGCGCTGGCAGTCCTGCCTGGCCCCCAGCCAGTTCCCTGCTGAAGATGGCCAGATCCCCTTGTCTG|CCGCCGCCGAATCATGTCGATGAGTCCAAAGCACACGACTCCGTTCTCAGTGTCTGACATCTTGAGTCCCCTGGAGGAAAGCTACAAGAAAGTGGGCATGGAGGGCGGCGGCCTCGGGGCTCCGCTGGCGGCGTACAGGCAGGGCCAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1154 ENSG00000285517::CAPRIN2 ENSG00000285517.1::ENSG00000110888.19 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000285517 ENSG00000285517.1 lncRNA + - chr12:30795458-30879268:+ chr12:30870564:- chr12:30948392-31032202:+ chr12:31023498:- CAPRIN2 ENSG00000110888.19 protein_coding - - chr12:30709552-30823302:- chr12:30755511:- chr12:30862486-30976236:- chr12:30908445:- NA NA NA NA NA NA NA NA antisense sense unknown intron intron deletion/read-through/3'-3' low none |C1q_domain(100%),Caprin-1_dimerization_domain(100%),Cytoplasmic_activation/proliferation-associated_protein-1_C_term(100%) |C1q(100%),Caprin-1_C(100%),Caprin-1_dimer(100%) 0 0 3 36 4 unknown ENST00000695402.1 upstream downstream duplicates(1),mismappers(1) CCTGGTGTCAGTTTCAGAAAGACTTAAGTGGATCCTGCATCAGGAGGGAGCAGACACCGGAGAAAGAAAAACAAGTTGTGCTGTTTGAG___GAAGCAAGTTGGACCTGC...GCTGACCACAGG|GTTGCGAAGTCACCTACTCCGTTTTTATGGCGATGCTGATTTGGGGCATTCTGCTCTTACAGGCTGATTCCCCG___TCACCTTCAGGCCAT...ACTCATATGCCTTAAACACAAAATTAGAAACATCGAGAAAAAGAAG___CTCAAACTGGAGGATTATAAGGATCGCCTGAAAAGTGGAGAGCATCTTAATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1157 DCBLD1::ENSG00000285446 ENSG00000164465.19::ENSG00000285446.1 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DCBLD1 ENSG00000164465.19 protein_coding + + chr6:117453817-117569858:+ chr6:117545597:+ chr6:117774980-117891021:+ chr6:117866760:+ ENSG00000285446 ENSG00000285446.1 protein_coding + + chr6:116399395-116463696:+ chr6:116463283:+ chr6:116720558-116784859:+ chr6:116784446:+ chr6:117568960,chr6:117568961 chr6:116444805,chr6:116444803 NA NA chr6:117890123,chr6:117890124 chr6:116765968,chr6:116765966 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none CUB_domain(100%),F5/8_type_C_domain(100%),LCCL_domain(100%)| CUB(100%),F5_F8_type_C(100%),LCCL(100%)|Ca_hom_mod(13%) 1 0 1 161 289 ENST00000296955.12 ENST00000644499.1 downstream upstream none GGGATCTTTGCAGCCTTTAGAAA___GAAGAAGAAGAAAGGAAGTCCGTATGGATCAGCAGAGGCTCAGAAAACAG___ACTGTTGGAAGCAGATTAAATATCCCTT...CATCAGTCAGCTGAGTTTACCATCAGCTATGATAATGAGAAGGAGATGACACAAAAGTTAGATCTCATCACAAGTGATATGGCAG|GTGTTGGGCTGGATCTTGATAGCAGTTGTTATCATCATTCTTCTGATTTTTACATCTGTCACCCGATGCCTATCTCCAGTTAGTTTTCTGCAGCTGAAATTCTGGAAAATCTATTTGGAACAGGAG HQSAEFTISYDNEKEMTQKLDLITSDMA|gvgldldsscyhhssdfyichpmpiss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1167 STRN3::LINC02286 ENSG00000196792.12::ENSG00000258098.2 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- LINC02286 ENSG00000258098.2 lncRNA - - chr14:25124467-25156314:- chr14:25127281:- chr14:25593673-25625520:- chr14:25596487:- chr14:30969115,chr14:30969117 chr14:25131654,chr14:25131653 NA NA chr14:31438321,chr14:31438323 chr14:25600860,chr14:25600859 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Striatin_family(23%)| Striatin(0%)| 1 0 0 332 5 ENST00000355683.9 ENST00000665826.1 upstream downstream none CGGCAGGCCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|GTATTTAATTGTTCCCTGAGGTTTAAGGCAGTGGACTGAGGATAATACAGGC AGPELSRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQ|vfncslrfkavd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1172 ABL1::DDX31 ENSG00000097007.20::ENSG00000125485.18 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130875052:+ chr9:133588430-133763062:+ chr9:133750439:+ DDX31 ENSG00000125485.18 protein_coding - + chr9:132592997-132670401:- chr9:132662686:+ chr9:135468384-135545788:- chr9:135538073:+ chr9:130875377,chr9:130875376 chr9:132662542,chr9:132662538 NA NA chr9:133750764,chr9:133750763 chr9:135537929,chr9:135537925 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none Protein_kinase_domain(72%),SH2_domain(100%),SH3_domain(100%)| PK_Tyr_Ser-Thr(70%),Pkinase(70%),SH2(100%),SH3_1(100%),SH3_2(100%)| 34 61 99 477 189 ENST00000372348.9 unknown downstream upstream duplicates(26),low_entropy(1),mismatches(6) TGGCCACTCAGATCTCGTCAGCCATGGAGTACCTGGAGAAGAAAAACTTCATCCACAG___AGATCTTGCTGCCCGAAACTGCCTGGTAGGGGAGAACCACTTGGTGAAGGTAGCTGATTTTGGCCTGAGCAGGTTGATGACAGGGGACACCTACACAGCCCATGCTGGAGCCAAGTTCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAACAAGTTCTCCATCAAGTCCGACGTCTGGG|CCTTTGCTTGCTGCGTTGTTCCCAGAAGGAAAGATCAACAAGAGATGCATTAGTCCATGAAAACAGAGCTCGGAGTGAAGCCTGACTGCCCACAGAATTGCATCTCTCCCTGCAGAGATCATTATGCCCCATATGTCAAGCAACAGTTTAGGGTTTGCAATCAGACTCTTTGACTCAGCTTCTTCCAAAAGGTAAAGAAAAGAAAAAAGAAAAAAGTCTCAGCTCACTCATCTACCAGACCTC ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVW|afaccvvprrkdqqemh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase ABL1 TK Abl P00519 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 1173 PRKCZ::KAZN ENSG00000067606.17::ENSG00000189337.17 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKCZ ENSG00000067606.17 protein_coding + + chr1:2050411-2185395:+ chr1:2135347:+ chr1:1981850-2116834:+ chr1:2066786:+ KAZN ENSG00000189337.17 protein_coding + - chr1:13892792-15118043:+ chr1:14188766:- chr1:14219287-15444539:+ chr1:14515261:- chr1:2135947,chr1:2135942 chr1:14193246,chr1:14193251 NA NA chr1:2067386,chr1:2067381 chr1:14519741,chr1:14519746 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none PB1_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(19%)| C1_1(0%),PB1(100%)| 17 51 44 113 94 ENST00000378567.8 unknown downstream downstream duplicates(15),low_entropy(2),mismappers(2),mismatches(7) ATGGAGCTGGAAGAGGCTTTCCGCCTGGCCCGTCAGTGCAGGGATGAAGGCCTCATCATTCATG___TTTTCCCGAGCACCCCTGAGCAGCCTGGCCTGCCATGTCCGGGAGAAGACA___AATCTATCTACCGCCGGGGAGCCAGAAGATGGAGGAAGCTGTACCGTGCCAACGGCCACCTCTTCCAAGCCAAGCGCTTTAACAGG|ACTAACACTGGTTTACATTTCCTGAGTGCATGCCACCAGGGAAGAAATGCTTTGCCCATGGATAATCTATGGGTACATAATTGAGAACTGACTACTGGCTAGATTCTATGAGGCTGCTCTTCCG___GCTGGCAACATCCCTGGCACATAACAGATGCTCAATAGAAAAAGGAGAAAGTGAG MELEEAFRLARQCRDEGLIIHVFPSTPEQPGLPCPGEDKSIYRRGARRWRKLYRANGHLFQAKRFNR|tntglhflsachqgrnalpmdnlwvhn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Protein kinase C zeta type AGC PKC PKCi Q05513 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1174 PAK4::SLC24A4 ENSG00000130669.17::ENSG00000140090.18 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 108 TRUE 190 TRUE 73 PAK4 ENSG00000130669.17 protein_coding + + chr19:39125770-39182816:+ chr19:39125919:+ chr19:39616410-39673456:+ chr19:39616559:+ SLC24A4 ENSG00000140090.18 protein_coding + + chr14:92322581-92501481:+ chr14:92433912:+ chr14:92788925-92967825:+ chr14:92900256:+ chr19:39166001,chr19:39166002 chr14:92425799,chr14:92425797 NA NA chr19:39656641,chr19:39656642 chr14:92892143,chr14:92892141 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Sodium/calcium_exchanger_protein(100%) |Na_Ca_ex(100%) 3 62 44 348 93 ENST00000360442.8 ENST00000532405.6 downstream upstream duplicates(11),low_entropy(1),mismatches(13) ATTCAACATGGCGGCGGGAGTGTCCGCGGTGGTGGCGGTGCAAGAGAGCTGAGGGAGGCGCGAGGGCGCGGAGTTCCAGGTCGAGCAGTTAGGCCGCGAGCGACTGCGGCGCCGAGCCG|CGATTCACGAGTTCCCCACAGATCTGTTCTCCAATAAGGAGCGACAGCACGGAGCCGTCCTGCTGCACATCCTTGGT___GCTCTGTATATGTTCTATGCCTTGGCCATAGTGTGCGATGACTTCTTTGTTCCGTCTCTAGAGAAGATCTGTGAG___AGACTCCATCTGAGCGAAGATGTGGCTGGAGCCACCTTCATGGCTGCAGGAAGCTCAACGCCAGAGCTGTTTGCGTCTGTTATTG___GGGTGTTCATCACCCAcGGGGACGTCGGGGTGGGCACCATCGTGGGCTCTGCTGTGTTCAACATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 4 STE STE20 PAKB O96013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1175 PAK4::SLC24A4 ENSG00000130669.17::ENSG00000140090.18 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 190 TRUE 73 PAK4 ENSG00000130669.17 protein_coding + + chr19:39125770-39182816:+ chr19:39125879:+ chr19:39616410-39673456:+ chr19:39616519:+ SLC24A4 ENSG00000140090.18 protein_coding + + chr14:92322581-92501481:+ chr14:92433912:+ chr14:92788925-92967825:+ chr14:92900256:+ chr19:39166001,chr19:39166002 chr14:92425799,chr14:92425797 NA NA chr19:39656641,chr19:39656642 chr14:92892143,chr14:92892141 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Sodium/calcium_exchanger_protein(100%) |Na_Ca_ex(100%) 0 1 0 330 93 ENST00000602004.1 ENST00000532405.6 downstream upstream duplicates(1) GGAGGCGCGAGGGCGCGGAGTTCCAG|CGATTCACGAGTTCCCCACAGATCTGTTCTCCAATAAGGAGCGACAGCACGGAGCCGTCCTGCTGCACATCCTTG...CAGGAAGCTCAACGCCAGAGCTGTTTGCGTCTGTTATTG___GtGTGTTCATCACCCAcGGGGACGTCGGGGTGGGCACCATCGTGGGCTCTGCTGTGTTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 4 STE STE20 PAKB O96013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1183 ANO6::DDN-AS1 ENSG00000177119.17::ENSG00000257913.4 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 191 TRUE 74 ANO6 ENSG00000177119.17 protein_coding + + chr12:45215987-45482280:+ chr12:45228273:+ chr12:45609770-45876063:+ chr12:45622056:+ DDN-AS1 ENSG00000257913.4 lncRNA + + chr12:48998367-49019241:+ chr12:49009309:+ chr12:49392150-49413024:+ chr12:49403092:+ chr12:45232893,chr12:45232892 chr12:49004271,chr12:49004267 NA NA chr12:45626676,chr12:45626675 chr12:49398054,chr12:49398050 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site deletion high none none none 2 2 7 14 43 ENST00000550630.5 ENST00000547395.1 downstream upstream duplicates(2) CGGCGCTGGCTGGGCTCAGCGGCCCCTGAGCCCAAGCGACACACGCCCCGCGGTCCCCGATCCGGCCCCTGGGAGAGCCGCGCCGTTCTGGAACCCGGGAGCCCCCAACTTCGCGCCAAGTTCGGAGCCGCCTTCTGAGGGAGACATGAAAAAGATGAGCAGGAATGTTTTGCTACAAATGGAGGAGGAGGAGGACGACGACGATGGGGATATCG___GGCTGAAGTGCAGTAGTGGAGTAGCGCAATCATGGCTCACTGTAGCATTGACTCCCAGACTCAATTGATCCTCTTACCTCAACCTCCTGCGTATCTGGGACCACAG|AGACAGGGTCTTGCTGTGTTGCTGAGCTGGTCTTGAACTCCTGGCCTCCCGCCTCAGTCTCCCAAAGTGCTGGGATTACAG___GGAATGTGACTTCACTGGACGCAGTATAAAGATCTTCAGATGTCCTCCTGCCGGGGATTGCAGGGATCACAGAAAGACCATCGAGGTCCAGGAGCTACCTGCAAGCGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1184 ANO6::DDN-AS1 ENSG00000177119.17::ENSG00000257913.4 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 191 TRUE 74 ANO6 ENSG00000177119.17 protein_coding + + chr12:45215987-45482280:+ chr12:45216391:+ chr12:45609770-45876063:+ chr12:45610174:+ DDN-AS1 ENSG00000257913.4 lncRNA + + chr12:48998367-49019241:+ chr12:49009309:+ chr12:49392150-49413024:+ chr12:49403092:+ chr12:45232893,chr12:45232892 chr12:49004271,chr12:49004267 NA NA chr12:45626676,chr12:45626675 chr12:49398054,chr12:49398050 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 1 5 3 303 43 ENST00000425752.6 ENST00000547866.1 downstream upstream none TGGGCATGCTCAGTCTCCGGGCTCCGCTCGGCAGGCGAGAGGCGTCCTCCGGCTCTGGGaTCCGGTCGGTGGGTGCCTCGGCTCGGCTTTCCCCcGCGCTGGCTGGGCTCAGCGGCCCCTGAGCCCAAGCGACACACGCCCCGCGGTCCCCGATCCGGCCCCTGGGAGAGCCGCGCCGTTCTGGAACCCGGGAGCCCCCAACTTCGCGCCAAGTTCGGAGCCGCCTTCTGAGGGAGACATGAAAAAGATGAGCAGGAATGTTTTGCTACAAATGGAGGAGGAGGAGGACGACGACGATGGGGATATCG|AGACAGGGTCTTGCTGTGTTGCTGAGCTGGTCTTGAACTCCTGGCCTCCCGCCTCAGTCTCCCAAAGTGCTGGGATTACAG___GCTTTCATCATGTTGCCCAGGCTGATGCTGAACTCCTGAGCTCAAGCAATCCACTTGCCTTGGC...TTTCTTTTTCCTCTTTTTAACTTCTACCCCAGAGCCTAATCCAGTACATAAAGTGTAAAGGCTAAATTAGAAAATCTATATAAAAATGCTTTGTAAACCATAATACATTTACAAGTAAGTAGAATATGAC...CTTCACTGGACGCAGTATAAAGATCTTCAGATGTCCTCCTGCCGGGGATTGCAGGGATCACAGAAAGACCATCGAGGTCCAGGAGCTACCTGCAAGCGGA MKKMSRNVLLQMEEEEDDDDGDI|etgsccvaelvlnswppasvsqsagitgfhhvaqadaellsssnplal NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1185 ANO6::DDN-AS1 ENSG00000177119.17::ENSG00000257913.4 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 191 TRUE 74 ANO6 ENSG00000177119.17 protein_coding + + chr12:45215987-45482280:+ chr12:45228273:+ chr12:45609770-45876063:+ chr12:45622056:+ DDN-AS1 ENSG00000257913.4 lncRNA + + chr12:48998367-49019241:+ chr12:49018236:+ chr12:49392150-49413024:+ chr12:49412019:+ chr12:45232893,chr12:45232892 chr12:49004271,chr12:49004267 NA NA chr12:45626676,chr12:45626675 chr12:49398054,chr12:49398050 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site deletion high none none none 0 2 5 14 54 ENST00000550630.5 ENST00000552933.2 downstream upstream none TTCGGAGCCGCCTTCTGAGGGAGACATGAAAAAGATGAGCAGGAATGTTTTGCTACAAATGGAGGAGGAGGAGGACGACGACGATGGGGATATCG___GGCTGAAGTGCAGTAGTGGAGTAGCGCAATCATGGCTCACTGTAGCATTGACTCCCAGACTCAATTGATCCTCTTACCTCAACCTCCTGCGTATCTGGGACCACAG|GGAATGTGACTTCACTGGACGCAGTATAAAGATCTTCAGATGTCCTCCTGCCGGGGATTGCAGGGATCACAGAAAGACCATCGAGGTCCAGGAGCTACCTGCAAGCGGAGATCCCTCTGGACGCCCCGTGCCTCACCCAGCAAAGCCGGCTCACAACCCTGCGCTCTCAAACCTCTAAAAGGGCTTGAGGTGCCAATAGGAAAGGAGGCCCGAGATTGCCACGGCATACGTGGGCCCCAAGGAGGGAGCCAGGAGTCACTGCCTGCTTGGGCTAAGGGTACCGCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1186 ANO6::DDN-AS1 ENSG00000177119.17::ENSG00000257913.4 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 191 TRUE 74 ANO6 ENSG00000177119.17 protein_coding + + chr12:45215987-45482280:+ chr12:45216391:+ chr12:45609770-45876063:+ chr12:45610174:+ DDN-AS1 ENSG00000257913.4 lncRNA + + chr12:48998367-49019241:+ chr12:49018236:+ chr12:49392150-49413024:+ chr12:49412019:+ chr12:45232893,chr12:45232892 chr12:49004271,chr12:49004267 NA NA chr12:45626676,chr12:45626675 chr12:49398054,chr12:49398050 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 0 4 2 303 54 ENST00000425752.6 ENST00000552933.2 downstream upstream none GCGCTGGCTGGGCTCAGCGGCCCCTGAGCCCAAGCGACACACGCCCCGCGGTCCCCGATCCGGCCCCTGGGAGAGCCGCGCCGaTCTGGAACaCGGGAGCCCCCAACTTCGCGCCAAGTTCGGAGCCGCCTTCTGAGGGAGACATGAAAAAGATGAGCAGGAATGTTTTGCTACAAATGGAGGAGGAGGAGGACGACGACGATGGGGATATCG|GGAATGTGACTTCACTGGACGCAGTATAAAGATCTTCAGATGTCCTCCTGCCGGGGATTGCAGGGATCACAGAAAGACCATCGAGGTCCAGGAGCTACCTGCAAGCGGAGATCCCTCTGGACGCCCCGTGCCTCACCCAGCAAAGCCGGCTCACAACCCTGCGCTCTCAAACCTCTAAAAGGGCTTGAGGTGCCAATAGGAAAGGAGGCCCGAGATTGCCACGGCATACGTGGGCCCCAAGGAGGGAGCCAGGAGTCACTGCCTGCTTGGGCTAAGGGTACCGCGT MKKMSRNVLLQMEEEEDDDDGDI|gnvtsldav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1187 PRKAG1::ANO6 ENSG00000181929.13::ENSG00000177119.17 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKAG1 ENSG00000181929.13 protein_coding - - chr12:49002274-49018807:- chr12:49004507:- chr12:49396057-49412590:- chr12:49398290:- ANO6 ENSG00000177119.17 protein_coding + - chr12:45215987-45482280:+ chr12:45232354:- chr12:45609770-45876063:+ chr12:45626137:- chr12:49004267,chr12:49004271 chr12:45232892,chr12:45232893 NA NA chr12:49398050,chr12:49398054 chr12:45626675,chr12:45626676 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none CBS_domain(34%)| CBS(60%)| 3 2 6 324 15 ENST00000548065.7 unknown upstream downstream duplicates(1) ACGGgGTACGAGCTGCCCCTTTATGGGATAGTAAGAAGCAAAGTTTTGTGG___GCATGCTGACCATCACTGATTTCATCAATATCCTGCACCGCTACTATAAA...ATTTCTCCTAATGCCAG___CTTGTTTGATGCTGTCTCTTCATTAATTCGGAACAAGATCCACAGGCTGCCAGTTATTGACCCAGAATCAGGCAATACTTTGTACATCCTCACCCACAAGCGCATTCTGAAGTTCCTCAAATTGTTT|GCTGCCTACTTTGAGAACAGGGGCCACTTCAGTCTTCTTTGTTGCTCAATTTCTAGTACCTAACACAACACCTGACATACAGAAGGTGCTGAACAGATATCAG___ATTTAACAAAAACTTACTGATTGCCTACTACGCATCAGGCACTATGCTGCTCACTGAAGTGAAAGTTTTCCTCAAGATACTCCCAGTTTAATGGAAAAGACAAAAAGTGACAATGAGCTGTATAAGTG ISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLF|aayfenrghfsllccsisst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1188 ZNF404::CACNA1A ENSG00000176222.10::ENSG00000141837.22 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 192 TRUE 75 ZNF404 ENSG00000176222.10 protein_coding - - chr19:43872365-43901385:- chr19:43883956:- chr19:44376517-44405537:- chr19:44388108:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13519503:- chr19:13317256-13743839:- chr19:13630317:- chr19:43882491,chr19:43882498 chr19:13578559,chr19:13578563 NA NA chr19:44386643,chr19:44386650 chr19:13689373,chr19:13689377 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none |Ion_transport_protein(100%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage_gated_calcium_channel_IQ_domain(100%) |Ca_chan_IQ(100%),GPHH(100%),Ion_trans(100%),PKD_channel(100%) 5 1 3 34 2 ENST00000588094.1 ENST00000592864.3 upstream downstream duplicates(3) CTGCTGTGAATTAGAGACAGATTCCACCCTAGGCATCACTGATCTTGGCCTCTCTTGTATTGGGAAGGTCAACACTGTTCCAGTTTCTCTCCTACTCCCATCTGGTTGTGCTCGGTGAAGTAGGTGAGC...AAAGAATTTTTGCTACACATCTGAAAGCTAAAGTCCAG___GTGATGCCTTGATTACCTAGCTTTGGCTTCTCTGAACTCTGCTTCTCTGATAGAGGAAACCTGAAGAGAACTAGCATTTCTGAAACCATGGCCCGG|GAAGCTACCAGAGGATGTGCTTCACCCAAACAAGGGAGTAAACCAAGAAGAGGGAAACAGAGAACACTGGACTTAAGAAATCCAACAATGAGAAGCAAAGGGAATCTCCTGGATGATGATAAAGAGAGAGCCCAGGATGAAAGCTGTATGCCAGGGAAAGTCCTGATTAGACCATGTGACAAGTCTTCAGGAAAGACTGCTTCTG...TTAAGAGACTTGGGGGGTCAAATTTGCAATAAGTACCAAACAAAGAAGATTAAAAAATGATAAGTCCCAAGGGAAACAATATGTTGTAAAGAAAAAGTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1189 ZNF404::CACNA1A ENSG00000176222.10::ENSG00000141837.22 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 192 TRUE 75 ZNF404 ENSG00000176222.10 protein_coding - - chr19:43872365-43901385:- chr19:43883956:- chr19:44376517-44405537:- chr19:44388108:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13506225:- chr19:13317256-13743839:- chr19:13617039:- chr19:43882491,chr19:43882498 chr19:13578559,chr19:13578563 NA NA chr19:44386643,chr19:44386650 chr19:13689373,chr19:13689377 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none |Ion_transport_protein(100%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage_gated_calcium_channel_IQ_domain(100%) |Ca_chan_IQ(100%),GPHH(100%),Ion_trans(100%),PKD_channel(100%) 2 0 1 34 0 ENST00000588094.1 ENST00000664864.1 upstream downstream duplicates(2) CACTGATCTTGGCCTCTCTTGTATTGGGAAGGTCAACACTGTTCCAGTTTCTCTCCTACTCCCATCTGGTTGTGCTCGGTGAAGTAGGTGAGCAG___TGCTAC...CTAAAGTCCAG___GTGATGCCTTGATTACCTAGCTTTGGCTTCTCTGAACTCTGCTTCTCTGATAGAGGAAACCTGAAGAGAACTAGCATTTCTGAAACCATGGCCCGG|AATGGCCCGCTTCGGAGACGAGATGCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1190 ENSG00000288710::ANO6 ENSG00000288710.1::ENSG00000177119.17 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288710 ENSG00000288710.1 protein_coding - - chr12:49002274-49024075:- chr12:49004964:- chr12:49396057-49417858:- chr12:49398747:- ANO6 ENSG00000177119.17 protein_coding + - chr12:45215987-45482280:+ chr12:45230247:- chr12:45609770-45876063:+ chr12:45624030:- chr12:49004267,chr12:49004271 chr12:45232892,chr12:45232893 NA NA chr12:49398050,chr12:49398054 chr12:45626675,chr12:45626676 NA NA sense antisense unknown 3'UTR/splice-site intron deletion/5'-5' high none none CBS(26%),SET(100%)| 1 5 2 336 27 ENST00000683988.1 unknown upstream downstream duplicates(1) GTAAGAAGCAAAGTTTTGTGG___GCATGCTGACCATCACTGATTTCATCAATATCCTGCACCGCTACTATAAATCAGCCTTG___GTACAGATCTATGAGCTAGAAGAACACAAGATAGAAACTTGGAGAG___AGGTGTATCTCCAGGACTCCTTTAAACCGCTTGTCTGCATTTCTCCTAATGCCAG|ATTTAACAAAAACTTACTGATTGCCTACTACGCATCAGGCACTATGCTGCTCACTGAAGTGAAAGTTTTCCTCAAGATACTCCCAGTTTAATGGAAAAGACAAAAAGTGACAATGAGCTGTATAAGTGGAAGGAACAGCCTTGGGGGAAAGGCGAAATCTCTAATAAAAAACAAAAGAGGTAAGACTGGGTTAAGACTTAGGTAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1193 TOGARAM1::KLHL28 ENSG00000198718.13::ENSG00000179454.14 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOGARAM1 ENSG00000198718.13 protein_coding + + chr14:44962190-45074431:+ chr14:45054549:+ chr14:45431393-45543634:+ chr14:45523752:+ KLHL28 ENSG00000179454.14 protein_coding - + chr14:44924324-45042322:- chr14:44926283:+ chr14:45393527-45511525:- chr14:45395486:+ chr14:45057180 chr14:44924473 NA NA chr14:45526383 chr14:45393676 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR duplication/5'-5' high none none none 0 1 3 80 42 ENST00000361462.7 unknown downstream upstream duplicates(1) CTCTGTTAGAAACTTACAGCAAAAG___GGTTTGGGGGAGATACCATTAGATACTCCTTCAGCAAAAGGAAGACGATCTCATACTGGCAGTGTTGGAAATACAAGATCATCATCTGTTTCTAGAGATGCTTTCAATTCAGCTGAAAG|ATTTTCATAgTTTGTTCACTGGTGTATGGCTCCTACT...TAATTTGATAGTGGAGATGATACATGAGTAAAATATTGTTAAAATACAATGTATAGAATAGATGTGTTTATAATTAAAATCTTTTTTTTTTTTTGAGGTGG SVRNLQQKGLGEIPLDTPSAKGRRSHTGSVGNTRSSSVSRDAFNSAEr|fs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1198 STK24::FARP1 ENSG00000102572.15::ENSG00000152767.17 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98519243:- chr13:99097439-99230194:- chr13:99171497:- FARP1 ENSG00000152767.17 protein_coding + - chr13:98142562-98455176:+ chr13:98196570:- chr13:98794816-99107430:+ chr13:98848824:- chr13:98507381,chr13:98507384,chr13:98507388 chr13:98211067,chr13:98211070,chr13:98211071 NA NA chr13:99159635,chr13:99159638,chr13:99159642 chr13:98863321,chr13:98863324,chr13:98863325 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 5 2 5 37 57 ENST00000539966.6 unknown upstream downstream mismatches(1) CTTTTTACAAAACTAGAGAAAATTGGGAAGGGCTCCTTTGGAGAGGTGTTCAAAGGCATTGACAATCGGACTCAGAAAGTGGTTGCCATAAAGATCATTGATCTGGAAGAAGCTGAAGATGAGATAGAGGACATTCAACAAGAAATCACAGTGCTGAGTCAGTGTGACAGTCCATATGTAACCAAATATTATGGATCCTATCTGAAG|GTTTCTCATTCATGGAATGTGAAAACACA___CTGAGGATGCCTTGGTGTCTAGGAAGAGAGACCCACACAACTTCTCCC...AGCCAGTGTTTTG...___AACTGGGAGGGCCCACGCCCCACGTGCAGCGACGCAAGGGCGACGCAAG LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK|vshswnvkth* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1204 RNF130::RASGEF1C ENSG00000113269.14::ENSG00000146090.16 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF130 ENSG00000113269.14 protein_coding - - chr5:179911651-180072113:- chr5:180040453:- chr5:179338651-179499113:- chr5:179467453:- RASGEF1C ENSG00000146090.16 protein_coding - - chr5:180100795-180209211:- chr5:180128610:- chr5:179527795-179636211:- chr5:179555610:- chr5:180039539 chr5:180135409 NA NA chr5:179466539 chr5:179562409 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PA_domain(78%)|RasGEF_domain(100%) PA(0%)|RasGEF(100%) 1 3 0 546 11 ENST00000522208.6 ENST00000361132.9 upstream downstream none CACAAACCCGGTTCTTTGTCCCTCCTAATATCAAACAGTGGATTGCCTTGCTGCAGAGGGGAAACTGCACGTTTAAAGAGAAAATATCACGGGCCGCTTTCCACAATGCAGTTGCTGTAGTCATCTACAATAATAAATCCAAAGAGGAGCCAGTTACCATGACTCATCCAG|GCATACCGGAAGAGGATGCATCAGCTCCTACAGGCTCTGCACCAGAAGCTGGCGGCTCTGCGCCAGGGGCCA...TGGTGGGTGCCGACAAGCCCATCTCCTACAGGACCAAGCCACCAGCCTCCATCCACAGGGAGCTCCTTGGTGTCTGCAGCGACCCCTACACACTGGCCCAGCAGCTGACCCACGTGGAACTG___GAGCGGCTGCGGCACATCGGGCCTGAGGAGTTTGTCCAGGCCTTTGTGAACAAGGACCCTCTGG QTRFFVPPNIKQWIALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHP|gipeedasaptgsapeaggsapga NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 179498456 FALSE 179538580 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1221 RECQL::FGF23 ENSG00000004700.16::ENSG00000118972.3 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 110 FALSE NA FALSE NA RECQL ENSG00000004700.16 protein_coding - - chr12:21468910-21501669:- chr12:21499555:- chr12:21621844-21654603:- chr12:21652489:- FGF23 ENSG00000118972.3 protein_coding - - chr12:4368227-4379712:- chr12:4372697:- chr12:4477393-4488878:- chr12:4481863:- chr12:21486171,chr12:21486134,chr12:21486121,chr12:21486118,chr12:21486117,chr12:21486155,chr12:21486109,chr12:21486167,chr12:21486158,chr12:21486156,chr12:21486151,chr12:21486146,chr12:21486140,chr12:21486136 chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373764,chr12:4373783 NA NA chr12:21639105,chr12:21639068,chr12:21639055,chr12:21639052,chr12:21639051,chr12:21639089,chr12:21639043,chr12:21639101,chr12:21639092,chr12:21639090,chr12:21639085,chr12:21639080,chr12:21639074,chr12:21639070 chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482930,chr12:4482949 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Fibroblast_growth_factor(68%) |FGF(22%) 71 34 82 436 97 ENST00000421138.6 ENST00000237837.2 upstream downstream duplicates(26),mismatches(3) CGAGAGTCGGAGATCGGAGAGTCGGACACAGGACAGTCGGACACCGGACAGTCAAACACCGGAGAGTTAGACtGGGCTTCTCGG...CCGGTCTTCTGATCTCCCCATTCTTTTCCATGCAGGAGGATTGGCCACCAAAGCCTGTTTATTAGCAGCTGCCATTTGTTG___AAAGAAATTTGGATTATTTTAGAAACAAATTTGGAAAGAAAAAGAATGGCGTCCGTTTCAG|GTGCCCTGATGATCAGATCAGAGGATGCTGGCTTTGTGGTGATTACAGGTGTGATGAGCAGAAGATACCTCTGCATGGATTTCAGAGGCAACATTTTTGGATCA___CACTATTTCGACCCGGAGAACTGCAGGTTCCAACACCAGACGCTGGAAAACGGGTACGACGTCTACCACTCTCC MASVS|gALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGSHYFDPENCRFQHQTLENGYDVYHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1222 CEP95::SMURF2 ENSG00000258890.8::ENSG00000108854.16 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 111 FALSE NA FALSE NA CEP95 ENSG00000258890.8 protein_coding + + chr17:64506865-64542461:+ chr17:64514358:+ chr17:62502983-62538579:+ chr17:62510476:+ SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64586170:- chr17:62538400-62658425:- chr17:62582288:- chr17:64514829,chr17:64514824 chr17:64586591,chr17:64586596 NA NA chr17:62510947,chr17:62510942 chr17:62582709,chr17:62582714 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF5745)(100%)|HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) DUF5745(100%)|HECT(100%),WW(100%) 10 2 10 118 185 ENST00000556440.7 ENST00000262435.14 downstream downstream duplicates(2) TTGCCAATAACCTTCTTTTTAAGTGTCATATACATCTGAGAATACATGAACTTCAAGACTGTGATGCTAATGTTTTTATTGCTCTTTATCAGTCTATTTTGGGAGAAAAGGTACCAG___ACCTCATAGTTATTCCTAGGAGTCAAGAAGATGATGCACACAATGTACAAGCAGTAATTGATTCACTGGCCTTGGACTACTTGCAGGTCAGCTTGTCTCACATAACAG___GAGAAAATATAGTGAAAGGAGATAAAGAATCTATTAAGAATCTCCTGGAAATATTTGATGGTTTGTTGGAGTATCTTACAGAACGCATCAGTGAAACATCTCATGAGAAAA|TAAGTCTTCAGTCCAGAGACCGAATAGGCACAGGAGGACAAGTTGTGGACTGCAGTCGTTTATTTGATAACGATTTACCAGACGGGTAAGCTAACATCACTGAAATCATTAGAGAAATATATAGATAATATCCTTAAAAGAATAGAAATAAGTGGGTGTTTATTGTATATTAAATGGTGTTTATCGTATATTGAATGTAGATTTTCCTTCTAATTGTAAAATTAATGGAAGATCTTGT ANNLLFKCHIHLRIHELQDCDANVFIALYQSILGEKVPDLIVIPRSQEDDAHNVQAVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTERISETSHEK|iSLQSRDRIGTGGQVVDCSRLFDNDLPDg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1223 TASOR2::NET1 ENSG00000108021.22::ENSG00000173848.19 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 112 TRUE 196 TRUE 76 TASOR2 ENSG00000108021.22 protein_coding + + chr10:5684731-5763779:+ chr10:5750027:+ chr10:5726694-5805742:+ chr10:5791990:+ NET1 ENSG00000173848.19 protein_coding + + chr10:5412557-5459056:+ chr10:5451830:+ chr10:5454520-5501019:+ chr10:5493793:+ chr10:5755426,chr10:5755424 chr10:5443511,chr10:5443506 NA NA chr10:5797389,chr10:5797387 chr10:5485474,chr10:5485469 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF3699)_(100%),Protein_of_unknown_function_(DUF3715)(100%)|PH_domain(100%),RhoGEF_domain(100%) DUF3699(100%),DUF3715(100%)|PH(100%),PH_13(100%),PH_5(100%),RhoGEF(38%) 6 4 9 214 210 ENST00000695832.1 ENST00000355029.9 downstream upstream duplicates(3),mismatches(2) TGCTGAATTCAACAAGGTGATGAAGAATAGCAACCAATTCATTTTCCAAGACAAAGAGCTAAATGATGTTTCTGGAGAAGCCACTGCTCAAGAGATGTATCTGCCTTTCCCAGGACGGTCAGCCTCCTATGAAGACATAATCATAGACGTGTGCACCAATTTGCACGTCAAACTAAGAAGTGTTGTGAAAGAGGCTTGTAAAAGTACCTTCCTGTTCTACCTTGTCGAAACAGAAGACAAATCATTCTTTGTAAGAACAAAG|GAGCCAAGCAATAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAAATTTAATCTCTCCTGTAAGAAATGGAGCTGTCAGACGTTTTGGTCAAACAATACAG___TCATTTACCCTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTTTTCTAGCAGGTCAACAGTCCCAACACCCGCCAAGAGAAGGAGCAGTGCACTGTGGTCAGAGATGCTGGACATCACCATGAAGGAGTCTCTCACCACCAGGGAGATCAGACGGCAGGAG___GCAATATATGAAATGTCCCGAGGTG AEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCTNLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTK|EPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKFSSRSTVPTPAKRRSSALWSEMLDITMKESLTTREIRRQEAIYEMSRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1224 TASOR2::NET1 ENSG00000108021.22::ENSG00000173848.19 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 196 TRUE 76 TASOR2 ENSG00000108021.22 protein_coding + + chr10:5684731-5763779:+ chr10:5735546:+ chr10:5726694-5805742:+ chr10:5777509:+ NET1 ENSG00000173848.19 protein_coding + + chr10:5412557-5459056:+ chr10:5451830:+ chr10:5454520-5501019:+ chr10:5493793:+ chr10:5755426,chr10:5755424 chr10:5443511,chr10:5443506 NA NA chr10:5797389,chr10:5797387 chr10:5485474,chr10:5485469 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Protein_of_unknown_function_(DUF3699)_(100%),Protein_of_unknown_function_(DUF3715)(21%)|PH_domain(100%),RhoGEF_domain(100%) DUF3699(100%),DUF3715(71%)|PH(100%),PH_13(100%),PH_5(100%),RhoGEF(38%) 1 0 0 133 210 ENST00000695832.1 ENST00000355029.9 downstream upstream duplicates(1) CTCCTATTTCTAAAGATGTTCCAGTGCCAACAAATGCTAAAAGGGCAAGGAAACAAGAGAAATCTCCAGTCAAAACTGTTCCAAGGGCTAAGCCACCTGTG...AACAGAAAGCAGCTACAACCTG|GAGCCAAGCAATAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAAATTTAATCTCTCCTGTAAGAAATGGAG NRKQLQP|gakq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1225 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 197 TRUE 77 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188524787:+ chr3:187871072-188608460:+ chr3:188242575:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189088696:+ chr3:188665003-189043093:+ chr3:188806485:+ chr3:188571004,chr3:188571002 chr3:189040902,chr3:189040897 NA NA chr3:188288792,chr3:188288790 chr3:188758691,chr3:188758686 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none |Inositol_phosphatase_(100%) |hSac2(100%) 1 1 9 209 2 ENST00000414139.6 unknown downstream upstream none GGAAACTTTCCTCCTCCACCACCTCTTGATGAAGAGGCTTTCAAAGTACAG___GGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCAGCCTGGACGCTGAGATTGACTCCTTGACCAGCATCTTGGCTGACCTTGAGTGCAGCTCCCCCTATAAGCCTCGGCCTCCACAG|AGAGCATTTGTGATCCATGTGTGAGAGGAGGGGAAGAGAGAAATAAAAGACTTTGAAAATCGTCTCAAGTAGTGAAAAAAGGTTTGCACTTGAATTAG GNFPPPPPLDEEAFKVQGNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPRPPQ|rafvihv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1226 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 197 TRUE 77 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188524787:+ chr3:187871072-188608460:+ chr3:188242575:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189127057:+ chr3:188665003-189043093:+ chr3:188844846:+ chr3:188571004,chr3:188571002 chr3:189040902,chr3:189040897 NA NA chr3:188288792,chr3:188288790 chr3:188758691,chr3:188758686 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Inositol_phosphatase_(100%) |hSac2(100%) 4 1 4 209 28 ENST00000414139.6 ENST00000433971.5 downstream upstream mismatches(1) CGAGCTTTCCCGGGATAAGTAGCTTTAGCGATCGGGAGACAGCCGGGCGCTGCAAG___ATT?CAACAATGTCTCACCCATCTTGGCTGC?ACCCAAAAGCAC?...GGAAACTTTCCTCCTCCACCACCTCTTGATGAAGAGGCT...___GGGAATCCCGGAGGCAAGACACTTGAGGAGAGGCGCTCCAGCCTGGACGCTGAGATTGACTCCTTGACCAGCATCTTGGCTGACCTTGAGTGCAGCTCCCCCTATAAGCCTCGGCCTCCACAG|GATTATTTATGAGGATGGCCTGTGCAAAAAGACACCCAGAGATTTCATGCTGTTGATTCACAGAAAGCCTGTTCCTCTTCACTCCGTAGAGTCCTCAGAGTCTGGATCATCCCTTACAGAAGATCCTTGATAATATTTCTGATATACCTCCAAG___GTTCCGTTTGTCAAATGTGTGCGACCCTTCTGATAAGTCACCAGAGGTGATGAGGGAGAGAGA GNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKPRPPQ|dyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1227 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 197 TRUE 77 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188524787:+ chr3:187871072-188608460:+ chr3:188242575:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189215292:+ chr3:188665003-189043093:+ chr3:188933081:+ chr3:188571004,chr3:188571002 chr3:189040902,chr3:189040897 NA NA chr3:188288792,chr3:188288790 chr3:188758691,chr3:188758686 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none |Inositol_phosphatase_(95%) |hSac2(92%) 1 0 0 209 27 ENST00000414139.6 ENST00000433971.5 downstream upstream none CCCACCTCCACCTCTAGATGATTCCAGTGCCCTTCCATCTATCTCTGGAAACTTTCCTCCTCCACCACCTCTTGATGAAGAGGCTTTCAAAGTACAG___GGGA...TGGCTGACCTTGAGTGCAGCTCCCCCTATAAGCCTCGGCCTCCACAG|CCGGGGGCCATTGAGACTGCCATGGAAGACTTGAAAGGTCACGTAGCTGAGACT ADLECSSPYKPRPPQ|PGAIETAMEDLKGHVAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1229 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 198 TRUE 78 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10620419:- chrX:10413350-10851773:- chrX:10588459:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion high none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 0 1 8 50 273 ENST00000701330.1 ENST00000380787.5 upstream downstream mismatches(1) CTTTGCTAAGGCCTAAATGAATGAAG___TGCAGGTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|ATTTCGCCGGGTTGCTTTTGTCTTGCGGGCTCCTGTCGGGTTCGGTGTTTCCGCTCTGAA...TGACCTGCCCTATTTGTCTGGAGCTCTTTGAGGACCCTCTTCTACTGCCCTGCGCACACAGCCTCTGCTTCAACTGCGCCCACCGCATCCTAGTATCACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1231 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 198 TRUE 78 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:10944205:- chrX:10865697-11129340:- chrX:10962325:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10567603:- chrX:10413350-10851773:- chrX:10535643:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion/read-through low none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 1 1 6 5 255 ENST00000669054.1 ENST00000380787.5 upstream downstream mismatches(1) CAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCA...CTGGGACCATTTAGTTGCAGAAAAACAAGCTCAGGGCGCTCACTGATTCTACATTATG|ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAAACACTGGAGTCAGAACTGACCTGCCCTATTTGTCTGGAGCTCTTTGAGGACCCTCTTCTACTGCCCTGCGCACACAGCCTCTGCTTCAACTGCGCCCACCGCATCCTAGTATCACACTGTGCCACCAACGAGTCTGTGGAGTCCATCACCGCCTTCCAGTGCCCCACCTGCCGGCATGTCATCACCCTCAGCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1232 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 198 TRUE 78 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10523187:- chrX:10413350-10851773:- chrX:10491227:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Fibronectin_type_III_domain(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%) 0 1 0 50 215 ENST00000669054.1 ENST00000380787.5 upstream downstream none CAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|CAAAACTTAGAGAGTAACCTCA...CTCATCCAAACCTGTCAACATGTTGAA___GTCAATGCATCACGTCAAGAAGCCAAATTGACAGAGGAGTGTGAaCTTCTCATTGAGATCATTCAGCAAAGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1233 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19929785:- chrX:19930978-20009179:- chrX:19947903:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20241686:- chrX:20168029-20285637:- chrX:20259804:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none THRAP3/BCLAF1_family(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(100%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 5 59 14 ENST00000379682.9 ENST00000643402.1 upstream downstream duplicates(1) GCAGAATTATACTACGCAGAGAAAAGACATAATTACTCACAAACCATTTGAGGTTGAGGGAAACCACCGAAACACAAGAGTAAGACCTTTTAAG___AGCAACTTTAGAGGTGGCAGATGCCAGCCCAATTATAAATCAGGCCTGGTACAGAAGAGCTTGTACATTCAGGCTAAGTATCAGCGTTTACGGTTCACTGGCCCAAGGGGATTTATCACTCATAAGTTCAGAGAAAGATTAATGAGAAAAAAGAAG|GATTATATCTTTATCCTTGAAATTTAAAAACATTTGCCAGGACATGTCTTGGTGTTGATGATCTCTGTTGAACCTTCTCAGTCTCCAGTCTCAG___TATAATGAGTATGATGAATATCACTGTACATAAG qNYTTQRKDIITHKPFEVEGNHRNTRVRPFKSNFRGGRCQPNYKSGLVQKSLYIQAKYQRLRFTGPRGFITHKFRERLMRKKK|dyifilei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1234 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19929786:- chrX:19930978-20009179:- chrX:19947904:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20234816:- chrX:20168029-20285637:- chrX:20252934:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none THRAP3/BCLAF1_family(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(100%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 4 59 220 ENST00000379682.9 ENST00000379565.9 upstream downstream duplicates(1) GCAGAATTATACTACGCAGAGAAAAGACATAATTACTCACAAACCATTTGAGGTTGAGGGAAACCACCGAAACACAAGAGTAAGACCTTTTAAG___AGCAACTTTAGAGGTGGCAGATGCCAGCCCAATTATAAATCAGGCCTGGTACAGAAGAGCTTGTACATTCAGGCTAAGTATCAGCGTTTACGGTTCACTGGCCCAAGGGGATTTATCACTCATAAGTTCAGAGAAAGATTAATGAGAAAAAAagA|AGAATGGACAGCAAATTATGGATGAACCTATGGGAGAGGAGGAGATTAACCCACAAACT___GAAGAAGTCAGTATCAAAGAAATTGCAATCACACATCATGTAAAGGAAGGACATGAAAA qNYTTQRKDIITHKPFEVEGNHRNTRVRPFKSNFRGGRCQPNYKSGLVQKSLYIQAKYQRLRFTGPRGFITHKFRERLMRKKe|ewtanyg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1235 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19935809:- chrX:19930978-20009179:- chrX:19953927:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20241686:- chrX:20168029-20285637:- chrX:20259804:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none THRAP3/BCLAF1_family(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(100%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 1 62 14 ENST00000379682.9 ENST00000644368.1 upstream downstream duplicates(1) CGAAACACAAGAGTAAGACCTTTTAAG|GATTATATCTTTATCCTTGAAATTTAAAAACATTTGCCAGGACATGTCTTGGTGTTGATGATCTCTGTTGAAC...TGAACCTATGGGAGAGGAGGAGATTAACCCACAAACT___GAAGAAGTCAGTATCAAAGAAATTGCAATCACACATCATGTAAAGGAAGGACATGAAAAGGCAG RNTRVRPFK|dyifilei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1236 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19950753:- chrX:19930978-20009179:- chrX:19968871:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20234814:- chrX:20168029-20285637:- chrX:20252932:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none THRAP3/BCLAF1_family(90%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(56%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 1 70 220 ENST00000379682.9 ENST00000379565.9 upstream downstream none TTTTCACATAGCTAGTGCTGCAGAGAG|AATGGACAGCAAATTATGGATGAACCTATGGGAGAGGAGGAGATTAACCCACAAACT___GAAGAAGTCAGTATCAAAGAAATTGCAATCACACATCATGTAAAGGAAGGACATGAAAAGGCAGATCCTTCCCAGTTTGAACTTTTAAAAGTATTAGGGCAGGGATCATTTGGAA FHIASAAEr|mdsklwmnlwerrrlthklkksvskklqshim* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1237 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19965044:- chrX:19930978-20009179:- chrX:19983162:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20234814:- chrX:20168029-20285637:- chrX:20252932:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none THRAP3/BCLAF1_family(65%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(15%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 0 1 69 220 ENST00000379682.9 ENST00000379565.9 upstream downstream mismappers(1) GAAAAAATAAAGAAAGAAGGGGATTGTAGAAAAGAGAGCAATTCTTCCAGTAACCAACTTGATAAAAGTCAAAAACTTCCTGATGTGAAACCCTCGCCTATCAATCTTAGGAAGAAATCACTTACAGTTAAAGTAGATGTGAAGAAAACAGTAGATACATTCAG|AATGGACAGCAAATTATGGATGAACCTATGGGAGAGGAGGAGATTAACCCACAAACT___GAAGAAGTCAGTATCAAAGAAATTGCAATCACA EKIKKEGDCRKESNSSSNQLDKSQKLPDVKPSPINLRKKSLTVKVDVKKTVDTFr|mdsklwmnlwerrrlthklkksvskklqs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1238 BCLAF3::RPS6KA3 ENSG00000173681.17::ENSG00000177189.14 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 199 TRUE 79 BCLAF3 ENSG00000173681.17 protein_coding - - chrX:19912860-19991061:- chrX:19935809:- chrX:19930978-20009179:- chrX:19953927:- RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20234814:- chrX:20168029-20285637:- chrX:20252932:- chrX:19918882,chrX:19918886 chrX:20247216,chrX:20247217 NA NA chrX:19937000,chrX:19937004 chrX:20265334,chrX:20265335 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none THRAP3/BCLAF1_family(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) THRAP3_BCLAF1(100%)|Kdo(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 0 0 62 220 ENST00000379682.9 ENST00000379565.9 upstream downstream mismatches(1) CCGAAACACAAGAGTAAGACCTTTTAAG|AATGGACAGCAAATTATGGATGAACCTATGGGAGAGGAGGAGATTAACCCACAAACT___GAAGAAGTCAGTATCA...AGGGCAGGGATCATTTGGAAAG___GTTTTCTTAGTTAAAAAAATCTCAGGCTCTGATGCTAGGCAGCTTTATGCCATGAAGGacaTGAA RNTRVRPFK|NGQQIMDEPMGEEEINPQTEEVSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1243 PVT1::SNTB1 ENSG00000249859.14::ENSG00000172164.15 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120542000:- chr8:121547985-121825513:- chr8:121554240:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none |MTBP_C(100%) 1 0 2 57 195 ENST00000651587.1 ENST00000395601.7 downstream downstream none CCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGGGTGCCTTTCCCAAGACCATCA...TTAGATTTTGGAGGCAAAGATGGAGAGATT___CAACTGGACCTTCATTCCTGCCCCAAGCCAATTGTTTTCATCATTCATTCCTTCCTGTCAGCTAAGATTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1245 MYH9::FOXRED2 ENSG00000100345.23::ENSG00000100350.16 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 113 FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36341370:- chr22:36677326-36784055:- chr22:36737415:- FOXRED2 ENSG00000100350.16 protein_coding - - chr22:36487190-36507221:- chr22:36498156:- chr22:36883237-36903268:- chr22:36894203:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(11%)| Myosin_N(100%),Myosin_head(16%)| 7 4 4 4359 64 ENST00000685801.1 ENST00000684868.1 upstream downstream duplicates(3),mismatches(1) TCAGGGCTCATCTAC___ACCTATTCAGGCCTGTTCTGTGTGGTCATCAATCCTTACAAGAACCTGCCCATCTACTCTGAAGAGATTGTGGAAATGTACAAGGGCAAGAAGAGGCACGAGATGCCCCCTCACATCTATGCCATCACAGACACCGCCTACAGGAGTATGATGCAAG|TGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCACCACAGCGTCACCTGGCCCGCCACTGAGCTCCCCATCACACAGCTGACCAGCTCCATCGTGCGGCGCGTGAATGAGGCTTCTGGGCTCTACCAGATGTTCGGTGTGCTGGCCGATGTCATCCTGTTGAAGGA___...ACCTGGAGGAGTTCCCCATACAGATGCTGGCC...ACACTCACAGGGAGGAAGGCAAAGCACGGGCTCTTCGTCATCAACATGGAATATGGCAG SGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQ|vRAVHRLLEHRHHSVTWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 36783852,36737415 FALSE,TRUE 36886314,36889850 FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1265 TMTC2::NAP1L1 ENSG00000179104.9::ENSG00000187109.15 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMTC2 ENSG00000179104.9 protein_coding + + chr12:82686880-83134870:+ chr12:82687669:+ chr12:83080659-83528649:+ chr12:83081448:+ NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76060279:- chr12:76430365-76478515:- chr12:76454059:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Nucleosome_assembly_protein_(NAP)(100%) |ING(36%),NAP(100%) 1 0 1 472 5548 ENST00000321196.8 ENST00000618691.5 downstream downstream none TGGGAGGAGAAGGCGGCGGAAGGTGGAGATTGATGCTTCTGTTTTTTGTTGCCGCTGCTGCCCTCGCGCTGGGAGCCGAGCCGGAGGGAAGGCGGTGGAGAGATGATTGCAGAGTTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGTGCGGATTTCTGCTATGATGACAG|CCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGCTGTTCTCTATCAG MIAELVSSALGLALYLNTLSADFCYDDs|LPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1268 VPS35L::EPHB1 ENSG00000103544.17::ENSG00000154928.19 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS35L ENSG00000103544.17 protein_coding + + chr16:19555240-19706793:+ chr16:19691471:+ chr16:19566562-19718115:+ chr16:19702793:+ EPHB1 ENSG00000154928.19 protein_coding + + chr3:134795260-135260467:+ chr3:135154152:+ chr3:134514102-134979309:+ chr3:134872994:+ chr16:19699546,chr16:19699546 chr3:135137361,chr3:135137358 NA NA chr16:19710868,chr16:19710868 chr3:134856203,chr3:134856200 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |Ephrin_type-A_receptor_2_transmembrane_domain(100%),Fibronectin_type_III_domain(46%),Protein_kinase_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) |EphA2_TM(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SAM_1(100%),SAM_2(100%),fn3(95%) 0 1 0 339 2 ENST00000251143.9 ENST00000398015.8 downstream upstream none CTCAGATCCTAGAGCATCTGAAAACCCTGGCCAAGGACGAG|CCCCCTCCACCGTTCCCATCATGCACCAAGTCAGTGCCACTATGAGGAGCATCACCTTGT...GGAGCAGCCCAATGGCATCATCCTGGACTATGAGATCCGGTACTATGAGAAG___GAACACAATGAGTTCAACTCCTCCATGGCCAGGAGTCAGACCAACACAG QILEHLKTLAKDE|ppppfpsctksvpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ephrin type-B receptor 1 TK Eph P54762 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1276 MBNL1::ENSG00000242536 ENSG00000152601.18::ENSG00000242536.2 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 116 TRUE 205 TRUE 80 MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152269092:+ chr3:151961617-152183569:+ chr3:151986881:+ ENSG00000242536 ENSG00000242536.2 lncRNA - - chr3:157814822-158088997:- chr3:157895838:- chr3:157532611-157806786:- chr3:157613627:- chr3:152294003,chr3:152294005 chr3:157909604,chr3:157909604 NA NA chr3:152011792,chr3:152011794 chr3:157627393,chr3:157627393 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 75 123 162 564 642 ENST00000282486.10 ENST00000651134.1 downstream downstream duplicates(126),low_entropy(1),mismappers(2),mismatches(27) TTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTTTCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGAAAAAAAAATGTGAGAG|GGGATGAGAGCCTGGAAACTACTTTCCTCAGAATCATCGTTAGAGTTCATCAATGGAGGTATGAAATTTGGAAGGCAGAAGAAATGCAGAAACCACCACTGCACCTGTGACAGAAGTAG___GGTCTCATTCTGTCACCCAGGCTAGAGTGCAGTGGCCCAATCATAGCTCACTGCAGCCTCAAACTCCTAAGTTCAAGAGAGCTTCCCACCTCAGCCTCCTGATTTATAGGACTACAG...___GAAGATCTTTAATTGAAGATTCATTCTACCCTCAGAAAACTAACAGAAGATATTGAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1277 MBNL1::ENSG00000242536 ENSG00000152601.18::ENSG00000242536.2 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 205 TRUE 80 MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152269092:+ chr3:151961617-152183569:+ chr3:151986881:+ ENSG00000242536 ENSG00000242536.2 lncRNA - - chr3:157814822-158088997:- chr3:157855722:- chr3:157532611-157806786:- chr3:157573511:- chr3:152294003,chr3:152294005 chr3:157909604,chr3:157909604 NA NA chr3:152011792,chr3:152011794 chr3:157627393,chr3:157627393 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 0 19 564 58 ENST00000282486.10 ENST00000651134.1 downstream downstream duplicates(5),mismatches(3) GCACAGCGACATGCAACAGTCTTTTCACTGCAGCTGAATGAGTTGTGGCGCCCACAATGCTCCCATGACAAGGAGCTGACAAGTTCCATTTTCCGTCGCGGGCATCTTGGAATCATGACTCCCACAATGCCTTGGGCACTTGGTCGACAGTGGGGCCGCCTCTGAAAAAAAAATGTGAGAG|GTCTTCTGCTACATGCCCTGAAGCAGCACCTATTAAGGTTTGATTAGAAAAAGGGTGGCCTTGGGTGCCTGGGAGCTTCTGCAGGAGTG___GGTCTCATTCTGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1278 MBNL1::ENSG00000242536 ENSG00000152601.18::ENSG00000242536.2 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 205 TRUE 80 MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152269407:+ chr3:151961617-152183569:+ chr3:151987196:+ ENSG00000242536 ENSG00000242536.2 lncRNA - - chr3:157814822-158088997:- chr3:157895838:- chr3:157532611-157806786:- chr3:157613627:- chr3:152294003,chr3:152294005 chr3:157909604,chr3:157909604 NA NA chr3:152011792,chr3:152011794 chr3:157627393,chr3:157627393 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 5 163 13 642 ENST00000459747.1 ENST00000651134.1 downstream downstream duplicates(64),mismatches(14) GTGAGCCGCAGCCGCTCCTGCGCCCTTCCCTGCCGCGGGCTCTGCGGACGCTGTCACGGCACAGCCCGCGCACGGCTTGGCAGCCCAGCGGGACCCAGGGAGAAACAGGGGGGCGAGAAGAGAAACAG|GGGATGAGAGCCTGGAAACTACTTTCCTCAGAATCATCGTTAGAGTTCATCAATGGAGGTATGAAATTTGGAAGGCAGAAGAAATGCAGAAACCACCACTGCACCTGTGACAGAAGTAG___GGTCTCATTCTGTCACCCAGGCTAGAGTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1279 MBNL1::ENSG00000242536 ENSG00000152601.18::ENSG00000242536.2 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 205 TRUE 80 MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152269778:+ chr3:151961617-152183569:+ chr3:151987567:+ ENSG00000242536 ENSG00000242536.2 lncRNA - - chr3:157814822-158088997:- chr3:157895838:- chr3:157532611-157806786:- chr3:157613627:- chr3:152294003,chr3:152294005 chr3:157909604,chr3:157909604 NA NA chr3:152011792,chr3:152011794 chr3:157627393,chr3:157627393 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 1 165 9 642 ENST00000460591.5 ENST00000651134.1 downstream downstream duplicates(64),mismatches(15) GCCAGTTTGCCTTTTGCCAAGTTTACAGGGCGGAAGACGCCCTGTAGGAGAGGGCTGCCTCCTCCTTTTCTTCTTCTTCTTTTTTTTTTCATCGTTTTGTAGTGCGTCACTCAAAAACTGTAAGAAAA|GGGATGAGAGCCTGGAAACTACTTTCCTCAGAATCATCGTTAGAGTTCATCAATGGAGGTATGAAATTTGGAAGGCAGAAGAAATGCAGAAACCACCACTGCACCTGTGACAGAAGTAG___GGTCTCATTCTGTCACCCAGGCTAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1301 PALS1::GPHN ENSG00000072415.10::ENSG00000171723.16 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67241533:+ chr14:67707430-67802778:+ chr14:67708250:+ GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:67088983:+ chr14:66974125-67648520:+ chr14:67555700:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |MoeA_C-terminal_region_(domain_IV)(100%),MoeA_N-terminal_region_(domain_I_and_II)(85%),Probable_molybdopterin_binding_domain(47%) |MoCF_biosynth(7%),MoeA_C(100%),MoeA_N(44%) 0 2 0 60 69 ENST00000261681.9 ENST00000315266.9 downstream upstream mismatches(1) CGCTTCTGCAGTGCGTAGGAGCGGCCGGGGCGGGAGGCTCCGCGGAGCCGAGGCGTGGAG|ATGGAATGGGGCGAG?CCTTGCTC?AGATGTATATGCAAAAGACAATTTACCCCCCTTCCCAGCATCAGTAAAAGATGGCTATGCTGTCCGAG___CTGCTGATGGCCCAGGAGATCGTTTCATCATTGGGGAATCCCAAGCTGGTGAACA...GACAGTAATGCCAGGACAAGTCATGCGGGTTACAACAGGTGCTCCAATACCCTGCGGTGCTcATGCAGTAGTACAAGTGGAAGATACCGAACTTATCAGGGAATCAGATGAT___GGCACTGAAGAACTTGAAGTGCGAATTCTGGTGCAAGCTCGGCCAGGCCAAGATATCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation 1305 PRMT1::CPM ENSG00000126457.22::ENSG00000135678.12 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRMT1 ENSG00000126457.22 protein_coding + + chr19:49675786-49689029:+ chr19:49682259:+ chr19:50179043-50192286:+ chr19:50185516:+ CPM ENSG00000135678.12 protein_coding - + chr12:68842197-68971570:- chr12:68875508:+ chr12:69235977-69365350:- chr12:69269288:+ chr19:49682584,chr19:49682809,chr19:49682584 chr12:68872231,chr12:68872285,chr12:68872228 NA NA chr19:50185841,chr19:50186066,chr19:50185841 chr12:69266011,chr12:69266065,chr12:69266008 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Methyltransferase_domain(31%),Ribosomal_protein_L11_methyltransferase_(PrmA)(77%)| MTS(14%),Met_10(13%),Methyltransf_11(9%),Methyltransf_25(9%),PrmA(14%)| 299 271 290 13209 1985 ENST00000610806.4 unknown downstream upstream duplicates(250),low_entropy(3),mismappers(39),mismatches(111),multimappers(1) AGGAGGAGTAGGTGCGGGTGAAGATGGCGGCAGCCGAGGCCGCGAACTGCATCATGGAG___GTGTCCTGTGGCCAGGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAG___GAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGG___ATCGAGTGTTCCAGTATCTCTGATTATGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCACG|AAAAATCTGATCATCAAGCTGGGCGCGGTGGCTCATTCCTATAATCCCAGCACTTTGGAAGGCTGAGGCAGGCAGATCGCCTGAGGTcGGGAGTTCGAGACGAGCCTGGCCAGCATGGTGAAACCCTGTCTCTACTAAAAACATAAAAATTAGCCAGGTGTAGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGTTGGAGGTTGCAGTGAGCCGA MAAAEAANCIMEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH|eksdhqagrggsfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5088 chr19:49682117-49682195:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1306 EIF3CL::NMRAL1 ENSG00000205609.13::ENSG00000153406.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 209 TRUE 81 EIF3CL ENSG00000205609.13 protein_coding - - chr16:28379579-28403841:- chr16:28399871:- chr16:28390900-28415162:- chr16:28411192:- NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4481879:- chr16:4511692-4545764:- chr16:4531880:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(33%)|NmrA-like_family(100%) eIF-3c_N(17%)|NAD_binding_10(100%),NmrA(100%),TrkA_N(100%) 102 69 138 3877 454 ENST00000398944.7 ENST00000572559.1 upstream downstream duplicates(129),mismatches(72) GGATTCAGAAG___GCTCTTCAGATGAGGATGAGGATGAGGACGGAGTCAGTGCTGCAACTTTCTTGAAGAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGCAAGTTCCTCAAAAAGATGGAT___GATGAAGATGAGGACTCAGAAGATTCCGAAGATGATGAAGACTGGGACACAGGTTCCACATCTTCCGATTCCGACTCAGAGGAGGAAGAAGGGAAACAAACCGCGCTGGCCTCAAGATTTCTTAAAAA|ACTGCCACAGAGATAGTTCAAGGTGACAATGGCTCCTCTGCAGCAGCACATAGCAGTCTTGCCAGACACAACAGCAGATCAAGTAACTACTGAAGATGATGGCTACACTTGGACAGGTGACATTACATTATCATCAACAAACATTTATCACCCTCTTGAGTACTGTGACTACAAAGAAAGATAAGATCTTGCTCTGCACGTCAAGTACCTTTCAATCTAGAGAGAGAGTTAGG DSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKk|lpqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1307 EIF3CL::NMRAL1 ENSG00000205609.13::ENSG00000153406.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 209 TRUE 81 EIF3CL ENSG00000205609.13 protein_coding - - chr16:28379579-28403841:- chr16:28399871:- chr16:28390900-28415162:- chr16:28411192:- NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4474792:- chr16:4511692-4545764:- chr16:4524793:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion medium none Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(33%)|NmrA-like_family(100%) eIF-3c_N(17%)|NAD_binding_10(100%),NmrA(100%),TrkA_N(100%) 1 1 3 3877 41 ENST00000398944.7 ENST00000571291.5 upstream downstream duplicates(3),mismatches(2) GTCGCAAGTTCCTCAAAAAGATGGAT___GATGAAGATGAGGACTCAGAAGATTCCGAAGATGATGAAGACTGGGACACAGGTTCCACATCTTCCGATTCCGACTCAGAGGAGGAAGAAGGGAAACAAACCGCGCTGGCCTCAAGATTTCTTAAAAA|TCATCACCCGTAGCATCCGGTTAAGAGGCTCTCCACCTCGCTCATTTTGGTCTAACTGGATTTACACAAACTCACTGTGCACGTGCCTGGGGCGGGCAAACCCGGAAACGACGCCGAGTCCCGCGGGATCCAGGAGGAGCCAACTGCGCCGGAGGAGGGGTTTCGGCCGACACGTCGGGATTGGCGGCTGCAGCCAGGGGTCCTCCGACGCTGGGCTTCCGTGAGCGGCGCTCTGCCAG___ATCTCTGG RKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKn|hhp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1309 POMK::HOOK3 ENSG00000185900.11::ENSG00000168172.9 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 117 FALSE NA FALSE NA POMK ENSG00000185900.11 protein_coding + + chr8:43093498-43131180:+ chr8:43097615:+ chr8:42948641-42986323:+ chr8:42952758:+ HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43013051:+ chr8:42752089-42885678:+ chr8:42868194:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |HOOK_protein_coiled-coil_region(18%) |HOOK(9%) 32 22 41 541 358 ENST00000676193.1 ENST00000307602.9 downstream upstream duplicates(24),mismatches(4) CCGGGGTGGCAGGAGCCGCAGAGGCTTGGGCTGCAG___AAAAAGGATCCTGTTTGCTGTGTAATCCTGAGAATGGACTGCAAGAGAGGAAAAACTGGGCGTCTGCTTGGGAATCTATTGTGGAAACCCAG|GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATCAGCTCCAGGAACGAGACCGACTGTTCCACTCATTAGAG___AAAGAATATGAGAAAACAAAGAGTCAGAGAGAGATGGAAGAGAAATATATTGTTAGTGCCTGGTACAATATG___GGAATGACCCTGCATAAAAAGGCAGCTGAAGATAGACTGGCAAGCACAGGCTCAGGGCAGTCATTTCTGGCGAGGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase-like protein SgK196 Other Other-Unique Q9H5K3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 1310 ENSG00000280893::CDH1 ENSG00000280893.1::ENSG00000039068.20 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000280893 ENSG00000280893.1 protein_coding + + chr16:29812261-29820092:+ chr16:29817292:+ chr16:29823582-29831413:+ chr16:29828613:+ CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68801670:+ chr16:68771195-68869440:+ chr16:68835573:+ chr16:29818030 chr16:68801612 NA NA chr16:29829351 chr16:68835515 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion high none |Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%),Cadherin_prodomain_like(68%) CD225(100%),PAXIP1_C(17%)|Cadherin(100%),Cadherin_C(100%),Cadherin_pro(0%) 28 40 26 393 108 ENST00000609618.2 ENST00000261769.10 downstream upstream duplicates(30),low_entropy(3),mismatches(5) GGATGGGCAGCCCTGGATGCCCCCGCCCTCCGAAATCCAGCGGCTCTATGAACTGCTGGCTGCCCACGGTACTCTGGAGCTGCAAGCCGAGATCCTGCCCCGCCGGCCTCCCACGCCGGAGGCCCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAAA___ACCACACATGCCCACGGAATTTGATTTTGATGATGAGCCAGTGACACCAAAGGACTCCCTGATTGACCGGAGACGCACCCCAG|TGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAG___GCCTCCGTTTCTGGAATCCAAGCAGAATTGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site 1311 PAGR1::CDH1 ENSG00000280789.2::ENSG00000039068.20 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 118 FALSE NA FALSE NA PAGR1 ENSG00000280789.2 protein_coding + + chr16:29816152-29822489:+ chr16:29817292:+ chr16:29827473-29833810:+ chr16:29828613:+ CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68801670:+ chr16:68771195-68869440:+ chr16:68835573:+ chr16:29818030 chr16:68801612 NA NA chr16:29829351 chr16:68835515 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none PAXIP1-associated-protein-1_C_term_PTIP_binding_protein(77%)|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%),Cadherin_prodomain_like(68%) PAXIP1_C(17%)|Cadherin(100%),Cadherin_C(100%),Cadherin_pro(0%) 28 40 26 393 108 ENST00000320330.8 ENST00000261769.10 downstream upstream duplicates(30),low_entropy(3),mismatches(5) GGATGGGCAGCCCTGGATGCCCCCGCCCTCCGAAATCCAGCGGCTCTATGAACTGCTGGCTGCCCACGGTACTCTGGAGCTGCAAGCCGAGATCCTGCCCCGCCGGCCTCCCACGCCGGAGGCCCAGAGCGAAGAGGAGAGATCCGATGAGGAGCCGGAGGCCAAAGAAGAGGAAGAGGAAAA___ACCACACATGCCCACGGAATTTGATTTTGATGATGAGCCAGTGACACCAAAGGACTCCCTGATTGACCGGAGACGCACCCCAG|TGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAG___GCCTCCGTTTCTGGAATCCAAGCAGAATTGCTC DGQPWMPPPSEIQRLYELLAAHGTLELQAEILPRRPPTPEAQSEEERSDEEPEAKEEEEEKPHMPTEFDFDDEPVTPKDSLIDRRRTP|vNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQASVSGIQAEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site 1313 ENSG00000288632::OTOA ENSG00000288632.1::ENSG00000155719.18 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288632 ENSG00000288632.1 lncRNA - - chr16:29442917-29613717:- chr16:29613103:- chr16:29454238-29625038:- chr16:29624424:- OTOA ENSG00000155719.18 protein_coding + - chr16:21663968-21761935:+ chr16:21706349:- chr16:21675289-21773256:+ chr16:21717670:- chr16:29600637,chr16:29600643 chr16:21717407,chr16:21717407 NA NA chr16:29611958,chr16:29611964 chr16:21728728,chr16:21728728 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 11 35 29 145 109 ENST00000675579.1 unknown upstream downstream duplicates(33),low_entropy(3),mismappers(1),mismatches(39) GCCGGGGCTGGCGCTGGTGATGTGGGCCGCGTGCGGCGTCTTCTCCATCGTGGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCGTCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCAGCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCATGGCCTGCCACTGCGTGC|GTGTGCTCACCAGAGCAGCGGTTCCAGAATCACCTGGAAGCTTGTTGGAAGTGCAGCGTCAGCTGGGCGCAATGGCTCACACCTGTAATCCAAACACTTTGGGAGGCCAAGGGAAGAAGGAGGAAGAAGAGGAAGATGGGAGTCCTGGGCCTCAACCAAGAGCTCCTGAATCAGAATCTGCATTTAAGATCCCCAG___GCTAAGCTAGGCTGTTCTCCCCATTTCTCTGGCTAGTGACACTGAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1314 EIF3CL::HMOX2 ENSG00000205609.13::ENSG00000103415.12 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3CL ENSG00000205609.13 protein_coding - - chr16:28379579-28403841:- chr16:28399871:- chr16:28390900-28415162:- chr16:28411192:- HMOX2 ENSG00000103415.12 protein_coding + - chr16:4474690-4510347:+ chr16:4478762:- chr16:4524691-4560348:+ chr16:4528763:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(33%)| eIF-3c_N(17%)| 9 17 43 3877 79 ENST00000398944.7 unknown upstream downstream duplicates(20),mismatches(5) AGGACGGAGTCAGTGCTGCAACTTTCTTGAAGAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGCAAGTTCCTCAAAAAGATGGAT___GATGAAGATGAGGACTCAGAAGATTCCGAAGATGATGAAGACTGGGACACAGGTTCCACATCTTCCGATTCCGACTCAGAGGAGGAAGAAGGGAAACAAACCGCGCTGGCCTCAAGATTTCTTAAAAA|ATGCAGTTTTGCTCCTGTTGCCCAGGCTGGAATGCAGTGGCACAATCTTGGCTCATCGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCGGCCTCCCAAGTAGCTCGGATTACAGGCACACgCCACCATGCCCAGCTAATTTTTGTATTATTATTATTTTTTTCTTAGTAGAGATGGGGTTTTTCCATGTTGGTCAGGCTGGTCTCTATCTCCCGACCTCAGGTGATCCGCCCATCTCGGCCTCCCAAAGTGCTGGGATCACAAGCATGAGCCACTGCACCGGGCC DGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKk|csfapvaqagmqwhnlgssqplpprfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1315 QPCTL::MRPL4 ENSG00000011478.13::ENSG00000105364.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 120 FALSE NA FALSE NA QPCTL ENSG00000011478.13 protein_coding + + chr19:45692403-45703989:+ chr19:45693556:+ chr19:46195661-46207247:+ chr19:46196814:+ MRPL4 ENSG00000105364.14 protein_coding + + chr19:10251901-10260055:+ chr19:10252397:+ chr19:10362577-10370731:+ chr19:10363073:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Ribosomal_protein_L4/L1_family(100%) |Ribosomal_L4(100%) 14 14 14 257 1030 ENST00000012049.10 ENST00000307422.9 downstream upstream duplicates(6),low_entropy(1),mismatches(6) GCCGCGGGCGACCCCGCCTGCGGCTGGGGGAACGTGGCCTCATGGAGCCACTCTTGCCGCCGAAGCGCCGCCTGCTACCGCGGGTTCGGCTCTTGCCTCTGTTGCTGGCGCTGGCCGTGGGCTCGGCGTTCTACACCATTTGGAGCGGCTGGCACCGCAGGACTGAGGAGCTGCCGCTGGGCCGGGAGCTGCGG___GTCCCATTGATCGGAAGCCTCCCCGAAGCCCGGCTGCGGAGGGTGGTGGGACAACTGGATCCACAGCGTCTCTGGAGCACTTATCTGCGCCCCCTGCTGGTTGTGCGAACCCCGGGCAGCCCGGGAAATCTCCAAGTCAGAAAG|GGCCTGAGTTCCCTGGCGGAAGAGGCAGCGCGTGCGACCGAGAACCCGGAGCAGGTGGCGAGCGAGG___GTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTACCCACTCATCGACGCCCAGTGCAGGCCTGGGTCGAGTCCTTGCGGGGCTTCGAGCAGGAGCGCGTGGGCCTGGCCGACCTGCACCCCGATGTTTTCGCCACCGCGCCCAG___GCTGGACATACTGCACCAGGTTGCTATGTGG RGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTEELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRK|GLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1318 ENSG00000285053::LINC00861 ENSG00000285053.1::ENSG00000245164.10 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285053 ENSG00000285053.1 protein_coding + + chr1:235328570-235448952:+ chr1:235335334:+ chr1:235491885-235612267:+ chr1:235498649:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126048228:- chr8:126871965-127305033:- chr8:127060472:- chr1:235337408,chr1:235337409,chr1:235337329 chr8:126049379,chr8:126049378,chr8:126049444 NA NA chr1:235500723,chr1:235500724,chr1:235500644 chr8:127061623,chr8:127061622,chr8:127061688 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none polyprenyl_synt(0%)| 11 4 22 300 39 ENST00000646528.1 unknown downstream downstream duplicates(19),mismappers(1),mismatches(6) GCGGAGAGTTCTGTGGTGAAATAGTGGGAAGGATTCATGTAGGCATCGGGAAGAGCCTAAGTCCACATTATAAAATAGGAAGTTGATGCGGGGTACAGTTACTCCCGGACCGGCGGCGTGAAAGTCGTGATATCATCGTTGAACT___ATTAGCTTTGAAGTTTAAATCCAATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAATACTTACTTCAGTTACCAG|GGTAGTAGATTGGATGTTTCTAAGTGCAGCAGCCACTTGGAAATAGCAAGAGTGAATAAAGATCAACTCTGTTAGCTTTACTTCAAGAAAGAAAATGGGAATCCACAGAAACATGAAGGACTCTCCAGATCCTGGCAAGGAGAATGCCAGCAAACAACCCTCATGATGGCATCAGGATGATAAAA___ATTGCTTTCTCATTGTTGGACATTTATGGTCATGACCCCAGCTTTTCTCTTCCTTGTGCAAGAAAGATG MEKTQETVQRILLEPYKYLLQLP|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1319 GGPS1::LINC00861 ENSG00000152904.11::ENSG00000245164.10 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GGPS1 ENSG00000152904.11 protein_coding + + chr1:235327350-235344532:+ chr1:235335334:+ chr1:235490665-235507847:+ chr1:235498649:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126048228:- chr8:126871965-127305033:- chr8:127060472:- chr1:235337408,chr1:235337409,chr1:235337329 chr8:126049379,chr8:126049378,chr8:126049444 NA NA chr1:235500723,chr1:235500724,chr1:235500644 chr8:127061623,chr8:127061622,chr8:127061688 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Polyprenyl_synthetase(5%)| none 10 4 21 300 39 ENST00000282841.9 unknown downstream downstream duplicates(19),mismatches(6) CGCATTTTCTTGCACCAACTAATGCGGTGTCGCTGGCGGCTGAGGAGGGCGGAGAGTTCTGTGGTGAAATAGTGGGAAGGATTCATGTAGGCATCGGGAAGAGCCTAAGTCCACATTATAAAATAGGAAGTTGATGCGGGGTACAGTTACTCCCGGACCGGCGGCGTGAAAGTCGTGATATCATCGTTGAACT___ATTAGCTTTGAAGTTTAAATCCAATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTATAAATACTTACTTCAGTTACCAG|GGTAGTAGATTGGATGTTTCTAAGTGCAGCAGCCACTTGGAAATAGCAAGAGTGAATAAAGATCAACTCTGTTAGCTTTACTTCAAGAAAGAAAATGGGAATCCACAGAAACATGAAGGACTCTCCAGATCCTGGCAAGGAGAATGCCAGCAAACAACCCTCATGATGGCATCAGGATGATAAAA___ATTGCTTTCTCATTGTTGGACATTTATGGTCATG MEKTQETVQRILLEPYKYLLQLP|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1320 ARMC8::SRGAP1 ENSG00000114098.18::ENSG00000196935.10 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARMC8 ENSG00000114098.18 protein_coding + + chr3:138187248-138298384:+ chr3:138188530:+ chr3:137906090-138017226:+ chr3:137907372:+ SRGAP1 ENSG00000196935.10 protein_coding + - chr12:63843761-64162217:+ chr12:63995785:- chr12:64237541-64555997:+ chr12:64389565:- chr3:138194484,chr3:138194481 chr12:64020014,chr12:64020017 NA NA chr3:137913326,chr3:137913323 chr12:64413794,chr12:64413797 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 7 23 185 20 ENST00000481646.5 unknown downstream downstream duplicates(8),mismatches(3) CCCCGCGCCGGCGCCTGCAGCAGCCGGGTGGGAAGGCTCAAGATGGCGTGCTTGTTGGAGACCCCAATCCGCATGAGCGTCCTTTCG___GACCAGGAATGAAAGTTACTGGGAGATAACTTCGAAGGATTTTGCAACAAATTCGAGCTGTCCGACTCTGAGAATG|ATTAAGCCACACAATCAGCAATACCTAAA___GGTCCAAGGTCATGGAGAGGTGTGAAATGAACGGAACTGCAAAGCCAATGGTGACAGAAAGGCATGCTTCTCCACAGCCCCTTCCAAACAGGA M|ikphnqqylkvqghgev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1322 CCDC88C::CATSPERB ENSG00000015133.20::ENSG00000133962.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 122 FALSE NA FALSE NA CCDC88C ENSG00000015133.20 protein_coding - - chr14:91271323-91417844:- chr14:91416738:- chr14:91737667-91884188:- chr14:91883082:- CATSPERB ENSG00000133962.8 protein_coding - - chr14:91580696-91780707:- chr14:91617736:- chr14:92047040-92247051:- chr14:92084080:- chr14:91413293,chr14:91413300 chr14:91621648,chr14:91621652 NA NA chr14:91879637,chr14:91879644 chr14:92087992,chr14:92087996 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none HOOK_domain(25%)|Cation_channel_sperm-associated_protein_subunit_beta_protein_family(64%) HOOK_N(1%)|CATSPERB(66%) 5 15 9 63 24 ENST00000389857.11 ENST00000256343.8 upstream downstream duplicates(6),mismatches(2) GACGTGACAGTCTCGGAGCTCCTGGAGCTCTTCCTGCAGAGCCCGCTGGTGACCTGG___GTGAAAACTTTTGGCCCGTTTGGAAGCGGCAGCCAGGACAACCTGACTATGTACATGGATTTAGTGGACGGCATCTTTTTGAACCAAATTATGCTGCAAAT|GTTTTCGAATGCTTGAAATACCACTACTGACTGTGTTTGTTGGAAACCCTAATTTGTTGGAAGTTACAGCTGAAGTcACTTTTGATGATACTGACAGTTATGTAATAACAATTTCTGCAGCTAGCAAAGTTTTACATCAG___ATAAACTACAGGCCTCCATCTAATATGGGAATTGCTATTCCACTCACAGATAATTTTTATCATGCAGATCCTAGCAAACCCATACCAAGAAACATGTTTCACATGTCAAAG___AAAACCGGTAAATTCAAACAGTGTGCTAATGTTTCCACTCGGGA DVTVSELLELFLQSPLVTWVKTFGPFGSGSQDNLTMYMDLVDGIFLNQIMLQm|fsna* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1323 SNED1::DNAH7 ENSG00000162804.15::ENSG00000118997.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 123 FALSE NA FALSE NA SNED1 ENSG00000162804.15 protein_coding + + chr2:240998618-241095568:+ chr2:240999050:+ chr2:241938035-242034983:+ chr2:241938467:+ DNAH7 ENSG00000118997.14 protein_coding - - chr2:195737703-196068837:- chr2:195756285:- chr2:196602427-196933561:- chr2:196621009:- chr2:241028510,chr2:241028511 chr2:195757224,chr2:195757223 NA NA chr2:241967927,chr2:241967928 chr2:196621948,chr2:196621947 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Dynein_heavy_chain_C-terminal_domain(69%) |Dynein_C(48%) 1 19 6 12 53 ENST00000310397.13 ENST00000312428.11 downstream downstream duplicates(10) GCCGAGCGCGGCGACGCCGTCACCCCCAAGCAGGACGACGGCGGCTCGGGGCTGCGGCCGCTCTCGGTGCCCTTCCCGTTCTTCGGTGCCGAGCACTCCGGACTCTAC|GGGCTTGCAGTCATGTCTACAGATCTTGAAGAAGTGGTTAGCAGCATTTTGAATGTCAAAATTCCAGAAATGTGGATGGGTAAATCCTACCCAAGCCTTAAACCACTTGGCAGCTATGTGAATGACTTCCTTGCAAGACTAAAATTCTTGCAG___CAATGGTATGAGGTTGGTCCTCCTCCAGTCTTCTGGCTTTCTGGCTTCTTCTTCACACAAGCCTTCCTGACCGGTGCCCAGCAGAACTACGCCAGGAAATACACAATTCCTATTGATCTTCTTGGGTTTGACTATGAAGTGATGGAAGACAAAGAATACAAGCATCCTCCTGAGGATG___GTGTTTTCATTCACGGATTATTTCTGGATGGAGCTTCCTGGAATAGAAAGATCAAGAAACTTGCAGAATCGCATCCCAAAATTCTTTATGATACAGTGCCTGTG AERGDAVTPKQDDGGSGLRPLSVPFPFFGAEHSGLY|GLAVMSTDLEEVVSSILNVKIPEMWMGKSYPSLKPLGSYVNDFLARLKFLQQWYEVGPPPVFWLSGFFFTQAFLTGAQQNYARKYTIPIDLLGFDYEVMEDKEYKHPPEDGVFIHGLFLDGASWNRKIKKLAESHPKILYDTVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1325 PRR14::ANKS3 ENSG00000156858.12::ENSG00000168096.15 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 124 TRUE 210 TRUE 82 PRR14 ENSG00000156858.12 protein_coding + + chr16:30650717-30656413:+ chr16:30653408:+ chr16:30662038-30667734:+ chr16:30664729:+ ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4705253:- chr16:4746511-4784379:- chr16:4755254:- chr16:30653766 chr16:4710608 NA NA chr16:30665087 chr16:4760609 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 1 7 9 242 128 ENST00000300835.9 ENST00000450067.6 downstream downstream duplicates(6),inconsistently_clipped(1),mismatches(2) CATCGCCAGTCCTAGACCCCCCGCTGAG___GGCTTCATTGATGAGACCCCCAACTTCATCATCCCAGCACAAAG|AAAAGTACGAAGATCTGAGCTCTTCTGACGAGTCCTGCCCTGCTCCTCAGAGACAGAGGCCTTGCCGGAAGAAGGGTGTCAGCATCCACGAGGGACCGCGAGCCCTGGCCAGGATCACAGGCATTGGCCTGGGCGGCAGAGCCCCACGGCCTCGCTATG___AGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACCTCCCCCATCAATGAGCGGGAcGTGGAGAGCAGCAGCAGCAGCAGCAGTCGGG___AGGAACATGCTTTCTGTGCCAACCTGGGGCCCGTCCAGAGCAGC IASPRPPAEGFIDETPNFIIPAQr|kvrrself* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1326 PRR14::ANKS3 ENSG00000156858.12::ENSG00000168096.15 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 210 TRUE 82 PRR14 ENSG00000156858.12 protein_coding + + chr16:30650717-30656413:+ chr16:30653103:+ chr16:30662038-30667734:+ chr16:30664424:+ ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4705253:- chr16:4746511-4784379:- chr16:4755254:- chr16:30653766 chr16:4710608 NA NA chr16:30665087 chr16:4760609 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 1 2 8 268 128 ENST00000300835.9 ENST00000450067.6 downstream downstream duplicates(5),mismatches(1) ACAGCACCACAGCTACCATCAGGATCCTGTCCACAGGCAGCCGCCTGCCTCGCCACCCCGGCAGGCCGGGTGGTCCTCGCAGGCCAG___GCCTCCCGACCCTCTGTGTTTGTGTCGCGAGCCCTTGAGCCGCATCCACCGGACCTCTTCCACCCTGAGGCGGCGATCAAGGACAACCCCTGGCCCAGAGGAGGGCCCTTCACAAAAGGTGGACCGGGCCCCCCAGCCCACCCTGGTGGTGATGCTGGAAGACATCGCCAGTCCTAGACCCCCCGCTGAG|AAAAGTACGAAGATCTGAGCTCTTCTGACGAGTCCTGCCCTGCTCCTCAGAGACAGAGGCCTTGCCGGAAGAAGGGTGTCAGCATCCACGAGGGACCGCGAGCCCTGGCCAGGATCACAGGCATTGGCCTGGGCGGCAGAGCCCCACGGCCTCGCTATG___AGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACC QHHSYHQDPVHRQPPASPPRQAGWSSQARPPDPLCLCREPLSRIHRTSSTLRRRSRTTPGPEEGPSQKVDRAPQPTLVVMLEDIASPRPPAE|kstki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1327 STK32B::LINC02105 ENSG00000152953.13::ENSG00000250447.6 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK32B ENSG00000152953.13 protein_coding + + chr4:5051480-5500994:+ chr4:5331393:+ chr4:5053207-5502721:+ chr4:5333120:+ LINC02105 ENSG00000250447.6 lncRNA - - chr5:53776048-53819722:- chr5:53785144:- chr5:53071878-53115552:- chr5:53080974:- chr4:5384123,chr4:5384124 chr5:53806141,chr5:53806140 NA NA chr4:5385850,chr4:5385851 chr5:53101971,chr5:53101970 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_kinase_domain(47%)| Kinase-like(0%),PK_Tyr_Ser-Thr(59%),Pkinase(59%)| 10 1 4 36 4 ENST00000282908.10 ENST00000673580.1 downstream downstream duplicates(4),mismatches(1) TTTCAGATTCTGCGGGCCATTGGTAAAGGGAGTTTTGGAAAG___...GCAGAAGTGCATCGAGAGGGATGAGGTTCGGAATGTTTTCCGGGAGCTGCAGATCATGCAAGGGCTGGAGCACCCCTTCCTGGTCAATCTGTG___GTACTCCTTCCAGGATGAGGAGGACATGTTCATGGTGGTGGACCTGCTCCTGGGAGGCGACCTGCGCTACCATCTGCAGCAGAATGTGCATTTCACAGAGGGGACTGTGAAACTCTACATCTGTGAGCTGGCACTGGCCCTGGAGTATCTTCAGAGGTACCACATCATCCACAG|ATCTGTGTCTCTGGAGATCCCTTTGCTCAGCCATCAGATCAAGCAGGCATCCATGGTTCAGAATG___GTGATGACCTGGGCAAGAGCTCACCAGTAAGGAGC QKCIERDEVRNVFRELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFTEGTVKLYICELALALEYLQRYHIIHr|svsleipllshqikqasmvqngddlgksspvr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 32B AGC YANK Q9NY57 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1330 RUNX1::LINC00189 ENSG00000159216.19::ENSG00000215533.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34859474:- chr21:36160098-37376965:- chr21:36231771:- LINC00189 ENSG00000215533.8 lncRNA + - chr21:29193480-29288205:+ chr21:29265070:- chr21:30565801-30660526:+ chr21:30637391:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Runt_domain(97%)| Runt(31%)| 1 2 8 158 6 ENST00000300305.7 unknown upstream downstream duplicates(5),mismappers(1),mismatches(3) GCGCCCCGGACGCCGGCGCTGCCCTGGCCGGCAAGCTGAGGAGCGGaGACCGCAGCATGGTGGAGGgGCTGGCCGACCACCCGGGCGAGCTGGTGCGC...GGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG___GGAAAAGCTTCACTCTGACCATCACTGTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACAGTGGATGGGCCCCGAGAACCTCGAA|TACAGAAATCATCACTGAGGAGTGGAAGTACTTCAAAATTGGACCAGTCTGGCTTgAATGCTGGCTCTGCCCCCCACTCTCTAGGACAAATTCTGAACTTCTCTGAGCCCAGTTTCTTCATCTAGAAATGGAAATGATGTCACCTATTTCCCATGGTTCTTTTGAGGAGTAGATGTGATCACTATAAACGACTCAGCAAAGCATCCAGCATATTTCAAAGACACATACCTCTTCCACTAACAACAGTAAGAGCAGATAATGTCCACTGATCATTTTCTATGTGCC...GGGAGCgGATGGGCTTTTTGGCAGCAGTACCCCTCTTTTCCATCTGCCACAG___GCTCATAGGTGGAAGAGACTTCCCTTGTATCAGATGAGTTGGACTGTGG GDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPR|iqksslrsgstskldqsglnagsaphslgqilnfsepsffi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1331 CDC73::PAQR9-AS1 ENSG00000134371.14::ENSG00000241570.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 211 TRUE 83 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193152444:+ chr1:193091113-193223945:+ chr1:193121574:+ PAQR9-AS1 ENSG00000241570.8 lncRNA + + chr3:142960650-143001559:+ chr3:142990015:+ chr3:142679492-142720401:+ chr3:142708857:+ chr1:193174504,chr1:193174505 chr3:142973728,chr3:142973726 NA NA chr1:193143634,chr1:193143635 chr3:142692570,chr3:142692568 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Paf1_complex_subunit_CDC73_N-terminal(99%)| CDC73_N(37%)| 2 1 8 273 5 ENST00000367435.5 ENST00000595774.5 downstream upstream duplicates(4) CCTATCCCAGCTGCCTATAACAGATACGATCAGGAAAGATTCAAAGGAAAAGAAG___AAACGGAAGGCTTCAAAATTGACACTATGGGAACCTACCATGGTATGACACTGAAATCTGTAACG|ACCGAGTTGCGCTCTTGTCGCCGAAAATGCAGTGCAATGGCATGATCTCGGCTGACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAACTATAG___CACGTTTTTCAGCACCAGGACAAGCATCATTGCTCAAGGAGAGCTTGGTTGACAACAGGAAGTTAG PIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVT|telrscrrkcsama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 1332 CDC73::PAQR9-AS1 ENSG00000134371.14::ENSG00000241570.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 211 TRUE 83 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193152444:+ chr1:193091113-193223945:+ chr1:193121574:+ PAQR9-AS1 ENSG00000241570.8 lncRNA + + chr3:142960650-143001559:+ chr3:142993997:+ chr3:142679492-142720401:+ chr3:142712839:+ chr1:193174504,chr1:193174505 chr3:142973728,chr3:142973726 NA NA chr1:193143634,chr1:193143635 chr3:142692570,chr3:142692568 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Paf1_complex_subunit_CDC73_N-terminal(99%)| CDC73_N(37%)| 2 0 4 273 9 ENST00000367435.5 ENST00000595248.1 downstream upstream duplicates(1) GATGTGACCCGAGATATTGTCAGCAGAGAGAGAGTATGGAGGACACGAACAACTATCTTACAAAGCACAGGAAAG___AATTTTTCCAAGAACATTTTTGCAAT...CACCAAACAGCCTATCCCAGCTGCCTATAACAGATACGATCAGGAAAGATTCAAAGGAAAAGAAG___AAACGGAAGGCTTCAAAATTGACACTATGGGAACCTACCATGGTATGACACTGAAATCTGTAACG|CACGTTTTTCAGCACCAGGACAAGCATCATTGCTCAAGGAGAGCTTGGTTGACAACAGGAAGTTAGAAGGAGTCTGAATTGTAACAAGTGTGGCAAGAGCACCAAGATCACTGTGTGTGTGTGTTCACAGAAAATGTACCAAAG___GGAGAAGCCTTAAAAACAAATGGCAGGTGTGGGCcCCAGAAAATCAACACATCGGGAAGAG TKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVT|hvfqhqdkhhcsrrawlttgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 1333 RUNX1::BACH1 ENSG00000159216.19::ENSG00000156273.16 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34859474:- chr21:36160098-37376965:- chr21:36231771:- BACH1 ENSG00000156273.16 protein_coding + - chr21:29194071-29630751:+ chr21:29265070:- chr21:30566392-31003071:+ chr21:30637391:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Runt_domain(97%)| Runt(31%)| 1 2 8 158 6 ENST00000300305.7 unknown upstream downstream duplicates(5),mismappers(1),mismatches(3) GCGCCCCGGACGCCGGCGCTGCCCTGGCCGGCAAGCTGAGGAGCGGaGACCGCAGCATGGTGGAGGgGCTGGCCGACCACCCGGGCGAGCTGGTGCGC...GGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG___GGAAAAGCTTCACTCTGACCATCACTGTCTTCACAAACCCACCGCAAGTCGCCACCTACCACAGAGCCATCAAAATCACAGTGGATGGGCCCCGAGAACCTCGAA|TACAGAAATCATCACTGAGGAGTGGAAGTACTTCAAAATTGGACCAGTCTGGCTTgAATGCTGGCTCTGCCCCCCACTCTCTAGGACAAATTCTGAACTTCTCTGAGCCCAGTTTCTTCATCTAGAAATGGAAATGATGTCACCTATTTCCCATGGTTCTTTTGAGGAGTAGATGTGATCACTATAAACGACTCAGCAAAGCATCCAGCATATTTCAAAGACACATACCTCTTCCACTAACAACAGTAAGAGCAGATAATGTCCACTGATCATTTTCTATGTGCC...GGGAGCgGATGGGCTTTTTGGCAGCAGTACCCCTCTTTTCCATCTGCCACAG___GCTCATAGGTGGAAGAGACTTCCCTTGTATCAGATGAGTTGGACTGTGG GDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPR|iqksslrsgstskldqsglnagsaphslgqilnfsepsffi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1343 SLC49A3::ARL15 ENSG00000169026.13::ENSG00000185305.12 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 127 FALSE NA FALSE NA SLC49A3 ENSG00000169026.13 protein_coding - - chr4:681829-689271:- chr4:686532:- chr4:675618-683060:- chr4:680321:- ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:53886713:- chr5:53179772-53606412:- chr5:53182543:- chr4:684092,chr4:684097 chr5:53925007,chr5:53925009 NA NA chr4:677881,chr4:677886 chr5:53220837,chr5:53220839 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Major_Facilitator_Superfamily(17%)|ADP-ribosylation_factor_family(23%) MFS_1(40%)|Arf(0%),Ras(0%),SRPRB(0%) 0 6 2 23 70 ENST00000515118.5 ENST00000504924.6 upstream downstream duplicates(1) CTCAGCTTTGCACCTGTGGCTGACGTCATTGCTGAGGACTTGGTCCTGTCCATGGAGCAGATCAACTGGCTGTCACTGGTCTACCTCGTGGTATCCACCCCATTTGGCGTGGCGGCCATCTGGATCCTGGACTCCGTCGGGCTCCGTGCGGCG|ATCAAAAAATATTTTGAACTTGAACCACTTGCACGTGGAAAACGCTGGATTCTACAGCCCTGCTCACTGGATGACATGGATGCACTGAAAGACAGCTTCTCTCAGCTGATTAATTTGTTAGAAGAAAAAGACCATGAAGCTGTAAGAATGTGAAATCTGGCAAAGAAAACAGGCTCCCAAAAGGCCTTGAACCTATCATGTTAGTTTCTCATTTTAATTTTATTTTGGTATCAAGACTATATTGGCTTCAGTATCTATTTTCCTCTGGTCATTTCAG...GTGAATATTCTGTAGATCAGATGAATTATCATCGGCATTAACGTCAAGTACACACTACTGAGAGAGAATTTATTCTCTGTTTACCACTAATTATCTTCCCC LSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAA|IKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEEKDHEAVRM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1348 CDC73::U2SURP ENSG00000134371.14::ENSG00000163714.18 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193152444:+ chr1:193091113-193223945:+ chr1:193121574:+ U2SURP ENSG00000163714.18 protein_coding + + chr3:142964497-143060725:+ chr3:142993997:+ chr3:142683339-142779567:+ chr3:142712839:+ chr1:193174504,chr1:193174505 chr3:142973728,chr3:142973726 NA NA chr1:193143634,chr1:193143635 chr3:142692570,chr3:142692568 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Paf1_complex_subunit_CDC73_N-terminal(99%)|CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Surp_module(100%),cwf21_domain(100%) CDC73_N(37%)|CID(100%),RRM_1(100%),Surp(100%),cwf21(100%) 2 0 4 273 9 ENST00000367435.5 ENST00000600150.5 downstream upstream duplicates(1) GATGTGACCCGAGATATTGTCAGCAGAGAGAGAGTATGGAGGACACGAACAACTATCTTACAAAGCACAGGAAAG___AATTTTTCCAAGAACATTTTTGCAAT...CACCAAACAGCCTATCCCAGCTGCCTATAACAGATACGATCAGGAAAGATTCAAAGGAAAAGAAG___AAACGGAAGGCTTCAAAATTGACACTATGGGAACCTACCATGGTATGACACTGAAATCTGTAACG|CACGTTTTTCAGCACCAGGACAAGCATCATTGCTCAAGGAGAGCTTGGTTGACAACAGGAAGTTAGAAGGAGTCTGAATTGTAACAAGTGTGGCAAGAGCACCAAGATCACTGTGTGTGTGTGTTCACAGAAAATGTACCAAAG___GGAGAAGCCTTAAAAACAAATGGCAGGTGTGGGCcCCAGAAAATCAACACATCGGGAAGAG TKQPIPAAYNRYDQERFKGKEETEGFKIDTMGTYHGMTLKSVT|hvfqhqdkhhcsrrawlttgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 1351 KRBOX5::SDR42E2 ENSG00000197302.11::ENSG00000183921.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KRBOX5 ENSG00000197302.11 protein_coding + + chr16:31713229-31794869:+ chr16:31723353:+ chr16:31724550-31806190:+ chr16:31734674:+ SDR42E2 ENSG00000183921.8 protein_coding + + chr16:22162492-22192208:+ chr16:22191865:+ chr16:22173813-22203529:+ chr16:22203186:+ chr16:31742457,chr16:31742454 chr16:22191156,chr16:22191150 NA NA chr16:31753778,chr16:31753775 chr16:22202477,chr16:22202471 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none KRAB_box(100%)| KRAB(100%)| 3 1 1 94 2 ENST00000316491.14 ENST00000684942.1 downstream upstream mismatches(1) GCTCAGTCTCTTCACCAGGGGCTCCCAGTCCTTCCATCTGGGAGGCCAAGGCGGCTTCGCGTTCTGAGAATAGACAGAACCTCTGTTACTCTGTGACCGGCAGGCACCcGGAGATCCGTAGCTCA...CGGAAACCTGGTCTCTCTGG___GTCTCGCTGTCTCTAAGCCGGACCTGATCACCTTTTTGGAGCAAAGGAAAGAGCCCTGGAATGTGAAGAGTGCAGAGACAGTAGCCATCCAGCCAG|CCCTGCTCTCCACAGAAACTTCGCCTCCTATCATCTTGGTATCAGTTATCAGTTGTAAGTACCAAGACATCAGTGTGTAAATACAACCATGTATAGATCATAATATGCACACGTGGGACTGGCAGAGAAGAAAAGCACCACAAGCCTGAGGTGGATGGGATCGA...AACAAGGTGAGCAGTTTGGGAAGGAGCTAAAAAAAAATGTATGCTCCTCTCTGCTAGGCTGAATTTTATGTGTGTATATAATTTTTGAAAGAATAATAATC GNLVSLGLAVSKPDLITFLEQRKEPWNVKSAETVAIQP|allstetsppiilvsvisckyqdisv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1354 CDC42BPA::ENSG00000253407 ENSG00000143776.20::ENSG00000253407.2 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 218 TRUE 84 CDC42BPA ENSG00000143776.20 protein_coding - - chr1:226989865-227318492:- chr1:227199557:- chr1:227177566-227506193:- chr1:227387258:- ENSG00000253407 ENSG00000253407.2 lncRNA - - chr8:131129761-131144948:- chr8:131130688:- chr8:132142008-132157195:- chr8:132142935:- chr1:227194514,chr1:227194521 chr8:131133509,chr8:131133513 NA NA chr1:227382215,chr1:227382222 chr8:132145756,chr8:132145760 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(50%),Pkinase(50%)| 1 0 4 70 2 ENST00000366766.8 ENST00000521490.2 upstream downstream duplicates(2) GGAG___GTTGCTGTAGTAAAACTAAAAAATGCAGATAAAGTGTTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG___ACAGCATGTTTTC...GATGTATTAGTGAATGGAGACAATAAATGGATTACAACCTTGCACTATGCTTTCCAGGATGACAATAACTTA|GACATAAGGCAGCATCACCAAATGCTCTCCAGGAGAGTTGCTACCTCTGCCAAAGGCA...GGcAGCTGCCATAtCATCTGTTGGTTCCAGGAAGAAACCACCTTGCCTaTGGCCTGGGGATAGAAGGATGACACCTCATCTAGTTACTTTATGCATGGCAGTTCTGCACTAGCAAAAACTCAGAGGCC DVLVNGDNKWITTLHYAFQDDNNL|dirqhhqmlsrrvatsakg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase MRCK alpha AGC DMPK GEK Q5VT25 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1355 CDC42BPA::ENSG00000253407 ENSG00000143776.20::ENSG00000253407.2 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 218 TRUE 84 CDC42BPA ENSG00000143776.20 protein_coding - - chr1:226989865-227318492:- chr1:227199557:- chr1:227177566-227506193:- chr1:227387258:- ENSG00000253407 ENSG00000253407.2 lncRNA - - chr8:131129761-131144948:- chr8:131131217:- chr8:132142008-132157195:- chr8:132143464:- chr1:227194514,chr1:227194521 chr8:131133509,chr8:131133513 NA NA chr1:227382215,chr1:227382222 chr8:132145756,chr8:132145760 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(50%),Pkinase(50%)| 1 0 4 70 0 ENST00000366766.8 ENST00000521490.2 upstream downstream duplicates(2) TGGATATACTCATCTGCCTTTATGATGAATGCAATAATTCTCCATTGAGAAGAGAGAAGAACATTCTCGAATACCTAGAATGGG___CTAAACCATTTACTTCT...GGAG___GTTGCTGTAGTAAAACTAAAAAATGCAGATAAAGTGTTTGCCATGAAAATATTGAATAAATGGGAAATGCTGAAAAGAGCTGAG___ACAGCATGTTTTC...GTGAATGGAGACAATAAATGGATTACAACCTTGCACTATGCTTTCCAGGATGACAATAACTTA|GCTAAGAAGACAAATGGAGATTTGCAGAAGAAAATGTC VNGDNKWITTLHYAFQDDNNL|akktngdlqkkm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase MRCK alpha AGC DMPK GEK Q5VT25 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1359 CNOT3::ARHGAP35 ENSG00000088038.20::ENSG00000160007.20 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT3 ENSG00000088038.20 protein_coding + + chr19:54137749-54155681:+ chr19:54146657:+ chr19:54641465-54659419:+ chr19:54650393:+ ARHGAP35 ENSG00000160007.20 protein_coding + - chr19:46860997-47005077:+ chr19:46866225:- chr19:47364254-47508334:+ chr19:47369482:- chr19:54147898 chr19:46868055 NA NA chr19:54651633 chr19:47371312 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Not1_N-terminal_domain__CCR4-Not_complex_component_(100%)| Not3(100%)| 2 2 1 314 52 ENST00000221232.11 unknown downstream downstream duplicates(5),mismatches(3) CCGGATTGAGGGCTTGAAGCGGCACATCGAGAAGCACCtCTACCACGTGCGCATGCTAGAGACCATCCTGCGCATGCTGGACAATGACTCCATaCTCGTTG...TTCGAGGAGAACGAGTTTCTCTACGATGACCTGGACCTCGAGGACATTC___CACAGGCGCTGGTCGCCACCTCCCCCCCCAGCCACAGCCACATGGAGGATGAGATCTTCAACCAGTCCAGCAGCACGCCaAaaTCAgCgcCCcaaAGCTCTCC...CCAACTGTACCACG___GAAAACTCTGAAGATGATAAGAAGAGGGGACGTTCCACAGACAGTGAAGTCAGCCAG|ATCGTGAAAAAGAAATCTTACCAACTGGACATCATGGATAGTGCTGTGATGAATAACAAAAGATTTTTTAAAAAAGGGAAAAACAGGCCAGGCGCAGTAGCTCGTGCCTGTAATCTCTGCATTTTGGGAGGCCGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAACCTGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGACACAGAAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCTGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAGGAGGGAAACTCCATCTCAAAAAAAGTCAC NCTTENSEDDKKRGRSTDSEVSQ|ivkkksyqldimdsavmnnkrffkkgknrpgavaracnlcilggrgrwit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCR4-NOT transcription complex subunit 3 1 Yes T-ALL leukaemia_lymphoma TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 1365 ZNF841::ZNF441 ENSG00000197608.12::ENSG00000197044.11 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF841 ENSG00000197608.12 protein_coding - - chr19:52064465-52095765:- chr19:52076044:- chr19:52567718-52599018:- chr19:52579297:- ZNF441 ENSG00000197044.11 protein_coding + - chr19:11767000-11784078:+ chr19:11780183:- chr19:11877815-11894893:+ chr19:11890998:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none KRAB_box(100%)| KRAB(100%)| 1 2 0 52 14 ENST00000594440.6 unknown upstream downstream none GGAAATGCCTGGACCCTGTTCAGAAAGCTTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTCGGCTTCCTGG___GACTCTGTCTTCCTGACCTGAAT...GGAAAGAGCCCTGGACTGTGGTGAGCCAAGTGAAAATAGCGAGGAACCCAAACTGTGGGGAATGCATGAAAGGCGTGATCACCG|CAATTAAGAGATGAACGACCCATGAGGACGTCTGTACACTCACTGCTTTCCCATGGATCTACTCCAG___GCTCTCTCTACCATATGACATCTGTAAAAAATAAGAAGTACATTAGTAAAG___CATTGATGACCAAG KEPWTVVSQVKIARNPNCGECMKGVIT|aikr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1368 PHF8::SYN1 ENSG00000172943.21::ENSG00000008056.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF8 ENSG00000172943.21 protein_coding - - chrX:53936676-54048958:- chrX:53962844:- chrX:53963109-54075391:- chrX:53989277:- SYN1 ENSG00000008056.14 protein_coding - - chrX:47571901-47619857:- chrX:47605067:- chrX:47431300-47479256:- chrX:47464466:- chrX:53956376 chrX:47605264 NA NA chrX:53982809 chrX:47464663 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none JmjC_domain__hydroxylase(100%),Jumonji_helical_domain(100%),PHD-finger(100%)|Synapsin__ATP_binding_domain(92%) Cupin_8(100%),JHD(100%),JmjC(100%),PHD(100%)|Synapsin_C(99%),TIMP(100%) 1 1 0 117 1 ENST00000357988.9 ENST00000295987.13 upstream downstream none GTATA___TCTATCCTTCcCTGGAGTCTGATGATGATGACCCTGCTTTGAAATCTCGACCCAAGAAAAAGAAGAATTCAGATGATGCTCCATGGAGTCCTAAAG|TTTGCCCAGATGGTTCG...GAATTCCCTCTAATTGATCAGACCTTCTACCCCAATCACAAAGAAATG___CTCAGCAGTACAACGTACCCCGTGGTTGTGAAGATGGGGCACGCACACTCTGG YIYPSLESDDDDPALKSRPKKKKNSDDAPWSPK|vcpdg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1369 PHF8::ENSG00000283743 ENSG00000172943.21::ENSG00000283743.2 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF8 ENSG00000172943.21 protein_coding - - chrX:53936676-54048958:- chrX:53962844:- chrX:53963109-54075391:- chrX:53989277:- ENSG00000283743 ENSG00000283743.2 lncRNA - - chrX:47575128-47628742:- chrX:47605067:- chrX:47434527-47488141:- chrX:47464466:- chrX:53956376 chrX:47605264 NA NA chrX:53982809 chrX:47464663 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none JmjC_domain__hydroxylase(100%),Jumonji_helical_domain(100%),PHD-finger(100%)| Cupin_8(100%),JHD(100%),JmjC(100%),PHD(100%)| 1 1 0 117 1 ENST00000357988.9 ENST00000638776.2 upstream downstream none GTATA___TCTATCCTTCcCTGGAGTCTGATGATGATGACCCTGCTTTGAAATCTCGACCCAAGAAAAAGAAGAATTCAGATGATGCTCCATGGAGTCCTAAAG|TTTGCCCAGATGGTTCG...GAATTCCCTCTAATTGATCAGACCTTCTACCCCAATCACAAAGAAATG___CTCAGCAGTACAACGTACCCCGTGGTTGTGAAGATGGGGCACGCACACTCTGG YIYPSLESDDDDPALKSRPKKKKNSDDAPWSPK|vcpdg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1373 ENSG00000281348::CDH1 ENSG00000281348.1::ENSG00000039068.20 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000281348 ENSG00000281348.1 protein_coding + + chr16:29817239-29830627:+ chr16:29817292:+ chr16:29828560-29841948:+ chr16:29828613:+ CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68801670:+ chr16:68771195-68869440:+ chr16:68835573:+ chr16:29818030 chr16:68801612 NA NA chr16:29829351 chr16:68835515 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion medium none |Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%),Cadherin_prodomain_like(68%) PAXIP1_C(17%)|Cadherin(100%),Cadherin_C(100%),Cadherin_pro(0%) 0 13 0 393 108 ENST00000562285.1 ENST00000261769.10 downstream upstream duplicates(5) AGCCAGTGACACCAAAGGACTCCCTGATTGACCGGAGACGCACCCCAG|TGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAG___GCCTCCGTTTCTGGAATCCAAGCAGAATTGCT...TCAGCTGCCCAGAAAATGAAAAAGGCCCATTTCCTAAAAACCTGGTTCAG___ATCAAATCCAACAAAGACAAAGAAGGCAAGGTTTTCTACAGCATCACTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site 1375 KCNMB4::MBD6 ENSG00000135643.5::ENSG00000166987.15 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 220 FALSE NA KCNMB4 ENSG00000135643.5 protein_coding + + chr12:70366290-70434292:+ chr12:70400336:+ chr12:70760070-70828072:+ chr12:70794116:+ MBD6 ENSG00000166987.15 protein_coding + + chr12:57520710-57530148:+ chr12:57528144:+ chr12:57914493-57923931:+ chr12:57921927:+ chr12:70405406,chr12:70405406,chr12:70405405 chr12:57527980,chr12:57527981,chr12:57527970 NA NA chr12:70799186,chr12:70799186,chr12:70799185 chr12:57921763,chr12:57921764,chr12:57921753 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Calcium-activated_potassium_channel__beta_subunit(75%)| CaKB(52%)| 0 1 0 264 71 ENST00000258111.5 ENST00000552163.1 downstream upstream mismatches(2) CTCCTATATCCCTCCCTGTAAGAGAGAAAATCAGAAGAATTTGGAAAGTGTCATGAATTGGCAACAGTACTGGAAAGATGAGATTGGTTCCCAGCCATTTACTTGCTATTTTAATCAACATCAAAG|CAGATCCCTCCAGAGCAGCCAGAAGCCCCCTGTCTACCCCCCGAGAGCCCTGCCTCAGCCCTCGAACCAGAGCCTGCCAGGCCTCCCCTCAGTGCCTTAGCCCCACCCCATGGTTCTCCCGACCCCCCAGTCCCTGAGCTGCTCACcGGGAG...AGtCCAGCCCGGGGCCGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACTGGCCCTCAAATGGGGGACACGTGGTGGCTTCAATGGACAAATGGAAAGGTC SYIPPCKRENQKNLESVMNWQQYWKDEIGSQPFTCYFNQHQs|rslqssqkppvyppralpqpsnqslpglpsvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1379 ASH2L::NSD3 ENSG00000129691.16::ENSG00000147548.17 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASH2L ENSG00000129691.16 protein_coding + + chr8:38105493-38144076:+ chr8:38128951:+ chr8:37963011-38001594:+ chr8:37986469:+ NSD3 ENSG00000147548.17 protein_coding - + chr8:38269704-38382272:- chr8:38282857:+ chr8:38127222-38239790:- chr8:38140375:+ chr8:38132969,chr8:38132967 chr8:38279981,chr8:38279976 NA NA chr8:37990487,chr8:37990485 chr8:38137499,chr8:38137494 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none SPRY_domain(100%)| SPRY(6%)| 4 2 5 1143 17 ENST00000545394.2 unknown downstream upstream duplicates(8),mismatches(2) CCTGACCCCGAGAAGCTGGAACTTGACTGCTGGGCAGGAAAACCTATTCCTGGAGACCTCTACAGAGCCTGCTTGTATGAACGGGTTTTGTTAGCCCTACA...CTCCCCAGTTAAAGATCTCAGATGACCGGCTGACTGTGGTTGGAGAGAAGGGCTACTCTATGGTGAGGGCCTCTCATGGAGTACGGAAgGGTGCCTGGTATTTTGAAATCACTGTGGATGAGATGCCACCAGATACCGCTGCCAGACTGGGTTGGTCCCAGCCCCTAG___GAAACCTTCAAGCTCCTTTAGGTTATGATAAATTTAGCTATTCTTGGCGGAGCAAAAAGGGAACCAAGTTCCACCAGTCCATTGGCAAACACTACTCTTCTGGCTATGGACAGGGAGACGTCCTGGGATTTTATATTAATCTTCCTGAAGACACAGAGACAGCCAAGTCATTGCCAGACACATACAAAGATAAG|CCATTCACCCATGGAAGAACATTTGGATTGTTTCCAGATTTTGGCTTTACAAATAAAGCTGCTATGAACATTCTGGTGAAAGTTTTCGTG...TAGATTTTCATTTTCCTGGATAAATGGCCAGGAGTGTGTCTGCTGCACCATATGGTGAGTGTATGTTTCCTTATTAAGGAAACTGCCAAACTATTGTCCAGAGTTGCTATACCATCGTTATGTTCCCACCAGCAGTTCATGAG PQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDK|pfthgrtfglfpdfgftnkaamnilvkvf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1388 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 223 TRUE 85 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 1 0 4 617 ENST00000503441.1 ENST00000265070.7 upstream downstream none GCTCTGCCTCCTGTCAGATCAGCAGCAGCATTAGATTCTCAC___ATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTAC...AGATTGCtAAGTTTAAATCCTTTTGAAAGGAACCTAtACAAAATAGCCAGAAGCTTGTTTAGTTATTTAGGCAAACTTGAAAGTTATCAGTCATAGAGcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 1389 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 223 TRUE 85 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32121495:- chr5:32103551-32122047:- chr5:32121601:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 0 1 0 2 617 ENST00000503441.1 ENST00000265070.7 upstream downstream none TGAAGCTGTTCAAGTCTTTCTCCCAATTACAGTCTTCATAAGA|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 1391 IL1RAPL2::NRK ENSG00000189108.14::ENSG00000123572.17 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IL1RAPL2 ENSG00000189108.14 protein_coding + + chrX:104566199-105767829:+ chrX:105654890:+ chrX:103810880-105011822:+ chrX:104898883:+ NRK ENSG00000123572.17 protein_coding + + chrX:105822539-105958610:+ chrX:105905265:+ chrX:105066532-105202602:+ chrX:105149258:+ chrX:105655438,chrX:105655435 chrX:105904720,chrX:105904714 NA NA chrX:104899431,chrX:104899428 chrX:105148713,chrX:105148707 NA NA sense sense unknown intron CDS/splice-site deletion/read-through low none Immunoglobulin_domain(62%)|CNH_domain(100%),Protein_kinase_domain(20%) Ig_2(100%),Ig_6(100%),TEX13(100%),ig(66%),zf-RanBP(100%)|CNH(100%),PK_Tyr_Ser-Thr(1%),Pkinase(1%) 0 1 5 2 7 ENST00000372582.6 ENST00000243300.14 downstream upstream duplicates(3),mismappers(1) AAGCCATACTTCAG___CTTTACTCACAGACAAGCCTCCCAAGCCATTGTTCCCCATGGAGAATCAGCCAAGTGTTATAGATGTCCAGCTGG___AACACACCACTA...CTTTCAGATACACATCAACTTGTTCTCCTGTCATCAGAATTTGGGCTGAAAGAAAATGAATTTGGAAAATCTGTGAGACCTAG|CTCTGTGTAACCTTCAACCCTTGGAAGCTCTCTTCGTTATTTTGCGGGAATCTGCTCCCACAGTCAAATCCAGCGGATG___GTCCCGTAAGTTCCACAATTTCATGGAAAAGTGTACGATAAAAAATTTCCTGTTTCGTCCTACTTCTGCAAACATGCTTCAACACCCATTTGTTCGGGATATAAAAAATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Nik-related protein kinase STE STE20 MSN Q7Z2Y5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1410 EXT1::SAMD12 ENSG00000182197.13::ENSG00000177570.15 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- SAMD12 ENSG00000177570.15 protein_coding - - chr8:118189455-118622112:- chr8:118197732:- chr8:119201694-119634351:- chr8:119209971:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Exostosin_family(73%)| Exostosin(0%)| 0 1 1 850 34 ENST00000378204.7 ENST00000409003.5 upstream downstream small_insert_size(1) CAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCTCGCTGTGACAGAGACAACACCGAGTATGAGAA|CATCATCTGAGGGTTCTCCATAAACACGGTTAGgCTTCCAAGCTGCTGT...AGAAGATATCCTTGGATCGTGGACAGATTAACTGGATTAACTGAAAAAAGCACCCATTCAGTCAATATTATGGGTTTTGGAAAAATCTTaCTTTGCTGTGGATTTAAAATGAGGTGCATAATATAATGC RNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEn|ii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Ovary,Stomach no_match TRUE Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Pancreatic adenocarcinoma,Sarcoma,Lung squamous cell carcinoma,Uterine Carcinosarcoma BREAST,HEAD_AND_NECK,PROSTATE,PANCREAS,BONE_AND_SOFT_TISSUE,LUNG,UTERUS exact 119122324,119122324,119122324,119122324,119122324,119122324,119122324 TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE 119209971,119209971,119209971,119209971,119209971,119391939,119209971 TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE YES,YES,YES,YES,YES,YES,YES Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 1411 MYO9B::LINC00904 ENSG00000099331.14::ENSG00000271171.3 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 226 TRUE 86 MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17075874:+ chr19:17186587-17325346:+ chr19:17186684:+ LINC00904 ENSG00000271171.3 lncRNA - - chr19:34891605-34905139:- chr19:34899005:- chr19:35382509-35396043:- chr19:35389909:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 36 5 ENST00000595618.5 ENST00000653476.1 downstream downstream none GTCGTCCGGCCGGGGACCCGGCCCGGGACCGGCGGCGCGCGGCGGCCGAGGCCAG|GGgCTTGCTGTGTCATCCAGGCTGGAGTGCAGTGATATGAGgATGG...CAAGCAATGCTCCCACCTTGGCCTCCCAAAGCGCTGGGATTACAGGCATGAGCCACCATGCCTGGCCATTGCCATTGCA___GTGGAGTAAATGTCCCTCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1412 MYO9B::LINC00904 ENSG00000099331.14::ENSG00000271171.3 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 226 TRUE 86 MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17075874:+ chr19:17186587-17325346:+ chr19:17186684:+ LINC00904 ENSG00000271171.3 lncRNA - - chr19:34891605-34905139:- chr19:34903083:- chr19:35382509-35396043:- chr19:35393987:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 36 0 ENST00000595618.5 ENST00000659576.1 downstream downstream none GTCCGGCCGGGGACCCGGCCCGGGACCGGCGGCGCGCGGCGGCCGAGGCCAG|AGACCAACAATTGTCAGCACAGCAAAACTGGGCATTTCTTTTCTTACTGAGCTTTGCAGCTACCTACACAGTTGTGTGTGGCATCTCCTCCTGGGTGCAAGGACATGAGATGACATCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1417 DCBLD2::PCGF3 ENSG00000057019.16::ENSG00000185619.19 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DCBLD2 ENSG00000057019.16 protein_coding - - chr3:98795941-98901695:- chr3:98808081:- chr3:98514785-98620539:- chr3:98526925:- PCGF3 ENSG00000185619.19 protein_coding + + chr4:705748-770089:+ chr4:730630:+ chr4:699537-763877:+ chr4:724419:+ chr3:98805833,chr3:98805836,chr3:98805838 chr4:720177,chr4:720174,chr4:720174 NA NA chr3:98524677,chr3:98524680,chr3:98524682 chr4:713966,chr4:713963,chr4:713963 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none CUB_domain(100%),F5/8_type_C_domain(100%),LCCL_domain(100%)|RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%) CUB(100%),F5_F8_type_C(100%),LCCL(100%)|RAWUL(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%) 32 50 72 1316 258 ENST00000326840.11 ENST00000362003.10 upstream upstream duplicates(20),mismatches(7) CGTGCCCCAAAATTTACGCAACCACTACAACCTCGCAGTAGCAATGAATTTCCTGCACAGACAGAACAAACAACTGCCAGTCCTGATATCAGAAATACTACCGTAACTCCAAATGTAACCAAAG___ATGTAGCGCTGGCTGCAGTTCTTGTCCCTGTGCTGGTCATGGTCCTCACTACTCTCATTCTCATATTAGTGTGTGCTTGGCACTGGAGAAACAG|GCGTCACAATGTAGCAGGGACCCCAGGCGTCGTGCTCAG___AAAATGGAAAAAGAGCCAGGGCCGGAAGGAGGGTGCAGAAGCGAGTCCGCGTGCGGAGCCAGGAGGCAGCGTCGCGTGGGAGTGCTGGCCTGAAGCCTCCATGCCCCGGCAGAGGGACGGACACGtGGACGTCTAGCGGAG___AAGCCAAAGATGTTGACCAGGAAGATCAAGCTGTGGGACATCAACGCCCACATCACCTGCCGCCTGTGCAGCGGGTACCTCATCGAC RAPKFTQPLQPRSSNEFPAQTEQTTASPDIRNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNr|rhnvagtpgvvlrkwkksqgrkegaeaspraepggsvawecwpeasmprqrdghvdv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1421 DAAM1::LINC01500 ENSG00000100592.16::ENSG00000258583.7 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 129 FALSE NA FALSE NA DAAM1 ENSG00000100592.16 protein_coding + + chr14:59188646-59371405:+ chr14:59188768:+ chr14:59655364-59838123:+ chr14:59655486:+ LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:59183663:+ chr14:59113349-59650965:+ chr14:59650381:+ chr14:59202521 chr14:59181957 NA NA chr14:59669239 chr14:59648675 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 10 1 12 16 ENST00000360909.8 ENST00000666814.1 downstream upstream duplicates(1) ACTGTTTAACCGGATCCCATTGTACCCAGAGTGCAGAGCCGCaTTTCCAGCATGCAGGGGCTGCTCAG|AATTTGACTTGGGGAAGAAGAAGAAAAGAAGGTGGATTTCAGCATGAAAGAATCTAAACAGTCATTAGTGAACAAATGTGTAGCAGTGCTGTCCAACAGAACTTTCTGAAGAAGTAATGGGAATACTCTGTATCTGTGATGTCCTGTATGGTAGCCACTGGCCTCACACAGCTCTTGAGCACTTGAAATGTGGCTACTGTGACTGAGTAATTGAGTTTTAAAATTTCATCAATTTTAATTAATTGAAATTTAAATAGCCACATGAGGCCAGTGACTACAGAATTGAACAGCACAGGTCTCACAGATGGACTAAGAGTAAGCCAGTTACGAAGAAGCTTATACAGGAAGACCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1428 ELP2::MOCOS ENSG00000134759.14::ENSG00000075643.6 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 229 FALSE NA ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36136377:+ chr18:33709407-33760520:+ chr18:33716340:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36266749:+ chr18:33767460-33852120:+ chr18:33846712:+ chr18:36138855,chr18:36138853 chr18:36257055,chr18:36257050 NA NA chr18:33718818,chr18:33718816 chr18:33837018,chr18:33837013 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none WD_domain__G-beta_repeat(21%)|MOSC_domain(45%) WD40(35%)|MOSC(16%) 0 1 0 224 150 ENST00000358232.11 ENST00000261326.6 downstream upstream none AAGTGATTCACTGGGAAATAGAGGATAATCAG|GTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGACaAGaAAcCTGGGCAACGAAACCAGCATGTTTTCCAAAAACTcTCTGAGAGTCGTGAAACAAAG___GTGAACTTTGGCATaTACCTGATGCATGCATCATTGGATTTATCCTCCCCATGTTTCCTG VIHWEIEDNQ|VLGPCHRCQMICIDkkpGQRNQHVFQKLSESRETKVNFGiYLMHASLDLSSPCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1432 RAP1GDS1::TSPAN5 ENSG00000138698.15::ENSG00000168785.8 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAP1GDS1 ENSG00000138698.15 protein_coding + + chr4:98261384-98443858:+ chr4:98352601:+ chr4:99182535-99365009:+ chr4:99273752:+ TSPAN5 ENSG00000168785.8 protein_coding - + chr4:98470367-98658611:- chr4:98518125:+ chr4:99391518-99579762:- chr4:99439276:+ chr4:98363883 chr4:98509786 NA NA chr4:99285034 chr4:99430937 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Armadillo/beta-catenin-like_repeat(22%)| Arm(14%)| 1 0 2 196 4 ENST00000408927.8 unknown downstream upstream duplicates(1) CAAGCCCTGGCTCAAAATA___ATACGGAAACAAGTGAAAAAATCCAAGCAAGTGGAATACTTCAGCTGTTTGCAAGTCTGTTGACTCCACAGTCTTCCTGCAA...ACATATGTTACGATAGCC|GCTCAAGTGATCCTCCCCCCTTTAGCCTCCAAAAGTGCTGGGATTACAGGCGTGAGCCACACCACACCCAGTCTATCCTGACA ICYDS|rssdpppfslqkcwdyrrephhtqsil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAP1, GTP-GDP dissociation stimulator 1 1 Yes T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1454 ENSG00000248515::SLIT2 ENSG00000248515.2::ENSG00000145147.20 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000248515 ENSG00000248515.2 lncRNA + + chr4:19455418-19938448:+ chr4:19533618:+ chr4:19457041-19940071:+ chr4:19535241:+ SLIT2 ENSG00000145147.20 protein_coding + + chr4:20251905-20620561:+ chr4:20467752:+ chr4:20253528-20622184:+ chr4:20469375:+ chr4:19855812 chr4:20385195 NA NA chr4:19857435 chr4:20386818 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(84%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(65%) |EGF(100%),LRRCT(100%),LRRNT(67%),LRR_1(100%),LRR_5(28%),LRR_8(20%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 2 4 1 108 8 ENST00000511431.1 ENST00000504154.6 downstream upstream duplicates(1) GTTGCTTGCTCGGAATGGCCCTCCTGAGCAAACAACAGACGGTGCTCAAAGTAACAACTGGACTTAATAAAAGGAGCTTACACGAAGGAGGAGCTGAAGGC...CCCGGCCGTCTGCCTTCCGACTCCGGTGATGATTCTTCCTGCGGTCTG___ATCAAGATTCTATGCAGTTAACTTTGTATCCAAGGATCTATAGCCAAGAAATTTGGAGCTCAGTTTCAAAC|TGATCTCAGTGAAAACCAAATTCAGGCAATCCCAAGGAAAGCTTTCCGTGGGGCAGTTGACATAAAAAATTT___GCAACTGGATTACAACCAGATCAGCTGTATTGAAGATGGGGCATTCAGGGCTCTCCGGGACCTGGAAGTGCT___CACTCTCAAC...AACCATATGCCTAAACTTAGGACTTT___TCGACTGCATTCAAACAACCTGTATTGTGACTGCCACCTGGCCTGGCTCTCCGACTGGCTTCGCCAAAGGCCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-218-1 chr4:20528275-20528384:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1459 LARP4::DIP2B ENSG00000161813.23::ENSG00000066084.13 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 132 FALSE NA FALSE NA LARP4 ENSG00000161813.23 protein_coding + + chr12:50392383-50480004:+ chr12:50474167:+ chr12:50786166-50873787:+ chr12:50867950:+ DIP2B ENSG00000066084.13 protein_coding + + chr12:50504985-50748657:+ chr12:50625976:+ chr12:50898768-51142440:+ chr12:51019759:+ chr12:50475564,chr12:50475502,chr12:50475561 chr12:50525054,chr12:50525054,chr12:50525048 NA NA chr12:50869347,chr12:50869285,chr12:50869344 chr12:50918837,chr12:50918837,chr12:50918831 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none La_domain(100%)|AMP-binding_enzyme(100%),DMAP1-binding_Domain(82%) La(100%)|AMP-binding(100%),DMAP_binding(22%) 6 2 8 105 30 ENST00000293618.12 ENST00000301180.10 downstream upstream duplicates(3) ACTCAATATGAGTACCAGTTCTCCATGTGCTGCTGAGCTTACTGCATTAAG___CACAACTCAGCAAGAAAAGGATCTAATAGAAGATTCCTCTGTTCAGAAGGATGGTCTCAATCAGACAACTATACCAGTTTCTCCTCCAAGTACTACAAAGCCATCGAGGGCAAGTACTGCTTCACCATGTAATAATAACATAAATGCAGCTACAGCTGTGGCTCTACAG|GGGACATCACCCAGAAGGGCTATGAAAAGAAAAGGTCCAAACTCCTATCTCCTTACAGCCCGCAGACACAAG___AAACTGATTCAGCAGTACAGAAAGAACTTAGAAACCAGACACCTGC LNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVALQ|gtsprramkrkgpnsylltarrhkkliqqyrknletrhl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1460 DNAJC6::LEPR ENSG00000116675.16::ENSG00000116678.20 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 232 TRUE 87 DNAJC6 ENSG00000116675.16 protein_coding + + chr1:65248219-65415871:+ chr1:65254649:+ chr1:65713902-65881554:+ chr1:65720332:+ LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65565546:+ chr1:65886335-66107242:+ chr1:66031229:+ chr1:65360814,chr1:65360810 chr1:65540774,chr1:65540767 NA NA chr1:65826497,chr1:65826493 chr1:66006457,chr1:66006450 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |Ig-like_C2-type_domain(100%),Obesity_receptor_immunoglobulin_like_domain(100%) |Lep_receptor_Ig(100%),ObR_Ig(100%) 2 3 9 30 143 ENST00000494710.6 ENST00000349533.11 downstream upstream duplicates(2),low_entropy(1),mismatches(4) CGGCGAGCGGTGGCGCTCGGCTCGGGCGACCGCGGCGGGGGAGGGCGCGGCGCACCGATGGGCGCCACTGAGAAGGGAGGCCAGAAGAGCCGGAAGCTGTTTTCCTTGCGGCGGCCGTGGAAGGCGACCCGGCGGCTGTGGAGGCCACGCTCAGCTCGCCAGGCGGCGCAGG|GTGTACTTCTCTGAAGTAAGATGATTTGTCAAAAATTCTGTGTGGTTTTGTTACATTGGG___AATTTATTTATGTGATAACTGCGTTTAACTTGTCATATCCAATTACTCCTTGGAGATTTAAGTTGTCTTGCATGCCACCAAATTCAACCTATGACTACTTCCTTTTGCCTGCTGGACTCTCAAAGAATtCTTCAAATTCGAATGGACATTATGAGACAGCTGTTGAACCTAAGTTTAATTCAAGTGGTACTCACTTTTCTAACTTATCCAAAACAACTTTCCACTGTTGCTTTCGGAGTGAGCAAGATAGAAACTGCTCCTTATGTG MGATEKGGQKSRKLFSLRRPWKATRRLWRPRSARQAAQ|gvll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1461 DNAJC6::LEPR ENSG00000116675.16::ENSG00000116678.20 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 232 TRUE 87 DNAJC6 ENSG00000116675.16 protein_coding + + chr1:65248219-65415871:+ chr1:65264932:+ chr1:65713902-65881554:+ chr1:65730615:+ LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65565546:+ chr1:65886335-66107242:+ chr1:66031229:+ chr1:65360814,chr1:65360810 chr1:65540774,chr1:65540767 NA NA chr1:65826497,chr1:65826493 chr1:66006457,chr1:66006450 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |Ig-like_C2-type_domain(100%),Obesity_receptor_immunoglobulin_like_domain(100%) |Lep_receptor_Ig(100%),ObR_Ig(100%) 0 1 10 1 143 ENST00000395325.7 ENST00000349533.11 downstream upstream duplicates(2),mismatches(4) GCAGAGGGAGGAAGCAGAGAATGAAAGATTCTGAAAATAAAG|GTGTACTTCTCTGAAGTAAGATGATTTGTCAAAAATTCTGTGTGGTTTTGTTACATTGGG___AATTTATTTATGTGATAACTGCGTTTAACTTGTCATATCCAATTACTCCTTGGAGATTTAAGTTGTCTTGCATGCCACCAAATTCAACCTATGACTACTTCCTTTTGCCTGCTGGACTCTCAAAGAATACTTCAAATTCGAATGGACATTATGAGACAGCTGTTGAACCTAAGTTTAATTCAAG MKDSENK|gvll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1475 FASN::ARL16 ENSG00000169710.9::ENSG00000214087.9 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 236 TRUE 88 FASN ENSG00000169710.9 protein_coding - - chr17:82078338-82098294:- chr17:82092455:- chr17:80036214-80056170:- chr17:80050331:- ARL16 ENSG00000214087.9 protein_coding - - chr17:81681187-81683797:- chr17:81682675:- chr17:79648217-79650827:- chr17:79649705:- chr17:82091460,chr17:82091463 chr17:81683154,chr17:81683154 NA NA chr17:80049336,chr17:80049339 chr17:79650184,chr17:79650184 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Beta-ketoacyl_synthase__C-terminal_domain(86%),Beta-ketoacyl_synthase__N-terminal_domain(100%)|ADP-ribosylation_factor_family(53%) Ketoacyl-synt_C(37%),ketoacyl-synt(100%)|Arf(46%) 28 12 48 805 1134 ENST00000306749.4 ENST00000571082.5 upstream downstream duplicates(2),mismatches(11) AGGAGCAGCTCATCCGCTCGTTGTACCAGTCGGCCGGAGTGGCCCCTGAGTCATTTGAATACATCGAAGCCCACGGCACAGGCACCAAG___GTGGGCGACCCCCAGGAGCTGAATGGCATCACCCGAGCCCTGTGCGCCACCCGCCAGGAGCCGCTGCTCATCGGCTCCACCAAGTCCAACATGGGGCACCCGGAGCCAGCCTCGGGGCTGGCAGCCCTGGCCAAG|GCCTGTGCCGCGGATACCAGTATGGAGAACTGATGGCCACATGAGGACAGAGACGAGTGACACCAGGTCGTCTTCATAAAACTCGATTCCCTCTGCTTCTGCTTGTTCCCAAAGCTTTGTTTAAAGCTACTTTGGGCCGGGCGCGGTGGCTTACTCCTGTAATCCCAGCACTTTGGGAAGCTGAGGTGGGCGAATCACGAGGTCAGGAGATGGAGACCATCCTGACTAACATGGTGAAACCCCG EQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAK|acaadtsmen* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1476 FASN::ARL16 ENSG00000169710.9::ENSG00000214087.9 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 236 TRUE 88 FASN ENSG00000169710.9 protein_coding - - chr17:82078338-82098294:- chr17:82092455:- chr17:80036214-80056170:- chr17:80050331:- ARL16 ENSG00000214087.9 protein_coding - - chr17:81681187-81683797:- chr17:81682149:- chr17:79648217-79650827:- chr17:79649179:- chr17:82091460,chr17:82091463 chr17:81683154,chr17:81683154 NA NA chr17:80049336,chr17:80049339 chr17:79650184,chr17:79650184 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Beta-ketoacyl_synthase__C-terminal_domain(86%),Beta-ketoacyl_synthase__N-terminal_domain(100%)|ADP-ribosylation_factor_family(53%) Ketoacyl-synt_C(37%),ketoacyl-synt(100%)|Arf(20%) 0 4 7 805 956 ENST00000306749.4 ENST00000622299.5 upstream downstream duplicates(1),mismatches(1) CCAGGAGCAGCTCATCCGCTCGTTGTACCAGTCGGCCGGAGTGGCCCCTGAGTCATTTGAATACATCGAAGCCCACGGCACAGGCACCAAG___GTGGGCGACCCCCAGGAGCTGAATGGCATCACCCGAGCCCTGTGCGCCACCCGCCAGGAGCCGCTGCTCATCGGCTCCACCAAGTCCAACATGGGGCACCCGGAGCCAGCCTCGGGGCTGGCAGCCCTGGCCAAG|TTTGTGATGGACGCCTCTGACCCCACCCAGCTCTCTGCATCCTGTGTGCAGCTCTTAGGTCTCCTTTCTGCAGAACAACTTGCAGAAGCATCGGTGCTGATACTCTTCAATAAAAT___CGACCTACCCTGTTACATGTCCACGGAGGAGATGAAGTCATTAATCAGGCT QEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALAK|FVMDASDPTQLSASCVQLLGLLSAEQLAEASVLILFNKIDLPCYMSTEEMKSLIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1478 TVP23C::EPHA6 ENSG00000175106.17::ENSG00000080224.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TVP23C ENSG00000175106.17 protein_coding - - chr17:15502264-15563595:- chr17:15545785:- chr17:15405578-15466909:- chr17:15449099:- EPHA6 ENSG00000080224.18 protein_coding + - chr3:96814581-97761532:+ chr3:97215607:- chr3:96533425-97480376:+ chr3:96934451:- chr17:15545057,chr17:15545061 chr3:97218242,chr3:97218243 NA NA chr17:15448371,chr17:15448375 chr3:96937086,chr3:96937087 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Eukaryotic_protein_of_unknown_function_(DUF846)(86%)| DUF846(24%)| 82 128 112 571 482 ENST00000225576.7 unknown upstream downstream duplicates(52),mismappers(67),mismatches(65) GTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAG___GAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTtACAGTAAAGTGGCTG|ACAAAGTTTGCTCTTGTTGCCCAGACTGAAGTGCAGTGACATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGATGCCTGCCATGATGCCTGGCTACACTAATTATCTTATACAACAATTTCTCTTATAGATGTTTGAAATTTCATTATCCACAGAAAATTGAAATCAGAATATTGAAGTATTGATTGAAA VTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL|tkfalvaqtevq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1479 TVP23C-CDRT4::EPHA6 ENSG00000259024.7::ENSG00000080224.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TVP23C-CDRT4 ENSG00000259024.7 protein_coding - - chr17:15436021-15563561:- chr17:15545785:- chr17:15339338-15466875:- chr17:15449099:- EPHA6 ENSG00000080224.18 protein_coding + - chr3:96814581-97761532:+ chr3:97215607:- chr3:96533425-97480376:+ chr3:96934451:- chr17:15545057,chr17:15545061 chr3:97218242,chr3:97218243 NA NA chr17:15448371,chr17:15448375 chr3:96937086,chr3:96937087 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Eukaryotic_protein_of_unknown_function_(DUF846)(100%)| DUF846(24%)| 82 128 112 571 482 ENST00000522212.6 unknown upstream downstream duplicates(52),mismappers(67),mismatches(65) GTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAG___GAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTTCAGTACTGTGGGTGATATTTGCCTTTAGTGCACTCTTCTCCTTtACAGTAAAGTGGCTG|ACAAAGTTTGCTCTTGTTGCCCAGACTGAAGTGCAGTGACATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGATGCCTGCCATGATGCCTGGCTACACTAATTATCTTATACAACAATTTCTCTTATAGATGTTTGAAATTTCATTATCCACAGAAAATTGAAATCAGAATATTGAAGTATTGATTGAAA VTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL|tkfalvaqtevq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1480 ITM2B::RB1 ENSG00000136156.15::ENSG00000139687.16 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITM2B ENSG00000136156.15 protein_coding + + chr13:48232612-48270357:+ chr13:48258947:+ chr13:48806748-48844493:+ chr13:48833083:+ RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48379594:+ chr13:48877880-49173572:+ chr13:48953730:+ chr13:48259983,chr13:48259979 chr13:48379455,chr13:48379448 NA NA chr13:48834119,chr13:48834115 chr13:48953591,chr13:48953584 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none BRICHOS_domain(100%)|Rb_C-terminal_domain(100%),Retinoblastoma-associated_protein_A_domain(64%),Retinoblastoma-associated_protein_B_domain(100%) BRICHOS(100%)|7tm_1(100%),BACK(100%),BTB(100%),RB_A(86%),RB_B(100%),RCC1(100%),RCC1_2(100%),Rb_C(100%) 62 31 46 174 117 ENST00000647800.2 ENST00000267163.6 downstream upstream duplicates(12),mismappers(6),mismatches(3) CCTCTGAACACTTCCATTGTTATGCCACCCAGAAACCTACTGGAGTTACTTATTAACATCAAG___GCTGGAACCTATTTGCCTCAGTCCTATCTGATTCATGAGCACATGGTTATTACTGATCGCATTGAAAACATTGATCACCTGGGTTTCTTTATTTATCGACTGTGTCATGACAAGGAAACTTACAAACTGCAACGCAGAGAAACTATTAAAG|CGATACAAACTTGGAGTTCGCTTGTATTACCGAGTAATGGAATCCATGCTTAAATCA___GAAGAAGAACGATTATCCATTCAAAATTTTAG___CAAACTTCTGAATGACAACATTTTTCATATGTCTTTATTGGCGTGCGCTCTTGAGGTTGTAAT PLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIK|aiqtwsslvlpsngiha* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 1483 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 133 TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9718475:+ chr3:9745510-9771592:+ chr3:9760159:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Copine(75%) |Copine(96%) 22 29 71 173 111 ENST00000383829.7 ENST00000383832.8 downstream upstream duplicates(8),mismatches(3) CGGAGTTGAGACCCCAGGGCGCCGGCGGGACCAGGAGCGGCAGGGGTCAGCTCAGGAATCCCGGGGAGCCGGGACCAAAGCGTGGGGCGGCAGGGGGCCGGGGTGGCGAGGTCTACGGTCTCCGGAGTTGGGGCTCCCCCTTCCCGGCCCGACTTTCCCCGCCGACCTCCCCAAGTGGGGTCGGAGCCCCGGCGGGCGCCCCCGGCGATGAGCCCGGACTCGAGGTGGCCG|AACAACAATGATGAGGACCCCAACTGTGCGGGCATCGAGGGTGTGCTGGAGAGCTATTTCCAGAGCCTGCGCACAGTGCAGCTCTATGGGCCCACCTACTTTGCTCCTGTCATCAACCAAGTGGCCAG___GGCTGCAGCCAAGATCTCTGATGGCTCCCAGTACTATGTTCTGCTCATCATCACTGATGGGGTCATCTCTGACATGACGCAGACCAAGG?GGCCATCGTCAGC___GCCTCCTCATTGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATGTTTGAGG___CAATGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1484 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 134 TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9725949:+ chr3:9745510-9771592:+ chr3:9767633:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Copine(56%) |Copine(31%) 20 12 25 173 214 ENST00000383829.7 ENST00000383832.8 downstream upstream duplicates(2),mismatches(4) AGACCGGGCATCTTGGGGGCTCGCGAAACGGGCGGCGGCCGACGGAGTTGAGACCCCAGGGCGCCGGCGGGACCAGGAGCGGCAGGGGTCAGCTCAGGAATCCCGGGGAGCCGGGACCAAAGCGTGGGGCGGCAGGGGGCCGGGGTGGCGAGGTCTACGGTCTCCGGAGTTGGGGCTCCCCCTTCCCGGCCCGACTTTCCCCGCCGACCTCCCCAAGTGGGGTCGGAGCCCCGGCGGGCGCCCCCGGCGATGAGCCCGGACTCGAGGTGGCCG|GGCTGCAGCCAAGATCTCTGATGGCTCCCAGTACTATGTTCTGCTCATCATCACTGATGGGGTCATCTCTGACATGACGCAGACCAAGGAGGCCATCGTCAGC___GCCTCCTCATTGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATGTTTGAGG___CAATGGAAGAGTTGGACGGTGATGATGTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1485 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9729507:+ chr3:9745510-9771592:+ chr3:9771191:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Copine(20%) |Copine(1%) 2 1 7 173 208 ENST00000383829.7 ENST00000383832.8 downstream upstream none CCGCCGCCGCTGTCCTCGCGCTGCCTCTGGGAGCCTCCATTGTTCCAGCAGCGCCCGGTCCCGAGACCGGGCATCTTGGGGGCTCGCGAAACGGGCGGCGGCCGACGGAGTTGAGACCCCAGGGCGCCGGCGGGgCCAGGAGCGGCcGGGGTCAGCTCAGGAATCCCGGGGAGCCGGGACCAAAGCGTGGGGCGGCAGGGGGCCGGGGTGGCGAGGTCTACGGTCTCCGGAGTTGGGGCTCCCCCTTCCCGGCCCGACTTTCCCCGCCGACCTCCCCAAG...GCGGGCGCCCCCGGCGATGAGCCCGGACTCGAGGTGGCCG|TTCGTCCCATTCCGAGACTATGTTGACCGGTCGGGGAACCAGGTGTTGAGCATGGCCCGACTGGCCAAGGATGTGCTGGCCGAGATCCCGGAGCAGCTGCTGTCCTATATGCGCACCAGAGACATCCAGCCTCGGCCCCCACCCCCTGCCAACCCCAGCCCGATCCCAGCTCCAGAGCAGCCCTGAGGATTCCACATATCCAATGCCTCACAGTCTGCAAGCCTGCTCACCCACTGCTTCTGCTTTAAGCCAGAGGCACCTGGAACCCTGGACTTCACTGGGAGaGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1486 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9726665:+ chr3:9745510-9771592:+ chr3:9768349:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Copine(40%) |Copine(25%) 1 0 8 173 275 ENST00000383829.7 ENST00000383832.8 downstream upstream duplicates(1),low_entropy(1) CGCGAAACGGGCGGCGGCCGACGGAGTTGAGACCCCAGGGCGCCGGCGGGACCAGGAGCGGCAGGGGTCAGCTCAGGAATCCCGGGGAGCCGGGACCAAAGCGTGGGGCGGCAGGGGGCCGGGGTGGCGAGGTCTACGGTCTCCGGAGTTGGGGCTCCCCCTTCCCGGCCCGACTTTCCCCGCCGACCTCCCCAAGTGGGGTCGGAGCCCCGGCGGGCGCCCCCGGCGATGAGCCCGGACTCGAGGTGGCCG|GCCTCCTCATTGCCCATGTCTATCATTATCGTCGGTGTAGGACCAGCCATGTTTGAGG___CAATGGAAGAGTTGGACGGTGATGATGTGCGCGTGTCCTCTAGGGGACGCTACGCAGAGCGGGACATCGTTCAG___TTCGTCCCATTCCGAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1491 IFIT3::RNLS ENSG00000119917.15::ENSG00000184719.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IFIT3 ENSG00000119917.15 protein_coding + + chr10:89327307-89377473:+ chr10:89328078:+ chr10:91087064-91137230:+ chr10:91087835:+ RNLS ENSG00000184719.13 protein_coding - + chr10:88273864-88584530:- chr10:88569393:+ chr10:90033621-90344287:- chr10:90329150:+ chr10:89332582,chr10:89332573 chr10:88513891,chr10:88513879 NA NA chr10:91092339,chr10:91092330 chr10:90273648,chr10:90273636 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none Abhydro_lipase(54%)| 24 52 1 1395 212 ENST00000679781.1 unknown downstream upstream duplicates(12),mismatches(2) ACAGGAAGACTTCTGAAGAACAAATCAGCCTGGTCACCAGCTTTTCGGAACAGCAGAGACACAGAGGGCAGTCATGAG|GGCATATAGATATTAGATTGGACTTCCCAGACACACTGGATGAAGGAGAGAGACAGCAGCTGGAGTACCAAAAAGGATGTCAATTCACATTCCTGGCATGATTCAGGACACCCTTCTTACCTGGT Mr|ayry* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1492 DHX36::KCNAB1 ENSG00000174953.14::ENSG00000169282.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 135 TRUE 239 TRUE 90 DHX36 ENSG00000174953.14 protein_coding - - chr3:154272546-154324487:- chr3:154324174:- chr3:153990335-154042276:- chr3:154041963:- KCNAB1 ENSG00000169282.18 protein_coding + + chr3:156037701-156539138:+ chr3:156531409:+ chr3:155755490-156256927:+ chr3:156249198:+ chr3:154319265,chr3:154319284 chr3:156528762,chr3:156528743 NA NA chr3:154037054,chr3:154037073 chr3:156246551,chr3:156246532 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Aldo/keto_reductase_family(15%) |Aldo_ket_red(4%) 14 45 6 358 153 ENST00000496811.6 ENST00000490337.6 upstream upstream duplicates(5),mismatches(5) CCGGCATCCCGGGCACCTGAAAGGCCGCGAAATCGGCATGTGGTACGCGAAAAAACAGGGGCAGAAGAACAAGGAAGCGGAGAGGCAAGAG|CGTGGTGCCTGAGAAATGAAGGTGTGAGTTCTGTGCTCCTGGGATCATCCACTCCTGAACAACTCATTGAAAACCTTGGTGCCATTCAG___GTTCTCCCAAAGATGACATCACATGTGGTAAATGAGATTGATAACATACTGCGCAACAAGCCCTACAGCAAGAAGGACTATAGATCATAAGGCAATGCATGAACCAC RHPGHLKGREIGMWYAKKQGQKNKEAERQE|rga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1493 DHX36::KCNAB1 ENSG00000174953.14::ENSG00000169282.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 239 TRUE 90 DHX36 ENSG00000174953.14 protein_coding - - chr3:154272546-154324487:- chr3:154324174:- chr3:153990335-154042276:- chr3:154041963:- KCNAB1 ENSG00000169282.18 protein_coding + + chr3:156037701-156539138:+ chr3:156536658:+ chr3:155755490-156256927:+ chr3:156254447:+ chr3:154319265,chr3:154319284 chr3:156528762,chr3:156528743 NA NA chr3:154037054,chr3:154037073 chr3:156246551,chr3:156246532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Aldo/keto_reductase_family(5%) |Aldo_ket_red(0%) 1 1 2 358 159 ENST00000496811.6 ENST00000490337.6 upstream upstream duplicates(1) CAGGGGCCGGCATCCCGGGCACCTGAAAGGCCGCGAAATCGGCATGTGGTACGCGAAAAAACAGGGGCAGAAGAACAAGGAAGCGGAGAGGCAAGAG|GTTCTCCCAAAGATGACATCACATGTGGTAAATGAGATTGATAACATACTGCGCAACAAGCCCTACAGCAAGAAGGACTATAGATCATAAGGCAATGCATGAACCACAGAAGCTGCATGGTTAAAATAGCGGCCTGTGCCCAGTACAGAAAGGTGTTACTAACCAGTCTTTTGAATCACTTAGCA RGRHPGHLKGREIGMWYAKKQGQKNKEAERQE|VLPKMTSHVVNEIDNILRNKPYSKKDYRS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1494 C21orf91::PARD3 ENSG00000154642.11::ENSG00000148498.17 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C21orf91 ENSG00000154642.11 protein_coding - - chr21:17788974-17819386:- chr21:17818192:- chr21:19161291-19191703:- chr21:19190509:- PARD3 ENSG00000148498.17 protein_coding - + chr10:34109560-34815325:- chr10:34477887:+ chr10:34398488-35104253:- chr10:34766815:+ chr21:17803088,chr21:17803090 chr10:34477358,chr10:34477356 NA NA chr21:19175405,chr21:19175407 chr10:34766286,chr10:34766284 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none EURL_protein(14%)| EURL(0%)| 28 14 17 329 38 ENST00000284881.9 unknown upstream upstream duplicates(3),mismappers(2),mismatches(4) CACGGAACGGCGGTGGTGGCCCGCGGAGCCGGACG___GGGCACTATGAACGAAGAGGAGCAGTTTGTAAACATTGATTTGAATGATGACAACATTTGCAGTGTTTGTAAACTGGGAACAGACAAAGAAACACTCTCCTTCTGCCACATTTGTTTTGAGCTAAATATTGAGG|GGCAATCATACATTTCCTAAAGAGACATCTAACCATGGGAAGAACCAAGTTATTATCACATGCTGTGGGGATACAAACCTGTCATCACGATTGCAAAACCAACCTTCAGATATGTGTTACTCCTTTTCATAAAG___GGTTTTACTTTGTCACCCAGGCTGGAGAGCAGTGTCACGATCGTAGATCACTGCATCCTTGAACTCCC MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIE|gqsyis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1495 PARD3::C21orf91 ENSG00000148498.17::ENSG00000154642.11 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34516979:- chr10:34398488-35104253:- chr10:34805907:- C21orf91 ENSG00000154642.11 protein_coding - - chr21:17788974-17819386:- chr21:17797118:- chr21:19161291-19191703:- chr21:19169435:- chr10:34477356,chr10:34477356,chr10:34477356,chr10:34477356,chr10:34477356,chr10:34477356,chr10:34477356,chr10:34477356 chr21:17803159,chr21:17803160,chr21:17803170,chr21:17803101,chr21:17803111,chr21:17803143,chr21:17803154,chr21:17803156 NA NA chr10:34766284,chr10:34766284,chr10:34766284,chr10:34766284,chr10:34766284,chr10:34766284,chr10:34766284,chr10:34766284 chr21:19175476,chr21:19175477,chr21:19175487,chr21:19175418,chr21:19175428,chr21:19175460,chr21:19175471,chr21:19175473 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none N-terminal_of_Par3_and_HAL_proteins(100%)|EURL_protein(85%) Par3_HAL_N_term(100%)|EURL(14%) 0 1 0 395 224 ENST00000545260.5 ENST00000284881.9 upstream downstream none GTGAAATTGAGGTCACACCTTCAGTCCTTCGAGCAA|GGGTACCAAAGTCTGATCTCTTGCACACCAAATCATTAAGGGGCCATAAAGACTGCTTTGAAAAA...AGGGTTGTCCTCGATCTAAGCTTTCAAAAAGTACTTATGAAGAAGTTAAAACCATTTTGAGTAAGAAGATAAACTGGATTGTGCAGTATGCACAAAATAAG EIEVTPSVLRA|rVPKSDLLHTKSLRGHKDCFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1496 NBEAL1::RUFY4 ENSG00000144426.19::ENSG00000188282.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 136 TRUE 240 TRUE 91 NBEAL1 ENSG00000144426.19 protein_coding + + chr2:203014608-203226378:+ chr2:203166297:+ chr2:203879331-204091101:+ chr2:204031020:+ RUFY4 ENSG00000188282.13 protein_coding + + chr2:218034960-218090584:+ chr2:218072374:+ chr2:218899683-218955307:+ chr2:218937097:+ chr2:203167157,chr2:203167153 chr2:218072070,chr2:218072063 NA NA chr2:204031880,chr2:204031876 chr2:218936793,chr2:218936786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Domain_of_unknown_function_(DUF4800)(100%),Neurobeachin/BDCP__DUF4704_alpha_solenoid_region(100%),PH_domain_associated_with_Beige/BEACH(37%)|RUN_domain(91%) DUF4704(100%),DUF4800(100%),PH_BEACH(2%)|RUN(100%) 21 15 15 53 19 ENST00000683969.1 ENST00000457754.6 downstream upstream duplicates(1),mismappers(2) AGTGATATGGTGGAGGATAAATTAGACCTTCCTGAAGAGGATATAACAGCTAGAGTAAATGT___TGATGAGAAAGAAGAACAGGATCAAAAAGAAAAATTGGTATTGATGGAAGACTGTGAACTCATTACAATAATTGATGTAATTCCTGGCAGATTAGAAATCACTACTCAACACATTTACTTCTATGATGGCAGCATTGAAAAAGAAGATG|TTTGACCAGAAAGAGCAGAAGAGCTTCCTGGGGCCTCGGAAGGATTACTGGGACTTTCTCTGCACTGCCCTACGACGGCAGCGGGGAAACATGGAGCCAATCCACTTTGTCCGTTCCCAGGACAAG___GGAATGGTATGGACCCCGGAGCCCTCTGCTCTGCCCAGAACGCCAAGAAGACATCCTGG SDMVEDKLDLPEEDITARVNVDEKEEQDQKEKLVLMEDCELITIIDVIPGRLEITTQHIYFYDGSIEKED|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1497 NBEAL1::RUFY4 ENSG00000144426.19::ENSG00000188282.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 240 TRUE 91 NBEAL1 ENSG00000144426.19 protein_coding + + chr2:203014608-203226378:+ chr2:203166297:+ chr2:203879331-204091101:+ chr2:204031020:+ RUFY4 ENSG00000188282.13 protein_coding + + chr2:218034960-218090584:+ chr2:218073243:+ chr2:218899683-218955307:+ chr2:218937966:+ chr2:203167157,chr2:203167153 chr2:218072070,chr2:218072063 NA NA chr2:204031880,chr2:204031876 chr2:218936793,chr2:218936786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Domain_of_unknown_function_(DUF4800)(100%),Neurobeachin/BDCP__DUF4704_alpha_solenoid_region(100%),PH_domain_associated_with_Beige/BEACH(37%)|RUN_domain(28%) DUF4704(100%),DUF4800(100%),PH_BEACH(2%)|RUN(10%) 2 0 6 53 48 ENST00000683969.1 ENST00000457754.6 downstream upstream none TTCCTGAAGAGGATATAACAGCTAGAGTAAATGT___TGATGAGAAAGAAGAACAGGATCAAAAAGAAAAATTGGTATTGATGGAAGACTGTGAACTCATTACAATAATTGATGTAATTCCTGGCAGATTAGAAATCACTACTCAACACATTTACTTCTATGATGGCAGCATTGAAAAAGAAGATG|GGAATGGTATGGACCCCGGAGCCCTCTGCTCTGCCCAGAACGCCAAGAAGACATCCTGGACTCTCTCTATGCTCTCAATGGGGTGGCCTTCGAGTTGGACCTCCAGCAGCCAGACCTGGATGGAGCCTGGCCCATGTTCTCAGA___GTCACGCTGCTCCAGTTCCACCCAAACCCAGGGAAGGAGACCCAGAAAAAACAAAGATGCCCCAAAGAAG___ATCCCAGCCGCATATGGAG PEEDITARVNVDEKEEQDQKEKLVLMEDCELITIIDVIPGRLEITTQHIYFYDGSIEKED|gngmdpgalcsaqnakktswtlsmlsmgwpsswtsssqtwmepgpcsqshaapvppkpregdpektkmpqrrsqphm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1498 CUX1::ZFHX3 ENSG00000257923.12::ENSG00000140836.17 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101916225:+ chr7:101459184-101927250:+ chr7:101559505:+ ZFHX3 ENSG00000140836.17 protein_coding - + chr16:72782885-73891871:- chr16:73540718:+ chr16:72816784-73925770:- chr16:73574617:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 16 14 10 611 49 ENST00000437600.9 unknown downstream upstream duplicates(6),mismatches(1) CTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG___AGAGAACTCGATGCCACCGCAACGGTATTGGCGAACCGGCAGGATGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG|ATGAGATACTGTGCTCGGTGAACATACTCCTCAATGGCAACCAAGACTGTGAACACCATATTTGCCAATTCCAGAGTCACTCTCACGCAAAGCCATCAACCTGCTCACTGTCAGAGGCCTCTGAGGACATCAGTGAGGGCTGGGCTGAGCCTAGGCCCACAGAGAGATGCAG MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPE|mrycar* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 1499 MSI2::SCPEP1 ENSG00000153944.12::ENSG00000121064.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 137 TRUE 241 TRUE 92 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ SCPEP1 ENSG00000121064.13 protein_coding + + chr17:56978129-57006768:+ chr17:57000855:+ chr17:55055490-55084129:+ chr17:55078216:+ chr17:57288239,chr17:57288238 chr17:57000078,chr17:57000068 NA NA chr17:55365600,chr17:55365599 chr17:55077439,chr17:55077429 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|Serine_carboxypeptidase(28%) RRM_1(2%)|Peptidase_S10(21%) 9 23 4 225 1153 ENST00000284073.7 ENST00000262288.8 downstream upstream mismatches(1),multimappers(1) CGTCACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|GCCAGGCTACCAACGTCTTTGTGAACATGGAGGAGGACTTCATGAAGCCAGTCATTAGCATTGTGGACGAGTTGCTGGAGGCAGGGATCAACGTGACGGTGTATAATGGACAGCTGGATCTCATCGTAGATACCATGG___GTCAGGAGGCCTGGGTGCGGAAACTGAAGTGGCCAGAACTGC VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK|arlptsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1500 MSI2::SCPEP1 ENSG00000153944.12::ENSG00000121064.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 241 TRUE 92 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57263569:+ chr17:55333212-55762050:+ chr17:55340930:+ SCPEP1 ENSG00000121064.13 protein_coding + + chr17:56978129-57006768:+ chr17:57000855:+ chr17:55055490-55084129:+ chr17:55078216:+ chr17:57288239,chr17:57288238 chr17:57000078,chr17:57000068 NA NA chr17:55365600,chr17:55365599 chr17:55077439,chr17:55077429 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|Serine_carboxypeptidase(28%) RRM_1(2%)|Peptidase_S10(21%) 1 0 4 2 1153 ENST00000676073.1 ENST00000262288.8 downstream upstream mismatches(1),multimappers(1) ATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG___AGGGCTTCCCAGAGTTAGCAGTATTTCCTGGGTTTGGAGGAATTGCTGTTTCTTCCATAAGTGTGAATCTTCAAATTTCCAG|GCCAGGCTACCAACGTCTTTGTGAACATGGAGGAGGACTTCATGAAGCCAGTCATTAGCATTGTGGACGAGTTGCTGGAGGCAGGGATCAACGTGACGGTGTATAATGGACAGCTGGATCTCATCGTAGATACCATGG___GTCAGGAGGCCTGGGTGCGGAAACTGAAGTGGCCAaAACTGCCTAAATTCAGTCAGCTGAAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1501 PARD3::ENSG00000244676 ENSG00000148498.17::ENSG00000244676.5 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34516979:- chr10:34398488-35104253:- chr10:34805907:- ENSG00000244676 ENSG00000244676.5 lncRNA + + chr21:17793488-17810845:+ chr21:17810495:+ chr21:19165805-19183162:+ chr21:19182812:+ chr10:34477356,chr10:34477358 chr21:17803090,chr21:17803088 NA NA chr10:34766284,chr10:34766286 chr21:19175407,chr21:19175405 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none N-terminal_of_Par3_and_HAL_proteins(100%)| Par3_HAL_N_term(100%)| 8 9 15 395 26 ENST00000545260.5 ENST00000428689.5 upstream upstream duplicates(1),mismatches(1) AAACTACTGGATACAGGTGCATCGCTTGGAACATGGAGATGGAGGAATACTAGACCTTGATGACATTCTTTGTGATGTAGCAGACGATAAAGACAGA___CTGGTAGCAGTGTTTGATGAGCAGGATCCACATCACGGAGGTGATGGCACCAGTGCCAGTTCCACGGGTACCCAGAGCCCAGAGATATTTGGTAGTGAGCTTGGCACCAACAATGTCTCAGCCTTTCAGCCTTACCAAGCAACAAGTGAAATTGAGGTCACACCTTCAGTCCTTCGAGCAA|GTTGTCCCAGCATCAGCTATTGAGGCTGATAAGCAAAAGGGAGCTGCTATGCAATTTCAGGATTGGTGCCGACATCTTCACCTGTGCTCACACTGTCTGCTTCCACTCACTCATAATCCTGTTCTCTCTCTTGAAAGAAAGGCTAATTAGGATAAATATGCTAGTCTGCCTTACTTGGATGGTGGAAGAACAGAGAGCAGTGTTAGAATCACTGTTTCATTACCAGCTGACATCT NYWIQVHRLEHGDGGILDLDDILCDVADDKDRLVAVFDEQDPHHGGDGTSASSTGTQSPEIFGSELGTNNVSAFQPYQATSEIEVTPSVLRA|scpsisy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1502 EVPL::SRP68 ENSG00000167880.8::ENSG00000167881.15 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 138 FALSE NA FALSE NA EVPL ENSG00000167880.8 protein_coding - - chr17:76004502-76027306:- chr17:76027101:- chr17:74000583-74023387:- chr17:74023182:- SRP68 ENSG00000167881.15 protein_coding - - chr17:76038775-76072517:- chr17:76050526:- chr17:74034856-74068598:- chr17:74046607:- chr17:76024419,chr17:76024426,chr17:76024423 chr17:76054837,chr17:76054838,chr17:76054838 NA NA chr17:74020500,chr17:74020507,chr17:74020504 chr17:74050918,chr17:74050919,chr17:74050919 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |RNA-binding_signal_recognition_particle_68(51%) |SRP68(35%) 9 7 9 193 418 ENST00000301607.8 ENST00000307877.7 upstream downstream mismatches(1) CAGCCAGTGAGGACGCCCGCTGCCTCCCACCTGCCCTCCTGCCGTCTTTCGCCAGCCAAGCCCAGCCTGAGCCAGCACTTGCCTTTACGACCATGTTCAAGGGGCTGAGCAAAGGCTCCCAGGGGAAGGGGTCCCCCAAGGGCTCCCCCGCCAAGGGGTCCCCCAAAGGCTCCCCCAGCAGGCACAGCCG|GCTGAAAGCGAAGAAACTAAGGAGCGCCTGTTTGAATCAATGCTCAGCGAGTGTCGGGACGCCATCCAGGTGGTTCGGGAGGAGCTCAAGCCAGATCAG___AAACAGAGAGATTATATCCTTGAAGGAGAGCCAGGGAAGGTGTCTAATCTTCAATACTTGCATAG___CTACCTGACTTACATCAAGCTATCAACGGCAATCAAGC MFKGLSKGSQGKGSPKGSPAKGSPKGSPSRHSr|lkakklrsaclnqcsasvgtpsrwfgrsssqirnreiislkesqgrclifntciat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma OVARY,CERVIX no_match 74019373,74023182 FALSE,TRUE 74041467,74063411 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1503 ZFAND3::BTBD9 ENSG00000156639.12::ENSG00000183826.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:38082457:+ chr6:37787503-38122400:+ chr6:38050233:+ BTBD9 ENSG00000183826.19 protein_coding - + chr6:38168451-38640148:- chr6:38478458:+ chr6:38136227-38607924:- chr6:38446234:+ chr6:38088369,chr6:38088367 chr6:38465780,chr6:38465775 NA NA chr6:38056145,chr6:38056143 chr6:38433556,chr6:38433551 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none A20-like_zinc_finger(100%)| zf-A20(100%)| 7 10 7 336 28 ENST00000287218.9 unknown downstream upstream duplicates(1),mismatches(1) TGTAACTTCACCGAGTAAAGAGGAGT___GTGGGCCATGCACAGACACAGCTCATGTCTCATTAATCACACCAACAAAAAGATCCTGTGGTACAG|AGAATTACATGGCCGGCAGTGAGGATGGTGTCAAATCTCATCAGTCATCTACAACCACTTTCTCTGACCCTTTCTGCATCATTGAATTTGACTCCCTTTCTTCCCATACTCTCCTTgGAGGACCTAAGAGGAAATGTaCATGGGCAGACAAAACAGAAAACTAAAGGAGGGAAGATAAGTGGGTTCTTGGCTTCCGGAAGGATTCTGACCTACTTCACTTGCCTTCAAATTCTGTGTGAAT VTSPSKEECGPCTDTAHVSLITPTKRSCGT|enymagsedgvkshqsstttfsdpfciiefdslsshtllggpkrkctwadkten* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1504 ROCK1::STS ENSG00000067900.9::ENSG00000101846.9 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ROCK1 ENSG00000067900.9 protein_coding - - chr18:20944612-21111813:- chr18:21070532:- chr18:18524573-18691774:- chr18:18650493:- STS ENSG00000101846.9 protein_coding + - chrX:7147237-7804358:+ chrX:7521147:- chrX:7065278-7772399:+ chrX:7439188:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 4 17 147 22 ENST00000635540.2 unknown upstream downstream duplicates(3),mismatches(1) GTTTTGAGACTCGATTTGAAAAAATGGACAACCTGCTGCGGGATCCCAAATCGGAAGTGAATTCGGATTGTTTGCTG___GATGGATTGGATGCTTTGGTATATGATTTGGATTTTCCTGCCTTAAGAAAAAACAAAAATATTGACAACTTTTTAAGCAGAT|TCTTCCTCCGTCTTGCCCTTCTGCCTTCCACCATGGGATGACACAGAATGAAGGTCCTTGCCAGATGCTGGTGCCTTGCTCTTGAAGTCCCCAGTCTCCAGAACCACGAGCCACATTAGCTTCTATTGTTTATAAATTACCCAGTCTGTGGTATTCTGTTATAGCAACACAAAAC FETRFEKMDNLLRDPKSEVNSDCLLDGLDALVYDLDFPALRKNKNIDNFLSR|fflrlallpstmg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 1 AGC DMPK ROCK Q13464 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho associated coiled-coil-containing protein kinase 1 2 pancreatic ductal adenocarcinoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 1505 IQGAP3::BCAN-AS2 ENSG00000183856.11::ENSG00000229953.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IQGAP3 ENSG00000183856.11 protein_coding - - chr1:156525405-156572604:- chr1:156560934:- chr1:156495197-156542396:- chr1:156530726:- BCAN-AS2 ENSG00000229953.1 lncRNA - - chr1:156646507-156661424:- chr1:156647154:- chr1:156616299-156631216:- chr1:156616946:- chr1:156559496,chr1:156559502 chr1:156654971,chr1:156654974 NA NA chr1:156529288,chr1:156529294 chr1:156624763,chr1:156624766 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Calponin_homology_(CH)_domain(100%)| CH(100%)| 6 8 4 291 145 ENST00000491900.1 ENST00000448869.1 upstream downstream none CTGGAAAGACAGAGCCCTGAAGCCTTGCTCAAGGCCCTTCAAGACCCTGCCCTGGCCCTGCGAGGGGTGAGGAGAGACTTTGCTGACTGGTACCTGGAGCAGCTGAACTCAGACAGAGAGCAGAAGGCACAG___GAGCTGGGCCTGGTGGAGCTTCTGGAAAAGGAGGAAGTCCAGGCTGGTGTGGCTGCAGCCAACACAAAGGGTGATCAGGAACAAGCCA|CGTCGCTGCTGTCATCGATGCCGTGCTGGACCTCACAGCGATAGATACCTGAGTCGTTGGGGCGCAGCTCGCTCAGCGCCAGGGAGACGTCGGTGAGCGACGCTGGGTACGCAGGCAGTGCCACGCGGAACCGGTAGGCCTCGTTCACCTTGACGCGCACTCCCCGCGCCACCAGCACCTCTGCCTCCCGGCCCCGGGACAGGAAAGTCCACTTGACCCGCGGAGAGCCCAGCACAGCCCGGCGGCTCGGCGGTGGCCGCAGGTAGTGGACGTGGCAAGGGATGGTGAGGGCGCCGCCGAGCACGCCCTGCAGTGGCGCGTCGCCCGCGATGCGCACGCGAAAAGCGCGGTCCTCTGTGAACGGGTGGAGCCGGCTGGAACTTAACGCTGTCGACCCTCAGAGTCCCACCCGGTGGCCTCCAAGCCCCGCTCCAGGATCCCTCCTTCCG...AAGCTGCAGGAGCCTGGGCCAGGACCAGGGCTGCCAGCAGGGGCAGGAACAGCTGGGCCATGCTGCAGGCTGACAGAGGGACATGAGAAGGAAAGATGGGGT LERQSPEALLKALQDPALALRGVRRDFADWYLEQLNSDREQKAQELGLVELLEKEEVQAGVAAANTKGDQEQA|tsllssmpcwtsqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1506 TBCB::WDR62 ENSG00000105254.12::ENSG00000075702.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 139 TRUE 242 TRUE 93 TBCB ENSG00000105254.12 protein_coding + + chr19:36114289-36125947:+ chr19:36121718:+ chr19:36605191-36616849:+ chr19:36612620:+ WDR62 ENSG00000075702.19 protein_coding + + chr19:36054649-36105108:+ chr19:36099399:+ chr19:36545551-36596010:+ chr19:36590301:+ chr19:36124562,chr19:36124562,chr19:36124560 chr19:36098168,chr19:36097650,chr19:36098163 NA NA chr19:36615464,chr19:36615464,chr19:36615462 chr19:36589070,chr19:36588552,chr19:36589065 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none CAP-Gly_domain(17%),Ubiquitin-like_domain(97%)| CAP_GLY(1%),RNA_POL_M_15KD(100%),Ubiquitin_2(62%)| 6 7 5 365 63 ENST00000221855.8 ENST00000401500.7 downstream upstream none CGACAAGTTCTACAGCAAGCTGGATCAAGAGGATGCGCTCCTGGGCTCCTACCCTGTAGATGACGGCTGCCGCATCCAC___GTCATTGACCACAGTGGCGCCCG...GTGGAGAAGTACACGATCTCACAAGAAGCCTACGACCAGAGGCAAG___ACACGGTCCGCTCTTTCCTGAAGCGCAGCAAGCTCGGCCGGTACAACGAGGAGGAGCGGGCTCAGCAGGAGGCCGAGGCCGCCCAGCGCCTGGCCGAGGAGAAGGCCCAGGCCAGCTCCATCCCCGTGGGCAGCCGCTGTGAGGTGCGGGCGGCGGGACAATCCCCTCGCCGGGGCACCGTCATGTATGTAG|CTAGGGGACGATGATGTGGCAGATGGCTTGGCCTTCCACGCCAAGCGCAGCTACCAGCCCCACGGCCGCTGGGCAGAGCGGGCCGGCCAAGAGCCCCTCAAGACCATCCTGGATGCCCAGGACCTGGATTGCTACTTTACCCCCATGAAGCCCGAGAGTCTGGAGAACTCCATTCTGGATTCACTGGAGCCACAGAGCC VEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYV|argr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1507 TBCB::WDR62 ENSG00000105254.12::ENSG00000075702.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 242 TRUE 93 TBCB ENSG00000105254.12 protein_coding + + chr19:36114289-36125947:+ chr19:36122173:+ chr19:36605191-36616849:+ chr19:36613075:+ WDR62 ENSG00000075702.19 protein_coding + + chr19:36054649-36105108:+ chr19:36099399:+ chr19:36545551-36596010:+ chr19:36590301:+ chr19:36124562,chr19:36124562,chr19:36124560 chr19:36098168,chr19:36097650,chr19:36098163 NA NA chr19:36615464,chr19:36615464,chr19:36615462 chr19:36589070,chr19:36588552,chr19:36589065 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none CAP-Gly_domain(17%),Ubiquitin-like_domain(97%)| CAP_GLY(12%),RNA_POL_M_15KD(100%),Ubiquitin_2(66%)| 0 1 6 36 63 ENST00000468156.1 ENST00000401500.7 downstream upstream none GAAGAGTTCCCGCCAGAAGGAGTAGCGGGTGCAG|CTAGGGGACGATGATGTGGCAGATGGCTTGGCCTTCCACGCCAAGCGCAGCTACCAGCCCCACGGCCGCTGGGCAGAGCGGGCCGGCCAAGAGCCCCTCAAGACCATCCTGGATGCCCAGGACCTGGATTGCTACTTTACCCCCATGAAGCCCGAGAGTCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1508 TBCB::WDR62 ENSG00000105254.12::ENSG00000075702.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 242 TRUE 93 TBCB ENSG00000105254.12 protein_coding + + chr19:36114289-36125947:+ chr19:36121669:+ chr19:36605191-36616849:+ chr19:36612571:+ WDR62 ENSG00000075702.19 protein_coding + + chr19:36054649-36105108:+ chr19:36099399:+ chr19:36545551-36596010:+ chr19:36590301:+ chr19:36124562,chr19:36124562,chr19:36124560 chr19:36098168,chr19:36097650,chr19:36098163 NA NA chr19:36615464,chr19:36615464,chr19:36615462 chr19:36589070,chr19:36588552,chr19:36589065 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none CAP-Gly_domain(4%),Ubiquitin-like_domain(97%)| CAP_GLY(0%),RNA_POL_M_15KD(100%),Ubiquitin_2(61%)| 1 0 3 395 63 ENST00000589996.5 ENST00000401500.7 downstream upstream none CAAGAAGCCTACGACCAGAGGCAAG___ACACGGTCCGCTCTTTCCTGAAGCGCAGCAAGCTCGGCCGGTACAACGAGGAGGAGCGGGCTCAGCAGGAGGCCGAGGCCGCCCAGCGCCTGGCCGAGGAGAAGGCCCAGGCCAGCTCCATCCCCGTGGGCAGCCGCTGTGAG|CTAGGGGACGATGATGTGGCAGATGGCTTGGCCTTCCACGCCAAGCGCAGCTACCAGCCCCACGGCCGCTGGGCAGAGCGGGCCGGCCAAGAGCCCCTCAAGACCATCCTGGATGCCCAGGACCTGGATTGCTACTTTACCCCCATGAAGCCCGAGAGTCTGGAG QEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCE|LGDDDVADGLAFHAKRSYQPHGRWAERAGQEPLKTILDAQDLDCYFTPMKPESL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1510 LINC01036::CHODL-AS1 ENSG00000230426.5::ENSG00000231755.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 243 TRUE 94 LINC01036 ENSG00000230426.5 lncRNA + + chr1:187070700-187687674:+ chr1:187073024:+ chr1:187039832-187656806:+ chr1:187042156:+ CHODL-AS1 ENSG00000231755.1 lncRNA - - chr21:17835016-17885608:- chr21:17840653:- chr21:19207333-19257925:- chr21:19212970:- chr1:187286362,chr1:187286362,chr1:187286362 chr21:17850608,chr21:17850612,chr21:17850571 NA NA chr1:187255494,chr1:187255494,chr1:187255494 chr21:19222925,chr21:19222929,chr21:19222888 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 5 4 7 81 201 ENST00000643891.1 ENST00000447175.1 downstream downstream duplicates(2),inconsistently_clipped(1),low_entropy(1) CGGGGAGTGTTACAGCTCTTAAGGTGGCACATCTGGAGTTTGTTCCTTCTGACGTTCAGATGTGTTCGGAGTTTCTTCCTTCTGGTGGGTTCGTGATCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCAGGGGGAGTGTTACAGCTCTTAAGGTGGCGCGTCTGGAGTTTCTTCCTTCTGGTGGGTTCGTGATCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCACG|TTTCTTTCTTTAGGTCAACATATCTGGTGTAGCTGTCAGGATTCAGAGCAACCTCCTCACACCCTGGACCACCTAGTGATCCCTCCTGGACTCAGCACTCAGCACCAGCACAAACCTACTGTGTTTCTCTGTCTCCACATCTTTCCCTGAGTACAAAAG___GTAGCCCTGCGTGAGTAGGCATCTTCCATCATCAGAGATCTCCAACTGAAGCTGACCTGCAGCCAGTCACCTGGTTCTTCAGACCAGGACAAGAAATTGAAACTCAGTTTAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1511 LINC01036::CHODL-AS1 ENSG00000230426.5::ENSG00000231755.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 243 TRUE 94 LINC01036 ENSG00000230426.5 lncRNA + + chr1:187070700-187687674:+ chr1:187092946:+ chr1:187039832-187656806:+ chr1:187062078:+ CHODL-AS1 ENSG00000231755.1 lncRNA - - chr21:17835016-17885608:- chr21:17840653:- chr21:19207333-19257925:- chr21:19212970:- chr1:187286362,chr1:187286362,chr1:187286362 chr21:17850608,chr21:17850612,chr21:17850571 NA NA chr1:187255494,chr1:187255494,chr1:187255494 chr21:19222925,chr21:19222929,chr21:19222888 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 2 1 10 10 201 ENST00000609113.2 ENST00000447175.1 downstream downstream mismatches(1) GTGATCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCACG___GATCTCGCTGTGTTGCCCGGGCTGGTCTCAAACTTCTGGACACAAACAATCCTCCACATTGGCCTCCCAAAATGCTGGAATTACAGGTGTGAGCCACTGGACCAGCAGGACTCTAAATTTTG|TTTCTTTCTTTAGGTCAACATATCTGGTGTAGCTGTCAGGATTCAGAGCAACCTCCTCACACCCTGGACCACCTAGTGATCCCTCCTGGACTCAGCACTCAGCACCAGCACAAACCTACTGTGTTTCTCTGTCTCCACATCTTTCCCTGAGTACAAAAG___GTAGCCCTGCGTGAGTAGGCATCTTCCATCATCAGAGATCTCCAACTGAAGCTGACCTGCAGCCAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1512 LINC01036::CHODL-AS1 ENSG00000230426.5::ENSG00000231755.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 243 TRUE 94 LINC01036 ENSG00000230426.5 lncRNA + + chr1:187070700-187687674:+ chr1:187255122:+ chr1:187039832-187656806:+ chr1:187224254:+ CHODL-AS1 ENSG00000231755.1 lncRNA - - chr21:17835016-17885608:- chr21:17840653:- chr21:19207333-19257925:- chr21:19212970:- chr1:187286362,chr1:187286362,chr1:187286362 chr21:17850608,chr21:17850612,chr21:17850571 NA NA chr1:187255494,chr1:187255494,chr1:187255494 chr21:19222925,chr21:19222929,chr21:19222888 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 1 0 10 2 201 ENST00000642737.1 ENST00000447175.1 downstream downstream none CAGACCTTCACG___GCAAAACAATCTACTAATGAAATCAGAAGGATTTCCAGTGATGCTGCCCACATTTCTGTGAAAAAGAGGAAGTTTTTTAAGTCAGATGG...TCTCTCATCAATGTG|TTTCTTTCTTTAGGTCAACATATCTGGTGTAGCTGTCAGGATTCAGAGCAACCTCCTCACACCCTGGACCACCTAGTGATCCCTCCTGGACTCAGCACTCAGCACCAGCACAAACCTACTGTGTTTCTCTGTCTCCACATCTTTCCCTGAGTACAAAAG___GTAGCCCTGCGTGAGTAGGCATCTTCCATCATCAGAGATCTCCAACTGAAGCTGACCTGCAGCCAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1513 CUX1::LINC01568 ENSG00000257923.12::ENSG00000258779.8 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101916225:+ chr7:101459184-101927250:+ chr7:101559505:+ LINC01568 ENSG00000258779.8 lncRNA + + chr16:73386771-73504954:+ chr16:73504241:+ chr16:73420670-73538853:+ chr16:73538140:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 6 3 5 611 13 ENST00000437600.9 ENST00000641790.1 downstream upstream duplicates(1) TCTCAATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG___AGAGAACTCGATGCCACCGCAACGGTATTGGCGAACCGGCAGGATGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG|CTATAGAATAAACAGTGGCTGGAGGATGATACACCAAAGAAGGAAAGAAACAAGTGAACTCAAATCAAAGAATTCACATCAGCTTTTTTGAAAGGGGAAAACCAAAAACGTCAATTGCAAGCCTCAACCCCCTTCTTCTTCCCCAAACTGTTTTTCCTTTTGG MAANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPE|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 1516 EML4::PKDCC ENSG00000143924.19::ENSG00000162878.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42169636:+ chr2:42396493-42559688:+ chr2:42396776:+ PKDCC ENSG00000162878.13 protein_coding + + chr2:42048021-42058517:+ chr2:42055286:+ chr2:42275161-42285657:+ chr2:42282426:+ chr2:42177885,chr2:42177886 chr2:42055228,chr2:42055226 NA NA chr2:42405025,chr2:42405026 chr2:42282368,chr2:42282366 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 5 2 3 96 13 ENST00000318522.10 ENST00000294964.6 downstream upstream none GGCTGAGCGGCGCGGCTCTCAACGTGACGGGGAAGTGGTTCGGGCGGCCGCGGCTTACTACCCCAGGGCGAACGGACGGACGACGGAGGCGGGAGCCGGTAGCCGAGCCGGGCGACCTAGAGAACGAGCGGGTCAGGCTCAGCGTCGGCCACTCTGTCGGTCCGCTGAATGAAGTGCCCGCCCCTCTAAGCCCGGAGCCCGGCGCTTTCCCCGCAAGATGGACGGTTTCGCCGGCAGTCTCG|GAGAGCTCGCCTGGGGGGTGGACGAGACCCTGGCCCAGCTGGAGAAGGTGCTGCACCTGTACCGGAGCGGGCAGTATCTGCAGAACTCCACGGCAAGCAGCAGTACCG___AGTACCAGTGTATCCCAGACAGCACCATCCCCCAGGAAGACTACCGCTGCTGGCCATCCTACCACCACGGaAG...AAGCCCCTGCTGCTGCTGCTGCACATGCCACAGCAGGCGGTGGGGGCTGCGTGGGGACAATCCATCGTGGAGTGTTCTCTCAGCTTAGGTCTGGACAGGAG MDGFAGSL|gELAWGVDETLAQLEKVLHLYRSGQYLQNSTASSSTEYQCIPDSTIPQEDYRCWPSYHHG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase domain-containing protein Other SgK493 Q504Y2 TRUE Uterus_corpus,Adrenal no_match TRUE Uterine Corpus Endometrial Carcinoma,Pheochromocytoma and Paraganglioma UTERUS,ADRENAL_GLAND no_match 42553392,42396776 FALSE,TRUE 42280379,42280379 FALSE,FALSE YES,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1517 IGHMBP2::SPTBN2 ENSG00000132740.10::ENSG00000173898.15 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGHMBP2 ENSG00000132740.10 protein_coding + + chr11:68903863-68940602:+ chr11:68917883:+ chr11:68671331-68708070:+ chr11:68685351:+ SPTBN2 ENSG00000173898.15 protein_coding - - chr11:66682497-66744670:- chr11:66721262:- chr11:66449968-66512141:- chr11:66488733:- chr11:68923065 chr11:66728574 NA NA chr11:68690533 chr11:66496045 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none AAA_domain(39%)|Calponin_homology_(CH)_domain(100%),Pleckstrin_homology_domain(100%),Spectrin_repeat(100%) AAA_11(35%),AAA_19(35%),AAA_30(100%),ResIII(35%)|CAMSAP_CH(100%),CH(100%),PH(100%),PH_9(100%),Spectrin(100%) 2 5 3 137 225 ENST00000255078.8 ENST00000611817.5 downstream downstream duplicates(1) CTGGAGTCCATTCAGCAGCACTCCCTGGATGCGGTTTTAGCGCGGAGCGACAGTGCCCAGATTGTTGCAGATATCAGGAAGGACATCGACCAGGTCTTT___GTGAAAAACAAAAAGACCCAGGATAAGAGAGAGAAAAGTAATTTTCGAAATGAAATTAAGCTGTTAAGAAAAGAACTGAAGGAGAGGGAAGAAGCAGCTATGCTCGAGAGCCTCACTTCGGCAAACGTGGTCCTTGCAACAAACACAG|GAGCAGGAAGCCGCCTACCACCATGAGCAGCACGCTGTCACCCACAGACTTTGACAGCTTGGAAATCCAGGGCCAGTACAGTGACATCAACAACCGCTGGGACCTTCCTGACTCGGACTGGGACAATGACAGCAGCTCGGCCCGCCTCTTTGAGAGGTCTCGCATTAAGGCTCTGGCAG___ATGAACGAGAAGCTGTGC LESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNT|gagsrlpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1518 MBNL1::ENSG00000289884 ENSG00000152601.18::ENSG00000289884.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152300367:+ chr3:151961617-152183569:+ chr3:152018156:+ ENSG00000289884 ENSG00000289884.1 lncRNA + + chr3:164451246-164687874:+ chr3:164563167:+ chr3:164169034-164405662:+ chr3:164280955:+ chr3:152348843,chr3:152348836 chr3:164551439,chr3:164551429 NA NA chr3:152066632,chr3:152066625 chr3:164269227,chr3:164269217 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none RNA-binding__Nab2-type_zinc_finger(45%)| zf-CCCH_2(0%)| 2 1 5 423 16 ENST00000282486.10 unknown downstream upstream duplicates(1) ATTTTCATCATCAGTTCAGCTTTTTTTTTTTGGTTGTTGCTCTTTTTTGGGGGGGTTGGGTTTGTTGGTTTCACTGAAACATTTAACTACCTGTAAAATCTAAACATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTCCAGAGGGGGACTTGCTCACGGCCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAATGGACGAGTAATCGCCTGCTTTGATTCATTGAAA|AGATCAACTGACTTCTTCGTGAGGCTGAACACTATCAAAGATTCCAAAAAGAGAAAAAG___CTTTTTATTGATATGTATGTAAAACAGAAAAGTGCACAGAAATAAATATACAGCCCAATGCATTTTCCCAAAA MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLK|rstdffvrlntikdskkrksfllicm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1519 GAN::BCO1 ENSG00000261609.8::ENSG00000135697.10 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 141 TRUE 244 TRUE 95 GAN ENSG00000261609.8 protein_coding + + chr16:81314944-81390809:+ chr16:81315280:+ chr16:81348549-81424414:+ chr16:81348885:+ BCO1 ENSG00000135697.10 protein_coding + + chr16:81238689-81291142:+ chr16:81264640:+ chr16:81272294-81324747:+ chr16:81298245:+ chr16:81322653,chr16:81322653 chr16:81262389,chr16:81262386 NA NA chr16:81356258,chr16:81356258 chr16:81295994,chr16:81295991 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BTB/POZ_domain(33%)|Retinal_pigment_epithelial_membrane_protein(70%) BTB(0%)|RPE65(50%) 0 6 2 15 23 ENST00000648994.2 ENST00000258168.7 downstream upstream duplicates(1),mismatches(1) GGGTCCGGCCGGAaGGTGTCGGGAGCCGGACCCGTCGGCAGAGGAGCGGGCGCCGCGATGGCTGAGGGCAGTGCCGTGTCTGACCCTCAGCACGCCGCGCGTCTGCTGCGAGCGCTCAGCTCTTTCCGCGAGGAGTCTCGCTTCTGCGACGCGCACCTGGTCCTCGACGGGGAGGAGATCCCGGTGCAGAAGAACATCCTGGCGGCGGCCAGCCCGTACATCAG|GTTGATTATCGTAAATACGTGGCGGTAAATCTGGCAACGTCACATCCCCATTATGATGAGGCTGGAAATGTTCTAAACATGGGCACATCCATTGTGGAAAAGGGGAAGACAAAGTATGTGATTTTTAAGATCCCTGCCACAGTACCAG___AGGGCAAGAAGCAGGGGAAGAGCCCCTGGAAGCAC MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIr|liivntwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1520 GAN::BCO1 ENSG00000261609.8::ENSG00000135697.10 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 142 TRUE 244 TRUE 95 GAN ENSG00000261609.8 protein_coding + + chr16:81314944-81390809:+ chr16:81315280:+ chr16:81348549-81424414:+ chr16:81348885:+ BCO1 ENSG00000135697.10 protein_coding + + chr16:81238689-81291142:+ chr16:81267908:+ chr16:81272294-81324747:+ chr16:81301513:+ chr16:81322653,chr16:81322653 chr16:81262389,chr16:81262386 NA NA chr16:81356258,chr16:81356258 chr16:81295994,chr16:81295991 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BTB/POZ_domain(33%)|Retinal_pigment_epithelial_membrane_protein(60%) BTB(0%)|RPE65(43%) 1 4 1 15 41 ENST00000648994.2 ENST00000258168.7 downstream upstream duplicates(1),mismatches(2) GGGTCCGGCCGGACGGTGTCGGGAGCCGGACCCGTCGGCAGAGGAGCGGGCGCCGCGATGGCTGAGGGCAGTGCCGTGTCTGACCCTCAGCA?GCCGCGCGTCTGCTGCGAGCGCTCAGCTCTTTCCGCGAGGAGTCTCGCTTCTGCGACGCGCACCTGGTCCTCGACGGGGAGGAGATCCCGGTGCAGAAGAACATCCTGGCGGCGGCCAGCCCGTACATCAG|AGGGCAAGAAGCAGGGGAAGAGCCCCTGGAAGCACACAGAGGTGTTCTGCTCCATCCCATCCCGCTCCCTGCTCTCCCCAAGCTACTACCACAGCTTTGGAGTCACCGAG...AGATGGCAACCGCATACATCCGGAGAATGAGCTGGGCCTCCTGCCTGGCTTTCCACAGGGAGGAGAAG___ACTTATATCCACATCATCGACCAAAGGACCAGGCAGCCTGTGCAGAC MAEGSAVSDPQ?AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIr|gqeageepleahrgvllhpiplpalpkllpqlwshr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1521 ZNF407::DMD ENSG00000215421.10::ENSG00000198947.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF407 ENSG00000215421.10 protein_coding + + chr18:74597870-75065671:+ chr18:74641122:+ chr18:72265106-72777627:+ chr18:72353078:+ DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:32699293:- chrX:31115794-33357726:- chrX:32717410:- chr18:74662950,chr18:74662949 chrX:32763161,chrX:32763162 NA NA chr18:72374906,chr18:72374905 chrX:32781278,chrX:32781279 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Calponin_homology_(CH)_domain(10%),EF-hand(100%),EF_hand(100%),Spectrin_repeat(100%),WW_domain(100%),Zinc_finger__ZZ_type(100%) zf-met(100%)|CH(0%),EF-hand_2(100%),EF-hand_3(100%),Spectrin(21%),WW(100%),ZZ(100%) 2 1 4 42 4 ENST00000299687.10 ENST00000357033.9 downstream downstream duplicates(1),low_entropy(1) GAGGTGAATAAGTATATAGTGGAAGACACTGAGCAAATCAACCGCGAGAGGGAGGAAAACCAGGGAAACGTCTGCAAGTATTGTGGGAAGATGTGTCGAAGCAGCAACTCGATGGCCTTCCTGGCACACATTCGCACTCACACAG___GATCAAAACCATTCAAGTGCAAGATATGCCATTTTGCAACAGCTCAGCTTGGAGATGCCAGAAACCATGTGAAAAGGCACCTTGGGATGAGGGAATACAAGTGTCATGTCTGTGG|ATGTTGATACCACCTATCCAGATAAGAAGTCCATCTTAATGTACATCACATCACTCTTCCAAGTTTTGCCTCAACAAGTGAGCATTGAAGCCATCCAGGAAGTGGAAATGTTGCCAAGGCCACCTAAAGTGACTAAAGAAGAACATTTTCAGTTAC EVNKYIVEDTEQINREREENQGNVCKYCGKMCRSSNSMAFLAHIRTHTGSKPFKCKICHFATAQLGDARNHVKRHLGMREYKCHVCg|c* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3915,hsa-mir-548f-5 chrX:32583656-32583752:-,chrX:32641474-32641559:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1523 FAM151B-DT::DHFR ENSG00000249042.6::ENSG00000228716.7 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM151B-DT ENSG00000249042.6 lncRNA - - chr5:80411231-80488095:- chr5:80485466:- chr5:79707050-79783914:- chr5:79781285:- DHFR ENSG00000228716.7 protein_coding - - chr5:80626226-80654983:- chr5:80638009:- chr5:79922045-79950802:- chr5:79933828:- chr5:80454829,chr5:80454834 chr5:80644953,chr5:80644955 NA NA chr5:79750648,chr5:79750653 chr5:79940772,chr5:79940774 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Dihydrofolate_reductase(57%) |DHFR_1(35%) 2 3 2 175 285 ENST00000666568.1 ENST00000439211.7 upstream downstream duplicates(1) GCTCCTCCGAAAGGTTTCGGAAGCTGGTGGTAGCTCTGAAGATAACGCTGCGTTAGGGCATACTGCGGCGGAGGATGGAACTCCGATTGAAAGCAGTTGCTGGAGTGGAGCACGAATTTCAACA___AGCCGCATGTTGAAGTGTGAGGCGTGAAAGGGTATGTCTGATATTTGCTTTAAAATGCTCCAGCAAAGAAATTAAGGGATGGATGAAGCAAAAGAG|GGAACCTCCACAAGGAGCTCATTTTCTTTCCAGAAGTCTAGATGATGCCTTAAAACTTACTGAACAACCAGAATTAGCAAATAAAGTAGACATGGTCTGGATAGTTGGTGGCAGTTCTGTTTATAAG___GAAGCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAAGACTTTGAAAGTGAC...GTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGA___ATACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGAAGAATGATTAATATGAAGGTGTTTTCTAGTTTAAGTTGTTCCCCCTCCCTCTGAAAAAAGTATGTATTTTTACATTAGAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1524 URB2::DMD ENSG00000135763.10::ENSG00000198947.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA URB2 ENSG00000135763.10 protein_coding + + chr1:229626247-229660200:+ chr1:229638247:+ chr1:229761994-229795947:+ chr1:229773994:+ DMD ENSG00000198947.18 protein_coding - + chrX:31097677-33339609:- chrX:33048953:+ chrX:31115794-33357726:- chrX:33067070:+ chr1:229639108 chrX:33001770 NA NA chr1:229774855 chrX:33019887 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 2 0 2 39 6 ENST00000258243.7 unknown downstream upstream none CTTGGAAGCCGACCTGGGTCAGCACTGCAGGGATGGAGGGGCCGACATTTCCCAAGGAAGCGACAGGACGCTGCTCTCCCATGTTGCCCTCTACCAGGGTG...GGAGTTGCCAGCTCTCGCGGGACATGATCAGTCTTTTCAGGCAGCCTTGCAGTTTTTGACTCTGTTCTTTTTGGCCCCAGAACTGCATCCCAAAAAGGACTCCGTGTTTACCTCCATGTTTCATTCTGTGAGAAGAGTTCTTGCAG|GGCCAGTGTATTCACTCAATCTTCC ELPALAGHDQSFQAALQFLTLFFLAPELHPKKDSVFTSMFHSVRRVLA|gpvyslnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1540 PIGU::NCOA6 ENSG00000101464.11::ENSG00000198646.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 248 TRUE 96 PIGU ENSG00000101464.11 protein_coding - - chr20:34560542-34698790:- chr20:34657180:- chr20:33148346-33286594:- chr20:33244984:- NCOA6 ENSG00000198646.14 protein_coding - - chr20:34689097-34825651:- chr20:34697246:- chr20:33276901-33413454:- chr20:33285050:- chr20:34645874,chr20:34645878 chr20:34706588,chr20:34706589 NA NA chr20:33233678,chr20:33233682 chr20:33294392,chr20:33294393 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none GPI_transamidase_subunit_PIG-U(14%)| PIG-U(19%)| 7 1 1 323 7 ENST00000217446.8 ENST00000434040.5 upstream downstream duplicates(1),low_entropy(1) CTGGTGGTGGCTGTGACAGTGCGGGCGGCCTTGTTCCGCTCCAGTCTGGCCGAGTTCATTTCCGAGCGGGTGGAGGTGGTGTCCCCACTGAGCTCTTGGAAGAGAG___TGGTTGAAGGCCTTTCACTGTTGGACTTGGGAGTATCTCCGTATTCTGGAGCAGTATTTCATGAA|CAGCTGGTGCTCCCATGAAGGACCAAATGCTATGTGTGGAGAGGGCCACAAGAGGAGGACCCAAGAGGGACCTCTACAAGCTGAGAGTTGAGAGTGGTCCCCTGCCAACAGAAAGTGAGAAAACAGGGCCTTGCTAATATGGTCACAAGAAAATGAATTCTTCCAACATCCAGAGGGAG LVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSGAVFHE|qlvlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Bladder Urothelial Carcinoma,Uterine Carcinosarcoma BLADDER,UTERUS no_match 33233079|33244984|33233079,33162908 FALSE|TRUE|FALSE,FALSE 33315211|33315211|33303169,33315211 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1541 PIGU::NCOA6 ENSG00000101464.11::ENSG00000198646.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 248 TRUE 96 PIGU ENSG00000101464.11 protein_coding - - chr20:34560542-34698790:- chr20:34657180:- chr20:33148346-33286594:- chr20:33244984:- NCOA6 ENSG00000198646.14 protein_coding - - chr20:34689097-34825651:- chr20:34697243:- chr20:33276901-33413454:- chr20:33285047:- chr20:34645874,chr20:34645878 chr20:34706588,chr20:34706589 NA NA chr20:33233678,chr20:33233682 chr20:33294392,chr20:33294393 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none GPI_transamidase_subunit_PIG-U(14%)| PIG-U(19%)| 3 2 1 323 7 ENST00000217446.8 ENST00000434040.5 upstream downstream none CAGTTATCATGGCGGCTCCCTTGGTCCTGGTGCTGGTGGTGGCTGTGACAGTGCGGGCGGCCTTGTTCCGCTCCAGTCTGGCCGAGTTCATTTCCGAGCGGGTGGAGGTGGTGTCCCCACTGAGCTCTTGGAAGAGAG___TGGTTGAAGGCCTTTCACTGTTGGACTTGGGAGTATCTCCGTATTCTGGAGCAGTATTTCATGAA|CTGGTGCTCCCATGAAGGACCAAATGCTATGTGTGGAGAGGGCCACAAGAGGAGGACCCAAGAGGGACCTCTACAAGCTGAGAGTTGAGAGTGGTCCCCTGCCAACAGAAAGTGAGAAAACAGGGCCTTGCTAATATGGTCACAAGAAAATGAATTCTTCCAACATCCAGAGGGAGCTTGGAAGTTGATCTTTCTCTAGTCAAG MAAPLVLVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLSLLDLGVSPYSGAVFHE|lvlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Bladder Urothelial Carcinoma,Uterine Carcinosarcoma BLADDER,UTERUS no_match 33233079|33244984|33233079,33162908 FALSE|TRUE|FALSE,FALSE 33315211|33315211|33303169,33315211 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1543 EMP1::FAM234B ENSG00000134531.10::ENSG00000084444.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EMP1 ENSG00000134531.10 protein_coding + + chr12:13196723-13219941:+ chr12:13196872:+ chr12:13349657-13372875:+ chr12:13349806:+ FAM234B ENSG00000084444.14 protein_coding + + chr12:13044381-13142521:+ chr12:13122014:+ chr12:13197315-13295455:+ chr12:13274948:+ chr12:13208845,chr12:13208843 chr12:13119758,chr12:13119753 NA NA chr12:13361779,chr12:13361777 chr12:13272692,chr12:13272687 NA NA sense sense unknown 5'UTR/splice-site intron duplication medium none none none 0 6 1 1948 12 ENST00000256951.10 unknown downstream upstream duplicates(2),mismatches(2) GTCCTTCCCCTCAGTGCGGTCACATACTTCCAGAAGAGCGGACCAGGGCTGCTGCCAGCACCTGCCACTCAGAGCGCCTCTGTCGCTGGGACCCTTCAG|TTCCTCAGGATGAAGTGCCTGCCTTGTCCTTGACCTAGTCCCACAATCCCAAGAATTCAGCTGCCATGTTCCAGGACACTCTTGGCCAGCATGATGCCTGGATCATTGTGTCTTCTATCCCAGATGTGCTGCTGTATGTGGGCCACTTGTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1552 RAD9A::RBM4 ENSG00000172613.8::ENSG00000173933.21 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD9A ENSG00000172613.8 protein_coding + + chr11:67317871-67398410:+ chr11:67321333:+ chr11:67085342-67165881:+ chr11:67088804:+ RBM4 ENSG00000173933.21 protein_coding + + chr11:66638667-66668374:+ chr11:66665856:+ chr11:66406138-66435845:+ chr11:66433327:+ chr11:67359805,chr11:67359806,chr11:67359729 chr11:66659290,chr11:66659288,chr11:66659462 NA NA chr11:67127276,chr11:67127277,chr11:67127200 chr11:66426761,chr11:66426759,chr11:66426933 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%) |RRM_1(0%) 0 2 2 124 839 ENST00000622583.4 ENST00000396053.9 downstream upstream none CATCTGGGGGCCACAAATGCTCCTTCTCCTGGAGACGCAACTCAAG|GCAAGATAACCCCTGTGACAGAAGGCTACTGTTGCTGTAACAAAGGGCATACATACATTTTCAAGAACTGCAATTTAATTTTGGAGTCCAGGAAAAGCAGAAGATGCTGAGATGTCATATATGGCGAATTGCACTATTCTAAATGTGTTTTGTTTTAATCTTTCACAGTAAACAAGCTTTCAGAAATGATGGTCACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1559 IQGAP3::BCAN ENSG00000183856.11::ENSG00000132692.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IQGAP3 ENSG00000183856.11 protein_coding - - chr1:156525405-156572604:- chr1:156560934:- chr1:156495197-156542396:- chr1:156530726:- BCAN ENSG00000132692.19 protein_coding + - chr1:156641390-156659532:+ chr1:156647154:- chr1:156611182-156629324:+ chr1:156616946:- chr1:156559496,chr1:156559502 chr1:156654971,chr1:156654974 NA NA chr1:156529288,chr1:156529294 chr1:156624763,chr1:156624766 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Calponin_homology_(CH)_domain(100%)| CH(100%)| 0 0 3 291 145 ENST00000491900.1 unknown upstream downstream multimappers(1) CAAGGCCCTTCAAGACCCTGCCCTGGCCCTGCGAGGGGTGAGGAGAGACTTTGCTGACTGGTACCTGGAGCAGCTGAACTCAGACAGAGAGCAGAAGGCACAG___GAGCTGGGC...AGGCTGGgGTGGCTGCAGCCAACACAAAGGGTGATCAGGAACAAGCCA|CGTCGCTGCTGTCATCGATGCCGTGCTGGACCTCACAGCGATAGATAC___...GGGGCGCAGCTCGCTCAGCGCCAGGGAGACGTCGGTGAGCGACGCTGGGTACGCAGGCAGTGCCACGCGGAACCGGTAGGCCTCGTTCACCTTGACGCGCA...___CTGAG AGVAAANTKGDQEQA|tsllssmpcwtsqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1561 VCL::ADK ENSG00000035403.18::ENSG00000156110.15 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 251 FALSE NA VCL ENSG00000035403.18 protein_coding + + chr10:73995193-74121363:+ chr10:74074903:+ chr10:75754951-75881121:+ chr10:75834661:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74394141:+ chr10:75910960-76469721:+ chr10:76153899:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Vinculin_family(23%)|pfkB_family_carbohydrate_kinase(82%) Vinculin(58%)|PfkB(61%) 2 2 2 677 583 ENST00000372755.7 ENST00000673352.1 downstream upstream none AAGATGGCCAAGATGATTGACGAGAGACAGCAGGAGCTCACTCACCAGGAGCACCGAGTGATGTTGGTGAACTCGATGAACACCGTGAAAGAGTTGCTGCCAGTTCTCATTTCA...AAGGCATAGAGGAAGCTTTAAAAAATCGCAATTTTACTGTAGAAAAAATGAGTGCTGAAATTAATGAGATAATTCGTGTGTTACAACTCACCTCTTGGGATGAAGATGCCTGGGCCAGCAAG|TGGATGATTCAACAGCCACACAAAGCAGCAACATTTTTTGGATGCATTGGGATAGATAAATTTGGGGAGATCCTGAAGAGAAAAGCTGCTGAAGCCCATGTGGATGCTCATTACTACGAGCAGAATGAGCAGCCAACAGGAACTTGTGCTGCATGCATCACTGGTGACAACAG___GTCCCTCATAGCTAATCTTGCTGCTGCCAATTGTTATAAAAA GIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASK|WMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACITGDNRSLIANLAAANCYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1565 HSDL2-AS1::PTBP3 ENSG00000230185.7::ENSG00000119314.16 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 252 TRUE 97 HSDL2-AS1 ENSG00000230185.7 lncRNA - - chr9:112399512-112487204:- chr9:112486390:- chr9:115161792-115249484:- chr9:115248670:- PTBP3 ENSG00000119314.16 protein_coding - - chr9:112217716-112333664:- chr9:112228472:- chr9:114979996-115095944:- chr9:114990752:- chr9:112420133,chr9:112420468,chr9:112420471 chr9:112232495,chr9:112232495,chr9:112232495 NA NA chr9:115182413,chr9:115182748,chr9:115182751 chr9:114994775,chr9:114994775,chr9:114994775 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(74%) |RRM_1(2%),RRM_5(5%) 1 1 1 15 96 ENST00000687181.2 ENST00000334318.10 upstream downstream duplicates(1) TCAGTCCCTACTGCCCCGACAGGTGTGGAACCCGCCGTCCCCGCTATGGTCCGAGGAAGTGTACAGCACTGCTCCCTACTACACGTCCTGGGCCCGCGGTCCCCGATGCCCCCCGGAGCTCTGTGCACCTCCACTGAAACGCAAGGAGCAGACAGAACCTACACCATCCGTGAG|GAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAGAAAGAAAATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1566 HSDL2-AS1::PTBP3 ENSG00000230185.7::ENSG00000119314.16 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 252 TRUE 97 HSDL2-AS1 ENSG00000230185.7 lncRNA - - chr9:112399512-112487204:- chr9:112486390:- chr9:115161792-115249484:- chr9:115248670:- PTBP3 ENSG00000119314.16 protein_coding - - chr9:112217716-112333664:- chr9:112231413:- chr9:114979996-115095944:- chr9:114993693:- chr9:112420133,chr9:112420468,chr9:112420471 chr9:112232495,chr9:112232495,chr9:112232495 NA NA chr9:115182413,chr9:115182748,chr9:115182751 chr9:114994775,chr9:114994775,chr9:114994775 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(80%) |RRM_1(12%),RRM_5(21%) 0 1 1 15 83 ENST00000687181.2 ENST00000334318.10 upstream downstream none TCAGTCCCTACTGCCCCGACAGGTGTGGAACCCGCCGTCCCCGCTATGGTCCGAGGAAGTGTACAGCACTGCTCCCTACTACACGTCCTGGGCCCGCGGTC...CTGAAACGCAAGGAGCAGACAGAACCTACACCATCCGTGAG|CTTATCACACCACATGGGCTTTTTATCCTATTTG___GAGTCTATGGTGATGTACATCtAGTG...CAATGAACCcTCTAAGTGGgCAGAGACTTTATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1574 NUP210::HDAC11 ENSG00000132182.13::ENSG00000163517.15 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP210 ENSG00000132182.13 protein_coding - - chr3:13316235-13420322:- chr3:13365946:- chr3:13357735-13461822:- chr3:13407446:- HDAC11 ENSG00000163517.15 protein_coding + - chr3:13479724-13506424:+ chr3:13488237:- chr3:13521224-13547924:+ chr3:13529737:- chr3:13365688,chr3:13365696 chr3:13489018,chr3:13489020 NA NA chr3:13407188,chr3:13407196 chr3:13530518,chr3:13530520 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 199 289 202 1544 712 ENST00000254508.7 unknown upstream downstream duplicates(123),inconsistently_clipped(2),low_entropy(6),mismatches(25) CGGCGGGGCCAGTGAGGTGGTCACCTTGAGCGACTGCTCCCACTTTGACTTGGCTGTCGAGGTGGAGAACCAGGGTGTGTTCCAGCCACTCCCAG___GGAGGCTGCCGCCAGGCTCTGAGCACTGCAGCGGCgTCCGGGTAAAGGCCGAGGCCCAGGGCTCTACCACGCTTCTTGTGAGCTACAGACACGGCCACGTCCACCTGAGTGCCAAGATCACCATTGCTGCCTACCTGCCCCTCAAG|GAGAGAGGAGCCCCTCAGGGAAGAGAAGAGAGAGTTGGAGACCAAGAGGAGCTCACTCCCCTAGAGACTCTCCAGGGTCCCTCCAGGTGCTCCATGGAGCTATGGTCTGTGTCTCCTTCTCTCCACACTATACTGGAACTCATGACAGATAGTTCTGCCCTGGGATCTTTGCACTTGCTGTTTCTTCTGCTTGGAATGCCCTTCCCCAGATGACCACATCACCCACTCCCTCACTCCCTTCCCACATGTCACCTGTGATCACAGGTAGTAAGCCCTTTCCTGA GGASEVVTLSDCSHFDLAVEVENQGVFQPLPGRLPPGSEHCSGvRVKAEAQGSTTLLVSYRHGHVHLSAKITIAAYLPLK|ergapqgreervgdqeeltpletlqgpsrcsmelwsvspslhtilelmtdssalgslhllflllgmpfpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1577 PLAUR::LYPD5 ENSG00000011422.12::ENSG00000159871.15 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 144 TRUE 253 FALSE NA PLAUR ENSG00000011422.12 protein_coding - - chr19:43646095-43670547:- chr19:43652225:- chr19:44150247-44174699:- chr19:44156377:- LYPD5 ENSG00000159871.15 protein_coding - - chr19:43785874-43827206:- chr19:43799834:- chr19:44290026-44331358:- chr19:44303986:- chr19:43650635 chr19:43822296 NA NA chr19:44154787 chr19:44326448 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none u-PAR/Ly-6_domain(73%)|u-PAR/Ly-6_domain(100%) UPAR_LY6(52%)|UPAR_LY6(100%) 6 6 7 627 12 ENST00000339082.7 ENST00000377950.8 upstream downstream duplicates(5) AGGATGACCGCCACCTCCGTGGCTGTGGCTACCTTCCCGGCTGCCCGGGCTCCAATGGTTTCCACAACAACGACACCTTCCACTTCCTGAAATGCTGCAACACCACCAAATGCAACGAGGGCCCAA___TCCTGGAGCTTGAAAATCTGCCGCAGAATGGCCGCCAGTGTTACAGCTGCAAGGGGAACAGCACCCATGGATGCTCCTCTGAAGAGACTTTCCTCATTGACTGCCGAGGCCCCATGAATCAATGTCTGGTAGCCACCGGCACTCACG|GGTCCCAAGCCCTGCAGTGCTACAGCTTTGAGCACACCTACTTTGGCCCCTTTGACCTCAGGGCCATGAAGCTGCCCAGCATCTCCTGTCCTCATGAGTGCTTTGAGGCTATCCTGTCTCTGGACACCG___GGTATCGCGCGCCGGTGACCCTGGTGCGGAAGGGCTGCTGGACCGGGCCTCCTGCGGGCCAGACGCAATCGAACGCGG DDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTH|gSQALQCYSFEHTYFGPFDLRAMKLPSISCPHECFEAILSLDTGYRAPVTLVRKGCWTGPPAGQTQSNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1580 MGRN1::C16orf96 ENSG00000102858.13::ENSG00000205832.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 146 FALSE NA FALSE NA MGRN1 ENSG00000102858.13 protein_coding + + chr16:4616493-4690974:+ chr16:4625048:+ chr16:4666494-4740975:+ chr16:4675049:+ C16orf96 ENSG00000205832.8 protein_coding + + chr16:4556340-4600758:+ chr16:4571561:+ chr16:4606341-4650759:+ chr16:4621562:+ chr16:4646646,chr16:4646646,chr16:4646646,chr16:4646647 chr16:4568078,chr16:4567879,chr16:4568075,chr16:4568076 NA NA chr16:4696647,chr16:4696647,chr16:4696647,chr16:4696648 chr16:4618079,chr16:4617880,chr16:4618076,chr16:4618077 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF4795)(100%) |DUF4795(100%) 10 48 35 174 113 ENST00000415496.5 ENST00000444310.5 downstream upstream duplicates(15),low_entropy(2),mismatches(3) GGTCCGGGCCATGTCCGCGTGAGGACCCCGCCGCTGTCGCCGCTCCCGTTCCGGCCCTGGCCCCTCTGCCCGGCAGCGCgGCGCACCATGGGCTCCATTCTCAGCCGCCGCATCGCGGGGGTGGAGGACATCGACATCCAGGCGAACTCGGCCTATCGCTACCCTCCGAAGTCCG|TCAATGCAGACCCTGCAGGACTTGCTCACTGATCTTCATGCACTCCAGGTCACCATCACAGCCCTCAGAAAAGAAGTGGACATGCTGAAGAACATGCTTGACAAG___GTACACCCAGAAAGAATGGACATCTTTGCTGAAGACTTCAAAATACAGAACTGGAAGATGGTTGCACTGCAGCGGGAAGTG___GCTTCTCTCCAGAATAAGTTTAAAACCATCCCCAAAACCGAGGACATGGTGCTCTGGAGTGGCCTTCATGATGCCATGTTCACCTCA___GAAATTGGTTCATCACCACTGGACCTGTGGCAGTCTGTAGAGCAGCTCCCAGAGGCTGCCCTGGCCCAGACCACCAAGTACCTTGAAGCTACT MGSILSRRIAGVEDIDIQANSAYRYPPKS|vnadpaglah* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA TRUE Liver hepatocellular carcinoma,Lung squamous cell carcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma LIVER,LUNG,LIVER,SKIN no_match 4718313,4675049,4675049,4675049 FALSE,TRUE,TRUE,TRUE 4621562,4621562,4621562,4621562 TRUE,TRUE,TRUE,TRUE YES,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1581 NT5DC1::FRK ENSG00000178425.14::ENSG00000111816.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 147 FALSE NA FALSE NA NT5DC1 ENSG00000178425.14 protein_coding + + chr6:116100851-116249497:+ chr6:116117945:+ chr6:116422014-116570660:+ chr6:116439108:+ FRK ENSG00000111816.8 protein_coding - - chr6:115931149-116060891:- chr6:115968739:- chr6:116252312-116382054:- chr6:116289902:- chr6:116128212,chr6:116128210 chr6:115991195,chr6:115991197 NA NA chr6:116449375,chr6:116449373 chr6:116312358,chr6:116312360 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none 5'_nucleotidase_family(51%)|Protein_kinase_domain(100%),SH2_domain(48%) 5_nucleotid(12%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(0%) 32 7 40 321 88 ENST00000319550.9 ENST00000606080.2 downstream downstream duplicates(18),mismatches(5) GCAGAGGCATATGGCAAGAAAGAGTGGAAGCACTTCTTGTCGGACACTGGAATGGCTTGCCGCTCAG___GAAAGTATTACTTTTACGACAACTACTTTGACCTGCCAGGAGCTCTTCTGTGTGCCAGGGTGGTGGACTATTTAACAAAA___CTGAACAATGGTCAAAAAACATTTGATTTTTGGAAGGATATAGTTGCTGCTATACAACACAATTATAAAATGTCAGCTTTTAAGG|TTTTAGATGGAGCAGTTGTAAAACACTACAGAATTAAAAGACTGGATGAAGGGGGATTTTTTCTCACGCGAAGAAGAATCTTTTCAACACTGAACGAATTTGTGAGCCACTACACCAAGACAAGTGACGGCCTGTGTGTCAAGCTGGGGAAACCATGCTTAAAG___ATCCAGGTCCCAGCTCCATTTGATTTGTCGTATAAAACCGTGGACCAATGGGAGATAGACCGCAACTCCATACAGCTTCTGAAGCG AEAYGKKEWKHFLSDTGMACRSGKYYFYDNYFDLPGALLCARVVDYLTKLNNGQKTFDFWKDIVAAIQHNYKMSAFK|vLDGAVVKHYRIKRLDEGGFFLTRRRIFSTLNEFVSHYTKTSDGLCVKLGKPCLKIQVPAPFDLSYKTVDQWEIDRNSIQLLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Tyrosine-protein kinase FRK TK Src P42685 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1584 CEP97::PDCL3P4 ENSG00000182504.12::ENSG00000244119.2 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 256 TRUE 98 CEP97 ENSG00000182504.12 protein_coding + + chr3:101724534-101770562:+ chr3:101727541:+ chr3:101443378-101489406:+ chr3:101446385:+ PDCL3P4 ENSG00000244119.2 transcribed_processed_pseudogene + + chr3:101686827-101713301:+ chr3:101709009:+ chr3:101405671-101432145:+ chr3:101427853:+ chr3:101727915,chr3:101727914 chr3:101701934,chr3:101701930 NA NA chr3:101446759,chr3:101446758 chr3:101420778,chr3:101420774 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Leucine-rich_repeat(6%)| LRR_4(2%),LRR_8(0%),LRR_9(0%)| 19 19 33 148 92 ENST00000704365.1 ENST00000685383.1 downstream upstream duplicates(14),mismatches(2) ACAGAAATTAGGTCCAAATTTACCCTGTGAAGCTGATATTCACACTTTGATTCTGGATAAAAATCAGATTATTAAATTGGAAAATCTGGAGAAATGCAAACGATTAATACAG___TTATCAGTAGCTAATAATCGGCTGGTTCGGATGATGGGTGTGGCCAAGCTGACGTTGCTTCGTGTATTAAATTTGCCTCATAATAGCATTGGCTGTGTGGAAGGGCTAAAGGAACTAGTACATCTGGAATGGCTGAATTTGGCAGGAAATAATCTTAAG|ACACAACAACCGACCAGCATTGATGTTAAAGAAGAGATATCAAGACTGACAGAAAGGACTTTTTGTGGCAAAAAGGTATCAAAAGATAAACAAGACCCAAGGCCATGCCAG___AGACAAGGCCTGGAGTTACCCATGCTGGAGTGCAGTGGTGTGACTGTAGCTCCCTGCAGCCTCGAACTCCTTGGCCTCAATTGATCCTGCCACCTTACCTTCTGAGTAACTGGGACTACAGTGTGTGTCACCACACC-?TTTTTTTTTTGACATGAGGGATATAT QKLGPNLPCEADIHTLILDKNQIIKLENLEKCKRLIQLSVANNRLVRMMGVAKLTLLRVLNLPHNSIGCVEGLKELVHLEWLNLAGNNLK|tqqptsidvkeeisrltertfcgkkvskdkqdprpcqrqglelpmlecsgvtvapcslellgln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1585 CEP97::PDCL3P4 ENSG00000182504.12::ENSG00000244119.2 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 256 TRUE 98 CEP97 ENSG00000182504.12 protein_coding + + chr3:101724534-101770562:+ chr3:101727541:+ chr3:101443378-101489406:+ chr3:101446385:+ PDCL3P4 ENSG00000244119.2 transcribed_processed_pseudogene + + chr3:101686827-101713301:+ chr3:101709202:+ chr3:101405671-101432145:+ chr3:101428046:+ chr3:101727915,chr3:101727914 chr3:101701934,chr3:101701930 NA NA chr3:101446759,chr3:101446758 chr3:101420778,chr3:101420774 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Leucine-rich_repeat(6%)| LRR_4(2%),LRR_8(0%),LRR_9(0%)| 2 0 14 148 19 ENST00000704365.1 ENST00000685383.1 downstream upstream duplicates(1) CGGTTGCCTGGTATTATTAGCAAGCAGCAAATATGGCGGTGGCGCGCGTGGACGCGGCTTTGCCTCCCGGAGAAG___GATCAGTGGTCAATTGGTCAGGACAGGGAC...ATTCACACTTTGATTCTGGATAAAAATCAGATTATTAAATTGGAAAATCTGGAGAAATGCAAACGATTAATACAG___TTATCAGTAGCTAATAATCGGCTGGTTCGGATGATGGGTGTGGCCAAGCTGACGTTGCTTCGTGTATTAAATTTGCCTCATAATAGCATTGGCTGTGTGGAAGGGCTAAAGGAACTAGTACATCTGGAATGGCTGAATTTGGCAGGAAATAATCTTAAG|CTAAACCATCACTGGCCTACAGATAAGCAATATTAAAACAACTGTAGCTCACCATCAGACACTGAATAACTGATCCCCG IHTLILDKNQIIKLENLEKCKRLIQLSVANNRLVRMMGVAKLTLLRVLNLPHNSIGCVEGLKELVHLEWLNLAGNNLK|lnhhwptdkqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1586 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 149 TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75244619:- chr17:73232694-73258444:- chr17:73240700:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225103:+ chr17:73201754-73231853:+ chr17:73221198:+ chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 chr17:75244661,chr17:75244660 chr17:75223196,chr17:75223196 chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 chr17:73240742,chr17:73240741 chr17:73219291,chr17:73219291 sense sense in-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(69%)|Nup85_Nucleoporin(73%) VHS(92%)|Nucleopor_Nup85(39%),TPR_4(0%) 22 20 26 169 418 ENST00000621217.4 ENST00000245544.9 upstream upstream duplicates(9),mismatches(11) ATGGCGGAGGCGGAAGGGGAAAGCCTGGAGTCCTGGCTCA___ATAAAGCCACCAATCCTTCCAACCGCCAGGAGGACTGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGG___GCCACAGATCGCCGTCCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACG___GTGCTGGAGGCATGCATGAAGAACTGTGGGAGGAGATTTCATAACGAAGTGGGGAAGTTCCGCTTTTTGAATGAGTTAATCAAAGTCGTCTCTCCAAAG|GTGACCATCTTGGTGCTGCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGGAAGCCGATGCCAGCCCCGCCTCTGCAGGCATATGCCGAATCATGGGGGACCTGATGAGGACAATGCCCATTCTTAGT___CCtGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGGCAGCACTGGCACGAGGAATGTGAGCGGTACCTCCAGGACAGCACATTCGCCACCAGCCCTCACCTGGAGTCTCTCTTGAAG___ATTA MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK|VTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTMPILSPGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1587 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 150 TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75246509:- chr17:73232694-73258444:- chr17:73242590:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225103:+ chr17:73201754-73231853:+ chr17:73221198:+ chr17:75244661,chr17:75244660,chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 NA NA chr17:73240742,chr17:73240741,chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(45%)|Nup85_Nucleoporin(73%) VHS(81%)|Nucleopor_Nup85(39%),TPR_4(0%) 4 6 12 219 418 ENST00000621217.4 ENST00000245544.9 upstream upstream duplicates(4),mismatches(5) CTGGAGTCCTGGCTCA___ATAAAGCCACCAATCCTTCCAACCGCCAGGAGGACTGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGG___GCCACAGATCGCCGTCCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACG|GTGACCATCTTGGTGCTGCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGGAAGCCGATGCCAGCCCCGCCTCTGCAGGCATATGCCGAATCATGGGGGACCTGATGAGGACAATGCCCATTCTTAGT___CCtGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGGCAGCACTGGCACGAGGAATG LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALT|VTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTMPILSPGNTQTLTELELKWQHWHEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1588 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75244619:- chr17:73232694-73258444:- chr17:73240700:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225342:+ chr17:73201754-73231853:+ chr17:73221437:+ chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 chr17:75244661,chr17:75244660 chr17:75223196,chr17:75223196 chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 chr17:73240742,chr17:73240741 chr17:73219291,chr17:73219291 sense sense in-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(69%)|Nup85_Nucleoporin(65%) VHS(92%)|Nucleopor_Nup85(38%) 1 0 15 169 546 ENST00000621217.4 ENST00000245544.9 upstream upstream duplicates(3),mismatches(2) TGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGG___GCCACAGATCGCCGTCCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACG___GTGCTGGAGGCATGCATGAAGAACTGTGGGAGGAGATTTCATAACGAAGTGGGGAAGTTCCGCTTTTTGAATGAGTTAATCAAAGTCGTCTCTCCAAAG|CCtGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGGCAGCACTGGCACGAGGAATGTGAGCGGTACCTCCAGGACAGCACATTCGCCACCAGCCCTCACCTGGAGTCTCTCTTGAAG___ATTATGCTGGGAGACGAAGCTGCCTTGTTAGAGCAGAAGGAACTTCTGAGTAATTGGTATCATTTCCTAGTGACTCG WEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK|PGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1589 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75246509:- chr17:73232694-73258444:- chr17:73242590:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225342:+ chr17:73201754-73231853:+ chr17:73221437:+ chr17:75244661,chr17:75244660,chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 NA NA chr17:73240742,chr17:73240741,chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none VHS_domain(45%)|Nup85_Nucleoporin(65%) VHS(81%)|Nucleopor_Nup85(38%) 0 0 0 219 546 ENST00000621217.4 ENST00000245544.9 upstream upstream mismatches(1) CTGCAATATGGCGGAGGCGGAAGGGGAAAGCCTcGAGaCCTGGCTCA___ATAAAaCCACCAATCCTTCCAACCGCCAGGAaGACTGGGAAaACATAATTGGCT...CCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACG|CCtGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGtCAGCACTGGCACGAGGAATGTG PQEWEALQALT|PGNTQTLTELELKcQHWHEEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1590 UBA2::GPI ENSG00000126261.13::ENSG00000105220.17 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 151 TRUE 258 TRUE 100 UBA2 ENSG00000126261.13 protein_coding + + chr19:34428352-34471251:+ chr19:34445121:+ chr19:34919257-34962156:+ chr19:34936026:+ GPI ENSG00000105220.17 protein_coding + + chr19:34359480-34402413:+ chr19:34393248:+ chr19:34850385-34893318:+ chr19:34884153:+ chr19:34450014,chr19:34450011 chr19:34383192,chr19:34383181 NA NA chr19:34940919,chr19:34940916 chr19:34874097,chr19:34874086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none ThiF_family(57%)|Phosphoglucose_isomerase(56%) NAD_binding_7(100%),ThiF(52%)|PGI(20%) 16 12 39 1795 5401 ENST00000246548.9 ENST00000415930.8 downstream upstream duplicates(13),low_entropy(1),mismatches(9) CCCAGAGAACCTTTCCTGGCTGTACAATTCGTAACACACCTTCAGAACCTATACATTGCATCGTTTGGGCAAAGTACTTGTTCAA___CCAGTTGTTTGGGGAAGAAGATGCTGATCAAGAAGTATCTCCTGACAGAGCTGACCCTGAAGCTGCCT___GGGAACCAACGGAAGCCGAAGCCAGAGCTAGAGCATCTAATGAAGATGGTGACATTAAACGTATTTCTACTAAGGAATGGGCTAAATCAACTGGATATGATCCAGTTAAACTTTTTACCAAG|TGGGTGGGAGGACGCTACTCGCTGTGGTCGGCCATCGGACTCTCCATTGCCCTGCACGTGG___GTTTTGACAACTTCGAGCAGCTGCTCTCGGGGGCTCACTGGATG___GACCAGCACTTCCGCACGACGCCCCTGGAGAAGAACGCCCCCGTCTTGCTGGCCCTGCTGGGTATCTGGTACATCAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCCTATGACCA QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTK|WVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 34919475 FALSE 34869839 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1591 UBA2::GPI ENSG00000126261.13::ENSG00000105220.17 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 258 TRUE 100 UBA2 ENSG00000126261.13 protein_coding + + chr19:34428352-34471251:+ chr19:34445121:+ chr19:34919257-34962156:+ chr19:34936026:+ GPI ENSG00000105220.17 protein_coding + + chr19:34359480-34402413:+ chr19:34396301:+ chr19:34850385-34893318:+ chr19:34887206:+ chr19:34450014,chr19:34450011 chr19:34383192,chr19:34383181 NA NA chr19:34940919,chr19:34940916 chr19:34874097,chr19:34874086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none ThiF_family(57%)|Phosphoglucose_isomerase(38%) NAD_binding_7(100%),ThiF(52%)|PGI(10%) 0 1 4 1795 5539 ENST00000246548.9 ENST00000415930.8 downstream upstream duplicates(1),mismatches(2) AAGAAGTATCTCCTGACAGAGCTGACCCTGAAGCTGCCT___GGGAACCAACGGAAGCCGAAGCCAGAGCTAGAGCATCTAATGAAGATGGTGACATTAAACGTATTTCTACTAAGGAATGGGCTAAATCAACTGGATATGATCCAGTTAAACTTTTTACCAAG|GGCGACATGGAGTCCAATGGGAAATACATCACCAAATCTGGAACCCGTGTGGACCACCAGACAGGCCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATGCTTTTTACCAGCTCATCCACCAAG___GCACCAAGATGATACCCTGTGACTTCCTCATCCCGGTCCAGACCCAGCACCCCATACGGAAGGGTCTG EVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTK|GDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 34919475 FALSE 34869839 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1592 PRMT3::RBM4B ENSG00000185238.13::ENSG00000173914.12 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 152 TRUE 259 TRUE 101 PRMT3 ENSG00000185238.13 protein_coding + + chr11:20387558-20509338:+ chr11:20389826:+ chr11:20409104-20530884:+ chr11:20411372:+ RBM4B ENSG00000173914.12 protein_coding - - chr11:66664998-66677887:- chr11:66669291:- chr11:66432469-66445358:- chr11:66436762:- chr11:20392145 chr11:66675813 NA NA chr11:20413691 chr11:66443284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(6%),Zinc_knuckle(100%) zf-C2H2_2(100%)|RRM_1(49%),RRM_5(0%),zf-CCHC(100%),zf-CCHC_3(100%) 7 3 22 336 138 ENST00000331079.11 ENST00000310046.9 downstream downstream duplicates(5),mismatches(2) TCGGGGCACCACAGCCATGTGCTCGTTAGCGTCAGGCGCTACCG___...GCCGCCTGGGAGGATGAGGACGATGCAGATCTCCCCCACGGCAAGCAGCAGACCCCCTGCCTGTTCTGTAACAG___GTTATTCACATCTGCTGAAGAAACATTTTCACACTGTAAGTCTGAGCATCAGTTTAATATTGACAGCATGGTTCATAAACATG|GCAAAAGAATGCATGTGCAGTTGTCCACAAGCCGGCTTCGGACTGCCCCTGGTATGGGAGACCAGAGTGGCTGCTATCGGTGTGGGAAAGAAGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCAGACTTTACTGAGCAGTATAATGAACAATATGGAGCAGTTCGAACACCTTACACCATGGGCTACGGGGAATCCATGTATTACAACGATGCATATGGAGCACTCGACTACTATAAGCGATACCGGGT AAWEDEDDADLPHGKQQTPCLFCNRLFTSAEETFSHCKSEHQFNIDSMVHKH|gKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1593 PRMT3::RBM4B ENSG00000185238.13::ENSG00000173914.12 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 259 TRUE 101 PRMT3 ENSG00000185238.13 protein_coding + + chr11:20387558-20509338:+ chr11:20388154:+ chr11:20409104-20530884:+ chr11:20409700:+ RBM4B ENSG00000173914.12 protein_coding - - chr11:66664998-66677887:- chr11:66669291:- chr11:66432469-66445358:- chr11:66436762:- chr11:20392145 chr11:66675813 NA NA chr11:20413691 chr11:66443284 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(6%),Zinc_knuckle(100%) zf-C2H2_2(1%)|RRM_1(49%),RRM_5(0%),zf-CCHC(100%),zf-CCHC_3(100%) 0 2 4 381 138 ENST00000331079.11 ENST00000310046.9 downstream downstream none TGGAGAATGAGGAGGACCTGCCAGAACTGTCGGACAGCGGGGACGAGGCCGCCTGGGAGGATGAGGACGATGCAGATCTCCCCCACGGCAAGCAGCAGACCCCCTGCCTGTTCTGTAACAG|GCAAAAGAATGCATGTGCAGTTGTCCACAAGCCGGCTTCGGACTGCCCCTG...GGAGACCAGAGTGGCTGCTATCGGTGTGGGAAAGAAGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCAGACTTTACTGAGCAGTATAATGAACAATATGGAGCAGTTCGAACACCTTACACCATGGGCTACGGGGAATCCATGTATTACAACGATGCATATGGAGCACTCGACTACTATAAGCGATACCGGG ENEEDLPELSDSGDEAAWEDEDDADLPHGKQQTPCLFCNr|qknacavvhkpasdcp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1594 PRMT3::RBM4B ENSG00000185238.13::ENSG00000173914.12 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 259 TRUE 101 PRMT3 ENSG00000185238.13 protein_coding + + chr11:20387558-20509338:+ chr11:20387774:+ chr11:20409104-20530884:+ chr11:20409320:+ RBM4B ENSG00000173914.12 protein_coding - - chr11:66664998-66677887:- chr11:66669291:- chr11:66432469-66445358:- chr11:66436762:- chr11:20392145 chr11:66675813 NA NA chr11:20413691 chr11:66443284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(6%),Zinc_knuckle(100%) |RRM_1(49%),RRM_5(0%),zf-CCHC(100%),zf-CCHC_3(100%) 0 2 0 179 138 ENST00000330796.9 ENST00000310046.9 downstream downstream none CGGGCTCTCGGGGCACCACAGCCATGTGCTCGTTAGCGTCAGGCGCTACCG|GCAAAAGAATGCATGTGCAGTTGTCCACAAGCCGGCTTCGGACTGCCCCTGGTATGGGAGACCAGAGTGGCTGCTATCGGTGTGGGAAAGAAGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCAGACTTTACTGAGCAGTATAATGAACAATATGGAGCAGTTCGAA?ACC MCSLASGAT|gKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVR? NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1595 NT5DC3::TTC41P ENSG00000111696.12::ENSG00000214198.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 260 TRUE 102 NT5DC3 ENSG00000111696.12 protein_coding - - chr12:103770453-103841234:- chr12:103798587:- chr12:104164231-104235012:- chr12:104192365:- TTC41P ENSG00000214198.8 transcribed_unitary_pseudogene - - chr12:103843749-103930211:- chr12:103906307:- chr12:104237527-104323989:- chr12:104300085:- chr12:103798027,chr12:103798029 chr12:103906795,chr12:103906794 NA NA chr12:104191805,chr12:104191807 chr12:104300573,chr12:104300572 NA NA sense sense out-of-frame CDS/splice-site exon duplication high none 5'_nucleotidase_family(27%)| 5_nucleotid(44%)| 4 6 13 89 22 ENST00000392876.8 ENST00000551270.1 upstream downstream duplicates(3),mismatches(1) CCGG___TATCCAGCAGAAATCAGGAAGTATGAGTATGACCCAAATTTTGCAATTCGTGGACTTCATTATGATGTACAGCGG___GCAGTATTAATGAAGATCGATGCTTTTCATTATATCCAGCTGGGAACTGTCTACAG___AGGCCTCAGTGTTGTCCCTGATGAAGAAGTCATTGAAATGTACGAGGGGTCCCACGTGCCCTTGGAGCAGATGAGTGACTTTTACGGAAAG|AGAACACGGTTGTGGGAAGTCCACTCTGATTGCCAACTGGGTTAATTACTTCAAAAAGAAACATCCGAGCATGTTGTTGATTCCTCATTTTGTGGGCAGCACCTGTGAAAGCAGCTACATCATGTCTGTGATCCATTACTTCATCACAGAATTACAGTACAGAAACTACG___GTGAAAGATTTTTCCTGGCTGCCACACTCACTCT...___CCTGTCCTACAAGTCGTTGTGTGtCCGCCCGGATGTGAGGACAGTGGAACTCATTAGCACAGGAGA RYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKIDAFHYIQLGTVYRGLSVVPDEEVIEMYEGSHVPLEQMSDFYGK|rtrlwevhsdcqlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1596 NT5DC3::TTC41P ENSG00000111696.12::ENSG00000214198.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 260 TRUE 102 NT5DC3 ENSG00000111696.12 protein_coding - - chr12:103770453-103841234:- chr12:103806322:- chr12:104164231-104235012:- chr12:104200100:- TTC41P ENSG00000214198.8 transcribed_unitary_pseudogene - - chr12:103843749-103930211:- chr12:103893396:- chr12:104237527-104323989:- chr12:104287174:- chr12:103798027,chr12:103798029 chr12:103906795,chr12:103906794 NA NA chr12:104191805,chr12:104191807 chr12:104300573,chr12:104300572 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none 5'_nucleotidase_family(20%)| 5_nucleotid(23%)| 0 1 2 93 31 ENST00000392876.8 ENST00000551270.1 upstream downstream none TTAATGAAGATCGATGCTTTTCATTATATCCAGCTGGGAACTGTCTACAG|GTGAAAGATTTTTCCTGGCTGCCACACTCACTCTCCCCTCATTGCAAATTTATCATGAGCACTGTCTCTTCCAGCCTGTCCTACAAGTCGTTGTGTGtCCGCCCGGATGTGAGGACAGTGGAACTCATTAGCACAGGAGATGAAGAAACAAAATTAAACATCTTTAGAAAGCATCTCTCCAT LMKIDAFHYIQLGTVYr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1597 NT5DC3::TTC41P ENSG00000111696.12::ENSG00000214198.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 260 TRUE 102 NT5DC3 ENSG00000111696.12 protein_coding - - chr12:103770453-103841234:- chr12:103814937:- chr12:104164231-104235012:- chr12:104208715:- TTC41P ENSG00000214198.8 transcribed_unitary_pseudogene - - chr12:103843749-103930211:- chr12:103893396:- chr12:104237527-104323989:- chr12:104287174:- chr12:103798027,chr12:103798029 chr12:103906795,chr12:103906794 NA NA chr12:104191805,chr12:104191807 chr12:104300573,chr12:104300572 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none 5'_nucleotidase_family(10%)| 5_nucleotid(0%)| 1 0 2 98 31 ENST00000392876.8 ENST00000551270.1 upstream downstream none GAGAAGCACAGAAG___AATTGGTTCCTTCCATTATGAGCAACTTGTTaAATCCAGATGCCATTTTCTCAAACAATGAAATGAGCCTGTCAGACATTGAAATCTATGGCTTCGATTATGATTACACCTTGGTGTTTTATTCAAAGCACCTCCACACGCTGATATTTAATGCTGCACGGGACCTTCTCATCAATGAACACCGG|GTGAAAGATTTTTCCTGGCTGCCACACTCACTCTCCCCTCATTGCAAATTTATCATGAGCACTGTCTCTTCCAGCCTGTCCTACAAGTCGTTGTGTGtCCGCCCGGATGTGAGGACAGTGGAACTCATTAGCACAGGAGATGAAGAAACAAAATTAAACATCTTTAGAAAGCATCTCTCCAT RSTEELVPSIMSNLLNPDAIFSNNEMSLSDIEIYGFDYDYTLVFYSKHLHTLIFNAARDLLINEHR|vkdfswlphslsphckfimstvssslsykslcvrpdvrtvelistgdeetklnifrkhls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1603 IMMP2L::ENSG00000226965 ENSG00000184903.10::ENSG00000226965.2 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111487238:- chr7:110302700-111202573:- chr7:111127294:- ENSG00000226965 ENSG00000226965.2 lncRNA - - chr7:110108031-110534757:- chr7:110511114:- chr7:109748088-110174814:- chr7:110151171:- chr7:110971565,chr7:110971584 chr7:110517601,chr7:110517608 NA NA chr7:110611621,chr7:110611640 chr7:110157658,chr7:110157665 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Signal_peptidase__peptidase_S26_(48%)| Peptidase_S26(5%)| 2 2 0 56 2 ENST00000405709.7 ENST00000667232.1 upstream downstream none GTTTTGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAGCGGGAGAAAGG___GTATGGCACAGTCACAAGGGTGGGTGAAAAGATACATCAAGGCCTTTTGTAAAGGCTTCTTTGTGGCGGTGCCTGTGGCAGTGACTTTCTTGGATCGGGTCGCCTGT...AGTCATCTGATGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACACCGTGGTGACATTGTATCATTGGT|AGTTTCCATAAAGGAACACAACCATGTGGACAACTTGATTATGCCCTACAAAACT___ATAGGTATTC...___GCTATCCAGCTCAATGAGAAGTCTGGAAGACCCAGCTACAGAGAAAATGAACTTAGAAG SSDVVLLNHWKVRNFEVHRGDIVSLv|vsikehnhvdnlimpyktigi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1607 U2SURP::PAQR9-AS1 ENSG00000163714.18::ENSG00000241570.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 262 TRUE 103 U2SURP ENSG00000163714.18 protein_coding + + chr3:142964497-143060725:+ chr3:143021555:+ chr3:142683339-142779567:+ chr3:142740397:+ PAQR9-AS1 ENSG00000241570.8 lncRNA + + chr3:142960650-143001559:+ chr3:142993997:+ chr3:142679492-142720401:+ chr3:142712839:+ chr3:143021984,chr3:143021984 chr3:142965343,chr3:142965340 NA NA chr3:142740826,chr3:142740826 chr3:142684185,chr3:142684182 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(12%)| RRM_1(2%)| 3 4 0 670 12 ENST00000493598.6 ENST00000595248.1 downstream upstream duplicates(4) CTTCAAGATTTGCAGATCAAAAAAATCCTCCAAATCAGTCTTCCAATGAAAGACCACCATCTCTTCTTGTGATAGAAACCAAAAAA[a]CCT___CCACTTAAAAA...AAAAAAAGCAATTTGGAACTCTTCAAAGAAGAATTAAAGCA___AATTCAAGAGGAACGTGATGAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACCTCCTCAGTCAGATTCTGATGGTCAGCGTCGTTCTA___TGGACGCGCCTTCAAGAAGAAATAGATCATCTG___TTCTTGATGATTACGCACCTGGCTCACATGATGTAGGAGATCCAAGCACTACTAATTTATACCTTGGAAACATTAATCCACAG|CACGTTTTTCAGCACCAGGACAAGCATCATTGCTCAAGGAGAGCTTGGTTGACAACAGGAAGTTAGAAGGAGTCTGAATTGTAACAAGTGTGGCAAGAGCACCAAGATCACTGTGTGTGTGTGTTCACAGAAAATGTACCAAAG___GGAGAAGCCTTAAAAACAAATGGCAGGTGTGGGCACCAGAAAATCAACACATCGGGAAGAGAAAAATGGCATGGTTTTACTGTAATTGTAAAAAG___ACGCCCTAAAGAGTGTCTATCGGATCACCCTCAAGTTGGGTCAAACGGCTCCTCTTCTCGGCTTTTCGGG KKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSVLDDYAPGSHDVGDPSTTNLYLGNINPQ|hvfqhqdkhhcsrrawlttgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1608 U2SURP::PAQR9-AS1 ENSG00000163714.18::ENSG00000241570.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 262 TRUE 103 U2SURP ENSG00000163714.18 protein_coding + + chr3:142964497-143060725:+ chr3:143021555:+ chr3:142683339-142779567:+ chr3:142740397:+ PAQR9-AS1 ENSG00000241570.8 lncRNA + + chr3:142960650-143001559:+ chr3:142990015:+ chr3:142679492-142720401:+ chr3:142708857:+ chr3:143021984,chr3:143021984 chr3:142965343,chr3:142965340 NA NA chr3:142740826,chr3:142740826 chr3:142684185,chr3:142684182 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(12%)| RRM_1(2%)| 3 3 0 670 6 ENST00000473835.7 ENST00000595248.1 downstream upstream duplicates(3) CCACTTAAAAAAGGAGAGAAAGAAAAGAAAAAAAGCAATTTGGAACTCTTCAAAGAAGAATTAAAGCA___AATTCAAGAGGAACGTGATGAGAGACATAAAACAAAAGGCAGATTAAGTCGATTTGAACCTCCTCAGTCAGATTCTGATGGTCAGCGTCGTTCTA___TGGACGCGCCTTCAAGAAGAAATAGATCATCTGGTG___TTCTTGATGATTACGCACCTGGCTCACATGATGTAGGAGATCCAAGCACTACTAATTTATACCTTGGAAACATTAATCCACAG|ACCGAGTTGCGCTCTTGTCGCCGAAAATGCAGTGCAATGGCATGATCTCGGCTGACTGCAACCTCTGCCTCCTGGGTTCA...ATGAAAAAGGAAATGAGAAATCACAGGAGAAAAACTAAAATTCAAAGTCCAGTAAACTGGaCAAATTGGAGTAATTAcTTCTTATTAACCAGAAAgGGAAC...GGAAGAGAAAAATGGCATGGTTTTACTGTAATTGTAAAAAG___ACGCCCTAAAGAGTGTCTATCGGATCACCCTCAAGTTGGGTCAAACGGCTCCTCTTCTCGGCTTTTCGGGAGCAACCCTATCTCAACATTCACCATCTTAAGATGAGCAGACTGCAAGTTTGCCT PLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDGQRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQ|telrscrrkcsama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1609 U2SURP::PAQR9-AS1 ENSG00000163714.18::ENSG00000241570.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 262 TRUE 103 U2SURP ENSG00000163714.18 protein_coding + + chr3:142964497-143060725:+ chr3:143021555:+ chr3:142683339-142779567:+ chr3:142740397:+ PAQR9-AS1 ENSG00000241570.8 lncRNA + + chr3:142960650-143001559:+ chr3:142966908:+ chr3:142679492-142720401:+ chr3:142685750:+ chr3:143021984,chr3:143021984 chr3:142965343,chr3:142965340 NA NA chr3:142740826,chr3:142740826 chr3:142684185,chr3:142684182 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(12%)| RRM_1(2%)| 1 0 0 670 2 ENST00000473835.7 ENST00000593321.5 downstream upstream duplicates(1) CGAGGGGGTGTTGTTAATGCAGCTAAAG___AAGAACATGAAACAGATGAAAAAAGAGGTAAAATCTATAAGCCATCTTCAAGATTTGCAGATCAAAAAAATCC...TGATTACGCACCTGGCTCACATGATGTAGGAGATCCAAGCACTACTAATTTATACCTTGGAAACATTAATCCACAG|CCAGAAAACAACCAACTAAAGAAAG DYAPGSHDVGDPSTTNLYLGNINPQ|pennqlkk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1622 TBC1D16::ENSG00000262580 ENSG00000167291.16::ENSG00000262580.5 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D16 ENSG00000167291.16 protein_coding - - chr17:79932343-80035872:- chr17:80010160:- chr17:77906142-78009671:- chr17:77983959:- ENSG00000262580 ENSG00000262580.5 lncRNA - - chr17:80200673-80205949:- chr17:80201849:- chr17:78174472-78179748:- chr17:78175648:- chr17:79996684,chr17:79996689 chr17:80203699,chr17:80203701 NA NA chr17:77970483,chr17:77970488 chr17:78177498,chr17:78177500 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 2 0 0 107 29 ENST00000310924.7 ENST00000576824.5 upstream downstream none GCCAGCCTCGCAGCCTGCTTGCAGCCCCTCCGGGATCTTGTCGACGGTCAGTCCGCAGGATGTCACCGAGGAGGGaCGGGAGCCGCGGCCCGAGGCCGGGGAGGAGGATGGCTCTTTGGAACTGTCAGCCGAGGGCGTGAGCAGAGACAGCTCCTTTGACTCAGACTCAGACACCTTCTCCTCGC...TTCTGCCTCTCGCCCATCAGCGCGGCGCTGGCCGAGAGCCGCGGCTCCGTGTTTCTGGAAAGTGACAGCAG|ACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGC FCLSPISAALAESRGSVFLESDSr|qaaeavhppek NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1623 CARD14::TBC1D16 ENSG00000141527.19::ENSG00000167291.16 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CARD14 ENSG00000141527.19 protein_coding + + chr17:80169992-80216073:+ chr17:80203646:+ chr17:78143791-78189872:+ chr17:78177445:+ TBC1D16 ENSG00000167291.16 protein_coding - + chr17:79932343-80035872:- chr17:79997006:+ chr17:77906142-78009671:- chr17:77970805:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron duplication/5'-5' low none Caspase_recruitment_domain(100%)| CARD(100%)| 0 0 3 8 11 ENST00000703573.1 unknown downstream upstream duplicates(1) GGCTGCTCAACAGCACCCCCTGGGTCCCGCCCCAGGACAAGTAAATCAGCATCTCCAGGGGTGGGCCGAGGCCCTGGAGTCTTTTGAAAGCTCTGGAGACT...|...ATGATGCTGAACCAAAAAAAGTCCATCTCAAAGCTGACATCATGCAGGGTTCCAGTTACGTAAAATTCTTACAGAGGAGTGGTTGCCCTGTGCCAGGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1633 COMMD10::AP3S1 ENSG00000145781.9::ENSG00000177879.17 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 155 TRUE 264 TRUE 104 COMMD10 ENSG00000145781.9 protein_coding + + chr5:116085016-116412762:+ chr5:116092700:+ chr5:115420713-115748459:+ chr5:115428397:+ AP3S1 ENSG00000177879.17 protein_coding + + chr5:115841592-115914081:+ chr5:115895087:+ chr5:115177289-115249778:+ chr5:115230784:+ chr5:116108924,chr5:116108925 chr5:115873780,chr5:115873778 NA NA chr5:115444621,chr5:115444622 chr5:115209477,chr5:115209475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none COMM_domain(1%)|Clathrin_adaptor_complex_small_chain(38%) COMM_domain(0%)|Clat_adaptor_s(12%) 56 67 181 829 4281 ENST00000274458.9 ENST00000316788.12 downstream upstream duplicates(51),low_entropy(1),mismatches(41) CCCAG___CATGAAGAAAGCAGTGTCACTGATAAATGCAATAGATACAGGAAGATTTCCACGGTTGCTCACTCGGATTCTTCAAAAACTTCACCTGAAG___GCTGAGAGCAGTTTCAGTGAAGAAGAGGAAGAAAAACTTCAAGCGGCATTTTCTCTAGAGAAACAAGATCTTCACCTAGTTCTTGAAACAATATCATTTATTTTAGAACAG___GCAGTGTATCACAATGTGAAGCCAGCAGCTTTGCAGCAGCAATTAGAGAACATTCATCTTAGACAAGACAAAGCTGAAGCATTTGTCAATACtTGGTCTTCTATGGGTCAAGAAACAGTTGAAAAGTTCCGGCAGAGAATTCTGGCTCCCTGTAAG|GTATTTGTGGAAACATTAGACAAATGTTTTGAAAATGTCTGTGAGCTGGATTTGATTTTCCATGTAGACAAG___GTTCACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAATGAGATTGTTACACAAATTGATGCACAAAATAAGCTGGAAAAATCTGAG___GCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGATCCCAA PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCK|VFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Brain exact TRUE Bladder Urothelial Carcinoma,Brain Lower Grade Glioma,Brain Lower Grade Glioma,Bladder Urothelial Carcinoma BLADDER,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,BLADDER no_match 115428397,115428397,115428397,115428397 TRUE,TRUE,TRUE,TRUE 115230784,115230784,115230784,115230784 TRUE,TRUE,TRUE,TRUE YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1635 COMMD10::AP3S1 ENSG00000145781.9::ENSG00000177879.17 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 264 TRUE 104 COMMD10 ENSG00000145781.9 protein_coding + + chr5:116085016-116412762:+ chr5:116092700:+ chr5:115420713-115748459:+ chr5:115428397:+ AP3S1 ENSG00000177879.17 protein_coding + + chr5:115841592-115914081:+ chr5:115902885:+ chr5:115177289-115249778:+ chr5:115238582:+ chr5:116108924,chr5:116108925 chr5:115873780,chr5:115873778 NA NA chr5:115444621,chr5:115444622 chr5:115209477,chr5:115209475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none COMM_domain(1%)|Clathrin_adaptor_complex_small_chain(21%) COMM_domain(0%)|Clat_adaptor_s(0%) 1 2 76 829 4883 ENST00000274458.9 ENST00000316788.12 downstream upstream duplicates(8),mismatches(11) T...AAAAACTTCAAGCGGCATTTTCTCTAGAGAAACAAGATCTTCACCTAGTTCTTGAAACAATATCATTTATTTTAGAACAG___GCAGTGTATCACAATGTGAAGCCAGCAGCTTTGCAGCAGCAATTAGAGAACATTCATCTTAGACAAGACAAAGCTGAAGCATTTGTCAATACtTGGTCTTCTATGGGTCAAGAAACAGTTGAAAAGTTCCGGCAGAGAATTCTGGCTCCCTGTAAG|GTTCACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAATGAGATTGTTACACAAATTGATGCACAAAATAAGCTGGAAAAATCTGAG___GCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAG KLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCK|VHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Brain exact TRUE Bladder Urothelial Carcinoma,Brain Lower Grade Glioma,Brain Lower Grade Glioma,Bladder Urothelial Carcinoma BLADDER,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,BLADDER no_match 115428397,115428397,115428397,115428397 TRUE,TRUE,TRUE,TRUE 115230784,115230784,115230784,115230784 FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1636 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3889728:+ chr20:3869486-3910534:+ chr20:3870375:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Caspase_recruitment_domain(100%) |CARD_2(100%) 2 26 14 91 294 ENST00000316562.9 ENST00000428216.4 downstream upstream duplicates(5),mismatches(6) GGCGAGCAGCGCGTCGGTGCCCGCGGTCGGGGCCTCGGCTGAGGGCACGAGGCGGGATCGACTGGGCTCTTACAGCGGCCCCACCTCGGTCTCCCGCCAGCGCGTCGAAAGCCTGAGGAAAAAGCGGCCGC|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGACCAG___GATCGACTGCGGGCCACCTGCACACTCTCAGGGAACCGGGACACCCTCTGGCATCTCTTCAATACCCTTCAGCGGCGGCCCGGCTGGGTGGAGTACTTCATTGCGGCACTGAGGGGCTGTGAGCT...GTTGATCTCGCGGA...___GGACCTCGGACCGTCCCC ASSASVPAVGASAEGTRRDRLGSYSGPTSVSRQRVESLRKKRP|lsfplspstlhgaralspeseqqcrllktrpisisaaisaifamwml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1637 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 156 TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3891411:+ chr20:3869486-3910534:+ chr20:3872058:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site duplication high none |Caspase_recruitment_domain(100%) |CARD_2(100%) 3 2 22 21 294 ENST00000643504.2 ENST00000428216.4 downstream upstream duplicates(4),mismatches(1) GCaGGATCGACTGGGCTCTTACAGCGGCCCCACCTCGGTCTCCCGCCAGCGCGTCGAAAGCCTGAGGAAAAAGCGGCCGC___AGATGGGATCTCTTATGTTGCCCAGGCTGGTCTTGAATTCCTCCTGGTCTCAAGCGATCTTCCCACTTCGGCCTCCCAAAGTGCTGGGATATA...AGCCATTGTGCCCGACCTGGCAGTCGTCTACTAAGAGCTTTGGTAACTCATTAGCCTCGTGGCTCTGAG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGACCAG___GATCGACTGCGGGCCACCTGCACACTCTCAGGGAACCGGGACACCCTCTGGCATCTCTTCAATACCCTTCAGCGGCGGCCCGGCTGGGTGGAG...___GGACCTCGGACCGTCCCCCAGACCCACTGGAGCCACCGTCACTTCCTGCTGAGAGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1638 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 157 TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3889932:+ chr20:3869486-3910534:+ chr20:3870579:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Caspase_recruitment_domain(100%) |CARD_2(100%) 1 6 17 59 294 ENST00000621507.1 ENST00000428216.4 downstream upstream duplicates(4) CGCCGCCGTTTTTCCCGCGCGCGGACACTGTCCCCGCACGGTGGTCCCTCGTTGGTGCGTGGCCTGACATCCGGCTGGAGGCCTCGGGTGCTCCGAAAGCGGTACCTTCGGGGGCCCCCCCGCACCCATTG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCCGTTTGCTGAAGACAAGACCTATAAGTATATCTGCCGCAATTTCAGCAATTTTTGCAATGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGACCAG___GATCGACTGCGGGCCACCTGCACACTCTCAGGGAACCGGGACACCCTCTGGCATCTCTTCAATACCCTTCAGCGGCGGCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1639 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3889728:+ chr20:3869486-3910534:+ chr20:3870375:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3861332:+ chr20:3827446-3856770:+ chr20:3841979:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 0 2 1 91 444 ENST00000316562.9 ENST00000428216.4 downstream upstream duplicates(1) GCGGTCGGGGCCTCGGCTGAGGGCACGAGGCGGGATCGACTGGGCTCTTACAGCGGCCCCACCTCGGTCTCCCGCCAGCGCGTCGAAAGCCTGAGGAAAAAGCGGCCGC|GGACCTCGGACCGTCCCCCAGACCCACTGGAGCCACCG...GTCCCCAGGAGAG___AATTCAGAGCAAGCCCTGCAGACGCTCAGCCCCAGAGCCATCCCAAGGAATCCAGATGGTGGCCCCCTGGAGTCCTCCTCTGACCTGGCAGCCCTCAGCCCTCTGACCTCCAGCGGGCATCAGGAGCAGG AVGASAEGTRRDRLGSYSGPTSVSRQRVESLRKKRP|rTSDRPPDPLEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1640 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3891411:+ chr20:3869486-3910534:+ chr20:3872058:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3862254:+ chr20:3827446-3856770:+ chr20:3842901:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none none none 1 0 1 21 444 ENST00000643504.2 ENST00000416600.6 downstream upstream duplicates(1) TCGGTGCCCGCGGTCGGGGCCTCGGCTGAGGGCACGAGGCGGGATCGACTGGGCTCTTACAGCGGCCCCACCTCGGTCTCCCGCCAGCGCGTCGAAAGCCT...ACTCATTAGCCTCGTGGCTCTGAG|AATTCAGAGCAAGCCCTGCAGACGCTCAGCCCCAGAGCCATCCCAAGGAATCCAGATGGTGGCCCCCTGGAGTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1641 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3888904:+ chr20:3869486-3910534:+ chr20:3869551:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |Caspase_recruitment_domain(100%) |CARD_2(100%) 0 1 0 11 294 ENST00000497424.5 ENST00000428216.4 downstream upstream none CGGAACTAGGCCGAGGGACAAAGGCTAAG|TCTCGTTTCCTCTCAGTCCATCCACCCTTCATGGGGCCAGAGCCCTCTCTCCAGAATCTGAGCAGCAATGCC...TGCCGCAATTTCAGCAATTTTTGCAgTGTGGATGTTGTAGAGATTCTGCCTTACCTGCCCTGCCTCACAGCAAGAGACCAG___GATCGACTGCGGGCCACCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1642 SND1::ZNF800 ENSG00000197157.11::ENSG00000048405.11 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SND1 ENSG00000197157.11 protein_coding + + chr7:127652194-128092609:+ chr7:127698953:+ chr7:127292248-127732661:+ chr7:127339007:+ ZNF800 ENSG00000048405.11 protein_coding - + chr7:127346790-127431924:- chr7:127405119:+ chr7:126986844-127071978:- chr7:127045173:+ chr7:127700327,chr7:127700327 chr7:127402306,chr7:127402303 NA NA chr7:127340381,chr7:127340381 chr7:127042360,chr7:127042357 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Staphylococcal_nuclease_homologue(18%)| SNase(0%)| 3 23 15 1065 36 ENST00000354725.8 unknown downstream upstream duplicates(5) TCGCCGGGCAGCCGCCACACAACCTGATGCAAAGGATACCCCTGATGAG___CCCTGGGCATTTCCAGCTCGAGAGTTCCTTCGAAAGAAGCTGATTGGGAAGGAAGTCTGTTTCACGATAGAAAACAAGACTCCCCAGGGGCGAGAGTATGGCATGATCTACCTTGGAAAAG___ATACCAATGGGGAAAACATTGCAGAATCACTGGTTGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAGAGCTAATAA|TCTTAAGAAACTCATCTTGAACACACAACCCAGCCAAATGAATGAAGATAGAAAATAACGCTCAAGTCAGCTAG___TGCTGCAAGCTTCACGGGCTGGCTGTCACACAAGAAAAGGACATTTTCTCTGCACTATGGCAGGCGCGATGATCTCAG___ATTCCCAGAGCCAGTGAACACCAGAAACTTGGATTCAAACTCT RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANn|lkklilntqpsqmnedrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE staphylococcal nuclease and tudor domain containing 1 1 pancreas acinar carcinoma epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1647 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 267 TRUE 106 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72552837,chr17:72552842 chr17:72723052,chr17:72723051 NA NA chr17:70548977,chr17:70548982 chr17:70719191,chr17:70719190 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(34%) |Zip(0%) 3 8 17 183 315 ENST00000648631.1 ENST00000255559.8 upstream downstream duplicates(6) CCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCCCTACGCTCTGGCCTTTGCTGCCGGTGCCATGGTCTACGTGGTCATGGACGACATCATCCCCGAAGCCCAGATCAG___TGGTAATGGGAAACTGGCATCCTGGGCCTCCATCCTGGGATTTGTAGTGATGATGTCACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1648 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 158 TRUE 267 TRUE 106 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72712981:- chr17:70642088-71088851:- chr17:70709120:- chr17:72552837,chr17:72552842 chr17:72723052,chr17:72723051 NA NA chr17:70548977,chr17:70548982 chr17:70719191,chr17:70719190 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(34%) |Zip(14%) 1 1 17 183 29 ENST00000648631.1 ENST00000581581.1 upstream downstream duplicates(3) CCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GGTCTTGAACTTGGTTTCCTGCCCTGGACTTAACCTGCCTTCCTGACACCGACTGACTTCAC...TCTCCCCATGCCCTCATGTCATGTCTTATCTGTTCCTATTGTGGATCCGGGATTCCTTGGCCTGTCCCTTGGCCTGCTGCTGATCATATCTCCACTCTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1660 MCMBP::SEC23IP ENSG00000197771.13::ENSG00000107651.15 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCMBP ENSG00000197771.13 protein_coding - - chr10:119829404-119892556:- chr10:119840843:- chr10:121588916-121652068:- chr10:121600355:- SEC23IP ENSG00000107651.15 protein_coding + - chr10:119892707-119944657:+ chr10:119906108:- chr10:121652219-121704169:+ chr10:121665620:- chr10:119840391,chr10:119840393 chr10:119908933,chr10:119908932 NA NA chr10:121599903,chr10:121599905 chr10:121668445,chr10:121668444 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Mini-chromosome_maintenance_replisome_factor(63%)| MCM_bind(67%)| 3 1 14 2820 48 ENST00000369077.4 unknown upstream downstream duplicates(3),mismappers(2),mismatches(1) CACAGTCCTCCTGCTTCATTAGTGCCGAGAATTCATGTGATCTTAGCCCAGAAGTTGCAACACATCAACCCATTATTGCCTGCCTGCCTTAACAAAGAGGA...AAAACCT___TTGTTTCAAGTTTCATGTCCGAATTGTCTCCAGTCAGAGCAGAACTTCTTGGGTTCCTTACTCATGCCCTTCTGGGGGATAGTTTGGCTGCTGAATACCTTATATTACATCTCATCTCCACAGT___ATATACAAGAAGAGATGTCCTTCCACTAGGAAAATTTACAGTTAACTTGAGTGGTTGCCCACGGAATAGTACCTTCACAGAACACTTGTATCGAATTATTCAACATCTTGTTCCAGCA|AGACGGGGTTTTTCCATGTTGTCCAGGCTGGTCTGGAACTCCTGAGCTGAAGCAACCCACCCACCTTGGCCTCCCAGAGTGCTGGGATTACAGGCAGGAGCCACCACGCCCAGCCTAGCTCCATTTCTTGAGGTCACCTTTTACGTTCTTCAGTGTTCCATAAAGTTTACCGGTACTTTTCTTGGGCTTTTTTCCTACATTGCCTGTAGTTTTATAAATATATAGTCTCTCTGTTATAAATACATAGTATCTTCTTTTTCTATTTTTAATTGGT KTFVSSFMSELSPVRAELLGFLTHALLGDSLAAEYLILHLISTVYTRRDVLPLGKFTVNLSGCPRNSTFTEHLYRIIQHLVPA|rrgfsmlsrlvwns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1694 ENSG00000267127::ATR ENSG00000267127.7::ENSG00000175054.16 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267127 ENSG00000267127.7 protein_coding + + chr18:80034346-80097088:+ chr18:80034653:+ chr18:77794346-77854968:+ chr18:77794653:+ ATR ENSG00000175054.16 protein_coding - + chr3:142449007-142578733:- chr3:142484366:+ chr3:142167849-142297575:- chr3:142203208:+ chr18:80036142,chr18:80036143 chr3:142477618,chr3:142477616 NA NA chr18:77796142,chr18:77796143 chr3:142196460,chr3:142196458 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 105 78 98 423 193 ENST00000569722.5 unknown downstream upstream duplicates(30),low_entropy(1),mismatches(17) CCGGGTCCCGGCGCCGCGCCATGTGGGCTGCGGCGGGCGGGCTGTGGCGCTCCCGCGCGGGTCTCCGGGCCCTGTTCCGTAGCCGCGATGCTGCGCTATTTCCAGGCTGCGAGCGGGGACTTCACTGCTCTGCTGTCTCCTGCAAGAACTGGCTCAAGAAATTTGCCTCGAAAACCAA|GACAGAGTTTGGAGAGCTTCCAGAGAGtTGAACACGTGGAGGCTGACAGGAGGGTGAAGAAGACCTCATCCACGTGCCAGGAGGATGGCACAGCCCATCTCCATGGAGACAGAAGCTCCTGTGCCGGACCCCTCCAGACCTCACCCTACCTATCTCTTCATCAGACTGTTTATTTG MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTk|tefgelpes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1695 RBFA::ATR ENSG00000101546.13::ENSG00000175054.16 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBFA ENSG00000101546.13 protein_coding + + chr18:80034389-80050651:+ chr18:80034653:+ chr18:77794389-77810651:+ chr18:77794653:+ ATR ENSG00000175054.16 protein_coding - + chr3:142449007-142578733:- chr3:142484366:+ chr3:142167849-142297575:- chr3:142203208:+ chr18:80036142,chr18:80036143 chr3:142477618,chr3:142477616 NA NA chr18:77796142,chr18:77796143 chr3:142196460,chr3:142196458 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 105 78 98 423 193 ENST00000306735.10 unknown downstream upstream duplicates(30),low_entropy(1),mismatches(17) CCGGGTCCCGGCGCCGCGCCATGTGGGCTGCGGCGGGCGGGCTGTGGCGCTCCCGCGCGGGTCTCCGGGCCCTGTTCCGTAGCCGCGATGCTGCGCTATTTCCAGGCTGCGAGCGGGGACTTCACTGCTCTGCTGTCTCCTGCAAGAACTGGCTCAAGAAATTTGCCTCGAAAACCAA|GACAGAGTTTGGAGAGCTTCCAGAGAGtTGAACACGTGGAGGCTGACAGGAGGGTGAAGAAGACCTCATCCACGTGCCAGGAGGATGGCACAGCCCATCTCCATGGAGACAGAAGCTCCTGTGCCGGACCCCTCCAGACCTCACCCTACCTATCTCTTCATCAGACTGTTTATTTG MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTk|tefgelpes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1696 RAB10::KIF3C ENSG00000084733.11::ENSG00000084731.15 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB10 ENSG00000084733.11 protein_coding + + chr2:26034084-26137454:+ chr2:26034735:+ chr2:26256953-26360323:+ chr2:26257604:+ KIF3C ENSG00000084731.15 protein_coding - + chr2:25926598-25982749:- chr2:25943184:+ chr2:26149467-26205618:- chr2:26166053:+ chr2:26040884,chr2:26040880 chr2:25930194,chr2:25930187 NA NA chr2:26263753,chr2:26263749 chr2:26153063,chr2:26153056 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(20%)| Arf(0%),Gtr1_RagA(0%),Ras(0%),Roc(0%)| 22 31 25 1566 86 ENST00000264710.5 unknown downstream upstream duplicates(4),mismappers(1),mismatches(5) CCCGAGTGAGGAGTTGGCCGTAGTGAGAGGGACCGATCCCTTGGGGCCGCCGGCGGCGAGAGCCCGAGCCGCTCCTCCCAATGGCGAAGAAGACGTACGACCTGCTTTTCAAGCTGCTCCTGATCGGGGATTCCGGAGTGGGGAAGACCTGCGTCCTTTTTCGTTTTTCGGATGATGCCTTCAATACTACCTTTATTTCCACCATAG|CCCTAATTAAGTGATGCGGCAAGTGGTGGGATCCAATGCTGAAGAAAGGACCTTTTCTCTGGGGAGTGGAGAAGTTTGCTTCACAGCTGCAGCCTCAGACCCCATGGTTCCTGAAATGAGGAAAGCTGCCTTGTTCAAGGACCTCCCTGCCCTCAACCTTCTGTGGTGAAATGAGGGACATGGGGCAGATGACCTCAGAGATCCAGGCCAGCAGCTCCCTGCCCC MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTI|alik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1699 TAF3::GATA3 ENSG00000165632.9::ENSG00000107485.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TAF3 ENSG00000165632.9 protein_coding + + chr10:7818497-8016631:+ chr10:7977323:+ chr10:7860460-8058594:+ chr10:8019286:+ GATA3 ENSG00000107485.18 protein_coding + + chr10:8045378-8075198:+ chr10:8069473:+ chr10:8087341-8117161:+ chr10:8111436:+ chr10:8002406 chr10:8066481 NA NA chr10:8044369 chr10:8108444 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Bromodomain_associated(100%)|GATA_zinc_finger(49%) Bromo_TP(100%)|GATA(49%) 20 11 12 58 48 ENST00000344293.6 ENST00000379328.9 downstream upstream duplicates(1),low_entropy(2),mismatches(2) GCCATGCTGCCATCTTTGTTGCCAGTGCTTCCGGAAAAACTGTTTGAGGAGAAAGAGAAGccGAAGGAGAAAGAAAAGAAAAAGGACAAAAAGGAGAAGAAGAAAAAGAAGGAAAAAGAGAAGGAGAAGAAGGAGAAGGAAAGAGAGAAAGAGAAGAGAGAGCGAGAGAAGAGAGAAAAAGAGAAGGAGAAACACAAGCATGAAAAA___ATAAAAGTGGAACCAGTCGCTCTGGCCCCGAGTCCAGTTATCCCCAGATTAACTCTCCGAGTCGGTGCTGGCCAAGACAAGAT|TCTGCAGCCAGGAGAGCAGGGACGTCCTGTGCGAACTGTCAGACCACCACAACCACACTCTGGAGGAGGAATGCCAATGGGGACCCTGTCTGCAATGCCTGTGGGCTCTACTACAAGCTTCACAAT___ATTAACAGACCCCTGACTATGAAGAAGGAAGGCATCCAGACCAGAAACCGAAAAATG AMLPSLLPVLPEKLFEEKEKpKEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKi|lqpgeqgrpvrtvrppqphsgggmpmgtlsampvgsttsftiltdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE GATA binding protein 3 1 Yes breast epithelial oncogene, TSG frameshift, nonsense, splice_site 1703 PPP2CB::TEX15 ENSG00000104695.13::ENSG00000133863.9 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 162 FALSE NA FALSE NA PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30812320:- chr8:30631973-30671830:- chr8:30669836:- TEX15 ENSG00000133863.9 protein_coding - - chr8:30831544-30913008:- chr8:30849316:- chr8:30689060-30770524:- chr8:30706832:- chr8:30806225 chr8:30854748 NA NA chr8:30663741 chr8:30712264 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Testis_expressed_sequence_15(100%) |TEX15(100%) 14 11 11 1019 33 ENST00000221138.9 ENST00000643185.2 upstream downstream duplicates(1),mismatches(2) CGGCCGGGCTGGGGCTCGGGATCCGCATCGGGATCGGGCCGCCATGGACGACAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTGCGAGAAG|AAAGGACATGCTCTCTGAATAACTGTACAGTGGCCAAAAGATTTGGAAAAGGAAAAGATGCTACTGTCACCTTTGTGCATTTCAAGAAACCTGTAGATCCATTTGTTCAAGAAAACTGTTTATGCAATGCACTAAATTCAGAGATAAATCCTTTCATCTCAAATATTTCTAACTCCTATGGAAATGTACAAAATGGAAACATTTCTATACCTGAAACATACAGTGGA MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEK|kghal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1704 PPP2R3A::GCNT2 ENSG00000073711.11::ENSG00000111846.20 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 163 TRUE 275 TRUE 107 PPP2R3A ENSG00000073711.11 protein_coding + + chr3:135965728-136147894:+ chr3:135965849:+ chr3:135684570-135866736:+ chr3:135684691:+ GCNT2 ENSG00000111846.20 protein_coding + + chr6:10492223-10629368:+ chr6:10527474:+ chr6:10492456-10629601:+ chr6:10527707:+ chr3:135975734 chr6:10519415 NA NA chr3:135694576 chr6:10519648 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |Core-2/I-Branching_enzyme(100%) |Branch(100%) 6 25 4 56 80 ENST00000264977.8 ENST00000495262.7 downstream upstream duplicates(5),mismatches(3) CCTCCGCTCTTCACGCGCCGCATTCGTAGCCCGAGAGTCCGCGCCGCGGGGAGGCTTGGAGGCAAGCGCTGCCCGCGAGCTGAGCCGCCGGAGGAGGAGCCGCGGGCAACGAG|ACAATGCTAGGAGCCAGAAACATGAGGAATACATGAGCTCGGCGCCAATGGAACATGCTTTCACACCGGGTGCAGCTAACCACCACATCATACAAAACTCGTCGCTGACGTTTTAGATGTATAATCTGATTGGCATGGACTCACAGAGGAGGGAGTAAGGGAAGAGTAAGAAGATTTCAAAGGAGAG___ACACAGGTTGCAGGTTAGCAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1705 PPP2R3A::GCNT2 ENSG00000073711.11::ENSG00000111846.20 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 275 TRUE 107 PPP2R3A ENSG00000073711.11 protein_coding + + chr3:135965728-136147894:+ chr3:135965849:+ chr3:135684570-135866736:+ chr3:135684691:+ GCNT2 ENSG00000111846.20 protein_coding + + chr6:10492223-10629368:+ chr6:10621351:+ chr6:10492456-10629601:+ chr6:10621584:+ chr3:135975734 chr6:10519415 NA NA chr3:135694576 chr6:10519648 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Core-2/I-Branching_enzyme(7%) |Branch(5%) 2 5 1 56 58 ENST00000264977.8 ENST00000410107.5 downstream upstream duplicates(1),mismappers(1),mismatches(2) GCGCGCTCGGGCCTCCGCTCTTCACGCGCCGCATTCGTAGCCCGAGAGTCCGCGCCGCGGGGAGGCTTGGAGGCAAGCGCTGCCCGCGAGCTGAGCCGCCGGAGGAGGAGCCGCGGGCAACGAG|GTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTCAGAGCTATAAAGTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACG___GCCACTATGTACATGGTATTTGTATCTATGGAAACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCTACCCCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1706 PPP2R3A::GCNT2 ENSG00000073711.11::ENSG00000111846.20 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 275 TRUE 107 PPP2R3A ENSG00000073711.11 protein_coding + + chr3:135965728-136147894:+ chr3:135965849:+ chr3:135684570-135866736:+ chr3:135684691:+ GCNT2 ENSG00000111846.20 protein_coding + + chr6:10492223-10629368:+ chr6:10528631:+ chr6:10492456-10629601:+ chr6:10528864:+ chr3:135975734 chr6:10519415 NA NA chr3:135694576 chr6:10519648 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |Core-2/I-Branching_enzyme(100%) |Branch(100%) 0 2 1 56 169 ENST00000264977.8 ENST00000495262.7 downstream upstream mismatches(1) CGGGCCTCCGCTCTTCACGCGCCGCATTCGTAGCCCGAGAGTCCGCGCCGCGGGGAGGCTTGGAGGCAAGCGCTGCCCGCGAGCTGAGCCGCCGGAGGAGGAGCCGCGGGCAACGAG|ACACAGGTTGCAGGTTA...ACAGGCAAGCCAAATGCAAAGGAGCCACTTCAGAAATGTGTCACAGAAAAGTGAAAATGCAACCTAGTGGTAAGTGAAGAGGGGAAGAAGAAAGAAAAAG...TGAACTGAAGGGACAGGGAACAGCCAGACGAGAGCTTCAGCCATCACGAGGATGATTTCGGAACCTGGAGAAAATGTAAGTTAAATATATCTACACTCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1707 TOR1AIP1::LINC01720 ENSG00000143337.19::ENSG00000231175.1 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOR1AIP1 ENSG00000143337.19 protein_coding + + chr1:179882042-179920077:+ chr1:179884769:+ chr1:179851177-179889212:+ chr1:179853904:+ LINC01720 ENSG00000231175.1 lncRNA + - chr1:190624890-190801658:+ chr1:190659873:- chr1:190594020-190770788:+ chr1:190629003:- chr1:179885858,chr1:179885857 chr1:190661559,chr1:190661560 NA NA chr1:179854993,chr1:179854992 chr1:190630689,chr1:190630690 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 5 14 15 301 42 ENST00000606911.7 unknown downstream downstream duplicates(4),mismappers(8),mismatches(2) AGCGGAGGCAGCCGCGACCCCAGGAAACCGAGGAAATGAAGACGCGAAGGACTACCCGCCTTCAGCAGCAGCACTCAGAGCAGCCTCCGCTACAGCCGTCTCCTGTTAcGACCAGGAGAGGGCTGCGGGACTCTCATTCCTCTGAAG___AGGATGAAGCATCTTCCCAAACTGATTTAAGCCAAACGATCTCAAAGAAAACTGTCAGGAGCATACAAGAGGCTCCAG|AGTCTCGCTATGTTGCCCATGCTGGAGTGTAGTGGCGCGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTCTGCTGCCTCCGGAATACCTGGGACTACAGGCGTAAGCCACCACGCCCGGCTAATTTTTGTTTTTAGTAGCGACGGTGTTTGACCATATTGGCCAGGCTGGTCTTCAACTCCTGACCTCATGGTCCGCCCTCCTCGGCCTCCCAAAGTGCTGAGATTACAGTTGTGAGCCACCGCC RRQPRPQETEEMKTRRTTRLQQQHSEQPPLQPSPVtTRRGLRDSHSSEEDEASSQTDLSQTISKKTVRSIQEAP|esryvahagv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1710 NFKBIL1::ENSG00000289406 ENSG00000204498.11::ENSG00000289406.1 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFKBIL1 ENSG00000204498.11 protein_coding + + chr6:31546870-31558829:+ chr6:31548439:+ chr6:31514647-31526606:+ chr6:31516216:+ ENSG00000289406 ENSG00000289406.1 lncRNA - - chr6:31560244-31572700:- chr6:31560722:- chr6:31528021-31540477:- chr6:31528499:- chr6:31555231,chr6:31555232 chr6:31561481,chr6:31561480 NA NA chr6:31523008,chr6:31523009 chr6:31529258,chr6:31529257 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ankyrin_repeats_(many_copies)(100%)| Ank_4(100%),V-ATPase_G(100%)| 10 8 14 300 94 ENST00000376148.9 ENST00000691266.1 downstream downstream mismatches(4) CCCCCAGGTTCCAGAGGAAGAAGCCTCCACATCTGTCTGCCGG___CCCAAGAGTTCCATGGCCTCCACTTCCCGCCGCCAACGCCGAGAACGTCGCTTTCGTCGTTACTTGTCTGCAGGACGGCTGGTCCGGGCCCAGGCCCTCCTCCAGCGACACCCAGGCCTCGATGTAGATGCTGGGCAGCCCCCACCACTGCACCGGGCCTGTGCCCGCCACGATGCCCCTGCCCTGTGCCTGCTGCTTCGGCTCGGGGCTGACCCTGCCCACCAGGACCGCCATGGGGACACGGCACTGCATGCTGCTGCCCGCCAGGGCCCAGATG|GCCTGTTCCTCCAATTGAATCCCAATGCATCCTCCACTGAGACTCAACTCCTGGTGCCAGCTCTAGAGAGCAGAGATACACTTCCACCTACCCACTGTTTCATGGCAGGCACTGAGTCACCCCTTGGGAATCCCTGGCCCCTGTCCCTGCCCCCACCATGCTGGACAGGATGCCTGCTGCCTGCCCCAAGGGGTCAGAGGAAGCCAGGGCCTCTAGGGCTCAGTATTTTTATCAGCCTAGGAAACAAGAGACACAGAAGCGGAAACCATGTGGTCAGAGA PQVPEEEASTSVCRPKSSMASTSRRQRRERRFRRYLSAGRLVRAQALLQRHPGLDVDAGQPPPLHRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPD|glflqlnpnasstetqllvpalesrdtlppthcfmagtesplgnpwplslpppcwtgcllpaprgqrkpgplglsifislgnkrhrsgnhvvr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1713 SYK::ROR2 ENSG00000165025.15::ENSG00000169071.15 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 278 TRUE 108 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90845594:+ chr9:93564069-93660831:+ chr9:93607876:+ ROR2 ENSG00000169071.15 protein_coding - - chr9:91563091-91950228:- chr9:91631904:- chr9:94325373-94712510:- chr9:94394186:- chr9:90851296 chr9:91667476 NA NA chr9:93613578 chr9:94429758 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none SH2_domain(66%)| SH2(1%)| 2 5 5 391 5 ENST00000375751.8 unknown downstream downstream none GGTCAGGCTCTGGAGCAGGCCATCATCAGTCAGAAGCCTCAGCTGGAGAAGCTGATCGCTACCACAGCCCATGAAAAAATGCCTTGGTTCCATGGAAAAATCTCTCGGGAAGAATCTGAGCAAATTGTCCTGATAGGATCAAAGACAAATGGAAAGTTCCT|ACAAGGAATTGGCAAGCTGTACTTGGAGGAGCCTGGGGCCTGGACTGTTGGAGAAGGGTTTGTGCTGAAGGCAGGACCTTGAAAGAAAGAGAGAAAGGAAGATCCAAACTAAGGAAATGGCAGGAGGAAAAAGGCAGAGACAAAAATCTGAACATCAGACAGAGAGAGAGCCCAATGGTATACGTTTGGAGGGTCAGACAGAAACTTTTTACTTGCTGAGAGAGTTTGG...GATGTGCATGGTGTTCATTAGATTATGTGAAATGACGGCTATTACTATAATGAGGCATGGTTAGAGCAACACAGAGACCAGCCTGGCTGAGAAAAAAGgCG GQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFl|qgigklyleepgawtvgegfvlkagp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase SYK TK Syk P43405 TRUE FALSE Tyrosine-protein kinase transmembrane receptor ROR2 TK Ror Q01974 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1714 SYK::ROR2 ENSG00000165025.15::ENSG00000169071.15 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 278 TRUE 108 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90845594:+ chr9:93564069-93660831:+ chr9:93607876:+ ROR2 ENSG00000169071.15 protein_coding - - chr9:91563091-91950228:- chr9:91563329:- chr9:94325373-94712510:- chr9:94325611:- chr9:90851296 chr9:91667476 NA NA chr9:93613578 chr9:94429758 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion high none SH2_domain(66%)| SH2(1%)| 4 5 1 391 28 ENST00000375751.8 ENST00000375715.5 downstream downstream duplicates(2) AACtTcCtG___GGTCAGGCTCTGGAGCAGGCCATCATCAGTCAGAAGCCTCAGCTGGAGAAGCTGATCGCTACCACAGCCCATGAAAAAATGCCTTGGTTCCATGGAAAAATCTCTCGGGAAGAATCTGAGCAAATTGTCCTGATAGGATCAAAGACAAATGGAAAGTTCCT|ATTCAGCATTCCCATATTTGAAATGGGAAGAAGTTTCATGTCCATTCTGGCTTCATGTGGTTGGAAGAGGAAGCCCCATGAATATTTTTATGGATGCCCCAGTGCTGTTGAGTGCCTATCAACACCACCACGAGCTTGGCCACTTCACATCAACAGCAGATTTAATTTGGGA NflGQALEQAIISQKPQLEKLIATTAHEKMPWFHGKISREESEQIVLIGSKTNGKFl|fsipifemgrsfmsilascgwkrkpheyfygcpsaveclstpprawplhinsrfnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase SYK TK Syk P43405 TRUE FALSE Tyrosine-protein kinase transmembrane receptor ROR2 TK Ror Q01974 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1726 NEK7::SYK ENSG00000151414.15::ENSG00000165025.15 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 168 FALSE NA FALSE NA NEK7 ENSG00000151414.15 protein_coding + + chr1:198156994-198322420:+ chr1:198157276:+ chr1:198126124-198291550:+ chr1:198126406:+ SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90845434:+ chr9:93564069-93660831:+ chr9:93607716:+ chr1:198181452,chr1:198181451 chr9:90844590,chr9:90844586 NA NA chr1:198150582,chr1:198150581 chr9:93606872,chr9:93606868 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(100%),SH2_domain(49%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(98%) 6 3 1 128 429 ENST00000367385.9 ENST00000375751.8 downstream upstream none GCCGACAGGCTCCGGGCCTCGCAGCCTCAGCCCCCGGCCCAGCGCGCTTTCCGACGGCGGCGCCGCGCCGAGCCACCCGCCCGCCCAAGGTCTCTCGCGGGCGGGAGAACGGAAAACTCCCAACTTCCTG|GGTCAGGCTCTGGAGCAGGCCATCATCAGTCAGAAGCCTCAGCTGGAGAAGCTGATCGCTACCACAGCCCATGAAAAAATGCCTTGGTTCCATGGAAAAATCTCTCGGGAAGAATCTGAGCAAATTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek7 Other NEK Q8TDX7 TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation 1728 AGPS::HNRNPA3 ENSG00000018510.18::ENSG00000170144.22 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 283 FALSE NA AGPS ENSG00000018510.18 protein_coding + + chr2:177392746-177567024:+ chr2:177420358:+ chr2:178257474-178431752:+ chr2:178285086:+ HNRNPA3 ENSG00000170144.22 protein_coding + + chr2:177212694-177223959:+ chr2:177222060:+ chr2:178077422-178088687:+ chr2:178086788:+ chr2:177426876,chr2:177426877 chr2:177219763,chr2:177219761 NA NA chr2:178291604,chr2:178291605 chr2:178084491,chr2:178084489 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none none Trypan_glycop_C(100%)| 2 3 3 391 739 ENST00000679459.1 ENST00000679159.1 downstream upstream inconsistently_clipped(1),low_entropy(2),mismatches(1),multimappers(1) CAGCGGACCGGGACCGGGACCCGGACCCGGACCGCGCCGGGCGGAGGCTGCGGGTTCTCTCTGGCCATCTGCTGGGCCGGCCCCGGGAGGCTCTGAGTACCA...CGCGGAGAGCCGCGTCGGCGGCCACGGCAGCGCCCACGGCCACTCCCGCCGCGCAGGAGTCGGGCACCATCCCAAAGAAGCG___GCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCTAAATTCATCTTCAATAAGAAGGGCCAAATTGAATTGACTGGGAAAAG|GTTGAATGAGAACCCTACTTGCCTAAATGAGGAATGTCTTTCCTACCATCTAAAATACGAAGGTTTCTGGCTGGGTAAGGTTTGTAGTTGACAGTAAAACCTGATGACACCATTTGTTTCCCTGCAAGTCTACATTACATATTTCACAACTTTGTCCCTCTCTAGTAGGCACATTGGAAAAATTCTTCAACTGAAAACTACCTTGGTACCATGTCCTACACGTTTTAAACCTTAGTTTTAAAAATTCCCCTGCGAAAT RRAASAATAAPTATPAAQESGTIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKr|lnenptclneeclsyhlkyegfwlgkvcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1732 DOCK4::CALN1 ENSG00000128512.24::ENSG00000183166.12 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:112206102:- chr7:111366166-111846462:- chr7:111846157:- CALN1 ENSG00000183166.12 protein_coding - - chr7:71779491-72447151:- chr7:72106294:- chr7:71244476-71912136:- chr7:71571279:- chr7:112096006,chr7:112096001,chr7:112095999 chr7:72245030,chr7:72245030,chr7:72245030 NA NA chr7:111736061,chr7:111736056,chr7:111736054 chr7:71710015,chr7:71710015,chr7:71710015 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Variant_SH3_domain(6%)|EF-hand_domain_pair(97%) SH3_2(0%)|EF-hand_1(0%),EF-hand_5(100%),EF-hand_6(0%),EF-hand_7(32%),EF-hand_8(32%) 1 3 2 14 6 ENST00000437633.6 ENST00000395276.6 upstream downstream duplicates(1) GGGAGCGCGTCGGAGGACTGTGAGCAGCCGCCGCCGGGAGAGCTGCGGGCGGCGCAGTGTCAACGCTGGGCTCGGGAGCCTCCAGCGCAGATCCTGCCCAGCGCCCGCAGCCCGCGCGAAGCCGCTGGGCTCCGGCACTGCAGCGCTGCTCGGGGACTGTGCATTGTTGTGAGCCGGAGAAGGGGCGCGGGGATTACAAAGCCTGAAGACCCCGGAGCCCCTTTAGCCATGTGGATACCTACGGAGCACGAGAAATACGGCGTGG|AAATCCGAGAGGCCTTTCGGGTTCTGGACCGGGATGGGAACGGCTTCATCTCCAAGCAGGAGCTGGGCATGGCCATGCGCTCTTTGGGGTACATGCCAAGCGAGGTGGAGCTGGCCATCATCATGCAGCGCTTGGACATGGACG___GGGATGGCCAGGTGGATTTTGATGAATTCATGACCATTCTTGGCCCCAAACTGGTGTCTTCAGAAGGTCGCGATGGTTTTCTTGGGAACACGATAGACAGCATATTCTGGCAG___GCTGTACGGGAAGCATGA MWIPTEHEKYGV|eIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQavrea NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1735 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90801893:+ chr9:93564069-93660831:+ chr9:93564175:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200948092:+ chr1:200886588-200935796:+ chr1:200917220:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 4 1 273 15 ENST00000375751.8 ENST00000435735.2 downstream upstream low_entropy(1) CGACACTGGGAGGAAGTGCGGGCCGCCTGCCCGGGCGCGTTAAGGAAGTTGCCCAAAATGAGGAAGAGCCGCGGGCCCGGCGGCTGAGGCCACCCCGGCGGCGGCTGGAGAGCGAGGAGGAGCGGGTGGCCCCGCGCTGCGCCCGCCCTCGCCTCACCTGGCGCAG|GGGGGTTTGCAAACCCTGGGAAATCCTGGCATCCTTCCCCAAAGGCTACGAAATGATCGTGGACTACCTGCTTCAGAGGCTGAtTCCACACTGGAGGCCAAAGGACCAGGAGCCCAGCCAC...CAGAGATCTCACCATTGATT___GCCACCAGGGCCATCCATGAGCTCCTGCTGGAACCCAGTCGGCAGATGGAGGTGCAGTCCTTCTTCTCCTCCTTGTTCATGGCCCTGCTGTTCCAGATCTCCTTTTTG...CATAGCTGAATGGATGGACCCCATAAG___TTCTACCATGGAGGCCCTGAAGACCTTGATTCAAAGTTCTGGATATGGGGACTGTGTGTCTTCTATTCAGAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1736 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90801893:+ chr9:93564069-93660831:+ chr9:93564175:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200957299:+ chr1:200886588-200935796:+ chr1:200926427:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 3 1 273 21 ENST00000375751.8 ENST00000435735.2 downstream upstream none CGACACTGGGAGGAAGTGCGGGCCGCCTGCCCGGGCGCGTTAAGGAAGTTGCCCAAAATGAGGAAGAGCCGCGGGCCCGGCGGCTGAGGCCACCCCGGCGGCGGCTGGAGAGCGAGGAGGAGCGGGTGGCCCCGCGCTGCGCCCGCCCTCGCCTCACCTGGCGCAG|CTGCTTCAGTGCCCAGATGTGGCAGCCTTAGgGGATGACTTCACCACCTGCATTCTGGCAAACTGGTTCAAGAGTGAGGAGCCAGCCACAGTGAAGCCATTGCTGCAGATGCTAGAGGTCTTTGCGAAGCATGAAAACATG___GTGAGGCGGCTCCGAATCCTCCAGCCCTATGTGCTGAACTGCTGCTACTCCTCGAACAGCGACATCGTACTGGAGACTTTGCTGGTGCTGAAGAATCTCCTGAGCCACCTCACCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1737 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90802039:+ chr9:93564069-93660831:+ chr9:93564321:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200948092:+ chr1:200886588-200935796:+ chr1:200917220:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 0 2 1 145 15 ENST00000476708.1 ENST00000435735.2 downstream upstream none CATCGGCCGAGGTAAAAGTGCTGAAACCATGTGAATAAAATACAG|GGGGGTTTGCAAACCCTGGGAAATCCTGGCATCCTTCCCCAAAGGCTACGAAATGATCGTGGACTACCTGCTT...CTGCTTGTCAATCCTGAAAGACACTATGGCGGAGTCACTCTGCCGGCCAG___GTCCGTTGTCATCAATAACTGTTGGCACAACCGCCCCCTCTTCAGCTCCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1738 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90802039:+ chr9:93564069-93660831:+ chr9:93564321:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200957299:+ chr1:200886588-200935796:+ chr1:200926427:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 1 1 1 145 21 ENST00000476708.1 ENST00000435735.2 downstream upstream none GGGACTTTCTGGTAAGGAGAGGAGGTTACGGGGAACGACGCGCTGCTTTCATGCCCTTTCTTGTTCTACCTTCATCGGCCGAGGTAAAAGTGCTGAAACCATGTGAATAAAATACAG|CTGCTTCAGTGCCCAGATGTGGCAGCCTTAGTGGATGACTTCACCACCTGCATTCTGGCAAACTGGTTCAAGAGTGAGGAGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1739 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90801893:+ chr9:93564069-93660831:+ chr9:93564175:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200960332:+ chr1:200886588-200935796:+ chr1:200929460:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 1 1 273 25 ENST00000375751.8 ENST00000435735.2 downstream upstream none CGACACTGGGAGGAAGTGCGGGCCGCCTGCCCGGGCGCGTTAAGGAAGTTGCCCAAAATGAGGAAGAGCCGCGGGCCCGGCGGCTGAGGCCACCCCGGCGGCGGCTGGAGAGCGAGGAGGAGCGGGTGGCCCCGCGCTGCGCCCGCCCTCGCCTCACCTGGCGCAG|ATCTGCCGGTCTGCCCTCTGCCgCAC...GAGCCCTG___CTGGATCAGGAGACAAACAAAGCCCTCTGGTTTCTGAAGCAGTGTGTGGCTCTCTTCAAGAGCCCATAGGTTCCCATCCGCTGGGCAGCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1740 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90802039:+ chr9:93564069-93660831:+ chr9:93564321:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200948697:+ chr1:200886588-200935796:+ chr1:200917825:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 1 0 1 145 19 ENST00000476708.1 ENST00000435735.2 downstream upstream none GTTACGGGGAACGACGCGCTGCTTTCATGCCCTTTCTTGTTCTACCTTCATCGGCCGAGGTAAAAGTaCTGAAACCATGTGAATAAAATACAG|GCCACCAGGGCCATCCATGAGCTCCTGCTGGAACCCAGTCGGCAGATGGAGGTGCAGTCCTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1741 SYK::MROH3P ENSG00000165025.15::ENSG00000233217.2 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 285 TRUE 109 SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90802039:+ chr9:93564069-93660831:+ chr9:93564321:+ MROH3P ENSG00000233217.2 transcribed_unitary_pseudogene + + chr1:200917460-200966668:+ chr1:200965031:+ chr1:200886588-200935796:+ chr1:200934159:+ chr9:90838031,chr9:90838026 chr1:200944142,chr1:200944134 NA NA chr9:93600313,chr9:93600308 chr1:200913270,chr1:200913262 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 0 1 1 145 31 ENST00000476708.1 ENST00000435735.2 downstream upstream duplicates(1) CTTTCTTGTTCTACCTTCATCGGCCGAGGTAAAAGTGCTGAAACCATGTGAATAAAATACAG|CTGGATCAGGAGACAAACAAAGCCCTCTGGTTTCTGAAG...CTTGGAAGAGATCGATGAAATTGAGGAGGCATACACAG___CCCTACGGCACATGCAGAGAGACTCCAACCCCACGGTCAGCTGCCTCACCACGCAGACTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1748 NAV1::LYST ENSG00000134369.16::ENSG00000143669.16 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAV1 ENSG00000134369.16 protein_coding + + chr1:201539127-201826969:+ chr1:201794577:+ chr1:201508255-201796097:+ chr1:201763705:+ LYST ENSG00000143669.16 protein_coding - - chr1:235661041-235883724:- chr1:235702977:- chr1:235824341-236047024:- chr1:235866277:- chr1:201797700,chr1:201797699 chr1:235704378,chr1:235704379 NA NA chr1:201766828,chr1:201766827 chr1:235867678,chr1:235867679 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Beige/BEACH_domain(14%),WD_domain__G-beta_repeat(100%) |Beach(0%),WD40(100%) 0 2 2 48 12 ENST00000685211.1 ENST00000389793.7 downstream downstream none AGACGGCCGAGGAGAAG___GACACTGAGCTGCTGGATTTGCGAGAAACCATAGACTTTCTGAAGAAAAAGAACTCTGAGGCCCAGGCAGTCATTCAGGGAGCCCTTAATGCCTCAGAAACCACACCCAAAG|ACATATTTTGGAATGGATGTCTCTGCAGTTGAAGATCCAGTTCAGAGACGAGCGCTAGAAACCATGATAAAAACCTACGGGCAGACTCCCCGTCAGCTGTTCCACATGGCCCATGTGAG TAEEKDTELLDLRETIDFLKKKNSEAQAVIQGALNASETTPK|difwngclcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5191 chr1:201719508-201719627:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1749 GPR39::NCKAP5 ENSG00000183840.8::ENSG00000176771.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133517587:- chr2:133429361-134326034:- chr2:134275158:- chr2:132504327 chr2:133518654 NA NA chr2:133261900 chr2:134276225 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none 7_transmembrane_receptor_(rhodopsin_family)(79%)|Nck-associated_protein_5__Peripheral_clock_protein(100%) 7tm_1(0%)|NCKAP5(100%) 0 1 2 22 12 ENST00000329321.4 ENST00000409261.6 downstream downstream none CACGCGGCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCATCATCTTCCTGA|TGACCCTGGAAACAGACGGGGGATTCTTATAAGTCACAAAAGAAAATAAATAACTTCATCCATGGAGGGAAAGAGACAGCTTGAGAAAAG TRPPQLRKSESEESRTARRQTIIFL|mtletdggfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1752 AKR1C1::AKR1E2 ENSG00000187134.14::ENSG00000165568.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 287 TRUE 110 AKR1C1 ENSG00000187134.14 protein_coding + + chr10:4963253-4983283:+ chr10:4963528:+ chr10:5005445-5025475:+ chr10:5005720:+ AKR1E2 ENSG00000165568.18 protein_coding + + chr10:4786629-4848062:+ chr10:4830675:+ chr10:4828821-4890254:+ chr10:4872867:+ chr10:4965834 chr10:4803056 NA NA chr10:5008026 chr10:4845248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Aldo/keto_reductase_family(3%)|Aldo/keto_reductase_family(100%) Aldo_ket_red(0%)|Aldo_ket_red(78%) 51 66 29 42011 375 ENST00000380872.9 ENST00000533295.5 downstream upstream duplicates(19),mismatches(4) GCCAGGCTAGTGACAGAAATGGATTCGAAATATCAGTGTGTGAAGCTGAATGATGGTCACTTCATGCCTGTCCTGGGATTTGGCACCTATGCGCCTGCAGAG|GCTTCTCCAGGGAAAGTGACCGAGGCAGTGAAAGAGGCCATTGACGCAGGGTACCGGCACTTCGACTGTGCTTACTTTTACCACAATGAGAGGGAGGTTGGAGCAGGGATCCGTTGCAAGATCAAGGAAGGCGCTGTAAGACGGGAGGATCTGTTCATTGCCACTAAG___CTGTGGTGCACCTGCCATAAGAAGTCCTTGGTGGAAAC MDSKYQCVKLNDGHFMPVLGFGTYAPAE|ASPGKVTEAVKEAIDAGYRHFDCAYFYHNEREVGAGIRCKIKEGAVRREDLFIATKLWCTCHKKSLVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1753 AKR1C1::AKR1E2 ENSG00000187134.14::ENSG00000165568.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 287 TRUE 110 AKR1C1 ENSG00000187134.14 protein_coding + + chr10:4963253-4983283:+ chr10:4963528:+ chr10:5005445-5025475:+ chr10:5005720:+ AKR1E2 ENSG00000165568.18 protein_coding + + chr10:4786629-4848062:+ chr10:4824962:+ chr10:4828821-4890254:+ chr10:4867154:+ chr10:4965834 chr10:4803056 NA NA chr10:5008026 chr10:4845248 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Aldo/keto_reductase_family(3%)|Aldo/keto_reductase_family(100%) Aldo_ket_red(0%)|Aldo_ket_red(100%) 7 20 35 42011 101 ENST00000380872.9 ENST00000533295.5 downstream upstream duplicates(8),mismatches(3) GCCAGGCTAGTGACAGAAATGGATTCGAAATATCAGTGTGTGAAGCTGAATGATGGTCACTTCATGCCTGTCCTGGGATTTGGCACCTATGCGCCTGCAGAG|ATGGTGAGCTCCTGAGGGCAAGGCCCATGCAGGTCATTTTCAGCACTGCACCCTGGCCTAACTTGCCCCGTGCACAG___GCTTCTCCAGGGAAAGTGACCGAGGCAGTGAAAGAGGCCATTGACGCAGGGTACCGGCACTTCGACTGTGCTTACTTTTACCACAATGAGAGGGAGGTTGGAGCAGGGATCCGTTGCAAGATCAAGG MDSKYQCVKLNDGHFMPVLGFGTYAPAE|mvss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1754 AKR1C1::AKR1E2 ENSG00000187134.14::ENSG00000165568.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 287 TRUE 110 AKR1C1 ENSG00000187134.14 protein_coding + + chr10:4963253-4983283:+ chr10:4963528:+ chr10:5005445-5025475:+ chr10:5005720:+ AKR1E2 ENSG00000165568.18 protein_coding + + chr10:4786629-4848062:+ chr10:4833350:+ chr10:4828821-4890254:+ chr10:4875542:+ chr10:4965834 chr10:4803056 NA NA chr10:5008026 chr10:4845248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Aldo/keto_reductase_family(3%)|Aldo/keto_reductase_family(80%) Aldo_ket_red(0%)|Aldo_ket_red(68%) 0 1 5 42011 560 ENST00000380872.9 ENST00000533295.5 downstream upstream mismatches(1) CCAGGCTAGTGACAGAAATGGATTCGAAATATCAGTGTGTGAAGCTGAATGATGGTCACTTCATGCCTGTCCTGGGATTTGGCACCTATGCGCCTGCAGAG|CTGTGGTGCACCTGCCATAAGAAGTCCTTGGTGGAAACAGCATGCAGAAAGAGTCTCAAGGCCTTGAAGCTGAACTATTTGGACCTCTACCTCATACACTGGCCCATGGGTTTCAAG___CCTCCTCATCCAGAATGGATCATGAGCTGCAGTGAACTTTCCTTCTGCCTCTCACATCCTCGAGTGCAGGACTTGCCTCTGGACGAG MDSKYQCVKLNDGHFMPVLGFGTYAPAE|LWCTCHKKSLVETACRKSLKALKLNYLDLYLIHWPMGFKPPHPEWIMSCSELSFCLSHPRVQDLPLD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1755 AKR1C1::AKR1E2 ENSG00000187134.14::ENSG00000165568.18 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 287 TRUE 110 AKR1C1 ENSG00000187134.14 protein_coding + + chr10:4963253-4983283:+ chr10:4963528:+ chr10:5005445-5025475:+ chr10:5005720:+ AKR1E2 ENSG00000165568.18 protein_coding + + chr10:4786629-4848062:+ chr10:4835675:+ chr10:4828821-4890254:+ chr10:4877867:+ chr10:4965834 chr10:4803056 NA NA chr10:5008026 chr10:4845248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Aldo/keto_reductase_family(3%)|Aldo/keto_reductase_family(66%) Aldo_ket_red(0%)|Aldo_ket_red(60%) 1 1 3 42011 410 ENST00000380872.9 ENST00000345253.9 downstream upstream duplicates(1) CAGGCTAGTGACAGAAATGGATTCGAAATATCAGTGTGTGAAGCTGAATGATGGTCACTTCATGCCTGTCCTGGGATTTGGCACCTATGCGCCTGCAGAG|CCTCCTCATCCAGAATGGATCATGAGCTGCAGTGAACTTTCCTTCTGCCTCTCACATCCTCGAGTGCAGGACTTGCCTCTGGACGAGAGCAACATGGTTATTCCCAGTGACACGGACTTCCTGGACACGTGGGAG___ATTTTGA MDSKYQCVKLNDGHFMPVLGFGTYAPAE|PPHPEWIMSCSELSFCLSHPRVQDLPLDESNMVIPSDTDFLDTWEIL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1761 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 171 TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35180274:+ chr11:35160429-35253949:+ chr11:35201821:+ chr11:36164805,chr11:36164804 chr11:35179796,chr11:35179792 NA NA chr11:36186355,chr11:36186354 chr11:35201343,chr11:35201339 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Low-density_lipoprotein_receptor_domain_class_A(100%)|Extracellular_link_domain(51%) Ldl_recept_a(100%)|Xlink(91%) 4 3 7 1493 37154 ENST00000528989.5 ENST00000263398.11 downstream upstream duplicates(1),mismatches(1) CAACGACGCCGGGCAGCGGGAGCGGCGGCCGCGCCATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGG___AGAGCCAGCTGCTCCCCGGG...GCGGCATCCATTGCATCATTGGTCGCTTCCGGTGCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCA___CAGCAAACCCTCTGCTTTGCTCCACCGCCCGCTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAG|GTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAATGCTTCAG___CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAAGTATGTCTCTCTTCTAATCTTAATTAAATTTTCCTATTTTGGGGAAAG...CTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACTGTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACA GIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQ|gmgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 FALSE 35198122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1762 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Low-density_lipoprotein_receptor_domain_class_A(100%)|Extracellular_link_domain(100%) Ldl_recept_a(100%)|Xlink(100%) 1 0 7 1493 40015 ENST00000315571.6 ENST00000263398.11 downstream upstream none GCCTGCTGCTGAGCAGCGCCGCGG___AGAGCCAGCTGCTCCCCGGGAACAACTTCACCAATGAGTGCAACATACCAGGCAACTTCATGTGCAGCAATGGACGG...GCGGCATCCATTGCATCATTGGTCGCTTCCGGTGCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCA___CAGCAAACCCTCTGCTTTGCTCCACCGCCCGCTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAG|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAG GIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQ|dLNITCRFAGVFHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 FALSE 35198122 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1763 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35186832:+ chr11:35160429-35253949:+ chr11:35208379:+ chr11:36164805,chr11:36164804 chr11:35179796,chr11:35179792 NA NA chr11:36186355,chr11:36186354 chr11:35201343,chr11:35201339 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Low-density_lipoprotein_receptor_domain_class_A(100%)|Extracellular_link_domain(7%) Ldl_recept_a(100%)|Xlink(77%) 1 0 4 1493 42759 ENST00000315571.6 ENST00000263398.11 downstream upstream none GCGGCATCCATTGCATCATTGGTCGCTTCCGGTGCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCA___CAGCAAACCCTCTGCTTTGCTCCACCGCCCGCTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAG|CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAA___CTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAATACAGAACGAATCCTGAA GIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQ|aPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 FALSE 35198122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1764 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:35944144:+ chr11:35965531-36253686:+ chr11:35965694:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Extracellular_link_domain(100%) |Xlink(100%) 0 1 1 1777 40015 ENST00000528989.5 ENST00000263398.11 downstream upstream none GCCGAGGCCGCGGGGGCAGCAACGACGCCGGGCAGCGGGAGCGGCGGCCGCGCCATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGG|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATC...CGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG___GTATGGGTTCATAG MWLLGPLCLLLSSAA|dLNITCRFAGVFHVEKNGRYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 TRUE 35198122 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1765 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35208105:+ chr11:35160429-35253949:+ chr11:35229652:+ chr11:36164805,chr11:36164804 chr11:35179796,chr11:35179792 NA NA chr11:36186355,chr11:36186354 chr11:35201343,chr11:35201339 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Low-density_lipoprotein_receptor_domain_class_A(100%)|Extracellular_link_domain(7%) Ldl_recept_a(100%)|Xlink(30%) 0 1 1 1493 49109 ENST00000315571.6 ENST00000428726.8 downstream upstream none GAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAG|ATATGGACTCCAGTCATAGTAcAACGCTTCAGCCTACTGCAAATCCAAACACAGGTTTGGTGGAAGATTTGGACAGGACAGGACCTCTTTCAATGACAACGC___AGCAGAGTAATTCTCAGAGCTTCTCTACATCACATGAAGGCTTGGAAGAAGATAAA NNCQDNSDEESCESSQ|dMDSSHStTLQPTANPNTGLVEDLDRTGPLSMTTQQSNSQSFSTSHEGLEED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 FALSE 35198122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1766 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 288 TRUE 111 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:35944144:+ chr11:35965531-36253686:+ chr11:35965694:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35214852:+ chr11:35160429-35253949:+ chr11:35236399:+ chr11:36164805,chr11:36164804 chr11:35179796,chr11:35179792 NA NA chr11:36186355,chr11:36186354 chr11:35201343,chr11:35201339 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Extracellular_link_domain(7%) |Xlink(15%) 0 2 0 1777 32711 ENST00000315571.6 ENST00000263398.11 downstream upstream none GCCGCGCCATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGG|GAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATG...CCCAAATTCCAG___AATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAG___GTGTGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCCAAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTG MWLLGPLCLLLSSAA|gDQDTFHPSGGSHTTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 TRUE 35198122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1774 DGUOK::ENSG00000258881 ENSG00000114956.20::ENSG00000258881.6 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 290 TRUE 112 DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73939022:+ chr2:74153953-74186088:+ chr2:74166149:+ ENSG00000258881 ENSG00000258881.6 protein_coding - - chr2:70939318-70995336:- chr2:70948375:- chr2:71166448-71222466:- chr2:71175505:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Deoxynucleoside_kinase(19%)| dNK(37%)|ATP-synt_ab_N(31%) 0 1 1 219 11 ENST00000348222.3 ENST00000453130.1 downstream downstream duplicates(1) GAACCTGTAGCAACATGGCAGAATATCCAGGCTGCTGGCACCCAAAAA|TCCTAGCTACTCGGGAGGCTGAGGCAGGAAAATCGCTTGAACCCGGGAGAAGA...AGCAGAGATCGTGCCATTGCACTTCAGCCTGGCGACAGAGCAAGACTCCGTCTCAAAAAGAAAAAAAAAAAGTGATCATTTTCAT___GAATGCTGCCTCTAAGGTCCCTCCTGCTGACAATGGCCAGGGCAGTGCGGAGGCTCCTCTTTGGAAATTG EPVATWQNIQAAGTQK|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1775 DGUOK::ENSG00000258881 ENSG00000114956.20::ENSG00000258881.6 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 290 TRUE 112 DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73946906:+ chr2:74153953-74186088:+ chr2:74174033:+ ENSG00000258881 ENSG00000258881.6 protein_coding - - chr2:70939318-70995336:- chr2:70948375:- chr2:71166448-71222466:- chr2:71175505:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Deoxynucleoside_kinase(45%)| dNK(62%)|ATP-synt_ab_N(31%) 0 1 1 748 11 ENST00000348222.3 ENST00000453130.1 downstream downstream none CAGGAAGCCAGTACAGATCTTTGAGAGGTCTGTGTACAGTGACAG|TCCTAGCTACTCGGGAGGCTGAGGCAGGAAAATCGCTTGAACCCGGGAGAAGAAGG...AAAgAAAAAAAGTGATCATTTTCAT___GAATGCTGCCTCTAAGGTCCCTCCTGCTGACAATGGCCAGGGCAGTGCGGAGGCTCCTCTTTGGAAATTGTCTTCAGAGCTGATGCAGACTCTTTTGAAAGCAGCCACAGACATTGGGGATGGAGTCTGGTGGTTAAG___GACTTGGACTAGGAAGATCAACTGGG RKPVQIFERSVYSDs|psysgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1779 IQGAP1::ENSG00000275674 ENSG00000140575.13::ENSG00000275674.1 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90390873:+ chr15:90931474-91045471:+ chr15:90934105:+ ENSG00000275674 ENSG00000275674.1 protein_coding + + chr15:90266317-90314499:+ chr15:90314298:+ chr15:90809549-90857731:+ chr15:90857530:+ chr15:90410397,chr15:90410397,chr15:90410398 chr15:90301193,chr15:90301194,chr15:90301191 NA NA chr15:90953629,chr15:90953629,chr15:90953630 chr15:90844425,chr15:90844426,chr15:90844423 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none Calponin_homology_(CH)_domain(4%)| CH(0%)| 2 2 2 923 2 ENST00000268182.10 ENST00000622269.1 downstream upstream low_entropy(1) GTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG|GTACTCTGCATAACAACTGGTTATGATCAGGGCCAATGACTCCCCACCACTTCCCAGCAGATAAGGCTCAGGCATTGAAGCAGAGAGTCCCTTTGGGCCCTGAGGATGCAGGAAGTACCTGCACCCACCTAAGACCTCCATCATTGGTTCATCCAAACTACTTCCTAATGTCAGAATAAGAAACAAGTCTCTTTT VARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKr|ysa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1797 CTNNA1::SIL1 ENSG00000044115.21::ENSG00000120725.13 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA1 ENSG00000044115.21 protein_coding + + chr5:138610967-138935034:+ chr5:138827718:+ chr5:137946656-138270723:+ chr5:138163407:+ SIL1 ENSG00000120725.13 protein_coding - + chr5:138946724-139293557:- chr5:139263214:+ chr5:138282413-138629246:- chr5:138598903:+ chr5:138853777,chr5:138853776 chr5:139260698,chr5:139260694 NA NA chr5:138189466,chr5:138189465 chr5:138596387,chr5:138596383 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Vinculin_family(39%)| Vinculin(4%)| 3 0 0 1973 4 ENST00000627109.2 unknown downstream upstream none GCAGCCTATAAGGCCAACAGGGACCTGATATACAAGCAGCTGCAGCAGGCGGTCACAGGCATTTCCcATGCAGCCCAGGCCACTGCCTCAGACGATGCCTC...CTGGAAAGCATCATTAGTGGGGCTGCCTTGATGGCCGACTCGTCCTGCACGCGTGATGACCGTCGTGAGCGAATTGTGGCAGAGTGTAATGCTGTCCGCCAGGCCCTGCAGGACCTGCTTTCGGAGTACATGGGCAAT|GTTTAACTAAGATTATTACAAGTTGAGTTAATTGGCTGAATGAAATAATGAGGCCAGGCCTAGAGGAAGTGGGGCTTTGAAGAAAAA LESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Catenin Alpha 1 2 AML, MDS, cutaneous melanoma gastric cancer Hereditary Diffuse Gastric Cancer Syndrome epithelial, leukaemia_lymphoma TSG, fusion large_deletion, missense, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 1821 TBK1::RASSF3 ENSG00000183735.11::ENSG00000153179.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64467082:+ chr12:64845870-64895894:+ chr12:64860862:+ RASSF3 ENSG00000153179.14 protein_coding + - chr12:64507001-64697564:+ chr12:64624628:- chr12:64900781-65091344:+ chr12:65018408:- chr12:64473409,chr12:64473393,chr12:64473409,chr12:64473408 chr12:64636587,chr12:64636587,chr12:64636584,chr12:64636588 NA NA chr12:64867189,chr12:64867173,chr12:64867189,chr12:64867188 chr12:65030367,chr12:65030367,chr12:65030364,chr12:65030368 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_kinase_domain(77%)| PK_Tyr_Ser-Thr(46%),Pkinase(60%),Pkinase_fungal(27%)| 198 81 103 3494 269 ENST00000676809.1 unknown downstream downstream duplicates(45),low_entropy(2),mismappers(2),mismatches(9) ACCAGAATCTGAATTCTTAATTGTTTTGCGAGATGTGG___TGGGTGGAATGAATCATCTACGAGAGAATGGTATAGTGCACCGTGATATCAAGCCAGGAAATATCATGCGTGTTATAGGGGAAGATGGACAGTCTGTGTACAAACTCACAGATTTTGGTGCAGCTAGAGAATTAGAAGATGATGAGCAGTTTGTTTCTCTGTATGGCACAGAAGAATATTTG|GCATCCTACTAGTTTACAAATGAGGAAACTGAGGCTCAAAGAGGTACAACGATTTGCCAGGCGTGATGGCCCATACCTGTAATACCAGCGCTTTGGGAGGCCAAGGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGACCAAACTGAGC PESEFLIVLRDVVGGMNHLRENGIVHRDIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYL|asy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1828 CSPP1::SGK3 ENSG00000104218.16::ENSG00000104205.16 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSPP1 ENSG00000104218.16 protein_coding + + chr8:67062417-67196778:+ chr8:67064496:+ chr8:67974652-68109013:+ chr8:67976731:+ SGK3 ENSG00000104205.16 protein_coding + - chr8:66712734-66862022:+ chr8:66785191:- chr8:67624969-67774257:+ chr8:67697426:- chr8:67071654,chr8:67071652 chr8:66786639,chr8:66786641 NA NA chr8:67983889,chr8:67983887 chr8:67698874,chr8:67698876 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 28 77 20 613 214 ENST00000678542.1 unknown downstream downstream duplicates(8),mismappers(1),mismatches(2) CCGGAGGTCTGTCATGCTGTTCCCGCTCCAGGTGGCCGCTGTAACCTCTTCGGTCCGCGACGATCCTCTAGAGCACTGTGTGTCTCCCCGGACGCGAGCCCGCTCCCCTGA|ATACAGAGTTGAAGAGAAGAGAGCACCAGGGATCCACCAGGCAACTGCGTTACAGAAAGAAAGTCACGCACAGGAAAAGCAGATTTCTGATTCTGCCACCAGGAAGGGTCAAAGTCTGGACAGCACTTGGTCAGGAGCCTGGCTTCCCTTTCTTGAAAAACATCACATGTAAACATCTAACTGAGAGCTTGGTACACAGCAGGCTCTGAGTGTTGGCCCCATCACGATGACAACCAAGGGCTAATTATGAAATAAGGAGGACACAAGAAAAG MLFPLQVAAVTSSVRDDPLEHCVSPRTRARSPe|yrveekrapgihqatalqkeshaqekqisdsatrkgqsldstwsgawlpflekhhm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1829 CSPP1::C8orf44-SGK3 ENSG00000104218.16::ENSG00000288602.1 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSPP1 ENSG00000104218.16 protein_coding + + chr8:67062417-67196778:+ chr8:67064496:+ chr8:67974652-68109013:+ chr8:67976731:+ C8orf44-SGK3 ENSG00000288602.1 protein_coding + - chr8:66667596-66860472:+ chr8:66785191:- chr8:67579831-67772707:+ chr8:67697426:- chr8:67071654,chr8:67071652 chr8:66786639,chr8:66786641 NA NA chr8:67983889,chr8:67983887 chr8:67698874,chr8:67698876 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 28 77 20 613 214 ENST00000678542.1 unknown downstream downstream duplicates(8),mismappers(1),mismatches(3) CCGGAGGTCTGTCATGCTGTTCCCGCTCCAGGTGGCCGCTGTAACCTCTTCGGTCCGCGACGATCCTCTAGAGCACTGTGTGTCTCCCCGGACGCGAGCCCGCTCCCCTGA|ATACAGAGTTGAAGAGAAGAGAGCACCAGGGATCCACCAGGCAACTGCGTTACAGAAAGAAAGTCACGCACAGGAAAAGCAGATTTCTGATTCTGCCACCAGGAAGGGTCAAAGTCTGGACAGCACTTGGTCAGGAGCCTGGCTTCCCTTTCTTGAAAAACATCACATGTAAACATCTAACTGAGAGCTTGGTACACAGCAGGCTCTGAGTGTTGGCCCCATCACGATGACAACCAAGGGCTAATTATGAAATAAGGAGGACACAAGAAAAG MLFPLQVAAVTSSVRDDPLEHCVSPRTRARSPe|yrveekrapgihqatalqkeshaqekqisdsatrkgqsldstwsgawlpflekhhm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1832 ACLY::FAM157C ENSG00000131473.17::ENSG00000260528.6 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACLY ENSG00000131473.17 protein_coding - - chr17:41866917-41930542:- chr17:41906528:- chr17:40023170-40086795:- chr17:40062781:- FAM157C ENSG00000260528.6 lncRNA + - chr16:90102261-90178344:+ chr16:90102737:- chr16:90168669-90244752:+ chr16:90169145:- chr17:41905990,chr17:41905994 chr16:90103310,chr16:90103311 NA NA chr17:40062243,chr17:40062247 chr16:90169718,chr16:90169719 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none ATP_citrate_lyase_citrate-binding(26%)| Citrate_bind(42%)| 9 47 38 2223 179 ENST00000353196.5 unknown upstream downstream duplicates(4),inconsistently_clipped(3),mismatches(13) CGAGTTCCCTCCCCCCTTCGGGCGGGAGGCATATCCAGAG___GAAGCCTACATTGCAGACCTCGATGCCAAAAGTGGGGCAAGCCTGAAGCTGACCTTGCTGAACCCCAAAGGGAGGATCTGGACCATGGTGGCCGGGGGTGGCGCCTCTGTCGTGTACAG|GTCCCTGTGGCTGCTTTACAGAAAGCAGGAAGTGGCCACTTCAGCCACACGGCTGCATTTCCAGCTCAGTCCAGGCAGAGCTGCACCCTGCCTTGCACCTCTGCAGATCCTGAGGGGAGTCCTTAACTGAGCCAGGGCGAGTCCTGGGGGCACTCTGCCCCTGGGCAGGCCCTGAATCTCCTCTGCTCCCACACTCTAGAGTTCAACAGGTCTCAGGGGCTCTGCCTGAGGACTGTCCTTCAACCAGGTATTCGTAATTTCCCCAAGACCCAGGCTTGCTGAGTCACTCAGTTACCTGAATGCCTTTTTCACAAAGGAATGACT EFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYr|slwllyrkqevatsatrlhfqlspgraapclaplqilrgvln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1833 FBXO32::DNAAF11 ENSG00000156804.7::ENSG00000129295.10 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXO32 ENSG00000156804.7 protein_coding - + chr8:123497889-123541206:- chr8:123539137:+ chr8:124510129-124553446:- chr8:124551377:+ DNAAF11 ENSG00000129295.10 protein_coding - - chr8:132570416-132675592:- chr8:132661627:- chr8:133582664-133687838:- chr8:133673873:- chr8:123539234,chr8:123539235 chr8:132665759,chr8:132665758 NA NA chr8:124551474,chr8:124551475 chr8:133678005,chr8:133678004 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |Leucine-rich_repeat(99%) |LRR_4(100%),LRR_6(100%),LRR_9(100%) 15 14 28 67 58 unknown ENST00000620350.5 downstream downstream duplicates(3),mismatches(7) GGGCTGTGCAGGAAACCACCTGATTCCAGCCCAGTCTAAACTTTTGTG___...GAGACAGGGTCTCGCTCTGTGGCCCAGGCTGGAGCGCAGTGGCACAGTCATGACTCGCTGCAGCCTTGAACTTCTGAGCACAAGCCATCCTCCCACCTCAGCCTCCCGAGTAGG|TCACAGAAGATCTTATTAGACGGAATGCTGAACACAACGACTGTGTCATTTTTTCCCTGGAGGAACTCTCGTTGCATCAGCAAGAAATAGAAAGACTAGAACACATTGATAAATGGTGCCGGGATTTAAAAATTCTCTATCTTCAAAATAATCTTATTGGGAAAATTG___AAAATGTTAGCAAACTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1836 JPH1::NCOA2 ENSG00000104369.5::ENSG00000140396.13 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 294 TRUE 113 JPH1 ENSG00000104369.5 protein_coding - - chr8:74234700-74321540:- chr8:74314861:- chr8:75146935-75233775:- chr8:75227096:- NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70296800:- chr8:71022017-71316043:- chr8:71209035:- chr8:74266546,chr8:74266554,chr8:74266566 chr8:70309348,chr8:70309345,chr8:70309306 NA NA chr8:75178781,chr8:75178789,chr8:75178801 chr8:71221583,chr8:71221580,chr8:71221541 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none MORN_repeat(100%)|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%) MORN(100%)|DUF1518(100%),DUF4927(100%),NCOA_u2(100%),Nuc_rec_co-act(100%),PAS(100%),PAS_11(100%),PAS_9(100%),SRC-1(100%) 18 12 10 367 51 ENST00000342232.5 ENST00000452400.7 upstream downstream duplicates(2) GAAGGGGAGTGGGCAAATAACAAGAGGCATGGATATGGCTGTACCGTGTTTCCTGACGGCTCCAAAGAAGAGGGAAAATACAAAAATAATATTCTGGTCCGTGGGATAAGGAAGCAGCTTATACCAATAAGACATACAAAAACTAGGGAGAAGGTGGACAGAGCAATTGAAGGCGCCCAAAGGGCAGCTGCCATGGCCAGAACCAAAGTGGAAATAGCAAATTCAAG|ATTTCTCTTGGATTTGGCTACACACTTATAGATCTTCTGCACTGTTTACAGGCACAG___TTGCTGATATGTGTTCAAGATGAGTGGGATGGGAGAAAATACCTCTGACCCCTCCAGGGCAGAGACAAGAAAGCGCAAG EGEWANNKRHGYGCTVFPDGSKEEGKYKNNILVRGIRKQLIPIRHTKTREKVDRAIEGAQRAAAMARTKVEIANSr|flldlathl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 1837 JPH1::NCOA2 ENSG00000104369.5::ENSG00000140396.13 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 294 TRUE 113 JPH1 ENSG00000104369.5 protein_coding - - chr8:74234700-74321540:- chr8:74320909:- chr8:75146935-75233775:- chr8:75233144:- NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70296800:- chr8:71022017-71316043:- chr8:71209035:- chr8:74266546,chr8:74266554,chr8:74266566 chr8:70309348,chr8:70309345,chr8:70309306 NA NA chr8:75178781,chr8:75178789,chr8:75178801 chr8:71221583,chr8:71221580,chr8:71221541 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion low none MORN_repeat(60%)|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%) MORN(5%)|DUF1518(100%),DUF4927(100%),NCOA_u2(100%),Nuc_rec_co-act(100%),PAS(100%),PAS_11(100%),PAS_9(100%),SRC-1(100%) 1 0 0 272 51 ENST00000342232.5 ENST00000452400.7 upstream downstream none GCTACGGGGTCCGGCAGAGCCTGTGCACCCCCGCTCGCTACGAGGGTACCTGGAGTAACGGGCTGCAAGACGGGTACGGCGTGGAGACCTACGGGGACGGAG|ATTTCTCTTGGATTTGGCTACACACTTATAGATCTTCTGCACTGTTTACAGGCA YGVRQSLCTPARYEGTWSNGLQDGYGVETYGDG|dfswiwlhtyrssalftg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 1838 ASAP1::CCDC26 ENSG00000153317.15::ENSG00000229140.12 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- CCDC26 ENSG00000229140.12 lncRNA - + chr8:128634199-129683770:- chr8:129561716:+ chr8:129646445-130696016:- chr8:130573962:+ chr8:130246668,chr8:130246671 chr8:129528777,chr8:129528774 NA NA chr8:131258914,chr8:131258917 chr8:130541023,chr8:130541020 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 15 11 14 663 45 ENST00000518721.6 unknown upstream upstream duplicates(4),mismappers(6),mismatches(11) CTGAGACATGAGATCTTCAGCCTCCAGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG___...CAGAAATG___GATGCCGGACCAGATCTCTGTCTCGGAGTTCATCGCCGAGACCACCGAGGACTACAACTCGCCCACCACGTCCAGCTTCACCACGCGGCTGCACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|TACGAAGGCCCTCACCAGATGCCAGCGTTATGTTCTTGGACTTCCAAGCCTGAACCATGAGTGAATGGACTCTCATTGTTTGTAAATTATCCAGTCTATGATATTCTGTCAGAGCAGCAAAAAATATACTAGGACAATCTACCTCCTGGGAGCTGTTTAGAGCGCTAACTCCAGCCTGCATCTTTGGCAGCAGCACATATACCTCTCATTCTGGCTGGCTGTGCTCTGCCACATTGACCTGCTTTGTCACTTGCAACAACCTCTTGCCTGACTCCAGAGTCTGCAAATTTTATTTCCGCTTTCTGATTGGCTCTCTTGACCCTCTCCTCC qkwMPDQISVSEFIAETTEDYNSPTTSSFTTRLHNCRNTVTLLEE|yegphqmpalcswtskpep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1840 ZSWIM4::RFX1 ENSG00000132003.10::ENSG00000132005.9 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 172 TRUE 295 TRUE 114 ZSWIM4 ENSG00000132003.10 protein_coding + + chr19:13795443-13832254:+ chr19:13813164:+ chr19:13906257-13943068:+ chr19:13923978:+ RFX1 ENSG00000132005.9 protein_coding - - chr19:13961530-14007039:- chr19:13983595:- chr19:14072342-14117851:- chr19:14094407:- chr19:13814062 chr19:13990833 NA NA chr19:13924876 chr19:14101645 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |RFX1_transcription_activation_region______(100%),RFX_DNA-binding_domain(100%) SWIM(100%)|RFX1_trans_act(100%),RFX_DNA_binding(100%) 1 8 7 74 67 ENST00000590508.6 ENST00000254325.9 downstream downstream mismatches(2) CGCCTGGCCCTGTGGCGGCAGCAGGGCGCGGGCATGACGGACAAGTGCCGGCAGCTCTGGGATGAGCTGG___GGGCCCTGTGGGTTTGCGTCGTCCTGAGCCCCCACTGCAAACCAGAGGAAAGGGCAGGCTGGCTCCAGCTACTCAGCAGGTGGGACAAGCTCGACGTCTGCCCACTGGAAGAGGGCAACTACTCCTTCGACGGCCCCAGCCTGCAGCCCACCATGGCCCCCGCCCCAG|AAGGTGCCATGCGGGCCAGCGAGACAGTGTCGGAGGCCAGCCCCGGCTCCACCGCCAGCCAGACCGGCGTTCCTACTCAGGTGGTTCAGCAGGTGCAGGGCACCCAGCAG___CGGCTGCTGGTCCAGACGAGCGTGCAGGCCAAGCCAGGCCACGTGTCGCCCCTCCAGCTGACCAACATCCAAGTGCCCCAGCAG___GCTCTTCCCACGCAGCGTCTGGTGGTGCAGAGCGCAGCCCCAGGCAGCAAAGGTGGCCAGGTCTCCCTGACGGTCCATGGTACCCAGCAGGTGCACTCGCCCCCAGAG___CAGTCGCCGGTGCA RLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLDVCPLEEGNYSFDGPSLQPTMAPAP|eGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1841 ZSWIM4::RFX1 ENSG00000132003.10::ENSG00000132005.9 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 295 TRUE 114 ZSWIM4 ENSG00000132003.10 protein_coding + + chr19:13795443-13832254:+ chr19:13809220:+ chr19:13906257-13943068:+ chr19:13920034:+ RFX1 ENSG00000132005.9 protein_coding - - chr19:13961530-14007039:- chr19:13983595:- chr19:14072342-14117851:- chr19:14094407:- chr19:13814062 chr19:13990833 NA NA chr19:13924876 chr19:14101645 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |RFX1_transcription_activation_region______(100%),RFX_DNA-binding_domain(100%) SWIM(100%)|RFX1_trans_act(100%),RFX_DNA_binding(100%) 0 1 1 120 67 ENST00000590508.6 ENST00000254325.9 downstream downstream mismatches(2) GGGCCAGCCAGCAGCTGCGCTCCATGTTCAGCAAG___GTGCGGGAGATGCTGCGAATGCGGGACTCCAACGGGGCGCGCATGCTGATTCTCATGACCGAGCAGTTCCTGCAGGACACGCGCCTGGCCCTGTGGCGGCAGCAGGGCGCGGGCATGACGGACAAGTGCCGGCAGCTCTGGGATGAGCTGG|AAGGTGCCATGCGGGCCAGCGAGACAGTGTCGGAGGCCAGCCCCGGCTCCACCGCCAGCCAGACCGGCGTTCCTACTCAGGTGGTTCAGCAGGTGCAGGGCACCCAGCAG___CGGCTGCTGGTCCAGACGAGCGTGCAGGCCAAGCCAGGCCACGTGTCGCCCCTCCAGCTGACCAACATCCAAGTGCCCCAGCAG___GCTCTTCCC ASQQLRSMFSKVREMLRMRDSNGARMLILMTEQFLQDTRLALWRQQGAGMTDKCRQLWDEL|eGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQAL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1842 NCOA2::LINC00320 ENSG00000140396.13::ENSG00000224924.9 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70296744:- chr8:71022017-71316043:- chr8:71208979:- LINC00320 ENSG00000224924.9 lncRNA - + chr21:20651450-20803816:- chr21:20661276:+ chr21:22023763-22176134:- chr21:22033589:+ chr8:70225570,chr8:70225572 chr21:20652619,chr21:20652617 NA NA chr8:71137805,chr8:71137807 chr21:22024932,chr21:22024930 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 1 13 0 51 41 ENST00000452400.7 unknown upstream upstream duplicates(1),inconsistently_clipped(1) ATTcaAGATTTCTCTTGGATTTGGCTACACACTTATAGATCTTCTGCACTGTTTACAGGCACAG|GTGGCAGTCTAGTAAGATTTAACGATACTGTCTGACTGGAGCTGGAAAGCAGTGAGTATGGCTGCTATCGGAGAGGAGAGAGAAAATCAATCTCTGTGGGCTGCTATTATCCAGAAGAAATGGAGAGCTCCCAATGACCAGGCATTCCACCGAGCAACAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 1844 ARFGEF1::SGK3 ENSG00000066777.9::ENSG00000104205.16 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARFGEF1 ENSG00000066777.9 protein_coding - - chr8:67173511-67343781:- chr8:67238343:- chr8:68085746-68256016:- chr8:68150578:- SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66793616:+ chr8:67624969-67774257:+ chr8:67705851:+ chr8:67237587,chr8:67224146,chr8:67224102,chr8:67224093,chr8:67224091,chr8:67224087,chr8:67224129,chr8:67224085,chr8:67237589,chr8:67237591 chr8:66787252,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66787250,chr8:66787245 NA NA chr8:68149822,chr8:68136381,chr8:68136337,chr8:68136328,chr8:68136326,chr8:68136322,chr8:68136364,chr8:68136320,chr8:68149824,chr8:68149826 chr8:67699487,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67699485,chr8:67699480 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Dimerisation_and_cyclophilin-binding_domain_of_Mon2(100%),Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%),Sec7_domain(100%)|PX_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) DCB(100%),Sec7(100%),Sec7_N(100%)|PK_Tyr_Ser-Thr(100%),PX(100%),Pkinase(100%),Pkinase_C(100%) 4 5 3 443 88 ENST00000262215.8 ENST00000521198.7 upstream upstream none ATTCTGAAGTGCATCAGTCAGTTGGAGCTGGCACAGCTTATAGGAACTGGAGTGAAACCTCGATACATTTCTGGAACAGTGCGAGGCAGAGAAGGATCTCTTACTGGAACAAAAGATCAGGCTCCTGATGAATTTGTGGGTTTAGGGCTAG|GTTGCATGATGGAATTTGAACATTACTTCAAGAGGTTTTGTATTTTGGATTAGTTAATTGGGTTTGTCCTCTGCTGACTGTTTCTTCGGATGCATTTTTTGGTGTGCTCTTGAGGGATTAAATGCAAAGAGATCACACCATGGACTACAAGGAAAGCTGCCCAAGTGTAAGCATTCCCAGCTCCGATGAACACAGAGAGAAAAAGAAGAGGTTTACT___GTTTATAAAGTTCTGGTTTCAGTGGGAAGAAGTGAATGGTTTGTCTTCAGGAG ILKCISQLELAQLIGTGVKPRYISGTVRGREGSLTGTKDQAPDEFVGLGL|gcmmefehyfkrfcild* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1845 ARFGEF1::C8orf44-SGK3 ENSG00000066777.9::ENSG00000288602.1 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARFGEF1 ENSG00000066777.9 protein_coding - - chr8:67173511-67343781:- chr8:67238343:- chr8:68085746-68256016:- chr8:68150578:- C8orf44-SGK3 ENSG00000288602.1 protein_coding + + chr8:66667596-66860472:+ chr8:66793616:+ chr8:67579831-67772707:+ chr8:67705851:+ chr8:67237587,chr8:67224146,chr8:67224102,chr8:67224093,chr8:67224091,chr8:67224087,chr8:67224129,chr8:67224085,chr8:67237589,chr8:67237591 chr8:66787252,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66787250,chr8:66787245 NA NA chr8:68149822,chr8:68136381,chr8:68136337,chr8:68136328,chr8:68136326,chr8:68136322,chr8:68136364,chr8:68136320,chr8:68149824,chr8:68149826 chr8:67699487,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67699485,chr8:67699480 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Dimerisation_and_cyclophilin-binding_domain_of_Mon2(100%),Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%),Sec7_domain(100%)|PX_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) DCB(100%),Sec7(100%),Sec7_N(100%)|PK_Tyr_Ser-Thr(100%),PX(100%),Pkinase(100%),Pkinase_C(100%) 4 5 3 443 88 ENST00000262215.8 ENST00000519289.1 upstream upstream none ATTCTGAAGTGCATCAGTCAGTTGGAGCTGGCACAGCTTATAGGAACTGGAGTGAAACCTCGATACATTTCTGGAACAGTGCGAGGCAGAGAAGGATCTCTTACTGGAACAAAAGATCAGGCTCCTGATGAATTTGTGGGTTTAGGGCTAG|GTTGCATGATGGAATTTGAACATTACTTCAAGAGGTTTTGTATTTTGGATTAGTTAATTGGGTTTGTCCTCTGCTGACTGTTTCTTCGGATGCATTTTTTGGTGTGCTCTTGAGGGATTAAATGCAAAGAGATCACACCATGGACTACAAGGAAAGCTGCCCAAGTGTAAGCATTCCCAGCTCCGATGAACACAGAGAGAAAAAGAAGAGGTTTACT___GTTTATAAAGTTCTGGTTTCAGTGGGAAGAAGTGAATGGTTTGTCTTCAGGAG ILKCISQLELAQLIGTGVKPRYISGTVRGREGSLTGTKDQAPDEFVGLGL|gcmmefehyfkrfcild* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1848 TMEM9B::TMEM41B ENSG00000175348.11::ENSG00000166471.11 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM9B ENSG00000175348.11 protein_coding - - chr11:8947202-8965011:- chr11:8948302:- chr11:8968749-8986558:- chr11:8969849:- TMEM41B ENSG00000166471.11 protein_coding - - chr11:9280654-9314636:- chr11:9295387:- chr11:9302201-9336183:- chr11:9316934:- chr11:8947840,chr11:8947843 chr11:9296363,chr11:9296363 NA NA chr11:8969387,chr11:8969390 chr11:9317910,chr11:9317910 NA NA sense sense stop-codon 3'UTR CDS/splice-site duplication high none TMEM9(100%)|SNARE_associated_Golgi_protein(100%) Tmemb_9(100%)|SNARE_assoc(100%) 3 5 3 308 188 ENST00000525069.5 ENST00000528080.6 upstream downstream none AAGCATACTGTCTACGCTGTGAATGCAAATATGAAGAAAGAAGCTCTGTCACAATCAAG___GTTACCATTATAATTTATCTCTCCATTTTGtGCCTTCTACTT...CTCTGGTTGAGCCCATACTGAAGAGGCGCCTCTTTGGACATGCACAGTTGATACAGAGTGATGATGATATTGGG___GATCACCAGCCTTTTGCAAATGCACACGATGTGCTAGCCCGCTCCCGCAGTCGAGCCAACGTGCTGAACAAGGTAGAATATGCACAGCAGCGCTGGAAGCTTCAAGTCCAAGAGCAGCGAAAGTCTGTCTTTGACCGGCATGTTGTCCTCAGCTAATTGGGAATTGAATTCAAG|AGAAGAAAGAGTGAATATGAAGGTTCCCAGAGATATGGATGATGCCAAGGCTCTAGGAAAAGTTTTATCCAAATACAAGGACACCTTTTATGTTCAAGTACTTGTAGCTTATTTTGCTACATATATTTT___...AAGTGTAAAAGGTCTGCTCTTCATTTATACATAACTATTTTCCTTTTAAAATTTGTTATTGCAG...___CTTGCAAACATTTGCTATTCCAGGCTCTATATTTCTCAGTATACTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1850 SGK3::COPS5 ENSG00000104205.16::ENSG00000121022.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 296 TRUE 115 SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66775319:+ chr8:67624969-67774257:+ chr8:67687554:+ COPS5 ENSG00000121022.14 protein_coding - - chr8:67043079-67083783:- chr8:67069203:- chr8:67955314-67996018:- chr8:67981438:- chr8:66786641,chr8:66786639 chr8:67071652,chr8:67071654 NA NA chr8:67698876,chr8:67698874 chr8:67983887,chr8:67983889 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none |Cop9_signalosome_subunit_5_C-terminal_domain(100%),JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%) |CSN5_C(100%),JAB(100%) 1 0 5 35 15 ENST00000396596.2 ENST00000519963.5 downstream downstream none GCGGGGCCTGCAGGTTTGGCCCCCGCAGGGAGCGCAGCTGGCGCCGCTGGGAGCTGGTGGCGCGGCGCAGGTCCCGGCCGAGTGTGGCGCAGCAGTGGCGGCGCTTCCCATTCGCCATGCGCCGGGGGTGGGTGCCCGAAG|CCAAAGAACACCAGGAAAACTACCACAGTTAAGTTGGATGTACTACTCATTGCATTAAGGAATGCACGGAGAACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1851 SGK3::COPS5 ENSG00000104205.16::ENSG00000121022.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 296 TRUE 115 SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66775319:+ chr8:67624969-67774257:+ chr8:67687554:+ COPS5 ENSG00000121022.14 protein_coding - - chr8:67043079-67083783:- chr8:67059445:- chr8:67955314-67996018:- chr8:67971680:- chr8:66786641,chr8:66786639 chr8:67071652,chr8:67071654 NA NA chr8:67698876,chr8:67698874 chr8:67983887,chr8:67983889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Cop9_signalosome_subunit_5_C-terminal_domain(100%),JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%) |CSN5_C(100%),JAB(100%) 0 5 3 35 2728 ENST00000396596.2 ENST00000518374.5 downstream downstream duplicates(1) GCAGGTTTGGCCCCCGCAGGGAGCGCAGCTGGCGCCGCTGGGAGCTGGTGGCGCGGCGCAGGTCCCGGCCGAGTGTGGCGCAGCAGTGGCGGCGCTTCCCATTCGCCATGCGCCGGGGGTGGGTGCCCGAAG|TCACCATTACTTTAAGTACTGCAAAATCTCAGCATTGGCTCTGCTGAAGATGGTGATGCATGCCAGATCGGGAGGCAACTTGGAAGTGATGGGTCTGATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGTAAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1852 SGK3::COPS5 ENSG00000104205.16::ENSG00000121022.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 296 TRUE 115 SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66775318:+ chr8:67624969-67774257:+ chr8:67687553:+ COPS5 ENSG00000121022.14 protein_coding - - chr8:67043079-67083783:- chr8:67059447:- chr8:67955314-67996018:- chr8:67971682:- chr8:66786641,chr8:66786639 chr8:67071652,chr8:67071654 NA NA chr8:67698876,chr8:67698874 chr8:67983887,chr8:67983889 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none |Cop9_signalosome_subunit_5_C-terminal_domain(100%),JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%) |CSN5_C(100%),JAB(100%) 0 1 3 35 2728 ENST00000396596.2 ENST00000521509.5 downstream downstream none GCAGGTTTGGCCCCCGCAGGGAGCGCAGCTGGCGCCGCTGGGAGCTGGTGGCGCGGCGCAGGTCCCGGCCGAGTGTGGCGCAGCAGTGGCGGCGCTTCCCATTCGCCATGCGCCGGGGGTGGGTGCCCGAA|AGTCcCCATTACTTTAAGTACTGCAAAATCTCAGCATTGGCTCTGCTGAAGATGGTGATGCATGCCAGATCGGGAGGCAACTTGGAAGTGATGGGTCTGATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGTAAATGCTCAGGCTGCTGCATATGAATACATGGCTGCATACATAGAAAATGCAAAACAG___GTTGGCCGCCTTGAAAATGCAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1853 SGK3::COPS5 ENSG00000104205.16::ENSG00000121022.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 296 TRUE 115 SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66712833:+ chr8:67624969-67774257:+ chr8:67625068:+ COPS5 ENSG00000121022.14 protein_coding - - chr8:67043079-67083783:- chr8:67059445:- chr8:67955314-67996018:- chr8:67971680:- chr8:66786641,chr8:66786639 chr8:67071652,chr8:67071654 NA NA chr8:67698876,chr8:67698874 chr8:67983887,chr8:67983889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Cop9_signalosome_subunit_5_C-terminal_domain(100%),JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%) |CSN5_C(100%),JAB(100%) 0 3 0 32 2728 ENST00000523401.5 ENST00000518374.5 downstream downstream duplicates(1),mismatches(1) GAAGGAGGAAGCGCAGTGCGTTCGGCTCCGCGCCCGCCGCGCCGGGAGCAGCACCGCGGGGCCAG|TCACCATTACTTTAAGTACTGCAAAATCTCAGCATTGGCTCTGCTGAAGATGGTGATGCATGCCAGATCGGGAGGCAACTTGGAAGTGATGGGTCTGATGCTAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGTAAATGCTCAGGCTGCTGCATATGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1855 SGK3::COPS5 ENSG00000104205.16::ENSG00000121022.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 296 TRUE 115 SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66712833:+ chr8:67624969-67774257:+ chr8:67625068:+ COPS5 ENSG00000121022.14 protein_coding - - chr8:67043079-67083783:- chr8:67061422:- chr8:67955314-67996018:- chr8:67973657:- chr8:66786641,chr8:66786639 chr8:67071652,chr8:67071654 NA NA chr8:67698876,chr8:67698874 chr8:67983887,chr8:67983889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Cop9_signalosome_subunit_5_C-terminal_domain(100%),JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%) |CSN5_C(100%),JAB(100%) 0 1 0 32 48 ENST00000521198.7 ENST00000523890.5 downstream downstream none CGGCTCCGCGCCCGCCGCGCCGGGAGCAGCACCGCGGGGCCAG|AAATGGGTCCTCGCTGTGTTGCTCAGGCTGATCTCGAGCTTCTGCCTTCAAGCGATCC...TAGGAAAGGTGGATGGTGAAACCATGATCATTATGGACAGTTTTGCTTTGCCTGTGGAGGGCACTGAAACCCGAGTAAATGCTCAGGCTGCTGCATATGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1856 ZFAT::MIR548XHG ENSG00000066827.16::ENSG00000224141.6 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134564987:- chr8:135490031-135725292:- chr8:135577230:- MIR548XHG ENSG00000224141.6 lncRNA - + chr21:18561265-18760320:- chr21:18701022:+ chr21:19933583-20132638:- chr21:20073340:+ chr8:134555880,chr8:134555885 chr21:18694355,chr21:18694349 NA NA chr8:135568123,chr8:135568128 chr21:20066673,chr21:20066667 NA NA sense antisense unknown 3'UTR/splice-site intron translocation/5'-5' high none C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(100%)| AT_hook(100%),zf-C2H2(100%),zf-H2C2_5(100%),zf-met(100%)| 0 1 3 5 7 ENST00000523243.5 unknown upstream upstream none AGCATGTCTCCTTCAAG___AAGCGTAGCATTGCTCTGTAATTTGGAAACCAAGTCAAAGATGTGTAAGAGGATGCAGACAGAAGAAAAGGCACGATCTTTGCATA...ATTTTTGCTTTCAGATCCTGGATTGCTGCAG|GATATTTATTGCAGTTATTTTCTTCTTGTTGCCCTACTGCATGTGAGGAATTGAAGAAGCAGATGAGCTG...TGAATGAAaAACCCAgGGAaAGAGAGGGCCAACTGTATAAAGAGTCAGGAATAAGAGAAGAATTCTCATTATTATATCTTCGATTCATCATCGTATGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1859 ZNF704::CASC11 ENSG00000164684.13::ENSG00000249375.8 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80687226:- chr8:81540686-81787016:- chr8:81599461:- CASC11 ENSG00000249375.8 lncRNA - + chr8:127686343-127738987:- chr8:127712344:+ chr8:128698588-128751233:- chr8:128724589:+ chr8:80683006,chr8:80683008 chr8:127707292,chr8:127707290 NA NA chr8:81595241,chr8:81595243 chr8:128719537,chr8:128719535 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 2 0 1 22 1 ENST00000327835.7 unknown upstream upstream none GCGGATCCTGGAAGGAGGGCGGCTGCGTGCCTTCCAGCACCAGCAGCAGCGGCTACTGGAGCTGGAGCGCCCCCAGCGACCAGTCCAACCCGTCCACGCCGTCGCCGCCGCTCTCGGCTGACAGCTTCAAGCCCTTCCGCAGCCCCGCGCAGCCAGACGACGGCATCGACGAGGCGGAGGCCAGCAACCTGCTCTTCGACGAGCCCATTCCCAGGAAAAGAAAG|TGCCTGGGCAAATTTCCAAGAAAGAAGAAGCAGAAATGAAC...CAAAGCTTCTTGAAGCCTAAGCTTGGAACTGGTACATCATCAACTCCATCTCATTTTTGTGTCCAAAGCAAGTCACAAGGCCAACCCAGATCCAGGGGAAG GSWKEGGCVPSSTSSSGYWSWSAPSDQSNPSTPSPPLSADSFKPFRSPAQPDDGIDEAEASNLLFDEPIPRKRK|clgkfprkkkqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1879 ZNF274::ZNF8-ERVK3-1 ENSG00000171606.18::ENSG00000267216.1 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58183442:+ chr19:58694396-58724928:+ chr19:58694809:+ ZNF8-ERVK3-1 ENSG00000267216.1 lncRNA + + chr19:58278966-58315197:+ chr19:58312166:+ chr19:58790332-58826563:+ chr19:58823532:+ chr19:58183711,chr19:58183710 chr19:58309403,chr19:58309399 NA NA chr19:58695078,chr19:58695077 chr19:58820769,chr19:58820765 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through medium none none none 6 6 9 111 816 ENST00000424679.6 ENST00000591325.1 downstream upstream duplicates(1),inconsistently_clipped(1),low_entropy(1),mismatches(7) CCCCTTGCCTAGCTGGACCGCCGAGGGACATCGACGAGTATCCTCCTCCTGCTGTCCCCGGCTTCGCCTGCCGCCCCTAACCGGCCAGTCAAGATGGCCGCCGCTGGGTGAGGCAAGCTGGCGCGCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGGACGGCGGGCTGACGCACTTCGCCGCCGGCCGACGGGCGCCATTGTGCGGCGCGCGCCGG|GAGATGGACAAACCGTGTGGGTGCCCTCCAGGTGTGTGTGACCATGGAACGGGAGACCGGAGGGATCCATGGTATTCAACCGTGGGCCTGTTACCTCCAGTACGAGCCATGAGCCAGCGGAATCTGAATGCAAAGACAGAACAAGGGCCGACCGGAGTCACAATGACATCCAACCCCATAACATGGGGACAGATCAAGAAAACGACACAAGAAGCTGAGAAACTACTGGAGCGCCAGGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1880 ZNF274::ERVK3-1 ENSG00000171606.18::ENSG00000142396.11 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 175 TRUE 300 TRUE 116 ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58183442:+ chr19:58694396-58724928:+ chr19:58694809:+ ERVK3-1 ENSG00000142396.11 protein_coding + + chr19:58305374-58316812:+ chr19:58312166:+ chr19:58816740-58828178:+ chr19:58823532:+ chr19:58183711,chr19:58183710 chr19:58309403,chr19:58309399 NA NA chr19:58695078,chr19:58695077 chr19:58820769,chr19:58820765 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Rec_(regulator_of_expression_encoded_by_corf)_of_HERV-K-113(100%) |HERV-K_REC(100%) 6 6 9 111 816 ENST00000424679.6 ENST00000413518.6 downstream upstream duplicates(1),inconsistently_clipped(1),low_entropy(1),mismatches(7) CCCCTTGCCTAGCTGGACCGCCGAGGGACATCGACGAGTATCCTCCTCCTGCTGTCCCCGGCTTCGCCTGCCGCCCCTAACCGGCCAGTCAAGATGGCCGCCGCTGGGTGAGGCAAGCTGGCGCGCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGGACGGCGGGCTGACGCACTTCGCCGCCGGCCGACGGGCGCCATTGTGCGGCGCGCGCCGG|GAGATGGACAAACCGTGTGGGTGCCCTCCAGGTGTGTGTGACCATGGAACGGGAGACCGGAGGGATCCATGGTATTCAACCGTGGGCCTGTTACCTCCAGTACGAGCCATGAGCCAGCGGAATCTGAATGCAAAGACAGAACAAGGGCCGACCGGAGTCACAATGACATCCAACCCCATAACATGGGGACAGATCAAGAAAACGACACAAGAAGCTGAGAAACTACTGGAGCGCCAGGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1881 ZNF274::ERVK3-1 ENSG00000171606.18::ENSG00000142396.11 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 300 TRUE 116 ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58183442:+ chr19:58694396-58724928:+ chr19:58694809:+ ERVK3-1 ENSG00000142396.11 protein_coding + + chr19:58305374-58316812:+ chr19:58312021:+ chr19:58816740-58828178:+ chr19:58823387:+ chr19:58183711,chr19:58183710 chr19:58309403,chr19:58309399 NA NA chr19:58695078,chr19:58695077 chr19:58820769,chr19:58820765 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Rec_(regulator_of_expression_encoded_by_corf)_of_HERV-K-113(100%) |HERV-K_REC(100%) 0 1 9 111 107 ENST00000424679.6 ENST00000608004.1 downstream upstream duplicates(1),mismatches(4) GTCCCTCACCAGAGGCCTCCCCTTGCCTAGCTGGACCGCCGAGGGACATCGACGAGTATCCTCCTCCTGCTGTCCCCGGCTTCGCCTGCCGCCCCTAACCGGCCAGTCAAGATGGCCGCCGCTGGGTGAGGCAAGCTGGCGCGCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGGACGGCGGGCTGACGCACTTCGCCGCCGGCCGAC?GGCGCCATTGTGCGGCGCGCGCCGG|ACCCCAGCAGAACGACACTGGCAACTGCTAGAGGAAAAGAG___GAGATGGACAAACCGTGTGGGTGCCCTCCAGGTGTGTGTGACCATGGAACGGGAGACCGGAGGGATCCATGGTATTCAACCGTGGGCCTGTTACCTCCAGTACGAGCCATGAGCCAG...CAGAAGGAATGCTGGGGGCAGTCATGTCCCAGGTCCCGTGCTCCTTGAGGTTATCCACAGGAACATCCAGAACCTGTTGAACAAAGAAAGGAATCATGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1882 ZNF274::ENSG00000283515 ENSG00000171606.18::ENSG00000283515.1 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58183442:+ chr19:58694396-58724928:+ chr19:58694809:+ ENSG00000283515 ENSG00000283515.1 protein_coding + + chr19:58228914-58315183:+ chr19:58312166:+ chr19:58740280-58826549:+ chr19:58823532:+ chr19:58183711,chr19:58183710 chr19:58309403,chr19:58309399 NA NA chr19:58695078,chr19:58695077 chr19:58820769,chr19:58820765 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site deletion/read-through medium none none |HERV-K_REC(100%) 6 6 9 111 816 ENST00000424679.6 ENST00000637233.1 downstream upstream duplicates(1),inconsistently_clipped(1),low_entropy(1),mismatches(7) CCCCTTGCCTAGCTGGACCGCCGAGGGACATCGACGAGTATCCTCCTCCTGCTGTCCCCGGCTTCGCCTGCCGCCCCTAACCGGCCAGTCAAGATGGCCGCCGCTGGGTGAGGCAAGCTGGCGCGCCGCGGGGGCGTCTGGGAGTTGTAGTTCGGGACGGCGGGCTGACGCACTTCGCCGCCGGCCGACGGGCGCCATTGTGCGGCGCGCGCCGG|GAGATGGACAAACCGTGTGGGTGCCCTCCAGGTGTGTGTGACCATGGAACGGGAGACCGGAGGGATCCATGGTATTCAACCGTGGGCCTGTTACCTCCAGTACGAGCCATGAGCCAGCGGAATCTGAATGCAAAGACAGAACAAGGGCCGACCGGAGTCACAATGACATCCAACCCCATAACATGGGGACAGATCAAGAAAACGACACAAGAAGCTGAGAAACTACTGGAGCGCCAGGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1891 TPD52::PCAT1 ENSG00000076554.16::ENSG00000253438.5 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 303 TRUE 117 TPD52 ENSG00000076554.16 protein_coding - - chr8:80034745-80231232:- chr8:80171425:- chr8:80946980-81143467:- chr8:81083660:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126734159:+ chr8:127568568-128431295:+ chr8:127746404:+ chr8:80150887,chr8:80150890 chr8:126722884,chr8:126722881 NA NA chr8:81063122,chr8:81063125 chr8:127735129,chr8:127735126 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none none none 2 4 2 3488 17 ENST00000518937.6 unknown upstream upstream duplicates(1),inconsistently_clipped(1),mismatches(3) GCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGG?GCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAG|GGTGGAACAAGCTTGAAAACTAGGAGGTCCAGTCAACAAGTTAGCTGCGATGCATTCAAGCAGA___TTCTaTTTTAGGATATCTGGA MDRGEQ|gwnklen* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1892 TPD52::PCAT1 ENSG00000076554.16::ENSG00000253438.5 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 303 TRUE 117 TPD52 ENSG00000076554.16 protein_coding - - chr8:80034745-80231232:- chr8:80171425:- chr8:80946980-81143467:- chr8:81083660:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126877672:+ chr8:127568568-128431295:+ chr8:127889917:+ chr8:80150887,chr8:80150890 chr8:126722884,chr8:126722881 NA NA chr8:81063122,chr8:81063125 chr8:127735129,chr8:127735126 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 7 1 3488 26 ENST00000518937.6 ENST00000645463.1 upstream upstream mismatches(1) GAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAG|AgGAGGCAGAGGATGTTGACACAAACTTACAGACTGGGACTCCAAGGATCAGCCAGATGAAATGCTATGTGCAGAGTCTTCATTTCCCAGCTCAGTGGTGGACAGCAGAG...TCTAAG___ATCCAGCCACCTCTTGGGATGCACACGTTTCTCTTCAACTGCGTGATGTGAACTGCGTCACATG___ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGA MDRGEQ|eeaedvdtnlqtgtprisqmkcyvqslhfpaqwwta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1905 CFAP418-AS1::SULF1 ENSG00000253773.5::ENSG00000137573.14 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CFAP418-AS1 ENSG00000253773.5 lncRNA + + chr8:95204456-95811254:+ chr8:95268890:+ chr8:96216684-96823482:+ chr8:96281118:+ SULF1 ENSG00000137573.14 protein_coding + + chr8:69466624-69660915:+ chr8:69627210:+ chr8:70378859-70573150:+ chr8:70539445:+ chr8:95333807,chr8:95333859,chr8:95333859 chr8:69625291,chr8:69625291,chr8:69625288 NA NA chr8:96346035,chr8:96346087,chr8:96346087 chr8:70537526,chr8:70537526,chr8:70537523 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Sulfatase_protein(42%) |DUF3740(16%) 0 3 0 11 4 ENST00000655917.1 ENST00000458141.6 downstream upstream none CCAGAATCCGCGAAGAGGGTCGACGAATGCGCTGCCGCGGAGG|GTGTTTTATTCTTCCCAATGACTCTATCCATTGTGAGAGAGAACTGTACCAATCGGCCAGAGCGTGGAAGGACCATAAGG...ATTGACAAAGAG___ATTGAAGCTCTGCAAGATAAAATTAAGAATTTAAGAGAAGTGAGAGGACATCTGAAGAGAAGGAAGCCTGAGGAATGTAGCTGCAGTAA...CTCACTTGCTTCACGCATGACAACAACCACTGGCAGACAGCCCCGTTCTGGAACC___CTCACAAATACAGTGCACACGGTAGAACGAGGCATTTTGAATCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1913 SLC39A11::LINC00511 ENSG00000133195.12::ENSG00000227036.10 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 307 TRUE 118 SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72717746:- chr17:70642088-71088851:- chr17:70713885:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72431224:- chr17:70286232-70636611:- chr17:70427365:- NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site deletion/read-through low none ZIP_Zinc_transporter(65%)| Zip(84%)| 0 3 0 208 101 unknown ENST00000701652.1 upstream downstream none GGGAGAGCTACAGAGCAAGAGTGACCTGTCCTGTAAGTTCCAGAATAAGGAGCGATGCTGAAGTCATGCACCCCAGAAAG|GTATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAGCACGGCCTCCTGCCTTCCT...GAGAACGTG___GTGGAATCAGAGGTTTCTGGCTGACTCGGTGGGTGCTTTGAACCAGGAAAGGACAAGAAAGAG___GATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1914 SLC39A11::LINC00511 ENSG00000133195.12::ENSG00000227036.10 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 307 TRUE 118 SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72736650:- chr17:70642088-71088851:- chr17:70732789:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72431224:- chr17:70286232-70636611:- chr17:70427365:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none ZIP_Zinc_transporter(65%)| Zip(79%)| 0 1 0 155 101 ENST00000255559.8 ENST00000648631.1 upstream downstream none TACCTTTGAGAGTGCCAG|GTATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAGCACGGCCTCCTGCCTTCCTGGTGCACTTTTTGGAGAACGTG___GTGGAATCAGAGGTTTCTGGCTGACTCGGTGGGTGCTTTGAACCAGGAAAGGAC TFESAr|yfslstlvfscnvwppfparppaflvhflenvvesevsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1919 IKBKB::ENSG00000253363 ENSG00000104365.16::ENSG00000253363.7 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 308 TRUE 119 IKBKB ENSG00000104365.16 protein_coding + + chr8:42271302-42332460:+ chr8:42309025:+ chr8:42128820-42189978:+ chr8:42166543:+ ENSG00000253363 ENSG00000253363.7 lncRNA - - chr8:36378069-36779209:- chr8:36427064:- chr8:36235587-36636727:- chr8:36284582:- NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site exon/splice-site inversion low none Protein_kinase_domain(78%)| Kdo(100%),PK_Tyr_Ser-Thr(84%),Pkinase(79%),Pkinase_fungal(74%)| 1 0 0 78 0 ENST00000520810.6 ENST00000656455.1 downstream downstream none TTTGCACATCATTCGTGGGGACCCTGCAGTACCTG___GCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCACCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTG|AAAAATTCAAACCCCTATTGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Inhibitor of nuclear factor kappa-B kinase subunit beta Other IKK O14920 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 1 Yes SMZL leukaemia_lymphoma oncogene missense FALSE NA NA NA NA NA NA NA NA NA 1920 IKBKB::ENSG00000253363 ENSG00000104365.16::ENSG00000253363.7 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 308 TRUE 119 IKBKB ENSG00000104365.16 protein_coding + + chr8:42271302-42332460:+ chr8:42306432:+ chr8:42128820-42189978:+ chr8:42163950:+ ENSG00000253363 ENSG00000253363.7 lncRNA - - chr8:36378069-36779209:- chr8:36537476:- chr8:36235587-36636727:- chr8:36394994:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Protein_kinase_domain(63%)| Kdo(100%),PK_Tyr_Ser-Thr(77%),Pkinase(72%),Pkinase_fungal(62%)| 1 0 0 92 0 ENST00000520810.6 ENST00000524132.6 downstream downstream none CAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGACCCTGCAGTACCTG|GAAGTCAGGGACCCCCAAATGGAGAGACCAGCTGGAGCCGAGGCAGAAGAACATAAATTGTGAA KIIDLGYAKELDQGSLCTSFVGTLQYL|evrdpqmerpagaeaeehkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Inhibitor of nuclear factor kappa-B kinase subunit beta Other IKK O14920 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 1 Yes SMZL leukaemia_lymphoma oncogene missense FALSE NA NA NA NA NA NA NA NA NA 1922 CLDN14-AS1::OPCML ENSG00000233818.1::ENSG00000183715.15 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLDN14-AS1 ENSG00000233818.1 lncRNA + + chr21:36445731-36532408:+ chr21:36446007:+ chr21:37818029-37904706:+ chr21:37818305:+ OPCML ENSG00000183715.15 protein_coding - - chr11:132414977-133532501:- chr11:132657319:- chr11:132284871-133402396:- chr11:132527214:- chr21:36529926 chr11:132809895 NA NA chr21:37902224 chr11:132679790 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Immunoglobulin_I-set_domain(88%),Immunoglobulin_domain(100%) |I-set(18%),Ig_2(53%),Ig_3(100%),V-set(0%),ig(13%) 0 1 0 23 1 ENST00000428667.1 ENST00000524381.6 downstream downstream none CTACAGCTAACATCATATCACATGATGAAAGACCGCGTTGTTTTCCCCTGAGGTTGGCA|GTGTACCATAGATGACCGGGTAACCCGGGTGGCCTGGCTAAACCGCAGCACCATCCTCTACGCTGGGAATGACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1926 IQGAP1::IDH2-DT ENSG00000140575.13::ENSG00000259685.3 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 310 TRUE 120 IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90426266:+ chr15:90931474-91045471:+ chr15:90969498:+ IDH2-DT ENSG00000259685.3 lncRNA + + chr15:90102649-90138016:+ chr15:90128424:+ chr15:90645881-90681248:+ chr15:90671656:+ chr15:90427404,chr15:90427678,chr15:90427404 chr15:90125208,chr15:90125245,chr15:90125205 NA NA chr15:90970636,chr15:90970910,chr15:90970636 chr15:90668440,chr15:90668477,chr15:90668437 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Calponin_homology_(CH)_domain(51%)| CH(73%)| 11 11 40 776 43 ENST00000268182.10 unknown downstream upstream duplicates(17),mismatches(3) GCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG___GTGGATGGAAGCATGCCTAGGGGAAGATCTGCCTCCCACCACAGAACTGGAGGAGGGGCTTAGGAATGGGGTCTACCTTGCCAAACTGGGGAACTTCTTCTCTCCCAAAGTAGTGTCCCTGAAAAAAATCTATGATCGAGAACAGACCAGATACAAG|CACAGAGGCAGTAGTAGAAGCCATGAGTCTGATAAGTTTGCTGAAGGAGAGAGTGTGCTATGAGGACGGATCGTTGACAAGACCCTGGAGGACACAAGGACCTAAGAGCCCCTAAGAGGAGACAGAGAAGGTGCTGTCCCACAAAGTGCAAGATGTCCCAGGAGAGAGGTGTCCAGGGGATGACTGTGCGGGGGAAGCTCCGAAGTGGACAAGTCAACGAGCACCGGAAGGTGTCCCA ARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK|hrgssrshesdkfaegesvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1927 IQGAP1::IDH2-DT ENSG00000140575.13::ENSG00000259685.3 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 310 TRUE 120 IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90426266:+ chr15:90931474-91045471:+ chr15:90969498:+ IDH2-DT ENSG00000259685.3 lncRNA + + chr15:90102649-90138016:+ chr15:90133397:+ chr15:90645881-90681248:+ chr15:90676629:+ chr15:90427404,chr15:90427678,chr15:90427404 chr15:90125208,chr15:90125245,chr15:90125205 NA NA chr15:90970636,chr15:90970910,chr15:90970636 chr15:90668440,chr15:90668477,chr15:90668437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Calponin_homology_(CH)_domain(51%)| CH(73%)| 22 15 19 776 67 ENST00000268182.10 ENST00000561101.3 downstream upstream duplicates(13),low_entropy(1),mismappers(1),mismatches(5) GACGGGCTGGGCGTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG___GTGGATGGAAGCATGCCTAGGGGAAGATCTGCCTCCCACCACAGAACTGGAGGAGGGGCTTAGGAATGGGGTCTACCTTGCCAAACTGGGGAACTTCTTCTCTCCCAAAGTAGTGTCCCTGAAAAAAATCTATGATCGAGAACAGACCAGATACAAG|ACTCAGCCCACCTGCACTGAGGTGAAATAAACAGCTTTATTGCTCACACAAAGCCTGTTGGTGGACTCTCTTCACATTGATGCGCGTGACATTTTGTGCTGTGACTTGGATTGGGGGCCCTTCCTTGGGAGATCAATCCCCTGTCCTCCTGCTCTTTGCTCCAGGAGAAAGATCCACCACGACCTTGGGTCTTCGGACCAACCAGCCCAAGGAACATCTCACCAATTTTAAATCGG DGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK|tqptctevk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1928 IQGAP1::IDH2-DT ENSG00000140575.13::ENSG00000259685.3 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 310 TRUE 120 IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90390873:+ chr15:90931474-91045471:+ chr15:90934105:+ IDH2-DT ENSG00000259685.3 lncRNA + + chr15:90102649-90138016:+ chr15:90133397:+ chr15:90645881-90681248:+ chr15:90676629:+ chr15:90427404,chr15:90427678,chr15:90427404 chr15:90125208,chr15:90125245,chr15:90125205 NA NA chr15:90970636,chr15:90970910,chr15:90970636 chr15:90668440,chr15:90668477,chr15:90668437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Calponin_homology_(CH)_domain(4%)| CH(0%)| 1 0 6 771 67 ENST00000268182.10 ENST00000561101.3 downstream upstream duplicates(1) CGCGCCTCCAAGGTTTCACGGCTTCCTCAGCAGAGACTCGGGCTCGTCCGCCATGTCCGCCGCAGACGAGGTTGACGGGCTGGGCGTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG|ACTCAGCCCACCTGCACTGAGGTGAAATAAACAGCTTTATTGCTCACACAAAGCCTGTTGGTGGACTCTCTTCACATTGATGCGCGTGACATTTTGTGCTGTGACTTGGATTGGGGGCCCTTCCTTGGGAGATCAATCCCCTGTCCTCCTGCTCTTTGCTCCAGGAGAAAGATCCACCACGACCTTGGGTCTTCGGACCAACCAGCCCAAGGAACATCTCACCAATTTTAAATCGG MSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKr|lsppalr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1929 CDC73::ENSG00000289995 ENSG00000134371.14::ENSG00000289995.1 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000289995 ENSG00000289995.1 lncRNA + + chr1:192609359-192634544:+ chr1:192634009:+ chr1:192578489-192603674:+ chr1:192603139:+ chr1:193129622 chr1:192625965 NA NA chr1:193098752 chr1:192595095 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 3 8 13 316 24 ENST00000367435.5 ENST00000702390.1 downstream upstream duplicates(10) AGGAGATTGTGGTGAAGGGAGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|CAAACCAGAGGGGACGGGAGACTGGTCAAGTCTCTGAGTCGTCCACTCCAAGATGCGGACAATGAGTGTATGAAGACAGACTGAGAATGCGCTGCAAAGAAGCTTGGAAGAAAATGAAGGCAGAGAGGACAGACCTGAAAGGCTAAGAGGGACAGATCAGCGTCCATGGAAAGCAGG...TCTTCCAAACACTGGCACAAACCACTGCCTACTGGATACATTTCACCAGACAATTCACCCCAGTGTCCAAGAGTTTATCTTGCTTCTAGAATATATTGAAAAGAGC EIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|qtrgdgrlvkslsrplqdadnecmktd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 1932 ENSG00000285280::CDC73 ENSG00000285280.2::ENSG00000134371.14 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192627341:- chr1:192136916-192926843:- chr1:192596471:- CDC73 ENSG00000134371.14 protein_coding + - chr1:193121983-193254815:+ chr1:193124307:- chr1:193091113-193223945:+ chr1:193093437:- chr1:192625965 chr1:193129622 NA NA chr1:192595095 chr1:193098752 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 1 3 5 4 ENST00000646999.1 unknown upstream downstream none TTTCTTTTaAAGTGGCAGCCAGGAGAAGAACCAGCAGGCTCTGTGGTTCAGGACTCCCGACTTGACACGATATTTTTTGCTAAGCAG___TTGATGACATAGAAGACTTAATTTCCTCCTCATGATTAAaCTCTCAGTTGGAGAGTATACACACTCTTACACAGAATCCAG|AATAGAAAAGAACAGAAAAATAAAATGCACTGCATACAATcAGAAGA___GAATCACCCCCACCCCAACAATGAAAGGAGAT...CCTGGAAAAGAGAAAAAAAAA-TAAAGAACAAAAAGAGGCGTCTACGGCACCAGACGGTGTGCTCCTTTGTGCACCTATGTTCAGGTATCCCTTGCGCACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1934 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193049746:- chr1:192981380-193029210:- chr1:193018876:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192627421:- chr1:192136916-192926843:- chr1:192596551:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Ubiquitin_carboxyl-terminal_hydrolase__family_1(37%)| Peptidase_C12(30%)| 2 0 0 336 7 ENST00000367455.8 ENST00000646999.1 upstream downstream duplicates(1) ATGGAGTTTAGAGCCTGAGAATTTTGAAAAATTAAA___GCCAGTTCATGGGTTAATTTTTCTTTTCAAGTGGCAGCCAGGAGAAGAACCAGCAGGCTCTGTGGT...CAGGACTCCCGACTTGACACGATATTTTTTGCTAAGCAG|TTGATGACATAGAAGACTTAATTTCCTCCTCATGATTAAaCTCTCAGTTGGAGAGTATACACACTCTTACACAGAAT QDSRLDTIFFAKQ|lmt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1961 SMG6::OVCH1 ENSG00000070366.14::ENSG00000187950.9 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2186663:- chr17:1963133-2207079:- chr17:2089957:- OVCH1 ENSG00000187950.9 protein_coding - - chr12:29412474-29497686:- chr12:29465219:- chr12:29565407-29650619:- chr12:29618152:- chr17:2114623,chr17:2114627 chr12:29466845,chr12:29466846 NA NA chr17:2017917,chr17:2017921 chr12:29619778,chr12:29619779 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Est1_DNA/RNA_binding_domain(85%),Telomerase_activating_protein_Est1(100%)|CUB_domain(47%),Trypsin(41%) EST1(100%),EST1_DNA_bind(88%)|CUB(39%),DUF1986(9%),Trypsin(53%) 0 1 0 173 1 ENST00000263073.11 ENST00000318184.9 upstream downstream none CGGACACCTGGAATCCTCCTCCCACATCCCTGGATCTGCCCTCGCA|GAAGAATAATCCACTCTCCTGGACTATTATTGCTGGGGACCATGACAGAAACCTGAAGGAATCAACAGAGCAG___GTGAGAAGGGCCAAACACATAATAGTGCATGAAGACTTTAACACACTAAGTTATGACTCTGACATTGCCCTAATACAACTAAG DTWNPPPTSLDLPSq|KNNPLSWTIIAGDHDRNLKESTEQVRRAKHIIVHEDFNTLSYDSDIALIQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1963 FBRS::ZNF771 ENSG00000156860.16::ENSG00000179965.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 176 FALSE NA FALSE NA FBRS ENSG00000156860.16 protein_coding + + chr16:30658431-30670810:+ chr16:30667622:+ chr16:30669752-30682131:+ chr16:30678943:+ ZNF771 ENSG00000179965.12 protein_coding + + chr16:30407414-30431108:+ chr16:30428880:+ chr16:30418735-30442429:+ chr16:30440201:+ chr16:30668164,chr16:30668165 chr16:30422693,chr16:30422686 NA NA chr16:30679485,chr16:30679486 chr16:30434014,chr16:30434007 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Autism_susceptibility_gene_2_protein(44%)| Auts2(32%)|MazG(4%),MazG-like(4%) 46 39 64 866 152 ENST00000356166.11 ENST00000566625.2 downstream upstream duplicates(22),mismatches(5) TGTGCCATGCACGTGCGTGTGGCTTACATGATCCTGAGACACCAGGAGAAAATGAAG___GGTGACTCCCACAAGCTTGACTTTCGGAATGACCTCCTGCCCTGCCTTCCGGGGCCCTATGGGGCCCTGCCCCCTGGGCAGGAGCTCTCCCACCCGGCCTCCCTCTTCACTGCGACTG___GTGCCGTCCACGCTGCAGCCAACCCTTTCACGGCAGCTCCCGGGGCCCACGGACCCTTCCTGAGCCCCAGCACCCACATTG|GAGGCTGAGTGCCCCTAGAGGGCAGGGACCCGTGAGTCCTCTCTGCATCCCAACAACAGCAAAGAGCCTAGCAATCAGGAGGGGAAACTGAACCCATGAATGTTTGAAGACCAAATAAATGCTCCCCTCCCCTCCCCCACAACTCAGACTCTACCAGGAAGCTTTCCATCTACTCACAAGAGTTCTGCCAGCTCCCCCACTTCCCCAACCAAGGCCAGGAGGAGATTCCGAG CAMHVRVAYMILRHQEKMKGDSHKLDFRNDLLPCLPGPYGALPPGQELSHPASLFTATGAVHAAANPFTAAPGAHGPFLSPSTHI|gg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1964 ZFYVE9::USP33 ENSG00000157077.16::ENSG00000077254.14 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 177 FALSE NA FALSE NA ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52233276:+ chr1:52607761-52814343:+ chr1:52698948:+ USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77713281:- chr1:78161672-78225537:- chr1:78178966:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |DUSP_domain(78%) |DUSP(73%) 29 64 55 174 210 ENST00000371591.2 ENST00000370794.7 downstream downstream duplicates(39),mismatches(18) ACTGAATCAGCAGGACTGGCTGGTGGTGCAGCAGACATCATGAGTAAGCACCGAGAAGTCTGTTCCTTATCACGTGTGTAAGGGGAAAAAG___GTTTAAACAAGTCTCTTAAGTGGTGTTTCCTCACCGATGGAGAATTACTTCCAAGCAGAAGCTTACAACCTGGACAAGGTGTTAGATGAATTTGAACAAAACGAAG|GTGTTCCTCCAAGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAG___GTATGGTGGAGGACCAGCTGTCAACCATCTGTACATTTGTCATACTTGCCAAATTGAGGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG___CTTAACAGAGCGTTCCAAAAAGAGGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGT MENYFQAEAYNLDKVLDEFEQNE|gVPPRKAGYIEDLVLMLPQNIWDNLYSRYGGGPAVNHLYICHTCQIEAEKIEKRRKTELEIFIRLNRAFQKEDSPATFYCISMQWFREWESF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1965 ATAD5::PTGIS ENSG00000176208.9::ENSG00000124212.6 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30844916:+ chr17:29158984-29222887:+ chr17:29171934:+ PTGIS ENSG00000124212.6 protein_coding - + chr20:49503874-49568137:- chr20:49566506:+ chr20:48120411-48184674:- chr20:48183043:+ chr17:30864491,chr17:30864492,chr17:30864494,chr17:30864496,chr17:30864505,chr17:30864507,chr17:30864508,chr17:30864510,chr17:30864473,chr17:30864515,chr17:30864517,chr17:30864518,chr17:30864474,chr17:30864520,chr17:30864526,chr17:30864484,chr17:30864470,chr17:30864471,chr17:30864467,chr17:30864479,chr17:30864486 chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379,chr20:49565379 NA NA chr17:29191509,chr17:29191510,chr17:29191512,chr17:29191514,chr17:29191523,chr17:29191525,chr17:29191526,chr17:29191528,chr17:29191491,chr17:29191533,chr17:29191535,chr17:29191536,chr17:29191492,chr17:29191538,chr17:29191544,chr17:29191502,chr17:29191488,chr17:29191489,chr17:29191485,chr17:29191497,chr17:29191504 chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916,chr20:48181916 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 29 16 34 207 89 ENST00000321990.5 unknown downstream upstream duplicates(6),mismatches(4) TACTGCTTTAAAGCATCCAGAGAAAAATCAGAAGAAACTTCAGTGTTTGAATGATGTGCTAGGAAAAAAACTTAACACATCCACTAAAAATGTACCTG___GAAAAATGAAAGTCGCTCCTTTATTTCTTGTCAGAAAAGCACAAAAAGCAGCTGATCCTGTCCCTAGTTTTGATGAAAGCAG|GCAAATGATTGACTACACAGTTGTAAATTTCAGCTGAAAAGATGTCTGGAGGTTGAAGAAAAATACAGTGAGCTTATTGTTTGAAAAcTCAACTACCATATTGTTTAAAAATCAAAAAGTTCCCAAGGTTTCCGGAATTTTCAGACACGAATGTAAACTAACTCTCTCTTACGTGGCTCTGTATTAGCTACAAGCTCA TALKHPEKNQKKLQCLNDVLGKKLNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESr|qmidytvvnfs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1966 KIRREL1::ZFYVE9 ENSG00000183853.18::ENSG00000157077.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 178 TRUE 315 TRUE 121 KIRREL1 ENSG00000183853.18 protein_coding + + chr1:157993273-158100262:+ chr1:157993728:+ chr1:157963063-158070052:+ chr1:157963518:+ ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52237488:+ chr1:52607761-52814343:+ chr1:52703160:+ chr1:158019847,chr1:158019846 chr1:52235165,chr1:52235161 NA NA chr1:157989637,chr1:157989636 chr1:52700837,chr1:52700833 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF3480)(100%),FYVE_zinc_finger(100%),Smad_anchor_for_receptor_activation_(SARA)(100%) |DUF3480(100%),FYVE(100%),SARA(100%) 1 33 6 21 110 ENST00000368173.7 ENST00000371591.2 downstream upstream duplicates(6),inconsistently_clipped(1),mismatches(9) CGCTCCTCTGGCTCGCTCGCCAACTCCGGGCCCCAGCCGCGGGCGGGCGCACGGCGGGCGGACAGCATGCTGAGCCTCCTCGTCTGGATCCTCACTCTCTCCGATACTTTCTCCCAAG|ATGAAACAGTTTCTTCTACTTTATTGGATACAAAGTGGAATAAGATTCTAGATCCCCCTTCTCACCGGCTGTCATTTAACCCTACTTTGGCCAGTGTGAATGAATCTGCAGTTTCTAATGAGTCACAACCACAACTGAAAGTCTTCTCCCTGGCTCATTCAGCTCCCCTGACCACAGAGGAAGAGGATCACTGTGCTAATGGACAGGACTGTAATCTAAATCCAGAGATTGCCACAATGTGGATTGATGAAAATGCTGTTGCAGAAGACCAGTTAATTAAGAGAAACTATAGTTGGGATGATCAATGCAGTGC MLSLLVWILTLSDTFSQ|dETVSSTLLDTKWNKILDPPSHRLSFNPTLASVNESAVSNESQPQLKVFSLAHSAPLTTEEEDHCANGQDCNLNPEIATMWIDENAVAEDQLIKRNYSWDDQCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1967 KIRREL1::ZFYVE9 ENSG00000183853.18::ENSG00000157077.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 315 TRUE 121 KIRREL1 ENSG00000183853.18 protein_coding + + chr1:157993273-158100262:+ chr1:157993728:+ chr1:157963063-158070052:+ chr1:157963518:+ ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52263773:+ chr1:52607761-52814343:+ chr1:52729445:+ chr1:158019847,chr1:158019846 chr1:52235165,chr1:52235161 NA NA chr1:157989637,chr1:157989636 chr1:52700837,chr1:52700833 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Domain_of_unknown_function_(DUF3480)(100%),FYVE_zinc_finger(49%),Smad_anchor_for_receptor_activation_(SARA)(100%) |DUF3480(100%),FYVE(0%),SARA(100%) 0 1 0 21 210 ENST00000368173.7 ENST00000371591.2 downstream upstream none GCGGGtGGACAGCATGCTGAGCCTCCTCGTCTGGATCCTCACTCTCTCCGATACTTTCTCCCAAG|GTTTTCTGTGCTTCCTGCTGTAGCCTGAAATGTAAACTGTTATACATGGACAGAAAGGAAGCTAGAGTGTGT MLSLLVWILTLSDTFSQ|gflcfll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1970 CRLF3::CHD9 ENSG00000176390.12::ENSG00000177200.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30803901:- chr17:29096406-29151710:- chr17:29130919:- CHD9 ENSG00000177200.18 protein_coding + + chr16:53054991-53329150:+ chr16:53222644:+ chr16:53088903-53363062:+ chr16:53256556:+ chr17:30803659,chr17:30803661 chr16:53221572,chr16:53221570 NA NA chr17:29130677,chr17:29130679 chr16:53255484,chr16:53255482 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site translocation high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 9 11 14 113 634 ENST00000324238.7 ENST00000566029.5 upstream upstream duplicates(5),mismatches(2) CGCGGAG___ATCAAAGAAAGTGCATCACAGACAAGGGATGTTCTCAAACAGCATTTTAATGATTTAAAGGGAACCCTTGGAAAGCTCCTGGATGAGCGATTGGTGACCCTTTTGCAAGAGGTGGACACCATTGAACAGGAGACCATTAAACCACTAGATGACTGCCAGAAGCTCATAGAACACGGAGTCAACACTGCAGAGGACTTAGTCCGAGAAG|CAAACTCATTATTACATTGGGTAAGAAACAAAAAAGAAAGAATGAGTCTTCAGATGAAATATCTGATGCAGAACAGATGCCACAGCATACATTAAAAGATCAAGACTCTCAA___AAAAGAAGATCAAATCGACAAATTAAAAGAAAAAAATACGCAGAAGATATAGAAGGGAAGCAATCTGAAGAAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1974 PPME1::ENSG00000291174 ENSG00000214517.10::ENSG00000291174.1 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 316 TRUE 122 PPME1 ENSG00000214517.10 protein_coding + + chr11:74171267-74254703:+ chr11:74222369:+ chr11:73882312-73965748:+ chr11:73933414:+ ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65466085:+ chr11:65222728-65234191:+ chr11:65233556:+ chr11:74225034,chr11:74225036 chr11:65456290,chr11:65456290 NA NA chr11:73936079,chr11:73936081 chr11:65223761,chr11:65223761 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Alpha/beta_hydrolase_family(12%)| Abhydrolase_1(38%),Abhydrolase_6(38%),Hydrolase_4(69%)| 8 9 8 230 58 ENST00000328257.13 ENST00000309775.8 downstream upstream duplicates(5) AGTCGTGACCGGTTGGGCCACACTCAACGTGGGACGAAGCTTCGCCTACTGTTTGACTACGTGCGTGCAGCCTCCCCTCGATGTCGGCCCTCGAAAAGAGCATGCACCTCGGCCGCCTTCCCTCTCGCCCACCTCTACCCGGCAGCGGGGGCAGTCAGAGCGGAGCCAAGATGCGAATGGG___CCCTGGAAGAAAGCGGGACTTTTCCCCTGTTCCTTGGAGTCAGTATTTTGAGTCCATGGAAGATGTAGAAGTAGAGAATGAAACTGGCAAGGAT___ACTTTTCGA...CAGAGGGTCCAGTCCTGCTCCTTCTGCATGGAGGAGGTCATTCTGCCCTTTCTTGGGCTGTGTTCACG___GCAGCGATTATTAGTAGAGTTCAGTGTAGGATTGTAGCTTTGGATCTGCGAAGTCATG|GTAATAACTGCCTCTCACTGCAAGTCAACCCTGTACAACCAGCCAGATATTTGTGGACAACACTTCACAGCTCAAAACAAGGTGAACCTAACTCCTCAGCAAACCACAGATGCTCCTGAAAGTCTCCAAGGCCAGAAGAAAACCCCTAAACATATACCACACTGTGGCAACTGTAGCCTAGAAGGTAACGAATGAAGAACACAGCAAATATCTGAGAGTTGCTGCCTGAAGACACAGGACAATGACCTCAGAAGGATG EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSH|gnnclslqvnpvqparylwttlhsskqgepnssanhrcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1975 PPME1::ENSG00000291174 ENSG00000214517.10::ENSG00000291174.1 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 316 TRUE 122 PPME1 ENSG00000214517.10 protein_coding + + chr11:74171267-74254703:+ chr11:74222369:+ chr11:73882312-73965748:+ chr11:73933414:+ ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65456638:+ chr11:65222728-65234191:+ chr11:65224109:+ chr11:74225034,chr11:74225036 chr11:65456290,chr11:65456290 NA NA chr11:73936079,chr11:73936081 chr11:65223761,chr11:65223761 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Alpha/beta_hydrolase_family(12%)| Abhydrolase_1(38%),Abhydrolase_6(38%),Hydrolase_4(69%)| 6 6 11 230 55 ENST00000328257.13 ENST00000702924.1 downstream upstream duplicates(1) GCGGGACTTTTCCCCTGTTCCTTGGAGTCAGTATTTTGAGTCCATGGAAGATGTAGAAGcAGAGAATGAAACTGGCAAGGATtTtTC...CAGAGGGTCCAGTCCTGCTCCTTCTGCATGGAGGAGGTCATTCTGCCCTTTCTTGGGCTGTGTTCACG___GCAGCGATTATTAGTAGAGTTCAGTGTAGGATTGTAGCTTTGGATCTGCGAAGTCATG|ATGGTGAGTTTATAAAAGACTGTCTATTGAGTGCAGCGGAAATCATGTGTCCTGAACAGAAAGAAGCATTTGCAGACATAAGCCTAACCAGAAAAACTGTTGCTCAGAGAGTAAAAGATATGGCTGAGAATTTACAGGATAAGTTGTGAGAAAAAGTGAGATCATTTGTGACATTTTC EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSH|dgefikdcllsaaeimcpeqkeafadisltrktvaqrvkdmaenlqdkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1976 PPME1::ENSG00000291174 ENSG00000214517.10::ENSG00000291174.1 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 316 TRUE 122 PPME1 ENSG00000214517.10 protein_coding + + chr11:74171267-74254703:+ chr11:74204445:+ chr11:73882312-73965748:+ chr11:73915490:+ ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65466085:+ chr11:65222728-65234191:+ chr11:65233556:+ chr11:74225034,chr11:74225036 chr11:65456290,chr11:65456290 NA NA chr11:73936079,chr11:73936081 chr11:65223761,chr11:65223761 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Alpha/beta_hydrolase_family(6%)| Abhydrolase_1(0%),Abhydrolase_6(0%),Hydrolase_4(0%)| 0 2 5 215 58 ENST00000328257.13 ENST00000309775.8 downstream upstream none GCGGGACTTTTCCCCTGTTCCTTGGAGTCAGTATTTTGAGTCCATGGAAGATGTAGAAGTAGAGAATGAAACTGGCAAGGAT___ACTTTTCGAGTCTACAAGAGTGGTTCAGAGGGTCCAGTCCTGCTCCTTCTGCATGGAGGAGGTCATTCTGCCCTTTCTTGGGCTGTGTTCACG|GTAATAACTGCCTCTCACTGCAAGTCAACCCTGTACAACCAGCCAGATATTTGTGGACAACACTTCACAGCTCAAAACAAGGTGAACCTAACTCCTCAGCAAACCACAGATGCTCCTGAAAGTCTCCAAGGCCAGAAGAAAACCCCTAAACATATACCACACTGTGGCAACTGTAGCCTAGAAGGTAACGAATGAAG RDFSPVPWSQYFESMEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFT|vitashckstlynqpdicgqhftaqnkvnltpqqttdapeslqgqkktpkhiphcgncslegne* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1977 PIGL::PIPOX ENSG00000108474.17::ENSG00000179761.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 179 FALSE NA FALSE NA PIGL ENSG00000108474.17 protein_coding + + chr17:16217191-16351797:+ chr17:16326905:+ chr17:16120505-16255111:+ chr17:16230219:+ PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:29054545:+ chr17:27277531-27384234:+ chr17:27381563:+ chr17:16328788,chr17:16328832 chr17:29054059,chr17:29054081 NA NA chr17:16232102,chr17:16232146 chr17:27381077,chr17:27381099 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none GlcNAc-PI_de-N-acetylase(100%)|FAD_dependent_oxidoreductase(40%) PIG-L(100%)|DAO(12%) 7 6 8 27 26 ENST00000431149.5 ENST00000323372.9 downstream upstream duplicates(2),mismatches(1) TGAAAGCTCTGGCTTGGAAACTACTCTCAGAATCCAGCTAACGCTCCAGGGAAGTGGCCTGAGTCAGGGAAGCTAAGTGGTGAAGAGCACAGGCTGGTAGTCCTGCGATTGAAGCCAGAATGACCAGCTGTGTAACCAAAGGCAAGGTGCTGAACCTTTCTCTGCCTCAATTCTCTCATCTGCAAAATGGGAAATAATAATGATCCCAACCTCAGAGAACTGAACAAGATAATACATGAAGGTGCATATCAAAGAGTCTCACATGCTCTGCTGG|ACCCTGCGGATCAACGTGTGTTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCCCAGGCCTTTCCGTGCTTCCTGTGGCTGGGCTTGTGTCCCCACCACATCTACGGACTGCCCACAGGAGAGTACCCAGGGCTGATGAAG___GTCAGCTATCACCACGGCAACCACGCAGACCCTGAGGAGCGGGACTGCCCCACAGCtCGCACAGACATCGGAGACGTCCAGATCCTGAGCAGCTTTGTCAGAGATCACTTACCTGATCTGAAGCCCGAGCCTGCTGTCATTGAGAGCTGCATGTACACG___AAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1288 chr17:16282014-16282088:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1978 ORC2::ATRNL1 ENSG00000115942.9::ENSG00000107518.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ORC2 ENSG00000115942.9 protein_coding - - chr2:200908977-200963680:- chr2:200931339:- chr2:201773700-201828403:- chr2:201796062:- ATRNL1 ENSG00000107518.18 protein_coding + - chr10:115093365-115948999:+ chr10:115831061:- chr10:116853124-117708510:+ chr10:117590572:- chr2:200929221,chr2:200929231 chr10:115831640,chr10:115831647 NA NA chr2:201793944,chr2:201793954 chr10:117591151,chr10:117591158 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Origin_recognition_complex_subunit_2_(16%)| ORC2(11%)| 6 4 9 136 11 ENST00000234296.7 unknown upstream downstream duplicates(3) CAAAAACACCACAAAAAAGTGTTTCATTCAGTTTGAAGAATGATCCTGAGATTACGATAAACGTTCCTCAAAGTAGCAAGG___GCCATTCTGCTTCAGACAAG...CAGGAACATGAAGAGGACACTAATGCAGTCATATTCAGCCAAAAGATTCAAGCTCAGAATAGAGTAGTTTCAGCTCCTGTTGGCAAAGAAACACCTTCTAAGAGAATGAAAAGAGATAAAACA___AGTGACTTAGTAGAAGAATATTTTGAAGCTCACAGCAGTTCAAAAGTTTTAACCTCTGATAGAACACTGCAGAAGCTAAAGAGAGCTAAACTGGATCAG___CAAACTTTGCGTAACTTATTGAGCAAGGTTTCCCCTTCCTTTTCTGCCGAACTTAAACAACTAAATCAACAGTATGAAAAATTATTTCATAAATGGATGCTGCAATTACA|AAAACGTGGAAAAATCTATGAAGAATGTGGGACAGGAAAGGGAGCAGAATACAAGAGAATGTATGTGGCTAAGGACTGGTGCTCACAGCCAAGGGATAAAAAGGCAAGGCCTGCTCTGTGTTGTAAAGCTGTAAAACTTTC...TATGAATTGGAGGAAAGTCACTCAGGCACTGAGGACTGATGGACAGAAATTAGCTGACATCAGAGAGGCCAATAAGTTATCTTAGCACAACTGGCCAAAGGCACATAGTTTTCCATGGGAAATGACCGCTG QEHEEDTNAVIFSQKIQAQNRVVSAPVGKETPSKRMKRDKTSDLVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEKLFHKWMLQLq|krgkiyeecgtgkgaeykrmyvakdwcsqprdkkarpalcckavkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1981 ZCCHC7::FAM219A ENSG00000147905.18::ENSG00000164970.15 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 180 TRUE 318 TRUE 123 ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37126942:+ chr9:37120571-37358146:+ chr9:37126939:+ FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34405964:- chr9:34398182-34458568:- chr9:34405962:- chr9:37271426,chr9:37271423,chr9:37271822 chr9:34422572,chr9:34422575,chr9:34422932 NA NA chr9:37271423,chr9:37271420,chr9:37271819 chr9:34422570,chr9:34422573,chr9:34422930 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Protein_family_FAM219A(100%) |FAM219A(100%) 3 8 6 250 117 ENST00000336755.10 ENST00000651358.1 downstream downstream duplicates(4),mismatches(2) TGAGAAGCCTAAATCTGAAGAGAGATCAGGTGTAATCCGAGAGGTCATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGATGTGAAGTAGATGATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAAAACTCTGTTACTGAAG|GACCCAGCCGCCGCCTCCATCTCTGACGGAGACTGTGACGCCCGGGAGGGTGAGTCAGTAGCCATGAATTACAAACCATCCCCGCTCCAAGTGAAGCTGGG...___AGAAGCAGCGGGAGCTGGCCCGGAAGGGCTCCCTGAAGAATGGCA EKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTE|gpsrrlhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1982 ZCCHC7::FAM219A ENSG00000147905.18::ENSG00000164970.15 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 318 TRUE 123 ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37147445:+ chr9:37120571-37358146:+ chr9:37147442:+ FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34405964:- chr9:34398182-34458568:- chr9:34405962:- chr9:37271426,chr9:37271423,chr9:37271822 chr9:34422572,chr9:34422575,chr9:34422932 NA NA chr9:37271423,chr9:37271420,chr9:37271819 chr9:34422570,chr9:34422573,chr9:34422930 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Protein_family_FAM219A(100%) |FAM219A(100%) 1 0 7 12 117 ENST00000336755.10 ENST00000651358.1 downstream downstream duplicates(1) GCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGATGTGAAGTAGATGATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAA...GCTGTTTTGAAAGTGTCTAATATTGGCTGATGTAGAGCTATAG|GACCCAGCCGCCGCCTCCATCTCTGACGGAGACTGTGACGCCCGGGAGGGTGAGTCAGTAGCCATGAATTACAAACCATCCCCGCTCCAAGTGAAGCTGGGTGAGTGTGTCTGGGGGGTGAGGGAGATGTGGGGAGTAGGCAAGATACTCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1983 ZCCHC7::FAM219A ENSG00000147905.18::ENSG00000164970.15 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 318 TRUE 123 ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37120623:+ chr9:37120571-37358146:+ chr9:37120620:+ FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34405964:- chr9:34398182-34458568:- chr9:34405962:- chr9:37271426,chr9:37271423,chr9:37271822 chr9:34422572,chr9:34422575,chr9:34422932 NA NA chr9:37271423,chr9:37271420,chr9:37271819 chr9:34422570,chr9:34422573,chr9:34422930 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Protein_family_FAM219A(100%) |FAM219A(100%) 2 1 1 272 117 ENST00000336755.10 ENST00000651358.1 downstream downstream none CCCGGGTCTGCGCGGACGCGGCCTCCTTACCTCATTTGTCCTCGCCCCTCCCCGTCCCTCTACGCGTTTTGGTTCCCGGTTGGTGCTTCCTGTTCGCAGCTGCGGCA|GACCCAGCCGCCGCCTCCATCTCTGACGGAGACTGTGACGCCCGGGAGGGTGAGTCAGTAGCCATGAATTAC...AGGCTACTCCTCACTTGACCAGAGCCCTGATGAGAAGCCACTGGTAGCCCTTGACACGGACAG___CGATGATGACTTTGACATGTCTAGATACTCCTCCTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1984 ZFAS1::FLJ40194 ENSG00000177410.13::ENSG00000177369.11 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAS1 ENSG00000177410.13 lncRNA + + chr20:49278178-49299600:+ chr20:49280964:+ chr20:47894715-47916137:+ chr20:47897501:+ FLJ40194 ENSG00000177369.11 lncRNA + - chr17:49230853-49318011:+ chr17:49235008:- chr17:47308215-47395373:+ chr17:47312370:- chr20:49287128,chr20:49287127 chr17:49257367,chr17:49257368 NA NA chr20:47903665,chr20:47903664 chr17:47334729,chr17:47334730 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 10 4 3 558 83 ENST00000620594.2 unknown downstream downstream duplicates(1) AGTTGCAGTCAGGCTTCATACGCTATTGTCCTGCCC___GTTAGAGCAGCCAGCGGGTACAGAATGGATTTTGGAAGAGGGAGTCACCACTGGACCTCCAAGGAAGCCACGTGCAGACATCTACAACCTTCGATCTCCTGACGA___GTTTATTGTTGGCCAAAACCAGGCTTTGATTGAACCAGGATGAATGCGGGTGTTGGAAGTAGAATATATATATACATATAAAATcG___GTTGGGAGCCACGTGTACCAGTGTGTGTTGATCTTGGCTTGATTCAGTCTGCCTTGTAACAG|GTGGAGTGTGCGGGTTGAACTCATGCCCATCTGCCCCTCCCTCCCACCTTTGCATCTCCCACCACCAGGAAGGAGGCCAGCTGGAGAGCACGAGGCCACATTCTTGGACTCTTGGCCTCTTTGGCTCTAACACTGAAAC...TGGGtAAGTGACACACCCTCTTTTGAAGACCAGGTGGATTGAGCTGTCCCTGGCAGCCTGAGTCAGGGTTCACCAGGAACTCAAGTGAGCCCTATTGAAACCACCTTTGCAAAAATCATAACTGAGAAAATTATGATAGTAAAAGATATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1985 ENSG00000286001::SUCLA2 ENSG00000286001.1::ENSG00000136143.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 319 TRUE 124 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:264385:+ chr5:218413-315070:+ chr5:264500:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47956878:- chr13:48319871-48612104:- chr13:48531013:- chr5:265472,chr5:265471 chr13:47959271,chr13:47959272 NA NA chr5:265587,chr5:265586 chr13:48533406,chr13:48533407 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none |CoA-ligase(100%) FAD_binding_2(100%),Succ_DH_flav_C(100%)|ATP-grasp_5(5%),Ligase_CoA(100%) 4 3 9 42 37 ENST00000651543.1 ENST00000634878.2 downstream downstream mismatches(3) CAGGATCGGTGCAGTAGTACAATCACAGCTCACTGCAGCCTCAAACTCCTGGGCAGCTCAGGTGATCTTCCTGACTCAGCCTTCTGAGTAGTTGGGGCTAC...GCAGGTTTGACATCATGCTTTGTTTATGAAGCTGTGGGATACAAGGACTCTCATACGTCACTGTGGAATGCAGAACATTGCAACCTCATGGAAGAGGATTTGGCAGCATCTAACAAAA___GTGCCAACCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGCAGCTGAAGGGAAGtGGGAG|ATGAAGATTTACCAACATTGGCACTATTGACATTTTAGG___TATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACTGGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTCGATGGAAATATAGGCTGCCTAG___TAAATGGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1986 ENSG00000286001::SUCLA2 ENSG00000286001.1::ENSG00000136143.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 319 TRUE 124 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:263814:+ chr5:218413-315070:+ chr5:263929:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47956878:- chr13:48319871-48612104:- chr13:48531013:- chr5:265472,chr5:265471 chr13:47959271,chr13:47959272 NA NA chr5:265587,chr5:265586 chr13:48533406,chr13:48533407 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none |CoA-ligase(100%) FAD_binding_2(100%),Succ_DH_flav_C(100%)|ATP-grasp_5(5%),Ligase_CoA(100%) 1 3 5 62 37 ENST00000651543.1 ENST00000634878.2 downstream downstream mismatches(2) CTGGGAAG___GTCACTCTGGAATATAGACCCGTaATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCaTCCCGCCAGCCATTCGCTCCTACTGATGAGAC...TTGTGGGTAGAGTGTGTTCATTATCTTCTGTGCATTACACCATAAAAAAGCTGGTCATAAAAATGCGAACCAAAAACAAAGGTGAAACTAGGATAAAATTTCTCACCTGTGTGATTGGTAAATGTGCAGGTTTGACATCATGCTTTGTTTATGAAGCTGTGGGATACAAGGACTCTCATACGTCACTGTGGAATGCAGAACATTGCAACCTCATGGAAGAGGATTTGGCAGCATCTAACAAAA|ATGAAGATTTACCAACATTGGCACTATTGACATTTTAGG___TATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACTGGACCCAGGAAGATGAAAGGGACAAAGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1987 ENSG00000286001::SUCLA2 ENSG00000286001.1::ENSG00000136143.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 319 TRUE 124 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:264385:+ chr5:218413-315070:+ chr5:264500:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47954557:- chr13:48319871-48612104:- chr13:48528692:- chr5:265472,chr5:265471 chr13:47959271,chr13:47959272 NA NA chr5:265587,chr5:265586 chr13:48533406,chr13:48533407 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none |CoA-ligase(100%) FAD_binding_2(100%),Succ_DH_flav_C(100%)|ATP-grasp_5(0%),Ligase_CoA(100%) 0 1 5 42 426 ENST00000651543.1 ENST00000643584.1 downstream downstream mismatches(2) CAAGGACTCTCATACGTCACTGTGGAATGCAGAACATTGCAACCTCATGGAAGAGGATTTGGCAGCATCTAACAAAA___GTGCCAACCCTGAGACCAAAATTTGGAAGGTGGCCCTGAGCAGCAGCTGAAGGGAAGtGGGAG|TATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACTGGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTGGCCTCGATGGAAATATAGGCTGCCTAG___TAAATGGTGCTGGTTTGGCTATGGCCACAATGGATATAATAAAACTTCATGGAGGGACTCCAGCCAACTTCCTTGATGTTGGTGGTGGTGCTACAGTCCATCAAGTAACAGAAGCATTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1988 ENSG00000286001::SUCLA2 ENSG00000286001.1::ENSG00000136143.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 319 TRUE 124 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:263814:+ chr5:218413-315070:+ chr5:263929:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47954557:- chr13:48319871-48612104:- chr13:48528692:- chr5:265472,chr5:265471 chr13:47959271,chr13:47959272 NA NA chr5:265587,chr5:265586 chr13:48533406,chr13:48533407 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none |CoA-ligase(100%) FAD_binding_2(100%),Succ_DH_flav_C(100%)|ATP-grasp_5(0%),Ligase_CoA(100%) 0 1 3 62 426 ENST00000651543.1 ENST00000643584.1 downstream downstream mismatches(2) GCAGGTTTGACATC?TGCTTTGTTTATGAAGCTGTGGGATACAAGGACTCTCATACGTCACTGTGGAATGCAGAACATTGCAACCTCATGGAAGAGGATTTGGCAGCATCTAACAAAA|TATTGTGTATGGATGCAAAGATCAATTTTGACTCTAATTCAGCCTATCGCCAAAAGAAAATCTTTGATCTACAGGACTGGACCCAGGAAGATGAAAGGGACAAAGATGCTGCTAAGGCAAATCTCAACTACATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1989 ENSG00000286001::SUCLA2 ENSG00000286001.1::ENSG00000136143.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 319 TRUE 124 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:256455:+ chr5:218413-315070:+ chr5:256570:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47956878:- chr13:48319871-48612104:- chr13:48531013:- chr5:265472,chr5:265471 chr13:47959271,chr13:47959272 NA NA chr5:265587,chr5:265586 chr13:48533406,chr13:48533407 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation medium none |CoA-ligase(100%) FAD_binding_2(100%),Succ_DH_flav_C(100%)|ATP-grasp_5(5%),Ligase_CoA(100%) 0 1 2 1256 37 ENST00000651543.1 ENST00000634878.2 downstream downstream none GGAATATAGACCCGTaATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCaTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTT|ATGAAGATTTACCAACATTGGCACTATTGACAgTTTAGG...CACAGtGTATAGTCATGGCAGTAAAAGACTTGGAAATTAAAATACCTGTTGTGGTACGGTTACAAG___GTACACGAGTCGATGATGCTAAGGCACTGATAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1994 CTTN::CTSC ENSG00000085733.16::ENSG00000109861.17 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTTN ENSG00000085733.16 protein_coding + + chr11:70398404-70436584:+ chr11:70405361:+ chr11:70244510-70282690:+ chr11:70251467:+ CTSC ENSG00000109861.17 protein_coding - + chr11:88265069-88359684:- chr11:88297680:+ chr11:87998237-88092852:- chr11:88030848:+ chr11:70405870,chr11:70405870,chr11:70405870 chr11:88274092,chr11:88274082,chr11:88274073 NA NA chr11:70251976,chr11:70251976,chr11:70251976 chr11:88007260,chr11:88007250,chr11:88007241 NA NA sense antisense unknown 5'UTR/splice-site exon deletion/5'-5' high none none none 3 3 6 695 26 ENST00000346329.7 unknown downstream upstream duplicates(3),mismatches(1) GCGGGGTCGCGCGGGGACCCGGATGCGGCCCCGCCCCCGCCCTCGGAACCGGAAGTAGAGCCTGGcGCCTGGGAGCGGCTGGCGCGGCGGAATCCAGGGCCGACCCGGGCCGGACCGACCCCAGGCGGCG___ACGGAATCAGTCCCCAATGCCTGGAAATTCCTCATTGGATTACTGTGTTTTAAACAGAATTTCGTGAACAGCCTTTTATCTCCAAGCGGAAAGAAAG|AGCAATCACAGGAACAAGGGAAGAAGATAAACTTCATCAAGCCCCTGACCTGTAAGAATGTGTCAGCTACCAAG___CAACCCCACTCCTATGGCCCCACCTAGAAGCAATTCAGCCCACAGGAGGACAGCTTCAACTCCCTGTGATTTCACCCACCCCAACCAATCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 1996 MAP2K6::TNRC6C ENSG00000108984.16::ENSG00000078687.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 181 FALSE NA FALSE NA MAP2K6 ENSG00000108984.16 protein_coding + + chr17:69414697-69553865:+ chr17:69415000:+ chr17:67410838-67550006:+ chr17:67411141:+ TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:78075136:+ chr17:75954785-76104903:+ chr17:76071217:+ chr17:69458975,chr17:69458982 chr17:78073988,chr17:78073985 NA NA chr17:67455116,chr17:67455123 chr17:76070069,chr17:76070066 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |M_domain_of_GW182(100%),TNRC6-PABC_binding_domain(100%),UBA/TS-N_domain(2%) |M_domain(100%),TNRC6-PABC_bdg(100%),UBA(0%) 1 2 7 17 63 ENST00000590474.7 ENST00000696270.1 downstream upstream duplicates(1) CCATCATGTAGCTGCAGCACAGCCTTCCCTAACGTTGCAACTGGGGGAAAAATCACTTTCCAGTCTGTTTTGCAAGGTGTGCATTTCCATCTTGATTCCCTGAAAGTCCATCTGCTGCATCGGTCAAGAGAAACTCCACTTGCATGAAGATTGCACGCCTGCAGCTTGCATCTTTGTTGCAAAACTAGCTACAGAAGAGAAGCAAGGCAAAGTCTTTTGTGCTCCCCTCCCCCATCAAAGGAAAGGGGAAAATGTCTCAGTCGAAAG|GCGCTCTGCTGGAAAAGAAGGTGGACGTGGACAAGCGTGGGCTGGGAGTGACCGACCATAATGGAATGGCCGCCAAGCCCCTCGGCTGCCGCCCGCCAATCTCCAAAGAGTCTTCCGTGGACCGCCCCACCTTTCTTGACAAG___GATGGCGGCCTCGTGGAAGAGCCCACGCCTTCACCGTTCTTGCCTTCCCCgAG...TCAGGCCCTGGGTGGGATTGCCTCCGGGCTGGGCATGCAAAACTTGAATTCTTCTAGACAG___ATACCGgGTGGCAATCTGGGTATGTTTGGCAATAGTGGAG MSQSK|gALLEKKVDVDKRGLGVTDHNGMAAKPLGCRPPISKESSVDRPTFLDKDGGLVEEPTPSPFLPSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Dual specificity mitogen-activated protein kinase kinase 6 STE STE7 P52564 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2005 WDFY3::LINC02994 ENSG00000163625.17::ENSG00000250546.6 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDFY3 ENSG00000163625.17 protein_coding - - chr4:84668765-84966690:- chr4:84932270:- chr4:85589918-85887843:- chr4:85853423:- LINC02994 ENSG00000250546.6 lncRNA - - chr4:83796436-84299189:- chr4:84012119:- chr4:84717589-85220342:- chr4:84933272:- chr4:84917103,chr4:84917110 chr4:84027572,chr4:84027576 NA NA chr4:85838256,chr4:85838263 chr4:84948725,chr4:84948729 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 1 3 1 19 26 ENST00000295888.9 ENST00000508406.1 upstream downstream duplicates(2),mismatches(1),multimappers(1) CTCGGCGCGcAGCCCCGGCCCGCCGCGGTCCCGTCTCCTGGGCCTGTCCCGCCCGCGCCCTCCGCCGGCCCTCAG___GTATAATACTTCTCCACGTCTGCTTCAGGAAGAAAGTGCCTGCCATTCTTATCATTTCTAAGCAGGTTCATGCCAGCCCAGAACAGAGAATCAG|AGATTATAAGCAATTTCTCCATGGCTGGAATTCAGTTGATCTGGGACTGAACCTATTTCTAATGG___GGTCTTGATATATTGCCCAGGCTGGAGTGCAGGGGCTATTCACAGGCACAATCATAGCTCACTACAGTCTCAAACTCCTAATCTCAAGCAGTAGCTGGGACTGTAAGTATGCACCAACtCTCCCGGTTTGGGTATCTCCATTGATTGGCAACCAGCACCACAGTAGATGCTGATGAAAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2006 USP33::ENSG00000225605 ENSG00000077254.14::ENSG00000225605.3 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 321 TRUE 125 USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77714614:- chr1:78161672-78225537:- chr1:78180299:- ENSG00000225605 ENSG00000225605.3 lncRNA + + chr1:75926454-76019356:+ chr1:75934434:+ chr1:76392139-76485041:+ chr1:76400119:+ chr1:77714521,chr1:77714529 chr1:75932303,chr1:75932295 NA NA chr1:78180206,chr1:78180214 chr1:76397988,chr1:76397980 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(21%),Ubiquitin_carboxyl-terminal_hydrolase(100%),Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| DUSP(1%),UCH(100%),UCH_1(100%),zf-UBP(100%)| 0 1 4 90 19 ENST00000370794.7 ENST00000668000.1 upstream upstream duplicates(1),mismappers(1),mismatches(2) CAAAAAGAGAGGAGAAGGATATCAAATTTATTGAACATAATGGAACCAAGCCTCCTTCAGTTTTATATTTCTCGACAGTGGCTTAATAAATTTAAGACCTTTGCCGAACCTGGCCCTATTTCAAATAATGACTTTCTTTGTATTCATGGAG|ATAAGGAAGCTGAGATGTAGAGCTGAAGTGTCTTGCCCAAGATCATTTGTCTAGTAAGTGATAAAGCTGGAATTTGAACCCAAAGAGAATAGGGCTAGAGGCTTTCTCTCTACTCTCCCCTGGTTCTCCAAAGTGAGCTACCTTTCCATTTCTATGGCTAG...___CCTATGACCTGGCTCAACCCAGCTACAA...CACTAGACAACTGAGGTAGTCACCTACCTAAGGAGAGATGCCAAGGACAAGTTGGCCAGCTAAgCACTTTCTCCAGAAATGGcATTTATAGGcAA QKERRRISNLLNIMEPSLLQFYISRQWLNKFKTFAEPGPISNNDFLCIHG|dkeaem* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2007 USP33::ENSG00000225605 ENSG00000077254.14::ENSG00000225605.3 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 321 TRUE 125 USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77717867:- chr1:78161672-78225537:- chr1:78183552:- ENSG00000225605 ENSG00000225605.3 lncRNA + + chr1:75926454-76019356:+ chr1:75934434:+ chr1:76392139-76485041:+ chr1:76400119:+ chr1:77714521,chr1:77714529 chr1:75932303,chr1:75932295 NA NA chr1:78180206,chr1:78180214 chr1:76397988,chr1:76397980 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ubiquitin_carboxyl-terminal_hydrolase(92%),Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| UCH(88%),UCH_1(88%),zf-UBP(100%)| 2 1 1 136 19 ENST00000370794.7 ENST00000668000.1 upstream upstream mismappers(1),mismatches(1) GCAAGATTGTCTTGCTGCCTTCTTTGCCAGAGATGAACTAAAAG___GTGACAATATGTACAGTTGTGAAAAATGCAAAAA___GTTGAGAAATGGAGTGAAGTTTTGTAAAGTACAAAACTTTCCTGAG___ATTTTGTGCATCCACCTTAAAAGATTCAGACATGAACTAATGTTTTCCACCAAAATCAGTACCCATGTTTCATTTCCGCTAGAAGGCTTGGATCTTCAGCCATTTCTTGCTAAGGATAGTCCAGCT...CTTCTGTCAGTCATTTGCCATCATGGAACTGCAAGTA|ATAAGGAAGCTGAGATGTAGAGCTGAAGTGTCTTGCCCAAGATCATTTGTCTAGTAAGTGATAAAGCTGGAATTTGAACCCAAAGAGAATAGGGCTAGAGGCTTTCTCTCTACTCTCCCCTGGTTCTCC?AAGTGAGCTACCTTTCCATTTCT?...___CCTATGACCTGGCTCAACCCAGCTACAAGTTG LLSVICHHGTAS|nkeaem* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2008 USP33::ENSG00000225605 ENSG00000077254.14::ENSG00000225605.3 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 321 TRUE 125 USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77715742:- chr1:78161672-78225537:- chr1:78181427:- ENSG00000225605 ENSG00000225605.3 lncRNA + + chr1:75926454-76019356:+ chr1:75934434:+ chr1:76392139-76485041:+ chr1:76400119:+ chr1:77714521,chr1:77714529 chr1:75932303,chr1:75932295 NA NA chr1:78180206,chr1:78180214 chr1:76397988,chr1:76397980 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Ubiquitin_carboxyl-terminal_hydrolase(100%),Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| UCH(100%),UCH_1(100%),zf-UBP(100%)| 0 1 1 98 19 ENST00000370794.7 ENST00000663316.1 upstream upstream mismatches(2) CTCAAATTGTGACATATGATCTTaTGTaAGTCATTTGCCATCATGGAACTGCAAGaA___GTGGACACTATATAGCCTACTGCCaAAAaAATCTAAATgATCTC...AAGTTTCAGAATCTACTGTACAAAATGCAGAAGCTTACGTTCTTTTCTATAG|ATAAGGAAGCTGAGATGTAGAGCTGAAGTGTCTTGCCCAAGATCATTTGTCTAGTAAGTGATAAAGCTGGAATTTGAACCCAAAGAGAATAGGGCTAGAGGCTTTCTCTCTACTCTCCCCTGGTTCTCCAAAGTGAGCTACCTTTCCATTTCTATGGCTAGTTTATGAAATACAGTCATGAAAC...AATAATAACTACAACATAGTAAGTCAAAGCTGTTGCTGCATTAGTTCTTTAAAATTTTTAAAACATTGGCCGGGCACAGTGGCTCACGCCTGTAATCCTAG VSESTVQNAEAYVLFYr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2011 THRAP3::HCG20 ENSG00000054118.15::ENSG00000228022.6 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 322 TRUE 126 THRAP3 ENSG00000054118.15 protein_coding + + chr1:36224432-36305357:+ chr1:36225463:+ chr1:36690033-36770958:+ chr1:36691064:+ HCG20 ENSG00000228022.6 lncRNA + + chr6:30743790-30792250:+ chr6:30788691:+ chr6:30711567-30760027:+ chr6:30756468:+ chr1:36249312,chr1:36249310 chr6:30744810,chr6:30744805 NA NA chr1:36714913,chr1:36714911 chr6:30712587,chr6:30712582 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 2 2 36 135 ENST00000648638.1 ENST00000656751.1 downstream upstream none GTTGCGAGCTGCAGCTGCGATCTCTGTGGTAGGCCCAG___GTCAAGAGTCTTCATCTCCAGCTGCCTCAGTTTTCTTATCACTAAAACAGCA|AGTTGGATGCTGAAACTTGCAGTCACACAAGGACTTGAACCTAGAGCTTTTCTAAAGCCCGTACTCTTTCCAGTACCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE thyroid hormone receptor associated protein 3 (TRAP150) 2 aneurysmal bone cyst mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 2012 THRAP3::HCG20 ENSG00000054118.15::ENSG00000228022.6 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 322 TRUE 126 THRAP3 ENSG00000054118.15 protein_coding + + chr1:36224432-36305357:+ chr1:36224505:+ chr1:36690033-36770958:+ chr1:36690106:+ HCG20 ENSG00000228022.6 lncRNA + + chr6:30743790-30792250:+ chr6:30788691:+ chr6:30711567-30760027:+ chr6:30756468:+ chr1:36249312,chr1:36249310 chr6:30744810,chr6:30744805 NA NA chr1:36714913,chr1:36714911 chr6:30712587,chr6:30712582 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 19 0 499 135 ENST00000648638.1 ENST00000656751.1 downstream upstream duplicates(6),mismatches(8) GGGGCGAGGTTCGGGCTGGTTGTTCCGTTGCGAGCTGCAGCTGCGATCTCTGTGGTAGGCCCAG|AGTTGGATGCTGAAACTTGCAGTCACACAAGGACTTGAACCTAGAGCTTTTCTAAAGCCCGTACTCTTTCCAGTACCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCCTCTCTCTCTTCACTTCCATGTGATCTGTTACTCATTTTGTCAAGACATCCTGGGTCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE thyroid hormone receptor associated protein 3 (TRAP150) 2 aneurysmal bone cyst mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 2013 THRAP3::HCG20 ENSG00000054118.15::ENSG00000228022.6 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 322 TRUE 126 THRAP3 ENSG00000054118.15 protein_coding + + chr1:36224432-36305357:+ chr1:36225102:+ chr1:36690033-36770958:+ chr1:36690703:+ HCG20 ENSG00000228022.6 lncRNA + + chr6:30743790-30792250:+ chr6:30788691:+ chr6:30711567-30760027:+ chr6:30756468:+ chr1:36249312,chr1:36249310 chr6:30744810,chr6:30744805 NA NA chr1:36714913,chr1:36714911 chr6:30712587,chr6:30712582 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 1 0 1 32 135 ENST00000469141.6 ENST00000656751.1 downstream upstream none CTGGTGGCCAAAAACGGGATAGTCCAAATTTGTCTCCTACGGGAATATTAGAGTTCTCACTTTTTTCTTGGGCTGGAGCTGAGGCCGGCTTGCATTCCAGTGGCAATCGGCGTGAGTTCTGCTTATATGAG|AGTTGGATGCTGAAACTTGCAGTCACACAAGGACTTGAACCTAGAGCTTTTCTAAAGCCCGTACTCTTTCCAGTACCCTGAGCCAGGGGAGCCAGCGGGCAGAAATGACGTGTGAGGTACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE thyroid hormone receptor associated protein 3 (TRAP150) 2 aneurysmal bone cyst mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 2015 ZNF580::KASH5 ENSG00000213015.9::ENSG00000161609.10 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF580 ENSG00000213015.9 protein_coding + - chr19:55635016-55643470:+ chr19:55636561:- chr19:56146382-56154836:+ chr19:56147927:- KASH5 ENSG00000161609.10 protein_coding + + chr19:49388219-49417990:+ chr19:49399025:+ chr19:49891476-49921247:+ chr19:49902282:+ chr19:55636537,chr19:55636541 chr19:49398431,chr19:49398427 NA NA chr19:56147903,chr19:56147907 chr19:49901688,chr19:49901684 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |Coiled-coil_region_of_CCDC155_or_KASH(72%) |KASH_CCD(90%) 1 1 1 89 6 unknown ENST00000447857.8 upstream upstream none CCACCCAGCAAATGGGGAGGCCGAGGCCCGGAGAAGGCCAGACGCTGCCAGATAGTTGGGGAAG___CACAATCCATGATATGGCCTCGTTGATCTACTGCCTGCTGTGTTACTGCCTGCCTTCCCCACTCTCCAAGGCCCAGCTCCATCCTGGTCAACATTCTACCCTCAGAATCTATCAAAGGTCTTTCAGGAAAgG|CACCCAGCAGGCCCTGCAGTTTGCCAAGGCCATGGATGAGGAGCTGGAGGACCTGAAGACTCTGGCCAGGAGCCTGGAGGAACAGAATCGCAGCCTTCTGGCCCAAGCCCGGCAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2016 ENSG00000237356::NID2 ENSG00000237356.7::ENSG00000087303.19 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 323 TRUE 127 ENSG00000237356 ENSG00000237356.7 lncRNA + + chr14:53169010-53883740:+ chr14:53318138:+ chr14:53635728-54350458:+ chr14:53784856:+ NID2 ENSG00000087303.19 protein_coding - - chr14:52004809-52069059:- chr14:52042931:- chr14:52471527-52535777:- chr14:52509649:- chr14:53339840,chr14:53339841 chr14:52046443,chr14:52046442 NA NA chr14:53806558,chr14:53806559 chr14:52513161,chr14:52513160 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),EGF_domain(100%),G2F_domain(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Thyroglobulin_type-1_repeat(100%) |EGF_3(100%),EGF_CA(100%),G2F(100%),Ldl_recept_b(100%),Thyroglobulin_1(100%),cEGF(100%),hEGF(100%) 0 1 1 12 6 ENST00000663444.1 ENST00000216286.10 downstream downstream mismatches(1) CACCTCTCAATACAT___AAAACTACTGGAGGGTGGTTCCAAGATGGCCAAATAGGAACAGCTCCAGTCTACAGCTCCCAGCATGAGTGATGCAGAAGACGAATGATTTCTGCATTTCCAACTgAG|TCTTCACGTATAATGCTGCCAACAAGGAAAC...CCTTCTGCACGGACTATGCCACTGGCTTCTGCTGCCACTGCCAATCCAAGTTTTATGGAAATGGGAAGCACTGTCTGCCTGAAG___GGGCACCTCACCGAGTGAATGGGAAAGTGAGTGGCCACCTCCACGTGG...TTCACTGATGTGGtCCTGCATGCGTgTATCGgGGGCAATGATGGCAGAGCCTAagCGGCCATCAGCCACATCCCACAGCCAGCAGCCCAGGCCCTCCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2017 ENSG00000237356::NID2 ENSG00000237356.7::ENSG00000087303.19 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 323 TRUE 127 ENSG00000237356 ENSG00000237356.7 lncRNA + + chr14:53169010-53883740:+ chr14:53218055:+ chr14:53635728-54350458:+ chr14:53684773:+ NID2 ENSG00000087303.19 protein_coding - - chr14:52004809-52069059:- chr14:52042931:- chr14:52471527-52535777:- chr14:52509649:- chr14:53339840,chr14:53339841 chr14:52046443,chr14:52046442 NA NA chr14:53806558,chr14:53806559 chr14:52513161,chr14:52513160 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),EGF_domain(100%),G2F_domain(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Thyroglobulin_type-1_repeat(100%) |EGF_3(100%),EGF_CA(100%),G2F(100%),Ldl_recept_b(100%),Thyroglobulin_1(100%),cEGF(100%),hEGF(100%) 0 1 0 26 6 ENST00000648066.1 ENST00000216286.10 downstream downstream none GCCAGAGTGGACGCCAAGGCTGAGGAGGCGCCGAGAGCCAGTGAGGGCTGCTAGCATGTTGTCACCTCTCAATACAT|TCTTCACGTATAATGCTGCCAACA...AGACGGTTCGTATCACTCAAACTGCTGAGGGACTTGACCCAGAGAACTACCTGAGCATTAAGACCAACATTCAAGGCCAGGTGCCTTACGTCcCAGCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2018 ENSG00000237356::NID2 ENSG00000237356.7::ENSG00000087303.19 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 323 TRUE 127 ENSG00000237356 ENSG00000237356.7 lncRNA + + chr14:53169010-53883740:+ chr14:53313790:+ chr14:53635728-54350458:+ chr14:53780508:+ NID2 ENSG00000087303.19 protein_coding - - chr14:52004809-52069059:- chr14:52042931:- chr14:52471527-52535777:- chr14:52509649:- chr14:53339840,chr14:53339841 chr14:52046443,chr14:52046442 NA NA chr14:53806558,chr14:53806559 chr14:52513161,chr14:52513160 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),EGF_domain(100%),G2F_domain(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Thyroglobulin_type-1_repeat(100%) |EGF_3(100%),EGF_CA(100%),G2F(100%),Ldl_recept_b(100%),Thyroglobulin_1(100%),cEGF(100%),hEGF(100%) 1 0 0 12 6 ENST00000663444.1 ENST00000216286.10 downstream downstream none CTCGGAGCCTGCGCCCACCCGGAACTAGCCGCGTTCAGCCCTGGTTCCCGCCCCCGCCTCTCCCGCCACACCTCTCCACAAGCAGAGGGAGCTGGCTTCAG...CGCTCTTGTTGCCCAGGCTGGAATGCAATGGCGTGATCTCGGCTCACCGCAACCTCTGCgTCCCAG|TCTTCACGTATAATGCTGCCAACAAGGAAACCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2019 DCAF17::VLDLR-AS1 ENSG00000115827.14::ENSG00000236404.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 324 FALSE NA DCAF17 ENSG00000115827.14 protein_coding + + chr2:171434217-171485052:+ chr2:171435186:+ chr2:172290727-172341562:+ chr2:172291696:+ VLDLR-AS1 ENSG00000236404.12 lncRNA - - chr9:2421597-2622457:- chr9:2425540:- chr9:2421597-2622457:- chr9:2425540:- chr2:171444337,chr2:171444337,chr2:171444338 chr9:2444141,chr9:2444137,chr9:2444140 NA NA chr2:172300847,chr2:172300847,chr2:172300848 chr9:2444141,chr9:2444137,chr9:2444140 NA NA sense sense unknown CDS/splice-site exon/splice-site translocation high none DDB1-_and_CUL4-associated_factor_17(9%)| DCAF17(1%)| 1 0 1 30 2 ENST00000468592.5 ENST00000671040.1 downstream downstream none GCCGGGCTGCCTCACGAGGCACTAGGAACTACATTTCCCG___GAAAGTACTAAATTTAAGAATGTCTGGACAACTCATTCCAGGTCACCTATAGCCTATGAGAGAGGAAGAATATATTTTGACAATTATCGGCGCTGTGTCAGCAG|GTAGGAAAGAGACAAATGGAAGCAAAATAGCAAAATGGTGAAGAG...CTCAGCCTGTGGATTATAATGAAACgTGCCT___GTTATAGGATCCAGTTTTTTAGGTGGTAGCAACATGCTCAAGGAAGATGCAGCCCCTTCCTCCAGCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2029 FAS::WBP1L ENSG00000026103.25::ENSG00000166272.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAS ENSG00000026103.25 protein_coding + + chr10:88953813-89029605:+ chr10:89017817:+ chr10:90713570-90789362:+ chr10:90777574:+ WBP1L ENSG00000166272.18 protein_coding + - chr10:102743948-102834516:+ chr10:102806202:- chr10:104503705-104594273:+ chr10:104565959:- chr10:89017945,chr10:89017946,chr10:89017946 chr10:102809317,chr10:102809320,chr10:102809615 NA NA chr10:90777702,chr10:90777703,chr10:90777703 chr10:104569074,chr10:104569077,chr10:104569372 NA NA sense antisense unknown 3'UTR intron inversion/3'-3' medium none Death_domain(100%),TNFR/NGFR_cysteine-rich_region(100%)| Death(100%),TNFR_c6(100%)| 5 2 7 120 108 ENST00000690268.1 unknown downstream downstream duplicates(3),mismatches(1),multimappers(1) AGTGCAGACAGACTTTATTAGTACAGCAGAGGTGCCCACAGAGCAGGCAGAAGGGATCAGTGCCTGGATCTGTCCCTTCCTCCTTCTGCCCTCGCTGAGCCCTAGTGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCCGCGGACCCTCACG|GGTCTCATTCTGTCGCTTAGGCTGGAGTGGCAAGGGAACTCAGCTCACTGCAACCTCCGCCTCCCAGGCTCACGTGATTCTTGTGCCTCAGCCTCCTCAGCAGCTGCAACTACAG___GACGGTGGGTGACTGGCTCCCCTGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fas cell surface death receptor 1 Yes TGCT, nasal NK/T lymphoma, skin squamous cell carcinoma-burn scar related leukaemia_lymphoma, epithelial, other TSG missense FALSE NA NA NA NA NA NA NA NA NA 2032 ABCA5::TNRC6C ENSG00000154265.16::ENSG00000078687.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCA5 ENSG00000154265.16 protein_coding - - chr17:69244311-69327244:- chr17:69323739:- chr17:67240452-67323385:- chr17:67319880:- TNRC6C ENSG00000078687.18 protein_coding + - chr17:77958703-78108822:+ chr17:78063792:- chr17:75954785-76104903:+ chr17:76059873:- chr17:69323450,chr17:69323455 chr17:78064228,chr17:78064230 NA NA chr17:67319591,chr17:67319596 chr17:76060309,chr17:76060311 NA NA sense antisense unknown intron intron duplication/5'-5' medium none none none 4 4 2 11 12 ENST00000593153.5 unknown upstream downstream mismatches(1) CAGCGTCTCGGGCTAGAGTGCAGTGGTGCGATCAAAGTTCACTGCAGCCTTGAACGTCTGGACTCTAGaGACCCTGCTGAATAGCTGGGGCTACAGGCGTGTGTCACTGCGCCCAG...CAGAAGCAGTGTTCCTCATGGGCTGTGCCAAACAGACTGAGGGTTGGATTTAGCCCCCACCTCTTTCATCATAGTTTGCACATCCTTGATCTTTAAGGACTCTCAGGAAGCCTTGATAAAGGAATCTGTG|ACACAGATCACCTTATCTGGGCAAAGAAATGAGAAGATGGCAGATTAAAAACATAAAG___AGACAGCAAGACCAAGCCCTCCCCTTCCTCCTCAGCCTGCTCCTCAACATGAAGATGATGAGGATGAAGACCTTTATGATGATCCAATTCCACCTAATGAATAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2035 GFPT1::AFF3 ENSG00000198380.13::ENSG00000144218.21 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GFPT1 ENSG00000198380.13 protein_coding - - chr2:69319780-69387250:- chr2:69323200:- chr2:69546912-69614382:- chr2:69550332:- AFF3 ENSG00000144218.21 protein_coding - + chr2:99545419-100192428:- chr2:99747852:+ chr2:100161881-100808890:- chr2:100364314:+ NA NA chr2:69323199,chr2:69323203 chr2:99747853,chr2:99747849 NA NA chr2:69550331,chr2:69550335 chr2:100364315,chr2:100364311 sense antisense unknown 3'UTR intron inversion/5'-5' medium none Glutamine_amidotransferase_domain(100%),SIS_domain(100%)| GATase_4(100%),GATase_6(100%),GATase_7(100%),SIS(100%)| 2 3 2 69 7 ENST00000361060.5 unknown upstream upstream none CTTAACACAAAAGAGACATTGTAATGAGGCACACCACTAAAGTGAGCATGCCCAATTAAAACCAGTGTAATATAGGATAAGAAAATCTGATTTTTCAAAAAAGATACTCTACATAAAGAATCCTTCATATAAAAAGTTCTTTCTTGTAGTACATTTAAAGTTTTAATTCACTCATGTATAACTGAGAGTTCCTTTGAGCCCTTTTTAGGCAGGGAGGCATG|CTAGTGCCAAAGTAATTGGCTATAAcCCCAGTGTTCTAAACTGTGCCACTCTGCGGGTACAAATAATGTCCCATTATCATTCTTACCGGCATTTGGCCAGCCTGCTTGTGGAGGGGTCAGCTACCTTACCAGGCCACTCCCACATTTTAGGTCCTCTTATCAGACACCCTGATAAGGTGTCTGCTGGCAAACCTCGGGTCCTGGGGCTGCAGCTTTTGAAGGAGGACTGTTCTTCCCAGCCAGCTGCAAAACCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2036 TBCK::KLF3-AS1 ENSG00000145348.17::ENSG00000231160.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TBCK ENSG00000145348.17 protein_coding - - chr4:106041599-106316683:- chr4:106253887:- chr4:106962756-107237840:- chr4:107175044:- KLF3-AS1 ENSG00000231160.12 lncRNA - + chr4:38602438-38664926:- chr4:38625923:+ chr4:38604059-38666547:- chr4:38627544:+ NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/5'-5' medium none Protein_kinase_domain(47%)| Kinase-like(80%),PK_Tyr_Ser-Thr(89%),Pkinase(89%)| 1 1 4 4 3 unknown unknown upstream upstream mismatches(1) TTCTCTGGCCAGAAACATCACATAACATTTGTTCTTCAAGATTGGAAAGAAGTTAAAAAAAAAAGAAAGAAAAGAAAATGAAAGATACgTCACATACGTGG...ATTTTTGTTGCTGGAAGAAGAATGTATTCTGTGTGATCCCTGATAGGAGGGAGAGAGCATAAGGAAGCCTGTATATAGGTTCCTGGAGACTCCCTCTCTATCTTTGTCCCTTGTGATCCAGCTATGCCCTTACTATGTCAC|CGTTGAGACAGATCCTTGGCTTTTGCCACAGCACTACCTAGAGCATAGGAATAGCTAGAGAAAAAGGAGGAGCAAACCTCAATCCATAAACAAGGCTGAGGCCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN TBC domain-containing protein kinase-like protein Other TBCK Q8TEA7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2040 SLC29A4::WIPI2 ENSG00000164638.11::ENSG00000157954.15 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC29A4 ENSG00000164638.11 protein_coding + + chr7:5274369-5306912:+ chr7:5294934:+ chr7:5314000-5346543:+ chr7:5334565:+ WIPI2 ENSG00000157954.15 protein_coding + + chr7:5190196-5233840:+ chr7:5230835:+ chr7:5229827-5273471:+ chr7:5270466:+ chr7:5296216,chr7:5296207 chr7:5230222,chr7:5230210 NA NA chr7:5335847,chr7:5335838 chr7:5269853,chr7:5269841 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Nucleoside_transporter(10%)| Nucleoside_tran(28%)| 2 0 2 17 445 ENST00000406453.3 ENST00000288828.9 downstream upstream none CTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACTACCTGCATCACAAGTACCCAG___GGACCTCCATCG...TTTTTATCAGCATCTGCGACGTGTGGCTGCAGCTCTTCTCTCGGGACCAGGCCTACGCCATCAACCTGGCCGCTGTGGGCACCGTGGCCTTCGGCTGCACA...ACGGGTACACGGGGATGCTGCCCAAGCGGTACACGCAGGGGGTGATGACCGGGGAGA|CCTACACAGACGACCTGGGTGCTGTGGGTGGCGCCTGCCTGGAGGACGAGGCCAGCGCCCTGCGCCTGGATGAGGACAGCGAGCACCCGCCCATGATTCTTCGGACTGACTGAACTTGACCTGTGACCTCTGACCCGGGGAGCAGAGAACACTGGCTTCACAGA GYTGMLPKRYTQGVMTGE|tYTDDLGAVGGACLEDEASALRLDEDSEHPPMILRTD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2050 ENSG00000227400::VLDLR-AS1 ENSG00000227400.2::ENSG00000236404.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000227400 ENSG00000227400.2 lncRNA - - chr2:153421616-153593288:- chr2:153592866:- chr2:154278130-154449801:- chr2:154449379:- VLDLR-AS1 ENSG00000236404.12 lncRNA - + chr9:2421597-2622457:- chr9:2453707:+ chr9:2421597-2622457:- chr9:2453707:+ chr2:153512796,chr2:153512809 chr9:2444428,chr9:2444414 NA NA chr2:154369309,chr2:154369322 chr9:2444428,chr9:2444414 NA NA sense antisense unknown exon intron translocation/5'-5' low none none none 0 0 3 13 3 ENST00000424322.1 unknown upstream upstream none CTCTGGCTTCCCTCCTGACGGATCTTTGTGATGCCAGGCAGGAATGAACTGTTTGGGGACCCAGCGAGTTCCCAGGGCCTTTCTGCTGCTTCTTCTACCCCTGTATTTCACCCGGCTCTCTAcATTGACTCAT...|...TGCgCCTGAACTTTGGCCCTCACATTTTTCTGATTATGGAACAAAATCATATGtCAtTGGCAAGTAGCTCATTCTCACGCGCATCCAATGTTCAATCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2053 SHISA9::SYNE2 ENSG00000237515.10::ENSG00000054654.20 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SHISA9 ENSG00000237515.10 protein_coding + + chr16:12901598-13240416:+ chr16:12916815:+ chr16:12995455-13334273:+ chr16:13010672:+ SYNE2 ENSG00000054654.20 protein_coding + + chr14:63761899-64226433:+ chr14:63852501:+ chr14:64228617-64693151:+ chr14:64319219:+ chr16:12918977,chr16:12918975,chr16:12918978 chr14:63809000,chr14:63808998,chr14:63808998 NA NA chr16:13012834,chr16:13012832,chr16:13012835 chr14:64275718,chr14:64275716,chr14:64275716 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none Wnt_and_FGF_inhibitory_regulator(86%)|Calponin_homology_(CH)_domain(100%),Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(100%) Shisa(4%)|CAMSAP_CH(100%),CH(100%),Hormone_recep(32%),KASH(100%),Spectrin(100%) 1 1 0 85 1 ENST00000558583.3 ENST00000344113.8 downstream upstream none CCGGCAAGCCCCCCGCCCGCAAGGACGACCCCTTGCACGACCCCACCAAGGACAAGAtCAACCTGATCGTCTACATCATCTGCGGGGcGGTGGCCGTCATG...CACGTCCAGCATTATGAGAACATGGACACGAGAACCCCCATAAATAATCTTC|GTGACCCCAAGATCCGGACCACACTACGAAATACGGATCCAGATTTTAAAGGCCTTCGAATCCAAAGTCCTCGTTTT...TCCATTGAGTCAAAGAATGGCATCTAGTCCTGAGCTTCCCACCGAAGATGAACAGGGTTCCTGGGGCATCGACGATCTCCATATTTCATTGCAAG___CTGAAC HVQHYENMDTRTPINNL|rdpkirttlrntdpdfkglriqspr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2058 NEURL1::SH3PXD2A ENSG00000107954.11::ENSG00000107957.17 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NEURL1 ENSG00000107954.11 protein_coding + + chr10:103493705-103592546:+ chr10:103571113:+ chr10:105253462-105352303:+ chr10:105330870:+ SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103661114:- chr10:105353784-105615342:- chr10:105420872:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Neuralized(14%)|SH3_domain(100%) Neuralized(6%)|SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 1 1475 269 ENST00000369780.9 ENST00000369774.9 downstream downstream none CTGCTCTTCCACCCGCACACCAAGGGCTCCCAGATCCTCATGGACCTCAGCCACAAGGCTGTCAAGAGGCAGGCCAGCTTCTGCAACGCCATCACCTTCAG...CTACGAGCAAGTCAGGCTGAAG|GTGCCGACGCCACCGCCGAGCCCATGATCCTGGAACAGTACGTGGTGGTGTCCAACTATAAGAAGCAGGAGAACTCGGA...CTCGGGATGACTCCGACATCAACACCTCTAAGACTGGAGAAG___TGTCCAAGAGACGCAAGGCCCATCTGCGGCGCCTGGATCGCCGGTGGACCCTGGGCGGG YEQVRLK|vptpppsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2063 CANX::HMGB3P22 ENSG00000127022.16::ENSG00000225051.5 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 330 TRUE 128 CANX ENSG00000127022.16 protein_coding + + chr5:179678628-179731641:+ chr5:179705852:+ chr5:179105629-179158642:+ chr5:179132853:+ HMGB3P22 ENSG00000225051.5 transcribed_processed_pseudogene + + chr5:179679032-179694768:+ chr5:179694306:+ chr5:179106033-179121769:+ chr5:179121307:+ chr5:179706109,chr5:179706105 chr5:179686961,chr5:179686954 NA NA chr5:179133110,chr5:179133106 chr5:179113962,chr5:179113955 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none Chibby(100%)| 103 100 64 11348 793 ENST00000681504.1 ENST00000442010.2 downstream upstream duplicates(180),mismatches(71) TCTTTACTGCGGCGCGGGGCAAGGTGTGCGGGCGGGAAGGGGCACGGGCACCCCCGCGGTCCCCGGGAGGCTAGAG___ATCATGGAAGGGAAGTGGTTGCTGTGTATGTTACTGGTGCTTGGAACTGCTATTGTTGAGGCTCATGATGGACATGATGATGATGTGATTGATATTGAGGATGACCTTGACGATGTCATTGAAGAGGTAGAAGACTCAAAACCAGATACCACTGCTCCTCCTTCATCTCCCAAG|AATTTTCCAAGAAGTGCTCTGAAAGGTGGAAGACAATGTCCGGGAAAGAGAAGTCTAAATTTGATGAAATGGCAAAGACGGATAAAGTGCACTGTGATCGGGAAATGAAGGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAGTGCCCCCAAAAGGCCACCATCTGGATTCTTCCTGTTCTCTTCGGAAATCCGCCCCAAGATCAAATCCAC MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEEVEDSKPDTTAPPSSPK|nfprsalkggrqcpgkrslnlmkwqrrikctvigk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2064 CANX::HMGB3P22 ENSG00000127022.16::ENSG00000225051.5 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 330 TRUE 128 CANX ENSG00000127022.16 protein_coding + + chr5:179678628-179731641:+ chr5:179699102:+ chr5:179105629-179158642:+ chr5:179126103:+ HMGB3P22 ENSG00000225051.5 transcribed_processed_pseudogene + + chr5:179679032-179694768:+ chr5:179694306:+ chr5:179106033-179121769:+ chr5:179121307:+ chr5:179706109,chr5:179706105 chr5:179686961,chr5:179686954 NA NA chr5:179133110,chr5:179133106 chr5:179113962,chr5:179113955 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none Chibby(100%)| 1 0 6 7120 793 ENST00000679719.1 ENST00000442010.2 downstream upstream duplicates(1),mismatches(1) CTCGCTCGCGCGGCAGCGGTGGCCGAGGCCTCTTGGTTCTGCGGCACGTGACGGTCGGGCCGCCTCCGCCTCTCTCTTTACTGCGGCGCGGGGCAAGGTGTGCGGGCGGGAAGGGGCACGGGCACCCCCGCGGTCCCCGGGAGGCTAGAG|AATTTTCCAAGAAGTGCTCTGAAAGGTGGAAGACAATGTCCGGGAAAGAGAAGTCTAAATTTGATGAAATGGCAAAGACGGATAAAGTGCACTGTGATCGGGAAATGAAGGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAGTGCCCCCAAAAGGCCACCATCTGGATTCTTCCTGTTCTCTTCGGAAATCCGCCCCAAGATCAAATCCACAAACCCTGGCATCTCTATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAACTTAAATGACAGTGAAAAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2065 CANX::HMGB3P22 ENSG00000127022.16::ENSG00000225051.5 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 330 TRUE 128 CANX ENSG00000127022.16 protein_coding + + chr5:179678628-179731641:+ chr5:179705804:+ chr5:179105629-179158642:+ chr5:179132805:+ HMGB3P22 ENSG00000225051.5 transcribed_processed_pseudogene + + chr5:179679032-179694768:+ chr5:179694306:+ chr5:179106033-179121769:+ chr5:179121307:+ chr5:179706109,chr5:179706105 chr5:179686961,chr5:179686954 NA NA chr5:179133110,chr5:179133106 chr5:179113962,chr5:179113955 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none Chibby(100%)| 0 1 34 11244 793 ENST00000681504.1 ENST00000442010.2 downstream upstream duplicates(12),mismatches(6) TCCGCCTCTCTCTTTACTGCGGCGCGGGGCAAGGTGTGCGGGCGGGAAGGGGCACGGGCACCCCCGCGGTCCCCGGGAGGCTAGAG___ATCATGGAAGGGAAGTGGTTGCTGTGTATGTTACTGGTGCTTGGAACTGCTATTGTTGAGGCTCATGATGGACATGATGATGATGTGATTGATATTGAGGATGACCTTGACGATGTCATTGAAGAG|AATTTTCCAAGAAGTGCTCTGAAAGGTGGAAGACAATGTCCGGGAAAGAGAAGTCTAAATTTGATGAAATGGCAAAGACGGATAAAGTGCACTGTGATCGGGAAATGAAGGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAGTGCCCCCAAAAGGCCACCATCTGGATTCTTCCTGTTCTCTTCGGAAATCCGCCCCAAGATCAAATCCACAAACCCTG MEGKWLLCMLLVLGTAIVEAHDGHDDDVIDIEDDLDDVIEE|nfprsalkggrqcpgkrslnlmkwqrrikctvigk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2066 ZNF787::PARP6 ENSG00000142409.6::ENSG00000137817.17 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF787 ENSG00000142409.6 protein_coding - - chr19:56087366-56121295:- chr19:56103139:- chr19:56598732-56632664:- chr19:56614508:- PARP6 ENSG00000137817.17 protein_coding - - chr15:72241181-72272999:- chr15:72267671:- chr15:72533522-72565340:- chr15:72560012:- chr19:56101933,chr19:56101933 chr15:72268686,chr15:72268710 NA NA chr19:56613302,chr19:56613302 chr15:72561027,chr15:72561051 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Poly(ADP-ribose)_polymerase_catalytic_domain(100%) |PARP(100%) 51 66 63 178 399 ENST00000610935.2 ENST00000569795.6 upstream downstream duplicates(58),low_entropy(1),mismatches(12) TGAGTCGCCGCTGCCGCCGCTGCCACCATCCGCGAGGCAGGAGAGAGGAGGAGGAGTGCGGCGCGGCGGCCCCGGGACCAAGGAG___GGACCCAGACATGGAGCTGCGGGAAGAAGCCTGGTCTCCGGGGCCGCTGGATTCTGAGGACCAGCAGATGGCCAGTCACGAGAACCCAG|GACAGTGACTTGTTACCACCGCAACAGCAGAGCCTGCCATCCCCAACAGATCACCAGTTGTCCCTGACATCGTGCCCTACCTTGTCTCCCTTTGTGGTCTCCTAAATGCCCATCTCGTTGGCCTTGGTTCGGCTAGTGGTATGGAGGGGTGCTGCCTAGCACTGACCTGAGAGTGTGTGTGACCCACTGACCCAATG___GACATCAAAGGCCAGTTCTGGAATGATGACGACTCGGAGGGAGATAATGAATCAGAGG MELREEAWSPGPLDSEDQQMASHENP|gq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2067 SRSF7::DHX57 ENSG00000115875.19::ENSG00000163214.21 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 331 TRUE 129 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38746694:- chr2:38970741-38978636:- chr2:38973836:- DHX57 ENSG00000163214.21 protein_coding - - chr2:38797729-38875934:- chr2:38868411:- chr2:39024871-39103075:- chr2:39095553:- chr2:38746351,chr2:38746353,chr2:38746353 chr2:38875344,chr2:38875333,chr2:38875343 NA NA chr2:38973493,chr2:38973495,chr2:38973495 chr2:39102486,chr2:39102475,chr2:39102485 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|CCCH-type_zinc_finger(100%),DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%),RWD_domain(100%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(100%)|DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%),RWD(100%),zf-CCCH(100%),zf-CCCH_2(100%),zf-CCCH_4(100%) 117 42 16 4425 190 ENST00000446327.6 ENST00000457308.6 upstream downstream duplicates(84),low_entropy(1),mismatches(3) CTAGATCACATTCTCGATCCAGAGGAAGGCGATACTCTCGCTCACGCAGCAGGAGCAGGGGACGAAG___GTCAAGGTCAGCATCTCCTCGACGATCAAGATCTATCTCTCTTCGTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAAAAGGATCGAGGTATTTCCA___ATCCCCGTCGAGGTCAAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAG|GTGAAAATGAGTTCTTCAGTAAGAAGAAAAGGCAAGCCAGGCAAAGGAGGTGGAAAAGGGTCTTCTAGAGGAGGAAGAGGAGGCAGGAGTCACGCCAGTAAAT RSHSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2068 SRSF7::DHX57 ENSG00000115875.19::ENSG00000163214.21 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 331 TRUE 129 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38746694:- chr2:38970741-38978636:- chr2:38973836:- DHX57 ENSG00000163214.21 protein_coding - - chr2:38797729-38875934:- chr2:38863519:- chr2:39024871-39103075:- chr2:39090661:- chr2:38746351,chr2:38746353,chr2:38746353 chr2:38875344,chr2:38875333,chr2:38875343 NA NA chr2:38973493,chr2:38973495,chr2:38973495 chr2:39102486,chr2:39102475,chr2:39102485 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|CCCH-type_zinc_finger(100%),DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%),RWD_domain(100%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(100%)|DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%),RWD(100%),zf-CCCH(100%),zf-CCCH_2(100%),zf-CCCH_4(100%) 4 1 3 4425 432 ENST00000446327.6 ENST00000457308.6 upstream downstream none CTAGACCTTGAG___GTCACGGTCTAGATCACATTCTCGATCCAGAGGAAGGCGATACTCTCGCTCACGCAGCAGGAGCAGGGGACGAAG___GTCAAGGTCAGCATCTCCTCGACGATCAAGATCTATCTCTCTTCGTAGATCAAGATCAGCTTCACTCAGAAGATCTAGGTCTGGTTCTATAAAAGGATCGAGGTATTTCCA___ATCCCCGTCGAGGTCAAGATCAAGATCCAGGTCTATTTCACGACCAAGAAGCAG|ACCTAGCAACAGTAACATAAGCAAAGGAGAGTCACGCCCAAAATGGAAACCCAAAGCCAAAGTACCCCTTCAGACTCTACATATGACTTCTGAGAATCAAGAGAAAGTGAAAGCTCTTCTCCGAGACCTGCAAGAACAAGATGCTGATGCTGGATCTGA___AAGAGGCCTTTCTGGGGAGGAGGAAGATGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2069 SRSF7::DHX57 ENSG00000115875.19::ENSG00000163214.21 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 331 TRUE 129 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38748579:- chr2:38970741-38978636:- chr2:38975721:- DHX57 ENSG00000163214.21 protein_coding - - chr2:38797729-38875934:- chr2:38848402:- chr2:39024871-39103075:- chr2:39075544:- chr2:38746351,chr2:38746353,chr2:38746353 chr2:38875344,chr2:38875333,chr2:38875343 NA NA chr2:38973493,chr2:38973495,chr2:38973495 chr2:39102486,chr2:39102475,chr2:39102485 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|DEAD/DEAH_box_helicase(18%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(100%)|DEAD(1%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%) 1 0 0 3978 468 ENST00000446327.6 ENST00000457308.6 upstream downstream none TTTGTGGCTCCCGAGTGAGGGTTGAACTATCGACAGGCATGCCTCGGAGATCACGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCAAATGATAGA...GGTCACGGTCTAGATCACATTCTCGATCCAGAGGAAGGCGATACTCTCGCTCACGCAGCAGGAGCAGGGGACGAAG|TGACTTCTTGCTGCTAGTTTTGAAG SRSRSHSRSRGRRYSRSRSRSRGRs|DFLLLVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2070 ZNF787::ENSG00000273025 ENSG00000142409.6::ENSG00000273025.1 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF787 ENSG00000142409.6 protein_coding - - chr19:56087366-56121295:- chr19:56103139:- chr19:56598732-56632664:- chr19:56614508:- ENSG00000273025 ENSG00000273025.1 protein_coding - - chr15:72266746-72319946:- chr15:72267671:- chr15:72559087-72612287:- chr15:72560012:- chr19:56101933,chr19:56101933 chr15:72268686,chr15:72268710 NA NA chr19:56613302,chr19:56613302 chr15:72561027,chr15:72561051 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none none none 51 53 36 178 399 ENST00000610935.2 ENST00000569547.1 upstream downstream duplicates(47),low_entropy(1),mismatches(8) TGAGTCGCCGCTGCCGCCGCTGCCACCATCCGCGAGGCAGGAGAGAGGAGGAGGAGTGCGGCGCGGCGGCCCCGGGACCAAGGAG___GGACCCAGACATGGAGCTGCGGGAAGAAGCCTGGTCTCCGGGGCCGCTGGATTCTGAGGACCAGCAGATGGCCAGTCACGAGAACCCAG|GACAGTGACTTGTTACCACCGCAACAGCAGAGCCTGCCATCCCCAACAGATCACCAGTTGTCCCTGACATCGTGCCCTACCTTGTCTCCCTTTGTGGTCTCCTAAATGCCCATCTCGTTGGCCTTGGTTCGGCTAGTGGTATGGAGGGGTGCTGCCTAGCACTGACCTGAGAGTGTGT MELREEAWSPGPLDSEDQQMASHENP|gq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2071 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE TRUE 185 TRUE 332 TRUE 130 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79809795:- chr12:80167343-80329240:- chr12:80203575:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79808919,chr12:79808923 chr12:79669629,chr12:79669618 NA NA chr12:80202699,chr12:80202703 chr12:80063409,chr12:80063398 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 51 25 32 529 2112 ENST00000261207.9 ENST00000328827.9 upstream downstream duplicates(42),mismappers(1),mismatches(8) AAAATTTCTCCCAAAGAAGAAGAGAGAAAAGATGAGTCTCCTGCAACTTGGAGGTTAGGACTTAGAAAGACGGGCAGCTATGGTGCACTTGCTGAAATCACAGCATCTAAAGAGGGTCAGAAAGAAAAAGATACTGCAGGTGTTACACGTTCAGCTTCAAGTCCCAGACTTTCCTCCTCTTTGGATAATAAAGAAAAG|TGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATaCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG___CACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATA KISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKDTAGVTRSASSPRLSSSLDNKEK|CLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2072 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 332 TRUE 130 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79809795:- chr12:80167343-80329240:- chr12:80203575:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79668408:- chr12:79968759-80084744:- chr12:80062188:- chr12:79808919,chr12:79808923 chr12:79669629,chr12:79669618 NA NA chr12:80202699,chr12:80202703 chr12:80063409,chr12:80063398 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 30 13 52 529 115 ENST00000261207.9 ENST00000547571.1 upstream downstream duplicates(34),mismatches(7) GTCAAGCAACACCTACATCACCTATTAAAAAG___TTTCCAACCACAGCTACAAAAATTTCTCCCAAAGAAGAAGAGAGAAAAGATGAGTCTCCTGCAACTTGGAGGTTAGGACTTAGAAAGACGGGCAGCTATGGTGCACTTGCTGAAATCACAGCATCTAAAGAGGGTCAGAAAGAAAAAGATACTGCAGGTGTTACACGTTCAGCTTCAAGTCCCAGACTTTCCTCCTCTTTGGATAATAAAGAAAAG|AGGTAAAGAGTTCAGAAGTAAGATAAAAGAAGACCAAAGACAAACTACTTCAGGGCTATTTCGTGAAGCAGAAACAGCACTTCATCAGGTGGCTTTTGCGGGAGGAAGCACTGTTAATGCCCTTAGGCGTAAGGGTAAATGATTCAACTTACTTAAGGAAATACATTTTCTTCTAACTTGAAACATTAAAAACAAAAAATATCTACAAACTTTTACTATAGAAAGATCAAATGTGGCCAGCACTTTGGGAGGCTGAGGTGGG QATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKDTAGVTRSASSPRLSSSLDNKEK|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2073 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 332 TRUE 130 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79817394:- chr12:80167343-80329240:- chr12:80211174:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79808919,chr12:79808923 chr12:79669629,chr12:79669618 NA NA chr12:80202699,chr12:80202703 chr12:80063409,chr12:80063398 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 3 1 9 451 2112 ENST00000261207.9 ENST00000328827.9 upstream downstream duplicates(5),mismatches(2) GTTGATTATTGAACCAGAGAAAAATGCATCCCGTATTGAATCTCTGGAACAAGAAAAGGTTGATGAAGAAGAAGAAGGAAAGAAGGATGAGTCTAGCTGCTCTAGTGAAGAAGATGAGGAAGATGACTCGGAATCAGAAGCTGAAACAG___ATAAGACAAAACCCCTGGCTTCTGTAACTAATGCCAACACTTCTAGTACACAAGCAGCTCCTGTAGCTGTTACAACACCTACTGTGTCATCAGGTCAAGCAACACCTACATCACCTATTAAAAAG|TGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATaCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG___CACAACCAGTGTCTCTGAAG LIIEPEKNASRIESLEQEKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSGQATPTSPIKK|CLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2075 MSR1::TFEC ENSG00000038945.15::ENSG00000105967.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MSR1 ENSG00000038945.15 protein_coding - - chr8:16107878-16567490:- chr8:16383279:- chr8:15965387-16424999:- chr8:16240788:- TFEC ENSG00000105967.16 protein_coding - + chr7:115935148-116159896:- chr7:116099551:+ chr7:115575202-115799950:- chr7:115739605:+ chr8:16335768,chr8:16335770 chr7:116070763,chr7:116070761 NA NA chr8:16193277,chr8:16193279 chr7:115710817,chr7:115710815 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 26 20 42 251 141 ENST00000518026.5 unknown upstream upstream duplicates(24) TGAAGAGGGGCTTTCCGCCATGATTTTAAGTTCCTGAGGCCTCCCCAGCCATGCAGAACG___ATTGCCTGTTTTACTTCTCACCATTGATTTATGTTGCCAAAACAAAGAG|ATCCACATATGAAGAAGCCAAACCATACTGCTAGAGACACACGGCTCAGCCAACAGTCATCAGTCAGTCTCAAACAAGACTTTTGAGTGAAGCTGTCTTAAAATATCAATCTCCAGGACACTCACCCAACAAGATGCAGAATGGAAGCAAGCGAATGAACCTAGCCCATATTGCTAACCCAGAGAATCATGAAGAAGTAACATAGTTGTTTTAGGTCACTGATTTTCATAGTAGTTGGTATTGCAACAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2076 RALA::CDK13 ENSG00000006451.8::ENSG00000065883.18 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE TRUE 186 TRUE 333 TRUE 131 RALA ENSG00000006451.8 protein_coding + + chr7:39623565-39708120:+ chr7:39623825:+ chr7:39663164-39747719:+ chr7:39663424:+ CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:39997494:+ chr7:39989720-40139179:+ chr7:40037093:+ chr7:39660786,chr7:39660785 chr7:39988668,chr7:39988664 NA NA chr7:39700385,chr7:39700384 chr7:40028267,chr7:40028263 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Protein_kinase_domain(100%) |ABC1(100%),Haspin_kinase(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 26 13 24 371 270 ENST00000005257.7 ENST00000181839.10 downstream upstream duplicates(20),mismatches(2) GGTGGATCTCCCCAGAGCAAAGCGTCGGAGTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCAGCCGCCCAGGCTCCCCCGCCACCCGTCAGACTCCTCCTTCGACCGCTCCCGGCGCGGGGCCTTCCAGGCGACAAGGACCGAGTACCCTCCGGCCGGAGCCACGCAGCCGCGGCTTCCGGAGCCCTCGGGGCGGCGGACTGGCTCGCGGTGCAG|CTTACGAGGAAATATTTCAGTAAAAGCAGTTAAAAAAGAAGTAGAAAAGAAACTCCGATGTCTTCTTGCTGATTTACCGCTGCCCCCTGAGCTACCAGGAGGAGATGATCTTTCAAAGAGTCCAGAGGAAAAGAAAACAGCAACACAGTTACATAGTAAAAGGAGGCCTAA___AATATGTGGGCCTCGCTATGGTGAAACCAAAGAAAAAGATATTGACTGGGGAAAACGCTGCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2077 RALA::CDK13 ENSG00000006451.8::ENSG00000065883.18 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 333 TRUE 131 RALA ENSG00000006451.8 protein_coding + + chr7:39623565-39708120:+ chr7:39623825:+ chr7:39663164-39747719:+ chr7:39663424:+ CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:40045836:+ chr7:39989720-40139179:+ chr7:40085435:+ chr7:39660786,chr7:39660785 chr7:39988668,chr7:39988664 NA NA chr7:39700385,chr7:39700384 chr7:40028267,chr7:40028263 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Protein_kinase_domain(75%) |ABC1(100%),Haspin_kinase(26%),PK_Tyr_Ser-Thr(41%),Pkinase(41%) 1 0 1 371 252 ENST00000005257.7 ENST00000181839.10 downstream upstream mismatches(1) CAAAGCGTCGGAGTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCAGCCGCCCAGGCTCCCCCGCCACCCGTCAGACTCCTCCTTCGACCGCTCCCGGCGCGGGGCCTTCCAGGCGACAAGGACCGAGTACCCTCCGGCCGGAGCCACGCAGCCGCGGCTTCCGGAGCCCTCGGGGCGGCGGACTGGCTCGCGGTGCAG|GTGCATTTTATCTGGTGTTTGAATATATGGACCATGATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATAAAGTCATTTATGAGACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2078 SLC4A7::NEK10 ENSG00000033867.17::ENSG00000163491.18 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE TRUE 187 TRUE 334 FALSE NA SLC4A7 ENSG00000033867.17 protein_coding - - chr3:27372721-27484420:- chr3:27418486:- chr3:27414212-27525911:- chr3:27459977:- NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27119868:- chr3:27147975-27410951:- chr3:27161359:- chr3:27416047,chr3:27416049 chr3:27129712,chr3:27129711 NA NA chr3:27457538,chr3:27457540 chr3:27171203,chr3:27171202 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Band_3_cytoplasmic_domain(100%)| Band_3_cyto(100%)| 12 14 7 119 79 ENST00000425128.6 ENST00000691995.1 upstream downstream duplicates(21),mismappers(10),mismatches(3) CAATAATTGCATTTGTGAGACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAG___GTTTTTGTTTTTGTTATTGGGTCCAGCG...CACCACAtTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGATGAG___ATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGTCCCTTCTCAG|TTATCTCAGGGATCTCCAGAACCGATTGAGCCCAACTTTTTCACAGCAGATTACCATTTATTACATCGTTCATCCGGTGGAAACAGCCTGTCCCCAAATGACCCTACAG___GTTTACCAACCAGCATTGAATTGGAGGAAGGAATAACATATGAACAGATGCAG___ACTGTGATTGAAGAAGTCCTTGAGGAAAGTGGCTATTACAATTTTACATCTAACA PhYHEIGRSIATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQ|LSQGSPEPIEPNFFTADYHLLHRSSGGNSLSPNDPTGLPTSIELEEGITYEQMQTVIEEVLEESGYYNFTSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2087 PRSS23::TMEM135 ENSG00000150687.12::ENSG00000166575.17 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE TRUE 188 FALSE NA FALSE NA PRSS23 ENSG00000150687.12 protein_coding + + chr11:86791059-86952910:+ chr11:86823593:+ chr11:86502101-86663952:+ chr11:86534635:+ TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87236638:+ chr11:86748886-87039866:+ chr11:86947680:+ chr11:86835546,chr11:86835547 chr11:87204651,chr11:87204649 NA NA chr11:86546588,chr11:86546589 chr11:86915693,chr11:86915691 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Trypsin(100%)|N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(0%),Tim17/Tim22/Tim23/Pmp24_family(100%) Trypsin(100%),Trypsin_2(100%)|TMEM135_C_rich(16%),Tim17(100%) 11 6 7 52 157 ENST00000533902.2 ENST00000305494.6 downstream upstream duplicates(18),low_entropy(2),mismatches(2) TGGGAGCCGCGCGCTCTCTCCCGGCGCCCACACCTGTCTGAGCGGCGCAGCGAGCCGCGGCCCGGGCGGGCTGCTCGGCGCGG___ATGGCTCCCTAATGAGTAGAATGAGACCTGTGTGCCAACCCTGGCCTAGTCCTCATGCCCCCACAACTGTGAAGCGAGAGGGCTCAACAGTTTCGAATTCAATTCAACCACCACCTCCTGAATACCAACTAGGTTCCAGGACCTGGCTAGAAGCAGAGACACCAGGACAGAAAAGACAGTGTTCTGCTTTCATGGAGTTCACAGAAGAGTCGAGGAG|GTCCTTTTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAG___GTGCAAGGATGGCTTGAAAGGATTTACATTTTCTGCACTTAG___GTTCATTGTAGGGAAGGAAGAAATTCCCACACATTCTTT MSRMRPVCQPWPSPHAPTTVKREGSTVSNSIQPPPPEYQLGSRTWLEAETPGQKRQCSAFMEFTEESRr|sfcfasqlpctcsfsgarma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2093 AMN1::ENSG00000283907 ENSG00000151743.11::ENSG00000283907.2 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AMN1 ENSG00000151743.11 protein_coding - - chr12:31671142-31729121:- chr12:31697361:- chr12:31824076-31882055:- chr12:31850295:- ENSG00000283907 ENSG00000283907.2 lncRNA + + chr19:35557928-35581960:+ chr19:35581852:+ chr19:36048830-36072862:+ chr19:36072754:+ chr12:31693517,chr12:31693522,chr12:31693524 chr19:35580670,chr19:35580665,chr19:35580662 NA NA chr12:31846451,chr12:31846456,chr12:31846458 chr19:36071572,chr19:36071567,chr19:36071564 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Leucine_Rich_repeat(100%)| LRR_6(100%)| 11 1 0 124 1 ENST00000281471.11 ENST00000702449.1 upstream upstream duplicates(5) AGTTTCTGTAACTTCAGAAG___GAATAAAAGCTGTGGCTTCATCTTGTTCATACCTACACGAAGCTTCTTTGAAAAGATGCTGCAATCTCACTGACGAAGGAGTCGTTGCTCTTGCACTCAATTGCCAGCTGCTAAAGATCATCGATTTAGGTGGCTGCTTAAGTATTACTGATGTGTCCTTACATGCATTAGGAAAAAACTGCCCATTTTTGCAGTGTGTCGACTTTTCAGCTACTCAG___GTATCTGACAGTGGTGTGATTGCACTTGTTAGTGGACCTTGTGCGAAGAAATTAGAG|AATTTGACAAGTTGATCCTAAAAGTCATGTGGAAATGAAAAGGATGCAGAATAACCTAGCAATGTTGAAAAAGTA VSVTSEGIKAVASSCSYLHEASLKRCCNLTDEGVVALALNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSGPCAKKLE|nlts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2099 SLC15A1::DOCK9 ENSG00000088386.17::ENSG00000088387.22 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 340 TRUE 132 SLC15A1 ENSG00000088386.17 protein_coding - - chr13:98683801-98752672:- chr13:98687581:- chr13:99336055-99404926:- chr13:99339835:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98837609:- chr13:99445683-99738879:- chr13:99489863:- chr13:98686416,chr13:98686425 chr13:98842183,chr13:98842189 NA NA chr13:99338670,chr13:99338679 chr13:99494437,chr13:99494443 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none POT_family(94%)|DHR-2__Lobe_A(100%) PTR2(97%)|DHR-2(100%) 2 3 2 37 362 ENST00000376503.10 ENST00000652315.1 upstream downstream duplicates(4) CTCAACAGAGATTCCGCCACAATGTCAACCTAATTTCAATACTTTCTACCTTGAATTTGGTAGTGCTTATACCTATATAGTCCAAAGGAAG___AATGACAGCT...CCTGAAGTGAAGGTGTTTGAAGATATTTCAGCCAACACAGTTAACATGGCTCTGCAAATCCCGCAGTATTTTCTTCTCACCTGTGGCGAAGTGGTCTTCTCTGTCACGGGATTGGAATTCTCATATTCTCAG|GCTATGGCCACTCGGACGCAGATGTTCTGCACCAGTCATTACTTGAAGCCAACATTGCTACTGAGGTTTGCCTGACAGCTCTGGACACGCTTTCTCTATTTACATTGGCGTTTAAG___TAAAATCCACGAATGTCAAAACCCTACTAGATGCCACCTACTGAGCTAGACCAAAGTATGCGT...TGAAAAAAGTTTTTGATGTCTACCTGTGTTTTCTTCAAAAACATCAGTCTGAAACGGCTTTAAAAAATGTCTTCACTGCCTTAAGGTCCTTAATTTATAAG...GTGCTGTAACTCCAAGCTGAGCTCCATCAGGACGGAGGCCTCCCAGCTGCTCTACTTCCTGATGAGGAACAACTTTGATTACACTGGAAAGAAGTCCTTTG PEVKVFEDISANTVNMALQIPQYFLLTCGEVVFSVTGLEFSYSQ|amatrtqmfctshylkptlllrfa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2100 SLC15A1::DOCK9 ENSG00000088386.17::ENSG00000088387.22 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 340 TRUE 132 SLC15A1 ENSG00000088386.17 protein_coding - - chr13:98683801-98752672:- chr13:98702480:- chr13:99336055-99404926:- chr13:99354734:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98837609:- chr13:99445683-99738879:- chr13:99489863:- chr13:98686416,chr13:98686425 chr13:98842183,chr13:98842189 NA NA chr13:99338670,chr13:99338679 chr13:99494437,chr13:99494443 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none POT_family(82%)|DHR-2__Lobe_A(100%) PTR2(95%)|DHR-2(100%) 0 2 0 51 362 ENST00000376503.10 ENST00000652315.1 upstream downstream none CACTACCAGGTG___GTAAAGGATGGTCTTAACCAGAAGCCAGAAAAAGGGGAAAATGGAATCAG|GCTATGGCCACTCGGACGCAGATGTTCTGCACCAGTCATTACTTGAAGCCAACATTGCTACTGAGGTTTGCCTGACAGCTCTGGACACGCTTTCTCTATTTACATTGGCGTTTAAG___AACCAGCTCCTGGCCGACCATGGACATAATCCTCTCATGAAAAAAGTTTTTGATGTCTACCTGTGTTTTCTTCAAAAACATCAGTCTGAAACGGCTTTAAAAAATGTCTTCA HYQVVKDGLNQKPEKGENGIr|lwplgrrcsapvit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2101 DLG1::SH3D19 ENSG00000075711.21::ENSG00000109686.20 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 341 TRUE 133 DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197075837:- chr3:196769431-197026201:- chr3:196802708:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151122207:- chr4:152023903-152246757:- chr4:152043359:- chr3:197074476 chr4:151126757 NA NA chr3:196801347 chr4:152047909 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site translocation high none L27_1(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(100%),SH3_domain(100%)|Variant_SH3_domain(32%) L27_1(100%),MAGUK_N_PEST(21%),PDZ(100%),PDZ_2(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%)|Ribosomal_S3Ae(100%),SH3_1(1%),SH3_2(1%),SH3_9(1%) 3 1 2 959 206 ENST00000469073.2 ENST00000604030.7 upstream downstream duplicates(3),mismatches(4) CGATGAGGTCGGAGTGATTCCCAGTAAACGCAG___AGTTGAGAAGAAAGAACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGGG___TCATTCAATGACAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTC...GAACAAGGACCAGAGTGAGCAGGAAACAAGTGATGCTGACC___GAGATCCCTGACGACATGGGATCAAAAGGCCTGA|GCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAGAGGAGAAGCTTGTCTGTGTTCCTTGGCACAAGAACTCACTTGAACTATCACCTTGACTATCAGATATGTTTTTGCACTATTTTTTTTAACTGAAAAAGAAATATCTAAGCTGTACATGGTACACTAGAATTTTCTGAAAGCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2102 DLG1::SH3D19 ENSG00000075711.21::ENSG00000109686.20 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 341 TRUE 133 DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197076586:- chr3:196769431-197026201:- chr3:196803457:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151122207:- chr4:152023903-152246757:- chr4:152043359:- chr3:197074476 chr4:151126757 NA NA chr3:196801347 chr4:152047909 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none L27_1(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(100%),SH3_domain(100%)|Variant_SH3_domain(32%) L27_1(100%),MAGUK_N_PEST(21%),PDZ(100%),PDZ_2(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%)|Ribosomal_S3Ae(100%),SH3_1(1%),SH3_2(1%),SH3_9(1%) 7 1 2 2083 206 ENST00000667157.1 ENST00000604030.7 upstream downstream duplicates(3) GCAG___AGTTGAGAAGAAAGAACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGAGAGATAAAGGG___CAGTCATTCAATGACAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTCCCCTTCTACAAGAACAAGGACCAGAGTGAGCAGGAAACAAGTGATGCTGACC|GCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAGAGGAGAAGCTTGTCTGTGTTCCTTGGCACAAGAACTCACTTGAACTATCACCTTGACTATCAGATATGTTTTTGCACTATTTTTTTTAACTGAAAAAGAAATATCTAAGCTGTACATGGTACACTAGAATTTTCTGAAAGCAGAA RVEKKERARLKTVKFNSKTRDKGQSFNDKRKKNLFSRKFPFYKNKDQSEQETSDAD|rwrynnragicr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2103 PIK3AP1::LYSMD4 ENSG00000155629.15::ENSG00000183060.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 342 TRUE 134 PIK3AP1 ENSG00000155629.15 protein_coding - - chr10:96593315-96720514:- chr10:96628398:- chr10:98353072-98480271:- chr10:98388155:- LYSMD4 ENSG00000183060.16 protein_coding - - chr15:99715697-99733561:- chr15:99720966:- chr15:100255902-100273766:- chr15:100261171:- chr10:96627249,chr10:96627250,chr10:96627252 chr15:99725576,chr15:99725576,chr15:99725576 NA NA chr10:98387006,chr10:98387007,chr10:98387009 chr15:100265781,chr15:100265781,chr15:100265781 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Dof__BCAP__and_BANK_(DBB)_motif_(100%),Toll/interleukin-1_receptor_domain(100%)| DBB(100%),TIR_3(100%)| 1 1 3 62 12 ENST00000339364.10 ENST00000604213.1 upstream downstream duplicates(1) CGAGGATCTCTATGAGTCCATGGCTGCCTTTGTCCCAGCTGCCACTGAAGACCTCT___ATGTTGAAATGCTTCAGGCCAGTACATCTAACCCAATCCCTGGAGAT...CCACTAAGGACTCTATGATCCGCAAGTTTTTAGAAG|GAAAGATCTAGGAGAGAGGGAGAAATTGATGCTGCCAGAAAGAGGGGACAGTTACAGAAGCGAAGACCTTGAGAAGGAGATGATGAGACCCAGGATGtAACACAGAAGGCTTGGACTTAGATAAGGGCACCAAGGTCCCTCGACAGTGCC...GGTCGGTCTCATCAGATTCCATCTATTTTCTCAATGGAAAATGTG?GAGGAAGTAACCAGCTGAGAAGAGAAGGAAGTGGTCTTGGAGGTcTGAAAGGAGA TKDSMIRKFLE|gki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2104 PIK3AP1::LYSMD4 ENSG00000155629.15::ENSG00000183060.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 342 TRUE 134 PIK3AP1 ENSG00000155629.15 protein_coding - - chr10:96593315-96720514:- chr10:96628398:- chr10:98353072-98480271:- chr10:98388155:- LYSMD4 ENSG00000183060.16 protein_coding - - chr15:99715697-99733561:- chr15:99717822:- chr15:100255902-100273766:- chr15:100258027:- chr10:96627249,chr10:96627250,chr10:96627252 chr15:99725576,chr15:99725576,chr15:99725576 NA NA chr10:98387006,chr10:98387007,chr10:98387009 chr15:100265781,chr15:100265781,chr15:100265781 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Dof__BCAP__and_BANK_(DBB)_motif_(100%),Toll/interleukin-1_receptor_domain(100%)| DBB(100%),TIR_3(100%)| 1 1 0 62 20 ENST00000339364.10 ENST00000496108.5 upstream downstream duplicates(1) CATGGCTGCCTTTGTCCCAGCTGCCACTGAAGACCTCT___ATGTTGAAATGCTTCAGGCCAGTACATCTAACCCAATCCCTGGAGATGGTTTCTCTCGGGCCACTAAGGACTCTATGATCCGCAAGTTTTTAGAAG|CTGCGTTTGCTTTGGTTAGCTAGAAAGCAGGCCCATCATGCATCTGTAAG...TCTAAGCCGAGTAAGATGCCCTGTCAATCTGGGTCCTCTGGGAAGCAAGACTGATGAAATGAGGAGCACCAAAGCTTTACACCCCAGCTATGTGCATTTGG MAAFVPAATEDLYVEMLQASTSNPIPGDGFSRATKDSMIRKFLE|aafalvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2106 ZNF562::RAD21L1 ENSG00000171466.10::ENSG00000244588.6 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF562 ENSG00000171466.10 protein_coding - - chr19:9641807-9675100:- chr19:9674632:- chr19:9752483-9785776:- chr19:9785308:- RAD21L1 ENSG00000244588.6 protein_coding + - chr20:1226044-1296421:+ chr20:1262687:- chr20:1206688-1277065:+ chr20:1243331:- chr19:9669731 chr20:1265386 NA NA chr19:9780407 chr20:1246030 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 2 2 1 32 50 ENST00000585350.1 unknown upstream downstream duplicates(1) CCGCTGTGGTGAGTTCTACCTGCTTGGGGGTCCGGGACATACCAGCGGGGCGGCAAAGGAAGGATTGGGCGTGGgCGCCCAGGAGCCTCTCAGATCCGC...GTTTGTTCCGCCTCCGCCGGGTGTTTTCTTGAGTACTTTCATCCGCTGTGCTCCTCTCTTGAAAAGCTTGGAAAGCAACCTTTGGGAGTTTTTTTCTTTCCGAAAGGAAAAGGATTTCTGCCCTTCTGGTGAGGTTGGCTCTGGCCCCGCATTCTCCCGCGTCTGGAACCTATCTCTTCCGGCATGTTCCTG|AAACCATGGAGGGCAGAAGAAAACAGAACAATTTTTTTTAATTGCTTAAAGAAAAGAGTTGTCAACCAGGATTTTGTACCCAGCAAAAATATCCTTCAGAAATGAAAGTGAAATAAACACATTCTCCAATTAAGGAAAATGAAGATAATCCATTGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2109 SEMA3A::LINC02476 ENSG00000075213.11::ENSG00000225546.6 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEMA3A ENSG00000075213.11 protein_coding - - chr7:83955777-84492724:- chr7:84194475:- chr7:83585093-84122040:- chr7:83823791:- LINC02476 ENSG00000225546.6 lncRNA - - chr7:119495024-119907397:- chr7:119500109:- chr7:119135078-119547451:- chr7:119140163:- chr7:84149515,chr7:84149517 chr7:119561010,chr7:119561009 NA NA chr7:83778831,chr7:83778833 chr7:119201064,chr7:119201063 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 1 0 46 1 ENST00000265362.9 ENST00000660268.1 upstream downstream duplicates(1) GTTAGTGTTGCCATGAGGTCTTGATTGTCTGCATTTATGAATGAAACTGACCTAAATCACCTGTTACCTCCAGTTTCCAGATTGTTTGAACTTCTCTGGCC...GGAGTATTACTTACAGCAAGAGCAAACTATCAGAATGGGAAGAACAATGTGCCAAGGCTGAAATTATCCTACAAAG|GAATCCATTATTGTTTGCATTATCATTGACGACTGTGAGAATCTGCAGAAAAAAACAGTATGGAACTACAACTTCACGTTCTTGAGAAAAGCTTGCAGTGTAAGATGCGTTTGTTTGTGGTGCCTGAGGAAG GVLLTARANYQNGKNNVPRLKLSYK|gihyclhyh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2117 SPON1::RRAS2 ENSG00000262655.4::ENSG00000133818.14 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPON1 ENSG00000262655.4 protein_coding + + chr11:13962723-14268133:+ chr11:14041654:+ chr11:13984270-14289679:+ chr11:14063201:+ RRAS2 ENSG00000133818.14 protein_coding - + chr11:14277922-14364506:- chr11:14347543:+ chr11:14299468-14386052:- chr11:14369089:+ chr11:14071720,chr11:14071718 chr11:14312174,chr11:14312169 NA NA chr11:14093267,chr11:14093265 chr11:14333720,chr11:14333715 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Reeler_domain(90%)| Reeler(69%)| 12 25 15 2143 107 ENST00000576479.4 unknown downstream upstream duplicates(17),low_entropy(4),mismappers(21),mismatches(13) TCAGAGAGAACAGAGAGGGTGATAAGGAAGAAGACCATGCTGGGACCTTCCAG___ATCATAGACGAAGAAGAAACTCAGTTTATGAGCAATTGCCCTGTTGCAGTCACTGAAAGCACTCCACGGAGGAGGACCCGGATCCAGGTGTTTTGGATAGCACCACCAGCGGGAACAGGCTGCGTGATTCTGAA|GGACAGATGGCTCACACCTGTAATCCCAGCGCTTTGGGAGGCCAAGACAGGAGGATCACTTGAGGCCAGAAGTTCAAGACCAGCCTGGGCAACATAGCGAGACCTCGTCGCTACAAAAAATCAAAAACTTAGGTACAGTGGCTCACACCTGTAGTGCCCGCGCTTTGGCAGGCAGAGGCAGGAAGATCATTTCAGCCCAGGAGTTCCGAGGGTGCAGTGACCTGTCATCACACCACTACACTACAG RENREGDKEEDHAGTFQIIDEEETQFMSNCPVAVTESTPRRRTRIQVFWIAPPAGTGCVILk|drwltpvipalweaktggslearssrpawat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2119 CDK13::SUGCT ENSG00000065883.18::ENSG00000175600.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE TRUE 191 FALSE NA FALSE NA CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:40047877:+ chr7:39989720-40139179:+ chr7:40087476:+ SUGCT ENSG00000175600.16 protein_coding + + chr7:40135005-40860763:+ chr7:40274513:+ chr7:40174604-40900362:+ chr7:40314112:+ chr7:40054136,chr7:40054137 chr7:40261315,chr7:40261313 NA NA chr7:40093735,chr7:40093736 chr7:40300914,chr7:40300912 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Protein_kinase_domain(50%)|CoA-transferase_family_III(59%) ABC1(11%),Haspin_kinase(76%),PK_Tyr_Ser-Thr(61%),Pkinase(61%)|CoA_transf_3(86%) 5 4 7 232 19 ENST00000181839.10 ENST00000335693.9 downstream upstream duplicates(7) GGGGAAAACGCTGCGTGGATAAATTTGATATCATCGGAATTATTGGAGAAGGTACTTACGGACAAGTTTACAAAGCCAGGGATAAAGACACTG___GAGAAATG...CCGGCAGCTTACCCATCAGAGTATTATCAATATGAAGGAAATAGTGACTGATAAAGAAGATGCTTTGGATTTCAAGAAGGACAAAG___GTGCATTTTATCTGGTGTTTGA...ATCTGATGGGACTACTGGAATCAGGCTTGGTTCATTTTAATGAAAATCACATAAAGTCATTTATGAGACAGCTCATGGAGGGTCTGGATTATTGTCATAAGAAGAACTTTTTGCATAGAGATATTAAATGTTCCAATATCCTTCTAAATAATAG___AGGGCAGATAAAACTTGCAGACTTTGGACTTGCTCGATTGTATAGCTCAGAAGAAAG|AATGGAGATCCAGTTCGCCCAGGAGTAGCTATGACTGATCTTGCCACTGGCCTGTATGCATATGGAGCTATTATGGCTGGATTGATACAAAAATACAAAACTGGGAAAGGACTGTTCATTGATTGTAACCTACTGTCATCCCAG___GTGGCGTGTTTGTCTCACATAGCTGCAAATTATCTTATTGGTCAAAAGGAAGCAAAACGTTGGGGTACAGCTCATGGCAGTATC?TTCCTTACCAG___GCTTTTAAAACCAAGGATGGCTATATTGTAGTTGGAGCAGGAAATAAC LMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEEr|meiqfaqe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2123 TULP4::TMEM181 ENSG00000130338.13::ENSG00000146433.10 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 344 TRUE 135 TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158314268:+ chr6:158653268-158932860:+ chr6:158735300:+ TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158573420:+ chr6:158957468-159056461:+ chr6:158994452:+ chr6:158344758,chr6:158344758,chr6:158344759 chr6:158555698,chr6:158555691,chr6:158555689 NA NA chr6:158765790,chr6:158765790,chr6:158765791 chr6:158976730,chr6:158976723,chr6:158976721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Wnt-binding_factor_required_for_Wnt_secretion(100%) |MIG-14_Wnt-bd(100%) 1 2 7 56 88 ENST00000367097.8 ENST00000367090.4 downstream upstream duplicates(2) CAAAAACACATATACCAATGAAAGAAATTGGTTTAAATTTCACAGCATTAACATTACTTTTTAAGTAAAACAGTTCATTGAAGAAAGTATcTATGCAGCAGTGGAACATGGGCCTGTGCTTTGCAGtGAcTCCAACATCCTGTGCCTGTCCTGGAAGGGGCGTGTCCCCAAGAGTGAGAAGGAGAAGCCTGTGTGCAGGAGACGCTACTATGAGGAAGGCTGGCTGGCCACGGGCAACGGGCGAGGAGTGGTTGGGGTGACTTTCACCTCTAGTCACTGTCGCAGGGACAGGAGTACTCCACAGAGGATAAATTTCAACCTCCGGGGCCACAATAGCGAG|GCTGGCGCCCATGCGGCTCTACACGCTCTCCAAGCGCCACTTTGTCCTCGTGTTTGTCGTCTTCTTCATCTGCTTTGGCCTGACCATCTTCGTTGGGATCAGAG___GACCTAAAGTGATCCAGACTTCTGCGGCTAATTTTTCACTAAATAATAGCAAAAAG iYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSE|agahaalhalqaplcprvcrllhllwpdhlrwdqrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7161 chr6:158609707-158609790:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2124 TULP4::TMEM181 ENSG00000130338.13::ENSG00000146433.10 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 344 TRUE 135 TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158314268:+ chr6:158653268-158932860:+ chr6:158735300:+ TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158580940:+ chr6:158957468-159056461:+ chr6:159001972:+ chr6:158344758,chr6:158344758,chr6:158344759 chr6:158555698,chr6:158555691,chr6:158555689 NA NA chr6:158765790,chr6:158765790,chr6:158765791 chr6:158976730,chr6:158976723,chr6:158976721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Wnt-binding_factor_required_for_Wnt_secretion(100%) |MIG-14_Wnt-bd(100%) 0 1 6 56 161 ENST00000367097.8 ENST00000367090.4 downstream upstream duplicates(1) ATGCAGCAGTGGAACATGGGCCTGTGCTTTGCAGtGAcTCCAACATCCTGTGCCTGTCCTGGAAGGGGCGTGTCCCCAAGAGTGAGAAGGAGAAGCCTGTGTGCAGGAGACGCTACTATGAGGAAGGCTGGCTGGCCACGGGCAACGGGCGAGGAGTGGTTGGGGTGACTTTCACCTCTAGTCACTGTCGCAGGGACAGGAGTACTCCACAGAGGATAAATTTCAACCTCCGGGGCCACAATAGCGAG|GACCTAAAGTGATCCAGACTTCTGCGGCTAATTTTTCACTAAATAATAGCAAAAAG___CTAAAGCCAATTCAAATACTTTCAAATCCACTGTCTACATACAATCAGCAACTATGGCTGACATGTGTTGTTGAGTTGGATCAATCAAAAG___AAAC AAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSE|dlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7161 chr6:158609707-158609790:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2125 TULP4::TMEM181 ENSG00000130338.13::ENSG00000146433.10 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 344 TRUE 135 TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158314268:+ chr6:158653268-158932860:+ chr6:158735300:+ TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158585304:+ chr6:158957468-159056461:+ chr6:159006336:+ chr6:158344758,chr6:158344758,chr6:158344759 chr6:158555698,chr6:158555691,chr6:158555689 NA NA chr6:158765790,chr6:158765790,chr6:158765791 chr6:158976730,chr6:158976723,chr6:158976721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Wnt-binding_factor_required_for_Wnt_secretion(100%) |MIG-14_Wnt-bd(100%) 2 0 2 56 175 ENST00000367097.8 ENST00000367090.4 downstream upstream none ATAAAATACTGACCTTCTAATTAGATTCAGGTCAGTCTTAATTAAAGGGGGAAAAAAGCAACGCAAGCCAACCACAAAAACACATATACCAATGAAAGAAA...CGTGTCCCCAAGAGTGAGAAGGAGAAGCCTGTGTGCAGGAGACGCTACTATGAGGAAGGCTGGCTGGCCACGGGCAACGGGCGAGGAGTGGTTGGGGTGACTTTCACCTCTAGTCACTGTCGCAGGGACAGGAGTACTCCACAGAGGATAAATTTCAACCTCCGGGGCCACAATAGCGAG|AAACTTCTATTAAGACAAGCTTTCCCATGACTGTTAAAGTCGAT...CCACGATGTtCATTCATAACAAAGTTCACAACCGGACAAGGtCCCTCACATGTGCAGGG RVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSE|klllrqafp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7161 chr6:158609707-158609790:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2126 TULP4::TMEM181 ENSG00000130338.13::ENSG00000146433.10 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 344 TRUE 135 TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158232303:+ chr6:158653268-158932860:+ chr6:158653335:+ TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158573420:+ chr6:158957468-159056461:+ chr6:158994452:+ chr6:158344758,chr6:158344758,chr6:158344759 chr6:158555698,chr6:158555691,chr6:158555689 NA NA chr6:158765790,chr6:158765790,chr6:158765791 chr6:158976730,chr6:158976723,chr6:158976721 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Wnt-binding_factor_required_for_Wnt_secretion(100%) |MIG-14_Wnt-bd(100%) 1 1 0 48 88 ENST00000620026.1 ENST00000367090.4 downstream upstream none GCGGCGGCGGCGATGCGGGGCTGCTGGAGGCGGAGAGGCACGGAGGAGCCGCTGGGGCTGCCGCCACGGCCGCCCGGAG|GCTGGCGCCCATGCGGCTCTACACGCTCTCCAAGCGCCACTTTGTCCTCGTGTTTGTCGTCTTCTTCATCTGCTTTGGCCTGACCATCTTCGTTGGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-7161 chr6:158609707-158609790:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2128 MEX3C::ENSG00000267699 ENSG00000176624.12::ENSG00000267699.2 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEX3C ENSG00000176624.12 protein_coding - - chr18:51174550-51218333:- chr18:51196567:- chr18:48700920-48744703:- chr18:48722937:- ENSG00000267699 ENSG00000267699.2 protein_coding + - chr18:50968019-51058144:+ chr18:50988812:- chr18:48494389-48584514:+ chr18:48515182:- chr18:51182900,chr18:51182905 chr18:51027087,chr18:51027089 NA NA chr18:48709270,chr18:48709275 chr18:48553457,chr18:48553459 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none KH_domain(15%)| KH_1(0%)| 1 2 6 181 37 ENST00000406189.4 unknown upstream downstream duplicates(6),mismappers(1),mismatches(2) GGTCTGTGCTGCTGCCAGCCGCCAGGTTCGATGCCCGGGAGGCGGCGGCCGCGGCGGCGGCGGCGGGGGTGCTGTACGGAGGGGACGATGCCCAGGGCATGATGGCGGCGATGCTGTCCCACGCCTACGGCCCCGGCGGTTGTGGGGCGGCGGCGGCCGCCCTGAACGGGGAGCAGGCGGCCCTGCTCCGGAGAAAGAGCGTCAACACCACCGAGTGCGTCCCGGTGCCCAGCTCCGAGCACGTCGCCGAGATCGTCGGCCGCCAGG|GCTGGTCTGGAACTCCTGGGCTCAAGCAATCCGCCTGCCTTGGCCTCCAAATGCTGGGATTACAGGCATGAGCCACTGCCCCCAGCCAATCATCACTACTTTGGAGTCTCCACAACTAGCCAGGAGTCAAAAAATTTGGCCAGAGAAG...GAGAAAGGGGTTCAACAGAGCTGACAGGCCTCTGTACTGCAGGATTTCTCAACACCTTCAAGCAATGTGCTATGCTCCTTATATATGTTGTCTTGTTTAAC SVLLPAARFDAREAAAAAAAAGVLYGGDDAQGMMAAMLSHAYGPGGCGAAAAALNGEQAALLRRKSVNTTECVPVPSSEHVAEIVGRQ|gwsgtpglkqsaclglqmlglqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2129 HADHB::ADGRF3 ENSG00000138029.14::ENSG00000173567.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HADHB ENSG00000138029.14 protein_coding + + chr2:26243170-26290465:+ chr2:26263479:+ chr2:26466038-26513333:+ chr2:26486347:+ ADGRF3 ENSG00000173567.16 protein_coding - + chr2:26308173-26346817:- chr2:26340401:+ chr2:26531041-26569685:- chr2:26563269:+ chr2:26266520 chr2:26312859 NA NA chr2:26489388 chr2:26535727 NA NA sense antisense out-of-frame CDS/splice-site exon deletion/read-through/5'-5' medium none Thiolase__N-terminal_domain(6%)| Thiolase_N(0%)| 3 2 3 538 12 ENST00000537713.5 unknown downstream upstream duplicates(2),low_entropy(1) CTGAACCTTGCTCCGAGAGGGAGTCCTCGCGGACGTCAGCCAAG___ATTCCAGAATGACTA[cta]TCTTGACTTACCCCTTTAAAAATCTTCCCACTGCATCAAAATGGG...CTCTGAGCTGTTCCTCCCAGCTACGAGCTGCCCCAG___CTGTCCAGACCAAAACGAAGAAGACGTTAGCCAAACCCAATATAAGGAATGTTGTGGTGGTGGATGGTGTTCGCACTCCATTTTTGCTGTCTGGCACTTC|TGACTTTCTCTTTCACCAAAACCGAATGACCATTGATCCAATAATCTCAAAGTTTCATGAAGaTGAAAATAATCCTCATTCAAAAATGAAGGCCCTTGCACAGCTGTGTGTTCAAACTGAAATTAAAAAAGAACAGTGGTTACATTTGGTcGCATCTGCATACCTGACATTAGATGAGA LSCSSQLRAAPAVQTKTKKTLAKPNIRNVVVVDGVRTPFLLSGTs|dflfhqnrmtidpiiskfhedennphskmkalaqlcvqteikkeqwlhlvasayltlde NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2135 HADHB::SELENOI ENSG00000138029.14::ENSG00000138018.19 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 346 TRUE 136 HADHB ENSG00000138029.14 protein_coding + + chr2:26243170-26290465:+ chr2:26263479:+ chr2:26466038-26513333:+ chr2:26486347:+ SELENOI ENSG00000138018.19 protein_coding + + chr2:26308547-26395885:+ chr2:26364302:+ chr2:26531415-26618753:+ chr2:26587170:+ chr2:26266520 chr2:26312859 NA NA chr2:26489388 chr2:26535727 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Thiolase__N-terminal_domain(6%)|CDP-alcohol_phosphatidyltransferase(100%) Thiolase_N(0%)|CDP-OH_P_transf(100%) 0 3 1 538 335 ENST00000537713.5 ENST00000260585.12 downstream upstream duplicates(2),low_entropy(1),mismappers(1) CAGAGCCTTGGTACTTGGACCTGAACCTTGCTCCGAGAGGGAGTCCTCGCGGACGTCAGCCAAG___ATTCCAGAATGACTA[cta]TCTTGACTTACCCCTTTAA...CTACGAGCTGCCCCAG___CTGTCCAGACCAAAACGAAGAAGACGTTAGCCAAACCCAATATAAGGAATGTTGTGGTGGTGGATGGTGTTCGCACTCCATTTTTGCTGTCTGGCACTTC|TACAGTGCTGTGGATACCAATCCACTTTCTCTGTATGTCATGCATCCATTCTGGAACACTATAGTAAAG___GTATTTCCTACTTGGCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTGGTCGTATTCAATTTTCTGCTAATGGCATACTTTGATCCTGACTTTTAT...ATTCTAGCACTCCCTTAGGGGAGCTTTTTGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTGACTGTTTATTCCATCTTTGGAAGAGGATCA LRAAPAVQTKTKKTLAKPNIRNVVVVDGVRTPFLLSGTs|tvlwipihflcmscihsgtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2136 HADHB::SELENOI ENSG00000138029.14::ENSG00000138018.19 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 346 TRUE 136 HADHB ENSG00000138029.14 protein_coding + + chr2:26243170-26290465:+ chr2:26254474:+ chr2:26466038-26513333:+ chr2:26477342:+ SELENOI ENSG00000138018.19 protein_coding + + chr2:26308547-26395885:+ chr2:26364302:+ chr2:26531415-26618753:+ chr2:26587170:+ chr2:26266520 chr2:26312859 NA NA chr2:26489388 chr2:26535727 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |CDP-alcohol_phosphatidyltransferase(100%) |CDP-OH_P_transf(100%) 1 0 0 484 335 ENST00000537713.5 ENST00000260585.12 downstream upstream none CTTGCTCCGAGAGGGAGTCCTCGCGGACGTCAGCCAAG___ATTCCAGAATGACTA[cta]TCTTGACTTACCCCTTTAAAAATCTTCCCACTGCATCAAAATGGGCCCTCAGATTTT___CCATAAGACCTCTGAGCTGTTCCTCCCAGCTACGAGCTGCCCCAG|TACAGTGCTGTGGAT MTtILTYPFKNLPTASKWALRFSIRPLSCSSQLRAAP|vqccg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2137 ARNT::TGFBR3 ENSG00000143437.21::ENSG00000069702.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARNT ENSG00000143437.21 protein_coding - - chr1:150809713-150876708:- chr1:150846263:- chr1:150782189-150849184:- chr1:150818739:- TGFBR3 ENSG00000069702.11 protein_coding - + chr1:91680343-91906335:- chr1:91734867:+ chr1:92145900-92371892:- chr1:92200424:+ chr1:150844405,chr1:150844407 chr1:91704747,chr1:91704745 NA NA chr1:150816881,chr1:150816883 chr1:92170304,chr1:92170302 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/5'-5' medium none Helix-loop-helix_DNA-binding_domain(1%)| HLH(0%)| 0 3 0 326 20 ENST00000358595.10 unknown upstream upstream none CAGATGTCTAACGATAAGGAGCGGTTTGCCAG|ATGTTCATTTCCATGGGGGAAGTTCCTTTCTTCTGTTTCTGCTGTCAAGGAGAAGTTTGCTGATGAAAACTGGACCACAGAACCCTCAGACACCTAGAGGAAAGAGAATTGCGTATTTAACATGGTGCAGTCACCGGAGCTGAATCATAATTAGAGAAAGTACTTCTCAgATCGAAGTGCTTGTAAATCGAACCTCTTCCCTTcGTTATACAAGCAGATCAGCGTTTTTAAGC QMSNDKERFAr|csfpwgkflssvsavkekfadenwttepsdt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE aryl hydrocarbon receptor nuclear translocator 1 Yes AML leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 2140 EIF2AK2::MYLK ENSG00000055332.19::ENSG00000065534.20 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIF2AK2 ENSG00000055332.19 protein_coding - - chr2:37099210-37157522:- chr2:37126289:- chr2:37326353-37384665:- chr2:37353432:- MYLK ENSG00000065534.20 protein_coding - + chr3:123610049-123884332:- chr3:123873212:+ chr3:123328896-123603179:- chr3:123592059:+ chr2:37123878,chr2:37123881 chr3:123873205,chr3:123873202 NA NA chr2:37351021,chr2:37351024 chr3:123592052,chr3:123592049 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Double-stranded_RNA_binding_motif(100%),Protein_kinase_domain(15%)| Pkinase(32%),dsrm(100%)| 1 2 0 508 6 ENST00000681507.1 unknown upstream upstream none AAGAAATAGAATTAATTGGCTCAGGTGGATTTGGCCAAGTTTTCAAAGCAAAACACAGAATTGACGGAAAGACTTACGTTATTAAACGTGTTAAATATAATAACGA|ATCCaTAAAAAGCGCCTGAACAAATCATTATTCATTCACGGTAAAGACAAAGAAAATCTAAGCAAATTAAAAGGAAACTTCCTC...ATATCATACAAGgTGATAGAAGACTCAACACCTGCCTCCTAAGATTGGAAACAAGGCAATGATGTCTGTTTTCACCACTCCTGTTTAACATTATACTGGAAATCTTAACCAGC EIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNe|siksa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Interferon-induced Other PEK P19525 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2170 TPRG1::LINC01322 ENSG00000188001.10::ENSG00000244128.9 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189023946:+ chr3:188665003-189043093:+ chr3:188741735:+ LINC01322 ENSG00000244128.9 lncRNA + + chr3:165206929-165846519:+ chr3:165580859:+ chr3:164924717-165564307:+ chr3:165298647:+ chr3:189039932,chr3:189039932,chr3:189039827 chr3:165561098,chr3:165561095,chr3:165561016 NA NA chr3:188757721,chr3:188757721,chr3:188757616 chr3:165278886,chr3:165278883,chr3:165278804 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 1 74 10 ENST00000433971.5 ENST00000651449.1 downstream upstream none AAAGATGGCAGCCTGCCCTTTCCTCTGGGAGTTCCATCCTAGGGGTGTACAGAACTGTTGCTGGCCTGAATACACCTGCATGAGGTGGCTGAAGACTCCAGTTG|ATAAGGGGTTTCACCTTGTTGCCCAAGCTGGTCTTGAAGTTCTGGGCTCAAGCGATCTGCCTGCATTAGCCTCCTAAAGTTCTGGGATTACCAACATGAGCTACCATGCCTGGGTCAAAGCCATTCTCTGAGCTGAAGAAAAACTACAAAAGATAGAAACTCAGATGTGCAGGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2174 SNRPD1::CABLES1 ENSG00000167088.11::ENSG00000134508.13 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 351 TRUE 137 SNRPD1 ENSG00000167088.11 protein_coding + + chr18:21612314-21633524:+ chr18:21612443:+ chr18:19192275-19213485:+ chr18:19192404:+ CABLES1 ENSG00000134508.13 protein_coding + - chr18:23134564-23260470:+ chr18:23154480:- chr18:20714528-20840434:+ chr18:20734444:- chr18:21621339,chr18:21621338 chr18:23160520,chr18:23160521 NA NA chr18:19201300,chr18:19201299 chr18:20740484,chr18:20740485 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none LSM_domain_(1%)| LSM(0%)| 73 184 41 2090 389 ENST00000300413.10 unknown downstream downstream duplicates(42),inconsistently_clipped(10),low_entropy(2),mismatches(30) CTGGAGTAGGCGCTTCCGGCCATTCATACTGCAGTCGGTCAGTGTTCGGTTGAAGGATTCTGTGTGCTGTCGGACCCAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAG|ATGATAACAAAGGCTCAAGAAGATTAAGGAATCGGCAGATGTGGGATGTGCAATTTCCCTATGGCTCGGTAGATGATCAAGTTAAACAGGCACGCTATTATGAAAAACCACCAATAAAATGGGAGAAAGACATAACTGCTGCTGTATGTGGAGACTGCACCTCAGCCTTAATTTGACTTGCCGA MKLVr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2175 SNRPD1::CABLES1 ENSG00000167088.11::ENSG00000134508.13 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 351 TRUE 137 SNRPD1 ENSG00000167088.11 protein_coding + + chr18:21612314-21633524:+ chr18:21612443:+ chr18:19192275-19213485:+ chr18:19192404:+ CABLES1 ENSG00000134508.13 protein_coding + + chr18:23134564-23260470:+ chr18:23188838:+ chr18:20714528-20840434:+ chr18:20768802:+ chr18:21621339,chr18:21621339,chr18:21621339 chr18:23160503,chr18:23160492,chr18:23160464 NA NA chr18:19201300,chr18:19201300,chr18:19201300 chr18:20740467,chr18:20740456,chr18:20740428 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none LSM_domain_(1%)|Cyclin__N-terminal_domain(100%) LSM(0%)|Cyclin_N(100%) 1 4 0 2090 119 ENST00000300413.10 ENST00000256925.12 downstream upstream none CTGCAGTCGGTCAGTGTTCGGTTGAAGGATTCTGTGTGCTGTCGGACCCAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAG|ACGGCGCCTCATCTCCCAGAGATCTTCCTTGGAGACCCTGGAAGATATTGAGGAGAACGCCCCcCcCC?GAG___ATGTCGAACTCTCTCAGGTTCACCCAGACCAAAGAATTTTAAGAAGATTCATTTTATCAAGAACATGCGGCAACACGATACCAGGAATGGCAG___TCCTTATCAGTG...ATCAACTGGTGCAGTGAGTTTGAAAGAGATCATTGGTCTGGAAGGTGTGGAGCTGGGTGCTGATGGGAAG___ACTGTTTCCTATACCCAATTTCTGTTACCC MKLVr|RRLISQRSSLETLEDIEENAPp?RCRTLSGSPRPKNFKKIHFIKNMRQHDTRNGspyq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2176 PSMD3::STRADA ENSG00000108344.15::ENSG00000266173.7 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSMD3 ENSG00000108344.15 protein_coding + + chr17:39980807-39997959:+ chr17:39981190:+ chr17:38137060-38154212:+ chr17:38137443:+ STRADA ENSG00000266173.7 protein_coding - + chr17:63682336-63741986:- chr17:63725854:+ chr17:61759696-61819346:- chr17:61803214:+ chr17:39982341,chr17:39982339,chr17:39982336 chr17:63723307,chr17:63723305,chr17:63723305 NA NA chr17:38138594,chr17:38138592,chr17:38138589 chr17:61800667,chr17:61800665,chr17:61800665 NA NA sense antisense out-of-frame CDS/splice-site exon deletion/5'-5' high none none none 71 118 29 7935 1092 ENST00000264639.9 unknown downstream upstream duplicates(68),inconsistently_clipped(2),mismappers(171),mismatches(110) GCTCCTGGTCCCCGGTGCGAGGGTTAACGCGAGGCCCCGGCCTCGGTCCCCGGACTAGGCCGTGACCCCGGGTGCCATGAAGCAGGAGGGCTCGGCGCGGCGCCGCGGCGCGGACAAGGCGAAACCGCCGCCCGGCGGAGGAGAACAAGAACCCCCACCGCCGCCGGCCCCCCAGGATGTGGAGATGAAAGAGGAGGCAGCGACGGGTGGCGGGTCGACGGGGGAGGCAGACGGCAAGACGGCGGCGGCAGCGGCTGAGCACTCCCAGCGAGAGCTGGACACAGTCACCTTGGAGG|TAGAGACGGAGTTTCACCATGTTAGCCAAGATGGTCTCGATCTCCTGATCTCGTAATCTGCCCACCTCGGCCTCCCAATGTGCTGtGcTgAC MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLE|vetefhhvsqdgldllis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2179 ADNP::DOK5 ENSG00000101126.18::ENSG00000101134.12 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADNP ENSG00000101126.18 protein_coding - - chr20:50888916-50931437:- chr20:50928651:- chr20:49505453-49547974:- chr20:49545188:- DOK5 ENSG00000101134.12 protein_coding + - chr20:54475593-54651169:+ chr20:54512234:- chr20:53092132-53267708:+ chr20:53128773:- chr20:50921057,chr20:50921061,chr20:50921067,chr20:50920556 chr20:54514360,chr20:54514361,chr20:54514361,chr20:54514608 NA NA chr20:49537594,chr20:49537598,chr20:49537604,chr20:49537093 chr20:53130899,chr20:53130900,chr20:53130900,chr20:53131147 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 57 84 39 546 294 ENST00000673732.1 unknown upstream downstream duplicates(7),mismatches(8) CACAATGCGAAACCTAGGCCCCAGCTTTTACACCATGATGCGCAGGGTTGTACTTTTTGTACTGAACTGATAGGTGGCCTAGTGGTTATGCCCTGTACTACCATTTTGAGGATCTGGACTCCGTTTCCTGCCTTGCTCTTTGGACCACATTGTCAATTCACACCG|GTATATTTTGCAGAAAGAAAACTTTCAGGAAATAGGAAAAGAAAGGAAGCAGATGTCTCCACATTCATAG___GTAAACAGCACTCCACATTTCCTTGGTGAAGCCACCTCTGCTCTGTTGGTGTGTATAAGGTAGACACAGCCACAGGTTCAACAGAGAGCAAACTGAATGGCCTGACCCAATCCTCCTACCCCATCAT HNAKPRPQLLHHDAQGCTFCTELIGGLVVMPCTTILRIWTPFPALLFGPHCQFTP|vyfaerklsgnrkrkeadvstfigkqhstfpw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2184 PREX1::H1-9P ENSG00000124126.14::ENSG00000188662.8 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PREX1 ENSG00000124126.14 protein_coding - - chr20:48624252-48827999:- chr20:48745025:- chr20:47240790-47444536:- chr20:47361562:- H1-9P ENSG00000188662.8 transcribed_unitary_pseudogene - - chr17:50171428-50181255:- chr17:50172177:- chr17:48248789-48258616:- chr17:48249538:- chr20:48739604,chr20:48739604,chr20:48739606 chr17:50172967,chr17:50172966,chr17:50172966 NA NA chr20:47356141,chr20:47356141,chr20:47356143 chr17:48250328,chr17:48250327,chr17:48250327 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none RhoGEF_domain(46%)| RhoGEF(69%)| 28 25 20 1408 101 ENST00000371941.4 ENST00000504307.3 upstream downstream duplicates(3),mismatches(5),multimappers(1) GGCACCTTGCGCTTCTTGCAGTCG___GCATTCCTGCATCGCATCCGGCAGAACGTGGCCGACTCAGTGGAGAAGGGCCTCACGGAGGAGAATGTCAAG___GTCCTGTTCTCGAACATCGAAGACATCCTGGAAGTTCATAAGGATTTCTTGGCCGCCTTGGAGTATTGTTTACACCCGGAGCCGCAGTCTCAGCATGAACTTGGGAATGTTTTCTTAAAATTC|GTAAAGGTGAGGGCCGGAGCTCAAGAGGAAGCCTCAGCGAGGACCAGGAACCGGGACACACCTCAGCCATCCTGTGAGGGGCAGCCCAcTGGAGACTTCCAGCCGCCCTGGAGGTCCTTGCACCCAAGACACTTCACCTACCCCAGGGAGAGAAGCAGAAAGGCACTTCGCCACTGTCTCCATCAGTGCTGTTGAACTCAAATACTGCCATGGGTGGAGGCCA GTLRFLQSAFLHRIRQNVADSVEKGLTEENVKVLFSNIEDILEVHKDFLAALEYCLHPEPQSQHELGNVFLKF|vkvragaqeeasartrnrdtpqpscegqptgdfqppwrslhprhftyprersrkalrhclhqcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2192 MAST2::B4GALNT2 ENSG00000086015.23::ENSG00000167080.9 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAST2 ENSG00000086015.23 protein_coding + + chr1:45786987-46036122:+ chr1:45882395:+ chr1:46252659-46501794:+ chr1:46348067:+ B4GALNT2 ENSG00000167080.9 protein_coding + - chr17:49132460-49176840:+ chr17:49149140:- chr17:47209822-47254202:+ chr17:47226502:- chr1:45931951 chr17:49152663 NA NA chr1:46397623 chr17:47230025 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 14 2 12 616 76 ENST00000361297.7 unknown downstream downstream duplicates(2),mismappers(1),mismatches(2),multimappers(1) AAGCAGCTGCTCCCTTTGTCCAGCAGTGTACATAGCAGTGTGGGACAGGTGACTTGGCAGTCGTCAGGAGAAGCATCAAACCTGGTTCGAATGAGAAACCAGTCCCTTGGACAGTCTGCACCTTCTCTTACTGCTGGCCTG___AAGGAGTTGAGCCTTCCAAGAAGAGGCAGCTT|TTCTGGCCCCAGACCCTGCAGCCACCGAGATGTTGATGCCTAAGAAGAACGGGAATGCATTTATCAACTCCTTTTTTTTTTTTTTTGAGACAAGGTCTCGCTCTGTCGCCAGACTGGAATTCAGTGGC?CGATCTCGGCTTATTGCAACCTCCACCGCCCAGGTTCAGACGATTCTCCTGCCTCAGCCTCCCgAGTgGCTGGGACTACAG...TTTCTCCATGTTGGCCAGGATGGTCTTGATCTCTTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAgAGTGCCGGGATTgCAGGTGTGAGCTACCGCACCC KQLLPLSSSVHSSVGQVTWQSSGEASNLVRMRNQSLGQSAPSLTAGLKELSLPRRGSf|sgprpcshrdvda* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 2 AGC MAST Q6P0Q8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2193 MATN2::TMEM74 ENSG00000132561.14::ENSG00000164841.5 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97979008:+ chr8:98881068-99048952:+ chr8:98991236:+ TMEM74 ENSG00000164841.5 protein_coding - - chr8:108606850-108787594:- chr8:108608826:- chr8:109619079-109799823:- chr8:109621055:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(40%),von_Willebrand_factor_type_A_domain(49%)| EGF_CA(40%),FXa_inhibition(41%),VWA(12%),VWA_2(41%),cEGF(13%),hEGF(40%)| 14 3 10 220 15 ENST00000254898.7 ENST00000518838.1 downstream downstream duplicates(2) AGACGACTTGCAGAA___TCCAGGATCTGTGTGCCATGGAGGACCACAACTGTGAGCAGCTCTGTGTGAATGTGCCGGGCTCCTTCGTCTGCCAGTGCTACAGTGGCTACGCCCTGGCTGAGGATGGGAAGAGGTGTGTGG___CTGTGGACTACTGTGCCTCAGAAAACCACGGATGTGAACATGAGTGTGTAAATGCTGATGGCTCCTACCTTTGCCAGTGCCATGAAGGATTTGCTCTTAACCCAGATAAgAAAACGTGCACAA|TAATGTTTCAGTGAAGGATGTTTGATTCCAAGACCTCTGGAAAAGATTCTTTATCTACAGTTTCTAAGATGGCAG___ATTTGCAGAACTTAAAAGAATACTGTAAGATTGGGATTGATGCCACCTGAAAGTGAAGAGCCAAACTGAAAACGTCA TTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCT|imfq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2207 INTS4::NUP160 ENSG00000149262.19::ENSG00000030066.14 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 198 FALSE NA FALSE NA INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77901421:- chr11:77585464-77705761:- chr11:77612467:- NUP160 ENSG00000030066.14 protein_coding - - chr11:47778087-47848555:- chr11:47835809:- chr11:47799639-47870107:- chr11:47857361:- chr11:77899884,chr11:77899889 chr11:47836082,chr11:47836084 NA NA chr11:77610930,chr11:77610935 chr11:47857634,chr11:47857636 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none HEAT_repeat_associated_with_sister_chromatid_cohesion(100%),HEAT_repeats(100%)|Nucleoporin_Nup120/160(51%) Cohesin_HEAT(100%),HEAT_2(100%)|Nup160(64%) 3 7 2 132 189 ENST00000695303.1 ENST00000694866.1 upstream downstream mismatches(5) ATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGG|GAGCAAATGTGCCTAATGGTAGCTGACATGCTGGAGTATGTCCCTGTGAAGAAAGACCTTCGGCTTACTGCTGGAACTGGACACAAATTACGGCTTGCTTATTCCCCCACCATGGGACTCTACCTGGGGATATACATGCATGCACCAAAACGAGGACAG___TTCTGCATTTTCCAGTTGGTGAGCACTGAGAGTAATCGCTATAGTCTCGATCATATTTCTTCACTGTTCACTTCTCAG___GAGACACTGATTGACTTTGCCTTAACTTCCACGGATATCTGGGCCCTGTGGCATGATGCTGAGAACCAAACAGTAGTGAAATACATCAACTTTGAACA___TAATGTTGCAGGTCAGTGGA MYSGVENKQVVIIHHMRLQAKALQLIVTARTTRg|skca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2211 STK17A::ENSG00000254664 ENSG00000164543.7::ENSG00000254664.1 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK17A ENSG00000164543.7 protein_coding + + chr7:43582758-43650713:+ chr7:43608400:+ chr7:43622357-43690312:+ chr7:43647999:+ ENSG00000254664 ENSG00000254664.1 lncRNA - - chr11:45215815-45235292:- chr11:45216203:- chr11:45237366-45256843:- chr11:45237754:- chr7:43612933,chr7:43612931 chr11:45216621,chr11:45216620 NA NA chr7:43652532,chr7:43652530 chr11:45238172,chr11:45238171 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_kinase_domain(48%)| ABC1(52%),PK_Tyr_Ser-Thr(60%),Pkinase(60%)| 6 2 3 154 12 ENST00000648544.1 ENST00000527450.1 downstream downstream duplicates(1),mismatches(3) AATTTACATGAAGTTTATGAGACTGCATCAGAAATGATCTTAGTTCTGGAATA___TGCTGCTGGGGGTGAAATCTTTGACCAGTGTGTTGCAGACAGAGAAGAAGCCTTTAAAGAAAAAGATGTTCAAAGACTTATGCGACAGATTTTAGAAGGTGTTCACTTTTTACACACTCGTGATGTAGTTCATCTTGATTTGAAG|AATTTGGGACCTTTGGAGCAATCAAGGGGAAGGTGGTGGTGCTGCTGATGGCGGTGGAGAGCTCTGGACTAAACCTGTCATGATGATCCTGGATTGTTTTTATTCCAACCTCCCAGCTGACCTTGGGGACT NLHEVYETASEMILVLEYAAGGEIFDQCVADREEAFKEKDVQRLMRQILEGVHFLHTRDVVHLDLK|nlgpleqsrgrwwcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 17A CAMK DAPK Q9UEE5 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2212 MOB3B::TEK ENSG00000120162.10::ENSG00000120156.22 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MOB3B ENSG00000120162.10 protein_coding - - chr9:27325209-27529814:- chr9:27455133:- chr9:27325207-27529812:- chr9:27455131:- TEK ENSG00000120156.22 protein_coding + + chr9:27109141-27230174:+ chr9:27172616:+ chr9:27109139-27230172:+ chr9:27172614:+ chr9:27363364,chr9:27363374 chr9:27169510,chr9:27169500 NA NA chr9:27363362,chr9:27363372 chr9:27169508,chr9:27169498 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Mob1/phocein_family(60%)|Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%) Interferon(100%),Mob1_phocein(0%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),fn3(100%),hEGF(100%) 3 3 4 81 19 ENST00000262244.6 ENST00000615002.4 upstream upstream none CTTCAATCGGATCAACCTCATCTATGGCACCATCTGTGAGTTCTGCACCGAGCGGACCTGTCCTGTGATGTCAGGGGGCCCCAAATATGAGTATCGGTGGCAGGATGATCTCAAGTATAAGAAGCCAACAGCGCTGCCAGCTCCCCAGTACATGAACCTTCTTATGGATTGGATTGAGGTTCAGATCAACAACGAGGAAATATTTCCAACATGCGTGG|GATGTGAAGCCCAGAAGTGGGGACCTGAATGCAACCATCTCTGTACTGCTTGTATGAACAATGGTGTCTGCCATGAAGATACTGGAGAATGCATTTGCCCTCCTGGGTTTATGGGAAGGACGTGTGAGAAGG___CTTGTGAACTGCACACGTTTGGCAGAACTTGTAAAGAAAGGTGCAG FNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEEIFPTCV|gCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Angiopoietin-1 receptor TK Tie Q02763 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2219 CACNB1::FBXL20 ENSG00000067191.17::ENSG00000108306.13 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNB1 ENSG00000067191.17 protein_coding - - chr17:39173453-39197702:- chr17:39197412:- chr17:37329706-37353955:- chr17:37353665:- FBXL20 ENSG00000108306.13 protein_coding - + chr17:39252663-39402523:- chr17:39335826:+ chr17:37408916-37558776:- chr17:37492079:+ chr17:39197106,chr17:39196847,chr17:39197109 chr17:39335287,chr17:39335286,chr17:39335284 NA NA chr17:37353359,chr17:37353100,chr17:37353362 chr17:37491540,chr17:37491539,chr17:37491537 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 3 1 2 157 25 ENST00000394303.8 unknown upstream upstream none CGGGTGCTGGCTGCGCCGCGCTGCTTTCGGCTCCCACGGCCTCTCCCATGCGCTGAGGGAGCCCGGCTGGGCCGGGCCGGCGGCGGGAGGGGAGGCTCCTCTCCATGGTCCAGAAGACCAGCATGTCCCGGGGCCCTTACCCACCCTCCCAGGAGATCCCCATGGAGGTCTTCGACCCCAGCCCGCAG|GGAAGGAAGAGAATCAGTATAAAAGGGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCTAATACTTCGTGAGGCTAAGGGGAGAGAATTGCTTGAGGCCAGAAGTACAAAACCAGCCTGGTCAACAAAGTGAGTCCCCA MVQKTSMSRGPYPPSQEIPMEVFDPSPQ|grkrisikgetgwvqwlmpvililreakgrellearstkpawstk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2225 TRIP12::FBXO36 ENSG00000153827.15::ENSG00000153832.12 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIP12 ENSG00000153827.15 protein_coding - - chr2:229763837-229923239:- chr2:229858772:- chr2:230628553-230787955:- chr2:230723488:- FBXO36 ENSG00000153832.12 protein_coding + - chr2:229922302-230013119:+ chr2:229958788:- chr2:230787018-230877835:+ chr2:230823504:- chr2:229842749,chr2:229842757 chr2:229986700,chr2:229986705 NA NA chr2:230707465,chr2:230707473 chr2:230851416,chr2:230851421 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 2 0 205 11 ENST00000453485.2 unknown upstream downstream none CCAGGTGCCAGAGTGAAACAAGGAAAAGATCAGAACAAGGCCAGGCGTTCCCGTTCAGCGTCCAGTCCCAGCCCCAGAAGAAGTAGCAGGGAAAAGGAACAGA___GGTCTTCTAAGTCAGAGACATCAAAACCTGGACCTTCTGGATTACAGGCCAAATTAGCAA|GGCGAGAATGTAGTCATAGTTCCCTAAGCTTTATGGGAAGAAGCTCAGATCCACTCTTGCAGCGGGACACCGTGAGACATCACTCCCAA PGARVKQGKDQNKARRSRSASSPSPRRSSREKEQRSSKSETSKPGPSGLQAKLA|rrecshsslsfmgrssdpllqrdtvrhhs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2230 TAF2::DAB1 ENSG00000064313.13::ENSG00000173406.16 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119756006:- chr8:120743014-120845103:- chr8:120768246:- DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:57425125:- chr1:57460451-59012406:- chr1:57890797:- chr8:119754460,chr8:119754460,chr8:119754460,chr8:119754470 chr1:57472813,chr1:57472810,chr1:57472809,chr1:57472815 NA NA chr8:120766700,chr8:120766700,chr8:120766700,chr8:120766710 chr1:57938485,chr1:57938482,chr1:57938481,chr1:57938487 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |PID(100%) 2 2 0 302 2 ENST00000378164.7 unknown upstream downstream none GATTCAGAATGACCCTGTACCCTATGTAAG___GCATAAGATTCTCAACATGTTGACTAAGAACCCACCATTTACTAAGAACATGGAGTCTCCCTTATGCAATGAAGCCCTGGTAGATCAACTTTGGAAACTTATGAATTCTG|GCCTCTGGAGACAGGTATGCCACACAACAGGAATTTTCTGGAGTTGAATCTAGTCTCAAGGTGGAAGAATTTTCAGAATGACCCAATATTTTCTGCGACTTGGTGTTTCTAGGATCTTTGTGAGCTAGGACCCTAAGCAAGGAGCAACTGAC IQNDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNS|glwrqvchttgifws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2231 ZNF287::ENSG00000227885 ENSG00000141040.15::ENSG00000227885.4 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF287 ENSG00000141040.15 protein_coding - - chr17:16546954-16569204:- chr17:16563146:- chr17:16450268-16472518:- chr17:16466460:- ENSG00000227885 ENSG00000227885.4 lncRNA - + chr6:53739266-53794904:- chr6:53774013:+ chr6:53604064-53659702:- chr6:53638811:+ chr17:16559911 chr6:53772474 NA NA chr17:16463225 chr6:53637272 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none KRAB_box(100%),SCAN_domain(100%)| KRAB(100%),SCAN(100%)| 1 0 2 98 2 ENST00000395825.4 unknown upstream upstream none CTGGGAGTTAATGCGTCCTGTGCAGAAGGAATTATACAAGACTGTGACGTTACAGAACTATTGGAACATGGTTTCTCTGG___GACTTACAGTGTACAGACCAACTGTGATTCCCATATTGGAAGAACCATGGATGGTGATAAAAGAAATTTTAGAAGGCCCTAGgCaAG|CATGTCTCAGAAAGATTAAAACTGGTATCAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGG...TGAGCCGAAGCAGGGCGAGGCATTGCCTCACCCGGGTAGCGCAAGGGGTCAGGGAATTCCCTTTCCTAGTCAAAGAAAGTGGTGACTGATGGCACCTGGTA WELMRPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEILEGPrq|aclrkiktgirwpnrnssslqlpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2232 METTL25::TMTC2 ENSG00000127720.8::ENSG00000179104.9 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 366 TRUE 138 METTL25 ENSG00000127720.8 protein_coding + + chr12:82358528-82479239:+ chr12:82358916:+ chr12:82752307-82873018:+ chr12:82752695:+ TMTC2 ENSG00000179104.9 protein_coding + + chr12:82686880-83134870:+ chr12:83030798:+ chr12:83080659-83528649:+ chr12:83424577:+ chr12:82384335,chr12:82384329 chr12:82993699,chr12:82993690 NA NA chr12:82778114,chr12:82778108 chr12:83387478,chr12:83387469 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none |Tetratricopeptide_repeat(13%) |TPR_1(100%),TPR_16(30%),TPR_2(1%),TPR_8(0%) 0 2 1 6 25 ENST00000548569.5 ENST00000321196.8 downstream upstream none GTCGACTTGCCACCGGAGACAGTGCTGGCTGCGCTGAGGAAGTCAGCGTCGGAGACGGAGGCCCTGCCCTCAGAGACGCGCCCCC?A...CCGGCAGACGAAGCGAGCCCCCTGGTGGAAGCCAGCAGAACCAG|GGTCGTAAGAGTGAGGCTGAAAAGCTCTTCTTGAAGGCTATTGAGCTGGATCCCACCAAAGGAAACTGTTACATGCATTATG___GTCAGTTTCTTCTGGAAGAAGCTCGTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2233 METTL25::TMTC2 ENSG00000127720.8::ENSG00000179104.9 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 366 TRUE 138 METTL25 ENSG00000127720.8 protein_coding + + chr12:82358528-82479239:+ chr12:82358916:+ chr12:82752307-82873018:+ chr12:82752695:+ TMTC2 ENSG00000179104.9 protein_coding + + chr12:82686880-83134870:+ chr12:83050904:+ chr12:83080659-83528649:+ chr12:83444683:+ chr12:82384335,chr12:82384329 chr12:82993699,chr12:82993690 NA NA chr12:82778114,chr12:82778108 chr12:83387478,chr12:83387469 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion medium none |Tetratricopeptide_repeat(8%) |TPR_1(100%),TPR_16(30%),TPR_2(1%),TPR_8(0%) 0 1 1 6 17 ENST00000548569.5 ENST00000321196.8 downstream upstream none GTCGACTTGCCACCGGAGACAGTGCTGGCTGCGCTGAGGAAGTCAGCGTCGGAGACGGAGGCCCTGCCCTCAGAGACGCGCCCCC?A...GCGGcGGAGAAGGTCCCGGCAGACGAAGCGAGCCCCCTGGTGGcAGCCAGCAGAACCAG|GTCAGTTTCTTCTGGAAGAAGCTCGTCTCATAGAAGCAGCTGAGATGGCAAAAAAAGCAGCaGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2235 PRDM11::COA1 ENSG00000019485.14::ENSG00000106603.20 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRDM11 ENSG00000019485.14 protein_coding + + chr11:45095806-45235110:+ chr11:45204778:+ chr11:45117357-45256661:+ chr11:45226329:+ COA1 ENSG00000106603.20 protein_coding - - chr7:43608456-43729717:- chr7:43609641:- chr7:43648055-43769316:- chr7:43649240:- chr11:45216620,chr11:45216621 chr7:43612931,chr7:43612933 NA NA chr11:45238171,chr11:45238172 chr7:43652530,chr7:43652532 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none none |ABC1(57%),PK_Tyr_Ser-Thr(63%),Pkinase(63%) 1 2 0 39 85 ENST00000530656.5 ENST00000446330.6 downstream downstream none TGACACACCGGTGCCCGTGGGCATCCCAGACCGGGCGGCGCTCACCATCCCACAGGGCATGGAGGTGGTCAAGGACACTAGTGGAGAGAGTGACGTGCGAT...CTCAGACGAGACCAAAGCCAACTGGATGAG|TTGCACCTGGACTTGATATGAAAGTAACCATCAGAAAATCAACAGAGATCTTAAACTTGCCTACCACAGACACCT...TATTGTCTCCTGAGCACCCATTCTTTGTTCTTTCAGAAACACAACTGGTTTTGAGAATCCATCCCTTCTTCACTCAGTCCACGTAAAGGTTAGGATGGcAG...TCTACGCTGGTGTAATCAGAGTGAATCTCAGAACTTTGGACAGAGCTGTGAGCAGAGACTGACTTTCCTGCTGTCTCCAGGTAGCTGCAAGGCTGAACAGC SDETKANWMs|ctwt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2236 MAP2K4::ENSG00000230647 ENSG00000065559.15::ENSG00000230647.3 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP2K4 ENSG00000065559.15 protein_coding + + chr17:12020829-12143830:+ chr17:12095694:+ chr17:11924146-12047147:+ chr17:11999011:+ ENSG00000230647 ENSG00000230647.3 lncRNA + + chr17:14374139-14526498:+ chr17:14526185:+ chr17:14277456-14429815:+ chr17:14429502:+ chr17:12103306 chr17:14472932 NA NA chr17:12006623 chr17:14376249 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Protein_kinase_domain(25%)| PK_Tyr_Ser-Thr(23%),Pkinase(23%)| 2 1 0 269 2 ENST00000415385.7 ENST00000700765.1 downstream upstream mismatches(1) AAAGAACAAAAACAACTTCTTATGGATTTGGATGTAGTAATGCGGAGTAGTGATTGCCCATACATTGTTCAGTTTTATGGTGCACTCTTCAGAGAG|GTTTTTTGCATGTCTGACACCAATGGCTCCACCTGGACCCGATGGCTCCGCCTGGACCTGCCAAACTCCTCCTATGGTTCCACCCAGGAACAACTCAGC KEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE|vfcmsdtngstwtrwlrldlpnssygstqeql NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-744 chr17:12081899-12081996:+ FALSE NA NA FALSE NA NA TRUE FALSE Dual specificity mitogen-activated protein kinase kinase 4 STE STE7 P45985 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mitogen-activated protein kinase kinase 4 1 Yes pancreatic, breast, colorectal epithelial oncogene, TSG large_deletion, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 2260 NBN::MTBP ENSG00000104320.15::ENSG00000172167.8 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBN ENSG00000104320.15 protein_coding - - chr8:89924515-90003228:- chr8:89953244:- chr8:90936743-91015456:- chr8:90965472:- MTBP ENSG00000172167.8 protein_coding + - chr8:120445400-120542133:+ chr8:120520912:- chr8:121457640-121554373:+ chr8:121533152:- chr8:89953035,chr8:89953033,chr8:89953027,chr8:89953075,chr8:89953006,chr8:89953073,chr8:89953057,chr8:89953041,chr8:89953045 chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064,chr8:120521064 NA NA chr8:90965263,chr8:90965261,chr8:90965255,chr8:90965303,chr8:90965234,chr8:90965301,chr8:90965285,chr8:90965269,chr8:90965273 chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304,chr8:121533304 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none FHA_domain(100%),Second_BRCT_domain_on_Nijmegen_syndrome_breakage_protein(100%)| BRCT(100%),FHA(100%),NIBRIN_BRCT_II(100%),RTT107_BRCT_5(100%)| 10 3 1 1805 14 ENST00000697292.1 unknown upstream downstream mismatches(1) TTTACAGATACAGATTTAAAATCTATTGTGAAAAATTCTGCCAGTAAATCTCATGCTGCAGAAAAGCTAAGATCAAATAAAAAAAGGGAAATGGATGATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAGTTAGAAATTGATGTGAAAGTTCAAAAACAGGAGGAAGATGTCAATGTTAGAAAAAGGCCAAGGATGGATATAGAAACAAATGACACTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAATATCT|ATATTCCATGTTTGAATGTATCTTCATTAAATCCTCATACCTGACTGCATTCCAGACTGGGTATAGAATACTAGGTAAGTCACCTTCCCTCAG...TTTCTTTTTTCTTTTTTTAATTCTAGAAATGCACATCCCTCAGAATTTGAAGATACTTTTCTACTATCTTCTAGCATACAGTGTTACTGTGGAGAAGTCCAA FTDTDLKSIVKNSASKSHAAEKLRSNKKREMDDVAIEDEVLEQLFKDTKPELEIDVKVQKQEEDVNVRKRPRMDIETNDTFSDEAVPESSKIS|ifhv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nibrin 1 NHL, glioma, medulloblastoma, rhabdomyosarcoma Nijmegen breakage syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 2290 ZNF704::PVT1 ENSG00000164684.13::ENSG00000249859.14 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821374:- chr8:81540686-81787016:- chr8:81733609:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 2 0 0 1290 986 ENST00000327835.7 ENST00000651587.1 upstream upstream none GGAAGATGTGAAAACAGCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAtGCTTGGAGGCTGAGGAGTTCAC EDVKTADTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPAr|rte* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2297 IGF2BP1::PPM1E ENSG00000159217.10::ENSG00000175175.6 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGF2BP1 ENSG00000159217.10 protein_coding + + chr17:48997385-49056145:+ chr17:49026517:+ chr17:47074747-47133507:+ chr17:47103879:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58955649:+ chr17:56833215-57062540:+ chr17:57033010:+ chr17:49032469,chr17:49032472,chr17:49032473,chr17:49032484,chr17:49032490,chr17:49032494,chr17:49032424,chr17:49032427,chr17:49032433,chr17:49032434,chr17:49032440,chr17:49032450,chr17:49032464 chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991,chr17:58833991 NA NA chr17:47109831,chr17:47109834,chr17:47109835,chr17:47109846,chr17:47109852,chr17:47109856,chr17:47109786,chr17:47109789,chr17:47109795,chr17:47109796,chr17:47109802,chr17:47109812,chr17:47109826 chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352,chr17:56911352 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(71%)|Protein_phosphatase_2C(100%) RRM_1(10%),RRM_5(0%)|PP2C(100%) 1 0 0 26 3 ENST00000290341.8 ENST00000308249.4 downstream upstream none GGCCACCTCGGCTGTTCCCTCTGGAGGACAGAGCCCGACTCTGTCTcTTTTCAAG___GAGCCGGAAAATTCAAATCCGAAATATTCCACCCCAGCTCCGATGG...GTATGGTACAGTAGAGAACTGTGAGCAAG|TAATTGCCCTTCCTTTTTGGCTGCTGCTTTAGCCAGAGCCACATCAGATGAAGTCCTTCAGAGTGATCTTTC YGTVENCEQ|vialpfwlll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2298 ARHGEF7::PVT1 ENSG00000102606.20::ENSG00000249859.14 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ARHGEF7 ENSG00000102606.20 protein_coding + + chr13:111114559-111305737:+ chr13:111153991:+ chr13:111766906-111958084:+ chr13:111806338:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070160:+ chr8:128806772-129199347:+ chr8:129082406:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site translocation low none Calponin_homology_(CH)_domain(75%)| CH(42%)| 1 0 0 582 436 ENST00000491775.5 ENST00000651587.1 downstream upstream none CAGAGATTGGTGCAGCCCCGGAGGAAGAAAAAAGG___GTCTACCCCGAGCCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGGCTGCGGGGCTTCCCTGCGGCTGGAG|AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2304 PHACTR2::ENSG00000280148 ENSG00000112419.15::ENSG00000280148.1 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 379 TRUE 139 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143749065:+ chr6:143857982-144152322:+ chr6:144070202:+ ENSG00000280148 ENSG00000280148.1 protein_coding + + chr6:143857318-143938471:+ chr6:143937649:+ chr6:144178455-144259608:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through high none RPEL_repeat(33%)| RPEL(1%)| 19 24 34 103 80 ENST00000367584.8 ENST00000454207.2 downstream upstream duplicates(5),mismatches(1) ACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG___TATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGGAATTGCCTGATCAAG|GATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAACTCCTAGAAGCCAG___ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTTATTTACTCCCTTTGAAGTTTTC KASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQ|glamdpasgaklrqgfsksskkd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2305 PHACTR2::ENSG00000280148 ENSG00000112419.15::ENSG00000280148.1 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 379 TRUE 139 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143712183:+ chr6:143857982-144152322:+ chr6:144033320:+ ENSG00000280148 ENSG00000280148.1 protein_coding + + chr6:143857318-143938471:+ chr6:143937649:+ chr6:144178455-144259608:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none none 3 6 13 130 80 ENST00000367584.8 ENST00000454207.2 downstream upstream duplicates(2) CCCGCTCCGGGTCCACATCTCCGGCTCAG___TTGACGGACTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG|GATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAACTCCTAGAAGCCAG___ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTAC PLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSA|glamdpasgaklrqgfsksskkd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2306 PHACTR2::ENSG00000280148 ENSG00000112419.15::ENSG00000280148.1 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 379 TRUE 139 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143749065:+ chr6:143857982-144152322:+ chr6:144070202:+ ENSG00000280148 ENSG00000280148.1 protein_coding + + chr6:143857318-143938471:+ chr6:143938142:+ chr6:144178455-144259608:+ chr6:144259279:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none RPEL_repeat(33%)| RPEL(1%)| 0 1 18 103 100 ENST00000367584.8 ENST00000454207.2 downstream upstream duplicates(1),mismatches(1) GAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG___TATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGGAATTGCCTGATCAAG|ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTTATTTACTCCCTTTGAAGTTTTCAAAACAAAAGCATTAAACACATCAACCTGTATAATGCATGATTCAAATTCACTTGAAGTTTAATTGGACATTTG KLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQ|dclpethqpgwlrtrechlrgrngrcdvcfytldss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2307 PHACTR2::ENSG00000280148 ENSG00000112419.15::ENSG00000280148.1 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 379 TRUE 139 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143712183:+ chr6:143857982-144152322:+ chr6:144033320:+ ENSG00000280148 ENSG00000280148.1 protein_coding + + chr6:143857318-143938471:+ chr6:143938142:+ chr6:144178455-144259608:+ chr6:144259279:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none none 0 1 6 130 100 ENST00000367584.8 ENST00000454207.2 downstream upstream mismatches(1) CGTCGTCCTCGAGCAGGGGCCGCCCGCTCCGGGTCCACATCTCCGGCTCAG___TTGACGGACTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG|ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTTATTTACTCCCTTTGAAGTTTTCAAAACAAAAGCATTAAACACATCAACCTGTATAATGCATGATTCAAATTCACTTGAAGTTTAATTGGACATTTG...GAAAGAATAACAGAGAAGAGAG SSSSRGRPLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSA|dclpethqpgwlrtrechlrgrngrcdvcfytldss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2308 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 201 TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143749065:+ chr6:143857982-144152322:+ chr6:144070202:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143937649:+ chr6:144185573-144259480:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none RPEL_repeat(33%)| RPEL(1%)| 19 19 31 103 80 ENST00000367584.8 ENST00000237275.9 downstream upstream duplicates(5),mismatches(1) ACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG___TATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGGAATTGCCTGATCAAG|GATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAACTCCTAGAAGCCAG___ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTT KASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQ|gLAMDPASGAKLRQGFSKSSKKD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2309 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 202 TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143712183:+ chr6:143857982-144152322:+ chr6:144033320:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143937649:+ chr6:144185573-144259480:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 3 5 11 130 80 ENST00000367584.8 ENST00000237275.9 downstream upstream duplicates(2) CCCGCTCCGGGTCCACATCTCCGGCTCAG___TTGACGGACTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG|GATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAACTCCTAGAAGCCAG___ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTAC PLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSA|gLAMDPASGAKLRQGFSKSSKKD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2310 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143749065:+ chr6:143857982-144152322:+ chr6:144070202:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143938142:+ chr6:144185573-144259480:+ chr6:144259279:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none RPEL_repeat(33%)| RPEL(1%)| 0 1 15 103 100 ENST00000367584.8 ENST00000237275.9 downstream upstream duplicates(1),mismatches(1) GAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG___TATTAGAAAGGAAGATATCCACACGACAAAGTAGAGAGGAGCTGATAAGAAGGGGAGTGCTTAAGGAATTGCCTGATCAAG|ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTTATTTACTCCCTTTGAAGTTTTCAAAACAAAAGCATTAAA KLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQ|dclpethqpgwlrtrechlrgrngrcdvcfytldss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2311 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143712183:+ chr6:143857982-144152322:+ chr6:144033320:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143938142:+ chr6:144185573-144259480:+ chr6:144259279:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none none 0 1 4 130 100 ENST00000367584.8 ENST00000237275.9 downstream upstream mismatches(1) CGTCGTCCTCGAGCAGGGGCCGCCCGCTCCGGGTCCACATCTCCGGCTCAG___TTGACGGACTGGACAAAGCTTCTATAGCAAACTCAGATGGCCCCACAGCAGGTTCCCAAACACCTCCCTTCAAAAGAAAGGGGAAACTATCCACCATTGGTAAAATCTTTAAGCCTTGGAAATGGAGGAAAAAGAAGACCAGCGACAAATTTAGAGAAACCTCGGCAG|ACTGCCTCCCTGAAACCCATCAGCCTGGATGGTTGCGTACCCGAGAATGCCACCTAAGGGGAAGGAACGGTAGATGTGATGTCTGTTTTTACACCCTTGATTCTTCTTGAAGCATCACTTAGAACAAGTAAAACTTGCTTCAGATTTTTATTTACTCCCTTTGAAGTTTTCAAAACAAAAGCATTAAA...GAAAGAATAACAGAGAAGAGAG SSSSRGRPLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSA|dclpethqpgwlrtrechlrgrngrcdvcfytldss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2320 MTSS1::FER1L6 ENSG00000170873.19::ENSG00000214814.7 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124699526:- chr8:125563025-125740714:- chr8:125711767:- FER1L6 ENSG00000214814.7 protein_coding + - chr8:123851987-124120061:+ chr8:124010240:- chr8:124864227-125132302:+ chr8:125022480:- chr8:124626551,chr8:124626554 chr8:124027404,chr8:124027404 NA NA chr8:125638792,chr8:125638795 chr8:125039644,chr8:125039644 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none IRSp53/MIM_homology_domain(24%)| IMD(17%)| 9 6 17 161 24 ENST00000518547.6 unknown upstream downstream duplicates(3),mismappers(1),mismatches(1) GGAAAATGGAGGCTGTGATTGAGAAGGAATGCAGCGCGCTCGGAGGCCTCTTCCAGACCATCATCAGCGACATGAAG___GGGAGCTATCCAGTTTGGGAAGATTTCATAAACAAAGCAGGAAAGCTGCAGTCCCAGCTTCG___GACAACAGTAGTAGCAGCAGCTGCCTTCTTGGACGCCTTTCAGAAAGTGGCTGACATGGCCACCAACACACGTG|CTCCACGACCCTCAAACTAGAACAAGACCTCTCCTCCTCCCTGACTCGCCAGCTTCCGAACCCTTGAACTACAACGACATTGCTCCTGCCTGGATCTGCAGCTCCACGACCCTAAAACCAGAACAAGACCTCTCCTCCACGGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTGCTGCCTGGGTCTGCAGTTCCACGACCCTCAAACTAGAACAAGACC MEAVIEKECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTR|aprpsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2321 MTSS1::FER1L6-AS1 ENSG00000170873.19::ENSG00000181171.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 382 TRUE 141 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124699526:- chr8:125563025-125740714:- chr8:125711767:- FER1L6-AS1 ENSG00000181171.5 lncRNA - - chr8:123984138-124040782:- chr8:124010240:- chr8:124996378-125053023:- chr8:125022480:- chr8:124626551,chr8:124626554 chr8:124027404,chr8:124027404 NA NA chr8:125638792,chr8:125638795 chr8:125039644,chr8:125039644 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none IRSp53/MIM_homology_domain(24%)| IMD(17%)| 9 6 15 161 24 ENST00000518547.6 unknown upstream downstream duplicates(3) GGAAAATGGAGGCTGTGATTGAGAAGGAATGCAGCGCGCTCGGAGGCCTCTTCCAGACCATCATCAGCGACATGAAG___GGGAGCTATCCAGTTTGGGAAGATTTCATAAACAAAGCAGGAAAGCTGCAGTCCCAGCTTCG___GACAACAGTAGTAGCAGCAGCTGCCTTCTTGGACGCCTTTCAGAAAGTGGCTGACATGGCCACCAACACACGTG|CTCCACGACCCTCAAACTAGAACAAGACCTCTCCTCCTCCCTGACTCGCCAGCTTCCGAACCCTTGAACTACAACGACATTGCTCCTGCCTGGATCTGCAGCTCCACGACCCTAAAACCAGAACAAGACCTCTCCTCCACGGGTTGCCAGCTACCAGACCCTCGAATTACAACAACATTGCTGCTGCCTGGGTCTGCAGTTCCACGACCCTCAAACTAGAACAAGACC MEAVIEKECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTR|aprpsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2322 MTSS1::FER1L6-AS1 ENSG00000170873.19::ENSG00000181171.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 382 TRUE 141 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124699526:- chr8:125563025-125740714:- chr8:125711767:- FER1L6-AS1 ENSG00000181171.5 lncRNA - - chr8:123984138-124040782:- chr8:124004232:- chr8:124996378-125053023:- chr8:125016472:- chr8:124626551,chr8:124626554 chr8:124027404,chr8:124027404 NA NA chr8:125638792,chr8:125638795 chr8:125039644,chr8:125039644 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none IRSp53/MIM_homology_domain(24%)| IMD(17%)| 9 5 2 161 17 ENST00000518547.6 ENST00000518567.1 upstream downstream none CTGGTGCACCCCGTCCTCGCTGCAGAAGAGGCTGCGAGTCCGAGGTGGGTCTCTCGGAAGGTGAAATTCCTTCTGGGGTGAGCGAGCCCCGGCCCCGCGCGCAGTCCAGCGGCCCCGCGTGTGTGCCCTCGCCCTGCCGGAGCCGGGAAAATGGAGGCTGTGATTGAGAAGGAATGCAGCGCGCTCGGAGGCCTCTTCCAGACCATCATCAGCGACATGAAG___GGGAGCTATCCAGTTTGGGAAGATTTCATAAACAAAGCAGGAAAGCTGCAGTCCCAGCTTCG___GACAACAGTAGTAGCAGCAGCTGCCTTCTTGGACGCCTTTCAGAAAGTGGCTGACATGGCCACCAACACACGTG|GTTGAAACTTTGAATGGATTAAAGGAGATCAGTGAGAGTACAT MEAVIEKECSALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTR|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2324 ASH1L::RIT1 ENSG00000116539.14::ENSG00000143622.12 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 204 FALSE NA FALSE NA ASH1L ENSG00000116539.14 protein_coding - - chr1:155335268-155563162:- chr1:155360301:- chr1:155305059-155532953:- chr1:155330092:- RIT1 ENSG00000143622.12 protein_coding - - chr1:155897808-155911404:- chr1:155900618:- chr1:155867599-155881195:- chr1:155870409:- chr1:155357904,chr1:155357908 chr1:155904497,chr1:155904498 NA NA chr1:155327695,chr1:155327699 chr1:155874288,chr1:155874289 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none AWS_domain(100%),SET_domain(100%)|Ras_family(24%) AWS(100%),SET(100%)|Arf(0%),Ras(1%) 9 8 12 234 233 ENST00000677213.1 ENST00000368323.8 upstream downstream duplicates(1) GGCATGAATGGGTGCAATGTCTAGAACGATTTCGAGCTGAGGAAAAAGGTTGGGGAATCAGAACCAAAGAGCCCCTAAAAGCTGGGCAGTTCATCATTGAATACCTAGGGGAGGTCGTCAGTGAACAGGAGTTCAG___GAACAGGATGATTGAGCAGTATCATAATCACAGTGACCACTACTGCCTGAACCTGGATAGTGGGATGGTGATTGACAGTTACCGCATGGGAAATGAGGCCCGATTCATCAACCATAGCTGTGACCCAAATTGTGAAATGCAGAAATG___GTCTGTTAATGGAGTATACCGGATTGGACTCTATGCTCTTAAAGACATGCCAGCTGGGACTGAACTCACTTATGATTATAACTTTCATTCCTTCAATGTGGAAAAACAG|GTCACCAAGGAAGAAGGATTGGCCTTGGCCCGAGAATTCAGCTGTCCCTTTTTTGAGACATCTGCTGCATACCGCTACTATATTGATGATGTTTTCCATGCCCTTGTACGGGAGATACGTAGGAAAGAAAAGGAGGCAGTACTGGCCATGGAGAAAAAATCTAAGCCCAAAAACAGTGTATGGAAGAGGCTAAAATCACCATTCCGGAAGAAGAAAGATTCAGTAACTTGAAGAGAAGATGTGAAGTGTTTATCTGTGAACTGCAGTGCTGTATCAAAGCAGTCCAGT HEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQ|VTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRKEKEAVLAMEKKSKPKNSVWKRLKSPFRKKKDSVT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 155307880 FALSE 155874595 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2325 SCAMP5::SCAMP2 ENSG00000198794.12::ENSG00000140497.16 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCAMP5 ENSG00000198794.12 protein_coding + + chr15:74957219-75021495:+ chr15:75012805:+ chr15:75249560-75313836:+ chr15:75305146:+ SCAMP2 ENSG00000140497.16 protein_coding - + chr15:74843730-74873365:- chr15:74857079:+ chr15:75136071-75165706:- chr15:75149420:+ chr15:75015777,chr15:75015778 chr15:74851342,chr15:74851340 NA NA chr15:75308118,chr15:75308119 chr15:75143683,chr15:75143681 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none SCAMP_family(22%)| SCAMP(1%)| 6 4 9 361 36 ENST00000425597.8 unknown downstream upstream duplicates(3),mismatches(4) CGCATCGCTCGGGTGCAGCGCAGCTCAGCGCAGCGCTGCGGCCTTTCGGCAGCCGAACGGCCGCGGCAG___G?TCAATCAATTCTCCTGCTTCAACCTCCCGAG...___TTCAGGACAAAGAGGTGTGGGCAGGCCACTGGGCCAGCTGGTAA...GTGAACAACTTCCCACCATTGCCCAAATTCATCCCGCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGATATTCCTCCCCAGCATGTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGT|ATACTTCCTCTTATCTCTTATCTTCCCACCTGAGCCACCAGTTCATAGAGGGTATGAATGTCTGACTGCCTCCAGGCATACAGCCAGAACTCACTGTGTCTGGACGGGCCTCATACTACAGCCTCCACCCCTTCCAACCTCCTCTGCGACAGACTGTGGCTATGTTCTTCCTGCTGAACACCACCTCTGCCCTGATGGCTCCTGCAACTTGGACAAAGTGACAAGGTGAAGTTCAGGAGGCTCTGTGTTGCTGAAGAATTGGCCTTGAGGTTATTTCATGCCTG VNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWM|ytssyllsshlshqfiegmnv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2326 MINDY3::DCLRE1C ENSG00000148481.14::ENSG00000152457.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 205 TRUE 383 TRUE 142 MINDY3 ENSG00000148481.14 protein_coding - - chr10:15778170-15860507:- chr10:15786561:- chr10:15820169-15902506:- chr10:15828560:- DCLRE1C ENSG00000152457.19 protein_coding - - chr10:14897359-14954432:- chr10:14939869:- chr10:14939358-14996431:- chr10:14981868:- chr10:15783101,chr10:15783104 chr10:14940833,chr10:14940833 NA NA chr10:15825100,chr10:15825103 chr10:14982832,chr10:14982832 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Deubiquitinating_enzyme_MINDY-3/4__conserved_domain(100%)|Beta-lactamase_superfamily_domain(61%),DNA_repair_metallo-beta-lactamase(100%) DUF4205(100%)|DRMBL(100%),Lactamase_B_2(26%),Pre-SET(100%),SET(100%) 5 4 5 64 51 ENST00000277632.8 ENST00000378289.8 upstream downstream duplicates(1),mismatches(1) TGAAAACATAAAAAACGAAATTGAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAG___CCAAAGTTTAATTAATCTCCTGCTGACGGGACATGCTGTTTCTAATGTATGGGATGGTGgTAGAGAGTGCTCAGGAATGA___AACTTCTTG...CTTACTTGAAATCTCCAAAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAG___GATATGGCTTTAGTTGCCCCTGAAGCT...CCGATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATA___TATAAATCTCATGAAGAATAAATTAGATCCAGAAGGATTAGGAATCATATTATTGGGCCCATTTCTTCAAGAATTTTTTCCTGATCAG|ATATCTATTGAAATCGAGACTCCTACCCAGATATCTTTAGTGGATGAAGCATCAGGAGAG___AAGGAAGAGATTGTTGTGACTCTCTTACCAGCTGGTCACTGTCCGGGATCAGTTAT___GTTTTTATTTCAGGGCAATAATGGAACT DSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQ|ISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2327 MINDY3::DCLRE1C ENSG00000148481.14::ENSG00000152457.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 383 TRUE 142 MINDY3 ENSG00000148481.14 protein_coding - - chr10:15778170-15860507:- chr10:15789247:- chr10:15820169-15902506:- chr10:15831246:- DCLRE1C ENSG00000152457.19 protein_coding - - chr10:14897359-14954432:- chr10:14939869:- chr10:14939358-14996431:- chr10:14981868:- chr10:15783101,chr10:15783104 chr10:14940833,chr10:14940833 NA NA chr10:15825100,chr10:15825103 chr10:14982832,chr10:14982832 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion high none Deubiquitinating_enzyme_MINDY-3/4__conserved_domain(100%)|Beta-lactamase_superfamily_domain(61%),DNA_repair_metallo-beta-lactamase(100%) DUF4205(100%)|DRMBL(100%),Lactamase_B_2(26%),Pre-SET(100%),SET(100%) 2 0 2 76 51 ENST00000277632.8 ENST00000378289.8 upstream downstream mismatches(1) CGGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGA___AACTTCTTaGTATACATGAACAAGCAGCAGTAGaATTTTTAACACTA...GTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAG___GATATGGCTTTAGTTGCCCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAG___ATAATGGATTCATACCCGATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATA|ATATCTATTGAAATCGAGACTCCTACCCAGATATCTTTAGTGGATGAAGCATCAGGAGAG___AAGGAAGAGATTGTTGTGACTCTCTTACCtGCTGGgCACTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2328 LMO7-AS1::UCHL3 ENSG00000261105.6::ENSG00000118939.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 384 TRUE 143 LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75622260:- chr13:76178836-76210130:- chr13:76196396:- UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(20%) |Peptidase_C12(19%) 1 1 11 9 162 ENST00000568735.1 ENST00000377595.8 upstream upstream mismatches(1) CTCCCCCGCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG___GCATATTCTACCAGTGCAAGAGATCAACAATGATTACAAAATTG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2329 LMO7-AS1::UCHL3 ENSG00000261105.6::ENSG00000118939.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 384 TRUE 143 LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75635829:- chr13:76178836-76210130:- chr13:76209965:- UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(20%) |Peptidase_C12(19%) 3 2 4 69 162 ENST00000568302.5 ENST00000377595.8 upstream upstream mismatches(3) CCCCTGCCCTCTCCCGGGCCCCTGAGAGCGGCGCCCCTCCCGGCTCGCGGCCGCCCGGCCCGCTTGACATACCAGAAATAGCTGCACACAATTGTACCTTTCCCGGCCAAGAAACCTCCCCCGCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2330 LMO7-AS1::UCHL3 ENSG00000261105.6::ENSG00000118939.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 384 TRUE 143 LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75635829:- chr13:76178836-76210130:- chr13:76209965:- UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75605729:+ chr13:76123619-76180156:+ chr13:76179865:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(4%) |Peptidase_C12(0%) 0 1 3 69 99 ENST00000568302.5 ENST00000377595.8 upstream upstream none CGGGCCCCTGAGAGCGGCGCCCCTCCCGGCTCGCGGCCGCCCGGCCCGCTTGACATACCAGAAATAGCTGCACACAATTGTACCTTTCCCGGCCAAGAAACCTCCCCCGCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG|GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGGAAACACCAAAAACTGTATTATTTGCAACTAAATTTTCTCTGCCATACACTAACTCAAAAATTTTGATATTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2332 ENSG00000236760::EIPR1 ENSG00000236760.1::ENSG00000032389.13 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 207 TRUE 385 TRUE 144 ENSG00000236760 ENSG00000236760.1 lncRNA - - chr2:3131581-3145780:- chr2:3145547:- chr2:3135353-3149551:- chr2:3149318:- EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3257455:- chr2:3192696-3381601:- chr2:3261226:- chr2:3134706 chr2:3307271 NA NA chr2:3138478 chr2:3311042 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |WD_domain__G-beta_repeat(100%) |WD40(100%) 2 2 8 339 589 ENST00000419347.1 ENST00000398659.8 upstream downstream duplicates(1) GGGCACGGTGCCAGCCTCTGATCTGGGTCCTTGCTGCCATATGAAGACACCCACCTACCCTGCTGGAGAGGGGCTCTGGAGGGCCAGGGAGAGAGAGGATAGCTGGGCTCCAGTCGGTGCCCCATCCAGAGCCCACAGACAGGACAAAGCCATCCCGGGCCCTCCAGCCCCCGTTGGCCATCGCAGCACACGCCACCTGCACAAAG|CTTCAGACAGCAAAGTCCTGACATGTGCAGCCGTGTGGAGGATGCCGAAGGAATTGGAATCAGGCAGCCACGAGTCCCCTGATGATTCATCCAGCACTGCACAGACCCTGGAGCTGCTCTGTCACCTTGACAACACAGCCCATGGCAACATGGCCTG___TGTCGTGTGGGAGCCAATGGGAGAcGGGAA...GTTCACCgCAGGACGGTGGAGCCCACATCATAACTGCACCCAGGTGGCCACAGCGAACGACACCACCCTCCGTGGCTGGGACACCCGGAGCATGAG___CCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2333 ENSG00000236760::EIPR1 ENSG00000236760.1::ENSG00000032389.13 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 385 TRUE 144 ENSG00000236760 ENSG00000236760.1 lncRNA - - chr2:3131581-3145780:- chr2:3145547:- chr2:3135353-3149551:- chr2:3149318:- EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3214248:- chr2:3192696-3381601:- chr2:3218019:- chr2:3134706 chr2:3307271 NA NA chr2:3138478 chr2:3311042 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |WD_domain__G-beta_repeat(100%) |WD40(100%) 2 2 5 339 331 ENST00000419347.1 ENST00000398659.8 upstream downstream duplicates(1) GGGCACGGTGCCAGCCTCTGATCTGGGTCCTTGCTGCCATATGAAGACACCCACCTACCCTGCTGGAGAGGGGCTCTGGAGGGCCAGGGAGAGAGAGGATAGCTGGGCTCCAGTCGGTGCCCCATCCAGAGCCCACAGACAGGACAAAGCCATCCCGGGCCCTCCAGCCCCCGTTGGCCATCGCAGCACACGCCACCTGCACAAAG|TGTCGTGTGGGAGCCAATGGGAGATGGGAAGAAAATCATTTCCTTGGCTGATAACCATATCCTGCTGTGGGATTTACAGGAAAGCTCGAGCCAGGCTGTG___CTGGCCAGCTCAGCGTCCCTGGAAGGGAAGGGACAACTGAAGTTCACCTCAGGACGGTGGAGCCCACATCATAACTGCACCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2334 ENSG00000236760::EIPR1 ENSG00000236760.1::ENSG00000032389.13 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 385 TRUE 144 ENSG00000236760 ENSG00000236760.1 lncRNA - - chr2:3131581-3145780:- chr2:3145547:- chr2:3135353-3149551:- chr2:3149318:- EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3197017:- chr2:3192696-3381601:- chr2:3200788:- chr2:3134706 chr2:3307271 NA NA chr2:3138478 chr2:3311042 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |WD_domain__G-beta_repeat(100%) |WD40(100%) 1 0 1 339 518 ENST00000419347.1 ENST00000398659.8 upstream downstream none GGGAGAGAGAGGATAGCTGGGCTCCAGTCGGTGCCCCATCCAGAGCCCACAGACAGGACAAAGCCATCCCGGGCCCTCCAGCCCCCGTTGGCCATCGCAGCACACGCCACCTGCACAAAG|CTGGCCAGCTCAGCGTCCCTGGAAGGGAAGGGACAACTGAAGTTCAC...GGCTGGGACACCCGGAGCATGAG___CCAGATCTACTGCATAGAGAATGCCCACGGACAGCTGGTGCGGGACCTTGACTTTAATCCCAATAAGCAGTACTACTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2335 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LMO7 ENSG00000136153.20 protein_coding + - chr13:75620434-75859870:+ chr13:75635466:- chr13:76194570-76434006:+ chr13:76209602:- UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(20%) |Peptidase_C12(19%) 1 1 6 4 162 unknown ENST00000377595.8 upstream upstream none GCCGCTTCCCCCCGGCGGAGTTCGGCCCCGCTCCGCCCGGCTTCCAGGTGGGTGCGGTGGAAGGAGGGTCCCTGCCCCTCCACCCCGGCTCGCGGCTGAGGGTTCGAGCAAGCTGGAGGGTTCCTTGCATTCCCCACTTCCCGCCCGCTCAGCCCAGTTTAGGCCGTTTGATGATCGCCCTCGCGGTGAGCGTCAAAATTCCCACCCTTCGTGGTTTGAGGACACTCAGGGGACAGCGAGGTGGCAGGTTATGCGGTATCCGCCGCGGCCCTGG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2336 MED27::CFAP77 ENSG00000160563.14::ENSG00000188523.9 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 386 FALSE NA MED27 ENSG00000160563.14 protein_coding - - chr9:131852928-132079867:- chr9:132077442:- chr9:134728315-134955254:- chr9:134952829:- CFAP77 ENSG00000188523.9 protein_coding + - chr9:132410043-132573319:+ chr9:132515865:- chr9:135285430-135448706:+ chr9:135391252:- chr9:132061104,chr9:132061106 chr9:132516171,chr9:132516170 NA NA chr9:134936491,chr9:134936493 chr9:135391558,chr9:135391557 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 1 5 274 1 ENST00000651950.1 unknown upstream downstream none AGACGCTGGAGGGCCGGGAGAAGGCCTTTATTGCGCACTTCCAGGACAACTTACATTCGGTCAACCGGGACCTCAA___TGAGCTGGAACGTCTGAGCAATCTG...AGGCAAGCCATCTGAGAACCATCCTCTTCATAACAGTGGGCTGTTAAGCCTGGATCCTGTGCAGGACAAAACTCCTCTCTATAGTCAACTCCTTCAAGCATATAAGTGGTCAAACAAG|TGGAAGGAGTGTTAATCCCACTGACCGACGG...ACCATGGAAATGGGAGAGGTCTGTGTTGAGTCTCGAGTCTTCAGGCTTCAAGGCAAGTTCTCTATCCTCTCTCTGCCTTCATCTCTGCTCGCTGCAGAAAG GKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNK|wkec* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2338 NFAM1::RRP7BP ENSG00000235568.7::ENSG00000291035.1 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFAM1 ENSG00000235568.7 protein_coding - - chr22:42380407-42432403:- chr22:42409435:- chr22:42776413-42828409:- chr22:42805441:- RRP7BP ENSG00000291035.1 lncRNA - - chr22:42555212-42582039:- chr22:42556674:- chr22:42951218-42978045:- chr22:42952680:- chr22:42407027 chr22:42565575 NA NA chr22:42803033 chr22:42961581 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 1 3 6 13 ENST00000329021.10 ENST00000357802.7 upstream downstream mismatches(1) CGAGAGCCCCCGCAGAGTCCACAGAAGCTCCTGCTCTTTGaCTTCACCGGCCTCCTGAGTGTCCTGAGTGTAGTGGGCACGGCCCTGCTGCTCTGGAACAAG|TGTCCACCAAAGGAGACAGGGCTGGGAGCGCTGCCCGGGGCCCAGGTCCTCCCTAATGACAGCATGCACGAAAGCCCGCTTCTCACATCTGATTCCAGGAGAAAGAGCGGCGTGTCCAGCAAGATAAG...TGAATAGGGGGAAGAAGGAAAGGACACTCCCGCCTTTCCCTGGGGACCCTGGAGTTCCCCGAAACATCTTTTAGGCTGGGGGGAGGGTGCTGACCAAGAGG REPPQSPQKLLLFdFTGLLSVLSVVGTALLLWNK|cppketglgalpgaqvlpndsmhesplltsdsrrksgvsski NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2355 OSBPL5::ZNF195 ENSG00000021762.20::ENSG00000005801.18 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 209 FALSE NA FALSE NA OSBPL5 ENSG00000021762.20 protein_coding - - chr11:3087107-3166739:- chr11:3165216:- chr11:3108337-3187969:- chr11:3186446:- ZNF195 ENSG00000005801.18 protein_coding - - chr11:3339261-3379222:- chr11:3371703:- chr11:3360491-3400452:- chr11:3392933:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 0 8 1 1505 268 ENST00000348039.9 ENST00000528796.5 upstream downstream duplicates(2) CCTCGCTCCGCCTCGCGCGGGGGGACCATCTGCTGGCATTTCCTGCAGCCAGGCCCGCGCCGCCAGTGGAGCCCCCGCGCGCCCGGCCGGCCCGGAGCACCGAGCTCGCGGCACGGTAGGAG|ACTCTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCTCGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCGTTG___GTCTCACTGTCTGTAAGCCAGGCCTGATCACCTGCCTGGAGCAACGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2357 LMO7-AS1::ENSG00000261553 ENSG00000261105.6::ENSG00000261553.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 388 TRUE 145 LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75635829:- chr13:76178836-76210130:- chr13:76209965:- ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75594915:+ chr13:76123909-76381256:+ chr13:76169051:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 1 4 69 162 ENST00000568302.5 ENST00000563635.5 upstream upstream mismatches(3) CCCCTGCCCTCTCCCGGGCCCCTGAGAGCGGCGCCCCTCCCGGCTCGCGGCCGCCCGGCCCGCTTGACATACCAGAAATAGCTGCACACAATTGTACCTTTCCCGGCCAAGAAACCTCCCCCGCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2358 LMO7-AS1::ENSG00000261553 ENSG00000261105.6::ENSG00000261553.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 388 TRUE 145 LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75622260:- chr13:76178836-76210130:- chr13:76196396:- ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75594915:+ chr13:76123909-76381256:+ chr13:76169051:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 3 9 162 ENST00000568735.1 ENST00000563635.5 upstream upstream none CTCCCCCGCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG___GCATATTCTACCAGTGCAAGAGATCAACAATGATTACAAAATTG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2365 ENSG00000261553::UCHL3 ENSG00000261553.5::ENSG00000118939.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000261553 ENSG00000261553.5 lncRNA + - chr13:75549773-75807120:+ chr13:75635466:- chr13:76123909-76381256:+ chr13:76209602:- UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ chr13:75620188,chr13:75620195 chr13:75574613,chr13:75574606 NA NA chr13:76194324,chr13:76194331 chr13:76148749,chr13:76148742 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(20%) |Peptidase_C12(19%) 1 1 4 4 162 unknown ENST00000377595.8 upstream upstream none CCCCGCTCCGCCCGGCTTCCAGGTGGGTGCGGTGGAAGGAGGGTCCCTGCCCCTCCACCCCGGCTCGCGGCTGAGGGTTCGAGCAAGCTGGAGGGTTCCTTGCATTCCCCACTTCCCGCCCGCTCAGCCCAGTTTAGGCCGTTTGATGATCGCCCTCGCGGTGAGCGTCAAAATTCCCACCCTTCGTGGTTTGAGGACACTCAGGGGACAGCGAGGTGGCAGGTTATGCGGTATCCGCCGCGGCCCTGG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2366 LMO7::ENSG00000261553 ENSG00000136153.20::ENSG00000261553.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LMO7 ENSG00000136153.20 protein_coding + - chr13:75620434-75859870:+ chr13:75635466:- chr13:76194570-76434006:+ chr13:76209602:- ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75594915:+ chr13:76123909-76381256:+ chr13:76169051:+ NA NA NA NA NA NA NA NA antisense sense unknown intron exon/splice-site inversion/3'-3' medium none none none 1 1 4 4 162 unknown ENST00000563635.5 upstream upstream none CCCCGCTCCGCCCGGCTTCCAGGTGGGTGCGGTGGAAGGAGGGTCCCTGCCCCTCCACCCCGGCTCGCGGCTGAGGGTTCGAGCAAGCTGGAGGGTTCCTTGCATTCCCCACTTCCCGCCCGCTCAGCCCAGTTTAGGCCGTTTGATGATCGCCCTCGCGGTGAGCGTCAAAATTCCCACCCTTCGTGGTTTGAGGACACTCAGGGGACAGCGAGGTGGCAGGTTATGCGGTATCCGCCGCGGCCCTGG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2382 VDAC1::SKP1 ENSG00000213585.11::ENSG00000113558.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 392 FALSE NA VDAC1 ENSG00000213585.11 protein_coding - - chr5:133971871-134004975:- chr5:134004647:- chr5:133307562-133340666:- chr5:133340338:- SKP1 ENSG00000113558.19 protein_coding - - chr5:134148935-134176964:- chr5:134158595:- chr5:133484626-133512655:- chr5:133494286:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Skp1_family__dimerisation_domain(100%) |Skp1(100%) 0 1 0 11875 7870 ENST00000395047.6 ENST00000353411.11 upstream downstream none CCGCCTCCGAGCCCGCCGgCACATCCTCTGAG|GCTGCAAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 133340338 TRUE 133509713 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2384 LACC1::TPTE2P3 ENSG00000179630.11::ENSG00000244471.7 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LACC1 ENSG00000179630.11 protein_coding + + chr13:43879284-43893932:+ chr13:43881547:+ chr13:44453420-44468068:+ chr13:44455683:+ TPTE2P3 ENSG00000244471.7 transcribed_unprocessed_pseudogene + + chr13:52503320-52586906:+ chr13:52514788:+ chr13:53077455-53161041:+ chr13:53088923:+ chr13:43881632,chr13:43881633 chr13:52510602,chr13:52510600 NA NA chr13:44455768,chr13:44455769 chr13:53084737,chr13:53084735 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none none none 0 0 0 38 5 ENST00000441843.5 ENST00000441562.2 downstream upstream mismatches(1) CAGAATGAAATAGAAACATTTTTGAGAAGTCTGCCAGCACTGAGAGGAAAATTAACTATTATCACTTCTTCTTTGATCCCAG|TGTGTCAGAACGACcTTCCAG QNEIETFLRSLPALRGKLTIITSSLIP|vcqndlp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2388 KIF26B::SMYD3 ENSG00000162849.16::ENSG00000185420.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 393 FALSE NA KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245764149:- chr1:245912644-246670614:- chr1:245927451:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 2 1 112 2492 ENST00000407071.7 ENST00000490107.6 downstream downstream mismatches(1) GCACAGGCTCCCCGGGCTCCGGCAGCGGCGGCGGCTCCTCCCCCGGCTCGGAaCcCGGCGaCTGGgGCGAGAACTGCAACGCCCGCCTGGTGGAGCTCAAGAGGCAGGCCCTGAGGTTGCTCCTCCCGGGGCCCTTCCCGGGCAAG|GATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTG___GCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGC...TGAACCTCgCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCACAAGAATCATTAGTTGTAGAGAAGCACG TGSPGSGSGGGSSPGSepGdWgENCNARLVELKRQALRLLLPGPFPGK|dffprkpsrqrgssdeswqtaatsrhvspsneesetgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma,Sarcoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma,Sarcoma,Bladder Urothelial Carcinoma LUNG,LUNG,LUNG,LUNG,HEAD_AND_NECK,BONE_AND_SOFT_TISSUE,HEAD_AND_NECK,UTERUS,BONE_AND_SOFT_TISSUE,BLADDER no_match 245319985,245319985,245772830|245704252,245530669,245319985,245319985|245319985|245319985,245319985|245319985|245318789,245319985,245583047,245319985 TRUE,TRUE,FALSE|FALSE,FALSE,TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,TRUE,FALSE,TRUE 246093239,246093239,246093239|246027188,245927451,246093239,246027188|245927451|245912966,246093239|245927451|245912966,246027188,245927451,246093239 FALSE,FALSE,FALSE|FALSE,TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,TRUE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2403 VDAC1::ENSG00000272772 ENSG00000213585.11::ENSG00000272772.2 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 398 FALSE NA VDAC1 ENSG00000213585.11 protein_coding - - chr5:133971871-134004975:- chr5:134004647:- chr5:133307562-133340666:- chr5:133340338:- ENSG00000272772 ENSG00000272772.2 protein_coding - - chr5:134157088-134225861:- chr5:134158595:- chr5:133492779-133561552:- chr5:133494286:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none |Skp1(100%) 0 1 0 11875 7870 ENST00000395047.6 ENST00000519718.2 upstream downstream none CCGCCTCCGAGCCCGCCGgCACATCCTCTGAG|GCTGCAAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2409 STMP1::SLC13A4 ENSG00000243317.8::ENSG00000164707.16 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STMP1 ENSG00000243317.8 protein_coding + + chr7:135662496-135693418:+ chr7:135662593:+ chr7:135347244-135378166:+ chr7:135347341:+ SLC13A4 ENSG00000164707.16 protein_coding - + chr7:135681231-135729258:- chr7:135706622:+ chr7:135365979-135414006:- chr7:135391370:+ chr7:135690119 chr7:135690117 NA NA chr7:135374867 chr7:135374865 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Domain_of_unknown_function_(DUF4535)(4%)| DUF4535(0%)| 0 5 1 2188 38 ENST00000509448.5 unknown downstream upstream mismatches(1) CCCGCGCATGGGGAGGTAGGCTCGGACCGGCCCGCGGAGCTGCTGCAGTCCTTCGCGCCCTCCTCGCCCTCCCCACCGACATCATGCTCCAGTTCCT|GACATTGGCTGGAGCTTGGCGGTGATGTGTGTTTGTGTGTGGAAGGCAATACTTTGTTTGCCCTCGCAGCCAGCAATTCTGTGAGCGCCACGGCACTCCTTGCTTTGCCGCCAAGTCACCATAGATATCAGTGACCCAATAGAGATGAATGTTTGGAGCTCACAGTTCCACCCACTACCTGTCAACATGCTGAAGGCATAGCCCCCAAAGTaACAGAAGTGTCCCGTGTCACTGTGTGCACTTTTCCAGCTGACATCTTAAAGCGTCAACACTTGGAGAAAAACACTAACAAG___GTGGAATCACTGACTTTGCACAACaTGGGGtCAG MLQFl|tlagawr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2412 LMO7-AS1::TBC1D4 ENSG00000261105.6::ENSG00000136111.14 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LMO7-AS1 ENSG00000261105.6 lncRNA - - chr13:75604700-75635994:- chr13:75635829:- chr13:76178836-76210130:- chr13:76209965:- TBC1D4 ENSG00000136111.14 protein_coding - - chr13:75283503-75482169:- chr13:75362607:- chr13:75857639-76056305:- chr13:75936743:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Domain_of_unknown_function_(DUF3350)(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(69%),Rab-GTPase-TBC_domain(100%) |DUF3350(100%),PID(9%),RabGAP-TBC(100%) 1 2 1 69 120 ENST00000568302.5 ENST00000377636.8 upstream downstream duplicates(1),mismatches(1) GCCCTCTCCCGGGCCCCTGAGAGCGGCGCCCCTCCCGGCTCGCGGCCGCCCGGCCCGCTTGACATACCAGAAATAGCTGCACACAATTGTACCTTTCCCGGCCAAGAAACCTCCCCCcCTGGGGAGCGCGGCCCGCCGCCCTCACCTGAGCCCCGGCCAGCTGAGCCCGCTACCCGCTCTCCCGCCGCGATCCGGCCCAGCCGCCAG|GTTCCTGATGTTATTAGCAGCATAAGGCAATTATCTAAAGCGGCCATGAAAGAGGATGCCAAACCCAGCAAAGATAAT...CTGTGGAAAGGTGACCGTGACCCACAAGAAGGCCCCCTCAAGCCTCATCGATGACTGCATGGAGAAGTTCAGCCTGCACGAACAGCAGCGCCTGAAGATCCAAGGcGAGCAGCGCGGTCCGGACCCAGGAGAGGACCTGGCTGACTTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2446 UBE2L3::KRAS ENSG00000185651.16::ENSG00000133703.14 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 407 TRUE 146 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21611043:+ chr22:21903736-21978323:+ chr22:21965332:+ KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25245395:- chr12:25358180-25403870:- chr12:25398329:- chr22:21617715,chr22:21617715,chr22:21617715,chr22:21617715 chr12:25248666,chr12:25248679,chr12:25248698,chr12:25248734 NA NA chr22:21972004,chr22:21972004,chr22:21972004,chr22:21972004 chr12:25401600,chr12:25401613,chr12:25401632,chr12:25401668 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site translocation high none Ubiquitin-conjugating_enzyme(71%)|Ras_family(100%) RWD(1%),UEV(63%),UQ_con(85%)|Arf(100%),GTP_EFTU(100%),MMR_HSR1(100%),Ras(100%),Roc(100%) 65 74 83 1158 271 ENST00000342192.9 ENST00000256078.10 downstream downstream duplicates(26),low_entropy(2),mismappers(1),mismatches(22) CCAGCAGGAGGCTGATGAAG___GAGCTTGAAGAAATCCGCAAATGTGGGATGAAAAACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCT___GACAACCCTCCATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAG|GCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAATATGATCCAACAATAGAG___GATTCCTACAGGAAGCAAGTAGTAATTGATGGAGAAACCTGTCTCTTGGATATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGCAATGAGGGACCAGTACATGAGGACTGGGGAGGGCTTTCTTTGTGTATTTGC SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQ|gllkMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense 2447 UBE2L3::KRAS ENSG00000185651.16::ENSG00000133703.14 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 407 TRUE 146 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21611043:+ chr22:21903736-21978323:+ chr22:21965332:+ KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25227412:- chr12:25358180-25403870:- chr12:25380346:- chr22:21617715,chr22:21617715,chr22:21617715,chr22:21617715 chr12:25248666,chr12:25248679,chr12:25248698,chr12:25248734 NA NA chr22:21972004,chr22:21972004,chr22:21972004,chr22:21972004 chr12:25401600,chr12:25401613,chr12:25401632,chr12:25401668 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Ubiquitin-conjugating_enzyme(71%)|Ras_family(81%) RWD(1%),UEV(63%),UQ_con(85%)|Arf(49%),GTP_EFTU(100%),MMR_HSR1(8%),Ras(49%),Roc(8%) 1 0 23 1158 343 ENST00000458578.6 ENST00000256078.10 downstream downstream duplicates(2),mismatches(5) ACTTCCGTAACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCT___GACAACCCTCCATATGATAAGGGAGCCTTCAGAATCGAAATCAACTTTCCAGCAGAGTACCCATTCAAACCACCGAAGATCACATTTAAAACAAAGATCTATCACCCAAACATCGACGAAAAGGGGCAGGTCTGTCTGCCAGTAATTAGTGCCGAAAACTGGAAGCCAGCAACCAAAACCGACCAAG|GATTCCTACAGGAAGCAAGTAGTAATTGATGGAGAAACCTGTCTCTTGGATATTCTCGACACAGCAGGTCAAGAGGAGTACAGTGCAATGAGGGACCAGTACATGAGGACTGGGGAGGGCTTTCTTTGTGTATTTGCCATAAATAATACTAAATCATTTGAAGATATTCACCATTATAG___AGAACAAATTAAAAGAGTTAAGGACTCTGA FRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQ|gflqeassn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense 2448 ZNF654::HTR1F ENSG00000175105.8::ENSG00000179097.7 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF654 ENSG00000175105.8 protein_coding + + chr3:88059255-88144660:+ chr3:88059505:+ chr3:88108405-88193810:+ chr3:88108655:+ HTR1F ENSG00000179097.7 protein_coding + - chr3:87792706-87993839:+ chr3:87892031:- chr3:87841856-88042989:+ chr3:87941181:- chr3:88061894 chr3:87909077 NA NA chr3:88111044 chr3:87958227 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 8 17 10 40 38 ENST00000636215.2 unknown downstream downstream duplicates(5),mismatches(6) GCGGCGGCGCAGGGGCTGGTACGCGCTGGGCGGCGAGAGCCTCATGGCGGAGGAAGAGAGCGACCAAGAGGCCGAACGCCTCGGAGAAGAGCTTGTGGCCATTGTGGAGTCCCCGCTGGGCCCTGTGGGGCTTAGAGCTGCGGGCGACGGCAGAGGCGGCGCTGGCAGCGGCAACTGCGGCGGCGGCGTCGGAATCAGCAGTCGGGATTACTGCCGACGCTTCTGTCAG|GTTTCTGCAAGATCCAGGGAAGAAGAGAAGATACTACTATGTGGAAGGGTGAAAATGTGTCTTGAGTTGGCAGCTCAACAGGAACATGAGCTTGCCTTAAGTCATCTGTGTTTCTCCCACTCCTGGCATTGTACAGTAGTCAGAGACTAATTACAGTGGTGATTATAAAGTTAATGAAGTTGAAAAATTCACGGAAATAATTATGTCTGAATGAATGGGATAAAGAATGTGACATACAAGACATAATGACTAATTGGACACTGAAAGAGCTGA MAEEESDQEAERLGEELVAIVESPLGPVGLRAAGDGRGGAGSGNCGGGVGISSRDYCRRFCQ|vsarsreeekillcgrvkmclelaaqqehelalshlcfshswhctvvrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2449 CASP7::PLEKHS1 ENSG00000165806.21::ENSG00000148735.16 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE TRUE 211 TRUE 408 TRUE 147 CASP7 ENSG00000165806.21 protein_coding + + chr10:113679162-113730907:+ chr10:113679978:+ chr10:115438921-115490666:+ chr10:115439737:+ PLEKHS1 ENSG00000148735.16 protein_coding + + chr10:113751262-113783429:+ chr10:113780602:+ chr10:115511021-115543188:+ chr10:115540361:+ chr10:113685476,chr10:113685457,chr10:113685474 chr10:113779927,chr10:113779918,chr10:113779925 NA NA chr10:115445235,chr10:115445216,chr10:115445233 chr10:115539686,chr10:115539677,chr10:115539684 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 0 18 12 50 50 ENST00000369321.6 ENST00000694986.1 downstream upstream duplicates(3),mismatches(1) GGGGCCCCAGACCCTTGCTGCGGAGCGACGGAGAGAGACTGTGCCAGTCCCAGCCGCCCTACCGCCGTGGGAACG|AAATTAAAGCTTACCATCGGCAGGATCCCAAATTCAGAGACATTCCATGCcGCATCCTGTATGTGTCCCTCAAAATGCCAAAGTGCTGCACCTTCTCAGCTGGATAAGCCTAGACTGAACAGAGCTCCCAAGAGGAGTCCGGCCATTAAAAAGAGCCAGCAGAAAGGAGCCAGGGAGTAACGCACCCCAGACCCATGGCAGCAGAACCAGGATGGAGCTGGGACTGTCCAGCTCTGCCCCCTGCTGCTGCCATGTGATAGGAGACAGTCGGC GPQTLAAERRRETVPVPAALPPWEr|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2450 CASP7::PLEKHS1 ENSG00000165806.21::ENSG00000148735.16 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE TRUE 212 TRUE 408 TRUE 147 CASP7 ENSG00000165806.21 protein_coding + + chr10:113679162-113730907:+ chr10:113679349:+ chr10:115438921-115490666:+ chr10:115439108:+ PLEKHS1 ENSG00000148735.16 protein_coding + + chr10:113751262-113783429:+ chr10:113780602:+ chr10:115511021-115543188:+ chr10:115540361:+ chr10:113685476,chr10:113685457,chr10:113685474 chr10:113779927,chr10:113779918,chr10:113779925 NA NA chr10:115445235,chr10:115445216,chr10:115445233 chr10:115539686,chr10:115539677,chr10:115539684 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none none none 2 9 11 50 50 ENST00000621345.4 ENST00000694986.1 downstream upstream duplicates(5) AGCATCTCCACCAGCAAGCTGGGCTGCTGGGTGGGTACTTCCTTCAAAGCTGAGGGAGCGTCCTACGCCCACGCGCGCAGGAGGGCGCCCCCCGCAAAGCAACGTCTAGGAGACCACAGTGGATGCCACAGCGGGCCCGAAGCGGATCAGCCTTGTGGG|AAATTAAAGCTTACCATCGGCAGGATCCCAAATTCAGAGACATTCCATGCcGCATCCTGTATGTGTCCCTCAAAATGCCAAAGTGCTGCACCTTCTCAGCTGGATAAGCCTAGACTGAACAGAGCTCCCAAGAGGAGTCCGGCCATTAAAAAGAGCCAGCAGAAAGGAGCCAGGGAGTAACGCACCCCAGACCCATGGCAGCAGAACCAGGATGGAGCTGGGACTGTCCAGCTCTGCCCCCTGCTGCTGCCATGTGATAGGAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2452 NUBPL::ENSG00000248975 ENSG00000151413.17::ENSG00000248975.2 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31599379:+ chr14:31959162-32330430:+ chr14:32068585:+ ENSG00000248975 ENSG00000248975.2 lncRNA - + chr14:29952397-30297043:- chr14:30259258:+ chr14:30421603-30766249:- chr14:30728464:+ chr14:31615659,chr14:31615632,chr14:31615660 chr14:30255146,chr14:30254906,chr14:30255144 NA NA chr14:32084865,chr14:32084838,chr14:32084866 chr14:30724352,chr14:30724112,chr14:30724350 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none NUBPL_iron-transfer_P-loop_NTPase(25%)| AAA_31(100%),CbiA(12%),MipZ(13%),ParA(12%)| 1 0 6 207 1 ENST00000281081.12 unknown downstream upstream none GGCGGGGCCACTGCCCCGCTTGGGGGAAGCCGAGCGATGGTTTGTGGGCGCCAG___TTGTCTGGCGCCGGGAGTGAGACCCTAAAACAAAGAAGAACACAAAT...AAACAAGTTATAGTTGTGGCTTCTGGAAAGGGTGGAGTCGGAAAATCTACTACAGCAG___TGAATCTTGCACTTGCACTAGCAGCGAACGATTCG___TCCAAGGCCATTGGTTTGCTAGATGTGGATGTGTATGGACCTTCAGTTCCAAAGATGATGAATCTGAAAGGAAATCCGGAATTATCACAGA|ATGAGATGCTATTGAATGGTATTCTCCTGTAAGCCAGCCCTGCTGTTGACTATGTTTGGTGGCATTGGCTCTCCTAATATCTGTAGGAGATGAC KQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMNLKGNPELSQ|nemllngill* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2457 RTRAF::LINC00871 ENSG00000087302.9::ENSG00000258700.6 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RTRAF ENSG00000087302.9 protein_coding + + chr14:51989514-52010694:+ chr14:52001866:+ chr14:52456232-52477412:+ chr14:52468584:+ LINC00871 ENSG00000258700.6 lncRNA + + chr14:45891087-46501903:+ chr14:46067492:+ chr14:46360290-46971106:+ chr14:46536695:+ chr14:52003242,chr14:52003243 chr14:46066977,chr14:46066965 NA NA chr14:52469960,chr14:52469961 chr14:46536180,chr14:46536168 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none RNA_transcription__translation_and_transport_factor_protein(72%)| RLL(82%)| 1 0 1 1502 0 ENST00000261700.8 unknown downstream upstream duplicates(2),mismatches(1) AAAATGCAGAACCATTGATCAATTTGGATG___TAAATAATCCTGATTTTAAGGCTGGTGTGATGGCTTTGGCTAACCTGCTTCAGATTCAGCGTCATGATGATTACCTGGTAATGCTTAAG___GCAATTCGGATTTTGGTTCAGGAGCGCCTGACACAGGATGCAGTTGCTAAGGCAAATCAAACAAAAGAG|GATGAAAATATGGCTAAATGTATACTATTCCTAGCAGCAACAtGGAAAATAAAAGG NAEPLINLDVNNPDFKAGVMALANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKE|denmakcilflaatwkik NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2460 DPY19L2P2::DNAJC2 ENSG00000291139.1::ENSG00000105821.15 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 410 TRUE 148 DPY19L2P2 ENSG00000291139.1 lncRNA - - chr7:103175133-103280410:- chr7:103240562:- chr7:102815580-102920857:- chr7:102881009:- DNAJC2 ENSG00000105821.15 protein_coding - - chr7:103312289-103344830:- chr7:103341954:- chr7:102952736-102985277:- chr7:102982401:- chr7:103239414,chr7:103239418 chr7:103343838,chr7:103343838 NA NA chr7:102879861,chr7:102879865 chr7:102984285,chr7:102984285 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |DnaJ_domain(100%),Myb-like_DNA-binding_domain(100%),Ribosome-associated_complex_head_domain(100%) |DnaJ(100%),Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),RAC_head(100%) 1 0 1 2 210 ENST00000689081.1 ENST00000379263.8 upstream downstream none CGCACATTCATGGGAATAGTGAATTTATTTGGACTAGAAACTAAGACCTGCTGGAATGTCACCAGAATAGAACCTCTTAATGAAGTTCAAAGCTGTGAAGG...TTCATATATGGAACATACCTAAG___TGGTACTGAACTGGGAGGTCTTATTACAGTACTGTGCTTCTTTTTCAACCATGGAGAG___GCCACCTGTGTGATGTGGAC...CTTGTACTTCAGATGTATGTTTTAACTTTGATTCTCAG|CCTCTACACTCTGTCAAGTTGAAaCTGTGGGAAGATGGTTTGAAGCTTTTGTTAAtAGGAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2461 DPY19L2P2::DNAJC2 ENSG00000291139.1::ENSG00000105821.15 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 410 TRUE 148 DPY19L2P2 ENSG00000291139.1 lncRNA - - chr7:103175133-103280410:- chr7:103242989:- chr7:102815580-102920857:- chr7:102883436:- DNAJC2 ENSG00000105821.15 protein_coding - - chr7:103312289-103344830:- chr7:103341954:- chr7:102952736-102985277:- chr7:102982401:- chr7:103239414,chr7:103239418 chr7:103343838,chr7:103343838 NA NA chr7:102879861,chr7:102879865 chr7:102984285,chr7:102984285 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |DnaJ_domain(100%),Myb-like_DNA-binding_domain(100%),Ribosome-associated_complex_head_domain(100%) |DnaJ(100%),Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),RAC_head(100%) 0 0 0 1 210 ENST00000689081.1 ENST00000379263.8 upstream downstream multimappers(1) ACTGGGAGGTCTTATTACAGTACTGTGCTTCTTTTTCAACCATGGAGAG|CCTCTACACTCTGTCAAGTTGAACCTGTGGGAAGATGGTTTGAAGCTTTTGTTAAGAGGAGAAACAGAAATGCTTCTGCCTCTTTTCAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2462 DPY19L2P2::DNAJC2 ENSG00000170629.17::ENSG00000105821.15 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 411 TRUE 149 DPY19L2P2 ENSG00000170629.17 transcribed_unprocessed_pseudogene - - chr7:103175343-103277638:- chr7:103240562:- chr7:102815790-102918085:- chr7:102881009:- DNAJC2 ENSG00000105821.15 protein_coding - - chr7:103312289-103344830:- chr7:103341954:- chr7:102952736-102985277:- chr7:102982401:- chr7:103239414,chr7:103239418 chr7:103343838,chr7:103343838 NA NA chr7:102879861,chr7:102879865 chr7:102984285,chr7:102984285 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |DnaJ_domain(100%),Myb-like_DNA-binding_domain(100%),Ribosome-associated_complex_head_domain(100%) |DnaJ(100%),Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),RAC_head(100%) 1 0 1 2 210 ENST00000435536.5 ENST00000379263.8 upstream downstream none CGCACATTCATGGGAATAGTGAATTTATTTGGACTAGAAACTAAGACCTGCTGGAATGTCACCAGAATAGAACCTCTTAATGAAGTTCAAAGCTGTGAAGG...TTCATATATGGAACATACCTAAG___TGGTACTGAACTGGGAGGTCTTATTACAGTACTGTGCTTCTTTTTCAACCATGGAGAG___GCCACCTGTGTGATGTGGAC...CTTGTACTTCAGATGTATGTTTTAACTTTGATTCTCAG|CCTCTACACTCTGTCAAGTTGAAaCTGTGGGAAGATGGTTTGAAGCTTTTGTTAAtAGGAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2463 DPY19L2P2::DNAJC2 ENSG00000170629.17::ENSG00000105821.15 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 411 TRUE 149 DPY19L2P2 ENSG00000170629.17 transcribed_unprocessed_pseudogene - - chr7:103175343-103277638:- chr7:103242989:- chr7:102815790-102918085:- chr7:102883436:- DNAJC2 ENSG00000105821.15 protein_coding - - chr7:103312289-103344830:- chr7:103341954:- chr7:102952736-102985277:- chr7:102982401:- chr7:103239414,chr7:103239418 chr7:103343838,chr7:103343838 NA NA chr7:102879861,chr7:102879865 chr7:102984285,chr7:102984285 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |DnaJ_domain(100%),Myb-like_DNA-binding_domain(100%),Ribosome-associated_complex_head_domain(100%) |DnaJ(100%),Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),RAC_head(100%) 0 0 0 1 210 ENST00000435536.5 ENST00000379263.8 upstream downstream multimappers(1) ACTGGGAGGTCTTATTACAGTACTGTGCTTCTTTTTCAACCATGGAGAG|CCTCTACACTCTGTCAAGTTGAACCTGTGGGAAGATGGTTTGAAGCTTTTGTTAAGAGGAGAAACAGAAATGCTTCTGCCTCTTTTCAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2464 SCYL2::SLC17A8 ENSG00000136021.19::ENSG00000179520.11 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCYL2 ENSG00000136021.19 protein_coding + + chr12:100267140-100341715:+ chr12:100298175:+ chr12:100660918-100735493:+ chr12:100691953:+ SLC17A8 ENSG00000179520.11 protein_coding + + chr12:100357074-100422055:+ chr12:100380701:+ chr12:100750852-100815833:+ chr12:100774479:+ chr12:100308824,chr12:100308824,chr12:100308824,chr12:100308824 chr12:100365509,chr12:100365505,chr12:100365494,chr12:100365461 NA NA chr12:100702602,chr12:100702602,chr12:100702602,chr12:100702602 chr12:100759287,chr12:100759283,chr12:100759272,chr12:100759239 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Protein_kinase_domain(41%)|Major_Facilitator_Superfamily(100%) PK_Tyr_Ser-Thr(49%),Pkinase(48%)|MFS_1(100%) 2 2 3 52 6 ENST00000360820.7 ENST00000323346.10 downstream upstream duplicates(1) GTCCAACAGTTAACTCGGCTTCGACACCCTCGACTTCTTACTGTCCAGCATCCTTTAGAAGAATCCAG___GGATTGCTTGGCATTTTGTACAGAACCAGTTTTTGCCAGTTTAGCCAATGTTCTTGGTAACTGGGAAAATCTACCTTCCCCTATATCTCCAGACATTAAGGATTATAAACTTTATGATGTAGAAACCAAATATGGTTTGCTTCAG|AAAAATCGATGGGACAACTGAGGAAGAAGATAACATTGAGCTGAATGAAGAAGGAAGGCCGGTGCAGACGTCCAGGCCAAGCCCCCCACTCTGCGACTGCCACTGCTGCGGCCTCCCCAAG...TGTGGAAATGGTCAACAATAGCACCGTATATGTTGATGGAAAACCGGAAATTCAG___ACAGCACAGTTTAACTGGGATCCAGAAACAGTGGGCCTTATCCATG VQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSPISPDIKDYKLYDVETKYGLLQ|knrwdn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE SCY1-like protein 2 Other SCY1 Q6P3W7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2465 ENSG00000290576::ANKS1B ENSG00000290576.1::ENSG00000185046.21 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000290576 ENSG00000290576.1 lncRNA - - chr12:100173196-100199783:- chr12:100177043:- chr12:100566974-100593561:- chr12:100570821:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99825389:- chr12:99120235-100378714:- chr12:100219167:- chr12:100175807,chr12:100175812,chr12:100175816 chr12:99837141,chr12:99837143,chr12:99837143 NA NA chr12:100569585,chr12:100569590,chr12:100569594 chr12:100230919,chr12:100230921,chr12:100230921 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Ankyrin_repeats_(3_copies)(84%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) |Ank(100%),Ank_2(20%),Ank_3(100%),Ank_4(100%),Ank_5(100%),DUF3699(100%),PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 1 2 1 16 6 ENST00000550096.5 ENST00000547776.6 upstream downstream duplicates(1) CAGGAAGAAAAGAAGGAGCCAACCCCTGAAGGAAACAAAG___TTTCACAAAGGCTGAAAAATTTGCCTCATACTTCCCTCAAAGCCAAACAGTTGCTTCAAACTTCATCTACAAATAGAG|CATCTGGCGAGGCCCCAATGTGAACTGCACAGACAGTTCGGGTTACACTGCTTTACACCACGCAGCCTTAAATGGACATAA___GGACATAGTTCTCAAACTACTTCAGTATGAGGCATCAACAAATGTAGCAGACAACAAAGGGTATTTTCCTATTCACCTGGCTGCCTG...GCGGCcCTCTACGGACGGCTTAGAGTGGTAAAAATGATCATCAGTGCACATCCTAACTTAATGAGCTGCAACACTCGCAAGCACACGCCACTTCACCTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2476 SRPK1::ILRUN ENSG00000096063.16::ENSG00000196821.10 SNU387 SRR8615311 SRR8670767 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SRPK1 ENSG00000096063.16 protein_coding - - chr6:35832966-35921342:- chr6:35870167:- chr6:35800743-35889119:- chr6:35837944:- ILRUN ENSG00000196821.10 protein_coding - + chr6:34587288-34696859:- chr6:34660506:+ chr6:34555065-34664636:- chr6:34628283:+ NA NA NA NA NA NA NA NA sense antisense stop-codon intron intron inversion/5'-5' medium none Protein_kinase_domain(47%)| PK_Tyr_Ser-Thr(100%),Pkinase(68%)| 8 10 14 26 19 ENST00000373825.7 unknown upstream upstream duplicates(1),mismatches(1) AGCGAATGCAGGAAATTGAGGAAATGGAGAAAGAGTCGGGCCCTGGGCAAAAAAGACCAAACAAGCAAGAAGAATCAGAGAGTCCTGTTGAAAGACCCTTGAAAGAGAACCCACCTAATAAAATGACCCAAGAAAAACTTGGTATAAATAGAACATCACGAAAATTACTGTACAACACACTTTAACGTTAATTTATCATTGCTATATAATACAGTGGTTTCATACATACAACACATCTCTGGGGGTATCTTTATA|ATGTTATCAGGCATGAACAACAGCATCTTAGGGCTTCAAGACATTGTTATCCTGAACCACAAGGGGTTTTCCTCACCTGGGATACGCCAATAATATTGCTACTAAAGCCATGTACCACCAAGAATCAAGAAGACCTTACTATCTCTGAATGACCAAAAAGGTAATTTGGCCGGAAAAAGGCTCAGCAAAATAGATGCTCTTAACCAGGGCCTTCCAACATCAATGTGAGAGGAATCTAACATGGAATACCAAAAAGAGGGGCCAAACATTACATACTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE SRSF protein kinase 1 CMGC SRPK Q96SB4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2506 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 213 TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69788141:+ chr2:69871557-70054244:+ chr2:70015273:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73297285:- chr14:73741815-73925323:- chr14:73763993:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Annexin(4%)|NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(69%) Annexin(0%)|NumbF(100%),PID(14%),PID_2(14%),PTB(14%) 119 84 76 20235 644 ENST00000394295.6 ENST00000554546.5 downstream downstream duplicates(24),low_entropy(4),mismatches(7) GCAGAGGAGGAGCGCAGCCCGGCCTCG___AAGAACTTCTGCTTGGGTGGCTGAACTCTGATCTTGACCTAGAGTCATGGCCATG___GCAACCAAAGGAGGTACTGTCAAAGCTGCTTCAGGATTCAATGCCATGGAAGATGCCCAGACCCTGAGGAAGGCCATGAAAGGGCTCG|ACTGGAAAGAAAGCAGTTAAAGCAGTTCTGTGGGTCTCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAG___GACCTCATAGTTGACCAGACGATAGAGAAAGTTTCTTTCTGTGCCCCAGACAGGAACTTTGATAGAGCCTTTTCTTACATATGCCG MAMATKGGTVKAASGFNAMEDAQTLRKAMKGL|dwkess* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2507 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 214 TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69781574:+ chr2:69871557-70054244:+ chr2:70008706:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73297285:- chr14:73741815-73925323:- chr14:73763993:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(69%) |NumbF(100%),PID(14%),PID_2(14%),PTB(14%) 17 59 13 19081 644 ENST00000394295.6 ENST00000554546.5 downstream downstream duplicates(6),low_entropy(5),mismatches(7) ACCTCCGCAGCCGCAGAGGAGGAGCGCAGCCCGGCCTCG___AAGAACTTCTGCTTGGGTGGCTGAACTCTGATCTTGACCTAGAGTCATGGCCATG|ACTGGAAAGAAAGCAGTTAAAGCAGTTCTGTGGGTCTCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAG___GACCTCATAGTTGACCAGACGATAGAGAAAGTTTCTTTCTGTGCCCCAGACAGGAACTTTGATAGAGCCTTTTCTTACATATGCCGTGATGGCACCACTCGTCGCTGGATCTGTCACTGCTTCATGGCTGTCAAGG MAM|TGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2508 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69788141:+ chr2:69871557-70054244:+ chr2:70015273:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73292825:- chr14:73741815-73925323:- chr14:73759533:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Annexin(4%)|NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(38%) Annexin(0%)|NumbF(100%),PID(8%),PID_2(8%),PTB(8%) 0 1 20 20235 829 ENST00000394295.6 ENST00000554546.5 downstream downstream duplicates(1),mismatches(1) AGAGGAGGAGCGCAGCCCGGCCTCG___AAGAACTTCTGCTTGGGTGGCTGAACTCTGATCTTGACCTAGAGTCATGGCCATG___GCAACCAAAGGAGGTACTGTCAAAGCTGCTTCAGGATTCAATGCCATGGAAGATGCCCAGACCCTGAGGAAGGCCATGAAAGGGCTCG|ACAGGAACTTTGATAGAGCCTTTTCTTACATATGCCGTGATGGCACCACTCGTCGCTGGATCTGTCACTGCTTCATGGCTGTCAAGGACACA___GGTGAAAGGTTGAGCCATGCAGTAGGCTGTGCTTTTGCAGCCTGTTTAGAGC MAMATKGGTVKAASGFNAMEDAQTLRKAMKGL|dRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2509 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69742175:+ chr2:69871557-70054244:+ chr2:69969307:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73297285:- chr14:73741815-73925323:- chr14:73763993:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(69%) |NumbF(100%),PID(14%),PID_2(14%),PTB(14%) 0 0 0 7899 644 ENST00000394295.6 ENST00000554546.5 downstream downstream mismatches(1) CCGCAGCCGCAGAGGAGGAGCcCAGCagGGCCTCG|ACTGGAAAGAAAGCAGTTAAcGCAGTTCTGTGGGTCTCAGCAGATGGACTCAGAGTTGTGGtTG...CACTTTTACAAGAGAAGGATCATTCCGTGTCACAACAGCCACTGAACAAGCAGAAAGAGAGGAGATCATGAAACAAATGCAAGATGCCAAGAAAG___CTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2511 MSH5::PRRC2A ENSG00000204410.16::ENSG00000204469.13 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 421 FALSE NA MSH5 ENSG00000204410.16 protein_coding + + chr6:31739677-31762676:+ chr6:31744581:+ chr6:31707454-31730453:+ chr6:31712358:+ PRRC2A ENSG00000204469.13 protein_coding + + chr6:31620715-31637771:+ chr6:31637042:+ chr6:31588492-31605548:+ chr6:31604819:+ chr6:31746454,chr6:31746804,chr6:31746451 chr6:31636659,chr6:31636659,chr6:31636653 NA NA chr6:31714231,chr6:31714581,chr6:31714228 chr6:31604436,chr6:31604436,chr6:31604430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none MutS_domain_III(0%)| MutS_III(0%)| 2 0 2 377 788 ENST00000375755.8 ENST00000376033.3 downstream upstream mismatches(1) GAAGAAGAATCGGGGTTGAACTGGAAGACTATAATGTCAGCGTCCCCATCCTGGGCTTTAAGAAATTTATGTT___GACTCATCTGGTGAACATAGATCAAGACACTTACAG|CTGCATCCAGTGGAACTAAAGCCGTTCCAGGATTATCAAAAACTGAGCAGCAACCTTGGGGGACCTGGATCATCACGGACTCCCCCAACTGGAAG___GTCCTTCTCTGGCCTCAATTCCCGTCTCAAGGC RRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYs|ciqwn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2514 MSH5-SAPCD1::PRRC2A ENSG00000255152.8::ENSG00000204469.13 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 422 FALSE NA MSH5-SAPCD1 ENSG00000255152.8 protein_coding + + chr6:31740020-31764851:+ chr6:31744581:+ chr6:31707797-31732628:+ chr6:31712358:+ PRRC2A ENSG00000204469.13 protein_coding + + chr6:31620715-31637771:+ chr6:31637042:+ chr6:31588492-31605548:+ chr6:31604819:+ chr6:31746454,chr6:31746804,chr6:31746451 chr6:31636659,chr6:31636659,chr6:31636653 NA NA chr6:31714231,chr6:31714581,chr6:31714228 chr6:31604436,chr6:31604436,chr6:31604430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none MutS_III(0%)| 2 0 0 377 788 ENST00000493662.6 ENST00000376033.3 downstream upstream mismatches(1) GAAGAAGAATCGGGGTTGAACTGGAAGACTATAATGTCAGCGTCCCCATCCTGGGCTTTAAGAAATTTATGTT___GACTCATCTGGTGAACATAGATCAAGACACTTACAG|CTGCATCCAGTGGAACTAAAGCCGTTCCAGGATTATCAAAAACTGAGCAGCAACCTT RRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYs|ciqwn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2516 GTPBP3::ANO8 ENSG00000130299.17::ENSG00000074855.11 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GTPBP3 ENSG00000130299.17 protein_coding + + chr19:17334920-17342731:+ chr19:17339599:+ chr19:17445729-17453540:+ chr19:17450408:+ ANO8 ENSG00000074855.11 protein_coding - + chr19:17323223-17334855:- chr19:17332272:+ chr19:17434032-17445664:- chr19:17443081:+ chr19:17339761,chr19:17339737 chr19:17331957,chr19:17331931 NA NA chr19:17450570,chr19:17450546 chr19:17442766,chr19:17442740 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none 50S_ribosome-binding_GTPase(59%),GTP-binding_protein_TrmE_N-terminus(100%),MnmE_helical_domain(54%)| MMR_HSR1(19%),MnmE_helical(32%),TrmE_N(100%)| 4 2 2 250 64 ENST00000361619.9 unknown downstream upstream mismappers(1) TGCACATCTACGAGATGCCAGGCGCGGGCAGAGGCTCCGCTCAGGGGcGCACGTAGTGGTCACTGGACCCCCCAATGCGGGCAAGAGCAGCCTAGTGAACCTGCTCA___GTCGGAAGCCTGTGTCCATCGTGTCCCCGGAGCCAGGGACCACCCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTCCTGTGCTGCTGAGCGACACGGCTGGGTTGCGGGAGGGCGTGGGGCCCGTGGAGCAGGAGGGCGTGCGGCGCGCCCGGGAGAG|GGTCTCGCTCTGTCACCCAGGCTGGACAGAATGCAGTGGCGCTACCATGGCTCACTGCAACCTCGAACTCCTGGGCTCAAGTGATGCTACCGCCTGGACCTCCCAAAGTACT AHLRDARRGQRLRSGaHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAREr|vslchpgwtecsgatmahcnlellgssdatawtsqs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2519 SMKR1::ADAP1 ENSG00000240204.3::ENSG00000105963.15 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMKR1 ENSG00000240204.3 protein_coding + + chr7:129502531-129512918:+ chr7:129502827:+ chr7:129142372-129152759:+ chr7:129142668:+ ADAP1 ENSG00000105963.15 protein_coding - - chr7:897900-955407:- chr7:935505:- chr7:937537-995043:- chr7:975141:- chr7:129504859,chr7:129504856 chr7:935806,chr7:935809 NA NA chr7:129144700,chr7:129144697 chr7:975442,chr7:975445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |PH_domain(100%),Putative_GTPase_activating_protein_for_Arf(80%) |ArfGap(43%),PH(100%) 0 4 0 126 197 ENST00000462322.3 ENST00000539900.5 downstream downstream none GGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATG|ATCCCGACTGGGCCTCCTACACTCTGGGCGTCTTCATCTGCCTGAGCTGCTCGGGAATCCACCGGAATATCCCCCAGGTCAGCAAGGTGAAGTCCGTCCGCCTGGACGCCTG...TTCTACTACCGGCCCACGCCCTCCGACTGCCA___GCTCCTTCGAGAGCAGTGGATCCGGGCCAAGTACGAGCGACAGGAGTTCATCTACCCGGAGAAGCAGGA...ACCGTGAGGGTTTTCTCTGGAAGCGTGGCCGGGACAACGGGCAGTTTTTGAGCCGGAAGTTTGTGCTGACAGAACGAGAGGGTGCTCTGAAGTATTTCAAC M|iptgpptlwasssa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2520 SMKR1::COX19 ENSG00000240204.3::ENSG00000240230.6 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMKR1 ENSG00000240204.3 protein_coding + + chr7:129502531-129512918:+ chr7:129502827:+ chr7:129142372-129152759:+ chr7:129142668:+ COX19 ENSG00000240230.6 protein_coding - - chr7:898778-975549:- chr7:935505:- chr7:938415-1015185:- chr7:975141:- chr7:129504859,chr7:129504856 chr7:935806,chr7:935809 NA NA chr7:129144700,chr7:129144697 chr7:975442,chr7:975445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none |ArfGap(43%),PH(100%) 0 4 0 126 197 ENST00000462322.3 ENST00000457254.5 downstream downstream none GGGAGAGTCCACCACGCCTGCCTGCTCGGCTGAGAATCGCCATG|ATCCCGACTGGGCCTCCTACACTCTGGGCGTCTTCATCTGCCTGAGCTGCTCGGGAATCCACCGGAATATCCCCCAGGTCAGCAAGGTGAAGTCCGTCCGCCTGGACGCCTG...TTCTACTACCGGCCCACGCCCTCCGACTGCCA___GCTCCTTCGAGAGCAGTGGATCCGGGCCAAGTACGAGCGACAGGAGTTCATCTACCCGGAGAAGCAGGA...ACCGTGAGGGTTTTCTCTGGAAGCGTGGCCGGGACAACGGGCAGTTTTTGAGCCGGAAGTTTGTGCTGACAGAACGAGAGGGTGCTCTGAAGTATTTCAAC M|iptgpptlwasssa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2522 MINK1::CXCL16 ENSG00000141503.17::ENSG00000161921.17 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MINK1 ENSG00000141503.17 protein_coding + + chr17:4833340-4898061:+ chr17:4881257:+ chr17:4736635-4801356:+ chr17:4784552:+ CXCL16 ENSG00000161921.17 protein_coding - + chr17:4733533-4739928:- chr17:4735135:+ chr17:4636828-4643223:- chr17:4638430:+ chr17:4883520 chr17:4734041 NA NA chr17:4786815 chr17:4637336 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Protein_kinase_domain(29%)| ABC1(0%),PK_Tyr_Ser-Thr(35%),Pkinase(35%)| 2 1 1 692 161 ENST00000355280.11 unknown downstream upstream mismatches(1) GCGCGGTGGAGTCCGCCCCCGGGGTTCTCCGATGGGGGAGAAGCGGCGACGGCGGCAGTGGAGTAACCGAGCCGGAGCGTGAGCGGCCCCGGTGCCCCGTT...GATGTCACGGAG___GACGAGGAGGAAGAGATCAAACAGGAGATCAACATGCTGAAAAAGTACTCTCACCACCGCAACATCGCCACCTACTACGGAGCCTTCATCAAGAAGAGCCCCCCGGGAAACGATGACCAGCTCTGG|CACATAGGAAAGGGCTGCGGTGAGGATGAAGATGATGGCCAGGAGGCACAGGACcGGCACTGTGGCTGATGgCCTGGCTGTGGGACCAGCtTTTTTTTCCGGCTGCTTCTGGTTCTCCCCAGCCTCAGGCCCAGCTGCCAGACTGTGGCCCGCAGTGTGAATGGTGGTTTCATTGGGACGAGTGAGCTCTTTGTCCGAG DVTEDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKSPPGNDDQLW|higkgcgededdgqeaqdrhcg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Misshapen-like kinase 1 STE STE20 MSN Q8N4C8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2530 CTNNA1::SIL1 ENSG00000044115.21::ENSG00000120725.13 SNU407 SRR8615317 SRR8670766 LARGE_INTESTINE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA1 ENSG00000044115.21 protein_coding + + chr5:138610967-138935034:+ chr5:138925407:+ chr5:137946656-138270723:+ chr5:138261096:+ SIL1 ENSG00000120725.13 protein_coding - + chr5:138946724-139293557:- chr5:139157000:+ chr5:138282413-138629246:- chr5:138492689:+ chr5:138925842,chr5:138925840 chr5:139152728,chr5:139152723 NA NA chr5:138261531,chr5:138261529 chr5:138488417,chr5:138488412 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Vinculin_family(72%)| LRR_5(100%),LRR_8(100%),Vinculin(92%)| 8 12 85 164 69 ENST00000627109.2 unknown downstream upstream duplicates(7),low_entropy(1),mismappers(13),mismatches(13),multimappers(1) TCACGTAGTCACCTCAGAGATGGACAACTATGAGCCAGGAGTCTACACAGAGAAGGTTCTGGAAGCCACTAAGCTGCTCTCCAACACAG___TCATGCCACGTTTTACTGAGCAAGTAGAAGCAGCCGTGGAAGCCCTCAGCTCGGACCCTGCCCAGCCCATGGATGAGAATGAGTTTATCGATGCTTCCCGCCTGGTATATGATGGCATCCGGGACATCAGGAAAGCAGTGCTGATGATAAGG|CCTCCCCAAGCCAGACTTGTCCACTATCTGATGGGTGACCCTGCCAAGAATTGAAGCAATCAGCACTGACAGCTCCTCTGCTGCAAAGCCTTCTCATGAGCCTCTCCTTTCTCCCACCAACATCACTGCAAAAGCTTATCAGAGACTGAATTATCTTCTTGATGTTCTAATTATCAGGTGTGGAGAGAAATAGTCCAGAATCTATCATCCACAAGAGGAAGTAAATCAAACTGTCTAACAAAGGTTTTCATCTAATTTTTTGTTTGTACTTGTTTTTCCAATCACTGAGAAGCTCCTAACCTTTGTTGGTCTGCTCCATCCTGCCCACAATTTCTCCTTTCCCACAGAGACATGTTTGGAAGGTATCAGACCACGAGTAATTCAGTTTCCTC HVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLMIR|ppqarlvhylmgdpakn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Catenin Alpha 1 2 AML, MDS, cutaneous melanoma gastric cancer Hereditary Diffuse Gastric Cancer Syndrome epithelial, leukaemia_lymphoma TSG, fusion large_deletion, missense, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 2549 ARHGEF38::GSTCD ENSG00000236699.9::ENSG00000138780.15 SNU407 SRR8615317 SRR8670766 LARGE_INTESTINE carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF38 ENSG00000236699.9 protein_coding + + chr4:105552620-105708093:+ chr4:105659365:+ chr4:106473777-106629250:+ chr4:106580522:+ GSTCD ENSG00000138780.15 protein_coding + + chr4:105708778-105847725:+ chr4:105822954:+ chr4:106629935-106768882:+ chr4:106744111:+ chr4:105664020,chr4:105664018,chr4:105664021 chr4:105775618,chr4:105775618,chr4:105775616 NA NA chr4:106585177,chr4:106585175,chr4:106585178 chr4:106696775,chr4:106696775,chr4:106696773 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none RhoGEF_domain(100%)|Methyltransferase_domain(100%) RhoGEF(100%)|GidB(100%),Methyltransf_31(100%),Methyltransf_32(100%) 3 1 3 49 62 ENST00000420470.3 ENST00000394730.7 downstream upstream none GTAGTATTTCAAGAATTATAGAGAAGATAGACTGATCATCTTGAAAGTGGCATTTTCGTGTTGGCATTATAGGCATTTTGG___GCATCTCACTTACAGAGACT...CAACGCCCAGCTTGTGGAGGAGCTCCAGGCATTCAACCAGGCTGCTCGGAAGATTCTGTTGAACTGTCTATGCAGCTTCATTACCCTCCTTAGGGACCTGATGCTCGTGGCACAGCAGGCTTACTCCACACTTGTGCCG|GTAAAATGTCCAGTGATCGAGCTTTGAGGAAGCAGCAACAGTTGAACAACCTTGTCTATGTGGTAACAAATCAGGCCAAACCTGGTGACAGAATTGTGGATTTCTGCAGCG___GGCCATGTTGGAATTGTCCTTGCTCACATGCTGCCATCATGTCAG___GTTACATTAATAGAAAACAAGGAATTATCATTAATT NAQLVEELQAFNQAARKILLNCLCSFITLLRDLMLVAQQAYSTLVP|vkcpviel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2575 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 217 TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22429014:+ chr1:22755331-22857650:+ chr1:22755507:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325360:+ chr1:35734310-35887659:+ chr1:35790961:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) |DUF3504(100%),zf-FCS(100%) 5 59 20 82 362 ENST00000650433.1 ENST00000314607.11 downstream upstream duplicates(26),mismatches(3) AGAAAGAGTTCCTTTCTTTCTTCTTTCCAGTTACCTCCTTCTTGCCGGTTGGAATATTGGATTGAAAGGTCAGAGCCATGTGCTGAGGTTGGGGAAACATCCCGGATGCCAGCCCCGGACTGCTA|TTTGAACAAAAAAGTGGTGCAGTTTTTGATGAAATTGTAGAGAACT___GTGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2576 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 218 TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22452004:+ chr1:22755331-22857650:+ chr1:22778497:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325360:+ chr1:35734310-35887659:+ chr1:35790961:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) |DUF3504(100%),zf-FCS(100%) 2 9 33 57 362 ENST00000404138.5 ENST00000314607.11 downstream upstream duplicates(16),mismatches(3) CCTCAAGATGGCCGCCTTCTGGCGTCTCCGGCGCTGTTGAATGGCGAAAGCTTTATTGTTCCCTTCGGGCAGGAGTGTTCGTGTCCTCTATGGaGCTGTCAATAAAGAACGGCAGTTTGAATCGGTGCTGAACAG|TTTGAACAAAAAAGTGGTGCAGTTTTTGATGAAATTGTAGAGAACT___GTGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2577 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22429014:+ chr1:22755331-22857650:+ chr1:22755507:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35358925:+ chr1:35734310-35887659:+ chr1:35824526:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) |DUF3504(100%),zf-FCS(100%) 0 4 18 82 371 ENST00000650433.1 ENST00000314607.11 downstream upstream duplicates(4),mismatches(1) GCAATATTCTTGAAAAGAAAGAGTTCCTTTCTTTCTTCTTTCCAGTTACCTCCTTCTTGCCGGTTGGAATATTGGATTGAAAGGTCAGAGCCATGTGCTGAGGTTGGGGAAACATCCCGGATGCCAGCCCCGGACTGCTA|GTGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAATTCATACTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACACAGCATGAATCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2578 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22429014:+ chr1:22755331-22857650:+ chr1:22755507:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35381259:+ chr1:35734310-35887659:+ chr1:35846860:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(75%) |DUF3504(100%),zf-FCS(10%) 0 1 0 82 439 ENST00000650433.1 ENST00000314607.11 downstream upstream none CAGAGCCATGTGCTGAGGTTGGGGAAACATCCCGGATGCCAGCCCCGGACTGCTA|AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAAC...CACCACTAGTAAAGATTTTTGCAGTCAGTCATGTTTGTCAACATATGAACTGAAAAAAAAACCTATTGTTACCATAAATACAAATAGTATTTCAACCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2579 CUX1::PCBP1-AS1 ENSG00000257923.12::ENSG00000179818.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102158608:+ chr7:101459184-101927250:+ chr7:101801888:+ PCBP1-AS1 ENSG00000179818.17 lncRNA - + chr2:69960104-70103220:- chr2:70076088:+ chr2:70187236-70330352:- chr2:70303220:+ chr7:102158946,chr7:102158947 chr2:70065603,chr2:70065601 NA NA chr7:101802226,chr7:101802227 chr2:70292735,chr2:70292733 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 35 13 33 617 66 ENST00000437600.9 unknown downstream upstream duplicates(12),mismatches(3) TCTCGGACAGCAACTCCAGCTCAAAGTGCAGCGCCTGCACGATATTGAAACAGAGAACCAGAAACTTAGGGAAACTCTGGAAGAATACAACAAGGAATTTGCTGAAGTGAAAAATCAAG___AGGTTACGATAAAAGCACTTAAAGAGAAAATCCGAGAATATGAACAGACACTGAAGAACCAAGCCGAAACCATAGCTCTTGAGAAGGAACAGAAGTTACAGAATGACTTTGCAGAAAAGGAGAG___AAAGCTGCAGGAGACACAGATGTCCACCACCTCAAAGCTGGAGGAAGCTGAGCATAAGGTTCAGAGCCTACAAACAG___CCCTGGAAAAAACTCGAACAGAATTATTTGACCTGAAAACCAAATACGATGAAGAAACTACTGCAAA___GGCCGACGAGATTGAAATGATCATGACGGACCTTGAAAGGGCAAACCAG|GGAAGAATCAATTCAGAGAATAATCGAGGCACATGCTACACTGATAAGATGCTTAAGATCACAATGAAGGTTAG___ATAAGGTCTCACTCTGTTGTCCGGACTGAAGTGCAGTGACGCGATC LGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTDLERANQ|grinsennrgtcytdkmlkitmkvr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 2586 SLC30A7::UROC1 ENSG00000162695.12::ENSG00000159650.9 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 219 TRUE 431 FALSE NA SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100921841:+ chr1:101361632-101447313:+ chr1:101387397:+ UROC1 ENSG00000159650.9 protein_coding - - chr3:126481166-126517773:- chr3:126496108:- chr3:126200009-126236616:- chr3:126214951:- chr1:100961233,chr1:100961248,chr1:100961250,chr1:100961272 chr3:126498099,chr3:126498099,chr3:126498099,chr3:126498099 NA NA chr1:101426789,chr1:101426804,chr1:101426806,chr1:101426828 chr3:126216942,chr3:126216942,chr3:126216942,chr3:126216942 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Cation_efflux_family(94%)|Urocanase_C-terminal_domain(80%) Cation_efflux(38%)|Urocanase_C(86%) 21 4 18 178 18 ENST00000370112.8 ENST00000290868.7 downstream downstream duplicates(5) TCAGGCACATGGCCATGTCGATCATTGCCATAGCCATGAAGTGAAACATGGTGCTGCACATAGCCATGATCATGCTCATGGACATGGACACTTTCATTCTCATG___ATGGCCCGTCCTTAAAAGAAACAACAGGACCCAGCAGACAGATTTTACAAG___GTGTATTTTTACATATCCTAGCAGATACACTTGGAAGTATTGGTGTAATTGCTTCTGCCATCATGATGCAAAATTTTGGTCTGATGATAGCAGATCCTATCTGTTCAATTCTTATAGCCATTCTTATAGTTGTAAG|TGAAGGTGTCTGTGAAGCTGCAGTACATGGACAACATCCGCTGGATCCGGGAGGCCGCCAGGCACCGGCTGGTGAGGGCCCAGGCCTG...___GTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAGGGCCGCGTGGCCATCGCTGTGGCCATTAACCAGGCCATCGCCTGCAGGAGGATCAAG___GCGCC QAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVs|egvceaavhgqhpldpggrqapagegpg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2588 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 220 TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38379342:+ chr3:38388251-38462839:+ chr3:38420833:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37361243:+ chr3:37284682-37408370:+ chr3:37402734:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FGGY_family_of_carbohydrate_kinases__C-terminal_domain(73%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(100%)| FGGY_C(21%),FGGY_N(100%)| 5 12 26 134 446 ENST00000650590.1 ENST00000361924.7 downstream upstream duplicates(8),mismatches(1) GCAACGGTGGAAACCTGG___GTTTTTATTTTGATGTAATGGAGATCACCCCTGAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAAG___GTTGCAGCATTCCCTGGGGATGTGGAGGTTCGAGCACTAATTGAAGGACAATTCATGGCCAAGAGGATTCACGCAGAAGGCCTGGGCTATCGAGTCA|TTTACTTCACCTCGCAGTGGTATCTTCTGAGTAAACCATCAGTCTGTGCTTAGTTAACATGTG___TCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTGCTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTCAGGGCCCCTCATGTAGCCAAAAGACCAAGAAAAATCTGGCCCACAGATAAGTTGCAG...TTTAAAATAGATTTTATCAGTGGAGAAATGGTGATAGTTTTTTCTTCAGTTTTCTCTTGGGAAGAGTTTTATGTTGTTTAAAAGATATTTTGATAACTTAA NGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRV|iyftsqwyllskpsvca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2589 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 221 TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38379342:+ chr3:38388251-38462839:+ chr3:38420833:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37366080:+ chr3:37284682-37408370:+ chr3:37407571:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FGGY_family_of_carbohydrate_kinases__C-terminal_domain(73%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(100%)| FGGY_C(21%),FGGY_N(100%)| 2 5 21 134 783 ENST00000650590.1 ENST00000706569.1 downstream upstream duplicates(8),mismatches(2) GCAACGGTGGAAACCTGG___GTTTTTATTTTGATGTAATGGAGATCACCCCTGAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAAG___GTTGCAGCATTCCCTGGGGATGTGGAGGTTCGAGCACTAATTGAAGGACAATTCATGGCCAAGAGGATTCACGCAGAAGGCCTGGGCTATCGAGTCA|TCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTGCTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTCAGGGCCCCTCATGTAGCCAAAAGACCAAGAAAAATCTGGCCCACAGATAAGTTGCAGACTGCCTTTAAAATAGATTTTATCAGTGGAGAAATGGTGATAGTTTTTTCTTCAGTTTTCTCTTGGGAAGAGTTTTATGTTGTTTAAAAGATATTTTGATAACTTAACCTGCTTTATG NGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRV|imapifilkksdig* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2590 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38376991:+ chr3:38388251-38462839:+ chr3:38418482:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37361243:+ chr3:37284682-37408370:+ chr3:37402734:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FGGY_family_of_carbohydrate_kinases__C-terminal_domain(55%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(100%)| FGGY_C(10%),FGGY_N(100%)| 1 1 14 139 446 ENST00000650590.1 ENST00000361924.7 downstream upstream duplicates(2),mismatches(1) AAAGTCTGGTCCCAGGCTTGCCTTGGTGCCTGTGCACCTCATTTAGAGGAGAAGCTTAGCCCACCAGTACCATCATGCTCAGTTGTG___GGAGCCATTTCTTC...CCGCAACGAGTCTGTATCCCGTTCCTGGAGCGATTTCTCTAAGGCACTGCAGTCCACAGAGATGGGCAACGGTGGAAACCTGG___GTTTTTATTTTGATGTAATGGAGATCACCCCTGAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAAG|TTTACTTCACCTCGCAGTGGTATCTTCTGAGTAAACCATCAGTCTGTGCTTAGTTAACATGTG___TCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTGCTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAG...GTTTTATGTTGTTTAAAAGATATTTTGATAACTTAACCTGCTTTATGGGCTTACATAATATTCCTTTCATCCATTCTTTTTAAAGAACGGCTTACCTTTCC RNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHK|FTSPRSGIF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2591 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38376991:+ chr3:38388251-38462839:+ chr3:38418482:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37366080:+ chr3:37284682-37408370:+ chr3:37407571:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FGGY_family_of_carbohydrate_kinases__C-terminal_domain(55%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(100%)| FGGY_C(10%),FGGY_N(100%)| 1 1 11 139 783 ENST00000650590.1 ENST00000706569.1 downstream upstream duplicates(1) GACACCCTGTTTCTCTGGCTCCAAGAGCCCATGCCTGCCCTGGAAGGCCACATCTTCTGCAACCCGGTTGACTCCCAGCACTACATGGCACTCCTGTG___CTT...CCGCAACGAGTCTGTATCCCGTTCCTGGAGCGATTTCTCTAAGGCACTGCAGTCCACAGAGATGGGCAACGGTGGAAACCTGG___GTTTTTATTTTGATGTAATGGAGATCACCCCTGAAATTATTGGACGTCATAGGTTTAACACAGAAAACCACAAG|TCATGGCTCCGATCTTCATCTTGAAGAAGAGTGACATTGGGTGACTGCTGCTTGGAAAACTGTCCACACTTGCTACTCTTTGAGAATGAAGTTGTCATTCAGGGCCCCTCATGTAGCCAAAAGACCAAGAAAAATCTGGCCCACAGATAAGTTGCAGACTGCC...TATCAGTGGAGAAATGGTGATAGTTTTTTCTTCAGTTTTCTCTTGGGAAGAGTTTTATGTTGTTTAAAAGATATTTTGATAACTTAACCTGCTTTATGGGC RNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHK|SWLRSSS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2592 GPC6::GPC5 ENSG00000183098.12::ENSG00000179399.16 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 433 TRUE 153 GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:93545421:+ chr13:93879060-95060274:+ chr13:94197674:+ GPC5 ENSG00000179399.16 protein_coding + + chr13:91398621-92873682:+ chr13:92866282:+ chr13:92050875-93525935:+ chr13:93518535:+ chr13:93667634 chr13:92302031 NA NA chr13:94319887 chr13:92954284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Glypican(16%)|Glypican(8%) Glypican(27%)|Glypican(0%) 8 8 24 292 43 ENST00000377047.9 ENST00000377067.9 downstream upstream duplicates(10),mismappers(2),mismatches(3) GGCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTCGGAGCTGCGGAGAGGTCCGCCAGGCGTACGGTGCCAAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGATCGCAG___GGGAACACTTAAGAATCTGTCCTCAGGAATATACATGCTGCACCACAGAAATGGAAGACAAGTTAAGCCAACAAAGCAAACTCGAATTTGAAAACCTTGTGGAAGAGACAAGCCATTTTGTGCGCACCACTTTTGTGTCCAGGCATAAGAAATTTGACG|GGATGCCAGATGATATGAACTTCAGTGATGTAAAGCAAATCCATCAAACAGACACTGGCAGTACTTTAGACACAACAGGAGCAGGATGTGCAGTGGCGACTGAATCTATGACATTCACTCTGATAAGTGTGGTGATGTTACTTCCCGGGATTTGGTAACTGAACTCTTCTGTCCTGACATACCTTACTGAAGTCTCGATTTCTTCTCTCTCTGCATATGCCTGGAATAAGAGATCCTTTTTCAATGTAACAATTATATTTATGAAAAGAT LLLSLPAGADVKARSCGEVRQAYGAKGFSLADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFD|gMPDDMNFSDVKQIHQTDTGSTLDTTGAGCAVATESMTFTLISVVMLLPGIW* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Liver hepatocellular carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma,Cholangiocarcinoma KIDNEY,LIVER,HEAD_AND_NECK,PROSTATE,LIVER,UTERUS,BILE_DUCT no_match 93879869,93879869,93879869,93879869,93879869,94482798,93879869 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 93518535,93518535,93518535,93518535,93518535,93518535,92797083 TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE YES,PARTIALLY,PARTIALLY,YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE glypican 5 2 lung adenocarcinoma epithelial TSG large_deletion 2593 GPC6::GPC5 ENSG00000183098.12::ENSG00000179399.16 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 433 TRUE 153 GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:93227616:+ chr13:93879060-95060274:+ chr13:93879869:+ GPC5 ENSG00000179399.16 protein_coding + + chr13:91398621-92873682:+ chr13:92866282:+ chr13:92050875-93525935:+ chr13:93518535:+ chr13:93667634 chr13:92302031 NA NA chr13:94319887 chr13:92954284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Glypican(6%)|Glypican(8%) Glypican(0%)|Glypican(0%) 0 1 4 233 43 ENST00000377047.9 ENST00000377067.9 downstream upstream mismatches(1) TTTGTATGTTGCACCATGCCTTCTTGGATCGGGGCTGTGATTCTTCCCCTCTTGGGGCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTCGGAGCTGCGGAGAGGTCCGCCAGGCGTACGGTGCCAAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGAgCGCAG|GGATGCCAGATGATATGAACTTCAGTGATGTAAAGCAAATCCATCAAACAGACACTGGCAGTACTTTAGACACAACAGGAGCAGGATGTGCAGTGGCGACTGAATCTATGACATTCACTCTGATAAGTGTGGTGATGTTACTTCCCGGGATTTGGTAACTGAACTCTTCTGTCCTGACATACCTTACTGAAGTCTCGATTTCTTCTCTCTCTGCATATGCCTGGAATAAG MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSLADIPYQEsA|gMPDDMNFSDVKQIHQTDTGSTLDTTGAGCAVATESMTFTLISVVMLLPGIW* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Liver hepatocellular carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma,Cholangiocarcinoma KIDNEY,LIVER,HEAD_AND_NECK,PROSTATE,LIVER,UTERUS,BILE_DUCT no_match 93879869,93879869,93879869,93879869,93879869,94482798,93879869 TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE 93518535,93518535,93518535,93518535,93518535,93518535,92797083 TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,FALSE YES,PARTIALLY,PARTIALLY,YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE glypican 5 2 lung adenocarcinoma epithelial TSG large_deletion 2594 GPC5::GPC6 ENSG00000179399.16::ENSG00000183098.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPC5 ENSG00000179399.16 protein_coding + + chr13:91398621-92873682:+ chr13:91448922:+ chr13:92050875-93525935:+ chr13:92101176:+ GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:94286349:+ chr13:93879060-95060274:+ chr13:94938603:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none Glypican(17%)|Glypican(47%) Glypican(3%)|Glypican(9%) 0 1 0 13 213 ENST00000377067.9 ENST00000377047.9 downstream upstream none AAGTTTCTAATATCTCGAAAaGCGGCTGCTTTTCAAG|ATGCAATGCTCTTGGTGGCAGAGCGACTGGAGGGGCCATTCAACATTGcaTCGGTCATGG...CCCTCAGATCTGCCCGCTCAGCTCCTGAAAATTTTAATACACGTTTCAGGCCCTACAATCCTGAGGAAAGACCAACAACTGCTGCAGGCACAAGCTTGGAC KFLISRkAAAFQ|dAMLLVAERLEGPFNIaSVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE glypican 5 2 lung adenocarcinoma epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 2596 CLASP1::NRCAM ENSG00000074054.21::ENSG00000091129.22 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 434 TRUE 154 CLASP1 ENSG00000074054.21 protein_coding - - chr2:121337776-121649476:- chr2:121605701:- chr2:122095352-122407052:- chr2:122363277:- NRCAM ENSG00000091129.22 protein_coding - - chr7:108147623-108456717:- chr7:108312731:- chr7:107788068-108097161:- chr7:107953175:- chr2:121567977,chr2:121567980 chr7:108378519,chr7:108378519 NA NA chr2:122325553,chr2:122325556 chr7:108018963,chr7:108018963 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Bravo-like_intracellular_region(100%),Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) |Bravo_FIGEY(100%),I-set(100%),Ig_2(100%),Ig_3(100%),fn3(100%),ig(100%) 7 9 16 212 100 ENST00000263710.8 ENST00000351718.8 upstream downstream duplicates(9) GTCCTGCCTGGCGCAGGTGTTGCAGAAGGATGTGGGGAAACGATTGCAGGTTGGCCAAGAACTGATAGACTATTTCTCAGACAAACAGAAGTCTGCTGACCTTGAGCATGACCAGACCATGTTAGATAAACTTGTGGATGGACTTGCTACCTCTTGGGTGAACTCTAGCAATTACAAG|AGCAATGCTAAGAAGACGTTTGGTTTAAAGAATTAAAAGGAAGAACAACTTAAGAGCTTCTTCAAAG___TTcCCCGCATGAAAATTACTTAAACGTTGCACACAACGTTTCACAAAATCTTTTGTGAAAGAAGAAAAGGAAATTCAGTGTGTGAGTCTCAGCAGGAGTTAAGCTAATGCAGCTTAAAATAATGCCGAAAAAG...CGCTTATCTGCGGGCAGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATTAGTGCACTGGAAGTACCTCTTGATC___TGGTACAGCCTCCAACCATCACCC...ATTACATTATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAAGCCAAAGGGAAACCGCCCCCAAG___CTTTTCCTGGACCCGTAATGGGACTCATTTTGAC SCLAQVLQKDVGKRLQVGQELIDYFSDKQKSADLEHDQTMLDKLVDGLATSWVNSSNYK|snakktfglkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2597 CLASP1::NRCAM ENSG00000074054.21::ENSG00000091129.22 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 434 TRUE 154 CLASP1 ENSG00000074054.21 protein_coding - - chr2:121337776-121649476:- chr2:121649372:- chr2:122095352-122407052:- chr2:122406948:- NRCAM ENSG00000091129.22 protein_coding - - chr7:108147623-108456717:- chr7:108312731:- chr7:107788068-108097161:- chr7:107953175:- chr2:121567977,chr2:121567980 chr7:108378519,chr7:108378519 NA NA chr2:122325553,chr2:122325556 chr7:108018963,chr7:108018963 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation low none |Bravo-like_intracellular_region(100%),Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) |Bravo_FIGEY(100%),I-set(100%),Ig_2(100%),Ig_3(100%),fn3(100%),ig(100%) 0 1 0 121 100 ENST00000263710.8 ENST00000351718.8 upstream downstream mismatches(1) GCTTAACaTCATTGGGGTGGAGGAGAAGGCGGCGGCTCTCTGGTCCGCAGCGGCAACAGTAACGAAAAACAGGGCT|AGCAATGCTAAGAAGACGTTTGGTTTAAAGAATTAAAAGGAAGAACcACTTAA...TCAGTGTGTGAGTCTCAGCAGGAGTTAAGCTAATGCAGCTTAAAATAATGCCGAAAAAGAAGCGCTTATCTGCGGGCAGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATTAGTGCACTGGAAGTACCTCTTGATC___TGGTACAGCCTCCAACCATCACCCAACAGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2598 N4BP2::SLC14A2 ENSG00000078177.15::ENSG00000132874.15 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA N4BP2 ENSG00000078177.15 protein_coding + + chr4:40056797-40158252:+ chr4:40073551:+ chr4:40058417-40159872:+ chr4:40075171:+ SLC14A2 ENSG00000132874.15 protein_coding + - chr18:45212995-45683688:+ chr18:45367406:- chr18:42792960-43263653:+ chr18:42947371:- chr4:40088967,chr4:40088968 chr18:45396617,chr18:45396616 NA NA chr4:40090587,chr4:40090588 chr18:42976582,chr18:42976581 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 4 19 7 45 48 ENST00000706658.1 unknown downstream downstream duplicates(6),low_entropy(1),mismatches(1) CGCGGCCGCAGCTGCTTGCTAGCCTTGCGCGGCGCGGGAGAGCGCAGTGGCGCCGGCGGGAAAGGGCTGCGG?CCTGCGGCGCCGCGTTGTGCGTTCGACGACGCGGCACCGGCTTCGACGCCCTCTGCCCGCTCCAGAAGCAG___TAAGAAGACATGTTGGATAACAAGAAGAGGTGTAGAGTTTGCATATATCAACTGTGGCCTTAATGAGCATGTTGACAGCATCGATGCTAGACAGACA|AGTCAGCTGGTTTCTGAGAACCTAAAAACCCAGGAGAAAGATATAAGGAGGCAAGGACGCTCATTCTTCCATAACCTATAGGAAACCCAGTTTCATCATAAATATATGAAATCTCGGTAGCATCCTCCAAATCCATAAG___GGGGTAGACTGCTCTGATGAAGCACATCCAGTCCATCAGCAGCCTGAATGCTTTTGTATCAATAAGTATTCCACCAGATACCAGCTGAGCCAGTTCCCTCAATTGTGAGAGACATACTCCAG___CAAGGAAGACAACCAAGACCAAGAAGTCACAGAGTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE NEDD4 binding protein 2 2 lung cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 2599 ENSG00000267052::SLC26A3 ENSG00000267052.3::ENSG00000091138.13 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 222 TRUE 435 TRUE 155 ENSG00000267052 ENSG00000267052.3 lncRNA - - chr7:106569876-106598908:- chr7:106591550:- chr7:106210322-106239354:- chr7:106231996:- SLC26A3 ENSG00000091138.13 protein_coding - - chr7:107765467-107803225:- chr7:107779763:- chr7:107405912-107443670:- chr7:107420208:- chr7:106583354,chr7:106583356 chr7:107780153,chr7:107780152 NA NA chr7:106223800,chr7:106223802 chr7:107420598,chr7:107420597 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |STAS_domain(100%),Sulfate_permease_family(9%) |STAS(100%),Sulfate_transp(9%) 7 8 11 18 49 ENST00000650160.1 ENST00000340010.10 upstream downstream duplicates(6) CAGAG___GTTGAAATTTTTAAAAAATGAAATAGAACCACAAAGAAAATATCAGAACACATTGCACTTAGTAAAG___...CTGGAAGGAGCCAGGcTCTTGAGGACTTTATAGG___GTGATGCTGATGCACTTGGTTCCAGCGCCCTGCTTTGAGAAGCAAGACTCAAGAGAATGGGTATGGACTTGGATCTGGAGGTCTGGAAGAGAAACTGGATTCAACAGGCTTGAGGGGCtGTCTTCCTTGGACG|TCCGTCCTGGCAGCTTTAGCATTGGGAAACTTAAAGGGAATGCTGATGCAGTTTGCTGAAATAGGCAGATTGTGGCGAAAGGACAAATATGATTGT___TTAATTTGGATCATGACCTTCATCTTCACCATTGTCCTGGGACTCGGGTTAGGCCTGGCAGCTAGTGTGGCATTTCAACTGCTAACCATCGTGTTCAGGACCCAATT___TCCAAAATGCAGCACGCTGGCTAATATTGGAAGAACCAACATCTATAAGAATAAAAAAGATTATTATGAT___ATGTATGAGCCAGAAGGAGTGAAAATTTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2600 ENSG00000267052::SLC26A3 ENSG00000267052.3::ENSG00000091138.13 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 223 TRUE 435 TRUE 155 ENSG00000267052 ENSG00000267052.3 lncRNA - - chr7:106569876-106598908:- chr7:106598754:- chr7:106210322-106239354:- chr7:106239200:- SLC26A3 ENSG00000091138.13 protein_coding - - chr7:107765467-107803225:- chr7:107779763:- chr7:107405912-107443670:- chr7:107420208:- chr7:106583354,chr7:106583356 chr7:107780153,chr7:107780152 NA NA chr7:106223800,chr7:106223802 chr7:107420598,chr7:107420597 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |STAS_domain(100%),Sulfate_permease_family(9%) |STAS(100%),Sulfate_transp(9%) 1 8 2 16 49 ENST00000591803.2 ENST00000340010.10 upstream downstream duplicates(1),mismatches(1) TGACAAGTGCCTTCTGTCCTCTATTCTTTATTCGTTTTTGTACTTCACATGCTGCCTAGGGCCACACCCTTTTGGTGGTGAGTGGGGAGCTGGAAGGAGCCAGGcTCTTGAGGACTTTATAGG|TCCGTCCTGGCAGCTTTAGCATTGGGAAACTTAAAGGGAATGCTGATGCAGTTTGCTGAAATAGGCAGATTGTGGCGAAAGGACAAATATGATTGT___TTAATTTGGATCATGACCTTCATCTTCACCATTGTCCTGGGACTCGGGTTAGGCCTGGCAGCTAGTGTGGCATTTCAACTGCTAACCATCGTGTTCAGGACCCAATT___TCCAAAATGCAGCACGCTGGCTAATATTGGAAGAACCAACATCTATAAGAATAAAAAAGATTATTATGAT___ATGTATGAGCCAGAAGG...GAAAATTTTCAGATGTCCATCTCCTATCTACTTTGCAAACATTGGTTTCTTTAGGCGGAAACTTATCGATGCT___GTTGGCTTTAGTCCACTTCGAATTCTACGCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2602 DGCR2::WARS2-AS1 ENSG00000070413.20::ENSG00000231365.7 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 436 TRUE 156 DGCR2 ENSG00000070413.20 protein_coding - - chr22:19036282-19122454:- chr22:19122128:- chr22:19023795-19109967:- chr22:19109641:- WARS2-AS1 ENSG00000231365.7 lncRNA + + chr1:119140391-119275973:+ chr1:119178644:+ chr1:119683014-119818596:+ chr1:119721267:+ chr22:19105030 chr1:119175678 NA NA chr22:19092543 chr1:119718301 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 5 9 11 621 54 ENST00000537045.5 ENST00000670000.1 upstream upstream mismatches(1) CGCCATCTTGCGCGCAGCTGGAGTCGGTGCCTGAGGTTGCAGCCGAGAGTGTGCGCCAGCCCGCGGCCCAGCCGAAGCTCTTTCCCGCCGCCTCTCCGCGCCTCGCCCAGGTTCAGCcCCGCCTGACCCTCCGCTTGGCACGGTCCCCTGACCCTCAGTCCGGCCcGGTCCGGCCTcCCAGCCGCCCCGGGGACGATGAACGGAGGATAAATGGTGCCCAAGGCAGACAGCGGCGCCTTCCTGCTGCTCTTCCTGCTCGTGCTCACTGTCACCGAGCCGCTGCGGCCAG|AATCAAGGCCATCAAGCGACAGATGTTCTTACAAATGGAACACCAATTGAGTTCAACTTACAACTTCTACTGAGGACCCCTGGACCGACGTGCTGGCACTTCCCCTGGCCTAGAGAGTTCCCCTCTGAAAGACACTACAACTGCAGGGCCCCTTCTTTGCCCCTATCCAGCAGGAAGTAGCTAGAGCGGTCATCAGCCAAATTCCCAACAGCAGTTGGGGTGTCCTGTTTAGAGGGGGGATTGAGAGGTGACAGCGTGCTGGCAGCCCTCGCAACCCTCGCTTGCTCTTG MVPKADSGAFLLLFLLVLTVTEPLRP|esrpssdrcsykwntn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2603 DGCR2::WARS2-AS1 ENSG00000070413.20::ENSG00000231365.7 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 436 TRUE 156 DGCR2 ENSG00000070413.20 protein_coding - - chr22:19036282-19122454:- chr22:19122128:- chr22:19023795-19109967:- chr22:19109641:- WARS2-AS1 ENSG00000231365.7 lncRNA + + chr1:119140391-119275973:+ chr1:119262902:+ chr1:119683014-119818596:+ chr1:119805525:+ chr22:19105030 chr1:119175678 NA NA chr22:19092543 chr1:119718301 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 2 0 621 3 ENST00000537045.5 ENST00000418015.1 upstream upstream none CGAGAGTGTGCGCCAGCCCGCGGCCCAGCCGAAGCTCTTTCCCGCCGCCTCTCCGCGCCTCGCCCAGGTTCAGCcCCGCCTGACCCTCCGCTTGGCtCGGT...GCAGACAGCGGCGCCTTCCTGCTGCTCTTCCTGCTCGTGCTCACTGTCACCGAGCCGCTGCGGCCAG|ATTCAGCTTCTGATGGGGTTGCTTCTGAAAAGACCCCGGTGAG___GTGTTTTTCAGCCCTAGCTATAC...ACCTGTAATCTAGGTAATGGCTCTCACTGGAAAACAGCTGTGGCACTGGTATAGGAGCAATGAGGGGCTCACGCAGAACTCCCTGTGTGGGCTCcCCTGGC...AGCCTTCCTGTTAATGGTATGTCCACAGCACCTTCAGCCTAGCCTCTAGGTCTTCATGGAGGTGCTGCTTCAGCCAGAG___CAACTATGCTGTAAGAAG ADSGAFLLLFLLVLTVTEPLRP|dsasdgvasektpvrcfsalai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2604 PARD3::CUL2 ENSG00000148498.17::ENSG00000108094.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814876:- chr10:34398488-35104253:- chr10:35103804:- CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35101060:- chr10:35297432-35415934:- chr10:35389988:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none N-terminal_of_Par3_and_HAL_proteins(48%)|Cullin_family(100%),Cullin_protein_neddylation_domain(100%) Par3_HAL_N_term(0%)|Cullin(100%),Cullin_Nedd8(100%) 5 17 3 147 45 ENST00000545260.5 ENST00000688736.1 upstream downstream duplicates(13),low_entropy(1),mismatches(1) CGGGCCCGCCCGCGGCGGCGGCGGCATGAAAGTGACCGTGTGCTTCGGACGGACCCGGGTGGTCGTGCCGTGCGGGGACGGCCACATGAAAGTTTTCAGCCTCATCCAGCAGGCGGTGACCCGCTACCGGAAGGCCATCGCCAAG|GATAGAGGCACTCTCCATTCCTGATTGTTCCAAGGCTCAAGTGGTCAGAAATGACTGGGAAGAAGGGAGAAAAACTCAGGTGGCAAAGGACATGGACGAAAACCCATGGCGACATGGAAAGAAAACCCTGTGATATAGAGAGGAAgAGCACAGGACAGCTTATTGGGGAGAATGGAACTCTTCTGTATCCTGATTGCGGTGATGGCCACGCATGGCT___ATTTCAACACTACACTTGCACAATGTCTTTGAAACCAAGAGTAGTAGATTTTGATGAAACATGGAACAAACTTTTGACGACAATAAAAGCCGTGGTCATGTTGGAATACGTCGAAAGAGCAACATGGAATGACCG MKVTVCFGRTRVVVPCGDGHMKVFSLIQQAVTRYRKAIAK|drgtlhs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3611 chr10:35079598-35079680:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Bladder Urothelial Carcinoma,Breast invasive carcinoma BLADDER,BREAST no_match 34985246,34985246 FALSE,FALSE 35360267,35305322 FALSE,FALSE YES,YES CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2605 BIRC6::ITGA9 ENSG00000115760.16::ENSG00000144668.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 225 TRUE 437 TRUE 157 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32448928:+ chr2:32582091-32844638:+ chr2:32673996:+ ITGA9 ENSG00000144668.12 protein_coding + + chr3:37452115-37823507:+ chr3:37526026:+ chr3:37493606-37864998:+ chr3:37567517:+ chr2:32453219,chr2:32453218 chr3:37524512,chr3:37524508 NA NA chr2:32678287,chr2:32678286 chr3:37566003,chr3:37565999 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Inhibitor_of_Apoptosis_domain(100%)|Integrin_alpha(100%) BIR(100%)|Integrin_alpha(100%),Integrin_alpha2(100%) 6 4 14 155 13 ENST00000700518.1 ENST00000264741.10 downstream upstream duplicates(4),mismatches(3) TGTCATTTTTACCTGCAGCAACAACTGGTG___GTTCTGTCTATTGGTATTTTGTCTTACTGAATTATGTGAAAGATGAAGATCTGGCTGGATGCAGTACAGCTTGTGC...GTCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAG___ATATGGATTATATAGCTCACCATTTGATCCAGTCCTCTTTGATTTGGAGATGAGTGGCTCTTCTTGTAAAAATGTTTATAACAGCAGCATTGGTGTCCAGTCAGATGAAATTGATTTATCAGATGTCCTTTCAG|ATGTCACTGTTGGAGCCTTCATGTCCGACAGCGTGGTTCTTCTCAG___AGCAAGGCCTGTCATTACGGTGGATGTCTCCATCTTCCTCCCGGGCTCCATCAACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTGAACTGCCTGAACGTCACCACCTGCTTCAGCTTCCATGGCAAACACGTTCCAGGAGAGATTG___GCCTGAATTATGTTCTGATGGCTGACGTGGCCAAAAAGGAGAAGGGCCAGATGCCCAGG SRQLQDRLTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSIGVQSDEIDLSDVLS|dVTVGAFMSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTTCFSFHGKHVPGEIGLNYVLMADVAKKEKGQMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 2606 BIRC6::ITGA9 ENSG00000115760.16::ENSG00000144668.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 437 TRUE 157 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32448928:+ chr2:32582091-32844638:+ chr2:32673996:+ ITGA9 ENSG00000144668.12 protein_coding + + chr3:37452115-37823507:+ chr3:37533314:+ chr3:37493606-37864998:+ chr3:37574805:+ chr2:32453219,chr2:32453218 chr3:37524512,chr3:37524508 NA NA chr2:32678287,chr2:32678286 chr3:37566003,chr3:37565999 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Inhibitor_of_Apoptosis_domain(100%)|Integrin_alpha(100%) BIR(100%)|Integrin_alpha(100%),Integrin_alpha2(100%) 1 0 10 155 15 ENST00000700518.1 ENST00000264741.10 downstream upstream duplicates(1),mismatches(1) TCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAG___ATATGGATTATATAGCTCACCATTTGATCCAGTCCTCTTTGATTTGGAGATGAGTGGCTCTTCTTGTAAAAATGTTTATAACAGCAGCATTGGTGTCCAGTCAGATGAAATTGATTTATCAGATGTCCTTTCAG|AGCAAGGCCTGTCATTACGGTGGATGTCTCCATCTTCCTCCCGGGCTCCATCAACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTGAACTGCCTGAACGTCACCACCTGCTTCAGCTTCCATGGCAAACACGTTCCAGGAGAGATTG___GCCTGAATTATGTTCTG SRQLQDRLTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSIGVQSDEIDLSDVLS|eqglslrwmspsssrapstsqrlsvttdssl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 2607 BIRC6::ITGA9 ENSG00000115760.16::ENSG00000144668.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 437 TRUE 157 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32445668:+ chr2:32582091-32844638:+ chr2:32670736:+ ITGA9 ENSG00000144668.12 protein_coding + + chr3:37452115-37823507:+ chr3:37526026:+ chr3:37493606-37864998:+ chr3:37567517:+ chr2:32453219,chr2:32453218 chr3:37524512,chr3:37524508 NA NA chr2:32678287,chr2:32678286 chr3:37566003,chr3:37565999 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Inhibitor_of_Apoptosis_domain(100%)|Integrin_alpha(100%) BIR(100%)|Integrin_alpha(100%),Integrin_alpha2(100%) 1 0 7 210 13 ENST00000700518.1 ENST00000264741.10 downstream upstream duplicates(1) ATTAG___TAATGGCAAATGTGACCCATGTCAACCAGCATTTGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCATTTTTACCTGCAGCAACAACTGGTG___GTTCTGTCTATTGGTATTTTGTCTTACTGAATTATGTGAAAGATGAAGATCTGGCTGGATGCAGTACAGCTTGTGCATCTTTGCTTACTGCAGTGTCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAG|ATGTCACTGTTGGAGCCTTCATGTCCGACAGCGTGGTTCTTCTCAG___AGCAAGGCCTGTCATTACGGTGGATGTCTCCATCTTCCTCCCGGGCTCCATCAACATCACAGCGCCTCAGTGTCAC ISNGKCDPCQPAFGPVLLKALLDNMSFLPAATTGGSVYWYFVLLNYVKDEDLAGCSTACASLLTAVSRQLQDRLTPMEALLQTr|chcwslhvrqrgssqskachyggclhlppglhqhhsasvs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 2608 BIRC6::ITGA9 ENSG00000115760.16::ENSG00000144668.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 437 TRUE 157 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32445668:+ chr2:32582091-32844638:+ chr2:32670736:+ ITGA9 ENSG00000144668.12 protein_coding + + chr3:37452115-37823507:+ chr3:37533314:+ chr3:37493606-37864998:+ chr3:37574805:+ chr2:32453219,chr2:32453218 chr3:37524512,chr3:37524508 NA NA chr2:32678287,chr2:32678286 chr3:37566003,chr3:37565999 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Inhibitor_of_Apoptosis_domain(100%)|Integrin_alpha(100%) BIR(100%)|Integrin_alpha(100%),Integrin_alpha2(100%) 1 1 5 210 15 ENST00000700518.1 ENST00000264741.10 downstream upstream mismatches(1) ACGAAGTATAGCCCATAAGTGTGCCCGATTTCTAGCCTTGTGCATTAG___TAATGGCAAATGTGACCCATGTCAACCAGCATTTGGACCTGTTCTGTTGAAGGCTTTACTTGcTAATATGTCATTTTTACCTGCAGCAACAACTGGTG___GTTCTGTCTATTGGTATTTTGTCTTACTGAATTATGTGAAAGATGAAGATCTGGCTGGATGCAGTACAGCTTGTGCATCTTTGCTTACTGCAGTGTCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAG|AGCAAGGCCTGTCATTACGGTGGATGTCTCCA...GGCTCCATCAACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTGAACTGCCTGAACGTCACCACCTGCTTCAGCTTCCATGGCAAACACGTTCCAGGAGAGATTG___GCCTGAATTATGTTCTGATGG...TGGCCAAAAAGGAGAAGGGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGACCATGGGTCAGGTCACAGAGAAGCTGCAGCTGACTTACATGGAG RSIAHKCARFLALCISNGKCDPCQPAFGPVLLKALLaNMSFLPAATTGGSVYWYFVLLNYVKDEDLAGCSTACASLLTAVSRQLQDRLTPMEALLQTr|ARPVITVDVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 2612 PARD3::ENSG00000230534 ENSG00000148498.17::ENSG00000230534.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814876:- chr10:34398488-35104253:- chr10:35103804:- ENSG00000230534 ENSG00000230534.6 lncRNA - - chr10:35098006-35127020:- chr10:35101060:- chr10:35386934-35415948:- chr10:35389988:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none N-terminal_of_Par3_and_HAL_proteins(48%)| Par3_HAL_N_term(0%)| 5 12 2 147 45 ENST00000545260.5 ENST00000450742.5 upstream downstream duplicates(8),low_entropy(1),mismatches(1) GCGGGCCCGCCCGCGGCGGCGGCGGCATGAAAGTGACCGTGTGCTTCGGACGGACCCGGGTGGTCGTGCCGTGCGGGGACGGCCACATGAAAGTTTTCAGCCTCATCCAGCAGGCGGTGACCCGCTACCGGAAGGCCATCGCCAAG|GATAGAGGCACTCTCCATTCCTGATTGTTCCAAGGCTCAAGTGGTCAGAAATGACTGGGAAGAAGGGAGAAAAACTCAGGTGGCAAAGGACATGGACGAAAACCCATGGCGACATGGAAAGAAAACCCTGTGATATAGAGAGGAAgAGCACAGGACAGCTTATTGGGGAGAATGGAACTCTTCTGTATCCTGATTGCGGTGATGGCCACGCATGGCT___ATTTCAACACTACACTTGCACAATGTCTTTGAAACCAAGAGTAGTAGATTTTGATGAAACATGGA MKVTVCFGRTRVVVPCGDGHMKVFSLIQQAVTRYRKAIAK|drgtlhs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2613 NT5DC3::TFEC ENSG00000111696.12::ENSG00000105967.16 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NT5DC3 ENSG00000111696.12 protein_coding - - chr12:103770453-103841234:- chr12:103793164:- chr12:104164231-104235012:- chr12:104186942:- TFEC ENSG00000105967.16 protein_coding - + chr7:115935148-116159896:- chr7:115976728:+ chr7:115575202-115799950:- chr7:115616782:+ chr12:103789123,chr12:103789141 chr7:115968097,chr7:115968087 NA NA chr12:104182901,chr12:104182919 chr7:115608151,chr7:115608141 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none 5'_nucleotidase_family(57%)| 5_nucleotid(58%)| 2 3 12 212 21 ENST00000392876.8 unknown upstream upstream duplicates(1),mismatches(3) AGCAGACATTG___AAAAGTACATCTGCTATGCTGAGCAGACCCGCGCAGTGTTGGCCAAACTGGCTGATCATGGCAAGAAGATGTTTCTCATCACCAATAGCCCCAGTAGCTTTGT___GGACAAAGGGATGAGTTATATCGTTGGGAAAGACTGGAGGGACCTGTTCGATGTGGTCATTGTTCAGGCTGAGAAGCCAAACTTCTTTAATGATAAGCGGAG|ATGTGAAGAAGATTTGAGGAAAGAAGATTGCTAAACATAATTTATGAGGAGTGCTTTTCATTTGGATACTTGGAGTGGATTCAGTAAAAGTTACACATAAGTCATTCATCTATTTTCTCTCTGGAAGCTTACGTCATAAATGACACGGTCTGTTTAATTTTTCATGTTGACTATAAAGCATGCTTAGGTTTCCCTTATTCCAGAAAGAAACTTTT ADIEKYICYAEQTRAVLAKLADHGKKMFLITNSPSSFVDKGMSYIVGKDWRDLFDVVIVQAEKPNFFNDKRr|ceedlrkedc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2614 ERCC6L2::PPP1R9A-AS1 ENSG00000182150.19::ENSG00000236197.5 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERCC6L2 ENSG00000182150.19 protein_coding + + chr9:95871264-96121154:+ chr9:95966714:+ chr9:98633546-98883436:+ chr9:98728996:+ PPP1R9A-AS1 ENSG00000236197.5 lncRNA - - chr7:95035731-95214338:- chr7:95136106:- chr7:94665043-94843650:- chr7:94765418:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)| DEAD(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%)| 3 2 9 309 33 ENST00000670016.1 unknown downstream downstream duplicates(4) CTTCAAGCCATTGACAG___...ACAATGTAGAGATGTCAA?GTGCTTAGGCTGATATCCTTGGGAACTGTGGAGGAAATCATGTATTTACGACAGATATACAAGCAG___CAACTTCACTGTGTGGTGGTTGGAAGTGAAAATGCCAAACGATATTTTGAAGCAGTTCAAGGATCTAAAGAGCATCAAGGAGAGCTTTTTGGGATCCATAACCTCTTCAAATTTAGGTCCCAAGGGTCTTGTCTTACGAAGGACATCCTGGAG|CAATAATCATCAATGTTTCTGAGTGACAAATGACTACAAATGGCAATCCTGCCAAGCAACTTTCATGGCACTACAAGTTGGTGGACTTAGGGACGTATACGGAAGATAAAG QCRDV?VLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILE|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2615 ERCC6L2::PPP1R9A ENSG00000182150.19::ENSG00000158528.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERCC6L2 ENSG00000182150.19 protein_coding + + chr9:95871264-96121154:+ chr9:95966714:+ chr9:98633546-98883436:+ chr9:98728996:+ PPP1R9A ENSG00000158528.12 protein_coding + - chr7:94907202-95296415:+ chr7:95136106:- chr7:94536514-94925727:+ chr7:94765418:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)| DEAD(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%)| 3 1 9 309 33 ENST00000670016.1 unknown downstream downstream duplicates(3) CTTCAAGCCATTGACAG___...ACAATGTAGAGATGTCAA?GTGCTTAGGCTGATATCCTTGGGAACTGTGGAGGAAATCATGTATTTACGACAGATATACAAGCAG___CAACTTCACTGTGTGGTGGTTGGAAGTGAAAATGCCAAACGATATTTTGAAGCAGTTCAAGGATCTAAAGAGCATCAAGGAGAGCTTTTTGGGATCCATAACCTCTTCAAATTTAGGTCCCAAGGGTCTTGTCTTACGAAGGACATCCTGGAG|CAATAATCATCAATGTTTCTGAGTGACAAATGACTACAAATGGCAATCCTGCCAAGCAACTTTCATGGCACTACAAGTTGGTGGACTTAGGGACGTATACGGAAGATAAAGGCAAGA QCRDV?VLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRSQGSCLTKDILE|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2619 ST7-OT4::ST7-AS2 ENSG00000214188.9::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 440 TRUE 158 ST7-OT4 ENSG00000214188.9 lncRNA + + chr7:116953899-117098806:+ chr7:116955153:+ chr7:116593953-116738860:+ chr7:116595207:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117117983:- chr7:116712126-116786534:- chr7:116758037:- chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381 chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069 NA NA chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435 chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 3 2 5 318 15 ENST00000471110.5 ENST00000432541.5 downstream downstream duplicates(5) GCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTG...TCTTCACAAACTTGGAGCCAGCCCACTGAGTCGTTAAAAAAACACCCGCAAAGAAAACACACGAGCCTTAACACTCCAGAGAGTTCCGAAACACAAAGTAAATTTCGAGCTAAGGGTTACAGTCCTTTAAATCTGGAAATTTCAAG...ATCGTGTCCCTGGGAGGCGGATAGGATTCAGCACTCTAGAATTGTCTCACCATTTGAATAGGTGCTGCTCAGCCCTTTTGAGTCTGTCATCGGAAAGACCATGGCTTTCTCGCTTTTCATCTTTTTGGATGGCTGCTTGTCGCAATATTGTCTTCTTCGCTTTAGACAA|GAATGGGATTTTGCATAAAAGAAGAAAGCTCAGGAATGATAAATTTACACACCATGGATCTAGAAGGGAGTCTATAACCCCAG___AGTGAGGTCAGCTAAAAACAAGAAAGAAA...___TGCTTAAAACAATACTTCAAGAAATGTTCAACATTCCACGAGAACAATATCCACGTGAGATGAAAAGAAAAGTCTAAGTTAGTTCCTGATTCCTGGAAGCgGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2620 ST7-OT4::ST7-AS2 ENSG00000214188.9::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 440 TRUE 158 ST7-OT4 ENSG00000214188.9 lncRNA + + chr7:116953899-117098806:+ chr7:116955153:+ chr7:116593953-116738860:+ chr7:116595207:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117081072:- chr7:116712126-116786534:- chr7:116721126:- chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381 chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069 NA NA chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435 chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 2 1 318 146 ENST00000471110.5 ENST00000432541.5 downstream downstream duplicates(2) CTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG___TATCCCTCGGGATCGTGTCCCTGGGAGGCGGATAGGATTCAGCACTCTAGAATTGTCTCACCATTTGAATAGGTGCTGCTCAGCCCTTTTGAGTCTGTCATCGGAAAGACCATGGCTTTCTCGCTTTTCATCTTTTTGGATGGCTGCTTGTCGCAATATTGTCTTCTTCGCTTTAGACAA|AGTGAGGTCAGCTAAAAACAAGAAAGAAATTTAAAGCATCCTGGGAAGTCATCATACCCTTTTTCTCCAAG...ACTATCTTTTTCACTTTGGATTTGGATTTTGGTGTGATATACACAGTTCCAAAAAATCAATGGATAGAAAACTCAATGGCATAAATAAG___TGCTTAAAACAATACTTCAAGAAATGTTCAACATTCCACGAGAACAATATCCACGTGAGATGAAAAGAAAAGTCTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2621 ST7-OT4::ST7-AS2 ENSG00000214188.9::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 440 TRUE 158 ST7-OT4 ENSG00000214188.9 lncRNA + + chr7:116953899-117098806:+ chr7:116955153:+ chr7:116593953-116738860:+ chr7:116595207:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117073926:- chr7:116712126-116786534:- chr7:116713980:- chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381 chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069 NA NA chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435 chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 2 318 148 ENST00000471110.5 ENST00000432541.5 downstream downstream duplicates(2) GTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG___TATCCCTCGGGATCGTGTCCCTGGGAGGCGGATAGGATTCAGCACTCTAGAATTGTCTCACCATTTGAATAGGTGCTGCTCAGCCCTTTTGAGTCTGTCATCGGAAAGACCATGGCTTTCTCGCTTTTCATCTTTTTGGATGGCTGCTTGTCGCAATATTGTCTTCTTCGCTTTAGACAA|TGCTTAAAACAATACTTCAAGAAATGgTCAACATTCCACGAGAACAATATCCACGTGAGATGAAAAGAAAAGTCTAAGTTAGTTCCTGATTCCTGGAAGCTGGGAAA___GTCTCATTCCAGTAACTACTTAATACCCCCTGTCAGTCTCCTTCAAAGGCTGAAGCCAGCCTCTGACTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2622 MIR4280HG::TMEM161B ENSG00000233828.5::ENSG00000164180.14 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR4280HG ENSG00000233828.5 lncRNA - - chr5:87048858-87138397:- chr5:87121821:- chr5:86344675-86434214:- chr5:86417638:- TMEM161B ENSG00000164180.14 protein_coding - - chr5:88189633-88269476:- chr5:88240916:- chr5:87485450-87565293:- chr5:87536733:- chr5:87115342,chr5:87115345 chr5:88242032,chr5:88242032 NA NA chr5:86411159,chr5:86411162 chr5:87537849,chr5:87537849 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Predicted_transmembrane_protein_161AB(100%) |Tmemb_161AB(100%) 1 2 6 20 165 ENST00000666497.1 ENST00000514135.5 upstream downstream mismatches(1) AGAGGAGAGACAAGTTAGAGGTTTTTGTGGTAGTGCAGGTGTTTGACAATaGTGGTGAGATTAGCATGGTAGTACTGGAAATAGTAATTAGATTCTGGATA...CAAGCATCTCCCCTAGGATTTTGCCTTGAGCTGtTCGTGAAGTGGAAATGCATTTACTGAGAGAAGACTGGGGGAGAACAATTTATAAGGGAGGAAATTAGAAGTTCTACTCCAG|GGTGTGATAGGTATACAGCTGGTTGTTACCATGGTGATGGCCAGTGTCATGCAGAAGATTATACCTCACTATTCTCTTGCTCGATGGCTACTCTGTAATGGCAG___TTTGAGGTGGTATCAACATCCTACAGAAGAAGAATTAAGAATTCTTGCAGGGAAACAACAAAAAGGGAAAACCAAAAAAGATAG___CATTGCATTACTTTCCAGAATACCAGTGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2626 ENSG00000243797::SLC26A3 ENSG00000243797.6::ENSG00000091138.13 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 442 FALSE NA ENSG00000243797 ENSG00000243797.6 lncRNA - - chr7:106372251-106770207:- chr7:106610397:- chr7:106012697-106410653:- chr7:106250843:- SLC26A3 ENSG00000091138.13 protein_coding - - chr7:107765467-107803225:- chr7:107779763:- chr7:107405912-107443670:- chr7:107420208:- chr7:106583354,chr7:106583356 chr7:107780153,chr7:107780152 NA NA chr7:106223800,chr7:106223802 chr7:107420598,chr7:107420597 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |STAS_domain(100%),Sulfate_permease_family(9%) |STAS(100%),Sulfate_transp(9%) 4 0 4 22 49 ENST00000592441.1 ENST00000340010.10 upstream downstream none ATTCAGTACTGTCTTTATGTTTTGATGCTATCCAAGTTCAAGCTTTGAGGTGTTTTGGCATCATAAAGCAGCATCAAG___...CTCATCTGCAAACTCTTTTGATACTTTGGGATAGAATTTGTATTAACAGAAGTTTTGAAGTCATTCAGA___ATGCCACATGACCAACGTGGGGTCACCAATTGGAACAGGGAAGAGATGTGCACAATGGCCCTCTCTCCAGCTTGTGTGAGCCGGCTCCAACACACATCCTGTGGAGCGAGAGTTTG___GTTGAAATTTTTAAAAAATGAAATAGAACCACAAAGAAAATATCAGAACACATTGCACTTAGTAAAG|TCCGTCCTGGCAGCTTTAGCATTGGGAAACTTAAAGGGAATGCTGATGCAGTTTGCTGAAATAGGCAGATTGTGGCGAAAGGACAAATATGATTGT___TTAATTTGGATCATGACCTTCATCTTCACCATTGTCCTGGGACTCGGGTTAGGCCTGGCAGCTAGTGTGGCATTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2633 LPAR1::SUSD1 ENSG00000198121.15::ENSG00000106868.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 444 TRUE 159 LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111037841:- chr9:113635543-113800750:- chr9:113800121:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112052438:- chr9:114803063-114937577:- chr9:114814718:- chr9:111037324,chr9:111037326 chr9:112056426,chr9:112056425 NA NA chr9:113799604,chr9:113799606 chr9:114818706,chr9:114818705 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(27%) none 0 3 1 2 113 ENST00000374431.7 ENST00000374270.8 upstream downstream duplicates(1),mismatches(1) TGGGCCGCGGCGCGGGTGGGTGGCCGTGCGTTCTTGCGAGCCGGCCTGCAGGAGGCGAGGCTCCCCTGGCCTCCCGCACCCAGCGGCGGACCGAGCCCCTGGAGGGAAGTTGCCGCAGCCGCCCGGGCCGCCGGCCCTCCTGTCCCGCGCCAG|GTGAGAAGACACTCCTGTGCAGTTTGGGCTCAGGTGAAAG___ATTCGTCACTCATGCTGCTGCAGATGGCGGGTGTTGGACTGGGTTCCCTGGCTGTTGTGATCATTCTCACATTCCTCTCCTTCTCAGCGGTGTG___ATGGCAGATGGACACTGAGTaGGGAGGATGCACTGCTGCTGGGCAGGTGTTCTGGCAGCTTCTCAGGTGCCCGCACAGAGGCTCCGTGTGACTTCCGTCCAGGGAGCATGTGGGCCTGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2634 LPAR1::SUSD1 ENSG00000198121.15::ENSG00000106868.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 226 TRUE 444 TRUE 159 LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111038167:- chr9:113635543-113800750:- chr9:113800447:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112052438:- chr9:114803063-114937577:- chr9:114814718:- chr9:111037324,chr9:111037326 chr9:112056426,chr9:112056425 NA NA chr9:113799604,chr9:113799606 chr9:114818706,chr9:114818705 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(27%) none 0 12 0 1 113 ENST00000683809.1 ENST00000374270.8 upstream downstream duplicates(1) CCGGGACTGGGCGCGCGGCCTGAAGCCAGCCCGGGGGCGGCAGGAGAGGGACGCGCGGCGGCAGCGAGCGCAG|GTGAGAAGACACTCCTGTGCAGTTTGGGCTCAGGTGAAAG___ATTCGTCACTCATGCTGCTGCAGATGGCGGGTGTTGGACTGGGTTCCCTGGCTGTTGTGATCATTCTCACATTCCTCTCCTTCTCAGCGGTGTG___ATGGCAGATGGACACTGAGTGGGGAGGATGCACTGCTGCTGGGCAGGTGTTCTGGCAGCTTCTCAGGTGCCCGCACAGAGGCTCCGTGTGACTTCCGTCCAGGGAGCATGTGGGCCTGCAACTTTCTCCATTCCCAGCTGGGCCCCATTCCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2635 LPAR1::SUSD1 ENSG00000198121.15::ENSG00000106868.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 444 TRUE 159 LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111038167:- chr9:113635543-113800750:- chr9:113800447:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112041960:- chr9:114803063-114937577:- chr9:114804240:- chr9:111037324,chr9:111037326 chr9:112056426,chr9:112056425 NA NA chr9:113799604,chr9:113799606 chr9:114818706,chr9:114818705 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(17%) none 0 1 0 1 171 ENST00000683809.1 ENST00000374270.8 upstream downstream duplicates(1) CGCGGCCTGAAGCCAGCCCGGGGGCGGCAGGAGAGGGACGCGCGGCGGCAGCGAGCGCAG|ATTCGTCACTCATGCTGCTGCAGATGGCGGGgGTTGGACTG...GGGAGGATGCACTGCTGCTGGGCAGGTGTTCTGGCAGCTTCTCAGGTGCCCGCACAGAGGCTCCGTGTGACTTCCGTCCAGGGAGCATGTGGGCCTGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2639 DST::ENSG00000225096 ENSG00000151914.22::ENSG00000225096.3 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DST ENSG00000151914.22 protein_coding - - chr6:56457987-56954830:- chr6:56843055:- chr6:56322785-56819628:- chr6:56707853:- ENSG00000225096 ENSG00000225096.3 lncRNA + - chr6:57961438-58438364:+ chr6:57975320:- chr6:58287716-58764642:+ chr6:58301598:- chr6:56824113 chr6:58008608 NA NA chr6:56688911 chr6:58334886 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 1 3 150 6 ENST00000370788.6 unknown upstream downstream mismatches(1) CCCAAGGCTGTGTCTTGCTGACTGCGATACTGTCCGGGGGTTACGAGGGGGAGAGGGGAATTTGTCAGTCATCGCTTAGATAAACTTCGGCATGGCGGGTTACCTCTCCCCTGCTGCTTACCTGTACGTGGAGGAGCAGGAGTATCTCCAGGCCTACGAGGATGTCCTGGAGAGGTACAAAG|CTCGCAAGATGGTG...CTGGACCAGCAGCAGCAGAATCACCTGAGAATATGTTAGAAATGCAAATTCCCTGGCCCACCTGGACCTAACAATTAATAAACTCTGGGAATGAGATCCAG MAGYLSPAAYLYVEEQEYLQAYEDVLERYK|arkm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2642 PLXDC2::MIR3681HG ENSG00000120594.17::ENSG00000224184.7 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PLXDC2 ENSG00000120594.17 protein_coding + + chr10:19816239-20289856:+ chr10:19817191:+ chr10:20105168-20578785:+ chr10:20106120:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12558206:+ chr2:11974052-12843039:+ chr2:12698332:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 1 2 98 3 ENST00000377252.5 ENST00000412294.5 downstream upstream duplicates(1) GCGGCGGCATGGCGAGGTTCCCGAAGGCCGACCTGGCCGCTGCAGGAGTTATGTTACTTTGCCACTTCTTCACGGACCAGTTTCAGTTCGCCGATGGGAAACCCGGAGACCAAATCCTTG|GAGCCTTCATCTACCACATAAGAATTGCAGCAAACCCTGCAGCTATCCTGAAGCTGCCATGCTGAAAAGGCCAATTGGGAGACCACATAGAGACCGAGAGAGACTTCCAAGGACTCCAGCCAATCCTGGGCCCCAGCAGTTTGAATCTCCCAGCAATGCCACCATACAGGAGAGGGAGCAAATACTCAGAAGATTCAAGTGCCAGCTGCATGGGTTGATACCTACATAAAAG MARFPKADLAAAGVMLLCHFFTDQFQFADGKPGDQIL|gafiyhiriaanpaailklpc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2645 ST7::ST7-AS2 ENSG00000004866.22::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 445 TRUE 160 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117081072:- chr7:116712126-116786534:- chr7:116721126:- chr7:117135662,chr7:117116754,chr7:117120244,chr7:117135649,chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381,chr7:117116741 chr7:117135649,chr7:117116741,chr7:117120244,chr7:117135662,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117116754 NA NA chr7:116775716,chr7:116756808,chr7:116760298,chr7:116775703,chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435,chr7:116756795 chr7:116775703,chr7:116756795,chr7:116760298,chr7:116775716,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116756808 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none ST7_protein(5%)| ST7(0%)| 13 9 24 2938 146 ENST00000393446.6 ENST00000432541.5 downstream downstream duplicates(11),mismatches(2) GCGGCAGCAGAGAGGAGCGCTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|AGTGAGGTCAGCTAAAAACAAGAAAGAAATTTAAAGCATCCTGGGAAGTCATCATACCCTTTTTCTCCAAGAAAATCTAGTTTTGCTTGTTTTTGTGTATCCCACAACACCTGTGTTTGACTATCTTTTTCACTTTGGATTTGGATTTTGGTGTGATATACACAGTTCCAAAAAATCAATGGATAGAAAACTCAATGGCATAAATAAG___TGCTTAAAACAATACTTCAAGAAATGTTCAACATTCCACGAGAACAATATCCACGTGAGATGAAAAGAAAAGTCTAAGTTAGTTCCTGATTCCTGG MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2646 ST7::ST7-AS2 ENSG00000004866.22::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 445 TRUE 160 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117112667:- chr7:116712126-116786534:- chr7:116752721:- chr7:117116754,chr7:117120244,chr7:117135649,chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381,chr7:117116741,chr7:117135662 chr7:117116741,chr7:117120244,chr7:117135662,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117116754,chr7:117135649 NA NA chr7:116756808,chr7:116760298,chr7:116775703,chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435,chr7:116756795,chr7:116775716 chr7:116756795,chr7:116760298,chr7:116775716,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116756808,chr7:116775703 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none ST7_protein(5%)| ST7(0%)| 3 4 8 2938 14 ENST00000393446.6 ENST00000442719.1 downstream downstream duplicates(3) CGGCAGCAGAGAGGAGCGCTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|AATCACCATTATTTTGGGTGATCCATATGGCTATCAATTAAAGTGCTACCTGAGTGCTGTTCAACTTCTTGAGATGGATGAAAAAGGAATGAAAGGAGACATAGCAATCTTCAACTCCGCTCCTTTACTTTTGAATAAGAGGTGATGGAAGGCAAG___AGTGAGGTCAGCTAAAAACAAGAAAGAAATTTAAAGCATCCTGGGAAGTCATCATACCCTTTTTCTCCAAGAAAATCTAGTTTTGCTTGTTTTTG MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|esplfwvihmain* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2647 ST7::ST7-AS2 ENSG00000004866.22::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 445 TRUE 160 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117073926:- chr7:116712126-116786534:- chr7:116713980:- chr7:117135662,chr7:117116754,chr7:117120244,chr7:117135649,chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381,chr7:117116741 chr7:117135649,chr7:117116741,chr7:117120244,chr7:117135662,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117116754 NA NA chr7:116775716,chr7:116756808,chr7:116760298,chr7:116775703,chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435,chr7:116756795 chr7:116775703,chr7:116756795,chr7:116760298,chr7:116775716,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116756808 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none ST7_protein(5%)| ST7(0%)| 3 2 10 2938 148 ENST00000393446.6 ENST00000432541.5 downstream downstream duplicates(2),mismatches(2) GCGGCAGCAGAGAGGAGCGCTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|TGCTTAAAACAATACTTCAAGAAATGTTCAACATTCCACGAGAACAATATCCACGTGAGATGAAAAGAAAAGTCTAAGTTAGTTCCTGATTCCTGGAAGCTGGGAAA___GTCTCATTCCAGTAACTACTTAATACCCCCTGTCAGTCTCCTTCAAAGGCTGAAGCCAGCCTCTGACTGAAGCGCAGCCGCA MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|vlktilqemfnipreqypremkrkv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2648 ST7::ST7-AS2 ENSG00000004866.22::ENSG00000226367.6 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 445 TRUE 160 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ ST7-AS2 ENSG00000226367.6 lncRNA - - chr7:117072072-117146480:- chr7:117117983:- chr7:116712126-116786534:- chr7:116758037:- chr7:117135649,chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381,chr7:117120244,chr7:117135662 chr7:117135662,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069,chr7:117120244,chr7:117135649 NA NA chr7:116775703,chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435,chr7:116760298,chr7:116775716 chr7:116775716,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123,chr7:116760298,chr7:116775703 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none ST7_protein(5%)| ST7(0%)| 0 3 0 2938 15 ENST00000393446.6 ENST00000432541.5 downstream downstream duplicates(1) TCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|GAATGGGATTTTGCATAAAAGAAGAAAGCTCAGGAATGATAAATTTACACACCATGGATCTAGAAGG...GCCTCCCAGATAGCTGGGACTACAG___ATGCCATCTCTCAGCACCCAATCTAACCCAAACTCTACACTGCCACCTGAGTCATCTTTCTAACACATGGGAATTGATCTGCTCCAGCTTAAAGATCACTAACACAAGGCATGACTAAAACAG...CTATCTTTTTCACTTTGGATTTGGATTTTGGTGTGATATACACAGTTCCAAAAAATCAATGGATAGAAAACTCAATGGCATAAATAAG___TGCTTAAAACAAT YILRVPLKINDNLST|gmgfcikeessgminlhtmdle NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2651 AGO3::PPP6R3 ENSG00000126070.20::ENSG00000110075.15 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 446 TRUE 161 AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:36043548:+ chr1:36396319-36538101:+ chr1:36509149:+ PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68505145:+ chr11:68228199-68382802:+ chr11:68272613:+ chr1:36059698,chr1:36059696 chr11:68493488,chr11:68493483 NA NA chr1:36525299,chr1:36525297 chr11:68260956,chr11:68260951 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(80%)|SIT4_phosphatase-associated_protein(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(58%)|SAPS(100%) 1 0 1 208 127 ENST00000373191.9 ENST00000265636.9 downstream upstream duplicates(2) AAAG___ACCTTCTGTGTTCCAGCAACCAGTGATCTTTTTGGGAGCCGATGTCACTCATCCACCTGCTGGTGATGGAAAGAAGCCTTCTATTGCTGCTGT...ACAACAGTTGATACAGACATTACACACCCATATGAGTTCGATTTTTACCTCTGTAGCCATGCTGGAATACAG|ATAAGAAAACAAGCTCAGAGAGATGTGG TTVDTDITHPYEFDFYLCSHAGIQ|irkqaqrdv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2652 AGO3::PPP6R3 ENSG00000126070.20::ENSG00000110075.15 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 446 TRUE 161 AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:36055145:+ chr1:36396319-36538101:+ chr1:36520746:+ PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68505145:+ chr11:68228199-68382802:+ chr11:68272613:+ chr1:36059698,chr1:36059696 chr11:68493488,chr11:68493483 NA NA chr1:36525299,chr1:36525297 chr11:68260956,chr11:68260951 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%)|SIT4_phosphatase-associated_protein(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%)|SAPS(100%) 0 1 1 187 127 ENST00000373191.9 ENST00000529907.5 downstream upstream duplicates(2) TCTATACCTGCACCAGCGTATTATGCTCACCTGGTAGCATTTAGAGCCAGATATCATCTTGTGGACAAAGAACATGACAG|ATAAGAAAACAAGCTCAGAGA...AAATAGTGACAGAACTTCCTCGGCCATATGGAGGGGTCATATAATACCCTTGTGTCTTCAGTTTGAGGTACCTCCCATAATTTTAAGGG___GAGAGCTTGgTT SIPAPAYYAHLVAFRARYHLVDKEHDr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2654 CENPP::ASZ1 ENSG00000188312.15::ENSG00000154438.8 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 447 TRUE 162 CENPP ENSG00000188312.15 protein_coding + + chr9:92325953-92620529:+ chr9:92379859:+ chr9:95088235-95382811:+ chr9:95142141:+ ASZ1 ENSG00000154438.8 protein_coding - - chr7:117363222-117428123:- chr7:117385809:- chr7:117003276-117068177:- chr7:117025863:- chr9:92616336,chr9:92616332 chr7:117407916,chr7:117407920 NA NA chr9:95378618,chr9:95378614 chr7:117047970,chr7:117047974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none CENP-A-nucleosome_distal_(CAD)_centromere_subunit__CENP-P(48%)|Ankyrin_repeats_(3_copies)(78%),SAM_domain_(Sterile_alpha_motif)(100%) CENP-P(15%)|Ank(96%),Ank_2(2%),Ank_3(28%),Ank_4(100%),Ank_5(2%),SAM_1(100%),SAM_2(100%) 2 0 5 705 8 ENST00000375587.8 ENST00000284629.7 downstream downstream none CAAGCACTGAGATGACAGAAAAGA___GTATTAGAAAAGTTCTACAGAGACACAGATTATCAGGAAATTGCCACATGGTTACATTTCAACTTGAATTTCAGATTCTGGAAATTCAG___...AGAATTAAGTGAATTTGTGTCTAG___AGCAGAAGAGAGAAAAGATCTGTTCATGTTTTTCCGAAGCCTGCATTTTTTTGTGGAGTGGTTTGAATATCGTAAGCGCACGTTTAAACATCTCAAG|GAGACTTATGACCCCAATCATGTATGCTGCTCGAGATGGTCACACCCAGGTTGTT ELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLK|etydpnhvccsrwshpgc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2655 CENPP::ASZ1 ENSG00000188312.15::ENSG00000154438.8 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 447 TRUE 162 CENPP ENSG00000188312.15 protein_coding + + chr9:92325953-92620529:+ chr9:92379859:+ chr9:95088235-95382811:+ chr9:95142141:+ ASZ1 ENSG00000154438.8 protein_coding - - chr7:117363222-117428123:- chr7:117384860:- chr7:117003276-117068177:- chr7:117024914:- chr9:92616336,chr9:92616332 chr7:117407916,chr7:117407920 NA NA chr9:95378618,chr9:95378614 chr7:117047970,chr7:117047974 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none CENP-A-nucleosome_distal_(CAD)_centromere_subunit__CENP-P(48%)|Ankyrin_repeats_(3_copies)(32%),SAM_domain_(Sterile_alpha_motif)(100%) CENP-P(15%)|Ank(7%),Ank_2(0%),Ank_4(5%),Ank_5(0%),SAM_1(100%),SAM_2(100%) 1 0 5 705 23 ENST00000375587.8 ENST00000284629.7 downstream downstream none ATCTTCTGCTGTTACTGACCTCAACATAATAATGGAGCCCACAGAATGCTCAGAATTAAGTGAATTTGTGTCTAG___AGCAGAAGAGAGAAAAGATCTGTTCATGTTTTTCCGAAGCCTGCATTTTTTTGTGGAGTGGTTTGAATATCGTAAGCGCACGTTTAAACATCTCAAG|GCTTTAACGTGGGCAGCACGTCAGGGTCATAAAAATATAGTTTTGAAGTTGCTTGAACTTGGAGCTAATAAAATGCTACAAACCAAAGATGGAAAGATGCCAAGTGAGATTGCAAAAAGAAACAAACATCATGAG___ATCTTCAACTTACTTTCTTTTACTTTAAATCCATTGGAAGGAAAACTTCAACAGCTAACTAAAGAAGACACTATTTGTAAA SSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLK|ALTWAARQGHKNIVLKLLELGANKMLQTKDGKMPSEIAKRNKHHEIFNLLSFTLNPLEGKLQQLTKEDTIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2659 PSMB2::CELF4 ENSG00000126067.12::ENSG00000101489.20 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSMB2 ENSG00000126067.12 protein_coding - - chr1:35599541-35641526:- chr1:35641342:- chr1:36065142-36107127:- chr1:36106943:- CELF4 ENSG00000101489.20 protein_coding - - chr18:37243040-37565827:- chr18:37529188:- chr18:34823003-35145790:- chr18:35109151:- chr1:35638701,chr1:35638703 chr18:37536478,chr18:37536477 NA NA chr1:36104302,chr1:36104304 chr18:35116441,chr18:35116440 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Proteasome_subunit(14%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(80%) Proteasome(0%)|RRM_1(61%),RRM_5(100%) 2 4 5 5767 11 ENST00000373237.4 ENST00000587449.1 upstream downstream duplicates(1),mismatches(1) GGAAGTCGTGCTGCAGGCGTCGCGCCAATCTTCGCTCTGAGGTGCTGTCTCACCGGTGAGACCTGGAAGCGGGCGAGTCTCGTGCTGTGTCGGACCTGCAGCCCCTGGCCTTCCGCCACCATGGAGTACCTCATCGGTATCCAAGGCCCCGACTATGTTCTTGTCGCCTCCGACCGGGTGGCCGCCAGCAATATTGTCCAGATGAAGGACG|ATGCAAGGAGGCTGGTACTATCATCATCCTCATTTTACAGATGAGGACACCGAGGCACAGAGCACCTGAGCGACTTGCCCAGTAAATCCCCAATTTGAGACCCTGGTTCTTAATCCTTTAGTACCCACCTCCACCTGGGTCgTCCTACCCTAGAGCCTCCATCCTCTGGGAAAGTAGCAATTTGGGGTAAAAAAATAATAATAAAGGAATGAGCTAAGA MEYLIGIQGPDYVLVASDRVAASNIVQMKD|darrlvlssssfyr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2662 ADK::PCDH15 ENSG00000156110.15::ENSG00000150275.20 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74398579:+ chr10:75910960-76469721:+ chr10:76158337:+ PCDH15 ENSG00000150275.20 protein_coding - + chr10:53802771-55627942:- chr10:54892751:+ chr10:55562531-57387702:- chr10:56652511:+ chr10:74507521 chr10:54830570 NA NA chr10:76267279 chr10:56590330 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none pfkB_family_carbohydrate_kinase(46%)| PfkB(38%)| 2 2 6 2635 14 ENST00000673352.1 unknown downstream upstream duplicates(1),mismappers(1) CACAAAGCAGCAACATTTTTTGGATGCATTGGGATAGATAAATTTGGGGAGATCCTGAAGAGAAAAGCTGCTGAAGCCCATGTGGATGCTCATTACTACGAGCAGAATGAGCAGCCAACAGGAACTTGTGCTGCATGCATCACTGGTGACAACAG___GTCCCTCATAGCTAATCTTGCTGCTGCCAATTGTTATAAAAAGGAAAAACATCTTGATCTGGAGAAAAACTGGATGTTGGTAGAAAAAGCAAGAGTTTGTTATATAGCA|ATGGAGTTTCACTCTTGTCACCCAAGCTGGAGTGCAATGGATCTTGGCTCACTGCAGCCTCTGCCCCCCAGGTTCAAGCAATTCTCTTGCCTCAGCTTTCTGAGTAGCTGAGTTTACAAGTACCTGCCACCACACCTATTTCTAAAAGATATTTTTCCTCAATTTAAAGGAAATCACATATTAAAAATTTCATTTCCAGGCAAACTTAATGAGAAATGTAATATAATACATCTCCTCCTGGACTTTTCAAACATTCATGACAAGGAAATATAGAAGATTGAGAAGGAAAATCATCCAAAGATATTGGAATTAGATTGACACTTAAACTATCTACAtTATTAGACACTGGGGTATATTAGGTGGCCCTCAG HKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIA|mefhschpswsamdlgslqplpprfkqfsclsflss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2664 ST7::ENSG00000288635 ENSG00000004866.22::ENSG00000288635.1 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ ENSG00000288635 ENSG00000288635.1 protein_coding + - chr7:116954391-117119719:+ chr7:117084303:- chr7:116594445-116759773:+ chr7:116724357:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none ST7_protein(5%)| ST7(0%)| 5 0 4 2938 31 ENST00000393446.6 unknown downstream downstream duplicates(2) CAGACACCAAGAGCCGCGGCAGCAGAGAGGAGCGCTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|ATGCCATCTCTCAGCACCCAATCTAACCCAAACTCTACACTGCCACCTGAGTCATCTTTCTAACACATGGGAATTGATCTGCTCCAGCTTAAAGATCACTAACACAAGGCATGACTAAAACAGATGAAGAAACTAATACCTAAAGATG MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|daisqhpi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2665 UBE2L3::ATRNL1 ENSG00000185651.16::ENSG00000107518.18 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21567771:+ chr22:21903736-21978323:+ chr22:21922060:+ ATRNL1 ENSG00000107518.18 protein_coding + - chr10:115093365-115948999:+ chr10:115563175:- chr10:116853124-117708510:+ chr10:117322685:- chr22:21585706,chr22:21585707 chr10:115681189,chr10:115681188 NA NA chr22:21939995,chr22:21939996 chr10:117440699,chr10:117440698 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Ubiquitin-conjugating_enzyme(3%)| UQ_con(25%)| 0 7 1 3241 81 ENST00000545681.2 unknown downstream downstream duplicates(4),mismatches(2) GGGCTCCAGCCGCCCGGgCGGCCGgGgTGCATTCTGGGGAAGGAGCAGCACCAAATCCAAGATGGCGGCCAGCAGGAGGCTGATGAAG|GCGCTCACCAGAAGCAGATACTGGTCCCATGCTTCTTGTACAGCCTGTGGAACCATGAGGCAAATAAACCTTCTTCCTTTATAAAT...AAATTGATACACCTTTGTTGAACTGAGCAAAATGAAAGCACTATATTTACCATGAAGTCTTTGGAAACAGGTTTACAAG___ATTATGCTATGAGAAGACCCAGAAGTGAACAGACCTGGGACACTACAAATTCGCTGGTCACTGGACATTACAAGAAAAACCTGGTTCTCATCCTTAATCATTGTGTTCATCACTTAAGTCACTCATAAGCAGTGGCAATTTTTGACACTTTCCACTCTTGTCAAGTCTTCAATATATTTTTTCTCCTTGCCTATGCCTCATTTGAAGCAGAAGACCTTAGAATATCCTTCAATGACAACGATAACAACAATGTCAATTTTAAC MAASRRLMK|altrsrywshasctacgtmrqinllpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2668 NEK10::CCBE1 ENSG00000163491.18::ENSG00000183287.15 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27301696:- chr3:27147975-27410951:- chr3:27343187:- CCBE1 ENSG00000183287.15 protein_coding - - chr18:59430939-59697662:- chr18:59466891:- chr18:57098171-57364894:- chr18:57134123:- chr3:27301198,chr3:27301201 chr18:59468819,chr18:59468819 NA NA chr3:27342689,chr3:27342692 chr18:57136051,chr18:57136051 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Calcium-binding_EGF_domain(99%),Collagen_triple_helix_repeat_(20_copies)(100%) |Collagen(100%),EGF(100%),EGF_CA(4%),hEGF(100%) 1 3 0 17 994 ENST00000691995.1 ENST00000649564.1 upstream downstream duplicates(2),mismatches(1) TTCTGGCTCTGGCTAGTTTAGCAGAAAG___TCAAGAATGTAGGGAGAAGATAAGTGAACTCAACATTGTAGAAAATCTGTTGATGATTTTACATGAATATGAC...CAGGCCGAATCCAGCAGCTTCATTTATCAGAAGACTTGAGCCCTAGGGAAATACAAGAAAATACTTTCTCACTTCAAGCAG|ATATTGATGAGTGTGCCAGCAGCAATGGGACGCTGTGTGCCCACATCTGCATCAATACCTTGGGCAGCTACCGCTGCGAGTGCCGGGAAaGCTACATCCGGGAAGATGATGGGAAGACATGTACCAGGGGAGACAAATATCCCAATGACACTG___GCCATGAGAAGTCTGAGAACATGGTGAAAGCCGGAACTTGCTGTGCCACATGCAAGGAGTTCTACCAGATGAAGCAGACCGTGCTGCAGCTGAAGCAAAAG___ATTGCTCTGCTCCCCAACAATGCAGCTGACaTGGGCAAGTATATCACTGGTGACAAGGTGCTGGC GRIQQLHLSEDLSPREIQENTFSLQA|dIDECASSNGTLCAHICINTLGSYRCECREsYIREDDGKTCTRGDKYPNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAADmGKYITGDKVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2673 ST7::MET ENSG00000004866.22::ENSG00000105976.16 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ MET ENSG00000105976.16 protein_coding + + chr7:116672196-116798377:+ chr7:116699071:+ chr7:116312250-116438431:+ chr7:116339125:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none ST7_protein(5%)|IPT/TIG_domain(100%),Plexin_repeat(100%),Protein_kinase_domain(100%),Sema_domain(100%) ST7(0%)|PK_Tyr_Ser-Thr(100%),PSI(100%),Pkinase(100%),Sema(100%),TIG(100%) 1 0 2 2938 12014 ENST00000393446.6 ENST00000456159.1 downstream upstream duplicates(1) CTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|ATAAACCTCTCATAATGAAGGCCCCCGCTGTGCTTGCACCTGGCATCCTCGTGCTCCTGTTTACCTTGGTGCAGAGGAGCAATGGGG MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|dKPLIMKAPAVLAPGILVLLFTLVQRSNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Hepatocyte growth factor receptor TK Met P08581 TRUE Brain,Breast,Lung no_match TRUE Testicular Germ Cell Tumors,Lung adenocarcinoma,Liver hepatocellular carcinoma,Brain Lower Grade Glioma TESTICULAR,LUNG,LIVER,CENTRAL_NERVOUS_SYSTEM no_match 116593745,116593745|116593745,116830990,116660683|116593745 TRUE,TRUE|TRUE,FALSE,FALSE|TRUE 116339125,116339125|116371722,116371722,116339125|116339125 TRUE,TRUE|FALSE,FALSE,TRUE|TRUE PARTIALLY,PARTIALLY,YES,PARTIALLY CDS-5UTR,CDS-5UTR,In-frame,5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE met proto-oncogene (hepatocyte growth factor receptor) 1 Yes papillary renal, head-neck squamous cell papillary renal familial papillary renal cancer epithelial oncogene missense 2682 IMMP2L::ENSG00000226965 ENSG00000184903.10::ENSG00000226965.2 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 453 FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:110886593:- chr7:110302700-111202573:- chr7:110526649:- ENSG00000226965 ENSG00000226965.2 lncRNA - - chr7:110108031-110534757:- chr7:110110701:- chr7:109748088-110174814:- chr7:109750758:- chr7:110790148 chr7:110419854 NA NA chr7:110430204 chr7:110059911 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Signal_peptidase__peptidase_S26_(88%)| I-set(100%),Ig_3(100%),LRRCT(100%),LRRNT(100%),LRR_5(100%),LRR_8(100%),Peptidase_S26(11%),fn3(100%),ig(100%)| 0 1 1 8 2 ENST00000405709.7 ENST00000667232.1 upstream downstream duplicates(1) CAGAACAGAAGATCATTAAGAGAGTGATTGCTCTTGAAGGAGATATTGTCAG___AACCATAGGACACAAAAACCGGTATGTCAAAGTCCCCCGTGGTCACATC...TCATCATGGACACAGTTTTGACAGTAATTCTTTTGGGCCG|TTCTGGAGGCTGGGAAGTCCACAATCAAAGCACTAGCATATGATGTCTG___AAAAATTACACA...CTCCAAGCGTTATTACCCCTTCATGAAGATGTTTCAGTGGGACAAGATGTGAAGGTGGAAGACAATGATATTGATGATCCTGACCCTGTGCAAGCCTAAGC HHGHSFDSNSFGP|fwrlgspqskh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2696 ST7::ST7-OT4 ENSG00000004866.22::ENSG00000214188.9 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 450 FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117136235:+ chr7:116593292-116870230:+ chr7:116776289:+ ST7-OT4 ENSG00000214188.9 lncRNA + - chr7:116953899-117098806:+ chr7:116955193:- chr7:116593953-116738860:+ chr7:116595247:- chr7:117138069,chr7:117138069,chr7:117138069,chr7:117138069 chr7:116955352,chr7:116955361,chr7:116955363,chr7:116955381 NA NA chr7:116778123,chr7:116778123,chr7:116778123,chr7:116778123 chr7:116595406,chr7:116595415,chr7:116595417,chr7:116595435 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' low none ST7_protein(48%)| ST7(55%)| 5 2 2 3463 142 ENST00000393449.5 unknown downstream downstream duplicates(2) CGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCtAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAA___TAAT...CTTGGAGATAAATGA___...GTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAA___GTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATA|GTATAGAACTTTGAGACCAGAAGGTATCCTGGAGACATACTTGTCTAAAGCGAAGAAGACAATATTGCGACAAGCAGCCATCCAAAAAGATGAAAAGCGAGAAAGCCATGGTCTTTCCGATGACAGACTCAAAAGGGCTGAGCAG...CATGAGTTCAAGTTAGTAATCAAAATACTTAAGTTAGTATCTGAAAGGTACAAGTTTCCTAACAAAATGAGTACATTATCTCAAGCGTTTTAAAAAGCGTT VEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQH|siel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6132 chr7:117020211-117020319:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2739 UQCRC2::LCMT1 ENSG00000140740.11::ENSG00000205629.12 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 229 TRUE 463 TRUE 163 UQCRC2 ENSG00000140740.11 protein_coding + + chr16:21953288-21983660:+ chr16:21958599:+ chr16:21964609-21994981:+ chr16:21969920:+ LCMT1 ENSG00000205629.12 protein_coding + + chr16:25111731-25178231:+ chr16:25151554:+ chr16:25123052-25189552:+ chr16:25162875:+ chr16:21960954,chr16:21960952 chr16:25148893,chr16:25148888 NA NA chr16:21972275,chr16:21972273 chr16:25160214,chr16:25160209 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Insulinase_(Peptidase_family_M16)(41%)|Leucine_carboxyl_methyltransferase(42%) Peptidase_M16(14%)|LCM(24%) 42 45 60 805 462 ENST00000268379.9 ENST00000399069.8 downstream upstream duplicates(42),mismatches(7) CTTTCTCG___AGATTTTATTCCCTCAAAGTTGCCCCCAAAGTTAAAGCCACAGCTGCGCCTGCAGGAGCACCGCCACAACCTCAGGACCTTGAG___TTTACCAAGTTACCAAATGGCTTGGTGATTGCTTCTTTGGAAAACTATTCTCCTGTATCAAGAATTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCCATTTGCTGCGTCTTACATCCAGTCTG___ACGACAAAAGGAGCTTCATCTTTCAAGATAACCCGTGGAATTGAAGCAGTTGGTGGCAAATTAAG|ATGCAAGCCTCCCCTATCCAGCCCCATTCTAGAACTGCATTCAGAGGACACACTTCAGATGG___ATGGACACATACTGGATTCAAAGAGATATGCCGTTATTGGAGCAGATCTCCGAGACCTGTCTGAACTGGAAGAGAAGCTAAAGAAATGTAACATGAATACACA___ATTGCCAACACTCCTGATAGCTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTG FSRFYSLKVAPKVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLr|CKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2740 UQCRC2::LCMT1 ENSG00000140740.11::ENSG00000205629.12 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 463 TRUE 163 UQCRC2 ENSG00000140740.11 protein_coding + + chr16:21953288-21983660:+ chr16:21958599:+ chr16:21964609-21994981:+ chr16:21969920:+ LCMT1 ENSG00000205629.12 protein_coding + + chr16:25111731-25178231:+ chr16:25164598:+ chr16:25123052-25189552:+ chr16:25175919:+ chr16:21960954,chr16:21960952 chr16:25148893,chr16:25148888 NA NA chr16:21972275,chr16:21972273 chr16:25160214,chr16:25160209 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Insulinase_(Peptidase_family_M16)(41%)|Leucine_carboxyl_methyltransferase(13%) Peptidase_M16(14%)|LCM(0%) 1 0 17 805 544 ENST00000268379.9 ENST00000399069.8 downstream upstream duplicates(5) CAATCTTGAATCATGAAGCTACTAACCAGAGCCGGCTCTTTCTCG___AGATTTTATTCCCTCAAAGTTGCtCCCAAAGTTAAAGCCACAGCTGCGCCTGCAGG...CAAGAATTGGTTTGTTCATTAAAGCAGGCAGTAGATATGAGGACTTCAGCAATTTAGGAACCACCCATTTGCTGCGTCTTACATCCAGTCTG___ACGACAAAAGGAGCTTCATCTTTCAAGATAACCCGTGGAATTGAAGCAGTTGGTGGCAAATTAAG|ATTGCCAACACTCCTGATAGCTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGAGCCATGTTCATAAACTACGAACAG___GTGAACATGGGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGACCTGGCGGGAGTGGAGACCTG RIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLr|LPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2741 UQCRC2::LCMT1 ENSG00000140740.11::ENSG00000205629.12 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 463 TRUE 163 UQCRC2 ENSG00000140740.11 protein_coding + + chr16:21953288-21983660:+ chr16:21953456:+ chr16:21964609-21994981:+ chr16:21964777:+ LCMT1 ENSG00000205629.12 protein_coding + + chr16:25111731-25178231:+ chr16:25164598:+ chr16:25123052-25189552:+ chr16:25175919:+ chr16:21960954,chr16:21960952 chr16:25148893,chr16:25148888 NA NA chr16:21972275,chr16:21972273 chr16:25160214,chr16:25160209 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |Leucine_carboxyl_methyltransferase(13%) |LCM(0%) 0 3 0 739 544 ENST00000268379.9 ENST00000399069.8 downstream upstream none GCAGTGACCGTGTGTCAGAACAATCTTGAATCATGAAGCTACTAACCAGAGCCGGCTCTTTCTCG|ATTGCCAACACTCCTGATAGCTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGA...CCATGTTCATAAACTACGAACAG___GTGAACATGGGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCATTAGAGTCACAG___AAAGAACGGCTCCTGTCGAATGG MKLLTRAGSFS|iantpds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2742 CCDC171::SNAPC3 ENSG00000164989.17::ENSG00000164975.16 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 230 TRUE 464 TRUE 164 CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15695337:+ chr9:15553041-16061661:+ chr9:15695335:+ SNAPC3 ENSG00000164975.16 protein_coding + + chr9:15422734-15465953:+ chr9:15433552:+ chr9:15422732-15465951:+ chr9:15433550:+ chr9:15718436,chr9:15718436,chr9:15718435 chr9:15431355,chr9:15431361,chr9:15431351 NA NA chr9:15718434,chr9:15718434,chr9:15718433 chr9:15431353,chr9:15431359,chr9:15431349 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |snRNA-activating_protein_complex_(SNAPc)__subunit_3(100%) |SNAPC3(100%) 11 12 11 123 546 ENST00000380701.8 ENST00000467062.5 downstream upstream duplicates(9),mismappers(2),mismatches(1) GCACAAGAGAGCTTTGCAAAACTAAATTT___ATTAGAAAAAGAGTATTTCTCCAAAAATAAGAAACTAAATGAAGACATCGAGGAACAGAAGAAAGTAATTATAGACCTTTCAAAGAGACTCCAGTATAATGAAAAAAGTTGCAGTGAATTACAGGAAGAACTAGTAATG___GCTAAGAAGCACCAGGCCTTCCTAGTAGAGACATGTGAAAATAACGTGAAAGAATTGGAATCGATCTTGGACAGCTTTACTGTGTCGGGCCAGTGGACATCAG|GGTTAGAAAAAGGTTCTTGGAACATCGGGAAGAAACCATTACAATAGATCGAGCCTGCAGACAAGAAACATTCGTTTATGAGATG___GAGTCACATGCCATAGGAAAAAAGCCTGAAAATTCAGCAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAG___CACAAAGAACACAAACCATACCAAACAATGCTGGTGTTGGGCAGTCAAAAACTCACACAACTGAGGGATTCAATTCGATGTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGC...GCAAA___GACCTATACAAATCAGCCTTCTTTTATTTTGAAGGAACATTTTATAATGATAAAAGATACCCAGAATGCAGAGATTTGAGCAG___AACTATCATTGAGTGGTCAGAGTCCCATGATAGAG AQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTS|glekgswnigkkplq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2743 CCDC171::SNAPC3 ENSG00000164989.17::ENSG00000164975.16 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 464 TRUE 164 CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15666323:+ chr9:15553041-16061661:+ chr9:15666321:+ SNAPC3 ENSG00000164975.16 protein_coding + + chr9:15422734-15465953:+ chr9:15433552:+ chr9:15422732-15465951:+ chr9:15433550:+ chr9:15718436,chr9:15718436,chr9:15718435 chr9:15431355,chr9:15431361,chr9:15431351 NA NA chr9:15718434,chr9:15718434,chr9:15718433 chr9:15431353,chr9:15431359,chr9:15431349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |snRNA-activating_protein_complex_(SNAPc)__subunit_3(100%) |SNAPC3(100%) 1 0 1 124 546 ENST00000380701.8 ENST00000467062.5 downstream upstream mismatches(1) GTCAAGCAGAAGCTGTTGCTGATTTGGAAATTATCAAGAATGAATTCAAAGAAGTTGAAAGTGCATATGAGCGAGAAAAGCATAATGCACAAGAGAGCTTTGCAAAACTAAATTT|GGTTAGAAAAAGGTTCTTGGAACATCGGGA...ACAAGAAACATTCGTTgAgGAGATG___GAGTCACATGCCATAGaAAAAAAtCCTGAAAATTCAGCAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTG QAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNl|VRKRFLEHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2747 TMCO3::NCBP3 ENSG00000150403.18::ENSG00000074356.17 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 233 TRUE 466 FALSE NA TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113510424:+ chr13:114145336-114208905:+ chr13:114164739:+ NCBP3 ENSG00000074356.17 protein_coding - - chr17:3802158-3846246:- chr17:3822052:- chr17:3705452-3749540:- chr17:3725346:- chr13:113514309 chr17:3825180 NA NA chr13:114168624 chr17:3728474 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sodium/hydrogen_exchanger_family(36%)| Na_H_Exchanger(18%)| 3 3 6 456 285 ENST00000434316.7 ENST00000389005.6 downstream downstream duplicates(4),mismatches(1) TGGGACCTTCAGGACTAAATAGTATTAAG___TCTATTGTGCAAGTGGAGACATTAGGAGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAG___GTGTGGAAGATTTCCTTACAAGGGCCGTGTTACATGACACTGTTAATGATTGCATTTGGCTTGCTGTGGGGGCATCTCTTGCGGATCAAACCCACGCAGAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAG|ATGACAAAAAGGAACTTGGAGCAGCCAGAAGAAGTCAGTATTACATGAAATATGGGAATCCAAATTATGGAGGCATGAAAGGAATTCTTAGCAATTCATG___GAAGCGAAGATATCATTCCCGTCGTATTCAGCGGGACGTGATCAAGAAGAGAGCCCTGATTGGGGATGACGTTGGCTTGACGTCGTATAAACATCGACATTCTG___GGCTAGTGAATGTTCCCG...GAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGACCAGGACATGGATGCAGATGACAGAGTGGTGGTAGAGTACCACGAGGAGCTCCC GPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKE|dDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2751 SH3GL2::ZNF418 ENSG00000107295.10::ENSG00000196724.13 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 234 FALSE NA FALSE NA SH3GL2 ENSG00000107295.10 protein_coding + + chr9:17579066-17797124:+ chr9:17747134:+ chr9:17579064-17797122:+ chr9:17747132:+ ZNF418 ENSG00000196724.13 protein_coding - - chr19:57921882-57935402:- chr19:57928047:- chr19:58433250-58446770:- chr19:58439415:- chr9:17757629 chr19:57929855 NA NA chr9:17757627 chr19:58441223 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BAR_domain(13%)|KRAB_box(1%),Zinc_finger__C2H2_type(100%) BAR(79%)|KRAB(0%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 2 2 5 98 11 ENST00000380607.5 ENST00000396147.6 downstream downstream duplicates(2),mismatches(2) AGCGCGCCGCCCCGCTCGGCCCTCCAGTCCCgCTCCGCCgCCTCCCTCCCGCACAGCAGCCGCCAGCGCGGCCTCCTGCACCATGTCGGTGGCCGGCCTCAAGAAGCAGTTCCATAAAGCCACTCAG___AAAGTGAGTGAGAAGGTTGGAGGAGCTGAAGGAACCAAGCTAGATGATGACTTCAAAGAGATGGAAAGG|GTTGTTGGTGTGGATCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTGGGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCACTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTGTATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAG MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMER|vvgvdqkmrrhllrraflykeclrsallgqvclprrptlvkcvarswetfctwqiirghitsrnctgvrhggincmivqtvrtristlernpieavl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2753 DHTKD1::UPF2 ENSG00000181192.12::ENSG00000151461.20 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHTKD1 ENSG00000181192.12 protein_coding + + chr10:12068954-12123221:+ chr10:12089255:+ chr10:12110953-12165220:+ chr10:12131254:+ UPF2 ENSG00000151461.20 protein_coding - + chr10:11920022-12043170:- chr10:12026670:+ chr10:11962021-12085169:- chr10:12068669:+ chr10:12089491,chr10:12089483,chr10:12089491 chr10:11988991,chr10:11988989,chr10:11988989 NA NA chr10:12131490,chr10:12131482,chr10:12131490 chr10:12030990,chr10:12030988,chr10:12030988 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Dehydrogenase_E1_component(40%)| E1_dh(15%)| 2 1 4 173 12 ENST00000263035.9 unknown downstream upstream duplicates(2),mismatches(3) CTGATGTTCCGTAAAATGCGAGGCTTAAGTGAATTTCCAGAGAATTTCTCAGCCACTGGAGACGTCCTGTCTCACCTGACCTCCTCTGTGGACCTGgACTTTGGGGCGCACCATCCCCTCCATGTGACAATGTTGCCCAATCCCTCGCACCTGGAGGCCGTCAACCCCGTGGCCGTGGGCAAAACTCGCGGCAGGCAGCAGTCTCGCCAAGACGGCGATTACTCTCCAGACAACTCAGCCCAGCCGGGGGACAGGGTCATTTGCTTACAG|GACGAAGTCTCGCTCTTGTCCTCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCAGGGTCAAGTGATTCTCCTGCCTCAGTCCCCCACAAGTAGCTGGGATTACCGGGGCCTGCCACCATGCCCGGCTAATTTTTGCATTTTTAGTAGAGAC...CCTACTTTGGAAAGGTGAATGGATTGGATTAAAACATCGTAGAATCTCTCCACTCTCCAAGATTCTGAGTCCAATCAAAAGCAAATACACACACATACACC LMFRKMRGLSEFPENFSATGDVLSHLTSSVDLdFGAHHPLHVTMLPNPSHLEAVNPVAVGKTRGRQQSRQDGDYSPDNSAQPGDRVICLQ|devsllssrlecngtisahcnlhlpgssdspasvphk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2756 LCMT1::ENSG00000260126 ENSG00000205629.12::ENSG00000260126.2 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LCMT1 ENSG00000205629.12 protein_coding + + chr16:25111731-25178231:+ chr16:25140247:+ chr16:25123052-25189552:+ chr16:25151568:+ ENSG00000260126 ENSG00000260126.2 lncRNA + + chr16:16499533-16664135:+ chr16:16648344:+ chr16:16593390-16757992:+ chr16:16742201:+ chr16:25148888,chr16:25148887 chr16:16636906,chr16:16636902 NA NA chr16:25160209,chr16:25160208 chr16:16730763,chr16:16730759 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Leucine_carboxyl_methyltransferase(57%)| LCM(53%)| 4 0 2 327 4 ENST00000399069.8 ENST00000567465.2 downstream upstream duplicates(4) CTGGCATGACCCTTACATACAGCACTTTGTGAGACTGTCTAAAGAGAGGAAAGCCCCTGAAATCAACAGAG___GATATTTTGCTCGAGTCCATGGTGTCAGTCAGCTTATAAAGGCATTTCTACGGAAGACAGAATGTCATTGTCAAATTGTCAACCTTGGGGCAGGCATGGATACCACCTTCTGGAGATTAAAG___GATGAAGATCTTCTCCCAAGTAAATATTTTGAGGTTGACTTTCCAATGATTGTCACGAGAAAGCTGCACAGTATCAA|TCCCTCCTGGAGATGAAGAAAGAGTTCAGTCACCCTGCTGAGGAGAG...CTCAGTGGGATGGTCTGATGACTTCGTCTCACCCCCCAGGTACCTAGGAAGGTGATGAATGTGAAGGTGGATTCTTCATGGAGCTCCACACTCAGGATCTG WHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIn|pswr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2785 ANKS3::PPL ENSG00000168096.15::ENSG00000118898.16 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 475 TRUE 165 ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4714051:- chr16:4746511-4784379:- chr16:4764052:- PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4892213:- chr16:4932508-5010742:- chr16:4942214:- chr16:4711449 chr16:4893322 NA NA chr16:4761450 chr16:4943323 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 1 0 1 115 59 ENST00000586632.1 ENST00000345988.7 upstream downstream none CAATCATCTGACTGTGGCCCACATCTTGCAGGGAGCCGATATGTGGATTTACTCCCTTGATGGAAGCAGCTGCTGCTGGCCATGAGATAATCGTGCAGTAT...TCTATCGGAGCCCAG|AACATCACCAACGAGCTACTGCGGATTGAACCTGAGAAGACGCGGAGCACGGCTGAGGGCGAAGCCTTCATCCAGGCCCTCCCAGGCAGTGGCACCACACCCCTGCTGAGGACCCaGGTGGAGGACACCAACCGGAAATACGAGCACCTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2786 ANKS3::PPL ENSG00000168096.15::ENSG00000118898.16 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 475 TRUE 165 ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4714051:- chr16:4746511-4784379:- chr16:4764052:- PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4890334:- chr16:4932508-5010742:- chr16:4940335:- chr16:4711449 chr16:4893322 NA NA chr16:4761450 chr16:4943323 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 1 1 0 115 77 ENST00000450067.6 ENST00000592772.1 upstream downstream none CGGGGAGGAGCTGGATGTCCCCCTGGATCTTCACACAGCTGCTTCCATTGGCCAGTATGAAGTGGTGAAGGAGTGTGTGCAGCG___GGAGCCGATATGTGGAT...CCAAGCAGTACGGACACATGAAGATCGTGGCCTTGATGGACACTTACTCGCCCTCTCTGCCCAAGAGCCTCTATCGGAGCCCAG|GGCGCAGAGCCTACAGAGCGCCAAGGCAGCCT...CTTCCACCGCGGCCATGACCACGTGCTGCAGTTCCTAGTCAGCATCCCCAGTTACGAGCCCCAGGAGACAGACAGCCTCAGCCAGATGGAGACCAAGCTGA KQYGHMKIVALMDTYSPSLPKSLYRSP|grrayraprq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2839 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 236 TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762517:+ chr1:40157854-40229586:+ chr1:40228189:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none IPP_transferase(0%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) AAA_33(0%),IPPT(0%),IPT(0%)|Pro_isomerase(6%),TGF_beta(37%) 300 301 300 14999 3165 ENST00000316891.10 ENST00000372830.5 upstream upstream duplicates(216),inconsistently_clipped(1),low_entropy(1),mismatches(101) GAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GTTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAGAAGCTTCCTGCCTGCGGTGCGGCACAG___AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTG AVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|VAPDTKASKARGSRKNKDGQERNWGKSQKVESHTI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2840 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 237 TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39763689:+ chr1:40157854-40229586:+ chr1:40229361:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none IPP_transferase(0%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(10%) AAA_33(0%),IPPT(0%),IPT(0%)|Pro_isomerase(0%),TGF_beta(2%) 241 184 300 14999 8421 ENST00000316891.10 ENST00000356511.6 upstream upstream duplicates(260),low_entropy(3),mismatches(73) TGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTACTGTGTGCAGCTACTATGGGGTACCAG AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|KQEESAITSQPRSWKLT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2841 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762318:+ chr1:40157854-40229586:+ chr1:40227990:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IPP_transferase(0%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) AAA_33(0%),IPPT(0%),IPT(0%)|Pro_isomerase(7%),TGF_beta(43%) 28 8 300 14999 411 ENST00000316891.10 ENST00000467741.2 upstream upstream duplicates(84),mismatches(71) GTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGCAG|GGTGAGCCACCGCACCTGATCAAGGCATCACCGTTGAACCTCCTAAGGGGAAAACATAAGGCTGTGCAATACCAGGAACTGGGATTCTAG___...AGGTTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACA VAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|gepphlikasplnllrgkhkavqyqelgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2842 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39852731:- chr1:40303782-40349183:- chr1:40318403:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39752910:+ chr1:40157854-40229586:+ chr1:40218582:+ chr1:39851432,chr1:39851434 chr1:39749460,chr1:39749458 NA NA chr1:40317104,chr1:40317106 chr1:40215132,chr1:40215130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(47%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(50%) AAA_33(100%),IPPT(84%),IPT(100%)|Pro_isomerase(59%),TGF_beta(100%) 4 0 300 2461 4011 ENST00000316891.10 ENST00000356511.6 upstream upstream duplicates(78),mismatches(66) ATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG___CCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGGCTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAG|GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTTCTTCCTGACATGTGACAAGACAGAC...TTGAG___AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTGG YIESLLWKVLVNTKPQEMGTEKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVAr|stihgqlwpkhqwlsvlpdm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2843 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883320:- chr1:40303782-40349183:- chr1:40348992:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39763689:+ chr1:40157854-40229586:+ chr1:40229361:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(10%) AAA_33(0%),IPPT(0%),IPT(0%)|Pro_isomerase(0%),TGF_beta(2%) 0 1 300 14999 8421 ENST00000316891.10 ENST00000356511.6 upstream upstream duplicates(81),mismatches(58) GGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGC|AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTACTGTGTGCAGCTACTATGGGGTACCAGGGTGG AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSM|qtrrvsnyqpaevleadvelvptadlpavgavdvicrdrrgkvfsgvptvcsyygvpg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2844 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39853970:- chr1:40303782-40349183:- chr1:40319642:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762517:+ chr1:40157854-40229586:+ chr1:40228189:+ chr1:39851432,chr1:39851434 chr1:39749460,chr1:39749458 NA NA chr1:40317104,chr1:40317106 chr1:40215132,chr1:40215130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(29%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) AAA_33(100%),IPPT(81%),IPT(100%)|Pro_isomerase(6%),TGF_beta(37%) 1 0 300 3577 3165 ENST00000316891.10 ENST00000372830.5 upstream upstream duplicates(80),mismatches(66) GTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG|GTTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAGAAGCTTCCTGCCTGCGGTGCGGCACAG___AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTG VDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK|VAPDTKASKARGSRKNKDGQERNWGKSQKVESHTI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2845 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39850122:- chr1:40303782-40349183:- chr1:40315794:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762518:+ chr1:40157854-40229586:+ chr1:40228190:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(64%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) AAA_33(100%),IPPT(91%),IPT(100%)|Pro_isomerase(6%),TGF_beta(37%) 1 0 300 2978 3165 ENST00000316891.10 ENST00000372830.5 upstream upstream duplicates(96),mismatches(66) CAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGA...GTGGTGGTCCCCTTGGAGGTCCTCTGAAGTTCTCTAACCCTTGCATCCTTTGGCTTCATGCTGACCAGG|TTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAGAAGCTTCCTGCCTGCGGTGCGGCACAG___AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTGG GGPLGGPLKFSNPCILWLHADQ|vAPDTKASKARGSRKNKDGQERNWGKSQKVESHTI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2846 RLF::MYCL ENSG00000117000.9::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 238 TRUE 485 TRUE 167 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- chr1:40171194,chr1:40171192 chr1:39902364,chr1:39902365 NA NA chr1:40636866,chr1:40636864 chr1:40368036,chr1:40368037 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) |HLH(100%),Myc_N(4%) 300 300 300 3841 3062 ENST00000372771.5 ENST00000372816.3 downstream downstream duplicates(205),inconsistently_clipped(5),low_entropy(3),mismatches(52) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|rmkklml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2847 RLF::MYCL ENSG00000117000.9::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 239 TRUE 485 TRUE 167 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39901443:- chr1:40361100-40367928:- chr1:40367115:- chr1:40171194,chr1:40171192 chr1:39902364,chr1:39902365 NA NA chr1:40636866,chr1:40636864 chr1:40368036,chr1:40368037 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(97%) |HLH(100%),Myc_N(88%) 300 300 300 3841 1232 ENST00000372771.5 ENST00000397332.3 downstream downstream duplicates(208),low_entropy(6),mismatches(56) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGAGCGGACATGGACTACGACTCGTACCAGCACTATTTCTACGACTATGACTGCGGGGAGGATTTCTACCGCTCCACGGCGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCCACGTCGCCGCCCTGGGGCTTGGGTCCCGGCGCAGGGGACCCGGCCCCCGGGATTGGTCCCCCGGAGCCGTGGCCCGGAGGGTGCACCGGAGACGAAGCGGAATCCCGGGGCCACTCGAAAGGCTGGG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|GADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2848 RLF::MYCL ENSG00000117000.9::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 485 TRUE 167 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897968:- chr1:40361100-40367928:- chr1:40363640:- chr1:40171194,chr1:40171192 chr1:39902364,chr1:39902365 NA NA chr1:40636866,chr1:40636864 chr1:40368036,chr1:40368037 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) |HLH(100%),Myc_N(4%) 6 0 300 3841 3062 ENST00000372771.5 ENST00000372816.3 downstream downstream duplicates(57),mismatches(33) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|NEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQQHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2856 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3683180:+ chr1:3569080-3652765:+ chr1:3599744:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42912157:- chr22:43231418-43411155:- chr22:43308163:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense stop-codon CDS/splice-site 5'UTR/splice-site translocation high none |Fes/CIP4__and_EFC/F-BAR_homology_domain(100%),SH3_domain(100%) |ArfGap(100%),FCH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 24 29 45 80 350 ENST00000378295.9 ENST00000263246.8 downstream downstream duplicates(17),mismatches(3),multimappers(1) GCGAAACCGGGGCCCGCGCCAGGCCAGCCGGGACGGACGCCGATGCCCGGGGCTGCGACGGCTGCAG___GGAACCAGACAGCACCTACTTCGACCTTCCCCAGTCAAGCCGGGGGAATAATGAGGTGGTGGGCGGAACGGATTCCAGCATGGACGTCTTCCACCTGGAGGGCATGACTACATCTGTCATG|GTTTGTCTACAGATTTTGAGCGTTCGAAGTTGACCCCTGACTAAGTATACTTTGCTGCTCCCTCAGCCTTTGAAAAAATGTCTGTCACATATGATGATTCCGTTGGAGTAGAAGTGTCCAGCGACAGCTTCTGGGAG___GTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2857 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 241 TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3683180:+ chr1:3569080-3652765:+ chr1:3599744:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42893613:- chr22:43231418-43411155:- chr22:43289619:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Fes/CIP4__and_EFC/F-BAR_homology_domain(100%),SH3_domain(100%) |ArfGap(100%),FCH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 5 5 16 80 461 ENST00000378295.9 ENST00000263246.8 downstream downstream duplicates(3) GCCCGCGCCAGGCCAGCCGGGACGGACGCCGATGCCCGGGGCTGCGACGGCTGCAG___...GCCCAGTCCACCGCCACCTCCCCTGATGGGGGCACCACGTTTGAGCACCTCTGGAGCTCTCT___GGAACCAGACAGCACCTACTTCGACCTTCCCCAGTCAAGCCGGGGGAATAATGAGGTGGTGGGCGGAACGGATTCCAGCATGGACGTCTTCCACCTGGAGGGCATGACTACATCTGTCATG|GTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCTGCATGAGCGGGCGCGCATCGAGAAGGCGTATGCGCAGCAGCTCACTGAGTGGGCCCGGCGCTGGAGGCAGCTtGTGGAGAAAG___GGCCCCAGTACGGGACCGTGGAGAAGGCCTGGATGGCCTTCATGTCCGAGG AQSTATSPDGGTTFEHLWSSLEPDSTYFDLPQSSRGNNEVVGGTDSSMDVFHLEGMTTSVM|VGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2858 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3652641:+ chr1:3569080-3652765:+ chr1:3569205:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42912157:- chr22:43231418-43411155:- chr22:43308163:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation medium none |Fes/CIP4__and_EFC/F-BAR_homology_domain(100%),SH3_domain(100%) |ArfGap(100%),FCH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 1 77 350 ENST00000378295.9 ENST00000263246.8 downstream downstream none CCGCGCACCCGCCCGGAGGCTCGCGCGCCCGCGAAGGGGACGCAGCGAAACCGGGGCCCGCGCCAGGCCAGCCGGGACGGACGCCGATGCCCGGGGCTGCGACGGCTGCAG|GTTTGTCTACAGATTTTGAGCGTTCGAAGgTGACCCCTGACTAAGTATACTTTGCTGCTCCCTCAGCCTTTGAAAAAATGTCTGTCACATAcGATGATTCCGTTGGAGTAGAAGTGTCCAGCGACAGCTTCTGGGAG___GTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2859 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3652641:+ chr1:3569080-3652765:+ chr1:3569205:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42893613:- chr22:43231418-43411155:- chr22:43289619:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Fes/CIP4__and_EFC/F-BAR_homology_domain(100%),SH3_domain(100%) |ArfGap(100%),FCH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 0 77 461 ENST00000378295.9 ENST00000263246.8 downstream downstream none CCCGGGGCTGCGACGGCTGCAG|GTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCTGCATG...GCAGCTCACTGAGTGGGCCCGGCGCTGGAGGCAGCTtGTGGAGAAAG___GGCCCCAGTACGGGACCGTGGAGAAGGCCTGGATGGCCTTCATGTCCGAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2863 TRIT1::MYCL ENSG00000043514.17::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 489 TRUE 169 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39853970:- chr1:40303782-40349183:- chr1:40319642:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none IPP_transferase(29%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) AAA_33(100%),IPPT(81%),IPT(100%)|HLH(100%),Myc_N(4%) 2 2 72 3577 3062 ENST00000316891.10 ENST00000372816.3 upstream downstream duplicates(9),mismatches(5) CTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCcGgGG...CTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG|AGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGT FRNRATALIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK|rmkklml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2864 TRIT1::MYCL ENSG00000043514.17::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 242 TRUE 489 TRUE 169 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) AAA_33(0%),IPPT(0%),IPT(0%)|HLH(100%),Myc_N(4%) 32 23 69 14999 3062 ENST00000316891.10 ENST00000372816.3 upstream downstream duplicates(14),mismatches(9) TCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|AGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGT SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|rmkklml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2865 TRIT1::MYCL ENSG00000043514.17::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 243 TRUE 489 TRUE 169 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39901443:- chr1:40361100-40367928:- chr1:40367115:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(97%) AAA_33(0%),IPPT(0%),IPT(0%)|HLH(100%),Myc_N(88%) 28 7 85 14999 1232 ENST00000316891.10 ENST00000397332.3 upstream downstream duplicates(8),mismatches(7) TCCGTGGCGGCTGCACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GGAGCGGACATGGACTACGACTCGTACCAGCACTATTTCTACGACTATGACTGCGGGGAGGATTTCTACCGCTCCACGGCGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCCACGTCGCCGCCCTGGGGCTTGGGTCCCGGCGCAGGGGACCCGGCCCCCGGGATTGGTCCCCCGGAGCCGTGGCCCGGAGGGTGCACCGGAGACGAAGCGGAATCCCGGGGCCACTCGAAAGGCTGGGGCAGGAACTACGCCTCCATCATACGCCGTGACT SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|GADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 2867 SMIM11::ENSG00000214955 ENSG00000205670.12::ENSG00000214955.5 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMIM11 ENSG00000205670.12 protein_coding + + chr21:34375480-34416961:+ chr21:34379516:+ chr21:35747779-35789259:+ chr21:35751815:+ ENSG00000214955 ENSG00000214955.5 lncRNA + + chr21:34205055-34325034:+ chr21:34324736:+ chr21:35577356-35697334:+ chr21:35697036:+ chr21:34380087,chr21:34380086,chr21:34380087 chr21:34319700,chr21:34319696,chr21:34319698 NA NA chr21:35752386,chr21:35752385,chr21:35752386 chr21:35692000,chr21:35691996,chr21:35691998 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none FAM165_family(2%)| FAM165(0%)| 31 27 20 1221 157 ENST00000399299.5 ENST00000427022.1 downstream upstream duplicates(19),inconsistently_clipped(2),low_entropy(3),mismatches(13) GGTTTGTGCGCGGCCAGGCGCTGGAGCCTCCGCTGCCGGGAGCA___ATCAGACCTTCCAGCTGCCTCTCATGTACTTGTCTGTTGGGGGCTTGTGTTGATCAGGAGTGAATTCACAGTCTACCATGAATTGGAAG|GTGAAGAGAAGAAGAGTATGAACTACCACGAAACTCATTTCCCTCCGTCCTTCAATCAAATACAATGACCTTCAGCTACTCTCACCATTCTCTACTGAAAACATCCCAACTATCTGGAAAGAACTCACCTAAAGTTCCCCAACATCAAATAAACCACGTTCCAAAAGATTCAGAGCCAGAGAGAAACA MNWK|vkrrrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2868 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 22 28 20 3841 2423 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(14),mismatches(4) GACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGT DGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2869 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844640:- chr1:40303782-40349183:- chr1:40310312:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 4 4 3 3841 1900 ENST00000372771.5 ENST00000316891.10 downstream downstream mismatches(2) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GACCTGGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAATCGTGCAAAGTTTCATCCAG___GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|dlvplsplsma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2870 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39850261:- chr1:40303782-40349183:- chr1:40315933:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(52%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(8%),zf-C2H2_jaz(100%),zf-met(100%) 1 2 3 3841 3471 ENST00000372771.5 ENST00000495175.6 downstream downstream mismatches(1) CGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTTCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCCT GKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|ELASF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2871 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39852876:- chr1:40303782-40349183:- chr1:40318548:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(70%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(15%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 5 3841 2444 ENST00000372771.5 ENST00000316891.10 downstream downstream mismatches(1) ATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAG...GTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGGCTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAG___GAGCTTGCAAGTTTTTGAAGAAAC SEVSSLNYCRSFCQ|PQEMGTEKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2872 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(35%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 2 0 3 3841 1493 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(1),mismatches(1) CGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTG...GTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|TTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAG VSEVSSLNYCRSFCQ|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2873 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 490 TRUE 170 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844218:- chr1:40303782-40349183:- chr1:40309890:- chr1:40174084,chr1:40174120,chr1:40174163,chr1:40174160,chr1:40174162,chr1:40174132 chr1:39866934,chr1:39866986,chr1:39866985,chr1:39866985,chr1:39866985,chr1:39867271 NA NA chr1:40639756,chr1:40639792,chr1:40639835,chr1:40639832,chr1:40639834,chr1:40639804 chr1:40332606,chr1:40332658,chr1:40332657,chr1:40332657,chr1:40332657,chr1:40332943 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 0 1 1 3841 2548 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(1),mismatches(1) CGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACaGCGGCCcTGTCTG...GTCTCATCTTTGAACTACTGCCGGAGCTTCaGCCAG|GaCCACAAGaCTACAGCCACTCCAATAAAaATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGAATGGGCAG___CGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAG VSSLNYCRSFsQ|dHKtTATPIKMPYNEAENKRSYHLCDLCDRIIIGDREWAAHIKSKSHLNQLKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2874 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 491 TRUE 171 AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:49851396:- chr1:48998526-50489626:- chr1:50317068:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50258121:- chr1:50695334-50786864:- chr1:50723793:- chr1:49791143 chr1:50259457 NA NA chr1:50256815 chr1:50725129 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Cytosolic_carboxypeptidase_N-terminal_domain(5%)| Pepdidase_M14_N(0%)| 19 11 9 93 27 ENST00000371839.6 ENST00000641749.1 upstream downstream duplicates(2),mismatches(4) CACCCGCTCCCTACTGCCCCGCGGTCTTCGCGTGAGCTCGGAGACTGAGGGACAACAAAAATGGCGGAGGGGAGCCAGTCGGCGCCTGAGGCAG___GCAATGATATGGGAAATGATGATGCCATTGGAGGGAATGTGAGCAAATATATAGTGCTTCCAACTGGCTATTGTGGACAGCCCAAGAAAGGACATCTTATCTTTGATGCTTGCTTTGAAAGTG|CAGGTAGCTGTCCAAGGGAGAGATTGCTGAAGCTTGGTGGCGGTGATGGTTGTGCATTGGCAGTGAAGGTCCAGAAGTTTCTCCAGTTCTTAAG___AGAGAGGAATCCCTGGCTCAAGAGAATGGAGTCACTTGCCCAGGGTCATCCAACTGAGCTGGTGCCCTTTGCACTCCCCAAGCTGCTT MAEGSQSAPEAGNDMGNDDAIGGNVSKYIVLPTGYCGQPKKGHLIFDACFES|agscprerllklgggdgcalavkvqkflqflrernpwlkrmeslaqghptelvpfalpkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2875 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 491 TRUE 171 AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:49851396:- chr1:48998526-50489626:- chr1:50317068:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50253967:- chr1:50695334-50786864:- chr1:50719639:- chr1:49791143 chr1:50259457 NA NA chr1:50256815 chr1:50725129 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Cytosolic_carboxypeptidase_N-terminal_domain(5%)| Pepdidase_M14_N(0%)| 0 2 2 93 45 ENST00000371839.6 ENST00000641749.1 upstream downstream duplicates(1) CCAGTCGGCGCCTGAGGCAG___GCAATGATATGGGAAATGATGATGCCATTGGAGGGAATGTGAGCAAATATATAGTGCTTCCAACTGGCTATTGTGGACAGCCCAAGAAAGGACATCTTATCTTTGATGCTTGCTTTGAAAGTG|AGAGAGGAATCCCTGGCTCAAGAGAATGGAGTCACTTGtCCAaGGTCATCCAACTGAGCTGGTGCCCTTTGCACTCCCCAAGCTGCTTCTCTCTGGGTTTGGTAAAGGTTTTTTGTCTTTACGAGAAACAG___...GTAGAACAAAGGCAGTCAAGGGTGCAAGGATATTAGAAGCTGTGTTCTGTGAGCTTTCATGAAGGC...___GCGGTACCCGTTGAGGCTGGCGATGGCtATGGCCGCCTCATCATAGTTGGTCATGGTGACAAAGCCGAATCCCTTGCACTTGTTG QSAPEAGNDMGNDDAIGGNVSKYIVLPTGYCGQPKKGHLIFDACFES|ergipgsrewshlskviqlswcplhspscfslglvkvfclyekq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2876 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 491 TRUE 171 AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:49851396:- chr1:48998526-50489626:- chr1:50317068:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50229769:- chr1:50695334-50786864:- chr1:50695441:- chr1:49791143 chr1:50259457 NA NA chr1:50256815 chr1:50725129 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Cytosolic_carboxypeptidase_N-terminal_domain(5%)| Pepdidase_M14_N(0%)| 1 1 0 93 19 ENST00000371839.6 ENST00000641749.1 upstream downstream none CTGAGATCCTACTTTGTGTCATGCACCACGCTGCACTATGGAGTATACAAAGATAAGAGAACAACC___GCAATGATATGGGAAATGATGATGCCATTGGAGGG...GTGCTTCCAACTGGCTATTGTGGACAGCCCAAGAAAGGACATCTTATCTTTGATGCTTGCTTTGAAAGTG|AAGGAGGAACGTGCCGTGACGAGAGAAGGCTGAATGTTTGCTGCCTCTGGAGGAAGTGAGAGCTGCTCAAAGGTGGTGACCACG___GTAGAACAAAGGCAGTCAAGGGTGCAAGGATATTAGAAGCTGTGTTCTGTGAGCTTTCATGAAGGCTGTGGAAGGATCCAG VLPTGYCGQPKKGHLIFDACFES|eggtcrderrlnvcclwrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2877 NR2C2::ANKRD28 ENSG00000177463.16::ENSG00000206560.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NR2C2 ENSG00000177463.16 protein_coding + + chr3:14947583-15053600:+ chr3:15039227:+ chr3:14989090-15095107:+ chr3:15080734:+ ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15766312:- chr3:15708743-15901278:- chr3:15807819:- chr3:15040581,chr3:15040577 chr3:15789345,chr3:15789349 NA NA chr3:15082088,chr3:15082084 chr3:15830852,chr3:15830856 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ligand-binding_domain_of_nuclear_hormone_receptor(79%),Zinc_finger__C4_type_(two_domains)(100%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(96%),Ankyrin_repeats_(many_copies)(100%) Hormone_recep(32%),L51_S25_CI-B8(35%),zf-C4(100%)|Ank(100%),Ank_2(83%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 9 10 15 269 94 ENST00000425241.6 ENST00000399451.6 downstream downstream duplicates(5),mismatches(1) GGAGTTCTGTAACAGCATGGCGAAGCTGGATATAGATGGCTATGAGTATGCATACCTTAAAGCTATAGTTCTCTTTAGCCCCG___ATCATCCAGGTTTGACCAGCACAAGCCAGATTGAAAAATTCCAAGAAAAGGCACAGATGGAGTTGCAGGACTATGTTCAGAAAACCTACTCAGAAGACACCTACCG|GACAATGAAAAGCGAACCCCATTGCACGCCGCAGCTTACCTTGGAGATGCAGAAATCATTGAACTTCTTATTTTATCTG___GAGCTAGAGTTAATGCCAAAGACAGCAAAT...___GAAGCAGTTCAGGTACTTTTGAAGCATTCTGCAGATGTTAATGCTCGA EFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYr|tmksephctpqltlemqkslnflfylelelmpkta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3134 chr3:15697298-15697371:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2882 FNBP4::TRAF6 ENSG00000109920.13::ENSG00000175104.15 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FNBP4 ENSG00000109920.13 protein_coding - - chr11:47716494-47767443:- chr11:47734025:- chr11:47738046-47788995:- chr11:47755577:- TRAF6 ENSG00000175104.15 protein_coding - + chr11:36483769-36510272:- chr11:36495319:+ chr11:36505319-36531822:- chr11:36516869:+ chr11:47733826 chr11:36493229 NA NA chr11:47755378 chr11:36514779 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none WW_domain(48%)| WW(1%)| 8 3 3 382 35 ENST00000263773.10 unknown upstream upstream duplicates(3),mismatches(3) AGAAAATGGAGAAACTG___CAATTGGTGCTGAAAATTCAGAAAAAATAGATGAGAATTCAGATAAAGAGATGGAAGTAGAAGAATCTCCAGAGAAAATAAAAGTACAGACAACACCAAAAGTAGAAGAAGAACAGGATTTGAAA___TTTCAGATTGGAGAACTGGCAAATACCCTGACAAGTAAATTCGAGTTTCTAGGCATTAATAGACAATCCATCTCCAACTTTCATGTGCTGCTCTTACAGACTGAG|GTGGTACACCTGTATCTACTTTGGACATCATCTGCCGAGGCTATACTTCTCCAAAG___GTCCACTCCCGCTGCTGTATTGAGAACAGCCTGGAAGACAAGAATAGAAAGCAGGAGGCCTGTTAGAGAGCTGGTG ENGETAIGAENSEKIDENSDKEMEVEESPEKIKVQTTPKVEEEQDLKFQIGELANTLTSKFEFLGINRQSISNFHVLLLQTE|vvhlyllwtssaeaillqrstpaavlrtawktriesrrpvrel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2895 SHPRH::ENSG00000289911 ENSG00000146414.17::ENSG00000289911.1 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SHPRH ENSG00000146414.17 protein_coding - - chr6:145864245-145964423:- chr6:145918131:- chr6:146185381-146285559:- chr6:146239267:- ENSG00000289911 ENSG00000289911.1 lncRNA - - chr6:63378892-63566230:- chr6:63443758:- chr6:64088797-64276135:- chr6:64153663:- chr6:145916067,chr6:145916069 chr6:63456183,chr6:63456182 NA NA chr6:146237203,chr6:146237205 chr6:64166088,chr6:64166087 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none SNF2-related_domain(100%),linker_histone_H1_and_H5_family(100%)| Linker_histone(100%),SNF2-rel_dom(100%)| 2 1 3 89 9 ENST00000367505.6 ENST00000701584.1 upstream downstream none GAACGACTAAGAGTGCGTGATCCTAGGGAGCCAAAGCCTAATCCGCCTGTTCTTCATATCATTGAACCACATGAG___GTAGAACAAAACCGAATAAAACTACTAAATGATAAAGCTGTTGCTACATCA...AAACTTGGGCAGCTTCTTTACCTAACTAATTTGGAGAAG|GAAACCCTGACTAAGGAATGAAGAAGTCCTACAAAGAGGAGGTCTCAAGTACCAATCAGCAGCCATTTGATGATGGCAG___TTCCAGG...AGCAGACACTGAATCTGCTGGTGTCCTGATCTTGAATATACCAGCCTCCAGAACT___TGTGGTCAACAGAGAACACCTGGGCAGAAGATGAGAGGCTCCcGG KLGQLLYLTNLEK|etltke* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2897 RLF::HEYL ENSG00000117000.9::ENSG00000163909.8 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40202614:+ chr1:40627059-40706593:+ chr1:40668286:+ HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39632715:- chr1:40089107-40105315:- chr1:40098387:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Hairy_Orange(100%),Helix-loop-helix_DNA-binding_domain(100%) |HLH(100%),Hairy_orange(100%) 3 1 1 134 8 ENST00000372771.5 ENST00000372852.4 downstream downstream duplicates(2) GAAAAACCCAGTTCTTCTTAAAATTCTGTCTCAACAGCCAGTAGAAACGGAGGAAG___TCAATAAATTGATTGCACAAGAAGGACCTTCCTTTCTGCAAATGCGAATAAAACATTTGTTGAAATCTAACTGCATCCCCCAGGCTACTGCTTTATCAAAACTATGTGCA...AAATTTaAAATGTGTCATCTTTTCAGCAAGCCTATATCACATGTTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGAG|CCAGATGGCCAGGCCGCTGTCCACCCCCAGCTCTTCGCAGATGCAAGCCAGGAAGAAACgCAGAGGG___ATCATAGAGAAACGGCGTCGAGACCGCATCAACAGTAGCCTTTCTGAATTGCGACGCTTGGTCCCCACTGCCTTTGAGAAACAG___GGCTCTTCCAAGCTGGAGAAAGCCG I*NVSSFQQAYITCLCSMLPNEDAIKE|pdgqaavhpqlfadasqeetqrdhretasrphqq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2908 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 495 TRUE 172 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39763689:+ chr1:40157854-40229586:+ chr1:40229361:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(10%) |Pro_isomerase(0%),TGF_beta(2%) 13 5 4 3841 8421 ENST00000372771.5 ENST00000356511.6 downstream upstream mismatches(3) GGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGTGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTACTGTGTGCAGCTACTATGGGGTACCAGGGTGGGGGATGCCCTGATGAGCACATTTGTCAAATAAAT DGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|KQEESAITSQPRSWKLT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2909 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 495 TRUE 172 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39743216:+ chr1:40157854-40229586:+ chr1:40208888:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(15%) |Pro_isomerase(100%),RRM_1(0%),RRM_5(13%),TGF_beta(100%) 2 2 9 3841 4627 ENST00000372771.5 ENST00000470018.5 downstream upstream duplicates(2),mismatches(1) CGTGGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AATGAATCTGAGCTTTTTGGACGTACAATTCGTGTCAATTTGGCCAAACCAATGAGAATTAAGGAAGGCTCTTCCAGGCCAG___TTTGGTCAGATGATGACTGGTTGAAGAAGTTTTCTGGGAAGACGCTTGAAGAGAATAAAG...TCAGTTCTTCCTGACATGTGACAAGACAGACTGGCTGGATGGCAAGCATGTGGTGTTTGGAGAGGTCACCGAAGGCCTAGATGTCTTGCGGCAAATTGAGG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2910 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 495 TRUE 172 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762517:+ chr1:40157854-40229586:+ chr1:40228189:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) |Pro_isomerase(6%),TGF_beta(37%) 4 2 7 3841 3165 ENST00000372771.5 ENST00000372830.5 downstream upstream duplicates(3),mismatches(2) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAGAAGCTTCCTGCCTGCGGTGCGGCACAG___AAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGaCGTG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VAPDTKASKARGSRKNKDGQERNWGKSQKVESHTI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2911 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 495 TRUE 172 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39752910:+ chr1:40157854-40229586:+ chr1:40218582:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(50%) |Pro_isomerase(59%),TGF_beta(100%) 1 0 7 3841 4011 ENST00000372771.5 ENST00000470213.5 downstream upstream duplicates(3),mismatches(1) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTT MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VYYPWPTLAQTPMALS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2914 PPIE::CAP1 ENSG00000084072.17::ENSG00000131236.18 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39745498:+ chr1:40157854-40229586:+ chr1:40211170:+ CAP1 ENSG00000131236.18 protein_coding + - chr1:40040233-40072649:+ chr1:40060114:- chr1:40505905-40538321:+ chr1:40525786:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/3'-3' medium none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(15%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| Pro_isomerase(0%),RRM_1(100%),RRM_5(100%)| 4 3 5 2916 6009 ENST00000356511.6 unknown downstream downstream duplicates(2) CAAAGCAGAGACCCAGGAG___GGAGAGCCCATTGCTAAAAAGGCCCGCTCAAATCCTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCGGCTGGCCGCATCCAGATGCTCCTGCGTTCTGATGTCGTGCCCATGACAGCAG|GACCAGCAAGCAGCGAGTCAAATGCCTGCACATATGGAGCTGCTCCTGCTAAAGACAAACACACCACAAAGAATCAGCCATGCATCAGAAGGAGGCTTCTTTAAAACGTGCTTCTACATGAAAGTGGGGAGGCAAGGTAATACAGTCAACAGGATACAGAA...___CTTTTGAAGGACTGTCTGCATACCCACGGTGCATGTCAGAGGTATGAGATACTG KAETQEGEPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTA|gpassesnactygaapakdkhttknqpcirrrll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2924 HNRNPC::RPGRIP1 ENSG00000092199.19::ENSG00000092200.13 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNRNPC ENSG00000092199.19 protein_coding - - chr14:21209136-21269494:- chr14:21230319:- chr14:21677295-21737653:- chr14:21698478:- RPGRIP1 ENSG00000092200.13 protein_coding + - chr14:21280083-21351301:+ chr14:21345215:- chr14:21748242-21819460:+ chr14:21813374:- chr14:21227753 chr14:21349880 NA NA chr14:21695912 chr14:21818039 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| RRM_1(100%),RRM_5(100%)| 2 1 5 8291 6 ENST00000336053.10 unknown upstream downstream duplicates(1) CCGGGCTGCTGTAGCAGGAGAGGATGGCAGAATGATTGCTGGCCAGGTTTTAG___ATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGG___CTCCTCTTTTGACTTGGACTATGACTTTCAACGGGACTATTATGATAG|TGGAAAGCAGATGCTTACTGTCCTTGATCAGGATCTTGTCCATTCAGCATGTCGAACAGAAACCGCCTTCGGCCTTGCTGCTCCTGTGGGTCCAGGTCTATTACTGTATTAAGG___GCCCGGGGCTGGGGCAG RAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYDs|gkqmltvldqdlvhsacrtetafglaapvgpgllly* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2927 SMIM11::ENSG00000272657 ENSG00000205670.12::ENSG00000272657.1 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMIM11 ENSG00000205670.12 protein_coding + + chr21:34375480-34416961:+ chr21:34379516:+ chr21:35747779-35789259:+ chr21:35751815:+ ENSG00000272657 ENSG00000272657.1 lncRNA + + chr21:34073592-34360033:+ chr21:34323713:+ chr21:35445892-35732332:+ chr21:35696013:+ chr21:34380087,chr21:34380086,chr21:34380087 chr21:34319700,chr21:34319696,chr21:34319698 NA NA chr21:35752386,chr21:35752385,chr21:35752386 chr21:35692000,chr21:35691996,chr21:35691998 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none FAM165_family(2%)| FAM165(0%)| 1 2 3 1221 7 ENST00000399299.5 unknown downstream upstream duplicates(3) CGCGGCCAGGCGCTGGAGCCTCCGCTGCCGGGAGCA___ATCAGACCTTCCAGCTGCCTCTCATGTACTTGTCTGTTGGGGGCTTGTGTTGATCAGGAGTGAATTCACAGTCTACCATGAATTGGAAG|GCTTCTCCTGAAAAATTAGAAGCTCTGGTAATGCCTGGCCAATATAACCACATCTTAACAGCCACAAGAAGTTCAGGAGCAACTGTTACTGTCAAGAAGGCCTTGCACCAAAGACACATGCAACACATCTCACATCTGTGGTCATCTGCAATGAGGAGCCATCAAGAGATACCACCCTGCCACCAAGAGGTGGAGTCAAATTCTTCTCCCCTTGAATCTGG MNWK|aspeklealvmpgqynhiltatrssgatvtvkkalhqrhmqhishlwssamrshqeippchqevesnssples NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2974 ADARB2::ADARB2-AS1 ENSG00000185736.16::ENSG00000205696.5 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADARB2 ENSG00000185736.16 protein_coding - - chr10:1177313-1737525:- chr10:1737051:- chr10:1223253-1779719:- chr10:1779245:- ADARB2-AS1 ENSG00000205696.5 lncRNA + + chr10:1526637-1556988:+ chr10:1556611:+ chr10:1568832-1599183:+ chr10:1598806:+ chr10:1534839,chr10:1534839,chr10:1534365,chr10:1534830,chr10:1535910,chr10:1534647 chr10:1534830,chr10:1535910,chr10:1534647,chr10:1534839,chr10:1534839,chr10:1534365 NA NA chr10:1577034,chr10:1577034,chr10:1576560,chr10:1577025,chr10:1578105,chr10:1576842 chr10:1577025,chr10:1578105,chr10:1576842,chr10:1577034,chr10:1577034,chr10:1576560 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 2 1 0 61 6 ENST00000381312.6 ENST00000421697.2 upstream upstream none GCCATGGCCTCGGTCCTGGGGAGCGGCAGAGGGTCTGGAGGGCTGAGCAGTCAACTCAAATGCAAGTCCAAGAGGAGGAGGAGGCGGAGGTCCAAGCGGAAAG|CTGTCGAGGATGCCCTGATGTCTGTTCTCACATCACATTGCGCTCCAAGTACCCCGGCTGCAACCAGAGCTCAG...ACATCCACCCTGCCTGCCCATGTCAACAGAGTTGTGTGGGAGCCAGCCGGCCCCCAGGAAGACCCCAGATCTTCCTGCCCCTGACCACAGCTCTGTCCCTG MASVLGSGRGSGGLSSQLKCKSKRRRRRRSKRK|avedalmsvltshcapstpaatra NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 2985 SAP30BP::LLGL2 ENSG00000161526.15::ENSG00000073350.14 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SAP30BP ENSG00000161526.15 protein_coding + + chr17:75667251-75708062:+ chr17:75668104:+ chr17:73663331-73704142:+ chr17:73664184:+ LLGL2 ENSG00000073350.14 protein_coding + - chr17:75525080-75575209:+ chr17:75527818:- chr17:73521161-73571290:+ chr17:73523899:- chr17:75676486,chr17:75676486,chr17:75676486,chr17:75676486,chr17:75676486,chr17:75676486,chr17:75677134,chr17:75677134,chr17:75677274,chr17:75677129,chr17:75677129,chr17:75677334 chr17:75529729,chr17:75529736,chr17:75529737,chr17:75529726,chr17:75529749,chr17:75529745,chr17:75561035,chr17:75561065,chr17:75561022,chr17:75560822,chr17:75560826,chr17:75561026 NA NA chr17:73672566,chr17:73672566,chr17:73672566,chr17:73672566,chr17:73672566,chr17:73672566,chr17:73673214,chr17:73673214,chr17:73673354,chr17:73673209,chr17:73673209,chr17:73673414 chr17:73525810,chr17:73525817,chr17:73525818,chr17:73525807,chr17:73525830,chr17:73525826,chr17:73557116,chr17:73557146,chr17:73557103,chr17:73556903,chr17:73556907,chr17:73557107 NA NA sense antisense stop-codon 3'UTR intron inversion/3'-3' high none none none 529 398 300 6067 1807 ENST00000583737.5 unknown downstream downstream duplicates(357),mismappers(73),mismatches(48) GGAAGAAGAATGTTCTGTCGTCTCTCGCAGTTTACGCGGAAGATTCAGAGCCCGAGTCTGATGGCGAGGCTGGAATCGAGGCGGTGGGCAGCGCGGCTG___GTTGAGAAGCACAATGTTAGATAATGGAAACAGATTCCTTTGGGAGAATAAAGAA|t|GGTGACAGAGCAAGACTCTGCCTCAAAAAAAGAAAAAAAAAAAGTTACTAACAGCTGGGCACAGTGGCTTACACCTGTAATCCCAACGCTTTGGGAGGCTGAAGTGTGAGGGTCACTTGAGTCCAGGAGTTTGAGACCAGCCTGGGCAACATATGGTGAGATCCCATCTCTACAAATTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3005 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 247 TRUE 508 TRUE 173 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60042759:- chr10:61786056-62493248:- chr10:61802517:- chr10:59875637 chr10:60048573 NA NA chr10:61635395 chr10:61808331 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterized_conserved_protein_H4_(DUF2046)(17%)| DUF2046(0%)| 81 74 122 703 509 ENST00000263102.7 ENST00000373827.6 upstream downstream duplicates(100),mismappers(4),mismatches(16) CTCGCCGTTCCGCCTGGAGGAGCTCACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTtACCATC|CAGGGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAGAAGAGCCACTCGTAACAGCGAACGGTCAGTCAAG___GATCATAAGTTTTTACTGCCAGTATTGAGAAATTCGTGGAAGAAATGTCAGCAGGAAGTAAAAATTCACCGAGAAGTGTGTGTGTGTTCGCTGCTTCCACACATTAATGGCATGATTTTTTTTATGCAAAAAGAAAAGA SPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|QGEGFKVKTKKEIRHVEKKSHS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|TRUE|FALSE|TRUE|FALSE,TRUE|TRUE,TRUE|FALSE|TRUE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3006 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 508 TRUE 173 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60042756:- chr10:61786056-62493248:- chr10:61802514:- chr10:59875637 chr10:60048573 NA NA chr10:61635395 chr10:61808331 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterized_conserved_protein_H4_(DUF2046)(17%)| DUF2046(0%)| 32 26 106 703 509 ENST00000263102.7 ENST00000612776.4 upstream downstream duplicates(70),mismatches(10) CTCGCCGTTCCGCCTGGAGGAGCTCACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTtACCATC|GGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAGAAGAGCCACTCGTAACAGCGAACGGTCAGTCAAG___GATCATAAGTTTTTACTGCCAGTATTGAGAAATTCGTGGAAGAAATGTCAGCAGGAAGTAAAAATTCACCGAGAAGTGTGTGTGTGTTCGCTGCTTCC SPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|gegfkvktkkeirhvekkshs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|TRUE|FALSE|TRUE|FALSE,TRUE|TRUE,TRUE|FALSE|TRUE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3007 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 508 TRUE 173 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60044348:- chr10:61786056-62493248:- chr10:61804106:- chr10:59875637 chr10:60048573 NA NA chr10:61635395 chr10:61808331 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Uncharacterized_conserved_protein_H4_(DUF2046)(17%)| DUF2046(0%)| 3 1 123 703 22 ENST00000263102.7 ENST00000616444.4 upstream downstream duplicates(44),mismatches(6) GTCATCTCGCCGTTCCGCCTGGAGGAGCTCACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTtACCATC|GGAGAGGAAGCAAAAAACATTCCTGGTGAATCTGTCACAGAAGAACAATTTACTGATGAAGAAGGCAACCTCATCACCAGAAAA___CAGGGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAG VISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|geeaknipgesvteeqftdeegnlitrkqgegfkvktkkeirhve NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3008 FBXL20::CDK12 ENSG00000108306.13::ENSG00000167258.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 248 TRUE 509 TRUE 174 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39343180:- chr17:37408916-37558776:- chr17:37499433:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39509705:+ chr17:37617739-37723812:+ chr17:37665958:+ chr17:39329207,chr17:39329549,chr17:39328954,chr17:39329009,chr17:39329214,chr17:39329220 chr17:39502038,chr17:39502407,chr17:39502097,chr17:39502215,chr17:39502031,chr17:39502025 NA NA chr17:37485460,chr17:37485802,chr17:37485207,chr17:37485262,chr17:37485467,chr17:37485473 chr17:37658291,chr17:37658660,chr17:37658350,chr17:37658468,chr17:37658284,chr17:37658278 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman F-box-like(19%)|Protein_kinase_domain(51%) F-box(0%),F-box-like(0%)|PK_Tyr_Ser-Thr(31%),Pkinase(38%) 78 110 64 356 4888 ENST00000577399.5 ENST00000559663.2 upstream upstream duplicates(87),mismappers(1),mismatches(23),multimappers(1) AATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA___...AGCAGGTTTGAG___ATGTTCTCAAATAGTGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTACG|TGGGCAAATCAAACTAGCAGATTTTGGACTTGCTCGGCTCTATAACTCTGAAGAGAG___TCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGAGCTGTGG___ATGTATTCTTGGGGAACTATTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGA srfeMFSNSDEAVINKKLPKELLLr|GQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast,Oesophagus,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 3009 FBXL20::CDK12 ENSG00000108306.13::ENSG00000167258.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 509 TRUE 174 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39511529:+ chr17:37617739-37723812:+ chr17:37667782:+ chr17:39329214,chr17:39329220,chr17:39390482,chr17:39390564,chr17:39390401,chr17:39390495,chr17:39362185,chr17:39362517,chr17:39329207,chr17:39329549,chr17:39328954,chr17:39329009,chr17:39352411,chr17:39362315,chr17:39372363,chr17:39390418,chr17:39389601,chr17:39390260,chr17:39390307,chr17:39390310,chr17:39390313,chr17:39390331,chr17:39352268,chr17:39390520,chr17:39352619,chr17:39390499,chr17:39352516,chr17:39352488,chr17:39390357,chr17:39390411,chr17:39390377,chr17:39390552,chr17:39372416 chr17:39502031,chr17:39502025,chr17:39510103,chr17:39510136,chr17:39509941,chr17:39510024,chr17:39510877,chr17:39510845,chr17:39502038,chr17:39502407,chr17:39502097,chr17:39502215,chr17:39493818,chr17:39511014,chr17:39497446,chr17:39493748,chr17:39494321,chr17:39493216,chr17:39494344,chr17:39494344,chr17:39494344,chr17:39494344,chr17:39493145,chr17:39494133,chr17:39494138,chr17:39494138,chr17:39493185,chr17:39493208,chr17:39493208,chr17:39493823,chr17:39493857,chr17:39494004,chr17:39497055 NA NA chr17:37485467,chr17:37485473,chr17:37546735,chr17:37546817,chr17:37546654,chr17:37546748,chr17:37518438,chr17:37518770,chr17:37485460,chr17:37485802,chr17:37485207,chr17:37485262,chr17:37508664,chr17:37518568,chr17:37528616,chr17:37546671,chr17:37545854,chr17:37546513,chr17:37546560,chr17:37546563,chr17:37546566,chr17:37546584,chr17:37508521,chr17:37546773,chr17:37508872,chr17:37546752,chr17:37508769,chr17:37508741,chr17:37546610,chr17:37546664,chr17:37546630,chr17:37546805,chr17:37528669 chr17:37658284,chr17:37658278,chr17:37666356,chr17:37666389,chr17:37666194,chr17:37666277,chr17:37667130,chr17:37667098,chr17:37658291,chr17:37658660,chr17:37658350,chr17:37658468,chr17:37650071,chr17:37667267,chr17:37653699,chr17:37650001,chr17:37650574,chr17:37649469,chr17:37650597,chr17:37650597,chr17:37650597,chr17:37650597,chr17:37649398,chr17:37650386,chr17:37650391,chr17:37650391,chr17:37649438,chr17:37649461,chr17:37649461,chr17:37650076,chr17:37650110,chr17:37650257,chr17:37653308 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium Mitelman |Protein_kinase_domain(44%) |PK_Tyr_Ser-Thr(24%),Pkinase(31%) 1 0 12 336 4418 ENST00000583610.5 ENST00000559663.2 upstream upstream duplicates(2),mismatches(4) CTGAGGAGAGAGCCGAGCTAGCGACGAGCAGTCGTTGCGGCCGCCGGCGCCGCGGGAGGTGGTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|TCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGAGCTGTGG___ATGTATTCTTGGGGAACTATTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGAACTGGCTCAGCTAGAACTGATCAG___CCGACTTTGTGG MRRDVNGVTKSRFE|splhkqshyfvvptsrttarrgtlhtshrclelwmyswgtihkeayfssqsgtgsartdqptl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast,Oesophagus,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 3010 FBXL20::CDK12 ENSG00000108306.13::ENSG00000167258.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 509 TRUE 174 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39509705:+ chr17:37617739-37723812:+ chr17:37665958:+ chr17:39329207,chr17:39329549,chr17:39328954,chr17:39329009,chr17:39352411,chr17:39372363,chr17:39390260,chr17:39390307,chr17:39390310,chr17:39390313,chr17:39390331,chr17:39390418,chr17:39352268,chr17:39390520,chr17:39352619,chr17:39390499,chr17:39352516,chr17:39352488,chr17:39390357,chr17:39390411,chr17:39390377,chr17:39390552,chr17:39372416,chr17:39329214,chr17:39329220 chr17:39502038,chr17:39502407,chr17:39502097,chr17:39502215,chr17:39493818,chr17:39497446,chr17:39493216,chr17:39494344,chr17:39494344,chr17:39494344,chr17:39494344,chr17:39493748,chr17:39493145,chr17:39494133,chr17:39494138,chr17:39494138,chr17:39493185,chr17:39493208,chr17:39493208,chr17:39493823,chr17:39493857,chr17:39494004,chr17:39497055,chr17:39502031,chr17:39502025 NA NA chr17:37485460,chr17:37485802,chr17:37485207,chr17:37485262,chr17:37508664,chr17:37528616,chr17:37546513,chr17:37546560,chr17:37546563,chr17:37546566,chr17:37546584,chr17:37546671,chr17:37508521,chr17:37546773,chr17:37508872,chr17:37546752,chr17:37508769,chr17:37508741,chr17:37546610,chr17:37546664,chr17:37546630,chr17:37546805,chr17:37528669,chr17:37485467,chr17:37485473 chr17:37658291,chr17:37658660,chr17:37658350,chr17:37658468,chr17:37650071,chr17:37653699,chr17:37649469,chr17:37650597,chr17:37650597,chr17:37650597,chr17:37650597,chr17:37650001,chr17:37649398,chr17:37650386,chr17:37650391,chr17:37650391,chr17:37649438,chr17:37649461,chr17:37649461,chr17:37650076,chr17:37650110,chr17:37650257,chr17:37653308,chr17:37658284,chr17:37658278 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low Mitelman |Protein_kinase_domain(51%) |PK_Tyr_Ser-Thr(31%),Pkinase(38%) 0 0 0 336 4888 ENST00000264658.11 ENST00000559663.2 upstream upstream mismatches(1) CTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCcCGCCGCAGCGCCCGGCCCGGGCCGCcCCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|TGGGCAAATCAAAC MRRDVNGVTKSRFE|wanq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast,Oesophagus,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 3011 DOCK5::CDCA2 ENSG00000147459.18::ENSG00000184661.14 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 249 TRUE 510 TRUE 175 DOCK5 ENSG00000147459.18 protein_coding + + chr8:25184689-25418082:+ chr8:25184951:+ chr8:25042204-25275598:+ chr8:25042466:+ CDCA2 ENSG00000184661.14 protein_coding + + chr8:25459199-25507911:+ chr8:25503373:+ chr8:25316715-25365427:+ chr8:25360889:+ chr8:25240001 chr8:25493372 NA NA chr8:25097517 chr8:25350888 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none SH3_domain(2%)| SH3_1(0%),SH3_2(0%),SH3_9(0%)| 75 56 52 323 282 ENST00000276440.12 ENST00000330560.8 downstream upstream duplicates(87),low_entropy(4),mismappers(7),mismatches(6) GAGGCGGCCCGCGGAGTCCAGCGAAGTTTGGCGGAACATGGCGGAAGCGTCTGGGGCACGCAGGAGCGCGGGGCGGCGGCGGCCGGAGCCCGAGGAGCTGTAGCAGCCTTAGTCGCCGCCGCCGCGGGGCGAGGTCGCCGCCATGGCCCGCTGGATCCCGACCAAGAGGCAGAAGTACGGGGTTG|GTTTTAAAAAGTTGCAGAAAGAAGAAAGGAAAGGGAAAGAAAAGTGTTCAGAAATCTTTATATGGGGAAAGAGACATTGCTTCTAAGAAGCCCCTCCTCAGTCCTATTCCCGAGCTGCCTGAAGTCCCTGAGATGACACCTTCCATTCCGAGCATCCGAAGACTGGGTTCAG___GTTATTTCAGTTCAAATGGCAAACTGGAAGAAGTGAAG MARWIPTKRQKYGV|gfkklqkeerkgkekcseifiwgkrhcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3012 DOCK5::CDCA2 ENSG00000147459.18::ENSG00000184661.14 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 510 TRUE 175 DOCK5 ENSG00000147459.18 protein_coding + + chr8:25184689-25418082:+ chr8:25184951:+ chr8:25042204-25275598:+ chr8:25042466:+ CDCA2 ENSG00000184661.14 protein_coding + + chr8:25459199-25507911:+ chr8:25506510:+ chr8:25316715-25365427:+ chr8:25364026:+ chr8:25240001 chr8:25493372 NA NA chr8:25097517 chr8:25350888 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none SH3_domain(2%)| SH3_1(0%),SH3_2(0%),SH3_9(0%)| 0 1 9 323 453 ENST00000276440.12 ENST00000330560.8 downstream upstream duplicates(4) CGAAGTTTGGCGGAACATGGCGGAAGCGTCTGGGGCACGCAGGAGCGCGGGGCGGCGGCGGCCGGAGCCCGAGGAGCTGTAGCAGCCTTAGTCGCCGCCGCCGCGGGGCGAGGTCGCCGCCATGGCCCGCTGGATCCCGACCAAGAGGCAGAAGTACGGGGTTG|GTTATTTCAGTTCAAATGGCAAACTGGAAGAAGTGAAGACTCCTAAAAATCCAGTGAAAAGAAAGGATCTTTTGCGTCATGACCCAGATTTGCATATGCATCAAGGCTATGATAAATATGATGTCTCTGAATTCTGCTCTTATATAAAAAGTTCCTCATCGCTTGGCAATGCTACTTCTGATGAAGATCCAAATACAAATATAATGAACATTAATGAAAATAAAAATATTCCAAAAGCAAAAAATAAGTCAGAAAGTGAAAATGAACCAAAAGCTGG MARWIPTKRQKYGV|gYFSSNGKLEEVKTPKNPVKRKDLLRHDPDLHMHQGYDKYDVSEFCSYIKSSSSLGNATSDEDPNTNIMNINENKNIPKAKNKSESENEPKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3014 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 251 TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48170967:- chr16:48199684-48281479:- chr16:48204878:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |ABC_transporter(25%) |ABC_tran(16%) 37 46 42 269 348 ENST00000394725.3 ENST00000356608.7 upstream downstream duplicates(57),low_entropy(1),mismappers(2),mismatches(11),multimappers(1) GCTCTCGAGAGGCGGCGGCGGCCCAGGGTGTCCCGTCGGTCTCGGCGCCGGGAAGAGGCGGTGGCGCTGCCCGCGGTGGCGGGGGTTGGCGACGGAGCGCGTTGGTGCCAGGACCGGGGTCCGAGGCGCGCTCTCCGCCCACAG|ATTCAACCTAGATCCCTTTGACCGTCACACTGACCAGCAGATCTGGGATGCCTTGGAGAGGACATTCCTGACCAAGGCC___ATCTCAAAGTTCCCCAAAAAGCTGCATACAGATGTGGTGGAAAACGGTGGAAACTTCTCTGTGGGGGAGAGGCAGCTGCTCTGCATTGCCAGGGCTGTGCTTCGCAACTCCAAG___ATCATCCTTATCGATGAAGCCACAGCCTCCATTGACATGGAGACAGACACCCTGATCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3015 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 252 TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48167660:- chr16:48199684-48281479:- chr16:48201571:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |ABC_transporter(3%) |ABC_tran(0%) 4 9 11 269 622 ENST00000394725.3 ENST00000356608.7 upstream downstream duplicates(8),low_entropy(1),mismatches(7) GCGCGCTCTCGAGAGGCGGCGGCGGCCCAGGGTGTCCCGTCGGTCTCGGCGCCGGGAAGAGGCGGTGGCGCTGCCCGCGGTGGCGGGGGTTGGCGACGGAGCGCGTTGGTGCCAGGACCGGGGTCCGAGGCGCGCTCTCCGCCCACAG|ATCATCCTTATCGATGAAGCCACAGCCTCCATTGACATGGAGACAGACACCCTGATCCAGCGCACAATCCGTGAAGCCTTCCAGGGCTGCACCGTGCTCGTCATTGCCCACCGTGTCACCACTGTGCTGAACTGTGACCgCATCCTGGTTATGGGCAATGGGAAG___GTGGTAGAATTTGATCGGCCGGAGGTACTGCGGAAGAAGCCTGGGTCATTGTTCGCAGCCCTCATGGCCACAGCCACTTCTTCACTGAGATAAGGAGATGTGGAGACTTCATGGAGGCTGGCAGCTGAGCTCAGAGGTTCACACAGcTGCAGCTTCGAGGCCCACAGTCTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3016 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48170218:- chr16:48199684-48281479:- chr16:48204129:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |ABC_transporter(16%) |ABC_tran(12%) 0 1 20 269 417 ENST00000394725.3 ENST00000356608.7 upstream downstream duplicates(8),mismatches(5) GCGGCCGTTGCGGGGCGCGCTCTCGAGAGGCGGCGGCGGCCCAGGGTGTCCCGTCGGTCTCGGCGCCGGGAAGAGGCGGTGGCGCTGCCCGCGGTGGCGGGGGTTGGCGACGGAGCGCGTTGGTGCCAGGACCGGGGTCCGAGGCGCGCTCTCCGCCCACAG|ATCTCAAAGTTCCCCAAAAAGCTGCATACAGATGTGGTGGAAAACGGTGGAAACTTCTCTGTGGGGGAGAGGCAGCTGCTCTGCATTGCCAGGGCTGTGCTTCGCAACTCCAAG___ATCATCCTTATCGATGAAGCCACAGCCTCCATTGACATGGAGACAGACACCCTGATCCAGCGCACAATCCGTGAAGCCTTCCAGGGCTGCACCGTGCTCGTCATTGCCCACCGTGTCACCACTGTGCTGAACTGTGACCgCATCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3018 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48167366:- chr16:48199684-48281479:- chr16:48201277:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none none none 1 0 1 269 494 ENST00000394725.3 ENST00000356608.7 upstream downstream duplicates(1),mismatches(3) CCGGGGCGGCCGTTGCGGGGCGCGCTCTCGAGAGGCGGCGGCGGCCCAGGGTGTCCCGTCGGTCTCGGCGCCGGGAAGAGGCGGTGGCGCTGCCCGCGGTGGCGGGGGTTGGCGACGGAGCGCGTTGGTGCCAGGACCGGGGTCCGAGGCGCGCTCTCCGCCCACAG|GTGGTAGAATTTGATCGGCCGGAGGTACTGCGGAAGAAGCCTGGGTCATTGTTCGCAGCCCTCATGGCCACAGCCACTTCTTCACTGAGATAAGGAGATGTGGAGACTTCATGGAGGCTGGCAGCTGAGCTCAGAGGTTCACACAGcTGCAGCTTCGAGGCCCACAGTCTGCGACCTTCTTGTTTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3019 MED1::IKZF3 ENSG00000125686.12::ENSG00000161405.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 253 FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39792933:- chr17:37913971-38020565:- chr17:37949186:- chr17:39434350,chr17:39434350,chr17:39434352,chr17:39434352 chr17:39795607,chr17:39795598,chr17:39795696,chr17:39795606 NA NA chr17:37590603,chr17:37590603,chr17:37590605,chr17:37590605 chr17:37951860,chr17:37951851,chr17:37951949,chr17:37951859 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Mediator_of_RNA_polymerase_II_transcription_subunit_1(22%)|Zinc_finger__C2H2_type(100%) Med1(18%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2HC_2(100%) 56 34 34 1484 107 ENST00000394287.7 ENST00000346872.8 upstream downstream duplicates(54),low_entropy(6),mismatches(5),multimappers(1) GATGAGTTCTGGAGGGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGG___ACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTG___AGCTGTCCGGAGCTTGTACAGCAGCTAAG|ATGATTCAATGAAAGTGAAAGATGAATACAGTGAAAGAGATGAGAATGTTTTAAAGTCAGAACCCATGGGAAATGCAGAAGAGCCTGAAATCCCTTACAGCTATTCAAGAGAATATAATGAATATGAAAACATTAAGTTGGAGAGACATGTTGTCTCATTCGATAGTAGCAGGCCAACCAGTGGAAAGATGAACTGCGATGTGTGTGGATTATCCTGCATCAGCTT MSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 3021 PDE7A::ARMC1 ENSG00000205268.11::ENSG00000104442.10 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 254 TRUE 512 TRUE 177 PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65841371:- chr8:66626569-66754557:- chr8:66753606:- ARMC1 ENSG00000104442.10 protein_coding - - chr8:65602458-65634217:- chr8:65613433:- chr8:66514693-66546452:- chr8:66525668:- chr8:65835803,chr8:65835807 chr8:65618421,chr8:65618422 NA NA chr8:66748038,chr8:66748042 chr8:66530656,chr8:66530657 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 17 67 20 155 446 ENST00000401827.8 ENST00000276569.8 upstream downstream duplicates(33),low_entropy(2),mismatches(6) TGGAAGTGTGTTACCAGCTGCCGGTACTGCCCCTGGACAGGCCGGTCCCCCAGCACGTCCTCAGCCGCCGAGGAGCCATCAGCTTCAGCTCCAGCTCCGCTCTCTTCGGCTGCCCCAATCCCCGGCAGCTCTCTCAG|AACTACAACTCCAGGAGAAACAAAACTTCTGGCCTCTGAAATCTATGACATTCTTCAGTCCTCCAATATGGCAGATGGTGATAGTTTTAATGAGATGAATTCACGTCGAAGGAAAGCTCAATTTTTTCTGGGAACTACAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGCCTTGATGATACG___TCTCGGAGAAATCTATGTGAAGAGGCTTTGTTAAAAATTAAAGGTGT EVCYQLPVLPLDRPVPQHVLSRRGAISFSSSSALFGCPNPRQLSQ|nynsrrnktsgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3022 PDE7A::ARMC1 ENSG00000205268.11::ENSG00000104442.10 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 512 TRUE 177 PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65838474:- chr8:66626569-66754557:- chr8:66750709:- ARMC1 ENSG00000104442.10 protein_coding - - chr8:65602458-65634217:- chr8:65613433:- chr8:66514693-66546452:- chr8:66525668:- chr8:65835803,chr8:65835807 chr8:65618421,chr8:65618422 NA NA chr8:66748038,chr8:66748042 chr8:66530656,chr8:66530657 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none none none 0 2 21 9 446 ENST00000523253.1 ENST00000276569.8 upstream downstream duplicates(5),mismatches(3) ATCAGCTTCAGCTCCAGCTCCGCTCTCTTCGGCTGCCCCAATCCCCGGCAGCTCTCTCAG___ATTTCCATGCCAAAGAGTTTTAAGTATTGATGCTGAACTGA...AAGCTTGAGTTACCTGGAAAATTCATTTATGTGGATGGAACACCAGCTCTTCCAAGGATGCCAA|AACTACAACTCCAGGAGAAACAAAACTTCTGGCCTCTGAAATCTATGACATTCTTCAGTCCTCCAATATGGCAGATGGTGATAGTTTTAATGAGATGAATTCACGTCGAAGGAAAGCTCAATTTTTTCTGGGAACTACAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGCCTTGATGATACG___TCTCGGAGAAATCTATGTGAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCTGTTCAAAGGTGTGTGGTGCGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3026 ITGB6::RBMS1 ENSG00000115221.12::ENSG00000153250.21 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 256 FALSE NA FALSE NA ITGB6 ENSG00000115221.12 protein_coding - - chr2:160099667-160200313:- chr2:160112080:- chr2:160956178-161056824:- chr2:160968591:- RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160287084:- chr2:161128662-161350318:- chr2:161143595:- chr2:160111810,chr2:160111816 chr2:160293561,chr2:160293564 NA NA chr2:160968321,chr2:160968327 chr2:161150072,chr2:161150075 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none EGF-like_domain(100%),Integrin_beta_chain_VWA_domain(100%),Integrin_beta_epidermal_growth_factor_like_domain_1(100%),Integrin_beta_tail_domain(96%),Integrin_plexin_domain(100%)| EGF_2(100%),I-EGF_1(100%),Integrin_B_tail(85%),Integrin_beta(100%),PSI_integrin(100%)| 20 21 24 353 357 ENST00000620391.4 ENST00000348849.8 upstream downstream duplicates(17),mismatches(1) CTACCTGTGGTGACCCCTGTAACTCTAAACG___GAGCTGCATTGAGTGCCACCTGTCAGCAGCTGGCCAAGCCCGAGAAGAATGTGTGGACAAGTGCAAACTAGCTGGTGCGACCATCAGTGAAGAAGAAG___ATTTCTCAAAGGATGGTTCTGTTTCCTGCTCTCTGCAAGGAGAAAATGAATGTCTTATTACATTCCTAATAACTACAGATAATGAGGGGAAAACCATCATTCACAGCATCAATGAAAAAG|CCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAG...___GCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGG___ATTTTATCCTTCACC TCGDPCNSKRSCIECHLSAAGQAREECVDKCKLAGATISEEEDFSKDGSVSCSLQGENECLITFLITTDNEGKTIIHSINEK|aPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Lung squamous cell carcinoma,Bladder Urothelial Carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,BLADDER,HEAD_AND_NECK,BREAST,BLADDER,BLADDER,BLADDER exact 161055690,161051880,161051880,161030485|161051880|161051880|161055690|161025723,160964190,160998493,161025723|161025723 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE,FALSE,FALSE|FALSE 161141555,161174738,161174738,161159998|161223902|161258613|161157241|161132225,161141555,161143595,161133894|161132225 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE,TRUE,FALSE|FALSE PARTIALLY,YES,YES,PARTIALLY,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3027 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 257 TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120193424:- chr3:119883492-120004069:- chr3:119912271:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |7_transmembrane_sweet-taste_receptor_of_3_GCPR(93%) |7tm_3(19%) 10 25 22 564 44 ENST00000264235.13 ENST00000464295.6 upstream downstream duplicates(17),mismatches(1),multimappers(1) GTGAAAAGCCAAGAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCAGGGCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|GATTGTGAAGATGTCCAGTCCCAATCTGAACATTGTGACCTTACTGGGCAGTTGTCTCACTTACAGTAGCGCTTACCTCTTTGGGATTCAGGATGTTTTAGTGGGGAGCTCAATGGAAACTCTCATTCAG___ACAAGACTGTCCATGCTGTGCATTGGGACCTCCCTTGTGTTTGGCCCCATTCTGGGAAAGAGCTGGCGACTCTACAAGGTGTTTACCCAAAGGGTCCCGGA MSGRPRTTSFAESCKPVQQPSAFGSMKVS|rl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 3028 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 258 TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120186783:- chr3:119883492-120004069:- chr3:119905630:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |7_transmembrane_sweet-taste_receptor_of_3_GCPR(61%) |7tm_3(9%) 10 4 9 564 84 ENST00000264235.13 ENST00000464295.6 upstream downstream duplicates(5),mismatches(1),multimappers(1) GAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCAGGGCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|ATTATCAAAGACCTGCAGTTGCTGGGGTTGGTGGCAGCCCTGTTGATGGCTGATGTGATCCTGCTCATGACGTGGGTGCTGACTGATCCCATCCAGTGCCTCCAGATTCTCAGTGTCAGTATGACG___GTGACAGGGAAAGACGTGTCCTGCACTTCGACCAGCACCCACTTCTGTGCTTCCCGGTATTCCGATGTTTGGATTGCTC?CA MSGRPRTTSFAESCKPVQQPSAFGSMKVS|nyqrpavagvggspvdg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 3029 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120193049:- chr3:119883492-120004069:- chr3:119911896:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |7_transmembrane_sweet-taste_receptor_of_3_GCPR(76%) |7tm_3(19%) 1 0 16 564 71 ENST00000264235.13 ENST00000464295.6 upstream downstream duplicates(6),mismatches(1),multimappers(1) GAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCAGGGCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|ACAAGACTGTCCATGCTGTGCATTGGGACCTCCCTTGTGTTTGGCCCCATTCTGGGAAAGAGCTGGCGACTCTACAAGGTGTTTACCCAAAGGGTCCCGGACAAGAGAGTG___ATTATCAAAG MSGRPRTTSFAESCKPVQQPSAFGSMKVS|nktvhavhwdlpcvwphsgkelatlqgvypkgpgqesdyq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 3030 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120185394:- chr3:119883492-120004069:- chr3:119904241:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |7_transmembrane_sweet-taste_receptor_of_3_GCPR(44%) |7tm_3(6%) 1 4 1 564 101 ENST00000264235.13 ENST00000464295.6 upstream downstream none CTTGTTTTGTTTTTTATAGTATACAAAAGGAGTGAAAAGCCAAGAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCA...CCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|GTGACAGGGAAAGACGTGTCCTGCACTTCGACCAGCACCCACTTCTGTGCTTCCCGGTATTCCGATGTTTGGATTGCTCTCATTTGGGGATGCAAG___CTGAAGCAATGGAAGGCATTTGAAG PRTTSFAESCKPVQQPSAFGSMKVS|sdrerrvlhfdqhpllcfpvfrcldcshlgmqaeamegi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 3031 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120173470:- chr3:119883492-120004069:- chr3:119892317:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |7_transmembrane_sweet-taste_receptor_of_3_GCPR(0%) none 0 0 0 564 81 ENST00000264235.13 ENST00000464295.6 upstream downstream mismatches(1) GGCAGCATGAAAGTTAGCA|CTGAAGCAATGGAAGGCATTTGAAGAGGAAAACCAAACAATCAGACGCATGGCCAAATATTTCAGCACTCCCAACAAAAGCTTCCATACCCAGTATGGTGAGGAGGAGAACTGCCACCCGAGGGGAGAGAAAAGCTCCATGGAGAGG GSMKVS|teamegi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 3035 UBE2K::UGDH-AS1 ENSG00000078140.14::ENSG00000249348.2 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 515 TRUE 179 UBE2K ENSG00000078140.14 protein_coding + + chr4:39698109-39782792:+ chr4:39698390:+ chr4:39699729-39784412:+ chr4:39700010:+ UGDH-AS1 ENSG00000249348.2 lncRNA + + chr4:39527720-39594707:+ chr4:39587923:+ chr4:39529340-39596327:+ chr4:39589543:+ chr4:39702294 chr4:39552466 NA NA chr4:39703914 chr4:39554086 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Ubiquitin-conjugating_enzyme(10%)| UQ_con(0%)| 5 40 2 1147 142 ENST00000261427.10 ENST00000504032.1 downstream upstream duplicates(10),mismappers(1) GCGGGCGGAGACATGGCCAACATCGCGGTGCAGCGAATCAAGCGGGAGTTCAAGGAGGTGCTGAAGAGCGAGGAG|GAGGGATGTTCTCCCTTGGAACCAGGCCACCATTCTATGAGGAAGCCAAGCAGCCACATGAAAAGGCCGTATGTAGACATTCTAACTGACAATACTAGCTAAGGTTCCAGCTACTCACCAGCATCAACTATCAGACA___AATTCCTATCATTAATAGAAGAAACTATATGCCAAGTGACAGCCAGTGAAGCAGAACAACAGGAGAAGACGGCGAAGCCAGAAGCAAATTATTTCAATGGAAGAAAAATCCCCTCTCCAGGTTGTTTTCATTGGTAT MANIAVQRIKREFKEVLKSEE|egcsplepghhsmrkpsshmkrpyvdiltdnts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3036 UBE2K::UGDH-AS1 ENSG00000078140.14::ENSG00000249348.2 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 515 TRUE 179 UBE2K ENSG00000078140.14 protein_coding + + chr4:39698109-39782792:+ chr4:39698390:+ chr4:39699729-39784412:+ chr4:39700010:+ UGDH-AS1 ENSG00000249348.2 lncRNA + + chr4:39527720-39594707:+ chr4:39589587:+ chr4:39529340-39596327:+ chr4:39591207:+ chr4:39702294 chr4:39552466 NA NA chr4:39703914 chr4:39554086 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Ubiquitin-conjugating_enzyme(10%)| UQ_con(0%)| 0 4 1 1147 136 ENST00000261427.10 ENST00000504032.1 downstream upstream none CTGAGGCGAGCGCGGCGGCCGGGGTGGgAGTGGCAGTGTTCGTGTGCTCAGGTCTGAATCGCCGAGGGAGGAGGCGGTGGAGGAAGAGGgGGCGGCGGgGG...CCAACATCGCGGTGCAGCGAATCAAGCGGGAGTTCAAGGAGGTGCTGAAGAGCGAGGAG|AATTCCTATCATTAATAGAAGAAACTATATGCCAAGTGACAGCCAGTGAAGCAGAACAACAGGAGAAGACGGCGAAGCCAGAAGCAAATTATTTCAATGGAAGAAAAATCCCCTCTCCAGGTTGTTTTCATTGGTATAAGGATATGAGTTACTTTTTAAAAAGGAACACTAGGCGGCCGGGCACAGTGGCTCACATCTGTAATCCTAGCACTTTGGGAGGCCGAGGTGGATGGATCACAAGGTCAGGAGTTCGAGA NIAVQRIKREFKEVLKSEE|nsyh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3037 GAREM1::DRC7 ENSG00000141441.16::ENSG00000159625.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GAREM1 ENSG00000141441.16 protein_coding - - chr18:32124877-32470882:- chr18:32310193:- chr18:29704840-30050845:- chr18:29890156:- DRC7 ENSG00000159625.15 protein_coding + - chr16:57694793-57731805:+ chr16:57707621:- chr16:57728705-57765717:+ chr16:57741533:- chr18:32288251,chr18:32288254 chr16:57712182,chr16:57712182 NA NA chr18:29868214,chr18:29868217 chr16:57746094,chr16:57746094 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none Cell-cycle_sustaining__positive_selection__(36%)| CABIT(87%)| 8 27 8 145 43 ENST00000269209.7 unknown upstream downstream duplicates(7),mismatches(1) AGAGATTCCGGTACATTATGCAG___GGCAATTCAAGCTGCTGGAACAAGACCGAGATATAAAGGAGCCAGTGCAATATTTCAACAGTGTGGAGGAGGTGGCTAAGGCATTTCCTGAACGCGTGTACGTCATGGAGGATATCACATTCAACGTGAAG|GCTTTCGATGCCCAGGAAGTGCTCATCCTGGGTGCTGTAGCTATGTCCTGTGAATGGGTCGATGAAGAAGTTCTCAGGCACCTCGCGCTTCCCCGATAGCACAAGGACCCAGGAGTGCACCCGCAGGCCGTGCAGGGCATCCGGCTTTGCCTTCTCCGCTTCCTGCCAAGGAAAGGT EIPVHYAGQFKLLEQDRDIKEPVQYFNSVEEVAKAFPERVYVMEDITFNVK|afdaqevlilgavamscewvdeevlrhlalpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3038 FEM1B::KCNG3 ENSG00000169018.6::ENSG00000171126.8 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 260 FALSE NA FALSE NA FEM1B ENSG00000169018.6 protein_coding + + chr15:68277745-68295862:+ chr15:68278665:+ chr15:68570083-68588200:+ chr15:68571003:+ KCNG3 ENSG00000171126.8 protein_coding - - chr2:42442017-42493982:- chr2:42444579:- chr2:42669157-42721122:- chr2:42671719:- chr15:68287085,chr15:68287085 chr2:42470116,chr2:42470119 NA NA chr15:68579423,chr15:68579423 chr2:42697256,chr2:42697259 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(36%)|Ion_transport_protein(79%) Ank(3%),Ank_2(1%)|Ion_trans(1%),Ion_trans_2(100%) 8 16 9 161 85 ENST00000306917.5 ENST00000306078.2 downstream downstream duplicates(11),mismatches(1) TGTTGGAGTTGGCGGCGGCCATGGAGGGCCTGGCTGGCTATGTATACAAGGCGGCCAGCGAGGGCAAGGTGCTGACTCTGGCCGCCTTGCTTCTCAACCGGTCTGAAAGCGACATCCGCTATCTGCTTGGCTATGTCAGCCAGCAGGGAGGGCAGCGCTCCACGCCCCTCATCATCGCAGCCCGCAATGGACACGCAAAGGTGGTACGCTTGCTCTTAGAACATTACCGGGTGCAGACTCAGCAGACTGGCACCGTCCGCTTCGACGG|GATAATTGAAGCTATCTGCATAGGTTGGTTCACTGCCGAGTGCATCGTGAGGTTCATTGTCTCCAAAAACAAGTGTGAGTTTGTCAAGAGACCCCTGAACATCATTGATTTACTGGCAATCACGCCGTATTACATCTCTGTGTTGATGACAGTGTTTACAGGCGAGAACTCTCAACTCCAGAGGGCTGGAGTCACCTTGAGGGTACTTAGAATGATGAGGATTTTTT MEGLAGYVYKAASEGKVLTLAALLLNRSESDIRYLLGYVSQQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDg|IIEAICIGWFTAECIVRFIVSKNKCEFVKRPLNIIDLLAITPYYISVLMTVFTGENSQLQRAGVTLRVLRMMRIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3041 ZNF710::WDR93 ENSG00000140548.10::ENSG00000140527.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 261 FALSE NA FALSE NA ZNF710 ENSG00000140548.10 protein_coding + + chr15:90001324-90082206:+ chr15:90074290:+ chr15:90544556-90625438:+ chr15:90617522:+ WDR93 ENSG00000140527.15 protein_coding + + chr15:89690811-89743638:+ chr15:89727157:+ chr15:90234042-90286869:+ chr15:90270388:+ chr15:90075608 chr15:89722153 NA NA chr15:90618840 chr15:90265384 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%)| zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%)| 8 12 9 471 62 ENST00000268154.9 ENST00000268130.12 downstream upstream duplicates(9),mismatches(3) TGTACACTCGCCCGTGAAGCCATTCAAATGCAAG___GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG|GCACCACATTCAAAAGCCCCCTGGAAGTCTTTGCAAAGATCAAGGACTGCTACGGACTGGGCTCCGGGCAGAATCATTTCATCAAGGACAGTCAGTGGGAGCAGCAAGCTGAGATCTTCAACGCTTCCTACAAGAAGTACCTAGATAGGGAGTGGGAGGAAGAGCCACTCAG___TACGGCCACCTTCTATTTCC VHSPVKPFKCKVCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKFNLKGNLSRHMKVKHGVMDIGLDSQ|gTTFKSPLEVFAKIKDCYGLGSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3174 chr15:90006755-90006841:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3046 LLGL2::RECQL5 ENSG00000073350.14::ENSG00000108469.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 516 FALSE NA LLGL2 ENSG00000073350.14 protein_coding + + chr17:75525080-75575209:+ chr17:75525825:+ chr17:73521161-73571290:+ chr17:73521906:+ RECQL5 ENSG00000108469.15 protein_coding - - chr17:75626845-75667189:- chr17:75631668:- chr17:73622925-73663269:- chr17:73627748:- chr17:75547838,chr17:75547655,chr17:75547577 chr17:75656257,chr17:75656328,chr17:75656002 NA NA chr17:73543919,chr17:73543736,chr17:73543658 chr17:73652337,chr17:73652408,chr17:73652082 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |RecQ_helicase_protein-like_5_(RecQ5)(100%),RecQ_zinc-binding(36%) |RecQ5(100%),RecQ_Zn_bind(0%) 0 0 0 2028 9439 ENST00000392550.8 ENST00000317905.10 downstream downstream inconsistently_clipped(1) GGgCGcCGagGGaCGCCGAGGGACGCCGAGGCCTCGGGCGGGGGCTGGCCCGGGGgTCCAG|GTGCCGCCATGCCGCCATTGCCAAGTACTTCGGGGATGCGCTGCCTGCCTGCGCCAAAGGCTGCGACCACTGCCAGAACCCCACGGCCGTGCGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3047 EIF2AK3::PRKD3 ENSG00000172071.15::ENSG00000115825.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 264 TRUE 517 TRUE 180 EIF2AK3 ENSG00000172071.15 protein_coding - - chr2:88556741-88691518:- chr2:88613724:- chr2:88856259-88991036:- chr2:88913242:- PRKD3 ENSG00000115825.11 protein_coding - - chr2:37250502-37324833:- chr2:37293271:- chr2:37477645-37551976:- chr2:37520414:- chr2:88599812,chr2:88599814 chr2:37321933,chr2:37321932 NA NA chr2:88899330,chr2:88899332 chr2:37549076,chr2:37549075 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) |C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 9 12 6 150 72 ENST00000303236.9 ENST00000234179.8 upstream downstream duplicates(6) CTGCCGGCAGCCGCGGGAGAGCAGGAGCCTCGGGGTCCGGAACCAGACGATGAGACAGAGTTGCGACCGCGCGGCAG___GTCATTAGTAATTATCAGCACTTTAGATGGGAGAATTGCTGCCTTGGATCCTGAAAATCATGGTAAAAAGCAGTGGGATTTGGATGTGGGATCCGGTTgCTTGGTGTCATCCAGCCTTAGCAAACCAGAG|TTTCCAGAGTGTGGATTCTTTGGCATGTATGACAAAATTCTTCTCTTTCGCCATGACATGAACTCAGAAAACATTTTGCAGCTGATTACCTCAGCAGATGAAATACATGAAGGAGACCTAGTGGAAGTGGTTCTTTCAG___CTTTAGCCACAGTAGAAGACTTCCAGATTCGTCCACATACTCTCTATGTACATTCTTACAAAGCTCCTACTTTCTGTGATTACTGTGGTGAGATGCTCTGGGGATTGGTACGTCAAGGACTGAAATGTGAAG___GCTGTGGATTAAATTACCATAAACG LPAAAGEQEPRGPEPDDETELRPRGRSLVIISTLDGRIAALDPENHGKKQWDLDVGSGcLVSSSLSKPE|FPECGFFGMYDKILLFRHDMNSENILQLITSADEIHEGDLVEVVLSALATVEDFQIRPHTLYVHSYKAPTFCDYCGEMLWGLVRQGLKCEGCGLNYHK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Eukaryotic translation initiation factor 2-alpha kinase 3 Other PEK PEK Q9NZJ5 TRUE TRUE Serine/threonine-protein kinase D3 CAMK PKD O94806 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3048 EIF2AK3::PRKD3 ENSG00000172071.15::ENSG00000115825.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 517 TRUE 180 EIF2AK3 ENSG00000172071.15 protein_coding - - chr2:88556741-88691518:- chr2:88613724:- chr2:88856259-88991036:- chr2:88913242:- PRKD3 ENSG00000115825.11 protein_coding - - chr2:37250502-37324833:- chr2:37317179:- chr2:37477645-37551976:- chr2:37544322:- chr2:88599812,chr2:88599814 chr2:37321933,chr2:37321932 NA NA chr2:88899330,chr2:88899332 chr2:37549076,chr2:37549075 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) |C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 3 9 150 12 ENST00000303236.9 ENST00000234179.8 upstream downstream duplicates(5) CGCTGAGGCGCTGCCGGCAGCCGCGGGAGAGCAGGAGCCTCGGGGTCCGGAACCAGACGATGAGACAGAGTTGCGACCGCGCGGCAG___GTCATTAGTAATTATCAGCACTTTAGATGGGAGAATTGCTGCCTTGGATCCTGAAAATCATGGTAAAAAGCAGTGGGATTTGGATGTGGGATCCGGTTgCTTGGTGTCATCCAGCCTTAGCAAACCAGAG|GCTAACTATATGTCAGAAAGCATCAGCTTTTCTCGATGGACCCATTCATCTAATGAAATATGCCTGTACTATTTTAAAAAGCTTTGTATTTCGTCATAGAAAAGTTCATCCCCCCAGAATGAAAATGAGGACATTTGAGAAGGTGATTTAAGGTGTGGACATTTGAGAAGGTGTCCTATCAAATTAGTAAACCAAAGGAA AEALPAAAGEQEPRGPEPDDETELRPRGRSLVIISTLDGRIAALDPENHGKKQWDLDVGSGcLVSSSLSKPE|anymsesisfsrwthssneiclyyfkklciss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Eukaryotic translation initiation factor 2-alpha kinase 3 Other PEK PEK Q9NZJ5 TRUE FALSE Serine/threonine-protein kinase D3 CAMK PKD O94806 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3053 EYA3::RCC1 ENSG00000158161.16::ENSG00000180198.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 518 TRUE 181 EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28035544:- chr1:28296855-28415148:- chr1:28362055:- RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28516725:+ chr1:28832455-28865812:+ chr1:28843237:+ chr1:28032708,chr1:28032715,chr1:28032714 chr1:28513729,chr1:28513722,chr1:28513336 NA NA chr1:28359219,chr1:28359226,chr1:28359225 chr1:28840241,chr1:28840234,chr1:28839848 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Regulator_of_chromosome_condensation_(RCC1)_repeat(100%) |RCC1(100%),RCC1_2(100%) 4 3 8 47 9 ENST00000540618.5 ENST00000373833.10 upstream upstream duplicates(4),mismatches(1) CATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCAAA___ACCTTATGCACATATTCTCTCAGTTCCTGTTTCGGAAACTGCTTACCCTGGACAGACTCAATACCAGACACTACAGCAGACTCAACCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTTTG|CTACATGAATGTGTAAGATCTTGGAGGAAGACAGCAGAGAGAGAGAGAGAGATCAGAGATCCCAGGGTTAAAAGTTGGAGAAATTTCACAGTACATCATCCAAAAGAGGAGTCCAT...TGGAGAG___GACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGAAGG CTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYGLPPF|at* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3054 EYA3::RCC1 ENSG00000158161.16::ENSG00000180198.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 266 TRUE 518 TRUE 181 EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28035544:- chr1:28296855-28415148:- chr1:28362055:- RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28529858:+ chr1:28832455-28865812:+ chr1:28856370:+ chr1:28032708,chr1:28032715,chr1:28032714 chr1:28513729,chr1:28513722,chr1:28513336 NA NA chr1:28359219,chr1:28359226,chr1:28359225 chr1:28840241,chr1:28840234,chr1:28839848 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Regulator_of_chromosome_condensation_(RCC1)_repeat(100%) |RCC1(100%),RCC1_2(100%) 3 3 5 47 516 ENST00000540618.5 ENST00000398958.6 upstream upstream duplicates(3),mismatches(1) GTAAGCAATCCAGATGTCAGTGATCAGAAGCCTGAAACATCAAGCCTTGCTTCAAACCTTCCCATGTCAGAGGAAA___TTATGACATGCACCGATTACATCCCTCGCTCATCCAATGATTATACCTCACAAATGTATTCTGCAAA___ACCTTATGCACATATTCTCTCAGTTCCTGTTTCGGAAACTGCTTACCCTGGACAGACTCAATACCAGACACTACAGCAGACTCAACCCTATGCTGTCTACCCTCAGGCAACCCAAACGTATGGACTACCTCCTTTTG|GACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGAAGG___TCTCACACAGGTCCCACAGCACAGAACCCGGC VSNPDVSDQKPETSSLASNLPMSEEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYGLPPF|gqedvtqahs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3055 RCC1::EYA3 ENSG00000180198.17::ENSG00000158161.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 519 TRUE 182 RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28511191:+ chr1:28832455-28865812:+ chr1:28837703:+ EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28017239:- chr1:28296855-28415148:- chr1:28343750:- chr1:28513267,chr1:28513268 chr1:28031642,chr1:28031641 NA NA chr1:28839779,chr1:28839780 chr1:28358153,chr1:28358152 NA NA sense sense unknown intron CDS/splice-site inversion high none none none 1 1 8 22 68 unknown ENST00000540618.5 downstream downstream none GCTAAACTTCAGCTTGCAATACCCCTTTcTTAGACTTTCCAAACAGGCACTTCTGGCCTTGTTCTTTGTGTAGGCAGACAGTA?TGGTTGCCTATCTTAGGAGTACTAGACTGGGTTTGAATCCTGATCCCACCACTTGCTGTTCATGAGACTTTGG|CTTCAAGCACAAATGCCAGCCTGATAT...AGCAGCAGCAGTAGCCAGCATCTCAAcCCAG___GATTATCCCACCTATACTATTCTTtGTCAGAATCAGTACCAGGCCTGCTACCCCAGCTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTGATGCAGAGAGCACCACATTAGCAGCAACCACATAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3056 RCC1::EYA3 ENSG00000180198.17::ENSG00000158161.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 519 TRUE 182 RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28508905:+ chr1:28832455-28865812:+ chr1:28835417:+ EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28017239:- chr1:28296855-28415148:- chr1:28343750:- chr1:28513267,chr1:28513268 chr1:28031642,chr1:28031641 NA NA chr1:28839779,chr1:28839780 chr1:28358153,chr1:28358152 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 0 0 0 350 68 ENST00000398958.6 ENST00000540618.5 downstream downstream low_entropy(1) TTtGGAGAGAAGACGATCTGCACTTCGCATTTTGGCATTGACATTTAATTTTAGGGTCCTTTATATAGAAGGGAGAGTAG|CTTCAAGCACAAATGCCAGCCTGATATCTACTTCTTCTACAATTGCCAATATTCCAGCAGCAGCAGTAGCCAGCATCTCAAACCAG___GATTATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3058 DHX30::SMARCC1 ENSG00000132153.15::ENSG00000173473.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 267 FALSE NA FALSE NA DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47841178:+ chr3:47844399-47891685:+ chr3:47882668:+ SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47670717:- chr3:47626759-47823596:- chr3:47712207:- chr3:47841378 chr3:47674556 NA NA chr3:47882868 chr3:47716046 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Myb-like_DNA-binding_domain(100%),SWIRM-associated_domain_at_the_C-terminal(100%),SWIRM-associated_region_1(100%) |Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),SWIRM-assoc_1(100%),SWIRM-assoc_3(100%) 5 5 4 171 12 ENST00000445061.6 ENST00000254480.10 downstream downstream duplicates(4) CGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGGGCCTATCCCGCTCTTTAGGCCGGGAAGAAGAGGAGGACGAGGAGGAAGAGCTAGAAGAAGGGACCATAGATGTTACCGACTTCTTGTCCATGACCCAGCAGGATTCCCACGCTCCACTCAGGGACTCAAG|AGTAAAGGTGCTAGTGCTGGAAGAGAATGGACTGAACAGGAGACCCTTCTACTCCTGGAG___GCCCTGGAGATGTACAAGGATGATTGGAACAAAGTGTCGGAACATGTTGGAAGTCGTACTCAGGATGAAT...CTTCCCATTGAGGACCCATACCTTGAGAATTCAGATGCTTCCCTTGGGCCTTTGGCCTACCAGCCTGTCCCCTTCAGTCAGTCAGGAAATCCAGTTATGAGT EPTMPPTSWRQLNPESIRPGGPGGLSRSLGREEEEDEEEELEEGTIDVTDFLSMTQQDSHAPLRDSr|vkvlvleenglnrrpfyswrpwrctrmigtkcrnmlevvlrm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3062 ACTN4::CDH13 ENSG00000130402.14::ENSG00000140945.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 269 TRUE 521 TRUE 183 ACTN4 ENSG00000130402.14 protein_coding + + chr19:38647649-38731589:+ chr19:38647907:+ chr19:39138289-39222229:+ chr19:39138547:+ CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83032010:+ chr16:82660570-83834245:+ chr16:83065615:+ chr19:38692246,chr19:38692242,chr19:38692244 chr16:82973053,chr16:82973026,chr16:82973048 NA NA chr19:39182886,chr19:39182882,chr19:39182884 chr16:83006658,chr16:83006631,chr16:83006653 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Calponin_homology_(CH)_domain(1%)|Cadherin_domain(100%),Cadherin_prodomain_like(65%) CH(0%)|Cadherin(100%),Cadherin_pro(65%),Cu-binding_MopE(100%) 2 3 8 1567 27 ENST00000252699.7 ENST00000567109.6 downstream upstream duplicates(1),mismatches(4) GGCGGGAGCGGACAGGCTGGgGGGCGAGCGAGAGGCGGCGGAATGGTGGACTACCACGCGGCGAACCAGTCGTACCAGTACGGCCCCAGCAGCGCGGGCAATGGCGCTGGCGGCGGGGGCAGCATGGGCGACTACATGGCCCAGGAGGACGACTGGGACCGGGACCTGCTGCTGGACCCGGCCTGGGAGAAGCAGCAGCGCAAG|TGACCTTCAGTGACTGTAAGGGAAACGACAAGCTACGCTATGAGGTCTCaAGCCCATACTTCAAGGTGAACAGCGATGGCGGCTTAGTTGCTCTGAGAAACATAACTGCAGTGGGCAAAACTCTGTTCGTCCATGCACGGACCCCCCATGCGGAAGATATGGCAGAACTCGTGATTGTCGGGGGGAAAGACATCCAGG MVDYHAANQSYQYGPSSAGNGAGGGGSMGDYMAQEDDWDRDLLLDPAWEKQQRK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3182 chr16:83508346-83508408:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3063 ACTN4::CDH13 ENSG00000130402.14::ENSG00000140945.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 521 TRUE 183 ACTN4 ENSG00000130402.14 protein_coding + + chr19:38647649-38731589:+ chr19:38647907:+ chr19:39138289-39222229:+ chr19:39138547:+ CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83125385:+ chr16:82660570-83834245:+ chr16:83158990:+ chr19:38692246,chr19:38692242,chr19:38692244 chr16:82973053,chr16:82973026,chr16:82973048 NA NA chr19:39182886,chr19:39182882,chr19:39182884 chr16:83006658,chr16:83006631,chr16:83006653 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Calponin_homology_(CH)_domain(1%)|Cadherin_domain(99%) CH(0%)|Cadherin(81%),Cadherin_pro(65%),Cu-binding_MopE(100%) 0 3 1 1567 30 ENST00000252699.7 ENST00000567109.6 downstream upstream mismatches(1) CTGAGGCGGGAGCGGACAGGCTGGTGGGCGAGCGAGAGGCGGCGGAATGGTGGACTACCACGCGGCGAACCAGTCGTACCAGTACGGCCCCcGCAGCGCGGGCAA...CGACTGGGACCGGGACCTGCTGCTGGACCCGGCCTGGGAGAAGCAGCAGCGCAAG|GATATATTTAAATTTGCAAGAACTTCTCCTGTCCCAAGACAAAAGAGGTCCATTGTGGTATCTCCCATTTTAATTCCAGAGAATCAGAGACAGCCTTTCCCAAGAGATGTTGGCAAG___GTAGTCGATAG DWDRDLLLDPAWEKQQRK|DIFKFARTSPVPRQKRSIVVSPILIPENQRQPFPRDVGKVVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3182 chr16:83508346-83508408:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3065 PSME4::ZFP64 ENSG00000068878.15::ENSG00000020256.20 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSME4 ENSG00000068878.15 protein_coding - - chr2:53864069-53970993:- chr2:53892808:- chr2:54091206-54198130:- chr2:54119945:- ZFP64 ENSG00000020256.20 protein_coding - + chr20:52051663-52204308:- chr20:52151046:+ chr20:50668202-50820847:- chr20:50767585:+ chr2:53890332 chr20:52149538 NA NA chr2:54117469 chr20:50766077 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Proteasome-substrate-size_regulator__mid_region(100%)| BLM10_mid(100%)| 1 3 7 882 134 ENST00000404125.6 unknown upstream upstream duplicates(5),mismatches(1) GCAGTTAATTACTTTTCTATCATTAGAAGACAGAAAAGGAAAAGATAAGTTTAATCCACGACGTTTTTGtCTCTTTAAG___GGTATATTCAGGAATTTTGATGATGCCTTCCTGCCAGTTCTGAAGCCCCATTTAGAACATTTGGTTGCAGATaCACATGAAAGCACCCAGCGATGTGTTGCAGAAATTATAGCTGGTTTAATCAGAGGTTCTAAGCACTGGACATTTGAAAAG|AAATGCCAGGATTGTCAGTCTGAAGTTTCAAAATGAAAACAACAGTGGGATGGATCACTTTATCACTTTAGGTACCACATCTATTTAATGTGACTGTGGAGGAGGTAAGATGATTGTGTGACGTTTATGAAAG...___CACTAATCTGGAATGGAG QLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADtHESTQRCVAEIIAGLIRGSKHWTFEK|kcqdcqsevsk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3066 MAP4::DHX30 ENSG00000047849.22::ENSG00000132153.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 270 TRUE 522 TRUE 184 MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47914817:- chr3:47892180-48130762:- chr3:47956307:- DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47840877:+ chr3:47844399-47891685:+ chr3:47882367:+ chr3:47897135 chr3:47837624 NA NA chr3:47938625 chr3:47879114 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) |DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%) 1 6 4 211 117 ENST00000395734.8 ENST00000445061.6 upstream upstream duplicates(2) CACAAACACAAAAAGGAATAAGTGAGGATTCCCATTTAGAATCTCTGCAGGATGTGGGGCAGTCAGCTGCACCTACTTTCATGATTTCACCAG___AAACCaTCACAGGAACGGGGAAAAAGTGCAGCTTGCCGGCCGAGGAGGATTCTGTGTTAGAAAAACTAGGGGAAAGGAAACCATGCAACAGTCAACCTTCTGAGCTTTCTTCAGAGACCTCAG|GGTTGGGGTCTGCTAGGTCCCCGGAATGAGTTGTTTGACGCAGCCAAATACCGAGTGCTAGCTGATCGCTTTGGCTCCCCTGCCGACAGCTGGTGGCGTCCGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGG QTQKGISEDSHLESLQDVGQSAAPTFMISPETiTGTGKKCSLPAEEDSVLEKLGERKPCNSQPSELSSETS|glgsarspe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1226 chr3:47849555-47849629:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3067 MAP4::DHX30 ENSG00000047849.22::ENSG00000132153.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 522 TRUE 184 MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47909038:- chr3:47892180-48130762:- chr3:47950528:- DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47840877:+ chr3:47844399-47891685:+ chr3:47882367:+ chr3:47897135 chr3:47837624 NA NA chr3:47938625 chr3:47879114 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) |DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%) 1 1 5 11 117 ENST00000426837.6 ENST00000445061.6 upstream upstream none GTCCCGAGGACTTACTCCACTTTTGCCAAAGTCTACAATCCAGGAACAAGAGAGACATAAGCAACTGAAGTCCGCTG|GGTTGGGGTCTGCTAGGTCCCCGGAATGAGTTGTTTGACGCAGCCAAATACCGAGTGCTAGCTGATCGCTTTGGCTCCCCTGCCGACAGCTGGTGGCGTCCGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGG SRGLTPLLPKSTIQEQERHKQLKSA|glgsarspe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1226 chr3:47849555-47849629:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3071 MIPOL1::ENSG00000286099 ENSG00000151338.21::ENSG00000286099.1 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37500138:+ chr14:37667099-38048330:+ chr14:37969343:+ ENSG00000286099 ENSG00000286099.1 lncRNA + + chr14:40630006-40905513:+ chr14:40767815:+ chr14:41099211-41374718:+ chr14:41237020:+ chr14:37509772,chr14:37509707,chr14:37509707,chr14:37509773 chr14:40759545,chr14:40759545,chr14:40759547,chr14:40759543 NA NA chr14:37978977,chr14:37978912,chr14:37978912,chr14:37978978 chr14:41228750,chr14:41228750,chr14:41228752,chr14:41228748 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 6 2 0 63 4 ENST00000537471.7 ENST00000651539.1 downstream upstream duplicates(3),inconsistently_clipped(1) AGGAACTGGCTACTCAACTGCAACAAGCTCTGACAGAGCGAGCAAATATGGAATTACAACTTCAACATGCCAGAGAGGCCTCCCAAGTGGCCAATGAAAAAGTTCAAAA|GCTGCTATGAAGAAATACCCAAGACTGGGTACTTTCTCAACTTTCAAATTGAGCTGTTCAGAATGTGTGAAACAATTTTAAGGTAAG ELATQLQQALTERANMELQLQHAREASQVANEKVQk|ll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3072 YTHDF2::EYA3 ENSG00000198492.16::ENSG00000158161.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28031677:- chr1:28296855-28415148:- chr1:28358188:- chr1:28746357,chr1:28746354 chr1:28031767,chr1:28031770 NA NA chr1:29072869,chr1:29072866 chr1:28358278,chr1:28358281 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none YT521-B-like_domain(100%)| YTH(100%)| 5 1 0 317 3 ENST00000542507.5 unknown downstream downstream mismatches(1) AATAACTATAACCCCAAAGATTTTGACTGGAATCTGAAACATGGCCGGGTTTTCATCATTAAGAGCTACTCTGAGGACGATATTCACCGTTCCATTAAGTA...CTACAACACATGTGCAGGTGTGTGGTCCCAGGACAAATGGAAGGGTCGTTTTGATGTCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTCGCCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATTATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAG|CATTGGTGTGTACTTCAGTTCCTCACCAGACTAATCTCTAAAGA YNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK|hwcvlqfltrlisk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 29070498|29064850 TRUE|FALSE 28304985|28304985 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3078 UBE3B::MYH11 ENSG00000151148.14::ENSG00000133392.18 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE3B ENSG00000151148.14 protein_coding + + chr12:109477402-109536705:+ chr12:109503190:+ chr12:109915207-109974510:+ chr12:109940995:+ MYH11 ENSG00000133392.18 protein_coding - - chr16:15703135-15857028:- chr16:15721634:- chr16:15796992-15950885:- chr16:15815491:- chr12:109503975 chr16:15722826 NA NA chr12:109941780 chr16:15816683 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none IQ_calmodulin-binding_motif(100%)|Myosin_tail(43%) IQ(100%)|Myosin_tail_1(24%) 1 0 3 89 13 ENST00000434735.6 ENST00000300036.6 downstream downstream duplicates(3),mismatches(1) GCTTTTCAAAAGTCGGCATCAGTCCGGAATATTCTCAGGCCTGTCGGGGGTAAACGGGTCGACTCTGCAGAAGTCCAGAAGGTTTGCAACATCTGTGTCCTCTACCAGACCTCGCTGACAACTCTCACACAGATTCGGCTGCAGATACTCACAG|TTGTTAGCCGAGGAGAAAAACATCTCTTCCAAATACGCGGATGAGAGGGACAGAGCTGAGGCAGAAGCCAGGGAGAAGGAAACCAAGGCCCTGTCCCTGGCTCGGGCCCTTGAAGAGGCCTTGGAAGCCAAAGAGGAACTCGAGCGGACCAACAAAATGCTCAAAGCCGAAATGGAAGcCCTGGTCAGCTCCAAGGATGACGTGGGCAAGAAC___GTCCATGAGCTGGAGAAGTCCAAGCGGGCCCTGGAGACCCAGATGGAGGAGATGAAGACGCAGCTGGAAGAGCTGGAGGACGAGCTGCAAGCCACGGAGGACGCCAAACTGCGGCTGGAAGTCAAC AFQKSASVRNILRPVGGKRVDSAEVQKVCNICVLYQTSLTTLTQIRLQILT|vvsrgekhlfqirg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 11, smooth muscle 1 AML leukaemia_lymphoma fusion translocation 3082 ENSG00000286099::CCDC92B ENSG00000286099.1::ENSG00000277200.2 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286099 ENSG00000286099.1 lncRNA + + chr14:40630006-40905513:+ chr14:40767896:+ chr14:41099211-41374718:+ chr14:41237101:+ CCDC92B ENSG00000277200.2 protein_coding - - chr17:2720801-2749652:- chr17:2735168:- chr17:2624095-2652946:- chr17:2638462:- chr14:40804438,chr14:40804436 chr17:2740123,chr17:2740125 NA NA chr14:41273643,chr14:41273641 chr17:2643417,chr17:2643419 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation high none none |CCDC92(100%) 0 1 1 4 4 ENST00000651539.1 ENST00000614400.2 downstream downstream none CAGGCTGCTATGAAGAAATACCCAAGACTGGGTACTTTCTCAACTTTCAAATTGAGCTGTTCAGAATGTGTGAAACAATTTTAAG|GTGGGGCCCAGGCCTGGGTTGCCATGGATA...GTTTTTCCCAGaCaTTTGCAGGACCCAAACCTTCTCgGTCCCCAGCCTAGACTTGGGGATAGTCACTCCTTGGCTGGTGAGCAGAGTGCAGGATGTCAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3086 DHX33::NUP88 ENSG00000005100.13::ENSG00000108559.13 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 525 FALSE NA DHX33 ENSG00000005100.13 protein_coding - - chr17:5440917-5468982:- chr17:5448809:- chr17:5344237-5372302:- chr17:5352129:- NUP88 ENSG00000108559.13 protein_coding - - chr17:5359668-5420164:- chr17:5377214:- chr17:5262963-5323484:- chr17:5280509:- chr17:5447550,chr17:5447554 chr17:5379586,chr17:5379587 NA NA chr17:5350870,chr17:5350874 chr17:5282881,chr17:5282882 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%)| DEAD(100%),HA2(100%),Helicase_C(100%)|Nup88(26%),Rab5-bind(70%),Rabaptin(100%) 2 2 2 183 367 ENST00000225296.8 ENST00000700530.1 upstream downstream duplicates(4) TTCATATCCAGCGAGGGGGATCACATGACCCTGCTCAATATCTATCGGACCTTCAAAAACCTAGGCGGAAATAAG___GATTGGTGCAAAGAGAATTTTGTCAACAGCAAGAATATGACGCTGGTAGCAGAAGTCAGAGCACAGCTGAGGGACATCTGCTTAAAG|GAAAAGTATCTCAGCCTTCAGCTTTTCTTCTACGTGGTCTGCTGCTGTCCGCACATTAATGATGTCCTCgCGGTATTTTAATACCAACTCCCGCAGTGCCTGGATTCAAGAAACAAATGATTATTGGGTTTGTGAGAGTGAAAGGAAATAAAG FISSEGDHMTLLNIYRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQLRDICLK|EKYLSLQLFFYVVCCCPHINDVLaVF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3087 CHKA::CASC3 ENSG00000110721.12::ENSG00000108349.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 272 FALSE NA FALSE NA CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68097019:- chr11:67820326-67888911:- chr11:67864486:- CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40161753:+ chr17:38296571-38328424:+ chr17:38318006:+ chr11:68084597,chr11:68084600,chr11:68084189 chr17:40145308,chr17:40145305,chr17:40145286 NA NA chr11:67852064,chr11:67852067,chr11:67851656 chr17:38301561,chr17:38301558,chr17:38301539 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Choline/ethanolamine_kinase(6%)|CASC3/Barentsz_eIF4AIII_binding(100%) APH(43%),Choline_kinase(0%)|Btz(100%) 6 9 7 335 12470 ENST00000265689.9 ENST00000264645.12 upstream upstream duplicates(11),multimappers(2) CCACATCAGTGTCATCAG___AGGCGGCCTTAGCAACATGCTGTTCCAGTGCTCCCTACCTGACACCACAGCCACCCTTGGTGATGAGCCTCGGAAAGTGCTCCTGCGGCTGTATGGAGCGATTTTGCAGATG|GGTGAAGAAGGTGAATACAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCAGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAGAAGAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAG___GAGAGCACAGAGCCTGTGGAGAACAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATG HISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQM|GEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3098 ENSG00000258450::MGAT2 ENSG00000258450.1::ENSG00000168282.6 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000258450 ENSG00000258450.1 lncRNA - - chr14:49629291-49629890:- chr14:49629699:- chr14:50096009-50096608:- chr14:50096417:- MGAT2 ENSG00000168282.6 protein_coding + + chr14:49620799-49623481:+ chr14:49620875:+ chr14:50087517-50090199:+ chr14:50087593:+ NA NA NA NA NA NA NA NA sense sense unknown intron 5'UTR inversion medium none |N-acetylglucosaminyltransferase_II_(MGAT2)(100%) |MGAT2(100%) 1 3 4 18 118 ENST00000556657.1 ENST00000305386.4 upstream upstream duplicates(4) GGCTAATTTTTGTATTTTTTGTAGAGATGAGTTTTGCCATGTTGCCTAGGCTGGTCTCGAACTTCTGGGCTCAAACAgTCCACCTGCCTTGGCCTCCTAAA...TGGAATTATAAGCATGAGCCACTGTGCCCAGCCTAATTTTTTTCATAATTTACTTTTTCTCTGGAGCATAGATTCAAAATGCCCTGAATATATGCTCTCTA...CAGTGCTTAAAAATATAATACACTTGGCTGGGTGCAGTGGCTCACGCCCGTAATCCCAGCACTTTGGTAGGCCAAGGTAGGAGGACAGCTTGAATCCAGGAGTTGGAGACCAGCCTGGACAACAAAGTGAGA|CCTGTAAGGATGAGAGCGCAGAGGACGCAGGGCCGCTGGAGGCGCAGGTAACGAAGCTAGGGTGCGGTTGGGACCGCGGCTGAGCTTTTTCCGGGACCCGTGGTGCTGAATGGAGAGGACGGAGACGAAGCCGAGCCGCGGCTCCTAGCGGCGGCGCCGAcGCTCGAGCTGTAGCTGCCAGGCGAGGATGTGTGGAGCGCAGGCGGCG...AGGTCTCGGGCCCCAGGcCCCCCGGGGCCCGGGATGAGTTAGCGAGGGCAGCCGCGGGGGCCAGTTCCGACCGTGACAGGCCAAGGCGACGGCCGCCGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3100 RARA::CEP112 ENSG00000131759.18::ENSG00000154240.18 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40331396:+ chr17:38465432-38513895:+ chr17:38487648:+ CEP112 ENSG00000154240.18 protein_coding - - chr17:65635537-66192133:- chr17:66012773:- chr17:63631655-64188251:- chr17:64008891:- chr17:40331869,chr17:40331888,chr17:40331887,chr17:40331885,chr17:40331892,chr17:40331884,chr17:40331883,chr17:40331894,chr17:40331895,chr17:40331897,chr17:40331898,chr17:40331899,chr17:40331896,chr17:40331900,chr17:40331886,chr17:40331888,chr17:40331900,chr17:40331879,chr17:40331882,chr17:40331898,chr17:40331895,chr17:40331884,chr17:40331881,chr17:40331897,chr17:40331865,chr17:40331889,chr17:40331898,chr17:40331880,chr17:40331885 chr17:66012966,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012923,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012965,chr17:66012923,chr17:66012967,chr17:66012967,chr17:66012921,chr17:66012922,chr17:66012923,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66012967,chr17:66013404,chr17:66012967,chr17:66012923 NA NA chr17:38488121,chr17:38488140,chr17:38488139,chr17:38488137,chr17:38488144,chr17:38488136,chr17:38488135,chr17:38488146,chr17:38488147,chr17:38488149,chr17:38488150,chr17:38488151,chr17:38488148,chr17:38488152,chr17:38488138,chr17:38488140,chr17:38488152,chr17:38488131,chr17:38488134,chr17:38488150,chr17:38488147,chr17:38488136,chr17:38488133,chr17:38488149,chr17:38488117,chr17:38488141,chr17:38488150,chr17:38488132,chr17:38488137 chr17:64009084,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009041,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009083,chr17:64009041,chr17:64009085,chr17:64009085,chr17:64009039,chr17:64009040,chr17:64009041,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009085,chr17:64009522,chr17:64009085,chr17:64009041 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none none none 1 3 2 2314 2206 ENST00000254066.10 unknown downstream downstream duplicates(1) CCTCCCTTCTGACTGTGGCCGCTTGGCATGGCCAGCAACAGCAGCTCCTGCCCGACACCTGGGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACACCATCCCCAGCCA|AGAGACCAACATTTAAATTCAGGAAATGCAGAGAACCTTTGCAAAGTACTCCACAAGAAGACCATCCCCAAGACACATAGTT...CCAAGGTCGAAATAAAAAAAATATTAAAGACAGCTAGAGAGAAGGGGCACcTCACCTACAAAGTGAAGCCCATgAGGGTAACAGCAGACCTCTCAGAAGAAACCGTACAAATCAGAAGACATTGGGGGCCTATATTCAGCATTCTTAAGGAAAAGAATTTTCAGCCAAGAGTTTTATGTCCCAGCAAAtTtAGCTTTATAAGCAAAGGAGAAATAAGAaCCTTTTCAGACAAGCAAATGCTAAG MASNSSSCPTPGGGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPA|krptfkfrkcreplqstpqedhpqdt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3104 ENSG00000258377::ENSG00000258450 ENSG00000258377.1::ENSG00000258450.1 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000258377 ENSG00000258377.1 lncRNA - - chr14:49620815-49623480:- chr14:49620881:- chr14:50087533-50090198:- chr14:50087599:- ENSG00000258450 ENSG00000258450.1 lncRNA - + chr14:49629291-49629890:- chr14:49629693:+ chr14:50096009-50096608:- chr14:50096411:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron inversion/5'-5' medium none none none 1 0 3 127 18 ENST00000555043.1 unknown upstream upstream duplicates(1),mismatches(1),multimappers(1) CTCGGCTTCGTCTCCGTCCTCTCCATTCAGCACCACGGGTCCCGGAAAAAGCTCAGCCGCGGTCCCAACCGCACCCTAGCTTCGTTACCTGCGCCTCCAGCGGCCCTGCGTCCTCTGCGCTCTCATCCT|TACAGGTCTCACTTTGTTGTCCAGGCTGGTCTCCAACTCCTGGATTCAAGCTGTCCTCCTACCTTGGCCTACCAAAGTGCTGGGATTACGGGCGTGAGCCACTGCACCCAGCCAAGTGTATTATATTTTTAAG...TAGAGAGCATATATTCAGGGCATTTTGAATCTATGCTCCAGAGAAAAAGTAAATTATGAAAAAAATTAGGCTGGGCACAGTGGCTCATGCTTATAATTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3114 PLXNB2::PPP6R2 ENSG00000196576.16::ENSG00000100239.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLXNB2 ENSG00000196576.16 protein_coding - + chr22:50274979-50307646:- chr22:50289807:+ chr22:50713408-50746075:- chr22:50728236:+ PPP6R2 ENSG00000100239.16 protein_coding + + chr22:50343304-50445090:+ chr22:50422254:+ chr22:50781733-50883519:+ chr22:50860683:+ chr22:50290278 chr22:50421763 NA NA chr22:50728707 chr22:50860192 NA NA antisense sense unknown CDS CDS/splice-site deletion/read-through/3'-3' low none |SIT4_phosphatase-associated_protein(61%) |SAPS(54%) 4 3 2 20 21 unknown ENST00000359139.7 downstream upstream duplicates(7),mismatches(2) CTGCAGTCCGGGCCCTGCGAGAACACACTGAGGCCCATACCGGCGCGTGGCCGCCGCACTGGATATCGCCGTGGAAGGGCTTGTAGAAGATGTCACGGGCCTCCCGGGTGCCTGTGTAACAGGCGTTGCGGTTGGCCTCCATCTTGGCGTGCACCTTGTCCAGCGGGAACAGGCAGAGGCCCGCACCGGGCCCCCCACTGCTCCGGCTGTCTCTGCTGAAGACAGCATATAGCACCCTGCCAGAGCCAGGCGCAGCCACGGAGGCGGCCAGGCAGGTGCCAAAGGCAGCGGCGTGGATGTCGGGGTCCCGGCACTGCAGGTCCATCTCCAG|GACAGAGGGCTTGGTGGACTCCTTTTCTCAGGGACTGGAAAGGTCATACGCTGTCAGCAGCAGCGTACTACACGGCATCGAGCCTCGGCTGAAGGACTTCCACCAGCTCCTGCTCAACCCGCCCAAG___AAGAAAGCGATCCTGACCACCATTGGTGTGCTGGAGGAGCCCCTGGGGAATGCCCGTCTGCATGGCGCCCGCCTCATGGCAGCACTGCTGCACACAAACACACCCAGCATCAACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3134 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 273 TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39694988:+ chr17:37844167-37886679:+ chr17:37851241:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 14 22 4 715 629 ENST00000323571.9 ENST00000584601.5 downstream upstream duplicates(221),low_entropy(1) CGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|GTGGCAAAGCAAAGCTATATTCAAGACCACATGCAAAGCTACTCCCTGAGCAAAGAGTCACAGATAAAACGGGGGCACCAGTAGAATGGCCAGGACAAACGCAGTGCAGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 3135 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 274 TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219517:+ chr17:38375556-38440388:+ chr17:38375769:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39694988:+ chr17:37844167-37886679:+ chr17:37851241:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 0 3 6 700 629 ENST00000585043.5 ENST00000578199.5 downstream upstream duplicates(80) AGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAGGTCGGAAAGAGGCCGGGGCGGCTGG|GTGGCAAAGCAAAGCTATATTCAAGACCACATGCAAAGCTACTCCCTGAGCAAAGAGTCACAGATAAAACGGGGGCACCAGTAGAATGGCCAGGACAAACGCAGTGCAGCACAGAGACTCAGACCC...ACATGTACTGTTGTGGACATGCACAAAAGTGAG___TGTGCACCGGCACAGACATGAAGCTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGCTGCCAGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 3136 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39706990:+ chr17:37844167-37886679:+ chr17:37863243:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 0 5 1 715 3344 ENST00000323571.9 ENST00000541774.5 downstream upstream duplicates(35) CGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|TGTGCACCGGCACAGACATGAAGCTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGCTGCCAGGTGGTGCAGGGAAACCTGGAACTCACCTACCTGCCCACCAATGCCAGCCTGTCCTTCCTGCAG___GATATCCAGGAGGTGCAGGGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAGGTCCCACTGCAGAGGCTGCGGATTGTGCGAGGCACCCAGCTCTTTGAGGACAACTATGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 3137 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219517:+ chr17:38375556-38440388:+ chr17:38375769:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39706990:+ chr17:37844167-37886679:+ chr17:37863243:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 0 1 1 700 3344 ENST00000585043.5 ENST00000541774.5 downstream upstream duplicates(6) CGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAGGTCGGAAAGAGGCCGGGGCGGCTGG|c|GgGCACCGGCACAGACATGAAGCTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGCTGCCAGGTGGTGCAGGGAAACCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 3138 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219920:+ chr17:38375556-38440388:+ chr17:38376172:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39706990:+ chr17:37844167-37886679:+ chr17:37863243:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 1 0 1 159 3344 ENST00000583130.5 ENST00000541774.5 downstream upstream duplicates(4) CAAAAAGGGAGACGGGAACGGAGGACCTGTTGGGAACGGCTAATTAGCAGGATGCTGTGG|TGTGCACCGGCACAGACATGAAGCTGCGGCTCCCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 3139 PRCC::ATP6V1G3 ENSG00000143294.15::ENSG00000151418.12 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRCC ENSG00000143294.15 protein_coding + + chr1:156750610-156800815:+ chr1:156791792:+ chr1:156720402-156770607:+ chr1:156761584:+ ATP6V1G3 ENSG00000151418.12 protein_coding - + chr1:198523222-198540945:- chr1:198540588:+ chr1:198492352-198510075:- chr1:198509718:+ chr1:156793041,chr1:156793042 chr1:198539802,chr1:198539794 NA NA chr1:156762833,chr1:156762834 chr1:198508932,chr1:198508924 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none Mitotic_checkpoint_regulator__MAD2B-interacting(54%)| PRCC(36%),PWWP(100%)| 7 10 2 580 99 ENST00000271526.9 unknown downstream upstream duplicates(134),mismatches(5),multimappers(1) CCTTGGATGCCTAAGCCTGGGGACGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAATGCCGCTGGTGCTTATTATCAG___GATTATTACAGTGGTGGCTACTATCCTGCACAGGACCCGGCCCTGGTCCCCCCCCAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGCA|CTTGTCCTTGGCCCGTTTTTCTGCCTGAAGAAGCTGGTGGATCCCCTGAGACTGGCTTGTCATGGTAGTCTGCTCCAAGCAAGTGGCTTCTGTGAAATCTGGGAAGTAATGGGTTCATTTATTCTTTTAGAAATTAACATATAACTCAGATTATTGTGTCAACAGCAAGTTCCAAATGCAGCTGTTTCAAACTGGCTTTATTGGGCTGGATAGCTG PWMPKPGDDYSYNQFSTYGDANAAGAYYQDYYSGGYYPAQDPALVPPQEIAPDASFIDDEA|lvlgpffclkklvdplrlachgsllqasgfceiwevmgsfilleini* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE papillary renal cell carcinoma (translocation-associated) 1 papillary renal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3147 BIRC6::DPY30 ENSG00000115760.16::ENSG00000162961.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32481453:+ chr2:32582091-32844638:+ chr2:32706521:+ DPY30 ENSG00000162961.14 protein_coding - + chr2:31867809-32039805:- chr2:32038671:+ chr2:32092878-32264874:- chr2:32263740:+ chr2:32482285,chr2:32482284 chr2:32038544,chr2:32038540 NA NA chr2:32707353,chr2:32707352 chr2:32263613,chr2:32263609 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Inhibitor_of_Apoptosis_domain(100%)| BIR(100%)| 1 1 5 77 50 ENST00000700518.1 unknown downstream upstream duplicates(42),mismatches(1) CTCCCTTCAACAGTCCTCAGTTCAGTTGCTGGAAACTATAGATGAACCTTTGACACATGACATAACAG___GTGCACCTCCTCTGTCCTCTTTGGAAAAAGATAAAGAAATTGACCTTGAGTTACTTCAGGATCTAATGGAAGTTGACATTGATCCTTTAGATATTGATTTGGAAAAGGACCCTCTTGCAGCCAAGGTTTTTAAG|ACGGAGTCTCACTCTGCCGCCCAGGCTGTAGTGCAGTGGCGCGATCTCAGCTCACTGCAACCTGTCTTCCAGATTCAAGAGATTCTCTGGCCTCAGCCACCCGAACAGATAGGATTACAGTCATCC SLQQSSVQLLETIDEPLTHDITGAPPLSSLEKDKEIDLELLQDLMEVDIDPLDIDLEKDPLAAKVFK|teshsaaqavvqwrdlsslqpvfqiqeilwpqppeqiglqs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 3149 PPP1R12B::SNX27 ENSG00000077157.23::ENSG00000143376.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 276 FALSE NA FALSE NA PPP1R12B ENSG00000077157.23 protein_coding + + chr1:202348699-202592706:+ chr1:202349142:+ chr1:202317827-202561834:+ chr1:202318270:+ SNX27 ENSG00000143376.14 protein_coding + + chr1:151612006-151699091:+ chr1:151683356:+ chr1:151584482-151671567:+ chr1:151655832:+ chr1:202379474,chr1:202379473 chr1:151672705,chr1:151672701 NA NA chr1:202348602,chr1:202348601 chr1:151645181,chr1:151645177 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ankyrin_repeats_(3_copies)(21%)| Ank(0%),Ank_2(0%),Ank_3(0%),Ank_4(0%),Ank_5(0%)| 0 4 2 0 198 ENST00000391959.5 ENST00000368843.8 downstream upstream duplicates(50),mismatches(1) AGCAGCTTCGGCGCTGGCGGGGCTCGCTGACAGAGCAGGAGCCTGCGGAGCGACGAGGCGCGGGGCGGCAGCCGCTGACCAGGCGCGGGAGCCCCAGGGTCCGCTTCGAGGACGGTGCTGTCTTTCTGGCCGCCTGCTCTAGCGGGGACACCGACGAGGTGAGAAAGCTTCTGGCAAGAGGTGCTGATATCAACACGGTCAACGTGGACGGCTTGACAGCCCTGCACCAG|GCAGTCGATGATGTGAAGAAAGGTTACATCAAAGCAGAAGAAAAGTCCTATCAATTACAGAAGCTATACGAACAAAGAAAAATGGTCATG___TACCTCAACATGCTAAGGACTTGTGAGGGCTACAATGAAATCATCTTTCCCCACTGTGCCTGTGACTCCAGGAGGAAGGGGCACGTTATCACAGCCATCAGCATCACGCACTTTAAACTGCATGCCTGCACTGAAGAAG...GCACGAGGAGAGAAGAAGCCCCGATGGGTTAAAATCTTCACcCCATAT___TTCAATTACATGCATGAGTGCTTCGAGAGGGTGTTCTGCGAGCTCAAGTGGAG QLRRWRGSLTEQEPAERRGAGRQPLTRRGSPRVRFEDGAVFLAACSSGDTDEVRKLLARGADINTVNVDGLTALHQ|AVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3153 GNB5::SPATA13 ENSG00000069966.19::ENSG00000182957.16 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNB5 ENSG00000069966.19 protein_coding - - chr15:52115100-52191392:- chr15:52141140:- chr15:52407297-52483589:- chr15:52433337:- SPATA13 ENSG00000182957.16 protein_coding + - chr13:23979805-24307074:+ chr13:24229461:- chr13:24553944-24881212:+ chr13:24803599:- chr15:52140232,chr15:52140234 chr13:24235375,chr13:24235374 NA NA chr15:52432429,chr15:52432431 chr13:24809513,chr13:24809512 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(20%)| WD40(19%)| 2 1 1 65 23 ENST00000261837.12 unknown upstream downstream duplicates(31),mismatches(1) CATTGCTTGTGG___TGGTTTGGATAATAAGTGTTCTGTGTACCCCTTGACGTTTGACAAAAATGAAAACATGGCTGCCAAAAAGAAGTCTGTTGCTATGCACACCAACTACCTGTCGGCCTGCAGCTTCACCAACTCTGACATGCAG|GGGCAGATGAAGTTACTCCATATCCTACCCTTGAGAAGACCCACGGCAGGAGAAGTTCAACAGTTTGCCCCGGTTGCCAGGGATCTTTTAATAATAGAGCCAGGGTCCCAACTCAACTAGAAACATGTGCCAAGAGACTGCAGCTTACCATAGCTCCCTGGAGAGGGG IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ|gqmkllhilplrrptagevqqfapvardlliiepgsqln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3154 ATAD5::ARHGAP23 ENSG00000176208.9::ENSG00000275832.5 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30844916:+ chr17:29158984-29222887:+ chr17:29171934:+ ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38486062:+ chr17:36575523-36668621:+ chr17:36642303:+ chr17:30847342,chr17:30847340,chr17:30847342,chr17:30847340,chr17:30847343 chr17:38483515,chr17:38483515,chr17:38483512,chr17:38483512,chr17:38483514 NA NA chr17:29174360,chr17:29174358,chr17:29174360,chr17:29174358,chr17:29174361 chr17:36639756,chr17:36639756,chr17:36639753,chr17:36639753,chr17:36639755 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |RhoGAP_domain(66%) |RhoGAP(60%) 0 3 1 15 49 ENST00000321990.5 ENST00000633445.2 downstream upstream duplicates(19) CCTGTCCCTAGTTTTGATGAAAGCAG|CGCTGGCAAGACCTCAATGTGATCAGCAGCCTGCTCAAGTCCTTCTTCCGAAAGCTGCCCGAGCCTCTTTTCACTGATG___ACAAATACAACGACTTCATCGAGGCCAACCGCATTGAGGACGCGCGGGAGCGAATGAG...AGCTGCCTGAGCACCTCTGTCCCAGGAGGCAGGGAGTCCGGTGCTGCCCACGACCCCTGTGGCCTTGGAGAAGCCCCGCTCCACTCAGGGCCTCAGTTTCC PVPSFDESs|agktsm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3155 GNB5::ENSG00000273167 ENSG00000069966.19::ENSG00000273167.1 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNB5 ENSG00000069966.19 protein_coding - - chr15:52115100-52191392:- chr15:52141140:- chr15:52407297-52483589:- chr15:52433337:- ENSG00000273167 ENSG00000273167.1 protein_coding + - chr13:23979700-24321031:+ chr13:24229461:- chr13:24553839-24895169:+ chr13:24803599:- chr15:52140232,chr15:52140234 chr13:24235375,chr13:24235374 NA NA chr15:52432429,chr15:52432431 chr13:24809513,chr13:24809512 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(20%)| WD40(19%)| 2 1 1 65 23 ENST00000261837.12 unknown upstream downstream duplicates(31),mismatches(1) CATTGCTTGTGG___TGGTTTGGATAATAAGTGTTCTGTGTACCCCTTGACGTTTGACAAAAATGAAAACATGGCTGCCAAAAAGAAGTCTGTTGCTATGCACACCAACTACCTGTCGGCCTGCAGCTTCACCAACTCTGACATGCAG|GGGCAGATGAAGTTACTCCATATCCTACCCTTGAGAAGACCCACGGCAGGAGAAGTTCAACAGTTTGCCCCGGTTGCCAGGGATCTTTTAATAATAGAGCCAGGGTCCCAACTCAACTAGAAACATGTGCCAAGAGACTGCAGCTTACCATAGCTCCCTGGAGAGGGG IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ|gqmkllhilplrrptagevqqfapvardlliiepgsqln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3156 GPC6::PCDH9-AS2 ENSG00000183098.12::ENSG00000228842.3 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:93545421:+ chr13:93879060-95060274:+ chr13:94197674:+ PCDH9-AS2 ENSG00000228842.3 lncRNA + + chr13:66825169-66915031:+ chr13:66914398:+ chr13:67399301-67489163:+ chr13:67488530:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Glypican(16%)| Glypican(27%)| 3 1 0 43 62 ENST00000377047.9 ENST00000419371.2 downstream upstream duplicates(41) CTCGGAGCTGCGGAGAGGTCCGCCAGGCGTACGGTGCCAAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGATCGCAG___GGGAACACTTAAGAATCTGTCCTCAGGAATATACATGCTGCACCACAGAAATGGAAGACAAGTTAAGCCAACAAAGCAAACTCGAATTTGAAAACCTTGTGGAAGAGACAAGCCATTTTGTGCGCACCACTTTTGTGTCCAGGCATAAGAAATTTGACG|GCCACAGAACTGTAACACTTAGAAGACTCTGTGGAATACGAACACTTCTCTGATTTA...AGGAATATGAGAAAACTTCAAGCAATTCATCTGTATCGGCATGGAGAGGAGGAAAATGAGACTGTAGATATACGTTGCTTTGGATGGCACCAATATGGGCC RSCGEVRQAYGAKGFSLADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFD|ghrtvtlrrlcgirtll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3159 ENSG00000290928::MYO18A ENSG00000290928.1::ENSG00000196535.20 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 538 FALSE NA ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30709811:+ chr17:29036317-29117926:+ chr17:29036829:+ MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%) |IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%) 2 1 0 134 196 ENST00000578070.5 ENST00000527372.7 downstream downstream duplicates(13) TTTTTTTCTAATTTTTGGTTGGTGGCGGCGGTGCTGGGCCAGGGGAAGGAAGGGACACGGAGGCCGCCCTCGCCCCGCCACCTCCTACCAGCTTCCCCCCAGCCCCGGCTCCGGGAGATGTGCCGGGCGGGGGGCCCGGGTTCGCCGAGCCGCAGGAGAGACACGCTGGGCCGACCCCAGAGCGGCGCTGGACAG|CAGCAAAGTGGGGCACCAAGGCCCTGTGCTAAGCACTCATAATCCTCTGGGGGTGCTACCCCTACAAACAGCACCCCCACCATGTTTAACCTAATGAAGAAAGACAAGGACAAAGATGGCGGGCGGAAGGAGAAGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3164 ARID1A::WDTC1 ENSG00000117713.21::ENSG00000142784.16 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27282239:+ chr1:27561123-27635127:+ chr1:27608730:+ chr1:26721355,chr1:26721328 chr1:27280408,chr1:27280406 NA NA chr1:27047846,chr1:27047819 chr1:27606899,chr1:27606897 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |WD_domain__G-beta_repeat(97%) |WD40(15%) 0 4 0 55 102 ENST00000324856.13 ENST00000319394.8 downstream upstream duplicates(33),mismatches(1) AGCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAG|GGTCACTCAGGATGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGA___CTTGCTGGCCTCTGGTTCCGATGACCAGCACACGATTGTGTGGGACCCGCTGCACCACAAGAAGCTGCTCTCCATGCACACGGGACACACCGCAAATATCTTCTCTGTCAAG___TTCCTGCC SHHAPMSPGSSGGGGQPLARTPQ|GHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANIFSVKFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Oesophagus,Pancreas exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 3167 WARS2::AKT3 ENSG00000116874.12::ENSG00000117020.19 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 278 FALSE NA FALSE NA WARS2 ENSG00000116874.12 protein_coding - - chr1:119031216-119140654:- chr1:119140555:- chr1:119573839-119683277:- chr1:119683178:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- chr1:119081668,chr1:119081672 chr1:243827594,chr1:243827595 NA NA chr1:119624291,chr1:119624295 chr1:243990896,chr1:243990897 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |CCCAP(100%),Kinase-like(100%),PH(25%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 3 0 36 93 ENST00000235521.5 ENST00000336199.9 upstream downstream duplicates(27),mismatches(1) CGGAAAGCGCGTGAGCGCTGGAGCTTCATCCGGGCACTTCATAAGGGATCCGCAGCTGCTCCCGCTCTCCAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTAT...AAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGG RKARERWSFIRALHKGSAAAPALQ|eni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 3168 MLLT6::PLXDC1 ENSG00000275023.5::ENSG00000161381.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT6 ENSG00000275023.5 protein_coding + + chr17:38705273-38729795:+ chr17:38707029:+ chr17:36861526-36886048:+ chr17:36863282:+ PLXDC1 ENSG00000161381.14 protein_coding - - chr17:39063313-39154394:- chr17:39078048:- chr17:37219566-37310647:- chr17:37234301:- chr17:38707548,chr17:38707543 chr17:39078263,chr17:39078274 NA NA chr17:36863801,chr17:36863796 chr17:37234516,chr17:37234527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PHD-finger(100%)| PHD(100%),PHD_2(100%)| 3 0 0 716 3 ENST00000621332.5 ENST00000315392.9 downstream downstream duplicates(9) CGAGAACCCGCTGGTCTACTGCGATGGGCACGCGTGCAGCGTGGCCGTCCACCAAG___CTTGCTATGGCATCGTTCAGGTGCCAACGGGACCCTGGTTCTGCCGGAAATGTGAATCTCAGGAGCGAGCAGCCAGGGTG|GCAGAGGGCAGGATGTGCGAGGACTTCCAGGATGAGGACCACGACTCAGCCTCCC ENPLVYCDGHACSVAVHQACYGIVQVPTGPWFCRKCESQERAARV|AEGRMCEDFQDEDHDSAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Pancreas exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (AF17) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3171 MAGI3::SUZ12P1 ENSG00000081026.19::ENSG00000264538.8 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAGI3 ENSG00000081026.19 protein_coding + + chr1:113390515-113685923:+ chr1:113594560:+ chr1:113933137-114228545:+ chr1:114137182:+ SUZ12P1 ENSG00000264538.8 transcribed_unprocessed_pseudogene + + chr17:30731886-30776402:+ chr17:30743301:+ chr17:29058904-29103420:+ chr17:29070319:+ chr1:113612038,chr1:113612039,chr1:113612038 chr17:30741421,chr17:30741419,chr17:30741419 NA NA chr1:114154660,chr1:114154661,chr1:114154660 chr17:29068439,chr17:29068437,chr17:29068437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Guanylate_kinase(100%),WW_domain(50%)| Guanylate_kin(100%),WW(43%)| 1 0 1 88 565 ENST00000307546.14 ENST00000578195.6 downstream upstream duplicates(5) CCTACACTGACACAGGGATGATCTACTTCATTGA___CCACAATACCAAGACAACCACCTGGTTGGATCCTCGTCTTTGTAAGAAAGCCAAAGCCCCTGAAGACTGTGAAGATGGAG|GAAAACATTTAAAGTTGATGATATGTTATCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAG___CTTGTCAGCTCATTTGCAGCTTACATTTTTGGTTTCTTCCACAAAAATGGTATGTACTTAAAAGTAAAT YTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDG|gkhlklmicyqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3172 MAGI3::ENSG00000290928 ENSG00000081026.19::ENSG00000290928.1 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAGI3 ENSG00000081026.19 protein_coding + + chr1:113390515-113685923:+ chr1:113594560:+ chr1:113933137-114228545:+ chr1:114137182:+ ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30743301:+ chr17:29036317-29117926:+ chr17:29070319:+ chr1:113612038,chr1:113612039,chr1:113612038 chr17:30741421,chr17:30741419,chr17:30741419 NA NA chr1:114154660,chr1:114154661,chr1:114154660 chr17:29068439,chr17:29068437,chr17:29068437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Guanylate_kinase(100%),WW_domain(50%)| Guanylate_kin(100%),WW(43%)| 1 0 1 88 565 ENST00000307546.14 ENST00000579526.5 downstream upstream duplicates(5) CCTACACTGACACAGGGATGATCTACTTCATTGA___CCACAATACCAAGACAACCACCTGGTTGGATCCTCGTCTTTGTAAGAAAGCCAAAGCCCCTGAAGACTGTGAAGATGGAG|GAAAACATTTAAAGTTGATGATATGTTATCAAAAGTAGAGAAAATGAAAGGAGAGCAAGAATCTCATAG___CTTGTCAGCTCATTTGCAGCTTACATTTTTGGTTTCTTCCACAAAAATGGTATGTACTTAAAAGTAAAT YTDTGMIYFIDHNTKTTTWLDPRLCKKAKAPEDCEDG|gkhlklmicyqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3173 ANP32E::IL24 ENSG00000143401.15::ENSG00000162892.16 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 540 TRUE 186 ANP32E ENSG00000143401.15 protein_coding - - chr1:150218417-150236156:- chr1:150226608:- chr1:150190717-150208504:- chr1:150198940:- IL24 ENSG00000162892.16 protein_coding + + chr1:206897443-206904139:+ chr1:206899317:+ chr1:207070788-207077484:+ chr1:207072662:+ chr1:150223482,chr1:150223485 chr1:206899088,chr1:206899085 NA NA chr1:150195808,chr1:150195811 chr1:207072433,chr1:207072430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Leucine-rich_repeat(100%),Leucine_Rich_repeats_(2_copies)(100%)| LRR_4(100%),LRR_6(100%),LRR_8(100%),LRR_9(100%)| 0 1 0 359 21 ENST00000629042.2 ENST00000367093.3 upstream upstream none GAGAAGAGGAAGTGGGCCTCTCATACTTAATGAAAGAAGAAATTCAG|CAGACCCTTCTGCCCTCCTTTGCTGGCGACAGCCTCTCAAATGCAGATGGTTGTGCTCCCTTGCC EEEVGLSYLMKEEIQ|qtllpsfagdslsnadgcapl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3174 ANP32E::IL24 ENSG00000143401.15::ENSG00000162892.16 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 540 TRUE 186 ANP32E ENSG00000143401.15 protein_coding - - chr1:150218417-150236156:- chr1:150226608:- chr1:150190717-150208504:- chr1:150198940:- IL24 ENSG00000162892.16 protein_coding + + chr1:206897443-206904139:+ chr1:206899320:+ chr1:207070788-207077484:+ chr1:207072665:+ chr1:150223482,chr1:150223485 chr1:206899088,chr1:206899085 NA NA chr1:150195808,chr1:150195811 chr1:207072433,chr1:207072430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Leucine-rich_repeat(100%),Leucine_Rich_repeats_(2_copies)(100%)| LRR_4(100%),LRR_6(100%),LRR_8(100%),LRR_9(100%)| 0 1 0 359 21 ENST00000629042.2 ENST00000294984.7 upstream upstream duplicates(3) CTCATACTTAATGAAAGAAGAAATTCAG|ACCCTTCTGCCCTCCTTTGCTGGCGACAGCCTCTCAAATGCAGATGGTTGTGCTCCCTTGCCTGGGTTTTACCCTGCTTCTCT SYLMKEEIQ|tllpsfagdslsnadgcaplpgfypas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3177 CUL5::ENSG00000286046 ENSG00000166266.14::ENSG00000286046.1 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 541 TRUE 187 CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108033911:+ chr11:107879624-107978488:+ chr11:107904637:+ ENSG00000286046 ENSG00000286046.1 lncRNA + + chr4:18418662-18888662:+ chr4:18877617:+ chr4:18420285-18890285:+ chr4:18879240:+ chr11:108044501,chr11:108044500 chr4:18872244,chr4:18872240 NA NA chr11:107915228,chr11:107915227 chr4:18873867,chr4:18873863 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cullin_family(4%)| Cullin(0%)| 13 23 22 127 47 ENST00000393094.7 ENST00000652661.1 downstream upstream duplicates(2),low_entropy(2),mismappers(1),mismatches(2) TCTCGCGAGAGTCCAAGTTAAAGAACATGGCGACGTCTAATCTGTTAAAG___AATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTTATGCGCCCGATTGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTTTTC|TTCTGGAGACTTTAAGACCAAGATCAAGATGCTGGCAAGG...___GACTTTTCTTCATCATGTGAAGAAGCCAACACAGACATCAACTCTTGCAGAAATATTTACATTCCAGGATGGGTGGAATATTCATCCTCTAAGACACTCTCCTTACTGCTCATTTCACTTCTG MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFs|sgdfktkikmla NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3178 CUL5::ENSG00000286046 ENSG00000166266.14::ENSG00000286046.1 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 541 TRUE 187 CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108033911:+ chr11:107879624-107978488:+ chr11:107904637:+ ENSG00000286046 ENSG00000286046.1 lncRNA + + chr4:18418662-18888662:+ chr4:18888378:+ chr4:18420285-18890285:+ chr4:18890001:+ chr11:108044501,chr11:108044500 chr4:18872244,chr4:18872240 NA NA chr11:107915228,chr11:107915227 chr4:18873867,chr4:18873863 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cullin_family(4%)| Cullin(0%)| 3 0 17 127 54 ENST00000393094.7 ENST00000652661.1 downstream upstream none TGTTAAAG___AATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTTATGCGCCCGATTGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTTTTC|GACTTTTCTTCATCATGTGAAGAAGCCAACACAGACATCAACTCTTGCAGAAATATTTACATTCCAGGATGGGTGGAATATTCATCCTCTAAGACACTCTCCTTACTGCTCATTTCACTTCTGGGTACAGTAAATATCATTATTTTTTGGTTTTTTAATATATCTGTCTCATAATATTGTTCATTCTTAAAGGATAACAACCATATCTTGTCCATCT LKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFs|tflhhvkkptqtstlaeiftfqdgwnihplrhspycsfhfwvq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3179 TMTC2::ENSG00000257703 ENSG00000179104.9::ENSG00000257703.6 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMTC2 ENSG00000179104.9 protein_coding + + chr12:82686880-83134870:+ chr12:82687669:+ chr12:83080659-83528649:+ chr12:83081448:+ ENSG00000257703 ENSG00000257703.6 lncRNA - - chr12:103079634-103178675:- chr12:103081537:- chr12:103473412-103572453:- chr12:103475315:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 3 8 3 99 14 ENST00000321196.8 ENST00000548594.6 downstream downstream none AAAGTGAAGCTGGGAGGAGAAGGCGGCGGAAGGTGGAGATTGATGCTTCTGTTTTTTGTTGCCGCTGCTGCCCTCGCGCTGGGAGCCGAGCCGGAGGGAAGGCGGTGGAGAGATGATTGCAGAGTTGGTGAGCAGCGCTCTGGGGCTCGCCTTGTATCTCAACACCCTGAGTGCGGATTTCTGCTATGATGACAG|GAAACTACAAGAAGATGCATCTGTCTTAACAAAAAATAATAAACCAAGAAAATAAAAGATATGGGATCCTAGAAATAAAAGGTGCAACACAAGAGAGAGATAAAGAAAAACATTGACAGCCTCTCTATGAAGAAAGACCCAAAGTAACAACTTTGCAACAGCTCTAGGGAATAATTTGTTCAGATAAGAGTAACTCAGGAGACTCCAAGAGCGATTTTCGAGAAGATTAAATCTATAGAATACCTAATATGTTTGCACTTGTAAAGAAGAGaTTTATACTACTTGGAGAGAATT MIAELVSSALGLALYLNTLSADFCYDDr|klqedasvltknnkprk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3182 ATG2A::DLG2 ENSG00000110046.14::ENSG00000150672.19 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATG2A ENSG00000110046.14 protein_coding - - chr11:64894546-64917209:- chr11:64896623:- chr11:64662018-64684681:- chr11:64664095:- DLG2 ENSG00000150672.19 protein_coding - + chr11:83455012-85628335:- chr11:84078556:+ chr11:83166055-85339379:- chr11:83789599:+ NA NA NA NA NA NA NA NA sense antisense stop-codon intron intron inversion/5'-5' medium none N-terminal_region_of_Chorein_or_VPS13(100%)| Chorein_N(100%)| 2 5 6 14 11 ENST00000377264.8 unknown upstream upstream mismatches(3) ACCAGGTG___GGCACTTTTGCTGGCCTCCTCATCGGCCTGGCCCAACTCAACTGCTCCGAGCTGAAGCTAAAGCGGCTCTGTTGCAGGCACGG___GCTCCTGGGTGTGGACAAGGTGCTGGGCTATGCCCTCAACGAGTGGCTGCAGGACATCCGCAAGAACCAGCTGCCCGGCCTGCTGGGAGGCGTGGGCCCCATGCACTCGGTTGTCCAGCTCTGTGAGTGTCTAGGTTTGGAAGCCCTCGAAACTGCTTTTACCCTTGGGCAACCTAGAAGCTGCCATTGGGAATAAGAGGAGGAGGTGGGGGCAGGGCAGCCTCGGGTGTCTCTGAGCGCTCCTTCC|ACCAATTAAATGGAAAAGTGAAAAAGAAGAACCATCATAAAGCTGCAGGCTTCTTCTTGGGCAGGTCAATTGAAGATCTGGATATTAAGTGACATAAATCCACCTATGTACTCCTAGAGGTACACCTTACTCAATTTAGAAAGCTCTGCTCTAACCTACATTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6750,hsa-mir-6749 chr11:64898363-64898437:-,chr11:64902387-64902455:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3201 EFTUD2::PLCD3 ENSG00000108883.13::ENSG00000161714.12 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 279 FALSE NA FALSE NA EFTUD2 ENSG00000108883.13 protein_coding - - chr17:44849948-44899445:- chr17:44863655:- chr17:42927316-42976813:- chr17:42941023:- PLCD3 ENSG00000161714.12 protein_coding - - chr17:45108959-45133354:- chr17:45119043:- chr17:43186327-43210721:- chr17:43196410:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none 116_kDa_U5_small_nuclear_ribonucleoprotein_component_N-terminus(100%),Elongation_factor_Tu_GTP_binding_domain(100%)|C2_domain(100%),EF_hand(44%),Phosphatidylinositol-specific_phospholipase_C__X_domain(100%),Phosphatidylinositol-specific_phospholipase_C__Y_domain(100%) EFTUD2(100%),GTP_EFTU(100%)|C2(100%),EF-hand_10(4%),EF-hand_like(100%),PI-PLC-X(100%),PI-PLC-Y(100%) 13 4 9 638 173 ENST00000426333.7 ENST00000619929.5 upstream downstream mismatches(2),multimappers(1) CACGGACCCTAGACGAGCTTGGCATCCACCTGACGAAGGAGGAGCTGAAGCTGAACATCCGCCCCTTGCTCAGGCTGGTCTGCAAAAAGTTCTTTGGCGAGTTCACAG___GCTTTGTGGACATGTGTGTGCAGCATATCCCTTCTCCAAAGGTGGGCGCCAAGCCCAAGATTGAGCACACCTACACCGGTGGTGTGGACTCCGACCTCGGCGAGGCTATGAGTGACTGTGACCCTGAT|GAGTGTGACCACTCCAACAACGACCGTCTAGAGGGGGCTGAGATCGAGGAGTTCCTGCGGCGGCTGCTGAAGCGGCCGGAGCTGGAGGAGATCTTCCATCAGTACTCGGGCGAGGACCGCGTGCTGAGTGCCCCTGAGCTGCTGGAGTTCCTGGAGGACCAGGGCGAGGAGGGCGCCACACTGGCCCGCGCCCAGCAGCTCATTCAGACCTATGAGCTCAACGAGACAG___CCAAGCAGCATGAGCTGATGACACTGGATGGCTTCATGATGTACCTGTTGTCGCCGGAGGGGGCTGCCTTGGACAACACCCACACGTGTGTGTTCCAGG RTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPD|ECDHSNNDRLEGAEIEEFLRRLLKRPELEEIFHQYSGEDRVLSAPELLEFLEDQGEEGATLARAQQLIQTYELNETAKQHELMTLDGFMMYLLSPEGAALDNTHTCVFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6784 chr17:45114367-45114433:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3202 PRMT3::NAV2 ENSG00000185238.13::ENSG00000166833.23 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PRMT3 ENSG00000185238.13 protein_coding + + chr11:20387558-20509338:+ chr11:20408032:+ chr11:20409104-20530884:+ chr11:20429578:+ NAV2 ENSG00000166833.23 protein_coding + + chr11:19350724-20121601:+ chr11:20035959:+ chr11:19372271-20143147:+ chr11:20057505:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ribosomal_protein_L11_methyltransferase_(PrmA)(58%)| MTS(21%),Methyltransf_11(0%),Methyltransf_25(0%),Methyltransf_31(10%),Methyltransf_9(8%),PrmA(21%),zf-C2H2_2(100%)| 5 2 2 114 101 ENST00000331079.11 ENST00000360655.8 downstream upstream duplicates(1) CAGGATTTTGTGATGCACACAGATGTCAGAACCTGCTCGTCATCTACTAGTGTCATTGCGGACCTCCAGGAGGATGAGGATGGTGTTTATTTCAGCTCATACGGGCATTATGGGATACATGAAGAAATGCTAAAG___GACAAAATACGAACAGAAAGCTACCGAGATTTCATATACCAAAATCCACATATCTTCAAAGACAAG___GTAGTTTTGGATGTTGGGTGTGGAACTGGAATTCTCTCTATGTTTGCTGCTAAAGCTGGGGCGAAGAAGGTTCTTGGAGTTGATCAATCTGAAATACTTTACCAGGCAATGGATATTATAAG|CTGGGACGACAGCAGCTCCGTCAGCAGCGGCATCAGCGACACCATAGACAACCTCAGCACTGATGACATCAACACCAGCTCCTCCATCAGCTCTTATGCCAACACACCTGCCTCCTCTCGAAAAAACCTGGATGTGCAG___ACTGATGCTGAGAAGCACTCACAGGTGGAGAGGAATTC QDFVMHTDVRTCSSSTSVIADLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIs|WDDSSSVSSGISDTIDNLSTDDINTSSSISSYANTPASSRKNLDVQTDAEKHSQVERN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3203 USPL1::LINC00383 ENSG00000132952.12::ENSG00000235221.3 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 545 FALSE NA USPL1 ENSG00000132952.12 protein_coding + + chr13:30617693-30660770:+ chr13:30631474:+ chr13:31191830-31234907:+ chr13:31205611:+ LINC00383 ENSG00000235221.3 lncRNA + + chr13:69221866-69322190:+ chr13:69311335:+ chr13:69795998-69896322:+ chr13:69885467:+ chr13:30631929,chr13:30631930 chr13:69282078,chr13:69282076 NA NA chr13:31206066,chr13:31206067 chr13:69856210,chr13:69856208 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ubiquitin-specific_peptidase-like__SUMO_isopeptidase(23%)| Peptidase_C98(0%)| 2 1 5 61 10 ENST00000255304.9 ENST00000431686.1 downstream upstream none CTAAACTGGAAATGCCACTGGAGAGCAAATGTACATCATTTCCCCAGGCTTTATGTGTCCAGTGGAAAAATGCTTATGCTCTCTGTTGGTTAGACTGTATCCTGTCAGCTTTGGTGCACTCGGAAGAGTTAAAGAACACCGTGACTGGACTGTGCTCGAAGGAGGAATCTATATTCTGGCGGTTGCTTACAAAATATAATCAAGCAAATACACTTCTATATACCAGTCAATTGAGTGGTGTTAAAG|ATTCACAGTTTCTGAAAGGACCATGGACTAATTGGATCACAAGCAAACTGAAACATTACAGG___AAATAATGCTGCAAAGCCGGGCATAGTGACATGCACCTGGAGTCCCAG KLEMPLESKCTSFPQALCVQWKNAYALCWLDCILSALVHSEELKNTVTGLCSKEESIFWRLLTKYNQANTLLYTSQLSGVK|dsqflkgpwtnwitsklkhyrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3207 SOX9-AS1::LINC00511 ENSG00000234899.11::ENSG00000227036.10 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX9-AS1 ENSG00000234899.11 lncRNA - - chr17:72067099-72237203:- chr17:72141685:- chr17:70063240-70233344:- chr17:70137826:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72404816:- chr17:70286232-70636611:- chr17:70400957:- chr17:72124721,chr17:72124724 chr17:72408637,chr17:72408637 NA NA chr17:70120862,chr17:70120865 chr17:70404778,chr17:70404778 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 4 1 1 16 133 ENST00000414600.1 ENST00000701652.1 upstream downstream duplicates(1),mismatches(1),multimappers(1) GAAGCCAAGTGGGAAGATCCTTGCTGGTTTCTCCCTCTGAGGAAGAAGGAAAATGCCATGACTCCCACTATGGCCTCTCTTGGAACCATATTTTGAG|GATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGACCACCTCTTGAGAGGCAGGAGCTCTGGATTTGATCAAGAATTCTTTGCTGAGCATGGTGCCTCATGCCTATAATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3212 SCGB3A2::FBXO38-DT ENSG00000164265.9::ENSG00000247199.6 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCGB3A2 ENSG00000164265.9 protein_coding + - chr5:147870682-147882191:+ chr5:147877736:- chr5:147250245-147261754:+ chr5:147257299:- FBXO38-DT ENSG00000247199.6 lncRNA - - chr5:148088125-148383907:- chr5:148290995:- chr5:147467688-147763470:- chr5:147670558:- chr5:147875350,chr5:147875352 chr5:148295023,chr5:148295022 NA NA chr5:147254913,chr5:147254915 chr5:147674586,chr5:147674585 NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 0 1 2 6 11 unknown ENST00000665055.1 upstream downstream none CGACATGCAAGGAAGAGG|CTCCAGAGAGAGCCATCCTGATGGAACCTACTGACCAGGGGGACACAAAAGAAAAGAGGGAGGAGATGAAAGAAG___AGGAAACAAAAGGAGGGTGTTAGAGGAAAAAGAGGGAAACCCACTGACAGAGAGGAAGGCTGAAGAGATCCCACCGCTGACTTGGACTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3215 ENSG00000288605::LINC00511 ENSG00000288605.1::ENSG00000227036.10 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288605 ENSG00000288605.1 lncRNA - - chr17:72033772-72220948:- chr17:72181405:- chr17:70029913-70217089:- chr17:70177546:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72404816:- chr17:70286232-70636611:- chr17:70400957:- chr17:72124721,chr17:72124724 chr17:72408637,chr17:72408637 NA NA chr17:70120862,chr17:70120865 chr17:70404778,chr17:70404778 NA NA sense sense unknown intron exon/splice-site duplication high none none none 2 1 0 12 133 unknown ENST00000701652.1 upstream downstream duplicates(1) TGGCACTACAATGAAGTGCAGCCCAGGTGCCAAGGGCAGCAGGAGGAAAGGATCCATGAACAGGTTCGAGGGGCTGGTGTGAAGTCAGTGAAGGAGACATGGAATGAGGCGAGCCTGTCAAG|GATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3219 TMEM104::PITPNM2 ENSG00000109066.14::ENSG00000090975.14 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74796009:+ chr17:72772638-72835892:+ chr17:72792148:+ PITPNM2 ENSG00000090975.14 protein_coding - + chr12:122983480-123151090:- chr12:123137411:+ chr12:123468027-123635637:- chr12:123621958:+ NA NA NA NA NA NA NA NA sense antisense unknown intron intron translocation/5'-5' medium none Transmembrane_amino_acid_transporter_protein(34%)| Aa_trans(18%)| 7 8 9 19 27 unknown unknown downstream upstream duplicates(3),mismatches(1) CCTCAAAGTCAAGCGTGGTTTGGAGTAGGCACTCAGGTCATAGCCAGATTCAGGACCGTGACTGTTGTAAACTTAGCTCAGATTCTAGGGCCGACCTCAGCAGAGTTCTCCAAGAGTGACACGTCTCATTTTTTCCGAAACTTTCCATATTTTGACCTTACTCCTGGCCA|GCCCTACCAACCCTCATACTCATGACTGATGAATACCTGCTCTGTGCCTGACCAGGACAACAGCAGCTCATGAGTGTACTTGACAGCTCATAAAGCC?CCCTCCCAGCCAGTCTCTCTGAATCCACACAGCAGCCTTGAGGGACCACTGCTACTGTTACCAGGTGGGTATTGGAACCAAGGCACAGAAAGGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3223 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19741565:- chr13:20248892-20357159:- chr13:20315705:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19852190:- chr13:20397622-20437789:- chr13:20426330:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication medium none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) NOPS(100%),RRM_1(100%)|zf-FCS(100%) 2 1 1 1424 194 ENST00000471658.5 ENST00000337963.9 upstream downstream duplicates(1) CAGTCATTGTGGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA___GGAAAGAGAACAACCA...GCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGGCAAG___ATCTAATGAGGCGTCAAGAAGAACTCAGACGCTTGGAAGAACTCAGAAACCAAGAGTTGCAAAAACGGAAGCAAATACAACTAAG|GTTCATTGGCATGGAAAAATGTTCAGTGGGAGGATTAGAGTTGACTGAACAGACTCCTGCTTTATTAGGGAATATGGCCATGGCAACTAGTCTCATGGACATAGGGGATTCATTTGGTCATCCAGCTTGTCCTTTAGTCAGTAGATCTAGGAACTCACCAGTGGAAGA REQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLr|figMEKCSVGGLELTEQTPALLGNMAMATSLMDIGDSFGHPACPLVSRSRNSPVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3235 USP54::CFAP70 ENSG00000166348.20::ENSG00000156042.19 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA USP54 ENSG00000166348.20 protein_coding - - chr10:73497538-73626117:- chr10:73575512:- chr10:75257296-75385875:- chr10:75335270:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73299665:- chr10:75013520-75118622:- chr10:75059423:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ubiquitin_carboxyl-terminal_hydrolase(6%)|Tetratricopeptide_repeat(100%) UCH(0%)|Sel1(100%),TPR_16(100%),TPR_6(100%),TPR_8(100%) 1 2 1 81 30 ENST00000689425.1 ENST00000355577.9 upstream downstream none GGAGGATACCTGAGTCCCTTGACTACACAGATGATATTTGGAAG___GCTAAATGTGAACAATAATGTCTTGGAAGAGAAATTATTTTTCAGGGGGTCGTGGTA...AAGGGATGTTTGCACCTCGAAGCTCAACCTCCATAGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTTCCTCAACAGTGCCCTGCAG|GGTCAAGGAAATGATTCCTCCAAGGCCTCCTCTTACCCGTCGGACAGGAGGAGCTCAGAAG___GCAGTGAGTGACTACCACATACAGATCAAGAATATTTCTAGAGCCATTCTAGATGAATACTACAGAATGTTTGGAAAACAGGTGG GMFAPRSSTSIAPSKGLSNEPGQNSCFLNSALQ|gqgndsskassypsdrrssegse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3251 TMEM181::SYTL3 ENSG00000146433.10::ENSG00000164674.17 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 280 TRUE 554 TRUE 188 TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158573523:+ chr6:158957468-159056461:+ chr6:158994555:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158745480:+ chr6:159071046-159185908:+ chr6:159166512:+ chr6:158580598,chr6:158580599 chr6:158730795,chr6:158730793 NA NA chr6:159001630,chr6:159001631 chr6:159151827,chr6:159151825 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |C2_domain(100%) |C2(100%) 10 46 36 129 119 ENST00000684151.1 ENST00000367081.7 downstream upstream duplicates(24),low_entropy(1),mismatches(6) GCGCGGGCCGGGGCCGAGGGCTCTGGGCGCCGAGATGGAGCC___GCTGGCGCCCATGCGGCTCTACACGCTCTCCAAGCGCCACTTTGTCCTCGTGTTTGTCGTCTTCTTCATCTGCTTTGGCCTGACCATCTTCGTTGGGATCAGAG|GGAAGTTTAATTAGCATTGACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCCATTCATTATTGCTTCAAAACCCATTCTTTAGAAATATGCATCAAGGCCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAGAAAAAGTGCAATCC___GTATGTGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAACACCGTGGACCCGACCTTTCAGGAGACCTTGAAG___TATCAG MEPLAPMRLYTLSKRHFVLVFVVFFICFGLTIFVGIR|gkfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3252 TMEM181::SYTL3 ENSG00000146433.10::ENSG00000164674.17 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 554 TRUE 188 TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158573523:+ chr6:158957468-159056461:+ chr6:158994555:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158751928:+ chr6:159071046-159185908:+ chr6:159172960:+ chr6:158580598,chr6:158580599 chr6:158730795,chr6:158730793 NA NA chr6:159001630,chr6:159001631 chr6:159151827,chr6:159151825 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |C2_domain(88%) |C2(51%) 0 0 0 129 213 ENST00000367090.4 ENST00000367081.7 downstream upstream mismatches(1) TTGTCGTCTTCTTCATCTGCTTTGGCCTGACCATCTTCGTTGGGATCAGAG|GTATGTGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAGCGCA...GGgGcCCCtgcCCCAGCTGGTGACCCGGCAGCTGCAGGTCTCGGTGTGGCATCTGGG VVFFICFGLTIFVGIR|gm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3263 KIF20B::GBE1 ENSG00000138182.15::ENSG00000114480.13 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE TRUE 281 FALSE NA FALSE NA KIF20B ENSG00000138182.15 protein_coding + + chr10:89701590-89774939:+ chr10:89754673:+ chr10:91461347-91534696:+ chr10:91514430:+ GBE1 ENSG00000114480.13 protein_coding - - chr3:81489703-81761645:- chr3:81649921:- chr3:81538854-81810796:- chr3:81699072:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Kinesin_motor_domain(100%)|Alpha_amylase__C-terminal_all-beta_domain(100%),Alpha_amylase__catalytic_domain(100%),Carbohydrate-binding_module_48_(Isoamylase_N-terminal_domain)(20%) Kinesin(100%),Microtub_bd(100%)|Alpha-amylase(100%),Alpha-amylase_C(100%),CBM_48(0%) 16 9 17 127 77 ENST00000371728.8 ENST00000429644.7 downstream downstream duplicates(5),mismappers(1),mismatches(1),multimappers(1) ACAG___AATTGGAAAAATGGAAGGAAAAATGCAATGATTTGGAAACCAAAAACAATCAAAGGTCAAATAAAGAACATGAGAACAACACAGATGTGCTTGGAAAGCTCACTAATCTTCAAGATGAGTTACAG___GAGTCTGAACAGAAATATAATGCTGATAGAAAGAAATGGTTAGAAGAAAAAATGATGCTTATCACTCAAGCGAAAGAAGCAGAGAATATACGAAATAAAGAGATGAAAAAATATGCTGAGGACAGGGAGCGTTTTTTTAAGCAACAGAATGAAATG|GTAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCAGAACACTCATATGAG___TTTAAGCATTCCgGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTG___GATACAACTGCATTCAGTTGATGGCAATC TELEKWKEKCNDLETKNNQRSNKEHENNTDVLGKLTNLQDELQESEQKYNADRKKWLEEKMMLITQAKEAENIRNKEMKKYAEDRERFFKQQNEM|VVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSgPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3264 GBE1::KIF20B ENSG00000114480.13::ENSG00000138182.15 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 282 FALSE NA FALSE NA GBE1 ENSG00000114480.13 protein_coding - - chr3:81489703-81761645:- chr3:81670838:- chr3:81538854-81810796:- chr3:81719989:- KIF20B ENSG00000138182.15 protein_coding + + chr10:89701590-89774939:+ chr10:89758706:+ chr10:91461347-91534696:+ chr10:91518463:+ chr3:81665267,chr3:81665272 chr10:89754832,chr10:89754827 NA NA chr3:81714418,chr3:81714423 chr10:91514589,chr10:91514584 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Carbohydrate-binding_module_48_(Isoamylase_N-terminal_domain)(79%)| CBM_48(62%)| 9 3 5 81 89 ENST00000429644.7 ENST00000371728.8 upstream upstream mismatches(3) GCCGCCCTGGCTGACGTGCCCGAACTGGCCAGACTCCTGGAGATCGACCCGTACTTGAAGCCCTACGCCGTGGACTTCCAGCGCAG___GTATAAGCAGTTTAGCCAAATTTTGAAGAACATTGGAGAAAATGAAGGTGGTATTGATAAGTTTTCCAGAGGCTATGAATCATTTGGCGTCCACAGATGTGCTGATGGTGGTTTATACTGCAAAGAATGGGCCCCGGGAGCAGAAGGAGTTTTTCTTACTGGAGATTTTA___ATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAG|GAAATACTGACAGCCCAGCTGACAGAGAAAGATAGTGACCTTCAAAAGTGGCGAGAAGAACGAGATCAACTGGTTGCAGCTTTAGAAATACAGCTAAAAGCACTGATATCCAGTAATGTACAGAAAGATAATGAAATTGAACAACTAAAAAGGATCATATCAGAGACTTCTAAAATA___GAAACACAAATCATGGATATCAAGCCCAAACGTATTAGTTC AALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLK|EILTAQLTEKDSDLQKWREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQIMDIKPKRIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3265 ACOXL::BCL2L11 ENSG00000153093.21::ENSG00000153094.25 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 283 TRUE 558 TRUE 189 ACOXL ENSG00000153093.21 protein_coding + + chr2:110732539-111118548:+ chr2:110841405:+ chr2:111490116-111876125:+ chr2:111598982:+ BCL2L11 ENSG00000153094.25 protein_coding + + chr2:111119378-111168444:+ chr2:111150044:+ chr2:111876955-111926021:+ chr2:111907621:+ chr2:110844773,chr2:110844772 chr2:111132904,chr2:111132900 NA NA chr2:111602350,chr2:111602349 chr2:111890481,chr2:111890477 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Acyl-CoA_dehydrogenase__C-terminal_domain(22%),Acyl-CoA_dehydrogenase__middle_domain(100%)|Bcl-x_interacting__BH3_domain(100%) Acyl-CoA_dh_1(19%),Acyl-CoA_dh_M(100%)|Bclx_interact(100%) 13 7 12 205 202 ENST00000676595.2 ENST00000393256.8 downstream upstream duplicates(4),mismappers(1),mismatches(6) GAGTCACAGCTATTGATATGATGTACAAGGAGG___GTCTGCATGGTGTGGACAATGGGATATTAATATTTGACAAGGTTCGGATACCCAGGGAGAACCTGCTGGATAA___GTTTGGTTCCGTGGCTCCAGATGGACAGTACCATTCGCCTATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGGCAGCACTGACCCCTTCGAGATTAGCTGTGGCTTTCCAAGCTATGGGTGCCATGAAG___CTTGGGTTGACGATAGCCATTCGCTATAGCCACAG|CTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATcGGAGACGAGTTTAACGCTTACTATGCAAGGAGG___TTAGAGAAATAGAG...AGTGGGGAAGCGTTTGAG...___GTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACATTGTCC VTAIDMMYKEGLHGVDNGILIFDKVRIPRENLLDKFGSVAPDGQYHSPIRNKSARFNAMLAALTPSRLAVAFQAMGAMKLGLTIAIRYSHs|fheag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3266 ACOXL::BCL2L11 ENSG00000153093.21::ENSG00000153094.25 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 558 TRUE 189 ACOXL ENSG00000153093.21 protein_coding + + chr2:110732539-111118548:+ chr2:110841405:+ chr2:111490116-111876125:+ chr2:111598982:+ BCL2L11 ENSG00000153094.25 protein_coding + + chr2:111119378-111168444:+ chr2:111142313:+ chr2:111876955-111926021:+ chr2:111899890:+ chr2:110844773,chr2:110844772 chr2:111132904,chr2:111132900 NA NA chr2:111602350,chr2:111602349 chr2:111890481,chr2:111890477 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Acyl-CoA_dehydrogenase__C-terminal_domain(22%),Acyl-CoA_dehydrogenase__middle_domain(100%)|Bcl-x_interacting__BH3_domain(100%) Acyl-CoA_dh_1(19%),Acyl-CoA_dh_M(100%)|Bclx_interact(100%) 2 0 14 205 8 ENST00000676595.2 ENST00000438054.2 downstream upstream duplicates(3),mismatches(4) CATCGTTCCTGTCCGGGATGAAAACGGAAGCTTGTACCCAGGAGTCACAGCTATTGATATGATGTACAAGGAGG___GTCTGCATGGTGTGGACAATGGGATATTAATATTTGACAAGGTTCGGATACCCAGGG...ATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGGCAGCACTGACCCCTTCGAGATTAGCTGTGGCTTTCCAAGCTATGGGTGCCATGAAG___CTTGGGTTGACGATAGCCATTCGCTATAGCCACAG|ATGACTCCGCTGGATCCTCCCTCAGAATTGCCCTTCATAGGGAAGTTCAGTGGCCACTCAAG IRNKSARFNAMLAALTPSRLAVAFQAMGAMKLGLTIAIRYSHr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3267 ACOXL::BCL2L11 ENSG00000153093.21::ENSG00000153094.25 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 558 TRUE 189 ACOXL ENSG00000153093.21 protein_coding + + chr2:110732539-111118548:+ chr2:110841405:+ chr2:111490116-111876125:+ chr2:111598982:+ BCL2L11 ENSG00000153094.25 protein_coding + + chr2:111119378-111168444:+ chr2:111144488:+ chr2:111876955-111926021:+ chr2:111902065:+ chr2:110844773,chr2:110844772 chr2:111132904,chr2:111132900 NA NA chr2:111602350,chr2:111602349 chr2:111890481,chr2:111890477 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Acyl-CoA_dehydrogenase__C-terminal_domain(22%),Acyl-CoA_dehydrogenase__middle_domain(100%)|Bcl-x_interacting__BH3_domain(100%) Acyl-CoA_dh_1(19%),Acyl-CoA_dh_M(100%)|Bclx_interact(100%) 0 1 12 205 12 ENST00000676595.2 ENST00000433098.6 downstream upstream duplicates(1),mismatches(4) ATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGGCAGCACTGACCCCTTCGAGATTAGCTGTGGCTTTCCAAGCTATGGGTGCCATGAAG___CTTGGGTTGACGATAGCCATTCGCTATAGCCACAG|CTAACTGGGACTAGAAACAGCTCCATCACCCAG___CTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATG...GGAAGCGTTTGAGACGGAGCTGTGGAGGCTGAATCCTTGAAGGAGGAGGTGAGAGAGGCACAG___GTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCC IRNKSARFNAMLAALTPSRLAVAFQAMGAMKLGLTIAIRYSHs|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3268 ACOXL::BCL2L11 ENSG00000153093.21::ENSG00000153094.25 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 558 TRUE 189 ACOXL ENSG00000153093.21 protein_coding + + chr2:110732539-111118548:+ chr2:110805395:+ chr2:111490116-111876125:+ chr2:111562972:+ BCL2L11 ENSG00000153094.25 protein_coding + + chr2:111119378-111168444:+ chr2:111150044:+ chr2:111876955-111926021:+ chr2:111907621:+ chr2:110844773,chr2:110844772 chr2:111132904,chr2:111132900 NA NA chr2:111602350,chr2:111602349 chr2:111890481,chr2:111890477 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Acyl-CoA_dehydrogenase__C-terminal_domain(14%),Acyl-CoA_dehydrogenase__middle_domain(100%)|Bcl-x_interacting__BH3_domain(100%) Acyl-CoA_dh_1(0%),Acyl-CoA_dh_M(100%)|Bclx_interact(100%) 0 1 5 195 202 ENST00000676595.2 ENST00000433098.6 downstream upstream mismatches(3) GTCTGCATGGTGTGGACAATGGGATATTAATATTTGACAAGGTTCGGATACCCAGGGAGAACCTGCTGGATAA___GTTTGGTTCCGTGGCTCCAGATGGACAGTACCATTCGCCTATTAGGAACAAGAGTGCAAGATTCAATGCCATGCTGGCAGCACTGACCCCTTCGAGATTAGCTGTGGCTTTCCAAGCTATGGGTGCCATGAAG|CTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATcGGAGACGAGTTTAACGCTTACTATGCAAGGAGG___TTAGAGAAATAGAGGAAGTTG...CAGGTGACGTTTCAGAAGACACCGAGCTGGATGGGACTACCTTTCTGTTCATCACCACACAGCAGAATTTCTAATGGAAGTTTGTTGTGAATGTAAAGGAG LHGVDNGILIFDKVRIPRENLLDKFGSVAPDGQYHSPIRNKSARFNAMLAALTPSRLAVAFQAMGAMK|lp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3269 PAWR::ENSG00000243024 ENSG00000177425.11::ENSG00000243024.7 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 559 TRUE 190 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ENSG00000243024 ENSG00000243024.7 transcribed_processed_pseudogene + + chr12:64222333-64397260:+ chr12:64349018:+ chr12:64616113-64791040:+ chr12:64742798:+ chr12:79677096,chr12:79677098 chr12:64338561,chr12:64338559 NA NA chr12:80070876,chr12:80070878 chr12:64732341,chr12:64732339 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none none none 3 13 6 270 22 ENST00000328827.9 unknown upstream upstream duplicates(1),mismappers(2),mismatches(2) CGAGCCCCCAGCCGCCTCTGCCTCGGCTGCACCGCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|AGTCTCACTCTGCTGCACAGCCTGGAGTGCAATGGTGTGATCTCAGCTGACTGCAACCTCTGCCTCCCAGGTTCAAATGATTCTCCTGCCTTCACAATCTATACATCTGACAAAGGACTAATATCCAGAATCTACTACGAACTCAAATGAATTAGCAAGAATAAAACAATCCTATCAAAAAGTGGGcTAAGGATATGAATAAACAATTCTCAAAAGAAGATACACAAATGGCCAACAAACATATGAAAAAATGCTCAAGATCACTAATGATCAAGGGAAAGCAAAACAAAACCACAATGCAATACCACTTTACTTCTGCAAGAATGGCCA EPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|sltllhslecngvisadcnlclpgsndspaftiytsdkglisriyyelk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3270 PAWR::ENSG00000243024 ENSG00000177425.11::ENSG00000243024.7 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 559 TRUE 190 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ENSG00000243024 ENSG00000243024.7 transcribed_processed_pseudogene + + chr12:64222333-64397260:+ chr12:64389033:+ chr12:64616113-64791040:+ chr12:64782813:+ chr12:79677096,chr12:79677098 chr12:64338561,chr12:64338559 NA NA chr12:80070876,chr12:80070878 chr12:64732341,chr12:64732339 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 4 1 270 20 ENST00000328827.9 ENST00000535684.6 upstream upstream duplicates(1) CGCCTCTGCCTCGGCTGCACCGCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCA...GGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|ACTCGTTCAAAACAAGCCATGACTCCTCAGCAAAACAGCTCCATCAAGCGTCTCGCCAACCTCTCCCTTGGGGCTCAGTCAAGGGAATGAAAAAACGAGGCTAGACACCTGTCCCCAACGGAAAAACCAAGAACACACCTGGAGAGCAGCTCAGACAAAGGGAGCCAGGCGGGGAAAACAGTAATTGGAGAGGAGACCGTGCTTCCAGTCTGTTGCTGGTTTACAAGGTAAATCTATTCCTGGACGAAAGGGGTACAGGAACAGCACCCGAAAACCGGCGACAGGCTGTGGCAG QIEKRKLREKRRSTGVVNIPAAE|trskqamtpqqnssikrlanlslgaqsre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3271 PAWR::C12orf56 ENSG00000177425.11::ENSG00000185306.13 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- C12orf56 ENSG00000185306.13 protein_coding - + chr12:64264762-64390758:- chr12:64349018:+ chr12:64658542-64784538:- chr12:64742798:+ chr12:79677096,chr12:79677098 chr12:64338561,chr12:64338559 NA NA chr12:80070876,chr12:80070878 chr12:64732341,chr12:64732339 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 3 13 5 270 22 ENST00000328827.9 unknown upstream upstream duplicates(1),mismappers(2),mismatches(2) CGAGCCCCCAGCCGCCTCTGCCTCGGCTGCACCGCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|AGTCTCACTCTGCTGCACAGCCTGGAGTGCAATGGTGTGATCTCAGCTGACTGCAACCTCTGCCTCCCAGGTTCAAATGATTCTCCTGCCTTCACAATCTATACATCTGACAAAGGACTAATATCCAGAATCTACTACGAACTCAAATGAATTAGCAAGAATAAAACAATCCTATCAAAAAGTGGGcTAAGGATATGAATAAACAATTCTCAAAAGAAGATACACAAATGGCCAACAAACATATGAAAAAATGCTCAAGATCACTAATGATCAAGGGAAAGCAAAACAAAACCACAATGCAATACCACTTTACTTCTGCAAGAATGGCCA EPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|sltllhslecngvisadcnlclpgsndspaftiytsdkglisriyyelk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3272 ZNF557::MBD3L3 ENSG00000130544.12::ENSG00000182315.10 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF557 ENSG00000130544.12 protein_coding + + chr19:7069703-7087968:+ chr19:7081455:+ chr19:7069714-7087979:+ chr19:7081466:+ MBD3L3 ENSG00000182315.10 protein_coding - - chr19:7056207-7069665:- chr19:7060970:- chr19:7056218-7069676:- chr19:7060981:- chr19:7086973 chr19:7065378 NA NA chr19:7086984 chr19:7065389 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none KRAB_box(100%)|C-terminal_domain_of_methyl-CpG_binding_protein_2_and_3(100%),p55-binding_region_of_Methyl-CpG-binding_domain_proteins_MBD(100%) KRAB(100%)|MBD_C(100%),MBDa(100%) 3 1 15 81 24 ENST00000414706.2 unknown downstream downstream duplicates(9),mismatches(3) TCGGAGTCACAGGATGGCGGCTGTCGTCCTGCCCCCAACTGCCG___CCTCTCAGCGAGAAGGACACACAGAGGGCGGAGA?CT...TTCACCCAGGAGGAGTGGGCATTGCTGGACCCTGCCCAAAGGACACTGTACAGGGACGTGATGCTGGAGAACTGCAGGAACCTGGCCTCACTGG___GGAACCAAGTTGATAAACCTAGGCTGATCTCCCAGCTGGAGCAAGAAGATAAAGTGATGACAGAAGAGAGAGGAATTCTCTCAGGTACCTGTCCAG|AGTTTCATTGTATCAAGAAGGCAGATTATCTCCTCATTGACTGTGAAGCTGTTCTTCTACCTAGTTTTTAATTAAAGCTATTTACTGTGTTTTATGCTTAGAACTGAAACTAAGAGTATAAGAAATTAGGCCAGGCACGGTGGCTCACGCCTGTAATCCTAGCACTTTGAGAGGCCAAGGCAGGTGAATCACTTGAGGTCAGTAGTTCGAGACCACCCTGGCCAACATGGTGAAACCCCGTCTCGACAAAAAATACAAAAATA FTQEEWALLDPAQRTLYRDVMLENCRNLASLGNQVDKPRLISQLEQEDKVMTEERGILSGTCP|efhcikkadyllidceavllpsf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3273 YIPF1::TUT4 ENSG00000058799.15::ENSG00000134744.14 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA YIPF1 ENSG00000058799.15 protein_coding - - chr1:53851719-53889798:- chr1:53860056:- chr1:54317392-54355471:- chr1:54325729:- TUT4 ENSG00000134744.14 protein_coding - - chr1:52408282-52553487:- chr1:52475535:- chr1:52873954-53019159:- chr1:52941207:- chr1:53855694,chr1:53855698 chr1:52476072,chr1:52476073 NA NA chr1:54321367,chr1:54321371 chr1:52941744,chr1:52941745 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site deletion high none Yip1_domain(100%)|Cid1_family_poly_A_polymerase(54%),TUTase_nucleotidyltransferase_domain(39%),Zinc_knuckle(100%) Yip1(100%)|NTP_transf_2(100%),PAP_assoc(20%),PRP38(100%),PRP38_assoc(100%),TUTase(79%),zf-CCHC(100%),zf-CCHC_4(100%) 6 3 8 205 333 ENST00000072644.7 ENST00000371544.7 upstream downstream duplicates(5) CTTTGCCATAGCAATTAGTGGGAATCTTTCCAACTTCTTGATCCATCTGGGAGAGAAGACGTACCATTATGTGCCCGAATTCCGAAAAG___...ATACTGTGGATTATCCCCCAGAAAGCTGTTCGTTGGATTCTAGTCATGATTGCCCTGGGCATCTCAGGATCTCTCTTGGCAATGACATTTTGGCCAGCTGTTCGTGAGGATAACCGACGCGTTGCATTGGCCACAATTGTGACAATTGTGTTGCTCCATATGCTGCTTTCTGTGGGCTGCTTG___GCATACTTTTTTGATGCACCAGAGATGGACCATCTCCCAACAACTACAGCTACTCCAAACCAAACAGTTGCTGCAGCCAAGTCCAGCTAATGAGGAAA|ATCCATTTTCAGTCAAGAGGAATGTTGCACGGAGCTTAAACAGCCAGCTGGTTTACGAATATGTTGTGGAGAGATTTAGGGCAGCTTATCGGTATTTTGCCTGTCCTCAGACGAAGGGTGGAAATAAGTCTACAGTGGATTTCAAGAAAAGAGAGAAGGGGAAAATAAGCAATAAGAAACCAGTCAAGTCGAACAATATGGCAACCAATGGTTGTATTCTGCTTGGGGAAACCACAGAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3274 CAND1::ACSS3 ENSG00000111530.13::ENSG00000111058.8 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 560 TRUE 191 CAND1 ENSG00000111530.13 protein_coding + + chr12:67269358-67319953:+ chr12:67295156:+ chr12:67663138-67713733:+ chr12:67688936:+ ACSS3 ENSG00000111058.8 protein_coding + + chr12:80936414-81261210:+ chr12:81022383:+ chr12:81330193-81654989:+ chr12:81416162:+ chr12:67297858,chr12:67297859 chr12:80987471,chr12:80987469 NA NA chr12:67691638,chr12:67691639 chr12:81381250,chr12:81381248 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |AMP-binding_enzyme(100%),AMP-binding_enzyme_C-terminal_domain(100%),Acetyl-coenzyme_A_synthetase_N-terminus(100%) HEAT(100%)|ACAS_N(100%),AMP-binding(100%),AMP-binding_C(100%) 4 3 9 671 11 ENST00000545606.6 ENST00000549175.1 downstream upstream duplicates(2) CGCCTCGTACCACATTTCCAATTTGCTGGAAAAAATGACATCCAGCGACAAGGACTTTAG___GTTTATGGCTACAAATGATTTGATGACGGAACTGCAGAAAGATTCCATCAAGTTGGATGATGATAGTGAAAGGAAAGTAGTGAAAA...AAAGAATACCAAGTAGAGACAATTGTAGATACCCTCTGCACTAACATGCTTTCTGATAAAGAACAACTTCGAGACATTTCAAGTATTGGTCTTAAAACAGTAATTGGAGAACTTCCTCCAGCTTCCAGTG___GCTCTGCATTAGCTGCTAATGTATGTAAAAAGATTACTGGACGTCTTACAAGTGCAATAGCAAAACAGGAAGATGTCTCTGTTCAGCTAGAAGCCTTGGATATTATGGCTGATATGTTGAGCAG|AGACAGAGACTGACTGTGATGCCCAGGCTTATCTCTAACTCGTGGCCTCAAGCAATCCTCTTGCCTCAGGCTCCCAAAG...CCGGATAAGCTGTAGACATGTTTTTAAAGGTGGATATGTGCCTGTAG___GTTTGTGGAAGGAATGCTTAACATTTGTTACAATGCCGTTGATCGTCATATTGAAAATGGTAAAGGGGATAAGATTGCTATCATCTATGACAGTCCTGTTACAAACACTAAAGCAACC KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSr|drd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4699 chr12:81158388-81158461:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3275 CAND1::ACSS3 ENSG00000111530.13::ENSG00000111058.8 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 560 TRUE 191 CAND1 ENSG00000111530.13 protein_coding + + chr12:67269358-67319953:+ chr12:67297663:+ chr12:67663138-67713733:+ chr12:67691443:+ ACSS3 ENSG00000111058.8 protein_coding + + chr12:80936414-81261210:+ chr12:81022383:+ chr12:81330193-81654989:+ chr12:81416162:+ chr12:67297858,chr12:67297859 chr12:80987471,chr12:80987469 NA NA chr12:67691638,chr12:67691639 chr12:81381250,chr12:81381248 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |AMP-binding_enzyme(100%),AMP-binding_enzyme_C-terminal_domain(100%),Acetyl-coenzyme_A_synthetase_N-terminus(100%) HEAT(100%)|ACAS_N(100%),AMP-binding(100%),AMP-binding_C(100%) 1 1 9 695 11 ENST00000545606.6 ENST00000549175.1 downstream upstream duplicates(1) TTCTGACCTGTCTACTTCCCCAGTTGACCAGCCCTAGACTTGCAGTGAGGAAAAGAACCATTATCGCTCTTGGCCATCTGGTTATGAGCTGTGGAAATATA...GATTCTATGTCAACAACAAGAACCTACATACAATGTATTGCTGCTATTAGTAGGCAAGCTGGTCATAGAATAG|AGACAGAGACTGACTGTGATGCCCAGGCTTATCTCTAACTCGTG...CCGGATAAGCTGTAGACATGTTTTTAAAGGTGGATATGTGCCTGTAG___GTTTGTGGAAGGAATGCTTAACATTTGTTACAATGCCGTTGATCGTCATATTGAAAATGGTAAAGGGGATAAGATTGCTATCATCTATGACAGTCCTGTTACAAACACTAAAGCAACCTTTACCTATAAAGAAGTTCTGGAGCAG___GTCTCCAAG DSMSTTRTYIQCIAAISRQAGHRI|etetdcdaqayl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4699 chr12:81158388-81158461:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3276 CAND1::ACSS3 ENSG00000111530.13::ENSG00000111058.8 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 560 TRUE 191 CAND1 ENSG00000111530.13 protein_coding + + chr12:67269358-67319953:+ chr12:67295156:+ chr12:67663138-67713733:+ chr12:67688936:+ ACSS3 ENSG00000111058.8 protein_coding + + chr12:80936414-81261210:+ chr12:81109560:+ chr12:81330193-81654989:+ chr12:81503339:+ chr12:67297858,chr12:67297859 chr12:80987471,chr12:80987469 NA NA chr12:67691638,chr12:67691639 chr12:81381250,chr12:81381248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |AMP-binding_enzyme(100%),AMP-binding_enzyme_C-terminal_domain(100%),Acetyl-coenzyme_A_synthetase_N-terminus(22%) HEAT(100%)|ACAS_N(0%),AMP-binding(100%),AMP-binding_C(100%) 3 0 5 671 11 ENST00000545606.6 ENST00000548058.6 downstream upstream duplicates(1) CAGAAAGATTCCATCAAGTTGGATGATGATAGTGAAAGGAAAGTAGTGAAAATGATTTTGAAGTTATTGGAAGATAAAAATGGAGAGGTACAGAATTTAGC...ACCCTCTGCACTAACATGCTTTCTGATAAAGAACAACTTCGAGACATTTCAAGTATTGGTCTTAAAACAGTAATTGGAGAACTTCCTCCAGCTTCCAGTG___GCTCTGCATTAGCTGCTAATGTATGTAAAAAGATTACTGGACGTCTTACAAGTGCAATAGCAAAACAGGAAGATGTCTCTGTTCAGCTAGAAGCCTTGGATATTATGGCTGATATGTTGAGCAG|GTTTGTGGAAGGAATGCTTAACATTTGTTACAATGCCGTTGATCGTCATATTGAAAATGGTAAAGGGGATAAGATTGCTATCATCTATGACAGTCCTGTTACAAACACTAAAGCAACCTTTACCTATAAAGAAGTTCTGGAGCAG___GTCTCCAAGCTGGCTGGTGTCTTGGTCAAGCATGGCATCAAGAAAGGTGACACTGTGGTTATCTACATGCCTATGATCCCACAGGCG TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSr|FVEGMLNICYNAVDRHIENGKGDKIAIIYDSPVTNTKATFTYKEVLEQVSKLAGVLVKHGIKKGDTVVIYMPMIPQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4699 chr12:81158388-81158461:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3283 BICD1::HMGCLL1 ENSG00000151746.15::ENSG00000146151.14 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BICD1 ENSG00000151746.15 protein_coding + + chr12:32106835-32383633:+ chr12:32216459:+ chr12:32259769-32536567:+ chr12:32369393:+ HMGCLL1 ENSG00000146151.14 protein_coding - + chr6:55434373-55579197:- chr6:55478277:+ chr6:55299171-55443995:- chr6:55343075:+ chr12:32293032,chr12:32293027 chr6:55475593,chr6:55475585 NA NA chr12:32445966,chr12:32445961 chr6:55340391,chr6:55340383 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Microtubule-associated_protein_Bicaudal-D(9%)| BicD(0%)| 2 6 2 104 14 ENST00000548411.6 unknown downstream upstream duplicates(2),low_entropy(1),mismatches(4) CGcCAGCCTCAAACAGGAGCTGGAGCAGCTCAAAGAG___GCATTTGGGCAGTCCTTCTCCATCCACCGGAAGGTTGCTGAAGATGGAGAGACTCGGGAGGAAACGCTTCTGCAGGAGTCAGCATCGAAGGAGGCTTACTATCTGGGGAAGATCTTGGAGATGCAGAACGAGCTGAAACAGAGCCGGGCTGTGGTCACTAATGTACAGGCAGAAAACGAGAGGCTCACCGCAGTCGTGCAGGATCTGAAGGAG|ATACTGTGAAATGGCTCATGAAGGAATTCAAAGTTCTACCGAAAATCAATAAAGGCTTTCGAACAGAATTTG___...TCTTTTGCATATGAGGAAATGCAATTATCCCAATATCGTATTCTGTAGATAATGGAAAAGTCAGTGAAAAAATTGAAGTACCCGTTAGGAGGACACTGGAGAATTTCAAGAAAATGAAGCA?AAAACCATAACACTTGGCCCCATGGAAAGTGAAAAGCTACCAGCCATATTCTCCGTCCTGTAATCTCTCAGTTTCATG aSLKQELEQLKEAFGQSFSIHRKVAEDGETREETLLQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKE|il* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3285 TBC1D15::OTOGL ENSG00000121749.16::ENSG00000165899.12 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D15 ENSG00000121749.16 protein_coding + + chr12:71839707-71927248:+ chr12:71897941:+ chr12:72233487-72321028:+ chr12:72291721:+ OTOGL ENSG00000165899.12 protein_coding + - chr12:80099537-80380880:+ chr12:80266559:- chr12:80493317-80774660:+ chr12:80660339:- chr12:71899642,chr12:71899642 chr12:80298761,chr12:80298782 NA NA chr12:72293422,chr12:72293422 chr12:80692541,chr12:80692562 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/3'-3' high none Rab-GTPase-TBC_domain(27%),Rab-binding_domain_(RBD)(100%)| PH_RBD(100%),RabGAP-TBC(5%)| 3 1 3 434 44 ENST00000550746.5 unknown downstream downstream duplicates(1) GGG___GGACTTAGTCATGCATTGAGAAAGCAAGCATGGAAATTTCTTCTGGGTTATTTTCCCTGGGACAGTACCAAGGAGGAAAGAACCCAATTACAAAAGCAAAAAAC___TGATGAATACTTCAGAATGAAACTGCAGTGGAAATCCATCAGCCAGGAACAAGAGAAAAGAAATTCGAGGTTAAGAGATTATAGAAGTCTTATCG|CCTTCAGCACAGTCATCACTGCACTGCTCCGGGGAAGAGAGAGAAATGCAGGAATGGAGGCAGAACGAGG...CACTTGAGAAAGATTGCCATGGCACATAGAAACATTTTATGCCTCCTTAGAGGTCTATGATAGAAAATGAAAGCTGGCCTGTTACAAGGCAAGGAATTGGGAGACCCTTAACTTGGA GGLSHALRKQAWKFLLGYFPWDSTKEERTQLQKQKTDEYFRMKLQWKSISQEQEKRNSRLRDYRSLI|afstvitallrgrernagmeaer NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3286 AK4::TUT4 ENSG00000162433.15::ENSG00000134744.14 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 561 TRUE 192 AK4 ENSG00000162433.15 protein_coding + + chr1:65147549-65232145:+ chr1:65148552:+ chr1:65613232-65697828:+ chr1:65614235:+ TUT4 ENSG00000134744.14 protein_coding - - chr1:52408282-52553487:- chr1:52477882:- chr1:52873954-53019159:- chr1:52943554:- chr1:65177581,chr1:65177582 chr1:52481603,chr1:52481602 NA NA chr1:65643264,chr1:65643265 chr1:52947275,chr1:52947274 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Adenylate_kinase(14%)|Cid1_family_poly_A_polymerase(100%),TUTase_nucleotidyltransferase_domain(39%),Zinc_knuckle(100%) AAA_17(0%),AAA_18(0%),ADK(0%),Cytidylate_kin(100%)|NTP_transf_2(100%),PAP_assoc(100%),PRP38(100%),PRP38_assoc(100%),TUTase(79%),zf-CCHC(100%),zf-CCHC_4(100%) 3 0 3 22 354 ENST00000545314.5 ENST00000371544.7 downstream downstream duplicates(2) TTCCCGGGGCTTCCTCCGGGGCCGCGGTCGGGGCTGCGCGTTTGACCGCCCCCCTCCTCGCGAAGGCAATGGCTTCCAAACTCCTGCGCGCGGTCATCCTCGGGCCGCCCGGCTCGGGCAAGGGCACCGTGTGCCAGAGGATCGCCCAGAACTTTGGTCTCCAGCATCTCTCCAGCGGCCACTTCTTGCGGGAGAACATCAAGGCCAGCACCG|TCTCCTTTAGCATTGGAAACACCAAATCGGGTATCCTTGGGACAGTTATGGTTAGAGCTGCTTAAATTCTACACACTGGATTTTGCTTTGGAGGAATATGTCATATGTGTACGGATACAAGATATTTTAACAAGAGAAAATAAAAACTGGCCTAAAAGGCGA MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST|vsfsigntksgilgtvmvraa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3287 AK4::TUT4 ENSG00000162433.15::ENSG00000134744.14 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 561 TRUE 192 AK4 ENSG00000162433.15 protein_coding + + chr1:65147549-65232145:+ chr1:65148552:+ chr1:65613232-65697828:+ chr1:65614235:+ TUT4 ENSG00000134744.14 protein_coding - - chr1:52408282-52553487:- chr1:52465173:- chr1:52873954-53019159:- chr1:52930845:- chr1:65177581,chr1:65177582 chr1:52481603,chr1:52481602 NA NA chr1:65643264,chr1:65643265 chr1:52947275,chr1:52947274 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Adenylate_kinase(14%)|Cid1_family_poly_A_polymerase(51%),TUTase_nucleotidyltransferase_domain(27%),Zinc_knuckle(100%) AAA_17(0%),AAA_18(0%),ADK(0%),Cytidylate_kin(100%)|NTP_transf_2(54%),PAP_assoc(19%),PRP38(100%),PRP38_assoc(100%),TUTase(57%),zf-CCHC(100%),zf-CCHC_4(63%) 0 1 0 22 410 ENST00000545314.5 ENST00000371544.7 downstream downstream none CCAGAACTTTGGTCTCCAGCATaTCTCCAGCGGCCACTTCTTGCGGGAGAACATCAAGGCCAGCACCG|AAAAGGCAAGGTTGTGCgTATTTGGCTCTTCTA...CTATAGTAAAATTTGAACACAGGCGAAGTGGGTTAGAAGGCGATATaAGTTTATATAATACGTTG___GCTCAACATAACACAAGAATGCTAGCTgCTTATGCA QNFGLQHiSSGHFLRENIKAST|eKARLCvFGSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3288 MAML2::MTMR2 ENSG00000184384.15::ENSG00000087053.20 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 562 TRUE 193 MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96341383:- chr11:95709762-96076359:- chr11:96074547:- MTMR2 ENSG00000087053.20 protein_coding - - chr11:95821766-95925315:- chr11:95888261:- chr11:95554930-95658479:- chr11:95621425:- chr11:96267175,chr11:96267179 chr11:95918136,chr11:95918137 NA NA chr11:96000339,chr11:96000343 chr11:95651300,chr11:95651301 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none MamL-1_domain(100%)|GRAM_domain(100%),Myotubularin-like_phosphatase_domain(100%) MamL-1(100%)|Cep57_CLD(100%),Cep57_MT_bd(100%),GRAM(100%),Myotub-related(100%) 0 2 1 10 47 ENST00000524717.6 ENST00000675022.1 upstream downstream duplicates(3) CGCCACTGCTGCCACCACTACAGCCCCTCCACCGCCCCCTGCTGCCCCTCCTGCGGCCTCCCAAGCAGCAGCAACAGCAGCCCCACCGCCCCCACCAGACT...CGGAGAGCAGCAGCCGCCCGCTTCAACCCCAGGGGACCAGAGGAACTCAGCCCTGATTGCG|TGCCTCCACTTCTCATTCAGAGAATTCAGTGCATACAAAATCAGCTTCTGTTGTATCATCAGATTCCATTTCAACTTCTGCCGACAACTTTTCTCCTGATTTGAGG___GTCCTGAGGGAGTCTAACAAGTTAGCAGAAATGGAAGAACCACCCTTGCTTCCAGGAGAAAATATTAAAGACATGG___CCAAAGATGTAACTTAT...TTGTTTTAGATGCTTCCCTTGGTGTGATAAATAGAGTAGAAAAAATTGGTGGTGCTTCTAGTCGAGGTGAAAATTCTTATGGACTAGAAACTGTGTGTAAG GEQQPPASTPGDQRNSALIA|clhfsfrefsaykisfcciirfhfnfcrqlfs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3289 MAML2::MTMR2 ENSG00000184384.15::ENSG00000087053.20 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 562 TRUE 193 MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96341383:- chr11:95709762-96076359:- chr11:96074547:- MTMR2 ENSG00000087053.20 protein_coding - - chr11:95821766-95925315:- chr11:95914312:- chr11:95554930-95658479:- chr11:95647476:- chr11:96267175,chr11:96267179 chr11:95918136,chr11:95918137 NA NA chr11:96000339,chr11:96000343 chr11:95651300,chr11:95651301 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none MamL-1_domain(100%)|GRAM_domain(100%),Myotubularin-like_phosphatase_domain(100%) MamL-1(100%)|Cep57_CLD(100%),Cep57_MT_bd(100%),GRAM(100%),Myotub-related(100%) 0 1 1 10 27 ENST00000524717.6 ENST00000675848.1 upstream downstream duplicates(2),mismatches(1) CACCGCCACTGCTGCCACCACTACAGCCCCTCCACCGCCCCCTGCTGCCCCTCCTGCGGCCTCCCAAGCAGCAGCAACAGCAGCCCCACCGCCCCCACCAGACT...CAACCCCAGGGGACCAGAGGAACTCAGCCCTGATTGCG|TTAATGTGTTAAGAGCCATTGACATTTGAAGATCATCAGAAGTGAAGATAAAACATCTCAAAAATTATAAT___TGCCTCCACTTCTCATTCAGAGAATTCAGTGCATACAAAATCAGCTTCTGTTGTATCATCAGATTCCATTTCAACTTCTG TPGDQRNSALIA|lmc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3291 CASKIN2::TMEM94 ENSG00000177303.10::ENSG00000177728.17 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASKIN2 ENSG00000177303.10 protein_coding - - chr17:75500261-75515537:- chr17:75513711:- chr17:73496342-73511618:- chr17:73509792:- TMEM94 ENSG00000177728.17 protein_coding + - chr17:75441159-75500452:+ chr17:75458325:- chr17:73437240-73496533:+ chr17:73454406:- chr17:75508635,chr17:75508635,chr17:75508635 chr17:75465262,chr17:75465290,chr17:75465271 NA NA chr17:73504716,chr17:73504716,chr17:73504716 chr17:73461343,chr17:73461371,chr17:73461352 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Ankyrin_repeats_(3_copies)(7%)| Ank_2(0%)| 2 7 1 24 22 ENST00000321617.8 unknown upstream downstream duplicates(2) CAGGGACCGAGCAGGGCCAGCCGGACCCCGGCGGGCGGCCGGGAGAG___AGCCCTGAGACCAGTGCACCGCTGCTGCCTGAGGCCCAAGGGAATGCTGGCTGC...TTTCCATGTAGCCTTCACCCCCTCAAAGATTAGCTTTCCTTCGTGTGGTGGCAGTTCACGGAGCACCTTTGGGAGTATCCCTCAGTACCTGACGAGGAGCC...CCGTTGCCTGCCTTTGCCCTGGACTCCTGAGTGTAGAGCTCAGCCCAGGAGCCAGTATGGGTCGTGAACAGGACCTGATCCTCGCCGTCAAGAATGGAGATGTGACCGGTGTGCAGAAACTGGTGGCGAAGGTCAAGGCCACAAAGACAA|AATACCAAGATCAGCTCTTCTTTTGCCAAAAGTACTATAAAGAGATACCACAGTGCCATTTCTTCTCTCTTCAATGGCTCTCAATCTTTTTCTGCCTCCACGCTGTTCCTG...CGTTCCTGTTAATAACATCTCTAATGACACTGTAATGGTTCCCAAAAACCAAGGAAGAGGCATACCTTCCTCTTACTCTGCCTCTCGCTGCCCTGAGAATCACTAAAATAATTTACGCCCCCAATACAGACAGAGACTACAATGAATATTAATACAAGAAGTCTGC MGREQDLILAVKNGDVTGVQKLVAKVKATKT|kyqdqlffcqkyykeipqchffslqwlsiffclhavp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3293 NCK2::ADGRL3 ENSG00000071051.14::ENSG00000150471.17 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCK2 ENSG00000071051.14 protein_coding + + chr2:105744912-105894274:+ chr2:105745138:+ chr2:106361369-106510730:+ chr2:106361595:+ ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61676826:+ chr4:62066044-62944053:+ chr4:62542544:+ chr2:105811603,chr2:105811598 chr4:61630475,chr4:61630467 NA NA chr2:106428060,chr2:106428055 chr4:62496193,chr4:62496185 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |7_transmembrane_receptor_(Secretin_family)(100%),GPCR-Autoproteolysis_INducing_(GAIN)_domain(100%),GPCR_proteolysis_site__GPS__motif_(100%),Galactose_binding_lectin_domain(41%),Latrophilin_Cytoplasmic_C-terminal_region(100%),Olfactomedin-like_domain(100%) |7tm_2(100%),GAIN(100%),GPS(100%),Gal_Lectin(0%),Latrophilin(100%),OLF(100%) 0 4 0 6 14 ENST00000233154.9 ENST00000683033.1 downstream upstream none CGGCCACCGCCCCGGGACCCGCGCCGCTGCCCTCCGGCTCCGCGGGCGGCCCACGGCGAG|ATGCAATAACAGAACCCAGTGTGCAGTGGTGGCAGGTCCTGATGTTTTTCCAGACCCGTGTCCAGGAACCTATAAATACCTTGAAGTGCAGTATGAATGTGTCCCTTACA___TTTTTCTTTGTCCTGGACTACTAAAAGGAGTATACCAGAGTGAACATTTGTTTGAGTCCGACCACCAATC...TCTGCAGGCATCTGACAAGATTTATTATATGCCCTGGACTCCCTACAGAACTGATACCCTGACTGAGTATTCATCCAAGGATGACTTCATTGCTGGAAGACCAACTACAACCTACAAGCTCCCTCAtAGGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3296 MZF1::TFPI ENSG00000099326.9::ENSG00000003436.16 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 563 FALSE NA MZF1 ENSG00000099326.9 protein_coding - - chr19:58561931-58573575:- chr19:58569330:- chr19:59073298-59084942:- chr19:59080697:- TFPI ENSG00000003436.16 protein_coding - - chr2:187464230-187565760:- chr2:187560657:- chr2:188328957-188430487:- chr2:188425384:- chr19:58562819,chr19:58562819 chr2:187561602,chr2:187561623 NA NA chr19:59074186,chr19:59074186 chr2:188426329,chr2:188426350 NA NA sense sense unknown CDS intron translocation low none SCAN_domain(100%)|Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%) SCAN(100%)|Kunitz_BPTI(100%) 0 0 4 98 4 ENST00000599369.5 unknown upstream downstream duplicates(1) CTGGAGTCTGGGCCTCTAGCTGCCACCCAGGAGTCTGTACCCACCCTCCTGCCTGAGGAGGCCCAG___AGATGTGGGACCGTGCTGGACCAGATCTTTCCCCACAGCAAGACTGGGCCTGAGGGTCCCTCATGGAG...|...AAGTCGCAAGTACTCTCCCCCACTaCCCTTAAACTCACTCGTATTTCTGAAGAACAGTAATAACCCTTATGAGCCTAATATATCCCTTCATTCTATTCGATCTGTTCGTCCTTACCCTACTTTTTGCAACAGGGCTTTACGAAGTCACCCCCACCACTTAGGCCGAGCCCCAAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3306 PPM1H::USP15 ENSG00000111110.12::ENSG00000135655.16 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPM1H ENSG00000111110.12 protein_coding - - chr12:62643994-62935150:- chr12:62788226:- chr12:63037774-63328930:- chr12:63182006:- USP15 ENSG00000135655.16 protein_coding + - chr12:62260338-62417431:+ chr12:62399276:- chr12:62654119-62811211:+ chr12:62793056:- chr12:62743500,chr12:62743503 chr12:62407201,chr12:62407201 NA NA chr12:63137280,chr12:63137283 chr12:62800981,chr12:62800981 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Protein_phosphatase_2C(32%)| PP2C(13%)| 3 1 1 117 17 ENST00000228705.7 unknown upstream downstream duplicates(1),mismatches(1) TGAGAACACGCCCGCCAACAGCCGGACTCTGACCCGGGCAGCCTCCCTGCGCGGAGGGGTGGGGGCCCCGGGCTCCCCCAGCACGCCCCCCACACGCTTCTTTACCGAGAAGAAGATTCCCCATGAGTGCCTGGTCATCGGAGCGCTTGAAAGTGCATTCAAGGAAATG___GACCTACAGATAGAAaGAGAGAGGAGTTCATATAATATATCTGGTGGCTGCACGGCCCTCATTGTGATTTGCCTTTTGGGGAAGCTGTATGTTGCAAATGCTGGGGATAGCAG|CTACACAGGACCTCTGCTAAGCTGTTGCTGTGCATGCTGTATTGTTTCTTGACCTGTATCCTTTCTTAAATCTAAGTAAACCTGGTGCTGGGTGAATGCTTTTGCGTGCTGTGAGTTTGTTGATCTCAACCC...ATATAgtgATATCTCACTAAGGAAATTATCATcAGTCAAATAtCTTACAAAACAAAaCATACATGTACCTCTGAGATATTAATGTTTTGGCAAACATTTG...TAAAATGTATTTGTAACCCCAAAATCAATTCATGGTCATTTGTAGATATTTTCAGAGTGGCAAAAAATTTGAGTCACCTGATATGCATGTTACCAGCTGGG ENTPANSRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQIERERSSYNISGGCTALIVICLLGKLYVANAGDSs|ytgpllscccaccivs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3318 BCAS4::DOK5 ENSG00000124243.19::ENSG00000101134.12 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ DOK5 ENSG00000101134.12 protein_coding + - chr20:54475593-54651169:+ chr20:54627877:- chr20:53092132-53267708:+ chr20:53244416:- chr20:50806746,chr20:50806745 chr20:54632835,chr20:54632836 NA NA chr20:49423283,chr20:49423282 chr20:53249374,chr20:53249375 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 18 39 70 443 113 ENST00000358791.9 unknown downstream downstream duplicates(12),mismatches(5) GCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAGCCTGGGGCCGAG|GACTAAGGGGCCAGATCCTGAAATTCACTCCAGAGCATCGGTTCTGAAAGCATGTTACCTGGTCTAGCGACCTCAGCATCGCCTGAGTACTTATCAGAAATGTGCATTTCAATGCCCTGCCCCAGGCCTGTTAAAACACTCAAGTGGAACCCCGAAATCTGTGGCTTTACAAGCTTTGTAGGTGACTGTGATGCACAC___GGACTCACTTCACAGTCAAAGAGTATTGTTTTAATGGCAAAAAATCTGATATTCTTATACGTACGTTTAATAAATTATGTTACATCAAGACT RNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAE|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3319 MYH9::APOL1 ENSG00000100345.23::ENSG00000100342.22 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- APOL1 ENSG00000100342.22 protein_coding + - chr22:36253071-36267530:+ chr22:36258565:- chr22:36649117-36663576:+ chr22:36654611:- chr22:36349455,chr22:36349457 chr22:36258762,chr22:36258761 NA NA chr22:36745500,chr22:36745502 chr22:36654808,chr22:36654807 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' high none none none 48 9 25 1019 119 ENST00000685801.1 unknown upstream downstream duplicates(7),low_entropy(2),mismappers(1),mismatches(2) CAGATCACCGCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|CATCAAAAACCTGGGCAAGGCTAAGTTCCGGTCTCACCTGTATTCGGAGACCTCCCTAAACTCACACTGGCACCAACGTGACCAGGGATTTTCCAACAAG___ATTCTTGCTCTGTTGCCAGGCTGGAGTGCAGTGTTGTGATCTCGGCTCACTGCAACCTCCACCTCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3322 CWC27::ADAMTS6 ENSG00000153015.17::ENSG00000049192.15 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CWC27 ENSG00000153015.17 protein_coding + + chr5:64766368-65102412:+ chr5:64977238:+ chr5:64062195-64398239:+ chr5:64273065:+ ADAMTS6 ENSG00000049192.15 protein_coding - + chr5:65148738-65481920:- chr5:65391762:+ chr5:64444565-64777747:- chr5:64687589:+ chr5:64981388,chr5:64981385 chr5:65379282,chr5:65379276 NA NA chr5:64277215,chr5:64277212 chr5:64675109,chr5:64675103 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%)| Pro_isomerase(100%)| 8 6 26 230 59 ENST00000381070.8 unknown downstream upstream duplicates(5),low_entropy(1),mismappers(9),mismatches(10) AGCAAAACAAAAAAAAGTAGAAAATGCAGCAAAACAAGCAGAAAAAAGAAGTGAAG___AGGAAGAAGCCCCTCCAGATGGTGCTGTTGCCGAATACAGAAGAGAAAAGCAAAAGTATGAAGCTTTGAGGAAGCAACAGTCAAAGAAGGGAACTTCCCGGGAAGATCAG___ACCCTTGCACTGCTGAACCAGTTTAAATCTAAACTCACTCAAGCAATTGCTGAAACGCCTGAAAATGACATTCCTGAAACAGAAGTAGAAGATGATGAAGGATG|AGTCTTACTGTGTCACCCAGCTGGAATGCAGTAGCATGATCTTGGCTCACTGCAACATCTGCCTCCCGGATTCAAGCAATTCCCATGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGCACCCACCACCACACCAAGCTAATTTTTGTATTTTTAGCAGCGATGGGATTTTGCCACATTGGCCAGGCTGGTCTCAAACTCCTGATCTCAAGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGAGATTATAGGCATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3323 SMARCA4::C19orf44 ENSG00000127616.22::ENSG00000105072.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 286 TRUE 567 TRUE 194 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ C19orf44 ENSG00000105072.9 protein_coding + + chr19:16496394-16521352:+ chr19:16509499:+ chr19:16607205-16632163:+ chr19:16620310:+ chr19:11044947,chr19:11044944 chr19:16508865,chr19:16508859 NA NA chr19:11155623,chr19:11155620 chr19:16619676,chr19:16619670 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|Domain_of_unknown_function_(DUF4614)(100%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|DUF4614(100%),G-patch(100%) 5 8 16 43 56 ENST00000644737.1 ENST00000221671.8 downstream upstream duplicates(1),low_entropy(1),mismatches(3) GCTGGAGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAGCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|GAGGAAAGTGCTCAGAGACAAAAAACAGCTGGCAAAATCTTCAGAGCCGAGGCGTCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAGGAGCTGGGCATCACAGGGAAAGGCCGCCTCTGCAGAGGGGGATGAGAGCGAGGTCTCGGAGCATCTCAGTGCCAGCTCGGCTTCTGCCATCCAGCAGGACAGCACTTCCAGCATGCAGCCACCATCTGAAGCCCC LEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDr|rkvlrdkkqlaksseprrplgrmprgrprrgaghhrerpplqrgmrarsrsisvparllpssrtalpacshhlkp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 3324 SMARCA4::C19orf44 ENSG00000127616.22::ENSG00000105072.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 567 TRUE 194 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ C19orf44 ENSG00000105072.9 protein_coding + + chr19:16496394-16521352:+ chr19:16513014:+ chr19:16607205-16632163:+ chr19:16623825:+ chr19:11044947,chr19:11044944 chr19:16508865,chr19:16508859 NA NA chr19:11155623,chr19:11155620 chr19:16619676,chr19:16619670 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|Domain_of_unknown_function_(DUF4614)(53%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|DUF4614(56%),G-patch(100%) 2 1 4 43 61 ENST00000644737.1 ENST00000221671.8 downstream upstream mismatches(1) AGGAGATCGAAGAGGAGGTCCGGCAGAAGAAATCATCACGGAAGCGCAAGCGAGACAGCGACGCCGGCTCCTCCACCCCGACCACCAGCACCCGCAGCCGCGACAAGGACGACGAGAGCAAGAAGC...CGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|TGGCCAGCATGGCAGCCATGGGGCCTGCCCTGGGAGGCGCCTACGTGGACCCGACACCCATCGCCAATCATGTTATCAGTGCAGATGCAATAGAAG___CCCTGACCGCTTACAGCCCGGCCGTGCTGGCACTCCATGATGTGCTGAAGCAGCAGCTGAGCCTGACGCAGCAGTTCATCCAGGCCAGCCGGCACCTG RGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDs|gqhgshgacpgrrlrgpdthrqscyqcrcnrspdrlqpgragtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 3325 SMARCA4::C19orf44 ENSG00000127616.22::ENSG00000105072.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 567 TRUE 194 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ C19orf44 ENSG00000105072.9 protein_coding + + chr19:16496394-16521352:+ chr19:16514497:+ chr19:16607205-16632163:+ chr19:16625308:+ chr19:11044947,chr19:11044944 chr19:16508865,chr19:16508859 NA NA chr19:11155623,chr19:11155620 chr19:16619676,chr19:16619670 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|Domain_of_unknown_function_(DUF4614)(35%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|DUF4614(36%),G-patch(100%) 0 1 1 43 72 ENST00000644737.1 ENST00000221671.8 downstream upstream none CTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|CCCTGACCGCTTACAG...GATGCCCTGGAGGAGGTGAACAAGGAGCTGTGAGCGCCAGCAGGTGGAGCTTGACGTGACGTCTTAACAAAAG___CAAAGCACCGCAGCTTCCCAGAGTTACC AEKLSPNPPNLTKKMKKIVDAVIKYKDs|pdrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 3326 SMARCA4::C19orf44 ENSG00000127616.22::ENSG00000105072.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 567 TRUE 194 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ C19orf44 ENSG00000105072.9 protein_coding + + chr19:16496394-16521352:+ chr19:16517230:+ chr19:16607205-16632163:+ chr19:16628041:+ chr19:11044947,chr19:11044944 chr19:16508865,chr19:16508859 NA NA chr19:11155623,chr19:11155620 chr19:16619676,chr19:16619670 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|Domain_of_unknown_function_(DUF4614)(3%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|DUF4614(0%),G-patch(100%) 0 1 1 43 97 ENST00000644737.1 ENST00000221671.8 downstream upstream none GTGGATGCCGTGATCAAGTACAAGGACAG|TACATTAGGTGCCACAGACCTGCCCCACTGACCATGGAGGATGCCCTGGAGGAGGTGAACAAGGAGCTGTGAGCGCCAGCAGGTGGAGCTTGACGTGACGTCTTAACAAAAG___CAAAGCACCGCAGCTTCCCAGAGTTACCAGCGCAGCACTTAAGACAGGATCTTACGGCGGGGTGGGGCTCCTGGACCGTGAC VDAVIKYKDs|tlgatdlph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 3327 MRPL22::GEMIN5 ENSG00000082515.18::ENSG00000082516.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MRPL22 ENSG00000082515.18 protein_coding + + chr5:154941073-154969411:+ chr5:154941265:+ chr5:154320633-154348971:+ chr5:154320825:+ GEMIN5 ENSG00000082516.9 protein_coding - + chr5:154887411-154938211:- chr5:154937084:+ chr5:154266971-154317771:- chr5:154316644:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none none none 3 13 0 1469 210 ENST00000523037.6 unknown downstream upstream duplicates(1) GGCGAAAGATGGCGGCGGCAGTACTGGGACAGTTGG___GTGCGTTATGGATACATAACCTGAGGAGCCGGGGGAAGCTGGCCTTGGG|TCCCATCGTCGGAGCTGGTGGCACAGAGGTTGTACTGACCAGGGTGATGAGAAAATGTGAAGCCAGAGACCCTTTCGGTGTGTCCCACCAACTCTCCTATGACTTTAAGCAAAACCAGACGCTAGGTTAATCGAAGTGCTATCCAAGGTTCCTGGCAGAATCATACTGTTGTTGGATGACAAGTGAGCAGATGCTTTGGAGTTACTTAACCCATGGTATAACTGAAACACCGACGGACTTACACTCAGAATTCCCAAGTGCTGATATTGGCTGTGCCAC MAAAVLGQLGALWIHNLRSRGKLALg|pivgaggtevvltrvmrkceardpfgvshqlsydfkqnqtlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3328 AKT3::DNAH14 ENSG00000117020.19::ENSG00000185842.16 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 287 TRUE 568 TRUE 195 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- DNAH14 ENSG00000185842.16 protein_coding + + chr1:224896262-225399292:+ chr1:225079207:+ chr1:225083964-225586994:+ chr1:225266909:+ chr1:243540853,chr1:243540857 chr1:225053362,chr1:225053358 NA NA chr1:243704155,chr1:243704159 chr1:225241064,chr1:225241060 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none PH_domain(100%),Protein_kinase_domain(100%)|AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 1 0 13 355 1 ENST00000336199.9 ENST00000445597.6 upstream upstream none GAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|GTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAG...CAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAG KLFELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|VVESSLQQLECDPTEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 3329 AKT3::DNAH14 ENSG00000117020.19::ENSG00000185842.16 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 568 TRUE 195 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- DNAH14 ENSG00000185842.16 protein_coding + + chr1:224896262-225399292:+ chr1:225082549:+ chr1:225083964-225586994:+ chr1:225270251:+ chr1:243540853,chr1:243540857 chr1:225053362,chr1:225053358 NA NA chr1:243704155,chr1:243704159 chr1:225241064,chr1:225241060 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none PH_domain(100%),Protein_kinase_domain(100%)|AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_2(86%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N2(96%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 1 1 10 355 11 ENST00000336199.9 ENST00000430092.5 upstream upstream none CTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|GTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCA RTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|vylkaiw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 3330 KIF13B::EXTL3 ENSG00000197892.13::ENSG00000012232.10 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIF13B ENSG00000197892.13 protein_coding - - chr8:29067278-29263124:- chr8:29245346:- chr8:28924795-29120641:- chr8:29102863:- EXTL3 ENSG00000012232.10 protein_coding + - chr8:28600469-28756561:+ chr8:28670605:- chr8:28457986-28614078:+ chr8:28528122:- chr8:29216621,chr8:29216625 chr8:28679050,chr8:28679051 NA NA chr8:29074138,chr8:29074142 chr8:28536567,chr8:28536568 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Kinesin_motor_domain(11%)| Kinesin(18%),Microtub_bd(23%)| 7 2 3 26 16 ENST00000522355.5 unknown upstream downstream duplicates(2),mismatches(1) CGCCGGGTCAACCCCGAAGAGTCGCCGGTGGCCGCGGCAGACGGAAGCCGAACGAGTTCCTCGGCGGCTGCAGGATGGGGGACTCCAAAGTGAAAGTGGCGGTGCGGATACGACCCATGAACCGGCGAG___AGACTGACTTGCATACCAAATGTGTGGTGGATGTGGATGCAAACAAGGTTATTCTTAATCCTGTAAATACGAATCTTTCCAAAGGAGATGCCCG|ACTTGAACTGAGACATCGCTTCTTCCTTCTGACTTGAACTGAGACATCACCTCTTCCTTCAGACTTGCACGGACACATCAGCTCTTCTTGAGTCTCAAGCCTGCTGGTTTTCGAACTAGAATTTACATCACCAGCCCTTCTGGGTCTCCAGCCATCCAACTGCA MGDSKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDAr|lelrhrffllt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3335 STXBP4::ENSG00000253108 ENSG00000166263.13::ENSG00000253108.1 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STXBP4 ENSG00000166263.13 protein_coding + + chr17:54968727-55173632:+ chr17:55081183:+ chr17:53046088-53250993:+ chr17:53158544:+ ENSG00000253108 ENSG00000253108.1 lncRNA + + chr8:34228439-34346731:+ chr8:34313473:+ chr8:34085957-34204249:+ chr8:34170991:+ chr17:55124435,chr17:55124432 chr8:34307185,chr8:34307179 NA NA chr17:53201796,chr17:53201793 chr8:34164703,chr8:34164697 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none PDZ_domain(100%)| PDZ(100%)| 1 1 4 12 2 ENST00000376352.6 unknown downstream upstream duplicates(2) AAAAGAGAATCATGGTACTCGACTGCCAATTACGAAAATCAGAAATGGCTCGAAAAACTTTTGAGGCATCCACTGAAAAGCTTCTTCATTTTGTAGAG___GCT...ATTTTCTGATAATTCTACTCCTTTATCAAATTTAAG___TGAAAGAAGAGCTGTGTTAGCTTCTCAGACTTCCCTCACACCACTGGGAAGGAATGGACGTAGCATCCCAGCAACGCTGGCGCTTGAATCTAAGGAACTTGTTAAATCTGTTCGTGCCTTACTTGATATGGATT|AATTTTGAATACAAGTAACAGACAGAGAAAAATGGTACAAAGGGTTAAAAGCAGTCTTAGTAACATTGGAGATGTGGAGAGAAAATTAGAAGAGAGAAGCAGAAATAAGGAGGCCCTGAGTCACAAGTAAGGAGAACCTCTGGAATGAAAGTAATGAAAACCAGCATTTGAATGGGCAAGATGAAAAACAGAGGGATTCTCAGTCCTTAGCGTGATGGTTG...TGTAGTTCATGGATTTGTTTCTCACTAGGTTACCTAAATGCCTTAGGCTTTTTCAGGTTTCTTTGTGAAATGTGATTCTGTCAATGAGCTTTCAGTTCAAC FSDNSTPLSNLSERRAVLASQTSLTPLGRNGRSIPATLALESKELVKSVRALLDMD|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3337 SCYL2::BLTP3B ENSG00000136021.19::ENSG00000111647.13 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCYL2 ENSG00000136021.19 protein_coding + + chr12:100267140-100341715:+ chr12:100311193:+ chr12:100660918-100735493:+ chr12:100704971:+ BLTP3B ENSG00000111647.13 protein_coding - + chr12:100028455-100142874:- chr12:100058091:+ chr12:100422233-100536652:- chr12:100451869:+ chr12:100312166,chr12:100312166 chr12:100054976,chr12:100054973 NA NA chr12:100705944,chr12:100705944 chr12:100448754,chr12:100448751 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Protein_kinase_domain(59%)| PK_Tyr_Ser-Thr(92%),Pkinase(89%)| 3 1 1 193 129 ENST00000360820.7 unknown downstream upstream none TAAGGATTATAAACTTTATGATGTAGAAACCAAATATGGTTTGCTTCAG___GTTTCTGAAGGATTGTCATTCTTGCATAGCAGTGTGAAAATGGTGCATGGAAATATCACTCCTGAAAATATAATTTTGAATAAAAGTGGAGCCTGGAAAATAATGGGTTTTGATTTTTGTGTATCATCAACCAATCCTTCTGAACAAGAG|GTTTTCAGAGAGTGAAGCTGCTTCTGGAAGCAAATCTTCAGCTTTAAAGATGGACTCTAT...TTCCTTTACTAGTTAAAGTACTTGAAAGTATGTTTTGATTACCATCACTATCAAATGAAAGTATATTCGAATCTTCTCTGTAGTTTAAGATACTACTTGAA KDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQE|vfre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE SCY1-like protein 2 Other SCY1 Q6P3W7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3338 ABL2::ASTN1 ENSG00000143322.22::ENSG00000152092.16 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 570 TRUE 196 ABL2 ENSG00000143322.22 protein_coding - + chr1:179099330-179229684:- chr1:179143299:+ chr1:179068465-179198819:- chr1:179112434:+ ASTN1 ENSG00000152092.16 protein_coding - - chr1:176857302-177164973:- chr1:177032849:- chr1:176826438-177134109:- chr1:177001985:- chr1:179148475,chr1:179148476 chr1:177053486,chr1:177053485 NA NA chr1:179117610,chr1:179117611 chr1:177022622,chr1:177022621 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |Annexin-like_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%) |ASTN1_2_EGF_Fn(100%),ASTN_1_2_N(38%),Annexin_like(100%),FXa_inhibition(100%) 0 3 1 2 4 unknown ENST00000367657.7 downstream downstream none TAAAATGGTGAGCATTCACAATTCCCAAAGTGGGTGGAGAGTGACCTAAAGGAAAATTTCCAGCAATCCGCAAAAGACTGAGTCAGAATGGAGTTACTTCAAAATCTCTGAGAACACTTTTAAAAT|GGTGGCATGATCGCTCTGCTGCTGTCCATCTTGTGCCTGGTGATGATCCTGTATACTCGCCGGCGCTGGTGCAAACGCCGCCGGGTCCCGCAGCCCCAGAAGAGTGCCAGTGCTGAGGCAGCCAATGAGATTCACT...ACGGACGGGAGAGCCTGCGCAATGCCCGCGTGCAGGGCCACAACTCCAGTGGCACCCTGAGCATCCGGGAGACACCTATCCTGGACGGCTATGAGTATGACATCACTGATCTGCGCCACCATCTGCAGAGGGAGTGC...ACCCCTGTGAACACCAATGTGACCCCGAAACTG___GGGAATGCCTCTGCTATGAAGGCTACATGAAGGATCCAGTACATAAGCACCTTTGCATTCGGAACGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-488 chr1:177029363-177029445:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3339 ABL2::ASTN1 ENSG00000143322.22::ENSG00000152092.16 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 570 TRUE 196 ABL2 ENSG00000143322.22 protein_coding - - chr1:179099330-179229684:- chr1:179148775:- chr1:179068465-179198819:- chr1:179117910:- ASTN1 ENSG00000152092.16 protein_coding - + chr1:176857302-177164973:- chr1:177055114:+ chr1:176826438-177134109:- chr1:177024250:+ chr1:179148732,chr1:179148735,chr1:179148734 chr1:177053943,chr1:177053940,chr1:177053942 NA NA chr1:179117867,chr1:179117870,chr1:179117869 chr1:177023079,chr1:177023076,chr1:177023078 NA NA sense antisense unknown intron intron inversion/5'-5' medium none none none 1 0 6 11 4 ENST00000502732.6 unknown upstream upstream mismappers(4) GGGAAAAGCAGAATCT___ACGGAGTCTTGCTCTGTTGCCTAGGCTGGAGTGCAGTGGCATGATCTCGGCGTACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTACTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG|GTGAGATAATGAAGCTTCCAAAAAGCGCAGCAAATTACCTAAAGTGGTAAAGCCAGCATATGAAGTCCACTCTTCCAACTGTAAAcCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Abelson tyrosine-protein kinase 2 TK Abl P42684 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE c-abl oncogene 2, non-receptor tyrosine kinase 1 AML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3343 SMAD4::AKAP7 ENSG00000141646.16::ENSG00000118507.19 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 571 FALSE NA SMAD4 ENSG00000141646.16 protein_coding + + chr18:51028528-51085045:+ chr18:51028665:+ chr18:48554898-48611415:+ chr18:48555035:+ AKAP7 ENSG00000118507.19 protein_coding + + chr6:131135467-131283535:+ chr6:131160059:+ chr6:131456607-131604675:+ chr6:131481199:+ chr18:51029824,chr18:51029822 chr6:131157788,chr6:131157783 NA NA chr18:48556194,chr18:48556192 chr6:131478928,chr6:131478923 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |AKAP7_2'5'_RNA_ligase-like_domain(100%),PKA-RI-RII_subunit_binding_domain_of_A-kinase_anchor_protein(100%) |AKAP7_NLS(100%),AKAP7_RIRII_bdg(100%) 0 1 1 0 29 ENST00000588860.6 ENST00000431975.7 downstream upstream duplicates(1) CCTCAGTCCTGTAGCCTGCAAGGAACTGAATGGTGCCAACAACCACATGAACTTGGAAGCAGATCCTTTGTTCCAGCCTCACTTTGTAGAGGACCCAGCTAAGCCATGCCTGGAATCCTGACTCAGAGAATCT|TCACTGATGAACCTCAAATAAATTTGAAGAGAAGTCAAGAAAATGAATGGGTCAAGAGTGATCAAGTAAAGAAGAGGAAAAAAAAGAGAAAAGATTATCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SMAD family member 4 1 Yes colorectal, pancreatic, small intestine gastrointestinal polyp juvenile polyposis epithelial TSG large_deletion, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 3345 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 288 TRUE 572 TRUE 197 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3676145:- chr16:3701640-3767554:- chr16:3726146:- chr16:3802365,chr16:3802365,chr16:3802370,chr16:3802370 chr16:3677129,chr16:3677121,chr16:3677060,chr16:3677131 NA NA chr16:3852366,chr16:3852366,chr16:3852371,chr16:3852371 chr16:3727130,chr16:3727122,chr16:3727061,chr16:3727132 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Hsp90_protein(100%) |Exo_endo_phos(100%),HATPase_c(0%),HSP90(100%) 15 8 15 111 671 ENST00000262367.10 ENST00000246957.10 upstream downstream duplicates(5) CTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG___ATGGGAATAACTGGGAACACAAGTCCATTTGGACAGCCCTTTAGTCAAGCTGGAGGGCAGCCAATGGGAGCCACTGGAGTGAACCCCCAGTTAGCCAGCAAACAGAGCATGGTCAACAGTTTGCCCACCTTCCCTACAGAcATCAAGAATACTTCAGTCACCAACGTGCCAAATATG|TTCTGGAGTGTTTGAAATCGCCGAAGCTTCGGGAGTTAGAACCGGGACAAAAATCATCATCCACCTGAAATCCGACTGCAAGGAGTTTTCCAGCGAGGCCCGGGTGCGAG___ATGTGGTAACGAAGTACAGCAACTTCGTCAGCTTCCCCTTGTACTTGAATGGAAGGCGGATGAACACCTTGCAG___GCCATCTGGATGATGGACCCCAAGGATGTCCGTGAGTGGCAACATGAGGAGTTCTACCGCTACGTCGCGCAGGCTCACGACAAGC GMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNM|fwsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 3346 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 572 TRUE 197 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3666118:- chr16:3701640-3767554:- chr16:3716119:- chr16:3802365,chr16:3802365,chr16:3802370,chr16:3802370 chr16:3677129,chr16:3677121,chr16:3677060,chr16:3677131 NA NA chr16:3852366,chr16:3852366,chr16:3852371,chr16:3852371 chr16:3727130,chr16:3727122,chr16:3727061,chr16:3727132 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Hsp90_protein(70%) |Exo_endo_phos(100%),HSP90(46%) 1 0 0 111 608 ENST00000262367.10 ENST00000246957.10 upstream downstream duplicates(1) GCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG___ATGGGAATAACTGGGAACACAAGTCCATTTGGACAGCCCTTTAGTC...GAcATCAAGAATACTTCAGTCACCAACGTGCCAAATATG|GAAACTCCGGGACGTTTTACAGCAGAGGCTGATCAAATTCTTCATTGACCAGAGTAAAAAAG DIKNTSVTNVPNM|etpgrftaeadqilh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 3347 CDK1::EBF1 ENSG00000170312.17::ENSG00000164330.18 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 289 FALSE NA FALSE NA CDK1 ENSG00000170312.17 protein_coding + + chr10:60778331-60794852:+ chr10:60780202:+ chr10:62538089-62554610:+ chr10:62539960:+ EBF1 ENSG00000164330.18 protein_coding - - chr5:158695920-159099916:- chr5:158731157:- chr5:158122928-158526924:- chr5:158158165:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Protein_kinase_domain(3%)|Transcription_factor_COE1_helix-loop-helix_domain(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|COE1_HLH(100%) 3 3 17 3693 14 ENST00000316629.8 ENST00000313708.11 downstream downstream duplicates(2),mismatches(1) TTCAAAGCTGGCTCTTGGAAATTGAGCGGAGAGCGACGCGGTTGTTGTAGCTGCCGCTGCGGCCGCCGCGGAATAATAAGCCGG___GATCTACCATACCCATTGACTAACTATGGAAGATTATACCAAAATAGAGAAAATTGGAGAAG|CGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGACCCTGAGCGTTTGCCAAAG___GAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCACACAACAACCAG___GAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTG MEDYTKIEKIGE|aLNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Cyclin-dependent kinase 1 CMGC CDK CDC2 P06493 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE early B-cell factor 1 1 Yes lipoma mesenchymal TSG, fusion translocation 3348 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 290 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59656027:+ chr17:57697045-57774317:+ chr17:57733388:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Clathrin_propeller_repeat(96%)| Clathrin_propel(62%)| 4 6 7 897 551 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(3),mismatches(1) CCAGAAGCACAAAATGATTTTCCTGTTGCAATGCAG___ATCAGTGAAAAGCATGATGTGGTGTTCTTGATAACCAAGTATGGTTATATCCACCTCTATGATCTTGAGACTGGTACCTGCATCTACATGAATAGAATCAGTGGAGAAACAATTTTTGTTACTGCACCTCATGAAGCCACAGCTGGAATAATTGGAGTAAACAGAAAGGGACAA|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCtGG PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3384 HMCES::MECOM ENSG00000183624.14::ENSG00000085276.19 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 292 TRUE 578 TRUE 198 HMCES ENSG00000183624.14 protein_coding + + chr3:129278828-129306186:+ chr3:129302142:+ chr3:128997671-129025029:+ chr3:129020985:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169102226:- chr3:168801287-169381563:- chr3:168820014:- chr3:129302599,chr3:129302598 chr3:169112608,chr3:169112609 NA NA chr3:129021442,chr3:129021441 chr3:168830396,chr3:168830397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none SOS_response_associated_peptidase_(SRAP)(100%)|Zinc_finger__C2H2_type(38%) SRAP(100%)|zf-C2H2(28%),zf-C2H2_4(9%),zf-C2H2_6(12%) 26 13 27 1583 65 ENST00000383463.9 ENST00000651503.2 downstream downstream duplicates(21),mismatches(6) TCAGGTAGCATTGGTGCTGCAGATAGTCCTGAGAACTGGGAGAAAGTCTGGGACAACTGGAGGCTGCTGACAATGGCCGGGATCTTTGACTGCTGGGAGCCCCCAGAGGGAGGAGATGTCCTGTATTCCTATACCATCATCACAGTGGATTCCTGCAAAGGCTTGAGTGACATCCACCACAG___GATGCCTGCCATATTAGATGGAGAGGAGGCAGTTTCTAAATGGCTTGACTTTGGTGAAGTCTCAACTCAGGAAGCTCTGAAATTAATCCACCCAACAGAGAACATCACCTTCCATGCAGTCTCTTCTGTGGTGAACAACTCGCGAAACAACACTCCTGAGTGTCTGGCTCCTGTCGACTTGGTGGTCAAAAAG|ATGTCAGCTATTGAAAACATGGCAGAAAAGCTAGAGAGCTTCAGTGCCCTGAAACCTGAGGCCAGTGAGCTCTTACAGTCAGTGCCCTCTATGTTCAACTTCAGGGCGCCTCCCAATGCCCTGCCAGAGAACCTTCTGCGGAAGGGAAAGGAGCGCTATACCTGCAG___ATACTGTGGCAAGATTTTTCCAAGGTCTGCAAACCTAACACGGCACTTGAGAACCCACACAGGAGAGCAGCCTTACAG___ATGCAAATA SGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKK|MSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNALPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 3385 HMCES::MECOM ENSG00000183624.14::ENSG00000085276.19 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 293 TRUE 578 TRUE 198 HMCES ENSG00000183624.14 protein_coding + + chr3:129278828-129306186:+ chr3:129302142:+ chr3:128997671-129025029:+ chr3:129020985:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169107952:- chr3:168801287-169381563:- chr3:168825740:- chr3:129302599,chr3:129302598 chr3:169112608,chr3:169112609 NA NA chr3:129021442,chr3:129021441 chr3:168830396,chr3:168830397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none SOS_response_associated_peptidase_(SRAP)(100%)|Zinc_finger__C2H2_type(38%) SRAP(100%)|zf-C2H2(28%),zf-C2H2_4(9%),zf-C2H2_6(12%) 3 5 29 1583 24 ENST00000383463.9 ENST00000651503.2 downstream downstream duplicates(8),mismatches(2) TGTCCTGTATTCCTATACCATCATCACAGTGGATTCCTGCAAAGGCTTGAGTGACATCCACCACAG___GATGCCTGCCATATTAGATGGAGAGGAGGCAGTTTCTAAATGGCTTGACTTTGGTGAAGTCTCAACTCAGGAAGCTCTGAAATTAATCCACCCAACAGAGAACATCACCTTCCATGCAGTCTCTTCTGTGGTGAACAACTCGCGAAACAACACTCCTGAGTGTCTGGCTCCTGTCGACTTGGTGGTCAAAAAG|TTCCAACTGCCTGATCAGAGAACTTGG___ATGTCAGCTATTGAAAACATGGCAGAAAAGCTAGAGAGCTTCAGTGCCCTGAAACCTGAGGCCAGTGAGCT...CAGTtCCCTCTATGTTCAACTTCAGGGCGCCTCCCAATGCCCTGCCAGAGAACCTTCTGCGGAAGGGAAAGGAGCGCTATACCTGCAG___ATACTGTGGCAAGATTTTTCCAAGGTCTGCAAACCTAACACGGCACTTGAGAACCCACACAGGAGAGCAGCCTTACAG___ATGCAAATACTGTGACAGgTCATTTAGCATATCTTCTAACTTGCAAAGGCATGTTCGCAACATCCACAATAAAGAG...GACAAAGAAGATGCTaACTTCACAGAAATTCGAAATTTCATTGGGAACAGCAACCATGGCAGCCAATCTCtCAGGAATGTGGAGGAGAG___AATGAATGGCAG...AGgGACAAGTAATTTACATGAAGGAAACCCTGAGGATGACTATGAAGAAACCAGTGCCCTGGAGATGAGTTGCAAGACATCCCCAGTGAG___GTATAAAGAGG VLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKK|FQLPDQRTWMSAIENMAEKLESFSALKPEASE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 3386 TLE5::GNA11 ENSG00000104964.15::ENSG00000088256.9 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TLE5 ENSG00000104964.15 protein_coding - - chr19:3052910-3063107:- chr19:3061160:- chr19:3052908-3063105:- chr19:3061158:- GNA11 ENSG00000088256.9 protein_coding + - chr19:3094362-3123999:+ chr19:3119304:- chr19:3094360-3123997:+ chr19:3119302:- chr19:3058034,chr19:3058036 chr19:3120662,chr19:3120661 NA NA chr19:3058032,chr19:3058034 chr19:3120660,chr19:3120659 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Groucho/TLE_N-terminal_Q-rich_domain(31%)| TLE_N(1%)| 4 11 11 2010 543 ENST00000327141.9 unknown upstream downstream duplicates(6),mismatches(2) GGCGCACAGCCGGGGCGCAGCCCGCGCCCCCCGCCGCGATTGACATGATGTTTCCACAAAGCAGGCATTCG___GGCTCCTCGCACCTACCCCAGCAACTCAAATTCACCACCTCGGACTCCTGCGACCGCATCAAAGACGAATTTCAGCTACTGCAAGCTCAGTACCACAG|CAGGTCCTTCTTGTTGAGGAAGAGGATGACGGAGGAGTTCTGGAACCAGGG___GACTTGGTCGTATTCGCTGAGGGCGACGAGAAACATGATGGATGTCACGTTCTCAAAGCAGTGGATCCACTTCCTCCGCTCCGACCGCTGGCCCCCCACATCCACCATCCTGAAAGGACACAGCGCCAGGACTCAGCCACCTGGCGCCCCAAGGCCCAA MMFPQSRHSGSSHLPQQLKFTTSDSCDRIKDEFQLLQAQYHs|rsfllrkrmteefwnqgtwsyslratrnmmdvtfskqwihflrsdrwpptstilkghsartqppgaprp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3387 PAFAH1B2::SIK3 ENSG00000168092.14::ENSG00000160584.17 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAFAH1B2 ENSG00000168092.14 protein_coding + + chr11:117144284-117176894:+ chr11:117144418:+ chr11:117015000-117047610:+ chr11:117015134:+ SIK3 ENSG00000160584.17 protein_coding - - chr11:116843402-117098437:- chr11:116957064:- chr11:116714118-116969153:- chr11:116827780:- chr11:117148783,chr11:117148777 chr11:117082546,chr11:117082552 NA NA chr11:117019499,chr11:117019493 chr11:116953262,chr11:116953268 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none GDSL-like_Lipase/Acylhydrolase_family(13%)|Protein_kinase_domain(89%) Lipase_GDSL_2(0%)|Kinase-like(100%),PK_Tyr_Ser-Thr(36%),Pkinase(36%) 2 8 11 780 130 ENST00000304808.10 ENST00000445177.6 downstream downstream duplicates(4),mismatches(2) CGGAGGAGGGACGCGCCGGAGCGGGACCGACGGGACCGAGCGAGCGACCGACGCGCCACCCGCCGACGCCTCAGCCGCTTGGGGCCCGCACGGACCCTCTACTTCA|GTTGCTATCAAGATCATAGATAAGACCCAGCTGGATGAAGAAAACTTGAAGAAGATTTTCCGGGAAGTTCAAATTATGAAGATGCTTTGCCACCCCCATATCATCAGGCTCTACCAG___GTTATGGAGACAGAACGGATGATTTATCTGGTGACAGAATATGCTAGTGGAGGGGAAATATTTG___ACCACCTGGTGGCCCATGGTAGAATGGCAGAAAAGGAGGCACGTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase SIK3 CAMK CAMKL QIK Q9Y2K2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa 1 Yes MLCLS leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3390 HDAC4::ILKAP ENSG00000068024.18::ENSG00000132323.9 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 579 TRUE 199 HDAC4 ENSG00000068024.18 protein_coding - - chr2:239048168-239401654:- chr2:239400978:- chr2:239969864-240323348:- chr2:240322672:- ILKAP ENSG00000132323.9 protein_coding - - chr2:238170402-238203708:- chr2:238182186:- chr2:239079043-239112349:- chr2:239090827:- chr2:239380394,chr2:239380403 chr2:238183869,chr2:238183868 NA NA chr2:240302089,chr2:240302098 chr2:239092510,chr2:239092509 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Protein_phosphatase_2C(53%) |PP2C(65%) 0 2 4 6 279 ENST00000543185.6 ENST00000254654.8 upstream downstream duplicates(2) CGACGCTGGAGTGGGGAGAAGCATCATGGTTCAAC|GCAATCTTGTGTCGTTATAATGAGGAGAGTCAAAAACATGCAGCCTTAAGCCTCAGCAAAGAGCATAATCCAACTCAGTATGAAGAGCGGATGAGGATACAGAAGGCTGGAGGAAACGTCAG___GGATGGGCGTGTTTTGGGCGTGCTAGAGGTGTCACGCTCCA...TTCATTTTGTTGGCCTGTGATGGGCTCTTCAAGGTCTTTACCCCAGAAGAAGCCGTGAACTTCATCTTGTCCTGTCTCtAG___GATGAAAAGATCCAGACCCG...ACGAAGCAGCCTGCAACAGGCTGGCCAACAAGGCGGTGCAGCGGGGCTCGGCCGACAACGTCACTGTGATGGTGGTGCGGATAGGGCACTGAGGGGTGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3391 HDAC4::ILKAP ENSG00000068024.18::ENSG00000132323.9 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 579 TRUE 199 HDAC4 ENSG00000068024.18 protein_coding - - chr2:239048168-239401654:- chr2:239400978:- chr2:239969864-240323348:- chr2:240322672:- ILKAP ENSG00000132323.9 protein_coding - - chr2:238170402-238203708:- chr2:238173653:- chr2:239079043-239112349:- chr2:239082294:- chr2:239380394,chr2:239380403 chr2:238183869,chr2:238183868 NA NA chr2:240302089,chr2:240302098 chr2:239092510,chr2:239092509 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Protein_phosphatase_2C(38%) |PP2C(17%) 0 0 0 6 219 ENST00000543185.6 ENST00000254654.8 upstream downstream mismatches(1) GAAGCATCATGGTTCAAC|GGATGGGCGTGTTTTGGGCGTGCTAGAGGTGTCACGCTCCATTGGGGACGGGCAGTACAAGCGCTGCGGTGTCACCTCTGTGC...CCAGAAaAAGCCGTGAACTTCATCTTGTCCTGTCTCGAG___GATGAAAAGATCCAGACCCGGGAAGGGAAGTCCGCAGCCGACGCCCGCTACGAAGCAGCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3392 HDAC4::ILKAP ENSG00000068024.18::ENSG00000132323.9 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 579 TRUE 199 HDAC4 ENSG00000068024.18 protein_coding - - chr2:239048168-239401654:- chr2:239400978:- chr2:239969864-240323348:- chr2:240322672:- ILKAP ENSG00000132323.9 protein_coding - - chr2:238170402-238203708:- chr2:238183740:- chr2:239079043-239112349:- chr2:239092381:- chr2:239380394,chr2:239380403 chr2:238183869,chr2:238183868 NA NA chr2:240302089,chr2:240302098 chr2:239092510,chr2:239092509 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Protein_phosphatase_2C(64%) |PP2C(74%) 0 0 0 6 292 ENST00000543185.6 ENST00000254654.8 upstream downstream mismatches(1) CTGGAGTGGGGAGAAGCATCATGGTTCAAC|GAAGCCTGCCTGGAAAGATGGGTCCACTGCCACGTGTGTTCTGGCTGTAGACAACATTCTTTATATTGCCA...TTTTGGGCGTGCTAGAGGTGTCACGCTCCtTTGGGGAaGGaCAGTACAAGCGCTaCGGTGTCgCCgCTGTGCCCGAaATCAGACGCgGCCAGCTGcCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3397 PLEKHM3::PIKFYVE ENSG00000178385.15::ENSG00000115020.17 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHM3 ENSG00000178385.15 protein_coding - - chr2:207821288-208025527:- chr2:207976651:- chr2:208686012-208890251:- chr2:208841375:- PIKFYVE ENSG00000115020.17 protein_coding + - chr2:208266255-208358746:+ chr2:208308397:- chr2:209130979-209223470:+ chr2:209173121:- chr2:207962457,chr2:207962457,chr2:207962457,chr2:207962144 chr2:208311262,chr2:208311286,chr2:208311261,chr2:208311197 NA NA chr2:208827181,chr2:208827181,chr2:208827181,chr2:208826868 chr2:209175986,chr2:209176010,chr2:209175985,chr2:209175921 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PH_domain(100%)| PH(100%)| 1 0 2 20 0 ENST00000427836.8 unknown upstream downstream mismatches(1) GAGGAGTTCAGAGCAAAACCTGCAAGTCACACTGAGGAACAAACCCAAGGATCAAATGGGTGGGCATGAACTCAGGAAGAACAAACGCCAATCTGTGACTACCAGCTTCCTGAGCATTTTGACGACTTTGTCTTTGGAACGAGGACTCACTGCTCAG...GTTTCAAATGTGCAG|ATAAAGTCTCACTCTGTCACCGAGGCTGGACTGCAGTGGCAAAATCATCGCTCACTGCAGCCTCAACCTGCCAAGCTCAAGCAATC...GCCTAAcCTGGTCTTGAtCTCCTAGACgaAAGaAATCCGCCTGCCTCAGCCACCCAACTTGCTGGGATTACAGGCATGAGCCACTGCACCCTGCCCCAAC FKCA|dkvslchrgwtavakssltaastcqaqa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3399 FGFR2::ULK4 ENSG00000066468.24::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 294 TRUE 582 TRUE 200 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- chr10:121578179 chr3:41263465 NA NA chr10:123337693 chr3:41304956 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 36 39 87 33076 263 ENST00000613048.4 ENST00000301831.9 upstream downstream duplicates(24),low_entropy(2),mismatches(10) AAG___TGACTGCAGCAGCAGCGGCAGCGCCTCGGTTCCTGAGCCCACCGCAGGCTGAAGGCATTGCGCGTAGTCCATGCCCGTAGAGGAAGTGTGCAGATGGGATTAACGTCCACATGGAGATATGGAAGAGGACCGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|ATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGG___TTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAGGCAAGAAGGTGCTTAGCACAAGCCCGCCCTGTGGCCCCAGCCCTCGGATGCATAAGCAAGGTCAGCTCCCAGACACCTTTGC MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|dhlq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 TRUE FALSE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 3400 FGFR2::ULK4 ENSG00000066468.24::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 582 TRUE 200 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41246992:- chr3:41288090-42003622:- chr3:41288483:- chr10:121578179 chr3:41263465 NA NA chr10:123337693 chr3:41304956 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 1 1 38 33076 288 ENST00000613048.4 ENST00000301831.9 upstream downstream duplicates(8),mismatches(4) AAG___TGACTGCAGCAGCAGCGGCAGCGCCTCGGTTCCTGAGCCCACCGCAGGCTGAAGGCATTGCGCGTAGTCCATGCCCGTAGAGGAAGTGTGCAGATGGGATTAACGTCCACATGGAGATATGGAAGAGGACCGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|TTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAGGCAAGAAGGTGCTTAGCACAAGCCCGCCCTGTGGCCCCAGCCCTCGGATGCATAAGCAAGGTCAGCTCCCAGACACCTTTGCCACATCCCCTCACAGCTGTCTTTGGACCTAATAAAGTCAGCTTAACCCAGAACCTGGTGG MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|vhlptvrwlpwpwksskplgtrqega* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 TRUE FALSE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 3401 FGFR2::ULK4 ENSG00000066468.24::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 582 TRUE 200 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121597962:- chr10:123237846-123357972:- chr10:123357476:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- chr10:121578179 chr3:41263465 NA NA chr10:123337693 chr3:41304956 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none none none 1 0 7 17630 263 ENST00000613048.4 ENST00000301831.9 upstream downstream duplicates(2) CAAATCCGAGGGCAGCCCGCGGGCGTCATGCCCGCGCTCCTCCGCAGCCTGGGGTACGCGTGAAGCCCGGGAGGCTTGGCGCCGGCGAAGACCCAAGGACCACTCTTCTGCGTTTGGAGTTGCTCCCCaCAACCCCGGGCTCGTCGCTTTCTCCATCCCGACCCACGCGGGGCGCGGGGACAACACAGGTCGCGGAGGAGCGTTGCCATTCAAG|ATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGG___TTCATTTGCCGACAGTGCGGTGcCTCCCTTGGCCgTGGAAATCCTCCAAGCCGTTGGGCACTAGGCAAGAAGGTGCTTAGCACAAGCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Fibroblast growth factor receptor 2 TK FGFR P21802 TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 3402 CTNNB1::ULK4 ENSG00000168036.18::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 295 TRUE 583 TRUE 201 CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41199670:+ chr3:41236232-41301587:+ chr3:41241161:+ ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 21 13 80 11642 263 ENST00000396185.8 ENST00000301831.9 downstream downstream duplicates(24),mismatches(8) CTCTCGGTCTGTGGCAGCAGCGTTGGCCCGGCCCCGGGAGCGGAGAGCGAGGGGAGGCGGAGACGGAGGAAGGTCTGAGGAGCAGCTTCAGTCCCCGCCGAGCCGCCACCGCAGGTCGAGGACGGTCGGACTCCCGCGGCGGGAGGAGCCTGTTCCCCTGAG|ATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGG___TTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAGGCAAGAAGGTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 3403 CTNNB1::ULK4 ENSG00000168036.18::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 583 TRUE 201 CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41199622:+ chr3:41236232-41301587:+ chr3:41241113:+ ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 0 4 11 17798 263 ENST00000645900.1 ENST00000301831.9 downstream downstream duplicates(5),mismatches(1) GCGGCGCCATTTTAAGCCTCTCGGTCTGTGGCAGCAGCGTTGGCCCGGCCCCGGGAGCGGAGAGCGAGGGGAGGCGGAGACGGAGGAAGGTCTGAGGAGCAGCTTCAGTCCCCGCCGAGCCGCCACCGCAG|ATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGG___TTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAGGCAAGAAGGTGCTTAGCACAAGCCCGCCCTGTGGCCCCAGCCCTCGGATGCATAAGCAAGGTCAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 3404 CTNNB1::FGFR2 ENSG00000168036.18::ENSG00000066468.24 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41199670:+ chr3:41236232-41301587:+ chr3:41241161:+ FGFR2 ENSG00000066468.24 protein_coding - + chr10:121478332-121598458:- chr10:121499566:+ chr10:123237846-123357972:- chr10:123259080:+ chr3:41235003 chr10:121489784 NA NA chr3:41276494 chr10:123249298 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' medium none none none 3 6 23 11642 121 ENST00000396185.8 unknown downstream upstream duplicates(3) GCGCCATTTTAAGCCTCTCGGTCTGTGGCAGCAGCGTTGGCCCGGCCCCGGGAGCGGAGAGCGAGGGGAGGCGGAGACGGAGGAAGGTCTGAGGAGCAGCTTCAGTCCCCGCCGAGCCGCCACCGCAGGTCGAGGACGGTCGGACTCCCGCGGCGGGAGGAGCCTGTTCCCCTGAG|GGAAGGCTGCCAGCCTGGGCATCACAAGAGAAAGAGAACTCCCAGACCTCCCTTTTTGCAATATCCCATGTAACTCTGAGCTCCATTAGCAAAACCAGAAGTTCCGCCAAAAGAGATGAGAAGCCTGGGTCCTCCCCACACCTGGCCCTGGTACGCAGCCAGGGGCTGCCTCAGTCAGTGGTGCCATGACACCTGGGGCAAGACAGCACAGTGTTCCTCCCCGGCATCAGGCTCCAAGGTGGGGAACATCTCAAAGCACTCTAGTTTTCCTTGGGAGTCACTCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 3405 FGFR2::CTNNB1 ENSG00000066468.24::ENSG00000168036.18 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 584 TRUE 202 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41224021:+ chr3:41236232-41301587:+ chr3:41265512:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |Armadillo/beta-catenin-like_repeat(100%) |Arm(100%) 0 2 4 33076 13984 ENST00000613048.4 ENST00000643541.1 upstream upstream duplicates(1) CGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|GGTATTTGAAGTATACCATACAACTGTTTTGAAAATCCAGCGTGGACAATGGCTAgTCAAG___CTGATTTGATGGAGTTGGACATGGCCATGGAACCAGACAGAAAAGCGGCTGTTAGTCACTGGCAGCAACAGTCTTACCTGGACTCTGGAATCCATTCTGGTGCCA MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|gylkytiqlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation 3406 FGFR2::CTNNB1 ENSG00000066468.24::ENSG00000168036.18 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 584 TRUE 202 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41233341:+ chr3:41236232-41301587:+ chr3:41274832:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Armadillo/beta-catenin-like_repeat(71%) |Arm(12%) 0 3 3 33076 23703 ENST00000613048.4 ENST00000643541.1 upstream upstream duplicates(1) CGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|GTGGAATGCAAGCTTTAGGACTTCACCTGACAGATCCAAGTCAACGTCTTGTTCAGAACTGTCTTTGGACTCTCAGGAATCTTTCAGATGCTGCAACTAAACAG___GAAGGGATGGAAGGTCTCCTTGGGACTCTTGTTCAGCTTCTGGGTTCAGATGATATAAATGTGGTCACCTGTGCAGCTGGAATTCTTTCTAACCTCACTTGCAATAATTATAAGAACAAGATGATGGTCTGCCAAGTGGG MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|gGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation 3407 FGFR2::CTNNB1 ENSG00000066468.24::ENSG00000168036.18 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 584 TRUE 202 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121565438:- chr10:123237846-123357972:- chr10:123324952:- CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41224954:+ chr3:41236232-41301587:+ chr3:41266445:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Immunoglobulin_domain(100%)|Armadillo/beta-catenin-like_repeat(100%) I-set(0%),Ig_3(1%)|Arm(100%) 0 1 3 23902 20809 ENST00000358487.10 ENST00000643541.1 upstream upstream duplicates(1) CACGCCTAGAGACTCCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG|ATATTGATGGACAGT...ACACAGTTTGATGCTGCTCATCCCACTAATGTCCAGCGTTTGGCTGAACCATCACAGATGCTGAAACATGCAGTTGTAAACTTGATTAACTATCAAGATGA TPRDSGLYACTASRTVDSETWYFMVNVT|dIDGQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation 3408 SNX19::FGFR2 ENSG00000120451.11::ENSG00000066468.24 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 296 FALSE NA FALSE NA SNX19 ENSG00000120451.11 protein_coding - - chr11:130866250-130916479:- chr11:130903255:- chr11:130736145-130786374:- chr11:130773150:- FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121520169:- chr10:123237846-123357972:- chr10:123279683:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none PXA_domain(100%),PX_domain(100%),Sorting_nexin_C_terminal(18%)|Immunoglobulin_I-set_domain(64%),NA(100%),Protein_kinase_domain(100%) Nexin_C(0%),PX(100%),PXA(100%)|I-set(29%),Ig_3(14%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(9%) 3 5 8 303 37462 ENST00000265909.9 ENST00000457416.7 upstream downstream duplicates(4),mismatches(3) GGAAGGCAgTGTG___GAGTCTGAGACTCTATCCATGTCTGCGATGGAATCTTTTATTGAAAAACAGACAAAGTTACTGGAAATGCAGCCAACAAAAGCCCCAGAAAAAGATCCTGAACAACCTCCCAAAGGACGTGTGGACAGTTGCGTGTCAGATGCAGCCGTGCCAGCCCAAGACCCCAGCAACAGCGATCCAG___GAACAGAGACAGAGTTAGCTGACACAGCCCTGGATCTGCTCCTCTTGCTACTAACAGAACAGTGGAAATGGCTATGTACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGACCCTAGTTCAAAG|AGCGATCGCCTCACCGGCCCATCCTCCAAGCCGGACTGCCGGCAAATGCCTCCACAGTGGTCGGAGGAGACGTAGAGTTTGTCTGCAAGGTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAGCACGTGGAAAAGAACGGCAGTAAATACGGGCCCGACGGGCTGCCCTACCTCAAGGTTCTCAAG___CACTCGGGGATAAATAGTTCCAATGCAGAAGTGCTGGCTCTGTTCAATGTGACCGAGGCGGATGCTGGGGAATATATATGTAAGGTCTCCAATTATATAGGGCAGGCCAACCAGTCTGCCTGGCT EGsVESETLSMSAMESFIEKQTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLCTENMQKFLRLIFGTLVQr|aiaspahppsrtagkclhsgrrrrrvclqglq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation 3437 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 0 1 3 217 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(1) CCGAAGGCCTTCAGGTTATGTGAAACAAAAGAATTTTGTGAGTGTTCACCTGGGCTTCAGGACATGGGAGGTTCCAGGCAACCAGAACAGCCTGACGCACA...GAAGGACTGAATGAGATGAAGTAGAGGAAAGTCTTCTAGGACAGGGGTCCTCAACCCTTGGGCCACAGACTGGTGGCAGGAGGGCTGCACAGCAG___ATGGG...ACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 3440 FKBP2::DNAJC4 ENSG00000173486.14::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 297 TRUE 587 TRUE 203 FKBP2 ENSG00000173486.14 protein_coding + + chr11:64241003-64244132:+ chr11:64243311:+ chr11:64008475-64011604:+ chr11:64010783:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533 chr11:64233073,chr11:64233058,chr11:64233057,chr11:64233056,chr11:64233053,chr11:64233033,chr11:64233025,chr11:64233016 NA NA chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005 chr11:64000545,chr11:64000530,chr11:64000529,chr11:64000528,chr11:64000525,chr11:64000505,chr11:64000497,chr11:64000488 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FKBP-type_peptidyl-prolyl_cis-trans_isomerase(57%)| FKBP_C(53%)| 179 63 172 2104 577 ENST00000309366.9 ENST00000321685.7 downstream upstream duplicates(51),low_entropy(5),mismatches(14) ACATGAGGCTGAGCTGGTTCCGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGCCGTGGCCACGGCCACGGGGGCCGAGGGCAAAAGGAAGCTGCAGATCGGGGTCAAGAAGCGGGTGGACCACTGTCCCATCAAATCGCGCAAAGGGGATGTCCTGCACATGCACTACACG___GGGAAGCTGGAAGATGGGACAGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTGGG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAG MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLg|KVKQMHLNFMDEKDRIITAFYNEARARARANRGILQQERQRLGQRQPPPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3441 FKBP2::DNAJC4 ENSG00000173486.14::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 587 TRUE 203 FKBP2 ENSG00000173486.14 protein_coding + + chr11:64241003-64244132:+ chr11:64243497:+ chr11:64008475-64011604:+ chr11:64010969:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FKBP-type_peptidyl-prolyl_cis-trans_isomerase(74%)| FKBP_C(66%)| 6 5 174 1373 577 ENST00000309366.9 ENST00000321685.7 downstream upstream duplicates(33),mismatches(6) GGGGAAGCTGGAAGATGGGACAGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTGGGG...___GATGTGTGAGGGGGAAAAGCGCAAGCTGGTGATCCCATCCGAGCTAG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAGCCAACCCAAG MCEGEKRKLVIPSEL|gr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3443 FKBP2::DNAJC4 ENSG00000173486.14::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 587 TRUE 203 FKBP2 ENSG00000173486.14 protein_coding + + chr11:64241003-64244132:+ chr11:64242558:+ chr11:64008475-64011604:+ chr11:64010030:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533 chr11:64233073,chr11:64233058,chr11:64233057,chr11:64233056,chr11:64233053,chr11:64233033,chr11:64233025,chr11:64233016 NA NA chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005 chr11:64000545,chr11:64000530,chr11:64000529,chr11:64000528,chr11:64000525,chr11:64000505,chr11:64000497,chr11:64000488 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none FKBP-type_peptidyl-prolyl_cis-trans_isomerase(16%)| FKBP_C(3%)| 2 1 101 2167 577 ENST00000309366.9 ENST00000321685.7 downstream upstream duplicates(8),mismatches(8),multimappers(1) AGCACCACCGGGGTTGACTCCGGGGGCGCGGCGAGGAG___AGACATGAGGCTGAGCTGGTTCCGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGCCGTGGCCACGGCCACGGGGGCCGAGGGCAAAAGGAAGCTGCAGATCGGGGTCAAGAAGCGGGTGGACCACTGTCCCATCAAATCGCGCAAAGGGGATGTCCTGCACATGCACTACACG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAGCCAACCCAAGGCCCCGAGATC MRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYT|egeadap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3444 ENSG00000286264::DNAJC4 ENSG00000286264.2::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 588 TRUE 204 ENSG00000286264 ENSG00000286264.2 protein_coding + + chr11:64241095-64244132:+ chr11:64243311:+ chr11:64008567-64011604:+ chr11:64010783:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533 chr11:64233073,chr11:64233058,chr11:64233057,chr11:64233056,chr11:64233053,chr11:64233033,chr11:64233025,chr11:64233016 NA NA chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005 chr11:64000545,chr11:64000530,chr11:64000529,chr11:64000528,chr11:64000525,chr11:64000505,chr11:64000497,chr11:64000488 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none none FKBP_C(53%)| 177 63 172 2104 577 ENST00000652762.2 ENST00000321685.7 downstream upstream duplicates(51),low_entropy(5),mismatches(14) ACATGAGGCTGAGCTGGTTCCGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGCCGTGGCCACGGCCACGGGGGCCGAGGGCAAAAGGAAGCTGCAGATCGGGGTCAAGAAGCGGGTGGACCACTGTCCCATCAAATCGCGCAAAGGGGATGTCCTGCACATGCACTACACG___GGGAAGCTGGAAGATGGGACAGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTGGG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3445 ENSG00000286264::DNAJC4 ENSG00000286264.2::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 588 TRUE 204 ENSG00000286264 ENSG00000286264.2 protein_coding + + chr11:64241095-64244132:+ chr11:64243497:+ chr11:64008567-64011604:+ chr11:64010969:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ NA NA NA NA NA NA NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none none FKBP_C(66%)| 2 4 172 1373 577 ENST00000652762.2 ENST00000321685.7 downstream upstream duplicates(33),mismatches(5) GGGGAAGCTGGAAGATGGGACAGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTTCTCCCTTGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTGGGG...GGATGTGTGAGGGGGAAAAGCGCAAGCTGGTGATCCCATCCGAGCTAG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAGCCAACCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3446 ENSG00000286264::DNAJC4 ENSG00000286264.2::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 588 TRUE 204 ENSG00000286264 ENSG00000286264.2 protein_coding + + chr11:64241095-64244132:+ chr11:64242558:+ chr11:64008567-64011604:+ chr11:64010030:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533 chr11:64233073,chr11:64233058,chr11:64233057,chr11:64233056,chr11:64233053,chr11:64233033,chr11:64233025,chr11:64233016 NA NA chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005 chr11:64000545,chr11:64000530,chr11:64000529,chr11:64000528,chr11:64000525,chr11:64000505,chr11:64000497,chr11:64000488 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none none FKBP_C(3%)| 2 1 100 2167 577 ENST00000652762.2 ENST00000321685.7 downstream upstream duplicates(8),mismatches(7),multimappers(1) AGCACCACCGGGGTTGACTCCGGGGGCGCGGCGAGGAG___AGACATGAGGCTGAGCTGGTTCCGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGCCGTGGCCACGGCCACGGGGGCCGAGGGCAAAAGGAAGCTGCAGATCGGGGTCAAGAAGCGGGTGGACCACTGTCCCATCAAATCGCGCAAAGGGGATGTCCTGCACATGCACTACACG|GAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAG___GGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAGGGCAGCGGCAGCCGCCACCATCCGAGCCAACCCAAGGCCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3448 ENSG00000284292::MYH16 ENSG00000284292.1::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 589 TRUE 205 ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99333417:+ chr7:98923502-98992276:+ chr7:98931040:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 87 76 220 1827 283 ENST00000638617.1 ENST00000452010.2 downstream upstream duplicates(38),low_entropy(1),mismatches(20),multimappers(6) CCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GAGGACCAGGCCAACCAGACCTTGGCTCGATACAGGAAGACGGTGCATGAGCTGGATGACGCTGAGGACCGGGCTGGCATGGCAGAGACTGCCCTAAACAAGCTGCGCACCAGACACCGCGTGGCCGGCAAGGGCATCACCTCTGTGGAGATCATCCAGGTGTCCAAGACAGGCACCTCGAAAACCCTTTCTGAGGAGTGAGGCCCTCCGTGTCCTAGGCCACAACTG___GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGG MSLHQFLLEPITCHAWNRDRT|rgpgqpdlgsiqedga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3449 ENSG00000284292::MYH16 ENSG00000284292.1::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 589 TRUE 205 ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99335484:+ chr7:98923502-98992276:+ chr7:98933107:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 4 1 222 18 283 ENST00000441989.6 ENST00000452010.2 downstream upstream duplicates(22),mismatches(14),multimappers(6) CCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC___GACCAGTCTGTCTTGATTACTATAGCTTGGTG|GAGGACCAGGCCAACCAGACCTTGGCTCGATACAGGAAGACGGTGCATGAGCTGGATGACGCTGAGGACCGGGCTGGCATGGCAGAGACTGCCCTAAACAAGCTGCGCACCAGACACCGCGTGGCCGGCAAGGGCATCACCTCTGTGGAGATCATCCAGGTGTCCAAGACAGGCACCTCGAAAACCCTTTCTGAGGAGTGAGGCCCTCCGTGTCCTAGGCCACAACTG___GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAA MSLHQFLLEPITCHAWNRDRTRPVCLDYYSLV|edqanqtlaryrktvhelddaedragmaetalnklrtrhrvagkgitsveiiqvsktgtsktlsee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3450 ENSG00000284292::MYH16 ENSG00000284292.1::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 589 TRUE 205 ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99333417:+ chr7:98923502-98992276:+ chr7:98931040:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99310739:+ chr7:98836452-98908753:+ chr7:98908362:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 37 1827 344 ENST00000638617.1 ENST00000452010.2 downstream upstream duplicates(1),mismatches(6) CCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGGGTCTGTCCTGAGAATGTTTACTATGCAAAAGAAAGTGCAAGCCAGGAAGAGACAGGTGGTGAAGAATAAAGAGCGCTATGGTGGAAAATGAGCTTGAGAATGTAAAACCCGCCATTAGAGGAATGAAAATGAGTGGGGCTTCTCTGGAACGGCAGTAAGCATTTGGATGACAGTAATGATGGATCTGTTTCAGTTGAGTTCC MSLHQFLLEPITCHAWNRDRT|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3451 ENSG00000284292::MYH16 ENSG00000284292.1::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 589 TRUE 205 ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99326004:+ chr7:98923502-98992276:+ chr7:98923627:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 2 4 4 2773 283 ENST00000638617.1 ENST00000452010.2 downstream upstream none GGGCTTCCGTCCTCCGCCCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG|GAGGACCAGGCCAACCAGACCTTGGCTCGATACAGGAAGACGGTGCATGAGCTGGATGACGCTGAGGACCGGGCTGGCATGGCAGAGACTGCCCTAAACAAGCTGCGCACCAGACACCGCGTGGCCGGCAAGGGCATCACCTCTGTGGAGATCATCCAGGTGTCCAAGACAGGCACCTCGAAAACCCTTTCTGAGGAGTGAGGCCCTCCGTGTCCTAGGCCACAACTG___GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGGGTCTGTCCTGAGAATGTTTACTATGCAAAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3452 ARPC1A::MYH16 ENSG00000241685.10::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 590 TRUE 206 ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 86 76 220 1827 283 ENST00000262942.10 ENST00000452010.2 downstream upstream duplicates(38),low_entropy(1),mismatches(20),multimappers(6) CCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GAGGACCAGGCCAACCAGACCTTGGCTCGATACAGGAAGACGGTGCATGAGCTGGATGACGCTGAGGACCGGGCTGGCATGGCAGAGACTGCCCTAAACAAGCTGCGCACCAGACACCGCGTGGCCGGCAAGGGCATCACCTCTGTGGAGATCATCCAGGTGTCCAAGACAGGCACCTCGAAAACCCTTTCTGAGGAGTGAGGCCCTCCGTGTCCTAGGCCACAACTG___GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGG MSLHQFLLEPITCHAWNRDRT|rgpgqpdlgsiqedga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3453 ARPC1A::MYH16 ENSG00000241685.10::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 590 TRUE 206 ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99310739:+ chr7:98836452-98908753:+ chr7:98908362:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 37 1827 344 ENST00000262942.10 ENST00000452010.2 downstream upstream duplicates(1),mismatches(6) CCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGGGTCTGTCCTGAGAATGTTTACTATGCAAAAGAAAGTGCAAGCCAGGAAGAGACAGGTGGTGAAGAATAAAGAGCGCTATGGTGGAAAATGAGCTTGAGAATGTAAAACCCGCCATTAGAGGAATGAAAATGAGTGGGGCTTCTCTGGAACGGCAGTAAGCATTTGGATGACAGTAATGATGGATCTGTTTCAGTTGAGTTCC MSLHQFLLEPITCHAWNRDRT|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3454 ARPC1A::MYH16 ENSG00000241685.10::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 590 TRUE 206 ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99326004:+ chr7:98923521-98963885:+ chr7:98923627:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 2 4 4 2773 283 ENST00000262942.10 ENST00000452010.2 downstream upstream none GGGCTTCCGTCCTCCGCCCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG|GAGGACCAGGCCAACCAGACCTTGGCTCGATACAGGAAGACGGTGCATGAGCTGGATGACGCTGAGGACCGGGCTGGCATGGCAGAGACTGCCCTAAACAAGCTGCGCACCAGACACCGCGTGGCCGGCAAGGGCATCACCTCTGTGGAGATCATCCAGGTGTCCAAGACAGGCACCTCGAAAACCCTTTCTGAGGAGTGAGGCCCTCCGTGTCCTAGGCCACAACTG___GGTAATACAGATCTCAACTGCAGTCCATTCAGAGGGAGAAAATATGAAAATGGAAAACTGGGTCTGTCCTGAGAATGTTTACTATGCAAAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3455 ZNF704::ESRP1 ENSG00000164684.13::ENSG00000104413.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80670503:- chr8:81540686-81787016:- chr8:81582738:- ESRP1 ENSG00000104413.18 protein_coding + - chr8:94641074-94707466:+ chr8:94647544:- chr8:95653302-95719694:+ chr8:95659772:- chr8:80669565,chr8:80669567 chr8:94650112,chr8:94650116 NA NA chr8:81581800,chr8:81581802 chr8:95662340,chr8:95662344 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 84 62 139 494 195 ENST00000327835.7 unknown upstream downstream duplicates(26),mismappers(1),mismatches(11),multimappers(1) CGCAGCCAGACGACGGCATCGACGAGGCGGAGGCCAGCAACCTGCTCTTCGACGAGCCCATTCCCAGGAAAAGAAAG___AATTCCATGAAGGTGATGTTCAAATGCCTCTGGAAAAACTGTGGGAAGGTGCTGAGCACTGCAGCAGGTATCCAGAAACACATCCGAACCATCCATCTGGG|AAAAGGTGGCTGGCTACCTGCAAGCCAGGAAGAGCCATCACCAGAACCTGACCATGCTGACACCCTGATCTTGGACATCCCAGCCTCCAGAACTGTGAGAAAGTAAATTTCTTTTGTTTAAGCTCCGTGGTCTATGcTATTTGTTATGGAAGCTTGAGCTGTCTAATACAACATTCAACCCAACAGAAAAACCAGTGAGAATTTTTCTGGTGTACTAACCTTTTTAACAAAATTCTTGTAAGAATTCTG QPDDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLg|kggwlpasqeepspepdhadtlildipasrtvrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3456 CD47::IFT57 ENSG00000196776.17::ENSG00000114446.5 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CD47 ENSG00000196776.17 protein_coding - - chr3:108043091-108091862:- chr3:108047138:- chr3:107761938-107810709:- chr3:107765985:- IFT57 ENSG00000114446.5 protein_coding - - chr3:108160812-108222435:- chr3:108167864:- chr3:107879659-107941282:- chr3:107886711:- chr3:108044869,chr3:108044871 chr3:108168257,chr3:108168256 NA NA chr3:107763716,chr3:107763718 chr3:107887104,chr3:107887103 NA NA sense sense stop-codon 3'UTR CDS/splice-site duplication high none CD47_immunoglobulin-like_domain(100%),CD47_transmembrane_region(100%)|Intra-flagellar_transport_protein_57__(39%) CD47(100%),V-set_CD47(100%)|IFT57(8%) 42 93 85 687 454 ENST00000361309.6 ENST00000264538.4 upstream downstream duplicates(19),mismatches(4) AGGAACCCCTTAATG___CATTCAAAGAATCAAAAGGAATGATGAATGATG___AATAACTGAAGTGAAGTGATGGACTCCGATTTGGAGAGTAGTAAGACGTGAAAGGAATACACTTGTGTTTAAGCACCATGGCCTTGATGATTCACTGTTGGGGAGAAGAAACAAGAAAAGTAACTGGTTGTCACCTATGAGACCCTTACGTGATT|GATTGGAGAATCCATGTTGACCAAATGCACCAGCACAGAAGTGGAATTGAATCTGCTCTAAAGGAGACCAAG___GGATTTTTGGACAAACTCCATAATGAAATTACTAGGACTTTGGAAAAGATCAGCAGCCGAGAAAAGTACATCAACAATCAGCTTGAGAATTTGGTTCAAGAATATCGTGCAGCTCAAGCCCAGCTGAGTGAG___GCAAAGGAGCGATACCAGCAGGGAAATGGAGGAGTGACGGAAAGAACCAGACTCCTCTCTGAG___GTTATGGAAGAATTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3457 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895793:- chr12:23682438-24715478:- chr12:24048727:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25203920:+ chr12:25348150-25362579:+ chr12:25356854:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Complex_1_protein_(LYR_family)(100%) |Complex1_LYR(100%),Complex1_LYR_2(100%) 33 15 160 281 3774 ENST00000545921.5 ENST00000557540.7 upstream upstream duplicates(17),mismappers(2),mismatches(10) CTGCGGTGCACGGGGCAGCCACCATCTCTGCATGCATGTCTGT___...ATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATG|GTATGTTATGCATAAAAGTGGATAATTTACATGATAAATGAAAATGGCCAATTCTTTAAGAGGAGAAGTACTAAAACTTTATAAAAAT___CTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGACTATTTTAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAAGAATCCAGAGAAGATCAAAGAACTTATTGCACAGG mltdpdlpqeferMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTM|vcya* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3458 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895898:- chr12:23682438-24715478:- chr12:24048832:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25203920:+ chr12:25348150-25362579:+ chr12:25356854:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Complex_1_protein_(LYR_family)(100%) |Complex1_LYR(100%),Complex1_LYR_2(100%) 23 19 129 670 3774 ENST00000537393.5 ENST00000557540.7 upstream upstream duplicates(10),mismappers(1),mismatches(8) CTGCGGTGCACGGGGCAGCCACCATCTCTGCATGCATGTCTGT___...GCTGCTGTGACAAAGGGAAATTGTGCTTTTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCAT|GTATGTTATGCATAAAAGTGGATAATTTACATGATAAATGAAAATGGCCAATTCTTTAAGAGGAGAAGTACTAAAACTTTATAAAAAT___CTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGACTATTTTAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAAGAATCCAGAGAAGATCAAAGAACTTATTGCACAGGGCGAATTTGTAATGAAAGAGCTAGAAGCTTTGTACTTCCTTAGGAAATACAGAGCTATGAAACAACGCTATTA MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLH|vcya* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3459 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895898:- chr12:23682438-24715478:- chr12:24048832:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25203725:+ chr12:25348150-25362579:+ chr12:25356659:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none |Complex_1_protein_(LYR_family)(100%) |Complex1_LYR(100%),Complex1_LYR_2(100%) 1 1 133 670 117 ENST00000537393.5 ENST00000556927.6 upstream upstream duplicates(9),mismatches(6) CTGCGGTGCACGGGGCAGCCACCATCTCTGCATGCATGTCTGT___...GCTGCTGTGACAAAGGGAAATTGTGCTTTTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCAT|GAAAACGTCAATTATGACAGCAGGTAATTTTATCGGAAGTGTTTATAACTATATCCCAGTACGTGGAACGAAAAAGTTATCAAGAAATATTTATTG?AT___GTATGTTATGCATAAAAGTGGATAATTTACATGATAAATGAAAATGGCCAATTCTTTAAGAGGAGAAGTACTAAAACTTTATAAAAAT___CTGCTGTATCTTGGAC MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLH|envnydsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3460 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895793:- chr12:23682438-24715478:- chr12:24048727:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25204091:+ chr12:25348150-25362579:+ chr12:25357025:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Complex_1_protein_(LYR_family)(85%) |Complex1_LYR(56%),Complex1_LYR_2(59%) 2 1 107 281 2287 ENST00000451604.7 ENST00000557540.7 upstream upstream duplicates(7),mismatches(6) CACGGGGCAGCCACCATCTCTGCATGCATGTCTGT___...GCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATG|CTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGACTATTTTAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAAGAATCCAGAGAAGATCAAAGAACTTATTGCACAGGGCGAATTTGTAATGAAAGAGCTAGAAGCTTTGTACTTCCTTAGGAAATACAGAGCTATGAAACAACGCTATTATTCAGATACCAACAAAACTAATTGATCATTACTACTTTAATTTAGCTATC LTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTM|LLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQRYYSDTNKTN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3461 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895898:- chr12:23682438-24715478:- chr12:24048832:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25204091:+ chr12:25348150-25362579:+ chr12:25357025:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Complex_1_protein_(LYR_family)(85%) |Complex1_LYR(56%),Complex1_LYR_2(59%) 1 0 90 670 2287 ENST00000537393.5 ENST00000557540.7 upstream upstream duplicates(6),mismatches(5) CGGTGCACGGGGCAGCCACCATCTCTGCATGCATGTCTGT___...GGTGGCTGCTGTGACAAAGGGAAATTGTGCTTTTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCAT|CTGCTGTATCTTGGACGAGACTATCCAAAAGGAGCAGACTATTTTAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAAGAATCCAGAGAAGATCAAAGAACTTATTGCACAGGGCGAATTTGTAATGAAAGAGCTAGAAGCTTTGTACTTCCTTAGGAAATACAGAGCTATGAAACAACGCTATTATTCAGATACCAACAAAACTAATTGATCATTACTACTTTAATTTAGCTATCAGT MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLH|LLYLGRDYPKGADYFKKRLKNIFLKNKDVKNPEKIKELIAQGEFVMKELEALYFLRKYRAMKQRYYSDTNKTN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3469 RHBDF2::TEX2 ENSG00000129667.13::ENSG00000136478.9 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 298 TRUE 593 TRUE 208 RHBDF2 ENSG00000129667.13 protein_coding - - chr17:76470891-76501790:- chr17:76481375:- chr17:74466973-74497872:- chr17:74477457:- TEX2 ENSG00000136478.9 protein_coding - - chr17:64147227-64263260:- chr17:64160933:- chr17:62224587-62340620:- chr17:62238293:- chr17:76479104,chr17:76479107 chr17:64163567,chr17:64163567 NA NA chr17:74475186,chr17:74475189 chr17:62240927,chr17:62240927 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 16 40 36 444 182 ENST00000591885.5 ENST00000584379.6 upstream downstream duplicates(7),mismappers(1),mismatches(3) GCCCTTCACAGCAAGACCCAGGAAGCCGCGGGCAAACTCAGACTCGAAG___CCCTCCCGCCTCCTGCCCACAATGGCCTCTGCTGACAAGAATGGCGGGAGCGTGTCCTCTGTGTCCAGCAGCCGCCTGCAGAGCCGGAAGCCACCCAACCTCTCCATCACCATCCCGCCACCCGAGAAAGAGACCCAGGCCCCTGGCGAGCAGGACAGCATGCTGCCTGAG|GACTCTGGATTGATTTGGAAATGTCCTACAATGGGTCCTTTCTGATGACTCTCGAGACCAAAATGAATTTGACCAAACTAGGTAAAGAGCCTCTTGTTGAAGCCCTGAAGGTTGGAGAAATTGGCAAAGAAGG___TTGCAGGCCCCGGGCATTCTGTCTGGCGGACAGCGATGAGGAATCCTCCAGCGCTGGCTCCT MASADKNGGSVSSVSSSRLQSRKPPNLSITIPPPEKETQAPGEQDSMLPE|dsgliwkcptmgpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3470 RHBDF2::TEX2 ENSG00000129667.13::ENSG00000136478.9 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 593 TRUE 208 RHBDF2 ENSG00000129667.13 protein_coding - - chr17:76470891-76501790:- chr17:76481375:- chr17:74466973-74497872:- chr17:74477457:- TEX2 ENSG00000136478.9 protein_coding - - chr17:64147227-64263260:- chr17:64154967:- chr17:62224587-62340620:- chr17:62232327:- chr17:76479104,chr17:76479107 chr17:64163567,chr17:64163567 NA NA chr17:74475186,chr17:74475189 chr17:62240927,chr17:62240927 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 1 1 9 444 198 ENST00000591885.5 ENST00000584379.6 upstream downstream duplicates(1),mismatches(1) CGGAGCATCTGTACAGAGCAAGGAGAAGACAAGAACATGCTCTAAAGCCCTTCACAGCAAGACCCAGGAAGCCGCGGGCAAACTCAGACTCGAAG___CCCTCCCGCCTCCTGCCCACAATGGCCTCTGCTGACAAGAATGGCGGGAGCGTGTCCTCTGTGTCCAGCAGCCGCCTGCAGAGCCGGAAGCCACCCAACCTCTCCATCACCATCCCGCCACCCGAGAAAGAGACCCAGGCCCCTGGCGAGCAGGACAGCATGCTGCCTGAG|TTGCAGGCCCCGGGCATTCTGTCTGGCGGACAGCGATGAGGAATCCTCCAGCGCTGGCTCCTCCGAGGAAGACGATGCCCCAGAGCCCAGCGGGGGAGACAAACAGCTCCTCCCAGGGGCTGAAGG___GTACGTTGGAGGTCATCGAACAAGTAAGATTATGAGGTTTGTTGATAAAATTACCAAGTCAAAATATTTCCAAAAAGCAACAGAGACAGAGTTTATTAAAA MASADKNGGSVSSVSSSRLQSRKPPNLSITIPPPEKETQAPGEQDSMLPE|lqapgilsggqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3471 ACSS1::BCAT1 ENSG00000154930.15::ENSG00000060982.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 594 TRUE 209 ACSS1 ENSG00000154930.15 protein_coding - - chr20:25006230-25058980:- chr20:25013536:- chr20:24986866-25039616:- chr20:24994172:- BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24864312:- chr12:24962958-25102035:- chr12:25017246:- chr20:25013129,chr20:25013133,chr20:25013131 chr12:24864832,chr12:24864833,chr12:24865185 NA NA chr20:24993765,chr20:24993769,chr20:24993767 chr12:25017766,chr12:25017767,chr12:25018119 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none AMP-binding_enzyme(93%),Acetyl-coenzyme_A_synthetase_N-terminus(100%)|Amino-transferase_class_IV(69%) ACAS_N(100%),AMP-binding(83%)|Aminotran_4(64%) 28 11 74 1895 20 ENST00000432802.6 unknown upstream downstream duplicates(9),mismatches(11),multimappers(1) CATCAACTGTGAGGCCTGGGAGTGGCTTCACAGGGTGGTGGGGGACAGCAGGTGCACGCTGGTGGACACCTGGTGGCAGACAG___AAACAGGTGGCATCTGCATCGCACCACGGCCCTCGGAAGAAGGGGCGGAAATCCTCCCTGCCATGGCGATGAGGCCCTTCTTTGGCATCGTCCCCGTCCTCATGGATGAGAAG___GGCAGCGTCGTGGAGGGCAGCAACGTCTCCGGGGCCCTGTGCATCTCCCAGGCCTGGCCGGGCATGGCCAGGACCATCTATGGCGACCACCAGCGATTTGTGGACGCCTACTTCAAGGCCTACCCAG|GGCCAGCACAGTGGGAGGCCTAGTCAACTGAGCCAAACTGGATATAACCACAAGGTCAAAGGCAGGAGCCAGTGAGGAGATCTTGGTTTTGAGGTCATTCCTGGTGCGATAATAACCATCCTGTAGCATTTTCTTGTCACTTAGAGAAGGCATTAGCAAACTTTTTTTGTAATGGTCTTAATAGTAAATATTTTTGACTTTGTAGGCTATATAGCTACTCACCTCTGCTTTTATAGTACAAAAGC INCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYP|gpaqwea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3472 ACSS1::BCAT1 ENSG00000154930.15::ENSG00000060982.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 299 TRUE 594 TRUE 209 ACSS1 ENSG00000154930.15 protein_coding - - chr20:25006230-25058980:- chr20:25013536:- chr20:24986866-25039616:- chr20:24994172:- BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24849949:- chr12:24962958-25102035:- chr12:25002883:- chr20:25013129,chr20:25013133,chr20:25013131 chr12:24864832,chr12:24864833,chr12:24865185 NA NA chr20:24993765,chr20:24993769,chr20:24993767 chr12:25017766,chr12:25017767,chr12:25018119 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none AMP-binding_enzyme(93%),Acetyl-coenzyme_A_synthetase_N-terminus(100%)|Amino-transferase_class_IV(69%) ACAS_N(100%),AMP-binding(83%)|Aminotran_4(35%) 17 10 40 1895 53 ENST00000432802.6 ENST00000261192.12 upstream downstream duplicates(5),mismatches(5),multimappers(2) GTGAAGAAGTATGATCGCTCCTCCCTGCGGACCCTGGGGTCAG___TGGGAGAGCCCATCAACTGTGAGGCCTGGGAGTGGCTTCACAGGGTGGTGGGGGACAGCAGGTGCACGCTGGTGGACACCTGGTGGCAGACAG___AAACAGGTGGCATCTGCATCGCACCACGGCCCTCGGAAGAAGGGGCGGAAATCCTCCCTGCCATGGCGATGAGGCCCTTCTTTGGCATCGTCCCCGTCCTCATGGATGAGAAG___GGCAGCGTCGTGGAGGGCAGCAACGTCTCCGGGGCCCTGTGCATCTCCCAGGCCTGGCCGGGCATGGCCAGGACCATCTATGGCGACCACCAGCGATTTGTGGACGCCTACTTCAAGGCCTACCCAG|CCTTCTCTTGGAGTCAAGAAGCCTACCAAAGCCCTGCTCTTTGTACTCTTGAGCCCAGTGGGACCTTATTTTTCAAGTGGAACCTTTAATCCAGTGTCCCTGTGGGCCAATCCCAAGTATGTAAGAGCCTGGAAAGGTGGAACTGGGGACTGCAAGATGGGAGG___GAATTACGGCTCATCTCTTTTTGCCCAATGTGAAGCAGTAGATAATGGGTGTCAGCAGGTCCTGTGGCT VKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYP|afswsqeayqspalctlepsgtlffkwnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3473 ACSS1::BCAT1 ENSG00000154930.15::ENSG00000060982.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 300 TRUE 594 TRUE 209 ACSS1 ENSG00000154930.15 protein_coding - - chr20:25006230-25058980:- chr20:25013961:- chr20:24986866-25039616:- chr20:24994597:- BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24849949:- chr12:24962958-25102035:- chr12:25002883:- chr20:25013129,chr20:25013133,chr20:25013131 chr12:24864832,chr12:24864833,chr12:24865185 NA NA chr20:24993765,chr20:24993769,chr20:24993767 chr12:25017766,chr12:25017767,chr12:25018119 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none AMP-binding_enzyme(83%),Acetyl-coenzyme_A_synthetase_N-terminus(100%)|Amino-transferase_class_IV(69%) ACAS_N(100%),AMP-binding(82%)|Aminotran_4(35%) 7 10 24 1848 53 ENST00000432802.6 ENST00000261192.12 upstream downstream duplicates(4),mismatches(3),multimappers(1) ATACGGTGATGCCTGGGTGAAGAAGTATGATCGCTCCTCCCTGCGGACCCTGGGGTCAG___TGGGAGAGCCCATCAACTGTGAGGCCTGGGAGTGGCTTCACAGGGTGGTGGGGGACAGCAGGTGCACGCTGGTGGACACCTGGTGGCAGACAG___AAACAGGTGGCATCTGCATCGCACCACGGCCCTCGGAAGAAGGGGCGGAAATCCTCCCTGCCATGGCGATGAGGCCCTTCTTTGGCATCGTCCCCGTCCTCATGGATGAGAAG|CCTTCTCTTGGAGTCAAGAAGCCTACCAAAGCCCTGCTCTTTGTACTCTTGAGCCCAGTGGGACCTTATTTTTCAAGTGGAACCTTTAATCCAGTGTCCCTGTGGGCCAATCCCAAGTATGTAAGAGCCTGGAAAGGTGGAACTGGGGACTGCAAGATGGGAGG___GAATTACGGCTCATCTCTTTTTGCCCAATGTGAAGCAGTAGATAATGGGTGTCAGCAGG YGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEK|PSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3475 SUMO2::FAM222B ENSG00000188612.12::ENSG00000173065.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 302 TRUE 595 FALSE NA SUMO2 ENSG00000188612.12 protein_coding - - chr17:75165586-75182959:- chr17:75182814:- chr17:73161681-73179054:- chr17:73178909:- FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28759764:- chr17:27082998-27182250:- chr17:27086782:- chr17:75182151,chr17:75182151,chr17:75182153 chr17:28759912,chr17:28759913,chr17:28759911 NA NA chr17:73178246,chr17:73178246,chr17:73178248 chr17:27086930,chr17:27086931,chr17:27086929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Protein_family_of_FAM222A(92%) |FAM222A(17%) 19 26 29 5328 471 ENST00000420826.7 ENST00000583953.6 upstream downstream duplicates(7),mismatches(2) CTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGCTTGTGTGCTCGTTTGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACTCCGGCGCTCGCCATGGCCGACGAAAAGCCCAAG|TGTGAAGGTTCCCCAGCGGAAACACGTTCGTCGTACTGTGAACGGCCTCGACACATCAGCCCAGCGCTACAGCCCCTACCCGACACAGGCTGCCACCAAGGCAGGCCTGCTTGCCATTGTCAAAGTGCCAGCCAAAAGCATACTCAAGGACTTTGACGGCACCCGAGCCCGGTTGCTCCCTGAGGCCATCATGAACCCCCCAGTGGCACCCTATGCTACTGTGGCACCCAGCACTTTAGCCCACCCCCAGGCCCAGGCTCTGGCCCGCCAGCAGGCCCTGCAGCATGCACAGACCCTGGCC MADEKPK|cegspaetrssycerprhispalqplpdtgchqgrpachcqsasqkhtqgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3480 KRAS::SOX5 ENSG00000133703.14::ENSG00000134532.20 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 303 FALSE NA FALSE NA KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25245274:- chr12:25358180-25403870:- chr12:25398208:- SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23846193:- chr12:23682438-24715478:- chr12:23999127:- chr12:25212906 chr12:23893216 NA NA chr12:25365840 chr12:24046150 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Ras_family(18%)|HMG_(high_mobility_group)_box(100%) Arf(0%),MMR_HSR1(0%),Ras(0%),Roc(0%)|HMG_box(100%),HMG_box_2(100%) 14 23 42 4023 280 ENST00000256078.10 ENST00000646273.1 upstream downstream duplicates(10),mismatches(4) CGGCGGCGAAGGTGGCGGCGGCTCGGCCAGTACTCCCGGCCCCCGCCATTTCGGACTGGGAGCGAGCGCGGCGCAGGCACTGAAGGCGGCGGCGGGGCCAGAGGCTCAGCGGCTCCCAGGTGCGGGAGAGAG___GCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATACAGCTAATTCAGAATCATTTTGTGGACGAATATGATCCAACAATAGAG|GAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAG___AAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAG MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE|EVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 3481 CNN2::ILF3 ENSG00000064666.15::ENSG00000129351.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 596 TRUE 210 CNN2 ENSG00000064666.15 protein_coding + + chr19:1026586-1039068:+ chr19:1036562:+ chr19:1026585-1039067:+ chr19:1036561:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10670516:+ chr19:10764980-10803076:+ chr19:10781192:+ chr19:1037130,chr19:1037131 chr19:10661727,chr19:10661725 NA NA chr19:1037129,chr19:1037130 chr19:10772403,chr19:10772401 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Calponin_family_repeat(51%),Calponin_homology_(CH)_domain(100%)|DZF_domain(100%),Double-stranded_RNA_binding_motif(100%) CH(100%),Calponin(96%)|DZF(100%),dsrm(100%) 9 51 16 623 1478 ENST00000263097.9 ENST00000588657.6 downstream upstream duplicates(5),mismatches(1) TCGACGATGCCACCATGAAGGCTGGCCAGTGCGTCATCGGGCTGCAG___ATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACTGCCTACGGCACGAGAAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACAAGTGcGCCAGCCAG|AGTTGAAGTATTGATAACACCAAGGAACTCTATCACAATTTGAAAAGATAAGCAAAAGTTTGATTTCCAGACACTACAGAAGAAGTAAAAATG___CGTCCAATGCGAATTTTTGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGCAGCGAGCAGGCAGAGTCCGATAACATGGATGTGCCCCCAGAGGACGAC DDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQ|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3482 CNN2::ILF3 ENSG00000064666.15::ENSG00000129351.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 596 TRUE 210 CNN2 ENSG00000064666.15 protein_coding + + chr19:1026586-1039068:+ chr19:1036562:+ chr19:1026585-1039067:+ chr19:1036561:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10666492:+ chr19:10764980-10803076:+ chr19:10777168:+ chr19:1037130,chr19:1037131 chr19:10661727,chr19:10661725 NA NA chr19:1037129,chr19:1037130 chr19:10772403,chr19:10772401 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Calponin_family_repeat(51%),Calponin_homology_(CH)_domain(100%)|DZF_domain(100%),Double-stranded_RNA_binding_motif(100%) CH(100%),Calponin(96%)|DZF(100%),dsrm(100%) 0 2 16 623 26 ENST00000263097.9 ENST00000589600.5 downstream upstream duplicates(2) AAGCAGGAGCGGAATTTCGACGATGCCACCATGAAGGCTGGCCAGTGCGTCATCGGGCTGCAG___ATGGGCACCAACAAATGCGCCAGCCAGTCGGGCATGACTGCCTACGGCACGAGAAGGCATCTCTATGACCCCAAGAACCATATCCTGCCCCCCATGGACCACTCGACCATCAGCCTCCAGATGGGCACGAACAAGTGcGCCAGCCAG|CCAGTGGGACACCTCACAAGTCAGCTCCGATGTCCTCAGGACAAGACTGCTATAGTCACCAGTGCTTTGTTGCTTTCTGGCGCTCCGGTAGGATCCAGGCTCACTTGGTATATCCCCTGCTGCAGATTACGG KQERNFDDATMKAGQCVIGLQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQ|pvghltsqlrcpqdktaivtsalllsgapvgsrltwyipccrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3483 CNN2::ILF3 ENSG00000064666.15::ENSG00000129351.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 596 TRUE 210 CNN2 ENSG00000064666.15 protein_coding + + chr19:1026586-1039068:+ chr19:1032663:+ chr19:1026585-1039067:+ chr19:1032662:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10670516:+ chr19:10764980-10803076:+ chr19:10781192:+ chr19:1037130,chr19:1037131 chr19:10661727,chr19:10661725 NA NA chr19:1037129,chr19:1037130 chr19:10772403,chr19:10772401 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion medium none Calponin_homology_(CH)_domain(88%)|DZF_domain(100%),Double-stranded_RNA_binding_motif(100%) CH(31%),Calponin(58%)|DZF(100%),dsrm(100%) 1 0 3 906 1478 ENST00000348419.7 ENST00000588657.6 downstream upstream none CTCCACGCAGTTCAACAAGGGCCCCTCGTACGGGCTGTCGGCCGAGGTCAAGAACCGG___CTCCTGTCCAAATATGACCCCCAGAAGGAGGCAGAGCTCCGCA...GAGTGGGAACATGACGCAG|AGTTGAAGTATTGATAACACCAAGGAACTCTATCACAATTTGAAAAGATAAGCAAAAGTTTGATTTCCAGACACTACAGAAGAAGTAAAAATG___CGTCCAATGCGAATTTTTGgGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCC SGNMTQ|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3486 TGFB1::RBPMS ENSG00000105329.11::ENSG00000157110.16 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 306 TRUE 598 TRUE 211 TGFB1 ENSG00000105329.11 protein_coding - - chr19:41301587-41353922:- chr19:41341883:- chr19:41807492-41859827:- chr19:41847788:- RBPMS ENSG00000157110.16 protein_coding + + chr8:30384511-30572256:+ chr8:30504286:+ chr8:30242027-30429773:+ chr8:30361803:+ chr19:41335391,chr19:41335393 chr8:30493640,chr8:30493638 NA NA chr19:41841296,chr19:41841298 chr8:30351157,chr8:30351155 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none TGF-beta_propeptide(100%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(8%) TGFb_propeptide(100%)|RRM_1(0%) 11 14 27 170 130 ENST00000221930.6 ENST00000320203.8 upstream upstream duplicates(5),mismatches(1) GGGAAATTGAGGGCTTTCGCCTTAGCGCCCACTGCTCCTGTGACAGCAGGGATAACACACTGCAAGTGGACATCAACG___GGTTCACTACCGGCCGCCGAGGTGACCTGGCCACCATTCATGGCATGAACCGGCCTTTCCTGCTTCTCATGGCCACCCCGCTGGAGAGGGCCCAGCATCTGCAAAGCTCCCGGCACCGCCGAGCCCTGGACACCAACTATTGCTTCAG|GGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCAT___ATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAG EIEGFRLSAHCSCDSRDNTLQVDINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQHLQSSRHRRALDTNYCFr|asasilkfrkhyd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3487 TGFB1::RBPMS ENSG00000105329.11::ENSG00000157110.16 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 598 TRUE 211 TGFB1 ENSG00000105329.11 protein_coding - - chr19:41301587-41353922:- chr19:41342170:- chr19:41807492-41859827:- chr19:41848075:- RBPMS ENSG00000157110.16 protein_coding + + chr8:30384511-30572256:+ chr8:30504286:+ chr8:30242027-30429773:+ chr8:30361803:+ chr19:41335391,chr19:41335393 chr8:30493640,chr8:30493638 NA NA chr19:41841296,chr19:41841298 chr8:30351157,chr8:30351155 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none TGF-beta_propeptide(90%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(8%) TGFb_propeptide(98%)|RRM_1(0%) 0 1 6 247 130 ENST00000221930.6 ENST00000320203.8 upstream upstream none AGCAACCGGCTGCTGGCACCCAGCGACTCGCCAGAGTGGTTATCTTTTGATGTCACCGGAGTTGTGCGGCAGTGGTTGAGCCGTGGAG___GGGAAATTGAGGGCTTTCGCCTTAGCGCCCACTGCTCCTGTGACAGCAGGGATAACACACTGCAAGTGGACATCAACG|GGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCAT___ATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGG...TGATACCCATCGGCCAGGACTTCACTCACTTCACCACCAGTCCTTTCAAACTTGGTTCCCGAGAGCACACCATACAACTAACACCTATCCAGCTAACAGAT SNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCDSRDNTLQVDIN|ghplrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3489 SSH2::ASIC2 ENSG00000141298.19::ENSG00000108684.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29635968:- chr17:27952956-28257294:- chr17:27962986:- ASIC2 ENSG00000108684.15 protein_coding - + chr17:33013087-34174964:- chr17:33152149:+ chr17:31340105-32501983:- chr17:31479167:+ chr17:29634293 chr17:33122105 NA NA chr17:27961311 chr17:31449123 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none DEK_C_terminal_domain(100%),Dual_specificity_phosphatase__catalytic_domain(100%)| DEK_C(100%),DSPc(100%)| 13 4 22 68 36 ENST00000540801.6 unknown upstream upstream duplicates(2),mismatches(1) CCCAACCCAGTTGCCAGACTGAAATCTCAGATTTCAGTACAGATCGCATTGACTTTTTTAGTGCCCTAGAGAAGTTTGTGGAGCTCTCCCAAGAAACCCGGTCACGATCTTTTTCCCATTCAAGGATGGAGGAACTGGGTGGAGGAAGGAATGAGAGCTGTCGACTGTCAGTGGTAGAAGTAGCCCCTTCCAAAGTGACAGCTGATGACCAGAGAAGCAGCTCTTTGAGTAATACTCCCCATGCATCAGAAGAATCTTCAATGGATGAGGAACAGTCAAAG|ATGAGGAACCAAAGTTCAAGGAGGTTCAACGTCTTACAGATTTGGTGGTGCACTTGCTCTTCCCACTGCCCAGTGAAGCGCTACTCGATCATACTAGACACAATGTGGTTGGTCTATGGGAGGGAGTATCAGGAAGCATGAGGAGCCCACACTTCTACAAAGAGTCGAGATGCCTTCACAAAGATGCCTCATGCTGCAAGGTCGTGAATGCCAAGTGCTCTAGTGTTTCAGAGGTGGAGGAGATCCCTACAGATGAGGCACCAGGAAAAGCTTC QPSCQTEISDFSTDRIDFFSALEKFVELSQETRSRSFSHSRMEELGGGRNESCRLSVVEVAPSKVTADDQRSSSLSNTPHASEESSMDEEQSK|mrnqssrrfnvlqiwwctcsshcpvkrysiildtmwlvygreyqea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3492 USP43::CA10 ENSG00000154914.17::ENSG00000154975.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9686909:+ chr17:9548015-9633004:+ chr17:9590226:+ CA10 ENSG00000154975.14 protein_coding - + chr17:51630313-52160017:- chr17:51712994:+ chr17:49707674-50237377:- chr17:49790354:+ chr17:9689955,chr17:9689948 chr17:51670092,chr17:51670090 NA NA chr17:9593272,chr17:9593265 chr17:49747452,chr17:49747450 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Ubiquitin_carboxyl-terminal_hydrolase(57%)| UCH(63%)| 5 10 16 69 29 ENST00000285199.12 unknown downstream upstream duplicates(2),mismatches(1) CCAGCGATTCTCCCTCTCTCTCCACAGTGAGAGCAAGGTGCTAATCCTCTTCTGTAACTTGGTGGGGTCAGGGCAGCAGGCTAGCAG___GTTTGGGCCACCCTTCCTGATAAGGGAAGACAGAGCTGTTTCCTGGGCCCAGCTCCAGCAGTCTATCCTCAGCAAGGTCCGCCATCTTATGAAGAGTGAGGCCCCTGTACAG|ATCCTCTTTTCTTGCCCCTGCTGGGAAGCTATCTCTGGTTCTAGAGCAGAAGGCCATCACAGAAACTCAGCCAAACAGTAAATTGGAGGTGAGGTTTTCACCAGGACCATGAAGACTTCACTTCTTCAATCGGGTAACTTCCCAAAGAAGTATTTTCCTACTTTAGAGATGTGGAAGGATTGGGAGCTGCTACTCAAGATGATCTTACACATGCACTGAATGGTTTGAGCATCATTCTTATCATTGATTAAGGGGCTGGATCAACGGCTGGACTTCAGGCATGGTCAGAAGGAAAAAGGAGCCTATAATTGGCCATTTCTTGGCTGGGTCATGACCACAGCAAGGGCATAGATGTTTAATAGGCAGTGTAAGGTTACAATTCCAAATATGCATTAACTGAACCCATCAATGATATCTAGCGGGGACAACGGGAGGACTTGAGGAC QRFSLSLHSESKVLILFCNLVGSGQQASRFGPPFLIREDRAVSWAQLQQSILSKVRHLMKSEAPVQ|ilfscpcweaisgsraeghhrnsakq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3495 ETNK1::SOX5 ENSG00000139163.16::ENSG00000134532.20 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22644022:+ chr12:22778009-22843599:+ chr12:22796956:+ SOX5 ENSG00000134532.20 protein_coding - + chr12:23529504-24562544:- chr12:23944215:+ chr12:23682438-24715478:- chr12:24097149:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site 5'UTR deletion/5'-5' high none Choline/ethanolamine_kinase(32%)| APH(0%),Choline_kinase(0%)| 11 4 13 2778 25 ENST00000266517.9 unknown downstream upstream duplicates(4),mismatches(4) TGGAGGATGTAGTCCTGGTGAGAATTTATGGCAATAAGACTGAGTTATTAGTCGATCGAGATGAGGAAGTAAAGAGTTTTCGAGTGTTGCAGGCTCATGGGTGTGCACCACAACTCTACTGTACCTTCAATAATGGACTATGCTATGAATTTATACAAGGAGAAGCACTGGATCCAAAGCATGTCTGCAACCCAGCCATTTTCAG|CCCACTGAGCAGAATGCAGCTCTACAATGAAGGCGCAAGAGCTGGGAACAACTTTGAGTCTCTGACTCCTCAGGCTGGCAAAGGGAGGGAGTACTGCTGAGGTTTTACTCCCAGGATCCAAGGGAAAAGGATACTGAATGTGGAGAAATGCAACACCCCCCTATTG EDVVLVRIYGNKTELLVDRDEEVKSFRVLQAHGCAPQLYCTFNNGLCYEFIQGEALDPKHVCNPAIFs|plsrmqlynegaragnnfesltpqagkgreyc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 3498 HGS::FLCN ENSG00000185359.14::ENSG00000154803.13 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HGS ENSG00000185359.14 protein_coding + + chr17:81683326-81703138:+ chr17:81695223:+ chr17:79650356-79670168:+ chr17:79662253:+ FLCN ENSG00000154803.13 protein_coding - + chr17:17212212-17237188:- chr17:17220426:+ chr17:17115526-17140502:- chr17:17123740:+ chr17:81695784,chr17:81695778 chr17:17220200,chr17:17220186 NA NA chr17:79662814,chr17:79662808 chr17:17123514,chr17:17123500 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none FYVE_zinc_finger(100%),VHS_domain(100%)| Arf(100%),FYVE(100%),Hrs_helical(0%),UIM(100%),VHS(100%)| 7 5 15 382 46 ENST00000679191.1 unknown downstream upstream duplicates(6),mismatches(2) TCTCAGCAGTCCCAG___CTGCCCCCCAAGAGGGACGAGACGGCCCTGCAGGAGGAGGAGGAGCTGCAGCTGGCCCTGGCGCTGTCACAGTCAGAGGCGGAGGAGAAGGAGAGGCTG___AGACAGAAGTCCACGTACACTTCGTACCCCAAGGCGGAGCCCATGCCCTCGGCCTCCTCAGCGCCCCCCGCCAGCAGCCTGTACTCTTCACCTGTG___AACTCGTCGGCGCCTCTGGCTGAGGACATCGACCCTGAG___CTCGCACGGTATCTCAACCGGAACTACTGGGAGAAGAAGCAGGAGGAGGCTCGCAAGAGCCCCACGCCATCTGCGCCCGTGCCCCTGACGGAGCCGGCTGCACAGCCTGGGGAAGGGCACGCAGCCCCCACCAACGTGGTGGAG___AACCCCCTCCCGGAGACAGACTCTCAGCCCATTCCTCCCTCTGGTGGCCCCTTTAGTGAG|ATGAAGAAATTAGTATTTGTCATTTCAACGAAACTTCATGGAGCCCTCACAAATGACAACATCTCCATTTCACATCACGAGACCCAAAGGGAAGGGTGCACGTCAGAAGCAAATCCAGGATGCGAAGCCAGGTCTGTCTGATGCCAAAGGGCAAGCCCTGAGCCCGAAACCCCATACTGCGCATGCCCAGCACACCTGCGTTTCCAGCTCTCACAAAGGCTTCGACAGACCTG SQQSQLPPKRDETALQEEEELQLALALSQSEAEEKERLRQKSTYTSYPKAEPMPSASSAPPASSLYSSPVNSSAPLAEDIDPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQPGEGHAAPTNVVENPLPETDSQPIPPSGGPFSE|mkklvfvistklhgaltndnisishhetqregctseanpgcearsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6786 chr17:81693757-81693869:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3499 SOX5::ST8SIA1 ENSG00000134532.20::ENSG00000111728.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24562338:- chr12:23682438-24715478:- chr12:24715272:- ST8SIA1 ENSG00000111728.11 protein_coding - + chr12:22063773-22437041:- chr12:22303435:+ chr12:22216707-22589975:- chr12:22456369:+ chr12:24117352,chr12:23940655,chr12:23940655,chr12:23940655,chr12:23940655,chr12:24117350 chr12:22298344,chr12:22293213,chr12:22293209,chr12:22293203,chr12:22293188,chr12:22298346 NA NA chr12:24270286,chr12:24093589,chr12:24093589,chr12:24093589,chr12:24093589,chr12:24270284 chr12:22451278,chr12:22446147,chr12:22446143,chr12:22446137,chr12:22446122,chr12:22451280 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 2 11 14 408 20 ENST00000456299.2 unknown upstream upstream duplicates(2) CGCGAGCGAGCGGGCGAGCGAGAGACGGGGGGAGAGAGAGGGACACGCGCGCGCACACACACACACACCGGCACACACGCACACACACAGACACACACACACAGAGTGAAAAAGGCGAGCCACCAAAACCCATCTCCAGTCTCCTCCCGGGGGCCCCCAGCCCGCCTCTGTGCCACTTTGCATCCCACGCCGGAGGAGGCATTAACGAGACCGG|GGAAGATGAATTTGAGATTTTTCCTGCTTCTAGGATGGTAGAGAGCAGTCTTCAGCCTGAGACCCATTCCTAG___GTACTGCTATATCTGGAACATGCCAGGAATGTCTATGGAGCCATGAGCATGTGTTGCCAGCAGGAAGGTGCCCCAGGCCATATGGACTGACCAATCAGTGTCCAGATACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3500 TNKS::ZNF343 ENSG00000173273.17::ENSG00000088876.13 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TNKS ENSG00000173273.17 protein_coding + + chr8:9555912-9782346:+ chr8:9752626:+ chr8:9413422-9639856:+ chr8:9610136:+ ZNF343 ENSG00000088876.13 protein_coding - + chr20:2481817-2524702:- chr20:2500384:+ chr20:2462463-2505348:- chr20:2481030:+ chr8:9757388,chr8:9757383 chr20:2499977,chr20:2499961 NA NA chr8:9614898,chr8:9614893 chr20:2480623,chr20:2480607 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),SAM_domain_(Sterile_alpha_motif)(38%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),SAM_1(0%),SAM_2(0%)| 5 6 10 218 12 ENST00000310430.11 unknown downstream upstream duplicates(3),mismatches(4) ATGAAGAACCAGGAAGGCCAGACGCCTCTGGATCTGGCAACA___GCTGACGATATCAGAGCTTTGCTGATAGATGCCATGCCCCCAGAGGCCTTACCTACCTGT...CTCTGATCTCACCAGCATCCACCCCCTCCTGCCTCTCGGCTGCCAGCAGCATAGACAACCTCACTGGCCCTTTAGCAGAGTTGGCCGTAGGAGGAGCCTCCAATGCAGGGGATGGCGCCGCGGGAACAGAAAGGAAGGAAGGAGAAG___TTGCTGGTCTTGACATGAATATCAGCCAATTTCTAAAAAGCCTTGGCCTTGAACACCTTCGGGATATCTTTGAAACAGAACAG|TAGCTGACAAATCCCTGGGAATCCAGCAGCCAAGATGAAATATGGCTGGGGCAAGGACGGTGATAACCTGAATGAGAGTACCAGTCTGGGGTAATATTCCCTGTGGAGATCCTTGCCCTTAAAATCACCCCAGTATTGTAGAAAAACAAGCAAGGCCTTGAGCCTCAATTGGAACACTTCAGGGTACAAGATGTCAGACGGGCAAAGGAAATACAGCCATGGTTTCGAGCAGAAAAGACGCTATGGGAATGTGAAAG LISPASTPSCLSAASSIDNLTGPLAELAVGGASNAGDGAAGTERKEGEVAGLDMNISQFLKSLGLEHLRDIFETEQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-597 chr8:9741672-9741768:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3501 TNKS::ENSG00000256566 ENSG00000173273.17::ENSG00000256566.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TNKS ENSG00000173273.17 protein_coding + + chr8:9555912-9782346:+ chr8:9752626:+ chr8:9413422-9639856:+ chr8:9610136:+ ENSG00000256566 ENSG00000256566.1 protein_coding - + chr20:2467212-2508907:- chr20:2500384:+ chr20:2447858-2489553:- chr20:2481030:+ chr8:9757388,chr8:9757383 chr20:2499977,chr20:2499961 NA NA chr8:9614898,chr8:9614893 chr20:2480623,chr20:2480607 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),SAM_domain_(Sterile_alpha_motif)(38%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),SAM_1(0%),SAM_2(0%)| 5 6 10 218 12 ENST00000310430.11 unknown downstream upstream duplicates(3),mismatches(3) ATGAAGAACCAGGAAGGCCAGACGCCTCTGGATCTGGCAACA___GCTGACGATATCAGAGCTTTGCTGATAGATGCCATGCCCCCAGAGGCCTTACCTACCTGT...CTCTGATCTCACCAGCATCCACCCCCTCCTGCCTCTCGGCTGCCAGCAGCATAGACAACCTCACTGGCCCTTTAGCAGAGTTGGCCGTAGGAGGAGCCTCCAATGCAGGGGATGGCGCCGCGGGAACAGAAAGGAAGGAAGGAGAAG___TTGCTGGTCTTGACATGAATATCAGCCAATTTCTAAAAAGCCTTGGCCTTGAACACCTTCGGGATATCTTTGAAACAGAACAG|TAGCTGACAAATCCCTGGGAATCCAGCAGCCAAGATGAAATATGGCTGGGGCAAGGACGGTGATAACCTGAATGAGAGTACCAGTCTGGGGTAATATTCCCTGTGGAGATCCTTGCCCTTAAAATCACCCCAGTATTGTAGAAAAACAAGCAAGGCCTTGAGCCTCAATTGGAACACTTCAGGGTACAAGATGTCAGACGGGCAAAGGAAATACAGCCATGGTTTCGAGCAGAAAAGACGCTATGGGAATGTGAAAG LISPASTPSCLSAASSIDNLTGPLAELAVGGASNAGDGAAGTERKEGEVAGLDMNISQFLKSLGLEHLRDIFETEQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-597 chr8:9741672-9741768:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3502 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE TRUE 308 TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63588829:- chr15:63836446-63893788:- chr15:63881028:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27827738:+ chr7:27778950-27884183:+ chr7:27867357:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 6 1 13 13 1132 ENST00000649220.2 ENST00000543117.5 upstream upstream duplicates(1),mismatches(3) CGCAGCCCGAGAGCGTGACGGACGCCAGGTTGGGGCACCTGTGAGGAGAGTGCGGTGACCCGGGGCTCACTGGCTTGTTAAAGCTACCCAACCGCCCCATG...TTCATCCTGGCCCAGGTACTGCAGCTCCAAATCGTGGGGATTCTGTAAGAGCTTGCTACCTGTTGACTGAGGAGGCCCACGAGTTGA___GAAGAACTAGCAAG...GTACTCACCCGGAACCATGGTGCACCACCACAGCGGCGAGGTCATACAGGCAGCTCTCCGGGCCACTGTTCTCAGGCTACAGAACAAGGAAGAAGGAGCAGTGGTCAATGACATCAGTATCTCGATGACCTCTACCCTCTCCATGTGATGACAATCTTACTGAAGAGCCATTTTTTCACCATGCTAAAAAG|GAAGATGAGAATGTGCCTACTGCTCCTGATCCTCCAAGTCAACATTTACGTGGGCATGGGACAGGCTTTTGCTTTGATTCCAG___CTTTGATGTTCACAAGAAGTGTCCCCTCTGTGAGTTAATGTTTCCTCCTAACTATGATCAGAGCAAATTTGAAGAACATGTTGAAAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3503 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE TRUE 309 TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63594695:- chr15:63836446-63893788:- chr15:63886894:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27816349:+ chr7:27778950-27884183:+ chr7:27855968:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 3 0 13 35 1046 ENST00000649220.2 ENST00000543117.5 upstream upstream duplicates(1),mismatches(3) CGCCAGGCAGTCGTCGGTAACGTGGCCGCAGCCCGAGAGCGTGACGGACGCCAG___...GGAGGACTCGGGCCCTGCGAG___GTCACTTCATCCTGGCCCAGGTACTGCAGCTCCAAATCGTGGGGATTCTGTAAGAGCTTGCTACCTGTTGACTGAGGAGGCCCACGAGTTGA|GAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAG___ATGGAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3504 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63594695:- chr15:63836446-63893788:- chr15:63886894:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27827738:+ chr7:27778950-27884183:+ chr7:27867357:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 3 2 10 35 1132 ENST00000649220.2 ENST00000543117.5 upstream upstream duplicates(1),mismatches(3) GTGGCCGCAGCCCGAGAGCGTGACGGACGCCAG___...CCGGGGCTCACTGGCTTGTTAAAGCTACCCAACCGCCCC?...GGAGGACTCGGGCCCTGCGAG___GTCACTTCATCCTGGCCCAGGTACTGCAGCTCCAAATCGTGGGGATTCTGTAAGAGCTTGCTACCTGTTGACTGAGGAGGCCCACGAGTTGA|GAAGATGAGAATGTGCCTACTGCTCCTGATCCTCCAAGTCAACATTTACGTGGGCATGGGACAGGCTTTTGCTTTGATTCCAG___CTTTGATGTTCACAAGAAGTGTCCCCTCTGTGAGTTAATGTTTCCTCCTAACTATGATCAGAGCAAATTTGAAGAACATGTTGAAAGTCACTGGAAGGTGTGCCCGATGTGCAG...TATGACCAGCAGGTGTTTGAAAGGCATGTGCAGACCCATTTTGATCAGAATGTTCTAAATTTTGACTAGTTACTTTTTATTATGAGTTAATATAGTTTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3505 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63600589:- chr15:63836446-63893788:- chr15:63892788:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27816349:+ chr7:27778950-27884183:+ chr7:27855968:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 2 1 9 42 1046 ENST00000649220.2 ENST00000543117.5 upstream upstream mismatches(1) GTGGCCGCAGCCCGAGAGCGTGACGGACGCCAGGTTGGGGCACCTGTGAGGAGAGTGCGGTGACCCGGGGCTCACTGGCTTGTTAAAGCTACCCAACCGCCCCATGGGACCGAGTGGACTCATTTACCGAGGAGGACTCGGGCCCTGCGAG|GAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAG___ATGGAGCAGATGGTGCTTTTTACCCAGA...CAATGTTGTCTGCAGCCAGCCTGCTCGAAACTTTAGTCGGCCTGATGGCTTAGAGGACTCTGAGGATAGCAAA___GAAGATGAGAATGTGCCTACTGCTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3506 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63599183:- chr15:63836446-63893788:- chr15:63891382:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27816349:+ chr7:27778950-27884183:+ chr7:27855968:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 1 0 10 6 1046 ENST00000668026.1 ENST00000543117.5 upstream upstream mismatches(2) GCCGCAGCCCGAGAGCGTGACGGACGCCAG___GGAAAAAACAAAGAGCGGACTGTCCCCCTGCCCAGCCATCCTCAGCCATTCCTCCCGACCTGAGCTGAGTGCCAGAAGAACCAGATTCAGTAGACGTTCATCAGTACCTACTATGTGCCAG|GAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3507 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63600589:- chr15:63836446-63893788:- chr15:63892788:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27827738:+ chr7:27778950-27884183:+ chr7:27867357:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_receptor_zinc_finger-C2H2_domain(100%) |Zn-C2H2_12(100%) 3 0 7 42 1132 ENST00000649220.2 ENST00000543117.5 upstream upstream mismatches(1) CGTGGCCGCAGCCCGAGAGCGTGACGGACGCCAGGTTGGGGCACCTGTGAGGAGAGTGCGGTGACCCGGGGCTCACTGGCTTGTTAAAGCTACCCAACCGCCCCATGGGACCGAGTGGACTCATTTACCGAGGAGGACTCGGGCCCTGCGAG|GAAGATGAGAATGTGCCTACTGCTCCTGATCCTCCAAGTCAACATTTACGTGGGCATGGGACAGGCTTTTGCTTTGATTCCAG___CTTTGATGTTCACAAGAAGTGTCCCCTCTGTGAGTTAATGTTTCCTCCTAACTATGATCAGAGCAAATTTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3509 TM2D1::PATJ ENSG00000162604.13::ENSG00000132849.22 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TM2D1 ENSG00000162604.13 protein_coding - - chr1:61681046-61725423:- chr1:61723713:- chr1:62146718-62191095:- chr1:62189385:- PATJ ENSG00000132849.22 protein_coding + - chr1:61742477-62178675:+ chr1:61745232:- chr1:62208149-62644347:+ chr1:62210904:- chr1:61714421,chr1:61714424 chr1:61750635,chr1:61750635 NA NA chr1:62180093,chr1:62180096 chr1:62216307,chr1:62216307 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 4 11 707 28 ENST00000371180.7 unknown upstream downstream duplicates(3),mismatches(1) CAGACTCGTTGGTGTCCTGTGGTTCGTCTCAGTCACTACAGGACCCTGGGGGGCTGTTGCCACCTCCGCCGGGGGCGAGGAGTCGCTTAAGTGCGAGGACCTCAAAGTGGGACA___ATATATTTGTAAAGATCCAAAAATAAATGACGCTACGCAAGAACCAGTTAACTGTACAAACTACACAGCTCATG|GTCATAAGACCCCCATAAGAAGGGGTCCTGCCCATACCCTGGAGGAAGGAATGCTACAGAGAGAGGCCAAGAAAAATCTGAACAGATAGGCATTGCTGGGTTTCCCTACCCCATGCTTCAATTATGTCTACTCAATGAAGTCTCCATAAAAAGCCCAAGAAGATGGGGTAGGGAGAGCTTCTCAATATCTGAACACATGGAGGTTCCTGGAGGGTGGCATGCCCCTTCTCATACCTCACCCTGTGCATCTCTTCCTCTT RLVGVLWFVSVTTGPWGAVATSAGGEESLKCEDLKVGQYICKDPKINDATQEPVNCTNYTAH|ghktpirrgpahtleegmlqreakknlnr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3510 TEAD1::ENSG00000255558 ENSG00000187079.20::ENSG00000255558.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 602 TRUE 213 TEAD1 ENSG00000187079.20 protein_coding + + chr11:12674421-12944737:+ chr11:12764434:+ chr11:12695968-12966284:+ chr11:12785981:+ ENSG00000255558 ENSG00000255558.1 lncRNA - - chr11:13054615-13134839:- chr11:13065626:- chr11:13076162-13156386:- chr11:13087173:- chr11:12834017,chr11:12834017,chr11:12834017,chr11:12821664 chr11:13100827,chr11:13100830,chr11:13100865,chr11:13111164 NA NA chr11:12855564,chr11:12855564,chr11:12855564,chr11:12843211 chr11:13122374,chr11:13122377,chr11:13122412,chr11:13132711 NA NA sense sense unknown CDS/splice-site intron inversion high none TEA/ATTS_domain(55%)| TEA(0%)| 4 6 5 291 7 ENST00000527636.7 ENST00000531136.1 downstream downstream duplicates(1),mismatches(1) CCGGGCGCTGCGGTGGCTCCCTGGGCCGAG___...GCTGCCGCTGCCGCCGCCGCTTCATTGCACATTCAAGTGGAAAATTTTCAGGAGTCAGCAGAAACATTGTGTCCAAAAAAGACTGAGTCG...___GTTTATTTTCTTGAAAAGGCTCCAGGCTTCGGCTTGGAAAATCCCACCGCCAAAATTGAGCCCAGCAGCTGGAGCGGCAGTGAGAGCCCTGCCGAAAACATGGAAAGGATGAGTGACTCTGCAGATAAGCCAATTGACAATGATGCAGAAGGGGTCTGGAGCCCCGACATCGAGCAAAGCTTTCAGGAGGCCCTGGCTATCTATCCACCATGTGGGAGGAGGAAAATCATCTTATCAGACGAAGGCAAAATGTATG|GTCTGAAGCCGTCAGCTGCCAGCAGCACCCCTTCACTGATTGGTCCTGCCCCTCAGaTCATATGAGGGTGAAGGGAG___AGTTCTCTACCTTGGCAAATGGCACCACCATCCATCTGACTGGACCAAGCACAAGCTTGAGAGCCACGCTTGACACCTCCTTTCCCTTCAGCACCTCCCTACCACCACATTCAATCTGTCCAGGAATAGCAGGAGATAGAAGGAACACAGGGGAGGCAGGAGAGCAAGGCTGTTGCCCTCATCCGCTACCTCCTGGCTGACTGAGGGCGGATGTGTTAGATAAATCTGAGAACTCAAAGAAGCGCAG...TGGAGGATCTGAGCACCCAGGGCCACTGAATGGAGCAGCCAAGCCAAAGCCAAATGGGAATCTCATCAGAGTTGTCTGATGCCAGAGAGAGCCAAGGTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3511 TEAD1::ENSG00000255558 ENSG00000187079.20::ENSG00000255558.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 602 TRUE 213 TEAD1 ENSG00000187079.20 protein_coding + + chr11:12674421-12944737:+ chr11:12764434:+ chr11:12695968-12966284:+ chr11:12785981:+ ENSG00000255558 ENSG00000255558.1 lncRNA - - chr11:13054615-13134839:- chr11:13055034:- chr11:13076162-13156386:- chr11:13076581:- chr11:12834017,chr11:12834017,chr11:12834017,chr11:12821664 chr11:13100827,chr11:13100830,chr11:13100865,chr11:13111164 NA NA chr11:12855564,chr11:12855564,chr11:12855564,chr11:12843211 chr11:13122374,chr11:13122377,chr11:13122412,chr11:13132711 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none TEA/ATTS_domain(55%)| TEA(0%)| 1 2 5 291 14 ENST00000527376.3 ENST00000531136.1 downstream downstream duplicates(2),mismatches(1) CCGGGCGCTGCGGTGGCTCCCTGGGCCGAG___GTTTATTTTCTTGAAAAGGCTCCAGGCTTCGGCTTGGAAAATCCCACCGCCAAAATTGAGCCCAGCAGCTGGAGCGGCAGTGAGAGCCCTGCCGAAAACATGGAAAGGATGAGTGACTCTGCAGATAAGCCAATTGACAATGATGCAGAAGGGGTCTGGAGCCCCGACATCGAGCAAAGCTTTCAGGAGGCCCTGGCTATCTATCCACCATGTGGGAGGAGGAAAATCATCTTATCAGACGAAGGCAAAATGTATG|AGTTCTCTACCTTGGCAAATGGCACCACCATCCATCTGACTGGACCAAGCACAAGCTTGAGAGCCACGCTTGACACCTCCTTTCCCTTCAGCACCTCCCTACCACCACATTCAATCTGTCCAGGAATAGCAGGAGATAGAAGGAACACAGGGGAGGCAGGAGAGCAAGGCTGTTGCCCTCATCCGCTACCTCCTGGCTGACTGAGGGCGGATGTGTTAGATAAATCTGAGAACTCAAAGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3513 ATG9A::TUBA4A ENSG00000198925.12::ENSG00000127824.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 603 TRUE 214 ATG9A ENSG00000198925.12 protein_coding - - chr2:219219380-219229717:- chr2:219223585:- chr2:220084102-220094439:- chr2:220088307:- TUBA4A ENSG00000127824.15 protein_coding - - chr2:219249710-219277902:- chr2:219264972:- chr2:220114432-220142624:- chr2:220129694:- chr2:219223032,chr2:219223041,chr2:219223041 chr2:219265560,chr2:219265566,chr2:219265565 NA NA chr2:220087754,chr2:220087763,chr2:220087763 chr2:220130282,chr2:220130288,chr2:220130287 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Autophagy_protein_ATG9(100%)|Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%) ATG9(100%)|Tubulin(82%),Tubulin_C(100%) 2 1 12 387 9 ENST00000396761.6 unknown upstream downstream duplicates(1),mismatches(2) CTCACATCCACTACATGCCTGACCACTGGCAGG___...CCGGGACGAGTTTGCCCAGCTCTTCCAGTACAAGGCA___GTGTTCATTTTGGAAGAGTTGCTGAGCCCCATTGTCACACCCCTCATCCTCATCTTCTGCCTGCGCCCACGGGCCCTGGAGATTATAGACTTCTTCCGAAACTTCACCGTGGAGGTCGTTGGTGTGGGAGATACCTGCTCCTTTGCTCAGATGGATGTTCGCCAGCATGGTCATCCCCAG|CTCTGTGTCTGCACTCACCCAGCTAAACAGTGGCCATAGAAAAATCCAGAACCATGCTG...ATGTTcCaAACGCATGGCCACTAGCCTCAAATGGGCCCTCATGTTGCCTGGAAATCACACCACAGTAGCCCCCCATTAGCCACTTTCTGCAGTTTCAGTTGCCTGCAGCCAACCAC RDEFAQLFQYKAVFILEELLSPIVTPLILIFCLRPRALEIIDFFRNFTVEVVGVGDTCSFAQMDVRQHGHPQ|lcvcthpakqwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3514 ATG9A::TUBA4A ENSG00000198925.12::ENSG00000127824.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 603 TRUE 214 ATG9A ENSG00000198925.12 protein_coding - - chr2:219219380-219229717:- chr2:219223585:- chr2:220084102-220094439:- chr2:220088307:- TUBA4A ENSG00000127824.15 protein_coding - - chr2:219249710-219277902:- chr2:219252230:- chr2:220114432-220142624:- chr2:220116952:- chr2:219223032,chr2:219223041,chr2:219223041 chr2:219265560,chr2:219265566,chr2:219265565 NA NA chr2:220087754,chr2:220087763,chr2:220087763 chr2:220130282,chr2:220130288,chr2:220130287 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Autophagy_protein_ATG9(100%)|Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%) ATG9(100%)|Tubulin(82%),Tubulin_C(100%) 2 2 3 387 792 ENST00000396761.6 ENST00000248437.9 upstream downstream duplicates(3),mismatches(1) GTAATGCCCACCGCTCGCAGACCCGGGACGAGTTTGCCCAGCTCTTCCAGTACAAGGCA___GTGTTCATTTTGGAAGAGTTGCTGAGCCCCATTGTCACACCCCTCATCCTCATCTTCTGCCTGCGCCCACGGGCCCTGGAGATTATAGACTTCTTCCGAAACTTCACCGTGGAGGTCGTTGGTGTGGGAGATACCTGCTCCTTTGCTCAGATGGATGTTCGCCAGCATGGTCATCCCCAG|CGTGAATGCATCTCAGTCCACGTGGGGCAGGCAGGTGTCCAGATGGGCAATGCCTGCTGGGAGCTCTATTGCTTGGAACATGGGATTCAGCCTGATGGGCAGATGCCCAGTGACAAGACCATTGGTGGAGGGGACGACTCCTTCACCACCTTCTTCTGTGAAACTGGTGCTGGAAAACACGTACCCCGGGCAGTTTTTGTGGATCTGGAGCCTACGGTCATTG___ATGAGATCCGAAATGGCCCATACCGACAGCTCTTCCACCCAGAGCAGCT NAHRSQTRDEFAQLFQYKAVFILEELLSPIVTPLILIFCLRPRALEIIDFFRNFTVEVVGVGDTCSFAQMDVRQHGHPQ|RECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3515 SOX5::DNAI7 ENSG00000134532.20::ENSG00000118307.20 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895898:- chr12:23682438-24715478:- chr12:24048832:- DNAI7 ENSG00000118307.20 protein_coding - + chr12:25108289-25195162:- chr12:25194865:+ chr12:25261223-25348096:- chr12:25347799:+ chr12:23843757,chr12:23880106,chr12:23880108 chr12:25129933,chr12:25191353,chr12:25191351 NA NA chr12:23996691,chr12:24033040,chr12:24033042 chr12:25282867,chr12:25344287,chr12:25344285 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 9 4 0 670 36 ENST00000441133.2 unknown upstream upstream none GAAGAATGCACACTATCTCCTGTTG___GTTCAGTTGGAGACGATCATAGGTGGCTGCTGTGACAAAGGGAAATTGTGCTTTTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCAT|AAACTGGTTTGGGACTCCTACCTGTCCGCCTGGTCCAGGTAAGGAAAGCCATTGCTGAGAAGAGGGCCGACCCACCCCAAG___GTATGTTATGCATAAAAGTGGATAATTT...TAAAAAGCGTTTGAAGAACATTTTCCTTAAAAACAAAGATGTGAAGAATCCAGAGAAGATCAAAGAACTTATTGCACAGGGCGAATTTGTAATGAAAGAGC MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLH|klvwdsylsawsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3516 ATG9A::TUBA4B ENSG00000198925.12::ENSG00000243910.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATG9A ENSG00000198925.12 protein_coding - - chr2:219219380-219229717:- chr2:219223585:- chr2:220084102-220094439:- chr2:220088307:- TUBA4B ENSG00000243910.8 protein_coding + - chr2:219253243-219272197:+ chr2:219264972:- chr2:220117965-220136919:+ chr2:220129694:- chr2:219223032,chr2:219223041,chr2:219223041 chr2:219265560,chr2:219265566,chr2:219265565 NA NA chr2:220087754,chr2:220087763,chr2:220087763 chr2:220130282,chr2:220130288,chr2:220130287 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Autophagy_protein_ATG9(100%)| ATG9(100%)| 2 1 9 387 9 ENST00000409033.7 unknown upstream downstream duplicates(1),mismatches(1) AGCACATGGTGTTCTGCCCTGAGCAGtTGCTCCGCGTGATCCTCGCTCACATCCACTACATGCCTGACCACTGGCAGG___GTGTTCATTTTGGAAGAGTTGCTGAGCCCCATTGTCACACCCCTCATCCTCATCTTCTGCCTGCGCCCACGGGCCCTGGAGATTATAGACTTCTTCCGAAACTTCACCGTGGAGGTCGTTGGTGTGGGAGATACCTGCTCCTTTGCTCAGATGGATGTTCGCCAGCATGGTCATCCCCAG|CTCTGTGTCTGCACTCACCCAGCTAAACAGTGGCCATAGAAAAATCCAGAACCATGCTG...ATGTTcCaAACGCATGGCCACTAGCCTCAAATGGGCCCTCATGTTGCCTGGAAATCACACCACAGTAGCCCCCCATTAGCCACTTTCTGCAGTTTCAGTTGCCTGCAGCCAACCAC HMVFCPEQLLRVILAHIHYMPDHWQGVHFGRVAEPHCHTPHPHLLPAPTGPGDYRLLPKLHRGGRWCGRYLLLCSDGCSPAWSSP|alclhsps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3517 LINC02955::LMNTD1 ENSG00000256995.8::ENSG00000152936.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02955 ENSG00000256995.8 lncRNA + + chr12:22699859-23188807:+ chr12:23167078:+ chr12:22852793-23341741:+ chr12:23320012:+ LMNTD1 ENSG00000152936.11 protein_coding - + chr12:25409307-25648579:- chr12:25450206:+ chr12:25562241-25801513:- chr12:25603140:+ chr12:23168066 chr12:25447574 NA NA chr12:23321000 chr12:25600508 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 1 9 4 23 ENST00000651851.1 unknown downstream upstream duplicates(3),mismappers(1),mismatches(1) GTGCTCTACTTGTTGGAGGATTGTCCATCCACTCTTCTTCCTGTACTTACCAGGACAGAACAGCCGCAACTTCTCAGACAGTTCATTCTTCTTTTCCTC...GGCAGCACCAGCTCATTAGAACCATTTGTGTGACTGACTGAAGACAGCTCACCTTGGAACACTGCAG___GTTGAAGATCATCTCTTCTTTTTTTCATGGTGTTAAGCAT|GTGGAAGGGACTTGCCTTGTCTCAGATGAAACTTTGGACTGTGGACTTTTGGGTTAATGCTGAAGTGAGTTAAGACTTTGGAGGACTGTTGGGAAGG...___TGGCAACATCACTCTGAATATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3518 ARHGAP44::LINC00670 ENSG00000006740.18::ENSG00000179136.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 604 TRUE 215 ARHGAP44 ENSG00000006740.18 protein_coding + + chr17:12789498-12991643:+ chr17:12850762:+ chr17:12692815-12894960:+ chr17:12754079:+ LINC00670 ENSG00000179136.8 lncRNA + + chr17:12549764-12642854:+ chr17:12584560:+ chr17:12453081-12546171:+ chr17:12487877:+ chr17:12851090,chr17:12851091 chr17:12578046,chr17:12578044 NA NA chr17:12754407,chr17:12754408 chr17:12481363,chr17:12481361 NA NA sense sense unknown intron exon/splice-site duplication high none BAR_domain(7%)| BAR(39%)| 1 1 8 4 8 unknown ENST00000577863.2 downstream upstream none CTGATCTCCCGCTGATGTCCACCTGGAGTCACCAGGATTGATCCTCGTCTACCTGGGTCCACATAGACTGCCAAGACTCGTGCCCCAAAACCTTAACAAGCACAG|GCAACAAGAAGAATGAAAAAACGTAGAAGAGAAAGCCTCGTGAAACTGAGAAGCATCTGCAACCACAAACTACAAAATGTAGCTGCTAAACAAAATGAAAGTTGGATCAAAGTGGTGGCAAATATCAAGAGTGAATATACTCCACGGCAGAGTACTGCAAAT___GCTGCACATCTTTCATGGATTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3519 ARHGAP44::LINC00670 ENSG00000006740.18::ENSG00000179136.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 604 TRUE 215 ARHGAP44 ENSG00000006740.18 protein_coding + + chr17:12789498-12991643:+ chr17:12789891:+ chr17:12692815-12894960:+ chr17:12693208:+ LINC00670 ENSG00000179136.8 lncRNA + + chr17:12549764-12642854:+ chr17:12584560:+ chr17:12453081-12546171:+ chr17:12487877:+ chr17:12851090,chr17:12851091 chr17:12578046,chr17:12578044 NA NA chr17:12754407,chr17:12754408 chr17:12481363,chr17:12481361 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none BAR_domain(7%)| BAR(0%)| 0 2 7 39 8 ENST00000379672.10 ENST00000577863.2 downstream upstream duplicates(1) GGAGGAGTAGGCGGCGGCGCCCTCGGGAGGGAGCTGCGCGCGGGCCAGACGGCGCCCGGAGGCTCCGCAGTGCCGCCGCCGTCGCCCGGGAGGCTCCGCGCGGGAGCCATGTAACCCTGCGGCGGGCTCCGGGCTGCTCCGTCCTTCCCCAGCTCCCGGGCTAGCGCGGCAGCGGGGCCACGATGAAGAAGCAGTTCAATCGCATGCGCCAGCTGGCCAACCAGACGGTGGGCAG|GCAACAAGAAGAATGAAAAAACGTAGAAGAGAAAGCCTCGTGAAACTGAGAAGCATCTGCAACCACAAAC...CTAAACAAAATGAAAGTTGGATCAAAGTGGTGGCAAATATCAAGAGTGAATATACTCCACGGCAGAGTACTGCAAAT___GCTGCACATCTTTCATGGATTCTGGTCCACCTCGTCCTCACGCGGGGATGCAGACTGACAA MKKQFNRMRQLANQTVGr|qqee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3520 ARHGAP44::LINC00670 ENSG00000006740.18::ENSG00000179136.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 604 TRUE 215 ARHGAP44 ENSG00000006740.18 protein_coding + + chr17:12789498-12991643:+ chr17:12789891:+ chr17:12692815-12894960:+ chr17:12693208:+ LINC00670 ENSG00000179136.8 lncRNA + + chr17:12549764-12642854:+ chr17:12590441:+ chr17:12453081-12546171:+ chr17:12493758:+ chr17:12851090,chr17:12851091 chr17:12578046,chr17:12578044 NA NA chr17:12754407,chr17:12754408 chr17:12481363,chr17:12481361 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none BAR_domain(7%)| BAR(0%)| 0 2 6 39 15 ENST00000379672.10 ENST00000577863.2 downstream upstream none CGGCGCCCTCGGGAGGGAGCTGCGCGCGGGCCAGACGGCGCCCGGAGGCTCCGCAGTGCCGCCGCCGTCGCCCGGGAGGCTCCGCGCGGGAGCCATGTAACCCTGCGGCGGGCTCCGGGCTGCTCCGTCCTTCCCCAGCTCCCGGGCTAGCGCGGCAGCGGGGCCAC...TGAAGAAGCAGTTCAATCGCATGCGCCAGCTGGCCAACCAGACGGTGGGCAG|GCTGCACATCTTTCATGGATTCTGGTCCACCTCGTCCTCACGCGGGGATGCAGACTGACAAGCTTCCACCATGAAGGGTTGTCATTTGCCATAGCAGGGAGAGGAAAATGGAGCAAATCAGTCACCAGCTCGTCATACAGAAGAGTGTCCCACGTCATATCTGCTGATATGTTATGGCCAAAGTACATGACTATCTCCAAGGAGCTGAGAGGTGAAATTCGGACATTTGTCTGGACGGAGTAGAACCAAGAGAGTCGTAAACATCCTGTGGAC KKQFNRMRQLANQTVGr|lhifhgfwstsssrgdad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3521 ARHGAP44::LINC00670 ENSG00000006740.18::ENSG00000179136.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 604 TRUE 215 ARHGAP44 ENSG00000006740.18 protein_coding + + chr17:12789498-12991643:+ chr17:12789891:+ chr17:12692815-12894960:+ chr17:12693208:+ LINC00670 ENSG00000179136.8 lncRNA + + chr17:12549764-12642854:+ chr17:12632708:+ chr17:12453081-12546171:+ chr17:12536025:+ chr17:12851090,chr17:12851091 chr17:12578046,chr17:12578044 NA NA chr17:12754407,chr17:12754408 chr17:12481363,chr17:12481361 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none BAR_domain(7%)| BAR(0%)| 0 1 1 39 3 ENST00000379672.10 ENST00000698418.1 downstream upstream none AGGGAGCTGCGCGCGGGCCAGACGGCGCCCGGAGGCTCCGCAGTGCCGCCGCCGTCGCCCGGGAGGCTCCGCGCGGGAGCCATGTAACCC...CGATGAAGAAGCAGTTCAATCGCATGCGCCAGCTGGCCAACCAGACGGTGGGCAG|ACCATGGCACCTGCAACAGCACCTCTGGCCTGTTTCTCACCAATTC...GATGAACATGTCTGAACCTTAATGTCAGCATATAGGGGTTCGACAGACAGCTACTATGAGAGAATATGCAAAGTCACATGAAATTGAG___CTTTGCCTTTCCT MKKQFNRMRQLANQTVGr|pwhlqqhlwpvshq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3524 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 605 FALSE NA HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10495691:- chrX:10413350-10851773:- chrX:10463731:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Fibronectin_type_III_domain(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%) 1 0 0 79 165 ENST00000669054.1 ENST00000380787.5 upstream downstream none CCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTC...GATCTTTGCTAAGGCCTAAATGAATGAAG|GTCAATGCATCACGTCAAGAAGCCAAATTGACAGAGGAGTGTGATCTTCTCATTGAGATCATTCAGCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3526 KANSL1::CPD ENSG00000120071.15::ENSG00000108582.12 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KANSL1 ENSG00000120071.15 protein_coding - - chr17:46029916-46225389:- chr17:46170855:- chr17:44107282-44302755:- chr17:44248221:- CPD ENSG00000108582.12 protein_coding + - chr17:30378927-30469989:+ chr17:30429565:- chr17:28705945-28797007:+ chr17:28756583:- chr17:46142221,chr17:46142223 chr17:30451619,chr17:30451618 NA NA chr17:44219587,chr17:44219589 chr17:28778637,chr17:28778636 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 1 2 6 332 25 ENST00000574590.6 unknown upstream downstream duplicates(2),mismatches(3) TTTTGGAGAAGACTTTGAGCAAACTGCCAAACTTGGAATCCTTGAGACCACGGAGCCAGTTGATGCTGACTCGAAAGGCTGAAGCTGCCTTGAGAAAAGCTGCCAGTGAGACCACCACTTCAGAGGGACTTAGCAACTTTCTGAAAAGCAATTCAATTTCAGAAGAATTGGAGAGATTTACAGCTAGTGGCATAGCCAACTTGAGGTGCAGTGAACAGGCATTTGATTCAGATGTCACTGACAGTAGTTCAGGAGGGGAGTCTGATATTGAAGAGGAAGAACTGACCAGAGCTGATCCCGAGCAGCGTCATGTACCCCT|CTTAATTCACAAGCTCCAGCTGCGGACTCTATGAGGATTTTTTACTCCTGTACAGCAACAAAGAAATTCTCCTTCAAACTGCTTTGCCAAGATTTCAAACTCCATTTAAATAAGGATTTTAAGATGAGAAAACAAAATATGTCATGGAAAGAAAAATGTCTGCATGACTGAAGATTCCTACCTCTCACCATGCCAAGGTCTGGA LEKTLSKLPNLESLRPRSQLMLTRKAEAALRKAASETTTSEGLSNFLKSNSISEELERFTASGIANLRCSEQAFDSDVTDSSSGGESDIEEEELTRADPEQRHVPl|lihklqlrtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3536 TRMO::CA10 ENSG00000136932.15::ENSG00000154975.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRMO ENSG00000136932.15 protein_coding - - chr9:97904489-97922500:- chr9:97922418:- chr9:100666771-100684782:- chr9:100684700:- CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51747818:- chr17:49707674-50237377:- chr17:49825178:- chr9:97913842,chr9:97913846 chr17:51865536,chr17:51865537 NA NA chr9:100676124,chr9:100676128 chr17:49942896,chr17:49942897 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Eukaryotic-type_carbonic_anhydrase(80%) |Carb_anhydrase(38%) 1 2 1 172 3 ENST00000375119.8 ENST00000442502.6 upstream downstream none CGGAAGCGGAAGGTTGAATGCGTCGGGTGGGCACCTCAGCAACCAGTAGCCATGCGCGGCTTGGAGGAGTCGGGGCCTCGGCCTACAGCGACCCCGTGCGGCTGCGTTAAGCCGGCTCTGGAGACAG|GTCAGTGGGACCATGTACAACACTGGAAGACACGTATCCCTTCGCCTGGACAAGGAGCACTTGGTCAACATATCTGGAGGGCCCATGACATACAGCCACCGGCTGGAGGAGATCCGACTACACTTTGG...ATGCAG___ATGCATTCCTTGCGCCTGCTCAGCCAGAACCAGCCATCTCAGATCTTTCTGAGCATGAGTGACAACTTCAGGCCTGTCCAGCCACTCAACAACCG MRGLEESGPRPTATPCGCVKPALET|gqwdhvqhwktripspgqgalgqhiwrahdiqppaggdpttl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3545 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 2 44 148 ENST00000641588.1 ENST00000502082.5 upstream downstream duplicates(2) GGCTGTGGCTTGCCTTTTtACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACcAGCTGTCCCTACTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3551 KRAS::LINC02955 ENSG00000133703.14::ENSG00000256995.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 608 TRUE 216 KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25225614:- chr12:25358180-25403870:- chr12:25378548:- LINC02955 ENSG00000256995.8 lncRNA + + chr12:22699859-23188807:+ chr12:22787560:+ chr12:22852793-23341741:+ chr12:22940494:+ chr12:25223870,chr12:25223872 chr12:22757846,chr12:22757844 NA NA chr12:25376804,chr12:25376806 chr12:22910780,chr12:22910778 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Ras_family(83%)| Arf(55%),GTP_EFTU(10%),MMR_HSR1(100%),Ras(55%),Roc(100%)| 1 1 9 3613 11 ENST00000693229.1 ENST00000536744.5 upstream upstream duplicates(1) TCAGCGGCTCCCAGGTGCGGGAGAGAG___GCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCTTGACGATA...TTCAGAATCATTTTGTGGACGAATATGATCCAACAATAGAG___...CTTTCTTTGTGTATTTGCCATAAATAATACTAAATCATTTGAA?ATATTCACCATTATAG___AGAACAAATTAAAAGAGTTAAGGACTCTGAAGATGTACCTATGGTCCTAGTAGGAAATAA...ACACAAAACAGGCTCAGGACTTAGCAAGAAGTTATGGAATTCCTTTTATTGAAACATCAGCAAAGACAAGACAG|GTAACACAGGAGGCAACACAGATTCTTCAAGTCTCACAGCTACTCCCTAGGGATCACTGGGGAACTTGGAAAAAATCTATTGGCTCAGCTAGTGAGCGATCACTTCCTGTACCACTGTTCTGAGGGCGGACTTCCAGCTCAGGATCATG...CACATCTGCACGAACTGGAGTATTAGAATAGAGGTTGCCTTTCAGAAGAAAACTTGAGCTAAGGGAATGGAATATGTTATTTTCTGTTTCTTCCTTCCGTG TKQAQDLARSYGIPFIETSAKTRQ|vtqeatqilqvsqllprdhwgtwkksigsaserslpvplf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 3552 KRAS::LINC02955 ENSG00000133703.14::ENSG00000256995.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 608 TRUE 216 KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25225614:- chr12:25358180-25403870:- chr12:25378548:- LINC02955 ENSG00000256995.8 lncRNA + + chr12:22699859-23188807:+ chr12:22861069:+ chr12:22852793-23341741:+ chr12:23014003:+ chr12:25223870,chr12:25223872 chr12:22757846,chr12:22757844 NA NA chr12:25376804,chr12:25376806 chr12:22910780,chr12:22910778 NA NA sense sense stop-codon CDS/splice-site exon/splice-site inversion medium none Ras_family(83%)| Arf(55%),GTP_EFTU(10%),MMR_HSR1(100%),Ras(55%),Roc(100%)| 2 3 5 3613 15 ENST00000687356.1 ENST00000538317.6 upstream upstream mismappers(1) TTCAGAATCATTTTGTGGACGAATATGATCCAACAATAGAG___AGAACAAATTAAAAGAGTTAAGGACTCTGAAGATGTACCTATGGTCCTAGTAGGAAATAAATGTGATTTGCCTTCTAGAACAGTAGACACAAAACAGGCTCAGGACTTAGCAAGAAGTTATGGAATTCCTTTTATTGAAACATCAGCAAAGACAAGACAG|GTTGCCCTTCATCACTCAGCAGTGAAGAATGAAAATCAACAGAGCTTTCCCCAGCCTGCTGCTTAAGCAGCTGCTAGCAGGCTGAGGCTGCCCAGCCTCATTAACCCATTAGATGCTGCGTTCGCCCGGGAGTCATTCTTAATGAGGCTGCTGCAG___GCTTTAAAGTGTCTTCAGCTTGGAGGTGGGGTTTCACCAGGTACCCGCCCCTATCTGCCCAGGCATTTGGCTGTTTCCTG...AGGAAG___GCAATGAGGACGTTGCACAAGACAGTCCCTGATACCCAGAGTTTACTGCCTAAGAGAGGATACATCCTTCAAACCAATAATCTGCTAATAGCAAG...GATATTGAATGAATTAATGAATGTAAAAACCTCAAAACCCTGCCTGGCCCAGA___GCTTTGGAATGGGTTTGGATCTACCACTCAACTGCTTTATGACTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 3553 KRAS::LINC02955 ENSG00000133703.14::ENSG00000256995.8 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 608 TRUE 216 KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25225614:- chr12:25358180-25403870:- chr12:25378548:- LINC02955 ENSG00000256995.8 lncRNA + + chr12:22699859-23188807:+ chr12:22887964:+ chr12:22852793-23341741:+ chr12:23040898:+ chr12:25223870,chr12:25223872 chr12:22757846,chr12:22757844 NA NA chr12:25376804,chr12:25376806 chr12:22910780,chr12:22910778 NA NA sense sense stop-codon CDS/splice-site exon/splice-site inversion medium none Ras_family(83%)| Arf(55%),GTP_EFTU(10%),MMR_HSR1(100%),Ras(55%),Roc(100%)| 4 2 2 3613 26 ENST00000687356.1 ENST00000538317.6 upstream upstream duplicates(1) CCGCCATTTCGGACTGGGAGCGAGCGCGGCGCAGGCACTGAAGGCGGCGGCGGGGCCAGAGGCTCAGCGGCTCCCAGGTGCGGGAGAGAG___GCCTGCTGAAAATGACTGAATATAAACTTGTGGTAGTTGGAGCTGGTGGCGTAGGCAAGAGTGCCT...GAGAACAAATTAAAAGAGTTAAGGACTCTGAAGATGTACCTATGGTCCTAGTAGGAAATAAATGTGATTTGCCTTCTAGAACAGTAGACACAAAACAGGCTCAGGACTTAGCAAGAAGTTATGGAATTCCTTTTATTGAAACATCAGCAAAGACAAGACAG|ATGAGAAAACAGAAGCAAAGGCAGAAAGATGCTACATTGCCAGCTTTGAAGATGGAGGGAAGAGGTCACAAACCAAGGAAG___GCAATGAGGACGTTGCACAAGACAGTCCCTGATACCCAGAGTTTACTGCCTAAGAGAGGATACATCCTTCAAACCAATAATCTGCTAATAGC...TGATACGACCTCAGACCCAGCAAGAGCTCAG___TGCAGCCCGGAGAGCTGTGAGCAGTGCCACAGGAGGAGATGACTGGTGAGTGAAATAAGCAAGATAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 3554 ENSG00000286239::WDFY1 ENSG00000286239.1::ENSG00000085449.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 609 TRUE 217 ENSG00000286239 ENSG00000286239.1 protein_coding - - chr2:223757258-223945299:- chr2:223894234:- chr2:224621975-224810016:- chr2:224758951:- WDFY1 ENSG00000085449.15 protein_coding - - chr2:223855716-223945357:- chr2:223918010:- chr2:224720433-224810074:- chr2:224782727:- chr2:223888731,chr2:223888734 chr2:223928932,chr2:223928935 NA NA chr2:224753448,chr2:224753451 chr2:224793649,chr2:224793652 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |FYVE_zinc_finger(100%),WD_domain__G-beta_repeat(75%) WD40(96%)|FYVE(100%),WD40(27%) 8 6 7 730 499 ENST00000650969.1 ENST00000233055.9 upstream downstream duplicates(3) GTAGTGTCGCCTGCCTCTGGTGGGACCCTATTCAGCGGTTACTCTTCTCAGGAGCATCTGACAACAGCATCATCATGTGGGACATCGGAGGAAGGAAAGGCCGGACGCTGTTACTTCAGGGCCATCA___TGACAAGGTGCAGTCGCTGTGCTACCTTCAGCTCACCAGGCAGCTCGTCTCCTGTTCCTCGGACGGCGGAATTGCAGTGTGGAACATGGATGTTAGCAGAGAAGAG|AACCATCCGGGTATGGCTGAAAAGAGACAGTGGTCAATACTGGCCCAGCATTTACCACACAATGGCCT___CTCCTTGCTCTGCTATGGCTTACCATCATGACAGCAGACGGATATTTGTGGGCCAGGATAATGGAGCTGTAATGG...TTCTGAAGATTTTAATAAAATGAACTTTATCAAGACCTACCCAG___CTCATCAGAACCGGGTGTCTGCGATTATCTTCAGCTTGGCCACAGAGTGGGTGATCAGTACCGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGGAGCGGGAACATGCTCGGGAGGCACTTCTTCACGTCCTGGGCTTCGTGTCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3555 ENSG00000286239::WDFY1 ENSG00000286239.1::ENSG00000085449.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 609 TRUE 217 ENSG00000286239 ENSG00000286239.1 protein_coding - - chr2:223757258-223945299:- chr2:223898958:- chr2:224621975-224810016:- chr2:224763675:- WDFY1 ENSG00000085449.15 protein_coding - - chr2:223855716-223945357:- chr2:223918010:- chr2:224720433-224810074:- chr2:224782727:- chr2:223888731,chr2:223888734 chr2:223928932,chr2:223928935 NA NA chr2:224753448,chr2:224753451 chr2:224793649,chr2:224793652 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication low none |FYVE_zinc_finger(100%),WD_domain__G-beta_repeat(75%) WD40(83%)|FYVE(100%),WD40(27%) 0 1 0 456 499 ENST00000650969.1 ENST00000233055.9 upstream downstream none CACAACCCTCAAAGGACATGAAG|AACCATCCGGGTAgGGCTGAAAAGAGACAGTGGTCAATACTGGCCCAGCATTTACCACACAATGGCCT___CTCCTTGCT...GCACGCGGAGCGGGAAgATGCTCGGGAGGCACTTCTTCACGTCCTGGGCTTCGTGTCTGCA___ATATGACTTTGACACTCAGTATGCTTTCGTTGGTGATTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3556 WDFY1::ENSG00000286239 ENSG00000085449.15::ENSG00000286239.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 610 TRUE 218 WDFY1 ENSG00000085449.15 protein_coding - - chr2:223855716-223945357:- chr2:223894234:- chr2:224720433-224810074:- chr2:224758951:- ENSG00000286239 ENSG00000286239.1 protein_coding - - chr2:223757258-223945299:- chr2:223918010:- chr2:224621975-224810016:- chr2:224782727:- chr2:223888731,chr2:223888734 chr2:223928932,chr2:223928935 NA NA chr2:224753448,chr2:224753451 chr2:224793649,chr2:224793652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none WD_domain__G-beta_repeat(84%)| WD40(98%)|Clat_adaptor_s(100%),FYVE(100%),WD40(28%) 9 5 7 730 499 ENST00000233055.9 ENST00000650969.1 upstream downstream duplicates(3) GTAGTGTCGCCTGCCTCTGGTGGGACCCTATTCAGCGGTTACTCTTCTCAGGAGCATCTGACAACAGCATCATCATGTGGGACATCGGAGGAAGGAAAGGCCGGACGCTGTTACTTCAGGGCCATCA___TGACAAGGTGCAGTCGCTGTGCTACCTTCAGCTCACCAGGCAGCTCGTCTCCTGTTCCTCGGACGGCGGAATTGCAGTGTGGAACATGGATGTTAGCAGAGAAGAG|AACCATCCGGGTATGGCTGAAAAGAGACAGTGGTCAATACTGGCCCAGCATTTACCACACAATGGCCT___CTCCTTGCTCTGCTATGGCTTACCATCATGACAGCAGACGGATATTTGTGGGCCAGGATAATGGAGCTGTAATGG...TTCTGAAGATTTTAATAAAATGAACTTTATCAAGACCTACCCAG___CTCATCAGAACCGGGTGTCTGCGATTATCTTCAGCTTGGCCACAGAGTGGGTGATCAGTACCGGCCACGACAAGTGTGTGAGCTGGATGTGCACGCGGAGCGGGAACATGCTCGGGAGGCACTTCTTCACGTCC SVACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREE|nhpgmaekrqwsilaqhlphnglsllcyglps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3557 WDFY1::ENSG00000286239 ENSG00000085449.15::ENSG00000286239.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 610 TRUE 218 WDFY1 ENSG00000085449.15 protein_coding - - chr2:223855716-223945357:- chr2:223898958:- chr2:224720433-224810074:- chr2:224763675:- ENSG00000286239 ENSG00000286239.1 protein_coding - - chr2:223757258-223945299:- chr2:223918010:- chr2:224621975-224810016:- chr2:224782727:- chr2:223888731,chr2:223888734 chr2:223928932,chr2:223928935 NA NA chr2:224753448,chr2:224753451 chr2:224793649,chr2:224793652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none WD_domain__G-beta_repeat(35%)| WD40(85%)|Clat_adaptor_s(100%),FYVE(100%),WD40(28%) 0 1 0 456 499 ENST00000233055.9 ENST00000650969.1 upstream downstream none CACAACCCTCAAAGGACATGAAG|AACCATCCGGGTAgGGCTGAAAAGAGACAGTGGTCAATACTGGCCCAGCATTTACCACACAATGGCCT___CTCCTTGCT...GCACGCGGAGCGGGAAgATGCTCGGGAGGCACTTCTTCACGTCCTGGGCTTCGTGTCTGCA___ATATGACTTTGACACTCAGTATGCTTTCGTTGGTGATTAT TTLKGHE|epsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3560 SOX9-AS1::VMP1 ENSG00000234899.11::ENSG00000062716.13 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 313 TRUE 611 TRUE 219 SOX9-AS1 ENSG00000234899.11 lncRNA - - chr17:72067099-72237203:- chr17:72120763:- chr17:70063240-70233344:- chr17:70116904:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:72117711,chr17:72117717 chr17:59746745,chr17:59746739 NA NA chr17:70113852,chr17:70113858 chr17:57824106,chr17:57824100 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |SNARE_associated_Golgi_protein(100%) none 0 9 0 6 568 ENST00000662263.1 ENST00000262291.9 upstream upstream duplicates(2) GGGGAAGGCGGGGGACCCGGGACTTCCAAGTGT|GGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGG___GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3561 SOX9-AS1::VMP1 ENSG00000234899.11::ENSG00000062716.13 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 611 TRUE 219 SOX9-AS1 ENSG00000234899.11 lncRNA - - chr17:72067099-72237203:- chr17:72118272:- chr17:70063240-70233344:- chr17:70114413:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:72117711,chr17:72117717 chr17:59746745,chr17:59746739 NA NA chr17:70113852,chr17:70113858 chr17:57824106,chr17:57824100 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |SNARE_associated_Golgi_protein(100%) none 1 2 1 3 568 ENST00000529667.1 ENST00000262291.9 upstream upstream none GGAAGGCGGGGGACCCGGGACTTCCAAGTGT___GTCGCCCCGACCCCTCCTCCCTGACCTGGGAAGACGCGCGCAGTCCCCGACCAGAGGACCTCAGACACAG|GGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGG...ATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3563 MYO1D::ENSG00000276241 ENSG00000176658.17::ENSG00000276241.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 612 TRUE 220 MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32605087:- chr17:30819540-31204195:- chr17:30932105:- ENSG00000276241 ENSG00000276241.1 lncRNA + + chr17:36116177-36177510:+ chr17:36135151:+ chr17:34443570-34504870:+ chr17:34462531:+ chr17:32541998,chr17:32542004 chr17:36134848,chr17:36134842 NA NA chr17:30869016,chr17:30869022 chr17:34462228,chr17:34462222 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%),Unconventional_myosin_tail__actin-_and_lipid-binding(83%)| IQ(100%),Myosin_TH1(30%),Myosin_head(100%)| 2 1 3 756 5 ENST00000318217.10 unknown upstream upstream mismatches(1) CTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAAT___TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAG|AAGATCTTCCCAGTACATTGCTGTGTGAGTGTTGTGTCTGCAGCCCCAACTGCCTGCCCAAGGAAAAG...ATATAGAACAAAGAGATGGTAAAACTTGCTCATAATCTCATTACCAGCAGATAAATATAGTTACATGTTTTGTCACGTCCTTTCATACTTTGATCCATGGG KQYKVMKTIPLYNLTGLSVSNGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKr|rssqyiav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3564 MYO1D::ENSG00000276241 ENSG00000176658.17::ENSG00000276241.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 612 TRUE 220 MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32605087:- chr17:30819540-31204195:- chr17:30932105:- ENSG00000276241 ENSG00000276241.1 lncRNA + + chr17:36116177-36177510:+ chr17:36147580:+ chr17:34443570-34504870:+ chr17:34474961:+ chr17:32541998,chr17:32542004 chr17:36134848,chr17:36134842 NA NA chr17:30869016,chr17:30869022 chr17:34462228,chr17:34462222 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%),Unconventional_myosin_tail__actin-_and_lipid-binding(83%)| IQ(100%),Myosin_TH1(30%),Myosin_head(100%)| 1 0 2 756 3 ENST00000318217.10 ENST00000617914.1 upstream upstream mismatches(1) ATCCCTCTATACAAT___TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAG|GCATCTGTGTGCACCAATGCAGAAAAGACGGGGACTACAAGGAAGGAAAATGTTGCATCAGGAAGGGCTGCTGGCACATCTTTGTTCCCCCTCCCCAAAACCTCATCCCC IPLYNLTGLSVSNGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKr|hlcapmqkrrglqgrkmlhqegllahlcspspkphp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3565 MYO1D::ENSG00000289485 ENSG00000176658.17::ENSG00000289485.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32605087:- chr17:30819540-31204195:- chr17:30932105:- ENSG00000289485 ENSG00000289485.1 lncRNA - + chr17:36116854-36149080:- chr17:36135151:+ chr17:34444247-34476462:- chr17:34462531:+ chr17:32541998,chr17:32542004 chr17:36134848,chr17:36134842 NA NA chr17:30869016,chr17:30869022 chr17:34462228,chr17:34462222 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%),Unconventional_myosin_tail__actin-_and_lipid-binding(83%)| IQ(100%),Myosin_TH1(30%),Myosin_head(100%)| 2 1 3 756 5 ENST00000318217.10 unknown upstream upstream duplicates(1) CTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAAT___TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAG|AAGATCTTCCCAGTACATTGCTGTGTGAGTGTTGTGTCTGCAGCCCCAACTGCCTGCCCAAGGAAAAG___TGATGACCGTGCAGGCGGAAGCACAGACCTTT...ATATAGAACAAAGAGATGGTAAAACTTGCTCATAATCTCATTACCAGCAGATAAATATAGTTACATGTTTTGTCACGTCCTTTCATACTTTGATCCATGGG KQYKVMKTIPLYNLTGLSVSNGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKr|rssqyiav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3572 ADIPOR2::ENSG00000287698 ENSG00000006831.10::ENSG00000287698.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 614 TRUE 221 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691191:+ chr12:1797740-1897840:+ chr12:1800357:+ ENSG00000287698 ENSG00000287698.1 lncRNA + + chr12:1800862-1807486:+ chr12:1807130:+ chr12:1910028-1916652:+ chr12:1916296:+ chr12:1734297,chr12:1734298 chr12:1804617,chr12:1804615 NA NA chr12:1843463,chr12:1843464 chr12:1913783,chr12:1913781 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through medium none none none 0 3 1 208 31 ENST00000357103.5 ENST00000668721.1 downstream upstream mismatches(1) CGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCG|GTTTCAAAAGACTGTGACTTCCACCTTGGTTTGCTCGGTCTGATGAAGGAACTTTGAGCTGTGAGCTGCACTGTGAACTTTGCTGTGAGCTGCCCTGTGATGGGAGAGGAGGCCTCCGCCTCACAGCCCTGGAGGACCTCAATGCTGCCAACGTGTGACCAGATGCAG...GCCTGGACATGACATGACAGCAGCCCTGGGGACCTTGATGCTGTGGCCTGTGCAAGACCCTGAGCCAGCCGCACCCAGATCCCTCACCCACAGAAACTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3573 ADIPOR2::ENSG00000287698 ENSG00000006831.10::ENSG00000287698.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 614 TRUE 221 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ ENSG00000287698 ENSG00000287698.1 lncRNA + + chr12:1800862-1807486:+ chr12:1806291:+ chr12:1910028-1916652:+ chr12:1915457:+ chr12:1734297,chr12:1734298 chr12:1804617,chr12:1804615 NA NA chr12:1843463,chr12:1843464 chr12:1913783,chr12:1913781 NA NA sense sense unknown exon/splice-site exon/splice-site deletion/read-through medium none none none 1 1 2 207 14 ENST00000357103.5 ENST00000668721.1 downstream upstream mismatches(1) CGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|GCCCCACATCGAGGGTTGCAATCTTGTCATCCATAACTCTTATAAGAATGAGCCCTGGCCTGGAAGAGAGGCCAAAT...GAGGCCCTTGTGGTTTCCCCACTCACTGACTACGGGGAGGAGGGTGTGCAAGGACTTTGTCTGGGAAGAATCTTTGCATCTGTAGCTCAACAGGCTTCTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3574 ADIPOR2::ENSG00000287698 ENSG00000006831.10::ENSG00000287698.1 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 614 TRUE 221 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ ENSG00000287698 ENSG00000287698.1 lncRNA + + chr12:1800862-1807486:+ chr12:1807130:+ chr12:1910028-1916652:+ chr12:1916296:+ chr12:1734297,chr12:1734298 chr12:1804617,chr12:1804615 NA NA chr12:1843463,chr12:1843464 chr12:1913783,chr12:1913781 NA NA sense sense unknown exon/splice-site exon/splice-site deletion/read-through medium none none none 1 1 1 207 31 ENST00000357103.5 ENST00000668721.1 downstream upstream mismatches(1) CGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCG?TCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|GTTTCAAAAGACTGTGACTTCCACCTTGGTTTGCTCGGTCTGATGAAGGAACTTTGAGC...GAGCTGCACTGTGAACTTTGCTGTGAGCTGCCCTGTGATGGGAGAGGAGGCCTCCGCCTCACAGCCCTGGAGGACCTCAATGCTGCCAACGTGTGACCAGATGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3588 ST6GALNAC4::EEIG1 ENSG00000136840.19::ENSG00000167106.12 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ST6GALNAC4 ENSG00000136840.19 protein_coding - - chr9:127907886-127917041:- chr9:127912268:- chr9:130670165-130679320:- chr9:130674547:- EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127950539:- chr9:130702861-130743268:- chr9:130712818:- chr9:127911505,chr9:127911507,chr9:127911509 chr9:127951609,chr9:127951608,chr9:127951608 NA NA chr9:130673784,chr9:130673786,chr9:130673788 chr9:130713888,chr9:130713887,chr9:130713887 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Glycosyltransferase_family_29_(sialyltransferase)(61%)|N-terminal_C2_in_EEIG1_and_EHBP1_proteins(36%) Glyco_transf_29(38%)|NT-C2(6%) 0 3 2 415 426 ENST00000335791.10 ENST00000373095.6 upstream downstream mismatches(1) CGGCGGATCGCGAGCCTCCTGCGAACCCCAGCCTGCACGCCCG___...TCTACATGG?GTGGGGCCAGGGCAGGCACATGGACCGGGTGCTCG?CG??CGC?CCTACCGCACGCTG???CAG??CAC...___GTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACCG|CTGGGCTTCGCTGACTTGAACCTGGCCGAGTTTGCGGGCTCGGGCTCCACGGTGCGCTGCTGCCTGCTCGAGGGATATGACACGAAGAACACTCGCCAGGACAACTCCATCCTTAAG___GTCACCATTGGTATGTTCCTGCTCTCTGGAGATCCCTGCTTCAAGAC___GCCACCATCGACTaCC...GGTCCCGGCCCCCCAAGGCTCGGCCCACTATTCTCAGCTCAG___GGCTGCCAGAGGAACCCGACCAGAACCTGTCCAGCCCTGAGGAGGTGTTCCACTCTGGC VYTFTERMMAYCDQIFQDETGKNr|waslt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3590 IRAG2::DNAI7 ENSG00000118308.16::ENSG00000118307.20 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25069431:+ chr12:25157276-25261269:+ chr12:25222365:+ DNAI7 ENSG00000118307.20 protein_coding - - chr12:25108289-25195162:- chr12:25114870:- chr12:25261223-25348096:- chr12:25267804:- chr12:25070785 chr12:25119964 NA NA chr12:25223719 chr12:25272898 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Coiled-coil_region_of_CCDC155_or_KASH(100%),EF-hand_domain(100%),MRVI1_protein(7%)| EF-hand_9(100%),KASH_CCD(100%),MRVI1(7%)|Casc1_C(100%) 1 1 2 2645 58 ENST00000636465.1 ENST00000395987.8 downstream downstream none CTGGTACACACCTCTGCTGG___ATGCCTTATCTCTGGATAGTTTTACAGCAGTTCCAACCCTGGAATCAACACCTTTCTCAGGTGTAGCCAACCAAATCCACA...GAAAGGCCCACATATGGAGAAGTAAAGGATGGTGCTTTGGATGTAAAAAGACAACACAA___GTGCCCAGGCCCCACAAGTGGCCCCAGCCCAGGAACGAATCTCTCAGGCTGCATCAGGATGAATGATGACCCAAGTATGGAA|GTAAACATTGGAGAACTGATGGCATCAGCAATGTATCCTACAAACCAAAAGAAAGACTTGTAACATTCAGCCTGGACACCTTTGGCCCTGTTACCTTGATTCAAGATGCTCATATTAACATGCCGTACCAGTCATGGGAACTAAGACCACTTGATGTAAATAAAGTACTTTTAACTGTGAC ERPTYGEVKDGALDVKRQHKCPGPTSGPSPGTNLSGCIRMNDDPSME|vnigelmasamyptnqkkdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3607 CRLF3::SUZ12 ENSG00000176390.12::ENSG00000178691.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30784307:- chr17:29096406-29151710:- chr17:29111325:- SUZ12 ENSG00000178691.11 protein_coding + + chr17:31937007-32001038:+ chr17:31976521:+ chr17:30264026-30328057:+ chr17:30303540:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low none |VEFS-Box_of_polycomb_protein(100%) |VEFS-Box(100%) 0 1 0 67 970 ENST00000583527.1 ENST00000322652.10 upstream upstream none CGTGACTCTAGGAACCACCAGTAATAATGAAGGTGGACACTTCAAGCTTCGA|ATGTCAATGAAGAGCTTCCAGCCAGAAGAAAACGAAATCGTGAGGATGG...GAGAGTCTCCATCAGGAAAACAAGCCTGGTTCAGTTAAACCTACTCAAACTATTG___CTGTTAAAGAATCATTGACTACAGATCTACAAACAAGAAAAGAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of zeste 12 homolog (Drosophila) 1 Yes endometrial stromal tumour mesenchymal oncogene, TSG, fusion translocation 3615 SLC30A7::LINC02664 ENSG00000162695.12::ENSG00000272381.2 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 616 TRUE 222 SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100906965:+ chr1:101361632-101447313:+ chr1:101372521:+ LINC02664 ENSG00000272381.2 lncRNA + + chr10:31187715-31261910:+ chr10:31212685:+ chr10:31476644-31550839:+ chr10:31501614:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Cation_efflux_family(23%)| Cation_efflux(15%)| 44 18 74 118 97 ENST00000370112.8 unknown downstream upstream duplicates(6),low_entropy(1),mismappers(1),mismatches(8) TGTCACTGCCATCACCCCACGGAGCCACTTCTAGAGGGGAGTAGACCCGGCCCTTCGCCGGGCAGAGAAGATGTTGCCCCTGTCCATCAAAGACGATGAATACAAACCACCCAAGTTCAATTTGTTCGGCAAGATCTCGGGCTGGTTTAG___GTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTCTTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTG___CTTAGGCTTGATTTCCGACTCTTTTCACATGTTTTTCGATAGCACTGCCATTTTGGCTGGACTGGCAGCTTCTGTTATTTCAAAATGGAGAGATAATGATGCTTTCTCCTATGG|AGTCCAAAAGGGCCACAGTAATGGGAGGCTGGAGATGCAGGAGCCAGACCCTGAGGGCCTGAGACCATTGCAAGGACTTGGGCTTTGCCTGTCGGTGAGATGGGGCAGAAGCAGGTTTTGCTGAGAAGTGACACCGCCTGACTCACATATTAACAAGATCTCTCTGGCTGCTGTGCTGACAATAGATTCTAGATCCACAAGGGGAAGCAGGGACACCCTTGACGGGGGTGAACTGCGACCTCTTCTTGAGAGGTGAGGGCAGTTTGG MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYg|vqkghsngrlemqepdpeglrplqglglclsvrwgrsrfc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3616 SLC30A7::LINC02664 ENSG00000162695.12::ENSG00000272381.2 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 616 TRUE 222 SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100896671:+ chr1:101361632-101447313:+ chr1:101362227:+ LINC02664 ENSG00000272381.2 lncRNA + + chr10:31187715-31261910:+ chr10:31259982:+ chr10:31476644-31550839:+ chr10:31548911:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cation_efflux_family(9%)| Cation_efflux(0%)| 12 2 13 324 20 ENST00000370112.8 ENST00000669722.1 downstream upstream duplicates(2),mismatches(1) GTGTCTGTCTGTGTCTCGCAGCGGCGCGCGGCCCCGGACAAGCGCTGGGGATTCCCGTTTGAGGCGTCACTACTGTCACTGCCATCACCC...TTCGCCGGGCAGAGAAGATGTTGCCCCTGTCCATCAAAGACGATGAATACAAACCACCCAAGTTCAATTTGTTCGGCAAGATCTCGGGCTGGTTTAG___GTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTCTTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTG|GTCTTCGCTGAAACATGGGCACTCGTGGGAAGTGCTTTCTGTTCCCCAGGCTCAG___AGACAGGTCTCCCTATGGTGTTGCCCAGGCTGGTCTTGAACTCCTAGCCTCAAGTGATCCTCCTGCTTCAGCCTGCCAAAGTGCTGGATTACAGGTGTAAGCCACCTCTGG MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNw|sslkhghswevlsvpqaqrqvslwccpgws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3617 SLC30A7::LINC02664 ENSG00000162695.12::ENSG00000272381.2 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 616 TRUE 222 SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100896671:+ chr1:101361632-101447313:+ chr1:101362227:+ LINC02664 ENSG00000272381.2 lncRNA + + chr10:31187715-31261910:+ chr10:31248527:+ chr10:31476644-31550839:+ chr10:31537456:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cation_efflux_family(9%)| Cation_efflux(0%)| 0 2 13 324 5 ENST00000370112.8 ENST00000662544.1 downstream upstream duplicates(1) CACCCAAGTTCAATTTGTTCGGCAAGATCTCGGGCTGGTTTAG___GTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTCTTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTG|GTCTTTGAGGAATCACCACACTGTTTTCAACAATGGCTGAACTAATTCGCACTCCCACCAACAGTGT___GTCTTCGCTGAAAC PKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNw|slrnhhtvfnng* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3618 SLC30A7::LINC02664 ENSG00000162695.12::ENSG00000272381.2 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 616 TRUE 222 SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100896671:+ chr1:101361632-101447313:+ chr1:101362227:+ LINC02664 ENSG00000272381.2 lncRNA + + chr10:31187715-31261910:+ chr10:31260995:+ chr10:31476644-31550839:+ chr10:31549924:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense sense stop-codon CDS/splice-site exon/splice-site translocation high none Cation_efflux_family(9%)| Cation_efflux(0%)| 0 1 10 324 37 ENST00000370112.8 ENST00000669722.1 downstream upstream duplicates(1) CACCCAAGTTCAATTTGTTCGGCAAGATCTCGGGCTGGTTTAG___GTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTCTTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTG|AGACAGGTCTCCCTATGGTGTTGCCCAGGCTGGTCTTGAACTCCTAGCCTCAAGTGATCCTCCTGCTTCAGCCTGCCAAAGTGCTGGATTACAGGTGTAAGCCACCTCTGGACATCTTATCTGTGAAATTTTAGGCATTGATCAGTGCAGAAAGAACCATGAACTGCAGGATGTTCTCAGAGACTCTGACATTATGG...___TTATTTTCATATCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3619 SLC30A7::ZEB1-AS1 ENSG00000162695.12::ENSG00000237036.7 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100906965:+ chr1:101361632-101447313:+ chr1:101372521:+ ZEB1-AS1 ENSG00000237036.7 lncRNA - + chr10:31206278-31320447:- chr10:31212685:+ chr10:31495207-31609376:- chr10:31501614:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Cation_efflux_family(23%)| Cation_efflux(15%)| 44 18 63 118 97 ENST00000370112.8 unknown downstream upstream duplicates(5),low_entropy(1),mismappers(1),mismatches(8) TGTCACTGCCATCACCCCACGGAGCCACTTCTAGAGGGGAGTAGACCCGGCCCTTCGCCGGGCAGAGAAGATGTTGCCCCTGTCCATCAAAGACGATGAATACAAACCACCCAAGTTCAATTTGTTCGGCAAGATCTCGGGCTGGTTTAG___GTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTCTTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTG___CTTAGGCTTGATTTCCGACTCTTTTCACATGTTTTTCGATAGCACTGCCATTTTGGCTGGACTGGCAGCTTCTGTTATTTCAAAATGGAGAGATAATGATGCTTTCTCCTATGG|AGTCCAAAAGGGCCACAGTAATGGGAGGCTGGAGATGCAGGAGCCAGACCCTGAGGGCCTGAGACCATTGCAAGGACTTGGGCTTTGCCTGTCGGTGAGATGGGGCAGAAGCAGGTTTTGCTGAGAAGTGACACCGCCTGACTCACATATTAACAAGATCTCTCTGGCTGCTGTGCTGACAATAGATTCTAGATCCACAAGGGGAAGCAGGGACACCCTTGACGGGGGTGAACTGCGACCTCTTCTTGAGAGGTGAGGGCAGTTTGG MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYg|vqkghsngrlemqepdpeglrplqglglclsvrwgrsrfc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3620 CDC6::ENSG00000234477 ENSG00000094804.12::ENSG00000234477.1 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 314 FALSE NA FALSE NA CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40288090:+ chr17:38444131-38460909:+ chr17:38444342:+ ENSG00000234477 ENSG00000234477.1 lncRNA + + chr17:40921430-40975926:+ chr17:40975497:+ chr17:39077682-39132178:+ chr17:39131749:+ chr17:40288415,chr17:40288414 chr17:40949371,chr17:40949367 NA NA chr17:38444667,chr17:38444666 chr17:39105623,chr17:39105619 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 26 32 25 1606 86 ENST00000209728.9 ENST00000418393.1 downstream upstream duplicates(2),inconsistently_clipped(1),mismatches(19) AGTTTGCTGCTGCCGCTGTGCAGTTTGTTCAGGGGCTTGTGGTGGTGAGTCCGAGAGGCTGCGTGTGAGAGACGTGAGAAGGATCCTGCACTGAGGAGGTGGAAAGAAGAGGATTGCTCGAGGAGGCCTGGGGTCTGTGAGGCAGCGGAGCTGGGTGAAGGCTGCGGGTTCCGGCGAGGCCTGAG|GTCGGATGATGTCTATTATTGTATCATCAAATTCCCTGATGTTTTCCTCTCTGGCCTGCATTCTGCTGTTAAGCCCATCTCCATTGAGGTTTCTATTTTGGTTCTATG___ATATAACAGTGAGCCTGGAAAACTGGCCTGAATCAAATGAGAATTAAAACCTGCCAGAATGCTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3622 MLLT10::ENSG00000234810 ENSG00000078403.17::ENSG00000234810.4 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21726355:+ chr10:21813575-22032559:+ chr10:22015284:+ ENSG00000234810 ENSG00000234810.4 lncRNA + - chr1:55329288-56070513:+ chr1:56030624:- chr1:55794961-56536186:+ chr1:56496297:- chr10:21727193,chr10:21727194 chr1:56032861,chr1:56032860 NA NA chr10:22016122,chr10:22016123 chr1:56498534,chr1:56498533 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none PHD-finger(100%),PHD-zinc-finger_like_domain(100%)| PHD(100%),PHD_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)| 3 18 20 142 81 ENST00000631589.1 unknown downstream downstream duplicates(2),mismappers(16),mismatches(2) TCCTGTCTCCAGCTCTCACTTACCTCAGCAGTCTTCTGGGCATTTGCAACAAGTAGGAGCGCTCTCTCCCTCAGCTGTGTCATCTGCAGCCCCTGCTGTTGCTACAACTCAG___GCAAATACTCTATCTGGATCTTCTCTCAGTCAGGCACCATCTCATATGTATGGCAATAGATCAAATTCATCAATGGCAGCTCTTATAGCTCAGTCTGAAAACAATCAAACAG|GATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGATGCAATCATAGCTCACGGCAGCCTCAATCTCCCTGGCTCAAGCAATCATCCCACCTCAGCCTACCAAGTAACTGGGACTACAGGCATGTACCACCATGCCCAGCTATTTTTTAAAATTATGATTTGTAGAGATGGAGTCTCACTAGGTTGTCCAGGCTGGTCTCAAACTCCTGAGCTCAAGTGATCCTCCCATTTCAG...GTGCTGGGATTACAAGTGTAAAAATTATAATAATTT PVSSSHLPQQSSGHLQQVGALSPSAVSSAAPAVATTQANTLSGSSLSQAPSHMYGNRSNSSMAALIAQSENNQT|gshsvaqagvq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3624 PLPP3::MINDY4B ENSG00000162407.9::ENSG00000214237.11 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 617 TRUE 223 PLPP3 ENSG00000162407.9 protein_coding - - chr1:56494761-56645301:- chr1:56578878:- chr1:56960433-57110974:- chr1:57044551:- MINDY4B ENSG00000214237.11 protein_coding - - chr3:150870376-150905439:- chr3:150873367:- chr3:150588163-150623226:- chr3:150591154:- chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174 chr3:150880607,chr3:150880618,chr3:150880560,chr3:150880568,chr3:150880593,chr3:150880602,chr3:150880605 NA NA chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847 chr3:150598394,chr3:150598405,chr3:150598347,chr3:150598355,chr3:150598380,chr3:150598389,chr3:150598392 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Deubiquitinating_enzyme_MINDY-3/4__conserved_domain(29%) |DUF4205(9%) 3 4 0 10 8 ENST00000371250.4 ENST00000465419.7 upstream downstream none CGACAAAGCGATCGTCCCGGAGAGCAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAGGAGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTCGACCTCTTCTGCCTCTTCATGG|GTGGGCAGCATGCTGAAGACTCCCAAATTACCTATTTGGCTGTGCAACATCAATGGAAATTACAGCATCCTTTTTTGCACAAACAGGCAGCTCTTATCAGACTGGAAAATGGAACGTCTCTTTGATCTGTACTTTTACAGTGGCCAACCCTCACAGAAAAAGCTTGTGCGTCTTACAATAG___ATACTCACTCCCATCACTGGGAAAGAGACCAACAGGAAGAGAAACATGGACCAAGACGACGGTTTTCACCAGTGGAGATGGCAATCAGAACCAAGTGGAGCGAGGCCACCATCAAC DKAIVPESKNGGSPALNNNPRRSGSKRVLLICLDLFCLFM|ggqhaedsqitylavqhqwklqhpflhkqaalirlengtsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3625 PLPP3::MINDY4B ENSG00000162407.9::ENSG00000214237.11 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 617 TRUE 223 PLPP3 ENSG00000162407.9 protein_coding - - chr1:56494761-56645301:- chr1:56578878:- chr1:56960433-57110974:- chr1:57044551:- MINDY4B ENSG00000214237.11 protein_coding - - chr3:150870376-150905439:- chr3:150871187:- chr3:150588163-150623226:- chr3:150588974:- chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174,chr1:56563174 chr3:150880607,chr3:150880618,chr3:150880560,chr3:150880568,chr3:150880593,chr3:150880602,chr3:150880605 NA NA chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847,chr1:57028847 chr3:150598394,chr3:150598405,chr3:150598347,chr3:150598355,chr3:150598380,chr3:150598389,chr3:150598392 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Deubiquitinating_enzyme_MINDY-3/4__conserved_domain(11%) |DUF4205(0%) 1 0 0 10 4 ENST00000371250.4 ENST00000465419.7 upstream downstream none GCTCGCGCCGCAGCCAGCGCCATGCAAAACTACAAGTACGACAAAGCGATCGTCCCGGAGAGCAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAG...AAGCGGGTGCTGCTCATCTGCCTCGtCCTCTTCTGCCTCTTCATGG|ATACTCACTCCCATCACTGGGAAAGAGACCAACAGGAAGAGAAACATGGACCAAG KRVLLICLvLFCLFM|dTHSHHWERDQQEEKHGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3626 LASTR::ENSG00000258560 ENSG00000242147.3::ENSG00000258560.1 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 618 TRUE 224 LASTR ENSG00000242147.3 lncRNA - - chr10:5594984-5632566:- chr10:5610825:- chr10:5636947-5674529:- chr10:5652788:- ENSG00000258560 ENSG00000258560.1 lncRNA - - chr14:100052803-100074878:- chr14:100052990:- chr14:100519140-100541215:- chr14:100519327:- chr10:5606768,chr10:5606774 chr14:100057361,chr14:100057364 NA NA chr10:5648731,chr10:5648737 chr14:100523698,chr14:100523701 NA NA sense sense unknown exon/splice-site intron translocation high none none none 2 2 1 23 21 ENST00000674838.1 ENST00000554245.1 upstream downstream none CTGAGAGGCTGTCAGAGTGGTGAGTAGCCACTCATACCACCTGTCATCAGAGAATGAGGAGCGAGCAGGGGAGGGGCAGGCCGTGTGGCCTCCGGAGATGGCAGCAGACGGAGATCCGGGCAG|AGGTGAGTGCACTGCAAGAAGGTGGCCATCTGCAAGCCAGGAAGAGGGCCCTTGCCAGAAACTGAACTGCCTGGCaTCTTGATCTCGGACTTCCCAGCCTCCAGAACT___CTTTGAAAATCTACCATTCGGCCCTTTTAGTCTTTCCGGCTGATCTTTCCCATCCACAAACAGATGTTGCTCACTGGATTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3627 LASTR::ENSG00000258560 ENSG00000242147.3::ENSG00000258560.1 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 618 TRUE 224 LASTR ENSG00000242147.3 lncRNA - - chr10:5594984-5632566:- chr10:5611955:- chr10:5636947-5674529:- chr10:5653918:- ENSG00000258560 ENSG00000258560.1 lncRNA - - chr14:100052803-100074878:- chr14:100052988:- chr14:100519140-100541215:- chr14:100519325:- chr10:5606768,chr10:5606774 chr14:100057361,chr14:100057364 NA NA chr10:5648731,chr10:5648737 chr14:100523698,chr14:100523701 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 0 3 1 18 21 ENST00000665493.1 ENST00000554245.1 upstream downstream inconsistently_clipped(1) CCATTCTTCATGGCACAGCTGTCGCCTTCCTGAAACTCACATTAGACACGCGCTCATAGAATCAAATGTACCACATGCAGCCATTACAGACGGGCACACCAACCCCAGACTGCTGTTGCCAG|GTGAGTGCACTGCAAGAAGGTGGCCATCTGCAAGCCAGGAAGAGGGCCCTTGCCAGAAACTGAACTGCCTGGCaTCTTGATCTCGGACTTCCCAGCCTCCAGAACT___CTTTGAAAATCTACCATTCGGCCCTTTTAGTCTTTCCGGCTGATCTTTCCCATCCACAAACAGATGTTGCTCACTGGATTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3668 RNASEH2A::GET3 ENSG00000104889.7::ENSG00000198356.12 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 315 FALSE NA FALSE NA RNASEH2A ENSG00000104889.7 protein_coding + + chr19:12806584-12813640:+ chr19:12807506:+ chr19:12917398-12924454:+ chr19:12918320:+ GET3 ENSG00000198356.12 protein_coding + + chr19:12737139-12748323:+ chr19:12745377:+ chr19:12847953-12859137:+ chr19:12856191:+ chr19:12807791 chr19:12743346 NA NA chr19:12918605 chr19:12854160 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ribonuclease_HII(50%)|Anion-transporting_ATPase(78%) RNase_HII(11%)|AAA_31(3%),ArsA_ATPase(25%),CbiA(19%) 214 122 195 1404 1632 ENST00000221486.6 ENST00000591090.5 downstream upstream duplicates(46),hairpin(1),inconsistently_clipped(2),mismatches(28) TCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGCATGCTTGGGCG___GGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAG|GAGATTGACCCCAGCCTGGGCGTGGCGGAGCTGCCTGACGAGTTCTTCGAGGAGGACAACATGCTGAGCATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCATTTCCCGGCATCGATGAGGCCATGAGCTATGCCGAGGTCATGAG___GCTGGTGAAGGGCATGAACTTCTCGGTGGTGGTATTTGACACGGCACCCACGGGCCACACCCT SKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQ|EIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3669 THSD8::GET3 ENSG00000284491.3::ENSG00000198356.12 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA THSD8 ENSG00000284491.3 protein_coding + + chr19:12802031-12813581:+ chr19:12807506:+ chr19:12912845-12924395:+ chr19:12918320:+ GET3 ENSG00000198356.12 protein_coding + + chr19:12737139-12748323:+ chr19:12745377:+ chr19:12847953-12859137:+ chr19:12856191:+ chr19:12807791 chr19:12743346 NA NA chr19:12918605 chr19:12854160 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |Anion-transporting_ATPase(78%) RNase_HII(11%),TSP_1(100%)|AAA_31(3%),ArsA_ATPase(25%),CbiA(19%) 63 121 39 1404 1632 ENST00000639767.2 ENST00000591090.5 downstream upstream duplicates(18),hairpin(1),inconsistently_clipped(2),mismatches(13) GCATGGATCTCAGCGAGCTGGAGAGAGACAATACAGGCCGCTGTCGCCTGAGTTCGCCTGTGCCCGCGGTGTGCCGCAAGGAGCCTTGCGTCCTGGGCGTCG...CTCAAAGACCCTATTGGAGAGCGAGCGGGAAAGGCTGTTTGCGAAAATGGAGGACACGGACTTTGTCGGCTGGGCGCTGGATGTGCTGTCTCCAAACCTCATCTCTACCAGCATGCTTGGGCGG...___GGTCAAATACAACCTGAACTCCCTGTCACATGATACAGCCACTGGGCTTATACAGTATGCATTGGACCAGGGCGTGAACGTCACCCAG|GAGATTGACCCCAGCCTGGGCGTGGCGGAGCTGCCTGACGAGTTCTTCGAGGAGGACAACATGCTGAGCATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCATTTCCCGGCATCGATGAGGCCATGAGCTATGCCGAGGTCATGAG___GCTGGTGAAGGGCATGAACTTCTCGGTGGTGGTATTTGACACGGCACCCACGGGCCACACCCTGAGGCTGCTCAACTTCCCCACCATCGTGGAGCGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3670 CAPZB::TMCO4 ENSG00000077549.19::ENSG00000162542.14 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 629 TRUE 225 CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19419661:- chr1:19665269-19812033:- chr1:19746155:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19700885:- chr1:20008733-20126438:- chr1:20027378:- chr1:19388706,chr1:19388708,chr1:19388708 chr1:19725758,chr1:19725757,chr1:19725755 NA NA chr1:19715200,chr1:19715202,chr1:19715202 chr1:20052251,chr1:20052250,chr1:20052248 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none F-actin_capping_protein__beta_subunit(10%)|Protein_of_unknown_function_(DUF726)(29%) F_actin_cap_B(0%)|DUF726(27%) 37 22 45 3473 204 ENST00000264202.8 ENST00000294543.11 upstream downstream duplicates(11),low_entropy(1),mismatches(10) GAAGCGCCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATG___AGTGATCAGCAGCTGGACTGTGCCTTGGACCTAATGAGGCGCCTGCCTCCCCAGCAAATCGAGAAAAACCTCAGCGACCTGATCGACCTG|ATTGCCAAGGAATCATCGAGGACGTCATCCTGCTGGGTGCGCCTGTGGAGGGAGAAGCCAAGCATTGGGAGCCTTTCCGGAAGGTGGTGTCCGGGAGGATCATCAACGGCTACTGCAG___GGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCCTCGGTGCAGCTCCacGTCGCCGGCCTACAGCCCGTGCTGCTGCAGGACAGGAGG MSDQQLDCALDLMRRLPPQQIEKNLSDLIDL|iakessrtsscwvrlwrekpsigslsgrwcpggsstatagetgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Stomach,Ovary no_match TRUE Uterine Carcinosarcoma UTERUS no_match 19811930|19810684 FALSE|FALSE 20027378|20027378 TRUE|TRUE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3671 CAPZB::TMCO4 ENSG00000077549.19::ENSG00000162542.14 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 629 TRUE 225 CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19412236:- chr1:19665269-19812033:- chr1:19738730:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19700885:- chr1:20008733-20126438:- chr1:20027378:- chr1:19388706,chr1:19388708,chr1:19388708 chr1:19725758,chr1:19725757,chr1:19725755 NA NA chr1:19715200,chr1:19715202,chr1:19715202 chr1:20052251,chr1:20052250,chr1:20052248 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none F-actin_capping_protein__beta_subunit(10%)|Protein_of_unknown_function_(DUF726)(29%) F_actin_cap_B(9%)|DUF726(27%) 2 1 46 7 204 ENST00000264202.8 ENST00000294543.11 upstream downstream duplicates(8),mismatches(6) CCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATG___AGTGATCAGCAGCTGGACTGTGCCTTGGACCTAATG...GTTTTCTCCTCTGAGCCGAATGTTATCTCTGGAGCAGGAGCCGCGGAATGGATGGAATCACTG|ATTGCCAAGGAATCATCGAGGACGTCATCCTGCTGGGTGCGCCTGTGGAGGGAGAAGCCAAGCATTGGGAGCCTTTCCGGAAGGTGGTGTCCGGGAGGATCATCAACGGCTACTGCAG___GGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCCTCGGTGCAGCTCCacGTCGCCGGCCTACAGCCCGTGCTGCTGCAGGACAGGAGGGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Stomach,Ovary no_match TRUE Uterine Carcinosarcoma UTERUS no_match 19811930|19810684 FALSE|FALSE 20027378|20027378 TRUE|TRUE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3672 CAPZB::TMCO4 ENSG00000077549.19::ENSG00000162542.14 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 629 TRUE 225 CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19419661:- chr1:19665269-19812033:- chr1:19746155:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19694551:- chr1:20008733-20126438:- chr1:20021044:- chr1:19388706,chr1:19388708,chr1:19388708 chr1:19725758,chr1:19725757,chr1:19725755 NA NA chr1:19715200,chr1:19715202,chr1:19715202 chr1:20052251,chr1:20052250,chr1:20052248 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none F-actin_capping_protein__beta_subunit(10%)|Protein_of_unknown_function_(DUF726)(17%) F_actin_cap_B(0%)|DUF726(17%) 1 0 20 3473 263 ENST00000264202.8 ENST00000294543.11 upstream downstream duplicates(1),mismatches(3) GTGGAAGCGCCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATG___AGTGATCAGCAGCTGGACTGTGCCTTGGACCTAATGAGGCGCCTGCCTCCCCAGCAAATCGAGAAAAACCTCAGCGACCTGATCGACCTG|GGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCCTCGGTGCAGCTCCacGTCGCCGGCCTACAGCCCGTGCTGCTGCAGGACAGGAGGGTGGAGAACGTGGACCTGACCTCTGTG___GTCAGCGGCCACCTGGACTATGCCAAGCAGATGGATGCCATCCTGAAGGCCGTGGGCATCCGCACCA MSDQQLDCALDLMRRLPPQQIEKNLSDLIDL|grlaaefrvphilgaaprrrptaraaagqeggergpdlcgqrppglcqadgchpegrghph NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Stomach,Ovary no_match TRUE Uterine Carcinosarcoma UTERUS no_match 19811930|19810684 FALSE|FALSE 20027378|20027378 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3676 SLC25A46::CHSY3 ENSG00000164209.17::ENSG00000198108.4 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A46 ENSG00000164209.17 protein_coding + + chr5:110738136-110765161:+ chr5:110748263:+ chr5:110073837-110100861:+ chr5:110083964:+ CHSY3 ENSG00000198108.4 protein_coding + + chr5:129904465-130186634:+ chr5:130184229:+ chr5:129240158-129522327:+ chr5:129519922:+ chr5:110753867,chr5:110753867 chr5:130100379,chr5:130100376 NA NA chr5:110089567,chr5:110089567 chr5:129436072,chr5:129436069 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Chondroitin_N-acetylgalactosaminyltransferase(93%) |CHGN(0%),Fringe(0%),Glyco_transf_7C(100%) 2 1 0 177 11 ENST00000355943.8 ENST00000305031.5 downstream upstream mismatches(1) CAAAACTCAG___GGACCTAGAGCCCTGTGGAAAGGAATGGGAAGTACATTTATTGTCCAGGGAGTCACACTTGGAGCAGAAGGCATAATTAGTGAATTTACACCTTTGCCAAG|ATGCAACAACTGTTCCATGAAAATTATGAACACAATCGGAAGGGTTACATCCAAG...AGGCCTGCATACCAATACAGGCTGCATAATTACATGCTCAGCCGCAAAATTTCTGAACTTCGCTACCGCACCATCCAGCTCCACAGGGAAAGTGCCCTGAT KTQGPRALWKGMGSTFIVQGVTLGAEGIISEFTPLPr|cnncsmkimntigrvts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3682 VDAC2::SAMD8 ENSG00000165637.14::ENSG00000156671.15 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VDAC2 ENSG00000165637.14 protein_coding + + chr10:75210154-75231448:+ chr10:75222402:+ chr10:76969912-76991206:+ chr10:76982160:+ SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75181939:+ chr10:76859344-76941881:+ chr10:76941697:+ chr10:75225107,chr10:75225108 chr10:75177343,chr10:75177341 NA NA chr10:76984865,chr10:76984866 chr10:76937101,chr10:76937099 NA NA sense sense out-of-frame CDS/splice-site 3'UTR duplication medium none Eukaryotic_porin(84%)| Porin_3(54%)| 13 1 3 3100 82 ENST00000543351.5 ENST00000671730.1 downstream upstream none AGGACTGGGGACTTCCAGCTACACACTAATGT___CAATGATGGGACAGAATTTGGAGGATCAATTTATCAGAAAGTTTGTGAAGATCTTGACACTTCAGTAAACCTTGCTTGGACATCAGGTACCAACTGCACTCGTTTTGGCATTGCAGCTAAATATCAGTTGGATCCCACTGCTTCCATTTCT|AGAAACTAGTATTACTTGAAGATGTGAAAGTTCCTGTGGTAGCCATACCTTGAAGCACAGTGTTTGTACATAAGTAAATATCTTGATTCTAAATTAAATCCAG RTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASIS|rn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3714 SIN3A::MAP3K5 ENSG00000169375.17::ENSG00000197442.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 319 TRUE 635 TRUE 226 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75451423:- chr15:75661720-75748183:- chr15:75743764:- MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136567874:- chr6:136878184-137114235:- chr6:136889012:- chr15:75432638,chr15:75432990,chr15:75432992 chr6:136568499,chr6:136568499,chr6:136568498 NA NA chr15:75724979,chr15:75725331,chr15:75725333 chr6:136889637,chr6:136889637,chr6:136889636 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 17 29 22 141 80 ENST00000394947.8 ENST00000698928.1 upstream downstream duplicates(2),mismatches(3) CCAGTCTGGGCACCGGAGCCTGTGACCGCTTCGTTAGTGGAGAGGTAGCTGGCAGTCCGCTTCGGCGGGCCTGTGCCCCGCGCCGTTCTCGGGGCCTCCCTGCTGAGCTCGCGGCTCACGCTGAGAGGGACACGCAGTGACGAGCGGCCGAAGCAGCTTTGCG|AACTAAGGCCACATTTCAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACTTGGATGTAGAAGATGACCATGAGGAACAGCCTTCAAATCAAACTGTCCGAAGACCTCAGGCTGTCATTGAAGATGCTGTGGCTACCTCAGGCGTGAGCACGCTCAGTTCTACTGTGTCTCATGATTCCCAGAGTGCTCACCGGTCACTGAATGTACAGCTTGGAAGGATGAAAATAGAAACCAATAG___ATTACTGGAAGAATTGGTTCGGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3715 SIN3A::MAP3K5 ENSG00000169375.17::ENSG00000197442.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 635 TRUE 226 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75436346:- chr15:75661720-75748183:- chr15:75728687:- MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136567874:- chr6:136878184-137114235:- chr6:136889012:- chr15:75432638,chr15:75432990,chr15:75432992 chr6:136568499,chr6:136568499,chr6:136568498 NA NA chr15:75724979,chr15:75725331,chr15:75725333 chr6:136889637,chr6:136889637,chr6:136889636 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 2 24 29 80 ENST00000565264.2 ENST00000698928.1 upstream downstream mismappers(1),mismatches(2) GTCTGGGCACCGGAGCCTGTGACCGCTTCGTTAGTGGAGAGGTAGCTGGCAGTCCGCTTCGGCGGGCCTGTGCCCCGCGCCGTTC...GCAGCTTTGCG___GCTCGAGTGCAGTAGCGAGATCTCAGCTCACCTCAGCCTCTGTCTCCTGGACTCACATGATCCTCCCACGTCAGCCTCCTAAATAGCTGGGATTACAG|AACTAAGGCCACATTTCAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACTTGGATGTAGAAGATGACCATGAGGAACAGCCTTCAAATCAAACTGTCCGAAGACCTCAGGCTGTCATTGAAGATGCTGTGGCTACCTCAGGCGTGAGCACGCTCAGTTCTACTGTGTCTCATGATTCCCAGAGTGCTCACCGGTCACTGAATGTACAGCTTGGAAGGATGAAAATAGAAACCAATAG___ATTACTGGAAGAATTGGTTCGGAAAGAGAAAGAATTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3716 SIN3A::MAP3K5 ENSG00000169375.17::ENSG00000197442.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 635 TRUE 226 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75437530:- chr15:75661720-75748183:- chr15:75729871:- MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136567874:- chr6:136878184-137114235:- chr6:136889012:- chr15:75432638,chr15:75432990,chr15:75432992 chr6:136568499,chr6:136568499,chr6:136568498 NA NA chr15:75724979,chr15:75725331,chr15:75725333 chr6:136889637,chr6:136889637,chr6:136889636 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none none none 1 0 22 1 80 ENST00000360439.8 ENST00000698928.1 upstream downstream mismatches(2) GTCCGCCGGCCGCTCGGTCTGGCCGGCCCGACGTGGTGTGGGCCCTGCGGGCCCTGGGACCGAGCTGAGGGGAGGCTCGGAGTTCCGCGGCCG...AGATTGTTCATATTCCAAGGAGGAAGAATTTAACCTCTTGCTCTTTTAGTCAG|AACTAAGGCCACATTTCAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACTTGGATGTAGAAGATGACCATGAGGAACAGCCTTCAAATCAAACTGTCCGAAGACCTCAGGCTGTCATTGAAGATGCTGTGGCTACCTCAGGCGTGAGCACGCTCAGTTCTACTGTGTCTCATGATTCCCAGAGTGCTCACCGGTCACTGAATGTACAGCTTGGAAGGATGAAAATAGAAACCAATAG___ATTACTGGAAGAATTGGTTCGGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3717 SIN3A::MAP3K5 ENSG00000169375.17::ENSG00000197442.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 635 TRUE 226 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75455788:- chr15:75661720-75748183:- chr15:75748129:- MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136567874:- chr6:136878184-137114235:- chr6:136889012:- chr15:75432638,chr15:75432990,chr15:75432992 chr6:136568499,chr6:136568499,chr6:136568498 NA NA chr15:75724979,chr15:75725331,chr15:75725333 chr6:136889637,chr6:136889637,chr6:136889636 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none none none 0 1 0 0 80 ENST00000564778.6 ENST00000698928.1 upstream downstream none GGCGTTCCCCCCCATTCAGGACTCCTCGCCTGGCTCGGAAG|AACTAAGGCCACATTTCAGCCTTGCATCTGAGAGTGATACTGCTGATCAAGAAGACTTGG...ACCAAGAAATTAAACACCTGAAGCTTAAGTCCCAACCCATAG___AAATTCCTGAATTGCCTGTATTTCATCTAAATTCTTCTGGCACAAATACTGAAGATTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3718 PYGO1::ENSG00000259309 ENSG00000171016.13::ENSG00000259309.2 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 636 TRUE 227 PYGO1 ENSG00000171016.13 protein_coding - - chr15:55538884-55588947:- chr15:55587835:- chr15:55831082-55881145:- chr15:55880033:- ENSG00000259309 ENSG00000259309.2 lncRNA - - chr15:69820756-69835111:- chr15:69831642:- chr15:70113095-70127450:- chr15:70123981:- chr15:55549908 chr15:69832936 NA NA chr15:55842106 chr15:70125275 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 16 25 11 99 67 ENST00000563719.4 ENST00000650343.1 upstream downstream duplicates(1),mismatches(2) CTCGGCCGTGCCTCGGCTCCGAGGCTTGCCTCGCAGCCGCAGCGGCCCCGCGAGGAGGAGGAGCCGCCGCCGCAGCATCAAAGAGACCGAATTCCCGCGGCCTGGGGGGGAGTCATGCTTTGCGGTCTGTAATGTCAGCAGAACAGGAGAAGGATCCCATTTCGCTGAAGAGAGTTCGAG|CAGCCCAGATGGACTAAGATATCAGAGAAAGGGACTCGCAGAGACGGAGCATCTACCGGAGAAG___GTGGCCCATGTCTAGGGCTGAGACTGGATTGTTGGTCCACGTCAGGCGTCAGGAAAGCTGACGAGCACATTCCTGAACCACTACAGCCTCAGGTTCATGCAAACAGAGCTAACAGTGGCTTGGCCTCCCTGCCTGACCCTCTACCTCCGCTCTTGGATGAAGGCATGTGTGTTTGTATTTCCCA MSAEQEKDPISLKRVR|aaqmd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3719 PYGO1::ENSG00000259309 ENSG00000171016.13::ENSG00000259309.2 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 636 TRUE 227 PYGO1 ENSG00000171016.13 protein_coding - - chr15:55538884-55588947:- chr15:55587835:- chr15:55831082-55881145:- chr15:55880033:- ENSG00000259309 ENSG00000259309.2 lncRNA - - chr15:69820756-69835111:- chr15:69821121:- chr15:70113095-70127450:- chr15:70113460:- chr15:55549908 chr15:69832936 NA NA chr15:55842106 chr15:70125275 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 3 6 99 160 ENST00000563719.4 ENST00000650343.1 upstream downstream none GTCCTCCTCCCAAACTTTGCAAAGTCGGCCCGCGTCCCCACCGCCCTCGGCCGTGCCTCGGCTCCGAGGCTTGCCTCGCAGCCGCAGCGGCCCCGCGAGGAGGAGGAGCCGCCGCCGCAGCATCAAAGAGACCGAATTCCCGCGGCCTGGGGGGGAGTCATGCTTTGCGGTCTGTAATGTCAGCAGAACAGGAGAAGGATCCCATTTCGCTGAAGAGAGTTCGAG|GTGGCCCATGTCTAGGGCTGAGACTGGATTGTTGGTCCACGTCAGGCGTCAGGAAAGCTGACGAGCACATTCCTGAACCACTACAGCCTCAGGTTCATGCAAACAGAGCTAACAGTGGCTTGGCCTCCCTGCCTGACCCTCTACCTCCGCTCTTGGATGAAGGCATGTGTGTTTGTATTTCCCAAGGCTCAGCCCTGCACAGTGGGGAGCCCAGCTGGATCCTTG MSAEQEKDPISLKRVR|ggpclglrldcwstsgvrkadehipeplqpqvhanransglaslpdplpplldegmcvcisqgsalhsgepswil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3723 AIDA::FGGY ENSG00000186063.13::ENSG00000172456.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 321 TRUE 638 TRUE 228 AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222693789:- chr1:222841355-222886552:- chr1:222867131:- FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59456961:+ chr1:59762310-60276319:+ chr1:59922633:+ chr1:222688393,chr1:222688407 chr1:59446660,chr1:59446646 NA NA chr1:222861735,chr1:222861749 chr1:59912332,chr1:59912318 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Aida_N-terminus(84%)|FGGY_family_of_carbohydrate_kinases__C-terminal_domain(100%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(32%) Aida_N(74%)|FGGY_C(100%),FGGY_N(41%) 16 4 21 428 370 ENST00000340020.11 ENST00000424725.2 upstream upstream duplicates(1),low_entropy(1),mismatches(4) GCCAGTTTTAGGAGAGGCGCCGACTTCGACTCTTGGGGCCAGCTGGTGGAGGCGATAGACGAGTATCAGAT___ATTAGCAAGACATCTACAAAAGGAGGCCCAAGCTCAACACAATAATTCTGAATTCACAGAAGAACAAAAG___AAAACCATAGGCAAAATTGCAACATGCTTGGAATTGCGAAGTGCAGCTTTACAG___TCCACACAGTCTCAAGAAGAATTTAAACTGGAGGACCTGAAGAAGCTAGAACCAA|GTCTCTCTGCTCCCTGGTGTGTAAGTGGACATATTCAGCAGAGAAAGGCTGGGACGACAGTTTCTGGAAAATGATTGGTTTGGAAGACTTTGTTGCAGATAATTACAGCAAAATAG___GAAACCAAGTGCTACCTCCTGGAGCTTCTCTTGGAAATGGGCTCACACCAGAG ASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEP|sLSAPWCVSGHIQQRKAGTTVSGK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3724 AIDA::FGGY ENSG00000186063.13::ENSG00000172456.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 638 TRUE 228 AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222693789:- chr1:222841355-222886552:- chr1:222867131:- FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59512311:+ chr1:59762310-60276319:+ chr1:59977983:+ chr1:222688393,chr1:222688407 chr1:59446660,chr1:59446646 NA NA chr1:222861735,chr1:222861749 chr1:59912332,chr1:59912318 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Aida_N-terminus(84%)|FGGY_family_of_carbohydrate_kinases__C-terminal_domain(100%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(16%) Aida_N(74%)|FGGY_C(100%),FGGY_N(17%) 4 2 11 428 252 ENST00000340020.11 ENST00000634606.1 upstream upstream duplicates(1),mismatches(3) TTCGACTCTTGGGGCCAGCTGGTGGAGGCGATAGACGAGTATCAGAT___ATTAGCAAGACATCTACAAAAGGAGGCCCAAGCTCAACACAATAATTCTGAATT...GAAAACCATAGGCAAAATTGCAACATGCTTGGAATTGCGAAGTGCAGCTTTACAG___TCCACACAGTCTCAAGAAGAATTTAAACTGGAGGACCTGAAGAAGCTAGAACCAA|GAAACCAAGTGCTACCTCCTGGAGCTTCTCTTGGAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTTCTCCCTGGGATTGCGGTCGCAGCTTCACTCATTGATGCCCATGCAGGAGGACTAG___GAGTGATTGGGGCAGATGTGAGAGGGCACGGCCTCATCTGTGAG KTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEP|rNQVLPPGASLGNGLTPEAARDLGLLPGIAVAASLIDAHAGGLGVIGADVRGHGLIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3725 AIDA::FGGY ENSG00000186063.13::ENSG00000172456.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 638 TRUE 228 AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222694210:- chr1:222841355-222886552:- chr1:222867552:- FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59456961:+ chr1:59762310-60276319:+ chr1:59922633:+ chr1:222688393,chr1:222688407 chr1:59446660,chr1:59446646 NA NA chr1:222861735,chr1:222861749 chr1:59912332,chr1:59912318 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Aida_N-terminus(66%)|FGGY_family_of_carbohydrate_kinases__C-terminal_domain(100%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(32%) Aida_N(73%)|FGGY_C(100%),FGGY_N(41%) 0 2 13 593 370 ENST00000340020.11 ENST00000634606.1 upstream upstream mismatches(3),multimappers(1) TAGACGAGTATCAGAT___ATTAGCAAGACATCTACAAAAGGAGGCCCAAGCTCAACACAATAATTCTGAATTCACAGAAGAACAAAAG___AAAACCATAGGCAAAATTGCAACATGCTTGGAATTGCGAAGTGCAGCTTTACAG|GTCTCTCTGCTCCCTGGTGTGTAAGTGGACATATTCAGCAGAGAAAGGCTGGGACGACAGTTTCTGGAAAATGATTGGTTTGGAAGACTTTGTTGCAGATAATTACAGCAAAATAG___GAAACCAAGTGCTACCTCCTGGAGCTTCTCTTGGAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTTCTCCCTGGGATTGCGGTCGCAGCTTCACTCATTGATGCCCATGCAGGAGGACTAG___GAGTGATTGGGGCAGATGTGAGAGGGCACGGC DEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQ|vsllpgv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3726 AIDA::FGGY ENSG00000186063.13::ENSG00000172456.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 638 TRUE 228 AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222694210:- chr1:222841355-222886552:- chr1:222867552:- FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59512311:+ chr1:59762310-60276319:+ chr1:59977983:+ chr1:222688393,chr1:222688407 chr1:59446660,chr1:59446646 NA NA chr1:222861735,chr1:222861749 chr1:59912332,chr1:59912318 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Aida_N-terminus(66%)|FGGY_family_of_carbohydrate_kinases__C-terminal_domain(100%),FGGY_family_of_carbohydrate_kinases__N-terminal_domain(16%) Aida_N(73%)|FGGY_C(100%),FGGY_N(17%) 1 0 6 593 252 ENST00000340020.11 ENST00000634606.1 upstream upstream mismatches(2) CGATAGACGAGTATCAGAT___ATTAGCAAGACATCTACAAAAGGAGGCCCAAGCTCAACACAATAATTCTGAATTCACAGAAGAACAAAAG___AAAACCATAGGCAAAATTGCAACATGCTTGGAATTGCGAAGTGCAGCTTTACAG|GAAACCAAGTGCTACCTCCTGGAGCTTCTCTTGGAAATGGGCTCACACCAGAGGCAGCAAGAGACCTTGGCCTTCTCCCTGGGATTGCGGTCGCAGCTTCACTCATTGATGCCCATGCAGGAGGACTAG___GAGTGATTGGGGCAGATGTGAGAGGGCACGGCCTCATCTGTGAG IDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQ|etkcyllelllemgshqrqqetlafslglrsqlhslmpmqed* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3727 FGGY::AIDA ENSG00000172456.18::ENSG00000186063.13 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59378837:+ chr1:59762310-60276319:+ chr1:59844509:+ AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222687658:- chr1:222841355-222886552:- chr1:222861000:- chr1:59446648,chr1:59446649 chr1:222688388,chr1:222688387 NA NA chr1:59912320,chr1:59912321 chr1:222861730,chr1:222861729 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site inversion high none FGGY_family_of_carbohydrate_kinases__N-terminal_domain(67%)|Aida_N-terminus(15%),Axin_interactor_dorsalisation-associated_protein__C-terminal(100%) FGGY_N(24%)|Aida_C2(100%),Aida_N(0%) 3 1 1 211 349 ENST00000634399.1 ENST00000340020.11 downstream downstream duplicates(1) GTTTGATGCCACGTGTTCTCTGGTTGTTTTGGATAAGCAGTTTCACCCATTACCAGTCAACCAGGAAG___GGGATTCCCATCGAAACGTCATCATGTGGCTGG...CTGAAAGAG___AACTTGAGAGAGATTTGCTGGGATAAGGCGGGACATTTCTTTGATCTCCCGGACTTCTTATCGTGGAAGGCAACAGGTGTCACAGCACG|TCCTAAAGAATATTCTTACATATAATAAAGAATTCCCATTTGATGTTCAGCCTGTCCCATTAAG___AAGAATTTTGGCACCTGGTGAAGAAGAGAATTTGGAATTTGAAGAAGATGAAGAAGAGGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3728 RPTOR::EYA2 ENSG00000141564.16::ENSG00000064655.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 322 FALSE NA FALSE NA RPTOR ENSG00000141564.16 protein_coding + + chr17:80544819-80966371:+ chr17:80893865:+ chr17:78518619-78940171:+ chr17:78867665:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47001428:+ chr20:45523263-45817492:+ chr20:45630067:+ chr17:80906926 chr20:46990483 NA NA chr17:78880726 chr20:45619122 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none HEAT_repeat(100%),Raptor_N-terminal_CASPase_like_domain(100%)|haloacid_dehalogenase-like_hydrolase(100%) HEAT(100%),Raptor_N(100%)|Hydrolase(100%) 15 18 7 259 49 ENST00000306801.8 ENST00000357410.7 downstream upstream low_entropy(8),mismatches(5) AGCACCAGCAGCAGCGCCAGCAGCACCCTGGGCAGCCCCGAGAATGAGGAGCATATCCTGTCCTTCGAGACCATCGACAAGATGCGCCGCGCCAGCTCCTACTCCTCCCTCAACTCCCTCATCG|GCATCACCAAATCGGCCCCCCTGAGAGTGTCCCAGCTCTTCTCCAG___ATCTTGCCCACGTGTCCTCCCCCGCCAGCCTTCCACAGCCATGGCAGCCTACGGCCAGACGCAGTACAGTGCGGGGATCCAGCAGGCTACCCCCTATACAGCTTACCCACCTCCAGCACAAGCCTATGGAATCCCTTCCTACA___GCATCAAGACAG STSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLNSLI|gITKSAPLRVSQLFSRSCPRVLPRQPSTAMAAYGQTQYSAGIQQATPYTAYPPPAQAYGIPSYSIKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3616 chr20:47166967-47167058:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3729 TXNRD1::CIT ENSG00000198431.18::ENSG00000122966.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 639 TRUE 229 TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104289040:+ chr12:104609557-104744085:+ chr12:104682818:+ CIT ENSG00000122966.18 protein_coding - - chr12:119685791-119877320:- chr12:119834228:- chr12:120123596-120315124:- chr12:120272032:- chr12:104310283 chr12:119846212 NA NA chr12:104704061 chr12:120284016 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Glutaredoxin(100%)|CNH_domain(100%),PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(71%) Glutaredoxin(100%)|CNH(100%),PH(100%),PK_Tyr_Ser-Thr(32%),Pkinase(82%),Pkinase_C(100%) 17 11 10 651 198 ENST00000503506.6 ENST00000392521.7 downstream downstream duplicates(1),mismappers(1),mismatches(4) AAAGGTGGTCGAGTCCTGAAGGAGGGCCTGATGTCTTCATCATTCTCAAATTCTT___AGGACGGTCGGGCCCTGGAAGGAACGCTCTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTGTGAAACAGAGAAAGATAGGCGGCCATGGTCCAACCTTGAAG|GTCATGGAATATCAGCCTGGAGGGGACTTGCTGTCACTTTTGAATAGATATGAGGACCAGTTAGATGAAAACCTGATACAGTTTTACCTAGCTGAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCG___AGACATCAAGCCTGAGAACATTCTCGTTGACCGCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1178 chr12:119713634-119713724:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Citron Rho-interacting kinase AGC DMPK O14578 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3730 TXNRD1::CIT ENSG00000198431.18::ENSG00000122966.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 639 TRUE 229 TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104287109:+ chr12:104609557-104744085:+ chr12:104680887:+ CIT ENSG00000122966.18 protein_coding - - chr12:119685791-119877320:- chr12:119834228:- chr12:120123596-120315124:- chr12:120272032:- chr12:104310283 chr12:119846212 NA NA chr12:104704061 chr12:120284016 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none Glutaredoxin(56%)|CNH_domain(100%),PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(71%) Glutaredoxin(94%)|CNH(100%),PH(100%),PK_Tyr_Ser-Thr(32%),Pkinase(82%),Pkinase_C(100%) 0 9 1 656 198 ENST00000503506.6 ENST00000392521.7 downstream downstream mismatches(2) GAGCGAAAGGTGGTCGAGTCCTGAAGGAGGGCCTGATGTCTTCATCATTCTCAAATTCTT|GTCATGGAATATCAGCCTGGAGGGGACTTGCTGTCACTTTTGAATAGATATGAGGACCAGTTAGATGAAAACCTGATACAGTTTTACCTAGCTGAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCG___AGACATCAAGCCTGAGAACATTCTCGTTGACCGCACAGGACACATCAAGCTGGTGGATTTTGGATCTGCCGCGAAAATGAATTCAAACAAGATG___GTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1178 chr12:119713634-119713724:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Citron Rho-interacting kinase AGC DMPK O14578 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3731 TXNRD1::CIT ENSG00000198431.18::ENSG00000122966.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 639 TRUE 229 TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104287346:+ chr12:104609557-104744085:+ chr12:104681124:+ CIT ENSG00000122966.18 protein_coding - - chr12:119685791-119877320:- chr12:119834228:- chr12:120123596-120315124:- chr12:120272032:- chr12:104310283 chr12:119846212 NA NA chr12:104704061 chr12:120284016 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Glutaredoxin(56%)|CNH_domain(100%),PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(71%) Glutaredoxin(95%)|CNH(100%),PH(100%),PK_Tyr_Ser-Thr(32%),Pkinase(82%),Pkinase_C(100%) 0 2 1 164 198 ENST00000526691.5 ENST00000392521.7 downstream downstream duplicates(1) GGAGGCTTTTCCAAACCCAGGCAGCTTCGTGGCGTGTGCGGTTTCGACCCGGTCACACAAAGCTTCAGCATGTCATGTG|GTCATGGAATATCAGCCTGGAGGGGACTTGCTGTCACTTTTGAATAGATATGAGGACCAGTTAGATGAAAACCTGATACAGTTTTACCTAGCTGAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCG___AGACATCAAGCCTGAGAACATTCTCGTTGACCGCACAGGAC MSC|ghgisawrglavtfe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1178 chr12:119713634-119713724:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Citron Rho-interacting kinase AGC DMPK O14578 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3732 GOLM2::LINGO1 ENSG00000166734.20::ENSG00000169783.13 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44380976:+ chr15:44580917-44707956:+ chr15:44673174:+ LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77735053:- chr15:77905369-78113242:- chr15:78027395:- chr15:44389901,chr15:44389902 chr15:77760531,chr15:77760530 NA NA chr15:44682099,chr15:44682100 chr15:78052873,chr15:78052872 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |BspA_type_Leucine_rich_repeat_region_(6_copies)(100%),Immunoglobulin_I-set_domain(100%),Leucine_rich_repeat(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),LRR_5(100%),LRR_8(100%),ig(100%) 12 5 11 418 19 ENST00000299957.11 ENST00000570216.5 downstream downstream duplicates(2),mismatches(3) AGCCTCCTATTTCAGTTTCTCAACATGAAAGTCATCAAGCAATCTCCCATCTTCCAACTGGACAACCTCTCTCCCCAAATATGCCTCCAG___ATTCACACATAAACCACAATGGAAACCCCGGTACTTCAAAACAGAATCCTTCCAGTCCTCTTCAGCGTTTAATTCCAGGCTCAAACTTGGACAGTGAACCCAGAATTCAAACAGATATACTAAAGCAGGCTACCAAGGACAGAGTCAGTGATTTCCATAAATTGAAGCAAA|GTGTCCCACCGAGGAGGCCCTGATCTTGAGCCCGGAGCCCTGAGCCCTGAGACGATGCTTGA___CTGACCGTGAGACACCAGAGCCGTACCAGCCTCAAACACCTGATGTGCACAGCGTGCCAG...AAGGATATTTGGAGAATACTAAGGCCAAGGTGGA...___GGATCTTATGACCATGACCTGGCTACCTTGAGTCTGTGGGGCTACACAGCCTTCAGCCTGCATCTCCAGGGCTCTGACTCTATCCAGCTCC PPISVSQHESHQAISHLPTGQPLSPNMPPDSHINHNGNPGTSKQNPSSPLQRLIPGSNLDSEPRIQTDILKQATKDRVSDFHKLKQ|svpprrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3733 OMA1::ST6GALNAC5 ENSG00000162600.12::ENSG00000117069.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 640 TRUE 230 OMA1 ENSG00000162600.12 protein_coding - - chr1:58415384-58546802:- chr1:58506060:- chr1:58881056-59012474:- chr1:58971732:- ST6GALNAC5 ENSG00000117069.15 protein_coding + + chr1:76867480-77067546:+ chr1:77044204:+ chr1:77333165-77533231:+ chr1:77509889:+ chr1:58451049,chr1:58451051 chr1:77032976,chr1:77032974 NA NA chr1:58916721,chr1:58916723 chr1:77498661,chr1:77498659 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Peptidase_family_M48(100%)|Glycosyltransferase_family_29_(sialyltransferase)(100%) Peptidase_M48(100%)|Glyco_transf_29(9%) 10 4 10 385 20 ENST00000371226.8 ENST00000477717.6 upstream upstream none GTTTAATAGACCATACAGCAGAAAATTGGAGGCCGAAGCTGACAAAATTGGACTACTGCTTGCTGCAAAG___GCTTGTGCAGACATAAGAGCCAGTTCAGTGTTTTGGCAGCAAATGGAGTTCGTTGATAGCCTGCATGGCCAACCCAAGATGCCAGAATGGTTATCTACACACCCTTCTCATGGCAATCGAGTTGAGTACTTGGATAGACTTATACCTCAG|CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGG FNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQMEFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQ|PLKMHCRDCALVTSSGHLLHSRQGSQIDQTECVIRMNDAPTRGYGRDVGNRTSLRVIAHSSIQRILRNRHDLLNVSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7156 chr1:77060143-77060202:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3734 OMA1::ST6GALNAC5 ENSG00000162600.12::ENSG00000117069.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 640 TRUE 230 OMA1 ENSG00000162600.12 protein_coding - - chr1:58415384-58546802:- chr1:58527261:- chr1:58881056-59012474:- chr1:58992933:- ST6GALNAC5 ENSG00000117069.15 protein_coding + + chr1:76867480-77067546:+ chr1:77044204:+ chr1:77333165-77533231:+ chr1:77509889:+ chr1:58451049,chr1:58451051 chr1:77032976,chr1:77032974 NA NA chr1:58916721,chr1:58916723 chr1:77498661,chr1:77498659 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Peptidase_family_M48(75%)|Glycosyltransferase_family_29_(sialyltransferase)(100%) Peptidase_M48(24%)|Glyco_transf_29(9%) 0 1 0 376 20 ENST00000371226.8 ENST00000477717.6 upstream upstream none TATGTTTAATAGACCATACAGCAGAAAATTGGAGGCCGAAGCTGACAAgATTGGACTACTGCTTGCTGCAAAG|CCCCTGAAAATGCACTGCAGGGACTGTG...CATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCC MFNRPYSRKLEAEADKIGLLLAAK|PLKMHCRDC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7156 chr1:77060143-77060202:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3735 HBS1L::LMLN ENSG00000112339.15::ENSG00000185621.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HBS1L ENSG00000112339.15 protein_coding - - chr6:134960378-135103056:- chr6:134979178:- chr6:135281516-135424194:- chr6:135300316:- LMLN ENSG00000185621.11 protein_coding + - chr3:197960200-198043720:+ chr3:197985323:- chr3:197687071-197770591:+ chr3:197712194:- chr6:134978748,chr6:134978750 chr3:197991080,chr3:197991079 NA NA chr6:135299886,chr6:135299888 chr3:197717951,chr3:197717950 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Elongation_factor_Tu_GTP_binding_domain(100%),Elongation_factor_Tu_domain_2(90%),HBS1_N-terminus(100%)| GTP_EFTU(100%),GTP_EFTU_D2(89%),HBS1_N(100%),MMR_HSR1(100%)| 5 7 11 671 52 ENST00000367837.10 unknown upstream downstream mismappers(5),mismatches(7) CCGATGTTTTCAAAG___ATCAAGGATCTGGATTTTGCATAACTGGTAAAATAGAAGCTGGTTATATCCAAACTGGTGACCGACTACTGGCAATGCCTCCTAATGAAACTTGTACCGTGAAAG___GAATCACTCTGCATGATGAACCTGTCGACTGGGCGGCAGCAGGCGATCATGTTAGTCTTACTTTGGTTGGGATGGATATCATCAAAATCAA|AAGAATCCTCCCAAAGTTCTGGGATTACAGGCGAGAGCCACCGCGCCCGGCCCTTCTTCCTTTTTTGAGAAGCTATCAGCTATCAGGTATCACTTCTGAACAAGAGCTGGACCAGAGCTGAAAAGATGGAAGCTGGACACTGAGATACGTGGCCAAGACTGACACTTGCTTA DVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKIk|rilpkfwdyrrepprpallpflrsyqlsgitseqeldqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3662 chr6:134979338-134979432:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3736 LACTB::NEDD4 ENSG00000103642.12::ENSG00000069869.17 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 323 FALSE NA FALSE NA LACTB ENSG00000103642.12 protein_coding + + chr15:63121833-63142061:+ chr15:63129650:+ chr15:63414032-63434260:+ chr15:63421849:+ NEDD4 ENSG00000069869.17 protein_coding - - chr15:55826922-55993660:- chr15:55951589:- chr15:56119120-56285858:- chr15:56243787:- chr15:63132778,chr15:63132778 chr15:55956317,chr15:55956323 NA NA chr15:63424977,chr15:63424977 chr15:56248515,chr15:56248521 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Beta-lactamase(55%)|C2_domain(78%),HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) Beta-lactamase(37%)|C2(83%),HECT(100%),WW(100%) 9 9 5 108 215 ENST00000261893.9 ENST00000435532.8 downstream downstream mismatches(1) GCCGGAATTCAAAACCTGGCAAGAAAAAGAATGATTTTGAACAAGGCGAATTATATTTGAGAGAAAAGTTTGAAAATTCAATTGAATCCCTAAGATTATTTAAAAATGATCCTTTGTTCTTCAAACCTG___GTAGTCAGTTTTTGTATTCAACTTTTGGCTATACCCTACTGGCAGCCATAGTAGAGAGAGCTTCAGGATGTAAATATTTGGACTATATGCAGAAAATATTCCATGACTTGGATATGCTGACGACTGTGCAGGAAGAAAACGAGCCAGTGATTTACAATAGAGCAAG|TGATCCTTACGTGAGAGTGACGTTATATGACCCAATGAATGGAGTTCTTACAAGTGTGCAAACAAAAACCATTAAAAAG___AGTTTGAATCCAAAGTGGAATGAAGAAATATTATTCAGA___GTTCATCCTCAGCAGCACCGGCTTCTTTTTGAAGTGTTTGACGAAAACCGATTG___ACAAGAGATGATTTCCTAGGTCAAGTGGATGTTCCACTTTATCCATTACCG___ACAGAAAATCCAAGATTGGA RNSKPGKKKNDFEQGELYLREKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGCKYLDYMQKIFHDLDMLTTVQEENEPVIYNRAs|DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3737 ERC1::WNK1 ENSG00000082805.21::ENSG00000060237.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 324 FALSE NA FALSE NA ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1116033:+ chr12:1099675-1605099:+ chr12:1225199:+ WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:813642:+ chr12:861745-1020618:+ chr12:922808:+ chr12:1137583,chr12:1137583 chr12:781481,chr12:781478 NA NA chr12:1246749,chr12:1246749 chr12:890647,chr12:890644 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RIM-binding_protein_of_the_cytomatrix_active_zone(44%)|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(88%) Cast(23%)|OSR1_C(100%),PK_Tyr_Ser-Thr(43%),Pkinase(43%) 3 8 12 82 413 ENST00000360905.9 ENST00000315939.11 downstream upstream duplicates(1),mismatches(5) AGAAAGCGGCTGGTCTTCAGGCTGAG___ATTGGCCAGGTGAAACAGGAGCTGTCCAGAAAGGACACAGAACTACTCGCCCTGCAGACAAAGCTAGAAACACTCACAAACCAGTTCTCAGATAGTAAACAGCACATTGAAGTGTTGAAGGAGTCCTTGACTGCTAAGGAGCAGAGGGCTGCCATCCTGCAGACTGAG|GATCGAAAATTAACAAAGTCTGAGAGGCAGAGATTTAAAGAAGAAGCTGAAATGTTAAAAGGTCTTCAGCATCCCAATATTGTTAGATTTTATGATTCCTGGGAATCCACAGTAAAAGGAAAGAAGTGCATTGTTTTGGTGACTGAACTTATGACGTCTGGAACACTTAAAAC___GTATCTGAAAAGGTTTAAAGTGATGAAGATCAAAGTTCTAAGAAGCTGGTGCCGTCAGATCCTTAAAGGTCTTCAGTTTCTTCATACTCGAACTCCACCTATCATTCACCGC KAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE|DRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 TRUE Lung no_match TRUE Lung adenocarcinoma,Esophageal carcinoma LUNG,OESOPHAGUS no_match 1137738|1137738,1213990|1213990|1213990|1213990|1213990 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE 987378|977032,977032|987378|987381|980431|992109 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3738 DAB1::ST6GALNAC5 ENSG00000173406.16::ENSG00000117069.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 325 TRUE 641 TRUE 231 DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:58506060:- chr1:57460451-59012406:- chr1:58971732:- ST6GALNAC5 ENSG00000117069.15 protein_coding + + chr1:76867480-77067546:+ chr1:77044204:+ chr1:77333165-77533231:+ chr1:77509889:+ chr1:58451049,chr1:58451051 chr1:77032976,chr1:77032974 NA NA chr1:58916721,chr1:58916723 chr1:77498661,chr1:77498659 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Glycosyltransferase_family_29_(sialyltransferase)(100%) Peptidase_M48(100%)|Glyco_transf_29(9%) 8 4 10 385 20 ENST00000485760.5 ENST00000477717.6 upstream upstream none GTTTAATAGACCATACAGCAGAAAATTGGAGGCCGAAGCTGACAAAATTGGACTACTGCTTGCTGCAAAG___GCTTGTGCAGACATAAGAGCCAGTTCAGTGTTTTGGCAGCAAATGGAGTTCGTTGATAGCCTGCATGGCCAACCCAAGATGCCAGAATGGTTATCTACACACCCTTCTCATGGCAATCGAGTTGAGTACTTGGATAGACTTATACCTCAG|CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-7156 chr1:77060143-77060202:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3739 DAB1::ST6GALNAC5 ENSG00000173406.16::ENSG00000117069.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 641 TRUE 231 DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:58527261:- chr1:57460451-59012406:- chr1:58992933:- ST6GALNAC5 ENSG00000117069.15 protein_coding + + chr1:76867480-77067546:+ chr1:77044204:+ chr1:77333165-77533231:+ chr1:77509889:+ chr1:58451049,chr1:58451051 chr1:77032976,chr1:77032974 NA NA chr1:58916721,chr1:58916723 chr1:77498661,chr1:77498659 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Glycosyltransferase_family_29_(sialyltransferase)(100%) Peptidase_M48(24%)|Glyco_transf_29(9%) 0 1 0 376 20 ENST00000485760.5 ENST00000477717.6 upstream upstream none TATGTTTAATAGACCATACAGCAGAAAATTGGAGGCCGAAGCTGACAAgATTGGACTACTGCTTGCTGCAAAG|CCCCTGAAAATGCACTGCAGGGACTGTG...CATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-7156 chr1:77060143-77060202:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3744 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 327 TRUE 642 TRUE 232 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36298000:+ chr18:33877676-34360183:+ chr18:33877963:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36248922:+ chr18:33767460-33852120:+ chr18:33828885:+ chr18:36345102,chr18:36345100 chr18:36228416,chr18:36228411 NA NA chr18:33925065,chr18:33925063 chr18:33808379,chr18:33808374 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Formin_N-terminal_GTPase-binding_domain(51%)|MOSC_N-terminal_beta_barrel_domain(40%),MOSC_domain(100%) Formin_GBD_N(0%)|MOSC(100%),MOSC_N(6%) 6 5 6 107 163 ENST00000590592.6 ENST00000261326.6 downstream upstream duplicates(1),inconsistently_clipped(1) GCGCGCAGCTACCCGGGCGTCCCGGCCCGCGGCCCCGCTAACCCCGGGGCCCGCGCCCCCGCGGCAGGGATGCATCATGGCCACGCTGGCTTGCCGGGTGCAGTTCTTGGACGACACGGACCCTTTCAACAGCACCAACTTCCCCGAGCCCAGCCGGCCGCCGCTGTTCACGTTCCGCGAGGACCTCGCGCTCGGCACCCAGCTGGCGGGGGTCCATAGGCTGCTGCAGGCGCCGCACAAG|GGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTGTGCTGACAG___AGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGTTGTCAAC MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHK|gwsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,TRUE,TRUE|TRUE 33836931,33828885,33836931|33846712 FALSE,TRUE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3745 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 642 TRUE 232 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36298000:+ chr18:33877676-34360183:+ chr18:33877963:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36251159:+ chr18:33767460-33852120:+ chr18:33831122:+ chr18:36345102,chr18:36345100 chr18:36228416,chr18:36228411 NA NA chr18:33925065,chr18:33925063 chr18:33808379,chr18:33808374 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Formin_N-terminal_GTPase-binding_domain(51%)|MOSC_N-terminal_beta_barrel_domain(18%),MOSC_domain(100%) Formin_GBD_N(0%)|MOSC(100%),MOSC_N(0%) 1 1 3 107 141 ENST00000590592.6 ENST00000261326.6 downstream upstream none ATCATGGCCACGCTGGCTTGCCGGGTGCAGTTCTTGGACGACACGGACCCTTTCAACAGCACCAACTTCCCCGAGCCCAGCCGGCCGCCGCTGTTCACGTTCCGCGAGGACCTCGCGCTCGGCACCCAGCTGGCGGGGGTCCATAGGCTGCTGCAGGCGCCGCACAAG|AGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGTTGTCAACATTTTTTGGCCGTCCTTGTaATTTGATCAAACAAAGTTCAAACTCTCAAAGGAATGCAAAGAAGAAACATGGAAAAG___ATCAACTTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTATTTT MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHK|skyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,TRUE,TRUE|TRUE 33836931,33828885,33836931|33846712 FALSE,FALSE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3746 IQCG::HBS1L ENSG00000114473.14::ENSG00000112339.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 328 FALSE NA FALSE NA IQCG ENSG00000114473.14 protein_coding - - chr3:197889077-197960142:- chr3:197959529:- chr3:197615948-197687013:- chr3:197686400:- HBS1L ENSG00000112339.15 protein_coding - - chr6:134960378-135103056:- chr6:135050647:- chr6:135281516-135424194:- chr6:135371785:- chr3:197956733,chr3:197956738 chr6:135057735,chr6:135057737 NA NA chr3:197683604,chr3:197683609 chr6:135378873,chr6:135378875 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Elongation_factor_Tu_C-terminal_domain(100%),Elongation_factor_Tu_GTP_binding_domain(100%),Elongation_factor_Tu_domain_2(100%),HBS1_N-terminus(96%) |GTP_EFTU(100%),GTP_EFTU_D2(100%),GTP_EFTU_D3(100%),HBS1_N(73%),MMR_HSR1(100%) 11 1 4 32 690 ENST00000265239.11 ENST00000529882.5 upstream downstream duplicates(1) TGAAAAG___TTTCCAGCCAAGAATTGCCACTGCACCTGAGATAAGGGGGATCCTGGCCATTAAGGAAACCTTGCCTTCGAAACTGAGCCGTGAGGAACTATACAAAATGGGAAATTGGGACAAATCCCAGTGGCTCATGACACTAAGAAGTAAAATTACGAACTCACTGAGCTGGAAGTCATTCAACGGGAATTGAATAG|ATTTTGAAGATGATGATCTCTACGGCCAGTCTGTAGAGGATGATTATTGTATTTCGCCGTCAACAG___CTGCTCAGTTTATTTATTCACGGCGTGACAAACCTTCCGTTGAGCCTGTGGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-3662 chr6:134979338-134979432:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3747 GALK2::DRAIC ENSG00000156958.15::ENSG00000245750.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 643 TRUE 233 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49283718:+ chr15:49447853-49660066:+ chr15:49575915:+ DRAIC ENSG00000245750.11 lncRNA + + chr15:69462921-69843120:+ chr15:69819895:+ chr15:69755260-70135459:+ chr15:70112234:+ chr15:49290100,chr15:49290097 chr15:69815889,chr15:69815883 NA NA chr15:49582297,chr15:49582294 chr15:70108228,chr15:70108222 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none GHMP_kinases_N_terminal_domain(100%),Galactokinase_galactose-binding_signature(100%)| GHMP_kinases_N(100%),GalKase_gal_bdg(100%)| 2 4 8 123 54 ENST00000327171.7 unknown downstream upstream duplicates(2),homopolymer(1) GCCAAGAGTGAGCGTTACATTGGCACTGAAGGAGGAGGCATGGACCAGTCTATATCATTTCTTGCAGAAGAAGGAACT___GCCAAGTTGATAGAATTTAGTCCTCTGAGGGCAACCGATGTAAAACTCCCAAGTGGAGCAGTGTTTGTGATTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCCCATTTCAATATCAGGGTGATGGAGTGTCGGCTGGCTGCGAAG|TTTTTCCAGGAGGATTTGCTTGTGCTTATCTGCATAGTGAGCCTCAAGATTCTATGGGAATGAACTTAAAAATCTTCTGGCAAGGCTGGGAGCCCCTGGAGAACCAGACCATGAAGAAGGAAGCCCCTCCATCTTCTAAAGAAGGTTGAGAGGTC AKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAK|ffqedllvlicivslkilwe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3748 GALK2::DRAIC ENSG00000156958.15::ENSG00000245750.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 643 TRUE 233 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49283718:+ chr15:49447853-49660066:+ chr15:49575915:+ DRAIC ENSG00000245750.11 lncRNA + + chr15:69462921-69843120:+ chr15:69840746:+ chr15:69755260-70135459:+ chr15:70133085:+ chr15:49290100,chr15:49290097 chr15:69815889,chr15:69815883 NA NA chr15:49582297,chr15:49582294 chr15:70108228,chr15:70108222 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none GHMP_kinases_N_terminal_domain(100%),Galactokinase_galactose-binding_signature(100%)| GHMP_kinases_N(100%),GalKase_gal_bdg(100%)| 0 2 1 123 10 ENST00000327171.7 ENST00000560853.6 downstream upstream mismappers(1) CTTGCAGAAGAAGGAACT___GCCAAGTTGATAGAATTTAGTCCTCTGAGGGCAACCGATGTAAAACTCCCAAGTGGAGCAGTGTTTGTGATTGCCAACAGTTGTGTGGAGATGAATAAGGCAGCAACTTCCCATTTCAATATCAGGGTGATGGAGTGTCGGCTGGCTGCGAAG|CGAAATGCAGAAATGATAATGCCTCACAAGCTGGTTGTACAGATTGAATAACAATGTGAACAGAGCACCGAGTATAATCCCTG___AAACAGCAAACCAGAGGTCCCG LAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAK|rnaemimphklvvqie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3749 GALK2::DRAIC ENSG00000156958.15::ENSG00000245750.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 643 TRUE 233 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49239367:+ chr15:49447853-49660066:+ chr15:49531564:+ DRAIC ENSG00000245750.11 lncRNA + + chr15:69462921-69843120:+ chr15:69840746:+ chr15:69755260-70135459:+ chr15:70133085:+ chr15:49290100,chr15:49290097 chr15:69815889,chr15:69815883 NA NA chr15:49582297,chr15:49582294 chr15:70108228,chr15:70108222 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none GHMP_kinases_N_terminal_domain(55%),Galactokinase_galactose-binding_signature(100%)| GHMP_kinases_N(0%),GalKase_gal_bdg(100%)| 0 1 0 127 10 ENST00000327171.7 ENST00000560853.6 downstream upstream none GTGACGCTCACAGTGCTGGGAAGGAATCTATCCAAG|CGAAATGCAGAAATGATAATGCCTCACAAGCTGGTTGTACAGATTGAATAACAATGTGAACAGAGCACCGAGTATAATCCCTG___AAACAGCAAACCAGAGGTCCCG VTLTVLGRNLSK|rnaemimphklvvqie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3751 TRIO::DLG2 ENSG00000038382.23::ENSG00000150672.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE TRUE 329 FALSE NA FALSE NA TRIO ENSG00000038382.23 protein_coding + + chr5:14143342-14532128:+ chr5:14316743:+ chr5:14143451-14532237:+ chr5:14316852:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83833770:- chr11:83166055-85339379:- chr11:83544813:- chr5:14320062,chr5:14320061 chr11:83853876,chr11:83853877 NA NA chr5:14320171,chr5:14320170 chr11:83564919,chr11:83564920 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none CRAL/TRIO_domain(100%),Spectrin_repeat(27%)|Guanylate_kinase(100%),PDZ_domain(30%),SH3_domain(100%) CRAL_TRIO(100%),CRAL_TRIO_2(100%),Spectrin(17%)|Guanylate_kin(100%),PDZ(18%),PDZ_6(29%),SH3_1(100%),SH3_2(100%) 7 1 3 356 6 ENST00000344204.9 ENST00000706233.1 downstream downstream duplicates(1) GGAATATATGAACATATCACTCTTGCTTATTCTGAG___GTCAGCCAAGATGGGAAGTCGCTCCTTGACAAGCTCCAGCGGCCCTTGACTCCCGGCAGCTCCGATTCCCTGACAGCCTCTGCCAACTACTCCAAGGCCGTGCACCATGTCCTGGATGTCATCCACGAGGTGCTGCACCACCAGCGGCAGCTGGAGAACATCTGGCAACACCGCAAGGTCCGGCTGCATCAGAGGCTGCAGCTGTGTGTTTTCCAGCAGGACGTTCAGCAG|AGAGCCTCGCAAGGTAGTCCTGCACAAAGGCTCCACTGGCCTGGGCTTCAACATTGTCGGTGGGGAAGATGGAGAAGGTATTTTTGTGTCCTTCATTCTGGCTGGTGGACCAGCAGACCTAAGTGGGGAGCTCCAGAGAGGAGACCAGATCCTATCG___GTGAATGGCATTGACCTCCGTGGTGCATCCCACGAGCAGGCAGCTGCTGCACTAAAGGGGGCTGGACAGACAGTGACGATTATAGCACAATATCAA GIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQ|rasqgspaqrlhwpglqhcrwgrwrryfcvlhsgwwtsrpkwgaperrpdpigewh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Triple functional domain protein CAMK Trio O75962 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3752 ENSG00000273388::GAS7 ENSG00000273388.1::ENSG00000007237.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000273388 ENSG00000273388.1 lncRNA + + chr17:10291820-10317926:+ chr17:10291913:+ chr17:10195137-10221243:+ chr17:10195230:+ GAS7 ENSG00000007237.19 protein_coding - + chr17:9910606-10198606:- chr17:10140179:+ chr17:9813923-10101923:- chr17:10043496:+ chr17:10301275,chr17:10301274 chr17:10136904,chr17:10136900 NA NA chr17:10204592,chr17:10204591 chr17:10040221,chr17:10040217 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 6 1 3 9 ENST00000609088.1 unknown downstream upstream none CTGCTGCCGTCCATGTAAGATGGGACTTGCTCCTCCTTGCCTTCCACCATGATTGTGAGGCTTCCTCAGCCACGTGGAACT|GGGCTGGACATGGTGGCTCACATCTGCAATCCCAGCACTTTAGGAGGTCAAGGCGGGAGGACTGCGTGTGCCTAGGAGATCAAGAGCAGCTTGTGCAACATATGGAAACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3753 MIR99AHG::ENSG00000229425 ENSG00000215386.15::ENSG00000229425.5 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MIR99AHG ENSG00000215386.15 lncRNA + + chr21:15928296-16646364:+ chr21:16487538:+ chr21:17300616-18018683:+ chr21:17859858:+ ENSG00000229425 ENSG00000229425.5 lncRNA - + chr21:15368966-15627342:- chr21:15421490:+ chr21:16741285-16999661:- chr21:16793809:+ NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 4 3 0 97 6 ENST00000663412.1 unknown downstream upstream duplicates(1),mismappers(1) CAAGATTTGAACAAGAAGAGAATGGAATACACAATATG___...GGTGTGGAAGGTAGCCTGTTACAGTGCTGGATTCATAAAAGGGCCTTTATGGTTTGTGAAAGAATATCTGTGTGCTTAGGGAGGAAACTTTTTGATCTGCAGAAAAGCCAGAAGACATCTAG___GACATCCATAAAAATTCATCAGAGAGCATTTTACTACTGAGCTGCAAAG|ATGGGACCTTCACAATATATTCATTGTTCAGCTGGAAACCCTGGGAAGCAGTAATCTGAGCTCCTTGTCCTGAGGCCACTTGGTGGCCATCTCCATCCAATGTTGTCTGTGGACCCCAACAGAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3758 GLCE::LRRC49 ENSG00000138604.10::ENSG00000137821.12 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GLCE ENSG00000138604.10 protein_coding + + chr15:69160584-69272217:+ chr15:69210406:+ chr15:69452923-69564556:+ chr15:69502745:+ LRRC49 ENSG00000137821.12 protein_coding + - chr15:70853239-71053658:+ chr15:70993528:- chr15:71145578-71345997:+ chr15:71285867:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 2 0 1 76 0 ENST00000261858.7 unknown downstream downstream none GCGCTTCCTTGCCGAGAGGCTGGAGCTGCGGCACCGCAGGCCTGAGCCACCCCTTCTCTGCTGTCTCCTTCTCTTCCTCAGGGCTCCCGTGTCTGCTCGCCCTCCGACGCTGCTCAG___GAATTTGACAAGAAACTG...TATTTTGAATTGAAACCAGAGATGTTCTAGAGTTTAGATTCTTTCATTTGATTAAG|GCCAGGCAGTTCCAAGATGGTCGAATAGGAACAGCTCCAGTCTACAGCTCCCA...AGGCATCACCTCACCTGGGAAGGGCAAAGGGTCAGGGAATTCCCTTTCCTAGCCAAGGGAAGCTGTGACAGACGGCACCTGGAAAATCAGGTCACTCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3759 MED13L::TESC ENSG00000123066.9::ENSG00000088992.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MED13L ENSG00000123066.9 protein_coding - - chr12:115957905-116277693:- chr12:116007411:- chr12:116395710-116715498:- chr12:116445216:- TESC ENSG00000088992.18 protein_coding - + chr12:117038923-117099479:- chr12:117096315:+ chr12:117476728-117537284:- chr12:117534120:+ chr12:116006538,chr12:116006543 chr12:117095252,chr12:117095247 NA NA chr12:116444343,chr12:116444348 chr12:117533057,chr12:117533052 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Mediator_complex_subunit_13_N-terminal(100%)| Med13_N(100%)| 1 1 1 214 3 ENST00000281928.9 unknown upstream upstream none GCAAGACAAACAGCCCCAGTTGCAGCCACTCCACTTCCTTGACCCATTGCCTCTATCACAACAACCTGGAGACAGTTTGGGAGAAGTGAATGACCCATATACCTTTGAAGATGGTGACATAAAATACAT...AAAGATTCCCTGAAAAAGAATAAG|GGAAGATTCCCAAGGGAATGGCCTTGGAGGAAGGGCCCTGCCTGACCCACTGGGTCTCTGGGAGCTGACGTTCCCATGCCAAGCCG...CCTTCCCAACAACTTCAAGGGAGGTACTATGACTATGCCCATTTTATAGTAGATAAAACTGAGGCTCAGAGAGCATAAGTGACTTGCCCAAGGTACCTGGC KDSLKKNK|grfprewpwrkgpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-620 chr12:116148560-116148654:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3763 ENSG00000259363::CREB5 ENSG00000259363.6::ENSG00000146592.17 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000259363 ENSG00000259363.6 lncRNA + + chr15:99805793-99916818:+ chr15:99813086:+ chr15:100345998-100457023:+ chr15:100353291:+ CREB5 ENSG00000146592.17 protein_coding + - chr7:28299321-28825894:+ chr7:28575143:- chr7:28338940-28865511:+ chr7:28614761:- chr15:99814115,chr15:99814114,chr15:99814111 chr7:28586797,chr7:28586798,chr7:28586798 NA NA chr15:100354320,chr15:100354319,chr15:100354316 chr7:28626415,chr7:28626416,chr7:28626416 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 1 0 1 7 2 ENST00000670627.1 unknown downstream downstream none GCTCATTGTACAGTCAAGGCGGCAG___GGCCTTCTTCTGTCACCCATGCTGGAGTGCAGTAGCATGATCACAGCTCACGGTAGCCTCCACCTTCTGGGCTCAATCCTCCTACCTCAGCCTTCCAAGTAGCTGGGACTACAG|CCATGTCCATTGAACTACATCTAATATTCTGCATGACACATAGCATCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3764 PHF21B::ENSG00000287647 ENSG00000056487.16::ENSG00000287647.1 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PHF21B ENSG00000056487.16 protein_coding - - chr22:44881162-45010005:- chr22:44920398:- chr22:45277042-45405886:- chr22:45316278:- ENSG00000287647 ENSG00000287647.1 lncRNA - - chr1:77431314-77437604:- chr1:77433187:- chr1:77896999-77903289:- chr1:77898872:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 1 0 4 3 ENST00000313237.10 ENST00000666710.1 upstream downstream none GAACGGCGACCTCAAGAAGCAGCTCCACGAAAGGCAGCCGCGGATCGCCGCGCTCAGCGACAAACAA___GCTTTGGGAACGATCA...TCAGCTCCTTGCAGAGGTTGGCCGGGCAAGGAGCGGCAGTGCTACCTCAG|ATCTGATCAGAACCTGAATTCTCCTAATTTTCTTCAATATTTGGCTGCAACTCTCCAACTAAGAGCAAAAACTGCTCTGTGCTTGCCGCCTTAGAAGATGAAGCTAG SSLQRLAGQGAAVLPQ|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3802 ZZZ3::LINC01358 ENSG00000036549.13::ENSG00000237352.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 649 TRUE 234 ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77631835:- chr1:78028101-78149104:- chr1:78097520:- LINC01358 ENSG00000237352.6 lncRNA + - chr1:58933643-59240555:+ chr1:59012977:- chr1:59399315-59706227:+ chr1:59478649:- chr1:77616478 chr1:59028445 NA NA chr1:78082163 chr1:59494117 NA NA sense antisense stop-codon intron intron deletion/5'-5' medium none none none 0 1 3 760 9 ENST00000370801.8 unknown upstream downstream none GAAAAAGGGATATGTTGTGACTCTCAAAATAATGGAAGTGAAGGAGTAAGTAAACCACCCTCAGAGGCAAGACTCAATATTGGACATTTGCCATCTGCCAAAGAGAGTGCCAGTCAGCACATTACAGAAGAGGAAGATGATGATCCTGAT...CTGAAACACAACAAAGAGTcTGTGTAAATATG|ATGAGGATGAGGAAGCGGAGGATCAGAGCTTACGTGATTGGCTCAGTATCACACAGTACCACACAATAAACG___ATGAGGAGATTCTGGCTCACAGAGGTGAAGTGATCTGCTCAAGATGAAATAGCCAGCTGGTGAAATTACTGAGACAAGCACTCAG___GTTGTGAGGGAAGAAGTTGCCTCTTCcCATGGGTGCTTcCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3803 ZZZ3::LINC01358 ENSG00000036549.13::ENSG00000237352.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 649 TRUE 234 ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77631835:- chr1:78028101-78149104:- chr1:78097520:- LINC01358 ENSG00000237352.6 lncRNA + + chr1:58933643-59240555:+ chr1:59132347:+ chr1:59399315-59706227:+ chr1:59598019:+ chr1:77616478,chr1:77616478,chr1:77624533 chr1:59028415,chr1:59028416,chr1:59127551 NA NA chr1:78082163,chr1:78082163,chr1:78090218 chr1:59494087,chr1:59494088,chr1:59593223 NA NA sense sense stop-codon intron exon/splice-site inversion medium none none none 0 1 2 760 8 ENST00000370801.8 ENST00000634569.1 upstream upstream mismatches(2) AATATTGGACATTTGCCATCTGCCAAAGAGAGTGCCAGTCAGCACATTACAGAAGAGGAAGATGATGATCCTGATGTTTATTACTTTGAATCAGATCATGTGGCACTGAAACACAACAAAGAGTATGTGTAAATATG|ACTGCCCCTGTTTCAGCCTCCAGGAGAGTCTGTGACAAGGAGTGGGCTCCCTCTGCAAGGTGCTTGGATTCCTCTGAAGAAAGAAAGCAAGGAAACATGAAGTATGGTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3804 ZZZ3::LINC01358 ENSG00000036549.13::ENSG00000237352.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 649 TRUE 234 ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77631850:- chr1:78028101-78149104:- chr1:78097535:- LINC01358 ENSG00000237352.6 lncRNA + + chr1:58933643-59240555:+ chr1:59132347:+ chr1:59399315-59706227:+ chr1:59598019:+ chr1:77616478,chr1:77616478,chr1:77624533 chr1:59028415,chr1:59028416,chr1:59127551 NA NA chr1:78082163,chr1:78082163,chr1:78090218 chr1:59494087,chr1:59494088,chr1:59593223 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 2 1 706 8 ENST00000370801.8 ENST00000634569.1 upstream upstream duplicates(1),mismatches(1) GCACATTACAGAAGAGGAAGATGATGATCCTGATGTTTATTACTTTGAATCAGATCATGTGGCACTGAAACACAACAAAGA|ACTGCCCCTGTTTCAGCCTCCAGGAGAGTCTGTGACAAGGAGTGGGCTCCCTCTGCAAGGTGCTTGGATTCCTCTGAAGAAAGAAAGCAAGGAAACATGAAGTATGGTcATcGTGGCATTTTCAAGGGCGGGTGATGAAaGGAAACTTCCTGACATTTCAA HITEEEDDDPDVYYFESDHVALKHNKe|lplfqppgesvtrsglplqgawiplkkesket* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3805 ZZZ3::LINC01358 ENSG00000036549.13::ENSG00000237352.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 649 TRUE 234 ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77641384:- chr1:78028101-78149104:- chr1:78107069:- LINC01358 ENSG00000237352.6 lncRNA + + chr1:58933643-59240555:+ chr1:59132347:+ chr1:59399315-59706227:+ chr1:59598019:+ chr1:77616478,chr1:77616478,chr1:77624533 chr1:59028415,chr1:59028416,chr1:59127551 NA NA chr1:78082163,chr1:78082163,chr1:78090218 chr1:59494087,chr1:59494088,chr1:59593223 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 0 1 1 516 8 ENST00000370801.8 ENST00000634569.1 upstream upstream none AAATAATACCTGAAGTCTCAGTGTAACATGGACAATTAACAGTGATGACAGATAAATACAGACGCATGGGGATCAAATACTAGGCAAAACGCTTTTTAAAA...GCTTTTAAGAAACACTGCAGGATCCTGTCTATCTTAATGCTGATAGAGCTCAGCT|ACTGCCCCTGTTTCAGCCTCCAGGAGAGTCTGTGACAAGGAGTGGGCTCCCTCTGCAAGGTGCTTGGATTCCTCTGAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3806 ZZZ3::LINC01358 ENSG00000036549.13::ENSG00000237352.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA TRUE 649 TRUE 234 ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77683262:- chr1:78028101-78149104:- chr1:78148947:- LINC01358 ENSG00000237352.6 lncRNA + + chr1:58933643-59240555:+ chr1:59184431:+ chr1:59399315-59706227:+ chr1:59650103:+ chr1:77616478,chr1:77616478,chr1:77624533 chr1:59028415,chr1:59028416,chr1:59127551 NA NA chr1:78082163,chr1:78082163,chr1:78090218 chr1:59494087,chr1:59494088,chr1:59593223 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 2 0 624 6 ENST00000370798.5 ENST00000625548.1 upstream upstream mismatches(2) GCGGGAGGCGGGGACCCACCTGGAAGCGCCGCGGCGCCGCTATCGcGCTTCCTGCAGCGGgGGCCACCCGAGCAAGTGCCGTGGCGGGGGCGGAGAGCGGCCACGGCGGCGGCGCCTCCCCAAGTGGCCCGTTGCGTCCGACCCCGCGTGAAAG|GCTGGAAATGGAATAAGACAGTAACCCAGCCTCAACCAGAGATGAAGCCAACACTGTAGGAATGGTGCAAAAACAAGTTGGAAGTCACATGGGGTGCCCTGTGGAGCAGAGCCACCCCACTCACCTGACTACATTCCTCTGGACTATTAG___ATTCTCACCCAGCTTGTGCTCACATCCCCAGTGACAGAGACCTTACTACCTCATAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3816 FGGY::ENSG00000283445 ENSG00000172456.18::ENSG00000283445.1 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59457076:+ chr1:59762310-60276319:+ chr1:59922748:+ ENSG00000283445 ENSG00000283445.1 lncRNA + + chr1:58715609-58771295:+ chr1:58757643:+ chr1:59181281-59236967:+ chr1:59223315:+ chr1:59491012,chr1:59639607,chr1:59737328,chr1:59491013 chr1:58746388,chr1:58729097,chr1:58730875,chr1:58746386 NA NA chr1:59956684,chr1:60105279,chr1:60203000,chr1:59956685 chr1:59212060,chr1:59194769,chr1:59196547,chr1:59212058 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none FGGY_family_of_carbohydrate_kinases__N-terminal_domain(83%)| FGGY_N(58%)| 1 1 0 345 6 ENST00000634606.1 ENST00000637377.1 downstream upstream none CTGGaGTGTAAGTGGACATATTCAGCAGAGAAAGGCTGGGACGACAGTTTCTGGAAAATGATTGGTTTGGAAGACTTTGTTGCAGATAATTACAGCAAAATAG|AAAAACACCATAAATAGGATTTCTGATGTCCATTTTATAGATGAAGAAGGAAGGTTTAGCAAGGCCATTCAAGGATACACAGCTAGAGGACGAGATGGAATTGAAG LeCKWTYSAEKGWDDSFWKMIGLEDFVADNYSKI|ekhhk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3823 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 330 FALSE NA FALSE NA TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31783921:+ chr20:30327074-30389608:+ chr20:30371724:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31527484:+ chr20:30102231-30165726:+ chr20:30115287:+ chr20:31792618,chr20:31792617 chr20:31526684,chr20:31526680 NA NA chr20:30380421,chr20:30380420 chr20:30114487,chr20:30114483 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Aurora-A_binding_(100%),Cell_cycle_regulated_microtubule_associated_protein(85%)|Signal_peptide_peptidase(100%) Aurora-A_bind(100%),TPX2_importin(15%)|PUA(100%),Peptidase_A22B(100%),Pre-PUA(100%) 177 80 71 1277 1342 ENST00000340513.4 ENST00000340852.9 downstream upstream duplicates(30),inconsistently_clipped(1),low_entropy(1),mismappers(1),mismatches(33) GAGAAATTGCAACA___ATACAAATTCAAAGCACGTGAACTTGATCCCAGAATACTTGAAGGTGGGCCCATCTTGCCCAAGAAACCACCTGTGAAACCACCCACCGAGCCTATTGGCTTTGATTTGGAAATTGAGAAAAGAATCCAGGAGCGAGAATCAAAGAAGAAAACAGAGGATGAACACTTTGAATTTCATTCCAGACCTTGCCCTACTAAGATTTTGGAAGATGTTGTG|AATGCTTCAGACATGCCTGAAACAATCACCAGCCGGGATGCCGCCCGCTTCCCCATCATCGCCAGCTGCACACTCTTGGGGCTCTACCTCTTTTTCAAA___ATATTCTCCCAGGAGTACATCAACCTCCTGCTGTCCATGTATTTCTTCGTGCTGGGAATCCTGGCCCTGTCCCACACCATCA EKLQQYKFKARELDPRILEGGPILPKKPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVV|NASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary no_match TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 FALSE|FALSE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 TRUE|TRUE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3824 MARS1::TMEM120B ENSG00000166986.15::ENSG00000188735.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 331 TRUE 651 TRUE 235 MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57504299:+ chr12:57869228-57911352:+ chr12:57898082:+ TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121743629:+ chr12:122150658-122220907:+ chr12:122181535:+ chr12:57507950,chr12:57507944 chr12:121737060,chr12:121737051 NA NA chr12:57901733,chr12:57901727 chr12:122174966,chr12:122174957 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Glutathione_S-transferase__C-terminal_domain(100%),Glutathione_S-transferase__N-terminal_domain(100%),tRNA_synthetases_class_I_(M)(47%)|TMPIT-like_protein(95%) GST_C(100%),GST_N_5(100%),PH(100%),SH3_1(100%),WW(100%),tRNA-synt_1g(52%)|Arf(100%),Ras(100%),TMPIT(51%) 108 79 107 3283 358 ENST00000537638.6 ENST00000449592.7 downstream upstream duplicates(19),low_entropy(1),mismatches(22) TGTCCCTTCTGTGGCTATGAGGAGGCTCGGGGTGACCAGTGTGACAAGTGTGGCAAGCTCATCAATGCTGTCGAGCTTAAG___AAGCCTCAGTGTAAAGTCTGCCGATCATGCCCTGTGGTGCAGTCGAGCCAGCACCTGTTTCTGGACCTGCCTAAG|GAGACGCACAGGATCTACAAGCAGAAGCTGGAGGAGCTGGCTGCGCTGCAGACGCTGTGTAGCAGTTCCATCAGTAAGCAGAAGAAGCACCTCAAGGACTTGAAGCTTACACTCCAGAG___GTGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTCAGCAGATGGCAGCGAA CPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPK|ETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQRCKRHASREEAELVQQMAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3825 MARS1::TMEM120B ENSG00000166986.15::ENSG00000188735.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 651 TRUE 235 MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57504299:+ chr12:57869228-57911352:+ chr12:57898082:+ TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121748326:+ chr12:122150658-122220907:+ chr12:122186232:+ chr12:57507950,chr12:57507944 chr12:121737060,chr12:121737051 NA NA chr12:57901733,chr12:57901727 chr12:122174966,chr12:122174957 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Glutathione_S-transferase__C-terminal_domain(100%),Glutathione_S-transferase__N-terminal_domain(100%),tRNA_synthetases_class_I_(M)(47%)|TMPIT-like_protein(82%) GST_C(100%),GST_N_5(100%),PH(100%),SH3_1(100%),WW(100%),tRNA-synt_1g(52%)|Arf(100%),Ras(100%),TMPIT(43%) 1 0 29 3283 544 ENST00000537638.6 ENST00000449592.7 downstream upstream mismatches(4) CCTTCTGTGGCTATGAGGAGGCTCGGGGTGACCAGTGTGACAAGTGTGGCAAGCTCATCAATGCTGTCGAGCTTAAG___AAGCCTCAGTGTAAAGTCTGCCGATCATGCCCTGTGGTGCAGTCGAGCCAGCACCTGTTTCTGGACCTGCCTAAG|GTGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTCAGCAGATGGCAGCGAACATCAAGGAGCGGCAGGACGTCTTCTTCGACATGGAGGCCTACCTGCCCAAGAAGAACGG___GCTCTACTTGAACCTGGTCCTCGGCAATGTGAACGTGACCCTCCTCAGCAACCAGGCCAA___GTTCGCC FCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPK|vqtpcqsggggarsadgsehqgaagrllrhgglpaqeerallepgprqcerdppqqpgqvr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3827 PDE4A::QTRT1 ENSG00000065989.16::ENSG00000213339.9 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 652 TRUE 236 PDE4A ENSG00000065989.16 protein_coding + + chr19:10416773-10469630:+ chr19:10431086:+ chr19:10527449-10580306:+ chr19:10541762:+ QTRT1 ENSG00000213339.9 protein_coding + + chr19:10701430-10713437:+ chr19:10707302:+ chr19:10812106-10824113:+ chr19:10817978:+ chr19:10439433,chr19:10439434,chr19:10439433 chr19:10704782,chr19:10704496,chr19:10704779 NA NA chr19:10550109,chr19:10550110,chr19:10550109 chr19:10815458,chr19:10815172,chr19:10815455 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Queuine_tRNA-ribosyltransferase(64%) |TGT(50%) 1 1 7 84 475 ENST00000293683.9 ENST00000250237.10 downstream upstream duplicates(1),mismatches(3) GTGGCCTTCCCGGTGGCGGTGGCGGCTGAGGACGAGGCGTTCCTGCCCGAGCCCCTGGCCCCGCGCGCGCCCCGCCGCCCGCGTTCGCCGCCCTCCTCGCCCGTCTTCTTCGCCAGCCCGTCCCCAACTTTCCGCAGACGCCTTCGGCTTCTCCGCAGCTGCCAGGATTTGGGCCGCCAGGCTTGGGCTGGGGCTGG|GCTCGGACATCATCATGCAGCTGGACGACGTGGTTAGCAGTACTGTGACTGGGCCACGTGTGGAGGAGGCCATGTACAG___GTCAATCCGCTGGCTGGACCGGTGCATTGCAGCCCATCAGCGGCCGGACAAGCAGAACCTCTTCGCCATTATCCAGGGTGGGCTGGACGCAG VAFPVAVAAEDEAFLPEPLAPRAPRRPRSPPSSPVFFASPSPTFRRRLRLLRSCQDLGRQAWAGAg|lghhhaagrrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3828 PDE4A::QTRT1 ENSG00000065989.16::ENSG00000213339.9 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 652 TRUE 236 PDE4A ENSG00000065989.16 protein_coding + + chr19:10416773-10469630:+ chr19:10421084:+ chr19:10527449-10580306:+ chr19:10531760:+ QTRT1 ENSG00000213339.9 protein_coding + + chr19:10701430-10713437:+ chr19:10707302:+ chr19:10812106-10824113:+ chr19:10817978:+ chr19:10439433,chr19:10439434,chr19:10439433 chr19:10704782,chr19:10704496,chr19:10704779 NA NA chr19:10550109,chr19:10550110,chr19:10550109 chr19:10815458,chr19:10815172,chr19:10815455 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Queuine_tRNA-ribosyltransferase(64%) |TGT(50%) 2 0 3 33 475 ENST00000380702.7 ENST00000250237.10 downstream upstream none GCCAGGGCCCCCTGGGGCGCAAGTGGGGGCCGGCGCCATGGAACCCCCGACCGTCCCCTCGGAAAGGAGCCTGTCTCTGTCACTGCCCGGGCCCCGGGAGG...CCGTATCCAGCAGCGCGGCTACTCCGACAGCGCGGAGCGCGCCGAGCGGGAGCGGCAGCCGCACCGcCCCATAGAGCcCGCCGATGCCATGGACACCAGCGACCGGCCCGGCCTGCGCACGACCCGCATGTCCTGGCCCTCGTCCTTCCATGGCACTGGCACCGGCAGCGGCGGCGCGGGCGGAGGCAGCAGCAGGCG|GCTCGGACATCATCATGCAGCTGGACGACGTGGTTAGCAGTACTGTGACTGGGCCACGTGTGGAGGAGGCCATGTACAG___GTCAATCCGCTGGCTGGACCGGTGCATTGCAGCCCATCAGCGGCCGGACAAGCAGAACCTCTTCGCCATTATCCAGGGTGGGCTGGACGCAG RIQQRGYSDSAERAERERQPHRPIEpADAMDTSDRPGLRTTRMSWPSSFHGTGTGSGGAGGGSSRr|lghhhaagrrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3837 MTMR12::PDZD2 ENSG00000150712.11::ENSG00000133401.16 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTMR12 ENSG00000150712.11 protein_coding - - chr5:32226994-32312987:- chr5:32243521:- chr5:32227100-32313093:- chr5:32243627:- PDZD2 ENSG00000133401.16 protein_coding + - chr5:31639131-32110932:+ chr5:31780871:- chr5:31639238-32111038:+ chr5:31780978:- chr5:32242923,chr5:32242927 chr5:31787049,chr5:31787050 NA NA chr5:32243029,chr5:32243033 chr5:31787156,chr5:31787157 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Myotubularin-like_phosphatase_domain(27%)| Myotub-related(34%)| 10 6 12 76 38 ENST00000280285.9 unknown upstream downstream duplicates(1),mismappers(1),mismatches(1) CCTTTTGAAAATGTCAGCACTGCCCAAAGAACAGGATGACGGCATTTTACAAATCCAAAAGAGCTTCTTAGATGG___AATTTACAAGACCATCCACAGGCCACCCTATGAAATTGTTAAAACGGAAGACCTGTCAAGCAACTTCCTGTCCCTGCAGGAAATCCAGACTGCATACTCTAAATTTAAACAGCTATTTCTGATAG___ATAACAGTACTGAATTTTGGGACACAGATATAAAATGGTTTTCTCTGTTGGAAAGTAGCAGCTGGCTTGACATAATCAG|CTCTCAGTGACACGCCTGGAACTGCTGCTGCTACCCTGCTCCAGCCTAAATGAAGCTTAATCCTGGGGATCACAGAGTGAGAGGGAAAATGAGATTGGGACCCTGAGGACACCGCGGAACCACTGAATATCCTTCCTGCTGAAGCCGGTTTGGGGTGGGTTTTTGTAACCAGCCTCTTGAAAACATCCTGTTATATGTGTGCTTCTGTGCTTGGAGCTGTATATTAAAAGGAAATGTCTAAGACAGACATGCAAATTTAAACTTCTGA LLKMSALPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSSNFLSLQEIQTAYSKFKQLFLIDNSTEFWDTDIKWFSLLESSSWLDIIs|sq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3838 CCDC57::SLC38A10 ENSG00000176155.21::ENSG00000157637.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 335 FALSE NA FALSE NA CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82151560:- chr17:80059336-80170754:- chr17:80109436:- SLC38A10 ENSG00000157637.13 protein_coding - - chr17:81244811-81295547:- chr17:81253240:- chr17:79218611-79269347:- chr17:79227040:- chr17:82148957,chr17:82149207,chr17:82149209 chr17:81255393,chr17:81255393,chr17:81255392 NA NA chr17:80106833,chr17:80107083,chr17:80107085 chr17:79229193,chr17:79229193,chr17:79229192 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none none none 9 7 11 163 1385 ENST00000694881.1 ENST00000374759.8 upstream downstream mismatches(2) CCGAGGACCAGGGGGAGCTTTTCCTGCACCTCCGGTCAGTGGCACGTGCCCCCCAGACCTTATCTATGCACCGACTCCAGAGAAAGCTGAAGGAGGCAGCCAGAAAAATCATCAGCCTCCGCCTGGAGAAAGAGCAGCTCATCGAGATGGGGAACAGGCTCCGTGCAGAGCTGGGCCGACCCGAAA|CCCAGGATCCGGTTGTGGCCGTGGCTGAGGATGGCCGGGAGAAGCCGAAGCTGCCGAAGGAGAGAGAGGAGCTGGAGCAGGCCCAGATCAAGGGGCCCGTGGATGTGCCTGGACGGGAAGATGGCAAGGAGGCACCGGAGGAGGCACAGCTCGATCGCCCTGGGCAAG___GGATTGCTGTGCCTGTGGGCGAGGCCCACCGCCACGAGCCTCCTGTTCCTCACGACAAGGTGGTGGTAGATGAAGG EDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMGNRLRAELGRPE|tQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3839 ACOT7::HMCN1 ENSG00000097021.21::ENSG00000143341.12 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 336 TRUE 655 TRUE 237 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6358826:- chr1:6324329-6453827:- chr1:6418886:- HMCN1 ENSG00000143341.12 protein_coding + + chr1:185734391-186190949:+ chr1:185962518:+ chr1:185703523-186160081:+ chr1:185931650:+ chr1:6353087,chr1:6353090 chr1:185934201,chr1:185934198 NA NA chr1:6413147,chr1:6413150 chr1:185903333,chr1:185903330 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),G2F_domain(100%),Immunoglobulin_I-set_domain(96%),Immunoglobulin_domain(100%),Thrombospondin_type_1_domain(100%) |EGF(100%),EGF_3(100%),EGF_CA(100%),G2F(100%),I-set(99%),Ig_2(100%),Ig_3(99%),TSP_1(100%),cEGF(100%),hEGF(100%),ig(99%) 9 2 13 195 23 ENST00000377842.7 ENST00000271588.9 upstream upstream duplicates(2),mismatches(1) CCGGTGTGGCAGGGAGCTGGGACAGTCCTGGGTCAGGCAAGGACTCTGTGATGCTTCCCTGCTCCCTCGCCTTTCTCTGCATCTGATCCTGGGATGTCCTAGCCACCATGGCTTTCCAGCTGAGCAG|AACCACCCAAAGTCACTGTGATGCCCAAGAATCAGTCTTTCACAGGAGGGTCTGAGGTCTCCATCATGTGTTCTGCAACAGGTTATCCCAAACCAAAGATTGCCTGGACCGTTAACGATATGTTTATCGTGGGTTCACACAG___GTATAGGATGACCTCAGATGGTACCTTATTTATCAAAAATGCAGCTCCCAAAGATGCAGGGATCTATGGTTGCCTAGCAAGTAATTCAGCTGGAA MAFQLSr|ttqshcdaqesvfhrrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3840 ACOT7::HMCN1 ENSG00000097021.21::ENSG00000143341.12 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 337 TRUE 655 TRUE 237 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6393257:- chr1:6324329-6453827:- chr1:6453317:- HMCN1 ENSG00000143341.12 protein_coding + + chr1:185734391-186190949:+ chr1:185962518:+ chr1:185703523-186160081:+ chr1:185931650:+ chr1:6353087,chr1:6353090 chr1:185934201,chr1:185934198 NA NA chr1:6413147,chr1:6413150 chr1:185903333,chr1:185903330 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),G2F_domain(100%),Immunoglobulin_I-set_domain(96%),Immunoglobulin_domain(100%),Thrombospondin_type_1_domain(100%) |EGF(100%),EGF_3(100%),EGF_CA(100%),G2F(100%),I-set(99%),Ig_2(100%),Ig_3(99%),TSP_1(100%),cEGF(100%),hEGF(100%),ig(99%) 7 5 9 293 23 ENST00000361521.9 ENST00000271588.9 upstream upstream duplicates(1),mismatches(1) GCCGGGCCTGCCAGACACCTGCGCCCTTCTGCAGCCGCCCGCCGCATCCGCCGCCGCAGCCCCCAGCATGTCGGGCCCAGACGTCGAGACGCCGTCCGCCATCCAGATCTGCCG|AACCACCCAAAGTCACTGTGATGCCCAAGAATCAGTCTTTCACAGGAGGGTCTGAGGTCTCCATCATGTGTTCTGCAACAGGTTATCCCAAACCAAAGATTGCCTGGACCGTTAACGATATGTTTATCGTGGGTTCACACAG___GTATAGGATGACCTCAGATGGTACCTTATTTATCAAAAATGCAGCTCCCAAAGATGCAGGGATCTATGGTTGCCTAGCA PGLPDTCALLQPPAASAAAAPSMSGPDVETPSAIQICr|ttqshcdaqesvfhrrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3847 ZNF607::ZNF675 ENSG00000198182.13::ENSG00000197372.10 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF607 ENSG00000198182.13 protein_coding - - chr19:37696371-37719761:- chr19:37719269:- chr19:38187272-38210662:- chr19:38210170:- ZNF675 ENSG00000197372.10 protein_coding - + chr19:23525631-23687220:- chr19:23609825:+ chr19:23708433-23870022:- chr19:23792627:+ chr19:37716203,chr19:37716205 chr19:23588063,chr19:23588056 NA NA chr19:38207104,chr19:38207106 chr19:23770865,chr19:23770858 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 4 1 3 68 72 ENST00000355202.9 unknown upstream upstream mismatches(3) TGGACCCCTGGCTCCGGTTCCGGGACCTTTTGGTTCCACCTGAAGAAGGCGGCGCAGGTCACTGCGGGAGCCTCTGCAGCCCCAGCCCGCCGCCCGCGTGGTACCCTGCGTGGCGGTGAGAGTGGGGCTGCAGGAGGCGCTCAGAGCGCGGAGGCCCCCAGGCGGGCCGGGCGAGTCTCCCGCCTCCTCAGGCCCTAGGGTGCTGGAGCTGCGGAGGAGGGGCCCGTCTCTAGGAGACAGGCGGGGgGCGTGAGAGACCGCGCAGCGGCGACAGGACCGGCTTGCCTGTGTGACGTGGGTGCAGTTGCGGGACTGTGAGGG|GTCTGCTGCAGTTTGCTGGGGGTCAGTCCACTCCAGATGCTGTTCACCTGGGTATCACCAGTGAAGGCTGCGGAACAGCAAAGATTGCCACCTGCTCCTTCCTCTGGAAGCTTCTTCCCCTGGAAGCTTCTTCCCACAGGGACACTGACCTGATGCCAGCCTGAACTCTCCTGTATGAGGTGTCGGGAACCCCTGTTGGGAGGTCTCACCCAGTCAGGAGGCACAGATTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3848 HMCN1::CYP1B1-AS1 ENSG00000143341.12::ENSG00000232973.14 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HMCN1 ENSG00000143341.12 protein_coding + + chr1:185734391-186190949:+ chr1:185928667:+ chr1:185703523-186160081:+ chr1:185897799:+ CYP1B1-AS1 ENSG00000232973.14 lncRNA + + chr2:38073447-38231651:+ chr2:38231560:+ chr2:38300590-38458793:+ chr2:38458702:+ chr1:185932648,chr1:185932648 chr2:38229575,chr2:38229572 NA NA chr1:185901780,chr1:185901780 chr2:38456717,chr2:38456714 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 4 3 0 13 5 ENST00000271588.9 ENST00000629773.2 downstream upstream none GAGAAAACCCCAGGATACTATCTGCAGCCGGGCCAAATTCCCTGCTCTGTTGACAGTCTTTTGCCCTTTACCTTGAGCTTTGTCAGAAATGGAGTTACACTTGGAGTAGACCAGTATTTGAA___AGAATCTGCCAGTGTGAACTTAGATATTGCAAAGGTCACTTTGTCTGACGAAGGTTTCTATGAATGCATTGCTGTCAGCAGTGCAGGTACTGGACGGGCACAGACATTTTTTGACGTATCAG|CTGGAACCATGGAGGATGTAGAAGAGAAGAAGAAGAAGGTTCCTGTTATGCCAGAAACCCTTAAGAAAAAGGGAAGGAATTTCTCAGAGCTGAAGATCAAGTGCCTTTGAAAGAAGTTTGCCTAAAAGATGCTTTGAAAGGCAAGGAGGAAGCTTATCTATGAAGAAGCAAAGCACTATCAC EKTPGYYLQPGQIPCSVDSLLPFTLSFVRNGVTLGVDQYLKESASVNLDIAKVTLSDEGFYECIAVSSAGTGRAQTFFDVS|agtmedveekkkkvpvmpetlkkkgrnfselkikcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3849 ENSG00000243389::TTL ENSG00000243389.1::ENSG00000114999.8 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 657 TRUE 238 ENSG00000243389 ENSG00000243389.1 lncRNA + + chr2:112589040-112614431:+ chr2:112589245:+ chr2:113346617-113372008:+ chr2:113346822:+ TTL ENSG00000114999.8 protein_coding + + chr2:112482156-112541739:+ chr2:112520282:+ chr2:113239733-113299316:+ chr2:113277859:+ chr2:112591891 chr2:112515757 NA NA chr2:113349468 chr2:113273334 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Tubulin-tyrosine_ligase_family(26%) |TTL(24%) 2 1 4 10 213 ENST00000414784.1 ENST00000233336.7 downstream upstream mismatches(2) TAAAGACTCTGTATACTGGGCTTTGATTCCTGCCATCCGTACCTGAGAGGGTCCTAGGAGAGCTGGCTGGGCAGAGTCATCTGTTCCCCAGCTTCACCGGGTGTGCCAAGGAAGTGCCTGGGAAGAACAGGACTCTGCAGCTGTGCCCCAGGGTTGAGACTACCCTGCCTCCCTTGTGAACTCTGCCACACAGCCATTTCCTGACTTCTGCTGCATGTGCCTGGG|GAACTGCCTCCTGAGCGTGGAGCCTGCCATTAGCACCAAGCACCTCCCTTACCAGAGCTTCCAGCTCTTCGGCTTTGACTTCATGGTCGATGAGGAGCTGAAGGTGTGGCTCATTGAGGTCAACGGTGCCCCTGCATGTGCTCA___GAAGCTCTATGCAGAACTGTGCCAAGGCATCGTGGACATAGCCATTTCCAGTGTCTTCCCACCCCCAGATGaGG...ATGGTGAAATGACTGGATTGCTCTTTATCCAGCCCACAGCAGGGGAAAGAAAGGCAACTCGCAAAGATGAGATGGAAGAAGGCACGTGAGCAGAGGAGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3850 ENSG00000243389::TTL ENSG00000243389.1::ENSG00000114999.8 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 657 TRUE 238 ENSG00000243389 ENSG00000243389.1 lncRNA + + chr2:112589040-112614431:+ chr2:112589245:+ chr2:113346617-113372008:+ chr2:113346822:+ TTL ENSG00000114999.8 protein_coding + + chr2:112482156-112541739:+ chr2:112528681:+ chr2:113239733-113299316:+ chr2:113286258:+ chr2:112591891 chr2:112515757 NA NA chr2:113349468 chr2:113273334 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Tubulin-tyrosine_ligase_family(9%) |TTL(0%) 0 1 1 10 323 ENST00000414784.1 ENST00000233336.7 downstream upstream none GTGCCAAGGAAGTGCCTGGGAAGAACAGGACTCTGCAGCTGTGCCCCAGGGTTGAGACTACCCTGCCTCCCTTGTGAACTCTGCCACACAGCCATTTCCTGACTTCTGCTGCATGTGCCTGGG|GAAGCTCTATGCAGAACTGTGCCAAGGCATCGTGGACATAGCCATTTCCAGTGTCTTCCCACCCCCAGATGTGGAGCAACCTCAGACCCAGCCAGCTGCCTTCATCAAGCTGTGACAGAGGGCACTCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3855 PPP1R16A::ADCK5 ENSG00000160972.10::ENSG00000173137.12 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R16A ENSG00000160972.10 protein_coding + + chr8:144477969-144502121:+ chr8:144490212:+ chr8:145703352-145727504:+ chr8:145715595:+ ADCK5 ENSG00000173137.12 protein_coding + + chr8:144373101-144393242:+ chr8:144390671:+ chr8:145596790-145618457:+ chr8:145615871:+ chr8:144493220 chr8:144386487 NA NA chr8:145718603 chr8:145611687 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |ABC1_atypical_kinase-like_domain(100%) |ABC1(100%) 0 2 2 189 110 ENST00000526183.5 ENST00000308860.11 downstream upstream duplicates(2),mismatches(1) CGtCGGTCGGCGCGGGGCGCGAG___GTACTGGCACACGGATGAGGAGTCGTAGAAGAGGGGCCTGCAGATTGTGCTCTCAGCAAGCCTGTCGTCTAGTGGAAG...CCGGGACACAGAGCCCACGTGTGGACACCGCTGTGGGTTGGTGGCAGGGGTCcAGCAGGTGCCATCAGGCACATGAACGGTGGAGTCTTCAAAG|GTCTCTGAAGGTCGGCCTGCAGATCTCCCTGGACTACTGGTGGTGCACCAATGTTGTCCTTCGAGGGGTGGAAGAG___AACAGCCCAGGCTACTTGGAGGTGATGTCTGCGTGTCACCAGCGGGCGGCTGATGCCCTGGTGGCAGGGGCCATCAGCAACGGGGGCCTCTACGTGAAGCTGGGCCAGGGGCTGTGCTCCTTCAACCACCTGCTTCCCCCCGAGTATACCCGGACCCTGCGCGTGCTAGAGGACAGGGCCCTCAAGCGGGGCTTCCAGGAG___GTGGATGAGTTGTTCCTTGAGGACTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Uncharacterized aarF domain-containing protein kinase 5 Atypical ABC1 ABC1-D Q3MIX3 TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 145715595|145715595 TRUE|TRUE 145615871|145614463 TRUE|FALSE YES 5UTR-CDS TRUE Breast BREAST no_match 144490212|144490212 TRUE|TRUE 144390671|144389263 TRUE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3860 RNLS::ATAD1 ENSG00000184719.13::ENSG00000138138.14 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNLS ENSG00000184719.13 protein_coding - - chr10:88273864-88584530:- chr10:88572903:- chr10:90033621-90344287:- chr10:90332660:- ATAD1 ENSG00000138138.14 protein_coding - - chr10:87751512-87841361:- chr10:87814612:- chr10:89511269-89601118:- chr10:89574369:- chr10:88390915,chr10:88390943,chr10:88390893,chr10:88390939,chr10:88390911,chr10:88390883,chr10:88390938,chr10:88390937,chr10:88390933,chr10:88390934,chr10:88390929,chr10:88390924,chr10:88390918 chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319,chr10:87816319 NA NA chr10:90150672,chr10:90150700,chr10:90150650,chr10:90150696,chr10:90150668,chr10:90150640,chr10:90150695,chr10:90150694,chr10:90150690,chr10:90150691,chr10:90150686,chr10:90150681,chr10:90150675 chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076,chr10:89576076 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site deletion high none Flavin_containing_amine_oxidoreductase(37%),NAD(P)-binding_Rossmann-like_domain(100%)|AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%) Amino_oxidase(2%),NAD_binding_8(100%)|AAA(100%),AAA_lid_3(100%),RuvB_N(100%) 0 1 1 8 9 ENST00000481793.1 ENST00000681602.1 upstream downstream mismatches(2),multimappers(1) GAtTCAG___GTGCAGAAGTCTACTTCAGACATCGTGTGACACAGATCAACCTAAGAGATGACAAATGGGAAGTATCCAAACAAACAGGCTCCCCTGAGCAGTTTGATCTTATTGTTCTCACAATGCCAGTTCCTGAGATTCTGCAGCTTCAAGGTGACATCACCACCT|GTTAACATTCAAGATGGTACATGCTGAAGCCTTTTCTCGTCCTTTGAGTCGGAATGAAGTTGTTGGTTTAATTTTCCGTTTGACAATATTTG...GTTTAGATGATGTCATTACGGATCTGAAAGACACAGTCATCTTACCTATCAAAAAGAAACATTTGTTTGAGAATTCCAGGCTTCTGCAGCCTCCAAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3861 ZNF766::BSPH1 ENSG00000196214.11::ENSG00000188334.3 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF766 ENSG00000196214.11 protein_coding + + chr19:52269587-52296046:+ chr19:52269631:+ chr19:52772840-52799299:+ chr19:52772884:+ BSPH1 ENSG00000188334.3 protein_coding - - chr19:47968046-47992170:- chr19:47968209:- chr19:48471303-48495427:- chr19:48471466:- chr19:52272936 chr19:47969440 NA NA chr19:52776189 chr19:48472697 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion medium none none none 0 55 0 179 148 ENST00000439461.6 ENST00000344839.3 downstream downstream duplicates(2),mismatches(12) TGGCGTGGAGATATGGCGCAACTGCGGCGC|GTTTGCTTGCATCTGCTGGCTATCAGATACAGACAAAACATGATtGATGCATCCAGCAGTAATAATCTTCTTCCTGAAAGCCATGGATTCTTCAGCAG___CCCCAGCAAACTAATACAGAAGACAAAGGAGAAAGAAGACAGCAGCATGCAGCTTACTAGAAATGGCCA MAQLRR|vclhllairyrqnmidasssnnllpeshgffsspskliqktkekedssmqltrng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3864 RORA::ANXA2 ENSG00000069667.16::ENSG00000182718.18 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE TRUE 338 TRUE 659 TRUE 239 RORA ENSG00000069667.16 protein_coding - - chr15:60488284-61229302:- chr15:60592387:- chr15:60780483-61521501:- chr15:60884586:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60355998:- chr15:60639333-60695082:- chr15:60648197:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Annexin(59%) |Annexin(12%) 7 6 3 43 17039 ENST00000449337.6 ENST00000559818.6 upstream downstream duplicates(2),mismappers(2),mismatches(2) GGCGGCGGCGGCGCGGCGGCGGCAGAGGGGGCTCCGGGGTCGGACCATCCGCTCTCCCTGCGCTCTCCGCACCGCGGCTTAAATGATGTATTTTGTGATCGCAGCGATGAAAG|TGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAG___GGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGATTGACCAAGATGCTCGG___GATCTCTATGACGCTGG MMYFVIAAMK|vYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3865 RORA::ANXA2 ENSG00000069667.16::ENSG00000182718.18 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE FALSE NA TRUE 659 TRUE 239 RORA ENSG00000069667.16 protein_coding - - chr15:60488284-61229302:- chr15:60592387:- chr15:60780483-61521501:- chr15:60884586:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60354213:- chr15:60639333-60695082:- chr15:60646412:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Annexin(50%) |Annexin(12%) 0 1 2 43 14755 ENST00000449337.6 ENST00000559818.6 upstream downstream none CGGCGCGGCGGCGGCAGAGGGGGCTCCGGGGTCGGACCATCCGCTCTCCCTGCGCTCTCCGCACCGCGGCTTAAATGATGTATTTTGTGATCGCAGCGATGAAAG|GGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGATTGACCAAGATGCTCGG___GATCTCTATGACGCTGGAGTGAAGAGGAAAGGAACTGATGTTCCCA...AGGTACAAGAGTTACAGCCCTTATGACATGTTGGAAAGCATCAGGAAAGAGGTTAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGG___TTCAGTGCATTCA MMYFVIAAMK|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3866 RORA::ANXA2 ENSG00000069667.16::ENSG00000182718.18 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE FALSE NA TRUE 659 TRUE 239 RORA ENSG00000069667.16 protein_coding - - chr15:60488284-61229302:- chr15:60678657:- chr15:60780483-61521501:- chr15:60970856:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60355998:- chr15:60639333-60695082:- chr15:60648197:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Annexin(59%) |Annexin(12%) 1 0 1 6 17039 ENST00000335670.11 ENST00000559818.6 upstream downstream duplicates(1),mismatches(1) GTCAGCTCCGGCAGCCCCCGACCCCGCCGCCAaCGAGCCAGGCAGCAGCGGCGCGGACGCGGaCGCCGGCTCCAGGGAGcCCCCcCTcAACCAGGAATCCGCCCGCAAGAGCGAGCCGCCTGCCCCGGTGCGCAGACAGAGCTATTCCAGCACCAGCAGAG___GTATCTCAGTAACGAAGAAGACACATACAT|TGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAG___GGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGAT SAPAAPDPAAnEPGSSGADAdAGSREpPLNQESARKSEPPAPVRRQSYSSTSRGISVTKKTHT|lYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3890 LURAP1L-AS1::TBC1D5 ENSG00000235448.3::ENSG00000131374.15 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LURAP1L-AS1 ENSG00000235448.3 lncRNA - - chr9:12698554-12814377:- chr9:12759552:- chr9:12698554-12814376:- chr9:12759551:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623913:- chr3:17198654-18486309:- chr3:17665405:- chr9:12713957,chr9:12713965 chr3:17731359,chr3:17731359 NA NA chr9:12713956,chr9:12713964 chr3:17772851,chr3:17772851 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation low none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 1 0 1 9 55 ENST00000417638.1 ENST00000696125.1 upstream downstream none AGAACAATGGTTCCTGAGAGTGACAATATCTGAGGAAAGAGCAGGTCCTGCAACCAACGAGAAATTCTCCTGCAGCATTTCAAAGCAG___GCAAGATGGAGAG...ATATGAGAAGAAAAAAAGAATAACTTCTATGTGGAAAA|TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3893 AASS::CADPS2 ENSG00000008311.16::ENSG00000081803.17 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AASS ENSG00000008311.16 protein_coding - - chr7:122064583-122144308:- chr7:122098450:- chr7:121704637-121784362:- chr7:121738504:- CADPS2 ENSG00000081803.17 protein_coding - - chr7:122318411-122886759:- chr7:122379442:- chr7:121958465-122526813:- chr7:122019496:- chr7:122094692,chr7:122094699 chr7:122384249,chr7:122384253 NA NA chr7:121734746,chr7:121734753 chr7:122024303,chr7:122024307 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Alanine_dehydrogenase/PNT__N-terminal_domain(100%),Saccharopine_dehydrogenase_NADP_binding_domain(60%)| AlaDh_PNT_C(100%),AlaDh_PNT_N(100%),Sacchrp_dh_NADP(6%)|MUN(50%) 2 0 0 211 76 ENST00000679419.1 ENST00000313070.11 upstream downstream none CTGAAATAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCATCAG|CAACAGTACCATTCAAAAATAGATGATCTGATCGACAA MKNQIEQLGKKYNINPVSMDICKQEEKLGFLVAKQDLVIs|nstiqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 121726066 FALSE 122377122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3898 ENSG00000286125::NAPSB ENSG00000286125.3::ENSG00000291230.1 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 662 TRUE 240 ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56790078:+ chr19:57181309-57334763:+ chr19:57301446:+ NAPSB ENSG00000291230.1 lncRNA - - chr19:50333796-50344806:- chr19:50335181:- chr19:50837053-50848063:- chr19:50838438:- chr19:56797255,chr19:56797254 chr19:50336909,chr19:50336910 NA NA chr19:57308623,chr19:57308622 chr19:50840166,chr19:50840167 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 23 0 ENST00000652504.1 ENST00000527780.7 downstream downstream none CAGAGTCCTGAGCAAGGAAACCTAGAAGGGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCaAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATG|GGACCCTGAAGTGGCTGATGaAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3899 ENSG00000286125::NAPSB ENSG00000286125.3::ENSG00000291230.1 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 662 TRUE 240 ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56790078:+ chr19:57181309-57334763:+ chr19:57301446:+ NAPSB ENSG00000291230.1 lncRNA - - chr19:50333796-50344806:- chr19:50336705:- chr19:50837053-50848063:- chr19:50839962:- chr19:56797255,chr19:56797254 chr19:50336909,chr19:50336910 NA NA chr19:57308623,chr19:57308622 chr19:50840166,chr19:50840167 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 23 2 ENST00000652504.1 ENST00000527780.7 downstream downstream mismatches(1) GGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCCAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATG|ATTGGTGGAATCAAGGGTGCATCCGTGATTTTCGGGGAAGCTCTGTGGGAATCCAGCCTGGTCTTCACTGTTTCCCGCCCCGATGGGATATTGGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3900 ENSG00000286125::NAPSB ENSG00000286125.3::ENSG00000131401.14 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 663 TRUE 241 ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56790078:+ chr19:57181309-57334763:+ chr19:57301446:+ NAPSB ENSG00000131401.14 transcribed_unprocessed_pseudogene - - chr19:50333877-50344761:- chr19:50335181:- chr19:50837134-50848018:- chr19:50838438:- chr19:56797255,chr19:56797254 chr19:50336909,chr19:50336910 NA NA chr19:57308623,chr19:57308622 chr19:50840166,chr19:50840167 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 23 0 ENST00000652504.1 ENST00000562112.5 downstream downstream none CAGAGTCCTGAGCAAGGAAACCTAGAAGGGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCaAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATG|GGACCCTGAAGTGGCTGATGaAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3901 ENSG00000286125::NAPSB ENSG00000286125.3::ENSG00000131401.14 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 663 TRUE 241 ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56790078:+ chr19:57181309-57334763:+ chr19:57301446:+ NAPSB ENSG00000131401.14 transcribed_unprocessed_pseudogene - - chr19:50333877-50344761:- chr19:50336705:- chr19:50837134-50848018:- chr19:50839962:- chr19:56797255,chr19:56797254 chr19:50336909,chr19:50336910 NA NA chr19:57308623,chr19:57308622 chr19:50840166,chr19:50840167 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 23 2 ENST00000652504.1 ENST00000562112.5 downstream downstream mismatches(1) GGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCCAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATG|ATTGGTGGAATCAAGGGTGCATCCGTGATTTTCGGGGAAGCTCTGTGGGAATCCAGCCTGGTCTTCACTGTTTCCCGCCCCGATGGGATATTGGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3920 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE TRUE 340 FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78386948:+ chr16:78133297-79246564:+ chr16:78420845:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77816921:+ chr16:77822461-78014004:+ chr16:77850818:+ chr16:78410328,chr16:78410324 chr16:77809665,chr16:77809658 NA NA chr16:78444225,chr16:78444221 chr16:77843562,chr16:77843555 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%),short_chain_dehydrogenase(57%)|Alcohol_dehydrogenase_GroES-like_domain(84%),Zinc-binding_dehydrogenase(100%) KR(87%),WW(100%),adh_short(24%),adh_short_C2(87%)|ADH_N(22%),ADH_zinc_N(100%),ADH_zinc_N_2(100%) 21 42 22 206 73 ENST00000683929.1 ENST00000302536.3 downstream upstream duplicates(5),mismappers(1),mismatches(1),multimappers(1) TTGCCCTCCATGGTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG___CATAAAGCCAAGGTAGAAaCAATGACCCTGGACCTCGCTCTGCTCCGTAGCGTGCAGCATTTTGCTGAAGCATTCAAGGCCAAGAATGT|TGGATTAAACTTCATTGACTTGATGGTGCGACAAGGGAATATTGACAACCCTCCCAAGACTCCCCTGGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGGACAGCGTGAAAGGATATGAG___ATTGGAGACCGTGTCATGGCATTTGTCAATTACAATGCCTGGGCAGAGGTGGTCTGCA ALHGAHVILACRNMARASEAVSRILEEWHKAKVEtMTLDLALLRSVQHFAEAFKAKNv|GLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 FALSE,FALSE 78005747,77850818 FALSE,TRUE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3922 POC5::CERT1 ENSG00000152359.15::ENSG00000113163.19 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE FALSE TRUE 342 FALSE NA FALSE NA POC5 ENSG00000152359.15 protein_coding - - chr5:75674124-75717448:- chr5:75685207:- chr5:74969949-75013273:- chr5:74981032:- CERT1 ENSG00000113163.19 protein_coding - - chr5:75356345-75512138:- chr5:75426478:- chr5:74652170-74807963:- chr5:74722303:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |START_domain(100%) |HMG-CoA_red(100%),START(100%) 13 26 19 125 346 ENST00000428202.7 ENST00000644912.1 upstream downstream duplicates(2),low_entropy(3),mismatches(3) AAATAATAAAAAGGAAGAGTATGGTCCTGGTGTTCAAGGAAAAGAACATTCTGCTCATTTGGATCCTTCAGCTCCTCCGATGCCCTTACCAGTTACATCACCACTGCTGCCATCCCCACCAGCCGCCGTCGGAGGAGCCAGCGCGACTGCCGTTCCCTCAGCTGCTTCGATGACTTCTACCAGGGCTGCTTCCGCATCTTCTGTTCACGTTCCTGTTTCTGCTCTTGGTGCAGGATCTGCAGCTACTGCTGCATCAGAAGAAATG|ACTGAATCTGGATATGGATCTGAATCCAGCTTGCGTCGACATGGCTCAATGGTGTCCCTGGTGTCTGGAGCAAGTGGCTACTCTGCAACATCCACCTCTTCATTCAAG___AAAGGCCACAGTTTACGTGAGAAGTTGGCTGAAATGGAAACATTTAGAGACATCTTATGTAGACAAGTTGACA NNKKEEYGPGVQGKEHSAHLDPSAPPMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEM|TESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Collagen type IV alpha-3-binding protein Atypical Col4A3BP Q9Y5P4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3923 RAP1GDS1::TSPAN5 ENSG00000138698.15::ENSG00000168785.8 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAP1GDS1 ENSG00000138698.15 protein_coding + + chr4:98261384-98443858:+ chr4:98434062:+ chr4:99182535-99365009:+ chr4:99355213:+ TSPAN5 ENSG00000168785.8 protein_coding - + chr4:98470367-98658611:- chr4:98588546:+ chr4:99391518-99579762:- chr4:99509697:+ chr4:98435808,chr4:98435805 chr4:98584004,chr4:98583998 NA NA chr4:99356959,chr4:99356956 chr4:99505155,chr4:99505149 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Armadillo/beta-catenin-like_repeat(100%)| Arm(100%)| 18 6 24 265 43 ENST00000408927.8 unknown downstream upstream duplicates(5),mismappers(3),mismatches(1) AGATCATGCTGGTGTGATGGGGGAGTCAAACAGACTGCTGTCTGCCCTTATACGACACAGTAAATCAAAA___GATGTAATTAAAACCATTGTGCAGAGTGGTGGCATCAAGCATCTAGTTACCATGGCAACTAGTGAACATGTAATAATGCAGAATGAAGCTCTTGTTGCTTTGGCATTAATAGCAGCTTTAGAATTGG|GTCCTTCATATTATTTCCACTCATTATTGTTGAAATCTTCCAGTTTTCTCATTATTCCCAATGCTTCAAAATAAAAGAGAAATTTAGTAAGATTAAATAATGGAAAAAGGAAGCCAAAGAATATCCAGTTACGATGTTCAAAGAGATAAGCTGGCCCTGAGGCATATTTATCTGTCCTAAAAGAACTTCACCAAAGAGAAATTTAAGCTCTACAATAACTTGTGTGTGGC DHAGVMGESNRLLSALIRHSKSKDVIKTIVQSGGIKHLVTMATSEHVIMQNEALVALALIAALEL|gpsyyfhslllksssfliipnask* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAP1, GTP-GDP dissociation stimulator 1 1 Yes T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 3928 ENSG00000224481::LINC01731 ENSG00000224481.4::ENSG00000234283.1 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000224481 ENSG00000224481.4 lncRNA + + chr1:148295895-148344638:+ chr1:148303555:+ chr1:147768002-147816766:+ chr1:147775662:+ LINC01731 ENSG00000234283.1 lncRNA - - chr1:148271884-148280749:- chr1:148273083:- chr1:147744014-147752855:- chr1:147745213:- NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site inversion high none none none 5 3 8 50 26 unknown ENST00000428035.1 downstream downstream duplicates(1) TCTCAGGTTTTCCGAGGCTTTGGAGCCTGCACAATTGTTCTACAAAAGGCAGTAGCTCCGCCGAACGTTGGATCGTCCCTTGGTCTGGTGATACCAGAACGAGAGTTGACTGTGTGTCTCAGTCGGTTGGTATGCTTGCTTCCAAGCCTGGAG|AAGCATGCCATACCTAAGACCTACTACCCTGAGAAGCAGTGAAGTGCTCCTGGGGCCCACCAAGGCCACACAAGTCAAGGAGTGGATGGCCTTGCTCCAGCTACTGCTCAGATCACCTTTGCAAGATGACATTGTGTTGGGAGATGGTCATCAGAGCCAGGGCCATGGAAGATGCTGTCAGGAG___GCACGAGGAAAGGCTATGGGAGCACAAAGCAAGAAAGTGGCCTTCTGCAAGCCAGGAAGAGAGGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3930 ZNF461::ZNF850 ENSG00000197808.14::ENSG00000267041.6 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 671 TRUE 242 ZNF461 ENSG00000197808.14 protein_coding - - chr19:36636618-36666853:- chr19:36656448:- chr19:37127520-37157755:- chr19:37147350:- ZNF850 ENSG00000267041.6 protein_coding - - chr19:36714383-36772825:- chr19:36762431:- chr19:37205285-37263727:- chr19:37253333:- chr19:36655887,chr19:36655892 chr19:36762680,chr19:36762682 NA NA chr19:37146789,chr19:37146794 chr19:37253582,chr19:37253584 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none KRAB_box(100%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) KRAB(100%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 4 5 3 57 25 ENST00000588268.6 ENST00000589390.5 upstream downstream duplicates(1),mismatches(1) GTTGGAGAATTATAGCAACTTGGTGTCACTTG___GACTTTCTGTTTCTAAGCCAGCCGTAATCTCCTCATTGGAGCAAGGGAAGGAGCCCTGGATGGTTGTGAGGGAAGAGACAGGAAGATGGTGCCCAG|GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG___GTCTCTCTATCCCAAAGCCTGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGATGGTTTCAAGGGACGTGCT LENYSNLVSLGLSVSKPAVISSLEQGKEPWMVVREETGRWCP|gvghvpgsvyrllsggmgvpgrcsegliqrcndgelqqpgltrslypka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3931 ZNF461::ZNF850 ENSG00000197808.14::ENSG00000267041.6 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 671 TRUE 242 ZNF461 ENSG00000197808.14 protein_coding - - chr19:36636618-36666853:- chr19:36658299:- chr19:37127520-37157755:- chr19:37149201:- ZNF850 ENSG00000267041.6 protein_coding - - chr19:36714383-36772825:- chr19:36762431:- chr19:37205285-37263727:- chr19:37253333:- chr19:36655887,chr19:36655892 chr19:36762680,chr19:36762682 NA NA chr19:37146789,chr19:37146794 chr19:37253582,chr19:37253584 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none KRAB_box(98%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) KRAB(6%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 1 54 25 ENST00000588268.6 ENST00000589390.5 upstream downstream none AACACCTTCTTTGGATTGAGTTTCTTCCAGAGGGAACGAAGAAGAGGATTAAATAATACATTCAATTCTAAAATAAGACATGGCCCAT___GAGTTGGTGATGT...CCTGAACCCAGCGCAGAGGAATTTGTACAAGGAGGTGATGTTGGAGAATTATAGCAACTTGGTGTCACTTG|GGGTTGGTCATGTTCCAGGATCTGTCTATAGACTTCTCTCAGGAGGAATGGGAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG___GTCTCTCTATCCCAAAGCCTGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGATGGTTTCAAGGGACGTGC LNPAQRNLYKEVMLENYSNLVSL|gvghvpgsvyrllsggmgvpgrcsegliqrcndgelqqpgltrslypka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3933 KCTD21::GAB2 ENSG00000188997.8::ENSG00000033327.13 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE TRUE 344 TRUE 672 TRUE 243 KCTD21 ENSG00000188997.8 protein_coding - - chr11:78171249-78188626:- chr11:78186681:- chr11:77882295-77899672:- chr11:77897727:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78223676:- chr11:77926339-78129394:- chr11:77934722:- chr11:78179546,chr11:78179556 chr11:78224346,chr11:78224353 NA NA chr11:77890592,chr11:77890602 chr11:77935392,chr11:77935399 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 2 3 4 15 210 ENST00000526208.5 ENST00000361507.5 upstream downstream duplicates(1) GAAGGAATGAATTCCAGCTGAGAGACCTGGCCGATGCATGGGATTTGTCTTCAAGGTCCAGGCAGAGGGGATGGCAGATGCCAAATTGCAGAAGTCGAAGAGGGCCCAGTATGGTTGGTCTGTAAA|CCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATGTGCCCATGAATCCAGGTTCTTCCACCCTGTTGGCCATGGAACGAGCAGGTGATAATTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCATCACTTTGACTCACTTGGCTACCCATCAACAACCCTTCCTGTGCACCGAGGCCCCAGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3934 KCTD21::GAB2 ENSG00000188997.8::ENSG00000033327.13 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE TRUE 345 TRUE 672 TRUE 243 KCTD21 ENSG00000188997.8 protein_coding - - chr11:78171249-78188626:- chr11:78188573:- chr11:77882295-77899672:- chr11:77899619:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78223676:- chr11:77926339-78129394:- chr11:77934722:- chr11:78179546,chr11:78179556 chr11:78224346,chr11:78224353 NA NA chr11:77890592,chr11:77890602 chr11:77935392,chr11:77935399 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 0 15 0 17 210 ENST00000340067.4 ENST00000361507.5 upstream downstream mismatches(1) GGCCGCTCGCGGAGGGAGAGGCTGCAGAGCGAGGGCAGGAG|CCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATGTGCCCATGAATCCAGGTTCTTCCACCCTGTTGGCCATGGAACGAGCAGGTGATAATTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3936 NAALADL2::NLGN1 ENSG00000177694.16::ENSG00000169760.18 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 673 TRUE 244 NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:174459312:+ chr3:174156363-175528336:+ chr3:174177102:+ NLGN1 ENSG00000169760.18 protein_coding + + chr3:173396284-174294372:+ chr3:174275315:+ chr3:173114074-174012162:+ chr3:173993105:+ chr3:174472282,chr3:174472279 chr3:174267985,chr3:174267979 NA NA chr3:174190072,chr3:174190069 chr3:173985775,chr3:173985769 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Carboxylesterase_family(70%) |Abhydrolase_3(0%),COesterase(0%) 1 0 4 10 89 ENST00000481679.5 ENST00000695368.1 downstream upstream none CACCTGTTGTATTGCTTGGTATCCAATACTTAATAAATGTTATTTTCCTTTTCTTTCCCTCTCCCTTTTCATCATTTTCTTGTTCTCCACAGTTTTCTGAA...GGTCCATGAAATCTGATGGTGTAGGAAATGCTCATCCAGTATCTGCAGTGCTGTTTAAAGAGAAAAGGCCCAG|GTTTCTTGAGTACAGGCGATCAGGCTGCAAAGGGGAACTATGGACTCCTTGATCTCATACAAGCTTTAAGATGGACTAGTGAAAACATTGGATTCTTTGGTGGTGACCCCTTAAGAATCACTGTTTTTGGATCTGGTGCTGGGGGTTCA...AAGGTAACCGTTGGAGCAATTCAACCAAAG___GACTTTTTCAACGAGCAATAGCTCAAAGTGGAACAGCCCTTTCCAGCTGGGCTGTTAGTTTTCAACCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Prostate adenocarcinoma BREAST,PROSTATE no_match 174577240|174455536,174577240 FALSE|FALSE,FALSE 173322069|173322069,173993105 FALSE|FALSE,TRUE PARTIALLY,YES CDS-5UTR,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3937 NAALADL2::NLGN1 ENSG00000177694.16::ENSG00000169760.18 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 673 TRUE 244 NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:174441032:+ chr3:174156363-175528336:+ chr3:174158822:+ NLGN1 ENSG00000169760.18 protein_coding + + chr3:173396284-174294372:+ chr3:174275315:+ chr3:173114074-174012162:+ chr3:173993105:+ chr3:174472282,chr3:174472279 chr3:174267985,chr3:174267979 NA NA chr3:174190072,chr3:174190069 chr3:173985775,chr3:173985769 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Carboxylesterase_family(70%) |Abhydrolase_3(0%),COesterase(0%) 0 2 3 8 89 ENST00000481679.5 ENST00000695368.1 downstream upstream duplicates(1),mismatches(1) CGGAGGCGCCGGGGCCGCCGCTCGGGGGCGAGGGTTCGCGCCGCGGCTCGCGCCCGCTTCTCCCGCTTTACGGCTGCTGAAAATCCGGCCTGGCCCGGCAGCCGTACCGCAGACGAGCCCGCGCCCGCGCCGCTCAG|GTTTCTTGAGTACAGGCGATCAGGCTGCAAAGGGGAACTATGGACTCCTTGATCTCATACAAGCTTTAAGATGGACTAGTGAAAACATTGGATTCTTTGGTGGTGACCCCTTAAGAATCACTGTTTTTGGATCTGGTGCTGGGGGTTCA...AAGGTAACCGTTGGAGCAATTCAACCAAAG___GACTTTTTCAACGAGCAATAGCTCAAAGTGGAACAGCCCTTTCCAGCTGGGCTGTTAGTTTTCAACCTGCAAAATATGCTAGAATGTTG...ACCTGTGATTGATGGTGATGTAATACCAGACGACCCCCAGATATTGATGGAGCAAGGAGAGTTTCTCAACTATGATATAATGTTAGGAGTGAACCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Prostate adenocarcinoma BREAST,PROSTATE no_match 174577240|174455536,174577240 FALSE|FALSE,FALSE 173322069|173322069,173993105 FALSE|FALSE,TRUE PARTIALLY,YES CDS-5UTR,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3981 IQGAP1::FAM174B ENSG00000140575.13::ENSG00000185442.13 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 349 FALSE NA FALSE NA IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90390873:+ chr15:90931474-91045471:+ chr15:90934105:+ FAM174B ENSG00000185442.13 protein_coding - - chr15:92617448-92809884:- chr15:92630345:- chr15:93160678-93353114:- chr15:93173575:- chr15:90397907,chr15:90397889,chr15:90397906 chr15:92659238,chr15:92659238,chr15:92659239 NA NA chr15:90941139,chr15:90941121,chr15:90941138 chr15:93202468,chr15:93202468,chr15:93202469 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Calponin_homology_(CH)_domain(4%)|Protein_of_unknown_function_(DUF1180)(28%) CH(0%)|DUF1180(0%) 20 19 30 937 91 ENST00000268182.10 ENST00000327355.6 downstream downstream duplicates(10),low_entropy(1),mismatches(6) CTACCGCCGTCCGCGCCTCCAAGGTTTCACGGCTTCCTCAGCAGAGACTCGGGCTCGTCCGCCATGTCCGCCGCAGACGAGGTTGACGGGCTGGGCGTGGCCCGGCCGCACTATGGCT___CTGTCCTGGATAATGAAAGACTTACTGCAGAGGAGATGGATGAAAGGAGACGTCAGAACGTGGCTTATGAGTACCTTTGTCATTTGGAAGAAGCGAAGAG|GTCGGGAAAGAGGTTAAAGAAGACACGCAAGTATGATATCATCACCACTCCAGCAGAGCGAGTGGAAATGGCGCCACTAAATGAAGAGGATGATGAAGATGAGGACTCCACAGTATTCGACATCAAATACAG___GTAAAACCTGTTTCCCAGCCTGGTGGCATCCTGTGGAAAGTTGGTCAGCTGCAACCTGGGGTGTGAAGGACTGGACCTGGAAGCCCTCTTG MSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKr|SGKRLKKTRKYDIITTPAERVEMAPLNEEDDEDEDSTVFDIKYR* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3983 LUZP1::TMCO4 ENSG00000169641.15::ENSG00000162542.14 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 350 FALSE NA FALSE NA LUZP1 ENSG00000169641.15 protein_coding - - chr1:23084030-23177808:- chr1:23168766:- chr1:23410523-23504301:- chr1:23495259:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19683444:- chr1:20008733-20126438:- chr1:20009937:- chr1:23122400,chr1:23122408 chr1:19693507,chr1:19693512 NA NA chr1:23448893,chr1:23448901 chr1:20020000,chr1:20020005 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Protein_of_unknown_function_(DUF726)(5%) |DUF726(0%) 3 36 0 79 158 ENST00000302291.9 ENST00000294543.11 upstream downstream duplicates(2),mismatches(1) GGAGGCGCCGGTCGCTGGCAGCTGAGCGGCGGAACCCTTCGCTGGCGGGAGCGCGGTTCGGGGCCGCAGAG|GTCAGCGGCCACCTGGACTATGCCAAGCAGATGGATGCCATCCTGAAGGCCGTGGGCATCCGCACCAAGCCAGGCTGGGACGAGAAGGGGCTCTTGCTGGCCCCAGGCTGCCTGCCCTCCGAGGAGCCTCGCCAGGCAGCAGCTGCCGCCTCATCAGGCGAGACCCCCCACCAGGTTGGGCAAACCCAGGGTCCCATATCCGGAGACACCTCCAAATTGGCCATGTCCACAGACCCCAGCCAAGCCCAGGTGCCAGTAGGGCTGGACCAGTCTGAAGGGGCCTCCCTTCCTGCTGCTGCCAGCCCTGAAAGGCCCCCCATCTGCAGCCATGGCATGGACCCCAACCCACTGGGCTGCCCCGATTGTGCCTGCAAGACCCAGGGCCCCAGCACGGGGCTGGACTGACCACAGCAGGGGACCTGAGCCGTCTTCCCCAGTCTCCATATGCAGCTCTCTCTTATACCCTCGGGTTCCTCCCAGGAGCTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 3984 LRBA::SH3D19 ENSG00000198589.15::ENSG00000109686.20 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 351 FALSE NA FALSE NA LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150761783:- chr4:151185587-151936879:- chr4:151682935:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151149561:- chr4:152023903-152246757:- chr4:152070713:- chr4:150745207,chr4:150745213 chr4:151150943,chr4:151150946 NA NA chr4:151666359,chr4:151666365 chr4:152072095,chr4:152072098 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Concanavalin_A-like_lectin/glucanases_superfamily(100%),Neurobeachin-like__DUF1088(1%),Neurobeachin/BDCP__DUF4704_alpha_solenoid_region(100%)|SH3_domain(100%),Variant_SH3_domain(100%) DUF1088(0%),DUF4704(100%),Laminin_G_3(100%)|Ribosomal_S3Ae(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 4 3 6 244 354 ENST00000357115.9 ENST00000604030.7 upstream downstream multimappers(1) AAGAACTGCTTATAGAAGGAACAA___GTCTGGTTTGCATGAAGTCGAGTAGTTCAGTTGTGGAATTGGTTATGCTACTGTGTTCTCAG___GAGTGGCAAAATTCTATTCAGAAGAATGCAGGCCTTGCTTTTATCGAACTTGTCAATGAAGGAAG|GAATCCAACCACCCAGGTCAAACAGGAGGTTTTGTGCGAGTACCCCCAAGGTTGCCACCGAG___ACCTGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAACCAAGGTGCCCCCTGAGAGACCACCTCCCCC ELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGr|npttqvkqevlceypqgchrdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Acute Myeloid Leukemia,Head and Neck squamous cell carcinoma,Colon adenocarcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HEAD_AND_NECK,COLON,BLADDER,BLADDER inexact 151935579,151682935,151935579,151682935,151656410,151842350 FALSE,TRUE,FALSE,TRUE,FALSE,FALSE 152060999,152070713,152070713,152070713,152147238,152096826 FALSE,TRUE,TRUE,TRUE,FALSE,FALSE YES,YES,YES,YES,YES,YES In-frame,Out-of-frame,In-frame,Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4005 TNS3::CDK14 ENSG00000136205.18::ENSG00000058091.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 352 FALSE NA FALSE NA TNS3 ENSG00000136205.18 protein_coding - - chr7:47275154-47582558:- chr7:47415094:- chr7:47314752-47622156:- chr7:47454692:- CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:90863175:+ chr7:90095738-90839905:+ chr7:90492490:+ chr7:47414945,chr7:47414957 chr7:90861085,chr7:90861073 NA NA chr7:47454543,chr7:47454555 chr7:90490400,chr7:90490388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none C2_domain_of_PTEN_tumour-suppressor_protein(17%)|Protein_kinase_domain(83%) C1_1(100%),PTEN_C2(0%)|PK_Tyr_Ser-Thr(51%),Pkinase(68%) 11 10 16 158 31 ENST00000457718.6 ENST00000380050.8 upstream upstream duplicates(13),mismatches(1) CGGGAAAGGACGCATAGGAGTGGTCATATCATCCTACATGCATTTCACCAACGTCTCAGCCAG___CGCCGACCAGGCCCTTGACAGGTTTGCAATGAAGAAGTTTTATGATGACAAAGTTTCAGCTTTAATGCAGCCTTCCCAAAAACG___GTATGTTCAGTTCCTCAGTGGGCTCCTGTCCGGATCGGTGAAAATGAATGCCTCTCCCCTGTTCCTGCATTTTGTCATCCTCCACGGCACCCCCAACTTCGACACAGGTGGAG|CTTCTCTTTTAAAAGGACTAAAACATGCTAACATAGTGCTACTTCATGACATCATCCATACCAAGGAGACGCTGACACTTGTGTTTGAATATGTG___CACACTGATTTATGTCAGTACATGGACAAGCACCCTGGGGGGCTGCATCCAGATAATGTGAAG___TTGTTTTTATTTCAGTTGCTGCGAGGTCTGTCTTACATCCACCAGCGTTATATTTTGCACAGAGACCTGAAACCACAGAACCTTCTGAT GKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKVSALMQPSQKRYVQFLSGLLSGSVKMNASPLFLHFVILHGTPNFDTGG|aSLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4006 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 353 TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260050:+ chr16:69221050-69342955:+ chr16:69293953:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(55%) |PH_17(41%) 4 7 16 48 167 ENST00000426654.6 ENST00000336278.9 downstream upstream duplicates(4),mismatches(1) GCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG___ATTCTCTGAAGTTACACCCATCACAGAATTTTCATAGAGCTGGACTATTGGAAG|ATTGATAGAGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAG___GCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGAC MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLE|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4007 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 354 TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260050:+ chr16:69221050-69342955:+ chr16:69293953:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(55%) |PH_17(41%) 0 5 8 67 167 ENST00000426654.6 ENST00000336278.9 downstream upstream duplicates(4) TCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCGCCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG|ATTGATAGAGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAG___GCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGAC MPSDFISLLSADLDLESPKSLYSR|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4008 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260171:+ chr16:69221050-69342955:+ chr16:69294074:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |PH_17(40%) 1 0 7 48 159 ENST00000426654.6 ENST00000336278.9 downstream upstream none CTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG___ATTCTCTGAAGTTACACCCATCACAGAATTTTCATAGAGCTGGACTATTGGAAG|GTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAG___GCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAG MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLE|gvg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4009 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260171:+ chr16:69221050-69342955:+ chr16:69294074:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |PH_17(40%) 0 1 5 67 159 ENST00000426654.6 ENST00000336278.9 downstream upstream none TCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCGCCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG|GTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAG___GCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAG MPSDFISLLSADLDLESPKSLYSR|gvg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4011 ZNF148::SNX4 ENSG00000163848.21::ENSG00000114520.11 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 355 TRUE 681 TRUE 246 ZNF148 ENSG00000163848.21 protein_coding - - chr3:125225669-125375325:- chr3:125277726:- chr3:124944513-125094169:- chr3:124996570:- SNX4 ENSG00000114520.11 protein_coding - - chr3:125446650-125520202:- chr3:125489463:- chr3:125165494-125239046:- chr3:125208307:- chr3:125273062,chr3:125273066 chr3:125490996,chr3:125490997 NA NA chr3:124991906,chr3:124991910 chr3:125209840,chr3:125209841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Zinc_finger__C2H2_type(66%)| zf-C2H2(69%)| 3 4 12 188 375 ENST00000360647.9 ENST00000251775.9 upstream downstream duplicates(5),mismatches(2) GTTGGAGCTGCCGCCGCCTGCAGTCGGTGACCGCGCGACTCGGaGCCCGCCCGCG___ATAAGCGgAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGTTCTCCCGCAAAA___ATCCTTACAATAAATG...CTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGAGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG___GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACATGAGAAGATTCATACTG|GCAGACTCCAGGTTAAAAGCGCTTAATGCAACATTCAGAGTGAAAAACCCAGACAA___GAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCATCTCACATCTTCTTCGAGTCAGAGCT___AGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGTCGAGTTTTCAG___TGAATGGAGTGCCATAGAAAAAGAAATGGGTGATGGACTGCAGAGTGCTGGT LGLKTPKSHVCEHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQKYLLQRHEKIHT|grlqvksa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 125093946 FALSE 125223588 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4012 ZNF148::SNX4 ENSG00000163848.21::ENSG00000114520.11 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 681 TRUE 246 ZNF148 ENSG00000163848.21 protein_coding - - chr3:125225669-125375325:- chr3:125277726:- chr3:124944513-125094169:- chr3:124996570:- SNX4 ENSG00000114520.11 protein_coding - - chr3:125446650-125520202:- chr3:125480319:- chr3:125165494-125239046:- chr3:125199163:- chr3:125273062,chr3:125273066 chr3:125490996,chr3:125490997 NA NA chr3:124991906,chr3:124991910 chr3:125209840,chr3:125209841 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Zinc_finger__C2H2_type(66%)| zf-C2H2(69%)| 0 1 4 188 278 ENST00000360647.9 ENST00000251775.9 upstream downstream duplicates(3),mismatches(1) CTTGGTTTGAAAACCCCTAAATCTCACGTTTGTGcGCACTGCAATGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATTCATACAG___GTGAAAAACCATTTCAATGTAGTCAATGTGACATGCGTTTCATACAGAAGTACCTGCTTCAGAGACATGAGAAGATTCATACTG|GAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCATCTCACATCTTCTTCGAGTCAGAGCT___AGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGTCGAGTTTTCAG___TGAATGGAGTGCCATAGAAAAAGAAAT...TGCAGGAAACATGAACTTATGCAGTATGACTTGGAGATGGCTGCTCAGGACTTAGCATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGG___ACTGTGAG LGLKTPKSHVCaHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQKYLLQRHEKIHT|gdlltlstivmncslsshiffesele* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 125093946 FALSE 125223588 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4013 AGAP1::FGGY-DT ENSG00000157985.20::ENSG00000224609.8 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235717644:+ chr2:236402687-237040437:+ chr2:236626288:+ FGGY-DT ENSG00000224609.8 lncRNA - + chr1:59131932-59296491:- chr1:59293343:+ chr1:59597604-59762163:- chr1:59759015:+ chr2:235718137,chr2:235718214,chr2:235718213 chr1:59269628,chr1:59269628,chr1:59269624 NA NA chr2:236626781,chr2:236626858,chr2:236626857 chr1:59735300,chr1:59735300,chr1:59735296 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none Ras_family(19%)| Ras(9%)| 4 7 7 173 40 ENST00000304032.13 unknown downstream upstream duplicates(5),mismappers(1),mismatches(1) CATCGAAG___ATGCCTTCGTGAACAGCCAGGAATGGACGCTGAGTCGATCTGTCCCGGAGCTCAAAGTG___GGAATTGTGGGTAACTTGGCCAGCGGCAAGTCTGCCCTGGTGCACCGGTACCTGACGGGCACATATGTCCAGGAGGAGTCTCCGGAAG|GCAGGAAGTCCAATATCAAGTTGCTGGCATCTGGGGAGTGTCTTCTTCCTGTGTCATCCCATGGCAGAAG___AAAAAGTGTCACTCCCTGGAATAAATGAATCAAATGGAAGTAAATGGAAAAAAAAAAAAGGATTCATTCATTCGTAATAGGCAGTGTATCATAACTGAAAAAGATAGTGAAAATTGGTTTCAGACAAACCCAGG IEDAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPE|grksnikllasgecllpvsshgrrksvtpwnk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4017 KNTC1::CLIP1 ENSG00000184445.12::ENSG00000130779.22 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KNTC1 ENSG00000184445.12 protein_coding + + chr12:122527246-122626396:+ chr12:122610900:+ chr12:123011793-123110943:+ chr12:123095447:+ CLIP1 ENSG00000130779.22 protein_coding - + chr12:122271432-122422669:- chr12:122327593:+ chr12:122755979-122907216:- chr12:122812140:+ chr12:122612611,chr12:122612897,chr12:122612608 chr12:122321509,chr12:122321258,chr12:122321503 NA NA chr12:123097158,chr12:123097444,chr12:123097155 chr12:122806056,chr12:122805805,chr12:122806050 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Rough_deal_protein_C-terminal_region(73%)| Rod_C(77%)| 2 1 9 282 38 ENST00000333479.12 unknown downstream upstream duplicates(7),mismatches(2) CGAACATCCTAGCATCAATCAAAGAATTCAGAATTCATCTGGCACAGATTATCCTG___ATATTCATGCAGCAGCTAAAGAAATAGCCGAAGTCAATGAAATTA...GGGACATGTTGTTGGAAAAATGGCTATGCCCTTCAACAAAACCTGGTGAA___AAACCATCAGAATTATTTGAACTTCAAGAAGATGAAGCCCTACGAAG___AGTGCAGTATCTCCTCCTGTCTCGTCCAATTGATTATAGTTCAAGAATGCTGTTTGTATTTGCAACATCAACTACAACC|TGCAAGGCAGCAACAAGCACGGCCAAGATTAGAGGAACAAGCAGGCAAGCAGAGCTCAGGCAACGAAAGAACCTTTGTGACCTCTGGGAAACAAGCAGC...CCTCGACACAGAGCTCAGGCAAGCTACAACACAAGGAAATTCTCTCGCGTCACGTACTTTGGCTTTcTCGGCTTGCTTTCTCAGCTCCTCCAGCTCCTGCAGCAAGCCACTGTTCTCCTCCCGTGCGCCCTTCAG DMLLEKWLCPSTKPGEKPSELFELQEDEALRRVQYLLLSRPIDYSSRMLFVFATSTTT|ckaatstakirgtsrqaelrqrknlcdlwets NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4020 FGGY::AGAP1 ENSG00000172456.18::ENSG00000157985.20 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 684 TRUE 247 FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59378837:+ chr1:59762310-60276319:+ chr1:59844509:+ AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:236036561:+ chr2:236402687-237040437:+ chr2:236945205:+ chr1:59390781,chr1:59390779 chr2:235977972,chr2:235977969 NA NA chr1:59856453,chr1:59856451 chr2:236886616,chr2:236886613 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none FGGY_family_of_carbohydrate_kinases__N-terminal_domain(67%)|Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%) FGGY_N(24%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_5(100%),ArfGap(100%),PH(0%) 0 5 4 109 155 ENST00000495718.5 ENST00000304032.13 downstream upstream duplicates(5),mismatches(2) CCCAGTTCAACCACCATGAGCAGTCCTCCGAGGACATCTGGGCTGCGTGCTGTGTTGTCACAAAG___...TGGAAATGCAGGCCCCGAAACTTC?GTGGCTGAAAGAG___AACTTGAGAGAGATTTGCTGGGATAAGGCGGGACATTTCTTTGATCTCCCGGACTTCTTATCGTGGAAGGCAACAGGTGTCACAGCACG|AACAAGAAGAAAATTTTGAGTTTATCATTGTGTCCCTCACTGGCCAAACATGGCACTTTGAAGCCACGACGTATGAGGAGCGGGACGCCTGGGTCCAAGCCATCGAGAGCCAGATCCTGGCCAGCCTGCAGTCGTGCGAGAGCAGCAAGAACAAG___TCCCGGCTGACGAGCCAGAGCGAGGCCATGGCCCTGCAGTCGATCCGGAACATGCGCGGGAACTCCCACTGTG...AGCCCTCATGTGCATCGAATGCTCAGGGATCCACCGGAATCTTGGCACCCACCTTTCCCGAGTCCGATCTCTGGACCTGGATGACTGGCCAaTCGAGCTCATCAAGGTGATGTCATCCATCGGGAACGAGCTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4021 FGGY::AGAP1 ENSG00000172456.18::ENSG00000157985.20 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 684 TRUE 247 FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59378837:+ chr1:59762310-60276319:+ chr1:59844509:+ AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:236014805:+ chr2:236402687-237040437:+ chr2:236923449:+ chr1:59390781,chr1:59390779 chr2:235977972,chr2:235977969 NA NA chr1:59856453,chr1:59856451 chr2:236886616,chr2:236886613 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none FGGY_family_of_carbohydrate_kinases__N-terminal_domain(67%)|Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%) FGGY_N(24%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_5(100%),ArfGap(100%),PH(32%) 0 1 4 109 2 ENST00000495718.5 ENST00000418654.2 downstream upstream duplicates(3),mismatches(1) CCCAGTTCAACCACCATGAGCAGTCCTCCGAGGACATCTGGGCTGCGTGCTGTGTTGTCACAAAG___...TGGAAATGCAGGCCCCGAAACTTC?GTGGCTGAAAGAG___AACTTGAGAGAGATTTGCTGGGATAAGGCGGGACATTTCTTTGATCTCCCGGACTTCTTATCGTGGAAGGCAACAGGTGTCACAGCACG|CCAAACGCAAAGCATGGAAACTAAACCGTGTTGGTAGCCTGCGAAATATA...CTGCCTCTTCCCCTCTCATCCCCTGCCCGCCCCTTCCTTTCCAACACAGGCATGGAAATGCAATTTGCCCAAAGCCGCATGCTCCCTTATTGTGTTTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4022 ZFYVE9::LINC01562 ENSG00000157077.16::ENSG00000203356.2 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52142403:+ chr1:52607761-52814343:+ chr1:52608075:+ LINC01562 ENSG00000203356.2 lncRNA - + chr1:51195095-51235096:- chr1:51214771:+ chr1:51660767-51700768:- chr1:51680443:+ chr1:52180554,chr1:52180552 chr1:51195130,chr1:51195125 NA NA chr1:52646226,chr1:52646224 chr1:51660802,chr1:51660797 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 2 2 3 45 14 ENST00000287727.8 unknown downstream upstream duplicates(1),mismatches(1) CTCGGCGGCGCTCCTCCGGGATCCGCGTGGCTGCCGCGGCCCGGGCGCCGATGCGGCTGGGCGGGTGCCGGGCCTTAGCAGCAGTAGCAGCCGCAGCTGCGGCTACCGCAGCTCCTACAGGAGTGGGAGG?TTCGCGGCGGCGCCTGGGGCCGCGCCGGTGCCCTCCGGAGGAGGCTTTCGGCTCAGGGACGACCCCCGTGGCCATGCTGAAGCGGAGGCGGCCGCTGCTCGAG|GCTGAAGCTCATATGTTGTGACATACAAACTaCAGGCAAGAAAAACCTGTCAGATTGCCAGCATCTACTTCCACGTTAACTGAAGATGCTTCAAGTCTTACATCCAGACAACTCACCCAACTGCCCTCCAGACTCTAAGGAAGCCGGTTTATAGATTGTACCAAACATTAACCTTTGTTTTTCTTCTGTTTGAAAGCCCATCTGCGATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4023 FAR2::OVCH1 ENSG00000064763.12::ENSG00000187950.9 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAR2 ENSG00000064763.12 protein_coding + + chr12:29149016-29341121:+ chr12:29321924:+ chr12:29301949-29494054:+ chr12:29474857:+ OVCH1 ENSG00000187950.9 protein_coding - - chr12:29412474-29497686:- chr12:29423298:- chr12:29565407-29650619:- chr12:29576231:- chr12:29324244 chr12:29434333 NA NA chr12:29477177 chr12:29587266 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Male_sterility_protein(92%)| Epimerase(100%),NAD_binding_4(100%),Polysacc_synt_2(100%),Semialdhyde_dh(100%),Sterile(31%)| 2 1 2 190 3 ENST00000686419.1 ENST00000539117.5 downstream downstream none GCCAAATGCTAATTTTACCAGCAACAGCTTCACATCACAGTACTGGAATGCGGTCAGCCACCGGGCCCCTGCCATTATCTATGACTGCTATCTGCGGCTCA...CATGAATCGGCTTTTAAGAACTGTTTCCATGTTGGAGTATTTCATCAACCGGAGTTGGGAATGGAGCACGTACAATACAGAAATGCTGATGTCTGAGCTGAGTCCTGAAGACCAGAGA|CTCATTTACATGGCTCCAAGAAAGAGTTTATCTTGATATCCAGTGCTGCTTACCTGACTGTGCATTTTAAGACTGATGAGTCTGAGAGAAAGAGGTTTTAAGCTTATTTTAGAAGAGATGATTCAGGAGCAATCACAGAAGAGCAATATTGAG MNRLLRTVSMLEYFINRSWEWSTYNTEMLMSELSPEDQR|liymaprksls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4051 MED13L::RFLNA ENSG00000123066.9::ENSG00000178882.15 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 689 TRUE 248 MED13L ENSG00000123066.9 protein_coding - - chr12:115957905-116277693:- chr12:116096669:- chr12:116395710-116715498:- chr12:116534474:- RFLNA ENSG00000178882.15 protein_coding + + chr12:123973241-124316024:+ chr12:124149595:+ chr12:124457788-124800570:+ chr12:124634141:+ chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848 chr12:124053138,chr12:124053137,chr12:124053135,chr12:124053112,chr12:124053178,chr12:124053162,chr12:124053161,chr12:124053157,chr12:124053156,chr12:124053147 NA NA chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653 chr12:124537685,chr12:124537684,chr12:124537682,chr12:124537659,chr12:124537725,chr12:124537709,chr12:124537708,chr12:124537704,chr12:124537703,chr12:124537694 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Mediator_complex_subunit_13_N-terminal(69%)|FAM101_family(100%) Med13_N(70%)|FAM101(100%) 55 51 34 674 202 ENST00000281928.9 ENST00000389727.8 upstream upstream duplicates(8),mismappers(4),mismatches(3) TTTCATCCGCTGTCTGCAAGCTAACCTGCTTTGTGTATGGCGTCGTGATGTCAAACCAGATTGCAAAGAGTTATGGATATTCTGGTGGGGAGATGAACCCAACCTAGTGGGTGTAATACATCATGAACTGCAGG___TTGTGGAAGAAGGACTCTGGGAAAATGGCCTTTCCTATGAATGTAGGACGCTGCTCTTCAAAGCGATCCACAATCTGTTAGAAAG___GTGCCTAATGGATAAGAACTTCGTTAGGATTGGGAAATGGTTTGTCCGACCCTACGAAAAGGATGAAAAGCCAGTCAACAAAAG|GCCGCACTTGGTGAGAGTCTTCACGGACCACAGTGTTGCACGAGGTGATTGTGTTTGCAGAGGTTTTTTTGTCCTTGAAGAGCACTTAGGGCTGGAGAGCAAGACACATGCTGACGAGCAGAAGCTGACAGGCTTGCTGCCATGTGGGAAAGTCCTTGGACGAGTTGTCTGCTTGCGGAGAGGTGTCTGCGGCTCAG FIRCLQANLLCVWRRDVKPDCKELWIFWWGDEPNLVGVIHHELQVVEEGLWENGLSYECRTLLFKAIHNLLERCLMDKNFVRIGKWFVRPYEKDEKPVNKr|phlvrvftdhsvargdcvcrgffvleehlgleskthadeqkltgllpcgkvlgrvvclrrgvcgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-620 chr12:116148560-116148654:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4052 MED13L::RFLNA ENSG00000123066.9::ENSG00000178882.15 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 689 TRUE 248 MED13L ENSG00000123066.9 protein_coding - - chr12:115957905-116277693:- chr12:116277060:- chr12:116395710-116715498:- chr12:116714865:- RFLNA ENSG00000178882.15 protein_coding + + chr12:123973241-124316024:+ chr12:124149595:+ chr12:124457788-124800570:+ chr12:124634141:+ chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848 chr12:124053138,chr12:124053137,chr12:124053135,chr12:124053112,chr12:124053178,chr12:124053162,chr12:124053161,chr12:124053157,chr12:124053156,chr12:124053147 NA NA chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653 chr12:124537685,chr12:124537684,chr12:124537682,chr12:124537659,chr12:124537725,chr12:124537709,chr12:124537708,chr12:124537704,chr12:124537703,chr12:124537694 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none Mediator_complex_subunit_13_N-terminal(5%)|FAM101_family(100%) Med13_N(0%)|FAM101(100%) 1 0 0 474 202 ENST00000281928.9 ENST00000389727.8 upstream upstream none CCCCGCTCTGGCGGCCGGGCTCGCGGAGGATCATGACTGCGGCAGCGAACTGGGTGGCGAACGGGGCGAGCCTGGAGGATTGTCACTCCAACCTCTTTTCGCTG|GCCGCACTTGGTGAGAGTCTTCACGGACCACAGTGTTGCACGAGGT MTAAANWVANGASLEDCHSNLFSL|aalgeslhgpqcctr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4053 SASS6::LRRC7 ENSG00000156876.10::ENSG00000033122.21 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SASS6 ENSG00000156876.10 protein_coding - - chr1:100083563-100132955:- chr1:100132750:- chr1:100549119-100598511:- chr1:100598306:- LRRC7 ENSG00000033122.21 protein_coding + + chr1:69567922-70151945:+ chr1:70107752:+ chr1:70033605-70617628:+ chr1:70573435:+ chr1:100132690,chr1:100132698 chr1:70105951,chr1:70105942 NA NA chr1:100598246,chr1:100598254 chr1:70571634,chr1:70571625 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none |PDZ_domain(68%) |LRR_1(100%),LRR_8(5%),PDZ(43%),PDZ_6(100%) 54 43 32 182 92 ENST00000462159.1 ENST00000651989.2 upstream upstream duplicates(9),mismatches(3) CCCGCCTCCTCCGCAGAAGCCGAGCGCCAAACTCAAACTTTATCAGGACCCGGACCTCTCAGGCTAATCCCGAGGGCCGGGCCTGTTGGGCTTTTCTGCACACCAGCCGAGGCAGCGAGCCAACATGAGCCAAGTGCTGTTCCACCAACTAGTCCCGTTGCAGGTGAAATGCAAAGACTGTGAGGAGAG|GGTATCTTTGTTACTAGGGTTCAGCCTGATGGGCCAGCATCAAACCTACTGCAGCCTGGTGATAAGATCCTTCAG___GCAAATGGACACAGTTTTGTACATATGGAACATGAAAAAGCTGTATTACTACTGAAGAGTTTCCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4060 MED13L::ENSG00000274874 ENSG00000123066.9::ENSG00000274874.2 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MED13L ENSG00000123066.9 protein_coding - - chr12:115957905-116277693:- chr12:116096669:- chr12:116395710-116715498:- chr12:116534474:- ENSG00000274874 ENSG00000274874.2 lncRNA + + chr12:123973215-124088594:+ chr12:124088264:+ chr12:124457762-124573140:+ chr12:124572811:+ chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848 chr12:124053138,chr12:124053137,chr12:124053135,chr12:124053112,chr12:124053178,chr12:124053162,chr12:124053161,chr12:124053157,chr12:124053156,chr12:124053147 NA NA chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653 chr12:124537685,chr12:124537684,chr12:124537682,chr12:124537659,chr12:124537725,chr12:124537709,chr12:124537708,chr12:124537704,chr12:124537703,chr12:124537694 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Mediator_complex_subunit_13_N-terminal(69%)| Med13_N(70%)| 20 16 22 674 62 ENST00000281928.9 ENST00000618862.2 upstream upstream duplicates(7),mismatches(3) CCCAACCTAGTGGGTGTAATACATCATGAACTGCAGG___TTGTGGAAGAAGGACTCTGGGAAAATGGCCTTTCCTATGAATGTAGGACGCTGCTCTTCAAAGCGATCCACAATCTGTTAGAAAG___GTGCCTAATGGATAAGAACTTCGTTAGGATTGGGAAATGGTTTGTCCGACCCTACGAAAAGGATGAAAAGCCAGTCAACAAAAG|ATCGGTGTTGCTGGAAGTCGGTCCAGGAGCTTTTTGGATAATCCACCTCATGACTGGAAAACAACGAAGAAACCCAGTAGCTTCTTCGCCGTGTGGATTCAGACCCCGGGAGCCCAGGCCTGCACCTGGGCAGCTGCTCCCTGCACGTGGCCGGACATATGGAATATGGAGCCCCGCTGCCTTGGAGTCAGAGAGCTG PNLVGVIHHELQVVEEGLWENGLSYECRTLLFKAIHNLLERCLMDKNFVRIGKWFVRPYEKDEKPVNKr|svllevgpgafwiihlmtgkqrrnpvasspcgfrpreprpapgqllpargrtygiwspaaleses NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-620 chr12:116148560-116148654:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4062 DBT::SRSF11 ENSG00000137992.15::ENSG00000116754.14 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DBT ENSG00000137992.15 protein_coding - - chr1:100186919-100249834:- chr1:100235436:- chr1:100652475-100715390:- chr1:100700992:- SRSF11 ENSG00000116754.14 protein_coding + - chr1:70205682-70253052:+ chr1:70223967:- chr1:70671365-70718735:+ chr1:70689650:- chr1:100231187,chr1:100231194,chr1:100231198 chr1:70228159,chr1:70228163,chr1:70228163 NA NA chr1:100696743,chr1:100696750,chr1:100696754 chr1:70693842,chr1:70693846,chr1:70693846 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Biotin-requiring_enzyme(25%)| Biotin_lipoyl(1%)| 20 6 12 180 45 ENST00000370132.8 unknown upstream downstream duplicates(1),mismatches(1) GGAGCAGGAATGCGGGGAAGCTG___ATTTGTGTTCGCTATTTTCAAACATGTGGTAATGTTCATGTTTTGAAGCCAAATTATGTGTGTTTCTTTGGTTATCCTTCATTCAAGTATAGTCATCCACATCACTTCCTGAAAACAACTGCTG___CTCTCCGTGGACAGGTTGTTCAGTTCAAGCTCTCAGACATTGGAGAAGGGATTAGAGAAGTAACTGTTAAAGAATG|TGGGCTGAATCCATGGATGTGGAACCCAGAGATGAAGAAGGCCAACTGTGTAGATAATAGTTACAATCAGGTGACCTGTTCACAACAGATAGAATTTTATGTAATCTGAGC SRNAGKLICVRYFQTCGNVHVLKPNYVCFFGYPSFKYSHPHHFLKTTAALRGQVVQFKLSDIGEGIREVTVKEc|glnpwmwnpemkkancvdnsynqvtcsqqiefyvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4063 CREBBP::DNASE1 ENSG00000005339.15::ENSG00000213918.11 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- DNASE1 ENSG00000213918.11 protein_coding + - chr16:3611728-3680143:+ chr16:3627933:- chr16:3661729-3730144:+ chr16:3677934:- chr16:3828444,chr16:3828448 chr16:3636689,chr16:3636690 NA NA chr16:3878445,chr16:3878449 chr16:3686690,chr16:3686691 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 12 11 14 136 44 ENST00000262367.10 unknown upstream downstream duplicates(2),mismappers(1),mismatches(4) CCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|AAATAGAAAATACATGCTGAAATTCATATGGAATCTCCACGGACCCCAGATAGCCAACACCATGTTGAAAAAGAAAAACAGATTCAGGATTCACACTTCCTGATTTCAAAACTTACTAACAAACTGCAGTAATCACAACAATGTGGTACTGGCAGGAAGACAGACATACAGACTATTGGAATAGAGTTGACAGCCCAGAAATAAATCCTGGCATATATGGTCAAATGATTTTGACAAGGATGCCA PGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 4064 MCM9::SMIM8 ENSG00000111877.18::ENSG00000111850.11 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCM9 ENSG00000111877.18 protein_coding - - chr6:118813442-118935162:- chr6:118911650:- chr6:119134605-119256327:- chr6:119232815:- SMIM8 ENSG00000111850.11 protein_coding + - chr6:87322583-87399749:+ chr6:87344605:- chr6:88032301-88109467:+ chr6:88054323:- chr6:118908607,chr6:118908610 chr6:87353655,chr6:87353655 NA NA chr6:119229772,chr6:119229775 chr6:88063373,chr6:88063373 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none MCM_OB_domain(100%),MCM_P-loop_domain(38%)| AAA_5(0%),MCM(2%),MCM_OB(100%)| 13 9 6 57 25 ENST00000316316.10 unknown upstream downstream duplicates(2),mismatches(2) GCTGTGGCCATGGTGCTGGCTGGTGGGATTCAAAGGACTGATGCTACAGGAACACGGGTCAGAG___GAGAATCTCATCTTTTATTGGTTGGGGATCCTGGCACAGGGAAATCTCAGTTCCTCAAATATGCAGCAAAGATTACACCAAGATCTGTGCTGACCACAGGAATTGGATCTACTAGTGCAG|TTTATGGAGGCTGAGAAGTCCAAGGTGGAGGAGTTGCATCAG___GTTTAATGAAGAGCTCTGGATTCACAGCACGAAATAAGGTTGTTGTGCGCACCCCTCTGAGCCCTGGGCTTTGAAACTCTTTCTCTTTGGGTGGTTCCTTTTTGAATGTTGGAGGCTCAGGTGCTGAAGACATCTTGATCAATGATGAT AVAMVLAGGIQRTDATGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTTGIGSTSA|vygg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4065 SRSF11::ENSG00000285530 ENSG00000116754.14::ENSG00000285530.1 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 690 TRUE 249 SRSF11 ENSG00000116754.14 protein_coding + + chr1:70205682-70253052:+ chr1:70221839:+ chr1:70671365-70718735:+ chr1:70687522:+ ENSG00000285530 ENSG00000285530.1 lncRNA + + chr1:100220488-100253414:+ chr1:100249464:+ chr1:100686044-100718970:+ chr1:100715020:+ chr1:70228163,chr1:70228163,chr1:70228159 chr1:100231194,chr1:100231198,chr1:100231187 NA NA chr1:70693846,chr1:70693846,chr1:70693842 chr1:100696750,chr1:100696754,chr1:100696743 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(47%)| RRM_1(1%)| 9 13 2 940 26 ENST00000370950.7 ENST00000648283.1 downstream upstream mismatches(1) ATCCAGGTGACTAATGTCTCCCCGAGCGCTAGCTCTGAGCAGATGCGGACTCTCTTCGGTTTCCTAGGCAAGATCGACGAACTGCGCCTCTTCCCGCCGGA|CGCCTATCACAATGCCTGGGCACCTGGAAGGCGCTCAATAAAACGCTAGCTGGGCCTCGGGGTACAGATGGAGCAGGACGGCTGAGTCGCTGCAGAAGCGCTTCCAGGT...___GTTCTCAGCATACGGACTGCAGCCATCTTACCCCGGAAATGACAACAGTGCCGCAAACTGGAGAGACTCTCCTCGGCGCGGCCTATCAGGAGATGGGAAACGCaCCTCCCCCTGGGCGACCAATAGGGAGGGAAGAAACGAGC IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPd|ayhnawapgrrsikr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4067 SRSF11::ENSG00000285530 ENSG00000116754.14::ENSG00000285530.1 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 690 TRUE 249 SRSF11 ENSG00000116754.14 protein_coding + + chr1:70205682-70253052:+ chr1:70205780:+ chr1:70671365-70718735:+ chr1:70671463:+ ENSG00000285530 ENSG00000285530.1 lncRNA + + chr1:100220488-100253414:+ chr1:100249464:+ chr1:100686044-100718970:+ chr1:100715020:+ chr1:70228163,chr1:70228163,chr1:70228159 chr1:100231194,chr1:100231198,chr1:100231187 NA NA chr1:70693846,chr1:70693846,chr1:70693842 chr1:100696750,chr1:100696754,chr1:100696743 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 132 26 ENST00000370950.7 ENST00000648283.1 downstream upstream none CTAGCGTCCTGGAATTACTTCAATCAA|CGCCTATCACAATGCCTGGGCACCTGGAAGGCGCTCAATAAAACGCTAGCTGGGCCTCGGGGTACAGATGGAGC...CAGCCATCTTACCCCGGAAATGACAACAGTGCCGCAAACTGGAGAGACTCTCCTCGGCGCGGCCTATCAGGAGATGGGAAACGCaCCTCCCCCTGGGCGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4069 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943837:+ chr21:46359940-46396888:+ chr21:46363752:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 8 4 3 224 224 ENST00000291634.11 ENST00000348831.9 downstream upstream duplicates(1) GGCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGAGAG|AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTACTTCAGTCCTG...ATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGGATCAGAGCAGACATAAAGCTAGAAAAATTTCAAG___ACAGAAACAGTCTCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAACATGA AFINTNIFARTKIDPSALVQKLELDVRSVTSVRRGEAGSSARSVPSIRR|ewslsgwhgelkgqlkethwpsaefcllqs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4070 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943837:+ chr21:46359940-46396888:+ chr21:46363752:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45118564:+ chr21:46493768-46646475:+ chr21:46538479:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 0 3 3 224 58 ENST00000291634.11 ENST00000449478.2 downstream upstream none GCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGAGAG|AGTCTAGTGTTGtTAATGAGAAGTTGGATATCCGTTTGATCCTTGTTCTACTGCAG___GTAGT...___AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGG AFINTNIFARTKIDPSALVQKLELDVRSVTSVRRGEAGSSARSVPSIRR|essvvnekldirlilvllqv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4071 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943792:+ chr21:46359940-46396888:+ chr21:46363707:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 0 2 2 271 224 ENST00000397826.8 ENST00000348831.9 downstream upstream duplicates(1) GCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAG|AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACA...ATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGGATCAGAGCAGACATAAAGCTAGAAAAATTTCAAG___ACAGAAACAGTCTCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAACATGAGTA AFINTNIFARTKIDPSALVQKLELDVRSVTSVRR|ewslsgwhgelkgqlket NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4072 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943837:+ chr21:46359940-46396888:+ chr21:46363752:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45171610:+ chr21:46493768-46646475:+ chr21:46591525:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 2 0 1 224 212 ENST00000291634.11 ENST00000705393.1 downstream upstream none GCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAG___GACTGGGCGTTCATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTCCATCAGGAGAG|ACAGAAACAGTCTCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAACATGA___GTTCCAGCAGCACTGATGTGAAGGAAAACCGCAATCTG ATPPPASAAGKDWAFINTNIFARTKIDPSALVQKLELDVRSVTSVRRGEAGSSARSVPSIRR|dRNSLRQSRNPQKYFAMDIEDEENMSSSSTDVKENRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4073 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44940186:+ chr21:46359940-46396888:+ chr21:46360101:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 0 1 1 144 224 ENST00000291634.11 ENST00000348831.9 downstream upstream none CGCCCGAGTGCACCAGGCTGCCGTGAGGCCGAAAGGGGAGGCCGCCCCCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAG|AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCA...ATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGGATCAGAGCAGACATAAAGCTAGAAAAATTTCAAG___ACAGAAACAGTCTCCGCCAGTCAAG ARVHQAAVRPKGEAAPGPAPPAPEATPPPASAAGK|sgafqagmeslrgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4074 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 691 TRUE 250 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943792:+ chr21:46359940-46396888:+ chr21:46363707:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45171610:+ chr21:46493768-46646475:+ chr21:46591525:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 1 0 0 271 212 ENST00000397826.8 ENST00000705393.1 downstream upstream none GCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAG|ACAGAAACAGTCTCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAAGAAAAC ARTKIDPSALVQKLELDVRSVTSVRR|dRNSLRQSRNPQKYFAMDIEDEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4075 BAIAP2::CHMP6 ENSG00000175866.16::ENSG00000176108.9 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 358 FALSE NA FALSE NA BAIAP2 ENSG00000175866.16 protein_coding + + chr17:81035122-81117434:+ chr17:81057967:+ chr17:79008922-79091234:+ chr17:79031767:+ CHMP6 ENSG00000176108.9 protein_coding + + chr17:80991598-81009517:+ chr17:80997261:+ chr17:78965398-78983317:+ chr17:78971061:+ chr17:81082431,chr17:81082428 chr17:80991446,chr17:80991440 NA NA chr17:79056231,chr17:79056228 chr17:78965246,chr17:78965240 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none IRSp53/MIM_homology_domain(25%)|Snf7(24%) IMD(30%)|Snf7(17%) 2 6 2 456 424 ENST00000428708.7 ENST00000325167.9 downstream upstream none TCGCCATGGGGAAGAATTACGAGAAGGCACTGGCAG___GTGTGACGTATGCAGCCAAAGGCTACTTTGACGCCCTGGTGAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCG|CAAATAGACGAGCTCCTGGCAGGAAGCTTCACTCAGGAGGATGAAGACGCCATCCTGGAGGAGCTGAGCGCAATCACTCAG___GAACAAATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAAGATCCCAG___AAAACGTCCCTGTCAAGGCCAGGCCCAGGCAGG AMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKEL|anrrapgrklhsgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4076 EDA::NHSL2 ENSG00000158813.18::ENSG00000204131.11 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EDA ENSG00000158813.18 protein_coding + + chrX:69616067-70039472:+ chrX:69616704:+ chrX:68835911-69259322:+ chrX:68836548:+ NHSL2 ENSG00000204131.11 protein_coding + + chrX:71910845-72161750:+ chrX:72138441:+ chrX:71130695-71381600:+ chrX:71358291:+ chrX:69877303,chrX:69877382,chrX:69877377 chrX:72027896,chrX:72027896,chrX:72027888 NA NA chrX:69097139,chrX:69097218,chrX:69097213 chrX:71247746,chrX:71247746,chrX:71247738 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |NHS-like(100%) |NHS(100%) 1 2 1 4 23 ENST00000374553.6 ENST00000633930.2 downstream upstream duplicates(1) GCAGCCGTCACCTAAGCAGCAGCCATTGGAACCGGGAGAAGCCGCACTCCACTCTGACTCCCAGGACGGGCACCAG|GTCACAGCAACAGCCCAGCAGGCAGTGTGGCCCACTCTACCACCTCCGACATCAGGCCCAGTCACTCAGTTCCAGAAGGGGTTCATGGAAGAGTTGCAGTTGGTCAGGATGCTCGGTTCCCAAGTCTCACCTCGCCAGTACTGAGAACTCCTTCCAGTGAGCCGGAC QPSPKQQPLEPGEAALHSDSQDGHQ|vtataqqavwptlppptsgpvtqfqkgfmeelqlvrmlgsqvsprqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4078 FAM219A::ALDH1A1 ENSG00000164970.15::ENSG00000165092.13 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 692 TRUE 251 FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34458237:- chr9:34398182-34458568:- chr9:34458235:- ALDH1A1 ENSG00000165092.13 protein_coding - - chr9:72900671-73080442:- chr9:72953014:- chr9:75515587-75695358:- chr9:75567930:- chr9:34441568,chr9:34441570 chr9:72960666,chr9:72960665 NA NA chr9:34441566,chr9:34441568 chr9:75575582,chr9:75575581 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Aldehyde_dehydrogenase_family(100%) |Aldedh(100%),LuxC(100%) 1 2 0 14 31 ENST00000379080.5 ENST00000419959.5 upstream downstream none TCCGCGGCCGCGCCCGGCCCCTGGCCCGCTCGCCCGCCGGCACCATGATGGAGGAGATCGACCGGTTCCAG|GAGCCGAATCAGAAATGTCATCCTCAGGCACGCCAGACTTACCTGTCCTACTCACCGATTTGAAGATTCAATATACTAAG___ATCTTCATAAACAATGAATGGCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCTT MEEIDRFQ|epnqkchpqarqtylsyspi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4079 FAM219A::ALDH1A1 ENSG00000164970.15::ENSG00000165092.13 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 692 TRUE 251 FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34458204:- chr9:34398182-34458568:- chr9:34458202:- ALDH1A1 ENSG00000165092.13 protein_coding - - chr9:72900671-73080442:- chr9:72953014:- chr9:75515587-75695358:- chr9:75567930:- chr9:34441568,chr9:34441570 chr9:72960666,chr9:72960665 NA NA chr9:34441566,chr9:34441568 chr9:75575582,chr9:75575581 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none |Aldehyde_dehydrogenase_family(100%) |Aldedh(100%),LuxC(100%) 0 3 0 73 31 ENST00000651358.1 ENST00000419959.5 upstream downstream none CGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTG|GAGCCGAATCAGAAATGTCATCCTCAGGCACGCCAGACTTACCTGTCCTACTCACCGATTTGAAGATTCAATATACTAAG___ATCTTCATAAACAATGAATGGCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCTTTAATCCTGCAACTGAGGAGGAGCTCTGCCAGGTAGAAGAAGGAGATAAGG DRFQVPTAHSEMQPL|epnqkchpqarqtylsyspi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4080 FAM219A::ALDH1A1 ENSG00000164970.15::ENSG00000165092.13 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 692 TRUE 251 FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34458204:- chr9:34398182-34458568:- chr9:34458202:- ALDH1A1 ENSG00000165092.13 protein_coding - - chr9:72900671-73080442:- chr9:72940252:- chr9:75515587-75695358:- chr9:75555168:- chr9:34441568,chr9:34441570 chr9:72960666,chr9:72960665 NA NA chr9:34441566,chr9:34441568 chr9:75575582,chr9:75575581 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Aldehyde_dehydrogenase_family(100%) |Aldedh(100%),LuxC(100%) 0 1 0 73 39 ENST00000651358.1 ENST00000419959.5 upstream downstream mismatches(1) CGCGCCCGGCCCCTGGCCCGCTCGCCCGCCGGCACCATGATGGAGGAGATCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTG|ATCTTCATAAACAATGAATGGCATGATTCAGTGAGTGGCAAGAAATTTCCTGTCTTTAATCCTGCAACTGAGGAGGAGCTCTGCCAGGTAGAAGAAGGAGAT MMEEIDRFQVPTAHSEMQPL|IFINNEWHDSVSGKKFPVFNPATEEELCQVEEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4137 CCDC90B::DLG2 ENSG00000137500.10::ENSG00000150672.19 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 698 TRUE 252 CCDC90B ENSG00000137500.10 protein_coding - - chr11:83259081-83286390:- chr11:83278726:- chr11:82970123-82997433:- chr11:82989769:- DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83486251:- chr11:83166055-85339379:- chr11:83197294:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Coiled-coil_domain-containing_protein_90-like(23%)|Guanylate_kinase(100%) DUF1640(7%)|Guanylate_kin(100%) 0 1 0 179 1 ENST00000529689.6 ENST00000530800.5 upstream downstream none CGTTAACTGCTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCAACAG|TTACTGGAGTTTAAATATGCTTGAAATGTAAAAGTGGCATGAAACTGGAGTGATGCAAGAATATTTAGTATTCTTTTAAGGACTATCATTTTTAACTAGGAAAATTTGGGGGCAGTTCTCAACCTTGTTTTTG LTALSNVSLDTIYKEMVTQAQQ|LLEFKYA* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4138 CCDC90B::DLG2 ENSG00000137500.10::ENSG00000150672.19 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 698 TRUE 252 CCDC90B ENSG00000137500.10 protein_coding - - chr11:83259081-83286390:- chr11:83278726:- chr11:82970123-82997433:- chr11:82989769:- DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83484228:- chr11:83166055-85339379:- chr11:83195271:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Coiled-coil_domain-containing_protein_90-like(23%)|Guanylate_kinase(100%) DUF1640(7%)|Guanylate_kin(100%) 1 0 0 179 2 ENST00000529689.6 ENST00000376104.7 upstream downstream none GCCAGTGGATATAACTCCTTTAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTGGAAACTCATG___GATTTGACAAAACACAAGCAG...AAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCAACAG|TCATTCAATGACAAGCGTAAAAAGAGCTTCATCTTTTCACGAAAATTCC NVSLDTIYKEMVTQAQQ|SFNDKRKKSFIFSRKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4139 CCDC90B::DLG2 ENSG00000137500.10::ENSG00000150672.19 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 698 TRUE 252 CCDC90B ENSG00000137500.10 protein_coding - - chr11:83259081-83286390:- chr11:83278726:- chr11:82970123-82997433:- chr11:82989769:- DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83472777:- chr11:83166055-85339379:- chr11:83183820:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Coiled-coil_domain-containing_protein_90-like(23%)|Guanylate_kinase(100%) DUF1640(7%)|Guanylate_kin(100%) 1 0 0 179 2 ENST00000529689.6 ENST00000706233.1 upstream downstream none TTGGAAACTCATG___GATTTGACAAAACACAAGCAGAAACAATTGTATCAGCGTTAACTGCTTTATCAAATGTCAGCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCAACAG|GAGGACAAGAAGACCTCATTCTTTCCTATGAGCCTGTTACAAGGCAG LETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQ|edkktsffpmsllqg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4140 CCDC90B::DLG2 ENSG00000137500.10::ENSG00000150672.19 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 698 TRUE 252 CCDC90B ENSG00000137500.10 protein_coding - - chr11:83259081-83286390:- chr11:83278726:- chr11:82970123-82997433:- chr11:82989769:- DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83471727:- chr11:83166055-85339379:- chr11:83182770:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Coiled-coil_domain-containing_protein_90-like(23%)|Guanylate_kinase(100%) DUF1640(7%)|Guanylate_kin(100%) 0 1 0 179 4 ENST00000529689.6 ENST00000706233.1 upstream downstream none AAAGAGATGGTCACTCAAGCTCAACAG|TAAACTACACCCGGCCGGTGATTATCCTGGGGCCCATGAAGGATCGGATCAATGACGACTTGATATCTGAATTCCCTGATAAATTTGGCTCCTGTGTG KEMVTQAQQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4152 GPHN::PALS1 ENSG00000171723.16::ENSG00000072415.10 LS180 SRR8615398 SRR8652101 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 361 TRUE 701 TRUE 253 GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:66681185:+ chr14:66974125-67648520:+ chr14:67147903:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67312527:+ chr14:67707430-67802778:+ chr14:67779244:+ chr14:66717991,chr14:66717991 chr14:67304202,chr14:67304199 NA NA chr14:67184709,chr14:67184709 chr14:67770919,chr14:67770916 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Probable_molybdopterin_binding_domain(10%)|Guanylate_kinase(100%),Variant_SH3_domain(100%) MoCF_biosynth(38%)|Guanylate_kin(100%),SH3_1(100%),SH3_2(100%) 7 18 25 217 108 ENST00000315266.9 ENST00000677382.1 downstream upstream duplicates(2),mismappers(3),mismatches(1) ATGGCGACCGAGGGAATGATCCTTACTAACCACGACCATCAAATCCGTGTCGGAGTCCTTACAG___TGAGTGATAGTTGCTTCAGGAATCTTGCAGAAGACCGCAGTGGGATAAATCTCAAAGATCTCGTACAAGATCCTTCTTT|ATCCATGTAAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCATGTCGAGAGTTAGGTCTGTCTTTTCAAAAAGGTGATATACTTCATGTGATCAGTCAAGAAGATCCAAACTGGTGGCAGGCCTACAGGGAAGGGGACGAAGATAATCAACCTCTAGCCGGGCTTGTTCCAG___GGAAAAGCTTTCAGCAGCAAAGGGAAGCCATGAAACAAACCATAGAAGAAGATAAGGAGCCAGAAAAATCAG___GAAAACTG MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSl|sm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4153 GPHN::PALS1 ENSG00000171723.16::ENSG00000072415.10 LS180 SRR8615398 SRR8652101 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 701 TRUE 253 GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:66508591:+ chr14:66974125-67648520:+ chr14:66975309:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67312527:+ chr14:67707430-67802778:+ chr14:67779244:+ chr14:66717991,chr14:66717991 chr14:67304202,chr14:67304199 NA NA chr14:67184709,chr14:67184709 chr14:67770919,chr14:67770916 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Probable_molybdopterin_binding_domain(1%)|Guanylate_kinase(100%),Variant_SH3_domain(100%) MoCF_biosynth(0%)|Guanylate_kin(100%),SH3_1(100%),SH3_2(100%) 1 0 12 211 108 ENST00000315266.9 ENST00000677382.1 downstream upstream mismatches(1) CTCCTTCTTGCCGGACTTGGGGCCGCGCGCCCTGACTCCTTCCCCTCCCGCGGACCCGCGCACTCCCGGCGCGGCCTCTCCCCCACGCAGGCCACCGTGCA...CTCTGGCTCCCTAGCTGTCGCGCTCTCCTCGGCGAGCGCGCTCCCGGCCCGCGCGCTCCGGGCTCCGGTTTCTCCCGGCTCCTGTCAGTGCGGTGACTGCGCTGGGAAACATGGCGACCGAGGGAATGATCCTTACTAACCACGACCATCAAATCCGTGTCGGAGTCCTTACAG|ATCCATGTAAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCATGTCGAGAGTTAGGTCTGTCTTTTCAAAAAGGTGATATACTTCATGTGATCAGTCAAGAAGATCCAAACTGGTGGCAGGCCTACAGGGAAGGGGACGAAGATAATCAACCTCTAGCCGGGCTTGTTCCAG___GGAAAAGCT MATEGMILTNHDHQIRVGVLT|dpckssf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4174 SLC7A6::TANGO6 ENSG00000103064.15::ENSG00000103047.8 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 364 TRUE 704 TRUE 254 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68900434:+ chr16:68877434-69119085:+ chr16:68934337:+ chr16:68268414,chr16:68268413,chr16:68268414 chr16:68897018,chr16:68897014,chr16:68897016 NA NA chr16:68302317,chr16:68302316,chr16:68302317 chr16:68930921,chr16:68930917,chr16:68930919 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%),Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_2(100%) |RTP1_C1(100%),RTP1_C2(100%) 57 253 286 526 745 ENST00000618043.4 ENST00000261778.2 downstream upstream duplicates(154),low_entropy(5),mismatches(15) GCGGCGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|GTGTACGTGGTTGGGAATGAACCTTTAACAGTTTTGATGGATTCCCTGCTTCCAGTCCTGGGAGTGCTTTTTCTTCTCTACTGTTTTACTAAGCAGAGTGTGTCTCACATAAG___GTCACTTTGCCAAGAAATCTTATTATGGATTCTGGGGAAGCTGGAAAGGAAGAAGGCAATTGCCAGCCTGAAAGGATTTGCAGGGTTGGACAAAGCTGTGCCCTCTCTCCATTCTCTGTGTCAGTTTAGAGTTGCCACTCAAGGTGGCATTATGATTACCATCAAAGAGGCCATTAG___TGATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTATCCTCTGAGCAGGGCCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4175 SLC7A6::TANGO6 ENSG00000103064.15::ENSG00000103047.8 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 704 TRUE 254 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68907443:+ chr16:68877434-69119085:+ chr16:68941346:+ chr16:68268414,chr16:68268413,chr16:68268414 chr16:68897018,chr16:68897014,chr16:68897016 NA NA chr16:68302317,chr16:68302316,chr16:68302317 chr16:68930921,chr16:68930917,chr16:68930919 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%),Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_2(100%) |RTP1_C1(100%),RTP1_C2(100%) 0 1 26 526 702 ENST00000618043.4 ENST00000261778.2 downstream upstream duplicates(3),mismatches(3) CGACCGAGCATCCTGGCGGCGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|TGATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTATCCTCTGAGCAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTGCCAGGAATGCGGTTTGGCAGGAGACTTCTTCATCTTCTGTTTGAAA___GAGTTGACTCATGTGGCCTCGGAAAATGAAACAGAGTTAAAAACTGAGCCCTTCTCCAGCAAGAGCCTCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4176 SLC7A6::TANGO6 ENSG00000103064.15::ENSG00000103047.8 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 704 TRUE 254 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68264576:+ chr16:68298419-68335726:+ chr16:68298479:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68900434:+ chr16:68877434-69119085:+ chr16:68934337:+ chr16:68268414,chr16:68268413,chr16:68268414 chr16:68897018,chr16:68897014,chr16:68897016 NA NA chr16:68302317,chr16:68302316,chr16:68302317 chr16:68930921,chr16:68930917,chr16:68930919 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%),Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_2(100%) |RTP1_C1(100%),RTP1_C2(100%) 0 7 0 183 745 ENST00000618043.4 ENST00000261778.2 downstream upstream duplicates(1) CGGCGCGACCGAGCATCCTGGCGGCGCCGGGCCACTGGGAG|GTGTACGTGGTTGGGAATGAACCTTTAACAGTTTTGATGGATTCCCTGCTTCCAGTCCTGGGAGTGCTTTTTCTTCTCTACTGTTTTACTAAGCAGAGTGTGTCTCACATAAG___GTCACTTTGCCAAGAAATCTTATTATGGATTCTGGGGAAGCTGGAAAGGAAGAAGGCAATTGCCAGCCTGAAAGGATTTGCAGGGTTGGACAAAGCTGTGCCCTCTCTCCATTCTCTGTGTCAGTTTAGAGTTGCCACTCAAGGTGGCATTATGATTACCATCAAAGAGGCCATTAG___TGATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTATCCTCTGAGCAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTGCCAGGAATGCGGTTTGGCAGGAGACTTCTTCATCTTCTGTTTGAAA___GAGTTGACTCATGTGGCCcCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4177 SLC7A6::TANGO6 ENSG00000103064.15::ENSG00000103047.8 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 704 TRUE 254 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68264576:+ chr16:68298419-68335726:+ chr16:68298479:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68902328:+ chr16:68877434-69119085:+ chr16:68936231:+ chr16:68268414,chr16:68268413,chr16:68268414 chr16:68897018,chr16:68897014,chr16:68897016 NA NA chr16:68302317,chr16:68302316,chr16:68302317 chr16:68930921,chr16:68930917,chr16:68930919 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%),Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_2(100%) |RTP1_C1(100%),RTP1_C2(100%) 0 1 0 183 760 ENST00000618043.4 ENST00000261778.2 downstream upstream none CCGAGCATCCTGGCGGCGCCGGGCCACTGGGAG|GTCACTTTGCCAAGAAATCTTATTATGGATTCTGGGGAAGCTGGAAAGGAAGAAGGCAATTGCCAGCC...AGTGATGAAGATGAAGATGAAGCCCTGTACCAGAAGGTATCCTCTGAGCAGGGCCGGGTGGAGCATCTCGGGGACTTGCTGTCCCACTGCCAGGAATGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4178 TMEM87B::MERTK ENSG00000153214.11::ENSG00000153208.19 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 365 TRUE 705 TRUE 255 TMEM87B ENSG00000153214.11 protein_coding + + chr2:112055269-112119318:+ chr2:112086104:+ chr2:112812846-112876895:+ chr2:112843681:+ MERTK ENSG00000153208.19 protein_coding + + chr2:111898607-112029561:+ chr2:111965191:+ chr2:112656184-112787138:+ chr2:112722768:+ chr2:112086841,chr2:112086838 chr2:111963941,chr2:111963935 NA NA chr2:112844418,chr2:112844415 chr2:112721518,chr2:112721512 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Lung_seven_transmembrane_receptor(49%)|Fibronectin_type_III_domain(100%),Immunoglobulin_domain(9%),Protein_kinase_domain(100%) Lung_7-TM_R(22%)|Ig_2(0%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),fn3(100%) 49 61 77 1005 204 ENST00000283206.9 ENST00000295408.9 downstream upstream duplicates(36),mismatches(12) ACAAAAAGATGGGTTTCATATCTTTATTGTTTCTATTAAAACGGAGAATACAGATGCAAGCTGGAATTTGAATG___TTTCTCTTTCTATGATTGGGCCTCATGGATATATCTCTGCATCAGATTGGCCCCTAATGATT___...TGGACTGTCAA___CCCAAGGCTTATTGATATTTGCGGAGTTGATTTCTGCGATTAAGAGGACGTTGGCTCGCCTTCTCGTGATCATTGTGAGCCTGGGCTATGGCATTGTGAA|GCCTGACGGAGATGGCGGTCTTCAGTTGTGAGGCCCACAATGACAAAGGGCTGACCGTGTCCAAGGGAGTGCAGATCAACATCAAAG___CAATTCCCTCCCCACCAACTGAAGTCAGCATCCGTAACAGCACTGCACACAGCATTCTGATCTCCTGGGTTCCTGGTTTTGATGGATACTCCCCGTTCAGGAATTGCAGCATTCAG___GTCAAGGAAGCTGATCCGCTGAGTAATGGCTCAGTCATGATTTT GLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVk|pdgdgglql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase Mer TK Axl Q12866 TRUE Lung,Adrenal,Stomach,Breast,Ovary,Uterus_cervix,Bladder exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Adrenocortical carcinoma,Bladder Urothelial Carcinoma LUNG,LUNG,BREAST,BREAST,CERVIX,ADRENAL_GLAND,BLADDER no_match 112813333,112813333,112813333,112813333,112813333,112817614,112834859|112824644 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE 112751828,112751828,112751828,112785928,112751828,112785928,112765960|112765960 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE YES,YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4179 TMEM87B::MERTK ENSG00000153214.11::ENSG00000153208.19 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 705 TRUE 255 TMEM87B ENSG00000153214.11 protein_coding + + chr2:112055269-112119318:+ chr2:112081118:+ chr2:112812846-112876895:+ chr2:112838695:+ MERTK ENSG00000153208.19 protein_coding + + chr2:111898607-112029561:+ chr2:111965191:+ chr2:112656184-112787138:+ chr2:112722768:+ chr2:112086841,chr2:112086838 chr2:111963941,chr2:111963935 NA NA chr2:112844418,chr2:112844415 chr2:112721518,chr2:112721512 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Lung_seven_transmembrane_receptor(15%)|Fibronectin_type_III_domain(100%),Immunoglobulin_domain(9%),Protein_kinase_domain(100%) Lung_7-TM_R(10%)|Ig_2(0%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),fn3(100%) 0 1 19 1024 204 ENST00000283206.9 ENST00000295408.9 downstream upstream duplicates(1),mismatches(2) CCAGAACACAAAAAGATGGGTTTCATATCTTTATTGTTTCTATTAAAACGGAGAATACAGATGCAAGCTGGAATTTGAATG___TTTCTCTTTCTATGATTGGGCCTCATGGATATATCTCTGCATCAGATTGGCCCCTAATGATT|GCCTGACGGAGATGGCGGTCTTCAGTTGTGAGGCCCACAATGACAAAGGGCTGACCGTGTCCAAGGGAGTGCAGATCAACATCAAAG___CAATTCCCTCCCCACCAACTGAAGTCAGCATCCGTAACAGCACTGCACACAGCATTCTGATCTCCTGGGTTCCTG RTQKDGFHIFIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMI|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase Mer TK Axl Q12866 TRUE Lung,Adrenal,Stomach,Breast,Ovary,Uterus_cervix,Bladder exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Adrenocortical carcinoma,Bladder Urothelial Carcinoma LUNG,LUNG,BREAST,BREAST,CERVIX,ADRENAL_GLAND,BLADDER no_match 112813333,112813333,112813333,112813333,112813333,112817614,112834859|112824644 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE 112751828,112751828,112751828,112785928,112751828,112785928,112765960|112765960 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE YES,YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4180 FGD6::NR2C1 ENSG00000180263.14::ENSG00000120798.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 706 TRUE 256 FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113651:- chr12:95470525-95611258:- chr12:95507427:- NR2C1 ENSG00000120798.17 protein_coding - - chr12:95020229-95073628:- chr12:95031488:- chr12:95414005-95467404:- chr12:95425264:- chr12:95110362,chr12:95110372 chr12:95039349,chr12:95039356 NA NA chr12:95504138,chr12:95504148 chr12:95433125,chr12:95433132 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none RhoGEF_domain(92%)|Ligand-binding_domain_of_nuclear_hormone_receptor(80%) RhoGEF(88%)|Hormone_recep(50%) 9 7 30 193 178 ENST00000343958.9 ENST00000333003.10 upstream downstream duplicates(9),inconsistently_clipped(1),mismappers(1),mismatches(2) AAAGAATTTGATAAGAATATAGCCTTGCTGGATGAACAGTGCAAGAAAAATCCAGGTTTTGCTGCTGTTGTTAGAGAATTTGAG___ATGAGCCCTCGCTGTGCTAATCTGGCCCTCAAGCACTACCTGCTCAAGCCGGTTCAGAGGATCCCCCAGTACAGGCTGTTGCTGACAG___ATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG|GCAAGAAAACAGCATATCACTGGTGAAAGCTTACTGGAATGAACTTTTTACTCTTGGTCTTGCCCAGTGCTGGCAAGTGATGAATGTAGCAACTATATTAGCAACATTTGTCAATTGTCTTCACAATAGTCTTCAACAAG___ATAAAATGTCAACAGAAAGAAGAAAATTATTGATGGAGCACATCTTCAAACTACAGGAGTTTTGTAACAGCATGGTTAAACTCTGCATTGATGGATACGAATATGCCTACCTGAAGGCAATAGTACTCTTCAGTCCAG___ATCATCCAAGC KEFDKNIALLDEQCKKNPGFAAVVREFEMSPRCANLALKHYLLKPVQRIPQYRLLLTDYLKNLIEDAGDYRDTQ|gkktayhw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4181 FGD6::NR2C1 ENSG00000180263.14::ENSG00000120798.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 706 TRUE 256 FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113651:- chr12:95470525-95611258:- chr12:95507427:- NR2C1 ENSG00000120798.17 protein_coding - - chr12:95020229-95073628:- chr12:95028524:- chr12:95414005-95467404:- chr12:95422300:- chr12:95110362,chr12:95110372 chr12:95039349,chr12:95039356 NA NA chr12:95504138,chr12:95504148 chr12:95433125,chr12:95433132 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none RhoGEF_domain(92%)|Ligand-binding_domain_of_nuclear_hormone_receptor(56%) RhoGEF(88%)|Hormone_recep(33%) 12 7 16 193 153 ENST00000343958.9 ENST00000333003.10 upstream downstream duplicates(8),mismatches(3) AAAAATGTATTCCACATACATCAAAGAATTTGATAAGAATATAGCCTTGCTGGATGAACAGTGCAAGAAAAATCCAGGTTTTGCTGCTGTTGTTAGAGAATTTGAG___...CAAGCACTACCTGCTCAAGCCGGTTCAGAGGATCCCCCAGTACAGGCTGTTGCTGACAG___ATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG|ATAAAATGTCAACAGAAAGAAGAAAATTATTGATGGAGCACATCTTCAAACTACAGGAGTTTTGTAACAGCATGGTTAAACTCTGCATTGATGGATACGAATATGCCTACCTGAAGGCAATAGTACTCTTCAGTCCAG___ATCATCCAAGCCTAGAAAACATGGAACAGATAGAGAAATTTCAGGAAAAGGCTTATGTGGAATTCCAAGATTATATAACCAAAACATATCCAGA KHYLLKPVQRIPQYRLLLTDYLKNLIEDAGDYRDTQ|dKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4182 FGD6::NR2C1 ENSG00000180263.14::ENSG00000120798.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 706 TRUE 256 FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113651:- chr12:95470525-95611258:- chr12:95507427:- NR2C1 ENSG00000120798.17 protein_coding - - chr12:95020229-95073628:- chr12:95028509:- chr12:95414005-95467404:- chr12:95422285:- chr12:95110362,chr12:95110372 chr12:95039349,chr12:95039356 NA NA chr12:95504138,chr12:95504148 chr12:95433125,chr12:95433132 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none RhoGEF_domain(92%)|Ligand-binding_domain_of_nuclear_hormone_receptor(53%) RhoGEF(88%)|Hormone_recep(33%) 2 2 15 193 190 ENST00000343958.9 ENST00000552861.5 upstream downstream duplicates(3),mismatches(3) AGAATATAGCCTTGCTGGATGAACAGTGCAAGAAAAATCCAGGTTTTGCTGCTGTTGTTAGAGAATTTGAG___...CCGGTTCAGAGGATCCCCCAGTACAGGCTGTTGCTGACAG___ATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG|AAAGAAGAAAATTATTGATGGAGCACATCTTCAAACTACAGGAGTTTTGTAACAGCATGGTTAAACTCTGCATTGATGGATACGAATATGCCTACCTGAAGGCAATAGTACTCTTCAGTCCAG___ATCATCCAAGCCTAGAAAACATGGAACAGATAGAGAAATTTCAGGAAAAGGCTTATGTGGAATTCCAAGATTATATAACCAAAACATATCCAGA...ATTTTGAAAATGGAGCCTGCAGATTATAACTCTCAAATAATTGGTCACAGCATTTGAAAACTGTGACTGCAGTGCTGTAAACTTAACTGTTCTTTGCCAGAA PVQRIPQYRLLLTDYLKNLIEDAGDYRDTQ|errkllmehifklqefcnsmvklcidgyeyaylkaivlfspdhpslenmeqiekfqekayvefqdyitktyp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4183 FGD6::NR2C1 ENSG00000180263.14::ENSG00000120798.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 706 TRUE 256 FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113651:- chr12:95470525-95611258:- chr12:95507427:- NR2C1 ENSG00000120798.17 protein_coding - - chr12:95020229-95073628:- chr12:95025255:- chr12:95414005-95467404:- chr12:95419031:- chr12:95110362,chr12:95110372 chr12:95039349,chr12:95039356 NA NA chr12:95504138,chr12:95504148 chr12:95433125,chr12:95433132 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none RhoGEF_domain(92%)|Ligand-binding_domain_of_nuclear_hormone_receptor(32%) RhoGEF(88%)|Hormone_recep(16%) 0 2 1 193 201 ENST00000343958.9 ENST00000333003.10 upstream downstream duplicates(1),low_entropy(1),mismatches(1) CATATCTAAAAATGTATTCCACATACATCAAAGAATTTGATAAGAATATAGCCTTGCTGGATGAACAGTGCAAGAAAAATCCAGGTTTTGCTGCTGTTGTTAGAGAATTTGAG___...CCCAG?ACAGGCTGTTGCTGACAG___ATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG|ATCATCCAAGCCTAGAAAACATGGAACAGATAGAGAAATTTCAGGAAAAGGCTTATGTGGAATTCCAAGATTATATAACCAAAACATATCCAGATGACACCTACAG___GTTATCCAG...CTACTACTCAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATTGTTTTTCAAAGGTCTCATTGGCAATATACGAATTGACAGTGTTATCCCACATATTTTGAAAATGGAGCCTGCA Q?RLLLTDYLKNLIEDAGDYRDTQ|dHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4184 FGD6::NR2C1 ENSG00000180263.14::ENSG00000120798.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 706 TRUE 256 FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113651:- chr12:95470525-95611258:- chr12:95507427:- NR2C1 ENSG00000120798.17 protein_coding - - chr12:95020229-95073628:- chr12:95022403:- chr12:95414005-95467404:- chr12:95416179:- chr12:95110362,chr12:95110372 chr12:95039349,chr12:95039356 NA NA chr12:95504138,chr12:95504148 chr12:95433125,chr12:95433132 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none RhoGEF_domain(92%)|Ligand-binding_domain_of_nuclear_hormone_receptor(14%) RhoGEF(88%)|Hormone_recep(0%) 0 1 0 193 195 ENST00000343958.9 ENST00000333003.10 upstream downstream mismatches(1) TCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG|GTTATCCAGACTACTACTCAGATTGCCAGCTTTAAGACTGATGAATGCTACCATCACTGAAGAATTGTTTTTCAAAGGTCTCATTGGCAA...ACTGTTCTTTGCCAGAACACAAGACACCAAATTGAACTCACTGCTTTTGAGGCATCTGGAAATTTTTACTTTAAAAAGTAACCAGAATCCAAGGTATTTTT LIEDAGDYRDTQ|gypdyysdcql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4185 ZDHHC16::RRP12 ENSG00000171307.19::ENSG00000052749.14 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC16 ENSG00000171307.19 protein_coding + + chr10:97446170-97457370:+ chr10:97454799:+ chr10:99205927-99217127:+ chr10:99214556:+ RRP12 ENSG00000052749.14 protein_coding - + chr10:97356358-97426076:- chr10:97425717:+ chr10:99116115-99185833:- chr10:99185474:+ chr10:97454923,chr10:97454924 chr10:97424043,chr10:97424041 NA NA chr10:99214680,chr10:99214681 chr10:99183800,chr10:99183798 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none DHHC_palmitoyltransferase(79%)| DHHC(71%)| 17 7 5 745 40 ENST00000370854.7 unknown downstream upstream duplicates(6) ATGACTCTGGGCTGTGTCTACTGCAGCTATGGAAGTTGGGACCTTTTCCGGGAGGCTTATGCTGCCATTGAG___AAAATGAAACAGCTCGACAAGAACAAACTACAGGCGGTTGCCAACCAG___ACTTATCACCAGACCCCACCACCCACCTTCTCCTTTCGAGAAAGGATGACTCACAAGAGTCTTGTCTACCTCTGGTTCCTGTGCAG|ATGAGGCTGAGAGGTTTCCCGACCTGCCCAAAGACACAAAGCAAGTAGAATGTACGAGTGAAGACTCGAACACAGGTCCGTGAATCAATCTCTGCGTGGGGATGGGAGCGGTTCCAGTGATAAG MTLGCVYCSYGSWDLFREAYAAIEKMKQLDKNKLQAVANQTYHQTPPPTFSFRERMTHKSLVYLWFLCr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4187 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 366 TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105470688:- chr7:105080108-105162718:- chr7:105111135:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105306571:- chr7:104751151-105039755:- chr7:104947018:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none tRNA_pseudouridine_synthase_D_(TruD)(54%)|Protein_kinase_domain(100%) TruD(65%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 8 6 4 310 45 ENST00000469408.6 ENST00000465112.5 upstream downstream duplicates(2),mismatches(1) TATCAAAAAAACCCACTGAAATTGGGAGAGCTTCAAGGAAACCACTTCACTGTTGTTCTCAG___AAATATAACAGGAACTGATGACCAAGTACAGCAAGCTATGAACTCTCTCAAGGAGATTGGATTTATTAACTACTATGGAATGCAAAGATTTGGAACCACAGCTGTCCCTACGTATCAGGTTGGAAG___AGCTATACTACAAAATTCCTGGACAGAAGTCATGGATTTAATATTGAAACCCCGCTCTGGAG___CTGAAAAGGGCTACTTGGTTAAATGCAGAGAAGAATGGGCAAAGACCAAAGACCCAACTGCTGCCCTCAGAAAACTACCTGTCAAAAGGTGTGTGGAAGGGCAGCTGCTTCGAGGACTTTCAAAATATGGAATGAAGAATATAGTCTCTGCATTTGGCATA|GTGGAGTACATCCTGCTGCTTCAAGGGTAGAAGACTCCTCACTGCTTTCCTTCATGAGATTTCAAAGGAAGTGTTGGTTTTTTTTTTGCCTGGTTCAAGTATTGACCAAGAAGATGACAGTGATGTGGTCTCTTAGGTTTCAAAATTTCTACTTAAACATCTTGGTTCTAGTGATACGTACTTTGCAAA YQKNPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGI|veyilllqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4188 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 367 TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105470761:- chr7:105080108-105162718:- chr7:105111208:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105203785:- chr7:104751151-105039755:- chr7:104844232:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none tRNA_pseudouridine_synthase_D_(TruD)(48%)|Protein_kinase_domain(100%) TruD(65%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 6 6 3 362 66 ENST00000481939.5 ENST00000482862.2 upstream downstream none ATTGGGAGAGCTTCAAGGAAACCACTTCACTGTTGTTCTCAG___AAATATAACAGGAACTGATGACCAAGTACAGCAAGCTATGAACTCTCTCAAGGAGATTGGATTTATTAACTACTATGGAATGCAAAGATTTGGAACCACAGCTGTCCCTACGTATCAGGTTGGAAG___AGCTATACTACAAAATTCCTGGACAGAAGTCATGGATTTAATATTGAAACCCCGCTCTGGAG___CTGAAAAGGGCTACTTGGTTAAATGCAGAGAAGAATGGGCAAAGACCAAAGACCCAACTGCTGCCCTCAGAAAACTACCTGTCAAAAG|GCCGGAGCCTCAACAGAAAGCTCCTTTAGTTCCTCCTCCTCCACCGCCACCACCACCACCACCGCCACCTTTGCCAGACCCCACACCCCCGGAGCCAGAGGAGGAGATCCTGGGATCAGATGATGAGGAGCAAGAGGACCCTGCGGACTACTGCAAAG___GTGGATATCATCCAGTGAAAATTGGAGACCTCTTCAATGGCCGGTATCATGTTATTAGAAAGCTTGGATGGGGG LGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKr|PEPQQKAPLVPPPPPPPPPPPPPLPDPTPPEPEEEILGSDDEEQEDPADYCKGGYHPVKIGDLFNGRYHVIRKLGW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4190 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105470761:- chr7:105080108-105162718:- chr7:105111208:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105306571:- chr7:104751151-105039755:- chr7:104947018:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none tRNA_pseudouridine_synthase_D_(TruD)(48%)|Protein_kinase_domain(100%) TruD(65%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 3 3 3 362 45 ENST00000481939.5 ENST00000465112.5 upstream downstream mismatches(1) GCCCACCTGAATAAGTGCTTGATGAACTTTAAGCTAGGGAATTTCAGCTATCAAAAAAACCCACTGAAATTGGGAGAGCTTCAAGGAAACCACTTCACTGT...AGCAAGCTATGAACTCTCTCAAGGAGATTGGATTTATTAACTACTATGGAATGCAAAGATTTGGAACCACAGCTGTCCCTACGTATCAGGTTGGAAG___AGCTATACTACAAAATTCCTGGACAGAAGTCATGGATTTAATATTGAAACCCCGCTCTGGAG___CTGAAAAGGGCTACTTGGTTAAATGCAGAGAAGAATGGGCAAAGACCAAAGACCCAACTGCTGCCCTCAGAAAACTACCTGTCAAAAG|GTGGAGTACATCCTGCTGCTTCAAGGGTAGAAGACTCCTCACTGCTTTCCTTCATGAGATTTCAAAGGAAGTGTTGGTTTTTTTTTTGCCTGGTTCAAGTATTGACCAAGAAGATGACAGTGATGTGGTCTCTTAGGTTTCAAAATTTCTACTTAAACATCTTGGTTCTAGTGATACGTAC QAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKr|WSTSCCFKGRRLLTAFLHEISKEVLVFFLPGSSIDQEDDSDVVS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4191 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105472132:- chr7:105080108-105162718:- chr7:105112579:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105306571:- chr7:104751151-105039755:- chr7:104947018:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none tRNA_pseudouridine_synthase_D_(TruD)(41%)|Protein_kinase_domain(100%) TruD(61%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 1 379 45 ENST00000481939.5 ENST00000465112.5 upstream downstream none GATGACCAAGTACAGCAAGCTATGAACTCTCTCAAGGAGATTGGATTTATTAACTACTATGGAATGCAAAGATTTGGAACCACAGCTGTCCCTACGTATCA...AGAGCTATACTACAAAATTCCTGGACAGAAGTCATGGATTTAATATTGAAACCCCGCTCTGGAG|GTGGAGTACATCCTGCTGCTTCAAGGGTAGAAGACTCCTCACTGCTTTC...GATTTCAAAGGAAGTGTTGGTTTTTTTTTTGCCTGGTTCAAGTATTGACCAAGAAGATGACAGTGATGTGGTCTCTTAGGTTTCAAAATTTCTACTTAAAC RAILQNSWTEVMDLILKPRSG|ggvhpaasrvedssll NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4206 GPHN::PALS1 ENSG00000171723.16::ENSG00000072415.10 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:67023675:+ chr14:66974125-67648520:+ chr14:67490392:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67301389:+ chr14:67707430-67802778:+ chr14:67768106:+ chr14:67051015,chr14:67051015,chr14:67051008 chr14:67298478,chr14:67298482,chr14:67298468 NA NA chr14:67517732,chr14:67517732,chr14:67517725 chr14:67765195,chr14:67765199,chr14:67765185 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Probable_molybdopterin_binding_domain(52%)|Guanylate_kinase(100%),L27_domain(84%),PDZ_domain(100%),Variant_SH3_domain(100%) MoCF_biosynth(92%)|Guanylate_kin(100%),L27(6%),PDZ(100%),PDZ_6(100%),SH3_1(100%),SH3_2(100%) 1 2 6 40 134 ENST00000315266.9 ENST00000677382.1 downstream upstream duplicates(2),mismappers(1) CTTCcGAATCGCCTCGTGCTCAGGCTACATCTCGCCTCTCTACAGCTTCCTGCCCAACACCAAAA___GTCCAGTCCAGGTGCAGCAGCAAGGAGAACATTCTCAGAGCCA|GTACAAACTGTTTTGAAGCCAGTTCATCATAAGGAAGGACAAGAACTAACTGCTTTGCTGAATACTCCACATATTCAG___GCACTTTTACTGGCCCACGATAAGGTTGCTGAGCAGGAAATGCAGCTAGAGCCCATTACAGATGAGAGAGTTTATGAAAG...AAACTGTAAAAATAGTTCGTATAGAAAAGGCTCGTGATATTCCGTTG___GGTGCTACAGTTCGTAATGAAATGGACTCTGTCATCATTAGCCGGATAGTAAAAGGGGGTGCTGCAGAGAAAAGTGGTCTGTTGCATGAAGGAGATGAAGTTCTAGAGATTAATGGCATTGAAATTCGG...AGGTTTTTGACTTGTTG___TCTGATATGCATGGTACTTTGACTTTTGTCCTGATTCCCAGTCAACAGATCAAGCCGCCTCCTGCCAAGGAAACAGTA___ATCCAT SESPRAQATSRLSTASCPTPKVQSRCSSKENILRA|stncfeasss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4230 NIN::SAV1 ENSG00000100503.27::ENSG00000151748.15 ACHN SRR8615405 SRR8639170 KIDNEY carcinoma (renal_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NIN ENSG00000100503.27 protein_coding - - chr14:50719763-50831162:- chr14:50772301:- chr14:51186481-51297880:- chr14:51239019:- SAV1 ENSG00000151748.15 protein_coding - - chr14:50632058-50668306:- chr14:50634174:- chr14:51098776-51135024:- chr14:51100892:- chr14:50771718,chr14:50771718,chr14:50771720,chr14:50771720 chr14:50634975,chr14:50634974,chr14:50634923,chr14:50634974 NA NA chr14:51238436,chr14:51238436,chr14:51238438,chr14:51238438 chr14:51101693,chr14:51101692,chr14:51101641,chr14:51101692 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none none none 1 1 1 311 429 ENST00000530997.7 ENST00000555720.5 upstream downstream none GGACGACGTACCACAACCTCATCAGCAATGACAAGTACCATTGGCTTTCGGGTCTTCTCCTGCCTGGATGATGGGATGGGCCATGCATCTGTGGAGAGAATACTcGACACCTGGCAGGAAGAGGGCATTGAGAACAGCCAGGAGATCCTGAAG|CCAGTGCTGTTACTGCATTTAGCATGGCTCTGACGAGGCAGTGGAGAGTTCCTGACAGCATAGCATACTGCCTTCTGACAGACTGGGTTAAGCTACCAAAAATGACAACCAGGGATTCAAAAAAAATTTTTGGTCATTAAATCGA GRRTTTSSAMTSTIGFRVFSCLDDGMGHASVERILDTWQEEGIENSQEILK|pvlllhlawl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ninein (GSK3B interacting protein) 1 MPN leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4242 TAF5L::NUP133 ENSG00000135801.11::ENSG00000069248.12 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 368 FALSE NA FALSE NA TAF5L ENSG00000135801.11 protein_coding - - chr1:229593134-229626122:- chr1:229610106:- chr1:229728881-229761869:- chr1:229745853:- NUP133 ENSG00000069248.12 protein_coding - - chr1:229440259-229508341:- chr1:229445002:- chr1:229576006-229644088:- chr1:229580749:- chr1:229605907,chr1:229605907 chr1:229447152,chr1:229447159 NA NA chr1:229741654,chr1:229741654 chr1:229582899,chr1:229582906 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none WD40_associated_region_in_TFIID_subunit__NTD2_domain(13%)| TFIID_NTD2(0%)| 46 24 60 345 301 ENST00000258281.7 ENST00000261396.6 upstream downstream duplicates(4),mismappers(4),mismatches(11) GGCGGGGGGAGCCGGAGCCGCCTGGGATGTTCA___GTCATGAAACGAGTGCGTACCGAGCAGATTCAGATGGCAGTGTCCTGCTACCTCAAACGCCGGCAGTACGTGGACTCAGATGGTCCCCTGAAGCAAGGACTGCGGCTGTCACAGACTGCTGAAGAGATGGCGGCCAATCTAACAG___TGCAATCAGAATCTGGTTGTGCCAACATAGTGTCTGCAGCCCCTTGCCAGGCAGAACCCCAGCAATATGAAGTACAGTTTGGACGACTGCGGAATTTTCTCACTG|CTGGTCCAGTTCTGATGGCAAAGATGATCCAATTGAAGTATCTAAAGACAGTATATTTGTGAAGATCTTACAGAAACTTTTAAAAGATG___GCATTCAGCTCAGTGAGTACTTACCGGAGGTGAAAGACCTGCTACAAGCGGATCAGCTTGGAAGCTTAAAGTCCAATC MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLT|agpvlmakmiqlkylktvyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4243 GLCCI1::MAD1L1 ENSG00000106415.13::ENSG00000002822.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GLCCI1 ENSG00000106415.13 protein_coding + + chr7:7968796-8094272:+ chr7:8071131:+ chr7:8008427-8133902:+ chr7:8110761:+ MAD1L1 ENSG00000002822.16 protein_coding - + chr7:1815793-2233243:- chr7:2116660:+ chr7:1855429-2272878:- chr7:2156295:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_Family_FAM117(73%)| FAM117(81%)| 38 15 41 277 77 ENST00000223145.10 unknown downstream upstream duplicates(6),mismatches(3) GATCAAGGTCAGTTCCTATGCCACTGTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCCCTGCAATGTAGAAGGAATAAGTCCTGAATTAGAAAAGGTATTCATTAAAGAAAATAATGGGAAGGAAGAAGTATCCAAG___CCGTTGGACATACCAGATGGTCGAAGAGCTCCACTTCCTGCTCATTACCGGAGCAGTAGTACTCGCAGCATTGACACTCAGACTCCTTCTGTCCAGGAGCGCAGCAGTAGCTGCAGCAGTCATTCACCCTGTGTCTCCCCTTTTTGTCCCCCGGAATCCCAGGATGGTAGCCCTTGCTCAACAGAAGATTTGCTCTATGATCGTGATAAAG|GGGGCCCAGGTCCATCGGACTGGAGCAGAAAAACCAGAGAAGAAGCCTGAGGAAGAAGCAGGACAGGCCACCAGACCCAACGGGGAGGAAGGCGTCTGGATGTCCCAGAGTTAGTGAGAGGGCCTTAGCCAAGGAGGCAGGCACATCACCAAGTACGAGGTGGTCTGCACCCTGCCTCTGCAGGCCTGGGCGGTGCTGCACAAAGTCCCAGGAGATCCTGAAGTGTGCCCTTGGTAAAGAGGACAGTGGAGACAAAGAAGTATTTGCA SRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDK|ggpgpsdwsrktreea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4244 GLCCI1::ENSG00000286192 ENSG00000106415.13::ENSG00000286192.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GLCCI1 ENSG00000106415.13 protein_coding + + chr7:7968796-8094272:+ chr7:8071131:+ chr7:8008427-8133902:+ chr7:8110761:+ ENSG00000286192 ENSG00000286192.1 protein_coding - + chr7:1815804-2242215:- chr7:2116660:+ chr7:1855440-2281850:- chr7:2156295:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_Family_FAM117(73%)| FAM117(81%)| 38 15 41 277 77 ENST00000223145.10 unknown downstream upstream duplicates(6),mismatches(3) GATCAAGGTCAGTTCCTATGCCACTGTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCCCTGCAATGTAGAAGGAATAAGTCCTGAATTAGAAAAGGTATTCATTAAAGAAAATAATGGGAAGGAAGAAGTATCCAAG___CCGTTGGACATACCAGATGGTCGAAGAGCTCCACTTCCTGCTCATTACCGGAGCAGTAGTACTCGCAGCATTGACACTCAGACTCCTTCTGTCCAGGAGCGCAGCAGTAGCTGCAGCAGTCATTCACCCTGTGTCTCCCCTTTTTGTCCCCCGGAATCCCAGGATGGTAGCCCTTGCTCAACAGAAGATTTGCTCTATGATCGTGATAAAG|GGGGCCCAGGTCCATCGGACTGGAGCAGAAAAACCAGAGAAGAAGCCTGAGGAAGAAGCAGGACAGGCCACCAGACCCAACGGGGAGGAAGGCGTCTGGATGTCCCAGAGTTAGTGAGAGGGCCTTAGCCAAGGAGGCAGGCACATCACCAAGTACGAGGTGGTCTGCACCCTGCCTCTGCAGGCCTGGGCGGTGCTGCACAAAGTCCCAGGAGATCCTGAAGTGTGCCCTTGGTAAAGAGGACAGTGGAGACAAAGAAGTATTTGCA SRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAHYRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDK|ggpgpsdwsrktreea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4245 NUP62::ATF5 ENSG00000213024.13::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 716 TRUE 258 NUP62 ENSG00000213024.13 protein_coding - - chr19:49906825-49929764:- chr19:49927694:- chr19:50410082-50433021:- chr19:50430951:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 46 21 26 904 1549 ENST00000352066.8 ENST00000423777.7 upstream upstream duplicates(6),mismatches(5) CGAAAGGGCGGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGGTGGGAGCGGAGAGCGCAGGCGTG___AAACCCACCTTGTCCCATCCACATCAGGACATCCCAGCTGGAGTTCAACCTTCATCCCTTCTGTGGCAGTTAGGAGACTGAATCAAGGTCCAGAGAAGGTGGAGGAATCCTGATACTGAGCG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGCTCGTAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4246 NUP62::ATF5 ENSG00000213024.13::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 716 TRUE 258 NUP62 ENSG00000213024.13 protein_coding - - chr19:49906825-49929764:- chr19:49918508:- chr19:50410082-50433021:- chr19:50421765:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 6 2 28 55 1549 ENST00000597814.1 ENST00000423777.7 upstream upstream duplicates(5),mismatches(2) GGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGGTGGGAGCGGAGAGCGCAGGCG?G...___GTCCTTAATGCAAGTCGGTTATGCCTGTAGGTTGAAAGGCATCAGGGAGGAAAATGGGACCAGAATGCCAGGTGACCTAAGGAGGAGAGAGAGAGGACAGTTGAAAACCCACAG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGCTCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4247 NUP62::ATF5 ENSG00000213024.13::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 716 TRUE 258 NUP62 ENSG00000213024.13 protein_coding - - chr19:49906825-49929764:- chr19:49929326:- chr19:50410082-50433021:- chr19:50432583:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 0 11 18 3593 1549 ENST00000422090.2 ENST00000423777.7 upstream upstream duplicates(1),mismatches(3) CCACGAGCTGCGAAAGGGCGGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGGTGGGAGCGGAGAGCGCAGGCGTG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGCTCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCCCCTGGCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4248 NUP62::ATF5 ENSG00000213024.13::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 716 TRUE 258 NUP62 ENSG00000213024.13 protein_coding - - chr19:49906825-49929764:- chr19:49929350:- chr19:50410082-50433021:- chr19:50432607:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 0 1 5 3558 1549 ENST00000700473.1 ENST00000423777.7 upstream upstream mismatches(1) CCCACCCCCCAGGGCTCCCTAAAGAGGGCCACGAGCTGCGAAAGGGCGGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGCTCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCCCCTGGCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4249 NUP62::ATF5 ENSG00000213024.13::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 716 TRUE 258 NUP62 ENSG00000213024.13 protein_coding - - chr19:49906825-49929764:- chr19:49929417:- chr19:50410082-50433021:- chr19:50432674:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 1 0 0 1150 1549 ENST00000700474.1 ENST00000423777.7 upstream upstream none CCACCCCCCAGGGCTCCCTAAAGAGGGCCACGAGCTGCGAAAGGGCGGGAAAGGCAGTTGGAGAAGAG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4251 ADIPOR2::LRTM2 ENSG00000006831.10::ENSG00000166159.11 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 369 TRUE 717 TRUE 259 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ LRTM2 ENSG00000166159.11 protein_coding + + chr12:1820267-1836753:+ chr12:1834267:+ chr12:1929433-1945919:+ chr12:1943433:+ chr12:1733503 chr12:1832972 NA NA chr12:1842669 chr12:1942138 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through high none none |VGCC_alpha2(35%) 11 20 22 172 96 ENST00000357103.5 ENST00000543818.5 downstream upstream duplicates(2),low_entropy(2),mismappers(2),mismatches(9) GGCGAGAGCGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|GGGGACGCTTGGACCAGCTTGCCTGCACCCTGCCCAAGGAGCTGAGGGGGAAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTACTGCTCCCAGCTGGAGGACGAGAATAGCTCAGCTGGGCTGGATATTCCTGGGCCACCCTGCACCAAGGCCAGTCCAGAGCCTGCTAAGCCCAAGCCCGGGGCTGAGCCGGAGCCGGAGCCCAGCACAGCCTGCCCACAGAAGCAGAGGCACCGGCCGGCGAGCGTGAGGCGAGCCATGGGCACGGTGATCATTGCAGGGGTCGTGTGCGGCGTCGTCTGCATCATGATGGTGGTGGCCGCTGCCTATGGCTGCATCTACGCCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4252 ADIPOR2::LRTM2 ENSG00000006831.10::ENSG00000166159.11 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 370 TRUE 717 TRUE 259 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691191:+ chr12:1797740-1897840:+ chr12:1800357:+ LRTM2 ENSG00000166159.11 protein_coding + + chr12:1820267-1836753:+ chr12:1834267:+ chr12:1929433-1945919:+ chr12:1943433:+ chr12:1733503 chr12:1832972 NA NA chr12:1842669 chr12:1942138 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none none |VGCC_alpha2(35%) 6 13 14 165 96 ENST00000357103.5 ENST00000543818.5 downstream upstream duplicates(1),mismatches(7) TGTCGCGGCGGCGAGAGCGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCG|GGGGACGCTTGGACCAGCTTGCCTGCACCCTGCCCAAGGAGCTGAGGGGGAAGGACATGCGGATGGTCCCCATGGAGATGTTCAACTACTGCTCCCAGCTGGAGGACGAGAATAGCTCAGCTGGGCTGGATATTCCTGGGCCACCCTGCACCAAGGCCAGTCCAGAGCCTGCTAAGCCCAAGCCCGGGGCTGAGCCGGAGCCGGAGCCCAGCACAGCCTGCCCACAGAAGCAGAGGCACCGGCCGGCGAGCGTGAGGCGAGCCATGGGCACGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4254 CNOT3::TSEN34 ENSG00000088038.20::ENSG00000170892.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 718 FALSE NA CNOT3 ENSG00000088038.20 protein_coding + + chr19:54137749-54155681:+ chr19:54137993:+ chr19:54641465-54659419:+ chr19:54641709:+ TSEN34 ENSG00000170892.13 protein_coding + + chr19:54189938-54194536:+ chr19:54192116:+ chr19:54693789-54698394:+ chr19:54695967:+ chr19:54139770,chr19:54139771 chr19:54192051,chr19:54192049 NA NA chr19:54643486,chr19:54643487 chr19:54695902,chr19:54695900 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |tRNA_intron_endonuclease__catalytic_C-terminal_domain(100%) |tRNA_int_endo(100%) 12 6 32 268 777 ENST00000221232.11 ENST00000455798.6 downstream upstream duplicates(3),mismatches(10) TCTTGGACCGGGCCCGGTCAGCTTCCGCGGAGCCATCGGCAGACGCCGCGGCCTCCCTTGAGCCCCGACCCCCGTCGTCAGAACAACCCCGGGCCCACTCCCCCAACCCCACTTCCGCTTCGCGCCGCTATCGCGATAGCGCCCGGGCCCGGGGCGCGAGAAAAAGGCGGCGGGCGCTCGCCTCCCCCGCCTGTCGCGATACGCTCCTCAGCGGCGGCGCCAGCTCCTGTG|GCCCCTCGTCTTCCCAAGCAGGACCCTCAAATGGGGTAGCCCCCTTGCCCAGATCTGCTCTCCTTGTCCAGCTGGCCACTGCCAGGCCTCGACCGGTCAAGGCCAGGCCCCTGGACTGGCGTGTCCAGTCTAAAGACTGGCCCCACGCCGGCCGCCCTGCCCACGAGCTGCGCTACAGTATCTACAGAGACCTGTGGGAGCGAGGCTTCTTCCTCAGTGCGGCTGGCAAGTTCGGAGGTGACTTCCTGGTCTATCCTG___GTGACCCCCTCCGCTTCCACGCCCATTATATCGCTCAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCR4-NOT transcription complex subunit 3 1 Yes T-ALL leukaemia_lymphoma TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 4256 SNX8::MAD1L1 ENSG00000106266.11::ENSG00000002822.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 371 FALSE NA FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1816228:- chr7:1855429-2272878:- chr7:1855864:- chr7:2287066 chr7:1872633 NA NA chr7:2326701 chr7:1912269 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Mitotic_checkpoint_protein(7%) |MAD(0%) 8 33 6 525 114 ENST00000222990.8 ENST00000406869.5 upstream downstream duplicates(4),mismatches(4) CGCGCGATGGACCCGCTGCCCGCGGCTGCAGTCGGGGCGGCAGCTGAGGCGGAGGCTGACGAGGAGGCGGATCCCCCGGCGTCAG|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGGGGCATAGCCGGAGCCACTCTGCTTGGCCTGACCTGCAGGTCCCCTGCCCCGCCAGCCACAGGCTGGGTGCACGTCCTGCCTCTCCAGCCCCACAGGGCAGCAGCATGACTGACAGACACGCT RAMDPLPAAAVGAAAEAEADEEADPPAS|ghqplgfqdaatgdrvlthrgrahrgapaapgqhpclpqlahpralqppdrgvacrlggiagatllgltcrspappatgwvhvlplqphraaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder,Esophagus BLADDER,OESOPHAGUS no_match 2278100,2314328 FALSE,TRUE 2014642,2014642 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4257 SNX8::ENSG00000286192 ENSG00000106266.11::ENSG00000286192.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:1816228:- chr7:1855440-2281850:- chr7:1855864:- chr7:2287066 chr7:1872633 NA NA chr7:2326701 chr7:1912269 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion high none none |MAD(0%) 8 33 6 525 114 ENST00000222990.8 ENST00000651235.1 upstream downstream duplicates(4),mismatches(4) CGCGCGATGGACCCGCTGCCCGCGGCTGCAGTCGGGGCGGCAGCTGAGGCGGAGGCTGACGAGGAGGCGGATCCCCCGGCGTCAG|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGGGGCATAGCCGGAGCCACTCTGCTTGGCCTGACCTGCAGGTCCCCTGCCCCGCCAGCCACAGGCTGGGTGCACGTCCTGCCTCTCCAGCCCCACAGGGCAGCAGCATGACTGACAGACACGCT RAMDPLPAAAVGAAAEAEADEEADPPAS|ghqplgfqdaatgdrvlthrgrahrgapaapgqhpclpqlahpralqppdrgvacrlggiagatllgltcrspappatgwvhvlplqphraaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4258 TRMT11::NCOA7 ENSG00000066651.20::ENSG00000111912.20 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 372 FALSE NA FALSE NA TRMT11 ENSG00000066651.20 protein_coding + + chr6:125986479-126203817:+ chr6:126021280:+ chr6:126307625-126524963:+ chr6:126342426:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125915333:+ chr6:126102307-126253180:+ chr6:126236479:+ chr6:126031396,chr6:126031396 chr6:125901128,chr6:125901125 NA NA chr6:126352542,chr6:126352542 chr6:126222274,chr6:126222271 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Putative_RNA_methylase_family_UPF0020(100%)|TLD(100%) UPF0020(100%)|TLD(100%) 11 8 27 172 116 ENST00000334379.11 ENST00000368357.7 downstream upstream duplicates(3),mismappers(1),mismatches(4) CGCAGCTGAGACCCTCGTTTTAGGTGGAAGACTAGTCTATTGGTTACCGGTGTATACGCCAGA___ATACACTGAAGAGATGGTGCCTTGGCACCCTTGCCTGGAACTCGTTAGCAACTGCGAGCAGAAGCTTTCCAGTCACACATCAAGGCGCTTGATCACAATGGAAAAGGTGAAGAAATTTGAG|GGTGGATCATTTGTACACATTCTTTGTTCAGTGGTCTCCCGATGTCTATGGAAAAGATGCCAAAGAGCAAGGCTTTGTGGTGGTGGAGAAGGAAGAACTGAACATGATTGACAACTTCTTCAGTGAGCCAACAACCAAGAGCTGGGAG___ATCATCACTGTTGAAGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGGACGAAGAGGTGCTGCCTGTCC AAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE|ggsfvhilcsvvsrclwkrcqrarlcgggegrtehd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus exact TRUE Lung adenocarcinoma LUNG exact 126342426|126314968|126334247|126342426 TRUE|FALSE|FALSE|TRUE 126242089|126242089|126243828|126249320 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4259 IL4I1::ATF5 ENSG00000104951.16::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 719 TRUE 260 IL4I1 ENSG00000104951.16 protein_coding - - chr19:49889654-49929539:- chr19:49927694:- chr19:50392911-50432796:- chr19:50430951:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 17 21 6 904 1549 ENST00000341114.7 ENST00000423777.7 upstream upstream duplicates(2),mismatches(4) CGGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGGTGGGAGCGGAGAGgGCAGGCGTG...GAAACCCACCTTGTCCCATCCACATCAGGACATCCCAGCTGGAGTTCAACCTTCATCCCTTCTGTGGCAGTTAGGAGACTGAATCAAGGTCCAGAGAAGGTGGAGGAATCCTGATACTGAGCG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4260 IL4I1::ATF5 ENSG00000104951.16::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 719 TRUE 260 IL4I1 ENSG00000104951.16 protein_coding - - chr19:49889654-49929539:- chr19:49929326:- chr19:50392911-50432796:- chr19:50432583:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 0 11 16 3593 1549 ENST00000341114.7 ENST00000423777.7 upstream upstream duplicates(1),mismatches(3) CTAAAGAGGGCCACGAGCTGCGAAAGGGCGGGAAAGGCAGTTGGAGAAGAGGTAAGCGGTTACTCACTCCATGGCTGCAGCAAGGAGAGGCGGCGGCGGCCTCGGCTGAAGAAAGAAGGTGGGAGCGGAGAGCGCAGGCGTG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCCTCGTGCCAGCTGCTGGTGCAGCCTCTCCTGTTGCCATCAGTGCCCAGCACCTGTGCTACAGCCATGTCACTCCTGGCGACCCTGGGGCTGGAGCTGGACAGGGCCCTGCTCCCAGCTAGTGGGCTGGGATGGCTCGTAGACTATGGGAAACTCCCCCCGGCCCCTGCCCCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4261 IL4I1::ATF5 ENSG00000104951.16::ENSG00000169136.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 719 TRUE 260 IL4I1 ENSG00000104951.16 protein_coding - - chr19:49889654-49929539:- chr19:49929417:- chr19:50392911-50432796:- chr19:50432674:- ATF5 ENSG00000169136.13 protein_coding + + chr19:49928702-49933935:+ chr19:49930732:+ chr19:50431959-50437192:+ chr19:50433989:+ chr19:49914543,chr19:49914547 chr19:49930585,chr19:49930581 NA NA chr19:50417800,chr19:50417804 chr19:50433842,chr19:50433838 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 1 0 0 1150 1549 ENST00000596022.5 ENST00000423777.7 upstream upstream none CCACCCCCCAGGGCTCCCTAAAGAGGGCCACGAGCTGCGAAAGGGCGGGAAAGGCAGTTGGAGAAGAG|GTCTTCCACTTTCGCCTTGGTGCCTGTCTTCGCCCACCTGAGCATCCTCCAGAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4751 chr19:49933064-49933137:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4262 SPIDR::ENSG00000253664 ENSG00000164808.17::ENSG00000253664.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 720 TRUE 261 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47440542:+ chr8:48173470-48648868:+ chr8:48353104:+ ENSG00000253664 ENSG00000253664.1 lncRNA + + chr8:51257688-51321118:+ chr8:51312469:+ chr8:52170248-52233678:+ chr8:52225029:+ chr8:47451163,chr8:47451161 chr8:51293233,chr8:51293228 NA NA chr8:48363725,chr8:48363723 chr8:52205793,chr8:52205788 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Domain_of_unknown_function_(DUF4502)(99%)| DUF4502(53%)| 5 13 23 138 34 ENST00000297423.9 unknown downstream upstream duplicates(2),mismatches(1) TGAAAATTTTAGAGCTGCATGAGGAATGTGCCATGCAAGTTGCCATGTGTGAGCAGTTATTGGGGTCACCAGCCACCAGCTCCTCCCAAAGTGTGGCTCCCAGGCCTGGAGCTGGCCTGAAAGTTCTCTTCACCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGACACTGTCCGGATCTTCCCTCCCTG|TGTCATAGCGTTTGCAAAAAATATTTGAAGATGGTGAAAGTGTTGTGGGTGGCCTCCCAAAATTATAGCTGGTTTTGAAACTACCACTGTTGCTGCTACCCATAGAGCATCTTGCTACTTGGAACACTGCCGAGGGCTTCGAGTCAACATGACTTCATATTTAAAGGTCAGCTCAGGTTTTTGGAAGTCAAGCCACTCCATTTTGGACTGCCATCCGCAACCCTGAAGCCAGTGTGGTGTGCTGGCTCCTGTAATTTCCTAGCTGTTAATGTAATGACACATGGCTTCCAAC KILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGLKVLFTKETAGYLRGRPQDTVRIFPPc|viafakni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4263 SPIDR::ENSG00000253664 ENSG00000164808.17::ENSG00000253664.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 720 TRUE 261 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47440542:+ chr8:48173470-48648868:+ chr8:48353104:+ ENSG00000253664 ENSG00000253664.1 lncRNA + + chr8:51257688-51321118:+ chr8:51320720:+ chr8:52170248-52233678:+ chr8:52233280:+ chr8:47451163,chr8:47451161 chr8:51293233,chr8:51293228 NA NA chr8:48363725,chr8:48363723 chr8:52205793,chr8:52205788 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Domain_of_unknown_function_(DUF4502)(99%)| DUF4502(53%)| 0 1 1 138 5 ENST00000297423.9 ENST00000521294.1 downstream upstream none GGACACTGTCCGGATCTTCCCTCCCTG|TATGCTTCAACTGGCTGGCTAGAAGTGAAATGGGGAGTTGGACTGGAAAACTCGCAGCACAAACCTCACAAATGCAGTGAGTGCAGTCTTCTTTCATCCAGCGCTCCTCGGCCTTCC...TAACATCTGTACACCCTGCCTGCCTCAGGCGTGCCTCCAGCTTGTTTATCTGAAAGGGGAGGCAAAGGAAAGAAGAGTGGAAATTGAAGCGGATAGCAACA DTVRIFPPc|mlqlag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4264 RFC2::EIF4H ENSG00000049541.11::ENSG00000106682.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 373 FALSE NA FALSE NA RFC2 ENSG00000049541.11 protein_coding - - chr7:74231499-74254458:- chr7:74254271:- chr7:73645829-73668788:- chr7:73668601:- EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74194741:+ chr7:73588561-73611452:+ chr7:73609071:+ chr7:74253921,chr7:74253926 chr7:74192105,chr7:74192100 NA NA chr7:73668251,chr7:73668256 chr7:73606435,chr7:73606430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 12 16 13 1080 3146 ENST00000055077.8 ENST00000678438.1 upstream upstream duplicates(3),mismatches(5) CGAGAATGGAGGTGGAGGCCGTCTGTGGTGGCGCGGGCGAGGTGGAGGCCCAGGACTCTGACCCTGCCCCTGCCTTCAGCAAGGCCCCCGGCAGCGCCGGCCACTACGAACTGCCGTG|GCTTCAGGGATGACTTCTTAGGGGGCAGGGGAGGTAGTCGCCCAGGCGACCGGCGAACAGGCCCCCCCATGGGCAGCCGCTTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTTCAGAGAACCCACAGAAG___AGGAAAGAGCACAGAGACCACGACTCCAGCTTAAACCTCGAACAGTCGCGACGCCCCTCAATCAAGTAGCCAATCCCAACTCTGCTATCTTCGGGGGTGCCAGGCCTAGAGAGGAAGTCG MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPw|lqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4265 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 374 TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:727210:- chr7:588834-767287:- chr7:766847:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36331079:- chr7:36363761-36429734:- chr7:36370688:- chr7:715434 chr7:36332606 NA NA chr7:755071 chr7:36372215 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1704)(32%) |DUF1704(14%) 0 37 2 163 498 ENST00000537384.6 ENST00000297063.10 upstream downstream duplicates(6),mismatches(1) CGGCGCACGGCGGCGAAGGGGTCGAGCAGGGAGCAGCGCAGCGCGCGCAGAGCGTCGTCCAG|GGTGTTTTAGTAAAGACCAGGTATACTTGGATGGAATTCTTCAAATCCTCCGATACAGAGATACCATAGACTTCCATCTGCTGACTGCTCTCGGGAAG___GTTTCTTATGAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCATTTCCTGCAGGACCATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACTGACAGGGAACTGAAAGATCTTATATAGTAATTAGCGTTCTGGCAAACATAGCTAAGCTATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4266 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:716389:- chr7:588834-767287:- chr7:756026:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36331079:- chr7:36363761-36429734:- chr7:36370688:- chr7:715434 chr7:36332606 NA NA chr7:755071 chr7:36372215 NA NA sense sense unknown intron CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1704)(32%) |DUF1704(14%) 4 3 7 14 498 ENST00000478198.1 ENST00000297063.10 upstream downstream duplicates(1),mismatches(2) CAAGGAGCACGTGGCAGCGCAGGAAACAG___CTCAGGGAGCATACGGACGTTGCGCAGTGAATGCAGCTGGCTGGGGAAGGCTCAGGAACCGCACCCAGGAAGCCCACCTACAGATCCCACCTCAAACCACGACATGCTGCAGCCTCCCCAGTGGCCAGAGCAGCTTAACAAAGCATCTTTGTTTCCTTTCTGCACCCC...TAAGAGCTACCAAGGAGAAGTCCTGGGAGCCCtGGGCCCTCCAGAGGCAGTGCTGGCGCCTTAGGGAATTTCCCTGTGTAACGTTTTGGTTGAATCTTGGAGGGTGAATTGGAGCTGACAGAGCAAAGTTTAGAAGTGCGAG|GGTGTTTTAGTAAAGACCAGGTATACTTGGATGGAATTCTTCAAATCCTCCGATACAGAGATACCATAGACTTCCATCTGCTGACTGCTCTCGGGAAG___GTTTCTTATGAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCATTTCCTGCAGGACCATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACTGACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4267 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 375 TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:727590:- chr7:588834-767287:- chr7:767227:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36331079:- chr7:36363761-36429734:- chr7:36370688:- chr7:715434 chr7:36332606 NA NA chr7:755071 chr7:36372215 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Domain_of_unknown_function_(DUF1704)(32%) |DUF1704(14%) 0 20 0 57 498 ENST00000403562.5 ENST00000297063.10 upstream downstream duplicates(2),mismatches(1) CAGGAACAGGGGTCACGGGGCAAGGAGCACGTGGCAGCGCAGGAAACAG|GGTGTTTTAGTAAAGACCAGGTATACTTGGATGGAATTCTTCAAATCCTCCGATACAGAGATACCATAGACTTCCATCTGCTGACTGCTCTCGGGAAG___GTTTCTTATGAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCATTTCCTGCAGGACCATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACTGACAGGGAACTGAAAGATCTTATATAGTAATTAGCGTTCTGGCAAACATAGCTAAGCTATGCCTCCATGTATATTACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4268 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:727590:- chr7:588834-767287:- chr7:767227:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36326918:- chr7:36363761-36429734:- chr7:36366527:- chr7:599442,chr7:715434 chr7:36328914,chr7:36332606 NA NA chr7:639079,chr7:755071 chr7:36368523,chr7:36372215 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Domain_of_unknown_function_(DUF1704)(18%) |DUF1704(0%) 0 1 0 57 475 ENST00000403562.5 ENST00000297063.10 upstream downstream none CAAGGAGCACGTGGCAGCGCAGGAAACAG|GTTTCTTATGAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCATTTCCTGCAGGACCATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4269 GNPTG::ENSG00000260132 ENSG00000090581.11::ENSG00000260132.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 722 TRUE 263 GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1352306:+ chr16:1401932-1415738:+ chr16:1402307:+ ENSG00000260132 ENSG00000260132.1 lncRNA + + chr16:1408834-1412248:+ chr16:1411929:+ chr16:1458835-1462249:+ chr16:1461930:+ chr16:1357890,chr16:1357889 chr16:1410639,chr16:1410635 NA NA chr16:1407891,chr16:1407890 chr16:1460640,chr16:1460636 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through high none none none 13 9 15 320 40 ENST00000527168.6 ENST00000568554.1 downstream upstream duplicates(4),inconsistently_clipped(1),mismatches(11) GCGCGATGGCGGCGGGGCTGGCGCGGCTCCTGTTGCTCCTCGGGCTCTCGGCCGGCG___GGCCCGCGCCGGCAGGTGCAGCGAAGATGAAGGTGGTGGAGGAGCCCAACGCGTTTGGG...GCAGCCTCGCGGGCTGGCG...TGCCGCTTCCCGTAGGGTGAACAACCCGTTCTTGCCTCAGGCCAGTCGCCTCCAGGCCAAGAGGGATCCTTCACCCGTGTCTG|GCTAAGCACTGTTGAAAAAATAAAGGAAAACAGACTTCACAAGGATCTCCGTGCTGAAAGCAGCCTTCAACAGGAAGGTCCCTGGAGAATCAGCTCCTTCCAAAAGATCAGGGGATGAAGACTTCAAGACCGCAACTGCTGCTGTCTCACCCCTAGGCAGGAATGGACCACCCTCCGCCCTCCACCCTCCGCCAGCAGCCCACAGGAAGCAAGTAGAACCTGATACCACCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4271 GNPTG::ENSG00000260132 ENSG00000090581.11::ENSG00000260132.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 722 TRUE 263 GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1352159:+ chr16:1401932-1415738:+ chr16:1402160:+ ENSG00000260132 ENSG00000260132.1 lncRNA + + chr16:1408834-1412248:+ chr16:1411929:+ chr16:1458835-1462249:+ chr16:1461930:+ chr16:1357890,chr16:1357889 chr16:1410639,chr16:1410635 NA NA chr16:1407891,chr16:1407890 chr16:1460640,chr16:1460636 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 1 0 6 382 40 ENST00000683366.1 ENST00000568554.1 downstream upstream mismatches(4) GCGCGATGGCGGCGGGGCTGGCGCGGCTCCTGTTGCTCCTCGGGCTCTCGGCCGGCG___GGCCCGCGCCGGCAGGTGCAGCGAAGATGAAGGTGGTGGAGGAGCCCAACGCGTTTGG|GCTAAGCACTGTTGAAAAAATAAAGGAAAACAGACTTCACAAGGATCTCCGTGCTGAAAGCAGCCTTCAACAGGAAGGTCCCTGGAGAATCAGCTCCTTCCAAAAGATCAGGGGATGAAGACTTCAAGACCGCAACTGCTGCTGTCTCACCCCTAGGCAGGAATGGACCACCCTCCGCCCTCCACCCTCCGCCAGCAGCCCACAGGAAGCAAGTAGAACCTGATACCACCT MAAGLARLLLLLGLSAGGPAPAGAAKMKVVEEPNAFg|lstvekikenrlhkdlraesslqqegpwrissfqkirg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4272 GNPTG::ENSG00000260132 ENSG00000090581.11::ENSG00000260132.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 722 TRUE 263 GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1352017:+ chr16:1401932-1415738:+ chr16:1402018:+ ENSG00000260132 ENSG00000260132.1 lncRNA + + chr16:1408834-1412248:+ chr16:1411929:+ chr16:1458835-1462249:+ chr16:1461930:+ chr16:1357890,chr16:1357889 chr16:1410639,chr16:1410635 NA NA chr16:1407891,chr16:1407890 chr16:1460640,chr16:1460636 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 1 4 1 317 40 ENST00000683366.1 ENST00000568554.1 downstream upstream duplicates(1) GGCGGCCGCTGCGGCGCGATGGCGGCGGGGCTGGCGCGGCTCCTGTTGCTCCTCGGGCTCTCGGCCGGCG|GCTAAGCACTGTTGAAAAAATAAAGGAAAACAGACTTCACAAGGATCTCCGTGCTGAAAGCAGCCTTCAACAGGAAGGTCCCTGGAGAATCAGCTCCTTCCAAAAGATCAGGGGATGAAGACTTCAAG...CGCAACTGCTGCTGTCTCACCCCTAGGCAGGAATGGACCACCCTCCGCCCTCCACCCTCCGCCAGCAGCCCACAGGAAGCAAGTAGAACCTGATACCACCTCCC MAAGLARLLLLLGLSAG|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4280 SLC25A24::CCDC144BP ENSG00000085491.17::ENSG00000291090.1 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A24 ENSG00000085491.17 protein_coding - - chr1:108134043-108200849:- chr1:108181941:- chr1:108676665-108743471:- chr1:108724563:- CCDC144BP ENSG00000291090.1 lncRNA - - chr17:18537800-18625653:- chr17:18582786:- chr17:18441114-18528966:- chr17:18486100:- chr1:108179921,chr1:108179925 chr17:18583088,chr17:18583089 NA NA chr1:108722543,chr1:108722547 chr17:18486402,chr17:18486403 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none EF-hand_domain_pair(92%),EF_hand(100%)| EF-hand_1(100%),EF-hand_4(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(69%),EF-hand_8(100%)| 1 0 5 61 4 ENST00000565488.6 ENST00000618081.6 upstream downstream none TGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG___GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG|GTTGTGCAGGAGAGAAACGATGCCCAGAAGCAACTTTCTGAAGAACAGGATGCCAGAATATTACAAGATCAGATTCTGACAAGTAAACAAAAGGAACTAGAAA GKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQr|lcrretmprsnflknrmpeyykirf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4281 SLC25A24::CCDC144BP ENSG00000085491.17::ENSG00000154874.18 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A24 ENSG00000085491.17 protein_coding - - chr1:108134043-108200849:- chr1:108181941:- chr1:108676665-108743471:- chr1:108724563:- CCDC144BP ENSG00000154874.18 transcribed_unprocessed_pseudogene - - chr17:18542155-18625447:- chr17:18582786:- chr17:18445469-18528760:- chr17:18486100:- chr1:108179921,chr1:108179925 chr17:18583088,chr17:18583089 NA NA chr1:108722543,chr1:108722547 chr17:18486402,chr17:18486403 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none EF-hand_domain_pair(92%),EF_hand(100%)| EF-hand_1(100%),EF-hand_4(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(69%),EF-hand_8(100%)| 1 0 5 61 4 ENST00000565488.6 ENST00000285176.13 upstream downstream none TGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG___GAAAAATTGAGGCTTCAGAAATTGTCCAGTCTCTCCAGACACTGGGTCTGACTATTTCTGAACAACAAGCAGAGTTGATTCTTCAAAG|GTTGTGCAGGAGAGAAACGATGCCCAGAAGCAACTTTCTGAAGAACAGGATGCCAGAATATTACAAGATCAGATTCTGACAAGTAAACAAAAGGAACTAGAAA GKLDFEEFMKYLKDHEKKMKLAFKSLDKNNDGKIEASEIVQSLQTLGLTISEQQAELILQr|lcrretmprsnflknrmpeyykirf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4282 CABLES2::MIR646HG ENSG00000149679.12::ENSG00000228340.8 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CABLES2 ENSG00000149679.12 protein_coding - - chr20:62388634-62407285:- chr20:62406915:- chr20:60963690-60982341:- chr20:60981971:- MIR646HG ENSG00000228340.8 lncRNA + - chr20:60087661-60653784:+ chr20:60117765:- chr20:58662716-59228842:+ chr20:58692821:- chr20:62402552,chr20:62402554 chr20:60121629,chr20:60121628 NA NA chr20:60977608,chr20:60977610 chr20:58696685,chr20:58696684 NA NA sense antisense out-of-frame CDS/splice-site exon deletion/5'-5' high none none none 0 5 1 33 9 ENST00000279101.10 unknown upstream downstream none CGCCGCCGCCGCCGGAGCCCCCCACCGGGCTGCCCGCCAGGACCCCCGCGCCCCAGGGCCTGCTCAGCCCCACGCAGGTGCCCACCGGCCTCGGCCTGGATGGGCAGCGCCAGAG|AAATCGTATTTGGAATCTCAAACTATAAGAGATAGAAGACGAAAG___...ATTCAAATAGG...___TCATACGTCCCCTAACGACTGGGATACCTTCTGAGAAATGCA PPPPEPPTGLPARTPAPQGLLSPTQVPTGLGLDGQRQr|nriwnlkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4292 SIPA1L3::SPINT2 ENSG00000105738.11::ENSG00000167642.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 378 FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ SPINT2 ENSG00000167642.13 protein_coding + + chr19:38244035-38292615:+ chr19:38283627:+ chr19:38734675-38783255:+ chr19:38774267:+ chr19:37915723,chr19:37915719 chr19:38251260,chr19:38251253 NA NA chr19:38406363,chr19:38406359 chr19:38741900,chr19:38741893 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%) |Kunitz_BPTI(100%) 2 18 8 79 14148 ENST00000222345.11 ENST00000301244.12 downstream upstream duplicates(1) GCGCGAAGCGGCTTGGAAGTGGGCAGCCTGGAAGTCACTCGGGCCACCGGAGCTGGCGGCGTCTCCAGCGAGCGGCGCGGAGCTGGACGCCGCGATCGTGGGGCCCGCGAGGCGGGCAGCCGGGGCGTCCAG|ACTTCTGCCTGGTGTCGAAGGTGGTGGGCAGATGCCGGGCCTCCATGCCTAGGTGGTGGTACAATGTCACTGACGGATCCTGCCAGCTGTTTGTGTATGGGGGCTGTGACGGAAACAGCAATAATTACCTGACCAAGGAGGAGTGCCTCAAGAAATGTGCCACTGTCACAG___AGAATGCCACGGGTGACCTGGCCACCAGCAGGAATGCAGCGGATTCCTCTGTCCCAAGTG___CTCCCAGAAGGCAGGATTCTGAAGACCACTCCAGCGATATGTTCAACTATGAAG___AATACTGCACCGCCAACGCAGTCACTGGGCCTTGCCGTGC...CTGGTACTTTGACGTGGAGAGGAACTCCTGCAATAACTTCATCTATGGAGGCTGCCGGGGCAATAAGAACAGCTACCGCTCTGAGGAGGCCTGCATGCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4296 NDUFA12::FGD6 ENSG00000184752.14::ENSG00000180263.14 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NDUFA12 ENSG00000184752.14 protein_coding - - chr12:94895297-95003748:- chr12:95002739:- chr12:95289073-95397524:- chr12:95396515:- FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95113701:- chr12:95470525-95611258:- chr12:95507477:- chr12:94994561,chr12:94994567 chr12:95131943,chr12:95131946 NA NA chr12:95388337,chr12:95388343 chr12:95525719,chr12:95525722 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none NADH_ubiquinone_oxidoreductase_subunit_NDUFA12(20%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(16%) NDUFA12(0%)|FYVE(100%),PH(100%),RhoGEF(11%) 2 2 4 1562 78 ENST00000552205.6 ENST00000343958.9 upstream downstream duplicates(1) GGCAAGATGGAGTTAGTGCAGGTCCTGAAACGCGGGCTGCAGCAGATCACCGGCCACGGCGGTCTCCGAGGCTATCTACGGGTTTTTTTCAG___GACAAATGATGCGAAGGTTGGTACATTAGTGGGGGAAGACAAATATGGAAACAAATACTATGAAGACAACAAGCAATTTTTTG|ATTATTTGAAGAATCTCATAGAAGATGCTGGAGATTACAGAGACACTCAAG___ATGCCCTTGCTGTTGTTATAGAGGTAGCCAACCACGCCAATGACACCATGAAGCAAGGA___GACAAC...CAGggCTGCCACAGAAAGGGATGAATGGCTAGAAGCGATTTCCAGGGCAATAGAAGAGTATGCCAAGAAAAGAATCgCCTTCTGTCCTAGTAGGAGTCTT MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFF|dYLKNLIEDAGDYRDTQDALAVVIEVANHANDTMKQGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4298 PPP2CB::RBPMS ENSG00000104695.13::ENSG00000157110.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30812320:- chr8:30631973-30671830:- chr8:30669836:- RBPMS ENSG00000157110.16 protein_coding + - chr8:30384511-30572256:+ chr8:30397965:- chr8:30242027-30429773:+ chr8:30255481:- chr8:30807436,chr8:30807440 chr8:30403862,chr8:30403863 NA NA chr8:30664952,chr8:30664956 chr8:30261378,chr8:30261379 NA NA sense antisense out-of-frame CDS/splice-site exon deletion/5'-5' medium none none none 1 1 2 899 3 ENST00000221138.9 unknown upstream downstream none GCGGCGGCCGGGCTGGGGCTCGGGATCCGCATCGGGATCGGGCCGCCATGGACGACAAGGCGTTCACCAAGGAGCTGGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTGCGAGAAG|GGGACTTGAAGCCACGCACTCCTGAAGAACCACCACCTAGGCTCCCAGGGTCTTTTCTGCACTTCTTTGGATCTCACA___GCAAATTGAGGAAGGTATATTGAGCTGGAGGCTAGATCCAATCAAAGGATCAGAAGTG___GTTTGGCTGTGCTCAACTCAAC...GCAGAGCTGGGGGTCCGTACGGAGGAACTTCAGAGGCTGGAAGCACGCTTGAAAAAGAAAGGGGGC MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEK|gt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4308 ZNRF2::ABCB5 ENSG00000180233.11::ENSG00000004846.17 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNRF2 ENSG00000180233.11 protein_coding + + chr7:30284597-30367689:+ chr7:30285826:+ chr7:30324213-30407305:+ chr7:30325442:+ ABCB5 ENSG00000004846.17 protein_coding + - chr7:20615667-20777038:+ chr7:20642178:- chr7:20655290-20816658:+ chr7:20681801:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none none none 0 2 0 48 5 ENST00000323037.5 unknown downstream downstream none CGGCTCCTTACCAGCTCACCTCTCGCCGCACATGTTTGGAG|GAGAAGCAGAAGATCTTTGGAAGATCTGAGCATGGGATGGCATTATCTGTTCAACTTTTTAAAAGACCACTCCAGCTTCTCTGTGGAGAACGGATGAAAGCAGAAATAATGGAAGCAGGAAGTTCTGTTAAGAACCTATCGCCC GSLPAHLSPHMFG|geaedlwki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4314 L3MBTL4::ENSG00000264449 ENSG00000154655.16::ENSG00000264449.6 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA L3MBTL4 ENSG00000154655.16 protein_coding - - chr18:5954706-6415237:- chr18:6263947:- chr18:5954705-6415236:- chr18:6263946:- ENSG00000264449 ENSG00000264449.6 lncRNA + - chr18:5887487-5989369:+ chr18:5900786:- chr18:5887486-5989368:+ chr18:5900785:- chr18:6260562,chr18:6260567 chr18:5905123,chr18:5905122 NA NA chr18:6260561,chr18:6260566 chr18:5905122,chr18:5905121 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 4 3 9 5 ENST00000317931.12 unknown upstream downstream none CAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAG|GAATACTTTCAAGTGATCGACTCCTTTTCAGCTTTCAGTTCTCAGTGGAATGACACTTCTTGGAGAAGCCTTCCCTGAATTCCCAATCTAAATTGTTCTCTCTTGCTGCCCGTGTGACCAGTCACAGCAACCTCTTTTAATTTCTTCGTACCGCTCACCAAGATTTGAAATTTTC QKAVAAPVELFSK|eyfqvidsfsafssqwndtswrslp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4317 chr18:6374361-6374425:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4315 L3MBTL4::ENSG00000266846 ENSG00000154655.16::ENSG00000266846.2 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA L3MBTL4 ENSG00000154655.16 protein_coding - - chr18:5954706-6415237:- chr18:6263947:- chr18:5954705-6415236:- chr18:6263946:- ENSG00000266846 ENSG00000266846.2 lncRNA + - chr18:5895745-6108382:+ chr18:5900786:- chr18:5895744-6108381:+ chr18:5900785:- chr18:6260562,chr18:6260567 chr18:5905123,chr18:5905122 NA NA chr18:6260561,chr18:6260566 chr18:5905122,chr18:5905121 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 4 3 9 5 ENST00000317931.12 unknown upstream downstream none CAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAG|GAATACTTTCAAGTGATCGACTCCTTTTCAGCTTTCAGTTCTCAGTGGAATGACACTTCTTGGAGAAGCCTTCCCTGAATTCCCAATCTAAATTGTTCTCTCTTGCTGCCCGTGTGACCAGTCACAGCAACCTCTTTTAATTTCTTCGTACCGCTCACCAAGATTTGAAATTTTC QKAVAAPVELFSK|eyfqvidsfsafssqwndtswrslp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4317 chr18:6374361-6374425:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4318 RAPGEF5::HDAC9 ENSG00000136237.20::ENSG00000048052.25 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAPGEF5 ENSG00000136237.20 protein_coding - - chr7:22118236-22357154:- chr7:22119413:- chr7:22157854-22396773:- chr7:22159031:- HDAC9 ENSG00000048052.25 protein_coding + + chr7:18086949-19002416:+ chr7:18424760:+ chr7:18126572-19042039:+ chr7:18464383:+ chr7:22119178 chr7:18424732 NA NA chr7:22158796 chr7:18464355 NA NA sense sense unknown 3'UTR intron inversion low none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%),RasGEF_N-terminal_motif(100%),RasGEF_domain(100%)|Glutamine_rich_N_terminal_domain_of_histone_deacetylase_4(100%),Histone_deacetylase_domain(100%) DEP(100%),RasGEF(100%),RasGEF_N(100%)|HDAC4_Gln(100%),Hist_deacetyl(100%) 0 0 3 9 2 ENST00000665637.1 unknown upstream upstream none ATTTTtTTTTACATACACATTTGCAGGTGTTCCCTAGAGTGTGGTGTTTTGAATTTGCTCTTTGTCATCTGTATAATTGCCAAATGATTATAGTGATACAC...|...AATCAGCTGGGCGTGATGGCACGTGCCCAGCTACTCTGGAGGCTGAGGGAGGAGAATCACTTGAATCCAGACAGTGGAGTTTGCAGTGAGCCAAGATATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4320 SDK1::GRB10 ENSG00000146555.20::ENSG00000106070.20 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SDK1 ENSG00000146555.20 protein_coding + + chr7:3301252-4269000:+ chr7:3301884:+ chr7:3340884-4308632:+ chr7:3341516:+ GRB10 ENSG00000106070.20 protein_coding - - chr7:50590063-50793462:- chr7:50703908:- chr7:50657760-50861159:- chr7:50771605:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |BPS_(Between_PH_and_SH2)_(100%),PH_domain(100%),Ras_association_(RalGDS/AF-6)_domain(100%),SH2_domain(100%) |BPS(100%),PH(100%),RA(100%),SH2(100%) 0 1 1 21 8 ENST00000404826.7 ENST00000401949.6 downstream downstream none CGGGCGGCGGGCGGCAAAGTTGGGGCCGGGCCGCCGCGGCTGGTGGGCGCTGCTGGCGCTGCAGCTGCACTTGCTCCGGGCGCTGGCGCAAG|GACAAGGTGGAGCAGACACCTCGCAGTCAACAAGA...ACCAGG___AGGATGATGTGGACCTGGAAGCCCTGGTGAACGATATGAATGCATCCCTGGAGAGCCTGTACTCGGCCTGCAGCATGCAGTCAGACACGGTGCCC...ACGCCGGGTTCTTTACCTCCGAGCCAGGCCGCCGCAAAGCAG___GATGTTAAAGTCTTTAGTGAAGATGGGACAAGCAAAGTGGTGGAGATTCTAGCAGACAT GRRAAKLGPGRRGWWALLALQLHLLRALAQ|gqggadtsqst NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4325 ANKMY2::BZW2 ENSG00000106524.9::ENSG00000136261.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKMY2 ENSG00000106524.9 protein_coding - - chr7:16599779-16645817:- chr7:16645507:- chr7:16639404-16685442:- chr7:16685132:- BZW2 ENSG00000136261.16 protein_coding + + chr7:16646131-16706523:+ chr7:16665437:+ chr7:16685756-16746148:+ chr7:16705062:+ chr7:16642706,chr7:16642706,chr7:16642706,chr7:16642706,chr7:16642706 chr7:16648933,chr7:16648925,chr7:16648968,chr7:16648964,chr7:16648942 NA NA chr7:16682331,chr7:16682331,chr7:16682331,chr7:16682331,chr7:16682331 chr7:16688558,chr7:16688550,chr7:16688593,chr7:16688589,chr7:16688567 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none |eIF4-gamma/eIF5/eIF2-epsilon(100%) |W2(100%) 0 2 0 259 1491 ENST00000306999.7 ENST00000630952.2 upstream upstream none GGGAGCAATGGTTCACATAAAGAAAGGCGAGCTGACCCAGGAGGAGAAGGAGCTACTGGAAGTCATCGGGAAAG|AAATTTTATGAATAAGCATCAGAAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCGGAAAAGGG___ATGAAAAAGAGAAATTCGAACCCACAGTCTTCAGGGATACACTTG...ATCAGGAGATATAAGTATTTGGAGAAGGCATTTGAAGATGAAATGAAA?AG___CTTCTCCTCTTCCTTAAAGCCTTTTCCGAAACAGAGCAGACAAAGTTGGC MVHIKKGELTQEEKELLEVIGK|eil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4326 ANK2::SCFD1 ENSG00000145362.21::ENSG00000092108.22 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ANK2 ENSG00000145362.21 protein_coding + + chr4:112818032-113384221:+ chr4:113199109:+ chr4:113739188-114305377:+ chr4:114120265:+ SCFD1 ENSG00000092108.22 protein_coding + + chr14:30622291-30737694:+ chr14:30674984:+ chr14:31091497-31206900:+ chr14:31144190:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Ankyrin_repeats_(3_copies)(10%)|Sec1_family(42%) Ank(12%),Ank_2(16%),Ank_3(18%),Ank_4(12%),Ank_5(3%)|Sec1(57%) 0 1 0 4 372 ENST00000672955.1 ENST00000678124.1 downstream upstream none CAAAGTTCTTGTTAAGGAAGGAGCCAATATTAATGCACAGTCTCAG|TTCTTTGCCAGAACTCCTTGAGAAAAAAAGACTTATTGATCTCCATACAAATGTTGCCACTGCTGTTTTAGAACATA KVLVKEGANINAQSQ|ffartp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1243,hsa-mir-8082 chr4:113106863-113106955:+,chr4:113152282-113152362:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4327 SCFD1::ANK2 ENSG00000092108.22::ENSG00000145362.21 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCFD1 ENSG00000092108.22 protein_coding + + chr14:30622291-30737694:+ chr14:30675065:+ chr14:31091497-31206900:+ chr14:31144271:+ ANK2 ENSG00000145362.21 protein_coding + + chr4:112818032-113384221:+ chr4:113232161:+ chr4:113739188-114305377:+ chr4:114153317:+ chr14:30675396,chr14:30675402,chr14:30675415 chr4:113218203,chr4:113218203,chr4:113218203 NA NA chr14:31144602,chr14:31144608,chr14:31144621 chr4:114139359,chr4:114139359,chr4:114139359 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Sec1_family(62%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(89%),Ankyrin_repeats_(many_copies)(100%),Death_domain(100%),UPA_domain(100%),ZU5_domain(100%) Sec1(42%)|Ank(87%),Ank_2(7%),Ank_3(81%),Ank_4(27%),Ank_5(3%),Death(100%),UPA_2(100%),ZU5(100%) 0 1 0 275 5 ENST00000678124.1 ENST00000672955.1 downstream upstream none CTTTGCCAGAACTCCTTGAGAAAAAAAGACTTATTGATCTCCATACAAATGTTGCCACTGCTGTTTTAGAACATATAAAG|AATGGCTTTACTCCTTTATAC...ATGGAGCTAATCAGAGCACTGCTACAGAG___GATGGCTTTACTCCTCTAGCTGTGGCACTCCAGCAAGGACACAACCAGGCGGTGGCCATCCTCTTGGAGAAT LPELLEKKRLIDLHTNVATAVLEHIK|NGFTPL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4334 CREB3L2::PTN ENSG00000182158.16::ENSG00000105894.13 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 379 TRUE 730 TRUE 264 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- PTN ENSG00000105894.13 protein_coding - - chr7:137227341-137343774:- chr7:137254967:- chr7:136912088-137028520:- chr7:136939714:- chr7:137954059,chr7:137954067 chr7:137292412,chr7:137292418 NA NA chr7:137638805,chr7:137638813 chr7:136977159,chr7:136977165 NA NA sense sense in-frame CDS/splice-site CDS deletion high none |PTN/MK_heparin-binding_protein_family__C-terminal_domain(100%),PTN/MK_heparin-binding_protein_family__N-terminal_domain(100%) |PTN_MK_C(100%),PTN_MK_N(100%) 36 133 100 233 301 ENST00000330387.11 ENST00000393083.2 upstream downstream duplicates(15),mismatches(14) GAGCAGACGTTTGCTTTCCAAGTGCAAAACTACAGACACGCGCGCGCACACACGCAAGCACACGCGGAGAGAGAGGAACCTTGCCGGTCCGAGGCAGCTCTGCGCGTCCCCTCCTGCGCTTAGCATCCTCGGCCCAGCGCGGCCCGCACCGCCATGGAGGTGCTGGAGAGCGGGGAGCAGGGCGTGCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGGGACGGCGAGGCCCTCATGTACCACACG|GCTCAACAGTACCAGCAGCAGCGTCGAAAATTTGCAGCTGCCTTCTTGGCATTCATTTTCATACTGGCAGCTGTGGATACTGCTGAAGCAGGGAAGAAAGAGAAACCAG___AAAAAAAAGTGAAGAAGTCTGACTGTGGAGAATGGCAGTGGAGTGTGTGTGTGCCCACCAGTGGAGACTGTGGGCTGGGCACACGGGAGGGCACTCGGACTGGAGCTGAGTGCAAGC MEVLESGEQGVLQWDRKLSELSEPGDGEALMYHT|AQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4335 CREB3L2::PTN ENSG00000182158.16::ENSG00000105894.13 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 730 TRUE 264 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- PTN ENSG00000105894.13 protein_coding - - chr7:137227341-137343774:- chr7:137254974:- chr7:136912088-137028520:- chr7:136939721:- chr7:137954059,chr7:137954067 chr7:137292412,chr7:137292418 NA NA chr7:137638805,chr7:137638813 chr7:136977159,chr7:136977165 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |PTN/MK_heparin-binding_protein_family__C-terminal_domain(100%),PTN/MK_heparin-binding_protein_family__N-terminal_domain(100%) |PTN_MK_C(100%),PTN_MK_N(100%) 2 22 101 233 301 ENST00000330387.11 ENST00000393083.2 upstream downstream duplicates(6),mismatches(7) CGCTTGGCCATCCTCTCTCCGGCAGAGGAGCAGACGTTTGCTTTCCAAGTGCAAAACTACAGACACGCGCGCGCACACACGCAAGCACACGCGGAGAGAGAGGAACCTTGCCGGTCCGAGGCAGCTCTGCGCGTCCCCTCCTGCGCTTAGCATCCTCGGCCCAGCGCGGCCCGCACCGCCATGGAGGTGCTGGAGAGCGGGGAGCAGGGCGTGCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGGGACGGCGAGGCCCTCATGTACCACACG|AATGCAGGCTCAACAGTACCAGCAGCAGCGTCGAAAATTTGCAGCTGCCTTCTTGGCATTCATTTTCATACTGGCAGCTGTGGATACTGCTGAAGCAGGGAAGAAAGAGAAACCAG___AAAAAAAAGTGAAGAAGTCTGACTGTGGAGAATGGCAGTGGAGTGTGTGTGTGCCCACCAGTGGAGACTGTGGGCTGGGCACACGGGAGG MEVLESGEQGVLQWDRKLSELSEPGDGEALMYHT|nagstvpaaaskicscllgihfhtgscgyc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4336 CREB3L2::PTN ENSG00000182158.16::ENSG00000105894.13 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 730 TRUE 264 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- PTN ENSG00000105894.13 protein_coding - - chr7:137227341-137343774:- chr7:137228075:- chr7:136912088-137028520:- chr7:136912822:- chr7:137954059,chr7:137954067 chr7:137292412,chr7:137292418 NA NA chr7:137638805,chr7:137638813 chr7:136977159,chr7:136977165 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |PTN/MK_heparin-binding_protein_family__C-terminal_domain(11%) |PTN_MK_C(0%) 1 0 1 233 437 ENST00000330387.11 ENST00000348225.7 upstream downstream none GGCAGCTCTGCGCGTCCCCTCCTGCGCTTAGCATCCTCGGCCCAGCGCGGCCCGCACCGCCATGGAGGTGCTGGAGAGCGGGGAGCAGGGCGTGCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGGGACGGCGAGGCCCTCATGTACCACACG|CAGAATCTAAGAAGAAGAAAAAGGAAGGCAAG...GCTAAGTACACAATAAGCAAAAACAAAAAGAAAAGAAAATTTTTGTAGTAGCGTTTTTTAAATGTATACTATAGTACCAGTAGGGGCTTATAATAAAGGA MEVLESGEQGVLQWDRKLSELSEPGDGEALMYHT|qnlrrrkrka NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 4337 VGLL4::PRKG1 ENSG00000144560.16::ENSG00000185532.20 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 380 TRUE 731 TRUE 265 VGLL4 ENSG00000144560.16 protein_coding - - chr3:11556069-11771350:- chr3:11643437:- chr3:11597543-11812824:- chr3:11684911:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:51467723:+ chr10:52750648-54058183:+ chr10:53227483:+ chr3:11621668,chr3:11621670 chr10:51318896,chr10:51318894 NA NA chr3:11663142,chr3:11663144 chr10:53078656,chr10:53078654 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Transcription_cofactor_vestigial-like_protein_4(15%)|Cyclic_nucleotide-binding_domain(86%),Protein_kinase_domain(100%) VGLL4(41%)|CSTF2_hinge(100%),CSTF_C(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RRM_1(100%),cNMP_binding(52%) 15 14 26 112 134 ENST00000430365.7 ENST00000401604.8 upstream upstream duplicates(7),mismappers(1),mismatches(3) TTTTTTT?-AACTTTTGCATACTTTGTTTTGATAGTCTGAGGCTGGGCCTCTGCCTTTGTGAAGTTGAAGAGCCAGGAGCTACTCAGCAACAATTGATTTTTGAAACTTAACTCTTTTGGGGCAAAAGCAAAGAGCTGGTTTTCTTTGCTAGCCCAATAAATGCTATTTATGAAGATGGACCTGTTGAACTATCAGTACTTGGACAAGATGAACAACAATATCGGCATTCTGTGCTACGAAG|ATGGTAAGGTTGAAGTTACAAAAGAAGGTGTGAAGTTGTGTACCATGGGTCCAGGAAAAGTGTTTGGGGAATTGGCTATTCTTTACAACTGTACCCGGACAGCGACCGTCAAGA___CTCTTGTAAATGTAAAACTCTGGGCCATTGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTATAT MLFMKMDLLNYQYLDKMNNNIGILCYE|dGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE cGMP-dependent protein kinase AGC PKG Q13976 TRUE Uterus_corpus inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4338 VGLL4::PRKG1 ENSG00000144560.16::ENSG00000185532.20 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 731 TRUE 265 VGLL4 ENSG00000144560.16 protein_coding - - chr3:11556069-11771350:- chr3:11643437:- chr3:11597543-11812824:- chr3:11684911:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:51804585:+ chr10:52750648-54058183:+ chr10:53564345:+ chr3:11621668,chr3:11621670 chr10:51318896,chr10:51318894 NA NA chr3:11663142,chr3:11663144 chr10:53078656,chr10:53078654 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Transcription_cofactor_vestigial-like_protein_4(15%)|Cyclic_nucleotide-binding_domain(63%),Protein_kinase_domain(100%) VGLL4(41%)|Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),cNMP_binding(2%) 1 0 10 112 140 ENST00000430365.7 ENST00000401604.8 upstream upstream none CTCcTTTCCATTTCCAGGAAGGACTTGTAAGGACTTCTGAAACGCTGTTTTCATACTCGATCGGGGATACAGTACATACACCGTCTACCAGTAAGCCCTTG...TTTTGATAGTCTGAGGCTGGGCCTCTGCCTTTGTGAAGTTGAAGAGCCAGGAGCTACTCAGCAACAATTGATTTTTGAAACTTAACTCTTTTGGGGCAAAAGCAAAGAGCTGGTTTTCTTTGCTAGCCCAATAAATGCTATTTATGAAGATGGACCTGTTGAACTATCAGTACTTGGACAAGATGAACAACAATATCGGCATTCTGTGCTACGAAG|CTCTTGTAAATGTAAAACTCTGGGCCATTGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTATATGGAATTTTTAAAAAG___CGTTCCAACATTCCAGAGCCTTCCTGAAGAGATCCTCAGCAAGCTTGCTGATGTCCTTGAAGAG___ACCCACTATGAAAATGGAG MLFMKMDLLNYQYLDKMNNNIGILCYE|aLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE cGMP-dependent protein kinase AGC PKG Q13976 TRUE Uterus_corpus inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4339 VGLL4::PRKG1 ENSG00000144560.16::ENSG00000185532.20 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 731 TRUE 265 VGLL4 ENSG00000144560.16 protein_coding - - chr3:11556069-11771350:- chr3:11702971:- chr3:11597543-11812824:- chr3:11744445:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:51467723:+ chr10:52750648-54058183:+ chr10:53227483:+ chr3:11621668,chr3:11621670 chr10:51318896,chr10:51318894 NA NA chr3:11663142,chr3:11663144 chr10:53078656,chr10:53078654 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Transcription_cofactor_vestigial-like_protein_4(6%)|Cyclic_nucleotide-binding_domain(86%),Protein_kinase_domain(100%) VGLL4(0%)|CSTF2_hinge(100%),CSTF_C(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RRM_1(100%),cNMP_binding(52%) 1 0 1 6 134 ENST00000418000.5 ENST00000401604.8 upstream upstream none CCGCCCCTGGGTCCCCCGCAGGGCCAGGCCGGCCCCAGGCGGGCGCGCCCAGAGCCGCCGGGCG___GCTCCAACCAGGAATGGAGACGCCATTGGATGTTTTGTCCAGGGCAGCATCTCTGGTGCATGCTGATGACGAAAAAC|ATGGTAAGGTTGAAGTTACAAAAGAAGGTGTGAAGTTGTG...AAGTGTTTGGGGAATTGGCTATTCTTTACAACTGTACCCGGACAGCGACCGTCAAGA___CTCTTGTAAATGTAAAACTCTGGGCCATTGATCGACAATGTTTT METPLDVLSRAASLVHADDEK|hGKVEVTKEGVKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE cGMP-dependent protein kinase AGC PKG Q13976 TRUE Uterus_corpus inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4392 OSBPL5::GRHL2 ENSG00000021762.20::ENSG00000083307.12 HS294T SRR8615414 SRR8652115 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL5 ENSG00000021762.20 protein_coding - - chr11:3087107-3166739:- chr11:3165216:- chr11:3108337-3187969:- chr11:3186446:- GRHL2 ENSG00000083307.12 protein_coding + + chr8:101492439-101669726:+ chr8:101504684:+ chr8:102504667-102681954:+ chr8:102516912:+ chr11:3148707,chr11:3148709 chr8:101494202,chr8:101494200 NA NA chr11:3169937,chr11:3169939 chr8:102506430,chr8:102506428 NA NA sense sense unknown 5'UTR/splice-site intron translocation medium none |CP2_transcription_factor(100%) |CP2(100%) 0 3 0 97 3 ENST00000263650.12 unknown upstream upstream none GCCAGTGGAGCCCCCGCGCGCCCGGCCGGCCCGGAGCACCGAGCTCGCGGCACGGTAGGAG|AGTATAGACTTGCTTCTCCCTGGAGGGCCACACAGTGACTCATCTGACTGCTTCTGCAAGCTGGTGCATAGATCATGCCAGACCAGCTTGGG...TAGTTAAGCTGCAGGAGATTGCATCATAGGATTTACTGCACGCGTCTTTAATGGAAGTGTTGTCGCCAACGTGAACTTCTTTGCTTATCAACCTATCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4423 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 383 TRUE 746 TRUE 266 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10718403:+ chr19:10828731-10944164:+ chr19:10829079:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10688550:+ chr19:10764980-10803076:+ chr19:10799226:+ chr19:10740914 chr19:10688311 NA NA chr19:10851590 chr19:10798987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynamin_family(11%)| Dynamin_N(0%)| 3 5 16 406 1057 ENST00000355667.11 ENST00000588657.6 downstream upstream duplicates(7),mismatches(2) GGGCGAGGAGCGCAGGGCGCTCGGGCCGGGGGCCGCCGGCGCCATGGGCAACCGCGGGATGGAAGAGCTGATCCCGCTGGTCAACAAACTGCAGGACGCCTTCAGCTCCATCGGCCAGAGCTGCCACCTGGACCTGCCGCAGATCGCTGTAGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAACTTCGTGGGCCG|ACTACAGTGGTAGTGGAGGCCGAAGCGGCGGGAACAGCTACGGCTCAGGCGGGGCATCCTACAACCCAGGGTCACACGGGGGCTACGGCGGAGGTTCTGGGGGCGGCTCCTCATACCAAGGCAAACAAG___GAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAAGCCCCCGCGGGGCGGAGATTTCTACCTTCTGCACTTACTCCCCATCAGAAGATCGAG MGNRGMEELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGr|lqw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,TRUE 10798022|10799855|10799226,10787839 FALSE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 4424 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 384 TRUE 746 TRUE 266 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10718403:+ chr19:10828731-10944164:+ chr19:10829079:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10689179:+ chr19:10764980-10803076:+ chr19:10799855:+ chr19:10740914 chr19:10688311 NA NA chr19:10851590 chr19:10798987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynamin_family(11%)| Dynamin_N(0%)| 4 8 11 406 1646 ENST00000355667.11 ENST00000588657.6 downstream upstream duplicates(8),mismatches(1) AGGAGCGCAGGGCGCTCGGGCCGGGGGCCGCCGGCGCCATGGGCAACCGCGGGATGGAAGAGCTGATCCCGCTGGTCAACAAACTGCAGGACGCCTTCAGCTCCATCGGCCAGAGCTGCCACCTGGACCTGCCGCAGATCGCTGTAGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTGGAGAACTTCGTGGGCCG|GAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAAGCCCCCGCGGGGCGGAGATTTCTACCTTCTGCACTTACTCCCCATCAGAAGATCGAGTTTTATGCATCACAGTTAACATGTCAGCTGGCCCTCCAGGCCCCCGCCCCCATCCCGTCCACG MGNRGMEELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGr|rlltvelqlpgvrpelqwpsqllpvltrrlwqkrrpqhelpvqisprgaeistfctyspsedrvlcitvnmsagppgprphpvh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,TRUE 10798022|10799855|10799226,10787839 FALSE|TRUE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 4429 MAST1::ZNF791 ENSG00000105613.10::ENSG00000173875.14 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 386 FALSE NA FALSE NA MAST1 ENSG00000105613.10 protein_coding + + chr19:12833951-12874952:+ chr19:12848057:+ chr19:12944765-12985766:+ chr19:12958871:+ ZNF791 ENSG00000173875.14 protein_coding + + chr19:12610918-12633840:+ chr19:12627721:+ chr19:12721732-12744654:+ chr19:12738535:+ chr19:12849750 chr19:12627385 NA NA chr19:12960564 chr19:12738199 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Domain_of_unknown_function_(DUF1908)(72%)|Zinc_finger__C2H2_type(100%) DUF1908(62%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 0 5 3 253 168 ENST00000251472.9 ENST00000446165.2 downstream upstream duplicates(5),mismatches(2) CGCGACTTTACCCGCGCCTACGAACCCGACAGCGTTCTGCCTCTGGCCGATGGCGTGCTCAGCTTCATCCACCACCAGATCATCGAGCTGGCCCGGGACTGCCTGACCAAGTCCCGTGACGGCCTCATCACCACGGTCTACTTCTATGAATTGCAGGAGAACCTGGAGAAGCTCCTTCAAGAC|AAGCCATACGGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTGCAGAAAACTTCAGTCCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACTATCTGTGGAAAAGCCTTCATGCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATGTAAGGAGTGTGAG RDFTRAYEPDSVLPLADGVLSFIHHQIIELARDCLTKSRDGLITTVYFYELQENLEKLLQD|kpygretl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 1 AGC MAST Q9Y2H9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4430 CCNY::CREM ENSG00000108100.18::ENSG00000095794.21 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 387 TRUE 748 TRUE 267 CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35337207:+ chr10:35535953-35861597:+ chr10:35626135:+ CREM ENSG00000095794.21 protein_coding + + chr10:35126791-35212958:+ chr10:35148368:+ chr10:35415719-35501886:+ chr10:35437296:+ chr10:35465959 chr10:35134177 NA NA chr10:35754887 chr10:35423105 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |bZIP_transcription_factor(100%),pKID_domain(100%) |bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),pKID(100%) 2 2 4 541 91 ENST00000374704.8 ENST00000490460.5 downstream upstream duplicates(6),mismatches(2) GGGGACTGGGAGAACAGGATAGCAGCAGGAGTCGGGGGGCCGCCGAAGATGGGGAACACTACCTCGTGCTGCGTGTCGTCCAGTCCCAAGCTCCGGAGGAATGCCCACTCCCGGCTGGAGTCCTACCGGCCAGACACGGACCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACCGGGAGAACATAGACG|ACAAATGACCATGGAAACAGTTGAATCCCAGCATGATGGAAGTATAACAGCTTCTTTGACAGAGAGCAAGTCTGCTCATGTGCAGACTCAGACTGGCCAAAATTCAATCCCTGCTTTAGCTCAG___CTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTGCTGCTTTGCCACAGGGAGTGGTGATGGCTGCATCGCCCGGAA MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENID|dk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 35626135|35626135 TRUE|TRUE 35500584|35500182 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4431 CCNY::CREM ENSG00000108100.18::ENSG00000095794.21 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 748 TRUE 267 CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35337207:+ chr10:35535953-35861597:+ chr10:35626135:+ CREM ENSG00000095794.21 protein_coding + + chr10:35126791-35212958:+ chr10:35179134:+ chr10:35415719-35501886:+ chr10:35468062:+ chr10:35465959 chr10:35134177 NA NA chr10:35754887 chr10:35423105 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |bZIP_transcription_factor(100%),pKID_domain(47%) |bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),pKID(20%) 0 2 2 541 139 ENST00000374704.8 ENST00000374721.7 downstream upstream duplicates(3) CTCGTGCTGCGTGTCGTCCAGTCCCAAGCTCCGGAGGAATGCCCACTCCCGGCTGGAGTCCTACCGGCCAGACACGGACCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACCGGGAGAACATAGACG|GAAAATACTGAATGAACTGTCCTCTGATGTGCCTGGTGTTCCCAAGATTGAAGAAGAGAG...TAGCATATATCAGACTAGCACGGGGCAATACA___...TTAAGTCTTCTCTAGTTATATTGAAGCAACT...___CTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTGCTGCTTTGCCACAGGGAGTGGTGATGGCTGCATCGCCCGGAA SCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENID|gky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 35626135|35626135 TRUE|TRUE 35500584|35500182 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4432 CCNY::CREM ENSG00000108100.18::ENSG00000095794.21 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 748 TRUE 267 CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35337207:+ chr10:35535953-35861597:+ chr10:35626135:+ CREM ENSG00000095794.21 protein_coding + + chr10:35126791-35212958:+ chr10:35206895:+ chr10:35415719-35501886:+ chr10:35495823:+ chr10:35465959 chr10:35134177 NA NA chr10:35754887 chr10:35423105 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%) 2 0 1 541 79 ENST00000374704.8 ENST00000685392.1 downstream upstream duplicates(2) TCGGGGGGCCGCCGAAGATGGGGAACACTACCTCGTGCTGCGTGTCGTCCAGTCCCAAGCTCCGGAGGAATGCCCACTCCCGGCTGGAGTCCTACCGGCCAGACACGGACCTGAGCCGCGAGGACACGGGCTGCAACCTGCAGCACATCAGCGACCGGGAGAACATAGACG|CTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTGCTGCTTTG...CGCCCGGAAGTTTGCACAGTaCCCAGCAGCTGGCAGAAGAAGCAACACGCAAACGAGAGCTGAGGCTAATGAAAAACAG___GGAAGCTGCCCGGGAGTGTC MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENID|aATGDMPTYQIRAPTAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 35626135|35626135 TRUE|TRUE 35500584|35500182 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4436 DPP9::ARRDC5 ENSG00000142002.19::ENSG00000205784.4 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DPP9 ENSG00000142002.19 protein_coding - - chr19:4674341-4724673:- chr19:4695378:- chr19:4674353-4724685:- chr19:4695390:- ARRDC5 ENSG00000205784.4 protein_coding - - chr19:4890437-4902896:- chr19:4891573:- chr19:4890449-4902908:- chr19:4891585:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region(65%)|Arrestin_(or_S-antigen)__C-terminal_domain(100%) DPPIV_N(57%),Dpp_8_9_N(100%)|Arrestin_C(100%) 0 3 1 187 6 ENST00000601130.6 ENST00000650722.2 upstream downstream duplicates(2) CAGGAATGTCCAGCCGTATGTGGTGTACGAGGAGGTCACCAACGTCTGGATCAAT|AACCCCTTGTTCGTGGAGGCTGAGGAGAAAGTCTCCTACAACTGCTGCCGCCAGGGCACTGTCTGTTTGCAAATCCAGATGGAAAGGAACACCTTCACGCCAGGAGAGAAGGTCGTCTTCACAACAGAGATCAACAACCAGACCAGCAAATGCATCAAGACGGTCGTATTCGCCCTGTATGCCCACATACAGTACGAGGGCTTCACGCCCAGTGCAGAGCGGCGGTCTCGGCTGGACAGCAGCGAGCTTCTGAGGCAGGAGGCCAACACCCCCGTGACCCG RNVQPYVVYEEVTNVWIN|NPLFVEAEEKVSYNCCRQGTVCLQIQMERNTFTPGEKVVFTTEINNQTSKCIKTVVFALYAHIQYEGFTPSAERRSRLDSSELLRQEANTPVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4437 ME3::SLC27A2 ENSG00000151376.18::ENSG00000140284.11 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 749 TRUE 268 ME3 ENSG00000151376.18 protein_coding - - chr11:86441108-86672636:- chr11:86487337:- chr11:86152150-86383678:- chr11:86198379:- SLC27A2 ENSG00000140284.11 protein_coding + + chr15:50182196-50236385:+ chr15:50222965:+ chr15:50474393-50528582:+ chr15:50515162:+ chr11:86471175,chr11:86471178 chr15:50217440,chr15:50217437 NA NA chr11:86182217,chr11:86182220 chr15:50509637,chr15:50509634 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Malic_enzyme__N-terminal_domain(86%)|AMP-binding_enzyme(38%),AMP-binding_enzyme_C-terminal_domain(100%) malic(75%)|AMP-binding(12%),AMP-binding_C(100%) 1 1 2 97 176 ENST00000524826.8 ENST00000267842.10 upstream upstream low_entropy(1) CAATATTAAG___GCCGTGGTGGaGACTGATGGGGAGCGCATCCTGGGCCTGGGgGACCTGGGCTGCTACGcCATGGGCATCCCTGTGGGCAAGCgGGCCCTG...CACTGGCTTAGCCTCCAGACCCTTTCAGAAATGACACCTGGGCGGGGGGGATCCAGTTACCTTCTTACTCCCCCCTCTCCTCCCACCTTCTGGTTCTTCCTAATAATCCTGGATACTTGTTGGAAAAAAAAAAAACAGGAACACCGGGAGTAGGCTCAGTCAATGGGTGCTGTCTGTTCCAGGAGCTGCTCAGAGACCC...GCACGGGAAGGCATACGATGACTTGCTGGATGAGTTCATGCAGGCTGTGACAGACAA|AAACCAAATGACCGTGATCATAAAGTGAGACTGGCACTGGGAAATGGCTTACGAGGAGATGTGTGGAGACAATTTGTCAAGAGATTTGGGGACATATGCATCTATGAGTTCTATGCTGCCACTGAAGGCAATATTGGATTTATGAATTATGCGAGAAAAGTTGGTGCTGTTGGAAG HGKAYDDLLDEFMQAVTDk|nqmtviik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4438 ME3::SLC27A2 ENSG00000151376.18::ENSG00000140284.11 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 749 TRUE 268 ME3 ENSG00000151376.18 protein_coding - - chr11:86441108-86672636:- chr11:86497962:- chr11:86152150-86383678:- chr11:86209004:- SLC27A2 ENSG00000140284.11 protein_coding + + chr15:50182196-50236385:+ chr15:50222966:+ chr15:50474393-50528582:+ chr15:50515163:+ chr11:86471175,chr11:86471178 chr15:50217440,chr15:50217437 NA NA chr11:86182217,chr11:86182220 chr15:50509637,chr15:50509634 NA NA sense sense in-frame intron CDS/splice-site translocation low none Malic_enzyme__N-terminal_domain(67%)|AMP-binding_enzyme(38%),AMP-binding_enzyme_C-terminal_domain(100%) malic(64%)|AMP-binding(12%),AMP-binding_C(100%) 0 0 0 72 176 ENST00000524826.8 ENST00000267842.10 upstream upstream low_entropy(1) CATGGGCATCCCTGTGGGCAAGCTGGCCCTGTACACGGCATGCGGAGGGGTGAACCCGCAGCAGTGCCTCCCTGTGCTGCTGGACGTCGGCACCAACAATGAGG|AACCAAATGACCGTGATCATAAAGTGAGACTGGCACTGGGAAATGGCTTACGAGGAGATGTGTGGAGACAATTTGTCAAGAGATTTGGG MGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNE|ePNDRDHKVRLALGNGLRGDVWRQFVKRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4448 ENSG00000287587::CTCF ENSG00000287587.1::ENSG00000102974.16 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000287587 ENSG00000287587.1 lncRNA + + chr1:42036143-42051784:+ chr1:42036472:+ chr1:42501814-42517455:+ chr1:42502143:+ CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67610824:+ chr16:67596370-67673080:+ chr16:67644727:+ chr1:42036639,chr1:42036636 chr16:67576599,chr16:67576593 NA NA chr1:42502310,chr1:42502307 chr16:67610502,chr16:67610496 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none |C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_6(100%),zf-H2C2_5(100%),zf-met(100%) 2 0 3 16 562 ENST00000670076.1 ENST00000646076.1 downstream upstream none GTTGCTGGTCCCCGACCCCTGGTACCCGGGCATCGTTTTTTCATCCCGGGCAGCTGGGACCCCGGGATGACCTAAGGAACAAGGATTCAGACGCAGACTCCACGGTGAATTGGCCTTATTCACGTGTGAACGAACGTCCAGGAGAAAACCAAACCCGAATGGGCCAGGCTCTAACCAGAGGAGACCCCAAAACTGTGATCTGCAT...AGGGGTGCTTTATTCAAGCCCTGGGTTCGCTCCCTGGTCAGCAAGTATGAG|GCAGGGGAAATGGAAGGTGATGCAGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAAGGAAAGGAGAGAAAGACTTACCAGAGACGCCGGGAAGGGGGCCAGGAAGAAGATGCCTGCCACTTACCCCAGAACCAGACGGATGGGGGTGAGGTGGTCCAGGATGTCAACAGCAGTGTACAGATGGTGATGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense 4473 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 388 TRUE 754 TRUE 269 BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10415488:+ chr5:10353807-10440500:+ chr5:10415600:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none BNIP3(3%)| BNIP3(0%)| 72 85 221 1369 2635 ENST00000633835.2 ENST00000274140.10 upstream upstream duplicates(43),mismatches(24) GGGCTCCGCTCAGTCCGGGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGG|TATTTGCTGGCCGTTGGTTAATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGTCTCTATGTTTGCTGGCTAACCATAAGGGCTGTGACGGTGATGGTGGCATGGATGCCTCAGGGACGCAGAGTGATCTTCCAGAAGGTTAAAGAGTGGTCTCTCATG___ATCATGAAGACTTTGATAGTTGCGGTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGTTTGAG MSQNGAPGMQEESLQ|vFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4474 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 754 TRUE 269 BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10417270:+ chr5:10353807-10440500:+ chr5:10417382:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BNIP3(3%)| BNIP3(0%)| 2 4 58 1369 3798 ENST00000633835.2 ENST00000274140.10 upstream upstream duplicates(2),mismatches(6) TCAGTCCGGGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGG|ATCATGAAGACTTTGATAGTTGCGGTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGTTTGAGCTGGTCATTGTGGCTCCCCTGAGGGTTCCCTTGGATCAGACTCCTCTTTTTTATCCATGGCAG___GACTGGGCACTTGGAGTCCTGCATGCCAAAATCATTGCAGCTATAACATTG MSQNGAPGMQEESLQ|dhedfdscgavgwscpspsgapv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4475 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 754 TRUE 269 BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10423735:+ chr5:10353807-10440500:+ chr5:10423847:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BNIP3(3%)| BNIP3(0%)| 4 8 32 1369 3203 ENST00000368636.9 ENST00000274140.10 upstream upstream duplicates(4),mismatches(4) CCGGGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGG|GACTGGGCACTTGGAGTCCTGCATGCCAAAATCATTGCAGCTATAACATTGATGGGTCCTCAGTGGTGGTTGAAAACTGTAATTGAACAG___GTTTACGCAAATGGCATCCGGAACATTGACCTTCACTATATTGTTCGTAAACTGGCAGCTCCCGTGATCTCTGTGCTGTTGCTTTCCCTGTGTGTACCTTATGTCATAGCTTCTGGTGTTGTTCCTTTACTAG MSQNGAPGMQEESLQ|glgtwspacqnhcsynidgssvvvencn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4476 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 754 TRUE 269 BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10415473:+ chr5:10353807-10440500:+ chr5:10415585:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none BNIP3(3%)| BNIP3(0%)| 1 0 221 1369 2626 ENST00000633835.2 ENST00000512449.5 upstream upstream duplicates(19),mismatches(11) GGGCTCCGCTCAGTCCGGGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGG|CTTTTCTATTTTCAGTATTTGCTGGCCGTTGGTTAATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGTCTCTATGTTTGCTGGCTAACCATAAGGGCTGTGACGGTGATGGTGGCATGGATGCCTCAGGGACGCAGAGTGATCTTCCAGAAGGTTAAAGAGTGGTCTCTCATG___ATCATGAAGACTTTGATAGTTGCGGTGCTGTTGGCTGGA MSQNGAPGMQEESLQ|aflfsvfagrwlmsfwtgtakihelytaacglyvcwltiravtvmvawmpqgrrvifqkvkewslmimktlivavlla NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4477 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 754 TRUE 269 BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10426390:+ chr5:10353807-10440500:+ chr5:10426502:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none BNIP3(3%)| BNIP3(0%)| 1 0 20 1369 3842 ENST00000368636.9 ENST00000274140.10 upstream upstream duplicates(1),mismatches(3) GGAGCGCAGCTGGGCCGCGGCGCTCCGACCTCCGCTTTCCCACCGCCCGCAGCTGAAGCACATCCCGCAGCCCGGCGCGGACTCCGATCGCCGCAGTTGCCCTCTGGCGCCATGTCGCAGAACGGAGCGCCCGGGATGCAGGAGGAGAGCCTGCAGG|GTTTACGCAAATGGCATCCGGAACATTGACCTTCACTATATTGTTCGTAAACTGGCAGCTCCCGTGATCTCTGTGCTGTTGCTTTCCCTGTGTGTACCTTATGTCATAGCTTCTGGTGTTGTTCCTTTACTAG___GTGTTACTGCGGAAATGCAAAACTTAGTCCATCGGCG MSQNGAPGMQEESLQ|glrkwhpeh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4478 CASC11::TMEM65 ENSG00000249375.8::ENSG00000164983.9 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 389 TRUE 755 TRUE 270 CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733825:- chr8:128698588-128751233:- chr8:128746071:- TMEM65 ENSG00000164983.9 protein_coding - - chr8:124306189-124372701:- chr8:124330792:- chr8:125318430-125384942:- chr8:125343033:- chr8:127728612,chr8:127728612,chr8:127728612,chr8:127728617,chr8:127728623,chr8:127728621,chr8:127728617 chr8:124370401,chr8:124370398,chr8:124370396,chr8:124370403,chr8:124370403,chr8:124370403,chr8:124370402 NA NA chr8:128740858,chr8:128740858,chr8:128740858,chr8:128740863,chr8:128740869,chr8:128740867,chr8:128740863 chr8:125382642,chr8:125382639,chr8:125382637,chr8:125382644,chr8:125382644,chr8:125382644,chr8:125382643 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Transmembrane_protein_65_(100%) |TMEM65(100%) 26 26 52 126 420 ENST00000502463.7 ENST00000297632.8 upstream downstream duplicates(6),mismatches(2) TTTTGCTCCCTCTCAAACCCTCTCCCTTTCTCTGCTGCTCCTCCGTAGCAGTACTGTTTGACAAACCGCATCCTTGTCCT___GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG|AAAAATTGGAAGCTCCACCACCCACCCCAGGACAGCTGAGATATG___TATTCATCCACAATGCGATACCTTTCATAGGGTTTGGCTTTTTGGATAATGCAATTATGATTGTTGCT___GGAACCCATATTGAAATGTCTATTGGAATTATTTTGGGAATTTCAACTATGGCAG___CTGCTGCTTTGGGAAATCTTGTGTCAGATCTAGCTGGACTTGG___ACTTGCAGGCTACGTTGAAGCATTGGCTTCCAGGTTAGGCCTGTCAATTCCTGATCTCACACCAAAGCAAGTTGACATGTGGCAAACACGTCTTAGTACACATTTG___GGCAAAGCTGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4479 CASC11::TMEM65 ENSG00000249375.8::ENSG00000164983.9 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 755 TRUE 270 CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733825:- chr8:128698588-128751233:- chr8:128746071:- TMEM65 ENSG00000164983.9 protein_coding - - chr8:124306189-124372701:- chr8:124327421:- chr8:125318430-125384942:- chr8:125339662:- chr8:127728612,chr8:127728612,chr8:127728612,chr8:127728617,chr8:127728623,chr8:127728621,chr8:127728617 chr8:124370401,chr8:124370398,chr8:124370396,chr8:124370403,chr8:124370403,chr8:124370403,chr8:124370402 NA NA chr8:128740858,chr8:128740858,chr8:128740858,chr8:128740863,chr8:128740869,chr8:128740867,chr8:128740863 chr8:125382642,chr8:125382639,chr8:125382637,chr8:125382644,chr8:125382644,chr8:125382644,chr8:125382643 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Transmembrane_protein_65_(100%) |TMEM65(100%) 1 0 37 126 511 ENST00000502463.7 ENST00000297632.8 upstream downstream duplicates(2),mismatches(2) CTAGGATGTAAACAGA___...CGTAGCAGTACTGTTTGACAAACCGCATCCTTGTCCT___GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG|TATTCATCCACAATGCGATACCTTTCATAGGGTTTGGCTTTTTGGATAATGCAATTATGATTGTTGCT___GGAACCCATATTGAAATGTCTATTGGAATTATTTTGGGAATTTCAACTATGGCAG___CTGCTGCTTTGGGAAATCTTGTGTCAGATCTAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4480 CASC11::TMEM65 ENSG00000249375.8::ENSG00000164983.9 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 755 TRUE 270 CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733825:- chr8:128698588-128751233:- chr8:128746071:- TMEM65 ENSG00000164983.9 protein_coding - - chr8:124306189-124372701:- chr8:124323375:- chr8:125318430-125384942:- chr8:125335616:- chr8:127728612,chr8:127728612,chr8:127728612,chr8:127728617,chr8:127728623,chr8:127728621,chr8:127728617 chr8:124370401,chr8:124370398,chr8:124370396,chr8:124370403,chr8:124370403,chr8:124370403,chr8:124370402 NA NA chr8:128740858,chr8:128740858,chr8:128740858,chr8:128740863,chr8:128740869,chr8:128740867,chr8:128740863 chr8:125382642,chr8:125382639,chr8:125382637,chr8:125382644,chr8:125382644,chr8:125382644,chr8:125382643 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Transmembrane_protein_65_(81%) |TMEM65(69%) 0 1 22 126 604 ENST00000502463.7 ENST00000297632.8 upstream downstream duplicates(1),mismatches(2) CTAGGATGTAAACAGA___...GTTTGACAAACCGCATCCTTGTCCT___GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG|GGAACCCATATTGAAATGTCTATTGGAATTATTTTGGGAATTTCAACTATGGCAG___CTGCTGCTTTGGGAAATCTTGTGTCAGATCTAGCTGGACTTGG___ACTTGCAGGCTACGTTGAAGCATTGGCTTCCAGGTTAGGCCTGTCAATTCCTGATCTCACACCAAAGCAAGTTGACATGTGGCAAACACGTCTTAGTACACATTTG___GGCAAAGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4483 CHD2::AGBL1 ENSG00000173575.24::ENSG00000273540.5 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 390 TRUE 756 TRUE 271 CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92929091:+ chr15:93429433-93571226:+ chr15:93472321:+ AGBL1 ENSG00000273540.5 protein_coding + + chr15:86079871-87049169:+ chr15:86224914:+ chr15:86623102-87592400:+ chr15:86768145:+ chr15:92932605,chr15:92932602 chr15:86195086,chr15:86195080 NA NA chr15:93475835,chr15:93475832 chr15:86738317,chr15:86738311 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Cytosolic_carboxypeptidase_N-terminal_domain(100%),Zinc_carboxypeptidase(100%) |Pepdidase_M14_N(100%),Peptidase_M14(100%) 9 40 37 324 78 ENST00000394196.9 ENST00000441037.7 downstream upstream duplicates(11),mismappers(1),mismatches(3) CCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG___GCAAGTAGCGGGTCTGAGAGTGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCTGAAAAAACA|GGCAGCCACTGAAGTTTTGGCAGCATTGCTGAAATCCA___AGTCGAACGGCCGCAGAGCAGTGAACCGAGGCTACGTCACCAGCCTGCTCGGGCTGCACCAGGACTGGCACAGCCATGACACAGCCAACGCCTACGTGCAGATCCGACGGGGCTTGCTGCTCTGCCTCAGGCACATTGCTGCCCTCCGGTCCGGCAGGGAGGCCTTCCTGGCAGCACAGGGCATGGAGATCCTCTTCAGCACCACACAG PDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKq|AATEVLAALLKSKSNGRRAVNRGYVTSLLGLHQDWHSHDTANAYVQIRRGLLLCLRHIAALRSGREAFLAAQGMEILFSTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 4484 CHD2::AGBL1 ENSG00000173575.24::ENSG00000273540.5 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 756 TRUE 271 CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92927330:+ chr15:93429433-93571226:+ chr15:93470560:+ AGBL1 ENSG00000273540.5 protein_coding + + chr15:86079871-87049169:+ chr15:86224914:+ chr15:86623102-87592400:+ chr15:86768145:+ chr15:92932605,chr15:92932602 chr15:86195086,chr15:86195080 NA NA chr15:93475835,chr15:93475832 chr15:86738317,chr15:86738311 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cytosolic_carboxypeptidase_N-terminal_domain(100%),Zinc_carboxypeptidase(100%) |Pepdidase_M14_N(100%),Peptidase_M14(100%) 1 1 12 351 78 ENST00000625990.3 ENST00000441037.7 downstream upstream none TTTGGACATACTACATGGATCAG___TCACTCAGCCTCTGAAGAAGCTTCGGGTTCAGACTCAGGCAGTCAGTCGGAAAGTGAGCAGGGAAGTGATCCAGGAAG...GCGAATCAGCAGGTTCCAAATCCCAGCCAGTCCTCCCAGAAGCCAAAGAGAAGCCAGCCTCTAAGAAGGAACGGATAGCTGATGTGAAGAAG___ATGTGGGAAGAATATCCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG|GGCAGCCACTGAAGTTTTGGCAGCATTGCTGAAATCCA___AGTCGAACGGCCGCAGAGCAGTGAACCGAGGCTACGTCACCAGCCTGCTCGGGCTGCACCAGGACTGGCACAGCC...AGATCCGACGGGGCTTGCTGCTCTGCCTCAGGCACATTGCTGCCCTCCGGTCCGGCAGGGAGGCCTTCCTGGCAGCACAGGGCATGGAGATCCTCTTCAGC MWEEYPDVYGVRRSNRSRQEPSRFNIKEE|gsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 4500 ENSG00000214803::FER1L6 ENSG00000214803.3::ENSG00000214814.7 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000214803 ENSG00000214803.3 lncRNA - + chr8:124192671-124247398:- chr8:124202415:+ chr8:125204912-125259639:- chr8:125214656:+ FER1L6 ENSG00000214814.7 protein_coding + + chr8:123851987-124120061:+ chr8:124091423:+ chr8:124864227-125132302:+ chr8:125103664:+ NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |C2_domain(21%),Ferlin_C-terminus(100%) |C2(14%),Ferlin_C(100%) 1 1 5 5 50 unknown ENST00000522917.5 downstream upstream none CGCTTGTGCACAGTCCAGGAGCTTTGCCCCAACTAGTGCTGTCACAAGTCATGTGACAACAACCAGGGGAATGTTCCCATTAACAGAGACGGTGGGACGCC...CTCCCATCATTGTTGTAACATCTTTGGACACCTCCCTCCTTCTCCCAAGGAAAGCCACAGCCCTGTGAGTGACCAGAGGCAACAGAACAAAGACCGGATTCTCAGTTTCCTGATTCCCTCGCACAGCACGGTCTCTCTGCAGGGAGTCTGGGAATCCTGACACTGCCTGGATGGAGTGTCCACACCAGTGGCTAAAG|AGAAGGATACAATGCCTGGAGAGACACGTCCAAACCCACCGAAATCCTCACTAAGCTCTGCAAAGACAACAAGCTGGATGGACCCTACTTTCACCCTGGGAAAATACAGATAGGAAACCAAGTCTTTTCTGGAAAAACTATCTTCACTGAAGAGGACACTG___ATGAGACAGTGGAGTCTTATGAACACCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4507 FAM91A1::ENSG00000214803 ENSG00000176853.16::ENSG00000214803.3 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 760 TRUE 272 FAM91A1 ENSG00000176853.16 protein_coding + + chr8:123768439-123815452:+ chr8:123799885:+ chr8:124780679-124827692:+ chr8:124812125:+ ENSG00000214803 ENSG00000214803.3 lncRNA - - chr8:124192671-124247398:- chr8:124207368:- chr8:125204912-125259639:- chr8:125219609:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none FAM91_C-terminus(50%),FAM91_N-terminus(100%)| FAM91_C(49%),FAM91_N(100%)| 4 0 3 6700 15 ENST00000334705.12 unknown downstream downstream duplicates(2),mismatches(1) CAATTATG___GTTTTCCTCTGGATCTCTTACGCTGTGAAAGCCTTCTTGGTTTGGACCCTGCAACTTGCAGCAGAGTTCTAAACAAAAATTACACGCTGCTTGTTTCCATGGCTCCCCTCACCAATGAAATCCGGCCTGTC???AG...AGACTTCGAAAACTGCCAGATATATTTCAG___AGTTATGATCGATTGCTAATAACATCTTGGGGTCATGATCCTGGAGTAGTTCCTACCTCAAATGTGCTCACGATGTTGAATGATGCTTTAACACATTCTGCAGTTTTAATTCAG|GGTATCCTGTGAGTCTGTTATATTGATGACATATTGTGGATAGTCTGGAGAGCAGAAGGAGCAGGTTCACTTGTATCTTGCCAAGACATGTGTGCCAGAAGGTGCTGATACCTCAGGGA RLRKLPDIFQSYDRLLITSWGHDPGVVPTSNVLTMLNDALTHSAVLIQ|gil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4508 FAM91A1::ENSG00000214803 ENSG00000176853.16::ENSG00000214803.3 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 760 TRUE 272 FAM91A1 ENSG00000176853.16 protein_coding + + chr8:123768439-123815452:+ chr8:123768774:+ chr8:124780679-124827692:+ chr8:124781014:+ ENSG00000214803 ENSG00000214803.3 lncRNA - - chr8:124192671-124247398:- chr8:124193544:- chr8:125204912-125259639:- chr8:125205785:- chr8:123800955,chr8:123800953 chr8:124207394,chr8:124207393 NA NA chr8:124813195,chr8:124813193 chr8:125219635,chr8:125219634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none FAM91_N-terminus(5%)| FAM91_N(0%)| 0 1 0 2204 286 ENST00000334705.12 ENST00000523703.1 downstream downstream none GAACAAGTTGCCGGCCAACGTGAGACAG|ACATTTTTTTCCCTCTACATGTGTCAGCACTTCCCAGATGTGATGATGGTATTTGAAAGAGCATGATCTGGAA...ATGGATGCACAGAGGACAAGGCCAGGCAGCGCAGGTCTTCATTACACTGAGACTTTGCCTGAGTCCCATGGTGCCCCAGTGCCCTGGCCTGGGCACATCAG NKLPANVRQ|tffslymcqhfpdvmmvfera* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4509 FAM91A1::ENSG00000214803 ENSG00000176853.16::ENSG00000214803.3 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 760 TRUE 272 FAM91A1 ENSG00000176853.16 protein_coding + + chr8:123768439-123815452:+ chr8:123799885:+ chr8:124780679-124827692:+ chr8:124812125:+ ENSG00000214803 ENSG00000214803.3 lncRNA - - chr8:124192671-124247398:- chr8:124193544:- chr8:125204912-125259639:- chr8:125205785:- chr8:123800955,chr8:123800953 chr8:124207394,chr8:124207393 NA NA chr8:124813195,chr8:124813193 chr8:125219635,chr8:125219634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none FAM91_C-terminus(50%),FAM91_N-terminus(100%)| FAM91_C(49%),FAM91_N(100%)| 1 0 0 6700 286 ENST00000334705.12 ENST00000523703.1 downstream downstream none AAAGGTACAAGACTTCGAAAACTGCCAGATATATTTCAG___AGTTATGATCGATTGCTAATAACATCTTGGGGTCATGATCCTGGAGTAGTTCCTACCTCAAA...CTTTAACACATTCTGCAGTTTTAATTCAG|ACATTTTTTTCCCTCTACATGTGTCAGCACTTCCCAGATGTGATGATGGTATTTGAAAGAGCATGATCTGGA LTHSAVLIQ|tffslymcqhfpdvmmvfera* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4523 HIRA::C22orf39 ENSG00000100084.14::ENSG00000242259.9 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19351358:- chr22:19318221-19434973:- chr22:19338881:- C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19383705:- chr22:19338891-19435234:- chr22:19371228:- chr22:19351239,chr22:19351241 chr22:19385441,chr22:19385440 NA NA chr22:19338762,chr22:19338764 chr22:19372964,chr22:19372963 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication low none TUP1-like_enhancer_of_split(100%),WD_domain__G-beta_repeat(100%)| DUF3128(100%),Hira(100%),MRP-L28(100%),WD40(100%)|Hira(100%) 5 7 0 187 253 ENST00000263208.5 ENST00000509549.5 upstream downstream duplicates(1),low_entropy(1) GTCCGATGGGAAGGCGTACTGCTTTAATCCGTCACTTTCCACATG___GAACCTGGTTTCTGACAAGCAGGACTCACTGGCTCAGTGTGCAGACTTTAGGAGCAGCCTGCCATCCCAGGACGCCATGCTGTGCTCAGGACCGTTAGCCATAATCCAGGGCCGCACCTCCAA___CTCGGGAAGGCAGGCTGCCCGGCTCTTCTCCGTGCCTCATGTGGTGCAG...GTACCTCGTAAACGAAG___GGTTTGAATACCGACTTCGAGAAATATGCAAGGACTTACTGGGTCCGGTTCACTACTCCACTGGAAGCCAGTGGGAGTCAACAGTAGTG|AATCTTTTGAAGAAACAAGTTGAGACTCGGACAGCAGATGGCCGGAGAAGAATCACGCCTCTCTGCATAGCACAGCTGGACACTGG___GGACTTCTCCACGGCATTCTTTAACAGCATCCCCCTCTCGGGCTCCCTGGCGGGCACCATGCTCTCTTCTCATAGCAGTCCACAGCTACTGCCACTGGACTCCAGTACCCCTAACTCCTTCGGCGCCTCGAAGCCTTGCACAGAGCCTGTGGTGGCTGCCAGTGCCAGACCTGCAGGCGATTCTGTCAATAAAGACAG___TATGAATGCTACCTCTACTCCTGCTG...CGACCCCGTCCAAGATCGAACCCATGAAAGCGTTTGACTCCCGGTTCACAGAGCGGTCCAAAGCCACACCAGGTGCTCCTGCCCTGACCAGCATGACTCCGA YLVNEGFEYRLREICKDLLGPVHYSTGSQWESTVV|nllkkqvetrtadgrrritplciaqldtgdfstaffnsiplsgslagtmlsshsspqllpldsstpnsfgaskpctepvvaasarpagdsvnkdsmnatstpa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4564 CRACR2A::TIGAR ENSG00000130038.10::ENSG00000078237.7 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 769 TRUE 273 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- TIGAR ENSG00000078237.7 protein_coding + + chr12:4307763-4360028:+ chr12:4349819:+ chr12:4416929-4469194:+ chr12:4458985:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Histidine_phosphatase_superfamily_(branch_1)(56%) |His_Phos_1(7%) 0 2 258 2225 4581 ENST00000535507.1 ENST00000635110.1 upstream upstream duplicates(25),mismatches(45) CGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|ACCATGCATGGAATTTTGGAGAGAAGCAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGACTTCGGGAAAGG___AAATACGGGGTTGTAGAAGGCAAAGCGCTAAGTGAGCTGAGGGCCATGGCCAAAGCAGCCAGGGAAGAGTGCCCTGTGTTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4565 CRACR2A::TIGAR ENSG00000130038.10::ENSG00000078237.7 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 769 TRUE 273 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- TIGAR ENSG00000078237.7 protein_coding + + chr12:4307763-4360028:+ chr12:4351267:+ chr12:4416929-4469194:+ chr12:4460433:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Histidine_phosphatase_superfamily_(branch_1)(37%) |His_Phos_1(3%) 0 1 149 2225 4133 ENST00000535507.1 ENST00000635110.1 upstream upstream duplicates(12),mismatches(32) CGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|AAATACGGGGTTGTAGAAGGCAAAGCGCTAAGTGAGCTGAGGGCCATGGCCAAAGCAGCCAGGGAAGAGTGCCCTGTGTTTACACCGCCCGGAGGAGAGACGCTGGACCAG___GTGAAAATGCGTGGAATAGACTTTTTTGAATTTCTTTGTCAACTAATCCTGAAAGAAGCaGATCAAAAAGAACAGTTTTCCCAAGGATCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4566 CRACR2A::ENSG00000285901 ENSG00000130038.10::ENSG00000285901.2 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 770 TRUE 274 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- ENSG00000285901 ENSG00000285901.2 protein_coding + + chr12:4273762-4405490:+ chr12:4331280:+ chr12:4382928-4514656:+ chr12:4440446:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none none |FGF(100%),His_Phos_1(67%) 179 305 300 2225 5216 ENST00000535507.1 ENST00000648100.1 upstream upstream duplicates(160),mismappers(5),mismatches(46) GGCGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|TGGAGAAACAAGATTTAACAAGGAGAAAATAATCCAAG___GACAAGGAGTAGATGAACCTCTTTCAGAAACTGGATTTAAACAAGCAGCAGCTGCTGGTATATTTCTGAATAATGTGAAGTTTACTCATGCTTTCTCCAGTGATCTCATGAGGACAAAGCAG___ACCATGCATGGAATTTTGGAGAGAAGCAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGACTTCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4567 CRACR2A::ENSG00000285901 ENSG00000130038.10::ENSG00000285901.2 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 770 TRUE 274 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- ENSG00000285901 ENSG00000285901.2 protein_coding + + chr12:4273762-4405490:+ chr12:4337039:+ chr12:4382928-4514656:+ chr12:4446205:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site inversion high none none |FGF(100%),His_Phos_1(49%) 1 25 300 2225 4720 ENST00000535507.1 ENST00000648100.1 upstream upstream duplicates(54),low_entropy(2),mismatches(32) GCTTGGCGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|GACAAGGAGTAGATGAACCTCTTTCAGAAACTGGATTTAAACAAGCAGCAGCTGCTGGTATATTTCTGAATAATGTGAAGTTTACTCATGCTTTCTCCAGTGATCTCATGAGGACAAAGCAG___ACCATGCATGGAATTTTGGAGAGAAGCAAATTTTGCAAAGATATGACGGTAAAGTATGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4568 CRACR2A::ENSG00000285901 ENSG00000130038.10::ENSG00000285901.2 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 770 TRUE 274 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- ENSG00000285901 ENSG00000285901.2 protein_coding + + chr12:4273762-4405490:+ chr12:4349819:+ chr12:4382928-4514656:+ chr12:4458985:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none |FGF(100%),His_Phos_1(7%) 0 2 261 2225 4581 ENST00000535507.1 ENST00000674624.1 upstream upstream duplicates(25),mismatches(44) CGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|ACCATGCATGGAATTTTGGAGAGAAGCAAATTTTGCAAAGATATGACGGTAAAGTATGACTCAAGACTTCGGGAAAGG___AAATACGGGGTTGTAGAAGGCAAAGCGCTAAGTGAGCTGAGGGCCATGGCCAAAGCAGCCAGGGAAGAGTGCCCTGTGTTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4569 CRACR2A::ENSG00000285901 ENSG00000130038.10::ENSG00000285901.2 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 770 TRUE 274 CRACR2A ENSG00000130038.10 protein_coding - - chr12:3606633-3764819:- chr12:3753015:- chr12:3715799-3873985:- chr12:3862181:- ENSG00000285901 ENSG00000285901.2 protein_coding + + chr12:4273762-4405490:+ chr12:4351267:+ chr12:4382928-4514656:+ chr12:4460433:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none |FGF(100%),His_Phos_1(3%) 0 1 152 2225 4133 ENST00000535507.1 ENST00000674624.1 upstream upstream duplicates(12),mismatches(32) CGCGCGCACGTCCCGGAGGGCGTCCAGGGGGCGCCGCTTCCCGTTCAGCTCCGCTGAGGGGCTGGTCCAGCCCGCGCGGCTCGGAGCGGAAAGAGTCGGGCGGAGCAGGCGGCTGCTTGACAGCTGAGAGCCGAGCGGGCGGCGCGGGCAGGTCCACGGGAAGCCTACACGCCCAAG|AAATACGGGGTTGTAGAAGGCAAAGCGCTAAGTGAGCTGAGGGCCATGGCCAAAGCAGCCAGGGAAGAGTGCCCTGTGTTTACACCGCCCGGAGGAGAGACGCTGGACCAG___GTGAAAATGCGTGGAATAGACTTTTTTGAATTTCTTTGTCAACTAATCCTGAAAGAAGCaGATCAAAAAGAACAGTTTTCCCAAGGATCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4573 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 771 TRUE 275 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- chr8:127880647,chr8:127880438,chr8:127880498,chr8:127888143,chr8:128029772,chr8:127978603,chr8:128029709,chr8:127862180,chr8:127958510,chr8:127978757,chr8:127880646,chr8:127880597,chr8:127880644,chr8:127880646,chr8:127880869,chr8:127880855,chr8:127975217 chr8:127705266,chr8:127705529,chr8:127704754,chr8:127704754,chr8:127721279,chr8:127720411,chr8:127720411,chr8:127720588,chr8:127720588,chr8:127720588,chr8:127705267,chr8:127705267,chr8:127705268,chr8:127705268,chr8:127705267,chr8:127704728,chr8:127720359 NA NA chr8:128892893,chr8:128892684,chr8:128892744,chr8:128900389,chr8:129042018,chr8:128990849,chr8:129041955,chr8:128874426,chr8:128970756,chr8:128991003,chr8:128892892,chr8:128892843,chr8:128892890,chr8:128892892,chr8:128893115,chr8:128893101,chr8:128987463 chr8:128717511,chr8:128717774,chr8:128716999,chr8:128716999,chr8:128733525,chr8:128732657,chr8:128732657,chr8:128732834,chr8:128732834,chr8:128732834,chr8:128717512,chr8:128717512,chr8:128717513,chr8:128717513,chr8:128717512,chr8:128716973,chr8:128732605 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 2 4 12 195 21 ENST00000671088.1 ENST00000519071.6 downstream downstream duplicates(4),mismatches(1) GTCCTGGCAGGGCCACAGGAAGAGCATACACATCTCCTGCGTCTTCGTATTTT___GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|GAGATCCCCAGAGGCAATTGTCCACCTGACTTCAGAATCAGAAGTAGCTCTGCTTTTCCTGAGAAGTGGTGCGGGTTTTGCCTTATGGATGCTAACTGAGACTGGAACATGTTCCCTTTTTTGTATCAGCTGCTGGTACAAAATTGAGAGTTGAGAGCCAAAACTGTACCCTTATCACCTGTCAGTAACTTAAG___GAGGAAGTCAGCTACCATGCCTCCAGGACACTCAAGTAACCCCATGGAGATGACATTGCAGAGAAGAACTGGTCGAAAGCCAGTACCCACTTTGCCATCTGTGTGAACAATCCACCTTTGAGTGGGTCCTCCAGCCCACATCAAGCCTTCA...ATCGGGAGGCTTTGAAGTGCTGTAAATGCTTTACCTATTTGAGGTTTCATTATTATTTTGTCTTTTACATTTAGTCATTTTCTGCAAGAGGGGAGAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4580 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 771 TRUE 275 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127700839:- chr8:128698588-128751233:- chr8:128713084:- chr8:127880647,chr8:127880438,chr8:127880498,chr8:127888143,chr8:128029772,chr8:127978603,chr8:128029709,chr8:127862180,chr8:127958510,chr8:127978757,chr8:127880646,chr8:127880597,chr8:127880644,chr8:127880646,chr8:127880869,chr8:127880855,chr8:127975217 chr8:127705266,chr8:127705529,chr8:127704754,chr8:127704754,chr8:127721279,chr8:127720411,chr8:127720411,chr8:127720588,chr8:127720588,chr8:127720588,chr8:127705267,chr8:127705267,chr8:127705268,chr8:127705268,chr8:127705267,chr8:127704728,chr8:127720359 NA NA chr8:128892893,chr8:128892684,chr8:128892744,chr8:128900389,chr8:129042018,chr8:128990849,chr8:129041955,chr8:128874426,chr8:128970756,chr8:128991003,chr8:128892892,chr8:128892843,chr8:128892890,chr8:128892892,chr8:128893115,chr8:128893101,chr8:128987463 chr8:128717511,chr8:128717774,chr8:128716999,chr8:128716999,chr8:128733525,chr8:128732657,chr8:128732657,chr8:128732834,chr8:128732834,chr8:128732834,chr8:128717512,chr8:128717512,chr8:128717513,chr8:128717513,chr8:128717512,chr8:128716973,chr8:128732605 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 3 195 22 ENST00000671088.1 ENST00000519071.6 downstream downstream duplicates(1) GGGCTGGGTCGCGTGTCCTGGCAGGGCCACAGGAAGAGCATACACATCTCCTGCGTCTTCGTATTTT___GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|GAGGAAGTCAGCTACCATGCCTC...GGAGATGACATTGCAGAGAAGAACTGGTCGAAAGCCAGTACCCACTTTGCCATCTGTGTGAACAATCCACCTTTGAGTGGGTCCTCCAGCCCACATCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4581 CASC11::PCAT1 ENSG00000249375.8::ENSG00000253438.5 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127706123:- chr8:128698588-128751233:- chr8:128718368:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:126750583:- chr8:127568568-128431295:+ chr8:127762828:- chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127691798,chr8:127696782,chr8:127696851,chr8:127697309 chr8:126923764,chr8:126923781,chr8:126923782,chr8:126923785,chr8:126923788,chr8:126923791,chr8:126923792,chr8:126923794,chr8:126923795,chr8:126923796,chr8:126923798,chr8:126923799,chr8:126923800,chr8:126923801,chr8:126923804,chr8:126923805,chr8:126923807,chr8:126923809,chr8:126923811,chr8:126923783,chr8:126923812,chr8:126923776,chr8:126923814,chr8:126923815,chr8:126923820,chr8:126923821,chr8:126923822,chr8:126923823,chr8:126923824,chr8:126923825,chr8:126923827,chr8:126923828,chr8:126923829,chr8:126923831,chr8:126923830,chr8:126923832,chr8:126923833,chr8:126923834,chr8:126923835,chr8:126923836,chr8:126923803,chr8:126923766,chr8:126923767,chr8:126923771,chr8:126923772,chr8:126923774,chr8:126923777,chr8:126923779,chr8:126862354,chr8:126862277,chr8:127061899 NA NA chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128704043,chr8:128709027,chr8:128709096,chr8:128709554 chr8:127936009,chr8:127936026,chr8:127936027,chr8:127936030,chr8:127936033,chr8:127936036,chr8:127936037,chr8:127936039,chr8:127936040,chr8:127936041,chr8:127936043,chr8:127936044,chr8:127936045,chr8:127936046,chr8:127936049,chr8:127936050,chr8:127936052,chr8:127936054,chr8:127936056,chr8:127936028,chr8:127936057,chr8:127936021,chr8:127936059,chr8:127936060,chr8:127936065,chr8:127936066,chr8:127936067,chr8:127936068,chr8:127936069,chr8:127936070,chr8:127936072,chr8:127936073,chr8:127936074,chr8:127936076,chr8:127936075,chr8:127936077,chr8:127936078,chr8:127936079,chr8:127936080,chr8:127936081,chr8:127936048,chr8:127936011,chr8:127936012,chr8:127936016,chr8:127936017,chr8:127936019,chr8:127936022,chr8:127936024,chr8:127874599,chr8:127874522,chr8:128074144 NA NA sense antisense unknown intron intron deletion/5'-5' high none none none 51 33 190 142 82 unknown unknown upstream downstream duplicates(27),mismappers(16),mismatches(19) GCTTTTTGCTAGTTCTTTCATTCCATATCTCAGGAATCCTTCAAATATAGTAACCCAAGAGAGGTATGGAAGGCTTATCTCACAGAGCTACAGGGAAATACAGACTTTTTTTTCCCCCACAGAAGCTAAATCTGAAAATGTGACTAGAGAACTGTGTTAGGAGCTGCTTGATTATCGTGAATTGAATTCTTGACCAAACAGTGCAATTTGTTTTTTTGTTTGTTTGCTTTTTTGAGACAGAGTCTTGaTC|ATTTCTTACCAATGAGGCTTACTAAGCAATGGAACTAGCGTTACAGGTAGCTGGTTGATGGATGCCTCTCTTCTTTTATTCTAGTAAGATGTTTCATCCCTGAGTCACGAGAAGGGAGCTGACGACCAAGGAGGCTGCTGTTTGTTATGATTAAGATAATACACCACAGAAGCTGATTTTCTGGGTTCAGTCTTGGATCTCACATGTATTAGTGTGATCTTGGACAATTACTTAACTCCTATGTCCCTGCTTTTTCAGCTGGAAAATGCTATTAAGAATGCACATGTCATAGGGTTGTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4583 CDKN2A::PTPRD ENSG00000147889.18::ENSG00000153707.19 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 772 TRUE 276 CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- PTPRD ENSG00000153707.19 protein_coding - - chr9:8314246-10613002:- chr9:10341017:- chr9:8314246-10613002:- chr9:10341017:- chr9:21986042,chr9:21986046 chr9:10522248,chr9:10522249 NA NA chr9:21986041,chr9:21986045 chr9:10522248,chr9:10522249 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Cyclin-dependent_kinase_inhibitor_2a_p19Arf_N-terminus(100%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein-tyrosine_phosphatase(100%) P19Arf_N(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),Y_phosphatase(100%),fn3(100%) 19 0 39 1844 22 ENST00000530628.2 ENST00000381196.9 upstream downstream duplicates(16),low_entropy(2),mismatches(5) TGGCGCTGCTCACCTCTGGTGCCAAAGGGCGGCGCAGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GTGAAGAAGTGAAGAATCAAGGAAGTAAAGGACCTGTCTCAAAGTCACACAACTA___GGAAATCTTGAGGAGTCTGATACTTTTCATCCTCCAGCTATAAAATCATCTTGTAGGGGGAAGCTGTACATTG___GTTTTGAACTTCTTGAGGCCAGG MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|geevknqgskgpvskshn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE protein tyrosine phosphatase, receptor type D 2 lung cancer, kidney cancer, HNSCC, glioblastoma epithelial, other TSG large_deletion, nonsense, missense 4584 CDKN2A::PTPRD ENSG00000147889.18::ENSG00000153707.19 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 772 TRUE 276 CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- PTPRD ENSG00000153707.19 protein_coding - - chr9:8314246-10613002:- chr9:10033790:- chr9:8314246-10613002:- chr9:10033790:- chr9:21986042,chr9:21986046 chr9:10522248,chr9:10522249 NA NA chr9:21986041,chr9:21986045 chr9:10522248,chr9:10522249 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Cyclin-dependent_kinase_inhibitor_2a_p19Arf_N-terminus(100%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein-tyrosine_phosphatase(100%) P19Arf_N(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),Y_phosphatase(100%),fn3(100%) 4 1 24 1844 66 ENST00000530628.2 ENST00000381196.9 upstream downstream duplicates(6),mismatches(1) GCGCT?CTCACCTCTGGTGCCAAAGGGCGGCGCAGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GGAAATCTTGAGGAGTCTGATACTTTTCATCCTCCAGCTATAAAATCATCTTGTAGGGGGAAGCTGTACATTG___GTTTTGAACTTCTTGAGGCCAGGGACTGTGTCTGAAAACACCGACGGTGGCTAACTCAAG___GGAGACGTCTGGTGAACACCCG MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|gks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE protein tyrosine phosphatase, receptor type D 2 lung cancer, kidney cancer, HNSCC, glioblastoma epithelial, other TSG large_deletion, nonsense, missense 4585 PVT1::ENSG00000253427 ENSG00000249859.14::ENSG00000253427.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 395 TRUE 773 TRUE 277 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000253427 ENSG00000253427.1 lncRNA + + chr8:126474189-126492596:+ chr8:126492365:+ chr8:127486434-127504841:+ chr8:127504610:+ chr8:127945985,chr8:127945985,chr8:127945985 chr8:126485547,chr8:126485518,chr8:126485564 NA NA chr8:128958231,chr8:128958231,chr8:128958231 chr8:127497792,chr8:127497763,chr8:127497809 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 12 12 29 1712 137 ENST00000651587.1 ENST00000520171.1 downstream upstream duplicates(7),mismatches(3) TGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GGTATACTATAATCTTCCTGGAATAAGAATATGGATTACACAAAGTTTATACTCAATAAATACTTGAGAAGGGAAGAAAGGGACTAAGGGAGGAGAGAAGAGAAAGAGGAGGAAAAAGAAGAAAATAGGTTTAAAGGAAAGAAAGGAAGAGATGGAAAAAAAGTTTCTCACAAACACAGAGGCTCCAGCTCTGAGTTGAGGCACCAGTTGAGAACAATAGGAAAAAGCAAGTCCAAACTGGAAAAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4586 PVT1::ENSG00000253427 ENSG00000249859.14::ENSG00000253427.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 773 TRUE 277 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902539:+ chr8:128806772-129199347:+ chr8:128914785:+ ENSG00000253427 ENSG00000253427.1 lncRNA + + chr8:126474189-126492596:+ chr8:126492365:+ chr8:127486434-127504841:+ chr8:127504610:+ chr8:127945985,chr8:127945985,chr8:127945985 chr8:126485547,chr8:126485518,chr8:126485564 NA NA chr8:128958231,chr8:128958231,chr8:128958231 chr8:127497792,chr8:127497763,chr8:127497809 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 2 29 27 137 ENST00000657297.1 ENST00000520171.1 downstream upstream duplicates(4) TTGAAGTTTGGAGTATGATTGAACTCATCACGCAG|GGTATACTATAATCTTCCTGGAATAAGAATATGGATTACACAAAGTTTATACTCAATAAATACTTGAGAAGGGAAGAAAGGGACTAAGGGAGGAGAGAAGAGAAAGAGGAGGAAAAAGAAGAAAATAGGTTTAAAGGAAAGAAAGGAAGAGATGGAAAAAAAGTTTCTCACAAACACAGAGGCTCCAGCTCTGAGTTGAGGCACCAGTTGAGAACAATAGGAAAAAGCAAGTCCAAACTGGAAAAACCCACAGCAATATGTGGAACTAAACAAAGCCCAAATACCATGTCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4587 PVT1::ENSG00000253427 ENSG00000249859.14::ENSG00000253427.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 773 TRUE 277 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000253427 ENSG00000253427.1 lncRNA + + chr8:126474189-126492596:+ chr8:126487547:+ chr8:127486434-127504841:+ chr8:127499792:+ chr8:127945985,chr8:127945985,chr8:127945985 chr8:126485547,chr8:126485518,chr8:126485564 NA NA chr8:128958231,chr8:128958231,chr8:128958231 chr8:127497792,chr8:127497763,chr8:127497809 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 37 1712 72 ENST00000651587.1 ENST00000520171.1 downstream upstream duplicates(4) TCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|ATGGGACTTTCTCCTCCTTGCCTTCCACCATGATTGTGAGGCTTCCCCAGCCACGTGGAACAGCCAATTGGAACAACTGGAACT___GGTATACTATAATCTTCCTGGAATAAGAATATGGATTACACAAAGTTTATACTCAATAAATACTTGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4588 PCAT1::PVT1 ENSG00000253438.5::ENSG00000249859.14 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:126590975:- chr8:127568568-128431295:+ chr8:127603220:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563527,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126563419,chr8:126589217,chr8:126563421,chr8:126589219,chr8:126589219 chr8:127808042,chr8:127808044,chr8:127808041,chr8:127808039,chr8:127808037,chr8:127808036,chr8:127808034,chr8:127808051,chr8:127808033,chr8:127808032,chr8:127808071,chr8:127808031,chr8:127808030,chr8:127808029,chr8:127808028,chr8:127808027,chr8:127808024,chr8:127808049,chr8:127808023,chr8:127808025,chr8:127808022,chr8:127808021,chr8:127808020,chr8:127808019,chr8:127808076,chr8:127808040,chr8:127808064,chr8:127808017,chr8:127808016,chr8:127808021,chr8:127808079,chr8:127808078,chr8:127808077,chr8:127808073,chr8:127808072,chr8:127808074,chr8:127808070,chr8:127808069,chr8:127808068,chr8:127808065,chr8:127808066,chr8:127808063,chr8:127808062,chr8:127808059,chr8:127808060,chr8:127808058,chr8:127808057,chr8:127808056,chr8:127808054,chr8:127808053,chr8:127808052,chr8:127808050,chr8:127808048,chr8:127808046,chr8:127808045,chr8:127808043,chr8:127880825,chr8:127808102,chr8:127880823,chr8:127880520 NA NA chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575772,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127575664,chr8:127601462,chr8:127575666,chr8:127601464,chr8:127601464 chr8:128820288,chr8:128820290,chr8:128820287,chr8:128820285,chr8:128820283,chr8:128820282,chr8:128820280,chr8:128820297,chr8:128820279,chr8:128820278,chr8:128820317,chr8:128820277,chr8:128820276,chr8:128820275,chr8:128820274,chr8:128820273,chr8:128820270,chr8:128820295,chr8:128820269,chr8:128820271,chr8:128820268,chr8:128820267,chr8:128820266,chr8:128820265,chr8:128820322,chr8:128820286,chr8:128820310,chr8:128820263,chr8:128820262,chr8:128820267,chr8:128820325,chr8:128820324,chr8:128820323,chr8:128820319,chr8:128820318,chr8:128820320,chr8:128820316,chr8:128820315,chr8:128820314,chr8:128820311,chr8:128820312,chr8:128820309,chr8:128820308,chr8:128820305,chr8:128820306,chr8:128820304,chr8:128820303,chr8:128820302,chr8:128820300,chr8:128820299,chr8:128820298,chr8:128820296,chr8:128820294,chr8:128820292,chr8:128820291,chr8:128820289,chr8:128893071,chr8:128820348,chr8:128893069,chr8:128892766 NA NA antisense sense unknown intron exon/splice-site inversion/3'-3' high none none none 2 43 0 27 1819 unknown ENST00000651587.1 upstream upstream duplicates(2),mismatches(4) GAGtAAATAGCTATTTGTTGGTCAACTGAAGAACTGCGCATGAGGGAGTGAAAGAAACAGAG|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4589 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 774 TRUE 278 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890792:+ chr8:128806772-129199347:+ chr8:128903038:+ PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:126591036:- chr8:127568568-128431295:+ chr8:127603281:- chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128008765,chr8:128015771,chr8:128015722,chr8:128015715,chr8:128015740,chr8:128015748,chr8:128015741,chr8:128015722,chr8:127908620,chr8:128008568,chr8:128008597 chr8:127038390,chr8:127038391,chr8:127038392,chr8:127038393,chr8:127038394,chr8:127038395,chr8:127038396,chr8:127038389,chr8:127038399,chr8:127038400,chr8:127038401,chr8:127038402,chr8:127038403,chr8:127038404,chr8:127038405,chr8:127038406,chr8:127038407,chr8:127038409,chr8:127038410,chr8:127038411,chr8:127038412,chr8:127038413,chr8:127038414,chr8:127038416,chr8:127038397,chr8:127038385,chr8:127038415,chr8:127038417,chr8:127038418,chr8:127038419,chr8:127038420,chr8:127038421,chr8:127038422,chr8:127038423,chr8:127038424,chr8:127038425,chr8:127038426,chr8:127038427,chr8:127038428,chr8:127038429,chr8:127038430,chr8:127038431,chr8:127038432,chr8:127038433,chr8:127038434,chr8:127038435,chr8:127038436,chr8:127038437,chr8:127038438,chr8:127038439,chr8:127038440,chr8:127038441,chr8:127038442,chr8:127038443,chr8:127038444,chr8:127038445,chr8:127038388,chr8:127038408,chr8:127038446,chr8:127038447,chr8:127038448,chr8:127038449,chr8:127038450,chr8:127038451,chr8:127038452,chr8:127038380,chr8:127038381,chr8:127038382,chr8:127038383,chr8:127038386,chr8:127038387,chr8:126693913,chr8:126693891,chr8:126693891,chr8:126693891,chr8:126693891,chr8:126693942,chr8:126693956,chr8:127147448,chr8:127038369,chr8:127038369 NA NA chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129021011,chr8:129028017,chr8:129027968,chr8:129027961,chr8:129027986,chr8:129027994,chr8:129027987,chr8:129027968,chr8:128920866,chr8:129020814,chr8:129020843 chr8:128050635,chr8:128050636,chr8:128050637,chr8:128050638,chr8:128050639,chr8:128050640,chr8:128050641,chr8:128050634,chr8:128050644,chr8:128050645,chr8:128050646,chr8:128050647,chr8:128050648,chr8:128050649,chr8:128050650,chr8:128050651,chr8:128050652,chr8:128050654,chr8:128050655,chr8:128050656,chr8:128050657,chr8:128050658,chr8:128050659,chr8:128050661,chr8:128050642,chr8:128050630,chr8:128050660,chr8:128050662,chr8:128050663,chr8:128050664,chr8:128050665,chr8:128050666,chr8:128050667,chr8:128050668,chr8:128050669,chr8:128050670,chr8:128050671,chr8:128050672,chr8:128050673,chr8:128050674,chr8:128050675,chr8:128050676,chr8:128050677,chr8:128050678,chr8:128050679,chr8:128050680,chr8:128050681,chr8:128050682,chr8:128050683,chr8:128050684,chr8:128050685,chr8:128050686,chr8:128050687,chr8:128050688,chr8:128050689,chr8:128050690,chr8:128050633,chr8:128050653,chr8:128050691,chr8:128050692,chr8:128050693,chr8:128050694,chr8:128050695,chr8:128050696,chr8:128050697,chr8:128050625,chr8:128050626,chr8:128050627,chr8:128050628,chr8:128050631,chr8:128050632,chr8:127706158,chr8:127706136,chr8:127706136,chr8:127706136,chr8:127706136,chr8:127706187,chr8:127706201,chr8:128159693,chr8:128050614,chr8:128050614 NA NA sense antisense unknown exon intron inversion/3'-3' medium none none none 46 10 0 2763 22 ENST00000667305.1 unknown downstream downstream mismatches(1) GGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAG|GAGtAAATAGCTATTTGTTGGTCAACTGAAGAACTGCGCATGAGGGAGTGAAAGAAACAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4590 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 774 TRUE 278 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127847636:+ chr8:128806772-129199347:+ chr8:128859882:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126750624:+ chr8:127568568-128431295:+ chr8:127762869:+ chr8:128015771,chr8:127880898,chr8:127880890,chr8:127880900,chr8:127880848,chr8:127880901,chr8:127880902,chr8:127880899,chr8:127880903,chr8:127880872,chr8:127880834,chr8:127880835,chr8:127880836,chr8:127880838,chr8:127880839,chr8:127880841,chr8:127880842,chr8:127880843,chr8:127880847,chr8:127880849,chr8:127880853,chr8:127880855,chr8:127880857,chr8:127880858,chr8:127880859,chr8:127880846,chr8:127880851,chr8:127880862,chr8:127880845,chr8:127880867,chr8:127880868,chr8:127880873,chr8:127880874,chr8:127880877,chr8:127880876,chr8:127880875,chr8:127880869,chr8:127880878,chr8:127880879,chr8:127880880,chr8:127880881,chr8:127880882,chr8:127880884,chr8:127880861,chr8:127880887,chr8:127880885,chr8:127880888,chr8:127880891,chr8:127880892,chr8:127880894,chr8:127880895,chr8:127880896,chr8:127880897,chr8:127848785,chr8:127848794,chr8:127848777,chr8:127848775,chr8:127848795,chr8:127848796,chr8:127848797,chr8:127848800,chr8:127848801,chr8:127848802,chr8:127848803,chr8:127848804,chr8:127848738,chr8:127848740,chr8:127848741,chr8:127848743,chr8:127848745,chr8:127848747,chr8:127848746,chr8:127848749,chr8:127848750,chr8:127848751,chr8:127848752,chr8:127848753,chr8:127848754,chr8:127848755,chr8:127848756,chr8:127848757,chr8:127848758,chr8:127848759,chr8:127848760,chr8:127848763,chr8:127848764,chr8:127848765,chr8:127848766,chr8:127848768,chr8:127848769,chr8:127848770,chr8:127848773,chr8:127848780,chr8:127848786,chr8:127848788,chr8:127848789,chr8:127848783,chr8:127848790,chr8:127848791,chr8:128015689,chr8:127985179,chr8:127880768,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794 chr8:126693892,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126694012,chr8:126718503,chr8:126589219,chr8:126590978,chr8:126590974,chr8:126590973,chr8:126590971,chr8:126590967,chr8:126590964,chr8:126590957 NA NA chr8:129028017,chr8:128893144,chr8:128893136,chr8:128893146,chr8:128893094,chr8:128893147,chr8:128893148,chr8:128893145,chr8:128893149,chr8:128893118,chr8:128893080,chr8:128893081,chr8:128893082,chr8:128893084,chr8:128893085,chr8:128893087,chr8:128893088,chr8:128893089,chr8:128893093,chr8:128893095,chr8:128893099,chr8:128893101,chr8:128893103,chr8:128893104,chr8:128893105,chr8:128893092,chr8:128893097,chr8:128893108,chr8:128893091,chr8:128893113,chr8:128893114,chr8:128893119,chr8:128893120,chr8:128893123,chr8:128893122,chr8:128893121,chr8:128893115,chr8:128893124,chr8:128893125,chr8:128893126,chr8:128893127,chr8:128893128,chr8:128893130,chr8:128893107,chr8:128893133,chr8:128893131,chr8:128893134,chr8:128893137,chr8:128893138,chr8:128893140,chr8:128893141,chr8:128893142,chr8:128893143,chr8:128861031,chr8:128861040,chr8:128861023,chr8:128861021,chr8:128861041,chr8:128861042,chr8:128861043,chr8:128861046,chr8:128861047,chr8:128861048,chr8:128861049,chr8:128861050,chr8:128860984,chr8:128860986,chr8:128860987,chr8:128860989,chr8:128860991,chr8:128860993,chr8:128860992,chr8:128860995,chr8:128860996,chr8:128860997,chr8:128860998,chr8:128860999,chr8:128861000,chr8:128861001,chr8:128861002,chr8:128861003,chr8:128861004,chr8:128861005,chr8:128861006,chr8:128861009,chr8:128861010,chr8:128861011,chr8:128861012,chr8:128861014,chr8:128861015,chr8:128861016,chr8:128861019,chr8:128861026,chr8:128861032,chr8:128861034,chr8:128861035,chr8:128861029,chr8:128861036,chr8:128861037,chr8:129027935,chr8:128997425,chr8:128893014,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040 chr8:127706137,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127706257,chr8:127730748,chr8:127601464,chr8:127603223,chr8:127603219,chr8:127603218,chr8:127603216,chr8:127603212,chr8:127603209,chr8:127603202 NA NA sense sense unknown intron intron duplication medium none none none 1 1 17 32 16 unknown unknown downstream upstream duplicates(3),low_entropy(5),mismappers(1),mismatches(1) AAAGCTGTGTTGCTGGACGGAATGCAAGTGGATGTGGCCCTTTGGGAAGAATTATGGCCTTTTGGCATTCTCTATCCAAACTACAAAAGCATGTGCCCTTTGACCTGGCCATCTCATGTTGGGACATTGGGATATTTCCCCTACAGAGATAACCTATAGATATTTGTAGGAAAAGAACAGTGCCCAAGGTTATTCATGGAACATTTTTATAAAAGCAAAAGACTGGGAGTAACTCAAACATCTGTGAGTTGAAGACTGGCAAATGATGACACATTGTGCTAGGCAAGATGCGGA|ATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGCCTTATACTCATGTTCTCCCTAGTGATGATTCCACTGTGCCATGCTTTGTATCTGCTCCATCACAAAAAAATTCTGTCATTTGCAAAAACATTGGTTATTCTGGAGGACTTTATGCTAAATGAAATAAGCCAGACAACAGGAAGACAAATACTACATGATCTCACTTATATGTGGAATCTAAAAAGTCAAATCTATAAACATAGAGACTAGGATGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4591 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 774 TRUE 278 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796009:+ chr8:128806772-129199347:+ chr8:128808255:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127880768,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127890794,chr8:127808097,chr8:127808140,chr8:127808337,chr8:127808517,chr8:127908620,chr8:128008765,chr8:128008765,chr8:128015771,chr8:127808097,chr8:127808039,chr8:127880898,chr8:127880890,chr8:127880900,chr8:127880848,chr8:127880901,chr8:127880902,chr8:127880899,chr8:127880903,chr8:127880872,chr8:127880834,chr8:127880835,chr8:127880836,chr8:127880838,chr8:127880839,chr8:127880841,chr8:127880842,chr8:127880843,chr8:127880847,chr8:127880849,chr8:127880853,chr8:127880855,chr8:127880857,chr8:127880858,chr8:127880859,chr8:127880846,chr8:127880851,chr8:127880862,chr8:127880845,chr8:127880867,chr8:127880868,chr8:127880873,chr8:127880874,chr8:127880877,chr8:127880876,chr8:127880875,chr8:127880869,chr8:127880878,chr8:127880879,chr8:127880880,chr8:127880881,chr8:127880882,chr8:127880884,chr8:127880861,chr8:127880887,chr8:127880885,chr8:127880888,chr8:127880891,chr8:127880892,chr8:127880894,chr8:127880895,chr8:127880896,chr8:127880897,chr8:127848785,chr8:127848794,chr8:127848777,chr8:127848775,chr8:127848795,chr8:127848796,chr8:127848797,chr8:127848800,chr8:127848801,chr8:127848802,chr8:127848803,chr8:127848804,chr8:127848738,chr8:127848740,chr8:127848741,chr8:127848743,chr8:127848745,chr8:127848747,chr8:127848746,chr8:127848749,chr8:127848750,chr8:127848751,chr8:127848752,chr8:127848753,chr8:127848754,chr8:127848755,chr8:127848756,chr8:127848757,chr8:127848758,chr8:127848759,chr8:127848760,chr8:127848763,chr8:127848764,chr8:127848765,chr8:127848766,chr8:127848768,chr8:127848769,chr8:127848770,chr8:127848773,chr8:127848780,chr8:127848786,chr8:127848788,chr8:127848789,chr8:127848783,chr8:127848790,chr8:127848791,chr8:128015689,chr8:127985179,chr8:127847638,chr8:127847638,chr8:127848080,chr8:127847638,chr8:127847638,chr8:127847638,chr8:127824916,chr8:127824891,chr8:128008537,chr8:128008765,chr8:128008764,chr8:128008766,chr8:127856511 chr8:126589219,chr8:126590978,chr8:126590974,chr8:126590973,chr8:126590971,chr8:126590967,chr8:126590964,chr8:126590957,chr8:126563422,chr8:126563487,chr8:126563421,chr8:126563603,chr8:127147422,chr8:127038371,chr8:127038372,chr8:126693892,chr8:126563419,chr8:126563527,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126589217,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126639356,chr8:126694012,chr8:126718503,chr8:126750626,chr8:126750628,chr8:126750625,chr8:126750623,chr8:126750625,chr8:126750621,chr8:126862396,chr8:126862433,chr8:127038346,chr8:127038368,chr8:127038368,chr8:127038370,chr8:126818240 NA NA chr8:128893014,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128903040,chr8:128820343,chr8:128820386,chr8:128820583,chr8:128820763,chr8:128920866,chr8:129021011,chr8:129021011,chr8:129028017,chr8:128820343,chr8:128820285,chr8:128893144,chr8:128893136,chr8:128893146,chr8:128893094,chr8:128893147,chr8:128893148,chr8:128893145,chr8:128893149,chr8:128893118,chr8:128893080,chr8:128893081,chr8:128893082,chr8:128893084,chr8:128893085,chr8:128893087,chr8:128893088,chr8:128893089,chr8:128893093,chr8:128893095,chr8:128893099,chr8:128893101,chr8:128893103,chr8:128893104,chr8:128893105,chr8:128893092,chr8:128893097,chr8:128893108,chr8:128893091,chr8:128893113,chr8:128893114,chr8:128893119,chr8:128893120,chr8:128893123,chr8:128893122,chr8:128893121,chr8:128893115,chr8:128893124,chr8:128893125,chr8:128893126,chr8:128893127,chr8:128893128,chr8:128893130,chr8:128893107,chr8:128893133,chr8:128893131,chr8:128893134,chr8:128893137,chr8:128893138,chr8:128893140,chr8:128893141,chr8:128893142,chr8:128893143,chr8:128861031,chr8:128861040,chr8:128861023,chr8:128861021,chr8:128861041,chr8:128861042,chr8:128861043,chr8:128861046,chr8:128861047,chr8:128861048,chr8:128861049,chr8:128861050,chr8:128860984,chr8:128860986,chr8:128860987,chr8:128860989,chr8:128860991,chr8:128860993,chr8:128860992,chr8:128860995,chr8:128860996,chr8:128860997,chr8:128860998,chr8:128860999,chr8:128861000,chr8:128861001,chr8:128861002,chr8:128861003,chr8:128861004,chr8:128861005,chr8:128861006,chr8:128861009,chr8:128861010,chr8:128861011,chr8:128861012,chr8:128861014,chr8:128861015,chr8:128861016,chr8:128861019,chr8:128861026,chr8:128861032,chr8:128861034,chr8:128861035,chr8:128861029,chr8:128861036,chr8:128861037,chr8:129027935,chr8:128997425,chr8:128859884,chr8:128859884,chr8:128860326,chr8:128859884,chr8:128859884,chr8:128859884,chr8:128837162,chr8:128837137,chr8:129020783,chr8:129021011,chr8:129021010,chr8:129021012,chr8:128868757 chr8:127601464,chr8:127603223,chr8:127603219,chr8:127603218,chr8:127603216,chr8:127603212,chr8:127603209,chr8:127603202,chr8:127575667,chr8:127575732,chr8:127575666,chr8:127575848,chr8:128159667,chr8:128050616,chr8:128050617,chr8:127706137,chr8:127575664,chr8:127575772,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127601462,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127651601,chr8:127706257,chr8:127730748,chr8:127762871,chr8:127762873,chr8:127762870,chr8:127762868,chr8:127762870,chr8:127762866,chr8:127874641,chr8:127874678,chr8:128050591,chr8:128050613,chr8:128050613,chr8:128050615,chr8:127830485 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 1 1 279 13 ENST00000651587.1 ENST00000646670.1 downstream upstream none AGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTtCATCTTGGAGG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCT...ATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4592 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 396 TRUE 775 TRUE 279 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ chr8:127913031,chr8:127913031,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:127913028,chr8:127913028 chr8:125891031,chr8:125891029,chr8:125734079,chr8:125734109,chr8:125734099,chr8:125734092,chr8:125734077,chr8:125734086,chr8:125734078,chr8:125734076,chr8:125734075,chr8:125734074,chr8:125734121,chr8:125734071,chr8:125734089,chr8:125734070,chr8:125734069,chr8:125734068,chr8:125734067,chr8:125734106,chr8:125734098,chr8:125734064,chr8:125734063,chr8:125734062,chr8:125734061,chr8:125734060,chr8:125734059,chr8:125734058,chr8:125734057,chr8:125734056,chr8:125734055,chr8:125734053,chr8:125734052,chr8:125734051,chr8:125734117,chr8:125734123,chr8:125734122,chr8:125734119,chr8:125734113,chr8:125734112,chr8:125734110,chr8:125734107,chr8:125734105,chr8:125734111,chr8:125734102,chr8:125734101,chr8:125734100,chr8:125734097,chr8:125734096,chr8:125734094,chr8:125734103,chr8:125734093,chr8:125734091,chr8:125734090,chr8:125734115,chr8:125734088,chr8:125734087,chr8:125734084,chr8:125734095,chr8:125734083,chr8:125734082,chr8:125734085,chr8:125734081,chr8:125734114,chr8:125734080,chr8:125891023,chr8:125891025 NA NA chr8:128925277,chr8:128925277,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:128925274,chr8:128925274 chr8:126903275,chr8:126903273,chr8:126746323,chr8:126746353,chr8:126746343,chr8:126746336,chr8:126746321,chr8:126746330,chr8:126746322,chr8:126746320,chr8:126746319,chr8:126746318,chr8:126746365,chr8:126746315,chr8:126746333,chr8:126746314,chr8:126746313,chr8:126746312,chr8:126746311,chr8:126746350,chr8:126746342,chr8:126746308,chr8:126746307,chr8:126746306,chr8:126746305,chr8:126746304,chr8:126746303,chr8:126746302,chr8:126746301,chr8:126746300,chr8:126746299,chr8:126746297,chr8:126746296,chr8:126746295,chr8:126746361,chr8:126746367,chr8:126746366,chr8:126746363,chr8:126746357,chr8:126746356,chr8:126746354,chr8:126746351,chr8:126746349,chr8:126746355,chr8:126746346,chr8:126746345,chr8:126746344,chr8:126746341,chr8:126746340,chr8:126746338,chr8:126746347,chr8:126746337,chr8:126746335,chr8:126746334,chr8:126746359,chr8:126746332,chr8:126746331,chr8:126746328,chr8:126746339,chr8:126746327,chr8:126746326,chr8:126746329,chr8:126746325,chr8:126746358,chr8:126746324,chr8:126903267,chr8:126903269 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 13 12 17 1712 50 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(4),mismatches(1) ACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG___GCTAAGGTGTTCTATCTTCAGCAAAAAGGAACAATCTTAGAGTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4593 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 775 TRUE 279 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657 chr8:125734079,chr8:125734109,chr8:125734099,chr8:125734092,chr8:125734077,chr8:125734086,chr8:125734078,chr8:125734076,chr8:125734075,chr8:125734074,chr8:125734121,chr8:125734071,chr8:125734089,chr8:125734070,chr8:125734069,chr8:125734068,chr8:125734067,chr8:125734106,chr8:125734098,chr8:125734064,chr8:125734063,chr8:125734062,chr8:125734061,chr8:125734060,chr8:125734059,chr8:125734058,chr8:125734057,chr8:125734056,chr8:125734055,chr8:125734053,chr8:125734052,chr8:125734051,chr8:125734117,chr8:125734123,chr8:125734122,chr8:125734119,chr8:125734113,chr8:125734112,chr8:125734110,chr8:125734107,chr8:125734105,chr8:125734111,chr8:125734102,chr8:125734101,chr8:125734100,chr8:125734097,chr8:125734096,chr8:125734094,chr8:125734103,chr8:125734093,chr8:125734091,chr8:125734090,chr8:125734115,chr8:125734088,chr8:125734087,chr8:125734084,chr8:125734095,chr8:125734083,chr8:125734082,chr8:125734085,chr8:125734081,chr8:125734114,chr8:125734080 NA NA chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903 chr8:126746323,chr8:126746353,chr8:126746343,chr8:126746336,chr8:126746321,chr8:126746330,chr8:126746322,chr8:126746320,chr8:126746319,chr8:126746318,chr8:126746365,chr8:126746315,chr8:126746333,chr8:126746314,chr8:126746313,chr8:126746312,chr8:126746311,chr8:126746350,chr8:126746342,chr8:126746308,chr8:126746307,chr8:126746306,chr8:126746305,chr8:126746304,chr8:126746303,chr8:126746302,chr8:126746301,chr8:126746300,chr8:126746299,chr8:126746297,chr8:126746296,chr8:126746295,chr8:126746361,chr8:126746367,chr8:126746366,chr8:126746363,chr8:126746357,chr8:126746356,chr8:126746354,chr8:126746351,chr8:126746349,chr8:126746355,chr8:126746346,chr8:126746345,chr8:126746344,chr8:126746341,chr8:126746340,chr8:126746338,chr8:126746347,chr8:126746337,chr8:126746335,chr8:126746334,chr8:126746359,chr8:126746332,chr8:126746331,chr8:126746328,chr8:126746339,chr8:126746327,chr8:126746326,chr8:126746329,chr8:126746325,chr8:126746358,chr8:126746324 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 18 519 50 ENST00000667305.1 ENST00000651999.1 downstream upstream mismatches(1) ATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG___AGTTTCACTCTTTCGCACAGGTGGGAGTTCAGTGGCACAATCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4596 CCDC88A::CLHC1 ENSG00000115355.18::ENSG00000162994.16 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 776 TRUE 280 CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55388778:- chr2:55514978-55647031:- chr2:55615914:- CLHC1 ENSG00000162994.16 protein_coding - - chr2:55172547-55232563:- chr2:55181744:- chr2:55399683-55459699:- chr2:55408880:- chr2:55386622,chr2:55386624 chr2:55205815,chr2:55205814 NA NA chr2:55613758,chr2:55613760 chr2:55432951,chr2:55432950 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none HOOK_domain(50%)|Clathrin-H-link(32%) HOOK_N(47%)|Clathrin_H_link(0%) 0 3 13 47 32 ENST00000263630.13 ENST00000428621.5 upstream downstream duplicates(1),mismatches(1),multimappers(1) GGGGTATTCTTGAACCAGGTCATGCTCCAAAT___TAATCCTAAATTGGAGAGTCAGAGAGTAAATAAAAAAGTCAATAATGATGCCTCACTTAGAATGCACAATCTATCCATTTTGGTGAGACAGATAAAATTTTATTACCAG|CTGTTGGAAAAATTAGAGGAAAGCCTCTTCCATTACTCTTATTTTTTGAGGCCCTCTTTATCACAAGTCATGCTTTTCCATGTCCTGTTGATGCAGCTCTAACCCTGGAAGGAATCAAATGTGGATTATCAGAAAAACGGTTAGATTTAGTTACCAATTGGGTTACACAGGAAAG___ACTGACATTTTCTGAGGAGGCTGGGGATGTGATTTGTGATTATGGGGAGCAGGATACTTATAACAAGGCCAAGTGCCTGGCTTTAGCTCAGATTaTCTACAGTGAATGTGGCC GVFLNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQ|LLEKLEESLFHYSYFLRPSLSQVMLFHVLLMQL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4597 CCDC88A::CLHC1 ENSG00000115355.18::ENSG00000162994.16 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 776 TRUE 280 CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55388778:- chr2:55514978-55647031:- chr2:55615914:- CLHC1 ENSG00000162994.16 protein_coding - - chr2:55172547-55232563:- chr2:55180712:- chr2:55399683-55459699:- chr2:55407848:- chr2:55386622,chr2:55386624 chr2:55205815,chr2:55205814 NA NA chr2:55613758,chr2:55613760 chr2:55432951,chr2:55432950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none HOOK_domain(50%)| HOOK_N(47%)| 0 1 3 47 56 ENST00000263630.13 ENST00000401408.6 upstream downstream none TCTTGAACCAGGTCATGCTCCAAAT___TAATCCTAAATTGGAGAGTCAGAGAGTAAATAAAAAAGTCAATAATGATGCCTCACTTAGAATGCACAATCTATCCATTTTGGTGAGACAGATAAAATTTTATTACCAG|ACTGACATTTTCTGAGGAGGCTGGGGATGTGATTTGTGATTATGGGGAGCAGGATACTTATAACAAGGCCAAGTGCCTGGCTTTAGCTCAGATTaTCTACAGTGAATGTGGCCTGCACAAGAAAGCTATTCTTTGCTTGTGTAAACAGGGTCAGACTCATAGGGcCATGGAGTACATACAGCAGTTGAAGtACTTTAC...TCTTTATCTTTTGGTCTTGCTATACTTCATCTGTTCTCTGtAGACATGAAAAAAGTTGGCATTAAGCTACTTCAAGAAATCAATAAAGGTGGGATAG___ATGC LNQVMLQINPKLESQRVNKKVNNDASLRMHNLSILVRQIKFYYQ|tdif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4598 CCDC88A::CLHC1 ENSG00000115355.18::ENSG00000162994.16 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 776 TRUE 280 CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55388778:- chr2:55514978-55647031:- chr2:55615914:- CLHC1 ENSG00000162994.16 protein_coding - - chr2:55172547-55232563:- chr2:55177781:- chr2:55399683-55459699:- chr2:55404917:- chr2:55386622,chr2:55386624 chr2:55205815,chr2:55205814 NA NA chr2:55613758,chr2:55613760 chr2:55432951,chr2:55432950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none HOOK_domain(50%)| HOOK_N(47%)| 0 1 0 47 65 ENST00000263630.13 ENST00000401408.6 upstream downstream none TGATGCCTCACTTAGAATGCACAATCTATCCATTTTGGTGAGACAGATAAAATTTTATTACCAG|ATGACCTGTTGCAGCTATTAATGTCATGTCCCCAAGT...GGCTTTGACAAATTATCTAATGACATCACGTCTATTCTTCGATCTCAGGCTGCAGTTACAGAAATTTCTGAAGAGGATGACGCAGTCAACCTAATGGAACA DASLRMHNLSILVRQIKFYYQ|mtccsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4599 PCAT1::CASC8 ENSG00000253438.5::ENSG00000246228.7 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589290:+ chr8:127568568-128431295:+ chr8:127601535:+ CASC8 ENSG00000246228.7 lncRNA - + chr8:127289808-127482139:- chr8:127432066:+ chr8:128302053-128494384:- chr8:128444311:+ chr8:126859687,chr8:126859677,chr8:126859688,chr8:126859689,chr8:126859685,chr8:126859690,chr8:126859691,chr8:126859692,chr8:126859676,chr8:126859693,chr8:126859694,chr8:126859684,chr8:126859695,chr8:126859696,chr8:126859697,chr8:126859698,chr8:126859699,chr8:126859700,chr8:126859702,chr8:126859703,chr8:126859704,chr8:126859705,chr8:126859706,chr8:126859673,chr8:126859707,chr8:126859708,chr8:126859709,chr8:126859710,chr8:126859711,chr8:126859712,chr8:126859713,chr8:126859714,chr8:126859716,chr8:126859717,chr8:126859718,chr8:126859719,chr8:126859720,chr8:126859721,chr8:126859722,chr8:126859723,chr8:126859724,chr8:126859725,chr8:126859726,chr8:126859679,chr8:126859727,chr8:126859728,chr8:126859729,chr8:126859730,chr8:126859731,chr8:126859732,chr8:126859733,chr8:126859734,chr8:126859735,chr8:126859686,chr8:126859736,chr8:126859737,chr8:126859738,chr8:126859739,chr8:126859740,chr8:126859741,chr8:126859739,chr8:126859669,chr8:126859670,chr8:126859671,chr8:126859672,chr8:126859674,chr8:126859675,chr8:126859678,chr8:126859680,chr8:126859681,chr8:126859682,chr8:126859683 chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425796,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794,chr8:127425794 NA NA chr8:127871932,chr8:127871922,chr8:127871933,chr8:127871934,chr8:127871930,chr8:127871935,chr8:127871936,chr8:127871937,chr8:127871921,chr8:127871938,chr8:127871939,chr8:127871929,chr8:127871940,chr8:127871941,chr8:127871942,chr8:127871943,chr8:127871944,chr8:127871945,chr8:127871947,chr8:127871948,chr8:127871949,chr8:127871950,chr8:127871951,chr8:127871918,chr8:127871952,chr8:127871953,chr8:127871954,chr8:127871955,chr8:127871956,chr8:127871957,chr8:127871958,chr8:127871959,chr8:127871961,chr8:127871962,chr8:127871963,chr8:127871964,chr8:127871965,chr8:127871966,chr8:127871967,chr8:127871968,chr8:127871969,chr8:127871970,chr8:127871971,chr8:127871924,chr8:127871972,chr8:127871973,chr8:127871974,chr8:127871975,chr8:127871976,chr8:127871977,chr8:127871978,chr8:127871979,chr8:127871980,chr8:127871931,chr8:127871981,chr8:127871982,chr8:127871983,chr8:127871984,chr8:127871985,chr8:127871986,chr8:127871984,chr8:127871914,chr8:127871915,chr8:127871916,chr8:127871917,chr8:127871919,chr8:127871920,chr8:127871923,chr8:127871925,chr8:127871926,chr8:127871927,chr8:127871928 chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438041,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039,chr8:128438039 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 0 5 17 317 50 ENST00000645463.1 unknown downstream upstream duplicates(2),mismatches(1),multimappers(1) GGAACAAGCGAGGATCTCAGAGCGCGACCTGGACAG___GCTCTCACAAAAGTCACCGCGTTTGTGTAGGTAACTAAGGCCTACCGAAACCAGTCAGCCCTAAGTGCACACAGGAGAACCATGGAGTTGGAGGAAAAG|CCCGCCTGCACCCAGGTGAAATAAACAGCCATGTTGCTCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCGCATGAAATTTGGTGCTGTGGCTCGGCTCGGGGGACCTCCTTTGGGAGATCAATCCCCTGTCCTCCTGTTCTTTGCTCCATGAGAAACATCCACCTACGACCTCAGGTCCTCAGACCAACCAGCCCAAGAAACATCTCACCAATTTCAAATCCG___GCATGGTTAACGTGGTCAGAATTCTTACACAACAACCAGGACCACACCGTATAGCCTTTCTGTCCAAACAACTTGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4601 DIS3L2::USP40 ENSG00000144535.20::ENSG00000085982.16 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DIS3L2 ENSG00000144535.20 protein_coding + + chr2:231961245-232344350:+ chr2:232024330:+ chr2:232825955-233209060:+ chr2:232889040:+ USP40 ENSG00000085982.16 protein_coding - + chr2:233475526-233566782:- chr2:233541332:+ chr2:234384172-234475428:- chr2:234449978:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Rrp44-like_cold_shock_domain(51%)| Rrp44_CSD1(12%)| 3 2 5 129 6 ENST00000273009.10 unknown downstream upstream mismatches(2) GAGAAGAGTGACCTTGGAGCCAATAATGAGCCATCCTGACTACAGAATGAACCTCCGGCCCCTGGGGACCCCCAGAG___GTGTGTCTGCTGTGGCTGGTCCACATGACATTGGTGCTTCGCCAGGTGACAAAAAGTCAAAGAACAGGTCCACACGAGGGAAGAAAAAGAGCATATTTGAAACTTACATGTCCAAGGAGGATGTTTCAGAAGGCTTGAAGAGAGGAACACTCATCCAG___GGTGTATTGAGAATTAATCCAAAGAAGTTTCATGAAGCCTTCATTCCTTCCCCG|AGTAGGCCCTAAGTAAATCTGATTGGCATTATCATAAGAAGACGAAGTTTGGACAAAGTGACACCAGGGAAGCACACACACAGAAGAAACACCATGTGAGGACACAGGAAGAAGACGGCCATCTGCAAGCCAAGGAGAGAGGCCTCAGAAGAAACCAAAACTGCCAACACCTTAATCTTGGACTTCCAGCCTTCAAAAC MSHPDYRMNLRPLGTPRGVSAVAGPHDIGASPGDKKSKNRSTRGKKKSIFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSP|srp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4604 PARP11::PARP11-AS1 ENSG00000111224.14::ENSG00000256862.5 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PARP11 ENSG00000111224.14 protein_coding - - chr12:3791047-3873448:- chr12:3814037:- chr12:3900213-3982614:- chr12:3923203:- PARP11-AS1 ENSG00000256862.5 lncRNA + - chr12:3871579-3910385:+ chr12:3875131:- chr12:3980745-4019551:+ chr12:3984297:- chr12:3811937,chr12:3811916 chr12:3892353,chr12:3892353 NA NA chr12:3921103,chr12:3921082 chr12:4001519,chr12:4001519 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Poly(ADP-ribose)_polymerase_catalytic_domain(45%),WWE_domain(100%)| PARP(80%),WWE(100%)| 1 1 8 416 6 ENST00000416739.5 unknown upstream downstream none TGCTAATCTCTTTGGGAAGACGATGGATCGCAACCGAATTAAAAGAATTCAGAGAATTCAAAACCTAGATTTGTGGGAGTTCTTTTGCAG___GAAAAAGGCTCAGCTCAAGAAAAAAAGAGGTGTGCCTCAGATTAATGAACAAATGCTGTTTCATGGTACCAGCAGTGAATTTGTGGAAGCAATCTGCATTCATAACTTTGATTGGAGAATAAATGGTATACATGGTGCTGTCTTTGGAAAAG|ATGCTGATGCAGATCTGAAAAAAAATTGTTAATGCATCTAAAGATACAGAAAACAAGTATTTCTGAATGGAAAGACCCATGATATTGAAAATTTTGAAAAAGAAGAGAATTAGGAGAGGTTCCTTTATGAAAAGGCAAATATATTAAATATGTAATGATTATAACTGTGGCATATTTTAGGAATAAGCAGATAATTAATAGAGGAGAATGTTCAGAAACAGATATATACGTGTATGTATACCTATGTATATGTATATGCAAATTTAG...___GAATTAATTCCAAGAAGTAAATGGAC ANLFGKTMDRNRIKRIQRIQNLDLWEFFCRKKAQLKKKRGVPQINEQMLFHGTSSEFVEAICIHNFDWRINGIHGAVFGK|dadadlkknc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4607 ALPK1::PRDM5 ENSG00000073331.18::ENSG00000138738.11 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ALPK1 ENSG00000073331.18 protein_coding + + chr4:112285509-112442621:+ chr4:112315853:+ chr4:113206665-113363777:+ chr4:113237009:+ PRDM5 ENSG00000138738.11 protein_coding - + chr4:120684919-120922870:- chr4:120875819:+ chr4:121606074-121844025:- chr4:121796974:+ NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 0 4 19 0 ENST00000504176.6 unknown downstream upstream duplicates(1),mismappers(1) CAGAGAGGCTGTACCAGAATTAACTCTGCTCAGAGTTAGATTTGCTGGTCTTAAAGTACTTTTCCTCTTTAAGATAAAA___GAAGTTCTTCTAAATCAGGAATGGATTGAAATCTAATGAACCGAAACTTTGG|a|AAAAAAGCTGCTTACAGGATAGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Alpha-protein kinase 1 Atypical Alpha Q96QP1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4619 LRATD2::CASC11 ENSG00000168672.4::ENSG00000249375.8 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LRATD2 ENSG00000168672.4 protein_coding - - chr8:126552443-126558478:- chr8:126556967:- chr8:127564688-127570723:- chr8:127569212:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127694541:- chr8:128698588-128751233:- chr8:128706786:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS intron duplication medium none Lecithin_retinol_acyltransferase(77%)| LRAT(27%)| 3 10 14 5024 34 ENST00000304916.4 unknown upstream downstream duplicates(1),mismatches(2) GCCGCCTCAGGGGCCAGATGGCGGCGGCTTGCCCGACGGTGGGGACGGGCCGCCGCCGCCCCAGCCGCAGCCCTACGATCCGCGGCTGCACGAGGTGGAATGCTCCGTGTTCTACCGGGACGAATGCATCTACCAGAAGAGCTTCGCGCCGGGCTCGGCGGCGCTGAGTACCTACACGCCCGAGAACCTGCTCAACAAGTGCAAGCCGGGCGATCTGGTGGAGTTCGTGTCGCAGGCTCAGTACCCGCACTGGGCCGTATATGTGGGTAACTTCCAG|CTGGGAGTCACACCTAGGAAATCTGGCTTTTGGTTCCCTGATAGCAAGTGCTCCATGGCAACTTCAAATCTATACACCCCAGGGCTCAAGAGCTGGGGCATGAGGAGCTCTGCATGAGGGTGCAGGACTCTGGGGTGCTCCTGAGTTTGGAGGCAGGGACTCCCGTGAGAAGAGTGCAGGATGTGGAGTCAGGCAGCCTGAATTTTAGATCTGGGCTGTGTCTCAGGACAGTGCCACAGCTCCTCCTTGGGCCTCAGACTTTTTACCTGTGGAATGGGCTGCATAGCCACTTTACAGAGCTGTTATAGACCTGCTG PPQGPDGGGLPDGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGDLVEFVSQAQYPHWAVYVGNFQ|lgvtprksgfwfpdskcsmatsnlytpglkswgmrssa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4626 PCAT1::LINC00861 ENSG00000253438.5::ENSG00000245164.10 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126877864:+ chr8:127568568-128431295:+ chr8:127890109:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126047412:- chr8:126871965-127305033:- chr8:127059656:- chr8:127344679,chr8:126908425,chr8:126908422,chr8:127344422,chr8:127344681,chr8:126908415,chr8:126908410 chr8:126285292,chr8:126052416,chr8:126052417,chr8:126285340,chr8:126285293,chr8:126052426,chr8:126052426 NA NA chr8:128356925,chr8:127920670,chr8:127920667,chr8:128356668,chr8:128356927,chr8:127920660,chr8:127920655 chr8:127297537,chr8:127064660,chr8:127064661,chr8:127297585,chr8:127297538,chr8:127064670,chr8:127064670 NA NA sense sense unknown exon intron inversion medium none none none 2 2 8 79 13 ENST00000689472.2 unknown downstream downstream mismatches(1) CTTGATTCTTGGAATATTCTCTTCGGAGGGGTTGGATTTGAAGGTCGAGTGGAGTTCACTTCAGTCATATATTCTGCCCTGCTT___AGACTGGGACTCCAAGGATCAGCCAGATGAAATGCTATGTGCAGAGTCTTCATTTCCCAGCTCAGTGGTGGACAGCAGAGGACTCTAAGGTGGGTTGCCCTGATTGGAGTCCCCCTTCAGCCACTTTAAGTTAACGGATGTCTCTGAGCTCCAAGTTTCTCAT|CTCAACTAGCAGCCTGAGCGGCCCCACCCTTCCTAGACATAGATTGTGGTGCAGTGAGGCCCTTTCCATTCCATGGCCAAGCAAATCTTCAGGCATTTGGAGCATGAGCTTGCTTGGATCAGCAGCCTGAGCTGCCCTACCATTCCTGTGCAGAGATCCTGGTGCAGGGGTAAGGGGGCCTTTCTGCTACAGGCTTATGCAGATCACTAGGCATTCAGAGTACCTGCTTAATTGGTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4628 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 779 TRUE 281 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127910934,chr8:127910933 chr8:127425938,chr8:127425946 NA NA chr8:128923180,chr8:128923179 chr8:128438183,chr8:128438191 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 1 8 1867 4 ENST00000651587.1 ENST00000501396.5 downstream downstream none TGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4629 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 779 TRUE 281 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127910934,chr8:127910933 chr8:127425938,chr8:127425946 NA NA chr8:128923180,chr8:128923179 chr8:128438183,chr8:128438191 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 7 195 1269 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(1) GTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAA...GCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4642 TSPAN9::PVT1 ENSG00000011105.14::ENSG00000249859.14 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3083719:+ chr12:3186521-3395730:+ chr12:3192885:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127932053:+ chr8:128806772-129199347:+ chr8:128944299:+ chr12:3157388 chr8:127808053 NA NA chr12:3266554 chr8:128820299 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 1 1 4 2444 257 ENST00000011898.10 ENST00000669132.1 downstream upstream none CGGCGGCGGCGGTGCCGGAGCGCGAGCAGAGCGGAGACCCCCAGGTCCTGCGGGCGCG___GAATATCCTGGAACCTTCTTTTGTTTGTCAGCAGCCAAGGTGTTTCCAGGAAGTTCAGAGAGAACAG|ATTCCTGGGAACACCACCATGGAGGGCCTGGCCTTTGGCGGTGGACAGTCTGTGGCTGGGTGGGAACGTCAGGAGTGGGGCCTGCCTCTTTGCTGGGAATGCCGTGCACTCCCAGCCCACTTGCCCCATGCCAGCACTCGAGGCAG___GACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4654 ENSG00000291189::TSPAN9 ENSG00000291189.1::ENSG00000011105.14 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291189 ENSG00000291189.1 lncRNA - - chr12:3296202-3366177:- chr12:3366059:- chr12:3405368-3475343:- chr12:3475225:- TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3201177:+ chr12:3186521-3395730:+ chr12:3310343:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Tetraspanin_family(100%) |Tetraspanin(100%) 0 1 1 271 2499 ENST00000701724.1 ENST00000537971.5 upstream upstream duplicates(1) GCCGTGTGCCGCTGGGTGGCCCTGCGAGCCGCCGCTCTCCGCCTCTCTAGGCTCAGCTTCCATCACCGCGTGGCGGAGCC[c]CGTGTCCGGGCCAG|AATTTAAGAAGTGCAACATGGCCAGGGGCTGCCTCTGCTGCTTGAAGTACATGATGTTCCTCTTCAATTTGATATTCTGG___CTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4687 SGTB::NLN ENSG00000197860.10::ENSG00000123213.23 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 401 TRUE 788 TRUE 282 SGTB ENSG00000197860.10 protein_coding - - chr5:65665928-65723035:- chr5:65708489:- chr5:64961755-65018862:- chr5:65004316:- NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65781261:+ chr5:65018032-65167553:+ chr5:65077088:+ chr5:65706729,chr5:65706731 chr5:65780689,chr5:65780687 NA NA chr5:65002556,chr5:65002558 chr5:65076516,chr5:65076514 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Homodimerisation_domain_of_SGTA(100%),TPR_repeat(0%)|Peptidase_family_M3(100%) SGTA_dimer(100%),TPR_1(0%),TPR_11(0%),TPR_16(0%),TPR_2(0%)|Peptidase_M3(100%) 75 39 106 349 494 ENST00000381007.9 ENST00000380985.10 upstream upstream duplicates(49),mismatches(6) CTTACACCTCGGATGAACAAGAAAGTTTGGAAG___TTGCAATTCAGTGCTTGGAGACAGTTTTTAAGATCAGCCCAGAAGATACACACCTAGCAGTTTCACAGCCTTTGACAGAAATGTTTACCAGTTCCTTCTGTAAG___AATGACGTTCTGCCCCTTTCAAACTCAGTGCCTGAAGATGTGGGAAAAGCTGACCAATTAAAAGATGAAG|GTGCTCTTCCTGATGATTTCATTGACAGTTTAGAAAAGACAGATGATGACAAGTATAAAATTACCTTAAAATATCCACACTATTTCCCTGTCATGAAGAAATGTTGTATCCCTGAAACCAGAAGAAGGATGGAAATGGCTTTTAATACAAGGTGCAAAGAG___GAAAACACCATAATTTTGCAGCAGCTACTCCCACTGCGAACCAAGGTGGCCAAACTACTCGGTTA YTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDE|gALPDDFIDSLEKTDDDKYKITLKYPHYFPVMKKCCIPETRRRMEMAFNTRCKEENTIILQQLLPLRTKVAKLLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4688 SGTB::NLN ENSG00000197860.10::ENSG00000123213.23 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 788 TRUE 282 SGTB ENSG00000197860.10 protein_coding - - chr5:65665928-65723035:- chr5:65712961:- chr5:64961755-65018862:- chr5:65008788:- NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65781261:+ chr5:65018032-65167553:+ chr5:65077088:+ chr5:65706729,chr5:65706731 chr5:65780689,chr5:65780687 NA NA chr5:65002556,chr5:65002558 chr5:65076516,chr5:65076514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Homodimerisation_domain_of_SGTA(100%)|Peptidase_family_M3(100%) SGTA_dimer(100%)|Peptidase_M3(100%) 4 4 51 483 494 ENST00000381007.9 ENST00000380985.10 upstream upstream duplicates(10) TCGTTTCTTACGGGAACAAAGTCAGATGGACACTTACACCTCGGATGAACAAGAAAGTTTGGAAG___TTGCAATTCAGTGCTTGGAGACAGTTTTTAAGATCAGCCCAGAAGATACACACCTAGCAGTTTCACAGCCTTTGACAGAAATGTTTACCAGTTCCTTCTGTAAG|GTGCTCTTCCTGATGATTTCATTGACAGTTTAGAAAAGACAGATGATGACAAGTATAAAATTACCTTAAAATATCCACACTATTTCCCTGTCATGAAGAAATGTTGTATCCCTGAAACCAGAAGAAGGATGGAAATGGCTTTTAATACAAGGTGCAAAGAG___GAAAACACCATAATTTTGCAGCAGCTACTCCCACTGCGAACCAAGGTGGCCAAACTACTCGGTTATAG RFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCK|vlflmisltv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4689 SGTB::NLN ENSG00000197860.10::ENSG00000123213.23 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 788 TRUE 282 SGTB ENSG00000197860.10 protein_coding - - chr5:65665928-65723035:- chr5:65712961:- chr5:64961755-65018862:- chr5:65008788:- NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65785775:+ chr5:65018032-65167553:+ chr5:65081602:+ chr5:65706729,chr5:65706731 chr5:65780689,chr5:65780687 NA NA chr5:65002556,chr5:65002558 chr5:65076516,chr5:65076514 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Homodimerisation_domain_of_SGTA(100%)|Peptidase_family_M3(94%) SGTA_dimer(100%)|Peptidase_M3(94%) 0 1 11 483 537 ENST00000381007.9 ENST00000380985.10 upstream upstream duplicates(1) CAGATGGACACTTACACCTCGGATGAACAAGAAAGTTTGGAAG___TTGCAATTCAGTGCTTGGAGACAGTTTTTAAGATCAGCCCAGAAGATACACACCTAGCAGTTTCACAGCCTTTGACAGAAATGTTTACCAGTTCCTTCTGTAAG|GAAAACACCATAATTTTGCAGCAGCTACTCCCACTGCGAACCAAGGTGGCCAAACTACTCGGTTATAGCACACATGCTGACTTCGTCCTTGAAATGAACACTGCAAAGAGCACAAGCCGCGTAACAGCCTTTCTAG___ATGATTTAAGCCAGAAGTTAAAACCCTTGGGTGAAGCAGAACGAGAGTTTATTTTGAATTTGAAGAAAAAGGAATGCAAAG QMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCK|ENTIILQQLLPLRTKVAKLLGYSTHADFVLEMNTAKSTSRVTAFLDDLSQKLKPLGEAEREFILNLKKKECK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4690 SGTB::NLN ENSG00000197860.10::ENSG00000123213.23 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 788 TRUE 282 SGTB ENSG00000197860.10 protein_coding - - chr5:65665928-65723035:- chr5:65708489:- chr5:64961755-65018862:- chr5:65004316:- NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65785775:+ chr5:65018032-65167553:+ chr5:65081602:+ chr5:65706729,chr5:65706731 chr5:65780689,chr5:65780687 NA NA chr5:65002556,chr5:65002558 chr5:65076516,chr5:65076514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Homodimerisation_domain_of_SGTA(100%),TPR_repeat(0%)|Peptidase_family_M3(94%) SGTA_dimer(100%),TPR_1(0%),TPR_11(0%),TPR_16(0%),TPR_2(0%)|Peptidase_M3(94%) 1 0 23 349 537 ENST00000381007.9 ENST00000380985.10 upstream upstream duplicates(1),mismatches(1) GTTTTTAAGATCAGCCCAGAAGATACACACCTAGCAGTTTCACAGCCTTTGACAGAAATGTTTACCAGTTCCTTCTGTAAG___AATGACGTTCTGCCCCTTTCAAACTCAGTGCCTGAAGATGTGGGAAAAGCTGACCAATTAAAAGATGAAG|GAAAACACCATAATTTTGCAGCAGCTACTCCCACTGCGAACCAAGGTGGCCAAACTACTCGGTTATAGCACACATGCTGACTTCGTCCTTGAAATGAACACTGCAAAGAGCACAAGCCGCGTAACAGCCTTTCTAG___ATGATTTAAGCCAGAAGTTAAAACCCTTGGGTGAAGCAGAACGAGA VFKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDE|gkhhnfaaatptanqggqttrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4691 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 402 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247591:+ chr10:85990422-86019716:+ chr10:86007347:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%) 23 41 140 318 379 ENST00000372088.8 ENST00000652092.2 downstream upstream duplicates(30),low_entropy(8),mismatches(12) GCTGGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|CTCTCTCCGGTCTCAGCCTCAATACCCTGACCATCTTCTCTTTCTGCAAGACCCCGGAGCTGCGGACTCCCTGCCACCTACTGGTGCTGAGCTTGGCTCTTGCGGACAGTGGGATCAGCCTGAATGCCCTCGTTGCAGCCACATCCAGCCTTCTCCG___GCGCTGGCCCTACGGCTCGGACGGCTGCCAGGCTCACGGCTTCCAGGGCTTTGTGACAGCGTTGGCCAGCATCTGCAGCAGTGCAGCCATCGCATGGGGGCGTTATCACCACTACTGCACCC___GTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4692 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 403 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247498:+ chr10:85990422-86019716:+ chr10:86007254:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%) 2 14 154 318 142 ENST00000372088.8 ENST00000650682.1 downstream upstream duplicates(21),mismatches(13) CGGCGGGGCTGGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|GAGGTTGCTGATGTTCCATCCACCCCACACACACTGTTCTGACCCCAGCTGGGCCTCAGCAGCCCCAATGCCAGCCCCCACCCTTCCTTTCAGCTCTCTCCGGTCTCAGCCTCAATACCCTGACCATCTTCTCTTTCTGCAAGACCCCGGAGCTGCGGACTCCCTGCCACCTACTGGTGCTGAGCTTGGCTCTTGCGGACAGTGGGATCAGCCTGAATGCCCTCGTTGCAGCCACATCCAGCCTTCTCCG___GCGCTGGCCCTACGGCTCGGACGGCTGCCAGGCTCACGGCTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4693 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 404 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247641:+ chr10:85990422-86019716:+ chr10:86007397:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(94%) |7tm_1(99%) 5 49 115 318 615 ENST00000372088.8 ENST00000650774.1 downstream upstream duplicates(13),inconsistently_clipped(1),mismatches(8) GGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|ACCCCGGAGCTGCGGACTCCCTGCCACCTACTGGTGCTGAGCTTGGCTCTTGCGGACAGTGGGATCAGCCTGAATGCCCTCGTTGCAGCCACATCCAGCCTTCTCCG___GCGCTGGCCCTACGGCTCGGACGGCTGCCAGGCTCACGGCTTCCAGGGCTTTGTGACAGCGTTGGCCAGCATCTGCAGCAGTGCAGCCATCGCATGGGGGCGTTATCACCA...___GTAGCCAGCTGGCCTGGAACTCAGCCGTCTCTCTGGTGCTCTTCGTGTGGCTGTCTTCTGCCTTCTGGGCAGCTCTGCCCCTTCTGGGTTGGGGTCACTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4694 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 405 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84252857:+ chr10:85990422-86019716:+ chr10:86012613:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(45%) |7tm_1(23%) 6 31 32 318 1049 ENST00000372088.8 ENST00000652092.2 downstream upstream duplicates(6),mismatches(4) GGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|GTAGCCAGCTGGCCTGGAACTCAGCCGTCTCTCTGGTGCTCTTCGTGTGGCTGTCTTCTGCCTTCTGGGCAGCTCTGCCCCTTCTGGGTTGGGGTCACTACGACTATGAGCCACTGGGGACATGCTGCACCCTGGACTACTCCAAGGGGGACAG___AAACTTCACCAGCTTCCTCTTCACCATGTCCTTCTTCAACTTCGCCATGCCCCTCTTCATCACGATCACTTCCTACAGTCTCATGGAGCAGAAACTGGGGAAGAGTGGCCATCTCCAG___...CACTCTGCCAGCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4695 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84248922:+ chr10:85990422-86019716:+ chr10:86008678:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(66%) |7tm_1(80%) 1 6 45 318 645 ENST00000372088.8 ENST00000652092.2 downstream upstream duplicates(10),mismatches(3) GGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|GCGCTGGCCCTACGGCTCGGACGGCTGCCAGGCTCACGGCTTCCAGGGCTTTGTGACAGCGTTGGCCAGCATCTGCAGCAGTGCAGCCATCGCATGGGGGCGTTATCACCACTACTGCACCC___GTAGCCAGCTGGCCTGGAACTCAGCCGTCTCTCTGGTGCTCTTCGTGTGGCTGTCTTCTGCCTTCTGGGCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4697 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84246885:+ chr10:85990422-86019716:+ chr10:86006641:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%) 0 1 154 318 124 ENST00000372088.8 ENST00000478727.6 downstream upstream duplicates(20),mismatches(12) CGGCGGGGCTGGCGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|GAGTAAGGTGGTATCTCATTGTACCATAGCATGTCTTTGC...CAATGCCAGCCCCCACCCTTCCTTTCAGCTCTCTCCGGTCTCAGCCTCAATACCCTGACCATCTTCTCTTTCTGCAAGACCCCGGAGCTGCGGACgCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4698 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84257893:+ chr10:85990422-86019716:+ chr10:86017649:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 0 1 1 318 1001 ENST00000372088.8 ENST00000652073.1 downstream upstream mismatches(1) CGGGGATGTGACGGGCGGCCCTTCGTCTCACCTTCCGTCCTCGGGCCCGCAGGTCGCAGGGCGGCCTGCAGCTGGGCCGCGGCCGAGGAGGCAGCGCGACCTCCGCACG|GTAAACACCACTCTGCCAGCAAGGACGCTGCTGCTCGGCTGGGGCCCCTATGCCATCCTGTATCTATACGCAGTCATCGCAGACGTGACTTCCATCgCCCCCAAACTGCAGATG___GTGCCCGCCCTCATTGCCAAAATGGTGCCCACGATCAATGCCATCAACTATGCCCTGGGCAATGAGATGGTCTGCAGGGGAATCTGGCAGTGCCTCTCACCGCAGAAGAGGGAGAAGGACCGAACCAAGTGAGCCcGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4699 ACOT7::NPHP4 ENSG00000097021.21::ENSG00000131697.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 406 TRUE 790 TRUE 284 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6281102:- chr1:6324329-6453827:- chr1:6341162:- NPHP4 ENSG00000131697.18 protein_coding - - chr1:5862811-5992473:- chr1:5887466:- chr1:5922871-6052533:- chr1:5947526:- chr1:6268425,chr1:6268431,chr1:6268437 chr1:5888284,chr1:5888287,chr1:5888287 NA NA chr1:6328485,chr1:6328491,chr1:6328497 chr1:5948344,chr1:5948347,chr1:5948347 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Thioesterase_superfamily(100%)| 4HBT(100%)| 56 62 82 294 246 ENST00000361521.9 ENST00000489180.6 upstream downstream duplicates(34),low_entropy(4),mismatches(17) CCGGGATCGTGGCTGCACGCCACTGCAAGACCAACATCGTCACAGCTTCCGTGGACGCCATTAATTTTCATGACAAGATCAGAAAAG___GCTGCGTCATCACCATCTCGGGACGCATGACCTTCACGAGCAATAAGTCCATGGAGATCGAGGTGTTGGTGGACGCCGACCCTGTTGTGGACAGCTCTCAGAAGCGCTACCGGGCCGCCAGTGCCTTCTTCACCTACGTGTCGCTGAGCCAGGAAGGCAGGTCGCTGCCTGTGCCCCAGCTGGTG|CATCTCCTCCGCCAAGGCCGGCCGGCTGTGCAGGCCTCCCACGAGCTTGAGGTCGTGGCAACTGAATACGAGCAGGACAACATGGTGGTGAGTGGAGACATGCTGGGGTTTGGCCGCGTCAAGCCCATCGGCGTCCACTCGGTGGTGAAGGGCCGGCTGCACCTGACTTTGGCCAACGTGG___GTCACCCGTGTGAACAGAAAGTGAGAGGTTGTAGCACATTGCCACCGTCCAGATCTCGGGTCATCTCAAACG GIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLV|HLLRQGRPAVQASHELEVVATEYEQDNMVVSGDMLGFGRVKPIGVHSVVKGRLHLTLANVGHPCEQKVRGCSTLPPSRSRVISN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA TRUE hsa-mir-4689 chr1:5862672-5862741:- FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4700 ACOT7::NPHP4 ENSG00000097021.21::ENSG00000131697.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 790 TRUE 284 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6281102:- chr1:6324329-6453827:- chr1:6341162:- NPHP4 ENSG00000131697.18 protein_coding - - chr1:5862811-5992473:- chr1:5880239:- chr1:5922871-6052533:- chr1:5940299:- chr1:6268425,chr1:6268431,chr1:6268437 chr1:5888284,chr1:5888287,chr1:5888287 NA NA chr1:6328485,chr1:6328491,chr1:6328497 chr1:5948344,chr1:5948347,chr1:5948347 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Thioesterase_superfamily(100%)| 4HBT(100%)| 2 2 15 294 311 ENST00000361521.9 ENST00000378156.9 upstream downstream duplicates(1),mismatches(2) CGCCATTAATTTTCATGACAAGATCAGAAAAG___GCTGCGTCATCACCATCTCGGGACGCATGACCTTCACGAGCAATAAGTCCATGGAGATCGAGGTGTTGGTGGACGCCGACCCTGTTGTGGACAGCTCTCAGAAGCGCTACCGGGCCGCCAGTGCCTTCTTCACCTACGTGTCGCTGAGCCAGGAAGGCAGGTCGCTGCCTGTGCCCCAGCTGGTG|GTCACCCGTGTGAACAGAAAGTGAGAGGTTGTAGCACATTGCCACCGTCCAGATCTCGGGTCATCTCAAACGATGGAGCCAGCCGCTTCTCTGGAGGCAGCCTCCTCACGACTGGAAGCTCAAGGC___GAAAACACGTGGTGCAAGCACAGAAGCTGGCGGACGTGGACAGTGAGCT AINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLV|vtrvnrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA TRUE hsa-mir-4689 chr1:5862672-5862741:- FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4701 RERE::SLC25A33 ENSG00000142599.20::ENSG00000171612.7 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 791 TRUE 285 RERE ENSG00000142599.20 protein_coding - + chr1:8352397-8848921:- chr1:8708747:+ chr1:8412457-8908980:- chr1:8768806:+ SLC25A33 ENSG00000171612.7 protein_coding + + chr1:9539465-9585173:+ chr1:9553626:+ chr1:9599524-9645231:+ chr1:9613684:+ NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' high none |Mitochondrial_carrier_protein(96%) |Mito_carr(67%) 24 32 89 175 950 unknown ENST00000302692.7 downstream upstream duplicates(36),mismatches(15),multimappers(1) CCGCAACCTCTGCTCACCACAACCTCCACCTCCCAGGTTCAAGCAATG...GGGGACTACAGGTGTGTGCCACCACACCCAGTTAATTTTCTATTTTTAGTAGAGATAGGGTTTCACCATGTTGGCCAGCTGGTCTGGAACTCCTGACCTCACTGAATCCACCCACCTCAGTCTCCGAAAGTGCTGGAATTACAGGCATGAACCACTGAACCCGGCCAATCTGACGGTTTTAAAAATGGGAGTCTCCCTGCACAACCTCTCCATCTCTTTGCCTGCTGTCATCCATAGAAGATGTGACTTGCTCTTCTTTGCCTTCCGCCTCCCCAGCCACGTGGAACT|GTGTGGAGGCACAGTTGGTGCTATTTTCACTTGTCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGATTAGCTCTCCGGACAGTCTACTATCCTCAGGTTCATCTGGGGACCATTAGTGGAGCTGGAATGGTGAGACCAACATCCGTGACACCTGGACTCTTTCAGGTTCTGAA___GTCGATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTGGAGTTGCACCATCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4702 RERE::SLC25A33 ENSG00000142599.20::ENSG00000171612.7 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 407 TRUE 791 TRUE 285 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- SLC25A33 ENSG00000171612.7 protein_coding + + chr1:9539465-9585173:+ chr1:9553626:+ chr1:9599524-9645231:+ chr1:9613684:+ chr1:8712155,chr1:8712155,chr1:8712155 chr1:9549159,chr1:9549157,chr1:9549127 NA NA chr1:8772214,chr1:8772214,chr1:8772214 chr1:9609217,chr1:9609215,chr1:9609185 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Mitochondrial_carrier_protein(96%) |Mito_carr(67%) 1 31 7 55 950 ENST00000400908.7 ENST00000302692.7 upstream upstream duplicates(6),mismatches(3) CGGCCCCGCAGCCTCCGCGCGGCCTCCCGCCCCATCCCCGCCACTTTCCCCGGAGCTGGGCCGCGAACACCTCACTATTGATGGTGTAGCGCTTTAGGGGAAG|GTGTGGAGGCACAGTTGGTGCTATTTTCACTTGTCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGATTAGCTCTCCGGACAGTCTACTATCCTCAGGTTCATCTGGGGACCATTAGTGGAGCTGGAATGGTGAGACCAACATCCGTGACACCTGGACTCTTTCAGGTTCTGAA___GTCGATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTGGAGTTGCACCATCAAG___GGCTGTATACTTTGCATGTTACTCCAAAGCCAAAGAGCAATTTAATGGCATTTTCGTGCCTAACAGCAATATTGTGC...___CTTTTATCACAAATTCCTTAATGAATCCTATATGGATGGTTAAAACCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4703 RERE::SLC25A33 ENSG00000142599.20::ENSG00000171612.7 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 408 TRUE 791 TRUE 285 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8792404:- chr1:8412457-8908980:- chr1:8852463:- SLC25A33 ENSG00000171612.7 protein_coding + + chr1:9539465-9585173:+ chr1:9553626:+ chr1:9599524-9645231:+ chr1:9613684:+ chr1:8712155,chr1:8712155,chr1:8712155 chr1:9549159,chr1:9549157,chr1:9549127 NA NA chr1:8772214,chr1:8772214,chr1:8772214 chr1:9609217,chr1:9609215,chr1:9609185 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Mitochondrial_carrier_protein(96%) |Mito_carr(67%) 4 9 13 36 950 ENST00000337907.7 ENST00000302692.7 upstream upstream duplicates(2),mismatches(2) GGGGAAG___GAGGTGATTGTCTAGGAGTAACTGTATGTGCGCTCAGCACCGGGTCACAACCACCGTGGGATCCACTTACAGAGAAGATTTGTGGAGAGCTTCAGCCTGTTTATGGTGTTACTGAGAAAGGAATTGTGGCCATTTGATATAATTCTGGATGGAAGACCTCTTATTTGTATTACATTGAATTAGAG|GTGTGGAGGCACAGTTGGTGCTATTTTCACTTGTCCACTAGAAGTCATTAAGACACGGTTGCAGTCTTCAAGATTAGCTCTCCGGACAGTCTACTATCCTCAGGTTCATCTGGGGACCATTAGTGGAGCTGGAATGGTGAGACCAACATCCGTGACACCTGGACTCTTTCAGGTTCTGAA___GTCGATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTGGAGTTGCACCATCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4707 TMEM39B::PRDM16 ENSG00000121775.18::ENSG00000142611.17 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM39B ENSG00000121775.18 protein_coding + + chr1:32072031-32102866:+ chr1:32077318:+ chr1:32537632-32568467:+ chr1:32542919:+ PRDM16 ENSG00000142611.17 protein_coding + + chr1:3069168-3438621:+ chr1:3299077:+ chr1:2985732-3355185:+ chr1:3215641:+ chr1:32091142,chr1:32091141 chr1:3297447,chr1:3297443 NA NA chr1:32556743,chr1:32556742 chr1:3214011,chr1:3214007 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Putative_transmembrane_protein(34%)|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) Tmp39(6%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 11 33 67 217 134 ENST00000336294.10 unknown downstream upstream duplicates(27),mismatches(11),multimappers(14) ACTTCCATCTGATCGACTTCAACTTGCTGATGGTGACCACCATCGTTCTGGGCCGCCGCTTCATTGGGTCCATCGTGAAGGAG___GCCTCTCAGAGGGGGAAGGTCTCCCTCTTTCGCTCCATCCTGCTGTTCCTCACTCGCTTCACCGTTCTCACGGCAACAGGCTGGAGTCTGTGCCGATCCCTCATCCACCTCTTCAGGACCTACTCCTTCCTGAACCTCCTGTTCCTCTGCTATCC|ACACTGGCTCGGCCCTTGTTGGAGATGCTGTGCTGTGGCCGTGATGTTTCCGATCCCAGTCGTGGTGGCTCTGCCCTGGTTGAAGATGCTGTGCTGTGGCCATGATGTTTCAGATCCCAGTCGTGGTGGCTCTGCCCTGGTTGAAGATGCCGTGCTGTGGCCGTGATGTTTCAGATCCCAGTCaTGGTGGCTCTGCCCTTGTTGAAGATGCTATGCTGTGGCCATGATGTTTCAGATCCCAGTCGTGGTGACTCTGCCCTTGTTGAAGATGCTATGCTGTGGCTGTGATGTTTCAGATCCCAG FHLIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYp|hwlgpcwrccavavmfpipvvvalpwlkmlccghdvsdpsrggsalvedavlwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PR domain containing 16 1 Yes MDS, AML leukaemia_lymphoma oncogene, fusion translocation 4708 ICE1::IFT80 ENSG00000164151.12::ENSG00000068885.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ICE1 ENSG00000164151.12 protein_coding + + chr5:5420664-5490220:+ chr5:5457741:+ chr5:5420777-5490333:+ chr5:5457854:+ IFT80 ENSG00000068885.15 protein_coding - + chr3:160256986-160399880:- chr3:160300970:+ chr3:159974774-160117668:- chr3:160018758:+ chr5:5460506,chr5:5460505 chr3:160258155,chr3:160258151 NA NA chr5:5460619,chr5:5460618 chr3:159975943,chr3:159975939 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none none none 14 15 10 353 469 ENST00000296564.9 unknown downstream upstream duplicates(1) GCTCCAGAGTGCCTGGGGAAGATGGTACGCTACCTCCAACACAGGGCAGCCCTCTCAGGACCTCAAATGTGCAGACATGCCTCACAAAACTGTCCATGGAGATAAAGGAGGACTTTTTATGTCAAAATGTGGAAAAACAGAGCTCCAGTGGAACAAATTGTAGTTCTGACCATGTTTTTAATGAGAATGGAAATCTTGAGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAATTTGTTGATCATGATCATTTTTTTGATGAAGATCTTCAAGCTGCAATTGACTTCTTCAAACTTCCCCCTCCTCTTCTGTCACCAGTGCCCTCGCCCCCTCCGATGTCATCACCTCACCCGGGTTCCTTACCGTCTTCATTTGCACCT|GAAATTTTGGAGATGAAATAAAGCGCCCTTCATATGAATATAAATAGATACTACTACCATCTACAAGAAGAAAATGT___CTTTCTGCCTGCAGAATCAAACTAACAGTTCCTTCTTTGAGATCAAATATAATTGGTGTGTTCCAGTTCTTCGTG___GAGAACACGTAACATTGAAGAGACGTTGAAACAACTAAGTGTGCATAGTTCAAAGATGCTTTAATGACTCTATCACGGAATTCCAGTAAATCCACTGCATCATTAAGAACATTAC SRVPGEDGTLPPTQGSPLRTSNVQTCLTKLSMEIKEDFLCQNVEKQSSSGTNCSSDHVFNENGNLEVLVQSHRDGGSTEFVDHDHFFDEDLQAAIDFFKLPPPLLSPVPSPPPMSSPHPGSLPSSFAP|eilemk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4709 ICE1::ENSG00000248710 ENSG00000164151.12::ENSG00000248710.1 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ICE1 ENSG00000164151.12 protein_coding + + chr5:5420664-5490220:+ chr5:5457741:+ chr5:5420777-5490333:+ chr5:5457854:+ ENSG00000248710 ENSG00000248710.1 protein_coding - + chr3:160227454-160449829:- chr3:160300970:+ chr3:159945241-160167617:- chr3:160018758:+ chr5:5460506,chr5:5460505 chr3:160258155,chr3:160258151 NA NA chr5:5460619,chr5:5460618 chr3:159975943,chr3:159975939 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none none none 14 15 10 353 469 ENST00000296564.9 unknown downstream upstream duplicates(1) GCTCCAGAGTGCCTGGGGAAGATGGTACGCTACCTCCAACACAGGGCAGCCCTCTCAGGACCTCAAATGTGCAGACATGCCTCACAAAACTGTCCATGGAGATAAAGGAGGACTTTTTATGTCAAAATGTGGAAAAACAGAGCTCCAGTGGAACAAATTGTAGTTCTGACCATGTTTTTAATGAGAATGGAAATCTTGAGGTTTTAGTACAAAGTCATCGTGACGGTGGTAGTACTGAATTTGTTGATCATGATCATTTTTTTGATGAAGATCTTCAAGCTGCAATTGACTTCTTCAAACTTCCCCCTCCTCTTCTGTCACCAGTGCCCTCGCCCCCTCCGATGTCATCACCTCACCCGGGTTCCTTACCGTCTTCATTTGCACCT|GAAATTTTGGAGATGAAATAAAGCGCCCTTCATATGAATATAAATAGATACTACTACCATCTACAAGAAGAAAATGT___CTTTCTGCCTGCAGAATCAAACTAACAGTTCCTTCTTTGAGATCAAATATAATTGGTGTGTTCCAGTTCTTCGTG___GAGAACACGTAACATTGAAGAGACGTTGAAACAACTAAGTGTGCATAGTTCAAAGATGCTTTAATGACTCTATCACGGAATTCCAGTAAATCCACTGCATCATTAAGAACATTAC SRVPGEDGTLPPTQGSPLRTSNVQTCLTKLSMEIKEDFLCQNVEKQSSSGTNCSSDHVFNENGNLEVLVQSHRDGGSTEFVDHDHFFDEDLQAAIDFFKLPPPLLSPVPSPPPMSSPHPGSLPSSFAP|eilemk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4712 MIR548XHG::TMPRSS15 ENSG00000224141.6::ENSG00000154646.9 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 792 TRUE 286 MIR548XHG ENSG00000224141.6 lncRNA - - chr21:18561265-18760320:- chr21:18737924:- chr21:19933583-20132638:- chr21:20110242:- TMPRSS15 ENSG00000154646.9 protein_coding - - chr21:18269116-18485879:- chr21:18398329:- chr21:19641433-19858197:- chr21:19770646:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),MAM_domain__meprin/A5/mu(100%),SEA_domain(100%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%) |CUB(100%),DUF1986(100%),Ldl_recept_a(100%),MAM(100%),SEA(100%),SRCR(100%),SRCR_2(100%),Trypsin(100%) 0 3 6 203 55 ENST00000671206.1 ENST00000284885.8 upstream downstream mismatches(3) GAGAACCTGAGGCTTGCCACCATCTTAGAAGCGGCTTGCCACCATCTTGGAAGTGGgTCGCCACCATTTTGGCAACCAGGAAGGaACCTCCAAAGCG___GGAGAAAGCATTTATGGTGAGGAGAAAAaCAGCTGGTATCACACTCTACCCAAGTCCCAAAAGCAGGTTCACATAACTCCTGTCTTCATTATCTGATATCCG|GTGCAGCACTTGGACAGAGTCATGAAGCCAGAGCGACATTTAAAATAACATCCGGAGTTACATATAATCCTAATTTGCAAGACAAACTCTCAGTGGATTTCAAAGTTCTTGCTTTTGACCTTCAGCAAATG___ATAGATGAGATCTTTCTATCAAGCAATCTGAAGAATGAATATAAGAACTCAAGAGTTTTACAATTTGA___AAATGGCAGCATTATAGTCGTATTTGACCTTgTC...ATTTTTGTTAACTGGATCATCTGGGTCTTTCCAGGCTACTCATTATCCAAAACCTTCTGAAACAAGTGTTGTCTGCCAGTGGATCATACG___TGTAAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4713 MIR548XHG::TMPRSS15 ENSG00000224141.6::ENSG00000154646.9 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 792 TRUE 286 MIR548XHG ENSG00000224141.6 lncRNA - - chr21:18561265-18760320:- chr21:18737924:- chr21:19933583-20132638:- chr21:20110242:- TMPRSS15 ENSG00000154646.9 protein_coding - - chr21:18269116-18485879:- chr21:18383778:- chr21:19641433-19858197:- chr21:19756095:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),MAM_domain__meprin/A5/mu(100%),SEA_domain(43%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%) |CUB(100%),DUF1986(100%),Ldl_recept_a(100%),MAM(100%),SEA(0%),SRCR(100%),SRCR_2(100%),Trypsin(100%) 0 1 1 203 65 ENST00000671206.1 ENST00000474775.1 upstream downstream mismatches(1) GGGAGAAAGCATTTATGGTGAGGAGAAAAaCAGCTGGTATCACACTCTACCCAAGTCCCAAAAGCAGGTTCACATAACTCCTGTCTTCATTATCTGATATCCG|AAATGGCAGCATTATAGTCGTATTTGAC...TCTGGCAACTCCAG___GAAATGTCTCAATAGAGTGCCTGCCTGGTTCAAGTCCTTGTACTGATcCTCTAAaGTGTATAAAAGCTGATTTATTTTGTGATGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4714 PDS5B::ENSG00000261553 ENSG00000083642.19::ENSG00000261553.5 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 793 TRUE 287 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75621763:+ chr13:76123909-76381256:+ chr13:76195899:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 1 18 0 110 70 ENST00000315596.15 ENST00000563635.5 downstream upstream duplicates(2),mismatches(3) GCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|AGAACAGAGCTCGGAGCTCTGGAAATTTGGAGGCAACTGATATGTGCTCATGTCTGCATCTGTGTGGGTTGGCTGTATCTCAGGGACAGAGTCTGCAGCAAAAAAG___GCAGTAACAGAGAAGAATTTTGAAACAAAAGATTTTCGAGCCTCTCTAGA?AATGGTGTTCTGCTGTGTGA___TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAAG...GGAGAGTGAAAAAT___GTTTTGATAACATTGTACTGGCTGGGAAGAAAAGCACAAAGCAACCCGTACTATAATGGTCCCCATCTTAATTTGAAAGCGTTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4715 PDS5B::ENSG00000261553 ENSG00000083642.19::ENSG00000261553.5 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 793 TRUE 287 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75594915:+ chr13:76123909-76381256:+ chr13:76169051:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 0 25 0 110 480 ENST00000315596.15 ENST00000563635.5 downstream upstream duplicates(5),mismatches(3) GCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAAC...CCATAGAAGTTTGC...___AGAACAGAGCTCGGAGCTCTGGAAATTTGGAGGCAACTGATATGTGCTCATGTCTGCATCTGTGTGGGTTGGCTGTATCTCAGGGACAGAGTCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4716 PDS5B::ENSG00000261553 ENSG00000083642.19::ENSG00000261553.5 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 793 TRUE 287 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75727029:+ chr13:76123909-76381256:+ chr13:76301165:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 0 9 0 110 358 ENST00000315596.15 ENST00000563635.5 downstream upstream duplicates(1),mismatches(1) GGCTGCGGAAGGGGA-GGGGGGGGAGAAGGCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAA___GCAAGAAGAGACTGACAGGAGAGTGAAAAAT___GTTTTGATAACATTGTACTGGCTGGGAAGAAAAGCACAAAGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4717 PDS5B::ENSG00000261553 ENSG00000083642.19::ENSG00000261553.5 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 793 TRUE 287 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75713182:+ chr13:76123909-76381256:+ chr13:76287318:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 0 6 0 110 256 ENST00000315596.15 ENST00000563635.5 downstream upstream mismatches(2) GGCTGCGGAAGGGGA-GGGGGGGGAGAAGGCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|GCAGTAACAGAGAAGAATTTTGAAACAAAAGATTTTCGAGCCTCTCTAGAAAATGGTGTTCTGCTGTGTGA___TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4718 PDS5B::ENSG00000261553 ENSG00000083642.19::ENSG00000261553.5 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 793 TRUE 287 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75760932:+ chr13:76123909-76381256:+ chr13:76335068:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 2 0 110 355 ENST00000315596.15 ENST00000563635.5 downstream upstream none CGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCA...CCCATCTTAATTTGAAAGCGTTTGAGAATCTTTTAGGACAAGCACTGACGAAG___GCACTCGAAGACTCCAGCTTCCTGAAAAGAAGTGGCAGGGACAGTGGC...CTTTGGGCTCGAGGTCATTGACAAGCTGCTCCTCTGATATCACGTTGAGAGGGGGGCGTGAAG___GTTTTGAAAGTGACACAGATTCGGAATTTACATTcAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4723 TUBGCP3::ENSG00000285534 ENSG00000126216.15::ENSG00000285534.1 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUBGCP3 ENSG00000126216.15 protein_coding - - chr13:112485011-112588205:- chr13:112558196:- chr13:113139325-113242519:- chr13:113212510:- ENSG00000285534 ENSG00000285534.1 lncRNA - + chr13:109478739-109731700:- chr13:109727774:+ chr13:110131086-110384047:- chr13:110380121:+ chr13:112543492,chr13:112543487,chr13:112543469,chr13:112543459,chr13:112543457,chr13:112543449,chr13:112543447 chr13:109704750,chr13:109704750,chr13:109704750,chr13:109704750,chr13:109704750,chr13:109704750,chr13:109704750 NA NA chr13:113197806,chr13:113197801,chr13:113197783,chr13:113197773,chr13:113197771,chr13:113197763,chr13:113197761 chr13:110357097,chr13:110357097,chr13:110357097,chr13:110357097,chr13:110357097,chr13:110357097,chr13:110357097 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 2 2 8 497 28 ENST00000649778.1 unknown upstream upstream duplicates(1),mismatches(1) CAATACTCTACCTCTTGCTGAGCCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAG___GTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAAGAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCCCAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCCCGCGCCTGCGCCACAATCTCTCCTCCCAGG|GTCTGCATTGTGTTTTTCTAGGGTCACTCATCTATTCATCCAACAAATATTCAACAAGCACCTGTTACATACCAGATTATTACATACATGTGGCAGTGCACGTAACTGTGAAGCTGTGTACTACAGCTGCAGGGCGAGGACTGGGGCTTTAGCTCCCACCTTGTGCAATGTGGGATCTTCTCCATCG ILYLLLSLSEDPRRQPSKVSSYATLFAQALPRDAHSTPYYYARPQTLPLSYQDRSAQSAQSSGSVGSSGISSIGLCALSGPAPAPQSLLPg|salcfsrvthlfiqqifnkhllhtrllhtcgsarnceavyyscrartgalaptlcnvgssp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4731 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 798 FALSE NA HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10523187:- chrX:10413350-10851773:- chrX:10491227:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Fibronectin_type_III_domain(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%) 1 0 1 53 152 ENST00000701330.1 ENST00000380787.5 upstream downstream duplicates(2) CTTTGCTAAGGCCTAAATGAATGAAG___TGCAGGTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGAaCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|CAAAACTTAGAGAGTAACCTCACCAACCTTATTAAGAGGAACACAGAACTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4733 PRKAA1::EGFLAM ENSG00000132356.12::ENSG00000164318.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 412 TRUE 799 TRUE 288 PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40769416:- chr5:40759491-40798476:- chr5:40769518:- EGFLAM ENSG00000164318.18 protein_coding + + chr5:38258409-38465480:+ chr5:38409004:+ chr5:38258511-38465582:+ chr5:38409106:+ chr5:40769408,chr5:40769412 chr5:38408573,chr5:38408569 NA NA chr5:40769510,chr5:40769514 chr5:38408675,chr5:38408671 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(69%)|EGF-like_domain(100%),Laminin_G_domain(99%) ABC1(100%),PK_Tyr_Ser-Thr(87%),Pkinase(87%)|EGF(100%),Laminin_G_1(97%),Laminin_G_2(97%),hEGF(100%) 3 1 6 536 12 ENST00000397128.7 ENST00000322350.10 upstream upstream duplicates(4),mismappers(2) CTCCATGAGAGCAGAGAATTTTTGTTTCCTGCAGTTTTTCTAGCTCCTAGCCTAGTACCTGGTATACTATAGGTGCTTAGTAAATATTTATTGAATGAATG...GTTCCAACAGATCCTTTCTGGTGTGGATTATTGTCACAGGCATATGGTGGTCCATAGAGATTTGAAACCTGAAAATGTCCTGCTTGATGCACACATGAATGCAAAGATAGCTGATTTTG___GTCTTTCAAACATGATGTCAGATGGTGAATTTTTAAGAACAAGTTGTGGCTCACCCAACTATGCTGCACCAGAAGTAATTTCAGGAAG|GCGGAGGCAGAGGATGGCTTACTGCTCTACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTCCCTGGCTATCATCCGACGCTCCCTGCAGTTCAG___GTTTAATTGTGGAACTGGGGTTGCCATCATCGTAAGTGAGACCAAAATCAAACTAGG...CTTTCCGGACACCTCTCTATCTTGGTGGCGCTCCCAGCGCTTACTGGTTGGTTAGAGCAACAGGGACAAACCGAGGCTTTCAAGGCTGTGTGCAGTCGCTC FQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGr|rrqrmaycstvgrtntgggiscpwlssdapcssglivelglpss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4734 PRKAA1::EGFLAM ENSG00000132356.12::ENSG00000164318.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 799 TRUE 288 PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40775410:- chr5:40759491-40798476:- chr5:40775512:- EGFLAM ENSG00000164318.18 protein_coding + + chr5:38258409-38465480:+ chr5:38409004:+ chr5:38258511-38465582:+ chr5:38409106:+ chr5:40769408,chr5:40769412 chr5:38408573,chr5:38408569 NA NA chr5:40769510,chr5:40769514 chr5:38408675,chr5:38408671 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Protein_kinase_domain(34%)|EGF-like_domain(100%),Laminin_G_domain(99%) ABC1(26%),PK_Tyr_Ser-Thr(69%),Pkinase(69%)|EGF(100%),Laminin_G_1(97%),Laminin_G_2(97%),hEGF(100%) 1 0 1 408 12 ENST00000397128.7 ENST00000322350.10 upstream upstream none CGACGGGCGGGTGAAGATCGGCCACTACATTCTGGGTGACACGCTGGGGGTCGGCACCTTCGGCAAAGTGAAGG___TTGGCcAACATGAATTGACTGGGCATA...GATGGAATATGTCTCAGGAGGAGAGCTATTTGATTATATCTGTAAGAATGGAAGG|GCGGAGGCAGAGGATGGCTTACTGCTCTACTGTGGGGAGAACGAAC MEYVSGGELFDYICKNGR|AEAEDGLLLYCGENE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4737 DNAJC3-DT::EXOC2 ENSG00000247400.6::ENSG00000112685.14 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 801 TRUE 289 DNAJC3-DT ENSG00000247400.6 lncRNA - - chr13:95648711-95676973:- chr13:95675852:- chr13:96300965-96329227:- chr13:96328106:- EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:610178:- chr6:485154-693139:- chr6:610178:- chr13:95662125,chr13:95662128,chr13:95662132 chr6:613340,chr6:613340,chr6:613340 NA NA chr13:96314379,chr13:96314382,chr13:96314386 chr6:613340,chr6:613340,chr6:613340 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Exocyst_complex_component_Sec5(87%) |Sec5(86%) 0 3 2 71 97 ENST00000662244.1 ENST00000230449.9 upstream downstream duplicates(2) ATTCCCTGAAGATATACTAAGGTGGACTTTTAAAAAGGCTTCTATTCCAAAGGGAACTAATATGGAGGAAATGGTTTCGAGAAAGAAAAAAGAAAAAACGG...GTTGTGGGGAAGGCAACATAATGTAATGTGAAGAATAAAGGAGTCAGATCCAGGAAACCCCATAACTATTAT|CCATCCATCAAAAACTAGAAGCAGATGGAACGGAAAAAGTAGAAGGATCCATGACGCAGAAACTGGAGAATGTTCTGAACA___GAGCAAGTAATACTGCAGACACATTGTTTCAAGAAGTATTAGGTCGGAAAGACAAGGCAGATTCCAC...CAATGTGCTTCAGCGATTTAAGTTTCTTTTCAACCTTCCTCTAAATATTGAAAGGAATATTCAAAAG___GGTGATTATGATGTGGTTATTAATGATTATGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4738 DNAJC3-DT::EXOC2 ENSG00000247400.6::ENSG00000112685.14 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 801 TRUE 289 DNAJC3-DT ENSG00000247400.6 lncRNA - - chr13:95648711-95676973:- chr13:95676145:- chr13:96300965-96329227:- chr13:96328399:- EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:610178:- chr6:485154-693139:- chr6:610178:- chr13:95662125,chr13:95662128,chr13:95662132 chr6:613340,chr6:613340,chr6:613340 NA NA chr13:96314379,chr13:96314382,chr13:96314386 chr6:613340,chr6:613340,chr6:613340 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Exocyst_complex_component_Sec5(87%) |Sec5(86%) 1 0 1 89 97 ENST00000700803.1 ENST00000230449.9 upstream downstream duplicates(2) AAAAAACTGTGAGAACGGATCCTGAATCTTGCGCTTACCAGGGGAAATTCAGGAGAGATATGAACCTGAGCAAGATGAGGTTGAAGTTACTCAATGCGGCATTAAGCCTGTTCACGGCCACTTCCTCCGGCGTCACCAACACACACACTGTACACCAGCAGTATTTTTACACGGG|CCATCCATCAAAAACTAGAAGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4740 PDS5B::UCHL3 ENSG00000083642.19::ENSG00000118939.19 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 413 TRUE 802 TRUE 290 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(20%) |Peptidase_C12(19%) 0 44 0 110 480 ENST00000315596.15 ENST00000377595.8 downstream upstream duplicates(6),mismatches(5) ATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|GCACCAAGTATAGATGAGAAAGTAGATCTTCATTTTATTGCATTAGTTCATGTAGATGGGCATCTCTATGAATTAG___ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGGAAACACCAAAAACTGTATTATTTGCAACTAAATTT...___AGAACAGAGCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4741 PDS5B::UCHL3 ENSG00000083642.19::ENSG00000118939.19 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 802 TRUE 290 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75589938:+ chr13:76123619-76180156:+ chr13:76164074:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(43%) |Peptidase_C12(28%) 0 1 0 110 28 ENST00000315596.15 ENST00000419068.1 downstream upstream none CGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|TCCTCCTCGCCATCCTCATCACAGCCTCATTCTAGCCACTGCA...CTGCCCTGGGTCAAACGTAACCATGTAGGCCCTGCAAAGGCTACCAGTCCATCTCTCCGTCTTCGTCGCTGGCGACCCTTCTTACGTCTACCATCTTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4742 PDS5B::UCHL3 ENSG00000083642.19::ENSG00000118939.19 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 802 TRUE 290 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75604769:+ chr13:76123619-76180156:+ chr13:76178905:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(11%) |Peptidase_C12(1%) 0 1 0 110 323 ENST00000315596.15 ENST00000377595.8 downstream upstream none ATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGaGGAGTAGCGAGTCGGCAACCCGGAG|ATGGGCGGAAGCCATTTCCAATTAACCAT...ATATGTGCTCATGTCTGCATCTGTGTGGGTTGGCTGTATCTCAGGGACAGAGTCTGCAGCAAAAAAG___ATATAATTTTGAGGACTGAACAAAATTCAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4749 PSMB2::KPNA6 ENSG00000126067.12::ENSG00000025800.14 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 804 FALSE NA PSMB2 ENSG00000126067.12 protein_coding - - chr1:35599541-35641526:- chr1:35609246:- chr1:36065142-36107127:- chr1:36074847:- KPNA6 ENSG00000025800.14 protein_coding + + chr1:32108056-32176563:+ chr1:32154588:+ chr1:32573657-32642164:+ chr1:32620189:+ chr1:35600543,chr1:35600549 chr1:32111894,chr1:32111888 NA NA chr1:36066144,chr1:36066150 chr1:32577495,chr1:32577489 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Proteasome_subunit(81%)|Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%),Importin_beta_binding_domain(100%) Proteasome(84%)|Arm(100%),Arm_3(100%),HEAT_2(100%),HEAT_EZ(100%),IBB(100%) 1 0 0 3621 260 ENST00000373237.4 ENST00000373625.8 upstream upstream mismatches(1) GCTAACTTCACACGCCGAAAaCTGGCTGACTGTCTTCGGAGTCGG___ACCCCATATCATGTGAACCTCCTCCTGGCTGGCTATGATGAGCATGAAGGGCCAGC...CTCGACCGATACTACACACCGA|AGACCATGGCGAGCCCAGGGAAAGACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAG...AAGAGAGGcAGAGGGCATTCAGCgCCGtAcGCAGAAGCGAGAGCAACAA___CTTTTTAAACGGAGAAATGTGGgtCTtATTAATGAAGAAGCTGCtATGTTCG LDRYYTP|kTMASPGKDNYRMKSYKNNALNPEEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4752 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 805 TRUE 291 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13958185:- chr21:15281895-15352232:- chr21:15330506:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 2 3 2 ENST00000428809.5 ENST00000451663.5 downstream downstream duplicates(1) CGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCT...CTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|CATTTTCCATGAACTGTGTGTGGATTTATTGCCTGCATTGGATGA...TCCTTGAAG___CCTAGCACTGAAATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTACAGACATTGAGAGCAG___AAAAAGCCTTACCAGTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4753 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 805 TRUE 291 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13940978:- chr21:15281895-15352232:- chr21:15313299:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 3 7 ENST00000428809.5 ENST00000451663.5 downstream downstream none CTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|GTCAAAGAAGGAAATAATACATACAAAAGTGAAAA...AAAGAAAGATTGGGAAAACATAACCTCAGCAATTTCCCAAGAAACTGAAGGAAGAGCATGATAG___ATGCACCTTAAAACAAGAAAATGAAGAAAAAACAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4758 DNAJC16::AGMAT ENSG00000116138.13::ENSG00000116771.6 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJC16 ENSG00000116138.13 protein_coding + + chr1:15526813-15592379:+ chr1:15548428:+ chr1:15853308-15918874:+ chr1:15874923:+ AGMAT ENSG00000116771.6 protein_coding - - chr1:15571699-15585051:- chr1:15580142:- chr1:15898194-15911546:- chr1:15906637:- chr1:15557645 chr1:15580568 NA NA chr1:15884140 chr1:15907063 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none DnaJ_domain(100%),Thioredoxin(100%)|Arginase_family(67%) DnaJ(100%),Thioredoxin(100%)|Arginase(58%) 12 10 4 186 59 ENST00000375849.5 ENST00000375826.4 downstream downstream duplicates(4),mismatches(2) GTTACAAATAAAAATTACGTCAGATTCCTCTCTGGCTGGCAGCAAGAGAATAAGCCTCATGTCCTTCTGTTTGACCAAACGCCCATTGTGCCACTGTTATACAAG___TTGACTGCCTTTGCATACAAAGATTATTTATCATTTGGATATGTATATGTGGGTTTGAGAGGGACGGAAGAGATGACAAGGCGGTACAACATCAATATCTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGCCTGCCGATGTTATCCAG|GTGGAGATCACACAATCACATATCCCATATTGCAAGCGATGGCAAAAAA___GCATGGCCCAGTGGGGCTGCTGCACGTGGATGCGCACACGGACACGACCGACAAGGCCCTAGGAGAGAAGCTCTACCACGGGGCGCCCTTC...GAGGGTCTCCTGGACTGTAA...CGTGTGGTGCAGATT?GCATCCGGGGCTCTTCCACGACCTTGGATCCCTACAGATACAACCGGAGCCAGGTGACAGACCG VTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLRGTEEMTRRYNINIYAPTLLVFKEHINRPADVIQ|veitqshipyckrwqksmaqwgcctwmrtrtrptrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4804 CRYBG1::PDSS2 ENSG00000112297.18::ENSG00000164494.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 417 TRUE 812 TRUE 292 CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106361081:+ chr6:106808592-107019892:+ chr6:106808956:+ PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107193854:- chr6:107473766-107780768:- chr6:107515058:- chr6:106398915,chr6:106398907,chr6:106398928,chr6:106398929,chr6:106456339 chr6:107196567,chr6:107196567,chr6:107196567,chr6:107196567,chr6:107265783 NA NA chr6:106846790,chr6:106846782,chr6:106846803,chr6:106846804,chr6:106904214 chr6:107517771,chr6:107517771,chr6:107517771,chr6:107517771,chr6:107586987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 296 298 295 1363 1566 ENST00000633556.3 ENST00000369037.9 downstream downstream duplicates(158),low_entropy(5),mismappers(8),mismatches(35) GCGCGCTGAGAAAGGCGGGCGAGCTGGCGCTCAGGTGTGTTCTTCCATAGGGCCCGGGCGGCAGAGAGGACCGCGTCCCGGCAGTCGGAGCGGGAGGAGGACAAGACGATGCCGCTGTCCCCGCCAGCCCAGGGCGACCCCGGGGAGCCCAGCCCGTGCAGGCCCCCTAAGAAGCACACCACCTTCCACCTCTGGCGCTCCAAAAAGAAGCAGCAGCCGGCGCCGCCTGACTGTGGGGTGTTCGTTCCGCACCCGCTCCCGGCGCCTGCCGGAGAGGCCAG|GCTCAAGAAAAAGGAAGATTGGACTATGCTAAG___TTGCGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCGTTACCATGGAAACAAGGCACTGGAGGCCCTGGAGAGCTTTCCTCCCTCGGAGGCCAGATCTGCTTTAGAAAACATTGTGTTTGCTGTGACCAGATTTTCATGACATCAAATTAAAAAGACACTATTGTTAGTTAGCTGAAAATCCTAGGGAATGAGGTTGATTGGGAGCGCTTTCACG MPLSPPAQGDPGEPSPCRPPKKHTTFHLWRSKKKQQPAPPDCGVFVPHPLPAPAGEAr|lkkkedwtmlscekesklakv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 106451832 FALSE 107193854 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4805 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 418 TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 75 10 127 605 384 ENST00000369037.9 ENST00000633556.3 upstream upstream duplicates(50),mismatches(9) CTCCTCTGCCCCTGGTTTGTTTCCCGCGGCACTTCTGGATACCCCCAGGTCCCAGACCCTTCCAGACTCAAACCATGAACTTTCGGCAGCTGCTGTTGCACTTGCCACGTTATCTTGGAGCCTCGGGTTCCCCGCGTCGCCTGTGGTGGTCCCCGTCCCTCGACACCATCTCCTCGGTGGGCTCTTGGCGTGGTCGGTCCTCCAAGTCCCCGGCCCACTGGAATCAGGTAGTGTCAGAGGCGGAGAAGATCGTGGGGTACCCCACGTCCTTCATGAGCCTTCGCTGCCTGCTGAGCGACGAGCTCAGCAACATCGCTATGCAGGTGCGGAAGCTGGTGGGCACTCAGCACCCTCTGCTTACCACAGCCAG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAGG MNFRQLLLHLPRYLGASGSPRRLWWSPSLDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTAr|ALDVVDGKYVVRDSQEFPLHCGESQFFHTTSEALGSLLLESGIFKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4806 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 419 TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107429149,chr6:107429189,chr6:107429151,chr6:107429148,chr6:107429173,chr6:107429146,chr6:107429146,chr6:107429146,chr6:107429147,chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106510507,chr6:106510507,chr6:106510507,chr6:106510541,chr6:106510507,chr6:106510510,chr6:106510516,chr6:106510519,chr6:106510511,chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107750353,chr6:107750393,chr6:107750355,chr6:107750352,chr6:107750377,chr6:107750350,chr6:107750350,chr6:107750350,chr6:107750351,chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106958382,chr6:106958382,chr6:106958382,chr6:106958416,chr6:106958382,chr6:106958385,chr6:106958391,chr6:106958394,chr6:106958386,chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 8 5 30 605 382 ENST00000369037.9 ENST00000633556.3 upstream upstream duplicates(7),mismatches(4) ATCTTGGAGCCTCGGGTTCCCCGCGTCGCCTGTGGTGGTCCCCGTCCCTCGACACCATCTCCTCGGTGGGCTCTTGGCGTGGTCGGTCCTCCAAGTCCCCGGCCCACTGGAATCAGGTAGTGTCAGAGGCGGAGAAGATCGTGGGGTACCCCACGTCCTTCATGAGCCTTCGCTGCCTGCTGAGCGACGAGCTCAGCAACATCGCTATGCAGGTGCGGAAGCTGGTGGGCACTCAGCACCCTCTGCTTACCACAGCCAG|TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAGAAACAGTAGAAACGGGTTAGAGAGTCCCACCAGATCAAATGCCAAACCACTCTCTCCCAAAGATGTGGTAGCCTCTCCTAAGCTCCCAGAGAGAGAGAGTGAGAGGAGCAGATCTCAGAGCAGCCAACTGAAGCAAACGG LGASGSPRRLWWSPSLDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTAs|pehnlqkttegsqfwgnlalyslqegeetvetg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4807 CRYBG1::PDSS2 ENSG00000112297.18::ENSG00000164494.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 812 TRUE 292 CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106361081:+ chr6:106808592-107019892:+ chr6:106808956:+ PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107154777:- chr6:107473766-107780768:- chr6:107475981:- chr6:106398915,chr6:106398907,chr6:106398928,chr6:106398929,chr6:106456339 chr6:107196567,chr6:107196567,chr6:107196567,chr6:107196567,chr6:107265783 NA NA chr6:106846790,chr6:106846782,chr6:106846803,chr6:106846804,chr6:106904214 chr6:107517771,chr6:107517771,chr6:107517771,chr6:107517771,chr6:107586987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 5 0 299 1363 1889 ENST00000633556.3 ENST00000369037.9 downstream downstream duplicates(44),mismappers(1),mismatches(17) GCTCAGGTGTGTTCTTCCATAGGGCCCGGGCGGCAGAGAGGACCGCGTCCCGGCAGTCGGAGCGGGAGGAGGACAAGACGATGCCGCTGTCCCCGCCAGCCCAGGGCGACCCCGGGGAGCCCAGCCCGTGCAGGCCCCCTAAGAAGCACACCACCTTCCACCTCTGGCGCTCCAAAAAGAAGCAGCAGCCGGCGCCGCCTGACTGTGGGGTGTTCGTTCCGCACCCGCTCCCGGCGCCTGCCGGAGAGGCCAG|TTGCGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCGTTACCATGGAAACAAGGCACTGGAGGCCCTGGAGAGCTTTCCTCCCTCGGAGGCCAGATCTGCTTTAGAAAACATTGTGTTTGCTGTGACCAGATTTTCATGACATCAAATTAAAAAGACACTATTGTTAGTTAGCTGAAAATCCTAGGGAATGAGGTTGATTGGGAGCGCTTTCACGATGCGTTAATGACTTTTAAAACATATGCATTTTT MPLSPPAQGDPGEPSPCRPPKKHTTFHLWRSKKKQQPAPPDCGVFVPHPLPAPAGEAs|cekesklakv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 106451832 FALSE 107193854 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4811 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 420 TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 80 138 262 1930 5800 ENST00000651587.1 ENST00000369076.8 downstream downstream duplicates(153),low_entropy(3),mismatches(21) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAACAGAATCATCCTTAAATGGGATTTATCAGAGCATGTCACCCTTTTGCTTCAATCAGGTTTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4812 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128155419:+ chr8:128806772-129199347:+ chr8:129167665:+ ATG5 ENSG00000057663.16 protein_coding - + chr6:106045423-106325791:- chr6:106146545:+ chr6:106493298-106773666:- chr6:106594420:+ chr8:128159432,chr8:128159432,chr8:128159426 chr6:106142393,chr6:106142394,chr6:106142384 NA NA chr8:129171678,chr8:129171678,chr8:129171672 chr6:106590268,chr6:106590269,chr6:106590259 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 12 18 61 253 161 ENST00000651587.1 unknown downstream upstream duplicates(25),low_entropy(2),mismatches(3) CTTCCATCCAGAGGCAAATGATATCTTCTTGTCTCTCTGTAATACACAAAACAATTTTCAACCAGAAATGTAGATGAGTGAGGATTCTGAaGTACCTAGAATATTTGGATGACTGCTGCTTGAATGGATGGCCTTGAGACACCTGAAGACCCTGATGTGCCTTCTGAATCATACCACGATTCAATTACATCCATCATTTAACAACAACAACAACTCTAGAAG|GGTTCTGCACACGGCTGAGATCCAAACCTGTTGGAACTGTTTGTCTAACTTGCACTGGATACATAGAGATTAAATTCACTGCAAAGGGTTAAACACACGATGTCTCCTGGACACTCACTAGTGATGTTGATGCTGATGCTGATGCTGATGGAGATGGCGATTGGTCAACTGAG___AATGCCAAAATCAATCACAAGTCAAAAATGGAAGTTTCTCAATTTCAACCATATCAGGGCACGGACTCAACTTTCAGTAACAGGAAAACAACAACAAAATAAAATGACAGGCAACTTTGAAAATGGATGTACGGTTTCTGACACTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4813 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 5 5 278 129 5800 ENST00000523328.6 ENST00000369076.8 downstream downstream duplicates(69),low_entropy(1),mismatches(14) CCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4814 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818996:+ chr8:128806772-129199347:+ chr8:128831242:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202091:- chr6:106493298-106773666:- chr6:106649966:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 3 0 280 52 5800 ENST00000656168.1 ENST00000475645.1 downstream downstream duplicates(64),mismappers(2),mismatches(15) GCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG___GCTGGAGTGCAGTGGCGTGATCATAGCTCACAACAGCCTCTGTCTGCCAGGCTCAAGGGATACTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTTGC|AGACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4816 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127852347:+ chr8:128806772-129199347:+ chr8:128864593:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 281 39 5800 ENST00000657449.1 ENST00000369076.8 downstream downstream duplicates(64),mismatches(14) CAGAGCCTGGCGTCAGAAAGCTGCATTGCGCTAATGCTGAAGCCTGTGGGAGCCTGTTGGAGAGACACTTGGATGTTTAGCGAGCTGGTGACTCTCCTTGTCATGA|ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4817 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 4 7 270 308 5800 ENST00000662410.1 ENST00000369076.8 downstream downstream duplicates(69),low_entropy(1),mismatches(14) GGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___...CTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4818 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(40%) |APG5(11%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 2 3 273 130 5800 ENST00000651587.1 ENST00000369076.8 downstream downstream duplicates(67),mismatches(15) GCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG___ATGGGGAAAAAAAGAATCAAGTGATGATTCATGGAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4819 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106248244:- chr6:106493298-106773666:- chr6:106696119:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(57%) |APG5(47%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 3 5 267 1930 5193 ENST00000651587.1 ENST00000636437.1 downstream downstream duplicates(67),mismatches(15) CCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACAGATTTGACCAGTTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGTTATATCCCCTTTAGAATATATCAG___ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4821 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 815 TRUE 294 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106293106:- chr6:106493298-106773666:- chr6:106740981:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Autophagy_protein_Apg5_(99%) |APG5(82%),SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 1 1 268 1930 4523 ENST00000651587.1 ENST00000636437.1 downstream downstream duplicates(67),mismatches(15) CCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCATTATCCAATTGGTTTGCTATTTGATCTTCTTGCATCAAGTTCAGCTCTTCCTTGGAACATCACAGTACATTTTAAG...ACAAGCAACTCTGGATGGGATTGCAAAATG___ACAGATTTGACCAGTTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4822 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 421 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113803877:- chr11:113668596-113746294:- chr11:113674599:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none |TPR_3(100%) 15 53 157 2858 1045 ENST00000316851.12 ENST00000696973.1 downstream downstream duplicates(73),low_entropy(3),mismatches(13) GCGTGAACGCAGCTCGGCTGCCGCTGGCAGGAAACAATTCTGCAAAAATAATCATACTCAGCCTGGCAATTGTCTGCCCCTAGGTCTGTCGCTCAGCCGCCGTCCACACTCGCTGCAGGGGGGGGGGCACAGAATTTACCGCGGCAAGAACATCCCTCCCAGCCAGCAGATTACAATGCTGCAAACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAG|AAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAA___GTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTG___GAGCTGAATGCCAAAG MLQTKDLIWTLFFLGTA|eva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4823 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 422 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113803281:- chr11:113668596-113746294:- chr11:113674003:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none |TPR_3(4%) 38 36 115 2858 1328 ENST00000316851.12 ENST00000696973.1 downstream downstream duplicates(65),low_entropy(2),mismatches(11) GCGTGAACGCAGCTCGGCTGCCGCTGGCAGGAAACAATTCTGCAAAAATAATCATACTCAGCCTGGCAATTGTCTGCCCCTAGGTCTGTCGCTCAGCCGCCGTCCACACTCGCTGCAGGGGGGGGGGCACAGAATTTACCGCGGCAAGAACATCCCTCCCAGCCAGCAGATTACAATGCTGCAAACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAG|GTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTG___GAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTGATCATCC...___AAAATCTGCAGCTGTGCCTAG MLQTKDLIWTLFFLGTA|gtkrhfptwymptramlpc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4824 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 423 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113799415:- chr11:113668596-113746294:- chr11:113670137:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 19 28 25 2858 1601 ENST00000316851.12 ENST00000696973.1 downstream downstream duplicates(21),low_entropy(1),mismatches(1) GCGTGAACGCAGCTCGGCTGCCGCTGGCAGGAAACAATTCTGCAAAAATAATCATACTCAGCCTGGCAATTGTCTGCCCCTAGGTCTGTCGCTCAGCCGCCGTCCACACTCGCTGCAGGGGGGGGGGCACAGAATTTACCGCGGCAAGAACATCCCTCCCAGCCAGCAGATTACAATGCTGCAAACTAAGGATCTCATCTGGACTTTGTTTTTCCTGGGAACTGCAG|AAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACTATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAAGCTCCCACATGTTCAAGGCCCATTCTGGTTCCTGGCTGCCTGCCTCTTGCACAGAAGTTCGTTGTCATAGTGCTCACCTTGGGAAAAGGATTAGGTGGGCACATAAGATTCCGATCAGACC MLQTKDLIWTLFFLGTA|eNLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4826 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128048609:+ chr8:128806772-129199347:+ chr8:129060855:+ CASC11 ENSG00000249375.8 lncRNA - + chr8:127686343-127738987:- chr8:127707284:+ chr8:128698588-128751233:- chr8:128719529:+ chr8:128049844,chr8:128049848,chr8:128049825,chr8:128049842 chr8:127702609,chr8:127702613,chr8:127702609,chr8:127702604 NA NA chr8:129062090,chr8:129062094,chr8:129062071,chr8:129062088 chr8:128714854,chr8:128714858,chr8:128714854,chr8:128714849 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 35 22 127 73 257 ENST00000663461.1 unknown downstream upstream duplicates(42),mismatches(9) GGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG___...CTGGACCTCTCCCAAGACATGTGACAGAG...GCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGG...___GCTACAGAGAAACAAGGAGACGGGAGAGCCTTGAAATGGACCTTCAAGATTACAATGTGTAGCTGACATTGTCAGTTAAGTTGGGCAGATCTGACTTCGCTGATTAAGTGGATGTATGAGCCGATCCTCCCCAGAAGCTGGGATCAGCTTCCCCATCTGATG|GGCGCCAATCTTTCCAAGGATAACCACAAAGTGCAAGCAAAAATAATGAAAAAGGAAAGAAAGAAAGAAAATCTGTATGCAAACCCAGGTTGTCATTATCTGGCGTTGTTTTCGGCCATTCTTGTCTTCTGACTCCTACCTGGCACACAGATCACTCCTGCCCACTCCTGCCCATTACTCTCTATCTTGTACACGCCTTGCTGGTACATATGGAGGACCATGGAAGAAAAGCATTGCTGTAAATTTCCTCCTTCTCAAGGAATCCTGCTCCCTGAGTTTCTGCTTAAGTGACTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4827 SLC29A1::SOBP ENSG00000112759.19::ENSG00000112320.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC29A1 ENSG00000112759.19 protein_coding + + chr6:44219553-44234142:+ chr6:44219782:+ chr6:44187290-44201879:+ chr6:44187519:+ SOBP ENSG00000112320.12 protein_coding + - chr6:107490106-107661306:+ chr6:107516292:- chr6:107811310-107982510:+ chr6:107837496:- chr6:44220651,chr6:44220702,chr6:44220698,chr6:44220696,chr6:44220688,chr6:44220695,chr6:44220698,chr6:44220688,chr6:44220687,chr6:44220692 chr6:107516391,chr6:107516391,chr6:107516395,chr6:107516395,chr6:107516395,chr6:107516395,chr6:107516394,chr6:107516394,chr6:107516395,chr6:107516394 NA NA chr6:44188388,chr6:44188439,chr6:44188435,chr6:44188433,chr6:44188425,chr6:44188432,chr6:44188435,chr6:44188425,chr6:44188424,chr6:44188429 chr6:107837595,chr6:107837595,chr6:107837599,chr6:107837599,chr6:107837599,chr6:107837599,chr6:107837598,chr6:107837598,chr6:107837599,chr6:107837598 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 17 36 123 912 228 ENST00000651428.1 unknown downstream downstream duplicates(44),mismatches(17) TGGCTGCGGAGCTCTGGGCGGGCGCTGGGGTCGCCTGTTGCAGCCTCTCTTCCGCCCGGCGGCCCACACCGGTCAGGCCCGGCGCGGGCTGCGCTCTCCAGCTGTGGCTATGGCCCCAGCCCCGAGATGAGGAGGGAGAGAACTAGGGGCCCGCAGGCCTGGGAATTTCCGTCCCCCACCAAGTCCGGATGCTCACTCCAAAGTCTCAGCAG|ACTAGGTTTTGCCGTGAAGGCTGGGCTGGTCTCGAACTCCTGTCGTCAAGTGATCTGCCTGCCTTGGACTCCCAAAGTACTACTATTACAAGCATGAGCCATTGTGCCTGGCCCATAATGATCATCTTAATCTCATTCTTGATATCAAGAGGAAAGTTTTCAATACTTCACTATTACGTAATATTGGCTGTGGAGTGTTCTGTTGATAACCTTTGGACAGATTAAGGAAGTTCTATTCTATTCCTCCTTTGCCAAAAGTTTTTTTTAATCATTTATAGTGCTAAATTTTATCAAAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4828 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 424 TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 8 31 99 1930 384 ENST00000651587.1 ENST00000633556.3 downstream upstream duplicates(35),mismatches(14) GAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAGAAACAGTAGAAACGGGTTAGAGAGTCCCACCAGATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4829 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 2 1 117 129 384 ENST00000656491.1 ENST00000633556.3 downstream upstream duplicates(32),mismatches(10) ACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4830 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818998:+ chr8:128806772-129199347:+ chr8:128831244:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 1 0 117 52 384 ENST00000651587.1 ENST00000633556.3 downstream upstream duplicates(32),mismatches(10) GAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCT...CGTGATCATAGCTCACAACAGCCTCTGTCTGCCAGGCTCAAGGGATACTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTTGCAG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4831 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 0 1 117 716 384 ENST00000651587.1 ENST00000633556.3 downstream upstream duplicates(32),mismatches(10) CCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4832 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 0 3 101 308 384 ENST00000662410.1 ENST00000633556.3 downstream upstream duplicates(29),mismatches(10) GTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4833 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 817 TRUE 296 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 1 0 101 130 384 ENST00000651587.1 ENST00000633556.3 downstream upstream duplicates(27),mismatches(10) GTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAttgTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG___TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4834 CRYBG1::MTRES1 ENSG00000112297.18::ENSG00000130349.10 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451832:+ chr6:106808592-107019892:+ chr6:106899707:+ MTRES1 ENSG00000130349.10 protein_coding + - chr6:107028199-107051586:+ chr6:107044548:- chr6:107349403-107372790:+ chr6:107365752:- chr6:106452382 chr6:107049783 NA NA chr6:106900257 chr6:107370987 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 5 60 62 488 351 ENST00000633556.3 unknown downstream downstream duplicates(41),low_entropy(1),mismatches(4),multimappers(3) AGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAG|GGAGAAGCTTCATCAGAAGATCATTAAGGCTGCAAAAGTGAAAGTGCCTGTGTGTCTGAAGCCTGTAGCTGATTCCCACCAGCTTGACGTGGAGGACCACAAAGGACCTCAGAGAAAGAAGAGGAGCCAGAGGGAAAATTTGGGACAGCATTAATTGAGTTACTAGCAGAGTAAGAGACGAAAACATCTGGCTGTCATTTTAG___CCCCGTCTTCAGGACAACATCATACCGAAAAGACTGAACTGCTTTTTCCAGGTCTTTATAGTTTTTGACTACAGT ALDVVDGKYVVRDSQEFPLHCGESQFFHTTSEALGSLLLESGIFKK|geassedh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4836 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 11 26 76 6248 187 ENST00000317357.10 ENST00000651587.1 downstream upstream duplicates(23),mismatches(11) TGAATTAAAAGATGGTGAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGCAGCACATTTCTGTTCTCAAAG___AAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTTCACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGGGTCAAAGGATCATGGCAGTGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCAG|GCCTCCAGGTGTCTGCATTCTGATCCTTGAAGAGTTCATGGACCTAAGTTAAGAACCTCTCCTCAAGAGACTGAATGCAGGCAGAGATGGCTTATTGGTTCATCACAGGTTATGTGAACTACCCACT___ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGC ELKDGEDIEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPA|glqvsaf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4837 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 5 2 37 6248 305 ENST00000317357.10 ENST00000651587.1 downstream upstream duplicates(6),mismatches(5) GGTGAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGCAGCACATTTCTGTTCTCAAAG___AAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTTCACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGGGTCAAAGGATCATGGCAGTGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCAG|ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGCCAACATCACAGGGGACAACTCCTGAGCCTGTGCTAGGAACAGCCAGTCTTCCTGAATTCATGATAAAGTAAGAGGTAGAACCaTGGCCAATTGTCTTTGGGAGAAAGTGGGATCAAGGACAACTCCAGGATTCTGCCTGAGATGGGACACACTAG GEDIEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPA|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4838 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107490712:+ chr6:107811310-107982510:+ chr6:107811916:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 6 4928 187 ENST00000317357.10 ENST00000651587.1 downstream upstream duplicates(2),mismatches(1) CACCACCTCCACCGCCGCCGCCGCCGCCACCACCACCGCCGGCGGCGGCAGCAGCCATTTCATCTCCACAGAAACCAGACACAAAAACATGGCAGAAATGGAGAAAGAAGGGAGACCTCCCGAAAATAAACGGAGCAGGAAGCCGGCTCACCCAGTGAAAAGGGAGATCAATGAGGAGATGAAG|GCCTCCAGGTGTCTGCATTCTGATCCTTGAAGAGTTCATGGACCTAAGTTAAGAACCTCTCCTCAAGAGACTGAATGCAGGCAGAGATGGCTTATTGGTTCATCACAGGTTATGTGAACTACCCACT___ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCtCCCAGCCAGAAGTGGTG MAEMEKEGRPPENKRSRKPAHPVKREINEEMK|asrclhsdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4839 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107490712:+ chr6:107811310-107982510:+ chr6:107811916:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 0 3 4928 305 ENST00000317357.10 ENST00000651587.1 downstream upstream duplicates(2) GTCCGGCCCCGCCAGCACCGCTACCTCCGCCAGCCTCGCCACCATCAGCACCACCTCCACCGCCGCCGCCGCCGCCACCACCACCGCCGGCGGCGGCAGCAGCCATTTCATCTCCACAGAAACCAGACACAAAAACATGGCAGAAATGGAGAAAGAAGGGAGACCTCCCGAAAATAAACGGAGCAGGAAGCCGGCTCACCCAGTGAAAAGGGAGATCAATGAGGAGATGAAG|ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGCCAACATCACAGGGGACAACTCCTGAGCCTGTGCTAGGAACAGCCAGTCTTCCTGAATTCATGATAAAGTAAGAGGTAGAACCaTGGCCAATTGTCTTTGGGAGAAAGTGG MAEMEKEGRPPENKRSRKPAHPVKREINEEMK|ikkrshmedk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4841 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 425 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113360008:+ chr11:113185301-113254266:+ chr11:113230730:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tetratricopeptide_repeat(100%)|Protein_similar_to_CwfJ_C-terminus_1(100%),Protein_similar_to_CwfJ_C-terminus_2(100%) TPR_1(100%),TPR_2(100%),TPR_6(100%),TPR_8(100%)|CwfJ_C_1(100%),CwfJ_C_2(100%) 17 25 62 522 575 ENST00000393020.5 ENST00000282251.10 downstream downstream duplicates(19),mismatches(2) GGAAACCTCAGTGCTGAGCCCACTACCCGAAGACACATGGCGGCCTGTGAGGAATTTGGGGATGGCTGCTTGAGCCTCCTG___GCCAGGTGTGAGGAGGATGTGGACCTGTTCAGAGAGGTTATCTACACACTCCTGGGACTCATGATGAACCTGTGTCTTCAGGCTCCCTTTGTCTCTGAG___GTTTGGGCTGTGGAGGTGAGCAGAAGGTGCCTGTCTTTACTAAACAGCCAGGATGGAGGAATCCTGACA|AATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATG___GTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACA GNLSAEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFREVIYTLLGLMMNLCLQAPFVSEVWAVEVSRRCLSLLNSQDGGILT|NEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4842 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 426 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113352207:+ chr11:113185301-113254266:+ chr11:113222929:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tetratricopeptide_repeat(100%)|Protein_similar_to_CwfJ_C-terminus_1(100%),Protein_similar_to_CwfJ_C-terminus_2(100%) TPR_1(100%),TPR_2(100%),TPR_6(100%),TPR_8(100%)|CwfJ_C_1(100%),CwfJ_C_2(100%) 12 17 26 605 575 ENST00000393020.5 ENST00000282251.10 downstream downstream duplicates(14),low_entropy(1),mismatches(4) CCAGGCTGTTGGCCGCCCTCTTGTCCTCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGCTGCTGCATCTCGCCCAGACTGAGAGCGGACGGAGCC...CCTGACCAG___ATTATTGGAAGCGCTGGTGTCATTTCTTGATTTCTCGGATAAGGAGGCCAACACTGCTATGGGACTGTTCACAGACTTGGCTCTGGAAGAAAG___ATTCCAAGTCTGGTTCCAGGCCAACCTTCCAGGTGTTCTCCCTGCACTCACAGGCGTTCTG___AAGACAGATCCCAAGGTAAGCAGCTCCTCGGCTCTGTGCCAGTGCATTGCCATCATGGGAAACCTCAGTGCTGAGCCCACTACCCGAAGACACATGGCGGCCTGTGAGGAATTTGGGGATGGCTGCTTGAGCCTCCTG|AATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATG___GTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACA LTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLL|NEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4843 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 427 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113359461:+ chr11:113185301-113254266:+ chr11:113230183:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tetratricopeptide_repeat(100%)|Protein_similar_to_CwfJ_C-terminus_1(100%),Protein_similar_to_CwfJ_C-terminus_2(100%) TPR_1(100%),TPR_2(100%),TPR_6(100%),TPR_8(100%)|CwfJ_C_1(100%),CwfJ_C_2(100%) 1 3 42 576 575 ENST00000393020.5 ENST00000282251.10 downstream downstream duplicates(13),mismatches(1) TGCACTCACAGGCGTTCTG___...GCTGAGCCCACTACCCGAAGACACATGGCGGCCTGTGAGGAATTTGGGGATGGCTGCTTGAGCCTCCTG___GCCAGGTGTGAGGAGGATGTGGACCTGTTCAGAGAGGTTATCTACACACTCCTGGGACTCATGATGAACCTGTGTCTTCAGGCTCCCTTTGTCTCTGAG|AATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATG___GTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGA AEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFREVIYTLLGLMMNLCLQAPFVSE|NEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4844 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 428 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113351299:+ chr11:113185301-113254266:+ chr11:113222021:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tetratricopeptide_repeat(100%)|Protein_similar_to_CwfJ_C-terminus_1(100%),Protein_similar_to_CwfJ_C-terminus_2(100%) TPR_1(100%),TPR_2(100%),TPR_6(100%),TPR_8(100%)|CwfJ_C_1(100%),CwfJ_C_2(100%) 4 2 10 707 575 ENST00000393020.5 ENST00000282251.10 downstream downstream duplicates(3) ATGCAGTTGAAGAAATGGTCTGTGTGTCTGTTCTCAAGCTCTGGCAAGCAGTGTGCAGCAGGAACG___AGGAAAACCAGCGTGTGCTAGTGATACACCATGACAGGGCCAGGCTGTTGGCCGCCCTCTTGTCCTCCAAGGTCCTGGCCATCCGGCAGCAGAGCTTTGCCCTGCTGC...GCGGACGGAGCCTGATCATCAACCACCTTGACCTGACCAG___ATTATTGGAAGCGCTGGTGTCATTTCTTGATTTCTCGGATAAGGAGGCCAACACTGCTATGGGACTGTTCACAGACTTGGCTCTGGAAGAAAG___ATTCCAAGTCTGGTTCCAGGCCAACCTTCCAGGTGTTCTCCCTGCACTCACAGGCGTTCTG|AATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATG___GTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACAGCAGAAAATCAAAACAAGCTCTTTATGAGAATGGCATCTAAG___TTTATGGGAAAAACAGATGGAGACT GRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVL|NEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4845 GRIA4::ARHGAP20 ENSG00000152578.15::ENSG00000137727.13 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GRIA4 ENSG00000152578.15 protein_coding + + chr11:105609535-105982090:+ chr11:105612434:+ chr11:105480262-105852817:+ chr11:105483161:+ ARHGAP20 ENSG00000137727.13 protein_coding - + chr11:110577042-110713189:- chr11:110588138:+ chr11:110447766-110583912:- chr11:110458862:+ chr11:105744478,chr11:105744478,chr11:105744477 chr11:110577407,chr11:110577423,chr11:110577403 NA NA chr11:105615204,chr11:105615204,chr11:105615203 chr11:110448131,chr11:110448147,chr11:110448127 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Receptor_family_ligand_binding_region(12%)| ANF_receptor(0%)| 23 21 52 307 70 ENST00000525187.6 unknown downstream upstream duplicates(28),mismatches(5) TGAGGATTATTTCCAGACAGATTGTCTTGTTATTTTCTGGATTTTGGGGACTCGCCATGGGAGCCTTTCCGAGCAGCGTGCAAATAG___GTGGTCTCTTCATCCGAAACACAGATCAGGAATACACTGCTTTTCGATTAGCAATTTTTCTTCATAACACCAGCCCCAATGCGTCGGAAGCTCCTTTTAATTTGGTACCTCATGTGGACAACATTGAGACAGCCAACAGTTTTGCTGTAACAAACGCCT|CTGGAATAACAAGTTACGAAATACaACCATCATCACAGCTGAGAAGGATGTGAGAGCCGATTCTGCACTGCAATCACCAGCTCACAGCACTTAGTTGAATGTCTCCTCTCCTCCAAAACCAGAGCCAAGGCCATCAGCAGAACCCTCAAAGTCATCTGAGATGAGATACTGCAGGATTAAATATGAACTTTTCCTCAACGGTTTGATGGATCAAAGTTATAGTGTCTTCAGCAATTTTTATCCAATTATAGTTTGAAGAGTTAAGCTATAACTTAAACTTATATTTAAG RIISRQIVLLFSGFWGLAMGAFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNA|sgitsyeiqpssqlrrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4846 DNAJC3::HS6ST3 ENSG00000102580.15::ENSG00000185352.10 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 429 FALSE NA FALSE NA DNAJC3 ENSG00000102580.15 protein_coding + + chr13:95677139-95794988:+ chr13:95677337:+ chr13:96329393-96447242:+ chr13:96329591:+ HS6ST3 ENSG00000185352.10 protein_coding + + chr13:96090107-96839562:+ chr13:96832490:+ chr13:96742361-97491816:+ chr13:97484744:+ chr13:95690827,chr13:95690826 chr13:96522103,chr13:96522099 NA NA chr13:96343081,chr13:96343080 chr13:97174357,chr13:97174353 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Sulfotransferase_family(64%) |Sulfotransfer_2(0%) 14 19 47 64 45 ENST00000602402.6 ENST00000376705.4 downstream upstream duplicates(17),low_entropy(1),mismatches(3) CCGACGGCGGGCGGGCGCAGCTGCTGCCGGAGCGCCGGCGCGTGCTGGTGGGCCACACACCTTTCCTCCTCTTCACTCGCGAGCCCTCGGACATGGTGGCCCCCGGCTCCGTGACCAGCCGGCTGGGCTCGGTATTCCCCTTCCTGCTAGTCCTGGTGGATCTGCAGTACGAAG|GAATTTCTATTACATCACAATGTTACGGGATCCAGTGTCACGTTACCTGAGCGAGTGGAAACATGTCCAGAGAGGGGCCACTTGGAAAACCTCTCTTCATATGTGTGATGGAAGAAGCCCCACCCCAGATGAGCTGCCTACCTGCTACCCTGGGGATGACTGGTCTGGGGTCAGCTTGCGGGAGTTTATGGATTGCACCTACAACCTGGCTAACAATCGCCAGGTGCGCATGCTGGCTGACCTCAGCCTGGTGGGCTGCTATAACTTGACTTTCATGAACGAGAGTGAAAG MVAPGSVTSRLGSVFPFLLVLVDLQYE|gisitsqcygiqchvt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4847 ENSG00000286084::PVT1 ENSG00000286084.3::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 430 TRUE 820 TRUE 299 ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105404087:+ chr6:105851082-106036948:+ chr6:105851962:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ chr6:105404816,chr6:105404816,chr6:105404955,chr6:105404954,chr6:105404956,chr6:105404957,chr6:105404962,chr6:105404964,chr6:105404965,chr6:105404966,chr6:105404968,chr6:105404975,chr6:105404976,chr6:105404978,chr6:105404979,chr6:105404980,chr6:105404985,chr6:105404983,chr6:105404989,chr6:105404990,chr6:105404995,chr6:105404981,chr6:105404998,chr6:105405004,chr6:105405005,chr6:105404967,chr6:105405007,chr6:105405012,chr6:105405013,chr6:105405016,chr6:105405015,chr6:105405018,chr6:105405020,chr6:105405021,chr6:105405003,chr6:105405024,chr6:105405025,chr6:105405026,chr6:105404980,chr6:105404816,chr6:105404810,chr6:105404800 chr8:128125846,chr8:128125850,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877267,chr8:128125844,chr8:128125844,chr8:128125844 NA NA chr6:105852691,chr6:105852691,chr6:105852830,chr6:105852829,chr6:105852831,chr6:105852832,chr6:105852837,chr6:105852839,chr6:105852840,chr6:105852841,chr6:105852843,chr6:105852850,chr6:105852851,chr6:105852853,chr6:105852854,chr6:105852855,chr6:105852860,chr6:105852858,chr6:105852864,chr6:105852865,chr6:105852870,chr6:105852856,chr6:105852873,chr6:105852879,chr6:105852880,chr6:105852842,chr6:105852882,chr6:105852887,chr6:105852888,chr6:105852891,chr6:105852890,chr6:105852893,chr6:105852895,chr6:105852896,chr6:105852878,chr6:105852899,chr6:105852900,chr6:105852901,chr6:105852855,chr6:105852691,chr6:105852685,chr6:105852675 chr8:129138092,chr8:129138096,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889513,chr8:129138090,chr8:129138090,chr8:129138090 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 10 10 60 99 187 ENST00000701429.1 ENST00000651587.1 downstream upstream duplicates(17),mismatches(4) TTGAGCACCTACTGTTTATGGGAAGAAAAGATAATAGACAAGATACTTGACCTCAAACCCATGAAAATTTAATAGTTACATGTCATCATCCTCGGGCCAGCAGCGGTATGTGTTCTGGTCTTGCTTCCTGGACCACCCAGAAGAGACTTTATAGCCCCAGCCATCAGGGGTATAGTGTGTGCCCAGTGTGTTTTCTATCCCTGGCTTCCAAAAAGTCCTGGAAGAAAGAATAGGTGTGACCAGAAAGTCCTTCACCTCCGGAATCTAAGTGGATATG|GCCTCCAGGTGTCTGCATTCTGATCCTTGAAGAGTTCATGGACCTAAGTTAAGAACCTCTCCTCAAGAGACTGAATGCAGGCAGAGATGGCTTATTGGTTCATCACAGGTTATGTGAACTACCCACT___ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4848 ENSG00000286084::PVT1 ENSG00000286084.3::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 431 TRUE 820 TRUE 299 ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105404087:+ chr6:105851082-106036948:+ chr6:105851962:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ chr6:105404816,chr6:105404816,chr6:105404955,chr6:105404954,chr6:105404956,chr6:105404957,chr6:105404962,chr6:105404964,chr6:105404965,chr6:105404966,chr6:105404968,chr6:105404975,chr6:105404976,chr6:105404978,chr6:105404979,chr6:105404980,chr6:105404985,chr6:105404983,chr6:105404989,chr6:105404990,chr6:105404995,chr6:105404981,chr6:105404998,chr6:105405004,chr6:105405005,chr6:105404967,chr6:105405007,chr6:105405012,chr6:105405013,chr6:105405016,chr6:105405015,chr6:105405018,chr6:105405020,chr6:105405021,chr6:105405003,chr6:105405024,chr6:105405025,chr6:105405026,chr6:105404980,chr6:105404816,chr6:105404810,chr6:105404800 chr8:128125846,chr8:128125850,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877267,chr8:128125844,chr8:128125844,chr8:128125844 NA NA chr6:105852691,chr6:105852691,chr6:105852830,chr6:105852829,chr6:105852831,chr6:105852832,chr6:105852837,chr6:105852839,chr6:105852840,chr6:105852841,chr6:105852843,chr6:105852850,chr6:105852851,chr6:105852853,chr6:105852854,chr6:105852855,chr6:105852860,chr6:105852858,chr6:105852864,chr6:105852865,chr6:105852870,chr6:105852856,chr6:105852873,chr6:105852879,chr6:105852880,chr6:105852842,chr6:105852882,chr6:105852887,chr6:105852888,chr6:105852891,chr6:105852890,chr6:105852893,chr6:105852895,chr6:105852896,chr6:105852878,chr6:105852899,chr6:105852900,chr6:105852901,chr6:105852855,chr6:105852691,chr6:105852685,chr6:105852675 chr8:129138092,chr8:129138096,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889513,chr8:129138090,chr8:129138090,chr8:129138090 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 16 13 42 99 305 ENST00000701429.1 ENST00000651587.1 downstream upstream duplicates(17),mismatches(2) ATTGAGCACCTACTGTTTATGGGAAGAAAAGATAATAGACAAGATACTTGACCTCAAACCCATGAAAATTTAATAGTTACATGTCATCATCCTCGGGCCAGCAGCGGTATGTGTTCTGGTCTTGCTTCCTGGACCACCCAGAAGAGACTTTATAGCCCCAGCCATCAGGGGTATAGTGTGTGCCCAGTGTGTTTTCTATCCCTGGCTTCCAAAAAGTCCTGGAAGAAAGAATAGGTGTGACCAGAAAGTCCTTCACCTCCGGAATCTAAGTGGATATG|ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGCCAACATCACAGGGGACAACTCCTGAGCCTGTGCTAGGAACAGCCAGTCTTCCTGAATTCATGATAAAGTAAGAGGTAGAACCaTGGCCAATTGTCTTTGGGAGAAAGTGGGATCAAGGACAACTCCAGGATTCTGCCTGAGATGGGACACACTAGAGCATTACTTGGGAATGTAAATAATAATATCAAATTATTGAATGATTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4849 PVT1::ENSG00000286084 ENSG00000249859.14::ENSG00000286084.3 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 821 TRUE 300 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105478695:+ chr6:105851082-106036948:+ chr6:105926570:+ chr8:127877216,chr8:127877296,chr8:127877298,chr8:127877300,chr8:127877301,chr8:127877304,chr8:127877305,chr8:127877308,chr8:127877240,chr8:127877242,chr8:127877243,chr8:127877244,chr8:127877245,chr8:127877246,chr8:127877251,chr8:127877247,chr8:127877252,chr8:127877253,chr8:127877254,chr8:127877255,chr8:127877256,chr8:127877259,chr8:127877260,chr8:127877258,chr8:127877265,chr8:127877268,chr8:127877269,chr8:127877261,chr8:127877272,chr8:127877267,chr8:127877275,chr8:127877274,chr8:127877277,chr8:127877282,chr8:127877266,chr8:127877280,chr8:127877284,chr8:127877286,chr8:127877287,chr8:127877290,chr8:127877289,chr8:127877281 chr6:105404793,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942 NA NA chr8:128889462,chr8:128889542,chr8:128889544,chr8:128889546,chr8:128889547,chr8:128889550,chr8:128889551,chr8:128889554,chr8:128889486,chr8:128889488,chr8:128889489,chr8:128889490,chr8:128889491,chr8:128889492,chr8:128889497,chr8:128889493,chr8:128889498,chr8:128889499,chr8:128889500,chr8:128889501,chr8:128889502,chr8:128889505,chr8:128889506,chr8:128889504,chr8:128889511,chr8:128889514,chr8:128889515,chr8:128889507,chr8:128889518,chr8:128889513,chr8:128889521,chr8:128889520,chr8:128889523,chr8:128889528,chr8:128889512,chr8:128889526,chr8:128889530,chr8:128889532,chr8:128889533,chr8:128889536,chr8:128889535,chr8:128889527 chr6:105852668,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 1 0 0 1930 25 ENST00000651587.1 ENST00000663354.2 downstream upstream none CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACC...ACACGGCCAGATCTGCCCTCCA|GGAGAAATGTGGACATGAGAGGGGCACAGAGGAAGACTACCTGAAGACACACAGAGAGAAGGTGACCACGTGGTTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4850 PVT1::ENSG00000286084 ENSG00000249859.14::ENSG00000286084.3 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 821 TRUE 300 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105534980:+ chr6:105851082-106036948:+ chr6:105982855:+ chr8:127877216,chr8:127877296,chr8:127877298,chr8:127877300,chr8:127877301,chr8:127877304,chr8:127877305,chr8:127877308,chr8:127877240,chr8:127877242,chr8:127877243,chr8:127877244,chr8:127877245,chr8:127877246,chr8:127877251,chr8:127877247,chr8:127877252,chr8:127877253,chr8:127877254,chr8:127877255,chr8:127877256,chr8:127877259,chr8:127877260,chr8:127877258,chr8:127877265,chr8:127877268,chr8:127877269,chr8:127877261,chr8:127877272,chr8:127877267,chr8:127877275,chr8:127877274,chr8:127877277,chr8:127877282,chr8:127877266,chr8:127877280,chr8:127877284,chr8:127877286,chr8:127877287,chr8:127877290,chr8:127877289,chr8:127877281 chr6:105404793,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942,chr6:105404942 NA NA chr8:128889462,chr8:128889542,chr8:128889544,chr8:128889546,chr8:128889547,chr8:128889550,chr8:128889551,chr8:128889554,chr8:128889486,chr8:128889488,chr8:128889489,chr8:128889490,chr8:128889491,chr8:128889492,chr8:128889497,chr8:128889493,chr8:128889498,chr8:128889499,chr8:128889500,chr8:128889501,chr8:128889502,chr8:128889505,chr8:128889506,chr8:128889504,chr8:128889511,chr8:128889514,chr8:128889515,chr8:128889507,chr8:128889518,chr8:128889513,chr8:128889521,chr8:128889520,chr8:128889523,chr8:128889528,chr8:128889512,chr8:128889526,chr8:128889530,chr8:128889532,chr8:128889533,chr8:128889536,chr8:128889535,chr8:128889527 chr6:105852668,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817,chr6:105852817 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 1 0 0 1930 2 ENST00000651587.1 ENST00000651879.1 downstream upstream none GCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTC...ATCTGCCCTCCA|AGTTTCGCTCCTTGTTGCCCAGGCTGCAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGTGCTTCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4858 PRDM1::PVT1 ENSG00000057657.17::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PRDM1 ENSG00000057657.17 protein_coding + + chr6:105993463-106109939:+ chr6:106081801:+ chr6:106441338-106557814:+ chr6:106529676:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128119197:+ chr8:128806772-129199347:+ chr8:129131443:+ NA NA NA NA NA NA NA NA sense sense unknown intron intron translocation medium none none none 6 1 5 213 13 unknown unknown downstream upstream duplicates(4),mismatches(1) AAAGAGTCTGGGAGAGATGCCCTTTCTGCTTCCTGACCTCTGGTCCTCAGTTTCCTCAGCAGGAAAATGAAGTGTAGAAGGGGATATATGGTCTTCGACTTAGATTGGATACTAAATCCCCTTTGGAGCAGAATGGGAGTTGGGGGCTGGGGGTGGTCAAATGATTTCACTATTAACCTTTATGATTCTGTCTCTTCTATCCTAACTTACCTTGGCGTGAAGAAAGTCAAGCCTCTACAGTCTTGTTCTTCCCTTAGAAAGGATGAGAAGAAATCaTCAGTCCCATTTTAAATAAAATCACCTGTGTCCTTTGGTTAATATTCTGTGATTTCAGGGAAG|GCTCCTCACTTCCTAGATGGGATGGCGGCCAGGCAGAGACGCTCCTCACTTTCCAGACTGGGCAGCCAGGCAGAGGGGCTCCTCACATCCCAGATGATGGGCGGCCAGGCGGAGATGCTCCTCACTTCCCAGACGGGGTGGCGGCCAGGCAGAGGCTGCAATCTCAGCACTTTGGGAGGCCAAGGCAGGCTGATTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PR domain containing 1, with ZNF domain 1 Yes DLBCL leukaemia_lymphoma TSG large_deletion, nonsense, missense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 4859 SETD2::SCAP ENSG00000181555.22::ENSG00000114650.21 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 823 TRUE 301 SETD2 ENSG00000181555.22 protein_coding - - chr3:47016428-47164113:- chr3:47163854:- chr3:47057918-47205603:- chr3:47205344:- SCAP ENSG00000114650.21 protein_coding - - chr3:47413681-47477126:- chr3:47443091:- chr3:47455171-47518616:- chr3:47484581:- chr3:47134192,chr3:47134200 chr3:47467533,chr3:47467538 NA NA chr3:47175682,chr3:47175690 chr3:47509023,chr3:47509028 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Sterol-sensing_domain_of_SREBP_cleavage-activation(100%),WD_domain__G-beta_repeat(100%) |Patched(100%),Sterol-sensing(100%),WD40(100%) 3 14 18 108 238 ENST00000409792.4 ENST00000265565.10 upstream downstream duplicates(2),mismatches(6) CCGCGGTCGGACCTGCGGCCTCCTCCCCTCCCCTCCCCCGCGTCGCCCTGCTGCGGGGAGGGGGCTCGCGTCGCCGTCTCCAGCCGCTCCCGATGAAGCAGCTGCAGCCGCAGCCGCCTCCGAAGATGGGGGATTTCTACGACCCGGAGCACCCGACCCCTGA|GTACCTGCACATGTTGTTCTTTGTCAGTGCTGTCAAGTGTGTGCCAGGGTGATCCATGGTCACTTTCCGGGATGGCAGCAAGGTGACTTCGGCTGAGGATGACCCTGACTGAAAGGCTGCGTGAGAAGATATCTCGGGCCTTCTACAACCATGGGCTCCTCTGTGCATCCTATCCCATCCCCATCATCCTCTTCACAGGGTTCTGCATCTTAGCCTGCTG___CTACCCACTGCTGAAACTCCCCTTGCCAGGAACAGGACCTGTGGAATTCACCACCCCTGTGAAGGATTACTCGCCCCCACCTGTGGACTCTGACCGCAAACAAGGAGAGCCTACTGA MKQLQPQPPPKMGDFYDPEHPTPe|ylhmlffvsavkcvpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 47139445 FALSE 47484581 TRUE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE SET domain containing 2 1 Yes clear cell renal carcinoma epithelial TSG nonsense, frameshift, splice_site, missense FALSE NA NA NA NA NA NA NA NA NA 4860 SETD2::SCAP ENSG00000181555.22::ENSG00000114650.21 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 823 TRUE 301 SETD2 ENSG00000181555.22 protein_coding - - chr3:47016428-47164113:- chr3:47163854:- chr3:47057918-47205603:- chr3:47205344:- SCAP ENSG00000114650.21 protein_coding - - chr3:47413681-47477126:- chr3:47435137:- chr3:47455171-47518616:- chr3:47476627:- chr3:47134192,chr3:47134200 chr3:47467533,chr3:47467538 NA NA chr3:47175682,chr3:47175690 chr3:47509023,chr3:47509028 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Sterol-sensing_domain_of_SREBP_cleavage-activation(85%),WD_domain__G-beta_repeat(100%) |Patched(100%),Sterol-sensing(100%),WD40(100%) 1 2 5 108 447 ENST00000409792.4 ENST00000441517.6 upstream downstream mismatches(3) CGCGGTCGGACCTGCGGCCTCCTCCCCTCCCCTCCCCCGCGTCGCCCTGCTGCGGGGAGGGGGCTCGCGTCGCCGTCTCCAGCCGCTCCCGATGAAGCAGCTGCAGCCGCAGCCGCCTCCGAAGATGGGGGATTTCTACGACCCGGAGCACCCGACCCCTGA|CTACCCACTGCTGAAACTCCCCTTGCCAGGAACAGGACCTGTGGAATTCACCACCCCTGTGAAGGATTACTCGCCCCCACCTGTGGACTCTGACCGCAAACAAGGAGAGCCTACTGAGCAGCCTGAGTGG___TATGTGGGTGCCCCGGTGGCTTATGTCCAGCAGATATTTGTGAAGTCCTCAGTGTTTCCCTGGCACAAGAACCTCCTGGCAGTAGAT...GGGCAGCCTGCGTGCCCGCCTGATGCTTCTGCACCCCAGCCCCAACTGCAGCCTTCGGGCGGAGAGCCTGGTCCACGTGCACTTCAAGGAGGAGATTGGTG MKQLQPQPPPKMGDFYDPEHPTPd|YPLLKLPLPGTGPVEFTTPVKDYSPPPVDSDRKQGEPTEQPEWyvgapvayvqqifvkssvfpwhknllav NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 47139445 FALSE 47484581 FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE SET domain containing 2 1 Yes clear cell renal carcinoma epithelial TSG nonsense, frameshift, splice_site, missense FALSE NA NA NA NA NA NA NA NA NA 4861 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 438 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105769595:- chr6:106127253-106340916:- chr6:106217470:- chr8:128125793,chr8:128125792,chr8:128125790,chr8:128141394,chr8:128141394,chr8:128125793,chr8:128125789,chr8:128125794 chr6:105796225,chr6:105796225,chr6:105796216,chr6:105796064,chr6:105796076,chr6:105796224,chr6:105796224,chr6:105796201 NA NA chr8:129138039,chr8:129138038,chr8:129138036,chr8:129153640,chr8:129153640,chr8:129138039,chr8:129138035,chr8:129138040 chr6:106244100,chr6:106244100,chr6:106244091,chr6:106243939,chr6:106243951,chr6:106244099,chr6:106244099,chr6:106244076 NA NA sense sense unknown exon/splice-site intron translocation high none none none 1 3 31 1930 31 ENST00000651587.1 ENST00000644129.1 downstream downstream duplicates(6),mismatches(3) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCTGTATGAGAAGCACGGCACCAGCATCTTTTTCTGGTGAGGACTTCAGGCTGCTTCCACTCATGGTTGAAGATGAAGGAGAGCCAGCATGTGTGGAGATCACATG___...GTTGATTCTTCTATGTCTTGGTTGGAATAAAAGGAAG...___AGAAGCAAGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4862 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 439 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 14 1 19 1930 139 ENST00000651587.1 ENST00000644129.1 downstream downstream duplicates(4),mismatches(2) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGATTCTTCTATGTCTTGGTTGGAATAAAAGGAAGATATGTGCATTACTAGAAGCAACGTACAACGAGAGAGCAAAGGAAAGTAGCTCAGACCCAAGGAAGATCAAATTAAG___ATCTCCCAGCCATGGATACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4863 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 440 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 4 0 22 308 139 ENST00000657183.1 ENST00000644129.1 downstream downstream duplicates(6),low_entropy(1),mismatches(2) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGATTCTTCTATGTCTTGGTTGGAATAAAAGGAAGATATGTGCATTACTAGAAGCAACGTACAACGAGAGAGCAAAGGAAAGTAGCTCAGACCCAAGGAAGATCAAATTAAG___ATCTCCCAGCCATGGATACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4865 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128120544:+ chr8:128806772-129199347:+ chr8:129132790:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128125793,chr8:128125792,chr8:128125790,chr8:128141394,chr8:128141394,chr8:128125793,chr8:128125789,chr8:128125794 chr6:105796225,chr6:105796225,chr6:105796216,chr6:105796064,chr6:105796076,chr6:105796224,chr6:105796224,chr6:105796201 NA NA chr8:129138039,chr8:129138038,chr8:129138036,chr8:129153640,chr8:129153640,chr8:129138039,chr8:129138035,chr8:129138040 chr6:106244100,chr6:106244100,chr6:106244091,chr6:106243939,chr6:106243951,chr6:106244099,chr6:106244099,chr6:106244076 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 1 0 24 22 139 ENST00000650846.1 ENST00000644129.1 downstream downstream duplicates(4),mismatches(2) CTCCTCACTTCCCAGACGGGGTGGCGGCCAGGCAGAGGCTGCAATCTCAGCACTTTGGGAGGCCAAGGCAGGCTGATTCTG___GAGCCTGCACTGGCCTACTG...ATGTACAATGAGCCCAATCAGCACCACTTGGAGCAGAAGAACTGCCTAG|GTTGATTCTTCTATGTCTTGGTTGGAATAAAAGGAAGATATGTGCATTACTAGAAGCAACGTACAACGAGAGAGCAAAGGAAAGTAGCTCAGACCCAAGGAAGATCAAATTAAG___ATCTCCCAGCCATGGATACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4866 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 1 0 22 130 139 ENST00000651587.1 ENST00000644129.1 downstream downstream duplicates(4),mismatches(2) GGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGT...GACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGATTCTTCTATGTCTTGGTTGGAATAAAAGGAAGATATGTGCATTACTAGAAGCAACGTACAACGAGAGAGCAAAGGAAAGTAGCTCAGACCCAAGGAAGATCAAATTAAG___ATCTCCCAGCCATGGATACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4867 IQCA1::KYNU ENSG00000132321.17::ENSG00000115919.15 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 441 FALSE NA FALSE NA IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236507257:- chr2:237232790-237416178:- chr2:237415900:- KYNU ENSG00000115919.15 protein_coding + + chr2:142877657-143055833:+ chr2:142918609:+ chr2:143635226-143813402:+ chr2:143676178:+ chr2:236501744,chr2:236501750 chr2:142894104,chr2:142894098 NA NA chr2:237410387,chr2:237410393 chr2:143651673,chr2:143651667 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Aminotransferase_class-V(100%) |Aminotran_5(100%) 7 5 14 62 19 ENST00000309507.9 ENST00000264170.9 upstream upstream duplicates(7) TGCGAAGCAAACCCGGCCTCACCTTTTCCTGCCCGAAGCAGAAGATTCTCGCAGTCCTGGTTTCTCCCTCCAGAAGACCCCCCACCCAAATCCTCTGTAGCTCCTGGTAGTGCCCTGACCCCTGCTGCCACCGTCCTTCAGAGAGCAACGGAAGAGCTTCCCGGAGGGCGAGGAAAAGAGGGAAAGTAGCCAGCAATGTCGAACGC|TTGATTTATCATTAGTGAATAAAGATGAAAATGCCATCTATTTCTTGGGAAATTCTCTTGGCCTTCAACCAAAAATGGTTAAAACATATCTTGAAGAAGAACTAGATAAGTGGGCCAAAAT___AGCAGCCTATGGTCATGAAGTGGGGAAGCGTCCTTGGATTACAGGAGATGAGAGTATTGTAGGCCTTATGAAGGACATTGTAGGT MSNa|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4868 NPEPPSP1::KIAA1217 ENSG00000291088.1::ENSG00000120549.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 825 TRUE 303 NPEPPSP1 ENSG00000291088.1 lncRNA - - chr17:38195703-38257381:- chr17:38219046:- chr17:36351759-36413388:- chr17:36375100:- KIAA1217 ENSG00000120549.19 protein_coding + + chr10:23694746-24547848:+ chr10:23877406:+ chr10:23983675-24836777:+ chr10:24166335:+ chr17:38218814,chr17:38218817 chr10:23779911,chr10:23779908 NA NA chr17:36374867,chr17:36374870 chr10:24068840,chr10:24068837 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none |Actin_interacting_protein_3(100%) |AIP3(100%) 6 7 12 107 61 ENST00000649858.3 ENST00000376462.5 upstream upstream duplicates(7),mismatches(6) GCCGCCTGCTCTTCCTCGGCCCTCCGCCTCCTCCCCTCCTCCTTCTCGTCTTCAGCCGCTCCTCTCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCCGGAGAAGAGGCCCTTCGAGCGGCTGCCTGCCGATGTCTCCCCCATCAACTGCAGCCTTTGCCTCAAGCCCGACTTGCTGGACTTCACCTTCGAGGGCAAGCTGGAGGCCGCCGCCCAG___GTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAG___AAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAG|GACTGTTTCCTTGGGCCCTCGGTTTAATGCTGTCCACCACCCATGAGCAAAACTCTTTCTATGGCAAGAAACATCGAACACCTGTAGTGG___ACGGAGATCCTGGGGTCCTAAATTTGTGGCCGATTGCACTGTGTCCTGGAGACGGAGTGGAA...TGGAGTCTTCCTCCTCCTGCTTATTTTCTTTTTGG___AACAAGGCAAAGGCAATCTGCATGTAACATCACCAGAAGATGCAGAATGCCGCAGAACCAAGGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-603 chr10:24275685-24275781:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4869 NPEPPSP1::KIAA1217 ENSG00000291088.1::ENSG00000120549.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 825 TRUE 303 NPEPPSP1 ENSG00000291088.1 lncRNA - - chr17:38195703-38257381:- chr17:38219046:- chr17:36351759-36413388:- chr17:36375100:- KIAA1217 ENSG00000120549.19 protein_coding + + chr10:23694746-24547848:+ chr10:24007225:+ chr10:23983675-24836777:+ chr10:24296154:+ chr17:38218814,chr17:38218817 chr10:23779911,chr10:23779908 NA NA chr17:36374867,chr17:36374870 chr10:24068840,chr10:24068837 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation low none |Actin_interacting_protein_3(100%) |AIP3(100%) 0 0 0 107 28 ENST00000649858.3 ENST00000376462.5 upstream upstream mismatches(1) CTCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCCGGAGAAGAGGCCCTTCGAGCGGCTGCCTGCCGATGTCTCCCCCATCAACTGCAGCCTTTGC...TCACCTTGTCTTTCCCTAGTACTaTGaAAACAG|c|CGGAGATCCTGGGGTCCTAAATTTGTGGCCGATTGCcCTGTGTCCTGGAGACGGAGgGGAgCCACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-603 chr10:24275685-24275781:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4870 NPEPPSP1::KIAA1217 ENSG00000274487.5::ENSG00000120549.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 826 TRUE 304 NPEPPSP1 ENSG00000274487.5 transcribed_unprocessed_pseudogene - - chr17:38195872-38257152:- chr17:38219046:- chr17:36351928-36413159:- chr17:36375100:- KIAA1217 ENSG00000120549.19 protein_coding + + chr10:23694746-24547848:+ chr10:23877406:+ chr10:23983675-24836777:+ chr10:24166335:+ chr17:38218814,chr17:38218817 chr10:23779911,chr10:23779908 NA NA chr17:36374867,chr17:36374870 chr10:24068840,chr10:24068837 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none |Actin_interacting_protein_3(100%) |AIP3(100%) 6 7 12 107 61 ENST00000620148.2 ENST00000376462.5 upstream upstream duplicates(7),mismatches(5) CCTCCTTCTCGTCTTCAGCCGCTCCTCTCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCCGGAGAAGAGGCCCTTCGAGCGGCTGCCTGCCGATGTCTCCCCCATCAACTGCAGCCTTTGCCTCAAGCCCGACTTGCTGGACTTCACCTTCGAGGGCAAGCTGGAGGCCGCCGCCCAG___GTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAG___AAATACATGCTACAGGATTTAACTATCAGAATGAAGATGAAAAAGTCACCTTGTCTTTCCCTAGTACTCTGCAAACAG|GACTGTTTCCTTGGGCCCTCGGTTTAATGCTGTCCACCACCCATGAGCAAAACTCTTTCTATGGCAAGAAACATCGAACACCTGTAGTGG___ACGGAGATCCTGGGGTCCTAAATTTGTGGCCGATTGCACTGTGTCCTGGAGACGGAGTGGAA...TGGAGTCTTCCTCCTCCTGCTTATTTTCTTTTTGG___AACAAGGCAAAGGCAATCTGCATGTAACATCACCAGAAGATGCAGAATGCCGCAGAACCAAGGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-603 chr10:24275685-24275781:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4871 NPEPPSP1::KIAA1217 ENSG00000274487.5::ENSG00000120549.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 826 TRUE 304 NPEPPSP1 ENSG00000274487.5 transcribed_unprocessed_pseudogene - - chr17:38195872-38257152:- chr17:38219046:- chr17:36351928-36413159:- chr17:36375100:- KIAA1217 ENSG00000120549.19 protein_coding + + chr10:23694746-24547848:+ chr10:24007225:+ chr10:23983675-24836777:+ chr10:24296154:+ chr17:38218814,chr17:38218817 chr10:23779911,chr10:23779908 NA NA chr17:36374867,chr17:36374870 chr10:24068840,chr10:24068837 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation low none |Actin_interacting_protein_3(100%) |AIP3(100%) 0 0 0 107 28 ENST00000620148.2 ENST00000376462.5 upstream upstream mismatches(1) CTCGCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCCGGAGAAGAGGCCCTTCGAGCGGCTGCCTGCCGATGTCTCCCCCATCAACTGCAGCCTTTGC...TCACCTTGTCTTTCCCTAGTACTaTGaAAACAG|c|CGGAGATCCTGGGGTCCTAAATTTGTGGCCGATTGCcCTGTGTCCTGGAGACGGAGgGGAgCCACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-603 chr10:24275685-24275781:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4875 DNM1L::FGD4 ENSG00000087470.21::ENSG00000139132.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 443 FALSE NA FALSE NA DNM1L ENSG00000087470.21 protein_coding + + chr12:32679200-32745650:+ chr12:32679465:+ chr12:32832134-32898584:+ chr12:32832399:+ FGD4 ENSG00000139132.16 protein_coding + + chr12:32399558-32646050:+ chr12:32564137:+ chr12:32552492-32798984:+ chr12:32717071:+ chr12:32687049,chr12:32687047 chr12:32444479,chr12:32444474 NA NA chr12:32839983,chr12:32839981 chr12:32597413,chr12:32597408 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynamin_family(3%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(100%) Dynamin_N(0%),MMR_HSR1(0%)|FYVE(100%),IQ_SEC7_PH(100%),PH(100%),RhoGEF(100%) 1 7 9 318 215 ENST00000452533.6 ENST00000534526.7 downstream upstream duplicates(4),mismatches(1) GGAAGGAGGCGAACTGTGGGCCCCGGCCCCATTCATTGCCGTGGCCGGCGGGCACTGGGGCCCCGTGTTTTCAGAGTCATGGAGGCGCTAATTCCTGTCATAAACAAGCTCCAGGACGTCTTCAACACGGTGGGCGCCGACATCATCCAGCTGCCTCAAATCGTCGTAGTGGGAACGCAG|GCAGCAGTACCTGTCCAAAGATCGCTTTAGTTCCACCTTGCTCCACAAGCAGCACAACCACACTGGTTGGTGAGAATGTATCTGAAGAAGAGGCTCAGGGAATAAATGGGAACAGGCCAGCAAAACACTCAGCTGCAAGTCCAAAGCCACAAG___TGCCTCCAAAGCCATTACACCTGCAGAATTCACCTTCGTCCAATATACACCAAAC MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQ|aavpvqrsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4876 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 444 TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38419399:+ chr17:36575523-36668621:+ chr17:36575642:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24872063:- chr10:25137543-25241535:- chr10:25160992:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Phosphoribosyl_transferase_domain(57%) |Pribosyltran(22%) 0 12 4 25 105 ENST00000633445.2 ENST00000320152.11 downstream downstream duplicates(2),mismatches(2) GTGCAGCTGCCCGGACAGGGCGCATGGAGGGGCCGCCTCCCCCTGCGCCCCCCGGGGCCGGCGCGGCGAGGACGGCATAGCAGGGCCCAGCATGGAGCAG|AATGACCAGTCCATGGGTGAGATGCAGATAATCGGAGGCGATGATCTTTCAACGCTGGCTGGAAAG___AATGTTCTCATTGTTGAG___GATGTTGTCGGAACTGGGAGGACCATGAAAGCACTACTCAGCAATATAGAGAAATACAAGCCCAACATGATTAAGGTAGCCAG___TTTGTTGGTGAAGAGAACATCCAGAAGTGACGGCTTTAGACCTGACT___ATGCTGGATTTGAGATTCCAAACTTATTTGTG...ATATGCCTTAGATTACAATGAATACTTCAGAGATCTGAAT___CACATATGCGTCATCAATGAGCACGGTAAAGAAAAATATCGAGTCTAAAGACATGAATTCT MEQ|NDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4877 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 445 TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38428548:+ chr17:36575523-36668621:+ chr17:36584792:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24872063:- chr10:25137543-25241535:- chr10:25160992:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Phosphoribosyl_transferase_domain(57%) |Pribosyltran(22%) 0 9 4 23 105 ENST00000622683.5 ENST00000320152.11 downstream downstream duplicates(1),mismatches(7) CGCAGAGCCGCCGCTGCCACCCGATGAATGGAGTCGCCTTCTGCCTGGTCGGGATCCCGCCCCGCCCGGAGCCCCGGCCCCCACAG|AATGACCAGTCCATGGGTGAGATGCAGATAATCGGAGGCGATGATCTTTCAACGCTGGCTGGAAAG___AATGTTCTCATTGTTGAG___GATGTTGTCGGAACTGGGAGGACCATGAAAGCACTACTCAGCAATATAGAGAAATACAAGCCCAACATGATTAAGGTAGCCAG___TTTGTTGGTGAAGAGAACATCCAGAAGTGACGGCTTTAGACCTGACT___ATGCTGGATTTGAGATTCCAAACTTATTTGTGGTGGGATATGCCTTAGATTACAATGAATACTTCAGAGATCTGAAT___CACATATGCGTCATCAATGAGCACGGTAAAGAAAAATATCGAGTCTAAAGACATGAATTCTCACCACTAAAGTCCCAGATAGCATCATATTTACGCCTGTACTTGcGAAGaCAGCTGTCAAGTTTGTCCCCCCAGGCATCTTCACT MNGVAFCLVGIPPRPEPRPPQ|NDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4878 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38428548:+ chr17:36575523-36668621:+ chr17:36584792:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24908685:- chr10:25137543-25241535:- chr10:25197614:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Phosphoribosyl_transferase_domain(57%) |Pribosyltran(62%) 0 4 4 23 13 ENST00000622683.5 ENST00000376376.3 downstream downstream mismatches(1) AATGGAGTCGCCTTCTGCCTGGTCGGGATCCCGCCCCGCCCGGAGCCCCGGCCCCCACAG|CTGCGTGCTCGGTTGAAGAGGACAACCATCTGTGATAGAGGAGGACTGGCCTTCAGTCAAGGGTATATGAGTAGCTGTGCTCCCC...GAGAGGTTACCTCCAAGTGCTCATTCCCTGTTTCCACATCCGGTTTCAGTTACCAAGATCAGAGCAGAATTAGGTCTGAGATCCAGTGAGGTGTACAGTAGCACCTGGACCATTCTAGGGCTCACTGTCTTCAAGCCCTG NGVAFCLVGIPPRPEPRPPQ|LRARLKRTTICDRGGLAFSQGYMSSCAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4879 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38419399:+ chr17:36575523-36668621:+ chr17:36575642:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24908685:- chr10:25137543-25241535:- chr10:25197614:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Phosphoribosyl_transferase_domain(57%) |Pribosyltran(62%) 0 3 4 25 13 ENST00000633445.2 ENST00000376376.3 downstream downstream mismatches(1) CCGGGTGCAGCTGCCCGGACAGGGCGCATGGAGGGGCCGCCTCCCCCTGCGCCCCCCGGGGCCGGCGCGGCGAGGACGGCATAGCAGGGCCCAGCATGGAGCAG|CTGCGTGCTCGGTTGAAGAGGACAACCATCTGTGATAGAGGAGGACTGGCCTTCAGTCAAGGGTATATGAGTAGCTGTG...CACATCCGGTTTCAGTTACCAAGATCAGAGCAGAATTAGGTCTGAGATCCAGTGAGGTGTACAGTAGCACCTGGACCATTCTAGGGCTCACTGTCTTCAAG MEQ|LRARLKRTTICDRGGLAFSQGYMSSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4880 ZNF124::RABGAP1L ENSG00000196418.13::ENSG00000152061.24 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 828 TRUE 306 ZNF124 ENSG00000196418.13 protein_coding - + chr1:247121975-247172020:- chr1:247126594:+ chr1:247285277-247335322:- chr1:247289896:+ RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174811832:+ chr1:174128548-174964445:+ chr1:174780970:+ chr1:247146364 chr1:174793686 NA NA chr1:247309666 chr1:174762824 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |Rab-GTPase-TBC_domain(3%) |RabGAP-TBC(0%) 2 5 9 17 103 unknown ENST00000681986.1 downstream upstream duplicates(4),mismatches(3),multimappers(3) CCGGCCTTTGTCTCTCGTGCCCGCACGTGCGTGTCTCGGTCAGTAGCCCTGCGCTTCTCCTTCACTCTCGGCGGTTCAGGAGGCTCTGCCGCAGCCGGGGCCCTCCTGTGACCTGCATGTACTGGGGGATTCGCAGGGAGGATGTCGGGACACCCCGGAAGCTGGGAAATG|ACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAA___GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAG___AGGGAGAACCGAAGATTACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4881 ZNF124::RABGAP1L ENSG00000196418.13::ENSG00000152061.24 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 446 TRUE 828 TRUE 306 ZNF124 ENSG00000196418.13 protein_coding - - chr1:247121975-247172020:- chr1:247159006:- chr1:247285277-247335322:- chr1:247322308:- RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174811832:+ chr1:174128548-174964445:+ chr1:174780970:+ chr1:247146327,chr1:247146327,chr1:247146329 chr1:174793693,chr1:174793688,chr1:174793686 NA NA chr1:247309629,chr1:247309629,chr1:247309631 chr1:174762831,chr1:174762826,chr1:174762824 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none KRAB_box(100%)|Rab-GTPase-TBC_domain(3%) KRAB(100%)|RabGAP-TBC(0%) 2 2 6 144 103 ENST00000472531.5 ENST00000681986.1 upstream upstream duplicates(4),mismatches(2),multimappers(9) GGCTTTGTTGGATCCTTCCCAGAAGAATCTCTATAGAGACGTGATGCAGGAAACCTTCAGGAATCTGGCTTCCATAG___GAAACAAAGGGGAAGACCAGAGCATTGAAGATCAGTACAAAAATTCTTCAAGAAATCTAAG|ACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAA___GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAAC ALLDPSQKNLYRDVMQETFRNLASIGNKGEDQSIEDQYKNSSRNLr|pqrktfcrlilkvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4882 ZNF124::RABGAP1L ENSG00000196418.13::ENSG00000152061.24 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 828 TRUE 306 ZNF124 ENSG00000196418.13 protein_coding - - chr1:247121975-247172020:- chr1:247171848:- chr1:247285277-247335322:- chr1:247335150:- RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174811832:+ chr1:174128548-174964445:+ chr1:174780970:+ chr1:247146327,chr1:247146327,chr1:247146329 chr1:174793693,chr1:174793688,chr1:174793686 NA NA chr1:247309629,chr1:247309629,chr1:247309631 chr1:174762831,chr1:174762826,chr1:174762824 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Rab-GTPase-TBC_domain(3%) |RabGAP-TBC(0%) 1 2 0 100 103 ENST00000543802.3 ENST00000681986.1 upstream upstream duplicates(4),mismatches(3),multimappers(9) CGGCCTTTGTCTCTCGTGCCCGCACGTGCGTGTCTCGGTCAGTAGCCCTGCGCTTCTCCTTCACTCTCGGCGGTTCAGGAGGCTCTGCCGCAGCCGGGGCCCTCCTGTGACCTGCATGTACTGGGGGATTCGCAGGGAGGATGTCGGGACACCCCGGAAGCTGGGAAATG|ACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAA___GTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAG___AGGGA MSGHPGSWEM|TSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQEDPMDRYKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4884 C2orf92::MGAT4A ENSG00000228486.11::ENSG00000071073.13 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C2orf92 ENSG00000228486.11 protein_coding + + chr2:97664217-97703066:+ chr2:97675928:+ chr2:98280680-98319529:+ chr2:98292391:+ MGAT4A ENSG00000071073.13 protein_coding - - chr2:98619106-98731132:- chr2:98644053:- chr2:99235569-99347595:- chr2:99260516:- chr2:97685668,chr2:97685667 chr2:98645451,chr2:98645450 NA NA chr2:98302131,chr2:98302130 chr2:99261914,chr2:99261913 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none |N-Acetylglucosaminyltransferase-IV_(GnT-IV)_conserved_region(29%) |Glyco_transf_54(11%) 5 0 6 65 109 ENST00000615201.4 ENST00000393487.6 downstream downstream duplicates(2) GCACCTGGCTGCAATTTCCTGAAAACCTGACGTATAGTGGCTTAAACAAAGAGTGGTTTATTTTCCTTCTGTCATAGCAATCTGGGGGAGGCCACTGTGGC...TTGAGTTTGTGTCATGCATTCATTGTATTCATAGTCTGCTTTAGGTACTTAGCAAAATATTGCTGATATTAACATGCCTTTGTTTGCTTCACTGGAGATGAAATTGTGCTCCAAGTGTTTTCCAAGGTTCCGTATGACCCATCATTTGATGAAACAAGAACAGCAGTCAGATCCATTACAAAGAGAGACACACAAAAA[a]A___...TTGGAACTTCAGATGCTTGCAGACACTTCATGAATGCTCTGTGACACTCAGAATAG___GCTATTCCCAACAGAAGAGCTTGAACAATGCTGCATTTGCATCAGGTTCAAATGAGCGAGAGGAACATTTGGCTAAAATATTTG|GTAAAATGTTTCAAGCGCCGGATCTTACTCTGATTGTAGAATTCATATTCATGTTTTACAAGGAGAAACCCATTGATTGGCTCCTGGACCATATTCTCTGGGTGAAAGTCTGCAACCCTGAAAAAGATGCA___AAACATTGTGATAGACAGAAAGCAAATCTGCGAATTCGCTTCAGACCTTCCCTTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4885 PVT1::LINC02532 ENSG00000249859.14::ENSG00000235142.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC02532 ENSG00000235142.12 lncRNA - + chr6:106705328-106788148:- chr6:106757289:+ chr6:107153203-107236023:- chr6:107205164:+ chr8:127877267 chr6:106755161 NA NA chr8:128889513 chr6:107203036 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 2 1 8 129 68 ENST00000656491.1 unknown downstream upstream duplicates(3),mismappers(1),mismatches(2) CGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GCAACACAACTGTGATCAACTATAAATTGCTGGATGGTGAGTTCTTTATTCTGTCCACAGCAAGGTAAATGACTTCCTTGCCTAACCAACTTCTCAGGCAATAATAATCTGAACTCCTCTCACTCTCCGTCCTTCTCAGAGGAAGCCAACACAAGTCATACAAGTCATGCTGCTGATCCACGTGAATGTAATTTGAGCAGTTTCAAAATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4897 SOBP::ENSG00000286084 ENSG00000112320.12::ENSG00000286084.3 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 830 FALSE NA SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105587359:+ chr6:105851082-106036948:+ chr6:106035234:+ chr6:107515720 chr6:105522023 NA NA chr6:107836924 chr6:105969898 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 2 6248 11 ENST00000317357.10 ENST00000701429.1 downstream upstream duplicates(1) ATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGCAGCACATTTCTGTTCTCAAAG___AAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTTCACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGGGTCAAAGGATCATGGCAGTGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCAG|GCAAGGAATCAAGGCTTCTAGACACCACCGGATGAGTCAAGGTACCGTGGCCCAGACAAACTAAGCACTGGTTCTGTCACCACATAGACACAAAGGCATTCAAGAA IEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPA|gkesrlldttg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4900 PDSS2::QRSL1 ENSG00000164494.12::ENSG00000130348.11 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 449 FALSE NA FALSE NA PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- QRSL1 ENSG00000130348.11 protein_coding + + chr6:106629578-106668417:+ chr6:106640349:+ chr6:107077453-107116292:+ chr6:107088224:+ chr6:107213434,chr6:107213443,chr6:107213434 chr6:106630237,chr6:106630237,chr6:106630266 NA NA chr6:107534638,chr6:107534647,chr6:107534638 chr6:107078112,chr6:107078112,chr6:107078141 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Amidase(100%) |Amidase(100%) 1 0 7 605 1193 ENST00000369037.9 ENST00000369046.8 upstream upstream duplicates(1),mismatches(1) CTCGACACCATCTCCTCGGTGGGCTCTTGGCGTGGTCGGTCCTCCAAGTCCCCGGCCCACTGGAATCAGGTAGTGTCAGAGGCGGAGAAGATCGTGGGGTACCCCACGTCCTTCATGAGCCTTCGCTGCCTGCTGAGCGACGAGCTCAGCAACATCGCTATGCAGGTGCGGAAGCTGGTGGGCACTCAGCACCCTCTGCTTACCACAGCCAG|GTTTCTGCGGCACTGAAACAAGGCCAAATTACACCAACAGAGCTCTGTCAAAAATGTCTCTCTCTTATCAAGAAGACCAAGTTTCTAAATGCCTACATTACTGTGTCAGAAGAGGTGGCCTTAAAACAAGCTGAAGAATCAGAAAAGAGATATAAGAATG___GACAGTCACTTGGGGATTTAGATGGAATTCCTATTGCAGTAAAAGACAATTTaAG LDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTAr|flrh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4901 RTN4IP1::CRYBG1 ENSG00000130347.13::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RTN4IP1 ENSG00000130347.13 protein_coding - - chr6:106570771-106629498:- chr6:106622818:- chr6:107018646-107077373:- chr6:107070693:- CRYBG1 ENSG00000112297.18 protein_coding + - chr6:106360717-106572017:+ chr6:106465387:- chr6:106808592-107019892:+ chr6:106913262:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Alcohol_dehydrogenase_GroES-like_domain(96%)| ADH_N(81%)| 2 4 2 940 21 ENST00000369063.8 unknown upstream downstream duplicates(1),mismatches(1) AAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGAACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATAGACGTTAATATGAGAA___GTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTT...GTGAAAATCAAAGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAATACTTCAAGCCTGGAGATGAG|ATACAAAAGCTGATGCCCAGAAAGGATGAATGACTTAACCTAAGACATCACAGGCCGTCTGGAGAAGAGCTGAAATCGCAACTCTGGTCTTTTGGCCATATTCAGTGCTTTATACTTCAGTTTTACAGTCTTCTATATGCCAGGCAtTGgAATAGGTGTCAATAAGATGcTAGTTCCCCGCCCTGGAGAGGCAAAAGGTCACGTGGAGAAGAGATGTAATTTCCGAATAATAATATGGATAAATTATTTGAGATATTACAAAATTCCATGAGAACATGGGAG VKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDE|iqklmprkde* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4903 SOBP::PRDM1 ENSG00000112320.12::ENSG00000057657.17 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 450 FALSE NA FALSE NA SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PRDM1 ENSG00000057657.17 protein_coding + + chr6:105993463-106109939:+ chr6:106088201:+ chr6:106441338-106557814:+ chr6:106536076:+ chr6:107509221,chr6:107509081 chr6:106035453,chr6:106035556 NA NA chr6:107830425,chr6:107830285 chr6:106483328,chr6:106483431 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%) |SET(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 3 1 2 6248 106 ENST00000317357.10 ENST00000369096.9 downstream upstream none ATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGCAGCACATTTCTGTTCTCAAAG___AAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTTCACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGGGTCAAAGGATCATGGCAGTGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCAG|GCTGCCCCCAAGTGTAACTCCAGCACTGTGAGGTTTCAGGGATTGGCAGAGGGGACCAAGGGGACCATGAAAATGGACATGGAG...TGAAGAGAAGTGTACATACATTGTGAACGACCACCCCTGGGATTCTGGTGCTGATGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAG___GTTATTGGAGTGATGAGTAAAGAATACATACCAAAGGGCACACGTTTTGG FRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPA|gcpqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PR domain containing 1, with ZNF domain 1 Yes DLBCL leukaemia_lymphoma TSG large_deletion, nonsense, missense, frameshift, splice_site 4906 PREP::ENSG00000284999 ENSG00000085377.15::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PREP ENSG00000085377.15 protein_coding - - chr6:105273218-105454062:- chr6:105402847:- chr6:105721093-105901937:- chr6:105850722:- ENSG00000284999 ENSG00000284999.1 lncRNA - + chr6:105679378-105893041:- chr6:105885745:+ chr6:106127253-106340916:- chr6:106333620:+ chr6:105399989,chr6:105399991 chr6:105875425,chr6:105875423 NA NA chr6:105847864,chr6:105847866 chr6:106323300,chr6:106323298 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Prolyl_oligopeptidase__N-terminal_beta-propeller_domain(2%)| Peptidase_S9_N(0%)| 1 2 2 1204 36 ENST00000652536.2 unknown upstream upstream duplicates(1),low_entropy(1) CAGCCGCGCCTCGCGGCCAGCCCGGCTAGCTCAGGTCCGCTCCCGGAGCCCGCGCCCCTCCACGCTGCCCCCTGCCTGTCCCCGGCCATGCTGTCCCTTCAGTACCCCGACGTGTACCGCGACGAGACCGCC|GTTGCAGCTGATTTGTGGTGGGGCCTGGATTTAAACACCTACATGTCTGAGACTAAATCCTGGGCTTGTTCCCACACACAGCACCGGTGAGCATGAAACAGACACCACAGAACAATGCAGAATCAGCCCTACAAGTCTGcTGTGTGTGAAACCA MLSLQYPDVYRDETA|vaadlwwgldlntymsetkswacshtqhr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4908 ENSG00000288000::DPP6 ENSG00000288000.1::ENSG00000130226.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288000 ENSG00000288000.1 protein_coding + + chr20:43458054-43541881:+ chr20:43460598:+ chr20:42086694-42170521:+ chr20:42089238:+ DPP6 ENSG00000130226.18 protein_coding + + chr7:153748133-154894285:+ chr7:154294614:+ chr7:153445218-154685995:+ chr7:153991699:+ chr20:43466366,chr20:43466444,chr20:43466439 chr7:154290392,chr7:154290392,chr7:154290384 NA NA chr20:42095006,chr20:42095084,chr20:42095079 chr7:153987477,chr7:153987477,chr7:153987469 NA NA sense sense unknown CDS/splice-site intron translocation medium none |Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region(100%),Prolyl_oligopeptidase_family(100%) RRM_1(100%),RRM_5(100%)|DPPIV_N(100%),PD40(100%),Peptidase_S9(100%) 2 0 1 2100 0 ENST00000657241.1 unknown downstream upstream none GGAGAACATCTGGCAGAGACAAATACGGACCACCTGTTCGTACAGAATACAGGCTTATTGTAGAAAATCTTTCTAGTCGGTGCAGTTGGCAAGATTTAAAG...AATGAGGGTGTAATTGAGTTTCGCTCCTACTCTGACATGAAGCGTGCTTTGGACAAACTGGATGGCACAGAAATAAATGGCAGAAATATTAGGCTTATTGA...GTCACGAAGTAGGAGTCGCAGGAGCAGCCGCAGTAGATCTCGAAGTATCTCAAAAAGTCGCTCCCG|GCATGAAAATCTTTCCTGACTCCAATCCTGTTGCTAAACAGCGAGGTCTAGCCCAGAAGGCATGGAGGGGAcCAGAGTTTCTGGGAAACAAGAAGAGGACTTGGAGCCCCAGACAGGGGACAACTCCAGAGGGTTTCTTGGGGATcCCTTTCCCTACAGGCCACTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4912 LIMCH1::NSUN7 ENSG00000064042.18::ENSG00000179299.17 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LIMCH1 ENSG00000064042.18 protein_coding + + chr4:41359607-41700044:+ chr4:41524478:+ chr4:41361624-41702061:+ chr4:41526495:+ NSUN7 ENSG00000179299.17 protein_coding + + chr4:40749925-40811184:+ chr4:40798787:+ chr4:40751942-40813201:+ chr4:40800804:+ chr4:41532105,chr4:41532099 chr4:40783575,chr4:40783566 NA NA chr4:41534122,chr4:41534116 chr4:40785592,chr4:40785583 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Calponin_homology_(CH)_domain(61%)|16S_rRNA_methyltransferase_RsmB/F(19%) CH(68%)|Methyltr_RsmB-F(0%) 0 0 2 200 13 ENST00000313860.12 ENST00000381782.7 downstream upstream duplicates(4),mismappers(1) CGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGA___GTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTG|TTACTAAAGCTCAAGCAGTTGTTTACTGCACATGTTCAGTTTTTCCAGAAGAAAATGAAGCTGTTGTTAAGAAAGCACTGGAATTTCAAGACCTTGGGAATAAAGGACAACCTTAC...TCCAGGCTGGAGTGCAGTGGCACCATTTCGATTCACTACAAACTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTGGCTGGGATTAC RTGLENGILLCELLNAIKPGLVKKINRLPTPIAGL|llklkqlftahvqffqkkmklllrkhwnfktlgikdnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4913 ZNF552::ZNF587B ENSG00000178935.5::ENSG00000269343.9 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF552 ENSG00000178935.5 protein_coding - - chr19:57803841-57814913:- chr19:57813294:- chr19:58315209-58326281:- chr19:58324662:- ZNF587B ENSG00000269343.9 protein_coding + - chr19:57819721-57846238:+ chr19:57820930:- chr19:58331089-58357606:+ chr19:58332298:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none KRAB_box(98%)| KRAB(4%)| 0 0 2 162 30 ENST00000391701.1 unknown upstream downstream duplicates(2),mismappers(2) CTTTAACGGCGCCCGCTGCTCTCAACCCAGCTTACCCCACGTGGTCCCATGGCGGCGGCCGCGCTAAGGTTCCCCGTTCAG___GGCACAGTGACTTTTGAAGACGTGGCTGTGAAATTTACCCAGGAGGAATGGAATCTCCTTAGTGAGGCTCAGAGATGCCTGTACCGTGATGTGACGCTGGAGAACCTGGCACTTATGTCCTCCCTGG|GTGCCTGTGGACCCCAGGTTCCATCCTCCCAGCTGCCTCCATCTCCAGACCATCGCCTA...CTCCCCACCGCATCGCACTGATGTCAAACACAGGTGAAACCGTCTTTGCAAAATTATAACTGAGGAAATTATGACAGT????G...AACCTTTAAGCTGTCCTTGTTCATTCCTGGGCACAGGCTGAATTAACTTAGGGAAGGAATTCAGTTCATGGTTTCACTCTGAAACAAAATTGATAACAGC...GGACTAACAGTTTAGCTATAAGATTAGAAATTACCGTTTAGGGGTCATGTAGCTTCTGGCTCCAAGAGTCTGAACCTCGCCAAGTTGCTCCTGAAGATAAC MAAAALRFPVQGTVTFEDVAVKFTQEEWNLLSEAQRCLYRDVTLENLALMSSL|gacgpqvpssqlppspdhr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4914 CA12::VPS13C ENSG00000074410.14::ENSG00000129003.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CA12 ENSG00000074410.14 protein_coding - - chr15:63321378-63381846:- chr15:63375658:- chr15:63613577-63674045:- chr15:63667857:- VPS13C ENSG00000129003.19 protein_coding - - chr15:61852389-62060473:- chr15:61940794:- chr15:62144588-62352672:- chr15:62232993:- chr15:63375291,chr15:63375296 chr15:61942041,chr15:61942043 NA NA chr15:63667490,chr15:63667495 chr15:62234240,chr15:62234242 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Eukaryotic-type_carbonic_anhydrase(2%)|Autophagy-related_protein_C_terminal_domain(100%),Repeating_coiled_region_of_VPS13(10%),SHR-binding_domain_of_vacuolar-sorting_associated_protein_13(100%),Vacuolar-sorting-associated_13_protein_C-terminal(100%) Carb_anhydrase(0%)|ATG_C(100%),SHR-BD(100%),VPS13_C(100%),VPS13_mid_rpt(18%) 0 1 1 5 82 ENST00000178638.8 ENST00000249837.7 upstream downstream mismatches(2) CCGGCGCAGCCTGCACGCGGCGGCCGTGCTCCTGCTGGTGATCTTAAAGGAACAGCCTTCCAGCCCGGCCCCAGTGAACG___GTTCCAAGTGGACTTATTTTG|AACTATTTTGCAGGCTAGCTTGCCACAAAATGACATTGAAATTTTAAAACCAGTCAACATGCTTTTGTCCA...TGGAGATAAAAGGAAAACTAAAACCTATGCAG___GTTGCTCTCAGTGAAGATGACTTGACAGTTTTAATGAAAATTTTGCTAGAAAATCTTGGAGAAGCTTCC...AGCCCTACACAGTCTGTGCAGGAGACTGTAAGAGTGAGAAAAGTTGATGTTTCAAGTGTACCTGACCATCTCAAAG___AACAAGAAGATTGGACAGACTCAAA...CTCTCTATGAACCAGATTGTCAGTCTCCAATTTGACTTTCACTTTGAATCTCTTTCCATTATCCTTTATAACAATGATATCAACCAG___GAATCTGGAGTTGC RRSLHAAAVLLLVILKEQPSSPAPVNGSKWTYF|elfcrlachkmtlkf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4958 IL1RAPL1::RADX ENSG00000169306.11::ENSG00000147231.14 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 453 FALSE NA FALSE NA IL1RAPL1 ENSG00000169306.11 protein_coding + + chrX:28587446-29956718:+ chrX:29668504:+ chrX:28605563-29974835:+ chrX:29686621:+ RADX ENSG00000147231.14 protein_coding + + chrX:106611930-106679439:+ chrX:106637760:+ chrX:105855160-105922669:+ chrX:105880990:+ chrX:29792193,chrX:29792190 chrX:106636943,chrX:106636937 NA NA chrX:29810310,chrX:29810307 chrX:105880173,chrX:105880167 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Immunoglobulin_domain(39%)|Family_of_unknown_function_(DUF5521)(44%) I-set(0%),Ig_3(0%),Ig_6(100%),ig(0%)|DUF5521(61%) 60 18 14 338 137 ENST00000378993.6 ENST00000461251.5 downstream upstream duplicates(11) GATTTGGATGGGGATGCAGAGCCAAACCATATCACCTTGTCAG___CCCCTCTGACTGATAAGCCACCCAAGCTTTTGTATCCTATGGAAAGTAAACTGACAATTCAGGAGACCCAGCTGG|GTCATAGAGGCCAGCCGTATACGTATGATGCCAAGGTAAAAAACTTTATTCAATGGATTAGAACAAAGTCTGATTCCGGGGAACAGAAaAATATGGTTATTGGTGGATATTACCCCTATCCACCAGTGCCAGAGACATTTTCCAAGTATAGTAGTTCTATTAAAGGTACTAATGTAA dldgdaepnhitlsAPLTDKPPKLLYPMESKLTIQETQL|gHRGQPYTYDAKVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKGTNV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4666b chrX:29574278-29574358:+ TRUE hsa-mir-548an chrX:106639814-106639896:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4959 PPWD1::NLN ENSG00000113593.12::ENSG00000123213.23 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 454 TRUE 839 TRUE 307 PPWD1 ENSG00000113593.12 protein_coding + + chr5:65563236-65587549:+ chr5:65579613:+ chr5:64859063-64883376:+ chr5:64875440:+ NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65809515:+ chr5:65018032-65167553:+ chr5:65105342:+ chr5:65581925,chr5:65581940,chr5:65581944,chr5:65581957,chr5:65581961,chr5:65581964,chr5:65581970 chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052 NA NA chr5:64877752,chr5:64877767,chr5:64877771,chr5:64877784,chr5:64877788,chr5:64877791,chr5:64877797 chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none WD_domain__G-beta_repeat(100%)|Peptidase_family_M3(42%) WD40(100%)|Peptidase_M3(64%) 38 15 22 233 259 ENST00000535264.5 ENST00000380985.10 downstream upstream duplicates(7) CGTGCTGTATGGAACAATGCTGGGCATTAAAGTTATAAATGTAGAGACAAACCG___GTGTGTGCGGATTTTAGGCAAACAAGAAAATATTAGAGTGATGCAATTGGCTTTGTTCCAGGGGATAGCCAAAAAGCATCGTGCTGCAACTACTATAGAAATGAAAGCTTCTGAAAATCCTGTTCTTCAGAATATTCAAGCTGACCCAACAATAGTCTGTACATCATTCAAAAAGAATAGATTTTATATG|ACTGATTTTGCACGATTTAGCGGAACAAATGTGGAAACTGACTTTGTAGAGGTGCCATCGCAAATGCTTGAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTCAAAACATTATAAAGATGGAAGCCCTATTGCAGACGATCTGCTTGAAAAACTTGTTGCTTCTAGGCTGGTCAACACAG___GTCTTCTGACCCTGCGC VLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTIVCTSFKKNRFYM|TDFARFSGTNVETDFVEVPSQMLENWVWDVDSLRRLSKHYKDGSPIADDLLEKLVASRLVNTGLLTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 65579613 TRUE 65780179 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4960 PPWD1::NLN ENSG00000113593.12::ENSG00000123213.23 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 839 TRUE 307 PPWD1 ENSG00000113593.12 protein_coding + + chr5:65563236-65587549:+ chr5:65572286:+ chr5:64859063-64883376:+ chr5:64868113:+ NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65809515:+ chr5:65018032-65167553:+ chr5:65105342:+ chr5:65581925,chr5:65581940,chr5:65581944,chr5:65581957,chr5:65581961,chr5:65581964,chr5:65581970 chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052 NA NA chr5:64877752,chr5:64877767,chr5:64877771,chr5:64877784,chr5:64877788,chr5:64877791,chr5:64877797 chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none WD_domain__G-beta_repeat(100%)|Peptidase_family_M3(42%) WD40(100%)|Peptidase_M3(64%) 1 0 0 218 259 ENST00000535264.5 ENST00000380985.10 downstream upstream none CAAGTGTAAGGCTTATCCAACCAGCGTATGTTTTTCACCAGATGGGAAGAAAATAGCTACTATTGGTTCTGATAGAAAAGTTAGAATTTTCAGATTTGTAACTGGAAAACTCATGAGAGTCTTTGATGAATCACTAAGC|ACTGATTTTGCA KCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLS|TDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 65579613 FALSE 65780179 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4961 TBL1X::PUDP ENSG00000101849.18::ENSG00000130021.15 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9501849:+ chrX:9431360-9709077:+ chrX:9469889:+ PUDP ENSG00000130021.15 protein_coding - + chrX:6667865-7148158:- chrX:6848479:+ chrX:6585906-7066199:- chrX:6766520:+ chrX:9568428 chrX:6833439 NA NA chrX:9536468 chrX:6751480 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 18 23 12 102 74 ENST00000407597.7 unknown downstream upstream duplicates(8),mismatches(2) AGGAGCAACGAAGGGCAGGCTCAAGGGAAGGCCCCACCATGTCCTTCTGGGGGGCCTTGAATGGCAACTGATACATAATAAGACACAATCTATTCTGCTGATTCACAATTATGGAGACTGT___...GCGCGGCCGGGCGCGCGGCGCCGCCACAAGTTGCGCTGCTCGCGACGAG___ATTTCCGTGAGGGTGGAAGAAAATCATACCATATCAGATGCCTCGCAGAGCACCAGGCCCACCGTGAAAG|ACATTACAGATGGAGAGAATGTGAACACTGAAGCTGTGACTGTGGCAACACCAGAATGTAACAGATGCTGCAAACAAAAATGAG___CTGAGGAATTCATGCAGAAGAAAGTAACAACCTGTACAGATGCATTTGACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4962 DOCK4::IMMP2L ENSG00000128512.24::ENSG00000184903.10 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 455 FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111822362:- chr7:111366166-111846462:- chr7:111462418:- IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:110963565:- chr7:110302700-111202573:- chr7:110603621:- chr7:111820840,chr7:111820847 chr7:111083851,chr7:111083855 NA NA chr7:111460896,chr7:111460903 chr7:110723907,chr7:110723911 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none C2_domain_in_Dock180_and_Zizimin_proteins(100%),DOCK_N-terminus(100%),Variant_SH3_domain(100%)|Signal_peptidase__peptidase_S26_(51%) DOCK-C2(100%),DOCK_N(100%),SH3_2(100%)|Peptidase_S26(12%) 7 33 12 74 462 ENST00000437633.6 ENST00000405709.7 upstream downstream duplicates(6) TCCTGTCCCTATTACGACAAATGACAGATAGACATTATCAACAGCTTCTTGATAGTTTTAATACAAAGGAAGAACTAAGG___GATTTCCTGCTGCAGATATTTACTGTGTTCCGAATATTGATACGCCCGGAGATGTTTCCAAAGGACTGGACTGTTATGCGCTTGGTTGCTAACAA|GTCTCCTAAAAACCCAGAACAGAAGATCATTAAGAGAGTGATTGCTCTTGAAGGAGATATTGTCAG___AACCATAGGACACAAAAACCGGTATGTCAAAGTCCCCCGTGGTCACATCTGGGTTGAAGGTGATCATCATGGACACAGTTTTGACAGTAATTCTTTTGGGCCG___GTTTCCCTAGGACTTCTGCATGCCCATGCCACACATATCCTGTGGCCCCCAGAGCGCTGG LSLLRQMTDRHYQQLLDSFNTKEELRDFLLQIFTVFRILIRPEMFPKDWTVMRLVANk|SPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Prostate adenocarcinoma KIDNEY,LUNG,PROSTATE no_match 111846157,111846157,111846157 FALSE,FALSE,FALSE 110603621,110303777,111127397 TRUE,FALSE,FALSE PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4963 ARHGAP42::DLG2 ENSG00000165895.19::ENSG00000150672.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 456 TRUE 840 TRUE 308 ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83980642:- chr11:83166055-85339379:- chr11:83691685:- chr11:100713907,chr11:100713904 chr11:84003385,chr11:84003388 NA NA chr11:100584638,chr11:100584635 chr11:83714428,chr11:83714431 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none BAR_domain_of_APPL_family(19%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(61%),SH3_domain(100%) BAR_3(0%)|Guanylate_kin(100%),PDZ(23%),PDZ_6(39%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 9 15 14 358 42 ENST00000298815.13 ENST00000706233.1 downstream downstream duplicates(3) CCCGCCCTGACCTCCGGCCCGGACGTGTCCGCGGCCGCCGCTGGCAGCGCCTGTGCCATGGGGCTGCCCACTCTGGAGTTCAGCGATTCCTACTTGGACAGCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|GTTTAGGCTTCAGTATTGCAGGAGGTGTGGGGAACCAACACATTCCTGGAGACAACAGCATTTATGTAACTAAAATTATAGATGGAGGAGCTGCACAAAAAGATGGAAGGTTGCAAGTAGGAGATAGACTACTAATG___GTAAACAACTACAGTTTAGAAGAAGTAACACACGAAGAGGCAGTAGCAATATTAAAGAACACATCAGAGGTAGTTTATTTAAAAGTTGGCAAACCCACTACCATTTA MGLPTLEFSDSYLDSPDFRERLQCHEIELERTNKFIKELIKDGSLLIGALR|sLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4964 ARHGAP42::DLG2 ENSG00000165895.19::ENSG00000150672.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 840 TRUE 308 ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83965468:- chr11:83166055-85339379:- chr11:83676511:- chr11:100713907,chr11:100713904 chr11:84003385,chr11:84003388 NA NA chr11:100584638,chr11:100584635 chr11:83714428,chr11:83714431 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none BAR_domain_of_APPL_family(19%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(42%),SH3_domain(100%) BAR_3(0%)|Guanylate_kin(100%),PDZ(18%),PDZ_6(29%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 0 1 2 358 89 ENST00000298815.13 ENST00000706233.1 downstream downstream none GGGAGCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|GTAAACAACTACAGTTTAGAAGAAGTAACACACGAAGAGGCAGTAGCAATATTAAAGAACACATCAGAGGTA...AAGTTGGCAAACCCACTACCATTTATATGACTGATCCTTATGGTCCACCTGATATTACTCACT___CTTATTCTCCACCAATGGAAAACCATCTACTCTCTGGCAACAATGGCACTTTAGAATATAAAACCTCCCTGCCACCCATCTCTCCAG...CCTGTTTACAGCACTGTGAACAAACTATGTGATAAGCCTGCTTCTCCCAGGCACTATTCCCCTGTTGAGTGTGACAAAAGCTTCCTCCTCTCAGCTCCCTA ERLQCHEIELERTNKFIKELIKDGSLLIGALR|skqlqfrrsntrrgssnikehirg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4965 INPP1::C2orf88 ENSG00000151689.13::ENSG00000187699.10 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA INPP1 ENSG00000151689.13 protein_coding + + chr2:190343570-190371665:+ chr2:190362687:+ chr2:191208296-191236391:+ chr2:191227413:+ C2orf88 ENSG00000187699.10 protein_coding + - chr2:189879609-190203484:+ chr2:189893752:- chr2:190744335-191068210:+ chr2:190758478:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Inositol_monophosphatase_family(3%)| Inositol_P(0%)| 9 2 20 203 8 ENST00000322522.8 unknown downstream downstream duplicates(3) ACAAGAAGTTTGCAGTTGACTTCAAGACtCTGGCTGATGTACTGGTACAGGAAGTTATAAAACAGAATATGGAGAACAAG___TTTCCAGGCTTGGAAAAAAATATTTTTGGAGAAGAATCCAATGAGTTTACTAATGACTGGG|TCAGTTGAACTTACGAATGCAGAACCCATGGTTAGAGAGGGCCAGCTGTACAGATAAAAGCAAGCACAAAGGTGGCTGGCACGATGGCCGAACAGGAACAGCTCTGGTCTGCAGCTCCCAGTGAGATCAACACAGAAG___GAATCTAGCGCTTCAGGATTATGTGCACTCTTGCTAATCCAAGTGTTATCCCTGA KKFAVDFKTLADVLVQEVIKQNMENKFPGLEKNIFGEESNEFTNDW|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4966 BMPR2::PAFAH1B2P2 ENSG00000204217.16::ENSG00000257501.8 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BMPR2 ENSG00000204217.16 protein_coding + + chr2:202376327-202567751:+ chr2:202377550:+ chr2:203241050-203432474:+ chr2:203242273:+ PAFAH1B2P2 ENSG00000257501.8 transcribed_processed_pseudogene - + chr12:97644345-97761859:- chr12:97751827:+ chr12:98038123-98155637:- chr12:98145605:+ chr2:202404232,chr2:202404233 chr12:97747920,chr12:97747912 NA NA chr2:203268955,chr2:203268956 chr12:98141698,chr12:98141690 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 10 8 10 238 27 ENST00000374580.10 unknown downstream upstream duplicates(3),mismatches(3) GCTCTGCAGCTAGGTCCTCTCATCAGCCATTTGTCCTTTCAAACTGTATTGTGATACGGGCAGGATCAGTCCACGGGAGAGAAGACGAGCCTCCCGGCTGTTTCTCCGCCGGTCTACTTCCCATATTTCTTTTCTTTGCCCTCCTGATTCTTGGCTGGCCCAGGGATGACTTCCTCGCTGCAGCGGCCCTGGCGGGTGCCCTGGCTACCATGGACCATCCTGCTGGTCAGCACTGCGGCTG|TTTTGAAGTTTTGTGACTGGGACTGGCTTTCCTGTTCTTCAGCTTGCAGAAGGCCTGTTGTGAGACTTCGCCTTGTGATCGT___GTGGGAGCCGAACTGTCTTGGGAAAAG___AATTAAAAATAGAAGCTGTTGGGATGCGGATTTCAAAATAAAAAAGCAAAGATGATTTCTG MTSSLQRPWRVPWLPWTILLVSTAA|vlkfcdwdwlscssacrrpvvrlrlvivwepnclgkriknrscwdadfkikkqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bone morphogenetic protein receptor type-2 TKL STKR STKR2 Q13873 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4967 ERAP1::LIX1-AS1 ENSG00000164307.13::ENSG00000251513.2 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERAP1 ENSG00000164307.13 protein_coding - - chr5:96760810-96808100:- chr5:96790296:- chr5:96096514-96143803:- chr5:96125999:- LIX1-AS1 ENSG00000251513.2 lncRNA + - chr5:97089075-97437217:+ chr5:97241514:- chr5:96424779-96772921:+ chr5:96577218:- chr5:96789489,chr5:96789493 chr5:97247854,chr5:97247855 NA NA chr5:96125192,chr5:96125196 chr5:96583558,chr5:96583559 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Peptidase_M1_N-terminal_domain(100%),Peptidase_family_M1_domain(93%)| Peptidase_M1(74%),Peptidase_M1_N(100%)| 11 5 8 346 23 ENST00000296754.7 unknown upstream downstream duplicates(1) GATAAG___GGAGCTTGTATTCTGAATATGCTAAGGGAGTATCTTAGcGCTGACGCATTTAAAAGTGGTATTGTACAGTATCTCCAGAAGCATAGCTATAAAAATACAAAAAACGAGGACCTGTGGGATAGTATGGCAAGT___ATTTGCCCTACAGATGGTGTAAAAGGGATGGATGGCTTTTGCTCTAGAAGTCAACATTCATCTTCATCCTCA|GCTAGTGGCTGTTGTAAAGCAACTCCAGCACATTCCTGAATGTTCACTGTGAGACTAGAAGAAAcAAGACAACATCTCTCAGGAGACTGGGTTTAGGCCTGACCTAGATCCATTTCTGTAGGCCTCCAATATCATTTACCCATAAAATATTGTCAAGTCCTGCCTTAAAATTAACAGTTTCAAATACATCTTCCTATTCAAAACAATGTCCTGTCCTATAGCTCCT DKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSS|asgcckatpahs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4968 ATXN2::RAD9B ENSG00000204842.18::ENSG00000151164.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 457 FALSE NA FALSE NA ATXN2 ENSG00000204842.18 protein_coding - - chr12:111443485-111599676:- chr12:111598784:- chr12:111881289-112037480:- chr12:112036588:- RAD9B ENSG00000151164.19 protein_coding + + chr12:110501655-110533556:+ chr12:110506579:+ chr12:110939460-110971361:+ chr12:110944384:+ chr12:111597959,chr12:111597962 chr12:110506529,chr12:110506526 NA NA chr12:112035763,chr12:112035766 chr12:110944334,chr12:110944331 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Rad9(71%) |DUF1725(100%),Rad9(82%) 6 8 10 31 35 ENST00000642389.2 ENST00000433301.5 upstream upstream duplicates(3),low_entropy(1),mismappers(1) GCAGCAGCAGCCGCCGCCCGCGGCTGCCAATGTCCGCAAGCCCGGCGGCAGCGGCCTTCTAGCGTCGCCCGCCGCCGCGCCTTCGCCGTCCTCGTCCTCGGTCTCCTCGTCCTCGGCCACGGCTCCCTCCTCGGTGGTCGCGGCGACCTCCGGCGGCGGGAGGCCCGGCCTGGGCAG|TCAATTTTGCCCATCTTTAGATGTCTGAATTCCCTTGAAAGAAATATAGAGAAGTGCAGAATATTCACCAGATCTGATAAATGCAAAGTAGTTATTCAATTCTTCTACAGACATG___ATTGCTTGCTGATGCCATTGTTCTTTTTACATCAAGTCAAGAGGAAGTTACTCTTGCTGTTAC QQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGs|qfcpsldv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4970 EEA1::ENSG00000257767 ENSG00000102189.17::ENSG00000257767.3 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 841 TRUE 309 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ENSG00000257767 ENSG00000257767.3 protein_coding + + chr12:111753890-111791418:+ chr12:111783158:+ chr12:112191694-112229222:+ chr12:112220962:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 0 9 12 348 156 ENST00000322349.13 ENST00000546840.3 upstream upstream duplicates(3) CAGCTTTCAAGTGAAAAGTTGATGGATAAAGAACAACAAGTGGCTGATTTACAACTCAAACTTTCTCGGTTAGAAGAGCAG___TTGAAGGAAAAAGTTACAAATTCTACAGAATTGCAGCATCAATTAGATAAAACAAAGCAACAGCATCAAGAACAACAGGCTCTTCAGCAAAGCACCACGGCAAAACTTCGAGAAGCTCAG|GAAGATGTGGACAAGGCAGTGAAGGCCGCCCGGGCCGCCTTCCAGCTGGGCTCACCTTGGCGCCGCATGGACGCATCACACAGGGGCCGGCTGCTGAACCGCCTGGCCGATCTGATCGAGCGGGACCGGACCTACCTGGCG___GCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCG___GTATTATGCCGGCT QLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQ|edvdkavkaaraafqlgspwrrmdashrgrllnrladlierdrtylaaletldngkpyvisylvdldmvlkclryyag NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4971 EEA1::ENSG00000257767 ENSG00000102189.17::ENSG00000257767.3 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 841 TRUE 309 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ENSG00000257767 ENSG00000257767.3 protein_coding + + chr12:111753890-111791418:+ chr12:111785267:+ chr12:112191694-112229222:+ chr12:112223071:+ chr12:92824304,chr12:92824301,chr12:92824268,chr12:92824258,chr12:92824257,chr12:92824248 chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236 NA NA chr12:93218080,chr12:93218077,chr12:93218044,chr12:93218034,chr12:93218033,chr12:93218024 chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 5 4 6 348 201 ENST00000322349.13 ENST00000546840.3 upstream upstream duplicates(2) CTCATGGTAGGCTGAAGGAACAGAGACAGCTTTCAAGTGAAAAGTTGATGGATAAAGAACAACAAGTGGCTGATTTACAACTCAAACTTTCTCGGTTAGAAGAGCAG___TTGAAGGAAAAAGTTACAAATTCTACAGAATTGCAGCATCAATTAGATAAAACAAAGCAACAGCATCAAGAACAACAGGCTCTTCAGCAAAGCACCACGGCAAAACTTCGAGAAGCTCAG|GCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCG___GTATTATGCCGGCTGGGCTGATAAGTACCACGGGAAAACCATCCCCATTGACGGAGACTTCTTC HGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQ|aletldngkpyvisylvdldmvlkclryyagwadkyhgktipidgdf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4972 EEA1::ALDH2 ENSG00000102189.17::ENSG00000111275.13 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE TRUE 458 TRUE 842 TRUE 310 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ALDH2 ENSG00000111275.13 protein_coding + + chr12:111766887-111817532:+ chr12:111783158:+ chr12:112204691-112255336:+ chr12:112220962:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Aldehyde_dehydrogenase_family(93%) |Aldedh(95%) 0 9 12 348 156 ENST00000322349.13 ENST00000261733.7 upstream upstream duplicates(3) CAGCTTTCAAGTGAAAAGTTGATGGATAAAGAACAACAAGTGGCTGATTTACAACTCAAACTTTCTCGGTTAGAAGAGCAG___TTGAAGGAAAAAGTTACAAATTCTACAGAATTGCAGCATCAATTAGATAAAACAAAGCAACAGCATCAAGAACAACAGGCTCTTCAGCAAAGCACCACGGCAAAACTTCGAGAAGCTCAG|GAAGATGTGGACAAGGCAGTGAAGGCCGCCCGGGCCGCCTTCCAGCTGGGCTCACCTTGGCGCCGCATGGACGCATCACACAGGGGCCGGCTGCTGAACCGCCTGGCCGATCTGATCGAGCGGGACCGGACCTACCTGGCG___GCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCG___GTATTATGCCGGCT QLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQ|EDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6761 chr12:111799834-111799905:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE aldehyde dehydrogenase 2 family (mitochondrial) 2 leiomyoma mesenchymal fusion translocation 4973 EEA1::ALDH2 ENSG00000102189.17::ENSG00000111275.13 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 459 TRUE 842 TRUE 310 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ALDH2 ENSG00000111275.13 protein_coding + + chr12:111766887-111817532:+ chr12:111785267:+ chr12:112204691-112255336:+ chr12:112223071:+ chr12:92824304,chr12:92824301,chr12:92824268,chr12:92824258,chr12:92824257,chr12:92824248 chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236 NA NA chr12:93218080,chr12:93218077,chr12:93218044,chr12:93218034,chr12:93218033,chr12:93218024 chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Aldehyde_dehydrogenase_family(83%) |Aldedh(88%) 5 4 6 348 201 ENST00000322349.13 ENST00000261733.7 upstream upstream duplicates(2) CTCATGGTAGGCTGAAGGAACAGAGACAGCTTTCAAGTGAAAAGTTGATGGATAAAGAACAACAAGTGGCTGATTTACAACTCAAACTTTCTCGGTTAGAAGAGCAG___TTGAAGGAAAAAGTTACAAATTCTACAGAATTGCAGCATCAATTAGATAAAACAAAGCAACAGCATCAAGAACAACAGGCTCTTCAGCAAAGCACCACGGCAAAACTTCGAGAAGCTCAG|GCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCG___GTATTATGCCGGCTGGGCTGATAAGTACCACGGGAAAACCATCCCCATTGACGGAGACTTCTTC HGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQ|ALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6761 chr12:111799834-111799905:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE aldehyde dehydrogenase 2 family (mitochondrial) 2 leiomyoma mesenchymal fusion translocation 4974 MOCS1::VPS13B ENSG00000124615.20::ENSG00000132549.20 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MOCS1 ENSG00000124615.20 protein_coding - - chr6:39899578-39934551:- chr6:39934295:- chr6:39867354-39902290:- chr6:39902034:- VPS13B ENSG00000132549.20 protein_coding + - chr8:99013266-99877580:+ chr8:99406759:- chr8:100025494-100889808:+ chr8:100418987:- chr6:39928854,chr6:39928857 chr8:99407138,chr8:99407138 NA NA chr6:39896593,chr6:39896596 chr8:100419366,chr8:100419366 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 4 1 8 90 3 ENST00000373188.6 unknown upstream downstream duplicates(1),low_entropy(1),mismatches(2) GCCAGTGTGCTCCCGAAGCGGGCTGCGGTTCCGCTCGTATCAGGCTTCATGGCGGCGCGGCCACTGTCCCGGATGCTGCGGCGGCTTCTGAGGTCCAGCGCCCGGAGCTGCAGCTCAGGGGCTCCGGTGACCCAGCCCTGCCCCGGGGAGTCCGCGCGAGCTGCCTCGGAG|ATATAACCTAAAGTTCATCATAACAGAAGCCATGTCATACATTACCTGCAATTCCCCAACCCACTAGCACAGAGTGGAGAACACTGACTAGAG___GGCTGCTGGCATATTCAGAGGCCTGATATGATTGCTGCTTTGCCAAGGGGGCACTTCCAATAGACACCTCATCCTCTTTCCTTCTACAAACTGGCATAACAAGAGGAACAGCTACCACAGGCTGCTGGAAAGAGAC...AAGCAGCAAAGGTTAAACATGGCAATACTGAGGACAGTCCTTCACAAGTTGGGGCTGAGACTTCATTATTGTAAATCAATCAATCTCTCCCTCCCTCATCT MAARPLSRMLRRLLRSSARSCSSGAPVTQPCPGESARAASE|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4977 RAB30::PPFIA1 ENSG00000137502.10::ENSG00000131626.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 461 FALSE NA FALSE NA RAB30 ENSG00000137502.10 protein_coding - - chr11:82973133-83071923:- chr11:83071691:- chr11:82684175-82782965:- chr11:82782733:- PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70354301:+ chr11:70116796-70231418:+ chr11:70200407:+ chr11:83070421,chr11:83070424 chr11:70352711,chr11:70352708 NA NA chr11:82781463,chr11:82781466 chr11:70198817,chr11:70198814 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 3 2 5 68 373 ENST00000527633.6 ENST00000253925.12 upstream upstream duplicates(3) CTGCTGCTGGGCTTGCGATTGCCGCTCGCTCCAGCTGAGCTAAGTGTAGCAGCAGCACCAGGGCAGGGACTGACTCCAGCCCTTGGACTCAGGACATCGCAGACCTTCCCTTGCGTGCGTGACTCATTCGCACATCCATTTCTGTTTATGCCTGGGGTGGGGAGAAAAATCCCAAACCAG|TTGCCACCTTCCAGAGAAGAGGTACGAGATGACAAGACAACCATAAAGTGTGAAACCTCCCCGCCTTCCTCCCCGAGAGCCCTTCGGTTAGACCGGCTGCACAAAGGGGCGCTGCACACCGTCAGCCACGAGGACATCAGGGACATAAGGAA___CTCCACAGGCTCCCAGGATGGTCCCGTGAGCAACCCCAGCAGTAGCAACAGTAGCCAGGACTCGCTCCACAAAGCCCCAAAGAAGAAAGGCATTAAGTCCTCCATTGGCCGCTTGTTTGGCAAGAAAGAAAAGGGCCGACCTGGACAAACTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4978 RFTN2::ANKS1B ENSG00000162944.11::ENSG00000185046.21 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RFTN2 ENSG00000162944.11 protein_coding - - chr2:197568224-197676045:- chr2:197595991:- chr2:198432948-198540769:- chr2:198460715:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99053309:- chr12:99120235-100378714:- chr12:99447087:- chr2:197584893,chr2:197584895 chr12:99057720,chr12:99057719 NA NA chr2:198449617,chr2:198449619 chr12:99451498,chr12:99451497 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Raftlin(91%)|Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(32%) Raftlin(76%)|PID(100%),SAM_1(86%),SAM_2(86%),WD40(100%) 1 2 3 89 4 ENST00000295049.9 ENST00000547776.6 upstream downstream mismappers(1) GTTATTGAG___GGATGTGAAATCAAAACAGATTATGGCCCTCTGCTGCACACTCTGGCTGAATTCGGATGGCTTCTGACAAGCGTGTTGCCCACACCTGTATTGAGACATGACAG___TGAAGGGAATTTGGCTACAAAGCAGATCGTATTCCTTCAGAGGCCAGTTATGTGGAATTCAGCTGCTCAAACACCAGAT|ATGAGACCCATTGGGCATGATGGCTACCATCCCACCTCTGTAGCTGAGTGGCTGGATTCCATTGAACTGGGCGACTACACCAAAGCCTTTCTAATTAATGGCTACACTTCGATGGACCTGTTGAAAAAAATCTGGGA...ACAGGAAACGTATTTTGGCATCTCTGGGAGACAGGCTGCACGACGATCCCCCACAGAAGCCCCCTCGGTCCATCACCCTCAGG___GAACCCAGTGGTAATCAC VIEGCEIKTDYGPLLHTLAEFGWLLTSVLPTPVLRHDSEGNLATKQIVFLQRPVMWNSAAQTPD|MRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4979 NLGN1::NAALADL2 ENSG00000169760.18::ENSG00000177694.16 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NLGN1 ENSG00000169760.18 protein_coding + + chr3:173396284-174294372:+ chr3:173605091:+ chr3:173114074-174012162:+ chr3:173322881:+ NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:175096790:+ chr3:174156363-175528336:+ chr3:174814580:+ chr3:174075053,chr3:174075053 chr3:174548418,chr3:174548415 NA NA chr3:173792843,chr3:173792843 chr3:174266208,chr3:174266205 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Carboxylesterase_family(20%)|Peptidase_family_M28(100%) COesterase(0%)|Peptidase_M28(100%) 1 2 2 73 20 ENST00000695368.1 ENST00000454872.6 downstream upstream duplicates(1) TGGCAGATTGCCAGAAGTCATGCTTCCTGTGTGGTTTACTAATAACTTGGATGTGGTTTCATCATATGTGCAAGACCAGAGCGAAGACTGCCTATATTTAAATATATATGTCCCGACTGAGGATG|GTAAAAAGATGGCCTATCAGAAGGTCCATGCAGATCAAAGAGCTCCAGGACACTCACAGTACTTAGACAATGATGACCTTCAAGCCACTGCCCTTGACTTAGAGTGGGACATGGAGAAGGAACTAGAGGAGTCTGGTTTTGACCAATTCCAGCTAGACaGTGCTGAGAATCAGAACCTAGGGCATTCAGAGACTATAGACCTCAATCTTGATTCCATTCAACCAGCAACTTCACCCAAAGGAAGGTTCCAGAGACTTCAA GRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTED|gKKMAYQKVHADQRAPGHSQYLDNDDLQATALDLEWDMEKELEESGFDQFQLDsAENQNLGHSETIDLNLDSIQPATSPKGRFQRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4789 chr3:175369540-175369621:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4982 FAM120C::GYG2 ENSG00000184083.12::ENSG00000056998.21 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM120C ENSG00000184083.12 protein_coding - - chrX:54068324-54183281:- chrX:54182500:- chrX:54094757-54209714:- chrX:54208933:- GYG2 ENSG00000056998.21 protein_coding + + chrX:2828822-2882818:+ chrX:2875810:+ chrX:2746863-2800859:+ chrX:2793851:+ chrX:54159934 chrX:2863998 NA NA chrX:54186367 chrX:2782039 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 4 1 0 34 586 ENST00000375180.7 ENST00000381163.7 upstream upstream duplicates(1) CTCAGCTGCCCGGGGCCCGGGTGCTGGTGGACGCCGGCTCGGCGCTGCCGCGGCTCTATGGCGGCTACCAGACGGATTGGGTGTGTGGCGGCCAATGGAAC...GCCAGGCTTGTGCCTATCCTGGCGGCGACGGCCTGGAGCTCGTGGTCATGTTCCCGGGGGGCCTGGGCAAGGACCGGCTGGCCGAGTGGGGCCGTCGGTGCCAGGCC...CAACAAGGGCACCCCTCCACCGCGGGCCTGGTTCCTGCCACCGGCCTGCCTGAGCCACTGCGTGAGGCTAGCACTCATCCGCTTCCGGGTCAAG|ATGATAGCTTGTCCTGAAACTGAGACTCCTGCCGTGATAACGTGTGACCCACTGTCCCAGCCTTCCCCTCAGCCTGCAGACTTCACAGAGACTGAAACCATCTTG___CAGCCAGCAAATAAAGTCGAAAGTGTCTCATCCGAGGAAACCTTCGAACCAAG NKGTPPPRAWFLPPACLSHCVRLALIRFRVK|MIACPETETPAVITCDPLSQPSPQPADFTETETILQPANKVESVSSEETFEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4984 CNKSR2::CDKL5 ENSG00000149970.16::ENSG00000008086.13 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNKSR2 ENSG00000149970.16 protein_coding + + chrX:21372801-21654695:+ chrX:21601349:+ chrX:21390919-21672813:+ chrX:21619467:+ CDKL5 ENSG00000008086.13 protein_coding + - chrX:18425583-18653629:+ chrX:18629702:- chrX:18443703-18671749:+ chrX:18647822:- chrX:21603076,chrX:21603070 chrX:18632716,chrX:18632722 NA NA chrX:21621194,chrX:21621188 chrX:18650836,chrX:18650842 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR inversion/3'-3' high none Connector_enhancer_of_kinase_suppressor_of_ras(100%),Connector_enhancer_of_kinase_suppressor_of_ras_2/3_domain(100%),PDZ_domain(100%),PH_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%)| CRIC_ras_sig(100%),DUF1170(100%),PDZ(100%),PH(100%),SAM_1(100%),SAM_2(100%)| 0 1 2 6 10 ENST00000425654.7 unknown downstream downstream none CTAAAATCAAAAGCTTTTATTTTGCTGCTGAACATCTTGATGATATGAACAG___GTGGCTTAACAGAATTAATATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATTAAGCAGGAACAAG|GTTTGGAAAGAGATGCTGCATCTCGTCTGCTACCAAGGATCATGTCTAGAGGCTACTGCTGGGGCCTCAAAGTTGAGCAAGGTTCATACTGTTACAGTCACGTGTAGCCACAATTCAACTCCCTTTAGTAGAAGTATAATACTCACTTCATATCACAAATGTATAAAAATATGGCAGATAGTGTCATAACGATACTTTCTTTAAATGAATATATTTATAAAAC KIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQ|glerdaasrllprimsrgycwglkveqgsycyshv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4985 PHKA2::CSF2RA ENSG00000044446.12::ENSG00000198223.18 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHKA2 ENSG00000044446.12 protein_coding - - chrX:18892298-18984114:- chrX:18948744:- chrX:18910416-19002232:- chrX:18966862:- CSF2RA ENSG00000198223.18 protein_coding + + chrX:1268800-1310381:+ chrX:1300491:+ chrX:1387693-1429274:+ chrX:1419384:+ chrX:18945126,chrX:18945128 chrX:1299624,chrX:1299622 NA NA chrX:18963244,chrX:18963246 chrX:1418517,chrX:1418515 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Glycosyl_hydrolases_family_15(18%)| Glyco_hydro_15(45%)| 1 2 0 62 161 ENST00000379942.5 ENST00000381524.8 upstream upstream duplicates(1),mismatches(1) CCTGGGCATGGCCTACCGTAAGAATGCAGACCGCGATGAGGACAAGGCCAAGGCCTACGAGCTGGAGCAG___AACGTGGTGAAGCTGATGCGAGGTCTTCTCC...TGATGAGACAG___GTGGCCAAAGTGGAGAAGTTCAAACACACTCAGAGCACCAAGGACAGCCTGCACGCCAAGTACAACACCGCCACCTGTGGCACGGTGGTG...GGCTTACGTATCATTTTCACTCTCGATGAGGTGGCCTTCATACAGAATCTTGTCTTTTACATAGAAGCTGCATATAAAGTCGCT|ATTAATGTTTCTGGTGATTTGGAAAATAGATACAACTTTCCAAGCTCTGAGCCCAGAGCAAAACACAGTGTGAAGATCAGAGCTGCAGACGTCCGCATCTTGAATTGGAGCTCCTGGAGTGAAGCCATTGAATTTG___GACGGATGAGTTGGCTCCCTTAATAAC GLRIIFTLDEVAFIQNLVFYIEAAYKVA|INVSGDLENRYNFPSSEPRAKHSVKIRAADVRILNWSSWSEAIEFgrmswlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4990 ZNF169::PCLO ENSG00000175787.17::ENSG00000186472.20 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF169 ENSG00000175787.17 protein_coding + + chr9:94259298-94301829:+ chr9:94278845:+ chr9:97021580-97064111:+ chr9:97041127:+ PCLO ENSG00000186472.20 protein_coding - + chr7:82754012-83162930:- chr7:83079409:+ chr7:82383328-82792246:- chr7:82708725:+ chr9:94287261,chr9:94287260 chr7:83057989,chr7:83057985 NA NA chr9:97049543,chr9:97049542 chr7:82687305,chr7:82687301 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 0 1 10 2 ENST00000395395.7 unknown downstream upstream none GTG___ATTTGCCTCTGCAACTTGACTCTCCTCTAGGAAGAGTACTCCAGAGAGCAGGGATATGTCACCAGGACTCCTGACAACCAGGAAGGAG|GGGTAGAAATAACTCTGCTGGAACCATTGAGGGGG...GAAGAAGAAGAAGAAGAAAAGAAAAACTCTTCTTTCAGCACTTCCTTCCGATTTCCAGTTTTTAAATTTTTCTAAATATTTTGTTTGAATATAAAATAGCT MSPGLLTTRKE|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 4991 DIAPH2::REPS2 ENSG00000147202.19::ENSG00000169891.18 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DIAPH2 ENSG00000147202.19 protein_coding + + chrX:96684712-97604997:+ chrX:96738762:+ chrX:95939711-96859996:+ chrX:95993761:+ REPS2 ENSG00000169891.18 protein_coding + - chrX:16946658-17153272:+ chrX:16948069:- chrX:16964781-17171395:+ chrX:16966192:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Diaphanous_GTPase-binding_Domain(7%)| Drf_GBD(0%)| 1 1 0 82 2 ENST00000324765.13 unknown downstream downstream none GGAAGAGGTGCCGCCGAGTCAGCGCGGGGCAGTGTGAGCGCCCCGAGGTGCTTTCTCAGTTGAGGAGAGGTGGGGTTACAGGGCACAGGTGACAGGGCCGG...GTGAGTTTCCTGCAGCTCAGCCATTATATGATGAACGATCTTTGAATTTGTCAGAAAAGGAAGTATTGGATCTCTTTGAAAAAATGATG|GAAAAGCTTCATTTCACGTTTTGAACCTGATATTAACAGTCTTATCACCATGAAGTGCTGGTGACATGAAATGACAGACAAAGGCTTATCAAGTAGTCTTTC EFPAAQPLYDERSLNLSEKEVLDLFEKMM|eklhftf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5008 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 846 FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22127103:+ chr9:21994138-22128102:+ chr9:22127102:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 0 356 2 ENST00000644715.2 ENST00000650946.1 downstream upstream none CGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATGTAGTGTCACTCTG...TGATCCACCTGCCTTCGCCTCCCAAAGTGCTGGTATTACAGGCATGAGCCACTGTGCCCAGCCTAAATGTTTTCTTTAAAAGCAAGGTAAGTATGCCTAGA ANKAKSLLLTTIPQIGSTEWSETLHNLK|m* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5022 DMD::ENSG00000289870 ENSG00000198947.18::ENSG00000289870.1 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:31496788:- chrX:31115794-33357726:- chrX:31514905:- ENSG00000289870 ENSG00000289870.1 lncRNA - - chrX:109734672-109774764:- chrX:109735046:- chrX:108977901-109017993:- chrX:108978275:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(93%)| CAMSAP_CH(100%),CH(100%),Spectrin(6%)| 2 0 0 10 2 ENST00000357033.9 ENST00000701469.1 upstream downstream duplicates(1) AAAAAATCCTGAGATCCCTGGAAGGTTCCGATGATGCAGTCCTGTTACAAAGACGTTTGGATAACATGAACTTCAAGTGGAGTGAACTTCGGAAAAAGTCTCTCAACATTAG___GTCCCATTTGGAAGCCAGTTCTGACC...TGAATTAAGCCGGCAGGCACCTATTGGAGGCGACTTTCCAGCAGTTCAGAAGCAGAACGATGTACATAGG|AGCTGGAGGAACTTCAGTAAGCTGAAGACTCTGTTCAGAGG ELSRQAPIGGDFPAVQKQNDVHR|swrnfsklktlfr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3915,hsa-mir-548f-5 chrX:32583656-32583752:-,chrX:32641474-32641559:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5035 FGFR3::TACC3 ENSG00000068078.20::ENSG00000013810.21 RT112 SRR8615432 SRR8670752 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 853 FALSE NA FGFR3 ENSG00000068078.20 protein_coding + + chr4:1793293-1808872:+ chr4:1806683:+ chr4:1795020-1810599:+ chr4:1808410:+ TACC3 ENSG00000013810.21 protein_coding + + chr4:1712858-1745171:+ chr4:1739702:+ chr4:1714585-1746898:+ chr4:1741429:+ chr4:1806962,chr4:1806962 chr4:1738194,chr4:1738191 NA NA chr4:1808689,chr4:1808689 chr4:1739921,chr4:1739918 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium Mitelman Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(90%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(95%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(85%),Pkinase(85%),ig(100%)|TACC_C(72%) 1 4 256 5491 3228 ENST00000412135.7 ENST00000651472.1 downstream upstream duplicates(12),mismatches(24) aACCAAC___GGCCGGCTGCCCGTGAAGTGGATGGCGCCTGAGGCCTTGTTTGACCGAGTCTACACTCACCAGAGTGACGT___CTGGTCCTTTGGGGTCCTGCTCTGGGAGATCTTCACGCTGGGGGGCTCCCCGTACCCCGGCATCCCTGTGGAGGAGCTCTTCAAGCTGCTGAAGGAGGGCCACCGCATGGACAAGCCCGCCAACTGCACACACGACCT|GTAAAGGCGACACAGGAGGAGAACCGGGAGCTGAGGAGCAGGTGTGAGGAGCTCCACGGGAAGAACCTGGAACTGGG___GAAGATCATGGACAGGTTCGAAGAGGTTGTGTACCAGGCCATGG___AGGAAGTTCAGAAGCAGAAGGAACTTTCCAAAGCTGAAATCCAG TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDl|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 3 TK FGFR P22607 FALSE NA NA NA NA NA NA TRUE Brain,Bladder,Lung,Oral_cavity,Nasopharynx,Gallbladder/Biliary_system,Kidney,Nasal_cavity/Paranasal_sinuses,Oesophagus,Uterus_cervix,Uterus_corpus,Breast,Liver,Oropharynx_and_hypopharynx,Larynx,Salivary_gland inexact TRUE Glioblastoma multiforme,Glioblastoma multiforme,Glioblastoma multiforme,Glioblastoma multiforme,Lung squamous cell carcinoma,Glioblastoma multiforme,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Glioblastoma multiforme,Lung squamous cell carcinoma,Kidney renal papillary cell carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Liver hepatocellular carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Kidney renal papillary cell carcinoma,Bladder Urothelial Carcinoma,Brain Lower Grade Glioma,Esophageal carcinoma,Esophageal carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Brain Lower Grade Glioma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,LUNG,CENTRAL_NERVOUS_SYSTEM,LUNG,LUNG,LUNG,LUNG,LUNG,CENTRAL_NERVOUS_SYSTEM,LUNG,KIDNEY,BLADDER,BLADDER,BLADDER,BLADDER,BLADDER,BLADDER,HEAD_AND_NECK,HEAD_AND_NECK,LIVER,CERVIX,KIDNEY,BLADDER,CENTRAL_NERVOUS_SYSTEM,OESOPHAGUS,OESOPHAGUS,CERVIX,CENTRAL_NERVOUS_SYSTEM,CERVIX,CERVIX,BLADDER,BLADDER,CERVIX inexact 1808661,1808661,1808661,1808661,1808661,1808661|1808661,1808661,1803470|1795770|1801250|1801539,1808661,1808661,1808661,1808661,1808661|1808661,1808661|1808410,1808661,1808661|1808661,1808661,1808661|1808410,1808661,1808661,1808661|1801539,1808661|1807396,1801539,1808661|1808661,1808661,1808661|1795770,1808661,1808661,1808661,1808661,1808661|1803752,1808661|1804791,1808661|1803752,1795770|1795192|1801539,1808661,1808661|1808661 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE 1741429,1741429,1741429,1741429,1737000,1741429|1746245,1741429,1746245|1746245|1729435|1741429,1741429,1746245,1741429,1739325,1741429|1746245,1741429|1741429,1741429,1741429|1746245,1741429,1741429|1741429,1741429,1737458,1739325|1741429,1741429|1746245,1746245,1741429|1732899,1741429,1741429|1746245,1741429,1741429,1737458,1737458,1732899|1746245,1741429|1737000,1737458|1746245,1746245|1746245|1741429,1741429,1741429|1742553 TRUE,TRUE,TRUE,TRUE,FALSE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE,TRUE,FALSE,TRUE|FALSE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE,TRUE|TRUE,TRUE,FALSE,FALSE|TRUE,TRUE|FALSE,FALSE,TRUE|FALSE,TRUE,TRUE|FALSE,TRUE,TRUE,FALSE,FALSE,FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,TRUE,TRUE|FALSE PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 3 1 Yes bladder, MM, T-cell lymphoma leukaemia_lymphoma, epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 5036 TRAF2::EPB41L4B ENSG00000127191.18::ENSG00000095203.15 RT112 SRR8615432 SRR8670752 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 463 TRUE 854 TRUE 311 TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136909994:+ chr9:139776364-139821059:+ chr9:139804446:+ EPB41L4B ENSG00000095203.15 protein_coding - - chr9:109171974-109321059:- chr9:109279921:- chr9:111934254-112083339:- chr9:112042201:- chr9:136911856,chr9:136911857 chr9:109284856,chr9:109284855 NA NA chr9:139806308,chr9:139806309 chr9:112047136,chr9:112047135 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none TRAF-type_zinc_finger(41%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(77%),FERM_adjacent_(FA)(100%),FERM_central_domain(100%) zf-C3HC4(100%),zf-RING_UBOX(100%),zf-TRAF(0%)|FA(100%),FERM_C(100%),FERM_M(100%),FERM_N(22%) 5 9 12 360 50 ENST00000247668.7 ENST00000374566.8 downstream downstream mismatches(1) CGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG___GCGCACCACGAGGTCTGCCCCAAGTTCCCCTTAACTTGTGACGGCTGCGGCAAGAAGAAGATCCCCCGGGAGAAG|AAACATGCCAAAGGCCAGGATTTGTTTGATCAGATTGTGTACCACTTGGACCTTGTGGAAACAGATTACTTTGGCCTCCAGTTCCTCGACTCTGCCCAGGTTGCG___CACTGGCTGGATCATGCCAAA RLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREK|KHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4479 chr9:136886733-136886803:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5037 TRAF2::EPB41L4B ENSG00000127191.18::ENSG00000095203.15 RT112 SRR8615432 SRR8670752 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 854 TRUE 311 TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136908231:+ chr9:139776364-139821059:+ chr9:139802683:+ EPB41L4B ENSG00000095203.15 protein_coding - - chr9:109171974-109321059:- chr9:109279921:- chr9:111934254-112083339:- chr9:112042201:- chr9:136911856,chr9:136911857 chr9:109284856,chr9:109284855 NA NA chr9:139806308,chr9:139806309 chr9:112047136,chr9:112047135 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Zinc_finger__C3HC4_type_(RING_finger)(100%)|FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(77%),FERM_adjacent_(FA)(100%),FERM_central_domain(100%) zf-C3HC4(100%),zf-RING_UBOX(100%)|FA(100%),FERM_C(100%),FERM_M(100%),FERM_N(22%) 0 1 8 344 50 ENST00000247668.7 ENST00000374566.8 downstream downstream none GTCCCAGTGATGGATGCACCTGGAAGGGGACCCTGAAAGAATACGAG___AGCTGCCACGAAGGCCGCTGCCCGCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG|AAACATGCCAAAGGCCAGGATTTGTTTGATCAGATTGTGTACCACTTGGACCTTGTGGAAACAGATTACTTTGGCCTCCAGTTCCTCGACTCTGCCCAGGTTGCG___CACTGGCTGGATCATGCCAAACCCATAAAAAAGCAGATGAAAA___TTGGACCTGCTTATGCTTTACACTTTCG PSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVK|KHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHAKPIKKQMKIGPAYALHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4479 chr9:136886733-136886803:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5093 LRRC1::NDRG3 ENSG00000137269.15::ENSG00000101079.21 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 466 TRUE 868 TRUE 312 LRRC1 ENSG00000137269.15 protein_coding + + chr6:53794497-53924125:+ chr6:53842227:+ chr6:53659295-53788923:+ chr6:53707025:+ NDRG3 ENSG00000101079.21 protein_coding - - chr20:36651766-36746090:- chr20:36656532:- chr20:35280169-35374493:- chr20:35284935:- chr6:53850905,chr6:53850904 chr20:36659718,chr20:36659719 NA NA chr6:53715703,chr6:53715702 chr20:35288121,chr20:35288122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Leucine_rich_repeat(32%)|Ndr_family(11%) LRR_8(46%)|Ndr(5%) 20 54 53 178 402 ENST00000370888.6 ENST00000349004.6 downstream downstream duplicates(11),mismatches(5) GAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGAG___CAATTTTTCCAGCTAGTCAAATTACGAAAGCTTGGACTTAGTGATAATGAAATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTGGTGGAACTAGATGTGTCTCGAAATG|ATGGCGGACTGTGGGGGACTGCCCCAGGTAGTTCAG___CCTGGGAAGCTCACCGAGGCCTTCAAGTACTTTTTGCAGGGAATGGGCTACA___TACCATCTGCCAGCATGACTCGGCTCGCCCGATCACGAACCCACTCAACCTCGAGTAGCCTCGGCTCTGGAGAAAGTCCCTTCAGCCGGT EEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRN|dgglwgtapgssaweahrglqvlfagnglhticqhdsarpitnplnle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5094 LRRC1::NDRG3 ENSG00000137269.15::ENSG00000101079.21 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 868 TRUE 312 LRRC1 ENSG00000137269.15 protein_coding + + chr6:53794497-53924125:+ chr6:53795415:+ chr6:53659295-53788923:+ chr6:53660213:+ NDRG3 ENSG00000101079.21 protein_coding - - chr20:36651766-36746090:- chr20:36656532:- chr20:35280169-35374493:- chr20:35284935:- chr6:53850905,chr6:53850904 chr20:36659718,chr20:36659719 NA NA chr6:53715703,chr6:53715702 chr20:35288121,chr20:35288122 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Leucine_rich_repeat(10%)|Ndr_family(11%) LRR_8(0%)|Ndr(5%) 1 1 17 252 402 ENST00000370888.6 ENST00000349004.6 downstream downstream duplicates(1) CCGGCGCGAGAAGCGAGCTAACCCAAGAGCCAACAACGAGCGCGGAGAGGGCAGCGGACTGAGCGGAGCCGCCGGCCAGAGCGGGCTCGGAGCCCGGGTCTCCGCCGCTCGGGACCCGGCTAGGCGGCGGCGGGGGCGGCGATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCATCGACAAGCGCCACTGCTCGCTGGTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGAG|ATGGCGGACTGTGGGGGACTGCCCCAGGTAGTTCAG___CCTGGGAAGCTCACCGAGGCCTTCAAGTACTTTTTGCAGGGAATGGGCTACA___TACCATCTGCCAGCATGACTCGGCTCGCCCGATCACGAACCCACTCAACCTCGAGTAGCCTCGGCTCTGGAGAAAGTCCCTTCAGCCGG MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPE|MADCGGLPQVVQPGKLTEAFKYFLQGMGYIPSASMTRLARSRTHSTSSSLGSGESPFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5095 LRRC1::NDRG3 ENSG00000137269.15::ENSG00000101079.21 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 868 TRUE 312 LRRC1 ENSG00000137269.15 protein_coding + + chr6:53794497-53924125:+ chr6:53842227:+ chr6:53659295-53788923:+ chr6:53707025:+ NDRG3 ENSG00000101079.21 protein_coding - - chr20:36651766-36746090:- chr20:36653701:- chr20:35280169-35374493:- chr20:35282104:- chr6:53850905,chr6:53850904 chr20:36659718,chr20:36659719 NA NA chr6:53715703,chr6:53715702 chr20:35288121,chr20:35288122 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Leucine_rich_repeat(32%)|Ndr_family(0%) LRR_8(46%)|Ndr(0%) 1 0 22 178 544 ENST00000370888.6 ENST00000349004.6 downstream downstream duplicates(2),mismatches(1) CCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGAG___CAATTTTTCCAGCTAGTCAAATTACGAAAGCTTGGACTTAGTGATAATGAAATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTGGTGGAACTAGATGTGTCTCGAAATG|TACCATCTGCCAGCATGACTCGGCTCGCCCGATCACGAACCCACTCAACCTCGAGTAGCCTCGGCTCTGGAGAAAGTCCCTTCAGCCGGTCTGTCACCAGCAATCAGTCAGATGGAACTCAAGAATCCTGTGAGTCCCCTGATGTCCTGGACAGACACCAGACCATGGAGGTGTCCTGCTAAGCAGATGCTCCTCCCCTGGACCATTGCAAGTCCATCCTTCAAATGACCACTCCATAATATAACATTTCATCCAGTAAACTGGCCTCTACTATC EEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRN|vPSASMTRLARSRTHSTSSSLGSGESPFSRSVTSNQSDGTQESCESPDVLDRHQTMEVSC* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5096 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 20 19 17 420 91 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(8),mismappers(1),mismatches(5) GCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___TA AGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|igfshmarniaastsrvlrsttstt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5098 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120504:+ chr9:21994138-22128102:+ chr9:22120503:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 5 0 2 420 166 ENST00000644715.2 ENST00000428597.6 downstream upstream none GGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAG...TGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAGCTGTGGCAGAACCAGGACTGGAACCTATATCTCTCTACTAATGGTTTTTTTAAAAAAATAACCTTGTTTCAAAAATATTAAAAAGTCACAAGAAAGGTAAACATGTGGATAAACAAAATGAAGA AKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|vrklkyrkmksdlpkhidqscgrtrtgtyisllmvflkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5099 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 0 2 5 456 91 ENST00000644715.2 ENST00000577551.5 downstream upstream duplicates(1) GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___CTATGTCTCACAGTCCAGACTTGGAG VLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|igfshmarniaastsrvlrsttsttamshspdl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5100 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22118644:+ chr9:21994138-22128102:+ chr9:22118643:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 5 420 110 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(1) TGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCA...GTCAGAAACCCTCCATAACCTGAAG|CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAGAATAAAACTTAATCCCTTAAGTAGATTCACCATAAGTTAGCTCAGAGCAATTCCAGTGCAAGTATGGTCTGTGATCCAGTAG___TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTT SETLHNLK|lcltvqtwstsnkknkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5101 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120200:+ chr9:21994138-22128102:+ chr9:22120199:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 2 3 420 143 ENST00000644715.2 ENST00000428597.6 downstream upstream none TGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGCAGCTTTCTGCTACATGGAGGCTAGGGCCAGAGTCAAGATTTATGCTTTGCAGCACACTGGTCAGCTGTTTTTGCAAATCAGATTAAATGATTTTTAAATGAGGCTGAGAGCATGGGAGATACTAATGTGTGTTTCCTTGTGAGCTACTGCATAA___GTTAGGAAATTGAAATACAGAAA AKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|yltdsklnivgcmsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5102 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120504:+ chr9:21994138-22128102:+ chr9:22120503:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 1 0 0 423 166 ENST00000644715.2 ENST00000428597.6 downstream upstream none GTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAG...CTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCC SLREEIQPGDIVIIDQFIDr|lgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5103 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 869 TRUE 313 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120504:+ chr9:21994138-22128102:+ chr9:22120503:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 0 0 456 166 ENST00000644715.2 ENST00000428597.6 downstream upstream none CGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGA...ACTGCTGGAAGGAGCACGAGGAAGCA|GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAGCTGTGGCAGAACCAGG CWKEHEEA|vrklkyrkmksdlpkhidqscgrt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5105 UIMC1::FILIP1 ENSG00000087206.17::ENSG00000118407.15 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UIMC1 ENSG00000087206.17 protein_coding - - chr5:176905005-177022633:- chr5:176955959:- chr5:176332006-176449634:- chr5:176382960:- FILIP1 ENSG00000118407.15 protein_coding - + chr6:75291859-75493800:- chr6:75336107:+ chr6:76001575-76203516:- chr6:76045823:+ chr5:176955771,chr5:176955775 chr6:75334338,chr6:75334334 NA NA chr5:176382772,chr5:176382776 chr6:76044054,chr6:76044050 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RAP80_N-terminal_ubiquitin_interaction_motif(100%)| RAP80_UIM(100%),UIM(100%)| 17 11 15 186 40 ENST00000511320.6 unknown upstream upstream duplicates(4),mismatches(2) CCAACAACCAGTCATGGTCAG___TCTTCCCAAGGGATTGTTGAAGAAACTTCTGAAGAGGGAAACTCTGTACCTGCTTCACAAAG___TGTTGCTGCTTTGACCAGTAAGAGAAGCTTAGTCCTTATGCCAGAGAGTTCTGCAGAAGAAATCACTGTTTGTCCTG|CTATTTTTTAATATGGATGGGGAAACTGACATTGAAGAAGAAAACAAGAAACTATTGCCACTGCCTGGCAAGGCTGCACTAGTGCTGGGGGAAGAGGCGTCTTGGCAATTGATTGATAGACTTAATCTGGGCTTGGCACCTACTTGGAAG___CAGAGCAGGGTGTGCTCCAGAAATTCAAGAAGTGGATGCATGGCAGGGCAGGAAGAAGAACATCA PTTSHGQSSQGIVEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCP|aif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5108 GLRB::LRBA ENSG00000109738.11::ENSG00000198589.15 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 468 FALSE NA FALSE NA GLRB ENSG00000109738.11 protein_coding + + chr4:157076125-157172090:+ chr4:157122397:+ chr4:157997277-158093242:+ chr4:158043549:+ LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150436864:- chr4:151185587-151936879:- chr4:151358016:- chr4:157128071 chr4:150445544 NA NA chr4:158049223 chr4:151366696 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Neurotransmitter-gated_ion-channel_ligand_binding_domain(20%)|Beige/BEACH_domain(78%),WD_domain__G-beta_repeat(100%) Neur_chan_LBD(7%)|Beach(76%),WD40(100%) 13 5 19 47 97 ENST00000541722.5 ENST00000357115.9 downstream downstream duplicates(1),mismatches(1) TCAGCAGAGGACCTTGCCCGAGTACCTGCCAACTCCACTAGCAATATCTTGAACAGGTTATTGGTCAGTTATGATCCCAGGATAAGACCAAACTTCAAAG___GCATTCCTGTTGATGTAGTAGTCAACATTTTTATTAACAGTTTTGGATCCATTCAAGAAACAACAATG|CCAATAGGAGCTCTGAACCCAAAAAGAGCAGCATTCTTCGCTGAGCGTTATGAATCATGGGAAGATGATCAAGTTCCAAAGTTTCACTATGGTACTCATTACTCAACTGCAAGTTTTGTTCTTGCATGGCTGCTAAGAATA___GAACCCTTTACAACTTATTTCCTAAATTTGCAAGGAGGCAAATTTGATCATGCAGATCGAACTTTTTCATCAATTTCCAGAGCTTGGCGA SAEDLARVPANSTSNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTM|PIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5109 AOPEP::FANCC ENSG00000148120.19::ENSG00000158169.14 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AOPEP ENSG00000148120.19 protein_coding + + chr9:94726604-95151793:+ chr9:95080780:+ chr9:97488886-97914075:+ chr9:97843062:+ FANCC ENSG00000158169.14 protein_coding - + chr9:95099054-95426796:- chr9:95178581:+ chr9:97861336-98189078:- chr9:97940863:+ chr9:95082595,chr9:95082595,chr9:95082595 chr9:95149102,chr9:95149105,chr9:95149099 NA NA chr9:97844877,chr9:97844877,chr9:97844877 chr9:97911384,chr9:97911387,chr9:97911381 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Leukotriene_A4_hydrolase__C-terminal(59%),Peptidase_family_M1_domain(100%)| Leuk-A4-hydro_C(91%),Peptidase_M1(100%)| 2 10 12 446 74 ENST00000375315.8 unknown downstream upstream duplicates(1),low_entropy(3),mismatches(5) CAGAAGACTCTGAGCCCCCGAACTCTGCAAAGCCTCCAGAGGACATACCACCTCCAGGATCAGGATGCAGAG___GTTCGCCATCGGTGGTGTGAACTCATTGTTAAGCACAAGTTCACGAAAGCCTACAAAAGTGTGGAGAGGTTCCTTCAGGAGGATCAG|GCTGACTGGCGCCCTGTGCCCGGAGGCAGGAAGAGACGCAGGATCCAGCTTGTGTCTGTGCGTCTGTGTTTCTCCAGCTGTGGTGCCTGTGCAAAGAGTGGAACCtCAAAGAACACTGGGTGGTCAACACACGGACACAGCACCCAATACAA QKTLSPRTLQSLQRTYHLQDQDAEVRHRWCELIVKHKFTKAYKSVERFLQEDQ|adwrpvpggrkrrriqlvsvrlcfsscgacaksgtskntgwsthghstqy NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-2278,hsa-mir-6081 chr9:94809962-94810057:+,chr9:95065350-95065446:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5110 PSMC4::RXRB ENSG00000013275.8::ENSG00000204231.11 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 469 TRUE 871 TRUE 314 PSMC4 ENSG00000013275.8 protein_coding + + chr19:39971165-39981764:+ chr19:39974828:+ chr19:40477072-40487671:+ chr19:40480735:+ RXRB ENSG00000204231.11 protein_coding - - chr6:33193588-33200665:- chr6:33199416:- chr6:33161365-33168442:- chr6:33167193:- chr19:39976142,chr19:39976315,chr19:39976141 chr6:33199574,chr6:33199576,chr6:33199575 NA NA chr19:40482049,chr19:40482222,chr19:40482048 chr6:33167351,chr6:33167353,chr6:33167352 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none ATPase_family_associated_with_various_cellular_activities_(AAA)(17%),Proteasomal_ATPase_OB_C-terminal_domain(100%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%) AAA(1%),AAA_2(1%),AAA_5(1%),Prot_ATP_ID_OB(100%)|Hormone_recep(100%),zf-C4(100%) 10 4 2 537 63 ENST00000157812.7 ENST00000374680.4 downstream downstream mismatches(1) AGCATCCCGCTGGTCATCGGACAATTTCTGGAGGCTGTGGATCAGAATACAGCCATCGTGGGCTCTACCACAG___GCTCCAACTATTATGTGCGCATCCTGAGCACCATCGATCGGGAGCTGCTaAAGCCCAACGCCTaAGTGGCCCTCCACAAGCACAGCAATGCACTGGTGGACGTGCTGCCCCCCGAAGCCGACAGCAGCATCATGATGCTCACCTCAG___ACCAGAAGCCAGATGTGATGTACGCGGACATCGGAGGCATGGACATCCAGAAGCAGGAGGTGCGGGAGGCCGTGGAGCTCCCGCTCACGCATTTCGAGCTCTACAAGCAG___ATCGGCATCGATCCCCCCCGAGGCGTCCTCATGTATGGCCCACCTGGCTGTGGGAAGACCATGTTGGCAAAGGCGGTGGCACATCACACAACAG|ACTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTCCCCAGGGAGTCCCTCCCCCTTCTCCTCCTGGGCCACCCCTACCCCC SIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNA*VALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTT|dSRSPDSSSPNPLPQGVPPPSPPGPPLP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5111 PSMC4::RXRB ENSG00000013275.8::ENSG00000204231.11 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 871 TRUE 314 PSMC4 ENSG00000013275.8 protein_coding + + chr19:39971165-39981764:+ chr19:39974828:+ chr19:40477072-40487671:+ chr19:40480735:+ RXRB ENSG00000204231.11 protein_coding - - chr6:33193588-33200665:- chr6:33198464:- chr6:33161365-33168442:- chr6:33166241:- chr19:39976142,chr19:39976315,chr19:39976141 chr6:33199574,chr6:33199576,chr6:33199575 NA NA chr19:40482049,chr19:40482222,chr19:40482048 chr6:33167351,chr6:33167353,chr6:33167352 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none ATPase_family_associated_with_various_cellular_activities_(AAA)(17%),Proteasomal_ATPase_OB_C-terminal_domain(100%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Zinc_finger__C4_type_(two_domains)(100%) AAA(1%),AAA_2(1%),AAA_5(1%),Prot_ATP_ID_OB(100%)|Hormone_recep(100%),zf-C4(100%) 0 0 0 537 95 ENST00000157812.7 ENST00000374680.4 downstream downstream mismatches(1) CGCTGGTCATCGGACAATTTCTGGAGGCTGaGGATCAGAAaACAGCCATCGTGGGCgCTACCACAG___GCTCCAACTATTATGTGCGCATCCTGgGCACCA...GTATGtCCCACCTGGCTGTGGGAAGACCATGTTGGCAAAGGCGtTGGCACATCACACAACA|t|ATTAACTCAACAGTGTCACTCCCTGGGGGTGGGTCTGGC YvPPGCGKTMLAKAlAHHTT|y* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5113 PTPRM::MIB1 ENSG00000173482.17::ENSG00000101752.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 470 FALSE NA FALSE NA PTPRM ENSG00000173482.17 protein_coding + + chr18:7566782-8406861:+ chr18:7955414:+ chr18:7566780-8406859:+ chr18:7955412:+ MIB1 ENSG00000101752.13 protein_coding + + chr18:21704957-21870953:+ chr18:21864526:+ chr18:19284918-19450914:+ chr18:19444487:+ chr18:7987660,chr18:7987654 chr18:21828392,chr18:21828383 NA NA chr18:7987658,chr18:7987652 chr18:19408353,chr18:19408344 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Fibronectin_type_III_domain(49%),Immunoglobulin_domain(100%),MAM_domain__meprin/A5/mu(100%)|Zinc_finger__C3HC4_type_(RING_finger)(32%) MAM(100%),fn3(1%),ig(100%)|zf-C3HC4_2(100%),zf-C3HC4_3(1%) 1 2 4 37 135 ENST00000332175.12 ENST00000261537.7 downstream upstream none AAAG___AACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACCTACCTGTGGATACAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTGCACGGCCA...CCACGAGCTATAAAATTGGACACCTTGACCCAGATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACTGGCTCTCCTGGTCCAGCTCTCAGGACAAGAACAAAGTGTGCTG|ACAATGTGCCCTGTGTGTCTAGATCGTCTGAAGAATATGATTTTCCTTTGTGGTCACGGAACCTGTCAACTCTGTGGAGACCGCATGAGTGAATGTCCTATCTGTCGCAAGGCTATTGAACGAAGG TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA|dnvpcvsrsseeydfplwsrnlstlwrphe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5114 ENSG00000286133::ARFIP1 ENSG00000286133.2::ENSG00000164144.16 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286133 ENSG00000286133.2 lncRNA - - chr4:157568731-157824256:- chr4:157823802:- chr4:158489883-158745408:- chr4:158744954:- ARFIP1 ENSG00000164144.16 protein_coding + + chr4:152779937-152918463:+ chr4:152910064:+ chr4:153701089-153839615:+ chr4:153831216:+ chr4:157705158,chr4:157705162 chr4:152905905,chr4:152905901 NA NA chr4:158626310,chr4:158626314 chr4:153827057,chr4:153827053 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Arfaptin-like_domain(11%) |Arfaptin(0%) 2 2 2 6 73 ENST00000652341.2 ENST00000451320.6 upstream upstream mismatches(1) CCCCAAGCAGAGTTCTGGCCAGGAGGCTTCTGAACAGGTTCAAATTGTTACAAAGATCAGCTGGAGAGTTCCTTCTCCCTGTGGCGTTTTCCCTGCACCTCTGGCCACCCTCCGGAAGGATCCCTATGGTGCCAGGgAGGAATGACCTGCTTGGGGACCCAGTGAGCTCACAGGGCCTTTCCCACTTCTTCCTCTACCTGTGTATTTCACTTGGCTCTCTACATCGACTCAGCTCCAG|GTTAAAGTATTGCACAATCAGCTGGTCCTTTTCCACAATGCCATTGCCGCTTACTTTGCTGGGAATCAGAAGCAGCTTGAACAGACACTTAAACAGTTCCATATCAAATTGAAAACCCCTGGAGTGGATGCCCCATCTTGGCTTGAAGAACAGTAAAATagCAGCGaAAAAgAAAAAGAAAGTCGCGTTGTTATATTTCTAAACCAACCTAACAAGAATTAAGCAGAGTTGGGGGAAGTGGGAGGGGTGACAAGCATTATAGTGATTCTTGCACAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5116 PTPRG::ZNF546 ENSG00000144724.20::ENSG00000187187.14 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:62191653:+ chr3:61547243-62283284:+ chr3:62177327:+ ZNF546 ENSG00000187187.14 protein_coding + + chr19:39984134-40021038:+ chr19:40006096:+ chr19:40490041-40526945:+ chr19:40512003:+ chr3:62193019 chr19:39998799 NA NA chr3:62178693 chr19:40504706 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Eukaryotic-type_carbonic_anhydrase(100%),Fibronectin_type_III_domain(71%)|C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) Carb_anhydrase(100%),fn3(4%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 1 2 1 31 3 ENST00000474889.6 ENST00000347077.9 downstream upstream duplicates(1),mismatches(1) CTCTAAAG___TTTGCAGCTCTCCACCCATCCACATGAAGGTGCAGCCTCTGAACCAGACGGCACTGCAGGTGTCCTGGAGCCAGCCGGAGACTATCTACCACCCACCCATCATGAACTACATGATCTCCTACAGCTGGACCAAGAATGAGGACGAGAAGGAGAAGACGTTTACAAAGGACAGCGACAAAGACTTG|CCCCGGTTTCTCTGGATTCTGTGCTTCTCCATGGAGGAAACTCAAGGAGAACTGACAAGTTCTTGTGGTTCTAAAACCATGGCCAAT___GTATCTTTGGCATTTAGGGATGTGTCCATAGACCTCTCCCAAGAGGAGTGGGAGTGCCTGGACGCTGTGCAGAGGGACTTGTACAAGGATGTGATGTTGGAGAAC SKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIMNYMISYSWTKNEDEKEKTFTKDSDKDL|PRFLWILCFSMEETQGELTSSCGSKTMANVSLAFRDVSIDLSQEEWECLDAVQRDLYKDVMLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5119 KRT7::KRT8 ENSG00000135480.17::ENSG00000170421.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 872 TRUE 315 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52241533:+ chr12:52626304-52645970:+ chr12:52635317:+ KRT8 ENSG00000170421.13 protein_coding - - chr12:52897187-52949954:- chr12:52900003:- chr12:53290971-53343738:- chr12:53293787:- NA NA NA NA NA NA NA NA sense sense in-frame CDS CDS inversion medium none Intermediate_filament_protein(51%),Keratin_type_II_head(100%)|Intermediate_filament_protein(48%) Filament(54%),GA(100%),Keratin_2_head(100%)|Filament(23%) 1 6 17 55854 30893 ENST00000331817.6 ENST00000552551.5 downstream downstream mismappers(14),mismatches(3) CTGGAGGCCAAGGTGGATGCCCTGAATGATGAGATCAACTTCCTCAGGACCCTCAATGAGACG___GAGTTGACAGAGCTGCAGTCCCAGATCTCCGACACATCTGTGGTGCTGTCCATGGACAACAG|CCGCTCCCTGGACATGGACAGCATCATTGCTGAGGTCAAGGCACAGTACGAGGATATTGCCAACCGCAGCCGGGCTGAGGCTGAGAGCATGTACCAGATCAAGTATGAGGAGCTGCAGAGCCTGGCTGGGAAGCACGGGGATGACCTGCGGCGCACAAAGACTGAGATCTCTGAGATGAACCGGAACATCAGCCGGCTCCAGGCTGAGATTGAGGGCCTCAAAGGCCAG___AGGGCTTCCCTGGAGGCCGCCATTGCAGATGCCGAGC LEAKVDALNDEINFLRTLNETELTELQSQISDTSVVLSMDNs|RSLDMDSIIAEVKAQYEDIANRSRAEAESMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQAEIEGLKGQRASLEAAIADAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-9898 chr12:52898889-52898984:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5120 KRT7::KRT8 ENSG00000135480.17::ENSG00000170421.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 872 TRUE 315 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52235366:+ chr12:52626304-52645970:+ chr12:52629150:+ KRT8 ENSG00000170421.13 protein_coding - - chr12:52897187-52949954:- chr12:52901219:- chr12:53290971-53343738:- chr12:53295003:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Intermediate_filament_protein(28%),Keratin_type_II_head(100%)|Intermediate_filament_protein(71%) Filament(12%),Keratin_2_head(100%)|Filament(43%) 6 14 1 41251 52322 ENST00000331817.6 ENST00000552551.5 downstream downstream low_entropy(1),mismappers(1),mismatches(3) TTCGGGGTCAGCTTGAGGCACTGCAGGTGGATGGGGGCCGCCTGGAGGCGGAGCTGCGGAGCATGCAGGATGTGGTGGAGGACTTCAAGAA?AA|GTATGAGGATGAGATCAATAAGCGTACAGAGATGGAGAACGAATTTGTCCTCATCAAGAAG___GATGTGGATGAAGCTTACATGAACAAGGTAGAGCTGGAGTCTCGCCTGGAAGGGCTGACCGACGAGA RGQLEALQVDGGRLEAELRSMQDVVEDFK?k|YEDEINKRTEMENEFVLIKKDVDEAYMNKVELESRLEGLTDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-9898 chr12:52898889-52898984:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5125 KRT7::KRT8 ENSG00000135480.17::ENSG00000170421.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 872 TRUE 315 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52237569:+ chr12:52626304-52645970:+ chr12:52631353:+ KRT8 ENSG00000170421.13 protein_coding - - chr12:52897187-52949954:- chr12:52900683:- chr12:53290971-53343738:- chr12:53294467:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Intermediate_filament_protein(35%),Keratin_type_II_head(100%)|Intermediate_filament_protein(65%) Filament(27%),Keratin_2_head(100%)|Filament(34%) 0 3 4 54128 51295 ENST00000331817.6 ENST00000552551.5 downstream downstream duplicates(5),mismappers(2),mismatches(2) GGCCTTCGGGGTCAGCTTGAGGCACTGCAGGTGGATGGGGGCCGCCTGGAGGCGGAGCTGCGGAGCATGCAGGATGTGGTGGAGGACTTCAAGAATAA___GTACGAAGATGAAATTAACCACCGCACAGCTGCTGAGAATGAGTTTGTGGTGCTGAAGAAG|GATGTGGATGctGCcTACATGAgCAAGGTAGAGCTGGAGTCTCGCCTGGAAGGGCTGACCGACGAGATCAACTTCCTCAGGCAGCT?TATGAAGAG___GAGATCCGGGAGCTGCAGTCCCAGATCTCGGACACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCC GLRGQLEALQVDGGRLEAELRSMQDVVEDFKNKYEDEINHRTAAENEFVVLKK|DVDaAYMsKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-9898 chr12:52898889-52898984:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5143 BAIAP2::SLC38A10 ENSG00000175866.16::ENSG00000157637.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BAIAP2 ENSG00000175866.16 protein_coding + + chr17:81035122-81117434:+ chr17:81057967:+ chr17:79008922-79091234:+ chr17:79031767:+ SLC38A10 ENSG00000157637.13 protein_coding - + chr17:81244811-81295547:- chr17:81265442:+ chr17:79218611-79269347:- chr17:79239242:+ chr17:81073933,chr17:81073934 chr17:81265101,chr17:81265099 NA NA chr17:79047733,chr17:79047734 chr17:79238901,chr17:79238899 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none IRSp53/MIM_homology_domain(25%)| IMD(30%)| 0 2 3 389 16 ENST00000428708.7 unknown downstream upstream none GCCATGGGGAAGAATTACGAGAAGGCACTGGCAG___GTGTGACGTATGCAGCCAAAGGCTACTTTGACGCCCTGGTGAAGATGGGGGAGCTGGCCAGCGAGAGCCAGGGCTCCAAAGAACTCG|GGCCGACCTATTTTCCTGTCCCCTGGTTGATCTTCTGAGGACGAGCTGGAACATTCCTTCTTTTTCACGTCTTTCTCCAGCA...TTCCCTGTCCACCCCAGCATATCACCAGTTGTGGCTCTTCCTGAGGTCCCTGGGCTGGGTACAGGCACCATATCGCTGAGAGTACTCAGACAGGCCAAGGC AMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKEL|gptyfpvpwlif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5158 TMLHE-AS1::MTMR1 ENSG00000224533.4::ENSG00000063601.17 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMLHE-AS1 ENSG00000224533.4 lncRNA + + chrX:155466540-155611616:+ chrX:155509901:+ chrX:154696201-154841277:+ chrX:154739562:+ MTMR1 ENSG00000063601.17 protein_coding + + chrX:150692971-150765108:+ chrX:150730525:+ chrX:149861444-149933581:+ chrX:149898997:+ chrX:155523426,chrX:155523427 chrX:150730204,chrX:150730202 NA NA chrX:154753087,chrX:154753088 chrX:149898676,chrX:149898674 NA NA sense sense unknown intron CDS/splice-site duplication high none |Myotubularin-like_phosphatase_domain(100%) |Myotub-related(98%) 6 7 4 11 87 ENST00000433624.1 ENST00000485376.5 downstream upstream none CTAAAGGGAGCACATTGTTGAGAAGGACCGGTTGCAAATTTCCAAAAAGGAGAGTAAAATAATTAATGAGTCAAGGTCTCAGGAGAGACAGAAG___GCTCACCATCTAtATGCAGAAGCAAGATCAAGAACACGGAATAACCACAGAGGTGCCTCTACTGAAGAGCAAATG|GCACTATTTGCATTCAGCTATAAAGAAAAATTTCCAATTAATGGCTGGAAAGTTTATGATCCAGTATCTGAATATAAGAGACAG___GGCTTGCCAAATGAGAGTTGGAAAATATCCAAAATAAACAGTAATTATGAGTTCTGTGACACCTACCCTGCCATCATTGTTGTGCCAACTAGTGTAAAAaATGATaACCTTTCAAAAGTGGCAGCTTTTCGAGCAAAAGGCAGAGTCCCT___GTGTTGTCATGGATTCATCCGGAAAGTCAAGCAACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5159 TMLHE::MTMR1 ENSG00000185973.12::ENSG00000063601.17 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMLHE ENSG00000185973.12 protein_coding - + chrX:155489011-155719098:- chrX:155509901:+ chrX:154718672-154948759:- chrX:154739562:+ MTMR1 ENSG00000063601.17 protein_coding + + chrX:150692971-150765108:+ chrX:150730525:+ chrX:149861444-149933581:+ chrX:149898997:+ chrX:155523426,chrX:155523427 chrX:150730204,chrX:150730202 NA NA chrX:154753087,chrX:154753088 chrX:149898676,chrX:149898674 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |Myotubularin-like_phosphatase_domain(100%) |Myotub-related(98%) 4 7 0 11 87 unknown ENST00000485376.5 downstream upstream none AGGCTCACCATCTAtATGCAGAAGCAAGATCAAGAACACGGAATAACCACAGAGGTGCCTCTACTGAAGAGCAAATG|GCACTATTTGCATTCAGCTATAAAGAAAAATTTCCAATTAATGGCTGGAAAGTTTATGATCCAGTATCTGAATATAAGAGACAGG...___GGCTTGCCAAATGAGAGTTGGAAAATATCCAAAATAAACAGTAATTATGAGTTCTGTGACACCTACCCTGCCATCATTGTTGTGCCAACTAGTGTAAAAaATGATaACCTTTCAAAAGTGGCAGCTTTTCGAGCAAAAGGCAGAGTCCCT___GTGTTGTCATGGATTCATCCGGAAAGTCAAGCAACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5163 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 879 TRUE 316 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10620419:- chrX:10413350-10851773:- chrX:10588459:- chrX:10879244,chrX:10879246 chrX:10802859,chrX:10802858 NA NA chrX:10897364,chrX:10897366 chrX:10820978,chrX:10820977 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion high none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 0 1 3 9 51 ENST00000669054.1 ENST00000380785.5 upstream downstream mismappers(1) TGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|ATTTCGCCGGGTTGCTTTTGTCTTGCGGGCTCCTGTCGGGTTCGGTGTTTCCGCTCTGAAGACTGCG...CCCTGCCGGATGGGTCATGGGATTCTAAACATGAGGCAG___ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5164 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 879 TRUE 316 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11038603:- chrX:10865697-11129340:- chrX:11056723:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10567603:- chrX:10413350-10851773:- chrX:10535643:- chrX:10879244,chrX:10879246 chrX:10802859,chrX:10802858 NA NA chrX:10897364,chrX:10897366 chrX:10820978,chrX:10820977 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion high none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 0 1 2 8 74 ENST00000669054.1 ENST00000380787.5 upstream downstream none AGAAGTAGAAGCCTGCACAGTCCACAGAACT|ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAAACACTGGAGTCAGAACTGACCTGCCCTATTTGTCTGGAGCTCTTTGAGGACCCTCTTCTACTGCCCTGCGCACACAGCCTCTGCTTCAACTGCGCCCACCGCATCCTAGTATCACACTGTGCCACCAACGAGTCTGTGGAGTCCATCACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5165 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 879 TRUE 316 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10567603:- chrX:10413350-10851773:- chrX:10535643:- chrX:10879244,chrX:10879246 chrX:10802859,chrX:10802858 NA NA chrX:10897364,chrX:10897366 chrX:10820978,chrX:10820977 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion high none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 1 0 2 9 74 ENST00000669054.1 ENST00000380787.5 upstream downstream none GCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|ATAGCTGATCAGCTTCCTTGGGTTTTGCTGATGACACAAGAGAGCTTTGCCTGAAGATGGAAACACTGGAGTCAGAACTGACCTGCCCTATTTGTCTGGAGCTCTTTGAGGACCCTCTTCTACTGCCCTGCGCACACAGCCTCTGCTTCAACTGCGCCCACCGCATCCTAGTATCACACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5166 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 879 TRUE 316 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11038603:- chrX:10865697-11129340:- chrX:11056723:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10677727:- chrX:10413350-10851773:- chrX:10645767:- chrX:10879244,chrX:10879246 chrX:10802859,chrX:10802858 NA NA chrX:10897364,chrX:10897366 chrX:10820978,chrX:10820977 NA NA sense sense unknown exon/splice-site 5'UTR deletion/read-through low none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 1 0 3 8 2 ENST00000669054.1 ENST00000453318.6 upstream downstream mismappers(1) CCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTAAGTTTCCTGAGGCCTTCCCAGAAGTAGAAGCCTGCACAGTCCACAGAACT|GGTCACTATGAAAGAGGCAGCCTGCCCCAGTTTGGGTATTCTGAAGTGTTAGTATGTAGTGGAGCTGGTGGTGTGAAGCTGATTCATTTTGTTTCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5167 ADAM17::ENSG00000240687 ENSG00000151694.15::ENSG00000240687.4 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM17 ENSG00000151694.15 protein_coding - - chr2:9488486-9556732:- chr2:9555509:- chr2:9628615-9696861:- chr2:9695638:- ENSG00000240687 ENSG00000240687.4 lncRNA + - chr2:9638707-9712920:+ chr2:9655598:- chr2:9778836-9853049:+ chr2:9795727:- chr2:9554851,chr2:9554853 chr2:9657690,chr2:9657692 NA NA chr2:9694980,chr2:9694982 chr2:9797819,chr2:9797821 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 1 3 326 4 ENST00000310823.8 unknown upstream downstream none CGGGAACATGAGGCAGTCTCTCCTATTCCTGACCAGCGTGGTTCCTTTCGTGCTGGCGCCGCGACCTCCGGATGACCCGGGCTTCGGCCCCCACCAGAGACTCG|CTCAAAGATCGAAGGAAGACCAGAGTCTGACAGTCATCGAGTCTGACGCACTCCCACTGCAGCAAAAaTTTGAATTCCCCTCTCCAGCATTCTGG...TTCCAGGGAAGCCTCTTCCACCCTGGGACAATTCAGATTATGAAAGGACACTCAGATACAGAGCTGAAACTCTCTACCTAATTGTTCCTTTTGGGTTTCAC MRQSLLFLTSVVPFVLAPRPPDDPGFGPHQRL|aqrskedqsltviesdalplqqkfefpspaf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5177 ASNSP1::ASNSP1 ENSG00000248498.5::ENSG00000290398.1 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 881 TRUE 317 ASNSP1 ENSG00000248498.5 transcribed_unprocessed_pseudogene - - chr8:46579213-46614523:- chr8:46614277:- chr8:47490835-47526145:- chr8:47525899:- ASNSP1 ENSG00000290398.1 lncRNA - - chr8:46579213-46638886:- chr8:46615174:- chr8:47490835-47550508:- chr8:47526796:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 3 3 1 180 182 ENST00000518311.3 ENST00000641735.1 upstream downstream duplicates(2),mismatches(2) CCGCCTTTCTGTTCAGTGTCTGAGTGCTATGTAGATTGCACACAGGGGTCCAGATGCATTCTGTTTTGAGAATGTCAGTGGATACACCAATAGCTGCTTTGGATTTCACCAGAACCGCTGTTTGGAATGCAGCCAATTCAAGTGAAGAAATATCCATATTTGTGGCTCTGTTACAGTGGTGAAATCTACAACCATAAGAAG|ACTTTCTTCAATCACACCTGAATAAATCACTTAGAG___AGAGCTTATAGCTTCATTCCACCACGTGTGGCATTTGGCCCTGTTTGGCAGTGATGACCGCCTTTCTGTTCAGTGTCTGAGTGCTATGTAGATTGCACACAGGGGTCCAGATGCATTCTGTTTTGAGAATGTCAGTGGATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5178 ASNSP1::ASNSP1 ENSG00000248498.5::ENSG00000290398.1 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 881 TRUE 317 ASNSP1 ENSG00000248498.5 transcribed_unprocessed_pseudogene - - chr8:46579213-46614523:- chr8:46614277:- chr8:47490835-47526145:- chr8:47525899:- ASNSP1 ENSG00000290398.1 lncRNA - - chr8:46579213-46638886:- chr8:46614534:- chr8:47490835-47550508:- chr8:47526156:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 1 180 213 ENST00000518311.3 ENST00000641735.1 upstream downstream same_gene(1) TGCACACAGGGGTCCAGATGCATTCTGTTTTGAGAATGTCAGTGGATACACCAATAGCTGCTTTGGATTTCACCAGAACCGCTGTTTGGAATGCAGCCAATTCAAGTGAAGAAATATCCATATTTGTGGCTCTGTTACAGTGGTGAAATCTACAACCATAAGAAG|AGAGCTTATAGCTTCATTCCACCACGTGTGGCATTTGGCCCTGTTTGGCAGTGATGACCGCCTTTCTGTTCAGTGTCTGAGTGCTATGTAGATTGCACACAGGGGTCCAGATGCATTCTGTTTTGAGAATGTCAGTGGATACACCAATAGCTGCTTTGGATTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5179 GMEB1::TAF12 ENSG00000162419.13::ENSG00000120656.14 RPMI7951 SRR8615437 SRR8670765 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GMEB1 ENSG00000162419.13 protein_coding + + chr1:28668778-28719353:+ chr1:28683740:+ chr1:28995290-29045865:+ chr1:29010252:+ TAF12 ENSG00000120656.14 protein_coding - + chr1:28587829-28648291:- chr1:28642978:+ chr1:28914341-28974803:- chr1:28969490:+ chr1:28689839,chr1:28689834 chr1:28624678,chr1:28624670 NA NA chr1:29016351,chr1:29016346 chr1:28951190,chr1:28951182 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' medium none none none 0 2 2 91 695 ENST00000294409.2 unknown downstream upstream mismatches(2) GCGGCGGCGGTGGCGGTAGCTGCCGTGGCGGCCTCTGCGCATGCTCCGTCGCCTGCCCGCCCTGGCCGCTCGCCGCCCGCCCGCCCGACGGAGACG___CAGTC...GTGAAAGATGGCTAATGCAGAAGTGAGTGTCCCAGTGGGGGATGTGGTTGTGGTACCTACTGAAGGAAATGAAGGGGAGAATCCTGAAGACACTAAAACCCAAGTGATTTTGCAGTTACAGCCTGTGCAACAAGG|GGCCCAAGACTCACAGGCAGCAGCGTCTATCTCCCCATGATATGCAGAGACTGCCCCAGTGAAGCGTTCGTCTCAGCAGCCGGTCCGACTGCGCGGCCCTCCCCGACTACTTCCGGCACCGCTCCCCGCCTCCAACCCGGAAACGCGCGGCTCTTCCGGCCGGCGGGCGCGCGCCTCGCTTGCGCAGGCGCAGACTGCCCTCCGACACGTGGTGGCGATATTGAGCTGTGTGTAGG MANAEVSVPVGDVVVVPTEGNEGENPEDTKTQVILQLQPVQQg|aqdsqaaasisp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5208 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158633476:+ chr4:159236463-159574524:+ chr4:159554628:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Leucine_rich_repeat(85%),Low-density_lipoprotein_receptor_domain_class_A(100%)| LRR_4(100%),LRR_5(84%),LRR_8(89%),Ldl_recept_a(100%)| 152 178 212 6238 596 ENST00000460056.6 ENST00000419357.6 downstream downstream duplicates(41),mismappers(1),mismatches(132) GCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGTAATTTAACTGTTTT___AGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATT___GGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGCTTATATTCAAGGACCTGAAGGAGCTGTCACAATT|GCCCTAGAAACAAGAACCAATCCAGCAGCAACAAGCATCTCTGGCAGTCTATCATTTCCCTTCAACTGAAATCAGATCTTCTTAAAGAAATGCTTGGCTCTCAGACTGGGAACGGAAATGTACAAGATGTGCTTCGATATCTGGTCAAATCAGAAACTCAAAAAGCTATCAAAGTCTCTTTGGACTGTGTCAGAAAGAGGTGAAAAGACTCCCACTTGCCAAAGACGGGACAATTTGAGCATTCATAAGA NHIHNLRNLTFISCSNLTVLVMRKNKINHLNENTFAPLQKLDELDLGSNKIENLPPLIFKDLKELSQl|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5209 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158633476:+ chr4:159236463-159574524:+ chr4:159554628:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30814772:- chr6:30765988-30798436:- chr6:30782549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Leucine_rich_repeat(85%),Low-density_lipoprotein_receptor_domain_class_A(100%)| LRR_4(100%),LRR_5(84%),LRR_8(89%),Ldl_recept_a(100%)| 14 22 248 6238 76 ENST00000460056.6 ENST00000399196.1 downstream downstream duplicates(13),mismappers(1),mismatches(31) ATTTAACTGTTTT___AGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATT___GGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGCTTATATTCAAGGACCTGAAGGAGCTGTCACAATT|TTATGAAGAAGACTTGAGCAGGCAGTCCAGAGCTGATACAGCTGCTCCAATCACCAGAGATGCAATCTCCTGCTAGATGTCTTCACATCTACCTTTCTATGTCACATGTGCAAGATGGTTGCTCTGCCTTCAGACATCACATTTACATTCCAGGCAGAAAGGAGAAGGAAAGAGCAAAAGATGTGTTCCGAACAAATCCATCTTAAAAACAAACAAGGGGAGGGGTAGCAGGAGAAAATTTAAAAAGAAGAAGAAGAAAAACAAAAACAGGAAAGCCGTTGT LTVLVMRKNKINHLNENTFAPLQKLDELDLGSNKIENLPPLIFKDLKELSQf|yeedlsrqsradtaapitrdaisc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5210 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158628709:+ chr4:159236463-159574524:+ chr4:159549861:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30814772:- chr6:30765988-30798436:- chr6:30782549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Leucine_rich_repeat(72%),Low-density_lipoprotein_receptor_domain_class_A(100%)| LRR_4(100%),LRR_5(78%),LRR_8(80%),Ldl_recept_a(100%)| 1 4 145 5572 76 ENST00000460056.6 ENST00000399196.1 downstream downstream duplicates(4),mismatches(17) ACACATGCCAAGACTACATTGGCT___GGACCTTGAAGGCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGTAATTTAACTGTTTT___AGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATT|TTATGAAGAAGACTTGAGCAGGCAGTCCAGAGCTGATACAGCTGCTCCAATCACCAGAGATGCAATCTCCTGCTAGATGTCTTCACATCTACCTTTCTATGTCACATGTGCAAGATGGTTGCTCTGCCTTCAGACATCACATTTACATTCCAGGCAGAAAGGAGAAGGAAAGAGCAAAAGATGTGTTCCGAACAAATCCATCTTAAAAACAAACAAGGGGAGGGGTAGCAGGAGAAAATTTAAAAAGAAGAAGAAGAAAAACAAAAACAGGAAAGC HMPRLHWLDLEGNHIHNLRNLTFISCSNLTVLVMRKNKINHLNENTFAPLQKLDEf|yeedlsrqsradtaapitrdaisc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5211 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158628709:+ chr4:159236463-159574524:+ chr4:159549861:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Leucine_rich_repeat(72%),Low-density_lipoprotein_receptor_domain_class_A(100%)| LRR_4(100%),LRR_5(78%),LRR_8(80%),Ldl_recept_a(100%)| 0 1 125 5572 596 ENST00000460056.6 ENST00000419357.6 downstream downstream duplicates(4),mismatches(13) CACATGCCAAGACTACATTGGCT___GGACCTTGAAGGCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGTAATTTAACTGTTTT___AGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATT|GCCCTAGAAACAAGAACCAATCCAGCAGCAACAAGCATCTCTGGCAGTCTATCATTTCCCTTCAACTGAAATCAGATCTTCTTAAAGAAATGCTTGGCTCTCAGACTGGGAACGGAAATGTACAAGATGTGCTTCGATATCTGGTCAAATCAGAAACTCAAAAAGCTATCAAAGTCTCTTTGGACTGTGTCAGAAAGAGGTGAAAAGACTCCCACTTGCCAAAGACGGGACAATTTGAGCATTCATAAGACTAATCA HMPRLHWLDLEGNHIHNLRNLTFISCSNLTVLVMRKNKINHLNENTFAPLQKLDEl|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5212 TRPC4AP::AVPI1 ENSG00000100991.12::ENSG00000119986.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 889 TRUE 319 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35044505:- chr20:33590207-33680610:- chr20:33632308:- AVPI1 ENSG00000119986.7 protein_coding - - chr10:97677424-97687241:- chr10:97679915:- chr10:99437181-99446998:- chr10:99439672:- chr20:35038503,chr20:35038515 chr10:97680021,chr10:97680030 NA NA chr20:33626306,chr20:33626318 chr10:99439778,chr10:99439787 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Thyroid_cancer_protein_1(100%) |TC1(100%) 98 86 145 594 468 ENST00000252015.3 ENST00000370626.4 upstream downstream duplicates(17),mismatches(24) AGAAGACATTCTTACAAACAGCAACCCTCATTGAAGATATTTTGGGTGTTAAAAAG___GAAATGATCCGACTAGATGAAGTCCCCAATCTGAGTTCCTTAGTATCCAATTTCGATCAGCAGCAGCTCGCTAATTTCTGCCGGATTCTGGCTGTCACCATTTCAGAGATGGATACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG|AGCATCCACAATGGGTACCCCAGCCTCGGTGGTCAGTGAGCCACCCCCTTGGCAGGCCCCGATTGAGGCCCGGGGCCGCAAGCAGGCCTCGGCCAACATCTTCCAGGACGCCGAGCgGCTGCAGATCCAAGCCCTGTTTCAACGCAGCGGGGACCAGCTGGCCGAGGAACGGGCACAGATCATCTGGGAATGTGCAGGGGACCACCGTGTGGCTGAGGCCCTCAAGAGGCTGCGCAGGAAGAGGCCCCCAAGGCAGAAACCCCTGGGCCACTCGCTACACCACTGCAGC KTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQ|ehpqwvpqprwsvshplgrprlrpgaasrprptssrtpsgcrskpcfnaagtswprnghrssgnvqgttvwlrpsrgcagrgpqgrnpwatrytta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5213 TRPC4AP::AVPI1 ENSG00000100991.12::ENSG00000119986.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 889 TRUE 319 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35044505:- chr20:33590207-33680610:- chr20:33632308:- AVPI1 ENSG00000119986.7 protein_coding - - chr10:97677424-97687241:- chr10:97678025:- chr10:99437181-99446998:- chr10:99437782:- chr20:35038503,chr20:35038515 chr10:97680021,chr10:97680030 NA NA chr20:33626306,chr20:33626318 chr10:99439778,chr10:99439787 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 0 1 9 594 693 ENST00000252015.3 ENST00000370626.4 upstream downstream duplicates(1),mismatches(5) AAAAG___GAAATGATCCGACTAGATGAAGTCCCCAATCTGAGTTCCTTAGTATCCAATTTCGATCAGCAGCAGCTCGCTAATTTCTGCCGGATTCTGGCTGTCACCATTTCAGAGATGGATACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG|AATCCTGGAGCCCCACTC...ACTGGCCAACCCACAGAGTGCCACAGAGACAGCCTCCAGTGAGCAGTATCTGCACTCTAGGAAGAAAAGTGCCAGGATCCGCCGGAACTGGAGGAAGTCAGGCCCCACAAGCTACCTCCACCAGATCAGACACTGATCCAGGGAAAGAGCCAGGAATGGCAGTGTCTTCCCTCTTGCCAAAAGGCCTGGGGAGGTGAAGGAAGAGAGACTTTAGGCAAGCAGCCCAAAGGGGTAAATGAAAGCAAGAGGCTGCTGCCACTGACCTGCTCCATTCAGAACAAGACTGGATGCTTCTGTTGAGCTCTCCATTATGTGGGAC KEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQ|eswspt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5214 CLTC::RPS6KB1 ENSG00000141367.13::ENSG00000108443.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 474 TRUE 890 TRUE 320 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59910562:+ chr17:57970407-58027935:+ chr17:57987923:+ chr17:59643211,chr17:59643209,chr17:59643110 chr17:59904862,chr17:59904862,chr17:59904997 NA NA chr17:57720572,chr17:57720570,chr17:57720471 chr17:57982223,chr17:57982223,chr17:57982358 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 108 74 92 629 324 ENST00000269122.8 ENST00000225577.9 downstream upstream duplicates(9),mismatches(17) GCGCTGCGCCCGGTTCCGCCATTGCGGCTCTCCTGGCCCCTGGAGCCTCCGCCCCCGACCCGAGCTCTTTCGTCTGCCTGCCAGTTTCCTGCGTCCCCGGAGAGGATCCTGCTGAGCCCAGCCTCCCCCCTCCCCTTCTCCTCCTCTCCCTTGGAGAGCCCGGGCAGCCACTGCCCCGCAGCCCCAGTGACAGGAGGAGACCATAACCCCCGACAGCGCCATGGCCCAGATTCTGCCAATTCGTTTTCAGGAGCATCTCCAG|GGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACT___TGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAG___GTTTTTCAAGTACGA MAQILPIRFQEHLQ|GQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5215 CLTC::RPS6KB1 ENSG00000141367.13::ENSG00000108443.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 890 TRUE 320 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59912684:+ chr17:57970407-58027935:+ chr17:57990045:+ chr17:59643211,chr17:59643209,chr17:59643110 chr17:59904862,chr17:59904862,chr17:59904997 NA NA chr17:57720572,chr17:57720570,chr17:57720471 chr17:57982223,chr17:57982223,chr17:57982358 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 0 0 629 343 ENST00000269122.8 ENST00000225577.9 downstream upstream mismatches(1) CGCAGCCCCAGTGACAGGAGGAGgCCATAACCCCCGAgAGCGCCATGGCgCAGATTCTGCCAcTTCGTTTTCgGGAGCATCTCCAG|TGGCATGGAACATTG...ATCTACAGAGACCTGAAtCCGGAGAATATCATGCTTAATCgCCAAG___GTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAAC MAQILPlRFrEHLQ|whgt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5221 RNH1::DEAF1 ENSG00000023191.17::ENSG00000177030.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 475 TRUE 892 TRUE 321 RNH1 ENSG00000023191.17 protein_coding - - chr11:494512-507300:- chr11:497971:- chr11:494512-507300:- chr11:497971:- DEAF1 ENSG00000177030.19 protein_coding - - chr11:644233-707118:- chr11:644654:- chr11:644233-707118:- chr11:644654:- chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Capping_Ribonuclease_inhibitor_Leucine_Rich_Repeat(100%),Leucine_Rich_repeat(83%)|MYND_finger(24%) LRR_6(99%),LRR_RI_capping(100%)|zf-MYND(0%) 37 44 59 1675 342 ENST00000356187.9 ENST00000683307.1 upstream downstream duplicates(5),low_entropy(6),mismatches(14) AACGAGCTGGGGGATGAGGGTGCCCGACTGCTGTGTGAGACCCTGCTGGAACCTGGCTGCCAGCTGGAGTCGCTGTG___GGTGAAGTCCTGCAGCTTCACAGCCGCCTGCTGCTCCCACTTCAGCTCAGTGCTGGCCCAGAACAGGTTTCTCCTGGAGCTACAGATAAGCAACAACAGGCTGGAGGATGCGGGCGTGCGGGAGCTGTGCCAGGGCCTGGGCCAGCCTGGCTCTGTGCTGCGGGTGCTCTG|GACTGGAAGGATCACCAGCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGACGAAGTCCACGTGGCTGAAAGCGTGATGGAGAAGGTGACCGTGTGAGGCTCCATCGGCCGCCCTGGGAGCTGGGGCCCCTCGCACTCCTGTGAGGCTTTTGCAGGTCGAAGGCCCCCCTGAGGACTCTGGGGGGACGTTGAGAAGAGGGGTGTGGGAAGGTAAAGAAACTTGCTGGACAAGTCATTAACA NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLw|tgritstyaasqqlspsrqtkstwlka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 507113|506609 FALSE|FALSE 644654|644654 TRUE|TRUE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5222 RNH1::DEAF1 ENSG00000023191.17::ENSG00000177030.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 476 TRUE 892 TRUE 321 RNH1 ENSG00000023191.17 protein_coding - - chr11:494512-507300:- chr11:497971:- chr11:494512-507300:- chr11:497971:- DEAF1 ENSG00000177030.19 protein_coding - - chr11:644233-707118:- chr11:646555:- chr11:644233-707118:- chr11:646555:- chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Capping_Ribonuclease_inhibitor_Leucine_Rich_Repeat(100%),Leucine_Rich_repeat(83%)|MYND_finger(24%) LRR_6(99%),LRR_RI_capping(100%)|zf-MYND(20%) 5 2 63 1675 9 ENST00000356187.9 ENST00000685854.1 upstream downstream duplicates(2),mismatches(6) CTCAGCCTGGCCGGCAACGAGCTGGGGGATGAGGGTGCCCGACTGCTGTGTGAGACCCTGCTGGAACCTGGCTGCCAGCTGGAGTCGCTGTG___GGTGAAGTCCTGCAGCTTCACAGCCGCCTGCTGCTCCCACTTCAGCTCAGTGCTGGCCCAGAACAGGTTTCTCCTGGAGCTACAGATAAGCAACAACAGGCTGGAGGATGCGGGCGTGCGGGAGCTGTGCCAGGGCCTGGGCCAGCCTGGCTCTGTGCTGCGGGTGCTCTG|GCCCCAGGGAGTGGCTCAAACCTGTAGACCAGAGAAGGAAGCATCTAGAACTCCTGGGGGCCTTGTCCGCCGCCCACATCCTCTCACGGGGGGCAGCTCCCATGAGGGGTGCAGGCCCCTCACCCCACACAGAGTCTCGGCAGGAACCGGAACCCTTCCTGGTTGCCCCAGAGTGGAGGCCCGGGAGGGGCGGGCGGTGGGTCTGCACCCGATGCTGCAGTTTGCTGAT___GACTGGAAGGATCACCAGCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGACGAAGTCC LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLw|PQGVAQTCRPEKEASRTPGGLVRRPHPLTGGSSHEGCRPLTPHRVSAGTGTLPGCPRVEAREGRAVGLHPMLQFADDWKDHQHICGQSAAVTVQADEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 507113|506609 FALSE|FALSE 644654|644654 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5223 TBL1X::SHROOM2 ENSG00000101849.18::ENSG00000146950.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 477 TRUE 893 TRUE 322 TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9640360:+ chrX:9431360-9709077:+ chrX:9608400:+ SHROOM2 ENSG00000146950.13 protein_coding + + chrX:9786429-9949443:+ chrX:9937134:+ chrX:9754469-9917483:+ chrX:9905174:+ chrX:9651182,chrX:9651181 chrX:9936010,chrX:9936006 NA NA chrX:9619222,chrX:9619221 chrX:9904050,chrX:9904046 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Apx/Shroom_domain_ASD2(100%) |ASD2(100%) 20 42 32 102 143 ENST00000407597.7 ENST00000380913.8 downstream upstream duplicates(3),mismappers(2),mismatches(12),multimappers(1) GGAAGAAAATCATACCATATCAGATGCCTCGCAGAGCACCAGGCCCACCGTGAAAG___GCTGGTCCCTGCAGACGGCTTCCCATTTTTATGACCGGATGCTGGGAAGCCTGCTGGTCCACAGGTCCATACATGAAGTCACCATAAG|AATTGAGCGGGTGATGGACAACAACACCACGGTGAAGATGGTGCCCATCAAGATCGTGCACTCGGAGAGCCAGCCAGAGAAGGAGAGCCGCCAGAGCCTGGCATGCCCCGCCGAGCCACCTGCCCTGCCCCACGGGCTGGAGAAAGACCAGATCAAGACGCTGAGCACATCTGAGCAGTTCTACTCGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5224 TBL1X::SHROOM2 ENSG00000101849.18::ENSG00000146950.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 893 TRUE 322 TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9640360:+ chrX:9431360-9709077:+ chrX:9608400:+ SHROOM2 ENSG00000146950.13 protein_coding + + chrX:9786429-9949443:+ chrX:9939195:+ chrX:9754469-9917483:+ chrX:9907235:+ chrX:9651182,chrX:9651181 chrX:9936010,chrX:9936006 NA NA chrX:9619222,chrX:9619221 chrX:9904050,chrX:9904046 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Apx/Shroom_domain_ASD2(78%) |ASD2(81%) 3 1 2 102 100 ENST00000407597.7 ENST00000380913.8 downstream upstream none GGGCAGGCTCAAGGGgAGGCCCCACCATGTCCTTCTGGGGGGCCTTGAATGGCAACTGATACATAATAAGACACAATCTATTCTGCTGATTCACAATTATG...GAAAATCATACCATATCAGATGCCTCGCAGAGCACCAGGCCCACCGTGAAAG___GCTGGTCCCTGCAGACGGCTTCCCATTTTTATGACCGGATGCTGGGAAGCCTGCTGGTCCACAGGTCCATACATGAAGTCACCATAAG|GAAAGAGGAGCCCAGCGTGCCTGCGGCCGTGTCCCTGGCCACCAATTCTACCTACTACAGCACGTCGGCCCCCAAGGCGGAGCTGCTGATCAAGATGAAGGACCTGCAGGAGCAGCAGGAGCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5225 KPNB1-DT::RAMP1 ENSG00000263766.6::ENSG00000132329.11 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KPNB1-DT ENSG00000263766.6 lncRNA - - chr17:47603860-47649449:- chr17:47636512:- chr17:45681226-45726815:- chr17:45713878:- RAMP1 ENSG00000132329.11 protein_coding + - chr2:237858893-237912106:+ chr2:237861041:- chr2:238767536-238820748:+ chr2:238769684:- chr17:47628539,chr17:47628543 chr2:237862160,chr2:237862161 NA NA chr17:45705905,chr17:45705909 chr2:238770803,chr2:238770804 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 26 26 16 51 31 ENST00000584391.6 unknown upstream downstream low_entropy(1),mismatches(3) CCCGGCGCGGGGCACGATGGGACGCCCCCGGGAAGAGGCGGAGCTGGGTTCGAGCGCTGGGGCTGCGGTTGG___GAAACTACTGGAGGATGTGGTGCACCAGAATAAGAGAATAAACCAAGAAACAGGAAGACGTGATCCAGGCAACAGGATATTCCAGTATAG|TAAATGAAAACAGTGAAGGCCATGTCAAGCCAAATGGAGAGAATAAAATTACTGCGAGATTCTGCTTTCCACGTAACTTCAGCCAAAACTCTAAAGTGGCAAGATCCGCTTTCAGATTATATTATATCGGCCTCTGAGGATTCTATGCAGATCTGCCACCCCTTGGAGAGGTTTACAAATAGGGAACAGAAATCCATGGCTCCCAAGAAGCCCTGGCCCCTCTCCTCGCTGGGCCACGAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5226 ZMYND8::NCOA3 ENSG00000101040.20::ENSG00000124151.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47294666:- chr20:45837859-45985633:- chr20:45923410:- NCOA3 ENSG00000124151.19 protein_coding + - chr20:47501887-47656877:+ chr20:47507345:- chr20:46130631-46285621:+ chr20:46136089:- chr20:47293480,chr20:47293487 chr20:47513584,chr20:47513588 NA NA chr20:45922224,chr20:45922231 chr20:46142328,chr20:46142332 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Bromodomain(6%),PHD-finger(97%)| Bromodomain(0%),PHD(60%)| 37 4 18 228 14 ENST00000446994.6 unknown upstream downstream duplicates(1),mismappers(1),mismatches(6) GGAAGGCCAAGTCCTTTGCTGTGAGCTCTGTCCCCGGGTTTATCACGCTAAGTGTCTGAGACTGACATCGGAACCAGAGGGGGACTGGTTTTGTCCTGAATGTGAG___AAAATTACAGTAGCAGAATGCATCGAGACCCAGAGTAAAGCCATGACAATGCTCACCATTGAACAGTTATCCTACCTGCTCAAGTTTGCCATTCAGAAAATGAAACAGCCAGGG|GTAAAAGCATTAAAGATGGAAGGTTCATGAACAACTTGTCAAATTGTTACAATAAATGGAAATTTTTCCAAAATCTCTAACACCTCTAACAAAAAGACT EGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPG|vkalkmegs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5227 MTMR10::OTUD7A ENSG00000166912.17::ENSG00000169918.10 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTMR10 ENSG00000166912.17 protein_coding - - chr15:30938941-30991628:- chr15:30942890:- chr15:31231144-31283831:- chr15:31235093:- OTUD7A ENSG00000169918.10 protein_coding - - chr15:31475398-31870789:- chr15:31637948:- chr15:31767601-32162992:- chr15:31930151:- chr15:30942448,chr15:30942451 chr15:31639217,chr15:31639217 NA NA chr15:31234651,chr15:31234654 chr15:31931420,chr15:31931420 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Myotubularin-associated_protein(3%),Myotubularin-like_phosphatase_domain(100%)|A20-like_zinc_finger(100%),OTU-like_cysteine_protease(100%) 3-PAP(0%),Myotub-related(100%)|OTU(100%),UBA_4(79%),zf-A20(100%) 17 14 26 228 104 ENST00000435680.6 unknown upstream downstream duplicates(2),mismatches(6) CCGGATCTCACTGTTTGGCACCTTCCTGTTCAACTCCCCTCACCAGCGAGTGAAGCAAAGCACG___GAATTTGCTATAAGCAAAAACATCCAATTGGGTGATGAGAAGGGCTTAAAATTCCCCTCTGTTTGGGACTGGTCTCTCCAGTTTACAGCAAAGGATCGCACCCTTTTCCATAACCCCTTCTACATTGGAAAGAGCACACCTTGTATACAGAATGGCTCCGTGAAGTCTTTTAAACGGACAAAG|CAGTGTTCACAGCATCTTTACCAGGAGCAGATTCCATCTCAAGAAACCACTTTCCTTGCTCATCCATAAGAAGCAACTCCCCAACTTGAGATTGTAGCAATTTAGTCACATCTTCAGACTCCACTTCTAATTCCAGTTCTCTTCCACCACATCTGCAGTTAATTCTTCCACTGAAGTCTTGGACCCCACAAAGTCATCCATGAGAGTTGGAATCCATTTCTTACAAACTCCTGTTAATGTTGATAATTTGACC RISLFGTFLFNSPHQRVKQSTEFAISKNIQLGDEKGLKFPSVWDWSLQFTAKDRTLFHNPFYIGKSTPCIQNGSVKSFKRTK|qcsqhlyqeqipsqettflahp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5228 MSI2::MRPS23 ENSG00000153944.12::ENSG00000181610.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 478 TRUE 894 TRUE 323 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57401471:+ chr17:55333212-55762050:+ chr17:55478832:+ MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57841260:- chr17:55912142-55927417:- chr17:55918621:- chr17:57434297,chr17:57434295 chr17:57843738,chr17:57843740 NA NA chr17:55511658,chr17:55511656 chr17:55921099,chr17:55921101 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(67%)|Mitochondrial_ribosomal_protein_S23(44%) RRM_1(2%)|MRP-S23(3%) 12 25 18 588 4643 ENST00000284073.7 ENST00000313608.13 downstream downstream duplicates(3),mismatches(1) ACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG___ATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTATCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAG|GAAGTTTTATTCAGTGTATGGGTCTGGTCAAAGAGCTTTTGATCTATTCAATCCAAACTTCAAGTCTACCTGTCAACG___GTTTGTGGAGAAGTACACTGAGCTACAGAAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGAAGGCTTTATTGGCAGAAGGTGTCATTTTAAGACGAGTAGGCGAAGCAAGGACT___CAACACGGA TFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK|evlfsvwvwsksf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5229 MSI2::MRPS23 ENSG00000153944.12::ENSG00000181610.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 894 TRUE 323 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57407039:+ chr17:55333212-55762050:+ chr17:55484400:+ MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57841260:- chr17:55912142-55927417:- chr17:55918621:- chr17:57434297,chr17:57434295 chr17:57843738,chr17:57843740 NA NA chr17:55511658,chr17:55511656 chr17:55921099,chr17:55921101 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(67%)|Mitochondrial_ribosomal_protein_S23(44%) RRM_1(4%)|MRP-S23(3%) 0 1 18 20 4643 ENST00000579205.5 ENST00000313608.13 downstream downstream duplicates(2),mismatches(1) CCGGCGTGGAAAGTTACAGCTCTTGAGGTCTCGTCAAAGgGGGAGATCGCTGTGGAAACCAG|GAAGTTTTATTCAGTGTATGGGTCTGGTCAAAGAGCTTTTGATCTATTCAATCCAAACTTCAAGTCTACCTGTCAACG___GTTTGTGGAGAAGTACACTGAGCTACAGAAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGAAGGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5230 MSI2::MRPS23 ENSG00000153944.12::ENSG00000181610.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 894 TRUE 323 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57401471:+ chr17:55333212-55762050:+ chr17:55478832:+ MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57841052:- chr17:55912142-55927417:- chr17:55918413:- chr17:57434297,chr17:57434295 chr17:57843738,chr17:57843740 NA NA chr17:55511658,chr17:55511656 chr17:55921099,chr17:55921101 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(67%)|Mitochondrial_ribosomal_protein_S23(24%) RRM_1(2%)|MRP-S23(1%) 0 1 10 588 5516 ENST00000284073.7 ENST00000313608.13 downstream downstream duplicates(1) CAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG___ATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGGTTATCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAG|GTTTGTGGAGAAGTACACTGAGCTACAGAAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGAAGGCTTTATTGGCAGAAGGTGTCATTTTAAGACGAGTAGGCGAAGCAAGGACT___CAACACGGAGGTAGTCACGTTTCCCGGAAATCCGAACACTTGAGTGTCAGACCACAGACTGCGTTGGAAGAAAACGA ASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGK|vcgevh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5231 MSI2::MRPS23 ENSG00000153944.12::ENSG00000181610.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 894 TRUE 323 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57841260:- chr17:55912142-55927417:- chr17:55918621:- chr17:57434297,chr17:57434295 chr17:57843738,chr17:57843740 NA NA chr17:55511658,chr17:55511656 chr17:55921099,chr17:55921101 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|Mitochondrial_ribosomal_protein_S23(44%) RRM_1(2%)|MRP-S23(3%) 0 1 7 652 4643 ENST00000284073.7 ENST00000313608.13 downstream downstream duplicates(1) CGAAACGCTCCAG___AGGCTTCGGTTTCGTCACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATT...CAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|GAAGTTTTATTCAGTGTATGGGTCTGGTCAAAGAGCTTTTGATCTATTCAATCCAAACTTCAAGTCTACCTGTCAACG___GTTTGTGGAGAAGTACACTGAGCTACAGAAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGA...TGGCAGAAGGTGTCATTTTAAGACGAGTAGGCGAAGCAAGGACT___CAACACGGAGGTAGTCACGTTTCCCGGAAATCCGAACACTTGAGTGTCAGACCACAG KVAFPRRAQPK|evlfsvwvwsksf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5232 TBC1D8::C12orf75 ENSG00000204634.13::ENSG00000235162.9 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 479 TRUE 895 TRUE 324 TBC1D8 ENSG00000204634.13 protein_coding - - chr2:101007228-101252866:- chr2:101151127:- chr2:101623690-101869328:- chr2:101767589:- C12orf75 ENSG00000235162.9 protein_coding + + chr12:105235290-105396097:+ chr12:105348602:+ chr12:105629068-105789875:+ chr12:105742380:+ chr2:101125413,chr2:101125463,chr2:101125417 chr12:105332548,chr12:105332301,chr12:105332544 NA NA chr2:101741875,chr2:101741925,chr2:101741879 chr12:105726326,chr12:105726079,chr12:105726322 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |OCC1_family(76%) |OCC1(72%) 10 22 19 136 2 ENST00000409318.2 ENST00000443585.6 upstream upstream duplicates(1),mismatches(8) GCCGGGCTGTGGTCCCCGCGCGCCGCCGTCGCCTCTCGAGCGGGCTCGGCTCACAGCGACCGGCGGCCGGGGAGATGTGAGCTGGGGCCGGCGGG?G?GGC?GG?CCGCCGCGATGTGGCTCAAGCCCGAGGAGGTGCTGCTGAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCTGCTACTTCATCCTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCG|GCCCTGCAGGAGCAGCCAAAGATGT___AACAGAAGAATCCGTAACAGAAGATGACAAGAGGAG___AAACTATGGAGGAGTATATGTTGGCCTACCATCTGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTCGGAAAA___ATTAGAAGAAAATAACATCATGACTCA MWLKPEEVLLKNALKLWVTQKSSCYFILQRRRGHGEGGGRLT|gPAGAAKDVTEESVTEDDKRRNYGGVYVGLPSEAVNMVSSQTKTVRKN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5233 TBC1D8::C12orf75 ENSG00000204634.13::ENSG00000235162.9 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 895 TRUE 324 TBC1D8 ENSG00000204634.13 protein_coding - - chr2:101007228-101252866:- chr2:101151127:- chr2:101623690-101869328:- chr2:101767589:- C12orf75 ENSG00000235162.9 protein_coding + + chr12:105235290-105396097:+ chr12:105365807:+ chr12:105629068-105789875:+ chr12:105759585:+ chr2:101125413,chr2:101125463,chr2:101125417 chr12:105332548,chr12:105332301,chr12:105332544 NA NA chr2:101741875,chr2:101741925,chr2:101741879 chr12:105726326,chr12:105726079,chr12:105726322 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |OCC1_family(64%) |OCC1(46%) 0 1 15 136 3617 ENST00000409318.2 ENST00000443585.6 upstream upstream mismatches(4) CCGGGCTGTGGTCCCCGCGCGCCGCCGTCGCCTCTCGAGCGGGCTCGGCTCACAGCGACCGGCGGCCGGGGAGATGTGAGCTGGGGCCGGCGGG?G?GGCCGGACCGCCGCGATGTGGCTCAAGCCCGAGGAGGTGCTGCTGAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCTGCTACTTCATCCTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCG|AACAGAAGAATCCGTAACAGAAGATGACAAGAGGAG___AAACTATGGAGGAGTATATGTTGGCCTACCATCTGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTCGGAAAA___ATTAGAAGAAAATAACA MWLKPEEVLLKNALKLWVTQKSSCYFILQRRRGHGEGGGRLT|eqknp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5234 TBC1D8::C12orf75 ENSG00000204634.13::ENSG00000235162.9 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 895 TRUE 324 TBC1D8 ENSG00000204634.13 protein_coding - - chr2:101007228-101252866:- chr2:101151127:- chr2:101623690-101869328:- chr2:101767589:- C12orf75 ENSG00000235162.9 protein_coding + + chr12:105235290-105396097:+ chr12:105366617:+ chr12:105629068-105789875:+ chr12:105760395:+ chr2:101125413,chr2:101125463,chr2:101125417 chr12:105332548,chr12:105332301,chr12:105332544 NA NA chr2:101741875,chr2:101741925,chr2:101741879 chr12:105726326,chr12:105726079,chr12:105726322 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |OCC1_family(46%) |OCC1(44%) 0 1 10 136 4956 ENST00000409318.2 ENST00000552457.1 upstream upstream mismatches(3) CGCGCCGCCGTCGCCTCTCGAGCGGGCTCGGCTCACAGCGACCGGCGGCCGGGGAGATGTGAGCTGGGGCCGGCGGGgGgGG??GG?C?GCCGCGATGTGGCTCAAGCCCGAGGAGGTGCTGCTGAAGAACGCGCTGAAGCTCTGGGTGACCCAGAAGAGCAGCTGCTACTTCATCCTGCAGCGGCGCCGCGGGCACGGCGAGGGGGGCGGCCGCCTCACCG|AAACTATGGAGGAGTATATGTTGGCCTACCATCTGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTCGGAAAA___ATTAGAAGAAAATAACATCATGACTCAAGAATCAAGAG___CTTGCTCATCAGTTTGGAAGGAATTTGGCTCCGTGGGACGTTGTAATGTGCAC MWLKPEEVLLKNALKLWVTQKSSCYFILQRRRGHGEGGGRLT|eTMEEYMLAYHLKLSIWCPVKQRRFGKIRRK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5235 DEPDC1B::PDE4D ENSG00000035499.13::ENSG00000113448.21 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 480 FALSE NA FALSE NA DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59215968:- chr5:58264865-59817947:- chr5:58511794:- chr5:60671404,chr5:60671413 chr5:60485129,chr5:60485135 NA NA chr5:59967231,chr5:59967240 chr5:59780956,chr5:59780962 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(98%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) DEP(0%)|PDE4_UCR(100%),PDEase_I(100%) 23 10 14 430 23 ENST00000265036.10 ENST00000502484.6 upstream downstream mismappers(2),mismatches(1) CGAGCTACCAGGCTG___TGGAATGAGACCGTGGAGCTTTTTCGTGCTAAGATGCCGTTACGGAAACATCGCTGTCGTTTCAAGAGCTATGAGCATTGTTTCACAGCGGCCGAAGCTGTGGATTGGCTGCATGAGCTGCTGAGGTGCAGTCAAAACTTCGGCCCTGAAGTGACCCGCAAACAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTGAGGAAGATTTTGAAGACAATCGTCACTTATACAG|TTTTGATGTGGACAATGGCACATCTGCGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGATCCGGGCTAATTCTCCAAGCAAATTTTGTCCACAGTCAACGACGGGAGTCCTTCCTGTATCGATCCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___GTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGA RATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYs|FDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5236 ENSG00000249901::RXFP1 ENSG00000249901.1::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000249901 ENSG00000249901.1 lncRNA - - chr4:158490766-158509908:- chr4:158509511:- chr4:159411918-159431060:- chr4:159430663:- RXFP1 ENSG00000171509.16 protein_coding + - chr4:158315311-158653372:+ chr4:158520005:- chr4:159236463-159574524:+ chr4:159441157:- chr4:158508126,chr4:158508128,chr4:158508137 chr4:158522248,chr4:158522247,chr4:158522247 NA NA chr4:159429278,chr4:159429280,chr4:159429289 chr4:159443400,chr4:159443399,chr4:159443399 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 15 16 14 1354 72 ENST00000502566.1 unknown upstream downstream duplicates(2),mismatches(2) CTCGTTAGCAGGCTCATTCCACCAATGCAAGAACCAGGCAAGATCAGAGGAGGACACAGATGAGTGGTCTCGCCCACCTGCAAGTGTGGGCTTGAATGGTGTTGCTATGGGACTCTGCGGCACTACGCTTGGtTATGCTCTGACTCTCTCTGCCTAATACTTCATGCCAAG|AACGTTTAGTGGCCTCCCTGGCCTCCACCCATTGGATGCCTGTAGCACTCTCCAGTTGCGACAATTAAAGGTGTCTCCAGCCGTTGGCAAATGTTCCTGAAGGACAAAATCGCTCCTGGTTGAGAACCACTGCATTGcAGCAAAAGACTCCCCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5238 PPP1R18::RXFP1 ENSG00000146112.12::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 896 TRUE 325 PPP1R18 ENSG00000146112.12 protein_coding - - chr6:30676389-30687895:- chr6:30684408:- chr6:30644166-30655672:- chr6:30652185:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158409323:+ chr4:159236463-159574524:+ chr4:159330475:+ chr6:30683385,chr6:30683388 chr4:158402208,chr4:158402205 NA NA chr6:30651162,chr6:30651165 chr4:159323360,chr4:159323357 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none PP1-regulatory_protein__Phostensin_N-terminal(100%),Phostensin_PP1-binding_and_SH3-binding_region(81%)|7_transmembrane_receptor_(rhodopsin_family)(100%),Leucine_rich_repeat(100%),Low-density_lipoprotein_receptor_domain_class_A(100%) Phostensin(5%),Phostensin_N(100%)|7tm_1(100%),LRR_4(100%),LRR_5(100%),LRR_8(100%),Ldl_recept_a(100%) 2 13 14 86 259 ENST00000615527.1 ENST00000460056.6 upstream upstream duplicates(3),mismatches(24) GGGGATCCCCTCATGAGCCGCCTGTTCTATGGGGTGAAGGCAGGGCCAGGGGTGGGGGCCCCCCGCCGCAGTGGACACACCTTCACCGTCAACCCCCGGCGGTCTGTGCCCCCTGCGACCCCAGCCACCCCAACCTCTCCAGCCACAGTTGATGCTGCAGTCCCGGGGGCTGGGAAGAAGCGGTACCCAACTGCCGAGGAGATCTTGGTTCTGGGGGGCTACCTCCGTCTCAGCCGCAGCTGCCTTGCCAAGGGGTCCCCCGAAAGACACCACAAACAG|CGCTGTGTAAGAAGAGCCTTTCACCTCCCGCCATGATTCTGAGGCCTCGCCAGCCATGTGGAACT___GACATATCTAGAAGGAGTCATCTTTGAAGCAGAGAGAAAGCCCTCTCCAGATACCAAATCTGCTGGCACCTTGATCCTGGATTCCC GDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSVPPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQ|rcvrrafhlpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5239 PPP1R18::RXFP1 ENSG00000146112.12::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 896 TRUE 325 PPP1R18 ENSG00000146112.12 protein_coding - - chr6:30676389-30687895:- chr6:30684408:- chr6:30644166-30655672:- chr6:30652185:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158422270:+ chr4:159236463-159574524:+ chr4:159343422:+ chr6:30683385,chr6:30683388 chr4:158402208,chr4:158402205 NA NA chr6:30651162,chr6:30651165 chr4:159323360,chr4:159323357 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none PP1-regulatory_protein__Phostensin_N-terminal(100%),Phostensin_PP1-binding_and_SH3-binding_region(81%)|7_transmembrane_receptor_(rhodopsin_family)(100%),Leucine_rich_repeat(100%),Low-density_lipoprotein_receptor_domain_class_A(100%) Phostensin(5%),Phostensin_N(100%)|7tm_1(100%),LRR_4(100%),LRR_5(100%),LRR_8(100%),Ldl_recept_a(100%) 4 9 5 86 196 ENST00000615527.1 ENST00000460056.6 upstream upstream duplicates(1),mismatches(2) CTGCCCCCCAACCTCCTGGGGATCCCCTCATGAGCCGCCTGTTCTATGGGGTGAAGGCAGGGCCAGGGGTGGGGGCCCCCCGCCGCAGTGGACACACCTTCACCGTCAACCCCCGGCGGTCTGTGCCCCCTGCGACCCCAGCCACCCCAACCTCTCCAGCCACAGTTGATGCTGCAGTCCCGGGGGCTGGGAAGAAGCGGTACCCAACTGCCGAGGAGATCTTGGTTCTGGGGGGCTACCTCCGTCTCAGCCGCAGCTGCCTTGCCAAGGGGTCCCCCGAAAGACACCACAAACAG|GACATATCTAGAAGGAGTCATCTTTGAAGCAGAGAGAAAGCCCTCTCCAGATACCAAATCTGCTGGCACCTTGATCCTGGATTCCCAGCCTCCAGAACTGTGAGCAATAAATTTCTATTGTTTACAAATTACCTAGTTAAAGGTATTTTGTTATAGCAGCCTGAATGGACTAAGACAGTATGAACTGTGTAAGTTCAGTTATTC APQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSVPPATPATPTSPATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQ|disrrshl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5240 PPP1R18::RXFP1 ENSG00000146112.12::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 896 TRUE 325 PPP1R18 ENSG00000146112.12 protein_coding - - chr6:30676389-30687895:- chr6:30684408:- chr6:30644166-30655672:- chr6:30652185:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158514845:+ chr4:159236463-159574524:+ chr4:159435997:+ chr6:30683385,chr6:30683388 chr4:158402208,chr4:158402205 NA NA chr6:30651162,chr6:30651165 chr4:159323360,chr4:159323357 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none PP1-regulatory_protein__Phostensin_N-terminal(100%),Phostensin_PP1-binding_and_SH3-binding_region(81%)|7_transmembrane_receptor_(rhodopsin_family)(100%),Leucine_rich_repeat(100%),Low-density_lipoprotein_receptor_domain_class_A(100%) Phostensin(5%),Phostensin_N(100%)|7tm_1(100%),LRR_4(100%),LRR_5(100%),LRR_8(100%),Ldl_recept_a(100%) 0 4 1 86 90 ENST00000615527.1 ENST00000460056.6 upstream upstream low_entropy(1),mismatches(2) GCCAGGGGTGGGGGCCCCCCGCCGCAGTGGACACACCTTCACCGTCAACCCCCGGCGGTCTGTGCCCCCTGCGACCCCAGCCACCCCAACCTCTCCAGCCACAGTTGATGCTGCAGTCCCGGGGGCTGGGAAGAAGC...CAACTGCCGAGGAGATCTTGGTTCTGGGGGGCTACCTCCGTCTCAGCCGCAGCTGCCTTGCCAAGGGGTCCCCCGAAAGACACCACAAACAG|ATCATCTAACCTATgCTGACTGATAAGCCTTCTAAAAGCAAAAGGAAGAAAACAGCTTTGTTAATCGAGGCCTCTTCTGCAAAGTTCACCATAGGTAAG TAEEILVLGGYLRLSRSCLAKGSPERHHKQ|ii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5241 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32623719:+ chr10:32735068-33171802:+ chr10:32912647:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 8 4 15 694 21 ENST00000238018.8 ENST00000302316.12 downstream upstream mismatches(3) CCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|GCAGTACAAGAAACATGGTGCCGGCATCTGCTTCTGGCGAGGGCCTCAGGGAGCTTCTACTCGTGCAGGAAGGTGAAGTGGGAGCAGATATGTCACACG___CTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAgTAAAGAAACAAGAAACTTCTACAGAGC MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGK|avqetwcrhlllarasgsfyscrkvkweqichtlimkyqmkgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5242 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32584232:+ chr10:32735068-33171802:+ chr10:32873160:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 5 2 17 694 16 ENST00000238018.8 ENST00000375025.10 downstream upstream mismatches(1) CCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|GCTGATGTTTCAGAAGAACAATTACAAAAGATGACTGAAGAACAAACTTACCAAGCAGCAGAAAAATCTCAAG___GCAGTACAAGAAACATGGTGCCGGCATCTGCTTCTGGCGAGGGCCTCAG...___CTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAG MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGK|advseeqlqkmteeqtyqaaeksqgstrnmvpasasgegl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5243 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32685970:+ chr10:32735068-33171802:+ chr10:32974898:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 3 8 12 694 45 ENST00000238018.8 ENST00000639629.2 downstream upstream mismatches(1) CCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|CTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAgTAAAGAAACAAGAAACTTCTACAGAGCAACCACTCACCA___TACCAGATAAAAATTCTATGTTTGTTCATCAAGATTCAGTGTCAAAACTCCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAGGCGTAATA___CTCGTA MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGK|limkyqmkgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5244 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32675665:+ chr10:32735068-33171802:+ chr10:32964593:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 0 12 694 1 ENST00000238018.8 ENST00000639290.1 downstream upstream mismatches(1) CTGGGCGCGGCCTGCAGGGTACCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|AATTCCCTTTATCGGACGTG MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGK|nslyrt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5245 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32711620:+ chr10:32735068-33171802:+ chr10:33000548:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 2 3 3 694 22 ENST00000238018.8 ENST00000639629.2 downstream upstream none CTGGGCGCGGCCTGCAGGGTACCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCC...GTGCCGCTCAGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|CTCATGATGAAGAATCAGGTGAAAATCCTATGCTTAAACATCAAGATTCAGTGTCAAAAATCCAAGTGCAATTAGAGATTCAAGAAACTTCTGAAGGAGAAGGACGTAGCA___TACCAGATAAAAATTCTATGTTTGTT AAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGK|lmmknqvkilclnikiqcqkskcn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5246 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32726734:+ chr10:32735068-33171802:+ chr10:33015662:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 0 1 1 694 49 ENST00000238018.8 ENST00000639629.2 downstream upstream none CTGGGCGCGGCCTGCAGGGTACCGGCAACCGCCCGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAG...GGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|TACCAGATAAAAATTCTATGTTTGTTCATCAAGATTCAGTGTCAAAACTCCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAGGCGTAATA___CTCGTATTGTAGTACCAAATGAAAATGTGATTTCTGTTCATCAAGATTCAAAGTCAAAACTCCAAATGC DHLLGVSDSGK|yqikilclfikiqcqnskckkrkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5248 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32814370:+ chr10:32735068-33171802:+ chr10:33103298:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation low none none none 0 1 0 694 29 ENST00000376986.5 ENST00000639629.2 downstream upstream none TGGACCTGCCCCATGGAGGTGCTGCGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA|GGCCTGATATAGAACAATTGACAGATGCATTTGGAAGAGAT...TAAATGATGCAATTAAGACGCAGTTAAAGAGAAAGAGTTACCCTG___AGACTGTCTTAAAACACTTGAAAGGTGTTAATGGAAAAGATATAATAAAGCATCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5249 DCTN4::ENSG00000290991 ENSG00000132912.13::ENSG00000290991.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 898 TRUE 327 DCTN4 ENSG00000132912.13 protein_coding - - chr5:150708440-150759095:- chr5:150715565:- chr5:150088002-150138657:- chr5:150095127:- ENSG00000290991 ENSG00000290991.1 lncRNA - - chr5:151366299-151436953:- chr5:151366658:- chr5:150745860-150816514:- chr5:150746219:- chr5:150711718,chr5:150711722 chr5:151401693,chr5:151401694 NA NA chr5:150091280,chr5:150091284 chr5:150781254,chr5:150781255 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Dynactin_p62_family(100%)| Dynactin_p62(100%)| 7 10 8 170 19 ENST00000447998.7 ENST00000647906.1 upstream downstream none CTTCGAGTGTGAGGAGGGGGACCCTGATGATATCAACAGCACTGCTAAG___GTGGTGGTGCCTCCCAAAGAGCTCGTTTTAGCTGGCAAGGATGCAGCAGCAGAGTACGATGAGTTGGCAGAACCTCAAGACTTTCAGGACGATCCTGA|GTTCCCTGGCCATCCTCATCCCCCATCTGGGCATGGTCCTTACCCAGATGAGCTTGGTGAGCAGCAGCACCCTGCCCCTCATCATCCTGTGCCTCCTGGAGATGACTACCTACTACTCAGAGTGCATGAGCTCCCTCATCATCACCAAGGACGCCCTGATCAGCATCCTGGGCTTTGTGGGATTTTTGGTGGGGACCTTCTAGGCCCTCCATGAGCTGATCCAGCC FECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPe|fpghphppsghgpypdelgeqqhpaphhpvppgddylllrvhelphhhqgrpdqhpglcgifggdllgpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5250 DCTN4::ENSG00000290991 ENSG00000132912.13::ENSG00000290991.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 898 TRUE 327 DCTN4 ENSG00000132912.13 protein_coding - - chr5:150708440-150759095:- chr5:150718276:- chr5:150088002-150138657:- chr5:150097838:- ENSG00000290991 ENSG00000290991.1 lncRNA - - chr5:151366299-151436953:- chr5:151366658:- chr5:150745860-150816514:- chr5:150746219:- chr5:150711718,chr5:150711722 chr5:151401693,chr5:151401694 NA NA chr5:150091280,chr5:150091284 chr5:150781254,chr5:150781255 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Dynactin_p62_family(100%)| Dynactin_p62(100%)| 0 1 6 176 19 ENST00000447998.7 ENST00000647906.1 upstream downstream none ATCAAATTCAAAATCCAGCTGGTCGCTGT___CAATTATATTCCAGAAGTGAGAATCATGTCAATTCCCAACCTTCGCTACATGAAG___GAGAGCCAGGTCCTCCTGACTCTTACAAATCCAGTTGAGAACCTCACCCATGTGACTCTCTTCGAGTGTGAGGAG...CTGATGATATCAACAGCACTGCTAAG|GTTCCCTGGCCATCCTCATCCCCCATCTGGGCATGGTCCTTACCCAGATGAGCTTGGTGAGCAGCAGCACCCTGCCCCTCATCATCCTGTGCCTCCTGGAGATGACTACCTACTACTCAGAGTGCATGAGCTCCCTCATCATCACCAAGGACGCCCTGATCAGCATCCTGGGCTTTGTGGGATTTTTGGTGGGGACCTTCTAGGCCCTCCATGAGCTGATCCAGCCTCAAG DDINSTAK|vpwpssspiwawslpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5251 PSME4::ASB3 ENSG00000068878.15::ENSG00000115239.24 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 481 TRUE 899 TRUE 328 PSME4 ENSG00000068878.15 protein_coding - - chr2:53864069-53970993:- chr2:53970543:- chr2:54091206-54198130:- chr2:54197680:- ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53716743:- chr2:53759810-54087297:- chr2:53943880:- chr2:53956964,chr2:53956973 chr2:53725278,chr2:53725284 NA NA chr2:54184101,chr2:54184110 chr2:53952415,chr2:53952421 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Ankyrin_repeat(11%),Ankyrin_repeats_(3_copies)(25%),Ankyrin_repeats_(many_copies)(100%),SOCS_box(100%) |Ank(0%),Ank_2(4%),Ank_4(2%),SOCS_box(100%) 6 6 13 39 76 ENST00000404125.6 ENST00000406053.5 upstream downstream duplicates(2),mismappers(1),mismatches(1) CCCTGGGCTCATGGAGCCGGCCGAGCGGGCGGGAGTCGGAGAGCCCCCGGAGCCGGGCGGGCGTCCCGAGCCGGGCCCGCGGGGCTTCGTCCCGCAGAAGGAGATCGTCTACAACAAGCTGCTGCCCTACGCGGAGCGGCTAGACGCCGAGTCCGACTTGCAGCTGGCCCAGATCAAATGCAACCTGGGCCGGGCCGTGCAGCTCCAAGAGCTGTGGCCCGGGGGCCTCTTCTGGACCAGGAAACTCTCCAC|GTGCAAATGTCAATTGTCAAGCCTTGGACAAAGCTACACCCTTGTTCATTGCTGCTCAAGAGGGACACACAAAATGTGTGGAGCTTTTGCTCTCCAGTGGGGCAGATCCTGATCTTTACTGTAATGAGGACAGTTGGCAGTTACCTATTCATGCAGCTGCACAAATGGGCCATACAAA___AATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGACACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAGCCCAG MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLGRAVQLQELWPGGLFWTRKLSt|ckcqlsslgqsytlvhccsrgthkmcgafalqwgrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5252 PSME4::ASB3 ENSG00000068878.15::ENSG00000115239.24 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 899 TRUE 328 PSME4 ENSG00000068878.15 protein_coding - - chr2:53864069-53970993:- chr2:53970543:- chr2:54091206-54198130:- chr2:54197680:- ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53714581:- chr2:53759810-54087297:- chr2:53941718:- chr2:53956964,chr2:53956973 chr2:53725278,chr2:53725284 NA NA chr2:54184101,chr2:54184110 chr2:53952415,chr2:53952421 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Ankyrin_repeats_(many_copies)(6%),SOCS_box(100%) |Ank_2(0%),Ank_4(0%),SOCS_box(100%) 1 0 5 39 72 ENST00000404125.6 ENST00000406625.6 upstream downstream duplicates(1) GTGTCCCTGGGCTCATGGAGCCGGCCGAGCGGGCGGGAGTCGGAGAGCCCCCGGAGCCGGGCGGGCGTCCCGAGCCGGGCCCGCGGGGCTTCGTCCCGCAGAAGGAGATCGTCTACAACAAGCTGCTGCCCTACGCGGAGCGGCTAGACGCCGAGTCCGACTTGCAGCTGGCCCAGATCAAATGCAACCTGGGCCGGGCCGTGCAGCTCCAAGAGCTGTGGCCCGGGGGCCTCTTCTGGACCAGGAAACTCTCCAC|AATCTTGGACTTGTT...TTACTAgCCGGGCCTGTGACACTGtGCTAAACAAAGTAAGCCCTtTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAGCCCAGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGA___CTGTGAGTTCTTTGGAATTGTGAACATTCTTTTGAAATATGGAGCCCAGA MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLGRAVQLQELWPGGLFWTRKLSt|ILDL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5254 DCTN4::ENSG00000253897 ENSG00000132912.13::ENSG00000253897.3 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 900 TRUE 329 DCTN4 ENSG00000132912.13 protein_coding - - chr5:150708440-150759095:- chr5:150715565:- chr5:150088002-150138657:- chr5:150095127:- ENSG00000253897 ENSG00000253897.3 transcribed_unprocessed_pseudogene - - chr5:151366433-151431352:- chr5:151366658:- chr5:150745994-150810913:- chr5:150746219:- chr5:150711718,chr5:150711722 chr5:151401693,chr5:151401694 NA NA chr5:150091280,chr5:150091284 chr5:150781254,chr5:150781255 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Dynactin_p62_family(100%)| Dynactin_p62(100%)| 7 9 5 170 19 ENST00000447998.7 ENST00000517788.1 upstream downstream none GGGACCCTGATGATATCAACAGCACTGCTAAG___GTGGTGGTGCCTCCCAAAGAGCTCGTTTTAGCTGGCAAGGATGCAGCAGCAGAGTACGATGAGTTGGCAGAACCTCAAGACTTTCAGGACGATCCTGA|GTTCCCTGGCCATCCTCATCCCCCATCTGGGCATGGTCCTTACCCAGATGAGCTTGGTGAGCAGCAGCACCCTGCCCCTCATCATCCTGTGCCTCCTGGAGATGACTACCTACTACTCAGAGTGCATGAGCTCCCTCATCATCACCAAGG DPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPe|fpghphppsghgpypdelgeqqhpaphhpvppgddylllrvhelphhhq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5255 DCTN4::ENSG00000253897 ENSG00000132912.13::ENSG00000253897.3 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 900 TRUE 329 DCTN4 ENSG00000132912.13 protein_coding - - chr5:150708440-150759095:- chr5:150718276:- chr5:150088002-150138657:- chr5:150097838:- ENSG00000253897 ENSG00000253897.3 transcribed_unprocessed_pseudogene - - chr5:151366433-151431352:- chr5:151366658:- chr5:150745994-150810913:- chr5:150746219:- chr5:150711718,chr5:150711722 chr5:151401693,chr5:151401694 NA NA chr5:150091280,chr5:150091284 chr5:150781254,chr5:150781255 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Dynactin_p62_family(100%)| Dynactin_p62(100%)| 0 1 4 176 19 ENST00000447998.7 ENST00000517788.1 upstream downstream none ATCAAATTCAAAATCCAGCTGGTCGCTGT___CAATTATATTCCAGAAGTGAGAATCATGTCAATTCCCAACCTTCGCTACATGAAG___GAGAGCCAGGTCCTCCTGACTCTTACAAATCCAGTTGAGAACCTCACCCATGTGACTCTCTTCGAGTGTGAGGAG...CTGATGATATCAACAGCACTGCTAAG|GTTCCCTGGCCATCCTCATCCCCCATCTGGGCATGGTCCTTACCCAGATGAGCTTGGTGAGCAGCAGCACCCTGCCCCTCATCATCCTGTGCCTCCTGGAGATGACTACCTACTACTCAGAGTGCATGAGCTCCCTCATCATCACCAAGGACGCCCTGATCAGCATCCTGGGCTTTGTGGGATTTTTGGTGGGGACCTTCTAGGCCCTCCATGAGCTGATCCAGC DDINSTAK|vpwpssspiwawslpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5256 MSI2::PPP1R12A-AS2 ENSG00000153944.12::ENSG00000258048.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57652161:+ chr17:55333212-55762050:+ chr17:55729522:+ PPP1R12A-AS2 ENSG00000258048.1 lncRNA + - chr12:79690144-79778451:+ chr12:79764101:- chr12:80083924-80172231:+ chr12:80157881:- chr17:57671021,chr17:57671022 chr12:79769146,chr12:79769145 NA NA chr17:55748382,chr17:55748383 chr12:80162926,chr12:80162925 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| RRM_1(100%)| 2 2 16 497 3 ENST00000284073.7 unknown downstream downstream inconsistently_clipped(1) CCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTATGGCTATCAGTTCCCAG___GCTTCCCAGCAGCGGCTTATGGACCAGTGGCAGCAGCGGCGGTGGCGGCAGCAAGAGGATCAG|CAAGGCCTTGCGGGACCAGGATCCTAAAAAGAAGAGGAGCACAAAAAAAGTGAACCACACATTCAGCACCACTTTTCCCCAAAGACAATTTATAACTAGTGGCCAAGAGACTGAAAAACTGAGCAGCTGTATTATCACTCACACAGGGTGGGGGATTCAGAACATTCAGTTCATGGCCTGCCAAAGGGGAGGAACTGCATTAAATACCAGCTTTTTTTTTTTTTTAAGTGGGGATCCTTGAAGGGCTATTCCCTAAAAGAAAAGCATAA NFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGS|arpcgtrilkrrgaqkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5257 MITF::ENSG00000285708 ENSG00000187098.18::ENSG00000285708.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MITF ENSG00000187098.18 protein_coding + + chr3:69739456-69968336:+ chr3:69879383:+ chr3:69788607-70017487:+ chr3:69928534:+ ENSG00000285708 ENSG00000285708.1 protein_coding - + chr3:70959226-71754229:- chr3:70971890:+ chr3:71008377-71803380:- chr3:71021041:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none MITF/TFEB/TFEC/TFE3_N-terminus(44%)| MITF_TFEB_C_3_N(0%)| 1 2 15 213 9 ENST00000314589.11 unknown downstream upstream none CTTAGAGTTCAGATGTTCATGCCATGCTCCTTTGAAAGCTTGTATCT___CAGTTCCGCCGAGCATCCTGGGGCCTCCAAGCCTCCGATAAGCTCCTCCAGTATGACATCACGCATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGGAGCGCAGGGAGCAGCAGCAGAAGCTGCAGGCGGCCCAGTTCATGCAACAGAGAGTGCCCGTGAGTCAGACACCAGCCATAAACGTCAGTGTGCCCACCACCCTTCCCTCTGCCACGCAGGTGCCGATGGAAGTCCTTAAG|TTTCGTTGCAGAAAGCTGTGGCACTGCTATTGGTGAAATGCAAAACTACATGGGATGAGTCAACCATGCAAAGCCAAAGCAACAGCAGAAAAAAAAAACAAAAGCAAGTAAAG LRVQMFMPCSFESLYLSSAEHPGASKPPISSSSMTSRILLRQQLMREQMQEQERREQQQKLQAAQFMQQRVPVSQTPAINVSVPTTLPSATQVPMEVLK|frcrklwhcyw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE melanogenesis-associated transcription factor 1 melanoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 5258 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 4 5 9 308 79 ENST00000506640.3 unknown upstream downstream mismatches(3),multimappers(4) CAAGCTCATGACTCACAATGGCCTATTTAGGCCCATACCCTACGTCACGGCAGCCTCCGCAGATGAGCCTACTGCCTCACAACAGCCTCCACAGGCACAGC...GCTCCTGCCTCCCAGCCTTCTCTCCAGGCTCTGAACTTTCTCA___GGTCTCCCTCTGTTGTCCAAGGCTGGAGTGTAGTAGTGCTATCGCAGCTGACTGCAGCCTCAACCTTCCAGGCTGAAGCGATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGATTCCTTCAACCGTCACTGAGCCTGTCTCTGTGCCAGGCGCAGAGCTGCAAAC...G unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5259 RELB::NECTIN2 ENSG00000104856.15::ENSG00000130202.10 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 482 FALSE NA FALSE NA RELB ENSG00000104856.15 protein_coding + + chr19:45001461-45038192:+ chr19:45002996:+ chr19:45504719-45541450:+ chr19:45506254:+ NECTIN2 ENSG00000130202.10 protein_coding + + chr19:44846175-44889223:+ chr19:44865271:+ chr19:45349432-45392480:+ chr19:45368528:+ chr19:45003858,chr19:45003853 chr19:44852791,chr19:44852783 NA NA chr19:45507116,chr19:45507111 chr19:45356048,chr19:45356040 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RelB_leucine_zipper(40%)|CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_V-set_domain(100%) RelB_leu_zip(13%)|C2-set_2(100%),V-set(100%),ig(100%) 3 5 10 57 587 ENST00000221452.13 ENST00000252483.10 downstream upstream low_entropy(1),mismatches(2) GGTCTGGGCCAGCCTCTGGGCCGTCCGTCCCCACTGGCCGGGCCATGCCGAGTCGCCGCGTCGCCAGACCGCCGGCTGCGCCGGAGCTGGGGGCCTTAG___GGTCCCCCGACCTCTCCTCACTCTCGCTCGCCGTTTCCAGGAGCACAG|GAGCCCAGGATGTGCGAGTTCAAGTGCTACCCGAGGTGCGAGGCCAGCTCGGGGGCACCGTGGAGCTGCCGTGCCACCTGCTGCCACCTGTTCCTGGACTGTACATCTCCCTGGTGACCTGGCAGCGCCCAGATGCACCTGCGAACCACCAGAATGTGGCCGCCTTCCACCCTAAGATGGGTCCCAGCTTCCCCAGCCCGAAGCCTGGCAGCGAGCGGCTGTCCTTCGTCTCTGCCAAGCAGAGCACTGGGCAAGACACAGAGGCAGAGCTCCA SGPASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRST|gAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5260 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 901 TRUE 330 UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193059185:- chr1:192981380-193029210:- chr1:193028315:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192627421:- chr1:192136916-192926843:- chr1:192596551:- chr1:193053477,chr1:193053483 chr1:192669596,chr1:192669599 NA NA chr1:193022607,chr1:193022613 chr1:192638726,chr1:192638729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ubiquitin_carboxyl-terminal_hydrolase__family_1(9%)| Peptidase_C12(0%)| 2 2 13 59 9 ENST00000367455.8 ENST00000642855.1 upstream downstream mismatches(1) GGCGGGTTTGCTGAGATCTGTGGCCGGCGGCAGCTGGTGCGGGGGGCAGCTGAGAGCGAGAGGTGGATCGGGGCGGTGTGTGGCCAGGGCCATGACGGGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGGGTCTTCACCGAGCTCATTAAAGGATTCG|TTGATGACATAGAAGACTTAATTTCCTCCTCATGATTAATCTCTCAGTTGGAGAGTATACACACTCTTACACAGAATCCAG___GACGAAAGCCCTCATCAG...ACTTCCCAGCCTCCAGACTG___AGGCTGAGGCGTGAGTTCATTTTAATAAATGGGAAAAGAAAGTAACCCAGGCCAAGGAGATTCATCTTTGGAAAAGAGCCT...GCcCTTTTTTCTCCTCCTGCCTTGTGAAGAAGTTTGTGTTCACTTCCCCTTCTGCCATGATTGGAAGTTTCCTGAGGCCTCCCAGCCA MTGNAGEWCLMESDPGVFTELIKGF|vddiedlisss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5261 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 901 TRUE 330 UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193059185:- chr1:192981380-193029210:- chr1:193028315:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192593657:- chr1:192136916-192926843:- chr1:192562787:- chr1:193053477,chr1:193053483 chr1:192669596,chr1:192669599 NA NA chr1:193022607,chr1:193022613 chr1:192638726,chr1:192638729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ubiquitin_carboxyl-terminal_hydrolase__family_1(9%)| Peptidase_C12(0%)| 1 3 12 59 9 ENST00000367455.8 ENST00000644134.1 upstream downstream none GGCAGCTGGTGCGGGGGGCAGCTGAGAGCGAGAGGTGGATCGGGGCGGTGTGTGGCCAGGGCCATGACGGGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGGGTCTTCACCGAGCTCATTAAAGGATTCG|GACGAAAGCCCTCATCAGATGCTTACATCATGATCTTGGACTTCCCAGCCTCCAGACTG___AGGCTGAGGCGTGAGTTCATTTTAATAAATGGGAAAAGAAAGTAACCCAGGCCAAGGAGATTCATCTTTGGAAAAG MTGNAGEWCLMESDPGVFTELIKGF|grkpssdayimildfpasrlrlrrefilingkrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5264 EXT1::TSG101 ENSG00000182197.13::ENSG00000074319.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 483 FALSE NA FALSE NA EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- TSG101 ENSG00000074319.13 protein_coding - - chr11:18468336-18526951:- chr11:18484072:- chr11:18489883-18548498:- chr11:18505619:- chr8:117881314,chr8:117881319 chr11:18489566,chr11:18489568 NA NA chr8:118893553,chr8:118893558 chr11:18511113,chr11:18511115 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Exostosin_family(73%)|Vps23_core_domain(100%) Exostosin(0%)|Ldh_1_C(100%),Ldh_1_N(100%),Vps23_core(100%) 6 4 4 75 845 ENST00000378204.7 ENST00000536719.5 upstream downstream none CAGGAGGGGAGAGGGGGTTTTTGAAGTTCAACACCATCCCTCCTCTCAGGAAGTACATGCTGGTATTCAAGGGGAAGAGGTACCTGACAGGGATAGGATCAGACACCAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCTCGCTGTGACAGAGACAACACCGAGTATGAGAA|GTCCCAGTAGGGATGGCACAATCAGCGAGGACACCATCCGAGCCTCTCTCATCTCTGCGGTCAGTGACAAACTGAGATGGCGGATGAAGGAGGAAATGGATCGTGCCCAGGCAGAGCTCAATGCCTTGAAACGAACAGAAGAAGACCTGAAAAAGGGTCACCAGAAACTGGAAGAGATGGTTACCCGTTTAGATCAAGAAGTA___GCCGAGGTTGATAAAAACATAGAACTTTTGAAAAAGAAGGATGAAGAACTCAGTTCTGCTCTGGAAAAAATGGAAA GGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEk|sq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 5265 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 6 2 5 308 86 ENST00000506640.3 unknown upstream downstream duplicates(2),mismatches(6),multimappers(4) CTGTTGTCCAAGGCTGGAGTGTAGTAGTGCTATCGCAGCTGACTGCAGCCTCAACCTTCCAGGCTGAAGCGATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGCCACACTGGTTCCTGCTGCCTGCAGCTTCCATTCTAACAGGTGTGGGGCTGATCACGAACAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5266 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 903 TRUE 331 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49316826:- chr17:47366568-47439835:- chr17:47394188:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35321735:+ chr17:33640461-33652468:+ chr17:33648754:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Zinc_finger__C2H2_type(25%)| zf-C2H2(8%)| 0 3 7 18 12 ENST00000430262.3 ENST00000702849.1 upstream upstream duplicates(1),mismatches(1) CGGGCCACAAAGGAGCCCAAAGCACCAGTCCAGAAAGCTAAGTGTGAAGAGAAAGAGACTCTGACCTGTGAGAAGTGCCCCAGGGTATTTAACACTCGCTGGTACCTGGAGAAGCACATGAACGTTACTCATAGGCGCATGCAGATTTGTGATAAATGTGGCAAGAAGTTTGTCCTGGAAAGTGAGCTGTCCCTTCACCAGCAAACAGACTGTGAAAAAAACATTCAG|AGACAATCAAGCTTTCGATGATCATGTGATGAGGTTTCCAGTCAGTTCCAGGTGAAGACACCACTGGCCATCAAGAAGCTACCCTCTCCCCACCAGACAGAGCAGGATGAGAGTTCTATAATCCTCAATAGGTAGGGACGGTGCTCCAAGTCAGCATGAAGCAGTTACAGA RATKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQ|rqssfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5267 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 903 TRUE 331 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49316826:- chr17:47366568-47439835:- chr17:47394188:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35323148:+ chr17:33640461-33652468:+ chr17:33650167:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Zinc_finger__C2H2_type(25%)| zf-C2H2(8%)| 1 3 4 18 37 ENST00000430262.3 ENST00000662865.2 upstream upstream mismatches(2) CGGGCCACAAAGGAGCCCAAAGCACCAGTCCAGAAAGCTAAGTGTGAAGAGAAAGAGACTCTGACCTGTGAGAAGTGCCCCAGGGTATTTAACACTCGCTGGTACCTGGAGAAGCACATGAACGTTACTCATAGGCGCATGCAGATTTGTGATAAATGTGGCAAGAAGTTTGTCCTGGAAAGTGAGCTGTCCCTTCACCAGCAAACAGACTGTGAAAAAAACATTCAG|GAGGAAGCACTCAATTGAACAAGTGCAGGAACCAGCTGGCTGCCTCAGCACTGACAGAAGCAAATTCCATTTGCTTGGACCCACTGCATTCCATCCCTTGTGGAAGAGAGCATGTAAGCAAGTGAGTGCAGGAACTGGCTGGCTGCTTTGGTGCTGGCAGGAGCAAAC...___GACAGGACCTTCAGGCCTCTGAAAAAAAAAGGATCAAAGAACTGAAACTCACCAGATCACCTCACCAGATGCTGGACCCCTCATTCACCATGTTTGCTTCCTTGCCTCTCCCTAGTTCTTATTTTCTTAtACATTGTTACATTTCTTCCCTGCTATATCAgCC RATKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQ|eealn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5268 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 903 TRUE 331 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49317366:- chr17:47366568-47439835:- chr17:47394728:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35321735:+ chr17:33640461-33652468:+ chr17:33648754:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 1 3 66 12 ENST00000508237.5 ENST00000664469.1 upstream upstream none CTTGTCAGGAGCTGGTTGAAAACTGTGCTGTGCATGTAGCAGGAATGGCACAAGAAGATAGCCGTCGTGGTCAAGTGCCATCTTCCTTTTATaATGGTGCC...GTGGACACCAAGATGAGCAAACCGCATCTCCATGAAACAGAAGAACAGCCATATTTCAGGGAGACAAGAGCAGTGTCTGACGTGCATGCTGTTAAGGAAGACCGGGAGAATTCTGATGACACAGAGGAGGAAGAGGAAGAAGTCTCTTACAAAAGGGAGCAGATCATAGTGGAG|AGACAATCAAGCTTTCGATGATCATGTGATGAGGTTTCCAGTCAGTTCCAGGTGAAGACACCACTGGCCATCAAGAAGCTACCCTCTCCCCACCAG VDTKMSKPHLHETEEQPYFRETRAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVE|rqssfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5269 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 903 TRUE 331 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49317366:- chr17:47366568-47439835:- chr17:47394728:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35323148:+ chr17:33640461-33652468:+ chr17:33650167:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 2 1 66 37 ENST00000508237.5 ENST00000659130.3 upstream upstream mismatches(1) GGGCCACTTACCAATGAGCCACACAGCCAGTTCTTGTCAGGAGCTGGTTGAAAACTGTGCTGTGCATGTAGCAGGAATGGCACAAGAAGATAGCCGTCGTG...CCGCATCTCCATGAAACAGAAGAACAGCCATATTTCAGGGAGACAAGAGCAGTGTCTGACGTGCATGCTGTTAAGGAAGACCGGGAGAATTCTGATGACACAGAGGAGGAAGAGGAAGAAGTCTCTTACAAAAGGGAGCAGATCATAGTGGAG|GAGGAAGCACTCAATTGAACAAGTGCAGGAACCAGCTGGCTGCCTCAaCACTGACcGAAGCAAATTCCATTTGCTTGGACCCACTGCATTCCATCCCTTGTGGAAGAGAGCATGTAAGCAA___GACAGGACC...TCACCAGATGCTGGACCCCTCATTCACCATGTTTGCTTCCTTGCCTCTCCCTAGTTCTTATTTTCTTACACATTGTTACATTTCTTCCCTGCTATATCAAC PHLHETEEQPYFRETRAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVE|eealn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5270 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 903 TRUE 331 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49361909:- chr17:47366568-47439835:- chr17:47439271:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35323148:+ chr17:33640461-33652468:+ chr17:33650167:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 10 37 ENST00000430262.3 ENST00000662865.2 upstream upstream none CGCCGCGGCTGCAGGCCCCCGCCGCAGGGATGGACCGCCGAGGCGGCGGCCGGGGCGGCGGAGGCGGAGGCGGCCGGCCCGG|GAGGAAGCACTCAATTG...CACCAGATGCTGGACCCCTCATTCACCATGTTTGCTTCCTTGCCTCTCCCTAGTTCTTATTTTCTTACACATTGTTACATTTCTTCCCTGCTATATCAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5271 NCK2::TMEM131 ENSG00000071051.14::ENSG00000075568.17 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 484 FALSE NA FALSE NA NCK2 ENSG00000071051.14 protein_coding + + chr2:105744912-105894274:+ chr2:105816613:+ chr2:106361369-106510730:+ chr2:106433070:+ TMEM131 ENSG00000075568.17 protein_coding - - chr2:97756333-97995948:- chr2:97888120:- chr2:98372796-98612411:- chr2:98504583:- chr2:105834882,chr2:105834881 chr2:97894313,chr2:97894314 NA NA chr2:106451338,chr2:106451337 chr2:98510776,chr2:98510777 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Transmembrane_protein_131-like_N-terminal(100%) |TMEM131_like(100%),TMEM131_like_N(100%) 2 4 4 135 68 ENST00000233154.9 ENST00000186436.10 downstream downstream duplicates(1),mismatches(2) CTGCTGAGATTTGAGTTGGATTTGAGGATTTGGAGAATCCCTGCAGCTTTGTAACTTCAGAGGTGTAATTAGCTGAAAACATCATCGTTTTGAAGAGTTCTGCGTTTTGCCAGTCACCTCTCAACTGTGTGCCAAAG|TATATCTCTCTACCGGGGGAATTGCAGGCCCATACGATTTGAGCCACCAATGCTGGATTTCCATGAACA___ACCAGTTGGAATGCCAAAAATGGAAAAAGTCTACTTACATAATCCTAGTTCTGAAGAAACGATTACTTTAGTATCAATATCTGCTACAACATCACATTTTCATGCATCATTTTTTCAAAATAGG___AAAATTCTTCCAGGAGGAA...TAGGAAATGTAGAAAATACTTTATTTATTAATACATCTAATCATGGGGTATTTACTTACCAG___GTATTTGGTGTTGGAGTTCCAAATCCATATCGATTGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5274 ZNF562::PIP5K1C ENSG00000171466.10::ENSG00000186111.11 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 486 TRUE 905 TRUE 332 ZNF562 ENSG00000171466.10 protein_coding - - chr19:9641807-9675100:- chr19:9656547:- chr19:9752483-9785776:- chr19:9767223:- PIP5K1C ENSG00000186111.11 protein_coding - - chr19:3630183-3700468:- chr19:3647386:- chr19:3630181-3700466:- chr19:3647384:- chr19:9655119 chr19:3650025 NA NA chr19:9765795 chr19:3650023 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none KRAB_box(100%)|Phosphatidylinositol-4-phosphate_5-Kinase(13%) KRAB(100%)|PIP5K(13%) 1 0 6 28 32 ENST00000453372.7 ENST00000335312.8 upstream downstream mismatches(2) ACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG___ATTTCTTTTTCTGCTTAACTTCAGAATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCACTGGGATACAAATG|GTTCATCAAGAAACTGGAGCACACCTGGAAGGCCCTCGTCCACGATGGG___GACACGGTGTCCGTCCACCGCCCCAGCTTCTATGCCGAGCGCTTTTTCAAGTTCATGAGCAACACGGTCTTTCGGAAGAACTCC LDTTQKYLYRDVMLENYMNLASVDFFFCLTSEWEIQPRTKRSSLQQGFLKNQIFTGIQM|vhqetgahlegprprwghgvrpppqllcralfqvheqhglseel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5275 ZNF562::PIP5K1C ENSG00000171466.10::ENSG00000186111.11 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 905 TRUE 332 ZNF562 ENSG00000171466.10 protein_coding - - chr19:9641807-9675100:- chr19:9658009:- chr19:9752483-9785776:- chr19:9768685:- PIP5K1C ENSG00000186111.11 protein_coding - - chr19:3630183-3700468:- chr19:3648708:- chr19:3630181-3700466:- chr19:3648706:- chr19:9655119 chr19:3650025 NA NA chr19:9765795 chr19:3650023 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none KRAB_box(98%)|Phosphatidylinositol-4-phosphate_5-Kinase(23%) KRAB(8%)|PIP5K(25%) 1 0 2 50 34 ENST00000453372.7 ENST00000335312.8 upstream downstream mismatches(2) TGATGATGTGGCTGTGGAGTTCACCCCAGAGGAGTGGGCTTTACTGGACACAACTCAGAAATACCTCTACAGAGATGTGATGCTGGAGAACTACATGAACCTGGCCTCTGTGG|GATGGGCGGGATCCCCGCTGTGAACGGCCGCGGGGAGCGGCTGCTGCTGCACATTGGCATCATCG DDVAVEFTPEEWALLDTTQKYLYRDVMLENYMNLASV|gwagspl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5276 ZNF562::PIP5K1C ENSG00000171466.10::ENSG00000186111.11 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 905 TRUE 332 ZNF562 ENSG00000171466.10 protein_coding - - chr19:9641807-9675100:- chr19:9675015:- chr19:9752483-9785776:- chr19:9785691:- PIP5K1C ENSG00000186111.11 protein_coding - - chr19:3630183-3700468:- chr19:3648708:- chr19:3630181-3700466:- chr19:3648706:- chr19:9655119 chr19:3650025 NA NA chr19:9765795 chr19:3650023 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Phosphatidylinositol-4-phosphate_5-Kinase(23%) |PIP5K(25%) 0 2 0 39 34 ENST00000453372.7 ENST00000335312.8 upstream downstream none TTAACCTTTATTGTGGTGGAGTCCACCCCGCTGTG|GATGGGCGGGATCCCCGCTGTGAACGGCCGCGGGGAGCGGCTGCTGCTGCACATTGGCATCATCGACATCCTGCAGTCCTACAG___GTTCATCAAGAAACTGGAGCACACCTGGAAGGCCCTCGTCCACGATGGG___GACACGGTGTCCGTCCA...TTCGGAAGAACTCCT___CCCTGAAGTCCTCGCCCTCCAAGAAGGGGCGCGGCGGAGCCTTGCTAGCTGTGAAACCGCTGGGGCCCACCGCTGCCTTCTCGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5278 PRKCE::ENSG00000232153 ENSG00000171132.14::ENSG00000232153.3 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 906 TRUE 333 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ ENSG00000232153 ENSG00000232153.3 lncRNA - - chr2:34732287-34822726:- chr2:34735107:- chr2:34957354-35047793:- chr2:34960174:- chr2:45710962,chr2:45710957 chr2:34754408,chr2:34754415 NA NA chr2:45938101,chr2:45938096 chr2:34979475,chr2:34979482 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none C2_domain(100%)| C2(0%)| 2 3 1 39 14 ENST00000306156.8 ENST00000664906.1 downstream downstream none CTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAGACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCA...CTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCGCCACTTCGAGGACTGG|CATTCACCAGGGCTTAGAAGACCCTGTGGCACCTGAAAGTGAATGTGCAATTGGATTGGAGTTATGCTGCAACAATTAGCTGCTCAATTGTGTGTTTATTACATATACCAAGATCACTTAAATAACACTACAG___GTCTTCCTCAATGGTGATTTTTATTCTGATGGAGAAGACATGCCTGAAGTGTATTGAGCAGAAGAGTGAC FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW|hspglrrpcgt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5279 PRKCE::ENSG00000232153 ENSG00000171132.14::ENSG00000232153.3 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 906 TRUE 333 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45701491:+ chr2:45878484-46415129:+ chr2:45928630:+ ENSG00000232153 ENSG00000232153.3 lncRNA - - chr2:34732287-34822726:- chr2:34735107:- chr2:34957354-35047793:- chr2:34960174:- chr2:45710962,chr2:45710957 chr2:34754408,chr2:34754415 NA NA chr2:45938101,chr2:45938096 chr2:34979475,chr2:34979482 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none C2_domain(100%)| C2(25%)| 2 1 1 4 14 ENST00000467135.5 ENST00000664906.1 downstream downstream duplicates(1) CGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCA...GGATCATCTAGGAAATGAAACTAAACTTGGCTTCGACCTAGACCTTGTGTGACCTTGAGGTCATCACCCTCTCACAG___TCACCCTAGAGAATCCTTTACTTA...GCTCCCATCAGTTACCCTATGATGAGGTCTCCAGCCCTTTCATCAGAAGACAGAGCTTTAAAATGCAG|CATTCACCAGGGCTTAGAAGACCCTGTGGCACCTGAAAGTGAATGTGCAATTGGATTGGAGTTATGCTGCAACAATTAGCTGCTC...TATACCAAGATCACTTAAATAACACTACAG___GTCTTCCTCAATGGTGATTTTTATTCTGATGGAGAAGACATGCCTGAAGTGTATTGAGCAGAAGAGTGAC...TCAACAATTTATAAATGAAGAGTCTGCTAGTCAGTGATAAGCAAAGGACTCTGTGTGGGAACTGGAGGGAAGAAAGACCCTCAATCATGTTCTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5280 PRKCE::ENSG00000232153 ENSG00000171132.14::ENSG00000232153.3 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 906 TRUE 333 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45677916:+ chr2:45878484-46415129:+ chr2:45905055:+ ENSG00000232153 ENSG00000232153.3 lncRNA - - chr2:34732287-34822726:- chr2:34735107:- chr2:34957354-35047793:- chr2:34960174:- chr2:45710962,chr2:45710957 chr2:34754408,chr2:34754415 NA NA chr2:45938101,chr2:45938096 chr2:34979475,chr2:34979482 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none C2_domain(100%)| C2(13%)| 0 1 1 4 14 ENST00000476675.5 ENST00000664906.1 downstream downstream none GGCCAGGACACCACGGAAGTTCTGAAGGGGTAGTGGGAACCG|CATTCACCAGGGCTTAGAAGACCCTGTGGCACCTGAAAGTGAATGTGCAATTGGATTGGAGTTATGCTGCAACAAT...TATACCAAGATCACTTAAATAACACTACAG___GTCTTCCTCAATGGTGATTTTTATTCTGATGGAGAAGACATGCCTGAAGTGTATTGAGCAGAAGAGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5283 ENSG00000248515::KANSL1 ENSG00000248515.2::ENSG00000120071.15 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 487 FALSE NA FALSE NA ENSG00000248515 ENSG00000248515.2 lncRNA + + chr4:19455418-19938448:+ chr4:19455652:+ chr4:19457041-19940071:+ chr4:19457275:+ KANSL1 ENSG00000120071.15 protein_coding - - chr17:46029916-46225389:- chr17:46094701:- chr17:44107282-44302755:- chr17:44172067:- chr4:19524272,chr4:19524273 chr17:46138120,chr17:46138120 NA NA chr4:19525895,chr4:19525896 chr17:44215486,chr17:44215486 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |PEHE_domain(100%) |PEHE(100%) 0 1 4 14 80 ENST00000511431.1 ENST00000574590.6 downstream downstream none TTTCAATGTTGCTTGCTCGGAATGGCCCTCCTGAGCAAACAACAGACGGTGCTCAAAGTAACAACTGGACTTAATAAAAGGAGCTTACACGAAGGAGGAGCTGAAGGCTGCTGTGGTCGTGTGCTGGGGGCTGCCCCAGCTCCAGCTGCAGGACCCCGGCCGTCTGCCTTCCGACTCCGGTGATGATTCTTCCTGCGGTCTG|GAGACGCAGGTCAGAATGGAAA...CAGACATTTACAAACAGATACGTGCTAATAAG___GGGTTGATAGTTCTTGGGGAGGTACCTCCCCCAGAGCATACAACAGACTTATTTCTTCCACTTAGTTCT...TCATATTTCAGAGTCACTGTCTACCAAATCATGTGGAGCACTCAGACCTGTCAATGGAGTTATTAACAC___TCTTCAGCCTGTCTTGGCAGACCACATTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5284 SLC44A1::LINC01505 ENSG00000070214.17::ENSG00000234323.10 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105335699:+ chr9:108006903-108201452:+ chr9:108097980:+ LINC01505 ENSG00000234323.10 lncRNA + + chr9:105993310-106740875:+ chr9:106153673:+ chr9:108755591-109503156:+ chr9:108915954:+ chr9:105339519,chr9:105339518 chr9:106077971,chr9:106077967 NA NA chr9:108101800,chr9:108101799 chr9:108840252,chr9:108840248 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none none none 1 2 1 190 7 ENST00000374724.1 unknown downstream upstream none GTTGGAAGCAATACCAAACAGTGGCATGGACCACACCCAGCGGAA___GTATGTATTCTTTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGTGATGTTCAGAAGTTTGCAGAGATAAATG|TGCCCTGTCTGTAGTAACCCTGGCTGGGGCTGCTGTGGATTCATCAATGGTGCTTCGACGAAGCTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCTCATGTTGTCATTCATAGGTGGGAACTGAACAATGAGAACACCTGGACACAGGAAGGGGAACACCACACAGCGG LEAIPNSGMDHTQRKYVFFLDPCNLDLINRKIKSVALCVAACPRQELKTLSDVQKFAEIN|vpcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-8081 chr9:106600928-106601022:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5285 ENSG00000266049::MYOM1 ENSG00000266049.1::ENSG00000101605.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000266049 ENSG00000266049.1 lncRNA - - chr18:2688564-2833065:- chr18:2832616:- chr18:2688562-2833063:- chr18:2832614:- MYOM1 ENSG00000101605.14 protein_coding - - chr18:3066807-3219968:- chr18:3164439:- chr18:3066805-3219966:- chr18:3164437:- chr18:2774573,chr18:2774905,chr18:2774908 chr18:3168453,chr18:3168525,chr18:3168525 NA NA chr18:2774571,chr18:2774903,chr18:2774906 chr18:3168451,chr18:3168523,chr18:3168523 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(67%) |I-set(45%),Ig_2(43%),Ig_3(42%),fn3(100%),ig(100%) 1 1 2 22 24 ENST00000583546.1 ENST00000356443.9 upstream downstream none GGCAGATCCACCCTTAATCTGGTGGGCACAATCTAATCAGCTGCTGGCAATTAAAGCACGCTGAAAAACGTGAAAAGGAGAGACAGGCCCAGCCTCCCAGCCTACATCTTCCTCCTGTCCTGGATGCTTCCTGGCCTCGAACATCGGACTCCAAGTCCTTCAATTTTGAGACTCAGACTGGCTC...CTCAGCTTGCAGACAGCCTACTGTGAGACCTTGTGATCAT|GAGTACCTCTTTCTCCATCAAAATGGGTGCAAACACTTTGGAGTGGAGAGCGGGCAACGCTGACATTTTCCCATCTCAACAAAGAAGATGAAGGCCTCTATACAATCCGTGTACGGATGGGAGAATATTATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5286 SBF2::AMPD3 ENSG00000133812.18::ENSG00000133805.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SBF2 ENSG00000133812.18 protein_coding - - chr11:9776776-10304877:- chr11:10193902:- chr11:9798323-10326424:- chr11:10215449:- AMPD3 ENSG00000133805.16 protein_coding + - chr11:10308313-10507579:+ chr11:10457344:- chr11:10329860-10529126:+ chr11:10478891:- chr11:10139990,chr11:10139993 chr11:10460737,chr11:10460737 NA NA chr11:10161537,chr11:10161540 chr11:10482284,chr11:10482284 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none uDENN_domain(36%)| uDENN(0%)| 1 3 0 34 6 ENST00000692716.1 unknown upstream downstream duplicates(1),mismatches(1) TCAGGAGAAGGTCTGGGGAAAATAATCCAGAGATTTCCACAGAAGGACTGGGATGATACACCTTTTCCACAGGGAATTGAGTTG|AACCCATAAAAATCTTCCGCAGAACTACTACCAGTGTCTTAAATAGTTGGTAGATAATTCATTCCAAGACCGGGTGCAGTGGCTCATGCCTATAATCCAAGCAATTTGGGAGGCTGAAGAGGATCGCTTGAGGCCAGGAGTTCGAGATCAGCCTGGTGCAATATGTCAGAACCTCATCTCTACAAAAAATAGAAAAAAAAACAGCCAGGTGTGGTGGCATGCACCTGTGGTCTCAGCTATTTGGAAGGCTGAGTTGGGAGAATTGC SGEGLGKIIQRFPQKDWDDTPFPQGIEL|np* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5287 LINC02742::ENSG00000254526 ENSG00000249867.6::ENSG00000254526.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02742 ENSG00000249867.6 lncRNA + + chr11:28702607-29064322:+ chr11:28761084:+ chr11:28724154-29085869:+ chr11:28782631:+ ENSG00000254526 ENSG00000254526.1 lncRNA + + chr11:29159956-29266734:+ chr11:29211655:+ chr11:29181503-29288281:+ chr11:29233202:+ chr11:29000249,chr11:29000247,chr11:29000246 chr11:29192697,chr11:29192695,chr11:29192699 NA NA chr11:29021796,chr11:29021794,chr11:29021793 chr11:29214244,chr11:29214242,chr11:29214246 NA NA sense sense unknown intron exon/splice-site deletion high none none none 1 2 1 33 14 unknown ENST00000530960.1 downstream upstream none GGAAAAGCAAAACAGATAATGCTCATGAAGCTTAATAAAAGCCTAGTCCTCTCTCTCCTACTTCTCTCCTGCTGGTTGAGAACGCTTGCTATCTCTGCGCTTCCTGTTGGCTGTTGTGAACATCCTTTTTTCTTGTGGATTT|GCACTTCATCACCAAAGCAACAAGATGTGGAGCATGAGCAGTTCAACCTTTGAAGATAACTCAGACTAATTTGGCCAGCCTCTCCGTCTGAGGGTCTGAGATCATAAGAAG___GGTTTAGAGAAGTTACAGGCCATTTTAATGCTTGATAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5288 ESYT1::PMEL ENSG00000139641.13::ENSG00000185664.15 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ESYT1 ENSG00000139641.13 protein_coding + + chr12:56118250-56144674:+ chr12:56131316:+ chr12:56512034-56538458:+ chr12:56525100:+ PMEL ENSG00000185664.15 protein_coding - + chr12:55954105-55973317:- chr12:55957632:+ chr12:56347889-56367101:- chr12:56351416:+ chr12:56131490,chr12:56131487 chr12:55954006,chr12:55954000 NA NA chr12:56525274,chr12:56525271 chr12:56347790,chr12:56347784 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Synaptotagmin-like_mitochondrial-lipid-binding_domain(58%)| SMP_LBD(42%),zf-CCCH(100%),zf-CCCH_2(100%)| 1 1 2 316 27 ENST00000394048.10 unknown downstream upstream none GTCAAGGTTCACCCAGGTCAGAGAAAAGAGCAGATCCTGCTGGACTTGAACATCAG___CTATGTAGGTGATGTGCAGATTGATGTGGAAGTGAAGAAATATTTTTGCAAAGCAGGAGTCAAGGGCATGCAG|GCCCGCAACTGGGACACGCTCACGGAGAAAGGCACCTGGTCTGGGATTGGAGCCAGAAAAG___...GCAGTGAGGAGGATGGATTAGAGGCTGGCAGAGATTGGGGATGGG...___AGTCTTGCTGTTGCCCAGGCTGGAATGCAATGGTGTGATCTCGGCTCACTGCAACCTCTG VKVHPGQRKEQILLDLNISYVGDVQIDVEVKKYFCKAGVKGMQ|arnwdtltekgtwsgigark NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5289 CCDC7::C9orf85 ENSG00000216937.14::ENSG00000155621.15 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32686080:+ chr10:32735068-33171802:+ chr10:32975008:+ C9orf85 ENSG00000155621.15 protein_coding + + chr9:71911510-71986054:+ chr9:71982657:+ chr9:74526426-74600970:+ chr9:74597573:+ chr10:32687010,chr10:32687006 chr9:71976644,chr9:71976637 NA NA chr10:32975938,chr10:32975934 chr9:74591560,chr9:74591553 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none Spermatogenesis_family_BioT2(100%)| BioT2(100%)| 0 2 1 49 35 ENST00000375025.10 ENST00000377031.7 downstream upstream mismappers(4) GAAGAACAAACTTACCAAGCAGCAGAAAAATCTCAAG___CTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAgTAAAGAAACAAGAAACTTCTACAGAGCAACCACTCACCA|ATGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCAGGATCTTGGCTCACCACAACCTCCGCCTCCCTTGTTCAAGTGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAGGCGCACACCACCATGCCCAGCTAATCTTTGTATTTTT...GGTCTCGAACTCCTGACCTCATGATCTGCCTGCCTCAACCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCATCATGCCTGGCCTAATTTGTATATTTCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5292 SP1::RARG ENSG00000185591.10::ENSG00000172819.17 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SP1 ENSG00000185591.10 protein_coding + + chr12:53380176-53416446:+ chr12:53409561:+ chr12:53773960-53810230:+ chr12:53803345:+ RARG ENSG00000172819.17 protein_coding - + chr12:53210567-53232980:- chr12:53213427:+ chr12:53604351-53626764:- chr12:53607211:+ chr12:53410756,chr12:53410756 chr12:53213070,chr12:53213067 NA NA chr12:53804540,chr12:53804540 chr12:53606854,chr12:53606851 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Zinc_finger__C2H2_type(68%)| zf-C2H2(76%),zf-C2H2_6(100%)| 2 0 1 240 6 ENST00000327443.9 unknown downstream upstream duplicates(1) GGGGGACAGGCCCTCCAGGCCCTCCAAGCAGCACCATTGTCAGGGCAGACCTTTACAAtTCAAGCCATCTCCCAGGAAACCCTCCAGAACCTCCAGCTTCA...CCAATTCAAGGCCTGCCGTTGGCTATAGCAAATGCCCCAG___GTGATCATGGAGCTCAGCTTGGTCTCCATGGGGCTGGTGGTGATGGAATACATGATGACAC...GCtCCTGCCCCTACTGTAAAGACAGTGAAGGAAG___GGGCTCGGGGGATCCTGGCAAAAAGAAACAGCATATTTGCCACATCCAAGGCTGTGGGAAAGTGTA...CTTCACACGTTCGGATGAGCTACAGAGGCACAAACGTACACACACAG|ACAGATTCCGCATGGAGTGGTGGGAAAGGAGACTGAGCACTGAGCAGACGCCAGGGGGCGCCCCCGCACCTCCGCAG FTRSDELQRHKRTHT|drfrmewwerrlsteqtpggapapp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5296 NUMB::COL4A1 ENSG00000133961.21::ENSG00000187498.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 488 FALSE NA FALSE NA NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73458493:- chr14:73741815-73925323:- chr14:73925199:- COL4A1 ENSG00000187498.16 protein_coding - - chr13:110148963-110307157:- chr13:110242734:- chr13:110801310-110959504:- chr13:110895081:- chr14:73310637,chr14:73310639 chr13:110259143,chr13:110259142 NA NA chr14:73777345,chr14:73777347 chr13:110911490,chr13:110911489 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |C-terminal_tandem_repeated_domain_in_type_4_procollagen(100%),Collagen_triple_helix_repeat_(20_copies)(100%) |C4(100%),Collagen(100%) 0 24 0 166 465 ENST00000554546.5 ENST00000375820.10 upstream downstream mismatches(2) GTGGCCACTGGCGGCCGAGGTAGAGGCAGTGGCGCTTGAGTTGGTCGGGGGCAGCGGCAG|GGTGGCTGTGCTGGCTCTGGCTGTGGCAAATGTGACTGCCATGGAGTGAAGGGACAAAAG___GGTGAAAGAGGCCTCCCGGGGTTACAAGGTGTCATTGGGTTTCCTGGAATGCAAGGACCTGAGGGGCCACAGGGACCACCAGGACAAAAG___GGTGATACTGGAGAACCAGGACTACCTGGAACAAAAGGGACAAGA___GGACCTCCGGGAGCATCTGGCTACCCTGGAAACCCAGGACTTCCC___GGAATTCCTGGCCAAGACGGCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5297 CDKN2A::MTAP ENSG00000147889.18::ENSG00000099810.21 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- MTAP ENSG00000099810.21 protein_coding + - chr9:21802636-21937651:+ chr9:21904258:- chr9:21802635-21937650:+ chr9:21904257:- chr9:21992770 chr9:21908434 NA NA chr9:21992769 chr9:21908433 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Cyclin-dependent_kinase_inhibitor_2a_p19Arf_N-terminus(100%)| P19Arf_N(100%)| 1 5 5 14 13 ENST00000530628.2 unknown upstream downstream duplicates(1),mismatches(2) CGCTGCTCACCTCTGGTGCCAAAGGGCGGCGCAGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCtCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|GCAGATACACAGGCGGCTGAACGTGGAGAGGACCACATCAGCAGAGGAACACACAGGCAGCTGGATGTTGAGAGGAGCACATCAGCAGGCACCAGCACACTGGCAGGCCACTGACCAGCAGAACGCCTTGGAGTTTGGCCAGGGCAGTCGGAGGACAGCCCAGGCCGCCCAGGCTGCCGAGTGGCCTGACCCAAGGGGAAAACCATTCTCCTTTCTGGCTCCCCCATCTGC MVRRFLVTLRIRRACGPPRVRVFVVHIsRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|grytgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 5311 GNAL::CALR4P ENSG00000141404.17::ENSG00000227742.2 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNAL ENSG00000141404.17 protein_coding + + chr18:11689264-11885685:+ chr18:11876688:+ chr18:11689263-11885684:+ chr18:11876687:+ CALR4P ENSG00000227742.2 transcribed_unitary_pseudogene - + chr1:51561866-51594897:- chr1:51579077:+ chr1:52027538-52060569:- chr1:52044749:+ chr18:11877132,chr18:11877132 chr1:51578209,chr1:51578206 NA NA chr18:11877131,chr18:11877131 chr1:52043881,chr1:52043878 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none G-protein_alpha_subunit(90%)| Arf(100%),G-alpha(97%),Snf7(100%)| 0 2 0 8 2 ENST00000334049.11 unknown downstream upstream none ATTTCTACAGCAACACCAGATGCAGGAGAAGATCCCAAAGTTACAAGAGCCAAGTTCTTTATCCGGGACCTGTTTTTG|ATGGATTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTCCAATTTCAGCTCACTGCAGCCTCTTCAGCAGAATCTTG...GTTTTTTCATCTGTAGAAATGGGGACCTAAGGTACAGAGTTTCTTCTGGGAGAATTAAGTGAAACTGCATGCAACACCATGTTAGGCACACTAGAAGTGAT istATPDAGEDPKVTRAKFFIRDLFL|mdshsvaqagvqwsnfsslqplqqnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5312 GNAL::OSBPL9 ENSG00000141404.17::ENSG00000117859.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNAL ENSG00000141404.17 protein_coding + + chr18:11689264-11885685:+ chr18:11876688:+ chr18:11689263-11885684:+ chr18:11876687:+ OSBPL9 ENSG00000117859.19 protein_coding + + chr1:51577179-51798427:+ chr1:51579077:+ chr1:52042851-52264099:+ chr1:52044749:+ chr18:11877132,chr18:11877132 chr1:51578209,chr1:51578206 NA NA chr18:11877131,chr18:11877131 chr1:52043881,chr1:52043878 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none G-protein_alpha_subunit(90%)|Oxysterol-binding_protein_(100%),PH_domain(100%) Arf(100%),G-alpha(97%),Snf7(100%)|Oxysterol_BP(100%),PH(100%),PH_8(100%),Peptidase_M16_C(100%) 0 2 0 8 2 ENST00000334049.11 unknown downstream upstream none ATTTCTACAGCAACACCAGATGCAGGAGAAGATCCCAAAGTTACAAGAGCCAAGTTCTTTATCCGGGACCTGTTTTTG|ATGGATTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTCCAATTTCAGCTCACTGCAGCCTCTTCAGCAGAATCTTG...GTTTTTTCATCTGTAGAAATGGGGACCTAAGGTACAGAGTTTCTTCTGGGAGAATTAAGTGAAACTGCATGCAACACCATGTTAGGCACACTAGAAGTGAT istATPDAGEDPKVTRAKFFIRDLFL|mdshsvaqagvqwsnfsslqplqqnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5337 SLC25A44::DAP3 ENSG00000160785.14::ENSG00000132676.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 917 TRUE 334 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155709773:+ chr1:155657751-155708801:+ chr1:155679564:+ chr1:156198664,chr1:156198664,chr1:156198661 chr1:155698038,chr1:155698039,chr1:155698032 NA NA chr1:156168455,chr1:156168455,chr1:156168452 chr1:155667829,chr1:155667830,chr1:155667823 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Mitochondrial_ribosomal_death-associated_protein_3(100%) |DAP3(100%) 38 117 109 408 1068 ENST00000684582.1 ENST00000368336.10 downstream upstream duplicates(78),mismatches(27) AGTCGAGATGGAGGAAGATGCGACCGGCAGACGGCATTCGCTGGGAACGACGGATAGACTGGGGGCTGCGGCCTAGAGGTCCGGGCTTGGAGTTCGCCTCAGACGCGGTGGAGCCGCCGGAGTCTGAGAAG|TGCAAGGATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAG___TTGGACCCTGGGCGTTTTTTACACATGGGGACCCAGGCTCGCCAAAGCATTGCTGCTCACCTAGATAACCAGGTTCCAGTTGAGAGTCCGAGAGCTATTTCCCGCACCAATGAGAATGACCCG___GCCAAGCATGGGGATCAGCACGAGGGTCAGCACTACAACATCTCCCCCCAGGATTTGGAGACTGTATTTCCCCATGGCCTTCCTCCTCGCTTTGTGATGCAG___GTGAAGACATTCAGTGAAGCTTGCCTGATGGTAAGGAAACCAGCCCTAGAACTTCT MRPADGIRWERRIDWGLRPRGPGLEFASDAVEPPESEK|ckddaernnkayl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5338 SLC25A44::DAP3 ENSG00000160785.14::ENSG00000132676.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 917 TRUE 334 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155709033:+ chr1:155657751-155708801:+ chr1:155678824:+ chr1:156198664,chr1:156198664,chr1:156198661 chr1:155698038,chr1:155698039,chr1:155698032 NA NA chr1:156168455,chr1:156168455,chr1:156168452 chr1:155667829,chr1:155667830,chr1:155667823 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Mitochondrial_ribosomal_death-associated_protein_3(100%) |DAP3(100%) 0 10 110 408 103 ENST00000684582.1 ENST00000471214.5 downstream upstream duplicates(33),mismappers(3),mismatches(15) AGCCCAGTCGAGATGGAGGAAGATGCGACCGGCAGACGGCATTCGCTGGGAACGACGGATAGACTGGGGGCTGCGGCCTAGAGGTCCGGGCTTGGAGTTCGCCTCAGACGCGGTGGAGCCGCCGGAGTCTGAGAAG|AGATGAAGTTTTACCATGTTGGCCAGGCTGGTCTCGAATTCCTGACCTCAAGTGATCTGCCCACCTTGACCTCCCAAAGTGCTGGGATTACAG___TGCAAGGATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAG___TTGGACCCTGGGCGTTTTTTACACATGGG...AAAGCATTGCTGCTCACCTAGATAACCAG...___GCCAAGCATGGGGATCAGCAC MRPADGIRWERRIDWGLRPRGPGLEFASDAVEPPESEK|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5339 SLC25A44::DAP3 ENSG00000160785.14::ENSG00000132676.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 917 TRUE 334 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155717006:+ chr1:155657751-155708801:+ chr1:155686797:+ chr1:156198664,chr1:156198664,chr1:156198661 chr1:155698038,chr1:155698039,chr1:155698032 NA NA chr1:156168455,chr1:156168455,chr1:156168452 chr1:155667829,chr1:155667830,chr1:155667823 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Mitochondrial_ribosomal_death-associated_protein_3(100%) |DAP3(100%) 1 1 84 408 830 ENST00000684582.1 ENST00000368336.10 downstream upstream duplicates(21),mismatches(14) AGCCCAGTCGAGATGGAGGAAGATGCGACCGGCAGACGGCATTCGCTGGGAACGACGGATAGACTGGGGGCTGCGGCCTAGAGGTCCGGGCTTGGAGTTCGCCTCAGACGCGGTGGAGCCGCCGGAGTCTGAGAAG|TTGGACCCTGGGCGTTTTTTACACATGGGGACCCAGGCTCGCCAAAGCATTGCTGCTCACCTAGATAACCAGGTTCCAGTTGAGAGTCCGAGAGCTATTTCCCGCACCAATGAGAATGACCCG___GCCAAGCATGGGGATCAGCACGAGGGTCAGCACTACAACATCTCCCCCCAGGATTTGGAGACTGTATTTC MRPADGIRWERRIDWGLRPRGPGLEFASDAVEPPESEK|LDPGRFLHMGTQARQSIAAHLDNQVPVESPRAISRTNENDPAKHGDQHEGQHYNISPQDLETVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5340 MBP::LINC01899 ENSG00000197971.16::ENSG00000265352.1 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBP ENSG00000197971.16 protein_coding - - chr18:76978827-77133683:- chr18:77066298:- chr18:74690783-74845639:- chr18:74778254:- LINC01899 ENSG00000265352.1 lncRNA - - chr18:71732615-71788128:- chr18:71732847:- chr18:69399851-69455364:- chr18:69400083:- chr18:77049428,chr18:77049430 chr18:71733003,chr18:71733002 NA NA chr18:74761384,chr18:74761386 chr18:69400239,chr18:69400238 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 75 50 111 470 167 ENST00000355994.7 ENST00000583756.1 upstream downstream duplicates(100),mismatches(14) GAGAGAAGCAGCCTCCGGCCCCGGCGGCCCCTGTCTCCCGACCCCGGAAGGCGAAGCAGGCTGCCCGGGGACCCCGCGCGTGGGCGCTTGAAGCCGAGACCAGCCTGCCCGGGCCTGGGgAGGCGGAGCAGGGCCTTGGACCCCGCGGCGCCCCTCGGCCTCGGAGCAACGAGCGCAGCGCCG___CCTCTGAAGAGCCAATCCATTCAGGATGGGAAACCACGCAGGCAAACGAGAATTAAATGCCGAGAAGGCCAGTACG___AATAGTGAAACTAACAGAGGAGAATCTGAAAAAAAGAGAAACCTGGGTGAACTTTCACGGACAACCTCAGAGGACAACGAAGTGTTCG|AGGCTATTCCGTATACTTACTAGAATATATGAGTTTTACAAATTGGAATGATAGGCATTGATATTGACACATCTGGAGAAGGAGTGATCAAAGAGAAGTGGCCCTGGAGCTCTCCCCATGAAAAGATTAAATTTTTAAGAAGATGCTGCTCACCTAAAACTTATCAATAAAGTCAACTATAGTTTCCAATTGGT MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVF|eaipyty* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5342 ENSG00000262660::OGFOD3 ENSG00000262660.1::ENSG00000181396.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 918 FALSE NA ENSG00000262660 ENSG00000262660.1 protein_coding + + chr17:81703371-81720539:+ chr17:81707213:+ chr17:79670401-79687569:+ chr17:79674243:+ OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82404090:- chr17:80347086-80376513:- chr17:80361966:- chr17:81709209,chr17:81709218,chr17:81709226,chr17:81709227,chr17:81709162,chr17:81709170,chr17:81709176,chr17:81709174,chr17:81709194,chr17:81709183 chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146,chr17:82412146 NA NA chr17:79676239,chr17:79676248,chr17:79676256,chr17:79676257,chr17:79676192,chr17:79676200,chr17:79676206,chr17:79676204,chr17:79676224,chr17:79676213 chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022,chr17:80370022 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Ribosomal_protein_L7/L12_C-terminal_domain(81%),Ribosomal_protein_L7/L12_dimerisation_domain(100%)|2OG-Fe(II)_oxygenase_superfamily(100%) Ribosomal_L12(3%),Ribosomal_L12_N(100%)|2OG-FeII_Oxy_3(100%) 1 1 1 1630 938 ENST00000571730.1 ENST00000313056.10 downstream downstream none GGAAATCAAGAACTACATCCAAGGCATCAACCTCGTCCAG___GCAAAGAAGCTGGTGGAGTCCCTGCCCCAGGAAATCAAAGCCAATGTCGCCAAAGCTGAGGCGGAGAAGATCAAGGCGGCCCTGGAGGCG|GGAGGTGCGGCAGAAGGTCCAGCTCACCATTGCTGAGGCTTTTGGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCACGGAAGCGCGGACGGCGCACGACGAGTACTGGCATGCGCACGTGGACAAG___GTGACCTACGGC...AGAGCTG___GTCGCGTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACgGGGGCACCCGTTACGCCATCACCATCGCCTTCAG EIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEA|ggaaegpahhc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5343 PRPF31::ENSG00000275210 ENSG00000105618.14::ENSG00000275210.1 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRPF31 ENSG00000105618.14 protein_coding + + chr19:54115410-54131719:+ chr19:54124656:+ chr19:54618790-54635150:+ chr19:54628035:+ ENSG00000275210 ENSG00000275210.1 lncRNA - + chr19:54308915-54337168:- chr19:54331527:+ chr19:54820182-54848439:- chr19:54842799:+ chr19:54125201,chr19:54125200 chr19:54325786,chr19:54325782 NA NA chr19:54628580,chr19:54628579 chr19:54837058,chr19:54837054 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none snoRNA_binding_domain__fibrillarin(80%)| Nop(44%)| 40 23 20 3741 153 ENST00000419967.5 unknown downstream upstream duplicates(34),mismatches(10) CCCAGGG___GCAGCAGCTGTCGGAGGAGGAGCTGGAGCGGCTGG?GGAGGCCTGCGACATGGCGCTGGAGCTGAACGCCTCCAAGCACCGCATCTACGAGTATGTGGAGTCCCGGATGTCCTTCATCGCACCCAACCTGTCCATCATTATCGGGGCATCCACGGCCGCCAAGATCATGG___GTGTGGCCGGCGGCCTGACCAACCTCTCCAAGATGCCCGCCTGCAACATCATGCTGCTCGGGGCCCAGCGCAAGACGCTGTCGGGCTTCTCGTCTACCTCAGTGCTGCCCCACACCGGCTACATCTACCACAGTGACATCGTGCAGTCCCTGCCACCG|CCCAGAACAACTGTGCCCCCCAACCTGAGAGCCCAGGGGCTGGAGTAAGAGGGAGGCTCGTGGAGAACCTGGTAGCCCCTTCTCCCTCCATCACTGACTGAGGCAGAGAAGCACGAACACCGTGATGCCTGCTCTGGGGGCTCCAGCTGTGGGAGAGGAGACCACAGGGCCCTCCAGGACAGACAGACACACGGATGTGGTCACTCAGAGCCTGCTG QGQQLSEEELERL?EACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPP|prttvppnlraqgle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5344 FCHSD2::FAM168A ENSG00000137478.15::ENSG00000054965.11 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 919 TRUE 335 FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72887470:- chr11:72547790-72853363:- chr11:72598515:- FAM168A ENSG00000054965.11 protein_coding - - chr11:73400487-73598189:- chr11:73468492:- chr11:73111532-73309234:- chr11:73179537:- chr11:72880579,chr11:72880587 chr11:73503040,chr11:73503045 NA NA chr11:72591624,chr11:72591632 chr11:73214085,chr11:73214090 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)|Tongue_Cancer_Chemotherapy_Resistant_Protein_1(100%) FCH(100%)|TCRP1(100%) 17 32 23 148 190 ENST00000409418.9 ENST00000356467.5 upstream downstream duplicates(22),mismatches(4) GTCTAAATAAGGAAGCTCGAAAATGGGCCACACGTGTGGCACGTGAGCATAAAAACATTGTTCACCAACAACGG___GTTCTAAATGATCTGGAGTGTCATGGAGCTGCTGTATCAGAACAAAGCCGAGCAGAGCTAGAACAGAAAATAGATGAAGCTAGAGAAAATATTCGTAAAGCAGAG|GATCCTCAGTCTTCCACAATGAACCCTGTTTACAGCCCCGTGCAGCCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCTACACGG___GTTACCCCACAGCCTATCCAGCAGCTGCCCCTGCCTACAATCCCAGCCTGTACCCCACCAATAGTCCCAGTTATGCTCCAG___CAACTCTGCTGATGAAACAGGCCTGGCCACAGAACTCGTCTTCCTGTGGCACTGAAGGCACCTTCCACCTCCCAGTGGACACCGGGACCGAGAACCGAA LNKEARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRKAE|dpqsstMNPVYSPVQPGAPYGNPKNMAYTGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAWPQNSSSCGTEGTFHLPVDTGTENR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma UTERUS,BREAST,UTERUS,CERVIX no_match 72551922,72578910|72598515,72851076|72851076,72794740 FALSE,FALSE|TRUE,FALSE|FALSE,FALSE 73179537,73179537|73179537,73131044|73122581,73131044 TRUE,TRUE|TRUE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES CDS-5UTR,CDS-5UTR,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5345 FCHSD2::FAM168A ENSG00000137478.15::ENSG00000054965.11 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 919 TRUE 335 FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72902543:- chr11:72547790-72853363:- chr11:72613588:- FAM168A ENSG00000054965.11 protein_coding - - chr11:73400487-73598189:- chr11:73468492:- chr11:73111532-73309234:- chr11:73179537:- chr11:72880579,chr11:72880587 chr11:73503040,chr11:73503045 NA NA chr11:72591624,chr11:72591632 chr11:73214085,chr11:73214090 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication low none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)|Tongue_Cancer_Chemotherapy_Resistant_Protein_1(100%) FCH(100%)|TCRP1(100%) 0 1 0 245 190 ENST00000409418.9 ENST00000064778.8 upstream downstream none GCCTTGTGACAGTGATACT|GATCCTCAGTCTTCCACAATGAACCCTGTTTAgAGCCCCGTGCAGCCTGGGGCTCCTTATGGCAACCCTAAGAACATGGCCT...AGTTATGCTCCAG___AGTTTCAGTTCCTGCATTCAGCTTATG___CAACTCTGCTGATGAAACAGGCCTGGCCACAGAACTCGTCTTCCTGTGGCACTGAAGGCAC PCDSDT|dpqsstMNPV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma UTERUS,BREAST,UTERUS,CERVIX no_match 72551922,72578910|72598515,72851076|72851076,72794740 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 73179537,73179537|73179537,73131044|73122581,73131044 TRUE,TRUE|TRUE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES CDS-5UTR,CDS-5UTR,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5346 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 489 TRUE 920 TRUE 336 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60139087:- chr10:61786056-62493248:- chr10:61898845:- chr10:59877830,chr10:59877838 chr10:60141785,chr10:60141790 NA NA chr10:61637588,chr10:61637596 chr10:61901543,chr10:61901548 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterized_conserved_protein_H4_(DUF2046)(17%)|Death_domain(100%),UPA_domain(100%),ZU5_domain(100%) DUF2046(0%)|Death(100%),UPA_2(100%),ZU5(100%) 19 20 30 744 160 ENST00000263102.7 ENST00000373827.6 upstream downstream duplicates(23),mismappers(3),mismatches(1) CTCGCCGTTCCGCCTGGAGGAGCTCACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTGACCATC|GTGAAGATGCAATGACCGGGGACACAGACAAATATCTTGGGCCACAGGACCTTAAGGAATTGGGTGATGATTCCCTGCCTGCAGAGGGTTACATGGGCTTTAGTCTCGGAGCGCGTTCTGCCAG___CCTCCGCTCCTTCAGTTCGGATAGGTCTTACACCTTGAACAGAAGCTCCTATGCACGGGACAGCATGATGATTGAAGAACTCCTTGTGCCATCCAAAGAGC SPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|vkmq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5347 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 920 TRUE 336 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60114331:- chr10:61786056-62493248:- chr10:61874089:- chr10:59877830,chr10:59877838 chr10:60141785,chr10:60141790 NA NA chr10:61637588,chr10:61637596 chr10:61901543,chr10:61901548 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterized_conserved_protein_H4_(DUF2046)(17%)|Death_domain(100%),UPA_domain(100%),ZU5_domain(100%) DUF2046(0%)|Death(100%),UPA_2(100%),ZU5(100%) 1 1 7 744 284 ENST00000263102.7 ENST00000373827.6 upstream downstream duplicates(2) CGGGTCCCGGAGCTTTCAGCCAGCTTTGCTGGGCGGCCTAGGGAGCGCGCCCAGCCCGGCTGGAGCGAGCCCCAGTGCAATACTGCCCAAGCCCGGGCGGG...GTCGGGGGGCATTGTCATCTCGCCGTTCCGCCTGGAGGAGCTCACCAACCGCCTGGCCTCGCTGCAGCAAGAGAACAAGGTGCTGAAGATAGAGCTGGAGACCTACAAACTGAAGTGCAAGGCACTGCAGGAGGAGAACCGCGACCTGCGCAAAGCCAGCGTGACCATC|CATCTAACATTCACAAGGGAATTTGATTCAGATTCTCTTAGACATTACAGCTGGGCTGCAGACACCTTAGACAATGTCAATCTTGTTTCAAGCCCCATTCATTCTGG___GTTTCTGGTTAGCTTTATGGTGGACGCGAGAGGGGGCTCCATGAGAGGAAGCCG SGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTI|HLTFTREFDSDSLRHYSWAADTLDNVNLVSSPIHSGFLVSFMVDARGGSMRGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|FALSE|TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5350 CUX1::ALKBH4 ENSG00000257923.12::ENSG00000160993.4 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102170550:+ chr7:101459184-101927250:+ chr7:101813830:+ ALKBH4 ENSG00000160993.4 protein_coding - + chr7:102456238-102464863:- chr7:102459621:+ chr7:102096685-102105310:- chr7:102100068:+ chr7:102172963,chr7:102173260,chr7:102172963 chr7:102456522,chr7:102456521,chr7:102456519 NA NA chr7:101816243,chr7:101816540,chr7:101816243 chr7:102096969,chr7:102096968,chr7:102096966 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' high none none none 13 21 28 277 148 ENST00000437600.9 unknown downstream upstream duplicates(30),mismappers(4),mismatches(6) ATCATGACGGACCTTGAAAGGGCAAACCAG___AGGGCAGAGGTGGCTCAGAGAGAGGCGGAGACCTTAAGGGAACAGCTCTCATCGGCCAATCACTCCCTCCAGCTGGCCTCACAGATCCAGAAGGCACCAGACGTG|ACTGGGAGAGCTTCCAGGGGTCACGGTCCATGAGCCGCACCAACTCGGCTTCTTCCTCCCGGGTCACAAAGTCCTCGATCAGCATCACTCCTGGGAAGGGGAAGGCCCAGCCCTCAAAGTCAGACTCCTCTGTGCCCACGGCCCAGCCGGTGTCGGAGCAGTAAATGAAACG___GGTCTCACTATGTTGCCCAAGCTGGAGTGCAGTGGCGTGATCACAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGCAACCCTCCCACCTCAGCCTCCTGGGTAGCTGGGAC IMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDV|tgrasrghgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 5351 SVIL::MPP7 ENSG00000197321.16::ENSG00000150054.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 490 FALSE NA FALSE NA SVIL ENSG00000197321.16 protein_coding - - chr10:29457338-29736959:- chr10:29657969:- chr10:29746267-30025888:- chr10:29946898:- MPP7 ENSG00000150054.19 protein_coding - - chr10:28050993-28334486:- chr10:28089841:- chr10:28339922-28623415:- chr10:28378770:- chr10:29656860,chr10:29656866 chr10:28104251,chr10:28104245 NA NA chr10:29945789,chr10:29945795 chr10:28393180,chr10:28393174 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Guanylate_kinase(100%) |Guanylate_kin(100%) 16 19 25 146 75 ENST00000674490.1 ENST00000441595.2 upstream downstream duplicates(24),inconsistently_clipped(1),mismatches(3) CACCGGGAGGTGTGGAAGAGCCGG___ATTCTGGCTACATTGGAGATTGGTTGCTTTCTAAAACTGAAGGAGAAGCCCATGAAGAGATGGTGGATTCTCACTGAGTTTTGACTAGCGGAAGAAAAG___AGAGAGTTCAAGTGGATGGCCTTGAGGACTTGAAAAGCTGAGATATGATGATTTTGAAGTCATTTCACATCGAAGCCATGATTTAAATATCGGCGTTAAG|CTGGTTTTAGAAgAAGTTTTCGTCTTAGTAGAAAAGATAAGAAAACAAATAAATCCATGTATGAATGCAAGAAGAGTGATCAGTACGACACAGCTGACGTACCCACATACGAAGAAGTGACACCGTATCGGCGACAAACTAATGAAAAATACAGACTCGTTGTCTTGGTTG___GTCCCGTGGGAGTAGGGCTGAATGAACTGAAACGAAAGCTGCTGATCAGTGACACCCAGCACTATGGCGTGACAGTGCCCC___ATACCACCAGAGCAAGAAGAAGCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5352 MBP::LINC01541 ENSG00000197971.16::ENSG00000260676.5 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MBP ENSG00000197971.16 protein_coding - - chr18:76978827-77133683:- chr18:77066298:- chr18:74690783-74845639:- chr18:74778254:- LINC01541 ENSG00000260676.5 lncRNA - + chr18:71519962-71578956:- chr18:71547971:+ chr18:69187198-69246192:- chr18:69215207:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 24 18 17 470 39 ENST00000355994.7 unknown upstream upstream duplicates(30) GCAGCCTCCGGCCCCGGCGGCCCCTGTCTCCCGACCCCGGAAGGCGAAGCAGGCTGCCCGGGGACCCCGCGCGTGGGCGCTTGAAGCCGAGACCAGCCTGCCCGGGCCTGGGgAGGCGGAGCAGGGCCTTGGACCCCGCGGCGCCCCTCGGCCTCGGAGCAACGAGCGCAGCGCCG___CCTCTGAAGAGCCAATCCATTCAGGATGGGAAACCACGCAGGCAAACGAGAATTAAATGCCGAGAAGGCCAGTACG___AATAGTGAAACTAACAGAGGAGAATCTGAAAAAAAGAGAAACCTGGGTGAACTTTCACGGACAACCTCAGAGGACAACGAAGTGTTCG|TATTGGTATTGCTGGACCCTTCCGTACACATTGGAATCCTGAGATACTGCAAAAGCATTCAACAACCCATGTGCTGCCAGAAAAT MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVF|vlvlldpsvhigilrycksiqqpmccqk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5353 STARD10::FCHSD2 ENSG00000214530.10::ENSG00000137478.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 491 TRUE 921 TRUE 337 STARD10 ENSG00000214530.10 protein_coding - - chr11:72754729-72794047:- chr11:72780975:- chr11:72465774-72505092:- chr11:72492020:- FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72902638:- chr11:72547790-72853363:- chr11:72613683:- chr11:72777272,chr11:72777279 chr11:72910627,chr11:72910627 NA NA chr11:72488317,chr11:72488324 chr11:72621672,chr11:72621672 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none START_domain(17%)|SH3_domain(100%),Variant_SH3_domain(100%) START(0%)|SH3_1(100%),SH3_2(100%),SH3_9(100%) 6 27 18 302 205 ENST00000334805.11 ENST00000409418.9 upstream downstream duplicates(20),mismatches(1) CGGACTAGGACCAGGGCCCTGGGCCTCCCCACACTCCCCATGGAGAAGCTGGCGGCCTCTACAGAGCCCCAAGGGCCTCGGCCGGTCCTGGGCCGTGAGAGTGTCCAGGTGCCCGATGACCAAGACTTTCGCAGCTTCCGGTCAGAGTGTGAGGCTGAGGTGGGCTGGAACCTGACCTATAGCAGGGCTGGGGTGTCTGTCTGGGTGCAGGCTGTGGAGATGGATCGGACGCTGCACAAGATCAAG|GTGGTCCGGGACTACAATCTTCAGCTGTTTTTGCAAGAAAACGCTGTATTTCACAAACCCCAGCCCTTCCAGTTCCAGCCTTGTGACAGTGATACT___AGCCGACAGTTAGAATCAGAAACTGGGACCACAGAGGAGCACAGTCTAAATAAGGAAGCTCGAAAATGGGCCACACGTGTGGCACGTGAGCATAAAAACATTGTTCACCAACAACGG___GTTCTAAATGATCTGGAGTGTCATGGAGCTGCTGTATCAGAACAAAGC MEKLAASTEPQGPRPVLGRESVQVPDDQDFRSFRSECEAEVGWNLTYSRAGVSVWVQAVEMDRTLHKIK|VVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQLESETGTTEEHSLNKEARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5354 STARD10::FCHSD2 ENSG00000214530.10::ENSG00000137478.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 921 TRUE 337 STARD10 ENSG00000214530.10 protein_coding - - chr11:72754729-72794047:- chr11:72781062:- chr11:72465774-72505092:- chr11:72492107:- FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72902638:- chr11:72547790-72853363:- chr11:72613683:- chr11:72777272,chr11:72777279 chr11:72910627,chr11:72910627 NA NA chr11:72488317,chr11:72488324 chr11:72621672,chr11:72621672 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none START_domain(2%)|SH3_domain(100%),Variant_SH3_domain(100%) START(0%)|SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 2 7 227 205 ENST00000545082.5 ENST00000409418.9 upstream downstream duplicates(3) GGAAGGTGGCGTCAGCATCTGCAGCCGCGTCGACGTTGTCGGAGCCTCCGCGGAGGACCCAGGAGAGCCGGACTAGGACCAGGGCCCTGGGCCTCCCCACACTCCCCATGGAGAAGCTGGCGGCCTCTACAGAGCCCCAAGGGCCTCGGCCGGTCCTGGGCCGTGAGAGTGTCCAGGTGCCCGATGACCAAGACTTTCGCAGCTTCCGGTCAGAGTGTGAGGCTGAG|GTGGTCCGGGACTACAATCTTCAGCTGTTTTTGCAAGAAAACGCTGTATTTCACAAACCCCAGCCCTTCCAGTTCCAGCCTTGTGACAGTGATACT___AGCCGACAGTTAGAATCAGAAACTGGGACCACAGAGGAGCACAGTCTAAATAAG...CACGTGTGGCACaTGAGCATAAAAACATTGTTCACCAACAACGG___GTTCTAAATGATCTGGAGTGTCATGGAGCTGCTGTATCAGAACAAAGCCGAGCAGAG MEKLAASTEPQGPRPVLGRESVQVPDDQDFRSFRSECEAE|VVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSRQLESETGTTEEHSLN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5355 STARD10::FCHSD2 ENSG00000214530.10::ENSG00000137478.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 921 TRUE 337 STARD10 ENSG00000214530.10 protein_coding - - chr11:72754729-72794047:- chr11:72780975:- chr11:72465774-72505092:- chr11:72492020:- FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72889945:- chr11:72547790-72853363:- chr11:72600990:- chr11:72777272,chr11:72777279 chr11:72910627,chr11:72910627 NA NA chr11:72488317,chr11:72488324 chr11:72621672,chr11:72621672 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none START_domain(17%)|SH3_domain(100%),Variant_SH3_domain(100%) START(0%)|SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 7 302 219 ENST00000334805.11 ENST00000409418.9 upstream downstream duplicates(3) GTCGACGTTGTCGGAGCCTCCGCGGAGGACCCAGGAGAGCCGGACTAGGACCAGGGCCCTGGGCCTCCCCACACTCCCCATGGAGAAGCTGGCGGCCTCTACAGAGCCCCAAGGGCCTCGGCCGGTCCTGGGCCGTGAGAGTGTCCAGGTGCCCGATGACCAAGACTTTCGCAGCTTCCGGTCAGAGTGTGAGGCTGAGGTGGGCTGGAACCTGACCTATAGCAGGGCTGGGGTGTCTGTCTGGGTGCAGGCTGTGGAGATGGATCGGACGCTGCACAAGATCAAG|AGCCGACAGTTAGAATCAGAAACTGGGACCACAGAGGAGCACAGTCTAAATAAGGAAGCTCGAAAATGGGCCACACGTGTGGCACGTGAGCATAAAAACATTGTTCACCAACAACGG___GTTCTAAATGATCTGGAGTGTCATGGAGCTGCTGTATCAGAACAAAGCCGAGCAGAGCTAGAACAGAAAATAGATGAAGCTAGAGAAAATATTCGTAAAG MEKLAASTEPQGPRPVLGRESVQVPDDQDFRSFRSECEAEVGWNLTYSRAGVSVWVQAVEMDRTLHKIK|SRQLESETGTTEEHSLNKEARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5357 SLC38A1::COL2A1 ENSG00000111371.16::ENSG00000139219.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 493 FALSE NA FALSE NA SLC38A1 ENSG00000111371.16 protein_coding - - chr12:46183063-46270017:- chr12:46229153:- chr12:46576846-46663800:- chr12:46622936:- COL2A1 ENSG00000139219.19 protein_coding - - chr12:47972967-48004554:- chr12:47980062:- chr12:48366750-48398337:- chr12:48373845:- chr12:46222409,chr12:46222419 chr12:47980400,chr12:47980407 NA NA chr12:46616192,chr12:46616202 chr12:48374183,chr12:48374190 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Transmembrane_amino_acid_transporter_protein(8%)|Collagen_triple_helix_repeat_(20_copies)(19%),Fibrillar_collagen_C-terminal_domain(100%) Aa_trans(0%)|COLFI(100%),Collagen(22%) 8 22 13 1091 52 ENST00000398637.10 ENST00000380518.8 upstream downstream duplicates(11),mismatches(1) GAAAATGGTCAGATAAATAG___CAAGTTTATTTCTGATCGTGAAAGTAGAAGAAGTCTCACAAACAGCCATTTGGAAAAAAAGAAGTGTGATGAGTAT___ATTCCAGGTACAACCTCCTTAGGCATGTCTGTTTTTAACCTAAGCAACGCCATTATGGGCAGTGGGATTTTGGGACTCGCCTTTGCCCTGGCAAACACTGGAATCCTACTTTTTCT|GGTCCTACTGGAGTGACTGGTCCTAAAGGAGCCCGAGGTGCCCAAGGCCCCCCG___GGAGCCACTGGATTCCCTGGAGCTGCTGGCCGCGTTGGACCCCCAGGCTCCAAT___GGCAACCCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGTGCTCGAGGAGACAGCGGCCCCCCTGGCCGAGCTGGTGAACCCGGCCTCCAAGGTCCTGCTGGACCCCCTGGCGAGAAGGGAGAGCCTGGAGATGACGGTCCCTCT___GGTGCCGAAGGTCCACCAGGTCCCCAGGGTCTGGCTGGTCAGAGAGGCATCGTCGG ENGQINSKFISDRESRRSLTNSHLEKKKCDEYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFl|vlle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE collagen, type II, alpha 1 1 chondrosarcoma, enchondroma mesenchymal fusion translocation 5362 CNOT10::OSBPL10 ENSG00000182973.20::ENSG00000144645.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT10 ENSG00000182973.20 protein_coding + + chr3:32685145-32773875:+ chr3:32685482:+ chr3:32726637-32815367:+ chr3:32726974:+ OSBPL10 ENSG00000144645.16 protein_coding - + chr3:31657912-32077580:- chr3:32067839:+ chr3:31699404-32119072:- chr3:32109331:+ chr3:32685757,chr3:32685757 chr3:32034106,chr3:32034103 NA NA chr3:32727249,chr3:32727249 chr3:32075598,chr3:32075595 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 12 20 237 65 ENST00000328834.10 unknown downstream upstream duplicates(19),mismappers(1),mismatches(12) GGCGGGAGGCTGTGGCGGTCCCTTGGTGGGGAAGCTGTTGCTGTTGCTAGACGACGGGAACTAGCTCTCGTCACTTCCTCAGCCCGCCGTCTGCCCACTCCTCTAGCCGGAACCTGGGGGCCCGGAGCCGGGGTAGGCACAGAGTTGTCCTCGGAGGTCCAGGACAGCGGCCAGCCCGGCGGCGGGAGTCAGGGCCACGCCACCTGCAGGGAAGAACCCGAGTCGAAGCGGGAAGATGGCTGCAGACAAGCCTGCAG|ACTCAGCCTGCCTGCACCCACATGAAATAAACAGTCTTGTTGCTCACACAAAGCCTGTTTAGTGGTCTCTTCACACAGATGCGTATGACATTTGGTGCTGAAGACCAGGGTCAGAGGGACTGCTTCAAGAGACCAGTTCCCTGTCCTCACCCTCACTCTGTGAAGAGATCCACCTACAACCTCCGGTCCTCAGACCAACCAGCCCAAGGAACATCTCACCAATTTCAAATCAG___ATGGATTCTCGCTCTGTTGCCCAGGCTGGAGTCCAGTGGCGCCATCTGCAAGCTCCGCCTCCTGGGTTC?CGCCATTCTCCTGCCTCAGC MAADKPA|dsaclhpheinslvahtkpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5363 RGS10::INPP5F ENSG00000148908.15::ENSG00000198825.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RGS10 ENSG00000148908.15 protein_coding - - chr10:119499817-119542719:- chr10:119515509:- chr10:121259329-121302231:- chr10:121275021:- INPP5F ENSG00000198825.15 protein_coding + - chr10:119726042-119829147:+ chr10:119758504:- chr10:121485554-121588659:+ chr10:121518016:- chr10:119501976,chr10:119501978 chr10:119772793,chr10:119772792 NA NA chr10:121261488,chr10:121261490 chr10:121532305,chr10:121532304 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Regulator_of_G_protein_signaling_domain(81%)| RGS(43%)| 9 8 15 1032 20 ENST00000369103.3 unknown upstream downstream duplicates(11),mismatches(4) TTTGTTTTGGCTAGCATGTGAAGATTTTAAGAAAATGCAAGATAAGACGCAG___ATGCAGGAAAAGGCAAAGGAGATCTACATGACCTTTCTGTCCAGCAAGGCCTCATCACAGGTCAACGTGGAGGGGCAGTCTCGGCTCAACGAGAAGATCCTGGAAGAACCGCACCCTCTGATGTTCCAGAAACTCCAGGACCAG|CCTAAAGCAGTCTTTTCCTGGATGTCTGTGTGAAGATATGACTATACCCAGACATTACACAGAAAATGAAGAGAAGAAACACATCAATCATGTGGGCCTTTTGCACAGCTGCGTACTCTGCCAAGAACCGGGCCTTTTGCACAGCTGCATACTCCGCCAAGAACTACCTCTCCTCTCAAGGCCTCCCCGCTCCCACCCCTGGCCCTGTCCGTGTGAGATGCTTTCCATCCAGGAGCACCAGCTCCACCCATATGAGATGCTTTCCATCCAGGAGCACCAGCTCCACCCAGTTAGGCT LFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRLNEKILEEPHPLMFQKLQDQ|pkavfswmsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5364 LDLRAD3::SLC1A2 ENSG00000179241.13::ENSG00000110436.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ SLC1A2 ENSG00000110436.13 protein_coding - + chr11:35251205-35420063:- chr11:35375252:+ chr11:35272752-35441610:- chr11:35396799:+ chr11:36130070,chr11:36130064 chr11:35369258,chr11:35369249 NA NA chr11:36151620,chr11:36151614 chr11:35390805,chr11:35390796 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Low-density_lipoprotein_receptor_domain_class_A(100%)| Ldl_recept_a(100%)| 9 5 17 167 32 ENST00000315571.6 unknown downstream upstream duplicates(13),mismatches(4) CCAACCTTCTTCCCCTGTGCCAGCGGCATCCATTGCATCATTGGTCGCTTCCGGTGCAATGGGTTTGAGGACTGTCCCGATGGCAGCGATGAAGAGAACTGCA___CAGCAAACCCTCTGCTTTGCTCCACCGCCCGCTACCACTGCAAGAACGGCCTCTGTATTGACAAGAGCTTCATCTGCGATGGACAGAATAACTGTCAAGACAACAGTGATGAGGAAAGCTGTGAAAGTTCTCAAG|ATACCAAGACATTGAAGCCCAGATTGAAGTTGAATTATGGCTGAGAAGCAAACCCAGTCAGTCCTTCCAGAGAAGCTGAATGTGTTATCATTGTGGTTCCCCGCTTCACGTGAATTCAGAGGAACAAGGGGAAGAGAGGAGACACAG___AGATGGAGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTTCTAGAATCAAGCAATCCTCTTGCCTCA PTFFPCASGIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQ|dtktlkprlklnyg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5365 ITSN2::OTOF ENSG00000198399.16::ENSG00000115155.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 494 TRUE 923 TRUE 338 ITSN2 ENSG00000198399.16 protein_coding - - chr2:24202864-24360536:- chr2:24328052:- chr2:24425733-24583405:- chr2:24550921:- OTOF ENSG00000115155.19 protein_coding - - chr2:26457203-26558756:- chr2:26516599:- chr2:26680071-26781624:- chr2:26739467:- chr2:24326509,chr2:24326511 chr2:26516791,chr2:26516790 NA NA chr2:24549378,chr2:24549380 chr2:26739659,chr2:26739658 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |C2_domain(84%),FerB_(NUC096)_domain(100%),FerI_(NUC094)_domain(100%),Ferlin_C-terminus(100%) |C2(40%),FerB(100%),FerI(100%),Ferlin_C(100%) 7 10 12 33 34 ENST00000355123.9 ENST00000272371.7 upstream downstream duplicates(8),mismatches(5) CGGCAGAGCAGGGTCTCCCCGCGCCTGCCCGCGCCCAGGCTGCCGGTGCTGAGGGACGCGGAGTCGCGCTGTGACGtGCGGGAGGCGCGGCGAGGGCGCCAG___ATGGCTGAGAGCTAGCAAGGAAAACTCAGGACCATGATGGCTCAGTTTCCCACAGCTATGAATG|ACCAGCCTGTGCGTGGAGGTCCGGTATCAGGCCACTGACGGCACAGTGGGCTCCTGGGACGATGGGGACTTCCTGGGAGATGAGTCTCTTCAAGAGGAAGAGAAGGACAGCCAAGAGACGGATGGACTGCTCCCAGGCTCCCGGCCCAGCTCCCGGCCCCCAGGAGAGAAGAGCTTCCGGAG___AGCCGGGAGGAGCGTGTTCTCCGCCATGAAGCTCGGCAAAAACCGGTCTCACAAGGAGGAGCCCCAAAGACCAG___ATGAACCGGCGGTGCTGGAGATGGAAGACCTTGACCATCTGGCCATTCGGCTAGGAGATGGACTGGATCCCGACTCGGT MMAQFPTAMN|dqpvrggpvsgh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5366 ITSN2::OTOF ENSG00000198399.16::ENSG00000115155.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 923 TRUE 338 ITSN2 ENSG00000198399.16 protein_coding - - chr2:24202864-24360536:- chr2:24326660:- chr2:24425733-24583405:- chr2:24549529:- OTOF ENSG00000115155.19 protein_coding - - chr2:26457203-26558756:- chr2:26516599:- chr2:26680071-26781624:- chr2:26739467:- chr2:24326509,chr2:24326511 chr2:26516791,chr2:26516790 NA NA chr2:24549378,chr2:24549380 chr2:26739659,chr2:26739658 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2_domain(84%),FerB_(NUC096)_domain(100%),FerI_(NUC094)_domain(100%),Ferlin_C-terminus(100%) |C2(40%),FerB(100%),FerI(100%),Ferlin_C(100%) 1 1 13 2 34 ENST00000443927.5 ENST00000272371.7 upstream downstream duplicates(4),mismatches(4) CGAGGGCGCCAG___ATGGCTGAGAGCTAGCAAGGAAAACTCAGGACCATGATGGCTCAGTTTCCCACAGCTATGAATG___AACCTATTATTTAAGGATTAAT|ACCAGCCTGTGCGTGGAGGTCCGGTATCAGGCCACTGACGGCACAGTGGGCTCCTGGGACGATGGGGACTTCCTGGGAGATGAGTCTCTTCAAGAGGAAGAGAAGGACAGCCAAGAGACGGATGGACTGCTCCCAGGCTCCCGGCCCAGCTCCCGGCCCCCAGGAGAGAAGAGCTTCCGGAG___AGCCGGGAGGAGCGTGTTCTCCGCCATGAAGCTCGGCAAAAACCGGTCTCACAAGGAGGAGCCCCAAAGACCAG___ATGAACCGGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5367 RBM47::APBB2 ENSG00000163694.15::ENSG00000163697.18 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 924 TRUE 339 RBM47 ENSG00000163694.15 protein_coding - - chr4:40423267-40630875:- chr4:40594258:- chr4:40425284-40632892:- chr4:40596275:- APBB2 ENSG00000163697.18 protein_coding - - chr4:40810027-41216714:- chr4:40893411:- chr4:40812044-41218731:- chr4:40895428:- chr4:40593273,chr4:40593280,chr4:40593279 chr4:40893903,chr4:40893907,chr4:40894220 NA NA chr4:40595290,chr4:40595297,chr4:40595296 chr4:40895920,chr4:40895924,chr4:40896237 NA NA sense sense unknown intron CDS/splice-site duplication high none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |PID(62%),PTB(100%) 15 5 9 43 74 unknown ENST00000295974.12 upstream downstream duplicates(13),mismatches(1) CACGAATGAAGTGAAATAGAGGGAGAGAAGAGAATATAGGGTTGAGGTCCGGTTAGGCGAGGCCTTGAATGTCATGCAGAGGAGT...CTTTGACAGTTTATATGCTCCTCCCCAGTAAGACGTGTAGCCGTATAATGAGAGCTTTCGAGACCAAGCTGTGTCGTCAATTCTGGAAGACTGTCGTACCAGAAGGCCTTGACTTTTCCTATCTTGGTCCAATGTCACTCCTTGCAGATTTGCTATCTCAGTACAAAAGATGTGAAAGACACTGGAACATGCTGTTTTACAAAACATCTCAGAAAGAGCCAGTCTGAGAAGCAGTGTGCAATGGCCTCAG|TGTTTTGCTGTGCGTTCTCTGGGATGGGTAGAGATGGCAGAAGAGGACCTCGCCCCCGGTAAAAGTAGTGTTGCGGTCAACAACTGCATCAGGCAACTTTCCTACTGCAAAAATGACATCCGAGACACAGTCGGGATTTGGGGAGAG___GGGAAAGACATGTACCTGATCCTGGAGAATGACATGCTCAGCCTGGTGGACCCCATGGACCGCAGCGTGCTGCACTCGCAGCCCATCGTCAGCATCCGCGTGTGGGGCGTGGGCCGCGACAATGGCCG___GGATTTTGCTTATGTAGCAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Esophageal carcinoma OVARY,LUNG,UTERUS,OESOPHAGUS exact 40631413,40546439,40631413,40631413|40632480|40632125|40631995 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE 40832594,41102767,40818276,40832594|40832594|40832594|40832594 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5368 RBM47::APBB2 ENSG00000163694.15::ENSG00000163697.18 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 924 TRUE 339 RBM47 ENSG00000163694.15 protein_coding - - chr4:40423267-40630875:- chr4:40629396:- chr4:40425284-40632892:- chr4:40631413:- APBB2 ENSG00000163697.18 protein_coding - - chr4:40810027-41216714:- chr4:40893411:- chr4:40812044-41218731:- chr4:40895428:- chr4:40593273,chr4:40593280,chr4:40593279 chr4:40893903,chr4:40893907,chr4:40894220 NA NA chr4:40595290,chr4:40595297,chr4:40595296 chr4:40895920,chr4:40895924,chr4:40896237 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |PID(62%),PTB(100%) 2 0 2 181 74 ENST00000295971.12 ENST00000295974.12 upstream downstream none CGGACGAGAAGATGTTGTAGGTGACTTCCTAGCTGTGTTAAGTTGCTCCTGGGCTGTGAATGGTGTTAATTTCTGAAGTGGGCGGCTCCAAAAACTTAACAAGGAAAG|TGTTTTGCTGTGCGTTCTCTGGGATGGGTAGAGATGGCAGAAGAGGACCTCGCCCCCGGTAAAAGTAGTGTTGCGGTCAACAACTGCATCAGGCAACTTTCCTACTGCAAAAATGACATCCGAGACACAGTCGGGATTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Esophageal carcinoma OVARY,LUNG,UTERUS,OESOPHAGUS exact 40631413,40546439,40631413,40631413|40632480|40632125|40631995 TRUE,FALSE,TRUE,TRUE|FALSE|FALSE|FALSE 40832594,41102767,40818276,40832594|40832594|40832594|40832594 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5373 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 497 FALSE NA FALSE NA LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74708321:+ chr10:75910960-76469721:+ chr10:76468079:+ chr10:75530176,chr10:75530174 chr10:74688857,chr10:74688852 NA NA chr10:77289934,chr10:77289932 chr10:76448615,chr10:76448610 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Leucine-rich_repeat(15%)|pfkB_family_carbohydrate_kinase(10%) LRR_9(0%)|PfkB(0%) 4 12 13 33 345 ENST00000611255.5 ENST00000673352.1 downstream upstream duplicates(9),mismatches(1) CGCGCTCCCCGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCAAGCATCATAATTAGACGGACTGGCTGCACCTTTCCTGAGAAGCCAGACTTCCACTGATGGAAGAGCTGAAAACACAAGCCCAGGAGTGCAGACACTGCCCTAATTGCTTCCTGAGAATTCCCATATTAATAAAGAAGAAAATTATCTGCCATTTTTTCCTACTATAATAATGCTGAATCTTAATTTAGAGGGTACAAGGGTATGGTAATGCTTGTAGAATCTTTATTATCT MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|fsvstgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5374 CACHD1::ROR1 ENSG00000158966.16::ENSG00000185483.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 498 FALSE NA FALSE NA CACHD1 ENSG00000158966.16 protein_coding + + chr1:64470129-64693058:+ chr1:64679756:+ chr1:64935812-65158741:+ chr1:65145439:+ ROR1 ENSG00000185483.13 protein_coding + + chr1:63774017-64181498:+ chr1:64050686:+ chr1:64239688-64647181:+ chr1:64516358:+ chr1:64680330,chr1:64680330 chr1:64050226,chr1:64050223 NA NA chr1:65146013,chr1:65146013 chr1:64515898,chr1:64515895 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none VWA_N-terminal(100%),von_Willebrand_factor_type_A_domain(100%)|Fz_domain(100%),Kringle_domain(100%),Protein_kinase_domain(100%) VWA(100%),VWA_3(100%),VWA_N(100%)|Fz(100%),Kringle(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 6 15 78 46 ENST00000651257.2 ENST00000371079.6 downstream upstream duplicates(5),low_entropy(1),mismatches(3) CCTACTGTGCCCCCCAGAAAGAATGCTTCGGGGGGATTGTGGGAGCCAAAAGTCCCTACGTTGATGACATGGGAGCAATAG___GTGATGAGGTGATCACATTAAACATGATTAAAAGCGCCCCTGTGGGTCCTGTGGCTGGAGGGATCATGGGATGCATCATGGTCTTGGTCCTGGCGGTGTATGCCTACCGCCACCAGATTCATCGCCGGAGCCATCAGCATATGTCTCCTCTTGCTGCCCAAG|GCCCCCCTCCCACTGCAAGTCCAGGATACTC___AGATGAGTATGAAGAAGATGGATTCTGTCAGCCATACAGAGGGATTGCATGTGCAAGATTTATTGGCAACCGCACCGTCTATATGGAGTCTTTGCA...AAGGGGAAATAGAAAATCAGATCACAG___CTGCCTTCACTATGATTGGCACTTCCAGTCACTTATCTGATAAGTGTTCTCAGTTCGCCATTCCTTCCCTGTGCCACTATGCCTTCCCGTACTGCGATGAAACTTCATCCGTCCCAAAGCCCCGTGACTTGTGTCGCGATGAATGTGAAATCCTGGAGAATGTCCTGTGTCAAACAGAGTACATTTTTGCAAGATCAAATCCCATGATTCTGATGAGGCTGAAACTGCCA YCAPQKECFGGIVGAKSPYVDDMGAIGDEVITLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRRSHQHMSPLAAQ|gPPPTASPGYSDEYEEDGFCQPYRGIACARFIGNRTVYMESL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4794 chr1:64579847-64579923:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Tyrosine-protein kinase transmembrane receptor ROR1 TK Ror Q01973 TRUE Ovary exact TRUE Ovarian serous cystadenocarcinoma OVARY exact 64936625 FALSE 64624664 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5376 NUP98::BEAN1 ENSG00000110713.18::ENSG00000166546.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 499 TRUE 926 TRUE 340 NUP98 ENSG00000110713.18 protein_coding - - chr11:3671083-3797792:- chr11:3797400:- chr11:3692313-3819022:- chr11:3818630:- BEAN1 ENSG00000166546.15 protein_coding + + chr16:66427295-66493529:+ chr16:66477560:+ chr16:66461198-66527432:+ chr16:66511463:+ chr11:3784601,chr11:3784609 chr16:66470037,chr16:66470029 NA NA chr11:3805831,chr11:3805839 chr16:66503940,chr16:66503932 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 0 8 11 130 46 ENST00000359171.8 ENST00000536005.7 upstream upstream duplicates(10),mismatches(13) CGCTGCGCCCGAAGCGGCGGTCGGTGGCAGGGGTGGTAGCGGCGGCGGCGACGGTTTCGTGGGGGCCGCGCGCTGCTCTGTGAGCGGCGGG?GGCAGCAGGGG?CTCCTGACACTTCCCCTTCCCCACCGAACCGCG|TGTCGGACGAGCACACATACAGCCGCTCAAGCCGCAGGATGCGCTATGCCTGCAGCTCCTCAGAGGACTGGCCCCCACCCTTGGACATCAGCTCTGACGGGGACGTGGATGCCACGGTGCTCAGGGAGCTGTACCCAGATTCTCCACCAGG___CTACGAGGAGTGTGTGGGGCCAGGGGCCACTCAGCTGTATGTCCCCACGGACGCACCACCACCCTACTCGCTGACTGATTCCTGCCCCACGCTGGATGGCACCTCCGACTCAGGCAGCGGCCACAGCCCTGGCCGACACCAGCAGGAGCAGAGGACCCCGGCCCAAGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleoporin 98kDa 1 AML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5377 NUP98::BEAN1 ENSG00000110713.18::ENSG00000166546.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 926 TRUE 340 NUP98 ENSG00000110713.18 protein_coding - - chr11:3671083-3797792:- chr11:3793845:- chr11:3692313-3819022:- chr11:3815075:- BEAN1 ENSG00000166546.15 protein_coding + + chr16:66427295-66493529:+ chr16:66477560:+ chr16:66461198-66527432:+ chr16:66511463:+ chr11:3784601,chr11:3784609 chr16:66470037,chr16:66470029 NA NA chr11:3805831,chr11:3805839 chr16:66503940,chr16:66503932 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none none none 0 0 0 17 46 ENST00000700603.1 ENST00000536005.7 upstream upstream mismatches(1) CTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGGGGTGGTAGCGGCGGgGGCGgCGGgTTCGTGGGGGCCGCGCGCTGgTCTGTtAGCGGgcGGgGG...GCAATGATGTGATCTTGGCTCACCGCAACCTCCGCCTCGTGGGTTCAAGCAATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGATTACAG|TGTCGGACGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleoporin 98kDa 1 AML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5380 ELK1::PRKAA1 ENSG00000126767.18::ENSG00000132356.12 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELK1 ENSG00000126767.18 protein_coding - - chrX:47635521-47650604:- chrX:47649921:- chrX:47494920-47510003:- chrX:47509320:- PRKAA1 ENSG00000132356.12 protein_coding - + chr5:40759389-40798374:- chr5:40762843:+ chr5:40759491-40798476:- chr5:40762945:+ chrX:47645216,chrX:47645218 chr5:40761896,chr5:40761894 NA NA chrX:47504615,chrX:47504617 chr5:40761998,chr5:40761996 NA NA sense antisense unknown 5'UTR/splice-site CDS translocation/5'-5' high none none none 4 2 11 29 350 ENST00000376983.8 unknown upstream upstream duplicates(10) GCCACCACCACCTCCACCGCCGCCTCGGAACCCAGGCCTGGGGGGCGGTGGGGCCGCGTATGGAGCCCCCGCCCCCCGGAGCTGCCAACATTGCCAACGCCACCGCCACGCTACACACAG___CCTCAACTTTCAGGAGACCCGTCCGTGGCCTTATTTATTCCACCCTTCCTGTACATCGTAGCGAATCAATCCGTGGCGCCGCACTCCTCCGCATCCCTCTTTAACA|GTCTTGGAGTTAGGTCAACAGGAGAAGAGTCAAGTGAGGTCACAGATGAG___GAATGGCCTTCATTGGTTGCAATAGGAAGCGAAAGAGGAGACCTGAAATCAAATGAAAAAGCGTAAGCATCCTGGGGAGAAGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5384 SPEN::NEU1 ENSG00000065526.13::ENSG00000204386.12 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 929 FALSE NA SPEN ENSG00000065526.13 protein_coding + + chr1:15836095-15940456:+ chr1:15938006:+ chr1:16162590-16266951:+ chr1:16264501:+ NEU1 ENSG00000204386.12 protein_coding - - chr6:31857659-31862905:- chr6:31861450:- chr6:31825436-31830682:- chr6:31829227:- chr1:15938888 chr6:31861613 NA NA chr1:16265383 chr6:31829390 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),SPOC_domain(42%)|BNR_repeat-like_domain(89%) RRM_1(100%),RRM_5(100%),SPOC(21%)|BNR_2(71%),BNR_3(59%) 0 2 1 409 389 ENST00000375759.8 ENST00000375631.5 downstream downstream duplicates(3),mismatches(2) CCAGGACTGGTTCTGCCACACACTGAATTCCAGCCAGCCCCCAAACAAGATTCCTCTCCACACCTGACTTCCCAGAGACCCGTGGATATGGTTCAACTTCT...TGGCAACAACGTCCTGGCCCATCGGTCCCTGCCCCTTTCTGAAGGAGGGCCCCCACTAAGGATCGCCCAGAGGATGCGGCTGGAGGCAACGCAGCTGGAAGGGGTTGCCCGAAGGATGACG|GCAGCACATGGTCTCCTACAGCGTTCATTGTCAATGATGGGGATGTCCCCGATGGGCTGAACCTTGGGGCAGTAGTGAGCGATGTTGAGACAGGAGTAGTATTTCTTTTCTACTCCCTTTGTGCTCACAAGGCCGGCTGCCAGGTGGCCTCTACCATGTTG...AACTACCACTGCCACTGCCGAATTGTCCTCCGCAGCTATGATGCCTGTGATACACTAAGGCCCCGTGATGTGACCTTCGACCCTGAGCTCGTGGACCCTGT GNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMT|aahgllqrslsmmgmspmg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE spen family transcriptional repressor 1 Yes SMZL, adenoid cystic carcinoma, DLBCL leukaemia_lymphoma TSG frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 5385 TSC2::MAPK8IP3 ENSG00000103197.19::ENSG00000138834.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 930 TRUE 341 TSC2 ENSG00000103197.19 protein_coding + + chr16:2047967-2089491:+ chr16:2048065:+ chr16:2097968-2139492:+ chr16:2098066:+ MAPK8IP3 ENSG00000138834.15 protein_coding + + chr16:1706166-1770351:+ chr16:1758148:+ chr16:1756167-1820352:+ chr16:1808149:+ chr16:2048400,chr16:2048392 chr16:1754475,chr16:1754464 NA NA chr16:2098401,chr16:2098393 chr16:1804476,chr16:1804465 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |JNK-interacting_protein_leucine_zipper_II(100%),WD40_repeated_domain(100%) |JIP_LZII(100%),WD40_2(100%) 0 11 2 210 3 ENST00000643946.1 ENST00000356010.9 downstream upstream duplicates(8) GCTTCCGGCGGCGTCCCGGGGCCAGGGGGGTGCGCCTTTCTCCGCGTCGGGGCGGCCCGGAGCGCGGTGGCGCGGCGCGGG|GGGAGTTCTCAG___GAATGGGCAAAGAAGTGGGGAATCTGCTACTGGAAAACTCACAGCTTCTGGAAACCAA___AAACGCCTTGAATGTGGTGAAGAATGACCTGATTGCCAAGGTCGACCAGCTGTCCGGGGAGCAGGAGGTGCTGAGGGGCGAGTTGGAGGCTGCTAAGCAGGCCAAAGTCAAGCTGGAAAACCGTATCAAGGAGCTGGAAGAGGAACTGAAAAG___AGTGAAGTCCGAGGCCATCATCGCCCGCCGTGAACCCAAAGAAGAGGCGGAGGATGTAAGCAGCTATCTCTGTACAGAATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 2136872 FALSE 1809959 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE tuberous sclerosis 2 gene 1 Yes pulmonary lymphangioleiomyomatosis (LAM), renal angiomyolipoma, HNSCC hamartoma, renal cell carcinoma, tuberous sclerosis tuber Tuberous sclerosis 2 epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 5386 TSC2::MAPK8IP3 ENSG00000103197.19::ENSG00000138834.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 930 TRUE 341 TSC2 ENSG00000103197.19 protein_coding + + chr16:2047967-2089491:+ chr16:2048065:+ chr16:2097968-2139492:+ chr16:2098066:+ MAPK8IP3 ENSG00000138834.15 protein_coding + + chr16:1706166-1770351:+ chr16:1759958:+ chr16:1756167-1820352:+ chr16:1809959:+ chr16:2048400,chr16:2048392 chr16:1754475,chr16:1754464 NA NA chr16:2098401,chr16:2098393 chr16:1804476,chr16:1804465 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |JNK-interacting_protein_leucine_zipper_II(97%),WD40_repeated_domain(100%) |JIP_LZII(24%),WD40_2(100%) 0 5 2 210 208 ENST00000643946.1 ENST00000610761.2 downstream upstream none GCGCTTCCGGCGGCGTCCCGGGGCCAGGGGGGTGCGCCTTTCTCCGCGTCGGGGCGGCCCGGAGCGCGGTGGCGCGGCGCGGG|GAATGGGCAAAGAAGTGGGGAATCTGCTACTGGAAAACTCACAGCTTCTGGAAACCAA___AAACGCCTTGAATGTGGTGAAGAATGACCTGATTGCCAAGGTCGACCAGCTGTCCGGGGAGCAGGAGGTGCTGAGGGGCGAGTcGGAG...CGCCGTGAACCCAAAGAAGAGGCGGAGGATGTAAGCAGCTATCTCTGTACAGAATCG___GACAAAATCCCCATGGCCCAGCGCCGCCGCTTCACGCGGGTGGAGATGGCCCGTGTGCTCATGGAGCGGAACCAGTACAAGGAGCGGCTGATGGAGCTGCAGGAGGCTGTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 2136872 FALSE 1809959 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE tuberous sclerosis 2 gene 1 Yes pulmonary lymphangioleiomyomatosis (LAM), renal angiomyolipoma, HNSCC hamartoma, renal cell carcinoma, tuberous sclerosis tuber Tuberous sclerosis 2 epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 5388 MSI2::RNF123 ENSG00000153944.12::ENSG00000164068.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 501 FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57596950:+ chr17:55333212-55762050:+ chr17:55674311:+ RNF123 ENSG00000164068.16 protein_coding + + chr3:49689538-49721529:+ chr3:49697143:+ chr3:49726971-49758962:+ chr3:49734576:+ chr17:57611168 chr3:49695648 NA NA chr17:55688529 chr3:49733081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|SPRY_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%) RRM_1(100%)|LRR_6(100%),LRR_8(100%),SPRY(100%),zf-C3HC4_3(100%) 3 3 5 327 152 ENST00000284073.7 ENST00000457726.5 downstream upstream duplicates(3),low_entropy(1) ATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG___ATGGTCACAAGAACAAAGAAAA...CTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAG___GTGGAAGATGCAATGCTGATGTTTGATAAAACTACCAACAGGCACAGAG___GGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGAAAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAAATG|GAAACCCCTGAACTTCCAGAACCTGCCAGAACATTTGGACCAGTTGCTACAGGTGGACAATGAGGAGGAGGAAAGCCAGG___GACAGGTTGAAGGGCGGCTTGGCCC...GGCTTTGAGGGGCTTCTCCTGGTGGATGATGACCTGCTGGGG___GTGATTGGACACAGCAACTTTGGCACCATCCGCTCTACCACATGCGTGTACAAAG ANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKM|etpelpepartfgpvatggq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5393 PPARD::ANKS1A ENSG00000112033.14::ENSG00000064999.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 931 FALSE NA PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35342681:+ chr6:35310335-35395968:+ chr6:35310458:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34981690:+ chr6:34857032-35059183:+ chr6:34949467:+ chr6:35346537,chr6:35346534,chr6:35346534 chr6:34976486,chr6:34976480,chr6:34976481 NA NA chr6:35314314,chr6:35314311,chr6:35314311 chr6:34944263,chr6:34944257,chr6:34944258 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Ankyrin_repeats_(3_copies)(43%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) |Ank(18%),Ank_2(0%),Ank_3(15%),Ank_4(3%),Ank_5(8%),PID(100%),SAM_1(100%),SAM_2(100%) 1 2 0 104 95 ENST00000418635.6 ENST00000360359.5 downstream upstream duplicates(1) CGCGGACCTGGGGATTAATGGGAAAAGTTTTGGCAGGAGCGGGAGAATTCTGCGGAGCCTGCGGGACGGCGGCGGTGGCGCCGTAGGCAGCCGGGACAG|AACAATGACAACGAGACAGCCCTGCATTGTGCAGCGCAGTATGGCCACACAGAGGTGGTGAAGGTGCTCTTAGAGGAGCTGACGGACCCCACCATGCGCAACAACAAATTCGAG...TGAGCTGCAACACTAAGAAGCACACCCCTCTGCACTTGGCAGCAAGGAATGGCCACAAAGCCGTGGTCCAGGTCCTCCTCGATGCTGGCcTGGACAGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Liver no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 35314927 FALSE 34949467 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5395 ACOT7::CAMTA1 ENSG00000097021.21::ENSG00000171735.21 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6318492:- chr1:6324329-6453827:- chr1:6378552:- CAMTA1 ENSG00000171735.21 protein_coding + - chr1:6785454-7769706:+ chr1:7110196:- chr1:6845514-7829766:+ chr1:7170256:- chr1:6303981,chr1:6303983 chr1:7112742,chr1:7112741 NA NA chr1:6364041,chr1:6364043 chr1:7172802,chr1:7172801 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Thioesterase_superfamily(57%)| 4HBT(19%)| 1 2 6 774 12 ENST00000361521.9 unknown upstream downstream duplicates(3),mismatches(1) CCGGAAGCGGTATGAAGCCCAGAAGCTGGAGCGCATGGAGACCAAGTGGAGGAACGGGGACATCGTCCAGCCAGTCCTCAACCCAG___AGCCGAACACTGTCAGCTACAGCCAGTCCAGCTTGATCCACCTGGTGGGGCCTTCAGACTGCACCCTGCACGGCTTTGTGCACGGAG|GATGCCCCCAGCAGCTACTGGAAGAGAGTGAATGGGTGGGATCCAGATTTCAGAAGCAAATTAAGCCATCACCTGGAGCCCAGGAACACGATCCAGGAAGGAACAGGATGAATCACTTGAAACTCAGATAAATTGAATGCAGAAACACCTCAGGCCACCTCGGGCTCATTTCCAGAAAGACCCATGCTCACTTCCCGGCTCACCATAGGCAGCAGAGCCACTGAGGCCAAATCTGCCCCCATAAGAAACCAAACAGAAGAT...CCCCGAGTGCTCCTCAGCAGCGTCCCCTCTGAATCATCCCATCTAGACACTGGGTACTTTCTGGGAAGGAAAGTGCTGAGGTACAGAACAAGGACCCCCAG RKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHG|gcpqqlleesewvgsrfqkqikpspgaqehdpgrnrmnhlklr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5396 SRP68::SNHG16 ENSG00000167881.15::ENSG00000163597.17 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRP68 ENSG00000167881.15 protein_coding - - chr17:76038775-76072517:- chr17:76060308:- chr17:74034856-74068598:- chr17:74056389:- SNHG16 ENSG00000163597.17 lncRNA + - chr17:76557727-76670985:+ chr17:76653294:- chr17:74553809-74667067:+ chr17:74649376:- chr17:76058944,chr17:76058947 chr17:76663244,chr17:76663244 NA NA chr17:74055025,chr17:74055028 chr17:74659326,chr17:74659326 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RNA-binding_signal_recognition_particle_68(39%)| SRP68(32%)| 0 4 5 644 9 ENST00000307877.7 unknown upstream downstream duplicates(2) CTTTCACAGAGGAGCAGGCTGTGCTGTATAACCAACGTGTGGAAGAGATTTCACCCAACATCCGCTATTGTGCATATAATATTG___GGGACCAGTCAGCCATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGTCTCTTGGCTGAAAAATTGGAG|AtTCTCGCTCTATCGCCCAGGCTGGAGTGCAGTGACaTGATCTC?GCTCGCTGCAACCTCCACCTCCTGGGTTCAAGGGATTCTTCGGCCTCAGCCTCCCCAGTAAATGGAACTACAGGTGCATGCCACCATGCCCGACTAATTTTTATATTTTTAGTAAAGACGGaGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCT FTEEQAVLYNQRVEEISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLE|ilalsprlecsdmisarcnlhllgsrdssasaspvngttgachharlififlvktevspcwpgwsrtpdlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5400 FCHSD2::P2RY6 ENSG00000137478.15::ENSG00000171631.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:73083695:- chr11:72547790-72853363:- chr11:72794740:- P2RY6 ENSG00000171631.16 protein_coding + - chr11:73264498-73305103:+ chr11:73272730:- chr11:72975543-73016148:+ chr11:72983775:- chr11:73023100,chr11:73023105 chr11:73288303,chr11:73288305 NA NA chr11:72734145,chr11:72734150 chr11:72999348,chr11:72999350 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Fes/CIP4__and_EFC/F-BAR_homology_domain(42%)| FCH(40%)| 2 0 5 196 8 ENST00000409418.9 unknown upstream downstream duplicates(1) CCGGCCCTCCTCCTCCTCCTGGTCCTTGCTAACGCTGCCGTCGGGGAGGATTGATGTCCCTTCAGCATCATGCAGCCGCCGCCGAGGAAG___GTGAAAGTTACACAAGAACTGAAAAACATTCAAGTTGAGCAGATGACAAAACTTCAAGCCAAACATCAAGCAGAATGTGATTTGCTTGAAGATATGAG___GACATTCAGTCAGAAGAAGGCTGCTATTGAAAGAGAGTATGCACAG|CAAGGCACGGCGCAGCACCAATGTGTCCATCTCCTCCCCGCCCCCACTGACCCCGTCCTGCGGTGCCTCGTCCCTCCATGCTGTGCAGTCTGCAGGCTCCAGGCATAGCCAGGCGGAGGAAGGAGGAGGACCCCAGTGCCTGCCCTACTGCCACTCTTGCCTGTGATGAG...GTcGACTGCAGTTcCTCAGGAAcCTCCTAGGGGAGCTGAGGGGCGCAcGCCCTTCCAGGCATGGACCCAGAAAACTCACCCAAGAGTTAGCAAGTGCCTCG MQPPPRKVKVTQELKNIQVEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQ|qgtaqhqcvhllpaptdpvlrclvppccavcrlqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5402 UBN1::UBALD1 ENSG00000118900.15::ENSG00000153443.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 933 TRUE 342 UBN1 ENSG00000118900.15 protein_coding + + chr16:4846665-4882401:+ chr16:4861102:+ chr16:4896666-4932402:+ chr16:4911103:+ UBALD1 ENSG00000153443.13 protein_coding - - chr16:4608883-4615027:- chr16:4610555:- chr16:4658884-4665028:- chr16:4660556:- chr16:4866391,chr16:4866391 chr16:4614005,chr16:4614004 NA NA chr16:4916392,chr16:4916392 chr16:4664006,chr16:4664005 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none HPC2_and_ubinuclein_domain(100%),Ubinuclein_conserved_middle_domain(8%)|UBA-like_domain(24%) HUN(100%),PWWP(100%),UBN_AB(0%)|UBA_4(0%) 2 1 3 101 109 ENST00000262376.11 ENST00000590891.1 downstream downstream duplicates(4),low_entropy(1),mismatches(1) CTTGCTCCAGGCGGCCACTGCCATGGACTCGCTGACGGATTTGGACTTGGAGCATCTGCTCAGTGAGTCTCCAGAAGGAAGTCCCTTCCGAGATATGGATGATGGAAGTGATTCCCTTGGGGTGGGATTGGACCAGGAATTCAGGCAGCCCTCTTCTCTCCCCGAAGGCCTGCCAGCACCCCTGGAGAAGCGCGTTAAGGAGCTGGCTCAG|ACAGCCCTCAGCGCCTTTTTCCAGGAGACCAACATCCCCTACAGCCACCATCACCACCAGATGaTgtGcGcCCCCG...CCCCCAACTTCCCTGACGCTCTCACCATGTTCTCCCGTCTCAAGGCCTCCGAGAGCTTCCACAGCGGTGGCAGCGGCAGCCCGATGGCCGCGACAGCCACG LLQAATAMDSLTDLDLEHLLSESPEGSPFRDMDDGSDSLGVGLDQEFRQPSSLPEGLPAPLEKRVKELAQ|talsaffqetnipyshhhhqmmcap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5403 UBN1::UBALD1 ENSG00000118900.15::ENSG00000153443.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 933 TRUE 342 UBN1 ENSG00000118900.15 protein_coding + + chr16:4846665-4882401:+ chr16:4860953:+ chr16:4896666-4932402:+ chr16:4910954:+ UBALD1 ENSG00000153443.13 protein_coding - - chr16:4608883-4615027:- chr16:4610555:- chr16:4658884-4665028:- chr16:4660556:- chr16:4866391,chr16:4866391 chr16:4614005,chr16:4614004 NA NA chr16:4916392,chr16:4916392 chr16:4664006,chr16:4664005 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low none HPC2_and_ubinuclein_domain(100%)|UBA-like_domain(24%) HUN(100%),PWWP(100%)|UBA_4(0%) 0 1 0 206 109 ENST00000587027.1 ENST00000283474.12 downstream downstream duplicates(1) GACGGATTTGGACTTGGAGCATCTGCTCA|ACAGCCCTCAGCGCC[t]TTTTTCCAGGAGACCAACATCCCCTACAGCCACCATCACCACCAGATG___ATGTGCAC...CCCCCGCCACACTTCCCCCATGCCGCCACCAGCAGCTCTGCGGCCTCCAGCTGGCCCACGGCGGCCTCGCCCCCGGGGGGCCCACAGCACCACCAGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5413 FAR2::MKX ENSG00000064763.12::ENSG00000150051.14 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 936 TRUE 343 FAR2 ENSG00000064763.12 protein_coding + + chr12:29149016-29341121:+ chr12:29311950:+ chr12:29301949-29494054:+ chr12:29464883:+ MKX ENSG00000150051.14 protein_coding - - chr10:27672874-27746060:- chr10:27675554:- chr10:27961803-28034989:- chr10:27964483:- chr12:29315031,chr12:29315031,chr12:29315028 chr10:27721711,chr10:27721708,chr10:27721714 NA NA chr12:29467964,chr12:29467964,chr12:29467961 chr10:28010640,chr10:28010637,chr10:28010643 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Male_sterility_protein(74%)| Epimerase(100%),NAD_binding_4(100%),Polysacc_synt_2(100%),Semialdhyde_dh(100%)| 2 3 0 116 114 ENST00000686419.1 ENST00000375790.9 downstream downstream duplicates(1),mismatches(1) AAGGGTTTCTTCGGGCCATAAAAGCTACTCCAATGGCTGTGGCAGACGTAATTCCAGTTGATACAGTCGTCAATCTCATGCTAGCTGTAGGATGGTATACTGCAGTTCACAG___ACCTAAGTCAACATTAGTCTACCACATTACATCTGGTAACATGAATCCCTGCAATTGGCACAAAATGG|ACACTCTGGAAAACGGATCCAATAAGGGTGAAAG___CGCAGCTAACAGAAAAGGACCAAGCAAGGAT...ACACGTATTGGAAGGAGATCAACGCAGCTATGGCCTTAACAAATCTTGCACAGGGAAAGGACAAACTGCAGGGAACTACCAGCTGCATCATCCAGAAGTCG...ATGGATGTTCTTTCCGGTGTTTTCATCAACCCTCATCCTAAGAGCCGAAGCAGGGATGAAAATGACTCTCTCCCAAACCTCTTCTTATTTTTAATTATCCC...ATTTAGTTGCTTCTATAAAAGACATATAAATTATAAAAAACTCATTTTAATCAAAAATATTAACTTATTTTATGTTACTCAAACTATGCATAAAACATCTG GFLRAIKATPMAVADVIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKM|dTLENGSNKGESAANRKGPSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5414 FAR2::MKX ENSG00000064763.12::ENSG00000150051.14 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 936 TRUE 343 FAR2 ENSG00000064763.12 protein_coding + + chr12:29149016-29341121:+ chr12:29311950:+ chr12:29301949-29494054:+ chr12:29464883:+ MKX ENSG00000150051.14 protein_coding - - chr10:27672874-27746060:- chr10:27718596:- chr10:27961803-28034989:- chr10:28007525:- chr12:29315031,chr12:29315031,chr12:29315028 chr10:27721711,chr10:27721708,chr10:27721714 NA NA chr12:29467964,chr12:29467964,chr12:29467961 chr10:28010640,chr10:28010637,chr10:28010643 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Male_sterility_protein(74%)| Epimerase(100%),NAD_binding_4(100%),Polysacc_synt_2(100%),Semialdhyde_dh(100%)| 1 0 0 116 15 ENST00000686419.1 ENST00000460919.2 downstream downstream none CGTAATTCCAGTTGATACAGTCGTCAATCTCATGCTAGCTGTAGGATGGTATACTGCAGTTCACAG___ACCTAAGTCAACATTAGTCTACCACATTACATCTGGTAACATGAATCCCTGCAATTGGCACAAAATGG|TGGAAAACTTAGGTTCTTTGAGTGAGGACTCCTG VIPVDTVVNLMLAVGWYTAVHRPKSTLVYHITSGNMNPCNWHKM|vENLGSLSEDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5415 MYO9A::ZYG11B ENSG00000066933.17::ENSG00000162378.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 937 TRUE 344 MYO9A ENSG00000066933.17 protein_coding - - chr15:71822291-72118577:- chr15:71933670:- chr15:72114632-72410918:- chr15:72226011:- ZYG11B ENSG00000162378.13 protein_coding + + chr1:52726453-52827336:+ chr1:52779853:+ chr1:53192125-53293008:+ chr1:53245525:+ chr15:71920253,chr15:71920256,chr15:71920261 chr1:52779708,chr1:52779705,chr1:52779705 NA NA chr15:72212594,chr15:72212597,chr15:72212602 chr1:53245380,chr1:53245377,chr1:53245377 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Myosin_head_(motor_domain)(80%),Ras_association_(RalGDS/AF-6)_domain(100%)| Myosin_head(90%),RA(100%)| 4 0 1 34 55 ENST00000356056.10 ENST00000294353.7 upstream upstream duplicates(1) GTACA___GTATAACCCGGAAAAATCCCAGAACACCTCTTTCTGATCTCCAGGGCATGAATGCTCTAAATGAAAAAAACCAACA___TGATACATTTGATATTGCCTGGAATGGCAGAACTGGGA...CACCTCCTTGCTTGATAAAGATGGAATATTTGCTAATTCAACTAGCAGCAAACTCCTGGAGAGAGCCCATGGAATTCTCAC___GAGAAACAAAAATTTCAAATCCAAGCCTGCCCTTCCAAAG|GTGTCTGGGGAAGCCAATGAAACTCAGATTGCAGAAGCACTGAAGCGTTACAGTGAACGGG TSLLDKDGIFANSTSSKLLERAHGILTRNKNFKSKPALPK|VSGEANETQIAEALKRYSER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5416 MYO9A::ZYG11B ENSG00000066933.17::ENSG00000162378.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 937 TRUE 344 MYO9A ENSG00000066933.17 protein_coding - - chr15:71822291-72118577:- chr15:71935341:- chr15:72114632-72410918:- chr15:72227682:- ZYG11B ENSG00000162378.13 protein_coding + + chr1:52726453-52827336:+ chr1:52779853:+ chr1:53192125-53293008:+ chr1:53245525:+ chr15:71920253,chr15:71920256,chr15:71920261 chr1:52779708,chr1:52779705,chr1:52779705 NA NA chr15:72212594,chr15:72212597,chr15:72212602 chr1:53245380,chr1:53245377,chr1:53245377 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Myosin_head_(motor_domain)(80%),Ras_association_(RalGDS/AF-6)_domain(100%)| Myosin_head(90%),RA(100%)| 1 0 1 40 55 ENST00000356056.10 ENST00000294353.7 upstream upstream none GGGCATGAATGCTCTAAATGAAAAAAACCAACA___TGATACATTTGATATTGCCTGGAATGGCAGAACTGGGATTCGCCAGAGCAGACTATCAAGTGGCACCT...AGCAGCAAACTCCTGGAGAGAGCCCATGGAATTCTCAC|GTGTCTGGGGAAGCCAATGAAACTCAGATTGCAGAAGCACTGAAGCGTTACAGTGAACGGG SSKLLERAHGILt|clgkpmklrlqkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5417 TOGARAM2::BABAM2 ENSG00000189350.13::ENSG00000158019.21 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 938 TRUE 345 TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28956697:+ chr2:29179477-29275096:+ chr2:29179563:+ BABAM2 ENSG00000158019.21 protein_coding + + chr2:27889941-28338901:+ chr2:28310082:+ chr2:28112808-28561768:+ chr2:28532949:+ chr2:28986354,chr2:28986355 chr2:28301798,chr2:28301793 NA NA chr2:29209220,chr2:29209221 chr2:28524665,chr2:28524660 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 0 1 4 10 19 ENST00000401723.5 ENST00000361704.6 downstream upstream duplicates(3),mismatches(2) GCGCTTCGGAGAACCACTGCTGCCATTCCCTGATCGATAGATGCTTGGGGTGCTTCCTGTTTCTCAGTAAAGTGAAGTTGCGGCGACCTCGTGCCTGCCTTATGTGCACCTGTGCCAGCATCTTTCTCAG|AAGAGAGAGCAACAGAGATGGGGAGGAATCCAGCTCTGCCTGACATCCAGGCATCCTCTCCAA...CCAGACTGCCTGTCCACATGCGTGTCAGCACATACAGCCGCTTCCTGGAAGCCGCCTGGAATGTCTTCACGGCAGCGTTTTGCTCACACAGCAGCTTTTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5418 TOGARAM2::BABAM2 ENSG00000189350.13::ENSG00000158019.21 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 938 TRUE 345 TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28956697:+ chr2:29179477-29275096:+ chr2:29179563:+ BABAM2 ENSG00000158019.21 protein_coding + + chr2:27889941-28338901:+ chr2:28338450:+ chr2:28112808-28561768:+ chr2:28561317:+ chr2:28986354,chr2:28986355 chr2:28301798,chr2:28301793 NA NA chr2:29209220,chr2:29209221 chr2:28524665,chr2:28524660 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 0 3 10 117 ENST00000401723.5 ENST00000379624.6 downstream upstream duplicates(1),mismatches(1) GCGCTTCGGAGAACCACTGCTGCCATTCCCTGATCGATAGATGCTTGGGGTGCTTCCTGTTTCTCAGTAAAGTGAAGTTGCGGCGACCTCGTGCCTGCCTTATGTGCACCTGTGCCAGCATCTTTCTCAG|GGCTTATTTCAAAACCTTTGTCCCTCAGTTCCAGGAGGCAGCATTTGCCAATGGAAAGCTCTAGGAAACACCAGTCTTGAGAGGTGGCCAGCCAGACTGCCTGTCCACATGCGTGTCAGCACATACAGCCGCTTCCTGGAAGCCGCCTGGAATGTCTTCACGGCAGCGTTTTGCTCACACAGCAGCTTTTGCACGCCCaAGGCAGCCCCGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5421 SP2-AS1::SKAP1 ENSG00000234494.8::ENSG00000141293.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47918452:- chr17:45974696-46018776:- chr17:45995818:- SKAP1 ENSG00000141293.16 protein_coding - - chr17:48133442-48430275:- chr17:48255097:- chr17:46210804-46507637:- chr17:46332459:- chr17:47917899,chr17:47917903 chr17:48258323,chr17:48258324 NA NA chr17:45995265,chr17:45995269 chr17:46335685,chr17:46335686 NA NA sense sense unknown exon/splice-site intron duplication high none |PH_domain(100%),SH3_domain(100%) |PH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 2 2 11 1 ENST00000585280.5 unknown upstream downstream none CTGGGTTTTAGTCCTGTCTCCATCAACCTCAAGAAATGGGACCTCATGGAAGGGAGGGGAGGCAATGCCGAGGATGTGCTCCTGAGCAGGTGCCACAATTCTTCACCTGTAAG|GTCCCTCTGTCTCTCCTGTGATGACGTTCAGCATTTGAAGGAGGAGTACTAGCCCATCCAGGGGAGGAGCTTCTGATTCATTTCAATGTGTAGAGAAGTTTCCATGAAAGGGAAAGAAGAAATCTCAACAGCTTACCCAAAGGAAAAAAGAAAAACAAAACAAAAGCCCAAGCTATAAGAAAATTCAAGTGCTCTTGGGATCATATCATAGATTTTCAGACCATTGCTGATGATGTTAGAATTGTATTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1203 chr17:48156427-48156511:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5422 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 939 TRUE 346 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80756892:- chr14:80943326-81425861:- chr14:81223236:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80216737:- chr14:80663869-80854100:- chr14:80683080:- chr14:80751788,chr14:80751794 chr14:80252396,chr14:80252399 NA NA chr14:81218132,chr14:81218138 chr14:80718739,chr14:80718742 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Iodothyronine_deiodinase(100%) |T4_deiodinase(100%) 0 2 2 62 24 ENST00000555265.6 ENST00000553594.1 upstream downstream none CAAGGACTCAGTGGAGAAATTAAAA___GTTTTTTCATCTGGTCCTGATATACATTATGACCCACATCGCTGGTTAGCAGAAAGCAAG|TATTTAGGGAGAAAGAAGAGATTGAGTCACAGTTTCAGAAAAGAAAGG___TAGGTAGCCTGG[aa]AAAAAAAAGAGAAGCAACAGTTCC...TTGCTCAAG___AGGGTGAAGGGGAACCAGAGCGCACAAGGGAACTGACTCAGGAGGCAGAGAAGATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAA KDSVEKLKVFSSGPDIHYDPHRWLAESK|ylgrkkrlshsfrker* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5423 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 939 TRUE 346 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80756892:- chr14:80943326-81425861:- chr14:81223236:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80203288:- chr14:80663869-80854100:- chr14:80669631:- chr14:80751788,chr14:80751794 chr14:80252396,chr14:80252399 NA NA chr14:81218132,chr14:81218138 chr14:80718739,chr14:80718742 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none |Iodothyronine_deiodinase(72%) |T4_deiodinase(6%) 1 0 0 62 12 ENST00000555265.6 ENST00000557010.5 upstream downstream none CTAAAATTCATCGTGGTCAGCTGGAGAAGTTGAAATCACAGTGTGACAGACTGACAGAGGAATTAACCCAGAATGAAAATGAGAACAAAAAACTGAAGCTA...AAATTAAAA___GTTTTTTCATCTGGTCCTGATATACATTATGACCCACATCGCTGGTTAGCAGAAAGCAAG|GTGAAATTGGGTGAGGATGCCCCCAATTCCAG KLKVFSSGPDIHYDPHRWLAESK|VKLGEDAPNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5424 TFEB::PGC ENSG00000112561.19::ENSG00000096088.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 506 FALSE NA FALSE NA TFEB ENSG00000112561.19 protein_coding - - chr6:41683978-41736259:- chr6:41735350:- chr6:41651716-41703997:- chr6:41703088:- PGC ENSG00000096088.16 protein_coding - - chr6:41736711-41754109:- chr6:41744808:- chr6:41704449-41721847:- chr6:41712546:- chr6:41707767,chr6:41707773 chr6:41749754,chr6:41749757 NA NA chr6:41675505,chr6:41675511 chr6:41717492,chr6:41717495 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |A1_Propeptide_(90%),Eukaryotic_aspartyl_protease(100%) |A1_Propeptide(0%),Asp(100%),TAXi_N(100%) 2 2 0 20 2 ENST00000373033.6 ENST00000356667.8 upstream downstream none CGGGAAGGGCGGACGGGGCGGGCCTCCCTGGTGGCACGGGGCCGGAGCAGGCCGGGAGCAGGgGGCGGGCACAGCTTGCGGGgCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAG|AGTGCCCCTGAAGAAATTTAAGTCTATCCGTGAGACCATGAAGGAGAAGGGCTTGCTGGGGGAGTTCCTGAGGACCCACAAGTATGATCCTGCTTGGAAGTACCGCTTTGGTGACCTCAGCGTGACCTACGAGCCCATGGCCTACATGGAT___GTCCAGAGCATCCAGGTCCCCAACCAGGAGTTCGGCTTGAGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Stomach exact TRUE Ovarian serous cystadenocarcinoma,Stomach adenocarcinoma OVARY,STOMACH exact 41703088,41703088|41703088|41700387|41703884 TRUE,TRUE|TRUE|FALSE|FALSE 41711127,41712546|41710227|41712546|41710227 FALSE,TRUE|FALSE|TRUE|FALSE YES,PARTIALLY 5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE transcription factor EB 1 renal cell carcinoma (childhood epithelioid) epithelial,mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5425 TSPAN9::TEAD4 ENSG00000011105.14::ENSG00000197905.10 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 940 TRUE 347 TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3083719:+ chr12:3186521-3395730:+ chr12:3192885:+ TEAD4 ENSG00000197905.10 protein_coding + + chr12:2959330-3040676:+ chr12:2994738:+ chr12:3068496-3149842:+ chr12:3103904:+ chr12:3100522,chr12:3100523 chr12:2992728,chr12:2992726 NA NA chr12:3209688,chr12:3209689 chr12:3101894,chr12:3101892 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |TEA/ATTS_domain(100%),YAP_binding_domain(100%) |TEA(100%),YBD(100%) 1 1 2 95 127 ENST00000011898.10 ENST00000358409.7 downstream upstream duplicates(2),mismatches(1) GGCGGCGGCGGCGGCGGTGCCGGAGCGCGAGCAGAGCGGAGACCCCCAGGTCCTGCGGGCGCG___GAATATCCTGGAACCTTCTTTTGTTTGTCAGCAGCCAAGGTGTTTCCAGGAAGTTCAGAGAGAACAG|GTCCAACGAGCGCTCCTCCAAGCGGAGCCTTGGAGGGCACGGCCGGCACCATTACCTCCAACGAGTGGAGCTCTCCCACCTCCCCTGAGGGGAGCACCGCCTCTGGGGGCAGTCAGGCACTGGACAAGCCCATCGACAATGACGCAGAGGGCGTGTGGAGCCCGGATATTGAGCAGAGTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5426 TSPAN9::TEAD4 ENSG00000011105.14::ENSG00000197905.10 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 940 TRUE 347 TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3077453:+ chr12:3186521-3395730:+ chr12:3186619:+ TEAD4 ENSG00000197905.10 protein_coding + + chr12:2959330-3040676:+ chr12:2994738:+ chr12:3068496-3149842:+ chr12:3103904:+ chr12:3100522,chr12:3100523 chr12:2992728,chr12:2992726 NA NA chr12:3209688,chr12:3209689 chr12:3101894,chr12:3101892 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |TEA/ATTS_domain(100%),YAP_binding_domain(100%) |TEA(100%),YBD(100%) 0 1 0 84 127 ENST00000537971.5 ENST00000358409.7 downstream upstream none GGCGGCGGTGCCGGAGCGCGAGCAGAGCGGAGACCCCCAGGTCCTGCGGGCGCG|GTCCAACGAGCGCTCCTCCAAGCGGAGCCTTGGAGGGCACGGCCGGC...GGGGgcCcCCGCCTCgGGGGGCAGTCAGGCACTGGACAAGCCCATCGACAATGACGCAGAGGGCGTGTGGAGCCCGGATATTGAGCAGAGTTTCCAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5436 GIGYF2::EIF4E2 ENSG00000204120.16::ENSG00000135930.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 941 FALSE NA GIGYF2 ENSG00000204120.16 protein_coding + + chr2:232697299-232860605:+ chr2:232809811:+ chr2:233562009-233725315:+ chr2:233674521:+ EIF4E2 ENSG00000135930.15 protein_coding + + chr2:232550659-232583644:+ chr2:232580904:+ chr2:233415369-233448354:+ chr2:233445614:+ chr2:232810873,chr2:232810867 chr2:232573997,chr2:232573988 NA NA chr2:233675583,chr2:233675577 chr2:233438707,chr2:233438698 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none GYF_domain(100%)| GYF(100%),IRK(100%),IRK_C(100%)| 0 1 0 131 89 ENST00000373563.9 ENST00000409098.5 downstream upstream none CAAGAACTCACAGCCTTATACCAGATGCAGCACCTGCAGTACCAGCAGTTTTTAATACA|GGACAATTCAAGCTTTCGAAATACAAAAATCACATTGTGAGAGTACACAAGCTGGCAATAATCCTTTTCTGTATGTGTGTGTTTGTCCGAAATGGATGGGAGGCC QELTALYQMQHLQYQQFLIq|DNSSFRNTKITL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Testicular Germ Cell Tumors,Breast invasive carcinoma TESTICULAR,BREAST no_match 233612454|233612454,233599948 FALSE|FALSE,FALSE 233438973|233445614,233421126 FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5445 RAB11FIP4::NF1 ENSG00000131242.18::ENSG00000196712.20 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 944 TRUE 348 RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31488272:+ chr17:29718693-29865230:+ chr17:29815290:+ NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31155983:+ chr17:29421945-29709134:+ chr17:29483001:+ chr17:31504775,chr17:31504775 chr17:31124584,chr17:31124589 NA NA chr17:29831793,chr17:29831793 chr17:29451602,chr17:29451607 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Divergent_CRAL/TRIO_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%) EF-hand_8(100%)|CRAL_TRIO_2(100%),EVI2A(100%),LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%),MOR2-PAG1_mid(100%),RasGAP(100%) 0 5 0 76 165 ENST00000394744.6 ENST00000356175.7 downstream upstream mismatches(2) CGCGTCCCCGCGCGCCGCCGACCCGCGCCCGCTGGCTTCCGCGCCTCTGCCGGGGAGCGGCCCGCGGATGCGCACCCCGCCAGCTCTCGGGAGCCAG|CTTCCAATAAAAACAGGACAGCAGAACACACATACCAAAGTCAGTACTGAGCACAACAAGGAATGTCTAATCAATATTTCCAAATACAAGTTTTCTTTGGTTATAAGCGGCCTCACTACTATTTTAAAGAATGTTAACAATATG___AGAATATTTGGAGAAG...AAAAAATTTATATCTCTCTCAGTTGATTATATTGGATACACTGGAAAAATGTCTTGCTGGG___CAACCAAAGGACACAATGAGATTAGATGAAACGATGCTGGTCAAcCAGTTGCTGCCAGAAATCTGCCATTTTCTTCACACCTGTCGTGAAGGAAACCAGCATGCAGCTGAACTTCGGAATTCTGCCTCTGGGGTTTTcTTTTCTCTCAGCTGCAACAACTTCAATGCAGTCTTTAGTCGCATTTCTACCAG___GTTACAGGAATTAACTGTTTGTTC MRTPPALGSQ|LPIKTGQQNTHTKVSTEHNKECLINISKYKFSLVISGLTTILKNVNNMRIFGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation 5446 RAB11FIP4::NF1 ENSG00000131242.18::ENSG00000196712.20 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 944 TRUE 348 RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31488432:+ chr17:29718693-29865230:+ chr17:29815450:+ NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31155983:+ chr17:29421945-29709134:+ chr17:29483001:+ chr17:31504775,chr17:31504775 chr17:31124584,chr17:31124589 NA NA chr17:29831793,chr17:29831793 chr17:29451602,chr17:29451607 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication low none |Divergent_CRAL/TRIO_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%) EF-hand_8(100%)|CRAL_TRIO_2(100%),EVI2A(100%),LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%),MOR2-PAG1_mid(100%),RasGAP(100%) 0 1 0 7 165 ENST00000578694.1 ENST00000356175.7 downstream upstream none CGAGTAGAAGCCGCTGCCAG|CcTCCAATAAAAACAGGACAGCAGAACACACATACCAAAGTCAGTACTGAGCACAACAAGGAATGTCTAATCAATAcTTCC...AAAAAATgTATATCTCTCTCAGTTGATTATATTGGATACACTGGAAAAATGTCTTGCTGGG___CAACCAAAGGACACAATGAGATTAGATGAAACGATGCcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation 5447 LINC00963::ENSG00000226355 ENSG00000204054.14::ENSG00000226355.2 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 945 TRUE 349 LINC00963 ENSG00000204054.14 lncRNA + + chr9:129476946-129513687:+ chr9:129489299:+ chr9:132239225-132275966:+ chr9:132251578:+ ENSG00000226355 ENSG00000226355.2 lncRNA + + chr9:129438216-129447545:+ chr9:129442893:+ chr9:132200495-132209824:+ chr9:132205172:+ chr9:129492772,chr9:129492766 chr9:129441544,chr9:129441535 NA NA chr9:132255051,chr9:132255045 chr9:132203823,chr9:132203814 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 2 2 299 9 ENST00000656664.1 ENST00000663459.1 downstream upstream duplicates(1) TCCACGTGTTACCTAAGAGAGCTTTCCAGCCTGTGCTAAGAAAACTGCCCCACATCATCTGCAGTAGGACGGGGGAGTTGGAGCCCTGGTCAGGCCACTCTGCTACTGACCACAGTTTTCTCATCTCTAAAAAGGCGCAGTAACAATATAATTACCGTATGCAGTCCCCCAGGATACAGGGTCAAAGGAGAGCACAACCATCGCAGTTGGAAGCCCATGGGGCAG|CCACCCAGGACTTTGTGACCACAGCCCTAGCAAACGAATACGCCGCATTTCACAGGGCCCTACAGACAGGAGATGGGcTCTAAGGGAATTAACCTACTTGCAAGCAGAAATGAAAGGGAAAGAGAAAATCCAGAAATGTTGGATTTGCAGGATTGAAAAAGGCAACTATTCCTCATCTCGGTCCAATGAAAG...TGTCACGTGCAGGAGGCCACCTGTGCTGCAGGAGGCTGAGCTTGGGTGCTGTGCCCCCAGCTGGGAGAAGGCTGGGGTGGGCCAGGGAAGCTGTGCTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5448 LINC00963::ENSG00000226355 ENSG00000204054.14::ENSG00000226355.2 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 945 TRUE 349 LINC00963 ENSG00000204054.14 lncRNA + + chr9:129476946-129513687:+ chr9:129489299:+ chr9:132239225-132275966:+ chr9:132251578:+ ENSG00000226355 ENSG00000226355.2 lncRNA + + chr9:129438216-129447545:+ chr9:129446772:+ chr9:132200495-132209824:+ chr9:132209051:+ chr9:129492772,chr9:129492766 chr9:129441544,chr9:129441535 NA NA chr9:132255051,chr9:132255045 chr9:132203823,chr9:132203814 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 299 4 ENST00000656664.1 ENST00000655097.1 downstream upstream mismatches(1) ATCGCCGCCCCCGGCCCCGACGCTGGCCTGCGGCGgCTGTTTGTGCAaAGCGAGGCCCCGCCGGCCGGGaTTGACGgCAGGCTtGgcGGGCCTGG...GTTGGAAGCCCATGGGGCAG|GTCTCCTATAGAGAGAAGCGTTGACTGGGGACACTCGCTGCTTGCGTTTTGCTGGTAGCTGtGCTGGAAGGTCCACAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5451 CNNM2::GBF1 ENSG00000148842.18::ENSG00000107862.7 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 946 TRUE 350 CNNM2 ENSG00000148842.18 protein_coding + + chr10:102918294-103090222:+ chr10:102920101:+ chr10:104678051-104849979:+ chr10:104679858:+ GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102379284:+ chr10:104005128-104142656:+ chr10:104139041:+ chr10:102947988 chr10:102378185 NA NA chr10:104707745 chr10:104137942 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none CBS_domain(39%),Cyclin_M_transmembrane_N-terminal_domain(100%)| CBS(0%),DUF21(100%)| 1 1 1 55 318 ENST00000369878.9 ENST00000676513.1 downstream upstream none CTGGAGCTCCGCACCAAGACGGTGGAGGACGTGATGACCCCACTCCGGGACTGCTTCATGATCACCGGCGAAGCCATCCTGGACTTCAACACCATGTCTGA...CTTGGCCTTCGTGGATCCCGATGACTGTACCCCCCTGAAAACCATCACCAAATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCTGGAAGAATTTAAGAAAG|TTGCTAGACCTGATGCACACCCTGCACACGCGGGaAGCaTCTATCTAC...GCCAGGTACGGATGCAGGCACTGACCTATCTGCAGCGAGCACTACTTGTACATGATCTGCAAAAaaTAGATGCCCTGGAATGGGAGTC LAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK|varpdahpahagsiyl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5452 CNNM2::GBF1 ENSG00000148842.18::ENSG00000107862.7 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 946 TRUE 350 CNNM2 ENSG00000148842.18 protein_coding + + chr10:102918294-103090222:+ chr10:102920101:+ chr10:104678051-104849979:+ chr10:104679858:+ GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102379521:+ chr10:104005128-104142656:+ chr10:104139278:+ chr10:102947988 chr10:102378185 NA NA chr10:104707745 chr10:104137942 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none CBS_domain(39%),Cyclin_M_transmembrane_N-terminal_domain(100%)| CBS(0%),DUF21(100%)| 0 0 0 55 264 ENST00000369878.9 ENST00000676513.1 downstream upstream low_entropy(1) ATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCTGGAAGAATTTAAGAAAG|GTATTGCCTGCCTGTGCTGCGATGCCC...ACTTGTACATGATCTGCAAAAGCTAGATGCCCTGGAATGGGAGTCCTGTTTTAACAAG___GTGCTGTTTCCTCTACTTACCAAGCTCTTGGAGAACATCAGCC FYNHPLHFVFNDTKLDAMLEEFKK|gIACLCCDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5456 INTS4::GAB2 ENSG00000149262.19::ENSG00000033327.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77878845:- chr11:77585464-77705761:- chr11:77589891:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78223676:- chr11:77926339-78129394:- chr11:77934722:- chr11:77878258,chr11:77878262 chr11:78224242,chr11:78224243 NA NA chr11:77589304,chr11:77589308 chr11:77935288,chr11:77935289 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none HEAT_repeat_associated_with_sister_chromatid_cohesion(100%),HEAT_repeats(100%)| Cohesin_HEAT(100%),HEAT_2(100%)| 2 0 1 443 372 ENST00000695097.1 ENST00000361507.5 upstream downstream none CACACCGCTTGGACAG___AGGCATGCCAGGTGGAAGTGAGGCTGCTGCTGGCCTACAACTCCAGTGCTCGCATTCCAAAATGCCCCTGGATGGAGGGTGGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATTCCCTTCAGCAAGCCTGTAAAAGTTTATATAATGCCCAAACCTGCACGGCGCTAAGGCAAAAACAGTCTT...AGGGCCCTTCTTAGGTGTCAGAATGAGCCAAGCCTGAAGCACTTCACCTGGAATTGATGTGTAGGCTTAAGGA|CCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATG...TTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCATCACTTTGACTCACTTGGCTACCCATCAACAACCCTTCCTGTGCACCGAGGCCCCAGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 77690042|77692505 FALSE|FALSE 77991947|77991947 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5468 CTDSPL2::GOLM2 ENSG00000137770.14::ENSG00000166734.20 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CTDSPL2 ENSG00000137770.14 protein_coding + + chr15:44427622-44529038:+ chr15:44459200:+ chr15:44719820-44821236:+ chr15:44751398:+ GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44413336:+ chr15:44580917-44707956:+ chr15:44705534:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none none 0 1 2 201 530 ENST00000260327.9 ENST00000299957.11 downstream upstream duplicates(3) AGGAAATATTCAGAGGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGAAGAATGAAACCGGCTTGTTGTCTTCAATTAAAAAATTTATTAAAGGAAGCACACCTAAG|ATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGACTgTGGAAAGCAACATTTCAATGATGTCCTTTAAGTCCTAAAGGAATGCTTCAGAAAACCTAAAGTGCTGTAAAATGAAATCATTCTgCTTTGTCCTTTCTGACTTTTGTTGTAAAGACGAATTGTATCAGTTGTAAAGATACATTGAGATAGAATTAAGGAAAAACTTTAATG...AAATAGATAAACAGGACAAAATAGTTGTACAGGTTATATGTGGCATAGCATAACCACAGTAAGAACAGAACAGATATTCAGCAGAAAACTTTTTATACTC RKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPK|mmknesfkwilqtvesnismmsfks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Prostate exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5469 SLC5A4-AS1::SLC5A1 ENSG00000242082.2::ENSG00000100170.10 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SLC5A4-AS1 ENSG00000242082.2 lncRNA + + chr22:32205115-32278382:+ chr22:32207276:+ chr22:32601102-32674369:+ chr22:32603263:+ SLC5A1 ENSG00000100170.10 protein_coding + + chr22:32043261-32113029:+ chr22:32099183:+ chr22:32439248-32509016:+ chr22:32495170:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Sodium:solute_symporter_family(15%) |SSF(5%) 0 1 1 10 3 ENST00000452181.2 ENST00000266088.9 downstream upstream none GCAGAATAG___GCTTATCTGACTTTGCCTGCCCAGTTGCTCCGTGCCAGGAGGAGGAGCCACTTATTCCATGCTGGAGGCTGGAGCTGGGGGgACCGCAGCTC...GGTTGGTGGTGGCGATGGAGACTACAGAGCACCAGAGCG|GTTGTTTATCCTGGTGCTGATTGGCATCAGCATCGCCTGGGTGCCCATTGTGCAGTCAGCAC...CATCACCAGTTACTTGGGACCACCCATTGCGGCTGTCTTCCTGCTTGCTATTTTCTGGAAGAGAGTCAATGAGCCA___GGAGCCTTTTGGGGACTGATCCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5470 PEF1::RPAP3-DT ENSG00000162517.13::ENSG00000257433.8 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 948 TRUE 351 PEF1 ENSG00000162517.13 protein_coding - - chr1:31629866-31644896:- chr1:31644841:- chr1:32095467-32110497:- chr1:32110442:- RPAP3-DT ENSG00000257433.8 lncRNA + + chr12:47706058-47742294:+ chr12:47728887:+ chr12:48099841-48136077:+ chr12:48122670:+ chr1:31636931,chr1:31636933 chr12:47728819,chr12:47728817 NA NA chr1:32102532,chr1:32102534 chr12:48122602,chr12:48122600 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 2 0 27 60 ENST00000373703.5 ENST00000692059.1 upstream upstream duplicates(1) GTCAGAATCACCATGGCCAGCTATCCTTACCGGCAG|GTGTCTGGGGTCTGTCAGGATCAACAGGCCTTGAGAGAGACTGACCCAGAGGACTACTAAAAGGGACACCTGCCCAGGCCAGCCTATTCTACCATCCTCGTTCTCCTGCAAAACCAAGGCCACGTCATTTCAGCAGAGGACCTGCGTGTGGAAGGACCCTGCAGCTGGCCCATCACAGGAG MASYPYRQ|vsgvcqdqqalretdpedy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5471 PEF1::RPAP3-DT ENSG00000162517.13::ENSG00000257433.8 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 948 TRUE 351 PEF1 ENSG00000162517.13 protein_coding - - chr1:31629866-31644896:- chr1:31644841:- chr1:32095467-32110497:- chr1:32110442:- RPAP3-DT ENSG00000257433.8 lncRNA + + chr12:47706058-47742294:+ chr12:47738915:+ chr12:48099841-48136077:+ chr12:48132698:+ chr1:31636931,chr1:31636933 chr12:47728819,chr12:47728817 NA NA chr1:32102532,chr1:32102534 chr12:48122602,chr12:48122600 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 1 0 27 12 ENST00000373703.5 ENST00000547799.5 upstream upstream none GTCAGAATCACCATGGCCAGCTATCCTTACCGGCAG|GCCCTGAAGGCAGCCCGTATTTGTCTGGATGTCTTCATTCTTCCcGTCTAAGAACTCCTAATT...CAGAATAGTCAAAACCCTCAAAATCCTCAAAAGTTCCTGGAGGTGGGAGGTTCCACCCCCAACTCTATCCTCGCCTCTTCTACTGGTCTAGCCCGCAAGCC MASYPYRQ|alkaaricldvfilpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5481 NIBAN2::METRNL ENSG00000136830.12::ENSG00000176845.13 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE TRUE 509 FALSE NA FALSE NA NIBAN2 ENSG00000136830.12 protein_coding - - chr9:127505339-127578989:- chr9:127523679:- chr9:130267618-130341268:- chr9:130285958:- METRNL ENSG00000176845.13 protein_coding + + chr17:83079609-83095122:+ chr17:83093167:+ chr17:81037485-81052867:+ chr17:81050912:+ chr9:127517965,chr9:127517969 chr17:83085760,chr17:83085756 NA NA chr9:130280244,chr9:130280248 chr17:81043636,chr17:81043632 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 193 193 252 1417 686 ENST00000373314.7 ENST00000320095.12 upstream upstream duplicates(76),low_entropy(17),mismatches(168),multimappers(2) CAAAATCCTCACGTCCGTGGACCAATACCTGGAGCTCATTGGCAACTCCTTACCAG___GGACCACGGCAAAGTCGGGCAGTGCCCCCATCCTCAAGTGCCCCACACAGTTCCCGCTCATCCTCTGGCATCCTTATGCGCGTCACTACTACTTCTGCATGATGACAGAAGCCGAGCAGGACAAGTGGCAGGCTGTGCTGCAGGACTGCATCCGGCACTGCAACAATG|CGCCGTGCCGTCCCTGCAGTGACACCGAGGTGCTCCTAGCCGTCTGCACCAGCGACTTCG___CCGTTCGAGGCTCCATCCAGCAAGTTACCCACGAGCCTGAGCGGCAGGACTCAGCCATCCACCTGCGCGTGAGCAGACTCTATCGGCAGAAAAGCAGGGTCTTCGAGCCGGTGCCCGAGGGTGACGGCC KILTSVDQYLELIGNSLPGTTAKSGSAPILKCPTQFPLILWHPYARHYYFCMMTEAEQDKWQAVLQDCIRHCNN|aPCRPCSDTEVLLAVCTSDFAVRGSIQQVTHEPERQDSAIHLRVSRLYRQKSRVFEPVPEGDG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5482 CPT1A::KRTAP5-11 ENSG00000110090.13::ENSG00000204571.7 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68804000:- chr11:68522088-68611878:- chr11:68571468:- KRTAP5-11 ENSG00000204571.7 protein_coding - - chr11:71581855-71603353:- chr11:71582157:- chr11:71292901-71314399:- chr11:71293203:- chr11:68801754,chr11:68801757 chr11:71582533,chr11:71582533 NA NA chr11:68569222,chr11:68569225 chr11:71293579,chr11:71293579 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Carnitine_O-palmitoyltransferase_N-terminus(100%),Choline/Carnitine_o-acyltransferase(2%)| CPT_N(100%),Carn_acyltransf(0%)| 139 128 119 545 343 ENST00000376618.6 ENST00000526239.1 upstream downstream duplicates(32),mismatches(17) CGAAGAACGTGGTCAGCGGCGTGCTGTTTGGCACCGGCCTGTGGGTGGCCCTCATCGTCACCATGCGCTACTCCCTGAAAGTGCTGCTCTCCTACCACGGGTGGATGTTCACTGAGCACGGCAAGATGAGTCGTGCCACCAAGATCTGGATG___GGTATGGTCAAGATCTTTTCAGGCCGAAAACCCATGTTGTACAGCTTCCAGACATCGCTGCCTCGCCTGCCGGTCCCGGCTGTCAAAGACACTGTGAACAGG|GAGGTGTTCTTCCCTGGACGCCATGGTGTTCCCTGCACTTGGGTGTGGACCATCTTCTTCTTCTCCCTGGGCTGACTGAGATGCTAGGTCTGACCCCACAAGGCCAGGCCGACATTCCTGAGTGATCACTAAGAACCAGTTTCTCAACCACCACTGGGATTCTGGGTCCTCCTGGGCTGCTGCCTGTTCTCCTGTGACCCACCTGTGAGCAAGAAGGTCTCCTTCCTTCCTGTTGT KNVVSGVLFGTGLWVALIVTMRYSLKVLLSYHGWMFTEHGKMSRATKIWMGMVKIFSGRKPMLYSFQTSLPRLPVPAVKDTVNR|evffpgrhgvpctwvwtifffslg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5487 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE TRUE 510 FALSE NA FALSE NA SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128084710:+ chr5:127419458-127525369:+ chr5:127420402:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127754268:+ chr5:127039053-127277199:+ chr5:127089960:+ chr5:128103305,chr5:128103305 chr5:127718018,chr5:127718015 NA NA chr5:127438997,chr5:127438997 chr5:127053710,chr5:127053707 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Amino_acid_permease_N-terminal(98%)| AA_permease_N(0%)| 16 7 14 87 26 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(3),mismatches(5) CGTCGGCTGAAGACAGCCTGTCAGATGCTGCCGGGGTCGGAGTCGACGGGCCCAACGTGAGCTTCCAGAACGGCGGGG?CACGGTGCTGAGCGAGGGCAGCAGCCTGCACTCCGGCGGCGGCGGCGGCAGTGGGCACCACCAGCACTACTATTATGATACCCACACCAACACCTACTACCTGCGCACCTTCGGCCACAACACCATGGACGCTGTGCCCAGGATCGATCACTACCGGCACACAGCCGCGCAGCTGGGCGAGAAGCTGCTCCGGCCTAGCCTGGCGGAGCTCCACGACGAGCTGGAAAAG|AAAGCGTCCCTGGATACTGGACAGATGGCGTTTACCTTGGCCCAACTTGAGTCCTTGGAGATTTGCCTGAAAGAAGCAGAAGAAAAGGCTAAAGCTTTATCTGAACAG___CTTTCAGTCTCTGAAGGAACAAAATCAAAACTGCTTGAACAAGTATCCCGGCTGGAGGAAAAACTGGAGGCTGTGGACCACAAGGAAGCCAGTGGGGGACCATATGAAAAAATGGTTCTTGTGAAAGACCAG___TGCATCCAGAAATTGCAAGCTG SAEDSLSDAAGVGVDGPNVSFQNGG?TVLSEGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELHDELEK|KASLDTGQMAFTLAQLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEASGGPYEKMVLVKDQCIQKLQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5489 CDC42::ERRFI1-DT ENSG00000070831.18::ENSG00000238290.1 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE FALSE TRUE 511 FALSE NA FALSE NA CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22052742:+ chr1:22379120-22427853:+ chr1:22379235:+ ERRFI1-DT ENSG00000238290.1 lncRNA + + chr1:8026738-8122702:+ chr1:8121474:+ chr1:8086798-8182762:+ chr1:8181534:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 34 1 2756 392 ENST00000344548.8 ENST00000445300.1 downstream upstream duplicates(3),mismatches(19) TCCGGCAGCCGAGGAGACCCCGCGCAGTGCTGCCAACGCCCCGGTGGAGAAGCTGAG|GTTTCCCCACTGCGAGCCCTTCGAGAACAATGTCATGTTGATCGATGGCAGTGACTCACACCAGAcCTTTCCATGCCTCCTCTGCAAGGACTCAAGAGAGTCGAGAGCAAAACCGTGCCATAGTTCCATAAGGAGGGCAAAGAGCTTTATCCACGCTGAGGAACAGGCGGATCATGCGGCTACAGCACTGGTCTTTACCTTTTAACTGCTTGATTCGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5491 CHD7::C8orf34 ENSG00000171316.14::ENSG00000165084.16 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE TRUE 512 TRUE 951 TRUE 352 CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60781430:+ chr8:61591299-61780587:+ chr8:61693989:+ C8orf34 ENSG00000165084.16 protein_coding + + chr8:68330955-68819023:+ chr8:68439499:+ chr8:69243190-69731258:+ chr8:69351734:+ chr8:60789000,chr8:60788999 chr8:68361890,chr8:68361886 NA NA chr8:61701559,chr8:61701558 chr8:69274125,chr8:69274121 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Family_of_unknown_function_(DUF5586)(95%) |DUF5586(78%) 7 10 8 70 20 ENST00000423902.7 ENST00000518698.6 downstream upstream duplicates(2),mismatches(5) GAAAAGGTCAAAGGCAAAAAAAGACCCGAAGGAACCGAAAGAACCCAAGGAGAAAAAAGAGCCCAAGGAACCCAAGACCCCGAAAGCCCCTAAGATTCCCAAAGAGCCAAAGGAAAAGAAAGCAAAAACTGCCACGCCAAAACCCAAATCCAGCAAAAAGTCAAG|GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATCCCATTTCTCATTGACCATCTTCAGTCTAAACAAGGGAACCGTGGACAACTTCAAAGAACTTTGTCTGGATCTGCAGCTCTATGGGCAGAAAGTGAAAAATCAG___AATCCAAAGGAACAAGAAGGGATTTCAGAAGCTATGATAAACC KRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSr|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5492 CHD7::C8orf34 ENSG00000171316.14::ENSG00000165084.16 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 951 TRUE 352 CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60743097:+ chr8:61591299-61780587:+ chr8:61655656:+ C8orf34 ENSG00000165084.16 protein_coding + + chr8:68330955-68819023:+ chr8:68439499:+ chr8:69243190-69731258:+ chr8:69351734:+ chr8:60789000,chr8:60788999 chr8:68361890,chr8:68361886 NA NA chr8:61701559,chr8:61701558 chr8:69274125,chr8:69274121 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Family_of_unknown_function_(DUF5586)(95%) |DUF5586(78%) 3 0 2 54 20 ENST00000423902.7 ENST00000518698.6 downstream upstream mismatches(1) TCCTGGTGTTGGCCTTGGAGACCCACAAGCAATCCAGGAACGACTGATACCTGGCCAACAACATCCTGGTCAACAGCCATCTTTTCAGCAGTTGCCAACCTGTCCTCCACTGCAGCCTCACCCGGGCTTGCACCACCAGTCTTCACCTCCACACCCTCATCACCAGCCTTGGGCACAGCTCCACCCATCACCCCAGAACACCCCGCAGAAAGTGCCTGTGCATCAG|GAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATCCCATTTCTCATgGACCATCTTCAGTCTAAACAAGGGAACCGTGGACAACTTCAAAGAACTTT PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQ|ELMTKLITETPDQPIPFLmDHLQSKQGNRGQLQRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5493 CHD7::C8orf34 ENSG00000171316.14::ENSG00000165084.16 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 951 TRUE 352 CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60781050:+ chr8:61591299-61780587:+ chr8:61693609:+ C8orf34 ENSG00000165084.16 protein_coding + + chr8:68330955-68819023:+ chr8:68468692:+ chr8:69243190-69731258:+ chr8:69380927:+ chr8:60789000,chr8:60788999 chr8:68361890,chr8:68361886 NA NA chr8:61701559,chr8:61701558 chr8:69274125,chr8:69274121 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |Family_of_unknown_function_(DUF5586)(72%) |DUF5586(72%) 0 1 0 49 15 ENST00000524602.5 ENST00000518698.6 downstream upstream none GCCCTTTCTAGAGAAACCAGTGCCGGATATGACTCAG|TGCCAAGGTCAGTAGAGCATCCAAAGTGGAACTGGAGGACTAAACCACAAAGCCGTGATTTTGA...ACATCCTTCAGGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATCTCTCTCGAA___GTATTGCAATTTCAGATGAACTCGATAAG___GAAACAGTGACATTTAAT PFLEKPVPDMTQ|cqgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5494 RDM1P5::LRRC37A11P ENSG00000263818.5::ENSG00000290925.1 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE TRUE 513 TRUE 952 TRUE 353 RDM1P5 ENSG00000263818.5 transcribed_processed_pseudogene + + chr17:39057019-39113190:+ chr17:39063546:+ chr17:37213272-37269443:+ chr17:37219799:+ LRRC37A11P ENSG00000290925.1 lncRNA + + chr17:39029906-39053215:+ chr17:39052865:+ chr17:37186159-37209468:+ chr17:37209118:+ chr17:39083139,chr17:39083137 chr17:39052510,chr17:39052505 NA NA chr17:37239392,chr17:37239390 chr17:37208763,chr17:37208758 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 2 6 2 41 16 ENST00000583447.5 ENST00000425901.2 downstream upstream none GTGACAAAACCTTGCTAGTGTGGGAGCTGAGCTCTGGACCCACGGCCGACGCTTTGCAT___GCTGTTTCTCTTGGAGGTGGTGCAGGAGGTTGAGGAAAGCACCTCTGATGAGCAGATAGCTGGAGGCTGTTCCCACAGTCATGTCTCAGCGAAGAAGTCGGAGTTCAGCAGCCATCAGAACCAAG|GGTAGAATGGAGGTTGCACTATTCGGGCCGGCCACTCTCCTACTGGCTGACAGGATGCTGCCCGAGATGAAACAGGGTGTGTGTGCACCACGGAGTCAGTCCAAGACTCCTGTTCTCACTCAGGGATTCTTCATTTCTTCTTCCTATTGCCTCCACTTCATGTTATTTTCTTCCCTTCCCATTTACAAGTAAAACTGACCAGAGCCCCAGGAATAAATGGTTTTCTTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5495 RDM1P5::LRRC37A11P ENSG00000263818.5::ENSG00000290925.1 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 952 TRUE 353 RDM1P5 ENSG00000263818.5 transcribed_processed_pseudogene + + chr17:39057019-39113190:+ chr17:39072591:+ chr17:37213272-37269443:+ chr17:37228844:+ LRRC37A11P ENSG00000290925.1 lncRNA + + chr17:39029906-39053215:+ chr17:39052865:+ chr17:37186159-37209468:+ chr17:37209118:+ chr17:39083139,chr17:39083137 chr17:39052510,chr17:39052505 NA NA chr17:37239392,chr17:37239390 chr17:37208763,chr17:37208758 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 4 8 16 ENST00000583447.5 ENST00000425901.2 downstream upstream none CGGAGTTCAGCAGCCATCAGAACCAAG___GGATTCAACTTGGTGTCATCTTCAAAGAGAGAAGACAGAAGGAGCgAGATTAGTGGAATCATTACAGCCTTTGTCACTCTGAGTCCAGATGGGATGAAAGTTCAGCCCAAACTTTCATTTTAGAG|GGTAGAATGGAGGTcGCACTATTCGGGCCGGCCACTCTCCTACTGGCTGACAGGATGCTGCCCGAGATGAAACAGGGTGTGTGTGCACCACGGAGTCAGTCCAAGACTCCTGTTCTCACTCAGGGATTCTTCATTTCTTCTTCCTATTGCCTCCACTTCATGTTATTTTCTTCCCTTCCCATTTACAAGTAAAACTGACCAGAGCCCCAGGAATAAATGGTTTTCTTGGCTTCCTCCTTGCTCCCATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5496 HINT3::NCOA7 ENSG00000111911.7::ENSG00000111912.20 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HINT3 ENSG00000111911.7 protein_coding + + chr6:125956770-125980244:+ chr6:125957178:+ chr6:126277916-126301390:+ chr6:126278324:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125874889:+ chr6:126102307-126253180:+ chr6:126196035:+ chr6:125958419,chr6:125958420 chr6:125856338,chr6:125856336 NA NA chr6:126279565,chr6:126279566 chr6:126177484,chr6:126177482 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Scavenger_mRNA_decapping_enzyme_C-term_binding(18%)|LysM_domain(100%),TLD(100%) DcpS_C(0%),HIT(0%)|LysM(100%),TLD(100%) 5 1 3 398 98 ENST00000229633.7 ENST00000368357.7 downstream upstream none CCGGCTTTGAAGTTCCTCACCGCGTCTCCTTCCCTCTCCCCAAAGCCTGGATCACCGCCCAGCGTCAGGCGAGGGGCGACGTCTCGAGGTAAAACGGAGGAGGTGCGGGACGCGGAGACTGCGCGGGCCCGGTAGCCCTGGAGAGGCCGAGGCTCTAGGCCGCGAGGGGCGGGTGCAATGGCGGAGGAACAGGTGAACCGCAGCGCCGGCCTGGCCCCCGACTGTGAGGCCTCGGCGACTGCAGAAACTACGGTTTCCTCAGTGGGGACCTGTGAAGCCGCTGcCA...ACAGCACCTGCGTGTTCTGCCGGATCGCGGGGCGGCAGGACCCGGGCACCGAACTCCTGCACTGCGAG|ATGACAATCAAAACAAAACACATGATAAAAAAGAGAAGAAGATGGTGGTTCAGAAGCCCCATGGGACTATGGAATACACT___GCTGGAAACCAGG STCVFCRIAGRQDPGTELLHCE|mtiktkhmikkrrrwwfrspmglwntllet NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5499 CDKN2B-AS1::MTAP ENSG00000240498.9::ENSG00000099810.21 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112395:+ chr9:21994138-22128102:+ chr9:22112394:+ MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21910759:+ chr9:21802635-21937650:+ chr9:21910758:+ chr9:22113071,chr9:22113051,chr9:22113071 chr9:21895304,chr9:21895281,chr9:21895301 NA NA chr9:22113070,chr9:22113050,chr9:22113070 chr9:21895303,chr9:21895280,chr9:21895300 NA NA sense sense unknown exon/splice-site intron duplication high none none none 1 2 1 8 17 ENST00000645223.3 unknown downstream upstream duplicates(1),mismappers(1) AAG___ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG|GTGTGCTACCAGTATCACAGTCCAACTCCAGAGTATTTCCATCGCTCTCCAAAATCACCATATCTATTAGCAACCACTCTTCAAGTCCGCATCCCCCAGCCTTTGGAAACCACAGATTTCCTCACCGCCTCTAAGAAATTGCCTATTTTGAG...CTCAAAGTAAAGGGTTGGAGGAAGATCTACCAACCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAGTCTCTCATAAAACAGACTTTAAcCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5517 SGCZ::TOX ENSG00000185053.14::ENSG00000198846.6 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SGCZ ENSG00000185053.14 protein_coding - - chr8:14084845-15238431:- chr8:14554732:- chr8:13942354-15095940:- chr8:14412241:- TOX ENSG00000198846.6 protein_coding - + chr8:58805412-59119147:- chr8:59003320:+ chr8:59717971-60031706:- chr8:59915879:+ chr8:14510794,chr8:14510810 chr8:58978662,chr8:58978646 NA NA chr8:14368303,chr8:14368319 chr8:59891221,chr8:59891205 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Sarcoglycan_complex_subunit_protein(15%)| Sarcoglycan_1(0%)| 0 3 0 1 3 ENST00000382080.6 unknown upstream upstream mismappers(1) GTTAACTTAGCCATGACAATATGGATATTGAAAGTTATGAATTTCACTGTG|GTGCGATTCAAGAAAATATTGTGTTACTATGACTTGTCAGCTGTTACAGTTTATTACACGCTGCATCCTCCATTCTCACCTGATCCTGGCCTATTCCCAGAGATCTATTAGCGATGGGATTTTAACGAGTGACATAAGGAAGAGGGCGCTACAGTTTTTATGGAAGTTCAGGATTCACGAGGATTGTGGAAAAGTACAACACAAGACTTTTTTTCAACAGTGAAAGACGGGGGGAAAAGGAA VNLAMTIWILKVMNFTV|vrfkkilcyydlsavtvyytlhppfspdpglfpeiy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-383 chr8:14853438-14853510:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5518 FAM149A::SORBS2 ENSG00000109794.14::ENSG00000154556.20 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM149A ENSG00000109794.14 protein_coding + + chr4:186104419-186175337:+ chr4:186105642:+ chr4:187025573-187096491:+ chr4:187026796:+ SORBS2 ENSG00000154556.20 protein_coding - + chr4:185585444-185956652:- chr4:185768141:+ chr4:186506598-186877806:- chr4:186689295:+ chr4:186144719,chr4:186144718,chr4:186144715 chr4:185763256,chr4:185763252,chr4:185763252 NA NA chr4:187065873,chr4:187065872,chr4:187065869 chr4:186684410,chr4:186684406,chr4:186684406 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 0 2 0 2 4 ENST00000389354.7 unknown downstream upstream none CCTTACGCTGCCTGACATCGGCGAGGAGGGGGCCTCGGACGGCGACTCCGGGGATGGCGAAGC|AGTGTTATATCCAGGTGTATGTGCCCAGCTCTCCTACCAGACTGTTCATCTGCCTGTGGCACGGCTCCTTGCACACA___GAAGAAACAACTGATTTCTATCTTTTAAGATTGCATTTCAAGACCATATCAAAGGCTTTGAATCTCTCACCAAGACTAACAATGA LTLPDIGEEGASDGDSGDGEa|vlypgvcaqlsyqtvhlpvarllahrrnn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5557 TSEN15::TTC33 ENSG00000198860.14::ENSG00000113638.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 516 TRUE 966 TRUE 354 TSEN15 ENSG00000198860.14 protein_coding + + chr1:184051651-184123978:+ chr1:184054863:+ chr1:184020785-184093112:+ chr1:184023997:+ TTC33 ENSG00000113638.14 protein_coding - - chr5:40512333-40755963:- chr5:40613381:- chr5:40512435-40756065:- chr5:40613483:- chr1:184093609,chr1:184093603,chr1:184093601 chr5:40651473,chr5:40651479,chr5:40651481 NA NA chr1:184062743,chr1:184062737,chr1:184062735 chr5:40651575,chr5:40651581,chr5:40651583 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sen15_protein(48%)| Sen15(1%)| 3 4 8 784 16 ENST00000644592.1 ENST00000636106.1 downstream downstream duplicates(3),low_entropy(1),mismatches(1) ATGATGGAATTAGATATAGGAGATGCCACCCAAGTTTATGTAGCGTTCTTGGTTTACCTGGACCTCATGGAAA___GCAAAAGCTGGCATGAAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCCTACCCCCATCACTGCTTCCCTCAGCCATAACAG|GGGTTCTCCACACTGGCTGAACACCAGAATCAACTGGGAGAATTTTCTTGAAAACACTAACGCCTAGGCCCTACACAGATCAATTAAACCAGAATCTCTGGACACAGGTGTGTTTAAAAAGTTCCCAGGAGCCATCGAGTTTGGGAATCACTGGGCTAGAGTCAAACC MMELDIGDATQVYVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNr|GSPHWLNTRINWENFLENTNA* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5558 TSEN15::TTC33 ENSG00000198860.14::ENSG00000113638.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 966 TRUE 354 TSEN15 ENSG00000198860.14 protein_coding + + chr1:184051651-184123978:+ chr1:184054863:+ chr1:184020785-184093112:+ chr1:184023997:+ TTC33 ENSG00000113638.14 protein_coding - - chr5:40512333-40755963:- chr5:40513069:- chr5:40512435-40756065:- chr5:40513171:- chr1:184093609,chr1:184093603,chr1:184093601 chr5:40651473,chr5:40651479,chr5:40651481 NA NA chr1:184062743,chr1:184062737,chr1:184062735 chr5:40651575,chr5:40651581,chr5:40651583 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sen15_protein(48%)| Sen15(1%)| 0 2 2 784 7 ENST00000644592.1 ENST00000636863.1 downstream downstream duplicates(3),mismatches(2) GGAGCTCCTTCGcGGGCCCCTGAGGACGCCTGGAaGGGCACTCACCCTAAG___TATCTAGcAATGATGGAATTAGATATAGGAGAcGtCACCCAAGaTTA...CTGGCATGAAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCCTACCCCCATCACTGCTTCCCTCAGCCATAACAG|GAGACCTTAAGATAGAAAAACTGCCAGGAGGGACCTGTAGGTCTGCTTTCTCCACTCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAGAGATTCCTGGACTAGATTCCTGAG...GCTACAGAAATGCCCCAACTGATGAATTTCGTCATGAAGCAGAGCCTCAGAGCAAAAGCACATCAGCTAAGCATGCCCCAGTATGAGTGGCTGAGTATGCCATATTAGTCTTTCATAGTCTACCATAGAAGACTTTCAATTTTTTG WHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNr|RP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5559 TSEN15::TTC33 ENSG00000198860.14::ENSG00000113638.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 966 TRUE 354 TSEN15 ENSG00000198860.14 protein_coding + + chr1:184051651-184123978:+ chr1:184054863:+ chr1:184020785-184093112:+ chr1:184023997:+ TTC33 ENSG00000113638.14 protein_coding - - chr5:40512333-40755963:- chr5:40604036:- chr5:40512435-40756065:- chr5:40604138:- chr1:184093609,chr1:184093603,chr1:184093601 chr5:40651473,chr5:40651479,chr5:40651481 NA NA chr1:184062743,chr1:184062737,chr1:184062735 chr5:40651575,chr5:40651581,chr5:40651583 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Sen15_protein(48%)| Sen15(1%)| 0 1 2 784 5 ENST00000644592.1 ENST00000636863.1 downstream downstream duplicates(2),mismatches(1) CTGGCATGAAGTAAACTGTGTAGGATTACCAGAACTCCAGCTCATCTGCCTTGTTGGTACTGAGATAGAAGGGGAGGGGTTACAGACTGTGGTGCCTACCCCCATCACTGCTTCCCTCAGCCATAACAG|GTGTTTCCGCTTTTGCTTCCTCCTCATTGTCTCTTGCCACCGTCATGTAAGAAGTGCCTTTCACCCTCCTGCCATGATT...TCATGTTTGGAGAACACGTCTCCAAAGAAATTCATCTGAACTTGATGCAGAGATTCCTGGACTAGATTCCTGAGAAATCTAATGTCAGCTACAGAAATGCCCCAACTGATGAATTTCGTCATGAAGCAGAGCCTCAGAGCAAA WHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNr|CFRFCFLLIVSCHRHVRSAFHPPAM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5562 GNA11::IL12RB1 ENSG00000088256.9::ENSG00000096996.16 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNA11 ENSG00000088256.9 protein_coding + + chr19:3094362-3123999:+ chr19:3094789:+ chr19:3094360-3123997:+ chr19:3094787:+ IL12RB1 ENSG00000096996.16 protein_coding - + chr19:18058995-18098944:- chr19:18086511:+ chr19:18169805-18209754:- chr19:18197321:+ chr19:3107460,chr19:3107461 chr19:18076003,chr19:18076001 NA NA chr19:3107458,chr19:3107459 chr19:18186813,chr19:18186811 NA NA sense antisense out-of-frame intron intron deletion/5'-5' high none G-protein_alpha_subunit(8%)| G-alpha(0%)| 1 0 7 310 14 ENST00000078429.9 unknown downstream upstream duplicates(3),mismatches(1) CCGCGTCGGCCGGGGCCGGGACGATGACTCTGGAGTCCATGATGGCGTGTTGCCTGAGCGATGAGGTGAAGGAGTCCAAGCGGATCAACGCCGAGATCGAGAAGCAGCTGCGGCGGGACAAGCGCGACGCCCGGCGCGAGCTCAAGCTGCTGCTGCTCGGT|TTTTTTTCTCATTGAACTCCGGGAGGTGGAAAAAATTTAGTGCATTTCACAGAAGAGAAAATCTAGACCAGAGGAAAGATGTCTAAGTTCGATCCCAGAAGCCATGACTGCCCATCTCCCATTTGACAGCAGGAAAGACTGAGGCACAGAGAGATGAAACCAACCCACACAGCAGGCCCACAGCTCTCCACACATACACGTGCCTCCACCCAGCAAGAGGAGCCGCCATGCCAGGGTCAGGGGACTCACCGCCCTGCCTGGACAGCAGGAAGAGG MTLESMMACCLSDEVKESKRINAEIEKQLRRDKRDARRELKLLLLg|ffsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1 Yes uveal melanoma, primary central nervous system melanocytic neoplasms epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 5567 NPR3::LMBRD2 ENSG00000113389.16::ENSG00000164187.7 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NPR3 ENSG00000113389.16 protein_coding + + chr5:32689070-32791724:+ chr5:32710783:+ chr5:32689176-32791830:+ chr5:32710889:+ LMBRD2 ENSG00000164187.7 protein_coding - - chr5:36098407-36151887:- chr5:36115120:- chr5:36098509-36151989:- chr5:36115222:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Receptor_family_ligand_binding_region(2%)|LMBR1-like_membrane_protein(12%) ANF_receptor(23%)|LMBR1(12%) 0 3 2 100 159 ENST00000326958.5 ENST00000296603.5 downstream downstream none GAGCCATCTGCACTGGGACCTTGGTCCTTGTTCCCTGACCTTGCGCCGAGGGACCAGGAAGGTCAGGTGCTCGCCCCGCGTCGGTGCTTCAGGAGGGAATGTGGCCAGAACGAGAAAG|GCTATTTTGCCGTTTGACACCTCCTTTATGTCTTAATTTCTTGGGTTTGACCCATATGGATTCATCTATCTCTCACAAGAATACTCAACCAACTGCTTATACATCT___ATTATGGGTTCCATGAAAGTTTTATCCTTTATTGCAGATGGATTCTATATATATTATCCTATGTTGG EPSALGPWSLFPDLAPRDQEGQVLAPRRCFRRECGQNEK|gyfav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5570 SLC12A7::RAI14 ENSG00000113504.21::ENSG00000039560.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 969 TRUE 355 SLC12A7 ENSG00000113504.21 protein_coding - - chr5:1050384-1112063:- chr5:1111868:- chr5:1050499-1112178:- chr5:1111983:- RAI14 ENSG00000039560.14 protein_coding + + chr5:34656328-34832612:+ chr5:34711512:+ chr5:34656433-34832717:+ chr5:34711617:+ chr5:1098822,chr5:1098830 chr5:34698376,chr5:34698368 NA NA chr5:1098937,chr5:1098945 chr5:34698481,chr5:34698473 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 1 0 3 78 10 ENST00000264930.10 unknown upstream upstream mismatches(1) GTCGGCTGCAGGCGGCCATGCCCACCAACTTCACCGTGGTGCCCGTGGAGGCTCACGCCGACGGCGGCGGGGACGAGACTGCCGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|TTACTTCAGGCCATCTGGATGTATATGTGCAAGTCACAGGGGATGCGATGGCTTGGCCTGGGCTCAGAGGCCTGACAACAGGGATGGAACCCTCATGAATGAGATTATTGCCCTTATTAAAAAGGCCCCAGAGAGCTACTTCATCCCTTCTGCCATATGAGGACACAGCAAGAAGACAGCTGTCTATGAACCAGGAATCAGGCTTTCACCAGACACCGACTCTGAC MPTNFTVVPVEAHADGGGDETAERTEAPGTPEGPEPERPSP|vtsghldvyvqvtgdamawpglrglttgmeps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5571 SLC12A7::RAI14 ENSG00000113504.21::ENSG00000039560.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 969 TRUE 355 SLC12A7 ENSG00000113504.21 protein_coding - - chr5:1050384-1112063:- chr5:1111868:- chr5:1050499-1112178:- chr5:1111983:- RAI14 ENSG00000039560.14 protein_coding + + chr5:34656328-34832612:+ chr5:34733116:+ chr5:34656433-34832717:+ chr5:34733221:+ chr5:1098822,chr5:1098830 chr5:34698376,chr5:34698368 NA NA chr5:1098937,chr5:1098945 chr5:34698481,chr5:34698473 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 0 1 0 78 5 ENST00000264930.10 ENST00000511652.5 upstream upstream none CGAGCGGACGGAGGCTCCGGGCACCCCCGAGGGCCCCGAGCCCGAGCGCCCCAGCCCGG|GAATGGATCAGAGGAGGAATATCAGAGCAAGATTCCATGAGA...AATTTAACTTCCCAGAGCACAGGGCTTTGTAGTTCTTGTTCACAGGCCTGTCCAATGCATAGAAGGTGCTCAATGAATACTGCTAAATAAGCGAATGAATG ERTEAPGTPEGPEPERPSP|gmdqrrnirarfhe NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5574 DROSHA::PDZD2 ENSG00000113360.17::ENSG00000133401.16 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DROSHA ENSG00000113360.17 protein_coding - - chr5:31400494-31532196:- chr5:31526318:- chr5:31400601-31532303:- chr5:31526425:- PDZD2 ENSG00000133401.16 protein_coding + - chr5:31639131-32110932:+ chr5:31682877:- chr5:31639238-32111038:+ chr5:31682984:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS intron duplication/5'-5' medium none none none 41 6 13 714 21 ENST00000344624.8 unknown upstream downstream duplicates(8),mismatches(3) CCCATGCCTCCGTCAGCGCAAGGCCCTCTTCCCCCCTGCCCAATCAGGCCGCCTTTCCCCAACCACCAGATGAGGCACCCCTTCCCAGTTCCTCCTTGTTTTCCTCCCATGCCACCACCAATGCCTTGTCCTAATAACCCCCCAGTCCCTGGGGCACCTCCTGGACAAGGCACTTTCCCCTTCATGATGCCCCCTCCCTCCATGCCTCATCCCCCGCCCCCTCCAGTCATGCCGCAGCAGGTTAATTATCAGTACCCTCCGGGCTATTCTCACCACAACTTCCCACCTCCCAGTTTTAATAGTTTCCAGAACAACCCTAGTTCTTTCCTGCCCAGTGCTAATAACAGCAGTAGTCCTCATTTCAGA|CTTATGGCTGGAAAGTCAGGGGAAAGGGAGGGGTGGAGGATACAAAAGGTACAAGGTAGCTTGTGGTGGAAATGGAGCGTCTTGGTCTACGTAAAAATTCACCTGCAGGGCTTTTGAGGGTTAGCTGTCCTGAAATCCCAAAATGTGTAAACCATGTACACACACACACACACACACACACACACACACACACACACACACACACAGCCGAAAGACTGAGAATGCGCTAGTTCTATTTAATCTTGGAGGAGAAAATTAACA PMPPSAQGPLPPCPIRPPFPNHQMRHPFPVPPCFPPMPPPMPCPNNPPVPGAPPGQGTFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSHHNFPPPSFNSFQNNPSSFLPSANNSSSPHFR|lmagksgeregwriqkvqgslwwkwsvlvyvkihlqgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE drosha ribonuclease III 1 Yes Wilms tumour, NSCLC, bladder carcinoma epithelial, other TSG amplification, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 5585 TRIP12::LRP1B ENSG00000153827.15::ENSG00000168702.18 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TRIP12 ENSG00000153827.15 protein_coding - - chr2:229763837-229923239:- chr2:229858772:- chr2:230628553-230787955:- chr2:230723488:- LRP1B ENSG00000168702.18 protein_coding - + chr2:140231423-142131016:- chr2:140676488:+ chr2:140988992-142888585:- chr2:141434057:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none none none 3 0 1 458 0 ENST00000453485.2 unknown upstream upstream none GTCTAATACTACTTCTGAACTGTCAAGGGGACACCTTTCTAAAAG___AAGCTGCAGTTCATCATCTGCTGTGATAGTTaCACAACCAGAGGATaCAGACAGAG...CAGGAAGAGTGGGGCCACTGGCGGTTCACGGAGTCAGAAAAGAAAAAGGACAGAGAGTTCTTGTGTAAAGAGTGGCTCCGGGTCTGAATCAACTGGTGCAG...CTAAAGTTAGCCTTCCTAAAACAAAACTGTCTCTTCCAGGGTCTTCTAAGTCAGAGACATCAAAACCTGGACCTTCTGGATTACAGGCCAAATTAGCAA|ATTATCCCATAAGACTGCAAGGCATGCAATCATAAAG___ATCTCAGCCACAGAAGCTAAGAGAA kvslpktklslpgSSKSETSKPGPSGLQAKLA|nypirlqgmqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5594 ELP2::MOCOS ENSG00000134759.14::ENSG00000075643.6 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 518 FALSE NA FALSE NA ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36146381:+ chr18:33709407-33760520:+ chr18:33726344:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36248922:+ chr18:33767460-33852120:+ chr18:33828885:+ chr18:36147411,chr18:36147515,chr18:36147407,chr18:36147514 chr18:36231547,chr18:36231817,chr18:36231540,chr18:36231813 NA NA chr18:33727374,chr18:33727478,chr18:33727370,chr18:33727477 chr18:33811510,chr18:33811780,chr18:33811503,chr18:33811776 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none WD_domain__G-beta_repeat(43%)|MOSC_N-terminal_beta_barrel_domain(40%),MOSC_domain(100%) WD40(73%)|MOSC(100%),MOSC_N(6%) 1 1 5 293 509 ENST00000358232.11 ENST00000261326.6 downstream upstream duplicates(5) GTCAGGAGTTTGGCTAGAACAG___GTTCGAGTAGGTGAAGTAGGTGGGAATACTTTGGGATTTTATGATTGCCAGTTCAATGAAGATGGCTCCATGATCATTGCTCATGCTTTCCACGGAGCGTTGCACCTTTGGAAACAGAATACAGTTAACCCA|GGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTGTGCTGACAG___AGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGT...AAGGTATTACATTTTGAATTGGTTCGTAGAGAACAGGAACCCTGGCTTACCCTTGCACACATCAAAACAGCCCATGAACTGCACTTACGGGTGACTTGCTG SGVWLEQVRVGEVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNP|gwsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5597 ZSWIM6::C5orf64 ENSG00000130449.6::ENSG00000178722.15 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZSWIM6 ENSG00000130449.6 protein_coding + + chr5:61332258-61546172:+ chr5:61538971:+ chr5:60628085-60841999:+ chr5:60834798:+ C5orf64 ENSG00000178722.15 lncRNA + + chr5:61610424-61793401:+ chr5:61633848:+ chr5:60906251-61089228:+ chr5:60929675:+ chr5:61539506,chr5:61539500 chr5:61631722,chr5:61631713 NA NA chr5:60835333,chr5:60835327 chr5:60927549,chr5:60927540 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none SWIM(100%)| 0 3 1 59 6 ENST00000252744.6 ENST00000665180.1 downstream upstream duplicates(3) CTAAGCCACATTGAGTCCCAGCAGTGTGAGCTGGCATCCACCATGCTAACTGCAGCCAAAG|AGTTTGATTACTCAGTCAAAACCTAAGTATCCTGTTGGGAGAAGAACACTCATTTTAGTGGCACTGTTCTATTCTTTGGATGAATTGAATAGTTACTAATCCAGCCACAGAAGAAAGACACAG___GAGAGGC...GCCAATACTATGTGAAaGGACATCTTCTGGGGcGTCTTCCTCCTTTTCTTCCGGATTCTTTGTGTCTaAATGTGATGCCTGGAGATGCAACAGCAGTCTCA LSHIESQQCELASTMLTAAK|efdysvkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5607 XXYLT1::LINC02028 ENSG00000173950.16::ENSG00000230102.8 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195270555:- chr3:194789013-194991888:- chr3:194991284:- LINC02028 ENSG00000230102.8 lncRNA - - chr3:194005259-194071025:- chr3:194023207:- chr3:193723048-193788814:- chr3:193740996:- chr3:195240621,chr3:195240626 chr3:194060717,chr3:194060719 NA NA chr3:194961350,chr3:194961355 chr3:193778506,chr3:193778508 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none none none 1 0 0 86 1 ENST00000310380.11 ENST00000626476.3 upstream downstream none GACTACCACCTGCTGATGATGTTCACCAAGGCGGAGCACAATGCCGCGCTGCAGGCCAAGGCCCGCGTCGCGCTGCGCTCACTGCTGCGCCTCGCCAAGTT...GCCGCCCGCCGCTGGCTTCAAGTGCAAG|GTCCTTGGAACAGGAGAAAGGGTTGGAAAACAAAGATCACTTTTCTCTGGCCAAATGGAATCACCCAACAAAG PPAAGFKCK|vlgtgervgkqrslfsgqmespnk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5614 ASAP1::RNF111 ENSG00000153317.15::ENSG00000157450.16 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 519 TRUE 975 TRUE 356 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130401885:- chr8:131064350-131455920:- chr8:131414131:- RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59066764:+ chr15:59157374-59389618:+ chr15:59358963:+ chr8:130393181,chr8:130393174,chr8:130393155,chr8:130393134 chr15:59060319,chr15:59060319,chr15:59060319,chr15:59060319 NA NA chr8:131405427,chr8:131405420,chr8:131405401,chr8:131405380 chr15:59352518,chr15:59352518,chr15:59352518,chr15:59352518 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Ring_finger_domain(100%) |zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_11(100%),zf-RING_2(100%) 43 41 73 237 186 ENST00000518721.6 ENST00000348370.9 upstream upstream duplicates(34),mismappers(14),mismatches(11) CGCGAGCGCCCGGCCGAACCCGCGATGGAATAATGCCCAGCGGCCCGCCAGGTCCCG___...CGCCGTGTTGATCAGGATGGTCTCAAACTCCTGACCTCAG___GTCGTTTTCTGATGTGACGGCTGAGACATGAGATCTTCAGCCTCCAGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG|ATGACTCAAGGAGAACTACATCTAGTGCTGTAACGGAAACTGGCCCTCCTGCAATGCCAAGGTTACCTTCCTGCTGTCCCCAGCACTCACCATGTGGAGGGTCGTCACAGAACCACCATGCATTAGGACATCCTCATACAAGTTGCTTTCAGCAGCATGGTCACCATTTTCAACATCATCACCACCACCACCATACTCCCCACCCAGCTGTCCCAGTTTCTCCTTCCTTTAGTGATCCTGCTTGCCCTG MRSSASRLSSFSSRDSLWNr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5615 ASAP1::RNF111 ENSG00000153317.15::ENSG00000157450.16 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 975 TRUE 356 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130401885:- chr8:131064350-131455920:- chr8:131414131:- RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59075954:+ chr15:59157374-59389618:+ chr15:59368153:+ chr8:130393181,chr8:130393174,chr8:130393155,chr8:130393134 chr15:59060319,chr15:59060319,chr15:59060319,chr15:59060319 NA NA chr8:131405427,chr8:131405420,chr8:131405401,chr8:131405380 chr15:59352518,chr15:59352518,chr15:59352518,chr15:59352518 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Ring_finger_domain(100%) |zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_11(100%),zf-RING_2(100%) 0 1 6 237 272 ENST00000518721.6 ENST00000348370.9 upstream upstream duplicates(1),mismappers(1) GAGCGCCCGGCCGAACCCGCGATGGAATAATGCCCAGCGGCCCGCCAGGTCCCG___GTCGTTTTCTGATGTGACGGCTGAGACATGAGATCTTCAGCCTCCAGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG|CAGGCATTGCCAGTGGACCTGAGCAACAGTGGTATCAGAAGTCATGGAAGTGGCAGTTTTCATGGAGCATCTGCATTTGACCCCTGCTGCCCTGTTTCTTCCTCCCGAGCTGCAATCTTTGGCCATCAGGCCGCTGCTGCTGCCCCAAGTCAACCTTTATCATCAATAGATGGCTATGGATCAAGCATGGTTGCGCAGCCCCAGCCCCAGCCCCCTCCACAGCCCTCTCTCTCATCATGTCGACATTACATGCCACCCCC...CATCCTGTGGCACCCCCACCACCAACTCACTTAGCCAGTACAGCTGCACCAATCCCTCAGCATCTTCCTCCTACACACCAGCCAATTTCGCACCATATTCC MRSSASRLSSFSSRDSLWNr|rhcqwt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5616 ASAP1::RNF111 ENSG00000153317.15::ENSG00000157450.16 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 975 TRUE 356 ASAP1 ENSG00000153317.15 protein_coding - + chr8:130052104-130443674:- chr8:130392786:+ chr8:131064350-131455920:- chr8:131405032:+ RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59066764:+ chr15:59157374-59389618:+ chr15:59358963:+ chr8:130393215,chr8:130393209 chr15:59060328,chr15:59060319 NA NA chr8:131405461,chr8:131405455 chr15:59352527,chr15:59352518 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none |Ring_finger_domain(100%) |zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_11(100%),zf-RING_2(100%) 0 2 1 3 186 unknown ENST00000348370.9 downstream upstream duplicates(2) GGTTGCACAAGAAGCCAGCACCTGCTTCTGTGAGGGCCTCAGGTTGCTTCAACTCGTGGCAGAAGGGGAAGGGGAGCCAGCATGTGCAGAGATCAGATG|ATGACTCAAGGAGAACTACATCTAGTGCTGTAACGGAAACTGGCCCTCCTGCAATGCCAAGGTTACCTTCCTGCTGTCCCCAGCACTCACCATGTGGAGGGTCGTCACAG...CACCACCACCACCATACTCCCCACCCAGCTGTCCCAGTTTCTCCTTCCTTTAGTGATCCTGCTTGCCCTGTGGAAAGACCTCCACAAGTACAAGCACCTTGTGGAGCAAATAGTAGTTtTGGTACCAGCTATCATGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5617 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ LINC00824 ENSG00000254275.6 lncRNA - + chr8:128405269-128564679:- chr8:128489589:+ chr8:129417515-129576925:- chr8:129501835:+ chr8:127995752,chr8:128110709,chr8:127995746 chr8:128448289,chr8:128412616,chr8:128448280 NA NA chr8:129007998,chr8:129122955,chr8:129007992 chr8:129460535,chr8:129424862,chr8:129460526 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 18 10 25 1051 108 ENST00000667305.1 unknown downstream upstream duplicates(13),low_entropy(1),mismatches(2) ATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___...CTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG___AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|AGAAAAATGAGCCTCCTGTCTGAAAGAGGGAAATGAGGAAGAGCAGATTGCTGAGTCTGAGGTTTGTGCTGCCTATGTGCTGTTGAAGAGTCACCTGGAAGCAGATGCTGTGGGGAAGGGAACAGCTGGACTCATCAACATCATGGTTTTCTTCTTCTAGCTCCTGATTGATCTCTACAATTTTATTCAGTTGTATGATTCCTTTATATAATTCAACAAGACCTACATTGCATAGAAGATTGTTTTCCCAAAGTGGAGAGGATCTTCACAGAGAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5618 BRWD3::POF1B ENSG00000165288.11::ENSG00000124429.18 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 520 FALSE NA FALSE NA BRWD3 ENSG00000165288.11 protein_coding - - chrX:80669503-80809877:- chrX:80808539:- chrX:79925002-80065376:- chrX:80064038:- POF1B ENSG00000124429.18 protein_coding - - chrX:85277396-85379717:- chrX:85282317:- chrX:84532402-84634722:- chrX:84537323:- chrX:80799268,chrX:80800187,chrX:80799277 chrX:85316311,chrX:85294562,chrX:85316312 NA NA chrX:80054767,chrX:80055686,chrX:80054776 chrX:84571317,chrX:84549568,chrX:84571318 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 6 20 7 34 46 ENST00000373275.5 ENST00000262753.9 upstream downstream duplicates(7) AGCTGTATTACCTGATCGCTAGGTTCTTGCAGTCTGGACCCTGCAACAAATCCGCTCAG___GTGCTAGTGCAGGAGCTCGAGGAGCATCAG___CTGATTCCGCGCCGCTTAGATTGGGAGGGGAAAGAGCACCGAAGAAGCTTCGAGGATCTG|GTACAGGACACAATATCCAATCCTAGGCCTCCTATATGATGACTACGAATATATACCACCAGGTAGTGAAACACAGACTATTGTGATTGAGAAAACAGAAGACAAATACACTTGT___CCATGAATGGATCCACTTTAAAGTATTACAACTCAAAGCCGTTTTTTTTgTGTGTGTGTGTCTCTGCATTAGTACTTTGTTATTTTTCCATCACTAAAGGCCAATCAGAATTTGGAACCATGCTGCTACCCAAGAAATCTAATGGAATGAATTAGTTCTGTAGATGACAATTTCTTCACCCATTTATGAGACCTAAATCTTTTCCATAACACTCATGTATTCAGTATAACAACATACTAACTGAAAGAGGG LYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDL|vqdtisnprppi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5621 RNF111::LINC00964 ENSG00000157450.16::ENSG00000249816.8 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59058550:+ chr15:59157374-59389618:+ chr15:59350749:+ LINC00964 ENSG00000249816.8 lncRNA + - chr8:124823702-124962531:+ chr8:124900811:- chr8:125835944-125974773:+ chr8:125913053:- chr15:59060293,chr15:59060289,chr15:59060286 chr8:124907129,chr8:124907128,chr8:124907128 NA NA chr15:59352492,chr15:59352488,chr15:59352485 chr8:125919371,chr8:125919370,chr8:125919370 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none E3_ubiquitin-protein_ligase_Arkadia_N-terminus(100%)| RNF111_N(100%),RRM_1(100%),RRM_5(100%),SAP(100%)| 7 11 13 210 38 ENST00000348370.9 unknown downstream downstream duplicates(3),mismatches(3) GAGATTGTAACAGTTGGAGAAAGCTATCG___GTCTCGTTCAACCCTTGGACACTCCAGATCTCATTGGAGCCAGGGTTCaAGaTCTCATGCAAGTCGGCCACAGGAGCCACGGAACCGCAGTAGGATTTCTACTGTTATACAGCCCTTGAGGCAGAATGCAGCAGAAGTTGTGGACCTTACCGTTGATGAAGATG___AACCTACTGTAGTACCAACCACTTCTGCAAGAATGGAATCACAAGCTACTAGCGCTTCCATTAACAATTCAAATCCATCTACCTCTGAGCAGGCCTCTGATACTGCTTCAGCTGTCACCAGTAGCCAACCTTCCACAGTGTCAGAGACTTCAGCTACTCTTACAAGCAATAGTACCACTGGCACTTCTATAGGAG|TTTGTCTCTTCCAGAATCAAAACTGTAAAACTACAAATTGTTCTTCAAATGGAGCCCCAGATGCAGTCTATGACTAAGATCAACCACAGACCCTTGGACcGGCCTGCTAGCCCATGCTCCGATGTTGATGACATCGAAGGCACCCCTCCTGAGGAAATCTGAACTGCGAGACCCCTCCTATGCCCCAATTCAGCAGGAAGCAGTTAGAACGGTCATCGGCCAACTTCCCCAACAGCACTTGGGTTTTCCTGTTGAGAGGGGGGATTGAGAGACAGGACTAGCTGGATTTCCTAGGCTGACTAAGAATTCCTAAGCCTAGCTGGGGAA EIVTVGESYRSRSTLGHSRSHWSQGSrSHASRPQEPRNRSRISTVIQPLRQNAAEVVDLTVDEDEPTVVPTTSARMESQATSASINNSNPSTSEQASDTASAVTSSQPSTVSETSATLTSNSTTGTSIG|vclfqnqnckttncssngapdavyd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5622 ASPH::LINC02254 ENSG00000198363.18::ENSG00000259664.3 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASPH ENSG00000198363.18 protein_coding - - chr8:61500556-61714640:- chr8:61518032:- chr8:62413115-62627199:- chr8:62430591:- LINC02254 ENSG00000259664.3 lncRNA - + chr15:97339693-97523442:- chr15:97477243:+ chr15:97882923-98066672:- chr15:98020473:+ chr8:61517839 chr15:97468947 NA NA chr8:62430398 chr15:98012177 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Aspartyl/Asparaginyl_beta-hydroxylase(47%),Aspartyl_beta-hydroxylase_N-terminal_region(100%),Tetratricopeptide_repeat(100%)| Asp-B-Hydro_N(100%),Asp_Arg_Hydrox(35%),TPR_16(100%),TPR_6(100%),TPR_8(100%)| 3 12 15 1247 44 ENST00000379454.9 unknown upstream upstream duplicates(9),low_entropy(2),mismatches(3) AAAGCCAAAGGTCTCTTCCTGCCTGAGGATGAAAACCTGAGGGAAAAAGGGGACTGGAGCCAGTTCACGCTGTGGCAGCAAG___GAAGAAGAAATGAAAATGCCTGCAAAGGAGCTCCTAAAACCTGTACCTTACTAGAAAAGTTCCCCGAGACAACAGGATGCAGAAGAGGACAG|AACTTTGAATATATTGGCTCATCGACTCTAACTTTCAAAGTTTCCAATGAGAAATCTGCTGATATTCTTGAGGATCATTTACATGTAAAGATTCACTTCACTCTGGCTGCTTGGAAGATTTGTTCTCTGTtCTTTGTTTTTAACAGTTTGATTATGATATGTCTCAGTTTGTGTTCATCCTACTTATTGCtCATTGAACTTCCTGGATGTTGATAAAATAGTCCCCTCTTATTCTTGGAGGATACATTCAAAGGGCCCCA KAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQ|nfeyigsstltfkvsneksadiledhlhvkihftlaawkicslffvfnslimiclslcssylllielpgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5623 POLR1A::AFF3 ENSG00000068654.17::ENSG00000144218.21 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 977 TRUE 357 POLR1A ENSG00000068654.17 protein_coding - - chr2:86020216-86106155:- chr2:86048884:- chr2:86247339-86333278:- chr2:86276007:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99597955:- chr2:100161881-100808890:- chr2:100214417:- chr2:86047686,chr2:86047688 chr2:99600546,chr2:99600549 NA NA chr2:86274809,chr2:86274811 chr2:100217008,chr2:100217011 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none RNA_polymerase_Rpb1__domain_1(100%),RNA_polymerase_Rpb1__domain_2(100%),RNA_polymerase_Rpb1__domain_3(100%),RNA_polymerase_Rpb1__domain_4(34%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(3%),AF4_interaction_motif(100%) RNA_pol_Rpb1_1(100%),RNA_pol_Rpb1_2(100%),RNA_pol_Rpb1_3(100%),RNA_pol_Rpb1_4(3%)|AF-4(0%),AF-4_C(100%),AF4_int(100%) 4 2 13 125 7 ENST00000263857.11 ENST00000672756.2 upstream downstream duplicates(1) TCAAGAGGCAACGTATCATTGAAGAATCCACCCACTGCGGGCCCCAG___GCTGTCAGGGCTGCATTAAACCTGCCAGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAAGTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAG|GTGCCTACGAGGTCCATGGCAGCGGGTACTTGAAGGATTTAGATGAAGCAGGGACCAGAGTGCATGATGGAGAGCTG___GCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTG KRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINK|vptrsmaagt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 5624 POLR1A::AFF3 ENSG00000068654.17::ENSG00000144218.21 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 522 TRUE 977 TRUE 357 POLR1A ENSG00000068654.17 protein_coding - - chr2:86020216-86106155:- chr2:86048884:- chr2:86247339-86333278:- chr2:86276007:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99594289:- chr2:100161881-100808890:- chr2:100210751:- chr2:86047686,chr2:86047688 chr2:99600546,chr2:99600549 NA NA chr2:86274809,chr2:86274811 chr2:100217008,chr2:100217011 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RNA_polymerase_Rpb1__domain_1(100%),RNA_polymerase_Rpb1__domain_2(100%),RNA_polymerase_Rpb1__domain_3(100%),RNA_polymerase_Rpb1__domain_4(34%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(3%),AF4_interaction_motif(100%) RNA_pol_Rpb1_1(100%),RNA_pol_Rpb1_2(100%),RNA_pol_Rpb1_3(100%),RNA_pol_Rpb1_4(3%)|AF-4(0%),AF-4_C(100%),AF4_int(100%) 1 3 12 125 17 ENST00000263857.11 ENST00000672756.2 upstream downstream duplicates(3) CTGCATTAAACCTGCCAGAAGCCGCATCATATGATGAGGTCCGAGGAAAATGGCAGGATGCCCATCTGGGCAAGGACCAGAGGGATTTTAACATGATTGATCTGAAGTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAG|GCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTGATCCAAAATGAAAGCCACGGGTCAGAGAGCAATCAGTACTACAACCCGGTGAAAGAGGACGTCCAGGACTGTGGGAAAGTCCCCGACGTTTGCCAGCCCAGCCTGAGAGAGAAGGAGATCAAGAGCACTTGCAAGGAGGAGCAAAGGCCAAGGACAGCCAACAAGGCCCCTGGGAGTAAAGGCGTGAAGCAGAAGTCCCCGCCCGCGGCCGTGGCCGTGGCGGTGAGCGC ALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINK|AEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCGKVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 5630 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 979 TRUE 358 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127884076,chr8:127884082,chr8:127884125,chr8:127884398,chr8:127884445,chr8:127884453,chr8:127958584 chr8:127419979,chr8:127419979,chr8:127419979,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127414103 NA NA chr8:128896322,chr8:128896328,chr8:128896371,chr8:128896644,chr8:128896691,chr8:128896699,chr8:128970830 chr8:128432224,chr8:128432224,chr8:128432224,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128426348 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 4 8 445 152 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(4) CGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAA...GCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGGGTGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5631 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 979 TRUE 358 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127884076,chr8:127884082,chr8:127884125,chr8:127884398,chr8:127884445,chr8:127884453,chr8:127958584 chr8:127419979,chr8:127419979,chr8:127419979,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127414103 NA NA chr8:128896322,chr8:128896328,chr8:128896371,chr8:128896644,chr8:128896691,chr8:128896699,chr8:128970830 chr8:128432224,chr8:128432224,chr8:128432224,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128426348 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 2 8 1712 10 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(5) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGC...TGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5632 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 979 TRUE 358 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127884076,chr8:127884082,chr8:127884125,chr8:127884398,chr8:127884445,chr8:127884453,chr8:127958584 chr8:127419979,chr8:127419979,chr8:127419979,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127414103 NA NA chr8:128896322,chr8:128896328,chr8:128896371,chr8:128896644,chr8:128896691,chr8:128896699,chr8:128970830 chr8:128432224,chr8:128432224,chr8:128432224,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128426348 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 1 7 1712 152 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(4) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5633 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 979 TRUE 358 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 10 1712 7 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(4) CCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTTGTGCTGATGAACATGGTCcCCTTGAAAGGTGTGTTGAATATGGCAGcGCCAG...CTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGAC___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5634 RBM6::TRAIP ENSG00000004534.15::ENSG00000183763.9 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBM6 ENSG00000004534.15 protein_coding + + chr3:49940007-50100045:+ chr3:49940225:+ chr3:49977440-50137478:+ chr3:49977658:+ TRAIP ENSG00000183763.9 protein_coding - + chr3:49828601-49856574:- chr3:49845807:+ chr3:49866034-49894007:- chr3:49883240:+ chr3:49942106,chr3:49942107,chr3:49942108 chr3:49844404,chr3:49844404,chr3:49844402 NA NA chr3:49979539,chr3:49979540,chr3:49979541 chr3:49881837,chr3:49881837,chr3:49881835 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 0 9 3 156 16 ENST00000442092.5 unknown downstream upstream none GCGGCGCGGCGCCTTTGTGGTAGCAGTGGCCCCGCGCGGAGGAAGTTCCGGTGTCCGCGGCGCTGGGTCGGTGGCGGAGGCTGAGGAGAAGGAGGAGCGGGCCGTGGAGGCTTCGCCGCCTAG|GGAAGACACTACTTAAAACTGGGAGCAGTTACCATGACGATGAACATGCTTGCTCTAAGCACAAAAGCTCCATGTTCCTGAAGCAGTGAGGTTCCAAGGACATCATGACACCCTGGGGCCAGAGCCAAATGAACTCTGATCTGACAGATATCCAGCAAATTAACCCTCAGAGTCCAGGGATCATTTGTGAACCCAAATCCAACTTCCTCAAGAGTTCTCTGCCAACGCAGCCTGCTTGCACACAAAAAAAGCTAAATTTTAGATTAGGAGGGGAAGCAGTTAGACGTATAGGAGGGAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5637 SMURF2::KPNA2P3 ENSG00000108854.16::ENSG00000266820.1 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64571798:- chr17:62538400-62658425:- chr17:62567916:- KPNA2P3 ENSG00000266820.1 transcribed_unprocessed_pseudogene - - chr17:64749918-64758603:- chr17:64754654:- chr17:62746036-62754721:- chr17:62750772:- chr17:64570354 chr17:64757163 NA NA chr17:62566472 chr17:62753281 NA NA sense sense stop-codon CDS/splice-site exon/splice-site duplication high none C2_domain(100%),WW_domain(100%)| C2(100%),WW(100%)| 2 3 4 201 120 ENST00000262435.14 ENST00000584190.1 upstream downstream duplicates(2) AAGAACTACGCAATGGGAGCGCCCAACACG___ACCGGCATCCGAATATTCTAGCCCTGGCAGACCTCTTAGCTGCTTTGTTGATGAGAACACTCCAATTAGTG...GGACAGTCTTCAGATCCCAGGCTGGCAGAGAGGAGAGgCAGGTCACAACGACATAGAAATTACATGAGCAGAACACATTTACATACTCCTCCAGACCTACC...AACAAGGCCAGGTGTATTTCTgACATACACAGACTGGTGTGAGCACATGGCATGATCCAAGAGTGCCCAG___GGATCTTAGCAACATCAATTGTGAAGAGCTTGGTCCATTGCCTCCTGGATGGGAGATCCGTAATACGGCAACAGGCAGAGTTTATTTCGTTGACCATAACAACAGAACAACACAATTTACAGATCCTCGGCTGTCTGCTAACTTGCATTTAGTTTTAAA|ACTCCTGCCCTAAGAGCCATAGGGAATATCGTCACTGGTACAGATGAACAGACTCAGGTTGTGATTGATGCAGGAGCACTCGCCGTCTTTCCCAGCCTGCTCACCAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCAAACATCACAGCCAGCCGCCAGGACCAGATACAGCAAGTTGTGAATCATGGATTAGTCCCATTCCTTGTCAGCGATCTCTCTAAG___ATTTTGAGACACAAAAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5638 SMURF2::ARHGAP27P1-BPTFP1-KPNA2P3 ENSG00000108854.16::ENSG00000215769.8 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64571798:- chr17:62538400-62658425:- chr17:62567916:- ARHGAP27P1-BPTFP1-KPNA2P3 ENSG00000215769.8 lncRNA - - chr17:64749663-64781707:- chr17:64754654:- chr17:62745781-62777825:- chr17:62750772:- chr17:64570354 chr17:64757163 NA NA chr17:62566472 chr17:62753281 NA NA sense sense stop-codon CDS/splice-site exon/splice-site duplication high none C2_domain(100%),WW_domain(100%)| C2(100%),WW(100%)| 2 3 4 201 120 ENST00000262435.14 ENST00000578492.5 upstream downstream duplicates(2) AAGAACTACGCAATGGGAGCGCCCAACACG___ACCGGCATCCGAATATTCTAGCCCTGGCAGACCTCTTAGCTGCTTTGTTGATGAGAACACTCCAATTAGTG...GGACAGTCTTCAGATCCCAGGCTGGCAGAGAGGAGAGgCAGGTCACAACGACATAGAAATTACATGAGCAGAACACATTTACATACTCCTCCAGACCTACC...AACAAGGCCAGGTGTATTTCTgACATACACAGACTGGTGTGAGCACATGGCATGATCCAAGAGTGCCCAG___GGATCTTAGCAACATCAATTGTGAAGAGCTTGGTCCATTGCCTCCTGGATGGGAGATCCGTAATACGGCAACAGGCAGAGTTTATTTCGTTGACCATAACAACAGAACAACACAATTTACAGATCCTCGGCTGTCTGCTAACTTGCATTTAGTTTTAAA|ACTCCTGCCCTAAGAGCCATAGGGAATATCGTCACTGGTACAGATGAACAGACTCAGGTTGTGATTGATGCAGGAGCACTCGCCGTCTTTCCCAGCCTGCTCACCAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCAAACATCACAGCCAGCCGCCAGGACCAGATACAGCAAGTTGTGAATCATGGATTAGTCCCATTCCTTGTCAGCGATCTCTCTAAG___ATTTTGAGACACAAAAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5640 DNMBP::CRTAC1 ENSG00000107554.17::ENSG00000095713.14 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNMBP ENSG00000107554.17 protein_coding - - chr10:99875577-100009947:- chr10:99955214:- chr10:101635334-101769704:- chr10:101714971:- CRTAC1 ENSG00000095713.14 protein_coding - - chr10:97865000-98030828:- chr10:97936366:- chr10:99624757-99790585:- chr10:99696123:- chr10:99938180,chr10:99938183,chr10:99938184 chr10:97959004,chr10:97959004,chr10:97959005 NA NA chr10:101697937,chr10:101697940,chr10:101697941 chr10:99718761,chr10:99718761,chr10:99718762 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none SH3_domain(65%),Variant_SH3_domain(100%)|ASPIC_and_UnbV(100%),Calcium-binding_EGF_domain(100%),FG-GAP-like_repeat(89%) SH3_1(88%),SH3_2(93%),SH3_9(100%)|EGF_CA(100%),Erf4(100%),FG-GAP_3(8%),UnbV_ASPIC(100%) 1 3 2 55 4 ENST00000324109.9 ENST00000370597.8 upstream downstream duplicates(1) CTGGACCAGACCTCCCCATGCCCCTTAGTGCTGGTGAGGATTGAGGAAATGGAGCGGGACTTGGATATGTACAGTAGAGCTCAAGAAGAGCTAAACCTCATGCTGGAGGAGAAGCAGGATGAATCATCAAGAGCAGAGACCCTCGAGGATCTCAAGTTCTGTGAAAGTAACATTGAAAGTTTGAATATGGAACTCCAGCAACTAAGAG|GTACAATGGACCCAACCTGGTTCTGAAGTATGACCGGGCCCAGAAGCGGCTGGTGAACATCGCGGTCGATGAGCGCAGCTCAC...TGCGGGACCGGCAGGGGAACGCCATCGGGGTCACAGCCTGCGACATCGACGGGGACGGCCGGGAGGAGATCTACTTCCTCAACACCAATAATGCCTTCTCGG___GGGTGGCCACGTACACCGACAAGTTGTTCAAGTTCCGCAATAACCGGTGGGAAGACATCCTGAGCGATGAGGTCAACGTGGCCCGTGGTGTGGCCAGCCTCTTTGCCGG LDQTSPCPLVLVRIEEMERDLDMYSRAQEELNLMLEEKQDESSRAETLEDLKFCESNIESLNMELQQLR|gtmdptwf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3085 chr10:97875813-97875897:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5643 HACD2::STK3 ENSG00000206527.10::ENSG00000104375.17 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 525 FALSE NA FALSE NA HACD2 ENSG00000206527.10 protein_coding - - chr3:123490820-123585053:- chr3:123567762:- chr3:123209667-123303900:- chr3:123286609:- STK3 ENSG00000104375.17 protein_coding - - chr8:98371228-98942827:- chr8:98774819:- chr8:99383456-99955055:- chr8:99787047:- chr3:123561142 chr8:98872062 NA NA chr3:123279989 chr8:99884290 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_tyrosine_phosphatase-like_protein__PTPLA(8%)|C_terminal_SARAH_domain_of_Mst1(100%),Protein_kinase_domain(100%) PTPLA(16%)|ABC1(100%),BTB_2(100%),Ion_trans(100%),Ion_trans_2(100%),Mst1_SARAH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_fungal(100%) 1 0 2 0 44 ENST00000383657.10 ENST00000523601.5 upstream downstream duplicates(1),low_entropy(1),mismatches(2) GACGCCAGCGGCACGCGGAAGAAGAAGGGCCCGGGGCCCCTGGCCACGGCGTACCTGGTCATCTACAATGTGGTGATGACAGCCGG___GTGGCTGGgTATAG...CTGGTCCGAGCATACCTGGCTAAGGGTAGCTACCATAGCCTTTATTATTCAATTGAAAAGCCTTTGAAATTCTTTCAAACTGGAGCCTTATTGGAG___ATTTTACATTGTGCTATAG|TAAACTAAAAAAGCTGAGTGAAGACAGTTTGACTAAGCAGCCTGAAGAAGTTTTTGATGTATTAGAGAAGCTTGGAGAAGG___GTCTTATGGAAGTGTATTTAAAGCAATACACAAGGAATCCGGTCAAGTTGTCGCAATTAAACAAGTtCCTGTTGAATCAGAT...TAAGAATACAGACCTCTGGATTGTTATGGAGTACTGTGGCGCTGGCTCTGTCTCAGACATAATTAGATTACGAAACAAGACA___TTAATAGAAGATGAAATTG LVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAI|vn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-9903 chr8:98393645-98393738:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase 3 STE STE20 MST Q13188 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5645 KLC1::COA8 ENSG00000126214.22::ENSG00000256053.9 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 981 TRUE 359 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ COA8 ENSG00000256053.9 protein_coding + + chr14:103562960-103607523:+ chr14:103571623:+ chr14:104029297-104073860:+ chr14:104037960:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(100%) DUF2315(69%)| 6 20 7 151 592 ENST00000348520.10 ENST00000674165.1 downstream upstream duplicates(4),mismatches(7) GCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTACATACCTGAAAATGAATCTCCATTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGAATGGAATCAACAGTTCTGGGCAAACCAGAATTTGACTTTTAGTAAG___GAAAAAGAAGAATTTATTCACTCAAGACTAAAAACTAAAGGCCTGGGCCTGAGAACTGAATCAG___GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5646 KLC1::COA8 ENSG00000126214.22::ENSG00000256053.9 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 981 TRUE 359 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ COA8 ENSG00000256053.9 protein_coding + + chr14:103562960-103607523:+ chr14:103587274:+ chr14:104029297-104073860:+ chr14:104053611:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(33%) DUF2315(69%)| 1 1 1 151 830 ENST00000348520.10 ENST00000674165.1 downstream upstream none GGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTC...ATAACAG___AGATTGGTACAAGCGCAATTTTGCCATCACCTTCTTCATGGGAAAAGTGGCCCTGGAAAGGATTTGGAACAAGCTTAAACAGAAACAAAAGAAG...TCCTgTCACAGGGGCTCTGAGAAAAACTGGAGCgtATCTCAAGAAGCCCCACATCTTCCTAAGGGGCCCCATGGCCTGTTTGGGGGCAGGGTAGGTCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5647 KLC1::ENSG00000256500 ENSG00000126214.22::ENSG00000256500.6 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 982 TRUE 360 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ ENSG00000256500 ENSG00000256500.6 protein_coding + + chr14:103562962-103685924:+ chr14:103571623:+ chr14:104029299-104152261:+ chr14:104037960:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(100%),Tetratricopeptide_repeat(100%) DUF2315(69%)|DUF2315(100%),PPR(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 6 20 7 151 592 ENST00000348520.10 ENST00000472726.3 downstream upstream duplicates(4),mismatches(7) GCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTACATACCTGAAAATGAATCTCCATTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGAATGGAATCAACAGTTCTGGGCAAACCAGAATTTGACTTTTAGTAAG___GAAAAAGAAGAATTTATTCACTCAAGACTAAAAACTAAAGGCCTGGGCCTGAGAACTGAATCAG___GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5648 KLC1::ENSG00000256500 ENSG00000126214.22::ENSG00000256500.6 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 982 TRUE 360 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ ENSG00000256500 ENSG00000256500.6 protein_coding + + chr14:103562962-103685924:+ chr14:103587274:+ chr14:104029299-104152261:+ chr14:104053611:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(31%),Tetratricopeptide_repeat(100%) DUF2315(69%)|DUF2315(81%),PPR(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 1 0 1 151 830 ENST00000348520.10 ENST00000472726.3 downstream upstream none GGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGG...ATAACAG___AGATTGGTACAAGCGCAATTTTGCCATCACCTTCTTCATGGGAAAAGTGGCCCTGGAAAGGATTTGGAACAAGCTTAAACAGAAACAAAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5660 TBC1D31::ZNF536 ENSG00000156787.17::ENSG00000198597.10 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123144855:+ chr8:124054208-124164393:+ chr8:124157095:+ ZNF536 ENSG00000198597.10 protein_coding + + chr19:30224891-30713586:+ chr19:30643537:+ chr19:30715798-31204493:+ chr19:31134444:+ chr8:123149190,chr8:123149188 chr19:30627834,chr19:30627829 NA NA chr8:124161430,chr8:124161428 chr19:31118741,chr19:31118736 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Rab-GTPase-TBC_domain(100%)|C2H2-type_zinc-finger_domain(51%) DER1(100%),RabGAP-TBC(100%),WD40(100%)| 2 0 0 51 1 ENST00000287380.6 ENST00000706148.1 downstream upstream duplicates(1) GAAACCCAGAGCCAGAAAACTCAGAAG___GTGATTAAAGAAAATTTGGCAAAGGCTGAACAAGCATGCCTAAATACCGACTGGCAGATTCAGTCTTTACATAAACAAA...AAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTAGAACATGCTGAAAATCCATGTCATAAAG|ATGATTCTCAATGACTGATTTCAAGACACATTCCGGACAG___TACAACCCAGAT KWFLKQEINAAVEHAENPCHK|dDSQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5664 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 985 TRUE 361 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127860093:+ chr8:128806772-129199347:+ chr8:128872339:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 8 1 ENST00000652695.1 ENST00000519071.6 downstream downstream none TGCGGCTGCCAGCGGTGATGAGAACTGATGACACTCCAGGGCTACCAGGAACG|GAGATCCCCAGAGGCAATTGTCCACCTGACTTCAGAATCAGAAGTA...AGTAACTTAAG___GAGGAAGTCAGCTACCATGCCTCCAGGACACTCAAGTAACCCCATGGAGATGACATTGCAGAGAAGAACTGGTCGAAAGCCAGTACCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5665 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 985 TRUE 361 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 103 1 ENST00000651587.1 ENST00000519071.6 downstream downstream none CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGG...AGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GAGATCCCCAGAGGCAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5677 SNHG29::CKAP5 ENSG00000175061.20::ENSG00000175216.15 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SNHG29 ENSG00000175061.20 lncRNA + + chr17:16438767-16480249:+ chr17:16439703:+ chr17:16342081-16383563:+ chr17:16343017:+ CKAP5 ENSG00000175216.15 protein_coding - - chr11:46743048-46846308:- chr11:46778599:- chr11:46764598-46867859:- chr11:46800149:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |CLASP_N_terminal(64%) |CLASP_N(11%) 1 0 1 6950 287 ENST00000472367.5 ENST00000529230.6 downstream downstream none GCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGG___GAAGTGCCGTCAGAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGAAACCTCTACAACTTAGTTGACC...GCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAG|ATGCAGGGACAAAGTCCACCTGCTCCAACCAGAGGAATTTCCAAGCATAGCACAAGTGGTACAGATGAAGGAGAAGATGGAGATGAACCAGATGACGGGAGCAATGATGTCGTTGATCTTTTGCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-5582 chr11:46753125-46753192:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5679 SNHG17::PCMTD1-DT ENSG00000196756.15::ENSG00000228801.8 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNHG17 ENSG00000196756.15 lncRNA - - chr20:38419638-38435409:- chr20:38426419:- chr20:37048285-37064052:- chr20:37055062:- PCMTD1-DT ENSG00000228801.8 lncRNA + - chr8:51899268-51949874:+ chr8:51923096:- chr8:52811828-52862434:+ chr8:52835656:- chr20:38426077,chr20:38426080 chr8:51934485,chr8:51934485 NA NA chr20:37054720,chr20:37054723 chr8:52847045,chr8:52847045 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 150 95 136 1312 443 ENST00000654008.2 unknown upstream downstream duplicates(52),low_entropy(1),mismatches(20),multimappers(18) CTGG___GAGTGTCACATGACTGCCGCCCCATGTGTGTGAGAGGCGTCCTCTGGGAGAGCATGGATCCTGAGGTCCCAG___GATTGTCAGCTGACCTCTGTCCTGTGTGCCCAGTGGCCCCAGGTGACGTGTCTTCAAGAAGAGGCTGAGCTGCGGTGCTTGTAAG|GTCCTTAGACAAAAACTCAATCAACTGTCAACCAGAAATGTTTAAATTTACCTATAGCTTGGAAGCTCCGCCCCCTTCAAGTTGACCTGCCTTTCTGGAACAAACCAATGTATTCCTTAAATGTATTTGATTGATAGATTATGCTTCCCTAAAATTTGTAAAACCAACCTGCACCCCAAACACCTTGGGCACATGTTCTCAGGACCTCCTGAGGGCTGTGTCATGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5680 PRMT1::BCL2L12 ENSG00000126457.22::ENSG00000126453.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 526 TRUE 986 TRUE 362 PRMT1 ENSG00000126457.22 protein_coding + + chr19:49675786-49689029:+ chr19:49682259:+ chr19:50179043-50192286:+ chr19:50185516:+ BCL2L12 ENSG00000126453.11 protein_coding + + chr19:49665142-49673916:+ chr19:49673698:+ chr19:50168399-50177173:+ chr19:50176955:+ chr19:49682774,chr19:49682774 chr19:49671841,chr19:49671838 NA NA chr19:50186031,chr19:50186031 chr19:50175098,chr19:50175095 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Methyltransferase_domain(31%),Ribosomal_protein_L11_methyltransferase_(PrmA)(77%)| MTS(14%),Met_10(13%),Methyltransf_11(9%),Methyltransf_25(9%),PrmA(14%)| 159 123 82 3414 878 ENST00000532489.5 ENST00000619007.4 downstream upstream duplicates(58),mismatches(57) GGCGGAAAGCAGTGAGAAGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAG___GAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGG___ATCGAGTGTTCCAGTATCTCTGATTATGCGGTGAAGATCGTCAAAGCCAACAAGTTAGACCACG|GAGGGCATCCTGGCTGTTTCACCCGTGGACTTGAACTTGCCATTGGACTGAGCTCTTTCTCAGAAGCTGCTACAAGATGACACCTCATGTCCCTGCCCTCTTCGTGTGCTTTTCCAAGTCTTCCTATTCCACTCAGGGCTGTGGGGTGGTGGTTGC MTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDH|gGHPGCFTRGLELAIGLSSFSEAATR* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5088 chr19:49682117-49682195:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE BCL2 like 12 2 melanoma, SCC epithelial oncogene missense 5681 PRMT1::BCL2L12 ENSG00000126457.22::ENSG00000126453.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 986 TRUE 362 PRMT1 ENSG00000126457.22 protein_coding + + chr19:49675786-49689029:+ chr19:49682065:+ chr19:50179043-50192286:+ chr19:50185322:+ BCL2L12 ENSG00000126453.11 protein_coding + + chr19:49665142-49673916:+ chr19:49673698:+ chr19:50168399-50177173:+ chr19:50176955:+ chr19:49682774,chr19:49682774 chr19:49671841,chr19:49671838 NA NA chr19:50186031,chr19:50186031 chr19:50175098,chr19:50175095 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Methyltransferase_domain(17%),Ribosomal_protein_L11_methyltransferase_(PrmA)(56%)| MTS(4%),Met_10(4%),Methyltransf_11(2%),Methyltransf_25(2%),PrmA(4%)| 4 4 69 3006 878 ENST00000610806.4 ENST00000246785.7 downstream upstream duplicates(9),mismatches(6) GCCGCGAACTGCATCATGGAG___...AGCCCAACGCTGAGGACATGACATCCAAAGATTACTACTTTGACTCCTACGCACACTTTGGCATCCACGAG___GAGATGCTGAAGGACGAGGTGCGCACCCTCACTTACCGCAACTCCATGTTTCATAACCGGCACCTCTTCAAGGACAAGGTGGTGCTGGACGTCGGCTCGGGCACCGGCATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGCAAGGTCATCGGG|GAGGGCATCCTGGCTGTTTCACCCGTGGACTTGAACTTGCCATTGGACTGAGCTCTTTCTCAGAAGCTGCTACAAGATGACACCTCATGTCCCTGCCCTCTTCGTGTGCTTTTCCAAGTCTTCCTATTCCACTCAGGGCTGTGGGGTGGTGGTTGCCCTACCTGTTTTTGCCAA PNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIG|EGILAVSPVDLNLPLD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE BCL2 like 12 2 melanoma, SCC epithelial oncogene missense 5682 TMEM123::MMP20 ENSG00000152558.15::ENSG00000137674.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 527 TRUE 987 TRUE 363 TMEM123 ENSG00000152558.15 protein_coding - - chr11:102396332-102470384:- chr11:102448812:- chr11:102267063-102341115:- chr11:102319543:- MMP20 ENSG00000137674.4 protein_coding - - chr11:102576832-102625332:- chr11:102610030:- chr11:102447563-102496063:- chr11:102480761:- chr11:102440151,chr11:102440158 chr11:102614128,chr11:102614132 NA NA chr11:102310882,chr11:102310889 chr11:102484859,chr11:102484863 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Hemopexin(100%),Matrixin(61%) |Hemopexin(100%),Peptidase_M10(33%) 100 62 83 3160 345 ENST00000398136.7 ENST00000260228.3 upstream downstream duplicates(9),low_entropy(1),mismatches(4) CGTGCGCGGCCGAAGGGGAAGCGGAGCCGGCGCCGGCTGCGCAGAGGAGCCGCTCTCGCCGCCGCCACCTCGGCTGGGAGCCCACGAGGCTGCCGCATCCTGCCCTCGGAACAATGGGACTCGGCGCGCGAGGTGCTTGGGCCGCGCTGCTCCTGGGGACGCTGCAGGTGCTAGCGCTGCTGGGGGCCGCCCATGAAAGCGCAGCCATGGCGG___CATCTGCAAACATAGAGAATTCTGGGCTTCCACACAACTCCAGTGCTAACTCAACAG|ATCACGGGGATTCCTATCCATTCGATGGGCCTCGGGGGACTCTAGCCCATGCATTTGCTCCTGGAGAAGGCCTGGGAGGAGATACACATTTCGACAATGCTGAGAAGTGGACTATGGGAACGAATG___GTTTTAATTTGTTTACCGTTGCTGC MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANST|dHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTNGFNLFTVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma,Colon adenocarcinoma,Stomach adenocarcinoma,Breast invasive carcinoma LUNG,COLON,STOMACH,BREAST exact 102319543,102319543,102319543|102318967,102319543 TRUE,TRUE,TRUE|FALSE,TRUE 102480761,102464326,102449873|102449873,102480761 TRUE,FALSE,FALSE|FALSE,TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5683 TMEM123::MMP20 ENSG00000152558.15::ENSG00000137674.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 528 TRUE 987 TRUE 363 TMEM123 ENSG00000152558.15 protein_coding - - chr11:102396332-102470384:- chr11:102448812:- chr11:102267063-102341115:- chr11:102319543:- MMP20 ENSG00000137674.4 protein_coding - - chr11:102576832-102625332:- chr11:102611903:- chr11:102447563-102496063:- chr11:102482634:- chr11:102440151,chr11:102440158 chr11:102614128,chr11:102614132 NA NA chr11:102310882,chr11:102310889 chr11:102484859,chr11:102484863 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Hemopexin(100%),Matrixin(93%) |Hemopexin(100%),Peptidase_M10(51%) 29 19 100 3160 51 ENST00000398136.7 ENST00000260228.3 upstream downstream duplicates(9),mismatches(4) CCGGCGCCGGCTGCGCAGAGGAGCCGCTCTCGCCGCCGCCACCTCGGCTGGGAGCCCACGAGGCTGCCGCATCCTGCCCTCGGAACAATGGGACTCGGCGCGCGAGGTGCTTGGGCCGCGCTGCTCCTGGGGACGCTGCAGGTGCTAGCGCTGCTGGGGGCCGCCCATGAAAGCGCAGCCATGGCGG___CATCTGCAAACATAGAGAATTCTGGGCTTCCACACAACTCCAGTGCTAACTCAACAG|AATATCTAAATACACACCTTCCATGAGTTCTGTCGAGGTGGACAAAGCAGTGGAGATGGCCTTGCAGGCCTGGAGTAGCGCCGTCCCTCTGAGCTTTGTCAGAATAAACTCAGGAGAAGCGGATATTATGATATCTTTTGAAAATGGAG___ATCACGGGGATTCCTATCCATTCGATGGGCCTCGGGGGACTCTAGCCCATGCATTTGCTCCTGGAGAAGGCCTGGGA MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANST|eylnthlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma,Colon adenocarcinoma,Stomach adenocarcinoma,Breast invasive carcinoma LUNG,COLON,STOMACH,BREAST exact 102319543,102319543,102319543|102318967,102319543 TRUE,TRUE,TRUE|FALSE,TRUE 102480761,102464326,102449873|102449873,102480761 FALSE,FALSE,FALSE|FALSE,FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5685 MTAP::PCDH7 ENSG00000099810.21::ENSG00000169851.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 529 TRUE 988 TRUE 364 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ PCDH7 ENSG00000169851.16 protein_coding + + chr4:30720369-31146805:+ chr4:30920153:+ chr4:30721991-31148427:+ chr4:30921775:+ chr9:21858484,chr9:21858480 chr4:30814979,chr4:30814972 NA NA chr9:21858483,chr9:21858479 chr4:30816601,chr4:30816594 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 43 70 58 147 202 ENST00000644715.2 ENST00000695919.1 downstream upstream duplicates(23),mismatches(16),multimappers(2) TGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|CCATTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCAGAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCAAGACTGGGTGCGCTTCCACTCCCAGAGGACAACTATGAAAGGACCACGCCGGATGGCAGTGTTGGTGAGGCAGAGCATATGGAAAATG CHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|PFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5686 MTAP::PCDH7 ENSG00000099810.21::ENSG00000169851.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 988 TRUE 364 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21838010:+ chr9:21802635-21937650:+ chr9:21838009:+ PCDH7 ENSG00000169851.16 protein_coding + + chr4:30720369-31146805:+ chr4:30920153:+ chr4:30721991-31148427:+ chr4:30921775:+ chr9:21858484,chr9:21858480 chr4:30814979,chr4:30814972 NA NA chr9:21858483,chr9:21858479 chr4:30816601,chr4:30816594 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Phosphorylase_superfamily(57%)| PNP_UDP_1(62%)| 1 0 12 224 202 ENST00000644715.2 ENST00000511884.7 downstream upstream low_entropy(1),mismatches(1),multimappers(1) ATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAA...CACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|CCATTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCAGAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCAAGACTGGGTGCGCTTCCACTCCCAGAGGACAACTATGAAAGGACCACGCCGGATGGCAGTGTTGG...___ATTCAAGGCCTCTTC HVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|PFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5687 MTAP::PCDH7 ENSG00000099810.21::ENSG00000169851.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 988 TRUE 364 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854869:+ chr9:21802635-21937650:+ chr9:21854868:+ PCDH7 ENSG00000169851.16 protein_coding + + chr4:30720369-31146805:+ chr4:30950119:+ chr4:30721991-31148427:+ chr4:30951741:+ chr9:21858484,chr9:21858480 chr4:30814979,chr4:30814972 NA NA chr9:21858483,chr9:21858479 chr4:30816601,chr4:30816594 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 1 4 147 45 ENST00000644715.2 ENST00000509759.2 downstream upstream none GTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAG|g|GGTGgTGCTGCCATCACTgCCTTTCCCTTCCTCCCCTTTCCTCATGGCAAG FCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEE|g|vvlpslpfpsspflma NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5688 MTAP::PCDH7 ENSG00000099810.21::ENSG00000169851.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 988 TRUE 364 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ PCDH7 ENSG00000169851.16 protein_coding + + chr4:30720369-31146805:+ chr4:31142473:+ chr4:30721991-31148427:+ chr4:31144095:+ chr9:21858484,chr9:21858480 chr4:30814979,chr4:30814972 NA NA chr9:21858483,chr9:21858479 chr4:30816601,chr4:30816594 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 0 1 3 147 199 ENST00000644715.2 ENST00000695921.1 downstream upstream none CAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|ATTCAAGGCCTCTTCCAGATGTAGCCCTGACTG...GTATGGCCACTCAGACTCCTGCTGGATGCCGGTCCGCACTTCTCCGGAGAGGAAGAAGAGCCAGCCTAAACTGTCCACTTTCATGCCTGTTGATGAACGAGGAAGCCAGGAAAAGCTGGCCAATGGGGAGGCCGCCATCATGGGTGACCGCAACAGAAACCTCCTGAACAAAAAGTTGACCTCATCCTATGAGACCTTCAGTGCAGC KGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|IQGLFQM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5689 PTEN::ERBB4 ENSG00000171862.15::ENSG00000178568.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTEN ENSG00000171862.15 protein_coding + + chr10:87862638-87971930:+ chr10:87927599:+ chr10:89622395-89731687:+ chr10:89687356:+ ERBB4 ENSG00000178568.16 protein_coding - + chr2:211375717-212538841:- chr2:211596590:+ chr2:212240442-213403565:- chr2:212461315:+ chr10:87928226,chr10:87928217 chr2:211596511,chr2:211596499 NA NA chr10:89687983,chr10:89687974 chr2:212461236,chr2:212461224 NA NA sense antisense stop-codon 3'UTR/splice-site intron translocation/5'-5' high none none none 6 5 125 45 109 ENST00000688922.2 unknown downstream upstream duplicates(4),mismappers(7),mismatches(14),multimappers(1) TATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG___GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT___ATGGGGAATCTGAGGCCTAGAGAAGTTAAGTGAGTTGAACAAGGTCACACAG|CACCCTGAGACCCCTGGGAGCCTCCTTCTTACCCCTGAAGACCTTTCTCTAGGTCCTAGTTTTATAATCTTTTTCTCTTGATGACTTTTTTTtCCCCCTCTGATCTATCTCTTCATGAAATGCCCTTCTCCTACATGTGTAACAACTAAAGAATGATGTAGCTTTTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatase and tensin homolog gene 1 Yes glioma, prostate, endometrial harmartoma, glioma, prostate, endometrial Cowden syndrome, Bannayan-Riley-Ruvalcaba syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 5694 PTPRA::HHLA1 ENSG00000132670.21::ENSG00000132297.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 990 FALSE NA PTPRA ENSG00000132670.21 protein_coding + + chr20:2873420-3039076:+ chr20:2923285:+ chr20:2854066-3019722:+ chr20:2903931:+ HHLA1 ENSG00000132297.13 protein_coding - - chr8:132061480-132111159:- chr8:132095786:- chr8:133073727-133123406:- chr8:133108033:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 1 7 548 150 ENST00000216877.10 ENST00000414222.2 downstream downstream duplicates(1),mismatches(1) CGGCCCTGAGGGCTAGTGGCGGCCCGAAACGCCGCCGCGGAGCCGAGGCGGAGCCGCTGTCCTCGTCCCCAGCGGTCCCGCCCAACGCCCGACTCT___GTGACACAACTAAAAAAAAACAAAGGTATTTATGGAATTCCACTGAGTGGTAATGGATGATGCAGTTCAAATAACTAAG|ATAGCAAGAAGTTCTTCTCCTTGCTGAGTGTCACTTCCTACAGTTCCTTCGCCTTCCACAAGTTTTCTGTAGCTGTTTACAACA___TTTCTAACCTGAAGACAGTgGACCCCGCCAAATTCCCCACAAGGTATTGCTACTGTTTAAACAATCGGACCAATGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5695 ATAD2::ENSG00000258425 ENSG00000156802.13::ENSG00000258425.1 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123396187:- chr8:124332090-124428590:- chr8:124408427:- ENSG00000258425 ENSG00000258425.1 lncRNA + + chr14:74552181-74560048:+ chr14:74559764:+ chr14:75018884-75026751:+ chr14:75026467:+ chr8:123395937,chr8:123395948 chr14:74558424,chr14:74558413 NA NA chr8:124408177,chr8:124408188 chr14:75025127,chr14:75025116 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 28 31 29 792 132 ENST00000287394.10 ENST00000554552.1 upstream upstream duplicates(5),mismatches(4) GCCAGAGCTGCGAGCGCCTGGAGCTGGATCTCTCTCCGGTCGCGCACGCCGAGGCCAGTAGGGAGAGAAGATGGTGGTTCTCCGCAGCAGCTTGGAGCTGCACAACCACTCCGCGGCCTCGGCCACGGGCTCCTTGGACCTGTCCAGTGACTTCCTCAGTCTGGAGCACATCGGCCGGAGGCGGCTCCGCTCGGCCGGCGCGGCGCAGAAGAAACCCGCGGCGACCACAGCCAAAGCGGGC|TCTCAGGTTGTGGGACATCAAGAGAAGGGTCTGGTGCCATGTTTGCCCCAGGCTGGTCCAAAGAAGCAGTATCCCCCCGATTAAGGACAGTAGAGGTCTGGTAACAGAAGAAGGCAAGTCTCAATGAGAAaGTGACCACAGCCCCCAGGAGATGCTCCATCTACTATCAGCCTTGGAAGAACCGCTGCAATTTCATCAAAGGACAGAGGTTCCCAAACTCACCCAG MVVLRSSLELHNHSAASATGSLDLSSDFLSLEHIGRRRLRSAGAAQKKPAATTAKAG|sqvvghqekglvpclpqagpkkqyppd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5696 XRCC6::UQCC2 ENSG00000196419.13::ENSG00000137288.10 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 531 FALSE NA FALSE NA XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ UQCC2 ENSG00000137288.10 protein_coding - - chr6:33694293-33711727:- chr6:33701420:- chr6:33662070-33679504:- chr6:33669197:- chr22:41656595,chr22:41656595 chr6:33706553,chr6:33706562 NA NA chr22:42052599,chr22:42052599 chr6:33674330,chr6:33674339 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ku70/Ku80_N-terminal_alpha/beta_domain(100%),Ku70/Ku80_beta-barrel_domain(88%)| Ku(67%),Ku_N(100%)| 32 19 32 3475 975 ENST00000428575.6 ENST00000374231.8 downstream downstream duplicates(4),mismatches(4) AAAACGGTTTGATGATCCAGGTTTGATGCTCATGGGTTTCAAGCCGTTGGTACTGCTGAAGAAACACCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTG___GGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAG|GTTGCAGAGCCTGAGGCCTGTGATCAGATGTACGAGAGCTTAGCGCGACTCCATTCAAACTACTACAAACACAAG___TACCCTCGCCCCAGAGACACCAGCTTCAGTGGCCTGTCGTTGGAAGAGTACAAGCTGATCCTGTCCACAG___ACACCTTGGAAGAGCTTAAGGAA KRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP|gcra* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5697 RNF111::TCF12 ENSG00000157450.16::ENSG00000140262.18 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 532 TRUE 991 TRUE 365 RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:58988068:+ chr15:59157374-59389618:+ chr15:59280267:+ TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57192158:+ chr15:57210821-57591479:+ chr15:57484356:+ chr15:59004745,chr15:59004743 chr15:57169752,chr15:57169747 NA NA chr15:59296944,chr15:59296942 chr15:57461950,chr15:57461945 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Helix-loop-helix_DNA-binding_domain(100%) RRM_1(100%),RRM_5(100%),SAP(100%)|HLH(100%) 29 12 34 184 285 ENST00000348370.9 ENST00000267811.9 downstream upstream duplicates(5),mismatches(2) GGCGGCGACGGCGAGGAGGTGTTCGGTTTGCGCAGCGTAGAAACGCCCGCAGCTTCAGAGAAGGAGTTCTTGTGGGACCAAATTAGGCATTCTGAACCCACGCCGGCTTAGCTGGGCCGAGTCCAGGCGCTGCCGCACGTACAGTTTTGGTGGCGGTGACAGACACTGTTCTTGACTCTAGGGGCCTATTAGGCCGACGTCTGAGGCGCAGATCGCTGGCTCTCGACGCATTACTCTTTACGCCTTACATTTCTGTCTTCCTTCCTGGGTCAGTGATTCCCGGACCCTGGAAGAGAAGAGGGTGGCTAATGATTAAG|TCTAGTCTCCTGAGACAAGATCTGGGGCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAACCTGGGACAGCATACTATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTGCAGCGCTTG___ATCCCTTGCAAGCAAAAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCT___GTATATGCACCATCCCCAAATTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER exact 59359282,59280267 FALSE,TRUE 57383987,57565228 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation 5698 RNF111::TCF12 ENSG00000157450.16::ENSG00000140262.18 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 533 TRUE 991 TRUE 365 RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59004174:+ chr15:59157374-59389618:+ chr15:59296373:+ TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57192158:+ chr15:57210821-57591479:+ chr15:57484356:+ chr15:59004745,chr15:59004743 chr15:57169752,chr15:57169747 NA NA chr15:59296944,chr15:59296942 chr15:57461950,chr15:57461945 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Helix-loop-helix_DNA-binding_domain(100%) RRM_1(100%),RRM_5(100%),SAP(100%)|HLH(100%) 4 0 36 92 285 ENST00000559160.1 ENST00000267811.9 downstream upstream duplicates(4) GCGGTGACAGACACTGTTCTTGACTCTAGGGGCCTATTAGGCCGACGTCTGAGGCGCAGATCGCTGGCTCTCGACGCATTACTCTTTACGCCTTACATTTC...CCCGGACCCTGGAAGAGAAGAGGGTGGCTAATGATTAAG___ATGCTTGGGATGGAAGAAGTTTGAGTGACCTATCCTGTGTTTATCCTCCTTGCCGTAGCTGAGTTGATCTTTTTGAAACCCTCTTCCCAGACTCTTGGATTTATTTATTTTATTCCAGTGTGAATGCATGTTTTTTCCCTCATAGATGGCAGTTCTGGATTAGCAGTTTTAAG|TCTAGTCTCCTGAGACAAGATCTGGGGCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAACCTGGGACAGCATACTATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTGCAGCGCTTG___ATCCCTTGCAAGCAAAAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCT___GTATATGCACCATCCCCAAATTCAG MHVFSLIDGSSGLAVLs|lvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER exact 59359282,59280267 FALSE,FALSE 57383987,57565228 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation 5699 MBOAT2::PRKCE ENSG00000143797.12::ENSG00000171132.14 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 534 FALSE NA FALSE NA MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8882511:- chr2:8992820-9143838:- chr2:9022641:- PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:46145093:+ chr2:45878484-46415129:+ chr2:46372232:+ chr2:8877511,chr2:8877519 chr2:46098802,chr2:46098794 NA NA chr2:9017641,chr2:9017649 chr2:46325941,chr2:46325933 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none MBOAT__membrane-bound_O-acyltransferase_family(34%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(52%) MBOAT(77%)|PK_Tyr_Ser-Thr(9%),Pkinase(9%),Pkinase_C(100%) 20 21 33 129 111 ENST00000305997.8 ENST00000306156.8 upstream upstream duplicates(3),mismatches(5) ATATCTTTGACTATGGACAATATTCTGCTGATTTTTCAGG___CCCAATGATGATCATTACTCAGAAGATCACTAGTTTGGCTTGCGAAATTCATGATG___GGATGTTTCGGAAGGATGAAGAACTGACTTCCTCACAGAGGGATTTAGCTGTAAG|GGATTTGAAACTGGACAACATCCTTCTGGATGCAGAAGGTCACTGCAAGCTGGCTGACTTCGGGATGTGCAAGGAAGGGATTCTGAATGGTGTGAtGACCACCACGTTCTGTGGGACTCCTGACTACATAGCTCCTGAG___ATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGATGATGGCTGGACAGCCTCCCTTTGAGGCCG IFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVr|DLKLDNILLDAEGHCKLADFGMCKEGILNGVmTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5700 PRKCE::MBOAT2 ENSG00000171132.14::ENSG00000143797.12 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 535 FALSE NA FALSE NA PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:46086362:+ chr2:45878484-46415129:+ chr2:46313501:+ MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8888073:- chr2:8992820-9143838:- chr2:9028203:- chr2:46119203,chr2:46119203,chr2:46119202 chr2:8895923,chr2:8895924,chr2:8895922 NA NA chr2:46346342,chr2:46346342,chr2:46346341 chr2:9036053,chr2:9036054,chr2:9036052 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(47%)|MBOAT__membrane-bound_O-acyltransferase_family(74%) C1_1(100%),C2(100%),PK_Tyr_Ser-Thr(51%),Pkinase(51%)|MBOAT(27%) 4 9 12 33 107 ENST00000306156.8 ENST00000305997.8 downstream downstream duplicates(4),low_entropy(1),mismatches(1) TCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGACCAAG___GACCGCCTCTTTTTCGTCATGGAATATGTAAATGGTGGAGACCTCATGTTTCAGATTCAGCGCTCCCGAAAATTCGACGAGCCTCGTTCACGGTTCTATGCTGCAGAGGTCACATCGGCCCTCATGTTCCTCCACCAGCATGGAGTCATCTACAG|CCCAATGATGATCATTACTCAGAAGATCACTAGTTTGGCTTGCGAAATTCATGATG___GGATGTTTCGGAAGGATGAAGAACTGACTTCCTCACAGAGGGATTTAGCTGTAAG___GCGCATGCCAAGCTTACTGGAGTATTTGAGTTACAACTGTAACTTCATGGGGATCCTGGCAGGCCCACTTTGCTCTTACAAAGACTACATTACTTTCATTGAAGGCAGATCATACCATATCACACAATCTGGTGAAAATG LARKHPYLTQLYCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTSALMFLHQHGVIYs|PMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVRRMPSLLEYLSYNCNFMGILAGPLCSYKDYITFIEGRSYHITQSGEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5708 MEF2A::LINC01582 ENSG00000068305.19::ENSG00000259611.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEF2A ENSG00000068305.19 protein_coding + + chr15:99565417-99716488:+ chr15:99675458:+ chr15:100105622-100256693:+ chr15:100215663:+ LINC01582 ENSG00000259611.2 lncRNA - + chr15:98081993-98103761:- chr15:98101652:+ chr15:98625222-98646990:- chr15:98644881:+ chr15:99678386 chr15:98098510 NA NA chr15:100218591 chr15:98641739 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Holliday_junction_regulator_protein_family_C-terminal_repeat(100%),SRF-type_transcription_factor_(DNA-binding_and_dimerisation_domain)(100%)| HJURP_C(100%),SRF-TF(100%)| 18 21 27 717 106 ENST00000354410.9 unknown downstream upstream duplicates(4),low_entropy(2),mismatches(5) ACTGGTGTCCCCATCTTTGGCAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAG___GTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTCCAGTGG|GGGAAGCCAAGACCCCATGATGCAACTAGGTAAGTGATAGGAGCCAGGAGAGCTGCTCACCAGAAGAGGTTGAGACCAAGTCCACAAGTGCCTCCAGGAATATGAGAAACTGGGTAACTTCCGTGAAATGAGGCGAAGTACAAAGCCCTCTGCATCCCACTCAACACAAGGTGGGCTCCAGCTTCTCAGGGCAGGGAGTGGGAGACCAGTGGGAGCAAATGGCACATCC LVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPV|geaktp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5709 MEF2A::ENSG00000259199 ENSG00000068305.19::ENSG00000259199.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEF2A ENSG00000068305.19 protein_coding + + chr15:99565417-99716488:+ chr15:99675458:+ chr15:100105622-100256693:+ chr15:100215663:+ ENSG00000259199 ENSG00000259199.2 lncRNA - + chr15:98038571-98293199:- chr15:98101652:+ chr15:98581800-98836428:- chr15:98644881:+ chr15:99678386 chr15:98098510 NA NA chr15:100218591 chr15:98641739 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Holliday_junction_regulator_protein_family_C-terminal_repeat(100%),SRF-type_transcription_factor_(DNA-binding_and_dimerisation_domain)(100%)| HJURP_C(100%),SRF-TF(100%)| 18 21 27 717 106 ENST00000354410.9 unknown downstream upstream duplicates(4),low_entropy(2),mismatches(5) ACTGGTGTCCCCATCTTTGGCAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAG___GTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAGCTGGAAGCAGTCCAGTGG|GGGAAGCCAAGACCCCATGATGCAACTAGGTAAGTGATAGGAGCCAGGAGAGCTGCTCACCAGAAGAGGTTGAGACCAAGTCCACAAGTGCCTCCAGGAATATGAGAAACTGGGTAACTTCCGTGAAATGAGGCGAAGTACAAAGCCCTCTGCATCCCACTCAACACAAGGTGGGCTCCAGCTTCTCAGGGCAGGGAGTGGGAGACCAGTGGGAGCAAATGGCACATCC LVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPV|geaktp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5712 CTSC::CLVS1 ENSG00000109861.17::ENSG00000177182.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTSC ENSG00000109861.17 protein_coding - - chr11:88265069-88359684:- chr11:88334937:- chr11:87998237-88092852:- chr11:88068105:- CLVS1 ENSG00000177182.11 protein_coding + - chr8:61057158-61501645:+ chr8:61294620:- chr8:61969717-62414204:+ chr8:62207179:- chr11:88319333,chr11:88319340 chr8:61295648,chr8:61295652 NA NA chr11:88052501,chr11:88052508 chr8:62208207,chr8:62208211 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Cathepsin_C_exclusion_domain(68%)| CathepsinC_exc(10%)| 23 6 20 771 48 ENST00000678554.1 unknown upstream downstream duplicates(1) CTCAGCTCCCTGCAGCATGGGTGCTGGGCCCTCCTTGCTGCTCGCCGCCCTCCTGCTGCTTCTCTCCGGCGACGGCGCCGTGCGCTGCGACACACCTGCCAACTGCACCTATCTTGACCTGCTGGGCACCTGGGTCTTCCAGGTGGGCTCCAGCGGTTCCCAGCGCGATGTCAACTGCTCGGTTATGG___GACCACAAGAAAAAAAAGTAGTGGTGTACCTTCAGAAGCTGGATACAGCATATGATGACCTTGGCAATTCTGGCCATTTCACCATCATTTACAACCAAGGCTTTGAGATTGTGTTGAATGACTACAAGTGGTTTGCCTTTTTTAAG|GGATCCTGCAATAGACAGAAGAAAGATAATTCCCTGGGAAGTGCTGAG___ATCCATGTAACCGTGACCCTTCTTCTGGATGTGATTGCACAGACAATGGCAGCAGTGGGAATCACA MGAGPSLLLAALLLLLSGDGAVRCDTPANCTYLDLLGTWVFQVGSSGSQRDVNCSVMGPQEKKVVVYLQKLDTAYDDLGNSGHFTIIYNQGFEIVLNDYKWFAFFK|gscnrqkkdnslgsaeihvtvtllldviaqtmaavgi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5717 PDZRN3::LINC02005 ENSG00000121440.15::ENSG00000242741.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDZRN3 ENSG00000121440.15 protein_coding - - chr3:73382431-73624941:- chr3:73602354:- chr3:73431582-73674092:- chr3:73651505:- LINC02005 ENSG00000242741.2 lncRNA + + chr3:73805754-73902960:+ chr3:73869776:+ chr3:73854905-73952111:+ chr3:73918927:+ chr3:73594971,chr3:73594975 chr3:73868281,chr3:73868277 NA NA chr3:73644122,chr3:73644126 chr3:73917432,chr3:73917428 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none PDZ_domain(34%),TRAF-type_zinc_finger(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)| PDZ(3%),PDZ_2(0%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%),zf-TRAF(100%)| 12 12 17 55 26 ENST00000263666.9 ENST00000498832.1 upstream upstream duplicates(2),low_entropy(1),mismatches(1) CCAAAAGTCTGACTCTTGTCCTGCATCGGGACTCCGGCTCCCTGGGATTCAATATTATTGGTGGCCGGCCGAGTGTG___GATAACCACGATGGATCATCCAGTGAAGGAATCTTTGTATCCAAGATAGTTGACAGTGGGCCTGCAGCCAAGGAAGGAGGCCTGCAAATTCATGACAGGATTATTGAG|GATACCCCATGGTTCTCCTACCACCAGATGCTACTGAGGCTAAACTGACTGGACTGAGGAAAAATATCTGTGGGGAAAACTgTCTTTCAGAATCCAACTTTGAACCAGAGAAATCCATTCTCTTGAAGCTGTCTGCTGTGGAGAAGTTGGCCTTACCAATCTGCCTTTGAAGTTCAAGTTATACAG___GATCTGCGAGGCTACCTGTGAATGAATGGTTGGTTGGTCAC KSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIE|dtpwfsyhqmllrln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5729 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39917321:- chr17:38060848-38076107:- chr17:38073574:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Mediator_of_RNA_polymerase_II_transcription_subunit_1(22%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(100%) Med1(18%)|Gasdermin(100%),Gasdermin_C(100%) 13 8 13 372 77 ENST00000394287.7 ENST00000520542.5 upstream downstream duplicates(3),mismatches(2) TAAGCTTGTGCGTCAAGTCATG___GAGAAGAGGGTTGTGATGAGTTCTGGAGGGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGG___...CTGAATGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTG___AGCTGTCCGGAGCTTGTACAGCAGCTAAG|GCGCAATGTTCAGCGTATTTGAGGAAATCACAAGAATTGTAGTTAAGGAGATGGATGCTGGAGGGGATATGATTGCCGTTAGAAGCCTTGTTGATGCTGATAGATTCCGCTGCTTCCATCTGGTGGGGGAGAAGAGAACTTTCTTTGGATGCCGGCACTACACAACAGGCCTCACCCTGATGGACATTCTGGACACAGATGGGGACAAGTGGTTAGATGAACTGGATTCTGGGCTCCAAG___GTCAAAAGGCTGAGTTTCAAATTCT ECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLr|rnvqri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5730 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39917330:- chr17:38060848-38076107:- chr17:38073583:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Mediator_of_RNA_polymerase_II_transcription_subunit_1(22%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(100%) Med1(18%)|Gasdermin(100%),Gasdermin_C(100%) 6 9 14 372 77 ENST00000394287.7 ENST00000418519.6 upstream downstream duplicates(5),mismatches(1) GGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGG___ACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTG___...GAGCTGTCCGGAGCTTGTACAGCAGCTAAG|TTGGTCCAGGCGCAATGTTCAGCGTATTTGAGGAAATCACAAGAATTGTAGTTAAGGAGATGGATGCTGGAGGGGATATGATTGCCGTTAGAAGCCTTGTTGATGCTGATAGATTCCGCTGCTTCCATCTGGTGGGGGAGAAGAGAACTTTCTTTGGATGCCGGCACTACACAACAGGCCTCACCCTGATGGACATTCTGGACACAGATGGGGACAAGTGGTTAGATGAACTGGATTCTGGGCTCCAAG___GTCAAAAGGCTGAGTTTCAAATTCTGGATAATGTAGA SCPELVQQLs|wsrrnvqri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5731 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39912497:- chr17:38060848-38076107:- chr17:38068750:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Mediator_of_RNA_polymerase_II_transcription_subunit_1(22%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(67%) Med1(18%)|Gasdermin(53%),Gasdermin_C(100%) 1 0 1 372 229 ENST00000394287.7 ENST00000418519.6 upstream downstream none TGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGG___ACTGGGCTCTCATCTCAGT...GAGCTTGTACAGCAGCTAAG|GTCAAAAGGCTGAGTTTCAAATTCTGGATAATGTAGACTCAACGGGAGAGTTGATAGTGAGATTACCCAAAGAAATAACAATTTCAGGCAGTTTCCAGGGCTTCCAC ELVQQLr|skg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5732 HMGXB3::PPARGC1B ENSG00000113716.13::ENSG00000155846.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 544 TRUE 999 TRUE 367 HMGXB3 ENSG00000113716.13 protein_coding + + chr5:150000046-150053142:+ chr5:150027117:+ chr5:149379609-149432705:+ chr5:149406680:+ PPARGC1B ENSG00000155846.17 protein_coding + + chr5:149730298-149855022:+ chr5:149830767:+ chr5:149109861-149234585:+ chr5:149210330:+ chr5:150028823,chr5:150028820 chr5:149830721,chr5:149830715 NA NA chr5:149408386,chr5:149408383 chr5:149210284,chr5:149210278 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none HMG-box_domain(100%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) HMG_box(100%),HMG_box_2(100%)|RRM_1(100%) 10 1 22 260 21 ENST00000613459.4 ENST00000309241.10 downstream upstream duplicates(1),mismatches(2) AGCAAGACCCATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTGCCCAGGGCCAGGCAGGCCTTTTCCCTGAGTG___ATAAGACTCCCTCTGTGAGGACTTGTGGTCTGAAGCCAAGCACACTGAAGCAGCTGGGCCAGCCCATTCAACAGCCATCTGGCCCTGGTGAGGTGAAG|CTGCAGAAGCTCCTCCTGGCCACATCCTACCCAACATCAAGCTCTGACACCCAGAAGGAAGGGACCGCCTGGCGCCAGGCAGGCCTCAGATCTAAAAGTCAACGGCCTTGTGTTAAG___GCGGACAGCACCCAAGACAAGAAGGCTCCCATGATGCAGTCTCAG ARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVK|LQKLLLATSYPTSSSDTQKEGTAWRQAGLRSKSQRPCVKADSTQDKKAPMMQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Bladder exact TRUE Bladder Urothelial Carcinoma BLADDER no_match 149412166 FALSE 149227021 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5733 HMGXB3::PPARGC1B ENSG00000113716.13::ENSG00000155846.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 545 TRUE 999 TRUE 367 HMGXB3 ENSG00000113716.13 protein_coding + + chr5:150000046-150053142:+ chr5:150027117:+ chr5:149379609-149432705:+ chr5:149406680:+ PPARGC1B ENSG00000155846.17 protein_coding + + chr5:149730298-149855022:+ chr5:149832656:+ chr5:149109861-149234585:+ chr5:149212219:+ chr5:150028823,chr5:150028820 chr5:149830721,chr5:149830715 NA NA chr5:149408386,chr5:149408383 chr5:149210284,chr5:149210278 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none HMG-box_domain(100%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) HMG_box(100%),HMG_box_2(100%)|RRM_1(100%) 10 1 17 260 52 ENST00000613459.4 ENST00000309241.10 downstream upstream duplicates(2) TCCCTGCTCCTAAAAAACCTACAGG___AGtTGACCTGCTTACCCCTGGGTCCAGAGCTCCAGAGCTTAAAGGCAGAGCACGGGGCAAGCCCTCATTACTGGCTGCAGCAAGACCCATGAGAGCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTGCCCAGGGCCAGGCAGGCCTTTTCCCTGAGTG___ATAAGACTCCCTCTGTGAGGACTTGTGGTCTGAAGCCAAGCACACTGAAGCAGCTGGGCCAGCCCATTCAACAGCCATCTGGCCCTGGTGAGGTGAAG|GCGGACAGCACCCAAGACAAGAAGGCTCCCATGATGCAGTCTCAGAGCCGAAGTTGTACAGAACTACATAAGCACCTCACCTCGGCACAGTGCTGCCTGCAGGATCGGGGTCTGCAGCCACCATGCCTCCAGAGTCCCCGGCTCCCTGCCAAGGAGGACAAGGAGCCGGGTGAGGACTGCCCGAGCCCCCAGCCAGCTCCAGCCTCTCCCCaGGACTCCCTAGCTCTGGGCAGGGCAGACCCCGGTGCCCCGGTTTCCCAGGAAGACATGCAGG PAPKKPTGvDLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVK|ADSTQDKKAPMMQSQSRSCTELHKHLTSAQCCLQDRGLQPPCLQSPRLPAKEDKEPGEDCPSPQPAPASPqDSLALGRADPGAPVSQEDMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Bladder exact TRUE Bladder Urothelial Carcinoma BLADDER no_match 149412166 FALSE 149227021 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5734 HMGXB3::PPARGC1B ENSG00000113716.13::ENSG00000155846.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 999 TRUE 367 HMGXB3 ENSG00000113716.13 protein_coding + + chr5:150000046-150053142:+ chr5:150026881:+ chr5:149379609-149432705:+ chr5:149406444:+ PPARGC1B ENSG00000155846.17 protein_coding + + chr5:149730298-149855022:+ chr5:149836263:+ chr5:149109861-149234585:+ chr5:149215826:+ chr5:150028823,chr5:150028820 chr5:149830721,chr5:149830715 NA NA chr5:149408386,chr5:149408383 chr5:149210284,chr5:149210278 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none HMG-box_domain(100%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) HMG_box(100%),HMG_box_2(100%)|RRM_1(100%) 0 1 0 246 90 ENST00000613459.4 ENST00000309241.10 downstream upstream none GCAATTTTGCCAGCCCCAGTTAACGTGGGGCGAGGCAGCAGCATGGGACTGCCCAGGGCCAGGCAGGCCTTTTCCCTGAGTG|GACTCACCCCACCCACCAC...CCCTGAGGGCCTCTCACTCAAGGCCACCCCAGGGGCTGCCCACAAGCTGCCAAAGAAGCACCCAGAGCGAAGTGAGCTCCTGTCCCACCTGCGACATGCCA AILPAPVNVGRGSSMGLPRARQAFSLS|gLTPPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Bladder exact TRUE Bladder Urothelial Carcinoma BLADDER no_match 149412166 FALSE 149227021 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5742 LCORL::RAB2A ENSG00000178177.17::ENSG00000104388.15 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 548 FALSE NA FALSE NA LCORL ENSG00000178177.17 protein_coding - - chr4:17841187-18021876:- chr4:17909094:- chr4:17842810-18023499:- chr4:17910717:- RAB2A ENSG00000104388.15 protein_coding + + chr8:60516936-60623644:+ chr8:60618580:+ chr8:61429495-61536203:+ chr8:61531139:+ chr4:17900636,chr4:17900638 chr8:60595348,chr8:60595346 NA NA chr4:17902259,chr4:17902261 chr8:61507907,chr8:61507905 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Ras_family(6%) DUF3824(100%)|Arf(0%),Ras(0%) 8 9 11 49 533 ENST00000326877.8 ENST00000262646.12 upstream upstream duplicates(5),mismatches(1) CAGAAAATTACCTAAATGCACTCTTTCGAAAGAAAG___ATCTTCCTCAGAACTGTGATCCTAACATTCCCCTAGTTGCTCAGGAATTAATGAAAAAGATGATACGTCAATTTGCGATTGAGTACATTTCAAAAAGTGGTAAAACTCAAGAGAATAGAAATGGTTCAATTGGACCAAGTATAGTATGTAAAAGTATCCAAATGAATCAAGCAGAAAACTCCCTTCAGGAAGAGCAGGAAGGCCCCTTAGACCTCACTGTGAATCGAATGCAAGAACAAAATACTCAGCAAG|GCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATTCAAGAAGGAGTCTTTGACATTAATAATGAG___GCAAATGGCATTAAAATTGGCCCTCAGCATGCTGCTACCAATGCAACACATGCAGGCAATCAGGGAGGACAGCAGGCTG ENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQ|giy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5744 KMT2A::ATP5MG ENSG00000118058.25::ENSG00000167283.9 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 549 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ ATP5MG ENSG00000167283.9 protein_coding + + chr11:118401346-118433278:+ chr11:118431024:+ chr11:118272061-118303993:+ chr11:118301739:+ chr11:118483761 chr11:118425412 NA NA chr11:118354476 chr11:118296127 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CXXC_zinc_finger_domain(100%)|Mitochondrial_ATP_synthase_g_subunit(1%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)| 9 10 7 230 22 ENST00000710560.1 ENST00000690793.1 downstream upstream duplicates(1),low_entropy(1),mismappers(1),mismatches(1) CGTCGAGGAAAAGAGTGAAGAAGGGAATGTCTCGGCCCCTGGGCCTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG|AAAAAAAGCAGCACCTGAGGATTCTGAACAGTTCTCTGCTCAGTGATGATCAAGCCTTCCTTTGGACAAGCTTAAATAACTCAGCCACTGTTCTTTGTTGGAGGACTTTGGGACTACTGATGCAATGTGTCCACTTGGGGGCCCTTTGGAGAAAAAATTGCTAATTTCAGAGGGGCAGCCGCACCAGTGGTTAAGGAAATCCCTGGGGAGAAAATGTTTCTGTCTGGATTAGAGAGAAG VEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEK|KKSST* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other FALSE NA NA NA NA NA NA NA NA NA 5745 SLC26A6::PRKAR2A ENSG00000225697.13::ENSG00000114302.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 550 FALSE NA FALSE NA SLC26A6 ENSG00000225697.13 protein_coding - - chr3:48625723-48635493:- chr3:48627946:- chr3:48663156-48672926:- chr3:48665379:- PRKAR2A ENSG00000114302.17 protein_coding - - chr3:48744597-48847874:- chr3:48790627:- chr3:48782030-48885307:- chr3:48828060:- chr3:48627181,chr3:48627185,chr3:48627185 chr3:48792317,chr3:48792318,chr3:48792638 NA NA chr3:48664614,chr3:48664618,chr3:48664618 chr3:48829750,chr3:48829751,chr3:48830071 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none STAS_domain(48%),Sulfate_permease_family(100%)|Cyclic_nucleotide-binding_domain(100%) STAS(50%),Sulfate_transp(100%)|cNMP_binding(100%) 6 12 6 133 200 ENST00000337000.12 ENST00000265563.13 upstream downstream duplicates(1),mismatches(1) AGCAGCTGAAGCTGAAGCAACTGCAGAAAGAGGAGAAGCTTCGGAAACAG___GCTGCCTCCCCCAAGGGCGCCTCAGTTTCCATTAATGTCAACACCAGCCTTGAAGACATGAGGAGCAACAACGTTGAGGACTGCAAGATGATG|GTGATTCATCCTAAAACTGATGAACAGAGATGCAGACTTCAGGAAGCTTGCAAAGATATTCTCCTTTTCAAAAATCTTGATCAG___GAACAGCTTTCTCAAGTTCTCGATGCCATGTTTGAAAGGATAGTCAAAGCTGATGAGCATGTCATTGACCAAGGAGATGATGGAGACAACTTTTATGTCATAGAACG___GGGAACTTATGACATTTTAGTAACAAAAGATAATCAAACC QLKLKQLQKEEKLRKQAASPKGASVSINVNTSLEDMRSNNVEDCKMM|VIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6824 chr3:48633636-48633698:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5747 WDR70::NIPBL ENSG00000082068.9::ENSG00000164190.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDR70 ENSG00000082068.9 protein_coding + + chr5:37379285-37753435:+ chr5:37381685:+ chr5:37379387-37753537:+ chr5:37381787:+ NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:36953618:+ chr5:36876871-37066515:+ chr5:36953720:+ chr5:37390222,chr5:37390192,chr5:37390223 chr5:36897353,chr5:36896998,chr5:36897351 NA NA chr5:37390324,chr5:37390294,chr5:37390325 chr5:36897455,chr5:36897100,chr5:36897453 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |HEAT_repeat_associated_with_sister_chromatid_cohesion(100%),Sister_chromatid_cohesion_C-terminus(100%) |Cohesin_HEAT(100%),Nipped-B_C(100%) 10 6 7 458 193 ENST00000265107.9 ENST00000282516.13 downstream upstream duplicates(3),mismatches(1) GCTGGTTCTGGGGTGTGCGGCCAGCCATGGAGCGCTCTGGGCCCAGCGAAG___TGACAGGCTCAGACGCGTCGGGACCGGACCCGCAGCTTGCGGTCACCATGGGCTTCACGGGGTTCG___GTAAAAAAGCTCGCACATTTGACTTGGAAGCAATGTTTGAACAAACTCGAAGGACAGCTGTGGAAAGAAGTCGCAAAACACTGG|TGTTTGGGAAATGGGAAGTAATGACAGCTGGCACCTGAACTAAGTACTTTTATAGGCAACACCATTCCAGAAATTCAGGATGAATGGGGATATGCCCCATGTCCCCATTACTACTCTTGCGGGGATTGCTAGTCTCACAGACC___TCCTGAACCAGCTGCCTCTTCCATCTC MERSGPSEVTGSDASGPDPQLAVTMGFTGFGKKARTFDLEAMFEQTRRTAVERSRKTL|vfgkwevmtagt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5748 TPD52::PAG1 ENSG00000076554.16::ENSG00000076641.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1001 TRUE 368 TPD52 ENSG00000076554.16 protein_coding - - chr8:80034745-80231232:- chr8:80171425:- chr8:80946980-81143467:- chr8:81083660:- PAG1 ENSG00000076641.4 protein_coding - - chr8:80967810-81112068:- chr8:81070170:- chr8:81880045-82024303:- chr8:81982405:- chr8:80094638,chr8:80094640 chr8:81097191,chr8:81097190 NA NA chr8:81006873,chr8:81006875 chr8:82009426,chr8:82009425 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Phosphoprotein_associated_with_glycosphingolipid-enriched(100%) |PAG(100%) 7 14 1 1905 29 ENST00000518937.6 ENST00000220597.4 upstream downstream duplicates(1),low_entropy(1),mismatches(2) CGGGCGATCCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAG|AAAACACGAGATTTTTCTCCTATTTCAGCAGTTGGCCACAACTTCATTGCTGGGAAAAG___GCCAAGAAAGAAGAGAGAACTCTCACCACAACATTTCAAAGGGAATACATTGCCAGAACTTGGAATACTCTACTGGACAAACATTTCCTCCAAG___GACACAGCTCTCTGCCTCCATGTCACCACCTTTGAAGGACTGACTGATTCCCTCGGCTGGTGCCAGTGCCTGCTCCTGCCATGGGGCCCGCGG MDRGEQ|entrffsyfsswpqlhcwekakkeertltttfqreyiartwntlldkhflqghsslppchhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5749 TPD52::PAG1 ENSG00000076554.16::ENSG00000076641.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1001 TRUE 368 TPD52 ENSG00000076554.16 protein_coding - - chr8:80034745-80231232:- chr8:80119815:- chr8:80946980-81143467:- chr8:81032050:- PAG1 ENSG00000076641.4 protein_coding - - chr8:80967810-81112068:- chr8:81070170:- chr8:81880045-82024303:- chr8:81982405:- chr8:80094638,chr8:80094640 chr8:81097191,chr8:81097190 NA NA chr8:81006873,chr8:81006875 chr8:82009426,chr8:82009425 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none |Phosphoprotein_associated_with_glycosphingolipid-enriched(100%) |PAG(100%) 1 0 1 22 29 ENST00000523753.5 ENST00000220597.4 upstream downstream none GCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGtTtCGAGCCGGGACGGGCTGCAGGCGGGGGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGgCcTGGA...GAATTTCTGGCTTGAATTAGGGAAAGATTTATCTTTTCTCCACTCATATAAAAT|AAAACACGAGATTTTTCTCCTATTTCAGCAGgTGGCCtCAACTTCAT...AAAG___GCCAAGAAAGAAGAGAGAACTCTCACCACAACATTTCAAAGGGAATACATTGCCAGAACTTGGAATACTCTtCTGGACAAACATTTCCTCCAAG___GAC NFWLELGKDLSFLHSYKi|kheifllfqqvasts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5750 EFNA5::GRIA1 ENSG00000184349.14::ENSG00000155511.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EFNA5 ENSG00000184349.14 protein_coding - - chr5:107376894-107670937:- chr5:107670489:- chr5:106712595-107006638:- chr5:107006190:- GRIA1 ENSG00000155511.19 protein_coding + - chr5:153489615-153813869:+ chr5:153751093:- chr5:152869175-153193429:+ chr5:153130653:- chr5:107454292,chr5:107454298 chr5:153759583,chr5:153759586 NA NA chr5:106789993,chr5:106789999 chr5:153139143,chr5:153139146 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ephrin(10%)| Ephrin(0%)| 0 1 19 119 71 ENST00000333274.11 unknown upstream downstream duplicates(4),mismappers(14),mismatches(4) TTTTTATTTATTCATATTTATTTGGCGCCCGCTCTCTCTCTGTCCCTTTGCCTGCCTCCCTCCCTCCGGATCCCCGCTCTCTCCCCGGAGTGGCGCGTCGGGGGCTCCGCCGCTGGCCAGGCGTGATGTTGCACGTGGAGATGTTGACGCTGGTGTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGGGCTCCAAGGCCGTCGCCGACCGCTACGCTGTCTACTGGAACAGCAGCAACCCCAG|AGTCTCGCTCTTGTTGTCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG___CTCCCCCTTGCCTTCCTCCGTGAGTGGGAGCAGCCTGAG MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPr|vslllsrlecsgvisahcnlclpgssnspasasqvagitappclpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5752 ENSG00000228629::LSR ENSG00000228629.2::ENSG00000105699.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 551 TRUE 1002 TRUE 369 ENSG00000228629 ENSG00000228629.2 lncRNA + + chr19:36528318-36535235:+ chr19:36534992:+ chr19:37019220-37026137:+ chr19:37025894:+ LSR ENSG00000105699.17 protein_coding + + chr19:35248330-35267964:+ chr19:35258945:+ chr19:35739233-35758867:+ chr19:35749848:+ chr19:36535401,chr19:36535399 chr19:35252239,chr19:35252234 NA NA chr19:37026303,chr19:37026301 chr19:35743142,chr19:35743137 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Lipolysis_stimulated_receptor_(LSR)(100%) |LSR(100%) 12 2 6 22 1296 ENST00000446262.1 ENST00000360798.7 downstream upstream duplicates(1),low_entropy(1),mismatches(1) GGTCGGCTCGGAGACTACAGGATCAGGAGGAGGTTGGAGGTGAAGCtTCTGGAATCCG___GTAAAGATGGACACCTGCATGAGGGAAGGAATATGTGAGCAGCTTCCATTTCCCTTCCATGGTCTTCTCAGCTTCCTCCAACAGTAGATTGTTCAGCCTCCCTAAAGCAGGAGAAGAGGAAGGGGAAGAAAG|ATGCTGACCTGACCTTTGACCAGACGGCGTGGGGGGACAGTGGTGTGTATTACTGCTCCGTGGTCTCAGCCCAGGACCTCCAGGGGAACAATGAGGCCTACGCAGAGCTCATCGTCCTTG___TGTATGCCGCCGGCAAAGCAGCCACCTCAGGTGTTCCCAGCATTTATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5753 ENSG00000228629::LSR ENSG00000228629.2::ENSG00000105699.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1002 TRUE 369 ENSG00000228629 ENSG00000228629.2 lncRNA + + chr19:36528318-36535235:+ chr19:36534992:+ chr19:37019220-37026137:+ chr19:37025894:+ LSR ENSG00000105699.17 protein_coding + + chr19:35248330-35267964:+ chr19:35262546:+ chr19:35739233-35758867:+ chr19:35753449:+ chr19:36535401,chr19:36535399 chr19:35252239,chr19:35252234 NA NA chr19:37026303,chr19:37026301 chr19:35743142,chr19:35743137 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Lipolysis_stimulated_receptor_(LSR)(98%) |LSR(3%) 1 0 2 22 851 ENST00000446262.1 ENST00000602122.5 downstream upstream none GGTAAAGATGGACACCTGCATGAGGGAAGGAATATGTGAGCAGCTTCCATTTCCCTTCCATGGTCTTCTCAGCTTCCTCCAACAGTAGATTGTTCAGCCTCCCTAAAG...AGAGGAAGGGGAAGAAAG|ACTGGCTCTTCGTGGTTGTGGTATGCCTGGCTGCCTTCCTCATCTTCCTCCTCCTGGGCATCTGCTGGTGCCAGTGCcGCCCG...TGCTGCCCCGAGGCCC___TGTATGCCGCCGGCAAAGCAGCCACCTCAGGTGTTCCCAGCATTTATGCCCCCAGCACCTATGCCCACCTGTCTCCCGCCAAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5754 TRAPPC11::TENM3-AS1 ENSG00000168538.16::ENSG00000177822.10 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRAPPC11 ENSG00000168538.16 protein_coding + + chr4:183659267-183713594:+ chr4:183675237:+ chr4:184580420-184634747:+ chr4:184596390:+ TENM3-AS1 ENSG00000177822.10 lncRNA - + chr4:181874438-182145249:- chr4:181911126:+ chr4:182795591-183066402:- chr4:182832279:+ chr4:183676798,chr4:183676798 chr4:181902430,chr4:181902427 NA NA chr4:184597951,chr4:184597951 chr4:182823583,chr4:182823580 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 6 8 5 214 14 ENST00000357207.8 unknown downstream upstream duplicates(2),mismatches(1) GCAGCTTTATGCAATGCATGTGAACTCTCAGGAAAGTCTTTGTTTGTACTGCCGCACACTGACCACCTTGTGGGTTATATTATAAG___ATTGGAAAATGCCTTTTATGAACATGCACAGACTTATTACTACACTGAGATCAGAAGAGTGAAATCTCATAAAGAATTTTTGAATAAAACAACACACCAG___CTTTTATTTGTTAGGCATCAGTTCAAAATAGCTTTCTTCAGTGAGTTGAAACAAGATACACAAAATGCGCTGAA|ATGAGAAAAAGCGGGTAATTTGGTCAGAACACATGATCGGTTAATGTGTAGAGACAAAATTAGCGCTGAAACCTGCCTGCATTCTTCATTTCTTTTCTATCACTTCAAGCTGCATTTCCAATGAACTCCAAAGAAAAGGTCATCTGGAAAATTGGGCGTCTTCAATAAATGGATTAAGGTGGTGGTTGACAAACCTTTGAAGAACTGCATGGAAAAAGATGCAAAGAAAGACATGCTGTGTTGTTTTTTTC AALCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALk|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5758 KCNS3::WRNIP1 ENSG00000170745.12::ENSG00000124535.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 552 TRUE 1003 TRUE 370 KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17878806:+ chr2:18059114-18542882:+ chr2:18060073:+ WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2768691:+ chr6:2765627-2787186:+ chr6:2768925:+ chr2:17883254,chr2:17883254 chr6:2767743,chr6:2767740 NA NA chr2:18064521,chr2:18064521 chr6:2767977,chr6:2767974 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |AAA_C-terminal_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(90%),MgsA_AAA+_ATPase_C_terminal(100%) |AAA(40%),AAA_14(39%),AAA_2(38%),AAA_5(39%),AAA_assoc_2(100%),DUF815(7%),MgsA_C(100%),RuvB_N(38%),Viral_helicase1(39%) 3 2 10 51 614 ENST00000304101.9 ENST00000380773.9 downstream upstream duplicates(2),mismatches(1) CGACGCGGGCCACCCCGCTCTCCTCGCCGCCGCGGCGGCAGGCGCGGGGCCGCGCCGCGAGGCCTGATCCCTGCAGCGCGGGCAGGCGGCGTCGCAGAGCGGAGCTAGCTGGATGCGTCCGGACTCCTGCAG|ACCACTCTGGCTCACATCATAGCCAGCAACAGCAAGAAACATAGCATAAGGTTTGTGACATTATCTGCAACAAATGCCAAGACAAATGATGTGCGAGATGTCATAAAAC...AAAAGGAAAACCATCCTTTTTATTGATGAGATTCATCGGTTCAATAAATCTCAGCAG___GACACTTTCCTTCCTCACGTGGAATGTGGGACGATCACTCTGATTGGGGCAACCACTGAAAACCCTTCCTTCCAGGTCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5759 KCNS3::WRNIP1 ENSG00000170745.12::ENSG00000124535.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 553 TRUE 1003 TRUE 370 KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17878806:+ chr2:18059114-18542882:+ chr2:18060073:+ WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2779263:+ chr6:2765627-2787186:+ chr6:2779497:+ chr2:17883254,chr2:17883254 chr6:2767743,chr6:2767740 NA NA chr2:18064521,chr2:18064521 chr6:2767977,chr6:2767974 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |AAA_C-terminal_domain(100%),MgsA_AAA+_ATPase_C_terminal(100%) |AAA_assoc_2(100%),MgsA_C(100%) 2 4 4 51 804 ENST00000304101.9 ENST00000380773.9 downstream upstream duplicates(1),low_entropy(2) CGCGGGCCACCCCGCTCTCCTCGCCGCCGCGGCGGCAGGCGCGGGGCCGCGCCGCGAGGCCTGATCCCTGCAGCGCGGGCAGGCGGCGTCGCAGAGCGGAGCTAGCTGGATGCGTCCGGACTCCTGCAG|GCCCGCCATGTTCATAGAGGATAAAGCAGTAGACACCCTGGCTTACCTCAGTGACGGTGACGCCCGAGCTGGGTTGAACGGACTGCAGCTGGCGGTGCTGGCTAGGTTAAGCTCTAGGAAGATGTTCTGTAAGAAGAGTGGGCAATCCTATTCTCCCAGTAGAGTTCTGATCACAGAGAATGACGTGAAGGAGGGCCTACAGCGATCCCACATTTTATATGACCGGGCAG___GTGAGGAGCATTACAACTGCATCTCCGCCCTGCACAAGTCCATGCGGGGCTCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5760 WRNIP1::KCNS3 ENSG00000124535.16::ENSG00000170745.12 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1004 TRUE 371 WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2766444:+ chr6:2765627-2787186:+ chr6:2766678:+ KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17917680:+ chr2:18059114-18542882:+ chr2:18098947:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none ATPase_family_associated_with_various_cellular_activities_(AAA)(9%),Werner_helicase-interacting_protein_1_ubiquitin-binding_domain(100%)|BTB/POZ_domain(100%),Ion_transport_protein(100%) AAA(0%),AAA_14(0%),AAA_2(1%),AAA_5(0%),DUF815(6%),RuvB_N(3%),Viral_helicase1(0%),zf-WRNIP1_ubi(100%)|BTB_2(100%),Ion_trans(100%),Ion_trans_2(100%) 0 4 1 671 62 ENST00000380773.9 ENST00000403915.5 downstream upstream mismatches(1) CGGCGAGGACGACCCGGGGCACTGGGACGCGGACGCTGCCGAAGCCGCCACCGCCTTCGGGGCCAGcGGCGGGGGgCGCCCcggCaCCCcGGCGC...CAGGATTACTTCGGGCAGAGCAAGGCCGTGGGCCAGGATACCCTGCTGCGCTCGCTCCTGGAGACCAACGAAATCCCCTCGCTTATCCTGTGGGGGCCGCCGGGCTGCGGCAAG|GTGAGAGTGATTTTCCAGTGATTGCTTTGGCCTGTACAACCAGAGAACAGGATTCTTCCCTTCTTTTTGGCCACCAAATGCCTATGTGCACCACACATTCCAGTGTGCTGAGAAGGGCAGAGCTTCTTGGATGATGATGGACGTCCCACCGGGCAGGATGAAGGCAGAGCGTGTGGCATCTCCACCTCAAGG___GTGCAGCCTGATCTTCCTCTTCTCCCTTGCCAGCCAG QDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGK|vrvifq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5761 WRNIP1::KCNS3 ENSG00000124535.16::ENSG00000170745.12 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1004 TRUE 371 WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2766444:+ chr6:2765627-2787186:+ chr6:2766678:+ KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17930950:+ chr2:18059114-18542882:+ chr2:18112217:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none ATPase_family_associated_with_various_cellular_activities_(AAA)(9%),Werner_helicase-interacting_protein_1_ubiquitin-binding_domain(100%)|BTB/POZ_domain(100%),Ion_transport_protein(100%) AAA(0%),AAA_14(0%),AAA_2(1%),AAA_5(0%),DUF815(6%),RuvB_N(3%),Viral_helicase1(0%),zf-WRNIP1_ubi(100%)|BTB_2(100%),Ion_trans(100%),Ion_trans_2(100%) 0 2 0 671 84 ENST00000380773.9 ENST00000403915.5 downstream upstream none AACGAAATCCCCTCGCTTATCCTGTGGGGGCCGCCGGGCTGCGGCAAG|GTGCAGCCTGATCTTCCTCTTCTCCCTTGCCAGCCAGCACTCTGCCTTCTGTATCCACCATGGTGTTTGGTGAGTTTTTC NEIPSLILWGPPGCGK|vqpdlpllpcqpalcllyppwclvsf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5762 NOS1AP::IFI16 ENSG00000198929.13::ENSG00000163565.20 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOS1AP ENSG00000198929.13 protein_coding + + chr1:162069691-162370475:+ chr1:162070282:+ chr1:162039481-162340265:+ chr1:162040072:+ IFI16 ENSG00000163565.20 protein_coding + + chr1:158999968-159055155:+ chr1:159010003:+ chr1:158969758-159024945:+ chr1:158979793:+ chr1:162073425,chr1:162073423 chr1:159003286,chr1:159003281 NA NA chr1:162043215,chr1:162043213 chr1:158973076,chr1:158973071 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Phosphotyrosine_interaction_domain_(PTB/PID)(2%)|HIN-200/IF120x_domain(100%),PAAD/DAPIN/Pyrin_domain(100%) PID(0%)|HIN(100%),PYRIN(100%) 4 5 4 37 219 ENST00000361897.10 ENST00000566111.5 downstream upstream duplicates(1),mismatches(2) GCCGCGCCCAGCTCCAGTCTCCCCTCCCCGGGGTCTCGCCAGCCCCTTCCTGCAGCCGCCGCCTCCGAAGGAGCGGGTCCGCCGCGGGTAACCATGCCTAGCAAAACCAAGTACAACCTTGTGGACGATGGGCACGACCTGCGGATCCCCTTGCACAACGAGGACGCCTTCCAGCACGGCATCTGCTTTGAGGCCAAG|ATACTTCATTTTCTTAGCGTTTCTGGAGATTACAACATCCTGCGGTTCCGTTTCTGGGAACTTTACTGATTTATCTCCCCCCTCACACAAATAAGCATTGATTCCTGCATTTCTGAAGATCTCAAGATCTGGACTACTGTTGAAAAAATTTCC MPSKTKYNLVDDGHDLRIPLHNEDAFQHGICFEAK|ilhflsvsgdynilrfrfwely* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5765 EFHD1::ENSG00000237126 ENSG00000115468.13::ENSG00000237126.8 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EFHD1 ENSG00000115468.13 protein_coding + + chr2:232606057-232682776:+ chr2:232662949:+ chr2:233470767-233547486:+ chr2:233527659:+ ENSG00000237126 ENSG00000237126.8 lncRNA - + chr2:232580948-232611971:- chr2:232602560:+ chr2:233445658-233476681:- chr2:233467270:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none EF-hand_domain_pair(96%)| EF-hand_5(86%),EF-hand_6(100%),EF-hand_7(75%),EF-hand_8(1%)| 0 6 7 1244 84 ENST00000264059.8 unknown downstream upstream mismappers(19),mismatches(3) TCCCGGAGTTCAGCCGCCGCCTCATCAAGGACCTGGAGAGCATGTTCAAACT___GTATGACGCTGGGCGGGATGGCTTCATCGACCTGATGGAGCTGAAGCTGATGATGGAGAAGCTGGGGGCCCCCCAGACCCACCTGGGCCTGAAGAGCATGATCAAGGAGGTGGATGAGGACTTCGATGGCAAGCTCAGCTTCCGGGAG|GATCTCGCTCTGGCACCCAGGCTGGAGTGCAGTGGCTCATTGCAACCTCAACTTACTAGGATGAAGCAATCCTCCTGCCTCAACCTCCCAGCTAGCTAGGACTGACTACAGGCGCATGCCACCATACCTGGCTAGTTTGTTTGTTTGTTTATTTTTTGAGATGGAGTCTCACACTGTCCCCCAGGCTAGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCATGCCACCACGCCTGGCTAATTTTTCGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTTGAACTCCTGACCTTG PEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFRE|dlalaprlecsgslqpqltrmkqssclnlpas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5766 COL24A1::GSTM2 ENSG00000171502.15::ENSG00000213366.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1005 TRUE 372 COL24A1 ENSG00000171502.15 protein_coding - - chr1:85729233-86156943:- chr1:85816788:- chr1:86194916-86622626:- chr1:86282471:- GSTM2 ENSG00000213366.13 protein_coding + + chr1:109668022-109709551:+ chr1:109708481:+ chr1:110210644-110252173:+ chr1:110251103:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Collagen_triple_helix_repeat_(20_copies)(89%)| Collagen(95%),Laminin_G_2(100%)|GST_C(0%),GST_C_3(0%) 1 7 4 63 37 ENST00000370571.7 ENST00000369831.6 upstream upstream none CTAAGAGGTGCCACTGGACAACAAGGACCCCCA___GGCGAACCAGGTGACCAGGGTGAACAAGGACTAAAAGGAGAGAGAGGATCTGAA___GGTAATAAGGGGAA...CCTGGTCCTTCTGGGAAACCTGGGATTCCT___GGACTTCAAGGCCTACTTGGGCCAAAAGGCATACAAGGATACCATGGAGCAGATGGCATTTCAGGAAACCCTGGAAAAATTGGGCCACCAGGAAAACAGGGACTTCCT|GAAAAGTGTAATGTTGGTTGGAGCTCGAGAAGGAATCTGGATACTGTGTGCCGGACCAGCCAAAGAATCCTGTGTCAAAACCGAGAGAACGAATAAGCCTTCATCACCATGGCACATTTATATAAAAAGAAAGGGAGAGATGTTGCGGGAAGTCAGGGACCCCGAATGGAGGGACTGACTGGAGCCGCGGCAGAGGAACATAAATTGCAAATATTTCATTTTAATATGGACATTTATCAGTTCCCAAATTATTACTTTTTACATTTCTTACGCCTGTCTTACTTTAATCTCT PGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLP|EKCNVGWSSRRNLDTVCRTSQRILCQNRENE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5767 COL24A1::GSTM2 ENSG00000171502.15::ENSG00000213366.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1005 TRUE 372 COL24A1 ENSG00000171502.15 protein_coding - - chr1:85729233-86156943:- chr1:85816788:- chr1:86194916-86622626:- chr1:86282471:- GSTM2 ENSG00000213366.13 protein_coding + + chr1:109668022-109709551:+ chr1:109668925:+ chr1:110210644-110252173:+ chr1:110211547:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Collagen_triple_helix_repeat_(20_copies)(89%)|Glutathione_S-transferase__C-terminal_domain(100%),Glutathione_S-transferase__N-terminal_domain(55%) Collagen(95%),Laminin_G_2(100%)|GST_C(100%),GST_C_3(100%),GST_N(44%) 0 0 4 63 93 ENST00000370571.7 ENST00000369831.6 upstream upstream multimappers(5) CTAAAGGAGAAAAG___GGCTACCCAGGAGAAGATAGCACAGTCCTAGGACCACCTGGGCCTCGAGGTGAACCA___GGTCCAGTGGGGGACCAAGGAGAGAGAGGA...CCTGGTCCTTCTGGGAAACCTGGGATTCCT___GGACTTCAAGGCCTACTTGGGCCAAAAGGCATACAAGGATACCATGGAGCAGATGGCATTTCAGGAAACCCTGGAAAAATTGGGCCACCAGGAAAACAGGGACTTCCT|CTCCTGATTATGACAGAAGCCAGTGGCTGAATGAAAAATTCAAGCTGGGCCTGGACTTTCCCAAT___CTGCCCTACTT PGPSGKPGIPGLQGLLGPKGIQGYHGADGISGNPGKIGPPGKQGLP|llimteasg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5768 COL24A1::GSTM2 ENSG00000171502.15::ENSG00000213366.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1005 TRUE 372 COL24A1 ENSG00000171502.15 protein_coding - - chr1:85729233-86156943:- chr1:85816788:- chr1:86194916-86622626:- chr1:86282471:- GSTM2 ENSG00000213366.13 protein_coding + + chr1:109668022-109709551:+ chr1:109683207:+ chr1:110210644-110252173:+ chr1:110225829:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion low none Collagen_triple_helix_repeat_(20_copies)(89%)| Collagen(95%),Laminin_G_2(100%)|GST_C(65%),GST_C_3(65%),GST_N(14%) 0 0 0 63 23 ENST00000370571.7 ENST00000442650.5 upstream upstream mismatches(1) CAGGAAAACAGGGACTTCCT|CTTCCCTCATCCCTGCTGCTCCTGATCCCCGTCCACAGACCCACTTTCCCCGCTGGTGTGATCCTTGTGGCCACTATGGCAGCTACTTTGGAGAGCCGCTAGTCCAGTCCTTCCCG GKQGLP|lpssllllipvhrptfpagvilvatmaatlesr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5769 COL24A1::GSTM2 ENSG00000171502.15::ENSG00000213366.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1005 TRUE 372 COL24A1 ENSG00000171502.15 protein_coding - - chr1:85729233-86156943:- chr1:85816788:- chr1:86194916-86622626:- chr1:86282471:- GSTM2 ENSG00000213366.13 protein_coding + + chr1:109668022-109709551:+ chr1:109701652:+ chr1:110210644-110252173:+ chr1:110244274:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion low none Collagen_triple_helix_repeat_(20_copies)(89%)| Collagen(95%),Laminin_G_2(100%)|GST_C(17%),GST_C_3(17%) 0 0 0 63 23 ENST00000370571.7 ENST00000460717.7 upstream upstream mismatches(1) CAGGAAAACAGGGACTTCCT|CTTCCCTCATCCCTGCTGCTCCTGATCCCCGTCCACAGACCCACTTTCCCCGCTGGTGTGATCCTTGTGGCCACTATGGCAGCTACTTTGGAGAGCCGCTAGTCCAGTCCTTCCCG GKQGLP|lpssllllipvhrptfpagvilvatmaatlesr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5770 ZNF484::FGD3 ENSG00000127081.14::ENSG00000127084.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1006 TRUE 373 ZNF484 ENSG00000127081.14 protein_coding - - chr9:92844182-92878038:- chr9:92855811:- chr9:95606464-95640320:- chr9:95618093:- FGD3 ENSG00000127084.19 protein_coding + + chr9:92947523-93036236:+ chr9:92954010:+ chr9:95709805-95798518:+ chr9:95716292:+ chr9:92849829,chr9:92849829,chr9:92849829,chr9:92849829,chr9:92849970,chr9:92848991 chr9:92952479,chr9:92952456,chr9:92952429,chr9:92952426,chr9:92952450,chr9:92953146 NA NA chr9:95612111,chr9:95612111,chr9:95612111,chr9:95612111,chr9:95612252,chr9:95611273 chr9:95714761,chr9:95714738,chr9:95714711,chr9:95714708,chr9:95714732,chr9:95715428 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none KRAB_box(100%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(100%) KRAB(100%)|FYVE(100%),PH(100%),RhoGEF(100%) 1 1 10 74 1 ENST00000375495.8 unknown upstream upstream mismatches(1) CAACAATTAGACCTTGCTCAGAAAAGCCTGTACAGAGAAGTGATGCTGGAAAACTATTTCAACTTGATCTCAGTGG___GATGTCAAGTTCCCAAACCAGAAGTCATCTTCAGCTTGGAACAAGAAGAGCCATGTATGTTGGATGGTGAGATCCCCAGTCAGAGCCGTCCAG|GTTGGCTTTCCTCCCAAATGCAAATATAATGTTCTACGTAGAAATTTATATGTTACTGAG...GGTCACTCTCAGGGTTTCACACAGCCTCTCTGCCAGGAGCTTTCATTTCCTTGGGTCTTGTCTATTGTTAGGTCgCATGTTGAGTAGGATTTGTCTTGGAGC QQLDLAQKSLYREVMLENYFNLISVGCQVPKPEVIFSLEQEEPCMLDGEIPSQSRP|gwlssqmqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5771 ZNF484::FGD3 ENSG00000127081.14::ENSG00000127084.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1006 TRUE 373 ZNF484 ENSG00000127081.14 protein_coding - - chr9:92844182-92878038:- chr9:92855811:- chr9:95606464-95640320:- chr9:95618093:- FGD3 ENSG00000127084.19 protein_coding + + chr9:92947523-93036236:+ chr9:92975238:+ chr9:95709805-95798518:+ chr9:95737520:+ chr9:92849829,chr9:92849829,chr9:92849829,chr9:92849829,chr9:92849970,chr9:92848991 chr9:92952479,chr9:92952456,chr9:92952429,chr9:92952426,chr9:92952450,chr9:92953146 NA NA chr9:95612111,chr9:95612111,chr9:95612111,chr9:95612111,chr9:95612252,chr9:95611273 chr9:95714761,chr9:95714738,chr9:95714711,chr9:95714708,chr9:95714732,chr9:95715428 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none KRAB_box(100%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(100%) KRAB(100%)|FYVE(100%),PH(100%),RhoGEF(100%) 1 0 4 74 5 ENST00000375495.8 ENST00000375482.8 upstream upstream none GTCCTGTTCTGGTTCTTGCGACTATAGaCACCTCCCGAGGCAAATGACCACTGTCCTGAGAGGACGgGGGTGAGGGGCAG___ATTTCTGCCCCTTTGTCCGA...GCCTGTACAGAGAAGTGATGCTGGAAAACTATTTCAACTTGATCTCAGTGG___GATGTCAAGTTCCCAAACCAGAAGTCATCTTCAGCTTGGAACAAGAAGAGCCATGTATGTTGGATGGTGAGATCCCCAGTCAGAGCCGTCCAG|TACCTCCTAAATG...GAAGAGATTTTCAAGGAAACCATCTACCGTGTGCAAGCTCCTGCCGGCCAACCCCAGACCCCAGCACGGAGCCAGGCGCCTGTGCCCGCCaACCCTCAGCATCCTCCTCAGAAAGGCTGGTGGCATCAG___GAAGCCCCTGGCCAGCCTCCACCTGAG LYREVMLENYFNLISVGCQVPKPEVIFSLEQEEPCMLDGEIPSQSRP|vppk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5773 SSBP2::EDIL3-DT ENSG00000145687.17::ENSG00000250320.7 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SSBP2 ENSG00000145687.17 protein_coding - - chr5:81412804-81751797:- chr5:81750981:- chr5:80708623-81047616:- chr5:81046800:- EDIL3-DT ENSG00000250320.7 lncRNA + - chr5:84382424-84490765:+ chr5:84473161:- chr5:83678242-83786583:+ chr5:83768979:- chr5:81694256,chr5:81694261 chr5:84473993,chr5:84473995 NA NA chr5:80990075,chr5:80990080 chr5:83769811,chr5:83769813 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 9 2 61 18 ENST00000320672.9 unknown upstream downstream low_entropy(1),mismatches(2) ATGGGTTGACAGGTGCGTGACAGTGGGAGCTGCTCTCGGCACAAGCATGTACGGCAAAGGCAAGAGTAACAGCAGCGCCGTCCCGTCCGACAGCCAGGCCCGGGAGAA|GGGTCAAGATGGGAGAATATAAATCTGAATGAAGCATATATCCTGTCCCAATGAGTTTACAAGTCTGAGAAGAGACACATGCAAAGGAGCGCATACTAAGACAGAAAGGAGACATTTTCAAGAAACCAAGATGAGTTCAACATGACTACAGCATAAAGCTAATTGGGACTGGGAAAGAGTTAAGGCTAGAAGTTTGAAGGAGTTGACATGAGAGAGCTGGTGTATGCCATGCTAAAATAATTCTTTT MYGKGKSNSSAVPSDSQAREk|gqdgri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5774 ACO2::PI4KA ENSG00000100412.17::ENSG00000241973.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACO2 ENSG00000100412.17 protein_coding + - chr22:41447830-41529273:+ chr22:41518650:- chr22:41843834-41925277:+ chr22:41914654:- PI4KA ENSG00000241973.11 protein_coding - - chr22:20707691-20859417:- chr22:20753180:- chr22:21061979-21213705:- chr22:21107468:- chr22:41516786,chr22:41516789 chr22:20759722,chr22:20759722 NA NA chr22:41912790,chr22:41912793 chr22:21114010,chr22:21114010 NA NA antisense sense unknown exon CDS/splice-site deletion/3'-3' high none |Phosphatidylinositol_3-_and_4-kinase(100%),Phosphoinositide_3-kinase_family__accessory_domain_(PIK_domain)(100%) |PI3Ka(100%),PI3_PI4_kinase(100%),PI4K_N(30%) 3 1 7 9 153 unknown ENST00000255882.11 upstream downstream duplicates(1) TCTGCATCCGGAGCCTCCAGCCTGAACTTCTTGCCATCCGTGCCCGTCAG___TAGAGACGGGGTTTCACTATGTTGGACAGGCTGGTCTTGAACTGCTGACCTCAACTGACCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGCTGTGAGCCACCACCCGGCCCTCA|GGATGATGCAGTGTGTGATTGCAGTCGCGGACAAAGTATTCGATGCCTTCCTGAACATGATGGCGGATAAA___GCCAAGACCAAGGAGAACGAGGAGGAGCTGGAGCGGCACGCTCAGTTCCTGTTGGTGAACTTCAACCACATCCACAAGAGGATAAGGAGGGTGGCAGACAAGTATCTATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5779 ATP6AP1L::MSH3 ENSG00000205464.13::ENSG00000113318.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1009 TRUE 374 ATP6AP1L ENSG00000205464.13 transcribed_unitary_pseudogene + + chr5:82279462-82386977:+ chr5:82281011:+ chr5:81575281-81682796:+ chr5:81576830:+ MSH3 ENSG00000113318.11 protein_coding + + chr5:80654652-80876815:+ chr5:80778720:+ chr5:79950471-80172634:+ chr5:80074539:+ chr5:82292228,chr5:82292396,chr5:82292227 chr5:80778215,chr5:80778294,chr5:80778211 NA NA chr5:81588047,chr5:81588215,chr5:81588046 chr5:80074034,chr5:80074113,chr5:80074030 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |MutS_domain_III(21%),MutS_domain_V(100%) |MutS_III(15%),MutS_V(100%) 2 2 3 24 61 ENST00000380167.8 ENST00000265081.7 downstream upstream duplicates(2) ACTTGGGGATGGGGGTGGCTACTCTGGATAGGGTAGTTTAAGGTGACATCTCTGTGCAGATGTAGAATGGGCTAGTGCTTTCTAAGAACTGAAAGATCAGT...CTGAGGAGTAGTGTGGCATTAGATGGGGTCTGAGAGTTACACAGGAACATGTGGAGCCTGTAGGCCATG___CAAGGCCATCAGTGAAGAGAAAGAGTGGGAGAAAAAGGTTTGAGGAGAGAAG|CACAAAAGCTGTGAGCCGCTTTCACTCTCCTTTTATTGTAGAAAATTACAGACATCTGAATCAGCTCCGGGAGCAGCTAGTCCTTGACTGCAGTGCTGAATGGCTTGATTTTCTAGA___GAAATTCAGTGAACATTATCACTCCTTGTGTAAAGCAGTGCATCACCTAGCAACTGTTGACTGCATTTTCTCCCTGGCCAAGGTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5780 ATP6AP1L::MSH3 ENSG00000205464.13::ENSG00000113318.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1009 TRUE 374 ATP6AP1L ENSG00000205464.13 transcribed_unitary_pseudogene + + chr5:82279462-82386977:+ chr5:82281011:+ chr5:81575281-81682796:+ chr5:81576830:+ MSH3 ENSG00000113318.11 protein_coding + + chr5:80654652-80876815:+ chr5:80787565:+ chr5:79950471-80172634:+ chr5:80083384:+ chr5:82292228,chr5:82292396,chr5:82292227 chr5:80778215,chr5:80778294,chr5:80778211 NA NA chr5:81588047,chr5:81588215,chr5:81588046 chr5:80074034,chr5:80074113,chr5:80074030 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |MutS_domain_III(8%),MutS_domain_V(100%) |MutS_III(0%),MutS_V(100%) 1 1 3 24 101 ENST00000380167.8 ENST00000265081.7 downstream upstream duplicates(1) CTGAGGAGTAGTGTGGCATTAGATGGGGTCTGAGAGTTACACAGGAACATGTGGAGCCTGTAGGCCATG___CAAGGCCATCAGTGAAGAGAAAGAGTGGGAGAAAAAGGTTTGAGGAGAGAAG|GAAATTCAGTGAACATTATCACTCCTTGTGTAAAGCAGTGCATCACCTAGCAACTGTTGACTGCATTTTCTCCCTGGCCAAGGTCGCTAAGCAAGGAGATTACTGCAG___ACCAACTGTACAAGAAGAAAGAAAAATTGTAATAAAAAATGGAAGGCACCCTGTGATTGATGTGTTGCTGGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5782 FBXL17::PJA2 ENSG00000145743.18::ENSG00000198961.10 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXL17 ENSG00000145743.18 protein_coding - - chr5:107859035-108382098:- chr5:108380699:- chr5:107194736-107717799:- chr5:107716400:- PJA2 ENSG00000198961.10 protein_coding - - chr5:109334713-109409974:- chr5:109383520:- chr5:108670414-108745675:- chr5:108719221:- chr5:108376053,chr5:108376058 chr5:109385562,chr5:109385564 NA NA chr5:107711754,chr5:107711759 chr5:108721263,chr5:108721265 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none F-box-like(23%)|Ring_finger_domain(100%) F-box(0%),F-box-like(0%)|zf-C3HC4(100%),zf-RING_2(100%),zf-RING_UBOX(100%) 2 4 0 71 279 ENST00000542267.7 ENST00000361189.7 upstream downstream duplicates(1),mismatches(1) CTCCCACCTCCGAAGGTGCCCCCACCGAAGCTGGCGGGGACGCTGTCCGAGCCGGGGGCACCGCCCCCTTGTCCGCCCAGCAGCAGCATGAATtTGGCGAC...GGACTGTCGGGgGTCCCCCGAAAACCCCTGCGACTGTCACAGGGAGCCGCCCCCCGAAACCCCAGACATCAACCAGCTGCCGCCGTCCATCCTGCTCAAG|GAATCTTCTGCGGCTTGTCCATAGTGTGAATAAAAACTAAATCACATCTATAATTCTACTGAACTGGTCACACAGACGCTGCCATATATGTCACAGTACACTGAAAAGGAGCCAGCAG...GGCTGTCTGGCCCAAACCAGCAGGAGGGTATCAGACAATTACAGGCAGGAGATATGGAAGAAGACATGCTTATGTCAGTTTTAAACCATGTATGACCAGACATGAAAGAAGCTTAGGTCGGG...CATTGAATCAAACCACTGAGAGCAGTCAATCCTTTGTTGCAGTACATCACAGTGAGGAAGGCAGGGATACCTTAGGAAGCAGTACAAATCTTCATAATCAC DCRgSPENPCDCHREPPPETPDINQLPPSILLK|essaacp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5784 L3MBTL4::ENSG00000226872 ENSG00000154655.16::ENSG00000226872.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1010 TRUE 375 L3MBTL4 ENSG00000154655.16 protein_coding - - chr18:5954706-6415237:- chr18:6093355:- chr18:5954705-6415236:- chr18:6093354:- ENSG00000226872 ENSG00000226872.2 lncRNA + + chr22:21031354-21044117:+ chr22:21042703:+ chr22:21385643-21398406:+ chr22:21396992:+ chr18:6027756,chr18:6027770 chr22:21034435,chr22:21034420 NA NA chr18:6027755,chr18:6027769 chr22:21388724,chr22:21388709 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Zinc_finger__C2HC_type(100%),mbt_repeat(100%)| MBT(100%),zf-C2HC(100%)| 1 1 2 62 17 ENST00000317931.12 ENST00000450652.2 upstream upstream mismappers(3) ATGACCTGAAGATCCTTCCAGGTCAAGCTGTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAG___TGCT...GCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGGCAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAAAAGGTGAACAGTCAGCCCAG|AGTCTCACTGTCACCCAGACTGGAGTGCAGTGGCATGAACTCGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAAGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCACAGAtTTTCACTTTtCTCGTCCAGGCTGGAGTGCAGTGGTGTCATCAACCCTTACTGCATCCTGTAACTCCTGGGCTCAAGAG...CCACTCCTCTGTGAAGCCCTTCCTGAGAcCCTGCAGCCACCTTTGGCATCACATGCTTCTCTCTCGCACACACTGGCTGCATGGCGGGTGTTCAAGCTGTC PYSDMNLKKEATLHDRLREQTQANLESDSSHSKSKSLCSLNFNGKHEKVNSQPr|vslsprlecsgmnsvhcnlcllgskdspasas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4317 chr18:6374361-6374425:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5785 L3MBTL4::ENSG00000226872 ENSG00000154655.16::ENSG00000226872.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1010 TRUE 375 L3MBTL4 ENSG00000154655.16 protein_coding - - chr18:5954706-6415237:- chr18:6080881:- chr18:5954705-6415236:- chr18:6080880:- ENSG00000226872 ENSG00000226872.2 lncRNA + + chr22:21031354-21044117:+ chr22:21042703:+ chr22:21385643-21398406:+ chr22:21396992:+ chr18:6027756,chr18:6027770 chr22:21034435,chr22:21034420 NA NA chr18:6027755,chr18:6027769 chr22:21388724,chr22:21388709 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Zinc_finger__C2HC_type(100%),mbt_repeat(100%)| MBT(100%),zf-C2HC(100%)| 0 1 2 45 17 ENST00000317931.12 ENST00000450652.2 upstream upstream mismappers(1) TGAAAATCAAAGGAAAAGAAGATATTGACTTGGATAATCTCTTCAGAG|AGTCTCACTGTCACCCAGACTGGAGTGCAGTGGCATGAACTCGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAgGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCACAGAtTTTCACTTTtCTCGTCCAGGCTGGAGTGCAGTGGTGTCATCAACCCTTACTGCATCCTGTAACTCCTGGGCTCAAGAG...CTATAGGCgGTAACTACCATGCCTGGCGTCAACCAGAATATTACGACAGCCTGCTGCTTCTAGTACTGAAGATCCAGGGGAGAGCTGGGCCCTGCACCTG KIKGKEDIDLDNLFR|eshchpdwsava* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4317 chr18:6374361-6374425:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5786 L3MBTL4::ENSG00000226872 ENSG00000154655.16::ENSG00000226872.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1010 TRUE 375 L3MBTL4 ENSG00000154655.16 protein_coding - - chr18:5954706-6415237:- chr18:6046728:- chr18:5954705-6415236:- chr18:6046727:- ENSG00000226872 ENSG00000226872.2 lncRNA + + chr22:21031354-21044117:+ chr22:21042703:+ chr22:21385643-21398406:+ chr22:21396992:+ chr18:6027756,chr18:6027770 chr22:21034435,chr22:21034420 NA NA chr18:6027755,chr18:6027769 chr22:21388724,chr22:21388709 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Zinc_finger__C2HC_type(100%),mbt_repeat(100%)| MBT(100%),zf-C2HC(100%)| 0 0 2 21 17 ENST00000400105.6 ENST00000450652.2 upstream upstream mismappers(3),mismatches(1) GTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGGAAGAACTCTGATAGCACCCCAAG___GTTATCCCAATCCAGAAAATTTTT...TACGATTGTAGATGTTGATGACCAAAGAGTAAAG___GTTCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACC...TCTcTAGTTTGAACTTCAATGGAAAACATGAAAAGGTGAACAGTCAGCCCAG___TGCTTGTGCTGCATCCCAGAGGTTTGG|AGTCTCACTGTCACCCAGACTGGAGTGCAGTGGCATGAACTCGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAAGGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCACAGAtTTTCACTTTtCTCGTCCAGGCTGGAGTGCAGTGGTGTCATCAACCCTTACTGCATCCTGTAACTCCTGGGCTCAAGAG sSLNFNGKHEKVNSQPsacaasqrfg|vslsprlecsgmnsvhcnlcllgskdspasas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4317 chr18:6374361-6374425:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5788 IMMP2L::ENSG00000226965 ENSG00000184903.10::ENSG00000226965.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:110886593:- chr7:110302700-111202573:- chr7:110526649:- ENSG00000226965 ENSG00000226965.2 lncRNA - - chr7:110108031-110534757:- chr7:110432906:- chr7:109748088-110174814:- chr7:110072963:- chr7:110699542,chr7:110699545 chr7:110480471,chr7:110480471 NA NA chr7:110339598,chr7:110339601 chr7:110120528,chr7:110120528 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Signal_peptidase__peptidase_S26_(88%)| I-set(100%),Ig_3(100%),LRRCT(100%),LRRNT(100%),LRR_5(100%),LRR_8(100%),Peptidase_S26(11%),fn3(100%),ig(100%)| 1 2 0 56 4 ENST00000405709.7 ENST00000435466.1 upstream downstream none CAAAAACCGGTATGTCAAAGTCCCCCGTGGTCACATCTGGGTTGAAGGTGATCATCATGGACACAGTTTTGACAGTAATTCTTTTGGGCCG|GAATTCCTGTGAGCATTCCTCTTCAAGATGGAAGAAAAAGGGAATATTTCACAACCCCAATGGTGAAACGTCTGCCTATAGCCAACAATACAATCT___TCTTG KNRYVKVPRGHIWVEGDHHGHSFDSNSFGP|efl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5792 LDHC::SERGEF ENSG00000166796.12::ENSG00000129158.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1011 TRUE 376 LDHC ENSG00000166796.12 protein_coding + + chr11:18412318-18452063:+ chr11:18415301:+ chr11:18433865-18473610:+ chr11:18436848:+ SERGEF ENSG00000129158.11 protein_coding - - chr11:17788048-18013047:- chr11:17788413:- chr11:17809595-18034594:- chr11:17809960:- chr11:18422252,chr11:18422250 chr11:17835510,chr11:17835512 NA NA chr11:18443799,chr11:18443797 chr11:17857057,chr11:17857059 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none lactate/malate_dehydrogenase__NAD_binding_domain(43%)|Regulator_of_chromosome_condensation_(RCC1)_repeat(17%) Ldh_1_N(11%)|RCC1(0%) 1 0 1 1 51 ENST00000541669.6 ENST00000265965.10 downstream downstream none GCTAATTGAGGATGATGAAAACTCCCAGTGTAAAATTACTATTGTTGGAACTGGTGCCGTAGGCATGGCTTGTGCTATTAGTATCTTACTGAAG___GATTTGGCTGATGAACTTGCCCTTGTTGATGTTGCATTGGACAAACTGAAGGGAGAAATGATGGATCTTCAGCATGGCAGTCTTTTCTTTAGTACTTCAAAGATTACTTCTGGAAAAG|GTGGAGTGTGTTACTCTTGGGGCTGGAATGAG...TCGTCAGGACTCCTTGTGGGCTGTGGGGCTGGCCACTCCTTGGCCCTCTGCCAGCTGCCAGCTCACCCTGCATTGGTCCAGGACCCCAAGGTCACCTACC LIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKGEMMDLQHGSLFFSTSKITSGK|gGVCYSWGWN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5793 LDHC::SERGEF ENSG00000166796.12::ENSG00000129158.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1011 TRUE 376 LDHC ENSG00000166796.12 protein_coding + + chr11:18412318-18452063:+ chr11:18412843:+ chr11:18433865-18473610:+ chr11:18434390:+ SERGEF ENSG00000129158.11 protein_coding - - chr11:17788048-18013047:- chr11:17788413:- chr11:17809595-18034594:- chr11:17809960:- chr11:18422252,chr11:18422250 chr11:17835510,chr11:17835512 NA NA chr11:18443799,chr11:18443797 chr11:17857057,chr11:17857059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none lactate/malate_dehydrogenase__NAD_binding_domain(15%)|Regulator_of_chromosome_condensation_(RCC1)_repeat(17%) Ldh_1_N(0%)|RCC1(0%) 1 0 0 6 51 ENST00000280704.8 ENST00000265965.10 downstream downstream duplicates(1) GTACTGATTGCGCCAAGCAAgGCATTT___GTTCTCCAAATGTCAACTGTCAAGGAGCAGCTAATTGAGAAGCTAATTGAGGATGATGAAAACTCCCAGTGTAAAATTACTATTGTTGGAACTGGTGCCGTAGGCATGGCTTGTGCTATTAGTATCTTACTGAAG|GTGGAGTGTGTTACTCTTGGGGCTGGAATGAGCATGGC MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLK|vecvtlgagmsm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5796 STAT3::CAVIN1 ENSG00000168610.16::ENSG00000177469.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 555 FALSE NA FALSE NA STAT3 ENSG00000168610.16 protein_coding - - chr17:42313324-42388540:- chr17:42388279:- chr17:40465342-40540558:- chr17:40540297:- CAVIN1 ENSG00000177469.13 protein_coding - - chr17:42402449-42423256:- chr17:42405388:- chr17:40554467-40575274:- chr17:40557406:- chr17:42376618 chr17:42414519 NA NA chr17:40528636 chr17:40566537 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |PTRF/SDPR_family(59%) |PTRF_SDPR(2%) 10 8 7 1330 2968 ENST00000678044.1 ENST00000357037.6 upstream downstream mismatches(6) CCGGGGGTTCCGACGTCGCAGCCGAGGGAACAAGCCCCAACCGGATCCTGGACAGGCACCCCGGCTTGGCGCTGTCTCTCCCCCTCGGCTCGGAGAGGCCCTTCGGCCTGAGGGAGCCTCGCCGCCCGTCCCCGGCACACGCGCAGCCCCGGCCTCTCGGCCTCTGCCGGAGAAACAG|GATGAAGTGAAGCTGCCGGCCAAACTGAGCATCAGCAAATCGCTGAAAGAGTCGGAGGCGCTGCCAGAGAAGGAGGGCGAGGAGCTGGGCGAGGGCGAGCGGCCCGAGGAGGACGCAGCGGCGCTGGAGCTTTCGTCGGACGAGGCGGTGGAGGTTGAGGAGGTTATTGAGGAGTCCCGCGCAGAGCGTATCAAGCGCAGCGGCCTGCGGCGCGTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 3 (acute-phase response factor) 1 Yes T-cell large granular lymphocytic leukaemia paediatric large granular lymphocytic leukaemia leukaemia_lymphoma oncogene missense,other FALSE NA NA NA NA NA NA NA NA NA 5798 ADAM9::DDHD2 ENSG00000168615.13::ENSG00000085788.14 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM9 ENSG00000168615.13 protein_coding + + chr8:38996754-39105445:+ chr8:38997160:+ chr8:38854273-38962964:+ chr8:38854679:+ DDHD2 ENSG00000085788.14 protein_coding + + chr8:38225218-38275558:+ chr8:38273370:+ chr8:38082736-38133076:+ chr8:38130888:+ chr8:39006205,chr8:39006206 chr8:38268377,chr8:38268375 NA NA chr8:38863724,chr8:38863725 chr8:38125895,chr8:38125893 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 5 2 6 1983 207 ENST00000678474.1 ENST00000529872.1 downstream upstream none CCGGCAGGGTTGGAAAATGATGGAAGAGGCGGAGGTGGAGGCGACCGAGTGCTGAGAGGAACCTGCGGAATCGGCCGAGATGGGGTCTGGCGCGCGCTTTCCCTCGGGGACCCTTCGTGTCCGGTGGTTGCTGTTGCTTGGCCTGGTGGGCCCAGTCCTCGGTGCGGCGCGGCCAG|CAGAGCTCTGTTACAGATATGAAAACAAAATGTGACACAATGAAGAAGCTGCATAAAAATACTGAAACCTAAG...CAAGCTGCAATGGCACTGAAGCACAATAAAAGGCAAGAAAAGACCAAGGGAATTTAACCCTCCACAAAAGAATCCCAAACCAACCAAATCAAACAAAAACC MGSGARFPSGTLRVRWLLLLGLVGPVLGAARP|aelcyryenkm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5837 ENSG00000255292::DLAT ENSG00000255292.9::ENSG00000150768.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255292 ENSG00000255292.9 protein_coding + + chr11:112086903-112193805:+ chr11:112089010:+ chr11:111957627-112064528:+ chr11:111959734:+ DLAT ENSG00000150768.17 protein_coding + + chr11:112025408-112064404:+ chr11:112062405:+ chr11:111896132-111935128:+ chr11:111933129:+ chr11:112159999,chr11:112159998 chr11:112061564,chr11:112061560 NA NA chr11:112030722,chr11:112030721 chr11:111932288,chr11:111932284 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(18%) CybS(1%)|2-oxoacid_dh(0%) 4 1 2 1277 315 ENST00000532699.1 ENST00000527231.2 downstream upstream duplicates(3) GTGCCGTTTGCGGTGCCCTAGGAGGCCGAG___CTCTGTTGCTTCGAACTCCAGTGGTCAGACCTGCTCATATCTCAGCATTTCTTCAGGACCGACCTATCCCAGAATGGTGTGGAGTGCAGCACATACACTTGTCAC...CTCCAAGGCTGCATCTCTCCACTGGACTAGCGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTTCCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCCCTGGCTGCAGCCCTCACTCTTCATGGTCACT|GGTTTGATGTGGCTAGCATGATGTCTGTTACACTCAGTTGTGATCACCGGGTGGTGGATGGAGCAGTTGGAGCCCAGTGGCTTGCTGAGTTTAGAAAGTAC...TTAAACAGGTGGTTCTTTTTATTTTAACCAGTTATTTTTATTATTGAGTCTGTCCAGATAAGTTATTTATAATGGGCATTACTGAATTTTTAAAATGCCGATTACACCCAAATATTGTGCACATTTAATAATCAGACACCAGATTTTTAGCTCTGTACTCCTAATTAAGGGACATGTATG SKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGH|wfdvasmmsvtlscdhrvvdgavgaqwlaefrk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5868 FOXP1::GADL1 ENSG00000114861.24::ENSG00000144644.15 NCIH747 SRR8615462 SRR8670700 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71015549:- chr3:71003844-71633129:- chr3:71064700:- GADL1 ENSG00000144644.15 protein_coding - + chr3:30726197-30894661:- chr3:30748414:+ chr3:30767689-30936153:- chr3:30789906:+ chr3:71004789,chr3:71004791 chr3:30736604,chr3:30736602 NA NA chr3:71053940,chr3:71053942 chr3:30778096,chr3:30778094 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none FOXP_coiled-coil_domain(34%)| FOXP-CC(0%)| 14 19 28 52 44 ENST00000318789.11 unknown upstream upstream duplicates(17),mismatches(1) GTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGCCTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAG___TTTGTCCCATGAGGAGCACCCCCATAGCCATCCTCTCTATGGACATGGTGTATGCAAGTGGCCAGGCTGTGAAGCAGTGTGCGAAGATTTCCAATCATTTCTAAA|CACTTCCCCACTGACTACAGTAAGGATGTAAGAAACACCCCCATAGAGTTGATACAATCAAGTTTCCTTCTGCCGGAATGTCAGCATCTGGAATGGCACCAAAGGATTTGAGAAGAATGATGCCAGGACACCAGATTTTCAAACAAGCATCTATCAGCCATGGTATTTTTCAGTTAAACAATATATGTGTAAGAGGCTTTAGC VSSSAPSKTSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCEDFQSFLn|tsplttvrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1284 chr3:71541970-71542089:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 5869 ENSG00000285708::GADL1 ENSG00000285708.1::ENSG00000144644.15 NCIH747 SRR8615462 SRR8670700 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71015549:- chr3:71008377-71803380:- chr3:71064700:- GADL1 ENSG00000144644.15 protein_coding - + chr3:30726197-30894661:- chr3:30748414:+ chr3:30767689-30936153:- chr3:30789906:+ chr3:71004789,chr3:71004791 chr3:30736604,chr3:30736602 NA NA chr3:71053940,chr3:71053942 chr3:30778096,chr3:30778094 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none FOXP_coiled-coil_domain(34%)| FOXP-CC(0%),IF4E(100%)| 14 19 28 52 44 ENST00000647725.1 unknown upstream upstream duplicates(17),mismatches(1) GTCTCCTCCTCTGCACCTTCCAAGACCTCCTTAATAATGAACCCACATGCCTCTACCAATGGACAGCTCTCAGTCCACACTCCCAAAAGGGAAAG___TTTGTCCCATGAGGAGCACCCCCATAGCCATCCTCTCTATGGACATGGTGTATGCAAGTGGCCAGGCTGTGAAGCAGTGTGCGAAGATTTCCAATCATTTCTAAA|CACTTCCCCACTGACTACAGTAAGGATGTAAGAAACACCCCCATAGAGTTGATACAATCAAGTTTCCTTCTGCCGGAATGTCAGCATCTGGAATGGCACCAAAGGATTTGAGAAGAATGATGCCAGGACACCAGATTTTCAAACAAGCATCTATCAGCCATGGTATTTTTCAGTTAAACAATATATGTGTAAGAGGCTTTAGC VSSSAPSKTSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCEDFQSFLn|tsplttvrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5892 ATG5::CRYBG1 ENSG00000057663.16::ENSG00000112297.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106201972:- chr6:106493298-106773666:- chr6:106649847:- CRYBG1 ENSG00000112297.18 protein_coding + - chr6:106360717-106572017:+ chr6:106465387:- chr6:106808592-107019892:+ chr6:106913262:- chr6:106196298,chr6:106196305,chr6:106196304 chr6:106480261,chr6:106480306,chr6:106480264 NA NA chr6:106644173,chr6:106644180,chr6:106644179 chr6:106928136,chr6:106928181,chr6:106928139 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Autophagy_protein_Apg5_(79%)| APG5(88%)| 46 27 55 564 75 ENST00000636437.1 unknown upstream downstream duplicates(44),mismatches(7),multimappers(2) ATTTGACCAGTTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGTTATATCCCCTTTAGAATATATCAG___ACAACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGATCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAG|ATACAAAAGCTGATGCCCAGAAAGGATGAATGACTTAACCTAAGACATCACAGGCCGTCTGGAGAAGAGCTGAAATCGCAACTCTGGTCTTTTGGCCATATTCAGTGCTTTATACTTCAGTTTTACAGTCTTCTATATGCCAGGCACTGTAATgGGTGTCAATAAGATGTTAGTTCCCCGCCCTGGAGAGGCAAAtGGTCACGTGGAGAAGAGATGTAATTTCCGAATAATAATATGGATAAATTATTTGAGATATTACAAAATTCCATGAGAACATGGG FDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDPE|dtkadaqkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5903 PIK3C2A::USH1C ENSG00000011405.14::ENSG00000006611.17 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 560 TRUE 1023 TRUE 377 PIK3C2A ENSG00000011405.14 protein_coding - - chr11:17077730-17207986:- chr11:17110432:- chr11:17099277-17229533:- chr11:17131979:- USH1C ENSG00000006611.17 protein_coding - - chr11:17493895-17544416:- chr11:17516290:- chr11:17515442-17565963:- chr11:17537837:- chr11:17105653,chr11:17105655 chr11:17517227,chr11:17517226 NA NA chr11:17127200,chr11:17127202 chr11:17538774,chr11:17538773 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PI3-kinase_family__ras-binding_domain(100%),Phosphatidylinositol_3-_and_4-kinase(23%),Phosphoinositide_3-kinase_C2(100%),Phosphoinositide_3-kinase_family__accessory_domain_(PIK_domain)(100%)|PDZ_domain(31%) PI3K_C2(100%),PI3K_rbd(100%),PI3Ka(100%),PI3_PI4_kinase(17%)|PDZ(22%) 10 5 6 224 40 ENST00000691414.1 ENST00000005226.12 upstream downstream duplicates(9),mismatches(1) CTCAAGCCAAGTCTAGTGGCAAAAGAATTAAATATTAAG___TCGTGTTCCTTCTTCAGTTCTAATGCTGTCCCCCTAAAAGTCACAATGGTGAATGCTGACCCTATGGGAGAAGAAATTAATGTCATGTTTAAG___GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAAGGACTAGATCTGAGGATGGTAATTTTCAAATGTCTCTCAACTGGCAGAGATCGAG|CTTTTGGATGGTTTTATCGTTACGATGGCAAATTCCCAACCATCCGGAAG___AAAGGAAAAGATAAGAAGAAAGCCAAGTATGGCAGCCTGCAGGACTTGAGAAAGAATAAGAAAGA LKPSLVAKELNIKSCSFFSSNAVPLKVTMVNADPMGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLKEGLDLRMVIFKCLSTGRDR|aFGWFYRYDGKFPTIRKKGKDKKKAKYGSLQDLRKNKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5904 PIK3C2A::USH1C ENSG00000011405.14::ENSG00000006611.17 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1023 TRUE 377 PIK3C2A ENSG00000011405.14 protein_coding - - chr11:17077730-17207986:- chr11:17110432:- chr11:17099277-17229533:- chr11:17131979:- USH1C ENSG00000006611.17 protein_coding - - chr11:17493895-17544416:- chr11:17512054:- chr11:17515442-17565963:- chr11:17533601:- chr11:17105653,chr11:17105655 chr11:17517227,chr11:17517226 NA NA chr11:17127200,chr11:17127202 chr11:17538774,chr11:17538773 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PI3-kinase_family__ras-binding_domain(100%),Phosphatidylinositol_3-_and_4-kinase(23%),Phosphoinositide_3-kinase_C2(100%),Phosphoinositide_3-kinase_family__accessory_domain_(PIK_domain)(100%)|PDZ_domain(31%) PI3K_C2(100%),PI3K_rbd(100%),PI3Ka(100%),PI3_PI4_kinase(17%)|PDZ(22%) 2 0 4 224 82 ENST00000691414.1 ENST00000005226.12 upstream downstream duplicates(5),mismappers(1) GCCAAGTCTAGTGGCAAAAGAATTAAATATTAAG___TCGTGTTCCTTCTTCAGTTCTAATGCTGTCCCCCTAAAAGTCACAATGGTGAATGCTGACCCTATGGGAGAAGAAATTAATGTCATGTTTAAG___GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAAGGACTAGATCTGAGGATGGTAATTTTCAAATGTCTCTCAACTGGCAGAGATCGAG|AAAGGAAAAGATAAGAAGAAAGCCAAGTATGGCAGCCTGCAGGACTTGAGAAAGAATAAGAAAGAACTGGAGTTTGAGCAAAAGCTTTACAAAGAGA PSLVAKELNIKSCSFFSSNAVPLKVTMVNADPMGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLKEGLDLRMVIFKCLSTGRDR|erkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5905 PIK3C2A::USH1C ENSG00000011405.14::ENSG00000006611.17 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1023 TRUE 377 PIK3C2A ENSG00000011405.14 protein_coding - - chr11:17077730-17207986:- chr11:17110432:- chr11:17099277-17229533:- chr11:17131979:- USH1C ENSG00000006611.17 protein_coding - - chr11:17493895-17544416:- chr11:17501980:- chr11:17515442-17565963:- chr11:17523527:- chr11:17105653,chr11:17105655 chr11:17517227,chr11:17517226 NA NA chr11:17127200,chr11:17127202 chr11:17538774,chr11:17538773 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PI3-kinase_family__ras-binding_domain(100%),Phosphatidylinositol_3-_and_4-kinase(23%),Phosphoinositide_3-kinase_C2(100%),Phosphoinositide_3-kinase_family__accessory_domain_(PIK_domain)(100%)|PDZ_domain(31%) PI3K_C2(100%),PI3K_rbd(100%),PI3Ka(100%),PI3_PI4_kinase(17%)|PDZ(22%) 0 1 2 224 87 ENST00000691414.1 ENST00000005226.12 upstream downstream none GTCGTGTTCCTTCTTCAGTTCTAATGCTGTCCCCCTAAAAGTCACAATGGTGAATGCTGACCCTATGGGgGAAGAAATTAATGTCATGTTTAAG___GTTGGTG...GGATGGTAATTTTCAAATGTCTCTCAACTGGCAGAGATCGAG|GATTTCCGGAAATATGAGGAAGGCTTTGACCCCTACTCTATG___TTCACCCCAGAGCAGATCATGGGGAAGGATGTCCGGCTCCTACGCATCAAGAAG___GAGGGATCCTTAGACCTGGCCCTGGAAGGCGG MVIFKCLSTGRDR|gfpei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5906 ADAM10::MINDY2 ENSG00000137845.15::ENSG00000128923.11 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM10 ENSG00000137845.15 protein_coding - - chr15:58588809-58749791:- chr15:58665097:- chr15:58881008-59041990:- chr15:58957296:- MINDY2 ENSG00000128923.11 protein_coding + - chr15:58771192-58861900:+ chr15:58778469:- chr15:59063391-59154099:+ chr15:59070668:- chr15:58654072 chr15:58788642 NA NA chr15:58946271 chr15:59080841 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Reprolysin_family_propeptide(100%)| Pep_M12B_propep(100%),Reprolysin_2(69%),Reprolysin_3(69%),Reprolysin_5(69%)| 10 4 2 756 14 ENST00000260408.8 unknown upstream downstream duplicates(4),low_entropy(1),mismatches(1) CTCATATTTACACTGGACATATTTATG___GTGAAGAAGGAAGTTTTAGCCATGGGTCTGTTATTGATGGAAGATTTGAAGGATTCATCCAGACTCGTGGTGGCACATTTTATGTTGAGCCAGCAGAGAGATATATTAAAGACCGAACTCTGCCATTTCACTCTGTCATTTATCATGAAGATGATATTA___ACTATCCCCATAAATACGGTCCTCAGGGGGGCTGTGCAGATCATTCAGTATTTGAAAGAATGAGGAAATACCAGATGACTGGTGTAGAGGAAGTAACACAG|TTTCTAGGTTTGATGTTTGGAGAAACCAACTTTATATAAAAAAAATCCTGCTTCAGGACCCTGGCATTCCTCCCATGACTTGGAACAGGAGATAATCTCAGCTTATACTAAGCAAAGAAAAAAATTGGGAAAAGAATTCCCTACCAAAAAGAGTTAAGA HIYTGHIYGEEGSFSHGSVIDGRFEGFIQTRGGTFYVEPAERYIKDRTLPFHSVIYHEDDINYPHKYGPQGGCADHSVFERMRKYQMTGVEEVTQ|flglmfgetnfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5908 JMJD1C::ENSG00000243349 ENSG00000171988.20::ENSG00000243349.2 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1024 TRUE 378 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63380318:- chr10:64926981-65281610:- chr10:65140078:- ENSG00000243349 ENSG00000243349.2 lncRNA + + chr10:45147394-45171389:+ chr10:45156778:+ chr10:45642842-45666837:+ chr10:45652226:+ chr10:63365517,chr10:63365565 chr10:45150216,chr10:45150238 NA NA chr10:65125277,chr10:65125325 chr10:45645664,chr10:45645686 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none none none 5 6 3 104 29 ENST00000633035.1 ENST00000427229.2 upstream upstream duplicates(2),mismatches(1) CTCGGCCGTCGCAGGGAGCTCCGCAGCGACGTGGACCAAG___GTGTATGTGGAATTTGATGATCTTGAATGGGATAAACGAGAGTGGGTTAAAGTTTATGAAGATTTTTCAACTTTCTTGGTGGAATACCACTTAATCTGGGCCAAAAGGAATGACCCTAGCCAGACTCAGGGATCAAAGAGCAAACAGATTCAGTGGCCTGCATTG|AAGGAACATCTGAAGGAACACCTGATGAGGCTGCACCCTTGGCGGAAAGAACACCTGACATGGCTGAAAGCTTGGTGGAAAAACCACCTGATGAGGCTGCACCCTTGGTGGAGGGAACAGCTGACAAAATTCAATGTTTGGGGAAAGCAACATCTGGAAAGTTTGAACAGTCAGCAGAAGAAACACCTAAGAAAATTATGAGGACTGCAAAAGAAACATCTgAGAAATTTGCATGGCCAGCAAAAGAAAGACCTAGGAAGATCACATGGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3156-1 chr10:45164014-45164088:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5909 JMJD1C::ENSG00000243349 ENSG00000171988.20::ENSG00000243349.2 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1024 TRUE 378 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63380318:- chr10:64926981-65281610:- chr10:65140078:- ENSG00000243349 ENSG00000243349.2 lncRNA + + chr10:45147394-45171389:+ chr10:45151584:+ chr10:45642842-45666837:+ chr10:45647032:+ chr10:63365517,chr10:63365565 chr10:45150216,chr10:45150238 NA NA chr10:65125277,chr10:65125325 chr10:45645664,chr10:45645686 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none none none 0 1 3 104 3 ENST00000633035.1 ENST00000427229.2 upstream upstream none CTCGGCCGTCGCAGGGAGCTCCGCAGCGACGTGGACCAAG___GTGTATGTGGAATTTGATGATCTTGAATGGGATAAACGAGAGTGGGTTAAAGTTTATGAAGATTTTTCAACTTTCTTGGTGGAATACCA...CAAACAGATTCAGTGGCCTGCATTG|GTGCACCGGGTACTTCTTGAGCATTGGGATGATCTGCTTCACCTCCAGTCACACAGCTTCCAGGCACTGGGAGTGGTCCTCCTGCAGGATGTTCAGCTTCGACTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3156-1 chr10:45164014-45164088:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5910 JMJD1C::ENSG00000243349 ENSG00000171988.20::ENSG00000243349.2 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1024 TRUE 378 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63380318:- chr10:64926981-65281610:- chr10:65140078:- ENSG00000243349 ENSG00000243349.2 lncRNA + + chr10:45147394-45171389:+ chr10:45152838:+ chr10:45642842-45666837:+ chr10:45648286:+ chr10:63365517,chr10:63365565 chr10:45150216,chr10:45150238 NA NA chr10:65125277,chr10:65125325 chr10:45645664,chr10:45645686 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none none none 1 0 3 104 18 ENST00000633035.1 ENST00000427229.2 upstream upstream duplicates(1),mismatches(1) CTCGGCCGTCGCAGGGAGCTCCGCAGCGACGTGGACCAAG___GTGTATGTGGAATTTGATGATCTTGAATGGGATAAACGAGAGTGGGTTAAAGTTTATGAAGATTTTTCAACTTTCTTGGTGGAATACCACTTAATCTGGGCCAAAAGGAATGACCCTAGCCAGACTCAGGGATCAAAGAGCAAACAGATTCAGTGGCCTGCATTG|AGAAATGGAATGGTTGCATCACTTATCTAtGTAAACAATTGAAGAAcTGTCTGAAAGAAAATATG___GAAGTGACCTCACAATGAaCCAAGCTCCTGTTTGTTGATTGTGATGAAATGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3156-1 chr10:45164014-45164088:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5911 JMJD1C::ENSG00000243349 ENSG00000171988.20::ENSG00000243349.2 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1024 TRUE 378 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63380318:- chr10:64926981-65281610:- chr10:65140078:- ENSG00000243349 ENSG00000243349.2 lncRNA + + chr10:45147394-45171389:+ chr10:45162112:+ chr10:45642842-45666837:+ chr10:45657560:+ chr10:63365517,chr10:63365565 chr10:45150216,chr10:45150238 NA NA chr10:65125277,chr10:65125325 chr10:45645664,chr10:45645686 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 0 0 104 43 ENST00000399262.7 ENST00000427229.2 upstream upstream mismappers(1) AGCAAACAGATTCAGTGGCCTGCATTG|TGGATGTGAGTTCTGTAGAGTCTATATTCAG___AGTCTCACCCTGTCACCCAGGCTGGAATGCAATGGCACGATCT...GCCTCAGCCTCCCGAGTATCTGGGAGTACAGGCATGCGCCTCCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGAGTTTCACCATGTTGCCCAGGC SKQIQWPAL|wm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3156-1 chr10:45164014-45164088:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5913 SLC16A3::ZBED5 ENSG00000141526.18::ENSG00000236287.8 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 561 TRUE 1025 TRUE 379 SLC16A3 ENSG00000141526.18 protein_coding + + chr17:82217934-82261129:+ chr17:82228529:+ chr17:80175810-80219005:+ chr17:80186405:+ ZBED5 ENSG00000236287.8 protein_coding - - chr11:10812074-10858796:- chr11:10856257:- chr11:10833621-10880343:- chr11:10877804:- chr17:82228964,chr17:82228965 chr11:10857542,chr11:10857541 NA NA chr17:80186840,chr17:80186841 chr11:10879089,chr11:10879088 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |BED_zinc_finger(100%) none 1 8 1 90 45 ENST00000584689.6 ENST00000413761.7 downstream downstream duplicates(1) CCCACATCCAGGCAGCGCAGGCCGCGGGCCGCTCCCCTAGCCAGGAAGAGCCGCCGTCCGCACCGGGACCGGAGAGGAAGCGGAG|GCTTTTGGTTACTCCCCTTCCCACCCCATCCCTTAATTTTATTCTTTTGAAGAGTGCATTTCAAGCTGCCAAGGTGGAGAGAGGGATTACAGAAAGGAGAACACCTTATTTCAG___AAAAGGTGTACCATACCTGAGAGCACCAGGAAGTCGCATGAGAGATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5914 SLC16A3::ZBED5 ENSG00000141526.18::ENSG00000236287.8 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1025 TRUE 379 SLC16A3 ENSG00000141526.18 protein_coding + + chr17:82217934-82261129:+ chr17:82218184:+ chr17:80175810-80219005:+ chr17:80176060:+ ZBED5 ENSG00000236287.8 protein_coding - - chr11:10812074-10858796:- chr11:10856257:- chr11:10833621-10880343:- chr11:10877804:- chr17:82228964,chr17:82228965 chr11:10857542,chr11:10857541 NA NA chr17:80186840,chr17:80186841 chr11:10879089,chr11:10879088 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |BED_zinc_finger(100%) none 3 1 1 48 45 ENST00000580098.6 ENST00000413761.7 downstream downstream duplicates(2),mismatches(1) GATCCTGCCACACAGCCCGGCCCCACTCCCCAGGCCCCCGGCCCCATAGGCCTCTAGCCACAGCCTGGCTGCTGTCCTCATGTCCTTGGCTCTGGCCTGGTGAAGGCCAAGGGCACTTCAGAACCTCCCTGTGCtTCCATGTGCCAGGTTGGGGCTGGGCACGAGGCCACAG...GGCTGGCAGGTGGTGACCTCTGCTCCTCGACCTGGGATGCTCCAGGTTGAGACGTAGGGTAGCTGCAGTCCCAGCAATGACAAGCTCTGGGTAACCCTG|GCTTTTGGTTACTCCCCTTCCCACCCCATCCCTTAATTTTATTCTTTTGAAGAGTGCATTTCAAGCTGCCAAGGTGGAGAGAGGGATTACAGAAAGGAGAACACCTTATTTCAG___AAAAGGTGTACCATACCTGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5915 SLC16A3::ZBED5 ENSG00000141526.18::ENSG00000236287.8 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1025 TRUE 379 SLC16A3 ENSG00000141526.18 protein_coding + + chr17:82217934-82261129:+ chr17:82228545:+ chr17:80175810-80219005:+ chr17:80186421:+ ZBED5 ENSG00000236287.8 protein_coding - - chr11:10812074-10858796:- chr11:10856257:- chr11:10833621-10880343:- chr11:10877804:- chr17:82228964,chr17:82228965 chr11:10857542,chr11:10857541 NA NA chr17:80186840,chr17:80186841 chr11:10879089,chr11:10879088 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |BED_zinc_finger(100%) none 1 2 1 22 45 ENST00000392341.6 ENST00000432999.6 downstream downstream none CGCAGGCCGCGGGCCGCTCCCCTAGCCAGGAAGAGCCGCCGTCCGCACCGGGACCGGAGAGGAAGCGGAGGTCTGAAGGGGGACAG|GCTTTTGGTTACTCCCCTTCCCACCCCATCCCTTAATTTTATTCTTTTGAAGAGTGCATTTCAAGCTGCCAAGGTGGAGAGAGGGATTACAGAAAGGAGAACACCTTATTTCAG___CTTTTATTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5916 CERCAM::CHST11 ENSG00000167123.20::ENSG00000171310.11 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CERCAM ENSG00000167123.20 protein_coding + + chr9:128411751-128437351:+ chr9:128424614:+ chr9:131174030-131199630:+ chr9:131186893:+ CHST11 ENSG00000171310.11 protein_coding + + chr12:104455295-104762014:+ chr12:104719381:+ chr12:104849073-105155792:+ chr12:105113159:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Glycosyl_transferase_family_2(100%)|Sulfotransferase_family(100%) Glyco_tranf_2_4(100%)|Sulfotransfer_2(100%) 2 2 3 535 6 ENST00000372842.5 unknown downstream upstream duplicates(3),inconsistently_clipped(1) CCAAGAACCGCCAGCGCCGGGGCTGCTTCCGTGTCCCCATGGTCCACTCCACCTTCCTTGCATCCCTGCGGGCTGAAGGGGCAGACCAGCTTGCTTTCTACCCGCCACATCCCAACTACACTTGGCCTTTCGACGACATCATCGTCTTCGCCTATGCCTGCCAGGCTGCTG|GTGACCACCTGAGATCCGAAGTTCTGGAAGTCAACACACCATCCACCCACGCTCCCCTTGCCCACTTCACTCTGTCTCTCTCGTGCACAGGTGCACGCACACAGGGCTCAGGCTGCAGTCCGACAGAAACATAGGCTTCCTGCCATTAATTGGAGGGCCCTGACTGCAGACACAGCATAACTATCTATTaATAGTCTTTTTTTAATTCTAAG KNRQRRGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAA|gdhlrsevlevntpsthaplahftlslsctgartqgsgcsptet* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE carbohydrate sulfotransferase 11 2 B-CLL leukaemia_lymphoma oncogene, fusion translocation 5917 NIBAN2::ENG ENSG00000136830.12::ENSG00000106991.14 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NIBAN2 ENSG00000136830.12 protein_coding - - chr9:127505339-127578989:- chr9:127578922:- chr9:130267618-130341268:- chr9:130341201:- ENG ENSG00000106991.14 protein_coding - - chr9:127815013-127854658:- chr9:127826672:- chr9:130577292-130616937:- chr9:130588951:- chr9:127572585,chr9:127572592 chr9:127828368,chr9:127828372 NA NA chr9:130334864,chr9:130334871 chr9:130590647,chr9:130590651 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Zona_pellucida-like_domain(100%) |Zona_pellucida(100%) 2 3 1 57 230 ENST00000373314.7 ENST00000373203.9 upstream downstream duplicates(2),low_entropy(1),mismatches(1) CAGCAGCAAACAGCTCTCAAGGACGTGCTAGGAGTCAGGAACTGGGCCAGcTCCGGTCCCTTCCTTTTGGGGCTCTCACTCTGGAGGATGGGGTGGATGGGAG|AATTCCAGCCTGGTCACCTTCCAAGAGCCCCCGGGGGTCAACACCACAGAGCTGCCATCCTTCCCCAAGACCCAGATCCTTGAGTGGGCAGCTGAGAGGGGCCCCATCACCTCTGCTGCTGAGCTGAATGACCCCCAGAGCATCCTCCTCCGACTGGGCCAAG___CCCAGGGGTCAC MGWMG|efqpghlprapggqhhraailpqdpdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5919 PHKA1::ENSG00000284391 ENSG00000067177.15::ENSG00000284391.1 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHKA1 ENSG00000067177.15 protein_coding - - chrX:72578814-72714319:- chrX:72705198:- chrX:71798664-71934167:- chrX:71925047:- ENSG00000284391 ENSG00000284391.1 lncRNA - - chrX:70427450-70435350:- chrX:70427912:- chrX:69647300-69655200:- chrX:69647762:- chrX:72699366,chrX:72699370 chrX:70432940,chrX:70432941 NA NA chrX:71919216,chrX:71919220 chrX:69652790,chrX:69652791 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Glycosyl_hydrolases_family_15(9%)| Glyco_hydro_15(7%)| 1 1 3 152 21 ENST00000373545.7 ENST00000638795.1 upstream downstream duplicates(1),mismatches(1) GTTTGGGCCTGGCCTATCGGAAGAATGCAGACCGGGATGAGGATAAGGCAAAGGCCTATGAATTGGAGCAG___AGTGTAGTGAAGCTGATGAGAGGACTACTGCACTGCATGATCAGACAG|GATTGAAGTTGACACTTCTGGGCCAGGCATTCGGAGCTCTTCAAGGCCAAGCCTCTGCTCCCTACCACTCCCATGAATTGTCTCTCTCAGTTACATTCAGCCACATTTTATTCCTGGAAACACCCTTTTTCAGACTTCTGGGCTTTACGTGTCCTCTTCCCTCTGAAGGAGTTCCTGTTCCCTGCTTTGTGCATCTTAG LGLAYRKNADRDEDKAKAYELEQSVVKLMRGLLHCMIRQ|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5920 CEP128::KIF26B ENSG00000100629.17::ENSG00000162849.16 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80743075:- chr14:80943326-81425861:- chr14:81209419:- KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245646121:+ chr1:245318287-245872734:+ chr1:245809423:+ chr14:80603061 chr1:245611533 NA NA chr14:81069405 chr1:245774835 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Kinesin_motor_domain(32%) |Kinesin(46%) 2 1 2 64 11 ENST00000555265.6 ENST00000407071.7 upstream upstream duplicates(2) CAAAAAACTGAAGCTAAAATATCAATGTTTGAAGGATCAACTAGAAGAAAGG___GAAAAACATATAAGCATTGAAGAGGAGCACTTAAGGAGGATGGAAGAGG...ATTAGATTGTGCCCACCCAGATTAAGG___ACTAAACTTCAGTGGCTCTGTGAGGAACTGAAAGAGAGAGAAAACAGAGAGAAAAATCTGCGACACCAGCTGATGCTCTGCAGACAACAACTCAGGAATTTGACTGAAAACAAGGAATCTGAGTTGCAGTGTCTCTTTCAACAGATAGAAAGGCAGGAGCAGCTTCTGGATGAAATACATCGTGAGAAGAGAG|TGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGTCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACAC irlcpprlrTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKR|vSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5921 XPNPEP3::ENSG00000289120 ENSG00000196236.13::ENSG00000289120.2 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XPNPEP3 ENSG00000196236.13 protein_coding + + chr22:40857077-40932815:+ chr22:40886515:+ chr22:41253081-41328819:+ chr22:41282519:+ ENSG00000289120 ENSG00000289120.2 lncRNA - - chr22:22790853-22818916:- chr22:22791361:- chr22:23133342-23161413:- chr22:23133850:- chr22:40895871,chr22:40895862 chr22:22812403,chr22:22812408 NA NA chr22:41291875,chr22:41291866 chr22:23154900,chr22:23154905 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Aminopeptidase_P__N-terminal_domain(100%),Metallopeptidase_family_M24(5%)| AMP_N(100%),DnaJ(100%),Peptidase_M24(0%)| 1 1 2 112 7 ENST00000357137.9 ENST00000686504.1 downstream downstream duplicates(3) GTATGACTGGATGAGGCCCTCACATGCACAGCTTCACTCTGACTATATGCAGCCCCTGACTGAGGCCAAAGCCAAGAGCAAGAACAAGGTTCGGGGTGTTCAGCAGCTGATACAGCGCCTCCGGCTGATCAAGTCTCCTGCAGAAATTGAACGAATGCAGATTGCTGGGAAGCTGACATCACAG|ATTCATCTCTGAAACCATGACAGGTGAATGGAGCAGCTATTTGAGCACCAGGAAAGGAAATGGTACACAGCAGTTTGGGATGGCtCCAGC YDWMRPSHAQLHSDYMQPLTEAKAKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQ|ihl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5923 TBC1D19::CLNK ENSG00000109680.11::ENSG00000109684.16 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1026 TRUE 380 TBC1D19 ENSG00000109680.11 protein_coding + + chr4:26576437-26756223:+ chr4:26638834:+ chr4:26578059-26757845:+ chr4:26640456:+ CLNK ENSG00000109684.16 protein_coding - - chr4:10486395-10684768:- chr4:10635901:- chr4:10488019-10686392:- chr4:10637525:- chr4:26639749,chr4:26639746 chr4:10644771,chr4:10644774 NA NA chr4:26641371,chr4:26641368 chr4:10646395,chr4:10646398 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |SH2_domain(100%) |SH2(100%) 0 1 2 18 4 ENST00000264866.9 ENST00000507719.1 downstream downstream duplicates(2) AAAAGAATTTTGAAGAGTTTAAATAGTATGTGCACTGAACTGAGTATCCCACTGGCACGAAAG___...CTTTTCTGAGACTGCTGGATGGGG___AGGCCAGTTGGAGAACAGAAAGAACTTCTTAATAAATGGAATGAAATGGGAACTGATGAACCAG|CATTCTTCACGATGCCTGATGCTGTGCAGAAGAGCGTAGTCTAGAAGAAAGAACACGGATTTTGGAGACAGGCATTCCTCTCAACCCCAAACCTGCCATCTCCTA...AGGTCCCTCTGTCGCTCTCTTCCATTTTTTTGCTGATACTCTGCAGTATCAGCTTTATTTTCAGACAGTCGCTTTCCACATCCAGCACAGATGGTGGAGAG lf*dcwmgRPVGEQKELLNKWNEMGTDEP|afftmpdavqksvv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5924 TBC1D19::CLNK ENSG00000109680.11::ENSG00000109684.16 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1026 TRUE 380 TBC1D19 ENSG00000109680.11 protein_coding + + chr4:26576437-26756223:+ chr4:26638834:+ chr4:26578059-26757845:+ chr4:26640456:+ CLNK ENSG00000109684.16 protein_coding - - chr4:10486395-10684768:- chr4:10635904:- chr4:10488019-10686392:- chr4:10637528:- chr4:26639749,chr4:26639746 chr4:10644771,chr4:10644774 NA NA chr4:26641371,chr4:26641368 chr4:10646395,chr4:10646398 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none |SH2_domain(100%) |SH2(100%) 1 0 2 18 4 ENST00000264866.9 ENST00000507719.1 downstream downstream duplicates(1) CTTTGGTATACATGAGGAAAGCACAG___GGAAGTTGGaAAAAAAGAATTTTGAAGAGTTTAAATAGTATGTGCACTGAACTGAGTATCCCACTGGCACGAAAG___AGGCCAGTTGGAGAACAGAAAGAACTTCTTAATAAATGGAATGAAATGGGAACTGATGAACCAG|CAGCATTCTTCACGATGCCTGATGCTGTGCAGAAGAGCGTAGTCTAGAAGAAAGAACACGGATTTTGGAGACAGGCATTCCTCTCAACCCCAAACCTGCCATCTCCTA LVYMRKAQGSWkKRILKSLNSMCTELSIPLARKRPVGEQKELLNKWNEMGTDEP|aafftmpdavqksvv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5925 AFMID::TNRC6C ENSG00000183077.16::ENSG00000078687.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AFMID ENSG00000183077.16 protein_coding + + chr17:78187358-78207702:+ chr17:78202751:+ chr17:76183439-76203783:+ chr17:76198832:+ TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:78091440:+ chr17:75954785-76104903:+ chr17:76087521:+ chr17:78203351,chr17:78203030,chr17:78203031 chr17:78089259,chr17:78089231,chr17:78089229 NA NA chr17:76199432,chr17:76199111,chr17:76199112 chr17:76085340,chr17:76085312,chr17:76085310 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none alpha/beta_hydrolase_fold(6%)|TNRC6-PABC_binding_domain(96%) Abhydrolase_3(1%)|TNRC6-PABC_bdg(71%) 1 2 0 109 42 ENST00000409257.10 ENST00000696270.1 downstream upstream duplicates(3),mismatches(1) GCCTGCTGCATGTCCCCTATGGAaACGGCGAAGGGGAGAAAGTGGACATTTACTTCCCCGACGAGTCGTCTGAAG___CCTTGCCTTTCTTCCTGTTCTTTCACGGAGGATACTGGCAGAGCGGAAG|CTGGACTGAACCCAAACATGAATGTCAACAGCATGGACATGACCGGTGGCTTGTCGGTGAAGGACCCA...CTTGCCCAGTGCCGCTTCCCCCCTGGAGCAGAACCCTAGCAAGCATG___GTGCTATCCCTGGAGGTCTAAGCATTGGGCCTCCAGGTAAGTCCTCCATTGATGACTC...ATTGACCCTGAGAATGACCCTGACGTCACTCCTGGCAGTGTCCCCACTGGGCCTACCATCAACACCACCATCCAGGATGTCAACCGCTACCTCCTCAAGAG LLHVPYGnGEGEKVDIYFPDESSEALPFFLFFHGGYWQSGs|wtepkhecqqhghdrwlvgegp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 76187141 FALSE 76060803 FALSE YES In-frame TRUE Lung LUNG no_match 78191060 FALSE 78064722 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5928 RANBP10::ACD ENSG00000141084.12::ENSG00000102977.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1027 FALSE NA RANBP10 ENSG00000141084.12 protein_coding - - chr16:67723070-67806560:- chr16:67806302:- chr16:67756973-67840463:- chr16:67840205:- ACD ENSG00000102977.18 protein_coding - - chr16:67657512-67660810:- chr16:67658362:- chr16:67691415-67694713:- chr16:67692265:- chr16:67805851,chr16:67805854 chr16:67658866,chr16:67658866 NA NA chr16:67839754,chr16:67839757 chr16:67692769,chr16:67692769 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none none none 0 1 2 47 183 ENST00000317506.8 ENST00000219251.13 upstream downstream duplicates(1) GGGGGCGCTGGGGGCGGGCTGCCGTCCCCTGGGGAGCAGGAGCTGAGCCGGCGCTTGCAGCGCCTGTATCCCGCGGTCAACCAGCAAGAGACTCCGCTGCCGCGCTCCTGGAGCCCCAAGGACAAATACAACTACATTGGTCTCTCCCAGGGCAACCTCCGCGTCCACTACAAAG|GAACCCCGGCCTTACCCGGCCACATGTCATCCGAGGAAAGTGGTACCAGCATCAGCCTTCTGCCTGCCCTGTCCTTGGCTGCTCCAGACCCAGGGCAGAGAAGCAGCTCCCAGCCCTCACCAGCCATCTGCTCAGCCCCTGCCACCCTGACCCCCAG GGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPKDKYNYIGLSQGNLRVHYK|gTPALPGHMSSEESGTSISLLPALSLAAPDPGQRSSSQPSPAICSAPATLTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5929 ICE2::ANXA2 ENSG00000128915.12::ENSG00000182718.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1028 TRUE 381 ICE2 ENSG00000128915.12 protein_coding - - chr15:60419609-60479160:- chr15:60476063:- chr15:60711808-60771359:- chr15:60768262:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60386086:- chr15:60639333-60695082:- chr15:60678285:- chr15:60470366,chr15:60470370 chr15:60391787,chr15:60391788 NA NA chr15:60762565,chr15:60762569 chr15:60683986,chr15:60683987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Annexin(100%) |Annexin(100%) 6 5 4 104 16348 ENST00000558181.5 ENST00000559780.6 upstream downstream duplicates(12),low_entropy(1),mismappers(1),mismatches(1) CTTGGAGCCTTCGCAGCCAGGCAGCTGTGAACTGTGAGCTAGAGTGAAGCAGAAATCTAGGAAGATGAGCTCCAAGATGGTCATAAGTGAACCAGGACTGAATTG___GGATATTTCCCCCAAAAATGGCCTTAAGACATTTTTCTCTCGAGAAAATTATAAAGATCATTCCATGGCTCCAAGTTTAAAAGAACTACGTGTTTTATCCAACAG|CTTCCTTCAAAATGTCTACTGTTCACGAAATCCTGTGCAAGCTCAGCTTGGAGGGTGAT___CACTCTACACCCCCAAGTGCATATGGGTCTGTCAAAGCCTATACTAACTTTGATGCTGAGCGGGATGCTTTGAACATTGAAACA MSSKMVISEPGLNWDISPKNGLKTFFSRENYKDHSMAPSLKELRVLSNs|flqnvycsrnpvqaqlgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5930 ICE2::ANXA2 ENSG00000128915.12::ENSG00000182718.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1028 TRUE 381 ICE2 ENSG00000128915.12 protein_coding - - chr15:60419609-60479160:- chr15:60476063:- chr15:60711808-60771359:- chr15:60768262:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60390317:- chr15:60639333-60695082:- chr15:60682516:- chr15:60470366,chr15:60470370 chr15:60391787,chr15:60391788 NA NA chr15:60762565,chr15:60762569 chr15:60683986,chr15:60683987 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Annexin(100%) |Annexin(100%) 1 0 5 104 69 ENST00000558181.5 ENST00000396024.7 upstream downstream duplicates(3),mismappers(1) CTAGAGTGAAGCAGAAATCTAGGAAGATGAGCTCCAAGATGGTCATAAGTGAACCAGGACTGAATTG___GGATATTTCCCCCAAAAATGGCCTTAAGACATTTTTCTCTCGAGAAAATTATAAAGATCATTCCATGGCTCCAAGTTTAAAAGAACTACGTGTTTTATCCAACAG|GGTGAAAATGTTTGCCATTAAACTCACATGAAGTAGGAAATATTTATATGGATACAAAAGGCACCTGCAT MSSKMVISEPGLNWDISPKNGLKTFFSRENYKDHSMAPSLKELRVLSNr|vkmfaiklt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5931 ICE2::ANXA2 ENSG00000128915.12::ENSG00000182718.18 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1028 TRUE 381 ICE2 ENSG00000128915.12 protein_coding - - chr15:60419609-60479160:- chr15:60479003:- chr15:60711808-60771359:- chr15:60771202:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60386086:- chr15:60639333-60695082:- chr15:60678285:- chr15:60470366,chr15:60470370 chr15:60391787,chr15:60391788 NA NA chr15:60762565,chr15:60762569 chr15:60683986,chr15:60683987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Annexin(100%) |Annexin(100%) 0 3 0 138 16348 ENST00000561446.5 ENST00000559780.6 upstream downstream duplicates(2),low_entropy(1),mismatches(1) CTTTcTTGGGCGCGCGCGACAATGTGAGGAGTGGGGTGGAGCGTGTGTGGTGTGTGGCTGCGGCCTGGGCAAGAGCCGCCGCGGACCATGAG|CTTCCTTCAAAATGTCTACTGTTCACGAAATCCTGTGCAAGCTCAGCTTGGAGGGTGAT___CACTCTACACCCCCAAGTGCATATGGGTCTGTCAAAGCCTATACTAACTTTGATGCTGAGCGGGATGCTTTGAACATTGAAACAGCCATCAAGACCAAAG___GTGTGGATGAGGTCACCATTGTCAACATTTTGACCAACCGCAGCAATGCACAG Ms|flqnvycsrnpvqaqlgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5938 SEH1L::PTPN2 ENSG00000085415.16::ENSG00000175354.20 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEH1L ENSG00000085415.16 protein_coding + + chr18:12947133-12987536:+ chr18:12963371:+ chr18:12947132-12987535:+ chr18:12963370:+ PTPN2 ENSG00000175354.20 protein_coding - + chr18:12785478-12929643:- chr18:12881054:+ chr18:12785477-12929642:- chr18:12881053:+ chr18:12969547,chr18:12969545 chr18:12879345,chr18:12879340 NA NA chr18:12969546,chr18:12969544 chr18:12879344,chr18:12879339 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none WD_domain__G-beta_repeat(46%)| WD40(99%)| 4 1 5 1517 20 ENST00000262124.15 unknown downstream upstream duplicates(5) GGAGAATCAAATGATAAACTGCGAGGACAGAGCCACTGG___GTTAAAAGGACAACTCTGGTGGATAGCAGAACATCTGTTACTGATGTGAAGTTTGCTCCCAAGC...ATGGGTCTTATGTTAGCAACCTGTTCCGCAGATGGTATAGTAAGAATCTATGAGGCACCAGATGTTATGAATCTCAGCCAGTGGTCTTTGCAGCATGAGATCTCATGTAAGCTAAGCTGTAGTTGTATTTCTTGGAACCCTTCAAG|GTTTACTCCAACCGACTACTGCCCTGTGCTGCGTGCCTACACTTTCCTCATCCAGTCTGCTAGCAGTCAGAACGATCTTGCTAACAAGTAAATATGATCAGCCCAGAGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGCtGATCACCTGAGGTCAGGAGTTCGAG MGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSr|ftptdycpvlraytfliqsassqndlank* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5939 TTI1::KIAA1755 ENSG00000101407.13::ENSG00000149633.12 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 563 TRUE 1030 TRUE 382 TTI1 ENSG00000101407.13 protein_coding - - chr20:37983007-38033461:- chr20:38033404:- chr20:36611409-36661863:- chr20:36661806:- KIAA1755 ENSG00000149633.12 protein_coding - - chr20:38210503-38260772:- chr20:38213743:- chr20:36838905-36889174:- chr20:36842145:- chr20:38015098,chr20:38015098,chr20:38015104 chr20:38218106,chr20:38218105,chr20:38218109 NA NA chr20:36643500,chr20:36643500,chr20:36643506 chr20:36846508,chr20:36846507,chr20:36846511 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 0 7 0 51 88 ENST00000373448.6 ENST00000279024.9 upstream downstream duplicates(1) GGGAGAGTGAGAGAAAGGCTGGAAGACGAG|ATGACCTGGTTCCACATGGACTGTCAGGACCTGATGGCCCAGCTCAGGCTGGACAAGACCTCAAGGGTCAGTCCTGGGGACCAGCGCCGCCTCCACCGCTACCTGCAGCGACTGGCATCTGAGTTCCCTGCTGAGAAGCTCGCAGCCGTGGGGCTGCAGGTGGCCTCCCTGAGCCGGGCAGGCCTGGGCCAGGAGCTATGGGAGGAGGCCCGGATCAGGCATGAGGAGATCCGGATGCTCCTGGAGAAGGCACTGACCCACAGCTCTTGCCCAGAGGCTCCAGCTGCTCACTCAGCGCGCCCAGAACGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5940 TTI1::KIAA1755 ENSG00000101407.13::ENSG00000149633.12 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1030 TRUE 382 TTI1 ENSG00000101407.13 protein_coding - - chr20:37983007-38033461:- chr20:38019005:- chr20:36611409-36661863:- chr20:36647407:- KIAA1755 ENSG00000149633.12 protein_coding - - chr20:38210503-38260772:- chr20:38213743:- chr20:36838905-36889174:- chr20:36842145:- chr20:38015098,chr20:38015098,chr20:38015104 chr20:38218106,chr20:38218105,chr20:38218109 NA NA chr20:36643500,chr20:36643500,chr20:36643506 chr20:36846508,chr20:36846507,chr20:36846511 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 1 0 0 57 88 ENST00000373448.6 ENST00000279024.9 upstream downstream duplicates(1) GACCTGCTCACTCTGTCACCGAGGCTAGAGTgCAGTGGCACAATCACAGCTCATTGCAGCCTCAACCTCCCAGGCTCAATCGATCCTTCCAACTGAGCCTC...ATTAGTGCACACCACCACACCTAG|ATGACCTGGTTCCACATGGACTGTCAGGACCTGATGGCCCAGCTCAGGCTGGACAAGACCTCAAGGGTCAGTCCcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5941 TTI1::KIAA1755 ENSG00000101407.13::ENSG00000149633.12 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1030 TRUE 382 TTI1 ENSG00000101407.13 protein_coding - - chr20:37983007-38033461:- chr20:38033404:- chr20:36611409-36661863:- chr20:36661806:- KIAA1755 ENSG00000149633.12 protein_coding - - chr20:38210503-38260772:- chr20:38217474:- chr20:36838905-36889174:- chr20:36845876:- chr20:38015098,chr20:38015098,chr20:38015104 chr20:38218106,chr20:38218105,chr20:38218109 NA NA chr20:36643500,chr20:36643500,chr20:36643506 chr20:36846508,chr20:36846507,chr20:36846511 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 0 51 28 ENST00000373448.6 ENST00000279024.9 upstream downstream duplicates(1) GAGAAAGGCTGGAAGACGAG|GCCCAGTACCGCCGAGGCCTGGAGCTGTCCAAGCAGGCCGCTCAGCTGGGAGCTACAGCCAGAGGGGCTGGGGAGGCAGAACGTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5951 KCNB2::STIM2 ENSG00000182674.6::ENSG00000109689.20 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KCNB2 ENSG00000182674.6 protein_coding + - chr8:72537225-72938349:+ chr8:72871338:- chr8:73449460-73850584:+ chr8:73783573:- STIM2 ENSG00000109689.20 protein_coding + + chr4:26857601-27025381:+ chr4:26995379:+ chr4:26859223-27027003:+ chr4:26997001:+ NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' medium none |SAM_domain_(Sterile_alpha_motif)(99%),STIM1_Orai1-activating_region(100%) |SAM_1(100%),SAM_2(9%),SOAR(100%) 3 0 0 12 74 unknown ENST00000477474.3 upstream upstream duplicates(1) ACAAAGTATGTTTTCTCAAGCACTTTTTAGCTGTAAAGGTAACAACGTAAATTTAAAATAGAAGTGCAGTTGGCAATTTATCCATTTAAATCATATACCTT...TCTAGGGATGTCTTTATAATGCTTTTCACAATGAAGTATACCAATCAAGATTTTGGTATTTTGAGTGTTGGGAACTTTGTGAG|TTCATAATTGGACCCTTGAAGACACTCTTCAGTGGTTGATAGAGTTTGTTGAACTACCCCAATATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5955 PSAT1::CACNB2 ENSG00000135069.14::ENSG00000165995.24 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSAT1 ENSG00000135069.14 protein_coding + + chr9:78297125-78330093:+ chr9:78297270:+ chr9:80912041-80945009:+ chr9:80912186:+ CACNB2 ENSG00000165995.24 protein_coding + - chr10:18140424-18543557:+ chr10:18334448:- chr10:18429353-18832486:+ chr10:18623377:- chr9:78298794,chr9:78298795 chr10:18383660,chr10:18383659 NA NA chr9:80913710,chr9:80913711 chr10:18672589,chr10:18672588 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Aminotransferase_class-V(3%)| Aminotran_5(0%)| 2 0 1 1134 3 ENST00000376588.4 unknown downstream downstream duplicates(1) CCAGGAACGCCAGCCGTTCACGCGTTCGGTCCTCCTTGGCTGACTCACCGCCCTcGCCGCCGCACCATGGACGCCCCCAGGCAGGTGGTCAACTTTGGGCCTGGTCCCGCCAAGCTGCCGCACTCA|ATTGCTTGAAAGTAGGACAGAAGACTGGAGAGGCAAAATGCAGGAGGAGAAAAACCAGACCCCCGTGGGTCTCAAAAGCAGCTCCTGGGATCTCAGTTAAGTGCCCAGTTATTCTGTGATTCcGG MDAPRQVVNFGPGPAKLPHS|ia* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5956 KLRG1::PHC1 ENSG00000139187.10::ENSG00000111752.11 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLRG1 ENSG00000139187.10 protein_coding + + chr12:8950044-9010760:+ chr12:8992310:+ chr12:9102640-9163356:+ chr12:9144906:+ PHC1 ENSG00000111752.11 protein_coding + + chr12:8913896-8941467:+ chr12:8930435:+ chr12:9066492-9094063:+ chr12:9083031:+ chr12:8993823 chr12:8927914 NA NA chr12:9146419 chr12:9080510 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none |SAM_domain_(Sterile_alpha_motif)(100%),Unstructured_region_on_Polyhomeotic-like_protein_1_and_2(100%) |PHC2_SAM_assoc(100%),SAM_1(100%),SAM_2(100%) 1 1 1 7 260 ENST00000539240.5 ENST00000544916.6 downstream upstream duplicates(5),mismatches(2) GGACGCTGTTCCGCCGCGTGGAAGCTTCGAGTCTCGAaTCCACTGTTGACCCCTAGAaGAGAGTAGTGCAGCGACGGGGCCGTGATGTGCGTaCTGGCTTT...CTGAGACAGACAG___CTTCCTCTTCCAGGCCTTCTTGTTCTTGCCTTGTGGCAATAGCTTTGGGGCTTCTGACTGCAGTTCTTCTGAGTGTGCTGCTATACCAGTGGATCCTGTGCCAGG|GTTCAGAACTTGGCAGTAAGGAATCAACAGGCCTCAGCTCAAGGACCTCAGATGCAAGGCTCCACTCAGAAGGCCATTCCTCC...AGCCTCCCCTGTCTCTAGCCTCTCCCAGGCCTCTAGCCAGGCCCTAGCGGTGGCACAGGCTTCCTCTGGGGCCACAAACCAGTCCCTCAACCTTAGTCAAGCTGGTGGAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5960 CKLF::CMTM4 ENSG00000217555.13::ENSG00000183723.13 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CKLF ENSG00000217555.13 protein_coding + + chr16:66552563-66566251:+ chr16:66552793:+ chr16:66586466-66600154:+ chr16:66586696:+ CMTM4 ENSG00000183723.13 protein_coding - + chr16:66614750-66696743:- chr16:66649539:+ chr16:66648653-66730646:- chr16:66683442:+ chr16:66554689,chr16:66554690 chr16:66639360,chr16:66639358 NA NA chr16:66588592,chr16:66588593 chr16:66673263,chr16:66673261 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 3 0 378 5 ENST00000534692.1 unknown downstream upstream duplicates(1) GTGCAGCCGAAAATAAAACATCGCCCCTTCTGCTTCAGTGTGAAAGGCCACGTGAAGATGCTGCGGCTG|GTCATTTCAAATCTATTGAAGAGTATATCCCAATTTAATCATGACTTATATCACCTGGTGTCCTGCAGACTCCACAGTGGGAGCAG___?TTTCAGACCCCAGACAAtCCTGAAGTGTCAGAGGCAATGCAGCAGCAGGAGGCTACAGATGTCCACAACAGAGGAGTCGACTCAGAG VQPKIKHRPFCFSVKGHVKMLRL|visnllksisqfnhdlyhlvscrlhsgs?fqtpdnpevseamqqqeatdvhnrgvds NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5961 CKLF-CMTM1::CMTM4 ENSG00000254788.7::ENSG00000183723.13 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CKLF-CMTM1 ENSG00000254788.7 protein_coding + + chr16:66552587-66579135:+ chr16:66552793:+ chr16:66586490-66613038:+ chr16:66586696:+ CMTM4 ENSG00000183723.13 protein_coding - + chr16:66614750-66696743:- chr16:66649539:+ chr16:66648653-66730646:- chr16:66683442:+ chr16:66554689,chr16:66554690 chr16:66639360,chr16:66639358 NA NA chr16:66588592,chr16:66588593 chr16:66673263,chr16:66673261 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 3 0 378 5 ENST00000527729.5 unknown downstream upstream duplicates(1) GTGCAGCCGAAAATAAAACATCGCCCCTTCTGCTTCAGTGTGAAAGGCCACGTGAAGATGCTGCGGCTG|GTCATTTCAAATCTATTGAAGAGTATATCCCAATTTAATCATGACTTATATCACCTGGTGTCCTGCAGACTCCACAGTGGGAGCAG___?TTTCAGACCCCAGACAAtCCTGAAGTGTCAGAGGCAATGCAGCAGCAGGAGGCTACAGATGTCCACAACAGAGGAGTCGACTCAGAG VQPKIKHRPFCFSVKGHVKMLRL|visnllksisqfnhdlyhlvscrlhsgs?fqtpdnpevseamqqqeatdvhnrgvds NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5982 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 565 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103910321:+ chr8:104512838-105266658:+ chr8:104922549:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none LysM_domain(100%)|C2_domain(100%),PDZ_domain(100%) LysM(100%)|C2(100%),PDZ(100%),PDZ_6(100%) 24 34 69 542 145 ENST00000517566.7 ENST00000696799.1 downstream upstream duplicates(24),mismappers(1),mismatches(4) TCCTGAATATGTCTCCAGTGTTGAGAGCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGTCACCAACATCATCTGAGGCTGAATTTGATAAGACCACT___AATCCTGATGTCCATCCAACAGAAGCAACTCCCTCATCTACTTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTTACTGAGAAATTTCTTAAAATTAATTGCAAATATATTACCAGTGGCAAG|GGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGCAGTTTTGTCGGACTCTAACACCAGGTCTGAGAGACAAAAGGAAATGATGTACTTTGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAACCTCAGATTAAGGACTCTGGGGTAGATACGTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAG___CACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTAC PEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGK|gtvkrekeklvsrqfcrtltpglrdkrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5983 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 566 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103910134:+ chr8:104512838-105266658:+ chr8:104922362:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none LysM_domain(100%)|C2_domain(100%),PDZ_domain(100%) LysM(100%)|C2(100%),PDZ(100%),PDZ_6(100%) 16 18 73 542 48 ENST00000517566.7 ENST00000666250.1 downstream upstream duplicates(27),mismatches(4) GCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGTCACCAACATCATCTGAGGCTGAATTTGATAAGACCACT___AATCCTGATGTCCATCCAACAGAAGCAACTCCCTCATCTACTTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTTACTGAGAAATTTCTTAAAATTAATTGCAAATATATTACCAGTGGCAAG|GAGACATGGATTACAACTGGTTGGATCATACGTCTTGGCATAGCAGTGAGGCATCCCCAATGTCTTTG___CACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAG___GTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAA SPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGK|etwittgwiirlgiavrhpqclctl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5984 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 567 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103912053:+ chr8:104512838-105266658:+ chr8:104924281:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none LysM_domain(100%)|C2_domain(100%),PDZ_domain(100%) LysM(100%)|C2(100%),PDZ(100%),PDZ_6(100%) 7 11 36 542 214 ENST00000517566.7 ENST00000696799.1 downstream upstream duplicates(8),mismatches(2) TCCTGAATATGTCTCCAGTGTTGAGAGCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGTCACCAACATCATCTGAGGCTGAATTTGATAAGACCACT___AATCCTGATGTCCATCCAACAGAAGCAACTCCCTCATCTACTTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTTACTGAGAAATTTCTTAAAATTAATTGCAAATATATTACCAGTGGCAAG|CACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAG___GTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAG___GTGATGAAGTATTAGAATGGAATGGAAGACTAC PEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGK|HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5990 PTPN12::PHTF2 ENSG00000127947.16::ENSG00000006576.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 568 TRUE 1037 TRUE 384 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77600806:+ chr7:77166612-77269386:+ chr7:77230123:+ PHTF2 ENSG00000006576.17 protein_coding + + chr7:77798773-77957503:+ chr7:77920279:+ chr7:77428090-77586820:+ chr7:77549596:+ chr7:77605420,chr7:77605420 chr7:77914342,chr7:77914333 NA NA chr7:77234737,chr7:77234737 chr7:77543659,chr7:77543650 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Protein-tyrosine_phosphatase(74%)| Y_phosphatase(74%)| 23 8 34 703 558 ENST00000248594.11 ENST00000416283.6 downstream upstream duplicates(9),low_entropy(4),mismappers(1),mismatches(4) AAAAAATGTGAGCGCTATTGGCCTTTGTATGGAGAAGACCCCATAACGTTTGCACCATTTAAAATTTCTTGT___GAGGATGAACAAGCAAGAACAGACTACTTCATCAGGACACTCTTACTTGAATTTCAAAAT___GAATCTCGTAGGCTGTATCAGTTTCATTATGTGAACTGGCCAGACCATGATGTTCCTTCATCATTTGATTCTATTCTGGACATGATAAGCTTAATGAGGAAATATCAAGAACATGAAGATGTTCCTATTTGTATTCATTGCAG|ATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAA___GATACCCAAA KKCERYWPLYGEDPITFAPFKISCEDEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSILDMISLMRKYQEHEDVPICIHCr|SKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGTLRNGPSKDTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST no_match 77639324 FALSE 77893592 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5991 PTPN12::PHTF2 ENSG00000127947.16::ENSG00000006576.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1037 TRUE 384 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77592256:+ chr7:77166612-77269386:+ chr7:77221573:+ PHTF2 ENSG00000006576.17 protein_coding + + chr7:77798773-77957503:+ chr7:77920279:+ chr7:77428090-77586820:+ chr7:77549596:+ chr7:77605420,chr7:77605420 chr7:77914342,chr7:77914333 NA NA chr7:77234737,chr7:77234737 chr7:77543659,chr7:77543650 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Protein-tyrosine_phosphatase(45%)| Y_phosphatase(52%)| 1 0 6 812 558 ENST00000248594.11 ENST00000416283.6 downstream upstream duplicates(1),mismatches(2) CCTTCACAAGATTCAGACTATATCAATGCAAATTTTATAAAG___GGCGTCTATGGGCCAAAAGCATATGTAGCAACTCAAGGACCTTTAGCAAATACAGTAATAGATTTTTGGAGGATGATATGGGAGTATAATGTTGTG___ATCATTGTAATGGCCTGCCGAGAATTTGAGATGGGAAGG___AAAAAATGTGAGCGCTATTGGCCTTTGTATGGAGAAGACCCCATAACGTTTGCACCATTTAAAATTTCTTGT|ATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAA___GATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTCTCC PSQDSDYINANFIKGVYGPKAYVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPFKISC|ikeskefn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST no_match 77639324 FALSE 77893592 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5992 AXIN1::MAP3K19 ENSG00000103126.15::ENSG00000176601.14 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AXIN1 ENSG00000103126.15 protein_coding - - chr16:287440-352723:- chr16:346148:- chr16:337440-402723:- chr16:396148:- MAP3K19 ENSG00000176601.14 protein_coding - + chr2:134964485-135047468:- chr2:134997921:+ chr2:135722055-135805038:- chr2:135755491:+ chr16:343203,chr16:343182,chr16:343179,chr16:343159,chr16:343143 chr2:134969259,chr2:134969259,chr2:134969259,chr2:134969259,chr2:134969259 NA NA chr16:393203,chr16:393182,chr16:393179,chr16:393159,chr16:393143 chr2:135726829,chr2:135726829,chr2:135726829,chr2:135726829,chr2:135726829 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Axin-1_tankyrase_binding_domain(100%),Regulator_of_G_protein_signaling_domain(100%)| AXIN1_TNKS_BD(100%),RGS(100%)| 9 5 26 297 38 ENST00000262320.8 unknown upstream upstream duplicates(5) GACAGGCTCGGAGAGCCCCAAAGTCTGTAGTGACCAGAGCTCTGGGTCAGGGACAGGGAAGGGCATATCTGGATACCTGCCGACCTTAAATGAAGATGAGGAATGGAAGTGTGACCAGGACATGGAcGAGGACGATGGCAGAGACGCTGCTCCCCCCGGAAGACTCCCTCAGAAGCTGCTCCTGGAGACAGCTGCCCCGAGGGTCTCCTCCAGTAGACGGTACAGCGAAGGCAGAGAGTTCAG|GATGTGTCACAGCTCCACTGGCATGCAGTCTCCCTCATTGTGATAAATCAATGAATGTAACTTGTTGGATTATAAGGTTGTTCCTGGTGGTTTTGGCTGGTTGGTTGAGGACAGTGGTAAACAAGTAGCAAAGACAATgTTGCCGCAGGGGGAAATGCTGGCATCAGTGCTGCTATCTAGCAAATGAGTCTTGGGCTCAATGTAGTTGGAAGTTGGCTCTTAGACTTGCACATTAACTTGGGGATCCAGGAATAAGGCTAACGTAGACTCAAGTCCATAATGACC TGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLETAAPRVSSSRRYSEGREFr|mchsstgmqspsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE axin 1 1 Yes colorectal, endometrial, prostate, hepatocellular carcinoma, hepatoblastoma, sporadic medulloblastoma epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 5994 AKAP8L::BRD4 ENSG00000011243.19::ENSG00000141867.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AKAP8L ENSG00000011243.19 protein_coding - - chr19:15380050-15419141:- chr19:15397150:- chr19:15490861-15529952:- chr19:15507961:- BRD4 ENSG00000141867.19 protein_coding - - chr19:15235519-15332545:- chr19:15273133:- chr19:15346330-15443356:- chr19:15383944:- chr19:15391863 chr19:15310633 NA NA chr19:15502674 chr19:15421444 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none A-kinase_anchoring_protein_95_(AKAP95)(72%)|Bromodomain(100%),Bromodomain_extra-terminal_-_transcription_regulation(100%),C-terminal_domain_of_bromodomain_protein_4(100%) AKAP95(3%)|BET(100%),BRD4_CDT(100%),Bromodomain(100%) 10 6 12 327 113 ENST00000595465.6 ENST00000679869.1 upstream downstream duplicates(6),low_entropy(2) CCCTAAGCAGACGGCTGACTTTCTGCAG___GAGTACGTCACTAACAAGACCAAGAAGACAGAGGAGCTCCGAAAAACCGTGGAGGACCTTGATGGCCTCATCCAGCAAATCTACAGAGACCAGGATCTGACCCAGG___AAATTGCCATGGAGCATTTTGTGAAGAAGGTGGAGGCAGCCCATTGTGCAGCCTGCGACCTCTTCATTCCCATGCAGTTTGGGATCATCCAGAAGCATCTGAAGACCATGGATCACAACCGGAACCGCAGG|AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTC PKQTADFLQEYVTNKTKKTEELRKTVEDLDGLIQQIYRDQDLTQEIAMEHFVKKVEAAHCAACDLFIPMQFGIIQKHLKTMDHNRNRR|saw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE BRD4 protein Atypical BRD O60885 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bromodomain containing 4 1 Yes lethal midline carcinoma of young people epithelial oncogene, fusion translocation 5995 C5orf24::SNX25 ENSG00000181904.9::ENSG00000109762.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 569 TRUE 1038 TRUE 385 C5orf24 ENSG00000181904.9 protein_coding + + chr5:134845680-134859735:+ chr5:134846212:+ chr5:134181370-134195425:+ chr5:134181902:+ SNX25 ENSG00000109762.17 protein_coding + + chr4:185204237-185370185:+ chr4:185264438:+ chr4:186125391-186291339:+ chr4:186185592:+ chr5:134850225,chr5:134850225 chr4:185263836,chr4:185263833 NA NA chr5:134185915,chr5:134185915 chr4:186184990,chr4:186184987 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |PXA_domain(48%),PX_domain(100%),Regulator_of_G_protein_signaling_domain(100%),Sorting_nexin_C_terminal(100%) |Nexin_C(100%),PX(100%),PXA(13%),RGS(100%) 4 12 9 32 96 ENST00000394976.4 ENST00000504273.5 downstream upstream duplicates(2),low_entropy(1) GGGAGCCAGCGCCTGCCTCGCCGCCGCCCTCGCTGCCTGCCACTCCGTCTTGGCCCGTTCTCCGCACCGTGCAGAGGCGGCGGGCTGGGGAGGGAGCGGCGCCAGCACGAGGTTCCCAGCCGCTGGGAAGCCCCTAGACGCGCCGAGGGGCCGGGCTACGAGCGGCTGAG|ACATGAAGAACAGCCAAGACCTTTTGTGTTGCACGCATGCTTGAGGAACTCAGATGATGAAGTAAGATTTCTACAAACGTGTTCTCGGGTTCTGGTGTTTTGTCTCCTCCCCTCAAAGGATGTGCAGTCTCTCAGCTTACGTATAATGCTTGCAGAAATTCTCACAACAAAAG___TCTTGAAGCCGGTAGTGGAGTTACTGAGTAATCCAGATTACATTAACCAAATGCTGCTTGCCCAGCTGGCGTACAGAGAGCAAATGAATGAGCATCACAAGAGAGCCTACACCTATGCCCCCTCTTACGAGGACTTCATCAAGCTCATTAACAGCAACTCTGATGTGGAGTTCTTGAAGCAACTAAG___GTATCAAATTGTAGTGGAAATAATCCAGGCGACTACAATTAGCAGCTTTCCCCAACTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5996 C5orf24::SNX25 ENSG00000181904.9::ENSG00000109762.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1038 TRUE 385 C5orf24 ENSG00000181904.9 protein_coding + + chr5:134845680-134859735:+ chr5:134846863:+ chr5:134181370-134195425:+ chr5:134182553:+ SNX25 ENSG00000109762.17 protein_coding + + chr4:185204237-185370185:+ chr4:185264438:+ chr4:186125391-186291339:+ chr4:186185592:+ chr5:134850225,chr5:134850225 chr4:185263836,chr4:185263833 NA NA chr5:134185915,chr5:134185915 chr4:186184990,chr4:186184987 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |PXA_domain(48%),PX_domain(100%),Regulator_of_G_protein_signaling_domain(100%),Sorting_nexin_C_terminal(100%) |Nexin_C(100%),PX(100%),PXA(13%),RGS(100%) 0 0 0 3 96 ENST00000435259.2 ENST00000504273.5 downstream upstream mismatches(1) GCTATTGGCCTCTGCTGAATGGACTTTCAGAGTGATTGAG|ACATGAAGAACAGCCAAGACCTTTTGTGTTGCACGCATGCTTGAGGAACTCAGATGATGAA...CATTAACCAAATGCTGCTTGCCCAGCTGGCGTACcGAGAGCAAATGAATGAtCATCACAAGAGAGCaTACcCCTATGCCCCCTCTaACGAGGACTTCATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5997 ULK2::SLC47A2 ENSG00000083290.20::ENSG00000180638.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 570 FALSE NA FALSE NA ULK2 ENSG00000083290.20 protein_coding - - chr17:19770829-19867936:- chr17:19826139:- chr17:19674142-19771249:- chr17:19729452:- SLC47A2 ENSG00000180638.19 protein_coding - - chr17:19678288-19718979:- chr17:19715217:- chr17:19581601-19622292:- chr17:19618530:- chr17:19825631,chr17:19825646 chr17:19716432,chr17:19716445 NA NA chr17:19728944,chr17:19728959 chr17:19619745,chr17:19619758 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Protein_kinase_domain(100%)|MatE(99%) ABC1(100%),Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RIO1(100%)|MatE(95%) 9 5 11 49 32 ENST00000361658.6 ENST00000350657.9 upstream downstream duplicates(8),mismappers(1),mismatches(5) CTAG___TATTCCCAGAGAAACATCACCTTATTTGGCTAATCTCCTTTTGGGTTTGCTTCAGAGAAACCAAAAAGATAGAATGGACTTTG___AAGCgTTTTTTAGCCATCCTTTTCTTGAGCAAGGTCCAGTAAAAAAAT|TTCCTGTTCCAGGTGCTGACTTTTATGATCTACATCGTGAGCACTGTGTTCTGCGGGCACCTGGGCAAGGTGGAGCTGGCATCGGTGACCCTCGCGGTGGCC___TTTGTCAATGTCTGCGGAGTTTCTGTAGGAGTTGGTTTGTCTTCGGCATGTGACACCTTGATGTCTCAG SIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQGPVKK|fpvpgadfydlhrehcvlrapgqggagigdprgglcqclrsfcrswfvfgm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase ULK2 Other ULK Q8IYT8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 5999 UBR5::ENSG00000253420 ENSG00000104517.13::ENSG00000253420.1 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBR5 ENSG00000104517.13 protein_coding - - chr8:102252273-102412759:- chr8:102360071:- chr8:103264501-103424987:- chr8:103372299:- ENSG00000253420 ENSG00000253420.1 lncRNA - - chr8:105662352-105685765:- chr8:105662941:- chr8:106674580-106697993:- chr8:106675169:- chr8:102355963,chr8:102355965 chr8:105666575,chr8:105666575 NA NA chr8:103368191,chr8:103368193 chr8:106678803,chr8:106678803 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 4 11 8 91 33 ENST00000520539.6 ENST00000520588.1 upstream downstream duplicates(7),low_entropy(1),mismatches(1) CATCACTGTACGCTGCAGCATCAACCTCCCAGGCTGAAGAGATTCTCCCACTTTGGCCTCTGAAGTAGAG___GTTACGAGAAGTTTCTGAGAAGCTGAACAAA...ATGCTGCCTTTCTTCTTGAG___GATGGTAGAGTTTGCAGGATTGGTTTTTCAGTACAGCCAGACAGATTGGAATTGGGTAAACCTGATAATAATGATGG___GTCAAAGTTGAACAGCAACTCGGGGGCAGGGAGGACGTCAAGGCCTGGTAGGACAAGCGACTCTCCATGGTTTCTCTCAGGTTCTGAGACTCTAGGCAGGCTGGCAGGCAACACCTTAGG|GTGGAGTGCCGGAATTCAGGGGAATCTGTGTTATCATGCACACTCTTCTCTGAGGATAGAATCACAGGCACACCAAAAACTAGCCATCGCCGTTAGGGACGGCATCAGAAGGGACAGCCCCAAAAGATTACACAGGACAAAAGAAGTGGTCAAATACAAGGATTCCTTT___AGAAAGAACCTCTCTGTCAACAAGCCTCTCCGGAGTGGAAGATTAAAA...TGGGTTGTGTAAAACTCAATTAAACGTGTCCCCATTGAAT?CTGCATTACAGTACATTAAACAGAAAATTCTTCAAGCGTGATGACAAAGCTTG AAFLLEDGRVCRIGFSVQPDRLELGKPDNNDGSKLNSNSGAGRTSRPGRTSDSPWFLSGSETLGRLAGNTLg|wsagiqgnlcyhahsslriesqahqklaiavrdgirrdspkrlhrtkevvkykdsfrknlsvnkplrsgrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ubiquitin protein ligase E3 component n-recognin 5 1 Yes mantle cell lymphoma, gastric, colorectal leukaemia_lymphoma, epithelial oncogene frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6000 GATB::FHIP1A ENSG00000059691.12::ENSG00000164142.16 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GATB ENSG00000059691.12 protein_coding - - chr4:151670504-151761007:- chr4:151701329:- chr4:152591656-152682159:- chr4:152622481:- FHIP1A ENSG00000164142.16 protein_coding + - chr4:151409176-151670503:+ chr4:151621286:- chr4:152330328-152591655:+ chr4:152542438:- chr4:151690301,chr4:151690309 chr4:151652578,chr4:151652579 NA NA chr4:152611453,chr4:152611461 chr4:152573730,chr4:152573731 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none GatB/GatE_catalytic_domain(100%)| GatB_N(100%)| 13 5 5 87 24 ENST00000263985.11 unknown upstream downstream duplicates(3),mismatches(1) CAACAGCATCAGGTTCCTGGCCAAAGCCATAG___ACTATGAAATTCAGAGGCAAATCAATGAACTTGAGAATGGAGGTGAAATTCTGAACGAAACACGCTCATTTCATCACAAGCTGGG___GTGCACCATGTCAATGAGAGACAAAGAAGGAAAACAGGACTACAG___GTTCATGCCAGAACCCAACCTGCCTCCCCTGGTGCTCTACGACGCCACATCTCTGCCCGCAGGTGCAGACCCACAGCAAGTGATCAATATTGACCAGATTCGGGAGACACTCCCGGAGCTCCCCAGTGTGACCCGAGAGAAGCTTGTCCAACAGTATGGGATGCTGCTGGAACACAGCTTCACTTTGCTG|ACCTGCACATCATCTGGCACTGGATAATCACAGAGGAGCATCCCATCAGAATGATTCCTGCTTTACCTCACCTGAAACGCAAGTCAGACACAAAAATGAGGGGACAGCAAGCCCTCAAAAAAAACTTAGTGTGCGGTGA NSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDKEGKQDYRFMPEPNLPPLVLYDATSLPAGADPQQVINIDQIRETLPELPSVTREKLVQQYGMLLEHSFTLL|tctssgtg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6004 MKRN2::TSEN2 ENSG00000075975.17::ENSG00000154743.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 571 TRUE 1039 TRUE 386 MKRN2 ENSG00000075975.17 protein_coding + + chr3:12557057-12586208:+ chr3:12557176:+ chr3:12598556-12627707:+ chr3:12598675:+ TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12528888:+ chr3:12525920-12583048:+ chr3:12570387:+ chr3:12561533 chr3:12523344 NA NA chr3:12603032 chr3:12564843 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none CCCH-type_zinc_finger(6%)|tRNA_intron_endonuclease__catalytic_C-terminal_domain(66%) zf-CCCH(0%),zf-CCCH_2(0%),zf-CCCH_4(0%)|tRNA_int_endo(51%) 0 18 3 112 88 ENST00000677816.1 ENST00000681140.1 downstream upstream duplicates(3) GCCAAGGCCGAGGCGGCAGCGGCTGCGAGAGGCGGCGGCACGACGACGGTCCCTCAGCCCAGCCACCATGAGCACCAAGCAGATCACTTGCAG|TGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAG___TTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAG___GAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAG___GAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTTTAACAATTCAACCTCAAATTTCTAATTTCA MSTKQITCs|aiserpsilpcklfchyras* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6005 MKRN2::TSEN2 ENSG00000075975.17::ENSG00000154743.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 572 TRUE 1039 TRUE 386 MKRN2 ENSG00000075975.17 protein_coding + + chr3:12557057-12586208:+ chr3:12557176:+ chr3:12598556-12627707:+ chr3:12598675:+ TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12529762:+ chr3:12525920-12583048:+ chr3:12571261:+ chr3:12561533 chr3:12523344 NA NA chr3:12603032 chr3:12564843 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CCCH-type_zinc_finger(6%)|tRNA_intron_endonuclease__catalytic_C-terminal_domain(52%) zf-CCCH(0%),zf-CCCH_2(0%),zf-CCCH_4(0%)|tRNA_int_endo(46%) 0 11 2 112 96 ENST00000677816.1 ENST00000681140.1 downstream upstream duplicates(3) GGCCAGGGCCAAGGCCGAGGCGGCAGCGGCTGCGAGAGGCGGCGGCACGACGACGGTCCCTCAGCCCAGCCACCATGAGCACCAAGCAGATCACTTGCAG|TTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAG___GAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAG___GAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTTTAACAATTCAACCTCAAATTTCTAATTTCAC MSTKQITCs|YSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6007 PNO1::ZFPM2-AS1 ENSG00000115946.8::ENSG00000251003.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PNO1 ENSG00000115946.8 protein_coding + + chr2:68157888-68176238:+ chr2:68162663:+ chr2:68385020-68403370:+ chr2:68389795:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105787596:- chr8:106558317-107072752:- chr8:106799824:- chr2:68163033 chr8:105796251 NA NA chr2:68390165 chr8:106808479 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 5 6 4 264 19 ENST00000263657.7 ENST00000524045.6 downstream downstream duplicates(2),mismatches(1) CTTTAACTTGAAATCAAGGAATGTAGAAATCAGG___ACTTGTAAAGAAACCAAGGATGTTAGTGCTCTGACAAAAGCAGCTGATTTTGTGAAAGCTTTTATTCTCGGCTTTCAGGTGGAG___GATGCACTTGCCCT...GTTGGATGACCTCTTCCTAGAGTCTTTTGAAATTACAGATG___TTAAACCCCTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATCGCTGGCAAAGGAGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACAAGGATAGTTTTGGCTGATGT|AGCTCATGGTTTTTAAACAACTTGTGGTAAAAATCTGGTGGAAAAGATAACAACAGTATATGATATGGCAGAGTTGCACAGAAGAATCAGAACATTGTTTTAGAGAAACGTTGGGCAATTAATTAAGCCAGCTGATTAAGTTTTAAAG___AAGCTAAACCATATCATGTCGAAATCAGAGGAGCGATGA LDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADv|ahgf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6011 MARS1::BTG1-DT ENSG00000166986.15::ENSG00000245904.6 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57490644:+ chr12:57869228-57911352:+ chr12:57884427:+ BTG1-DT ENSG00000245904.6 lncRNA + + chr12:92145573-92226557:+ chr12:92213833:+ chr12:92539349-92620333:+ chr12:92607609:+ chr12:57492258,chr12:57492270 chr12:92203304,chr12:92203307 NA NA chr12:57886041,chr12:57886053 chr12:92597080,chr12:92597083 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Glutathione_S-transferase__C-terminal_domain(100%),Glutathione_S-transferase__N-terminal_domain(100%)| GST_C(100%),GST_N_5(100%),PH(100%),SH3_1(100%),WW(100%),tRNA-synt_1g(0%)| 5 4 5 342 16 ENST00000537638.6 ENST00000654992.1 downstream upstream duplicates(2) CTACCTCCCTG___AGGAGCTGAGTGCCCTGCACAGCTGGTTCCAGACACTGAGTACCCAGGAACCATGTCAGCGAGCTGCAGAGACTGTACTGAAACAGCAAGGTGTCCTGGCTCTCCGGCCTTACCTCCAAAAGCAGCCCCAGCCCAGCCCCGCTGAGGGAAGGGCTGTCACCAATGAGCCTGAG___GAGGAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGGCTGTTACTGCTTGGGAGAAGGGCCTAGAAAGTTTGCCCCCGCTGCGGCCCCAGCAGAATCCAGT|CTTTAGATGCTAACATTGAAGATGCACAACCATGAGGATGTAGGAGACTGGATCCCTGAATCACTGCTTGGATGATAGCAGCAAGCTTCTTTGGCGTTAAACAACTTAGATATTCTGATAAAGCATCTACTGTTGCCTTAATTAAGGAGAGATGGATAATATTTTCTTGGATGAAAGTGATAGAGGTGAGGATGAAGAGAAGTGGTCAGATTCTACATACAATTATCAGAGAAACAGGAaTTCCTGAGAATATGGATATGATGAGAAG___AAAGGAAGTCTTGCCATGTTGTCCAGATTGGTCCCAAACTCCTGGGCTCAAGCGATCAG YLPEELSALHSWFQTLSTQEPCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPv|frc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6012 RIMS2::ADGRL3 ENSG00000176406.25::ENSG00000150471.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103975506:+ chr8:104512838-105266658:+ chr8:104987734:+ ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61497121:+ chr4:62066044-62944053:+ chr4:62362839:+ chr8:103983607,chr8:103983608 chr4:61424102,chr4:61424100 NA NA chr8:104995835,chr8:104995836 chr4:62289820,chr4:62289818 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none C2_domain(50%),FYVE-type_zinc_finger(100%),PDZ_domain(100%)|7_transmembrane_receptor_(Secretin_family)(100%),GPCR-Autoproteolysis_INducing_(GAIN)_domain(100%),GPCR_proteolysis_site__GPS__motif_(100%),Galactose_binding_lectin_domain(100%),Latrophilin_Cytoplasmic_C-terminal_region(100%),Olfactomedin-like_domain(100%) C2(84%),FYVE_2(100%),PDZ(100%),PDZ_6(100%)|7tm_2(100%),GAIN(100%),GPS(100%),Gal_Lectin(100%),Latrophilin(100%),OLF(100%) 5 1 7 233 10 ENST00000696799.1 ENST00000512091.6 downstream upstream low_entropy(1) ATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAA___GGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAG___ATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAG|GTTTCAGATTTGGGATATTGGTGTTTCTGTTTTGGAGAAATTATTCTTTTTCTTTTTAATTTGAAGAAAAATCATCAGTCTTGGAATACAGAAGAGAAACTAGAAATATACGTATTTTGTTTCACATTTGAACAGTCATTCTTGAGGAATACTCCATACCTGAGTAGACAGCCATGTGGCCATCGCAGCTACTAATTTTCATGATGCTCTTAGCTCCAATAATTCATG___CTTTCAGCCGTGCCCCAATTCCAATGGCTG MPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVPEQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQr|fqiwdigvsvleklffffli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6015 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1042 TRUE 387 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73047752:- chr16:72816784-73925770:- chr16:73081651:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72391215:- chr16:72270180-72698913:- chr16:72425114:- chr16:72965395,chr16:72965398 chr16:72410311,chr16:72410301 NA NA chr16:72999294,chr16:72999297 chr16:72444210,chr16:72444200 NA NA sense sense unknown 5'UTR/splice-site intron deletion high none none none 2 4 6 34 25 ENST00000268489.10 ENST00000624829.4 upstream downstream duplicates(3) CCGCGCCCCGTGGGTGAATCCCCGCCGCGTCCCGGGGACCTCCCTCCGGGGACGGGCCGACCGCCAGCCCTGCCGCCACCATGAGCTCCCCTCCCCTGTCT...CCGAGTCCTGGGGCCAGCGGGAGGTGGGGAGCATGCCGCCTGGGGTGGGTGAGCTCGGGGCTCGGGTGCCACTGGAATTTCCCGTTGTTGCGCATGGCGGCGCGGCCCCCGGACCTGCAAGTGCCGCCTCCCTCCGGAGGTGCGCGGAGGCTTGGTGTGCCAG|GGAACTCACAAGGGCTTCGGTTCTCAAGAGGCCATCAAAACATAACTGCTGCCGAGACAATACCTTTCCTTCCCC...ACACCTTTGGATCTTATAAGCTACTTGGAAAA___ATTTTAAAGCACCTGATGGATTTGGAAAATATTTAATGAAGACAATGATGCTGACATCTCAAGTTAAAAG___GTTCTACAGAGAAGGCAAAGATTTTGAAGGCACAGGAGACTATCATAGATATTCACAACGGCATCTCCCTAAAGGATTTGAAAGCTTTGCATCAACCAAAGGAAAAGCACCAGTGAGAG...GATGTGGATGGGTCCTAGATCTGACTGCTGATATCCTTATAAGAAGAAGAAAGGACACGCGGAGACTACAGTGATGTTGCCACAAGCCAAGAAATGCCAAG...TCCTCAGGTGTCTCATTTCTTCTGTCTCAGAAGTCATGGATGTCAATGAAGATATGGAATTCACTTATTCATTCTTATAAATATTACTTAGTGTCCaTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6016 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1042 TRUE 387 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73047752:- chr16:72816784-73925770:- chr16:73081651:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72368722:- chr16:72270180-72698913:- chr16:72402621:- chr16:72965395,chr16:72965398 chr16:72410311,chr16:72410301 NA NA chr16:72999294,chr16:72999297 chr16:72444210,chr16:72444200 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 0 3 5 34 16 ENST00000268489.10 ENST00000624829.4 upstream downstream duplicates(2) CCTGGGGCCAGCGGGAGGTGGGGAGCATGCCGCCTGGGGTGGGTGAGCTCGGGGCTCGGGTGCCACTGGAATTTCCCGTTGTTGCGCATGGCGGCGCGGCCCCCGGACCTGCAAGTGCCGCCTCCCTCCGGAGGTGCGCGGAGGCTTGGTGTGCCAG|ATTTTAAAGCACCTGATGGATTTGGAAAATATTTAATGAAGACAATGATGCTGACATCTCAAGTTAAAAG___GTTCTACAGAGAAGGCAAAGATTTTGAAGGCACAGGAGACTATCATAGATATTCACAACGGCATCTCCCTAAA...ACCAGTGAGAGTCAAGATACAGTTCCAGACAGGTGCTACTTCTTATTCAAAAG___GCCTCATCAGTGAAAAGAAGGACTGACTTCCAGTTCCAGACAAGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6017 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1042 TRUE 387 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73058530:- chr16:72816784-73925770:- chr16:73092429:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72368722:- chr16:72270180-72698913:- chr16:72402621:- chr16:72965395,chr16:72965398 chr16:72410311,chr16:72410301 NA NA chr16:72999294,chr16:72999297 chr16:72444210,chr16:72444200 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 2 16 ENST00000641206.2 ENST00000624829.4 upstream downstream none GGAGAAGCAACCGC|ATTTTAAAGCACCTGATGGATTTGGAAAATATTTAATGAAGACAATGATGCTGACATCTCAAGTTAAAAG___GTTCTACAGAGAAGGCA...GAGACTATCATAGATATTCACAACGGCATCTCCCTAAAGGATTTGAAAGCTTTGCATCAACCAAAGGAAAAGCACCAGTGAGAGTCAAGATACAGTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6018 MTMR3::EPIC1 ENSG00000100330.16::ENSG00000224271.8 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 575 TRUE 1043 TRUE 388 MTMR3 ENSG00000100330.16 protein_coding + + chr22:29883169-30030868:+ chr22:29883359:+ chr22:30279158-30426857:+ chr22:30279348:+ EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:48013741:+ chr22:48026576-48418772:+ chr22:48409499:+ chr22:29930536,chr22:29930527 chr22:47878000,chr22:47877988 NA NA chr22:30326525,chr22:30326516 chr22:48273749,chr22:48273737 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 2 3 6 10 29 ENST00000333027.7 ENST00000651403.1 downstream upstream duplicates(3) GCCGCCATGTTGTTGTGGTTGTGAGAAGGCGGCGGCGGCGGCGGAGTAGCAGCCGGACGAGACGTCCCAGCGGCTCAGGCGCTGCCCAGCGCCGGCCCTGGCAGGGAGCCTGGTGGGGTGGCGGAGGGGGAGACTGTGCCGTGGAGGGCCTCGCCATGTCCTGCTGCCCG|GTCCTTTGGAAGATGAGGATGAAGCTCTTGTGAATGGAATTCGTGACCTTATAGAAGAAGCCCAAGAGAGCTGCCTTGTCCTTTTTACCACGTGAGGACACAGCAAGAAGGTGCCGTCTGTGAACCAGGAAGCAAGCTCTCACTAGATTTGGAATCTGCCGATGCCTCCGTCTTGGACTTCCCAGCCTCTGGGACA___GGGAAGGAGTGACAGCTTCCAAACTGTTGATCTGTCAGTGCTGAAACCAGCAGGTCCCTTCAGCGAGGGCCAAATGAG___CGGAACTCTCCAGGATACGTCTGATTTATATGATGCCCTCTCTGGGTCAGCAGCTTCAGTCATGAAcAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6019 MTMR3::EPIC1 ENSG00000100330.16::ENSG00000224271.8 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1043 TRUE 388 MTMR3 ENSG00000100330.16 protein_coding + + chr22:29883169-30030868:+ chr22:29883359:+ chr22:30279158-30426857:+ chr22:30279348:+ EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:47974172:+ chr22:48026576-48418772:+ chr22:48369921:+ chr22:29930536,chr22:29930527 chr22:47878000,chr22:47877988 NA NA chr22:30326525,chr22:30326516 chr22:48273749,chr22:48273737 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 0 0 8 10 3 ENST00000333027.7 ENST00000664761.1 downstream upstream duplicates(4),mismappers(1) TGTGGCCGCTGCCGCCATGTTGTTGTGGTTGTGAGAAGGCGGCGGCGGCGGCGGAGTAGCAGCCGGACGAGACGTCCCAGCGGCTCAGGCGCTGCCCAGCGCCGGCCCTGGCAGGGAGCCTGGTGGGGTGGCGGAGGGGGAGACTGTGCCGTGGAGGGCCTCGCCATGTCCTGCTGCCCG|AAATGACTGATGGGGAGAAAGATGCAGAGCACAGACTAATTCGCAGCTAATTCTTCTAAACAGTCATGACTGGCTAGACAAAATGTGGCAGATGCTTTTCATTTTATTTCCAAATTTGCAATGAAA...GAGAGTCGCGGTGGATAGGCTCTTTCTTCTGGCCCCTGACCTGTGCGATGACTCAACATGGCACAGGATGATGGAGTTAGAAAACCCCACGGGGACAGAAGACGCTGTAGACAGTCAGCTGGCGGGAAGGACTCGGACAACCCAATCGCACACCAAGATGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6020 SLC25A40::CD36 ENSG00000075303.13::ENSG00000135218.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A40 ENSG00000075303.13 protein_coding - - chr7:87833568-87876360:- chr7:87841633:- chr7:87462883-87505675:- chr7:87470948:- CD36 ENSG00000135218.19 protein_coding + - chr7:80369575-80679277:+ chr7:80417463:- chr7:79998891-80308593:+ chr7:80046779:- chr7:87839765,chr7:87839771 chr7:80418775,chr7:80418778 NA NA chr7:87469080,chr7:87469086 chr7:80048091,chr7:80048094 NA NA sense antisense unknown CDS/splice-site intron deletion/5'-5' high none Mitochondrial_carrier_protein(81%)| Mito_carr(67%)| 3 2 6 452 15 ENST00000429674.5 unknown upstream downstream duplicates(3),mismatches(1) GTGGAACTGCATCGATTTGTCAGCAAGcAAGTATCTGAAGATGGTTGGATTTCCCTTTGGAGGGGCTGGGCTCCTACTGTTCTTAGAGATGTACCTTTCTCAG___...CTTTACTTCAGGGGCATTGTCTGGTTCT___TTTGCTGCTGTTGCAACTTTACCATTTGATGTAGTAAAAACACAAAAGCAGACACAACTTTGGACATATGAAAGTCATAAAA|AACAACATTGAAGTTTCCTGATTACCAGTTCCCGGATCCGCACATCTCATCCTTCAGACATCGGTTCATTCTGTGTCCCCAGCTG...TACTGTgCCTTCTGCTGTCTCTTTAGGTTTGACTCTTGTATGGACAAAATAATGTAGGTATTAATAGCACACACAGACTCATCCTCCTACCTTCTCAAGGCTGTTTGCCATATCATTTTCCTCTGCTGAACTAAAAACAAAAGGAAGGCTAAATTTGGTATTCAGAAATTACTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6031 SNX31::KCNQ3 ENSG00000174226.9::ENSG00000184156.18 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX31 ENSG00000174226.9 protein_coding - - chr8:100572889-100663415:- chr8:100584111:- chr8:101585117-101675643:- chr8:101596339:- KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132321599:- chr8:133133108-133493342:- chr8:133333846:- chr8:100575121,chr8:100575126 chr8:132330878,chr8:132330880 NA NA chr8:101587349,chr8:101587354 chr8:133343125,chr8:133343127 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none PX_domain(100%),Sorting_Nexin_17_FERM_C-terminal_domain(100%)|Ankyrin-G_binding_motif_of_KCNQ2-3(100%),Ion_transport_protein(96%),KCNQ_voltage-gated_potassium_channel(100%) PX(100%),SNX17_FERM_C(100%)|Ion_trans(48%),Ion_trans_2(100%),KCNQC3-Ank-G_bd(100%),KCNQ_channel(100%) 1 0 2 20 2 ENST00000311812.7 ENST00000638588.1 upstream downstream duplicates(2) ATCGTTTTCCAGATGAGCAGGGTGAAGTGCTGGCAGGTCACTTTCCTT___GGAACTCTGCTGGATACGGATGGGCCCCAGAGAACTCTCAACCAGAACTTAGAGCTCAGATTTCAATACAGTGAGGATAGTTGCTGGCAGTGGTTTGTTATTTACACCAAACAG___GCTTTTTTGCTGAGTAGCTGCTTGAAAAAGATGATCTCAGAAAAGATGGTAAAGCTAGCTGCTGAGAATACAGAAATG|AGCCAACCAGGAAATGACCCAGTATGCTTGGCTACTTCTGAGAAGCATCCTTGTGTGTCTGTGTGGG IVFQMSRVKCWQVTFLGTLLDTDGPQRTLNQNLELRFQYSEDSCWQWFVIYTKQAFLLSSCLKKMISEKMVKLAAENTEM|sqpgndpvclatsekhpcvsvw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6035 ZNF773::ENSG00000268107 ENSG00000152439.13::ENSG00000268107.6 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF773 ENSG00000152439.13 protein_coding + + chr19:57499915-57518404:+ chr19:57500113:+ chr19:58011283-58029772:+ chr19:58011481:+ ENSG00000268107 ENSG00000268107.6 protein_coding + - chr19:57487718-57517559:+ chr19:57496333:- chr19:57999086-58028927:+ chr19:58007701:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none none KRAB(61%)| 0 16 60 166 135 ENST00000593916.5 unknown downstream downstream duplicates(39),mismappers(47),mismatches(62),multimappers(1) GCCGGAAGCTGGTTGTTCGCTGCGGCGACCAGCTCCGGAAAGCGCGGTGGGGACGCGCTGTGTTCTCGCAGCTCAGAGGCGGGTCTGAGGCTCGGTGGCGGCGCCCAGGGTGGCCCGGGCCCTTTCCTCGGTCGTTGTCTCACCGCCACAGGCTCCGATGGCGGCGGCCACGCTGAGGGACCCCGCTCAG|GAATGACCCTCAGCTGATGCCATCAAGAAAAAGGAATCTCAGTCCTACAACCACGAAGAACTTAAATATGCTAACAACTGAAATAAGCAAGAAACAGATCCTCCCTGAGACTCTAGAAAGGAACATAATCATGCCAACACTTTGATTTTAACCCAGTGAGACTTCTGTTATATTTGTGTTGTTTAAACCATAAGTTTGTGGTGATTTGTCA MAAATLRDPAQ|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6036 CEP76::PSMG2 ENSG00000101624.11::ENSG00000128789.22 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP76 ENSG00000101624.11 protein_coding - - chr18:12661833-12702777:- chr18:12695254:- chr18:12661832-12702776:- chr18:12695253:- PSMG2 ENSG00000128789.22 protein_coding + + chr18:12658043-12728945:+ chr18:12724499:+ chr18:12658042-12728944:+ chr18:12724498:+ chr18:12694673,chr18:12694677 chr18:12723717,chr18:12723713 NA NA chr18:12694672,chr18:12694676 chr18:12723716,chr18:12723712 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site inversion medium none CEP76_C2_domain(100%)|PAC2_family(15%) CEP76-C2(100%)|PAC2(0%) 2 4 5 45 1001 ENST00000262127.7 ENST00000585331.6 upstream upstream duplicates(1) ATGGGT___GCACAGAATCAAAAGTTTCTGTGGGAATTTTAAATATAAAACTTGAAATGTATCCACCACTCAATCAAACGTTATCTCAAGAAGTAGTGAACACACAG|CTGTTCTAAAGAAATCCAAATGGCAGTTCTGCTGAAATTTGTTTCAGAAGGGGACAACATCCCAGATGCATTAGGTCTTGTTGAGTATCTTAATGAGTGGCTTCAGATACTCAAACCACTT___AGCGATGACCCCACAGTATCTGCCTCACGGTGGAAAATACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6037 RAD17::MARVELD2 ENSG00000152942.19::ENSG00000152939.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD17 ENSG00000152942.19 protein_coding + + chr5:69369293-69414801:+ chr5:69374711:+ chr5:68665120-68710628:+ chr5:68670538:+ MARVELD2 ENSG00000152939.17 protein_coding + + chr5:69415065-69444330:+ chr5:69432527:+ chr5:68710892-68740157:+ chr5:68728354:+ chr5:69377434,chr5:69377434 chr5:69425260,chr5:69425252 NA NA chr5:68673261,chr5:68673261 chr5:68721087,chr5:68721079 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Rad17_P-loop_domain(24%)|Occludin_homology_domain(100%) AAA(87%),AAA_17(100%),AAA_18(100%),Rad17(17%),RuvB_N(8%)|Occludin_ELL(100%) 3 5 17 65 68 ENST00000361732.6 ENST00000325631.10 downstream upstream duplicates(2) GGAAATCTATCTTCCTTAGAACAGATTTATGGTTTAGAAAATTCAAAAGAATATCTGTCTGAAAATGAACCATGGGTGGATAAATATAAACCAGAAACTCAG___CATGAACTTGCTGTGCATAAAAAGAAAATTGAAGAAGTCGAAACCTGGTTAAAAGCTCAAGTTTTAGAAAGGCAACCAAAACAG|TGTGAAATGGCCACCAGTGGTGACAGACAAAGAGACTCAGAAGTTAATTTCAAGGAACTGAGAACAGCAAAAATGAAACCTGAACTACTGAGTGGACACATCCCCCCAGGCCACATTCCTAAACCTATCGTGATGCCCGACTATGTGGC___AAAATACCCTGTGATTCAGACAGATGATGAGCGAGAACGCTATAAAGCTGTGTTCCAAGACCAGTTTTCAGAGTACAAAGAGCTGTCTGCAGAAGTTCAGGCTGTCCTGAGGAAGTTTGATGAGCTGGATGCAGTGATGAGCAGATTGCCA GNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQ|CEMATSGDRQRDSEVNFKELRTAKMKPELLSGHIPPGHIPKPIVMPDYVAKYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD17 checkpoint clamp loader component 2 lymphoma, colon cancer epithelial, leukaemia_lymphoma TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 6053 SMARCA4::ZSCAN5A ENSG00000127616.22::ENSG00000131848.10 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1045 TRUE 389 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ ZSCAN5A ENSG00000131848.10 protein_coding - - chr19:56219670-56368383:- chr19:56325652:- chr19:56731039-56879752:- chr19:56837021:- chr19:11051828,chr19:11051827 chr19:56328738,chr19:56328739 NA NA chr19:11162504,chr19:11162503 chr19:56840107,chr19:56840108 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|SCAN_domain(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|SCAN(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 2 1 0 794 27 ENST00000644737.1 unknown downstream downstream none CGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|TGTCTACTTCTGGTGATGACAGAGTGACTGGTGCTAGACTGGACTTCCTGATACAGAAAACAACAAACCTGGATGCATTCT...CGTCCATGCACAGAAAATGAGAGGTCTCATGAAGCTTCAACGCAGTCTGGGACCCTAGTTCTTTTTGTAAGGAGTTGTTTGACATGAGGCCCAGTCACAAG DESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDs|vyfw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6054 SMARCA4::ZSCAN5A ENSG00000127616.22::ENSG00000131848.10 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1045 TRUE 389 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ ZSCAN5A ENSG00000131848.10 protein_coding - - chr19:56219670-56368383:- chr19:56316268:- chr19:56731039-56879752:- chr19:56827637:- chr19:11051828,chr19:11051827 chr19:56328738,chr19:56328739 NA NA chr19:11162504,chr19:11162503 chr19:56840107,chr19:56840108 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)|SCAN_domain(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%) BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)|SCAN(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 0 794 6 ENST00000644737.1 ENST00000587340.5 downstream downstream none TCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|ATGGTGCAATGCTGGGCCACAGAGCTTG...CCATTTTCACGTGCGGAGTCTCAGGGCTCAGTAAAGAACCATGATTGACGGAGGTCACACAGCAACTGGTATGACAGGGACAGGTTTCCGGAATTCCAGTG SPNPPNLTKKMKKIVDAVIKYKDr|wcnagpqs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6055 SMARCA4::ZSCAN5A-AS1 ENSG00000127616.22::ENSG00000267549.6 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ ZSCAN5A-AS1 ENSG00000267549.6 lncRNA + - chr19:56314703-56365316:+ chr19:56325652:- chr19:56826072-56876685:+ chr19:56837021:- chr19:11051828,chr19:11051827 chr19:56328738,chr19:56328739 NA NA chr19:11162504,chr19:11162503 chr19:56840107,chr19:56840108 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none BRK_domain(100%),Bromodomain(2%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),QLQ(100%),SNF2-related_domain(100%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)| BRK(100%),Bromodomain(0%),HSA(100%),Helicase_C(100%),QLQ(100%),ResIII(100%),SNF2-rel_dom(100%),SnAC(100%)| 2 1 0 794 27 ENST00000644737.1 unknown downstream downstream none CGACGAGAGCAAGAAGCAGAAGAAGCGCGGGCGGCCGCCTGCCGAGAAACTCTCCCCTAACCCACCCAACCTCACCAAGAAGATGAAGAAGATTGTGGATGCCGTGATCAAGTACAAGGACAG|TGTCTACTTCTGGTGATGACAGAGTGACTGGTGCTAGACTGGACTTCCTGATACAGAAAACAACAAACCTGGATGCATTCT...CGTCCATGCACAGAAAATGAGAGGTCTCATGAAGCTTCAACGCAGTCTGGGACCCTAGTTCTTTTTGTAAGGAGTTGTTTGACATGAGGCCCAGTCACAAG DESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDs|vyfw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6061 C5AR1::DHX34 ENSG00000197405.8::ENSG00000134815.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1047 FALSE NA C5AR1 ENSG00000197405.8 protein_coding + + chr19:47290023-47322066:+ chr19:47292173:+ chr19:47793280-47825323:+ chr19:47795430:+ DHX34 ENSG00000134815.19 protein_coding + + chr19:47349315-47382704:+ chr19:47381980:+ chr19:47852572-47885961:+ chr19:47885237:+ chr19:47295302,chr19:47295299 chr19:47381218,chr19:47381212 NA NA chr19:47798559,chr19:47798556 chr19:47884475,chr19:47884469 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none none none 1 0 3 42 77 ENST00000595501.5 ENST00000328771.9 downstream upstream duplicates(1),mismappers(1),mismatches(1) TTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTgGAGTGCAGTTGCGCGATCTTGGCTCACTGCGAGTTCCACCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGAACTACAGGCGCCCACTACCACGCCCAG|GGGCTGAGGAAGCTGCCCTCGAAACCCTCCAGAAGACATCTGTCCTGCAGAGGCCCTACCACTGCGAGGCCTGCGGGAAGGACTTCCTCTTTACACCCACAGAGGTGCTGCGCCACCGGAAGCAGCACGTGTGAGCTGGGCCAGGAGCCCTGCCCACCTCCGTGCAGCTGACCTGCCCTCCAGCCCAGGACTAGGGGCAGGACTCTTGCCTGAACCCCCAGCCTGGGCTTAGCCCTGTGGTCCTGTCCCAGTGCAGAGGGCCTGGAGCACGGATTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6067 ENTPD8::EXD3 ENSG00000188833.10::ENSG00000187609.16 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1049 TRUE 390 ENTPD8 ENSG00000188833.10 protein_coding - - chr9:137434364-137441816:- chr9:137437967:- chr9:140328816-140336268:- chr9:140332419:- EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137397516:- chr9:140201348-140317663:- chr9:140291968:- chr9:137437783,chr9:137437786 chr9:137397744,chr9:137397744 NA NA chr9:140332235,chr9:140332238 chr9:140292196,chr9:140292196 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through low none GDA1/CD39_(nucleoside_phosphatase)_family(10%)|3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(100%) GDA1_CD39(7%)|DNA_pol_A_exo1(100%),Mut7-C(100%) 0 2 6 23 6 ENST00000344119.6 ENST00000340951.9 upstream downstream mismappers(1) GGTCTTCTTGGCCCTGCTGGGGGCCTCGGGGGTCTCAGGCCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG___TTTGGGATCGTGTTTGATGCGGGCTCCTCCCACACGTCCCTCTTCCTGTATCAGTGGCcGGCGAACAAGGAGAATGGCACGGGTGTGGTCAGCCAGGCCCTGGCCTGCCAGGTGGAAG|GTCTTGTGATTTTTATTACGTGCTGAGTTTCGTGAATTATCCATTGTGGAAACTCTGGATTTAG___TGGGAGAGCCACAGTCCCTCCCCGACGGTGGAGCAGGAGTCTGGAGCAGCCTGCGTGAGAAAGGAAAAGGCATCCTAACCTCCATGTGACGCGGCTGGGAACGGCC...TCCTCGGCCCGGCCCTGAGGATGGACCCAGGAGATCCCGCTGGTGACCCTGCCGCTGGCGAGCGCCACCGCATGGGTGAGTCTGAGCCTGATGGTGCCGAG VFLALLGASGVSGLTALILLLVEATSVLLPTDIKFGIVFDAGSSHTSLFLYQWpANKENGTGVVSQALACQVE|glvifitc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6068 ENTPD8::EXD3 ENSG00000188833.10::ENSG00000187609.16 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1049 TRUE 390 ENTPD8 ENSG00000188833.10 protein_coding - - chr9:137434364-137441816:- chr9:137441286:- chr9:140328816-140336268:- chr9:140335738:- EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137395404:- chr9:140201348-140317663:- chr9:140289856:- chr9:137437783,chr9:137437786 chr9:137397744,chr9:137397744 NA NA chr9:140332235,chr9:140332238 chr9:140292196,chr9:140292196 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through low none |3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(100%) |DNA_pol_A_exo1(100%),Mut7-C(100%) 0 2 0 6 194 ENST00000461823.1 ENST00000465160.2 upstream downstream none GCACAGCTTCCTCCTTGCCGCTCCGGGAAGTGGGCAGCCAGCCCAG|ATCCTCGTTCCTAGCTGCCTGCCAGCGTCCTCGGCCCGGCCCTGAGGATGGACCCAGGAGATCCCGCTGGTGACCCT...CCTCGGTGCCCCCTGGAACAGCCTCAGCACCCCCTGGAACACTAATGGCCCTCCCTGGAACAGATACGGCCCCCCGCCAGAACAGACATGGTGCCCGCTGGAACACTAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6069 ENTPD8::EXD3 ENSG00000188833.10::ENSG00000187609.16 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1049 TRUE 390 ENTPD8 ENSG00000188833.10 protein_coding - - chr9:137434364-137441816:- chr9:137438160:- chr9:140328816-140336268:- chr9:140332612:- EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137395404:- chr9:140201348-140317663:- chr9:140289856:- chr9:137437783,chr9:137437786 chr9:137397744,chr9:137397744 NA NA chr9:140332235,chr9:140332238 chr9:140292196,chr9:140292196 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none GDA1/CD39_(nucleoside_phosphatase)_family(1%)|3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(100%) GDA1_CD39(0%)|DNA_pol_A_exo1(100%),Mut7-C(100%) 0 1 0 34 194 ENST00000344119.6 ENST00000465160.2 upstream downstream none CCTCACGGCACTCATTCTCCTCCTGGTGGAGGCCACCAGCGTGCTCCTGCCCACAGACATCAAG|ATCCTCGTTCCTAGCTGCCTGCCAGCGTCCTCGGCCC...CCTAAGCAGAGTGGGATGTTTTCAAAGTGCAACACCCCAGCTAGCAGGGCCCCTGGAACAGCCTCGGCGCCCCCTGGAACACTAATGGCCCTCCCTGGAAC LTALILLLVEATSVLLPTDIK|ilvpsclpassa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6074 ZNF211::ZNF551 ENSG00000121417.14::ENSG00000204519.11 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF211 ENSG00000121417.14 protein_coding + + chr19:57630395-57644041:+ chr19:57634061:+ chr19:58141763-58155409:+ chr19:58145429:+ ZNF551 ENSG00000204519.11 protein_coding + + chr19:57681969-57717301:+ chr19:57717167:+ chr19:58193337-58228669:+ chr19:58228535:+ chr19:57634290,chr19:57634291 chr19:57714411,chr19:57714409 NA NA chr19:58145658,chr19:58145659 chr19:58225779,chr19:58225777 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |KRAB_box(1%) KRAB(34%)|KRAB(0%) 5 0 1 19 10 ENST00000240731.5 ENST00000596085.1 downstream upstream duplicates(2) TGGCGTCTTCGCgGCGGTCATTTTGGCTGCCCTCCCGGAGGTCCGTTCTGTCTGTCAGCCGCTTTGGTACGCTGCATCGGGATCGAAGTGACGGACCGTGAAGGCGCGAGAGTCAGGTCTGAGGGTCGGGGGCAGA...CTTCG___GTTCCCATAGCTACAGAGGTGCTTTTCAAACTTACACAG|ATCAAGCCACCAATATCTGAGAGAGAAATGCTGGCTTCAGGAGAGCTCAAGTCAGAGGATCCCAGCAGGGATTTTATACCCTTCTGGGGTAACACAGTT SVPIATEVLFKLTQ|ikppiseremlasgelksedpsrdfipfwgnt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6075 SMYD3::KIF26B ENSG00000185420.19::ENSG00000162849.16 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245764041:- chr1:245912644-246670614:- chr1:245927343:- KIF26B ENSG00000162849.16 protein_coding + - chr1:245154985-245709432:+ chr1:245582257:- chr1:245318287-245872734:+ chr1:245745559:- chr1:245758476,chr1:245758485 chr1:245588550,chr1:245588556 NA NA chr1:245921778,chr1:245921787 chr1:245751852,chr1:245751858 NA NA sense antisense unknown CDS/splice-site intron deletion/read-through/5'-5' low none MYND_finger(100%),SET_domain(100%)| SET(100%),zf-MYND(100%)| 1 1 4 47 7 ENST00000470510.5 unknown upstream downstream duplicates(1) GGACCATGGAGCCATACAG___TTGAAGAAGACCAGGAAAGAATCTTCTTTTAAAAAACTGAGCTCTATCTGTCCTGATTCCTGGTGCTGCTTCAG___GATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTG|AGTGAGGAACACAATGACCCCCTTGACGGGCACGTGGTAAATTCACAGCTCGTGTAGCTCTCGCTGAAGAGGACCTGCTCATCATTCAGCAAACACAGACATGAAaTTCAGCATCGGGCTCCCTGGTGTGTCTGACGGATGGGACTTCCAAAGGCTGTAAAGGTCCTTGCTCAAGTCTCAGCAGTTGCCTGGATGTAGCAGTTACACCAAGTACTTGAGTACtAGTAAAATGGCAGTTACTCCACACTGTTCACTTGGAGAATAACTGCCACTTCATGCTTATTGCTTATTTATTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6077 UBR5::ZFPM2 ENSG00000104517.13::ENSG00000169946.14 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBR5 ENSG00000104517.13 protein_coding - - chr8:102252273-102412759:- chr8:102360069:- chr8:103264501-103424987:- chr8:103372297:- ZFPM2 ENSG00000169946.14 protein_coding + - chr8:104590733-105804539:+ chr8:105661754:- chr8:105602961-106816767:+ chr8:106673982:- chr8:102355963,chr8:102355965 chr8:105666575,chr8:105666575 NA NA chr8:103368191,chr8:103368193 chr8:106678803,chr8:106678803 NA NA sense antisense unknown exon intron duplication/5'-5' low none none none 0 0 5 91 17 ENST00000522327.1 unknown upstream downstream none GCAGGATTGGTTTTTCAGTACAGCCAGACAGATTGGAATTGGGTAAACCTGATAATAATGATGG___GTCAAAGTTGAACAGCAACTCGGGGGCAGGGAGGACGTCAAGGCCTGGTAGGACAAGCGACTCTCCATGGTTTCTCTCAGGTTCTGAGACTCTAGGCAGGCTGGCAGGCAACACCTTAGGGT...|...TTAACATgTCAGTCTTTATGGTGCAAGTCTCCCGTTGACACAACTTTAGTCCAGCCATGG[a]AAAAAAAAAAATCACAGAGCCCCACAGGGATTAAAAGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ubiquitin protein ligase E3 component n-recognin 5 1 Yes mantle cell lymphoma, gastric, colorectal leukaemia_lymphoma, epithelial oncogene frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6078 UBR5::ZFPM2-AS1 ENSG00000104517.13::ENSG00000251003.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBR5 ENSG00000104517.13 protein_coding - - chr8:102252273-102412759:- chr8:102360069:- chr8:103264501-103424987:- chr8:103372297:- ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105661754:- chr8:106558317-107072752:- chr8:106673982:- chr8:102355963,chr8:102355965 chr8:105666575,chr8:105666575 NA NA chr8:103368191,chr8:103368193 chr8:106678803,chr8:106678803 NA NA sense sense unknown exon intron duplication low none none none 0 0 5 91 17 ENST00000522327.1 unknown upstream downstream none GCAGGATTGGTTTTTCAGTACAGCCAGACAGATTGGAATTGGGTAAACCTGATAATAATGATGG___GTCAAAGTTGAACAGCAACTCGGGGGCAGGGAGGACGTCAAGGCCTGGTAGGACAAGCGACTCTCCATGGTTTCTCTCAGGTTCTGAGACTCTAGGCAGGCTGGCAGGCAACACCTTAGGGT...|...TTAACATgTCAGTCTTTATGGTGCAAGTCTCCCGTTGACACAACTTTAGTCCAGCCATGG[a]AAAAAAAAAAATCACAGAGCCCCACAGGGATTAAAAGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ubiquitin protein ligase E3 component n-recognin 5 1 Yes mantle cell lymphoma, gastric, colorectal leukaemia_lymphoma, epithelial oncogene frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 6079 GPHN::GARIN2 ENSG00000171723.16::ENSG00000172717.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:66916069:+ chr14:66974125-67648520:+ chr14:67382786:+ GARIN2 ENSG00000172717.17 protein_coding + + chr14:67189393-67228550:+ chr14:67198135:+ chr14:67656110-67695267:+ chr14:67664852:+ chr14:66916759,chr14:66916757 chr14:67197916,chr14:67197911 NA NA chr14:67383476,chr14:67383474 chr14:67664633,chr14:67664628 NA NA sense sense in-frame CDS/splice-site intron deletion/read-through low none Probable_molybdopterin_binding_domain(48%)|Protein_of_unknown_function_(DUF3699)_(100%) MoCF_biosynth(90%)|DUF3699(100%) 1 0 4 36 6 ENST00000315266.9 ENST00000612183.4 downstream upstream none CCTGGCAATGCTGATGGGATCACTTAATGTTACACCTCTGGGCATGCTCTCTAG___GCCTGTATGTGGAATCAGAGGGAAAACGCTCATAATTAACCTGCCAGGTAGCAAGAAAGGATCTCAG|t|TTTTTTTATGTTTATGTGCAAGCGCAATGAAGAAGAACACCAGCAAGACTACCATGAGGATCAATAAGCAAGATGCTCTCTGCACCCCACACTCCCATGATCCGAGAGATCTTCAAAATATGTTGGATGGAGGAGAGTATGCCCCTTTTGTATCTCCTCCCATGTTAGAGAGCAATTTTATCCAGG LAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQ|fflclcasaMKKNTSKTTMRINKQDALCTPHSHDPRDLQNMLDGGEYAPFVSPPMLESNFIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6103 DNAAF10::ZFPM2 ENSG00000243667.7::ENSG00000169946.14 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAAF10 ENSG00000243667.7 protein_coding - - chr2:68122936-68157549:- chr2:68144585:- chr2:68350068-68384681:- chr2:68371717:- ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105788718:+ chr8:105602961-106816767:+ chr8:106800946:+ chr2:68141535,chr2:68141539 chr8:105759656,chr8:105759652 NA NA chr2:68368667,chr2:68368671 chr8:106771884,chr8:106771880 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none WD_domain__G-beta_repeat(49%)|Zinc-finger_of_C2H2_type(100%) WD40(3%)|zf-met(100%) 1 0 0 103 8 ENST00000295121.11 ENST00000407775.7 upstream upstream none GGCAACTTCGCACGGGGCACCGGCGTCATTCAGCTGTACGAGATCCAGCACGGGGACCTGAAGCTGCTTCGGGAG___ATTGAAAAGGCCAAACCTATTAAATG...TGGCATAGGTGGACTAGGAATTGGAGAAGGAGCACCTGAAATTGTGACTGGCAGCCGAGATG|GGGGTCAGCTTTGGTGTACAACTACGAAGGCCATCTCTG GIGGLGIGEGAPEIVTGSRD|gGQLWCTTTKAIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6104 DDX46::SNX25 ENSG00000145833.16::ENSG00000109762.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DDX46 ENSG00000145833.16 protein_coding + + chr5:134758771-134855133:+ chr5:134828746:+ chr5:134094461-134190823:+ chr5:134164436:+ SNX25 ENSG00000109762.17 protein_coding + + chr4:185204237-185370185:+ chr4:185264438:+ chr4:186125391-186291339:+ chr4:186185592:+ chr5:134850225,chr5:134850225 chr4:185263836,chr4:185263833 NA NA chr5:134185915,chr5:134185915 chr4:186184990,chr4:186184987 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site translocation low none DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%)|PXA_domain(48%),PX_domain(100%),Regulator_of_G_protein_signaling_domain(100%),Sorting_nexin_C_terminal(100%) DEAD(100%),Helicase_C(100%)|Nexin_C(100%),PX(100%),PXA(13%),RGS(100%) 1 0 0 216 96 ENST00000452510.7 ENST00000504273.5 downstream upstream duplicates(1) AGAGAGACAGGATGGTGGACAGAATGAATCTTTTAAGAGATATGAAGAAGAATTAGAGATCAATGACTTCCCACAG___ACTGCTAGGTGGAAAGTTACCTCTA...ATACAAAGTCTTATAGACATCCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGAT|ACATGAAGAACAGCCAAGACCTTTTGTGTTGCACGCATGCTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6105 ENSG00000273398::ZFPM2 ENSG00000273398.6::ENSG00000169946.14 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000273398 ENSG00000273398.6 protein_coding - - chr2:68131238-68261230:- chr2:68144585:- chr2:68358370-68488362:- chr2:68371717:- ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105788718:+ chr8:105602961-106816767:+ chr8:106800946:+ chr2:68141535,chr2:68141539 chr8:105759656,chr8:105759652 NA NA chr2:68368667,chr2:68368671 chr8:106771884,chr8:106771880 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation low none |Zinc-finger_of_C2H2_type(100%) EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),WD40(3%)|zf-met(100%) 1 0 0 103 8 ENST00000406334.3 ENST00000407775.7 upstream upstream none GGCAACTTCGCACGGGGCACCGGCGTCATTCAGCTGTACGAGATCCAGCACGGGGACCTGAAGCTGCTTCGGGAG___ATTGAAAAGGCCAAACCTATTAAATG...TGGCATAGGTGGACTAGGAATTGGAGAAGGAGCACCTGAAATTGTGACTGGCAGCCGAGATG|GGGGTCAGCTTTGGTGTACAACTACGAAGGCCATCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6106 ANAPC11::ASPSCR1 ENSG00000141552.18::ENSG00000169696.16 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1055 TRUE 391 ANAPC11 ENSG00000141552.18 protein_coding + + chr17:81890790-81900991:+ chr17:81894586:+ chr17:79848666-79858867:+ chr17:79852462:+ ASPSCR1 ENSG00000169696.16 protein_coding + + chr17:81976807-82017406:+ chr17:82009037:+ chr17:79934683-79975282:+ chr17:79966913:+ chr17:81899302,chr17:81899298 chr17:82003929,chr17:82003926 NA NA chr17:79857178,chr17:79857174 chr17:79961805,chr17:79961802 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Anaphase-promoting_complex_subunit_11_RING-H2_finger(35%)|UBX_domain(100%) zf-ANAPC11(1%),zf-rbx1(0%)|UBX(100%) 36 24 39 1296 207 ENST00000344877.10 ENST00000306729.11 downstream upstream duplicates(4),low_entropy(4),mismappers(1),mismatches(27),multimappers(1) CGCCGGCGCTGCCAACGGAAGGGCGGGTAGGGCG___AGACGGAGTTTCGTCATGTTGGCCAGGCCCATTTGAGATCTTTGAAGATATCCTCAACGTGAG___GCTCTGCTGCCATGAAGGTGAAGATTAAGTGCTGGAACGGCGTGGCCACTTGGCTCTGGGTGGCCAACGATGAGAACTGTGGCATCTGCAGGATGGCATTTAACGGATGCTGCCCTGACT|CCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCCGACCTGGAGGAGCGGCTGCAGGCCTGGCCAGCGGAGCTGCCTGATGAGTTCTTTGAGCTGACGGTGGACGACGTGAGAAGACGCTTGGCCCAGCTCAAGAGTGAGCG___GAAGCGCCTGGAAGAAGCCCCCTTGGTGACCAAGGCCTTCAGGGAGGCGCAGATAAAGGAGAAGCTG MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPD|srgpgargpgaggvpprpggaaaglasgaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE alveolar soft part sarcoma chromosome region, candidate 1 1 alveolar soft part sarcoma mesenchymal fusion translocation 6107 ANAPC11::ASPSCR1 ENSG00000141552.18::ENSG00000169696.16 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1055 TRUE 391 ANAPC11 ENSG00000141552.18 protein_coding + + chr17:81890790-81900991:+ chr17:81891841:+ chr17:79848666-79858867:+ chr17:79849717:+ ASPSCR1 ENSG00000169696.16 protein_coding + + chr17:81976807-82017406:+ chr17:82009037:+ chr17:79934683-79975282:+ chr17:79966913:+ chr17:81899302,chr17:81899298 chr17:82003929,chr17:82003926 NA NA chr17:79857178,chr17:79857174 chr17:79961805,chr17:79961802 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |UBX_domain(100%) |UBX(100%) 0 1 0 1422 207 ENST00000612413.4 ENST00000306729.11 downstream upstream mismatches(1) GCGGGCGCTGTTGAGGGAGaCGGGCCGgGACTGTGGTCGcTTcTATACCTTCCCcCGCGGtCGCCGGCGCTGCCAACGGAAGGGCGGGTAGGGCG|CCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCCGcCCTGGAGGAGgGGCTGgAG...GCGCCTGGAAGAAGCCCCCTTGGTGACCAAGGCCTTCAGGGAGGCGCAGATAAAGGAGAAGCTGGAGCGCTACCCAAAG___GTGGCTCTGAGGGTCCTGTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE alveolar soft part sarcoma chromosome region, candidate 1 1 alveolar soft part sarcoma mesenchymal fusion translocation 6108 ANAPC11::ASPSCR1 ENSG00000141552.18::ENSG00000169696.16 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1055 TRUE 391 ANAPC11 ENSG00000141552.18 protein_coding + + chr17:81890790-81900991:+ chr17:81894624:+ chr17:79848666-79858867:+ chr17:79852500:+ ASPSCR1 ENSG00000169696.16 protein_coding + + chr17:81976807-82017406:+ chr17:82009037:+ chr17:79934683-79975282:+ chr17:79966913:+ chr17:81899302,chr17:81899298 chr17:82003929,chr17:82003926 NA NA chr17:79857178,chr17:79857174 chr17:79961805,chr17:79961802 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Anaphase-promoting_complex_subunit_11_RING-H2_finger(39%)|UBX_domain(100%) zf-ANAPC11(2%),zf-rbx1(1%)|UBX(100%) 0 0 0 40 207 ENST00000612413.4 ENST00000583503.5 downstream upstream mismatches(1) GGAACGGCGTGGCCACTTGGCTCTGGGTGGCCAACGATGAGAACTGTGGCATCTGCAGGATGGCATTTAACGGATGCTGCCCTGACTGTGAGTGTCCCCTCCATGCTGTCTGAGCGGCCCCGACT|CCCGTGGACCGGG MRTVASAGWHLTDAALTVSVPSMLSERPRl|PWT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE alveolar soft part sarcoma chromosome region, candidate 1 1 alveolar soft part sarcoma mesenchymal fusion translocation 6109 C1orf159::PRKCZ ENSG00000131591.18::ENSG00000067606.17 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA C1orf159 ENSG00000131591.18 protein_coding - - chr1:1081818-1116361:- chr1:1090353:- chr1:1017198-1051741:- chr1:1025733:- PRKCZ ENSG00000067606.17 protein_coding + + chr1:2050411-2185395:+ chr1:2169518:+ chr1:1981850-2116834:+ chr1:2100957:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4501)(14%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(72%) DUF4501(13%)|PK_Tyr_Ser-Thr(23%),Pkinase(23%),Pkinase_C(100%) 25 23 33 229 512 ENST00000379325.7 ENST00000378567.8 upstream upstream duplicates(3),mismatches(5),multimappers(1) GCCGGG___GACTGGGCCGGGGTCTGCAGGGCTCAGCTGAGCCCATGAGCTCCCAGAGCTAACCCCTGAACACCCAGGCGGGCAAAGGGCTGATGTCGGTAGTCCCCATCCTGGAGGGGCAG___GCTCTGCGCATCTGCTCCTGGCATGGCGCTGCGGCACCTCGCCCTCCTGGCTGGCCTTCTCGTGGGAGTCGCCAGCAAGTCCATGGAGAACACG___GCCCAGCTGCCCGAGTGCTGTGTGGATGTGGTGGGCGTCAACGCCAGCTGCCCAGGCGCAAGTCTGTGTGGTCCAG|GTTGTTCCTGGTCATTGAGTACGTCAACGGCGGGGACCTGATGTTCCACATGCAGAGGCAGAGGAAGCTCCCTGAGGAGCACGCCAG___GTTCTACGCGGCCGAGATCTGCATCGCCCTCAACTTCCTGCACGAGAGGGGGATCATCTACAGGGACCTGA MALRHLALLAGLLVGVASKSMENTAQLPECCVDVVGVNASCPGASLCGP|gcswslststagt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C zeta type AGC PKC PKCi Q05513 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6112 TUBGCP6::MAPK12 ENSG00000128159.12::ENSG00000188130.14 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 578 TRUE 1056 FALSE NA TUBGCP6 ENSG00000128159.12 protein_coding - - chr22:50217689-50245023:- chr22:50218488:- chr22:50656118-50683452:- chr22:50656917:- MAPK12 ENSG00000188130.14 protein_coding - - chr22:50245450-50261716:- chr22:50258301:- chr22:50683879-50700145:- chr22:50696730:- chr22:50218187,chr22:50218190 chr22:50260188,chr22:50260188 NA NA chr22:50656616,chr22:50656619 chr22:50698617,chr22:50698617 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Gamma_tubulin_complex_component_C-terminal(45%),Gamma_tubulin_complex_component_N-terminal(100%)|Protein_kinase_domain(79%) GCP6_N(100%),GCP_C_terminal(47%),GCP_N_terminal(100%)|ABC1(100%),Hist_deacetyl(100%),PK_Tyr_Ser-Thr(45%),Pkinase(49%) 10 7 10 614 274 ENST00000248846.10 ENST00000622558.4 upstream downstream mismatches(3) CGGATGTGCTGAGCTGCCTGGAGCTCAGGTACAAG___GTGGACTGGCCTCTCAACATTGTCATCACCGAGGGCTGCcTGAGCAAGTACAGCGGCGTCTTCTCCTTCCTGCTGCAGCTGAAtCTCATGATGTGGGCGCTCAAGGACGTCTGCTTCCACCTCAAGCGCACAG|GTGATCGGGCTGCTGGACGTATTCACTCCTGATGAGACCCTGGATGACTTCAtGGACTT___TTACCTGGTGATGCCGTTCATGGGCACCGACCTGGGCAAGCTCATGAAACATGAGAAGCTAGGCGAGGACCGGATCCAGTTCCTCGTGTACCAGATGCTGAAGGG DVLSCLELRYKVDWPLNIVITEGClSKYSGVFSFLLQLnLMMWALKDVCFHLKRT|gdraagrihs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mitogen-activated protein kinase 12 CMGC MAPK p38 P53778 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6113 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 579 TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12927803:+ chr12:13080646-13137579:+ chr12:13080737:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12808858:+ chr12:12878851-12982909:+ chr12:12961792:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense unknown exon/splice-site intron duplication high none none |DEAD(100%),Helicase_C(100%),ResIII(100%) 1 22 1 129 74 ENST00000542078.2 ENST00000534843.1 downstream upstream mismatches(4) AGCCTACACCAAGGGAAGAGTCAGGGGAGAAGGAACACAAGACTCCGGAAGCATGCCAGCGTATAAAACC|AAAAGTCTGTGTGGCTGCTTTTGAAGAAGAAAGCTGCTTTCGATTAT___TGACGGACACCAGATTGCC...___ACCCACTTCCGGAGACCTCACACAAGATGGCGGCACCCGAGGAACACGATTCTCCGACCGAAGCGTCCCAGCCGATTGTGGAAGAGGAGGAAACTAAAACATTTAAAGACCTG___GGTGTGACAGATGTGTTGTGTGAAGCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6114 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 580 TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12927803:+ chr12:13080646-13137579:+ chr12:13080737:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12812261:+ chr12:12878851-12982909:+ chr12:12965195:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication high none none |DEAD(100%),Helicase_C(100%),ResIII(100%) 1 21 0 129 85 ENST00000542078.2 ENST00000588943.1 downstream upstream mismatches(1) GCCTACACCAAGGGAAGAGTCAGGGGAGAAGGAACACAAGACTCCGGAAGCATGCCAGCGTATAAAACC|TGACGGACACCAGATTGCCCCCAACTTCCCATCCTCAGGAATAAAACTGCAACGAGCACCCTGCGCAGTGTGAGACCCAAGTGACAGGCCACAGGAGGGCACTCGCTGGCCATGGGGCATGCAACATACAGCTCTGAATTTGCTGCTTTCCAGAATAGCCTTAGTAGCTTCACAGTCTTGGTACTTGGAATTCTCTCACTCTGGAATGATTATCTCCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6115 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12947238:+ chr12:13080646-13137579:+ chr12:13100172:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12812261:+ chr12:12878851-12982909:+ chr12:12965195:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication high none none |DEAD(100%),Helicase_C(100%),ResIII(100%) 1 1 2 19 85 ENST00000540198.1 ENST00000534843.1 downstream upstream mismatches(2) GGAACACAAGACTCCGGAAGCATGCCAGgGcATAAAACC___GTCTGATGTTATACCCTTTAATCATCTTTGTTGGGTTCTGCCAAGCCTCCCCAAACTTCCCACACTTCTCATTAGTGGATC...CACACATCTGTTTATACAGTACCATGATTGTTTCTTGAGCAAACAAAAGCAAAGACAGTG|TGACGGACACCAGATTGCCCCCAACTTCCCATCCTCAGGAATAAAA...AGCACCCTGCGCAGTGTGAGACCCAAGTGACAGGCCACAGGAGGGCACTCGCTGGCCATGGGGCATGCAACATACAGCTCTGAATTTGCTGCTTTCCAGAATAGCCTTAGTAGCTTCACAGTCTTG___CATCCCGCGCGCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6118 FBXO11::ENSG00000285898 ENSG00000138081.22::ENSG00000285898.1 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47807994:- chr2:48016455-48133637:- chr2:48035133:- ENSG00000285898 ENSG00000285898.1 lncRNA + - chr2:40591285-40679604:+ chr2:40672086:- chr2:40818425-40906744:+ chr2:40899226:- chr2:47803521,chr2:47803523 chr2:40676223,chr2:40676222 NA NA chr2:48030660,chr2:48030662 chr2:40903363,chr2:40903362 NA NA sense antisense stop-codon 3'UTR/splice-site intron deletion/5'-5' high none F-box-like(100%),Periplasmic_copper-binding_protein_(NosD)(100%),Putative_zinc_finger_in_N-recognin_(UBR_box)(100%),Right_handed_beta_helix_region(100%)| Beta_helix(100%),F-box(100%),F-box-like(100%),NosD(100%),zf-UBR(100%)| 1 3 7 250 25 ENST00000434234.5 unknown upstream downstream mismatches(2) ACATGATAG___GTTTTTCTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATTAGCTGGTGAGCCTACACATGATACAGATACACTATATGACTCTGCTCCACCTATAGAATCTAATACATTGCAGCACAACTGAATTCCTTCCCTAAAGAAAAAGTCCTGCCATTGTAACATCATAACTTAAAACACTTTTTTGGAAGAAGATTTAAAATATTTGCCCATGCTACAGGAAGAGACTGTATTAAAAATGGATACACAAG|AGTGCTGGTTGGTGCGTTTACAATCCTCTAGCTAGACATAAAAGTTCTCCAAGTCACCACTCCACCCAGGAAGTCCAGCTGGCTACACCTCTCACTATGAATGA___AACTTTTCTTTACATGACTATCCCACTGAGAATTACAGAAGAATTTAAGCATTTTCCATGAAAGAGAGATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion FALSE NA NA NA NA NA NA NA NA NA 6119 DOCK3::MAPKAPK3 ENSG00000088538.13::ENSG00000114738.11 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK3 ENSG00000088538.13 protein_coding + + chr3:50674927-51384198:+ chr3:50778758:+ chr3:50712358-51421629:+ chr3:50816189:+ MAPKAPK3 ENSG00000114738.11 protein_coding + + chr3:50611520-50649291:+ chr3:50640366:+ chr3:50648951-50686722:+ chr3:50677797:+ chr3:50809586,chr3:50809583 chr3:50628387,chr3:50628381 NA NA chr3:50847017,chr3:50847014 chr3:50665818,chr3:50665812 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Variant_SH3_domain(59%)|Protein_kinase_domain(89%) SH3_2(48%)|Kdo(100%),PK_Tyr_Ser-Thr(22%),Pkinase(22%) 2 4 0 26 178 ENST00000266037.10 ENST00000446044.5 downstream upstream none CCCGCTGTTGCAGAGGGGATGAGGAATGAGCAAAGATAGCTG___TGATATGCAGCTTTCGAGGATCTGTCCCTCAAGGGTTGGTCTTAGAAATAGGAGAAACAGTCCAGATTCTTGAAAAATGTGAAG|CTCCTGTATGACAGCCCCAAGGCCCGGCAGGAGGTAGACCATCACTGGCAGGCTTCTGGCGGCCCCCATATTGTCTGCATCCTGGA...GGCTTTCACTGAGAGAG___AAGCTGCAGAGATAATGCGGGATATTGGCACTGCCATCCAGTTTCTGCACAGCCATAACATTGCCCACCGAGATGTCAAG___CCTGAAAACCTACTCTACACATCTAAGGAGAAAGACGCAGTGCTTAAGCTCACCGATTTTGGCTTTGCTAAGGAGACCACCCAAAATGCCCTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4787 chr3:50675080-50675163:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-activated protein kinase 3 CAMK MAPKAPK MK2 Q16644 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6120 ITPR1::SUMF1 ENSG00000150995.21::ENSG00000144455.14 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR1 ENSG00000150995.21 protein_coding + + chr3:4493345-4847506:+ chr3:4521094:+ chr3:4535029-4889190:+ chr3:4562778:+ SUMF1 ENSG00000144455.14 protein_coding - + chr3:3700814-4467273:- chr3:4394638:+ chr3:3742498-4508957:- chr3:4436322:+ chr3:4569469,chr3:4569469 chr3:4344880,chr3:4344877 NA NA chr3:4611153,chr3:4611153 chr3:4386564,chr3:4386561 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(22%)| Ins145_P3_rec(3%)| 1 2 1 15 3 ENST00000357086.10 unknown downstream upstream none GCACCTTGGG___CCTGGTTGATGATCGTTGTGTTGTACAGCCAGAAACCGGGGACCTTAACAATCCACCTAAGAAATTCAGAG|GATGTGCTACAGAAGACATTTACTAAGCAACCTAGAAGACAGAAGAGTAGCAATAGCCATAGTGTTTTTATTCTCAGAAGACTGATACAAGGGATCCAGGCAAGGCTGCAGCTGTTTCTCACTGACCCTATATCCTCCTTTAGTTTCTCTGGGTCCTGGGCAGGTCTGTATTTAGCTCTGTGATGAA TLGLVDDRCVVQPETGDLNNPPKKFR|gcatediy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6124 DIAPH2::LINC03077 ENSG00000147202.19::ENSG00000281566.4 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIAPH2 ENSG00000147202.19 protein_coding + + chrX:96684712-97604997:+ chrX:96763120:+ chrX:95939711-96859996:+ chrX:96018119:+ LINC03077 ENSG00000281566.4 lncRNA + - chrX:98450688-98892061:+ chrX:98530134:- chrX:97705686-98147059:+ chrX:97785132:- chrX:96854599 chrX:98534040 NA NA chrX:96109598 chrX:97789038 NA NA sense antisense out-of-frame intron intron inversion/3'-3' medium none Diaphanous_GTPase-binding_Domain(29%)| Drf_GBD(13%)| 4 4 16 21 25 ENST00000324765.13 unknown downstream downstream duplicates(1),mismappers(6),mismatches(6) GGAAGTATTGGATCTCTTTGAAAAAATGATG___GAGGACATGAACCTTAACGAAGAGAAAAAAGCTCCTTTACGAAACAAAGACTTTACCACCAAACGTGAGATGGTTGTCCAGTATATTTCTGCCACTGCCAAATCT___ATAGTTGGAAGTAAAGTTACG|GTATTCCACAGTATCATTGACTTTTGAGTAATCGCTAACTTTCTGTCTTGTGGTCTGCCGTAAGTGTCAGGCCTCCGAGCCCAAGCCAAGCCATCGCATCCCCTGTGACTTGCACGTATACGCCCAGATGGCCTGAAGTAACTGAAGAATCACAAAAGAAGTGAATATGCCCTGCCCCACCTTAACTGATGATATTCCACCACAAAAGAAGTGCAAATGGCCGGTCCTTGCCTTAAGTGATGACATTACCTTGTGAAAGTCCTTcTCCTGGCTCATCCTGGCTCAAAAAGCACCCCCACTGAGCACCTTGCGACCCCC EVLDLFEKMMEDMNLNEEKKAPLRNKDFTTKREMVVQYISATAKSivgskvt|vfhsiidf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6166 CSE1L::ARFGEF2 ENSG00000124207.17::ENSG00000124198.10 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 581 TRUE 1064 TRUE 393 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49091022:+ chr20:47662783-47713497:+ chr20:47707559:+ ARFGEF2 ENSG00000124198.10 protein_coding + + chr20:48921711-49036693:+ chr20:49023051:+ chr20:47538248-47653230:+ chr20:47639588:+ chr20:49091516,chr20:49091523,chr20:49091537,chr20:49091540,chr20:49091541,chr20:49091543,chr20:49091542,chr20:49091552,chr20:49091558,chr20:49091562,chr20:49091501,chr20:49091502,chr20:49091507,chr20:49091510,chr20:49091511 chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462 NA NA chr20:47708053,chr20:47708060,chr20:47708074,chr20:47708077,chr20:47708078,chr20:47708080,chr20:47708079,chr20:47708089,chr20:47708095,chr20:47708099,chr20:47708038,chr20:47708039,chr20:47708044,chr20:47708047,chr20:47708048 chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CAS/CSE_protein__C-terminus(60%),Cse1(100%),Importin-beta_N-terminal_domain(100%)| CAS_CSE1(56%),Cse1(100%),IBN_N(100%)| 64 107 127 1329 527 ENST00000396192.7 ENST00000371917.5 downstream upstream duplicates(22),mismatches(5) CAAAATT___CCTGGGTTACTAGGTGTCTTTCAGAAGCTGATTGCATCCAAAGCAAATGACCACCAAGGTTTTTATCTTCTAAACAGTATAATAGAGCACATGCCTCC___TGAATCAGTTGACCAATATAGGAAACAAATCTTCATTCTGCTATTCCAGAGACTTCAGAATTCCAAAACAACCAAGTTTATCAAGA|ATCAGAAACTGTTTGCCAGCCTCCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGACGAGCAAAAAGGAGGATGCAGAGCACATGGTTGCCGCCCAG___CAAGACACGCTGGATGCAGATATCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATGTCTTCCCAGCACCTCTTCAAGCTGTTGGACTG KIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQIFILLFQRLQNSKTTKFIK|nQKLFASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQHLFKLLD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match TRUE Skin Cutaneous Melanoma,Kidney renal clear cell carcinoma,Breast invasive carcinoma SKIN,KIDNEY,BREAST no_match 47713123|47662960,47675085|47675085,47711500 FALSE|FALSE,FALSE|FALSE,FALSE 47615777|47641850,47648586|47649560,47641850 FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,YES 3UTR-CDS,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6167 CSE1L::ARFGEF2 ENSG00000124207.17::ENSG00000124198.10 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1064 TRUE 393 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49091022:+ chr20:47662783-47713497:+ chr20:47707559:+ ARFGEF2 ENSG00000124198.10 protein_coding + + chr20:48921711-49036693:+ chr20:49025313:+ chr20:47538248-47653230:+ chr20:47641850:+ chr20:49091516,chr20:49091523,chr20:49091537,chr20:49091540,chr20:49091541,chr20:49091543,chr20:49091542,chr20:49091552,chr20:49091558,chr20:49091562,chr20:49091501,chr20:49091502,chr20:49091507,chr20:49091510,chr20:49091511 chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462 NA NA chr20:47708053,chr20:47708060,chr20:47708074,chr20:47708077,chr20:47708078,chr20:47708080,chr20:47708079,chr20:47708089,chr20:47708095,chr20:47708099,chr20:47708038,chr20:47708039,chr20:47708044,chr20:47708047,chr20:47708048 chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none CAS/CSE_protein__C-terminus(60%),Cse1(100%),Importin-beta_N-terminal_domain(100%)| CAS_CSE1(56%),Cse1(100%),IBN_N(100%)| 0 1 43 1329 696 ENST00000396192.7 ENST00000681885.1 downstream upstream duplicates(1),mismatches(3) CAAAATT___CCTGGGTTACTAGGTGTCTTTCAGAAGCTGATTGCATCCAAAGCAAATGACCACCAAGGTTTTTATCTTCTAAACAGTATAATAGAGCACATGCCTCC___TGAATCAGTTGACCAATATAGGAAACAAATCTTCATTCTGCTATTCCAGAGACTTCAGAATTCCAAAACAACCAAGTTTATCAAGA|CAAGACACGCTGGATGCAGATATCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATGTCTTCCCAGCACCTCTTCAAGCTGTTGGACTGTTTGCAGGAATCCCATTCATTCTCAAAGGCCTTCAACTCCAATTACGAGCAGCGGACTGTCCTGTGGCGAGCAG___GTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTT KIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQIFILLFQRLQNSKTTKFIK|tRHAGCRYPHRDGGSGHV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match TRUE Skin Cutaneous Melanoma,Kidney renal clear cell carcinoma,Breast invasive carcinoma SKIN,KIDNEY,BREAST no_match 47713123|47662960,47675085|47675085,47711500 FALSE|FALSE,FALSE|FALSE,FALSE 47615777|47641850,47648586|47649560,47641850 FALSE|TRUE,FALSE|FALSE,TRUE YES,PARTIALLY,YES 3UTR-CDS,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6185 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 584 TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58512852:- chr17:56566890-56595266:- chr17:56590213:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526313:- chr17:56597611-56621729:- chr17:56603674:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 18 25 12 115 144 ENST00000323456.9 ENST00000672673.2 upstream downstream duplicates(4) CAGGCAGCCAGTACCCTTGCCACGGTAGAATG___...CTGCTCCATGCTTAGCTGCTTC___GGTGAGGAGGGGCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTAGTGAAGGAGGAAGAGAATCTTCAG|GATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAG___GAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGA csmlscfGEEGPPSLEYIQAKDLFPPKELVKEEENLQ|DDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6186 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 585 TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58512852:- chr17:56566890-56595266:- chr17:56590213:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526978:- chr17:56597611-56621729:- chr17:56604339:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 6 10 5 115 23 ENST00000323456.9 ENST00000672673.2 upstream downstream duplicates(1),low_entropy(1) CGGAAGTGGCAAGAGCGCGGCCTCAGAGGGTCGGGCGGACGCCGCCTGG___TGAGAAGCAGGCAGCCAGTACCCTTGCCACGGTAGAATG___GGTGAGGAGGGGCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTAGTGAAGGAGGAAGAGAATCTTCAG|ATCAAGCGTTTCCTGGAGGACACCACGGATGATGGAGAACTGAGCAAGTTCGTGAAGGATTTCTCAGGAAATGCGAGCTGCCACCCACCAGAGGCTAAGACCTGGGCATCCAGGCCCCAAGTCCCGGAGCCAAGGCCCCAGGCCCCGGACCTCTATGATGATGACCTGGAGTTCAGAC...CAAGCTTGATCCCTA MGEEGPPSLEYIQAKDLFPPKELVKEEENLQ|IKRFLEDTTDDGELSKFVKDFSGNASCHPPEAKTWASRPQVPEPRPQAPDLYDDDLEFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6187 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58512852:- chr17:56566890-56595266:- chr17:56590213:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526410:- chr17:56597611-56621729:- chr17:56603771:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 1 1 12 115 15 ENST00000323456.9 ENST00000583273.5 upstream downstream duplicates(1) CAGGCAGCCAGTACCCTTGCCACGGTAGAATG___...GCTCCATGCTTAGCTGCTTC___GGTGAGGAGGGGCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTAGTGAAGGAGGAAGAGAATCTTCAG|GCTGGGGCAAAGGCCTGAAAGGGAGAGAAGATTGGCGCTGGGTGCCGG...GTCTACTAGGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAG___GAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGACCGGAAACTTCTTGGTGCTGAAG smlscfGEEGPPSLEYIQAKDLFPPKELVKEEENLQ|agaka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6188 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58516580:- chr17:56566890-56595266:- chr17:56593941:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526313:- chr17:56597611-56621729:- chr17:56603674:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 1 2 2 47 144 ENST00000323456.9 ENST00000672673.2 upstream downstream none CGGGACTGCGCGGCCTCAGCAGCTGCGGGAGACGGAAGTGGCAAGAGCGCGGCCTCAGAGGGTCGGGCGGACGCCGCCTGG___TGAGAAGCAGGCAGCCAGTACCCTTGCCACGGTAGAATG|GATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGG...ACACCAGGTTTTGGGGATGCAGTCAACAACACAGAGTG___CTGGAAGCCTGTGGCAGAATACATTGATCAGCAGTTTGAGCAGTATTTCCGAGACGAGAGTGG M|DDKEYVGFATLPNQVHRKSVKKGFDFTLMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6189 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58514363:- chr17:56566890-56595266:- chr17:56591724:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526313:- chr17:56597611-56621729:- chr17:56603674:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 0 3 0 52 144 ENST00000682306.1 ENST00000672673.2 upstream downstream none CTGGCCCAGACCGCCCGCGACCATGAGCCTGACCGCCCGCGTCTCCTGCTCCATGCTTAGCTGCTTC|GATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAG___GAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGACCGGAAACTTCTTGGTGC...GAGAGGATCATGCAAACTGTGGAGATCACTAAGCATGCAGTGGACATAGAAGAGAAGGGTGTGAGGCTGCGGCTCACCATTGTGGACACACCAGGTTTTGG MSLTARVSCSMLSCF|DDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6190 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58516580:- chr17:56566890-56595266:- chr17:56593941:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526978:- chr17:56597611-56621729:- chr17:56604339:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Septin(100%) |MMR_HSR1(100%),Septin(100%) 0 1 0 47 23 ENST00000323456.9 ENST00000672673.2 upstream downstream none CAGGCAGCCAGTACCCTTGCCACGGTAGAATG|ATCAAGCGTTTCCTGGAGGACACCACGGATGATGGAGAACTGAGCAAGTTCGTGAAGGATTTCTCAGGAAATGCGAGCTG M|IKRFLEDTTDDGELSKFVKDFSGNAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6191 CUX1::GINS3 ENSG00000257923.12::ENSG00000181938.14 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1067 TRUE 395 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102028145:+ chr7:101459184-101927250:+ chr7:101671425:+ GINS3 ENSG00000181938.14 protein_coding + + chr16:58295080-58406147:+ chr16:58386621:+ chr16:58328984-58440051:+ chr16:58420525:+ chr7:102044503,chr7:102044503 chr16:58353410,chr16:58353407 NA NA chr7:101687783,chr7:101687783 chr16:58387314,chr16:58387311 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none |GINS_complex_protein(100%) |Sld5(100%) 20 11 21 466 43 ENST00000437600.9 ENST00000561952.1 downstream upstream duplicates(2) TGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG___AGAGAACTCGATGCCACCGCAACGGTATTGGCGAACCGGCAGGATGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG___GATTTGCGCAAGCAGGTAGCGCCGCTGCTGAAGAGTTTCCAAGGAGAG|GTCCTCCACTTCTTCCACCTTGGCTACCCCTGAGATAGCAAGACCAATCCTTCCTCTTCTTCCTCCTTCTCAGTCTACACAACAAGAAGACGACAAGGATGAAGGCCTTTATCATGACTCACTTCCATTCAATGAATAGTAAATGTATTTTCTCTTCCTTAT AANVGSMFQYWKRFDLQQLQRELDATATVLANRQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGE|vlhffhlgyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 6192 CUX1::GINS3 ENSG00000257923.12::ENSG00000181938.14 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1067 TRUE 395 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102028145:+ chr7:101459184-101927250:+ chr7:101671425:+ GINS3 ENSG00000181938.14 protein_coding + + chr16:58295080-58406147:+ chr16:58392230:+ chr16:58328984-58440051:+ chr16:58426134:+ chr7:102044503,chr7:102044503 chr16:58353410,chr16:58353407 NA NA chr7:101687783,chr7:101687783 chr16:58387314,chr16:58387311 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none |GINS_complex_protein(100%) |Sld5(100%) 1 2 2 466 38 ENST00000437600.9 ENST00000564814.1 downstream upstream none CGGCAGGATGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG___GATTTGCGCAAGCAGGTAGCGCCGCTGCTGAAGAGTTTCCAAGGAGAG|TTAAGGATCACATGAACACAATCCAGTACAAATGGGTCCAGGAGCTTCAACGAGCGTTCCAGCTTCTTCGTAACGTTCCCACACCGTGCAGCAAGCGGAGGGAAGAGAACTTCCGGCGCCCCCACCTACCGCTCCCCAGCCG...TGCCGGTGCGCACGGAGACCGCCATGCCTCGCCTTGGCGCTTTCTTCCTGGAGCGGcGCGCAGGCGCCGAGACTGACAACGCGGTCCCACAG___GGTTCCAAG RQDESEQSRKRLIEQSREFKKNTPEDLRKQVAPLLKSFQGE|lrit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 6193 CUX1::GINS3 ENSG00000257923.12::ENSG00000181938.14 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1067 TRUE 395 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102028145:+ chr7:101459184-101927250:+ chr7:101671425:+ GINS3 ENSG00000181938.14 protein_coding + + chr16:58295080-58406147:+ chr16:58403098:+ chr16:58328984-58440051:+ chr16:58437002:+ chr7:102044503,chr7:102044503 chr16:58353410,chr16:58353407 NA NA chr7:101687783,chr7:101687783 chr16:58387314,chr16:58387311 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |GINS_complex_protein(100%) |Sld5(100%) 0 1 1 466 202 ENST00000437600.9 ENST00000318129.6 downstream upstream none TAGCGCCGCTGCTGAAGAGTTTCCAAGGAGAG|GGgTCCAAGCTTGAACTACCCTTGTGGCTGGCAAAAGGACTTTTTGACAACAAGCGACGGATCCTTTCTGTGGAACTCCCCAAGATCTgCCAAGAGGGTTGGAGGACTGTGTTCA...CCTGCATTTTGACAGTCCCGAGAATGCAGACATTTCCCAGTCTCTGCTGCAG___ACTTTTATCGGACGTTTTCGCCGCATCATGGACTCCTCACAGAATGCTT APLLKSFQGE|GSKLELPLWLAKGLFDNKRRILSVELPKIcQEGWRTVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 6194 CUX1::GINS3 ENSG00000257923.12::ENSG00000181938.14 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1067 TRUE 395 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102028145:+ chr7:101459184-101927250:+ chr7:101671425:+ GINS3 ENSG00000181938.14 protein_coding + + chr16:58295080-58406147:+ chr16:58404499:+ chr16:58328984-58440051:+ chr16:58438403:+ chr7:102044503,chr7:102044503 chr16:58353410,chr16:58353407 NA NA chr7:101687783,chr7:101687783 chr16:58387314,chr16:58387311 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |GINS_complex_protein(30%) |Sld5(6%) 1 0 0 466 247 ENST00000437600.9 ENST00000318129.6 downstream upstream none GGAGTTCAAGAAGAACACTCCAGAG___GATTTGCGCAAGCAGGTAGCGCCGCTGCTGAAGAGTTTCCAAGGAGAG|ACTTTTATCGGACGTTTTCGCCGCATCATGGACTCCTCACAGAATGCTTACAACGAAG EFKKNTPEDLRKQVAPLLKSFQGE|TFIGRFRRIMDSSQNAYNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 6195 SS18L1::MYH15 ENSG00000184402.15::ENSG00000144821.11 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 586 TRUE 1068 TRUE 396 SS18L1 ENSG00000184402.15 protein_coding + + chr20:62143769-62182514:+ chr20:62143889:+ chr20:60718825-60757570:+ chr20:60718945:+ MYH15 ENSG00000144821.11 protein_coding - - chr3:108380368-108529322:- chr3:108476515:- chr3:108099215-108248169:- chr3:108195362:- chr20:62150676 chr3:108480117 NA NA chr20:60725732 chr3:108198964 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none SSXT_protein_(N-terminal_region)(16%)|Myosin_head_(motor_domain)(57%),Myosin_tail(100%) SSXT(0%)|Myosin_head(46%),Myosin_tail_1(100%) 15 10 18 243 46 ENST00000331758.8 ENST00000273353.5 downstream downstream duplicates(4),low_entropy(2),mismappers(1),mismatches(1) AGCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCCAGAAG|ATGCTGACAAAGCTGCTTTCCTCATGGGCATTAACTCCTCTGAGTTGGTAAAGTGCTTGATCCATCCTAGAATCAAAGTTGGTAACGAATATGTTACCAGAGGTCAAACTATAGAACAG___GTAACCTGTGCTGTCGGTGCCCTGTCCAAGTCAATGTATGAAAGGATGTTTAAGTGGCTAGTGGCACGGATCAACAG MSVAFASARPRGKGEVTQQTIQK|mltkllsswaltplsw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE synovial sarcoma translocation gene on chromosome 18-like 1 1 synovial sarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6196 SS18L1::MYH15 ENSG00000184402.15::ENSG00000144821.11 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1068 TRUE 396 SS18L1 ENSG00000184402.15 protein_coding + + chr20:62143769-62182514:+ chr20:62143889:+ chr20:60718825-60757570:+ chr20:60718945:+ MYH15 ENSG00000144821.11 protein_coding - - chr3:108380368-108529322:- chr3:108470847:- chr3:108099215-108248169:- chr3:108189694:- chr20:62150676 chr3:108480117 NA NA chr20:60725732 chr3:108198964 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SSXT_protein_(N-terminal_region)(16%)|Myosin_head_(motor_domain)(51%),Myosin_tail(100%) SSXT(0%)|Myosin_head(35%),Myosin_tail_1(100%) 0 1 10 243 61 ENST00000331758.8 ENST00000273353.5 downstream downstream none GCGCAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCCAGAAG|GTAACCTGTGCTGTCGGTGCCCTGTCCAAGTCAATGTATGAAAGGATGTTTAAGTGGCTAGTGGCACGGATCAACAGGGCCCTGGATGCCAAGCTGTCAAGGCAGTTCTTCATTGGCATTCTTGACATCACTGGTTTTGAAATCCTTGAG___TATAATAGCCTTGAGCAACTTTGCATTAATTTTACCAATGAAAAATTACAACAATTCTTCAATTGGCACATGTTTGTTCTGGAGCAAGAGGAATATAAGAAAGAAA MSVAFASARPRGKGEVTQQTIQK|VTCAVGALSKSMYERMFKWLVARINRALDAKLSRQFFIGILDITGFEILEYNSLEQLCINFTNEKLQQFFNWHMFVLEQEEYKKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE synovial sarcoma translocation gene on chromosome 18-like 1 1 synovial sarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6197 SS18L1::MYH15 ENSG00000184402.15::ENSG00000144821.11 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1068 TRUE 396 SS18L1 ENSG00000184402.15 protein_coding + + chr20:62143769-62182514:+ chr20:62143889:+ chr20:60718825-60757570:+ chr20:60718945:+ MYH15 ENSG00000144821.11 protein_coding - - chr3:108380368-108529322:- chr3:108464814:- chr3:108099215-108248169:- chr3:108183661:- chr20:62150676 chr3:108480117 NA NA chr20:60725732 chr3:108198964 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SSXT_protein_(N-terminal_region)(16%)|Myosin_head_(motor_domain)(35%),Myosin_tail(100%) SSXT(0%)|Myosin_head(22%),Myosin_tail_1(100%) 1 1 4 243 72 ENST00000331758.8 ENST00000273353.5 downstream downstream none CAGCCGGAGTATCCACCTCGATGACCACGGGCTGAGCCCCGCGCCGCCACCATGTCCGTGGCCTTCGCGTCTGCCCGGCCAAGAGGCAAAGGGGAGGTTACGCAGCAAACCATCCAGAAG|CCAATGGGCATCCTTTCCATCCTTGAAGAAGAGTGTATGTTTCCTAAGGCTACAGACCTGACTTTCAAGACCAAACTCTTTGACAACCATTTTGGAAAGTCGGTTCATCTCCAGAAGCCCAAGCCTGATAAGAAGAAATTTGAAGCTCATTTTGAACTTGTCCATTATGCAGGAGTG___GTACCTTATAATATCAGTGGTTGGCTGGAAAAGAA MSVAFASARPRGKGEVTQQTIQK|PMGILSILEEECMFPKATDLTFKTKLFDNHFGKSVHLQKPKPDKKKFEAHFELVHYAGVVPYNISGWLEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE synovial sarcoma translocation gene on chromosome 18-like 1 1 synovial sarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6198 TNS3::INTS1 ENSG00000136205.18::ENSG00000164880.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 587 FALSE NA FALSE NA TNS3 ENSG00000136205.18 protein_coding - - chr7:47275154-47582558:- chr7:47506907:- chr7:47314752-47622156:- chr7:47546505:- INTS1 ENSG00000164880.16 protein_coding - - chr7:1470277-1504389:- chr7:1482707:- chr7:1509913-1544025:- chr7:1522343:- chr7:47493189,chr7:47493191 chr7:1483424,chr7:1483423 NA NA chr7:47532787,chr7:47532789 chr7:1523060,chr7:1523059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none C1_1(46%)| 10 17 16 450 250 ENST00000457718.6 ENST00000404767.8 upstream downstream duplicates(6),mismatches(3) GAATTAACCTCGAGTCTGCACaCTTTTAAGAACAAGGCCTTTAAAAAATCCAAAGTGTGTGGAGTTTGCAAACAAATTATTGACGGTCAAGGTATTTCATGCCGAG___CCTGCAAGTATTCCTGCCACAAGAAATGTGAAGCCAAG|CCGACGACAGCGAGTTCCAGGCGCTGCTGGACATCTGGTTTCCGGAGGAGAAGCCACTGCCCACCGCCTTCCTGGTGGACACATCGGAGGAGGCGCTGCTGCTTCCTGACTGGCTGAAGCTGCGCATGATCCGTTCTGAGGTGCTCCGCCTGGTGGACGCCG___CCCTGCAGGACCTGGAGCCGCAGCAGCTGCTGCTGTTCGTGCAGTCGTTTGGCATCCCCGTGTCCAGCATGAGCAAACTCCTCCAGTTCCTGGACCAGGCAGTGGCC ELTSSLHtFKNKAFKKSKVCGVCKQIIDGQGISCRACKYSCHKKCEAK|pttassrrcwtsgfrrrshcpppswwthrrrrccfltg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6199 PITPNA::SLC43A2 ENSG00000174238.16::ENSG00000167703.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 588 FALSE NA FALSE NA PITPNA ENSG00000174238.16 protein_coding - - chr17:1517718-1562792:- chr17:1558529:- chr17:1421012-1466086:- chr17:1461823:- SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1593279:- chr17:1472562-1532180:- chr17:1496573:- chr17:1557355 chr17:1594620 NA NA chr17:1460649 chr17:1497914 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Phosphatidylinositol_transfer_protein(5%)|Major_Facilitator_Superfamily(73%) IP_trans(14%)|MFS_1(23%) 16 17 7 350 109 ENST00000313486.12 ENST00000301335.10 upstream downstream duplicates(2),mismatches(8) CGGCGGGCAGCGGGCGGGAGGCCGGGCGGGCCGCGGGCAGCCACCGAGCCGCGAAGCGACATGGTGCTGCTCAAGGAGTA___TCGAGTAATCCTGCCTGTGTCTGTAGATGAG|CTGCCCAACATGTTCGGCGACCTTCGGTCCACGTTTATTGCCTTGATGATTGGGTCCTACGCCTCCTCGGCAGTCACCTTTCCAGGAATCAAG___CTCATCTATGATGCTGGTGTCTCCTTCATCGTCGTCCTCGTGGTCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAACTGCTTCTTTAACTGGCCCCTTGAGCCCTTCCCGGGGCCGGAGGACATGGACTACTC___GGTGAAGATCAAGTTCAGCTGGCTGGGCTTTGACCACAAGATCACAGG MVLLKEYRVILPVSVDE|LPNMFGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGVSFIVVLVVWAGCSGLVFLNCFFNWPLEPFPGPEDMDYSVKIKFSWLGFDHKIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match TRUE Kidney renal papillary cell carcinoma KIDNEY no_match 1442163 FALSE 1520063 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6200 NUP155::ENSG00000246316 ENSG00000113569.16::ENSG00000246316.8 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP155 ENSG00000113569.16 protein_coding - - chr5:37288137-37371106:- chr5:37304739:- chr5:37288239-37371208:- chr5:37304841:- ENSG00000246316 ENSG00000246316.8 lncRNA - + chr5:114475339-114668410:- chr5:114561065:+ chr5:113811036-114004107:- chr5:113896762:+ chr5:37303554,chr5:37303559 chr5:114533985,chr5:114533980 NA NA chr5:37303656,chr5:37303661 chr5:113869682,chr5:113869677 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Non-repetitive/WGA-negative_nucleoporin_C-terminal(70%),Nup133_N_terminal_like(100%)| Nucleoporin_C(74%),Nucleoporin_N(100%)| 7 8 18 105 22 ENST00000231498.8 unknown upstream upstream duplicates(5),mismatches(1) CCTCAGTCTCCCAGTGTACCCAAAAAACCTGGTCCTCCAGTGTTGTCATCTGATCCAAATATGCTGAGTAATGAAGAAGCAGGACATCAT___TTTGAACAAATGCTTAAATTGTCACAGCGATCCAAGGATGAGCTCTTTAGTATTGCCCTTTATAATTGGCTAATACAAGTCGACCTTGCAGATAAGCTGCTACAG|ACTCAGTGGTCTAACATGGGCTGTTTCTTATGCTGATGGCAGAGAGCAAGACCAAATGCACAACACTCCCCAAGCTTTTGATCACATCTCACCCACTAATGTTCTGTTGACTAAAGCAAACCACATGGGACATTCAAGTTAAGAGGCAGAAAAATACAGCACACATTTTTGTGGAAGGAACCTGCAGTCATATGGAAAAGAACCTGAACCCAGGGAAGATGCAATCTACCACTGCACTTCATAATTGCAA PQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQ|tqwsnmgcflc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6202 SH3PXD2A::ENSG00000289744 ENSG00000107957.17::ENSG00000289744.1 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1069 TRUE 397 SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103855195:- chr10:105353784-105615342:- chr10:105614953:- ENSG00000289744 ENSG00000289744.1 lncRNA - - chr10:103856805-103967040:- chr10:103910622:- chr10:105616563-105726798:- chr10:105670380:- chr10:103822518,chr10:103822526 chr10:103914086,chr10:103914089 NA NA chr10:105582276,chr10:105582284 chr10:105673844,chr10:105673847 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 8 14 2 28 107 ENST00000355946.7 ENST00000698239.1 upstream downstream duplicates(5),mismatches(1) GTCCGGGCAGCGTTCGGCGCGCCGGGCCGGGGTGGCGGGCGGCCCCGGGACCCgGGCAGCTGGAGAAGGAGCCGGAGCCCGGCCaGGATGAGAAGGTGACGCCGCCGGGGGCGCCACTCGCTTTGTGGGGGAAGATGCTCGCCTACTGCGTGCAGGATGCCACCGTGGTGGACGTGGAGAAGCGGAGGAACCCCTCCAAGCACTAC|GTGTATTTTTGTACAATGGACATCCAATAAAACAGGTAGATGTCTTGGGAACTGTCATTGGAGTGAGAGAAAGAGATGCTTTCTACAGTTATGGAG___TGGATGACAGCACTGGAGTTATAAACTGCATCTGCTGGAAAAAGTTGAATACTGAGTCTGTATCAG___CTGCTCCAAGTGCAGCAAGAGAGCTCAGCTTAACCTCACAACTTAAGAAGCTAC...ACCATTGAGCAGAAAACAAAGATAGAGATCGGGGACACGATCCGAGTCAGAGGCAGTATCCGCACATACAGAGAAGAGCGAGAGATTCATGCCACCgCTTACT___ATAAAGTGGACGACC MLAYCVQDATVVDVEKRRNPSKHY|vyfctmdiq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6203 SH3PXD2A::ENSG00000289744 ENSG00000107957.17::ENSG00000289744.1 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1069 TRUE 397 SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103855195:- chr10:105353784-105615342:- chr10:105614953:- ENSG00000289744 ENSG00000289744.1 lncRNA - - chr10:103856805-103967040:- chr10:103905156:- chr10:105616563-105726798:- chr10:105664914:- chr10:103822518,chr10:103822526 chr10:103914086,chr10:103914089 NA NA chr10:105582276,chr10:105582284 chr10:105673844,chr10:105673847 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 0 1 2 28 116 ENST00000355946.7 ENST00000698239.1 upstream downstream mismatches(1) AGTCCGGGCAGCGTTCGGCGCGCCGGGCCGGGGTGGCGGGCGGCCCCGGGACCCgGGCAGCTGGAGAAGGAGCCGGAGCCCGGCCaGGATGAGAAGGTGACGCCGCCGGGGGCGCCACgCtCTTTGTGGGGGgAG...CGCCTACTGCGTGCAGGATGCCACCGTGGTGGACGTGGAGAAGCGGAGGAACCCCTCCAAGCACTAC|TGGATGACAGCACTGGAGTTATAAACTGCATCTG...ACTTAAGAAGCTACAAGAGACCATTGAGCAGAAAACAAAGATAGAGATCGGGGACACGATCCGAGTCAGAGGCAGTATCCGCACATACAGAGAAGAGCGAG AYCVQDATVVDVEKRRNPSKHY|wmtalel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6204 SH3PXD2A::STN1 ENSG00000107957.17::ENSG00000107960.12 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 590 TRUE 1070 TRUE 398 SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103855195:- chr10:105353784-105615342:- chr10:105614953:- STN1 ENSG00000107960.12 protein_coding - - chr10:103856806-103918332:- chr10:103910622:- chr10:105616564-105678090:- chr10:105670380:- chr10:103822518,chr10:103822526 chr10:103914086,chr10:103914089 NA NA chr10:105582276,chr10:105582284 chr10:105673844,chr10:105673847 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |CST__complex_subunit_STN1__C_terminal(100%),OB-fold_nucleic_acid_binding_domain(100%) |STN1_2(100%),Stn1(44%),tRNA_anti-codon(100%) 8 14 2 28 107 ENST00000355946.7 ENST00000698302.1 upstream downstream duplicates(5),mismatches(1) GTCCGGGCAGCGTTCGGCGCGCCGGGCCGGGGTGGCGGGCGGCCCCGGGACCCgGGCAGCTGGAGAAGGAGCCGGAGCCCGGCCaGGATGAGAAGGTGACGCCGCCGGGGGCGCCACTCGCTTTGTGGGGGAAGATGCTCGCCTACTGCGTGCAGGATGCCACCGTGGTGGACGTGGAGAAGCGGAGGAACCCCTCCAAGCACTAC|GTGTATTTTTGTACAATGGACATCCAATAAAACAGGTAGATGTCTTGGGAACTGTCATTGGAGTGAGAGAAAGAGATGCTTTCTACAGTTATGGAG___TGGATGACAGCACTGGAGTTATAAACTGCATCTGCTGGAAAAAGTTGAATACTGAGTCTGTATCAG___CTGCTCCAAGTGCAGCAAGAGAGCTCAGCTTAACCTCACAACTTAAGAAGCTAC...ACCATTGAGCAGAAAACAAAGATAGAGATCGGGGACACGATCCGAGTCAGAGGCAGTATCCGCACATACAGAGAAGAGCGAGAGATTCATGCCACCgCTTACT___ATAAAGTGGACGACC MLAYCVQDATVVDVEKRRNPSKHY|VYFCTMDIQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6205 SH3PXD2A::STN1 ENSG00000107957.17::ENSG00000107960.12 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1070 TRUE 398 SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103855195:- chr10:105353784-105615342:- chr10:105614953:- STN1 ENSG00000107960.12 protein_coding - - chr10:103856806-103918332:- chr10:103905156:- chr10:105616564-105678090:- chr10:105664914:- chr10:103822518,chr10:103822526 chr10:103914086,chr10:103914089 NA NA chr10:105582276,chr10:105582284 chr10:105673844,chr10:105673847 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |CST__complex_subunit_STN1__C_terminal(100%),OB-fold_nucleic_acid_binding_domain(79%) |STN1_2(100%),Stn1(0%),tRNA_anti-codon(48%) 0 1 2 28 116 ENST00000355946.7 ENST00000698298.1 upstream downstream mismatches(1) AGTCCGGGCAGCGTTCGGCGCGCCGGGCCGGGGTGGCGGGCGGCCCCGGGACCCgGGCAGCTGGAGAAGGAGCCGGAGCCCGGCCaGGATGAGAAGGTGACGCCGCCGGGGGCGCCACgCtCTTTGTGGGGGgAG...CGCCTACTGCGTGCAGGATGCCACCGTGGTGGACGTGGAGAAGCGGAGGAACCCCTCCAAGCACTAC|TGGATGACAGCACTGGAGTTATAAACTGCATCTG...ACTTAAGAAGCTACAAGAGACCATTGAGCAGAAAACAAAGATAGAGATCGGGGACACGATCCGAGTCAGAGGCAGTATCCGCACATACAGAGAAGAGCGAG AYCVQDATVVDVEKRRNPSKHY|wmtalel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6206 CDH13::ENSG00000261285 ENSG00000140945.17::ENSG00000261285.7 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:82627137:+ chr16:82660570-83834245:+ chr16:82660742:+ ENSG00000261285 ENSG00000261285.7 lncRNA - + chr16:82491738-82575518:- chr16:82551106:+ chr16:82525343-82609123:- chr16:82584711:+ chr16:82754078,chr16:82754078 chr16:82498717,chr16:82498714 NA NA chr16:82787683,chr16:82787683 chr16:82532322,chr16:82532319 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 14 2 605 25 ENST00000567109.6 unknown downstream upstream duplicates(3) AGGCAGAGCCTCTCCTCAAAGCCTGGCTCCCACGGAAAATATGCTCAGTGCAGCCGCGTGCATGAATGAAAACGCCGCCGGGCGCTTCTAGTCGGACAAAATGCAGCCGAGAACTCCGCTCGTTCTGTGCGTTCTCCTGTCCCAG|GTGGTGCATGAAGAAACCAAACAGAAGTGGAAGAAGG___ACATGAAGAGAGGGAGTGGAATGAGCAGAAGTAGGCACCTTAGCATCAGAGGTCCTCTTCTAT...___GACCAGCGGAGACCATTTCTATGTCCATTTGGAGTGTTGGGACTGAATGGGGATGCAAAAGAGGA MQPRTPLVLCVLLSQ|vvheetkqkwkkdmkrgsgmsrsrhlsirgpll NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6207 TAF4::HHLA2 ENSG00000130699.20::ENSG00000114455.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1071 TRUE 399 TAF4 ENSG00000130699.20 protein_coding - - chr20:61953469-62065881:- chr20:62064451:- chr20:60528525-60640937:- chr20:60639507:- HHLA2 ENSG00000114455.15 protein_coding + + chr3:108296529-108378285:+ chr3:108351788:+ chr3:108015376-108097132:+ chr3:108070635:+ chr20:62020781,chr20:62020783 chr3:108313640,chr3:108313638 NA NA chr20:60595837,chr20:60595839 chr3:108032487,chr3:108032485 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Immunoglobulin_C1-set_domain(100%),Immunoglobulin_V-set_domain(100%) |C1-set(100%),V-set(100%),ig(100%) 2 5 4 107 11 ENST00000252996.9 ENST00000467761.6 upstream upstream duplicates(2),mismatches(1) GCCGCCCGCCCCCGGGACCCCCACCGGGCTGCCCAAAGGCGCGGCCGGCGCAGTGACCCAGAGCCTGTCCCGGACGCCCACGGCCACCACCAGCGGGATTCGGGCCACCCTGACGCCCACCGTGCTGGCCCCCCGCTTGCCGCAGCCGCCTCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAG|CATGACTAATATGTTCTGCACAAGACATGAAGGCACAGACAGCACTGTCTTTCTTCCTCATTCTCATAACATCTCTGAGTGGATCTCAAG___GCATATTCCCTTTGGCTTTCTTCAcTTATGTTCCTATGAATGAAC PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPP|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6208 TAF4::HHLA2 ENSG00000130699.20::ENSG00000114455.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1071 TRUE 399 TAF4 ENSG00000130699.20 protein_coding - - chr20:61953469-62065881:- chr20:62064451:- chr20:60528525-60640937:- chr20:60639507:- HHLA2 ENSG00000114455.15 protein_coding + + chr3:108296529-108378285:+ chr3:108328270:+ chr3:108015376-108097132:+ chr3:108047117:+ chr20:62020781,chr20:62020783 chr3:108313640,chr3:108313638 NA NA chr20:60595837,chr20:60595839 chr3:108032487,chr3:108032485 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Immunoglobulin_C1-set_domain(100%),Immunoglobulin_V-set_domain(100%) |C1-set(100%),V-set(100%),ig(100%) 0 4 4 107 4 ENST00000252996.9 ENST00000491820.5 upstream upstream none GCCGCCCGCCCCCGGGACCCCCACCGGGCTGCCCAAAGGCGCGGCCGGCGCAGTGACCCAGAGCCTGTCCCGGACGCCCACGGCCACCACCAGCGGGATTCGGGCCACCCTGACGCCCACCGTGCTGGCCCCCCGCTTGCCGCAGCCGCCTCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAG|CATGTAGGAGAATACTAACCCTGCACAGATTGTGATGGTGATGTGGAATATACTAAAGCCTAGAACGCACCTCCTCTG___CATGACTAATATGTTCTGCACAAGACATGAAGGCACAGACAGCACTGTCTTTCTTCCTCATTCTCATAACATCTCTGAGTGGATCTCAAG___GCATATTCC...CTACAAAGGCAGTGACCATTTGGAAAGCCAAGATCCCAGATATGCAAACAGGACATCCCTTTTCTATAATGAGATTCAAAATGGGAATGCGTCGCTATTTT PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPP|acrriltlhrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6209 TAF4::HHLA2 ENSG00000130699.20::ENSG00000114455.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1071 TRUE 399 TAF4 ENSG00000130699.20 protein_coding - - chr20:61953469-62065881:- chr20:62064451:- chr20:60528525-60640937:- chr20:60639507:- HHLA2 ENSG00000114455.15 protein_coding + + chr3:108296529-108378285:+ chr3:108353427:+ chr3:108015376-108097132:+ chr3:108072274:+ chr20:62020781,chr20:62020783 chr3:108313640,chr3:108313638 NA NA chr20:60595837,chr20:60595839 chr3:108032487,chr3:108032485 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Immunoglobulin_C1-set_domain(100%),Immunoglobulin_V-set_domain(100%) |C1-set(100%),V-set(100%),ig(100%) 1 0 2 107 11 ENST00000252996.9 ENST00000467761.6 upstream upstream none CCAAAGGCGCGGCCGGCGCAGTGACCCAGAGCCTGTCCCGGACGCCCACGGCCACCACCAGCGGGATTCGGGCCACCCTGACGCCCACCGTGCTGGCCCCCCGCTTGCCGCAGCCGCCTCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAG|GCATATTCCCTTTGGCTTTCTTCAcTTATGTTCCTATGAATGAACAAATCGTCATTGGAAGACTTGATGAAGATATAATTCTCCCTTCTTCATTTGAGAGGGGATCCGAAGTCGTAATACACTGGAAGTATCAAGATAGCTATAAGGTTCACAGTTACTACAAAGGCAGTGACCATTTGGAAAGCCAAGATCCCAGATATGCAAACAGGAC KGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPP|gIFPLAFFtYVPMNEQIVIGRLDEDIILPSSFERGSEVVIHWKYQDSYKVHSYYKGSDHLESQDPRYANR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6214 LINC01572::WDR59 ENSG00000261008.9::ENSG00000103091.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72664892:- chr16:72270180-72698913:- chr16:72698791:- WDR59 ENSG00000103091.15 protein_coding - - chr16:74871362-75000173:- chr16:74893812:- chr16:74905260-75034071:- chr16:74927710:- chr16:72643949,chr16:72644007 chr16:74900395,chr16:74900884 NA NA chr16:72677848,chr16:72677906 chr16:74934293,chr16:74934782 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RING/Ubox_like_zinc-binding_domain(100%) |Zn_ribbon_17(100%),zinc_ribbon_16(100%) 1 6 0 17 242 ENST00000561611.2 ENST00000262144.11 upstream downstream none ATTTGAATTTGTGGCGCTTGGTGTCCGCGAGTTGCCGAATGAAGCTGAGCGTCTCAGTGGAACCAGGGATCTCAGGG|AAATCAAGACGATGGAAAAGTAAGCGTGAGGGATCAGACTCTGGCAATCGACAGATCAAGGCTGCTGGGAAAGTCATCATCCAGGATATTGCTTGCCTCCTGCCTGTTCACAAATCGCTGGGAGAGCTGTACAT___ATTGAATGTGAATGATATTCAGGAAAC...GGTCGCTGGCTACGGTAGCTACAGATCTTTGCCTTGGTCCGAAATCTGACCCAGATTTGGAAACACCCTGGGCTCGACATCCATTTGGGCGGCAGCTGCTG...CTCCCCTTGGGGAGAATCCTCACCAGAAGAGCTCCGCTTTGGGAGTCTGACCTACAGTGATCCCCGTGAGCGAGAACGCGACCAGCATGATAAAAATAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6216 GALNT14::EML4 ENSG00000158089.15::ENSG00000143924.19 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1073 TRUE 400 GALNT14 ENSG00000158089.15 protein_coding - - chr2:30910467-31155202:- chr2:31125154:- chr2:31133333-31378068:- chr2:31348020:- EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42261121:+ chr2:42396493-42559688:+ chr2:42488261:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |HELP_motif(100%),WD_domain__G-beta_repeat(100%) |HELP(100%),WD40(100%) 0 1 2 4 129 ENST00000324589.9 ENST00000318522.10 upstream upstream none GGGATGAGCCCTTGGGCGCCTCAGGTGCCTGTATCACCCACTCCTCCCTACCAAAGAGGGCATCTTCCTACAG|TGGTACAGAAAAAAAGAAAGAAAAACCACAAGGACAGAGAGAAAAAAAAGAGGAATCTCATTCTAATGATCAAAGTCCACAAATTCGAGCATCACCTTC GMSPWAPQVPVSPTPPYQRGHLPT|vvqkkrkknhkdrekkkrnlilmikvhkfehhl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation 6217 GALNT14::EML4 ENSG00000158089.15::ENSG00000143924.19 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1073 TRUE 400 GALNT14 ENSG00000158089.15 protein_coding - - chr2:30910467-31155202:- chr2:31137958:- chr2:31133333-31378068:- chr2:31360824:- EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42261121:+ chr2:42396493-42559688:+ chr2:42488261:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |HELP_motif(100%),WD_domain__G-beta_repeat(100%) |HELP(100%),WD40(100%) 1 0 2 158 129 ENST00000349752.10 ENST00000318522.10 upstream upstream none CAGAGCGAGGCGCTCGCCAGGACTCCTGCCCCGCCAACCCTGACCGCCGGGGGGTGCCCCCGGGACGgAGCGCCGCGGAGgGGAAGCGGCAAAGGGGACCA...CTGGTTCTGCCAGTCTTCGGGGTGCTCTGGATCACGGTGCTGCTGTTCTTCTGGGTAACCAAGAGGAAGTTGGAGGTGCCGACGGGACCTGAAGTGCAGACCCCTAAG|TGGTACAGAAAAAAAGAAAGAAAAACCACAAGGACAGAGAGAAAAAAAAGAGGAATCTCATTCTAATGATCAAAGTCCACAAATTCGAGCATCACCTTC LVLPVFGVLWITVLLFFWVTKRKLEVPTGPEVQTPK|wyrkkerkttrterkkrgisf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation 6220 SRC::RPN2 ENSG00000197122.13::ENSG00000118705.18 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 593 FALSE NA FALSE NA SRC ENSG00000197122.13 protein_coding + + chr20:37344685-37406050:+ chr20:37396311:+ chr20:35973088-36034453:+ chr20:36024714:+ RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37213760:+ chr20:35806813-35870022:+ chr20:35842163:+ chr20:37397880,chr20:37397877 chr20:37212761,chr20:37212755 NA NA chr20:36026283,chr20:36026280 chr20:35841164,chr20:35841158 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none SH2_domain(100%),SH3_domain(100%)|Oligosaccharyltransferase_subunit_Ribophorin_II(48%) SH2(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%)|Ribophorin_II(43%) 1 2 4 173 1731 ENST00000692112.1 ENST00000705448.1 downstream upstream none GCGGTTACTGCTCAATGCAGAGAACCCGAGAGGGACCTTCCTCGTGCGAGAAAGTGAGACCACGAAAG___GTGCCTACTGCCTCTCAGTGTCTGACTTCGACAACGCCAAGGGCCTCAACGTGAAGCACTACAAGATCCGCAAGCTGGACAGCGGCGGCTTCTACATCACCTCCCGCACCCAGTTCAACAGCCTGCAGCAGCTGGTGGCCTACTACTCCA|GGATGTTTTTGAACTAAATTTCATGAACGTCAAATTTTCCAGTGGTTATTATGACTTCCTTGTCGAAGTTGAAGGTGACAACCGGTATATTGCAAATACCGTAGAG___CTCAGAGTCAAGATCTCCACTGAAGTTGGCATCACAAATGTTGATCTTTCCAC RLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS|rmfln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Proto-oncogene tyrosine-protein kinase Src TK Src P12931 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SRC proto-oncogene, non-receptor tyrosine kinase 1 Yes colorectal cancer, endometrial carcinoma epithelial oncogene missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6223 MLYCD::NECAB2 ENSG00000103150.7::ENSG00000103154.10 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1075 TRUE 401 MLYCD ENSG00000103150.7 protein_coding + + chr16:83899115-83951445:+ chr16:83912367:+ chr16:83932720-83985050:+ chr16:83945972:+ NECAB2 ENSG00000103154.10 protein_coding + + chr16:83968244-84002776:+ chr16:83990494:+ chr16:84001849-84036381:+ chr16:84024099:+ chr16:83919349,chr16:83919346 chr16:83980874,chr16:83980868 NA NA chr16:83952954,chr16:83952951 chr16:84014479,chr16:84014473 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Malonyl-CoA_decarboxylase_C-terminal_domain(46%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|Antibiotic_biosynthesis_monooxygenase(100%) MCD(12%),MCD_N(100%)|ABM(100%) 3 1 0 38 45 ENST00000262430.6 ENST00000305202.9 downstream upstream none AGAACGGGTTACCTGGCATTCACCGTGTGAAGTGCTTCAGAAAATCAGTGA___GGCTGAGGCTGTGCATCCTGTAAAAAACTGGATGGACATGAAGCGCCGCG...GAGCCCCTGGTCGTTTTGCACGTGGCACTGACTGGTGACATCTCCAGCAACATCCAG___GCAATCGTGAAGGAACATCCTCCATCAGAAACAGAAGAGAAGAACAAAATCACTGCTG...GACTCCAAGGGGTGGAGCTGGGAACATTCCTCATAAAGCGAGTCGTCAAGGAGTTGCAG|GTATATGAGGGTGGGAGCAACGTGGACCAGTTTGTGACCCGCTTCCTCCTGAAGGAGACGGCCAATCAGATCCAGTCGCTG...CCG___ACAGAACCACATCAAACCCAGCCACAGCGCGGCACAGACCTGGTGTGGAAGCCCCACTCCCGCCTCTGCCCCCAACCACAAGCTCATGGCTATGGAAC LQGVELGTFLIKRVVKELQ|VYEGGSNVDQFVTRFLLKETANQIQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6225 MLYCD::NECAB2 ENSG00000103150.7::ENSG00000103154.10 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1075 TRUE 401 MLYCD ENSG00000103150.7 protein_coding + + chr16:83899115-83951445:+ chr16:83908282:+ chr16:83932720-83985050:+ chr16:83941887:+ NECAB2 ENSG00000103154.10 protein_coding + + chr16:83968244-84002776:+ chr16:83990494:+ chr16:84001849-84036381:+ chr16:84024099:+ chr16:83919349,chr16:83919346 chr16:83980874,chr16:83980868 NA NA chr16:83952954,chr16:83952951 chr16:84014479,chr16:84014473 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Malonyl-CoA_decarboxylase_C-terminal_domain(28%),Malonyl-CoA_decarboxylase_N-terminal_domain(100%)|Antibiotic_biosynthesis_monooxygenase(100%) MCD(2%),MCD_N(100%)|ABM(100%) 0 1 0 51 45 ENST00000262430.6 ENST00000305202.9 downstream upstream none CTCCAGCAACATCCAG|GTATATGAGGGTGGGAGCAACGTGGACCAGTTTGTGACCCGCTTCCTCCTGAAGGAGACGGCCAATCAGATCCAGTCGCTGCTGAGCTCAGTGGAGAGTGCGGTGGAGGCCATCGAGG SSNIQ|VYEGGSNVDQFVTRFLLKETANQIQSLLSSVESAVEAIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6228 IKBKE::GIPC2 ENSG00000263528.8::ENSG00000137960.6 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IKBKE ENSG00000263528.8 protein_coding + + chr1:206470476-206496889:+ chr1:206471245:+ chr1:206643819-206670222:+ chr1:206644588:+ GIPC2 ENSG00000137960.6 protein_coding + - chr1:77979542-78138444:+ chr1:77990323:- chr1:78445226-78604128:+ chr1:78456007:- chr1:206474394,chr1:206474393 chr1:77993779,chr1:77993780 NA NA chr1:206647737,chr1:206647736 chr1:78459463,chr1:78459464 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 3 0 0 33 23 ENST00000581977.7 unknown downstream downstream none CACTAGTCCCAGCTCCTGGGGTGGCACAGACATTGCAACTGGCCCTGCCTGTGGGTCCTAGGGGCCCTTGGCTACCAGGAGGCTAAGAACACTGCTCATGAATGACAGTGAGCCCTGAAAGCTCTGGGGGTGTCACCCAGTCCCACAAGCCTGCATCCCCTGCAGTGGAGATGGG___CTCAGCTCCTGGACGTGCCACAGACAG...GAGCCTTTGCCTGACTCAGGGCAGCTCAGAGTGTGGG|TGTGAAGGAGGAACAATTTTTGGAAAGAATCAAAGACAGAACTTTGGGATGACCAGCATTTAAGGGGCACATCAATCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Inhibitor of nuclear factor kappa-B kinase subunit epsilon Other IKK Q14164 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6229 IKBKE::DNAJB4 ENSG00000263528.8::ENSG00000162616.9 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IKBKE ENSG00000263528.8 protein_coding + + chr1:206470476-206496889:+ chr1:206471245:+ chr1:206643819-206670222:+ chr1:206644588:+ DNAJB4 ENSG00000162616.9 protein_coding + - chr1:77979175-78017964:+ chr1:77990323:- chr1:78444859-78483648:+ chr1:78456007:- chr1:206474394,chr1:206474393 chr1:77993779,chr1:77993780 NA NA chr1:206647737,chr1:206647736 chr1:78459463,chr1:78459464 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 3 0 0 33 23 ENST00000581977.7 unknown downstream downstream none CACTAGTCCCAGCTCCTGGGGTGGCACAGACATTGCAACTGGCCCTGCCTGTGGGTCCTAGGGGCCCTTGGCTACCAGGAGGCTAAGAACACTGCTCATGAATGACAGTGAGCCCTGAAAGCTCTGGGGGTGTCACCCAGTCCCACAAGCCTGCATCCCCTGCAGTGGAGATGGG___CTCAGCTCCTGGACGTGCCACAGACAG...GAGCCTTTGCCTGACTCAGGGCAGCTCAGAGTGTGGG|TGTGAAGGAGGAACAATTTTTGGAAAGAATCAAAGACAGAACTTTGGGATGACCAGCATTTAAGGGGCACATCAATCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Inhibitor of nuclear factor kappa-B kinase subunit epsilon Other IKK Q14164 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6261 PAPOLA::ENSG00000289228 ENSG00000090060.19::ENSG00000289228.2 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1079 TRUE 402 PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ ENSG00000289228 ENSG00000289228.2 lncRNA - - chr10:91306958-91575243:- chr10:91350879:- chr10:93066715-93335000:- chr10:93110636:- chr14:96503420,chr14:96503421 chr10:91487053,chr10:91487052 NA NA chr14:96969757,chr14:96969758 chr10:93246810,chr10:93246809 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 21 79 24 455 244 ENST00000216277.13 ENST00000688440.1 downstream downstream duplicates(8),mismatches(8) GAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|ATGAAGCCTGCAGGACACCAGCTGACAGTGGAAGGACTGAGGAAGGTTGTATAATTTTGTGCAAGGTCCACCACAAATCCAGCTGAAGAACTGCTCCAAAGTTTAGGTCATGGCAAGAACAAG___ACTGGATCACTCCATGTCAGTGGAAACATGTCCACCAACTTCATCATTGTCTGTTGTCATGGTTCACTTTAGATGTAAACTTGACTGGATTAAG...GGCCTCTGAGCCCAAGCTAAG MPl|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6262 PAPOLA::ENSG00000289228 ENSG00000090060.19::ENSG00000289228.2 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1079 TRUE 402 PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ ENSG00000289228 ENSG00000289228.2 lncRNA - - chr10:91306958-91575243:- chr10:91307435:- chr10:93066715-93335000:- chr10:93067192:- chr14:96503420,chr14:96503421 chr10:91487053,chr10:91487052 NA NA chr14:96969757,chr14:96969758 chr10:93246810,chr10:93246809 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 1 3 455 272 ENST00000216277.13 ENST00000688440.1 downstream downstream duplicates(1),mismatches(3) GGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|ACTGGATCACTCCATGTCAGTGGAAACATGTCCACCAACTTCATCATTGTCTGTTGTCATGGTTCACTTTAGATGTAAACTTGACTGGATTAAGGATTCCCTAAAGTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCATGTACACATCCAGATGGC?GGTTCCTGC...ACGACATTCCACCACAAAAGAAGTGAAAATGGCCTGTTCCTGCCTTAACTGATGACATTATCTTGTGAAATTCCTTCTCCTGGCTCATCCTGGCTCCAAAG MPl|ldhsmsvetcpptsslsvvmvhfrckldwikdslkcqasepklshhipcdlhvhiqmags NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6263 CCNY::LINC00993 ENSG00000108100.18::ENSG00000235687.10 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35530243:+ chr10:35535953-35861597:+ chr10:35819171:+ LINC00993 ENSG00000235687.10 transcribed_unprocessed_pseudogene + - chr10:37248118-37315801:+ chr10:37299569:- chr10:37537046-37604729:+ chr10:37588497:- chr10:35549483,chr10:35549495,chr10:35549514 chr10:37301988,chr10:37301989,chr10:37301989 NA NA chr10:35838411,chr10:35838423,chr10:35838442 chr10:37590916,chr10:37590917,chr10:37590917 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Cyclin__N-terminal_domain(32%)| Cyclin(0%),Cyclin_N(0%)| 23 15 27 607 74 ENST00000374706.5 unknown downstream downstream duplicates(4),mismatches(2),multimappers(1) CCTCAAGTATACAATTAAATG___TGTCGCTCTTGCAATATATTATCACATCAAAAACAG___GGACCCAGATGGAAGGATGCTCTTAGATATTTTTGATGAAAATCTTCACCCTCTTTCG___AAATCCGAAGTGCCACCAGATTATGACAAACACAACCCAGAGCAGAAGCAGATTTACCGGTTCGTTCGGACACTGTTCAGTGCTGCTCAGCTGACGGCTGAATGTGCCATCGTCACCCTG|AGGCATTTCTGGGCAAGTTTGAGGAGCATGGAATTAACAGTCATCAATGCATTGCTGGATTTGAAAATGATTTATATCAATCAGCAGAGGACCTCCACTGGTGATGTCAGCAGGATCTGAGGATGTTCAG___AAATTGCCTCAGACAGGGATTGATGTCAG LKYTIKCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTL|rhfwaslrsmeltvinalldlkmiyinqqrtstgdvsri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6264 LSM12::PAIP1 ENSG00000161654.10::ENSG00000172239.14 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 594 FALSE NA FALSE NA LSM12 ENSG00000161654.10 protein_coding - - chr17:44034328-44067619:- chr17:44063801:- chr17:42111696-42144987:- chr17:42141169:- PAIP1 ENSG00000172239.14 protein_coding - - chr5:43526267-43557758:- chr5:43543116:- chr5:43526369-43557860:- chr5:43543218:- chr17:44060750,chr17:44060755 chr5:43547708,chr5:43547710 NA NA chr17:42138118,chr17:42138123 chr5:43547810,chr5:43547812 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Anticodon-binding_domain(7%)|MIF4G_domain(77%) AD(0%)|MIF4G(63%) 18 10 19 482 1582 ENST00000591247.6 ENST00000306846.8 upstream downstream duplicates(2),mismatches(6) GCTGCAGGGCGAGGTGGTAGCCTTTGACTACCAATCCAAAATGCTGGCTTTAA___AATGTCCCTCTTCCAGTGGAAAGCCCAACCATGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAG|GCCACATCTATCCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAG___ATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGA LQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSK|ATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6265 KIF13A::KDM1B ENSG00000137177.20::ENSG00000165097.16 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIF13A ENSG00000137177.20 protein_coding - - chr6:17759183-17987635:- chr6:17831101:- chr6:17759414-17987866:- chr6:17831332:- KDM1B ENSG00000165097.16 protein_coding + - chr6:18155329-18223854:+ chr6:18161537:- chr6:18155560-18224085:+ chr6:18161768:- chr6:17829083,chr6:17829085 chr6:18169022,chr6:18169021 NA NA chr6:17829314,chr6:17829316 chr6:18169253,chr6:18169252 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Kinesin-associated(98%),Kinesin_motor_domain(100%)| Kinesin(100%),Kinesin_assoc(51%),Microtub_bd(100%)| 12 14 19 310 32 ENST00000378814.9 unknown upstream downstream duplicates(3),mismappers(1),mismatches(2) AAAACAGAAGAGATAGCACAG___GAAAGACAACGACAACTTGAAAGCATGGGGATTTCCCTGGAGATGTCCGGTATCAAGGTGGGGGATGACAAATGCTACTTAGTCAATCTGAATGCAGACCCTGCTCTTAACGAACTTCTGGTTTATTATTTAAAG|GAAAACTATCTACAAGGATGATGTTTCCACAAAGAACTTCTCACAAGCAGAAATGGGAGGCCAAGACACACATCTAAACAGACCTTTCAGAAGCACTTGCAAAGCACACAGGACATGTTGCCGTACAGCCTGCCTTTTCACATTTCCTGTACTTCTTCTCTGAGC KTEEIAQERQRQLESMGISLEMSGIKVGDDKCYLVNLNADPALNELLVYYLK|enylqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6266 KDM2A::GRK2 ENSG00000173120.15::ENSG00000173020.11 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 595 TRUE 1080 TRUE 403 KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67121358:+ chr11:66886734-67025553:+ chr11:66888829:+ GRK2 ENSG00000173020.11 protein_coding + + chr11:67266473-67286556:+ chr11:67282435:+ chr11:67033944-67054027:+ chr11:67049906:+ chr11:67157214,chr11:67157215 chr11:67282282,chr11:67282280 NA NA chr11:66924685,chr11:66924686 chr11:67049753,chr11:67049751 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |PH_domain(100%),Protein_kinase_domain(39%) |PH(100%),PK_Tyr_Ser-Thr(36%),Pkinase(49%) 23 16 5 156 289 ENST00000529006.7 ENST00000308595.10 downstream upstream duplicates(4),mismappers(3),mismatches(1) ACAAGAACTCAAGAGCAGAATCTCCG___TGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTG|GGGCACCCACGGGTACATGGCTCCGGAGGTCCTGCAGAAGGGCGTGGCCTACGACAGCAGTGCCGACTGGTTCTCTCTGGGGTGCATGCTCTTCAAGTTGCTGCGGGG___GCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACCGCATGACGCTGACGATG___GCCGTGGAGCTGCCCGACTCCTTCTCCCCTGAACTACGCTCCCTGCTG MEPEEERIRYSQRL|ghprvhgsggpaegrglrqqcrlvlsgvhalqvaagaqplpaaqdqrqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Beta-adrenergic receptor kinase 1 AGC GRK BARK P25098 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6267 KDM2A::GRK2 ENSG00000173120.15::ENSG00000173020.11 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1080 TRUE 403 KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67132073:+ chr11:66886734-67025553:+ chr11:66899544:+ GRK2 ENSG00000173020.11 protein_coding + + chr11:67266473-67286556:+ chr11:67282435:+ chr11:67033944-67054027:+ chr11:67049906:+ chr11:67157214,chr11:67157215 chr11:67282282,chr11:67282280 NA NA chr11:66924685,chr11:66924686 chr11:67049753,chr11:67049751 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |PH_domain(100%),Protein_kinase_domain(39%) |PH(100%),PK_Tyr_Ser-Thr(36%),Pkinase(49%) 1 1 5 10 289 ENST00000308783.9 ENST00000308595.10 downstream upstream mismatches(1) CTGTCTGTGAGTACTTGGcAAAAAGTTAAACCCTAAAGATAAAAGGCAGCAAATAGTGACCAAACGAATGTTTTTGGCAAATACATTGGTGAAGGCCTCCTTCAG|GGGCACCCACGGGTACATGGCTCCGGAGGTCCTGCAGAAGGGCGTGGCCTACGACAGCAGTGCCGACTGGTTCTCTCTGGGGTGCATGCTCTTCAAGTTGCTGCGGGG___GCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACCGCATGACGCTGACGATG___GCCGTGGAGCTGCCCGACTCCTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Beta-adrenergic receptor kinase 1 AGC GRK BARK P25098 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6268 KDM2A::GRK2 ENSG00000173120.15::ENSG00000173020.11 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1080 TRUE 403 KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67143371:+ chr11:66886734-67025553:+ chr11:66910842:+ GRK2 ENSG00000173020.11 protein_coding + + chr11:67266473-67286556:+ chr11:67282435:+ chr11:67033944-67054027:+ chr11:67049906:+ chr11:67157214,chr11:67157215 chr11:67282282,chr11:67282280 NA NA chr11:66924685,chr11:66924686 chr11:67049753,chr11:67049751 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |PH_domain(100%),Protein_kinase_domain(39%) |PH(100%),PK_Tyr_Ser-Thr(36%),Pkinase(49%) 0 1 6 3 289 ENST00000532436.5 ENST00000308595.10 downstream upstream mismatches(1) GTTGGGATTACAGCCGTGAGCCACTGCATCTGGCCTGTCTGTTCATTTCATAAACATCTGAGAGGGTCTTTGCTACAGGACTTCAGGAGCACTAGCATCG|GGGCACCCACGGGTACATGGCTCCGGAGGTCCTGCAGAAGGGCGTGGCCTACGACAGCAGTGCCGACTGGTTCTCTCTGGGGTGCATGCTCTTCAAGTTGCTGCGGGG___GCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACCGCATGACGCTGACGATG___GCCGTGGAGCTGCCCGACTCCTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Beta-adrenergic receptor kinase 1 AGC GRK BARK P25098 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6272 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1082 TRUE 404 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72570515:- chr16:72270180-72698913:- chr16:72604414:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 8 5 10 49 23 ENST00000641206.2 ENST00000657725.1 upstream downstream mismatches(3) CTCATACCAGTGCAAGCTCTGCCGCTACAACACCCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTGCACCTCAAGTGCAACGCCTGTGACTACTACACCAACAGCCTGGAGAAGCTGCGGCTGCACACGGTCAACTCCAGGCACGAGGCCAGCCTGAAGTTGTACAAG|AGGGGAAGGTATAAAATTTTCAAATGGAGGAGTATACCTGAACCTAATCATGGATGTGATTTTAT___A?ACAGATAAG...AAGAAGAGCTTAAACTG___CAATCATCAACAGAGAAGCTTTCTGCAACCAAAG___TGAAGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGGAAATATGC SYQCKLCRYNTQLKANFQLHCKTDKHVQKYQLVAHIKEGGKANEWRLKCVAIGNPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYK|rgrykifkwrsipepnhgcdfi?r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6273 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1082 TRUE 404 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72540611:- chr16:72270180-72698913:- chr16:72574510:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 1 1 6 49 36 ENST00000641206.2 ENST00000656218.1 upstream downstream mismatches(2) CCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTGCACCTCAAGTGCAACGCCTGTGACTACTACACCAACAGCCTGGAGAAGCTGCGGCTGCACACGGTCAACTCCAGGCACGAGGCCAGCCTGAAGTTGTACAAG|CAATCATCAACAGAGAAGCTTTCTGCAACCAAAG___TGAAGA...TAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGGAAATATGCCAACTGAACtTTGGACTACCAC___CGCCTGCCCCTGGCTCAGCGCCCGGTGCCAAC QLKANFQLHCKTDKHVQKYQLVAHIKEGGKANEWRLKCVAIGNPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYK|qssteklsatkvk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6274 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1082 TRUE 404 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72523415:- chr16:72270180-72698913:- chr16:72557314:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 1 0 6 49 50 ENST00000641206.2 ENST00000656218.1 upstream downstream mismatches(2) CCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTGCACCTCAAGTGCAACGCCTGTGACTACTACACCAACAGCCTGGAGAAGCTGCGGCTGCACACGGTCAACTCCAGGCACGAGGCCAGCCTGAAGTTGTACAAG|TGAAGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGGAAATATGCCAgCTGAACtTTGGACTACCAC___CGCCTGCCCCTGGCTCAGCGCCCGGTGCCAACAGAACACCTTTCAGGATCCACAGCAACGCAGACAAC___GGAACTCACAAGGGC QLKANFQLHCKTDKHVQKYQLVAHIKEGGKANEWRLKCVAIGNPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6275 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1082 TRUE 404 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72427457:- chr16:72270180-72698913:- chr16:72461356:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 0 1 3 49 42 ENST00000641206.2 ENST00000624829.4 upstream downstream mismatches(1) CCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTGCACCTCAAGTGCAACGCCTGTGACTACTACAC...CCAGCCTGAAGTTGTACAAG|CGCCTGCCCCTGGCTCAGCGCCCGGTGCCAACAGAACACCTTTCAGGATCCACAGCAACGCAGACAAC___GGAACTCACAAGGGCTTCGGTTCTCAAGAGGCC...GAGACAATgCCTTTCCTTCCCCTCACTACATTCACTGAATGTTCTGGATCAGTGCGTCTCACACCTTTGGATCTTATAAGCTACTTGGAAAA SLKLYK|rlplaqrpvptehlsgstatqtteltrasvlkr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6276 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1082 TRUE 404 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72555326:- chr16:72270180-72698913:- chr16:72589225:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 3 1 9 49 19 ENST00000641206.2 ENST00000570035.5 upstream downstream duplicates(1),mismatches(2) CTCATACCAGTGCAAGCTCTGCCGCTACAACACCCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTGCACCTCAAGTGCAACGCCTGTGACTACTACACCAACAGCCTGGAGAAGCTGCGGCTGCACACGGTCAACTCCAGGCACGAGGCCAGCCTGAAGTTGTACAAG|ATACAGATAAGCTGATTCTAAAACTTACAAGAATGGCAAAGAAACAAGAAGAGCTTAAACTG___TGAAGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTG...TGGAAAATATTTAATGAAGACAATGATGCTGACATCTCAAGTTAAAAG___GTTCTACAGAGAAGGCAAAGATTTTGAAGGCACAGGAGACTATCATAGATATT SYQCKLCRYNTQLKANFQLHCKTDKHVQKYQLVAHIKEGGKANEWRLKCVAIGNPVHLKCNACDYYTNSLEKLRLHTVNSRHEASLKLYK|iqis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6278 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 4 14 5 852 114 ENST00000506640.3 unknown upstream downstream duplicates(1),mismatches(3),multimappers(1) CTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGCCACACTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6280 ZNF644::RBMS3 ENSG00000122482.22::ENSG00000144642.22 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF644 ENSG00000122482.22 protein_coding - - chr1:90915298-91022272:- chr1:90982310:- chr1:91380855-91487829:- chr1:91447867:- RBMS3 ENSG00000144642.22 protein_coding + - chr3:28574791-30010391:+ chr3:29487699:- chr3:28616282-30051882:+ chr3:29529190:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 10 8 3 106 11 ENST00000361321.5 unknown upstream downstream none CGCGGGGACGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACT___GTTTGATTTAATTTTGGATGAGATCGTTCTTGCAGCAAGATGTTAATAAGACAAAATCTAG|GCTTTTTGTGAAGGTAAAATGGGGTTTACCTAACGTGCTGAGGACAGTGGCCGACACAGA___CCATCAGGTCATACCCATGAAGCTGAATAAATTCTGACTGTGCCC MLIRQNL|gfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6282 ZNF644::ENSG00000283563 ENSG00000122482.22::ENSG00000283563.1 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF644 ENSG00000122482.22 protein_coding - - chr1:90915298-91022272:- chr1:90982310:- chr1:91380855-91487829:- chr1:91447867:- ENSG00000283563 ENSG00000283563.1 protein_coding + - chr3:28349178-29767537:+ chr3:29487699:- chr3:28390669-29809028:+ chr3:29529190:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 10 8 3 106 11 ENST00000361321.5 unknown upstream downstream none CGCGGGGACGCCGCGTGCTCCCAACGTCGCCCCGGTTTGACGCACACGGCACCAAACT___GTTTGATTTAATTTTGGATGAGATCGTTCTTGCAGCAAGATGTTAATAAGACAAAATCTAG|GCTTTTTGTGAAGGTAAAATGGGGTTTACCTAACGTGCTGAGGACAGTGGCCGACACAGA___CCATCAGGTCATACCCATGAAGCTGAATAAATTCTGACTGTGCCC MLIRQNL|gfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6285 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 5 5 7 852 100 ENST00000506640.3 unknown upstream downstream mismatches(2),multimappers(4) GCGATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6287 ZNF786::SLC37A3 ENSG00000197362.15::ENSG00000157800.18 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF786 ENSG00000197362.15 protein_coding - - chr7:149069641-149090782:- chr7:149090623:- chr7:148766733-148787874:- chr7:148787715:- SLC37A3 ENSG00000157800.18 protein_coding - + chr7:140293693-140404433:- chr7:140341873:+ chr7:139993493-140104233:- chr7:140041673:+ chr7:149090116,chr7:149090120 chr7:140334068,chr7:140334064 NA NA chr7:148787208,chr7:148787212 chr7:140033868,chr7:140033864 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 3 10 0 23 19 ENST00000491431.2 unknown upstream upstream none GGGAGTCAGTGCGCAGCAGGGCAGGTTCCTGCGGAGCCGCCGGAGACGGTCGGGTTTGCCAGGGCCGGGCGGGACCGCGGGGACCATGGCGGAGCCGCCTCGG|GTGAAGACGTCTGAACTGATGGCTGGGAGCATTTTTCGATTCCCGCTCCAGGGCATGATCAG___AGCAACAGAAGCATGGTGGAGCAGAGCCATGTGCCGTACCTGTAACAGTCATCAGAAGGGCATTGATGGACTTATCATTTGGAGAACCTGTGAGGGAAGACACAGACAAACCATGGTGGCTTGAAAAGCAGACTCCACGTGCCTCTGCCAACC MAEPPR|vktselmagsifrfplqgmirateawwsramcrtcnshqkgidgliiwrtcegrhrqtmva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6288 KDM4C::RIC1 ENSG00000107077.19::ENSG00000107036.12 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 597 TRUE 1084 TRUE 405 KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:7015929:+ chr9:6720863-7175648:+ chr9:7015929:+ RIC1 ENSG00000107036.12 protein_coding + + chr9:5629025-5776557:+ chr9:5713896:+ chr9:5629025-5776557:+ chr9:5713896:+ chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none JmjC_domain__hydroxylase(100%),PHD-finger(100%),jmjN_domain(100%)|RIC1(100%) JmjC(100%),JmjN(100%),PHD_2(100%)|RIC1(100%) 5 4 4 200 154 ENST00000381309.8 ENST00000414202.7 downstream upstream duplicates(1),mismatches(1) CCTTCCTTGAAGAGGATGGAACAAGTCTCCTTATTTCCTGTGCAAAGTGCTGCGTACGGGTTCATGCAA___GTTGTTATGGTATTCCTTCTCATGAGATCTGTGATGGATGGCTGTGTGCCCGGTGCAAAAGAAATGCGTGGACAGCA|AGGAAGTCCACAAATGAAGGGGACACCCCATTTTAAGGAAGAACAGTGTGCTCCAGCATTAAATTTGGAGATGAGGAAAATACTGGATTTACAAGCACCCATCATGAG___TTTGCAGTCTGTGTTGGAAGATCTCCTGGTTGCTACTTCTGATGGACTTCTTCATCTTATTCACTGGGAAGGAAT FLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTA|rkstnegdtpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6289 KDM4C::RIC1 ENSG00000107077.19::ENSG00000107036.12 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1084 TRUE 405 KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:7015929:+ chr9:6720863-7175648:+ chr9:7015929:+ RIC1 ENSG00000107036.12 protein_coding + + chr9:5629025-5776557:+ chr9:5732388:+ chr9:5629025-5776557:+ chr9:5732388:+ chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none JmjC_domain__hydroxylase(100%),PHD-finger(100%),jmjN_domain(100%)|RIC1(100%) JmjC(100%),JmjN(100%),PHD_2(100%)|RIC1(100%) 0 0 0 200 133 ENST00000381309.8 ENST00000414202.7 downstream upstream low_entropy(1) GGAAAGACTAAGCCCCTCATACCAGAGATGTGTTTTATTTATAGTGAAGAAAATATAGAATATTCTCCACCCAATGCCTTCCTTGAAGAGGATGGAACAAG...CGTGGACAGCA|CAGCTTCATGGAGTTTGGCCACAAGATGTTGTTGACGGAACGTGTGTAGCAGTAAATAACAAGTATCGACTAATGGCATTTGGCTGTGTG WTA|QLHGVWPQDVVDGTCVAVNNKYRLMAFGC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6290 FBXL20::ACACA ENSG00000108306.13::ENSG00000278540.5 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 598 FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39343180:- chr17:37408916-37558776:- chr17:37499433:- ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37263894:- chr17:35441927-35766927:- chr17:35620797:- chr17:39314336,chr17:39314343 chr17:37270424,chr17:37270428 NA NA chr17:37470589,chr17:37470596 chr17:35627315,chr17:35627319 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none F-box-like(19%)|Acetyl-CoA_carboxylase__central_region(100%),Biotin-requiring_enzyme(100%),Biotin_carboxylase_C-terminal_domain(100%),Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(73%),Carboxyl_transferase_domain(100%) F-box(0%),F-box-like(0%)|ACC_central(100%),ATP-grasp(30%),Biotin_carb_C(100%),Biotin_lipoyl(100%),CPSase_L_D2(34%),Carboxyl_trans(100%),Dala_Dala_lig_C(30%) 5 4 2 47 212 ENST00000264658.11 ENST00000616317.5 upstream downstream duplicates(1),mismatches(2) CGACA___...GTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGG...AGCAGGTTTGAG___ATGTTCTCAAATAGTGATGAAGCTGTAATCAATAAAAAACTTCCCAAAGAACTCCTGTTACG|GTTCAAGCTGAAGTTCCTGGATCTCCCATATTTGTGATGAGACTAGCCAAACAATCTCGTCATCTGGAGGTGCAGATCTTAGCGGACCAATATGGCAATGCTATCTCTTTGTTTGGTCGTGATTGCTCTGTACAACGCAG...A SRFEMFSNSDEAVINKKLPKELLLr|fklkfldlpyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6293 MYO9B::AKAP10 ENSG00000099331.14::ENSG00000108599.15 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17102557:+ chr19:17186587-17325346:+ chr19:17213367:+ AKAP10 ENSG00000108599.15 protein_coding - - chr17:19904302-19978343:- chr17:19947505:- chr17:19807615-19881656:- chr17:19850818:- chr19:17111383,chr19:17111393,chr19:17111410,chr19:17111433,chr19:17111435 chr17:19955254,chr17:19955254,chr17:19955252,chr17:19955254,chr17:19955254 NA NA chr19:17222193,chr19:17222203,chr19:17222220,chr19:17222243,chr19:17222245 chr17:19858567,chr17:19858567,chr17:19858565,chr17:19858567,chr17:19858567 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Myosin_head_(motor_domain)(19%),Ras_association_(RalGDS/AF-6)_domain(100%)|Regulator_of_G_protein_signaling_domain(98%) Myosin_head(0%),RA(100%)|RGS(71%) 2 3 2 67 187 ENST00000595618.5 ENST00000225737.11 downstream downstream none CAAGTACGTGCATATGCAGCTGGgGGCGCAGGCCACAGCCACCCGGCGCCTAGTGGAGCGgGGCCTCCTGCCACGGCAGCAGGCGGACTTTGATGACCTG...CCCAAGTACGTGAAGATGTATGAGAACCAGCAGCTGGGCAAGCTGGAGCCACACGTCTTCGCGCTGGCCGACGTGGCCTACTACACCATGCTCAGGAAGCGCGTGAACCAGTGCATCGTGATCTCGGGTGAGAGCGGCTCCGGC...CGCCCTCAGCCAGAAGGGCTACGCCAGCGGCGTCGAGAGGACCATCCTGGGTGCTGGCCCTGTGCTGGAG|GTATAGAACAAGATGCAGTGAATACTTTTACCAAATATATATCTCCAGATGCTGCTAAACCAATACCAATTACAGAAGCAATGAGAAATGACATCATAG___CAAGGATTTGTGGAGAAGATGGACAGGTG ALSQKGYASGVERTILGAGPVLE|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6294 PAPOLA::HECTD2 ENSG00000090060.19::ENSG00000165338.17 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ HECTD2 ENSG00000165338.17 protein_coding + - chr10:91409280-91514829:+ chr10:91480709:- chr10:93169037-93274586:+ chr10:93240466:- chr14:96503420,chr14:96503421 chr10:91487053,chr10:91487052 NA NA chr14:96969757,chr14:96969758 chr10:93246810,chr10:93246809 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 3 1 455 17 ENST00000216277.13 unknown downstream downstream none GGGCGCCATGTTAGGACGAAGGGGAAGGAGGAGAAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTC?GTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|GTTCATTCCTAAAGTGATGTAGAAATGTCTGTAAATCAAATCATACTTTAAATACATCCAGTATGCTTCTAACAGAAAGAATCATGAAAA...CCCGTGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAAGCATCCACCACCGTGCCTGGCTACTTTTTGTgTTTTTAGCAGAGATAG MPl|fipkvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6298 CCDC18-AS1::BCAR3 ENSG00000223745.8::ENSG00000137936.18 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC18-AS1 ENSG00000223745.8 lncRNA - - chr1:93262186-93346025:- chr1:93324635:- chr1:93727743-93811582:- chr1:93790192:- BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93592393:- chr1:94027298-94312706:- chr1:94057950:- chr1:93319507 chr1:93628083 NA NA chr1:93785064 chr1:94093640 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RasGEF_domain(100%),SH2_domain(100%) |RasGEF(100%),SH2(100%) 2 0 2 76 52 ENST00000661111.1 ENST00000370244.5 upstream downstream none GAACAACTCTTCTTCATAGTTACGTTATACTGCCCCTGCATTGTTGGTATTGAAA___ATAACTGATACCGTGgTTCCAGAAGATTTTTCTAACAGTGTTTGCA...TTTGAGAGGCCGAG___GCACCATGCTGGGAGATAAGGATCCAACATAAGACAAACAGTGCTGATGCTTTTGGAAAGCTCATATTCAAGCTGGGGAGACAAACAACATACAA|TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCCGAGAAACTGAAGAAGGAGCTGGAGGAGGAGCTGCTCCTGAGCAGCGAGGACCTGCGCAGCCATGCCTGGTACCACGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6301 KDM6A::HEPH ENSG00000147050.18::ENSG00000089472.18 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM6A ENSG00000147050.18 protein_coding + + chrX:44873188-45112779:+ chrX:45020730:+ chrX:44732434-44972024:+ chrX:44879975:+ HEPH ENSG00000089472.18 protein_coding + - chrX:66162671-66268867:+ chrX:66238537:- chrX:65382513-65488709:+ chrX:65458379:- chrX:45023749 chrX:66265028 NA NA chrX:44882994 chrX:65484870 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Tetratricopeptide_repeat(65%)| TPR_1(100%),TPR_16(95%)| 0 1 1 68 4 ENST00000611820.5 unknown downstream downstream none GGtAATTAAAGCATTTCAGGAGGTGCTTTATGTTGATCCCAGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTTATGTTCAAAGTGAACACAGACTATGAGTCTAGTTTAAAG|GGTCTCACTTTGTCATGCAGGCTGGAGTGCAGTGGCATGATCATAGCTACATGCAACCTTGAATTCCTGGGCTCAAGGGATCCTCGCACTTCAGCCACCCAAGTTCAAC...GGAATTTGCcCCCACCAGAACTGCCTaACAAGAGCTCCTGAAGGAAACACTAAATATGGAAAGGAAAGACCATTACCAGCCACTCCAGAAAAATACTGAAG vIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLK|gltlscrlecsgmiiatcnleflgsrdprtsatqvq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific demethylase 6A, UTX 1 Yes renal cell carcinoma, bladder carcinoma, oesophageal SCC, MM, medulloblastoma, T-ALL, other tumour types epithelial, leukaemia_lymphoma oncogene, TSG large_deletion, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 6312 NFAT5::WWP2 ENSG00000102908.23::ENSG00000198373.13 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1089 TRUE 406 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69647167:+ chr16:69598997-69738569:+ chr16:69681070:+ WWP2 ENSG00000198373.13 protein_coding + + chr16:69762328-69941741:+ chr16:69888039:+ chr16:69796231-69975644:+ chr16:69921942:+ chr16:69650070 chr16:69877204 NA NA chr16:69683973 chr16:69911107 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion/read-through medium none |HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) |HECT(100%),WW(100%) 3 5 6 117 174 ENST00000567990.5 ENST00000359154.7 downstream upstream low_entropy(1) GATTTGCCTCTGAAGCAGGGAGTGTCTGCATTAAAAATGACCTGTAGTTCTCTGCTTCATAG___ATGCTTCTTCAGCTCCCTCCTCTTCCTCCATGGGCGGTGCTTGCAGCTCCTTTACCACCTCTTCCAGCCCTACCATTTATTCTACCTCAGTCACCGACAGCAAGGCTATGCAAGTGGAGAGCTGCTCCTCAGCCGTGGGG|TGAATGATGAACCCACAACAGCCACTGATCCCGAAGAACCTTCCGTTGTTGGTGTGACGTCCCCACCTGCTGCACCCTTGAGTGTGACCCCGAATCCCAACACGACTTCTCTCCCTGCCCCAGCCACACCGGCTGAAGGAGAGGAACCCAGCACTTCGGGTACACAGCAGCTCCCAGCGGCTGCCCAGGCCCCCGACGCTCTGCCTGCTGG___ATGGGAACAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-140 chr16:69933081-69933180:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 69655799 FALSE 69888039 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6313 NFAT5::WWP2 ENSG00000102908.23::ENSG00000198373.13 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1089 TRUE 406 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69647586:+ chr16:69598997-69738569:+ chr16:69681489:+ WWP2 ENSG00000198373.13 protein_coding + + chr16:69762328-69941741:+ chr16:69888039:+ chr16:69796231-69975644:+ chr16:69921942:+ chr16:69650070 chr16:69877204 NA NA chr16:69683973 chr16:69911107 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) |HECT(100%),WW(100%) 2 1 6 82 174 ENST00000349945.7 ENST00000359154.7 downstream upstream none GGAATCTGAGCAGAGCTGCAGTATGTGGATGGAGGATTCCCCCTCCAACTTCAGTAACATGAGCACCAGTTCCTACAATGATAACACTGAGGTACCTCGTA...CTAATATGGATATATTTGATGCCGACAGTGCCAAAGCACCTCACTATGTGCTTTCTCAGCTTACCACGGACAACAAAGGCAACTCAAAAGCGGGAAATGG|TGAATGATGAACCCACAACAGCCACTGATCCCGAAGAACCTTCCGTTGTTGGTGTGACGTCCCCACCTGCTGCACCCTTGAGTGTGACCCCGAATCCCAACACGACTTCTCTCCCTGCCCCAGCCACACCGGCTGAAGGAGAGGAACCCAGCACTTCGGGTACACAGCAGCTCCCAGCGGCTGCCCAGGCCCCCGACGCTCTGCCTGCTGG___ATGGGAACAGCGAG NMDIFDADSAKAPHYVLSQLTTDNKGNSKAGNg|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-140 chr16:69933081-69933180:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 69655799 FALSE 69888039 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6314 NFAT5::WWP2 ENSG00000102908.23::ENSG00000198373.13 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1089 TRUE 406 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69626528:+ chr16:69598997-69738569:+ chr16:69660431:+ WWP2 ENSG00000198373.13 protein_coding + + chr16:69762328-69941741:+ chr16:69888039:+ chr16:69796231-69975644:+ chr16:69921942:+ chr16:69650070 chr16:69877204 NA NA chr16:69683973 chr16:69911107 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) |HECT(100%),WW(100%) 1 3 1 64 174 ENST00000354436.6 ENST00000359154.7 downstream upstream none CTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG___AATCTGTCTATGATCTTCTCCCAAAGGAGTTAC...GAGGCAGGCTCGCCTCCTCCAGCTGTTGTTGCTGCTG|TGAATGATGAACCCACAACAGCCACTGATCCCGAAGAACCTTCCGTTGTTGGTGTGACGTCCCCACCTGCTGCACCCTTGAGTGTGACCCCGAATCCCAACACGACTTCTCTCCCTGCCCCAGCCACACCGGCTGAAGGAGAGGAACCCAGCACTTCGGGTACACAGCAGCTCCCAGCGGCTGCCCAGGCCCCCGACGCTCTGCCTGCTGG___ATGGGAACAGCG EAGSPPPAVVAA|vNDEPTTATDPEEPSVVGVTSPPAAPLSVTPNPNTTSLPAPATPAEGEEPSTSGTQQLPAAAQAPDALPAGWEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-140 chr16:69933081-69933180:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 69655799 FALSE 69888039 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6316 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1090 TRUE 407 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21873552,chr9:21873551 chr9:22031734,chr9:22031730 NA NA chr9:21873551,chr9:21873550 chr9:22031733,chr9:22031729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 4 2 5 214 23 ENST00000644715.2 ENST00000650946.1 downstream upstream none AAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTT...CCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACAtATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTA...CATTCATAATTTAAACAGAAGCCTACGAAGAACTCATAAATTAAAAGAAGATAATCTTTTCACAAG___GTGATGGAGGCTTTTTATTTTGCCACAAAACCAC SFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6317 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1090 TRUE 407 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21866842:+ chr9:21802635-21937650:+ chr9:21866841:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22032674:+ chr9:21994138-22128102:+ chr9:22032673:+ chr9:21873552,chr9:21873551 chr9:22031734,chr9:22031730 NA NA chr9:21873551,chr9:21873550 chr9:22031733,chr9:22031729 NA NA sense sense unknown 3'UTR exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 3 1 7 19 7 ENST00000644715.2 ENST00000428597.6 downstream upstream none GGAAGGAGCACGAGGAAGCA___...AAACCCTCCATAACCTGAAG...___AAAAAATCTGCTGGAATGGCACTGAATTTTTAGGTCGATTTGGGAAGAATTGACAATATTGAACCTTTCAATCGATGGACATG|GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAgTTAAAAACACTGGGCATGTGGAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6318 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1090 TRUE 407 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21873552,chr9:21873551 chr9:22031734,chr9:22031730 NA NA chr9:21873551,chr9:21873550 chr9:22031733,chr9:22031729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 3 3 221 23 ENST00000644715.2 ENST00000650946.1 downstream upstream none GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACAtATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGG VLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6319 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1090 TRUE 407 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22032674:+ chr9:21994138-22128102:+ chr9:22032673:+ chr9:21873552,chr9:21873551 chr9:22031734,chr9:22031730 NA NA chr9:21873551,chr9:21873550 chr9:22031733,chr9:22031729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 5 214 7 ENST00000644715.2 ENST00000428597.6 downstream upstream none AATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCC ICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|aiystdlssiplavldvkmifpagi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6326 ITGA3::ENSG00000248172 ENSG00000005884.18::ENSG00000248172.1 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1092 FALSE NA ITGA3 ENSG00000005884.18 protein_coding + + chr17:50055968-50090481:+ chr17:50081408:+ chr17:48133332-48167845:+ chr17:48158772:+ ENSG00000248172 ENSG00000248172.1 lncRNA + + chr17:49996889-50016844:+ chr17:50016398:+ chr17:48074253-48094208:+ chr17:48093762:+ chr17:50083880 chr17:50005325 NA NA chr17:48161244 chr17:48082689 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none FG-GAP_repeat(100%),Integrin_alpha(100%)| FG-GAP(100%),FG-GAP_3(100%),Integrin_alpha2(100%)| 1 0 1 625 4 ENST00000320031.13 ENST00000511867.1 downstream upstream none GAAGGCACGAGTGTGGAACAGCACCTTCATCGAG___GATTACAGAGACTTTGACCGAGTCCGGGTAAATGGCTGGGCTACCCTATTCCTCCGAACCAGCATCCCCACCAT...GAACAAGACCACGTGG|GACTTGGGTCATTGGTAAAAGTCTAGTCCCAGGATACAATGAGCTGAAGTGGTAACCAGTGCACAGTGGACCTGCTTTGCAGCTTGGGCATGCCACGCAAATGAACAGGACTTATCATTTGTTCCCTTGATTGCTCTGAGACTGAGTAAAGTTACTCAGTTTCCTGATGCCAAGG NKTTW|dlghw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6330 EI24::ENSG00000255087 ENSG00000149547.15::ENSG00000255087.6 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EI24 ENSG00000149547.15 protein_coding + + chr11:125569280-125584684:+ chr11:125575408:+ chr11:125439176-125454579:+ chr11:125445304:+ ENSG00000255087 ENSG00000255087.6 lncRNA + + chr11:127021736-127172363:+ chr11:127122321:+ chr11:126891631-127042258:+ chr11:126992216:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron deletion medium none Etoposide-induced_protein_2.4_(EI24)(0%)| EI24(0%)| 0 2 1 2236 3 ENST00000278903.11 unknown downstream upstream none ATCAAAGACTCCATCTGGGGTATTTGTACCATCTCAAAGCTAGATGCTCGAATCCAGCAAAAGAGAGAGGAGCAGCGTCGAAGAAGGGCAAGTAGTGTCTTGGCACAGAGAAGAGCCCAGAGTATAGAGCGGAAGCAAGAGAG|GTCCGAACAGCCCAAGGTGTTAAGAAAGAGAAAGGCAGATTGGATTTCAGCTCTACCTTCTGATCAGTTTTACCTAGAAATCAC IKDSIWGICTISKLDARIQQKREEQRRRRASSVLAQRRAQSIERKQEr|seqpkvlrkrkadwisalpsdqfylei NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6334 ANKFY1::ZZEF1 ENSG00000185722.18::ENSG00000074755.15 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1093 TRUE 408 ANKFY1 ENSG00000185722.18 protein_coding - - chr17:4163821-4263995:- chr17:4249090:- chr17:4067115-4167290:- chr17:4152385:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4025118:- chr17:3907739-4046324:- chr17:3928412:- chr17:4244552,chr17:4244556 chr17:4028642,chr17:4028643 NA NA chr17:4147847,chr17:4147851 chr17:3931936,chr17:3931937 NA NA sense sense stop-codon intron CDS/splice-site deletion/read-through low none none none 4 2 1 7 81 ENST00000341657.9 ENST00000381638.7 upstream downstream duplicates(2) CCGGGCCAGACATGGCGGAAG___AGTTGAGTAGTGCCCCAGAGACTGTATGGCTCCCAAAGCCTAAAATATTTGCTATGTGGCCCTGTACGGAAAGTATGCCAACTCCTGACCTAGAAGGAAGAGTGTTCTAAAAATCATTCTTGGTTTCTCTTCTGACTGTGCCATATAACTTCTGAAGAG|TGAAGGACTACCAGCTGGTCCAGAAGGGAGGAGGACAAGAGTGTGGTGACTCTCGGGCCCAGC...AAAGCAGCATGtACAGCCATTGTCCCGAGGCAGTAGAAGCAACTTGGGTCCTGTCCCTGGCCCTGAAAGGATTGTATAAAACACTAAAG___GCTCACGGTTTTGAGGAGATCCGTGCTACTTTCCTTCAGACCGATTTGCTGAAGTTGCTGGTGAAAAAGTGCAGCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6335 ANKFY1::ZZEF1 ENSG00000185722.18::ENSG00000074755.15 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1093 TRUE 408 ANKFY1 ENSG00000185722.18 protein_coding - - chr17:4163821-4263995:- chr17:4263932:- chr17:4067115-4167290:- chr17:4167227:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4022828:- chr17:3907739-4046324:- chr17:3926122:- chr17:4244552,chr17:4244556 chr17:4028642,chr17:4028643 NA NA chr17:4147847,chr17:4147851 chr17:3931936,chr17:3931937 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none none none 0 6 0 16 100 ENST00000341657.9 ENST00000381638.7 upstream downstream none CGAGGTTGCAGGCAGTGCCGGGCCAGACATGGCGGAAG|GCTCACGGTTTTGAGGAGATCCGTGCTACTTTCCTTCAGACCGATTTGCTGAAGTTGCTGGTGAAAAAGTGCAGCAAAGGGACTGGCTTTAGTAAAACGTGGCTCCTCCGGGACCTGGAA___ATTTTGTCCATCATGCTGTACTCCTCAAAAAAGGAGATCAACGCTTTGGCTGAGCACGGAGACCTAGAGCTGGATGAGCGAGGGGACCGAG...CCCAGAGCAGAAAAAGCTGGACCCCCTTGAGGGCCTGGATGAGCCCACCAGAATATGTTTCTTG___ATGGCTCATGATGCCCTCAATGCCCCTCTGCACATT MAE|gsrf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6336 ANKFY1::ZZEF1 ENSG00000185722.18::ENSG00000074755.15 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1093 TRUE 408 ANKFY1 ENSG00000185722.18 protein_coding - - chr17:4163821-4263995:- chr17:4263932:- chr17:4067115-4167290:- chr17:4167227:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4025118:- chr17:3907739-4046324:- chr17:3928412:- chr17:4244552,chr17:4244556 chr17:4028642,chr17:4028643 NA NA chr17:4147847,chr17:4147851 chr17:3931936,chr17:3931937 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none none none 0 4 0 16 81 ENST00000341657.9 ENST00000381638.7 upstream downstream duplicates(3),mismatches(1) CGGGCCAGACATGGCGGAAG|TGAAGGACTACCAGCTGGTCCAGAAGGGAGGAGGACAAGAGTGTGGTGACTCTCGGGCCCAGCTGAGCCAGTACTCCCAGCACTTTGCCTTTATCGCC...CGAGGCAGTAGAAGCAACTTGGGTCCTGTCCCTGGCCCTGAAAGGATTGTATAAAACACTAAAG___GCTCACGGTTTTGAGGAGATCCGTGCTACTTTCCTTC...GCAAAGGGACTGGCTTTAGTAAAACGTGGCTCCTCCGGGACCTGGAA___ATTTTGTCCATCATGCTGTACTCCTCAAAAAAGGAGATCAACGCTTTGGCTGAG MAE|vKDYQLVQKGGGQECGDSRAQLSQYSQHFAFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6337 HEATR5B::STRN ENSG00000008869.12::ENSG00000115808.13 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HEATR5B ENSG00000008869.12 protein_coding - - chr2:36968383-37084372:- chr2:37019809:- chr2:37195526-37311515:- chr2:37246952:- STRN ENSG00000115808.13 protein_coding - - chr2:36837698-36966536:- chr2:36916151:- chr2:37064841-37193679:- chr2:37143294:- chr2:37016550,chr2:37016552 chr2:36920017,chr2:36920016 NA NA chr2:37243693,chr2:37243695 chr2:37147160,chr2:37147159 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Striatin_family(49%),WD_domain__G-beta_repeat(100%) |Striatin(21%),WD40(100%) 2 1 1 32 69 ENST00000233099.6 ENST00000263918.9 upstream downstream none AGAATTTCCAGGTCATGTGATACTGGAGCAGTATCAGGCTAAT___GTGGGAGCTGCTCTAAGACCAGCCTTTTCACAAGATACACCATCAGATATAATAGCGAAAGCTTGCCAG|AGCCAAATACCACAAGTTGAAATACGGGACAGAATTGAATCAGGGAGATATGAAGCCTCCAAGCTATGATTCTG___ATGAAGGTAATGAAACAGAAGTGCAGCCACAACAAAACAGCC...ATCTACAGGAGGTGGGTTATACAGATACTATTCTAGATGTGAAATCTAAACGAGTGCGAGCTTTGTTGGGCTTTTCAAGTGATGTCACGGACAGGGAAGAT EFPGHVILEQYQANVGAALRPAFSQDTPSDIIAKACQ|sqipqveirdriesgryeaskl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE striatin, calmodulin binding protein 1 anaplastic thyroid, papillary thyroid, lung epithelial fusion translocation 6348 LINC01564::AGBL4 ENSG00000235899.4::ENSG00000186094.18 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01564 ENSG00000235899.4 lncRNA + + chr6:53616471-53707024:+ chr6:53621487:+ chr6:53481269-53571822:+ chr6:53486285:+ AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:49045800:- chr1:48998526-50489626:- chr1:49511472:- chr6:53683703,chr6:53683704,chr6:53683702 chr1:49178457,chr1:49178456,chr1:49178453 NA NA chr6:53548501,chr6:53548502,chr6:53548500 chr1:49644129,chr1:49644128,chr1:49644125 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Cytosolic_carboxypeptidase_N-terminal_domain(33%),Zinc_carboxypeptidase(100%) |BEN(100%),Pepdidase_M14_N(0%),Peptidase_M14(100%) 1 0 0 39 3 ENST00000668029.1 ENST00000371839.6 downstream downstream none CATGAAGACACTGAAAAGTGATGAATCCACATAACCATGACACTGGAAATGAAGTTTGAGTGGCAGTCAGAATCTGGGAGGAAGCATTGCTAAGTGAAAAT...CGTGATCCGGGAACACAAGACCTTTACCAACCAAAAAAGTGGATAGCTGTTCTTCTGCTGTGAAGGTTAATAAAG|GCAAAGGCTGCCACCCAAAAATGTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6350 ENSG00000263551::ENSG00000265554 ENSG00000263551.6::ENSG00000265554.3 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000263551 ENSG00000263551.6 lncRNA + + chr18:976589-1310018:+ chr18:976895:+ chr18:976590-1310019:+ chr18:976896:+ ENSG00000265554 ENSG00000265554.3 lncRNA + + chr18:10085838-10144406:+ chr18:10144157:+ chr18:10085835-10144403:+ chr18:10144154:+ chr18:1032232,chr18:1032232 chr18:10125581,chr18:10125578 NA NA chr18:1032233,chr18:1032233 chr18:10125578,chr18:10125575 NA NA sense sense unknown exon/splice-site exon/splice-site deletion low none none none 0 1 0 121 16 ENST00000580781.5 ENST00000685786.1 downstream upstream mismatches(1) CGGTACCTCAGATGGAAATGCAGAAATCACCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCCAGTTGTGTGGTTTTAA|ATCTAGGCACAGAGGTCACTCTGAGCTTCCATTTGGACAGCTGCCTGTTCGTGGGAAGATCACCAAGCTCcTAACCCAGGAAGGGATGCTGTGCTGCATATTGGCGTTGTTGTGAGGTCAAGAGAGATTTCATCCCTGCTGTCCTTCCTCAGATGGGTCATTATGTCTGGATTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6353 TANC1::CRLF1 ENSG00000115183.15::ENSG00000006016.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 602 FALSE NA FALSE NA TANC1 ENSG00000115183.15 protein_coding + + chr2:158968640-159232659:+ chr2:159150556:+ chr2:159825152-160089170:+ chr2:160007067:+ CRLF1 ENSG00000006016.12 protein_coding - - chr19:18572220-18607741:- chr19:18594434:- chr19:18683030-18718551:- chr19:18705244:- chr2:159155743,chr2:159155737 chr19:18596522,chr19:18596528 NA NA chr2:160012254,chr2:160012248 chr19:18707332,chr19:18707338 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none |DNA_repr_REX1B(100%),Rad60-SLD(100%),Rad60-SLD_2(100%),Ribosomal_L40e(100%),Ubiquitin_2(100%),ubiquitin(100%) 18 14 26 135 83 ENST00000263635.8 ENST00000392386.8 downstream downstream duplicates(2),mismatches(3) GCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGACAAAAATGAAACCATG___TGCACAGCTCTGAGTCAAGGCATCAGTCCTTGCTCCACACTAACAAGCAGCACCGCATCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG|AGCGCCCGGGCCCGGGCGGCGGGGCGTGCGAACCGCGGGGCGGAGAGCCGAGCTCGGGGCCGGTGCGGCGCGAGCTCAAGCAGTTCCTGGGCTGGCTCAAGAAGCACGCGTACTGCTCCAACCTCAGCTTCCGCCTCTACGACCAGTGGCGAGCCTGGATGCAGAAGTCGCACAAGACCCGCAACCAG___GACGAGGGGATCCTGCCCTCGGGCAGACGGGGCACGGCGAGAG___GTCCTGCCAGA ADNEPSCSPAAQELLTRLGFLLGEGIPSATHITIEDKNETMCTALSQGISPCSTLTSSTASPSTDSPCSTLNSCVSKTAANKSPCETISSPSSTLESKDSGII|eRPGPGGGACEPRGGEPSSGPVRRELKQFLGWLKKHAYCSNLSFRLYDQWRAWMQKSHKTRNQDEGILPSGRRGTARGPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6354 OSBPL11::ADCY5 ENSG00000144909.8::ENSG00000173175.16 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL11 ENSG00000144909.8 protein_coding - - chr3:125528858-125595497:- chr3:125560379:- chr3:125247702-125314341:- chr3:125279223:- ADCY5 ENSG00000173175.16 protein_coding - + chr3:123282296-123449090:- chr3:123385842:+ chr3:123001143-123167937:- chr3:123104689:+ chr3:125553746,chr3:125553749 chr3:123382345,chr3:123382342 NA NA chr3:125272590,chr3:125272593 chr3:123101192,chr3:123101189 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Oxysterol-binding_protein_(3%),PH_domain(100%)| Oxysterol_BP(0%),PH(100%),PH_8(100%)| 18 16 17 174 59 ENST00000296220.6 unknown upstream upstream duplicates(5),mismatches(3) AAATGGAGCTGACCAGCCCTTTGCAACTGATCAGAGTAAGCCGGTGGCAGTCCCAGAAGAGCAGCCTGTTGCAGAATCTGGACTATTAGCGAGG___GAGCCTGAAGAAATAAATGCAGATGATGAGATAGAGGATACATGTGACCACAAAGAGGATGACCTGGGAGCTGTAGAAGAACAACGTAGTGTCATCCTACATCTCTTGTCACAGCTTAAGCTGGGCATGGATTTAACAAGA|TCTACAAAAAAGACTTCTTTCGTGGACAGGCTGAGAATCATCGTCACCACCATCACCCTGTATCTAATCCCAAGACGGCTCTCCAGG___GCTGCAGAAACTTTCTTCCCACGCTGCCTGCCAGCGCCCCCGACCCCAgCCCGTTTCCTGTAACTTCTCCTAGATATAGCCCAGCTGGGTCTTCTCATCATAATGCAAATGACCCAAGGTCTTAAGCCCGTCAGCGTGGAAGGGAACCTCCAGCAGAAACCG NGADQPFATDQSKPVAVPEEQPVAESGLLAREPEEINADDEIEDTCDHKEDDLGAVEEQRSVILHLLSQLKLGMDLTR|stkktsfvdrlriivttitlyliprrlsraaetffprclpapptparfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6359 AGAP1::EXOSC3 ENSG00000157985.20::ENSG00000107371.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1096 TRUE 409 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ EXOSC3 ENSG00000107371.14 protein_coding - - chr9:37759234-37832117:- chr9:37791242:- chr9:37759231-37832114:- chr9:37791239:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Ras_family(96%)|KH_domain(100%) Ras(46%)|KH_6(100%),tRNA_m1G_MT(100%) 11 12 20 260 51 ENST00000304032.13 unknown downstream downstream mismappers(1) ACAGAGCTATCTGCTGCTGATCAGAGATGAAGGGGGCCCCCCGGAGGCGCAG___TTTGCCATGTGGGTGGACGCTGTTATATTTGTCTTCAGCTTGGAGGATGA...GTTTCCAGACCGTTTACCACTACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|GTAGAAGGCCCTGAAGAGGCGTTTCAGGAGGAATGGGTTTTGCTTCCTGGTCCAGTTGTGCTCACTGGCACACTTCTGCAGCACAGCAGCTTCTCCAGCATCTGTTCCTGCTTTGATTGGTGGCCAGAAACACTCAGCAGCCAGCAGTGTTCCTTAGCACCCTATTGGGCAGTTTTATAGCAGAGGCTTCCAGGAGACCCCTCCCCATGAATACGTTTCCTCAGCAACGTAAAAGTGCCAGAAAATTCTAGAGGGTGGATTTATAGGAAGTTCCACTGGAAGATTCCCAaTGACTTCTTGCCATTTAATGAGCCAtAGCCACACTCTCTTCAAAAG FQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|grrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6360 AGAP1::EXOSC3 ENSG00000157985.20::ENSG00000107371.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 605 TRUE 1096 TRUE 409 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ EXOSC3 ENSG00000107371.14 protein_coding - - chr9:37759234-37832117:- chr9:37784063:- chr9:37759231-37832114:- chr9:37784060:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ras_family(96%)|KH_domain(100%) Ras(46%)|KH_6(100%),tRNA_m1G_MT(100%) 4 5 6 260 484 ENST00000304032.13 ENST00000327304.10 downstream downstream duplicates(1),mismatches(1) ACCGTTTACCACTACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|TATGTTCCAGTAAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTTGAAGGTGCAACTAAAAGAAACAGACCAAATGTGCAG___GTTGGAGATCTCATCTATGGCCAaTTTGTGGTTGCTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGGAATGGGT TVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|vcsskrrpcdwhsds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6361 AGAP1::EXOSC3 ENSG00000157985.20::ENSG00000107371.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1096 TRUE 409 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235744839:+ chr2:236402687-237040437:+ chr2:236653483:+ EXOSC3 ENSG00000107371.14 protein_coding - - chr9:37759234-37832117:- chr9:37784063:- chr9:37759231-37832114:- chr9:37784060:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Ras_family(67%)|KH_domain(100%) Ras(40%)|KH_6(100%),tRNA_m1G_MT(100%) 0 1 1 335 484 ENST00000304032.13 ENST00000327304.10 downstream downstream none GTTTACCACTACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG|TATGTTCCAGTAAAAGGAGACCATG...TCTATGGCCAaTTTGTGGTTGCTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGGAATGGGTGTCATTGGACAGGA VYHYYSRMANYRNTSEIPLVLVGTQ|vcsskrrp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6364 AGAP1::ENSG00000255872 ENSG00000157985.20::ENSG00000255872.3 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1098 TRUE 410 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ ENSG00000255872 ENSG00000255872.3 protein_coding - - chr9:37588413-38068687:- chr9:37791242:- chr9:37588410-38068684:- chr9:37791239:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Ras_family(96%)| Ras(46%)|FERM_M(100%),KH_6(100%),PDZ(100%),Tom5(100%),tRNA_m1G_MT(100%) 11 12 19 260 51 ENST00000304032.13 unknown downstream downstream mismappers(1) ACAGAGCTATCTGCTGCTGATCAGAGATGAAGGGGGCCCCCCGGAGGCGCAG___TTTGCCATGTGGGTGGACGCTGTTATATTTGTCTTCAGCTTGGAGGATGA...GTTTCCAGACCGTTTACCACTACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|GTAGAAGGCCCTGAAGAGGCGTTTCAGGAGGAATGGGTTTTGCTTCCTGGTCCAGTTGTGCTCACTGGCACACTTCTGCAGCACAGCAGCTTCTCCAGCATCTGTTCCTGCTTTGATTGGTGGCCAGAAACACTCAGCAGCCAGCAGTGTTCCTTAGCACCCTATTGGGCAGTTTTATAGCAGAGGCTTCCAGGAGACCCCTCCCCATGAATACGTTTCCTCAGCAACGTAAAAGTGCCAGAAAATTCTAGAGGGTGGATTTATAGGAAGTTCCACTGGAAGATTCCCAaTGACTTCTTGCCATTTAATGAGCCAtAGCCACACTCTCTTCAAAAG FQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|grrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6365 AGAP1::ENSG00000255872 ENSG00000157985.20::ENSG00000255872.3 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1098 TRUE 410 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ ENSG00000255872 ENSG00000255872.3 protein_coding - - chr9:37588413-38068687:- chr9:37784063:- chr9:37588410-38068684:- chr9:37784060:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none Ras_family(96%)| Ras(46%)|FERM_M(100%),KH_6(100%),PDZ(100%),Tom5(100%),tRNA_m1G_MT(100%) 4 4 5 260 484 ENST00000304032.13 ENST00000540557.1 downstream downstream duplicates(1) GGCAGGTTCAAGAAAGAGATTGTCGTTGATGGACAGAGCTATCTGCTGCTGATCAGAGATGAAGGGGGCCCCCCGGAGGCGCAG___TTTGCCATGTGGGcGGA...GTTTCCAGACCGTTTACCACTACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|TATGTTCCAGTAAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTTGAAGGTGCAACTAAAAGAAACAGACCAAATGTGCAG___GTTGGAGATCTCATCTATGGCCAaTTTGTGG FQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|vcsskrrpcdwhsds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6366 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 606 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15681047:+ chrX:15693055-15721847:+ chrX:15699170:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 12 19 11 51 67 ENST00000448692.5 ENST00000421585.1 downstream upstream duplicates(6),mismatches(1) CGTGGCCAAGATGGCCGCGTGtGGGATCCTCGGGTACCGGGAGCGAACGAGGAGGTTCTGGCTCAG___GTTATTGGGTTCCTGCAAGTTATCTGGGAACTGATCAAAGTTTCAGG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6367 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 607 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15675778:+ chrX:15693055-15721847:+ chrX:15693901:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 4 11 5 122 67 ENST00000448692.5 ENST00000421585.1 downstream upstream none GTAACCTGGAATGACGAAATGACGTTTGCTGCGTAGGGACGTGGCTAAACGTGAGGGGGCGTGGCCAAGATGGCCGCGTGtGGGATCCTCGGGTACCGGGAGCGAACGAGGAGGTTCTGGCTCAG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6368 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 608 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15675572:+ chrX:15693055-15721847:+ chrX:15693695:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 75 67 ENST00000380334.6 ENST00000421585.1 downstream upstream mismatches(1) CCAGAGCGCAGAGCAG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6372 WNK1::IQSEC3 ENSG00000060237.19::ENSG00000120645.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 611 TRUE 1101 TRUE 412 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:813814:+ chr12:861745-1020618:+ chr12:922980:+ IQSEC3 ENSG00000120645.12 protein_coding + + chr12:66767-178455:+ chr12:125633:+ chr12:175933-287621:+ chr12:234799:+ chr12:824089 chr12:104288 NA NA chr12:933255 chr12:213454 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(33%)|PH_domain(100%),Sec7_domain(100%) PK_Tyr_Ser-Thr(56%),Pkinase(56%)|IQ_SEC7_PH(100%),Sec7(100%) 3 9 14 177 25 ENST00000315939.11 ENST00000538872.6 downstream upstream duplicates(1) GCTCCTTTAAGACGGTCTACAAAGGTCTGGACACTGAAACCACCGTGGAAGTCGCCTGGTGTGAACTGCAG___GATCGAAAATTAACAAAGTCTGAGAGGCAGAGATTTAAAGAAGAAGCTGAAATGTTAAAAGGTCTTCAGCATCCCAATATTGTTAGATTTTATGATTCCTGGGAATCCACAGTAAAAGGAAAGAAGTGCATTGTTTTGGTGACTGAACTTATGACGTCTGGAACACTTAAAAC|TGATGGCTCCTGCACCCAGGCCGGTGGGGGCATGGAGGACTCCGTGGTGGCAGCGGCGGCGGTGGCAGCCGGCAGACCCAGTGCCCATGCCCCGAAGGCTCAAGCCCAGGAGCTGCAGGAGGAGGAGGAGCGGCCGGGGGCAGGGGCTGCCTCCCCAAGGGCTGGCCCCCAGCACAAGGCCTCCCCCGGCCGGCAGCAGCCTGCCCTGGCGACGGCGCTGTGCtCCCACGCCCCTGCCGCCTCCGATTACGAACTCTCCCTTGACCTAAAGAATAAACAG___ATTGAAATGCTAGAACATAAGTACGGCGGTCACCTGGTGTCCCGGCGCGCCGCTTGCACCATCCAAACCGCCTTCCGCCAATACCAGCTCAGCAAGAACTTCGAGAAAATCCGCAACTCGCTTCTGGAGAGCCGCCTGCCACGGCGGATCTCCCTGCGCAAGGTGCGGTCACCCACGGCC SFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKt|DGSCTQAGGGMEDSVVAAAAVAAGRPSAHAPKAQAQELQEEEERPGAGAASPRAGPQHKASPGRQQPALATALCsHAPAASDYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRSPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 863490|863490 FALSE|FALSE 247433|234799 FALSE|TRUE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6373 WNK1::IQSEC3 ENSG00000060237.19::ENSG00000120645.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1101 TRUE 412 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:813814:+ chr12:861745-1020618:+ chr12:922980:+ IQSEC3 ENSG00000120645.12 protein_coding + + chr12:66767-178455:+ chr12:138267:+ chr12:175933-287621:+ chr12:247433:+ chr12:824089 chr12:104288 NA NA chr12:933255 chr12:213454 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(33%)|PH_domain(100%),Sec7_domain(100%) PK_Tyr_Ser-Thr(56%),Pkinase(56%)|IQ_SEC7_PH(100%),Sec7(100%) 2 2 7 177 42 ENST00000315939.11 ENST00000538872.6 downstream upstream duplicates(1) AAGAGCTGGAGACCAAGGCCGTGGGAATGTCTAACGATGGCCGCTTTCTCAAGTTTGACATCGAAATCGGCAGAGGCTCCTTTAAGACGGTCTACAAAGGTCTGGACACTGAAACCACCGTGGAAGTCGCCTGGTGTGAACTGCAG___GATCGAAAATTAACAAAGTCTGAGAGGCAGAGATTTAAAGAAGAAGCTGAAATGTTAAAAGGTCTTCAGCATCCCAATATTGTTAGATTTTATGATTCCTGGGAATCCACAGTAAAAGGAAAGAAGTGCATTGTTTTGGTGACTGAACTTATGACGTCTGGAACACTTAAAAC|ATTGAAATGCTAGAACATAAGTACGGCGGTCACCTGGTGTCCCGGCGCGCCGCTTGCACCATCCAAACCGCCTTCCGCCAATACCAGCTCAGCAAGAACTTCGAGAAAATCCGCAACTCGCTTCTGGAGAGCCGCCTGCCACGGCGGATCTCCCTGCGCAAGGTGCGGTCACCCACGGCCGAGAGCCTGGCGGCCGAGAAAaCGCTCATGaAG...GCTGGTGCGCTCGCCCTCCCTGCCGCCCACCTTCGCAGGCACCCTCACCGAGCTGGAGGACTCCTTCACCGAGCAGGTGCAATCCCTGGCCAAGTCCATCGACGACGCGCTCAGCACGTGGAGCCTCAAGACCATGTGCTCCCTGCGGGAGAGTGGCG ELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKt|lkc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 863490|863490 FALSE|FALSE 247433|234799 TRUE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6374 UNK::CD300LD-AS1 ENSG00000132478.10::ENSG00000182352.8 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1102 TRUE 413 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75818168:+ chr17:73780887-73821880:+ chr17:73814249:+ CD300LD-AS1 ENSG00000182352.8 lncRNA + + chr17:74584679-74594209:+ chr17:74590519:+ chr17:72580818-72590348:+ chr17:72586658:+ chr17:75818413,chr17:75818413 chr17:74589376,chr17:74589373 NA NA chr17:73814494,chr17:73814494 chr17:72585515,chr17:72585512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Unkempt_Zinc_finger_domain_1_(Znf1)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)| zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(100%)| 4 2 17 104 32 ENST00000589666.6 ENST00000392620.5 downstream upstream duplicates(2),mismatches(3) T...GTCTGGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGGCTTCGAGAGGGAAGACCAGGTGGGAGCCGAGTACCTGAAAAATTTCAAATGCCAG___GCCAAATTAAAACCCCACTCATTAGAGCCCAGGAGTCAAGAGCAGCCTCTGCTTCAGCCCAAACAG|GGTCACCATGGTGGGAGCGGAAGACAATTTCACCATAAACAGGCAGAGCTCCACAACCCAAGGAATTCCTGGAACAGAAATTGGACTCCATGCCCAAATCTGCTTTCTATGGCATCTGAAGGGAACTAAGAAACTACACACGACCTCCTGGGGAAAGATGGGTATAGGGGCTTCATTTGTTCACTCTGAAAAAAGTTCTACATCAGAATGGAAAGACAACAATTAAGGTAAATATTTAAAGAAAAACTACATCTGGAA SGLAPGSYKKAPGFEREDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQ|ghhggsgrqfhhkqaelhnprnswnrnwtpcpnllsmasegn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6375 UNK::CD300LD-AS1 ENSG00000132478.10::ENSG00000182352.8 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1102 TRUE 413 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75817526:+ chr17:73780887-73821880:+ chr17:73813607:+ CD300LD-AS1 ENSG00000182352.8 lncRNA + + chr17:74584679-74594209:+ chr17:74590519:+ chr17:72580818-72590348:+ chr17:72586658:+ chr17:75818413,chr17:75818413 chr17:74589376,chr17:74589373 NA NA chr17:73814494,chr17:73814494 chr17:72585515,chr17:72585512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Unkempt_Zinc_finger_domain_1_(Znf1)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)| zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(100%)| 6 4 9 116 32 ENST00000589666.6 ENST00000392620.5 downstream upstream duplicates(3),mismatches(2) CCGAGGACCCTTCTGCGCCTTTGCCCACGTAGAAC___AGCCACCCCTGAGTGACGACCTGCAGCCTTCCTCAGCTGTGTCCAGCCCCACCCAGCCAGGTCCTGTCCTGTACATGCCATCTGCCGCCGGAGACTCGGTGCCTGTGAGCCCCTCCAGCCCGCATGCCCCTGACCTCAGTGCC___CTCCTCTGTAGAAACAGCAGCCTAGGCAGCCCGTCTAACCTCTGCGGCTCCCCACCGGGCTCCATCAGGAAGCCCCCAAACCTGGAGGGCATCGTCTTCCCTGGGGAGTCTGGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGGCTTCGAGAGGGAAGACCAGGTGGGAGCCGAGTACCTGAAAAATTTCAAATGCCAG|GGTCACCATGGTGGGAGCGGAAGACAATTTCACCATAAACAGGCAGAGCTCCACAACCCAAGGAATTCCTGGAACAGAAATTGGACTCCATGCCCAAATCTGCTTTCTATGGCATCTGAAGGGAACTAAGAAACTACACACGACCTCCTGGGGAAAGATGGGTATAGGGGCTTCATTTGTTCACTCTGAAAAAAGTTCTACATCAGAATGGAAAGACAACAATTAAGGTAAATATTTAAAGAAAAACTACATCTGGAA RGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFEREDQVGAEYLKNFKCQ|ghhggsgrqfhhkqaelhnprnswnrnwtpcpnllsmasegn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6377 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1103 TRUE 414 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:211947430:- chr2:212240442-213403565:- chr2:212812155:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:211932846,chr2:211932855 chr2:212829564,chr2:212829570 NA NA chr2:212797571,chr2:212797580 chr2:213694288,chr2:213694294 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Receptor_L_domain(37%)| Recep_L_domain(51%)| 7 13 2 182 66 ENST00000436443.5 ENST00000415387.1 upstream downstream mismappers(1) CGAGAAGTCACAGGCTACGTGTTAGTGGCTCTTAATCAGTTTCGTTACCTGCCTCTGGAGAATTTACGCATTATTCGTGGGACAAAACTTTATGAGGATCGATATGCCTTGGCAATATTTTTAAACTACAGAAAAGATGGAAACTTTGGACTTCAAGAACTTGGATTAAAGAACTTGACAG|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACCTCTCCCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCTAGTAGCTGGGACTACA REVTGYVLVALNQFRYLPLENLRIIRGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLT|alfkrakiwkqlkcsstgfhsvtqagvqwhrlsslqplpprlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6378 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1103 TRUE 414 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:211932846,chr2:211932855 chr2:212829564,chr2:212829570 NA NA chr2:212797571,chr2:212797580 chr2:213694288,chr2:213694294 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Receptor_L_domain(10%)| Recep_L_domain(0%)| 5 12 2 322 66 ENST00000436443.5 ENST00000415387.1 upstream downstream none GACAGGACTTTGGGTCTGGGTGAGCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG___TGTGTGCAGGAACGGAGAATAAACTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACCTCTCCCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCTAGTAGCTGGGACTACAGGTGCACGCTACCACGCCCAGGCAATTTTTGTATTTTTTGTAGAGACGGGGTTTTGCCATGTTGCCCAGTCTCGTCTTCTTCAACTCCTGGATTCAAGC TGLWVWVSLLVAAGTVQPSDSQSVCAGTENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLR|hyskeprygsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 6379 CYB5B::TRAF7 ENSG00000103018.18::ENSG00000131653.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYB5B ENSG00000103018.18 protein_coding + + chr16:69398402-69466264:+ chr16:69424857:+ chr16:69432305-69500167:+ chr16:69458760:+ TRAF7 ENSG00000131653.14 protein_coding + - chr16:2155698-2178129:+ chr16:2163413:- chr16:2205699-2228130:+ chr16:2213414:- chr16:69428531,chr16:69428527 chr16:2168487,chr16:2168491 NA NA chr16:69462434,chr16:69462430 chr16:2218488,chr16:2218492 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Cytochrome_b5-like_Heme/Steroid_binding_domain(41%)| Cyt-b5(0%)| 7 5 8 1137 12 ENST00000307892.13 unknown downstream downstream duplicates(2) GAGAGGCAGTATGTCCGGTTCAATGGCGACTGCGGAAGCTAGCGGCAGCGATGGGAAAGGGCAGGAAGTCGAGACCTCAGTCACCTATTACCGGTTGGAGGAGGTGGCAAAGCGCAACTCCTTGAAGGAACTGTGGCTTGTGATCCATGGGCGAGTCTACGATGTCACCCGCTTCCTCAACGAG|GTGCGGTCAGGACCCAGCCAGCACCAGGCTGCAGCGGGGAGACACCAGCCACACCCCAGAGAAAGAACCTGCAGG___GTTCCCCCCGCATGATCCACACAGAGGGCCTGGTGAAGTCCTCGG MSGSMATAEASGSDGKGQEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNE|vrsgpsqhqaaagrhqphprertcrvppa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6380 AGO2::STRN3 ENSG00000123908.12::ENSG00000196792.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 612 TRUE 1104 TRUE 415 AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140544213:- chr8:141530255-141645732:- chr8:141554312:- STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30912182:- chr14:31363005-31495607:- chr14:31381388:- chr8:140542446,chr8:140542455 chr14:30931299,chr14:30931305 NA NA chr8:141552545,chr8:141552554 chr14:31400505,chr14:31400511 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(32%)|WD_domain__G-beta_repeat(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(29%)|WD40(100%) 3 8 6 89 231 ENST00000220592.10 ENST00000355683.9 upstream downstream duplicates(2),low_entropy(1) CGGGCCTGCAGCTGGTGGTGGTCATCCTGCCCGGCAAGACGCCCGTGTACG___CCGAGGTCAAGCGCGTGGGAGACACGGTGCTGGGGATGGCCACGCAGTGCGTGCAGATGAAGAACGTGCAGAGGACCACGCCACAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAGCTGGGAGGCGTGAACAACATCCTGCTGCCCCAGGGCAG___GCCGCCGGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCAGACGTCACTCACCCCCCCGCCGGGGATGGGAAGAAGCCCTCCATTGCCGCC|TTGCCTGCTAATAAAGATGCCTTTCGAAAGACATGGAATCCCAAGTATACACTACGTAGCCATTTTGATGGAGTACGGGCATTAGCTTTTCATCCTGTAGAACCTGTGCTGGTTACTGCTTCTGAGGACCATACCCTGAAACTTTGGAACCTGCAAAAAACAGTTCCTGCCAAAAA___GAGTGCCTCTTTAGATGTAGAGCCTATCTACACATTTAGGGCCCACAT___CGG...ATGCCGAGTCCCAGTGTAGATCCATATGATACATATG___AGCCAAATGTTCTAGCTGGCACTTTAGTTGGTCATACAGATGCAGTTTGGGGTCTTGCTTATAGT GLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAA|LPANKDAFRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6381 AGO2::STRN3 ENSG00000123908.12::ENSG00000196792.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1104 TRUE 415 AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140544213:- chr8:141530255-141645732:- chr8:141554312:- STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30913657:- chr14:31363005-31495607:- chr14:31382863:- chr8:140542446,chr8:140542455 chr14:30931299,chr14:30931305 NA NA chr8:141552545,chr8:141552554 chr14:31400505,chr14:31400511 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(32%)|WD_domain__G-beta_repeat(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(29%)|WD40(100%) 2 0 8 89 203 ENST00000220592.10 ENST00000355683.9 upstream downstream duplicates(1) CAGACCTCAACCATGATCAGAGCGACTGCTAGGTCGGCGCCCGATCGGCAAGAAGAGATTAGCAAATTG___ATGCGAAGTGCAAGTTTCAACACAGATCCATA...GTGGAGCCCATGTTCCGGCACCTGAAGAACACGTATGCGGGCCTGCAGCTGGTGGTGGTCATCCTGCCCGGCAAGACGCCCGTGTACG___CCGAGGTCAAGCG...GCAGAGGACCACGCCACAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAGCTGGGAGGCGTGAACAACATCCTGCTGCCCCAGGGCAG___GCCGCCGGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCAGACGTCACTCACCCCCCCGCCGGGGATGGGAAGAAGCCCTCCATTGCCGCC|CTGAACCAATAACGTTTCCATCTGGAGGAGGCAAGTCATTT...TGTTAAGTGTACTGGGCCTTGGAGACCTTGCAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGAT___TTGCCTGCTAATAAAGATGCCTTTCGAAAGACATGGAATCCCAAGTATACACTACGTAGCCATTTTGATGGAG QRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAA|lnq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6382 AGO2::STRN3 ENSG00000123908.12::ENSG00000196792.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1104 TRUE 415 AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140544213:- chr8:141530255-141645732:- chr8:141554312:- STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30929311:- chr14:31363005-31495607:- chr14:31398517:- chr8:140542446,chr8:140542455 chr14:30931299,chr14:30931305 NA NA chr8:141552545,chr8:141552554 chr14:31400505,chr14:31400511 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(32%)|WD_domain__G-beta_repeat(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(29%)|WD40(100%) 0 1 9 89 60 ENST00000220592.10 ENST00000556577.1 upstream downstream none GCAGAGGACCACGCCACAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAGCTGGGAGGCGTGAACAACATCCTGCTGCCCCAGGGCAG___GCCGCCGGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCAGACGTCACTCACCCCCCCGCCGGGGATGGGAAGAAGCCCTCCATTGCCGCC|ATAAAGATGACCTCTCCCC...AGACCAGGGACTAATAAGTAAACTGAAGGAACAGTACAAGAAGGAACGAAAGGGGAAGAAAGGGGTGAAGA___CTGAACCAATAACGTTTCCATCTGGAGGAGGCAAGTCATT QRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAA|ikmtsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6383 AGO2::STRN3 ENSG00000123908.12::ENSG00000196792.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1104 TRUE 415 AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140544213:- chr8:141530255-141645732:- chr8:141554312:- STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30919106:- chr14:31363005-31495607:- chr14:31388312:- chr8:140542446,chr8:140542455 chr14:30931299,chr14:30931305 NA NA chr8:141552545,chr8:141552554 chr14:31400505,chr14:31400511 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(32%)|WD_domain__G-beta_repeat(100%) ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(29%)|WD40(100%) 0 1 8 89 52 ENST00000220592.10 ENST00000357479.10 upstream downstream none GCAGAGGACCACGCCACAGACCCTGTCCAACCTCTGCCTGAAGATCAACGTCAAGCTGGGAGGCGTGAACAACATCCTGCTGCCCCAGGGCAG___GCCGCCGGTGTTCCAGCAGCCCGTCATCTTTCTGGGAGCAGACGTCACTCACCCCCCCGCCGGGGATGGGAAGAAGCCCTCCATTGCCGCC|GGGCCAACAGGACAAAACTCTACGACATGATAGCTGATCTGGGAGATGATGAGCTGCCCCACATCCCTTCAGGAAT...CGTTTCCATCTGGAGGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACCTTGCAGACTTGACGGTAACAAAT QRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAA|gptgqnstt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6384 ZNF257::ENSG00000268278 ENSG00000197134.13::ENSG00000268278.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF257 ENSG00000197134.13 protein_coding + + chr19:22052430-22091480:+ chr19:22052635:+ chr19:22235232-22274282:+ chr19:22235437:+ ENSG00000268278 ENSG00000268278.1 unprocessed_pseudogene + - chr19:21637974-21656300:+ chr19:21640621:- chr19:21820776-21839102:+ chr19:21823423:- chr19:22062459,chr19:22062460 chr19:21647333,chr19:21647332 NA NA chr19:22245261,chr19:22245262 chr19:21830135,chr19:21830134 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 6 2 8 100 13 ENST00000594947.6 unknown downstream downstream duplicates(2),mismatches(1) GCTCTAGCCCGAGCTGCAGGTCTCGTCTTCCCTGGTCTGTGTCCTCTTCTCCTAGGGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCCCAGCTAAGACGCCAGGTCCTCCTGGAAGCCTAGAAATG|AGCATCACTTGAACCcGGGAGGCGGAGGTTGCTGTGAGCCAAGATCATGACACTGCACTCCAGCTTGGGCAACAAGAGCAAAATGCTGTCTCAAAAAAAAAACAAAAAAACAAAACAAAACAAAAAAAACAACTTGAAGAAGTGTTTGCTCTATCAAATTCACAGACACCAATGCAAAACTATATTGTGCCTATTGTCAATGCTTCTATTTTTAC M|sit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6386 DENND4B::NUP210L ENSG00000198837.10::ENSG00000143552.10 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 613 FALSE NA FALSE NA DENND4B ENSG00000198837.10 protein_coding - - chr1:153929501-153946718:- chr1:153938900:- chr1:153901977-153919194:- chr1:153911376:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154054832:- chr1:153965166-154127592:- chr1:154027308:- chr1:153938408 chr1:154056561 NA NA chr1:153910884 chr1:154029037 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%)|Bacterial_Ig-like_domain_(group_2)(100%) DENN(100%),dDENN(100%),uDENN(100%)|Big_2(100%) 7 0 5 123 3 ENST00000361217.9 ENST00000271854.3 upstream downstream mismatches(1) CTCCGAGGGAGCTCGTGATGTTGACAACCTTTTCTTCCTGCAGG___GCTTCCTCAAATCCCGGGAACGCTCCAGCCACAAACTTTACTCTCAGCTGCTGCACACACAGATGTTCTCACAGTTCATTGAGGAGTGCTCTTTTGGCTCTGCTCGCCATGCTGCCCTTGAATTCTTTGACTCTTGTGTTGAAAAG|GTGTTTCCTCCATTCAGACTTCTTCCAGAGAAAATGACACTGATTCCAATGAATATGATGCAG___GTAATGTCTGAAGGTGGCCCCCAGCCCCAATCCATCGTTCACTTCTCCATCAGTAATCAGACCGTGGCTGTTGTTAATAGGAG SEGARDVDNLFFLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVEK|VFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6387 FNDC3A::ENSG00000249207 ENSG00000102531.16::ENSG00000249207.2 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1105 TRUE 416 FNDC3A ENSG00000102531.16 protein_coding + + chr13:48975912-49209779:+ chr13:49075364:+ chr13:49550048-49783915:+ chr13:49649500:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39140911:- chr4:39068594-39183878:- chr4:39142531:- chr13:49108355 chr4:39180792 NA NA chr13:49682491 chr4:39182412 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 3 5 31 16 ENST00000492622.6 ENST00000654813.1 downstream downstream none CCCTATTGTAAGTGCAGATGGAACACAACAG___GTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAG|GGAAGGGTATCAATTTACTTCTAAGAATTCCCCAAAAGGAACAAATGGAAAATAGAATTTTATCTGCTTCATTTGCAATGTCACAAGTATGGATCATTTTCATAAAATTCATCTCATACCCCTGGGATGAAAGAGTTGATGAG___TTTTTCTTCCCAGGAAATTACCTTTCCACACAGTCTGAGAGTCTGGAAGTCAAGTTGGATGCGGG...TCTTGTGCCTCAGCCTCCCAAACtGGGATTACAG___GTTGGCATGCTGAGGGACAGCTGAGTAAGCTTCAATCATGGAGAAAAGATAATATCCTACAGGAAGG PIVSADGTQQVILVQVNPGEAFTIRREDGQFQCIT|gkginlllripqkeqmenrilsasfamsqvwiifikfisypwdervdefffpgnylstqseslevklda NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6388 FNDC3A::ENSG00000249207 ENSG00000102531.16::ENSG00000249207.2 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1105 TRUE 416 FNDC3A ENSG00000102531.16 protein_coding + + chr13:48975912-49209779:+ chr13:49075364:+ chr13:49550048-49783915:+ chr13:49649500:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39069134:- chr4:39068594-39183878:- chr4:39070754:- chr13:49108355 chr4:39180792 NA NA chr13:49682491 chr4:39182412 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 3 1 31 15 ENST00000541916.5 ENST00000668468.1 downstream downstream duplicates(1) ACGACGTCATGTGTTAG___AATTGGAGCGTTATTCAGTATATTAATGTCTTATTGATAATGGCAGAACATCCACCACTACTGGATACAACTCAGATCTTAAGT...GTAAGTGCAGATGGAACACAACAG___GTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAG|GTTGGCATGCTGAGGGACAGCTGAGTAAGCTTCAATCATGGAGAAAAGATAATATCCTACAGGAAGGAGAAACAATATAACAGGAACCTGGGTCTCTGAATGAACTTGTGAAGCAGAGCTACCTgTCCGCCCTGGGCCACTTGCCCACCTATGAGGTGATAGAAAAACAAACTTCCATCTAATTTAAG VSADGTQQVILVQVNPGEAFTIRREDGQFQCIT|gwhaegqlsklqswrkdnilqegeti* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6389 FNDC3A::ENSG00000249207 ENSG00000102531.16::ENSG00000249207.2 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1105 TRUE 416 FNDC3A ENSG00000102531.16 protein_coding + + chr13:48975912-49209779:+ chr13:49075364:+ chr13:49550048-49783915:+ chr13:49649500:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39113253:- chr4:39068594-39183878:- chr4:39114873:- chr13:49108355 chr4:39180792 NA NA chr13:49682491 chr4:39182412 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 2 4 31 518 ENST00000492622.6 ENST00000654813.1 downstream downstream none ACACAACAG___GTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAG|TTTTTCTTCCCAGGAAATTACCTTTCCACACAGTCTGAGAGTCTGGAAGTCAAGTTG...TGCCCCCCTATAGCATACAGCAGTCCATTCCAGGTCGTCACTCCTACGCCtCCTCTCCTTTTTGACATCTGTGCACACAGTGTCCACTTATTAGTATGAGGATCAAAACATTCTACTGATTTGAGACAAGAACTTCCATCACGACCACCAACTGCATAAAGTCTGCAAAAAGAATATATGAAATGATAAATAAGACATGTGCCATTATGCTTAGAACAAAGAGGCTCTTCTTATGTTGTTATtTCATTGAATTTAAG TQQVILVQVNPGEAFTIRREDGQFQCIT|vflprklpfhtv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6398 SLC13A3::MORN1 ENSG00000158296.14::ENSG00000116151.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC13A3 ENSG00000158296.14 protein_coding - - chr20:46557823-46684467:- chr20:46670043:- chr20:45186462-45313106:- chr20:45298682:- MORN1 ENSG00000116151.14 protein_coding - - chr1:2321253-2391707:- chr1:2324143:- chr1:2252692-2323146:- chr1:2255582:- chr20:46669378,chr20:46669381 chr1:2328191,chr1:2328191 NA NA chr20:45298017,chr20:45298020 chr1:2259630,chr1:2259630 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 2 1 1 11 6 ENST00000290317.9 ENST00000378531.8 upstream downstream duplicates(1) AGAAGGGTGTGTTTGTTTCCCCATCTGCCATGATTATAAGTTTTCTGAGGCATCCCCAGCCATGCTGAACT___GGAAGTGGCACTAAGGTCCAAAGGAAGCTACATATGGGTGGTCCCTGCTACACCAGCCTCCCAAGCCTCCCAGTGCACCTTCTAGGAGACAAGCAAG|GCCTGAGGGGAGAGCCACGGAGGAGCAGGCTGCGGCAGCACACCTAGGTAGGTGGACAaGGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6399 TMEM241::CATSPER1 ENSG00000134490.14::ENSG00000175294.6 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM241 ENSG00000134490.14 protein_coding - - chr18:23197144-23437961:- chr18:23399566:- chr18:20777108-21017925:- chr18:20979530:- CATSPER1 ENSG00000175294.6 protein_coding - - chr11:66016752-66026479:- chr11:66023061:- chr11:65784223-65793950:- chr11:65790532:- chr18:23392483,chr18:23392486 chr11:66024708,chr11:66024711 NA NA chr18:20972447,chr18:20972450 chr11:65792179,chr11:65792182 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Ion_transport_protein(100%) |Ion_trans(100%),PKD_channel(100%) 2 0 1 33 1 ENST00000383233.8 ENST00000312106.6 upstream downstream low_entropy(1) CTTGAAATTTACCTACCCTACATTATTCCAAGG___GTGGCAGACGCTCATTGGTGGACTTTTGCTTCATGTGTCCTGGAAACTGGGCTGGGTAGAGATCAACAGCAGTTCAAG___ATCTCATGTTCTTGTGTGGCTTCCTGCTTCAGTGCTGTTTGTGGGTATAATCTATGCTGGGTCCAGAGCATTGTCCAGACTG|CCGGCCGGCTCCAGCGGACCCGCAAGAAGGGACACTCTACCAATCTCTT...AGCCCTGCTCAAGATCATCGCCCTGGGCCTCTCGTACTTCTTTGACTTCTGGAACAATTTGG___ACCCACTCCTTCGCCATCTACCACCAAAGCCTCTTCCGG LKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGIIYAGSRALSRL|pagssgparrdtlpis NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6415 BCAR3::ZCCHC17 ENSG00000137936.18::ENSG00000121766.16 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- ZCCHC17 ENSG00000121766.16 protein_coding + + chr1:31296982-31364953:+ chr1:31364032:+ chr1:31769829-31837800:+ chr1:31836879:+ chr1:93773739,chr1:93773743 chr1:31360889,chr1:31360885 NA NA chr1:94239295,chr1:94239299 chr1:31833736,chr1:31833732 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none none 0 1 0 3 311 ENST00000433544.1 ENST00000618216.4 upstream upstream none CCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|GAGAAGAAGAAAAAGAAACATAGAGATAGGAAGTCATCTGACTCTGACAGCTCAGACTCTGAGAGTGATACAGGCAAGAGGGCAAGGCACACATCAAAAGACAGCAAGGCAGCAAAGAAGAAGAAAAAGAAGAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6418 ZNF14::ENSG00000291177 ENSG00000105708.9::ENSG00000291177.1 ISHIKAWAHERAKLIO02ER SRR8615493 SRR8652063 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF14 ENSG00000105708.9 protein_coding - - chr19:19710472-19733112:- chr19:19732956:- chr19:19821281-19843921:- chr19:19843765:- ENSG00000291177 ENSG00000291177.1 lncRNA + - chr19:19776561-19836196:+ chr19:19823425:- chr19:19887370-19947005:+ chr19:19934234:- chr19:19719434,chr19:19719436 chr19:19831606,chr19:19831607 NA NA chr19:19830243,chr19:19830245 chr19:19942415,chr19:19942416 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 23 11 21 176 27 ENST00000344099.4 unknown upstream downstream duplicates(4),mismatches(2) CGCCATTCCTGGCCCATGGGAAGATTGCGTTTCACCTGCTCCTGAAGGCCGAAGGTGGCTCTAGCGCATCCTTTGTCGCGCCGTGACCTGCAGGTACTGACAGATCCGTAGGGAGGACACCGTGACTTCCCGGACGCTGGGAAATG|ACTATGGAGGATTCACCACCAGACCAGGAAGCAACAGGCTGGGCTCCAGAGTCGGATACCGCACTCATCAGACTAGGAGGATTCACCACCAGACTGGAAAGCAACAGCCTGGGCTCCAGAGTCAGCCACCCATCTCTGCACAGACAAGGAGAGGTCTCATGAAGGTTCCGCGTGATCTGGGACCCTAGC M|tmedsppdqeatgwapesdtalirlggfttrlesnslgsrvshpslhrqgevs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6419 ATR::PLS1 ENSG00000175054.16::ENSG00000120756.13 ISHIKAWAHERAKLIO02ER SRR8615493 SRR8652063 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATR ENSG00000175054.16 protein_coding - - chr3:142449007-142578733:- chr3:142535080:- chr3:142167849-142297575:- chr3:142253922:- PLS1 ENSG00000120756.13 protein_coding + - chr3:142596393-142713664:+ chr3:142634765:- chr3:142315235-142432506:+ chr3:142353607:- chr3:142528867,chr3:142528889 chr3:142639948,chr3:142639949 NA NA chr3:142247709,chr3:142247731 chr3:142358790,chr3:142358791 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none UME_(NUC010)_domain(100%)| UME(100%)| 2 8 7 55 14 ENST00000350721.9 unknown upstream downstream none ATTTTCTTCATGAAATATATTTTTTACCTGATCATCCAGAATTAAAAAAGATAAAAGCCGTTCTCCAGGAATACAGAAAG___GAGACCTCTGAGAGCACTGATCTTCAGACAACTCTTCAGCTCTCTATGAAGGCCATTCAACATGAAAATGTCGATGTTCGTATTCATGCTCTTACAAGCTTGAAGGAAACCTTGTATAAAAATCAG|ACCTGTATTTCCTTCTGCCTTGAGGACTTCGTTTAACATTTGTCAGGCAAGGCTGCTGG...ATACTACACCATCGCGGGCAAAACTCAAC...___GACATCTGTATTGAAGAAGGCTTATTCTTGCTCTTTATGGCCACAAGCTGGTAGAATTAGGACCACTGGCAGAAGAAATACCAGGAGACAAATTCTGCACGAATGTAAGGAAATATTCTGTCCACGTGGTCCAGA FLHEIYFLPDHPELKKIKAVLQEYRKETSESTDLQTTLQLSMKAIQHENVDVRIHALTSLKETLYKNQ|tcisfcledfv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase ATR Atypical PIKK ATR Q13535 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ATR serine/threonine kinase 1 Yes endometrial, gastric, epithelial ovarian, myeloma oropharyngeal familial cutaneous telangiectasia and cancer syndrome epithelial, leukaemia_lymphoma TSG frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 6439 ENSG00000263765::CCDC178 ENSG00000263765.5::ENSG00000166960.17 ISHIKAWAHERAKLIO02ER SRR8615493 SRR8652063 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000263765 ENSG00000263765.5 lncRNA + - chr18:32833454-32938316:+ chr18:32931124:- chr18:30413417-30518280:+ chr18:30511088:- CCDC178 ENSG00000166960.17 protein_coding - - chr18:32937402-33441101:- chr18:32974681:- chr18:30517366-31021065:- chr18:30554645:- chr18:32930920,chr18:32930922 chr18:32987260,chr18:32987259 NA NA chr18:30510884,chr18:30510886 chr18:30567224,chr18:30567223 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' low none none none 1 1 0 3 31 unknown ENST00000383096.8 upstream downstream none TAATAATTACACTAGGAAAATCAGCATAAACCAGGACTGTCCTAGCCTGGAAAACCTGGAACTCATGATTCCCCCGGATAGCACTAACCCAATTACTTCCTTTCAAAGGTTCATATCTTAATATAGAAAGCCTGGCAAATAAATGCATAATCTCTAGAAATCAGTAAACCGTGAGAAAG|CTCTGTCAGCTGCAGAGAAGGATGCACACACTGTaGC...AATAGCCCGTAGAGACAAGACAATCCTAAGCAAAAAGAACAAAACTGGAGGCATCATGCTACTTGACTTCAAACTATACTACAAGGCTACAATAACCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6442 SUFU::GBF1 ENSG00000107882.12::ENSG00000107862.7 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 614 FALSE NA FALSE NA SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102550106:+ chr10:104263729-104393292:+ chr10:104309863:+ GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102344051:+ chr10:104005128-104142656:+ chr10:104103808:+ chr10:102561407 chr10:102335852 NA NA chr10:104321164 chr10:104095609 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Suppressor_of_fused_protein_(SUFU)(49%)|Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%),Sec7_domain(100%) SUFU(48%)|DCB(8%),Sec7(100%),Sec7_N(100%) 10 34 13 182 503 ENST00000369902.8 ENST00000676513.1 downstream upstream duplicates(6),mismatches(6) GTGACAACAGAGTCCATGA___GTTTACAGGAACAGATGGACCTAGTGGTTTTGGCTTTGAGTTGACCTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCCGCAGAGTTAATGCAGGGCTTGGCACGATACGTGTTCCAGTCAG|AACTCTCAGAAATTGAGCCCAATGTATTCCTTCGACCTTTTCTGGAAGTGATTCGCTCTGAAGATACCACTGGCCCTATCACTGGACTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTATGCACTCATAG___ATCCCACCCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACCCATGCTCGTTTTGTGGGCACGGATCCTGCCA DNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQS|eLSEIEPNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHARFVGTDPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma UTERUS,BREAST,BREAST no_match 104309863,104309863,104309863 TRUE,TRUE,TRUE 104111013,104111013,104111013 FALSE,FALSE,FALSE YES,YES,YES In-frame,In-frame,In-frame TRUE Breast,Breast BREAST,BREAST no_match 102550106,102550106 TRUE,TRUE 102351256,102351256 FALSE,FALSE TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 6443 OXCT1::GDNF-AS1 ENSG00000083720.13::ENSG00000248587.8 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OXCT1 ENSG00000083720.13 protein_coding - - chr5:41730065-41870425:- chr5:41794003:- chr5:41730167-41870527:- chr5:41794105:- GDNF-AS1 ENSG00000248587.8 lncRNA + - chr5:37811589-37953827:+ chr5:37882337:- chr5:37811691-37953929:+ chr5:37882439:- chr5:41776592,chr5:41776600 chr5:37907608,chr5:37907613 NA NA chr5:41776694,chr5:41776702 chr5:37907710,chr5:37907715 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none Coenzyme_A_transferase(80%)| CoA_trans(37%)| 6 6 23 533 15 ENST00000196371.10 unknown upstream downstream duplicates(2),mismatches(3) GTAAGGGAACGAATCATCAAGAGGGCCGCTCTTGAGTTTGAGGATGGCATGTATG___CTAATTTGGGCATAGGAATCCCTCTCCTGGCCAGCAATTTTATCAGCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGTTCTGGGTTTG___GGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAG___TGGACACGTCGATCTGACAATGCTAGGAGCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCT|ATCAACAGGTTGACTATAAGTGGATCTAGGCTGGACTCGGCTCTGTTTCAGGCTACAGGTTGGGTTTAGGTCTGTTCTACACCCCTCTTCTTCTCCTTGGACCAGTGGCTCCCTGCAGCATATTCTCACAGCAAACAGAAGAGTACAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6444 OXCT1::LINC02117 ENSG00000083720.13::ENSG00000248539.1 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OXCT1 ENSG00000083720.13 protein_coding - - chr5:41730065-41870425:- chr5:41794003:- chr5:41730167-41870527:- chr5:41794105:- LINC02117 ENSG00000248539.1 lncRNA - - chr5:37899363-37920869:- chr5:37899668:- chr5:37899465-37920971:- chr5:37899770:- chr5:41776592,chr5:41776600 chr5:37907608,chr5:37907613 NA NA chr5:41776694,chr5:41776702 chr5:37907710,chr5:37907715 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Coenzyme_A_transferase(80%)| CoA_trans(37%)| 4 6 10 533 21 ENST00000196371.10 ENST00000513673.1 upstream downstream duplicates(1),low_entropy(1),mismappers(2),mismatches(2) GTGGATATTGGAGCATTTGCTCCAGAAGACATCCATATTCCTCAGATTTATGTACATCGCCTTATAAAGGGAGAAAAATATGAGAAAAGAATTGAG___CGTTT...GCCCAAATATAACTGTTCATCTTCAAAGTGAAAATGGAGTTCTGGGTTTG___GGTCCATATCCACGACAACATGAAGCTGATGCAGATCTCATCAATGCAG___GCAAGGAAACAGTTACTATTCTTCCAGGAGCCTCTTTTTTCTCCAGCGATGAATCATTTGCAATGATTAGAGG___TGGACACGTCGATCTGACAATGCTAGGAGCGATGCAGGTTTCCAAATATGGTGACCTGGCTAACTGGATGATACCT|ATGGAGTTTCaCTCTTGTTGCCCAGGCCGGAGTGCAATGGCACGATCTCGACTCACCACAACCTCTGCCTCTCAGGTTCAAGCAATTCTCCTGCCTCAACCTTCTGAGTAGCTGGGATTACAGGCACGCGCCACCATGCCTGACTAATTTTGTATTTTTAGTAGAGGTAGGGTTTCTCCACGCTGGTCAGGCTGGTCTcAAAATTCTGACCTCAGGTAATC PNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIP|mefhsccpgrsamarsrltttsasqvqaillpqpse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6445 FANCA::SPIRE2 ENSG00000187741.16::ENSG00000204991.11 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89814520:- chr16:89793091-89883385:- chr16:89880928:- SPIRE2 ENSG00000204991.11 protein_coding + - chr16:89818179-89871319:+ chr16:89819310:- chr16:89884587-89937727:+ chr16:89885718:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 6 3 4 436 39 ENST00000561667.2 unknown upstream downstream duplicates(4),inconsistently_clipped(1) GGACCCAGGGGGCCGCCGGAGGGCCTGGGCCGAGCTGCTGG___CGGGAAGGGTCAAGAGGGAAAAATATAATCCTGAAAGGGCACAGAAATTAAAGGAATCAGCTGTGCGCCTCCTGCGAAGCCATCAGGACCTGAATGCCCTTTTGCTTGAG___GTAGAAGGTCCACTGTGTAAAAAATTGTCTCTCAGCAAAGTGATTGACTGTGACAGTTCTGAGGCCTATGCTAATCATTCTAGTTCATTTATAG|GTAGGTGAAGCAGAGAAAGAAGGCAGCATACGTCAGCATTTTCTTCTCTGCACTTATAAGAAAGATCAAAGACTTTAAGACTTTCACTATTTCTTCTACCGCTATCTACTACGAACTTCAAAGACGAACCAGAAGTAAGGGAGGAACATGAAAGTGGACAAGGAGCGTGACCAGTGAAGCACCACAGGGAGGGGTTTAGGCCTCCGGATGACTGCGTGCAGGCCTGGATAACATCCAGCCTCCCACAAGAAGCTGGTGGAGCAGAGTGT DPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNALLLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFI|gr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 6448 TAX1BP1::JAZF1 ENSG00000106052.14::ENSG00000153814.13 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27817038:+ chr7:27778950-27884183:+ chr7:27856657:+ JAZF1 ENSG00000153814.13 protein_coding - + chr7:27830573-28180795:- chr7:28057342:+ chr7:27870192-28220414:- chr7:28096961:+ chr7:27827893 chr7:28044112 NA NA chr7:27867512 chr7:28083731 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Calcium_binding_and_coiled-coil_domain_(CALCOCO1)_like(100%),SKICH_domain(100%)| CALCOCO1(100%),SKICH(100%)| 2 3 20 602 65 ENST00000543117.5 unknown downstream upstream mismatches(2) GAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGAAAATGGAAG___ATGGAGCAGATGGTGCTTTTTACCCAGATGAAATACAAAGGCCACCTGTCAGAGTCCCCTCTTGGGGACTGGAAGACAATGTTGTCTGCAGCCAGCCTGCTCGAAACTTTAGTCGGCCTGATGGCTTAGAGGACTCTGAGGATAGCAAA|TATAGGTTGAAGAGAGACCCTGCAAACAAGCCCAAGGCATGTTAAGAGTGATAATAGCTAAGATCTACTGACCACTTAATATTGTGCCGAGTACTCT___GTTTGATGAATGAACAGCCATACAGAAATGTGATTGGACACAAAGGATCTGGCCTAACGGTGAAGG ELKRSLENPAERKMEDGADGAFYPDEIQRPPVRVPSWGLEDNVVCSQPARNFSRPDGLEDSEDSK|yrlkrdpankpkac* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6454 PXMP2::PGAM5 ENSG00000176894.10::ENSG00000247077.8 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1113 FALSE NA PXMP2 ENSG00000176894.10 protein_coding + + chr12:132687587-132704985:+ chr12:132696046:+ chr12:133264173-133281571:+ chr12:133272632:+ PGAM5 ENSG00000247077.8 protein_coding + + chr12:132710819-132722734:+ chr12:132720868:+ chr12:133287405-133299320:+ chr12:133297454:+ chr12:132696541,chr12:132696542 chr12:132720706,chr12:132720704 NA NA chr12:133273127,chr12:133273128 chr12:133297292,chr12:133297290 NA NA sense sense out-of-frame CDS/splice-site 3'UTR deletion/read-through medium none Mpv17_/_PMP22_family_(4%)| Mpv17_PMP22(0%)| 11 2 4 249 715 ENST00000317479.8 ENST00000498926.7 downstream upstream mismatches(1),read_through(4) AGAAGAAGCGGAAAAAAGAAAACTCTAGAAGTCTGGATGTCGGTGGGCCTCTGAGATATGCCGTTTACGG___GTTCTTCTTCACAGGGCCGCTGAGTCACTTCTTCTACTTCTTCATGGAACATTGGATCCCTCCTGAGGTCCCCCTGGCAGGGCTCAGGAGGCTTCTCCTGGACCGCCTCGTCTTTGCACCGGCCTTCCTCATGTTGTTCTTCCTCATCATGAACTTTCTGGAG|GCCGCACACACTTAACGTTTTGTTCCCAAGGAGACCGGCGGAAAGTAGAAACCTGCAATGCTGCATCTGGGAACTGACTTGTGACCAGGCTGAGAAGGGGAGAGTTGGGATCAGACAGCCTGACTTCTCTGCAGGGTTTTATACCTGAC KKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFLE|aaht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6456 MED1::CDK12 ENSG00000125686.12::ENSG00000167258.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 615 TRUE 1114 TRUE 417 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39434249:- chr17:37560538-37607525:- chr17:37590502:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39509705:+ chr17:37617739-37723812:+ chr17:37665958:+ chr17:39432781,chr17:39432553,chr17:39433028 chr17:39502321,chr17:39502391,chr17:39502503 NA NA chr17:37589034,chr17:37588806,chr17:37589281 chr17:37658574,chr17:37658644,chr17:37658756 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Mediator_of_RNA_polymerase_II_transcription_subunit_1(29%)|Protein_kinase_domain(51%) Med1(39%)|PK_Tyr_Ser-Thr(31%),Pkinase(38%) 8 4 4 3084 5111 ENST00000394287.7 ENST00000559663.2 upstream upstream duplicates(3) GCTCCATGCAAAATTTAACCAAAATAGACCCTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTCATG___GAGAAGAGGGTTGTGATGAGTTCTGGAGGGCATC...CAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTG___AGCTGTCCGGAGCTTGTACAGCAGCTAAG___GGAAAAAAATTTTGATGAATTTTCTAAGCACCTTAAGGGCCTTGTTAATCTGTATAACCTTCCAGGGGACAA|TGGGCAAATCAAACTAGCAGATTTTGGACTTGCTCGGCTCTATAACTCTGAAGAGAG___TCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACAC DMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDn|GQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Stomach,Lung exact TRUE Lung adenocarcinoma LUNG no_match 37607291 FALSE 37627132 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 6458 MED1::CDK12 ENSG00000125686.12::ENSG00000167258.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1114 TRUE 417 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39434249:- chr17:37560538-37607525:- chr17:37590502:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39511529:+ chr17:37617739-37723812:+ chr17:37667782:+ chr17:39432781,chr17:39432553,chr17:39433028 chr17:39502321,chr17:39502391,chr17:39502503 NA NA chr17:37589034,chr17:37588806,chr17:37589281 chr17:37658574,chr17:37658644,chr17:37658756 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Mediator_of_RNA_polymerase_II_transcription_subunit_1(29%)|Protein_kinase_domain(44%) Med1(39%)|PK_Tyr_Ser-Thr(24%),Pkinase(31%) 0 1 2 3084 4492 ENST00000394287.7 ENST00000559663.2 upstream upstream none TCCGGAGCTTGTACAGCAGCTAAG___GGAAAAAAATTTTGATGAATTTTCTAAGCACCTTAAGGGCCTTGTTAATCTGTATAACCTTCCAGGGGACAA|TCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGAGCTGTGG___ATGTATTCTTGGGGAACTATTCACAAAGAAGCCTATTTTTCAA PELVQQLREKNFDEFSKHLKGLVNLYNLPGDn|RPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Stomach,Lung exact TRUE Lung adenocarcinoma LUNG no_match 37607291 FALSE 37627132 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 6460 ERBB2::CDK12 ENSG00000141736.14::ENSG00000167258.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39710481:+ chr17:37844167-37886679:+ chr17:37866734:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39501250:+ chr17:37617739-37723812:+ chr17:37657503:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Furin-like_cysteine_rich_region(72%),Receptor_L_domain(50%)|Protein_kinase_domain(73%) Furin-like(35%),Recep_L_domain(45%)|PK_Tyr_Ser-Thr(65%),Pkinase(69%) 3 4 7 62643 3723 ENST00000584601.5 ENST00000559663.2 downstream upstream duplicates(2),mismatches(1) GACACCAACCGCTCTCGGGCCT___GCCACCCCTGTTCTCCGATGTGTAAGGGCTCCCGCTGCTGGGGAGAGAGTTCTGAGGATTGTCAGAGCC___TGACGCGCAC...CCACTGCCCACTGACTGCTGCCATGAGCAGTGTGCTGCCGGCTaCACGGGCCCCAAGCACTCTGACTGCCTG___GCCTGCCTCCACTTCAACCACAGTGGCATCTGTGAGCTGCACTGCCCAGCCCTGGTCACCTACAACACAGACACGTTTGAGTCCATGCCCAATCCCGAGGGCCGGTATACATTCGGCGCCAGCTGTGTGACTGCCTGTCCCT|GTGCCTTTTACCTTGTATTTGAGTATATGGACCATGACTTAATGGGACTGCTAGAATCTGGTTTGGTGCACTTTTCTGAGGACCATATCAAGTCGTTCATGAAACAGCTAATGGAAGGATTGGAATACTGTCACAAAAAGAATTTCCTGCATCGGGATATTAAGTGTTCTAACATTTTGCTGAATAACAG___TGGGCAAATCAAACTAGCAGATTTTGGACTTGCTCGGCTCTATAACTCTGAAGAGAG___TCGCCC PLPTDCCHEQCAAGyTGPKHSDCLACLHFNHSGICELHCPALVTYNTDTFESMPNPEGRYTFGASCVTACP|cAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 37868701|37868300 FALSE|FALSE 37680927|37680927 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 6491 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1120 TRUE 418 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 1 1 0 490 26 ENST00000594328.1 ENST00000599802.1 downstream upstream none CCAAGTAGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCTGGTCAACTgCATTACTCAGAAAGCTCTGCGTTGAATGAATGCCGTCAGAGCCAgTGAGGGCTCGGAAAGgAGCATTTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6492 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1120 TRUE 418 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57819945:+ chr19:58331089-58357606:+ chr19:58331313:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 0 1 605 26 ENST00000651253.2 ENST00000599802.1 downstream upstream duplicates(1),mismatches(1),same_gene(1),small_insert_size(1) CTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTGCTCCCGGGCAGTGCTTTCCCCAAGTAGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAtCCTGGTCAACTgCATTgCTCAGAAAGCTCTGCGTTGAATGgATGCCGTCAGAGCCAATGAGGGCTCGGAAAGAAGCATTTCCGTGTGTGCGCCTAATGTAGGGCCGAGACTTCCGGGGTCCTCTTGTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGAC MAAAAPRRPTQ|MHLWVAPSLQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6493 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1120 TRUE 418 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57814426:+ chr19:58281023-58331307:+ chr19:58325794:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |KRAB_box(0%) |KRAB(0%) 1 0 0 490 15 ENST00000651253.2 ENST00000598885.5 downstream upstream none GCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGcGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCT...GGAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GAGGAGTTCCGCCTCACAGGTTGTTCCCTgCgGGCGCCTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6494 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1121 TRUE 419 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 1 1 0 490 26 ENST00000596498.2 ENST00000599802.1 downstream upstream none CCAAGTAGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCTGGTCAACTgCATTACTCAGAAAGCTCTGCGTTGAATGAATGCCGTCAGAGCCAgTGAGGGCTCGGAAAGgAGCATTTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6495 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1121 TRUE 419 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57819945:+ chr19:58331087-58370309:+ chr19:58331313:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 0 1 605 26 ENST00000593873.6 ENST00000599802.1 downstream upstream duplicates(1),mismatches(1),same_gene(1),small_insert_size(1) CTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTGCTCCCGGGCAGTGCTTTCCCCAAGTAGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAtCCTGGTCAACTgCATTgCTCAGAAAGCTCTGCGTTGAATGgATGCCGTCAGAGCCAATGAGGGCTCGGAAAGAAGCATTTCCGTGTGTGCGCCTAATGTAGGGCCGAGACTTCCGGGGTCCTCTTGTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGAC MAAAAPRRPTQ|MHLWVAPSLQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6496 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1121 TRUE 419 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57814426:+ chr19:58281023-58331307:+ chr19:58325794:+ chr19:57824349 chr19:57811017 NA NA chr19:58335717 chr19:58322385 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |KRAB_box(0%) |KRAB(0%) 1 0 0 490 15 ENST00000596498.2 ENST00000598885.5 downstream upstream none GCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGcGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCT...GGAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GAGGAGTTCCGCCTCACAGGTTGTTCCCTgCgGGCGCCTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6502 PAXIP1-AS2::PAXIP1 ENSG00000214106.9::ENSG00000157212.20 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAXIP1-AS2 ENSG00000214106.9 lncRNA + + chr7:154928460-154952188:+ chr7:154929024:+ chr7:154720170-154743898:+ chr7:154720734:+ PAXIP1 ENSG00000157212.20 protein_coding - + chr7:154943687-155003124:- chr7:154989754:+ chr7:154735397-154794834:- chr7:154781464:+ chr7:154943870,chr7:154943871 chr7:154989396,chr7:154989394 NA NA chr7:154735580,chr7:154735581 chr7:154781106,chr7:154781104 NA NA sense antisense unknown exon/splice-site intron deletion/read-through/5'-5' low none none none 1 1 1 20 116 ENST00000449486.1 unknown downstream upstream duplicates(1),mismatches(1) TGCTGGTACCAGGGCCCCAGCTACTGATGAAGTGGCAGGAGTCCcCAGAAGCCTACTTCGAAGTTCCCGGGGCTTCCAGGGGAG___ATTGACGAGATTCCTGGGGAGGCGATTCATGACAGCTGAGTTCCTTTTGGAGGATCCGTCTTCAGGCAG|ATATTTTATCTGGCTGGTGTAATATTGTACATACCTAGGCTATGGCCTGCTTTTGCCACTTAAGACGTTTCCCATGTCTTTACAAGTTTTCATAAAACAGAATTCAAAAATGGCTAAGCAGCTAGAC...TTACCCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACCACAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGCGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6512 AGO2::MROH5 ENSG00000123908.12::ENSG00000226807.7 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140541164:- chr8:141530255-141645732:- chr8:141551263:- MROH5 ENSG00000226807.7 protein_coding - - chr8:141433829-141507230:- chr8:141480448:- chr8:142443929-142517330:- chr8:142490548:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(53%)| ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(47%)| 0 1 1 657 3 ENST00000220592.10 ENST00000430863.5 upstream downstream none CCATGGTCCGCGAGCTCCTCATCCAGTTCTACAAGTCCACGCGCTTCAAGCCCACCCGCATCATCTTCTACCGCGACGGTGTCTCTGAAGGCCAGTTCCAGCAG|ATGGCCATCAAGTCAGTCCCGTTCCTGAGCACGGATGTGTGGTCCAAGGAGCTGCTGTGGACACTCACCACGCC MVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQ|MAIKSVPFLSTDVWSKELLWTLTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 140547468|140547468|140547468 FALSE|FALSE|FALSE 141495483|141496501|141496429 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6536 RAD21::ELAVL2 ENSG00000164754.16::ENSG00000107105.15 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD21 ENSG00000164754.16 protein_coding - - chr8:116845934-116874776:- chr8:116863130:- chr8:117858173-117887015:- chr8:117875369:- ELAVL2 ENSG00000107105.15 protein_coding - + chr9:23690104-23826337:- chr9:23809656:+ chr9:23690102-23826335:- chr9:23809654:+ chr8:116862271,chr8:116862276 chr9:23799815,chr9:23799810 NA NA chr8:117874510,chr8:117874515 chr9:23799813,chr9:23799808 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none N_terminus_of_Rad21_/_Rec8_like_protein(88%)| Rad21_Rec8_N(74%)| 36 31 39 1128 99 ENST00000297338.7 unknown upstream upstream duplicates(2),inconsistently_clipped(2),mismatches(4) TTTAGAGAGCAGCGTGGAGAGTATCATCTCACCAAAG___GTGAAAATGGCATTACGGACATCAGGACATCTCTTACTGGGAGTAGTTCGAATCTATCACAGGAAAGCCAAATACCTTCTTGCAGACTGTAATGAAGCATTCATTAAGATAAAGATGGCTTTTCGGCCAG|ACTTTTGAGTTCTGCTGTTCCAGTGACCTCCACAAATTTTCCTGAATTTCTCCTAAAAACACACTATGTGAGAGATCAAGTAATGAAAAAGAGCACATGGCCTCTTTCTAGGGAAGAGCAAAAAGGTCATTTTGAATCTGTAATTCTTTGTCATCCACTCCCAACCAATTTTTCTGACAGTAAAGTTGGAGAAACAGTAAAGTTGGAGAAATACTGAAAACTTACTGGAGAAAGGTGAATCAAG LESSVESIISPKVKMALRTSGHLLLGVVRIYHRKAKYLLADCNEAFIKIKMAFRP|df* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD21 homolog (S. pombe) 1 Yes AML, endometrium, colorectal, lung leukaemia_lymphoma, epithelial oncogene, TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 6542 ABCB7::ZDHHC15 ENSG00000131269.19::ENSG00000102383.14 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCB7 ENSG00000131269.19 protein_coding - - chrX:75051048-75156732:- chrX:75114754:- chrX:74270883-74376567:- chrX:74334589:- ZDHHC15 ENSG00000102383.14 protein_coding - - chrX:75368427-75523502:- chrX:75379198:- chrX:74588262-74743337:- chrX:74599033:- chrX:75113029 chrX:75380576 NA NA chrX:74332864 chrX:74600411 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 3 2 6 151 49 ENST00000253577.9 ENST00000541184.1 upstream downstream none GCTCGCGATGCATTCTTGGCGCTGGGCGGCCGCGGCGGCTGCTTTCGAAAAGCGCCGGCACTCCGCGATTCTGATCCGGCCTTTAGTCTCTGTTAGCGGCTCAGGTCCGCAGTGGAGGCCACATCAACTCGGCGCCTTGGGAACCGCTCGAGCCTACCAG___CAG...GGGAAAAGGCAATTCAGGACAGTTCTTAGATGCTGCAAAG|ATTATCCAGAAGGCTCATCATCTCTTGCTGTGGAAACGGAAACATAGCAGTTTTCACATTTCCTGCATCTCTCAGACAG___GACTCACCATCTCTGCCTCCCATGAGGCTTACAGAGTTCAATGTTGGAAATCATTGTAATCTTCAAAATAAGTCACCGTGTTGGATTGAAA GKGNSGQFLDAAK|iiqkahhlllwkrkhssfhiscisqtgltisasheayrvqcwksl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6546 AP2S1::ARHGAP35 ENSG00000042753.12::ENSG00000160007.20 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 1128 FALSE NA AP2S1 ENSG00000042753.12 protein_coding - - chr19:46838136-46850846:- chr19:46850764:- chr19:47341393-47354103:- chr19:47354021:- ARHGAP35 ENSG00000160007.20 protein_coding + + chr19:46860997-47005077:+ chr19:46918488:+ chr19:47364254-47508334:+ chr19:47421745:+ chr19:46850078,chr19:46850083 chr19:46871623,chr19:46871618 NA NA chr19:47353335,chr19:47353340 chr19:47374880,chr19:47374875 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Clathrin_adaptor_complex_small_chain(0%)|FF_domain(100%),Ras_family(100%),RhoGAP_domain(100%),p190-A_and_-B_Rho_GAPs_FF_domain(100%) Clat_adaptor_s(0%)|FF(100%),Ras(100%),RhoGAP(100%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(100%) 0 9 0 1459 112 ENST00000263270.11 ENST00000672722.1 upstream upstream none GCACCCTGAGCCGGAGCTGCCCAGTCGCCGCGGGACCGGGGCCGCTGGGGTCTGGACGGGGGTCGCCATG|GAAGAAATGTTGGCTATTTGGCGATGAGAGGTGGTGAACAGTGACCATACTGGTATACAACACTATGGGACCTGGCATTTTTGCTGCATGTCCAGCCCACCCCCACTAATAATGTAGGAAGCTGTCTGGTCCATTGGAAACACTAATCTGATCTCAGAAGTGGCTGATCGTGGCAGGATGTGTCGACGATGATGATGGCAAGAAAG M|eemlaiwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 35 1 Yes endometrial carcinoma epithelial TSG nonsense, missense, frameshift, other 6547 SLC9B1::FOXO3 ENSG00000164037.17::ENSG00000118689.15 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC9B1 ENSG00000164037.17 protein_coding - - chr4:102885048-103019719:- chr4:102902856:- chr4:103806205-103940876:- chr4:103824013:- FOXO3 ENSG00000118689.15 protein_coding + - chr6:108559835-108684774:+ chr6:108639609:- chr6:108881038-109005977:+ chr6:108960812:- chr4:102899286,chr4:102899290 chr6:108640795,chr6:108640796 NA NA chr4:103820443,chr4:103820447 chr6:108961998,chr6:108961999 NA NA sense antisense unknown intron intron translocation/5'-5' medium none Sodium/hydrogen_exchanger_family(89%)| Na_H_Exchanger(83%)| 1 1 8 3 11 unknown unknown upstream downstream duplicates(1) GCCTATTCCTGTCTGCTGGCTTCAGGCTAGCTTCTACACAAAGAATATCAAGCTGGTTCCAGGAA___CTTTATCCTCTTCCACCGTTCTCTGCTGCTAACATAAAATTGGCTAAGGTTCAGCTCTTTCTCTTGTTCTTCAGTTTCGAGTTA|CTGTTTGAGGCAGGGTCCACCTCCACTTGCTCCTTTCTGAAGGGCCACTGTCATTGCTGTCACCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6553 FHIT::PSME3 ENSG00000189283.11::ENSG00000131467.12 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:60821919:- chr3:59733003-61237133:- chr3:60807613:- PSME3 ENSG00000131467.12 protein_coding + + chr17:42824385-42843760:+ chr17:42834344:+ chr17:40976402-40995777:+ chr17:40986361:+ chr3:60625430,chr3:60625425,chr3:60625428,chr3:60625432 chr17:42831760,chr17:42831761,chr17:42831758,chr17:42831758 NA NA chr3:60611163,chr3:60611158,chr3:60611161,chr3:60611165 chr17:40983777,chr17:40983778,chr17:40983775,chr17:40983775 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Proteasome_activator_pa28_alpha_subunit(94%),Proteasome_activator_pa28_beta_subunit(100%) |PA28_alpha(42%),PA28_beta(100%) 1 1 0 15 2258 ENST00000492590.6 ENST00000541124.5 upstream upstream none CTAGGAATACCTGCCTGCTTAGACCCTCTATAAAAGCTCTGTGCATCCTGCCACTGAGGACTCCGAAGAGGTAGCAGTCTTCTGAAAG|GTTGATTCTTTCAGGGAGCGGATCACAAGTGAGG...GAAG___GAACCAATCTTAAACATCCATGACCTAACTCAGATCCACTCTGACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCATGATGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6559 ARRDC1::EHMT1 ENSG00000197070.14::ENSG00000181090.21 SW48 SRR8615504 SRR8670708 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARRDC1 ENSG00000197070.14 protein_coding + + chr9:137605685-137615360:+ chr9:137605835:+ chr9:140500137-140509812:+ chr9:140500287:+ EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137728349:+ chr9:140513444-140764468:+ chr9:140622801:+ chr9:137610905,chr9:137610904 chr9:137718224,chr9:137718215 NA NA chr9:140505357,chr9:140505356 chr9:140612676,chr9:140612667 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through low none Arrestin_(or_S-antigen)__N-terminal_domain(25%)|Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Pre-SET_motif(100%),SET_domain(100%) Arrestin_N(1%),Vps26(1%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Pre-SET(100%),SET(100%) 3 3 2 242 42 ENST00000483563.5 ENST00000460843.6 downstream upstream duplicates(21) CGTCGCTGCGCGGCTGGCCGGTGAGGCCGCGGCATGGGGCGAGTGCAGCTCTTCGAGATCAGCCTGAGCCACGGCCGCGTCGTCTACAGCCCCGGGGAGCCGTTGGCTGGGACCGTGCGCGTGCGCCTGGGGGCACCGCTGCCGTTCCGAG|CATGCAGCCAGTAAAGATCCCAGAGAAGTTCGAGAAGCTAGAGATCATAAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTTTGGACGACAGCAGCTTTTACCCCCCTTCCCATCCCTTCATCAGTCGCTACCTCAGAACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-602 chr9:137838419-137838516:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6560 XPO4::EEF1AKMT1 ENSG00000132953.18::ENSG00000150456.11 SW48 SRR8615504 SRR8670708 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XPO4 ENSG00000132953.18 protein_coding - - chr13:20777329-20903048:- chr13:20787481:- chr13:21351468-21477187:- chr13:21361620:- EEF1AKMT1 ENSG00000150456.11 protein_coding - - chr13:20728731-20773961:- chr13:20757617:- chr13:21302870-21348100:- chr13:21331756:- chr13:20786864,chr13:20786867 chr13:20766563,chr13:20766563 NA NA chr13:21361003,chr13:21361006 chr13:21340702,chr13:21340702 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Probable_N6-adenine_methyltransferase(100%) |N6-adenineMlase(100%) 3 0 1 146 76 ENST00000255305.11 ENST00000382758.6 upstream downstream duplicates(41),mismatches(1) AAACCTAATTCTGCCCTTGATGTCACAGGATCTCTTGAAG___TTTCCAACCCTTTGTAATCAGTACTACAAATTAATCACATTTATCTGTGAGATTTTTCCTGAAAAAATACCACAGCTTCCTGAGGATCTGTTTA...GTGCAAAAGCACAAGAAACAGACTCACCACTTTTTCTAGCAACACGGCACTTTCTTAAG|GTTATAAACAACTTGTGAAATGAGTGATTTGGAAGATGATGAGACACCCCAGCTTTCTGCCCATGCCTTAGCAGCTCTCCAGGAATTTTATGCTGAGCAAAAGCAACAAATTGAGCCAGGCGAGGATGATAAATATAACATTGGAATAATAGAAGAGAATTGG___GTGCCATCATGG AKAQETDSPLFLATRHFLK|vinnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6563 ENSG00000283411::EHMT1 ENSG00000283411.1::ENSG00000181090.21 SW48 SRR8615504 SRR8670708 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283411 ENSG00000283411.1 lncRNA + + chr9:137605744-137711018:+ chr9:137605835:+ chr9:140500196-140605470:+ chr9:140500287:+ EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137728349:+ chr9:140513444-140764468:+ chr9:140622801:+ chr9:137610905,chr9:137610904 chr9:137718224,chr9:137718215 NA NA chr9:140505357,chr9:140505356 chr9:140612676,chr9:140612667 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Pre-SET_motif(100%),SET_domain(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Pre-SET(100%),SET(100%) 1 3 0 242 42 ENST00000637510.1 ENST00000460843.6 downstream upstream duplicates(8) CGCGTCGTCTACAGCCCCGGGGAGCCGTTGGCTGGGACCGTGCGCGTGCGCCTGGGGGCACCGCTGCCGTTCCGAG|CATGCAGCCAGTAAAGATCCCAGAGAAGTTCGAGAAGCTAGAGATCATAAGGAACCAAAAGAGGAGATCAACAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-602 chr9:137838419-137838516:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6575 TUFT1::CTXND2 ENSG00000143367.17::ENSG00000283324.1 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUFT1 ENSG00000143367.17 protein_coding + + chr1:151540305-151583583:+ chr1:151540426:+ chr1:151512781-151556059:+ chr1:151512902:+ CTXND2 ENSG00000283324.1 protein_coding + + chr1:150887136-150913292:+ chr1:150912242:+ chr1:150859612-150885768:+ chr1:150884718:+ chr1:151546238,chr1:151546115,chr1:151546237 chr1:150908085,chr1:150907703,chr1:150908081 NA NA chr1:151518714,chr1:151518591,chr1:151518713 chr1:150880561,chr1:150880179,chr1:150880557 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Cortexin_of_kidney(100%) |Cortexin(100%) 300 300 209 1945 652 ENST00000392712.7 ENST00000636087.1 downstream upstream duplicates(197),low_entropy(7),mismatches(33) AGCGGGGTGGACAAGTGGCGTGTGTGCTGCGACCCCGAGGGAAGATGAACGGGACGCGGAACTGGTGTACCCTGGTGGACGTGCACCCAGAGGACCAGGCGGCG|GAATATGACAAATCTGAAGCTATACCTGAGGAATTAGCTGGAGCTGGACAACAGTAACGAGGTGCAAGTCCCCATGGAAGATTCAAGCCTGTCCAGTGGTGTTGATGTGGACAAAGGCTTTGCCATTGCCTTTGTTGTTCTTCTGTTTCTGTTCCTAATAGTGATGATTTTTCGGTGTGCCAAGCTGGTGAAGAATCCCTACAAGGCCAGCTCCAC MNGTRNWCTLVDVHPEDQAA|eydkseaipeelagagqq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6576 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 616 TRUE 1132 TRUE 420 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27495680:+ chr12:27599669-27655118:+ chr12:27648613:+ chr12:27527208,chr12:27527208 chr12:27493125,chr12:27493122 NA NA chr12:27680141,chr12:27680141 chr12:27646058,chr12:27646055 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |TMCO5_family(37%) |TMCO5(20%) 81 60 74 285 219 ENST00000537927.5 ENST00000535986.2 downstream upstream duplicates(12),mismatches(12) TCCCAGCTCGGTGCCTGCCCGGATTCCTGACATGGTGTAGTGCAGGCAGGGTGGGGAAAGGACGGGGAAGGACTCGTGTGCTGCGAGCTGGCGGCCGGGCCGGAGTGCTGGGGCTTTGAACTCCGAGAGGAGGTGGACCAGAACTTTTGGAACTAGTGCCGGCGGCTCTCCACCCCCCAG|GACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATG___GAAACGTGCACTGAGGATTTTCATCATGTTTGATGTCCTCACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6577 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 617 TRUE 1132 TRUE 420 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27494300:+ chr12:27599669-27655118:+ chr12:27647233:+ chr12:27527208,chr12:27527208 chr12:27493125,chr12:27493122 NA NA chr12:27680141,chr12:27680141 chr12:27646058,chr12:27646055 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |TMCO5_family(42%) |TMCO5(24%) 14 26 85 285 62 ENST00000540114.5 ENST00000535986.2 downstream upstream duplicates(3),low_entropy(1),mismatches(7) TGTCAGCTCCCAGCTCGGTGCCTGCCCGGATTCCTGACATGGTGTAGTGCAGGCAGGGTGGGGAAAGGACGGGGAAGGACTCGTGTGCTGCGAGCTGGCGGCCGGGCCGGAGTGCTGGGGCTTTGAACTCCGAGAGGAGGTGGACCAGAACTTTTGGAACTAGTGCCGGCGGCTCTCCACCCCCCAG|GTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAG___GACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 6578 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 618 TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237756187:+ chr2:238536230-238722325:+ chr2:238664830:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553566:+ chr2:238394071-238463965:+ chr2:238462209:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none LRRFIP_family(56%)| LRRFIP(73%)| 18 55 113 1092 320 ENST00000308482.14 ENST00000264605.8 downstream upstream duplicates(3),mismatches(9) ACAAACTTCATGTACCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAA___GAATTTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAG|AAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCT TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE|KPVVAHQS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6579 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 619 TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237757548:+ chr2:238536230-238722325:+ chr2:238666191:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553566:+ chr2:238394071-238463965:+ chr2:238462209:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none LRRFIP_family(58%)| LRRFIP(76%)| 22 18 129 61 320 ENST00000308482.14 ENST00000264605.8 downstream upstream duplicates(2),mismatches(9) ACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAG___GAAATCCGACAGCTACAGCAGAAACAGGCGAGTTCTATCAGGGAGATTTCTGATCTTCAGGAAACAATAGAGTGGAAAGACAAAAAGATAGGG|AAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTTCC AHSILQFQFAEVKEALKQREEMLEEIRQLQQKQASSIREISDLQETIEWKDKKIG|KPVVAHQS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6580 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237756187:+ chr2:238536230-238722325:+ chr2:238664830:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553689:+ chr2:238394071-238463965:+ chr2:238462332:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none LRRFIP_family(56%)| LRRFIP(73%)| 3 1 49 1092 389 ENST00000308482.14 ENST00000434770.1 downstream upstream duplicates(1),mismatches(2) ACAAACTTCATGTACCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAA___GAATTTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAG|TCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCTTGGCTTTCTTATGTTGCTTTCATGAATGGA TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE|spsq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6581 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237756187:+ chr2:238536230-238722325:+ chr2:238664830:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553097:+ chr2:238394071-238463965:+ chr2:238461740:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none LRRFIP_family(56%)| LRRFIP(73%)| 0 2 119 1092 5 ENST00000308482.14 ENST00000432475.5 downstream upstream duplicates(2),mismatches(7) CCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAA___GAATTTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAG|ATGAAGGAGTGGCCCCAACCAATGTGATCAGTCGCAGGAGGCAACCAATCAGAGGCTGAAGGGAAGTTACAAAGTTACACATGAAGACTTGGCCGATGACCAGTCTGGTTGGTTGCGGGAGGGGACCAATCCGAG___AAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCA QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE|mkewpqpm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6582 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237753479:+ chr2:238536230-238722325:+ chr2:238662122:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553566:+ chr2:238394071-238463965:+ chr2:238462209:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none LRRFIP_family(49%)| LRRFIP(69%)| 1 0 57 891 320 ENST00000244815.9 ENST00000264605.8 downstream upstream mismatches(3) ACTTCCTCTCGGAGAGGCAGCGGAGACACCTCCATCTCCATCGACACCGAGGCATCCATCAGGGAAATCAAG___GACTCTCTAGCAGAAGTTGAAGAGAAATATAAGAAGGCTATGGTTTCCAATGCTCAGCTAGACAATGAAAAGACAAACTTCATGTACCAGGTTGATACCCTAAAAGATATGTTGCTGGAGCTTGAAGAACAGCTGGCTGAATCTAGGCGGCAGTACGAAGAGAAAAACAAA|AAACCTGTGGTGGCCCACCAGTCCTAACGGGACAGGACAGAGAGACAGAGCAGCCCTGCACTGTTTTCCCTCCACCACAGCCATCCTGTCCCTCATTGGCTCTGTGCTTTCCACTATACACAGTCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTT TSSRRGSGDTSISIDTEASIREIKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNK|KPVVAHQS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6583 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237757548:+ chr2:238536230-238722325:+ chr2:238666191:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553689:+ chr2:238394071-238463965:+ chr2:238462332:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none LRRFIP_family(58%)| LRRFIP(76%)| 0 1 56 61 389 ENST00000308482.14 ENST00000434770.1 downstream upstream duplicates(1),mismatches(2) AAA___GAATTTGAAAGGGAAAAACACGCCCACAGTATACTGCAATTTCAGTTTGCTGAAGTCAAGGAGGCCCTGAAGCAAAGAGAGGAAATGCTCGAG___GAAATCCGACAGCTACAGCAGAAACAGGCGAGTTCTATCAGGGAGATTTCTGATCTTCAGGAAACAATAGAGTGGAAAGACAAAAAGATAGGG|TCACCGTCCCAATGAGAAACAAGAAGGAGCACCCTCCACATGGACTCCCACCTGCAAGTGGACAGCGACATTCAGTCCTGCACTGCTCACCTGGGTTTACTGATGACTCCTGGCTGCCCCACCATCCTCTCTGATCTGTGAGAAACAGCTAAGCTGCTGTGACTTCCCTTTAGGACAATGTTGTGTAAATCTTTGAAGGACACACCGAAGACCTTTATACTGTGATCTTTTACCCCTTTCACTCTTGGCTTTCTTATGTTGCTT KEFEREKHAHSILQFQFAEVKEALKQREEMLEEIRQLQQKQASSIREISDLQETIEWKDKKIG|spsq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6584 UBE2G1::ZZEF1 ENSG00000132388.13::ENSG00000074755.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 620 TRUE 1134 TRUE 422 UBE2G1 ENSG00000132388.13 protein_coding - - chr17:4269259-4366675:- chr17:4307021:- chr17:4172554-4269970:- chr17:4210316:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4009757:- chr17:3907739-4046324:- chr17:3913051:- chr17:4305497 chr17:4011845 NA NA chr17:4208792 chr17:3915139 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Ubiquitin-conjugating_enzyme(26%)| UQ_con(71%)| 48 80 42 158 227 ENST00000396981.7 ENST00000381638.7 upstream downstream duplicates(6),mismappers(7),mismatches(16) CCCGGGCCCTCGGCAGGGAGGATGACGGAGCTGCAGTCGGCACTGCTACTGCGAAGACAGCTGGCAG___AACTCAACAAAAATCCAGTGGAAGGCTTTTCTGCAGGTTTAATAGATGACAATGATCTCTACCGATGGGAAGTCCTTATTATTGGCCCTCCAGATACACTTTA|TGACCTGTGTGACCTTGCGCTGTTGAAGCCCCTGTGGCAGCTCTTTACCCACATGGAGTACGGCCTGTTTGAGGACGTGACGCAGCCCGGCATCCTCCTTCCCCTGCATCGTGCCCTCACTGAGCTCTTCTTCGTCACCGAGAACCGTGCCCAG___GAGCTTGGCGTGCTGCAGGATTACCTGCTGGCCCTAACCACGGACGACCACCTTCTCCGCTGTGCGGCACAG MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLy|DLCDLALLKPLWQLFTHMEYGLFEDVTQPGILLPLHRALTELFFVTENRAQELGVLQDYLLALTTDDHLLRCAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6585 UBE2G1::ZZEF1 ENSG00000132388.13::ENSG00000074755.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1134 TRUE 422 UBE2G1 ENSG00000132388.13 protein_coding - - chr17:4269259-4366675:- chr17:4307021:- chr17:4172554-4269970:- chr17:4210316:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4008954:- chr17:3907739-4046324:- chr17:3912248:- chr17:4305497 chr17:4011845 NA NA chr17:4208792 chr17:3915139 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion/read-through medium none Ubiquitin-conjugating_enzyme(26%)| UQ_con(71%)| 1 0 13 158 334 ENST00000396981.7 ENST00000381638.7 upstream downstream duplicates(1),mismatches(9) CGCCAGCCCGGGCCCTCGGCAGGGAGGATGACGGAGCTGCAGTCGGCACTGCTACTGCGAAGACAGCTGGCAG___AACTCAACAAAAATCCAGTGGAAGGCTTTTCTGCAGGTTTAATAGATGACAATGATCTCTACCGATGGGAAGTCCTTATTATTGGCCCTCCAGATACACTTTA|GAGCTTGGCGTGCTGCAGGATTACCTGCTGGCCCTAACCACGGACGACCACCTTCTCCGCTGTGCGGCACAG___GCTCTGCAGAACATTGCTGCCATCAGCCTGGCCATCAACTACCCAAACAAGGCCACCCGCCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6586 UBE2G1::ZZEF1 ENSG00000132388.13::ENSG00000074755.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1134 TRUE 422 UBE2G1 ENSG00000132388.13 protein_coding - - chr17:4269259-4366675:- chr17:4366271:- chr17:4172554-4269970:- chr17:4269566:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4009757:- chr17:3907739-4046324:- chr17:3913051:- chr17:4305497 chr17:4011845 NA NA chr17:4208792 chr17:3915139 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Ubiquitin-conjugating_enzyme(4%)| UQ_con(0%)| 0 1 12 114 227 ENST00000396981.7 ENST00000381638.7 upstream downstream duplicates(1),mismatches(4) GCCCGGCCTTCCTCGGCTCCGGCGCTCCGGTCGCGGGGCCCGGGTTCCTCGGCACACCCCGCTCCAGCCGCCCCCAGAGCCTGTCCCCAGCCCTTCGGAAGCCCCGGCGCCAGCCCGGGCCCTCGGCAGGGAGGATGACGGAGCTGCAGTCGGCACTGCTACTGCGAAGACAGCTGGCAG|TGACCTGTGTGACCTTGCGCTGTTGAAGCCCCTGTGGCAGCTCTTTACCCACATGGAGTACGGCCTGTTTGAGGACGTGACGCAGCCCGGCATCCTCCTTCCCCTGCATCGTGCCCTCACTGAGCTCTTCTTCGTCACCGAGAACCGTGCCCAG___GAGCTTGGCGTGCTGCAGGATTACCTGCTGGCCCTAACCACGGACGACC MTELQSALLLRRQLA|vtcvtlrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6587 MTCH1::MIDEAS-AS1 ENSG00000137409.21::ENSG00000259065.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1135 TRUE 423 MTCH1 ENSG00000137409.21 protein_coding - - chr6:36965807-36986298:- chr6:36985853:- chr6:36933583-36954074:- chr6:36953629:- MIDEAS-AS1 ENSG00000259065.3 lncRNA + + chr14:73787355-73803300:+ chr14:73789027:+ chr14:74254058-74270003:+ chr14:74255730:+ chr6:36981658,chr6:36981664 chr14:73788147,chr14:73788141 NA NA chr6:36949434,chr6:36949440 chr14:74254850,chr14:74254844 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none Mito_carr(0%)| 20 101 48 700 307 ENST00000695055.1 ENST00000556194.2 upstream upstream duplicates(8),mismatches(15) CGAGCTCGCGATCCACCGCCCGCGCACCGCGCACATCCTCGCCACCCTCGGCCTGCGGCTCAGCCCTCGGCCCGCAGGATGGATGGCGGGTCAGGGGGCCTGGGGTCTGGGGACAACGCCCCGACCACTGAGGCTCTTTTCGTGGCACTGGGCGCGGGCGTGACGGCGCTCAGCCATCCCCTGCTCTACGTGAAGCTGCTCATCCAG|GTGGCAGTTGCTGGAGTACCAGGGCACCAAGTGGAGGATGTGGTAGACAGCCTCTAAGATGCGCCCCCTGCCAATGATCTCTGCCTCCAG___GGAGGAGCTAGAAGGCAGAGAGAAAGCCACTCAGGACTTCCCATCCCAGAAGATAAAGGTGAGGAAAGCAGCAGCAGCAGCCACAGGCCAGTATTCCAGAGCAGCTTTGGGTTCCTG RARDPPPAHRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQ|vavagvpghqvedvvdsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6588 MTCH1::MIDEAS-AS1 ENSG00000137409.21::ENSG00000259065.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1135 TRUE 423 MTCH1 ENSG00000137409.21 protein_coding - - chr6:36965807-36986298:- chr6:36985853:- chr6:36933583-36954074:- chr6:36953629:- MIDEAS-AS1 ENSG00000259065.3 lncRNA + + chr14:73787355-73803300:+ chr14:73802885:+ chr14:74254058-74270003:+ chr14:74269588:+ chr6:36981658,chr6:36981664 chr14:73788147,chr14:73788141 NA NA chr6:36949434,chr6:36949440 chr14:74254850,chr14:74254844 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none Mito_carr(0%)| 4 19 23 700 448 ENST00000695055.1 ENST00000556194.2 upstream upstream duplicates(4),inconsistently_clipped(1),mismatches(5) GTCGAGGCTCGAGCTCGCGATCCACCGCCCGCGCACCGCGCACATCCTCGCCACCCTCGGCCTGCGGCTCAGCCCTCGGCCCGCAGGATGGATGGCGGGTCAGGGGGCCTGGGGTCTGGGGACAACGCCCCGACCACTGAGGCTCTTTTCGTGGCACTGGGCGCGGGCGTGACGGCGCTCAGCCATCCCCTGCTCTACGTGAAGCTGCTCATCCAG|GGAGGAGCTAGAAGGCAGAGAGAAAGCCACTCAGGACTTCCCATCCCAGAAGATAAAGGTGAGGAAAGCAGCAGCAGCAGCCACAGGCCAGTATTCCAGAGCAGCTTTGGGTTCCTGTCAAGACCTGCTTTGAGAAGGAGGTGGCTGTGGGGCTGGAGGGCTGGGCCTGTTCCTGAGCTGGCTGCTGGCAcCACAGCAATGAGGCAACATTGAGAACTGCGACACGAGGCCCAGTCCTGCTACTAAACCAACTGTGTGG VEARARDPPPAHRAHPRHPRPAAQPSARRMDGGSGGLGSGDNAPTTEALFVALGAGVTALSHPLLYVKLLIQ|ggarrqreshsglpipedkgeessssshrpvfqssfgflsrpalrrrwlwgwragpvpelaagttamrqh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6589 MTCH1::MIDEAS-AS1 ENSG00000137409.21::ENSG00000259065.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1135 TRUE 423 MTCH1 ENSG00000137409.21 protein_coding - - chr6:36965807-36986298:- chr6:36985807:- chr6:36933583-36954074:- chr6:36953583:- MIDEAS-AS1 ENSG00000259065.3 lncRNA + + chr14:73787355-73803300:+ chr14:73802885:+ chr14:74254058-74270003:+ chr14:74269588:+ chr6:36981658,chr6:36981664 chr14:73788147,chr14:73788141 NA NA chr6:36949434,chr6:36949440 chr14:74254850,chr14:74254844 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site translocation medium none none Mito_carr(0%)| 1 0 23 1 448 ENST00000695047.1 ENST00000556194.2 upstream upstream duplicates(7),mismatches(5) CGAGGCTCGAGCTCGCGATCCACCGCCCGCGCACCGCGCACATCCTCGCCACCCTCGGCCTGCGGCTCAGCCCTCGGCCCGCAGGATGGATGGCGGGTCAGGGGGCCTGGGGTCTGGGGACAACGCCCCGACCACTGAGGCTCTTTTCGTGGCACTGGGCGCGGGCGTGACGGCGCTCAGCCATCCCCTGCTCTACGTGAAGCTGCTCATCCAGGTGGGGGACCAGAGGCGCCGTAGGGAGATGGGAGGCTGATGTGAAG|GGAGGAGCTAGAAGGCAGAGAGAAAGCCACTCAGGACTTCCCATCCCAGAAGATAAAGGTGAGGAAAGCAGCAGCAGCAGCCACAGGCCAGTATTCCAGAGCAGCTTTGGGTTCCTGTCAAGACCTGCTTTGAGAAGGAGGTGGCTGTGGGGCTGGAGGGCTGGGCCTGTTCCTGAGCTGGCTGCTGGCAcCACAGCAATGAGGCAACATTGAGAACTGCGACACGAGGCCCAGTCCTGCTACTAAACCAACTGTGTGGACTTGCATAGTCACTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6590 SPINT1::HIF1A ENSG00000166145.15::ENSG00000100644.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 621 TRUE 1136 TRUE 424 SPINT1 ENSG00000166145.15 protein_coding + + chr15:40844018-40858207:+ chr15:40845029:+ chr15:41136216-41150405:+ chr15:41137227:+ HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61746934:+ chr14:62162231-62214977:+ chr14:62213652:+ chr15:40852646,chr15:40852852,chr15:40852644,chr15:40852645 chr14:61745369,chr14:61745405,chr14:61745369,chr14:61745365 NA NA chr15:41144844,chr15:41145050,chr15:41144842,chr15:41144843 chr14:62212087,chr14:62212123,chr14:62212087,chr14:62212083 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none MANEC_domain(100%)|HIF-1_alpha_C_terminal_transactivation_domain(100%) MANEC(100%),PAN_4(100%)|HIF-1a_CTAD(100%) 42 26 56 254 3561 ENST00000344051.8 ENST00000337138.9 downstream upstream duplicates(4),mismatches(7) TCAGCAACGGAGCTACCTTCCTGGAGTCCCCCACCGTGCGCCGGGGCTGGGACTGCGTGCGCGCCTGCTGCACCACCCAGAACTGCAACTTGGCGCTAGTGGAGCTGCAGCCCGACCGCGGGGAGGACGCCATCGCCGCCTGCTTCCTCATCAACTGCCTCTACGAGCAGAACTTCGTGTGCAAGTTCGCGCCCAGGGAGGGCTTCATCAACTACCTCACGAGGGAAGTGTACCGCTCCTACCGCCAGCTGCGGACCCAGGGCTTTGGAG|ATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAGTTAACTGAGCTTTTTCTTAATTTCATTCCTTTTTTTGGACACTGGTGGCTCAcTACCTAAAGCAGTCTATTTATATTTTCTACATCTAATTTTAGAAGCCTGGCTACAATACTGC SNGATFLESPTVRRGWDCVRACCTTQNCNLALVELQPDRGEDAIAACFLINCLYEQNFVCKFAPREGFINYLTREVYRSYRQLRTQGFG|dLACRLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense 6591 SPINT1::HIF1A ENSG00000166145.15::ENSG00000100644.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 622 TRUE 1136 TRUE 424 SPINT1 ENSG00000166145.15 protein_coding + + chr15:40844018-40858207:+ chr15:40845029:+ chr15:41136216-41150405:+ chr15:41137227:+ HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61745691:+ chr14:62162231-62214977:+ chr14:62212409:+ chr15:40852646,chr15:40852852,chr15:40852644,chr15:40852645 chr14:61745369,chr14:61745405,chr14:61745369,chr14:61745365 NA NA chr15:41144844,chr15:41145050,chr15:41144842,chr15:41144843 chr14:62212087,chr14:62212123,chr14:62212087,chr14:62212083 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none MANEC_domain(100%)|HIF-1_alpha_C_terminal_transactivation_domain(100%) MANEC(100%),PAN_4(100%)|HIF-1a_CTAD(100%) 11 13 72 254 4250 ENST00000344051.8 ENST00000337138.9 downstream upstream duplicates(1),low_entropy(1),mismatches(2) ACGCCTCGGTCAGCAACGGAGCTACCTTCCTGGAGTCCCCCACCGTGCGCCGGGGCTGGGACTGCGTGCGCGCCTGCTGCACCACCCAGAACTGCAACTTGGCGCTAGTGGAGCTGCAGCCCGACCGCGGGGAGGACGCCATCGCCGCCTGCTTCCTCATCAACTGCCTCTACGAGCAGAACTTCGTGTGCAAGTTCGCGCCCAGGGAGGGCTTCATCAACTACCTCACGAGGGAAGTGTACCGCTCCTACCGCCAGCTGCGGACCCAGGGCTTTGGAG|GGAACATTATTACAGCAGCCAGACGATCATGCAGCTACTACATCACTTTCTTGGAAACGTGTAAAAGGATGCAAATCTAGTGAACAGAATGGAATGGAGCAAAAGACAATTATTTTAATACCCTCTG___ATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCA ASVSNGATFLESPTVRRGWDCVRACCTTQNCNLALVELQPDRGEDAIAACFLINCLYEQNFVCKFAPREGFINYLTREVYRSYRQLRTQGFG|gniitaarrscsyyitfletckrmqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense 6592 LAMC2::NR6A1 ENSG00000058085.15::ENSG00000148200.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LAMC2 ENSG00000058085.15 protein_coding + + chr1:183186238-183245127:+ chr1:183231103:+ chr1:183155373-183214262:+ chr1:183200238:+ NR6A1 ENSG00000148200.17 protein_coding - + chr9:124517275-124771311:- chr9:124744527:+ chr9:127279554-127533590:- chr9:127506806:+ chr1:183231617,chr1:183231617 chr9:124737950,chr9:124737947 NA NA chr1:183200752,chr1:183200752 chr9:127500229,chr9:127500226 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%)| Laminin_B(100%),Laminin_EGF(100%)| 24 28 47 595 149 ENST00000264144.5 unknown downstream upstream duplicates(3),mismatches(7) TATCCACAACACAGCCGGCATCTACTGCGACCAGTGCAAAGCAGGCTACTTCGGGGACCCATTGGCTCCCAACCCAGCAGACAAGTGTCGAG___CTTGCAACTGTAACCCCATGGGCTCAGAGCCTGTAGGATGTCGAAGTGATGGCACCTGTGTTTGCAAGCCAGGATTTGGTGGCCCCAACTGTGAGCATGGAGCATTCAGCTGTCCAGCTTGCTATAATCAAGTGAAGATTCAG|TGCATGTTCTGCAACAGCCGGATGGATGGGAACTTAGCATAATCTCAAAGAGCAACCCTGATGCTCCCATAACAGCAGGACCTCAACGTCCAAGAAGAATACCACACCTTACTTGAGCCCATTTACAAGTCACCTCCTGAAAAATCCAAGATGCCTGTCAGAAGCAGCTACTGAGGGAAGTGAAGATGTTTTTATTTGTT IHNTAGIYCDQCKAGYFGDPLAPNPADKCRACNCNPMGSEPVGCRSDGTCVCKPGFGGPNCEHGAFSCPACYNQVKIQ|cmfcnsrmdgnla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6594 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 623 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28812209:- chr17:27082998-27182250:- chr17:27139227:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%) |IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%) 19 25 48 85 419 ENST00000452648.8 ENST00000527372.7 upstream downstream duplicates(4),mismappers(2),mismatches(7) CGGCAGCCGGCTGGGGGAGGGGGTGTCGGCGCACCGCGGAGTCCTGCGCTCCGTGAGCCTGGCACCCGGAGCAGCCGCCTCCCCCTCCCCCTGCCTAGACCGCTAGAAGCCCCCTCTCTTCCATCCTCCCGGGGCGGGGGTGAGCTGGGCTCAGCTGCCCAAGGCGGGCGGGGCGGAGCCAGGAGCCCCACGGAGCGCTGCGGAGCGAACCTCACCTTTCCAGGGCGCAAG|CAGCAAAGTGGGGCACCAAGGCCCTGTGCTAAGCACTCATAATCCTCTGGGGGTGCTACCCCTACAAACAGCACCCCCACCATGTTTAACCTAATGAAGAAAGACAAGGACAAAGATGGCGGGCGGAAGGAGAAGAAGGAGAAAAAGGAGAAAAAGGAGCGGATGTCAGCGGCAGAGCTTCGGAGCCTGGAGGAGATGAGCCTGCGACGTGGCTTCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6595 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28812158:- chr17:27082998-27182250:- chr17:27139176:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%) |IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%) 1 2 50 8 419 ENST00000452648.8 ENST00000527372.7 upstream downstream duplicates(3),mismatches(7) CGGCAGCCGGCTGGGGGAGGGGGTGTCGGCGCACCGCGGAGTCCTGCGCTCCGTGAGCCTGGCACCCGGAGCAGCCGCCTCCCCCTCCCCCTGCCTAGACCGCTAGAAGCCCCCTCTCTTCCATCCTCCCGGGGCGGGGGTGAGCTGGGCTCAGCTGCCCAAGGCGGGCGGGGCGGAGCCAGGAGCCCCACGGAGCGCTGCGGAGCGAACCTCACCTTTCCAGGGCGCAAGGTGTGTGTGTGCTTTTTCTAACGCGACCCCGACTTCAGCCGACTTAACCTT|CAGCAAAGTGGGGCACCAAGGCCCTGTGCTAAGCACTCATAATCCTCTGGGGGTGCTACCCCTACAAACAGCACCCCCACCATGTTTAACCTAATGAAGAAAGACAAGGACAAAGATGGCGGGCGGAAGGAGAAGAAGGAGAAAAAGGAGAAAAAGGAGCGGATGTCAGCGGCAGAGCTTCGGAGCCTGGAGGAGATGAGCCTGCGACGTGGCTTCTTCAACCTGAACCGCTCCTCCAAGCGTGAATCCAAGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6596 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 624 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28842682:- chr17:27082998-27182250:- chr17:27169700:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%) |IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%) 1 43 3 55 419 ENST00000583522.6 ENST00000527372.7 upstream downstream mismatches(1) TGAGGGGCCGGGCAGTGGAGAAGTGGTGGCGGCGGGCGGCGGGCGGCAAAGGAGCAGCCATGAGGGCCGGGCCCAGTCACCGACC|CAGCAAAGTGGGGCACCAAGGCCCTGTGCTAAGCACTCATAATCCTCTGGGGGTGCTACCCCTACAAACAGCACCCCCACCATGTTTAACCTAATGAAGAAAGACAAGGACAAAGATGGCGGGCGGAAGGAGAAGAAGGAGAAAAAGGAGAAAAAGGAGCGGATGTCAGCGGCAGAGCTTCGGAGCCTGGAGGAGATGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6597 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 625 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28834293:- chr17:27082998-27182250:- chr17:27161311:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Myosin_head_(motor_domain)(100%),Myosin_tail(100%),PDZ_domain(100%) |IQ(100%),Myosin_head(100%),Myosin_tail_1(100%),PDZ(100%),PDZ_6(100%) 1 13 8 34 419 ENST00000583522.6 ENST00000527372.7 upstream downstream low_entropy(3),mismatches(1) CGGGCAGTGGAGAAGTGGTGGCGGCGGGCGGCGGGCGGCAAAGGAGCAGCCATGAGGGCCGGGCCCAGTCACCGACC___GTGCTGAGGAGTCATGGAAGAGTTTTTAAACCAG|CAGCAAAGTGGGGCACCAAGGCCCTGTGCTAAGCACTCATAATCCTCTGGGGGTGCTACCCCTACAAACAGCACCCCCACCATGTTTAACCTAATGAAGAAAGACAAGGACAAAGATGGCGGGCGGAAGGAGAAGAAGGAGAAAAAGGAGAAAAAGGAGCGGATGTCAGCGGCAGAGCTTCGGAGCCTGGAGGAGATGAGCCTGCGACGTGGCTTCTTCAACCTGAACCGCTCCTCCAAGCGTGAATCCAAGAC...ATCTCCAACCCCATCCCCATCAAGGTGGCCAGCGGCTCTGACCTGCACCTGACTGACATTGACTCCGATAGTAACCGGGGCAGCGTCATCCTGGACTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6598 B4GALT1::SOX5 ENSG00000086062.13::ENSG00000134532.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA B4GALT1 ENSG00000086062.13 protein_coding - - chr9:33104082-33167356:- chr9:33120419:- chr9:33104080-33167354:- chr9:33120417:- SOX5 ENSG00000134532.20 protein_coding - + chr12:23529504-24562544:- chr12:24186881:+ chr12:23682438-24715478:- chr12:24339815:+ chr9:33116215,chr9:33116215,chr9:33116218 chr12:24128144,chr12:24128149,chr12:24128141 NA NA chr9:33116213,chr9:33116213,chr9:33116216 chr12:24281078,chr12:24281083,chr12:24281075 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none N-terminal_domain_of_galactosyltransferase(16%),N-terminal_region_of_glycosyl_transferase_group_7(97%)| Glyco_transf_7C(0%),Glyco_transf_7N(74%)| 26 35 29 364 83 ENST00000379731.5 unknown upstream upstream duplicates(4),mismappers(1),mismatches(5) ATCTATGTTATCAACCAG___GCGGGAGACACTATATTCAATCGTGCTAAGCTCCTCAATGTTGGCTTTCAAGAAGCCTTGAAGGACTATGACTACACCTGCTTTGTGTTTAGTGACGTGGACCTCATTCCAATGAATGACCATAATGCGTACAGGTGTTTTTCACAGCCACGGCACATTTCCGTTGCAATGGATAAGTTTGGATTCAG|GATTTCTCCAATGAACACAAAATGCTTTTGTAAAAAAGAAAACATGATAAAACACATT?AAAAAAAGTAAAAGTAGGTGAAAATGTCAATGAAATTCTGGTTTGTAGAACCATCAAAACTTGGAAAAGTTTAATAAGACCACCAGGAAGAAGAAGAAGGGCAAGTTTCCAAACTGATTTCACAGGGCCAGGAGGGCAGGCCACTGAGATAGGTAAACCATGGAAGCACAATCAGTCCCATCTCATGGATATTCTACCTGGGGCTTTTACTTT IYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFr|ispmntkcfckkenmikhi?kk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6599 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 626 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73260983:- chr17:71244588-71258491:- chr17:71257122:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Family_104(0%)|RNA-binding__Nab2-type_zinc_finger(100%),Zinc_finger_domain(100%) FAM104(0%)|zf-CCCH(100%),zf-CCCH_2(100%),zf-CCCH_3(100%),zf_CCCH_4(100%) 25 17 45 531 44 ENST00000405159.8 ENST00000344935.8 upstream downstream duplicates(2),mismappers(1),mismatches(16) ACGGGTCCGACTGAGGGGTACTCGCCACCGGCTGCGTCCACCCGAGCGGCTGCGAGAGCCAAGGCCCGAGGGGGTGGGCGTGGCGGCCGCCGAAACACAACCCCCTCTGTTCCCTCTCTTCGCGGAGCGGCGCCGCGTAGCTTCCATCCGCCAGCTGCCATGAGCGAGCGCCTCCGTCCCAG|AGTCGGCCTCAGCTGTGTGCAACTTCTTCACTAAAGGGCTCTGTGAGAAAG___GGAAACTCTGCCCCTTCCGACATGACCGAGGGGAGAAGATGGTGGTATGCAAGCACTGGCTCCGGGGGCTCTGCAAGAAGGGTGATCACTGCAAGTTCCTGCACCAGTATGACCTCACCAGGATGCCTGAGTGCTACTTCTACT TGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPr|vglscvqllh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6600 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 627 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73257833:- chr17:71244588-71258491:- chr17:71253972:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Family_104(0%)|RNA-binding__Nab2-type_zinc_finger(85%),Zinc_finger_domain(100%) FAM104(0%)|zf-CCCH(100%),zf-CCCH_2(67%),zf-CCCH_3(55%),zf_CCCH_4(100%) 10 8 28 531 98 ENST00000405159.8 ENST00000344935.8 upstream downstream mismatches(8) ACGGGTCCGACTGAGGGGTACTCGCCACCGGCTGCGTCCACCCGAGCGGCTGCGAGAGCCAAGGCCCGAGGGGGTGGGCGTGGCGGCCGCCGAAACACAACCCCCTCTGTTCCCTCTCTTCGCGGAGCGGCGCCGCGTAGCTTCCATCCGCCAGCTGCCATGAGCGAGCGCCTCCGTCCCAG|GGAAACTCTGCCCCTTCCGACATGACCGAGGGGAGAAGATGGTGGTATGCAAGCACTGGCTCCGGGGGCTCTGCAAGAAGGGTGATCACTGCAAGTTCCTGCACCAGTATGACCTCACCAGGATGCCTGAGTGCTACTTCTACTCCAAGTTTG___GTCCTCTGTGTAAATACCGCCATGTCCCCAGAATAATGTGTCTCAACT TGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPr|etlplpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6601 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 628 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73252723:- chr17:71244588-71258491:- chr17:71248862:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Family_104(0%)|RNA-binding__Nab2-type_zinc_finger(34%) FAM104(0%)|zf-CCCH_2(16%) 4 1 3 531 102 ENST00000405159.8 ENST00000344935.8 upstream downstream mismatches(3) GTCCGACTGAGGGGTACTCGCCACCGGCTGCGTCCACCCGAGCGGCTGCGAGAGCCAAGGCCCGAGGGGGTGGGCGTGGCGGCCGCCGAAACACAACCCCCTCTGTTCCCTCTCTTCGCGGAGCGGCGCCGCGTAGCTTCCATCCGCCAGCTGCCATGAGCGAGCGCCTCCGTCCCAG|GTCCTCTGTGTAAATACCGCCATGTCCCCAGAATAATGTGTCTCAACTATTTAGTTGGCTTCTGCCCCGAGGGACCCAAGTGCCAATTTGCTCA___CCTTGCTTAACAGCCCGAAGAGAAACTTTTCCAAATGCCCAGAACCcGCAACAGAAGgCAACAGTCAAACTCCAG PTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPr|ssv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6603 SMG5::INSRR ENSG00000198952.8::ENSG00000027644.5 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1139 FALSE NA SMG5 ENSG00000198952.8 protein_coding - - chr1:156249224-156282825:- chr1:156265781:- chr1:156219015-156252616:- chr1:156235572:- INSRR ENSG00000027644.5 protein_coding - - chr1:156840063-156859117:- chr1:156843479:- chr1:156809855-156828909:- chr1:156813271:- chr1:156265192,chr1:156265202,chr1:156265200 chr1:156844643,chr1:156844645,chr1:156844645 NA NA chr1:156234983,chr1:156234993,chr1:156234991 chr1:156814435,chr1:156814437,chr1:156814437 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Est1_DNA/RNA_binding_domain(69%),Telomerase_activating_protein_Est1(100%)|Protein_kinase_domain(100%) EST1(100%),EST1_DNA_bind(82%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 0 0 582 71 ENST00000361813.5 ENST00000368195.4 upstream downstream mismatches(1) TGgAGACAAGCCTTCAGAGCCAG|AAACAGAACCCTGTATGCTTCTGTGAATCCAGAGTACTTCAGCGCCTCTGATAGTAGGTCTGGGAGTGGGTGGACAGGTGGTGTGGGAAAGGGAGACAGGAGAGGAGCAGAG gDKPSEP|etepcmll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Insulin receptor-related protein TK InsR P14616 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6604 FBXO42::PI4K2B ENSG00000037637.11::ENSG00000038210.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 629 TRUE 1140 TRUE 427 FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16294783:- chr1:16573335-16678975:- chr1:16621278:- PI4K2B ENSG00000038210.14 protein_coding + + chr4:25160663-25279204:+ chr4:25252321:+ chr4:25162285-25280826:+ chr4:25253943:+ chr1:16262754,chr1:16262756 chr4:25246039,chr4:25246037 NA NA chr1:16589249,chr1:16589251 chr4:25247661,chr4:25247659 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none F-box-like(100%),Galactose_oxidase__central_domain(71%)|Phosphatidylinositol_3-_and_4-kinase(100%) F-box(100%),F-box-like(100%),Kelch_3(0%),Kelch_4(94%),Kelch_5(91%)|PI3_PI4_kinase(100%) 27 19 31 204 200 ENST00000375592.8 ENST00000264864.8 upstream upstream mismatches(10) GCCCATCAGTGTTATCATGGTTTCATGAAGGCTGTCCAGGAAGGAAACATTCAGTGGGAGAGCCGTACCTATCCTTATCCTGGAACCCCAATCACTCAGCGCTTCTCGCACA___GTGCATGCTATTATGATGCTAATCAGTCTATGTATGTGTTTGGAGGCTGTACCCAGAGCAGCTGCAATGCTGCTTTCAATGACCTCTGGAGACTTGACCTAAACAGCAAAGAGTGGATCCGACCTTTGGCTTCAG|TAACTATTGGTACTTCAGAGATGAATGCATTCTTGGATGACCCAGAATTTGCtGATATTATGCTGAGAGCAGAGCAAGCAATAGAAGTTGGAATTTTTCCAGAAAGAATCTCTCAAGGTTCAAGTGGAAGTTACTTTGTGAAGGATCCTAAGAGG___AAAATTATTGGTGTGTTTAAACCCAAATCAGAAGAGCCTTATGGTCAACTCAATCCAAAATGGACCAAATATGTCCATAAGGTCTGCT AHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLAS|vTIGTSEMNAFLDDPEFADIMLRAEQAIEVGIFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKWTKYVHKVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6605 FBXO42::PI4K2B ENSG00000037637.11::ENSG00000038210.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1140 TRUE 427 FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16294783:- chr1:16573335-16678975:- chr1:16621278:- PI4K2B ENSG00000038210.14 protein_coding + + chr4:25160663-25279204:+ chr4:25255065:+ chr4:25162285-25280826:+ chr4:25256687:+ chr1:16262754,chr1:16262756 chr4:25246039,chr4:25246037 NA NA chr1:16589249,chr1:16589251 chr4:25247661,chr4:25247659 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none F-box-like(100%),Galactose_oxidase__central_domain(71%)|Phosphatidylinositol_3-_and_4-kinase(95%) F-box(100%),F-box-like(100%),Kelch_3(0%),Kelch_4(94%),Kelch_5(91%)|PI3_PI4_kinase(89%) 1 0 8 204 231 ENST00000375592.8 ENST00000512921.4 upstream upstream none GGAGTATATCCTGTCCTTTCTCTCACCGTATCAGGAACACAAAACTGCGGCCCTTGTCTGCAAACAGTGGTATCGACTTATCAAAG___GTGTAGCCCATCAGT...GCCGTACCTATCCTTATCCTGGAACCCCAATCACTCAGCGCTTCTCGCACA___GTGCATGCTATTATGATGCTAATCAGTCTATGTATGTGTTTGGAGGCTGTACCCAGAGCAGCTGCAAT...GACCTAAACAGCAAAGAGTGGATCCGACCTTTGGCTTCAG|AAAATTATTGGTGTGTTTAAACCCAAATCAGAAGAGCCTTATGGTCAACTCAATCCAAAATGGACCAAATATGTCCATAAGGTCTGCTGCCCTTGCTGCTTTGGCCGAGGCTGCCTGATTCCTAATCAGGtGTACCTTTCCGAAGCGGGTGCCTATCTTGTGGACAACAAGCTTCATCTGAGCATTGTACCTAAAACAAAG___GTGGTTTGGCTTGTCAGTGAGACATTTAACTATAATGCGAT DLNSKEWIRPLAS|enywcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6606 FBXO42::PI4K2B ENSG00000037637.11::ENSG00000038210.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1140 TRUE 427 FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16352255:- chr1:16573335-16678975:- chr1:16678750:- PI4K2B ENSG00000038210.14 protein_coding + + chr4:25160663-25279204:+ chr4:25252321:+ chr4:25162285-25280826:+ chr4:25253943:+ chr1:16262754,chr1:16262756 chr4:25246039,chr4:25246037 NA NA chr1:16589249,chr1:16589251 chr4:25247661,chr4:25247659 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Phosphatidylinositol_3-_and_4-kinase(100%) |PI3_PI4_kinase(100%) 0 1 0 282 200 ENST00000375592.8 ENST00000264864.8 upstream upstream none GAACCCGAGAGCGTGGAGCGGGCTGGGCCAG|TAACTATTGGTACTTCAGAGATGAATGCATTCTTGGATGACCCAGAATTTGCtGATATTATGCTGAGAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6607 SLC7A6::PLA2G15 ENSG00000103064.15::ENSG00000103066.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1141 TRUE 428 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ PLA2G15 ENSG00000103066.13 protein_coding + + chr16:68245304-68261058:+ chr16:68259146:+ chr16:68279207-68294961:+ chr16:68293049:+ chr16:68269279,chr16:68269279,chr16:68269279,chr16:68269274 chr16:68255295,chr16:68255296,chr16:68255298,chr16:68255287 NA NA chr16:68303182,chr16:68303182,chr16:68303182,chr16:68303177 chr16:68289198,chr16:68289199,chr16:68289201,chr16:68289190 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Lecithin:cholesterol_acyltransferase(45%) |LCAT(2%) 24 24 16 152 177 ENST00000618043.4 ENST00000219345.10 downstream upstream duplicates(9),mismatches(2) CCGAGCATCCTGGCGGCGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|GAGACAACAACCGGATCCCAGTCATCGGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCAGCTGTCTCCACCAGCTGGCTGCTGCCCTACAACTACACATGGTCACCTGAGAAGGTGTTCGTGCAGACACCCACAATCAACTACACACTGCGGGACTACCGCAAGTTCTTCCAGGACATCGGCTTTGAAGATGGCTGGCTCATGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 68300624 TRUE 68288822 FALSE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6608 SLC7A6::PLA2G15 ENSG00000103064.15::ENSG00000103066.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1141 TRUE 428 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ PLA2G15 ENSG00000103066.13 protein_coding + + chr16:68245304-68261058:+ chr16:68255766:+ chr16:68279207-68294961:+ chr16:68289669:+ chr16:68269279,chr16:68269279,chr16:68269279,chr16:68269274 chr16:68255295,chr16:68255296,chr16:68255298,chr16:68255287 NA NA chr16:68303182,chr16:68303182,chr16:68303182,chr16:68303177 chr16:68289198,chr16:68289199,chr16:68289201,chr16:68289190 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Lecithin:cholesterol_acyltransferase(68%) |LCAT(26%) 2 4 3 152 48 ENST00000618043.4 ENST00000219345.10 downstream upstream multimappers(2) CGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|ATGAAAACGGGCCCTACTTCCTGGCCCTCCGCGAGATGATCGAGGAGATGTACCAGCTGTATGGGGGCCCCGTGGTGCTGGTTGCCCACAGTATGGGCAACATGTACACGCTCTACTTTCTGCAGCGGCAGCCGCAGGCCTGGAAGGACAAGTATATCCGGGCCTTCGTGTCACTGGGTGCGCCCTGGGGGGGCGTGGCCAAGACCCTGCGCGTCCTGGCTTCAG___GAGACAACAACCGGATCCCAGTCATCGGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCAGCTGTCTCCACCAGCTGGCTGCTGCCCTACAACTACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 68300624 TRUE 68288822 FALSE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6609 SLC7A6::PLA2G15 ENSG00000103064.15::ENSG00000103066.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1141 TRUE 428 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ PLA2G15 ENSG00000103066.13 protein_coding + + chr16:68245304-68261058:+ chr16:68255891:+ chr16:68279207-68294961:+ chr16:68289794:+ chr16:68269279,chr16:68269279,chr16:68269279,chr16:68269274 chr16:68255295,chr16:68255296,chr16:68255298,chr16:68255287 NA NA chr16:68303182,chr16:68303182,chr16:68303182,chr16:68303177 chr16:68289198,chr16:68289199,chr16:68289201,chr16:68289190 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Lecithin:cholesterol_acyltransferase(55%) |LCAT(25%) 1 1 2 152 77 ENST00000618043.4 ENST00000413021.2 downstream upstream multimappers(2) CGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|CGGCAGCCGCAGGCCTGGAAGGACAAGTATATCCGGGCCTTCGTGTCACTGGGTGCGCCCTGGGGGGGCGTGGCCAAGACCCTGCGCGTCCTGGCTTCAG___GAGACAACAACCGGATCCCAGTCATCGGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCAGCTGTCTCCACCAGCTGGCTGCTGCCCTACAACTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 68300624 TRUE 68288822 FALSE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6610 SLC7A6::PLA2G15 ENSG00000103064.15::ENSG00000103066.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 630 TRUE 1141 TRUE 428 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68264576:+ chr16:68298419-68335726:+ chr16:68298479:+ PLA2G15 ENSG00000103066.13 protein_coding + + chr16:68245304-68261058:+ chr16:68259146:+ chr16:68279207-68294961:+ chr16:68293049:+ chr16:68269279,chr16:68269279,chr16:68269279,chr16:68269274 chr16:68255295,chr16:68255296,chr16:68255298,chr16:68255287 NA NA chr16:68303182,chr16:68303182,chr16:68303182,chr16:68303177 chr16:68289198,chr16:68289199,chr16:68289201,chr16:68289190 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Lecithin:cholesterol_acyltransferase(45%) |LCAT(2%) 0 7 0 67 177 ENST00000618043.4 ENST00000219345.10 downstream upstream none CGGCGGCGGCGGCGCGACCGAGCATCCTGGCGGCGCCGGGCCACTGGGAG|GAGACAACAACCGGATCCCAGTCATCGGGCCCCTGAAGATCCGGGAGCAGCAGCGGTCAGCTGTCTCCACCAGCTGGCTGCTGCCCTACAACTACACATGGTCACCTGAGAAGGTGTTCGTGCAGACACCCACAATCAAC...CTGTGAACTTGAAGAGTGCCCTGCAGTGCCAGGCCTGGCAGAGCCGCCAGGAGCACCAAGTGTTGCTGCAGGAGCTGCCAGGCAGCGAGCACATCGAGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 68300624 FALSE 68288822 FALSE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6614 STIM1::RALY ENSG00000167323.13::ENSG00000125970.12 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STIM1 ENSG00000167323.13 protein_coding + + chr11:3854527-4093210:+ chr11:3967682:+ chr11:3875757-4114440:+ chr11:3988912:+ RALY ENSG00000125970.12 protein_coding + - chr20:33993646-34108308:+ chr20:34076570:- chr20:32581452-32696114:+ chr20:32664376:- chr11:4007979,chr11:4007977 chr20:34083118,chr20:34083120 NA NA chr11:4029209,chr11:4029207 chr20:32670924,chr20:32670926 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 16 12 21 556 39 ENST00000526596.2 unknown downstream downstream duplicates(2),mismatches(7),multimappers(8) CAGAGCCTCAGCCATAGTCACAGTGAGAAGGCGACAGGAACCAGCTCGGGGGCCAACTCTGAGGAGTCCACTGCAGCAG___AGTTTTGCCGAATTGACAAGCCCCTGTGTCACAGTGAGGATGAGAAACTCAGCTTCGAGGCAGTCCGTAACATCCACAAACTGATGGACGATGATGCCAATGGTGATGTGGATGTGGAAGAAAGTGATGAG|GAAAAAGGTCTCCTCCTTAGACTACCTGGCGTCCATCCCTACAGTGACAGCACACACTTCTGAACCTGGCTATCTTTTCTCCTGATCTCTCAACTCTGAAAGGGACCAAAGACAGACAGGAGCACAGGTGTGTATGTGTGGTGTGCTCTTCTGTGTGCACCTGAGCAAGAACATGTGTCTTTTGGAATCTGAATTCCTGGGTGATTAGTTAAGCA QSLSHSHSEKATGTSSGANSEESTAAEFCRIDKPLCHSEDEKLSFEAVRNIHKLMDDDANGDVDVEESDE|ekglllrlpgvhpysdsthf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4687 chr11:3856062-3856141:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6615 FCHO2::ETFA ENSG00000157107.14::ENSG00000140374.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FCHO2 ENSG00000157107.14 protein_coding + + chr5:72956041-73090522:+ chr5:73017308:+ chr5:72251868-72386349:+ chr5:72313135:+ ETFA ENSG00000140374.17 protein_coding - + chr15:76188555-76311730:- chr15:76252922:+ chr15:76480896-76604071:- chr15:76545263:+ chr5:73018137,chr5:73018138 chr15:76251444,chr15:76251442 NA NA chr5:72313964,chr5:72313965 chr15:76543785,chr15:76543783 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)| FCH(100%)| 6 4 37 140 33 ENST00000430046.7 unknown downstream upstream duplicates(2),mismappers(2),mismatches(2) GCAAAAGCTGATTTCGAACAGAAAATGACAGAAACAGCTCAG___AAATTTCAAGATATTGAAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAATGCTATAAAGGAAATTCATTTGCAGATAGGCCAG___GTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGTTGAAAGTTTGATACAAAAATTTGCTGAGTCAAAAGGCACTGGGAAGGAAAGACCTG|AGATGGGGTCTTGCTGCATTATGCAAGCTGGAGTGCAGTGGCTGTTGATAGGTATGATCATAGTGTACTACAGTCTCTAACTGCTGGCCTCAAGCAATCCTCCCACCTCAGTCTCCTGAATAGCCGGGACTACAGACGTACACCACGGTGCTCAGCTGTACTGCTTTTAATTTTCAACTTTTCGTAAGTCTGAAATCATTTCAAAATAAAAAATAAAGAGGAGAAGAAGTCTTTGTTAC?ATAGTAAGCTATGAACTG AKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTTVESLIQKFAESKGTGKERP|emgsccimqagvqwlligmiivyysl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6616 AGFG1::COL4A3 ENSG00000173744.18::ENSG00000169031.21 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 631 TRUE 1143 TRUE 429 AGFG1 ENSG00000173744.18 protein_coding + + chr2:227472152-227561217:+ chr2:227472588:+ chr2:228336868-228425933:+ chr2:228337304:+ COL4A3 ENSG00000169031.21 protein_coding + + chr2:227164624-227314792:+ chr2:227269910:+ chr2:228029340-228179508:+ chr2:228134626:+ chr2:227477831,chr2:227477830 chr2:227267881,chr2:227267877 NA NA chr2:228342547,chr2:228342546 chr2:228132597,chr2:228132593 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Putative_GTPase_activating_protein_for_Arf(36%)|C-terminal_tandem_repeated_domain_in_type_4_procollagen(100%),Collagen_triple_helix_repeat_(20_copies)(67%) ArfGap(0%)|C4(100%),Collagen(70%) 11 12 15 276 55 ENST00000310078.13 ENST00000396578.8 downstream upstream mismatches(2) GGCCAGCGCGAAGCGGAAGCAGGAGGAGAAGCACCTGAAGATGCTGCGGGACATGACCGGCCTCCCGCACAACCGAAAGTGCTTCGACTGCGACCAGCGCGGCCCCACCTACGTTAACATGACGGTCGGCTCCTTCGTGTGTACCTCCTGCTCCGGCAGCCT|GAAGACAAGGCGCAGCTGGCTTGAAAGGAAGCCCAGGGTCCCCAGGAAATACAGGTCTTCCAGGATTTCCA___GGTTTCCCAGGTGCCCAGGGTGACCCAGGACTTAAAGGAGAAAAAGGTGAAACACTTCAGCCTGAGGGGCAAGTGGGTGTCCCAGGTGACCCGGGGCTCAGAGGCCAACCTGGGAGAAAGGG ASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSl|ktrrswlerkprvprkyrssrisrfprcpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6617 AGFG1::COL4A3 ENSG00000173744.18::ENSG00000169031.21 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1143 TRUE 429 AGFG1 ENSG00000173744.18 protein_coding + + chr2:227472152-227561217:+ chr2:227472588:+ chr2:228336868-228425933:+ chr2:228337304:+ COL4A3 ENSG00000169031.21 protein_coding + + chr2:227164624-227314792:+ chr2:227272949:+ chr2:228029340-228179508:+ chr2:228137665:+ chr2:227477831,chr2:227477830 chr2:227267881,chr2:227267877 NA NA chr2:228342547,chr2:228342546 chr2:228132597,chr2:228132593 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Putative_GTPase_activating_protein_for_Arf(36%)|C-terminal_tandem_repeated_domain_in_type_4_procollagen(100%),Collagen_triple_helix_repeat_(20_copies)(63%) ArfGap(0%)|C4(100%),Collagen(69%) 0 2 1 276 147 ENST00000310078.13 ENST00000396578.8 downstream upstream none CCCGCACAACCGAAAGTGCTTCGACTGCGACCAGCGCGGCCCCACCTACGTTAACATGACGGTCGGCTCCTTCGTGTGTACCTCCTGCTCCGGCAGCCT|GCTCTGAGTGGTGAGAAAGGGGACCAAGGTCCTCCAGGGGATCCTGGCTCCCCTGGGTCCCCAGGACCTGCAGGACCAGCTGGACCACCTGGCTACGG...CCCCCGGACCACCCGGAGAAGCCG___GCCCTAGGGGAGAGCTCAGcGTTTCAACACCAGTTCCAGGCCCACCAGGACCTCCAGGGCCCCCTGGCCATCCTGGC...AAAATGGGAGAGCCTGGGTTACCTGGAAAGCCAGGCCTCCCAGGAGCCAAG___GGAGAACCAGCAGTAGCCATGCCTGGAGGACCAGGAACACCAGGTTTTCC PHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSl|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6618 SCYL2::ANKS1B ENSG00000136021.19::ENSG00000185046.21 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCYL2 ENSG00000136021.19 protein_coding + + chr12:100267140-100341715:+ chr12:100283147:+ chr12:100660918-100735493:+ chr12:100676925:+ ANKS1B ENSG00000185046.21 protein_coding - + chr12:98726457-99984936:- chr12:99730982:+ chr12:99120235-100378714:- chr12:100124760:+ chr12:100286192,chr12:100286192 chr12:99722585,chr12:99722583 NA NA chr12:100679970,chr12:100679970 chr12:100116363,chr12:100116361 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 3 4 25 174 12 ENST00000635101.1 unknown downstream upstream duplicates(2),mismappers(1),mismatches(2) GCAGGAACAGCCAGGAGGCGTTTATTAGGGGGGCGGGGGGAAAGAGCCCCAGCACCGCCCCTCCTGGAAGAAGGAAGAG___GTAACTATAACTACCCAATATTGCAGCCATGGAGTCCATGCTTAATAAATTGAAGAGTACTGTTACAAAAGTAACAGCTGATGTCACTAGTGCTGTAATGGGAAATCCTGTCACTAGAGAATTTGATGTTGGTCGACACATTGCCAGTGGTGGCAATGGGCTAGCTTGGAAGATTTTTAATGGCACAAAAAAGTCAACAAAGCAG|GCTGGAGTGCAATGTTGTTATCTCCGCTCACTGCAACCTCCgCCTCCCAGGCTCAAGTGATTCTCCTGCCTCAGCCTCCCTCCCAAATAGCTGGGATTACAGGAATGCACCACCACACCTGGCTAATTTTGTTTTATGTTTATTTGTTTGTTTTTGAGAAAATGTCTCACTCTGTCACCCAGACTGGAGTGCAG...TAGCTGGGATTAGAAGCGCACGCCACCACACCCAGATAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCAGGCTTGTCTCAAACTCCTG MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQ|agvqccylrslqpppprlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE SCY1-like protein 2 Other SCY1 Q6P3W7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6619 PSKH1::CTCF ENSG00000159792.10::ENSG00000102974.16 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSKH1 ENSG00000159792.10 protein_coding + + chr16:67893254-67929676:+ chr16:67909706:+ chr16:67927157-67963579:+ chr16:67943609:+ CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67571148:+ chr16:67596370-67673080:+ chr16:67605051:+ chr16:67911942,chr16:67911942 chr16:67567465,chr16:67567462 NA NA chr16:67945845,chr16:67945845 chr16:67601368,chr16:67601365 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Protein_kinase_domain(86%)|C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(100%) PK_Tyr_Ser-Thr(100%),Pkinase(3%)|zf-C2H2(100%),zf-C2H2_6(100%),zf-H2C2_5(100%),zf-met(100%) 13 6 8 163 246 ENST00000291041.6 ENST00000264010.10 downstream upstream mismatches(1) CCTGGCCAGTGCTCGCAAGAAGGGTGATGACTGCTTGATGAAGACCACCTGTGGCACGCCTGAGTACATTGCCCCAGAAGTCCTGGTCCGCAAGCCATACACCAACTCAGTGGACATGTGGGCGCTGGGCGTCATTGCCTACATCCTACTCAGTGGCACCATGCCGTTTGAGGATGACAACCGTACCCGGCTGTACCGGCAGATCCTCAGGGGCAAGTACAGTTACTCTGGGGAG|AATGATTACGGACCTGAAGCCAAAGAACAAGATGCGCTAGTGGACAGATTGCTGACCAGGGGCTTGAGAGCTGGGTTCTATTTTCCCTCCTCAAACTGACTTTGCAGCCACGGAGAG___GCAGGGGAAATGGAAGGTGATGCAGTCGAAGCCATTGTGGAGGAGTCCGAAACTTTTATTAAAGGAAAG LASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTNSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGE|ndygpeakeqdalvdrlltrglragfyfpssn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase H1 CAMK PSK P11801 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense 6620 NECAP2::ERC2 ENSG00000157191.20::ENSG00000187672.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 632 TRUE 1144 TRUE 430 NECAP2 ENSG00000157191.20 protein_coding + + chr1:16440721-16460078:+ chr1:16449201:+ chr1:16767216-16786573:+ chr1:16775696:+ ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:55734918:- chr3:55542339-56503123:- chr3:55768946:- chr1:16451651,chr1:16451652 chr3:55797708,chr3:55797707 NA NA chr1:16778146,chr1:16778147 chr3:55831736,chr3:55831735 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_of_unknown_function_(DUF1681)(100%)|RIM-binding_protein_of_the_cytomatrix_active_zone(7%) DUF1681(100%)|Cast(4%) 8 9 8 414 48 ENST00000337132.10 ENST00000492584.3 downstream downstream mismatches(6) TTCGTGATCCGCATCGAAGATGGAAATG___GGCGACGGGCGTTTATTGGAATTGGCTTCGGGGACCGAGGTGATGCCTTTGACTTCAATGTTGCATTGCAGGACCATTTCAA___GTGGGTGAAACAGCAGTGTGAATTTGCAAAACAAGCCCAGAACCCAGACCAAGGCCCTAAACTGGACCTGGGCTTCAAGGAGGGCCAGACCATCAAGCTCAACATCGCA|ACAGGAAGCACTACTTGCAGCCATCAGTGAAAAAGATGCAAACATTGCCTTGCTGGAATTGTCTGCCTCCAAAAAGAAAAAGACGCAGGAAGAAGTCATGGCCCTCAAGCGGGAAAAAGACCGACTAGTACATCAATTAAAGCAGCAGGTGGGGCCTCCTGCA FVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIA|tgsttcshq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6621 NECAP2::ERC2 ENSG00000157191.20::ENSG00000187672.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1144 TRUE 430 NECAP2 ENSG00000157191.20 protein_coding + + chr1:16440721-16460078:+ chr1:16449201:+ chr1:16767216-16786573:+ chr1:16775696:+ ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:55734914:- chr3:55542339-56503123:- chr3:55768942:- chr1:16451651,chr1:16451652 chr3:55797708,chr3:55797707 NA NA chr1:16778146,chr1:16778147 chr3:55831736,chr3:55831735 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_of_unknown_function_(DUF1681)(100%)|RIM-binding_protein_of_the_cytomatrix_active_zone(7%) DUF1681(100%)|Cast(4%) 3 4 8 414 48 ENST00000337132.10 ENST00000487287.1 downstream downstream mismatches(2) ACGGGCGTTTATTGGAATTGGCTTCGGGGACCGAGGTGATGCCTTTGACTTCAATGTTGCATTGCAGGACCATTTCAA___GTGGGTGAAACAGCAGTGTGAATTTGCAAAACAAGCCCAGAACCCAGACCAAGGCCCTAAACTGGACCTGGGCTTCAAGGAGGGCCAGACCATCAAGCTCAACATCGCA|GAAGCACTACTTGCAGCCATCAGTGAAAAAGATGCAAACATTGCCTTGCTGGAATTGTCTGCCTCCAAAAAGAAAAAGACGCAGGAAGAAGTCATGGCCCTCAAGCGGGAAAAAGACCGACTAGTACATCAATTAAAGCAGC RAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIA|eallaaisekdaniallelsaskkkktqeevmalkrekdrlvhqlkq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6622 NECAP2::ERC2 ENSG00000157191.20::ENSG00000187672.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1144 TRUE 430 NECAP2 ENSG00000157191.20 protein_coding + + chr1:16440721-16460078:+ chr1:16450241:+ chr1:16767216-16786573:+ chr1:16776736:+ ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:55734918:- chr3:55542339-56503123:- chr3:55768946:- chr1:16451651,chr1:16451652 chr3:55797708,chr3:55797707 NA NA chr1:16778146,chr1:16778147 chr3:55831736,chr3:55831735 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site translocation low none Protein_of_unknown_function_(DUF1681)(100%)|RIM-binding_protein_of_the_cytomatrix_active_zone(7%) DUF1681(100%)|Cast(4%) 0 0 0 7 48 ENST00000459640.5 ENST00000492584.3 downstream downstream mismatches(1) TGtAAGTCCAATCCAGTGGACTGGTTGGGATGTGATTCTTTCTCTCGCTTGGAGGAAACTAACATTTAATGAGCATCAGCTGAGGGCCAG|ACAGGAAGCACTACTTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6623 ZNF532::LINC01926 ENSG00000074657.14::ENSG00000267593.2 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 633 TRUE 1145 TRUE 431 ZNF532 ENSG00000074657.14 protein_coding + + chr18:58862600-58986480:+ chr18:58865579:+ chr18:56529832-56653712:+ chr18:56532811:+ LINC01926 ENSG00000267593.2 lncRNA + + chr18:58808468-58834364:+ chr18:58813888:+ chr18:56475700-56501596:+ chr18:56481120:+ chr18:58914429,chr18:58914430 chr18:58812557,chr18:58812555 NA NA chr18:56581661,chr18:56581662 chr18:56479789,chr18:56479787 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 5 9 11 87 36 ENST00000588601.5 ENST00000659493.1 downstream upstream low_entropy(1),mismatches(4) GCCAACCCCGGGAAGGGG___GCCTGTTGACTGGGGCTGCTTTTAACCCTTTCCTATTTGCTGAGAATGCAGCCGTGTGACAGTAACTGAACATTGGTCTAAAGTCTTTCCAAAAGGTCAAGGTTCACAAG|TCCCAAGAATAACACAAGAAATTCTCCAAGTTTCCAAGAAGGGAAGATGGAGTGGAGGGCGCCCACCCTATCTCCAGTGGACATCCCCTGGGCTACTCCTCTCCTGATGAGAAAATGCTCACTTCAGCCAAGTGCAGAATGGTCCCCTTTGTTTTCGTGGGTATCAGTGGAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6624 ZNF532::LINC01926 ENSG00000074657.14::ENSG00000267593.2 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1145 TRUE 431 ZNF532 ENSG00000074657.14 protein_coding + + chr18:58862600-58986480:+ chr18:58896622:+ chr18:56529832-56653712:+ chr18:56563854:+ LINC01926 ENSG00000267593.2 lncRNA + + chr18:58808468-58834364:+ chr18:58813888:+ chr18:56475700-56501596:+ chr18:56481120:+ chr18:58914429,chr18:58914430 chr18:58812557,chr18:58812555 NA NA chr18:56581661,chr18:56581662 chr18:56479789,chr18:56479787 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 0 2 11 7 36 ENST00000587755.1 ENST00000659493.1 downstream upstream none CACCCATCCGTCTGTCCATCCGCCCACTCAGCTATCTGTTTATCAAG|TCCCAAGAATAACACAAGAAATTCTCCAAGTTTCCAAGAAGGGAAGATGGAGTGGAGGGCGCCCACCCTATCTCCAGTGGACATCCCCTGGGCTACTCCTCTCCTGATGAGAAAATGCTCACTTCAGCCAAGTGCAGAATGGTCCCCTTTGTTTTCGTGGGTATCAGTGGAGAATGAGATCCTTCATGTAAGTAAAATTTCACTGTCACTCATTAGGATGGCT THPSVHPPTQLSVYQ|vpritqeilqvskkgrwsggrppylqwtspgllls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6625 ZNF532::LINC01926 ENSG00000074657.14::ENSG00000267593.2 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1145 TRUE 431 ZNF532 ENSG00000074657.14 protein_coding + + chr18:58862600-58986480:+ chr18:58863686:+ chr18:56529832-56653712:+ chr18:56530918:+ LINC01926 ENSG00000267593.2 lncRNA + + chr18:58808468-58834364:+ chr18:58813888:+ chr18:56475700-56501596:+ chr18:56481120:+ chr18:58914429,chr18:58914430 chr18:58812557,chr18:58812555 NA NA chr18:56581661,chr18:56581662 chr18:56479789,chr18:56479787 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 0 1 32 36 ENST00000588601.5 ENST00000659493.1 downstream upstream none CGCTCCACCGCACACGCACACACAGACCCCGGCAGCGGGAACGCAGATGACACGCCCGTAACATGGAAGCCGCCGCCGCCGCCGCTCCGACGACAGCAGCAGCAGCCACAGCAGCAGCCGCCGGCGGCGCCGCGCTGAACAAAG|TCCCAAGAATAACACAAGAAATTCTCCAAGTTTCCAAGAAGGGAAGATGGAGTGGAGGGCGCCCACCCTATCTCCAGTGGACATCCCCTGGGCTACTCCTCTCCTGATGAGAAAATGCTCACTTCAGCCAAGTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6626 CENPX::NTN4 ENSG00000169689.15::ENSG00000074527.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 634 TRUE 1146 TRUE 432 CENPX ENSG00000169689.15 protein_coding - - chr17:82018702-82024107:- chr17:82022639:- chr17:79976578-79981983:- chr17:79980515:- NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95710629:- chr12:96051583-96184967:- chr12:96104407:- chr17:82020274,chr17:82020284 chr12:95711516,chr12:95711516 NA NA chr17:79978150,chr17:79978160 chr12:96105294,chr12:96105294 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none CENP-S_associating_Centromere_protein_X(1%)|Laminin_EGF_domain(64%),UNC-6/NTR/C345C_module(100%) CENP-X(5%)|Laminin_EGF(1%),NTR(100%) 8 7 7 24 1109 ENST00000580090.5 ENST00000343702.9 upstream downstream duplicates(1),mismatches(2) GCAGGAGCTGGATCCGGCTTCCGGAAGGTGAGGGCCGGAGGGCAGGGGCTAGGCAGGCGCGGACGCTCCGTCCCGACCTCACGCGTGACACTGTGAGGGCCAGACGCCAGCCCCCGCGCCGCCCCCTGTGCCTTTGAGGTTGGGCCCGTTCTCAGACTCCATCTCCGGCCGGGCCGCGCGCCCCGCGCCCTCGTGGGCTGGTGTCTCGCAGCTG|CCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGCAAAC___CGTGTTCCTGCC...TAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCaGGGAGCTGTGACCCTATCACCGGAGACTGCATCAGCAG___CCACACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6627 CENPX::NTN4 ENSG00000169689.15::ENSG00000074527.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 635 TRUE 1146 TRUE 432 CENPX ENSG00000169689.15 protein_coding - - chr17:82018702-82024107:- chr17:82022826:- chr17:79976578-79981983:- chr17:79980702:- NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95710629:- chr12:96051583-96184967:- chr12:96104407:- chr17:82020274,chr17:82020284 chr12:95711516,chr12:95711516 NA NA chr17:79978150,chr17:79978160 chr12:96105294,chr12:96105294 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none CENP-S_associating_Centromere_protein_X(1%)|Laminin_EGF_domain(64%),UNC-6/NTR/C345C_module(100%) CENP-X(0%)|Laminin_EGF(1%),NTR(100%) 0 29 0 203 1109 ENST00000306704.10 ENST00000343702.9 upstream downstream none GTTGAGGCTGCGGTCATGGAGGGAGCAGGAGCTGGATCCGGCTTCCGGAAG|CCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGA MEGAGAGSGFRK|pasvmgmlipvtstlmcgrhqgivvvvsvmtvsttqkdsiargasqasiv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6628 CHEK2::TTC28 ENSG00000183765.24::ENSG00000100154.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1147 TRUE 433 CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28710006:- chr22:29083731-29138410:- chr22:29105994:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28640813:- chr22:28374002-29075828:- chr22:29036801:- chr22:28705656,chr22:28705658 chr22:28642434,chr22:28642433 NA NA chr22:29101644,chr22:29101646 chr22:29038422,chr22:29038421 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none FHA_domain(100%),Protein_kinase_domain(23%)|CHAT_domain(100%),Tetratricopeptide_repeat(100%) FHA(100%),HscB_4_cys(100%),PK_Tyr_Ser-Thr(37%),Pkinase(48%)|ANAPC5(100%),CHAT(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 8 2 11 56 20 ENST00000348295.7 unknown upstream downstream mismappers(2),mismatches(2) CTGAAATTGCACTGTCACTAAGCAGAAATAAAG___TTTTTGTCTTTTTTGATCTGACTGTAGATGATCAGTCAGTTTATCCTAAGGCATTAAGAGATGAATACATCATGTCAAAAACTCTTGGAAG___TGGTGCCTGTGGAGAGGTAAAGCTGGCTTTCGAGAGGAAAACATGTAAGAAAGTAGCCATAAAGATCATCAGCAAAAGGAAGTTTGCTATTGGTTCAGCAAGAGAGGCA___GACCCAGCTCTCAATGTTGAAACAGAAATAGAAATTTTGAAAAAGCTAAATCAT|GACCTGCCGTACTATTTCCACAGTGGTTGTACCATTTTATATTCCCATGAGTAATGTATGAATATTCCTATTTCATTCTCAGTTTTGAAGAGTATTTTCTCTGAGTATTTTATGTTAGGTGCTATTTCAGCTTCCGTCATTTCTGTTGAGTATGCAGCTTGTAGCTCCTTTCAAGGTAATGTGTCTTATTTCCCTCTGTCTGCTTTAACATTTTCTCTGTTTATTATTATTATTATTATTATTA[ttattattt]TTTTAACAGTTTGACTATGACAGACGTAGGTGTGATTTTCT EIALSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNH|dlpyyfhsgctilyshe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 6629 CHEK2::TTC28 ENSG00000183765.24::ENSG00000100154.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1147 TRUE 433 CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28710006:- chr22:29083731-29138410:- chr22:29105994:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28629830:- chr22:28374002-29075828:- chr22:29025818:- chr22:28705656,chr22:28705658 chr22:28642434,chr22:28642433 NA NA chr22:29101644,chr22:29101646 chr22:29038422,chr22:29038421 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none FHA_domain(100%),Protein_kinase_domain(23%)|CHAT_domain(100%),Tetratricopeptide_repeat(100%) FHA(100%),HscB_4_cys(100%),PK_Tyr_Ser-Thr(37%),Pkinase(48%)|ANAPC5(100%),CHAT(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 2 1 1 56 12 ENST00000348295.7 ENST00000397906.7 upstream downstream mismatches(1) AGGGAAAGGAAAACGCCGTCCTTTGAATAACAATTCTGAAATTGCACTGTCACTAAGCAGAAATAAAG___TTTTTGTCTTTTTTGATCTGACTGTAGATGATCAGTCAGTTTATCCTAAGGCATTAAGAGATGAATACATCATGTCAAAAACTCTTGGAA...ATCAGCAAAAGGAAGTTTGCTATTGGTTCAGCAAGAGAGGCA___GACCCAGCTCTCAATGTTGAAACAGAAATAGAAATTTTGAAAAAGCTAAATCAT|ATTCCTCTCTTTGGTGCTGACACTATTGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGATTTCCACACAGC...ACTGCATCTTATACAGCAATAGATCTGCAGCCTACATGAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAG ISKRKFAIGSAREADPALNVETEIEILKKLNH|IPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDFHT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 6630 TBC1D22A::GRAMD4 ENSG00000054611.14::ENSG00000075240.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 636 TRUE 1148 TRUE 434 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46797620:+ chr22:47158514-47571342:+ chr22:47193517:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46676600:+ chr22:46971909-47075687:+ chr22:47072497:+ chr22:46848901,chr22:46848905,chr22:46848902 chr22:46674725,chr22:46674728,chr22:46674723 NA NA chr22:47244798,chr22:47244802,chr22:47244799 chr22:47070622,chr22:47070625,chr22:47070620 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |GRAM_domain(38%) |GRAM(17%) 3 1 11 126 131 ENST00000380995.5 ENST00000406902.6 downstream upstream mismappers(1),multimappers(1) ACACGTCCTGTCCTGCAG___AAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTCCCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGCTGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTG|TACAAGGTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATTGCCGTGTCGACGCCATCCACCCAGAAA___CCGCTCGTGTTTGGTGCCATGGTGCACAGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAG TSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDL|vqgpvcpprlrhgdcrvdaihpetarvwchgaqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER no_match 47193517,47308084 TRUE,FALSE 47022648,47022648 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6631 TBC1D22A::GRAMD4 ENSG00000054611.14::ENSG00000075240.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 637 TRUE 1148 TRUE 434 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46797620:+ chr22:47158514-47571342:+ chr22:47193517:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46677147:+ chr22:46971909-47075687:+ chr22:47073044:+ chr22:46848901,chr22:46848905,chr22:46848902 chr22:46674725,chr22:46674728,chr22:46674723 NA NA chr22:47244798,chr22:47244802,chr22:47244799 chr22:47070622,chr22:47070625,chr22:47070620 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |GRAM_domain(19%) |GRAM(2%) 2 2 9 126 148 ENST00000380995.5 ENST00000406902.6 downstream upstream multimappers(1) GCCATGGCCAGCGACGGGGCCAGGAAGCAATTCTGGAAGCGCAGCAACAGCAAGCTCCCGGGCAG___CATCCAGCACGTGcATGGTGgCCcGCACCCCCCC...CCCAGCGGCGACCTCCGGCTGGTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCAG___AAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTCCCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGCTGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTG|CCGCTCGTGTTTGGTGCCATGGTGCACAGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAGCGGCAGCGTCTGGCGGGGACAGCTAGTATTGACTTGCCCAGGACGTTGCTGGAATTTTCTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTACGATTTGGTAGTGGAAACAATTGGACATCCTCATGAGCTTTTGCAATAATTCTCCTGGACCTGTGGTTCTATTGTGTTGACCTCTGCGTTTTATCGACCAAGAAGGGGCCAGGGCTCACAGGGACGGGGGTGCCCCTCTCCCACAGGGCACGTCAGGTGCCTCTGAGGGCCACCCGCAGACTGGGGGAGGGGGC PSGDLRLVKSVSESHTSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDL|aarvwchgaqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER no_match 47193517,47308084 TRUE,FALSE 47022648,47022648 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6632 TBC1D22A::GRAMD4 ENSG00000054611.14::ENSG00000075240.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1148 TRUE 434 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46797620:+ chr22:47158514-47571342:+ chr22:47193517:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46675468:+ chr22:46971909-47075687:+ chr22:47071365:+ chr22:46848901,chr22:46848905,chr22:46848902 chr22:46674725,chr22:46674728,chr22:46674723 NA NA chr22:47244798,chr22:47244802,chr22:47244799 chr22:47070622,chr22:47070625,chr22:47070620 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |GRAM_domain(61%) |GRAM(50%) 0 1 11 126 165 ENST00000380995.5 ENST00000406902.6 downstream upstream multimappers(1) CCCAGCGGCGACCTCCGGCTGGTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCAG___AAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTCCCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGCTGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTG|TTACTTGTGCTTCGAAAGCTCCAAATCTGGGTCCTCAAAGAGGAACAAAGT...ATCAAGCTAGTGGACATCACGGACATCCAGAAG___CCGCTCGTGTTTGGTGCCATGGTGCACAGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCA PSGDLRLVKSVSESHTSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDL|vtcaskapnlgpqrgtk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER no_match 47193517,47308084 TRUE,FALSE 47022648,47022648 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6633 MTFMT::RASL12 ENSG00000103707.10::ENSG00000103710.11 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 638 TRUE 1149 TRUE 435 MTFMT ENSG00000103707.10 protein_coding - - chr15:65001512-65029639:- chr15:65021514:- chr15:65293850-65321977:- chr15:65313852:- RASL12 ENSG00000103710.11 protein_coding - - chr15:65053337-65076690:- chr15:65065273:- chr15:65345675-65369028:- chr15:65357611:- chr15:65020403,chr15:65020412,chr15:65020416 chr15:65068839,chr15:65068846,chr15:65068848 NA NA chr15:65312741,chr15:65312750,chr15:65312754 chr15:65361177,chr15:65361184,chr15:65361186 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Formyl_transferase(95%)|Ras_family(92%) Formyl_trans_N(81%)|Arf(79%),Ras(47%),Roc(73%) 9 4 2 246 52 ENST00000220058.9 ENST00000434605.2 upstream downstream duplicates(1),low_entropy(1),mismatches(1) GTGGTCACAATGCCTTCCCCATCACCAAAAGGACTGCCAGTGAAGCAATATGCTGTGCAGTCTCAGCTTCCCGTATATGAGTGGCCGGATGTGGGATCTGGAGAATATGATGTTGGAGTAGTGGCTTCGTTTGGCCGACTTTTGAATGAGGCTCTTATTCTTAAATTTCCCTA___...GCGTGGCCCAGCCCCTGTAATCCA...CAATTATGCAAATTAGACCTAAAAG___GTTTGATGTAGGCCCAATTCTCAAACAAGAAACTGTTCCTGTGCCACCCAAGAGCACTGCAAAGGAATTGGAAGCAGTGTTGTCAAGACTGGGTGCCAACATG|CCCTGACCGTGAAGTTTCTGACCAAGAGGTTTATCAGTGAATATGACCCCAACTTGG___AGGACACCTACAGCTCCGAGGAGACTGTGGACCACCAGCCTGTCCACCTGAGGGTCATGGACACTGCAGACCTG___GACA IMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANM|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6634 MTFMT::RASL12 ENSG00000103707.10::ENSG00000103710.11 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1149 TRUE 435 MTFMT ENSG00000103707.10 protein_coding - - chr15:65001512-65029639:- chr15:65021514:- chr15:65293850-65321977:- chr15:65313852:- RASL12 ENSG00000103710.11 protein_coding - - chr15:65053337-65076690:- chr15:65058617:- chr15:65345675-65369028:- chr15:65350955:- chr15:65020403,chr15:65020412,chr15:65020416 chr15:65068839,chr15:65068846,chr15:65068848 NA NA chr15:65312741,chr15:65312750,chr15:65312754 chr15:65361177,chr15:65361184,chr15:65361186 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none Formyl_transferase(95%)|Ras_family(65%) Formyl_trans_N(81%)|Arf(26%),Ras(16%),Roc(1%) 1 0 2 246 59 ENST00000561025.1 ENST00000434605.2 upstream downstream none AGAATATGATGTTGGAGTAGTGGCTTCGTTTGGCCGACTTTTGAATGAGGCTCTTATTCTTAAATTTCCCTA___GTTTGATGTAGGCCCAATTCTCAAACAAGAAACTGTTCCTGTGCCACCCAAGAGCACTGCAAAGGAATTGGAAGCAGTGTTGTCAAGACTGGGTGCCAACATG|GACACCCCCAGGAACTGCGAGCGCTACCTGAACTGGGCCCATGCCTTCCTGGTGGTGTACAGCGTCG...GCTGCTTGCCTTGCACGCGAAGGAGACACAGCGCAGCATCCCTGCCCTGCTGCTGGGCAACAAGCTGGACATGGCTCAGTACAG___GCAAGTCACCAAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6635 ZNF888::ZNF160 ENSG00000213793.6::ENSG00000170949.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1150 TRUE 436 ZNF888 ENSG00000213793.6 protein_coding - - chr19:52904415-52923470:- chr19:52917859:- chr19:53407668-53426723:- chr19:53421112:- ZNF160 ENSG00000170949.18 protein_coding - - chr19:53066606-53103434:- chr19:53075183:- chr19:53569859-53606687:- chr19:53578436:- chr19:52916038,chr19:52916045 chr19:53076875,chr19:53076879 NA NA chr19:53419291,chr19:53419298 chr19:53580128,chr19:53580132 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 3 4 7 156 131 ENST00000638862.2 ENST00000418871.5 upstream downstream mismappers(6),mismatches(1) GTAGATTCGCCCGGACCAGGAAGCGGATCGCGTGGACTGGAAGTCACACTGCGGCG___ACTCTGGGTATGTGAAGAAGAAACTCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAG|GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG___GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACCA MALPQ|VRLTFRDVAIEFSQEEWKCLDPAQRILYRDVMLENYWNLVSLGLCHFDMNIISMLEEGKEPWTVKSCVKIARK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6636 ZNF888::ZNF160 ENSG00000213793.6::ENSG00000170949.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1150 TRUE 436 ZNF888 ENSG00000213793.6 protein_coding - - chr19:52904415-52923470:- chr19:52917222:- chr19:53407668-53426723:- chr19:53420475:- ZNF160 ENSG00000170949.18 protein_coding - - chr19:53066606-53103434:- chr19:53075183:- chr19:53569859-53606687:- chr19:53578436:- chr19:52916038,chr19:52916045 chr19:53076875,chr19:53076879 NA NA chr19:53419291,chr19:53419298 chr19:53580128,chr19:53580132 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 0 1 11 18 131 ENST00000596623.2 ENST00000418871.5 upstream downstream duplicates(1),mismappers(3),mismatches(1) CACACTGCGGCG___ACTCTGGGTATGTGAAGAAGAAACTCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAG___GTA...CTGAGATTGCACCATTGCACTCCAGCCCAG|GTACGGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGATCTTATACAGGGACGTGATGTTGGAGAACTACTGGAACCTTGTTTCTCTGG___GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6637 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 639 TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767395:- chr19:12873817-12983554:- chr19:12878209:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551053:+ chr11:66313866-66330805:+ chr11:66318524:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none HOOK_domain(100%),HOOK_protein_coiled-coil_region(53%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(96%),Spectrin_repeat(100%) 1-cysPrx_C(100%),AhpC-TSA(100%),DUF1908(100%),Folate_rec(100%),HOOK(50%),HOOK_N(100%),Jun(100%),PDZ(100%),PDZ_6(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RNase_HII(100%),Redoxin(100%),TSP_1(100%),bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|CAMSAP_CH(100%),CH(65%),EFhand_Ca_insen(100%),Spectrin(100%) 2 3 8 161 12 ENST00000264827.9 ENST00000511191.1 upstream upstream none GGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGAAAAGTATGAGTCGGTGACAAAGGAGAAGGAG___...CTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCG___ATCCCTCACTGGATCCCACCTCCACACCCGTGGATAACTTAGCCGCAGAGATCCTGCCTGCGGAGCTCAG|GAAAACGAAAGCTCAGAGAGGGAAAGGGACTGGCCCAGGATGCACAGCAAGTCAGTGGCTGAGC?GAGCTGAG...AAATACAAGGCTCTGAGACCTACCCTGACTGAGGAGACAGGACTGTGCCCTACATCCCCCAGAGCCAGTCGTAGGGTTTGAGTGCTGTCCTCTGCCCCTAGACCTTCACTGCCTGGTGCAACTCACACCTGCGCAAGGCAGGCACCCAGATCGAGAACATCGAGGAAGATTTCCGCAATGGCCTCAAACTCATGCTGCTCCTGGAGGTCATTTCAG LRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELr|ktkaqrgkgtgpgctasqwls?a NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6638 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 640 TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767395:- chr19:12873817-12983554:- chr19:12878209:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551239:+ chr11:66313866-66330805:+ chr11:66318710:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none HOOK_domain(100%),HOOK_protein_coiled-coil_region(53%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(96%),Spectrin_repeat(100%) 1-cysPrx_C(100%),AhpC-TSA(100%),DUF1908(100%),Folate_rec(100%),HOOK(50%),HOOK_N(100%),Jun(100%),PDZ(100%),PDZ_6(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RNase_HII(100%),Redoxin(100%),TSP_1(100%),bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|CAMSAP_CH(100%),CH(63%),EFhand_Ca_insen(100%),Spectrin(100%) 2 4 7 161 25 ENST00000264827.9 ENST00000502692.5 upstream upstream mismatches(1) CGCGCCCAGCTGGAGGCGCAGCGGCGGCAG___GTGCAGGgACTGCcGGGCCAGCGGCAGGAGGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGAAAAGTATGAGTCGGTGACAAAGGAGAAGGAG___...CTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCG___ATCCCTCACTGGATCCCACCTCCACACCCGTGGATAACTTAGCCGCAGAGATCCTGCCTGCGGAGCTCAG|ACCTTCACTGCCTGGTGCAACTCACACCTGCGCAAGGCAGGCACCCAGATCGAGAACATCGAGGAAGATTTCCGCAATGGCCTCAAACTCATGCTGCTCCTGGAGGTCATTTCAG___GTGAGAGGCTGCCTAGGCCAGATAAAGGCAAGATGCGCTTCCACAAAATCGCCAACGTTAACAAGGCCCTGGACTTCATTGCCAGCAA LRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELr|pslpgathtcarqaprsrtsrkisamasnsccswrsfqvrgclgqikarcastksptltrpwtslpa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6639 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767816:- chr19:12873817-12983554:- chr19:12878630:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551053:+ chr11:66313866-66330805:+ chr11:66318524:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none HOOK_domain(100%),HOOK_protein_coiled-coil_region(48%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(96%),Spectrin_repeat(100%) 1-cysPrx_C(100%),AhpC-TSA(100%),DUF1908(100%),Folate_rec(100%),HOOK(44%),HOOK_N(100%),Jun(100%),PDZ(100%),PDZ_6(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RNase_HII(100%),Redoxin(100%),TSP_1(100%),bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|CAMSAP_CH(100%),CH(65%),EFhand_Ca_insen(100%),Spectrin(100%) 0 2 6 184 12 ENST00000264827.9 ENST00000511191.1 upstream upstream none TGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGAAAAGTATGAGTCGGTGACAAAGGAGAAGGAG___CGGCTGTTGGCGGAGCGGGACTCCTTGCGGGAGGCCAATGAGGAGCTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCG|GAAAACGAAAGCTCAGAGAGGGAAAGGGACTGGCCCAGGATGCACAGCAAGTCAGTGGCTGAGCTGAGCTGAGACTTGAATCCAGAAATACAAGGCTCTGAGAC...GGTTTGAGTGCTGTCCTCTGCCCCTAGACCTTCACTGCCTGGTGCAACTCACACCTGCGCAAGGCAGGCACCCAGATCGAGAACATCGAGGAAGATTTCCGC KAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCAQLQPRGLTQA|gkrklregkglaqdaqqvsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6640 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767816:- chr19:12873817-12983554:- chr19:12878630:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551239:+ chr11:66313866-66330805:+ chr11:66318710:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none HOOK_domain(100%),HOOK_protein_coiled-coil_region(48%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(96%),Spectrin_repeat(100%) 1-cysPrx_C(100%),AhpC-TSA(100%),DUF1908(100%),Folate_rec(100%),HOOK(44%),HOOK_N(100%),Jun(100%),PDZ(100%),PDZ_6(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RNase_HII(100%),Redoxin(100%),TSP_1(100%),bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|CAMSAP_CH(100%),CH(63%),EFhand_Ca_insen(100%),Spectrin(100%) 1 0 5 184 25 ENST00000264827.9 ENST00000502692.5 upstream upstream none GCAGGAGGAGGCCATGAAGGCCGAGAAATGGCTATTTGAATGCCGCAACCTGGAGGAAAAGTATGAGTCGGTGACAAAGGAGAAGGAG___CGGCTGTTGGCGGAGCGGGACTCCTTGCGGGAGGCCAATGAGGAGCTGCGCTGCGCCCAGCTGCAGCCGCGGGGGTTGACCCAGGCCG|ACCTTCACTGCCTGGTGCAACTCACACCTGCGCAAGGCAGGCACCCAGATCGAGA...ATCGAGGAAGATTTCCGCAATGGCCTCAAACTCATGCTGCTCCTGGAGGTCATTTCAG___GTGAGAGGCTGCCTAGGCCAGATAAAGGCAAGATGCGCTTCCACAAAATCGCCAACGTTAACAAGGCCCTGGACTTCATTGCCAGCAA QEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCAQLQPRGLTQA|dlhclvqltpaqgrhpdr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6641 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12768013:- chr19:12873817-12983554:- chr19:12878827:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551053:+ chr11:66313866-66330805:+ chr11:66318524:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none HOOK_domain(100%),HOOK_protein_coiled-coil_region(43%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(96%),Spectrin_repeat(100%) 1-cysPrx_C(100%),AhpC-TSA(100%),DUF1908(100%),Folate_rec(100%),HOOK(42%),HOOK_N(100%),Jun(100%),PDZ(100%),PDZ_6(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RNase_HII(100%),Redoxin(100%),TSP_1(100%),bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|CAMSAP_CH(100%),CH(65%),EFhand_Ca_insen(100%),Spectrin(100%) 0 0 0 202 12 ENST00000264827.9 ENST00000511191.1 upstream upstream low_entropy(1) GGATGAGCTACGCCGAGCGGGCTCCCTGCGCGCCCAGCTGGAGGCGCAGCGGCGGCAG___GTGCAGGAACTGCAGGGCCAGCGGCAGGAGGAGGgCATGAA...ACAAAGGAGAAGGAG|GAAAACGAAAGCTCAGAGAGGGAAAGGGACTGGCCCAGGATGCACAGCAAGTCAGTGGCTGAGCTGAGCTGAGACTTGAATCCAGA TKEKE|ENESSERERDWPRMHSKSVAELS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6642 IL1R1::LINC01127 ENSG00000115594.12::ENSG00000281162.4 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 641 TRUE 1152 TRUE 438 IL1R1 ENSG00000115594.12 protein_coding + + chr2:102064544-102179874:+ chr2:102104872:+ chr2:102681004-102796334:+ chr2:102721332:+ LINC01127 ENSG00000281162.4 lncRNA + + chr2:101962052-101987167:+ chr2:101983692:+ chr2:102578514-102603629:+ chr2:102600154:+ chr2:102141643,chr2:102141641 chr2:101973572,chr2:101973567 NA NA chr2:102758103,chr2:102758101 chr2:102590034,chr2:102590029 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 2 5 6 32 22 ENST00000409589.5 ENST00000627273.3 downstream upstream none CTTTGAGCCTCCGTACCAGCTGGGGCaTCCGGCAAGATGTGAGTTGTCACTCTGCTGCGGCACAGACCTGAATTAACAACTCTAGCTAGGGCTGACTTCAAAAAGCACTTTCGTTTTTTAATAACCAACATCAGCTCAGCAGGCTTCATTTGGGAAAAGAAACCTTGTCGGATTACCCCGACATTCTCCACCTCCTGGGAGGCCAGCCATTCCCAAATtCCCCAAGGATGAAGAACGGAGACG|CTTTGAGAAGCAGATAGGCTTGAATGAGCATGGAATGTATCTATTTAAAAAGCAGCTGGAAGTCTGTCAAGTGCATTCTGGAAATGGATTCAGGCTAACAGAGTGTTCTGAATAGAGACGCCTAAAACAA___GAGCCAAAGACATAGCAATGGAGAACGTGGGTGGTACAGCCCTCCACCCTGGCGAGCAGCACATTAGAATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6643 IL1R1::LINC01127 ENSG00000115594.12::ENSG00000281162.4 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1152 TRUE 438 IL1R1 ENSG00000115594.12 protein_coding + + chr2:102064544-102179874:+ chr2:102070533:+ chr2:102681004-102796334:+ chr2:102686993:+ LINC01127 ENSG00000281162.4 lncRNA + + chr2:101962052-101987167:+ chr2:101983692:+ chr2:102578514-102603629:+ chr2:102600154:+ chr2:102141643,chr2:102141641 chr2:101973572,chr2:101973567 NA NA chr2:102758103,chr2:102758101 chr2:102590034,chr2:102590029 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 2 1 11 22 ENST00000409929.5 ENST00000625702.1 downstream upstream none CCtAGTTTAAGGAAAATTCCAAGGCATTTGTCTCGACTAATGTGAAAGATGATTACAGTGGCCAGAGGACTGCCAAGGCTCCTTCTCAAGCTGCTTGAGTCAATGAGG|CTTTGAGAAGCAGATAGGCTTGAATGAGCATGGAATGTATCTATTTAAAAAGCAGCTGGAAGTCTGTCAAGTGCATTCTGGAAATGGATTCAGGCTAACAGAGTGTTCTGAATAGAGACGCCTAAAACAA___GAGCCAAAGACATAGCAATGGAGAACGTGGGTGGTACAGCCCTCCACCCTGGCGAGCAG...TGTTCACTGCAGGTTGCTaGtTCCCATCTCTAGCCTCTGATCCAGTAGCCTGGGGTGGGGCACAGGATGTCCTGCTGCTGGGGTCTGGGCAGCGCTATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6645 DNAAF9::NBR1 ENSG00000088854.13::ENSG00000188554.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 642 TRUE 1153 TRUE 439 DNAAF9 ENSG00000088854.13 protein_coding - - chr20:3249306-3407669:- chr20:3296861:- chr20:3229952-3388316:- chr20:3277508:- NBR1 ENSG00000188554.15 protein_coding + + chr17:43170481-43211689:+ chr17:43194350:+ chr17:41322498-41363708:+ chr17:41346367:+ chr20:3296317,chr20:3296320 chr17:43193446,chr17:43193443 NA NA chr20:3276964,chr20:3276967 chr17:41345463,chr17:41345460 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 6 2 3 41 310 ENST00000252032.10 ENST00000341165.10 upstream upstream duplicates(1) CTGTGAACCCCTGCAAAG___GATTCCACCAGTACTGTTGCTGCTCTTCTCATAGACTTCAAAAGCTCATTGCTTCCTCACCTCCCAGTTCATTTCCATGGATCAAGCAATTTTCTGATGATTGCCCTTTTCCCCAAATCGAAGATATACCAAGCATTTTACTCAGAG___GTCTTCTCCCTCTGGAAACAGCAGGATAACTCAGGGATCTCTTTAAAAGTGATCCAGGAAGATGGATTATCTGTGGAACAAAAGAGATT|GAAACTTTTCTTCTGGCTAAAGAAGAAAGACAGCTTGGTGAAGTGACTGAGCAGACAGAAGGGACAGCAGCCTGCATCCCACAGAAGGCAAAAAATGTTGCCAGTGAG l*tpakDSTSTVAALLIDFKSSLLPHLPVHFHGSSNFLMIALFPKSKIYQAFYSEVFSLWKQQDNSGISLKVIQEDGLSVEQKRl|klffwlkkkdslvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6646 DNAAF9::NBR1 ENSG00000088854.13::ENSG00000188554.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1153 TRUE 439 DNAAF9 ENSG00000088854.13 protein_coding - - chr20:3249306-3407669:- chr20:3296861:- chr20:3229952-3388316:- chr20:3277508:- NBR1 ENSG00000188554.15 protein_coding + + chr17:43170481-43211689:+ chr17:43194964:+ chr17:41322498-41363708:+ chr17:41346981:+ chr20:3296317,chr20:3296320 chr17:43193446,chr17:43193443 NA NA chr20:3276964,chr20:3276967 chr17:41345463,chr17:41345460 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 0 1 2 41 312 ENST00000252032.10 ENST00000341165.10 upstream upstream none TTCATTTCCATGGATCAAGCAATTTTCTGATGATTGCCCTTTTCCCCAAATCGAAGATATACCAAGCATTTTACTCAGAG___GTCTTCTCCCTCTGGAAACAG...GGGATCTCTTTAAAAGTGATCCAGGAAGATGGATTATCTGTGGAACAAAAGAGATT|GACCTGCTGTCCTTTGAGCTGTTGGATATAAACATTGTTCAAGAGTTGGAGAGAGTGCCCCACAACACCCCTGTGG___ATGTGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATG GISLKVIQEDGLSVEQKRl|tccplscwi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6651 FBXL20::RFX2 ENSG00000108306.13::ENSG00000087903.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6078334:- chr19:5993175-6199583:- chr19:6078345:- chr17:39401853,chr17:39401853,chr17:39401858 chr19:6085869,chr19:6085858,chr19:6085871 NA NA chr17:37558106,chr17:37558106,chr17:37558111 chr19:6085880,chr19:6085869,chr19:6085882 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none |RFX1_transcription_activation_region______(100%),RFX_DNA-binding_domain(100%) |RFX1_trans_act(100%),RFX_DNA_binding(100%) 6 2 0 18 24 ENST00000577399.5 ENST00000590822.1 upstream downstream none GTCCGGCCCCGGCCCCCCAGGCCTCCCTGCAGCACCCCGTAATGTAATGCACTGGGGCGGGGGAGGCGGGGGAGGCGGCGGCGGCGGCAACCGCGGAGGCGCGGCGGCAGCCGCACTGCCCCAATCTAGACACATCCAGAAGAGGAGGAAAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|CTGTGCTGAGATCTGTTTTACATACCGTAAAGCTCACCCATTTGAAGTGTATGGTTCAGTGGGTCTTAGTATACTATCTTCACAGAACATTTTCATCACTCCGAAAAGAAGAAGAAACCCTGAACCTGCCATGAACAGCCACTTGCCCTTCC MAPSRDRLLHFGFKAT|lc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6652 C10orf95-AS1::PRXL2A ENSG00000269609.6::ENSG00000122378.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 644 TRUE 1155 TRUE 440 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102450330:+ chr10:104209573-104220863:+ chr10:104210087:+ PRXL2A ENSG00000122378.14 protein_coding + + chr10:80407829-80437115:+ chr10:80420466:+ chr10:82167585-82196871:+ chr10:82180222:+ chr10:102458586,chr10:102458585 chr10:80419462,chr10:80419458 NA NA chr10:104218343,chr10:104218342 chr10:82179218,chr10:82179214 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |AhpC/TSA_antioxidant_enzyme(100%) |AhpC-TSA_2(100%) 3 5 0 45 413 ENST00000594818.1 ENST00000606162.6 downstream upstream none GAAGAAAAGAGGTACAGAACACCCAGAGGTGCCCTCGATTCCGTCTTGCACTTGCCCTTCTCCCACCGTCCAGCAATAAAGCGAGAGAAACAAGTGCAGGAAACTGGCCGGCAGTCATGGGAGAAGCCAAAAAGACAG|AAATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTTGGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACCTGAAAACACTGGAGAAGG___AACCAAGGACTTTCAAAGCAAAGGAGCTATGGGAAAAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6653 C10orf95-AS1::PRXL2A ENSG00000269609.6::ENSG00000122378.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1155 TRUE 440 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102455427:+ chr10:104209573-104220863:+ chr10:104215184:+ PRXL2A ENSG00000122378.14 protein_coding + + chr10:80407829-80437115:+ chr10:80420466:+ chr10:82167585-82196871:+ chr10:82180222:+ chr10:102458586,chr10:102458585 chr10:80419462,chr10:80419458 NA NA chr10:104218343,chr10:104218342 chr10:82179218,chr10:82179214 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |AhpC/TSA_antioxidant_enzyme(100%) |AhpC-TSA_2(100%) 2 0 3 55 413 ENST00000657934.2 ENST00000606162.6 downstream upstream mismatches(1),multimappers(3) GGAAGGGAAAGTTGGGGCTTACTGCAGGGCAAGCTCCTTAGGAGAAGGTGGGGAGGAGGAAGGAGGGAGGTCCAGGCCCTTCTTCCATCCCACGTCCTCCACTTCCCAAGGTGCAAGAAGAAAAGAGGTACAGAACACCCAGAGGTGCCCTCGATTCCGTCTTGCACTTGCCCTTCTCCCACCGTCCAGCAATAAAGCGAGAGAAACAAGTGCAGGAAACTGGCCGGCAGTCATGGGAGAAGCCAAAAAGACAG___GAGTTCAGTGGCATGACCAGGGCTCACTGCAACCTTGATCTGGGCTCAAGTGATCCTCCTACCTCAGCTTCCTGAGTAGCTAGGACCACAG|AAATGTCTTTCCTCCAGGACCCAAGTTTCTTC...ATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTTGGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACCTGAAAACACTGGAGAAGG___AACCAAGGACTTTCAAAGCAAAGGAGCTATGGaAAAAAAATGGAGCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6654 C10orf95-AS1::PRXL2A ENSG00000269609.6::ENSG00000122378.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1155 TRUE 440 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102455427:+ chr10:104209573-104220863:+ chr10:104215184:+ PRXL2A ENSG00000122378.14 protein_coding + + chr10:80407829-80437115:+ chr10:80420483:+ chr10:82167585-82196871:+ chr10:82180239:+ chr10:102458586,chr10:102458585 chr10:80419462,chr10:80419458 NA NA chr10:104218343,chr10:104218342 chr10:82179218,chr10:82179214 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |AhpC/TSA_antioxidant_enzyme(100%) |AhpC-TSA_2(100%) 1 0 3 55 383 ENST00000594818.1 ENST00000372185.5 downstream upstream multimappers(3) CTTGCACTTGCCCTTCTCCCACCGTCCAGCAATAAAGCGAGAGAAACAAGTGCAGGAAACTGGCCGGCAGTCATGGGAGAAGCCAAAAAGACAG___GAGTTCAGTGGCATGACCAGGGCTCACTGCAACCTTGATCTGGGCTCAAGTGATCCTCCTACCTCAGCTTCCTGAGTAGCTAGGACCACAG|GACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGCAGGAGCCCTGGGGGCTGCTGCCTTGGCATTGCTGCTTGCCAACACAGACGTGTTTCTGTCCAAGCCCCAGAAAGCGGCCCTGGAGTACCTGGAGGATATAGACCTGAAAACACTGGAGAAGG___AACCAAGGACTTTCAAAGCAAAGGAGCTATGGaAAAAAAATGGAGCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6655 C10orf95-AS1::PRXL2A ENSG00000269609.6::ENSG00000122378.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1155 TRUE 440 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102452187:+ chr10:104209573-104220863:+ chr10:104211944:+ PRXL2A ENSG00000122378.14 protein_coding + + chr10:80407829-80437115:+ chr10:80420466:+ chr10:82167585-82196871:+ chr10:82180222:+ chr10:102458586,chr10:102458585 chr10:80419462,chr10:80419458 NA NA chr10:104218343,chr10:104218342 chr10:82179218,chr10:82179214 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication low none |AhpC/TSA_antioxidant_enzyme(100%) |AhpC-TSA_2(100%) 0 0 0 22 413 ENST00000663480.2 ENST00000606162.6 downstream upstream mismappers(1) AGCGATTCTCCCACCTCAGCCTCCCGAGGAGCTGGGATTACAG|AAATGTCTTTCCTCCAGGACCCAAGTTTCTTCACCATGGGGATGTGGTCCATTGGTGC...ATTTATCCGTCTGGGAGTGTGGTACAACTTCTTCCGAGCCTGGAACGGAGGCTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTTGGGGGAGTTTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6661 APAF1::ANKS1B ENSG00000120868.14::ENSG00000185046.21 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APAF1 ENSG00000120868.14 protein_coding + + chr12:98645290-98735433:+ chr12:98645835:+ chr12:99039068-99129211:+ chr12:99039613:+ ANKS1B ENSG00000185046.21 protein_coding - + chr12:98726457-99984936:- chr12:99174097:+ chr12:99120235-100378714:- chr12:99567875:+ chr12:98647573,chr12:98647574 chr12:99109443,chr12:99109441 NA NA chr12:99041351,chr12:99041352 chr12:99503221,chr12:99503219 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 2 2 1 32 6 ENST00000551964.6 unknown downstream upstream none CCCGGTGGAAAACTCCTGTTGCCGTTTCCCTCCACCGGCCTGGAGTCTCCCAGTCTTGTCCCGGCAGTGCCGCCCTCCCCACTAAGACCTAGGCGCAAAGGCTTGG|GAGATCCTCTTCCTTGATGAAGCAAGATTCTATGTTGAGGCCCGTGCCAAGGAATTGAAGAAAATCTATGGCCAACAGCCATCTAAGAAAGGAGGCCCTCAGTCCAACAGATCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6662 DTNB::LINC00620 ENSG00000138101.20::ENSG00000224514.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DTNB ENSG00000138101.20 protein_coding - - chr2:25377198-25673647:- chr2:25531473:- chr2:25600067-25896516:- chr2:25754342:- LINC00620 ENSG00000224514.3 lncRNA + - chr3:13650696-13746638:+ chr3:13688221:- chr3:13692196-13788135:+ chr3:13729720:- chr2:25488860,chr2:25488863 chr3:13740991,chr3:13740991 NA NA chr2:25711729,chr2:25711732 chr3:13782489,chr3:13782489 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none EF-hand(100%),EF_hand(100%),Zinc_finger__ZZ_type(100%)| EF-hand_2(100%),EF-hand_3(100%),ZZ(100%)| 2 2 1 278 17 ENST00000288642.12 unknown upstream downstream mismatches(1) GTTTTCCACAGCAG___AGAAAGATAATGCTAAATATGTTTTTAGACACAATGATGGCTGACCCTCCTCCCCAGTGCCTTGTCTGGCTACCTCTCATGCACAGG...GAAATCTCCTGCAAAGAAGCTGAGCCATGCAATTAGTAAATCTTTGGGGTGTGTACCCACGAGAGAACCCCCGCATCCTGTTTTTCCTGAGCAACCAGAGAAACCACTTGACCTTGCACATATAGT|CTCACCAGGTCCTGTGCCTCTCCGGGCCTTCACACACTGTCACTTTCAGGAGCCCATGTCTTGCTGGAGCCCTTCCCTGG...CTGgGGAATAGGACAACCACGTCTCACTCACGGGAGAATGCACCATAACATACATAAAGCACCTCGTGGTGCTCACAAAAGTCGAAGATTTTCATCTCAAC...GGGCAGCCTGCAGAAGCCAGGGCTTAGCCACAGGCCCCCTACCTCCCACAAGGCTCAGCAGCCGCAGACCCTCCCTTCTGATAACAAACAGCACAATTTTG KSPAKKLSHAISKSLGCVPTREPPHPVFPEQPEKPLDLAHIv|spgpvplrafthchfqepmscwspsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6663 ENSG00000286481::DLGAP3 ENSG00000286481.2::ENSG00000116544.12 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286481 ENSG00000286481.2 lncRNA + + chr2:121902501-122887691:+ chr2:121944447:+ chr2:122660077-123645267:+ chr2:122702023:+ DLGAP3 ENSG00000116544.12 protein_coding - - chr1:34865436-34929650:- chr1:34907437:- chr1:35331037-35395251:- chr1:35373038:- chr2:121974707,chr2:121974706,chr2:121974708 chr1:34922555,chr1:34922556,chr1:34922674 NA NA chr2:122732283,chr2:122732282,chr2:122732284 chr1:35388156,chr1:35388157,chr1:35388275 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation high none |Guanylate-kinase-associated_protein_(GKAP)_protein(100%) |GKAP(100%) 1 2 1 3 3 ENST00000657880.1 ENST00000373347.6 downstream downstream none GGAGCACTGCCGTGGGAACAGAGTTGGAACTCATCCAAAAG___AATAAAAGACAACTGTGTTGGAAGATTGCCAAGGTTTGTAGCTGTGCCACCGCAGACTTCAGAGATGAACACTGCCTTGGAGACGAGGAGGATTCAAGTTGCAGAAGCATTTAG|GATTCAGTGGTCCTGAGCCTTCTGAAGTTAGGCTTCTGCCTGGTGGTGGGGATCCTGACATCAAGGATGGGACACCCTGGATG___GAGGTTCCTGGGGCCTGGCCCCCAAGACTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6664 GNG12-AS1::IL23R ENSG00000232284.9::ENSG00000162594.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNG12-AS1 ENSG00000232284.9 lncRNA + + chr1:67832293-68202987:+ chr1:67832436:+ chr1:68297976-68668670:+ chr1:68298119:+ IL23R ENSG00000162594.17 protein_coding + + chr1:67138907-67259979:+ chr1:67168092:+ chr1:67604590-67725662:+ chr1:67633775:+ chr1:67865927,chr1:67865928 chr1:67166224,chr1:67166222 NA NA chr1:68331610,chr1:68331611 chr1:67631907,chr1:67631905 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none none none 1 1 2 8 2 ENST00000688125.2 ENST00000637002.1 downstream upstream none AGCCATTAAACGCGCCCTGACACGTGGGCGCAGGAACCTCCCTTCTACCTCTGGTGTTCAGAGATTTCCTTCTCGACCCACTTGTTTGTATACAACCACGCCCGGCAGGATGACCACCAGATGACCGGCCGCAGCAATGCCTCCACTCAGTCCCAGTTGGGCAAAGTTTCACTCCACTGCGGCGACGTGAACAAGAATCACGGCTTCCTTATC|AGGGAAACAGTCTTTTCCTGCTTCCAGACATGAATCAGGTCACTATTCAATGGGATGCAGTAATAGCCCTTTACATACTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6667 RANBP10::PKP2 ENSG00000141084.12::ENSG00000057294.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1158 TRUE 441 RANBP10 ENSG00000141084.12 protein_coding - - chr16:67723070-67806560:- chr16:67744288:- chr16:67756973-67840463:- chr16:67778191:- PKP2 ENSG00000057294.18 protein_coding - - chr12:32790745-32896798:- chr12:32802556:- chr12:32943679-33049732:- chr12:32955490:- chr16:67738917,chr16:67738920 chr12:32814809,chr12:32814809 NA NA chr16:67772820,chr16:67772823 chr12:32967743,chr12:32967743 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none SPRY_domain(69%)| SPRY(86%)| 2 0 2 170 166 ENST00000317506.8 ENST00000700559.2 upstream downstream none TTTTTTTTGAAGTTACATGGGAATAGGACTCTCGGCTCAAGGCGTCAACATGAACAGACTTCCTG___GTTGGGACAAACATTCCTATGGTTACCATGGTGATGATGGGCATTCGTTCTGCTCCTCGGGGACTGGCCAGCCCTATGGTCCCACATTCACCACAGGAGACGTGATCGGCTGCTGTGTCAACCTCATCAATGGCACCTGCTTCTACACCAAGAATGGCCACAGCCTTG|ATGCCGACATCAGTGGCTCAGACAGTTGTCCAGAAGGAAAGTGGCCTGCAGCACACCCGAAAGATGCTGCATGTTGGTGAC ff*sYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSL|dadisgsdscpegkwpaahpkdaacw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6668 RANBP10::PKP2 ENSG00000141084.12::ENSG00000057294.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1158 TRUE 441 RANBP10 ENSG00000141084.12 protein_coding - - chr16:67723070-67806560:- chr16:67772034:- chr16:67756973-67840463:- chr16:67805937:- PKP2 ENSG00000057294.18 protein_coding - - chr12:32790745-32896798:- chr12:32802556:- chr12:32943679-33049732:- chr12:32955490:- chr16:67738917,chr16:67738920 chr12:32814809,chr12:32814809 NA NA chr16:67772820,chr16:67772823 chr12:32967743,chr12:32967743 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none SPRY_domain(25%)| SPRY(47%)| 0 1 0 117 166 ENST00000317506.8 ENST00000070846.11 upstream downstream none CTTTGAAGTGAAGATTGTCAGCAAAGGAAGAGATGG___TTACATGGGAATAGGACTCTCGGCTCAAGGCGTCAACATGAACAGACTTCCTG|ATGCCGACATCA...ATTGAAACTACAGCCTCTGCCTGTTACACATTGAACAACATAATCCAAAACAGTTACCAGAATGCACGCGACCTTCTAAACACCGGGGGCATCCAGAAAAT FEVKIVSKGRDGYMGIGLSAQGVNMNRLP|dadi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6670 ENSG00000289503::PRKCH ENSG00000289503.1::ENSG00000027075.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1159 TRUE 442 ENSG00000289503 ENSG00000289503.1 protein_coding + + chr14:62075340-62128421:+ chr14:62081274:+ chr14:62542058-62595139:+ chr14:62547992:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:62119876,chr14:62119874 chr14:61340446,chr14:61340441 NA NA chr14:62586594,chr14:62586592 chr14:61807164,chr14:61807159 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) C2(1%)|C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 2 1 0 196 23 ENST00000553426.2 ENST00000332981.11 downstream upstream none AATCCACAGAGGGCAGCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTATGCCACTGACAGCTCCTCCATGTGGAGTCCAGAG___GAA...CCGCCAGCCAGAAGCTCACAGTGACCATTGTGAGGGCACAGGGCCTCCCAGATAAGGACCGAAGTGGTGTCAACTCCTGGCAAGTTCATGTAGTGCTGCTG...AGCCACCTGCACCCAGAAGGGGAAATGAAAGTGACTCTGGTTCTGGAGCCAAGAAGTAATATAAGC|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAATAACCCTTACCGGGAGTTTCACTGAAG___CTACTCTCCAGAGAGACCGGATCTTCAAACATTTTACCAGGAAGCGCCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6671 ENSG00000289503::PRKCH ENSG00000289503.1::ENSG00000027075.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1159 TRUE 442 ENSG00000289503 ENSG00000289503.1 protein_coding + + chr14:62075340-62128421:+ chr14:62118814:+ chr14:62542058-62595139:+ chr14:62585532:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:62119876,chr14:62119874 chr14:61340446,chr14:61340441 NA NA chr14:62586594,chr14:62586592 chr14:61807164,chr14:61807159 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) C2(100%)|C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 1 2 23 ENST00000553426.2 ENST00000332981.11 downstream upstream duplicates(1) ATGAGCCTGAGGCTGTGAGAAATGCTCGCTGTGCAAAGGGGAACTCTCACCAGATTTTCTGAAACTGTTCTAGAAATACACTTTTCGGATTGATTCAGCATTACCAG|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAATAACCCTTACCGGGAGTTTCACTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6672 ENSG00000289503::PRKCH ENSG00000289503.1::ENSG00000027075.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1159 TRUE 442 ENSG00000289503 ENSG00000289503.1 protein_coding + + chr14:62075340-62128421:+ chr14:62100707:+ chr14:62542058-62595139:+ chr14:62567425:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:62119876,chr14:62119874 chr14:61340446,chr14:61340441 NA NA chr14:62586594,chr14:62586592 chr14:61807164,chr14:61807159 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) C2(100%)|C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 1 234 23 ENST00000553426.2 ENST00000332981.11 downstream upstream none GTAAAGAGATGATTGGCTGGATTGCCCTGGGCCAGAACAGCAGTGGAGAGGAGGAACAAGATCACTGGGAGGAGATGAAGGAAACCAAAGGCCAGCAGATCT...TTTGCTGGAATCCTAG|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAATAACCCTTACCGGGAGTTTCACTGAAG___CTACTCTCCAGAGAGACCGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6675 ENSG00000255367::IFTAP ENSG00000255367.4::ENSG00000166352.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255367 ENSG00000255367.4 lncRNA - - chr11:3475778-3581211:- chr11:3580927:- chr11:3497008-3602441:- chr11:3602157:- IFTAP ENSG00000166352.18 protein_coding + - chr11:36594369-36675695:+ chr11:36604911:- chr11:36615919-36697245:+ chr11:36626461:- chr11:3541237,chr11:3541241 chr11:36618094,chr11:36618095 NA NA chr11:3562467,chr11:3562471 chr11:36639644,chr11:36639645 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 0 1 2 3 ENST00000527970.1 unknown upstream downstream none GAAGCGCACAGCCCGAGGACGGGGAGGACGCGCCGCaGCCGGGCAGGAAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|ATAATATCAAGAAGAAAGAAAAACATCCAGTGAGAAATTCAGATTCTGTGACTTGAGAGAAACCTGAAGGTTATCTAGTCCAATCATAGAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6677 HIF1A::SYT16 ENSG00000100644.17::ENSG00000139973.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 646 TRUE 1160 TRUE 443 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:62075135:+ chr14:62278692-62579268:+ chr14:62541853:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |C2_domain(100%) |C2(100%) 20 21 35 3486 183 ENST00000337138.9 ENST00000683842.1 downstream upstream duplicates(5),mismappers(1),mismatches(12) AGGAGGATCACCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATTGCCGCCCGCTTCTCTCTAGTCTCACGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGACTTGCCTTTCCTTCTCTTCTCCGCGTGTGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCCGCCGTGAAGACATCGCGGGGACCGATTCACCATGGAGGGCGCCGGCGGCGCGAACGACAAGAAAAA|ATTTGGATGGAGCCAGCCAACGGCGTTATTCTGAGAATCTCTCCTACGGTGAAGATGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATGCCAAACACCACGGCACATCTCACCAAGAGTCCAGTGTGGTCCAAAGCCTCAGGCGCCAATCCACAGAGGGCAGCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTA MEGAGGANDKKk|fgwsqptalf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 6679 HIF1A::SYT16 ENSG00000100644.17::ENSG00000139973.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 647 TRUE 1160 TRUE 443 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:62069603:+ chr14:62278692-62579268:+ chr14:62536321:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |C2_domain(100%) |C2(100%) 12 8 42 3486 75 ENST00000337138.9 ENST00000683842.1 downstream upstream duplicates(3),mismatches(11) AGGAGGATCACCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATTGCCGCCCGCTTCTCTCTAGTCTCACGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGACTTGCCTTTCCTTCTCTTCTCCGCGTGTGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCCGCCGTGAAGACATCGCGGGGACCGATTCACCATGGAGGGCGCCGGCGGCGCGAACGACAAGAAAAA|TCAACAGCTTTGGGGATGACGAAGAGCTGTCCACATCTTCTGACAGTGACGAGGAGGTGATCAAACAATTTGAGATTTCCGTGTCCCGGTCCCAGAGTTTCCGTTCAGTGACATCTGAGAAAGGAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCAGCCGTTCGTTGTTGACACACGGAGAAGATGGCACAGAAGTATCTGCCTGCGAAG___ATTTGGATGGAGCCAGCCAACGGCGTTATTCTGAGAATCTCTCCTACGGTGAAGATGACCAC MEGAGGANDKKn|qqlwg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 6684 ENSG00000232536::CTXND2 ENSG00000232536.1::ENSG00000283324.1 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1161 FALSE NA ENSG00000232536 ENSG00000232536.1 lncRNA + + chr1:151540516-151561855:+ chr1:151540909:+ chr1:151512992-151534331:+ chr1:151513385:+ CTXND2 ENSG00000283324.1 protein_coding + + chr1:150887136-150913292:+ chr1:150912242:+ chr1:150859612-150885768:+ chr1:150884718:+ chr1:151546238,chr1:151546115,chr1:151546237 chr1:150908085,chr1:150907703,chr1:150908081 NA NA chr1:151518714,chr1:151518591,chr1:151518713 chr1:150880561,chr1:150880179,chr1:150880557 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication low none |Cortexin_of_kidney(100%) |Cortexin(100%) 1 1 0 13 652 ENST00000434112.1 ENST00000636087.1 downstream upstream none GTGGGTCGAGGGTCCTGGTGACCTCCGAGGCCCTCCAAAGAATTTCATCATGGTGCTTTGGATGATCAGTAACAAGAAAAATG|GAATATGACAAATCTGAAGCTATACCTGAGGAATTAGCTG...ACGgGGTGCAAGTCCCCAgGGAAGATTCAAGCCTGTCCAGTGGTGTTGATGTGGACAAAGGCTTTGCCATTGCCTTTGTTGTTCTTCTGTTTCTGTTCCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6686 CNBD2::HSF2BP ENSG00000149646.12::ENSG00000160207.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNBD2 ENSG00000149646.12 protein_coding + + chr20:35954564-36030700:+ chr20:35987533:+ chr20:34542486-34618622:+ chr20:34575455:+ HSF2BP ENSG00000160207.9 protein_coding - + chr21:43529186-43659488:- chr21:43631441:+ chr21:44949066-45079369:- chr21:45051322:+ chr20:35990596,chr20:35990595 chr21:43630570,chr21:43630566 NA NA chr20:34578518,chr20:34578517 chr21:45050451,chr21:45050447 NA NA sense antisense out-of-frame CDS intron translocation/5'-5' medium none Cyclic_nucleotide-binding_domain(100%)| cNMP_binding(100%)| 0 1 2 2 3 ENST00000373973.7 unknown downstream upstream none CTGATCTCAAAAGATTTTGGAGAGTCACCCTTCATCATGTTTATCAGCAAG|AGGGCCGAGCTCACTCCAGCCAGACCAGCTAGAATGACCACCTCATCAGT...TGTGTAGACGCGATGTGCCACAACTCCACCTCCTAATCCATCCTCACCCACTGTCAG___GTTTCACTTTACTGCCAGACTAGTACTCAAGGCTTCAAGAAAAC LISKDFGESPFIMFISK|raeltparparmttss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6706 SYT16::ZFYVE19 ENSG00000139973.18::ENSG00000166140.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:61812810:+ chr14:62278692-62579268:+ chr14:62279528:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40813338:+ chr15:41099284-41107282:+ chr15:41105536:+ chr14:61877320,chr14:61877319 chr15:40813108,chr15:40813104 NA NA chr14:62344038,chr14:62344037 chr15:41105306,chr15:41105302 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none |zf-CCHC_3(100%) 0 1 0 5 197 ENST00000636133.1 ENST00000355341.8 downstream upstream none CCCCCTCGTCCGACCATGGCGACTGACA|TGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGCAG___CTCACTGAAGAAGCTgCCCTGGATGAGGCAAGTGGCTTTAACATCCC MATD|mTLQDYRLPDSDDDEDEETAIQRVLQQLTEEAaLDEASGFNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6710 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 648 TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158713800:+ chr6:159071046-159185908:+ chr6:159134832:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cation-independent_mannose-6-phosphate_receptor_repeat(7%)|C2_domain(100%) CIMR(13%)|C2(100%) 69 79 162 686 203 ENST00000676781.1 ENST00000360448.8 downstream upstream duplicates(135),low_entropy(4),mismatches(61),multimappers(4) GCCTGTCCCCCCGGCACTGCCGCCTGCCTGGTAAGAGGACACCAGGCGTTTGATGTTGGCCAGCCCCGGGACGGACTGAAGCTGGTGCGCAAGGACAG___GCTTGTCCTGAGTTACGTGAGGGAAGAGGCAGGAAAGCTAGACTTTTGTGATGGTCACAGCCCTGCGGTGACTATTACATTTGTTTGCCCGTCGGAGCGGAGAGAG|TTACAGGAATTTGGTCAGTTTAGAGGATTTAATAAGTCCGTGGAAAATTTGTTTCTGTCTCTTGCTACCCACGTGAAAA___AGCTCTCCAAATCCCAGAATGATATGACTTCTGAGAAGCATCTTCTCGCCACGGGCCCCAGGCAGTGTGTGGGACAGACAGAGAGACGGAGCCAGTCTGACACTGCGGTCAACGTCACCACCAGG___AAGGTCAGTGCACCAGATATTCTGAAACCTCTCAATCAAGAGGAT ACPPGTAACLVRGHQAFDVGQPRDGLKLVRKDRLVLSYVREEAGKLDFCDGHSPAVTITFVCPSERRE|LQEFGQFRGFNKSVENLFLSLATHVKKLSKSQNDMTSEKHLLATGPRQCVGQTERRSQSDTAVNVTTRKVSAPDILKPLNQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6711 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 649 TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158725503:+ chr6:159071046-159185908:+ chr6:159146535:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cation-independent_mannose-6-phosphate_receptor_repeat(7%)|C2_domain(100%) CIMR(13%)|C2(100%) 66 52 99 686 745 ENST00000676781.1 ENST00000367081.7 downstream upstream duplicates(107),low_entropy(1),mismatches(49),multimappers(6) GCCGCCTGCCTGGTAAGAGGACACCAGGCGTTTGATGTTGGCCAGCCCCGGGACGGACTGAAGCTGGTGCGCAAGGACAG___GCTTGTCCTGAGTTACGTGAGGGAAGAGGCAGGAAAGCTAGACTTTTGTGATGGTCACAGCCCTGCGGTGACTATTACATTTGTTTGCCCGTCGGAGCGGAGAGAG|AAGGTCAGTGCACCAGATATTCTGAAACCTCTCAATCAAGAGGATCCCAAATGCTCTACTAACCCTATTTTGAAGCAACAGAATCTCCCATCCAGTCCGGCACCCAGTACCATATTCTCTGGAGGTTTTAGACAC___GGAAGTTTAATTAGCATTGACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCC AACLVRGHQAFDVGQPRDGLKLVRKDRLVLSYVREEAGKLDFCDGHSPAVTITFVCPSERRE|KVSAPDILKPLNQEDPKCSTNPILKQQNLPSSPAPSTIFSGGFRHGSLISIDSTCTEMGNFDNANVTGEIEF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6712 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158718087:+ chr6:159071046-159185908:+ chr6:159139119:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Cation-independent_mannose-6-phosphate_receptor_repeat(7%)|C2_domain(100%) CIMR(13%)|C2(100%) 1 0 124 686 365 ENST00000676781.1 ENST00000360448.8 downstream upstream duplicates(65),low_entropy(1),mismatches(40),multimappers(4) TGCCGCCTGCCTGGTAAGAGGACACCAGGCGTTTGATGTTGGCCAGCCCCGGGACGGACTGAAGCTGGTGCGCAAGGACAG___GCTTGTCCTGAGTTACGTGAGGGAAGAGGCAGGAAAGCTAGACTTTTGTGATGGTCACAGCCCTGCGGTGACTATTACATTTGTTTGCCCGTCGGAGCGGAGAGAG|AGCTCTCCAAATCCCAGAATGATATGACTTCTGAGAAGCATCTTCTCGCCACGGGCCCCAGGCAGTGTGTGGGACAGACAGAGAGACGGAGCCAGTCTGACACTGCGGTCAACGTCACCACCAGG___AAGGTCAGTGCACCAGATATTCTGAAACCTCTCAATCAAGAGGATCCCAAATGCTCTACTAACCCTATTTTGAAGCAACAGAATCTCC AACLVRGHQAFDVGQPRDGLKLVRKDRLVLSYVREEAGKLDFCDGHSPAVTITFVCPSERRE|sspnprmi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6713 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158718089:+ chr6:159071046-159185908:+ chr6:159139121:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Cation-independent_mannose-6-phosphate_receptor_repeat(7%)|C2_domain(100%) CIMR(13%)|C2(100%) 0 0 0 686 365 ENST00000676781.1 ENST00000360448.8 downstream upstream mismatches(1) CAGCCCCGGGACGGACTGAAGCTGGTGCGCAAGGACAG___GCTTGTCCTGAGTTACGcGAGGGAAGAGGCAGGAAAGCTAGACTTTTGTGATGGTCACAGCCCTGCGGTGACTATTACATTTGTTTGCCCGTCGGAGCGGAGAGAG|CTCTCCAAATCCC QPRDGLKLVRKDRLVLSYaREEAGKLDFCDGHSPAVTITFVCPSERRE|LSKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6714 SCML2::SH3KBP1 ENSG00000102098.19::ENSG00000147010.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 650 TRUE 1166 TRUE 445 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18320332:- chrX:18257433-18372808:- chrX:18338452:- SH3KBP1 ENSG00000147010.19 protein_coding - - chrX:19533977-19887600:- chrX:19546050:- chrX:19552095-19905718:- chrX:19564168:- chrX:18313406,chrX:18313410,chrX:18313414 chrX:19546547,chrX:19546548,chrX:19546548 NA NA chrX:18331526,chrX:18331530,chrX:18331534 chrX:19564665,chrX:19564666,chrX:19564666 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none mbt_repeat(51%)| MBT(94%)| 77 64 86 244 580 ENST00000251900.9 ENST00000397821.8 upstream downstream duplicates(113),mismappers(2),mismatches(33) CTGGATGGTAGTGACAACAGAAATGATTTTTGGAGGCTTGTCGATTCCCCAGAtATACAACCTGTTGGGACATGTGAAAAGGAAGGAGACTTACTTCAACCTCCACTAG___GGTACCAGATGAATACATCCTCCTGGCCGATGTTCCTCTTAAAGACACTAAATGGGTCTGAAATGGCATCTGCCACATTATTTAAGAAG|TCATCCCTTTCAAGCCCTGATATCTTCGACTCCCCAAGTCCCGAAGAGGATAAGGAGGAACACATTTCACTTGCGCACAGAGGAGTGGACGCGTCAAAGAAAACTTCCAAGACTGTTACCATATCCCAA___GTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCCTCAGCGGCGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGC LDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKK|SSLSSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6715 SCML2::SH3KBP1 ENSG00000102098.19::ENSG00000147010.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1166 TRUE 445 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18320332:- chrX:18257433-18372808:- chrX:18338452:- SH3KBP1 ENSG00000147010.19 protein_coding - - chrX:19533977-19887600:- chrX:19542193:- chrX:19552095-19905718:- chrX:19560311:- chrX:18313406,chrX:18313410,chrX:18313414 chrX:19546547,chrX:19546548,chrX:19546548 NA NA chrX:18331526,chrX:18331530,chrX:18331534 chrX:19564665,chrX:19564666,chrX:19564666 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none mbt_repeat(51%)| MBT(94%)| 0 1 34 244 585 ENST00000251900.9 ENST00000397821.8 upstream downstream duplicates(12),mismatches(10) GGCTTGTCGATTCCCCAGAtATACAACCTGTTGGGACATGTGAAAAGGAAGGAGACTTACTTCAACCTCCACTAG___GGTACCAGATGAATACATCCTCCTGGCCGATGTTCCTCTTAAAGACACTAAATGGGTCTGAAATGGCATCTGCCACATTATTTAAGAAG|GTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCCTCAGCGGCGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCCAACTCCCCGTCTCTGTTCGGCACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAGGTCCGCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAA___ACGAGA LVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKK|VSDNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHRANSPSLFGTEGKPKMEPAASSQAAVEELRTQVRELRSIIETMKDQQKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6717 CHD3::DNAH2 ENSG00000170004.19::ENSG00000183914.15 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 651 FALSE NA FALSE NA CHD3 ENSG00000170004.19 protein_coding + + chr17:7884796-7912760:+ chr17:7898102:+ chr17:7788114-7816078:+ chr17:7801420:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7821243:+ chr17:7621062-7737060:+ chr17:7724561:+ chr17:7898521 chr17:7820683 NA NA chr17:7801839 chr17:7724001 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CHDNT_(NUC034)_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),PHD-finger(100%)|Dynein_heavy_chain_AAA_lid_domain(56%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%) CHDNT(100%),Chromo(100%),PHD(100%)|AAA_lid_11(100%),Dynein_C(100%),Dynein_heavy(100%) 21 68 46 279 201 ENST00000380358.9 ENST00000572933.6 downstream upstream duplicates(40),inconsistently_clipped(3),mismatches(4) CCCGCACTATGCTGAGATGGAGGAGAAGTACTATCGTTTTGGCATCAAGCCAGAGTGGATGACCGTCCACCGCATCATCAACCACAG___TGTGGATAAAAAGGGGAATTACCACTATCTAGTAAAATGGAGGGACTTACCATATGACCAGTCCACGTGGGAGGAAGATGAAATGAATATCCCTGAATACGAAGAACATAAGCAAAGCTACTGGAGACACCG|GTACACCTGCCGTACCCTTTTCGAACGCCACAAACTACTATTCAGTTTTCATATGTGTGCCAAAATCTTGGAGACTTCTGGCAAGCTCAACATGGATGAATACAACTTCTTTCTACGTGGGGGTGTG___GTCTTGGATCGGGAGGGCCAAATGGACAATCCATGTAGTAGCTGGCTTGCAGATGCCTACTGGGATAACATCACAGAGCTAGACAAACTGACCAACTTCCACGGACTCATGAACTCCTTTGAGCAGTACCCTCGTGACTGGCACCTGTGGTATACCAATGCTGCCCCGGAG PHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHr|YTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCSSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNAAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6720 EPHA2::FBXO42 ENSG00000142627.13::ENSG00000037637.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 652 TRUE 1167 FALSE NA EPHA2 ENSG00000142627.13 protein_coding - - chr1:16124337-16156069:- chr1:16148378:- chr1:16450832-16482564:- chr1:16474873:- FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16256759:- chr1:16573335-16678975:- chr1:16583254:- chr1:16144192,chr1:16144202 chr1:16287001,chr1:16287008 NA NA chr1:16470687,chr1:16470697 chr1:16613496,chr1:16613503 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ephrin_receptor_ligand_binding_domain(100%)|Galactose_oxidase__central_domain(28%),Kelch_motif(100%) Ephrin_lbd(100%)|Kelch_1(100%),Kelch_2(100%),Kelch_3(8%),Kelch_4(5%),Kelch_5(8%) 25 32 34 643 152 ENST00000358432.8 ENST00000375592.8 upstream downstream duplicates(40),mismatches(37) CGCAAAGGCTTCTACCTGGCCTTCCAGGATATCGGTGCCTGTGTGGCaCTaCTCTCCGTCCGTGTCTACTACAAGAAGTGCCCCGAGCTGCTGCAGGGCCTGGCCCACTTCCCTGAGACCATCGCCGGCTCTGATGCACCTTCCCTGGCCACTGTGGCCGGCACCTGTGTGGACCATGCCGTGGTGCCACCGGGGGGTGAAGAGCCCCGTATGCACTGTGCAGTGGATGGCGAGTGGCTGGTGCCCATTGGGCAGTGCCTGTGCCAGGCAGGCTACGAGAAGGTGGAGGATGCCTGCCAGG|GGTCCTATCCTTCCCCCAAAGCTGGAGCAACTCTGGTCGTGTACAAGGACTTGCTAGTGCTGTTTGGTGGCTGGACGCGGCCAAGCCCTTATCCCCTACACCAGCCAGAGAGATTCTTTGATGAAATACACACTTACTCACCCTCTAAAAATTG___GTGGAACTGCATTGTGACAACCCATGGGCCACCTCCCATGGCTGGCCACTCCTCCTGTGT RKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQ|gSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Ephrin type-A receptor 2 TK Eph P29317 FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 16474873 TRUE 16583254 TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6722 ZFP36L1::ACTN1 ENSG00000185650.10::ENSG00000072110.16 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 653 TRUE 1168 TRUE 446 ZFP36L1 ENSG00000185650.10 protein_coding - - chr14:68787660-68796253:- chr14:68796075:- chr14:69254377-69262970:- chr14:69262792:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68912242:- chr14:69340845-69446157:- chr14:69378959:- chr14:68795036,chr14:68795051 chr14:68916913,chr14:68916925 NA NA chr14:69261753,chr14:69261768 chr14:69383630,chr14:69383642 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(60%),EF-hand_domain_pair(100%),Spectrin_repeat(100%) Tis11B_N(0%)|CAMSAP_CH(100%),CH(24%),EF-hand_5(100%),EF-hand_8(100%),EFhand_Ca_insen(100%),Spectrin(100%) 4 75 5 9 3123 ENST00000557086.1 ENST00000193403.10 upstream downstream duplicates(27),mismatches(5) CGCTCCAGGCGAATGGGGAGGGCCCGGAAGTCGGGCCTGGGACAGAGGAGCCGGCCCACCGCCTCCCGGTCGGAAGCGGCAGTGCAG|AAATCGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAG___AGACTTCAGCCAAGGAAGGGCTGCTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAG___CTGGAAGGATGGCCTCGGCTTCTGTGCTTTGATCCACCGACACCGGCCCGAGCTGATTGACTACGGGAAGCTGCGGAAG___GATGATCCACTCACAAATCTGAATACGGCTTTTGACGTGGCAGAGAAGTACCTGGACATCCCCAAGATGCTGGATGCCGAAG___ACATCGTTGGAACTGCCCGACCGGATGAGAAAGCCAT MGRARKSGLGQRSRPTASRSEAAVQ|kswmgm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6723 ZFP36L1::ACTN1 ENSG00000185650.10::ENSG00000072110.16 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 654 TRUE 1168 TRUE 446 ZFP36L1 ENSG00000185650.10 protein_coding - - chr14:68787660-68796253:- chr14:68796043:- chr14:69254377-69262970:- chr14:69262760:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68912242:- chr14:69340845-69446157:- chr14:69378959:- chr14:68795036,chr14:68795051 chr14:68916913,chr14:68916925 NA NA chr14:69261753,chr14:69261768 chr14:69383630,chr14:69383642 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(60%),EF-hand_domain_pair(100%),Spectrin_repeat(100%) Tis11B_N(0%)|CAMSAP_CH(100%),CH(24%),EF-hand_5(100%),EF-hand_8(100%),EFhand_Ca_insen(100%),Spectrin(100%) 0 71 5 9 3123 ENST00000557022.1 ENST00000193403.10 upstream downstream duplicates(29),mismatches(4) CGGCAGTGCAGGTGAGGCGGCGGCCAGCCTGGGGACTGCGCGG|AAATCGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAG___AGACTTCAGCCAAGGAAGGGCTGCTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAG___CTGGAAGGATGGCCTCGGCTTCTGTGCTTTGATCCACCGACACCGGCCCGAGCTGATTGACTACGGGAAGCTGCGGAAG___GATGATCCACTCACAAATCTGAATACGGCTTTTGACGTGGCAGAGAAGTACCTGGACATCCCCAAGATGCTGGATGCCGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6724 CNOT6::SLC1A3 ENSG00000113300.13::ENSG00000079215.15 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT6 ENSG00000113300.13 protein_coding + + chr5:180494379-180578358:+ chr5:180550117:+ chr5:179921379-180005358:+ chr5:179977117:+ SLC1A3 ENSG00000079215.15 protein_coding + + chr5:36596588-36688334:+ chr5:36671029:+ chr5:36596690-36688436:+ chr5:36671131:+ chr5:180550982,chr5:180550980 chr5:36668509,chr5:36668504 NA NA chr5:179977982,chr5:179977980 chr5:36668611,chr5:36668606 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Leucine_rich_repeat(83%)|Sodium:dicarboxylate_symporter_family(87%) LRR_4(100%),LRR_8(4%)|SDF(19%) 27 19 30 252 323 ENST00000261951.9 ENST00000680318.1 downstream upstream duplicates(34),low_entropy(1),mismappers(3),mismatches(3) ACAATTATGTCTTCTGAGGAAGCAGCAAATGGAAAGAAATCCCACTGGGCAGAGCTTGAAATAAGTG___GAAAAGTAAGAAGCTTAAGCGCATCTTTGTGGTCACTAACTCACCTGACAGCTTTGCATTTGAGTGACAATTCCCTGTCCCGAATTCCTTCAGACATTGCCAAGCTTCACAATCTGGTGTATTTGGACCTGTCATCTAATAAAATTCGTAGCTTACCCGCAGAACTCGGAAACATGGTATCACTCAG|GAATGGCGGCGCTAGATAGTAAGGCATCAGGGAAGATGGGAATGCGAGCTGTAGTCTATTATATGACTACCACCATCATTGCTGTGGTGATTGGCATAATCATTGTCATCATCATCCATCCTGGGAAGGGCACAAAGGAAAACATGCACAGAGAAGGCAAAATTGTACGAGTGACAGCTGCAGATGCCTTCCTGGACTTGATCAG___GAACATGTTCCCTCCAAATCTGGTAGAAGCCTGCTTTAAACAG___TTTAAAACCAACTATGAGAAGAG TIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLr|nggar* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6725 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 655 TRUE 1169 TRUE 447 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151666361:- chr5:151040657-151066536:- chr5:151045922:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822963:- chr5:151202074-151304412:- chr5:151202524:- chr5:151665203,chr5:151665205 chr5:151825364,chr5:151825364 NA NA chr5:151044764,chr5:151044766 chr5:151204925,chr5:151204925 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Follistatin/Osteonectin-like_EGF_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%),Secreted_protein_acidic_and_rich_in_cysteine_Ca_binding_region(67%)|Neurotransmitter-gated_ion-channel_transmembrane_region(3%) FOLN(100%),Kazal_1(100%),Kazal_2(100%),SPARC_Ca_bdg(35%)|Neur_chan_memb(0%) 24 15 35 2176 91 ENST00000231061.9 ENST00000274576.9 upstream downstream duplicates(27),low_entropy(4),mismatches(3) CAAGAACGTCCTGGTCACCCTGTATGAGAGGGATGAGGACAACAACCTTCTGACTGAGAAGCAGAAGCTGCGG___GTGAAGAAGATCCATGAGAATGAGAAGCGCCTGGAGGCAGGAGACCACCCCGTGGAGCTGCTGGCCCGGGACTTCGAGAAGAACTATAACATGTACATCTTCCCTGTACACTGGCAGTTCGGCCAGCTGGACCAGCACCCCATTGACGG|GAGGATGAAGCTGGAGAAGGCCGCTTTAACTTCTCTGCCTATGGGATGGGCCCAGCCTGTCTACAGGCCAAGGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGAGGGCCAAGAAGATCGACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCATTTTCAACATGTTCTACTGGATCATCTACAAGATTGTCCGTAGAGAGGACGTCCACAACCAG KNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDg|rmklekaaltslpmgwaqpvyrprmasqsrapttvtpptpllhhlspqrrcensssrgprrstkypalaspwpssfstcstgsstrlsvertstt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6726 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 656 TRUE 1169 TRUE 447 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151666361:- chr5:151040657-151066536:- chr5:151045922:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822987:- chr5:151202074-151304412:- chr5:151202548:- chr5:151665203,chr5:151665205 chr5:151825364,chr5:151825364 NA NA chr5:151044764,chr5:151044766 chr5:151204925,chr5:151204925 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Follistatin/Osteonectin-like_EGF_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%),Secreted_protein_acidic_and_rich_in_cysteine_Ca_binding_region(67%)|Neurotransmitter-gated_ion-channel_transmembrane_region(10%) FOLN(100%),Kazal_1(100%),Kazal_2(100%),SPARC_Ca_bdg(35%)|Neur_chan_memb(0%) 5 4 35 2176 21 ENST00000231061.9 ENST00000455880.2 upstream downstream duplicates(17),mismatches(3) CGGGACTGGCTCAAGAACGTCCTGGTCACCCTGTATGAGAGGGATGAGGACAACAACCTTCTGACTGAGAAGCAGAAGCTGCGG___GTGAAGAAGATCCATGAGAATGAGAAGCGCCTGGAGGCAGGAGACCACCCCGTGGAGCTGCTGGCCCGGGACTTCGAGAAGAACTATAACATGTACATCTTCCCTGTACACTGGCAGTTCGGCCAGCTGGACCAGCACCCCATTGACGG|AGCCCCATGTTGAATCTATTCCAGGAGGATGAAGCTGGAGAAGGCCGCTTTAACTTCTCTGCCTATGGGATGGGCCCAGCCTGTCTACAGGCCAAGGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGAGGGCCAAGAAGATCGACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCATT RDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDg|apc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6727 KMT2A::PHLDB1 ENSG00000118058.25::ENSG00000019144.20 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 657 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118493230:+ chr11:118307171-118397547:+ chr11:118363945:+ PHLDB1 ENSG00000019144.20 protein_coding + + chr11:118606440-118658031:+ chr11:118631207:+ chr11:118477155-118528741:+ chr11:118501924:+ chr11:118494341,chr11:118494340 chr11:118628656,chr11:118628652 NA NA chr11:118365056,chr11:118365055 chr11:118499372,chr11:118499368 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none CXXC_zinc_finger_domain(100%),PHD-finger(100%)|PH_domain(100%) ATP-synt_G(100%),AT_hook(100%),PHD(100%),zf-CXXC(100%)|PH(100%) 19 19 6 169 186 ENST00000710560.1 ENST00000361417.6 downstream upstream duplicates(17),mismatches(3) TGTTGAATTCTCGGACTACCAGCCATTTGCTACGCTACCGGCAG___GCTGCCAAGCCTCCAGACTTAAATCCCGAGACAGAGGAGAGTATACCTTCCCGCAGCTCCCCCGAAGGACCTGATCCACCAGTTCTTACTGAGGTCAGCAAACAGGATGATCAGCAGCCTTTAGATCTAGAAGGAGTCAAGAGGAAGATGGACCAAGGGAATTACACATCTGTG|GAACGCCAGCGCCTGGAGACCATCCTGAACCTGTGTGCCGAATACAGCCGGGCTGATGGGGGACCTGAGGCTGGGGAGCTTCCCAGCATTGGGGAGGCCACCGCAGCATTGGCACTGGCAGGCCGGAGGCCCTCACGAGGCCTTGCAGGGGCCTCTGGGCGGAGCAGCGAGGAGCCTGGCGTTGCCACCCAACGCCTATGGGAGAGTATGGAGCGCTCAGATGAG LNSRTTSHLLRYRQAAKPPDLNPETEESIPSRSSPEGPDPPVLTEVSKQDDQQPLDLEGVKRKMDQGNYTSV|ERQRLETILNLCAEYSRADGGPEAGELPSIGEATAALALAGRRPSRGLAGASGRSSEEPGVATQRLWESMERSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6716 chr11:118644000-118644079:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other FALSE NA NA NA NA NA NA NA NA NA 6734 KLHL18::RUNX3 ENSG00000114648.12::ENSG00000020633.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 658 FALSE NA FALSE NA KLHL18 ENSG00000114648.12 protein_coding + + chr3:47282917-47346816:+ chr3:47322708:+ chr3:47324407-47388306:+ chr3:47364198:+ RUNX3 ENSG00000020633.19 protein_coding - - chr1:24899511-24965121:- chr1:24902666:- chr1:25226002-25291612:- chr1:25229157:- chr3:47324267,chr3:47324266 chr1:24904003,chr1:24904004 NA NA chr3:47365757,chr3:47365756 chr1:25230494,chr1:25230495 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BTB/POZ_domain(99%)|Runx_inhibition_domain(100%) BTB(84%),DUF3342(100%)|RunxI(100%) 13 11 19 85 107 ENST00000232766.6 ENST00000338888.4 downstream downstream duplicates(16),mismatches(6),multimappers(1) ACGGCGCGGAGGAGCTGGAGGATCTGGTGCACTTCTCCGTGTCTGAGTTGCCTAGTCGCGGCTACGGCGTCATGGAGGAGATCCGGCGGCAGGGCAAGCTGTGCGACGTGACCCTCAAG___...CACAAATTCAGTGCCCACCGGATTGTCTTAGCAGCCTCGATCCCGTATTTCCATGCTATGTTTACAAATGACATGATGGAGTGCAAGCAGGATGAGATTGTAATGCAAGGAATGGACCCAAG___TGCCCTGGAGGCTCTGATCAACTTTGCCTACAACGGCAACCTTGCCATTGACCAGCAAAATGTCCAGTCATTGCTGATGGGGGCGAGCTTCCTGCAGCTGCAGAGCATCAAAGACGCCTGCTGCACATTCCTTCGAGAACG|GCACCTCGGAACTGAACCCATTCTCCGACCCCCGCCAGTTTGACCGCTCCTTCCCCACGCTGCCAACCCTCACGGAGAGCCGCTTCCCAGACCCCAGGATGCATTATCCCGGGGCCATGTCAGCTGCCTTCCCCTACAGCGCCACGCCCTCGGGCACGAGCATCAGCAGCCTCAGCGTGGCGGGCATGCCGGCCACCAGCCGCTTCCACCATACCTACCTCCCGCCACCCTACCCGGGGGCCCCGCAGAACCAGAGCGGGCCCTTCCAGGCCAACCCGTCCCCCTACCACCTCTACTACGGG HKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLREr|hlgtepilrpppv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6735 RAB11FIP3::DECR2 ENSG00000090565.17::ENSG00000242612.7 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1171 TRUE 448 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471391:+ chr16:475649-573011:+ chr16:521391:+ DECR2 ENSG00000242612.7 protein_coding + + chr16:401858-412487:+ chr16:410211:+ chr16:451858-462487:+ chr16:460211:+ chr16:476868,chr16:476866 chr16:409569,chr16:409567 NA NA chr16:526868,chr16:526866 chr16:459569,chr16:459567 NA NA sense sense in-frame intron CDS/splice-site duplication high none |Enoyl-(Acyl_carrier_protein)_reductase(62%) EF-hand_5(100%)|KR(12%),adh_short(13%),adh_short_C2(19%) 3 13 26 141 108 ENST00000262305.9 ENST00000633348.1 downstream upstream duplicates(10),mismatches(4) ACTTAACTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATGAGGC|TCCAGCAGCTCCTGCGGTCTCCCATTCTGCAGGTGCGGCCGGGAACTTCCTGTGCCCCGCTGGCGCCTTGTCCTTCAACGCCTTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAATGTGTCTCGTGTGCTCTATGAGAAGTTCTTCCGG___GACCACGGAGGGGTGATCGTGAACATCACTGCCACCCTGGGGAACCGGGGGCAGGCGCTCCAGGTGCATGCAGGCTCCGCCAAGGCCGCTGTGG___ACGCGATGACGCGGCACTTGGCTGTGGAGTGGGG...AACAGCCTCGCCCCgGcCCCCATCAGTGGCACAGAGGGGCTCCGGCGACTGG___GAATCTTCCGGCCGCTGCTTCCTGCCGCCTCACTCAGCCAGGTGGAGAG LTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYEa|PAAPAVSHSAGAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6736 RAB11FIP3::DECR2 ENSG00000090565.17::ENSG00000242612.7 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1171 TRUE 448 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471387:+ chr16:475649-573011:+ chr16:521387:+ DECR2 ENSG00000242612.7 protein_coding + + chr16:401858-412487:+ chr16:410241:+ chr16:451858-462487:+ chr16:460241:+ chr16:476868,chr16:476866 chr16:409569,chr16:409567 NA NA chr16:526868,chr16:526866 chr16:459569,chr16:459567 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Enoyl-(Acyl_carrier_protein)_reductase(62%) EF-hand_5(100%)|KR(12%),adh_short(13%),adh_short_C2(19%) 0 3 22 141 230 ENST00000262305.9 ENST00000439661.5 downstream upstream duplicates(5),mismatches(2) GAAGGACTTAACTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATG|AGGTGCGGCCGGGAACTTCCTGTGCCCCGCTGGCGCCTTGTCCTTCAACGCCTTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAATGTGTCTCGTGTGCTCTATGAGAAGTTCTTCCGG___GACCACGGAGGGGTGATCGTGAACATCACTGCCACCCTGGGGAACCGGGGGCAGGCGCTCCAGGTGCATGCAGGCTCCGCCAAGGCCGCT___ACGCGATGACGCGGCACTTGGCTGTGGAGTGGGGTCCCCAAAACATCCGCGTCAACAGCCTCGCCCCTGG KDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTY|evrpgtscaplapcpstpsrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6737 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25219442:- chr6:25061854-25452491:- chr6:25219670:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none YT521-B-like_domain(100%)| YTH(100%)| 5 1 33 397 48 ENST00000542507.5 unknown downstream downstream duplicates(14),mismatches(2) CGTTTTGATGTCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTCGCCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATTATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAG|GATACTTTAACCACTCTTGGGAATTTATGGCCAGGAAGTCTATTCAGCAGACTTCCTAATTGGCAGAGGAAGCACATTTCCATAAAAGAAGAGTTTCTGGAGGAAGCTAGCAGCTCCATTAGTTCTGTTGGAAGACAGTGCACTTGAAAGG RFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK|dtlttlgnlwpgslfsrlpnwqrkhisikeefleeasssissvgrqct* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6738 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25167392:- chr6:25061854-25452491:- chr6:25167620:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none YT521-B-like_domain(100%)| YTH(100%)| 4 9 16 397 35 ENST00000542507.5 ENST00000642554.1 downstream downstream duplicates(9),mismatches(3) CGTTTTGATGTCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTCGCCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATTATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAG|TGCAAATTTTGAGGCACAGAATTCTCCAGGGATTCAGGAGAAAGAGCACTCAGTGGGAAAAGGAGGAATTGATTTTAATGAAGCGGGGAGGACTTAAG___CTTTCTCTGaGGAGCTGCTCTTGTGCTGTTTGGCCCCTGCCTACTCGGAATGGAACAAAG RFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK|ckf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6739 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25166349:- chr6:25061854-25452491:- chr6:25166577:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none YT521-B-like_domain(100%)| YTH(100%)| 5 3 15 397 56 ENST00000542507.5 ENST00000642554.1 downstream downstream duplicates(12),mismatches(3) TCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTCGCCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATTATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAG|CTTTCTCTGaGGAGCTGCTCTTGTGCTGTTTGGCCCCTGCCTACTCGGAATGGAACAAAG___CATCGAACAAACAACTGAGATCCTGTTGTGCCTATCACCTGTTGAAGTTGCCAGTCTTAAGGAAGG RWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK|lslrscscavwplptrngtkhrtnn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6740 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25137823:- chr6:25061854-25452491:- chr6:25138051:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none YT521-B-like_domain(100%)| YTH(100%)| 5 0 10 397 78 ENST00000542507.5 ENST00000643807.1 downstream downstream duplicates(6),mismatches(1) TCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGCGACACATTCGCCTAGAGAACAACGAGAATAAACCAGTGACCAACTCTAGGGACACTCAGGAAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATTATAGCCAGCTACAAGCACACCACTTCCATTTTTGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAAAGTGTTAAAAAG|CATCGAACAAACAACTGAGATCCTGTTGTGCCTATCACCTGTTGAAGTTGCCAGTCTTAAGGAAGGAATCAATTTCTTTCGCAATAAGAGCACTGGCAAAGACTACGTCTTGTACAAGAATAAGAGCCGACTGAGGGCATGCAAGAATATGTGCAAGCACCAAGGAGGCCTGTTCATAAAAGATATCGAGGATTTAGCCGGAAG___TTGTTGAAATGGATGAAAACAACGGACTTTTGCTTTTAGAACTGAATCCTCCTAACCCTTGGGACTTACAGCCCAGAT RWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQEEEESVKK|hrtnn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6741 PACSIN1::SRSF3 ENSG00000124507.11::ENSG00000112081.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 659 TRUE 1173 TRUE 450 PACSIN1 ENSG00000124507.11 protein_coding + + chr6:34466061-34535229:+ chr6:34466270:+ chr6:34433838-34503006:+ chr6:34434047:+ SRSF3 ENSG00000112081.17 protein_coding + + chr6:36594353-36605600:+ chr6:36598849:+ chr6:36562130-36573377:+ chr6:36566626:+ chr6:34497870,chr6:34497869 chr6:36598457,chr6:36598453 NA NA chr6:34465647,chr6:34465646 chr6:36566234,chr6:36566230 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(11%) |RRM_1(1%),RRM_5(2%) 14 12 6 67 2505 ENST00000620693.4 ENST00000373715.11 downstream upstream duplicates(7),mismatches(1) GCGAGATCCCAGAGCGACGCGGTGGCGGCGGCAGCGCCAGCCCCCTCCTCCCCCGGGAAGTCGGCCGGGCTTGAGGCCGGGCCCCAGACGTCCCGCTTCGCCCCGAGgCGCCGCCGATGGTCCCCGGAGCTCCTGCCCCCAG|AACACTATGTGGCTGCCGTGTAAGAGTGGAACTGTCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAGGAGTCCTCCACCTCGTCGCAG___ATCTCCAAGAAGGAGAAGCTTCTCTCGCAGCCGGAGCAG___GTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCGCTGTCTCGGGAGAGAAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAG___TCGATCTAGGTCAAATGAAAGGAAATAGAAGACAGTTTGCAAGAGAAGTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/arginine-rich splicing factor 3 1 follicular lymphoma leukaemia_lymphoma oncogene, fusion translocation 6742 PACSIN1::SRSF3 ENSG00000124507.11::ENSG00000112081.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1173 TRUE 450 PACSIN1 ENSG00000124507.11 protein_coding + + chr6:34466061-34535229:+ chr6:34466270:+ chr6:34433838-34503006:+ chr6:34434047:+ SRSF3 ENSG00000112081.17 protein_coding + + chr6:36594353-36605600:+ chr6:36601152:+ chr6:36562130-36573377:+ chr6:36568929:+ chr6:34497870,chr6:34497869 chr6:36598457,chr6:36598453 NA NA chr6:34465647,chr6:34465646 chr6:36566234,chr6:36566230 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none none 0 1 5 67 1906 ENST00000620693.4 ENST00000373715.11 downstream upstream duplicates(2) CCCGGCGAGATCCCAGAGCGACGCGGTGGCGGCGGCAGCGCCAGCCCCCTCCTCCCCCGGGAAGTCGGCCGGGCTTGAGGCCGGGCCCCAGACGTCCCGCTTCGCCCCGAGgCGCCGCCGATGGTCCCCGGAGCTCCTGCCCCCAG|ATCTCCAAGAAGGAGAAGCTTCTCTCGCAGCCGGAGCAG___GTCCCTTTCTAGAGATAGGAGAAGAGAGAGATCGCTGTCTCGGGAGAGAAATCACAAGCCGTCCCGA...ATTCAAGTTTTGTTTGAGACTTCATAAGCTTGGTGCATTTTTAAGATGTTTTAGCTGTTCAAATCTGTTTGTCTCTTGAAACAGTGACACAAAGGTGTAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/arginine-rich splicing factor 3 1 follicular lymphoma leukaemia_lymphoma oncogene, fusion translocation 6743 FBXO22::UBE2Q2 ENSG00000167196.14::ENSG00000140367.12 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 660 TRUE 1174 TRUE 451 FBXO22 ENSG00000167196.14 protein_coding + + chr15:75903876-75942511:+ chr15:75917394:+ chr15:76196217-76234852:+ chr15:76209735:+ UBE2Q2 ENSG00000140367.12 protein_coding + + chr15:75843307-75901078:+ chr15:75896995:+ chr15:76135648-76193419:+ chr15:76189336:+ chr15:75924159,chr15:75924160 chr15:75891541,chr15:75891539 NA NA chr15:76216500,chr15:76216501 chr15:76183882,chr15:76183880 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none F-box_domain(100%)|Ubiquitin-conjugating_enzyme(17%) F-box(100%),F-box-like(100%)|UQ_con(0%) 8 13 10 350 496 ENST00000308275.8 ENST00000569423.5 downstream upstream duplicates(13),mismatches(8) AGGAGCTTGAG___...CAGAAACTTTCATTAGTCTGGAA...AAAGAACTAGTATGGAAACAGCACTTGCCCTTGAGAAGCTATTCCCCAAACAATGCCAAGTCCTTGGGATTGTGACCCCAGGAATTGTAG___TGACTCCAATGGGATCAGGTAGCAATCGACCTCAGGAAATAGAAATTGGAGAATCTGGTTTTGCTTTATTATTCCCTCAAATTGAAGGAATAAAAATACAACCCTTTCATTTTATTAAGGATCCAAAGAATTTAACATTAGAAAGACATCAACTCACTGAAGTAG|AATCAATATAATCTAGCAAGAGCCCAACAATCCTATAATTCCATTGTACAGATACATGAGAAAAATG___GCTGGTACACCCCTCCAAAGGAAGATGGCTAAATaTGTTGACTGTTGTATGTTTGGACTAATGTTGCTTTAAAGAAAATCTTTCcAACATGCAGACAAAAGCTTTGAGTGCCCCTATTACAGCAGTACCGAAGATGTTAGTTAATAGATATTTTAGTGGA RTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKNLTLERHQLTEV|esi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6744 FBXO22::UBE2Q2 ENSG00000167196.14::ENSG00000140367.12 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1174 TRUE 451 FBXO22 ENSG00000167196.14 protein_coding + + chr15:75903876-75942511:+ chr15:75917394:+ chr15:76196217-76234852:+ chr15:76209735:+ UBE2Q2 ENSG00000140367.12 protein_coding + + chr15:75843307-75901078:+ chr15:75899427:+ chr15:76135648-76193419:+ chr15:76191768:+ chr15:75924159,chr15:75924160 chr15:75891541,chr15:75891539 NA NA chr15:76216500,chr15:76216501 chr15:76183882,chr15:76183880 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none F-box_domain(100%)| F-box(100%),F-box-like(100%)| 2 0 7 350 508 ENST00000308275.8 ENST00000569423.5 downstream upstream duplicates(5),mismatches(2) CCGCGGAGCACCTTCGTGTTGAGTAACCTGGCGGAGGTGGTGGAGCGTGTGCTCACCTTCCTGCCCGCCAAGGCGTTGCTGCGGGTGGCCTG___AATGTTCGC...AAGCTATTCCCCAAACAATGCCAAGTCCTTGGGATTGTGACCCCAGGAATTGTAG___TGACTCCAATGGGATCAGGTAGCAATCGACCTCAGGAAATAGAAATTGGAGAATCTGGTTTTGCTTTATTATTCCCTCAAATTGAAGGAATAAAAATACAACCCTTTCATTTTATTAAGGATCCAAAGAATTTAACATTAGAAAGACATCAACTCACTGAAGTAG|GCTGGTACACCCCTCCAAAGGAAGATGGCTAAATaTGTTGACTGTTGTATGTTTGGACTAATGTTGCTTTAAAGAAAATCTTTCcAACATGCAGACAAAAGCTTTGAGTGCCCCTATTACAGCAGTACCGAAGATGTTAGTTAATAGATATTTTAGTGGATAATCTGTCATCTGACATCCAGTATAAGTTACAGCCTTcGCATTTTGCTCATTTTAGATATCTTGGACTGAGCAGcGGGG KLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKNLTLERHQLTEV|gWYTPPKEDG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6757 SPC24::DOCK6 ENSG00000161888.12::ENSG00000130158.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 663 TRUE 1176 TRUE 452 SPC24 ENSG00000161888.12 protein_coding - - chr19:11131520-11155807:- chr19:11147870:- chr19:11242196-11266483:- chr19:11258546:- DOCK6 ENSG00000130158.14 protein_coding - - chr19:11199295-11262524:- chr19:11204331:- chr19:11309971-11373200:- chr19:11315007:- chr19:11147541,chr19:11147634,chr19:11147638 chr19:11205724,chr19:11205788,chr19:11205789 NA NA chr19:11258217,chr19:11258310,chr19:11258314 chr19:11316400,chr19:11316464,chr19:11316465 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Spc24_subunit_of_Ndc80(57%)|DHR-2__Lobe_A(60%) Spc24(65%)|DHR-2(30%) 2 4 11 131 62 ENST00000585567.5 ENST00000294618.12 upstream downstream duplicates(3),low_entropy(1) GGACACCCGTCTGAAGGCCAGCCTCCT___TCAGCTCACCAGAGAGCTGGAAGAGCTCAAGGAGATTGAGGCGGATCTGGAGCGACAGGAGAAGGAGGTCGACGAGGACACGACAGTCACAATCCCCTCGGCCGT___GTACGTGGCTCAACTTTACCACCAA|GGCGGGCTCTACGAGGCGGTGAATGAGGTCTACAAGAACCTCATCCCCATCCTGGAAGCCCACCGTGACTACAAGAAGCTGGCCGCGGTGCACGGCAAACTGCAGGAGGCCTTCACCAAGATCATGCACCAG___AGTTCCGGCTGGGAG___CGCGTGTTCGGGACGTATTTCCGCGTGGGCTTCTACGGCGCCCACTTCGGTGACCTGGATGAGCAGGAGTTTGTGTACAAGGAGCCATCGATCACGAAGCTGGCAGAGATCTCACACCGGCTGGAG___GAGTTCTACACGGAGAG DTRLKASLLQLTRELEELKEIEADLERQEKEVDEDTTVTIPSAVYVAQLYHQ|GGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGAHFGDLDEQEFVYKEPSITKLAEISHRLEEFYTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6758 SPC24::DOCK6 ENSG00000161888.12::ENSG00000130158.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1176 TRUE 452 SPC24 ENSG00000161888.12 protein_coding - - chr19:11131520-11155807:- chr19:11148013:- chr19:11242196-11266483:- chr19:11258689:- DOCK6 ENSG00000130158.14 protein_coding - - chr19:11199295-11262524:- chr19:11204331:- chr19:11309971-11373200:- chr19:11315007:- chr19:11147541,chr19:11147634,chr19:11147638 chr19:11205724,chr19:11205788,chr19:11205789 NA NA chr19:11258217,chr19:11258310,chr19:11258314 chr19:11316400,chr19:11316464,chr19:11316465 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Spc24_subunit_of_Ndc80(49%)|DHR-2__Lobe_A(60%) Spc24(58%)|DHR-2(30%) 0 2 7 184 62 ENST00000585567.5 ENST00000294618.12 upstream downstream duplicates(1) GGCGTGGAGCTGCAGCAGCTGGAAGCTGGGCTTCAGGAGGCTGGGGAGGAGGACACCCGTCTGAAGGCCAGCCTCCT___TCAGCTCACCAGAGAGCTGGAAGAGCTCAAGGAGATTGAGGCGGATCTGGAGCGACAGGAGAAGGAGGTCGACGAGGACACGACAGTCACAATCCCCTCGGCCGT|GGCGGGCTCTACGAGGCGGTGAATGAGGTCTACAAGAACCTCATCCCCATCCTGGAAGCCCACCGTGACTACAAGAAGCTGGCCGCGGTGCACGGCAAACTGCAGGAGGCCTTCACCAAGATCATGCACCAG___AGTTCCGGCTGGGAG___CGCGTGTTCGGGACGTATTTCCGCGTGGGCTTCTACGGCGCCCACTTCGGTGACCTGGATGAGCAGGA GVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLERQEKEVDEDTTVTIPSAv|agstrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6759 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45118564:+ chr21:46493768-46646475:+ chr21:46538479:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 3 2 9 107 12 ENST00000262367.10 ENST00000449478.2 upstream upstream duplicates(6),mismatches(2) CACAGACTGGACCTGGTATCTGCATGAATGCTAACTTTAACCAGACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|AGTCTAGTGTTGtTAATGAGAAGTTGGATATCCGTTTGATCCTTGTTCTACTGCAG___GTAGTGTATATTTTGAGAACAGCGTG...GCTGTTCAGTGCGTTGATCGATTCTCACATCTGAAGCCAGCTGTGTATTCTTG___AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTACTTCAGTCCTGCTGAGATACTCTCTCAGTCCGCTCGCACCGAAGGAAG QTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|slvllmrswisv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6760 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45116933:+ chr21:46493768-46646475:+ chr21:46536848:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 1 1 9 107 4 ENST00000262367.10 ENST00000348831.9 upstream upstream duplicates(3),mismatches(2) CACAGACTGGACCTGGTATCTGCATGAATGCTAACTTTAACCAGACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|CATAATTGATATACTGTGGTTACTCTACCTATTTGTGTAGGCCTCTCAGGTCATTGAAACAAG...GCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTACTTCAGTCCTGCTGAGATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGG QTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|hn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6761 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45120794:+ chr21:46493768-46646475:+ chr21:46540709:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 2 0 7 107 25 ENST00000262367.10 ENST00000449478.2 upstream upstream duplicates(4),mismatches(2) GGCCAGCCTCAGTGCCATGGGCAAGAGCCCTCTGAGCCAGGGAGATTCTTCAGCCCCCAGCCTGCCTAAACAGGCAGCCAGCACCTCTGGGCCCACCCCCG...CTTTAACCAGACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|GTAGTGTATATTTTGAGAACAGCGTGAGGTTTATTCTACTAATGGAAATTTACAAAAATACCAGTTTGAATGATTGAGAAATCTAAGTTAAAGAACCCTTGAATAGAAATGTCGCTGTTCAGTGCGTTG FNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|vvyilrta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6762 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 1 1 6 107 60 ENST00000262367.10 ENST00000348831.9 upstream upstream duplicates(1),mismatches(1) CTTTAACCAGACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTACTTCAGTCCTGCTGAGATACTCTCTCAGTCCGCTCGCACCGAAGGAAGCTGCCTTGGGATCAGAGCAGACATAAAGCTAGAAAAATTTCAAG___ACAGAAACAGTCTCCGCCAGTCAAGAAACCCTCAAAAGTATTTTGCCATGGATATAGAAGATGAA FNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|sgafqagmeslrgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6763 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3879832:- chr16:3775055-3930714:- chr16:3929833:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none |Adenosine-deaminase_(editase)_domain(100%),Double-stranded_RNA_binding_motif(100%) |A_deamin(100%),dsrm(100%) 0 1 0 62 60 ENST00000262367.10 ENST00000348831.9 upstream upstream none GCCAAACTCAGCTCGCCCGGTTTCTCGGCGAATGACAGCACAG|AGTGGAGCCTTTCAGGCTGGCATGGAGAGCTTAAGGGGCAACTGAAGGAGACACACTGGCCAAGCGCGGAGTTCTGCTTACTTCAGTC AKLSSPGFSANDST|ewslsgwhgelkgqlkethwpsaefcllq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6766 NUBP2::EME2 ENSG00000095906.17::ENSG00000197774.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUBP2 ENSG00000095906.17 protein_coding + + chr16:1782932-1789186:+ chr16:1786655:+ chr16:1832933-1839187:+ chr16:1836656:+ EME2 ENSG00000197774.14 protein_coding + + chr16:1772810-1781708:+ chr16:1779985:+ chr16:1822811-1831709:+ chr16:1829986:+ chr16:1787291,chr16:1787291,chr16:1787292 chr16:1779091,chr16:1779092,chr16:1779089 NA NA chr16:1837292,chr16:1837292,chr16:1837293 chr16:1829092,chr16:1829093,chr16:1829090 NA NA sense sense out-of-frame CDS/splice-site 3'UTR duplication high none NUBPL_iron-transfer_P-loop_NTPase(13%)| AAA_31(42%),ArsA_ATPase(41%),CbiA(7%),MipZ(7%),ParA(4%)| 2 2 7 225 49 ENST00000568834.5 ENST00000568449.7 downstream upstream duplicates(1) CGGACTGCAGCCGCGAGCTCCTGGAGGCGGCGGGATGGAGGCGGCGGCCG___AGCCTGGAAACCTGGCCGGCGTCAGGCACATCATCCTGGTCCTCTCAGGAAAGGGGGGCGTTGGGAAAAGCACCATCTCCACGGAGCTGGCCCTGGCACTGCGCCATGCAGGCAAGAAG|GCCTAATGGACCCACCGGGCTTAGGGAGTCCTCACTCAGAGGAGAGGAGCCCACCCCTCCCAGGACACCTGGCTGAGCCGGAACAGCAGCGCAGGGGAGCTGTGACAGCAGAGAGCAGCACCAGGTCACACAAGCAGCCGCCCCGGAAGGACACGGCCCATGGTGACAGAGGACAAGCAGCATGCGTGTGTCAGACACTGGCCTGGCCTGTGGACACGCCCG...CAAAGCCCACAAGCATGTCAGATCACCTGGGCTGCAGACAGACAAACACCTGAGCTGTTCTGAATACCTTCAGGTTCCTGGCCTCCCTGAGCAAGTGCAG MEAAAEPGNLAGVRHIILVLSGKGGVGKSTISTELALALRHAGKK|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6767 SAE1::ARHGAP35 ENSG00000142230.13::ENSG00000160007.20 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1178 FALSE NA SAE1 ENSG00000142230.13 protein_coding + + chr19:47113274-47210636:+ chr19:47155213:+ chr19:47616531-47713893:+ chr19:47658470:+ ARHGAP35 ENSG00000160007.20 protein_coding + + chr19:46860997-47005077:+ chr19:46918488:+ chr19:47364254-47508334:+ chr19:47421745:+ chr19:47156798,chr19:47157149,chr19:47156792 chr19:46874342,chr19:46874527,chr19:46874333 NA NA chr19:47660055,chr19:47660406,chr19:47660049 chr19:47377599,chr19:47377784,chr19:47377590 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none ThiF_family(60%)|FF_domain(100%),Ras_family(100%),RhoGAP_domain(100%),p190-A_and_-B_Rho_GAPs_FF_domain(100%) ThiF(30%)|FF(100%),Ras(100%),RhoGAP(100%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(100%) 4 2 5 942 38 ENST00000413379.7 ENST00000672722.1 downstream upstream duplicates(5) ATCTCATCTTGGCAGGAGTGAAAGGACTGACCATGCTGGATCACGAACAG___GTAACTCCAGAAGATCCCGGAGCTCAGTTCTTGATTCGTACTGGGTCTGTT...GTTAAAGTTGACCAGATCTGTCACAAAAATAGCATCAAGTTCTTTACAGGAGATGTTTTTGGCTACCATGGATACACATTTGCCAATCTAGGAGAGCATGAGTTTGTAGA___GGAGAAAACTAAAGTTGCCAAAGTTAGCCAAGGAGTAGAAGATGGGCCCGACACCAAGAGAGCAAAACTTGATTCTTCTGAGACAACGATGGTCAAAAAG|GAAGAAATGTTGGCTATTTGGCGATGAGAGGTGGTGAACAGTGACCATACTGGTATACAACACTATGGGACCTGGCATTTTTGCTGCATGTCCAGCCCACCCCCACTAATAATGTAGGAAGCTGTCTGGTCCATTGGAAACACTAATCTGATCTCAGAAGTGGCTGATCGTGGCAGGATGTGTCGACGATGATGATGGCAAGAAAGCAAG...TATCTGGGACCGAGAAGGAAAAGGGCCAGTGTGGGATTGGAAAGTCTTGTTTGTGCAACCGCTTCGTGCGCCCGAGTGCTGACGAGTTTCACTTGGACC VKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKK|eemlaiwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 47673180 FALSE 47491246 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 35 1 Yes endometrial carcinoma epithelial TSG nonsense, missense, frameshift, other 6774 MTIF2::CCDC88A ENSG00000085760.15::ENSG00000115355.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 665 FALSE NA FALSE NA MTIF2 ENSG00000085760.15 protein_coding - - chr2:55236595-55269347:- chr2:55240011:- chr2:55463731-55496483:- chr2:55467147:- CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55309254:- chr2:55514978-55647031:- chr2:55536390:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Elongation_factor_Tu_GTP_binding_domain(100%),Translation-initiation_factor_2(100%)| GTP_EFTU(100%),IF-2(100%),MMR_HSR1(100%),Ras(100%)| 5 3 1 222 112 ENST00000403721.5 ENST00000642200.1 upstream downstream duplicates(2) ATCTACTGTGGAAGAAGAGATCAATTCTACGGTTTTTAGAAAGAAAAGAACAAATACCCTTAAAGCCAAAAGAGAAAAGGGAAAGAGATTCAAATGTACTTTCTGTGATTATTAAAG___GTGATGTTGATGGTTCTGTTGAGGCCATTTTGAACATTATAGATACCTATGATGCTTCACACGAGTGTGAACTAGAATTAGTACATTTTGGAGTGGGTGATaTAAGTGCAAATGATGTTAACCTTGCTGAAACATTTGATG___GTGTTATATATGGCTTTAATGTGAATGCAGGCAATGTTATCCAACAGTCAGCTGCAAAAAAAGGAGTAAAAATTAAACTTCACAAAATAATTTACCGTCTTGTTGAAGATTTGCAAGAGGAACTGAGCAGCAGATTACCCTGTGCTGTGGAAGAGCACCCAGTAG|TGATAAGTTAAATGAATTAAGACGTCAGAAGGAGAAACTAGAAGAGAAAATTATGGATCAATACAAATTTTATGACCCATCTCCTCCTAGAAG___GAGAGGCAACTGGATTACTCTAAAAATGAGAAAATTGATAAAGTCTAAGAAAGAT...TAATCGGGAACGCCAGAAATCTCTAACATTAACACCCACCCGCTCAGACTCCAGTGAAGGATTTCTTCAGCTCCCTCATCAAGACAGTCAAGATAGTTCTT...CAAGAAAAGCAGCA___TGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCGAAGGATAAAGACAAAATGAAGGCCTGCTACCGTCGTTCCATGT___CCA LLWKKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDASHECELELVHFGVGDiSANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIYRLVEDLQEELSSRLPCAVEEHPV|vis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6775 PKN1::LINC01841 ENSG00000123143.13::ENSG00000266913.1 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PKN1 ENSG00000123143.13 protein_coding + + chr19:14433053-14471867:+ chr19:14446561:+ chr19:14543865-14582679:+ chr19:14557373:+ LINC01841 ENSG00000266913.1 lncRNA - + chr19:14305458-14370196:- chr19:14319594:+ chr19:14416270-14481008:- chr19:14430406:+ chr19:14447250,chr19:14447249 chr19:14307262,chr19:14307258 NA NA chr19:14558062,chr19:14558061 chr19:14418074,chr19:14418070 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Hr1_repeat(65%)| HR1(85%)| 1 1 6 752 9 ENST00000242783.11 unknown downstream upstream duplicates(2),mismappers(4),mismatches(2) TGAGCCGCGTGGCGGGCCTGGAGAAGCAGTTGGCCATTGAGCTGAAGGTGAAGCAGGGGGCGGAGAACATGATCCAGACCTACAGCAATGGCAGCACCAAG___GACCGGAAGCTGCTGCTGACAGCCCAGCAGATGTTGCAGGACAGTAAGACCAAGATTGACATCATCCGCATGCAACTCCGCCGGGCGCTGCAGGCCGGCCAGCTGGAGAACCAGGCAGCCCCGGATGACACCCAAG|GCTGAAGTGCAATGGCGCAATCTTGGCTCACCTCAACCTTTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCCCCAGAGTAGCTGGGATTACAGGCACACGCCACCACACCCGGCTAATTTTGTATTTTTAGTAGAGTCAGGGTTTCTCCATGTTGGTAAGTCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCAGTCTCGGCCTaCCAAAATGCTGGGATTACAGGTGTG SRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQAGQLENQAAPDDTQ|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase N1 AGC PKN Q16512 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6777 FKTN::SLC44A1 ENSG00000106692.15::ENSG00000070214.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1180 TRUE 454 FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105558595:+ chr9:108320403-108416101:+ chr9:108320876:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105335563:+ chr9:108006903-108201452:+ chr9:108097844:+ chr9:105568519,chr9:105568519,chr9:105568516 chr9:105315969,chr9:105315981,chr9:105315963 NA NA chr9:108330800,chr9:108330800,chr9:108330797 chr9:108078250,chr9:108078262,chr9:108078244 NA NA sense sense unknown 5'UTR CDS/splice-site duplication high none |Plasma-membrane_choline_transporter(100%) |Choline_transpo(100%) 2 2 2 2 390 ENST00000675736.1 ENST00000374724.1 downstream upstream duplicates(1) ATGAAAGGTTGGAGGACGATCGAGACTCTTGTAGTAGCCGGGTTAGGGTAGTGACCCCTGACCTCAGGTTATCCGCCCGCGTTGGCCTCTCAAAGTGCTGAGATTACAGCCGTGAGCCACCGCGCCCGGCCTGAAATTTACAATTTCTCATTTAACATGAG|GTATGTATTCTTTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGTGATGTTCAGAAGTTTGCAGAGATAAATG___GTTCAGCCCTATGTAGCTACtAC...TATCACTAG___TTCTATCCATGATTTTGATGGTGATAATCAGGTATATATCAAGAGTACTTGTGTGGATCTTAACGATTCTGGTCATACTCGGTTCACTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6778 FKTN::SLC44A1 ENSG00000106692.15::ENSG00000070214.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1180 TRUE 454 FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105559109:+ chr9:108320403-108416101:+ chr9:108321390:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105335563:+ chr9:108006903-108201452:+ chr9:108097844:+ chr9:105568519,chr9:105568519,chr9:105568516 chr9:105315969,chr9:105315981,chr9:105315963 NA NA chr9:108330800,chr9:108330800,chr9:108330797 chr9:108078250,chr9:108078262,chr9:108078244 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Plasma-membrane_choline_transporter(100%) |Choline_transpo(100%) 1 1 2 5 390 ENST00000675736.1 ENST00000374724.1 downstream upstream duplicates(3) GGTGAAAGAACTCTTAGTGGAAAGGAAGTGCAGGGTGTTCTGACAAGGAAGAAGAAAGGAACCGGGGAAATGCCGAAAGAACAATACGCAGGACTTGATTTCTTGGATCTGGGTGATGATATTTTTAACCTGCGTTTCTAAAAA|GTATGTATTCTTTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGTGATGTTCAGAAGTTTGCAGAGATAAATG___GTTCAGCCCTATGTAGCTACAACCTAAAGCCTTCTGAATACACTACATCTCCAAAATCTTCTGTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6779 FKTN::SLC44A1 ENSG00000106692.15::ENSG00000070214.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 666 TRUE 1180 TRUE 454 FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105558165:+ chr9:108320403-108416101:+ chr9:108320446:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105335563:+ chr9:108006903-108201452:+ chr9:108097844:+ chr9:105568519,chr9:105568519,chr9:105568516 chr9:105315969,chr9:105315981,chr9:105315963 NA NA chr9:108330800,chr9:108330800,chr9:108330797 chr9:108078250,chr9:108078262,chr9:108078244 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Plasma-membrane_choline_transporter(100%) |Choline_transpo(100%) 0 8 0 10 390 ENST00000223528.6 ENST00000374724.1 downstream upstream duplicates(2),mismatches(1) CGGAGCGGCTGCAGCCTGCTGTTGAGTGAG|GTATGTATTCTTTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTGTCCAAGGCAAGAACTGAAAACTCTGAGTGATGTTCAGAAGTTTGCAGAGATAAATG___GTTCAGCCCTATGTAGCTACAACCTAAAGCCTTCTGAATACACTACATCTCCAAAATCTTCTGTTCTCTGCCCCAAACTACCAGTTCCAGCGAG___TGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCC...TTGTCAGTGACAATAGTGTCTTACACAGGCTGATTAGTGGAGTAATGACCAGCAAAGAAATTATATTGGGACTTTGCTTGTTATCACTAG___TTCTATCCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6780 FKTN::SLC44A1 ENSG00000106692.15::ENSG00000070214.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1180 TRUE 454 FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105558165:+ chr9:108320403-108416101:+ chr9:108320446:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105348358:+ chr9:108006903-108201452:+ chr9:108110639:+ chr9:105568519,chr9:105568519,chr9:105568516 chr9:105315969,chr9:105315981,chr9:105315963 NA NA chr9:108330800,chr9:108330800,chr9:108330797 chr9:108078250,chr9:108078262,chr9:108078244 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Plasma-membrane_choline_transporter(100%) |Choline_transpo(100%) 0 2 0 10 405 ENST00000223528.6 ENST00000374724.1 downstream upstream duplicates(1) CGGAGCGGCTGCAGCCTGCTGTTGAGTGAG|GTTCAGCCCTATGTAGCTACAACCTAAAGCCTTCTGAATACACTACATCTCCAAAATCTTCTGTTCTCTGCCCCAAACTACCAGTTCCAGCGAG___TGCACCTATTCCATTCTTCCATCGCTGTGCTCCTGTGAACATTTCCTGCTATGCCAAGTTTGCAGAGGCCCTGATCACCTTTGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6781 PLEKHA6::PIK3C2B ENSG00000143850.16::ENSG00000133056.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1181 TRUE 455 PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204367799:- chr1:204187981-204346793:- chr1:204336927:- PIK3C2B ENSG00000133056.14 protein_coding - - chr1:204422628-204494805:- chr1:204440321:- chr1:204391756-204463933:- chr1:204409449:- chr1:204361027,chr1:204361044 chr1:204440678,chr1:204440693 NA NA chr1:204330155,chr1:204330172 chr1:204409806,chr1:204409821 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |C2_domain(100%),PX_domain(100%),Phosphatidylinositol_3-_and_4-kinase(97%) |C2(100%),PI3_PI4_kinase(85%),PX(100%) 4 1 1 24 35 ENST00000564627.2 ENST00000684373.1 upstream downstream duplicates(5),low_entropy(1) GGCCGGCCAGGGTTAAGCGCTTGCCTGCTCCCTGCCGCCCGGCTTGAGGCCAGCGCGTCTTCAGTGGGGAGGCCAGCCACACgGCCAGGGACCCGGGAGCG...TGACTGGCTGGACCTGCCCGGCCGGTGGGCCTACGGAGTTGACGGCGGTGGGAGAATCTTCTTCATCAA___TGATGAGGAAAAGTCAACCAGCTGGGTGCACCCTGGAACAAAGTCACCCATCCAGAGTGGACACACCTCCTGCCCAG___GTTTGCCCAAGGGCTGGGAAGTGGATTCCACCCAGGAAGGAGCTGTGTATTTCATCAA|TGTGGGGACGACCTTCGCCAGGACATGCTAACGCTGCAGATGATTCGCATCATGAGCAAGATCTGGGTCCAGGAGGGGCTGGACATGCGCATGGTCATCTTCCGCTGCTTCTCCACCGGCC DWLDLPGRWAYGVDGGGRIFFINDEEKSTSWVHPGTKSPIQSGHTSCPGLPKGWEVDSTQEGAVYFIn|vgttfartc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6782 PLEKHA6::PIK3C2B ENSG00000143850.16::ENSG00000133056.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1181 TRUE 455 PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204371530:- chr1:204187981-204346793:- chr1:204340658:- PIK3C2B ENSG00000133056.14 protein_coding - - chr1:204422628-204494805:- chr1:204440321:- chr1:204391756-204463933:- chr1:204409449:- chr1:204361027,chr1:204361044 chr1:204440678,chr1:204440693 NA NA chr1:204330155,chr1:204330172 chr1:204409806,chr1:204409821 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |C2_domain(100%),PX_domain(100%),Phosphatidylinositol_3-_and_4-kinase(97%) |C2(100%),PI3_PI4_kinase(85%),PX(100%) 0 1 0 25 35 ENST00000564627.2 ENST00000684373.1 upstream downstream duplicates(2) AAAAGTCAACCAGCTGGGTGCACCCTGGAACAAAGTCACCCATCCAGAGTGGACACACCTCCTGCCCAG|TGTGGGGACGACCTTCGCCAGGACATGCTAAC...GGACGAGTATGAGAAG___GCTGTGGAGAACTTTATCTcCTCCTGCGCTGGCTGCTGCGTGGCCACGTACGTCTTGGGCATCTGTGACCGACATAATGACAAC KSTSWVHPGTKSPIQSGHTSCP|vwgrpspgha NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6783 CMSS1::ADGRG7 ENSG00000184220.12::ENSG00000144820.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CMSS1 ENSG00000184220.12 protein_coding + + chr3:99817837-100181732:+ chr3:99818043:+ chr3:99536681-99900576:+ chr3:99536887:+ ADGRG7 ENSG00000144820.8 protein_coding + + chr3:100609601-100695479:+ chr3:100668949:+ chr3:100328445-100414323:+ chr3:100387793:+ chr3:99927666,chr3:99927667 chr3:100666920,chr3:100666918 NA NA chr3:99646510,chr3:99646511 chr3:100385764,chr3:100385762 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |7_transmembrane_receptor_(Secretin_family)(19%) |7tm_2(57%) 2 1 2 455 11 ENST00000421999.8 ENST00000273352.8 downstream upstream duplicates(5),low_entropy(1) TCCGCGTGTAGCTACGCCGGCCGCCTGGCTTTGAGACAACGTGATTCTCCGCAGCTGGTCGCCTACCCGTGATGTTCTGCCCACGTCGAGACCTGAGCTGAAATGGCAGACGATCTCGGAGACGAGTGGTGGGAGAACCAGCCGACTGGAGCAGGCAGCAGCCCAG|CACAAAAAAAGTTTCATCCATGAAGAAGATTGTTAGCACATTATCTGTTGCAGTTGTTTTTGGAATTACCTGGATTCTAGCATACCTGATGCTAGTTAATGATGATAGCATCAGGATCGTCTTCAGCTACATATTCTGCCTTTTCAACACTACACAG MADDLGDEWWENQPTGAGSSP|aqkkfhp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6784 ADGRG7::CMSS1 ENSG00000144820.8::ENSG00000184220.12 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADGRG7 ENSG00000144820.8 protein_coding + + chr3:100609601-100695479:+ chr3:100669105:+ chr3:100328445-100414323:+ chr3:100387949:+ CMSS1 ENSG00000184220.12 protein_coding + + chr3:99817837-100181732:+ chr3:100146973:+ chr3:99536681-99900576:+ chr3:99865817:+ chr3:100680602,chr3:100680599 chr3:99918322,chr3:99918316 NA NA chr3:100399446,chr3:100399443 chr3:99637166,chr3:99637160 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none 7_transmembrane_receptor_(Secretin_family)(98%),GPCR_proteolysis_site__GPS__motif_(100%)|U3-containing_90S_pre-ribosomal_complex_subunit(100%) 7tm_2(43%),GPS(100%)|CMS1(100%),DEAD(100%) 2 1 2 10 462 ENST00000273352.8 ENST00000421999.8 downstream upstream duplicates(3) CCcAGCACAAAAAAAGTTTCATCCATGAAGAAGATTGTTAGCACATTATCTGTTGCAGTTGTTTTTGGAATTACCTGGATTCTAGCATACCTGATGCTAGTTAATGATGATAGCATCAGGATCGTCTTCAGCTACATATTCTGCCTTTTCAACACTACACAG|AAGCATCAGATGGTGAAGGAGAAGGAGACACAGAAGTGATGCAGCAGGAGACAGTTCCAGTTCCTGTACCTTCAGAGAAAACCAAACAG___CCTAAAGAATGTTTTTTGATACAACCAAAGGAAAGAAAAGAGAATACCACCAAG...ATGTTCTTGCAAAATCAGAACCAAAACCAGGGTTACCTGAgGACCTACAGAAGCTGATGAAGGACTATTATAGCAGCAGACGCTTGGTGATTGAATTAGAA pSTKKVSSMKKIVSTLSVAVVFGITWILAYLMLVNDDSIRIVFSYIFCLFNTTQ|khqmvkeketqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6785 UST::SASH1 ENSG00000111962.8::ENSG00000111961.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UST ENSG00000111962.8 protein_coding + + chr6:148747030-149076990:+ chr6:148747677:+ chr6:149068166-149398126:+ chr6:149068813:+ SASH1 ENSG00000111961.19 protein_coding + + chr6:148272304-148552044:+ chr6:148514324:+ chr6:148593440-148873180:+ chr6:148835460:+ chr6:148801979,chr6:148801975 chr6:148494859,chr6:148494843 NA NA chr6:149123115,chr6:149123111 chr6:148815995,chr6:148815979 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Lymphocyte_signaling_adaptor_protein(100%),SAM_domain_(Sterile_alpha_motif)(100%),Variant_SH3_domain(100%) |SAM_1(100%),SAM_2(100%),SH3_2(100%),SLY(100%) 2 3 0 35 29 ENST00000367463.5 ENST00000367467.8 downstream upstream duplicates(1) CTGGCCCCATGGGGCCCCTATGGGGGGCGCCCCTCCGGGCCTGGGCAGCTGGAAGCGTCGGGTGCCCCTGCTGCCTTTCCTGCGCTTCTCCCTCCGGGcCT...GGCCACCCTGCTGGTCTTCTGCCTGGGCTCCCTCCTCTATCAGCTCAGCGGGGGACCCCCTCGCTTCCTGCTCGACCTGCGGCAGTACTTGG|TCAAGAGAACAATCGGATGATGAGACTGAGGAGTCGGTGAAGTTTAAGAGGTTACACAAGCTGGTAAACTCCACTCtCAG...AACCCTGGCCAATCTTTAAtCTAGGCTACATTGGTGCCCTTTATCTGCCCATTTCTGTGTCTTTGCCACAGAATGCACACCTTTCCTTCCCTCATTGCTCC...GACTCAGACTCTCTCACCACGTCTCCATCCTCCAGCAGCCTGGACACCTGGGGGGCTGGCCGGAAGTTGGTCAAAACCTTCAGCAAAGGAGAGAGCCGGG...TCTCCTACCCAGAAGAAGAAAAGGCCCAGAAAGTGTCCCGCTCCCTCACCGAGGGGGAGATGAAGAAGGGTCTCGGGTCCCTAAGCCACGGG___AGAACCTGC ATLLVFCLGSLLYQLSGGPPRFLLDLRQYL|vkrtig* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6786 PVR::ENSG00000287001 ENSG00000073008.16::ENSG00000287001.3 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVR ENSG00000073008.16 protein_coding + + chr19:44643798-44666162:+ chr19:44650105:+ chr19:45147098-45169430:+ chr19:45153377:+ ENSG00000287001 ENSG00000287001.3 lncRNA - + chr19:50095898-50148302:- chr19:50096448:+ chr19:50599155-50651559:- chr19:50599705:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_V-set_domain(100%)| C2-set_2(100%),V-set(100%)| 1 2 2 285 54 ENST00000425690.8 unknown downstream upstream duplicates(14),mismatches(4),multimappers(13) CTTGGGCGCGGCATGGTGAATCTGGCAGCATGGCCGTCTTCCACCAAACGCAGGGCCCCAGCTATTCGGAGTCCAAACGGCTGGAATTgGgGGgAGCCA...GTCTCCACAGGGGGTCGCCCGCCAGCCCAAATCACCTGGCACTCAGACCTGGGCGGGATGCCCAATACGAGCCAGGTGCCAGGGTTCCTGTCTGGCACAGTCACTGTCACCAGCCTCTGGATATTGGTGCCCTCAAGCCAGG...CAAGAATGTGACCTGCAAGGTGGAGCACGAGAGCTTTGAGAAGCCTCAGCTGCTGACTGTGAACCTCACCGTGTACT|GTGTGAAGCTGATGCAGCACAGGCGAGCCCCAAAATTGAGGCTTAGCCCGGGGGGGTTCTTGGCTTCTCCTAGAAACTAATTCAAGAAGCCGGGCGCAGTGGCTCACGCCTGTggTCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACTTGAGGTAAGGAGTTCGAGACCAG KNVTCKVEHESFEKPQLLTVNLTVY|cvklmqhrrapklrlspggflasprn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6787 SIPA1L1::TBPL2 ENSG00000197555.10::ENSG00000182521.6 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SIPA1L1 ENSG00000197555.10 protein_coding + + chr14:71320449-71741229:+ chr14:71414014:+ chr14:71787166-72207946:+ chr14:71880731:+ TBPL2 ENSG00000182521.6 protein_coding - + chr14:55414210-55456726:- chr14:55442827:+ chr14:55880928-55923444:- chr14:55909545:+ NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 0 2 3 65 7 ENST00000555989.5 unknown downstream upstream duplicates(2) GCGCGGCGGACGCGCCCGGGACGCGCGGCGGCACCGGGAGGCCGGGCCGAGCG___GTTTTGAGAGATTACCTGAAGTTGCACTCAAAAGCAAGATATACTACTAACTTTGAAATGGAATAAG|CCCTGATTTGATCTGACTGTTGTCCTCACAAGAAGATGAAATCTGGACACACAGAGACACCAGGGATGTTCACACAGAGAAGGCCAGGTGAGGATGCAGTGAGAAGGCAGCCATCTGCGAATGAAAGAGAGCGGCC...AAGAGAAACCAGCCCTGCTGACACCTTGATCTTGGACTTCCAGCCTCCAGAACT___GTTCATGGCTGAGACATCTGTGAAAAGAAAATAAATCTTGGGACCCCAAAATCACGAAGCCAAAGGGAAAAGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6792 PCAT1::NSMCE2 ENSG00000253438.5::ENSG00000156831.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126734814:+ chr8:127568568-128431295:+ chr8:127747059:+ NSMCE2 ENSG00000156831.8 protein_coding + + chr8:125091679-125367120:+ chr8:125366768:+ chr8:126103921-126379362:+ chr8:126379010:+ chr8:126780723,chr8:126780724 chr8:125357659,chr8:125357657 NA NA chr8:127792968,chr8:127792969 chr8:126369901,chr8:126369899 NA NA sense sense unknown intron CDS/splice-site duplication high none |Zinc-finger_of_the_MIZ_type_in_Nse_subunit(12%) |zf-Nse(0%),zf-RING_UBOX(0%) 1 0 3 2 66 ENST00000645463.1 ENST00000287437.8 downstream upstream none CACTTCCATTCTTCACATTCAGCAGTTACTGGGAGACGACCTTACCATGGCCTGTCCCTCCGTGTTCATCCCAATCGCATCCAGATGCCTCTCTGGCCTCA...CGGACCCTGGCG___GGTGGAACAAGCTTGAAAACTAGGAGGTCCAGTCAACAAGTTAGCTGCGATGCATTCAAGCAGA___CATTTGAGTATGATCTCAACACGTATCTCTcGG|TTGCCCTCAAATTGGCTGTAGCCACACGGATATAAGAAAGTCAGATCTTATCCAGGATGAAGCACTTAGAAGGGCAATTGAGAACCATAACAAGAAAAGACATCGTCATTCCGAGTAGGAAAAGCCACCTGCCTGCAGGGACACCAGCAGCCTACCTCCTACCCCAGCTGTCTGTTGAGAGCAGTGCTGACCCCAGCAGTTAGGGACTGGCTGCATAGCATACTTGTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6796 ZNF767P::ENSG00000224016 ENSG00000291118.1::ENSG00000224016.2 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF767P ENSG00000291118.1 lncRNA - - chr7:149547154-149624752:- chr7:149619924:- chr7:149244245-149321843:- chr7:149317015:- ENSG00000224016 ENSG00000224016.2 unprocessed_pseudogene - - chr7:149891191-149909704:- chr7:149891301:- chr7:149588280-149606793:- chr7:149588390:- chr7:149596544,chr7:149596546 chr7:149906582,chr7:149906581 NA NA chr7:149293635,chr7:149293637 chr7:149603671,chr7:149603670 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 2 44 8 ENST00000463567.5 ENST00000297369.10 upstream downstream mismappers(1) AAGAAGCTGGCTGATTGCGAGAAGACAGCCGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCT...GAAGGAGCCCTGCAACTGGCaCCGCCCTGACCCCAAGATTCCAGATGTTCCTGTGGACCCCAGTCCAG|TGGCCGATACGACATGGAATCATTGAAGACTGGGATCTTATGGAAAGGTTCATGGAGCAAGTGGTTTTTAAATATCTTCGAGCTGAACCTGAGGACCATTATTTTTTAATG___GTGGAGTTTCACTCTTGTCGCCCAGGCTGGAGTcCAGTGGCGTGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6800 PTPN6::PRMT8 ENSG00000111679.17::ENSG00000111218.12 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PTPN6 ENSG00000111679.17 protein_coding + + chr12:6946468-6961316:+ chr12:6957977:+ chr12:7055631-7070479:+ chr12:7067140:+ PRMT8 ENSG00000111218.12 protein_coding + - chr12:3381349-3593973:+ chr12:3467437:- chr12:3490515-3703139:+ chr12:3576603:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS intron inversion/3'-3' medium none Protein-tyrosine_phosphatase(62%),SH2_domain(100%)| SH2(100%),Y_phosphatase(50%)| 2 2 7 147 19 ENST00000399448.5 unknown downstream downstream duplicates(5),mismatches(4) CTGATGAGAACGCTAAGACCTACATCGCCAGCCAGGGcTGTCTGGAGGCCACGGTCAATGACTTCTGGCAGATGGCGTGGCAGGAGAACAGCCGTGTCATC...TGACCACCCGAGAGGTGGAGAAAGGCCGG___AACAAATGCGTCCCATACTGGCCCGAGGTGGGCATGCAGCGTGCTTATGGGCCCTACTCTGTGACCAACTGCGGGGAGCATGACACAACCGAATACAAACTCCGTACCTTACAGGTCTCCCCGCTGGACAAT___GGAGACCTGATTCGGGAGATCTGGCATTACCAGTACCTGAGCTGGCCCGACCATGGGGT|CAATCAGCCTGTGGCCTCTGACCAAGCTCCAGAAGCAAGAAGTCTCTTCTCAGACTGCTCGGGTGTCTGTGCGACCTTCTTCATCGGAAGTGGCTTTTCCCCAGGCCAAACACCTGCTGCTTCCAGATTTCCTCACTGCCGTGTGAACTCATCTTATGTTTCTG...TTTcTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCC TTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGv|nqpvasdqapearslfsdcsgvcatffigsgfspgqtpaasrfphcrvnssyvs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 6 2 DLBCL leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 6802 PPP1R26-AS1::GLT6D1 ENSG00000225361.4::ENSG00000204007.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 667 TRUE 1184 TRUE 456 PPP1R26-AS1 ENSG00000225361.4 lncRNA - - chr9:135462727-135480777:- chr9:135480673:- chr9:138354573-138372623:- chr9:138372519:- GLT6D1 ENSG00000204007.8 protein_coding - - chr9:135623648-135639540:- chr9:135631478:- chr9:138515494-138531386:- chr9:138523324:- chr9:135462869,chr9:135462873 chr9:135634390,chr9:135634391 NA NA chr9:138354715,chr9:138354719 chr9:138526236,chr9:138526237 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Glycosyltransferase_family_6(100%) |Glyco_transf_6(100%) 0 6 0 14 22 ENST00000455039.3 ENST00000371763.6 upstream downstream duplicates(7) AAGCTGCAATTTTACAACCTCACTACAAGCGTCCCCCAGCAAAGCTGCACCGCCATTTCCTGTGCTTGGGAACTGAAGGCAAG|GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG___AAAACGCCCTGATGTTATAACGAAAACAGACTGGCTCGCTCCcGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTACAGAAGGCGGAATATCACTGTGGGCCTGGCCGTCTTTGCTACTGGCAG___GCCCTCCAGGTCAGGACATTCCTTCCCACTCACCAACTCAGCTGAAGCTGTGGGCCCGAC...___GTTTGCAGAGGAGTACCTGAGGCCGTTCCTACACTCCGCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6803 PPP1R26-AS1::GLT6D1 ENSG00000225361.4::ENSG00000204007.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1184 TRUE 456 PPP1R26-AS1 ENSG00000225361.4 lncRNA - - chr9:135462727-135480777:- chr9:135480673:- chr9:138354573-138372623:- chr9:138372519:- GLT6D1 ENSG00000204007.8 protein_coding - - chr9:135623648-135639540:- chr9:135626206:- chr9:138515494-138531386:- chr9:138518052:- chr9:135462869,chr9:135462873 chr9:135634390,chr9:135634391 NA NA chr9:138354715,chr9:138354719 chr9:138526236,chr9:138526237 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Glycosyltransferase_family_6(94%) |Glyco_transf_6(28%) 1 1 0 14 29 ENST00000455039.3 ENST00000371763.6 upstream downstream none GCAATTTTACAACCTCACTACAAGCGTCCCCCAGCAAAGCTGCACCGCCATTTCCTGTGCTTGGGAACTGAAGGCAAG|AAAACGCCCTGATGTTATAACGAAAACAGACTGGCTCGCTCCcGTCCTATGGGAAGGGACTTTCGACAGGCGGGTCCTGGAAAAACATTACAGAAGGCGGAATATCACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6804 PPP1R26-AS1::GLT6D1 ENSG00000225361.4::ENSG00000204007.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1184 TRUE 456 PPP1R26-AS1 ENSG00000225361.4 lncRNA - - chr9:135462727-135480777:- chr9:135472460:- chr9:138354573-138372623:- chr9:138364306:- GLT6D1 ENSG00000204007.8 protein_coding - - chr9:135623648-135639540:- chr9:135631478:- chr9:138515494-138531386:- chr9:138523324:- chr9:135462869,chr9:135462873 chr9:135634390,chr9:135634391 NA NA chr9:138354715,chr9:138354719 chr9:138526236,chr9:138526237 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Glycosyltransferase_family_6(100%) |Glyco_transf_6(100%) 1 0 0 2 22 ENST00000660718.1 ENST00000371763.6 upstream downstream none CAGCAAAGCTGCACCGCCATTTCCTGTGCTTGGGAACTGAAGGCAAG___TTTTTTATCAGCAGTGTTTTGTTTCACTGCCCCAAGTGGAACCGATGAGCGGGG...ACATCTGACTCACCTCAGTGCCCAGGATGGGAGCAAAGCACAG|GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG___AAAACGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6807 DENND5B::PIGT ENSG00000170456.16::ENSG00000124155.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1185 TRUE 457 DENND5B ENSG00000170456.16 protein_coding - - chr12:31382226-31591136:- chr12:31413436:- chr12:31535160-31744070:- chr12:31566370:- PIGT ENSG00000124155.19 protein_coding + + chr20:45416084-45456934:+ chr20:45418852:+ chr20:44044724-44085574:+ chr20:44047492:+ chr12:31411958,chr12:31411960 chr20:45416781,chr20:45416779 NA NA chr12:31564892,chr12:31564894 chr20:44045421,chr20:44045419 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none DENN_(AEX-3)_domain(100%),RUN_domain(40%),dDENN_domain(100%),uDENN_domain(100%)|Gpi16_subunit__GPI_transamidase_component(82%) DENN(100%),RUN(60%),dDENN(100%),uDENN(100%)|Gpi16(74%) 1 1 3 44 665 ENST00000389082.10 ENST00000640666.1 upstream upstream duplicates(1) AGAGAAACAAGAGCACCTTGCAGAATCACCAG___TTGCCCTCGGACCAGAAAGAAGAAAATCTGACTCAGGAGTTATGTTGCCAACGCTCAGGGTCTCTCTTATTCAGGACATGAG___GCATATTCAAAACATGAGTGAGATCAAGACTGATGTTGGACGAGCTCGGGCGTGGATAAGACTGTCTCTAGAAAAGAAGCTCTTGTCCCAGCATCTTAAGCAGTTGCTTTCTAACCAACCACTCACCAA|TGTGGATAAATCTTGGAAGGAG...CCACTGCCTCCTTCAAACCCCTGGGTCTGGCCAATG___ACACTGACCACTACTTTCTGCGCTATGCTGTGCTGCCGCGGGAGGTGGTCTGCACCGAAAACC EKQEHLAESPVALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTn|VDKSWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6812 chr20:45425510-45425573:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6808 DENND5B::PIGT ENSG00000170456.16::ENSG00000124155.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1185 TRUE 457 DENND5B ENSG00000170456.16 protein_coding - - chr12:31382226-31591136:- chr12:31413436:- chr12:31535160-31744070:- chr12:31566370:- PIGT ENSG00000124155.19 protein_coding + + chr20:45416084-45456934:+ chr20:45419295:+ chr20:44044724-44085574:+ chr20:44047935:+ chr12:31411958,chr12:31411960 chr20:45416781,chr20:45416779 NA NA chr12:31564892,chr12:31564894 chr20:44045421,chr20:44045419 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none DENN_(AEX-3)_domain(100%),RUN_domain(40%),dDENN_domain(100%),uDENN_domain(100%)|Gpi16_subunit__GPI_transamidase_component(74%) DENN(100%),RUN(60%),dDENN(100%),uDENN(100%)|Gpi16(69%) 1 0 3 44 777 ENST00000389082.10 ENST00000638246.1 upstream upstream duplicates(1) TTGCCCTCGGACCAGAAAGAAGAAAATCTGACTCAGGAGTTATGTTGCCAACGCTCAGGGTCTCTCTTATTCAGGACATGAG___GCATATTCAAAACATGAGTGAGATCAAGACTGATGTTGGACGAGCTCGGGCGTGGATAAGACTGTCTCTAGAAAAGAAGCTCTTGTCCCAGCATCTTAAGCAGTTGCTTTCTAACCAACCACTCACCAA|ACACTGACCACTACTTTCTGCGCTATGCTG...GTCTGCACCGAAAACCTCACCCCCTGGAAGAAGCTCTTGCCCTGTAGTTCCAAG___GCAGGCCTCTCTGTGCTGCTGAAGGCAGATCGCTTGTTCCACACCAG ALGPERRKSDSGVMLPTLRVSLIQDMRHIQNMSEIKTDVGRARAWIRLSLEKKLLSQHLKQLLSNQPLTk|H* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6812 chr20:45425510-45425573:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6814 RAB11FIP3::NME4 ENSG00000090565.17::ENSG00000103202.13 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471390:+ chr16:475649-573011:+ chr16:521390:+ NME4 ENSG00000103202.13 protein_coding + + chr16:396725-410367:+ chr16:410244:+ chr16:446725-460367:+ chr16:460244:+ chr16:476868,chr16:476866 chr16:409569,chr16:409567 NA NA chr16:526868,chr16:526866 chr16:459569,chr16:459567 NA NA sense sense out-of-frame intron 3'UTR/splice-site duplication medium none none EF-hand_5(100%)|KR(12%),adh_short(13%) 0 2 2 141 230 ENST00000262305.9 ENST00000444498.5 downstream upstream duplicates(1),mismatches(1) CAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATGAGG|TGCGGCCGGGAACTTCCTGTGCCCCGCTGGCGCCTTGTCCTTCAACGCCTTCAAGACCGTGATGGACATCGATACCAGCGGCACCTTCAATGTGTCTCGTGTGCTCTATGAGAAGTTCTT SFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYE|vrpgtscaplapcpstpsrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6815 ANO9::ENSG00000291042 ENSG00000185101.13::ENSG00000291042.1 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANO9 ENSG00000185101.13 protein_coding - - chr11:417933-442011:- chr11:441921:- chr11:417933-442011:- chr11:441921:- ENSG00000291042 ENSG00000291042.1 lncRNA + + chr3:133661926-133754576:+ chr3:133730326:+ chr3:133380770-133473420:+ chr3:133449170:+ chr11:434308,chr11:434311 chr3:133730300,chr3:133730297 NA NA chr11:434308,chr11:434311 chr3:133449144,chr3:133449141 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none none none 0 3 0 56 6 ENST00000332826.7 unknown upstream upstream duplicates(1) CTCCTGGCCGCCAAACCCCAGCTGGAACTCCGGCCACAGCCAGCATGCAG|TTTTCCCTCAGGAAGCCATgGGCATGCCTATCCTTTATGCTGGGCTTCTGGAAGACTCTCCCCTGGAGTTTCACCTGCTACAAATCTTCAGACTCTGTTATCCAAAGCCCAGAGACTGCTGGCTATGGTGGcCT MQ|fslrkpwaclsfmlgfwktlpwsftcykssdsviqspetagygg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6816 NBN::LINC00534 ENSG00000104320.15::ENSG00000253394.7 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBN ENSG00000104320.15 protein_coding - - chr8:89924515-90003228:- chr8:89953244:- chr8:90936743-91015456:- chr8:90965472:- LINC00534 ENSG00000253394.7 lncRNA + - chr8:90221341-90687863:+ chr8:90521451:- chr8:91233569-91700091:+ chr8:91533679:- chr8:89952682,chr8:89952684 chr8:90523968,chr8:90523968 NA NA chr8:90964910,chr8:90964912 chr8:91536196,chr8:91536196 NA NA sense antisense out-of-frame CDS intron duplication/5'-5' medium none FHA_domain(100%),Second_BRCT_domain_on_Nijmegen_syndrome_breakage_protein(100%)| BRCT(100%),FHA(100%),NIBRIN_BRCT_II(100%),RTT107_BRCT_5(100%)| 1 1 1 393 2 ENST00000697292.1 unknown upstream downstream mismatches(1) AAAAAAGGGAAATGGATGATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAGTTAGAAATTGATGTGAAAGTTCAAAAA...GAAACAAATGACACTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAATATCT|GACAATTGTAATGAGCAGAAAGAACACGTGTCACTTCCAGTCCAGAGAATTTAACTGCTCATTCCAGCCTCTCCAGTTTTTCCCTGTACCTGGCATGGTGATTGGCC ETNDTFSDEAVPESSKIS|dncneqkehvslpvqri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nibrin 1 NHL, glioma, medulloblastoma, rhabdomyosarcoma Nijmegen breakage syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 6819 PRKCH::MNAT1 ENSG00000027075.17::ENSG00000020426.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61322761:+ chr14:61654277-62017694:+ chr14:61789479:+ MNAT1 ENSG00000020426.11 protein_coding + + chr14:60734742-60969965:+ chr14:60796217:+ chr14:61201460-61436683:+ chr14:61262935:+ chr14:61379964,chr14:61379963 chr14:60774116,chr14:60774112 NA NA chr14:61846682,chr14:61846681 chr14:61240834,chr14:61240830 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none C2_domain(100%)|CDK-activating_kinase_assembly_factor_MAT1(100%),Zinc_finger__C3HC4_type_(RING_finger)(42%) C2(100%),CDC50(100%)|MAT1(100%),zf-C3HC4_5(0%),zf-RING_UBOX(0%) 0 1 1 2 401 ENST00000555082.5 ENST00000261245.9 downstream upstream duplicates(1),mismappers(1) TTGGTCTTCGTCCAgGTGGCCGCGGCACTGGTGACGCGACCGCGGTGGGTGTGTGCAGGCGCAGGTGTGTCTCCAGGAAGCCGGCCTGGACACGATCCCCT...GACAGCGGCTTGGCCTAACGGGAAGTCGGGCAGGGGTCCAGGGCGGTCACCCTTTCCGCCCAGTCTTTGG|CTGTGAAAGTTGTGTAGATTTACTGTTTGTGAGAGGAGCTGGAAA...CCACTCAGAAAGAGCAACTTCAGGGTACAACTCTTTGAAGATCCCACTGTTGACAAGGAGGTTGAGATCAGGAAAAAAGTGCTAAAGAT___ATACAATAAAAGGGAAGAAGATTTTCCTAGTCTAAGAGAATACAATGATTTCTTGGAAGAAGTGGAAGAAATTG___TTTTCAACTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 61789182 FALSE 61434947 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6820 ENSG00000289291::ALDH5A1 ENSG00000289291.1::ENSG00000112294.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000289291 ENSG00000289291.1 lncRNA - - chr1:28736044-28737670:- chr1:28737585:- chr1:29062556-29064182:- chr1:29064097:- ALDH5A1 ENSG00000112294.14 protein_coding + + chr6:24494867-24537207:+ chr6:24511831:+ chr6:24495095-24537435:+ chr6:24512059:+ chr1:28736696,chr1:28736698 chr6:24511276,chr6:24511274 NA NA chr1:29063208,chr1:29063210 chr6:24511504,chr6:24511502 NA NA sense sense unknown exon CDS/splice-site translocation medium none |Aldehyde_dehydrogenase_family(63%) |Aldedh(56%) 0 2 0 23 9 ENST00000691740.1 ENST00000348925.2 upstream upstream none GGGGAAGGAAACGTCGCCGAGCAGCAAGTTGTCCAAAGGAGAAATGGAAAAGGAAGAACAAATTAAGG|TAAATCAGGGATTTCTTCTTGATTTGGATCCATTGTTG___CTTGCAAGCCAGGCTGGGATTCCTTCAGGTGTATACAATGTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6821 NBN::ENSG00000254180 ENSG00000104320.15::ENSG00000254180.2 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBN ENSG00000104320.15 protein_coding - - chr8:89924515-90003228:- chr8:89953244:- chr8:90936743-91015456:- chr8:90965472:- ENSG00000254180 ENSG00000254180.2 lncRNA - - chr8:90198389-90620077:- chr8:90521451:- chr8:91210617-91632305:- chr8:91533679:- chr8:89952682,chr8:89952684 chr8:90523968,chr8:90523968 NA NA chr8:90964910,chr8:90964912 chr8:91536196,chr8:91536196 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none FHA_domain(100%),Second_BRCT_domain_on_Nijmegen_syndrome_breakage_protein(100%)| BRCT(100%),FHA(100%),NIBRIN_BRCT_II(100%),RTT107_BRCT_5(100%)| 1 1 0 393 2 ENST00000697292.1 unknown upstream downstream none AAAAAAGGGAAATGGATGATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAGTTAGAAATTGATGTGAAAGTTCAAAAA...GAAACAAATGACACTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAATATCT|GACAATTGTAATGAGCAGAAAGAACACGTGTCACTTCCAGTCCAGAGAATTTAACTGCTCATTCCAGCCTCTCCAGTTTTTCCCTGTACCTGGCATGGTGATTGGCC ETNDTFSDEAVPESSKIS|dncneqkehvslpvqri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nibrin 1 NHL, glioma, medulloblastoma, rhabdomyosarcoma Nijmegen breakage syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 6836 C5orf24::DDX46 ENSG00000181904.9::ENSG00000145833.16 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C5orf24 ENSG00000181904.9 protein_coding + + chr5:134845680-134859735:+ chr5:134846212:+ chr5:134181370-134195425:+ chr5:134181902:+ DDX46 ENSG00000145833.16 protein_coding + + chr5:134758771-134855133:+ chr5:134826947:+ chr5:134094461-134190823:+ chr5:134162637:+ chr5:134854195 chr5:134820541 NA NA chr5:134189885 chr5:134156231 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 3 7 5 131 703 ENST00000394976.4 ENST00000452510.7 downstream upstream duplicates(2),mismatches(1) GCCAGCGCCTGCCTCGCCGCCGCCCTCGCTGCCTGCCACTCCGTCTTGGCCCGTTCTCCGCACCGTGCAGAGGCGGCGGGCTGGGGAGGGAGCGGCGCCAGCACGAGGTTCCCAGCCGCTGGGAAGCCCCTAGACGCGCCGAGGGGCCGGGCTACGAGCGGCTGAG|GTGCCAATGAACTGGCTGTGCAGAAAGCAAAGGCAGAAATCACCAGGCTCATAAAAGAAGAGCTGATCCGGCTG___CAAAATTCATACCAACCAACAAATAAAGGAAGATACAAAGTCTTATAGACATCCGGAAAAAAGATTTTTACCTGTGCTGGTCTATGATGTATGTGGCAGTTGCTGTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6859 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 669 TRUE 1194 TRUE 458 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3690985:- chr16:3701640-3767554:- chr16:3740986:- chr16:3818993 chr16:3706503 NA NA chr16:3868994 chr16:3756504 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(100%) |Exo_endo_phos(100%),HATPase_c(100%),HATPase_c_3(100%),HSP90(100%) 23 28 61 429 1209 ENST00000262367.10 ENST00000246957.10 upstream downstream duplicates(18),low_entropy(4),mismappers(4),mismatches(3) CTAACTTTAACCAGACCCACCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|GAAAACCAATTCTGTGTCCTCGGAGGACCACAGCCCAGTTGGGCCCCAGGCGAAACCCAGCCTGGAGCTTGCAGGCAGGACGACTGTTCAGCACGCAGACCGCCGAGGACAAGGAGGAACCCCTGCACTCGATTATCAGCAGCACAGAGAGCGTGCAGG___GTTCCACTTCCAAACATGAGTTCCAGGCCGAGACAAAGAAGCTTTTGGACATTGTTGCCCGGTCCCTGTACTCAGAAAAAGAG___GTGTTTATACGGGAGCTGATCTCCAATGCCAGCGATGCCTTGGAAAAACTGCGTCACAAACTGGTGTCTGACGGCCAAGCACTGCCAGAAATGGAGATTCACTTGCAGACCAATGCCGAGAAAGGC NFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|enqfcvlggpqpswapgetqpgacrqddcsarrpprtrrnpctrlsaaqracrvplpnmssrprqrsfwtllpgpctqkkrclygs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6860 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1194 TRUE 458 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3879832:- chr16:3775055-3930714:- chr16:3929833:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3690985:- chr16:3701640-3767554:- chr16:3740986:- chr16:3818993 chr16:3706503 NA NA chr16:3868994 chr16:3756504 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(100%) |Exo_endo_phos(100%),HATPase_c(100%),HATPase_c_3(100%),HSP90(100%) 0 3 0 271 1209 ENST00000262367.10 ENST00000246957.10 upstream downstream duplicates(1) CGCCCAACCCCAAAAGAGCCAAACTCAGCTCGCCCGGTTTCTCGGCGAATGACAGCACAG|GAAAACCAATTCTGTGTCCTCGGAGGACCACAGCCCAGTTGGGCCCCAGGCGAAACCCAGCCTGGAGCTTGCAGGCAGGACGACTGTTCAGCACGCAGACCGCCGAGGACAAGGAGGAACCCCTGCACTCGATTATCAGCAGCACAGAGAGCGTGCAGG___GTTCCACTTCCAAACATGAGTTCCAGGCCGAGACAAA PNPKRAKLSSPGFSANDST|gKPILCPRRTTAQLGPRRNPAWSLQAGRLFSTQTAEDKEEPLHSIISSTESVQGSTSKHEFQAET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 6864 HACE1::LIN28B ENSG00000085382.12::ENSG00000187772.8 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HACE1 ENSG00000085382.12 protein_coding - - chr6:104728094-104859919:- chr6:104849142:- chr6:105175969-105307794:- chr6:105297017:- LIN28B ENSG00000187772.8 protein_coding + - chr6:104936616-105083332:+ chr6:104958468:- chr6:105384491-105531207:+ chr6:105406343:- chr6:104848177 chr6:104974214 NA NA chr6:105296052 chr6:105422089 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ankyrin_repeats_(3_copies)(80%)| Ank(2%),Ank_2(2%),Ank_3(6%),Ank_4(2%),Ank_5(7%)| 30 19 19 101 64 ENST00000262903.9 unknown upstream downstream duplicates(19),mismappers(2),mismatches(2) CTGAACTACTATCAAATTCAAAATTTGATGTCAATTATGCATTCGGACGTGTGAAAAGAAGCTTGCTTCACATTGCAGCAAA___TTGTGGATCGGTGGAATGCTTGGTTTTGCTGTTAAAGAAAGGAGCAAATCCTAACTATCAAGATATTTCAGGCTGTACACCCCTTCATTTGGCAGCAAGAAATGG|ACAGAAAACCCAGGAAAAGGCCCATACACGTACCCTAAACGTTGGACTACCTAGTGATTTCAGGGAAGATTTTGTCTTTCAATATACCGAAGGACATCTTATCGTACGTCTATTGGCATAACTACCGATCAGCTCCTCCACATGGAAAAAGATGAAGAGGGGGACAAAAAAGTTTGGCTTACTTGGTGTACAAATACATCGACTGGAATATCCAAGGGGCTTCCCTCTCGGTTTATCATGGAGATGAATCCA ELLSNSKFDVNYAFGRVKRSLLHIAANCGSVECLVLLLKKGANPNYQDISGCTPLHLAARNg|qktqekahtrtlnvglpsdfredfvfqyteghlivrlla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6870 NRP1::ITGB1 ENSG00000099250.18::ENSG00000150093.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NRP1 ENSG00000099250.18 protein_coding - - chr10:33177492-33336262:- chr10:33254028:- chr10:33466420-33625190:- chr10:33542956:- ITGB1 ENSG00000150093.20 protein_coding - - chr10:32887273-33005792:- chr10:32923740:- chr10:33176201-33294720:- chr10:33212668:- chr10:33227243,chr10:33227248 chr10:32924814,chr10:32924816 NA NA chr10:33516171,chr10:33516176 chr10:33213742,chr10:33213744 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none CUB_domain(100%),F5/8_type_C_domain(13%)|EGF-like_domain(100%),Integrin_beta_chain_VWA_domain(48%),Integrin_beta_cytoplasmic_domain(100%),Integrin_beta_epidermal_growth_factor_like_domain_1(100%),Integrin_beta_tail_domain(100%) CUB(100%),F5_F8_type_C(0%)|EGF_2(100%),I-EGF_1(100%),Integrin_B_tail(100%),Integrin_b_cyt(100%),Integrin_beta(42%) 19 20 17 125 685 ENST00000265371.8 ENST00000678989.1 upstream downstream duplicates(10),mismatches(1) CCTCATCGGGCATTCTCTCCATGGTTTTTTACACCGACAGCGCGATAGCAAAAGAAGGTTTCTCAGCAAACTACAGTGTCTTGCAGAGCAGTGTCTCAGAAG___ATTTCAAATGTATGGAAGCTCTGGGCATGGAATCAGGAGAAATTCATTCTGACCAGATCACAGCTTCTTCCCAGTATAGCACCAACTGGTCTGCAGAGCGCTCCCGCCTGAACTACCCTGAGAATGGGTGGACTCCCGGAGAGGATTCCTACCGAGAGTGGATACAG|TCACTGATTGGCTGGAGGAATGTTACACGGCTGCTGGTGTTTTCCACAGATGCCGGGTTTCACTTTGCTGGAGATGGGAAACTTGGTGGCATTGTTTTACCAAATGATGGACAATGTCACCTGGAAAATAATATGTACACAATGAGCCATTATTAT___GATTATCCTTCTATTGCTCACCTTGTCCAGAAACTGAGTGAAAATAATATTCAGAC SSGILSMVFYTDSAIAKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDSYREWIQ|SLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6871 ATP6V1H::OPRK1 ENSG00000047249.18::ENSG00000082556.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1H ENSG00000047249.18 protein_coding - - chr8:53715543-53843558:- chr8:53829444:- chr8:54628103-54756118:- chr8:54742004:- OPRK1 ENSG00000082556.14 protein_coding - + chr8:53225724-53251637:- chr8:53227928:+ chr8:54138284-54164197:- chr8:54140488:+ chr8:53827333 chr8:53226152 NA NA chr8:54739893 chr8:54138712 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR inversion/5'-5' high none V-ATPase_subunit_H(19%)| V-ATPase_H_N(17%)| 19 9 24 550 49 ENST00000355221.7 unknown upstream upstream duplicates(9),mismatches(3) GCCAAGGCTGCAGAAGTTCGTGCAAACAAAGTCAACTGGCAATCCTATCTTCA___GGGACAGATGATTTCTGCTGAAGATTGTGAGTTTATTCAGAGGTTTGAAATGAAACGAAGCCCTGAAGAGAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAG___TGTGCTAAAACATTTATAAATCTGATGACTCATATCTGCAAAGAACAGACCGTTCAGTATATACTAACTATGGTGGATGATATGCTGCAG|GCAAATTACAGAAAAAGCCATTACCTCTGAAATG___...GGTATGCCCTTCACAGAATGCCATGCAGGATGTGTCCTGGCACCAGGAGGGACATCATGTCCTCATTCAGCACACATTTAGGAACAATTCTACTTCCTGCTGAGAGCCACAAAATAGTACCTTGAGATCTACAGAAGCAAAACACC...___GAAGGCCACAGCAGATGGGTGCTGAACC AKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHICKEQTVQYILTMVDDMLQ|anyrkshyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6872 AGAP1::GBX2-AS1 ENSG00000157985.20::ENSG00000233611.4 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1198 TRUE 459 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ GBX2-AS1 ENSG00000233611.4 lncRNA + + chr2:236167418-236294927:+ chr2:236259507:+ chr2:237076061-237203570:+ chr2:237168150:+ chr2:235754014,chr2:235754013 chr2:236238950,chr2:236238946 NA NA chr2:236662658,chr2:236662657 chr2:237147593,chr2:237147589 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ras_family(96%)| Ras(46%)| 11 13 26 205 56 ENST00000304032.13 ENST00000415226.1 downstream upstream duplicates(12),mismappers(4),mismatches(3) ACTACAGTCGAATGGCCAACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|GGAGGATGCACGATTTCTGTCCCAGTGGGAAGGGATGGCCTTCCAGTGGACGTGACCTCCCCTGCATGGGGTCGGAAGGATGAGATGGCAAAG___GAGCGTCTGGTCACCTGCAAATTGGACATGCCTCAAACGCATAGAATGGAATGGAATCTTTGGTTTCCAAATGCAGAGAAGGACTGGCTGATCTCAGGAAGACGGAAGCATCACAGAAAAACAAAAAAAAG...TC?AGGCTGGTAAACTTTGCTCAAAGCCTATAATTCCATGACTTGTGGAAGTGTGGAGCCCTCAGGGGGATTTCTGTGCACTCCTAGGGGCAAAGGTGGG YSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|grmhdfcpsgkgwpssgrdlpcmgseg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6873 AGAP1::GBX2-AS1 ENSG00000157985.20::ENSG00000233611.4 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1198 TRUE 459 AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ GBX2-AS1 ENSG00000233611.4 lncRNA + + chr2:236167418-236294927:+ chr2:236277372:+ chr2:237076061-237203570:+ chr2:237186015:+ chr2:235754014,chr2:235754013 chr2:236238950,chr2:236238946 NA NA chr2:236662658,chr2:236662657 chr2:237147593,chr2:237147589 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ras_family(96%)| Ras(46%)| 5 2 1 205 38 ENST00000304032.13 ENST00000415226.1 downstream upstream duplicates(1),mismappers(2),mismatches(2) CTGCTGCTGATCAGAGATGAAGGGGGCCCCCCGGAGGCGCAG___TTTGCCATGTGGGTGGACGCTGTTATATTTGTCTTCAGCTTGGAGGATGAAATAAGTTTC...ACTATCGGAACACGAGCGAGATTCCTCTGGTTCTGGTGGGAACCCAGG___ATGCCATAAGTTCTGCTAACCCGAGGGTCATCGATGACGCCAGGGCGAGGAAGCTCTCCAACGACCTGAAACGGTGCACGTACTACGAGACGTGTGCTACATACGGGCTGAATGTGGAGAGGGTCTTCCAGGACG|GTGGCTTGTAATGAGAAGCAAAAGAAAAGAAAAAGGAAAAAGAAGATTCTAGGTGATAAATGAGCATCTTCA...AGAGGATGCAGCATCAAGACGCCATCTTGAACATGGAGACCAGACCCTCAACAATGAATCTGCCAGCCTCTCGATCCTGGACTCTCAGCCTC...CTGTGAGAAACAAAATTATGTTGTTTTTTAACTACCCAGTTGCAGGTGTTGTTTTGTAGCAGCCCGAACAAAAAGAGTGACATTTAAAGTCATGATTCTAG YRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQD|ggl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6875 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1199 TRUE 460 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:128105175:- chr8:128806772-129199347:+ chr8:129117421:- chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026,chr8:127183026 chr8:128172281,chr8:128172284,chr8:128172256,chr8:128172285,chr8:128172288,chr8:128172289,chr8:128172290,chr8:128172291,chr8:128172252,chr8:128172292,chr8:128172293,chr8:128172294,chr8:128172295,chr8:128172296,chr8:128172299,chr8:128172300,chr8:128172301,chr8:128172305,chr8:128172307,chr8:128172242,chr8:128172243,chr8:128172245,chr8:128172247,chr8:128172248,chr8:128172249,chr8:128172250,chr8:128172251,chr8:128172253,chr8:128172254,chr8:128172255,chr8:128172257,chr8:128172258,chr8:128172264,chr8:128172259,chr8:128172266,chr8:128172262,chr8:128172261,chr8:128172267,chr8:128172268,chr8:128172269,chr8:128172270,chr8:128172271,chr8:128172272,chr8:128172273,chr8:128172274,chr8:128172275,chr8:128172276,chr8:128172277,chr8:128172278,chr8:128172279,chr8:128172280 NA NA chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271,chr8:128195271 chr8:129184527,chr8:129184530,chr8:129184502,chr8:129184531,chr8:129184534,chr8:129184535,chr8:129184536,chr8:129184537,chr8:129184498,chr8:129184538,chr8:129184539,chr8:129184540,chr8:129184541,chr8:129184542,chr8:129184545,chr8:129184546,chr8:129184547,chr8:129184551,chr8:129184553,chr8:129184488,chr8:129184489,chr8:129184491,chr8:129184493,chr8:129184494,chr8:129184495,chr8:129184496,chr8:129184497,chr8:129184499,chr8:129184500,chr8:129184501,chr8:129184503,chr8:129184504,chr8:129184510,chr8:129184505,chr8:129184512,chr8:129184508,chr8:129184507,chr8:129184513,chr8:129184514,chr8:129184515,chr8:129184516,chr8:129184517,chr8:129184518,chr8:129184519,chr8:129184520,chr8:129184521,chr8:129184522,chr8:129184523,chr8:129184524,chr8:129184525,chr8:129184526 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 10 5 25 2960 79 ENST00000641496.2 unknown upstream downstream duplicates(7),low_entropy(1),mismatches(2) ACCAGCTGCCGTGTTAAGCATTGCGAAAACGCTCACGATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GCGTGGGGGGTTGCTGTTACTGTTTCTGCCTGACAAGAGAGCATGTGGAGGTGTGGAGCATCAGGCAACTAGTCCAGGCCCAAACCGCTTGGGTGTGGAGGAGCAGCATGGCCAAGATTTGCACCCATCCACTCAGCTCCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6877 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1199 TRUE 460 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070160:+ chr8:128806772-129199347:+ chr8:129082406:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 3 2960 939 ENST00000641912.1 ENST00000651587.1 upstream upstream duplicates(1) TGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAGGA...GTGGACATGAGGTAACCACAGCCTAGTTCTGTGATAAGCTCTTCACACCTGTACCCATATGGACTGTGGGAGAGTTTCTCTGATATGGACTGTGATGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6878 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1199 TRUE 460 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 3 2960 1396 ENST00000641912.1 ENST00000651587.1 upstream upstream duplicates(1) TGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6879 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1199 TRUE 460 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127197475:- chr8:128084939-128239786:- chr8:128209720:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 1 760 3 ENST00000701231.1 ENST00000651587.1 upstream upstream none ATGGAAGGCTTCCTAAAGAG|GCCTCCAGGTGTCTGCATTCTGATCCTTGAAGAGTTCATGGACCTAAGTTAAGAACCTCTCCTCAAGAGACTGAATGCAGGCAGAGATGGCTTATTGGTTCATCACAGGTTATGTGAACTACCCACT___ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6882 SMAD3::IQCH ENSG00000166949.17::ENSG00000103599.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 675 TRUE 1200 TRUE 461 SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67125984:+ chr15:67356101-67487511:+ chr15:67418322:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:67129985,chr15:67129983 chr15:67384104,chr15:67384099 NA NA chr15:67422323,chr15:67422321 chr15:67676442,chr15:67676437 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none MH1_domain(38%)| MH1(60%)| 9 7 18 59 64 ENST00000540846.6 ENST00000335894.9 downstream upstream duplicates(10),mismappers(4),mismatches(4) AGCCTGCTGCTGAGTTCACTGGTGCTGGGGTTAGGTCACTGCTGGGCTGAAGCGCACTGACCATAAGAGCAACATGTGGGCAAGAGCCGCGGCACTGGGGTAATTTATTGCCGCCGCTCGCTTCACCAGGAACCCCACACaCTGGGTTCCCACAGGATGCGACATTCCCACAGGATGGGACAACTGCATGGAAACCCACACTCGGGCCTGTGTTGAGCAACCACGTTTGA|GGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAG___ATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTACATGCAGCCGTCAAATCTGGGAACCTTGAGGACAGAAGTGACCTGCAGGACAGGTTCAAAATTATCACACCTGAAGCTGTAAACATCTTCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS exact 67181453|67184864|67181453 FALSE|FALSE|FALSE 67465127|67465127|67475696 FALSE|FALSE|FALSE TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 6883 SMAD3::IQCH ENSG00000166949.17::ENSG00000103599.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 676 TRUE 1200 TRUE 461 SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67066360:+ chr15:67356101-67487511:+ chr15:67358698:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:67129985,chr15:67129983 chr15:67384104,chr15:67384099 NA NA chr15:67422323,chr15:67422321 chr15:67676442,chr15:67676437 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none MH1_domain(38%)| MH1(0%)| 7 5 5 70 64 ENST00000327367.9 ENST00000335894.9 downstream upstream duplicates(5),mismatches(1) CGTGAAGCGCCTGCTGGGCTGGAAGAAGGGCGAGCAGAACGGGCAGGAGGAGAAATGGTGCGAGAAGGCGGTCAAGAGCCTGGTCAAGAAACTCAAGAAGACGGGGCAGCTGGACGAGCTGGAGAAGGCCATCACCACGCAGAACGTCAACACCAAGTGCATCACCATCCCCAG|GGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAG___ATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTACATGCAGCCGTCAAATCTGGGAACCTTGAGGACAGAAGTGACCTGCAGGACAGGTTCAAAATTATCACACCTGAAGCTGTAAAC VKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPr|vfpacertycrfqhtaehaageav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS exact 67181453|67184864|67181453 FALSE|FALSE|FALSE 67465127|67465127|67475696 FALSE|FALSE|FALSE TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 6884 SMAD3::IQCH ENSG00000166949.17::ENSG00000103599.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1200 TRUE 461 SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67099024:+ chr15:67356101-67487511:+ chr15:67391362:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:67129985,chr15:67129983 chr15:67384104,chr15:67384099 NA NA chr15:67422323,chr15:67422321 chr15:67676442,chr15:67676437 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none MH1_domain(38%)| MH1(33%)| 0 1 6 5 64 ENST00000559092.1 ENST00000335894.9 downstream upstream duplicates(2),mismatches(1) GTGTGGAGGAGGGTCAGGCAGCCCATGGAGATGGGACAGTGTTCTGAAATGCTTCACAAATGTGGACTTTTGCCCCAAACTGTGGACAGAGCGTATGTCCT...GCGAGGATCAACTCT|GGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAG___ATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTAC...GTAAACATCTTCCCT___GAGCCAGCTTTGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAGCACGCACAGCCAGTCAATGAGAAACGGTTCCCGAC EDQL|wYSQPVREHIADFNTQQNMQLGRLCDILDANVNVIYICSHHMNDELVLYYKKILSL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS exact 67181453|67184864|67181453 FALSE|FALSE|FALSE 67465127|67465127|67475696 FALSE|FALSE|FALSE TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 6885 VPS35::MYLK3 ENSG00000069329.19::ENSG00000140795.13 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 677 TRUE 1201 TRUE 462 VPS35 ENSG00000069329.19 protein_coding - - chr16:46656132-46689518:- chr16:46678943:- chr16:46690044-46723430:- chr16:46712855:- MYLK3 ENSG00000140795.13 protein_coding - - chr16:46702282-46790407:- chr16:46732668:- chr16:46736194-46824319:- chr16:46766580:- chr16:46677677,chr16:46677679 chr16:46733026,chr16:46733025 NA NA chr16:46711589,chr16:46711591 chr16:46766938,chr16:46766937 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Vacuolar_protein_sorting-associated_protein_35_(30%)|Protein_kinase_domain(100%) Vps35(20%)|ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 11 8 14 1129 36 ENST00000299138.12 ENST00000394809.9 upstream downstream duplicates(10),mismappers(1),mismatches(7) GAAACAACTGGTGACATCAGTGATTCCATGGATTTTGTACTGCTCAACTTTGCAGAAATGAACAAGCTCTGGGTGCGAATGCAGCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGACAAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGCCTCAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAG|GATCTCCATCCACATACAAGAGATGGATACTCCTGGGGAGATGCTGATGACAGGCAGGGGCAGCCTTGGACCCACCCTCACCACAGAGGCTCCAGCAGCTGCCCAGCCAGGCAAGCAGGGCCCACCTGGGACCGGGCGCTGCCTCCAAGCCCCTGGGACTGAGCCCGGAGAACAGACCCCTGAAGGAGCCAGAGAGCTCTCCCCGCTGCAGGAGAGCAGCAGCCCCGGGGGAGTGAAGGCAGAGGAGGAGCAAAGGGCTGGGGCCGAGCCTGGC ETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ|dlhphtrdgyswgdaddrqgqpwthphhrgssscparqagptwdralppspwd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Myosin light chain kinase 3 CAMK MLCK Q32MK0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6886 VPS35::MYLK3 ENSG00000069329.19::ENSG00000140795.13 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1201 TRUE 462 VPS35 ENSG00000069329.19 protein_coding - - chr16:46656132-46689518:- chr16:46680671:- chr16:46690044-46723430:- chr16:46714583:- MYLK3 ENSG00000140795.13 protein_coding - - chr16:46702282-46790407:- chr16:46732668:- chr16:46736194-46824319:- chr16:46766580:- chr16:46677677,chr16:46677679 chr16:46733026,chr16:46733025 NA NA chr16:46711589,chr16:46711591 chr16:46766938,chr16:46766937 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Vacuolar_protein_sorting-associated_protein_35_(20%)|Protein_kinase_domain(100%) Vps35(12%)|ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 0 0 882 36 ENST00000299138.12 ENST00000394809.9 upstream downstream low_entropy(1) GTGCAACATCCCTTGAGGGGTCTGTTTCTTCGAAATTACCTTCTTCAGTGTACCAGAAATATCTTACCTGATGAAGGAGAGCCAACAGA|GATCTCCATCCA...TCCAGCAGCTGCCCAGCCAGGCAAGCAGGGCCCACCTGGGACCGGGCGCTGCCTCCAAGCCCCTGGGACTGAGCCCGGAGAACAGACCCCTGAAGGAGCC VQHPLRGLFLRNYLLQCTRNILPDEGEPTe|ISI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Myosin light chain kinase 3 CAMK MLCK Q32MK0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6887 CDH13::LYPD9P ENSG00000140945.17::ENSG00000229703.6 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1202 TRUE 463 CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83032218:+ chr16:82660570-83834245:+ chr16:83065823:+ LYPD9P ENSG00000229703.6 transcribed_unitary_pseudogene + + chr1:248691760-248716755:+ chr1:248697031:+ chr1:248855061-248880056:+ chr1:248860332:+ chr16:83102820,chr16:83102816 chr1:248693978,chr1:248693971 NA NA chr16:83136425,chr16:83136421 chr1:248857279,chr1:248857272 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cadherin_domain(0%),Cadherin_prodomain_like(100%)| Cadherin(0%),Cadherin_pro(34%)| 10 9 7 192 17 ENST00000567109.6 ENST00000437830.4 downstream upstream duplicates(1),mismatches(1) ACGACAAGCTACGCTATGAGGTCTCGAGCCCATACTTCAAGGTGAACAGCGATGGCGGCTTAGTTGCTCTGAGAAACATAACTGCAGTGGGCAAAACTCTGTTCGTCCATGCACGGACCCCCCATGCGGAAGATATGGCAGAACTCGTGATTGTCGGGGGGAAAGACATCCAGGGCTCCTTGCAG|TCTCCTGGGAGATTAAGATGAGTGATCTAGAGGAGGAAGATGTTGATGAATTCAGCTCCAGTGGTTTTAAGTGCCCAACATGCTTTGCAGTGCAAGGAAGGAAATGCGATACAGAACTCAAATGGTGTGCAGCAGATAAAATAAAGTGTATTGAATTCTCTGGCATCATAAACACAG___GTATTCGTGACGTAGCC DKLRYEVSSPYFKVNSDGGLVALRNITAVGKTLFVHARTPHAEDMAELVIVGGKDIQGSLQ|spgrlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-8058 chr16:82688931-82689019:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6888 CDH13::LYPD9P ENSG00000140945.17::ENSG00000229703.6 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1202 TRUE 463 CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83032218:+ chr16:82660570-83834245:+ chr16:83065823:+ LYPD9P ENSG00000229703.6 transcribed_unitary_pseudogene + + chr1:248691760-248716755:+ chr1:248716565:+ chr1:248855061-248880056:+ chr1:248879866:+ chr16:83102820,chr16:83102816 chr1:248693978,chr1:248693971 NA NA chr16:83136425,chr16:83136421 chr1:248857279,chr1:248857272 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cadherin_domain(0%),Cadherin_prodomain_like(100%)| Cadherin(0%),Cadherin_pro(34%)| 1 2 0 192 20 ENST00000567109.6 ENST00000611154.3 downstream upstream duplicates(2),low_entropy(1) GGACCAGTCAATTCTAAACT___TGACCTTCAGTGACTGTAAGGGAAACGACAAGCTACGCTATGAGGTCTCGAGCCCATACTTCAAGGTGAACAGCGATGGCG...CAAAACTCTGTTCGTCCATGCACGGACCCCCCATGCGGAAGATATGGCAGAACTCGTGATTGTCGGGGGGAAAGACATCCAGGGCTCCTTGCAG|GGCACAATAAGGGAAACTGGTTATTTTATGAAGGCTTTGGCTGGAATGGTGTGCTTTCCTTTAAGGAATCAAACTTGACTTATGGAGCCAATAAAAGCTACTTGGGAAAACTGGCCTCATACCTTGTCTACACAGTCCCTGTACAGGATTCCTGATGTGTG___ATGCAAAGGATACAGCACAGAGCTGCCAAGACCCGG KTLFVHARTPHAEDMAELVIVGGKDIQGSLQ|gtiretgyfmkalagmvcfplrnqt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-8058 chr16:82688931-82689019:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6889 CDC37L1::JAK2 ENSG00000106993.12::ENSG00000096968.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 678 TRUE 1203 TRUE 464 CDC37L1 ENSG00000106993.12 protein_coding + + chr9:4679559-4708399:+ chr9:4685158:+ chr9:4679559-4708399:+ chr9:4685158:+ JAK2 ENSG00000096968.14 protein_coding + + chr9:4984390-5129948:+ chr9:5044403:+ chr9:4984390-5129948:+ chr9:5044403:+ chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |FERM_F1_ubiquitin-like_domain(18%),FERM_F2_acyl-CoA_binding_protein-like_domain(100%),Jak1_pleckstrin_homology-like_domain(100%),Protein_kinase_domain(100%),SH2_domain(100%) |FERM_F1(0%),FERM_F2(100%),Jak1_Phl(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(100%) 10 11 5 192 70 ENST00000381854.4 ENST00000381652.4 downstream upstream duplicates(5),mismappers(1) CCAG___ATGTATAGCCATGGAATTGAATTGGCTTGCCAAAAGCAGAAAGAGTTTGTGAAGAGCTCTGTGGCGTGCAAATGGAATCTTGCTGAAGCTCAACAGAAACTTGGTAGCTTAGCACTGCATAATTCTGAGTCCTTGGATCAGGAGCATGCCAAAGCACAAACAGCAGTATCAGAACTGAGGCAACGGGAAGAAGAGTGGCGACAGAAAGAAGAAGCTCTAGTACAAAGAGAGAAGATGTGTCTGTGGAGCACGGATGCCATTAGCAAGGATGTTTTTAATAAG|ATTTTACTTTCCTCGTTGGTATTGCAGTGGCAGCAACAGAGCCTATCGGCATGGAATATCTCGAGGTGCTGAAGCTCCTCTTCTTGATGACTTTGTCATGTCTTACCTCTTTGCTCAG___TGGCGGCATGATTTTGTGCAtGGATGGATAAAAGTACCTGTGACTCATGAAACACAGGAAGAATGTCTTGGGATGGCAGTGTTAGATATGATGAGAATAGCCAAAGAAAACGATCAAAC QMYSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNK|illsslvlqwqqqslsawnisrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase JAK2 TK Jak O60674 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Janus kinase 2 1 Yes ALL, AML, MPN, CML leukaemia_lymphoma oncogene, fusion translocation, missense, other 6890 CDC37L1::JAK2 ENSG00000106993.12::ENSG00000096968.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1203 TRUE 464 CDC37L1 ENSG00000106993.12 protein_coding + + chr9:4679559-4708399:+ chr9:4679899:+ chr9:4679559-4708399:+ chr9:4679899:+ JAK2 ENSG00000096968.14 protein_coding + + chr9:4984390-5129948:+ chr9:5044403:+ chr9:4984390-5129948:+ chr9:5044403:+ chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |FERM_F1_ubiquitin-like_domain(18%),FERM_F2_acyl-CoA_binding_protein-like_domain(100%),Jak1_pleckstrin_homology-like_domain(100%),Protein_kinase_domain(100%),SH2_domain(100%) |FERM_F1(0%),FERM_F2(100%),Jak1_Phl(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(100%) 0 2 2 189 70 ENST00000381854.4 ENST00000381652.4 downstream upstream none CTTCTGGCTCGGCGCAGCAGGTTCCATTCACGCCAAGTCTGTTGGCAGTGGCAGTTGTAGGGCCAAGGGCGGTTGTAGGACCCGGAGCAGCCGGACATGGAACAACCGTGGCCGCCTCCGGGACCCTGGAGCCTCCCTCGGGCC...GAAGAGAGTGACTTCGACGTGTTCCCCAGTTCTCCCCGCTGCCCGCAGCTGCCAGGCGGCGGCGCCCAG|ATTTTACTTTCCTCGTTGGTATTGCAGTGGCAGCAACAGAGCCTATCGGCATGGAATATCTCGAGGTGCTGAAGCTCCTCTTCTTGATGACTTTGTCATGTCTTACCTCTTTGCTCAG___TGGCGGCATGATTTTGTGCAtGGATGGATAAAAG EESDFDVFPSSPRCPQLPGGGAQ|illsslvlqwqqqslsawnisrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase JAK2 TK Jak O60674 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Janus kinase 2 1 Yes ALL, AML, MPN, CML leukaemia_lymphoma oncogene, fusion translocation, missense, other 6891 ACAP2::XXYLT1 ENSG00000114331.16::ENSG00000173950.16 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 679 FALSE NA FALSE NA ACAP2 ENSG00000114331.16 protein_coding - - chr3:195274745-195443044:- chr3:195381009:- chr3:194995474-195163773:- chr3:195101738:- XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195070111:- chr3:194789013-194991888:- chr3:194790840:- chr3:195366004 chr3:195136301 NA NA chr3:195086733 chr3:194857030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none BAR_domain_of_APPL_family(37%)|Glycosyl_transferase_family_8(59%) BAR_3(53%)|Glyco_transf_8(0%) 11 6 2 276 274 ENST00000326793.11 ENST00000310380.11 upstream downstream duplicates(2),mismatches(2) CAGCTTTGGAAGAAGTAGAAGGTGATGTGGCAGAATTGGAACTAAAACTTGATAAG___CTTGTGAAACTTTGTATTGCAATGATTGATACTGGAAAAGCCTTTTGTGTTGCAAATAAACAGTTCATGAATGGGATTCGAGACCTGGCTCAGTATTCTAGTAATGATGCTGTCGTTGAG___ACAAGTTTGACCAAGTTTTCTGACAGTCTTCAAGAAATGATAAATTTTCACACA|GCACACATTCTGGCAGTTCCGCCATGAGAACCCCCAGACCCGGGTTGGGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGACAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAGCTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGT ALEEVEGDVAELELKLDKLVKLCIAMIDTGKAFCVANKQFMNGIRDLAQYSSNDAVVETSLTKFSDSLQEMINFHT|ahilavpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Breast,Lung,Bladder exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6896 ENSG00000248802::ARHGEF38 ENSG00000248802.1::ENSG00000236699.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 681 TRUE 1205 TRUE 465 ENSG00000248802 ENSG00000248802.1 lncRNA - - chr4:128582999-128601407:- chr4:128601313:- chr4:129504154-129522562:- chr4:129522468:- ARHGEF38 ENSG00000236699.9 protein_coding + + chr4:105552620-105708093:+ chr4:105636403:+ chr4:106473777-106629250:+ chr4:106557560:+ chr4:128601059,chr4:128601061 chr4:105631633,chr4:105631626 NA NA chr4:129522214,chr4:129522216 chr4:106552790,chr4:106552783 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |RhoGEF_domain(34%),Variant_SH3_domain(100%) |PHD(100%),RhoGEF(15%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 12 4 25 1 ENST00000509360.1 ENST00000420470.3 upstream upstream duplicates(5),mismatches(2) CTGGCCCCAACACAGCTCGCTGGGCCAGACGTTGATGGGAAATGGCTGACAGCAGGATAAACAAGCAGCTtCCTTTTTGGTGAGCTTCAGGGGAATCAGGTGGACAGAATCAAGGCTTCAG|GAAAATATACATGCAAGA___AGGCAAACCAAACTTATTGGACATGGGCTCTTTGATGATCAAACCAATTCAACGTGTGATGAAATACCCCCTATTACTGTGCGAACTTCGGAATTCCACCCCTCCCTCTCACCCAGATTACAGAGCACTGGACGATGCCTTTGCTGCTGTGAAG...CAATGAACTTAAAAGAAGGAAAGATTTAGGTAGGAAGAGACATGATGAATTGGTTGTTTTCCATTATTGGAGTGTTTGCTTTATGTTTCTGAGAATCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6897 ENSG00000248802::ARHGEF38 ENSG00000248802.1::ENSG00000236699.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1205 TRUE 465 ENSG00000248802 ENSG00000248802.1 lncRNA - - chr4:128582999-128601407:- chr4:128601313:- chr4:129504154-129522562:- chr4:129522468:- ARHGEF38 ENSG00000236699.9 protein_coding + + chr4:105552620-105708093:+ chr4:105635600:+ chr4:106473777-106629250:+ chr4:106556757:+ chr4:128601059,chr4:128601061 chr4:105631633,chr4:105631626 NA NA chr4:129522214,chr4:129522216 chr4:106552790,chr4:106552783 NA NA sense sense unknown exon/splice-site intron inversion high none |RhoGEF_domain(34%),Variant_SH3_domain(100%) |PHD(100%),RhoGEF(17%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 7 4 25 25 ENST00000509360.1 ENST00000420470.3 upstream upstream duplicates(1),mismatches(1) CTGGCCCCAACACAGCTCGCTGGGCCAGACGTTGATGGGAAATGGCTGACAGCAGGATAAACAAGCAGCTtCCTTTTTGGTGAGCTTCAGGGGAATCAGGTGGACAGAATCAAGGCTTCAG|ATTTTCTGACCTATGACGCACAAAGCATATCTGGCAAATAAAATTTCCCTTTAGAAGAGGAAAGAAGGAAGCAT___GAAAATATACATGCAAGA___...AACACAGGAAAGAG...___AGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6899 BMP7::PRANCR ENSG00000101144.13::ENSG00000257815.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BMP7 ENSG00000101144.13 protein_coding - - chr20:57168753-57266641:- chr20:57265705:- chr20:55743809-55841697:- chr20:55840761:- PRANCR ENSG00000257815.9 lncRNA - - chr12:69901918-70243405:- chr12:69904419:- chr12:70295698-70637185:- chr12:70298199:- chr20:57257670,chr20:57257672 chr12:70046333,chr12:70046332 NA NA chr20:55832726,chr20:55832728 chr12:70440113,chr12:70440112 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none TGF-beta_propeptide(42%)| TGFb_propeptide(0%)| 5 8 2 439 21 ENST00000395863.8 ENST00000549419.6 upstream downstream mismatches(2) GACCTGTACAACGCCATGGCGGTGGAGGAGGGCGGCGGGCCCGGCGGCCAGGGCTTCTCCTACCCCTACAAGGCCGTCTTCAGTACCCAGGGCCCCCCTCTGGCCAGCCTGCAAGATAGCCATTTCCTCACCGACGCCGACATGGTCATGAGCTTCGTCAACCTCG|GTAACTGCCTCTCCACGGAGGAAAAAGGTCTTCACCCaGAACTCTTGGCGATGAACTGACCAAGTAAGGGATGAGGAGGAGGAGCTTCTCAAGAGTTCCTAGAGAAAGACGATGCCTGGGGAAGATAATGGCCAGTAGAGTTGGTGCCAGGGACTCTAGAAGGAAGAGGCTGGAGACATCCAAGAGAAATATGATCAGGAACTGGACTGAGACAGTGCTTGGAAGATGAGTGGGGAGACAGAAAGGAAAAGGCAAGCTCTGGAAGCTGACAAAGTAT DLYNAMAVEEGGGPGGQGFSYPYKAVFSTQGPPLASLQDSHFLTDADMVMSFVNL|gnclsteekglhpellamn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6902 GAS5::PAX9 ENSG00000234741.10::ENSG00000198807.13 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GAS5 ENSG00000234741.10 lncRNA - - chr1:173858559-173868882:- chr1:173865857:- chr1:173827697-173838020:- chr1:173834995:- PAX9 ENSG00000198807.13 protein_coding + + chr14:36657568-36679362:+ chr14:36666456:+ chr14:37126773-37148567:+ chr14:37135661:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon translocation medium none none none 0 5 0 36120 152 ENST00000702964.1 ENST00000402703.6 upstream upstream duplicates(2) GAGTCCAACTTGCCTGGACCAGCTTAATGGTTCTG|CtcCtGTGAGCGACAGCTCCCCCTACCACAGCCCCAAGGTGGAGGAGTGGAGCAGCCTGGGCCGCAACAACTTCCCCGCCGCCGCCCCGCACcCGGTGAACGGGTTGGAGAAGGGAGCCCTGGAGCAGGAAGCCAAGTACGGTCAG___GCACCAAATGGTCTCCCAGCTGTGGGCAGTTTTGTGTCAGCATCCAGCATGGCTCCTTACCCTACCCCAGCCCAAGTGTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6903 SYNJ2::ENSG00000291286 ENSG00000078269.15::ENSG00000291286.1 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYNJ2 ENSG00000078269.15 protein_coding + - chr6:157981863-158099176:+ chr6:158015358:- chr6:158402895-158520208:+ chr6:158436390:- ENSG00000291286 ENSG00000291286.1 lncRNA + + chr6:167146383-167178760:+ chr6:167168357:+ chr6:167559871-167592248:+ chr6:167581845:+ chr6:158014470,chr6:158014479 chr6:167168006,chr6:167167997 NA NA chr6:158435502,chr6:158435511 chr6:167581494,chr6:167581485 NA NA antisense sense unknown intron exon/splice-site inversion/3'-3' high none none none 2 10 0 5 29 unknown ENST00000539001.6 upstream upstream duplicates(4),inconsistently_clipped(1),low_entropy(1) CTAATCCTCAAATCCTATGCACAGAGCCCTTAAGGAGCTTTGGGCCCCAGAAGAACCCTTGGGCTGGATGGAACCATTTCTACATCATCATGGAG|AATGTTCAAACCAGAAGGCCCCTGGAAGACTGTGCCTGAAACGCGGCTAAGGCACCACCAGGCTGAACAGAAAACGGGGGCCTTATCAG...TTGCTGCAGGACGAGAATCTGGGGAAGATGCAGCgAAGAAAATGGCCTGGCCGGGCCGGGAAGAGCAGCCCACAGAGACCCGCAGCACAG...ATGAAAACATGTGGGTGGACCTGCTTTGATG...___GCACAGTCTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6915 TIAM2::SYNJ2 ENSG00000146426.19::ENSG00000078269.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1209 TRUE 466 TIAM2 ENSG00000146426.19 protein_coding + + chr6:154832697-155257723:+ chr6:154833409:+ chr6:155153831-155578857:+ chr6:155154543:+ SYNJ2 ENSG00000078269.15 protein_coding + + chr6:157981863-158099176:+ chr6:158028756:+ chr6:158402895-158520208:+ chr6:158449788:+ chr6:154878430,chr6:154878431 chr6:158021891,chr6:158021889 NA NA chr6:155199564,chr6:155199565 chr6:158442923,chr6:158442921 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF1866)_(100%),Endonuclease/Exonuclease/phosphatase_family(100%),SacI_homology_domain(95%) |DUF1866(100%),Exo_endo_phos(100%),Syja_N(74%) 3 1 1 295 59 ENST00000461783.7 ENST00000355585.9 downstream upstream duplicates(1) CCTGGGAGAGGCAAAGGGATAGGGATGACAGAGATTTTGATTTCTGCAGAGAAATGAATGGAAATCGTCTTGGACGAGACAGAATTCAAAACACTTGGGTT...TTAATGGTGAAAATACAGAGAGACATGCTCAGCCACCACCTATACCAGTACAGAATGATCCTGAACTTTATGAAAAACTGACATCTTCAAATGAAATAAACAAGGAGAAGAGTGACACAGTTGCTGATATAGAAAGTGAACCAGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAG|GTGGCACGTCTCTGAGCTTCCTGGTGTTGGTGACAGGCTGCACATCTGTGGGCAGAATTCCAGATGCTGAAATCTACAAAATCAC...AGGAGGAGGAACGCCTCATAGCTTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCATGGCCAAACGATGGGTCTCGCTTTGACCTGACTGTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6916 TIAM2::SYNJ2 ENSG00000146426.19::ENSG00000078269.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1209 TRUE 466 TIAM2 ENSG00000146426.19 protein_coding + + chr6:154832697-155257723:+ chr6:154860998:+ chr6:155153831-155578857:+ chr6:155182132:+ SYNJ2 ENSG00000078269.15 protein_coding + + chr6:157981863-158099176:+ chr6:158028756:+ chr6:158402895-158520208:+ chr6:158449788:+ chr6:154878430,chr6:154878431 chr6:158021891,chr6:158021889 NA NA chr6:155199564,chr6:155199565 chr6:158442923,chr6:158442921 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF1866)_(100%),Endonuclease/Exonuclease/phosphatase_family(100%),SacI_homology_domain(95%) |DUF1866(100%),Exo_endo_phos(100%),Syja_N(74%) 0 1 3 35 59 ENST00000461783.7 ENST00000355585.9 downstream upstream duplicates(1) GGCAGGTAATTCACACTTTTGGACAGAGCGCACCGCCCCCGTGGAATCACCCTACAGAAGAGGCCAGCTATAAAGGATGTCTCACACCTTTAAGATCAGTGTTTCTCAATGTGTGGACCATGGATACCTGTATTAGAATACCCAAAGGATTTGTTTAAAATTCAGGCTGAGCCCTTCCCAAG...CTAAAAGCTTTGGGAGTAGGTGGAGGAAACCTGCATCTTTACCCAGCAATCCAG|GTGGCACGTCTCTGAGCTTCCTGGTGTTGGTGACAGGCTGCACATCTGTGGGCAGAATTCCAGATGCTGAAATCTACAAAATCACTGCCACTGACTTTTAC...AAGGAGGAGGAACGCCTCATAGCTTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCATGGCCAAACGATGGGTCTCGCTTTGACCTGACTGTCCG...GCTTCCACACCCGTGGCGTGAACGACGACGGCCATGTGTCCAACTTCGTGGAGACAGAGCAG___ATGATTTACATGGACGATGGAGTGTCATCTTTTGTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1273c chr6:154853360-154853436:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6917 MAPK10::ENPP6 ENSG00000109339.24::ENSG00000164303.11 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAPK10 ENSG00000109339.24 protein_coding - - chr4:85990007-86594625:- chr4:86593910:- chr4:86911160-87515778:- chr4:87515063:- ENPP6 ENSG00000164303.11 protein_coding - - chr4:184088706-184221230:- chr4:184207090:- chr4:185009859-185142383:- chr4:185128243:- chr4:86573932 chr4:184208283 NA NA chr4:87495085 chr4:185129436 NA NA sense sense unknown 5'UTR/splice-site intron duplication high none |Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase(83%) |Phosphodiest(91%) 1 0 3 34 3 ENST00000641051.1 unknown upstream downstream none GACCGAGCGGCAGAGTTCCTAGCGCCTGCAGTGTGGTGAACTCCAACTTTTAGGCCAAGTTGAAAATGCAGCCGACGACCCCCACACTTCTAACTTCAGAATCAAAACTATGACCCTAGGGAGTGAGGAGGAGAGTGAAAAATGC|GCACCAAAGAACGTCGTGGCAGAGCTGAGATGGGGGAGCAGGCATCAGAGACCCCGTTCTCACACAGCAACTGGCCAGCGCCTAGGCGAGTAGGCATC...CTCACACAGTAACTGGCCAGGGCCTAAGCCTGCATCTTgGAGTGGCCAGAAGGTTGTGCGAGTGACCTGAGACCCAAGGATAGAGATCTCCCCAAGACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase 10 CMGC MAPK JNK P53779 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6922 ENSG00000248491::STPG2 ENSG00000248491.6::ENSG00000163116.10 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000248491 ENSG00000248491.6 lncRNA - - chr4:127094410-127470569:- chr4:127401726:- chr4:128015565-128391724:- chr4:128322881:- STPG2 ENSG00000163116.10 protein_coding - - chr4:97184093-98143476:- chr4:97187833:- chr4:98105244-99064627:- chr4:98108984:- chr4:127267788 chr4:97215498 NA NA chr4:128188943 chr4:98136649 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none none none 0 1 1 3 1 ENST00000504050.5 ENST00000522676.5 upstream downstream none CCAGGAATGCTGGTGGTGTAATTCAGTACAAGTCAGAAGACCTGGGAACCAGGGAGCTGATGGT___GCCCTCAGTGTATTGGATGATACCTGCCAATACTG|ATGAATAATACAGAGGAAAGCCCACGTGGACTGAGGACATACTACATGGAGCATGGAGGTGATAAGACCATTTCTTCAGGAATGACCAGAATAGCATAAAAGATCAATGGAAGCATTGCCAAAAAAGGAAGACTGAAATCTCAACCTTTCAGGGAGTAATTTATCATTTGGATGAGCCTAATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6932 GTF2H5::SYNJ2 ENSG00000272047.4::ENSG00000078269.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GTF2H5 ENSG00000272047.4 protein_coding + + chr6:158168350-158199344:+ chr6:158170538:+ chr6:158589382-158620376:+ chr6:158591570:+ SYNJ2 ENSG00000078269.15 protein_coding + - chr6:157981863-158099176:+ chr6:158015428:- chr6:158402895-158520208:+ chr6:158436460:- chr6:158191591,chr6:158191592 chr6:158016238,chr6:158016237 NA NA chr6:158612623,chr6:158612624 chr6:158437270,chr6:158437269 NA NA sense antisense stop-codon CDS/splice-site intron inversion/3'-3' medium none Transcription_factor_TFIIH_complex_subunit_Tfb5(17%)| Tfb5(0%)| 3 2 0 1123 6 ENST00000607778.2 unknown downstream downstream none CGCTTCTGCATCTGTGGGCCGAG___...AGCATTCTTCAGGTCATCTGAACCTTCTGAGAAAACATGGTCAACGTCTTGAAAGGAGTGCTTATAGAATG|AGCCCTTAAGGAGCTTTGGGCCCCAGAAGAACCCTTGGGCTGGATGGAACCATTTCTACATCATCATGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6950 SEMA4F::ENSG00000286739 ENSG00000135622.13::ENSG00000286739.2 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEMA4F ENSG00000135622.13 protein_coding + + chr2:74654228-74683853:+ chr2:74654521:+ chr2:74881355-74910980:+ chr2:74881648:+ ENSG00000286739 ENSG00000286739.2 lncRNA + + chr2:74715269-74805979:+ chr2:74754562:+ chr2:74942396-75033106:+ chr2:74981689:+ chr2:74655588 chr2:74733232 NA NA chr2:74882715 chr2:74960359 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 4 0 2 19 11 ENST00000611975.4 ENST00000690069.1 downstream upstream duplicates(3),mismatches(1) GAGAGGACCCGAGTGGGGCCGAGGCCAGTAGCCCCGGGGCCCTGAGCAGAGGCCGTAGCTTGCGCCGCACCCGCGGCCAGGCGGAGCCAAAGATGCCGGCCTCTGCTGCGCGGCCCCGCCCGGGTCCCGGGCAGCCTACAGCCTCGCCCTTCCCGCTACTGCTGCTGGCGGTGCTGAGCGGCCCGGTATCCGGCCGCGTCCCCCGCTCGGTGCCCAGAACCTCGCTTCCAATCTCTG|GCGCATCTCAATTCCGTGTGGCGGGCAAAAAATAAAGGAGCAGATTGTGACAGACCATTCCCATCGGCCATGCGGGCGAACCCAACGTCCTTTTACATTGAAGAACCC...CCTTTTACATTGCGGATGATGGACCGGCTCGTGtCGTCCATGAATTTCACGCGCACCTGTGTGCACTGTCCCTGAGAGCCGGTCCTGCCCAGGACCTTGGT MPASAARPRPGPGQPTASPFPLLLLAVLSGPVSGRVPRSVPRTSLPIS|gasqfrvagkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6951 DHX32::UROS ENSG00000089876.12::ENSG00000188690.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1215 TRUE 467 DHX32 ENSG00000089876.12 protein_coding - - chr10:125836337-125896436:- chr10:125859603:- chr10:127524906-127585005:- chr10:127548172:- UROS ENSG00000188690.15 protein_coding - - chr10:125784980-125823258:- chr10:125807487:- chr10:127473549-127511827:- chr10:127496056:- chr10:125856854,chr10:125856856 chr10:125811606,chr10:125811604 NA NA chr10:127545423,chr10:127545425 chr10:127500175,chr10:127500173 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Uroporphyrinogen-III_synthase_HemD(66%) |HEM4(65%) 2 1 3 106 356 ENST00000284690.4 ENST00000368797.10 upstream downstream duplicates(1),low_entropy(1) GTGAAAAATAAACACCCTGTGGAGGTTGTGTACCTTAGTGAGGCTCAAAAGGATTCTTTTGAGTCTATTTTACGCCTTATCTTTGAAATTCACCACTCGGGTGAGAAAGGTGACATTGTAGTCTTTCTGGCCTGTGAACAA|TGAGTAAAATTGGCCTGGATACAGAAGGAGAAACCTGTGGAAATGCAGAAAAGCTTGCAGAATATATTTGTTCCA___GGGAGTCCTCAGCACTGCCTCTTCTATTTCCCTGTGGAAACCTCAAAAGAGAAATCCTGCCAAAAGCGC VKNKHPVEVVYLSEAQKDSFESILRLIFEIHHSGEKGDIVVFLACEQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6952 DHX32::UROS ENSG00000089876.12::ENSG00000188690.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1215 TRUE 467 DHX32 ENSG00000089876.12 protein_coding - - chr10:125836337-125896436:- chr10:125866990:- chr10:127524906-127585005:- chr10:127555559:- UROS ENSG00000188690.15 protein_coding - - chr10:125784980-125823258:- chr10:125807487:- chr10:127473549-127511827:- chr10:127496056:- chr10:125856854,chr10:125856856 chr10:125811606,chr10:125811604 NA NA chr10:127545423,chr10:127545425 chr10:127500175,chr10:127500173 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Uroporphyrinogen-III_synthase_HemD(66%) |HEM4(65%) 0 1 1 148 356 ENST00000284690.4 ENST00000368797.10 upstream downstream none GTTAACATTGGTCATGAGGTTGGCTACGTGATCCCTTTCGAGAACTGCTGTACCAACGAAACAATCCTGAG|TGAGTAAAATTGGCCTGGATACAGAAGGAG...CCTGTGGAAATGCAGAAAAGCTTGCAGAATATATTTGTTCCA___GGGAGTCCTCAGCACTGCCTCTTCTATTTCCCTGTGGAAACCTCAAAAGAGAAATCCTG VNIGHEVGYVIPFENCCTNETILs|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6954 PPAT::CRACD ENSG00000128059.8::ENSG00000109265.15 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPAT ENSG00000128059.8 protein_coding - - chr4:56393362-56435615:- chr4:56435350:- chr4:57259528-57301781:- chr4:57301516:- CRACD ENSG00000109265.15 protein_coding + - chr4:56049098-56330609:+ chr4:56231027:- chr4:56915264-57196775:+ chr4:57097193:- chr4:56431485 chr4:56257210 NA NA chr4:57297651 chr4:57123376 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 3 0 1 865 6 ENST00000264220.6 unknown upstream downstream duplicates(1),mismappers(1),mismatches(1) GGAAGAGCCTGTCGCGAGCGCGAGCTTCTGAGCTCGACGGGCCGAGCTGGCAGCTGGTTGGTGCTTACACCTTGGCCGCAGCGGCAGGgCCTTCCACGTGCTTTCGGCGGCGgCATGG...GTTGGGGATCCGAGAGGAATGTGGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGCCCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCG|GACAACCAACCATATTAAATTCCACATATATATGGTGATCCAAGTCCATAAGCTACCTACCTGAAGACAGCTATGATGTTCAGAGG...TCTATGTCACAATACCTTGCACAAACTTATTTATGTTGTTATATTTTGTTGTAGTTGTAGGCTCACAGAAAATGAGAATTGAAAGAAATGCTGGAACCCAT LGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHr|ttnhikfhiymviqvhklpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6965 CNTN4::ENSG00000223727 ENSG00000144619.15::ENSG00000223727.6 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2988420:+ chr3:2140497-3099643:+ chr3:3030104:+ ENSG00000223727 ENSG00000223727.6 lncRNA - + chr3:3250687-3627296:- chr3:3478634:+ chr3:3292371-3668980:- chr3:3520318:+ chr3:3003403 chr3:3410692 NA NA chr3:3045087 chr3:3452376 NA NA sense antisense unknown CDS intron deletion/5'-5' low none Immunoglobulin_I-set_domain(95%),Immunoglobulin_domain(71%)| I-set(97%),Ig_2(99%),Ig_3(96%),ig(97%)| 0 0 2 5 1 ENST00000418658.6 unknown downstream upstream none GGGATATATTAAAAGAAAATGAAAG___AATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTAAATCAGACGCTGGGAGTTATACCTGTATA...|...CTTCTGGATTTCCTCCTTGATTATCTGTTGTATTAATATTAGTTCCTCTTGGGTTTCTCTGGGTAAAACCTTCCCTAATGTGGTCTGAAAATGGATCATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6966 TMEM144::IQCM ENSG00000164124.11::ENSG00000234828.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM144 ENSG00000164124.11 protein_coding + + chr4:158201604-158255416:+ chr4:158244349:+ chr4:159122756-159176568:+ chr4:159165501:+ IQCM ENSG00000234828.9 protein_coding - - chr4:149351709-149896233:- chr4:149815348:- chr4:150272861-150817385:- chr4:150736500:- chr4:158249705,chr4:158249706 chr4:149826574,chr4:149826574 NA NA chr4:159170857,chr4:159170858 chr4:150747726,chr4:150747726 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none Transmembrane_family__TMEM144_of_transporters(92%)| Sugar_transport(30%),TMEM144(77%)|IQ(100%) 1 1 0 8 1 ENST00000296529.11 ENST00000636793.2 downstream downstream none CCTACCAG___GATTCCTGTCAGGAGTACTTTGGGCTATAGCTACCTGCTGTTGGTTCATAGCAAATCACTCTCTGAGTGCTGTGGTCAGTTTTCCAATAATCACTGCT___GGTCCAGGATTTATAGCTGCAATGTGGGGTATCTTCATGTTTAAGGAAATAAAG|GAAGAAGAACAAATGACCTTGGAATGAAAAACTTTAAG...GCTAGGATTACCGGTGTGAGCCACCATGTCCAGCCCGTACTCTAACATTGTAATACCTGTGGGGAGGAAAAAGCAGCTGATCTATGACCGAGGGAGGAGTT LPGFLSGVLWAIATCCWFIANHSLSAVVSFPIITAGPGFIAAMWGIFMFKEIK|eeeqmtle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6988 ENSG00000262198::LINC00621 ENSG00000262198.2::ENSG00000262619.4 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000262198 ENSG00000262198.2 lncRNA + + chr13:22884163-22924602:+ chr13:22884295:+ chr13:23458302-23498741:+ chr13:23458434:+ LINC00621 ENSG00000262619.4 lncRNA - - chr13:22859050-22916369:- chr13:22896502:- chr13:23433189-23490508:- chr13:23470641:- chr13:22889421,chr13:22889250,chr13:22889249 chr13:22907497,chr13:22907000,chr13:22907001 NA NA chr13:23463560,chr13:23463389,chr13:23463388 chr13:23481636,chr13:23481139,chr13:23481140 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 51 115 95 3646 317 ENST00000686188.1 ENST00000668623.1 downstream downstream duplicates(75),mismatches(51) ACTCGTTGTCTGAGAGGTTTTGTCTGTGGCTCGTCCTGCTACATTTCTTGGTTCCCTGACAGGGAAACaAGGTGACTGATGGATGGCCGAGGCAGCCCCTTAGGCAGCTTAGGCCTGCCCCGCGGAGCATCCCTGCAGGGGACTCCGGCCAGCCTGAGTGACGCGATCCAAAGAGCGCTCCCGGTTAGGAAATTGCCCCCATTGGAACGCCTTGCCAGAGCAGCACGTAGCAGGCCCCCGTGGAGGATCCACACAGTGGCTGAACACTGGGAAGGAACTGGCGCTTGGAGTCTGGACATCTAAAAGTTG|ATGCAGTCTCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCATCTCCTGAGTTCAAGCAATTCTCCTGTCTCAGCCTCCTAAATAGTTGGAATTACAGGCAAGCACCACCACGCTCAG___CTACAGGAATTTAGCCAATTCAGAGGAAATCTTCCCCATAATTATGGAACTTTCTTACAGATTTTACCAAGTCTGGTCAACCCAATAAGAAAAAGACTGAAATAACAACAACAACTTCAACAAATAAAAAAAAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6991 LINC00621::ENSG00000262198 ENSG00000262619.4::ENSG00000262198.2 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1219 TRUE 468 LINC00621 ENSG00000262619.4 lncRNA - - chr13:22859050-22916369:- chr13:22894606:- chr13:23433189-23490508:- chr13:23468745:- ENSG00000262198 ENSG00000262198.2 lncRNA + + chr13:22884163-22924602:+ chr13:22908855:+ chr13:23458302-23498741:+ chr13:23482994:+ chr13:22889240,chr13:22889244 chr13:22907018,chr13:22907014 NA NA chr13:23463379,chr13:23463383 chr13:23481157,chr13:23481153 NA NA sense sense unknown exon/splice-site intron inversion high none none none 18 7 99 400 536 ENST00000668623.1 unknown upstream upstream duplicates(24),mismatches(9) CAGAATTTATGTGATTACTGGGTACTCTAATGGTAAGGAGAAATTAAGACCAGCTAGTTGTTAATCTTAACTTTTAGTCATTcAGGAGAATTTCCAAGACAAAACTGCAATCCAGCTGCTTACCTAGGAATACGGCTTAGGCTGAAAACTTCTATCGTCTTAGAAATGGGAATAAACCTCACACTCACCGTCCCTGTTGGAAGCAAGCTGAAACTCCAAAAAAAAAGTTGCCTGTTGTCCATCATCATGGTGAAGCGGCGTCGTTGTCTGGG|TTCTGGAGGCTGGGAAGTCCAAGGTCAAGATGCTGACAAATGATGAGAGCTTTCTTGCTGCATCCTCACATGGAAGAAGGTGGAAGGGCAAGAGAGAAGAAACTAATGCTAGGAAATGCCTCTTTTAAAAGGGACTTAGTCCCATTAACAAAGAAGCAGGTCTTATGGCCTAATCATCTCATAAAAGCACCACCTCTTAATACTATCACATTGGCAATACCTTGATTTTGGAGGGGACACATTCAAACCATAGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6992 LINC00621::ENSG00000262198 ENSG00000262619.4::ENSG00000262198.2 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1219 TRUE 468 LINC00621 ENSG00000262619.4 lncRNA - - chr13:22859050-22916369:- chr13:22894606:- chr13:23433189-23490508:- chr13:23468745:- ENSG00000262198 ENSG00000262198.2 lncRNA + + chr13:22884163-22924602:+ chr13:22916962:+ chr13:23458302-23498741:+ chr13:23491101:+ chr13:22889240,chr13:22889244 chr13:22907018,chr13:22907014 NA NA chr13:23463379,chr13:23463383 chr13:23481157,chr13:23481153 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 16 9 16 400 557 ENST00000668623.1 ENST00000686188.1 upstream upstream duplicates(12),mismatches(2) GAAATTAAGACCAGCTAGTTGTTAATCTTAACTTTTAGTCATTcAGGAGAATTTCCAAGACAAAACTGCAATCCAGCTGCTTACCTAGGAATACGGCTTAGGCTGAAAACTTCTATCGTCTTAGAAATGGGAATAAACCTCACACTCACCGTCCCTGTTGGAAGCAAGCTGAAACTCCAAAAAAAAAGTTGCCTGTTGTCCATCATCATGGTGAAGCGGCGTCGTTGTCTGGG|GAATAACATATTGACTTACTGAACTGAAGCATTCTGAGTTGAAAGGAGCCCCAGAGGAAAGGAGTTCTGTGTTGCTCACATGTTAAAAGCTTGCTCACCTTCAGAGCAGAGGGAATACCTATCTTCAGATATCCGCCCATTTTCATCTCTTCATTATAGTCAAACAGTGTGACTTGAGAGTGTTGCTCTGGTGTCTGTATTCTGGCTTATGAAGATTATTTGAAAAAGAACTCTTACTACATTGAAATGCAGACTTTTAAAAATTTAAATATTGGATTAGGCAGTCAAAAAACCAAACAAGCATAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6993 LINC00621::ENSG00000262198 ENSG00000262619.4::ENSG00000262198.2 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1219 TRUE 468 LINC00621 ENSG00000262619.4 lncRNA - - chr13:22859050-22916369:- chr13:22896361:- chr13:23433189-23490508:- chr13:23470500:- ENSG00000262198 ENSG00000262198.2 lncRNA + + chr13:22884163-22924602:+ chr13:22916962:+ chr13:23458302-23498741:+ chr13:23491101:+ chr13:22889240,chr13:22889244 chr13:22907018,chr13:22907014 NA NA chr13:23463379,chr13:23463383 chr13:23481157,chr13:23481153 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 2 0 553 557 ENST00000668623.1 ENST00000686188.1 upstream upstream duplicates(1) GCCTCCTAAATAGTTGGAATTACAGGCAAGCACCACCACGCTCAG|GAATAACATATTGACTTACTGAACTGAAGCATTCTGAGTTGAAAGGAGCCCCAGAGGAAAGGAGTTCTGTGTTGCTCACATGTTAAAAGCTTGCTCACCTTCAGAGCAGAGGGAATACCTATCTTCAGATATCCGCCCATTTTCATCTCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6994 PSMD14::MFSD11 ENSG00000115233.12::ENSG00000092931.12 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 684 FALSE NA FALSE NA PSMD14 ENSG00000115233.12 protein_coding + + chr2:161308425-161411717:+ chr2:161316569:+ chr2:162164936-162268228:+ chr2:162173080:+ MFSD11 ENSG00000092931.12 protein_coding + + chr17:76735865-76781449:+ chr17:76767386:+ chr17:74731947-74777531:+ chr17:74763468:+ chr2:161317441,chr2:161317442 chr17:76763630,chr17:76763628 NA NA chr2:162173952,chr2:162173953 chr17:74759712,chr17:74759710 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 29 41 49 975 236 ENST00000409682.8 ENST00000586622.5 downstream upstream duplicates(22),mismatches(4) TCGGGTGTGCGCCGCTGCTGCTGTTGCCTCTGTCTTCGCGTCACCACAGAGGCAAGACAAGGGTCCATATCGCGGCATCCGGCTCCCGCCCGTCTTCAG___GAGAGAAAGAAAAAATAAAATATACTTGGGGAAGTTGTACCTGCCAGAATTAGCAAGAGCTTTCTTTAAGAAGACATTTGTCAAACTCAACAAATTGAAGGTTAACACCTTAAGAGTTGTAGTTACTGACCAG|AAAAGTCTTTTAAGTTATGTGTCACCAAGGAGATGCTCCTTCTTAGTATTACAACTGCTTATACAG___GTCTGGAATTAACTTTCTTCTCTGGTGTATATGGAACCTGTATTGGTGCTACAAATAAATTTGGAGCAGAAGAGAAAAGCCTTATTGGACTTTCTGGCATTTTCATCGGCATTGGAGAAATTTTAG___GTGGAAGCCTCTTCGGCCTGCTGAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6995 CTTNBP2NL::LINC02884 ENSG00000143079.15::ENSG00000231246.3 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTTNBP2NL ENSG00000143079.15 protein_coding + + chr1:112396214-112463456:+ chr1:112416264:+ chr1:112938836-113006078:+ chr1:112958886:+ LINC02884 ENSG00000231246.3 lncRNA - + chr1:112176836-112360625:- chr1:112337286:+ chr1:112719458-112903247:- chr1:112879908:+ chr1:112426799,chr1:112426796 chr1:112337166,chr1:112337160 NA NA chr1:112969421,chr1:112969418 chr1:112879788,chr1:112879782 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cortactin-binding_protein-2(16%)| CortBP2(0%)| 27 18 39 208 57 ENST00000271277.11 unknown downstream upstream duplicates(23),mismatches(3),multimappers(2) CGTCGTGGAAAG___CATTGGACACATTTCCACCATGCTAATGGCATTTTAAATATATTTGGCAATTTTCCCAATTTTTTACTGAAGAAAACTGTAAGTTTATACTTGAGGACTGAAGTGTGACTCTGCCGATTATCAG___GCTTTCAAGATGAATCTGGAAAAACTCAGCAAGCCTGAACTCCTGACACTATTTAGTATTCTTGAAGGAGAGCTTGAAGCAAGGGACCTTGTTATAGAAGCCTTAAAG|AATTGGATCAAGAGAGCAAAGACCGATGATGCTGTTTTTGATGAGGTTCTCTGACCTCTCTGGAAGGTGACCAGGAAGGAAGTATCCCTTCTGAAGTTGATCGGGGTTCCTCTCTTCCTCTGCCAGAGAACAGCCGCTAGGGGAGAACATTGGTGTTCACGAGAACCTGGCGCTCCTCCCACGGAACCTGAGGGCTGGGCACGGTGGGAACTGCTAAATACAGCTAGAGGCACAGATTCTCC MNLEKLSKPELLTLFSILEGELEARDLVIEALK|nwikraktddavfdevl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6996 EEF1AKMT2::ABRAXAS2 ENSG00000203791.15::ENSG00000165660.8 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 685 FALSE NA FALSE NA EEF1AKMT2 ENSG00000203791.15 protein_coding - - chr10:124748149-124791887:- chr10:124774675:- chr10:126436718-126480456:- chr10:126463244:- ABRAXAS2 ENSG00000165660.8 protein_coding + + chr10:124801819-124836667:+ chr10:124828756:+ chr10:126490388-126525236:+ chr10:126517325:+ chr10:124774359,chr10:124774366 chr10:124827072,chr10:124827065 NA NA chr10:126462928,chr10:126462935 chr10:126515641,chr10:126515634 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Methyltransferase_domain(41%)| MTS(61%),Methyltransf_11(60%),Methyltransf_23(100%),Methyltransf_25(60%),Methyltransf_31(50%),Methyltransf_4(60%),PrmA(61%)| 16 13 24 389 344 ENST00000368836.7 ENST00000298492.6 upstream upstream duplicates(9),mismatches(1) TTGGGATGCTGTCTATGAGAGAGAACTGCAAACTTTCCGAGAATATGGAGATACAGGTGAAATCTG___GTTTGGAGAAGAGAGTATGAATCGACTAATAAGGTGGATGCAGAAACACAAGATTCCACTGGATGCTTCAGTGCTTGATATTGGAACTGGAAATGGTGTTTTCCTGGTTGAACTT___GCAAAATTTGGTTTCTCTAATATTACTGGAATTGATTACTCTCCTTCTGCAATTCAGCTTTCTGGAAGTATTATAGAAAAAGAAGGTTTATCTAACATTAAGTTAAAG|GTATAATCAGAGGATATCACTCGCTATTCCCAATCTAGGAAATACTAGCCAGCAAGAGTACAAAGTGTCTTCAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTGATTAAAGAACATGG___TACTGACTTTTTTGACAAGGATGGAGTGATGAAAGACATCAGGGCGATTTATCAGGTTTATAATGCACTTCAGGAGAAAGTTCAG___GCAGTGTGTGCAGATGTTGAAAAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAG WDAVYERELQTFREYGDTGEIWFGEESMNRLIRWMQKHKIPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 6997 ENSG00000258539::ABRAXAS2 ENSG00000258539.1::ENSG00000165660.8 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258539 ENSG00000258539.1 protein_coding - - chr10:124617080-124791727:- chr10:124774675:- chr10:126305649-126480296:- chr10:126463244:- ABRAXAS2 ENSG00000165660.8 protein_coding + + chr10:124801819-124836667:+ chr10:124828756:+ chr10:126490388-126525236:+ chr10:126517325:+ chr10:124774359,chr10:124774366 chr10:124827072,chr10:124827065 NA NA chr10:126462928,chr10:126462935 chr10:126515641,chr10:126515634 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none none MTS(61%),Methyltransf_11(60%),Methyltransf_23(100%),Methyltransf_25(60%),Methyltransf_31(50%),Methyltransf_4(60%),PrmA(61%)| 16 13 22 389 344 ENST00000494792.1 ENST00000298492.6 upstream upstream duplicates(7),mismatches(1) TTGGGATGCTGTCTATGAGAGAGAACTGCAAACTTTCCGAGAATATGGAGATACAGGTGAAATCTG___GTTTGGAGAAGAGAGTATGAATCGACTAATAAGGTGGATGCAGAAACACAAGATTCCACTGGATGCTTCAGTGCTTGATATTGGAACTGGAAATGGTGTTTTCCTGGTTGAACTT___GCAAAATTTGGTTTCTCTAATATTACTGGAATTGATTACTCTCCTTCTGCAATTCAGCTTTCTGGAAGTATTATAGAAAAAGAAGGTTTATCTAACATTAAGTTAAAG|GTATAATCAGAGGATATCACTCGCTATTCCCAATCTAGGAAATACTAGCCAGCAAGAGTACAAAGTGTCTTCAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTGATTAAAGAACATGG___TACTGACTTTTTTGACAAGGATGGAGTGATGAAAGACATCAGGGCGATTTATCAGGTTTATAATGCACTTCAGGAGAAAGTTCAG___GCAGTGTGTGCAGATGTTGAAAAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7000 APBA2::FMN1 ENSG00000034053.15::ENSG00000248905.10 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA APBA2 ENSG00000034053.15 protein_coding + + chr15:28884483-29118315:+ chr15:28995806:+ chr15:29129629-29410518:+ chr15:29288009:+ FMN1 ENSG00000248905.10 protein_coding - + chr15:32765544-33194714:- chr15:32904441:+ chr15:33057745-33486915:- chr15:33196642:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 9 5 9 188 59 ENST00000683413.1 unknown downstream upstream duplicates(3),mismatches(2) GCGCGGGCTCACAAAGAGCTCGGCCTCGCGGACTGAGCCGGCGGCAGCGGGGCGGGGACGGCGGCGTACCCGGGCAGCCCAGCGCCCTGGCCAG___TCTCCTGAATATTTACGCGTTGCTGAATCTCCTGTGGACAAACCACCAATAGGCCAGGACTGTCCTGTGGACAGACGGGGTGAGCCTCTTCTTGTGTCTGGAGATTCTGA___AAAGATTTGATCACCAGGAGATTTTTCGGGACATTACCAAACCACTCATTTTAG|AAAATCTCCATGGCAGCAGCTCAGCTGATTGGATGGGAGAGGAAATTTGAGGCTGGGAGACCTCCTAGACCACAGCTGTAATCTTCCAAGAGGAAAG___CATCTTCAGAG...___GGCTTGAGGAAGGTCTCTCTGTCTGTCTGGACGCACACATTTCTGAAGGTCTTTGGAGGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7001 CSNK1G2::TRAF7 ENSG00000133275.16::ENSG00000131653.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 686 TRUE 1220 TRUE 469 CSNK1G2 ENSG00000133275.16 protein_coding + + chr19:1941172-1981338:+ chr19:1941418:+ chr19:1941171-1981337:+ chr19:1941417:+ TRAF7 ENSG00000131653.14 protein_coding + + chr16:2155698-2178129:+ chr16:2175111:+ chr16:2205699-2228130:+ chr16:2225112:+ chr19:1953628,chr19:1953622 chr16:2174250,chr16:2174235 NA NA chr19:1953627,chr19:1953621 chr16:2224251,chr16:2224236 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |WD_domain__G-beta_repeat(61%) |WD40(32%) 1 22 0 114 743 ENST00000255641.13 ENST00000326181.11 downstream upstream duplicates(5),mismatches(1) GGGGGTCCGCGCTGCGCTGCTGAGGCCGGGCCGGCCGCCCAGACGCTGCCCGCGGGCCCGGCCACGGCGGAGCCAAG|GTGCAAACTCTACAGCGGCTCTGCAGACTGCACCATCATT___GTGTGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCGGTGTGCACGCTGGTCTCCTCACACAACGTGCTCTTCAGCGGCTCCCTGAAGGCCATCAAG___GTCTGGGACATCGTGGGCACTGAGCTGAAGTTGAAGAAGGAGCTCACAGGCC...AATCAAG___ATCTGGGACATCCGAACCCTTGACTGCATCCACGTCCTGCAGACGTCTGGTGGCAGCGTCTACTCCATTGCTGTGACAAATCACCACATTGTCTGTGGCACCTACGAGAACCTCATCCAC___GTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Casein kinase I isoform gamma-2 CK1 CK1 P78368 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tumour necrosis factor receptor-associated factor 7 1 Yes meningioma other TSG missense 7002 CSNK1G2::TRAF7 ENSG00000133275.16::ENSG00000131653.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1220 TRUE 469 CSNK1G2 ENSG00000133275.16 protein_coding + + chr19:1941172-1981338:+ chr19:1941418:+ chr19:1941171-1981337:+ chr19:1941417:+ TRAF7 ENSG00000131653.14 protein_coding + + chr16:2155698-2178129:+ chr16:2175301:+ chr16:2205699-2228130:+ chr16:2225302:+ chr19:1953628,chr19:1953622 chr16:2174250,chr16:2174235 NA NA chr19:1953627,chr19:1953621 chr16:2224251,chr16:2224236 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |WD_domain__G-beta_repeat(52%) |WD40(21%) 0 1 0 114 868 ENST00000255641.13 ENST00000326181.11 downstream upstream none GCGCTGCTGAGGCCGGGCCGGCCGCCCAGACGCTGCCCGCGGGCCCGGCCACGGCGGAGCCAAG|GTGTGGGACATCCAGAACCTGCAGAAGGTGAACACCA...TCTGGGACATCGTGGGCACTGAGCTGAAGTTGAAGAAGGAGCTCACAGGCCTCAACCACTGGGTGCGGGCCCTGGTGGCTGCCCAGAGCTACCTGTACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Casein kinase I isoform gamma-2 CK1 CK1 P78368 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tumour necrosis factor receptor-associated factor 7 1 Yes meningioma other TSG missense 7003 MIR137HG::DPYD ENSG00000225206.12::ENSG00000188641.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1221 FALSE NA MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:98046008:- chr1:98399030-98515427:- chr1:98511564:- DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97450223:- chr1:97543299-98460556:- chr1:97915779:- chr1:98015913 chr1:97472437 NA NA chr1:98481469 chr1:97937993 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |4Fe-4S_dicluster_domain(100%),Dihydroorotate_dehydrogenase(84%) |DHO_dh(79%),Dus(100%),Fer4_21(100%) 1 14 5 53 172 ENST00000424528.2 ENST00000370192.8 upstream downstream duplicates(2),mismappers(1),mismatches(1) CAGCGGTAGCAGCGGCAGCGGCAGCTTGGTCCTCTGACTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGATTACGTTGTTATTGCTTAAGAATACGCGTAGTCGAGGAGAGTACCAGCGGCAGGGGGGCAGCGGCCGCCCTCCCCAGCCCACCAGCTGGCCACTAAACGCCCGTGGTTGCCAAG|GACATTGTGACAAATGTTTCCCCCAGAATCATCCGGGGAACCACCTCTGGCCCCATGTATGGCCCTGGACAAAGCTCCTTTCTGAATATTGAGCTCATCAGTGAGAAAACGGCTGCATATTGGTGTCAAAGTGTCACTGAACTAAAGGCTGACTTTCCAGACAAC___ATTGTGATTGCTAGCATTATGTGCAGTTACAATAAAAATGACTGGACGGAACTTGCCAAGAAGTCTGAG___GATTCTGGAGCAGATGCCCTGGAGTTAAATTTATCATGTCCACATGGCATGGGAGAAAGAGGAATGGGCCTGGCCTGTGGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-137 chr1:98046070-98046171:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7005 MLLT10::SORCS3 ENSG00000078403.17::ENSG00000156395.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21595440:+ chr10:21813575-22032559:+ chr10:21884369:+ SORCS3 ENSG00000156395.14 protein_coding + - chr10:104641290-105265242:+ chr10:105244584:- chr10:106401048-107025000:+ chr10:107004342:- chr10:21611005,chr10:21611003,chr10:21611005,chr10:21611016 chr10:105259467,chr10:105259467,chr10:105259468,chr10:105259468 NA NA chr10:21899934,chr10:21899932,chr10:21899934,chr10:21899945 chr10:107019225,chr10:107019225,chr10:107019226,chr10:107019226 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none PHD-finger(100%),PHD-zinc-finger_like_domain(47%)| PHD(100%),PHD_2(100%),zf-HC5HC2H(0%),zf-HC5HC2H_2(31%)| 6 3 10 111 7 ENST00000631589.1 unknown downstream downstream duplicates(2),mismatches(4) AGTG___AGATGTGAACTTTGTCCCCATAAGGATGGAGCTTTAAAAAGAACAGATAATGGGG___GTTGGGCCCATGTGGTTTGTGCCCTGTATATTCCAGAGGTACAATTTGCCAATGTTTCCACAATGGAACCAATTGTTTTACAGTCTGTTCCGCATGATCGTTATAATAAG|GAAGTTCTCAAGGATGAAGACAGAAATAGAATGCAGATATACCTCAGAATTCACAGAGGATTGGTTCCAGGACCGCTGTGTATACAAAAATCCATGCATACTCCAATCCCACTGTAGACCCTCCATATCTGCAG___...ATATGGAGGGCTGACTGTATTTCTTGAAAAAAAACAACCCACATATAAGTGGACC...TTTCAAACCCTTGTTGTTCAAGGGTCAGCTCTAATTATAT...___CAaACTGAACACAGCTGAGGAA?AATCTCTGAGCcTGAaAACATCTCAACAGAAAATGCCAAAACTGAAAAagAAAAACAACAAAAAaTAAAAAAAAAAAAAGGAAAAG VRCELCPHKDGALKRTDNGGWAHVVCALYIPEVQFANVSTMEPIVLQSVPHDRYNK|evlkdedrnrmqiylrihrglvpgplciqksmhtpipl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7006 TBL1X::HCCS-DT ENSG00000101849.18::ENSG00000234129.10 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9711776:+ chrX:9431360-9709077:+ chrX:9679816:+ HCCS-DT ENSG00000234129.10 lncRNA - + chrX:10847578-11111220:- chrX:10927770:+ chrX:10865697-11129340:- chrX:10945890:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none LisH(100%),WD_domain__G-beta_repeat(100%)| ANAPC4_WD40(66%),LisH(100%),PD40(100%),WD40(100%)| 8 5 5 324 16 ENST00000407597.7 unknown downstream upstream duplicates(2),mismatches(2) CAAA___ACAACAATAATTTGGGATGCCCACACAGGAGAAGCCAAACAGCAGTTTCCTTTTCATTCAG___CCCCTGCCCTTGATGTGGACTGGCAGAACAACACGA...GAAACAGGAGGctTGCATCCATGATCTTgAGGCTCACAATAAAGtGATCTACACCATCAAGTGGAGCCCCACTGGGCCCGCCACCAGCAACCCAAACTCCAACATCATGTTGGCAAG___TGCTTCGTTTGATTCTACGGTGCGACTGTGGGACATAGAACGAGGCGTCTGCACCCACACGCTCACGAAGCATCAGGAGCCTGTCTATAGCGTAGCTTTCAGCCCTGATGGGAAGTACTTGGCCAGTGGATCCTTCGACAAGTGCGTCCATATCTGGAATACTCAG|GGCTTCAACATGAGAACCTGGGGTGGAGGACACAAACATTTGGTTCATAACATCTGACATGGCTTTCTTGAGACCAGAACCAGCTCATGAAAAGAGTCCAATCAG___ATGAAAATGCTAAAGCTTGGAGAGTTTGAACCCCTTGCCTGAGGTCCTCAAGTGGTGGAGCTGGAATTC KQEaCIHDLeAHNKvIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQ|gfnmrtwggghkhlvhni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7007 BCL7A::CFAP251 ENSG00000110987.9::ENSG00000158023.10 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 687 FALSE NA FALSE NA BCL7A ENSG00000110987.9 protein_coding + + chr12:122019422-122062044:+ chr12:122035427:+ chr12:122457328-122499950:+ chr12:122473333:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121948984:+ chr12:122356498-122441833:+ chr12:122386890:+ chr12:122037704,chr12:122037702 chr12:121946200,chr12:121946195 NA NA chr12:122475610,chr12:122475608 chr12:122384106,chr12:122384101 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BCL7__N-terminal_conserver_region(100%)| BCL_N(100%)| 9 2 7 338 45 ENST00000538010.5 ENST00000288912.9 downstream upstream duplicates(4),low_entropy(1),mismatches(2) GCGCTCCCCAGCCTCCGTCTCCCCGCCGGAACCATGTCGGGCAGGTCGG?TCGAGCCGAGACGAGGAGCCGGGCCAAAGATGATATCAAGAGGGTCATGGCGGCGATCGAGAAAGTGCGCAAATG___GGAGAAGAAATGGGTGACCGTTGGTGACACATCCCTACGAATCTACAAATGGGTCCCTGTGACGGAGCCCAAGGTTGATGAC___AAAAACAAGAATAAGAAAAAAGGCAAGGACGAGAAGTGTGGCTCAGAGGTGACCACTCCGGAGAACAGTTCCTCCCCAGGGATGATGGACATGCATG|AACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTAAAACACGGGCAATATATTATGCATGG___ACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAATTTAACACAAATACT MSGRS?RAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKNKNKKKGKDEKCGSEVTTPENSSSPGMMDMH|elryf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE B-cell CLL/lymphoma 7A 1 BNHL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7010 CMTR1::DAB1 ENSG00000137200.13::ENSG00000173406.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CMTR1 ENSG00000137200.13 protein_coding + + chr6:37433219-37482827:+ chr6:37463008:+ chr6:37400995-37450603:+ chr6:37430784:+ DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:58277672:- chr1:57460451-59012406:- chr1:58743344:- chr6:37466243,chr6:37466244 chr1:58360799,chr1:58360798 NA NA chr6:37434019,chr6:37434020 chr1:58826471,chr1:58826470 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none FtsJ-like_methyltransferase(100%),G-patch_domain(100%)|Phosphotyrosine_interaction_domain_(PTB/PID)(100%) FtsJ(100%),G-patch(100%)|PID(100%) 6 2 6 323 22 ENST00000373451.9 unknown downstream downstream duplicates(1) CACCCGCCCAGAGAACATCTCTGCTTTTCGGAATTTTGTCCTGGATAACACAGATCGCAAGGGTGTCCATTTTCTGATGGCTGATGGG___GGTTTCTCGGTGG...GGAGAACCTGCAGGAGATCCTCAGCAAGCAGCTGCTTCTGTGTCAGTTCCTCATGGCGCTGTCCATTGTCCGGACAG___GAGGCCACTTCATCTGTAAAACCTTTGACCTGTTCACACCGTTTAGTGTGGGGCTTGTCTACCTGCTGTACTGCTGCTTTGAACGAGTTTGTCTCTTCAAtCCT...GCCAACTCAGAGAG___GTATGTGGTGTGCAAGGGCCTGAAGGTGGGCATAGATGATGTTCGGGATTACCTCTTCGCAGTGAATATTAAACTCAATCAGCTGCGGAACACGGATTCCGACGTCAACTTGGTGGTCCCCCTGGAGGTGATCAAGGGAGACCATGAATTTACTGACTACATGATACGGTCCAATGAGAG|ACCATGGTTTCCACCACAGCAGGGATCTGGCTGTATTCATGACTGAGTTCCCAGAGCAATGGCACCACCCTTAGGAGATTCTGACTGAGTGAATGAAAGAGGAAGGATTGAATTCAAGTGGATCCGAGCATGACCTTGCCAGCTCTGTGTGTTGGGAACTGAGCATCAGAGGCAACAGAAGT ANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVPLEVIKGDHEFTDYMIRSNEr|pwfppqqgsgcihd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7012 DIP2C::SFMBT2 ENSG00000151240.18::ENSG00000198879.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE FALSE TRUE 688 TRUE 1222 TRUE 470 DIP2C ENSG00000151240.18 protein_coding - - chr10:274201-689668:- chr10:689494:- chr10:320141-735608:- chr10:735434:- SFMBT2 ENSG00000198879.13 protein_coding - - chr10:7158624-7411488:- chr10:7285954:- chr10:7200586-7453450:- chr10:7327916:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none DMAP1-binding_Domain(12%)|SAM_domain_(Sterile_alpha_motif)(100%),SLED_domain(100%),mbt_repeat(75%) DMAP_binding(0%)|MBT(13%),SAM_1(100%),SAM_2(100%),SAM_PNT(100%),SLED(100%) 0 2 9 39 13 ENST00000280886.12 ENST00000682896.1 upstream downstream duplicates(2),mismatches(1) CGCCGGGCGCGAGGAGCCGCCGAGACCTCCGCCTGCGAACAAAGAGGAGGCCGTGCGGGGCGCGGCGCCCGCGGAGCATGGCGGACCGCAGCCTGGAGGGCATGGCGCTGCCCCTGGAGGTGCGGGCGCGCCTGGCCGAGCTGGAGCTGGAGCTGTCGGAAG|CAATCAAAGAGAAGTACACAGACTGGACAGAATTTCTCATACGTGACTTGACTGGTTCGAGGACAGCACCCGCCAACCTCCTGGAAGGT___ACTTCGACCAGTTGGTTGGTGTCAAGAGAATAAATACAGAATGGACCCACCTTCA...AAATTTCCTCTTCCAATGGAAGTGTTTAAG___GATCACGCAGATTTGCGAAGCCATTTCTTCACAGTTGGGATGAAGCTTGAGACAGTGAATATGTGCGAGCC MADRSLEGMALPLEVRARLAELELELSE|aIKEKYTDWTEFLIRDLTGSRTAPANLLEGTSTSWLVSRE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7013 DIP2C::SFMBT2 ENSG00000151240.18::ENSG00000198879.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1222 TRUE 470 DIP2C ENSG00000151240.18 protein_coding - - chr10:274201-689668:- chr10:689494:- chr10:320141-735608:- chr10:735434:- SFMBT2 ENSG00000198879.13 protein_coding - - chr10:7158624-7411488:- chr10:7227937:- chr10:7200586-7453450:- chr10:7269899:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none DMAP1-binding_Domain(12%)|SAM_domain_(Sterile_alpha_motif)(100%),SLED_domain(100%),mbt_repeat(25%) DMAP_binding(0%)|MBT(2%),SAM_1(100%),SAM_2(100%),SAM_PNT(100%),SLED(100%) 1 0 0 39 23 ENST00000280886.12 ENST00000397167.6 upstream downstream none CCTCGGTGCGGTTCCGCCGGGCGCGAGGAGCCGCCGAGACCTCCGCCTGCGAACAAAGAGGAGGCCGTGCGGGGCGCGGCGCCCGCGGAGCATGGCGGACC...GGAGCTGGAGCTGTCGGAAG|GTTACTCTGGCCAGGACTTCGACTGGGCAGATTATCACAAGCAGCATGGGGCGCAGGAAGCCCCTCCCTTCTGCTTCCGAA ELELSE|gYSGQDFDWADYHKQHGAQEAPPFCFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7014 ZDHHC18::PIGV ENSG00000204160.12::ENSG00000060642.12 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 689 TRUE 1223 TRUE 471 ZDHHC18 ENSG00000204160.12 protein_coding + + chr1:26826688-26857604:+ chr1:26853825:+ chr1:27153179-27184095:+ chr1:27180316:+ PIGV ENSG00000060642.12 protein_coding + + chr1:26787054-26800659:+ chr1:26790759:+ chr1:27113545-27127150:+ chr1:27117250:+ chr1:26856990,chr1:26856986 chr1:26788309,chr1:26788302 NA NA chr1:27183481,chr1:27183477 chr1:27114800,chr1:27114793 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site duplication high none DHHC_palmitoyltransferase(100%)|Mannosyltransferase_(PIG-V)(100%) DHHC(100%)|Mannosyl_trans2(100%) 1 3 7 384 80 ENST00000488397.3 ENST00000674202.1 downstream upstream duplicates(1),mismatches(1) CCGAACCTCACACTGCAGTGTCTGCGACAACTGTGTGG___AACGATTTGACCATCACTGCCCCTGGGTGGGCAACTGTGTGGGGAGACGGAACTATCGCTTCT...GTGAGGCCTCTGTCAACCCCTACAGCCATAAAAGTATTATCACCAACTGCTGTGCTGTGCTCTGTGGCCCCCTACCTCCCAG___CCTAATTGACCGGAGGGGATTTGTGCAGTCCGACACCGTGTTGCCCTCACCCATCAGAAGCGATGAGCCAGCCTGCAGAGCCAAGCCTGATGCCAGCATG|AGGCCTGAGGGAGCTCAATCCTGGTAGCAACACCCCTGAATTCCTGGTGGTGAAAGGATGTGGCCCCAGGACCCATCCCGGAAGGAGGTGCTGAGGTTTGCAGTCAGCTGCCGTATCCTGACTCTGATGCTGCAG___GCCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGC...GAACACTTCTTGTTCATTGCTGAGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTTCCTGGTTTCCCCTTGGCCCTGCTGGTGGGGACTGAACTGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7015 ZDHHC18::PIGV ENSG00000204160.12::ENSG00000060642.12 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1223 TRUE 471 ZDHHC18 ENSG00000204160.12 protein_coding + + chr1:26826688-26857604:+ chr1:26853825:+ chr1:27153179-27184095:+ chr1:27180316:+ PIGV ENSG00000060642.12 protein_coding + + chr1:26787054-26800659:+ chr1:26794113:+ chr1:27113545-27127150:+ chr1:27120604:+ chr1:26856990,chr1:26856986 chr1:26788309,chr1:26788302 NA NA chr1:27183481,chr1:27183477 chr1:27114800,chr1:27114793 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none DHHC_palmitoyltransferase(100%)|Mannosyltransferase_(PIG-V)(96%) DHHC(100%)|Mannosyl_trans2(53%) 0 1 5 384 73 ENST00000488397.3 ENST00000674202.1 downstream upstream duplicates(1) CTGTGGCCCCCTACCTCCCAG___CCTAATTGACCGGAGGGGATTTGTGCAGTCCGACACCGTGTTGCCCTCACCCATCAGAAGCGATGAGCCAGCCTGCAGAGCCAAGCCTGATGCCAGCATG|GCCCTCTTCAATGCCATCATCCCAGATCACCATGCAGAAGCCTTCTCTCCTCCTCGCCTGGCCCCCTCAGGCTTTGTGGACCAACTCGTGGAAGGTCTTCTGGGCGGCCTGTCTCACTGGGATGCTGAACACTTCTTGTTCATTGCTGAGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTTCCTGGTTTCCCCTTGGCCCTGCTGGTGGGGACTGAACTGTTGAGACCCTTACGGGGGTTACTGAGTCTAC...GAAATGAACCGCCTTGGTGCTTCTGGGATGTTCCACTAATATACAGCTATATCCAGGATGTCTACTGGAATGTTGGCTTTTTGAAATACTATGAGCTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7016 SPAG1::VPS13B ENSG00000104450.13::ENSG00000132549.20 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 690 FALSE NA FALSE NA SPAG1 ENSG00000104450.13 protein_coding + + chr8:100157906-100259278:+ chr8:100213428:+ chr8:101170134-101271506:+ chr8:101225656:+ VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99835197:+ chr8:100025494-100889808:+ chr8:100847425:+ chr8:100213812,chr8:100213811 chr8:99833934,chr8:99833930 NA NA chr8:101226040,chr8:101226039 chr8:100846162,chr8:100846158 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Tetratricopeptide_repeat(46%)|Vacuolar-sorting-associated_13_protein_C-terminal(100%) TPR_8(27%)|VPS13_C(100%) 1 8 1 83 136 ENST00000251809.4 ENST00000357162.7 downstream upstream duplicates(3) GGCGGCGGCGCCACCGGGCATCCGGGCGGCGGGCAGGGCGCGGAGAACCCTGCgGGCCTGAAGAGCCAGGGCAACGAGCTGTTCCGAAGCGGGCAGTTCGCCGAGGCGGCCGGCAAGTACTCGGCGGCAATCGCGCTCCTGGAGCCAGCAG|GGCTATAGTGCTGACATATCAAGAACACCTCGGAGTGACTTATTTAACCCTCTCAGAAGACCCTAGTCCTCGAGTAATTATCCACAATAGATGTCCAGTAAAAATGCTTATAAAGGAAAACATTAAAG___ATATTCCAAAGTTTGAGGTTTATTGCAAAAAAATTCCCTCCGAGTGCTCAATTCATCATGAGCTGTATCATCAGATTTCCAGTTATCCGGACTGCAAGACCAAAGACTTACTTCCAAGCCTACTTTTGAGAGTTGAACCTCTAGATGAA...CAGGTTGgGTTCCTGACTGGCTTTGGCTATGTGTATGTGGATGTTGTACATCAGTGTGGCACAGTCTTCATCACTGTGGCCCCAGAAGGAAAAGCAGGA GGGATGHPGGGQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPA|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7017 ZNF619::ADAMTS9 ENSG00000177873.14::ENSG00000163638.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1224 TRUE 472 ZNF619 ENSG00000177873.14 protein_coding + + chr3:40477113-40491053:+ chr3:40482704:+ chr3:40518604-40532544:+ chr3:40524195:+ ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64658791:- chr3:64501330-64673676:- chr3:64644467:- chr3:40485216,chr3:40485212 chr3:64669447,chr3:64669451 NA NA chr3:40526707,chr3:40526703 chr3:64655123,chr3:64655127 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none KRAB_box(100%)|ADAM-TS_Spacer_1(100%),ADAMTS_cysteine-rich_domain_2(100%),GON_domain(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(100%),Thrombospondin_type_1_domain(100%) KRAB(100%)|ADAM_CR_2(100%),ADAM_CR_3(100%),ADAM_spacer1(100%),GON(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_5(100%),TSP1_ADAMTS(100%),TSP_1(100%) 3 1 6 32 322 ENST00000522736.5 ENST00000498707.5 downstream downstream duplicates(2),mismatches(1) GCTCCGCAGGTTCTTACTTTTcCAAACCTAGAGGGCAGTGCATGAAGCCAGGGGTCATCAGCCATGCTCCcGACAGTGTGGTTCCAG___GGCTTGGGCgGGA...CCCAGAATGAATGGGCCAGCCTGCACCCTACGCAGAGGGCCCTATACAGGGAGGTGATGCTGGAGAATTATGCAAATGTGACTTCCTTGT___CAGCATTTCCATTCCCCAAACCAGAaCTGATATTCCAGCTG...CAAGGAGAAGCAGCATGGGGCCCAGATCCCTGGACACTTGCTGGGGGAGAGGCCCTGAGAGGCATGTGCACAG|AACACAAAAATAGGCACAGTAAAGACAAGAAGAAAACCAGAGCAAGAAAATGGGGAGAAAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGTAATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGGTGGTGGCAGACAACAGAATGGTTTCATACCATGG RRSSMGPRSLDTCWGRGPERHVHr|tqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7018 ZNF619::ADAMTS9 ENSG00000177873.14::ENSG00000163638.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1224 TRUE 472 ZNF619 ENSG00000177873.14 protein_coding + + chr3:40477113-40491053:+ chr3:40478003:+ chr3:40518604-40532544:+ chr3:40519494:+ ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64658791:- chr3:64501330-64673676:- chr3:64644467:- chr3:40485216,chr3:40485212 chr3:64669447,chr3:64669451 NA NA chr3:40526707,chr3:40526703 chr3:64655123,chr3:64655127 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |ADAM-TS_Spacer_1(100%),ADAMTS_cysteine-rich_domain_2(100%),GON_domain(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(100%),Thrombospondin_type_1_domain(100%) |ADAM_CR_2(100%),ADAM_CR_3(100%),ADAM_spacer1(100%),GON(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_5(100%),TSP1_ADAMTS(100%),TSP_1(100%) 1 0 4 25 322 ENST00000456778.5 ENST00000498707.5 downstream downstream mismatches(1) CAGGCTTTGGGCCCTTGCAGAGGTCGCCGAGGGGCCCGCGCCGCCGCCAGAGCCTGGGCCCAGTCCCCAGTCTTCAGAGACGCCCTCGACCTTCCTGCTCCGAGGAGCTGGCCTGATGTCCTCGGGTCGCG___CTCCGCAGGTTCTTACTTTTcCAAACCTAGAGGGCAGTGCATGAAGCCAGGGGTCATCAGCCATGCTCCAGACAGTGTGGTTCCAG|AACACAAAAATAGGCACAGTAAAGACAAGAAGAA...ATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGTAATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGG MKPGVISHAPDSVVP|eHKNRHSKDKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7021 TMEM170B::ENSG00000247925 ENSG00000205269.6::ENSG00000247925.2 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM170B ENSG00000205269.6 protein_coding + + chr6:11537749-11583524:+ chr6:11538374:+ chr6:11537982-11583757:+ chr6:11538607:+ ENSG00000247925 ENSG00000247925.2 lncRNA + + chr6:11173452-11259099:+ chr6:11258489:+ chr6:11173685-11259332:+ chr6:11258722:+ chr6:11543764,chr6:11543764 chr6:11257276,chr6:11257273 NA NA chr6:11543997,chr6:11543997 chr6:11257509,chr6:11257506 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Putative_transmembrane_protein_170(5%)| Tmemb_170(0%)| 0 3 3 18 13 ENST00000379426.2 ENST00000500636.2 downstream upstream none GCCGCCCGGCACCCGAGGAGAGGGCGGCGGGCGCCCCTCGGGGAAGATGAAGGCGGAGGGGGGCGACCAtTCCATGATCAACCTGTCGGTGCAGCAGGTCCTGAGCCTCTGGGCCCACGGGACGGTGCTGAGGAACCTCACGG|GTCACTCAGCTATTGGTCTGAAGAAGCCTTTTTTTTTTCTATTTGGCCTTCTTTGGAAGCCAATTTATCGTCTGAGTTCTTCTCCTGTAATCTGAACTACAGGTTGCAGGTTCTGAACTACCTGAAGCCATGCAAG...CTCTTTCCTTCAAGTGAGTGTGAAGCTGAGAGGGGTCATTAAACTCCCCCAGAGGGTAATGTCCATTGGGTTGAAGGACACAAAGCCATAAACTTGTCAGA MKAEGGDHSMINLSVQQVLSLWAHGTVLRNLT|ghsaiglkkpffflfgllwkpiyrlssspvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7022 FSD1L::SLC44A1 ENSG00000106701.13::ENSG00000070214.17 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FSD1L ENSG00000106701.13 protein_coding + + chr9:105447796-105552433:+ chr9:105539351:+ chr9:108210077-108314714:+ chr9:108301632:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105299220:+ chr9:108006903-108201452:+ chr9:108061501:+ chr9:105541266,chr9:105541263 chr9:105247163,chr9:105247157 NA NA chr9:108303547,chr9:108303544 chr9:108009444,chr9:108009438 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SPRY_domain(99%)|Plasma-membrane_choline_transporter(100%) SPRY(37%)|Choline_transpo(100%) 1 2 2 16 124 ENST00000481272.6 ENST00000374724.1 downstream upstream duplicates(1) CTGTAGGCTCCAGGCCACCAGCAGTAAGAGGCAGTAGAGATCGTTTTACTGGAGAATCATACACAGTGCTGG___GTCAACTTTCATTCTATGATGCAAATTCTAAACAGTTGCTATATTCCTTTAAGACAAAATTTACTCAGCCAGTACTACCTGGTTTCATG|AGCTCCAAACGAGAATGGAAGCCGCTGGAGGACCGTAGCTGCACAGACATACCATGGC...ATATCTGTGGGCAGAAAAATACAAAGTTGGAAGCAATACCAAACAGTGGCATGGACCACACCCAGCGGAA___GTATGTATTCTTTTTGGATCCATGCAACCTGGACTTGATAAACCGGAAGATTAAGTCTGTAGCACTGTGTGTAGCAGCGTGTCCAAGGC VGSRPPAVRGSRDRFTGESYTVLGQLSFYDANSKQLLYSFKTKFTQPVLPGFM|SSKREWKPLEDRSCTDIPW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7023 HNF1A::HORMAD2 ENSG00000135100.19::ENSG00000176635.18 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNF1A ENSG00000135100.19 protein_coding + + chr12:120978543-121002512:+ chr12:120989032:+ chr12:121416346-121440315:+ chr12:121426835:+ HORMAD2 ENSG00000176635.18 protein_coding + - chr22:30080464-30177075:+ chr22:30138425:- chr22:30476453-30573064:+ chr22:30534414:- chr12:120992538 chr22:30146173 NA NA chr12:121430341 chr22:30542162 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Hepatocyte_nuclear_factor_1_(HNF-1)__N_terminus(100%)| HNF-1_N(69%)| 0 2 1 18 6 ENST00000257555.11 unknown downstream downstream duplicates(1) CGAAGATGGTCAAGTCCTACCTGCAGCAGCACAACATCCCACAGCGGGAGGTGGTCGATACCACTGGCCTCAACCAGTCCCACCTGTCCCAACACCTCAAC...AAGCGGGCCGCCCTGTACACCTGGTACGTCCGCAAGCAGCGAGAGGTGGCGCAGC|GGGGCCAAGGTGAGAGGAATGCTTGACTCCAGGAGTTCGAGACCAGCCCAGGAAACATGGCGAGACCCCATCTCCACAAAAATATTTTAAAAATTACCCAGGCATGGCGGTGCACACCTATGGTCCCA...TCTCTGTgGCCaAGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAA-TGGGCAAAAGATCCGAATATACATGTCTCCAAGGAATATATATAAATGGAT...CTTACTTTGCACCCACTAGGATGGCTAGAATCAAAAAGTGAGACAATACCAAGTGCTGGTAAGGATGTGGAGAAATTGGAACCCTCATACACTGATGTTGG KRAALYTWYVRKQREVAQ|rgqgerna* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE HNF1 homeobox A 1 Yes hepatic adenoma, hepatocellular hepatic adenoma, hepatocellular carcinoma familial hepatic adenoma epithelial TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 7024 CHRNA5::SEMA6D ENSG00000169684.13::ENSG00000137872.17 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHRNA5 ENSG00000169684.13 protein_coding + + chr15:78565520-78595269:+ chr15:78565825:+ chr15:78857862-78887611:+ chr15:78858167:+ SEMA6D ENSG00000137872.17 protein_coding + - chr15:47184101-47774228:+ chr15:47521215:- chr15:47476298-48066425:+ chr15:47813412:- chr15:78578534 chr15:47572773 NA NA chr15:78870876 chr15:47864970 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 2 0 1 47 29 ENST00000299565.9 unknown downstream downstream none CGGGGGTCAGGGCCCCGCGCGCTCCGCCTGCTGCTCTTGGTCCAGCTGGTCGCGGGGCGCTGCGGTCTAGCGGGCGCGGCGGGCGGCGCGCAGAGAG|GTGCCATCAGAGAGCACTGCAACCTGTGTTCAGCCAGGTCATGTGAATGAATGCATAACTGAATGAGTCCATGTTGAC...GGGCACAACTGCCATCTTGTCAGCAAGGCCCTCCAAGCCAACACCTATGAGAGGAGGCAGTTCTACTTTGGTTCCAACAACACAAAAAAGGCAACTTTCTA RGSGPRALRLLLLVQLVAGRCGLAGAAGGAQR|gairehcnlcsarsce* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7026 HTR7::HSPA12A ENSG00000148680.16::ENSG00000165868.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HTR7 ENSG00000148680.16 protein_coding - - chr10:90740823-90858039:- chr10:90857133:- chr10:92500580-92617796:- chr10:92616890:- HSPA12A ENSG00000165868.16 protein_coding - - chr10:116671192-116850251:- chr10:116727380:- chr10:118430703-118609762:- chr10:118486891:- chr10:90794247,chr10:90794250 chr10:116777764,chr10:116777764 NA NA chr10:92554004,chr10:92554007 chr10:118537275,chr10:118537275 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none 7_transmembrane_receptor_(rhodopsin_family)(28%)| 7TM_GPCR_Srsx(0%),7tm_1(0%)| 0 1 1 0 23 ENST00000336152.8 ENST00000674197.1 upstream downstream none ACCTGATCGTGTCCCTGGCGCTGGCCGACCTCTCGGTGGCTGTGGCGGTCATGCCCTTCGTCAGCGTCACCGACCTCATCGGGGGCAAGTGGATCTTTGGA...GCCATGGACGTCATGTGCTGCACGGCCTCGATCATGACCCTGTGCGTGATCAGCATTGACAG|GAAGTCCAGGTCGTCCTGCTGGAGAGGCCACCTAGAGGG...AGCCTTGAGATGACTTTAGCTGcATGAGTTGACCCCAG___AAACGGCTCCCACATCTGCATATTCATCTCCAGCCCGGAGTCTTGGGGACACAGGAATAACGC AMDVMCCTASIMTLCVISIDr|ksrsscwrghle NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7027 SMARCA4::LDLR ENSG00000127616.22::ENSG00000130164.15 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 691 FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10961174:+ chr19:11071608-11190102:+ chr19:11071850:+ LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11111514:+ chr19:11200094-11244496:+ chr19:11222190:+ chr19:10976217,chr19:10976208,chr19:10976209 chr19:11110890,chr19:11110878,chr19:11110881 NA NA chr19:11086893,chr19:11086884,chr19:11086885 chr19:11221566,chr19:11221554,chr19:11221557 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Calcium-binding_EGF_domain(99%),Coagulation_Factor_Xa_inhibitory_site(55%),Low-density_lipoprotein_receptor_repeat_class_B(100%) |EGF_CA(2%),FXa_inhibition(36%),Ldl_recept_b(100%),cEGF(1%),hEGF(100%) 4 14 12 699 1053 ENST00000644737.1 ENST00000559340.2 downstream upstream duplicates(3),low_entropy(1),mismatches(13) GGCGGGCGCGCGCGCGAGGCTTCCCCTCGTTTGGCGGCGGCGGCGGCTTCTTTGTTTCGTGAAGAGAAGCGAGACGCCCATTCTGCCCCCGGCCCCGCGCGGAGGGGCGGGGGAGGCGCCGGGAAGTCGACGGCGCCGGCGGCTCCTG|ATATCGATGAGTGTCAGGATCCCGACACCTGCAGCCAGCTCTGCGTGAACCTGGAGGGTGGCTACAAGTGCCAGTGTGAGGAAGGCTTCCAGCTGGACCCCCACACGAAGGCCTGCAAGGCTGTGG___GCTCCATCGCCTACCTCTTCTTCACCAACCGGCACGAGGTCAGGAAGATGACGCTGGACCGGAGCGAGTACACCAGCCTCATCCCCAACCTGAGGAACGTGGTCGCTCTGGACACGGAGGTGGCCAGCAATAGAATCTACTGGTCTGACCTGTCCCAGAGAATGATCTGCAG___CACCCAGCTTGACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 7029 ACAP2::XXYLT1 ENSG00000114331.16::ENSG00000173950.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 692 TRUE 1225 TRUE 473 ACAP2 ENSG00000114331.16 protein_coding - - chr3:195274745-195443044:- chr3:195442795:- chr3:194995474-195163773:- chr3:195163524:- XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195070111:- chr3:194789013-194991888:- chr3:194790840:- chr3:195415196,chr3:195415202 chr3:195100677,chr3:195100680 NA NA chr3:195135925,chr3:195135931 chr3:194821406,chr3:194821409 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none BAR_domain_of_APPL_family(5%)|Glycosyl_transferase_family_8(59%) BAR_3(0%)|Glyco_transf_8(0%) 1 6 5 82 339 ENST00000326793.11 ENST00000310380.11 upstream downstream duplicates(2),mismatches(3) GGCGCCCTTCGCAGCTCCGCGCAACGCTAGTCGCGGCCGTGCGCCCGCCGTAGCCGTCTGCGTCCCAGCGCGGCCGCTCCCGCGGCCCCCTCGGCTTTGCCAGCGCCGCCTGCGAGGCGGAGGCAGGATGAAGATGACTGTGGATTTCGAGGAGTGTCTGAAGGACTCGCCCCGCTTCAG|GCACACATTCTGGCAGTTCCGCCATGAGAACCCCCAGACCCGGGTTGGGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGACAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAGCTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCATGGCTACAGTGACGTCTTCGAGGCCTATTTCAGGTGTGAGGGCCACGTCAAG MKMTVDFEECLKDSPRFr|HTFWQFRHENPQTRVGGPPPEGLPGFNSGVMLLNLEAMRQSPLYSRLLEPAQVQQLADKYHFRGHLGDQDFFTMIGMEHPKLFHVLDCTWNRQLCTWWRDHGYSDVFEAYFRCEGHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Breast,Lung,Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7030 ACAP2::XXYLT1 ENSG00000114331.16::ENSG00000173950.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1225 TRUE 473 ACAP2 ENSG00000114331.16 protein_coding - - chr3:195274745-195443044:- chr3:195442150:- chr3:194995474-195163773:- chr3:195162879:- XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195070111:- chr3:194789013-194991888:- chr3:194790840:- chr3:195415196,chr3:195415202 chr3:195100677,chr3:195100680 NA NA chr3:195135925,chr3:195135931 chr3:194821406,chr3:194821409 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none BAR_domain_of_APPL_family(5%)|Glycosyl_transferase_family_8(59%) BAR_3(0%)|Glyco_transf_8(0%) 1 0 5 2 339 ENST00000481463.5 ENST00000310380.11 upstream downstream duplicates(1),mismatches(3) GGAGGAGAGAGTAGGGGGCGAACTGGGACGCCGACTTCTGCTTCGCGGTGCCCCCGGCCAGAGCGACTCTCCGGAGGGCGCCCGCGGTGGATGCGTGCGGGAATCGCGGGGGGAAGCGCTGTGATCAACCGCATTCCGTGGACCCTAGTTG|GCACACATTCTGGCAGTTCCGCCATGAGAcCCCCCgGACCgGGGTTGcGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGACAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAGCTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGTGCACCTGGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Breast,Lung,Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7037 PFKP::DIP2C ENSG00000067057.19::ENSG00000151240.18 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1226 TRUE 474 PFKP ENSG00000067057.19 protein_coding + + chr10:3066333-3137718:+ chr10:3109480:+ chr10:3108525-3179910:+ chr10:3151672:+ DIP2C ENSG00000151240.18 protein_coding - - chr10:274201-689668:- chr10:486530:- chr10:320141-735608:- chr10:532470:- chr10:3110676,chr10:3110677 chr10:549643,chr10:549642 NA NA chr10:3152868,chr10:3152869 chr10:595583,chr10:595582 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Phosphofructokinase(51%)|AMP-binding_enzyme(100%),DMAP1-binding_Domain(87%) PFK(73%)|AMP-binding(100%),DMAP_binding(18%) 2 0 1 1921 39 ENST00000699222.1 ENST00000280886.12 downstream downstream none GTTCCTTCCAGAATCTCCACCAGAGGAAGGCTGGGAGGAGCAGATGTGTGTCAAACTCTCGGAG___AACCGTGCCCGGAAAAAAAGGCTGAATATTATTATTGTGGCTGA...GCAGTCATCGCCTTGCTAGAGGCCACCCCGGACACCCCAGCTTGCGTCGTGTCACTGAACGGGAACCACGCCGTGCGCCTGCCGCTGATGGAGTGCGTGCAGATG|GTGACATCACACAAAAAGGATATGAAAAGAAG AVIALLEATPDTPACVVSLNGNHAVRLPLMECVQM|vtshkkdmkr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7038 PFKP::DIP2C ENSG00000067057.19::ENSG00000151240.18 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1226 TRUE 474 PFKP ENSG00000067057.19 protein_coding + + chr10:3066333-3137718:+ chr10:3109480:+ chr10:3108525-3179910:+ chr10:3151672:+ DIP2C ENSG00000151240.18 protein_coding - - chr10:274201-689668:- chr10:520355:- chr10:320141-735608:- chr10:566295:- chr10:3110676,chr10:3110677 chr10:549643,chr10:549642 NA NA chr10:3152868,chr10:3152869 chr10:595583,chr10:595582 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none Phosphofructokinase(51%)|AMP-binding_enzyme(100%),DMAP1-binding_Domain(87%) PFK(73%)|AMP-binding(100%),DMAP_binding(31%) 1 1 1 1921 1 ENST00000699222.1 ENST00000280886.12 downstream downstream none GCAATTGATACCCAAAATAAACCCATCACCTCTGAGAAAATCAAAGAG___CTTGTCGTCACGCAGCTGGGCTATGACACACGTGTGACCATCCTCGGGCACGT...GCAGTCATCGCCTTGCTAGAGGCCACCCCGGACACCCCAGCTTGCGTCGTGTCACTGAACGGGAACCACGCCGTGCGCCTGCCGCTGATGGAGTGCGTGCAGATG|GTAACGCACACGTCTTCGGAAAGTGCTGTATTTCAGTTGCTaTCGGCTCTGA...GAGCGtTGCTTGTTGAAGGCCCGTGTGGAAACTTTGCCT___GTGACATCACACAAAAAGGATATGAAAAGAAGAGGTCAAAGTTAATTGGAGCCTACCTTCCG AVIALLEATPDTPACVVSLNGNHAVRLPLMECVQM|vthtssesavfqllsal NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7040 ZNF620::ADAMTS9 ENSG00000177842.12::ENSG00000163638.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF620 ENSG00000177842.12 protein_coding + + chr3:40477131-40518736:+ chr3:40477942:+ chr3:40518622-40560227:+ chr3:40519433:+ ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64658510:- chr3:64501330-64673676:- chr3:64644186:- chr3:40485216,chr3:40485212 chr3:64669447,chr3:64669451 NA NA chr3:40526707,chr3:40526703 chr3:64655123,chr3:64655127 NA NA sense sense unknown intron CDS inversion low none |ADAM-TS_Spacer_1(100%),ADAMTS_cysteine-rich_domain_2(100%),GON_domain(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(86%),Thrombospondin_type_1_domain(100%) |ADAM_CR_2(100%),ADAM_CR_3(100%),ADAM_spacer1(100%),GON(100%),Reprolysin(99%),Reprolysin_2(99%),Reprolysin_3(99%),Reprolysin_5(98%),TSP1_ADAMTS(100%),TSP_1(100%) 0 0 4 25 2 ENST00000649142.1 ENST00000498707.5 downstream downstream none GGCCCAGTCCCCAGTCTTCAGAGACGCCCTCGACCTTCCTGCTCCGAGGAGCTGGCCTGATGTCCTCGGGTCGCG___CTCCGCAGGTTCTTACTTTTcCAAA...|...ATGTCAATT___GTAGCCTCTATCTATAAAGACCCAAGTATTGGAAATTTAATTAATATTGTTATTGTGAACTTAATTGTGATTCATAATGAACAG___GATGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7044 LLGL2::TSEN54 ENSG00000073350.14::ENSG00000182173.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LLGL2 ENSG00000073350.14 protein_coding + + chr17:75525080-75575209:+ chr17:75558627:+ chr17:73521161-73571290:+ chr17:73554708:+ TSEN54 ENSG00000182173.14 protein_coding + + chr17:75515944-75524735:+ chr17:75521409:+ chr17:73512025-73520816:+ chr17:73517490:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 2 0 1 1275 674 ENST00000392550.8 ENST00000434205.8 downstream upstream none GCTTCCCGCACCAGCCCAGCGCCCTCGGCTACAGCCCGTCCCTGCaCATCCTGGCCATCGGCACCCGTTCTGGAGCCATCAAGCT___CTACGGAGCCCCAGGCGTGGAGTTCATGGGGCTGCACCAGGAGAACAACGCTGTGACGCAGATCCACCTCCTGC...GGAGCCTGAAGGTCAAGGGCGGGGCATCGGAGCTGCAGGAGGATGAGAGCTTCACACTGCGTGGACCCCCAGG|CTCTGTCCTGTCCCCGTATGAGAGGCAGCTTAACCTGGATGCCAGCGTGCAGCACTTGGAGGATGGAGATGGCAAGAGAAAGAatAGCAGCaCCAGCCCTCG___GTCCATTAATAAGAAGGCCAAGGaCCTGGACAACTCCCTGCAACCCAAGAGTCTGGC SLKVKGGASELQEDESFTLRGPPg|SVLSPYERQLNLDASVQHLEDGDGKRKnSStSPRSINKKAKdLDNSLQPKSL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7050 FAM149B1::ENSG00000227101 ENSG00000138286.15::ENSG00000227101.2 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73193593:+ chr10:74927877-75004262:+ chr10:74953351:+ ENSG00000227101 ENSG00000227101.2 lncRNA + + chr10:4024903-4053018:+ chr10:4047081:+ chr10:4067095-4095210:+ chr10:4089273:+ chr10:73201954 chr10:4042930 NA NA chr10:74961712 chr10:4085122 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Protein_of_unknown_function_(DUF3719)(100%)| DUF3719(100%)| 1 0 0 79 0 ENST00000242505.11 ENST00000656775.1 downstream upstream duplicates(1) CAAGAGTCTACAAGAAGAGTGCCAACAGTGGACAGCTAGCTTTCCTCACCTCAG___GATTCTAGGTAGGCAGATAATCACTCCAAGTGAAGGTTATAGATTGT...ACCTTGTCTCAAGAAAGAGAgTCTACTAT|GCCTTCAGACAACACTCCCGCACTGGGTTTATGAGAGTAACCCCCACCTTCCCAGGAAGTTGGAAGCATTGC TLSQEReSTm|psdntpalgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7051 MFSD11::IFT172 ENSG00000092931.12::ENSG00000138002.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MFSD11 ENSG00000092931.12 protein_coding + + chr17:76735865-76781449:+ chr17:76754087:+ chr17:74731947-74777531:+ chr17:74750169:+ IFT172 ENSG00000138002.16 protein_coding - - chr2:27444377-27489805:- chr2:27485503:- chr2:27667244-27712672:- chr2:27708370:- chr17:76763771 chr2:27487336 NA NA chr17:74759853 chr2:27710203 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Ion_channel_regulatory_protein_UNC-93(100%)|WD_domain__G-beta_repeat(100%) RRM_1(100%),RRM_5(100%),UNC-93(100%)|NSF(100%),WD40(100%) 1 0 0 128 80 ENST00000586622.5 ENST00000675690.1 downstream downstream none ATCTATGGAGTGTTCTCTGCTTCAAATTTGATTACACCGTCAGTGGTTGCCATTGTAGGACCTCAACTCTCTATGTTTGCCAGTGGTTTATTTTACAG___CAT...AGTCTTCTGATGACCAGGACATGGAAGTCAACGA___GTCTGCCCAGAACAATCTGACAAAGGCAGTAGATGCTTTTA|GATGGAGCTGCAAAGGTGACCTGCAT SSDDQDMEVNESAQNNLTKAVDAF|rwsckgdl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7056 CAPZA2::COMETT ENSG00000198898.16::ENSG00000231210.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 693 TRUE 1228 TRUE 475 CAPZA2 ENSG00000198898.16 protein_coding + + chr7:116811070-116922049:+ chr7:116862650:+ chr7:116451124-116562103:+ chr7:116502704:+ COMETT ENSG00000231210.3 lncRNA - - chr7:116563594-116663829:- chr7:116573744:- chr7:116203648-116303883:- chr7:116213798:- chr7:116864503,chr7:116864513,chr7:116864497,chr7:116864522,chr7:116864529,chr7:116864532,chr7:116864550 chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217 NA NA chr7:116504557,chr7:116504567,chr7:116504551,chr7:116504576,chr7:116504583,chr7:116504586,chr7:116504604 chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none none none 98 303 174 16903 1744 ENST00000414148.6 ENST00000650435.1 downstream downstream duplicates(198),low_entropy(3),mismatches(12) CACGGAAACGGGGAAGTCAGGTGGCCGCTGCCGCCGCCGCCGCCGCGGTTTGTCGCCAGAAGGAAGATGGCGGATCTGGAGGAGCAGTTGTCTGATGAAGAGAAG|CCCCTTGACTGGGCAAACTTCAAACAAGTGACTGAGCTCCCTTAGCTGCCACTGATTGGACCAGGATGGACAACAAATGTAGGAGGAGTTCATCTGGATCTAGCCTGAGCCAGTCAGATATCCCCTTTGAATCCATGCCTATAGAAATACAAAAAAATGGAAGCCAGAGGATGATGGATCCTTGAAGTAATAAGTCAG___...TCAATCCATATTGATGAACACAAGAATAATTCTGGTCTACAAAGAGAGGCAAG...___CTCTGTGGAAGTTTGAGTGACTCATTGCAGAGAGGAATTGATGAAGTCAACAGCTGCTGGAAAAACTTCTTTTTCCTTAATAGCTGTATCAACATGTGGTTGCTATTATTCAAGTAAGAAAAATATGTATATCAAACATCCATGGTAGTCCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7057 CAPZA2::COMETT ENSG00000198898.16::ENSG00000231210.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1228 TRUE 475 CAPZA2 ENSG00000198898.16 protein_coding + + chr7:116811070-116922049:+ chr7:116862650:+ chr7:116451124-116562103:+ chr7:116502704:+ COMETT ENSG00000231210.3 lncRNA - - chr7:116563594-116663829:- chr7:116571230:- chr7:116203648-116303883:- chr7:116211284:- chr7:116864503,chr7:116864513,chr7:116864497,chr7:116864522,chr7:116864529,chr7:116864532,chr7:116864550 chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217 NA NA chr7:116504557,chr7:116504567,chr7:116504551,chr7:116504576,chr7:116504583,chr7:116504586,chr7:116504604 chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion medium none none none 11 80 36 16903 1695 ENST00000414148.6 ENST00000650435.1 downstream downstream duplicates(31),low_entropy(1),mismatches(4) ACGGAAACGGGGAAGTCAGGTGGCCGCTGCCGCCGCCGCCGCCGCGGTTTGTCGCCAGAAGGAAGATGGCGGATCTGGAGGAGCAGTTGTCTGATGAAGAGAAG|CTCTGTGGAAGTTTGAGTGACTCATTGCAGAGAGGAATTGATGAAGTCAACAGCTGCTGGAAAAACTTCTTTTTCCTTAATAGCTGTATCAACATGTGGTTGCTATTATTCAAGTAAGAAAAATATGTATATCAAAC...TCCATGGTAGTCCTTGCTAAAATTTTCATTAGAG...___AGTGGATGAAATAATTCTGCAAGCCAGTGGGAACAGGAAGCTTCATGAAGAGGAGAAAGGCTTAGGGCTCAGAAACCGCACAGAGCAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7059 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 694 TRUE 1229 TRUE 476 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72524447,chr17:72524467,chr17:72524449 chr17:72684492,chr17:72684494,chr17:72684491 NA NA chr17:70520587,chr17:70520607,chr17:70520589 chr17:70680631,chr17:70680633,chr17:70680630 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(34%) |Zip(0%) 37 65 74 491 249 ENST00000648631.1 ENST00000255559.8 upstream downstream duplicates(38),mismatches(7) CTGAGGACCCCCGCCCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCCCTACGCTCTGGCCTTTGCTGCCGGTGCCATGGTCTACGTGGTCATGGACGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7061 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1229 TRUE 476 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72583044:- chr17:70286232-70636611:- chr17:70579183:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72524447,chr17:72524467,chr17:72524449 chr17:72684492,chr17:72684494,chr17:72684491 NA NA chr17:70520587,chr17:70520607,chr17:70520589 chr17:70680631,chr17:70680633,chr17:70680630 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |ZIP_Zinc_transporter(34%) |Zip(0%) 1 1 75 29 249 ENST00000648054.1 ENST00000255559.8 upstream downstream duplicates(17),mismatches(7) TTCAGAGTGGAAATGGTGGCCAATCCAGACCCTGCACTGCCACTGACTCTCCGGGAATGTCAGCGCCAG___ACCAGACTTCTTTAGGGGATCCAGGACTAAGC...GGAAGGTGTTTCTGAACCTCAGGGAATCTGTGGCCACTGGCAAGCCAGCGGAAAATTCAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7062 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1229 TRUE 476 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72586654:- chr17:70286232-70636611:- chr17:70582793:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72524447,chr17:72524467,chr17:72524449 chr17:72684492,chr17:72684494,chr17:72684491 NA NA chr17:70520587,chr17:70520607,chr17:70520589 chr17:70680631,chr17:70680633,chr17:70680630 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |ZIP_Zinc_transporter(34%) |Zip(0%) 2 0 74 21 249 ENST00000648520.1 ENST00000255559.8 upstream downstream duplicates(17),mismatches(7) TCGGCGCCCATCGGAAGCTGATTTGAAGATTTAGCAGCCTGTGTGGAAGCGGGGGTTCTGTTGCGCTTTACAAAGTGAAAGGAAGGTGTCTGAGGTGCTGGCCTTTGGGGACAATTTCACTAT|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7063 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1229 TRUE 476 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72618316:- chr17:70286232-70636611:- chr17:70614455:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72524447,chr17:72524467,chr17:72524449 chr17:72684492,chr17:72684494,chr17:72684491 NA NA chr17:70520587,chr17:70520607,chr17:70520589 chr17:70680631,chr17:70680633,chr17:70680630 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |ZIP_Zinc_transporter(34%) |Zip(0%) 1 1 0 336 249 ENST00000701652.1 ENST00000255559.8 upstream downstream none GAGAGGCCTCGTGGAGGAGGAAGAGTTTCGCTCAGCTGCTTGGGTGTGGGACTGAATGTGGTTCCAGAACTGGTCGCTGCCTTCACCCGCTGACTCTGGTCTCGGCGATGACA|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7064 GPBP1L1::IPP ENSG00000159592.11::ENSG00000197429.11 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 696 FALSE NA FALSE NA GPBP1L1 ENSG00000159592.11 protein_coding - - chr1:45627304-45688113:- chr1:45659028:- chr1:46092976-46153785:- chr1:46124700:- IPP ENSG00000197429.11 protein_coding - - chr1:45694324-45750653:- chr1:45727798:- chr1:46159996-46216325:- chr1:46193470:- chr1:45658259,chr1:45658265 chr1:45729693,chr1:45729696 NA NA chr1:46123931,chr1:46123937 chr1:46195365,chr1:46195368 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Kelch_motif(98%) |Kelch_1(97%),Kelch_2(100%),Kelch_4(100%),Kelch_6(100%) 39 27 94 721 229 ENST00000290795.7 ENST00000359942.8 upstream downstream duplicates(31),mismatches(8) CCTGGCTTCTTCGTGCTTCATCATAAGTCGTGCTGCCGGCCAGGTTACTTAAGCACCCTTTTAACAAGGAAACCTTGTGGGAGATCCAGCTGGCCGACTCGAGTTCAGAAACAGGACCACAGAGGTTACACTCTGGG___ATCCTGGCCATGAGGTTGGATGCCTCACCTTACTGAAAGGAGACACTGGACCTAAATGGCGCAGCATGATTTTGTTCCTGCTTGGCTAAATTTCTCAACACCACAGTCAGCTAAG|GTGGATATACTCGGTTGCAGGGGGGTCGCTGGAGTGATAGCAGAGCCCTCAGCTGTGTAGAACGTTTTGACACCTTTAGCCAGTACTGGACCACTGTGTCTTCACTTCATCAGGCTCGAAGTGGGCTGGGAGTAACAGTTCTGGGAGGGATGGTCTACGCTATTGGAG___GTGAAAAGGATTCAATGATTTTTGATTGTACTGAATGCTATGATCCAGT MAQHDFVPAWLNFSTPQSAK|vdilgcrgvagviaepsav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7065 CBL::FOXR1 ENSG00000110395.8::ENSG00000176302.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1230 TRUE 477 CBL ENSG00000110395.8 protein_coding + + chr11:119206298-119313926:+ chr11:119206613:+ chr11:119077008-119184636:+ chr11:119077323:+ FOXR1 ENSG00000176302.13 protein_coding + + chr11:118971712-118981287:+ chr11:118971915:+ chr11:118842422-118851997:+ chr11:118842625:+ chr11:119211528 chr11:118971912 chr11:119211529 chr11:118971916 chr11:119082238 chr11:118842622 chr11:119082239 chr11:118842626 sense sense in-frame intron 5'UTR duplication high none CBL_proto-oncogene_N-terminal_domain_1(12%)|Forkhead_domain(100%) Cbl_N(0%)|Forkhead(100%) 32 51 63 294 300 ENST00000634586.1 ENST00000531539.5 downstream upstream duplicates(17),mismatches(8) CCTCCTTCACGCCCTGCTTCTCTCCCTCGCTCGCAGTCGAGCCGAGCCGGCGGACCCGCCTGGGCTCCGACCCTGCCCAGGCCATGGCCGGCAACGTGAAGAAGAGCTCTGGGGCCGGGGGCGGCAGCGGCTCCGGGGGCTCGGGTTCGGGTGGCCTGATTGGGCTCATGAAGGACGCCTTCCAGCCGCACCACCACCACCACCACCACCTCAGCCCCCACCCGCCGGGGACGGTGGACAAGAAGATGGTGGAGAAGTGCTGGAAGCTCATGGACAAGG|GACTGCTGGACTGGGACATGGGGAACGAGtTCTTTCTGGCCTTCACCACATCTCACCTCCCCTTAGCGGAGCAGAAAC___TTGCCAGGTATAAACTCCGAATTGTTAAGCCACCAAAATTACCCCTAGAGAAAAAACCCAACCCTGATAAGGATG___GTCCAGATTATGAGCCCAACCTCTGGATGTGGGTAAATCCCAACATTGTGTATCCCCCTGGAAAGCTGG MAGNVKKSSGAGGGSGSGGSGSGGLIGLMKDAFQPHHHHHHHLSPHPPGTVDKKMVEKCWKLMDK|glldwdMGNEfFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Cas-Br-M (murine) ecotropic retroviral transforming 1 Yes AML, JMML, MDS leukaemia_lymphoma oncogene, TSG, fusion translocation, missense, splice_site, other TRUE forkhead box R1 2 neuroblastoma other oncogene, fusion translocation 7066 CBL::FOXR1 ENSG00000110395.8::ENSG00000176302.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1230 TRUE 477 CBL ENSG00000110395.8 protein_coding + + chr11:119206298-119313926:+ chr11:119206612:+ chr11:119077008-119184636:+ chr11:119077322:+ FOXR1 ENSG00000176302.13 protein_coding + + chr11:118971712-118981287:+ chr11:118978782:+ chr11:118842422-118851997:+ chr11:118849492:+ chr11:119211529,chr11:119211528 chr11:118971916,chr11:118971912 NA NA chr11:119082239,chr11:119082238 chr11:118842626,chr11:118842622 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none CBL_proto-oncogene_N-terminal_domain_1(12%)|Forkhead_domain(100%) Cbl_N(0%)|Forkhead(100%) 7 4 23 294 336 ENST00000634586.1 ENST00000531539.5 downstream upstream duplicates(5),mismatches(5) CTCCTTCACGCCCTGCTTCTCTCCCTCGCTCGCAGTCGAGCCGAGCCGGCGGACCCGCCTGGGCTCCGACCCTGCCCAGGCCATGGCCGGCAACGTGAAGAAGAGCTCTGGGGCCGGGGGCGGCAGCGGCTCCGGGGGCTCGGGTTCGGGTGGCCTGATTGGGCTCATGAAGGACGCCTTCCAGCCGCACCACCACCACCACCACCACCTCAGCCCCCACCCGCCGGGGACGGTGGACAAGAAGATGGTGGAGAAGTGCTGGAAGCTCATGGACAAG|TTGCCAGGTATAAACTCCGAATTGTTAAGCCACCAAAATTACCCCTAGAGAAAAAACCCAACCCTGATAAGGATG___GTCCAGATTATGAGCCCAACCTCTGGATGTGGGTAAATCCCAACATTGTGTATCCCCCTGGAAAGCTGGAGGTCTCAGGACGTAGGAAGAGGGAGGACCTGACAAGCACACTC MAGNVKKSSGAGGGSGSGGSGSGGLIGLMKDAFQPHHHHHHHLSPHPPGTVDKKMVEKCWKLMDK|lpginsellshqnyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Cas-Br-M (murine) ecotropic retroviral transforming 1 Yes AML, JMML, MDS leukaemia_lymphoma oncogene, TSG, fusion translocation, missense, splice_site, other TRUE forkhead box R1 2 neuroblastoma other oncogene, fusion translocation 7067 VAV2::DEUP1 ENSG00000160293.17::ENSG00000165325.15 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 697 FALSE NA FALSE NA VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133861374:- chr9:136627016-136857726:- chr9:136726496:- DEUP1 ENSG00000165325.15 protein_coding + + chr11:93329971-93438487:+ chr11:93355371:+ chr11:93063137-93171653:+ chr11:93088537:+ chr9:133844791,chr9:133844922,chr9:133844793 chr11:93353866,chr11:93353898,chr11:93353864 NA NA chr9:136709913,chr9:136710044,chr9:136709915 chr11:93087032,chr11:93087064,chr11:93087030 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none CAMSAP_CH_domain(100%)|Centrosomal_protein_of_63_kDa__(100%) CAMSAP_CH(100%),CH(100%)|CEP63(100%) 44 52 49 271 161 ENST00000371851.1 ENST00000531448.5 upstream upstream duplicates(33),mismatches(9),multimappers(1) CTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG___TTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAG___GTCATCTCCGCGGTGTCGAGGCTCTCCCTGCACAGCATCGCGCAGAACAAAGGGATCAG|AACTTCTCCTTGTGAGGCTGAGCTTCAGGAATTAATGGAACAAATTGACATCATGGTAAGCAACAAGAAAATGGATTGGGAAAGAAAGATGCGGGCTTTGGAGACACGATTAGATCTTCGGGATCAAGAATTGGCAAATGCACAAACTTGTTTGGATCAGAAAGGTCAAGAG___GTAGGGTTACTTCGACAGAAATTGGACAGTCTGGAAAAATGTAATTTAGCAATGACTCAGAA SPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGKVISAVSRLSLHSIAQNKGIr|TSPCEAELQELMEQIDIMVSNKKMDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7072 NTPCR::ASXL3 ENSG00000135778.12::ENSG00000141431.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NTPCR ENSG00000135778.12 protein_coding + + chr1:232950605-232983882:+ chr1:232956443:+ chr1:233086351-233119628:+ chr1:233092189:+ ASXL3 ENSG00000141431.14 protein_coding + - chr18:33578219-33751195:+ chr18:33688351:- chr18:31158183-31331159:+ chr18:31268315:- chr1:232959860,chr1:232959602 chr18:33689116,chr18:33689116 NA NA chr1:233095606,chr1:233095348 chr18:31269080,chr18:31269080 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none NTPase(45%)| NTPase_1(20%)| 29 51 53 92 130 ENST00000366628.10 unknown downstream downstream duplicates(34),mismatches(5),multimappers(1) AGTCAGACAGGGAGGGAGAAGAATAGGATTCGATGTCGTCACGTTGTCCGGCACCCGGGGGCCTTTATCGAGAGTTGG___GTTAGAGCCTCCACCTGGAAAACGTGAATGCCGAGTTGGGCAGTATGTGGTCGACCTGACTTCTTTTGAGCAGTTGGCACTACCCGTCTTGAGGAAT|GCGCTGTTAATTGCCTACGAAGCATCTACTCCAACCTGTGTATCCCCTGATAAAACTTCTAAAAAACAGATTTTTACAGTATCTCTGACCTCTACCACAAGTGCACCATTTTACTTCAGGAGATGATGAACACACTCTCTGAGCTCCAAGGACAGGCGTACTGGGTTTAGGCCAATTTGTATATTCCATTCCCTTGGCTACAGTCATTGTTTAAGAAATGCTCATGTGATCTAAACGGTACTATTAGTGTGAATCTTAGG VRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRN|alliayeastptcvspdktskkqiftvsltsttsapfyfrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7073 ARID1A::RPS6KA1 ENSG00000117713.21::ENSG00000117676.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 700 FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26732792:+ chr1:27019727-27108595:+ chr1:27059283:+ RPS6KA1 ENSG00000117676.14 protein_coding + + chr1:26529761-26575030:+ chr1:26571449:+ chr1:26856252-26901521:+ chr1:26897940:+ chr1:26745868,chr1:26746055 chr1:26564116,chr1:26564146 NA NA chr1:27072359,chr1:27072546 chr1:26890607,chr1:26890637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Protein_kinase_domain(28%) |Kdo(0%),PK_Tyr_Ser-Thr(6%),Pkinase(6%) 31 20 64 238 200 ENST00000430799.7 ENST00000374168.7 downstream upstream duplicates(29),mismatches(15) CCCAGAGCCAGCCCCCCTACTCACAGCCACAGGCTCAGTCTCCTTACCAGCAGCAGCAACCTCAGCAGCCAGCACCCTCGACGCTCTCCCAGCAGGCTGCGTATCCTCAGCCCCAGTCTCAGCAGTCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCGCAG___GAGCTATCTCAAGATTCATTTGGGTCTCAGGCATCCTCAGCCCCCTCAATGACCTCCAGTAAGGGAGGGCAAGAAGATATGAACCTGAGCCTTCAGTCAAGACCCTCCAGCTTGCCT|GTTGTGCACAGGGACCTGAAGCCCAGCAACATCCTGTATGTGGACGAGTCCGGGAATCCCGAGTGCCTGCGCATCTGTGACTTTGGTTTTGCCAAACAGCTGCGGGCTGAGAATGGGCTCCTCATGACACCTTGCTACACAGCCAACTTTGTGGCGCCTGAG___GTGCTGAAGCGCCAGGGCTACGATGAAGGCTGCGACATCTGGAGCCTGGGCATTCTGCTGTACACCATGCTGGCAGG QSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLP|VVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Ribosomal protein S6 kinase alpha-1 AGC RSK RSKp90 Q15418 TRUE Stomach exact TRUE Stomach adenocarcinoma STOMACH exact 27102198 FALSE 26897940 TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 7074 MAML2::BBOX1-AS1 ENSG00000184384.15::ENSG00000254560.6 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96341383:- chr11:95709762-96076359:- chr11:96074547:- BBOX1-AS1 ENSG00000254560.6 lncRNA - + chr11:27047186-27220113:- chr11:27185060:+ chr11:27068733-27241660:- chr11:27206607:+ chr11:96209722,chr11:96209724 chr11:27166416,chr11:27166414 NA NA chr11:95942886,chr11:95942888 chr11:27187963,chr11:27187961 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none MamL-1_domain(100%)| MamL-1(100%)| 19 51 26 103 151 ENST00000524717.6 unknown upstream upstream duplicates(16),mismatches(7) TGCCACCACTACAGCCCCTCCACCGCCCCCTGCTGCCCCTCCTGCGGCCTCCCAAGCAGCAGCAACAGCAGCCCCACCGCCCCCACCAGACTATCACCATCACCACCAGCAGCACCTGCTGAACAGTAGCAATAATGGTGGCAGTGGTGGGATAAACGGAGAGCAGCAGCCGCCCGCTTCAACCCCAGGGGACCAGAGGAACTCAGCCCTGATTGCG|ATTGGGAAACTAAGGCCCAGAGAAGAAAAAGGAAGTGGTCAAGGTCATTCAGCTAAAGGACAAGAGGTGAATTTTCAAAGCATTGTAACCCTGAGGCTGCTCGGTTCAGGGTACAGGGTCAACAGACAAGGAACACTCCTGTGTTTCTGTTCTCAAAGCCACGGGTGATTCTCTCACCTCAGCTAAGTAGTCCTGACACATTTTGGACCAATTTGTTTCTCTTTCTACAAATATTTTG ATTTAPPPPPAAPPAASQAAATAAPPPPPDYHHHHQQHLLNSSNNGGSGGINGEQQPPASTPGDQRNSALIA|igklrpreekgsgqghsakgqevnfqsivtlrllgsgyrvnrqgtllcfcsqshg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7075 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22661205:+ chr12:22778009-22843599:+ chr12:22814139:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22601352:+ chr12:22562171-22771802:+ chr12:22754286:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Choline/ethanolamine_kinase(79%)| APH(58%),Choline_kinase(58%),EcKL(0%)| 13 30 50 625 117 ENST00000266517.9 ENST00000670175.1 downstream upstream duplicates(24),low_entropy(1),mismappers(4),mismatches(7),multimappers(3) CTGGATCCCCAAATCTAATCTTTGGCTAAAGATGGGAAAGTATTTCTCTCTCATTCCCACAGGATTTGCAGATGAAGACATTAATAAAAG___GTTCCTAAGTGATATCCCAAGCTCTCAGATTCTCCAGGAgGAGATGACTTGGATGAAGGAGATTCTTTCCAACCTGGGCTCACCTGTTGTGCTTTGCCATAATGACCTATTGTGTAAGAATATAATCTACAATGAGAAACAAG|GAGACTTGCTCTGTTGCCCAGTCTGGAGTGCAGTGGCACAATCTCAGCACACTGCAACTTCCACCTCCTGTGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTATCTGGGATTACAG___GCCAACCCTGCTTATTCCTGTAAACCAACCAGTGATCTCTGGCTGCTGCTTAGAAGAAACAAGAGGGATGGCTAATTAAACAGGTTGAAGTAAAGGAGCCAGCCCAAACCCACCAAAACCAAAATGGTGACGAGAGTG WIPKSNLWLKMGKYFSLIPTGFADEDINKRFLSDIPSSQILQEEMTWMKEILSNLGSPVVLCHNDLLCKNIIYNEKQ|gdllccpvwsavaqsqhtatstscvqvillpqppeylglqanpaysckptsdlwlllrrnkrdg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 7076 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22661205:+ chr12:22778009-22843599:+ chr12:22814139:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22618485:+ chr12:22562171-22771802:+ chr12:22771419:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Choline/ethanolamine_kinase(79%)| APH(58%),Choline_kinase(58%),EcKL(0%)| 14 10 21 625 194 ENST00000266517.9 ENST00000661495.1 downstream upstream duplicates(6),mismatches(3),multimappers(3) CGTCAGCTTGCTAAAATCCATGCTATTCATGCACACAATGGCTGGATCCCCAAATCTAATCTTTGGCTAAAGATGGGAAAGTATTTCTCTCTCATTCCCACAGGATTTGCAGATGAAGACATTAATAAAAG___GTTCCTAAGTGATATCCCAAGCTCTCAGATTCTCCAGGAgGAGATGACTTGGATGAAGGAGATTCTTTCCAACCTGGGCTCACCTGTTGTGCTTTGCCATAATGACCTATTGTGTAAGAATATAATCTACAATGAGAAACAAG|GCCAACCCTGCTTATTCCTGTAAACCAACCAGTGATCTCTGGCTGCTGCTTAGAAGAAACAAGAGGGATGGCTAATTAAACAGGTTGAAGTAAAGGAGCCAGCCCAAACCCACCAAAACCAAAATGGTGACGAGAGTGACATCTGGTCGTCCTCACTGCTACACTCCCACCAGCACCACGACAGTTTACAAATTCTATGACAATGTCAGGAAGTTACCCTATGTGGTCTAAAAAGAGGAGGCATGAATAATCCACCCCTTGTTTAGCATATCATCAAG RQLAKIHAIHAHNGWIPKSNLWLKMGKYFSLIPTGFADEDINKRFLSDIPSSQILQEEMTWMKEILSNLGSPVVLCHNDLLCKNIIYNEKQ|gqpclfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 7077 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22625586:+ chr12:22778009-22843599:+ chr12:22778520:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22618485:+ chr12:22562171-22771802:+ chr12:22771419:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 1 0 594 194 ENST00000266517.9 ENST00000661495.1 downstream upstream duplicates(1) GCCGGGAGGGGGCCCTGAGCCTCCTGCAACACCTGCGGCCTCACTGGGACCCCCAGGAGGTGACCCTGCAG|GCCAACCCTGCTTATTCCTGTAAACCAACCAGTGATCTCTGGCTGCTGCTTAGAAGAAACAAGAGGGATGGCTAATTAAACAGGTTGAAGTAAAG REGALSLLQHLRPHWDPQEVTLQ|anpaysckptsdlwlllrrnkrdg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 7078 STK11::POLR2E ENSG00000118046.17::ENSG00000099817.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1226663:+ chr19:1177557-1228430:+ chr19:1226662:+ POLR2E ENSG00000099817.12 protein_coding - + chr19:1086574-1095380:- chr19:1094028:+ chr19:1086573-1095379:- chr19:1094027:+ chr19:1227321,chr19:1227356,chr19:1227330,chr19:1227328,chr19:1227317,chr19:1227344,chr19:1227346,chr19:1227349 chr19:1093671,chr19:1093671,chr19:1093675,chr19:1093671,chr19:1093671,chr19:1093671,chr19:1093671,chr19:1093671 NA NA chr19:1227320,chr19:1227355,chr19:1227329,chr19:1227327,chr19:1227316,chr19:1227343,chr19:1227345,chr19:1227348 chr19:1093670,chr19:1093670,chr19:1093674,chr19:1093670,chr19:1093670,chr19:1093670,chr19:1093670,chr19:1093670 NA NA sense antisense unknown 3'UTR/splice-site CDS duplication/5'-5' high none Protein_kinase_domain(100%)| Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 20 12 40 469 4134 ENST00000585748.3 unknown downstream upstream duplicates(17),low_entropy(2),mismatches(4) CGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCG___GACAGGTCCCAGAAGAGGAGGCCAGTCACAATGGACAGCGCCGGGGCCTCCCCAAGGCCGTGTGTATGAACGGCACAGAGGCGGCGCAGCTGAGCACCAAATCCAGGGCGGAGGGCCGGGCCCCCAACCCTGCCCGCAAGGCCTGCTCCGCCAGCAGCAAGATCCGCCGGCTGTCGGCCTGCAAGCAGCAGTGAGGCTGGCCGCCTGCAG|GGTCTGGTCAAGCTCGTCCTGGGTCACCAGATAGCCACGGTCGTGGCACAGCTGCAGAGAGAAAGAACCAGCTGACCCCAGGGCAGAGAGAGGAAGGCGGCCAAAGCTCGTGACCCGGAAGTCAGACCTGCGGCTGCTGCAGAGGACAGAGGTGAACAGCAAACGGGATGAACACTCACTGTGTGCTCCATGACAGCCACCCCGGCCCCCACAGCCTCACACCACAGGATGGGACCAGTATGATCCTGAGAGGCTCCCAGAGATGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 7079 POLR2E::STK11 ENSG00000099817.12::ENSG00000118046.17 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POLR2E ENSG00000099817.12 protein_coding - - chr19:1086574-1095380:- chr19:1093904:- chr19:1086573-1095379:- chr19:1093903:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1227593:+ chr19:1177557-1228430:+ chr19:1227592:+ chr19:1093671,chr19:1093675 chr19:1227303,chr19:1227300 NA NA chr19:1093670,chr19:1093674 chr19:1227302,chr19:1227299 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion medium none RNA_polymerase_Rpb5__N-terminal_domain(81%)| RNA_pol_Rpb5_N(40%)| 4 1 1 3313 418 ENST00000615234.5 ENST00000585748.3 upstream upstream duplicates(1) CGGCGGCGGCGGCGGAGGCTGCCATGGACGACGAGGAGGAGACGTACCGGCTCTGGAAAATCCGCAAGACCATCATGCAG___CTGTGCCACGACCGTGGCTATCTGGTGACCCAGGACGAGCTTGACCAGACCCTGGAGGAGTTCAAAGCCCAATtTGGGGACAAGCCGAGTGAGGGGCGGCCGCGGCGCACGGACCTCACCGTGCTGGTGGCCCACAACGATGACCCCACCGACCAGATGTTTGTGTTCTTTCCAG|CCCGTGTCCAGGAGCCCCGCCAGGTGCCCGCGCCAGGCCCTCAGTCTTCCTGCCGGTTCCGCCCGCCCTCCCGGAGAGGTGGCCGCCATGCTTCTGTGCCGACCACGCCCC MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQfGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP|arvqeprqvpapgpqsscrfrppsrrggrhasvpttp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 7082 RABGEF1::ENSG00000227681 ENSG00000154710.18::ENSG00000227681.5 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RABGEF1 ENSG00000154710.18 protein_coding + + chr7:66682164-66811464:+ chr7:66805396:+ chr7:66147151-66276451:+ chr7:66270383:+ ENSG00000227681 ENSG00000227681.5 lncRNA + - chr6:147660703-147953937:+ chr6:147944966:- chr6:147981839-148275073:+ chr6:148266102:- chr7:66807212,chr7:66807213 chr6:147946876,chr6:147946875 NA NA chr7:66272199,chr7:66272200 chr6:148268012,chr6:148268011 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none A20-like_zinc_finger(100%),Domain_of_unknown_function_(DUF5601)(100%),Vacuolar_sorting_protein_9_(VPS9)_domain(89%)| DUF5601(100%),VPS9(62%),zf-A20(100%)| 16 10 29 672 31 ENST00000284957.9 unknown downstream downstream duplicates(6),mismatches(4),multimappers(1) GGCGATCACAG___ATATCATTGAAATGGATTCCAAGCGTGTGCCTCGAGACAAGCTGGCCTGCATCACCAAGTGCAGCAAGCACATCTTCAATGCCATCAAGATCACCAAGAATGAGCCGGCGTCAGCGGATGACTTCCTCCCCACCCTCATCTACATTGTTTTGAAGGGCAACCCCCCACGCCTTCAGTCTAATATCCAGTATATCACGCGCTTCTGCAATCCAAGCCGACTGATGACTGGAGAGGATGGCTACTATTTCACCAATCTG|GATGTATAAGACACATGAAGGGAGAAATCTATGTGAAGATGGAGGCAGAGGCTGGAACAATGGATCAACAAACCAAGGAATGCCAAGGCCTGCTGGCTGTCACCAGAAGCgAGGAAGAGGCATGAACAGATTCTTCCTCAGAGTGCTCAGAAGGAGTCAACCCTGCTGACACCTTAATCGTGGACTTCCAGCCTGCAGAACTATGAGACAATAAATTTCTGTTGTTGAAGA AITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL|dv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7083 ENSG00000284461::ENSG00000227681 ENSG00000284461.2::ENSG00000227681.5 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284461 ENSG00000284461.2 protein_coding + + chr7:66628958-66811189:+ chr7:66805396:+ chr7:66093945-66276176:+ chr7:66270383:+ ENSG00000227681 ENSG00000227681.5 lncRNA + - chr6:147660703-147953937:+ chr6:147944966:- chr6:147981839-148275073:+ chr6:148266102:- chr7:66807212,chr7:66807213 chr6:147946876,chr6:147946875 NA NA chr7:66272199,chr7:66272200 chr6:148268012,chr6:148268011 NA NA sense antisense unknown 3'UTR/splice-site intron translocation/5'-5' high none none BTB_2(100%),DUF5601(100%),VPS9(62%),zf-A20(100%)| 16 10 29 672 31 ENST00000503687.2 unknown downstream downstream duplicates(6),mismatches(4),multimappers(1) GGCGATCACAG___ATATCATTGAAATGGATTCCAAGCGTGTGCCTCGAGACAAGCTGGCCTGCATCACCAAGTGCAGCAAGCACATCTTCAATGCCATCAAGATCACCAAGAATGAGCCGGCGTCAGCGGATGACTTCCTCCCCACCCTCATCTACATTGTTTTGAAGGGCAACCCCCCACGCCTTCAGTCTAATATCCAGTATATCACGCGCTTCTGCAATCCAAGCCGACTGATGACTGGAGAGGATGGCTACTATTTCACCAATCTG|GATGTATAAGACACATGAAGGGAGAAATCTATGTGAAGATGGAGGCAGAGGCTGGAACAATGGATCAACAAACCAAGGAATGCCAAGGCCTGCTGGCTGTCACCAGAAGCgAGGAAGAGGCATGAACAGATTCTTCCTCAGAGTGCTCAGAAGGAGTCAACCCTGCTGACACCTTAATCGTGGACTTCCAGCCTGCAGAACTATGAGACAATAAATTTCTGTTGTTGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7084 FNBP4::NUP160 ENSG00000109920.13::ENSG00000030066.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1233 TRUE 479 FNBP4 ENSG00000109920.13 protein_coding - - chr11:47716494-47767443:- chr11:47750916:- chr11:47738046-47788995:- chr11:47772468:- NUP160 ENSG00000030066.14 protein_coding - + chr11:47778087-47848555:- chr11:47822072:+ chr11:47799639-47870107:- chr11:47843624:+ chr11:47747123 chr11:47815110 NA NA chr11:47768675 chr11:47836662 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none WW_domain(48%)| WW(1%)| 11 17 23 745 987 ENST00000263773.10 unknown upstream upstream duplicates(18),mismappers(5),mismatches(10) GTTATTATTATTGGAATACACAAACAAATGAAGTGACTTGGGAGTTACCCCAATATCTTGCCACACAGGTACAGGGATTACAGCATTACCAGCCCAG___TTCTGTGCCAGGTGCTGAAACTAGTTTTGTGGTAAATACAGACATATATTCTAAGGAGAAAACGATTTCTGTTTCCAGTAGTAAAAGTGGACCAGTCATAGCCAAGCGAGAAGTTAAAAAG|GATGAATCAACCTACCTGAGAAGTGAACAGTGAAGAAATATGATCGAGACTATAGCGATTACTCTCAGTGCTCACCAACTGGAAAATGCAGAACTGTTAAAACACAAGATGATCATTTATTACCTGAAATAATCAACATGTTACTTTTCGAAGCAAGGGCTATTACCATTCAGAAACCTTTAAAAAAAAATTTTTTTTTTTTTGAAAGAAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCAG YYYWNTQTNEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKREVKK|destylrseq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7085 FNBP4::NUP160 ENSG00000109920.13::ENSG00000030066.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 701 TRUE 1233 TRUE 479 FNBP4 ENSG00000109920.13 protein_coding - - chr11:47716494-47767443:- chr11:47750916:- chr11:47738046-47788995:- chr11:47772468:- NUP160 ENSG00000030066.14 protein_coding - - chr11:47778087-47848555:- chr11:47813415:- chr11:47799639-47870107:- chr11:47834967:- chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123 chr11:47815119,chr11:47815142,chr11:47815143,chr11:47815165,chr11:47815168,chr11:47815151,chr11:47815182 NA NA chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675 chr11:47836671,chr11:47836694,chr11:47836695,chr11:47836717,chr11:47836720,chr11:47836703,chr11:47836734 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(48%)|Nucleoporin_Nup120/160(2%) WW(1%)|Nup160(0%) 2 2 5 745 593 ENST00000263773.10 ENST00000694866.1 upstream downstream duplicates(3),mismatches(1) AGGAAGTCTGGGATGAGAACACGGGATGTTATTATTATTGGAATACACAAACAAATGAAGTGACTTGGGAGTTACCCCAATATCTTGCCACACAGGTACAGGGATTACAGCATTACCAGCCCAG___TTCTGTGCCAGGTGCTGAAACTAGTTTTGTGGTAAATACAGACATATATTCTAAGGAGAAAACGATTTCTGTTTCCAGTAGTAAAAGTGGACCAGTCATAGCCAAGCGAGAAGTTAAAAAG|GGGTACCTGTCTTTCCTTATTCCCTCATCCTTAGTGGATCATTTGTATCTCCTGCCTTATGAGAACCTTTTGACAGAAGATGAGACAACCATATCTGATG___ATGTGGAtATCGCTCGGGATGTCATATGTCTTATAAAATGCCTCCGGCTGATTGAAGAGTCAGTAACTGTGGATATGTCAGTTATAATGGA EVWDENTGCYYYWNTQTNEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKREVKK|GYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICLIKCLRLIEESVTVDMSVIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7089 PEAK1::LINGO1 ENSG00000173517.11::ENSG00000169783.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 702 TRUE 1234 TRUE 480 PEAK1 ENSG00000173517.11 protein_coding - - chr15:77100656-77420144:- chr15:77365163:- chr15:77392998-77712486:- chr15:77657505:- LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77615900:- chr15:77905369-78113242:- chr15:77908242:- chr15:77362063,chr15:77362065 chr15:77659138,chr15:77659137 NA NA chr15:77654405,chr15:77654407 chr15:77951480,chr15:77951479 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |BspA_type_Leucine_rich_repeat_region_(6_copies)(100%),Immunoglobulin_I-set_domain(100%),Leucine_rich_repeat(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),LRR_5(100%),LRR_8(100%),ig(100%) 5 7 15 73 88 ENST00000560626.6 ENST00000355300.7 upstream downstream duplicates(4),low_entropy(1),mismatches(2),multimappers(1) GTCAGTTGCTCGGCGGCGGCGGCCGTGGTCACCAGGAAGGGGACGGGACGGACGGTGATGGTGGTCGCCGCGGCGGCGTGTGCGCCCCTCAG___GTATCTGCCCAAACTGGAACTTATGCTGTAGACATTTCTTTGTGGTTTATCTAAAAACCAAAG|GTGAGCAAGAGGATGCTGGCGGGGGGCGTGAGGAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGGTGCTGGGCTCAGTGCTGTCAGGCTCGGCCACGGGCTGCCCGCCCCGCTGCGAGTGCTCCGCCCAGGACCGCGCTGTGCTGTGCCACCGCAAGCGCTTTGTGGCAGTCCCCGAGGGCATCCCCACCGAGACGCGCCTGCTGGACCTAGGCAAGAACCGCATCAAAACGCTCAACCAGGACGAGTTCGCCAGCTTCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Pseudopodium-enriched atypical kinase 1 Other NKF3 Q9H792 FALSE NA NA NA NA NA NA TRUE Pancreas no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lower grade glioma CENTRAL_NERVOUS_SYSTEM no_match 77133005 FALSE 77690901 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7090 PEAK1::LINGO1 ENSG00000173517.11::ENSG00000169783.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 703 TRUE 1234 TRUE 480 PEAK1 ENSG00000173517.11 protein_coding - - chr15:77100656-77420144:- chr15:77420006:- chr15:77392998-77712486:- chr15:77712348:- LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77615900:- chr15:77905369-78113242:- chr15:77908242:- chr15:77362063,chr15:77362065 chr15:77659138,chr15:77659137 NA NA chr15:77654405,chr15:77654407 chr15:77951480,chr15:77951479 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |BspA_type_Leucine_rich_repeat_region_(6_copies)(100%),Immunoglobulin_I-set_domain(100%),Leucine_rich_repeat(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),LRR_5(100%),LRR_8(100%),ig(100%) 1 8 5 64 88 ENST00000560626.6 ENST00000355300.7 upstream downstream duplicates(3),mismatches(1) CGGCGAGCGGCCGGGAGCGCGCGGTGGACTCGGCCGCGGCGAGTAGTTAGTTAGTTGTTGTTAGTCAGTGTCAGTTGCTCGGCGGCGGCGGCCGTGGTCACCAGGAAGGGGACGGGACGGACGGTGATGGTGGTCGCCGCGGCGGCGTGTGCGCCCCTCAG|GTGAGCAAGAGGATGCTGGCGGGGGGCGTGAGGAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGGTGCTGGGCTCAGTGCTGTCAGGCTCGGCCACGGGCTGCCCGCCCCGCTGCGAGTGCTCCGCCCAGGACCGCGCTGTGCTGTGCCACCGCAAGCGCTTTGTGGCAGTCCCCGAGGGCATCCCCACCGAGACGCGCCTGCTGGACCTAGGCAAGAACCGCATCAAAACGCTCAACCAGGACGAGTTCGCCAGCTTCCCGCACCTGGAGGAGCTGGAGCTCAACGAGAACATCGTGAGCGCCGTGGAGCCCGGCGCCTTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Pseudopodium-enriched atypical kinase 1 Other NKF3 Q9H792 FALSE NA NA NA NA NA NA TRUE Pancreas no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lower grade glioma CENTRAL_NERVOUS_SYSTEM no_match 77133005 FALSE 77690901 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7091 PCNX2::ASXL3 ENSG00000135749.20::ENSG00000141431.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 704 FALSE NA FALSE NA PCNX2 ENSG00000135749.20 protein_coding - - chr1:232983435-233295725:- chr1:233160283:- chr1:233119181-233431471:- chr1:233296029:- ASXL3 ENSG00000141431.14 protein_coding + + chr18:33578219-33751195:+ chr18:33607594:+ chr18:31158183-31331159:+ chr18:31187558:+ chr1:233160141,chr1:233160144 chr18:33602376,chr18:33602373 NA NA chr1:233295887,chr1:233295890 chr18:31182340,chr18:31182337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Asx_homology_domain(100%),HB1__ASXL__restriction_endonuclease_HTH_domain(87%),PHD_domain_of_transcriptional_enhancer__Asx(100%) |ASXH(100%),HARE-HTH(56%),PHD_3(100%) 3 11 9 13 31 ENST00000258229.14 ENST00000592541.6 upstream upstream duplicates(9),mismatches(1) GTCTGCGCAGTGGTTGCTGTCCTCTCATTTGCAGTCAGCGCCAGCACTGTATTCCTGTCATTGCGA___CCATTTCTCAGCATCGTGCTGTTTGCCTTGGCTGGAGCCGTGGGGTTTGTAACACATTACGTGCTCCCTCAGCTCCGCAAGCATCATCCCTGGATGTGGATTTCACACCCCATTCTCAAAAACAAAGAGTATCATCAACGGGAAGTGAGAG|GCACTAGAAAAACACCCCAACTCACCAATGACAGCAAAGCAGATATTGGAAGTCATTCAGAAAGAAGGGTTAAAAGAAACAAG___ACCCCGGCATGGCTTGGAGACAGCGTTGGTGTGTATGAAGGATCTTCCTCCAATGAAGGATTTGGGACAACTTTCCATGATGATTATATTAGAGCCTCAGCTGCTTTCGTGTTGGTCATGAGGTGATGCTGAAC...___AAA___TGGAACCTCTCCATTAGCCTGTCTGAATGCAATGCTTCACACTAACACTCGAATAGGG VCAVVAVLSFAVSASTVFLSLRPFLSIVLFALAGAVGFVTHYVLPQLRKHHPWMWISHPILKNKEYHQREVR|gtrktpqltndskadigshserrvkrnktpawlgdsvgvyegsssnegfgttfhddyirasaafvlvmr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7092 ARID2::SCAF11 ENSG00000189079.18::ENSG00000139218.18 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1235 TRUE 481 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45860949:+ chr12:46123489-46301823:+ chr12:46254732:+ SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45975734:- chr12:46312914-46385903:- chr12:46369517:- chr12:45870225,chr12:45870226,chr12:45870226 chr12:45979173,chr12:45979108,chr12:45979172 NA NA chr12:46264008,chr12:46264009,chr12:46264009 chr12:46372956,chr12:46372891,chr12:46372955 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none ARID/BRIGHT_DNA_binding_domain(100%),RFX_DNA-binding_domain(100%)|Ring_finger_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%) ARID(100%),RFX_DNA_binding(100%)|zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_2(100%),zf-RING_UBOX(100%) 4 3 13 84 19 ENST00000334344.11 ENST00000266589.10 downstream downstream duplicates(3),mismappers(1) AGTGCTGTTCAGCAAAAGCAACAGCATCCACCAACATATGTACAGAATGTGGTCCCGCAG___AACACTCCTATGCCACCTTCACCAGCTGTACAAGTGCAGGGCCAGCCTAACAGTTCTCAGCCTTCTCCATTCAGTGGATCCAGTCAGCCTGGAGATCCAATGAGAAAACCTGGACAGAACTTCATGTGTCTGTGGCAGTCTTGTAAAAA|TATTGAAATTAGACCAAACAGCCTTGTCACTGATATGAAGAAAGTTTGCCTGATCTGGGTAGAAGGTCAAACCAGTCGTAACATTCTCTTAACTCAAAGCCTAATCCAGAGCGCGTCTCTAACGCTCTTCAAG...CTGCAGAAGAAAAGTTTGAAGCTAGCAGAGGTTGGTTCATGAAGTTTAAGGAAAGAAGCCATCTCCATAACATAAAAGTGCAAGGCGAAGCAGCAAGTGGTGATGCGGAAGCTGCATCAGGTTATCCAG...CTATACTAAACAAAAGATTTTTAATGCAGATGAGCCAGCCTTCTATTGAAAGTAGATGCCATCCAGGACTTTCATAAGTAGAGAGGAGAAGTCAATGCCTG SAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQPGDPMRKPGQNFMCLWQSCKn|ieirpnslvtdmkkvcliwvegqtsrnilltqsliqsasltlf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma,Rectum adenocarcinoma SKIN,RECTUM no_match 46125097,46125097 FALSE,FALSE 46357971,46357971 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 7093 ARID2::SCAF11 ENSG00000189079.18::ENSG00000139218.18 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 705 TRUE 1235 TRUE 481 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45860949:+ chr12:46123489-46301823:+ chr12:46254732:+ SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45964188:- chr12:46312914-46385903:- chr12:46357971:- chr12:45870225,chr12:45870226,chr12:45870226 chr12:45979173,chr12:45979108,chr12:45979172 NA NA chr12:46264008,chr12:46264009,chr12:46264009 chr12:46372956,chr12:46372891,chr12:46372955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ARID/BRIGHT_DNA_binding_domain(100%),RFX_DNA-binding_domain(100%)|Ring_finger_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%) ARID(100%),RFX_DNA_binding(100%)|zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_2(100%),zf-RING_UBOX(100%) 6 4 10 84 467 ENST00000334344.11 ENST00000395453.2 downstream downstream duplicates(4) GTAGCAATAGAAAGTGCTGTTCAGCAAAAGCAACAGCATCCACCAACATATGTACAGAATGTGGTCCCGCAG___AACACTCCTATGCCACCTTCACCAGCTGTACAAGTGCAGGGCCAGCCTAACAGTTCTCAGCCTTCTCCATTCAGTGGATCCAGTCAGCCTGGAGATCCAATGAGAAAACCTGGACAGAACTTCATGTGTCTGTGGCAGTCTTGTAAAAA|GAAACCCTTTTCCAAAGAGAAATGAAGAAGAAAACTGTATGTACCCTAAATATGGGAGATAAGAAGTATGAAGACATGGAAG___GTGAAGAAAACGGAGATAATACTATTTCCACTGGTCTGTTGTACAGTGAGGCTGACAGATGCCCAATATGTCTTAATTGTCTATTAGAAAAGGAAGTTGGTTTTCCAGAAAGCTGTAATCATGTCTTCTGTATGACTTGTATTCTTAAATGGGCAGAG___...TTTCTTCTTTATATCAGCCTTGTGGAATAACCAGAGCAGATACGATAGTGTCCTTCCATTTTACAGATGAGGAAACTTGGATTTTAT VAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQPGDPMRKPGQNFMCLWQSCKk|kpfskek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma,Rectum adenocarcinoma SKIN,RECTUM no_match 46125097,46125097 FALSE,FALSE 46357971,46357971 TRUE,TRUE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 7094 LIN52::PAPLN ENSG00000205659.12::ENSG00000100767.17 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 706 TRUE 1236 TRUE 482 LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73244644:+ chr14:73704205-73741348:+ chr14:73711352:+ chr14:74128092,chr14:74128093 chr14:73243764,chr14:73243762 NA NA chr14:74594795,chr14:74594796 chr14:73710472,chr14:73710470 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Retinal_tissue_protein(86%)|ADAM-TS_Spacer_1(100%),Immunoglobulin_I-set_domain(100%),Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%),Linking_region_between_Kunitz_BPTI_and_I-set_on_papilin(100%),PLAC_(protease_and_lacunin)_domain(100%),Thrombospondin_type_1_domain(100%) LIN52(9%)|ADAM_CR_3(100%),ADAM_spacer1(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Kunitz_BPTI(100%),PLAC(100%),Papilin_u7(100%),TSP1_ADAMTS(100%),TSP_1(100%),ig(100%) 6 5 8 200 21 ENST00000555028.7 ENST00000340738.9 downstream upstream duplicates(5) ATCTGGAAGCATCTTTGCTAAGTTTTGAAAAACTTGACCGTGCCTCACCAGATCTTTGGCCAGAACAAT___TACCAGGTGTTGCTGAATTTGCAGCTTCCTTCAAAAGT___CCTATTACTAGTTCTCCACCCAAATGGATGGCTGAGATAGAACGTGATGACATCGACATGTTGAAAG___AACTGGGGAGTCTCACCACGGCTAATTTGATGGAGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTGGGGCTGGATGAGT|GCTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGgGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAG___GGGTTGTTCCTGAGAACCCTATGTGAtGAGGAATGAGAGACCAGGAATGAT LEASLLSFEKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDE|csqgeaae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7095 LIN52::PAPLN ENSG00000205659.12::ENSG00000100767.17 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1236 TRUE 482 LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74097860:+ chr14:74551659-74668196:+ chr14:74564563:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73244644:+ chr14:73704205-73741348:+ chr14:73711352:+ chr14:74128092,chr14:74128093 chr14:73243764,chr14:73243762 NA NA chr14:74594795,chr14:74594796 chr14:73710472,chr14:73710470 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Retinal_tissue_protein(58%)|ADAM-TS_Spacer_1(100%),Immunoglobulin_I-set_domain(100%),Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%),Linking_region_between_Kunitz_BPTI_and_I-set_on_papilin(100%),PLAC_(protease_and_lacunin)_domain(100%),Thrombospondin_type_1_domain(100%) LIN52(6%)|ADAM_CR_3(100%),ADAM_spacer1(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Kunitz_BPTI(100%),PLAC(100%),Papilin_u7(100%),TSP1_ADAMTS(100%),TSP_1(100%),ig(100%) 1 0 6 232 21 ENST00000555028.7 ENST00000340738.9 downstream upstream duplicates(1),mismatches(1) CTCCCACAGACG___GGACAGATCTGGAAGCATCTTTGCTAAGTTTTGAAAAACTTGACCGTGCCTCACCAGATCTTTGGCCAGAACAAT___TACCAGGTGTTGCTGAATTTGCAGCTTCCTTCAAAAGT___CCTATTACTAGTTCTCCACCCAAATGGATGGCTGAGATAGAACGTGATGACATCGACATGTTGAAAG|GCTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGgGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAG___GAGAGATGGAGGCTCCAGCTGCGTGGGCgggGCCC PTDGTDLEASLLSFEKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLK|gsqgeaae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7096 LIN52::PAPLN ENSG00000205659.12::ENSG00000100767.17 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1236 TRUE 482 LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73249984:+ chr14:73704205-73741348:+ chr14:73716692:+ chr14:74128092,chr14:74128093 chr14:73243764,chr14:73243762 NA NA chr14:74594795,chr14:74594796 chr14:73710472,chr14:73710470 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Retinal_tissue_protein(86%)|ADAM-TS_Spacer_1(100%),Immunoglobulin_I-set_domain(100%),Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%),Linking_region_between_Kunitz_BPTI_and_I-set_on_papilin(100%),PLAC_(protease_and_lacunin)_domain(100%),Thrombospondin_type_1_domain(81%) LIN52(9%)|ADAM_CR_3(20%),ADAM_spacer1(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Kunitz_BPTI(100%),PLAC(100%),Papilin_u7(100%),TSP1_ADAMTS(100%),TSP_1(56%),ig(100%) 1 0 2 200 35 ENST00000555028.7 ENST00000340738.9 downstream upstream none GCGTCTCCCACAGACG___GGACAGATCTGGAAGCATCTTTGCTAAGTTTTGAAAAACTTGACCGTGCCTCACCAGATCTTTGGCCAGAACAAT___TACCAGGTGT...AGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTGGGGCTGGATGAGT|CCCCAAACAAGTGTGAACTGAACTGCATTCCCAAGGGGGAGAACTTCTAC KVRGLQNLAYQLGLDE|sPNKCELNCIPKGENF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7104 ZC3H3::ENSG00000254812 ENSG00000014164.7::ENSG00000254812.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZC3H3 ENSG00000014164.7 protein_coding - - chr8:143437659-143541447:- chr8:143507746:- chr8:144519829-144623617:- chr8:144589916:- ENSG00000254812 ENSG00000254812.3 lncRNA - - chr8:143620586-143633756:- chr8:143620900:- chr8:144702756-144715926:- chr8:144703070:- chr8:143479007,chr8:143479245,chr8:143479254 chr8:143622651,chr8:143622748,chr8:143622749 NA NA chr8:144561177,chr8:144561415,chr8:144561424 chr8:144704821,chr8:144704918,chr8:144704919 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 4 4 5 179 25 ENST00000262577.6 ENST00000692495.1 upstream downstream duplicates(5),mismatches(2) GGGGGACAGACCAGCAGTAGGACACAGTGGCTTGAAGCCCCTCTCTGGGGAGACCCCGCTCTCGGCTTACAAAGTGAAGAGCCGCACCAAGATCATCCGGAGACGCgGCAGCACAAG___CCTTCCTGGAGACAAGAAAAGCGGCACCTCACCTGCCGCCACCGCCAAGAGCCACCTCAGCCTCCGGCGGAGACAGGCCCTCAGGGGGAAGAGCA...CGACTATGTCGCCTGCCACCGAGCCGGGCCCACCTCCCCACCAAGGAAG___CGTCCAGCCTGCATGCCGTGCGGACTGCACCCACCAGCAAGGTGATCAAGACCCGCTACCGCATTGTCAAGAAGACGCCGGCCTCGCCTCTCAGCGCCCCGCCCTTCCCCCTGTCTCTGCCCTCCTGGCGGGCCCGGCGGCTCTCACTATCCAG|CACTGGGAAGCCTGAAGGAGCATGAGAAAGACTGTTGCTGTAAGACACGGCGCTATCTATGGCCTGAATgTTTGTTATCTGTTGAAATCCTAACCCCGAAGG...AGGACTTTGGGATGGGATGACTGCTCTCATAAAGGAGGCTAGAGAAAGGCTCCTGGCCCTTTCCAGCAGGCGAGGACACAGATGCCATCTTGAACCAGGAAGTGGCCACACCAGA RLCRLPPSRAHLPTKEASSLHAVRTAPTSKVIKTRYRIVKKTPASPLSAPPFPLSLPSWRARRLSLSs|tgkpega* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7107 EZH1::BECN1 ENSG00000108799.13::ENSG00000126581.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1238 TRUE 483 EZH1 ENSG00000108799.13 protein_coding - - chr17:42700275-42745049:- chr17:42727635:- chr17:40852293-40897067:- chr17:40879653:- BECN1 ENSG00000126581.13 protein_coding - - chr17:42810134-42833350:- chr17:42825262:- chr17:40962152-40985367:- chr17:40977279:- chr17:42727347,chr17:42727349 chr17:42830654,chr17:42830655 NA NA chr17:40879365,chr17:40879367 chr17:40982671,chr17:40982672 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none WD_repeat_binding_protein_EZH2(100%)|Apg6_BARA_domain(100%),Apg6_coiled-coil_region(100%),Beclin-1_BH3_domain__Bcl-2-interacting(100%) EZH2_WD-Binding(100%)|APG6(100%),APG6_N(100%),BH3(100%) 2 2 2 78 7 ENST00000428826.7 ENST00000612631.1 upstream downstream duplicates(1) GGGATGGAGG___CTGGACACCTGTTCTGCTGTTGTGTCCTGCCATTCTCCTGAAGAACAGAGGCACACTGTAAAACCCAACACTTCCCCTTGCATTCTATAAG___ATTACAGCAAGATGGAAATACCAAATCCCCCTACCTCCAAATGTATCACTTACTG...CTTAAACGGCTTCAGGCAAATATGGGTGCAAAG___GCTTTGTATGTGGCAAATTTTGCAAAGGTTCAAaAAAAAACCaAaATCCTCAATGAAGAATGGAAGAAGCTTCGTGTCCAACCTGTTCAGTCAATGAAGCCTGTGAGTGGACACCCTTTTCTCAAAAAG|CCACACCAGCCTCTGCTAATCCCCAAACAGGTACCCTCTGTGCTCTTGCTGTTCCCTTGGCCTAGAATGCTCTTCCTTAAGATGCAGGTAAGAATTCCTTCCTCACCTTCTTCAAGCTTTTATTTGAATATCACTTTCT...___CCCGGCCTCTGGGGGCCGCTGCCGGGCCTGTGAGCCTGTGGACCAGGAGCTCCTGCTGCCGTCGTAGCGTCACG LKRLQANMGAKALYVANFAKVQkKTkILNEEWKKLRVQPVQSMKPVSGHPFLKK|phqpllipkqvpsvlllfpwprmlflkmqvripsspsssfylnitf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6781 chr17:42823880-42823943:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7108 EZH1::BECN1 ENSG00000108799.13::ENSG00000126581.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1238 TRUE 483 EZH1 ENSG00000108799.13 protein_coding - - chr17:42700275-42745049:- chr17:42727635:- chr17:40852293-40897067:- chr17:40879653:- BECN1 ENSG00000126581.13 protein_coding - - chr17:42810134-42833350:- chr17:42825232:- chr17:40962152-40985367:- chr17:40977249:- chr17:42727347,chr17:42727349 chr17:42830654,chr17:42830655 NA NA chr17:40879365,chr17:40879367 chr17:40982671,chr17:40982672 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none WD_repeat_binding_protein_EZH2(100%)|Apg6_BARA_domain(100%),Apg6_coiled-coil_region(100%),Beclin-1_BH3_domain__Bcl-2-interacting(100%) EZH2_WD-Binding(100%)|APG6(100%),APG6_N(100%),BH3(100%) 0 3 2 78 10 ENST00000428826.7 ENST00000612631.1 upstream downstream duplicates(1) CTTAAACGGCTTCAGGCAAATATGGGTGCAAAG___GCTTTGTATGTGGCAAATTTTGCAAAGGTTCAAaAAAAAACCaAaATCCTCAATGAAGAATGGAAGAAGCTTCGTGTCCAACCTGTTCAGTCAATGAAGCCTGTGAGTGGACACCCTTTTCTCAAAAAG|GTACCCTCTGTGCTCTTGCTGTTCCCTTGGCCTAGAATGCTCTTCCTTAAGATGCAGGTAAGAATTCCTTCCTCACCTTCTTCAAG...___CCCGGCCTCTGGGGGCCGCTGCCGGGCCTGTGAGCCTGTGGACCAGGAGCTCCTGCTGCCGTCGTAGCGTCACG...CTCCTCGCCAGGATGGTGTCTCTCGCAGATTCATCCCCCCAGCCAG___GATGATGTCCACAGAAAGTGCCAACAGCTTCACTCTGATTGGGGAGGCATCTGAT LKRLQANMGAKALYVANFAKVQkKTkILNEEWKKLRVQPVQSMKPVSGHPFLKK|vpsvlllfpwprmlflkmqvripsspss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6781 chr17:42823880-42823943:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7109 EZH1::BECN1 ENSG00000108799.13::ENSG00000126581.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1238 TRUE 483 EZH1 ENSG00000108799.13 protein_coding - - chr17:42700275-42745049:- chr17:42727635:- chr17:40852293-40897067:- chr17:40879653:- BECN1 ENSG00000126581.13 protein_coding - - chr17:42810134-42833350:- chr17:42827341:- chr17:40962152-40985367:- chr17:40979358:- chr17:42727347,chr17:42727349 chr17:42830654,chr17:42830655 NA NA chr17:40879365,chr17:40879367 chr17:40982671,chr17:40982672 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none WD_repeat_binding_protein_EZH2(100%)|Apg6_BARA_domain(100%),Apg6_coiled-coil_region(100%),Beclin-1_BH3_domain__Bcl-2-interacting(100%) EZH2_WD-Binding(100%)|APG6(100%),APG6_N(100%),BH3(100%) 1 0 2 78 2 ENST00000590078.5 ENST00000589636.5 upstream downstream duplicates(1) CTGGACACCTGTTCTGCTGTTGTGTCCTGCCATTCTCCTGAAGAACAGAGGCACACTGTAAAACCCAACACTTCCCCTTGCATTCTATA...CTTAAACGGCTTCAGGCAAATATGGGTGCAAAG___GCTTTGTATGTGGCAAATTTTGCAAAGGTTCAAaAAAAAACCaAaATCCTCAATGAAGAATGGAAGAAGCTTCGTGTCCAACCTGTTCAGTCAATGAAGCCTGTGAGTGGACACCCTTTTCTCAAAAAG|AAGCCCGTTACTTCTCTATGCGTTTCTGAGATGTTAGGGACAGC MKPVSGHPFLKK|kpvtslcvsemlgt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6781 chr17:42823880-42823943:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7110 EZH1::BECN1 ENSG00000108799.13::ENSG00000126581.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1238 TRUE 483 EZH1 ENSG00000108799.13 protein_coding - - chr17:42700275-42745049:- chr17:42727635:- chr17:40852293-40897067:- chr17:40879653:- BECN1 ENSG00000126581.13 protein_coding - - chr17:42810134-42833350:- chr17:42823879:- chr17:40962152-40985367:- chr17:40975897:- chr17:42727347,chr17:42727349 chr17:42830654,chr17:42830655 NA NA chr17:40879365,chr17:40879367 chr17:40982671,chr17:40982672 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none WD_repeat_binding_protein_EZH2(100%)|Apg6_BARA_domain(100%),Apg6_coiled-coil_region(100%),Beclin-1_BH3_domain__Bcl-2-interacting(100%) EZH2_WD-Binding(100%)|APG6(100%),APG6_N(100%),BH3(100%) 0 2 0 78 563 ENST00000428826.7 ENST00000590099.6 upstream downstream none TTCGTGTCCAACCTGTTCAGTCAATGAAGCCTGTGAGTGGACACCCTTTTCTCAAAAAG|GGATGGAAGGGTCTAAGACGTCCAACAACAGCACCATGCAGGTGAGCTTCGTGTGCCAGCGCTGCAGCCAGCCCCTGAAACTGGACACGAGTTTCAAGATCCTGGACCGTGTCACCATCCAGGAACTCACAG___CTCCATTACTTACCACAGCCCAGGCGAAACCAGGAGAGgCCCAGGAGGAAGAGACTAAC RVQPVQSMKPVSGHPFLKK|gwkglrrpttapcr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7111 VMP1::TBC1D3P1-DHX40P1 ENSG00000062716.13::ENSG00000267104.2 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VMP1 ENSG00000062716.13 protein_coding + - chr17:59707192-59842255:+ chr17:59828991:- chr17:57784553-57919616:+ chr17:57906352:- TBC1D3P1-DHX40P1 ENSG00000267104.2 lncRNA - - chr17:59962363-60018975:- chr17:59976770:- chr17:58039724-58096336:- chr17:58054131:- chr17:59809131,chr17:59809152 chr17:59978984,chr17:59978986 NA NA chr17:57886492,chr17:57886513 chr17:58056345,chr17:58056347 NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 1 0 3 11 123 unknown ENST00000587125.1 upstream downstream duplicates(1),mismappers(5) TGCTGACTCATTAATATCTACAGCCTTTCAGCCCTTTATTAATCCAGAATAAGTAAATGAACAGGTGCTAACTGAAAATAAACACATATTcAACCTAGTAA...CTTTTTGTTTTGTTTTGTTTTGTTTTTGGAGACGGAGTCTGGCTCTATCACCCACGATGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTTCACCTCCCGGCTTCAAGCGATTCTCCTGCCTCAACCCCCTGAGTAGCTGGGATTACAG|TTGATCCAGAGTACCAGAAGGAAGCAGAACAGAGACATCGAGAATTGGCAGCTAAAGCTGGAGGATTTAATGACTTTGCAACTTTAGCTGTCATCTTTGAACAATGCAAATCAAG___TGGAGCTCCAGCTTCATGGTGCCAAAAACACTGGATTCATTGGAGGTGCTTATTTTCTGCATTTCGTGTGGAAGCTCAACTTCGAGAACTAATCAGGAAGCTTAAACAG___GAGACAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7112 VMP1::DHX40P1 ENSG00000062716.13::ENSG00000266992.1 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VMP1 ENSG00000062716.13 protein_coding + - chr17:59707192-59842255:+ chr17:59828991:- chr17:57784553-57919616:+ chr17:57906352:- DHX40P1 ENSG00000266992.1 transcribed_unprocessed_pseudogene - - chr17:59976009-60002384:- chr17:59976770:- chr17:58053370-58079745:- chr17:58054131:- chr17:59809131,chr17:59809152 chr17:59978984,chr17:59978986 NA NA chr17:57886492,chr17:57886513 chr17:58056345,chr17:58056347 NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 1 0 3 11 123 unknown ENST00000588725.1 upstream downstream duplicates(1),mismappers(4) TGCTGACTCATTAATATCTACAGCCTTTCAGCCCTTTATTAATCCAGAATAAGTAAATGAACAGGTGCTAACTGAAAATAAACACATATTcAACCTAGTAA...CTTTTTGTTTTGTTTTGTTTTGTTTTTGGAGACGGAGTCTGGCTCTATCACCCACGATGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTTCACCTCCCGGCTTCAAGCGATTCTCCTGCCTCAACCCCCTGAGTAGCTGGGATTACAG|TTGATCCAGAGTACCAGAAGGAAGCAGAACAGAGACATCGAGAATTGGCAGCTAAAGCTGGAGGATTTAATGACTTTGCAACTTTAGCTGTCATCTTTGAACAATGCAAATCAAG___TGGAGCTCCAGCTTCATGGTGCCAAAAACACTGGATTCATTGGAGGTGCTTATTTTCTGCATTTCGTGTGGAAGCTCAACTTCGAGAACTAATCAGGAAGCTTAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7117 NCKAP5::CFAP47 ENSG00000176771.18::ENSG00000165164.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1239 TRUE 484 NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133129978:- chr2:133429361-134326034:- chr2:133887550:- CFAP47 ENSG00000165164.14 protein_coding + + chrX:35919734-36385317:+ chrX:35926017:+ chrX:35937851-36403432:+ chrX:35944134:+ chr2:133019121,chr2:133019123 chrX:35921425,chrX:35921423 NA NA chr2:133776694,chr2:133776696 chrX:35939542,chrX:35939540 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 0 1 2 21 4 ENST00000409261.6 ENST00000378653.8 upstream upstream duplicates(1),mismatches(1) GAACAAGTGAGGGGGCCATG___CATGAGAAGCTGATACATGAACTGGAAGAGGAGAGACACTTACGTCTTCAAAGCGAGAAGCGGTTGCAGGAGGTGACCCTAGAGTCTGAACGCAACAGAATTCAGATGCGTAGCTTGCAGCAGCAGTTCTCCAG|TTCAAACTGATGTTGACCAGTCTGGATAAAGAACTTGCTTCTGGCCTTCAGATGACAGCTATGGTGGAATATCATCCTGATAAAGACGAAGACACTTTTGACCGGCTACTTATTTCAATAGAAAATAAAAC...ATCCTGTCAATTGGAAATTGAATCAGTAGTTAATTTTGGCACACTGGTTGCCAATAGTAAAGTATATTCTAAAGAGATTACTATCACTAACCATGGCAAAG TSEGAMHEKLIHELEEERHLRLQSEKRLQEVTLESERNRIQMRSLQQQFSs|sn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7118 NCKAP5::CFAP47 ENSG00000176771.18::ENSG00000165164.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1239 TRUE 484 NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133213716:- chr2:133429361-134326034:- chr2:133971288:- CFAP47 ENSG00000165164.14 protein_coding + + chrX:35919734-36385317:+ chrX:35926017:+ chrX:35937851-36403432:+ chrX:35944134:+ chr2:133019121,chr2:133019123 chrX:35921425,chrX:35921423 NA NA chr2:133776694,chr2:133776696 chrX:35939542,chrX:35939540 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none none 0 1 0 25 4 ENST00000409261.6 ENST00000378653.8 upstream upstream none CCCGACTACAGCGAGAAGTTGCCCAAAGAACAAGTGAGGGGGCCATG|TTCAAACTGATGTTGACCAGTCTGGATAAAGAACTTGCTTCTGGCCTTCAGATGACAGCTATGGTGGAATATCATCCTGATAAAGACGAAGACACTTTTGAaCGGCTACTTATTTCAATAGAAAATAAAACAACAGAAATTCCTCTAATTGGG RLQREVAQRTSEGAM|FKLMLTSLDKELASGLQMTAMVEYHPDKDEDTFeRLLISIENKTTEIPLI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7119 LNCRNA-IUR::ENSG00000254734 ENSG00000245552.9::ENSG00000254734.1 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1240 FALSE NA LNCRNA-IUR ENSG00000245552.9 lncRNA + + chr11:95150539-95234391:+ chr11:95157803:+ chr11:94883703-94967555:+ chr11:94890967:+ ENSG00000254734 ENSG00000254734.1 lncRNA + + chr11:29713909-29881714:+ chr11:29881482:+ chr11:29735456-29903261:+ chr11:29903029:+ chr11:95180651,chr11:95180651,chr11:95180651,chr11:95180649 chr11:29810882,chr11:29810886,chr11:29810888,chr11:29810877 NA NA chr11:94913815,chr11:94913815,chr11:94913815,chr11:94913813 chr11:29832429,chr11:29832433,chr11:29832435,chr11:29832424 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 1 1 12 1 ENST00000534864.6 ENST00000530249.1 downstream upstream none CGGCGGACTCCTCGCAAG___GCCTCAAACTTCTTCATGGGAAAAGATGGCTTCTCTTTTTTAATTGAATGAACTAGAAGAAGTTCATTGTTATTCATCAACTTCAAAGAGACTATATGAGGCCCCTTGGCCAGGACTACAGAGCAGTATTTTTTAATCAGAAATTATAGCCAAAAAGAAGAGACCAGAACACATGG|ACAGACACAACCCAGACTCGTGACTTATGCCTCAACAAGACCTTGGGCTTCCACCCAGAGAAGGAtTCAGTGCACAAGGATCATTTTTCTTACCCTTATCATAGCATCCACAACCAATTGGCAGTACCCATcCCCTAACCCCTGCCCACTAAACCACCCTTAAAAcCCCCTAACTTCCAAGGCTTTAGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7131 GAB2::B3GNT6 ENSG00000033327.13::ENSG00000198488.10 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78318143:- chr11:77926339-78129394:- chr11:78029189:- B3GNT6 ENSG00000198488.10 protein_coding + + chr11:77034398-77041973:+ chr11:77039552:+ chr11:76745442-76753020:+ chr11:76750596:+ chr11:78313209,chr11:78313206,chr11:78313203,chr11:78313199,chr11:78313194,chr11:78313174,chr11:78313214,chr11:78313212 chr11:77035508,chr11:77035508,chr11:77035508,chr11:77035508,chr11:77035508,chr11:77035508,chr11:77035508,chr11:77035508 NA NA chr11:78024255,chr11:78024252,chr11:78024249,chr11:78024245,chr11:78024240,chr11:78024220,chr11:78024260,chr11:78024258 chr11:76746552,chr11:76746552,chr11:76746552,chr11:76746552,chr11:76746552,chr11:76746552,chr11:76746552,chr11:76746552 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none PH_domain(17%)|Galactosyltransferase(100%) PH(72%)|Galactosyl_T(100%) 0 1 1 0 10 ENST00000526030.1 ENST00000622824.1 upstream upstream none CAAAAAGAAGTCTCCCTCAATTATCAACTCTCTGATGGATTTTCCCTG|ATGGCTTTTCCCTGCCGCAGGTCCCTGACTGCCAAGACTCTGGCCTGCCTCCTGGTGGGCGTGAGTTTCTTAGCACTGCAGCAGTGGTTCCTCCAGGCGCCAAGGTCCCCGCGGGAGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7138 CAPZA2::MET ENSG00000198898.16::ENSG00000105976.16 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1241 FALSE NA CAPZA2 ENSG00000198898.16 protein_coding + + chr7:116811070-116922049:+ chr7:116862650:+ chr7:116451124-116562103:+ chr7:116502704:+ MET ENSG00000105976.16 protein_coding + + chr7:116672196-116798377:+ chr7:116755355:+ chr7:116312250-116438431:+ chr7:116395409:+ chr7:116890780 chr7:116748201 NA NA chr7:116530834 chr7:116388255 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |IPT/TIG_domain(97%),Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),TIG(31%) 0 2 0 16903 10284 ENST00000361183.8 ENST00000318493.11 downstream upstream duplicates(2) GGCGGATCTGGAGGAGCAGTTGTCTGATGAAGAGAAG|GTTTTCCCAAATAGTGCACCCCTTGAAGGAGGGACAAGGCTGACCATATGTGGCTGGGACTTTG...TTAAGTGAGAGCACGATGAATAC___ATTGAAATGCACAGTTGGTCCTGCCATGAATAAGCATTTCAATATGTCCATAATTATTTCAAATGGCCACGGGACAAC ADLEEQLSDEEK|VFPNSAPLEGGTRLTICGWDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Hepatocyte growth factor receptor TK Met P08581 TRUE Stomach,Lung,Kidney,Uterus_corpus,Brain,Liver exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Kidney renal papillary cell carcinoma LUNG,BREAST,KIDNEY no_match 116528244|116502704,116550365,116528244|116502704 FALSE|TRUE,FALSE,FALSE|TRUE 116414935|116435709,116409699,116395409|116395409 FALSE|FALSE,FALSE,TRUE|TRUE PARTIALLY,YES,PARTIALLY In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE met proto-oncogene (hepatocyte growth factor receptor) 1 Yes papillary renal, head-neck squamous cell papillary renal familial papillary renal cancer epithelial oncogene missense 7144 GULP1::LINC01090 ENSG00000144366.17::ENSG00000231689.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GULP1 ENSG00000144366.17 protein_coding + + chr2:188291669-188595931:+ chr2:188293112:+ chr2:189156396-189460658:+ chr2:189157839:+ LINC01090 ENSG00000231689.3 lncRNA - + chr2:187712816-188384365:- chr2:188244829:+ chr2:188577543-189249092:- chr2:189109556:+ chr2:188346872,chr2:188346872 chr2:188224827,chr2:188224824 NA NA chr2:189211599,chr2:189211599 chr2:189089554,chr2:189089551 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 13 2 4 177 42 ENST00000359135.7 unknown downstream upstream duplicates(2) GCGCGGCGcGGGTGATGAGCCCTTGGGTTCTCGCTCCGACTGCTAAATTCGCTTGGCCGGGTCCACCTTCTCGTGGCCTCACTCGCCACACGGATCAGAATCCGGAGCAGGCAGTTCTCTCTATTCTGAGGCTCCTGCGGCTGCCGCGCTGACTTCCCTGTGTGCGGGAGGGAACTCTGGGCAGGCTGGTTTTCTTGGAATGTGTTTACGATGTTGAATGGGACTTGAACAGGAAGCTGGACGCTGCAGCTGGAACTAGCGTGCCAAG|AAGACTGAACATTTCCTGACAAGAAGATTAAAGAGACAGCTTTTATAAGGAAAAAATAGCAACTACAAAATCATCATCCTAAATTCATATCACTAAGAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7145 LGR4::LIN7C ENSG00000205213.14::ENSG00000148943.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 709 FALSE NA FALSE NA LGR4 ENSG00000205213.14 protein_coding - - chr11:27365961-27472790:- chr11:27412789:- chr11:27387508-27494337:- chr11:27434336:- LIN7C ENSG00000148943.12 protein_coding - - chr11:27494418-27506769:- chr11:27501920:- chr11:27515965-27528316:- chr11:27523467:- chr11:27401224,chr11:27401232 chr11:27503398,chr11:27503403 NA NA chr11:27422771,chr11:27422779 chr11:27524945,chr11:27524950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Leucine_rich_repeat(9%),Leucine_rich_repeat_N-terminal_domain(100%)|L27_domain(100%),PDZ_domain(100%) LRRNT(100%),LRR_5(0%),LRR_8(50%)|L27(100%),PDZ(100%),PDZ_6(100%) 3 11 5 3769 2783 ENST00000379214.9 ENST00000278193.7 upstream downstream duplicates(2),mismatches(3) GCCGTGCCCGAGGGGCTCAGCGCCTTCACCCAAGCGCT___GGATATCAGTATGAACAACATTACTCAGTTGCCAGAAGATGCATTTAAGAACTTTCCTTTTCTAGAAGAGCT|ATATTTGTAGAGCAATTGAATTATTGGAAAAACTACAAAGGAGTGGAGAAGTACCACCACAGAAACTTCAGGCTTTGCAAAGAGTCCTTCAAAGTGAATTCTGCAATGCTGTGAGAGAG___GTATATGAACATGTCTATGAGACTGTGGACATCAGTAGCAGTCCTGAAGTGAGA AVPEGLSAFTQALDISMNNITQLPEDAFKNFPFLEEl|yl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7147 RAB35::KDM2B ENSG00000111737.12::ENSG00000089094.20 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1242 FALSE NA RAB35 ENSG00000111737.12 protein_coding - - chr12:120095099-120117502:- chr12:120098811:- chr12:120532903-120555306:- chr12:120536615:- KDM2B ENSG00000089094.20 protein_coding - - chr12:121429096-121581023:- chr12:121430469:- chr12:121866899-122018928:- chr12:121868272:- chr12:120097108 chr12:121437718 NA NA chr12:120534912 chr12:121875521 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Ras_family(94%)| Arf(92%),Gtr1_RagA(100%),MMR_HSR1(100%),Ras(92%),Roc(100%)|zf-C3HC4_3(100%) 0 1 0 764 412 ENST00000229340.10 ENST00000611216.4 upstream downstream none GGCATCCAGTTGTTCGAGACCAGCGCCAAGGAGAATGTCAACGTGGAAGAG|ACTGCAATAAGGTCACTGATCAGTGCCTGTCCTTCTTCAAACGCTGTGGA...CTGTCATATTGACCTGAGGTACTGCAAGCAAGTCACCAAGGAAGGCTGTGAGCAGTTCATAGCCGAGATGTCTGTGAGTGTCCAGTTTGGGCAAGTAGAAG GIQLFETSAKENVNVEE|TAIRSLISACPSSNAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7148 CDK13::SUGCT ENSG00000065883.18::ENSG00000175600.16 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 710 FALSE NA FALSE NA CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:40078851:+ chr7:39989720-40139179:+ chr7:40118450:+ SUGCT ENSG00000175600.16 protein_coding + + chr7:40135005-40860763:+ chr7:40449287:+ chr7:40174604-40900362:+ chr7:40488886:+ chr7:40085386,chr7:40085382 chr7:40446091,chr7:40446084 NA NA chr7:40124985,chr7:40124981 chr7:40485690,chr7:40485683 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Protein_kinase_domain(100%)|CoA-transferase_family_III(38%) ABC1(100%),Haspin_kinase(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|CoA_transf_3(60%) 7 1 5 165 58 ENST00000181839.10 ENST00000335693.9 downstream upstream mismatches(1) GTGGGAGTCCATGTCCTGCAGTGTGGCCTGATGTAATCAAACTACCATATTTCAACACCATGAAACCAAAGAAGCAATATCGTCGAAAGTTAAGAGAAGAATTTGTTTT___TATTCCTGCAGCTGCGCTAGACTTATTTGATTACATGCTTGCCTTGGATCCTAGTAAGCGCTGCACTGCTGAACAGGCTCTTCAGTGCGAGTTCCTCCGAGATGTGGAACCCTCAAAAATGCCTCCACCAGA|GCTTTTAAAACCAAGGATGGCTATATTGTAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAG___ATCTTGGATTTGCCTGAGTTGATTGATAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAG GSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLALDPSKRCTAEQALQCEFLRDVEPSKMPPPe|llkprmail* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7177 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1248 FALSE NA RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59914703:+ chr17:57970407-58027935:+ chr17:57992064:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Protein_kinase_domain(14%)|SNARE_associated_Golgi_protein(58%) PK_Tyr_Ser-Thr(8%),Pkinase(8%)| 0 1 1 518 826 ENST00000225577.9 ENST00000262291.9 downstream upstream none CAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAG___GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG|GACTTTGCCTCCCGGGCCAAACT...ATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAG RGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKK|DFASRAK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE|FALSE,FALSE,TRUE|FALSE,TRUE|FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE,TRUE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7187 LIN52::PAPLN-AS1 ENSG00000205659.12::ENSG00000258376.2 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101234:+ chr14:74551659-74668196:+ chr14:74567937:+ PAPLN-AS1 ENSG00000258376.2 lncRNA - + chr14:73242651-73245979:- chr14:73244659:+ chr14:73709359-73712687:- chr14:73711367:+ chr14:74128092,chr14:74128093 chr14:73243764,chr14:73243762 NA NA chr14:74594795,chr14:74594796 chr14:73710472,chr14:73710470 NA NA sense antisense unknown CDS exon duplication/5'-5' low none Retinal_tissue_protein(85%)| LIN52(9%)| 0 0 5 200 21 ENST00000555028.7 unknown downstream upstream none TCTCCACCCAAATGGATGGCTGAGATAGAACGTGATGACATCGACATGTTGAAAG___AACTGGGGAGTCTCACCACGGCTAATTTGATGGAGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTGGGGCTGGAT...|...CGGCAGAGTGACACCTGGGGACCCTGGgGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAGGTAGGAGAGATGAAAATGGGCCAGCTTGTTAAAGCAGGAGCAGGGaATGCTGCCTTCTGGGTGGTGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7195 C11orf54::LNCRNA-IUR ENSG00000182919.15::ENSG00000245552.9 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1250 TRUE 485 C11orf54 ENSG00000182919.15 protein_coding + + chr11:93741591-93764749:+ chr11:93750444:+ chr11:93474757-93497915:+ chr11:93483610:+ LNCRNA-IUR ENSG00000245552.9 lncRNA + + chr11:95150539-95234391:+ chr11:95179460:+ chr11:94883703-94967555:+ chr11:94912624:+ chr11:93753514,chr11:93753513 chr11:95179028,chr11:95179024 NA NA chr11:93486680,chr11:93486679 chr11:94912192,chr11:94912188 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Domain_of_Unknown_Function_(DUF1907)(11%)| none 2 0 0 463 11 ENST00000528288.5 ENST00000702183.1 downstream upstream duplicates(2) GTGTTTTGCTACCGTGACCGTTTAG___AACAGAAACTGTTCATACTTGGTGCGCTGTGGACTCTTGTGATAATTAACCAAGAGTAGCTCTATTTGTCCAACCT...AAGAAAATGGCTTGTGCTGAGTTTTCTTTTCATGTACCAAGTCTTGAAGAGCTTGCTGGAG___TTATGCAGAAGGGGTTAAAAGATAACTTTGCTGATGTCCAGGTCTCTGTAGTTGATTGCCCTGATTTGACTAAGGAACCCTTTACCTTTCCTGTAAAAG|GGGATGAAGTGGGATGAGAGGAAGGAGAAGAGATGAAGGTGAAAGACCACTCTGA MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVK|gdevg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7196 C11orf54::LNCRNA-IUR ENSG00000182919.15::ENSG00000245552.9 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1250 TRUE 485 C11orf54 ENSG00000182919.15 protein_coding + + chr11:93741591-93764749:+ chr11:93747448:+ chr11:93474757-93497915:+ chr11:93480614:+ LNCRNA-IUR ENSG00000245552.9 lncRNA + + chr11:95150539-95234391:+ chr11:95179460:+ chr11:94883703-94967555:+ chr11:94912624:+ chr11:93753514,chr11:93753513 chr11:95179028,chr11:95179024 NA NA chr11:93486680,chr11:93486679 chr11:94912192,chr11:94912188 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none none none 1 0 0 447 11 ENST00000526335.1 ENST00000702183.1 downstream upstream none GTTTTAAATTTTAAATTACAATAAAATAAAGTGT?AGTATTAAAAGGCCACTTGTCTATTTCTCACTTGGAATATTAAATGCTGGAAGCTGTGTTTGCCTG...AATGGCTTGTGCTGAGTTTTCTTTTCATGTACCAAGTCTTGAAGAGCTTGCTGGAG|GGGATGAAGTGGGATGAGAGGAAGGAGAAGAGATGAAGGTGAAAG MACAEFSFHVPSLEELAG|gdevg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7207 NFAT5::CYB5B ENSG00000102908.23::ENSG00000103018.18 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69655799:+ chr16:69598997-69738569:+ chr16:69689702:+ CYB5B ENSG00000103018.18 protein_coding + + chr16:69398402-69466264:+ chr16:69447150:+ chr16:69432305-69500167:+ chr16:69481053:+ chr16:69657592 chr16:69434423 NA NA chr16:69691495 chr16:69468326 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Rel_homology_DNA-binding_domain(72%)|Cytochrome_b5-like_Heme/Steroid_binding_domain(58%) RHD_DNA_bind(38%)|Cyt-b5(34%) 0 2 0 97 2985 ENST00000349945.7 ENST00000307892.13 downstream upstream duplicates(1),mismatches(1) AGAACACAGCAAGGCTTTCCTACAGTAAAG___CTGGAAGGCCATAATGAACCTGTAGTGTTGCAAGTGTTTGTGGGCAACGACTCTGGACGAGTGAAACC...GAAATACAACTCCTTGCAAAGAAGTGGACATTGAAGGCACTACTGTTATAGAAGTCGGCCTTGATCCTAGCAACAACATGACACTGGC|CACCCTGGAGGAGAAGAGGTTCTGCTGGAACAAGCTGGTGTAGATGCAAGTGAAAGCTTTGAAGATGTAGGAaAgcCTT...CATTGGTGATATCCATCCG___AGTGACCTTAAACCTGAAAGTGGTAGCAAG___GACCCTTCAAAAAATGATACATGCAAAAG___TTGCTGGGCATATTGGATTTTAC...AGACGATTGGCCAGACATCACCTCAGATCTGAGACCAGCGTCTTCCATCTCTCAGAGCCTTACTCCCAAAGTACCTGCTCACTGTTCCGTGTTGAACAATT NTTPCKEVDIEGTTVIEVGLDPSNNMTLa|tleekrfcwnklv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7211 RNFT1-DT::VMP1 ENSG00000267302.5::ENSG00000062716.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNFT1-DT ENSG00000267302.5 lncRNA + + chr17:59964832-59996972:+ chr17:59966467:+ chr17:58042193-58074333:+ chr17:58043828:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59811670:+ chr17:57784553-57919616:+ chr17:57889031:+ chr17:59978986,chr17:59978984 chr17:59809152,chr17:59809131 NA NA chr17:58056347,chr17:58056345 chr17:57886513,chr17:57886492 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |SNARE_associated_Golgi_protein(32%) none 1 1 0 31 594 ENST00000586209.1 ENST00000262291.9 downstream upstream none CCGAGATGAGAGGAGAGAG___ATTTCTGGTTCAGTAAGGGTGAGAGCCAGGCTCCAGACTATAGTGAATTTTCCGAGGAGATATGT|ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGT...CTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7215 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 0 1 1 2 734 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(1) GGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTG...AAGGGTGTATTGACAACAGAGAAACAGAtCTTCCTACTTTTTGACATGACAACACATCCCCTCACCAATAACAACATTAAGCAGCGCCTCATCAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 7222 TMOD3::TMOD2 ENSG00000138594.14::ENSG00000128872.10 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1253 TRUE 486 TMOD3 ENSG00000138594.14 protein_coding + + chr15:51829628-51947295:+ chr15:51869373:+ chr15:52121825-52239492:+ chr15:52161570:+ TMOD2 ENSG00000128872.10 protein_coding + + chr15:51751597-51816363:+ chr15:51808420:+ chr15:52043794-52108560:+ chr15:52100617:+ chr15:51880325,chr15:51880318 chr15:51806764,chr15:51806754 NA NA chr15:52172522,chr15:52172515 chr15:52098961,chr15:52098951 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Tropomodulin(63%)| Tropomodulin(24%)| 141 72 145 1821 403 ENST00000308580.12 ENST00000249700.9 downstream upstream duplicates(106),low_entropy(1),mismappers(44),mismatches(8) ACCTTGATGAAGATGAGCTCCTTGGGAATCTGTCAGAAACAGAACTGAAACAACTGGAAACTGTTTTGGATGATCTTGACCCCGAG___AATGCCCTTCTGCCTGCAGGGTTCCGGCAGAAGAACCAGACATCAAAGTCCACCACAGGGCCATTTGATAGAGAGCATCTCCTTTCATATCTGGAGAAAGAAGCATTGGAGCATAAAGACAGGGAAGACTATGTGCCCTACACTGGAGAAAAAAAAG|TTCGTAAGAAGAGAGTTGAAGCAGACCGAAGGTAAACTTCCTTGAGGAGAAGTGAAGTTTCACTGTGGTATGGCCATTGAAAAACAAAAACTCTTCTTCTTCCCCATCAGGACCATTTTATCAAAGTTCGTTCATTTCCGTTAACCACATAACTAATAATTTAATTGTTATTCTTTTTTAGCACTACTTATTTATCTTGGATTTTGTAATATATGCAATTGTTTTATTTGCTCATGGGCACTTCTGGCAACTTGACAAATGG LDEDELLGNLSETELKQLETVLDDLDPENALLPAGFRQKNQTSKSTTGPFDREHLLSYLEKEALEHKDREDYVPYTGEKK|vRKKRVEADRR* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7223 TMOD3::TMOD2 ENSG00000138594.14::ENSG00000128872.10 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1253 TRUE 486 TMOD3 ENSG00000138594.14 protein_coding + + chr15:51829628-51947295:+ chr15:51863010:+ chr15:52121825-52239492:+ chr15:52155207:+ TMOD2 ENSG00000128872.10 protein_coding + + chr15:51751597-51816363:+ chr15:51808420:+ chr15:52043794-52108560:+ chr15:52100617:+ chr15:51880325,chr15:51880318 chr15:51806764,chr15:51806754 NA NA chr15:52172522,chr15:52172515 chr15:52098961,chr15:52098951 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Tropomodulin(26%)| Tropomodulin(0%)| 0 1 28 2001 403 ENST00000308580.12 ENST00000249700.9 downstream upstream duplicates(6),mismatches(3) GCGGCCGGCAGTTTCCGTGGGTCTGTGAAGAGGTCGGCGGCCCCTGCGGGCGCCAGTCAG___CTTTAAGAAAAAGTAGAGATCACTTCTGACTGTACTGAACAGCAAAAATTAAGTGACTTGCTGCCCTGCACATCATGGCACTGCCATTCCGTAAGGACTTAGAAAAGTACAAAGACCTTGATGAAGATGAGCTCCTTGGGAATCTGTCAGAAACAGAACTGAAACAACTGGAAACTGTTTTGGATGATCTTGACCCCGAG|TTCGTAAGAAGAGAGTTGAAGCAGACCGAAGGTAAACTTCCTTGAGGAGAAGTGAAGTTTCACTGTGGTATGGCCATTGAAAAACAAAAACTCTTCTTCTTCCCCATCAGGACCATTTTATCAAAGTTCGTTCATTTCCGTTAACCACATAACTAATAATTTAATTGTTATTCTTTTTTAGCACTACTTATTTATCTTGGATTTTGTAATATATGCAATTGTTTTATTTGCTCATGGGCACTTCTGGC MALPFRKDLEKYKDLDEDELLGNLSETELKQLETVLDDLDPE|fvrrelkqtegklp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7224 TMOD3::TMOD2 ENSG00000138594.14::ENSG00000128872.10 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1253 TRUE 486 TMOD3 ENSG00000138594.14 protein_coding + + chr15:51829628-51947295:+ chr15:51829836:+ chr15:52121825-52239492:+ chr15:52122033:+ TMOD2 ENSG00000128872.10 protein_coding + + chr15:51751597-51816363:+ chr15:51808420:+ chr15:52043794-52108560:+ chr15:52100617:+ chr15:51880325,chr15:51880318 chr15:51806764,chr15:51806754 NA NA chr15:52172522,chr15:52172515 chr15:52098961,chr15:52098951 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 0 0 2357 403 ENST00000308580.12 ENST00000249700.9 downstream upstream duplicates(1),mismatches(1) GGGCGGTCGAGTGAGGGAGCTGCTGGCGGGTGGGTCTGGCAACTCTTTGGGAGGCCGACGCGGGCGGACCGGCGGGgGggGGGgAaCcgGgCcCGGC...CTGTGAAGAGGTCGGCGGCCCCTGCGGGCGCCAGTCAG|TTCGTAAGAAGAGAGTTGAAGCAGACCGAAGGTAAACTTCCTTGAGGAGAAGTGAAGTTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7225 ITGB4::MYO15B ENSG00000132470.14::ENSG00000266714.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 711 FALSE NA FALSE NA ITGB4 ENSG00000132470.14 protein_coding + + chr17:75721328-75757818:+ chr17:75752577:+ chr17:73717408-73753899:+ chr17:73748658:+ MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75602517:+ chr17:73583881-73622929:+ chr17:73598598:+ chr17:75752993,chr17:75752990 chr17:75602256,chr17:75602250 NA NA chr17:73749074,chr17:73749071 chr17:73598337,chr17:73598331 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calx-beta_domain(100%),EGF-like_domain(100%),Fibronectin_type_III_domain(50%),Integrin_beta_chain_VWA_domain(99%),Integrin_beta_epidermal_growth_factor_like_domain_1(100%),Integrin_beta_tail_domain(100%),Integrin_plexin_domain(100%)|FERM_central_domain(100%),MyTH4_domain(100%),Myosin_head_(motor_domain)(24%),Variant_SH3_domain(100%) Calx-beta(100%),EGF_2(100%),I-EGF_1(100%),Integrin_B_tail(100%),Integrin_beta(83%),PSI_integrin(100%),fn3(55%)|FERM_M(100%),MyTH4(100%),Myosin_head(21%),SH3_2(100%),SH3_9(100%) 70 58 61 1730 135 ENST00000200181.8 ENST00000645453.3 downstream upstream duplicates(34),mismatches(5) TGCTGCTTATTGAGAACCTTCGGGAGTCCCAGCCCTACCGCTACACGGTGAAGGCGCGCAACGGGGCCGGCTGGGGGCCTGAGCGGGAGGCCATCATCAACCTGGCCACCCAGCCCAAGAGGCCCATGTCCA___TCCCCATCATCCCTGACATCCCTATCGTGGACGCCCAGAGCGGGGAGGACTACGACAGCTTCCTTATGTACAGCGATGACGTTCTACGCTCTCCATCGGGCAGCCAGAGGCCCAGCGTCTCCGATGACACTG|GTTCACAAGTTTTTAAACAGAAACCGGGATCAGCTGGACCCTGCTGTGGTGGAGATGCTTGGCCAGAGCCAGCTCCAG___CTGGTGGGCAGCCTGTTCCAGGAGGCAGAGCCCCAGTCCAGGGGAGGGCGAGGCAGACCCACGCTGGCCTCTCGCTTCCAGCAGGCCCTGGAGGACCTCATAGCCCG LLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVLRSPSGSQRPSVSDDT|gsqvfkqkpgsagpccggdawpepapaggqpvpggrapvqgrarqthaglslpagpggphs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 73717692|73717692|73717692 FALSE|FALSE|FALSE 73620450|73620623|73620255 FALSE|FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7226 CNOT2::CPM ENSG00000111596.14::ENSG00000135678.12 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT2 ENSG00000111596.14 protein_coding + + chr12:70243002-70354993:+ chr12:70338822:+ chr12:70636782-70748773:+ chr12:70732602:+ CPM ENSG00000135678.12 protein_coding - + chr12:68842197-68971570:- chr12:68862026:+ chr12:69235977-69365350:- chr12:69255806:+ chr12:70342062,chr12:70342063 chr12:68859398,chr12:68859396 NA NA chr12:70735842,chr12:70735843 chr12:69253178,chr12:69253176 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 34 28 54 719 123 ENST00000418359.7 unknown downstream upstream duplicates(18),low_entropy(3),mismatches(4) CCAAATTCCCTGGAGATAAAAGTTCAACAACACAAAATAATAACCAGCAGAAAAAAGGGATCCAGGTGTTACCTGATG___GTCGGGTTACTAACATTCCTCAAGGGATGGTGACGGACCAATTTGGAATGATTGGCCTGTTAACATTTATCAGGGCAGCAGAGACAGACCCAGGAATGGTACATCTTGCATTAGGAAGTGACTTAACAACATTAGGCCTCAATCTGAACTCTCCTGA|TCACATGACAGTGATTTTGGATGGCCTCAGGGACTTGAACAACACCTACGTATCAGTGTGTGCTGCAGCTGAATCAAGGCTCCAGTCAACCTGCGGTCTGCCTACCCTCAAAGATAGAAAAAGGAAGAACAATTTGCATTTGAAGAAgTGTCTGAAAATCTTCATATTCCAGTTTGACCCTCATTCGTCATCCCCTAATAACCCAAAGATTCACTTTCTTTTTTTTTAAATTGAAGTCTCCCTCTGTTGCCCAGGCTG KFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPd|hmtvildglrdlnntyvsvcaaaesrlqstcglptlkdrkrknnlhlkkclkififqfdphssspnnpkihflff* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7227 ZNF8-DT::ENSG00000267299 ENSG00000268516.4::ENSG00000267299.1 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 712 FALSE NA FALSE NA ZNF8-DT ENSG00000268516.4 lncRNA - - chr19:58257270-58278830:- chr19:58278523:- chr19:58768636-58790196:- chr19:58789889:- ENSG00000267299 ENSG00000267299.1 lncRNA + + chr19:6109322-6125797:+ chr19:6125534:+ chr19:6109333-6125808:+ chr19:6125545:+ chr19:58263857 chr19:6113205 NA NA chr19:58775223 chr19:6113216 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 12 30 35 160 109 ENST00000597230.4 ENST00000588342.1 upstream upstream duplicates(20),mismatches(7) GGCGGACCCCGAGAGATGACTGATTGTGGGGGTGGGGACCGTCTGCTCCTCCTAATGGCTGGGGACCGTGCACGTCTGCGCGGGCCGGACCTGCTCTTCTCGGGAACTTGCGCGGGAGGAGGCCCGGAGCTGCGCCGCTTTACCCTCTGCTCCCCGGTGCCTAAAACGCACACGCATCAAAGTCACAGGACGAGTTAGAG|GCACTTCAAATGATAATGATGCTCTAATTTGCATGCATTGTTGGAGGAGTCATCCAGTTGCTGGCTTGATCCCTGCTAAAAGAGCATACCAGCTGCAAATTGACAGAAGAATCTGATACACGTGAAGATGGGGACTTGGAGGCTTTATCTGGAGCTGCcGCTACCAGGAGCCCCCTTCTGGTCTcCTCCAAGAACTGCACCTTGGCTTCATGGCCTTACCTTGGCACCTGGAACATGGACTCCTTCAGTATCTTCCAGTACCTGGATCCACAGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7228 ZNRD2-DT::ERP44 ENSG00000260233.4::ENSG00000023318.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 713 FALSE NA FALSE NA ZNRD2-DT ENSG00000260233.4 lncRNA - - chr11:65568482-65570458:- chr11:65569696:- chr11:65335953-65337929:- chr11:65337167:- ERP44 ENSG00000023318.9 protein_coding - - chr9:99979185-100099052:- chr9:100060172:- chr9:102741467-102861334:- chr9:102822454:- chr11:65568493,chr11:65568496 chr9:100083058,chr9:100083058 NA NA chr11:65335964,chr11:65335967 chr9:102845340,chr9:102845340 NA NA sense sense unknown exon CDS/splice-site translocation high none |Thioredoxin(100%),Thioredoxin-like_domain(100%) |Calsequestrin(100%),HyaE(100%),Thioredoxin(100%),Thioredoxin_6(100%) 8 25 16 86 664 ENST00000623234.2 ENST00000262455.7 upstream downstream duplicates(4) CCAGGAGGGGTGCATTCTCCCTTTCCGCGTATTTCAAGACCACTCCCCTTCTGCATGCTCGGTGTCCCAGTCTGTCTCCTCGCTGCCTCCCGAGGCCTGGAACTGAAGCAAAGTTCGCCCCGAAGCCGACCGTTCTTTGAAGTTGAAATCCTCAAAAAGCCTGCAGACTGAATAGCGCTGTACTGGGCACGCGCATTGCGCTTCCAGCCGCCCTTGGGTGCTGCGTGCTGGGCCGGGTCGGGTTGGGGCCTTCCTACATACTCTTGCGACCATTAGGCTCTTCTTGG|GTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAA___ACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTG___GTGTCGTTTCAGTCAGATGTTGCATCCAATTTTTGAGGAAGCTTCCGATGTCATTAAGGAAGAATTTCCAAATGAAAATCAAGTAGTGTTTGCCAGAGTTGATTGTGATCAGCACT___CTGACATAGCCCAGAGATACAGGATAAGCAAATACCCAACCCTCAAATTGTTTCGTAATGGGATGATGATGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7229 CCNF::ABCA17P ENSG00000162063.13::ENSG00000238098.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1254 TRUE 487 CCNF ENSG00000162063.13 protein_coding + + chr16:2429394-2458854:+ chr16:2443800:+ chr16:2479395-2508855:+ chr16:2493801:+ ABCA17P ENSG00000238098.9 transcribed_unitary_pseudogene + + chr16:2339150-2426699:+ chr16:2381226:+ chr16:2389151-2476700:+ chr16:2431227:+ chr16:2444600,chr16:2444601 chr16:2380877,chr16:2380872 NA NA chr16:2494601,chr16:2494602 chr16:2430878,chr16:2430873 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Cyclin__N-terminal_domain(19%),F-box_domain(100%)| Cyclin_N(1%),F-box(100%),F-box-like(100%)| 4 12 26 122 71 ENST00000397066.9 unknown downstream upstream duplicates(9),mismappers(4),mismatches(6),multimappers(1) GTCAGATCCTGGGCGATGCCTCCACAGCTTCCGAAAACTCAGGGACTACGCTGCCAAAGGCTGCTGGGAAGCGCAG___CTGTCTTTAGCCAAAGCCTGTGCAAATGCAAACCAGCTTGGACTGGAGGTGAGAGCTTCCAGTGAGATCGTCTGCCAGCTATTTCAGGCTTCCCAGGCTGTCAGTAAACAACAAGTCTTCTCCGTGCAGAAGGGACTCAATGACACAATGAG|AGTCTCACTCTGTcGCCCAGGCTGGAATGCAGTAGCACCATCTCAGCTCGCTGCAGCCcCCACCTCCTGGGTTCAAGCGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGGATTACGTGCACCTGCAACCATGCCTAGCTAATTTGTGTGTGTGTGTGCTTTTTTTTTTTGAGACGGAGTCGCACTCTGTCACCCAGGC SDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMr|vslcrpgwnavapsqlaaaptswvqailvpqppk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7230 CCNF::ABCA17P ENSG00000162063.13::ENSG00000238098.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1254 TRUE 487 CCNF ENSG00000162063.13 protein_coding + + chr16:2429394-2458854:+ chr16:2443800:+ chr16:2479395-2508855:+ chr16:2493801:+ ABCA17P ENSG00000238098.9 transcribed_unitary_pseudogene + + chr16:2339150-2426699:+ chr16:2386104:+ chr16:2389151-2476700:+ chr16:2436105:+ chr16:2444600,chr16:2444601 chr16:2380877,chr16:2380872 NA NA chr16:2494601,chr16:2494602 chr16:2430878,chr16:2430873 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Cyclin__N-terminal_domain(19%),F-box_domain(100%)| Cyclin_N(1%),F-box(100%),F-box-like(100%)| 8 5 10 122 26 ENST00000397066.9 ENST00000469908.5 downstream upstream duplicates(4) GCACTGCTTGGGCAGAGTGCTGAGTCTGTTCGAG___...CAGGCCCATGACCTGTTTGAGGAGGCTGCTCATCAGGGATGTCTGACCAGCTCCTACCTCCTCTGGGAAAGCGACAGGAGGACAGAT___GTGTCAGATCCTGGGCGATGCCTCCACAGCTTCCGAAAACTCAGGGACTACGCTGCCAAAGGCTGCTGGGAAGCGCAG___CTGTCTTTAGCCAAAGCCTGTGCAAATGCAAACCAGCTTGGACTGGAGGTGAGAGCTTCCAGTGAGATCGTCTGCCAGCTATTTCAGGCTTCCCAGGCTGTCAGTAAACAACAAGTCTTCTCCGTGCAGAAGGGACTCAATGACACAATGAG|CTGAAGGGCCTGTCACGTCAGAAGTGCCCTGAAGTCAAGCAGGTGCTGCACATCATAGGCCTGGAGGACAAGTGGAACTCACGGAGCCGCTTCCTGAGCGGGGGCATGAGCCGCAAGCTCTCCATCGGCATCGCCCTCATCGCAGGCTCCAAGGTGCGGCGGTGGGACTGGAGGCAGTGGGTTCCCCTCCTGCTCGACCTGGGACTACAG QAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLEVRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMs|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7231 CCNF::ABCA17P ENSG00000162063.13::ENSG00000238098.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1254 TRUE 487 CCNF ENSG00000162063.13 protein_coding + + chr16:2429394-2458854:+ chr16:2443800:+ chr16:2479395-2508855:+ chr16:2493801:+ ABCA17P ENSG00000238098.9 transcribed_unitary_pseudogene + + chr16:2339150-2426699:+ chr16:2395840:+ chr16:2389151-2476700:+ chr16:2445841:+ chr16:2444600,chr16:2444601 chr16:2380877,chr16:2380872 NA NA chr16:2494601,chr16:2494602 chr16:2430878,chr16:2430873 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Cyclin__N-terminal_domain(19%),F-box_domain(100%)| Cyclin_N(1%),F-box(100%),F-box-like(100%)| 1 0 0 122 2 ENST00000397066.9 ENST00000469908.5 downstream upstream none CAGGCTGTCAGTAAACAACAAGTCTTCTCCGTGCAGAAGGGACTCAATGACACAATGAG|GTTTGAATCTCTATTTACTGACTTGGAACTGAGGCAGGTAGAGCTGG QAVSKQQVFSVQKGLNDTMr|feslftdlelrqvel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7232 CNPY2::SMARCC2 ENSG00000257727.6::ENSG00000139613.12 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 714 TRUE 1255 TRUE 488 CNPY2 ENSG00000257727.6 protein_coding - - chr12:56309842-56316119:- chr12:56310310:- chr12:56703626-56709903:- chr12:56704094:- SMARCC2 ENSG00000139613.12 protein_coding - - chr12:56162359-56189567:- chr12:56184244:- chr12:56556143-56583351:- chr12:56578028:- chr12:56310266,chr12:56310270 chr12:56184452,chr12:56184453 NA NA chr12:56704050,chr12:56704054 chr12:56578236,chr12:56578237 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion/read-through high none TLR4_regulator_and_MIR-interacting_MSAP(100%)|Myb-like_DNA-binding_domain(100%),SWIRM-associated_domain_at_the_C-terminal(100%),SWIRM-associated_domain_at_the_N-terminal(61%),SWIRM-associated_region_1(100%),SWIRM_domain(100%) DUF3456(32%)|Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),SWIRM(100%),SWIRM-assoc_1(100%),SWIRM-assoc_2(52%),SWIRM-assoc_3(100%) 7 13 6 48 141 ENST00000546466.5 ENST00000550164.6 upstream downstream duplicates(7) TAAAGACAAACTTTGCAGTAAGCGAACAG___ATCTTTGTGACCATGCCCTGCACATATCGCATGATGAGCTATGAACCACTGGAGCAGCCCACACTGGCTTGATGGATCACCCCCAGGAGGGGAAAATG___...CAAAAGTACAAACTGTGTTGTCTTTTCATGCCTGGAATTGCCCTTACATTAAGCTTGAAGATAAGGAGTTAcATAGACAGGAAAGATAATGGAGGAGAAAGAAGAGTTTTGGGATTGATACAGGATAAAG|GGAACAGTCACTGAGGATAAGAACAATGCCTCCCATGTTGTGTATCCTGTCCCGGGGAATCTAGAAGAAG___AGGAATGGGTACGACCAGTCATGAAGAGGGATAAGCAGGTTCTTCTGCACTGGGGCTACTATCCTGACAG___TTACGACACGTGGATCCCAGCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7233 CNPY2::SMARCC2 ENSG00000257727.6::ENSG00000139613.12 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1255 TRUE 488 CNPY2 ENSG00000257727.6 protein_coding - - chr12:56309842-56316119:- chr12:56310958:- chr12:56703626-56709903:- chr12:56704742:- SMARCC2 ENSG00000139613.12 protein_coding - - chr12:56162359-56189567:- chr12:56184244:- chr12:56556143-56583351:- chr12:56578028:- chr12:56310266,chr12:56310270 chr12:56184452,chr12:56184453 NA NA chr12:56704050,chr12:56704054 chr12:56578236,chr12:56578237 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none TLR4_regulator_and_MIR-interacting_MSAP(98%)|Myb-like_DNA-binding_domain(100%),SWIRM-associated_domain_at_the_C-terminal(100%),SWIRM-associated_domain_at_the_N-terminal(61%),SWIRM-associated_region_1(100%),SWIRM_domain(100%) DUF3456(28%)|Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),SWIRM(100%),SWIRM-assoc_1(100%),SWIRM-assoc_2(52%),SWIRM-assoc_3(100%) 0 3 1 430 141 ENST00000273308.9 ENST00000550164.6 upstream downstream none CTACAAGGCATCCGAATCGACTCAGATATTAGCGGCACCCTCAAGTTTGCG___TGTGAGAGCATTGTGGAGGAATACGAGGATGAACTCATTGAATTCTTTTCCCGAGAGGCTGACAATGTTAAAGACAAACTTTGCAGTAAGCGAACAG|GGAACAGTCACTGAGGATAAGAACAATGCCTCCCATGTTGTGTATCCTGTCCCGGGGAATCTAGAAGAAG___AGGAATGGGTACGACCAGTCATGAAGAGGGATAAGCAGGTTCTTCTGCACTGGGGCTACTATCCTGACAG___TTACGACACGTGGATCCCAG LQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRT|gnsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7237 SULF2::DLGAP4 ENSG00000196562.16::ENSG00000080845.19 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47702519:- chr20:46284941-46415360:- chr20:46331263:- DLGAP4 ENSG00000080845.19 protein_coding + - chr20:36306336-36528637:+ chr20:36478049:- chr20:34894258-35157040:+ chr20:35106452:- chr20:47699501,chr20:47699504 chr20:36489609,chr20:36489609 NA NA chr20:46328245,chr20:46328248 chr20:35118012,chr20:35118012 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Sulfatase(44%)| Sulfatase(69%)| 2 6 6 151 18 ENST00000359930.8 unknown upstream downstream duplicates(1) CCGGCTGGAAGGAGTGGGTCGGACTCCTTAAAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAG|GCCCATCAACACTGGAGCTTCTTGAGAAATGTTTCAAATCCAGTAAGACGGAAAAGCAAACATCTATTTCAAGTCTACTGTCCTTCGAAAGACTGACCAACAAGAAACCTTAAAAAGCTGCAACTTGTGGAGGGTAGCTGGGTTTCAGCCCAATTTTACCAGTGAAGTGCCGTATGACCTTGGGCAAGTCCCTGTATTTCTGGGTCTCCACTACTTCTACAAATTGGGATCAGGCG GWKEWVGLLKNSRFYNYTLCRNGVKEKHGSDYSK|ahqhwsflrnvsnpvrrkskhlfqvycpskd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7245 SYNJ1::CSTL1 ENSG00000159082.18::ENSG00000125823.13 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SYNJ1 ENSG00000159082.18 protein_coding - - chr21:32628759-32728040:- chr21:32673340:- chr21:34001069-34100351:- chr21:34045650:- CSTL1 ENSG00000125823.13 protein_coding + - chr20:23426104-23444930:+ chr20:23432509:- chr20:23406741-23425567:+ chr20:23413146:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Endonuclease/Exonuclease/phosphatase_family(11%),SacI_homology_domain(100%)| Exo_endo_phos(0%),Syja_N(100%)| 2 0 2 195 81 ENST00000382491.7 unknown upstream downstream duplicates(1) CTCGAGCACTTTTAACTACTGGAAGTTTGCGTG___CATCTTCTAAAGTACTAAAGAGCATGTGTGAGAATTTCTACAAATATTCAAAGCCTAAGAAAATTCGAGTATGTGTCGGAACCTGGAATGTGAATGGTGGGAAGCAATTTCGCAGCATAGCTTTTAAGAATCAGACACTCACTGACTGGCTTCTTGATGCACCCAAGTTAGCTGGCATCCAGGAGTTTCAAG|ACTTTTACATCAACTAATAAAAAG...TCAGGAGTTTGAGACCAGCCTGGGCAAGAGAGCAAGACCTCATCTCTACTAAAAATAAAAATTAAAAAACAACTGGGTTTGGTGGTACATGCCTGTAGTCCC RALLTTGSLRASSKVLKSMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQ|dfyin* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7246 H6PD::ENSG00000286871 ENSG00000049239.13::ENSG00000286871.1 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA H6PD ENSG00000049239.13 protein_coding + + chr1:9234774-9271337:+ chr1:9247083:+ chr1:9294833-9331396:+ chr1:9307142:+ ENSG00000286871 ENSG00000286871.1 lncRNA + + chr6:88378280-88385447:+ chr6:88384543:+ chr6:89087999-89095166:+ chr6:89094262:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Glucose-6-phosphate_dehydrogenase__C-terminal_domain(11%),Glucose-6-phosphate_dehydrogenase__NAD_binding_domain(100%)| G6PD_C(0%),G6PD_N(100%)| 2 1 1 516 1 ENST00000377403.7 ENST00000656004.1 downstream upstream duplicates(2) GTGGACCATTACTTAGGCAAGCAG___GCTGTGGCGCAGATCCTGCCTTTCCGAGACCAGAACCGCAAGGCTTTGGACGGCCTCTGGAACCGGCACCATGTGGAGCGGGTGGAGATCATCATGAAAGAGACCGTGGATGCTGAAG|AACTGTTTAGGACATTGTTGAATTTTAACATCTCCAGATGCTGGCACTAAACGCTGGAGCACCTTC...AATGCAACAACTGGAAATGGCCCCCTATGGTTCTCAGTGTCCCCTGGAGGGGTAGTATCATCTTCCATACGCCGTGTGAATCACTATGACTAGTGTGTGGA...ACACTATGTCATCCTGCCTGCCTGTCCTGCTCTTCTCAGAACCCCAATCTTCTTAGATGAATGCTCAGAAGCTCTGTCTCCTGTAGCCACCTTCAGCCCAC VDHYLGKQAVAQILPFRDQNRKALDGLWNRHHVERVEIIMKETVDAE|elfrtllnfnisrcwh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7253 RERE::RPL22 ENSG00000142599.20::ENSG00000116251.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 718 TRUE 1258 TRUE 489 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- RPL22 ENSG00000116251.11 protein_coding - - chr1:6185020-6209389:- chr1:6197756:- chr1:6245080-6269449:- chr1:6257816:- chr1:8731201,chr1:8731203 chr1:6198373,chr1:6198372 NA NA chr1:8791260,chr1:8791262 chr1:6258433,chr1:6258432 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Ribosomal_L22e_protein_family(100%) |Ribosomal_L22e(100%) 16 23 28 117 11216 ENST00000400908.7 ENST00000234875.9 upstream downstream duplicates(22),mismatches(7) CGCCTCCCCGCGGGCCGCCCCTCTCGGCCCTGCGCCCCGCGGCCCCGCAGCCTCCGCGCGGCCTCCCGCCCCATCCCCGCCACTTTCCCCGGAGCTGGGCCGCGAACACCTCACTATTGATGGTGTAGCGCTTTAGGGGAAG|AAAAAGCTTGTGGTGAAGGGGGGCAAAAAAAAGAAGCAAGTTCTGAAGTTCACTCTTGATTGCACCCACCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTT___GAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCTGGGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ribosomal protein L22 (EAP) 1 AML, CML leukaemia_lymphoma TSG, fusion translocation 7254 RERE::RPL22 ENSG00000142599.20::ENSG00000116251.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 719 TRUE 1258 TRUE 489 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8792404:- chr1:8412457-8908980:- chr1:8852463:- RPL22 ENSG00000116251.11 protein_coding - - chr1:6185020-6209389:- chr1:6197756:- chr1:6245080-6269449:- chr1:6257816:- chr1:8731201,chr1:8731203 chr1:6198373,chr1:6198372 NA NA chr1:8791260,chr1:8791262 chr1:6258433,chr1:6258432 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Ribosomal_L22e_protein_family(100%) |Ribosomal_L22e(100%) 1 2 32 13 11216 ENST00000337907.7 ENST00000234875.9 upstream downstream duplicates(15),mismappers(1),mismatches(2) CCACTTTCCCCGGAGCTGGGCCGCGAACACCTCACTATTGATGGgGTAGCGCTTTAGGGGAAG___GAGGTGATTGTCTAGGAGTAACTGTATGTGCGCTCAGCACCGGGTCACAACCACCGTGGGATCCACTTACAGAGAAGATTTGTGGAGAGCTTCAGCCTGTTTATGGTGTTACTGAGAAAGGAATTGTGGCCATTTGATATAATTCTGGATGGAAGACCTCTTATTTGTATTACATTGAATTAGAG|AAAAAGCTTGTGGTGAAGGGGGGCAAAAAAAAGAAGCAAGTTCTGAAGTTCACTCTTGATTGCACCCACCCTGTAGAAGATGGAATCATGGATGCTGCCAATTTT___GAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCTGGGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAAGATCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ribosomal protein L22 (EAP) 1 AML, CML leukaemia_lymphoma TSG, fusion translocation 7255 RERE::RPL22 ENSG00000142599.20::ENSG00000116251.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1258 TRUE 489 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- RPL22 ENSG00000116251.11 protein_coding - - chr1:6185020-6209389:- chr1:6193054:- chr1:6245080-6269449:- chr1:6253114:- chr1:8731201,chr1:8731203 chr1:6198373,chr1:6198372 NA NA chr1:8791260,chr1:8791262 chr1:6258433,chr1:6258432 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Ribosomal_L22e_protein_family(77%) |Ribosomal_L22e(71%) 0 1 11 117 13117 ENST00000400908.7 ENST00000471204.5 upstream downstream duplicates(3),mismatches(1) CCGCGGGCCGCCCCTCTCGGCCCTGCGCCCCGCGGCCCCGCAGCCTCCGCGCGGCCTCCCGCCCCATCCCCGCCACTTTCCCCGGAGCTGGGCCGCGAACACCTCACTATTGATGGTGTAGCGCTTTAGGGGAAG|GAGCAGTTTTTGCAAGAAAGGATCAAAGTGAACGGAAAAGCTGGGAACCTTGGTGGAGGGGTGGTGACCATCGAAAGGAGCAAGAGCAAGATCACCGTGACATCCGAGGTGCCTTTCTCCAAAAG___GTATTTGAAATATCTCACCAAAAAATATTTGAAGAAGAATAATCTACGTGACTGGTTGCGCGTAGTTGCTAACAGCAAAGAGAGTTACGAATTACGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ribosomal protein L22 (EAP) 1 AML, CML leukaemia_lymphoma TSG, fusion translocation 7276 ZNF8-DT::RFX2 ENSG00000268516.4::ENSG00000087903.13 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF8-DT ENSG00000268516.4 lncRNA - - chr19:58257270-58278830:- chr19:58278596:- chr19:58768636-58790196:- chr19:58789962:- RFX2 ENSG00000087903.13 protein_coding - + chr19:5993164-6199572:- chr19:6125803:+ chr19:5993175-6199583:- chr19:6125814:+ chr19:58263857 chr19:6113205 NA NA chr19:58775223 chr19:6113216 NA NA sense antisense unknown exon intron inversion/5'-5' low none none none 0 0 3 165 69 ENST00000597230.4 unknown upstream upstream mismatches(1) CAAGGGCGGACCCCGAGAGATGACTGATTGTGGGGGTGGGGACCGTCTGCTCCTCCTAATGGCTGGGGACCGTGCACGTCTGCGCGGGCCGGACCTGCTCTTCTCGGGAACTTGgcCGGGAGGgGGCCCGG...|...ACAGTGACACAGGATGTTCGTGGTGGACAGCtAGTGTCAGACGTAGGGATCAAAGACACACCTCCAGACCTCACTCCATACTGGCCACCCCGACAGGAGCCTTGGATGAGGCTGCTCATGGCTGTAGATGACACACCAAGGAACTAGAGCTTTTCAGATGCCACCTGGCCACTCCTGTTCTCGGCCATAGCAGTGTTACTTGGTACTGTCAATGTCCACTGCATTCTGTCAAATGTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7285 PTGIS::SLC9A8 ENSG00000124212.6::ENSG00000197818.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTGIS ENSG00000124212.6 protein_coding - - chr20:49503874-49568137:- chr20:49513080:- chr20:48120411-48184674:- chr20:48129617:- SLC9A8 ENSG00000197818.12 protein_coding + - chr20:49812713-49892242:+ chr20:49888037:- chr20:48429250-48508779:+ chr20:48504574:- chr20:49512212,chr20:49512215 chr20:49888333,chr20:49888333 NA NA chr20:48128749,chr20:48128752 chr20:48504870,chr20:48504870 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR duplication/5'-5' high none Cytochrome_P450(80%)| p450(87%)| 82 162 140 4543 596 ENST00000244043.5 unknown upstream downstream duplicates(27),low_entropy(5),mismatches(21),small_insert_size(1) TCCCACAGAAGGTTCTAGACAGCACACCTGTGCTTG___ATAGCGTGCTGAGTGAGAGCCTCAGGCTTACAGCTGCCCCCTTCATCACCCGCGAGGTTGTGGTGGACCTGGCCATGCCCATGGCAGACGGGCGAGAATTCAACCTGCGACGTGGTGACCGCCTCCTCCTCTTCCCCTTCCTGAGCCCCCAGAGAGACCCAGAAATCTACACAGACCCAGAG|GGGCTGCTGGATGCACGCATCTCTGCGAGGCCCCTGCTGAGTGTCTGTGCGCAGCAAACGCCCATCCTGGGCCTGCCTGCCTGAAGCCTTGGCACCTGGCGTCAGAGCAGCTCCTGCTCGTCGTCCTCGGAGCCGGAGGGGCCCTGGCGTACCTCCTCGTACCACTTGTTGGTGAGAGTTTTCATCTGGATGCGCCCGTGGTGCAGGTCCTGGGTCGAGAGACACAACCAAGCCGTCAGGGCGTCAGGGGCAGG PQKVLDSTPVLDSVLSESLRLTAAPFITREVVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPE|glldarisarpllsvcaqqtpilglpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7289 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 722 TRUE 1262 TRUE 490 LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75444582,chr10:75444582,chr10:75444583 chr10:74417999,chr10:74418003,chr10:74417997 NA NA chr10:77204340,chr10:77204340,chr10:77204341 chr10:76177757,chr10:76177761,chr10:76177755 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Leucine-rich_repeat(15%)|pfkB_family_carbohydrate_kinase(53%) LRR_9(0%)|PfkB(36%) 17 24 34 107 233 ENST00000611255.5 ENST00000539909.6 downstream upstream duplicates(2),mismatches(2) CCGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACA___GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAG MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|afflqfpqsqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7290 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 723 TRUE 1262 TRUE 490 LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75444582,chr10:75444582,chr10:75444583 chr10:74417999,chr10:74418003,chr10:74417997 NA NA chr10:77204340,chr10:77204340,chr10:77204341 chr10:76177757,chr10:76177761,chr10:76177755 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Leucine-rich_repeat(15%)|pfkB_family_carbohydrate_kinase(36%) LRR_9(0%)|PfkB(23%) 8 11 14 107 341 ENST00000611255.5 ENST00000539909.6 downstream upstream duplicates(2) CCTGCCGCGCTCCCCGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAG...___AAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAG MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|klpllleskalrlktlkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7291 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1262 TRUE 490 LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74670183:+ chr10:75910960-76469721:+ chr10:76429941:+ chr10:75444582,chr10:75444582,chr10:75444583 chr10:74417999,chr10:74418003,chr10:74417997 NA NA chr10:77204340,chr10:77204340,chr10:77204341 chr10:76177757,chr10:76177761,chr10:76177755 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Leucine-rich_repeat(15%)|pfkB_family_carbohydrate_kinase(20%) LRR_9(0%)|PfkB(7%) 1 0 3 107 613 ENST00000611255.5 ENST00000673352.1 downstream upstream duplicates(1) CCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|AAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAG___GTTTTCTGTCTCAAC MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7292 PARVA::USP47 ENSG00000197702.14::ENSG00000170242.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 724 TRUE 1263 TRUE 491 PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12377783:+ chr11:12399110-12556903:+ chr11:12399330:+ USP47 ENSG00000170242.19 protein_coding + + chr11:11841423-11961887:+ chr11:11942335:+ chr11:11862970-11983434:+ chr11:11963882:+ chr11:12427350,chr11:12427347 chr11:11940781,chr11:11940775 NA NA chr11:12448897,chr11:12448894 chr11:11962328,chr11:11962322 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |USP47_C(100%) 23 26 17 677 235 ENST00000334956.15 ENST00000527733.7 downstream upstream duplicates(1),low_entropy(1),mismappers(1),mismatches(6) CGTCCGCCCAGCGCCAGCTCCGCGTCCCGACCGGCCCGCGGCAGCCTGCGCCGCGCCATGGCCACCTCCCCGCAGAAGTCGCCTTCTGTCCCCAAGTCTCCCACTCCCAAGTCGCCCCCGTCCCGCAAGAAAGATGATTCCTTCTTGGGGAAACTCGGAGGGACCCTGGCCCGGAGGAAGAAAGCCAAGGAGG|GTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGGCCTTTGCAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCTGAACAATCCCCAGTATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGATGACTGTGAAAGAGTCAAAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAA MATSPQKSPSVPKSPTPKSPPSRKKDDSFLGKLGGTLARRKKAKE|gvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 12399330|12399330 TRUE|TRUE 11970025|11974288 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7293 PARVA::USP47 ENSG00000197702.14::ENSG00000170242.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1263 TRUE 491 PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12377783:+ chr11:12399110-12556903:+ chr11:12399330:+ USP47 ENSG00000170242.19 protein_coding + + chr11:11841423-11961887:+ chr11:11947945:+ chr11:11862970-11983434:+ chr11:11969492:+ chr11:12427350,chr11:12427347 chr11:11940781,chr11:11940775 NA NA chr11:12448897,chr11:12448894 chr11:11962328,chr11:11962322 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none |USP47_C(100%) 2 2 2 677 344 ENST00000334956.15 ENST00000527733.7 downstream upstream none CCGGCCCGCGGCAGCCTGCGCCGCGCCATGGCCACCTCCCCGCAGAAGTCGCCTTCTGTCCCCAAGTCTCCCACTCCCAAGTCGCCCCCGTCCCGCAAGAAAGATGATTCCTTCTTGGGGAAACTCGGAGGGACCCTGGCCCGGAGGAAGAAAGCCAAGGAGG|GGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGGTCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCTGATGACAATAAG___ATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACCAGCTTTTGGTCAATGAACAAGAG MATSPQKSPSVPKSPTPKSPPSRKKDDSFLGKLGGTLARRKKAKE|gLMVHVDKRITLAAFKQHLEPFVGVLSSHFKVFRVYASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 12399330|12399330 TRUE|TRUE 11970025|11974288 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7294 PARVA::USP47 ENSG00000197702.14::ENSG00000170242.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1263 TRUE 491 PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12377783:+ chr11:12399110-12556903:+ chr11:12399330:+ USP47 ENSG00000170242.19 protein_coding + + chr11:11841423-11961887:+ chr11:11952741:+ chr11:11862970-11983434:+ chr11:11974288:+ chr11:12427350,chr11:12427347 chr11:11940781,chr11:11940775 NA NA chr11:12448897,chr11:12448894 chr11:11962328,chr11:11962322 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none |USP47_C(44%) 1 0 0 677 483 ENST00000334956.15 ENST00000527733.7 downstream upstream none CCGCTGCGTCCGCCCAGCGCCAGCTCCGCGTCCCGACCGGCCCGCGGCAGCCTGCGCCGCGCCATGGCCACCTCCCCGCcGAAGTCGCCTTCTGTCCCCAA...GGAAACTCGGAGGGACCCTGGCCCGGAGGAAGAAAGCCAAGGAGG|GGGTAGAGAAGATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAGACGGTGGAAG KLGGTLARRKKAKE|gVEKMKSMSQLAVLSRRW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 12399330|12399330 TRUE|TRUE 11970025|11974288 FALSE|TRUE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7299 AGO3::FLYWCH1 ENSG00000126070.20::ENSG00000059122.17 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:35931445:+ chr1:36396319-36538101:+ chr1:36397046:+ FLYWCH1 ENSG00000059122.17 protein_coding + + chr16:2911931-2951208:+ chr16:2929613:+ chr16:2961932-3001209:+ chr16:2979614:+ chr1:35936322,chr1:35936320 chr16:2921048,chr16:2921046 NA NA chr1:36401923,chr1:36401921 chr16:2971049,chr16:2971047 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |FLYWCH-type_zinc_finger-containing_protein(100%),FLYWCH-type_zinc_finger-containing_protein_1(100%),FLYWCH_zinc_finger_domain(100%) |FLYWCH(100%),FLYWCH_N(100%),FLYWCH_u(100%) 14 15 17 122 259 ENST00000324350.9 ENST00000253928.14 downstream upstream duplicates(3),mismatches(5) CCTTCACCCGCCGGCTCCAG___TCCTGTGCCGTTTTCCGTCCGCGACTCTTCCGGCCCAGAGCTTTCGGAGTGCGGTTGCTCAGGGGAAGCCGTCGCCGCCCCCGCCTCGGGGCCGAGTGAGAGTGCCCGTCGCGTCGCGCCGCGTCGCCCCCCGGGCCGCCTCCTTGCCGCCAGTGGCGGGCTCCGTTCTCCCTCGAAGCACTCCCCCCAGCTCCATGAATGGAAATCGGCTCCGCAG|GACGGAACCACTGCACTCCAGGTTCCTTGCTGGGTGCTGAGCGTGGCCTGAGGGACAGGCCCTGGGTCCCGGGATGCCCCTGCCCGAGCCCAGCGAGCAGGAGGGCGAGAGTGTGAAGGCCGGCCAGGAGCCATCCCCCAAGCCAGGCACGGACGTCATCCCGGCAGCCCCCAGGAAGCCCAGGGAGTTCTCCAAACTGGTGCTGCTCACAGCCTCCGACCAAG MEIGSA|grnhctpgsllgaerglrdrpwvpgcpcpspasrrarv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7300 TMEM259::LSM7 ENSG00000182087.14::ENSG00000130332.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE TRUE 726 FALSE NA FALSE NA TMEM259 ENSG00000182087.14 protein_coding - - chr19:1009648-1021179:- chr19:1014192:- chr19:1009647-1021178:- chr19:1014191:- LSM7 ENSG00000130332.15 protein_coding - - chr19:2321520-2328611:- chr19:2321822:- chr19:2321519-2328610:- chr19:2321821:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Tumour-associated_protein(37%)|LSM_domain_(40%) Membralin(51%)|LSM(1%) 12 22 10 620 847 ENST00000593068.7 ENST00000587502.2 upstream downstream duplicates(2),mismatches(2) CTGGAGCAcGTGCGTGACAAGTGGCCGCGTGAGGGCATCCTGCGTGTGGAAGTGCGGCACAACTCGAGCCGCGCGCCCGTCTTCCTACAGTTCTGTGACAGCGGCGGCCGCGGGAGCTTCCCGGGCCTGGCCGTGGAACCAGGCAGCAACCTGGACATGGAAGATGAGGAGGAGGAAGAGCTGACCATGGAGATGTTTGGGAACAGCTCCATCAAG|ACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAGCTGGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGACGGCATGGAGGCCATCCCCAACCCCTTCATCCAGCAGCAGGACGCCTAGCCTGGCCGGGGGCGCGGGGGGTGCAGGGCAGGCCCGAGCAGCTCGGTTTCCCGCGGACTTGGCTGCTGCTCCCACCGCAGTACCGCCTCCTGGA LEHVRDKWPREGILRVEVRHNSSRAPVFLQFCDSGGRGSFPGLAVEPGSNLDMEDEEEEELTMEMFGNSSIK|tlttstssrrtpgswaswcagarpwc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7302 LSM14A::SCGB2B2 ENSG00000257103.9::ENSG00000205209.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1265 TRUE 492 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34209051:+ chr19:34663409-34720193:+ chr19:34699956:+ SCGB2B2 ENSG00000205209.8 protein_coding - - chr19:34590644-34677159:- chr19:34623357:- chr19:35081549-35168064:- chr19:35114262:- chr19:34214034,chr19:34214034,chr19:34214032 chr19:34628693,chr19:34628692,chr19:34628695 NA NA chr19:34704939,chr19:34704939,chr19:34704937 chr19:35119598,chr19:35119597,chr19:35119600 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Scd6-like_Sm_domain(100%)|Uteroglobin_family(100%) LSM14(100%),SM-ATX(100%)|Uteroglobin(100%) 16 13 11 2245 73 ENST00000544216.8 unknown downstream downstream duplicates(2),mismatches(5) AGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG___CTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAG|ATACTTAACAACCCATCTTCAAGCCTGCACTTTCCTCGAGTGCAGCCTGGATCTCTTTTAATCGTCAGACCCTGAAGTTTGCTTTAGGAAAGTCCCAACTTCACTCACATATAGAGTATTTAAACTCTGCTGGAAGGATGTTAGGTTACTCTTAAATCAAACCCTAACTGCTGCTGAGAAACAGTTGGCC SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQ|dt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7303 LSM14A::SCGB2B2 ENSG00000257103.9::ENSG00000205209.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1265 TRUE 492 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34209051:+ chr19:34663409-34720193:+ chr19:34699956:+ SCGB2B2 ENSG00000205209.8 protein_coding - - chr19:34590644-34677159:- chr19:34593599:- chr19:35081549-35168064:- chr19:35084504:- chr19:34214034,chr19:34214034,chr19:34214032 chr19:34628693,chr19:34628692,chr19:34628695 NA NA chr19:34704939,chr19:34704939,chr19:34704937 chr19:35119598,chr19:35119597,chr19:35119600 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Scd6-like_Sm_domain(100%)|Uteroglobin_family(9%) LSM14(100%),SM-ATX(100%)|Uteroglobin(2%) 2 2 1 2245 31 ENST00000544216.8 ENST00000601241.6 downstream downstream mismatches(1) TACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG___CTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAG|AAGAAGATCCTTCAGAGCAACGATTGCATAGAAGCAGCCTTCTGATCTGAGGACCCCTGCAGATCAGATATTGGCCCTCCTGCCTTCCTTGGGGCTCCCCGCGTTCCTG YSQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQ|eedpseqrlhrsslli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7304 LSM14A::SCGB2B2 ENSG00000257103.9::ENSG00000205209.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1265 TRUE 492 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34209051:+ chr19:34663409-34720193:+ chr19:34699956:+ SCGB2B2 ENSG00000205209.8 protein_coding - - chr19:34590644-34677159:- chr19:34594359:- chr19:35081549-35168064:- chr19:35085264:- chr19:34214034,chr19:34214034,chr19:34214032 chr19:34628693,chr19:34628692,chr19:34628695 NA NA chr19:34704939,chr19:34704939,chr19:34704937 chr19:35119598,chr19:35119597,chr19:35119600 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Scd6-like_Sm_domain(100%)|Uteroglobin_family(77%) LSM14(100%),SM-ATX(100%)|Uteroglobin(79%) 2 1 1 2245 24 ENST00000544216.8 ENST00000601241.6 downstream downstream duplicates(1) CCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG___CTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAAAGTAGTGCGGTTGGTTCTGCCTTTACACAGGATACAAGATCTCTAAAAACACAGTTATCTCAAG|GGGATGCCTGCCTGGATATCGATAAACTGCTTGCGAATGTTGTGTTTGATGTGTCCCAA...AATGAACACCTGCAGCTCAGTTCTGTGTTCTGGCATCTGTGTGGGGTTGGCTGTGACCGCATATGCAGAGTGTGACCAGGGTCCCAGTGTGAAAATATGCG PSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQ|gDACLDIDKLLANVVFDVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7305 LSM14A::SCGB2B2 ENSG00000257103.9::ENSG00000205209.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1265 TRUE 492 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34209051:+ chr19:34663409-34720193:+ chr19:34699956:+ SCGB2B2 ENSG00000205209.8 protein_coding - - chr19:34590644-34677159:- chr19:34608755:- chr19:35081549-35168064:- chr19:35099660:- chr19:34214034,chr19:34214034,chr19:34214032 chr19:34628693,chr19:34628692,chr19:34628695 NA NA chr19:34704939,chr19:34704939,chr19:34704937 chr19:35119598,chr19:35119597,chr19:35119600 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Scd6-like_Sm_domain(100%)|Uteroglobin_family(100%) LSM14(100%),SM-ATX(100%)|Uteroglobin(100%) 0 1 1 2245 22 ENST00000544216.8 ENST00000595326.1 downstream downstream none CGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG___CTGGAAGCTCTTTGACATCCTTTGGAACAGAAACATCAAACAGTGGTACCTTACCCCAA...CAGGATACAAGATCTCTAAAAACACAGTTATCTCAAG|CACTATTCACAGCCAAGATTTGACTCAACCTCAGTGTCCATCAACAAGTGAAAAGATGAAGAAA...TATATGaAATGAGACACTAGCCATAAAAAATTATAAAATTCTGTCATTTGCATCAACATGGATTAACTTGGAGCCATTGTGTTATGTGAAGTAAGCCAGGC QDTRSLKTQLSQ|alftaki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7306 ATP6V1A::CD200R1 ENSG00000114573.12::ENSG00000163606.11 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1A ENSG00000114573.12 protein_coding + + chr3:113746770-113812056:+ chr3:113747113:+ chr3:113465617-113530903:+ chr3:113465960:+ CD200R1 ENSG00000163606.11 protein_coding - + chr3:112921205-112975103:- chr3:112965091:+ chr3:112640052-112693950:- chr3:112683938:+ chr3:113765634,chr3:113765634 chr3:112946956,chr3:112946954 NA NA chr3:113484481,chr3:113484481 chr3:112665803,chr3:112665801 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 4 32 1 197 125 ENST00000273398.8 unknown downstream upstream mismatches(4) CTGAGGACTTCCCCTCCGTGGTGACAGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAG|TTTCAGGTATGTCTTTATCAGCAGTGTGAAAATGGACTATTATACCAAGTAAAGAGGAGGTTTCAAGACAGGAAGAATCAAGATTAAATCATATGCAGAACAGTCTTAACCTAAGAATTAAGAAGCTTTGTGATTTGGTAACAAGAAGATCATCAGTGACCTTAAGATCTGAAAGAGA___GAGTAACAGTGCAATTTGACATAAACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7309 LINC03009::SRRM3 ENSG00000290873.1::ENSG00000177679.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 729 TRUE 1267 TRUE 493 LINC03009 ENSG00000290873.1 lncRNA + + chr7:76549360-76627982:+ chr7:76551522:+ chr7:76178677-76257299:+ chr7:76180839:+ SRRM3 ENSG00000177679.16 protein_coding + + chr7:76201896-76287288:+ chr7:76235028:+ chr7:75831214-75916605:+ chr7:75864346:+ chr7:76558561,chr7:76558558 chr7:76217620,chr7:76217614 NA NA chr7:76187878,chr7:76187875 chr7:75846938,chr7:75846932 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Serine/arginine_repetitive_matrix_protein_C-terminus(100%),cwf21_domain(100%) |SRRM_C(100%),cwf21(100%) 6 7 16 134 105 ENST00000423084.1 ENST00000611745.2 downstream upstream duplicates(1),mismatches(10) GCGACGGGACCTGGGCCTGGCCCGTGTGTGTCCTCAGAGGCCTGGCGCCGGCCGTCGCTGTACG___GTCTATCAGCCACAGTCTCTGCAAGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG|GGCCAGCGGCCCAGGCCAGCGGCTCCAGGGCCAGCCACGATGTCCTCCACCGTGAACAACGGGGCGGCCAGCATGCAGTCCACACCCGACGCCGCGAACGGCTTCCCGCAGCCCAGCTCCTCCTCGGGGACCTGGCCGCGGGCGGAAGAGGAGCTGCGCGCCGCGGAGCCGGGCCTGGTGAAGCGCGCGCACCGCGAGATCCTGGACCACGAGCGCAAGCGGCGGGTGGAGCTCAAGTGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7310 LINC03009::SRRM3 ENSG00000290873.1::ENSG00000177679.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1267 TRUE 493 LINC03009 ENSG00000290873.1 lncRNA + + chr7:76549360-76627982:+ chr7:76549861:+ chr7:76178677-76257299:+ chr7:76179178:+ SRRM3 ENSG00000177679.16 protein_coding + + chr7:76201896-76287288:+ chr7:76235028:+ chr7:75831214-75916605:+ chr7:75864346:+ chr7:76558561,chr7:76558558 chr7:76217620,chr7:76217614 NA NA chr7:76187878,chr7:76187875 chr7:75846938,chr7:75846932 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Serine/arginine_repetitive_matrix_protein_C-terminus(100%),cwf21_domain(100%) |SRRM_C(100%),cwf21(100%) 2 2 3 88 105 ENST00000418663.5 ENST00000611745.2 downstream upstream duplicates(1),low_entropy(1),mismatches(4) GCGGGAGGTGATGGCGGAGGCGAAGGGGCGACGGGACCTGGGCCTGGCCCGTGTGTGTCCTCAGAGGCCTGGCGCCGGCCGTCGCTGTACGGTGAGCCCCAGGGAGGCGGgTCTGGGCCCCGAGAgGGACACCCACCTGGATTTGCCCCATAGGCCCGGCCCGGGCCCCTCGGGAGCAGAACAGCCTTGGTGAGGTGGACAGGAGGGGACCTCGTGAGCAGACGCGTGCGCCAGCGACAGCAGCCCGCCCCGGCCTCTCAGGAGCCGTGGGGCAGAGGCTGCGGAGCCCCAGGAGG|GGCCAGCGGCCCAGGCCAGCGGCTCCAGGGCCAGCCACGATGTCCTCCACCGTGAACAACGGGGCGGCCAGCATGCAGTCCACACCCGACGCCGCGAACGGCTTCCCGCAGCCCAGCTCCTCCTCGGGGACCTGGCCGCGGGCGGAAGAGGAGCTGCGCGCCGCGGAGCCGGGCCTGGTGAAGCGCGCGCACCGCGAGATCCTGGACCACGAGCGCAAGCGGCGGGTGGAGCTCAAGTGCATGGAGCTGCAGGAGATGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7311 BABAM2::PLB1 ENSG00000158019.21::ENSG00000163803.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BABAM2 ENSG00000158019.21 protein_coding + + chr2:27889941-28338901:+ chr2:27929908:+ chr2:28112808-28561768:+ chr2:28152775:+ PLB1 ENSG00000163803.13 protein_coding + - chr2:28457145-28644142:+ chr2:28481928:- chr2:28680012-28867008:+ chr2:28704795:- chr2:27941522,chr2:27941518 chr2:28540362,chr2:28540366 NA NA chr2:28164389,chr2:28164385 chr2:28763229,chr2:28763233 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Brain_and_reproductive_organ-expressed_protein_(BRE)(18%)| BRE(8%),PfkB(100%)| 3 14 7 230 55 ENST00000344773.6 unknown downstream downstream mismatches(2) AGTGGGACTGGATGCTACAAACTGTTTGAGGATAACTGACTTAAAATCTGG___CTGCACATCATTGACTCCTGGGCCCAACTGTGACCGATTTAAACTGCACATACCATATGCTGGAGAGACATTAAAGT|GATATGGCtCTGTTGCCTAGGCTGAAGTGCAGTGGTGCAATCACTGCTCACTACAGCCTTGACTTCTCAGGCTCAAACGATCCTCCTACCTCAACCACCCAAGTAGCTGGGACTACAAGCACACACCACGGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCAtGTATACATCCAGATGGCCTGAAGCATCTGAAGATCCACAAAAGAAGTGAAAATAGCCT VGLDATNCLRITDLKSGCTSLTPGPNCDRFKLHIPYAGETLK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7315 MRPL33::PLB1 ENSG00000243147.8::ENSG00000163803.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27929908:+ chr2:27994584-28210954:+ chr2:28152775:+ PLB1 ENSG00000163803.13 protein_coding + - chr2:28457145-28644142:+ chr2:28481928:- chr2:28680012-28867008:+ chr2:28704795:- chr2:27941522,chr2:27941518 chr2:28540362,chr2:28540366 NA NA chr2:28164389,chr2:28164385 chr2:28763229,chr2:28763233 NA NA sense antisense unknown 3'UTR/splice-site intron inversion/3'-3' high none Ribosomal_protein_L33(100%)| PfkB(100%),Phos_pyr_kin(100%),Ribosomal_L33(100%)| 3 14 7 230 55 ENST00000448427.1 unknown downstream downstream mismatches(2) AGTGGGACTGGATGCTACAAACTGTTTGAGGATAACTGACTTAAAATCTGG___CTGCACATCATTGACTCCTGGGCCCAACTGTGACCGATTTAAACTGCACATACCATATGCTGGAGAGACATTAAAGT|GATATGGCtCTGTTGCCTAGGCTGAAGTGCAGTGGTGCAATCACTGCTCACTACAGCCTTGACTTCTCAGGCTCAAACGATCCTCCTACCTCAACCACCCAAGTAGCTGGGACTACAAGCACACACCACGGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCAtGTATACATCCAGATGGCCTGAAGCATCTGAAGATCCACAAAAGAAGTGAAAATAGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7324 DENND10::GRK5 ENSG00000119979.18::ENSG00000198873.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 730 FALSE NA FALSE NA DENND10 ENSG00000119979.18 protein_coding + + chr10:119104086-119137984:+ chr10:119108164:+ chr10:120863598-120897496:+ chr10:120867676:+ GRK5 ENSG00000198873.12 protein_coding + + chr10:119207571-119459745:+ chr10:119423166:+ chr10:120967083-121219257:+ chr10:121182678:+ chr10:119108548,chr10:119108548 chr10:119403904,chr10:119403902 NA NA chr10:120868060,chr10:120868060 chr10:121163416,chr10:121163414 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Protein_kinase_domain(100%),Regulator_of_G_protein_signaling_domain(48%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),RGS(4%),Sulfakinin(100%) 12 5 5 120 60 ENST00000361432.3 ENST00000392870.3 downstream upstream duplicates(1),mismappers(1),mismatches(1) GGAAGATGGCTGCGGCCGAGGTGGCGGACACTCAGCTGATGCTTGGAGTCGGGCTGATCG___TGACC...___AAAAGGACACAAATGGAGAAGTTCTGTGGGTGTGGTGTTATCCTTCCACGACAGCCACATTAAGGAACCTGCTGCTGAGAAAATGCTGCCTTACAGATGAAAACAAACTTCTCCATCCCTTTGTCTTTGGTCAGTACAGAAGAACATGGTTTTATATCACAACAATTGAAGTTCCAGATTCTTCCATTTTGAAAAAG|TCCCCTGTTTTCATAGCCCAAGTTGGCCAAGACCTGGTCTCCCAGACGGAGGAGAAGCTCCTACAGAAGCCGTGCAAAGAACTCTTTTCTGCCTGTGCACA___GTCTGTCCACGAGTACCTGAGGGGAGAACCATTCCACGAATATCTGG KDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFVFGQYRRTWFYITTIEVPDSSILKK|SPVFIAQVGQDLVSQTEEKLLQKPCKELFSACAQSVHEYLRGEPFHEYL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE G protein-coupled receptor kinase 5 AGC GRK GRK P34947 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7327 USP32::GGA3 ENSG00000170832.13::ENSG00000125447.18 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 732 TRUE 1271 TRUE 494 USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345481:- chr17:58254688-58499831:- chr17:58422842:- GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75246796:- chr17:73232694-73258444:- chr17:73242877:- chr17:60335442 chr17:75253789 NA NA chr17:58412803 chr17:73249870 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Adaptin_C-terminal_domain(100%),GAT_domain(100%),N-terminal_extension_of_GAT_domain(100%),VHS_domain(93%) |Alpha_adaptinC2(100%),GAT(100%),GGA_N-GAT(100%),VHS(19%) 6 10 5 162 134 ENST00000300896.9 ENST00000621217.4 upstream downstream mismatches(1) GGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG___TTACAGATGTAGAGCTAAAACGACTGAAGGATGCTTTCAAGAGGACCTGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG|ATAAAGCCACCAATCCTTCCAACCGCCAGGAGGACTGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGG___GCCACAGATCGCCGTCCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACG___GTGCTGGAGGCATGCATGAAGAACTGTGGG GFLSYEEALRRVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAE|ikppilptarrtgnt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7328 USP32::GGA3 ENSG00000170832.13::ENSG00000125447.18 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1271 TRUE 494 USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345481:- chr17:58254688-58499831:- chr17:58422842:- GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75249008:- chr17:73232694-73258444:- chr17:73245089:- chr17:60335442 chr17:75253789 NA NA chr17:58412803 chr17:73249870 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Adaptin_C-terminal_domain(100%),GAT_domain(100%),N-terminal_extension_of_GAT_domain(100%),VHS_domain(93%) |Alpha_adaptinC2(100%),GAT(100%),GGA_N-GAT(100%),VHS(31%) 1 1 5 162 7 ENST00000300896.9 ENST00000621870.4 upstream downstream none GGtTTCCTCAGCTACGAGGAGGCGCTGAGGAGAG___TTACAGATGTAGAGCTAAAACGACTGAAGGATGCTTTCAAGAGGACCTGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG|CCACAACAGAAACACTGCCGGGGAGGCCGAGCCCCGACCTGGGAAGCAGGGTGATACACTGGGTGCCACGGGCCTTCCC GFLSYEEALRRVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAE|pqqkhcrggraptweag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7329 PPL::C16orf89 ENSG00000118898.16::ENSG00000153446.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE TRUE 733 FALSE NA FALSE NA PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4903886:- chr16:4932508-5010742:- chr16:4953887:- C16orf89 ENSG00000153446.16 protein_coding - - chr16:5044122-5066110:- chr16:5056188:- chr16:5094123-5116111:- chr16:5106189:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF4735)(47%) |DUF4735(55%) 5 12 4 315 22 ENST00000592772.1 ENST00000315997.5 upstream downstream duplicates(1),mismatches(1) CGTGGACACAGAGGCCAAGATGCAGAGT___GACCTGGCTCGGCTGCAGGAGGGTCGGCAGCCTGAGCACCGGGACGTGACCCTGCAGAAGGTGTTGGACTCTGAGAAGCTGCTCTATGTGCTAGAGGCGGATGCGGCCATTGCCAAGCACATGAAGCACCCACAGGGGGACATGATCGCCGAGGA|AGGGGaTGCACACAGGGACCACTCCAACAGAGCCAGGACTATATCAACCTCTTCTGCGCCAACATGATGGACTTGAACCGCAGAGCTGAGGCCATCGGATACGCCTACCCTACCCGGGACATCTTCATGGAAAACAGTATGGCCAGCATTCTGCCCCCGGGGCAAAGGAACAGGGTGTCCCCCCACC MQSDLARLQEGRQPEHRDVTLQKVLDSEKLLYVLEADAAIAKHMKHPQGDMIAEe|gdahrdhsnrartistssapt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7330 PSMA4::TBC1D2B ENSG00000041357.16::ENSG00000167202.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSMA4 ENSG00000041357.16 protein_coding + + chr15:78540405-78552417:+ chr15:78546698:+ chr15:78832747-78844759:+ chr15:78839040:+ TBC1D2B ENSG00000167202.12 protein_coding - + chr15:77984036-78077724:- chr15:78000980:+ chr15:78276378-78370066:- chr15:78293322:+ chr15:78546936 chr15:77996843 NA NA chr15:78839278 chr15:78289185 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Proteasome_subunit(96%),Proteasome_subunit_A_N-terminal_signature(100%)| Proteasome(66%),Proteasome_A_N(100%)| 3 8 9 1692 20 ENST00000044462.12 unknown downstream upstream mismatches(1) CTGGGATAAGCACTATGGCTTTCAGCTCTATCAGAGTGACCCTAGTGGAAATTACGGGGGATGGAAGGCCACATGCATTGGAAATAATAGCGCT___GCAGCTGTGTCAATGTTGAAACAAGACTATAAAGAAGGAGAAATGACCTTGAAGTCAGCACTTGCTTTAGCTATCAAAGTACTAAATAAGACCATGGATGTTAGTAAACTCTCTGCTGAAAAAG|GACTTCCCAGCACTCAGGATGAAGCCTCAAGTCCTGAGAGAAGTCTGCAATCACCCTGACAGCCCAGCTCTGCTATGGCCCAGCCACACTGGCACCAGCCGGGCTGAGCTGCCTCCACACTTCCCCAAACACACGTGCCCCACAGCTCTGCGCCACCACTCCTGAAGGACCCCCTGTCCCCATACTGTTTCCTTGCTGCCCCTTGCCCAGC WDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEK|glpstqdeassperslqsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7331 ZNF507::DPY19L3 ENSG00000168813.17::ENSG00000178904.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32347338:+ chr19:32836500-32878573:+ chr19:32838244:+ DPY19L3 ENSG00000178904.19 protein_coding + - chr19:32405543-32485895:+ chr19:32480317:- chr19:32896449-32976801:+ chr19:32971223:- chr19:32348139 chr19:32482563 NA NA chr19:32839045 chr19:32973469 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 8 3 9 287 28 ENST00000355898.6 unknown downstream downstream duplicates(1),mismatches(2) GCAAGGACGAGGGCGAGGGCACGGCCGGGTCCTGGCTGGCCAAACGAGGCTCGCGGAAGCAGCAGCCGCCGCCTGACCGCAG___CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG|GGCTGAGTCTAAGACCTAACACCCAAGGTGCTCTCTCCAGCCCAGGCCACGCTGCACTCGCTCATTTGCAGGCCTGGAGTGTGTGCGTGGAAGTTCCCAGAACGCTGTGAGTGCTCGGCCTTGGGAAGAGAGTGAGCCAGGAAGAACACATCTGGATTCAGAATGTATTACTTCAAGTCAGGACTATATTCATCAGTAGGCACCAATTCTAAGACTGCTTTCCCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7332 KRI1::DNM2 ENSG00000129347.21::ENSG00000079805.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KRI1 ENSG00000129347.21 protein_coding - - chr19:10553085-10566031:- chr19:10564929:- chr19:10663761-10676707:- chr19:10675605:- DNM2 ENSG00000079805.19 protein_coding + - chr19:10718055-10833488:+ chr19:10756661:- chr19:10828731-10944164:+ chr19:10867337:- chr19:10564091,chr19:10564093 chr19:10757665,chr19:10757669 NA NA chr19:10674767,chr19:10674769 chr19:10868341,chr19:10868345 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none none none 5 10 3 391 47 ENST00000432197.5 unknown upstream downstream mismatches(2) CGAGGAACTGCAGCGGC___GAATTTGATCCCCAGCAGGAGCGGGACTTTTACAAAACGCTCTCCTTGTTGAAGAAGAAGGACCCCCGCATTTATCAGAAAGATGCCACCTTCTATAACAGAACAG|CCACAGGCAGCACAGTCAGCTCTCCAGGCCTGGGATGCTACCTGTCTTCGAGCCACACTCCTGAGGATGACAAAGAGCCCGAGGGACCTGCCTGCCAGGCACTAGGCCTGTCACGCCAtGTGCCCCAGTTCAAGCTGATGCCTGAGCTCTAATCCCTTTCCGTCAGCCTCCCATTCGGCTGATGAGGAGCCTGAGGCACAAACAGGATACGAGACTTGGACAACATCACAGCTCATGGCTTGCATGAAAAGGAGCGAACCTTTCTCACTGGCTCCTGAGCACTTGGGGAGGTGCTGGTGACACTGGCGCCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7333 RAB3GAP1::MAP3K19 ENSG00000115839.19::ENSG00000176601.14 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RAB3GAP1 ENSG00000115839.19 protein_coding + + chr2:135052289-135176667:+ chr2:135135932:+ chr2:135809859-135934237:+ chr2:135893502:+ MAP3K19 ENSG00000176601.14 protein_coding - + chr2:134964485-135047468:- chr2:134997921:+ chr2:135722055-135805038:- chr2:135755491:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Rab3_GTPase-activating_protein_catalytic_subunit(18%)| Rab3-GAP_cat_C(66%),Rab3-GTPase_cat(0%)| 2 8 6 427 14 ENST00000539493.3 unknown downstream upstream none AAAGCAGGAGACCAGTTGGTGCCAGATAATCTAAAAGAAACAGATAAGGAAAAGGGAGAGGTAGGAAAATCTTGGGATTCCTGGAGTGACAGCGAAGAAGAATTTTTTGAATGCCTAAGTGATACTGAAGAACTTAAAGGAAgTGGACAAGAGAGTGGCAAGAAAGGAGGACCTAAGGAGATGGCAAATTTAAGGCCGGAAGGACGGCTCTATCAGCATGGGAAACTTACACTGCTGCATAATGGAGAACCTCTCTACATTCCAGTAACCCAG|GATGTGTCACAGCTCCACTGGCATGCAGTCTCCCTCATTGTGATAAATCAATGAATGTAACTTGTTGGATTATAAGGTTGTTCCTGGTGGTTTTGGCTGGTTGGTTGAGGACAGTGGTAAACAAGTAGCAAAGACAATgTTGCCGCAGGGGGAAATGCTGGCATCAGTGCTGCTATCTAGCAAATGAG KAGDQLVPDNLKETDKEKGEVGKSWDSWSDSEEEFFECLSDTEELKGsGQESGKKGGPKEMANLRPEGRLYQHGKLTLLHNGEPLYIPVTQ|dvsqlhwhavslivinq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7334 TNIK::EIF5A2 ENSG00000154310.17::ENSG00000163577.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 734 FALSE NA FALSE NA TNIK ENSG00000154310.17 protein_coding - - chr3:171058414-171460408:- chr3:171460007:- chr3:170776203-171178197:- chr3:171177796:- EIF5A2 ENSG00000163577.8 protein_coding - - chr3:170888418-170908644:- chr3:170894423:- chr3:170606207-170626433:- chr3:170612212:- chr3:171394933,chr3:171394935 chr3:170900478,chr3:170900477 NA NA chr3:171112722,chr3:171112724 chr3:170618267,chr3:170618266 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Eukaryotic_elongation_factor_5A_hypusine__DNA-binding_OB_fold(88%) |eIF-5a(7%) 6 7 2 57 215 ENST00000436636.7 ENST00000295822.7 upstream downstream duplicates(2),inconsistently_clipped(1),low_entropy(1),mismatches(1) GCATGAGGACGCGAGTGAAATAGACCAAGGTGGAATTTCCAAGGGAAAAGCTTCGGGGTGGTTTTGGTCCATTTCTCCAGCGAAGAAGTAGACATGGCGAGCGACTCCCCGGCTCGAAGCCTGGATGAAATAGATCTCTCGGCTCTGAGG|CTGATATGCATTCAAGATGGTTACCTTTCCCTGCTGACAGAAACTGGTGAAGTTCGTGAGGATCTTAAACTGCCAGAAGGTGAACTAGGCAAAGAAATAGAGGGAAAATACAATGCAGGTGAAGATGTACAG___GTGTCTGTCATGTGTGCAATGAGTGAAGAATATGCTGTAGCCATAAAACC MASDSPARSLDEIDLSALR|LICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE TRAF2 and NCK-interacting protein kinase STE STE20 MSN Q9UKE5 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7335 SOX5::ENSG00000255745 ENSG00000134532.20::ENSG00000255745.2 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24277216:- chr12:23682438-24715478:- chr12:24430150:- ENSG00000255745 ENSG00000255745.2 lncRNA + - chr12:24704503-24775565:+ chr12:24751266:- chr12:24857437-24928499:+ chr12:24904200:- chr12:24263583 chr12:24753712 NA NA chr12:24416517 chr12:24906646 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 6 5 3 17 20 ENST00000646273.1 unknown upstream downstream duplicates(1),mismappers(1) AGGCGAGCCACCAAAACCCATCTCCAGTCTCCTCCCGGGGGCCCCCAGCCCGCCTCTGTGCCACTTTGCATCCCACGCCGGAGGAGGCATTAACGAGACCG...AGCCATACTTCAGGAGGATCCTCAGAAGTTTTGGACAAGCCTCCCCAAATGTGGCAG___GTGCTGTGCTGGCCATTGGTGACCCAAAGATGATGAAAAATATGTTCCTGCCCACAAGGAGTTAGCGACCTACTGGG___CTTTCCTCTTGCTGATGACATGATTCCTGTTTGAATCTGTTGACAAGATTCTGAAAGCTGAACAGAGAATTCTGGCACTGCACTGGGTAGGAAAAAG|ATTCTTCAAGGTTTAACAGAATACCTCAACCTGTGAAATAACTTGCTGTCATTGTGGCATAACCTTTCAGAGAAGGAGAGATCATTATTGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7345 NSD1::ZNF346 ENSG00000165671.22::ENSG00000113761.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1274 TRUE 495 NSD1 ENSG00000165671.22 protein_coding + + chr5:177131830-177300213:+ chr5:177267718:+ chr5:176558831-176727214:+ chr5:176694719:+ ZNF346 ENSG00000113761.12 protein_coding + + chr5:177022696-177081189:+ chr5:177050703:+ chr5:176449697-176508190:+ chr5:176477704:+ chr5:177268987,chr5:177268985 chr5:177044925,chr5:177044920 NA NA chr5:176695988,chr5:176695986 chr5:176471926,chr5:176471921 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PWWP_domain(57%)|Zinc-finger_of_C2H2_type(49%) PWWP(71%)|zf-C2H2_2(2%),zf-met(3%) 1 1 5 213 25 ENST00000508896.7 ENST00000511834.5 downstream upstream duplicates(1),mismatches(1) CTTGCATCTAATAGTATCATCTGCCCTAATCACTTTACCCCTAGGCGGGGCTGCCGAAATCATGAGCATGTTAATGTTAGCTGGTGCTTTGTGTGCTCAGAAG___GAGGCAGCCTTCTGTGCT...TCTTGCCCTGCTGCTTTTCATCGTGAATGCCTGAACATTGATATCCCTGAAGGAAACTGGTATTGCAATGACTGTAAAGCAGGCAAAAAGCCACACTACAGGGAGATTGTCTGGGTAAAAGTTGGACGATACAG|CTCTGTCAAAACGCCTTACAAATCCTTTCCTTGTGGCCTCCACCTTAGCCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCATGCAACTTTCAACGACCCTGTCATGGCTCAACAACATTATGTGGGCAAGAAACACAGAAAACAGGAG...GGCTACCCCTGCAAAACATGTAAGATAGTGCTGAACTCCATAGAACAGTACCAAGCTCATGTCAGCGGCTTCAAACACAAGAACCA___GTCtCCAAAAACAG SCPAAFHRECLNIDIPEGNWYCNDCKAGKKPHYREIVWVKVGRYs|svktpyksfpcglhlslape* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Adrenal,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Lung squamous cell carcinoma,Adrenocortical carcinoma OVARY,BREAST,CERVIX,BREAST,LUNG,ADRENAL_GLAND no_match 176678854,176563031,176619020,176619020,176696808|176700785,176563031|176563031|176563031 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE 176468127,176468127,176468127,176489059,176468127|176468127,176489059|176477752|176491513 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,Out-of-frame,In-frame,In-frame,In-frame,Out-of-frame TRUE Breast BREAST no_match 177136030|177169559 FALSE|FALSE 177041126|177041126 FALSE|FALSE TRUE nuclear receptor binding SET domain protein 1 1 AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7346 NSD1::ZNF346 ENSG00000165671.22::ENSG00000113761.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1274 TRUE 495 NSD1 ENSG00000165671.22 protein_coding + + chr5:177131830-177300213:+ chr5:177267718:+ chr5:176558831-176727214:+ chr5:176694719:+ ZNF346 ENSG00000113761.12 protein_coding + + chr5:177022696-177081189:+ chr5:177050751:+ chr5:176449697-176508190:+ chr5:176477752:+ chr5:177268987,chr5:177268985 chr5:177044925,chr5:177044920 NA NA chr5:176695988,chr5:176695986 chr5:176471926,chr5:176471921 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PWWP_domain(57%)|Zinc-finger_of_C2H2_type(49%) PWWP(71%)|zf-C2H2_2(1%),zf-met(3%) 0 2 4 213 140 ENST00000508896.7 ENST00000358149.8 downstream upstream mismatches(2) GCCCTAATCACTTTACCCCTAGGCGGGGCTGCCGAAATCATGAGCATGTTAATGTTAGCTGGTGCTTTGTGTGCTCAGAAG___GAGGCAGCCTTCTGTGCT...TCTTGCCCTGCTGCTTTTCATCGTGAATGCCTGAACATTGATATCCCTGAAGGAAACTGGTATTGCAATGACTGTAAAGCAGGCAAAAAGCCACACTACAGGGAGATTGTCTGGGTAAAAGTTGGACGATACAG|CCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCATGCAACTTTCAACGACCCTGTCATGGCTCAACAACATTATGTGGGCAAGAAACACAGAAAACAGGAGACCAAGCTCAAACTAATGGC...CTGACTTTCCAG___CTGGAAAGGGCTACCCCTGCAAAACATGTAAGATAGTGCTGAACTCCATAGAACAGTACCAAGCTCATGTCAGCGGCTTCAAACACAA...AATGCAAAGGCAACCCATTCAGAAAGACTCAACCACCTTGGAAGACTAGAGGTGATTCTGCCCAGCATCCCATATTGGGCCAGCCATGAGCCAGCTTCCCG SCPAAFHRECLNIDIPEGNWYCNDCKAGKKPHYREIVWVKVGRYs|lape* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Adrenal,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Lung squamous cell carcinoma,Adrenocortical carcinoma OVARY,BREAST,CERVIX,BREAST,LUNG,ADRENAL_GLAND no_match 176678854,176563031,176619020,176619020,176696808|176700785,176563031|176563031|176563031 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE 176468127,176468127,176468127,176489059,176468127|176468127,176489059|176477752|176491513 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|FALSE YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,Out-of-frame,In-frame,In-frame,In-frame,Out-of-frame TRUE Breast BREAST no_match 177136030|177169559 FALSE|FALSE 177041126|177041126 FALSE|FALSE TRUE nuclear receptor binding SET domain protein 1 1 AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7347 NSD1::ZNF346 ENSG00000165671.22::ENSG00000113761.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1274 TRUE 495 NSD1 ENSG00000165671.22 protein_coding + + chr5:177131830-177300213:+ chr5:177267718:+ chr5:176558831-176727214:+ chr5:176694719:+ ZNF346 ENSG00000113761.12 protein_coding + + chr5:177022696-177081189:+ chr5:177062058:+ chr5:176449697-176508190:+ chr5:176489059:+ chr5:177268987,chr5:177268985 chr5:177044925,chr5:177044920 NA NA chr5:176695988,chr5:176695986 chr5:176471926,chr5:176471921 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PWWP_domain(57%)|Zinc-finger_of_C2H2_type(24%) PWWP(71%)|zf-met(1%) 1 3 2 213 215 ENST00000508896.7 ENST00000358149.8 downstream upstream mismatches(1) GCCCTAATCACTTTACCCCTAGGCGGGGCTGCCGAAATCATGAGCATGTTAATGTTAGCTGGTGCTTTGTGTGCTCAGAAG___GAGGCAGCCTTCTGTGCT...TCTTGCCCTGCTGCTTTTCATCGTGAATGCCTGAACATTGATATCCCTGAAGGAAACTGGTATTGCAATGACTGTAAAGCAGGCAAAAAGCCACACTACAGGGAGATTGTCTGGGTAAAAGTTGGACGATACAG|CTGGAAAGGGCTACCCCTGCAAAACATGTAAGATAGTGCTGAACTCCATAGAACAGTACCAAGCTCATGTCAGCGGCTTCAAACACAAGAACCA___GTCACCAAAAACAGTGGCATCATCCCTGGGCCAGATTCCAATGCAAAGGCAACCgATTCAGAAAGtCTCAgCCACCTTGGAAGACTAGAGGTGATTCTGCC SCPAAFHRECLNIDIPEGNWYCNDCKAGKKPHYREIVWVKVGRYs|wkglplqnm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Adrenal,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Lung squamous cell carcinoma,Adrenocortical carcinoma OVARY,BREAST,CERVIX,BREAST,LUNG,ADRENAL_GLAND no_match 176678854,176563031,176619020,176619020,176696808|176700785,176563031|176563031|176563031 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE 176468127,176468127,176468127,176489059,176468127|176468127,176489059|176477752|176491513 FALSE,FALSE,FALSE,TRUE,FALSE|FALSE,TRUE|FALSE|FALSE YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,Out-of-frame,In-frame,In-frame,In-frame,Out-of-frame TRUE Breast BREAST no_match 177136030|177169559 FALSE|FALSE 177041126|177041126 FALSE|FALSE TRUE nuclear receptor binding SET domain protein 1 1 AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7348 GLB1::SUSD5 ENSG00000170266.16::ENSG00000173705.9 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GLB1 ENSG00000170266.16 protein_coding - - chr3:32996609-33097202:- chr3:33068230:- chr3:33038101-33138694:- chr3:33109722:- SUSD5 ENSG00000173705.9 protein_coding - - chr3:33150043-33218810:- chr3:33175074:- chr3:33191535-33260302:- chr3:33216566:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Glycosyl_hydrolases_family_35(35%)| Glyco_hydro_35(56%),Glyco_hydro_42(30%),Metallophos(100%)| 1 4 2 451 21 ENST00000307363.10 ENST00000309558.8 upstream downstream mismatches(1) ATtTTTTCTTCGGCTGGCTCATGAGCTGGGACTGCTGGTTATCCTGAGGCCCGGGCCCTACATCTGTGCAGAGTGGGAAATG___GGAGGATTACCTGCTTGGCTGCTAGAGAAAGAGTCTATTCTTCTCCGCTCCTCCGACCCAG|AGAAGCCGTGTGGAGACCCGCCTTCGTTCCCACACACCATCCTGCAGGGCCGCACCGGCTTGGAAATGGGGGATGAACTGCTGTACGTGTGTGCCCCAGGCCACATCATGGGCCACCGGGAGACCGCCTTCACCTTGCTATGTAACAGCTGTGGGGAGTGGTACGGCCTGGTGCAGGCCTGTGGGAAAG___ATGAGGCTGAGGCACACATTGACTATGAAGATAACTTCCCTG fFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDP|eKPCGDPPSFPHTILQGRTGLEMGDELLYVCAPGHIMGHRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEDNFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7349 SNED1::KIF1A ENSG00000162804.15::ENSG00000130294.18 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNED1 ENSG00000162804.15 protein_coding + + chr2:240998618-241095568:+ chr2:241070201:+ chr2:241938035-242034983:+ chr2:242009616:+ KIF1A ENSG00000130294.18 protein_coding - + chr2:240713761-240824293:- chr2:240776517:+ chr2:241653178-241763710:- chr2:241715934:+ chr2:241071269,chr2:241071270 chr2:240776453,chr2:240776451 NA NA chr2:242010684,chr2:242010685 chr2:241715870,chr2:241715868 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none EGF-like_domain(90%),Fibronectin_type_III_domain(100%),Human_growth_factor-like_EGF(100%),Nidogen-like(100%)| EGF(98%),EGF_CA(100%),NIDO(100%),fn3(100%),hEGF(100%)| 1 1 4 34 7 ENST00000310397.13 unknown downstream upstream mismatches(1) CTTTAG___GGCCCTGCTGCCTGGGAAGAGGTACACCATCCAGCTGACCACCCTCAGTGGGCTCAGGGGAGAGGAGCACCCCACAGAGAGCCTGGCCACCGCGC...ATCAATGTGACCACCAGCCAGAGCACCAAGAGCCGCTATGTCCCCAACGGGAAGCTGGCGTCCTACACGGTGCGCGACCTGCTGCCGGGACGGCGGTACCAGCTCTCTGTGATAGCA...CGCAGCACAGCGAGCCCGCCCACCTCTACATCATCACCT|AATGAAGCATCCTCCATGCTCTTGCTGCCTCTTTGGCTCTTTAAAATATGGACTCCATCCACATAATGCCTGCCAGGAATTGCTTCTGACAGACACTCTGTGACTGACTTAATGATCCC...TATGCATTGGCTTATGAAGCATTTCCAGAGCACCTGCTGGGCCGGCAGATGAGGCCTCTGACCCTGcAGCCTGCACCCCAGGACATGCACGCAGATGCC QHSEPAHLYIIT|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7350 PHF20::CDH4 ENSG00000025293.17::ENSG00000179242.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF20 ENSG00000025293.17 protein_coding + + chr20:35771974-35950370:+ chr20:35917662:+ chr20:34359896-34538292:+ chr20:34505584:+ CDH4 ENSG00000179242.16 protein_coding + + chr20:61252261-61940617:+ chr20:61553792:+ chr20:59827317-60515673:+ chr20:60128848:+ chr20:35919265,chr20:35919266 chr20:61553497,chr20:61553495 NA NA chr20:34507187,chr20:34507188 chr20:60128553,chr20:60128551 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none DNA_repair_protein_Crb2_Tudor_domain(100%),Protein_of_unknown_function_(DUF3776)(100%)|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%),Cadherin_prodomain_like(68%) AT_hook(100%),DUF3776(100%),MBT(100%),Tudor_3(100%)|Cadherin(100%),Cadherin_C(100%),Cadherin_pro(38%) 0 4 2 215 20 ENST00000374012.8 unknown downstream upstream duplicates(1) TGATGAGTATGGCCAAGATGTGGATGTGACCACCAACCCAGATGAGGAACTTGATGGGGATGACCGCTATGACTTCGAGGTGGTCCGCTGCATCTGTGAGGTCCAGGAGGAAAATGACTTCATGATTCAG|GTTCCCAAAGCTGTGTTGCTGCTGGACCTCGCTTGGTAGATATGTGCATCAAATATGGACAGCCGGGAGGCAAGTTCCCTCCAAAATGAGTCgTGACTCCAGAACTGTGAGCTTCAAGGTGAGCCTCAGATGCAACTAATAATTTACAGCATTGTGGTAAGCTGTGCCTGCAGGGGCCAGGTCCCTGTCCTAGGAGCTGGTCAGTGATTTCCATCTGCTCTGAGGAGCACCC DEYGQDVDVTTNPDEELDGDDRYDFEVVRCICEVQEENDFMIQ|vpkavllldlaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7351 MSL2::STAG1 ENSG00000174579.5::ENSG00000118007.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1275 TRUE 496 MSL2 ENSG00000174579.5 protein_coding - - chr3:136148917-136197241:- chr3:136196150:- chr3:135867759-135916083:- chr3:135914992:- STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136398829:- chr3:136055078-136471245:- chr3:136117671:- chr3:136149989,chr3:136149991 chr3:136408297,chr3:136408299 NA NA chr3:135868831,chr3:135868833 chr3:136127139,chr3:136127141 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 3 1 71 101 ENST00000473093.2 ENST00000383202.7 upstream downstream mismatches(1) GGGAGTCTCGGGGATGACAGTGGCTTTGCCCGTTGGGGTAACGGTCGTCGTCGCCGCCAGCAGAGGCCTGAGGCGCCACACAGCCCGCGGGATCCATTAAGGCCGCAGCAGCCCGGGCCCTACCGAGCTGGAGTGGCGCGTGGAGTCGGG|ATAGTCGTGCAAGCACTGCAGTGTTCCCATTATTCGATTCTTTGGCAGTTGGTGAAAATTACTGATGGCTCTCCTTCCAAA___GAGGATTTGTTGGTATTGAGGAAAACGGTGAAATCCTTTTTGGCTGTTTGCCAGCAGTGCCTGTCTAATGTTAATACTCCAGTG...GAGGGTGATGAAGAAGATGAAGCTAATAAAATTGAGGCCTTACATAAAAGAAGGAATCTACTTGCTGCTTTCAGCAAACTTATCATTTATGACATTGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Bladder Urothelial Carcinoma,Breast invasive carcinoma OVARY,BLADDER,BREAST no_match 135913814,135913814|135913814,135913814 FALSE,FALSE|FALSE,FALSE 136068205,136349823|136323315,136349823 FALSE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,YES Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 7352 MSL2::STAG1 ENSG00000174579.5::ENSG00000118007.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1275 TRUE 496 MSL2 ENSG00000174579.5 protein_coding - - chr3:136148917-136197241:- chr3:136196572:- chr3:135867759-135916083:- chr3:135915414:- STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136398829:- chr3:136055078-136471245:- chr3:136117671:- chr3:136149989,chr3:136149991 chr3:136408297,chr3:136408299 NA NA chr3:135868831,chr3:135868833 chr3:136127139,chr3:136127141 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 0 4 101 ENST00000703104.1 ENST00000383202.7 upstream downstream none CTCGCAGAGAGCATGCTCCATTCTGAGAGTCGAAGTGGAGAGCCAGGCATGCGCAGTGAGCCCAGG|ATAGTCGTGCAAGCACTGCAGTGTTCCCATTATTC...TCTTCTGATGATTTTCAGCCACCAATTAATGACAGGTGGCAGAGAGGGCCTTCAGCCTTTGGTGTTCAATCCAGATACTGGACTCCAATCTGAACTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Bladder Urothelial Carcinoma,Breast invasive carcinoma OVARY,BLADDER,BREAST no_match 135913814,135913814|135913814,135913814 FALSE,FALSE|FALSE,FALSE 136068205,136349823|136323315,136349823 FALSE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,YES Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 7353 MSL2::STAG1 ENSG00000174579.5::ENSG00000118007.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1275 TRUE 496 MSL2 ENSG00000174579.5 protein_coding - - chr3:136148917-136197241:- chr3:136194972:- chr3:135867759-135916083:- chr3:135913814:- STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136377752:- chr3:136055078-136471245:- chr3:136096594:- chr3:136149989,chr3:136149991 chr3:136408297,chr3:136408299 NA NA chr3:135868831,chr3:135868833 chr3:136127139,chr3:136127141 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none zinc_RING_finger_of_MSL2(9%)| zf-RING_10(0%)| 0 1 0 187 114 ENST00000309993.3 ENST00000383202.7 upstream downstream none CTTGCCTTACTTCCGACAGTCCCTTTCGTGCTGTGTTTGCG|GAGGATTTGTTGGTATTGAGGAAAACGGTGAAATCCTTTTTGGCTGTTTGCCAGCAGTGCCTGTCTAATGTTAATACTCCAGTGAAAGAACAG___GCTTTCATGTTACTCTGTGATCTTCTGATGATTTTCAGCCACC LPYFRQSLSCCVC|ggfvgieengeilfgclpavpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Bladder Urothelial Carcinoma,Breast invasive carcinoma OVARY,BLADDER,BREAST no_match 135913814,135913814|135913814,135913814 TRUE,TRUE|TRUE,TRUE 136068205,136349823|136323315,136349823 FALSE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,YES Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 7354 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 2 2 1 483 140 ENST00000506640.3 unknown upstream downstream mismatches(1) CAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAACGTGA___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCC...GTcCCTCCGgTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGATTCCTTCAACCGTCACTGAGCCTGTCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7355 ZNF429::ZNF723 ENSG00000197013.11::ENSG00000268696.3 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1276 TRUE 497 ZNF429 ENSG00000197013.11 protein_coding + + chr19:21496682-21556270:+ chr19:21505774:+ chr19:21679484-21739072:+ chr19:21688576:+ ZNF723 ENSG00000268696.3 protein_coding + + chr19:22832291-22858667:+ chr19:22849198:+ chr19:23015093-23041469:+ chr19:23032000:+ chr19:21514937 chr19:22848592 NA NA chr19:21697739 chr19:23031394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%) 3 1 0 61 6 ENST00000597078.5 ENST00000600766.3 downstream upstream mismappers(1) CTCCAGGTCTCGTCTTCATTTCTGTGTCCTTTGTTCTTAGAGGtCCAGCCTGTGTGGCCCTGTGACCCGCAGATATTGGGAGATACACAGCTAAGACTCCAGGACCCCCTGGAAGCCTAGAAATG|GTGTTGGTGTCTCTAAGCCAGATTTAATCACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACACAAGATGGTAGCCAAGCCCCCAG___TTGTGTGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGG M|vlvslsqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger protein 429 2 GBM other missense FALSE NA NA NA NA NA NA NA NA NA 7356 ZNF429::ZNF723 ENSG00000197013.11::ENSG00000268696.3 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1276 TRUE 497 ZNF429 ENSG00000197013.11 protein_coding + + chr19:21496682-21556270:+ chr19:21506080:+ chr19:21679484-21739072:+ chr19:21688882:+ ZNF723 ENSG00000268696.3 protein_coding + + chr19:22832291-22858667:+ chr19:22849198:+ chr19:23015093-23041469:+ chr19:23032000:+ chr19:21514937 chr19:22848592 NA NA chr19:21697739 chr19:23031394 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%) 0 1 0 15 6 ENST00000596126.1 ENST00000600766.3 downstream upstream none CTGACGTGTAGCCCTGTCTGGGGAGCTCTGCACGCGCAATTCCGCAGTCTCTCCCAGATTGTGCAAGAACCATGGGAGGGGCGTCAG|GTGTTGGTGTCTCT...CCCAG___TTGTGTGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGGGCATAAAAGATTCTTTCCAAAAAGTAATACTGAGAAGCTATGGAAAATATGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger protein 429 2 GBM other missense FALSE NA NA NA NA NA NA NA NA NA 7360 RHBDD1::IRS1 ENSG00000144468.17::ENSG00000169047.6 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RHBDD1 ENSG00000144468.17 protein_coding + + chr2:226835581-226999215:+ chr2:226867318:+ chr2:227700297-227863931:+ chr2:227732034:+ IRS1 ENSG00000169047.6 protein_coding - - chr2:226731312-226799820:- chr2:226736250:- chr2:227596028-227664536:- chr2:227600966:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion high none Rhomboid_family(88%)| Rhomboid(5%)| 1 2 1 130 258 ENST00000341329.7 ENST00000305123.6 downstream downstream none TGTAGGTTTCTCAG___GAGTTTTGTTTGCTTTGAAAGTTCTTAACAACCATTATTGCCCTGGAGGCTTTGTCAACATTTTGGGCTTTCCTGTACCGAACAGATTTGCTTGTTGGGTCGAACTTGTGGCTATTCATTTATTCTCACCAGG|AATGAAGACCTAAATGACCTCAGCAAATCCTCTTCTAACTCATGGGTACCCAGACTCTAAATATTTCATGATTCACAACTAGGACCTCATATCTTCCTCATCAGTAGATGGTACGATGCATCCATTTCAGTTTGTTTACTTTATCCAATCCTCAGGATTTCATTGACTGAACTGCACGTTCTATATTGTGCCAAGCGAA VGFSGVLFALKVLNNHYCPGGFVNILGFPVPNRFACWVELVAIHLFSPg|mkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7361 CEP152::SHC4 ENSG00000103995.14::ENSG00000185634.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CEP152 ENSG00000103995.14 protein_coding - - chr15:48712928-48811146:- chr15:48760135:- chr15:49005125-49103343:- chr15:49052332:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48924949:- chr15:49115938-49256116:- chr15:49217146:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Phosphotyrosine_interaction_domain_(PTB/PID)(97%),SH2_domain(100%) |PID(64%),SH2(100%) 1 1 1 79 2 ENST00000380950.7 ENST00000332408.9 upstream downstream none CAAAACTTAGAACAAGAGAAGGACATAGCCATCAAGGGGGCTATGAAGAAACTCGAAATTGAATTGGAACTCAAACATTGTGAAAATATTACCAAACAGGT...GGGAGAACTACCAGAGCTGGCAGAGTATCAAGCACTTGTGAAGGCAGAACAGAAAAAGTGGGAAGAACAGCATGAGGTCTCTGTGAACAAAAGG|TACATGGGCTGTGTTGAAGTGCTGCAATCAATGAGATCACTGGATTTTGGAATGAGAACCCAAGTTACAAG___GGAAGCAATAAGTCGCCTGTGTGAAGCTGaCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAG GELPELAEYQALVKAEQKKWEEQHEVSVNKR|YMGCVEVLQSMRSLDFGMRTQVTREAISRLCEAdPGANGAIKKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7364 UBE2V2::PRKAA1 ENSG00000169139.12::ENSG00000132356.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE TRUE 736 TRUE 1277 TRUE 498 UBE2V2 ENSG00000169139.12 protein_coding + + chr8:48008415-48064708:+ chr8:48008470:+ chr8:48920975-48977268:+ chr8:48921030:+ PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40769503:- chr5:40759491-40798476:- chr5:40769605:- chr8:48008694,chr8:48008695 chr5:40769959,chr5:40769958 NA NA chr8:48921254,chr8:48921255 chr5:40770061,chr5:40770060 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Adenylate_sensor_of_SNF1-like_protein_kinase(100%),Protein_kinase_domain(41%) |ABC1(0%),AdenylateSensor(100%),PK_Tyr_Ser-Thr(12%),Pkinase(13%) 0 53 0 415 873 ENST00000523111.7 ENST00000397128.7 downstream downstream duplicates(4) GCGTCGGGCTGCAGGAGAAGATGGCGGTCTCCACAG|GTCTTTCAAACATGATGTCAGATGGTGAATTTTTAAGAACAAGTTGTGGCTCACCCAACTATGCTGCACCAGAAGTAATTTCAGGAAG___ATTGTATGCAGGCCCAGAGGTAGATATATGGAGCAGTGGGGTTATTCTCTATGCTTTATTATGTGGAACCCTTCCATTTGATGATGACCATGTGCCAACTCTTTTTAAGAAGATATGTGATGGGATCTTCTATACCCCTCAATATTTAAATCCTTCTGTGATTAG MAVST|gLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7365 UBE2V2::PRKAA1 ENSG00000169139.12::ENSG00000132356.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1277 TRUE 498 UBE2V2 ENSG00000169139.12 protein_coding + + chr8:48008415-48064708:+ chr8:48008470:+ chr8:48920975-48977268:+ chr8:48921030:+ PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40767690:- chr5:40759491-40798476:- chr5:40767792:- chr8:48008694,chr8:48008695 chr5:40769959,chr5:40769958 NA NA chr8:48921254,chr8:48921255 chr5:40770061,chr5:40770060 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation medium none |Adenylate_sensor_of_SNF1-like_protein_kinase(100%),Protein_kinase_domain(30%) |AdenylateSensor(100%),PK_Tyr_Ser-Thr(7%),Pkinase(7%) 0 16 0 415 981 ENST00000521346.5 ENST00000397128.7 downstream downstream duplicates(1) GCGGCTGCGTCGGGCTGCAGGAGAAGATGGCGGTCTCCACAG|ATTGTATGCAGGCCCAGAGGTAGATATATGGAGCAGTGGGGTTATTCTCTATGCTTTATTATGTGGAACCCTTCCATTTGATGATGACCATGTGCCAACTCTTTTTAAGAAGATATGTGATGGGATCTTCTATACCCCTCAATATTTAAATCCTTCTGTGATTAGCCTTTTGAAACATATGCTGCAGGTGGATCCCATGAAGAGGGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7366 UBE2V2::PRKAA1 ENSG00000169139.12::ENSG00000132356.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1277 TRUE 498 UBE2V2 ENSG00000169139.12 protein_coding + + chr8:48008415-48064708:+ chr8:48008571:+ chr8:48920975-48977268:+ chr8:48921131:+ PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40769503:- chr5:40759491-40798476:- chr5:40769605:- chr8:48008694,chr8:48008695 chr5:40769959,chr5:40769958 NA NA chr8:48921254,chr8:48921255 chr5:40770061,chr5:40770060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Adenylate_sensor_of_SNF1-like_protein_kinase(100%),Protein_kinase_domain(41%) |ABC1(0%),AdenylateSensor(100%),PK_Tyr_Ser-Thr(12%),Pkinase(13%) 0 1 0 12 873 ENST00000517630.5 ENST00000397128.7 downstream downstream none CGGCTCTGCCCCTCCGTCTGCTGCTGGCGCCCGAGCGCTGACCGTGCGGGAGAAGCCCGA|GTCTTTCAAACATGATGTCAGATGGTGAATTTTTAAGAACAAGTTGTGGCTCACCCAACTATGCTGCACCAGAAGTAATTTCAGGAAG___ATTGTATGCAGGCCCAGAGGTAGATATATGGAGCAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7367 ENSG00000256100::NAA40 ENSG00000256100.1::ENSG00000110583.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1278 TRUE 499 ENSG00000256100 ENSG00000256100.1 lncRNA + + chr11:63974620-63988346:+ chr11:63974794:+ chr11:63742092-63755818:+ chr11:63742266:+ NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63952238:+ chr11:63706431-63724791:+ chr11:63719710:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Acetyltransferase_(GNAT)_family(100%) |Acetyltransf_1(100%) 10 23 18 6315 269 ENST00000535431.1 ENST00000377793.9 downstream upstream duplicates(1),mismatches(7) GGCTACGGCTGACCGTTTTTTGTGGTGTACTCCGTGCCATCATGTCCGTCCTGACGCCGCTGCTGCTGCGGGGCTTGACAGGCTCGGCCCGGCGGCTCCCAGTGCCGCGCGCCAAGATCCATTCGTTGCCGCCGGAGGGGAAGCTTGGGATCATG|GTTGAATGTCTCCATTGAATGTAAGCGAGTGTCTGGACTGGAGCCAGCCACCGTGGATTGGGCCTTCGACCTGACCAAAACGAATATGCAAACCAT___GTATGAGCAGAGCGAGTGGGGCTGGAAGGACCGAGAGAAACGGGAGGAAATGACAGATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7368 ENSG00000256100::NAA40 ENSG00000256100.1::ENSG00000110583.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1278 TRUE 499 ENSG00000256100 ENSG00000256100.1 lncRNA + + chr11:63974620-63988346:+ chr11:63974794:+ chr11:63742092-63755818:+ chr11:63742266:+ NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63952407:+ chr11:63706431-63724791:+ chr11:63719879:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Acetyltransferase_(GNAT)_family(100%) |Acetyltransf_1(100%) 2 1 10 6315 369 ENST00000535431.1 ENST00000377793.9 downstream upstream none AGCGCAGCCATTTTGGCTTCCTGACCTTGGGCTACGGCTGACCGTTTTTTGTGGTGTACTCCGTGCCATCATGTCCGTCCTGACGCCGCTGCTGCTGCGGGGCTTGACAGGCTCGGCCCGGCGGCTCCCAGTGCCGCGCGCCAAGATCCATTCGTTGCCGCCGGAGGGGAAGCTTGGGATCATG|GTATGAGCAGAGCGAGTGGGGCTGGAAGGACCGAGAGAAACGGGAGGAAATGACAGATGACCGAGCCTGGTACCTCATCGCGTGGGAAAACAGCTCCGTCCCTGTTGCCTTTTCTCACTTCCGGTTTGACGTGGAGTGTGGGGATGAAGTCCTGTACTG___CTATGAAGTGCAGTTGGAAAGCAAGGTGCGGCGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7374 LAMB1::LAMB4 ENSG00000091136.15::ENSG00000091128.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107929064:- chr7:107564244-107643658:- chr7:107569509:- LAMB4 ENSG00000091128.13 protein_coding - - chr7:108023548-108130361:- chr7:108068159:- chr7:107663993-107770806:- chr7:107708604:- chr7:107928171,chr7:107928174 chr7:108069236,chr7:108069236 NA NA chr7:107568616,chr7:107568619 chr7:107709681,chr7:107709681 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Laminin_EGF_domain(100%),Laminin_N-terminal_(Domain_VI)(100%)|Laminin_EGF_domain(57%) Laminin_EGF(100%),Laminin_N(100%)|Laminin_EGF(63%) 7 16 4 2863 23 ENST00000677793.1 ENST00000388781.8 upstream downstream duplicates(1) GTTAGAAGAAGCTAAAAGAGCAAG___CAAAAGTGCAACAGATGTTAAAGTCACTGCAGATATGGTAAAGGAAGCTCTGGAAGAAGCAGAAAAGGCCCAGGTCGCAGCAGAGAAGGCAATTAAACAAGCAGATGAAGACATTCAAGGAACCCAGAACCTGTTAACTTCG|CCTGCAAGTGTCACCCCCAGGGCTCAGTCGGATCCAGCTGCAGCCGACTTGGAGGCCAGTGCCAGTGTAAACCTCTTGTGGTCGGGCGCTGCTGTGACAGGTGCTCAACTGGAAGCTATGATTTGGGGCATCACGGCTGTCACC___CATGTCACTGCCATCCTCAAGGATCAAAGGACACTGTATGTGACCAAGT LEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQNLLTS|pasvtpraqsdpaaadleasasvnllwsgaavtgaqleamiwgitavthvtailkdqrtlyvtk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7384 HSF1::ARHGAP39 ENSG00000185122.11::ENSG00000147799.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HSF1 ENSG00000185122.11 protein_coding + + chr8:144291591-144314720:+ chr8:144291874:+ chr8:145515273-145538383:+ chr8:145515556:+ ARHGAP39 ENSG00000147799.12 protein_coding - + chr8:144529179-144685846:- chr8:144617340:+ chr8:145754563-145911231:- chr8:145842725:+ chr8:144292018,chr8:144292016,chr8:144292019 chr8:144602573,chr8:144602573,chr8:144602571 NA NA chr8:145515700,chr8:145515698,chr8:145515701 chr8:145827957,chr8:145827957,chr8:145827955 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none HSF-type_DNA-binding(21%)| HSF_DNA-bind(0%)| 8 7 4 978 40 ENST00000528838.6 unknown downstream upstream duplicates(3),mismatches(2),multimappers(1) CCGGGGCTGTGTGTGCGCAGCGGGCGGCGGCGCGGCCCGGAAGGCTGGCGCGGCGACGGCGTTAGCCCGGCCCTCGGCCCCTCTTTGCGGCCGCTCCCTCCGCCTATTCCCTCCTTGCTCGAGATGGATCTGCCCGTGGGCCCCGGCGCGGCGGGGCCCAGCAACGTCCCGGCCTTCCTGACCAAGCTGTGGACCCTCGTGAGCGACCCGGACACCGACGCGCTCATCTGCTGGAGCCCG|GCGGGACAAGCGGCGCAGCACCAGCAAGAGCCAGGAGACCTGAGCACCCAGCACCGCAAACCAGGAGACCTGAGCACCCAGCGCCACAAACCAGGAGACCTGAGCACCCAGCGCCGCA MDLPVGPGAAGPSNVPAFLTKLWTLVSDPDTDALICWSP|agqaaqhqqepgdlstqhrkpgdlstqrhkpgdlstqrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7385 SNX8::MAD1L1 ENSG00000106266.11::ENSG00000002822.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE TRUE 738 TRUE 1283 FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2002121:- chr7:1855429-2272878:- chr7:2041756:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Mitotic_checkpoint_protein(39%) |MAD(44%) 1 13 2 273 187 ENST00000222990.8 ENST00000406869.5 upstream downstream duplicates(1),mismatches(1) CCCGCTGCCCGCGGCTGCAGTCGGGGCGGCAGCTGAGGCGGAGGCTGACGAGGAGGCGGATCCCCCGGCGTCAG|GCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAAACAAAGAGCAGACATG___CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAG___GTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGCTCTGCAG___GGTGACTATGACCAGAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGACCACAGC PLPAAAVGAAAEAEADEEADPPAS|gsavagpggagrpetksrhagdgaedaevsvqlcrtelpvlqgggghaqvegrgagrraesagggkedaggtagaassag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4655 chr7:1844180-1844253:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder,Esophagus BLADDER,OESOPHAGUS no_match 2278100,2314328 FALSE,TRUE 2014642,2014642 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7387 SNX8::ENSG00000286192 ENSG00000106266.11::ENSG00000286192.1 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1284 FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2002121:- chr7:1855440-2281850:- chr7:2041756:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none |MAD(44%) 1 13 2 273 187 ENST00000222990.8 ENST00000651235.1 upstream downstream duplicates(1),mismatches(1) CCCGCTGCCCGCGGCTGCAGTCGGGGCGGCAGCTGAGGCGGAGGCTGACGAGGAGGCGGATCCCCCGGCGTCAG|GCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAAACAAAGAGCAGACATG___CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAG___GTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGCTCTGCAG___GGTGACTATGACCAGAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGACCACAGC PLPAAAVGAAAEAEADEEADPPAS|gsavagpggagrpetksrhagdgaedaevsvqlcrtelpvlqgggghaqvegrgagrraesagggkedaggtagaassag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7396 CAPZB::HIVEP3 ENSG00000077549.19::ENSG00000127124.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19419661:- chr1:19665269-19812033:- chr1:19746155:- HIVEP3 ENSG00000127124.16 protein_coding - + chr1:41506365-42035925:- chr1:41591497:+ chr1:41972036-42501596:- chr1:42057168:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none F-actin_capping_protein__beta_subunit(10%)| F_actin_cap_B(0%)| 1 1 4 6421 3 ENST00000264202.8 unknown upstream upstream none CCTGGGCACCCGGGGAAGTGGAAGCGCCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATG___AGTGATCAGCAGCTGGACTGTGCCTTGGACCTAATGAGGCGCCTGCCTCCCCAGCAAATCGAGAAAAACCTCAGCGACCTGATCGACCTG|ATTGAAGGCTTCATACCAACCCAGGGCACAAGCTAGAACTGATAATCATGGATGAAAATCATCACGATCCTGGCACACAGCTTTCCAGGCCACCAGATCCATCTTCCTGACTCCATGaAAGCCACAC MSDQQLDCALDLMRRLPPQQIEKNLSDLIDL|iegfiptqgts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7398 PSMD11::RHBDL3 ENSG00000108671.11::ENSG00000141314.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1287 TRUE 500 PSMD11 ENSG00000108671.11 protein_coding + + chr17:32444379-32483319:+ chr17:32447046:+ chr17:30771397-30810337:+ chr17:30774064:+ RHBDL3 ENSG00000141314.13 protein_coding + + chr17:32265832-32324659:+ chr17:32284659:+ chr17:30592851-30651678:+ chr17:30611678:+ chr17:32454427 chr17:32284191 NA NA chr17:30781445 chr17:30611210 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none 26S_proteasome_regulatory_subunit_RPN6_N-terminal_domain(45%)|EF-hand_domain_pair(90%),Rhomboid_family(100%) RPN6_N(12%)|EF-hand_7(19%),EF-hand_8(100%),Rhomboid(100%) 1 0 4 645 9 ENST00000649012.1 ENST00000269051.9 downstream upstream none CGGCGGCGGCGGTGGTGGAGTTCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCTCCACTCCATCG___TGAAGCGTGACATTCAGGAAAACGATGAAGAGGCAGTGCAAGTCAAAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGACAAGCTGCAG|TTTGACCCTGGGAACACA...CTCCAAGCTGGACCCGCACAAAAGGGAGGTCCTCCTGGCTCTTGCCGACAGCCACGCGGATGGGCAGATCGGCTACCAGGATTTTGTCAGCCTA___ATGAGCAACAAGCGTTCCAAC AAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAA|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7399 PSMD11::RHBDL3 ENSG00000108671.11::ENSG00000141314.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1287 TRUE 500 PSMD11 ENSG00000108671.11 protein_coding + + chr17:32444379-32483319:+ chr17:32447046:+ chr17:30771397-30810337:+ chr17:30774064:+ RHBDL3 ENSG00000141314.13 protein_coding + + chr17:32265832-32324659:+ chr17:32288792:+ chr17:30592851-30651678:+ chr17:30615811:+ chr17:32454427 chr17:32284191 NA NA chr17:30781445 chr17:30611210 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none 26S_proteasome_regulatory_subunit_RPN6_N-terminal_domain(45%)|EF-hand_domain_pair(1%),Rhomboid_family(100%) RPN6_N(12%)|EF-hand_7(0%),EF-hand_8(0%),Rhomboid(100%) 1 0 1 645 14 ENST00000649012.1 ENST00000269051.9 downstream upstream none CTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCTCCACTCCATCG___TGAAGCGTGACATTCAGGAAAACGATGAAGAGGCAGTGCAAGTCAAAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGACAAGCTGCAG|ATGAGCAACAAGCGTTCCAACAGCTTCCGC...GAGgCCCTGCCCCGGGAAATTGACCGCAAGTGGTACTATGACAGCTACACCTGCTGCCCCCCACCCTGGTTCATGATCACAGTCACGCTGCTGGAGGCAAG LLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAA|deqqafqqlp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7400 PSMD11::RHBDL3 ENSG00000108671.11::ENSG00000141314.13 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1287 TRUE 500 PSMD11 ENSG00000108671.11 protein_coding + + chr17:32444379-32483319:+ chr17:32447046:+ chr17:30771397-30810337:+ chr17:30774064:+ RHBDL3 ENSG00000141314.13 protein_coding + + chr17:32265832-32324659:+ chr17:32294294:+ chr17:30592851-30651678:+ chr17:30621313:+ chr17:32454427 chr17:32284191 NA NA chr17:30781445 chr17:30611210 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none 26S_proteasome_regulatory_subunit_RPN6_N-terminal_domain(45%)|Rhomboid_family(100%) RPN6_N(12%)|Rhomboid(100%) 0 2 0 645 18 ENST00000649012.1 ENST00000269051.9 downstream upstream none GTCAAAGAGCAGAGCATCCTGGAACTGGGATCTCTCCTGGCAAAGACTGGACAAGCTGCAG|GTTGCCTTTTTCCTCTACAATGGGGTGTCACTAGGTCAATTTGTACTGCAGGTAACTCAaCCACGTTACTTGAAGAACTCCCTGGTTTACCACCCACAGCTGCGAGCACAGGTTTGGCGCTACCTGACATACATCTTCATGCATGCAGG___GATAGAACACCTG VKEQSILELGSLLAKTGQAA|gclfplqwgvtrsictagnsttlleelpglpptaastglalpdihlhacrdrtp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7406 NCOA1::MRPL33 ENSG00000084676.16::ENSG00000243147.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1289 TRUE 501 NCOA1 ENSG00000084676.16 protein_coding + + chr2:24491254-24770702:+ chr2:24491602:+ chr2:24714123-24993571:+ chr2:24714471:+ MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27894533:+ chr2:27994584-28210954:+ chr2:28117400:+ chr2:24569298,chr2:24569334 chr2:27780532,chr2:27780532 NA NA chr2:24792167,chr2:24792203 chr2:28003399,chr2:28003399 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none none 0 4 0 4 247 ENST00000348332.8 ENST00000448427.1 downstream upstream none GCCGGGGCGGCGCCGCCGCCACGGTCGCGGACGAGTGCGGCGCCGGTGAGCGGGGCCCAGAGGCGGCGGCGGCAG|TGGTGATTTACAAGTCAAGTTAAAATGTCCCCAGAAGTGGCCTTGAACCGAATATCTCCAATGCTCTCCCCTTTCATATCTAGCGTGGTCCGGAATGGAAAAGTGGGACTGGATGCTACAAACTGTTTGAGGATAACTGACTTAAAATCTGG___CTGCACAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 1 1 alveolar rhabdomyosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7407 NCOA1::MRPL33 ENSG00000084676.16::ENSG00000243147.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1289 TRUE 501 NCOA1 ENSG00000084676.16 protein_coding + + chr2:24491254-24770702:+ chr2:24491602:+ chr2:24714123-24993571:+ chr2:24714471:+ MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27929832:+ chr2:27994584-28210954:+ chr2:28152699:+ chr2:24569298,chr2:24569334 chr2:27780532,chr2:27780532 NA NA chr2:24792167,chr2:24792203 chr2:28003399,chr2:28003399 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site deletion low none none none 0 1 0 4 278 ENST00000348332.8 ENST00000448427.1 downstream upstream none CGGGGCGGCGCCGCCGCCACGGTCGCGGACGAGTGCGGCGCCGGTGAGCGGGGCCCAGAGGCGGCGGCGGCAG|CTGCACATCATTGACTCCTGGGCCCAACTGTGACCGATTTAAACTGCACATACCATATGCTGGAGAGACATTAAAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 1 1 alveolar rhabdomyosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7413 PAWR::LNCTSI ENSG00000177425.11::ENSG00000230479.1 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- LNCTSI ENSG00000230479.1 lncRNA + + chr21:36430360-36481070:+ chr21:36480231:+ chr21:37802658-37853368:+ chr21:37852529:+ chr12:79644435 chr21:36470490 NA NA chr12:80038215 chr21:37842788 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 3 0 601 14 ENST00000328827.9 ENST00000429588.1 upstream upstream none GCGTGGTCAACATCCCTGCCGCAGAG|CTGCAGCTGTGGGTGATTCGGATGGTCTGTTGGTGGAATGTGGAGCTGGACGGGTCAAGGAGCACAGTGTGGAAAGAGGGACAATTTGCTACAAGTTGGAGATAAGAGACATGGCATACTGTGAAACCAGTGCTGACGGAAGAAGGTGACTTTCTTGGAAGGTCAAGACACTTGCTTGACAGCGATGTCCAGG VVNIPAAE|lqlwvirmvcwwnveldgsrstvwkegqfatswr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7418 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' medium none none none 1 2 0 483 94 ENST00000506640.3 unknown upstream downstream mismatches(1) GATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGG...CCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7419 TSBP1-AS1::GRIK2 ENSG00000225914.5::ENSG00000164418.22 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TSBP1-AS1 ENSG00000225914.5 lncRNA + + chr6:32254640-32407763:+ chr6:32255414:+ chr6:32222417-32375540:+ chr6:32223191:+ GRIK2 ENSG00000164418.22 protein_coding + - chr6:100962701-102081622:+ chr6:101215044:- chr6:101410577-102529497:+ chr6:101662920:- chr6:32285947,chr6:32285948 chr6:101230814,chr6:101230813 NA NA chr6:32253724,chr6:32253725 chr6:101678690,chr6:101678689 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none none 0 2 0 2 18 ENST00000645134.1 unknown downstream downstream duplicates(1) GAAGAAAGCGATTTCCTCCGCCTCTTCCAAAGCG|ATGCAAGAACCCACCTTCCAGTACCATGCTGTTTTGGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAGTAATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGAGAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7421 STK24::DOCK9 ENSG00000102572.15::ENSG00000088387.22 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98576745:- chr13:99097439-99230194:- chr13:99228999:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98810291:- chr13:99445683-99738879:- chr13:99462545:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |DHR-2__Lobe_A(63%) |DHR-2(38%) 0 1 1 243 108 ENST00000539966.6 ENST00000652315.1 upstream downstream none CGCGCGGCCCGCGGGCCTCGCCGCCCCGCGCGGATCGTCGCGGCCCGGCCGTCCCGTCCCAGGAAGTGGCCGTCCTGAcCGCCATGGCTCACTCCCCGGTGCAGTCGGGCCTGCCCGGCATGCAG|GATGTGCTGATGGAGCTCCTTGAGCAGTGCGCAGATGGACTCTGGAAAGCCGAGCGCTACGAGCTCATCGCCGACATCTACAAACTTATCATCCCCATTTATGAGAAGCGGAGGGATTTTGAG___AGGCTGGCCCATCTGTATGACACGCTGCACCGGGCCTACAGCAAAGTGACCGAGGTCATGCACTCGGGCCGCAGGCTTCTGGGG MAHSPVQSGLPGMQ|DVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA TRUE Stomach,Liver,Breast exact TRUE Liver hepatocellular carcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma LIVER,STOMACH,STOMACH exact 99228999,99228999,99171497|99171497 TRUE,TRUE,FALSE|FALSE 99462545,99449507,99532926|99520631 TRUE,FALSE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7430 BLTP3B::ANKS1B ENSG00000111647.13::ENSG00000185046.21 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1294 TRUE 502 BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100142592:- chr12:100422233-100536652:- chr12:100536370:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99825389:- chr12:99120235-100378714:- chr12:100219167:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(13%)|Ankyrin_repeats_(3_copies)(84%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(0%)|Ank(100%),Ank_2(20%),Ank_3(100%),Ank_4(100%),Ank_5(100%),DUF3699(100%),PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 4 5 0 66 20 ENST00000279907.12 ENST00000547776.6 upstream downstream mismatches(2) GTCGTGAGCGATCAGCGCCTCTCCGCCGGCCGGGCTAGCCGGGACAGAGAGGAGACGGCCACGAAGAGAGGAGGCAGTGAGCAACAGGACGAGACCGCGGCGTCTCCAGCCTCGGTACCATGGCCGGGATCATCAAGAAACAAATCTTGAAGCACCTCTCCAG|CATCTGGCGAGGCCCCAATGTGAACTGCACAGACAGTTCGGGTTACACTGCTTTACACCACGCAGCCTTAAATGGACATAA___GGACATAGTTCTCAAACTACTTCAGTATGAGGCATCAACAAATGTAGCAGAC MAGIIKKQILKHLSs|IWRGPNVNCTDSSGYTALHHAALNGHKDIVLKLLQYEASTNVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7431 BLTP3B::ANKS1B ENSG00000111647.13::ENSG00000185046.21 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1294 TRUE 502 BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100128580:- chr12:100422233-100536652:- chr12:100522358:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99825389:- chr12:99120235-100378714:- chr12:100219167:- NA NA NA NA NA NA NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(13%)|Ankyrin_repeats_(3_copies)(84%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(35%)|Ank(100%),Ank_2(20%),Ank_3(100%),Ank_4(100%),Ank_5(100%),DUF3699(100%),PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 1 0 1 5 20 ENST00000547428.1 ENST00000547776.6 upstream downstream mismatches(1) CCGGGATCATCAAGAAACAAATCTTGAAGCACCTCTCCAG___CGTTCCCTGCTGGCTGTGGTGGAGATTGGTGTGCTGTGAATTGCATAATCACCCAAATGAGTACCAGAGGAGTCTAA...CAACTGACTGCTTGCTTTCACCAGGAATAGGGACCTTTTTCTGAATTTCCTGCCCTCAG|CATCTGGCGAGGCCCCAATGTGAACTGCACAGACAGTTCGGGTTACACTGCTTTACACCACGCAGCCTTAAATGGACATAA___GGACATAGTTCTCAAACTACTTCAGTATGAGGCATCAACAAATGTAGCAGACAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7434 ZNF136::ENSG00000196826 ENSG00000196646.12::ENSG00000196826.7 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF136 ENSG00000196646.12 protein_coding + + chr19:12163064-12189871:+ chr19:12163206:+ chr19:12273879-12300686:+ chr19:12274021:+ ENSG00000196826 ENSG00000196826.7 protein_coding - + chr19:12461559-12551474:- chr19:12514994:+ chr19:12572373-12662288:- chr19:12625808:+ chr19:12185632,chr19:12185631 chr19:12498968,chr19:12498966 NA NA chr19:12296447,chr19:12296446 chr19:12609782,chr19:12609780 NA NA sense antisense unknown CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 2 1 67 5 ENST00000652580.1 unknown downstream upstream none CGCTTCGCTAGTCCCAGAGGCCCAGAGTGGCTCGCCTGGAGTCTCTGTGGCGCGGTTTCCTGTACCTGCCTTGGGATCCGGAGGGAGGAAGCTGGGACACCCGGGAGTCAGGAAATG|GGCTCTGCTTCTCAGAATCTGCACTCCTGTAGCTGTTCTGAGCAACCAGAGGCCACCTACGGAGACAACAGGCTGCCCAGAAAGCCACATGAGGAGCTCCATTTCCCTCCCTTTGCAGGCTCCAGACTGGCCTCAGGTTGGAGTCACTGGCTGCAGGCGCTGCTGCCCACTGCAGGTTCTTCACCTGCTTCTCA...___AGTTGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7451 DNM1::STXBP1 ENSG00000106976.22::ENSG00000136854.25 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1299 TRUE 503 DNM1 ENSG00000106976.22 protein_coding + + chr9:128191655-128255248:+ chr9:128191703:+ chr9:130953934-131017527:+ chr9:130953982:+ STXBP1 ENSG00000136854.25 protein_coding + + chr9:127579370-127696027:+ chr9:127651603:+ chr9:130341649-130458306:+ chr9:130413882:+ chr9:128199785 chr9:127649851 NA NA chr9:130962064 chr9:130412130 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Sec1_family(100%) |Sec1(100%) 0 2 0 3 633 ENST00000635766.1 ENST00000635950.2 downstream upstream none CCGAGCCCGCCCAGTGCACAAGTCACGCTGGGGGGCGGCTGCGGGGCGCTAGCAG|AGATTATGCATGATGTGATAAAGAAGGTCAAGAAGAAGGGGGAATGGAAG___GTGCTGGTGGTGGATCA...CGAcGGCATAACtA___TTGTGGAAGATATCAATAAGCGCAGAGAtCCGCTCCCCAGCCTGGAGGCTGTGTATCTCATCACcCCATCCGAGAAG___TCCGTCCACT...TGGCAGAGCAGATCGCGcCCCTTTGTGCCACCCTGAAGGAGTACCCGGCTGTGCGGTATtGGGGGTAAGGCAGTGCACCAGcCTGCTGGAGTGGCCgCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7452 DNM1::STXBP1 ENSG00000106976.22::ENSG00000136854.25 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1299 TRUE 503 DNM1 ENSG00000106976.22 protein_coding + + chr9:128191655-128255248:+ chr9:128191780:+ chr9:130953934-131017527:+ chr9:130954059:+ STXBP1 ENSG00000136854.25 protein_coding + + chr9:127579370-127696027:+ chr9:127651603:+ chr9:130341649-130458306:+ chr9:130413882:+ chr9:128199785 chr9:127649851 NA NA chr9:130962064 chr9:130412130 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Sec1_family(100%) |Sec1(100%) 0 1 0 26 633 ENST00000636874.1 ENST00000635950.2 downstream upstream none CTCCGCATCGCGAAGGGGAGGCTCGGAGACCAAG|AGATTATGCATGATGTGATAAAGAAGGTCAAGAAGAAGGGGGAATGGAAG___GTGCTGGTGGTGGATCA...AGGCTGTGTATCTCATCACTCCATCCGAGAAG___TCCGTCCACTCTCTCATCAGTGACTTTAAGGACCCGCCGACTGCTAAATACCGGGCTGCACACGTCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7457 VPS35L::SNTG1 ENSG00000103544.17::ENSG00000147481.17 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS35L ENSG00000103544.17 protein_coding + + chr16:19555240-19706793:+ chr16:19575122:+ chr16:19566562-19718115:+ chr16:19586444:+ SNTG1 ENSG00000147481.17 protein_coding + + chr8:49909789-50796692:+ chr8:50394212:+ chr8:50822349-51709252:+ chr8:51306772:+ chr16:19578145,chr16:19578145,chr16:19578143 chr8:50326797,chr8:50326801,chr8:50326788 NA NA chr16:19589467,chr16:19589467,chr16:19589465 chr8:51239357,chr8:51239361,chr8:51239348 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none |PDZ_domain(100%) |PDZ(100%),PDZ_6(100%) 1 0 0 191 1 ENST00000251143.9 ENST00000642720.2 downstream upstream none TTTGCAGCCACTGCTGACCCCGCAGCCTTGGCAGCTGCCATG___GACAGCTCCAGAAGGgAACGTGATAGAGATGATAACTCCGTTGTAGGATCGGATTTTGA...AATgTGTTTATGGGATCTGAAAgAG|ACGACgTCCTTTGTaGTGCCACAGCACATGGATgTCAGAACCGCCTGTGAGGAG___ACAAAGACAGGA NvFMGSEr|ddvlcsatahgcqnrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7469 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 740 TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93904588:- chr1:94350755-94375012:- chr1:94370144:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Aldo/keto_reductase_family(100%) |Aldo_ket_red(100%) 75 206 111 1263 644 ENST00000433544.1 ENST00000370238.8 upstream downstream duplicates(181),mismatches(12) AGAGGCTGGAGCGGTCAGGAGCATGCCTGGCTCCTGGTGCCTCTCTATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|CTTCATGATTGTATCCAAAAAACCTTGAATGAATGGAGTTCCCAAATCAACCCAGATTTGGTCAGG___GAGTTTCCAGATGTCTTGGAATGCACTGTATCTCATGCAGTAGAAAAGATAAATCCTGATGAAAGAGAAGAAATGAAAGTTTCTG___CAAAACTGTTCATTGTAGAATCAAACTCTTCATCATCAACTAGAAGTGCAGTTGACATGG___CCTGTTCAGTCCTTGGAGTTGCACAGCTGGATTCTGTGATCATTGCTTCACCTCCTATTGAAGATGGAGTTAATCTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7470 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93901669:- chr1:94350755-94375012:- chr1:94367225:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Aldo/keto_reductase_family(100%) |Aldo_ket_red(100%) 6 11 57 1263 822 ENST00000433544.1 ENST00000370238.8 upstream downstream duplicates(28),mismatches(4) CTGGGCAGGTAGAGGCTGGAGCGGTCAGGAGCATGCCTGGCTCCTGGTGCCTCTCTATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|GAGTTTCCAGATGTCTTGGAATGCACTGTATCTCATGCAGTAGAAAAGATAAATCCTGATGAAAGAGAAGAAATGAAAGTTTCTG___CAAAACTGTTCATTGTAGAATCAAACTCTTCATCATCAACTAGAAGTGCAGTTGACATGG___CCTGTTCAGTCCTTGGAGTTGCACAGCTGGATTCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7471 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93897898:- chr1:94350755-94375012:- chr1:94363454:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Aldo/keto_reductase_family(87%) |Aldo_ket_red(46%) 2 2 35 1263 855 ENST00000433544.1 ENST00000370238.8 upstream downstream duplicates(11),mismatches(3) CTGGGCAGGTAGAGGCTGGAGCGGTCAGGAGCATGCCTGGCTCCTGGTGCCTCTCTATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|CAAAACTGTTCATTGTAGAATCAAACTCTTCATCATCAACTAGAAGTGCAGTTGACATGG___CCTGTTCAGTCCTTGGAGTTGCACAGCTGGATTCTGTGATCATTGCTTCACCTCCTATTGAAGATGGAGTTAATCTTTCCTTGGAGCATTTACAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7472 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93845567:- chr1:94027298-94312706:- chr1:94311123:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93904588:- chr1:94350755-94375012:- chr1:94370144:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Aldo/keto_reductase_family(100%) |Aldo_ket_red(100%) 2 3 3 39 644 ENST00000370244.5 ENST00000370238.8 upstream downstream duplicates(1) GGCCGAGCGGCCTCCCCTCGGGCTGCGAGAC___GGAGACATTACCTCATCCCTCAAGATTGCTCGCTGCAAACACAACGCTGAGAAATGGCCCAAGTAAAGCGTGATCAGGGTCTTGCATTCTTGGCACATCTAGGAAGAACGTGCAAGGATGCGAATTGTGAATCGCTTCTCCAAACA|CTTCATGATTGTATCCAAAAAACCTTGAATGAATGGAGTTCCCAAATCAACCCAGATTTGGTCAGG___GAGTTTCCAGATGTCTTGGAATGCACTGTATCTCATGCAGTAGAAAAGATAAATCCTGATGAAAGAGAAGAAATGAAAGTTTCTG___CAAAACTGTTCATTGTAGAATCAAACTCTTCATCATCAACTAGAAGTGCAGTTGACATGG___CCTGTTCAGTCCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7473 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93894728:- chr1:94350755-94375012:- chr1:94360284:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Aldo/keto_reductase_family(23%) |Aldo_ket_red(1%) 0 1 3 1263 1500 ENST00000433544.1 ENST00000370238.8 upstream downstream low_entropy(1) GAAGCAAGCACACAACAAACCTCCTGGACCTGTCCGCATCACACTGTGACTCACCAGCCGCGCGCGTGCTGGGCAGGTAGAGGCTGGAGCGGTCAGGAG...ATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|GTAAAACCAAATAGTAACCAAGTTAATCTTGCCTCCTGCTGTGTGATGCCACCAGATTTGACTGCATTTGCTAAACAATTTGACATACAGCTGTTGACTCACAATGATCCAAAAG___AACTGCTTTCTGAAGCAAGTTTCCAAGAAGCTCTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7474 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1303 TRUE 504 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93845567:- chr1:94027298-94312706:- chr1:94311123:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93897898:- chr1:94350755-94375012:- chr1:94363454:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Aldo/keto_reductase_family(87%) |Aldo_ket_red(46%) 0 1 1 39 855 ENST00000370244.5 ENST00000370238.8 upstream downstream none GAGAAATGGCCCAAGTAAAGCGTGATCAGGGaCTTGCATTCTTGGCACATCTAGGAAGAACGTGCAAGGATGCGAATTGTGAATCGCTTCTCCAAACA|CAAAACTGTTCATTGTAGAATCAAACTCTTCATCATCAACTAGAAtTGCAGTTGACATGG___CCTGTTCAGTCCTTGGAGTTGCACAGCTGGATTCTGTGATCATTGCTTCACCTCCTATTGAAGATGGAGTTAATCTTTCCTTGGAGCATTTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7475 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 741 TRUE 1304 TRUE 505 CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36441500:+ chr2:36582921-36778278:+ chr2:36668643:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236363979:- chr2:237232790-237416178:- chr2:237272622:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Insulin-like_growth_factor_binding_protein(100%)|ATPase_family_associated_with_various_cellular_activities_(AAA)(100%) IGFBP(100%)|AAA(100%) 86 76 101 373 272 ENST00000280527.7 ENST00000309507.9 downstream downstream duplicates(110),low_entropy(1),mismatches(11),multimappers(2) AAGAGAAGCCAGATTGCTCCAAGGCCCGCTGTGAAGTCCAGTTCTCTCCACGTTGTCCTGAAGATTCTGTTCTGATCGAGGGTTATGCTCCTCCTGGGGAGTGCTGTCCCTTACCCAGCCGCTGCGTGTGCAACCCCGCAGGCTGTCTGCGCAAAGTCTGCCAGCCGGGAAACCTGAACATACTAGTGTCAAAAGCCTCAGGGAAGCCGGGAGAGTGCTGTGACCTCTATGAGTGCAAACCAG|GTTCTGCAGCAGTGCATGAGAAAGCTCCTTTGGTGAAATCGCTACTGTTAGCCGGGCCGTCTGGGGTAGGGAAGAAAATGCTGGTCCATGCCATCTGCACCGAAACGGGAGCCAACCTCTTCAACTTGTCCTCCTCTAACATTGCTGGGAAATACCCTGGCAAAAATGGCCTCCAAATGATGCTGCATGCAGTCTTCAAG___GTGGCTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGA EKPDCSKARCEVQFSPRCPEDSVLIEGYAPPGECCPLPSRCVCNPAGCLRKVCQPGNLNILVSKASGKPGECCDLYECKP|gSAAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7476 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1304 TRUE 505 CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36396787:+ chr2:36582921-36778278:+ chr2:36623930:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236363979:- chr2:237232790-237416178:- chr2:237272622:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Insulin-like_growth_factor_binding_protein(100%)|ATPase_family_associated_with_various_cellular_activities_(AAA)(100%) IGFBP(100%)|AAA(100%) 6 4 21 379 272 ENST00000280527.7 ENST00000309507.9 downstream downstream duplicates(13),mismappers(1),mismatches(4) GCGCCAGCCAGAGGAACGAGAGCTGCGGCGGCACCTTCGGGATTTACGGAACCTGCGACCGGGGGCTGCGTTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCCTCACCGAGTACGAAGCGGGCGTTTGCGAAG___ATGAGAACTGGACTGATGACCAACTGCTTGGTTTTAAACCATGCAATGAAAACCTTATTGCTGGCTGCAATATAATCAATGGGAAATGTGAATGTAACACCATTCGAACCTGCAGCAATCCCTTTGAGTTTCCAAGTCAGGATATGTGCCTTTCAGCTTTAAAGAGAATTGAAG|GTTCTGCAGCAGTGCATGAGAAAGCTCCTTTGGTGAAATCGCTACTGTTAGCCGGGCCGTCTGGGGTAGGGAAGAAAATGCTGGTCCATGCCATCTGCACCGAAACGGGAGCCAACCTCTTCAACTTGTCCTCCTCTAACATTGCTGGGAAATACCCTGGCAAAAATGGCCTCCAAATGATGCTGCATGCAGTCTTCAAG___GTGGCTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAACGCAGAAAAGATG___AATGAACC ASQRNESCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCEDENWTDDQLLGFKPCNENLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRIE|gSAAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIEDTEKTFYKKVPNAEKMNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7477 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1304 TRUE 505 CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36396787:+ chr2:36582921-36778278:+ chr2:36623930:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236344643:- chr2:237232790-237416178:- chr2:237253286:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Insulin-like_growth_factor_binding_protein(100%)|ATPase_family_associated_with_various_cellular_activities_(AAA)(53%) IGFBP(100%)|AAA(24%) 1 1 7 379 476 ENST00000280527.7 ENST00000309507.9 downstream downstream duplicates(2) CGAGTACGAAGCGGGCGTTTGCGAAG___ATGAGAACTGGACTGATGACCAACTGCTTGGTTTTAAACCATGCAATGAAAACCTTATTGCTGGCTGCAATATAATCAATGGGAAATGTGAATGTAACACCATTCGAACCTGCAGCAATCCCTTTGAGTTTCCAAGTCAGGATATGTGCCTTTCAGCTTTAAAGAGAATTGAAG|GTGGCTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAACGCAGAAAAGATG___AATGAACCTAAACGCCTGAAAAAACACCTTCCCCAAATCCTGAAACTCCTGAAACCAGATGACCGGATTCTGA...GATAACAGGAGGCAGCACAGAAAAGGCAAAGGACAAAGGGAAAAGGAAATAAAAGAAAGAGAAAAAGGCAAAAAAGAAAAAGTAATGCCTTTCTGAAGAAC EYEAGVCEDENWTDDQLLGFKPCNENLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRIE|ggstapalrgvd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7478 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1304 TRUE 505 CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36356623:+ chr2:36582921-36778278:+ chr2:36583766:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236344643:- chr2:237232790-237416178:- chr2:237253286:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Insulin-like_growth_factor_binding_protein(100%)|ATPase_family_associated_with_various_cellular_activities_(AAA)(53%) IGFBP(100%)|AAA(24%) 2 1 5 583 476 ENST00000280527.7 ENST00000309507.9 downstream downstream duplicates(1) CACCTCCTGGTCTCGCTGCTGGGGCTGCTGCTGCTGCTGGCGCGCTCCGGCACCCGGGCGCTGGTCTGCCTGCCCTGTGACGAGTCCAAGTGCGAGGAGCCCAGGAACTGCCCGGGGAGCATCGTGCAGGGCGTCTGCGGCTGCTGCTACACGTGCGCCAGCCAGAGGAACGAGAGCTGCGGCGGCACCTTCGGGATTTACGGAACCTGCGACCGGGGGCTGCGTTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCCTCACCGAGTACGAAGCGGGCGTTTGCGAAG|GTGGCTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAACGCAGAAAAGATG___AATGAACCTAAACGCCTGAAAAAACACCTTCCCCAAATCCTGAAACTCCTGAAACCAGATGACCGGATTCTGA HLLVSLLGLLLLLARSGTRALVCLPCDESKCEEPRNCPGSIVQGVCGCCYTCASQRNESCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCE|ggstapalrgvd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7479 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1304 TRUE 505 CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36356623:+ chr2:36582921-36778278:+ chr2:36583766:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236331597:- chr2:237232790-237416178:- chr2:237240240:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Insulin-like_growth_factor_binding_protein(100%)| IGFBP(100%)| 0 1 1 583 547 ENST00000280527.7 ENST00000309507.9 downstream downstream none CACCTCCTGGTCTCGCTGCTGGGGCTGCTGCTGCTGCTGGCGCGCTCCGGCACCCGGGCGCTGGTCTGCCTGCCCTGTGACGAGTCCAAGTGCGAGGAGCC...GCGTTGTGTCATCCGCCCCCCGCTCAATGGCGACTCCCTCACCGAGTACGAAGCGGGCGTTTGCGAAG|TTCTGTGGAAGCAAATCATTGAACGCAATGGAGGAGTCCTCACCAGTGCCTTGAATGTCAGCTGCCTGGCGAAGGTCACTGACGGCTTCACCCAAGGACATATAGTCGAAGTGGTTAAAGGCGTGCTCACAGATCAGAGAATCCGGCGGCAAATTCATAAACCTCTCACTGCAG RCVIRPPLNGDSLTEYEAGVCE|vLWKQIIERNGGVLTSALNVSCLAKVTDGFTQGHIVEVVKGVLTDQRIRRQIHKPLTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7480 MBD2::LINC01917 ENSG00000134046.12::ENSG00000260433.3 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBD2 ENSG00000134046.12 protein_coding - - chr18:54151606-54224669:- chr18:54224018:- chr18:51677976-51751039:- chr18:51750388:- LINC01917 ENSG00000260433.3 lncRNA - - chr18:53480825-53581107:- chr18:53481073:- chr18:51007195-51107477:- chr18:51007443:- chr18:54221835,chr18:54221837 chr18:53489812,chr18:53489811 NA NA chr18:51748205,chr18:51748207 chr18:51016182,chr18:51016181 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Methyl-CpG_binding_domain(49%)| MBD(0%)| 30 75 23 136 264 ENST00000256429.8 ENST00000650275.1 upstream downstream duplicates(58),mismatches(4) CGCGGGGCCGGGGCCCAGGGGACCCCGGGCCACGGAGAGCGGGAAGAGGATGGATTGCCCGGCCCTCCCCCCCGGATGGAAGAAGGAGGAAGTGATCCGAAAATCTGGGCTAAGTGCTGGCAAGAGCGATGTCTACTACTTCAG|ATCACTCATGCTGGGGAAAGCCAGGTGTCATGTCTTGGGGAATCCAGGTGTTATGTCTTAAGGACAGGCTGGCAGACCTGTGCATACGCCCATGTAGCGAGAAACTAGACCCTCAGCTCAAGACACTGAAAGAAACCTCATGAAACAACTTGAAGCTCTGACCCTGAACCACCTAGCTAAACTGCTCTTAGATACCTGA AGPGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFr|slmlgkarchvlgnpgvms* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7483 MBD2::DCC ENSG00000134046.12::ENSG00000187323.13 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBD2 ENSG00000134046.12 protein_coding - - chr18:54151606-54224669:- chr18:54224018:- chr18:51677976-51751039:- chr18:51750388:- DCC ENSG00000187323.13 protein_coding + - chr18:52340197-53535899:+ chr18:53488008:- chr18:49866567-51062269:+ chr18:51014378:- chr18:54221835,chr18:54221837 chr18:53489812,chr18:53489811 NA NA chr18:51748205,chr18:51748207 chr18:51016182,chr18:51016181 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Methyl-CpG_binding_domain(49%)| MBD(0%)| 14 59 19 136 126 ENST00000256429.8 unknown upstream downstream duplicates(35),mismatches(1) GCCGGTCCCTTTCCCGTCGGGGAGCGCGGGGCCGGGGCCCAGGGGACCCCGGGCCACGGAGAGCGGGAAGAGGATGGATTGCCCGGCCCTCCCCCCCGGATGGAAGAAGGAGGAAGTGATCCGAAAATCTGGGCTAAGTGCTGGCAAGAGCGATGTCTACTACTTCAG|AGAGCTTCATTTTAGAAGTGAAGAAGGCACTTGTGGGCTCTCAATTCTTTGATTGGAATTCCATTTCCAGTTGTCTTGGGATTTGAAAATTTTGGTTATTAGACTTTCTACATCTTTCCTATTTAATTCCCTTCAATGCAGTTTGGGCAACTATTTTTCCTCGAGTTTTTGCACACAACTCTATTCTGTAGATATTATGTGCAGTGAGAAAAGAGA PVPFPSGSAGPGPRGPRATESGKRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFr|elhfrseegtcglsil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7486 DPYD::LINC01776 ENSG00000188641.14::ENSG00000226053.1 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- LINC01776 ENSG00000226053.1 lncRNA + - chr1:98210747-98272658:+ chr1:98218346:- chr1:98676303-98738214:+ chr1:98683902:- chr1:97901260,chr1:97901263 chr1:98228006,chr1:98228006 NA NA chr1:98366816,chr1:98366819 chr1:98693562,chr1:98693562 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 6 13 5 876 42 ENST00000370192.8 unknown upstream downstream duplicates(15),mismatches(1) GTCACTTGGCTCTCTGGCTGGAGCTTGAGGACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|GAAATCACTATATGAAACAGTTCAATGTCACAACAGGAGCATTGCTGCTTTTGATGGGGATAATACTAG___TACTGCTTTATTTATACCGTCGACTGAGGTCTGCAGCTATGGTTGCCCACCACTTTAGATAGACAACGCATCTTGTAAACAG MAPVLSKDSADIE|eiti* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7488 SLC20A1::POLR1B ENSG00000144136.11::ENSG00000125630.16 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 743 TRUE 1307 TRUE 506 SLC20A1 ENSG00000144136.11 protein_coding + + chr2:112645939-112663825:+ chr2:112657241:+ chr2:113403516-113421402:+ chr2:113414818:+ POLR1B ENSG00000125630.16 protein_coding + + chr2:112541915-112579818:+ chr2:112572562:+ chr2:113299492-113337395:+ chr2:113330139:+ chr2:112658993 chr2:112570662 NA NA chr2:113416570 chr2:113328239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Phosphate_transporter_family(35%)|RNA_polymerase_Rpb2__domain_6(93%),RNA_polymerase_Rpb2__domain_7(100%) PHO4(64%)|RNA_pol_Rpb2_6(39%),RNA_pol_Rpb2_7(100%) 3 3 9 1231 160 ENST00000272542.8 ENST00000263331.10 downstream upstream duplicates(4) TCCAGTTCCTAATGGTTTGCGAGCTTTGCCAGTTTTCTATGCCTGCACAGTTGGAATAAACCTCTTTTCCATCATGTATACTGGAGCACCGT___TGCTGGGCTTTGACAAACTTCCTCTGTGGGGTACCATCCTCATCTCGGTGGGATGTGCAGTTTTCTGTGCCCTTATCGTCTGGTTCTTTGTATGTCCCAGGATGAAGAGAAAAATTGAAC|GTAAGCAAACTATGGGCTTTCCACTTCTCACTTATCAAGACCGATCGGATAACAAACTGTATCGTCTTCAGACTCCTCAGAGTCCCTTGGTGAGACCCTCCATGTATGATTATTATGACATGGATAACTATCCAATTGGGACCAATGCCATCGTTGCTGTGATTTCTTACACTGGCTATGATATGGAAGATGCCATG___ATTGTGAATAAGGCCTCTTGGGAACGAGGCTTTGCCCATGGAAGTGTC PVPNGLRALPVFYACTVGINLFSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCPRMKRKIE|rKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7489 SLC20A1::POLR1B ENSG00000144136.11::ENSG00000125630.16 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1307 TRUE 506 SLC20A1 ENSG00000144136.11 protein_coding + + chr2:112645939-112663825:+ chr2:112652798:+ chr2:113403516-113421402:+ chr2:113410375:+ POLR1B ENSG00000125630.16 protein_coding + + chr2:112541915-112579818:+ chr2:112572562:+ chr2:113299492-113337395:+ chr2:113330139:+ chr2:112658993 chr2:112570662 NA NA chr2:113416570 chr2:113328239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Phosphate_transporter_family(28%)|RNA_polymerase_Rpb2__domain_6(93%),RNA_polymerase_Rpb2__domain_7(100%) PHO4(36%)|RNA_pol_Rpb2_6(39%),RNA_pol_Rpb2_7(100%) 3 1 4 588 160 ENST00000272542.8 ENST00000263331.10 downstream upstream duplicates(3),mismatches(1) CTGATAAAAATTG___TGATGTCTTGGTTCGTGTCCCCACTGCTTTCTGGAATTATGTCTGGAATTTTATTCTTCCTGGTTCGTGCATTCATCCTCCATAAG___GCAGATCCAGTTCCTAATGGTTTGCGAGCTTTGCCAGTTTTCTATGCCTGCACAGTTGGAATAAACCTCTTTTCCATCATGTATACTGGAGCACCGT|GTAAGCAAACTATGGGCTTTCCACTTCTCACTTATCAAGACCGATCGGATAACAAACTGTATCGTCTTCA...TCCTCAGAGTCCCTTGGTGAGACCCTCCATGTATGATTATTATGACATGGATAACTATCCAATTGGGACCAATGCCATCGTTGCTGTGATTTCTTACACTGGC...GATGCCATG___ATTGTGAATAAGGCCTCTTGGGAACGAGGCTTTGCCCATGGAAGTGTCTACAAGTCTGAGTTCATAGACCTCTCTGAAAAAATTAAACAAGG LIKIVMSWFVSPLLSGIMSGILFFLVRAFILHKADPVPNGLRALPVFYACTVGINLFSIMYTGAP|cKQTMGFPLLTYQDRSDNKLYRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7492 CLN8::CSMD3 ENSG00000182372.10::ENSG00000164796.18 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 744 FALSE NA FALSE NA CLN8 ENSG00000182372.10 protein_coding + + chr8:1755778-1801711:+ chr8:1771597:+ chr8:1703944-1749877:+ chr8:1719763:+ CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113019179:- chr8:113235157-114449168:- chr8:114031408:- chr8:1774884,chr8:1774883 chr8:113042106,chr8:113042107 NA NA chr8:1723050,chr8:1723049 chr8:114054335,chr8:114054336 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none TLC_domain(61%)|CUB_domain(88%),Sushi_repeat_(SCR_repeat)(96%) TRAM_LAG1_CLN8(3%)|CUB(49%),Sushi(99%) 6 3 8 14 29 ENST00000636934.1 ENST00000497026.5 downstream downstream duplicates(8),mismatches(2) ACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACAGACAGCAATCATCGATACCGTGGATTTAGTGCTCCCTATCAAGGTATACTTATGGAATACCTTTGCCTCTTTTGATATGTAAAATAATTTTGGTGTACACAACTATGTTTTGTGATAGAAAAATGTCTTTAGCATTTAGAAAT TGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|viwneytttnyqqqklaqtafcyrqqssipwi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense 7493 KBTBD11-OT1::CSMD3 ENSG00000283239.1::ENSG00000164796.18 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KBTBD11-OT1 ENSG00000283239.1 protein_coding + + chr8:1763888-1958627:+ chr8:1771597:+ chr8:1712054-1906793:+ chr8:1719763:+ CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113019179:- chr8:113235157-114449168:- chr8:114031408:- chr8:1774884,chr8:1774883 chr8:113042106,chr8:113042107 NA NA chr8:1723050,chr8:1723049 chr8:114054335,chr8:114054336 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |CUB_domain(88%),Sushi_repeat_(SCR_repeat)(96%) |CUB(49%),Sushi(99%) 6 3 8 14 29 ENST00000635855.1 ENST00000497026.5 downstream downstream duplicates(8),mismatches(2) ACGGGATTCTTTTGCTTTGAAAATGTTGCAGTCCACCTGTCCAACTTGATCTTCCGGACATTTGACTTGTTTCTGGTTATCCACCATCTCTTTGCCTTTCTTGGGTTTCTTGGCTGCTTGGTCAATCTCCAAGCTGGCCACTATCTAGCTATGACCACGTTGCTCCTGGAGATGAGCACGCCCTTTACCTGCGTTTCCTGGATGCTCTTAAAG|GTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACAGACAGCAATCATCGATACCGTGGATTTAGTGCTCCCTATCAAGGTATACTTATGGAATACCTTTGCCTCTTTTGATATGTAAAATAATTTTGGTGTACACAACTATGTTTTGTGATAGAAAAATGTCTTTAGCATTTAGAAAT TGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLK|viwneytttnyqqqklaqtafcyrqqssipwi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense 7495 FAT1::SORBS2 ENSG00000083857.15::ENSG00000154556.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1309 TRUE 507 FAT1 ENSG00000083857.15 protein_coding - - chr4:186587794-186726722:- chr4:186706563:- chr4:187508948-187647876:- chr4:187627717:- SORBS2 ENSG00000154556.20 protein_coding - - chr4:185585444-185956652:- chr4:185775366:- chr4:186506598-186877806:- chr4:186696520:- chr4:186687587,chr4:186687589 chr4:185795183,chr4:185795182 NA NA chr4:187608741,chr4:187608743 chr4:186716337,chr4:186716336 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Cadherin_domain(19%)|SH3_domain(100%),Sorbin_homologous_domain(100%),Variant_SH3_domain(100%) Cadherin(2%)|SH3_1(100%),SH3_2(100%),SH3_9(100%),Sorb(100%) 4 1 4 16 8 ENST00000441802.7 ENST00000284776.11 upstream downstream duplicates(6),mismatches(1) GCAAGTGTATAATCTCACTGTGAGGGCCAAAGACAAGGGAAAGCCAGTTTCTCTGTCTTCTACTTGCTATGTTGAAGTTGAGGTGGTTGATGTGAATGAGAACCTGCACCCACCCGTGTTTTCCAGCTTTGTGGAAAAGGGGACAGTGAAAGAAGATGCACCTGTTGGTTCATTGGTAATGACGGTGTCGGCTCATGATGAGGACGCCgGAAGAGATGGGGAGATCCGATACTCCATTAGAGATGGCTCTGGCGTTGGTGTTTTCAAAATAGGTGAAGAGACAG|ACACTTGGATTGGACTTAATCTTAAACCTCTGGAGTTCAAGACCTTTTAAAAAGGGCTAAATAAACAATCTCTACATGTAAAAGGCCACTGACTCCTACTTCCTCTGTATAGAGCAACTGTTGAACTCAGCTGCCTGTAG___GGC...TTCTCTCCCAGCCTCACTCAACTCCAGCATTGTCATGCAGCACGGCACATCCCTCG___ATTCCACAGACACATATCCCCAGCATGCGCAGTCTCTGGATGGC QVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKEDAPVGSLVMTVSAHDEDAgRDGEIRYSIRDGSGVGVFKIGEET|dtwiglnlkplefktf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE FAT atypical cadherin 1 1 Yes oral squamous cell, chemorefractory CLL, head and neck, pancreatic acinar cell carcinoma pancreatic epithelial, leukaemia_lymphoma TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 7496 FAT1::SORBS2 ENSG00000083857.15::ENSG00000154556.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1309 TRUE 507 FAT1 ENSG00000083857.15 protein_coding - - chr4:186587794-186726722:- chr4:186706563:- chr4:187508948-187647876:- chr4:187627717:- SORBS2 ENSG00000154556.20 protein_coding - - chr4:185585444-185956652:- chr4:185684846:- chr4:186506598-186877806:- chr4:186606000:- chr4:186687587,chr4:186687589 chr4:185795183,chr4:185795182 NA NA chr4:187608741,chr4:187608743 chr4:186716337,chr4:186716336 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Cadherin_domain(19%)|SH3_domain(100%),Sorbin_homologous_domain(100%),Variant_SH3_domain(100%) Cadherin(2%)|SH3_1(100%),SH3_2(100%),SH3_9(100%),Sorb(100%) 0 1 1 16 4 ENST00000441802.7 ENST00000421639.5 upstream downstream duplicates(1) GTGAATGAGAACCTGCACCCACCCGTGTTTTCCAGCTTTGTGGAAAAGGGGACAGTGAAAGAAGATGCACCTGTTGGTTCATTGGTAATGACGGTGTCGGC...TCCGATACTCCATTAGAGATGGCTCTGGCGTTGGTGTTTTCAAAATAGGTGAAGAGACAG|ATAGCGGTGGGgGTGgTCGCAAAaGTtCCGCCATGTCTGTTACGCTAACATCTGTGAAGAGAGTGCAAAGTTCTCCAAACCTATTGGCTGCAG___GGCGTGATTCTCAGTCACCAGACTCAG___CAAAAGGTTT RYSIRDGSGVGVFKIGEET|dSGGggRKssAMSVTLTSVKRVQSSPNLLAAGRDSQSPDSAKG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE FAT atypical cadherin 1 1 Yes oral squamous cell, chemorefractory CLL, head and neck, pancreatic acinar cell carcinoma pancreatic epithelial, leukaemia_lymphoma TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 7497 MAT2B::HMMR ENSG00000038274.18::ENSG00000072571.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 745 TRUE 1310 TRUE 508 MAT2B ENSG00000038274.18 protein_coding + + chr5:163503114-163519558:+ chr5:163505749:+ chr5:162930120-162946564:+ chr5:162932755:+ HMMR ENSG00000072571.20 protein_coding + + chr5:163460203-163491941:+ chr5:163469641:+ chr5:162887209-162918947:+ chr5:162896647:+ chr5:163508728 chr5:163467797 NA NA chr5:162935734 chr5:162894803 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Hyaluronan_mediated_motility_receptor_C-terminal(100%),Hyaluronan_mediated_motility_receptor_N-terminal(76%) Epimerase(0%),RmlD_sub_bind(0%)|HMMR_C(100%),HMMR_N(33%) 3 3 3 255 247 ENST00000694943.1 ENST00000393915.9 downstream upstream duplicates(1),mismatches(5) CGTCTGAGCTGAGGCCCGCGTCGATCCTGGGTTGGAGGAGGTGGCGGCCGCTGAGGCTGCGGCGTGAAGACGGCGGGCATGGTGGGGCGGGAGAAAGAGCTCTCTATACACTTTGTTCCCGGGAGCTGTCGGCTGGTGGAG|ATTCGTGTTCTTCTACAGGAACGTGGTGCCCAGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGAAAAGATGGAAGCAAGGCTAAATGCTGCACTAAGGGAAAAAACATCTCTCTCTGCAAATAATGCTACACTGGAAAAACAACTTATTGAATTGACCAGGACTAATGAAC MVGREKELSIHFVPGSCRLVE|IRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7498 MAT2B::HMMR ENSG00000038274.18::ENSG00000072571.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1310 TRUE 508 MAT2B ENSG00000038274.18 protein_coding + + chr5:163503114-163519558:+ chr5:163503424:+ chr5:162930120-162946564:+ chr5:162930430:+ HMMR ENSG00000072571.20 protein_coding + + chr5:163460203-163491941:+ chr5:163469641:+ chr5:162887209-162918947:+ chr5:162896647:+ chr5:163508728 chr5:163467797 NA NA chr5:162935734 chr5:162894803 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Hyaluronan_mediated_motility_receptor_C-terminal(100%),Hyaluronan_mediated_motility_receptor_N-terminal(76%) |HMMR_C(100%),HMMR_N(33%) 3 2 1 109 247 ENST00000280969.9 ENST00000393915.9 downstream upstream duplicates(2) GTGAAGCTGCTCCTCACGTTTTGGCGTGCCTGCGCTCTCTGCAGGCAGAAGCGAACAAAGACCCAGCAAGAGAAGGCAGAGGCTAAGACCCATCCCGTATCTGCTCTCCTGAAATAATTCTGGAGTCATGCCTGAAATGCCAGAGGACATGGAGCAG|ATTCGTGTTCTTCTACAGGAACGTGGTGCCCAGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGAAAAGATGGAAGCAAGGCTAAATGCTGCACTAAGGGAAAAAACATCTCTCTCTGCAAATAATGCTACACTGGAAAAACAACTTATTGAATTGACCAGGACTAATGAAC...TGAAAATGGTAACCAGAAGAATTTGAGAATTCTAAGCTTGGAGTTGATGAAACTTAGAAACAAAAGAGAAACAAAGATGAGG___GGTATGATGGCTAAGCAAGAAGGCATGGAGATGAAGCTGCAGGTCACCCAAAGGAGTCTCGAAGAGTCTCAAGGGAAAATAGCCCAACTGGAGGGAAAACT___TGTTTCAATAGAG MPEMPEDMEQ|IRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7499 ZNF783::KIAA1549 ENSG00000204946.10::ENSG00000122778.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF783 ENSG00000204946.10 protein_coding + + chr7:149262171-149297302:+ chr7:149278527:+ chr7:148959262-148994393:+ chr7:148975618:+ KIAA1549 ENSG00000122778.10 protein_coding - - chr7:138831381-138981389:- chr7:138943393:- chr7:138516126-138666135:- chr7:138628139:- chr7:149279425,chr7:149279421 chr7:138968107,chr7:138968111 NA NA chr7:148976516,chr7:148976512 chr7:138652853,chr7:138652857 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none KRAB_box(100%),Zinc_finger_protein_(100%)|Domain_of_unknown_function_(DUF3827)(100%) KRAB(100%)|DUF3827(100%) 1 2 1 36 8 ENST00000378052.5 unknown downstream downstream duplicates(2),mismappers(2) CAAGGATGATGGGCACTG___GCCTCCCTCCGTATCCAGAGCACCTCACCAGCCCACTTAGCCCTGCCCAGGAGGAGCTGAAAGAAGGGCAGGCCCCCAAGCAGCAGCAGGACTCAGAGGCGAGAGTGGCCCCAGCCGGGCCAGAAGCAG|GCATGAGTTTCGTGTGCTGTGACTGAGACTGCCGGCGCTGGGGGCAGACAGCCCAGGGCTCTAGTCCAGATTCTCTGGCAGGGATTTGGGCAAACCAGACCTCTCTGTGCTGCCTGCCCTGCTGTAAAATGGAGATGAGAACaGCGCCTTCACCATCGGCCTTTGTGGGACTCGAGGGGGACTCGTGAC...GTTGTCACAAACAAGAAGATCTGTGATTATTTCCCTCCTTCTCTCATGTGGGTCTAGCAGGCTGCCTTAGCTTCCTCGCGGTGGAGGGCAGACTGTCTGCA RMMGTGLPPYPEHLTSPLSPAQEELKEGQAPKQQQDSEARVAPAGPEA|gmsfvccd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE KIAA1549 2 pilocytic astrocytoma other fusion translocation 7505 ENSG00000240207::IQCJ ENSG00000240207.7::ENSG00000214216.11 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000240207 ENSG00000240207.7 lncRNA + + chr3:158732263-158784070:+ chr3:158742144:+ chr3:158450052-158501859:+ chr3:158459933:+ IQCJ ENSG00000214216.11 protein_coding + + chr3:158962928-159266307:+ chr3:159262548:+ chr3:158680717-158984096:+ chr3:158980337:+ chr3:158760813,chr3:158760813 chr3:159256072,chr3:159256069 NA NA chr3:158478602,chr3:158478602 chr3:158973861,chr3:158973858 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Fusion_protein_IQCJ-SCHIP1_with_IQ-like_motif(77%) |IQ(0%),IQCJ-SCHIP1(96%) 0 2 0 6 7 ENST00000465477.5 ENST00000482126.1 downstream upstream duplicates(1) CTGGTCGAGGTTGTATCAGTAAGAAGGGAGCACGGAACAGATTCAAGCTCAG|CATTCAGCGAGCATGGCGAGAGTACCTGCAGCGGCAGGAGCCCCTGGGGAAGAGGAGCCCGTCCCCACCCTCTGTCTCCTCAGAGAAGCTGAGCAGCTCTGTCAGCATGAACACCTTCTCCGACAGCAGCACAC...GACAAGTTGCCTGGTGGAAGGAAGGTGATTCTTCTCTACCTTGACCAGCTTGCCAGACCCACTGGGTTCATACATACTCTCAAGGAGCCCCAGATAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7507 ACYP2::MAGED2 ENSG00000170634.13::ENSG00000102316.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACYP2 ENSG00000170634.13 protein_coding + + chr2:53970838-54305300:+ chr2:54138717:+ chr2:54197975-54532437:+ chr2:54365854:+ MAGED2 ENSG00000102316.17 protein_coding + + chrX:54807599-54816015:+ chrX:54812987:+ chrX:54834032-54842448:+ chrX:54839420:+ chr2:54261625,chr2:54261625 chrX:54812456,chrX:54812454 NA NA chr2:54488762,chr2:54488762 chrX:54838889,chrX:54838887 NA NA sense sense unknown CDS CDS translocation low none Acylphosphatase(46%)|MAGE_homology_domain(45%) Acylphosphatase(12%)|MAGE(50%) 0 0 4 110 238 ENST00000607452.6 ENST00000375068.6 downstream upstream none CTCTTCCCACGGACaCGCGAGACAATGAGGAG___GTGTTTGCTTCAGAATG___TATACAGAAGATGAAGCTAGGAAAATAGGAGTGGTTGGCTGGGTGAAGAATACCAGCAAAGGCACCGTGACAGGCCAAG...|...TAGCATCATCTTCATGAATGGAAATCGGTCCAGTGAGG___CTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTGCGCCCTGG___GATACATCATTCACTCTTTGGGGACGTGAAGAAGCTCATCACTGATGAGTTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7523 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE TRUE 748 TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124244450:+ chr7:123672180-124129626:+ chr7:123884504:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 11 19 78 830 71 ENST00000685801.1 ENST00000651674.1 upstream upstream duplicates(6),mismappers(1),mismatches(25) CGCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|CTTTTTCTTTGGTCTTTTGGAACACTTATTTTGGGGGAAGCAAACTCCATGTAAGTAGTGCAAGCCCAAGACTTCATGCTGTGAGGAAGCCCAAGGTAGCTACAGGAAGAGAAGCAGATGCCTGAAGCTTCTGGCTGTTCATCTATTCAAGCCCAGGTACCAGATTTGAATGAAGAAGCTGTCAGAGGACTTTATCCTCAGCTGCTCTGTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7524 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE TRUE 749 TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124287289:+ chr7:123672180-124129626:+ chr7:123927343:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 14 6 45 830 110 ENST00000685801.1 ENST00000667657.1 upstream upstream duplicates(5),mismatches(9) GCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|GTCTGACATTGGAATAATGCAGAACACTTGATTCAGGTCATAGAAGAAGCAACACTTTGGGCACAGCACAACACAACCAAGTGAGCACTGGAAACCTG___GCACCCATAGGATATTGAAAGTTATCAGGATATTCTTCCCACTCCAAGATCCAGGAAAGTAACACATCAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7525 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124306478:+ chr7:123672180-124129626:+ chr7:123946532:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 2 0 20 830 265 ENST00000685801.1 ENST00000658206.1 upstream upstream mismatches(6) CCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|GCACCCATAGGATATTGAAAGTTATCAGGATATTCTTCCCACTCCAAGATCCAGGAAAGTAACACATCAATACAGGACAAGGAGATGCTTCAACATCAGAAATGCATGGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7526 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124334247:+ chr7:123672180-124129626:+ chr7:123974301:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 2 0 6 830 29 ENST00000685801.1 ENST00000667657.1 upstream upstream mismatches(1) CGCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|TTCTGGATGTTGGGAAGCAGAAGAACAAGGTGCCAGCAGATCCAGTGTCTGTGAGAGCTGCTGTCAGCTTCCAGATGGTGCCTTATTGCTgCATCCTTTAAGGTGTTGAACCCTGTGTCTTCACATGGCCAAAAGAAGAGAAGG___GTCATAGGAAATGAAACAGACTGCTGTTTTCATGAG___TTGCATTGGATTGCTTGAAAGAATCTGGCTGCTATAATGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7527 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36370586:- chr22:36677326-36784055:- chr22:36766631:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124244450:+ chr7:123672180-124129626:+ chr7:123884504:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 1 78 1 71 ENST00000688137.1 ENST00000651674.1 upstream upstream duplicates(5),mismatches(16) GGAACTGTTGTAGAAAGCTGGTGCAGGACTATAACCTAAACTCCCAG|CTTTTTCTTTGGTCTTTTGGAACACTTATTTTGGGGGAAGCAAACTCCATGTAAGTAGTGCAAGCCCAAGACTTCATGCTGTGAGGAAGCCCAAGGTAGCTACAGGAAGAGAAGCAGATGCCTGAAGCTTCTGGCTGTTCATCTATTCAAGCCCAGGTACCAGATTTGAATGAAGAAGCTGTCAGAGGACTTTATCCTCAGCTGCTCTGTGGCTGAAACTCTATGAAGGACTCCAAGCTGAACATACCATCTGCAGAACCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7528 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124255216:+ chr7:123672180-124129626:+ chr7:123895270:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 1 1 50 830 34 ENST00000685801.1 ENST00000669475.1 upstream upstream duplicates(5),mismatches(8) GCGGTTCCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|GGCGTTGTGAATGGCCCAGCATTCCCTGTACTAAACTAAGG___GTCTGACATTGGAATAATGCAGAACACTTGATTCAGGTCATAGAA...___GCACCCATAGGATATTGAAAGTTATCAGGATATTCTTCCCACTCCAAGATCCAGGAAAGTAACACATCAATACAGGACAAGGAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7529 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124352816:+ chr7:123672180-124129626:+ chr7:123992870:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 1 2 3 830 117 ENST00000685801.1 ENST00000484322.5 upstream upstream mismatches(1) CCTGGGCAGGGCACGGAAGGCTAAGCAAGGCTGACCTGCTGCAGCTCCCGCCTCGTGCGCTCGCCCCACCCGGCCGCCGCCCGAGCGCTCGAGAAAGTCCTCTCGGGAGAAGCAGCGCCTGTTCCCGGGGCAGATCCAGGTTCAG|GTCATAGGAAATGAAACAGACTGCTGTTTTCATGAG___AAAACGAGTGTGCGAGAAGTATGTTGTAATTGAAGTAGCATACTGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7530 NUP153::GMDS ENSG00000124789.12::ENSG00000112699.11 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP153 ENSG00000124789.12 protein_coding - - chr6:17615035-17706925:- chr6:17706277:- chr6:17615266-17707156:- chr6:17706508:- GMDS ENSG00000112699.11 protein_coding - + chr6:1623806-2245605:- chr6:1856813:+ chr6:1624041-2245839:- chr6:1857047:+ chr6:17698649,chr6:17698651 chr6:1832878,chr6:1832876 NA NA chr6:17698880,chr6:17698882 chr6:1833112,chr6:1833110 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 24 52 16 535 246 ENST00000262077.3 unknown upstream upstream duplicates(5),mismappers(2),mismatches(10) CTCCCGCCCCCTTACCCGCCCCGGAGCGGGAAGCGGCGGAGGCTCCGCCATGGCCTCGGGAGCCGGAGGAGTCGGAGGGGGCGGTGGCGGCAAGATCCGGACGCGGCGTTGCCACCAGGGGCCAATTAAGCCTTACCAGCAGGGGCGACAACAGCATCAG|GGCCATGTGGATGTGAACAGAATCCTTCCTTATGTCCATCTTGGAGGTGAGAGGCATCAACTCTCATGTGCCACTGAGAGAGAGGGCAAAAATATTAAAAACCATTGCTGGAAGGACACCTTGTGAGTTTGTAAGTTTTTCAGCACACTTATCATCTAAGAAACTAAACTAATGAACTCAGTCCCAGAATGCATAGAGTTG MASGAGGVGGGGGGKIRTRRCHQGPIKPYQQGRQQHQ|ghvdvnrilpyvhlggerhqlscateregkniknhcwkdtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7531 FAAP100::NPLOC4 ENSG00000185504.17::ENSG00000182446.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE TRUE 750 TRUE 1313 TRUE 510 FAAP100 ENSG00000185504.17 protein_coding - - chr17:81539885-81553961:- chr17:81552166:- chr17:79506911-79520987:- chr17:79519192:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81559416:- chr17:79523913-79615495:- chr17:79526442:- chr17:81552086,chr17:81552090 chr17:81561166,chr17:81561167 NA NA chr17:79519112,chr17:79519116 chr17:79528192,chr17:79528193 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none |zf-RanBP(100%) 30 38 18 208 933 ENST00000443656.6 ENST00000572760.5 upstream downstream duplicates(9),mismappers(2),mismatches(13) CGCGCGCACGATGGCCGGCGCCGCGCCGCGGGTCCGCTACCTGGCGGGCTTCTGCTGCCCTCTCGGGGGCCTGGCGGCGGGCAAGCCCCGCGTGCTGTGCCATGAGGCAGAGGTCTTCCTGTCCACCGGGAGCGAGCTCGTCTACGTGTACGACCAGGAGGGCGGGCTGCTGACC|GCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGGGGCTCCACACACACGGCCACTGCAGCCATGTGGGCCTGTCAGCACTGCACGTTCATGAACCAGCCAGGCACAGGCCACTGCGAGATGTGCAGCCTCCCCAGGACCTAGGGCGCCTGCCCTCTGCTGGCTAGGACCGGGCCCAGCCCAGCCCTTCCTGAAGCCAGA MAGAAPRVRYLAGFCCPLGGLAAGKPRVLCHEAEVFLSTGSELVYVYDQEGGLLT|AQLAGSSQVSMSTAPSGAPHTRPLQPCGPVSTARS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7532 FAAP100::NPLOC4 ENSG00000185504.17::ENSG00000182446.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE TRUE 751 TRUE 1313 TRUE 510 FAAP100 ENSG00000185504.17 protein_coding - - chr17:81539885-81553961:- chr17:81553074:- chr17:79506911-79520987:- chr17:79520100:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81559416:- chr17:79523913-79615495:- chr17:79526442:- chr17:81552086,chr17:81552090 chr17:81561166,chr17:81561167 NA NA chr17:79519112,chr17:79519116 chr17:79528192,chr17:79528193 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none |zf-RanBP(100%) 0 13 0 9 933 ENST00000544302.1 ENST00000331134.11 upstream downstream none CATGGAGCAGGTGTCgGTACTGCAGGCCCCTCCACGGGCGTTCTCTG|GCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGGGGCTCCACACACACGGCCACTGCAGCCATGTGGGCCTGTCAGCACTGCACGTTCATGAACCAGCCAGGCACAGGCCACTGCGAGATGTGCAGCCTCCCCAGGACCTAGGGCGCCTGCCCTCTGCTGGCTAGGACCGGGCCCAGCCCAGCCCTTCCTGAAGCCAGAAGCGTTGCTGAGTGTGTTCCCTGTAACTGCCCCATAGTGGGCAGCCCTGGAGGAACAAGGGGCTGGCTGTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7533 FAAP100::NPLOC4 ENSG00000185504.17::ENSG00000182446.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1313 TRUE 510 FAAP100 ENSG00000185504.17 protein_coding - - chr17:81539885-81553961:- chr17:81553445:- chr17:79506911-79520987:- chr17:79520471:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81559416:- chr17:79523913-79615495:- chr17:79526442:- chr17:81552086,chr17:81552090 chr17:81561166,chr17:81561167 NA NA chr17:79519112,chr17:79519116 chr17:79528192,chr17:79528193 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none |zf-RanBP(100%) 1 0 0 2 933 ENST00000536161.1 ENST00000331134.11 upstream downstream none CAGCGGAGGATCCCTGTGGGGAAATTCACAACGATGCGGCATCTGACTTCCTGACTCTGAAGGCCAAATGAGATGCACCTGGCCCTCCTCTCCCCcCTCCC...CCTTCAGAGCAGCCCTGGCGAGAAGAGAGGAGCAAGGAACTGACTCCAG|GCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGG FRAALARREEQGTDSr|hswraaprsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7534 AFG3L1P::ENSG00000267048 ENSG00000223959.11::ENSG00000267048.1 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AFG3L1P ENSG00000223959.11 transcribed_unitary_pseudogene + + chr16:89972581-90002161:+ chr16:89972765:+ chr16:90038989-90068569:+ chr16:90039173:+ ENSG00000267048 ENSG00000267048.1 lncRNA + + chr16:89906157-89918233:+ chr16:89917876:+ chr16:89972565-89984641:+ chr16:89984284:+ chr16:89974467,chr16:89974467,chr16:89974464 chr16:89917782,chr16:89917779,chr16:89917776 NA NA chr16:90040875,chr16:90040875,chr16:90040872 chr16:89984190,chr16:89984187,chr16:89984184 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 18 15 18 159 91 ENST00000418696.5 ENST00000570217.1 downstream upstream duplicates(3),low_entropy(1),mismatches(14) GGCGCGGGATCTGGGTCTGGGGATGTGGTACCGGCTGCTGGCGGCGGCCGGCAGTAGAGCGGTGGCCAGGCCGCTGGCCTTGCTGTGGCGATGTGGTGGCCCAGGAGGCGGCAGGACGGCCAAGACCAGCGCGAGGGCCCTGGGCAAGGCCCGACAG|CACAGACGCAGTCTTCAGCAAGGAAGTGCTGGGAACGCCCTGGAGTGAACCCAGGAAGATGCCTGCAGTGGGTGCCAGGGCCCCTCcCCACCGTCCCTGCTGGGCTTCGGGGCCACGCCCGACTGCTGTGAACGGCCTGCGGAGCACCACGTGCGACGGCTGGAGGCGAGAGGTCTGCCTTTGATGTGGCTGTTGGTGCAGGGCCTGTGGTGCCTTCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7535 AFG3L1P::MC1R ENSG00000223959.11::ENSG00000258839.4 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE TRUE 752 FALSE NA FALSE NA AFG3L1P ENSG00000223959.11 transcribed_unitary_pseudogene + + chr16:89972581-90002161:+ chr16:89972765:+ chr16:90038989-90068569:+ chr16:90039173:+ MC1R ENSG00000258839.4 protein_coding + + chr16:89912119-89920973:+ chr16:89917876:+ chr16:89978527-89987381:+ chr16:89984284:+ chr16:89974467,chr16:89974467,chr16:89974464 chr16:89917782,chr16:89917779,chr16:89917776 NA NA chr16:90040875,chr16:90040875,chr16:90040872 chr16:89984190,chr16:89984187,chr16:89984184 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%),7tm_4(100%) 18 11 16 159 91 ENST00000418696.5 ENST00000555427.1 downstream upstream duplicates(2),low_entropy(1),mismatches(11) GGCGCGGGATCTGGGTCTGGGGATGTGGTACCGGCTGCTGGCGGCGGCCGGCAGTAGAGCGGTGGCCAGGCCGCTGGCCTTGCTGTGGCGATGTGGTGGCCCAGGAGGCGGCAGGACGGCCAAGACCAGCGCGAGGGCCCTGGGCAAGGCCCGACAG|CACAGACGCAGTCTTCAGCAAGGAAGTGCTGGGAACGCCCTGGAGTGAACCCAGGAAGATGCCTGCAGTGGGTGCCAGGGCCCCTCcCCACCGTCCCTGCTGGGCTTCGGGGCCACGCCCGACTGCTGTGAACGGCCTGCGGAGCACCACGTGCGACGGCTGGAGGCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7536 FUBP1::USH2A ENSG00000162613.18::ENSG00000042781.14 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FUBP1 ENSG00000162613.18 protein_coding - - chr1:77944055-77979110:- chr1:77956572:- chr1:78409740-78444794:- chr1:78422257:- USH2A ENSG00000042781.14 protein_coding - + chr1:215622891-216423448:- chr1:216072005:+ chr1:215796233-216596790:- chr1:216245347:+ chr1:77955924,chr1:77955932 chr1:216067222,chr1:216067220 NA NA chr1:78421609,chr1:78421617 chr1:216240564,chr1:216240562 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none KH_domain(100%)| KH_1(100%),KH_2(100%)| 11 3 13 1109 15 ENST00000370768.7 unknown upstream upstream duplicates(2),mismatches(2),multimappers(1) CAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACACTGGCAGCAGCAGGCTCCTCCTGATCCAG___CTAAGGCAGGAACGGATCCAAATTCAGCAGCTTGGGCTGCTTATTACGCTCACTATTATCAACAGCAAGCACAGCCACCACCAGCAGCCCCTGCAGGTGCACCAACTACAACTCAAACTAATGGACAAG|ATTAAGAAGATTCCTCAAAGGATGCCTGGGATAGTAACCTACTGTTGATTAAGTATAAGAGAATACCTTGATGGAAACACGTCTTTAGACAAATTGATACTCGCTGAATAAACTTCCTTGCT APYAPQGWGNAYPHWQQQAPPDPAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQ|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE far upstream element (FUSE) binding protein 1 1 Yes oligodendroglioma other oncogene frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 7538 KATNB1::NLRC5 ENSG00000140854.13::ENSG00000140853.17 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE TRUE 753 FALSE NA FALSE NA KATNB1 ENSG00000140854.13 protein_coding + + chr16:57735739-57757244:+ chr16:57741817:+ chr16:57769651-57791156:+ chr16:57775729:+ NLRC5 ENSG00000140853.17 protein_coding + + chr16:56989485-57083531:+ chr16:57067736:+ chr16:57023397-57117443:+ chr16:57101648:+ chr16:57743358,chr16:57743356 chr16:57067453,chr16:57067448 NA NA chr16:57777270,chr16:57777268 chr16:57101365,chr16:57101360 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none WD_domain__G-beta_repeat(21%)|Leucine_Rich_repeat(69%) WD40(26%)|LRR_6(57%) 7 7 6 108 55 ENST00000379661.8 ENST00000262510.10 downstream upstream mismatches(4) GGTGGGGCTTCAGGTGCCAGCCAGCTGAAGGATGGCCACCCCTGTGGTCACCAAGACAGCCTGGAAGTTGC___AAGAGATCGTCGCGCATGCCAGCAACGTGTCCTCACTGGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAGGCGGGGATGACTGCCGCGTCAACCTGTGGTCCATCAACAAGCCCAACTGCATCATG|CTTGTCTCAGGTTAACCTCTGTGAGGACGATGATGCCAGTTCCCTGCTGCTGCAGAGCCTCCTGCTGTCCCTCTCTGAGCTGAAGACATTTCG___GCTGACCTCCAGCTGTGTGAGCACCGAGGGCCTCGCCCACCTGGCATCTGGTCTGGGCCAC MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIM|lvsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7539 NFATC1::LINC02008 ENSG00000131196.18::ENSG00000239440.6 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFATC1 ENSG00000131196.18 protein_coding + + chr18:79395856-79529325:+ chr18:79400479:+ chr18:77155856-77289325:+ chr18:77160479:+ LINC02008 ENSG00000239440.6 lncRNA + - chr3:81986138-82463675:+ chr3:82077196:- chr3:82035289-82512826:+ chr3:82126347:- chr18:79406378,chr18:79406370 chr3:82077587,chr3:82077595 NA NA chr18:77166378,chr18:77166370 chr3:82126738,chr3:82126746 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 2 4 2 5 6 ENST00000318065.9 unknown downstream downstream none CCgGCCCCGGCCCCGGCCCGACCCGCCATGACGGGGCTGGAGGACCAGGAGTTCGACTTCGAGTTCCTCTTCGAGTTTAACCAGCGCGACGAGGGCGCCGCCGCGGCCGCCCCAG|ACTAAACTCAGAGCCATCCAGTGTTTCATGGAAGCATTGCAAAATCCCAGTCCTGTGAATACCAGAAGCCAAGGCATAATGAGGAATTC...GTCTGCCAGGGATGATTTTCCCTCAACTATATACTAAACTCCAAGATGAGTTAAAATCTGCTTTTATGATTCTGAGGAAAACCGCAGAAGAGTGAGAGACAAATGAGTGAAAAAGAAAG___ATTTATCCACACATCTGGATAAATGTGTGAAAAAGGAAACAATTTTTTTTAATCTACCATG MTGLEDQEFDFEFLFEFNQRDEGAAAAAP|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7543 FAAH2::NBDY ENSG00000165591.7::ENSG00000204272.13 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1315 TRUE 511 FAAH2 ENSG00000165591.7 protein_coding + + chrX:57286706-57489193:+ chrX:57341390:+ chrX:57313139-57515626:+ chrX:57367823:+ NBDY ENSG00000204272.13 protein_coding + + chrX:56729241-56819179:+ chrX:56770018:+ chrX:56755674-56845612:+ chrX:56796451:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Amidase(40%)| Amidase(24%)| 4 0 3 139 11 ENST00000374900.5 unknown downstream upstream duplicates(4) ATGCTGTAGATCAAAAGCTTGCAGAGAAGCAGGAAGATGAAGCCACCCTGGAAAATAAATGGCCCTTCCTTGGGGTTCCTTTGACAGTCAAGGAAGCTTTC...ATGCCCAATTCTTCTGGACTCATGAACCGTCGTGATGCCATTGCCAAAACAGATGCCACTGTGGTGGCATTACTGAAGGGAGCTGGTGCCATTCCTCTTGG...CAACCCATATGATTTACAGCATATTGTAGGTGGAAGTTCTG___GTGGTGAGGGCTGCACACTGGCAGCTGCCTGCTCAGTTATTGGTGTGGGCTCTGATATTGGTGGTAGCATTCGAATGCCTGCTTTCTTCAATGGTATATTTGGACACAAGCCTTCTCCAG|GTAGCATGCACCAGGGTGCGCCTCTGGCGGTGCCTAGGGAGAACGCGAGAAGAAAAGAATGCAGGAAGA NPYDLQHIVGGSSGGEGCTLAAACSVIGVGSDIGGSIRMPAFFNGIFGHKPSP|gsmhqgaplavprenarrkecrk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7544 FAAH2::NBDY ENSG00000165591.7::ENSG00000204272.13 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA TRUE 1315 TRUE 511 FAAH2 ENSG00000165591.7 protein_coding + + chrX:57286706-57489193:+ chrX:57341390:+ chrX:57313139-57515626:+ chrX:57367823:+ NBDY ENSG00000204272.13 protein_coding + + chrX:56729241-56819179:+ chrX:56817320:+ chrX:56755674-56845612:+ chrX:56843753:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Amidase(40%)| Amidase(24%)| 0 1 3 139 365 ENST00000374900.5 ENST00000374922.9 downstream upstream none CAACCCATATGATTTACAGCATATTGTAGGTGGAAGTTCTG___GTGGTGAGGGCTGCACACTGGCAGCTGCCTGCTCAGTTATTGGTGTGGGCTCTGATATTG...CATTCGAATGCCTGCTTTCTTCAATGGTATATTTGGACACAAGCCTTCTCCAG|TCTTATGATGTAATCAGCGCGATTTCACTTCCTGAATTTCGATGAATTCTAAGACATGGGCAAGATCGGGTTGTAAGACCTCTGAGATTTAAGGCCATGCCCTGGATCATGGTGAACTTACCAAAGCAAACAATGCCTGTGAGATGGTCCTGCAGCAGCCAACCAGTGAACTCTTTTGGTGACATCCTGTTCTTGTTGTATAACTTTAT IRMPAFFNGIFGHKPSP|vl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7545 NUP153::ZNF341 ENSG00000124789.12::ENSG00000131061.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP153 ENSG00000124789.12 protein_coding - - chr6:17615035-17706925:- chr6:17706277:- chr6:17615266-17707156:- chr6:17706508:- ZNF341 ENSG00000131061.15 protein_coding + - chr20:33731657-33792269:+ chr20:33738902:- chr20:32319463-32380075:+ chr20:32326708:- chr6:17704897,chr6:17704900 chr20:33742667,chr20:33742667 NA NA chr6:17705128,chr6:17705131 chr20:32330473,chr20:32330473 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 4 2 1 535 20 ENST00000262077.3 unknown upstream downstream mismatches(1) CGGACCGGAGCCTCCTCGGCCTCTGCGGCCGCCACCCCCTTCCCCGCTGCCAGCACTCACCCTCTCTCCGCTCCTGCTCGCAACCTCGCGGTTCCTGGGGT...CTTGTGCCCACTGTGTGGACAGCGCGGGCGGACTTTTGGGCCGGGGCCGGGCGGCGGGGGAGGCTCTCTAAGGCCTCCGCCTCTGCCTCTCCCcCCCCCTT...GGCGGAGGCTCCGCCATGGCCTCGGGAGCCGGAGGAGTCGGAGGGGGCGGTGGCGGCAAGATCCGGACGCGGCGTTGCCACCAGGGGCCAATTAAGCCTTACCAGCAGGGGCGACAACAGCATCAG|GCTGTGTCCCTCCTGACGCTGCCAGCGCAGCCCTCCCCTCCATCTCCTCCTGCTCCTCAGAAGCCACTCTCCACCAACTCTCACCACACTGTGCCTGGGAACCATCCACAGCTACACACGATCAGTCTCTCCAGAGTGCCCTCCTGCAAATTCATGTTTCCA MASGAGGVGGGGGGKIRTRRCHQGPIKPYQQGRQQHQ|avslltlpaqpsppsppapqkplstnshhtvpgnhpqlhtislsrvpsckfmf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7548 CYP39A1::FAM83B ENSG00000146233.8::ENSG00000168143.9 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1317 TRUE 512 CYP39A1 ENSG00000146233.8 protein_coding - - chr6:46549580-46652830:- chr6:46630963:- chr6:46517317-46620567:- chr6:46598700:- FAM83B ENSG00000168143.9 protein_coding + + chr6:54846771-54945099:+ chr6:54939706:+ chr6:54711569-54809897:+ chr6:54804504:+ chr6:46626705,chr6:46626709 chr6:54929104,chr6:54929100 NA NA chr6:46594442,chr6:46594446 chr6:54793902,chr6:54793898 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Cytochrome_P450(58%)|FAM83_A-H(13%) p450(21%)|FAM83(0%),PLDc_2(0%) 2 2 2 60 61 ENST00000619708.4 ENST00000306858.8 upstream upstream none AAACTGGTCAAAATCCAAAAAGTGGTTCCTGGAACTGTTTGAGAAAAACATTCCAGATATAAAAGCATGTAAATCTGCAAAAGATAATTCCATG___ACATTATTGCAAGCTACGCTGGATATTGTAGAGACGGAAACAAGTAAGGAAAACTCACCCAATTATGGGCTCTTACTGCTTTGGGCTTCTCTGTCTAATGCTGTTCCT|TTATATGTGGTCATTTGAGAAAGCTCACCTCAGCATGGTTCAGATAATTACAGGACAACTTGTTGAGTCCTTTGATGAAGAATTTAGAACTCTCTATGCCAGATCCTGTGTCCCTAGTTCATTTGCTCAGGAAGAATCAGCAAGGGTGAAGCATGGAAAAGCCCTCTGGGAAAATGGCACTTACCAGCATTCGGTGTCTTCATTAGCATCTGTT NWSKSKKWFLELFEKNIPDIKACKSAKDNSMTLLQATLDIVETETSKENSPNYGLLLLWASLSNAVP|lyvvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7549 CYP39A1::FAM83B ENSG00000146233.8::ENSG00000168143.9 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1317 TRUE 512 CYP39A1 ENSG00000146233.8 protein_coding - - chr6:46549580-46652830:- chr6:46636389:- chr6:46517317-46620567:- chr6:46604126:- FAM83B ENSG00000168143.9 protein_coding + + chr6:54846771-54945099:+ chr6:54939706:+ chr6:54711569-54809897:+ chr6:54804504:+ chr6:46626705,chr6:46626709 chr6:54929104,chr6:54929100 NA NA chr6:46594442,chr6:46594446 chr6:54793902,chr6:54793898 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Cytochrome_P450(50%)|FAM83_A-H(13%) p450(15%)|FAM83(0%),PLDc_2(0%) 1 0 2 77 61 ENST00000619708.4 ENST00000306858.8 upstream upstream none GGGAAAATGGGGACTGTCAATCTCCATCAGTTTACTGGGCAACTGACTGAAGAATTACATGAACAACTGGAGAATTTAGGCACTCATGGGACAATGGACCT...GTTGCCAGAGTGTCTTCTAAG___AAACTGGTCAAAATCCAAAAAGTGGTTCCTGGAACTGTTTGAGAAAAACATTCCAGATATAAAAGCATGTAAATCTGCAAAAGATAATTCCATG|TTATATGTGGTCATTTGAGAAAGCTCACCTCAGCATGGTTCAGATAATTACAGGACAACTTGTTGAGTCCTTTGATGAAGAATTTAGAACTCTCTATGCCAGATCCTGTGTCCCTAGTTCATTTGCTCAGGAAGAATCAGCAAGGGTGAAGCATGGAAAAGCCCTCTGGGAAAAT LPECLLRNWSKSKKWFLELFEKNIPDIKACKSAKDNSM|lyvvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7551 CYP39A1::FAM83B ENSG00000146233.8::ENSG00000168143.9 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1317 TRUE 512 CYP39A1 ENSG00000146233.8 protein_coding - - chr6:46549580-46652830:- chr6:46642163:- chr6:46517317-46620567:- chr6:46609900:- FAM83B ENSG00000168143.9 protein_coding + + chr6:54846771-54945099:+ chr6:54939706:+ chr6:54711569-54809897:+ chr6:54804504:+ chr6:46626705,chr6:46626709 chr6:54929104,chr6:54929100 NA NA chr6:46594442,chr6:46594446 chr6:54793902,chr6:54793898 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Cytochrome_P450(17%)|FAM83_A-H(13%) p450(10%)|FAM83(0%),PLDc_2(0%) 1 0 0 30 61 ENST00000275016.3 ENST00000306858.8 upstream upstream none TGTGTTTCTAAAATCCAAAAAAGTAGATTTTGAACTAGCAGTGCAAAATATCGTTTATCGTACAG|TTATATGTGGTCATTTGAGAAAGCTCACCTCAGCATGGTTCAGATAATT VFLKSKKVDFELAVQNIVYRT|vicghlrkltsawfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7564 ECH1::LINC03002 ENSG00000104823.9::ENSG00000232310.10 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1320 TRUE 513 ECH1 ENSG00000104823.9 protein_coding - - chr19:38815422-38831841:- chr19:38831078:- chr19:39306062-39322481:- chr19:39321718:- LINC03002 ENSG00000232310.10 lncRNA - - chr6:134520163-134689399:- chr6:134643177:- chr6:134841301-135010537:- chr6:134964315:- chr19:38821385,chr19:38821387 chr6:134652212,chr6:134652211 NA NA chr19:39312025,chr19:39312027 chr6:134973350,chr6:134973349 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none Enoyl-CoA_hydratase/isomerase(20%)| ECH_1(1%),ECH_2(1%)| 3 2 3 3956 9 ENST00000221418.9 unknown upstream downstream mismatches(4) GAAACATGTTCTGCATGTCCAGCTCAACCGGCCCAACAAGAGGAATGCCATGAACAAGGTCTTCTGGAG___AGAGATGGTAGAGTGCTTCAACAAGATTTCGAGAGACGCTGACTGTCGGGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCACTGCAG|CACATCTCAACATGGACTGGACACATTTCAAATACTCAGGAGGCACATATGGCTAGTGGCAACTGTATTGGACAGCACAGATCTAAAACAAACCCTCACCTCCAGCCACTCTCAATCACATCGCCCTGCTTTATCATGATTGTAACGCTTATTAGTGTTTGAAATTACCTGGCTTATTTACTTGAACATTATTCCGCCTTGTTCTCTA KHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTA|ahlnmdwthfkysggtyg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7565 ECH1::LINC03002 ENSG00000104823.9::ENSG00000232310.10 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1320 TRUE 513 ECH1 ENSG00000104823.9 protein_coding - - chr19:38815422-38831841:- chr19:38831078:- chr19:39306062-39322481:- chr19:39321718:- LINC03002 ENSG00000232310.10 lncRNA - - chr6:134520163-134689399:- chr6:134629958:- chr6:134841301-135010537:- chr6:134951096:- chr19:38821385,chr19:38821387 chr6:134652212,chr6:134652211 NA NA chr19:39312025,chr19:39312027 chr6:134973350,chr6:134973349 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Enoyl-CoA_hydratase/isomerase(20%)| ECH_1(1%),ECH_2(1%)| 0 1 1 3956 3 ENST00000221418.9 ENST00000665479.1 upstream downstream mismatches(2) GCAGAAACATGTTCTGCATGcCCAGCTCAACCGGCCCAACAAGAGGAATGCCATGAACAAGGTCTTCTGGAG___AGAGATGGTAGAGTGCTTCAACAAGATTTCGAGAGACGCTGACTGTCGGGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCACTGCAG|GGCTCACAGAGCCAGAAAAGGAGATGAAATCCCTTTAATGGTTCATTGTCATCATCTTCATCCAGCGTCCTTCAGAAGTATAGAGG___ACGGAGTTTCTGTCTTGTCGCTCAGGGTGGAGTGCAATGGCACAGTCTCG QKHVLHaQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTA|gltepekemksl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7566 ENSG00000268083::LINC03002 ENSG00000268083.5::ENSG00000232310.10 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1321 TRUE 514 ENSG00000268083 ENSG00000268083.5 protein_coding - - chr19:38817471-38840178:- chr19:38831078:- chr19:39308111-39330818:- chr19:39321718:- LINC03002 ENSG00000232310.10 lncRNA - - chr6:134520163-134689399:- chr6:134643177:- chr6:134841301-135010537:- chr6:134964315:- chr19:38821385,chr19:38821387 chr6:134652212,chr6:134652211 NA NA chr19:39312025,chr19:39312027 chr6:134973350,chr6:134973349 NA NA sense sense unknown CDS/splice-site intron translocation medium none none ECH_1(1%),ECH_2(1%)| 3 2 3 3956 9 ENST00000594769.5 unknown upstream downstream mismatches(4) GAAACATGTTCTGCATGTCCAGCTCAACCGGCCCAACAAGAGGAATGCCATGAACAAGGTCTTCTGGAG___AGAGATGGTAGAGTGCTTCAACAAGATTTCGAGAGACGCTGACTGTCGGGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCACTGCAG|CACATCTCAACATGGACTGGACACATTTCAAATACTCAGGAGGCACATATGGCTAGTGGCAACTGTATTGGACAGCACAGATCTAAAACAAACCCTCACCTCCAGCCACTCTCAATCACATCGCCCTGCTTTATCATGATTGTAACGCTTATTAGTGTTTGAAATTACCTGGCTTATTTACTTGAACATTATTCCGCCTTGTTCTCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7567 ENSG00000268083::LINC03002 ENSG00000268083.5::ENSG00000232310.10 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1321 TRUE 514 ENSG00000268083 ENSG00000268083.5 protein_coding - - chr19:38817471-38840178:- chr19:38831078:- chr19:39308111-39330818:- chr19:39321718:- LINC03002 ENSG00000232310.10 lncRNA - - chr6:134520163-134689399:- chr6:134629958:- chr6:134841301-135010537:- chr6:134951096:- chr19:38821385,chr19:38821387 chr6:134652212,chr6:134652211 NA NA chr19:39312025,chr19:39312027 chr6:134973350,chr6:134973349 NA NA sense sense unknown CDS/splice-site exon/splice-site translocation low none none ECH_1(1%),ECH_2(1%)| 0 1 1 3956 3 ENST00000594769.5 ENST00000665479.1 upstream downstream mismatches(2) GCAGAAACATGTTCTGCATGcCCAGCTCAACCGGCCCAACAAGAGGAATGCCATGAACAAGGTCTTCTGGAG___AGAGATGGTAGAGTGCTTCAACAAGATTTCGAGAGACGCTGACTGTCGGGCGGTGGTGATCTCTGGTGCAGGAAAAATGTTCACTGCAG|GGCTCACAGAGCCAGAAAAGGAGATGAAATCCCTTTAATGGTTCATTGTCATCATCTTCATCCAGCGTCCTTCAGAAGTATAGAGG___ACGGAGTTTCTGTCTTGTCGCTCAGGGTGGAGTGCAATGGCACAGTCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7569 SIL1::PCDHGA9 ENSG00000120725.13::ENSG00000261934.3 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139021171:- chr5:138282413-138629246:- chr5:138356860:- PCDHGA9 ENSG00000261934.3 protein_coding + - chr5:141402778-141512975:+ chr5:141403297:- chr5:140782345-140892542:+ chr5:140782864:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none none none 1 1 2 342 4 ENST00000394817.7 unknown upstream downstream none TGCTGCGCTCTTTGATCTTGAATATTATGTCCATCAG___ATGGACAATGCGCAGGACCTGCTTTCCTTTGGTGGTCTTCAAGTGGTGATCAATGGGCTGAACAGCACAGAGCCCCTCGTGAAGGAGTATGCTGCGTTTGTGCTGGGCGCTGCCTTTTCCAG|TTTCACTCTGTCTTCAACCAGGACTTTAAAGTTCACCAGACACCGCGGGCTCTGAGCACAGAGCTCCTCCCGGTCTATCCTACCCGCGGTGACCAAGGTGCCGCTGCGCGGGTTCAGA...TAGAGACGATGCGGACTCGGCGCTCCGCCAGCTCCCGGGGCTCCAGAGCCAGGTCCTTGGAGATGTTGCCCACAATATAGCCCTTTTCTGTCTCTTCAGGC AALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSs|ftlsstrtlkftrhrgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7571 TNRC6C::SWT1 ENSG00000078687.18::ENSG00000116668.13 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1322 TRUE 515 TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:77959268:+ chr17:75954785-76104903:+ chr17:75955350:+ SWT1 ENSG00000116668.13 protein_coding + + chr1:185157080-185291781:+ chr1:185184743:+ chr1:185126212-185260913:+ chr1:185153875:+ chr17:77965910,chr17:77965903 chr1:185181090,chr1:185181080 NA NA chr17:75961992,chr17:75961985 chr1:185150222,chr1:185150212 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |PIN_domain(82%) |PIN_4(97%) 0 3 0 0 36 ENST00000696270.1 ENST00000367500.9 downstream upstream duplicates(1) GGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|GTTTTGACAAACTTGTGTTAATAATTCCCTGGGTCGTTATGCAAGAGCTAGATCGTATGAAGGAAGGAAAACTACTAAAACGTGCCCAGCACAAAGCTATACCTGCAGTTCATTTCATCAACGACAGTCTCAAAAATCAAGATAGAAAGCTATGGGGTCAGTCAATACAACTTGCATCCCAA...GATGAGAACAATGATGATCGAGTACTAAAATGCTGTCTCCAGCACCAGGAATTATTCCCTTGTTCTTTTGTTATTCTGTGCAC___GGATGATAGAAACTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7572 TNRC6C::SWT1 ENSG00000078687.18::ENSG00000116668.13 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1322 TRUE 515 TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:77959268:+ chr17:75954785-76104903:+ chr17:75955350:+ SWT1 ENSG00000116668.13 protein_coding + + chr1:185157080-185291781:+ chr1:185181946:+ chr1:185126212-185260913:+ chr1:185151078:+ chr17:77965910,chr17:77965903 chr1:185181090,chr1:185181080 NA NA chr17:75961992,chr17:75961985 chr1:185150222,chr1:185150212 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |PIN_domain(100%) |PIN_4(100%) 0 2 0 0 28 ENST00000696270.1 ENST00000367500.9 downstream upstream none CGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|ATGCAGATAGTAGAAGAGCTTCATGCTGCACGTGTGGGAAAAAGTGTGGATTTACCTGGAGAGTTAATGAGTATGGAAATTGACTTAGAAGATGATGTACATTCCTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7573 TNRC6C::SWT1 ENSG00000078687.18::ENSG00000116668.13 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA TRUE 1322 TRUE 515 TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:77959268:+ chr17:75954785-76104903:+ chr17:75955350:+ SWT1 ENSG00000116668.13 protein_coding + + chr1:185157080-185291781:+ chr1:185184243:+ chr1:185126212-185260913:+ chr1:185153375:+ chr17:77965910,chr17:77965903 chr1:185181090,chr1:185181080 NA NA chr17:75961992,chr17:75961985 chr1:185150222,chr1:185150212 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |PIN_domain(100%) |PIN_4(100%) 0 1 0 0 28 ENST00000696270.1 ENST00000367500.9 downstream upstream none CCGCCAGGCCCGCGCCACCGGAGCCCCGCGGAGCCGCCGCCGCCGCCGGGGACGGAGCCCAG|CAAATAATACTTCAGACAGAAAGCTTCTAATTGTTATTGACACAAATATTCTGATGAATCATCTCAAATTTGTTAGAATTTTGAAGACAACAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7577 ANKRD29::ENSG00000241593 ENSG00000154065.17::ENSG00000241593.5 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD29 ENSG00000154065.17 protein_coding - - chr18:23598926-23662911:- chr18:23638849:- chr18:21178890-21242875:- chr18:21218813:- ENSG00000241593 ENSG00000241593.5 lncRNA - - chr3:81246579-81297345:- chr3:81288224:- chr3:81295730-81346496:- chr3:81337375:- chr18:23635415,chr18:23635417,chr18:23635417 chr3:81292199,chr3:81292198,chr3:81292200 NA NA chr18:21215379,chr18:21215381,chr18:21215381 chr3:81341350,chr3:81341349,chr3:81341351 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Ankyrin_repeats_(3_copies)(34%)| Ank(0%),Ank_2(18%),Ank_3(44%),Ank_4(32%),Ank_5(68%)| 0 1 1 5 5 ENST00000592179.6 ENST00000464131.1 upstream downstream none GGAGCATCCACTGAATTTAGGACCAAA|CCACCCCAACCTCTGGCACCACCACTCTGATCAGACAGCAGCCATCAACATCTAGTCGAGACCCTCCACTAGCAAAGAGATTATGACTCACTGAAGGC GASTEFRTK|ppqplappl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7603 TSEN2::PPARG ENSG00000154743.19::ENSG00000132170.24 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1326 FALSE NA TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12496554:+ chr3:12525920-12583048:+ chr3:12538053:+ PPARG ENSG00000132170.24 protein_coding + + chr3:12287368-12434356:+ chr3:12392614:+ chr3:12328867-12475855:+ chr3:12434113:+ chr3:12503422,chr3:12503417 chr3:12388106,chr3:12388098 NA NA chr3:12544921,chr3:12544916 chr3:12429605,chr3:12429597 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Zinc_finger__C4_type_(two_domains)(65%) |Hormone_recep(100%),zf-C4(1%) 1 1 0 439 1589 ENST00000681140.1 ENST00000397010.7 downstream upstream duplicates(1) GGAGGACATTGAGCAGCTCTATGGGAAA___GGTTATTTTGGAAAAGGTATTCTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTA...TGAAGACAAACATGCCTATCATCACATCAAAGAG|GGTTTCTTCCGGAGAACAATCAGATTGAAGCTTATCTATGACAGATGTGATCTTAAaTGT...ATGCCACAGGCCGAGAAGGAGAAGCTGTTGGCGGAGATCTCCAGTGATATCGACCAGCTGAATCCAGAGTCCGCTGACCTCCGGGCCCTGGCAAAACATTT KTNMPIITSKr|vssgeqsd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma BLADDER,BLADDER,BLADDER no_match 12546730|12545283|12545283|12526379,12560696|12545283,12538053 FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,TRUE 12458203|12458203|12475397|12447381,12421203|12421203,12475397 FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,YES In-frame,CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE peroxisome proliferative activated receptor, gamma 1 Yes follicular thyroid epithelial TSG, fusion translocation 7606 SORL1::PCCA ENSG00000137642.13::ENSG00000175198.17 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE FALSE TRUE 757 FALSE NA FALSE NA SORL1 ENSG00000137642.13 protein_coding + + chr11:121452314-121633763:+ chr11:121615055:+ chr11:121323023-121504472:+ chr11:121485764:+ PCCA ENSG00000175198.17 protein_coding + + chr13:100089015-100530437:+ chr13:100425633:+ chr13:100741269-101182691:+ chr13:101077887:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Fibronectin_type_III_domain(67%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%),Sortilin__neurotensin_receptor_3_(100%),Sortilin__neurotensin_receptor_3__C-terminal(100%)|Biotin-requiring_enzyme(100%),Propionyl-coenzyme_A_carboxylase_BT_domain(60%) Ldl_recept_a(100%),Ldl_recept_b(100%),Sortilin-Vps10(100%),Sortilin_C(100%),fn3(43%)|Biotin_lipoyl(100%),CPSase_L_D2(0%),PCC_BT(40%),RimK(0%) 21 14 7 244 345 ENST00000260197.12 ENST00000376286.8 downstream upstream duplicates(1),mismatches(3) AGCATATTGTCACACAAAG___TTGGCAATCTGACAGCTCATACATCCTATGAGATTTCTGCCTGGGCCAAGACTGACTTGGGGGATAGCCCTCTGGCATTTGAGCATGTTATGACCAGAGGGGTTCGCCCACCTGCACCTAGCCTCAAGGCCAAAGCCATCAACCAGACTGCAGTGGAATGTACCTGGACCGGCCCCCGGAATGTG|GTGGAAGTTGATGGGTCGAAACTAAATGTGACCAGCACGTGGAACCTGGCTTCGCCCTTATTGTCTGTCAGCGTTGATGGCACTCAGAGGACTGTCCAG___TGTCTTTCTCGAGAAGCAGGTGGAAACATGAGCATTCAGTTTCTTGGTACAGTG___TACAAG SILSHKVGNLTAHTSYEISAWAKTDLGDSPLAFEHVMTRGVRPPAPSLKAKAINQTAVECTWTGPRNV|VEVDGSKLNVTSTWNLASPLLSVSVDGTQRTVQCLSREAGGNMSIQFLGTVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7607 STK17B::HECW2 ENSG00000081320.11::ENSG00000138411.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK17B ENSG00000081320.11 protein_coding - - chr2:196133583-196176503:- chr2:196156439:- chr2:196998307-197041227:- chr2:197021163:- HECW2 ENSG00000138411.13 protein_coding - - chr2:196189099-196593684:- chr2:196228254:- chr2:197053823-197458408:- chr2:197092978:- chr2:196146787,chr2:196146791 chr2:196232973,chr2:196232974 NA NA chr2:197011511,chr2:197011515 chr2:197097697,chr2:197097698 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(29%)|HECT-domain_(ubiquitin-transferase)(100%) ABC1(0%),PK_Tyr_Ser-Thr(26%),Pkinase(26%)|HECT(100%) 7 20 12 265 67 ENST00000409228.5 ENST00000644978.2 upstream downstream duplicates(4),mismatches(3) TAATAATTTCTATATACTTACATCTAAAGAGCTAGGGAG___AGGtAAATTTGCTGTGGTTAGACAATGTATATCAAAATCTACTGGCCAAGAATATGCTGCAAAATTTCTAAAAAAGAGAAGAAGAGGACAGGATTGTCGgGCAGAAATTTTACACGAGATTGCTGTGCTTGAATTGGCAAAGTCTTGTCCCCGTGTTATTAATCTTCATGAGGTCTATGAAAATACAAGTGAAATCATTTTGATATTGGAATA|GCTGGATTACAGTGGGCCTTCTAGAGAGTTTTTCTTCCTGGTATCCAGAGAACTCTTTAACCCATATTATGGCTTATTTGAATATTCAGCCAATGACACATACACAGTACAAATAAGTCCTATGTCTGCTTTTGTAGACAATCACCATGAATG___GTTCCGATTCAGTGGTAGGATCCTTGGTCTTGCACTAATAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 17B CAMK DAPK O94768 FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 197008284 FALSE 197208488 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7608 STK24::LINC03082 ENSG00000102572.15::ENSG00000275830.4 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98576745:- chr13:99097439-99230194:- chr13:99228999:- LINC03082 ENSG00000275830.4 lncRNA - - chr13:109988097-110129136:- chr13:110036971:- chr13:110640444-110781483:- chr13:110689318:- chr13:98528387,chr13:98528389 chr13:110093132,chr13:110093131 NA NA chr13:99180641,chr13:99180643 chr13:110745479,chr13:110745478 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 0 27 4 449 290 ENST00000539966.6 ENST00000670698.1 upstream downstream duplicates(2),inconsistently_clipped(2),mismatches(2) GTCGCGGCCCGGCCGTCCCGTCCCAGGAAGTGGCCGTCCTGAGCGCCATGGCTCACTCCCCGGTGCAGTCGGGCCTGCCCGGCATGCAG|GACTAAGCCAGTGGATCACAAACATCCTGGAGAGCAGTGACTCTGTGATTCCATCACAAGAATATGAAGGACTGAGAAGATCTCCAGCTCTGCCCATTGCACCTTCCCATTGAGAAGCAGCATGGCACCCTGGTGGCAGGGGCTGATACTCAGCCGGGCCAGGGTGCTCTCCTGTTAACCATAACCAAGCTCACAGGACATGGGATGAGCCCACTGTGTGACACAGGGAGCGGGACACAGTCTGTTAAGTCTTGCACAGCCATGCTCTGCCAC MAHSPVQSGLPGMQ|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7609 LATS2::RB1 ENSG00000150457.9::ENSG00000139687.16 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1328 TRUE 516 LATS2 ENSG00000150457.9 protein_coding - - chr13:20973036-21061586:- chr13:21045685:- chr13:21547175-21635725:- chr13:21619824:- RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48530084:+ chr13:48877880-49173572:+ chr13:49104220:+ chr13:20997346,chr13:20997348 chr13:48499330,chr13:48499328 NA NA chr13:21571485,chr13:21571487 chr13:49073466,chr13:49073464 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none none none 15 5 7 327 73 ENST00000382592.5 unknown upstream upstream duplicates(3),mismappers(6),mismatches(3) CAGCCATCCAAGTCTTCGGTTCAGGGGCTACCCGCAGGACCAAACAGTGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAAAGATGCCACCAGGCAGCAGCAGCAGATGAGAGCCACCCCAAAGTTCGGACCTTATCAGAAAGCCTTGAGGGAAATCAGATATTCCTTGTTGCCTTTTGCTAATGAATCGGGCACCTCTGCAGCTGCAGAAGTGAACCGGCAAATGCTGCAGGAACTGGTGAACGCAGGATGCGACCAG|AGACAGAGTTTTGCCATGTTGTCCCGGCTGGTCTCTAACTCCTGGGCTCAAGAACATTTGACTGCCTTGGTCTCCCCCAAAGCGCTGGGATTACAGG QPSKSSVQGLPAGPNSDTSLDAKVLGSKDATRQQQQMRATPKFGPYQKALREIRYSLLPFANESGTSAAAEVNRQMLQELVNAGCDQ|rqsfamlsrlvsnswaqehltalvspkalglq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase LATS2 AGC NDR Q9NRM7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE large tumor suppressor kinase 2 1 Yes malignant mesothelioma epithelial TSG large_deletion, frameshift, nonsense TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 7610 LATS2::RB1 ENSG00000150457.9::ENSG00000139687.16 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1328 TRUE 516 LATS2 ENSG00000150457.9 protein_coding - - chr13:20973036-21061586:- chr13:21045685:- chr13:21547175-21635725:- chr13:21619824:- RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48599302:+ chr13:48877880-49173572:+ chr13:49173438:+ chr13:20997346,chr13:20997348 chr13:48499330,chr13:48499328 NA NA chr13:21571485,chr13:21571487 chr13:49073466,chr13:49073464 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 2 1 1 327 7 ENST00000382592.5 ENST00000643064.1 upstream upstream mismatches(1) CCAAAGTCCTGGGGAGCAAAGATGCCACCAGGCAGCAGCAGCAGATGAGAGCCACCCCAAAGTTCGGACCTTATCAGAAAGCCTTGAGGGAAATCAGATATTCCTTGTTGCCTTTTGCTAATGAATCGGGCACCTCTGCAGCTGCAGAAGTGAACCGGCAAATGCTGCAGGAACTGGTGAACGCAGGATGCGACCAG|GTGATCCTGCCTTATCCTGGAGAAAGAAATGTTATGCAAGAGGCCAAGAAGAAGCTAAAaAAACAAGCCATGATGGATTCCCATCTCAGCTTATTACCATTGGGACATGTCCTTTTTGTCCAATCACATTTCTACATGGCAGTACAGTCTTCATCAAACCTAAGCATTAAAAAAAAAGTTTTCTC KVLGSKDATRQQQQMRATPKFGPYQKALREIRYSLLPFANESGTSAAAEVNRQMLQELVNAGCDQ|vilpypgernvmqeakkklkkqammdshlsllplghvlfvqshfymavqsssnlsikkkvf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase LATS2 AGC NDR Q9NRM7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE large tumor suppressor kinase 2 1 Yes malignant mesothelioma epithelial TSG large_deletion, frameshift, nonsense TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 7611 LATS2::RCBTB2 ENSG00000150457.9::ENSG00000136161.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LATS2 ENSG00000150457.9 protein_coding - - chr13:20973036-21061586:- chr13:21045685:- chr13:21547175-21635725:- chr13:21619824:- RCBTB2 ENSG00000136161.13 protein_coding - + chr13:48488963-48533256:- chr13:48530084:+ chr13:49063099-49107392:- chr13:49104220:+ chr13:20997346,chr13:20997348 chr13:48499330,chr13:48499328 NA NA chr13:21571485,chr13:21571487 chr13:49073466,chr13:49073464 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 15 5 5 327 73 ENST00000382592.5 unknown upstream upstream duplicates(3),mismappers(6),mismatches(3) CAGCCATCCAAGTCTTCGGTTCAGGGGCTACCCGCAGGACCAAACAGTGACACTTCCCTGGATGCCAAAGTCCTGGGGAGCAAAGATGCCACCAGGCAGCAGCAGCAGATGAGAGCCACCCCAAAGTTCGGACCTTATCAGAAAGCCTTGAGGGAAATCAGATATTCCTTGTTGCCTTTTGCTAATGAATCGGGCACCTCTGCAGCTGCAGAAGTGAACCGGCAAATGCTGCAGGAACTGGTGAACGCAGGATGCGACCAG|AGACAGAGTTTTGCCATGTTGTCCCGGCTGGTCTCTAACTCCTGGGCTCAAGAACATTTGACTGCCTTGGTCTCCCCCAAAGCGCTGGGATTACAGG QPSKSSVQGLPAGPNSDTSLDAKVLGSKDATRQQQQMRATPKFGPYQKALREIRYSLLPFANESGTSAAAEVNRQMLQELVNAGCDQ|rqsfamlsrlvsnswaqehltalvspkalglq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase LATS2 AGC NDR Q9NRM7 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE large tumor suppressor kinase 2 1 Yes malignant mesothelioma epithelial TSG large_deletion, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 7612 ARID5B::LRRC20 ENSG00000150347.17::ENSG00000172731.15 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE TRUE 758 FALSE NA FALSE NA ARID5B ENSG00000150347.17 protein_coding + + chr10:61901684-62096944:+ chr10:61902413:+ chr10:63661443-63856703:+ chr10:63662172:+ LRRC20 ENSG00000172731.15 protein_coding - - chr10:70298970-70382650:- chr10:70301508:- chr10:72058726-72142406:- chr10:72061264:- chr10:61905327,chr10:61905331,chr10:61905335,chr10:61905342,chr10:61905365 chr10:70318865,chr10:70318865,chr10:70318865,chr10:70318865,chr10:70318865 NA NA chr10:63665086,chr10:63665090,chr10:63665094,chr10:63665101,chr10:63665124 chr10:72078621,chr10:72078621,chr10:72078621,chr10:72078621,chr10:72078621 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Leucine_rich_repeat(15%) |LRR_8(0%) 9 8 7 58 169 ENST00000681100.1 ENST00000395010.5 downstream downstream mismatches(4) TGGGTCGGCTCACCGTGTGGCTTGCACGGACCTTACATTTTCTACAAGGCTTTTCAATTCCACCTTGAAGGCAAACCAAGAATTTTGTCCCTTGGCGACTTTTTCTTTGTAAGATGTACGCCAAAGGATCCGATTTGCATAGCGGAGCTCCAGCTGTTGTGGGAAGAGAGGACCAGCCGGCAACTTTTATCCAGCTCTAAACTTTATTTCCTCCCAGAAGACACTCCCCAGGGCAGAAATAGCGACCATGGCGAG|ATGTGCCCGTGGAGAAGCTGGCCGCCATGCCAGCCTTGCGCAGCATCAACCTCCGCTTCAACCCACTCAACGCCGAGGTGCGCGTGATC?CCCCGCCGCTCATCAAGTTTGACATGCTCATGTCTCCGGAAGGCGCAAGAGCCCCCCTACCTTAGGCCACCCTCCTCATGCCCACCCAGCAAGGGaCAGAGGCCACAGGCCTGGAACCCTGGAAGGGAGGGAGGCCCATGG WVGSPCGLHGPYIFYKAFQFHLEGKPRILSLGDFFFVRCTPKDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGE|mcpwrswppcqpcaastsasthstprca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7614 CDC5L::ENSG00000272442 ENSG00000096401.8::ENSG00000272442.2 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC5L ENSG00000096401.8 protein_coding + + chr6:44387706-44450425:+ chr6:44422809:+ chr6:44355443-44418162:+ chr6:44390546:+ ENSG00000272442 ENSG00000272442.2 protein_coding + + chr6:44273194-44378957:+ chr6:44352726:+ chr6:44240931-44346694:+ chr6:44320463:+ chr6:44424509,chr6:44424498 chr6:44337193,chr6:44337179 NA NA chr6:44392246,chr6:44392235 chr6:44304930,chr6:44304916 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Myb-like_DNA-binding_domain(100%),pre-mRNA_splicing_factor_component(25%)| Myb_Cef(31%),Myb_DNA-bind_6(100%),Myb_DNA-binding(100%)|SASRP1(100%) 8 12 4 215 22 ENST00000371477.4 ENST00000505802.1 downstream upstream duplicates(1),mismatches(5) GTGACTTCTCAGGTGTAACTCCACAGCGACAAGTTGTACAGACTCCAAACACAGTTCTCTCTACTCCATTCAG___GACTCCTTCTAATGGAGCTGAAGGGCTGACTCCCCGGAGTGGAACAACTCCCAAACCAGTTATTAACTCTACTCCGGGTAGAACTCCTCTTCGAGACAAGTTAAACATTAATCCCGAGGATGGAATGGCAGACTATAGTGATCCCTCTTACGTGAAGCAGATG|GTGCTAATTGCAGTGATTTTCTGGAATCTAAGGGATGTTTTGCCAACACAACACCCTCTGGCAAAAGTGTCAGTTCCTCATCTTCaGTGGAAACAGGCCCAAGTGTCAGTGAGCCTCCTGGCCTCCCCAGAGTGTCTGCTTACGTAGA___CACCACTGCTGACTTGGATCGGAAACTCTCCTTCTCACATTCTGATCACTCCTCTGAAATGTCGTTGCCTGAAGTCCAAAAGGATAAATATCCTGAGGAATTCAGCCTG?T?AAGTTGCAGACGA___AAGAT?GGC DFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVINSTPGRTPLRDKLNINPEDGMADYSDPSYVKQM|vliavifwnlrdvlptqhplakvsvphlqwkqaqvsvsllaspecllt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7615 UGGT2::GRIK4 ENSG00000102595.22::ENSG00000149403.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE TRUE 760 FALSE NA FALSE NA UGGT2 ENSG00000102595.22 protein_coding - - chr13:95801580-96053482:- chr13:96053155:- chr13:96453834-96705736:- chr13:96705409:- GRIK4 ENSG00000149403.13 protein_coding + + chr11:120511746-120988906:+ chr11:120802693:+ chr11:120382455-120859615:+ chr11:120673402:+ chr13:96034983,chr13:96034988 chr11:120669864,chr11:120669859 NA NA chr13:96687237,chr13:96687242 chr11:120540573,chr11:120540568 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Thioredoxin-like_domain(1%)|Ligand-gated_ion_channel(100%),Ligated_ion_channel_L-glutamate-_and_glycine-binding_site(100%),Receptor_family_ligand_binding_region(100%) Thioredoxin_12(0%)|ANF_receptor(100%),Lig_chan(100%),Lig_chan-Glu_bd(100%),SBP_bac_3(100%) 13 5 4 602 19 ENST00000376747.8 ENST00000527524.8 upstream upstream duplicates(3),mismatches(2) GCCGGCCGAAGCGTGGCGGCCACAGACTGTGGGTACCGGGTCCGAGGGACTCGCGCTTTTCTCTCCGTGCCATGGCGCCAGCGAAAGCCACGAACGTGGTGCGGCTGCTACTAGGCTCCACAGCGCTGTGGCTTTCGCAGCTCGGCTCCGGGACGGTCGCCGCGTCCAAGTCGGTGACTGCCCACTTGGCCGCGAAGTGGCCCGAGACCCCGCTGCTGCTGGAGGCAAG|CTGCTATCTTGGACGACCCCATGGAGTGCAGCAGAGGGGAGCGGCTCTCCATCACCCTGGCCAAGAACCGCATCAACCGCGCTCCTGAGAGGCTGGGCAAGGCCAAGGTCGAAGTGGACATCTTTGAGCTTCTCAGAGACAGCGAGTACGAG MAPAKATNVVRLLLGSTALWLSQLGSGTVAASKSVTAHLAAKWPETPLLLEAs|cylgrphgvqqrgaalhhpgqephqprs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7617 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE TRUE 761 TRUE 1329 TRUE 517 TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87157406:+ chr11:86748886-87039866:+ chr11:86868448:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84251291:- chr11:83166055-85339379:- chr11:83962334:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(99%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(19%),SH3_domain(100%) TMEM135_C_rich(49%)|Guanylate_kin(100%),MAGUK_N_PEST(23%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 5 9 2 198 17 ENST00000305494.6 ENST00000706233.1 downstream downstream none GGCTTTGGTGCCGCTCTGCCAGCATCTTATGTGGCCATTCTCATTGAAAGAAAAAGCAG___GAGAGGGCTGCTCACAATTTATATGGCCAACTTG___GCCACAGAAACACTATTCAGAATGGGTGTAGCAAGAGGAACCATCACAACATTAAGAAATGGAGAA|GCCAGTCCTGCTCCTATAATTGTCAACACAGATACTTTGGACACAATTCCTTAT___GTCAATGGGACAGAAATTGAATATGAATTTGAAGAAATTACACTGGAGAGG___GGGAATTCTGGCCTGGGATTCAGTATTGCTGGGGGGACAGATAATCCCCA GFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGE|ASPAPIIVNTDTLDTIPYVNGTEIEYEFEEITLERGNSGLGFSIAGGTDNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7618 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1329 TRUE 517 TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87157406:+ chr11:86748886-87039866:+ chr11:86868448:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84163511:- chr11:83166055-85339379:- chr11:83874554:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(99%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(7%),SH3_domain(100%) TMEM135_C_rich(49%)|Guanylate_kin(100%),MAGUK_N_PEST(0%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 1 0 2 198 19 ENST00000305494.6 ENST00000706233.1 downstream downstream none GCTTTGGTGCCGCTCTGCCAGCATCTTATGTGGCCATTCTCATTGAAAGAAAAAGCAG___GAGAGGGCTGCTCACAATTTATATGGCCAACTTG___GCCACAGAAACACTATTCAGAATGGGTGTAGCAAGAGGAACCATCACAACATTAAGAAATGGAGAA|GTCAATGGGACAGAAATTGAATATGAATTTGAAGAAATTACACTGGAGAGG___GGGAATTCTGGCCTGGGATTCAGTATTGCTGGGGGGgCAGATAATCCCCACcTTGGA FGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGE|VNGTEIEYEFEEITLERGNSGLGFSIAGGaDNPHl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7619 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1329 TRUE 517 TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87157406:+ chr11:86748886-87039866:+ chr11:86868448:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84425253:- chr11:83166055-85339379:- chr11:84136296:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion high none N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(99%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(62%),SH3_domain(100%) TMEM135_C_rich(49%)|Guanylate_kin(100%),MAGUK_N_PEST(70%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 0 1 2 198 1 ENST00000305494.6 ENST00000706007.1 downstream downstream none GCTTTGGTGCCGCTCTGCCAGCATCTTATGTGGCCATTCTCATTGAAAGAAAAAGCAG___GAGAGGGCTGCTCACAATTTATATGGCCAACTTG___GCCACAGAAACACTATTCAGAATGGGTGTAGCAAGAGGAACCATCACAACATTAAGAAATGGAGAA|GTTGACTGTAGACTGACCCCAGGAAAATAAAATTCAG___gGCTACCTCACAGTATGCTGAGAAGCTGGGATGTGATGGTGAACATGGCCTATTCAGTACTCAACATTCAACAGTGTATGAGGAAG FGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGE|vdcrltpgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7620 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1329 TRUE 517 TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87091395:+ chr11:86748886-87039866:+ chr11:86802437:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84251291:- chr11:83166055-85339379:- chr11:83962334:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(91%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(19%),SH3_domain(100%) TMEM135_C_rich(22%)|Guanylate_kin(100%),MAGUK_N_PEST(23%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 0 2 0 272 17 ENST00000305494.6 ENST00000706233.1 downstream downstream none CAGCATCTTATGTGGCCATTCTCATTGAAAGAAAAAGCAG___GAGAGGGCTGCTCACAATTTATATGGCCAACTTG|GCCAGTCCTGCTCCTATAATTGTCAACACAGATACTTTGGA...TGGCCTGGGATTCAGTATTGCTGGGGGGACAGATAATCCCCACATTGGAGATGACCCTGGCATATTTATTACGAAGATTATACCAGGAGGTGCTGCAGCAGAGGATGG ASYVAILIERKSRRGLLTIYMANL|ASPAPIIVNTDTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7621 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1329 TRUE 517 TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87071615:+ chr11:86748886-87039866:+ chr11:86782657:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84251291:- chr11:83166055-85339379:- chr11:83962334:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none N-terminal_cysteine-rich_region_of_Transmembrane_protein_135(83%)|Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(19%),SH3_domain(100%) TMEM135_C_rich(14%)|Guanylate_kin(100%),MAGUK_N_PEST(23%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 0 1 0 229 17 ENST00000305494.6 ENST00000706233.1 downstream downstream none TCTACTCATGGACTCCTGGCTTTGGTGCCGCTCTGCCAGCATCTTATGTGGCCATTCTCATTGAAAGAAAAAGCAG|GCCAGTCCTGCTCCTATAATTGTCA...TCCCCACATTGGAGATGACCCTGGCATATTTATTACGAAGATTATACCAGGAGGTGCTGCAGCAGAGGATGGCAGACTCAG___GGTCAATGATTGTATCTTGC YSWTPGFGAALPASYVAILIERKSr|pvlll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7622 ELAVL1::GNG7 ENSG00000066044.15::ENSG00000176533.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1330 TRUE 518 ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7973559:- chr19:8023457-8070543:- chr19:8038443:- GNG7 ENSG00000176533.13 protein_coding - - chr19:2511219-2702694:- chr19:2609650:- chr19:2511217-2702692:- chr19:2609648:- chr19:7972999,chr19:7973012 chr19:2616002,chr19:2616010 NA NA chr19:8037883,chr19:8037896 chr19:2616000,chr19:2616008 NA NA sense sense stop-codon 3'UTR/splice-site intron deletion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(51%)|GGL_domain(100%) RRM_1(20%),RRM_5(99%)|G-gamma(100%) 3 2 10 115 25 ENST00000593807.1 unknown upstream downstream low_entropy(1),mismatches(1) CAAAGACGCCAACTTGTACATCAGCGGGCTCCCGCGGACCATGACCCAGAAaGACGTAGAAGACATGTTCTCTCGGTTTGGGCGGATCATCAACTCGCGGGTCCTCGTGGATCAGACTACAG___TTATTCCGCAAACGAGGACAGCACCAAAATGAGAAGACGTTGGCTTTGGTTTGAGGAGGCTGAGGAG|GCTGGAAGTCCAAGACGGTAACAGGTGGGACCCTGTCTGCTCTGGCACTCGGGACGTGGTGCGCAAACATCACTGCAATCCACCCAGCTGTCCTGCACAACGGGATTCCAGCAATGGCCAAAATAAGGCTCACGGAAGAGAGCCTGAGGTCCTCCAGCAAGTGAGCGGCTAAACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7623 ELAVL1::GNG7 ENSG00000066044.15::ENSG00000176533.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1330 TRUE 518 ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7973725:- chr19:8023457-8070543:- chr19:8038609:- GNG7 ENSG00000176533.13 protein_coding - - chr19:2511219-2702694:- chr19:2555188:- chr19:2511217-2702692:- chr19:2555186:- chr19:7972999,chr19:7973012 chr19:2616002,chr19:2616010 NA NA chr19:8037883,chr19:8037896 chr19:2616000,chr19:2616008 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(51%)|GGL_domain(100%) RRM_1(19%),RRM_5(99%)|G-gamma(100%) 0 1 0 987 11 ENST00000407627.7 ENST00000382159.8 upstream downstream mismappers(1) CTCGGTTTGGGCGGATCATCAACTCGCGGGTCCTCGTGGATCAGACTACAG|GGTGTACAGCAAGCTGTGATTCCTGGGAAAACTAAAAAAG___CTCTCTGAACAACGGGGCCCAGAGCTGATGGCAGACAATGTCAGCCACTAACAACATAGCCCAGGCCCGGAAGCTG RFGRIINSRVLVDQTT|gctascdswen* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7628 CLYBL::SORL1 ENSG00000125246.16::ENSG00000137642.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLYBL ENSG00000125246.16 protein_coding + + chr13:99606669-99909459:+ chr13:99773010:+ chr13:100258923-100561713:+ chr13:100425264:+ SORL1 ENSG00000137642.13 protein_coding + - chr11:121452314-121633763:+ chr11:121610442:- chr11:121323023-121504472:+ chr11:121481151:- chr13:99827979 chr11:121620060 NA NA chr13:100480233 chr11:121490769 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none HpcH/HpaI_aldolase/citrate_lyase_family(16%)| HpcH_HpaI(0%)| 3 2 2 120 9 ENST00000693071.1 unknown downstream downstream mismatches(1) GCGCGgCGGGAAGATGGCGCTACGTCTGCTGCGGAGGGCGGCGCGCGGAGCTGCGGCGGCGGCGCTGCTGAGGCT___GAAAGCGTCTCTAGCAGCTGATATCCCCAGACTTGGATATAGTTCCTCATCCCATCACAAGTACATCC...CGGAGGGCAGTGCTTTATGTACCTGGAAATGATGAAAAGAAAATAAAGAAGATTCCATCCCTGAATGTAGATTGTGCAGTGCTCGACTGTGAGGATGGAGTGGCTGCAAACAAAAAG|CGTCACATATGGCCAACTAAACAACTAGAAACCACTGGTGCTCTCAAAAAGACTGGAGCTCAAGCTAAGAGTCGAGGGGGCAAGGAGAAGTGGCCAAGGAAAAGACCCCTCTCAGTTCAACCAATGAGCGCCATGCTTGTCATCTGGAA...TCAGAAAATATTATTTAAACAACAACTTGCATATTAGACTCTCCACACATATGCCCCTTCTATAGACTGGGCAAGAGAGACTCAAAGGAGCAGATAAGATT RRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAANKK|rhiwptkqlettgalkktgaqaksrggkekwprkrplsvqpmsamlviw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4306 chr13:99643059-99643149:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7630 NALF1::TBC1D4 ENSG00000204442.4::ENSG00000136111.14 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NALF1 ENSG00000204442.4 protein_coding - - chr13:107163510-107867496:- chr13:107210584:- chr13:107815858-108519844:- chr13:107862932:- TBC1D4 ENSG00000136111.14 protein_coding - - chr13:75283503-75482169:- chr13:75362607:- chr13:75857639-76056305:- chr13:75936743:- chr13:107208419,chr13:107208421 chr13:75387999,chr13:75387998 NA NA chr13:107860767,chr13:107860769 chr13:75962135,chr13:75962134 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF3350)(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(69%),Rab-GTPase-TBC_domain(100%) |DUF3350(100%),PID(9%),RabGAP-TBC(100%) 1 3 2 8 189 ENST00000375915.4 ENST00000377636.8 upstream downstream none TGTTCCCAGTATTTTGAAGTCACACAGTTTAACTGCAGAAAGACAATTCCTTGCAAGCAATACTGTTTGGAGGTTCAGACGAGGTGTCCATTTATATTGCCCGACAATGATGAAGTCATCTACGGAGGCCTCTCCAGTTTCATCTGTACAG|GTTCCTGATGTTATTAGCAGCATAAGGCAATTATCTAAAGCGGCCATGAAAGAGGATGCCAAACCCAGCAAAGATAATGAGGACGCCTTTTACAACTCTCAGAAGTTCGAAGTCCTGTACTGTGGAAAGGTGACCGTGcCCCACAAGAAGGCCCCCTCAAGCCTCATCGATGACTGCATGGAGAAGTTCAtCCTGCACGAACAGCAGCGCCTGAAGATCCAAGGcGAGCAGCGCGGTCCGGACCCAGGAGAGGACCTGGCTGACT CSQYFEVTQFNCRKTIPCKQYCLEVQTRCPFILPDNDEVIYGGLSSFICT|gs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1267 chr13:107531171-107531248:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7641 HS6ST3::GPC6 ENSG00000185352.10::ENSG00000183098.12 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HS6ST3 ENSG00000185352.10 protein_coding + + chr13:96090107-96839562:+ chr13:96091569:+ chr13:96742361-97491816:+ chr13:96743823:+ GPC6 ENSG00000183098.12 protein_coding + - chr13:93226807-94408020:+ chr13:94315590:- chr13:93879060-95060274:+ chr13:94967844:- chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350,chr13:96641350 chr13:94321786,chr13:94321789,chr13:94321797,chr13:94321806,chr13:94321809,chr13:94321761,chr13:94321763,chr13:94321762,chr13:94321764,chr13:94321785 NA NA chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604,chr13:97293604 chr13:94974040,chr13:94974043,chr13:94974051,chr13:94974060,chr13:94974063,chr13:94974015,chr13:94974017,chr13:94974016,chr13:94974018,chr13:94974039 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Sulfotransferase_family(35%)| Sulfotransfer_2(0%)| 1 2 0 260 81 ENST00000376705.4 unknown downstream downstream inconsistently_clipped(1) GCGGGCTGCACGCCGACTGGACGGAGCTCACCAACTGCGTGCCGGCCATCATGGAGAAGAAGGACTGTCCCCGCAACCACAGCCACACCAG|GAACATATGTCCCTGACTTCCTGATGGCTTGATAATGTGACTTGCTTTGGCCAATGAGATGTGATCAGTATGATGTGACCCTTCCAG___CTCTATCTCTCATAAGCATGAACATCACATTTGGGAGTTGTGGTGCAAATATCTCAGACAGCTAAGAGAAAATATTGT GLHADWTELTNCVPAIMEKKDCPRNHSHTr|nicp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7674 EHMT1::COL5A1 ENSG00000181090.21::ENSG00000130635.17 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 762 FALSE NA FALSE NA EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137744090:+ chr9:140513444-140764468:+ chr9:140638542:+ COL5A1 ENSG00000130635.17 protein_coding + + chr9:134641803-134844843:+ chr9:134750542:+ chr9:137533649-137736689:+ chr9:137642388:+ chr9:137749092,chr9:137749093 chr9:134740932,chr9:134740930 NA NA chr9:140643544,chr9:140643545 chr9:137632778,chr9:137632776 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Collagen_triple_helix_repeat_(20_copies)(88%),Fibrillar_collagen_C-terminal_domain(100%) |COLFI(100%),Collagen(66%) 66 56 81 793 286 ENST00000460843.6 ENST00000371817.8 downstream upstream duplicates(7),low_entropy(2),mismappers(1),mismatches(23) ATTAAAACAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACTGTGGGTTCCAAG___GGGGAGAAGGACCTGGGCGCCAGCAGCCTGCACGTGAATGGGGAGAGCCTGGAGATGGACTCGGATGAGGACGACTCAGAGGAGCTCGAGGAGGACGACGGCCATGGcGCAGAGCAGGCGGCCGCGTTCCCCACAGAGGACAGCAGGACTTCCAAGGAGAGCATGTCGGAGGCTGATCGCGCCCAGAAG|GGCCCCCCTGGACGCCCAGGCCTTCCTGGGGCCGATGGCCTGCCCGGTCCTCCAGGAACCATGCTCATGCTGCCC___TTCCGGTTTGGAGGTGGCGGCGATGCGGGCTCCAAAGGCCCCATGGTCTCAGCCCAGGAGTCCCAGGCGCAAGCCATTCTCCAGCAGGCCAGG___TTGGCACTGAGGGGACCAGCTGGCCCGATGGGTCTCACAGGGAGACCTGGCCCTGTG___GGTCCCCCTGGGAGCGGAGGTTTGAAGGGCGAGCCGG LKQRTVIEMFKSITHSTVGSKGEKDLGASSLHVNGESLEMDSDEDDSEELEEDDGHGAEQAAAFPTEDSRTSKESMSEADRAQK|GPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7676 CHKA::PPFIA1 ENSG00000110721.12::ENSG00000131626.19 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 763 TRUE 1339 TRUE 519 CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68061953:- chr11:67820326-67888911:- chr11:67829420:- PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70382088:+ chr11:70116796-70231418:+ chr11:70228194:+ chr11:68058383,chr11:68058388 chr11:70381741,chr11:70381736 NA NA chr11:67825850,chr11:67825855 chr11:70227847,chr11:70227842 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Choline/ethanolamine_kinase(100%)| APH(100%),Choline_kinase(100%),EcKL(100%)| 19 40 29 474 1041 ENST00000265689.9 ENST00000253925.12 upstream upstream duplicates(4),mismatches(13) CGGAAGTATCCCACCAAGAAACAACAG___CTCCATTTTATTTCCAGTTACTTGCCTGCATTCCAAAATGACTTTGAAAACCTCAGTACTGAAGAAAAATCCATTATAAAAGAAGAAATGTTGCTTGAAGTTAATAG___GTTTGCCCTTGCATCTCATTTCCTCTGGGGACTGTGGTCCATTGTACAAGCCAAGATTTCATCTATTGAATTTGGGTACATG|GCAATGTATCAGGAACACAGAGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAAAGTCTCCTGTTG___TTTACCCACACTACTTCTACAGATGATTATGCAGCATTTGAATCCAACAAAGACTACATTTTGGAATCCAGTGGAATCTTTAATCTTGTTAATACTTG RKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYM|amyqehrgwillqsgltpakvscclptlllqmimqhlnptkttfwnpveslillil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7677 CHKA::PPFIA1 ENSG00000110721.12::ENSG00000131626.19 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1339 TRUE 519 CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68061600:- chr11:67820326-67888911:- chr11:67829067:- PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70382088:+ chr11:70116796-70231418:+ chr11:70228194:+ chr11:68058383,chr11:68058388 chr11:70381741,chr11:70381736 NA NA chr11:67825850,chr11:67825855 chr11:70227847,chr11:70227842 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion high none Choline/ethanolamine_kinase(100%)| APH(100%),Choline_kinase(100%),EcKL(100%)| 1 1 31 98 1041 ENST00000525155.5 ENST00000253925.12 upstream upstream duplicates(1),mismatches(2) GTCCATTGTACAAGCCAAGATTTCATCTATTGAATTTGGGTACATG___TACCCGAATGTGGTGACCTGGTGGCATCAGGACAGTGTGGCTCAGCCCAGGAAGCCGGGGGAGAAGCCGCTGTCACTGATGCTGTGGTTGCCTTTGGAGGTTGCCCTCACTTCCAGGCCAGCTGACCTTG...GTCCCTTCTGACACGGGACA|GCAATGTATCAGGAACACAGAGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAAAGTCTCCTGTTG___TTTACCCACACTACTTCTACAGATGATTATGCAGCATTTGAATCCAACAAAGACTACATTTTGGAATCCAGTGGAATCTTTAATCTTGTTAATAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7684 PPARD::MKRN6P ENSG00000112033.14::ENSG00000227154.4 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1341 TRUE 520 PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35347150:+ chr6:35310335-35395968:+ chr6:35314927:+ MKRN6P ENSG00000227154.4 unprocessed_pseudogene + + chr6:35443044-35449847:+ chr6:35445963:+ chr6:35410821-35417624:+ chr6:35413740:+ chr6:35396807,chr6:35396803 chr6:35443585,chr6:35443578 NA NA chr6:35364584,chr6:35364580 chr6:35411362,chr6:35411355 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none none none 29 11 34 756 219 ENST00000448077.6 ENST00000436521.2 downstream upstream duplicates(3),mismatches(16) GGAGAATTCTGCGGAGCCTGCGGGACGGCGGCGGTGGCGCCGTAGGCAGCCGGGACAG___TGTTGTACAGTGTTTTGGGCATGCACGTGATACTCACACAGTGGCTTCTGCTCACCAACAGATGAAGACAGATGCACCAACGAG|CTGCTGACAGGGATCACGGCCACTCCCAGGAGTCTCTGCCAAAGTTCCACCTTGTCCGAGAGCTCATGGCGCCACTTCAGAGCCTGGACCTTGAGGTGCAGCAGGTTGTGG___GGCGTGTCCACAGTGCCGTGTCCATTCCAGCTACATCATCCCCCACAAGTTCTGGGTGAGCAAGGGGGCCCAGAAGG MHQR|aadrdhghsqeslpkfhlvrelmaplqsldlevqqvvgrvhsavsipatssptssg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7685 PPARD::MKRN6P ENSG00000112033.14::ENSG00000227154.4 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1341 TRUE 520 PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35347150:+ chr6:35310335-35395968:+ chr6:35314927:+ MKRN6P ENSG00000227154.4 unprocessed_pseudogene + + chr6:35443044-35449847:+ chr6:35449766:+ chr6:35410821-35417624:+ chr6:35417543:+ chr6:35396807,chr6:35396803 chr6:35443585,chr6:35443578 NA NA chr6:35364584,chr6:35364580 chr6:35411362,chr6:35411355 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none none none 9 5 7 756 224 ENST00000448077.6 ENST00000436521.2 downstream upstream duplicates(1),mismatches(4) AGCGGGAGAATTCTGCGGAGCCTGCGGGACGGCGGCGGTGGCGCCGTAGGCAGCCGGGACAG___TGTTGTACAGTGTTTTGGGCATGCACGTGATACTCACACAGTGGCTTCTGCTCACCAACAGATGAAGACAGATGCACCAACGAG|CCAGATCCGATGCCGGTTCTTCGTGCGAGGGAATGGCCGCTGCCCCTTCAAATCTGAGTGTATCTACCTGCACCAGCTCCCAGCTAAGGCTGGGACCTCCGGTCCTCCCTGGCCTGAGAGAGTGCAACTGGCCTCTGGGAGTGAGG...___GTGCTGGGCCCAGCATTGTTCCTAAGGGGTGCTGAGCCAGAGGACAATGTGCTCTTCAC MHQR|arsdagsscegmaaapsnlsvstctssqlrlgppvlpglrecnwplgv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7686 PPARD::MKRN6P ENSG00000112033.14::ENSG00000227154.4 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1341 TRUE 520 PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35347150:+ chr6:35310335-35395968:+ chr6:35314927:+ MKRN6P ENSG00000227154.4 unprocessed_pseudogene + + chr6:35443044-35449847:+ chr6:35446479:+ chr6:35410821-35417624:+ chr6:35414256:+ chr6:35396807,chr6:35396803 chr6:35443585,chr6:35443578 NA NA chr6:35364584,chr6:35364580 chr6:35411362,chr6:35411355 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none none none 2 2 13 756 220 ENST00000448077.6 ENST00000436521.2 downstream upstream duplicates(2),mismatches(7) GGAAAAGTTTTGGCAGGAGCGGGAGAATTCTGCGGAGCCTGCGGGACGGCGGCGGTGGCGCCGTAGGCAGCCGGGACAG___TGTTGTACAGTGTTTTGGGCATGCACGTGATACTCACACAGTGGCTTCTGCTCACCAACAGATGAAGACAGATGCACCAACGAG|GGCGTGTCCACAGTGCCGTGTCCATTCCAGCTACATCATCCCCCACAAGTTCTGGGTGAGCAAGGGGGCCCAGAAGGAGCAACTCATCAGGAACTTCAAGGCTCGGACCAG___CCAGATCCGATGCCGGTTCTTCGTGCGAGGGAATGGCCGCTGCCCCTTCAAATCTGAG MHQR|grvhsavsipatssptssg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7687 ST7::PRKAG2 ENSG00000004866.22::ENSG00000106617.16 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 765 FALSE NA FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151675637:- chr7:151253210-151574299:- chr7:151372723:- chr7:117033106,chr7:117033104,chr7:117033117,chr7:117033071,chr7:117033137,chr7:117033065,chr7:117033073,chr7:117033077,chr7:117033080,chr7:117033091,chr7:117033097,chr7:117033085,chr7:117033101,chr7:117042732,chr7:117042733,chr7:117042718,chr7:117042727 chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151855085,chr7:151855085,chr7:151855085,chr7:151855085 NA NA chr7:116673160,chr7:116673158,chr7:116673171,chr7:116673125,chr7:116673191,chr7:116673119,chr7:116673127,chr7:116673131,chr7:116673134,chr7:116673145,chr7:116673151,chr7:116673139,chr7:116673155,chr7:116682786,chr7:116682787,chr7:116682772,chr7:116682781 chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151552170,chr7:151552170,chr7:151552170,chr7:151552170 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none ST7_protein(5%)|CBS_domain(100%) ST7(0%)|CBS(100%) 27 14 20 188 61 ENST00000393446.6 ENST00000652321.2 downstream downstream duplicates(1),low_entropy(4),mismatches(8) GCAGCAGAGAGGAGCGCTGAAACATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAG|CCTCCGGCCTCTCCTCCTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACACGTTTCCCCTGGAATCCTATAAGCACGAGCCTGAACGGTTAGAGAATCGCATCTATGCCTCGTCTTCCCCCCCGGACACAGGGCAGAGGTTCTGCCCGTCTTCCTTCCAGAGCCCGACCAGGCCTCCACTGGCATCACCGACACACTATGCTCCCTCCAAAGCC___GCGGCGCTGGCGGCGGCCCTGGGACCCGCGGAAGCCGGCATGCTGGAGAA MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLST|aSGLSSSPSTPTQVTKQHTFPLESYKHEPERLENRIYASSSPPDTGQRFCPSSFQSPTRPPLASPTHYAPSKAAALAAALGPAEAGMLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7688 PRKAG2::ST7 ENSG00000106617.16::ENSG00000004866.22 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1342 TRUE 521 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151876507:- chr7:151253210-151574299:- chr7:151573592:- ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117099762:+ chr7:116593292-116870230:+ chr7:116739816:+ chr7:151688388,chr7:151688368,chr7:151688427,chr7:151688413,chr7:151688389,chr7:151688387 chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045 NA NA chr7:151385474,chr7:151385454,chr7:151385513,chr7:151385499,chr7:151385475,chr7:151385473 chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |ST7_protein(93%) |ST7(55%),TPR_6(100%) 2 1 0 7 129 ENST00000652321.2 ENST00000393446.6 upstream upstream mismatches(1) GGAAAGGACGCTTGAATTCGGCGCTTCGGCGGCGGCGGCGGCCGCGCGAGTTCCCTGCTCACCCTCCCTCTCCGCGGAAGTCCCCACGAcGTGGCTTCAGG...GGCAGCGGCCGGGGGAGGGAAGGAGGGGACCGAACCCCCGAGGAGTTTCGCAGAATCAACTTCTGGTTAGAGTTATGGGAAGCGCGGTTATGGACACCAAGAAGAAAAAAGATGTTTCCAGCCCCGGCGGGAGCGGCGGCAAGAAAAATGCCAGCCAGAAGAGGCGTTCGCTGCGCGTGCACATTCCG|TGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAG...CAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAG___AATGCAAAGTATGGCGAAATCCACTAAATTTAT MGSAVMDTKKKKDVSSPGGSGGKKNASQKRRSLRVHIP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7689 PRKAG2::ST7 ENSG00000106617.16::ENSG00000004866.22 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1342 TRUE 521 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151876507:- chr7:151253210-151574299:- chr7:151573592:- ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117119561:+ chr7:116593292-116870230:+ chr7:116759615:+ chr7:151688388,chr7:151688368,chr7:151688427,chr7:151688413,chr7:151688389,chr7:151688387 chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045 NA NA chr7:151385474,chr7:151385454,chr7:151385513,chr7:151385499,chr7:151385475,chr7:151385473 chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |ST7_protein(88%) |ST7(49%),TPR_6(100%) 1 0 0 7 56 ENST00000652321.2 ENST00000393446.6 upstream upstream none TTTCGCAGAATCAACTTCTGGTTAGAGgTATGGGAAGCGCGGTTATGGACACCAAGAAGAAAAAAGATGTTTCCAGCCCCGGCGGGAGCGGCGGCAAGAAAAATGCCAGCCAGAAGAGGCGTTCGCTGCGCGTGCACATTCCG|ATATTTGAATGGTGGTATTTTCGCAAATACGG MGSAVMDTKKKKDVSSPGGSGGKKNASQKRRSLRVHIP|IFEWWYFRKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7690 STX18-AS1::NOD2 ENSG00000247708.8::ENSG00000167207.15 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 766 FALSE NA FALSE NA STX18-AS1 ENSG00000247708.8 lncRNA + + chr4:4542131-4787359:+ chr4:4544907:+ chr4:4543858-4789086:+ chr4:4546634:+ NOD2 ENSG00000167207.15 protein_coding + + chr16:50693588-50733077:+ chr16:50731747:+ chr16:50727499-50766988:+ chr16:50765658:+ chr4:4575674,chr4:4575675,chr4:4575674 chr16:50730589,chr16:50730587,chr16:50730587 NA NA chr4:4577401,chr4:4577402,chr4:4577401 chr16:50764500,chr16:50764498,chr16:50764498 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 11 5 18 89 25 ENST00000653097.1 ENST00000647318.2 downstream upstream low_entropy(1),mismatches(2) AGACAGATCAG___...GTGTTTTGATGTTGCTTGGCTCCTA___CAAACATTGAGTGGGCCAGACACTGTTCTGAAAAATACGCAGTCGACTTTTGAACAGCACAGGCTTGAACTGCATGCGGCCACTAATACTCGGACTTCCTTCTGCCTCTGCCATCCCTAAGACAGCAAGACCCACCCCTCCTGCTCCTCAGCCTACTCGATGTGATGATG|GCTCCGAGGGAACACTTTCTCTCTAGAGGAGGTTGACAAGCTCGGCTGCAGGGACACCAGACTCTTGCTTTGAAGTCTCCGGGAGGATGTTCGTCTCAGTTTGTTTGTGAGCAGGCTGTGAGTTTGGGCCCCAGAGGCTGGGTGACATGTGTTGGCAGCCTCTTCAAAATGAGCCCTGTCCTGCCTAAGGCTGAACTTGTTTTCTGGGAACACCATAGGTCACCTTTATTCTGGCAGAGGAGGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7695 CPEB3::IDE ENSG00000107864.15::ENSG00000119912.18 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 767 FALSE NA FALSE NA CPEB3 ENSG00000107864.15 protein_coding - - chr10:92046692-92291078:- chr10:92290926:- chr10:93806449-94050835:- chr10:94050683:- IDE ENSG00000119912.18 protein_coding - - chr10:92451684-92574096:- chr10:92454539:- chr10:94211441-94333853:- chr10:94214296:- chr10:92253868,chr10:92253945,chr10:92253870,chr10:92253870 chr10:92455249,chr10:92455194,chr10:92455248,chr10:92455364 NA NA chr10:94013625,chr10:94013702,chr10:94013627,chr10:94013627 chr10:94215006,chr10:94214951,chr10:94215005,chr10:94215121 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 4 5 3 45 239 ENST00000265997.5 ENST00000265986.11 upstream downstream inconsistently_clipped(1),mismatches(2) CCCGCCCGGACCAACGCCTCCGCGCCTGCCGCCGTCTGGCCGGCGCCCTCCCGTTTCCTTCCTCCAGGGGGAAAAAATGTCTTTCGGGCCGCTTTCCAGGAAGCAGCAGGATGCGCCGCTCCACTGTCGGTAGCAACAAG|CCTGAAGTGATTCAGAACATGACCGAATTCAAGCGTGGTCTGCCACTGTTTCCCCTTGTGAAACCACATATTAACTTCATGGCTGCAAAACTCTGAAGATTCCCCATGCATGGGAAAGTGCAAGTGGATGCATTCCTGAGTCTTCCAGAGCCTAAGAAAATCATCTTGGCCACTTTAATAGTTTCTGATTCACTATTAGAGAAACAAACAAAAAATTGTCAAATGTCATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cytoplasmic polyadenylation element binding protein 3 2 lung cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 7696 RPL31P46::ZMAT4 ENSG00000241170.3::ENSG00000165061.15 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1343 TRUE 522 RPL31P46 ENSG00000241170.3 transcribed_processed_pseudogene + + chr11:74876286-74920022:+ chr11:74876977:+ chr11:74587331-74631067:+ chr11:74588022:+ ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40533647:- chr8:40388109-40755352:- chr8:40391166:- chr11:74880447,chr11:74880448 chr8:40541471,chr8:40541470 NA NA chr11:74591492,chr11:74591493 chr8:40398990,chr8:40398989 NA NA sense sense unknown exon/splice-site intron translocation high none none none 1 2 9 44 8 ENST00000649255.1 ENST00000315769.11 downstream downstream mismatches(1) AAATGAGTAAGGGCTATTCATCCTACTCAGTCCCACTCCTACCTTATCAGATACTTTCAGTTATTTCTACTTTTCCTCTCGAGATTCGCTGTGAGATACTAGAACTTCTTTTTGATGCATACTTGTGGGAAGATTTTGATTATCCATGAGATTACAGTTGTAACTTCATAGACTCCCAAAGGGAAATTCTTG|ATCCTAAGAATATTCTATGACAGCACTGTTTTTGGAAAATGAAATTTCAACATATGCTCTGTGTTTCTAG___CCTGAAGAATAAGTAGTGAAAGCATCAATCAAGACATAAGAACAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7697 RPL31P46::ZMAT4 ENSG00000241170.3::ENSG00000165061.15 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 768 TRUE 1343 TRUE 522 RPL31P46 ENSG00000241170.3 transcribed_processed_pseudogene + + chr11:74876286-74920022:+ chr11:74876977:+ chr11:74587331-74631067:+ chr11:74588022:+ ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40532238:- chr8:40388109-40755352:- chr8:40389757:- chr11:74880447,chr11:74880448 chr8:40541471,chr8:40541470 NA NA chr11:74591492,chr11:74591493 chr8:40398990,chr8:40398989 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 2 2 5 44 44 ENST00000649255.1 ENST00000315769.11 downstream downstream none AAATGAGTAAGGGCTATTCATCCTACTCAGTCCCACTCCTACCTTATCAGATACTTTCAGTTATTTCTACTTTTCCTCTCGAGATTCGCTGTGAGATACTAGAACTTCTTTTTGATGCATACTTGTGGGAAGATTTTGATTATCCATGAGATTACAGTTGTAACTTCATAGACTCCCAAAGGGAAATTCTTG|CCTGAAGAATAAGTAGTGAAAGCATCAATCAAGACATAAGAACAAAACATTAGCATTTCTCTGCCGTGGAGAATTGCTTATCAACCACCAGAGGAGGCTTCTTTCTTGAACAATAAACATTTCTTATAAGGATTCACAGATTCACATACGACTGATCTTGATTTTTGGAAATGAATGAGGTTTCTTTTTTCTTTTTCCTTTTTTTAATTTTGGGGTAAGTTATGATATTTGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7701 LRP5::ENSG00000261070 ENSG00000162337.12::ENSG00000261070.1 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRP5 ENSG00000162337.12 protein_coding + + chr11:68312591-68449275:+ chr11:68365702:+ chr11:68080059-68216743:+ chr11:68133170:+ ENSG00000261070 ENSG00000261070.1 lncRNA - + chr11:69147228-69171564:- chr11:69169114:+ chr11:68914696-68939032:- chr11:68936582:+ chr11:68369398,chr11:68369396 chr11:69162663,chr11:69162658 NA NA chr11:68136866,chr11:68136864 chr11:68930131,chr11:68930126 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Coagulation_Factor_Xa_inhibitory_site(34%),Low-density_lipoprotein_receptor_repeat_class_B(23%)| FXa_inhibition(29%),Ldl_recept_b(36%)| 4 6 0 552 27 ENST00000294304.12 unknown downstream upstream mismatches(1) GCGCACTGGGGGGAAGAGGAAGGAGATCCTGAGTGCCCTCTACTCACCCATGGACATCCAGGTGCTGAGCCAGGAGCGGCAGCCTTTCT___TCCACACTCGCTGTGAGGAGGACAATGGCGGCTGCTCCCACCTGTGCCTGCTGTCCCCAAGCGAGCCTTTCTACACATGCGCCTGCCCCACGGGTGTGCAGCTGCAGGACAACGGCAGGACGTGTAAGGCAG|ATAAAACTTTATCATGGTATGCATGTACAGGAGACATGTATATAG___GTACCCACTGTCCTGATTTCCATCACCATAGATGAGTTTGGCCTGTTTTTGAATTTTGTATGAGAGAAACATACAGCATGTTCCcCTTTTCATGTCTGGCTTTGTCTCTTAGCATGGCGCCCATCAGGT RTGGKRKEILSALYSPMDIQVLSQERQPFFHTRCEEDNGGCSHLCLLSPSEPFYTCACPTGVQLQDNGRTCKA|dktlswyactgdmyigthcpdfhhhr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7725 PRKAG2::ENSG00000288635 ENSG00000106617.16::ENSG00000288635.1 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1346 TRUE 523 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151876507:- chr7:151253210-151574299:- chr7:151573592:- ENSG00000288635 ENSG00000288635.1 protein_coding + + chr7:116954391-117119719:+ chr7:117099762:+ chr7:116594445-116759773:+ chr7:116739816:+ chr7:151688388,chr7:151688368,chr7:151688427,chr7:151688413,chr7:151688389,chr7:151688387 chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045 NA NA chr7:151385474,chr7:151385454,chr7:151385513,chr7:151385499,chr7:151385475,chr7:151385473 chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none none none 2 0 0 7 129 ENST00000652321.2 ENST00000421345.5 upstream upstream mismatches(1) GGAAAGGACGCTTGAATTCGGCGCTTCGGCGGCGGCGGCGGCCGCGCGAGTTCCCTGCTCACCCTCCCTCTCCGCGGAAGTCCCCACGAcGTGGCTTCAGG...GGCAGCGGCCGGGGGAGGGAAGGAGGGGACCGAACCCCCGAGGAGTTTCGCAGAATCAACTTCTGGTTAGAGTTATGGGAAGCGCGGTTATGGACACCAAGAAGAAAAAAGATGTTTCCAGCCCCGGCGGGAGCGGCGGCAAGAAAAATGCCAGCCAGAAGAGGCGTTCGCTGCGCGTGCACATTCCG|TGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAG MGSAVMDTKKKKDVSSPGGSGGKKNASQKRRSLRVHIP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7726 PRKAG2::ENSG00000288635 ENSG00000106617.16::ENSG00000288635.1 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1346 TRUE 523 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151876507:- chr7:151253210-151574299:- chr7:151573592:- ENSG00000288635 ENSG00000288635.1 protein_coding + + chr7:116954391-117119719:+ chr7:117119561:+ chr7:116594445-116759773:+ chr7:116759615:+ chr7:151688388,chr7:151688368,chr7:151688427,chr7:151688413,chr7:151688389,chr7:151688387 chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045,chr7:117033045 NA NA chr7:151385474,chr7:151385454,chr7:151385513,chr7:151385499,chr7:151385475,chr7:151385473 chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099,chr7:116673099 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none none 1 0 0 7 56 ENST00000652321.2 ENST00000421345.5 upstream upstream none TTTCGCAGAATCAACTTCTGGTTAGAGgTATGGGAAGCGCGGTTATGGACACCAAGAAGAAAAAAGATGTTTCCAGCCCCGGCGGGAGCGGCGGCAAGAAAAATGCCAGCCAGAAGAGGCGTTCGCTGCGCGTGCACATTCCG|ATATTTGAATGGTGGTATTTTCGCAAATACGG MGSAVMDTKKKKDVSSPGGSGGKKNASQKRRSLRVHIP|IFEWWYFRKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7728 ST7-OT4::PRKAG2 ENSG00000214188.9::ENSG00000106617.16 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ST7-OT4 ENSG00000214188.9 lncRNA + + chr7:116953899-117098806:+ chr7:116955153:+ chr7:116593953-116738860:+ chr7:116595207:+ PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151675637:- chr7:151253210-151574299:- chr7:151372723:- chr7:117033106,chr7:117033104,chr7:117033117,chr7:117033071,chr7:117033137,chr7:117033065,chr7:117033073,chr7:117033077,chr7:117033080,chr7:117033091,chr7:117033097,chr7:117033085,chr7:117033101,chr7:117042732,chr7:117042733,chr7:117042718,chr7:117042727 chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151855085,chr7:151855085,chr7:151855085,chr7:151855085 NA NA chr7:116673160,chr7:116673158,chr7:116673171,chr7:116673125,chr7:116673191,chr7:116673119,chr7:116673127,chr7:116673131,chr7:116673134,chr7:116673145,chr7:116673151,chr7:116673139,chr7:116673155,chr7:116682786,chr7:116682787,chr7:116682772,chr7:116682781 chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151552170,chr7:151552170,chr7:151552170,chr7:151552170 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |CBS_domain(100%) |CBS(100%) 1 0 0 2 61 ENST00000471110.5 ENST00000652321.2 downstream downstream none GAATTGTCTCACCATTTGAATAGGTGCTGCTCAGCCCTTTTGAGTCTGTCATCGGAAAGACCATGGCTTTCTCGCTTTTCATCTTTTTGGcTGGCTGCTTGTCtCAATATTGTCTTCTTCGCTTTAGACAA|CCTCCGGCCTCTCCTCCTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACACGTTTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7729 SAE1::ZC3H4 ENSG00000142230.13::ENSG00000130749.10 CALU1 SRR8615533 SRR8639193 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SAE1 ENSG00000142230.13 protein_coding + + chr19:47113274-47210636:+ chr19:47155213:+ chr19:47616531-47713893:+ chr19:47658470:+ ZC3H4 ENSG00000130749.10 protein_coding - + chr19:47064187-47113776:- chr19:47104631:+ chr19:47567444-47617033:- chr19:47607888:+ chr19:47156591 chr19:47103757 NA NA chr19:47659848 chr19:47607014 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none ThiF_family(60%)| ThiF(30%)| 37 57 39 2631 172 ENST00000413379.7 unknown downstream upstream duplicates(37),mismatches(8) GTCTGACTTGCTGCTCCAGGGATGTCATAGTTAAAGTTGACCAGATCTGTCACAAAAATAGCATCAAGTTCTTTACAGGAGATGTTTTTGGCTACCATGGATACACATTTGCCAATCTAGGAGAGCATGAGTTTGTAGA___GGAGAAAACTAAAGTTGCCAAAGTTAGCCAAGGAGTAGAAGATGGGCCCGACACCAAGAGAGCAAAACTTGATTCTTCTGAGACAACGATGGTCAAAAAG|GGTTTCCAAATAAGCTTGAAAGTGATGGATGCACAGACTGAACAGAGGAGACAGGCCCTGCCTCGGATGCAGCCCACCCGTGTGGCCCACAAGCTTCAGTTACTGTGACTGCTCTCGTTCCCCGTGGAGTGGCAGGGCCTGCCTGGAATCCCAAGGAAACCTAAGCCCTGGTGTCTGTTAGGAAAATGAGGAGGGCAATAATCCAAGCCACCTGCAACAGACTTTTGGCCAAGCGACACTAGCGTCTGGGCCCAGCTCCCTCGGTTAGGCCATAGCAGGGATGTAATGGCCATGAT LTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKK|gfqislkvmdaqteqrrqalprmqptrvahklqll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7730 GPR180::GPC6 ENSG00000152749.8::ENSG00000183098.12 CALU1 SRR8615533 SRR8639193 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 770 TRUE 1347 FALSE NA GPR180 ENSG00000152749.8 protein_coding + + chr13:94601857-94634661:+ chr13:94612390:+ chr13:95254111-95286915:+ chr13:95264644:+ GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:94286349:+ chr13:93879060-95060274:+ chr13:94938603:+ chr13:94613874 chr13:94285861 NA NA chr13:95266128 chr13:94938115 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Rhodopsin-like_GPCR_transmembrane_domain(10%)|Glypican(47%) GpcrRhopsn4(0%),Lung_7-TM_R(0%)|Glypican(9%) 7 8 17 240 290 ENST00000376958.5 ENST00000377047.9 downstream upstream duplicates(7),low_entropy(1),mismatches(1) AGCCCAGGAATGGCTAAAGCTACAGCAAAGCAGTCATGGTTATAGCTGTAGTGAAAAATTATCCAAAGCTCAGTTGACAA___TGACCATGAACCAGACCGAACATAATCTGACAGTGTCCCAGATTCCGTCTCCACAAACGTGGCATGTGTTTTATGCAGACAAGTATACATGCCAAGATGACAAGGAGAATTCTCAGGTGGAAGATATCCCATTTGAAATGGTGTTACTAAACCCAGATGCCGAAGGGAATCCATTTGATCATTTTAGTGCTGGAGAATCTG|ATGCAATGCTCTTGGTGGCAGAGCGACTGGAGGGGCCATTCAACATTGAGTCGGTCATGGACCCGATAGATGTCAAGATTTCTGAAGCCATTATGAACATGCAAGAAAACAGCATGCAGGTGTCTGCAAAG___GTCTTTCAGGGATGTGGTCAGCCCAAACCTGCTCCAGCCCTCAGATCTGCCCGCTCAGCTCCTGAAAATTTTAATACACGTTTCAGGCCCTACAATCCTGAGGAAAGACCAACAACTGCTGCAGGCACAAGCTTGGACCGGCTG___GTCACAGACATAAAAGAGAAATTGAAGCTCTCTAAAAAGGTCTGGTCAGCATTACCCTACACTATCTGCAAGGACGAGAGCGTGACAGCGGGCACGTCCAACGAGGAGGAATGCTG AQEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVSQIPSPQTWHVFYADKYTCQDDKENSQVEDIPFEMVLLNPDAEGNPFDHFSAGES|dAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPALRSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDESVTAGTSNEEEC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma SKIN no_match 95257803 FALSE 95034668 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7765 BAG6::NELFE ENSG00000204463.14::ENSG00000204356.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 773 FALSE NA FALSE NA BAG6 ENSG00000204463.14 protein_coding - - chr6:31639028-31652705:- chr6:31651656:- chr6:31606805-31620482:- chr6:31619433:- NELFE ENSG00000204356.14 protein_coding - - chr6:31952087-31959038:- chr6:31957010:- chr6:31919864-31926815:- chr6:31924787:- chr6:31650570,chr6:31650568,chr6:31650573 chr6:31957351,chr6:31957350,chr6:31957352 NA NA chr6:31618347,chr6:31618345,chr6:31618350 chr6:31925128,chr6:31925127,chr6:31925129 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ubiquitin_family(26%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) Rad60-SLD(2%),Ubiquitin_2(0%),ubiquitin(2%)|RRM_1(100%) 91 208 175 3278 4114 ENST00000211379.9 ENST00000375429.8 upstream downstream duplicates(150),inconsistently_clipped(4),mismatches(101),multimappers(31) CGGAAGTATCGCTTCGAGATCCCCAAATACTATCGGGGAAACGGAAGTGGCCGTCGGTGGCAG___AGACCTGTCGGCCATGGAGCCTAATGATAGTACCAGTACCGCTGTGGAGGAGCCTGACAGCTTGGAGGTGTTGGTGAAGACCTTGGACTCTCAAACTCGTACCTTTATTGTGGGGGCCCAG|AAAAAGGCATTGCTGGCTCTGAAGAAGCAAAGTAGCAGCAGCACAACCAGCCAAGGTGGTGTCAAACGCT___CACTATCAGAGCAGCCTGTCATGGACACAGCCACAGCAACAGAGCAGGCAAAGCAGCTGGTGAAGTCAGGAGCCATCAGTGCCATCAAGGCTGAGA MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQ|KKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1236 chr6:31956839-31956940:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7772 THADA::MTA3 ENSG00000115970.19::ENSG00000057935.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 774 TRUE 1353 TRUE 524 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43595931:- chr2:43457990-43823177:- chr2:43823070:- MTA3 ENSG00000057935.14 protein_coding + + chr2:42494569-42756947:+ chr2:42682401:+ chr2:42721709-42984087:+ chr2:42909541:+ chr2:43592846,chr2:43592852 chr2:42680076,chr2:42680070 NA NA chr2:43819985,chr2:43819991 chr2:42907216,chr2:42907210 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |GATA_zinc_finger(100%),MTA_R1_domain(100%),Myb-like_DNA-binding_domain(100%) |GATA(100%),MTA_R1(100%),Myb_DNA-binding(100%) 7 46 9 280 592 ENST00000405975.7 ENST00000405592.5 upstream upstream duplicates(8),mismatches(3) CGGTAGTCGACCGTGGACCGCGCTGCGAGCCTCGGAGACGCCGTAGAAGGAGACCTGCTTCCGGGACTGGACCAGGCGCCTGCGACTCTTCTCAGACGCCGACGTGCACGAG|TTTCACGCTATGGATACATTGTATAGACACAGCTATGATTTGAGCAGTGCCATTAGTGTCTTAGTACCACTCGGAGGACCTGTTTTATGCAGAGATGAAATGGAGGAATGGTCAGCCTCTGAAGCTAGCTTATTTGAAGAGGCACTGGAAAAATATGGCAAAGACTTCAATGACATACGGCAAGATTTT___CTTCCTTGGAAATCATTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAACAG___AAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7773 THADA::MTA3 ENSG00000115970.19::ENSG00000057935.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 775 TRUE 1353 TRUE 524 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43595647:- chr2:43457990-43823177:- chr2:43822786:- MTA3 ENSG00000057935.14 protein_coding + + chr2:42494569-42756947:+ chr2:42682401:+ chr2:42721709-42984087:+ chr2:42909541:+ chr2:43592846,chr2:43592852 chr2:42680076,chr2:42680070 NA NA chr2:43819985,chr2:43819991 chr2:42907216,chr2:42907210 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |GATA_zinc_finger(100%),MTA_R1_domain(100%),Myb-like_DNA-binding_domain(100%) |GATA(100%),MTA_R1(100%),Myb_DNA-binding(100%) 4 5 26 62 592 ENST00000405006.8 ENST00000405592.5 upstream upstream duplicates(9),mismatches(1) GCCAGTTTTGCTAGGGCTGCCTGGCGAGCCACACCAATTCCCATCCTTTGGTATCGCCAGGATTCGGCGGCTGTGAAACTGATTTCCGGTCGCTAAGGTCTCCATGGAGACAGCACTTTAACCACTTTCTCCCACTGTCATTCCTCGACTCCACGTGGTTCAGAAATCGCCCAGAGAATGTTTGTGGGAGTCAGCCAGGAAGGTGTAGAGTGAAGCAGCGTTCTAAAGGGAAGCA|TTTCACGCTATGGATACATTGTATAGACACAGCTATGATTTGAGCAGTGCCATTAGTGTCTTAGTACCACTCGGAGGACCTGTTTTATGCAGAGATGAAATGGAGGAATGGTCAGCCTCTGAAGCTAGCTTATTTGAAGAGGCACTGGAAAAATATGGCAAAGACTTCAATGACATACGGCAAGATTTT___CTTCCTTGGAAATCATTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7774 THADA::MTA3 ENSG00000115970.19::ENSG00000057935.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1353 TRUE 524 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43595931:- chr2:43457990-43823177:- chr2:43823070:- MTA3 ENSG00000057935.14 protein_coding + + chr2:42494569-42756947:+ chr2:42695765:+ chr2:42721709-42984087:+ chr2:42922905:+ chr2:43592846,chr2:43592852 chr2:42680076,chr2:42680070 NA NA chr2:43819985,chr2:43819991 chr2:42907216,chr2:42907210 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |GATA_zinc_finger(100%),MTA_R1_domain(100%),Myb-like_DNA-binding_domain(37%) |GATA(100%),MTA_R1(100%),Myb_DNA-binding(0%) 0 4 3 280 581 ENST00000405975.7 ENST00000405094.2 upstream upstream none CTTTGCCCTGACCCGGTAGTCGACCGTGGACCGCGCTGCGAGCCTCGGAGACGCCGTAGAAGGAGACCTGCTTCCGGGACTGGACCAGGCGCCTGCGACTCTTCTCAGACGCCGACGTGCACGAG|CTTCCTTGGAAATCATTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAACAG___AAACGTCTAAAAGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTATATATCCCAACCTA___CAGCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7775 PPFIBP1::ENSG00000291202 ENSG00000110841.14::ENSG00000291202.1 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27578239:+ chr12:27676364-27848497:+ chr12:27731172:+ ENSG00000291202 ENSG00000291202.1 lncRNA - + chr4:119405523-119454655:- chr4:119431103:+ chr4:120326678-120375810:- chr4:120352258:+ chr12:27633038 chr4:119416977 NA NA chr12:27785971 chr4:120338132 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 9 5 6 417 13 ENST00000537927.5 unknown downstream upstream duplicates(5),mismatches(1),multimappers(1) TGCTGGGGCTTTGAACTCCGAGAGGAGGTGGACCAGAACTTTTGGAACTAGTGCCGGCGGCTCTCCACCCCCCAG___TATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAAGATTTGAAGAACTGAAATAAATCAGCTTTAAACCTGCTTTTTAAAAAT|ACCGGCCAACACTCAGGGAAAACAGAAAAGAACCTACATGAAATATCGGGGTGAATTTCCCCCGATATCACACGGGCTCTTCTCTCACCTGTCTACCTGCTTAACTGCATAGGAGAGGCAATGCATGGTGCTCATGAACAAGGCAAGCATTGAAGTCAGACCAGACTAACATTTGACTCAGTCTTAATATTCAG___CTAAAGAAACCGGCTCAGAGAATGTTATTTGATTGGACCGTGTTGCATCTCTGGACAGTGCAGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7776 XBP1::ENSG00000226471 ENSG00000100219.17::ENSG00000226471.7 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XBP1 ENSG00000100219.17 protein_coding - - chr22:28794555-28800597:- chr22:28799057:- chr22:29190543-29196585:- chr22:29195045:- ENSG00000226471 ENSG00000226471.7 lncRNA + - chr22:28800683-28848559:+ chr22:28810934:- chr22:29196671-29244547:+ chr22:29206922:- chr22:28798680 chr22:28840961 NA NA chr22:29194668 chr22:29236949 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Basic_region_leucine_zipper(70%)| bZIP_1(39%),bZIP_2(40%),bZIP_Maf(39%)| 8 5 1 504 12 ENST00000216037.10 unknown upstream downstream duplicates(5),mismatches(1) GTGGTGGTGGCAGCCGCGCCGAACCCGGCCGACGGGACCCCTAAAGTTCTGCTTCTGTCGGGGCAGCCCGCCTCCGCCGCCGGAGCCCCGGCCGGCCAGGCCCTGCCGCTCATGGTGCCAGCCCAGAGAGGGGCCAGCCCGGAGGCAGCGAGCGGGGGGCTGCCCCAGGCGCGCAAGCGACAGCGCCTCACGCACCTGAGCCCCGAGGAGAAGGCGCTGAGGAG___GAAACTGAAAAACAGAGTAGCAGCTCAGACTGCCAGAGATCGAAAGAAGGCTCGAATGAGTGAGCTGGAACAGCAAGTGGTAGATTTAGAAGAAGAG|AAAGTGGTGGGCAGCCACAGGACCGAAGGAAACACCCGTCAACATAACCAAGAGGATTTCCTGCCCACACACTCAGCGTCTCAACGTTATTTGAACGGTTTGTAGATGTCTTTCTTTAGAAATATACTAATAAAATTGGAAA VVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEE|kvvgshrtegntrqhnqedflpthsasqrylngl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7777 KIZ::C9 ENSG00000088970.16::ENSG00000113600.12 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIZ ENSG00000088970.16 protein_coding + + chr20:21125983-21246622:+ chr20:21215648:+ chr20:21106624-21227260:+ chr20:21196286:+ C9 ENSG00000113600.12 protein_coding - + chr5:39284140-39371324:- chr5:39330326:+ chr5:39284242-39371426:- chr5:39330428:+ chr20:21224978,chr20:21224967 chr5:39329103,chr5:39329090 NA NA chr20:21205616,chr20:21205605 chr5:39329205,chr5:39329192 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 6 0 66 11 ENST00000619574.4 unknown downstream upstream duplicates(1) GGAACAAG___AAGTTTCAAGTGGCTGTGGAGACAAGAGCAAGAAAGAAAATGTGGCTGCAGATATCCCAATCACAG|GGTTATGGATAAGGGAAAGCAGTGCTTCCTTTCCAAACGTGGCTTCAAGATCAGTCCTGGGCAGCCCCTAGCCGTCACTATTCTATGTCGTACAAGTTATTACCCCTCTGGAGAAGCTAAGAGCTGATCACAGTGGTGAAGACAGGAAAACCGTAAAATGCAGACTAAACTCCAAACAAACTAAATCAACACAACAATAaCCCTTCTCCCATCAG EQEVSSGCGDKSKKENVAADIPIT|glwiressasfpnvasrsvlgsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7778 RALGAPA2::AFF3 ENSG00000188559.16::ENSG00000144218.21 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 776 TRUE 1354 TRUE 525 RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20712375:- chr20:20370174-20693287:- chr20:20693018:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99837524:- chr2:100161881-100808890:- chr2:100453986:- chr20:20708276,chr20:20708279 chr2:99850608,chr2:99850608 NA NA chr20:20688919,chr20:20688922 chr2:100467070,chr2:100467070 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(40%),AF4_interaction_motif(100%) |AF-4(58%),AF-4_C(100%),AF4_int(100%) 1 5 3 25 85 ENST00000202677.12 ENST00000672756.2 upstream downstream duplicates(1),low_entropy(1),mismatches(2) CGAGTGGCCCGCGCGACACGCGCCGGCCTCGACCCTATGCTTTGATTCGCGTGGCGCAGGCGCCTACTGCCCCGCCGGCGGGGCCCGGGCTTCC?GCCGCGGGATGTTCTCCCGAAGGAGCCACGGGGATGTGAAGAAGTCCACCCAGAAGGTGCTGGACCCGAAGAAGGACGTGCTGACCCGCCTGAAGCACCTGCGGGCGCTGCTGG|GAGAGTAGATCTGGAGAAACCAACAGCTGTGTTGAAGAAATAATCCGG___GAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCC...___GACTCTCAGCTTGTATCCTCTGGACACAATAATCCAA___AGAAAGGTGATGCAGAGCCAGAGAGTCCAGACAATGGCACATCGAATACATC MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALL|ge* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 7779 RALGAPA2::AFF3 ENSG00000188559.16::ENSG00000144218.21 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1354 TRUE 525 RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20712375:- chr20:20370174-20693287:- chr20:20693018:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99752301:- chr2:100161881-100808890:- chr2:100368763:- chr20:20708276,chr20:20708279 chr2:99850608,chr2:99850608 NA NA chr20:20688919,chr20:20688922 chr2:100467070,chr2:100467070 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(36%),AF4_interaction_motif(100%) |AF-4(37%),AF-4_C(100%),AF4_int(100%) 1 0 2 25 102 ENST00000202677.12 ENST00000672756.2 upstream downstream none GCGACACGCGCCGGCCTCGACCCTATGCTTTGATTCGCGTGGCGCAGGCGCCTACTGCCCCGCCGGCGGGGCCCGGGCTTCCTGCCGCGGGATGTTCTCCCGAAGGAGCCACGGGG...CCGAAGAgGGACGTGCTGcCCCGCCTGAAGCACCTGCGGGCGCTGCTGG|GAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCCATTTCCAAATAAG___GACTCTCAGCTTGTATCCTCTGGACACAATAATCCAA___AGAAAGGTGATGCAGAGCCAGAGAGTCCAG PKrDVLpRLKHLRALL|gddlasttfcysstwqsgtnqisisk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 7780 PEX7::MAP3K5-AS1 ENSG00000112357.14::ENSG00000234263.2 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1355 TRUE 526 PEX7 ENSG00000112357.14 protein_coding + + chr6:136822564-136913934:+ chr6:136845692:+ chr6:137143702-137235072:+ chr6:137166830:+ MAP3K5-AS1 ENSG00000234263.2 lncRNA + + chr6:136629066-136648198:+ chr6:136636931:+ chr6:136950204-136969336:+ chr6:136958069:+ chr6:136845811,chr6:136845812 chr6:136630008,chr6:136630006 NA NA chr6:137166949,chr6:137166950 chr6:136951146,chr6:136951144 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none WD_domain__G-beta_repeat(44%)| WD40(47%),eIF2A(44%)| 1 2 3 98 14 ENST00000318471.5 ENST00000432477.2 downstream upstream none GTGTATAGTGTTGATTGGAGCCAAACCAGAGGTGAACAGCTTGTGGTGTCTGGCTCATGGGATCAAACTGTCAAATTG|GTTCTCTGTGTAGCATATTAATGCCTGCCACAAGGGTGCTATCAACCAGAATCTTCAGTGAATCTTCTTTGTCTGAATTGCACATATCTCAGAGGAGAATAGAGAATGTGTAAGGACACCGTGGCCCATGCATTGACACTGTCATAGATAAAGCATAGTTACTCGCTATCAG___TTCTACCCACAGCCAAAGTCCAGGTTCCACCTCCTTTAGCAAGCCTTCTCGAAGGACTCCATGCCTCACTGATCTTCCTCCTCACTGAAC VYSVDWSQTRGEQLVVSGSWDQTVKL|vlcvay* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7781 PEX7::MAP3K5-AS1 ENSG00000112357.14::ENSG00000234263.2 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1355 TRUE 526 PEX7 ENSG00000112357.14 protein_coding + + chr6:136822564-136913934:+ chr6:136826469:+ chr6:137143702-137235072:+ chr6:137147607:+ MAP3K5-AS1 ENSG00000234263.2 lncRNA + + chr6:136629066-136648198:+ chr6:136636931:+ chr6:136950204-136969336:+ chr6:136958069:+ chr6:136845811,chr6:136845812 chr6:136630008,chr6:136630006 NA NA chr6:137166949,chr6:137166950 chr6:136951146,chr6:136951144 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none WD_domain__G-beta_repeat(26%)| WD40(0%),eIF2A(0%)| 1 0 3 117 14 ENST00000318471.5 ENST00000432477.2 downstream upstream mismatches(1) AGGCTGTGGAACCCTACTAATATTGGATCCAGATGAAGCTGGGCTAAGGCTTTTTAGAAG___CTTTGACTGGAATGATGGTTTGTTTGATGTGACTTGGAGTGAGAACAACGAACATGTCCTCATCACCTGTAGTGGCGATGGCTCGCTGCAGCTCTGGGACACTGCCAAAGCTGCAGGGCCACTGCAAGTCTATAAAGAACACGCTCAGGAG|GTTCTCTGTGTAGCATATTAATGCCTGCCACAAGGGTGCTATCAACCAGAATCTTCAGTGAATCTTCTTTGTCTGAATTGCACATATCTCAGAGGAGAATAGAGAATGTGTAAGGACACCGTGGCCCATGCATTGACACTGTCATAGATAAAGCATAGTTACTCGCTATCAG___TTCTACCCACAGCCAAAGTCCAGGTTCCACCTCCTTTAGCgAGCCTTCTCGAAGGAtTCCA GCGTLLILDPDEAGLRLFRSFDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYKEHAQE|vlcvay* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7784 DBT::VAV3 ENSG00000137992.15::ENSG00000134215.16 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 777 TRUE 1356 TRUE 527 DBT ENSG00000137992.15 protein_coding - - chr1:100186919-100249834:- chr1:100249770:- chr1:100652475-100715390:- chr1:100715326:- VAV3 ENSG00000134215.16 protein_coding - - chr1:107571161-107965180:- chr1:107779492:- chr1:108113783-108507802:- chr1:108322114:- chr1:100248515,chr1:100248519 chr1:107812195,chr1:107812196 NA NA chr1:100714071,chr1:100714075 chr1:108354817,chr1:108354818 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),RhoGEF_domain(100%),SH2_domain(100%),Variant_SH3_domain(100%) |C1_1(100%),CDC24(0%),CH(0%),PH(100%),RhoGEF(100%),SH2(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 35 0 89 60 ENST00000370132.8 ENST00000370056.9 upstream downstream duplicates(5) GGCTGCAGTCCGTATGCTGAGAACCTGGAGCAGGAATGCGGGGAAGCTG|GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAG___GCCCTTCCCAACAGAAGAAAGCATTAATGATGAAGACATCTACAAAGGCCTTCCTGATTTAATAGA___TGAAACCCTTGTGGAAGATGAAGAAGATCTCTATGACTGTGTTTATGGGGAAGATGAAGGTGGAGAAGTCTATGAGGACTTAATGAAGGCAGAGGAAGCACATCAGCCC___AAATGTCCAGAAAATGAT AAVRMLRTWSRNAGKL|VIETLSRLSRTPIALATGIRPFPTEESINDEDIYKGLPDLIDETLVEDEEDLYDCVYGEDEGGEVYEDLMKAEEAHQPKCPEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7785 DBT::VAV3 ENSG00000137992.15::ENSG00000134215.16 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1356 TRUE 527 DBT ENSG00000137992.15 protein_coding - - chr1:100186919-100249834:- chr1:100248899:- chr1:100652475-100715390:- chr1:100714455:- VAV3 ENSG00000134215.16 protein_coding - - chr1:107571161-107965180:- chr1:107779492:- chr1:108113783-108507802:- chr1:108322114:- chr1:100248515,chr1:100248519 chr1:107812195,chr1:107812196 NA NA chr1:100714071,chr1:100714075 chr1:108354817,chr1:108354818 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),RhoGEF_domain(100%),SH2_domain(100%),Variant_SH3_domain(100%) |C1_1(100%),CDC24(0%),CH(0%),PH(100%),RhoGEF(100%),SH2(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 0 0 10 60 ENST00000681780.1 ENST00000370056.9 upstream downstream none GGAAGCTG___ATGCTCCTGCCTTGGTGACCCCGATCTTACAAAAACTTTCAAGAGCCTGCTATGTACCAGTGCTGTGTTAGGCACTGGAGATACAAATATGAA...ACAAAGGAGAGGGAGACAGATAGAAATTACAACCCAGCATGAGAG|GTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7787 GULP1::LINC01090 ENSG00000144366.17::ENSG00000231689.3 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GULP1 ENSG00000144366.17 protein_coding + + chr2:188291669-188595931:+ chr2:188383889:+ chr2:189156396-189460658:+ chr2:189248616:+ LINC01090 ENSG00000231689.3 lncRNA - + chr2:187712816-188384365:- chr2:188244829:+ chr2:188577543-189249092:- chr2:189109556:+ chr2:188410837,chr2:188410829 chr2:188169835,chr2:188169824 NA NA chr2:189275564,chr2:189275556 chr2:189034562,chr2:189034551 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 9 1 3 252 15 ENST00000409830.6 unknown downstream upstream duplicates(6),mismatches(1) GGCAGCTCTCCACGCCCCTGCCCGAAGCCTGACCCGACTGCCTCTCTCAGTGAG___TTATTTATGATTCCATCTGATATACATAGGAGAGAAACTGATAGAAGAATTCTGATGGCAACTGTATGATAGAAGCTATATAAAGTCAAGTGTCCATTTTCTTTCAACTATATTTGAGCATACCCAG|AAGACTGAACATTTCCTGACAAGAAGATTAAAGAGACAGCTTTTATAAGGAAAAAATAGCAACTACAAAATCATCATCCTAAATTCATATCACTAAGAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-561 chr2:188297492-188297588:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7792 ASB8::HECTD4 ENSG00000177981.11::ENSG00000173064.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASB8 ENSG00000177981.11 protein_coding - - chr12:48147789-48181213:- chr12:48157459:- chr12:48541572-48574996:- chr12:48551242:- HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112319742:- chr12:112597992-112820243:- chr12:112757546:- chr12:48154418,chr12:48154420 chr12:112323089,chr12:112323088 NA NA chr12:48548201,chr12:48548203 chr12:112760893,chr12:112760892 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |HECT-domain_(ubiquitin-transferase)(100%) |HECT(100%) 0 5 0 110 48 ENST00000539503.5 ENST00000377560.9 upstream downstream duplicates(1) GCCTGCCCCCGACAGCTTCTGCTTCCGGGTCACGCCTTGACAGCGGCTTTCAACCCCCACCTCAGCCCAGCAATTCG|ATTTTAACCTTTGAGACCAAGAACCCGTCGGAATTAGCAGAACGTTTGCGCTCTGTTTGTGGGAATCAGAGCAATGCCTATGCCCGGCTGCTGGAATACCGCCTGAATGCCTTGCGAGGACTGTGGAATGCCCAGCGCCAGCTGGCCTTAGAAGAACAGCATGAAAGGGAAAGTTCAGGTGATGAGGAAACTTTGGCCCTGCTCAAACGCCAGGGCTTGTTGCAGCAACCTGAGCAAGCGCCCTTCACATCGAGGATGGGGCTCCTGCTGGTCTTCCCCCTTATTCAGTCCCAGAGTAGAACAGACCCCTCTCTCTGTAACATAACTGCTGAGGTGCT...AATTCAGAAGGtAGTCTGCCTTGCCATCAG___CTCTGGTTTAAATATCTTGTACCCAGGTGAAACTGAAATCAATAACTTACTTAAACTGGTCTTAACAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6861 chr12:112163258-112163321:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7793 MAP3K5::PEX7 ENSG00000197442.11::ENSG00000112357.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136637325:- chr6:136878184-137114235:- chr6:136958463:- PEX7 ENSG00000112357.14 protein_coding + - chr6:136822564-136913934:+ chr6:136844363:- chr6:137143702-137235072:+ chr6:137165501:- chr6:136630006,chr6:136630008 chr6:136845812,chr6:136845811 NA NA chr6:136951144,chr6:136951146 chr6:137166950,chr6:137166949 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none ASK_kinase_PH_domain(100%),MAP3K_TRAFs-binding_domain(100%)| ASK_PH(100%),MAP3K_TRAF_bd(100%)| 0 0 4 83 8 ENST00000698928.1 unknown upstream downstream duplicates(1),mismappers(1) CTAAATTTGAAGAAAGATGCTGCTTTCTTTATGTGCTTCACAATTCTGATGATTTCCAAATCTATTTCTGTACAGAACTTCATTGTAAAAA___GTTTTTTGAGATGGTGAACACCATTACCGAAGAGAAGGGGAGAAGCACAGAGGAAGGAGACTGTGAAAGTGACTTGCTGGAG|GGTCTTGCGCAGTCGCCCAGGCTGGAGTGCAGTGGGCACAATCTCAGCTCACTGCAGCGATGACCTCCTGGGCTCAAGCGGTCCTCCCACACCTCAGCCTCCTAAGTAGCTGGAGTCACGCTTGCGTGCCACCACACCCAGC KFEERCCFLYVLHNSDDFQIYFCTELHCKKFFEMVNTITEEKGRSTEEGDCESDLLE|glaqsprlecsghnlsslqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7797 CDH2::SMU1 ENSG00000170558.10::ENSG00000122692.9 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1359 TRUE 528 CDH2 ENSG00000170558.10 protein_coding - - chr18:27932879-28177946:- chr18:27982944:- chr18:25512843-25757910:- chr18:25562908:- SMU1 ENSG00000122692.9 protein_coding - - chr9:33041765-33076674:- chr9:33053290:- chr9:33041763-33076672:- chr9:33053288:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Cadherin__Y-type_LIR-motif(21%),Cadherin_domain(100%),Cadherin_prodomain_like(100%)|WD_domain__G-beta_repeat(23%) Cadherin(100%),Cadherin_C(0%),Cadherin_pro(100%)|WD40(11%) 1 0 2 48 685 ENST00000676445.1 ENST00000397149.4 upstream downstream duplicates(1),mismatches(1) CAGATGTGGACAGGATTGTGGGTGCGGGGCTTGGCACCGGTGCCATCATTGCCATCCTGCTCTGCATCATCATCCTGCTTA___TCCTTGTGCTGATGTTTGTGGTATGGATGAAACGCCGGGATAAAGAACGCCAGGCCAAACAACTTTTAATTGATCCtGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAAGAAGACCAG|ATCTGGAATATGAAGACCACAGAATGTTCAAATACCTTTAAATCCC...GGGGCAG___ATTGTCAGAAGCTTCAGTTCTGGTAAAAGAGAAGGTGGGGACTTTGTTTGCTGTGCCCTCTCTCCCCGTGGTGAATGGATCTACTGTGTAGGGG DVDRIVGAGLGTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQLLIDPEDDVRDNILKYDEEGGGEEDQ|IWNMKTTECSNTFKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7798 CDH2::SMU1 ENSG00000170558.10::ENSG00000122692.9 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1359 TRUE 528 CDH2 ENSG00000170558.10 protein_coding - - chr18:27932879-28177946:- chr18:27982944:- chr18:25512843-25757910:- chr18:25562908:- SMU1 ENSG00000122692.9 protein_coding - - chr9:33041765-33076674:- chr9:33048258:- chr9:33041763-33076672:- chr9:33048256:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Cadherin__Y-type_LIR-motif(21%),Cadherin_domain(100%),Cadherin_prodomain_like(100%)|WD_domain__G-beta_repeat(21%) Cadherin(100%),Cadherin_C(0%),Cadherin_pro(100%)|WD40(11%) 1 0 1 48 1167 ENST00000676445.1 ENST00000397149.4 upstream downstream none CAGATGTGGACAGGATTGTGGGTGCGGGGCTTGGCACCGGTGCCATCATTGCCATCCTGCTCTGCATCATCATCCTGCTTA___TCCTTGTGCTGATGTTTGTGGTATGGATGAAACGCCG...ATCCAGAAGATGATGTAAGAGATAATATTTTAAAATATGATGAAGAAGGTGGAGGAGAAGAAGACCAG|ATTGTCAGAAGCTTCAGTTCTGGTAAAAGAGAA...TGTTTCAGTACAGTCACTGGCAAACTGGAGAGAACTTTGACA___GTGCACGAGAAGGATGTGATTGGTATTGCACATCACCCTCATCAGAACCTGATTGCTAC PEDDVRDNILKYDEEGGGEEDQ|IVRSFSSGKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7808 PRKG1-AS1::PRKG1 ENSG00000236671.9::ENSG00000185532.20 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PRKG1-AS1 ENSG00000236671.9 lncRNA - - chr10:52230398-52314507:- chr10:52309470:- chr10:53990158-54074267:- chr10:54069230:- PRKG1 ENSG00000185532.20 protein_coding + - chr10:50990888-52298423:+ chr10:52197693:- chr10:52750648-54058183:+ chr10:53957453:- NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/read-through/5'-5' low none none none 0 0 3 70 17 ENST00000452247.7 unknown upstream downstream duplicates(1) CGGGACCAAAGCGGACAGGGTCCAACGTGCCAG___CACTGCCAAGAGAAGGCCTTTTGTACTCAGGTTAAATAAGAACATCCTGCAAGGAGTCTGTTCTTTTA...|...CTCTCACCTCTGAAGTTGT___GTTGAAAAGAAGATCAAGAAGTTTAGACAGAGACTTGGATCATCAACCAATTCTAATTCTGCTACTTAGAGAAAAATCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7813 CAMKMT::THADA ENSG00000143919.16::ENSG00000115970.19 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMKMT ENSG00000143919.16 protein_coding + + chr2:44361947-44772592:+ chr2:44390305:+ chr2:44589086-44999731:+ chr2:44617444:+ THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43498955:- chr2:43457990-43823177:- chr2:43726094:- chr2:44509945 chr2:43500794 NA NA chr2:44737084 chr2:43727933 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Lysine_methyltransferase(0%)|THADA/TRM732__DUF2428(13%) Methyltransf_16(0%)|DUF2428(0%) 1 0 1 120 205 ENST00000378494.8 ENST00000405975.7 downstream downstream none GTGGAAGGCTCCAGTGAGATGGAGTCGCGAGTCGCGGACGCTGGGACCGGCGAGACCGCGCGAGCAGCGGGCGGGAGTCCGGCAGTTGGCTGCACCACTCG...CATGGGTCCAATATACAAGCATCTTCTGTCCTGAATACAGTATCTCCTTAAG___GCATAATAGTGGATCCTTGAATGTTGAAGATGTCCTTACCAGCTTTGACAATACAGGAAATGTTT|GTTCATGCTTTAAATATCCTTAGAGCATTGTTCAGAGATACGCGCCTGGGAG WVQYTSIFCPEYSISLRHNSGSLNVEDVLTSFDNTGNV|cscfkyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7836 NOTCH2::PKHD1 ENSG00000134250.21::ENSG00000170927.15 JHUEM1 SRR8615554 SRR8652067 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOTCH2 ENSG00000134250.21 protein_coding - - chr1:119911553-120100779:- chr1:119923649:- chr1:120454176-120643366:- chr1:120466272:- PKHD1 ENSG00000170927.15 protein_coding - + chr6:51615299-52087613:- chr6:51964124:+ chr6:51480097-51952411:- chr6:51828922:+ chr1:119923649 chr6:51945616 NA NA chr1:120466272 chr6:51810414 NA NA sense antisense out-of-frame CDS intron translocation/5'-5' high none Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(50%)| EGF(100%),EGF_CA(100%),NOD(100%),Notch(100%),hEGF(100%)| 287 300 300 2030 1646 ENST00000256646.7 unknown upstream upstream duplicates(221),mismappers(1),mismatches(31) CAAAGACAACCACTGTGACCAGGGGTGCAACAGTGAGGAGTGTGGTTGGGATGGGCTGGACTGTGCTGCTGACCAACCTGAGAACCTGGCAGAAGGTACCCTGGTTATTGTGGTATTGATGCCACCTGAACAACTGCTCCAGGATGCTCGCAGCTTCTTGCGGGCACTGGGTACCCTGCTCCACACCAACCTGCGCATTAAGCGGGACTCCCAGGGGGAACTCATGGTGTACCCCTATTATGGTGAGAAGTCAGCTGCTATGAAGAAACAGAGGATGACACGCAGATCCCTTCCTGGTGAACAAGAACA|CATGTCAGCACTTCTCTGAACTTCAGGGAATGTGCAGTGTCTGCAAATCTTACATGTCACCTTAAATGTACTTGCAACACCACCAGAGTTATCTTGAAAGAAGTCATTGATCAGCAAGTTGGAACACCCGGCAAAGCAAAGACCTATTTGTGAGTGTATGCATTGAGCTGGGGTGGCAGAGGAGGTGGCGTATGGGAATCTCT KDNHCDQGCNSEECGWDGLDCAADQPENLAEGTLVIVVLMPPEQLLQDARSFLRALGTLLHTNLRIKRDSQGELMVYPYYGEKSAAMKKQRMTRRSLPGEQEh|msall* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Notch homolog 2 1 Yes marginal zone lymphoma, DLBCL, bladder leukaemia_lymphoma, epithelial oncogene, TSG nonsense, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 7839 CLIP1::KNTC1 ENSG00000130779.22::ENSG00000184445.12 JHUEM1 SRR8615554 SRR8652067 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122422521:- chr12:122755979-122907216:- chr12:122907068:- KNTC1 ENSG00000184445.12 protein_coding + - chr12:122527246-122626396:+ chr12:122545938:- chr12:123011793-123110943:+ chr12:123030485:- chr12:122392085 chr12:122560214 NA NA chr12:122876632 chr12:123044761 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 9 10 561 26 ENST00000620786.5 unknown upstream downstream duplicates(1),mismatches(3) GCGGCGGCGGCGCGTCACGCTCTCCCCCGCCCCGAGCCGACGAGCCGGGAGGCGGGAGGCGGCGGCCGCGGCGGCTGCTGCTGCTGCAGTGGGACAGGTGGCGGCGACCGGCGGCGTCCGAGGAG|GGTCTCACTCCATTGCCCAGGCTGGAGGGCAGTGATCACAGCTCACTGCAGCCTCAATCTCCTGGGCTCAAGCGATCCTCCCACCTCAGCCTCCCCAGTAGCTGGGACTACAG___AGACAGGATCTCACTGTGTTGCCAGGCCGCAGTGAAGTGGGGTGATCACAGGTGTGATCAGAGCTACTGCAGCCTGATACTCCTGGGCTCACaCAATTCTTCTGCCTCAGCTTCCCAAGTAGCTGGGACCATAGGAGCATGCCATGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7840 ENSG00000258081::NOVA1 ENSG00000258081.4::ENSG00000139910.20 JHUEM1 SRR8615554 SRR8652067 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258081 ENSG00000258081.4 lncRNA + + chr14:26599755-27295516:+ chr14:26843656:+ chr14:27068961-27764722:+ chr14:27312862:+ NOVA1 ENSG00000139910.20 protein_coding - + chr14:26443090-26598033:- chr14:26520419:+ chr14:26912296-27067239:- chr14:26989625:+ chr14:27008057,chr14:27008053 chr14:26517195,chr14:26517189 NA NA chr14:27477263,chr14:27477259 chr14:26986401,chr14:26986395 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 8 0 11 133 84 ENST00000552303.1 unknown downstream upstream duplicates(11),low_entropy(1),mismappers(36),mismatches(2),multimappers(1) AGTAGCTGGGACTGCAGGCGCCCGACACGACGCCCAGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGGTTTCACCGTGTTAGCCAGGATGGTCTGGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCTCATAAG|GGCACATCATTTCCTTCTGGCACTTAGAAACACCAATTTAGACAGCACTTCAGCACTGCACTTGGGGGCCATTTTAAGCAACGAAGTCAACAACAAAAAGCACAAAATTAAGCCGTGGCACTAATAAACTGAAAAGGACACTTGTCAAAACAAGATGGCAGGACATCGCATTGCCGGACCTAAGCTATGAAAATATGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7844 GRAMD1C::ENSG00000249743 ENSG00000178075.20::ENSG00000249743.8 JHUEM1 SRR8615554 SRR8652067 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1365 TRUE 529 GRAMD1C ENSG00000178075.20 protein_coding + + chr3:113828182-113947174:+ chr3:113882832:+ chr3:113547029-113666021:+ chr3:113601679:+ ENSG00000249743 ENSG00000249743.8 lncRNA + + chr5:73213930-73295258:+ chr5:73286487:+ chr5:72509757-72591085:+ chr5:72582314:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none GRAM_domain(100%)| GRAM(100%)| 1 0 5 335 27 ENST00000358160.9 ENST00000654696.1 downstream upstream none GGGGATTCAAGCCTTGCCACCGACTTACAGGAAGATGTAGAGGAAAATCCTAGTCCAACTGTGGAAGAGAATAATGTGGTAGTTAAAAAACAGGGGCCAAA...TATAACCTTCATGACCAAGGAAAAAACTGCTCGACTCATCCCAAACGCTATCCAGATAGTTACAGAAAGTGAAAAG___TTTTTCTTCACATCTTTTGGTGCCAGGGATAGAAGTTACCTCAGTATCTTTAGGTTGTGGCAGAATGTATTATTAGATAAG|CAGAGCTTCTGGTTCCTGGGCCTTCAGACTTGGACTAGAACTTCACTACCAGCTTTCCTGGGTCTCCAGCTTGCAGAGAGCAGATCGCAGAACTTCTTAGCCTCCATAATCAC___AAGAACGTGTTTGCTTCCCCTTCCACCATGATTGTAAGTTTCCTGAGGCCTCCCCAGTCCTGCAGAACT___GCTTTGAAG ITFMTKEKTARLIPNAIQIVTESEKFFFTSFGARDRSYLSIFRLWQNVLLDK|qsfwflglqtwtrtslpaflglqlaesrsqnflasiitrtcllplpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7845 GRAMD1C::ENSG00000249743 ENSG00000178075.20::ENSG00000249743.8 JHUEM1 SRR8615554 SRR8652067 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1365 TRUE 529 GRAMD1C ENSG00000178075.20 protein_coding + + chr3:113828182-113947174:+ chr3:113883517:+ chr3:113547029-113666021:+ chr3:113602364:+ ENSG00000249743 ENSG00000249743.8 lncRNA + + chr5:73213930-73295258:+ chr5:73273674:+ chr5:72509757-72591085:+ chr5:72569501:+ NA NA NA NA NA NA NA NA sense sense unknown intron intron translocation medium none GRAM_domain(100%)| GRAM(100%)| 15 0 16 103 192 unknown unknown downstream upstream duplicates(4),mismappers(1),mismatches(1),multimappers(1) GTGATAAGTATCCATGAAATCTTCACAATTTATGTTCAGAGATTGCAGTAAAGACAGGTGTAAGAAATTATAAAAGTATTAATTTGGGGAACTAATAAATGTCCATGAAATCTTCACAATTTATGTTCTTCTGCCATGGCTTCAGCCGGTCCCTCTGTTCGGGGTTCCTGACTTCCTGCAACACAATGGGAATGCCATTTTACACCCATTC...___CTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGATGTCGAGGCTGCGGTGAGCCATTATCGTGCCACGGCACTCCAGCCTGGGTGACAGAGTGAGATC|CAGCTGAGAGGTCACTCTCGAAAGTCCAAAGTTTGCATTCTCTTCTCCCACTGTACCCACTCTCCCATAAACACTTTGAGGCAGCCAGTCTGATCTCCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7927 AARS2::PKP3 ENSG00000124608.5::ENSG00000184363.10 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE TRUE TRUE 780 FALSE NA FALSE NA AARS2 ENSG00000124608.5 protein_coding - - chr6:44298731-44313347:- chr6:44310299:- chr6:44266468-44281084:- chr6:44278036:- PKP3 ENSG00000184363.10 protein_coding + + chr11:392614-404908:+ chr11:403078:+ chr11:392614-404908:+ chr11:403078:+ chr6:44309218 chr11:401202 NA NA chr6:44276955 chr11:401202 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none tRNA_synthetases_class_II_(A)(39%)| tRNA-synt_2c(32%)| 85 82 107 235 212 ENST00000244571.5 ENST00000331563.7 upstream upstream duplicates(14),inconsistently_clipped(3),low_entropy(13),mismatches(11) AGATCCACTACGACCTTGCTGGTGGGGTGGGAGCCCCCCAGCTGGTAGAGCTTTGGAACCTGGTCTTCATGCAACACAACAG___AGAGGCAGATGGAAGCCTGCAGCCCCTGCCCCAGCGGCATGTGGACACAGGAATGGGCCTGGAAAGGCTGGTGGCTGTGCTGCAAGGCAAACACTCCACCTATGACACTGACCTCTTTTCCCCGCTGCTCAACGCCATACAGCAG|CTGCCCCTCGCCGCCGATGCGCTCACCTTCGCGGAGGTGTCCAAGGACCCCAAGGGCCTCGAGTGGCTGTGGAGCCCCCAGATCGTGGGGCTGTACAACCGGCTGCTGCAGCGCTGCGAGCTCAACCGGCACACGACGGAGGCGGCCGCCGGGGCGCTGCAGAACATCACGGCAGGCGACCGCAGG___TGGGCGGGGGTGCTGAGCCGCCTGGCCCTGGAGCAGGAGCGTATTCTGAACCCCCTGCTAGACCGTGTCAGGACCGCCGACCA IHYDLAGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQ|LPLAADALTFAEVSKDPKGLEWLWSPQIVGLYNRLLQRCELNRHTTEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTAD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7933 KDR::CRACD ENSG00000128052.10::ENSG00000109265.15 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDR ENSG00000128052.10 protein_coding - - chr4:55078481-55125595:- chr4:55097662:- chr4:55944648-55991762:- chr4:55963829:- CRACD ENSG00000109265.15 protein_coding + + chr4:56049098-56330609:+ chr4:56179284:+ chr4:56915264-57196775:+ chr4:57045450:+ chr4:55097046,chr4:55097051 chr4:56098266,chr4:56098261 NA NA chr4:55963213,chr4:55963218 chr4:56964432,chr4:56964427 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein_kinase_domain(11%),VEGFR-2_Transmembrane_domain(100%)|Domain_of_unknown_function_(DUF4592)(100%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(5%),Pkinase(9%),VEGFR-2_TMD(100%),ig(100%)|DUF4592(100%) 1 3 1 80 9 ENST00000263923.5 ENST00000646253.2 upstream upstream none GAGACCGGCTGAAGCTAG___GTAAGCCTCTTGGCCGTGGTGCCTTTGGCCAAGTGATTGAAGCAGATGCCTTTGGAATTGACAAGACAGCAACTTGCAGGACAGTAGCAGTCAAAATGTTGAAAG|CTTACAAGAGCAGTGATTCCCAGGCTTTCTCAGCAATGTACCCCATTTCCTGACATTTACAGCTGAAGGTGAAGTTTCCCTTTTGCAAGGAGAAAATTTTGGTGGAGAATTATCCAAC...AGGCTGACAAAGAACAAACAGCAAGACAGTTTCTGCTCCCACGGAGACCAAAAATTGACACCAAACAGAAAGCTAAAGTCAGCATGGAAAATGTCCTCC...ATGGCCATGGAGGAAAGTAAACTTACAAAGAATGTCCATAATGAGGCTGTGAGTGCTGATGTTTCAGGTATGGTACAAAGTGGTGACTCTGAGTTGCAAAT DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLK|aykssdsqafsamypis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Vascular endothelial growth factor receptor 2 TK VEGFR P35968 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vascular endothelial growth factor receptor 2 1 Yes NSCLC, angiosarcoma melanoma epithelial oncogene missense FALSE NA NA NA NA NA NA NA NA NA 7937 CHIC2::KIT ENSG00000109220.11::ENSG00000157404.17 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE TRUE TRUE 781 FALSE NA FALSE NA CHIC2 ENSG00000109220.11 protein_coding - - chr4:54009789-54064605:- chr4:54013837:- chr4:54875956-54930772:- chr4:54880004:- KIT ENSG00000157404.17 protein_coding + + chr4:54657267-54740783:+ chr4:54695512:+ chr4:55523434-55606949:+ chr4:55561678:+ chr4:54012833,chr4:54012835 chr4:54661009,chr4:54661007 NA NA chr4:54879000,chr4:54879002 chr4:55527175,chr4:55527173 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Golgin_subfamily_A_member_7/ERF4_family(100%)|Immunoglobulin_domain(100%),Protein_kinase_domain(100%) Erf4(100%)|I-set(100%),Ig_3(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(100%) 4 5 7 1808 107 ENST00000263921.8 ENST00000687295.1 upstream upstream none TTTAAAGCCAGCATCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTTGTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCAGTAAAAGA___ACACGAAGATCGATTGAGAAGTTATTAGAATGGGAAAACAATAGGTTATACCACAAG___CTGTGCTTGCATTGGAGACTGAGCAAAAGGAAATGTGAAACGAATAACATGATGGAATAT|GCTCTTCTCAACCATCTGTGAGTCCAGGGGAACCGTCTCCACCATCCATCCATCCAGGAAAATCAGACTTAATAGTCCGCGTGGGCGACGAGATTAGGCTGTTATGCACTGATCCGGGCTTTGTCAAATGGACTTTTGAGATCCTGGATGAAACGAATGAGAATAAGCAGAATGAATGGATCACGGAAAAGGCAGAAGCCACCAACACCGGCAAATACACGTGCACCAACAAACACGGCTTAAGCAATTCC FKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMMEY|allnhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mast/stem cell growth factor receptor Kit TK PDGFR P10721 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteine-rich hydrophobic domain 2 2 AML leukaemia_lymphoma fusion translocation TRUE v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 1 Yes GIST, AML, TGCT, mastocytosis, mucosal melanoma GIST, epithelioma familial gastrointestinal stromal tumour leukaemia_lymphoma, mesenchymal, other, epithelial oncogene missense, other 7948 NEGR1::C1orf87 ENSG00000172260.15::ENSG00000162598.13 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:72282319:- chr1:71861626-72748222:- chr1:72748002:- C1orf87 ENSG00000162598.13 protein_coding - + chr1:59987269-60073770:- chr1:60063706:+ chr1:60452941-60539442:- chr1:60529378:+ chr1:72193487 chr1:60019083 NA NA chr1:72659170 chr1:60484755 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Immunoglobulin_I-set_domain(15%)| I-set(0%)| 2 0 0 36 1 ENST00000357731.10 unknown upstream upstream none GCAGGGATGGACATGATGCTGTTGGTGCAGGGTGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGTGCTCCTCAGCCTGTGCTGCCTGCTACCCTCCTGCCTCCCGGCT...GGACTTCCCCTGGGCGGCCGTGGACAACATGATGGTCAGAAAAGGGGACACGGCGGTGCTTAG|GTCTGTGGAGTCACTAGGATGGAGGCGAGTACCTGTGGTATCACTTGGTGCAAGCTGGACCTCAGTGGCAGAAAAGCA DFPWAAVDNMMVRKGDTAVLr|sveslgwrrvpvvslgaswtsvaek NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7949 XPNPEP3::SELENOM ENSG00000196236.13::ENSG00000198832.11 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XPNPEP3 ENSG00000196236.13 protein_coding + + chr22:40857077-40932815:+ chr22:40886515:+ chr22:41253081-41328819:+ chr22:41282519:+ SELENOM ENSG00000198832.11 protein_coding - + chr22:31104772-31120069:- chr22:31111929:+ chr22:31500758-31516055:- chr22:31507915:+ chr22:40888925,chr22:40888925 chr22:31107031,chr22:31107028 NA NA chr22:41284929,chr22:41284929 chr22:31503017,chr22:31503014 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Aminopeptidase_P__N-terminal_domain(100%),Metallopeptidase_family_M24(5%)| AMP_N(100%),DnaJ(100%),Peptidase_M24(0%)| 1 0 1 35 7 ENST00000357137.9 unknown downstream upstream none GCCAAAGCCAAGAGCAAGAACAAGGTTCGGGGTGTTCAGCAGCTGATACAGCGCCTCCGGCTGATCAAGTCTCCTGCAGAAATTGAACGAATGCAGATTGCTGGGAAGCTGACATCACAG|GTTAGGAAACAGGCTCAGAAAGGTGAAAT...GATGGTGTGTCCAGAGTTTGTTCCTTCAAATGTGTCTGGAGTTTCTTCCTTCCAGTGGGTTAGTGGTCTCACTGACTTCAAGAATGAAGCCACGGACTTTC AKAKSKNKVRGVQQLIQRLRLIKSPAEIERMQIAGKLTSQ|vrkqaqkge NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7970 CRACD::LINC02380 ENSG00000109265.15::ENSG00000248505.2 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary arriba TRUE FALSE FALSE NA TRUE 1384 FALSE NA CRACD ENSG00000109265.15 protein_coding + + chr4:56049098-56330609:+ chr4:56179430:+ chr4:56915264-57196775:+ chr4:57045596:+ LINC02380 ENSG00000248505.2 lncRNA + + chr4:57424495-57478341:+ chr4:57464225:+ chr4:58290661-58344507:+ chr4:58330391:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 7 6 ENST00000682029.1 ENST00000658472.1 downstream upstream none TATCCAACAAGAAAAAGACCTGTGGCTATTAAGATAG|CTGGACTGAGTGCCCATGACCTCAGGGACATCTTGGAAGCTATATGTAGAAGATGGAAAAGCCTCTGTCATCTCCATCAATTTAATCTCCAAATAACTACTTAGAAAAGGGACAGCTTACTAACTCCTTCATTGCCCAGTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7976 TMCO3::RBM14 ENSG00000150403.18::ENSG00000239306.5 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 782 FALSE NA FALSE NA TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113520733:+ chr13:114145336-114208905:+ chr13:114175048:+ RBM14 ENSG00000239306.5 protein_coding + + chr11:66616626-66629934:+ chr11:66626461:+ chr11:66384097-66397405:+ chr11:66393932:+ chr13:113530051 chr11:66624762 NA NA chr13:114184366 chr11:66392233 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sodium/hydrogen_exchanger_family(46%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(0%) Na_H_Exchanger(39%)|RRM_1(67%),RRM_5(0%) 10 13 30 264 209 ENST00000434316.7 ENST00000310137.5 downstream upstream duplicates(2),inconsistently_clipped(1),mismatches(1) GAGCGTCTTCATTTCCACGTGTCTGTCCTTGTCAAGCACACCCCTCGTGTCCAGGTTCCTCATGGGCAGTGCTCGGGGTGACAAAGAAG___GCGACATTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATGGCCGTCATGCCGACTCTCATACAGGCGGGCGCCAGTGCATCTTCTAG|GTATGGTTCCGACCGGCGTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGCGGGCGGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAGGGCCATCCTGGGATGGG SVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGMLVTQDVQLGLFMAVMPTLIQAGASASSr|YGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQMHSGYQRRM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7977 TADA2A::DMD ENSG00000276234.5::ENSG00000198947.18 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1386 TRUE 530 TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37444768:+ chr17:35766977-35839830:+ chr17:35804870:+ DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:31341773:- chrX:31115794-33357726:- chrX:31359890:- chr17:37446416 chrX:31342004 NA NA chr17:35806518 chrX:31360121 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Myb-like_DNA-binding_domain(100%)|EF-hand(100%),EF_hand(100%),WW_domain(100%),Zinc_finger__ZZ_type(100%) Myb_DNA-bind_6(100%),Myb_DNA-binding(100%)|EF-hand_2(100%),EF-hand_3(100%),WW(100%),ZZ(100%) 6 3 14 152 22 ENST00000615182.5 unknown downstream downstream none ACCCTCCCCGACCTACCTTTGACTCCTTGCTTTCTCGGGACATGGCCGGGTACATGCCAGCTCGAGCAGATTTCATTGAG___GAATTTGACAATTATGCAGAATGGGACTTGAGAGACATTGATTTTGTTGAAGATGACTCGGACATTTTACATG|ATAATGAAATAGGTGCAGAACGATCAAATGACATAACCAAGGTCACAAAGATAGTTATAATACTGGGACTGGAACCCAGTTTCTGGACATCCAAGCCACACATCACACTGCCTTACCCGTTAAGAAGAAATGCCCAGGCCAATAACTGTCTAGTCTATCTGCTATTGCCAACGA PPRPTFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILH|dneigaersnditkvtkiviilglepsfwtskphitlpyplrrnaqannclvylllpt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7978 TADA2A::DMD ENSG00000276234.5::ENSG00000198947.18 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 783 TRUE 1386 TRUE 530 TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37444768:+ chr17:35766977-35839830:+ chr17:35804870:+ DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:31323658:- chrX:31115794-33357726:- chrX:31341775:- chr17:37446416 chrX:31342004 NA NA chr17:35806518 chrX:31360121 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Myb-like_DNA-binding_domain(100%)|EF-hand(100%),EF_hand(100%),WW_domain(100%),Zinc_finger__ZZ_type(100%) Myb_DNA-bind_6(100%),Myb_DNA-binding(100%)|EF-hand_2(100%),EF-hand_3(100%),WW(100%),ZZ(100%) 9 3 8 152 21 ENST00000615182.5 ENST00000357033.9 downstream downstream low_entropy(1),mismatches(2) CTTTGACTCCTTGCTTTCTCGGGACATGGCCGGGTACATGCCAGCTCGAGCAGATTTCATTGAG___GAATTTGACAATTATGCAGAATGGGACTTGAGAGACATTGATTTTGTTGAAGATGACTCGGACATTTTACATG|CGTCTGTCCAGGGTCCCTGGGAGAGAGCCATCTCGCCAAACAAAGTGCCCTACTATATCAA___CCACGAGACTCAAACAACTTGCTGGGACCATCCCAAAATGACAGAGCTCTACCAGTCTTTAG___CTGACCTGAATAATGTCAGATTCTCAGCTTATAGGACTGCCATGAAACTCCGAAGACTGCAGAAGGCCCTTTGCT___TGGATCTCTT FDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILH|aSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7979 POLR1HASP::TRIM40 ENSG00000204623.11::ENSG00000204614.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 784 TRUE 1387 TRUE 531 POLR1HASP ENSG00000204623.11 transcribed_unitary_pseudogene - - chr6:29976042-30061640:- chr6:30021667:- chr6:29943819-30029417:- chr6:29989444:- TRIM40 ENSG00000204614.9 protein_coding + + chr6:30136124-30148735:+ chr6:30145994:+ chr6:30103901-30116512:+ chr6:30113771:+ chr6:30010406,chr6:30010411 chr6:30139588,chr6:30139583 NA NA chr6:29978183,chr6:29978188 chr6:30107365,chr6:30107360 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none none 1 7 9 36 131 ENST00000448093.5 ENST00000396581.6 upstream upstream none GGTACATCATCTAAAGATCCTAGGATTGCTGCAGGTCAGCAGTCTCCACTGGAAAAAAAGATCTTG___GCTTTGATTTGTTGGAGAAACTGTTACCAGAAAAACAGGTCCCGATCCCGACCCCAAAAGAGTATTCTTGGATCTTGCACAGGAAGGAATTAAAG|GAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAG___TTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCCAGCACCAAACCAGGGAACAGCTGGGTGCCCTCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCGGCCAGAATCCTTGACATCTCCAGGGCAGTAACACAG...___AATGCTGGTGACTTACTGAACAGGTACGAGCTGTCCCTTCTTCTTTCCCACATGTGCATATAAACCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7980 POLR1HASP::TRIM40 ENSG00000204623.11::ENSG00000204614.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 785 TRUE 1387 TRUE 531 POLR1HASP ENSG00000204623.11 transcribed_unitary_pseudogene - - chr6:29976042-30061640:- chr6:30058115:- chr6:29943819-30029417:- chr6:30025892:- TRIM40 ENSG00000204614.9 protein_coding + + chr6:30136124-30148735:+ chr6:30145994:+ chr6:30103901-30116512:+ chr6:30113771:+ chr6:30010406,chr6:30010411 chr6:30139588,chr6:30139583 NA NA chr6:29978183,chr6:29978188 chr6:30107365,chr6:30107360 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none none 0 4 3 62 131 ENST00000688495.1 ENST00000396581.6 upstream upstream none GCGCTTGGAAAGGG___ATTGGCCTGGGGTACATCATCTAAAGATCCTAGGATTGCTGCAGGTCAGCAGTCTCCACTGGAAAAAAAGATCTTG|GAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAG___TTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCCAGCACCAAACCAGGGAACAGCTGGGTGCCCTCCCTCAGCAGTGGCTGGGCCAGCTGGAGCACATGCCAGCAGAAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7981 POLR1HASP::TRIM40 ENSG00000204623.11::ENSG00000204614.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1387 TRUE 531 POLR1HASP ENSG00000204623.11 transcribed_unitary_pseudogene - - chr6:29976042-30061640:- chr6:30034908:- chr6:29943819-30029417:- chr6:30002685:- TRIM40 ENSG00000204614.9 protein_coding + + chr6:30136124-30148735:+ chr6:30145994:+ chr6:30103901-30116512:+ chr6:30113771:+ chr6:30010406,chr6:30010411 chr6:30139588,chr6:30139583 NA NA chr6:29978183,chr6:29978188 chr6:30107365,chr6:30107360 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none none 0 1 4 26 131 ENST00000420251.5 ENST00000396581.6 upstream upstream none CCAGGATGAGGTGAAGACGATCTTGGAAATCAGCCCAGATGTGCATGCACCAGTCCACGTGTGGCAGGACCAAGGGAAGTGTCTTCACAAAGATGAG|GAACGACTCAATCGCCGGAGCAGGAAGCTCAGAAAGGACATTGCAGAACTTCAGCGGCTCAAGGCTCAGCAGGAGAAGAAACTGCAGGCTCTGCAG___TTTCAGGTAGACCACGGGAACCACAGGCTGGAGGCTGGGCCGGAGAGCCAGCACCAAACCAGGGAACAGCTG...TTAGACACCAACACACTGAAG___AATGCTGGTGACTTACTGAACAG___GAGTGCTCCACAGAAATTAGAGGTTATTTATCCCCAGTTGGAGAAAGGAGTCAGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7982 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1388 TRUE 532 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21866842:+ chr9:21802635-21937650:+ chr9:21866841:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22032674:+ chr9:21994138-22128102:+ chr9:22032673:+ chr9:21889530,chr9:21889531 chr9:22032059,chr9:22032057 NA NA chr9:21889529,chr9:21889530 chr9:22032058,chr9:22032056 NA NA sense sense unknown 3'UTR exon/splice-site deletion/read-through high none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 6 6 4 29 18 ENST00000644715.2 ENST00000428597.6 downstream upstream mismatches(1) TACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCC...CTGGAATGGCACTGAATTTTTAGGTCGATTTGGGAAGAATTGACAATATTGAACCTTTCAATCGATGGACATG|GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAAAAACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7983 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1388 TRUE 532 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21889530,chr9:21889531 chr9:22032059,chr9:22032057 NA NA chr9:21889529,chr9:21889530 chr9:22032058,chr9:22032056 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 4 3 2 158 34 ENST00000644715.2 ENST00000650946.1 downstream upstream mismatches(2) TAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGgTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGGGGAG...GGTGAGAAATTGGAGGGGAACTGTGAAAATTGCCACATAGATTAGAGGCAGGAAAATAAAGGACaGCTAAGTTTATATAGTGAACAGTGAGCCGCATGGAC KEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7984 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1388 TRUE 532 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21889530,chr9:21889531 chr9:22032059,chr9:22032057 NA NA chr9:21889529,chr9:21889530 chr9:22032058,chr9:22032056 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 2 1 234 34 ENST00000644715.2 ENST00000650946.1 downstream upstream mismatches(1) GACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGC...GTTATCAACATGACCACAGTTCCAGAGGgGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAA...GAATGTATCTAACTCCAAAGAAACCATCAGAGGTAACAG___TgGAGACGGGGTTTCACCATGTTGGCCAGACTGGTCTTGAACTCcCGACCTCGTGATTCGCC VINMTTVPEgVLAKEAGICYASIAMATDYDCWKEHEEA|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7985 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1388 TRUE 532 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22032674:+ chr9:21994138-22128102:+ chr9:22032673:+ chr9:21889530,chr9:21889531 chr9:22032059,chr9:22032057 NA NA chr9:21889529,chr9:21889530 chr9:22032058,chr9:22032056 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 2 0 1 234 18 ENST00000644715.2 ENST00000428597.6 downstream upstream low_entropy(1),mismatches(1) CCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAGG...GACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGC...CGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAAGATGATTTTTCCTGCAGGGATTCCCTCTACAAAATTAA ASIAMATDYDCWKEHEEA|aiystdlssiplavldvkmifpagipstkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7987 ITSN1::C21orf62-AS1 ENSG00000205726.15::ENSG00000205930.11 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 786 TRUE 1389 TRUE 533 ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33642713:+ chr21:35014706-35272165:+ chr21:35015019:+ C21orf62-AS1 ENSG00000205930.11 lncRNA + + chr21:32772100-33019751:+ chr21:32884104:+ chr21:34144411-34392059:+ chr21:34256412:+ chr21:33699882 chr21:32827346 NA NA chr21:35072187 chr21:34199656 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 2 6 6 213 10 ENST00000381318.8 ENST00000666106.1 downstream upstream mismatches(7) AGAAGAGTGGAGGCGCCAGGGGAGGGAGCGTAGCTTGGTTGCTCCGTAGTACGGCGGCTCGCGAGGAAGAATCCCGAGCGGGCTCCGGGACGGACAGAGAGGCGGGCGGGGATGGTGTGCGGGGCTGCGGCTCCTGCGTCCCTCCCAGCGGCGCGTGAGCGGCACTGATTTGTCCCTGGGGCGGCAGCGCGGACCCGCCCGGAGATGAG|CTCATAAACGAGCTCTCGAGGCAGTTTTGTgAGGCTCCAAAAAAGGCTTTCACGAGGTCAATGCCGGTGGCATAAGTACCTGCTGGGCTTCCCAGGACAGCAGCTGACAGCACAGGCTTGGCAG___ACACCCCTGAGAGAGTCTTCGGCACATATGATGTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7988 ITSN1::C21orf62-AS1 ENSG00000205726.15::ENSG00000205930.11 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 787 TRUE 1389 TRUE 533 ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33642713:+ chr21:35014706-35272165:+ chr21:35015019:+ C21orf62-AS1 ENSG00000205930.11 lncRNA + + chr21:32772100-33019751:+ chr21:32885932:+ chr21:34144411-34392059:+ chr21:34258240:+ chr21:33699882 chr21:32827346 NA NA chr21:35072187 chr21:34199656 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 8 4 213 29 ENST00000381318.8 ENST00000650763.1 downstream upstream mismatches(3) GCTTGGTTGCTCCGTAGTACGGCGGCTCGCGAGGAAGAATCCCGAGCGGGCTCCGGGACGGACAGAGAGGCGGGCGGGGATGGTGTGCGGGGCTGCGGCTCCTGCGTCCCTCCCAGCGGCGCGTGAGCGGCACTGATTTGTCCCTGGGGCGGCAGCGCGGACCCGCCCGGAGATGAG|ACACCCCTGAGAGAGTCTTCGGCACATATGATGTCCTCTATTGATGTTTGCTGAATAGATGAGGATGCCAAAAGAGGGAGGAGATACCAAAAGAGGGAAAGAAGGACACCCAGAAGACAAATGGTGCTCACCTTGAG___CCTCGAGGTCTTTAGGAAAACGGTGACTCTGGAGCACAGCCCTGGATCCCTGATGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7989 ITSN1::C21orf62-AS1 ENSG00000205726.15::ENSG00000205930.11 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1389 TRUE 533 ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33642713:+ chr21:35014706-35272165:+ chr21:35015019:+ C21orf62-AS1 ENSG00000205930.11 lncRNA + + chr21:32772100-33019751:+ chr21:32893578:+ chr21:34144411-34392059:+ chr21:34265886:+ chr21:33699882 chr21:32827346 NA NA chr21:35072187 chr21:34199656 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 0 213 45 ENST00000381318.8 ENST00000700822.1 downstream upstream mismatches(3) GTAGCTTGGTTGCTCCGTAGTACGGCGGCTCGCGAGGAAGAATCCCGAGCGGGCTCCGGGACGGACAGAGAGGCGGGCGGGGg?GGgGgG?GGGG?TGCGGCTCCTGCGTCCCTCCCAGCGGCGCGTGAGCGGCACTGATTTGTCCCTGGGGCGGCAGCGCGGACCCGCCCGGAGATGAG|CCTCGAGGTCTTTAGGAAAAC...ACTCTGGAGCACAGCCCTGGATCCCTGATGGCAGGTGGATGAATCTGCTCCCCACCTGGATGCTGCTAGTCCTTTCTCCAGGCTCCGTGACTGAAAATGTGCTTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7990 TMEM241::NPC1 ENSG00000134490.14::ENSG00000141458.13 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 788 TRUE 1390 TRUE 534 TMEM241 ENSG00000134490.14 protein_coding - - chr18:23197144-23437961:- chr18:23399566:- chr18:20777108-21017925:- chr18:20979530:- NPC1 ENSG00000141458.13 protein_coding - - chr18:23506184-23586506:- chr18:23545149:- chr18:21086148-21166470:- chr18:21125113:- chr18:23396698,chr18:23396703 chr18:23547045,chr18:23547044 NA NA chr18:20976662,chr18:20976667 chr18:21127009,chr18:21127008 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Patched_family(100%),Sterol-sensing_domain_of_SREBP_cleavage-activation(100%) |MMPL(100%),Mic1(100%),Patched(50%),Sterol-sensing(100%) 2 2 4 33 39 ENST00000477053.5 ENST00000269228.10 upstream downstream duplicates(2),mismatches(2) AAGGGGACGAGTTGACAGATGTGCGTGAGGAGGTCTCTGGTCGGCCTCACCTTTTGTACCTGCTACCTGGCTTCTTACCTCACGAACAAG___TATGTGCTG...GCTGGGTAGAGATCAACAGCAGTTCAAG___ATCTCATGTTCTTGTGTGGCTTCCTGCTTCAGTGCTGTTTGTGGGTATAATCTATGCTGGGTCCAGAGCATTGTCCAGACTG|GTTTATTAATTTTGTGAAAAACTACAAGAATCCCAATCTGACCATTTCCTTCACTGCTGAACGAAGTATTGAAGATGAACTAAATCGTGAAAGTGACAGTGATGTCTTCACCGTTGTAATTAGCTATGCCATCATGTTTCTATATATTTCCC wveinsssrSHVLVWLPASVLFVGIIYAGSRALSRL|vy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7991 TMEM241::NPC1 ENSG00000134490.14::ENSG00000141458.13 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1390 TRUE 534 TMEM241 ENSG00000134490.14 protein_coding - - chr18:23197144-23437961:- chr18:23421367:- chr18:20777108-21017925:- chr18:21001331:- NPC1 ENSG00000141458.13 protein_coding - - chr18:23506184-23586506:- chr18:23545149:- chr18:21086148-21166470:- chr18:21125113:- chr18:23396698,chr18:23396703 chr18:23547045,chr18:23547044 NA NA chr18:20976662,chr18:20976667 chr18:21127009,chr18:21127008 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Patched_family(100%),Sterol-sensing_domain_of_SREBP_cleavage-activation(100%) |MMPL(100%),Mic1(100%),Patched(50%),Sterol-sensing(100%) 1 1 0 39 39 ENST00000581444.5 ENST00000269228.10 upstream downstream mismatches(2) CGTGGATCCCCGgaAAGGGGACGAGTTGACAGATGTGCGTGAGGAGGTCTCTGGTCGGCaTaACCTTTTGTACCTGCTACCTGGCTTCTTACCTCACGAACAAG___TATGTGCTGTCTGTaTTGAAATTTACCTACCCTACATTATTCCAAGG___GTGGCAGACGCTCATTGGTGGACTTTTGCTTCATGTGTCCTGGAAACTGGGCTGGGTAGAGATCAACAGCAGTTCAAG|GTTTATTAATTTTGTGAAAAACTACAAGAATCCCAATCTGACCATTTCCTTCACTGCTGAACGAAGTATTGAAGATGAACTAAATCGTGAAAGTGACAGTGATGTCTTCACCGTTGTAATTAGCTATGCCATCATGTTTCTATATATTTCCC MCVRRSLVGiTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSr|FINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 7992 FHIT::ROBO1 ENSG00000189283.11::ENSG00000169855.21 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1391 TRUE 535 FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:61200617:- chr3:59733003-61237133:- chr3:61186291:- ROBO1 ENSG00000169855.21 protein_coding - - chr3:78597239-79767998:- chr3:79035727:- chr3:78646389-79817148:- chr3:79084877:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site intron duplication high none |Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),V-set(100%),fn3(100%),ig(100%) 1 0 3 10 0 ENST00000492590.6 unknown upstream downstream none GCTGTCAACATCCTGGAAG___CTTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAG|ATAAAGTCTCGTACTGTTGCCCAGTTTGGAATGCAGTTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7993 FHIT::ROBO1 ENSG00000189283.11::ENSG00000169855.21 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1391 TRUE 535 FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:61200617:- chr3:59733003-61237133:- chr3:61186291:- ROBO1 ENSG00000169855.21 protein_coding - - chr3:78597239-79767998:- chr3:78938927:- chr3:78646389-79817148:- chr3:78988077:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),V-set(100%),fn3(100%),ig(100%) 0 1 2 10 11 ENST00000492590.6 ENST00000464233.6 upstream downstream none AGCTTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAG|GCTCCCGTCTTCGTCAGGAAGATTTTCCACCTCGCATTGTTGAACACCCTTCAGACCTGATTGTCTCAAAAGGAGAACCTGCAACTTTGAACTGCAAAGCTGAAGGCCGCCCCACACCCACTATTGAATGGTACAAAGGGGGAGAGAGAGTGGAGACAGACAAAGATGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7994 FHIT::ROBO1 ENSG00000189283.11::ENSG00000169855.21 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1391 TRUE 535 FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:61200617:- chr3:59733003-61237133:- chr3:61186291:- ROBO1 ENSG00000169855.21 protein_coding - - chr3:78597239-79767998:- chr3:78746900:- chr3:78646389-79817148:- chr3:78796050:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(65%) |I-set(99%),Ig_2(96%),Ig_3(98%),V-set(100%),fn3(100%),ig(99%) 0 1 0 10 16 ENST00000492590.6 ENST00000464233.6 upstream downstream none CTGCCTTTCATTCCCAGCTGTCAACATCCTGGAAG___CgTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAG|TACTTCGGGATGACTTC...AAAACCCTTCGGATGTCATGGTTGCAGTAGGAGAGCCTGCAGTAATGGAATGCCAACCTCCACGAGGCCATCCTGAGCCCACCATTTCATGGAAGAAAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 7995 MBD5::ORC4 ENSG00000204406.14::ENSG00000115947.14 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBD5 ENSG00000204406.14 protein_coding + + chr2:148021011-148516971:+ chr2:148021684:+ chr2:148778580-149274540:+ chr2:148779253:+ ORC4 ENSG00000115947.14 protein_coding - + chr2:147930396-148021604:- chr2:147990041:+ chr2:148687965-148779173:- chr2:148747610:+ chr2:148033723,chr2:148033724 chr2:147988861,chr2:147988859 NA NA chr2:148791292,chr2:148791293 chr2:148746430,chr2:148746428 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 0 2 1 57 8 ENST00000642680.2 unknown downstream upstream none CTACACCCAGGAGCAGCCACTTCCCCAGCTCTCCTCCTCCTCCTTCGCCTCCTCCTCCTCCACTCCCCCCCTTTATTACCCTTTGTGTCATCCTCCACAGC...GGCACTCAAAAGTGGGGGGCAGGAAAG|ATGGTGGCAGAAGAAAACACCGAAAACAATACCACTACCCCACTCCCTTTATTAGAAAAAAGTTAAAATACAAATTCTATTACTGTTTACCTAGGACCTAACTTCACACGGCTGACATTTCTCAAAGATAG___AGATGGGGCTTCCCTCTGTCAACTAGGGCAGTGGCACGATAATAGCTCACTGAAGTCATGAACTCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8003 TMCO3::RBM14-RBM4 ENSG00000150403.18::ENSG00000248643.5 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1393 TRUE 536 TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113520733:+ chr13:114145336-114208905:+ chr13:114175048:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66639700:+ chr11:66384097-66413940:+ chr11:66407171:+ chr13:113530051 chr11:66624762 NA NA chr13:114184366 chr11:66392233 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation medium none Sodium/hydrogen_exchanger_family(46%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%),Zinc_knuckle(100%) Na_H_Exchanger(39%)|RRM_1(40%),RRM_5(22%),zf-CCHC(100%),zf-CCHC_3(100%) 2 2 4 264 1915 ENST00000462877.5 ENST00000421355.1 downstream upstream duplicates(1),mismatches(2) GTGCAGATCACCACTTTATAAAG___GACATTGTTACCATAGGAATGCTGTCCTTGCCTTGTGGCTGGCTATGTACAGCCATAGGATTGCCTACAATGTTTtGT...TGGGACCTTCAGGACTAAATAGTATTAAG___...CTCGGGGTGACAAAGAAG___GCGACATTGACTACAGCACCGTGCTCCTCGGCATGCTGGTGACGCAGGACGTGCAGCTCGGGCTCTTCATGGCCGTCATGCCGACTCTCATACAGGCGGGCGCCAGTGCATCTTCTAG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGCAAGAATAAGAGCAAAACCTCAACAAAGTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8004 TMCO3::RBM14-RBM4 ENSG00000150403.18::ENSG00000248643.5 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1393 TRUE 536 TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113503588:+ chr13:114145336-114208905:+ chr13:114157903:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66639700:+ chr11:66384097-66413940:+ chr11:66407171:+ chr13:113530051 chr11:66624762 NA NA chr13:114184366 chr11:66392233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Sodium/hydrogen_exchanger_family(18%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%),Zinc_knuckle(100%) Na_H_Exchanger(3%)|RRM_1(40%),RRM_5(22%),zf-CCHC(100%),zf-CCHC_3(100%) 1 0 1 235 1915 ENST00000434316.7 ENST00000421355.1 downstream upstream mismatches(1) CTGGGACCTTCAGGACTAAATAGTATTAAG___TCTATTGTGCAAGTGGAGACATTAGGAGAATTTGGGGTGTTTTTTACTCTTTTTCTTGTTGGCTTAGAATTTTCTCCAGAAAAGCTAAGAAAG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATACGCAACCTGC LGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRK|alvrmvklfignlpreateqeirslfeqygkvlecdiiknygfvhiedktaaedairnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8016 DHX36::ARHGEF26-AS1 ENSG00000174953.14::ENSG00000243069.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1397 TRUE 537 DHX36 ENSG00000174953.14 protein_coding - - chr3:154272546-154324487:- chr3:154309653:- chr3:153990335-154042276:- chr3:154027442:- ARHGEF26-AS1 ENSG00000243069.9 lncRNA - - chr3:154024401-154121347:- chr3:154030379:- chr3:153742190-153839136:- chr3:153748168:- chr3:154307346,chr3:154307353 chr3:154089534,chr3:154089539 NA NA chr3:154025135,chr3:154025142 chr3:153807323,chr3:153807328 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none DEAD/DEAH_box_helicase(37%)| DEAD(29%)| 5 1 3 131 15 ENST00000496811.6 ENST00000480639.6 upstream downstream duplicates(1) CAGAAGCACAGATATCCTGGTTTGCTCCTGAGGATCATGG___ATACGGTACTGAAGTTTCTACTAAGAACACACCATGCTCAGAGAACAAACTTGACATCCAG...TGGAACTTTAGACCAAAAATTATTGGAAGATTTACAAAAGAAAAAAAATGACCTTCGGTATATTGAAATGCAG___CATTTCAGAGAAAAGCTGCCTTCGTATGGAATGCAAAAG___GAATTGGTAAATTTAATTGATAACCATCAGGTAACAGTAATAAGTGGTGAAACTGGTTGTGGCAAAACCACTCAAGTTACTCAGTTCATTTTGGATAACTACATTGAAAGAGGAAAAGGATCTGCTTGCAGAATAGTTTGTACTCAGCCAAGAAGAATTAGTGCCATTTCA|CAGTGAAGGCAGTGAGGGGCTGTGGTGTGATCCAGGAGGCTGAGAATTATGCAGTGGGTGCTGTCACCTTGAAGACATCAGCGTGATCAGGCAGATCATCATG___GTACTGtATTTCCTGGtCACGATCTTAtTTTTCTTAATACCTCCACCGACATTTCAAATAGCGTCTCT GTLDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAIS|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8017 DHX36::ARHGEF26-AS1 ENSG00000174953.14::ENSG00000243069.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1397 TRUE 537 DHX36 ENSG00000174953.14 protein_coding - - chr3:154272546-154324487:- chr3:154309653:- chr3:153990335-154042276:- chr3:154027442:- ARHGEF26-AS1 ENSG00000243069.9 lncRNA - - chr3:154024401-154121347:- chr3:154030376:- chr3:153742190-153839136:- chr3:153748165:- chr3:154307346,chr3:154307353 chr3:154089534,chr3:154089539 NA NA chr3:154025135,chr3:154025142 chr3:153807323,chr3:153807328 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none DEAD/DEAH_box_helicase(37%)| DEAD(29%)| 1 0 1 131 15 ENST00000496811.6 ENST00000491862.6 upstream downstream none GAAATGCAG___CATTTCAGAGAAAAGCTGCCTTCGTATGGAATGCAAAAG___GAATTGGTAAATTTAATTGATAACCATCAGGTAACAGTAATAAGTGGTGAAAC...GTTGTGGCAAAACCACTCAAGTTACTCAGTTCATTTTGGATAACTACATTGAAAGAGGAAAAGGATCTGCTTGCAGAATAGTTTGTACTCAGCCAAGAAGAATTAGTGCCATTTCA|TGAAGGCAGTGAGGGGCTGTGGTGTGATCCAGGAGGCTGAGAATTATGCAGTGGGTGCTGTCACCTTGAAGACATC CGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAIS|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8068 MECP2::TMLHE ENSG00000169057.25::ENSG00000185973.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 790 TRUE 1405 TRUE 538 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154092184:- chrX:153287024-153402578:- chrX:153357642:- TMLHE ENSG00000185973.12 protein_coding - - chrX:155489011-155719098:- chrX:155524632:- chrX:154718672-154948759:- chrX:154754293:- chrX:154073662,chrX:154073667 chrX:155541373,chrX:155541375 NA NA chrX:153339113,chrX:153339118 chrX:154771034,chrX:154771036 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Gamma-butyrobetaine_hydroxylase-like__N-terminal(90%),Taurine_catabolism_dioxygenase_TauD__TfdA_family(100%) |GBBH-like_N(33%),TauD(100%) 51 31 94 423 355 ENST00000303391.11 ENST00000675642.1 upstream downstream duplicates(21),mismappers(1),mismatches(7) GTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT___GCTCCATAAAAATACAGACTCACCAGTTCCTGCTTTGATGTGACATGTGACTCCCCAGAATACACCTTGCTTCTGTAGACCAGCTCCAACAGGATTCCATGGTAGCTGGGATGTTAGGGCTCAG|AGCTGAAATATGCTAATACCGTGATGCGCTTTGATTACGTCTGGCTTCGAGACCACTGCCGCTCAGCATCGTGCTACAACTCTAAGACTCACCAGCGCAGCCTGGATACTGCCAGTGTGGATTTATGTATCAAGCCAAAGACCATTCGTCTGGATGAGACCACACTCTTTTTCACTT___GGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGGCAGAAACAAAAAGTCATCC MVAGMLGLr|aeic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8069 MECP2::TMLHE ENSG00000169057.25::ENSG00000185973.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 791 TRUE 1405 TRUE 538 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154097604:- chrX:153287024-153402578:- chrX:153363061:- TMLHE ENSG00000185973.12 protein_coding - - chrX:155489011-155719098:- chrX:155524632:- chrX:154718672-154948759:- chrX:154754293:- chrX:154073662,chrX:154073667 chrX:155541373,chrX:155541375 NA NA chrX:153339113,chrX:153339118 chrX:154771034,chrX:154771036 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Gamma-butyrobetaine_hydroxylase-like__N-terminal(90%),Taurine_catabolism_dioxygenase_TauD__TfdA_family(100%) |GBBH-like_N(33%),TauD(100%) 6 70 15 630 355 ENST00000453960.7 ENST00000675642.1 upstream downstream duplicates(15),low_entropy(2),mismatches(2) CTCTCGGAGAGAGGGCTGTGGTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT|AGCTGAAATATGCTAATACCGTGATGCGCTTTGATTACGTCTGGCTTCGAGACCACTGCCGCTCAGCATCGTGCTACAACTCTAAGACTCACCAGCGCAGCCTGGATACTGCCAGTGTGGATTTATGTATCAAGCCAAAGACCATTCGTCTGGATGAGACCACACTCTTTTTCACTT___GGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGGCAGAAACAAAAAGTCATCCAGCCTAGAATACTATGGAATGCTGAAATCTACCAGCAAGCCCAAGTTCCATCGGTAGATTGCCAGAGCTTCTTAGAAACC MAAAAAAAPSGGGGGGEEERl|aeic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8070 MECP2::TMLHE ENSG00000169057.25::ENSG00000185973.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1405 TRUE 538 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154092184:- chrX:153287024-153402578:- chrX:153357642:- TMLHE ENSG00000185973.12 protein_coding - - chrX:155489011-155719098:- chrX:155514265:- chrX:154718672-154948759:- chrX:154743926:- chrX:154073662,chrX:154073667 chrX:155541373,chrX:155541375 NA NA chrX:153339113,chrX:153339118 chrX:154771034,chrX:154771036 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Gamma-butyrobetaine_hydroxylase-like__N-terminal(17%),Taurine_catabolism_dioxygenase_TauD__TfdA_family(100%) |GBBH-like_N(0%),TauD(100%) 1 0 32 423 322 ENST00000303391.11 ENST00000675642.1 upstream downstream duplicates(5),mismatches(2) AAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT___GCTCCATAAAAATACAGACTCACCAGTTCCTGCTTTGATGTGACATGTGACTCCCCAGAATACACCTTGCTTCTGTAGACCAGCTCCAACAGGATTCCATGGTAGCTGGGATGTTAGGGCTCAG|GGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGGCAGAAACAAAAAGTCATCCAGCCTAGAATACTATGGAATGCTGAAATCTACCAGCAAGCCCAAGTTCCATCGGTAGATTGCCAGAGCTTCTTAGAAACCAACGAGGGACTGAAGAAGTTTCTGCAAAACTTTCTGCTCTATGGAATTGCATTCGTAGAAAATGTCCCTCCCACTCAAGAGCACACAGAGAAGTTGGCAGAAAGGATCAGCTTAATCA MVAGMLGLr|arwscd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8071 STS::PUDP ENSG00000101846.9::ENSG00000130021.15 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1406 FALSE NA STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7253336:+ chrX:7065278-7772399:+ chrX:7171377:+ PUDP ENSG00000130021.15 protein_coding - + chrX:6667865-7148158:- chrX:7033120:+ chrX:6585906-7066199:- chrX:6951161:+ chrX:7257198,chrX:7257196 chrX:7032235,chrX:7032230 NA NA chrX:7175239,chrX:7175237 chrX:6950276,chrX:6950271 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Sulfatase(6%)| HAD_2(100%),Hydrolase(100%),Sulfatase(0%)| 18 20 71 334 74 ENST00000217961.5 unknown downstream upstream duplicates(5),mismappers(2),mismatches(10) AGGACAATGGCGCAAGATCGTCTTCAGCTGTTCATAGC___...TGAACAGAGGATGAACAAGTGAAGTTGCAATCTCCTCCATCACAGCTCAGTTCCCCAACAACAGGATCACAAGCTGGAGATGCCTTTAAG___GAAGATGAAGATCCCTTTCCTCCTACTGTTCTTTCTGTGGGAAGCCGAGAGCCACGCAGCATCAAGGCCGAACATCATCCTGGTGATGGCTGACGACCTCGGCATTGGAGATCCTGGGTGCTATGGGAACAAAACTATCAG|CTGGATGCTTCCTGCCCTCAAAAATCAGACTCCAAGTTCTTCAACTTTGGGAGTCAGACCTTtGAATACAGACTGAAGGCTGCACTGTTGGCTTCCCTACTTTTGAGGCTTTGGGATTGGACTGACTTCCTGGATCCTCAGCTTGCAGATGGCCTATTGTGGGACCTCACCTTGTGACCAT___AGACCCTCATGCCCCAGGAATGGCTCAGCTCTGGCGTAATTCTGCAG MKIPFLLLFFLWEAESHAASRPNIILVMADDLGIGDPGCYGNKTIs|wmlpalknqtpssstlgvrplntd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4767 chrX:7147860-7147937:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8088 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 793 TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71728623:- chr3:71724565-71803924:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Eukaryotic_initiation_factor_4E(100%) |IF4E(100%) 13 12 28 76 50 ENST00000318789.11 ENST00000448225.5 upstream downstream duplicates(2),mismatches(2) CCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGTTGCGTGTCATGCAGTGGGACAGCACGTTGGTCCGGACCTCAAGCTACCCACGTTCTAGTCCCGCCTCTGTCATTTCCTAGAGCTGTGGCCTCGG___ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGAAAATCTACACAGTACAGACAGTACAG___ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|TRUE,TRUE|FALSE,TRUE|FALSE,TRUE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8089 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 794 TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71710484:- chr3:71724565-71803924:- chr3:71759635:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Eukaryotic_initiation_factor_4E(92%) |IF4E(58%) 5 10 17 76 182 ENST00000649528.3 ENST00000425534.8 upstream downstream duplicates(3) CGG___AACCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGAAAATCTACACAGTACAGACAGTACAG___ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAATGAGAGGAGAGAGGCGACCACTTTG___GGAAGAGGAGAGTAATGCAAAGGGTGGCGTATGGAAGATGAAAGTCCCCAAGGACAGCACG___TCCACAGTTTGGAAAGAGTTGCTGTTAGCAACCATCGGGGAACAGTTCACAGACTGTGCCGCAGCAG___ATGATGAAGTAATAGGAGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 TRUE|FALSE,FALSE|TRUE,FALSE|TRUE,FALSE,TRUE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8090 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71583571:- chr3:71003844-71633129:- chr3:71632722:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71728623:- chr3:71724565-71803924:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Eukaryotic_initiation_factor_4E(100%) |IF4E(100%) 1 2 3 93 50 ENST00000649528.3 ENST00000448225.5 upstream downstream none CCGGGAGTGCGTGTGTGCGCGCGTGTGTGCGCGAGTGAGTGTGTGCGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAGCGG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGT...TAGAGCTGTGGCCTCGG___ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAATGAGAGGAGAGAGGCGACCACTTT[gccca]G___GGAAGAGGAGAGTAATGCAAAGGGTGGCGTATGGAAGATGAAAGTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|TRUE,TRUE|FALSE,TRUE|FALSE,TRUE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8091 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71690165:- chr3:71724565-71803924:- chr3:71739316:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Eukaryotic_initiation_factor_4E(25%) |IF4E(0%) 1 0 4 76 413 ENST00000649528.3 ENST00000448225.5 upstream downstream duplicates(1) CCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAGCGG___AACCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|ATGATGAAGTAATAGGAGTTAGTGTCAGTGTTCGGGACCGAGAAGACGTCGTCCAAGTCTGGAATGTAAATGCCTCTTTAGTGGGTGAAGCGACTGTTTTAGAAAAGATCTATGAACTTCTGCCCCACATAACTTTTAAAGCAGTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8092 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581399:- chr3:71003844-71633129:- chr3:71630550:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71728623:- chr3:71724565-71803924:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |Eukaryotic_initiation_factor_4E(100%) |IF4E(100%) 0 1 31 15 50 ENST00000650231.1 ENST00000448225.5 upstream downstream duplicates(1),mismatches(2) CGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGGTAAGTCGAGGCGGCCGCGGGCGCGGGGTCCAGGGACACCGGAGAGCCCCAGGCGGCACTAGGGGTTCTCCGTCCCCAAAGAGCCAGCCGGGGTGGCGCGAGCCTAGCGATAAGGCACCGGGAGCGAGGAATGTGCCCATCCTCAGGCCG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGTTGCGTGTCATGCAGTGGGACAGCACGTTGGTCCGGACCTCAAGCTACCCACGTTCTAGTCCCGCCTCTGTCATTTCCTAGAGCTGTGGCCTCGG___ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|TRUE,TRUE|FALSE,TRUE|FALSE,TRUE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8093 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71583571:- chr3:71003844-71633129:- chr3:71632722:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71699708:- chr3:71724565-71803924:- chr3:71748859:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Eukaryotic_initiation_factor_4E(75%) |IF4E(27%) 0 1 1 93 190 ENST00000649528.3 ENST00000425534.8 upstream downstream none GTGCGTGTGTGCGCGCGTGTGTGCGCGAGTGAGgGTGTGCGCGGGGTGCGCGCGCGGGCGGGAGTGGGgGCGCGCGGGGAAAGGCgCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAGCGG|ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAA...GGGGAACAGTTCACAGACTGTGCCGCAGCAG___ATGATGAAGTAATAGGAGTTAGTGTCAGTGTTCGGGACCGAGAAGACGTCGTCCAAGTCTGGAATGTAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8094 PITRM1::ENSG00000288566 ENSG00000107959.17::ENSG00000288566.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PITRM1 ENSG00000107959.17 protein_coding - - chr10:3137728-3172841:- chr10:3170104:- chr10:3179920-3215033:- chr10:3212296:- ENSG00000288566 ENSG00000288566.1 lncRNA - - chr10:3200829-3210666:- chr10:3201367:- chr10:3243021-3252858:- chr10:3243559:- chr10:3167425,chr10:3167434 chr10:3207043,chr10:3207049 NA NA chr10:3209617,chr10:3209626 chr10:3249235,chr10:3249241 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 19 7 21 410 14 ENST00000380989.6 ENST00000663204.1 upstream downstream duplicates(2),low_entropy(1),mismatches(3) CGGCGGGCGGCAGGGCCTGTGTGTGCTGAGGCGGCTGAGCGGCGG___ACATGCACACCACAGAGCGTGGCGATGGAACAGTAACCGGGCTTGTGAGAGGGCTCTGCAGTATAAACTAGGAGACAAGATCCATGGATTCACCGTAAACCAG|CTAAATAAGCCCTGGCCCCGAGATGAGCAATGTCGCAGCAGTTAGAGCTCACCAACCATCAGACACCGCCCAACGGAACCCCATTCCAGCAGCCACCACTACAGCTTTGATTAGGCCAGAGACTGATTTCAGTAACTTTCTCCTAATTAAAAGACCCCCAAGCATGGACTGGTTCCAGCTGCTTTACAGAGGCTGAGCACTTGAGTGCCTCTGTGTCCTGAAAAGAACA GGRQGLCVLRRLSGGHAHHRAWRWNSNRACERALQYKLGDKIHGFTVNQ|lnkpwprdeqcrss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8095 TCF12::NKAIN2 ENSG00000140262.18::ENSG00000188580.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 795 TRUE 1409 TRUE 540 TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57166466:+ chr15:57210821-57591479:+ chr15:57458664:+ NKAIN2 ENSG00000188580.16 protein_coding + + chr6:123803865-124825640:+ chr6:124818387:+ chr6:124125010-125146786:+ chr6:125139533:+ chr15:57184917,chr15:57184600,chr15:57184598,chr15:57184641,chr15:57184644,chr15:57184643,chr15:57184674,chr15:57184681 chr6:124796184,chr6:124796225,chr6:124796220,chr6:124796565,chr6:124796565,chr6:124796565,chr6:124796949,chr6:124796949 NA NA chr15:57477115,chr15:57476798,chr15:57476796,chr15:57476839,chr15:57476842,chr15:57476841,chr15:57476872,chr15:57476879 chr6:125117330,chr6:125117371,chr6:125117366,chr6:125117711,chr6:125117711,chr6:125117711,chr6:125118095,chr6:125118095 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Na_K-Atpase_Interacting_protein(12%) |NKAIN(0%) 12 7 14 155 32 ENST00000267811.9 ENST00000368417.6 downstream upstream duplicates(1),mismappers(1),mismatches(2) GAGGAGGTACAACATCTTGGGGAACAAGTGGTCAACCAAGTCCTTCCTATGATTCATCTAGA___GGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGAGCCCATGAAGGCTTGTCCCCAACACCTTTCATGAACTCAAATCTGATGG___GAAAAACATCAGAGAGAGGCTCATTTTCCCTGTACAGCAGAGATACTGGATTACCAGGCTGTCAA|TTGATTTCATAGGTGGCTTTGACTCTTATGGCTATCAAGGGCCTCAGAAGACATCTCATTTACAACTACAGCCTATGTACAT___GTCAAAATAATACAGATGACTTCAGTATGTCAGCCCATGGACCTTTCAAAGAACTTTTTTCGCAGTGGCCTCCTGCATTTCATGAAGAGCAAGAAGCAACTGAGTTTAAATACATACACGTATTAACAAAACAAATGCAAAGCCTCTACATACAACACTG--ACACACACACACACACACGTGAGCACGCACACACCAATTCCACTTGACCTCCTCTTTCTAACTGAAACAGACAAATATGCAGGACACGCCCATCTTGGATTTCCTGAAAGCAGGCCCCTTTCTCCCAGGCCTTCGGAAAGTTCAGAAGGAGATGTGTTGATGCCCAACGGTTGC GGTTSWGTSGQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRDTGLPGCQ|lis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8096 TCF12::NKAIN2 ENSG00000140262.18::ENSG00000188580.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1409 TRUE 540 TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57091891:+ chr15:57210821-57591479:+ chr15:57384089:+ NKAIN2 ENSG00000188580.16 protein_coding + + chr6:123803865-124825640:+ chr6:124818387:+ chr6:124125010-125146786:+ chr6:125139533:+ chr15:57184917,chr15:57184600,chr15:57184598,chr15:57184641,chr15:57184644,chr15:57184643,chr15:57184674,chr15:57184681 chr6:124796184,chr6:124796225,chr6:124796220,chr6:124796565,chr6:124796565,chr6:124796565,chr6:124796949,chr6:124796949 NA NA chr15:57477115,chr15:57476798,chr15:57476796,chr15:57476839,chr15:57476842,chr15:57476841,chr15:57476872,chr15:57476879 chr6:125117330,chr6:125117371,chr6:125117366,chr6:125117711,chr6:125117711,chr6:125117711,chr6:125118095,chr6:125118095 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Na_K-Atpase_Interacting_protein(12%) |NKAIN(0%) 1 0 8 126 32 ENST00000267811.9 ENST00000368417.6 downstream upstream mismatches(1) CTGGACTTCAGTGCG___ATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAG___...GGTCAACCAAGTCCTTCCTATGATTCATCTAGA___GGTTTTACAGACAGCCCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGAGCCCATGAAGGCTTGTCCCCAACACCTTTCATGAACTCAAATCTGATGG|TTGATTTCATAGGTGGCTTTGACTCTTATGGCTATCAAGGGCCTCAGAAGACATCTCATTTACAACTACAGCCTATGTACAT___GTCAAAATAATACAGATGACTTCAGTATGTCAGCCCATGGACCTTTCAAAGAACTTTTTTCGCAGTGGCCcCCTG GQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLM|vDFIGGFDSYGYQGPQKTSHLQLQPMYMSK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8097 MYO15B::MAP3K3 ENSG00000266714.11::ENSG00000198909.8 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75596555:+ chr17:73583881-73622929:+ chr17:73592636:+ MAP3K3 ENSG00000198909.8 protein_coding + + chr17:63622415-63696305:+ chr17:63685517:+ chr17:61699775-61773665:+ chr17:61762877:+ chr17:75596891,chr17:75596891,chr17:75596888 chr17:63683116,chr17:63683117,chr17:63683110 NA NA chr17:73592972,chr17:73592972,chr17:73592969 chr17:61760476,chr17:61760477,chr17:61760470 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none Myosin_head_(motor_domain)(59%)|Protein_kinase_domain(100%) Myosin_head(40%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 8 1 16 23 61 ENST00000633867.1 ENST00000361733.8 downstream upstream mismatches(1) GTGGCCCTAGAGACGG___...GCTAGAGGGACCTGTGGCTGGGCAGGGCTGAGGTAGCCCGTGTGCTGTGCCGGATCCTTTAGACTTGACCCTGTTGGCTACACAGCATCAGCCCTGGGTATTACTCATCCCTGCGCCCTGGCCAGAATGAAGGAAGCCTCTGGGGTGGGGGGAGGGCACAGCCCCATGTGCCCACCTCACTGCCACATGCCCCCAGGCCCTGCGGGTGAATGGCCTGGAGCAACTGTGCAACAACCTCGCCAGCGAGCGCCTACAGCTCTTCTCCAGCCAGATGCTGCTGGCCCAGGAGGAG|ATGCTGGATCCCCTGAGCAGTGCAGAAAATTCCTTGTCTGGAAGCTGCCAATCCTTGGACAGGTCAGCAGACAG___CCCATCCTTCCGGAAATCACGAATGTCCCGTGCCCAGAGCTTCCCTGACAACAGACAGGAATACTCAG___ATCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 3 STE STE11 Q99759 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8098 SPG11::SORD2P ENSG00000104133.16::ENSG00000290387.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1410 TRUE 541 SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44633505:- chr15:44847016-44955886:- chr15:44925703:- SORD2P ENSG00000290387.1 lncRNA - - chr15:44825747-44884694:- chr15:44850387:- chr15:45117945-45176892:- chr15:45142585:- chr15:44631741,chr15:44631746 chr15:44852488,chr15:44852490 NA NA chr15:44923939,chr15:44923944 chr15:45144686,chr15:45144688 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 5 12 91 207 ENST00000684235.1 ENST00000561384.3 upstream downstream duplicates(1),low_entropy(1),mismatches(7) ATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTcTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAG___AGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAG___GCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAA|GAGAACTATCCTATCCCTGAACCAGGCCCAAATG___AGGTCTTGCTGAGGATGCATTCTGTTGGAATCTGTGGCTCAGATGTCCACTACTGGGAGTATGGTCGAATTGGGAATTTTATTGTGAAAAAGCCCATGGTGCTGGGACATGAAGCTTCGGGAACAGTCGAAAAAGTGGGATCATCGGTAAAGCACCTAAAACCAG___GTGATCGTG...TCGAATCTGGTGCTCCaCGAGAAAATGATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCCATCTTCTTCTGTGCCACACCCCCTGATGATGGGAACCTCTGCCAGTTCTATAAGCACAATGCAGCCTTTTGTTACAA FTALFTWEVERMGYTITLWDLETQGMQCsSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLR|relsyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8099 SPG11::SORD2P ENSG00000104133.16::ENSG00000290387.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1410 TRUE 541 SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44648866:- chr15:44847016-44955886:- chr15:44941064:- SORD2P ENSG00000290387.1 lncRNA - - chr15:44825747-44884694:- chr15:44850387:- chr15:45117945-45176892:- chr15:45142585:- chr15:44631741,chr15:44631746 chr15:44852488,chr15:44852490 NA NA chr15:44923939,chr15:44923944 chr15:45144686,chr15:45144688 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 0 1 3 130 207 ENST00000684235.1 ENST00000561384.3 upstream downstream duplicates(1),mismatches(1) ATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAG|GAGAACTATCCTATCCCTGAACCAGGCCCAAATG___AGGTCTTGCTGAGGATGCATTCTGTTGGAATCTGTGGCTCAGATGTCCACTACTGGGAGTATGGTCGAATTGGGAATTTTATTGTGAAAAAGCCCATGGTGCTGGGACATGAAGCTTCGGGAACAGTCGAAAAAGTGGGATCATCG GLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALE|enypipepgpnevllrmhsvgicgsdvhyweygrignfivkkpmvlgheasgtvekvgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8100 SPG11::SORD2P ENSG00000104133.16::ENSG00000259479.7 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1411 TRUE 542 SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44633505:- chr15:44847016-44955886:- chr15:44925703:- SORD2P ENSG00000259479.7 transcribed_unprocessed_pseudogene - - chr15:44827060-44861850:- chr15:44850387:- chr15:45119258-45154048:- chr15:45142585:- chr15:44631741,chr15:44631746 chr15:44852488,chr15:44852490 NA NA chr15:44923939,chr15:44923944 chr15:45144686,chr15:45144688 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 5 12 91 207 ENST00000684235.1 ENST00000558556.5 upstream downstream duplicates(1),low_entropy(1),mismatches(7) ATTCACTGCACTGTTTACTTGGGAAGTGGAAAGGATGGGCTATACCATTACCCTCTGGGATTTGGAGACCCAGGGCATGCAGTGTTcTTCCCTTGGCACAAAGTGTATTCCTGTAGACAGTAGTGGAGACCAGCAGCTGTGCTTTGTTTTGACAG___AGAATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAG___GCCGGGATAGAAAATCGTCAGCTGGACACAGTAAATTTCTTTTTGAAGAGCAAGGAAAATCTTTTTAATCCATCCTCAAAATCTTCTGTATCTGATCAGTTTGATCACTTGTCATCCCATTTATATTTAAGAA|GAGAACTATCCTATCCCTGAACCAGGCCCAAATG___AGGTCTTGCTGAGGATGCATTCTGTTGGAATCTGTGGCTCAGATGTCCACTACTGGGAGTATGGTCGAATTGGGAATTTTATTGTGAAAAAGCCCATGGTGCTGGGACATGAAGCTTCGGGAACAGTCGAAAAAGTGGGATCATCGGTAAAGCACCTAAAACCAG___GTGATCGTG...TCGAATCTGGTGCTCCaCGAGAAAATGATGAATTCTGCAAGATGGGCCGATACAATCTGTCACCTTCCATCTTCTTCTGTGCCACACCCCCTGATGATGGGAACCTCTGCCAGTTCTATAAGCACAATGCAGCCTTTTGTTACAA FTALFTWEVERMGYTITLWDLETQGMQCsSLGTKCIPVDSSGDQQLCFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENRQLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLR|relsyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8101 SPG11::SORD2P ENSG00000104133.16::ENSG00000259479.7 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1411 TRUE 542 SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44648866:- chr15:44847016-44955886:- chr15:44941064:- SORD2P ENSG00000259479.7 transcribed_unprocessed_pseudogene - - chr15:44827060-44861850:- chr15:44850387:- chr15:45119258-45154048:- chr15:45142585:- chr15:44631741,chr15:44631746 chr15:44852488,chr15:44852490 NA NA chr15:44923939,chr15:44923944 chr15:45144686,chr15:45144688 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 0 1 3 130 207 ENST00000684235.1 ENST00000558556.5 upstream downstream duplicates(1),mismatches(1) ATGGACTCTCTCTGATTTTGTTTGGTTTGACTCAAGAAGAGTTTTTAAACAGACTCATGATCCATGGAAGTGCCAGCACTGTGGACACTCTTTGTCATCTCAATGGCTGGGGAAGGTGCTCAATTCCCATACATGCACTAGAG|GAGAACTATCCTATCCCTGAACCAGGCCCAAATG___AGGTCTTGCTGAGGATGCATTCTGTTGGAATCTGTGGCTCAGATGTCCACTACTGGGAGTATGGTCGAATTGGGAATTTTATTGTGAAAAAGCCCATGGTGCTGGGACATGAAGCTTCGGGAACAGTCGAAAAAGTGGGATCATCG GLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALE|enypipepgpnevllrmhsvgicgsdvhyweygrignfivkkpmvlgheasgtvekvgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8102 EMB::SLC8A1-AS1 ENSG00000170571.12::ENSG00000227028.6 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1412 TRUE 543 EMB ENSG00000170571.12 protein_coding - - chr5:50396192-50443248:- chr5:50402286:- chr5:49692026-49739082:- chr5:49698120:- SLC8A1-AS1 ENSG00000227028.6 lncRNA + + chr2:39786453-40255209:+ chr2:40251684:+ chr2:40013593-40482349:+ chr2:40478824:+ chr5:50401982,chr5:50401985 chr2:40148083,chr2:40148080 NA NA chr5:49697816,chr5:49697819 chr2:40375223,chr2:40375220 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),ig(100%)| 10 1 8 72 12 ENST00000303221.10 ENST00000444629.5 upstream upstream none GTACAGTAGTAATGGGAGTGTAAAG___GTTCCTGTTGGTGTTCAAATGAATAAATATGTGATCAATGGAACATATGCTAACGAAACAAAGCTGAAGATAACACAACTTTTGGAGGAAGATGGGGAATCTTACTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGAAGAACACATTGAGCTTGTGGTGCTGAGCTATTTGGTGCCCCTCAAACCATTTCTTGTAATAGTGGCTGAGGTGATTCTTTTAGTGGCCACCATTCTGCTTTGTGAAAAGTACACACAAAAGAAAAAGAAGCACTCAG___ATGAGGGGAAAGAATTTGAGCAGATTGAACAGCT|GCAAGGGCAGTGACTGGAAGCTGGGAGAGAGGGTCAACAGCTGAATCTCAGCCTGATGGAGGCCACCATTTAATAAGTAAATACATGCACG___GCTATTTAGATCCTGCATCAGACAGGTCATCAGAAAACATGAAGCTAAATGCAGTAAAGAATTACTCTCTTGAACTCTTG YSSNGSVKVPVGVQMNKYVINGTYANETKLKITQLLEEDGESYWCRALFQLGESEEHIELVVLSYLVPLKPFLVIVAEVILLVATILLCEKYTQKKKKHSDEGKEFEQIEQl|qgq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8103 EMB::SLC8A1-AS1 ENSG00000170571.12::ENSG00000227028.6 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1412 TRUE 543 EMB ENSG00000170571.12 protein_coding - - chr5:50396192-50443248:- chr5:50428144:- chr5:49692026-49739082:- chr5:49723978:- SLC8A1-AS1 ENSG00000227028.6 lncRNA + + chr2:39786453-40255209:+ chr2:40251684:+ chr2:40013593-40482349:+ chr2:40478824:+ chr5:50401982,chr5:50401985 chr2:40148083,chr2:40148080 NA NA chr5:49697816,chr5:49697819 chr2:40375223,chr2:40375220 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 1 3 45 12 ENST00000303221.10 ENST00000444629.5 upstream upstream low_entropy(1),mismatches(1) CCCAG___ATTCGCCTTTTACAAGTCCACCTCTCAGAGAAGAAATAATGGCAAATAACTTTTCCTTGGAGAGTCATAACATATCACTGACTG|GCAAGGGCAGTGACTGGAAGCTGGGAGAGAGGGTCAACAGCTGAATCTCAGCCTGATGGAGGCCACCATTTAATAAGTAAATACATGCACG___GCTATTTAGATCCTGCATCAGACAGGTCATCAGAAAACATGAAGCTAAATGCAGTAAAGAATTACTCTCTTGAACTCTTGAAAATATCAAAAACATGAAGCTAAATGCAGTAAAGAATTAcTCTCTTGAACTCTTGAAAATATCA...ATGGTTTAAAAATTTCTTTTTTATTATTTCTAATTTTCCTTCAGAAAATTGTGAGTTTTAACCTACAACACATACACTCCAAGGTAATGCCACTCTAATGC PDSPFTSPPLREEIMANNFSLESHNISLT|gkgsdwklgervns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8104 UBA1::PFKFB1 ENSG00000130985.17::ENSG00000158571.11 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 796 TRUE 1413 TRUE 544 UBA1 ENSG00000130985.17 protein_coding + + chrX:47190861-47215128:+ chrX:47201610:+ chrX:47050260-47074527:+ chrX:47061009:+ PFKFB1 ENSG00000158571.11 protein_coding - - chrX:54932961-54998534:- chrX:54937724:- chrX:54959394-55024967:- chrX:54964157:- chrX:47201824,chrX:47201815 chrX:54944842,chrX:54944851 NA NA chrX:47061223,chrX:47061214 chrX:54971275,chrX:54971284 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ThiF_family(19%),Ubiquitin-activating_enzyme_E1_FCCH_domain(63%)|Histidine_phosphatase_superfamily_(branch_1)(32%) E1_FCCH(17%),ThiF(34%)|His_Phos_1(21%) 6 1 11 1153 24 ENST00000377351.8 ENST00000545676.5 downstream downstream duplicates(2),mismatches(2) GCCTGTTTGG___GCAGCTCTTCTGTGACTTTGGAGAGGAAATGATCCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCTATGGTTACCAAG___GACAACCCCGGTGTGGTTACCTGCCTGGATGAGGCCCGACACGGGTTTGAGAGCGGGGACTTTGTCTCCTTTTCAGAAGTACAGGGCATGGTTGAACTCAACGGAAATCAGCCCATGGAGATCAAAGTCCTGG|TCCTATGAGGATCTGGTTCAGCGTCTGGAGCCAGTGATAATGGAGCTAGAACGACAGGAGAATGTACTGGTGATCTGCCACCAGGCTGTCATGCGGTGCCTCCTGGCCTATTTCCTGGATAAAAGTTCAG___ATGAGCTTCCATATCTCAAGTGCCCTCTGCACACAGTGCTCAAACTCACTCCTGTGGCTTATG___GCTGCAAAGTGGAAT LFGQLFCDFGEEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFESGDFVSFSEVQGMVELNGNQPMEIKVL|vl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8105 UBA1::PFKFB1 ENSG00000130985.17::ENSG00000158571.11 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1413 TRUE 544 UBA1 ENSG00000130985.17 protein_coding + + chrX:47190861-47215128:+ chrX:47201610:+ chrX:47050260-47074527:+ chrX:47061009:+ PFKFB1 ENSG00000158571.11 protein_coding - - chrX:54932961-54998534:- chrX:54935009:- chrX:54959394-55024967:- chrX:54961442:- chrX:47201824,chrX:47201815 chrX:54944842,chrX:54944851 NA NA chrX:47061223,chrX:47061214 chrX:54971275,chrX:54971284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none ThiF_family(19%),Ubiquitin-activating_enzyme_E1_FCCH_domain(63%)|Histidine_phosphatase_superfamily_(branch_1)(12%) E1_FCCH(17%),ThiF(34%)|His_Phos_1(6%) 1 2 1 1153 43 ENST00000377351.8 ENST00000545676.5 downstream downstream none CCAACACCCCCCTGGAGGACCAGCTGCGAGTGGGTGAGTTCTGTCACAACCGTGGCATCAAGCTGGTGGTGGCAGACACGCGGGGCCTGTTTGG___GCAGCTC...AGAAGTACAGGGCATGGTTGAACTCAACGGAAATCAGCCCATGGAGATCAAAGTCCTGG|ATGAGCTTCCATATCTCAAGTGCCCTCTGCACACAGTGCTCAAACTCACTCCTGTGGCTTATG___GCTGCAAAGTGGAATCCATCTcCCTGAATGTGGAGGCCGTGAACACACACCGG...AGCCTGAG___AATGTGGACATCACCCGGGAACCTGAGGAAGCCCTGGATACTGTCCCAGCCCACTACTGAGCCCTTTCCAAGAAGT...TGCCTTGGCCTCACTGAGGCcCCCCACTTCCAGTGAAGAAGTCCTCCGCAACTCCCAAACAAGCCTCGCTTGtTGGCCGCAACCAAGGAGCTATCTAGCTC EVQGMVELNGNQPMEIKVL|dELPYLKCPLHTVLKLTPVAYGCKVESIsLNVEAVNTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8106 GPCPD1::AGBL1 ENSG00000125772.14::ENSG00000273540.5 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1414 TRUE 545 GPCPD1 ENSG00000125772.14 protein_coding - - chr20:5544439-5611006:- chr20:5598725:- chr20:5525085-5591652:- chr20:5579371:- AGBL1 ENSG00000273540.5 protein_coding + + chr15:86079871-87049169:+ chr15:86368105:+ chr15:86623102-87592400:+ chr15:86911336:+ chr20:5597142,chr20:5597144 chr15:86347281,chr15:86347279 NA NA chr20:5577788,chr20:5577790 chr15:86890512,chr15:86890510 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Starch_binding_domain(67%)|Zinc_carboxypeptidase(72%) CBM_20(51%)|Peptidase_M14(68%) 3 7 7 60 9 ENST00000379019.7 unknown upstream upstream none CACGACATCATAAAATAAATCCATCAGAATGACACCTTCTCAGGTTGCCTTTGAAATAAGAGGAACTCTTTTACCAG___GAGAAGTTTTTGCGATATGTGGAAGCTGTGATGCTTTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTCTTCCAGAGAATGACACAGGTGAAAG|AATCAATGGACCTACAAAGTCAGGAGGATAAAGATGCATCCAGGAATAGCACCAAGATGCCATAGCCCTAATATCACCATGG___...GGACTGGGGGTCTGAAGGTGAGGGAAGACAAAAACAGCACCACTAGA...___CAGAACAAGAGG...GGGAGAAAAACAGATGACTTTCAAAGAGAC MTPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGEr|ingptksgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8107 GPCPD1::AGBL1 ENSG00000125772.14::ENSG00000273540.5 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1414 TRUE 545 GPCPD1 ENSG00000125772.14 protein_coding - - chr20:5544439-5611006:- chr20:5598725:- chr20:5525085-5591652:- chr20:5579371:- AGBL1 ENSG00000273540.5 protein_coding + + chr15:86079871-87049169:+ chr15:86397366:+ chr15:86623102-87592400:+ chr15:86940597:+ chr20:5597142,chr20:5597144 chr15:86347281,chr15:86347279 NA NA chr20:5577788,chr20:5577790 chr15:86890512,chr15:86890510 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Starch_binding_domain(67%)|Zinc_carboxypeptidase(72%) CBM_20(51%)|Peptidase_M14(55%) 0 2 3 60 4 ENST00000379019.7 ENST00000441037.7 upstream upstream none GAACTCTTTTACCAG___GAGAAGTTTTTGCGATATGTGGAAGCTGTGATGCTTTGGGAAACTGGAATCCTCAAAATGCTGTGGCTCTTCTTCCAGAGAATGACACAGGTGAAAG|GACATCGTCCATATCAGGTGATCACTGCTCGAGTTCATCCAGGAGAGAGCAATGCCAGTTGGGTGATGAAGGGTACCTTGGAGTTCCTGGTCAGCAGTGACCCTGTGGCTAGGCTCTTGAGGGAAAACTTCATCTTCAAGATCATACCCATGCTCAACCCAGATGGTGTCATCAACGGCAA___CCACAGATGCTCACTGAGCGGGGAAGATTTGAACAGACAATGGCTTTC TLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGEr|tssisgdhcssssrreqcqlgdegylgvpgqq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8108 EMB::SLC8A1 ENSG00000170571.12::ENSG00000183023.19 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EMB ENSG00000170571.12 protein_coding - - chr5:50396192-50443248:- chr5:50402286:- chr5:49692026-49739082:- chr5:49698120:- SLC8A1 ENSG00000183023.19 protein_coding - + chr2:40097270-40611053:- chr2:40156608:+ chr2:40324410-40838193:- chr2:40383748:+ chr5:50401982,chr5:50401985 chr2:40148083,chr2:40148080 NA NA chr5:49697816,chr5:49697819 chr2:40375223,chr2:40375220 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),ig(100%)| 2 2 7 72 3 ENST00000303221.10 unknown upstream upstream duplicates(1) CACAACTTTTGGAGGAAGATGGGGAATCTTACTGGTGCCGTGCACTATTCCAATTAGGCGAGAGTGAAGAACACATTGAGCTTGTGGTGCTGAGCTATTTGGTGCCCCTCAAACCATTTCTTGTAATAGTGGCTGAGGTGATTCTTTTAGTGGCCACCATTCTGCTTTGTGAAAAGTACACACAAAAGAAAAAGAAGCACTCAG___ATGAGGGGAAAGAATTTGAGCAGATTGAACAGCT|GaAATTGACTGGCATCCTCCCCAAGGAACTTGTGCACTGGACTATAAGGAGACCTAACAAATATTAAGG??AAAAAAAAAACATTTCTATTTCAAGCTGCGGCTCCAATATCCA...CTACTATATAATGTGCATGTCTATGTATGCATGTTTTGTGTATCTTTGTCTTTGTATGTGTGTATGCCTCTGTGTACGTGCATACCTGATTTGTATGTGTGTGTCTGTGTTCGCACAATGCATGCATGTCTCTGCGTACCTGTG...ATTTTATTAATTAAATTGAATTAACTGCATTTGCACAAAATTTGATCATATTTTATTATAGGTTCTATAATAGAATTGCCTCCCAAACAACCAACTTTGGC QLLEEDGESYWCRALFQLGESEEHIELVVLSYLVPLKPFLVIVAEVILLVATILLCEKYTQKKKKHSDEGKEFEQIEQl|kltgilpkelvhwtirrpnky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8113 ATAD2B::UBXN2A ENSG00000119778.15::ENSG00000173960.14 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD2B ENSG00000119778.15 protein_coding - - chr2:23748664-23927123:- chr2:23875829:- chr2:23971534-24149993:- chr2:24098699:- UBXN2A ENSG00000173960.14 protein_coding + - chr2:23927285-24004909:+ chr2:23950120:- chr2:24150155-24227779:+ chr2:24172990:- chr2:23871426,chr2:23871433 chr2:23994691,chr2:23994695 NA NA chr2:24094296,chr2:24094303 chr2:24217561,chr2:24217565 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 8 2 0 77 5 ENST00000238789.10 unknown upstream downstream duplicates(1) TGGATATGTATTCAAGAGTGAAAAGGCGAAGAAAGTCACTAAGAAGAAATAGTTATGGGATACAAAATCATCATGAAGTTTCTACTGAGGGTGAAGAAGAAG___AATCTCAAGAGGAGGATGGAGATATAGAAGTTGAAGAGGCAGAAGGAGAAGAAAATGATAGACCATATAATTTGAGACAGAGAAAAACAGTGGATCGATACCAAGCACCTCCAATAG___TACCAGCTCATCAAAAAAAGAGGGAAAACACGCTGTTTGATATTCATAGATCTCCAGCAAGAAGAAGCCATATTAG|ATCTGACATCGCTGAGGATAAGTACCATGACTTACACATTTCCTGTATCCTTCACAGTGTGCAGCAAGTGCAAAGCAAAGAGTAGCGA DMYSRVKRRRKSLRRNSYGIQNHHEVSTEGEEEESQEEDGDIEVEEAEGEENDRPYNLRQRKTVDRYQAPPIVPAHQKKRENTLFDIHRSPARRSHIr|sdiaedkyhdlhiscilhsvqqvqske* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8114 SLC35B1::PRKCA ENSG00000121073.15::ENSG00000154229.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 799 TRUE 1416 FALSE NA SLC35B1 ENSG00000121073.15 protein_coding - - chr17:49700934-49709014:- chr17:49702858:- chr17:47778296-47786376:- chr17:47780220:- PRKCA ENSG00000154229.12 protein_coding + + chr17:66302613-66810743:+ chr17:66732688:+ chr17:64298731-64806861:+ chr17:64728806:+ chr17:49702723,chr17:49702729 chr17:66704519,chr17:66704513 NA NA chr17:47780085,chr17:47780091 chr17:64700637,chr17:64700631 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none UAA_transporter_family(98%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) EamA(70%),TPT(48%),UAA(78%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 2 0 7 763 8 ENST00000240333.12 ENST00000413366.8 upstream upstream low_entropy(1) CTGGGAATGG___GAATCCTGTTCACTGGGGAGCTCTGGGAGTTCTTGAGCTTTGCTGAAAGGTACCCTGCCATCATCTATAACATCCTGCTCTTTGGGCTGACCAGTGCCCTGGGTCAG___AGCTTCATCTTTATGACGGTTGTGTATTTTGGTCCCCTGACCTGCTCCATCATCACTACAACTCGAAAGTTCTTCACAATTTTGGCCTCTGTGATCCTCTTCGCCAATCCCATCAGCCCCATGCAGTGGGTGGGCAgTGTGCTTGTGTTCCTGG|AAAGCCAAACTTGGCCCTGCTGGCAACAAAGTCATCAGTCCCTCTGAAGACAGGAAACAACCTTCCAACAACCTTGACCGAGTGAAACTCACGGACTTCAATTTCCTCATGGTGTTGGGAAAGGGGAGTTTTGGAAAG___GTGATGCTTGCCGACAGGAAGGGCACAGAAGAACTGTATGCAATCAAAATCCTGAAGAAGGATGTGGTGATTCAGGATGATGACGTGGAGTGCACCATGGTAGAAAAGCGAGTCTTGGCCCTGCTTGACAAACCCCCGTTCTTGACGCAGCTGCACT LGMGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGsVLVFL|esqtwpcwqqshqsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-634 chr17:66787072-66787168:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C alpha type AGC PKC PKCa P17252 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8117 FAM172A::KIAA0825 ENSG00000113391.19::ENSG00000185261.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 801 TRUE 1417 FALSE NA FAM172A ENSG00000113391.19 protein_coding - - chr5:93617725-94111699:- chr5:94050731:- chr5:92953431-93447404:- chr5:93386436:- KIAA0825 ENSG00000185261.16 protein_coding - - chr5:94150851-94618604:- chr5:94154124:- chr5:93486556-93954309:- chr5:93489829:- chr5:94041438,chr5:94041447 chr5:94250522,chr5:94250528 NA NA chr5:93377143,chr5:93377152 chr5:93586227,chr5:93586233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Arb2_domain(1%)| Arb2(0%)| 2 3 3 32 5 ENST00000395965.8 ENST00000682413.1 upstream downstream low_entropy(1) GAACTAATGAAAAAAGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAA___AGGGACAGTTAAGACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGAGGCTCTAGGAGAG|GTGGGAAATGAAGAAGGATGAAACACTAGAAGAGGAAGAAAAAGCAATACTGGAGCACTTAAAACAAATTTGCA...TCTGCCTCAGATAACATAGAGGAACAGTAATCTGCAGAAAACAGCAACAGCTTTATTTTAGGAAACAATCCCATGTAATGGAGTAGGATTTTTTACCATAGTCAGAATGAACCTCATATGTGCTGTGAAGCATGAAACCAATGACTGAGTAATCTCTGTACTGAAAAGGAATACAGCACATAAAGGATAAGGTGCTACATATTTTTTTATTTTAAAAATAATTTCAAATGTTTTTCTTTCCCC ELMKKDEPPLDFPDTLEGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGE|vgneeg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA TRUE Lung adenocarcinoma,Breast invasive carcinoma LUNG,BREAST exact 93386436,93217176 TRUE,FALSE 93489829,93489829 TRUE,TRUE YES,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8119 GALK1::TRIM47 ENSG00000108479.13::ENSG00000132481.7 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 802 FALSE NA FALSE NA GALK1 ENSG00000108479.13 protein_coding - - chr17:75751594-75765236:- chr17:75762704:- chr17:73747675-73761317:- chr17:73758785:- TRIM47 ENSG00000132481.7 protein_coding - - chr17:75874164-75878581:- chr17:75876813:- chr17:73870245-73874662:- chr17:73872894:- chr17:75762662,chr17:75762666 chr17:75878170,chr17:75878175 NA NA chr17:73758743,chr17:73758747 chr17:73874251,chr17:73874256 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none GHMP_kinases_N_terminal_domain(100%),Galactokinase_galactose-binding_signature(100%)| GHMP_kinases_N(100%),GalKase_gal_bdg(100%)| 3 1 4 169 7 ENST00000225614.6 ENST00000254816.6 upstream downstream mismatches(1) CGCAGGGATGCCCTGTGGCATCATGGACCAGTTCATCTCACTTATGGGACAGAAAGGCCACGCGCTGCTCATTGACTGCAG___GTCCTTGGAGACCAGCCTGG...CACTCTCGGACCCCAAGCTGGCCGTGCTCATCACCAACTCTAATGTCCGCCACTCCCTGGCCTCCAGCGAGTACCCTGTGCGGCGGCGCCAATGTGAAGAAGTGGCCCGGGCGCTGGGCAAGGAAAGCCTCCGGGAGGTACAACTGGAAGAGCTAGAGG|GCTGAGCAGTCCAAAGTCCTGAGCGCCGTGGAGGACCGCATGGACGAGCTGGGTGCTGGCATTGCACAGTCCAGGCGCACAGTGGCCCTCATCAAG___gGcGCAGCCGTAGCAGAGCGGGAGAGGGTGAGCCG...GCCCTGGGCCTGGACCCCCGAGGGAGCTCAGCTTCACCAAATCATCCCAAGCTGTCCGTGCAGTGAGAGACATGCTGGCCGTGGCCTGC LSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELE|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8120 ZNF652::ABCC3 ENSG00000198740.9::ENSG00000108846.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 803 TRUE 1418 TRUE 546 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49361909:- chr17:47366568-47439835:- chr17:47439271:- ABCC3 ENSG00000108846.16 protein_coding + + chr17:50634777-50692253:+ chr17:50691092:+ chr17:48712138-48769614:+ chr17:48768453:+ chr17:49333419,chr17:49333403,chr17:49333398,chr17:49333397,chr17:49333380 chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772 NA NA chr17:47410781,chr17:47410765,chr17:47410760,chr17:47410759,chr17:47410742 chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none none none 1 5 0 7 82 ENST00000430262.3 ENST00000285238.13 upstream upstream none CAGGCCCCCGCCGCAGGGATGGACCGCCGAGGCGGCGGCCGGGGCGGCGGAGGCGGAGGCGGCCGGCCCGG|GGTCCTGGTCCTGGACAAAGGAGTAGTAGCTGAATTTGATTCTCCAGCCAACCTCATTGCAGCTAGAGGCATCTTCTACGGGATGGCCAGAGATGCTGGACTTGCCTAAAATATATTCCTGAGATTTCCTCCTGGCCTTTCCTGGTTTTCATCAGGAAGGAAAT...TGTAAAGTGCCTTACAGGGTAACTGTGCTGAATGCTgTAGATGAGGAAATGATCCCCAAGTGGTGAATGACACGCCTAAGGTCACAGCTAGTTTGAGCCAGTTAGACTAGTCCCCGGTCTCCCGATTCCCAACTGAGTGTTATTTGCACACTGCACTGTTTTCAAATAACGATTTTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8121 ZNF652::ABCC3 ENSG00000198740.9::ENSG00000108846.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1418 TRUE 546 ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49362413:- chr17:47366568-47439835:- chr17:47439775:- ABCC3 ENSG00000108846.16 protein_coding + + chr17:50634777-50692253:+ chr17:50691092:+ chr17:48712138-48769614:+ chr17:48768453:+ chr17:49333419,chr17:49333403,chr17:49333398,chr17:49333397,chr17:49333380 chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772 NA NA chr17:47410781,chr17:47410765,chr17:47410760,chr17:47410759,chr17:47410742 chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 0 4 0 0 82 ENST00000362063.6 ENST00000285238.13 upstream upstream none GCGCGGGGAGCCGGCGGTTATCTGGGCGGCGGAGCGCTCACAATGTGGCAGGAGACAGAAAAG|GGTCCTGGTCCTGGACAAAGGAGTAGTAGCTGAATTTGATTCTCCAGCCAACCTCATTGCAGCTAGAGGCATCTTCTACGGGATGGCCAGAGATGCTGGAC...AACACTGGGGGCACCTTAAGATTTTGCACCTGTAAAGTGCCTTACAGGGTAACTGTGCTGAATGCTTTAGATGAGGAAATGATCCCCAAGTGGTGAATGACACGCCTAAGGTCACAGCTAGTTTGAGCCAGTTAGACTAGTCCCCGGTCTCCCGATTCCCAACTGAGTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8124 FBXO36::RIF1 ENSG00000153832.12::ENSG00000080345.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1420 TRUE 547 FBXO36 ENSG00000153832.12 protein_coding + + chr2:229922302-230013119:+ chr2:229922609:+ chr2:230787018-230877835:+ chr2:230787325:+ RIF1 ENSG00000080345.18 protein_coding + + chr2:151409883-151508013:+ chr2:151445338:+ chr2:152266397-152364527:+ chr2:152301852:+ chr2:229935351,chr2:229935344 chr2:151443681,chr2:151443671 NA NA chr2:230800067,chr2:230800060 chr2:152300195,chr2:152300185 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none none |Nebulin(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 3 1 46 40 ENST00000373652.7 ENST00000444746.7 downstream upstream none CCGCCCCTTCCTGGTTGTCTTAGCGACGGCGGTGGCGTCCCAAGATGGCGTCGTGGCTGCCGGAGACTCTCTTTGAAACTGTAGGACAAGGCCCGCCGCCTAGCAAAGACTATTACCAGTTACTGGTCACCCGGTCTCAG|ACCAATGAAGTAAATCAAGGTGATGCCTT...ATTTTAGTGCCATCTATGGTGCATTGACTTTACCAGTAAACCACATTTTTTCAGAACAGAGATTTCCAGTG___GCCACCATGAAGACTTTGCTTAGAACTTGGTCAGAATTATATAGAGCATTTGCTCGTTGTGCTGCTTTGGTGGCAACAGCAGAAGAGAACTTGTGCTGTGAGGAACTTTCTTCCAAGATAATGTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8125 FBXO36::RIF1 ENSG00000153832.12::ENSG00000080345.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1420 TRUE 547 FBXO36 ENSG00000153832.12 protein_coding + + chr2:229922302-230013119:+ chr2:229922609:+ chr2:230787018-230877835:+ chr2:230787325:+ RIF1 ENSG00000080345.18 protein_coding + + chr2:151409883-151508013:+ chr2:151451606:+ chr2:152266397-152364527:+ chr2:152308120:+ chr2:229935351,chr2:229935344 chr2:151443681,chr2:151443671 NA NA chr2:230800067,chr2:230800060 chr2:152300195,chr2:152300185 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none |Nebulin(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 0 46 37 ENST00000283946.8 ENST00000444746.7 downstream upstream none CCGCCGCCTAGCAAAGACTATTACCAGTTACTGGTCACCCGGTCTCAG|AATTTGTTGTTCGTGGATAGAATTATTTATATTATTACTGTAATGGTTGATTG...TGAGCCCCTAGGGAAATTGACTTCTTTATTTAAACTTATTGTGAAAGTGATCTATTCTTTCCACACACTGAGCTTCAAGGAAGCACATTCTGATACCCTCT PPPSKDYYQLLVTRSQ|NLLFVDRIIYIITVMVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8128 METTL15::LINC02742 ENSG00000169519.21::ENSG00000249867.6 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1421 TRUE 548 METTL15 ENSG00000169519.21 protein_coding + + chr11:28108248-28527041:+ chr11:28113604:+ chr11:28129795-28548588:+ chr11:28135151:+ LINC02742 ENSG00000249867.6 lncRNA + + chr11:28702607-29064322:+ chr11:29037742:+ chr11:28724154-29085869:+ chr11:29059289:+ chr11:28156630,chr11:28156631 chr11:28968768,chr11:28968766 NA NA chr11:28178177,chr11:28178178 chr11:28990315,chr11:28990313 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none MraW_methylase_family(5%)| Methyltransf_5(0%)| 1 0 2 66 7 ENST00000532947.2 ENST00000513853.5 downstream upstream duplicates(1),mismatches(1) GTAGAATGTATAAAGAAcGCCTTTCATGTTGGTTGGAATCTGcCATACCTAATTTAGtaGTCTGaCCAAAtAGAATACcTACTACAGCAGAtAtATA...CAAACTCAAGCCCAGGAGTTACACAGATCTCAAGATAGAGATTTTGAAACTATGGCTAAATTACATATTCCAGTAATGGTGGATGAAGTTGTTCATTGTTTGTCACCACAAAAAGGACAG|TGACAATCCTTTGAAGTCATGAATATACAAGAGCATGAATAAGAGAAGAAAAGATGGAAGATAAAAAGCAGAAGG___CACTATTCACAAaAGCGAAGACATGGAATCAATCTAAATCCCCA QTQAQELHRSQDRDFETMAKLHIPVMVDEVVHCLSPQKGQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8130 METTL15::LINC02742 ENSG00000169519.21::ENSG00000249867.6 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1421 TRUE 548 METTL15 ENSG00000169519.21 protein_coding + + chr11:28108248-28527041:+ chr11:28113604:+ chr11:28129795-28548588:+ chr11:28135151:+ LINC02742 ENSG00000249867.6 lncRNA + + chr11:28702607-29064322:+ chr11:29044445:+ chr11:28724154-29085869:+ chr11:29065992:+ chr11:28156630,chr11:28156631 chr11:28968768,chr11:28968766 NA NA chr11:28178177,chr11:28178178 chr11:28990315,chr11:28990313 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none MraW_methylase_family(5%)| Methyltransf_5(0%)| 0 0 1 66 9 ENST00000532947.2 ENST00000513853.5 downstream upstream mismatches(2),multimappers(1) GTAGAATGTATAAAGAAcGCCTTTCATGTTGGTTGGAATCTGcCATACCTAATTTAGtaGTCTGaCCAAACAGAATACATACTACAGCAGAAAAATATAGAGAATATGAAGCCCGGGAGCAAACAGATtAAACTgAAGCCtAGGAGTTACAtAGATCTCAcGATAGAG...TAATGGTGGATGAAGTTGTTCATTGTTTGTCACCACAAAAAGGACAG|CACTATTCACAATAGCGAAGACATGGAATCAATCTAAATCCCCATCAATGACAGATTGGATAAAGAAAATGTGCTACATATACACAATGGAA...GCAGCCATAAAAAAAGAATGAGATCGTGTgTTTTGTGGGAACCAGGATGGAGCTGGAGGTTATTATCCTTAACAAGCTAATGCAGGAACAGAAAACCAAAT MVDEVVHCLSPQKGQ|hysq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8132 ATOH8::ELMOD3 ENSG00000168874.13::ENSG00000115459.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1422 TRUE 549 ATOH8 ENSG00000168874.13 protein_coding + + chr2:85751344-85791383:+ chr2:85781166:+ chr2:85978467-86018506:+ chr2:86008289:+ ELMOD3 ENSG00000115459.18 protein_coding + + chr2:85354394-85391752:+ chr2:85356967:+ chr2:85581517-85618875:+ chr2:85584090:+ chr2:85783311,chr2:85783311,chr2:85783312 chr2:85354467,chr2:85354475,chr2:85354465 NA NA chr2:86010434,chr2:86010434,chr2:86010435 chr2:85581590,chr2:85581598,chr2:85581588 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none Helix-loop-helix_DNA-binding_domain(100%)|ELMO/CED-12_family(100%) HLH(100%)|ELMO_CED12(100%) 0 1 2 13 107 ENST00000473116.1 ENST00000446464.7 downstream upstream none CCAGAATAACCTCTGCAAAGTCTGTCCCTTGGAGAAGATGTGAAAGCAGATCTGTCAAACGCAAGGATGTCCAGGCTTGAGTGTTAAAGAAAACACCAGTGCAGCTTATGATGCAGCTTGTACAGCGTAATTCCACTTTTCGTAAAATACTGTAT|AGCTGAGGCTTCGAAG...CACAAAGGGACTGTTTTCTTACTCTTAGTCTGAGTGACTGCCAAGGAAGGCAAAGGTAGAGCAACTGGATCTCTGGCTCTCCACATAGCTTCTGATCTCAGACCTTACTAAAATGCTTTCTGGGCCCAAGGACAAAGCTCACATGAACAAATGATTTTGAGTCATGAATGAAAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8133 ATOH8::ELMOD3 ENSG00000168874.13::ENSG00000115459.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1422 TRUE 549 ATOH8 ENSG00000168874.13 protein_coding + + chr2:85751344-85791383:+ chr2:85764182:+ chr2:85978467-86018506:+ chr2:85991305:+ ELMOD3 ENSG00000115459.18 protein_coding + + chr2:85354394-85391752:+ chr2:85356967:+ chr2:85581517-85618875:+ chr2:85584090:+ chr2:85783311,chr2:85783311,chr2:85783312 chr2:85354467,chr2:85354475,chr2:85354465 NA NA chr2:86010434,chr2:86010434,chr2:86010435 chr2:85581590,chr2:85581598,chr2:85581588 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Helix-loop-helix_DNA-binding_domain(100%)|ELMO/CED-12_family(100%) HLH(100%)|ELMO_CED12(100%) 0 1 1 27 107 ENST00000306279.4 ENST00000423095.7 downstream upstream duplicates(1) CTGTCCCTGGCGCGGCTGGCTGACCTTGACTACAGTGCCGACCACAGCAACCTCAGCTTCTCCGAGTGTGTGCAGCGCTGCACCCGCACCCTGCAGGCCGAGGGACGTGCCAAGAAGCGCAAG|AGCTGAGGCTTCGAAGACCTCAGAGGACTTCTCTCAGCACTCACAGAAACCTCCTACACCCTCGGATGGCACAAAGGGACTGTTTTCTTACTCTTAGTCTGAGTGACTGCCAAGGAAGGCAAAGGTAGAGCAACTGGA LSLARLADLDYSADHSNLSFSECVQRCTRTLQAEGRAKKRK|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8137 DRAIC::PAQR5 ENSG00000245750.11::ENSG00000137819.14 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1423 TRUE 550 DRAIC ENSG00000245750.11 lncRNA + + chr15:69462921-69843120:+ chr15:69628872:+ chr15:69755260-70135459:+ chr15:69921211:+ PAQR5 ENSG00000137819.14 protein_coding + + chr15:69298912-69407780:+ chr15:69379883:+ chr15:69591251-69700119:+ chr15:69672222:+ chr15:69656366,chr15:69656361,chr15:69656352 chr15:69368080,chr15:69368072,chr15:69368072 NA NA chr15:69948705,chr15:69948700,chr15:69948691 chr15:69660419,chr15:69660411,chr15:69660411 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Haemolysin-III_related(100%) |HlyIII(100%) 1 1 0 1 40 ENST00000645479.2 ENST00000395407.7 downstream upstream none CTGGCCTTTGCCCCACGGCCTTGGCTGCAGCACCATCACATGCCTCCACGCCTCTCCATCTCCTCATGAAGATCTCTCTCCAGATAGAGACCATTTCCTCCCTAGAGGAATCCTTGTACTATCCGTAG|GTGTTCCATGAGCAAGGCATCCTGTTCGGCTACCGCCATCCACAGAGTTCTGC...CAGCTACTCCTGGCCCATGCTTGTGTACATGTGCACCAGCTGCGTGTACCCACTTGTGTCCAGCTGTGCGCACACCTTCAGCTCTATGTCCAAGAATGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8138 DRAIC::PAQR5 ENSG00000245750.11::ENSG00000137819.14 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1423 TRUE 550 DRAIC ENSG00000245750.11 lncRNA + + chr15:69462921-69843120:+ chr15:69625192:+ chr15:69755260-70135459:+ chr15:69917531:+ PAQR5 ENSG00000137819.14 protein_coding + + chr15:69298912-69407780:+ chr15:69379883:+ chr15:69591251-69700119:+ chr15:69672222:+ chr15:69656366,chr15:69656361,chr15:69656352 chr15:69368080,chr15:69368072,chr15:69368072 NA NA chr15:69948705,chr15:69948700,chr15:69948691 chr15:69660419,chr15:69660411,chr15:69660411 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Haemolysin-III_related(100%) |HlyIII(100%) 0 0 0 5 40 ENST00000646247.2 ENST00000395407.7 downstream upstream mismatches(1) AGGAGACCTAAAAA|GTGTTCCATGAGCAAGGCATCCTGTTCGGCTACCGCCATCCACAGAGTTCTGCCACTGCCTGCATCCTCAGCCTTTTCCAAATGACCAATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8141 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71728623:- chr3:71008377-71803380:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(100%) 13 12 10 76 50 ENST00000318789.11 ENST00000647725.1 upstream downstream duplicates(2),mismatches(2) GCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGTTGCGTGTCATGCAGTGGGACAGCACGTTGGTCCGGACCTCAAGCTACCCACGTTCTAGTCCCGCCTCTGTCATTTCCTAGAGCTGTGGCCTCGG___ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8142 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71710484:- chr3:71008377-71803380:- chr3:71759635:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(58%) 5 10 4 76 182 ENST00000318789.11 ENST00000647725.1 upstream downstream duplicates(3) GCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGAAAATCTACACAGTACAGACAGTACAG___ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAATGAGAGGAGAGAGGCGACCACTTTG___GGAAGAGGAGAGTAATGCAAAGGGTGGCGTATGGAAGATGAAAGTCCCCAAGGACAGCACG___TCCACAGTTTGGAAAGAGTTGCTGTTAGCAACCATCGGGGAACAGTTCACAGACTGTGCCGCAGCAG___ATGATGAAGTAATAGGAGTTAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8143 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581399:- chr3:71003844-71633129:- chr3:71630550:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71728623:- chr3:71008377-71803380:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(100%) 0 1 11 15 50 ENST00000650231.1 ENST00000647725.1 upstream downstream mismatches(2) GAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGGGTAAGTCGAGGCGGCCGCGGGCGCGGGGTCCAGGGACACCGGAGAGCCCCAGGCGGCACTAGGGGTTCTCCGTCCCCAAAGAGCCAGCCGGGGTGGCGCGAGCCTAGCGATAAGGCACCGGGAGCGAGGAATGTGCCCATCCTCAGGCCG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGTTGCGTGTCATGCAGTGGGACAGCACGTTGGTCCGGACCTCAAGCTACCCACGTTCTAGTCCCGCCTCTGTCATTTCCTAGAGCTGTGGCCTCGG___ATCCCTCCCTGGTGCCACAGCAGCTGAGTGCGCATCAAATCTGAAGAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8144 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71583571:- chr3:71003844-71633129:- chr3:71632722:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71728623:- chr3:71008377-71803380:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(100%) 1 2 1 93 50 ENST00000649528.3 ENST00000647725.1 upstream downstream none CCGGGAGTGCGTGTGTGCGCGCGTGTGTGCGCGAGTGAGTGTGTGCGCGGGGTGCGCGCGCGGGCGGGAGTGGGCGCGCGCGGGGAAAGGCCCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAGCGG|GGGCTGTGGGGTCACCTTCTCTTCCTCTCTTCTGCCACCCCAAGTCGTCTGTGT...TAGAGCTGTGGCCTCGG___ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAATGAGAGGAGAGAGGCGACCACTTT[gccca]G___GGAAGAGGAGAGTAATGCAAAGGGTGGCGTATGGAAGATGAAAGTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8145 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71690165:- chr3:71008377-71803380:- chr3:71739316:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(0%) 1 0 3 76 413 ENST00000649528.3 ENST00000650530.1 upstream downstream duplicates(1) CCGAAAACACCTTAGTTTGCACCGAGAGACCATTTGCAGCGG___AACCCGAAAGTTTGTAAGAGGAAGAGAGCGCGCGGCGAGCGAGCGAGCGGGCCGGGGGCAGCGGCAGCGGCGCCGGGGACCATGGTGCTGCCGGCGCCTCCTCCGCGGGCGTGAAGGCGGCGCTCCTACTCCCTCCCCGGACTCCGCGG|ATGATGAAGTAATAGGAGTTAGTGTCAGTGTTCGGGACCGAGAAGACGTCGTCCAAGTCTGGAATGTAAATGCCTCTTTAGTGGGTGAAGCGACTGTTTTAGAAAAGATCTATGAACTTCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8146 FOXP1::ENSG00000285708 ENSG00000114861.24::ENSG00000285708.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1424 TRUE 551 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71583571:- chr3:71003844-71633129:- chr3:71632722:- ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71699708:- chr3:71008377-71803380:- chr3:71748859:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%),IF4E(27%) 0 1 0 93 190 ENST00000649528.3 ENST00000647725.1 upstream downstream none TTAGTTTGCACCGAGAGACCATTTGCAGCGG|ATATTTTGGAGTGTATACAATAATATCCCTCCTGTGACTAGCCTGCCTTTGAGATGTAGTTATCATTTAA...GGGGAACAGTTCACAGACTGTGCCGCAGCAG___ATGATGAAGTAATAGGAGTTAGTGTCAGTGTTCGGGACCGAGAAGACGTCGTCCAAGTCTGGAATGTAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8149 ZNF217::ENSG00000235415 ENSG00000171940.14::ENSG00000235415.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF217 ENSG00000171940.14 protein_coding - - chr20:53567071-53609907:- chr20:53571721:- chr20:52183610-52226446:- chr20:52188260:- ENSG00000235415 ENSG00000235415.1 lncRNA + - chr20:53608354-53634590:+ chr20:53632270:- chr20:52224893-52251129:+ chr20:52248809:- chr20:53571642,chr20:53571644 chr20:53633358,chr20:53633357 NA NA chr20:52188181,chr20:52188183 chr20:52249897,chr20:52249896 NA NA sense antisense stop-codon 3'UTR/splice-site intron duplication/5'-5' medium none Zinc_finger__C2H2_type(100%)| zf-C2H2(100%),zf-C2H2_6(100%)| 3 2 5 215 14 ENST00000371471.7 unknown upstream downstream duplicates(2) GCAGGACTGTGTGTATCCaTCGCAGGCGCTGCCTCCCAAACCAAGGTTCCTGAGCTCCAGCGAGGTCGATTCTCCAAATGTGCTGACTGTTCAGAAGCCCTATGGTGGCTCCGGGCCACTTTACACTTGTGTGCCTGCTGGTAGTCCAGCATCCAGCTCGACGTTAGAAG___GAAAAAGGCCTGTGTCATATCAACACTTATCTAACAGCATGGCACAAAAGAGAAACTATGAGAATTTTATTGGGAATGCACATTATCGACCAAATGACAAAAAAACTTGATTCACTAATTAGGGGGAAAAAAG|CTGTCACCTCCATGAAGACCAAGGTTTCTGTTTGCAGTAATGTGTCCTGACGTATCTGGCATACAGTAGGAGCTCAACAAAGATCAGTGGCGTGAATGGCACCTCTGAAGAGAAGAGCCCGGAGGGGAAGTTAGAGTGGAGCTGCAGAGAGTGCTTAGGAG...AGgATAACAACCAAGCACAATGTATAGAgCTTGTCTAAGtTCTTAACGAATTATTACTTTTTGAGACAACGTCTTGCTCTGTGGCCAAGGTGGGGTGCGAT...TGAAAATCTTTTTCGTGGACTTGAGGATGTACCGAGCCAGTGGAGTGGCTGGATGAAATGGGAACTCCACCGCAGGAAGTGGTGCTTTTCTCATGCTGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8154 PGM2L1::ARL14EP-DT ENSG00000165434.8::ENSG00000254532.2 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PGM2L1 ENSG00000165434.8 protein_coding - - chr11:74330316-74398433:- chr11:74338468:- chr11:74041361-74109478:- chr11:74049513:- ARL14EP-DT ENSG00000254532.2 lncRNA - - chr11:30044053-30322988:- chr11:30044455:- chr11:30065600-30344535:- chr11:30066002:- chr11:74338149,chr11:74338149,chr11:74338151 chr11:30053794,chr11:30053792,chr11:30053793 NA NA chr11:74049194,chr11:74049194,chr11:74049196 chr11:30075341,chr11:30075339,chr11:30075340 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Phosphoglucomutase/phosphomannomutase__C-terminal_domain(80%),Phosphoglucomutase/phosphomannomutase__alpha/beta/alpha_domain_I(100%),Phosphoglucomutase/phosphomannomutase__alpha/beta/alpha_domain_II(100%),Phosphoglucomutase/phosphomannomutase__alpha/beta/alpha_domain_III(100%)| PGM_PMM_I(100%),PGM_PMM_II(100%),PGM_PMM_III(100%),PGM_PMM_IV(6%)| 0 1 1 4 1 ENST00000298198.5 ENST00000662729.1 upstream downstream none AAATTTTGTGGAACATTTGCTATATTGCATGTACGGGACaTTACCACTGGATATGACAGTAGCCAGCCTAATAAGAAATCA___GTGCTGCCTGTGAGTAAAAA...AGcGGAACAGAACCAAAGATAAAGTATTATGCAGAGATGTGTGCGTCACCTGACCAGAG|ATGGTCTGAGAGTACCTGTGCTGAAATGGAATTGTCTTTGA...CAATAGCTCCTGAGGAACTGAAGCCTTCAGTTCAAAACTTGTGTGAGAAAAATGAATCTTGCCAACTACTGGAGTGAGCTTAGAAATGAATCCATCCCCAGTTGACCCTTGAATGTAGCCTTGTCAGAGACCCAGAGACAAAGCATC SGTEPKIKYYAEMCASPDQr|wsestcaemelsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8156 ATP8A2::RNF6 ENSG00000132932.19::ENSG00000127870.17 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP8A2 ENSG00000132932.19 protein_coding + + chr13:25371974-26025851:+ chr13:25968679:+ chr13:25946112-26599989:+ chr13:26542817:+ RNF6 ENSG00000127870.17 protein_coding - + chr13:26132115-26222314:- chr13:26157672:+ chr13:26706253-26796451:- chr13:26731810:+ chr13:25984586,chr13:25984587 chr13:26141469,chr13:26141467 NA NA chr13:26558724,chr13:26558725 chr13:26715607,chr13:26715605 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Cation_transport_ATPase_(P-type)(100%),E1-E2_ATPase(100%),Phospholipid-translocating_ATPase_N-terminal(100%),Phospholipid-translocating_P-type_ATPase_C-terminal(100%)| Cation_ATPase(100%),E1-E2_ATPase(100%),PhoLip_ATPase_C(100%),PhoLip_ATPase_N(100%)| 3 1 1 11 5 ENST00000381655.7 unknown downstream upstream none GTTTGTCTGAAAGCTGGTTTGGAGACCACAGCTTGGACTAAA___TTCAGTCATCTGGCTGTCTGGGGAAGCATGCTGACCTGGCTGGTGTTTTTTGGCATCTA...CCACCATTCCCATTGCTCCAGATATGAGAGGACAG___GCAACTATGGTCCTGAGCTCCGCAtACTTCTGGTTGGGATTATTTCTGGTTCCTACTGCCTGTTTG...GGAGATGGAACCTGGGTCATGCATGGAGACTGTGAAAGCTCCACCACTTCCCGAGCCTCGGCCTCCACCAAAGGGCATTTGGCTGTGGCCTGAGAGGGG...AGGAGCTGGAAACCAAGTCTCGAGTCCTGGGAAAAGCGGTGCTGCGGGATAGCAATGGAAAGAG|GTTGACAAAGATTAAAAGGATTGACCAATTCCAGCATCAGTGAGGACATGAAGAAATGTGAATCCTCAAGCTGACAGCATAATCTTTCTGGAAGATTATTTGACACTTGTATAAAAGTATAAACAGAGTGTGTCCTTTGGTCTAGAAACTTTACTCTGGTTAATTTATTGTAGT ELETKSRVLGKAVLRDSNGKr|ltkikridqfqhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8161 DRG1::LIMK2 ENSG00000185721.13::ENSG00000182541.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1426 TRUE 552 DRG1 ENSG00000185721.13 protein_coding + + chr22:31399604-31530634:+ chr22:31426772:+ chr22:31795590-31926620:+ chr22:31822758:+ LIMK2 ENSG00000182541.18 protein_coding + + chr22:31212239-31280080:+ chr22:31242322:+ chr22:31608225-31676066:+ chr22:31638308:+ chr22:31431394,chr22:31431391 chr22:31242034,chr22:31242032 NA NA chr22:31827380,chr22:31827377 chr22:31638020,chr22:31638018 NA NA sense sense unknown CDS intron duplication low none 50S_ribosome-binding_GTPase(100%),C-terminal_region_of_MMR_HSR1_domain(99%)|LIM_domain(75%),PDZ_domain(100%),PKC-activated_protein_phosphatase-1_inhibitor(100%),Protein_kinase_domain(100%) FeoB_N(100%),MMR_HSR1(100%),MMR_HSR1_Xtn(99%)|Kdo(100%),LIM(51%),PDZ(100%),PK_Tyr_Ser-Thr(100%),PP1_inhibitor(100%),Pkinase(100%) 0 0 5 849 2 ENST00000331457.9 unknown downstream upstream none ATGTGGTGGAAGGAAACAG___AGTTTATATCCCCTGTATCTATGTGTTAAATAAGATTGACCAAATCTCCATTGAGGAATTGGATATCATCTATAAGGTGCCTCACTGTGTACCCATCTCTGCCCATCACCGCTGGAATTTTGATGACCTATTGGAAAAGATCTGGGACTATCTGAAAC...|...AAAAGGATCATAAGGCTTCCTTTTTCCAGTATGTTTTTCCTCCTTTTTGAAAtCTGGGCCgGTTAGCTATCTCCATTTTTATTTCATGAATACATCCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN LIM domain kinase 2 TKL LISK LIMK P53671 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8162 DRG1::LIMK2 ENSG00000185721.13::ENSG00000182541.18 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1426 TRUE 552 DRG1 ENSG00000185721.13 protein_coding + + chr22:31399604-31530634:+ chr22:31427182:+ chr22:31795590-31926620:+ chr22:31823168:+ LIMK2 ENSG00000182541.18 protein_coding + + chr22:31212239-31280080:+ chr22:31258291:+ chr22:31608225-31676066:+ chr22:31654277:+ chr22:31431394,chr22:31431391 chr22:31242034,chr22:31242032 NA NA chr22:31827380,chr22:31827377 chr22:31638020,chr22:31638018 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication low none 50S_ribosome-binding_GTPase(100%),C-terminal_region_of_MMR_HSR1_domain(100%),TGS_domain(58%)|LIM_domain(73%),PDZ_domain(100%),PKC-activated_protein_phosphatase-1_inhibitor(100%),Protein_kinase_domain(100%) FeoB_N(100%),MMR_HSR1(100%),MMR_HSR1_Xtn(100%),TGS(5%)|Kdo(100%),LIM(5%),PDZ(100%),PK_Tyr_Ser-Thr(100%),PP1_inhibitor(100%),Pkinase(100%) 0 0 0 548 607 ENST00000331457.9 ENST00000331728.9 downstream upstream mismatches(1) CTGcGGcGcaAGCCTATaAATTgACTACTCTGACCACTGTGCCTGGTGTCATCAGAgACAAAGGTGCCAAGATCCAG___CTCCTGGATCgCCCAGGgATCATT...GAAGATTCACAAAAATCTTATCAAAGAATTTAAATA|GTGTTCAGAATGCCAGGATTCCCTCACCAACTGGTACTATGAGAAGGATGGGAAGCTCTACTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE LIM domain kinase 2 TKL LISK LIMK P53671 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8177 EZR::OSTCP1 ENSG00000092820.19::ENSG00000243775.2 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EZR ENSG00000092820.19 protein_coding - - chr6:158765741-158819368:- chr6:158818082:- chr6:159186773-159240400:- chr6:159239114:- OSTCP1 ENSG00000243775.2 transcribed_processed_pseudogene - - chr6:158841117-158857632:- chr6:158842139:- chr6:159262149-159278664:- chr6:159263171:- chr6:158816895,chr6:158816899 chr6:158850474,chr6:158850475 NA NA chr6:159237927,chr6:159237931 chr6:159271506,chr6:159271507 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 36 36 26 2134 70 ENST00000367075.4 ENST00000522287.1 upstream downstream duplicates(2),low_entropy(1),mismatches(6) GCGGGGAGCACACGGAGCACTGCAGGCGCCGG___GTTGGGACAGCGTCTTCGCTGCTGCTGGATAGTCGTGTTTTCGGGGATCGAGGATACTCACCAGAAACCGAAAATGCCGAAACCA|TGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCTGGCTGCAAGTGCTGTCGGCCATGATTGTGTATGCTCTGATGGTGGTGTCTTACTTCCTCGTCACTGGAGGAATAATTTATGATGTTATTGTTGAACCTCCAAGCATTGGCTCTATGACTGATGAACACGGGCATCAGAGGCCAGTAGCTTTCTTGGCCaACAGAGTAAATGAACAATGTATTATGGAAGGACTTGCATCCAGCTTCCTGTTTACAA MPKP|csnvpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ezrin 1 Yes NSCLC epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8183 BRIP1::VMP1 ENSG00000136492.10::ENSG00000062716.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 805 FALSE NA FALSE NA BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61859796:- chr17:59756500-59940920:- chr17:59937157:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ chr17:61859341,chr17:61859345 chr17:59814849,chr17:59814845 NA NA chr17:59936702,chr17:59936706 chr17:57892210,chr17:57892206 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none DEAD(2%)| 14 8 9 81 400 ENST00000259008.7 ENST00000710770.1 upstream upstream duplicates(2),mismappers(1) CGCTTTATTTGCTCTCAGAAGTCGGTTTCCTTTCCTTTTCTTCAGTGAATCGGAGCTCAGAGCGTTGCTTCGGTTTCCCTCCAGACAG___TTAGGAATCTGAAATAAACAGGAAAGCACTATGTCTTCAATGTGGTCTGAATATACAATTGGTGGGGTGAAGATTTACTTTCCTTATAAAGCTTACCCGTCACAGCTTGCTATGATGAATTCT___ATTCTCAGAGGATTAAACAGCAAGCAACATTGTTTGTTGGAGAGTCCCACAGGAAGTGGAAAAAGCTTAGCCTTACTTTGTTCTGCTTTAGCATGGCAACAATCTCTTAGTG|AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGC MSSMWSEYTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLS|eNFCYNNIQQAHSGANGGFHWCCPRHRSISAEAISGVPGGSTAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense FALSE NA NA NA NA NA NA NA NA NA 8184 TMEM104::CDK12 ENSG00000109066.14::ENSG00000167258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 806 TRUE 1430 TRUE 553 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74790296:+ chr17:72772638-72835892:+ chr17:72786435:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39530631:+ chr17:37617739-37723812:+ chr17:37686884:+ chr17:74790855,chr17:74790854 chr17:39527106,chr17:39527104 NA NA chr17:72786994,chr17:72786993 chr17:37683359,chr17:37683357 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high Mitelman Transmembrane_amino_acid_transporter_protein(12%)| Aa_trans(8%)| 6 11 14 144 161 ENST00000335464.10 ENST00000430627.6 downstream upstream duplicates(1),mismatches(4) GCTTCATGAG___CTTCGTGACCACCACCTTTGTGATAGAGGCCATGGCTGCAGCCAACGCGCAGCTCCACTGGAAGAGGATGGAGAACCTCAAG___GAGGAGGAAGATGACGACTCCTCCACAGCCTCAGACAGCGATGTTCTCATCCGGGACAACTACGAGCGGGCAGAGAAGCGGCCCATCCTGTCTGTGC|AGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAG FMSFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSV|qKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRPMEYSTRPRPNRTYGNTDGPET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 8185 TMEM104::CDK12 ENSG00000109066.14::ENSG00000167258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 807 TRUE 1430 TRUE 553 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74790296:+ chr17:72772638-72835892:+ chr17:72786435:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39530604:+ chr17:37617739-37723812:+ chr17:37686857:+ chr17:74790855,chr17:74790854 chr17:39527106,chr17:39527104 NA NA chr17:72786994,chr17:72786993 chr17:37683359,chr17:37683357 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high Mitelman Transmembrane_amino_acid_transporter_protein(12%)| Aa_trans(8%)| 5 9 15 144 139 ENST00000335464.10 ENST00000447079.6 downstream upstream duplicates(1),mismatches(2) CCATGGCTGCAGCCAACGCGCAGCTCCACTGGAAGAGGATGGAGAACCTCAAG___GAGGAGGAAGATGACGACTCCTCCACAGCCTCAGACAGCGATGTTCTCATCCGGGACAACTACGAGCGGGCAGAGAAGCGGCCCATCCTGTCTGTGC|CATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAA MAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSV|pCPPHILPPEKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 8186 PRKDC::SPIDR ENSG00000253729.9::ENSG00000164808.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKDC ENSG00000253729.9 protein_coding - - chr8:47773111-47960178:- chr8:47953620:- chr8:48685672-48872738:- chr8:48866180:- SPIDR ENSG00000164808.17 protein_coding + - chr8:47260878-47736306:+ chr8:47692390:- chr8:48173470-48648868:+ chr8:48604952:- chr8:47952384,chr8:47952393 chr8:47693232,chr8:47693238 NA NA chr8:48864944,chr8:48864953 chr8:48605794,chr8:48605800 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 8 8 11 77 23 ENST00000314191.7 unknown upstream downstream none AAAAAATACCAGATACAG___TTTTAGAAAAAGTATATGAGCTCCTAGGATTATTGGGTGAAGTTCATCCTAGTGAGATGATAAATAATGCAGAAAACCTGTTCCGCGCTTTTCTGGGTGAACTTAAGACCCAG___ATGACATCAGCAGTAAGAGAGCCCAAACTACCTGTTCTGGCAGGATGTCTGAAGGGGTTGTCCTCACTTCTGTGCAACTTCACTAAGTCCATGGAAGAAG|GAAACGTCCAGAACGGGCAAATCCACAGAGACGGAAAGCAGAGGAGTGGCTGCTGGGGGAGAGAAAGTGCGGAGCTCCTGCTGAAGGTACAAGGTTTCTTTCTGAGGTGATGAAAATG...GCTGGAGCGCAATGGCGTGATCTCGGCTCACTGCAAC KIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMTSAVREPKLPVLAGCLKGLSSLLCNFTKSMEE|gnvqngqihrdgkqrsgcwgresaelllkvqgfflr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE DNA-dependent protein kinase catalytic subunit Atypical PIKK DNAPK P78527 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8187 SEPTIN9::PLEKHA2 ENSG00000184640.20::ENSG00000169499.15 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEPTIN9 ENSG00000184640.20 protein_coding + + chr17:77280569-77500596:+ chr17:77402703:+ chr17:75276651-75496678:+ chr17:75398785:+ PLEKHA2 ENSG00000169499.15 protein_coding + - chr8:38901235-38973912:+ chr8:38937987:- chr8:38758753-38831431:+ chr8:38795505:- chr17:77405646,chr17:77405640 chr8:38951338,chr8:38951344 NA NA chr17:75401728,chr17:75401722 chr8:38808856,chr8:38808862 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 8 5 13 932 15 ENST00000427177.6 unknown downstream downstream mismatches(1) ACCGGCCCCTCGGAGGACGGAGATCACCATCGTCAAACCCCAGGAGTCAGCCCACCGGAGGATGGAGCCCCCTGCCTCCAAGGTCCCCGAGGTGCCCACTGCCCCTGCCACCGACGCAGCCCCCAAGAGGGTGGAGATCCAGATGCCCAAGCCTGCTGAGGCGCCCACCGCCCCCAGCCCAGCCCAGACCTTGGAGAATTCAGAGCCTGCCCCTGTGTCTCAGCTGCAGAGCAGGCTGGAGCCCAAGCCCCAGCCCCCTGTGGCTGAGGCTACACCCCGGAGCCAGGAGG|GGCCAGGGCCACACGCCCGTCCTCATCTTCCCATCACTGGCCCTCAGCAGACAGCAGAGAAGCACACACCCTGAACAGCCAGCCCACACGCAGCCCTCTGGCCAGGCCACCTGACACGGTGGCAAGCGCTCTCCTCCAAGAAGGAATACCTAAGAGTTAACAAATAATGACCTGGAATGCTGAGCTGGAGTCCAGCGCCTCTGAGGCTAAATGTCATTCTGGGAAAAACCCCTGCTTTCTGGCAGGGAGTCAGGC PAPRRTEITIVKPQESAHRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQE|gpgpharphlpitgpqqtaekhtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE septin 9 2 AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8188 TANC2::PSMD12 ENSG00000170921.16::ENSG00000197170.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 808 TRUE 1431 TRUE 554 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099357:+ chr17:61043596-61505064:+ chr17:61176718:+ PSMD12 ENSG00000197170.10 protein_coding - - chr17:67337916-67366605:- chr17:67350336:- chr17:65334032-65362721:- chr17:65346452:- chr17:63140617,chr17:63140618 chr17:67353115,chr17:67353095 NA NA chr17:61217978,chr17:61217979 chr17:65349231,chr17:65349211 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |26S_proteasome_regulatory_subunit_RPN5_C-terminal_domain(100%),PCI_domain(100%) |PCI(100%),RPN5_C(100%) 11 6 3 96 802 ENST00000689528.1 ENST00000356126.8 downstream downstream duplicates(3) GCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGACTCTCGCCAAAGCCGCTCTGGGCAAG___GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCTGTCCCGCCACTTCCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCATGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAGCCTGTGAAGAAGTTAACTG|GCTGTTGCCAAAATGGTTCAACAGTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAGGCAAG___ATTTATGTTGAAATTGAGCGTGCGCGACTGACT EEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSEGMQHIRIMEGMSRSLPSSPLLTHQSISVRLQPVKKLT|gccqngstvlylc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8189 TANC2::PSMD12 ENSG00000170921.16::ENSG00000197170.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 809 TRUE 1431 TRUE 554 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099246:+ chr17:61043596-61505064:+ chr17:61176607:+ PSMD12 ENSG00000197170.10 protein_coding - - chr17:67337916-67366605:- chr17:67350336:- chr17:65334032-65362721:- chr17:65346452:- chr17:63140617,chr17:63140618 chr17:67353115,chr17:67353095 NA NA chr17:61217978,chr17:61217979 chr17:65349231,chr17:65349211 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |26S_proteasome_regulatory_subunit_RPN5_C-terminal_domain(100%),PCI_domain(100%) |PCI(100%),RPN5_C(100%) 5 0 1 133 802 ENST00000424789.6 ENST00000356126.8 downstream downstream none CAGATGGAGGGAGCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGACTCTCGCCAAAGCCGCTCTGGGCAAG___GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCTGTCCCGCCACTTCCAGTGAGTGAAG|GCTGTTGCCAAAATGGTTCAACAGTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAGGCAAG___ATTTATGTTGAAATTGAGCGTGCGCGACTGAC DGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSE|gccqngstvlylc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8191 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 810 TRUE 1432 TRUE 555 TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37499908:+ chr14:37667099-38048330:+ chr14:37969113:+ chr14:37603872,chr14:37603873 chr14:37490763,chr14:37490761 NA NA chr14:38073077,chr14:38073078 chr14:37959968,chr14:37959966 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 3 8 5 22 24 ENST00000553443.6 ENST00000537471.7 downstream upstream none TTTTTTCTTTCCTCCTGAGAGCTTCAGACTAGAAAAGGGAAAAAGCCCCACTTTTGCTTCGTCACTAGAAACCGGGTCATCTGAGTCAGCCGAGCCAAGTGACGTTAGGCCGACCCGGGCCCCGGGCTAGCAGAGCGGAGGCGCTGCCACGAAACTCGTACCTGCGGCTAAGAGCAG|TTTACACAAATCTTTATCTCAAGAAGAAAATCTGAAGGATCAGTTTAACTATACCCTTAGTACATATGAAGAAGCTTTAAAAAACAGAGAGAACATTGTTTCCATCACTCAACAACAAAATGAGGAACTGGCTACTCAACTGCAACAAGCTCTGACAGAGCGAGCAAATATGGAATTACAACTTCAACATGCCAGAGAGGCCTCCCAAGTGGCCAATGAAAAAGTTCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 FALSE,FALSE|TRUE|TRUE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE|TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE|TRUE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE,TRUE|FALSE|FALSE|TRUE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE,TRUE|TRUE|FALSE,TRUE|FALSE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8192 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 811 TRUE 1432 TRUE 555 TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37546905:+ chr14:37667099-38048330:+ chr14:38016110:+ chr14:37603872,chr14:37603873 chr14:37490763,chr14:37490761 NA NA chr14:38073077,chr14:38073078 chr14:37959968,chr14:37959966 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 2 5 1 22 34 ENST00000553443.6 ENST00000327441.11 downstream upstream none TTCAACCCCGGGAGACTGGAGAATACAGACTTTTTTTTTTCTTTCCTCCTGAGAGCTTCAGACTAGAAAAGGGAAAAAGCCCCACTTTTGCTTCGTCACTA...GGGTCATCTGAGTCAGCCGAGCCAAGTGACGTTAGGCCGACCCGGGCCCCGGGCTAGCAGAGCGGAGGCGCTGCCACGAAACTCGTACCTGCGGCTAAGAGCAG|GTTGGAAAGGCTGGTGGATGTACTGAGGAAGAAGGTTGGAACCGGGACCATGAGGACAGTGATCTGATTGAAAAAAAACGACAGTCTGGGGAAGCGATCACATCTGGTGACCAGGCTGCTTCATTCAACACTGTGTAAACACCAAAGCCTTAACTTAGCAAACAGTTGTTAGAAGTGGGACACTCCAACCACATTCCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 TRUE,TRUE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE|FALSE|FALSE,FALSE,FALSE|FALSE,TRUE|TRUE,FALSE|TRUE|TRUE|FALSE,FALSE,FALSE|TRUE|FALSE|TRUE,FALSE,FALSE|FALSE|TRUE,FALSE|TRUE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8193 TOX3::GNAO1 ENSG00000103460.17::ENSG00000087258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 812 FALSE NA FALSE NA TOX3 ENSG00000103460.17 protein_coding - - chr16:52436417-52547802:- chr16:52463934:- chr16:52470329-52581714:- chr16:52497846:- GNAO1 ENSG00000087258.16 protein_coding + + chr16:56191390-56357444:+ chr16:56275931:+ chr16:56225302-56391356:+ chr16:56309843:+ chr16:52460550,chr16:52460553 chr16:56193793,chr16:56193790 NA NA chr16:52494462,chr16:52494465 chr16:56227705,chr16:56227702 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |G-protein_alpha_subunit(90%) |Arf(100%),G-alpha(48%) 5 5 3 59 35 ENST00000219746.14 ENST00000262493.12 upstream upstream none CGAAATTCCACCAATCACGCCTCCTCCAGAGTCAGACCCTGCCCTAGGCATGCCGGATGTACTGCTACCCTTTCAAGCCCTCAGCGATCCATTGCCTTCCCAGGGAAGTGAATTCACACCCCAGTTTCCCCCTCAAAGCCTGGACCTCCCTTCCATTACAATCTCAAGAAATCTCGTGGAACAAGATGGCGTGCTTCATAGCAGTGGGTTGCATATG|GATCATCCATGAAGATGGCTTCTCCGGAGAAGACGTGAAACAGTACAAGCCTGTTGTCTACAGCAACACTATCCAGTCCCTGGCAGCCATCGTCCGGGCCATGGACACTTTGGGCATCGAATATGGTGATAAGGAGAGAAAG___GCTGACGCCAAGATGGTGTGTGATGTGGTGAGTCGGATGGAAGACACCGAGCCCTTCT EIPPITPPPESDPALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHM|dhp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8194 MAP1LC3B::ZNF821 ENSG00000140941.14::ENSG00000102984.15 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 813 TRUE 1433 TRUE 556 MAP1LC3B ENSG00000140941.14 protein_coding + + chr16:87383953-87404779:+ chr16:87392467:+ chr16:87417559-87438385:+ chr16:87426073:+ ZNF821 ENSG00000102984.15 protein_coding - - chr16:71859680-71895336:- chr16:71868037:- chr16:71893583-71929239:- chr16:71901940:- chr16:87393442,chr16:87393437 chr16:71871188,chr16:71871193 NA NA chr16:87427048,chr16:87427043 chr16:71905091,chr16:71905096 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none |zf-C2H2(100%),zf-C2H2_4(100%) 4 8 1 620 62 ENST00000650688.1 ENST00000611294.4 downstream downstream mismatches(1) CCCGGGAGCCGCCGGGACCCTCGCGTCGTCGCCGCCGCCGCCGCCCAGATCCCcGCACCATGCCGTCGGAGAAGACCTTCAAGCAGCGCCGCACCTTCG|GGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCA___GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGA MPSEKTFKQRRTF|gDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8195 MAP1LC3B::ZNF821 ENSG00000140941.14::ENSG00000102984.15 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1433 TRUE 556 MAP1LC3B ENSG00000140941.14 protein_coding + + chr16:87383953-87404779:+ chr16:87392467:+ chr16:87417559-87438385:+ chr16:87426073:+ ZNF821 ENSG00000102984.15 protein_coding - - chr16:71859680-71895336:- chr16:71865048:- chr16:71893583-71929239:- chr16:71898951:- chr16:87393442,chr16:87393437 chr16:71871188,chr16:71871193 NA NA chr16:87427048,chr16:87427043 chr16:71905091,chr16:71905096 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none |zf-C2H2(100%),zf-C2H2_4(100%) 0 1 0 620 81 ENST00000650688.1 ENST00000313565.10 downstream downstream none GCACCATGCCGTCGGAGAAGACCTTCAAGCAGCGCCGCACCTTCG|GTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCtCACA...GAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAG___GTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTG MPSEKTFKQRRTF|gDSEGDEEETTQDEVSSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8196 CDYL::CDKAL1 ENSG00000153046.18::ENSG00000145996.11 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 814 TRUE 1434 TRUE 557 CDYL ENSG00000153046.18 protein_coding + + chr6:4706159-4955551:+ chr6:4776807:+ chr6:4706393-4955785:+ chr6:4777041:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20955419:+ chr6:20534688-21232635:+ chr6:20955650:+ chr6:4888078,chr6:4888076 chr6:20953265,chr6:20953260 NA NA chr6:4888312,chr6:4888310 chr6:20953496,chr6:20953491 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Chromo_(CHRromatin_Organisation_MOdifier)_domain(5%)|Radical_SAM_superfamily(77%),TRAM_domain(100%) Chromo(26%)|Radical_SAM(38%),TRAM(100%) 4 4 2 20 35 ENST00000397588.8 ENST00000274695.8 downstream upstream duplicates(1) GCTCGTCCGTGCCCAGCGCCCGGCCGGCCGCGGGAGCAGGAAGCGCAGGCCACGCAGGACCCAACTGAAACAAAGTGTCGGCCGCCCGGCGCCGGCGCCCGCCCCGACCCTGCCCCTCCCGCCCGCAACTCCGCCGCCCACCATGGCTTCCGAGGAGCTGTACGAG|AGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAG___GAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCG MASEELYE|rvfvryg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8197 CDYL::CDKAL1 ENSG00000153046.18::ENSG00000145996.11 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1434 TRUE 557 CDYL ENSG00000153046.18 protein_coding + + chr6:4706159-4955551:+ chr6:4776807:+ chr6:4706393-4955785:+ chr6:4777041:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:21000227:+ chr6:20534688-21232635:+ chr6:21000458:+ chr6:4888078,chr6:4888076 chr6:20953265,chr6:20953260 NA NA chr6:4888312,chr6:4888310 chr6:20953496,chr6:20953491 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Chromo_(CHRromatin_Organisation_MOdifier)_domain(5%)|Radical_SAM_superfamily(45%),TRAM_domain(100%) Chromo(26%)|Radical_SAM(22%),TRAM(100%) 0 2 0 20 107 ENST00000397588.8 ENST00000274695.8 downstream upstream none CCTGCCCCTCCCGCCCGCAACTCCGCCGCCCACCATGGCTTCCGAGGAGCTGTACGAG|GAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAA___AGTTCC MASEELYE|EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8201 MTMR4::CUEDC1 ENSG00000108389.10::ENSG00000180891.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 815 FALSE NA FALSE NA MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58504050:- chr17:56566890-56595266:- chr17:56581411:- CUEDC1 ENSG00000180891.13 protein_coding - - chr17:57861243-57955412:- chr17:57871369:- chr17:55938604-56032773:- chr17:55948730:- chr17:58504006,chr17:58503486,chr17:58504008 chr17:57871645,chr17:57871764,chr17:57871644 NA NA chr17:56581367,chr17:56580847,chr17:56581369 chr17:55949006,chr17:55949125,chr17:55949005 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Myotubularin-like_phosphatase_domain(99%)| Myotub-related(96%)| 5 3 0 145 256 ENST00000323456.9 ENST00000581898.5 upstream downstream none CCTGCCTCTACGGCACCTTCCTGGCCAACAACCCCTGTGAGCGAGAGAAGCGCAACATCTACAAGCGGACCTGCTCTGTGTGGGCGCTCCTTCGAGCTGGCAATAAAAACTTTCATAACTTCCTCTACACACCCAGCTCAGACATG|ATCGATTGAAATACGAATCCCAGAAATCTAAATCCAGCAGCGTGGCTGTCGGAAACGACTTTGGCTTTTCCTCTCCTGTCCCAG___ATGgAG CLYGTFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFLYTPSSDM|id* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8205 ELOVL5::KLHL31 ENSG00000012660.14::ENSG00000124743.6 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 816 FALSE NA FALSE NA ELOVL5 ENSG00000012660.14 protein_coding - - chr6:53267398-53349179:- chr6:53348817:- chr6:53132196-53213977:- chr6:53213615:- KLHL31 ENSG00000124743.6 protein_coding - - chr6:53647916-53665756:- chr6:53652330:- chr6:53512714-53530554:- chr6:53517128:- chr6:53312708,chr6:53312710 chr6:53652587,chr6:53652586 NA NA chr6:53177506,chr6:53177508 chr6:53517385,chr6:53517384 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Kelch_motif(84%) |DUF1668(100%),Kelch_1(31%),Kelch_2(100%),Kelch_4(100%),Kelch_6(9%) 1 3 2 448 4 ENST00000370918.8 ENST00000370905.4 upstream downstream none CGCGGGTCCTAGCCACCGGTGTCTCCTTCTACATCCGCCTCTGCGCCGGCTGCCACCCGCGCTCCCTCCGCCGCCGCCGCCTTGCTGCTGCTCAAAGCTGCTGCCGCCCCTTGGGCTAAAAG|ATACGATCCCCGCTTCAACACCTGGATACACCTGGCCAGCATGAACCAGAAGCGCACGCACTTCAGCCTGAGCGTGTTCAACGGGCTCGTGTACGCCGCGGGCGGCCGCAACGCAGAAGGAAGCCTGGCCTCGCTGGAGTGCTACGTGCCCTCCACCAATCAGTG...TAGCGCGGTCGCCGACGGCCGCGTGCTGGTGACCGGAGGCTACATcGCCAACGCCTACTCGCGCTCTGTGTGCGCCTACGACCCGGCCAGCGACTCGTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8206 AHCY::RTN4 ENSG00000101444.13::ENSG00000115310.19 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHCY ENSG00000101444.13 protein_coding - - chr20:34280268-34311802:- chr20:34291419:- chr20:32868074-32899608:- chr20:32879225:- RTN4 ENSG00000115310.19 protein_coding - - chr2:54972187-55112621:- chr2:55109028:- chr2:55199323-55339757:- chr2:55336164:- chr20:34291070 chr2:55109297 NA NA chr20:32878876 chr2:55336433 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none S-adenosyl-L-homocysteine_hydrolase(100%)|Reticulon(100%) AdoHcyase(53%)|Reticulon(100%) 3 3 0 594 9 ENST00000538132.1 unknown upstream downstream none CGACCTCACCAACCTCATCCACACCAAGTACCCGCAGCTTCTGCCAG___GCATCCGAGGCATCTCTGAGGAGACCACGACTGGGGTCCACAACCTCTACAAGATGATGGCCAATGGGATCCTCAAGGTGCCTGCCATCAATGTCAATGACTCCGTCACCAAG|AAATTGTACTTGGAGACGTGTCCAGCTGAGCCTGCTGTCACTTGGAAACGCTGCAGACCTGAAAAAGCTGCTGGCCTTGATCTTCTCTTTGCACAGAGTTTCCTTAGG DLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK|klyletcpaepavtwkrcrpekaagldllfaqsfl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8208 TANC2::MTMR4 ENSG00000170921.16::ENSG00000108389.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 818 FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63340332:+ chr17:61043596-61505064:+ chr17:61417693:+ MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58504488:- chr17:56566890-56595266:- chr17:56581849:- chr17:63346873,chr17:63346894,chr17:63346885,chr17:63346884,chr17:63346886 chr17:58505075,chr17:58505075,chr17:58505084,chr17:58505084,chr17:58505084 NA NA chr17:61424234,chr17:61424255,chr17:61424246,chr17:61424245,chr17:61424247 chr17:56582436,chr17:56582436,chr17:56582445,chr17:56582445,chr17:56582445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |FYVE_zinc_finger(100%),Myotubularin-like_phosphatase_domain(21%) FLYWCH_u(100%)|FYVE(100%),Myotub-related(12%) 1 1 2 44 80 ENST00000689528.1 ENST00000323456.9 downstream downstream none GCTTGGTGCCAGAATTTGTCCACAATGTTGCTGCCTTGCTCTGCCGCTCACCTCAGCTGACAGCCTATCGGGAGCAGCTTCTTCGGGAACCTCACCTGCAGAGCATGCTG...GTTCCTGTGTTCAAGACCCCATGGCCTCCTTCCGGAGGGGAGTTCTGGAGCCACTAGAAAATCTCCATAAAG|GGCTTCCAAGTGTTAGTGGAGTCTGACTGGCTGGATTTTGGGCACAAGTTTGGAGATCGCTGTGGCCACCAAGAGAATGTGGAGGACCAAAACGAACAATGCCCTGTGTTCCTCCAGTGGCTTGATTCTGTTCATCAGTTGCTTAAGCAGTTCCCCTGCCTGTTTGAATTTAATGAAGCATTCCTG___GTAAAACTGGTGCAACACACATACTCCTGCCTCTACGGCACCTTCCTGGCCAACAACCCCTGTGAGCGAGAG SCVQDPMASFRRGVLEPLENLHK|glpsvsgv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8209 UBAP2::ZCCHC7 ENSG00000137073.24::ENSG00000147905.18 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBAP2 ENSG00000137073.24 protein_coding - - chr9:33921693-34049388:- chr9:33932562:- chr9:33921691-34049386:- chr9:33932560:- ZCCHC7 ENSG00000147905.18 protein_coding + - chr9:37120574-37358149:+ chr9:37276471:- chr9:37120571-37358146:+ chr9:37276468:- chr9:33929041,chr9:33929058 chr9:37316238,chr9:37316517 NA NA chr9:33929039,chr9:33929056 chr9:37316235,chr9:37316514 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquitin-associated_protein_2_(100%)| DUF3697(100%)| 1 1 2 285 3 ENST00000379239.9 unknown upstream downstream none CTAGACA___CTACTTCATCTGTTCCAGCTCCAAAGACAACAGGCCCTCCCTCTGCCCTCCCGTCTGTGAGCTCCCTGCCCAGCACCACCTCCTGCACTGCACTTCTGCCGTCCACATCCCAGCACACTGGCGACCTGACTAGCAGCCCTCTCTCTCAGCTTAGCAG___TTCGCTCTCCAGCCACCAGAGCAGCCTCTCTGCACATGCAGCCCTCTCCTCGAGCACGTCACACACA|ATAAGTAAACTGAAGCTCGAAGCTGGCCATGGTCACATAGTAG___ATGAAGACCAGTGGGACAATGGAGCACAGAACAGAGGAAATATGTCAAGTGTCAGCATATGCACTAAGCAGC...TGAATACCTGGGACAGACGTGGACAACACAGGGCACTCAAGGCAGTGGCCAGGACTGAGCCCAGATTGGCAATGGCAATGATGGCAGCAGCCCCATGAAAG LDTTSSVPAPKTTGPPSALPSVSSLPSTTSCTALLPSTSQHTGDLTSSPLSQLSSSLSSHQSSLSAHAALSSSTSHT|isklkleaghghivdedqwdngaqnrgnmssvsictkq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8210 TANGO6::CES4A ENSG00000103047.8::ENSG00000172824.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 819 FALSE NA FALSE NA TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:69040421:+ chr16:68877434-69119085:+ chr16:69074324:+ CES4A ENSG00000172824.17 protein_coding + + chr16:66988589-67010417:+ chr16:67000638:+ chr16:67022492-67044320:+ chr16:67034541:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%)|Carboxylesterase_family(88%) RTP1_C1(100%)|Abhydrolase_3(100%),COesterase(64%) 0 2 1 20 4 ENST00000261778.2 ENST00000648724.3 downstream upstream none GTGAAGTTCAAGTACGCAGAGCTGCCATACATGTGGTTGTGCTGCTGCTTCGGGGACTCAGCCAGAAAGCTACTGAG|GTGCCTGCAGGAGTCCTGGGGCCAGCTGGCCTCGATGTACGTCAGCACGCGGGAACGGTACAAGTGGCTGCGCTTCAGCGAGGACTGTCTGTACCTGAAC EVQVRRAAIHVVVLLLRGLSQKATE|vpagvlgpagldvrqhagtvqvaalqrglsvpe NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8220 SUPT4H1::ANKFN1 ENSG00000213246.7::ENSG00000153930.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SUPT4H1 ENSG00000213246.7 protein_coding - - chr17:58345175-58353093:- chr17:58347188:- chr17:56422536-56430454:- chr17:56424549:- ANKFN1 ENSG00000153930.13 protein_coding + - chr17:55882301-56517016:+ chr17:56241271:- chr17:53959662-54594377:+ chr17:54318632:- chr17:58346334,chr17:58346337 chr17:56242971,chr17:56242971 NA NA chr17:56423695,chr17:56423698 chr17:54320332,chr17:54320332 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Spt4/RpoE2_zinc_finger(100%)| Spt4(100%)| 2 1 1 809 2 ENST00000577396.5 unknown upstream downstream none CGTCTATCTCCCTGTTGTTCTTCCCATCGGCGAAGATGGCCCTGGAGACGGTGCCGAAGGACCTGCGGCATCTGCGGGCCTGTTTGCTGTGTTCGCTGGTC...GTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTCA___GTAACTTTAAGCCAGGTGTATATGCGGTGTCAGTCACTGGTCGCCTGCCCCAAG|AACAGGGTCTCACTCTGTTGGTCAAGCTGGAGTGCAGTGGCACAATCATAGCTCACTGCAGACTTGAACTCTTAGGCTCAAGTGATCCTCCTGCCTCAGCCTCCAGAAAATGTAACTTTCATATAGATAAAAAACACAAATGTGAAATCAAAACTTTAAAACTT PEDSWVSKWQRVSNFKPGVYAVSVTGRLPQ|eqgltllvklecsgtiiahcrlellgssdppasasrkcnfhidkkhkceiktlk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8224 ENSG00000285897::ANKFN1 ENSG00000285897.1::ENSG00000153930.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285897 ENSG00000285897.1 protein_coding - - chr17:58345206-58417595:- chr17:58347188:- chr17:56422567-56494956:- chr17:56424549:- ANKFN1 ENSG00000153930.13 protein_coding + - chr17:55882301-56517016:+ chr17:56241271:- chr17:53959662-54594377:+ chr17:54318632:- chr17:58346334,chr17:58346337 chr17:56242971,chr17:56242971 NA NA chr17:56423695,chr17:56423698 chr17:54320332,chr17:54320332 NA NA sense antisense unknown 3'UTR/splice-site intron deletion/5'-5' medium none none Spt4(100%),ZNRF_3_ecto(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_11(100%),zf-RING_2(100%),zf-RING_UBOX(100%)| 1 1 1 809 2 ENST00000648873.1 unknown upstream downstream none GTCCAGAGGACAGCTGGGTCTCCAAGTGGCAGCGAGTCA___GTAACTTTAAGCCAGGTGTATATGCGGTGTCAGTCACTGGTCGCCTGCCCCAAG|AACAGGGTCTCACTCTGTTGGTCAAGCTGGAGTGCAGTGGCACAATCATAGCTCACTGCAGACTTGAACTCTTAGGCTCAAGTGATCCTCCTGCCTCAGCCTCCAGAAAATGTAACTTTCATATAGATAAAAAACACAAATGTGAAATCAAAACTTTAAAACTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8229 UQCC1::ENSG00000265303 ENSG00000101019.22::ENSG00000265303.1 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UQCC1 ENSG00000101019.22 protein_coding - - chr20:35302566-35412031:- chr20:35314688:- chr20:33890369-33999834:- chr20:33902491:- ENSG00000265303 ENSG00000265303.1 protein_coding + - chr17:59197566-59215226:+ chr17:59200046:- chr17:57274927-57292587:+ chr17:57277407:- chr20:35313376,chr20:35313249 chr17:59209084,chr17:59209420 NA NA chr20:33901179,chr20:33901052 chr17:57286445,chr17:57286781 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Ubiquinol-cytochrome_C_chaperone_(62%)| Ubiq_cyt_C_chap(86%)| 2 0 0 121 0 ENST00000374380.6 unknown upstream downstream none GAGAAAACTGACTTCGAGGAATTCTTTCTAA___GGTGTCAGATGCCTGATACATTCAATTCATGGTTTCTTATAACCCTACTCCACGTCTG___GATGTGTCTAGT...GGTTAATCCCTATATCCTGAAGAAGAACATGATCCTCATGACAAATCATTTCTATGCAGCGATCTTGGGATATGATGAG|AGTTCTCAACTCACTGTACCTGCTATGAAGTAGGGGCAGTGACAACAAAGATCTTAGAGCTAAA VNPYILKKNMILMTNHFYAAILGYDE|ssqltvpamk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8231 MED13::BRIP1 ENSG00000108510.10::ENSG00000136492.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 820 FALSE NA FALSE NA MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:61965006:- chr17:60019966-60142639:- chr17:60042367:- BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61808757:- chr17:59756500-59940920:- chr17:59886118:- chr17:61963579,chr17:61963584,chr17:61963589 chr17:61829912,chr17:61829914,chr17:61829914 NA NA chr17:60040940,chr17:60040945,chr17:60040950 chr17:59907273,chr17:59907275,chr17:59907275 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none MID_domain_of_medPIWI(69%)|DEAD_2(100%),Helicase_C-terminal_domain(100%) MID_MedPIWI(48%)|DEAD(15%),DEAD_2(100%),Helicase_C_2(100%) 2 2 2 78 71 ENST00000397786.7 ENST00000259008.7 upstream downstream none CACAGCTTCAACTTCATCTTCATCATCCTCCAACTTGAATAGTGGAGTATCATCAAATAAACTACCTTCGTTTCCACCCTTTGGCAGTATGAACAGTAATGCTGCAGGATCCATGTCTACACAAGCAAATACAGTTCAGAGTGGTCAGCTAGGAGGGCAACAGACATCAGCTCTACAGACAGCTGGGATTTCTGGAGAATCATCTTCACTTCCCACTCAGCCGCATCCTGATGTGTCTGAAAG|CCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAG TASTSSSSSSNLNSGVSSNKLPSFPPFGSMNSNAAGSMSTQANTVQSGQLGGQQTSALQTAGISGESSSLPTQPHPDVSEs|platvlgavvllnketvkshriplrriiqgnprypkyilghahtsrllrllessggrhi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 61992540 FALSE 61693512 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense 8233 TPGS2::FHOD3 ENSG00000134779.15::ENSG00000134775.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TPGS2 ENSG00000134779.15 protein_coding - - chr18:36777647-36829216:- chr18:36805374:- chr18:34357610-34409179:- chr18:34385337:- FHOD3 ENSG00000134775.16 protein_coding + - chr18:36297713-36780220:+ chr18:36760492:- chr18:33877676-34360183:+ chr18:34340455:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 1 2 137 2 ENST00000614939.4 unknown upstream downstream none GAACTTTTACCTGATGACCAATGGCTTCCACATGACATGGAGTGTGAAGCTGGATG___AGCACATCATTCCcCTGGGAAGCATGGaAATTAACAGaATCTCAA...GGACGATACACATGAAG|ACACATTCATTACGGCAGTCACTGAAGTTAACTAATGACAAAACATCTGTGCCTACAAGAAGATCTAATATGAGACAGAAAAGCCCCCGGCCCCAGAAGGACCACCACCCATTC...CAAAGGGTGGCTGTCAGGAGCAACTGGCATTGGCTCTGGGAAGGTCTAAAACCAAATGTGTTTCTTACACCAAAGCCCTGATATAAGAATTGAAATGAAAT DDTHE|dtfitavtevn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8239 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1437 TRUE 558 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61246918:+ chr14:61654277-62017694:+ chr14:61713636:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site intron duplication low none PAS_fold(100%)|C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),C2(100%),CDC50(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 1 340 1 ENST00000337138.9 unknown downstream upstream none GAACTTTTAGGCCGCTCAATTTATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAACTCATCATGATA___TGTTTACTAAAGGACAAGTCACCAC...TCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GCCCATGAGACCCTCT...CCATTGTTGGCCTGCCTGTCTCCCAATGGTTATTTGAGAAACAGCTCAGGGTAACAGCTCCAGGCTTCCATGCTGAGATGCTCTCTAGCCCTGACTCTTCT WVETQATVIYNTKNSQPQCIVCVNYVVr|pmrp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8240 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1437 TRUE 558 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61299711:+ chr14:61654277-62017694:+ chr14:61766429:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none PAS_fold(100%)|C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),C2(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 0 340 1 ENST00000337138.9 ENST00000554835.1 downstream upstream none CCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTTTTCAACTCTACTTTCATCTCCCATGAGACCTTTTTTTGAGACAAGCAAAGCCTCTCAGTTCAGCTTATATATTTTTGAATACACCCTCCCA PQCIVCVNYVVr|fstllsspmrpffetskasqfslyifeytl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8241 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1437 TRUE 558 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PAS_fold(100%)|Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 0 340 24 ENST00000337138.9 ENST00000332981.11 downstream upstream none GCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAATAACCCT LAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVr|wissqrgkylw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,TRUE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8242 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1437 TRUE 558 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61529075:+ chr14:61654277-62017694:+ chr14:61995793:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none PAS_fold(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(52%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|Kinase-like(3%),PK_Tyr_Ser-Thr(20%),Pkinase(20%),Pkinase_C(100%) 0 1 0 340 51 ENST00000337138.9 ENST00000555185.5 downstream upstream none GTGCATTGTATGTGTGAATTACGTTGTGAG|AGATCTGAAACTGGACAATGTCCTGTTGGACCACGAGGGTCACTGTAAACTGGCAGACTTCGGAATGTGCAAGGAGGGGATTTGCAATGGTGTCACCACGGCCACATTCTGTGGCACGCCAGACTATATCGCTCCAGA CIVCVNYVVr|DLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,TRUE|TRUE,TRUE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 TRUE|TRUE|FALSE|TRUE|FALSE,TRUE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8247 ENSG00000258964::PRKCH ENSG00000258964.1::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1438 TRUE 559 ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61734285:+ chr14:62200856-62242978:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61299711:+ chr14:61654277-62017694:+ chr14:61766429:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none |C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(100%),C2(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 0 340 1 ENST00000555937.1 ENST00000554835.1 downstream upstream none CCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTTTTCAACTCTACTTTCATCTCCCATGAGACCTTTTTTTGAGACAAGCAAAGCCTCTCAGTTCAGCTTATATATTTTTGAATACACCCTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8248 ENSG00000258964::PRKCH ENSG00000258964.1::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1438 TRUE 559 ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61734285:+ chr14:62200856-62242978:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 0 340 24 ENST00000555937.1 ENST00000332981.11 downstream upstream none GCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAATAACCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8249 ENSG00000258964::PRKCH ENSG00000258964.1::ENSG00000027075.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1438 TRUE 559 ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61734285:+ chr14:62200856-62242978:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61529075:+ chr14:61654277-62017694:+ chr14:61995793:+ chr14:61735190 chr14:61233319 NA NA chr14:62201908 chr14:61700037 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(52%) |Kinase-like(3%),PK_Tyr_Ser-Thr(20%),Pkinase(20%),Pkinase_C(100%) 0 1 0 340 51 ENST00000555937.1 ENST00000555185.5 downstream upstream none GTGCATTGTATGTGTGAATTACGTTGTGAG|AGATCTGAAACTGGACAATGTCCTGTTGGACCACGAGGGTCACTGTAAACTGGCAGACTTCGGAATGTGCAAGGAGGGGATTTGCAATGGTGTCACCACGGCCACATTCTGTGGCACGCCAGACTATATCGCTCCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8250 VAC14::FBXO31 ENSG00000103043.15::ENSG00000103264.18 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70731495:- chr16:70721342-70835063:- chr16:70765398:- FBXO31 ENSG00000103264.18 protein_coding - - chr16:87326987-87392142:- chr16:87360366:- chr16:87360593-87425748:- chr16:87393972:- chr16:70701034 chr16:87382842 NA NA chr16:70734937 chr16:87416448 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Vacuolar_14_Fab1-binding_region(100%),Vacuolar_protein_14_C-terminal_Fig4p_binding(7%)| HEAT(100%),Vac14_Fab1_bd(100%),Vac14_Fig4_bd(0%)|Cyclin_D1_bind(100%),F-box(53%),F-box-like(53%) 1 0 0 88 61 ENST00000261776.10 ENST00000311635.12 upstream downstream none ATTCTTACTTTTATAAGTTCATGATCAACCTTCTCAAGAGATTCAGCAGCGAACGGAAGCTCCTGGAGGTCAGAGGCCCTTTCATCATCAG|AGTATGGTGTTTGCGAAAACTTGCGGAAGCTGGAGATCACAGGCGTGTCTTG SYFYKFMINLLKRFSSERKLLEVRGPFIIr|vwclrklaeagdhrrv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8251 BCAS3::LINC00469 ENSG00000141376.24::ENSG00000177338.14 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60747279:+ chr17:58754814-59470199:+ chr17:58824640:+ LINC00469 ENSG00000177338.14 lncRNA - - chr17:73749270-73828520:- chr17:73761026:- chr17:71745409-71824659:- chr17:71757165:- chr17:60774065,chr17:61271623 chr17:73811128,chr17:73781293 NA NA chr17:58851426,chr17:59348984 chr17:71807267,chr17:71777432 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 1 0 0 59 22 ENST00000407086.8 ENST00000321800.11 downstream downstream none CGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCT___ATCAGTGGcGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATcCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTG|CAACAGCTCGGCAATCTGGAGGCAAGGTGGGAG PLLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQF|atarqsggkvg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8252 RSF1::CLNS1A ENSG00000048649.14::ENSG00000074201.9 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77678086:- chr11:77371054-77531915:- chr11:77389131:- CLNS1A ENSG00000074201.9 protein_coding - + chr11:77514936-77637794:- chr11:77571515:+ chr11:77225981-77348839:- chr11:77282560:+ chr11:77677167,chr11:77677169,chr11:77677169,chr11:77677174 chr11:77569798,chr11:77569798,chr11:77569796,chr11:77569796 NA NA chr11:77388212,chr11:77388214,chr11:77388214,chr11:77388219 chr11:77280843,chr11:77280843,chr11:77280841,chr11:77280841 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none PHD-finger(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%)| PHD(100%),WHIM1(100%)| 182 169 300 1145 684 ENST00000308488.11 unknown upstream upstream duplicates(67),homopolymer(1),low_entropy(6),mismatches(18) TGGTATCAGTATTGAAAACATCATTCCTCCACAA___GAGCCAGACTTTTCTGAAGATCAAGAAGAAAAGAAAAAAGATTCAAAAAAATCCAAAGCAAACTTGCTTGAAAGGAGGTCAACAAGAACAAGGAAATGTATAAGCTACAG___ATTTGATGAGTTTGATGAAGCAATTGATGAAGCTATTGAAGATGACATCAAAGAAGCCGATGGAGGAG|GGGGCTGGAGCCCTGGGCCAAGGGAGACCTGTGACCCCAGGTGCCGCCGGGAGAACTTCAGCCCAGAGGGGAAATCAGCTCTCCGTGACCCAGCACCCCTACCCAGCAGCGCAACAGATCCTGAGAGGAGCTACAGGATGATTCTAGAAACAGCGCACTTCAGGAATCATG___TTGCAGGTGTTGTGCATTGGATCCACCACAGTCGGCTGAAACTGACAACTCAAGACAAGTGGACCAGCCAGCAGGAC GISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEADGG|ggwspgpretcdprcrrenfspegksalrdpaplpssatdpersyrmiletahfrnhvagvvhwihhsrlklttqdkwtsqq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8256 ERLIN2::TMEM68 ENSG00000147475.17::ENSG00000167904.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1439 FALSE NA ERLIN2 ENSG00000147475.17 protein_coding + + chr8:37736601-37758422:+ chr8:37738029:+ chr8:37594119-37615940:+ chr8:37595547:+ TMEM68 ENSG00000167904.16 protein_coding - - chr8:55696424-55773407:- chr8:55745121:- chr8:56608983-56685966:- chr8:56657680:- chr8:37740497,chr8:37740495,chr8:37740496 chr8:55750421,chr8:55750423,chr8:55750421 NA NA chr8:37598015,chr8:37598013,chr8:37598014 chr8:56662980,chr8:56662982,chr8:56662980 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none SPFH_domain_/_Band_7_family(6%)|Acyltransferase(4%) Band_7(0%)|Acyltransferase(0%) 2 2 188 748 403 ENST00000518526.5 ENST00000434581.7 downstream downstream duplicates(20),mismatches(7) CGGTTTTCTTGCTCGTGGGCTCGGACGAGTACGGAGCGCCTGCAGGGACAGCCTG___GATAAAGGCTCACTGATGGCTCAGTTGGGAGCAGTTGTGGCTGTGGCTTCCAGTTTCTTTTGTGCATCTCTCTTCTCAGCTGTGCACAAGATAGAAGAGGGACATATTGGGGTATATTACAG|CCCATTATTCCTATGTTTACACAAAATATTCGAGAAGGATTTAGATCACTTGGAGGAACAA___GGTTATTTAGGTGGCTTTATGAAAAATTCCGCTATCCATTTGCTCCAATGTATGGAGGTTTTCCAGTGAAGTTACGGACCTATTTAGGCGACCCCA MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYs|plflclhkifekdldhleeqgylggfmknsaihllqcmevfq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8257 CHD2::FAM174B ENSG00000173575.24::ENSG00000185442.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92929091:+ chr15:93429433-93571226:+ chr15:93472321:+ FAM174B ENSG00000185442.13 protein_coding - + chr15:92617448-92809884:- chr15:92693788:+ chr15:93160678-93353114:- chr15:93237018:+ chr15:92930080,chr15:92930022,chr15:92930076 chr15:92689454,chr15:92689454,chr15:92689447 NA NA chr15:93473310,chr15:93473252,chr15:93473306 chr15:93232684,chr15:93232684,chr15:93232677 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 40 81 126 1228 169 ENST00000394196.9 unknown downstream upstream duplicates(16),low_entropy(1),mismappers(3),mismatches(6) GGAAGAATATCCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG___GCAAGTAGCGGGTCTGAGAGTGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCTGAAAAAACA|TTTATCAATAAAGCATGGTGCAACTTTGTCACCACTGGGAAAACATGGAAGCAGAGAAAGGAAAATCTCCATGGAGATATTTCTGTCCTTGGCACATCCCCTGAAAGGCAAACACCAGCTGTCAAACTGGGCTGTCTTCAAGAGACTCCAGCCCCTCAGTGCCCATCCATG___...GGTATGGAAGAACACCACTTTCCAACAATCTGTCACCGAAATCGAGTCTTCCTAAAACTCAGGTGGAAGCAACTGATAAGGC EEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKh|lsikhgatlsplgkhgsrerkismeiflslahplkgkhqlsnwavfkrlqplsahp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8259 DDX23::ENSG00000257634 ENSG00000174243.11::ENSG00000257634.1 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1440 FALSE NA DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48836121:- chr12:49223539-49246625:- chr12:49229904:- ENSG00000257634 ENSG00000257634.1 lncRNA + + chr12:54682973-54687434:+ chr12:54685069:+ chr12:55076757-55081218:+ chr12:55078853:+ chr12:48834323,chr12:48834340 chr12:54683512,chr12:54683493 NA NA chr12:49228106,chr12:49228123 chr12:55077296,chr12:55077277 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none DEAD/DEAH_box_helicase(23%)| DEAD(3%)| 1 3 9 1339 495 ENST00000308025.8 ENST00000552524.1 upstream upstream none CCGCAAACTTCGTAAGAAGGAAGCCAAGCAGCGCTGGGATGATCGTCATTGGTCTCAGAAAAAGTTAGATGAGATGACGGACAGGGACTGGCGGATCTTCC...CTCTGCCCCCACACATCTTGGAGGTCATTGATAAGTGTGGCTACAAG___GAACCAACACCTATACAGCGTCAGGCAATTCCCATTGGGCTACAGAATCGTGACATCATTGGTGTGGCTGAGACTGGCAGTGGCAAGACAGCAGCCTTCCTCATCCCTCTGCTGGTCTGGATCACCACACTTCCCAAAATTGACAG|GGCTAGCTTTGGGAGAAGTGTCCCAAGCAGCAGGAATGTGAACAGGTGAGGCTTCCAGCCCACAGGAGCCTGCAGAGAGTGTGCGAGACTGAATTGGAAGGATGCCCACAGTGTGGTTTTCTGTGCCTCTGTTGCCTTCTCAAGTCTCCTGAGTGACATTCTGGGCTTAGGGCTTGGAGCCATGTGGGTCATCTATCCAGGAGAGGTAGGCACTCGGGTGACTTGAAAAAGAATCTTCCCTTGCAAGGTCCATGTCCCTGCAACCACTGCCCCCTCACCTTCCCCAGCCCACTTTTTCTA...GGAAAGGTGGATCAATGGATTTGGGGACAGATGAAGGATAGAGGGAGAATGGGAGCTGAAGGACGATTCTTTTGGCAAGGTAGCCTGAGCCTTGTGTGGGC LPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDr|asfgrsvpssrnvnr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8260 MAPKAP1::PBX3 ENSG00000119487.17::ENSG00000167081.18 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAPKAP1 ENSG00000119487.17 protein_coding - - chr9:125437393-125707234:- chr9:125657651:- chr9:128199672-128469513:- chr9:128419930:- PBX3 ENSG00000167081.18 protein_coding + - chr9:125747345-125967377:+ chr9:125902434:- chr9:128509624-128729656:+ chr9:128664713:- chr9:125634324,chr9:125634329 chr9:125903949,chr9:125903951 NA NA chr9:128396603,chr9:128396608 chr9:128666228,chr9:128666230 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none SAPK-interacting_protein_1_(Sin1)__middle_CRIM_domain(21%),Stress-activated_map_kinase_interacting_protein_1_(SIN1)(100%)| CRIM(0%),SIN1(100%)| 50 38 94 959 82 ENST00000373511.6 unknown upstream downstream duplicates(11),mismappers(1),mismatches(7) GTCGATATTACCTCAAGTTGGGACTTTGGTATTAGAAGACGCTCAAACACAG___CTCAAAGATTAGAACGACTCCGAAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAGCAATCAG___CCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCTCTCAAAGAGAAGCCTCCAATTTCTGGGAAGCAGTCGATATTATCTGTACGCCTAGAACAGTGCCCTCTGCAGCTGAATAACCCTTTTAACGAGTATTCCAAATTTGATGGCAAG|GTCAAATCTGGATACTCTCTGCTGAAGACAACCAATATTAATGAATCACACTACAGAGTCATTGTCTACGATCCCAAAGGAAACAATAATGCGAGTACAACAAATTCTTCTTGCAAGAGAAAATCCTGCAAAACTACTTAACAGAATAACACTGGTCAATGCTCTAATCATACATTTGTTAAACCTTATATAATGTTTTCAAATATGCATGCAATCCAGGTGCAGCTTTAACTAAAAATTCAGTCTAATTTTATTTTCAGTTTAGG VDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGK|vksgysllkttnineshyrvivydpkgnnnasttnssckrkscktt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8261 CHD2::CHASERR ENSG00000173575.24::ENSG00000272888.8 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1441 TRUE 560 CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92929091:+ chr15:93429433-93571226:+ chr15:93472321:+ CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92872237:+ chr15:93362770-93442931:+ chr15:93415467:+ chr15:92932161,chr15:92932154,chr15:92932116 chr15:92861560,chr15:92861137,chr15:92861512 NA NA chr15:93475391,chr15:93475384,chr15:93475346 chr15:93404790,chr15:93404367,chr15:93404742 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none none none 30 62 78 1228 177 ENST00000394196.9 unknown downstream upstream duplicates(24),low_entropy(1),mismappers(67),mismatches(11) ATCCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG___GCAAGTAGCGGGTCTGAGAGTGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCTGAAAAAACA|GGTCTCACTCTGTCGCCCAGGCTGGAGTCGACTGGCTCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGATTCTCCTGCCTCAGCCTCCTGAGAAGCTCTGACTACAGGTGCCCACCACCACGCCCGGCTAGTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGCGGTCCACCCGCCTAGGCCTCCCAAACTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCATCA...___ATGGAGTCTCGCTCTGTT PDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKq|vslcrpgwsrlarsrltatsaswillpqppekl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8262 CHD2::CHASERR ENSG00000173575.24::ENSG00000272888.8 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1441 TRUE 560 CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92901299:+ chr15:93429433-93571226:+ chr15:93444529:+ CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92897724:+ chr15:93362770-93442931:+ chr15:93440954:+ chr15:92932161,chr15:92932154,chr15:92932116 chr15:92861560,chr15:92861137,chr15:92861512 NA NA chr15:93475391,chr15:93475384,chr15:93475346 chr15:93404790,chr15:93404367,chr15:93404742 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 1 0 0 1271 1049 ENST00000394196.9 ENST00000653163.1 downstream upstream none ATTAATTATTGCTTTATTTTTTTGACCAGTTAACATATTTGAGGGTTATTTTATTTATTTTTCGTTTTTT[t]AACGGAGGATTTTGCCTTTATTTTTAATTA...TTTAAGAATTAAAAGATGATGAGAAATAAGGACAAAAGCCAAGAGGAGGACAGTTCGCTACACAGCAATGCATCGAG|CACCCAGTCAGCTTGAAGAGTTTC MMRNKDKSQEEDSSLHSNASs|tqsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8263 RPS6KB2::KDM2A ENSG00000175634.15::ENSG00000173120.15 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1442 TRUE 561 RPS6KB2 ENSG00000175634.15 protein_coding + + chr11:67428460-67435401:+ chr11:67433042:+ chr11:67195931-67202872:+ chr11:67200513:+ KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67149055:+ chr11:66886734-67025553:+ chr11:66916526:+ chr11:67433209,chr11:67433203 chr11:67145581,chr11:67145572 NA NA chr11:67200680,chr11:67200674 chr11:66913052,chr11:66913043 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Protein_kinase_domain(64%)|CXXC_zinc_finger_domain(100%),F-box_domain(100%),Jumonji_helical_domain(100%),PHD-finger(100%) PK_Tyr_Ser-Thr(79%),Pkinase(76%)|F-box(100%),F-box-like(100%),JHD(100%),PHD_4(100%),zf-CXXC(100%) 57 21 73 666 68 ENST00000312629.10 ENST00000532436.5 downstream upstream duplicates(22),mismatches(10) GGAACTGGCCTATGCCTTCCAGACTGGTGGCAAACTCTACCTCATCCTTGAGTGCCTCAGTG___GTGGCGAGCTCTTCACGCATCTGGAGCGAGAGGGCATCTTCCTGGAAGATACGGCCTG___CTTCTACCTGGCTGAGATCACGCTGGCCCTGGGCCATCTCCACTCCCAGGGCATCATCTACCGGGACCTCAAGCCCGAGAACATCATGCTCAGCAGCCAGG___GCCACATCAAACTGACCGACTTTGGACTCTGCAAGGAGTCTATCCATGAGGGCGCCGTCACTCACACCTTCTGCGGCACCATTGAGTACAT|ATGGTGGCAGATGAAAAAGCAGATTTTTTTCCCCTGAAGCTCTTTAATAATGGCAAAAGTTAAAAAGTGTTTTCTCTGTAGTCCTGAATTTACTGAATGTATTCCCTTCCTGAATAAATTGACTGTTCCCTTAGTGTAGGGCTATAACCTGGTTTTGGTGGAGTCCCTTCCAGGTTCTAACATTTGTGTGACCTTGAACAGGGTACTTCTTAACCTTTCTGAGTCTCAGGTTTATTCATTTCTAAAGTGC ELAYAFQTGGKLYLILECLSGGELFTHLEREGIFLEDTACFYLAEITLALGHLHSQGIIYRDLKPENIMLSSQGHIKLTDFGLCKESIHEGAVTHTFCGTIEYi|wwqmkkqiffp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-2 AGC RSK RSKp70 Q9UBS0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8264 RPS6KB2::KDM2A ENSG00000175634.15::ENSG00000173120.15 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1442 TRUE 561 RPS6KB2 ENSG00000175634.15 protein_coding + + chr11:67428460-67435401:+ chr11:67433042:+ chr11:67195931-67202872:+ chr11:67200513:+ KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67180079:+ chr11:66886734-67025553:+ chr11:66947550:+ chr11:67433209,chr11:67433203 chr11:67145581,chr11:67145572 NA NA chr11:67200680,chr11:67200674 chr11:66913052,chr11:66913043 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(64%)|CXXC_zinc_finger_domain(100%),F-box_domain(100%),Jumonji_helical_domain(100%),PHD-finger(100%) PK_Tyr_Ser-Thr(79%),Pkinase(76%)|F-box(100%),F-box-like(100%),JHD(100%),PHD_4(100%),zf-CXXC(100%) 0 1 3 666 135 ENST00000312629.10 ENST00000529006.7 downstream upstream duplicates(1),mismatches(2) ATCATCTACaGGGACCTCAAGCCCGAGAAaATCATGCTCAGCAGCCAGG___GCCACATCAAACTGACCGACTTTGGACTCTGCAAGGAGTCTATCCATGAGGGCGCCGTCACTCACACCTTCTGCGGCACCATTGAGTACAT|CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCC...ACTTTTATGGAAGGAAAAG___ATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAA___AATGCCG IIYRDLKPEkIMLSSQGHIKLTDFGLCKESIHEGAVTHTFCGTIEYi|vvpcddamkmmafqmmklkekelltwkrnctptnim NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-2 AGC RSK RSKp70 Q9UBS0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8265 RPS6KB2::KDM2A ENSG00000175634.15::ENSG00000173120.15 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1442 TRUE 561 RPS6KB2 ENSG00000175634.15 protein_coding + + chr11:67428460-67435401:+ chr11:67429595:+ chr11:67195931-67202872:+ chr11:67197066:+ KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67180079:+ chr11:66886734-67025553:+ chr11:66947550:+ chr11:67433209,chr11:67433203 chr11:67145581,chr11:67145572 NA NA chr11:67200680,chr11:67200674 chr11:66913052,chr11:66913043 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Protein_kinase_domain(14%)|CXXC_zinc_finger_domain(100%),F-box_domain(100%),Jumonji_helical_domain(100%),PHD-finger(100%) PK_Tyr_Ser-Thr(8%),Pkinase(7%)|F-box(100%),F-box-like(100%),JHD(100%),PHD_4(100%),zf-CXXC(100%) 2 0 2 822 135 ENST00000312629.10 ENST00000529006.7 downstream upstream duplicates(1),mismatches(1) CTGGCCTAGA___GCCTGTGGGACACTATGAAGAGGTGGAGCTGACTGAGACCAGCGTGAACGTTGGCCCAGAGCGCATCGGGCCCCACTGCTTTGAGCTGCTGCGTGTGCTGGGCAAGGGGGGCTATGGCAAG___GTGTTCCAGGTGCGAAAGGTGCAAGGCACCAACTTGGGCAAAATATATGCCATGAAAGTCCTAAGGAAG|CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCC...ACTTTTATGGAAGGAAAAG___ATTTTAATGTAGAGTATATTCAGCGGGGTGGCTTGAGAGATCCTCTGATTTTCAAGAATTCTGATGGACTCGGAATAAA___AAT GLEPVGHYEEVELTETSVNVGPERIGPHCFELLRVLGKGGYGKVFQVRKVQGTNLGKIYAMKVLRK|RGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-2 AGC RSK RSKp70 Q9UBS0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8267 PRCP::INTS4 ENSG00000137509.12::ENSG00000149262.19 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 823 FALSE NA FALSE NA PRCP ENSG00000137509.12 protein_coding - - chr11:82822936-82970584:- chr11:82859977:- chr11:82533978-82681626:- chr11:82571019:- INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77961138:- chr11:77585464-77705761:- chr11:77672184:- chr11:82858835,chr11:82858839 chr11:77975435,chr11:77975436 NA NA chr11:82569877,chr11:82569881 chr11:77686481,chr11:77686482 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Serine_carboxypeptidase_S28(11%)|HEAT_repeat_associated_with_sister_chromatid_cohesion(100%),HEAT_repeats(100%) Peptidase_S28(53%),Peptidase_S37(80%),Rep_fac-A_C(100%)|Cohesin_HEAT(100%),HEAT_2(26%) 23 44 49 785 1663 ENST00000313010.8 ENST00000695303.1 upstream downstream duplicates(9),mismatches(5),multimappers(2) CCTGAGCCATGGGCCGCCGAGCCCTCCTGCTCCTGCTTCTGTCTTTTCTGGCGCCCTGGGCCACCATAGCCCTCCGGCCGGCCTTAAGGGCCCTCGGCAGCCTACACTTGCCAACCAACCCCACATCCCTCCCGGCTGTAGCCAAGAACTATTCGGTTCTCTACTTCCAACAGAAG___GTTGATCATTTTGGATTTAATACTGTGAAAACTTTTAATCAGCGGTACCTAGTAGCTGATAAATACTGGAAGAAAAATGGTGGATCAATACTTTTCTACACTGGTAATGAAGGGGACATTATCTGGTTTTGTAATAACACG|CATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATG___TTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAG___GCCTGTAAATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAG___CATTGTCCCAATTCCTTCTTCTAATGAAGA MGRRALLLLLLSFLAPWATIALRPALRALGSLHLPTNPTSLPAVAKNYSVLYFQQKVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNT|HLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8268 PAK1::TENM4 ENSG00000149269.10::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAK1 ENSG00000149269.10 protein_coding - - chr11:77322017-77474635:- chr11:77473552:- chr11:77033062-77185680:- chr11:77184597:- TENM4 ENSG00000149256.16 protein_coding - + chr11:78652829-79441030:- chr11:79250007:+ chr11:78363874-79152074:- chr11:78961052:+ chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743,chr11:77398743 chr11:79160609,chr11:79160601,chr11:79160594,chr11:79160587,chr11:79160581,chr11:79160577,chr11:79160575,chr11:79160619,chr11:79160616,chr11:79160613 NA NA chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788,chr11:77109788 chr11:78871654,chr11:78871646,chr11:78871639,chr11:78871632,chr11:78871626,chr11:78871622,chr11:78871620,chr11:78871664,chr11:78871661,chr11:78871658 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 0 52 18 241 179 ENST00000356341.8 unknown upstream upstream duplicates(5),low_entropy(1),mismappers(20),mismatches(1) CTGAGGGGAGCCCCGCCACGGGCAGCGCGGCGGCGGCGGCAGGAGGGAGAAAGTGAAGCGGTAGCTCGCGCACACTCGCGCCCTCACTCCCGGCTAGGCGGCACCCACCGCCGGGAGGAGGAGGAGGAGCCGAGAGGAGCTGAGCGAGCGCGGAAG|ATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCAGCTCACTTCAACCTCTGTCTCCCCTGTTCAAGCAACTCTCCTGCCTCAGCCTCTTGAGTAGCTGGGATTACAG___...TACTTCCTACTACAGGTGGAGTGCATTTCCCTACCCACTAGGGAGCTTGACCTCTCCCTTCTGCTGCCATGAAAAGAATGTGCCCCAGCTCTCCTGTGGGTCCAAGGAGGATGAGAGACTCATGGAGCAG...___GAGGAGGAGCGCTATGTGTTTGGAGATGAAACCATTTAAAAAGCACAGATCTTGACAAAACAAAGCCAGTGGCTTCTTCCTCTGCAGCCTCTCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 1 STE STE20 PAKA Q13153 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8281 UGGT2::MED4 ENSG00000102595.22::ENSG00000136146.15 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UGGT2 ENSG00000102595.22 protein_coding - - chr13:95801580-96053482:- chr13:95894562:- chr13:96453834-96705736:- chr13:96546816:- MED4 ENSG00000136146.15 protein_coding - + chr13:48053323-48095131:- chr13:48069240:+ chr13:48627459-48669267:- chr13:48643376:+ chr13:95892994,chr13:95892998 chr13:48064393,chr13:48064389 NA NA chr13:96545248,chr13:96545252 chr13:48638529,chr13:48638525 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Thioredoxin-like_domain(100%)| Thioredoxin_12(100%),Thioredoxin_13(100%),Thioredoxin_14(100%),Thioredoxin_15(100%)| 4 4 14 68 43 ENST00000376747.8 unknown upstream upstream duplicates(3),mismatches(3) TTCTTAGGACCTTTAGATGAAGATTTTTATGCAGAAGATTTTTACTTGTTGGAAAAGATAACATTTAGTAATTTAGGAGAGAAAATTAAAGGCATTGTTGAAAATATGGGAATCAACGCAAATAA___CATGAGTGACTTTATTATGAAAGTTGATGCCCTTATGTCCTCTGTGCCTAAGCGTGCATCTCGATATGATGTCACATTTCTTAGGGAGAATCACAG|GCTCCCCAAAATAATCAAACTTCAGTTTCAAAATAGTCTTTCCTGATGCTTGGATTTTGGATGTGAAAAGGGCCCCCGGAGTATCCAAAAGAGAG___GTGCTCTCAAgTACAGGTTTCTAATAACTTTGGAGATTGTGACACTGGGATAAAGGAAAAATG...CTAGTAGAAAACTGAAGTAATCTTTTTGACTTTTGCTTGGAATATTGCTGGTCCTTGTTTTTTTTTGTTTGTTTTTCAGAGTCAAGGAAACTTATTTTGAGCTATTTATAGCCTTTAATAATTGAGTAAGGTATACTCCTGTGAACAAAATTTGGAGCATATTTGTCTCTCTCTCTCTGCCTGGCTTCTCCAGAATTTGGGAACTACTT___GAGGTTCCAACAAAAAGTCACTACTATGATTTGGTGGTAACATATTCATCGACATGTCATTTGACTGCCATGGATACTGTGGAGCAAG FLGPLDEDFYAEDFYLLEKITFSNLGEKIKGIVENMGINANNMSDFIMKVDALMSSVPKRASRYDVTFLRENHr|lpkiiklqfqnsls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8283 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 825 TRUE 1445 TRUE 562 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099,chr5:32106102 chr5:32167671,chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205,chr5:32106208 chr5:32167777,chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 7 7 8 21 996 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(4),mismatches(1) GTTGTTAGAAGGACTGAATGAGATGAAGTAGAGGAAAGTCTTCTAGGACAGGGGTCCTCAACCCTTGGGCCACAGACTGGTGGCAGGAGGGCTGCACAGCAG___...TGAGCTCTGCCTCCTGTCAGATCAGCAGCAGCATTAGATTCTCAC...GCGAGGGATCTAGGTTGCATGTTC...CCCCAGATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAAGCTCTGAAGCATGTTAAGGAAACTCAGCCTCCAGAAACGGTCCAGAACTGGATTGAATTACTTAGTG___GTGAGACATGGAATCCATTAAAATTGCATTATCAGTTAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 8284 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1445 TRUE 562 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106401:- chr5:32103551-32122047:- chr5:32106507:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099,chr5:32106102 chr5:32167671,chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205,chr5:32106208 chr5:32167777,chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 0 1 4 16 996 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(1) GTTAGAAGGACTGAATGAGATGAAGTAGAGGAAAGTCTTCTAGGACAGGGGTCCTCAACCCTTGGGCCACAGACTGGTGGCAGGAGGGCTGCACAGCAG|GGTTACACATCATTTTGGAATGACTGTATAT...ACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAAGCTCTGAAGCATGTTAAGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 8285 GPR107::LAMA2 ENSG00000148358.21::ENSG00000196569.14 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1446 TRUE 563 GPR107 ENSG00000148358.21 protein_coding + + chr9:130053426-130140169:+ chr9:130107537:+ chr9:132815705-132902448:+ chr9:132869816:+ LAMA2 ENSG00000196569.14 protein_coding + + chr6:128883138-129516566:+ chr6:129049916:+ chr6:129204283-129837711:+ chr6:129371061:+ chr9:130112125,chr9:130112114 chr6:128975114,chr6:128975100 NA NA chr9:132874404,chr9:132874393 chr6:129296259,chr6:129296245 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Lung_seven_transmembrane_receptor(75%)|Laminin_B_(Domain_IV)(100%),Laminin_Domain_I(100%),Laminin_Domain_II(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%),Laminin_N-terminal_(Domain_VI)(100%) GpcrRhopsn4(100%),Lung_7-TM_R(43%)|Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),Laminin_I(100%),Laminin_II(100%),Laminin_N(100%) 3 6 12 258 23 ENST00000372406.5 ENST00000689044.1 downstream upstream duplicates(2),mismatches(4) GGGCACGACTGAATATGGCTTGTGGAAGGACTCTgTATTTCTGGTCGACCTGTTGTGTTGTGGTGCCATCCTCTTCCCAGTGGTGTG___GTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAA|AGGTTTATTCCCTGCTGTCCTGAATCTTGCTTCTAATGCTCTTATCACGACCAATGCAACATGTGGAGAAAAAGGACCTGAAATGTACTGCAAATTGGTAGAACATGTCCCTGGGCAGCCTGTGAGGAACCCGCAGTGTCGAATCTGCAATCAAAACAGCAGCAATCCAAACC___AGAGACACCCGATTACAAATGCTATTGATGGAAAGAACACTTGGTGGCAGAGTCCCAGTATTAAGAATGGAATCGAA GTTEYGLWKDSvFLVDLLCCGAILFPVVWSIRHLQEASATDGk|glfpavlnlasnalittnatcgekgpemycklvehvpgqpvrnpqcricnqnssnpnqrhpitnaidgkntwwqspsikngi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8286 GPR107::LAMA2 ENSG00000148358.21::ENSG00000196569.14 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1446 TRUE 563 GPR107 ENSG00000148358.21 protein_coding + + chr9:130053426-130140169:+ chr9:130110426:+ chr9:132815705-132902448:+ chr9:132872705:+ LAMA2 ENSG00000196569.14 protein_coding + + chr6:128883138-129516566:+ chr6:129049918:+ chr6:129204283-129837711:+ chr6:129371063:+ chr9:130112125,chr9:130112114 chr6:128975114,chr6:128975100 NA NA chr9:132874404,chr9:132874393 chr6:129296259,chr6:129296245 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Lung_seven_transmembrane_receptor(75%)|Laminin_B_(Domain_IV)(100%),Laminin_Domain_I(100%),Laminin_Domain_II(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%),Laminin_N-terminal_(Domain_VI)(100%) GpcrRhopsn4(100%),Lung_7-TM_R(51%)|Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),Laminin_I(100%),Laminin_II(100%),Laminin_N(100%) 0 1 12 60 23 ENST00000372406.5 ENST00000421865.3 downstream upstream duplicates(1),mismatches(4) CAGCATGGGACCTCTTCAGCAGAGAGCGAATCTgAGAGCAGGcAGTCGCATAG|GTTTAgTCCCTGCTGTCCTGAATCTTGCTTCTAATGCTCTTATCACGACCAATGCAACATGTGGAGAAAAAGGACCTGAAATGTACTGCAAATTGGTAGAACATGTCCCTGGGCAGCCTGTGAGGAACCCGCAGTGTCGAATCTGCAATCAAAACAGCAGCAATCCAAACC___AGAGACACCCGATTACAAATGCTATTGATGGAAAGAACACTTGGTGGCAGAGTCCCAGTATTAAGAATGGAATCGAA SMGPLQQRANLRAGSRI|gLvPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVRNPQCRICNQNSSNPNQRHPITNAIDGKNTWWQSPSIKNGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8287 RSF1::GAB2 ENSG00000048649.14::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE TRUE 826 TRUE 1447 TRUE 564 RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77700721:- chr11:77371054-77531915:- chr11:77411766:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WSTF__HB1__Itc1p__MBD9_motif_1(100%)|PH_domain(82%) WHIM1(100%)|PH(0%) 4 6 10 1829 440 ENST00000308488.11 ENST00000361507.5 upstream downstream duplicates(3) AAGAGAAGACAGAAAAGGAAGAGGAGAAAACAAATGTGGGTCGTACTTTAAGAAGATCTCCAAGAATATCTAGACCCACTGCAAAAGTGGCTGAGATCAGAGATCAGAAAGCTGATAAAAAAAGAGGGGAAGGAGAAGATGAGGTGGAAGAAGAGTCAACAGCTTTGCAAAAAACTGACAAAAAGGAAATTTTGAAAAAATCAGAGAAAGATACAAATTCTAAAGTAAGCAAG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTGG EKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSK|AWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8288 RSF1::GAB2 ENSG00000048649.14::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1447 TRUE 564 RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77700730:- chr11:77371054-77531915:- chr11:77411775:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none WSTF__HB1__Itc1p__MBD9_motif_1(100%)|PH_domain(82%) WHIM1(100%)|PH(0%) 1 1 10 1829 440 ENST00000532556.1 ENST00000361507.5 upstream downstream duplicates(1) CAAAGTTCTAGAACCAGAAAACAAGCAAGAGAAGACAGAAAAGGAAGAGGAGAAAACAAATGTGGGTCGTACTTTAAGAAGATCTCCAAGAATATCTAGACCCACTGCAAAAGTGGCTGAGATCAGAGATCAGAAAGCTGATAAAAAAAGAGGGGAAGGAGAAGATGAGGTGGAAGAAGAGTCAACAGCTTTGCAAAAAACTGACAAAAAGGAAATTTTGAAAAAATCAGAGAAAGATACAAATTCTAAA|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8290 RSF1::GAB2 ENSG00000048649.14::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1447 TRUE 564 RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77740731:- chr11:77371054-77531915:- chr11:77451776:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none WSTF__HB1__Itc1p__MBD9_motif_1(100%)|PH_domain(82%) WHIM1(100%)|PH(0%) 0 1 1 1927 440 ENST00000308488.11 ENST00000361507.5 upstream downstream none CACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGT...AGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGcCCAGTGAACGCACCTTTTACCTGGTGGCcGAG HNVRMYIEEQDDQDGSSWKCIVr|pgrnaglscg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8292 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 827 TRUE 1448 TRUE 565 CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77629763:- chr11:77225981-77348839:- chr11:77340808:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78712714:- chr11:78363874-79152074:- chr11:78423759:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(36%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%) Voldacs(52%)|RHS_repeat(100%),Tox-GHH(100%) 8 5 17 11337 29 ENST00000525428.6 ENST00000278550.12 upstream downstream duplicates(2) CTCAGGGCCTGTGTTGCCGCACTCTGCTGCTATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGAGGGGCTCCTGCGGCAGCAGCCAGACACTGAGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAG___CCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGAAGTGACTGTCTAGGAGAGCATTTGTATGTTATGGTGAATGCCAAATTTGAAG|TCACAGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCCGGCGGGTCTTTAAAATCAAGTCCACTGTGGTGGTGAAGGACCTTGTCAAGAACTCTGAGGTGGTTGCGGGGACAGGTGACCAGTGCCTCCCCTTTGATGACACTCGCTGCGGGGATGGTGGGAAGGCCACAGAAGCCACACTCACCAATCCCAGGG___GCATTACAGTGGACAAGTTTGGGCTGATCTACTTCGTGGATGGC MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHALSRDRSDCLGEHLYVMVNAKFE|vtvqhtnttwpqtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8293 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1448 TRUE 565 CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77629763:- chr11:77225981-77348839:- chr11:77340808:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78720390:- chr11:78363874-79152074:- chr11:78431435:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(36%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%) Voldacs(52%)|RHS_repeat(100%),Tox-GHH(100%) 0 1 18 11337 3 ENST00000525428.6 ENST00000278550.12 upstream downstream duplicates(2) CTGGTACCCTTTACATCGCTGAGAG___CCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGAAGTGACTGTCTAGGAGAGCATTTGTATGTTATGGTGAATGCCAAATTTGAAG|AAATAAAGATTTCAGACATAG___TCACAGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCaGGCGG GTLYIAESRLSWLDGSGLGFSLEYPTISLHALSRDRSDCLGEHLYVMVNAKFE|eikisdivtvqhtnttwpqtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8294 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1448 TRUE 565 CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77637590:- chr11:77225981-77348839:- chr11:77348635:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78712714:- chr11:78363874-79152074:- chr11:78423759:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(5%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%) Voldacs(0%)|RHS_repeat(100%),Tox-GHH(100%) 2 1 9 7954 29 ENST00000525428.6 ENST00000278550.12 upstream downstream none TGCACGCATTGCTGTGCTCCAACTCCCTCAGGGCCTGTGTTGCCGCACTCTGCTGCTATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGAGGGGCTCCTGCGGCAGCAGCCAGACACTGAGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAG|TCACAGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCCGGCGGGTCTTTAAAATCAAGTCCACTGTGGTGGTGAAGGACCTTGTCAAGAACTCTGAGGTGGTTG MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAEs|HSPAHKYYLATDPMSGAVFLSDSNSRRVFKIKSTVVVKDLVKNSEVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8295 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1448 TRUE 565 CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77629763:- chr11:77225981-77348839:- chr11:77340808:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78708515:- chr11:78363874-79152074:- chr11:78419560:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(36%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%) Voldacs(52%)|RHS_repeat(100%),Tox-GHH(100%) 1 0 9 11337 40 ENST00000525428.6 ENST00000278550.12 upstream downstream mismatches(1) GTTGCCGCACTCTGCTGCTATGtGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGcGGGGCTCCTGCGGCAGCcGCaAGcCACTcAGGCTGTG...CTGGTACCCTTTACATCGCTGAGAG___CCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTTTACATGCATTATCCAGGGACCGAAGTGACTGTCTAGGAGAGCATTTGTATGTTATGGTGAATGCCAAATTTGAAG|GCATTACAGTGGACAAGTTTGGGCTGATCTACTTCGTGGATGGCACCATGATCAGACGCATCGATCAGAATGGGATCATCTCCACCCTGCTCGGCTCTAATGATCTCACATCAGCCCGGCCACTCAGCTGTGATTCTGTCATGGATATTTCCCAG___GTTCACCTGGAGTGGCCCACAGACTTAGCCATCAACCCAATGGACAACTCACTTTATGTCCTCGACAACAATGTGGTCCTGCAAATCTCTGAAAA GTLYIAESRLSWLDGSGLGFSLEYPTISLHALSRDRSDCLGEHLYVMVNAKFE|gITVDKFGLIYFVDGTMIRRIDQNGIISTLLGSNDLTSARPLSCDSVMDISQVHLEWPTDLAINPMDNSLYVLDNNVVLQISE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8296 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1448 TRUE 565 CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77637590:- chr11:77225981-77348839:- chr11:77348635:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78708515:- chr11:78363874-79152074:- chr11:78419560:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(5%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%) Voldacs(0%)|RHS_repeat(100%),Tox-GHH(100%) 2 1 6 7954 40 ENST00000525428.6 ENST00000278550.12 upstream downstream none GGGCGGTGTGGTGCACGCATTGCTGTGCTCCAACTCCCTCAGGGCCTGTGTTGCCGCACTCTGCTGCTATGAGCTTCCTCAAAAGTTTCCCGCCGCCTGGGCCAGCGGAGGGGCTCCTGCGGCAGCAGCCAGACACTGAGGCTGTGCTGAACGGGAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAG|GCATTACAGTGGACAAGTTTGGGCTGATCTACTTCGTGGATGGCACCATGATCAGACGCATCGATCAGAATGGGATCATCTCCACCCTGCTCGGCTCTAATGATCTCACATCAGCCCGGCCACTCAGCTGTGATTCTGTCATGGATATTTCCCAG___GTTCACCTGGAGTGGCCCACAGACTT MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAEr|hysgqvwadllrgwhhdqthrsewdhlhparl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8297 TENM4::ACER3 ENSG00000149256.16::ENSG00000078124.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE TRUE 828 FALSE NA FALSE NA TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79215808:- chr11:78363874-79152074:- chr11:78926853:- ACER3 ENSG00000078124.13 protein_coding + + chr11:76860859-77026797:+ chr11:76868120:+ chr11:76571903-76737841:+ chr11:76579164:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Ceramidase(89%) |Ceramidase(96%) 5 3 9 76 101 ENST00000278550.12 ENST00000681375.1 upstream upstream duplicates(2),mismatches(1) TAGTGATCTCTCAGACACTTGGTCGGTAG___AAAAGATCCCGCACtATCCTCCAGGATCCAATGGCCTTGGAGAGAGGGCTGCAGGGCCCACGGACATTGCTGACTCTTCAGAACGTGCTGACATGGAGCCAG|GTTCCTTCCTACCATCCTCCCTGAAGAGCAACCTCAAGTTAGTGAGCACACATCAGGCTTCTTTTTTGGTCTTGGGACTCTGGGCTGGCAGAGGTGACATCCCTGTCATATGAAGGAAGATGCTCCTTTCTCTGAAGGTTATTGACAGGCAAGCAGCACTGCCTCCAAATTATAACTCAAAAGTTCATAAGTCAACTGAAGAATGAAGGCCAAATGAAAGGACAAATTGAGTGTACAAAAGAGTTTAGTTTTAATATCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-708,hsa-mir-5579 chr11:79402022-79402109:-,chr11:79422169-79422226:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8306 CHD2::CNTNAP4 ENSG00000173575.24::ENSG00000152910.19 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92974950:+ chr15:93429433-93571226:+ chr15:93518180:+ CNTNAP4 ENSG00000152910.19 protein_coding + - chr16:76277278-76560757:+ chr16:76278947:- chr16:76311176-76594654:+ chr16:76312844:- chr15:92977639,chr15:92977638 chr16:76297402,chr16:76297403 NA NA chr15:93520869,chr15:93520868 chr16:76331299,chr16:76331300 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(58%),SNF2-related_domain(100%)| Chromo(100%),Helicase_C(46%),ResIII(100%),SNF2-rel_dom(100%)| 7 2 1 269 8 ENST00000394196.9 unknown downstream downstream none GGAATCGAGTGCTTATCTTCTCTCAGATGGTGAGAATGTTGGATATCCTGGCTGAATACCTAACTATTAAACACTATCCTTTCCAG___CGTCTGGATGGTTCCATCAAGGGAGAAATCCGAAAACAGGCACTGGACCACTTCAATGCAGATGGGTCTGAG|AGTGATGGATACCCTGTGACATTAAATGAGCCCATTCTGAACTGAAACACGAAATCACGGGAGCCAG...TGTTTTTCACATATCAGAACTCTTAACATAGTCAAGTGATATGCCATAGCAAATGTCTGATTACTGCCTCTGTTCCCCAAATCTAAGCCTGATGATACAGCAGCAACATAAATTCCTGGA NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE|sdgypvtlnepiln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8307 CHD2::ENSG00000287694 ENSG00000173575.24::ENSG00000287694.1 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92974950:+ chr15:93429433-93571226:+ chr15:93518180:+ ENSG00000287694 ENSG00000287694.1 protein_coding + - chr16:76277288-76819624:+ chr16:76278947:- chr16:76311186-76853521:+ chr16:76312844:- chr15:92977639,chr15:92977638 chr16:76297402,chr16:76297403 NA NA chr15:93520869,chr15:93520868 chr16:76331299,chr16:76331300 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(58%),SNF2-related_domain(100%)| Chromo(100%),Helicase_C(46%),ResIII(100%),SNF2-rel_dom(100%)| 7 2 1 269 8 ENST00000394196.9 unknown downstream downstream none GGAATCGAGTGCTTATCTTCTCTCAGATGGTGAGAATGTTGGATATCCTGGCTGAATACCTAACTATTAAACACTATCCTTTCCAG___CGTCTGGATGGTTCCATCAAGGGAGAAATCCGAAAACAGGCACTGGACCACTTCAATGCAGATGGGTCTGAG|AGTGATGGATACCCTGTGACATTAAATGAGCCCATTCTGAACTGAAACACGAAATCACGGGAGCCAG...TGTTTTTCACATATCAGAACTCTTAACATAGTCAAGTGATATGCCATAGCAAATGTCTGATTACTGCCTCTGTTCCCCAAATCTAAGCCTGATGATACAGCAGCAACATAAATTCCTGGA NRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSE|sdgypvtlnepiln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 8321 ASPH::LINC02842 ENSG00000198363.18::ENSG00000254119.5 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ASPH ENSG00000198363.18 protein_coding - - chr8:61500556-61714640:- chr8:61548071:- chr8:62413115-62627199:- chr8:62460630:- LINC02842 ENSG00000254119.5 lncRNA + - chr8:61785047-61944180:+ chr8:61835121:- chr8:62697606-62856739:+ chr8:62747680:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Aspartyl_beta-hydroxylase_N-terminal_region(100%),Tetratricopeptide_repeat(100%)| Asp-B-Hydro_N(100%),TPR_16(100%),TPR_6(100%),TPR_8(100%)| 1 5 18 3385 9 ENST00000379454.9 unknown upstream downstream duplicates(1),mismatches(2) CTGGCACTGATGATGGGAGATTTTATTTCCACCTGGGGGATGCCATGCAGAGGGTTGGGAACAAAGAG___GCATATAAGTGGTATGAGCTTGGGCACAAGAGAGGACACTTTGCATCTGTCTGGCAACGCTCACTCTACAATGTGAATGGACTGAAAGCACAGCCTTGGTGGACCCCAAAAGAAACGGGCTACACAGAGTTAGTAAAG|GTACCCTTCCTGTCTTCCCCAGTCATCCTGGATACCAAATAGCCATGTCTATGCCCAAGGATGCCTATAAAGGAAGAACTCAAAACAGAACTCCATGGAGCTTCAGAATCTAAGAGAAAACTTACCCACAATTCTCAGTTGCTTCGAGAGAACAATGGACACCCTGCGCCCGGTGGGTCCCAAGCCTGGTCACTCAATGCTCCTGGGGGTTGCTAGATGCCCCACTGCAGGTCCCACTTCTGATACCATCTGTTGGGGAATGATTTGCAAATTGAGCAGCCACCAGAATCAGAATAGGTTCAGAGAGACTCTGTGCTGCCACATGCTTGGAGGGGATTTATGACTA GTDDGRFYFHLGDAMQRVGNKEAYKWYELGHKRGHFASVWQRSLYNVNGLKAQPWWTPKETGYTELVK|vpflsspvildtk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8322 NARS2::GAB2 ENSG00000137513.11::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE TRUE 830 TRUE 1453 TRUE 566 NARS2 ENSG00000137513.11 protein_coding - - chr11:78435620-78575194:- chr11:78465876:- chr11:78146666-78286239:- chr11:78176922:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none OB-fold_nucleic_acid_binding_domain(100%),tRNA_synthetases_class_II_(D__K_and_N)_(75%)|PH_domain(82%) tRNA-synt_2(77%),tRNA_anti-codon(100%)|PH(0%) 4 2 12 2573 440 ENST00000281038.10 ENST00000361507.5 upstream downstream duplicates(2),mismatches(1) GTTGAACTCTGTCACAAATTCATAGCACCTGGCCAAAAG___GACAGATTAGAACATATGCTAAAAAACAACTTTTTAAT___CATTTCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAG___TGGGGTGCTGACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAG...TCTAGCCAGCACCTTCTCCGAGAGCGCAAGTCCTCAGCCCCATCACACTCCAGCCAGCCAACTCTGTTCACGTTTGAACCCCCTGTGTCAAACCACATGCA VELCHKFIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEKYLVKHCGNIPVFVINYPLTLKPFYMRDNEDGPQHT|AWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSIC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8323 NARS2::GAB2 ENSG00000137513.11::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1453 TRUE 566 NARS2 ENSG00000137513.11 protein_coding - - chr11:78435620-78575194:- chr11:78457332:- chr11:78146666-78286239:- chr11:78168378:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78318219:- chr11:77926339-78129394:- chr11:78029265:- NA NA NA NA NA NA NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site deletion/read-through medium none OB-fold_nucleic_acid_binding_domain(100%),tRNA_synthetases_class_II_(D__K_and_N)_(75%)|PH_domain(82%) tRNA-synt_2(84%),tRNA_anti-codon(100%)|PH(27%) 0 1 14 83 1 ENST00000695366.1 ENST00000361507.5 upstream downstream duplicates(2),mismatches(1) GAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACG___G?CTGTAATAACTGGCTGTAAGTTCGCAAGAGTTCCTGTAATGGATGCAGTGCAGTCTTGAAAAAAATAAGACAG|ATTCACTCCTGATCCCTCATCT...CAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8344 SBF2-AS1::SBF2 ENSG00000246273.9::ENSG00000133812.18 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SBF2-AS1 ENSG00000246273.9 lncRNA + + chr11:9758268-9811335:+ chr11:9758503:+ chr11:9779815-9832882:+ chr11:9780050:+ SBF2 ENSG00000133812.18 protein_coding - + chr11:9776776-10304877:- chr11:10028411:+ chr11:9798323-10326424:- chr11:10049958:+ chr11:9790830,chr11:9790830 chr11:9997578,chr11:9997575 NA NA chr11:9812377,chr11:9812377 chr11:10019125,chr11:10019122 NA NA sense antisense unknown exon/splice-site CDS deletion/read-through/5'-5' low none none none 1 0 2 52 4 ENST00000663578.1 unknown downstream upstream duplicates(1) GTTCCAGCCCCGACCCGGGCGCGCGGGGCCGACTAGGGTCGGGTCCAGTGTGCGGTGGTCGCTCCGCTCCGGGCCGCTCCGCTCTGGGCGTCAGGGCGCGGGGAGCTGCCCCGGGGTTCTGTCCACCG...TGAGAGCCAGCCCTGACGTGAACTCATTTTATCTGCCACGACCCAGAAG|GCTTCTACAAGATGACATTGAAAATGGGAGAAAAGACATACCCAATTGCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8363 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75621625:+ chr6:76311225-76427997:+ chr6:76331341:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 27 22 28 294 117 ENST00000447266.7 ENST00000660355.1 downstream downstream duplicates(3),low_entropy(2),mismappers(1),mismatches(6) GGAGGAAGATGGCGGCCGGCAAGAGCGGCGGTAGCGCAGGGGAGATTACTTTTCTGGAAG___CTTTGGCTAGATCAGAGTCTAAGAGAGATGGAGGTTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGATAAAGA|ATCATTTGCTCCAGAAGAAGCTGGTTGCCATGTCTTGAGGACAGTAAACCCTCTGGGGAGGTTCCTGTGGTAAGGAACAAGGGCTCCTGGCAATAGCCTCTGAGTGAGCCACCTTGAAAATGGATTGTCCAGCCCCAGTCAAGCTTTCAGATGACTGTAGCTCCTGCCAATGTCTTCACCACAACCTCATGAGATCCCAAGCTACAACCACTCAGTTAAGTTATG MAAGKSGGSAGEITFLEALARSESKRDGGFKNNWSFDHEEESEGDTDKe|sfapeeagchvlrtvnplgrflw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8364 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75602576:+ chr6:76311225-76427997:+ chr6:76312292:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 9 28 15 290 117 ENST00000447266.7 ENST00000660355.1 downstream downstream duplicates(2),mismatches(3) CCCGCGGACAGGCCCGGGCGCGCCTGGCCTGCCTTTGTATAGGCCCGTCTGAACGTGGGAGCGCAGCCCGCCTGACGGCTGAGCCCGAGGCCCGCAACCCTGCGGCGTCTACCCTCCTCCGGCGCGGCCCCTCATCCCGGCGAGCACGGCGGCGGTGTGGGCCATGGATTAAGAAGGAGGCGGCGTGGGAGGAGGAAGATGGCGGCCGGCAAGAGCGGCGGTAGCGCAGGGGAGATTACTTTTCTGGAAG|ATCATTTGCTCCAGAAGAAGCTGGTTGCCATGTCTTGAGGACAGTAAACCCTCTGGGGAGGTTCCTGTGGTAAGGAACAAGGGCTCCTGGCAATAGCCTCTGAGTGAGCCACCTTGAAAATGGATTGTCCAGCCCCAGTCAAGCTTTCAGATGACTGTAGCTCCTGCCAATGTCTTCACCACAACCTCATGAGATCCCAAGCTACAACCACTCAGTTAAGTTATGCCAAAATTCCTGATTCACAGAAATTGACATACAGGAGAGGTCACAGTTAAGATCTTGATGTTCT...___GAACTTCATCTTTTGGGAAGCACCAGGGAGAGCTGCCTGTGCCTGGCAGAAGCTGCCCATGCCCCACTGA MAAGKSGGSAGEITFLE|dhllqkklvams* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8365 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75622858:+ chr6:76311225-76427997:+ chr6:76332574:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site inversion high none none none 10 5 29 56 117 ENST00000493959.6 ENST00000660355.1 downstream downstream duplicates(1),mismatches(4) AGGTTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGATAAAGA___GTGCTTCACTTCTGTCTGGGCAACAGCTCCGTTCATCATTACCACTTTATGTGCCTTCACCGATGAGATGTTGATTTGAAGTTTTATTTGAAGGAGAGCTTTGAACTG|ATCATTTGCTCCAGAAGAAGCTGGTTGCCATGTCTTGAGGACAGTAAACCCTCTGGGGAGGTTCCTGTGGTAAGGAACAAGGGCTCCTGGCAATAGCCTCTGAGTGAGCCACCTTGAAAATGGATTGTCCAGCCCCAGTCAAGCTTTCAGATGACTGTAGCTCCTGCCAATGTCTTCACCACAACCTCATGAGATCCCAAGCTACAACCACTCAGTTAAGTTATGCCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8366 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75622858:+ chr6:76311225-76427997:+ chr6:76332574:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146858416:- chr6:147145675-147525750:- chr6:147179552:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site inversion high none none none 0 2 33 56 7 ENST00000493959.6 ENST00000666983.1 downstream downstream duplicates(2),mismatches(4) GGgTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGATAAAGA___GTGCTTCACTTCTGTCTGGGCAACAGCTCCGTTCATCATTACCACTTTATGTGCCTTCACCGATGAGATGTTGATTTGAAGTTTTATTTGAAGGAGAGCTTTGAACTG|CACAAATCTTCTCTAGAATACAGAAATATTCTAGAGATCACTGACGCATTTGAGGGAAATTGAAAACAAAACGAAACAGAACAAACAGAAGCCTTAAACAGTAAAATAACAGCAAGATGAAACTGATTTAAGACAATCAAATAACATCGTTTCCTGTTCATTCTCCAAACACAAGCTTTCTCTCGCTTTGACAG___AAGCAGAAAGACCCGGAGAAGaCCGGGATGTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8367 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75621625:+ chr6:76311225-76427997:+ chr6:76331341:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146858416:- chr6:147145675-147525750:- chr6:147179552:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 0 31 294 7 ENST00000447266.7 ENST00000666983.1 downstream downstream duplicates(3),low_entropy(1),mismatches(4) AGGAGGAAGATGGCGGCCGGCAAGAGCGGCGGTAGCGCAGGGGAGATTACTTTTCTGGAAG___CTTTGGCTAGATCAGAGTCTAAGAGAGATGGAGGTTTTAAAAATAATTGGAGCTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGATAAAGA|CACAAATCTTCTCTAGAATACAGAAATATTCTAGAGATCACTGACGCATTTGAGGGAAATTGAAAACAAAACGAAACAGAACAAACAGAAGCCTTAAACAGTAAAATAACAGCAAG MAAGKSGGSAGEITFLEALARSESKRDGGFKNNWSFDHEEESEGDTDKd|tnll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8368 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75602576:+ chr6:76311225-76427997:+ chr6:76312292:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146844712:- chr6:147145675-147525750:- chr6:147165848:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 5 1 290 467 ENST00000447266.7 ENST00000427394.5 downstream downstream none CGCGGGCCTCGCTGCCCGCCAGCCCGCGGACAGGCCCGGGCGCGCCTGGCCTGCCTTTGTATAGGCCCGTCTGAACGTGGGAGCGCAGCCCGCCTGACGGCTGAGCCCGAGGCCCGCAACCCTGCGGCGTCTACCC...TTAAGAAGGAGGCGGCGTGGGAGGAGGAAGATGGCGGCCGGCAAGAGCGGCGGTAGCGCAGGGGAGATTACTTTTCTGGAAG|GCTCATAGATGGAAGGGACTTGCCTTGTCGCTGATGAGACTTTCGACTTGGACTTTTGAGTCAATGCTGGAATGAGTTAAGACTTTGGGGAACTGTTGGAAGGGTGTGATTGTGTTTTGAATTGTGAGGACATGAGATTTTGAAGAGGCTAATGGCAGCGTCCCCACCTAAATCTCaTCTTGAATTGTAGTTCCCATAATCCCCACGTGTCGTGGGGTGG MAAGKSGGSAGEITFLE|gs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8369 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75621625:+ chr6:76311225-76427997:+ chr6:76331341:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146844712:- chr6:147145675-147525750:- chr6:147165848:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 1 294 467 ENST00000447266.7 ENST00000427394.5 downstream downstream none CTTTGATCATGAAGAAGAAAGTGAAGGAGATACAGATAAAGA|GCTCATAGATGGAAGGGACTTGCCTTGTCGCTGATGAGACTTTCGACTTGaACTTTTGA...GCTGGAATGAGTTAAGACTTTGGGGAACTGTTGGAAGGGTGTGATTGTGTTTTGAATTGTGAGGACATGAGATTTTGAAGAGGCTAATGGCAGCGTCCCCA...ATCTCaTCTTGAATTGTAGTTCCCATAATCCCCACGTGTCGTGGGGTGGAcCCGGTGGAGATAATTGAATCATGGGAACACTTTCCCCCATGCTGTTATTG FDHEEESEGDTDKe|lidgrdlpcr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8371 VOPP1::ABCB1 ENSG00000154978.13::ENSG00000085563.15 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1461 TRUE 568 VOPP1 ENSG00000154978.13 protein_coding - - chr7:55436056-55572988:- chr7:55572271:- chr7:55503749-55640681:- chr7:55639964:- ABCB1 ENSG00000085563.15 protein_coding - + chr7:87503017-87713323:- chr7:87616449:+ chr7:87132333-87342639:- chr7:87245765:+ chr7:55553070,chr7:55553072,chr7:55553074 chr7:87610379,chr7:87610227,chr7:87610375 NA NA chr7:55620763,chr7:55620765,chr7:55620767 chr7:87239695,chr7:87239543,chr7:87239691 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 7 25 14 839 210 ENST00000285279.10 unknown upstream upstream mismatches(7),multimappers(5) CCGCCCCGCGCGGGGGCCGAGTCGCGAAGCGCGCCTGCGACCCGGCGTCCGGGCGCGCTGGAGAGGACGCGAGGAGCCATGAGGCGCCAGCCTGCGAAGGTGGCGGCGCTGCTGCTCGGGCTGCTCTTGGAG|CAGAAACAATGTTAAGGTCAAAATCATGGAGCTCTTGCCAAGCCATCAGACTTGATATTCACTGGAATATCTTAAGGAAGGACAACTAATGAAAACAGCTAACAATTCTGCAGCACTTGCTACACATCATGCCCTAAGAGTTTCGTTTATGATCATGGTATCTCCCCACCAG___ACAGAGTCTCGCTCTGTTGCCCAGGCTGGACTGCAATGGCACGATCTTGACTCACTGCAACCTCCACCTTGCGGGTTCAAGTAATT MRRQPAKVAALLLGLLLE|qkqc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8372 VOPP1::ABCB1 ENSG00000154978.13::ENSG00000085563.15 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1461 TRUE 568 VOPP1 ENSG00000154978.13 protein_coding - + chr7:55436056-55572988:- chr7:55535665:+ chr7:55503749-55640681:- chr7:55603358:+ ABCB1 ENSG00000085563.15 protein_coding - - chr7:87503017-87713323:- chr7:87601078:- chr7:87132333-87342639:- chr7:87230394:- chr7:55553077 chr7:87610378 NA NA chr7:55620770 chr7:87239694 NA NA antisense sense unknown intron 5'UTR/splice-site inversion/3'-3' low none |ABC_transporter(100%),ABC_transporter_transmembrane_region(100%) |ABC_ATPase(100%),ABC_membrane(100%),ABC_tran(100%) 0 1 0 8 12 unknown ENST00000265724.8 downstream downstream none TTCCATCTGGAAAACACTTCTTCAGAGTTTCCACCAACGGAGCCTCAGCCTCAGTGTCACTTGGATGAAAATTTTCGAGACTTCCAGAAG|AGAGGTGCAACGGAAGCCAGAACATTCCTCCTGGAAATTCAACCTGTTTCGCAGTTTCTCGAGGAATCcGCATTCAGTCAATCCGGGCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8375 PTPRG::UTRN ENSG00000144724.20::ENSG00000152818.20 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE TRUE 835 TRUE 1463 TRUE 569 PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:61748982:+ chr3:61547243-62283284:+ chr3:61734656:+ UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144461197:+ chr6:144606471-145174170:+ chr6:144782333:+ chr3:61752691,chr3:61752687 chr6:144461097,chr6:144461090 NA NA chr3:61738365,chr3:61738361 chr6:144782233,chr6:144782226 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Eukaryotic-type_carbonic_anhydrase(1%)|EF-hand(100%),EF_hand(100%),Spectrin_repeat(79%),WW_domain(100%),Zinc_finger__ZZ_type(100%) |EF-hand_2(100%),EF-hand_3(100%),Spectrin(98%),WW(100%),ZZ(100%) 16 9 9 97 36 ENST00000474889.6 ENST00000367545.8 downstream upstream duplicates(1),mismatches(2) CCTGAAAATCACCAGTTCCGTGCTCCATTATGTCGTGTGCTTCCCCG___CGTTGACAGAAGGCTACGTTGGGGCCCTGCACGAGAATAGACACGGCAGCGCAGTGCAGATCCGCAGGCGCAAGGCTTCAGGCGACCCGTACTGGGCCTACTCTG|AACTGAAGGGCCAACCTGGACATGCATATCTGGAAACATTGAAAACACTGAAAGATGTGCTAAATGATTCAGAAAATAAGGCCCAGGTGTCTCTGAATGTCCTTAATGATCTTGCCAAGGTGGAGAAGGCCCTGCAAGAAAAAAAG___ACCCTTGATGAAATCCTTGAGAATCAGAAACCTGCATTACATAAACTTGCAGAAGAA LKITSSVLHYVVCFPALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYS|eLKGQPGHAYLETLKTLKDVLNDSENKAQVSLNVLNDLAKVEKALQEKKTLDEILENQKPALHKLAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8376 PTPRG::UTRN ENSG00000144724.20::ENSG00000152818.20 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1463 TRUE 569 PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:61748982:+ chr3:61547243-62283284:+ chr3:61734656:+ UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144473720:+ chr6:144606471-145174170:+ chr6:144794856:+ chr3:61752691,chr3:61752687 chr6:144461097,chr6:144461090 NA NA chr3:61738365,chr3:61738361 chr6:144782233,chr6:144782226 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Eukaryotic-type_carbonic_anhydrase(1%)|EF-hand(100%),EF_hand(100%),Spectrin_repeat(78%),WW_domain(100%),Zinc_finger__ZZ_type(100%) |EF-hand_2(100%),EF-hand_3(100%),Spectrin(96%),WW(100%),ZZ(100%) 1 1 3 97 85 ENST00000474889.6 ENST00000367545.8 downstream upstream mismatches(1) CTGAAAATCACCAGTTCCGTGCTCCATTATGTCGTGTGCTTCCCCG___CGTTGACAGAAGGCTACGTTGGGGCCCTGCACGAGAATAGACACGGCAGCGCAGTGCAGATCCGCAGGCGCAAGGCTTCAGGCGACCCGTACTGGGCCTACTCTG|GCCGATTCAACAGTCATTGAGAAGTGGATGGATGGCGTGAAAGACTTCTTAATGAAACAGCAGGCTGCCCAAGGAGACGACGCAGGTCTACAGAGGCAGTTAGACCAGTGCTCT___GCATTTGTTAATGAAATAGAAACAATTGAATCATCTCTGAAAAACATGAAGGAAA LKITSSVLHYVVCFPALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYS|grfnsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8384 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE TRUE 837 TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32380290:+ chr2:32582091-32844638:+ chr2:32605358:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47839769:- chr2:48016455-48133637:- chr2:48066908:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |F-box-like(100%),Periplasmic_copper-binding_protein_(NosD)(100%),Putative_zinc_finger_in_N-recognin_(UBR_box)(100%),Right_handed_beta_helix_region(100%) |Beta_helix(100%),F-box(100%),F-box-like(100%),MutS_I(100%),MutS_II(100%),MutS_III(100%),MutS_IV(100%),MutS_V(100%),NosD(100%),PWWP(100%),zf-UBR(100%) 5 7 15 112 237 ENST00000700518.1 ENST00000403359.8 downstream downstream duplicates(1),mismatches(2) GTGAAATGTCAGTATATCTCTGCTGTGGATAAAGTTATATTTGTGGATGATTATGCAGTAGGGTGTAGGAAGGACCTTAATGGAATCTTGTTGTTAGACACTGCTCTGCAAACTCCAGTTTCAAAGCAGGATGATGTGGTTCAGCTTGAATTACCCGTTACAGAG___GCACAGCAGCTCTTATCAGCATGTTTAGAAAAGGTAGATATTTCTAGTACAGAGGGTTATGATTTGTTCATCACACAGCTCAAAGATGGTTTAAAAAATACATCTCATGAGACTGCAGCAAACCACAAAGTTGCTAAG|ATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAG___GGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCACA VKCQYISAVDKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACLEKVDISSTEGYDLFITQLKDGLKNTSHETAANHKVAK|mmmclqiwlqknqvlvhkivhtnfveklfcrkeqrvpqrtvwrapqlqlqktlvivqnvqeclenh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 8385 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32380290:+ chr2:32582091-32844638:+ chr2:32605358:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47865892:- chr2:48016455-48133637:- chr2:48093031:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none |F-box-like(100%),Periplasmic_copper-binding_protein_(NosD)(100%),Putative_zinc_finger_in_N-recognin_(UBR_box)(100%),Right_handed_beta_helix_region(100%) |Beta_helix(100%),F-box(100%),F-box-like(100%),MutS_I(100%),MutS_II(100%),MutS_III(100%),MutS_IV(100%),MutS_V(100%),NosD(100%),PWWP(100%),zf-UBR(100%) 1 0 15 112 0 ENST00000700518.1 ENST00000480038.1 downstream downstream duplicates(1),mismappers(2),mismatches(1) GTTATATTTGTGGATGATTATGCAGTAGGGTGTAGGAAGGACCTTAATGGAATCTTGTTGTTAGACACTGCTCTGCAAACTCCAGTTTCAAAGCAGGATGATGTGGTTCAGCTTGAATTACCCGTTACAGAG___GCACAGCAGCTCTTATCAGCATGTTTAGAAAAGGTAGATATTTCTAGTACAGAGGGTTATGATTTGTTCATCACACAGCTCAAAGATGGTTTAAAAAATACATCTCATGAGACTGCAGCAAACCACAAAGTTGCTAAG|TTAATCCTCACAGTGGTTCTCAGAAGTAAATATTTTTCTGCCATTTTACCCATGTGGAAAC VIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACLEKVDISSTEGYDLFITQLKDGLKNTSHETAANHKVAK|liltvvlrskyfsailpmwk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 8386 FBXO11::BIRC6 ENSG00000138081.22::ENSG00000115760.16 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE TRUE 838 TRUE 1466 TRUE 571 FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47905489:- chr2:48016455-48133637:- chr2:48132628:- BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32388750:+ chr2:32582091-32844638:+ chr2:32613818:+ chr2:47880944,chr2:47880946 chr2:32385267,chr2:32385265 NA NA chr2:48108083,chr2:48108085 chr2:32610335,chr2:32610333 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Baculoviral_IAP_repeat-containing_protein_6__(100%),Inhibitor_of_Apoptosis_domain(100%),Ubiquitin-conjugating_enzyme(100%) |BIR(100%),BIRC6(100%),UQ_con(100%) 3 7 6 75 147 ENST00000403359.8 ENST00000700518.1 upstream upstream none CGCCCCAGCAGCAGCCGCCCCAGCAGCAGCCTCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCCTCCGCCGCCGCCACCGCCGCCTCCGCCGCTGCCTCAGGAGCGGAACAACGTCGGCGAGCGGG|TGGGCCACAGTTACATTTCATCTTCCTCATCATGTGTTGAAGTCCATTGCCAGTGCCATTGTAAATGAACTCAAGAAAATAAATCAAAATGTTGCTGCCTTACCTGTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACCTAGTGCACGTCCAGAACTCGGAGTGGGGCCAGGCCGTTCTGTAGACAG___ATCACTGATGTATAGTGAAGCTAACAGACGGGAGACATTTACCTCATGGCCTCATGTAGGCTATAGGTG PQQQPPQQQPPPPPQQQQQQQPPPPPPPPPPLPQERNNVGER|vghsyissssscvevhcqchck* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-558 chr2:32532153-32532246:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense 8387 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE TRUE 839 TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32357486:+ chr2:32582091-32844638:+ chr2:32582554:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47839769:- chr2:48016455-48133637:- chr2:48066908:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |F-box-like(100%),Periplasmic_copper-binding_protein_(NosD)(100%),Putative_zinc_finger_in_N-recognin_(UBR_box)(100%),Right_handed_beta_helix_region(100%) |Beta_helix(100%),F-box(100%),F-box-like(100%),MutS_I(100%),MutS_II(100%),MutS_III(100%),MutS_IV(100%),MutS_V(100%),NosD(100%),PWWP(100%),zf-UBR(100%) 0 9 3 90 237 ENST00000700518.1 ENST00000403359.8 downstream downstream duplicates(1),mismatches(1) CCGACGGGCTGCACAGCCTGTCCTACCACCCTGCGCTCAACGCCATCCTGGCCGTCACTAGCCGCGGGACCATCAAAGTCATCGACGGCACCTCGGGGGCCACACTGCAGGCCTCCGCGCTCAGTG|ATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAG___GGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCACAAGATCTATCAG___CAGCACCTGCTGAACAGTATCTTCAGGAGAAACTGCC DGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALS|dDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 8388 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32377769:+ chr2:32582091-32844638:+ chr2:32602837:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47839769:- chr2:48016455-48133637:- chr2:48066908:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |F-box-like(100%),Periplasmic_copper-binding_protein_(NosD)(100%),Putative_zinc_finger_in_N-recognin_(UBR_box)(100%),Right_handed_beta_helix_region(100%) |Beta_helix(100%),F-box(100%),F-box-like(100%),MutS_I(100%),MutS_II(100%),MutS_III(100%),MutS_IV(100%),MutS_V(100%),NosD(100%),PWWP(100%),zf-UBR(100%) 1 0 6 163 237 ENST00000700518.1 ENST00000403359.8 downstream downstream mismatches(1) GGATAAAGTTATATTTGTGGATGATTATGCAGTAGGGTGTAGGAAGGACCTTAATGGAATCTTGTTGTTAGACACTGCTCTGCAAACTCCAGTTTCAAAGCAGGATGATGTGGTTCAGCTTGAATTACCCGTTACAGAG|ATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAG___GGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCAC DKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTE|mmmclqiwlqknqvlvhkivhtnfveklfcrkeqrvpqrtvwrapqlqlqktlvivqnvqeclen NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 8389 FBXO11::BIRC6 ENSG00000138081.22::ENSG00000115760.16 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1466 TRUE 571 FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47905489:- chr2:48016455-48133637:- chr2:48132628:- BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32463194:+ chr2:32582091-32844638:+ chr2:32688262:+ chr2:47880944,chr2:47880946 chr2:32385267,chr2:32385265 NA NA chr2:48108083,chr2:48108085 chr2:32610335,chr2:32610333 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Baculoviral_IAP_repeat-containing_protein_6__(100%),Ubiquitin-conjugating_enzyme(100%) |BIRC6(100%),UQ_con(100%) 0 1 0 75 144 ENST00000403359.8 ENST00000700518.1 upstream upstream none CGCCGCTGCCTCAGGAGCGGAACAACGTCGGCGAGCGGG|TGAGTTCCTTCGGGGTTACTCCTGCAGTAGGTGGACTATCATCTGGGACAGTTGGGGAAGC PLPQERNNVGER|vSSFGVTPAVGGLSSGTVGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-558 chr2:32532153-32532246:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense 8390 MSI2::MYT1 ENSG00000153944.12::ENSG00000196132.14 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1467 TRUE 572 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ MYT1 ENSG00000196132.14 protein_coding + + chr20:64102394-64242253:+ chr20:64151697:+ chr20:62733747-62873606:+ chr20:62783050:+ chr17:57373820,chr17:57374226,chr17:57373818 chr20:64144859,chr20:64144886,chr20:64144854 NA NA chr17:55451181,chr17:55451587,chr17:55451179 chr20:62776212,chr20:62776239,chr20:62776207 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|Myelin_transcription_factor_1(100%),Zinc_finger__C2HC_type(100%) RRM_1(2%)|MYT1(100%),zf-C2HC(100%) 4 10 8 386 74 ENST00000284073.7 ENST00000659024.1 downstream upstream low_entropy(1),mismappers(1),mismatches(12) TCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|GTTTCCATTTGCATCTGGCTTTTGTGTGGCACTAGAAGAGATCAGCTTTTTGCAAGCATGGGGCTGATGAACGCATTTGCACAAAGGGAGACGGCGGAGTAGCAGGAGTTTGCAAGCTGCTTCATTAACTTGGAGCCAGTGGAATGTCTGGGATCGTCTGTGATTTGGAAACCGGTGGCAGAATGTTCCCGCGTTTCTGGTCCTCATCAGTCAG ADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK|vsiciwllcgtrrdqlfasmglmnafaqretae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8391 MSI2::MYT1 ENSG00000153944.12::ENSG00000196132.14 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1467 TRUE 572 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ MYT1 ENSG00000196132.14 protein_coding + + chr20:64102394-64242253:+ chr20:64190063:+ chr20:62733747-62873606:+ chr20:62821416:+ chr17:57373820,chr17:57374226,chr17:57373818 chr20:64144859,chr20:64144886,chr20:64144854 NA NA chr17:55451181,chr17:55451587,chr17:55451179 chr20:62776212,chr20:62776239,chr20:62776207 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|Myelin_transcription_factor_1(100%),Zinc_finger__C2HC_type(100%) RRM_1(2%)|MYT1(100%),zf-C2HC(100%) 0 0 0 386 121 ENST00000579483.1 ENST00000644172.2 downstream upstream mismatches(2) GATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|AAAATGAGTTCCGAGGTGAGCTGTTAAATCAGAGGTGGACACACGGAGGCAAGGCCAGCAGCTGCAGGACCTCAAGACACCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8392 TSC1::PRRC2B ENSG00000165699.15::ENSG00000288701.1 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE TRUE 840 TRUE 1468 TRUE 573 TSC1 ENSG00000165699.15 protein_coding - - chr9:132891348-132946874:- chr9:132921363:- chr9:135766735-135822261:- chr9:135796750:- PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131459164:+ chr9:134249023-134375584:+ chr9:134334551:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Hamartin_protein(32%)| Hamartin(28%)| 4 6 5 115 1206 ENST00000643362.2 ENST00000684596.1 upstream upstream duplicates(1) CTTGATTTCTTTGACATTTTTGGCCGTCTGTCATCATGGTGCCTGAAGAAACCAG___GCCACGTGGCGGAAGTCTATCTCGTCCATCTCCATGCCAGTGTGTACGCACTCTTTCATCGCCTTTATGGAATGTACCCTTGCAACTTCGTCTCCTTTTTGCGTTCTCATTACAGTATGAAAGAAAACCTGGAGACTTTTGAAGAAGTGGTCAAG___CCAATGATGGAGCATGTGCGAATTCATCCGGAATTAGTGACTGGATCCAAGGACCATGAACTGGACCCTCGAAG|GAACAGTTGGGACCCTAGGAGGCAGCGGCAGTTGTCAATGAGCTCTGCAGACAGTGCGGACGCTAAGCGGACTCGAGAGGAAGGGAAGGACTGGGCTGAAGCAGTGGGTGCGTCCCGTGTGGTCCGAAAGGCGCCAGACCCTCAGCCACCGCCCAGGAAGCTTCATGGCTGGGCACCAGGCCCTGACTACCAG___AAGTCATCAATGGGCAGCATGTTCCGGCAACAGTCCATCGAGGACAAGGAGGACAAGC LDFFDIFGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRr|NSWDPRRQRQLSMSSADSADAKRTREEGKDWAEAVGASRVVRKAPDPQPPPRKLHGWAPGPDYQKSSMGSMFRQQSIEDKEDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tuberous sclerosis 1 gene 1 Yes renal cell carcinoma, bladder carcinoma hamartoma, renal cell carcinoma, tuberous sclerosis tuber Tuberous sclerosis 1 epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 8393 TSC1::PRRC2B ENSG00000165699.15::ENSG00000288701.1 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE FALSE NA TRUE 1468 TRUE 573 TSC1 ENSG00000165699.15 protein_coding - - chr9:132891348-132946874:- chr9:132921819:- chr9:135766735-135822261:- chr9:135797206:- PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131459164:+ chr9:134249023-134375584:+ chr9:134334551:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Hamartin_protein(29%)| Hamartin(26%)| 1 0 4 120 1206 ENST00000646440.2 ENST00000684596.1 upstream upstream none ATAAGCTCTCTCAAGCACCTCTTTTGCCTTCTTTACTAAAATGTCTCAAG___ATGGACACTGACGTCGTTGTCCTCACAACAGGCGTCTTGGTGTTGATAACC...AATGATTCCACAGTCTGGGAAACAGCATCTTCTTGATTTCTTTGACATTTTTGGCCGTCTGTCATCATGGTGCCTGAAGAAACCAG___GCCACGTGGCGGAAGTCTATCTCGTCCATCTCCA...CTCTTTCATCGCCTTTATGGAATGTACCCTTGCAACTTCGTCTCCTTTTTGCGTTCTCATTACAGTATGAAAGAAAACCTGGAGACTTTTGAAGAAGTGGTCAAG|GAACAGTTGGGACCCTAGGAGGCAGCGGCAGTTGTCAATGAGCTCTGCAGACAGTGCGGACGCTAAGCGGACTCGAGAGGAAGGGAAGGACTGGGCTGAAGCAGTGGGTGCGTCCCGTGTGGTCCGAAAGGCGCCAGACCCTCAGCCACCGCCCAGGAAGCTTCATGGCTGGGCACCAGGCCCTGACTACCAG___AAGTCATCAATGGGCAGCATGTTCCGG LFHRLYGMYPCNFVSFLRSHYSMKENLETFEEVVK|eqlgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tuberous sclerosis 1 gene 1 Yes renal cell carcinoma, bladder carcinoma hamartoma, renal cell carcinoma, tuberous sclerosis tuber Tuberous sclerosis 1 epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 8394 AKNA::FBXL20 ENSG00000106948.17::ENSG00000108306.13 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE TRUE 841 FALSE NA FALSE NA AKNA ENSG00000106948.17 protein_coding - - chr9:114334156-114394405:- chr9:114374093:- chr9:117096436-117156685:- chr9:117136373:- FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39299084:- chr17:37408916-37558776:- chr17:37455337:- chr9:114369066,chr9:114369072 chr17:39300654,chr17:39300657 NA NA chr9:117131346,chr9:117131352 chr17:37456907,chr17:37456910 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Leucine_Rich_repeat(100%) |LRR_6(100%) 5 4 5 1214 49 ENST00000307564.8 ENST00000394294.7 upstream downstream none GTGCTGTTGAGCAGTGGAGAAGCAGCCCTGGCAAAGGACACGCCTCCTGCCCACCCTATCACCAGGGTACCCCAAGAATTTCAGACGCCTGAGCAAGCCACTGAGCTGGTCCATCAGCTCCAG___GAAGACTACCACAGGCTCCTCACCAAGTACGCTGAGGCCGAGAACACCATTGACCAGCTACGCCTCGGGGCCAAG|GGCCGAGTAGTGGAGAATATTTCAAAACGATGTGGGGGCTTTTTACGAAAGTTAAGTCTTCGTGGATGTCTTGGAGTGGGAGACAATGCATTAAG___AACCTTTGCACAAAACTGCAGGAACATTGAAGTACTGAATCTAAATGGGTGTACAAAGACAACAGACGC___TGAGGGATGTCCACTGTTGGAGCAGTTGAACATTTCCTGGTGTGACCAAGTAACCAAGGATGGC VLLSSGEAALAKDTPPAHPITRVPQEFQTPEQATELVHQLQEDYHRLLTKYAEAENTIDQLRLGAK|GRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDAEGCPLLEQLNISWCDQVTKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8395 FBXL20::AKNA ENSG00000108306.13::ENSG00000106948.17 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39301001:- chr17:37408916-37558776:- chr17:37457254:- AKNA ENSG00000106948.17 protein_coding - - chr9:114334156-114394405:- chr9:114368595:- chr9:117096436-117156685:- chr9:117130875:- chr17:39300671 chr9:114369071 NA NA chr17:37456924 chr9:117131351 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none F-box-like(100%)|AT-hook-containing_transcription_factor(100%) F-box(100%),F-box-like(100%)|AKNA(100%) 3 1 0 35 1136 ENST00000264658.11 ENST00000307564.8 upstream downstream none GTTACCCTGTGCCGCTGTGCTCAGGTCTCCAGG___GCCTGGAATGTTCTGGCTCTGGATGGCAGTAACTGGCAGCGAATTGACCTATTTGATTTCCAGAGGGATATTGAG|GTGAACCTGTTCTCTGACCCACCCCAGCCCAACCACAGCATCCACACGGGAATGGTGCCCCAGGGGACCAAGGTCTTGTCCTTCACCATCCCACAGCCCCG VTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIE|VNLFSDPPQPNHSIHTGMVPQGTKVLSFTIPQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8396 ZNF346::C19orf38 ENSG00000113761.12::ENSG00000214212.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF346 ENSG00000113761.12 protein_coding + + chr5:177022696-177081189:+ chr5:177041870:+ chr5:176449697-176508190:+ chr5:176468871:+ C19orf38 ENSG00000214212.9 protein_coding + - chr19:10836575-10869790:+ chr19:10856341:- chr19:10947251-10980466:+ chr19:10967017:- chr5:177042977,chr5:177042975,chr5:177042926 chr19:10863510,chr19:10863512,chr19:10863858 NA NA chr5:176469978,chr5:176469976,chr5:176469927 chr19:10974186,chr19:10974188,chr19:10974534 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none Zinc-finger_of_C2H2_type(25%)| zf-met(20%)| 3 5 1 210 27 ENST00000503039.1 unknown downstream downstream mismatches(1) TTCTGAGTCCCAGAAGCTGGCACATTACCAG___AGCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACATTAAAGGGGGAAACGAAGAAGCTAGACTCAGATCAG|GGCAACAGCCACCAGCCCAGCAAGGAGGAAGAGGGCACCAGCCAGGCTCAGGGAGAGCACCAAGATCCAAGTGGGCACTGGAGGAAAATCAGAAAAGAGAGTGGGCAG___TCTGGGTGCCAGTGGCCAGATGACATCCACC SESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQ|gnshqpskeeegtsqaqgehqdpsghwrkirkesgqsgcqwpddih NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8397 SCAF11::SLC38A4-AS1 ENSG00000139218.18::ENSG00000257261.7 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE FALSE NA TRUE 1469 TRUE 574 SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45990353:- chr12:46312914-46385903:- chr12:46384136:- SLC38A4-AS1 ENSG00000257261.7 lncRNA + + chr12:46383433-46876784:+ chr12:46874817:+ chr12:46777216-47270567:+ chr12:47268600:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 3 3 503 11 ENST00000369367.8 ENST00000667191.1 upstream upstream none CTGCTTCGCCGCCGCCTCCGGACCGAGCCAGCGGAGTCAGTGTCCTAGAGACCCTGTAACACCACAAAGCGGACGAAGGAGTCCATGTTGGGGAACTTGGCAGCGGAGTGACTGGGACCTGGGAACCTACTGTGGGGCCGCGGCCGGACCGAGCGCCTCGACCTCGGTCTGAG|GACCTGATGATTGATTTAGCATCTTTGGCATCCGGCCACTGCTCTGCTTGGCCATACTGCTGCCTTCcCCCTCAGCTGTTGCAcCTCTTTTGGCCACTTTGTGTAACTGCCCTGCCAAGCCCTGCTTCCTGGCTGTCCAAAGAAAGAAGTGTTTCCTACAGGAGATCACAACAAAAGGATGAAATCTGGGGTGCAGGGGAAGGGTAGCTTCTGAAGCTGGAAAATAAAGAA___GATCAAGTTCAGATGGCTTACGGTTGAGATACATGTTGCTATGGCAGCAGGAAGAAAATGATGGAAAAGAAGAAAACAAAAAGCAAGAAAAAGTGAGAAATCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8398 SCAF11::SLC38A4-AS1 ENSG00000139218.18::ENSG00000257261.7 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1469 TRUE 574 SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45961700:- chr12:46312914-46385903:- chr12:46355483:- SLC38A4-AS1 ENSG00000257261.7 lncRNA + - chr12:46383433-46876784:+ chr12:46855993:- chr12:46777216-47270567:+ chr12:47249776:- chr12:45953149 chr12:46869994 NA NA chr12:46346932 chr12:47263777 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none Ring_finger_domain(86%),Zinc_finger__C3HC4_type_(RING_finger)(100%)| zf-C3HC4(0%),zf-C3HC4_2(1%),zf-RING_2(1%),zf-RING_UBOX(0%)| 0 1 1 491 3 ENST00000369367.8 unknown upstream downstream duplicates(2) CTGGTCTGTTGTACAGTGAGGCTGACAGATGCCCAATATGTCTTAATTGTCTATTAGAAAAGGAAGTTGGTTTTCCAGAAAGCTGTAATCATGTCTTCTGTATGACTTGTATTCTTAAATGGGCAGAG|AGTCAAGAAAACTTCTTTTTAAGCTATTT...AGCTTTTAACAATTGAGTAAATTATACTCCTATGAACAAAATTTGGAGCATATTTGTTTCTCTCTACCTGATTTCTACAGAATTTGGAAACTATTTGTGAG...GTGAGTGGATAAAGAAAACATGGAATATATACACAATGGAATAGTATTCAGCCTTGAAAAAGAAGAGAATCCTGCTATCTGCAACAACATGGATGAACCTG GLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAE|sqenfflsy NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8399 SLC38A4-AS1::SCAF11 ENSG00000257261.7::ENSG00000139218.18 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC38A4-AS1 ENSG00000257261.7 lncRNA + + chr12:46383433-46876784:+ chr12:46387972:+ chr12:46777216-47270567:+ chr12:46781755:+ SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45934505:- chr12:46312914-46385903:- chr12:46328288:- chr12:46869994 chr12:45953225 NA NA chr12:47263777 chr12:46347008 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none none 0 1 0 132 412 ENST00000667191.1 ENST00000369367.8 downstream downstream none CAGCAGTAGTAAGACCAGACCAAATCAAACCAAACCAAGCAAACCACGGGGAATGGAG|GAAACTCTTTATACAGTGAAACAGGAGGAAAGAAAAATGCAGC...TGATTAGGCAGAAGAGACATGAACTGGAATTGTCATGGTTTCCTGATACATTACCTGGAATTGGAAG___AATTGGTTTTATACCCTGGAATGTTGAAACAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8402 DLG2::TYW1 ENSG00000150672.19::ENSG00000198874.14 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:85325019:- chr11:83166055-85339379:- chr11:85036063:- TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67183126:+ chr7:66460160-66704501:+ chr7:66648113:+ NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site translocation high none L27_1(80%)|Radical_SAM_superfamily(14%),Wyosine_base_formation(100%) L27_1(88%)|Radical_SAM(0%),Wyosine_form(100%) 3 3 1 6 234 unknown ENST00000359626.10 upstream upstream low_entropy(1),mismatches(2) CTGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCGGTCTGAAAAGCGCAATATTCGGGTGGGAGTGACCCAATTTTCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAAtGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGaAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTTGTCCgCGAGcTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8419 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1473 FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21869800,chr9:21869794 chr9:22103655,chr9:22103646 NA NA chr9:21869799,chr9:21869793 chr9:22103654,chr9:22103645 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 1 410 21 ENST00000584988.1 ENST00000428597.6 downstream upstream none CAAAACTGCAGTCACTTTTGAAGTAAGGAAAACATTTAGGGGTGACTTTCTGAGCACATTTAGG___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAA...CTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___GATCTTAACATAGACGTAAGATCAAATGCAATAGCATGTCAAACAATGTGTAACTCCAGTTATACAAACATTACTGTATCTCATTGGGGATACGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8440 ZNF407::ZNF516 ENSG00000215421.10::ENSG00000101493.11 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE FALSE NA TRUE 1478 TRUE 575 ZNF407 ENSG00000215421.10 protein_coding + + chr18:74597870-75065671:+ chr18:74597937:+ chr18:72265106-72777627:+ chr18:72265173:+ ZNF516 ENSG00000101493.11 protein_coding - - chr18:76357682-76495242:- chr18:76362557:- chr18:74069637-74207198:- chr18:74074512:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 0 1 0 67 136 ENST00000299687.10 ENST00000443185.7 downstream downstream none CAGAGGGGCGAGCAGGAGCGATTCCGTCGCCAAACAG|GGGAGAGACCATTCTAACACAGGTACCGTCCAGACAGTGCCTCTGAGAAAGGGAACCTAAAGGC...CCAGGTCCCCGTAACGGCCATTAGCAGTACCCTCACGATGTCCCAGCAGCCTCCCACCTGTGACCTGGCCGCTCCATGGAAGAACAGCCGGGGAACTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8441 ZNF407::ZNF516 ENSG00000215421.10::ENSG00000101493.11 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary arriba TRUE FALSE FALSE NA TRUE 1478 TRUE 575 ZNF407 ENSG00000215421.10 protein_coding + + chr18:74597870-75065671:+ chr18:74781502:+ chr18:72265106-72777627:+ chr18:72493458:+ ZNF516 ENSG00000101493.11 protein_coding - - chr18:76357682-76495242:- chr18:76362557:- chr18:74069637-74207198:- chr18:74074512:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none none zf-met(100%)| 0 1 0 49 136 ENST00000299687.10 ENST00000443185.7 downstream downstream none GGAGTTGGCACCCCAAAAGAAAG|GGGAGAGACCATTCTAACACAGGTACCGTCCAGACAGTGCCTCTGAGAAAGGGAACCTAAAGGCGTGTTTCCGACGCA...GAACAGCCGGGGAACTCCTGAGCAGACACCTCACATCCCGAGCCGCTGCGCTGGAGTGGAAACTGAAGGCAGATGCCTCTCCTTGTTAAACGTTCAGAAAT GVGTPKEr|getiltqvpsrqcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8454 RPSA2::ENSG00000288011 ENSG00000288920.1::ENSG00000288011.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE TRUE 842 TRUE 1482 TRUE 576 RPSA2 ENSG00000288920.1 protein_coding + + chr19:23762944-23871162:+ chr19:23763134:+ chr19:23945746-24053964:+ chr19:23945936:+ ENSG00000288011 ENSG00000288011.1 lncRNA - - chr10:62339553-62375166:- chr10:62354647:- chr10:64099312-64134925:- chr10:64114406:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 300 300 198 1007 832 ENST00000692590.1 ENST00000669855.1 downstream downstream duplicates(84),low_entropy(8),mismatches(7) ATCGGTCTCTTCTGTTCCGCGTCCTCCACCTCGGTAGCCCCTGGTGACTCTGTTACAGCCTCTGTTGACCTATGATCTGCAGGGAGACGCACAGCCAGGACATCCTGGAACCTGGGAAAGG|GATTTCTCACTGTGAGAGAAGTGAGCCACCAGATAGAGAGGACACTCAAACAGCCCCATGCAGAGGCCAATATAGAAAGGATAAAATAGCCAGCATCAACTTACCGGCTTTGTAAGAGAGCCTTTATAACTGAATCCACTGCCCCGGTCAAGCCTTCAGATGACTGCAGCTCTAGCCTACATCTGGCTGCAATCTCAG___GTGTTCAGATCAAGGGAAACTACTCTAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8455 RPSA2::ENSG00000288011 ENSG00000288920.1::ENSG00000288011.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1482 TRUE 576 RPSA2 ENSG00000288920.1 protein_coding + + chr19:23762944-23871162:+ chr19:23763134:+ chr19:23945746-24053964:+ chr19:23945936:+ ENSG00000288011 ENSG00000288011.1 lncRNA - - chr10:62339553-62375166:- chr10:62353021:- chr10:64099312-64134925:- chr10:64112780:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 2 1 28 1007 774 ENST00000692590.1 ENST00000669855.1 downstream downstream duplicates(1) CGCCAGAGTTTGGGATCGGTCTCTTCTGTTCCGCGTCCTCCACCTCGGTAGCCCCTGGTGACTCTGTTACAGCCTCTGTTGACCTATGATCTGCAGGGAGACGCACAGCCAGGACATCCTGGAACCTGGGAAAGG|GTGTTCAGATCAAGGGAAACTACTCTAAGAGGCTACACTTGAGGAACAACAACCAAGGAGCTTCAACTGCATCTGGATTTCAGG___AGTCTGGAAAACTTTTCTTTTGAGCTATTGACAGCCTTTAACAACTGAGTAAAGTGTACTCCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8456 RPSA2::ENSG00000288011 ENSG00000288920.1::ENSG00000288011.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1482 TRUE 576 RPSA2 ENSG00000288920.1 protein_coding + + chr19:23762944-23871162:+ chr19:23763134:+ chr19:23945746-24053964:+ chr19:23945936:+ ENSG00000288011 ENSG00000288011.1 lncRNA - - chr10:62339553-62375166:- chr10:62341669:- chr10:64099312-64134925:- chr10:64101428:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 2 16 1007 624 ENST00000692590.1 ENST00000669855.1 downstream downstream none CCGCCAGAGTTTGGGATCGGTCTCTTCTGTTCCGCGTCCTCCACCTCGGTAGCCCCTGGTGACTCTGTTACAGCCTCTGTTGACCTATGATCTGCAGGGAGACGCACAGCCAGGACATCCTGGAACCTGGGAAAGG|AGTCTGGAAAACTTTTCTTTTGAGCTATTGACAGCCTTTAACAACTGAGTAAAGTGTACTCCTGTGAACAAAATTCAGAGaCTGTTTGTTTCTCTCTACCTGATTTCTCCAGAATTTGGAAACTATTTGTGAGTATTCTTAACTTATGGAAACATAGTTATTTGCATAAGTGCAATAAGAATCTGTTTTCATTTGTAACAGGACACAATTGGAAAAACTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8457 RPSA2::ENSG00000288011 ENSG00000288920.1::ENSG00000288011.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1482 TRUE 576 RPSA2 ENSG00000288920.1 protein_coding + + chr19:23762944-23871162:+ chr19:23776295:+ chr19:23945746-24053964:+ chr19:23959097:+ ENSG00000288011 ENSG00000288011.1 lncRNA - - chr10:62339553-62375166:- chr10:62354647:- chr10:64099312-64134925:- chr10:64114406:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 6 4 203 54 832 ENST00000685490.1 ENST00000669855.1 downstream downstream duplicates(11),inconsistently_clipped(1),mismatches(3) GTGAGTCTCCTCTCATGCCTTGCTGCTGCACACAGAAGCAGGATATGCACAGGATTGTTAATCTCATCTTGGACCTTCCTGCACGTGTGACTGTGACAGATGCTTCTGTGTAGAACCTGAGTGATTTTACTCTCCTGTCTGGATTTAACCCACAGATGAATCGTGACATATCGCTGGACCAGAAACTAG|GATTTCTCACTGTGAGAGAAGTGAGCCACCAGATAGAGAGGACACTCAAACAGCCCCATGCAGAGGCCAATATAGAAAGGATAAAATAGCCAGCATCAACTTACCGGCTTTGTAAGAGAGCCTTTATAACTGAATCCACTGCCCCGGTCAAGCCTTCAGATGACTGCAGCTCTAGCCTACATCTGGCTGCAATCTCAG___GTGTTCAGATCAAGGGAAACTACTCTAAGAGGCTACACTTGAGGAACAACAACCAAGGAGCTTCAACTGCATCTGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8460 ENSG00000259723::LINC01524 ENSG00000259723.1::ENSG00000234948.2 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000259723 ENSG00000259723.1 lncRNA - - chr20:53453058-53504314:- chr20:53504109:- chr20:52069597-52120853:- chr20:52120648:- LINC01524 ENSG00000234948.2 lncRNA + - chr20:52192159-52670578:+ chr20:52381585:- chr20:50808698-51287117:+ chr20:50998124:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 71 84 29 334 232 ENST00000558738.1 unknown upstream downstream duplicates(34),inconsistently_clipped(3),low_entropy(1),mismappers(1),mismatches(10),multimappers(1) GGCGGGCGCCCCTCCGCCAGCCTCgCTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAGGTGCCGGATATAATCTCGTGGTGCGCCGTTTTTTAAGCCCGTCCGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|AGTTACCTCAGAATATGGCAGCCGACTTCCCCCAGGGCAAGCAATTCAAGAGAGGATGACAGAAGGCATCCAAGATGAAAATTACATCCCATCTAATCTAATCTTCAAAGTGCCATTCCATCACTTCTGCCATATTCTGTTCATTGGGAGAAAGCCAACAAGTCCAGCCCACATTCACAGGGAGAGTTATGTACAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8461 ARID1A::MEG3 ENSG00000117713.21::ENSG00000214548.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26766566:+ chr1:27019727-27108595:+ chr1:27093057:+ MEG3 ENSG00000214548.18 lncRNA + - chr14:100779410-100861031:+ chr14:100799152:- chr14:101245747-101327368:+ chr14:101265489:- chr1:26767262 chr14:100799829 NA NA chr1:27093753 chr14:101266166 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 30 37 43 312 139 ENST00000430799.7 unknown downstream downstream duplicates(1),mismappers(1),mismatches(4) CATGATCAACCCTCAGGGACCCCCATATTCCATGGGTGGAACCATGGCCAACAATTCTGCAG___GGATGGCAGCCAGCCCAGAGATGATGGGCCTTGGGGATGTAAAGTTAACTCCAGCCACCAAAATGAACAACAAGGCAGATGGGACACCCAAGACAGAATCCAAATCCAAG|ATCTCACTCCATCACCCAGTGATGCAGTGACACAATCTCGGCTCACTGCAACTTCCGTCTCCTGCCTGGGCTCAAGCAATCCTCCCATCTCAGCCTCCCGAGTAGCTGGGAACACAGGCATGTACCACCACACTCGGCTAATTTTTTCTATTTTTAGTAGAGACAGGGTCTCACTATGTTGCCCACGCTGGT MINPQGPPYSMGGTMANNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSK|islhhpvmq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 8462 UACA::ARID1A ENSG00000137831.15::ENSG00000117713.21 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 844 TRUE 1483 TRUE 577 UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70664662:- chr15:70946893-71055897:- chr15:70957001:- ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26767790:+ chr1:27019727-27108595:+ chr1:27094281:+ chr15:70661211,chr15:70661427,chr15:70661436 chr1:26767420,chr1:26767364,chr1:26767354 NA NA chr15:70953550,chr15:70953766,chr15:70953775 chr1:27093911,chr1:27093855,chr1:27093845 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%)|ARID/BRIGHT_DNA_binding_domain(100%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|ARID(100%),BAF250_C(100%) 30 37 36 573 218 ENST00000322954.11 ENST00000430799.7 upstream upstream duplicates(4),mismappers(1),mismatches(5),multimappers(1) CAACAATCACAGAGTTACAAAGAAGAATACAAGAATCTGCTAAACAAATAGAAGCAAAAGATAATAAG___ATAACTGAACTGCTTAATGATGTGGAAAGATTAAAACAGGCACTCAATGGCCTTTCCCAACTCACCTACACAAGTGGGAACCCCACCAAGAGGCAGAGCCAGCTGATTGACACTCTGCAGCACCAAGTGAAATCTCTGGAGCAACAGCTGGCC|AAATCCAGTTCTTCTACTACAACCAATGAGAAGATCACCAAGTTGTATGAGCTGGGTGGTGAGCCTGAGAGGAAGATGTGGGTGGACCGTTATCTGGCCTTCACTGAGGAGAAGGCCATGGGCATGACAAATCTGCCTGCTGTGGGTAGGAAACCTCTGGACCTCTATCGCCTCTATGTGTCTGTGAAGGAGATTGGTGGATTGACTCAG___GTCAACAAGAACAAAAAATGGC TITELQRRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYTSGNPTKRQSQLIDTLQHQVKSLEQQLA|KSSSSTTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation 8463 UACA::ARID1A ENSG00000137831.15::ENSG00000117713.21 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 845 TRUE 1483 TRUE 577 UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70664662:- chr15:70946893-71055897:- chr15:70957001:- ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26771119:+ chr1:27019727-27108595:+ chr1:27097610:+ chr15:70661211,chr15:70661427,chr15:70661436 chr1:26767420,chr1:26767364,chr1:26767354 NA NA chr15:70953550,chr15:70953766,chr15:70953775 chr1:27093911,chr1:27093855,chr1:27093845 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%)|ARID/BRIGHT_DNA_binding_domain(45%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|ARID(3%),BAF250_C(100%) 5 7 11 573 425 ENST00000322954.11 ENST00000430799.7 upstream upstream low_entropy(1),mismatches(2),multimappers(1) GATAAGTCCTTAACAACAATCACAGAGTTACAAAGAAGAATACAAGAATCTGCTAAACAAATAGAAGCAAAAGATAATAAG___ATAACTGAACTGCTTAATGATGTGGAAAGATTAAAACAGGCACTCAATGGCCTTTCCCAACTCACCTACACAAGTGGGAACCCCACCAAGAGGCAGAGCCAGCTGATTGACACTCTGCAGCACCAAGTGAAATCTCTGGAGCAACAGCTGGCC|GTCAACAAGAACAAAAAATGGCGGGAACTTGCAACCAACCTCAATGTGGGCACATCAAGCAGTGCTGCCAGCTCCTTGAAAAAGCAGTATATCCAGTGTCTCTATGCCTTTGAATGCAAGATTGAACGGGGAGAAGACCCTCCCCCAGACATCTTTGCAGCTGCTGATTCCAAGAAGTCCCAGCCCAAGATCCAGCCTCCCTCTCCTG___CGGGATCAGGATCTATGCAGGGGCCCCAGACTCCCCAGTCAACCAGCAGTTCCATGGCAGAAGGAGGAGACTTAAAGCCACCAAC DKSLTTITELQRRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYTSGNPTKRQSQLIDTLQHQVKSLEQQLA|VNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation 8464 UACA::ARID1A ENSG00000137831.15::ENSG00000117713.21 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1483 TRUE 577 UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70676493:- chr15:70946893-71055897:- chr15:70968832:- ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26767790:+ chr1:27019727-27108595:+ chr1:27094281:+ chr15:70661211,chr15:70661427,chr15:70661436 chr1:26767420,chr1:26767364,chr1:26767354 NA NA chr15:70953550,chr15:70953766,chr15:70953775 chr1:27093911,chr1:27093855,chr1:27093845 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Ankyrin_repeats_(3_copies)(100%)|ARID/BRIGHT_DNA_binding_domain(100%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|ARID(100%),BAF250_C(100%) 0 1 0 369 218 ENST00000322954.11 ENST00000430799.7 upstream upstream none GAAAAGCAACATGAAGAAAGCTTAAGGACTATTGAGGCTCTGAAAAATAGATTTAAATATTTTGAG|AAATCCAGTTCTTCTACTACAACCAATGAGAAGA...CAGGcGCCCCAGACTCCCCAGTCAACCAGCAGTTCCATGGCAGAAGGAGGAGACTTAAAGCCACCAACTCCAGCATCCACACCACACAGTCAGATCCCCCC EKQHEESLRTIEALKNRFKYFE|KSSSSTTTNEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation 8465 ZNF431::GSS ENSG00000196705.8::ENSG00000100983.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1484 TRUE 578 ZNF431 ENSG00000196705.8 protein_coding + + chr19:21142024-21196053:+ chr19:21143643:+ chr19:21324827-21378856:+ chr19:21326446:+ GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34951860:- chr20:33516235-33543830:- chr20:33539663:- chr19:21145261 chr20:34955652 NA NA chr19:21328064 chr20:33543455 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Eukaryotic_glutathione_synthase(100%),Eukaryotic_glutathione_synthase__ATP_binding_domain(100%) |GSH_synth_ATP(100%),GSH_synthase(100%) 23 27 28 72 1082 ENST00000311048.11 ENST00000643188.1 downstream downstream duplicates(2),mismatches(2) CCTGAGCTCCAGGTCTCCCCTTCGCTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAACATCTGTGGCCCTGTGACCTGCAG___GACGACTTGAAATATGGAGTGTATCCTCTCAAGGAAGCAAGTGGATGCCCTGGGGCTGAGAGGAATCTTCTAGTTTACTCTTATTTTGAAAAG|GTGTTGGGATGGCCACCAACTGGGGGAGCCTCTTGCAGGATAAACAGCAGCTAGAGGAGCTGGCACGGCAGGCCGTGGACCGGGCCCTGGCTGAGGGAGTATTGCTGAGGACCTCACAGGAGCCCACTTCCTCGGAG___GTGGTGAGCTATGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGA DDLKYGVYPLKEASGCPGAERNLLVYSYFEK|vlgwpptggascrinss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8466 ZNF431::GSS ENSG00000196705.8::ENSG00000100983.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1484 TRUE 578 ZNF431 ENSG00000196705.8 protein_coding + + chr19:21142024-21196053:+ chr19:21142186:+ chr19:21324827-21378856:+ chr19:21324989:+ GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34951860:- chr20:33516235-33543830:- chr20:33539663:- chr19:21145261 chr20:34955652 NA NA chr19:21328064 chr20:33543455 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |Eukaryotic_glutathione_synthase(100%),Eukaryotic_glutathione_synthase__ATP_binding_domain(100%) |GSH_synth_ATP(100%),GSH_synthase(100%) 0 2 6 110 1082 ENST00000600692.5 ENST00000643188.1 downstream downstream none GGCCTTTGTCTCTCGCCGCAGCCTGAGCTCCAGGTCTCCCCTTCGCTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAACATCTGTGGCCCTGTGACCTGCAGGTATTGGGAGACCCACAGCTAAGACACCGGGACCCCCTGAAAGCCTAGAAATG|GTGTTGGGATGGCCACCAACTGGGGGAGCCTCTTGCAGGATAAACAGCAGCTAGAGGAGCTGGCACGGCAGGCCGTGGACCGGGCCCTGGCTGAGGGAGTATTGCTGAGGACCTCACAGGAGCCCACTTCCTCGGAG___GTGGTGAGCTATGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGATGGACTTCAACCTGCTAGTGGATGCTGTCAGCCAGAACGCTGCCTTCCTGGAGCAAACTCTTTCCAG___CACCATCAAACAGGA M|vlgwpptggascrinss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8472 MCM2::ABI3BP ENSG00000073111.14::ENSG00000154175.19 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCM2 ENSG00000073111.14 protein_coding + + chr3:127598410-127622436:+ chr3:127619278:+ chr3:127317253-127341279:+ chr3:127338121:+ ABI3BP ENSG00000154175.19 protein_coding - + chr3:100749156-100993515:- chr3:100891512:+ chr3:100468000-100712359:- chr3:100610356:+ chr3:127619629,chr3:127619627 chr3:100882769,chr3:100882767 NA NA chr3:127338472,chr3:127338470 chr3:100601613,chr3:100601611 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none MCM_AAA-lid_domain(44%),MCM_N-terminal_domain(100%),MCM_OB_domain(100%),MCM_P-loop_domain(100%),Mini-chromosome_maintenance_protein_2(100%)| AAA_3(100%),AAA_5(100%),MCM(100%),MCM2_N(100%),MCM_N(100%),MCM_OB(100%),MCM_lid(7%),Mg_chelatase(100%)| 19 43 7 593 81 ENST00000265056.12 unknown downstream upstream duplicates(3),inconsistently_clipped(1),mismappers(2),mismatches(2) CGTCAGACACCACCCCAGCAACAAGGAGGAGGAGGGGCTGGCCAATGGCAGCGCTGCTGAGCCCGCCATGCCCAACACGTATGGCGTGGAGCCCCTGCCCCAGGAGGTCCTGAAGAAGTACATCATCTACGCCAAGGAGAGGGTCCACCCGAAGCTCAACCAGATGGACCAGGACAAGGTGGCCAAGATGTACAGTGACCTGAGGAAAGAATCTATG|ATAAGAAAACCAAGACTAAAAGCATTTAAGCAACCCATGCAAAGCAACTAAGATGATAATAGAGCAGAGTTTTGAACTCGGGTAAGTCAGTGTGACCAGAATTTGTATCTTCAACATCCATGCTATGATGCCATCCCTGGAGATGCTCACTGTGGACTCTGGATGGGAGATGTTGCAAAGAAG VRHHPSNKEEEGLANGSAAEPAMPNTYGVEPLPQEVLKKYIIYAKERVHPKLNQMDQDKVAKMYSDLRKESM|irkprlkafkqpmqsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8473 WDFY2::SERPINE3 ENSG00000139668.9::ENSG00000253309.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 847 TRUE 1486 TRUE 579 WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51660663:+ chr13:52158591-52341845:+ chr13:52234799:+ SERPINE3 ENSG00000253309.7 protein_coding + + chr13:51335773-51364735:+ chr13:51355043:+ chr13:51909909-51938871:+ chr13:51929179:+ chr13:51674460,chr13:51674455 chr13:51348720,chr13:51348712 NA NA chr13:52248596,chr13:52248591 chr13:51922856,chr13:51922848 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Serpin_(serine_protease_inhibitor)(29%) |Serpin(39%) 23 29 16 158 55 ENST00000298125.7 ENST00000524365.5 downstream upstream duplicates(1),mismatches(3) TCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAG___GACAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTT|GTTTAGGATCCAAAATCAATTCAACTTAAAAAGCATTTTAAATTCTTGGGGAGTCACCGATCTTTTTGATCCACTCAAAGCTAACTTGAAAGGAATTTCAG___GCCAAGATGGCTTTTATGTTTCTGAAGCAATCCACAAGGCCAAGATTGAAGTTTTGGAGGAAGGCAC SQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSVYHAMP|clgskinst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8474 WDFY2::SERPINE3 ENSG00000139668.9::ENSG00000253309.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 848 TRUE 1486 TRUE 579 WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51660663:+ chr13:52158591-52341845:+ chr13:52234799:+ SERPINE3 ENSG00000253309.7 protein_coding + + chr13:51335773-51364735:+ chr13:51361278:+ chr13:51909909-51938871:+ chr13:51935414:+ chr13:51674460,chr13:51674455 chr13:51348720,chr13:51348712 NA NA chr13:52248596,chr13:52248591 chr13:51922856,chr13:51922848 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Serpin_(serine_protease_inhibitor)(20%) |Serpin(12%) 16 28 6 158 96 ENST00000298125.7 ENST00000524365.5 downstream upstream duplicates(1),mismatches(1) CCGCAAGCCGATCCTGCTGCAGCGGATGGAGGGGTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAG___GACAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTT|GCCAAGATGGCTTTTATGTTTCTGAAGCAATCCACAAGGCCAAGATTGAAGTTTTGGAGGAAGGCACCAAGGCATCTGGAGCCACAG___CTCTGTTGTTATTGAAAAGGTCTCGGATTCCTATTTTTAAAGCAGATCGGCCATTCATCTATTTCCTGAGAGAACCTAACACAG RKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSVYHAMP|cQDGFYVSEAIHKAKIEVLEEGTKASGATALLLLKRSRIPIFKADRPFIYFLREPNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8475 WDFY2::SERPINE3 ENSG00000139668.9::ENSG00000253309.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1486 TRUE 579 WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51584824:+ chr13:52158591-52341845:+ chr13:52158960:+ SERPINE3 ENSG00000253309.7 protein_coding + + chr13:51335773-51364735:+ chr13:51361278:+ chr13:51909909-51938871:+ chr13:51935414:+ chr13:51674460,chr13:51674455 chr13:51348720,chr13:51348712 NA NA chr13:52248596,chr13:52248591 chr13:51922856,chr13:51922848 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Serpin_(serine_protease_inhibitor)(20%) |Serpin(12%) 0 1 3 160 96 ENST00000298125.7 ENST00000524365.5 downstream upstream none CCCGCGGCGCGGTTGGCGGCGGCGCCCCAGGCGCGCCCCCTCCTCCGATGGCGGCGGAGATCCAGCCCAAGCCTCTGACCCGCAAGCCGATCCTGCTGCAGCGGATGGAGGGGTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAG|GCCAAGATGGCTTTTATGTTTCTGAAGCAATCCACAAGGCCAAGATTGAAGTTTTGGAGGAAGGCACCAAGGCATCTGGAGCCACAG___CTCTGTTGTTATTGAAAAGGTCTCGGATTCCTATTTTTAAAGCAGATCGGCC...GTTTGTCTTCAGTATTGGGAGAGTTTCAAATCCCCTAGACTAAATGCATGTTCTCCACTTTCATCAATGCTTTTCTTCATAAAGTTATAATTTCATTTTGC MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDr|prwllcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8476 SHROOM2::MCM2 ENSG00000146950.13::ENSG00000073111.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SHROOM2 ENSG00000146950.13 protein_coding + + chrX:9786429-9949443:+ chrX:9896698:+ chrX:9754469-9917483:+ chrX:9864738:+ MCM2 ENSG00000073111.14 protein_coding + - chr3:127598410-127622436:+ chr3:127599497:- chr3:127317253-127341279:+ chr3:127318340:- chrX:9897243 chr3:127613058 NA NA chrX:9865283 chr3:127331901 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none Apx/Shroom_domain_ASD1(100%),PDZ_domain(100%)| ASD1(100%),PDZ(100%)| 23 24 20 127 756 ENST00000380913.8 unknown downstream downstream inconsistently_clipped(1),mismatches(4) TCGCGCACCACCTCCCTTGGGGACAGCCTCAACGCTCACAGCGCAGCGGAGAAGGCAGGGACTTCAGACCTGCCGCGGAGGCTCGGCACCTTTGCAGAGTATCAGGCCTCTTGGAAGGAACAGAGGAAACCTCTGGAGGCCAGGAGCTCTGGGCGCTGCCACTCAGCGGATGACATCCTGGATGTGAGCCTGGACCCACAGGAGAGGCCGCAGCACGTTCATGGGAGGTCCCGGTCTTCACCGTCCACAGACCACTACAAGCAG|GGGCCCCTCTGTGCCTAGGAGCCCCTCGGACTCATCCTCAAATGGTGGAAGGTCACGGCCAGGGCTGGAGGTGAGGGCATCAGTACGCtGGGAGCTTCGGCCAGGGCTGGAGGTGAGAGGATCATTGCCTCGCCGACGCTGGGCCGGGCTGGATGCCATGGTGAAGGATTCCGATGATTCCTGCAAGAGAAGGTGCGGTTGTCAGAAACCTAGGAAGCTGGTGAGGCATGATACAGCTTCCTTTTTACCATCAGG SRTTSLGDSLNAHSAAEKAGTSDLPRRLGTFAEYQASWKEQRKPLEARSSGRCHSADDILDVSLDPQERPQHVHGRSRSSPSTDHYKQ|gplca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8477 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 849 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58363609:+ chr10:60094739-60130511:+ chr10:60123369:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Vesicle_transport_v-SNARE_protein_N-terminus(97%)|Ubiquitin-conjugating_enzyme(73%) V-SNARE(21%)|UQ_con(15%) 19 14 13 1317 435 ENST00000705995.1 ENST00000615793.1 downstream upstream duplicates(2) GAAAAGAAACAGATGGTTGCAAATGTGGAGAAACAGCTTGAAGAAGCGAAAGAACTG___CTTGAACAGATGGATTTGGAAGTCCGAGAGATACCACCCCAAAGTCGAGGGATGTACAGCAACAGAATGAGAAGCTACAAACAAGAAATGGGAAAACTCGAAACAGATTTT|CCTGATAGCGCATATCAAGGTGGAGTCTTCTTTCTCACTGTACATTTTCCGACAGATTATCCTTTTAAACCACCAAAG___ATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGTCTCGATATTCTGAGGTCACAATGGTCACCAG EKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF|PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8478 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 850 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58364771:+ chr10:60094739-60130511:+ chr10:60124531:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Vesicle_transport_v-SNARE_protein_N-terminus(97%)|Ubiquitin-conjugating_enzyme(54%) V-SNARE(21%)|UQ_con(11%) 4 9 9 1317 404 ENST00000705995.1 ENST00000615793.1 downstream upstream duplicates(4),inconsistently_clipped(1) ACGACTCCCGCCTG___ATGAAAAGAAACAGATGGTTGCAAATGTGGAGAAACAGCTTGAAGAAGCGAAAGAACTG___CTTGAACAGATGGATTTGGAAGTCCGAGAGATACCACCCCAAAGTCGAGGGATGTACAGCAACAGAATGAGAAGCTACAAACAAGAAATGGGAAAACTCGAAACAGATTTT|ATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGTCTCGATATTCTGAGGTCACAATGGTCACCAGCTCTGACTGTATCAAAAG___TTTTATTGTCCATATGTTCTCTACTTTGTGATCCTAATCCAGAT RLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF|IAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8479 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 851 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58367923:+ chr10:60094739-60130511:+ chr10:60127683:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Vesicle_transport_v-SNARE_protein_N-terminus(97%)|Ubiquitin-conjugating_enzyme(28%) V-SNARE(21%)|UQ_con(2%) 6 2 5 1317 380 ENST00000705995.1 ENST00000615793.1 downstream upstream none CGTTCTGCTCTCGGGGGCACCTTCCGGGGTTCCTAAGCCGCGGGGCCCCTCGCTGCCCCTCGAGGCCCTTTCCCTGACCTAGGCTTTGGCCTGGGCTACTCG...CCGCCATGTCGTCCGACTTCGAAGGTTACGAGCAGGACTTCGCGGTGCTCACTGCAGAGATCACCAGCAAGATTGCGAGGGTCCCACGACTCCCGCCTG___ATGAAAAGAAACAGATGGTTGCAAATGTGGAGAAACAGCTTGAAGAAGCGAAAGAACTG___CTTGAACAGATGGATTTGGAAGTCCGAGAGATACCACCCCAAAGTCGAGGGATGTACAGCAACAGAATGAGAAGCTACAAACAAGAAATGGGAAAACTCGAAACAGATTTT|TTTTATTGTCCATATGTTCTCTACTTTGTGATCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAAATCTATAAATCAGACAAAGAAAA___ATACAACAGACATGCAAGAGAATGGACTCAGAAAT MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF|fycpyvlyfviliqmtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8480 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58368720:+ chr10:60094739-60130511:+ chr10:60128480:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Vesicle_transport_v-SNARE_protein_N-terminus(97%)|Ubiquitin-conjugating_enzyme(6%) V-SNARE(21%)|UQ_con(0%) 1 1 1 1317 359 ENST00000705995.1 ENST00000615793.1 downstream upstream none CAAATGTGGAGAAACAGCTTGAAGAAGCGAAAGAACTG___CTTGAACAGATGGATTTGGAAGTCCGAGAGATACCACCCCAAAGTCGAGGGATGTACAGCAACAGAATGAGAAGCTACAAACAAGAAATGGGAAAACTCGAAACAGATTTT|ATACAACAGACATGCAAGAGAATGGACTCAGAAATATGCAATGTAAAAATCAAAAACATTTTCATATATACCAGAGTACTGTAAAATCTAGGTTTTTT[t]TCAACATTAGCAGTAAATTGAGCACTGTTTACTGTTTCATTGTACCATGAAACCATTTGATTTTTACCCATTTTAAATGTGTTTCTGAAGCAAGACAAAACAAACTTCCAAAAATACCCTTAAGACTGTGATGAG NVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF|iqqtckrmdseicnvkiknifiytrvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 8482 PACSIN2::MCAT ENSG00000100266.19::ENSG00000100294.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 852 TRUE 1488 TRUE 581 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- MCAT ENSG00000100294.13 protein_coding - - chr22:43132209-43143398:- chr22:43133486:- chr22:43528215-43539404:- chr22:43529492:- chr22:42984939,chr22:42984945 chr22:43140513,chr22:43140516 NA NA chr22:43380945,chr22:43380951 chr22:43536519,chr22:43536522 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Acyl_transferase_domain(34%) |Acyl_transf_1(2%) 13 19 10 488 148 ENST00000263246.8 ENST00000290429.11 upstream downstream low_entropy(1),mismatches(5) GTCTGGGCAGGGCTGGGCAGTGCTGCCGGAGCAAAAGCGGTAGCGGGAGCCCGGCCGGAGCTGGGTCTGGAGACGCCGTGGCAGCCTGAACGGAGTGTGCGACGGATTGGGAG|GCTCTACGGTTTCTCCAGAAGAATTCCTCTAAGTTTCATTTCAGACGCACCAGGATGTTGCCGGTTAGTGGCGCATTCCACACCCGCCTCATGGAGCCAGCCGTGGAGCCCCTGACGCAAGCTTTAAAGGCAGTCGACATTAAGAAGCCTCTGGTTTCTGTCTACTCCAACGTCCACGCGCATAGATACAGGCATCCCGGGCACATCCACAAGCTGCTGGCCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 43411027 TRUE 43537255 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8483 PACSIN2::MCAT ENSG00000100266.19::ENSG00000100294.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 853 TRUE 1488 TRUE 581 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- MCAT ENSG00000100294.13 protein_coding - - chr22:43132209-43143398:- chr22:43137298:- chr22:43528215-43539404:- chr22:43533304:- chr22:42984939,chr22:42984945 chr22:43140513,chr22:43140516 NA NA chr22:43380945,chr22:43380951 chr22:43536519,chr22:43536522 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Acyl_transferase_domain(60%) |Acyl_transf_1(41%) 4 18 15 488 150 ENST00000263246.8 ENST00000290429.11 upstream downstream duplicates(1),mismatches(1) GCGGCAGAAGCGGCCGCAGGGGTCTGGGCAGGGCTGGGCAGTGCTGCCGGAGCAAAAGCGGTAGCGGGAGCCCGGCCGGAGCTGGGTCTGGAGACGCCGTGGCAGCCTGAACGGAGTGTGCGACGGATTGGGAG|GTTTGTATGCAGTGAAAATCCGAGCTGAGGCCATGCAGGAAGCTTCAGAAGCTGTCCCCAGTGGGATGCTGTCTGTCCTCGGCCAGCCTCAGTCCAAGTTCAACTTCGCCTGTTTGGAAGCCCGGGAACACTGCAAGTCTTTAGGCATAGAGAACCCCGTATGTGAAGTGTCCAACTACCTCTTTCCAGATTGCAGGGTGATTTCAGGACACCAAGAG___GCTCTACGGTTTCTCCAGAAGAATTCCTCTAAGTTTCATTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 43411027 TRUE 43537255 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8485 PSEN1::RBM25 ENSG00000080815.20::ENSG00000119707.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 855 TRUE 1489 TRUE 582 PSEN1 ENSG00000080815.20 protein_coding + + chr14:73136418-73223691:+ chr14:73136583:+ chr14:73603126-73690399:+ chr14:73603291:+ RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73076319:+ chr14:73525240-73590607:+ chr14:73543027:+ chr14:73138723,chr14:73138719,chr14:73138720 chr14:73074283,chr14:73074276,chr14:73074280 NA NA chr14:73605431,chr14:73605427,chr14:73605428 chr14:73540991,chr14:73540984,chr14:73540988 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |PWI_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |PWI(100%),RRM_1(100%) 8 23 10 338 720 ENST00000700266.1 ENST00000261973.12 downstream upstream duplicates(1),inconsistently_clipped(1),low_entropy(2),mismatches(6) GGGCGGGGCCTGGGACAGGCAGCTCCGGGGTCCGCGGTTTCACATCGGAAACAAAACAGCGGCTGGTCTGGAAGGAACCTGAGCTACGAGCCGCGGCGGCAGCGGGGCGGCGGGGAAGCGTAT|GGACCCCAATGATTCCTGTACCAATGAGCATTATGGCTCCTGCTCCAACT___GTCTTAGTACCCACTGTGTCTATGGTTGGAAAGCATTTGGGCGCAAGAAAGGATCATCCAGGCTTAAAGGCTAAAGAAAATGATGAAAATTGTGGTCCTACTACCACTGTTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8486 PSEN1::RBM25 ENSG00000080815.20::ENSG00000119707.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1489 TRUE 582 PSEN1 ENSG00000080815.20 protein_coding + + chr14:73136418-73223691:+ chr14:73137223:+ chr14:73603126-73690399:+ chr14:73603931:+ RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73076319:+ chr14:73525240-73590607:+ chr14:73543027:+ chr14:73138723,chr14:73138719,chr14:73138720 chr14:73074283,chr14:73074276,chr14:73074280 NA NA chr14:73605431,chr14:73605427,chr14:73605428 chr14:73540991,chr14:73540984,chr14:73540988 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |PWI_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |PWI(100%),RRM_1(100%) 0 1 11 42 720 ENST00000700375.1 ENST00000261973.12 downstream upstream mismatches(3) GGGTGAGAGAATTGAGGTGACTTTTCCATAATTCAG|GGACCCCAATGATTCCTGTACCAATGAGCATTATGGCTCCTGCTCCAACT___GTCTTAGTACCCACTGTGTCTATGGTTGGAAAGCATTTGGGCGCAAGAAAGGATCATCCAGGCTTAAAGGCTAAAGAAAATGATGAAAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8487 PSEN1::RBM25 ENSG00000080815.20::ENSG00000119707.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1489 TRUE 582 PSEN1 ENSG00000080815.20 protein_coding + + chr14:73136418-73223691:+ chr14:73136579:+ chr14:73603126-73690399:+ chr14:73603287:+ RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73076319:+ chr14:73525240-73590607:+ chr14:73543027:+ chr14:73138723,chr14:73138719,chr14:73138720 chr14:73074283,chr14:73074276,chr14:73074280 NA NA chr14:73605431,chr14:73605427,chr14:73605428 chr14:73540991,chr14:73540984,chr14:73540988 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |PWI_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |PWI(100%),RRM_1(100%) 0 1 8 351 720 ENST00000700268.1 ENST00000261973.12 downstream upstream low_entropy(1),mismatches(4) TCTCGGGCGGGGCCTGGGACAGGCAGCTCCGGGGTCCGCGGTTTCACATCGGAAACAAAACAGCGGCTGGTCTGGAAGGAACCTGAGCTACGAGCCGCGGCGGCAGCGGGGCGGCGGGGAAGC|GGACCCCAATGATTCCTGTACCAATGAGCATTATGGCTCCTGCTCCAACT___GTCTTAGTACCCACTGTGTCTATGGTTGGAAAGCATTTGGGCGCAAGAAAGGATCATCCAGGCTTAAAGGCTAAAGAAAATGATGAAAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8488 ZNF257::ENSG00000268278 ENSG00000197134.13::ENSG00000268278.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF257 ENSG00000197134.13 protein_coding + + chr19:22052430-22091480:+ chr19:22052635:+ chr19:22235232-22274282:+ chr19:22235437:+ ENSG00000268278 ENSG00000268278.1 unprocessed_pseudogene + - chr19:21637974-21656300:+ chr19:21640621:- chr19:21820776-21839102:+ chr19:21823423:- chr19:22062459,chr19:22062460 chr19:21647333,chr19:21647332 NA NA chr19:22245261,chr19:22245262 chr19:21830135,chr19:21830134 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 23 6 11 204 15 ENST00000594947.6 unknown downstream downstream mismatches(1) AGCCCGAGCTGCAGGTCTCGTCTTCCCTGGTCTGTGTCCTCTTCTCCTAGGGGCCCAGCCTCTGTGGCCCTGTGACCTGCAGGTATTGGGAGATCCCCAGCTAAGACGCCAGGTCCTCCTGGAAGCCTAGAAATG|AGCATCACTTGAACCcGGGAGGCGGAGGTTGCTGTGAGCCAAGATCATGACACTGCACTCCAGCTTGGGCAACAAGAGCAAAATGCTGTCTCAAAAAAAAAACAAAAAAACAAAACAAAACAAAAAAAACAACTTGAAGAAGTGTTTGCTCTATCAAATTCACA M|sit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8489 DCAF10::CENPP ENSG00000122741.16::ENSG00000188312.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 856 TRUE 1490 TRUE 583 DCAF10 ENSG00000122741.16 protein_coding + + chr9:37800554-37867666:+ chr9:37819401:+ chr9:37800551-37867663:+ chr9:37819398:+ CENPP ENSG00000188312.15 protein_coding + + chr9:92325953-92620529:+ chr9:92379763:+ chr9:95088235-95382811:+ chr9:95142045:+ chr9:37833704 chr9:92352619 NA NA chr9:37833701 chr9:95114901 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none WD_domain__G-beta_repeat(22%)|CENP-A-nucleosome_distal_(CAD)_centromere_subunit__CENP-P(70%) WD40(0%)|CENP-P(84%),LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%),VWC(100%) 10 11 14 111 97 ENST00000377724.8 ENST00000375587.8 downstream upstream low_entropy(2),mismatches(3) ACCCGGCGCGGGACAATTTTCGCACCATGACTAGCCTCTACGGTTCCATCCACCCCGCGGACTCGGTGTACCTCAGCACCCGCACCCACGGCGCCGTCTTCAACCTCGAGTACTCGCCCGACGG___GTCAGTGCTGACAGTTGCTTGTGAACAAACTGAAGTTCTGCTTTTTGACCCTATATCTTCAAAGCACATAAAAACACTTTCTGAAGCTCATGAAGACTGTGTAAATAATATCAG|AGCAGAAGAGAGAAAAGATCTGTTCATGTTTTTCCGAAGCCTGCATTTTTTTGTGGAGTGGTTTGAATATCGTAAGCGCACGTTTAAACATCTCAAG___GAAAAGTACCCAGATGCCGTGTACCTCTCGGAGGGGCCCTCCTCCTGCTCCATGGGGATCCGCAGCGCCAGCCGGCCAGG___GTTTGAATTAG PARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIr|AEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8490 DCAF10::CENPP ENSG00000122741.16::ENSG00000188312.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1490 TRUE 583 DCAF10 ENSG00000122741.16 protein_coding + + chr9:37800554-37867666:+ chr9:37819401:+ chr9:37800551-37867663:+ chr9:37819398:+ CENPP ENSG00000188312.15 protein_coding + + chr9:92325953-92620529:+ chr9:92611314:+ chr9:95088235-95382811:+ chr9:95373596:+ chr9:37833704 chr9:92352619 NA NA chr9:37833701 chr9:95114901 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none WD_domain__G-beta_repeat(22%)|CENP-A-nucleosome_distal_(CAD)_centromere_subunit__CENP-P(50%) WD40(0%)|CENP-P(0%) 0 0 0 111 157 ENST00000242323.8 ENST00000375587.8 downstream upstream mismatches(1) GTTGCTTGTGAACAAACTGAAGTTCTGCTTTTTGACCCTATATCTTCAAAGCACATAAAAACACTTTCTGAAGCTCATGAAGACTGTGTAAATAATATCAG|GAAAAGTACCCAGATGCCG VACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIr|kstqm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8494 GBF1::WBP1L ENSG00000107862.7::ENSG00000166272.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 859 TRUE 1491 TRUE 584 GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102358729:+ chr10:104005128-104142656:+ chr10:104118486:+ WBP1L ENSG00000166272.18 protein_coding + + chr10:102743948-102834516:+ chr10:102797993:+ chr10:104503705-104594273:+ chr10:104557750:+ chr10:102361156,chr10:102361157 chr10:102766640,chr10:102766638 NA NA chr10:104120913,chr10:104120914 chr10:104526397,chr10:104526395 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |WW_domain-binding_protein_1(100%) DCB(100%)|WBP-1(100%) 10 13 7 204 222 ENST00000676513.1 ENST00000647664.1 downstream upstream duplicates(1) CCTTATCATCTAACCTCACTG___GTGGCATGCCCTTCATTGATGTGCCCACTCCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCAGCAGTGGTCAGTCCCTCTACAGACAGTGGCCTGGAATTCTCCTCCCAAACCACTTCCAAGGAAGACCTTACTGATCTAGAGCAACCTGGCTCTCCAGGGTACAGCACAGCTACAGAGCCTGGAAGCAGTGAGCTAGGTGTTCCCGAGCAGCCTGACCTCCAG|GATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGT___GGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAG LSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQTTSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQ|DKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8496 GBF1::WBP1L ENSG00000107862.7::ENSG00000166272.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1491 TRUE 584 GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102360395:+ chr10:104005128-104142656:+ chr10:104120152:+ WBP1L ENSG00000166272.18 protein_coding + + chr10:102743948-102834516:+ chr10:102797993:+ chr10:104503705-104594273:+ chr10:104557750:+ chr10:102361156,chr10:102361157 chr10:102766640,chr10:102766638 NA NA chr10:104120913,chr10:104120914 chr10:104526397,chr10:104526395 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(41%)|WW_domain-binding_protein_1(100%) DCB(100%),Sec7(0%),Sec7_N(10%)|WBP-1(100%) 4 0 12 171 222 ENST00000676513.1 ENST00000647664.1 downstream upstream duplicates(1) AGAAG___GCACAGCTTTGGTCCCCTATGGTCTTCCCTGCATCCGCGAGCTCTTCCGCTTCCTCATCTCCCTCACCAATCCACACGACCGCCATAACTCAGAGGTTATGATTCACATGGGACTGCATTTGCTGACAGTGGCCCTTGAGTCAGCCCCTGTAGCCCAGTGCCAGACCCTCTTGGGCCTCATCAAGGATGAGATGTGCCGTCACTTATTCCAG|GATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGT___GGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCC EGTALVPYGLPCIRELFRFLISLTNPHDRHNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQ|DKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8497 DIP2B::COQ5 ENSG00000066084.13::ENSG00000110871.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIP2B ENSG00000066084.13 protein_coding + - chr12:50504985-50748657:+ chr12:50557806:- chr12:50898768-51142440:+ chr12:50951589:- COQ5 ENSG00000110871.15 protein_coding - - chr12:120503279-120534434:- chr12:120510125:- chr12:120941082-120972237:- chr12:120947928:- chr12:50557629,chr12:50557632,chr12:50557631 chr12:120515149,chr12:120515149,chr12:120515306 NA NA chr12:50951412,chr12:50951415,chr12:50951414 chr12:120952952,chr12:120952952,chr12:120953109 NA NA antisense sense unknown intron intron duplication/3'-3' high none |ubiE/COQ5_methyltransferase_family(50%) |Methyltransf_11(44%),Methyltransf_12(29%),Methyltransf_23(34%),Methyltransf_25(44%),Methyltransf_31(30%),Ubie_methyltran(25%) 10 8 10 20 676 unknown ENST00000288532.11 upstream downstream duplicates(1),mismatches(2) GAGATGGGGTCTCTCTGTTACATAGGCTAATCTCAAACTCCTGGGCTCAAGCGATCCTCTCACCTCAGCCTCCCAAAGTGCTGAGATTATGGGTGGGAGCCACCACGCCTGGCATTTTTCCTTGTTCTGGAAGAAATGATTCAACAATCAGTAGTGCCAATCATATGGCAGAA|AGGACTTGCATGGGTATTAGGAGATGCTGAAGAACTGCCCTTTGATGATGACAAGTTTGATATTTACACCATTGCCTTTGGGATCCGGAATGTCACACACATTGATCAG___GCACTCCAGGAAGCTCATCGGGTGCTGAAACCAGGAGGACGGTTTCTCTGTCTGGAATTTAGCCAAGTGAACAATCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8499 ZNF365::GPR158-AS1 ENSG00000138311.18::ENSG00000233642.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 861 FALSE NA FALSE NA ZNF365 ENSG00000138311.18 protein_coding + + chr10:62374192-62480288:+ chr10:62374458:+ chr10:64133951-64240047:+ chr10:64134217:+ GPR158-AS1 ENSG00000233642.1 lncRNA - - chr10:25158072-25176276:- chr10:25159903:- chr10:25447001-25465205:- chr10:25448832:- chr10:62375988,chr10:62375990,chr10:62375987,chr10:62375987 chr10:25169339,chr10:25169337,chr10:25169339,chr10:25169340 NA NA chr10:64135747,chr10:64135749,chr10:64135746,chr10:64135746 chr10:25458268,chr10:25458266,chr10:25458268,chr10:25458269 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 6 13 7 28 40 ENST00000395255.7 ENST00000449643.1 downstream downstream duplicates(1),low_entropy(1),mismatches(2) CGGCGGGGAGTGGGAGCCGGCCCGGCTCAGTCTGATTTACGGCTCTGCTGAAAACCGCTTCGCTCCCGCAGCATCAGCACCGGAGGCGGCGGCT???GCAGCAGCAGCAACAAGTCGG|CACTATTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTGGCTGACCCACTTTCCAGATGGAGCCAACATCATCCTCTGTCTCATCCATAAATCATGAACAGAAGGCCCAGGAAATGAGAAGCGGAGTCCCCACTGGGAGAGTAGCAGAGCTTCCAGCATGAGGCCCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8500 ENSG00000285837::GPR158-AS1 ENSG00000285837.1::ENSG00000233642.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285837 ENSG00000285837.1 protein_coding + + chr10:62374192-62672011:+ chr10:62374458:+ chr10:64133951-64431771:+ chr10:64134217:+ GPR158-AS1 ENSG00000233642.1 lncRNA - - chr10:25158072-25176276:- chr10:25159903:- chr10:25447001-25465205:- chr10:25448832:- chr10:62375988,chr10:62375990,chr10:62375987,chr10:62375987 chr10:25169339,chr10:25169337,chr10:25169339,chr10:25169340 NA NA chr10:64135747,chr10:64135749,chr10:64135746,chr10:64135746 chr10:25458268,chr10:25458266,chr10:25458268,chr10:25458269 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 6 13 7 28 40 ENST00000647733.1 ENST00000449643.1 downstream downstream duplicates(1),low_entropy(1),mismatches(2) CGGCGGGGAGTGGGAGCCGGCCCGGCTCAGTCTGATTTACGGCTCTGCTGAAAACCGCTTCGCTCCCGCAGCATCAGCACCGGAGGCGGCGGCT???GCAGCAGCAGCAACAAGTCGG|CACTATTCCTAGGCCTCCAAGGTGTCTCCTCAAAGACTGGCTGACCCACTTTCCAGATGGAGCCAACATCATCCTCTGTCTCATCCATAAATCATGAACAGAAGGCCCAGGAAATGAGAAGCGGAGTCCCCACTGGGAGAGTAGCAGAGCTTCCAGCATGAGGCCCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8504 ZFAND3::BTBD9 ENSG00000156639.12::ENSG00000183826.19 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:37929999:+ chr6:37787503-38122400:+ chr6:37897775:+ BTBD9 ENSG00000183826.19 protein_coding - + chr6:38168451-38640148:- chr6:38396436:+ chr6:38136227-38607924:- chr6:38364212:+ chr6:38058108,chr6:38058101,chr6:38058093 chr6:38361662,chr6:38361394,chr6:38361644 NA NA chr6:38025884,chr6:38025877,chr6:38025869 chr6:38329438,chr6:38329170,chr6:38329420 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none A20-like_zinc_finger(100%)| zf-A20(100%)| 6 10 9 225 37 ENST00000287218.9 unknown downstream upstream duplicates(1),mismatches(1) CTCCGCCGCCGCCGAGCACCATGGGAGACGCTGGGAGCGAGCGCAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG___GTCCAGCAAGACTATGAATCTCTGTTCCAAATGCTTTGCTG|TTGCCAAGCGGTTGGAGGAAGTCAATGGGAAACAAAAAATTAGGGCGAAGCCGTGTCTGAACAACCTGCTGTGTGTCTTGCCATGACCAGCAAG___GTGAAGAGGAGCCCTGAGAAGTTTcAGTAGAGGAGTG...GATTTTTACAACTTTCATCAAGAT MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFA|vakrleevngkqkirakpclnnllcvlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8505 BTBD9::ZFAND3 ENSG00000183826.19::ENSG00000156639.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BTBD9 ENSG00000183826.19 protein_coding - + chr6:38168451-38640148:- chr6:38217896:+ chr6:38136227-38607924:- chr6:38185672:+ ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:38116572:+ chr6:37787503-38122400:+ chr6:38084348:+ NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' low none |AN1-like_Zinc_finger(100%) |zf-AN1(100%) 0 1 0 0 387 unknown ENST00000287218.9 downstream upstream none GGCTGGCAGAGGCTGCTGTAAACTATCCCTATGAAG|ATTCACAGTCTGAGAATGAGGCTTCACCAGTAAAACGGCCACGACTACTTtAGAATACGGAACGGTCCGAGGAAACCAGTCGATCTAAACAGAAGAGTCGACGTCGGTGCTTCCAGTGCCAAACCAAACTGGAGCTGGTGCAGCAGGAATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8506 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 862 TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74718832:- chr11:74407474-74442471:- chr11:74429877:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |von_Willebrand_factor_type_C_domain(100%) |CHRDL_1_2_C(100%),VWC(100%) 7 6 12 52 81 ENST00000264658.11 ENST00000376332.8 upstream downstream mismatches(1) CCGAGCTAGCGACGAGCAGTCGTTGCGGCCGCCGGCGCCGCGGGAGGTGGTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|GCCCAGACATGTTCTGCCTTTTCCATGGGAAGAGATACTCCCCCGGCGAGAGCTGGCACCCCTACTTGGAGCCACAAGGCCTGATGTACTGCCTGCGCTGTACCTGCTCAGAG___GGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTG...___AACCTCACACTCCCTCTGGACTCCGGG MRRDVNGVTKSRFE|aqtcsafsmgrdtpparagtptwshka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8507 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 863 TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74718832:- chr11:74407474-74442471:- chr11:74429877:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |von_Willebrand_factor_type_C_domain(100%) |CHRDL_1_2_C(100%),VWC(100%) 3 7 1 39 81 ENST00000577399.5 ENST00000376332.8 upstream downstream mismatches(1) GGCGGGGGAGGCGGCGGCGGCGGCAACCGCGGAGGCGCGGCGGCAGCCGCACTGCCCCAATCTAGACACATCCAGAAGAGGAGGAAAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|GCCCAGACATGTTCTGCCTTTTCCATGGGAAGAGATACTCCCCCGGCGAGAGCTGGCACCCCTACTTGGAGCCACAAGGCCTGATGTACTGCCTGCGCTGTACCTGCTCAGAG___GGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTGTGG___AACCTCACACTCCCTCTGGACTCCGGGCCCCACCAAAGTCCTGC...TCTTgAGgGCCCATGAGCTGccCCCCgCCCGCCTGCCCAACCAGTGTGTCCTCTGCAGCTGCACA___GAGGGCCAGATCTACTGCGGCCTCACAACCTGCCC MAPSRDRLLHFGFKAT|aqtcsafsmgrdtpparagtptwshka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8508 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74713479:- chr11:74407474-74442471:- chr11:74424524:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |von_Willebrand_factor_type_C_domain(82%) |CHRDL_1_2_C(100%),VWC(35%) 2 0 7 52 139 ENST00000583610.5 ENST00000376332.8 upstream downstream mismatches(1) TTGAGGCTGAGGAGAGAGCCGAGCTAGCGACGAGCAGTCGTTGCGGCCGCCGGCGCCGCGGGAGGTGGTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|GGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTGTGG___AACCTCACACTCCCTCTGGACTCCGGGCCCCACCAAAGTCCTGCCAGCACAACGGGAC MRRDVNGVTKSRFE|GAHVSCYRLHCPPVHCPQPVTEPQQCCPKCVEPHTPSGLRAPPKSCQHNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8509 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74713479:- chr11:74407474-74442471:- chr11:74424524:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |von_Willebrand_factor_type_C_domain(82%) |CHRDL_1_2_C(100%),VWC(35%) 2 3 1 39 139 ENST00000577399.5 ENST00000376332.8 upstream downstream mismatches(1) GGCGGGGGAGGCGGCGGCGGCGGCAACCGCGGAGGCGCGGCGGCAGCCGCACTGCCCCAATCTAGACACATCCAGAAGAGGAGGAAAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|GGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTGTG...CCcCCAAAGcCCTGCCAGCACAACGGGACCATtTACCAACACGGAGAGATCTTCAGTGCCCATGAGCTGTTCCCCTCCCGCCTGCCCAACCAGTGTGTCCTCTGCAGCgGCACA___GAGcGCCAGATCTACTcCGGCCTCACAACCTGCCCCGAACCAGGCTGCCCAGCACCCCTCCCGCTGCCAGAC MAPSRDRLLHFGFKAT|GAHVSCYRLHCPPVHCPQPVTEPQQCCPKC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8510 ZNF429::UPF1 ENSG00000197013.11::ENSG00000005007.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF429 ENSG00000197013.11 protein_coding + + chr19:21496682-21556270:+ chr19:21498349:+ chr19:21679484-21739072:+ chr19:21681151:+ UPF1 ENSG00000005007.14 protein_coding + + chr19:18831959-18868230:+ chr19:18845980:+ chr19:18942768-18979039:+ chr19:18956789:+ chr19:21505149,chr19:21505145 chr19:18843298,chr19:18843291 NA NA chr19:21687951,chr19:21687947 chr19:18954107,chr19:18954100 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |AAA_domain(100%),RNA_helicase_(UPF2_interacting_domain)(100%),RNA_helicase_UPF1__1B_domain(100%),Type_III_restriction_enzyme__res_subunit(100%) |AAA_11(100%),AAA_12(100%),AAA_19(100%),AAA_30(100%),ResIII(100%),UPF1_1B_dom(100%),UPF1_Zn_bind(100%) 15 3 7 65 475 ENST00000594022.1 ENST00000262803.10 downstream upstream duplicates(2),mismatches(4),multimappers(1) GTGTTATGACTCTCGTCTTTTCACTGGAACCTGCCAAAAAGGGTGATTGTGACATATCACTGGACCCAGCACCTTGGTGATGTGACTCTCCTCTCCTCCTTAGGCCCTGCTTACATTGTGTCTGTTGAAATACGGCTGGTCCAACACCTAG|GTTGGGCCCGAAGGCATCCTGCAGAACGGGGCTGTGGACGACAGTGTAGCCAAGACCAGCCAGTTGTTGGCTGAGTTGAACTTCGAGGAAGATGAAGAAGACACCTATTACACGAAGGACCTCCCCATACACGCCTGCAG___TTACTGTGGAATACACGATCCTGCCTGCGTGGTTTACTGTAATACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger protein 429 2 GBM other missense FALSE NA NA NA NA NA NA NA NA NA 8511 RIN2::PTPRT ENSG00000132669.14::ENSG00000196090.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIN2 ENSG00000132669.14 protein_coding + + chr20:19757606-20002457:+ chr20:19889658:+ chr20:19738250-19983101:+ chr20:19870302:+ PTPRT ENSG00000196090.14 protein_coding - + chr20:42072752-43189970:- chr20:42679485:+ chr20:40701392-41818610:- chr20:41308125:+ chr20:19916378,chr20:19916495,chr20:19916378,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19983888,chr20:19916377 chr20:42662962,chr20:42662970,chr20:42662970,chr20:42655678,chr20:42655676,chr20:42655658,chr20:42655657,chr20:42655724,chr20:42655716,chr20:42655719,chr20:42655710,chr20:42655693,chr20:42655690,chr20:42655682,chr20:42662958 NA NA chr20:19897022,chr20:19897139,chr20:19897022,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19964532,chr20:19897021 chr20:41291602,chr20:41291610,chr20:41291610,chr20:41284318,chr20:41284316,chr20:41284298,chr20:41284297,chr20:41284364,chr20:41284356,chr20:41284359,chr20:41284350,chr20:41284333,chr20:41284330,chr20:41284322,chr20:41291598 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 9 9 4 61 12 ENST00000255006.12 unknown downstream upstream duplicates(1) GAAGAGATGCTGGCGTGAAGGG___GAGTCCCCGGCGTGCAGTGGAGCCTCGCTGGGGGAAATGACAGCTTGGACCATGGGCGCCCGCGGTCTGGACAAGCGAGGAAGTTTCTTTAAG|TAAAAATGGCAGAACAATAAAGAAAATGGAAGAAAGAGAAAATATGAGAAGAAATGGAAGAAAATGGAGAAAAATGGAAGAAAGAGAAAATATCTCTAACATCCAACATAGCCATTTTTATTCTTCCATGTCCATTCCAATATTTATGTACTGACACATTTTTTGTGTTGTTATAATAACACATAGACCCAATGTAGATTCATTTTTCTTCCTTCACTTATATTGTAAGGATTTTTTTTTTCATATACTGCTTGAGCTTTATCA MTAWTMGARGLDKRGSFFK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8513 THSD7A::ENSG00000230333 ENSG00000005108.17::ENSG00000230333.6 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA THSD7A ENSG00000005108.17 protein_coding - - chr7:11370365-11832198:- chr7:11541419:- chr7:11409992-11871824:- chr7:11581046:- ENSG00000230333 ENSG00000230333.6 lncRNA + - chr7:11180902-11520175:+ chr7:11206918:- chr7:11220529-11559802:+ chr7:11246545:- chr7:11391932,chr7:11536970,chr7:11536983,chr7:11391940 chr7:11271990,chr7:11260426,chr7:11260431,chr7:11271995 NA NA chr7:11431559,chr7:11576597,chr7:11576610,chr7:11431567 chr7:11311617,chr7:11300053,chr7:11300058,chr7:11311622 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Spondin-like_TSP1_domain(23%),Thrombospondin_type_1_domain(25%)| TSP1_ADAMTS(94%),TSP1_CCN(100%),TSP1_spondin(0%),TSP_1(0%)| 3 11 7 129 23 ENST00000423059.9 unknown upstream downstream mismatches(1) GCTTCAAACTGAGGAAGCGGCGCATTACCAATGAGCCCACTGGAGGCTCTGGGGTAACCGGAAACTGCCCTCACTTACTGGAAGCCATTCCCTGTGAAGAGCCTGCCTGTTATGACTGGAAAGCAGTGAGACTGGGAAACTGCGAGCCAGATAACGGAAAGGAGTGTGGTCCAGGCACGCAAGTTCAAGAGGTTGTGTGCATCAACAGTGATG|GGAAGTTTTTATACAATTCAGTGATGAATGAATCTGAGAAACACAGAAAAAG___GGAATAGGAGCCAGCCTTCCTGTTTACGAACTGCACCTGATGTGACTCGGCAGGAAACTTCCACCAAAACATACAT FKLRKRRITNEPTGGSGVTGNCPHLLEAIPCEEPACYDWKAVRLGNCEPDNGKECGPGTQVQEVVCINSD|gkflynsvmnesekhrkre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8516 CROCCP2::ABCC1 ENSG00000291072.1::ENSG00000103222.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 865 TRUE 1495 TRUE 586 CROCCP2 ENSG00000291072.1 lncRNA - - chr1:16618253-16644686:- chr1:16644646:- chr1:16944748-16971181:- chr1:16971141:- ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16007816:+ chr16:16042995-16237114:+ chr16:16101673:+ chr1:16639055,chr1:16639055,chr1:16639063 chr16:15970396,chr16:15970400,chr16:15970388 NA NA chr1:16965550,chr1:16965550,chr1:16965558 chr16:16064253,chr16:16064257,chr16:16064245 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(100%) |ABC_membrane(100%),ABC_tran(100%) 0 17 1 119 282 ENST00000639456.1 ENST00000678422.1 upstream upstream mismatches(10) GAACGGACGCCGTAGCCGAGAGGTTGGGCGGATGTTGTGAACCGGGTCGCGGCGGCCGAGGCTCGGG|GACTGGAATGTCACGTGGAATACCAGCAACCCCGACTTCACCAAGTGCTTTCAGAACACGGTCCTCGTGTGGGTGCCTTGTTTTTACCTCTGGGCCTGTTTCCCCTTCTACTTCCTCTATCTCTCCCGACATGACCGAGGCTACATTCAGATGACACCTCTCAACAAAACCAAAACT___GCCTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8517 CROCCP2::ABCC1 ENSG00000291072.1::ENSG00000103222.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1495 TRUE 586 CROCCP2 ENSG00000291072.1 lncRNA - - chr1:16618253-16644686:- chr1:16643028:- chr1:16944748-16971181:- chr1:16969523:- ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16007816:+ chr16:16042995-16237114:+ chr16:16101673:+ chr1:16639055,chr1:16639055,chr1:16639063 chr16:15970396,chr16:15970400,chr16:15970388 NA NA chr1:16965550,chr1:16965550,chr1:16965558 chr16:16064253,chr16:16064257,chr16:16064245 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(100%) |ABC_membrane(100%),ABC_tran(100%) 5 0 2 237 282 ENST00000639456.1 ENST00000678422.1 upstream upstream mismatches(1) TGTGAACCGGGTCGCGGCGGCCGAGGCTCGGG___CCTCCAGGACCACTGGCTGCCCATGAGAGACGAAGGATGGCATCCAAGGGGGCCGGCGTGTCTTTCTCCCGCAAGAGCTGTAGGCTGACCTCAGATGCTGAGAAATCCAGGGTCACAG|GACTGGAATGTCACGTGGAATACCAGCAACCCCGACTTCAC...TTCCCCTTCTACTTCCTCTATCTCTCCCGACATGACCGAGGCTACATTCAGATGACACCTCTCAACAAAACCAAAACT___GCCTTGGGATTTTTGCTGTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8518 CROCCP2::ABCC1 ENSG00000291072.1::ENSG00000103222.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1495 TRUE 586 CROCCP2 ENSG00000291072.1 lncRNA - - chr1:16618253-16644686:- chr1:16642767:- chr1:16944748-16971181:- chr1:16969262:- ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16007816:+ chr16:16042995-16237114:+ chr16:16101673:+ chr1:16639055,chr1:16639055,chr1:16639063 chr16:15970396,chr16:15970400,chr16:15970388 NA NA chr1:16965550,chr1:16965550,chr1:16965558 chr16:16064253,chr16:16064257,chr16:16064245 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(100%) |ABC_membrane(100%),ABC_tran(100%) 2 0 2 182 282 ENST00000639456.1 ENST00000678422.1 upstream upstream none GGATGGCATCCAAGGGGGCCGGCGTGTCTTTCTCCCGCAAGAGCTGTAGGCTGACCTCAGATGCTGAGAAATCCAGGGTCACAG___GCATTGTGCAGGAGAAGCTGCTGAATGACTACCTGAACCGCATCTTTCCTCTTCTGACCATGCACCCCCAGCAGCCACCGGCAG|GACTGGAATGTCACGTGGAATACCAGCAACCCCGACTTCACCAAGTGCTTTCAGAAC...TTCCCCTTCTACTTCCTCTATCTCTCCCGACATGACCGAGGCTACATTCAGATGACACCTCTCAACAAAACCAAAACT___GCCTTGGGATTTTTGCTGTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8519 IMMP2L::LAMB1 ENSG00000184903.10::ENSG00000091136.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1496 TRUE 587 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111329394:- chr7:110302700-111202573:- chr7:110969450:- LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107973071:- chr7:107564244-107643658:- chr7:107613516:- chr7:111130474,chr7:111130476 chr7:107973451,chr7:107973450 NA NA chr7:110770530,chr7:110770532 chr7:107613896,chr7:107613895 NA NA sense sense stop-codon intron CDS/splice-site deletion high none Signal_peptidase__peptidase_S26_(48%)|Laminin_EGF_domain(67%) Peptidase_S26(0%)|Laminin_EGF(75%) 4 1 13 12 1062 ENST00000450877.5 ENST00000676574.1 upstream downstream duplicates(1),low_entropy(1) TTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACACCGTGGTGACATTGTATCATTGGT___...CCTCACTAGATTTACCTCCTCATCTGGCTCTTCATTTGTGGTACTTTTAATGCACCAGTAATG___TTTCTCCTGAACTGCTCTTGGTCTCCATGAAGGCTACTGGCAGGAGCACATGAGAGAG|CCAGAGCACTGGGGCTTAAGCAATGATTTGGATGGATGTCGACCATGTGACTGTGACCTTGGGGGAGCCTTAAACAACAG___TTGCTTTGCGGAGTCAGGCCAGTGCTCATGCCGGCCTCACATGATTGGACGTCAGTGCAACGAAGTGGAACCTGGTTACTACTTTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8520 IMMP2L::LAMB1 ENSG00000184903.10::ENSG00000091136.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1496 TRUE 587 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111392802:- chr7:110302700-111202573:- chr7:111032858:- LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107973071:- chr7:107564244-107643658:- chr7:107613516:- chr7:111130474,chr7:111130476 chr7:107973451,chr7:107973450 NA NA chr7:110770530,chr7:110770532 chr7:107613896,chr7:107613895 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Signal_peptidase__peptidase_S26_(48%)|Laminin_EGF_domain(67%) Peptidase_S26(20%)|Laminin_EGF(75%) 2 2 6 18 1062 ENST00000450877.5 ENST00000676574.1 upstream downstream none CAAAAACCCCTAAATGCTTGGGTTCTGAGACTTTTATAATTGGCGAACACATCCACATGCCAGGTGGGTGGGACCCCCCAGCTCCATGGGGACAAAAGCTACTATGCTCTGGACCCTTCCAGACCTCACTAGATTTACCTCCTCATCTGGCTCTTCATTTGTGGTACTTTTAATGCACCAGTAATG|CCAGAGCACTGGGGCTTAAGCAATGATTTGGATGGATGTCGACCATGTGACTGTGACCTTGGGGGAGCCTTAAACAACAG___TTGCTTTGCGGAGTCAGGCCAGTGCTCATGCCGGCCTCACATGATTGGACGTCAGTGCAACGAAGTGGAACCTGGTTACTACTTTGCCAC...AGGCTCAAG___ATATGTCGTCCTTCCTCGGCCGGTGTGCTTTGAGAAGGGAACAAACTACACGGTGAGGTTGGAGCTGCCTCAGTACACCTCCTCTGATAGCG M|PEHWGLSNDLDGCRPCDCDLGGALNNSCFAESGQCSCRPHMIGRQCNEVEPGYYFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8521 IMMP2L::LAMB1 ENSG00000184903.10::ENSG00000091136.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1496 TRUE 587 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111390571:- chr7:110302700-111202573:- chr7:111030627:- LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107973071:- chr7:107564244-107643658:- chr7:107613516:- chr7:111130474,chr7:111130476 chr7:107973451,chr7:107973450 NA NA chr7:110770530,chr7:110770532 chr7:107613896,chr7:107613895 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none Signal_peptidase__peptidase_S26_(48%)|Laminin_EGF_domain(67%) Peptidase_S26(20%)|Laminin_EGF(75%) 0 1 8 3 1062 ENST00000489381.1 ENST00000676574.1 upstream downstream duplicates(1) CTCATCTGGCTCTTCATTTGTGGTACTTTTAATGCACCAGTAATG___GAACAAGCAGCAGGAGCTAATGGACCATAAGAGGGAAATTTGTTGTTTAAACAATG...GGGAAAGTACACTTTTTCTGTCACACCGCATGAGAAG|CCAGAGCACTGGGGCTTAAGCAATGATTTGGATGGATGTCGACCATGTGACTGTGACCTTGGGGGAGCCTTAAACAACAG___TTGCTTTGCGGAGTCAGGCCAGTGCTCATGCCGGCCTCACATGATTGGACGTCAGTGCAACGAAGTGGAACCTGGTTACTACTTTGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8522 IMMP2L::LAMB1 ENSG00000184903.10::ENSG00000091136.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1496 TRUE 587 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111487238:- chr7:110302700-111202573:- chr7:111127294:- LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107973071:- chr7:107564244-107643658:- chr7:107613516:- chr7:111130474,chr7:111130476 chr7:107973451,chr7:107973450 NA NA chr7:110770530,chr7:110770532 chr7:107613896,chr7:107613895 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Signal_peptidase__peptidase_S26_(48%)|Laminin_EGF_domain(67%) Peptidase_S26(5%)|Laminin_EGF(75%) 1 5 3 107 1062 ENST00000405709.7 ENST00000676574.1 upstream downstream none GAAGAGCGGGAGAAAGG___CCTTCTTTGAATCCTGGGGGGAGCCAGTCATCTGATGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACACCGTGGTGACATTGTATCATTGGT|CCAGAGCACTGGGGCTTAAGCAATGATTTGGATGGATGTCGACCATGTGACTGTGACCTTGGGGGAGCCTTAAACAACAG___TTGCTTTGCGGAGTCAGGCCAGTGCTCATGCCGGCCTCACATGATTGGACGTCAGTGCAACGAAGTGGAACCTGGTTACTACTTTGCCAC...CTCCTGGACTGGAGCCGGCTTCGTCCGAGTGCCgGAAGGGGCTTATTTGGAGTTTTTCATTGACAACATACCATATTCCATGGAGTACGACATCCTAATTC PSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLv|qstga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8523 ANAPC1::MERTK ENSG00000153107.13::ENSG00000153208.19 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANAPC1 ENSG00000153107.13 protein_coding - - chr2:111611639-111884690:- chr2:111831286:- chr2:112369216-112642267:- chr2:112588863:- MERTK ENSG00000153208.19 protein_coding + - chr2:111898607-112029561:+ chr2:111899966:- chr2:112656184-112787138:+ chr2:112657543:- chr2:111828228 chr2:111921880 NA NA chr2:112585805 chr2:112679457 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Anaphase-promoting_complex_subunit_1_WD40_beta-propeller_domain(100%)| ANAPC1(100%),Apc1_N(100%)| 7 7 3 422 25 ENST00000341068.8 unknown upstream downstream duplicates(1),mismappers(1),mismatches(4) GCACAATTGATCCAG___GTCAAACAGGATTTATGCATCATCCATCATTTTTTACGTCTGAGCCACCAAGTATTTATCAGTGGGTGAGTTCTTGTCTGAAGGGTGAAGGAATGCCACCTTATCCTTACCTCCCTGGAATCTGTGAAAGAAGCAGACTTGTAGTCTTG|TTTATTCCAGCCTCCTCAAGAAGTGCATCAGCGATCAAACTTGAAATCTGTTCATCACTCACTCCCCAAATAAGCTGTTCAAGCAGAATGAAACCGGCCTTCCTTGCCTCCACGTATCAGTCCAGCATCTTGTATTAAAATGCCTGGAACAAGCCGGGCGCGGTGGCTCACGACT TIDPGQTGFMHHPSFFTSEPPSIYQWVSSCLKGEGMPPYPYLPGICERSRLVVL|fipassrsasaikleicssltpqiscssrmkpaflastyqssily* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8530 LINC02615::LARP1B ENSG00000251432.8::ENSG00000138709.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 867 TRUE 1499 TRUE 588 LINC02615 ENSG00000251432.8 lncRNA + + chr4:128292751-128519398:+ chr4:128303035:+ chr4:129213906-129440553:+ chr4:129224190:+ LARP1B ENSG00000138709.20 protein_coding + + chr4:128061286-128222931:+ chr4:128199439:+ chr4:128982441-129144086:+ chr4:129120594:+ chr4:128345865 chr4:128193317 NA NA chr4:129267020 chr4:129114472 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 6 4 3 39 45 ENST00000509834.6 ENST00000326639.11 downstream upstream duplicates(1) ACTACAATTGACTGCTGACTTCTCACCCAAGGAAGTAACTGTATCCCAGCCTAATCTCAGTGGATAAGCCCACAGGGTTAAG___...TTTTGGAGACAGTTTGTGGAGAAG___GTCCTCACAACATTGTGCAACAAGTGTGAAAGATGTAGTCTCCATTTACGGCTACTGAAATAGGCTGAGAGAGG|CACTTCAAATGCTTCACCTTCAGAAGGCGCACCACTAGCAGGAAGTTATGGATGTACTCCTCATTCATTCCCAAAGTTCCAGCATCCTTCTCATGAACTTTTGAAGGAAAATGGCTTTACCCAACAAGTGTACCACAAGTATCGTCGAAGATGCCTAAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8531 LINC02615::LARP1B ENSG00000251432.8::ENSG00000138709.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1499 TRUE 588 LINC02615 ENSG00000251432.8 lncRNA + + chr4:128292751-128519398:+ chr4:128293122:+ chr4:129213906-129440553:+ chr4:129214277:+ LARP1B ENSG00000138709.20 protein_coding + + chr4:128061286-128222931:+ chr4:128199439:+ chr4:128982441-129144086:+ chr4:129120594:+ chr4:128345865 chr4:128193317 NA NA chr4:129267020 chr4:129114472 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none none 2 0 1 44 45 ENST00000505133.5 ENST00000326639.11 downstream upstream none ATAAATTGTTCTGACCCATTCAGGGCATTTTGGGGACAGACTCTACAGTTTACTAGTGGCCCCAGGACATCCTGCAAAAGAGGTGAAATCAGTATTGGAGAAGTGGTCTCATGAAGATGGGAGCACGACTACTACAATTGACTGCTGACTTCTCACCCAAGGAAGTAACTGTATCCCAGCCTAATCTCAGTGGATAAGCCCACAGGGTTAAG|CACTTCAAATGCTTCACCTTCAGAAGGCGCACCACTAGCAGGAAGTTATGGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8537 PKD1-AS1::C3orf62 ENSG00000259933.6::ENSG00000188315.8 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1501 TRUE 589 PKD1-AS1 ENSG00000259933.6 lncRNA + + chr16:2091436-2095433:+ chr16:2091614:+ chr16:2141437-2145434:+ chr16:2141615:+ C3orf62 ENSG00000188315.8 protein_coding - - chr3:49268596-49277232:- chr3:49276312:- chr3:49306029-49314665:- chr3:49313745:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site intron translocation high none |Domain_of_unknown_function_(DUF4712)(46%) |DUF4712(90%) 1 7 3 118 28 ENST00000570072.5 ENST00000343010.8 downstream downstream inconsistently_clipped(1) CGGACGCTGAGGGCGGCCAGGGCGCGGCCGGCCGCCGGGAACTCGAGGCGCA--------???GCGTGCAGCCCCACGGCCGGGCTGTAGCGCGTGAGCTCCAGGAACACAGCGCGGCTCCTGCGCAGAGGGTGCGG|CTCTGTGACTGCATTTGGGGAGTTGACAGACATTCTTCAGAATCTGGCCTAGGAAACt___GAAAGATATGGAGAGAGATTTGAAGGCTGACTCAAACATGCCACTCAACAATTCTAGCCAAGAGGTCACAAAGGATCTGCTTGATATGATTG___ACCATACAAGCATCCGAACTATTGAAGAATTGGCTGGAAAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8538 PKD1-AS1::C3orf62 ENSG00000259933.6::ENSG00000188315.8 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1501 TRUE 589 PKD1-AS1 ENSG00000259933.6 lncRNA + + chr16:2091436-2095433:+ chr16:2091614:+ chr16:2141437-2145434:+ chr16:2141615:+ C3orf62 ENSG00000188315.8 protein_coding - - chr3:49268596-49277232:- chr3:49274140:- chr3:49306029-49314665:- chr3:49311573:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Domain_of_unknown_function_(DUF4712)(46%) |DUF4712(52%) 3 1 3 118 146 ENST00000570072.5 ENST00000343010.8 downstream downstream none CGCGCTGAGGCGGCGCAGCGCAAAGGGGCGGACGCTGAGGGCGGCCAGGGCGCGGCCGGCCGCCGGGAACTCGAGGCGCA-----------GCGTGCAGCCCCACGGCCGGGCTGTAGCGCGTGAGCTCCAGGAACACAGCGCGGCTCCTGCGCAGAGGGTGCGG|GAAAGATATGGAGAGAGATTTGAAGGCTGACTCAAACATGCCACTCAACAATTCTAGCCAAGAGGTCACAAAGGATCTGCTTGATATGATTG___ACCATACAAGCATCCGAACTATTGAAGAATTGGCTGGAAAAATAGAATTTGAAAACGAATTGAACCACATGTGTGGTCATTGCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8543 KDM2B::TSPAN11 ENSG00000089094.20::ENSG00000110900.16 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KDM2B ENSG00000089094.20 protein_coding - - chr12:121429096-121581023:- chr12:121520985:- chr12:121866899-122018928:- chr12:121958788:- TSPAN11 ENSG00000110900.16 protein_coding + - chr12:30926428-30996602:+ chr12:30957164:- chr12:31079362-31149537:+ chr12:31110098:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Cupin-like_domain(100%),JmjC_domain__hydroxylase(100%),Jumonji_helical_domain(39%)| JHD(0%),JmjC(100%)| 3 1 6 66 4 ENST00000377071.9 unknown upstream downstream none ACGAGGAGTGGGTGCTGTCAGGCAAACAGAGTGACATCTTTCTGGGAGACCGTGTGGAACGATGCCAAAGAATTGAGCTGAAGCAGGGCTACACATTTTTCATCCCTTCCG___GTTGGATCCATGCCGTCTACACCCCTGTAGACTCTTTGGTGTTCGGCGGAAACATCCTGCACAGCTTTAACGTGCCCATGCAGCTGCGGATCTACGAGATCGAGGACAGGACGCGG|ATGGCAAGCCTGGAAGGTGGGCAGCAGCCACGTTCAGTGGGATGTTGATGTACGAAGAGAAGGGCTTTGAGACTCGGCAGAAGGTGCTTCCCTCCCACGGCCTCCCTGACTCCTGAAGTGATGCTCTCAAGTCATCGCACTCCCCTGCTGGGGTTCAAGTCCTCCATCTTCTCTGCCACCTGTCTTAGCCCCATGTATCCCCGGTCCCCGGGGAAATACCAAGGCCTCAGCTAATGCTCAAGGGCAG EEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTR|masleggqqprsvgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8544 IPMK::PRKG1 ENSG00000151151.6::ENSG00000185532.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 873 FALSE NA FALSE NA IPMK ENSG00000151151.6 protein_coding - - chr10:58191517-58267894:- chr10:58267422:- chr10:59951278-60027654:- chr10:60027182:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:52054484:+ chr10:52750648-54058183:+ chr10:53814244:+ chr10:58264169,chr10:58264169,chr10:58264172 chr10:52004557,chr10:52004562,chr10:52004554 NA NA chr10:60023929,chr10:60023929,chr10:60023932 chr10:53764317,chr10:53764322,chr10:53764314 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Cyclic_nucleotide-binding_domain(51%),Protein_kinase_domain(100%) |Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),cNMP_binding(2%) 4 0 6 66 14 ENST00000373935.4 ENST00000401604.8 upstream upstream duplicates(1),mismatches(1) CGAGGCGCCGGGCCCCCCAGAAATGCGGACCTCACCGGCGATCGAGTCCACCCCTGAGGGCACCCCGCAGCCGGCGGGCGGCAGACTCCGCTTCCTCAACGGCTGCGTGCCCCTCTCGCATCAGGTGGCCGGGCACATGTACGGGAAGGACAAAGTGG|ACCCACTATGAAAATGGAGAATATATTATCAGGCAAGGTGCAAGAGGGGACACCTTCTTTATCATCAGCAAAGGAACG___GTAAATGTCACTCGTGAA EAPGPPEMRTSPAIESTPEGTPQPAGGRLRFLNGCVPLSHQVAGHMYGKDKV|dpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE cGMP-dependent protein kinase AGC PKG Q13976 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8545 EPB41::SERINC2 ENSG00000159023.23::ENSG00000168528.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE TRUE 874 FALSE NA FALSE NA EPB41 ENSG00000159023.23 protein_coding + + chr1:28887091-29120046:+ chr1:28997319:+ chr1:29213603-29446558:+ chr1:29323831:+ SERINC2 ENSG00000168528.12 protein_coding + + chr1:31409565-31434680:+ chr1:31432967:+ chr1:31882412-31907527:+ chr1:31905814:+ chr1:29010818,chr1:29010817 chr1:31432022,chr1:31431784 NA NA chr1:29337330,chr1:29337329 chr1:31904869,chr1:31904631 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none FERM_N-terminal_domain_(79%)|Serine_incorporator_(Serinc)(26%) FERM_N(39%)|Serinc(11%) 2 4 3 87 582 ENST00000647103.1 ENST00000373710.5 downstream upstream duplicates(1),mismatches(2) CGACTATTCTCCTCGTTTCTCAAAAGGCCCAAATCTCAGGTGTCCGAGGAAGAAGGCAAAGAAGTAGAGTCAGATAAAGAAAAAGGTGAAGGAGGTCAGAA...CCTCAATCAAAAGCAGAAACAGAATTAAAAGCTTCCCAAAAACCAATCAGAAAACACAGGAACATGCACTGCAAGGTTTCTTTGTTGGATGACACAGTTTATGAATGTGTTGTGGAG___AAACATGCTAAGGGACAAGATTTGCTTAAACGAGTATGTGAGCATCTCAATCTTTTGGAAGAAGACTATTTTGGTCTAGCCATTTGGGATAACGCAACCTCTAAG|TCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGATGCAGACCGAGGAGTGCCCACCTATGCTAGACGCCACACAGCAGCAGCAGCAGGTGGCAGCCTGTGAGGGCCGGGCCTTTGACAACGAGCAGGACGGCGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCCTCACTGCACGTCATGATGACGCTCACCAACTGGTACAA___GCCCGGTGAGACCCGGAAGATGATCAGC MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSK|sallrppageqpdadrgvptyarrhtaaaaggsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8546 SLC16A9::ENSG00000228566 ENSG00000165449.12::ENSG00000228566.2 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC16A9 ENSG00000165449.12 protein_coding - - chr10:59650764-59736002:- chr10:59672770:- chr10:61410522-61495760:- chr10:61432528:- ENSG00000228566 ENSG00000228566.2 lncRNA + - chr10:63664664-64693446:+ chr10:63777590:- chr10:65424424-66453203:+ chr10:65537350:- chr10:59666425,chr10:59666431 chr10:63779044,chr10:63779047 NA NA chr10:61426183,chr10:61426189 chr10:65538804,chr10:65538807 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Major_Facilitator_Superfamily(23%)| MFS_1(36%)| 2 1 6 28 3 ENST00000395347.1 unknown upstream downstream mismatches(1) GGAAAAACAGCCTGGGTTGGATCCCTGGCAAGTGGAGTTGGCTTGCTTGCAA___GTCCTGTCTGCAGTCTCTGTGTCTCATCTTTTGGAGCAAGACCTGTCACAATCTTCAGTGGCTTCATGGTGGCTGGAGGCCTGATGTTGAGCAGTTTTGCTCCCAATATCTACTTTCTGTTTTTTTCCTATGGCATTGTTGTAG|AGGTGGTGTTTTACCACATTGCCCAGGCTAGTCTCAAACTCCTGGACTCAAGCCATCCACCTACCTCAGCCTCCCTTAAATGTATCTTTCTACTCATTAATGGAAAGTGCTCGAGGCAGGCATCTGTGAATTTGTATACATAAATTCATTCCTTAGGTGGGGTCATGAAAATGGACACACGACCCAGACCTCGCATGAAAAT GKTAWVGSLASGVGLLASPVCSLCVSSFGARPVTIFSGFMVAGGLMLSSFAPNIYFLFFSYGIVV|evvfyhiaqaslklldsshpptsaslkcifllingkcsrqasvnlyt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8549 THRB::RARB ENSG00000151090.20::ENSG00000077092.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1504 TRUE 590 THRB ENSG00000151090.20 protein_coding - - chr3:24117153-24495756:- chr3:24494687:- chr3:24158644-24537247:- chr3:24536178:- RARB ENSG00000077092.20 protein_coding + - chr3:24687887-25597932:+ chr3:24742599:- chr3:24729378-25639423:+ chr3:24784090:- chr3:24428386,chr3:24428391 chr3:24752186,chr3:24752186 NA NA chr3:24469877,chr3:24469882 chr3:24793677,chr3:24793677 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 2 3 3 161 19 ENST00000356447.9 unknown upstream downstream mismappers(1),mismatches(1) GAATAATGTGAGTGCGCTTGGAAAAGAGACCTCCTGCTCCGCGGGCTCGGGGCAAGAGCCCGCAGGCTACCTTCCCCGGGCAGGGGCGCTCAACCCAACCGGCTCCAGGGCACTG|AATCTCGCTCTGTCACCCTGGCTGGAGTGCAGTGGTGCGGTCTTGGCTCACTGCAACCTCCGTCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCATGTTGGCCAGGCTGGTCTCAATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGTTGAGATTCCAGGCGgGAATCcCCGCcCCCAgCCTGGACTTTATTCTTATGCAATATAGTCCTTGAAGATATTTCTTATCCAATAATCACCACTGCCCTAGCAG___GTATGTGAAATTCTCCAGACAATACTTC...TCATTCTGTAAATTTGTTCTAAATAAAACGTCCAGATTATGATGCATTTTAAAGGGGGTTATCGGTAGTATTTAGAGGAtGAAGAAATAAATTTGGCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8551 THRB::RARB ENSG00000151090.20::ENSG00000077092.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 1504 TRUE 590 THRB ENSG00000151090.20 protein_coding - - chr3:24117153-24495756:- chr3:24494687:- chr3:24158644-24537247:- chr3:24536178:- RARB ENSG00000077092.20 protein_coding + + chr3:24687887-25597932:+ chr3:25501182:+ chr3:24729378-25639423:+ chr3:25542673:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%),Zinc_finger__C4_type_(two_domains)(66%) |Hormone_recep(100%),zf-C4(0%) 0 1 0 161 103 ENST00000356447.9 ENST00000687676.1 upstream upstream none CTCGGGGCAAGAGCCCGCAGGCTACCTTCCCCGGGCAGGGGCGCTCAACCCAACCGGCTCCAGGGCACTG|GGCTTTTTCCGCAGAAGTATTCAGAAGAATA...AGGAATGACAGGAACAAGAAAAAGAAGGAGACTTCGAAGCAAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAGAAGATCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8552 PHF20::AGO3 ENSG00000025293.17::ENSG00000126070.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1505 TRUE 591 PHF20 ENSG00000025293.17 protein_coding + + chr20:35771974-35950370:+ chr20:35847434:+ chr20:34359896-34538292:+ chr20:34435356:+ AGO3 ENSG00000126070.20 protein_coding + - chr1:35930718-36072500:+ chr1:36023367:- chr1:36396319-36538101:+ chr1:36488968:- chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837,chr20:35856837 chr1:36053260,chr1:36053271,chr1:36053222,chr1:36053225,chr1:36053229,chr1:36053233,chr1:36053235,chr1:36053252,chr1:36053257 NA NA chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759,chr20:34444759 chr1:36518861,chr1:36518872,chr1:36518823,chr1:36518826,chr1:36518830,chr1:36518834,chr1:36518836,chr1:36518853,chr1:36518858 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none DNA_repair_protein_Crb2_Tudor_domain(51%)| MBT(100%),Tudor_3(0%)| 4 1 3 200 10 ENST00000374012.8 unknown downstream downstream none CTG___GTATCCAGCTCACATAGAAGACATTGACTACGAGGAAGGAAAAGTACTCATCCATTTCAAGCGTTGGAACCATCGTTATGATGAGTGGTTCTGCTGGGACAGTCCTTATTTACGCCCTTTAGAGAAAATACAGCTGAGGAAAGAGGGCTTGCATGAAGAGGATGGATCTTCT___GAATTTCAAATAAATGAGCAGGTCCTTGCTTGCTGGTCTGATTGTCGTTTTTACCCGGCCAAAGTCACTGCTGTTAACAAGGATG|ATGGTGTCAGAAGTGGGATCCGAAGTAGAACCTCTAGCAATCCCCAGAAGCACTGAGTGACGAAGCATGGTACCAGTCAGACTCTCTGTGTCCATTCCTCTCTTGCAGCAACTGGGGATTGTGGGTAAGCTCTCAGATTCTGAAGCTCCATGGATTTGTG WYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDSPYLRPLEKIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKD|dgvrsgirsrtssnpqkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8553 PHF20::AGO3 ENSG00000025293.17::ENSG00000126070.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1505 TRUE 591 PHF20 ENSG00000025293.17 protein_coding + + chr20:35771974-35950370:+ chr20:35847434:+ chr20:34359896-34538292:+ chr20:34435356:+ AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:36054946:+ chr1:36396319-36538101:+ chr1:36520547:+ chr20:35856837 chr1:36053206 NA NA chr20:34444759 chr1:36518807 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none DNA_repair_protein_Crb2_Tudor_domain(51%)|Piwi_domain(19%) MBT(100%),Tudor_3(0%)|Piwi(0%) 0 2 2 200 167 ENST00000374012.8 ENST00000373191.9 downstream upstream none GAAAATACAGCTGAGGAAAGAGGGCTTGCATGAAGAGGATGGATCTTCT___GAATTTCAAATAAATGAGCAGGTCCTTGCTTGCTGGTCTGATTGTCGTTTTTACCCGGCCAAAGTCACTGCTGTTAACAAGGATG|GGTACCAGTCGTCCTTCACACTATCATGTTTTATGGGATGATAACTGCTTTACTGCAGATGAACTTCAGCTG...GCTCTGCCACACTTACGTACGCTGTACACGATCTGTTTCTATACCTGCACCAGCGTATTATGCTCACCTGGTAGCATTTAGAGCCAGATATCATCTTGTGGACAAAGAACATGACAG___TGCTGAAGGAAGTCACGTTTCAG KIQLRKEGLHEEDGSSEFQINEQVLACWSDCRFYPAKVTAVNKD|gyqssftlscfmg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8554 NOS1AP::ATF6 ENSG00000198929.13::ENSG00000118217.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOS1AP ENSG00000198929.13 protein_coding + + chr1:162069691-162370475:+ chr1:162154476:+ chr1:162039481-162340265:+ chr1:162124266:+ ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161819633:+ chr1:161736088-161947364:+ chr1:161789423:+ chr1:162242875 chr1:161801393 NA NA chr1:162212665 chr1:161771183 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Phosphotyrosine_interaction_domain_(PTB/PID)(19%)|bZIP_transcription_factor(100%) PID(30%)|bZIP_1(100%),bZIP_2(100%) 0 6 1 14 333 ENST00000361897.10 ENST00000681738.1 downstream upstream duplicates(1) GCCTGGACGTGCCAAGGCCCAACAGCAGGGTGGAGATCGTGGCTGCCATGCGCCGGATACGG|ATTGCTGTGCTAAGGAGACAGCAACGTATGATAAAAAATCGAGAATCCGCTTGTCAGTCTCGCAAGAAGAAGAAAGAATATATGCTAGGGTTAGAGGCGAGATTAAAGGCTGCCCTCTCAGAAAACGAGCAACTGAAGAAAGAAAAT LDVPRPNSRVEIVAAMRRIR|IAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Lung adenocarcinoma UTERUS,UTERUS,LUNG no_match 162040072,162257226,162040072 FALSE,FALSE,FALSE 161928236,161789423,161928236 FALSE,TRUE,FALSE YES,YES,YES Out-of-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8558 JMJD1C::LINC02929 ENSG00000171988.20::ENSG00000285551.2 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1506 TRUE 592 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63521738:- chr10:64926981-65281610:- chr10:65281498:- LINC02929 ENSG00000285551.2 lncRNA + + chr10:62520448-62672011:+ chr10:62643742:+ chr10:64280207-64431771:+ chr10:64403502:+ chr10:63455996 chr10:62640155 NA NA chr10:65215756 chr10:64399915 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 2 2 2 156 9 ENST00000633035.1 ENST00000395251.5 upstream upstream duplicates(2) CGCCGCACCGCACGCAGCCGAGCAGCGCCACAGCCGCCGCCGCCGTCGCAGCCGCAGTCGCCGCAGCTAGGCCCTCGGCCGTCGCAGGGAGCTCCGCAGCGACGTGGACCAAG|GAATTGGCCCCTACAAGTCAAGTTGCAAACCCTGGGTCAAAGGGTGAAGTAGAAGGAAGCTGGAAACACATAGTATTTTAGAAGTTTTTCAGAGAAATCACAAGGCAGGAACTTCTGCTCAGTTTGGAAGAAAGAGCATTCCATCATGACCCTTGGACTGGGTGAGAGCATCATCCTTTAATTAATGTCTGCGCTGGGTCAGATAACCATCACTGTCTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8559 JMJD1C::LINC02929 ENSG00000171988.20::ENSG00000285551.2 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1506 TRUE 592 JMJD1C ENSG00000171988.20 protein_coding - - chr10:63167221-63521850:- chr10:63521738:- chr10:64926981-65281610:- chr10:65281498:- LINC02929 ENSG00000285551.2 lncRNA + + chr10:62520448-62672011:+ chr10:62654843:+ chr10:64280207-64431771:+ chr10:64414603:+ chr10:63455996 chr10:62640155 NA NA chr10:65215756 chr10:64399915 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 156 37 ENST00000633035.1 ENST00000344640.7 upstream upstream none CGGCCGTCGCAGGGAGCTCCGCAGCGACGTGGACCAAG|GTGCTGGAATACAGAGAGGAACCAAACAGATAAAAATCCTTGCCTGCACGGAGCTTACCTTCAGCTAAGGGAGACAGTCAAAAACAAG___GATTTAGCCAAATTTGGGTGCTATTTCCCTTTTGTGGAGGGACTTTTCATCACAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8565 WNK2::SHB ENSG00000165238.17::ENSG00000107338.10 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WNK2 ENSG00000165238.17 protein_coding + + chr9:93184122-93320572:+ chr9:93185610:+ chr9:95946404-96082854:+ chr9:95947892:+ SHB ENSG00000107338.10 protein_coding - - chr9:37915898-38069227:- chr9:37974837:- chr9:37915895-38069224:- chr9:37974834:- chr9:93216354,chr9:93216328,chr9:93216353 chr9:38003621,chr9:38003623,chr9:38003622 NA NA chr9:95978636,chr9:95978610,chr9:95978635 chr9:38003618,chr9:38003620,chr9:38003619 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(11%)|SH2_domain(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|SH2(100%) 2 0 3 46 172 ENST00000427277.7 ENST00000377707.4 downstream downstream inconsistently_clipped(1) CGGCGACCGTGAGGAAGGAGGATGAGGGGGCGGCCGAGGCGAAGCCTGAGCCCGGGCGCACTCGCCGGGACGAGCCCGAAGAGGAGGAGGACGACGAGGACGACCTCAAGGCCGTGGCCACCTCTCTGGACGGCCGCTTCCTCAAGTTCGACATCGAGCTGGGCCGCGGTTCCTTCAAGACGGTCTACAAGGGGCTGGACACGGAGACCTGGGTGGAGGTGGCCTGGTGTGAGCTGCAG|AATTTCAGAGGCAGGAAAGTGTCCGGTCCCAGCATAAAGGTATCCAGTTATATGACACCCCTTACGAACCTGAAGGCCAAAGTGTTGACTC...CGGAGAGCACAGTCAGCCCCCGACTGCGGGAGAGCAAGCTGCCCCAGGATGACGACAGGCCCGCCGATGAGTACGACCAGCCTTGGGAGTGGAACCGGGTCACCATCCCAGCCCTGGCAG___CACAGTTTAATGGCAACGAGAAGCGGCAG ATVRKEDEGAAEAKPEPGRTRRDEPEEEEDDEDDLKAVATSLDGRFLKFDIELGRGSFKTVYKGLDTETWVEVAWCELQ|nfrgrkvsgpsikvssymtpltnlkakvlt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK2 Other WNK Q9Y3S1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE WNK lysine deficient protein kinase 2 2 gastric cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 8567 RIF1::SCHLAP1 ENSG00000080345.18::ENSG00000281131.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RIF1 ENSG00000080345.18 protein_coding + + chr2:151409883-151508013:+ chr2:151483335:+ chr2:152266397-152364527:+ chr2:152339849:+ SCHLAP1 ENSG00000281131.1 lncRNA + + chr2:180692104-180916939:+ chr2:180761771:+ chr2:181556831-181781666:+ chr2:181626498:+ NA NA NA NA NA NA NA NA sense sense unknown 3'UTR/splice-site intron deletion high none Rap1-interacting_factor_1_N_terminal(100%)| Rif1_N(100%)| 1 1 3 31 11 ENST00000454583.6 unknown downstream upstream none TTCTGAAATAATAGCACAATTTCAAAGAAGAGACTCTTTGCAAAGTTGATAACATTTCAAACCCTGAAGGACAGTGACTTATTAT___TTTCTTGAAGATGGCT...GGAGATATATACAAAGGACTTCCCTAGTATCGTTGGACCAACAAGCACAAGCAGATGGCAGGAAGATTAGAACATTGGATATTGATTGCCAGTTTTTAAG|CATTGGGCTCCAGAGTATCGACGGCGCTCTCCTGTGATGTAGGCCGTGAATTTCACGTGATGTGCACCTTGCTCCCAGCATGAATCCTAGACTGAAACTTCTTGGCGGCTGTAAAAATAAGATTTGGGGTTTTCACTTGGCACCTCATTTTCTTAATGTAGCAATAGCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8569 WNK2::ENSG00000255872 ENSG00000165238.17::ENSG00000255872.3 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WNK2 ENSG00000165238.17 protein_coding + + chr9:93184122-93320572:+ chr9:93185610:+ chr9:95946404-96082854:+ chr9:95947892:+ ENSG00000255872 ENSG00000255872.3 protein_coding - - chr9:37588413-38068687:- chr9:37974837:- chr9:37588410-38068684:- chr9:37974834:- chr9:93216354,chr9:93216328,chr9:93216353 chr9:38003621,chr9:38003623,chr9:38003622 NA NA chr9:95978636,chr9:95978610,chr9:95978635 chr9:38003618,chr9:38003620,chr9:38003619 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion high none Protein_kinase_domain(11%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)|FERM_M(100%),KH_6(100%),Mito_carr(100%),PDZ(100%),SH2(100%),Tom5(100%),WD40(100%),tRNA_m1G_MT(100%) 2 0 3 46 172 ENST00000427277.7 ENST00000540557.1 downstream downstream inconsistently_clipped(1) CGGCGACCGTGAGGAAGGAGGATGAGGGGGCGGCCGAGGCGAAGCCTGAGCCCGGGCGCACTCGCCGGGACGAGCCCGAAGAGGAGGAGGACGACGAGGACGACCTCAAGGCCGTGGCCACCTCTCTGGACGGCCGCTTCCTCAAGTTCGACATCGAGCTGGGCCGCGGTTCCTTCAAGACGGTCTACAAGGGGCTGGACACGGAGACCTGGGTGGAGGTGGCCTGGTGTGAGCTGCAG|AATTTCAGAGGCAGGAAAGTGTCCGGTCCCAGCATAAAGGTATCCAGTTATATGACACCCCTTACGAACCTGAAGGCCAAAGTGTTGACTC...CGGAGAGCACAGTCAGCCCCCGACTGCGGGAGAGCAAGCTGCCCCAGGATGACGACAGGCCCGCCGATGAGTACGACCAGCCTTGGGAGTGGAACCGGGTCACCATCCCAGCCCTGGCAG___CACAGTTTAATGGCAACGAGAAGCGGCAG ATVRKEDEGAAEAKPEPGRTRRDEPEEEEDDEDDLKAVATSLDGRFLKFDIELGRGSFKTVYKGLDTETWVEVAWCELQ|nfrgrkvsgpsikvssymtpltnlkakvlt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK2 Other WNK Q9Y3S1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE WNK lysine deficient protein kinase 2 2 gastric cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 8571 SLC35G1::ENSG00000255440 ENSG00000176273.15::ENSG00000255440.2 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC35G1 ENSG00000176273.15 protein_coding + + chr10:93893973-93956062:+ chr10:93894160:+ chr10:95653730-95715819:+ chr10:95653917:+ ENSG00000255440 ENSG00000255440.2 lncRNA + + chr11:74398825-74416379:+ chr11:74408987:+ chr11:74109870-74127424:+ chr11:74120032:+ chr10:93895994,chr10:93896069 chr11:74408745,chr11:74408745 NA NA chr10:95655751,chr10:95655826 chr11:74119790,chr11:74119790 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 1 1 115 2 ENST00000483386.5 ENST00000524441.2 downstream upstream mismatches(1) GCACCGGCCGCTGGTAGAGCGCGTGCCGCGAGATGCGGCCTCAGGACAGCACCGGGGTCGCGGAGCTCCAGGAGCCCGGGCTGCCGCTAACGGACGATGCACCCCCGGGCGCCACTGAGGAGCCGGCGGCCGCCGAGGCAGCTGGGGCGCCAGACCGCG|GTGTTTCAGATTCAGGATAAACAAGATAGACAAGCCTTGTTCCTGCCCTTAAGAAGCCCAGGACGAGGAATACAGACAAATAACACATTATTGAAATGCCCTGATAAGTGCTTTTCATAGATAATACTATGGAATTACAGAGGAGGGGCACTTAATCCAGACTGGGAaGGGC MRPQDSTGVAELQEPGLPLTDDAPPGATEEPAAAEAAGAPDR|gvsdsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8572 CORO7::ANKS3 ENSG00000262246.6::ENSG00000168096.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1508 TRUE 593 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4412356:- chr16:4404543-4475706:- chr16:4462357:- ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4702242:- chr16:4746511-4784379:- chr16:4752243:- chr16:4409867,chr16:4409880 chr16:4703639,chr16:4703642 NA NA chr16:4459868,chr16:4459881 chr16:4753640,chr16:4753643 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1899(92%),WD40(0%)|SAM_1(100%),SAM_2(100%) 2 1 1 57 84 ENST00000251166.9 ENST00000590803.5 upstream downstream mismatches(2) CCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCATGCAGGAACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|AGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACCTCCCCCATCAATGAGCGGGAcGTGGAGAGCAGCAGCAtCAGCAGCAGTCGGGGTACG MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|eqapprgyvtfnssgenpleeeglccrdvtspinerdvesssisssrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8573 CORO7::ANKS3 ENSG00000262246.6::ENSG00000168096.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1508 TRUE 593 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4412356:- chr16:4404543-4475706:- chr16:4462357:- ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4702237:- chr16:4746511-4784379:- chr16:4752238:- chr16:4409867,chr16:4409880 chr16:4703639,chr16:4703642 NA NA chr16:4459868,chr16:4459881 chr16:4753640,chr16:4753643 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1899(92%),WD40(0%)|SAM_1(100%),SAM_2(100%) 1 0 1 57 74 ENST00000251166.9 ENST00000592068.5 upstream downstream mismatches(2) CCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTaGAGCAGGAACCGCCCCTTCATGCAGGAACaACATCAAATCAAGCTGC...ATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|GCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGtATGTCtCCTCCCCCATCAATGAGCGGGAcGTGGAGAGCAG IAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|gSSPWLCHLQQQWREPPGRRGPLLPvClLPHQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8575 CORO7-PAM16::ANKS3 ENSG00000103426.12::ENSG00000168096.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1509 TRUE 594 CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4412356:- chr16:4390252-4470495:- chr16:4462357:- ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4702242:- chr16:4746511-4784379:- chr16:4752243:- chr16:4409867,chr16:4409880 chr16:4703639,chr16:4703642 NA NA chr16:4459868,chr16:4459881 chr16:4753640,chr16:4753643 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1899(85%),WD40(0%)|SAM_1(100%),SAM_2(100%) 2 1 1 57 84 ENST00000575334.5 ENST00000590803.5 upstream downstream mismatches(2) CCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCATGCAGGAACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|AGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACCTCCCCCATCAATGAGCGGGAcGTGGAGAGCAGCAGCAtCAGCAGCAGTCGGGGTACG MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|eqapprgyvtfnssgenpleeeglccrdvtspinerdvesssisssrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8576 CORO7-PAM16::ANKS3 ENSG00000103426.12::ENSG00000168096.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1509 TRUE 594 CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4412356:- chr16:4390252-4470495:- chr16:4462357:- ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4702237:- chr16:4746511-4784379:- chr16:4752238:- chr16:4409867,chr16:4409880 chr16:4703639,chr16:4703642 NA NA chr16:4459868,chr16:4459881 chr16:4753640,chr16:4753643 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1899(85%),WD40(0%)|SAM_1(100%),SAM_2(100%) 1 0 1 57 74 ENST00000575334.5 ENST00000592068.5 upstream downstream mismatches(2) CCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTaGAGCAGGAACCGCCCCTTCATGCAGGAACaACATCAAATCAAGCTGC...ATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|GCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGtATGTCtCCTCCCCCATCAATGAGCGGGAcGTGGAGAGCAG IAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|gSSPWLCHLQQQWREPPGRRGPLLPvClLPHQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8577 ENSG00000251574::DCAF10 ENSG00000251574.8::ENSG00000122741.16 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251574 ENSG00000251574.8 lncRNA - - chr5:104383298-105392970:- chr5:104886858:- chr5:103718999-104728671:- chr5:104222559:- DCAF10 ENSG00000122741.16 protein_coding + + chr9:37800554-37867666:+ chr9:37842089:+ chr9:37800551-37867663:+ chr9:37842086:+ chr5:104652656 chr9:37837628 NA NA chr5:103988357 chr9:37837625 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |WD_domain__G-beta_repeat(77%) |WD40(0%) 0 2 2 103 78 ENST00000503650.1 ENST00000242323.8 upstream upstream none CACTATCCCTAGATGTAGTGATATG___GGGTTTAGATAGCTCATGGTTCTGCTGGTTAGGAAGTTCAAGCGCAAGGCCCTGACTTCTGGTAAGTGCTTTCATGCTGCATCAACACGACTAAGAAGGTCAAAGAAGAAGTGGACAT|ATTTCTTGATAACCGGCTGTTTGCTACCTGCTCTGATGACACTACAATAGCACTATGGGATCTGAGAAAATTGAACACCAAAGTATGCACTTTACATGGTCACACTAGCTGGGTGAAGAACATCGAATATGATACTAATACAAGACTCTTAGTAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8579 ZNF462::LINC01505 ENSG00000148143.13::ENSG00000234323.10 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1510 TRUE 595 ZNF462 ENSG00000148143.13 protein_coding + + chr9:106863166-107013634:+ chr9:106863355:+ chr9:109625447-109775915:+ chr9:109625636:+ LINC01505 ENSG00000234323.10 lncRNA + + chr9:105993310-106740875:+ chr9:106558472:+ chr9:108755591-109503156:+ chr9:109320753:+ chr9:106877853 chr9:106450743 NA NA chr9:109640134 chr9:109213024 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 2 0 31 14 ENST00000277225.10 ENST00000665889.1 downstream upstream none GGAGAAAGAGAAAGAGGATAAGGAGGCGGTGGGGCTGGAGAACCCGAAGCACCTCCCGGCGCCGGGACGCTTCTTCT|GGAGTGGCAAATCAAAGGCATTGCAGCCTCTTTCATCACTGCCGATTGCTGATGCCAACCATGTGCCAAGTGCTTAATACGTCACCTTAAATCTTCTCATCCACCCTCAGAG___GGGGTGGGGCCAAGATGGCTGACTAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-8081 chr9:106600928-106601022:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8580 ZNF462::LINC01505 ENSG00000148143.13::ENSG00000234323.10 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1510 TRUE 595 ZNF462 ENSG00000148143.13 protein_coding + + chr9:106863166-107013634:+ chr9:106863355:+ chr9:109625447-109775915:+ chr9:109625636:+ LINC01505 ENSG00000234323.10 lncRNA + + chr9:105993310-106740875:+ chr9:106500357:+ chr9:108755591-109503156:+ chr9:109262638:+ chr9:106877853 chr9:106450743 NA NA chr9:109640134 chr9:109213024 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 0 31 8 ENST00000277225.10 ENST00000435485.5 downstream upstream none GCGGTGGGGCTGGAGAACCCGAAGCACCTCCCGGCGCCGGGACGCTTCTTCT|GTGATACATCACAGGGGCTCATGAATGTGTCTTAAGCTGGGcCATTGAA...CTGCAGCATCAACCCAGTGCCCTGACTTTCAAGACGACTATGAAAACtCCCCAACTGCTGCTAAATTACCAGCAACAAGGATCTG___ACATTCTTATTCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-8081 chr9:106600928-106601022:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8581 TOX2::ENSG00000287231 ENSG00000124191.18::ENSG00000287231.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOX2 ENSG00000124191.18 protein_coding + + chr20:43914852-44069616:+ chr20:43973432:+ chr20:42543492-42698256:+ chr20:42602072:+ ENSG00000287231 ENSG00000287231.1 lncRNA - + chr10:111787233-111989909:- chr10:111976142:+ chr10:113546991-113749667:- chr10:113735900:+ chr20:44000485,chr20:44000485,chr20:44000481 chr10:111974360,chr10:111974378,chr10:111974354 NA NA chr20:42629125,chr20:42629125,chr20:42629121 chr10:113734118,chr10:113734136,chr10:113734112 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 2 0 4 2 ENST00000341197.9 unknown downstream upstream none GTTTGATGGTGACAGTGCCTACGTGGGGATGAGTGACGGAAACCCAGAGCTCCTGTCAACCAGCCAG|GACAGCCCTGCTCACAGCTCCTTTTCATCAAACTTCCAGAGAAGAAATGACAAGTCATGAAGGATGCCAGAACGTGAGGAGGAGAGAGAGAGTGTCTTTTGTATGCTGAAAAATTTCACAGCTACCAATTAAATGTG FDGDSAYVGMSDGNPELLSTSQ|dspahssfssnfqrrndks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8582 ROR2::ANKRD20A7P ENSG00000169071.15::ENSG00000236816.5 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROR2 ENSG00000169071.15 protein_coding - - chr9:91563091-91950228:- chr9:91756071:- chr9:94325373-94712510:- chr9:94518353:- ANKRD20A7P ENSG00000236816.5 transcribed_unprocessed_pseudogene + + chr9:42852675-42920095:+ chr9:42911604:+ chr9:44051024-44118444:+ chr9:44118444:+ chr9:91738129 chr9:42904279 NA NA chr9:94500411 chr9:44066840 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Immunoglobulin_I-set_domain(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%)| 0 1 2 20 4 ENST00000375715.5 ENST00000402318.3 upstream upstream none GCACAGCCCAAATCATAACTTTCA|GAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATAATATGGCTTCACTAAATAAGAAAGAACTCACACTTAAAGATGTGGAATGTAAATTCTCAGAAATGAAAACTGCTTATGAAGAGATTACAACCGAATTAGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAAT HSPNHNFq|nkhnmknn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase transmembrane receptor ROR2 TK Ror Q01974 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8583 ROR2::ENSG00000291166 ENSG00000169071.15::ENSG00000291166.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROR2 ENSG00000169071.15 protein_coding - - chr9:91563091-91950228:- chr9:91756071:- chr9:94325373-94712510:- chr9:94518353:- ENSG00000291166 ENSG00000291166.1 lncRNA + + chr9:42830337-42950985:+ chr9:42911604:+ chr9:44020134-44140782:+ chr9:44140782:+ chr9:91738129 chr9:42904279 NA NA chr9:94500411 chr9:44066840 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Immunoglobulin_I-set_domain(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%)| 0 1 2 20 4 ENST00000375715.5 ENST00000668653.1 upstream upstream none GCACAGCCCAAATCATAACTTTCA|GAACAAGCACAATATGAAAAACAATTAGAGCAGTTAAACAAGGATAATATGGCTTCACTAAATAAGAAAGAACTCACACTTAAAGATGTGGAATGTAAATTCTCAGAAATGAAAACTGCTTATGAAGAGATTACAACCGAATTAGAAGAATATAAGGAAGCCTTTGCAGCAGCATTGAAAGCTAACAAT HSPNHNFq|nkhnmknn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase transmembrane receptor ROR2 TK Ror Q01974 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8584 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1511 TRUE 596 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11038603:- chrX:10865697-11129340:- chrX:11056723:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10584027:- chrX:10413350-10851773:- chrX:10552067:- chrX:10883033,chrX:10883036 chrX:10731663,chrX:10731663 NA NA chrX:10901153,chrX:10901156 chrX:10699703,chrX:10699703 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 0 1 2 4 41 ENST00000669054.1 ENST00000707198.1 upstream downstream none GTAGAAGCCTGCACAGTCCACAGAACT|ATGGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCTGCTCACCGCAACCTCTGCCGCCCGG...TTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTAATGTCGTGATCCcCCCGCCTCAGCCTCCCAAAGTTCTGGGTTTACAGGCGTGAGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8585 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1511 TRUE 596 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10584027:- chrX:10413350-10851773:- chrX:10552067:- chrX:10883033,chrX:10883036 chrX:10731663,chrX:10731663 NA NA chrX:10901153,chrX:10901156 chrX:10699703,chrX:10699703 NA NA sense sense unknown exon/splice-site exon/splice-site deletion low none |B-box_zinc_finger(100%),Fibronectin_type_III_domain(100%),RING-type_zinc-finger(100%),SPRY-associated_domain(100%),SPRY_domain(100%),TRIM_C-terminal_subgroup_One_Signature_domain(100%) |COS(100%),PRY(100%),SPRY(100%),fn3(100%),zf-B_box(100%),zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_UBOX(100%) 0 0 1 35 41 ENST00000669054.1 ENST00000707198.1 upstream downstream mismappers(1) CAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG|ATGGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8587 ANK3::SLC24A3 ENSG00000151150.22::ENSG00000185052.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60615186:- chr10:61786056-62493248:- chr10:62374944:- SLC24A3 ENSG00000185052.13 protein_coding + + chr20:19212642-19722926:+ chr20:19515488:+ chr20:19193286-19703570:+ chr20:19496132:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Sodium/calcium_exchanger_protein(100%) |Na_Ca_ex(100%) 0 1 2 113 73 ENST00000373827.6 ENST00000328041.11 upstream upstream none CTCCGCTCCTGCCCAG___GGTGGCTTTGGATCAGATTATTCACGAAGCTCTAGAAAG|CCCTGCATGAATTCCCCAATGACATCTTCACAAACGAGGATAGAAGACAAGGTGCGGTGGTCCTCCATGTGCTCTGT___GCCATATACATGTTCTATGCaCgGGCCATTGTGTGTGATGACTTCTTCGTCCCTTCCTTGGAA SAPAQGGFGSDYSRSSRK|pcmnspmtssqtriedkvrwssmcsvpytcsmhgplcvmtssslpw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8588 ENSG00000255872::ENSG00000251574 ENSG00000255872.3::ENSG00000251574.8 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255872 ENSG00000255872.3 protein_coding - - chr9:37588413-38068687:- chr9:37899829:- chr9:37588410-38068684:- chr9:37899826:- ENSG00000251574 ENSG00000251574.8 lncRNA - + chr5:104383298-105392970:- chr5:104824144:+ chr5:103718999-104728671:- chr5:104159845:+ chr9:37837628 chr5:104652656 NA NA chr9:37837625 chr5:103988357 NA NA sense antisense unknown 3'UTR/splice-site intron translocation/5'-5' high none none SH2(100%)| 1 0 2 280 9 ENST00000540557.1 unknown upstream upstream none CGGCTCGCTAGCCGTCCTGCGGGACGCCGGCGCTGATGG___GAAATCCAGTTATCAAAATTGACTCAAGAAGAGAGAACCTAACAGAACAATAACAATGGAAGAAATTGGGAACATTATCACAAAGCTATCATCCTGCCAAACTCCAGGCTCAGATGTCACAG|GTCAAGAGGAGCAGGGAATAGGGGAAcACAGTGACAAAGACGGCTCCAGGAAGAGAAAAGAGCAAAAAAACACCCTTAGATGTAATGTTCTAGAACAATGGAGAAGATGTGGACTTGAAACACAGTCTTCAAACTGCCTTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8596 FXR1::SOX2-OT ENSG00000114416.19::ENSG00000242808.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1513 TRUE 597 FXR1 ENSG00000114416.19 protein_coding + + chr3:180868141-180982753:+ chr3:180963090:+ chr3:180585929-180700541:+ chr3:180680878:+ SOX2-OT ENSG00000242808.12 lncRNA + + chr3:180989762-181836880:+ chr3:181056697:+ chr3:180707550-181554668:+ chr3:180774485:+ chr3:180964032,chr3:180964031 chr3:181044850,chr3:181044846 NA NA chr3:180681820,chr3:180681819 chr3:180762638,chr3:180762634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(44%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)| Agenet(100%),FXMRP1_C_core(23%),KH_1(100%),KH_9(100%),Tudor_FRX1(100%)| 8 12 13 865 46 ENST00000698793.1 ENST00000626948.3 downstream upstream duplicates(2),low_entropy(1),mismatches(3) AAGAC___GGTATGGTTCCATTTGTATTTGTTGGCACTAAAGAAAGCATTGGAAATGTGCAGGTTCTTCTAGAGTATCATATTGCCTATCTAAAG___GAAGTAGAACAGCTAAGAATGGAACGCCTACAGATTGATGAACAGCTGCGACAGATTG___...GGTTCTAGGTCTTATAGCGGAAGAGGCAGAGGTCGTCGGGGACCTAATTACACCTCCGGTTATG|CCGCAGAGAGAAGAAGCTGCCCAAGAATGGAAAGGAAGAAATATATCACATCATCTGTCTGTCCACAGGCTTTCCTTGGGGCTTATGAAG___TGAATGAAGGAGGGAAGAAAGGAGAGACAGAGAAAATATGG___ATTTCCT GSRSYSGRGRGRRGPNYTSGY|aaerrscprmerkkyitssvcpqaflgayevneggkkgetekiwis NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8597 FXR1::SOX2-OT ENSG00000114416.19::ENSG00000242808.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1513 TRUE 597 FXR1 ENSG00000114416.19 protein_coding + + chr3:180868141-180982753:+ chr3:180963090:+ chr3:180585929-180700541:+ chr3:180680878:+ SOX2-OT ENSG00000242808.12 lncRNA + + chr3:180989762-181836880:+ chr3:181088877:+ chr3:180707550-181554668:+ chr3:180806665:+ chr3:180964032,chr3:180964031 chr3:181044850,chr3:181044846 NA NA chr3:180681820,chr3:180681819 chr3:180762638,chr3:180762634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(44%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)| Agenet(100%),FXMRP1_C_core(23%),KH_1(100%),KH_9(100%),Tudor_FRX1(100%)| 3 8 8 865 60 ENST00000357559.9 ENST00000626948.3 downstream upstream low_entropy(1) TGCAGGTTCTTCTAGAGTATCATATTGCCTATCTAAAG___GAAGTAGAACAGCTAAGAATGGAACGCCTACAGATTGATGAACAGCTGCGACAGATTG___GTTCTAGGTCTTATAGCGGAAGAGGCAGAGGTCGTCGGGGACCTAATTACACCTCCGGTTATG|TGAATGAAGGAGGGAAGAAAGGAGAGACAGAGAAAATATGG___ATTTCCTCATGGTTGTGATTCCTCTTCACTCTTTTGAATTTGGAAGGATGGCATACACATCTGAAAAATA QVLLEYHIAYLKEVEQLRMERLQIDEQLRQIGSRSYSGRGRGRRGPNYTSGY|vneggkkgetekiwisswl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8598 FXR1::SOX2-OT ENSG00000114416.19::ENSG00000242808.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1513 TRUE 597 FXR1 ENSG00000114416.19 protein_coding + + chr3:180868141-180982753:+ chr3:180963090:+ chr3:180585929-180700541:+ chr3:180680878:+ SOX2-OT ENSG00000242808.12 lncRNA + + chr3:180989762-181836880:+ chr3:181057402:+ chr3:180707550-181554668:+ chr3:180775190:+ chr3:180964032,chr3:180964031 chr3:181044850,chr3:181044846 NA NA chr3:180681820,chr3:180681819 chr3:180762638,chr3:180762634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(44%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)| Agenet(100%),FXMRP1_C_core(23%),KH_1(100%),KH_9(100%),Tudor_FRX1(100%)| 0 1 9 865 1 ENST00000357559.9 ENST00000643667.1 downstream upstream none TGTGCAGGTTCTTCTAGAGTATCATATTGCCTATCTAAAG___GAAGTAGAACAGCTAAGAATGGAACGCCTACAGATTGATGAACAGCTGCGACAGATTG___GTTCTAGGTCTTATAGCGGAAGAGGCAGAGGTCGTCGGGGACCTAATTACACCTCCGGTTATG|ATTTTGACATTACTGAAATTATTGGAATTACTTTGAGGAACTTTGCCTGTTGAGTGTCTTA...CATAAGAACTTTTCCCATTTGCAGGTGAAATTTGTATTTGTTTATGAAAATAATTGATTGGATTGAAACAACATCGGAATTCAGTTGGCTTTTAGTTTGTA VQVLLEYHIAYLKEVEQLRMERLQIDEQLRQIGSRSYSGRGRGRRGPNYTSGY|dfditeiigitlrnfac* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8599 FXR1::SOX2-OT ENSG00000114416.19::ENSG00000242808.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 1513 TRUE 597 FXR1 ENSG00000114416.19 protein_coding + + chr3:180868141-180982753:+ chr3:180912736:+ chr3:180585929-180700541:+ chr3:180630524:+ SOX2-OT ENSG00000242808.12 lncRNA + + chr3:180989762-181836880:+ chr3:181175514:+ chr3:180707550-181554668:+ chr3:180893302:+ chr3:180964032,chr3:180964031 chr3:181044850,chr3:181044846 NA NA chr3:180681820,chr3:180681819 chr3:180762638,chr3:180762634 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Fragile_X_mental_retardation_Tudor_domain(27%)| Agenet(0%),Tudor_FRX1(0%)| 0 0 0 594 17 ENST00000357559.9 ENST00000626948.3 downstream upstream mismatches(2) GGGCTTTCTACAAG|ATTTCCTCATGGTTGTGATTCCTCTTCACTCTTTTGAATTTGGAAGGATGGCATACACATCTGAAAAATA___CCACTACTTCCTTCATT...TCTGACATGCCAGAAGCCGCTAGAAAAAGAAGTTTGACATTCAGAAACTTATCAAGAGGTTCTACTCTTTGGATAGAGACCAAAATCATACTTTGAA___AAAG AFYK|isswl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8600 CALM1::NRDE2 ENSG00000198668.14::ENSG00000119720.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CALM1 ENSG00000198668.14 protein_coding + + chr14:90396502-90408268:+ chr14:90397233:+ chr14:90862846-90874612:+ chr14:90863577:+ NRDE2 ENSG00000119720.18 protein_coding - + chr14:90267860-90331969:- chr14:90328821:+ chr14:90734204-90798313:- chr14:90795165:+ chr14:90398754,chr14:90398755 chr14:90310325,chr14:90310323 NA NA chr14:90865098,chr14:90865099 chr14:90776669,chr14:90776667 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 11 3 10 4149 28 ENST00000356978.9 unknown downstream upstream duplicates(1),mismatches(4) CTGGGAGTGTCGTGGACGCCGTGCCGTTACTCGTAGTCAGGCGGCGGCGCAGGCGGCGGCGGCGGCATAGCGCACAGCGCGCCTTAGCAGCAGCAGCAGCAGCAGCaGCATCGGAGGTACCCCCGCCGTCGCAGCCCCCGCGCTGGTGCAGCCACCCTCGCTCCCTCTGCTCTTCCTCCCTTCGCTCGCACCATG|ATCGATCACATGGAATGAAGGAGAGGAAGAAACCGATTTATACTGAAAGAGACCTAAGGCATATATCCACAAAATGCAATGTTGGCTGTATTTTGGAAATTGACTTGGACAATCCAACTGTAAAATCCCATTTTTGAAACATCTCGTGAAATTTGAACACTGACTG___GGTTTCCTCGAGATGTCGAGTATCAT M|idhme* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8601 HNRNPUL1::ENSG00000285016 ENSG00000105323.18::ENSG00000285016.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNRNPUL1 ENSG00000105323.18 protein_coding + + chr19:41262496-41307787:+ chr19:41268345:+ chr19:41768401-41813692:+ chr19:41774250:+ ENSG00000285016 ENSG00000285016.1 lncRNA - + chr2:111429324-111699033:- chr2:111628069:+ chr2:112186901-112456610:- chr2:112385646:+ chr19:41271216,chr19:41271217 chr2:111627973,chr2:111627971 NA NA chr19:41777121,chr19:41777122 chr2:112385550,chr2:112385548 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none SAP_domain(100%)| SAP(100%)| 5 4 6 2763 10 ENST00000352456.7 unknown downstream upstream mismappers(1) ATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGAGCAGCAGCAGGCCTATCGTCCAG|GTGAGCTCCCCTACACAAGTTTTCTCTTGCCTGCTGCCATATAAGATGTGACTTTGCTCCTTATTCACCATACGCCATGATTATGAGGCCTCCCCAGCCATGTGGAACTGT MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRP|gelpytsfllpaai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8602 HNRNPUL1::ANAPC1 ENSG00000105323.18::ENSG00000153107.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNRNPUL1 ENSG00000105323.18 protein_coding + + chr19:41262496-41307787:+ chr19:41268345:+ chr19:41768401-41813692:+ chr19:41774250:+ ANAPC1 ENSG00000153107.13 protein_coding - + chr2:111611639-111884690:- chr2:111628069:+ chr2:112369216-112642267:- chr2:112385646:+ chr19:41271216,chr19:41271217 chr2:111627973,chr2:111627971 NA NA chr19:41777121,chr19:41777122 chr2:112385550,chr2:112385548 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none SAP_domain(100%)| SAP(100%)| 5 4 6 2763 10 ENST00000352456.7 unknown downstream upstream mismappers(1) ATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGAGCAGCAGCAGGCCTATCGTCCAG|GTGAGCTCCCCTACACAAGTTTTCTCTTGCCTGCTGCCATATAAGATGTGACTTTGCTCCTTATTCACCATACGCCATGATTATGAGGCCTCCCCAGCCATGTGGAACTGT MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRP|gelpytsfllpaai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8606 HNRNPUL1::ENSG00000280878 ENSG00000105323.18::ENSG00000280878.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNRNPUL1 ENSG00000105323.18 protein_coding + + chr19:41262496-41307787:+ chr19:41268345:+ chr19:41768401-41813692:+ chr19:41774250:+ ENSG00000280878 ENSG00000280878.1 lncRNA + + chr2:111468810-111637967:+ chr2:111628069:+ chr2:112226387-112395544:+ chr2:112385646:+ chr19:41271216,chr19:41271217 chr2:111627973,chr2:111627971 NA NA chr19:41777121,chr19:41777122 chr2:112385550,chr2:112385548 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none SAP_domain(100%)| SAP(100%)| 5 3 4 2763 10 ENST00000352456.7 unknown downstream upstream none ATGCCATGGACAATATTACCAGGCAGAACCAATTCTACGATACCCAAGTCATCAAACAAGAAAACGAGTCAGGCTACGAGAGGAGACCACTGGAAATGGAGCAGCAGCAGGCCTATCGTCCAG|GTGAGCTCCCCTACACAAGTTTTCTCTTGCCTGCTGCCATATAAGATGTGACTTTGCTCCTTATTCACCATACGCCATGATTATGAGGCCTCCCCAGCCATGTGGAACTGT MDNITRQNQFYDTQVIKQENESGYERRPLEMEQQQAYRP|gelpytsfllpaai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8607 VMP1::RPS6KB1 ENSG00000062716.13::ENSG00000108443.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817773:+ chr17:57784553-57919616:+ chr17:57895134:+ RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59926435:+ chr17:57970407-58027935:+ chr17:58003796:+ chr17:59825866,chr17:59825863 chr17:59916441,chr17:59916424 NA NA chr17:57903227,chr17:57903224 chr17:57993802,chr17:57993785 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none SNARE_associated_Golgi_protein(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(85%) |Kinase-like(100%),PK_Tyr_Ser-Thr(41%),Pkinase(42%),Pkinase_C(100%) 4 5 2 229 247 ENST00000262291.9 ENST00000225577.9 downstream upstream duplicates(4),mismatches(1) GTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG|GCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGG GHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIg|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8613 LIN7A::SCARB1 ENSG00000111052.8::ENSG00000073060.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LIN7A ENSG00000111052.8 protein_coding - - chr12:80792520-80937934:- chr12:80889251:- chr12:81186299-81331713:- chr12:81283030:- SCARB1 ENSG00000073060.17 protein_coding - - chr12:124776856-124882668:- chr12:124817707:- chr12:125261402-125367214:- chr12:125302253:- chr12:80865531,chr12:80865535 chr12:124852131,chr12:124852132 NA NA chr12:81259310,chr12:81259314 chr12:125336677,chr12:125336678 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none L27_domain(72%)|CD36_family(94%) L27(0%)|CD36(43%) 1 2 4 22 888 ENST00000552864.6 ENST00000339570.9 upstream downstream none CCAATCTCCTCCTTTTTTTCTCACTACGAGCGGTTGCTGATGCTGAAGCCGAGCGTCACTTCGGCTCCCACGGCAGACATGGCGACATTGACAGTGGTCCAGCCGCTCACCCTGGACAGAG___ATGTTGCAAGAGCAATTGAATTACTGGAAAAACTACAGGAATCTGGAGAAGTACCAGTGCACAAGCTACAATCCCTCAAAAAAGTGCTTCAGAGTGAGTTTTGTACAGCTATTCGAGAG|AACGTGCGCATCGACCCCAGTAGCCTGTCCTT...AGGAGATCCCTATCCCCTTCTATCTCTCCGTCTACTTCTTTGACGTCATGAACCCCAGCGAGATCCTGAAGGGCGAGAAGCCGCAGGTGCGGGAGCGCGGGCCCTACGTGTACAG___GGAGTTCAGGCACAAAAGCAACATCAC...TTG___GGTGCGGCGGTGATGATGGAGAATAAGCCCATGACCCTGAAGCTCATCATGACCTTGGCATTCACCACCCTCGGCGAACGTGCCTTCATGAACCGCAC MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIRE|NVRIDPSSLS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-618 chr12:80935736-80935833:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8614 SLC35A1::ENSG00000213204 ENSG00000164414.19::ENSG00000213204.8 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC35A1 ENSG00000164414.19 protein_coding + + chr6:87470623-87512336:+ chr6:87501310:+ chr6:88180341-88222054:+ chr6:88211028:+ ENSG00000213204 ENSG00000213204.8 protein_coding + - chr6:87408012-87511634:+ chr6:87474051:- chr6:88117730-88221352:+ chr6:88183769:- chr6:87503723 chr6:87478512 NA NA chr6:88213441 chr6:88188230 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none Nucleotide-sugar_transporter(52%)| Nuc_sug_transp(70%),UAA(1%)| 3 3 1 119 5 ENST00000369556.7 unknown downstream downstream none GTAGATTCAAAGCATCTTTAAGAGAAAATGTCTTGGGGAGCCCCAAGGAACTGTTGAAGTTAAGTGTGCCATCGTTAGTGTATGCTGTTCAGAACAACATGGCTTTCCTAGCTCTTAGCAATCTGGATGCAGCAGTGTACCAG___GTGACCTACCAGTTGAAGATTCCGTGTACTGCTTTATGCACTGTTTTAATGTTAAACCGGACACTCAGCAAATTACAGTGGGTTTCAGTTTTTATGCTGTGTGCTGGAGTTACGCTTGTACAGTGGAAACCAGCCCAAGCTACAAAAGTGGTG|GCTTTTAAGATTGGACTTATTTGAAATGAAACAGAAAGAAGACATAAGAGAAGCATATGCAACTAAAGACAATGCCCCTGGGCAGGGCCTGATGAGAAACATGGACCCCGCAACAGGGAAAATAACTTGAAACCCAC RFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQATKVV|afkigli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8615 ENSG00000213204::SLC35A1 ENSG00000213204.8::ENSG00000164414.19 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000213204 ENSG00000213204.8 protein_coding + + chr6:87408012-87511634:+ chr6:87501310:+ chr6:88117730-88221352:+ chr6:88211028:+ SLC35A1 ENSG00000164414.19 protein_coding + - chr6:87470623-87512336:+ chr6:87474051:- chr6:88180341-88222054:+ chr6:88183769:- chr6:87503723 chr6:87478512 NA NA chr6:88213441 chr6:88188230 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none FAP206(100%),Nuc_sug_transp(70%),UAA(1%)| 3 3 1 119 5 ENST00000506888.5 unknown downstream downstream none GTAGATTCAAAGCATCTTTAAGAGAAAATGTCTTGGGGAGCCCCAAGGAACTGTTGAAGTTAAGTGTGCCATCGTTAGTGTATGCTGTTCAGAACAACATGGCTTTCCTAGCTCTTAGCAATCTGGATGCAGCAGTGTACCAG___GTGACCTACCAGTTGAAGATTCCGTGTACTGCTTTATGCACTGTTTTAATGTTAAACCGGACACTCAGCAAATTACAGTGGGTTTCAGTTTTTATGCTGTGTGCTGGAGTTACGCTTGTACAGTGGAAACCAGCCCAAGCTACAAAAGTGGTG|GCTTTTAAGATTGGACTTATTTGAAATGAAACAGAAAGAAGACATAAGAGAAGCATATGCAACTAAAGACAATGCCCCTGGGCAGGGCCTGATGAGAAACATGGACCCCGCAACAGGGAAAATAACTTGAAACCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8621 ARHGAP26::STIP1 ENSG00000145819.18::ENSG00000168439.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ARHGAP26 ENSG00000145819.18 protein_coding + + chr5:142770377-143229011:+ chr5:142770915:+ chr5:142149942-142608576:+ chr5:142150480:+ STIP1 ENSG00000168439.17 protein_coding + + chr11:64185272-64204543:+ chr11:64199940:+ chr11:63952744-63972015:+ chr11:63967412:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none BAR_domain_of_APPL_family(18%)|STI1_domain(50%),TPR_repeat(51%),Tetratricopeptide_repeat(34%) BAR_3(0%)|STI1(29%),TPR_1(93%),TPR_11(49%),TPR_16(45%),TPR_2(78%),TPR_3(100%),TPR_8(31%) 1 2 1 8 2519 ENST00000274498.9 ENST00000358794.9 downstream upstream none CGCACTTCCGAGAGACGCTCAAGTCGCACGAAGCAGAGCTGGACAAGACCAACAAATTCATCAAGGAGCTCATCAAGGACGGGAAGTCACTCATAAGCGCGCTCAAGA|GCAGAGAAAATCCTGAAGGAGCAAGAGCGGCTGGCCTACATAAACCCCGACCTGGCTTTGGAGGAGAAGAACAAAGGCAAC...CCAAACTCCTGGAGTTCCAGCTGGCACTCAAG___GACTGTGAGGAATGTATCCAGCTGGAGCCGACCTTCA___TCAAGGGTTATACACGGAAAGCCGCTGCGCTG HFRETLKSHEAELDKTNKFIKELIKDGKSLISALK|srenpegaraaglhkprpgfggeeqrq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 26 1 Yes AML, MDS leukaemia_lymphoma TSG, fusion translocation, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 8629 ENSG00000285006::ENSG00000258603 ENSG00000285006.1::ENSG00000258603.5 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285006 ENSG00000285006.1 lncRNA - - chr14:73366897-73463642:- chr14:73409936:- chr14:73833605-73930348:- chr14:73876644:- ENSG00000258603 ENSG00000258603.5 lncRNA - - chr14:73555115-73634436:- chr14:73609423:- chr14:74021819-74101139:- chr14:74076127:- chr14:73384190,chr14:73384200 chr14:73613388,chr14:73613250 NA NA chr14:73850898,chr14:73850908 chr14:74080092,chr14:74079954 NA NA sense sense unknown intron intron duplication medium none none none 0 1 1 524 6 ENST00000556700.5 unknown upstream downstream mismappers(1),mismatches(1) GGGGCAGCGGCAG___ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCAGTGCAGCCACTGTTACAATTCAAGATCTTGATCTATATCCATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAAG|CTACTGGCCCAATGATGTTTCTTGTACCCAGGGGTGATATGCAGGAGCACCCCCAGCATGCCCAATGTCCAGGATCCCATCATCTGCCAGCTTTCCAG___CACTTTTTGTTGCCGC...AGGACATGTTTGtTcCCCCTTCTGCCATGATTGTAAGTTTCCTGAGGCCTCCTCAGCCAcGCTGAACTGTGAGTCAATTAAATCTCTTTCCTTCGTAAATT...GGAGGCCAAGGCAGGCACATCATGAGGTCAAGAGATCTGGACCATCCTGGCCAAAATGGTGAAACCCTGTCTCTACTAAAAATACAAAAgTTAGCcGGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8632 DPH6-DT::ENSG00000259639 ENSG00000248079.4::ENSG00000259639.6 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPH6-DT ENSG00000248079.4 lncRNA + + chr15:35546154-35860199:+ chr15:35711889:+ chr15:35838355-36152400:+ chr15:36004090:+ ENSG00000259639 ENSG00000259639.6 lncRNA - + chr15:35939167-36252257:- chr15:36157151:+ chr15:36231368-36544458:- chr15:36449352:+ chr15:35839065,chr15:35839062 chr15:36079570,chr15:36079568 NA NA chr15:36131266,chr15:36131263 chr15:36371771,chr15:36371769 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' medium none none none 2 0 0 3 3 ENST00000501169.3 unknown downstream upstream none AAATTGGAAGCTTCCTCAAG___GTCTCAGTTTGCTTCATCTCTGGAATGGAGATGGTTTCCTATGTGATCATGAAAATTTCTCCCAGCTCTGAAGACCTTTTATTTTGTAAGAATCATTGTGAAGGTATGGGCTTGGCAAATGAATGGAAAGATGAGCAATGGGAGAGGAgAGAATTGAAGAGGGCTGTGAGGTTTGAAGAATGG|CCTTACAAACAGAAACACATGCCTCTGCCAGTCCCCACATGGGATCCCAGATGAGAAACCTCTCAAGGAGAATAACAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8633 NUMB::ENSG00000258603 ENSG00000133961.21::ENSG00000258603.5 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73409936:- chr14:73741815-73925323:- chr14:73876644:- ENSG00000258603 ENSG00000258603.5 lncRNA - - chr14:73555115-73634436:- chr14:73609423:- chr14:74021819-74101139:- chr14:74076127:- chr14:73384190,chr14:73384200 chr14:73613388,chr14:73613250 NA NA chr14:73850898,chr14:73850908 chr14:74080092,chr14:74079954 NA NA sense sense unknown intron intron duplication medium none none none 0 1 1 524 6 ENST00000554546.5 unknown upstream downstream mismappers(1),mismatches(1) GGGGCAGCGGCAG___ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCAGTGCAGCCACTGTTACAATTCAAGATCTTGATCTATATCCATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAAG|CTACTGGCCCAATGATGTTTCTTGTACCCAGGGGTGATATGCAGGAGCACCCCCAGCATGCCCAATGTCCAGGATCCCATCATCTGCCAGCTTTCCAG___CACTTTTTGTTGCCGC...AGGACATGTTTGtTcCCCCTTCTGCCATGATTGTAAGTTTCCTGAGGCCTCCTCAGCCAcGCTGAACTGTGAGTCAATTAAATCTCTTTCCTTCGTAAATT...GGAGGCCAAGGCAGGCACATCATGAGGTCAAGAGATCTGGACCATCCTGGCCAAAATGGTGAAACCCTGTCTCTACTAAAAATACAAAAgTTAGCcGGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8637 ENSG00000255440::IKZF3 ENSG00000255440.2::ENSG00000161405.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255440 ENSG00000255440.2 lncRNA + + chr11:74398825-74416379:+ chr11:74409195:+ chr11:74109870-74127424:+ chr11:74120240:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39792933:- chr17:37913971-38020565:- chr17:37949186:- chr11:74409823,chr11:74410134,chr11:74409821 chr17:39794703,chr17:39794722,chr17:39794705 NA NA chr11:74120868,chr11:74121179,chr11:74120866 chr17:37950956,chr17:37950975,chr17:37950958 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2HC_2(100%) 0 1 1 1 15 ENST00000662095.1 ENST00000346872.8 downstream downstream none GATAAGTGCTTTTCATAGATAATACTATGGAATTACAGAGGAGGGGCACTTAATCCAGACTGGGAGGGGCATAAAAGGTATCCTTGAAGAAATCATAGCTAAACTTG|ATGATTCAATGAAAGTGAAAGATGAATACAGTGAAA...ATGAGAATGTTTTAAAGTCAGAACCCATGGGAAATGCAGAAGAGCCTGAAATCCCTTACAGCTATTCAAGAGAATATAATGAATATGAAAACATTAAGTTGGAGAGACATGTTGTCTCATTCGATAGTAGCAGGCCAACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548al chr11:74399237-74399333:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 8638 SENP1::ENSG00000257883 ENSG00000079387.15::ENSG00000257883.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SENP1 ENSG00000079387.15 protein_coding - - chr12:48039784-48106079:- chr12:48083591:- chr12:48433567-48499862:- chr12:48477374:- ENSG00000257883 ENSG00000257883.1 lncRNA + - chr12:116661582-116698065:+ chr12:116678315:- chr12:117099387-117135870:+ chr12:117116120:- chr12:48081159 chr12:116697326 NA NA chr12:48474942 chr12:117135131 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 1 0 1 183 3 ENST00000448372.6 unknown upstream downstream none GCGGGAAAGTCAAACCATCACTGCCATGTATCTGCATATGAAAAATCTTTTCCTATTAAACCTGTTCCAAGTCCATCTTGGAGTGGTTCATGTCGTCGAAGTCTcTTGAGCCCCAAGAAAACTCAGAGGCGACATGTTAGTACAGCAGAAGAG|GTACCCTCAAAATATGTACGTCTTATATGTATGGAAAGAAAAAGGAAAGAAAGAAAGAAAGAAA AGKSNHHCHVSAYEKSFPIKPVPSPSWSGSCRRSLLSPKKTQRRHVSTAEE|vpskyvrlicmerkrkerkke NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8647 NPHP3::ACP3 ENSG00000113971.21::ENSG00000014257.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPHP3 ENSG00000113971.21 protein_coding - - chr3:132680609-132722432:- chr3:132708101:- chr3:132399453-132441276:- chr3:132426945:- ACP3 ENSG00000014257.17 protein_coding + - chr3:132317369-132368302:+ chr3:132344442:- chr3:132036213-132087146:+ chr3:132063286:- chr3:132707823,chr3:132707823,chr3:132707832 chr3:132350782,chr3:132350777,chr3:132350788 NA NA chr3:132426667,chr3:132426667,chr3:132426676 chr3:132069626,chr3:132069621,chr3:132069632 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 1 3 2 41 18 ENST00000337331.10 unknown upstream downstream mismappers(5) CTGTGAAGAAGCTTTTCTGAAAAACCCTGAAGGAAAACCTCGATTAATCTTTCATCGTTTGGAAGATGGAAAAGTCAGTTCTGACTCTGTCCAGCAATTGATTGATCAAGTTTCTAATCTAAACAAGACCAGCAAAGCCAAG|AGACATTGTCTTGCTCTGTCACCAAGGCTGGAATGCAGTGGCCATCACAGCTCACTGTAACCTCAAACTCCAGGACTCAAGCAATCCTCCTACCTCAGCCTCCTGAGTAGTTGGGA CEEAFLKNPEGKPRLIFHRLEDGKVSSDSVQQLIDQVSNLNKTSKAK|rhclalsprlecsghhssl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8648 NPHP3-ACAD11::ACP3 ENSG00000274810.4::ENSG00000014257.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPHP3-ACAD11 ENSG00000274810.4 protein_coding - - chr3:132558142-132722459:- chr3:132708101:- chr3:132276986-132441303:- chr3:132426945:- ACP3 ENSG00000014257.17 protein_coding + - chr3:132317369-132368302:+ chr3:132344442:- chr3:132036213-132087146:+ chr3:132063286:- chr3:132707823,chr3:132707823,chr3:132707832 chr3:132350782,chr3:132350777,chr3:132350788 NA NA chr3:132426667,chr3:132426667,chr3:132426676 chr3:132069626,chr3:132069621,chr3:132069632 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 1 3 2 41 18 ENST00000471702.2 unknown upstream downstream mismappers(5) CTGTGAAGAAGCTTTTCTGAAAAACCCTGAAGGAAAACCTCGATTAATCTTTCATCGTTTGGAAGATGGAAAAGTCAGTTCTGACTCTGTCCAGCAATTGATTGATCAAGTTTCTAATCTAAACAAGACCAGCAAAGCCAAG|AGACATTGTCTTGCTCTGTCACCAAGGCTGGAATGCAGTGGCCATCACAGCTCACTGTAACCTCAAACTCCAGGACTCAAGCAATCCTCCTACCTCAGCCTCCTGAGTAGTTGGGA CEEAFLKNPEGKPRLIFHRLEDGKVSSDSVQQLIDQVSNLNKTSKAK|rhclalsprlecsghhssl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8660 CASC19::PCAT1 ENSG00000254166.4::ENSG00000253438.5 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127229130:- chr8:127568568-128431295:+ chr8:128241375:- chr8:127211616,chr8:127211620 chr8:127236253,chr8:127236254 NA NA chr8:128223861,chr8:128223865 chr8:128248498,chr8:128248499 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' low none none none 3 0 0 111 2 ENST00000641912.1 unknown upstream downstream mismatches(1) GATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAAC...CATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|TTTTCAGATGAGGAAACTGACGGGTACCAAGCTTAAATGACTTGACGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8663 NEK11::CPNE4 ENSG00000114670.14::ENSG00000196353.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEK11 ENSG00000114670.14 protein_coding + + chr3:131026850-131350465:+ chr3:131228688:+ chr3:130745694-131069309:+ chr3:130947532:+ CPNE4 ENSG00000196353.13 protein_coding - + chr3:131533555-132285410:- chr3:131769284:+ chr3:131252399-132004254:- chr3:131488128:+ chr3:131235600,chr3:131235599 chr3:131740795,chr3:131740791 NA NA chr3:130954444,chr3:130954443 chr3:131459639,chr3:131459635 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' low none Protein_kinase_domain(100%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 1 1 0 63 3 ENST00000383366.9 unknown downstream upstream none CGCTGATGCATTTGATTCCTATTGTGtAGAGAGTGATGAGGAGGAAGAAGAAATAGCGTTAGAAAGACCAGAGAAAGAAATCAGGAATGAGGGATCCCAGCCTGCTTACAGAACAAACCAACAG|GTTCTGGGAAGATGTGAAGAAAACTCAAGTGCCCGGTTCCCTTCCTCTGAAAAAC ADAFDSYCvESDEEEEEIALERPEKEIRNEGSQPAYRTNQQ|vlgrceenssarfpssek NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase Nek11 Other NEK Q8NG66 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8668 UBE2E1::DAZL ENSG00000170142.12::ENSG00000092345.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 875 TRUE 1518 TRUE 598 UBE2E1 ENSG00000170142.12 protein_coding + + chr3:23805955-23891640:+ chr3:23811510:+ chr3:23847446-23933131:+ chr3:23853001:+ DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16592148:- chr3:16628299-16711813:- chr3:16633655:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ubiquitin-conjugating_enzyme(17%)| UQ_con(4%)| 84 92 164 751 255 ENST00000306627.8 ENST00000399444.7 downstream downstream duplicates(52),mismatches(5) GCCAGCACCAGCTCCTCCTCATCTTCGTCTTCCAACCAGCAAACCGAGAAAGAAACAAACACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAG___AATTCAGAAGGAGCTGGCGGACATCACTTTAGACCCTCCACCTAATTGCAG|AAATCTGTGGACCGAAGCATACAAACGGTGGTATCTTGTCTGTTTAATCCAGAGAACAGACTGAGAAACTCTGTTGTTACTCAAGATGACTACTTCAAG___GATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGATCCTCCTGGCTTATCTAGTTACATGGGAAGTTGCTGGTTTTGAATATTAAGCTAAAAGGTTTCCACT ASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCr|nlwteaykrwylvcliqrtd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8669 UBE2E1::DAZL ENSG00000170142.12::ENSG00000092345.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1518 TRUE 598 UBE2E1 ENSG00000170142.12 protein_coding + + chr3:23805955-23891640:+ chr3:23811510:+ chr3:23847446-23933131:+ chr3:23853001:+ DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16588713:- chr3:16628299-16711813:- chr3:16630220:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ubiquitin-conjugating_enzyme(17%)| UQ_con(4%)| 1 4 55 751 420 ENST00000306627.8 ENST00000399444.7 downstream downstream duplicates(6),mismatches(4) CGAGAAAGAAACAAACACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAG___AATTCAGAAGGAGCTGGCGGACATCACTTTAGACCCTCCACCTAATTGCAG|GATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGATCCTCCTGGCTTATCTAGTTACATGGGAAGTTGCTGGTTTTGAATATTAAGCTAAAAGGTTTCCACTATTATAGAAATTCTGAATTTTGGTAAATCACACTCAAACTTTGTGTATAAGTTGTATTATTAGACTCTCTAGTTTTATCTTAAACTGTTCTTCATTAGATGTTTATTTAGAAACTGGT EKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCr|ikecitleevgqclnlfdppglssymgscwf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8670 UBE2E1::DAZL ENSG00000170142.12::ENSG00000092345.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1518 TRUE 598 UBE2E1 ENSG00000170142.12 protein_coding + + chr3:23805955-23891640:+ chr3:23807421:+ chr3:23847446-23933131:+ chr3:23848912:+ DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16592148:- chr3:16628299-16711813:- chr3:16633655:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Ubiquitin-conjugating_enzyme(6%)| UQ_con(0%)| 0 2 69 702 255 ENST00000306627.8 ENST00000399444.7 downstream downstream duplicates(14),mismatches(2) ATGTCGGATGACGATTCGAGGGCCAGCACCAGCTCCTCCTCATCTTCGTCTTCCAACCAGCAAACCGAGAAAGAAACAAACACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAG|AAATCTGTGGACCGAAGCATACAAACGGTGGTATCTTGTCTGTTTAATCCAGAGAACAGACTGAGAAACTCTGTTGTTACTCAAGATGACTACTTCAAG___GATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGATCCTCCTGGCTTATCTAGTTACATGGGAAGTTGC MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKr|nlwteaykrwylvcliqrtd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8672 PHRF1::ENSG00000289997 ENSG00000070047.13::ENSG00000289997.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1519 TRUE 599 PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:581606:+ chr11:576470-612222:+ chr11:581606:+ ENSG00000289997 ENSG00000289997.1 lncRNA + + chr11:518991-532262:+ chr11:528159:+ chr11:518991-532262:+ chr11:528159:+ chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 59 48 48 617 197 ENST00000264555.10 ENST00000702393.1 downstream upstream duplicates(29),low_entropy(3),mismatches(36) GGCGGCGGCGGCCGGGCCTAGGAGCGACTCTCGGTCGTGCAGCGGCGGCGAGCGCTCGCGAGCGGCTGCGGGACGCGAGGTTTCCGG___AGCTGAGCTCAATGTGCAGCAATGGATGACGACAGCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGGCCCTGCGGACCCGGCAGGTGACTTTG|GCCTCCCTGGATGGATGTTGGGAGAGTTTACGCGTGGCCTTGTGGGATCGCTGTGGCGGACTCTCAGCTATCAGAGGGCTCCATCACTCCATCGTAAGGAGGCAGCTGGTGGCGAGTCCTGAGCAGGGATGTGATCCGACGGGCAGGCGGCGCCCGGGACAGAAGCTGACGTCACACAGGTGAGTCCCCCACCTCCCCACAGGCTTCCTCCACCCCCTCGGCAGCCCAGCAGGGCCTGTCAATCAG MDDDSLDELVARSPGPDGHPQVGPADPAGDF|glpgwmlgeftrglvgslwrtlsyqrapslhrkeaagges* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8673 PHRF1::ENSG00000289997 ENSG00000070047.13::ENSG00000289997.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1519 TRUE 599 PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:581597:+ chr11:576470-612222:+ chr11:581597:+ ENSG00000289997 ENSG00000289997.1 lncRNA + + chr11:518991-532262:+ chr11:528159:+ chr11:518991-532262:+ chr11:528159:+ chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 4 7 43 714 197 ENST00000264555.10 ENST00000702393.1 downstream upstream duplicates(15),mismatches(14) GGCAGAGGCGGCGGCGGCCGGGCCTAGGAGCGACTCTCGGTCGTGCAGCGGCGGCGAGCGCTCGCGAGCGGCTGCGGGACGCGAGGTTTCCGG___AGCTGAGCTCAATGTGCAGCAATGGATGACGACAGCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGGCCCTGCGGACCCGGCAG|GCCTCCCTGGATGGATGTTGGGAGAGTTTACGCGTGGCCTTGTGGGATCGCTGTGGCGGACTCTCAGCTATCAGAGGGCTCCATCACTCCATCGTAAGGAGGCAGCTGGTGGCGAGTCCTGAGCAGGGATGTGATCCGACGGGCAGGCGGCGCCCGGGACAGAAGCTGACGTCACACAG___CCACCCCATGACGTCACC MDDDSLDELVARSPGPDGHPQVGPADPA|glpgwmlgeftrglvgslwrtlsyqrapslhrkeaagges* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8674 PDCD6IP::NEK10 ENSG00000170248.15::ENSG00000163491.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PDCD6IP ENSG00000170248.15 protein_coding + + chr3:33798571-33869707:+ chr3:33798937:+ chr3:33840063-33911199:+ chr3:33840429:+ NEK10 ENSG00000163491.18 protein_coding - + chr3:27106484-27369460:- chr3:27301481:+ chr3:27147975-27410951:- chr3:27342972:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none BRO1-like_domain(17%)| BRO1(0%)| 75 15 48 400 74 ENST00000457054.6 unknown downstream upstream duplicates(18),mismatches(8) CCGCCAGCCCAGTACCTCTCTCTCCTCGGCCCTCGTAAGCTGTCCGCGGTCTGTTTGGCCCGAACGGCGGCGGAGGCGCTGATCATGGCGACATTCATCTCGGTGCAGCTGAAAAAGACCTCAGAGGTGGACCTGGCCAAGCCGCTGGTGAAGTTCATCCAGCAGACTTACCCAAGCGGCGGGGAAGAGCAGGCCCAGTACTGCCGCGCGGCGGAGGAGCTCAGCAAGCTGCGCCGCGCCGCAGTCGGTCGTCCGCTGGACAAGCACGAGGGCGCGCTCGAGACGCTCCTGAG|GTTCAGAACACAGAAGACAAAGAAACATTTGTTGTATCATTCATCTGCAAGTCCAACACTGGGACCAAGAAGTTTCTGGCATCCATGTGGATTTCACTTTACATTTTTGTAAACTTCTAAATTTTGCCTACTTAACACTACTACACTAATCTATGATAGTGAATAATAATACAACACAATAAAT MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRPLDKHEGALETLLr|frtqktkkhllyhssasptlgprsfwhpcgfhftfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8678 LINC01811::LHFPL4 ENSG00000226320.6::ENSG00000156959.9 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01811 ENSG00000226320.6 lncRNA + + chr3:33956972-34677247:+ chr3:34189648:+ chr3:33998464-34718739:+ chr3:34231140:+ LHFPL4 ENSG00000156959.9 protein_coding - - chr3:9498361-9553822:- chr3:9506203:- chr3:9540045-9595506:- chr3:9547887:- chr3:34260342,chr3:34260341 chr3:9547026,chr3:9547027 NA NA chr3:34301834,chr3:34301833 chr3:9588710,chr3:9588711 NA NA sense sense unknown intron CDS/splice-site inversion high none |Lipoma_HMGIC_fusion_partner-like_protein(36%) |L_HMGIC_fpl(0%) 14 15 37 61 371 unknown ENST00000287585.8 downstream downstream duplicates(9),mismappers(1),mismatches(1) CATGACT___ATACATGCTGCTCTGGGAAGGGAATGACCTTGCGTGAAGTGGCTGAAGCTGACCCTGAAGGAGCTGACAGCTGGAGGCTCTGTGCTCACTGTAGTCCGTTCATCTGGGTAGCAGGTCTTCCTTGAAAGGGGATCAAG___GGTTGCTGTTATGGCATATTGATGTGGAGTACAAAAAGTGTCCTTCCTCTAGGTGGGTGCAGCCCTGCAGCCCTGCACCACAGAGCCTGGCTTG|CTCTGTGCCTCGTCCTGGGCTGCATGATCTTTCCTGATGGCTGGGATGCCGAGACCATCCGGGACATGTGTGGGGCCAAGACGGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCATACATCCTGGCCATCATCGGCATCCTCAACGCCCTCATCCTCTCCTTCCTCGCCTTCGTGCTGGGCAACCGGCAAACAGACCTGCTGCAGGAGGAGCTCAAGCCGGAGAACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8679 VHL::CMTM7 ENSG00000134086.9::ENSG00000153551.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA VHL ENSG00000134086.9 protein_coding + + chr3:10141778-10153667:+ chr3:10142187:+ chr3:10183462-10195351:+ chr3:10183871:+ CMTM7 ENSG00000153551.14 protein_coding + - chr3:32391698-32483067:+ chr3:32411217:- chr3:32433190-32524559:+ chr3:32452709:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none VHL_beta_domain(62%)| VHL(1%)| 20 15 30 370 78 ENST00000256474.3 unknown downstream downstream duplicates(10),inconsistently_clipped(1),mismatches(7) ACTGGGACGAGGCCGAGGTAGGCGCGGAGGAGGCAGGCGTCGAAGAGTACGGCCCTGAAGAAGACGGCGGGGAGGAGTCGGGCGCCGAGGAGTCCGGCCCGGAAGAGTCCGGCCCGGAGGAACTGGGCGCCGAGGAGGAGATGGAGGCCGGGCGGCCGCGGCCCGTGCTGCGCTCGGTGAACTCGCGCGAGCCCTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGCACGGGCCGCCGCATCCACAGCTACCGAG|GGAGTGCCTAAAACAATGGTGCCTTCGAGGTGATGAAATACCATCCTTGTTTAGGGTCTTGATTTTCAGCGACAGGGAAGCCGGCTCTGCCTCATTCACAGCTGTATCCCCTGCGGCTGACACAGAGCTGGGACAGAGCAGCCATTCAATAAACATCTGATGAAGTGACTTAAGGTAGCGCCTCTGCCAGGCAAAGGGCCACACCAAATGGCTAACACTCGAGTGAGGAAAGGTATCACAAACTGAGCTTGCCACTTCTG WDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYR|gsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE von Hippel-Lindau syndrome gene 1 Yes renal, haemangioma, pheochromocytoma renal, haemangioma, pheochromocytoma Von Hippel-Lindau syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 8682 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 878 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 16 18 24 67 51 ENST00000669054.1 ENST00000421585.1 upstream upstream duplicates(6),inconsistently_clipped(1),mismappers(1),mismatches(1) AAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8683 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 879 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:10944205:- chrX:10865697-11129340:- chrX:10962325:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 3 3 29 10 51 ENST00000669054.1 ENST00000421585.1 upstream upstream duplicates(8),mismappers(1) CAGAGGCTTCCCTAGAGTGAAGAGCTCTACTATGTATGCTTTATGCGGCAGAAGGAGTGCTTTGGAGGAGTTTTTAAATTTGTTTTTTTTTTAAATCTT...CAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___CTGGGACCATTTAGTTGCAGAAAAACAAGCTCAGGGCGCTCACTGATTCTACATTATG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAGGAGCAAGTGCATGGTGGTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8684 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 880 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11038603:- chrX:10865697-11129340:- chrX:11056723:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 5 0 28 20 51 ENST00000669054.1 ENST00000421585.1 upstream upstream duplicates(8) CTTCGGTGGTGGAGATCCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG___GTAAGTTTCCTGAGGCCTTCCCAGAAGTAGAAGCCTGCACAGTCCACAGAACT|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAGGAGCAAGTGCATGGTGGTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8685 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 881 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 10 3 19 208 51 ENST00000669054.1 ENST00000421585.1 upstream upstream duplicates(4) AAGAAACGTTAGTAGGTGCCCATAACTTCGGTGGTGGAGATCCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG|CTTCTTTAGAAATGGTCCGGGAGAGAGACAGAAGAAGTAAAAGGATGAGGCCATATCCCAGAAGCCAAGAAGGCAGATTCTGTCGAAGAGGGTGACAGGGTGCCCTACACTGTAAAATGCTTCAAACAGATTTAGGAGAGTGAGGACCAAAAAGCTGTGACCTTGACAACCAGAAATTCACAGTGACCTTTGAGGAAACAGTTTTCTCAAGATGTGGAAATGGAAGTCAGAATGCAAAGAGTTGAGGAGCAAGTGCATGGTGGTGAAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8691 LARS2::SGO1-AS1 ENSG00000011376.12::ENSG00000231304.2 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1523 TRUE 601 LARS2 ENSG00000011376.12 protein_coding + + chr3:45388561-45554726:+ chr3:45458886:+ chr3:45430053-45596218:+ chr3:45500378:+ SGO1-AS1 ENSG00000231304.2 lncRNA + + chr3:20174244-21145967:+ chr3:20558358:+ chr3:20215736-21187459:+ chr3:20599850:+ chr3:45460705,chr3:45460705 chr3:20554287,chr3:20554276 NA NA chr3:45502197,chr3:45502197 chr3:20595779,chr3:20595768 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none tRNA_synthetases_class_I_(I__L__M_and_V)(41%)| tRNA-synt_1(74%),tRNA-synt_1g(99%)| 15 15 18 142 28 ENST00000650792.2 unknown downstream upstream duplicates(8),low_entropy(2),mismappers(1) GAAATAACTACGTGTTTGCCAGATTACTACAAGTGGACTCAGTATCTCTTTATTAAACTGTATGAGGCTGGGCTGGCCTATCAAAAGGAG___GCCCTGGTTAACTGGGACCCAGTGGATCAAACAGTGCTTGCCAATGAGCAGGTGGATGAACATGGCTGTTCATGGCGTTCTGGAGCAAAGGTGGAACAGAAGTACCTCAGACAATGGTTTATTAAGACAACCGCTTATGCAAAG|CTGCTGTCATCATTGCTGTATGTGATTGATATGTCTGACTGGACAAATTTGCAACCTGACACTAATGCTGATGAATGGTTCACAGATACTGGATTATTGATAATTTCAGAAAGTGCCCATGGAATTGCATCTAAGGGGCTGGTTTTTCAACTTGCAGATCCATGTCGTGGTAAAACTTATGAGGCAAAATTTCTTTGTGAGAGTTTTGAGTTAAGCCCCATATAAGGTATAGTAAAAATGCA EITTCLPDYYKWTQYLFIKLYEAGLAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK|llssllyvidmsdwtnlqpdtnadewftdtglliisesahgiaskglvfqladpcrgktyeakflcesfelspi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8692 LARS2::SGO1-AS1 ENSG00000011376.12::ENSG00000231304.2 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1523 TRUE 601 LARS2 ENSG00000011376.12 protein_coding + + chr3:45388561-45554726:+ chr3:45458886:+ chr3:45430053-45596218:+ chr3:45500378:+ SGO1-AS1 ENSG00000231304.2 lncRNA + + chr3:20174244-21145967:+ chr3:20699385:+ chr3:20215736-21187459:+ chr3:20740877:+ chr3:45460705,chr3:45460705 chr3:20554287,chr3:20554276 NA NA chr3:45502197,chr3:45502197 chr3:20595779,chr3:20595768 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none tRNA_synthetases_class_I_(I__L__M_and_V)(41%)| tRNA-synt_1(74%),tRNA-synt_1g(99%)| 1 1 2 142 2 ENST00000650792.2 ENST00000634618.1 downstream upstream none CTGAAAATGCCGCAGTCGAGAGGAATCTACATCCACAAAGTTGGACACAAAG___TAATATTAAACACATGAGGAAACAGCTTGATCGTCTGGGCCTGTGTTTC...GGCTGGCCTATCAAAAGGAG___GCCCTGGTTAACTGGGACCCAGTGGATCAAACAGTGCTTGCCAATGAGCAGGTGGATGAACATGGCTGTTCATGGCGTTCTGGAGCAAAGGTGGAACAGAAGTACCTCAGACAATGGTTTATTAAGACAACCGCTTATGCAAAG|GTAAAAAGCAATTTGAAGGGGTGTTCTATACTTTGGCAGAGGAAACCCATTCCCTCTCAAG___GCTGGATTCTGGGAAGTGAACTTATGGAATCAAAG LAYQKEALVNWDPVDQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAK|vksnlkgcsilwqrkpipsqgwilgselmes NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8693 ARHGAP21::KIAA1217 ENSG00000107863.20::ENSG00000120549.19 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP21 ENSG00000107863.20 protein_coding - - chr10:24583609-24723887:- chr10:24666985:- chr10:24872538-25012816:- chr10:24955914:- KIAA1217 ENSG00000120549.19 protein_coding + - chr10:23694746-24547848:+ chr10:24439498:- chr10:23983675-24836777:+ chr10:24728427:- chr10:24641131,chr10:24641135 chr10:24442116,chr10:24442117 NA NA chr10:24930060,chr10:24930064 chr10:24731045,chr10:24731046 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 22 6 14 3 74 ENST00000396432.7 unknown upstream downstream duplicates(5),low_entropy(1),mismappers(2),mismatches(1) GTGAAACTGTATCACTGTCTGAAGATGAAACATTCTCCTGGCCAGGTCCCAAAACAGTTACGTTGAAAAGAACATCTCAAGGCTTTGGTTTTACATTAAGACATTTTATTGTTTATCCCCCAGAGTCTGCAATTCAATTTTCATATAAG___GATGAAGAAAATGGAAACAGAGGAG|CAGCAACAGGAAACTAATATGTACTATCAGGAAGCAGAGACAGCCTCGCTCAGGAACAAAACTGCAGCTCCAAGACAGAACAGTGCCTGGGTTTCTTTGGCAATAAAAG ETVSLSEDETFSWPGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRG|aatgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8697 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 883 TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44510553:- chr3:44533372-44552128:- chr3:44552045:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45838051:- chr3:45864808-45957534:- chr3:45879543:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Leucine_zipper(99%) |Leu_zip(38%) 2 38 0 133 210 ENST00000436261.6 ENST00000418700.6 upstream downstream duplicates(7),mismatches(12) CGCGGGGCGGTCGGCTGCGGTGGCGGCGTTTGGATGATTGTCTCTCGGCGGCGGAGTCG|GCAGAGTTGGGCCTAAATGAGCACCATCAAAATGAAGTTATTAATTATATGCGTTTTGCTCGTTCAAAGAGAGGCTTGAGACTCAAAACTGTAGATTCCTGCTTCCAAGACCTCAAGGAGAGCAG___GCTGGTGGAGGACACCTTCACCATAGATGAAGTCTCTGAAGTCCTCAATGGATTACAAGCTGTGGTTCATAGTGAGGTGGAATCTGAGCTCATCAACACTGCCTATACCAATGTGTTACTTCTGCGACAGCTGTTTGCACAAGCTGAGAAGTGGTATCTTAAGCTACAGACAGACATCTCTGAACTTGAAAACCG___AGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8698 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44502965:- chr3:44533372-44552128:- chr3:44544457:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45838051:- chr3:45864808-45957534:- chr3:45879543:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Leucine_zipper(99%) |Leu_zip(38%) 2 0 3 21 210 ENST00000436261.6 ENST00000296135.11 upstream downstream duplicates(2),mismatches(1) GTTTGGATGATTGTCTCTCGGCGGCGGAGTCG___CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG|GCAGAGTTGGGCCTAAATGAGCACCATCAAAATGAAGTTATTAATTATATGCGTTTTGCTCGTTCAAAG...TCAAGGAGAGCAG___GCTGGTGGAGGACACCTTCACCATAGATGAAGTCTCTGAAGTCCTCAATGGATTACAAGCTGTGGTTCATAGTGAGGTGGAATCTGAG MVRPQ|AELGLNEHHQNEVINYMRFARS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8699 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 884 TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44510553:- chr3:44533372-44552128:- chr3:44552045:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45835784:- chr3:45864808-45957534:- chr3:45877276:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Leucine_zipper(91%) |Leu_zip(30%) 0 9 0 133 191 ENST00000436261.6 ENST00000539217.5 upstream downstream duplicates(1),mismatches(1) GCTGCGGTGGCGGCGTTTGGATGATTGTCTCTCGGCGGCGGAGTCG|GCTGGTGGAGGACACCTTCACCATAGATGAAGTCTCTGAAGTCCTCAATGGATTACAAGCTGTGGTTCATAGTGAGGTGGAATCTGAGCTCATCAACACTGCCTATACCAATGTGTTACTTCTGCGACAGCTGTTTGCACAAGCTGAGAAGTGGTATCTTAAGCTACAGACAGACATCTCTGAACTTGAAAACCG___AGAATTATTAGAACAAGTTGCAGAATTTGAAAAAGCAGAGATTACATCTTCAAACAAAAAG___CCCATCTTAGATGTCACAAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8700 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44510553:- chr3:44533372-44552128:- chr3:44552045:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45838047:- chr3:45864808-45957534:- chr3:45879539:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Leucine_zipper(99%) |Leu_zip(38%) 0 1 0 133 210 ENST00000436261.6 ENST00000445698.1 upstream downstream none CGGCGTTTGGATGATTGTCTCTCGGCGGCGGAGTCG|AGTTGGGCCTAAATGAGCACCATCAAAATGAAGTTATTAATTATATGCGTTTTGCTCGTTCAAAG...GCAG___GCTGGTGGAGGACACCTTCACCATAGATGAAGTCTCTGAAGTCCTCAATGGATTACAAGCTGTGGTTCATAGTGAGGTGGAATCTGAGCTCATCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8706 LRRFIP2::NEK10 ENSG00000093167.18::ENSG00000163491.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 886 TRUE 1527 TRUE 603 LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37174539:- chr3:37094117-37225180:- chr3:37216030:- NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27119868:- chr3:27147975-27410951:- chr3:27161359:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 6 18 4 155 35 ENST00000354379.8 ENST00000691995.1 upstream downstream duplicates(2),mismatches(1) CCGGTTCCCGCTGTCTCAGCCGCGGCGCAGAGGGCACATCGGCCTGACCGACTAGCCGGCTGCCAGTGCCGGGAGCCGCCGCGTCCATCCCCGCCCGCCTG...CTCGCCCATAGCCCCAGCGGGCGCCGGGCGGGCGAGCAGCTCTTCGGCCCTTCCCGGACAGCGACGCAGTCGCAGCGCGCGCCCTAACACAG___ATGTGGGAAGATAAATGAAGGGGTCTAGATGTAAATGTCAGTGGAAAGGAGAGCTACCATCACTAAG|TTATCTCAGGGATCTCCAGAACCGATTGAGCCCAACTTTTTCACAGCAGATTACCATTTATTACATCGTTCATCCGGTGGAAACAGCCTGTCCCCAAATGACCCTACAG___GTTTACCAACCAGCATTGAATTGGAGGAAGGAATAACATATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8707 LRRFIP2::NEK10 ENSG00000093167.18::ENSG00000163491.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1527 TRUE 603 LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37176060:- chr3:37094117-37225180:- chr3:37217551:- NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27119868:- chr3:27147975-27410951:- chr3:27161359:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none none 1 0 1 131 35 ENST00000354379.8 ENST00000691995.1 upstream downstream none CTCCTCCCGGGGCCGGTTCCCGCTGTCTCAGCCGCGGCGCAGAGGGCACATCGGCCTGACCGACTAGCCGGCTGCCAGTGCCGGGAGCCGCCGCGTCCATC...CAGCTGCGCCCCTCGCCCATAGCCCCAGCGGGCGCCGGGCGGGCGAGCAGgTCTTCGGCCCTTCCCGGACAGCGACGCAGTCGCAGCGCGCGCCCTAACACAG|TTATCTCAGGGATCTCCAGAACCGATTGAGCCCAACTTTTTCACAGCAGATTACCATTTAcTACATCGTTCATCtGGTGGAAACAGCCTGTCCCCAAATGACCCTACAG___GTTTACCAACCAGCATTGAATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8708 GPD1L::EDEM1 ENSG00000152642.11::ENSG00000134109.11 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 887 FALSE NA FALSE NA GPD1L ENSG00000152642.11 protein_coding + + chr3:32105689-32168709:+ chr3:32146734:+ chr3:32147181-32210201:+ chr3:32188226:+ EDEM1 ENSG00000134109.11 protein_coding + + chr3:5187646-5219958:+ chr3:5213319:+ chr3:5229331-5261643:+ chr3:5255004:+ chr3:32148823,chr3:32148824 chr3:5212072,chr3:5212070 NA NA chr3:32190315,chr3:32190316 chr3:5253757,chr3:5253755 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none NAD-dependent_glycerol-3-phosphate_dehydrogenase_C-terminus(8%),NAD-dependent_glycerol-3-phosphate_dehydrogenase_N-terminus(100%)|Glycosyl_hydrolase_family_47(5%) NAD_Gly3P_dh_C(0%),NAD_Gly3P_dh_N(100%)|Glyco_hydro_47(0%) 8 8 12 176 134 ENST00000282541.10 ENST00000256497.9 downstream upstream duplicates(5),mismatches(1) GCCAACATTGCCAATGAGGTGGCTGCAGAGAAGTTCTGTGAGACCACCATCG___GCAGCAAAGTAATGGAGAACGGCCTTCTCTTCAAAGAACTTCTGCAGACTCCAAATTTTCGAATTACCGTGGTTGATGATGCAGACACTGTTGAACTCTGTGGTGCGCTTAAG|CTGTTTGATGAAGACAATCCAGTACACAAGTCTGGAACCAGATACATGTTCACAACAGAGGGACACATTGTATCTGTGGATGAGCATCTTCGGGAATTGCCATGGAAGGAATTCTTCTCTGAAGAGGGAGGGCAGGACCAAGGGGGAAAGTCTGTGCACAGGCCGAAACCTCATGAGTTAAAAGTCATCAACTCCAGCTCCAAC___TGCAATCGTGTACCTGATGAGAGGAGG ANIANEVAAEKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELCGALK|LFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFSEEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8709 LRP8::HSPG2 ENSG00000157193.18::ENSG00000142798.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 888 FALSE NA FALSE NA LRP8 ENSG00000157193.18 protein_coding - - chr1:53242364-53328469:- chr1:53250690:- chr1:53708036-53794141:- chr1:53716362:- HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21896310:- chr1:22148737-22263803:- chr1:22222803:- chr1:53249318,chr1:53249320 chr1:21933185,chr1:21933184 NA NA chr1:53714990,chr1:53714992 chr1:22259678,chr1:22259677 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),Low-density_lipoprotein_receptor_repeat_class_B(100%)|EGF-like_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%) EGF_CA(100%),FXa_inhibition(100%),Ldl_recept_a(100%),Ldl_recept_b(100%),cEGF(100%)|EGF(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),Ldl_recept_a(100%),hEGF(100%),ig(100%) 9 8 10 185 24 ENST00000668448.1 ENST00000374695.8 upstream downstream duplicates(5) GATGCCTGTGAGCTGAGTGTCCAGCCTAATGGAGGCTGTGAATACCTGTGCCTTCCTGCTCCTCAGATCTCCAGCCACTCTCCCAAGTACACATGTGCCTG...CCAGCATCAGCCCGTCTACCCTAAGCCCTGCAACCAGCAACCACTCCCAGCACT___ATGCAAATGAAGACAGTAtGATGGGCTCAACAGTCACTGCCGCTGTT...GCCCATAG___TGGTGATAGCCCTCCTGTGCATGAGTGGATACCTGATCTGGAGAAACTGGAAGCGGAAGAACACCAAAAGCATGAATTTTGACAACCCAGTCTACAGGAAAACAACAGAAGAAGAAGACGAAGATGAGCTCCATATAGGGAGAACTGCTCAGATTGGCCATGTCTATCCTGCA|GTGACCCATGGGCTGAGGGCATACGATGGCTTGTCTCTGCCTGAGGACATAGAGACCGTCACAGCAAGCCAAATGCGCTGGACACATTCGTACCTTTCTGATGATGAGGACATGCTGGCTGACAGCATCTCAGGAG___ACGACCTGGGCAGTGGGGACCTGGGCAGCGGGGACTTCCAGA PIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTTEEEDEDELHIGRTAQIGHVYPA|VTHGLRAYDGLSLPEDIETVTASQMRWTHSYLSDDEDMLADSISGDDLGSGDLGSGDFQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8713 ENSG00000242021::PUDP ENSG00000242021.2::ENSG00000130021.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 889 FALSE NA FALSE NA ENSG00000242021 ENSG00000242021.2 lncRNA - - chrX:27042907-27176298:- chrX:27158905:- chrX:27061024-27194415:- chrX:27177022:- PUDP ENSG00000130021.15 protein_coding - - chrX:6667865-7148158:- chrX:7050472:- chrX:6585906-7066199:- chrX:6968513:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Haloacid_dehalogenase-like_hydrolase(13%) |HAD_2(0%),Hydrolase(0%),Hydrolase_like(0%) 5 5 14 73 97 ENST00000436019.2 ENST00000381077.10 upstream downstream duplicates(8),mismappers(16),mismatches(2) CTCAGGGCTAACTGGAGACAGAGCTCAGACTGCAACTGAGAAAAGTTGGACTCCAAAACCTGTACTCTGAG___CTTTACTGCATGAGAAAGTTATTGAAATGTGCCTTGTGACATTCAGAATAAGTGACTTTTCAGAGGTCTCAGAGTCAGTAAGAGACAGAACTCAGATTGTAACCAAGAAGAGCTGAACTCCAAACTTCTGTGTCCGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCGGCAGACCCTCGCG|TGCCTTGTCTTTGAAGATGCTCCCAATGGGGTGGAGGCGGCCCTGGCAGCTGGGATGCAGGTGGTCATGGTTCCTGACGGAAACTTGAGCCGAGATCTGACAACAAAGGCCACCCTGGTGCTGAATTCCCTGCAGGACTTCCAGCCCGAGCTGTTTGGTTTGCCCTCCTATGAGTGAGAGGGAGGGCCTCAGTCTTCCGCCCCCAGCCCACTCTCATGGTCCACACTGCTGGGGGAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8714 TP53::SDK2 ENSG00000141510.18::ENSG00000069188.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TP53 ENSG00000141510.18 protein_coding - - chr17:7661779-7687538:- chr17:7687377:- chr17:7565097-7590856:- chr17:7590695:- SDK2 ENSG00000069188.17 protein_coding - + chr17:73334384-73644445:- chr17:73627361:+ chr17:71330523-71640584:- chr17:71623500:+ chr17:7684202,chr17:7684354,chr17:7684361 chr17:73606838,chr17:73606839,chr17:73606832 NA NA chr17:7587520,chr17:7587672,chr17:7587679 chr17:71602977,chr17:71602978,chr17:71602971 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 5 11 6 120 30 ENST00000635293.1 unknown upstream upstream duplicates(3),mismatches(1) CAAAAGTCTAGAGCCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGG|GTTCAGTCAAATATGGGATGAAAAGGAACACTGTATTCTTAAGACCGCATCTTTCAGCGACGCCTCCTTCCATGTGAG...___CTCAGATACGGGCCCTCAGGGAGGCTCCAGAATCTGGAGCCCAAGGAGGGTGCTGGGAAGAAAGACCACAAGCCCCAGACGCATCTGCCTGTCCCACATGTGCTTAGATGATTCACCGTGGTTTAAGCTGCTGTTTCCCTCCTGACGCTTGCATAGCTTCTATGAGATGGTTGCTGCCCA...GACAGGAGGGGCAAGAGCCTCCTGAAGGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tumor protein p53 1 Yes breast, colorectal, lung, sarcoma, prostate, adrenocortical, glioma, Spitzoid tumour, multiple other tumour types breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types Li-Fraumeni syndrome leukaemia_lymphoma, epithelial, mesenchymal, other oncogene, TSG, fusion missense, nonsense, frameshift, translocation, large_deletion FALSE NA NA NA NA NA NA NA NA NA 8715 PIK3R3::NBL1 ENSG00000117461.15::ENSG00000158747.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46131847:- chr1:46505812-46598708:- chr1:46597519:- NBL1 ENSG00000158747.15 protein_coding + - chr1:19596979-19658456:+ chr1:19649235:- chr1:19923473-19984949:+ chr1:19975729:- chr1:46118823,chr1:46119000,chr1:46119001 chr1:19649493,chr1:19649552,chr1:19649553 NA NA chr1:46584495,chr1:46584672,chr1:46584673 chr1:19975987,chr1:19976046,chr1:19976047 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 11 8 3 531 18 ENST00000262741.10 unknown upstream downstream duplicates(3) GGAAAACCCGAAGTACATTTCCGTGTGGAACTTTTGCAGATATATATTTTTAGATTTTTAAATACCAGATAAAAAATATATGCCTTCTATATATCTCCTGGCGACCTGCCCCTGACAGCGCGATGTACAATACGGTGTGGAGTATGGACCGCGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG|ATGAAGAAACTGAGGCACAGAGAGGCCAAGAAATCTGCTTGGGCTTACACTGTTAGTAAACAGGAGAACCGGGATTTGAACCTGGAGGGTAGCAGGTTAACCCCCAGCTACCCTTGCAGGTCAAAAGGTTCACCGAAGAGAAAG MYNTVWSMDRDDADWREVMMPYSTELIFYIEMDPP|deeteaqrgqeiclglhc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 8716 PIK3R3::MICOS10-NBL1 ENSG00000117461.15::ENSG00000270136.6 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46131847:- chr1:46505812-46598708:- chr1:46597519:- MICOS10-NBL1 ENSG00000270136.6 protein_coding + - chr1:19597067-19656927:+ chr1:19649235:- chr1:19923561-19983420:+ chr1:19975729:- chr1:46118823,chr1:46119000,chr1:46119001 chr1:19649493,chr1:19649552,chr1:19649553 NA NA chr1:46584495,chr1:46584672,chr1:46584673 chr1:19975987,chr1:19976046,chr1:19976047 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 11 8 3 531 18 ENST00000262741.10 unknown upstream downstream duplicates(3) GGAAAACCCGAAGTACATTTCCGTGTGGAACTTTTGCAGATATATATTTTTAGATTTTTAAATACCAGATAAAAAATATATGCCTTCTATATATCTCCTGGCGACCTGCCCCTGACAGCGCGATGTACAATACGGTGTGGAGTATGGACCGCGATGACGCAGACTGGAGGGAGGTGATGATGCCCTATTCGACAGAACTGATATTTTATATTGAAATGGATCCTCCAG|ATGAAGAAACTGAGGCACAGAGAGGCCAAGAAATCTGCTTGGGCTTACACTGTTAGTAAACAGGAGAACCGGGATTTGAACCTGGAGGGTAGCAGGTTAACCCCCAGCTACCCTTGCAGGTCAAAAGGTTCACCGAAGAGAAAG MYNTVWSMDRDDADWREVMMPYSTELIFYIEMDPP|deeteaqrgqeiclglhc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 8721 SACM1L::TRAK1 ENSG00000211456.14::ENSG00000182606.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 891 TRUE 1530 TRUE 604 SACM1L ENSG00000211456.14 protein_coding + + chr3:45689056-45745412:+ chr3:45732151:+ chr3:45730548-45786904:+ chr3:45773643:+ TRAK1 ENSG00000182606.17 protein_coding + + chr3:42013802-42225890:+ chr3:42176814:+ chr3:42055294-42267382:+ chr3:42218306:+ chr3:45734782,chr3:45734778 chr3:42160442,chr3:42160437 NA NA chr3:45776274,chr3:45776270 chr3:42201934,chr3:42201929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SacI_homology_domain(100%)|HAP1_N-terminal_conserved_region(78%),Kinesin_associated_protein(100%) Syja_N(100%)|HAP1_N(26%),Milton(100%) 8 5 6 152 91 ENST00000455997.5 ENST00000673621.2 downstream upstream duplicates(1),mismatches(1) AAACCACTGCCACAGATCAGCAAAGTAGCAAATCAC___ATGGACGGTTTCCAAAGGCATTTTGATTCCCAAGTAATTATTTATGGAAAACAAGTTATAATCAAT...GGAGAAGCCACTTGAGCAGACATTTGCAACAATGGTGTCTTCCTTGGGAAGTGGAATGATGAG___ATACATTGCCTTTGACTTCCATAAGGAATGTAAAAATATGAGATGGGATCGACTAAGTATTTTATTGGATCAGGTAGCAGAAATGCAAGATGAATTAAG|TTTTATGTGCTGAAAGAGTTGGCCAGATGACTAAGACATATAATGACATAGATGCTGTCACTCGGCTTCTTGAGGAG___AAAGAGCGGGATTTAGAATTGGCCGCTCGCATCGGCCAGTCGTTGTTGAAGAAGAACAAGACCCTAACCGAGAGGAACGAGCTGCTGGAGGAGCAGGTGGAACACATCAGGGAGGAG___GTGTCTCAGCTCCGGCATGAGCTGTCCATGAAGG EKPLEQTFATMVSSLGSGMMRYIAFDFHKECKNMRWDRLSILLDQVAEMQDELs|fmc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8722 SACM1L::TRAK1 ENSG00000211456.14::ENSG00000182606.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1530 TRUE 604 SACM1L ENSG00000211456.14 protein_coding + + chr3:45689056-45745412:+ chr3:45723543:+ chr3:45730548-45786904:+ chr3:45765035:+ TRAK1 ENSG00000182606.17 protein_coding + + chr3:42013802-42225890:+ chr3:42176814:+ chr3:42055294-42267382:+ chr3:42218306:+ chr3:45734782,chr3:45734778 chr3:42160442,chr3:42160437 NA NA chr3:45776274,chr3:45776270 chr3:42201934,chr3:42201929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SacI_homology_domain(86%)|HAP1_N-terminal_conserved_region(78%),Kinesin_associated_protein(100%) Syja_N(68%)|HAP1_N(26%),Milton(100%) 2 0 2 155 91 ENST00000455997.5 ENST00000673621.2 downstream upstream none CAAAGCTTCGTTTGTACAG___ACTCGAGGATCAATACCTGTTTTCTGGTCCCAAAGACCAAACCTCAAGTACAAACCACTGCCACAGATCAGCAAAGTAGCAAATCAC___ATGGACGGTTTCCAAAGGCATTTTGATTCCCAAGTAATTATTTATGGAAAACAAGTTATAATCAATCTG|TTTTATGTGCTGAAAGAGTTGGCCAGATGACTAAGACATATAATGACATAGATGCTG KASFVQTRGSIPVFWSQRPNLKYKPLPQISKVANHMDGFQRHFDSQVIIYGKQVIINL|fyvlkelar* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8724 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 892 TRUE 1531 TRUE 605 TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17622648:- chr3:17198654-18486309:- chr3:17664140:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15212104:+ chr3:15247659-15294423:+ chr3:15253611:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Calpain_family_cysteine_protease(100%),Calpain_large_subunit__domain_III(100%),MIT_(microtubule_interacting_and_transport)_domain(79%) CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)|Calpain_III(100%),MIT(38%),Peptidase_C2(100%) 7 4 7 41 117 ENST00000443499.6 ENST00000253693.7 upstream upstream duplicates(2) GAGCCCTTCTGCGCCACAG___TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT___GAGATGCTTGGAGTGTAAAGATCCCATGGTCACATAAATCCGGAAAGCACTGAATACTTTGTTTCCCATAAGAGAATCCCATTATATGTTGATGTATTAAAAGACCTGAGAACCTGGT|GAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTAGAAAATATTCAAGAAAAAATAACTGAGTATCTG...ACATCAGTTGGACTTAGAGCGTGCTCATTTCCTTGTTACACAAGCTTTTGATGAAGATGAAAAAGAGAATGTTGAAGATGCTATAGAATTGTACACAGAAGCTGTGGATCTCTGTCTGAAAACA___TCTTATGAAACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8725 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1531 TRUE 605 TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17622648:- chr3:17198654-18486309:- chr3:17664140:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15210802:+ chr3:15247659-15294423:+ chr3:15252309:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Calpain_family_cysteine_protease(100%),Calpain_large_subunit__domain_III(100%),MIT_(microtubule_interacting_and_transport)_domain(79%) CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)|Calpain_III(100%),MIT(52%),Peptidase_C2(100%) 0 1 7 41 6 ENST00000443499.6 ENST00000418994.1 upstream upstream none TGGGGAGCCCTTCTGCGCCACAG___TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT___GAGATGCTTGGAGTGTAAAGATCCCATGGTCACATAAATCCGGAAAGCACTGAATACTTTGTTTCCCATAAGAGAATCCCATTATATGTTGATGTATTAAAAGACCTGAGAACCTGGT|GTTCAGTGAAACAACTCCTGCTCAAACAACTGGATTCAA...TGACCCATGAAGTGTACACGCTTGGtTTACTGaAGAGAAG___GAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTAGAAAATATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8726 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1531 TRUE 605 TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623849:- chr3:17198654-18486309:- chr3:17665341:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15212104:+ chr3:15247659-15294423:+ chr3:15253611:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Calpain_family_cysteine_protease(100%),Calpain_large_subunit__domain_III(100%),MIT_(microtubule_interacting_and_transport)_domain(79%) CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)|Calpain_III(100%),MIT(38%),Peptidase_C2(100%) 1 1 3 98 117 ENST00000696125.1 ENST00000253693.7 upstream upstream mismatches(1) GAGGAGGGGAGGAGGAGGAGGATTCAGGGAATAGGAGCTGGGGAGCCCTTCTGCGCCACAG___TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT|GAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTAGAAAATATTCAAG...AAAATAACTGAGTATCTGGAAAGAGTTCAAGCTCTACATTCAGCAG___TTCAGTCAAAGAGTGCTGATCCTTTGAAGTCAAAACATCAGTTGGACTTAGAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8727 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1531 TRUE 605 TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17662990:- chr3:17198654-18486309:- chr3:17704482:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15212104:+ chr3:15247659-15294423:+ chr3:15253611:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Calpain_family_cysteine_protease(100%),Calpain_large_subunit__domain_III(100%),MIT_(microtubule_interacting_and_transport)_domain(79%) CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)|Calpain_III(100%),MIT(38%),Peptidase_C2(100%) 1 0 2 5 117 ENST00000446818.6 ENST00000253693.7 upstream upstream none GGGAGGAGGAGGAGGATTCAGGGAATAGGAGCTGGGGAGCCCTTCTGCGCCACAG___ACCTCATTGTACATACAAAATTACAATCATGAATGTAAAGGAAAGCACACTGGAACTGCTTGCAGCTGACTGCGACCTTGAGTCTCAGCTTCTGCATCTGTGAAATGAAGATACTGGTCTG|GAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTAGAAAATATTCAAGAAAAAATAACTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8728 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1531 TRUE 605 TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17742481:- chr3:17198654-18486309:- chr3:17783973:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15212104:+ chr3:15247659-15294423:+ chr3:15253611:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Calpain_family_cysteine_protease(100%),Calpain_large_subunit__domain_III(100%),MIT_(microtubule_interacting_and_transport)_domain(79%) CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)|Calpain_III(100%),MIT(38%),Peptidase_C2(100%) 2 0 1 97 117 ENST00000696125.1 ENST00000253693.7 upstream upstream none CCCTCCCGCCCTGTTCTCTTTCAGGTCGGGCCGGGCCCGGCCGCTTCCGCGAGCGCCCTGCAGACTGAGGGAGAGAGAGAGAAAGAGGAGGGGAGGAGGAGGAGGATTCAGGGAATAGGAGCTGGGGAGCCCTTCTGCGCCACAG|GAAGCTGCACAAGCCTTAATTTATGCTGAGATGGCAGGATCAAGCCTAGAAAATATTCAAGAAAAAATAACTGAGTATCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8732 TBC1D5::LINC01811 ENSG00000131374.15::ENSG00000226320.6 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623849:- chr3:17198654-18486309:- chr3:17665341:- LINC01811 ENSG00000226320.6 lncRNA + - chr3:33956972-34677247:+ chr3:34277216:- chr3:33998464-34718739:+ chr3:34318708:- chr3:17596474,chr3:17596484 chr3:34351471,chr3:34351478 NA NA chr3:17637966,chr3:17637976 chr3:34392963,chr3:34392970 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none CUT(100%),CUTL(100%),Homeodomain(100%),ULD(100%)| 2 7 8 98 25 ENST00000696125.1 unknown upstream downstream duplicates(2),mismappers(1),multimappers(1) CTGAGGGAGAGAGAGAGAAAGAGGAGGGGAGGAGGAGGAGGATTCAGGGAATAGGAGCTGGGGAGCCCTTCTGCGCCACAG___TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT|CCAGAGGATCCAGTGGAGATCTGAGGATAGAAGAATCCTGTGTTCCTGAATGACTGCATGGAGCAGTACGTTACCATCCTGGCACCTGCACCGGACTATGACATGAATGAGGATAAACCTATACTTTGTTAAGCCAGGGATATTTGAGAGTTGTATATTATAGCACCTAGCACACCCAAATGCAGACCTTCACTCTTTATAATTTCACCACTTAGACAGGGGTTTTGGCCTCTTTAGCCTTTCTTTTCACCCCTCTGATGAGCCCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8736 PHEX::FANCB ENSG00000102174.10::ENSG00000181544.16 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 894 TRUE 1533 TRUE 606 PHEX ENSG00000102174.10 protein_coding + + chrX:22032325-22494713:+ chrX:22114586:+ chrX:22050443-22512830:+ chrX:22132704:+ FANCB ENSG00000181544.16 protein_coding - - chrX:14690388-14873255:- chrX:14797298:- chrX:14708510-14891377:- chrX:14815420:- chrX:22127649,chrX:22127644 chrX:14814801,chrX:14814806 NA NA chrX:22145766,chrX:22145761 chrX:14832923,chrX:14832928 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Peptidase_family_M13(59%)| Peptidase_M13_N(55%)|Neur_chan_memb(100%) 4 3 8 20 14 ENST00000379374.5 ENST00000696351.1 downstream downstream duplicates(3) GAA___GACCATTGCCAACTATTTGGTGTGGAGAATGGTTTATTCCAGAATTCCAAACCTTAGCAGGCGCTTTCAGTATAGATGGCTGGAATTCTCAAGG___GTAATCCAGGGGACCACAACTTTGCTGCCTCAATGGGACAAATGTGTAAACTTTATTGAAAGTGCCCTCCCTTATGTTGTTGGAAAGATGTTTGTAGATGTGTACTTCCAGGAAGATAAGAAGGAAATG|ATCACATGTTTTGGGGAAAGCCAGCCAACCTGCCATGAGGACACTCAAGCAGCCCTAGGAAGAGTCCTACCTTGCAAAGATCTGAGGCCTCCTGCTAACAGCCAGCAAGGAATTGAGGTCTTTGTGATGGTTAATTTTATGTGTCAACTTGACTAGGCCAGATATTTGGTCATACATTATTCTCTGTGTGTATGT KTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVDVYFQEDKKEM|ITCFGESQPTCHEDTQAALGRVLPCKDLRPPANSQQGIEVFVMVNFMCQLD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8737 PHEX::FANCB ENSG00000102174.10::ENSG00000181544.16 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1533 TRUE 606 PHEX ENSG00000102174.10 protein_coding + + chrX:22032325-22494713:+ chrX:22099151:+ chrX:22050443-22512830:+ chrX:22117269:+ FANCB ENSG00000181544.16 protein_coding - - chrX:14690388-14873255:- chrX:14797298:- chrX:14708510-14891377:- chrX:14815420:- chrX:22127649,chrX:22127644 chrX:14814801,chrX:14814806 NA NA chrX:22145766,chrX:22145761 chrX:14832923,chrX:14832928 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Peptidase_family_M13(46%)| Peptidase_M13_N(42%)|Neur_chan_memb(100%) 0 1 3 11 14 ENST00000379374.5 ENST00000696351.1 downstream downstream none TCCACATGAAAACCGAACCAGCGAGGCCATGTACAACAAAATGAACATTTCTGAACTGAGTGCTATGATTCCCCAG___TTCGACTGGCTGGGCTACATCAAGA...TGACACCAGACTCTACCCCCATCTGAAAGACATCAGCCCCTCCGAGAATGTGGTGGTCCGCGTCCCGCAGTACTTTAAAGATTTGTTTAGGATATTAGGGTCTGAGAGAAAGAA|ATCACATGTTTTGGGGAAAGCCAGCCAACCTGCCATGAGGACACTCAAGCAGCCCTAGGAAGAGTCCTACCTTGCAAAGATCTGAGGCCTCCTGCTAACAGCCAGCAAGGAATTGAGGTCTTTGTGATGGTTAATTTTATGTGTCAACTTGACTAGGCCAGATATTTGGTCATACATTATTCTCTGTGTGTATG DTRLYPHLKDISPSENVVVRVPQYFKDLFRILGSERKk|shvlgkasqpamrtlkqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8747 TRANK1::ULK4 ENSG00000168016.15::ENSG00000168038.11 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 896 FALSE NA FALSE NA TRANK1 ENSG00000168016.15 protein_coding - - chr3:36826819-36945057:- chr3:36842622:- chr3:36868310-36986548:- chr3:36884113:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41398264:- chr3:41288090-42003622:- chr3:41439755:- chr3:36838672,chr3:36838681 chr3:41405308,chr3:41405314 NA NA chr3:36880163,chr3:36880172 chr3:41446799,chr3:41446805 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none TPR_8(100%)| 2 5 4 55 7 ENST00000429976.5 ENST00000301831.9 upstream downstream none CTGGATCTTTGATGAAAACCGAGAGAAACGGGCTCCCGCATTCAAATATTTCATTAGAAGAGATTTTGTCCAAGTTGTAAAGACAGATGAAAATAAAG___ACTTTGATGATAGCATGTTCGTTAAGACCTCAACTCCTGCGGAGTGGATTGCACAGGGAGATTACTACGCCAAGCACCAGTGCTGGAAG|CTTCCTAATGAAGATCCTGAGATTTTTGATGTTTCATCCAAGTGCCTGTCTATACTGGTTCAGCTGTATGGAGGGGAAAACCCGGACAGCCTCTCTCCTGAAAATGTGGAAATTTTTGCTCATTTACTGACATCCAAGGAGGACCCAAAGGAGCAGAAGC WIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWK|LPNEDPEIFDVSSKCLSILVQLYGGENPDSLSPENVEIFAHLLTSKEDPKEQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8748 TTLL7::ZC3H12A-DT ENSG00000137941.17::ENSG00000233621.3 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1536 TRUE 607 TTLL7 ENSG00000137941.17 protein_coding - - chr1:83865024-83999150:- chr1:83998931:- chr1:84330707-84464833:- chr1:84464614:- ZC3H12A-DT ENSG00000233621.3 lncRNA - - chr1:37350934-37474432:- chr1:37352557:- chr1:37816535-37940033:- chr1:37818158:- chr1:83983206,chr1:83983209 chr1:37437192,chr1:37437192 NA NA chr1:84448889,chr1:84448892 chr1:37902793,chr1:37902793 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 2 5 4 147 20 ENST00000474957.5 ENST00000668045.1 upstream downstream none GCTTGGGCAGCGACAGCTGTTCCAGGCACTCCGCGTCGAGCACCGGAGTCCCGAGCCGTGGCTGCCACGGGCGGTGGGCGGGCGGAGGAGAGCACCGGACCACCAGTGCAGGCTGCCGAGTCGGGGCGGCCGCCCcCGGGGgAGCTGC...GCGGGAGCACCTGGGGGACCGCTTGCAGCGGGGACGCGAGGACCCGGGCTGGGCTTTCCTCACCCGG|GTTAGAGCTGGGCAAAGAGGAAGCTGCTCAGGATTGGAAGGTGGGAGAGAAGCATCAGCCATCACTCTCTGAGGTCGCCACAGTCAGATGGAGTGACAGATGAAGAGATGCCTGGTGGGTCCCAGCTTGTCCTCGTTCTTCTCCCTTTGCCTCCAGCTCTTCTCCCTGGCTACCTACCCTGTTGGCCA...ATGT?GCTGCAGACACACGGAGG?GGGA?CCATGCAGAGGCACCGGCTC...___GGTCTACATCGGTTTCACCTCTGTCTCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8749 TTLL7::ZC3H12A-DT ENSG00000137941.17::ENSG00000233621.3 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1536 TRUE 607 TTLL7 ENSG00000137941.17 protein_coding - - chr1:83865024-83999150:- chr1:83998931:- chr1:84330707-84464833:- chr1:84464614:- ZC3H12A-DT ENSG00000233621.3 lncRNA - - chr1:37350934-37474432:- chr1:37373764:- chr1:37816535-37940033:- chr1:37839365:- chr1:83983206,chr1:83983209 chr1:37437192,chr1:37437192 NA NA chr1:84448889,chr1:84448892 chr1:37902793,chr1:37902793 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 0 3 6 147 8 ENST00000474957.5 ENST00000691215.1 upstream downstream none GCTTGGGCAGCGACAGCTGTTCCAGGCACTCCGCGTCGAGCACCGGAGTCCCGAGCCGTGGCTGCCACGGGCGGTGGGCGGGCGGAGGAGAGCACCGGACCACCAGTGCAGGCTGCCGAGTCGGGGCGGCCGCCCACGGGGAAGC...CCCGGGCTGGGCTTTCCTCACCCGG|CATCGTATTAACCAGAAGCTGCATTTACCTGGACCATACATCAGCCCGAGCCTGTCTCCAGTGAAGAGTTGgGTCGTGCTGGAGGGACCATTCATCACACCTGCCCAGCTTCTGGAGGCTCTCCTGGGCTTTGGTGTCTTAG___GTTAGAGCTGGGCAAAGAGGAAGCTGCTCAGGATTGGAAGGTGGGAGAGAAGCATCAGCCATCACTCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8751 ENSG00000236452::SETD5 ENSG00000236452.1::ENSG00000168137.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000236452 ENSG00000236452.1 lncRNA + - chr3:34203244-34268811:+ chr3:34255973:- chr3:34244736-34310303:+ chr3:34297465:- SETD5 ENSG00000168137.20 protein_coding + + chr3:9397615-9479240:+ chr3:9424467:+ chr3:9439299-9520924:+ chr3:9466151:+ chr3:34255115,chr3:34255117 chr3:9398721,chr3:9398719 NA NA chr3:34296607,chr3:34296609 chr3:9440405,chr3:9440403 NA NA antisense sense unknown intron 5'UTR/splice-site inversion/3'-3' high none |SET_domain(100%) |SET(100%) 1 4 5 6 142 unknown ENST00000663774.1 upstream upstream duplicates(2) GTATTGTTCTGCATGCCAGCAACTTGATGCTTTTTCAGTGTGGGAGGAGAGAAACTACAAATGCCACCCTCCATACTGGCGCAGGCTTCCTCCTGGCCAGCGTACTCAGCAAGGTAAGGGCAGCTTTGAACAGGAGACAGCAAAACAATAGGAAAACTAGGCTTGGAGCCTTCGACCCAGACACAGAGGCTAAAAATGACTTCTACCCACACAG|GTCTTCAGAACTACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAG___GATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGCTCACCCCCACTCTCAGAGTGGTCAGTCTCCA...AATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGA___AAAGGAAGTGGAAGCCCCCTACCTTTCAAGACGAAGTGGCACTACACCAGGATGTGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8752 LINC01811::SETD5 ENSG00000226320.6::ENSG00000168137.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01811 ENSG00000226320.6 lncRNA + - chr3:33956972-34677247:+ chr3:34255973:- chr3:33998464-34718739:+ chr3:34297465:- SETD5 ENSG00000168137.20 protein_coding + + chr3:9397615-9479240:+ chr3:9424467:+ chr3:9439299-9520924:+ chr3:9466151:+ chr3:34255115,chr3:34255117 chr3:9398721,chr3:9398719 NA NA chr3:34296607,chr3:34296609 chr3:9440405,chr3:9440403 NA NA antisense sense unknown intron 5'UTR/splice-site inversion/3'-3' high none |SET_domain(100%) |SET(100%) 1 4 5 6 142 unknown ENST00000663774.1 upstream upstream duplicates(2) GTATTGTTCTGCATGCCAGCAACTTGATGCTTTTTCAGTGTGGGAGGAGAGAAACTACAAATGCCACCCTCCATACTGGCGCAGGCTTCCTCCTGGCCAGCGTACTCAGCAAGGTAAGGGCAGCTTTGAACAGGAGACAGCAAAACAATAGGAAAACTAGGCTTGGAGCCTTCGACCCAGACACAGAGGCTAAAAATGACTTCTACCCACACAG|GTCTTCAGAACTACTAGCAGATAATTTGGGGGGACTTCATATTCAGAAGTCTATATAAAG___GATTCCTCATGTCCATAACATGTTGGATGAGGCTCTGCAGCTCACCCCCACTCTCAGAGTGGTCAGTCTCCA...AATTGGACCCCGTGATTTCCAATCTCTGCTGTGTTGGACGTCATGAGCATTGCAATCCCTCTGGGAGTCACCACATCAGATACATCCTACTCAGATATGGCTGCTGGATCAGA___AAAGGAAGTGGAAGCCCCCTACCTTTCAAGACGAAGTGGCACTACACCAGGATGTGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8762 CDKL5::ENSG00000289084 ENSG00000008086.13::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1539 TRUE 608 CDKL5 ENSG00000008086.13 protein_coding + + chrX:18425583-18653629:+ chrX:18510852:+ chrX:18443703-18671749:+ chrX:18528972:+ ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:22743345:- chrX:22277914-23311263:- chrX:22761462:- chrX:18533580,chrX:18533581 chrX:23007679,chrX:23007678 NA NA chrX:18551700,chrX:18551701 chrX:23025796,chrX:23025795 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(4%),Pkinase(4%)| 3 1 4 17 10 ENST00000379996.7 ENST00000687248.1 downstream downstream none CAAATATGTGAAAGTTCCCACCAACCAGTGAGAATTTCTTCCTTCAGACGGTTTTGGATCTTACTGCACAGCTTTCTGAGAAGTTCTTTTGGTGCCATGTTTTGTGGCTTGCATCAAAAGAGGAGTTTGTCTTCATGAAGATTCCTAACATTGGTAATGTGATGAATAAATTTGAGATCCTTGGGGTTGTAGGTGAAG___GAGCCTATGGAGTTGTACTTAAATGCAGACACA|AGTACAGAAGCTTCTATTCTGGAATAGAACAGCTAGCATACTACCAAGACTTTTCAAGGAGCAAGAATGGAGCTCCCTGGAGAACTGACTGAACATGGCTTCAGA MKIPNIGNVMNKFEILGVVGEGAYGVVLKCRH|kyrsfysgieqlayyqdfsrskngapwrtd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase-like 5 CMGC CDKL O76039 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8763 CDKL5::ENSG00000289084 ENSG00000008086.13::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1539 TRUE 608 CDKL5 ENSG00000008086.13 protein_coding + + chrX:18425583-18653629:+ chrX:18510854:+ chrX:18443703-18671749:+ chrX:18528974:+ ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:22743338:- chrX:22277914-23311263:- chrX:22761455:- chrX:18533580,chrX:18533581 chrX:23007679,chrX:23007678 NA NA chrX:18551700,chrX:18551701 chrX:23025796,chrX:23025795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein_kinase_domain(7%)| PK_Tyr_Ser-Thr(4%),Pkinase(4%)| 2 2 2 17 8 ENST00000379996.7 ENST00000687248.1 downstream downstream none GTGGCTTGCATCAAAAGAGGAGTTTGTCTTCATGAAGATTCCTAACATTGGTAATGTGATGAATAAATTTGAGATCCTTGGGGTTGTAGGTGAAG___GAGCCTATGGAGTTGTACTTAAATGCAGACACAAG|AAGCTTCTATTCTGGAATAGAACAGCTAGCATACTACCAAGACTTTTCAAGGAGCAAGAATGGAGCTCCCTGGAGAACTGACTGAACATGGCTT...CCCTCACTTTTACTGTgTTTTGACCTGGACCAGTCTACATTTATATGAATAGCTACAAAGCAGCTTTCAGCACAAGGCTGTAGGGTAGGTTCAGATTTGGC MKIPNIGNVMNKFEILGVVGEGAYGVVLKCRHK|kllfwnrtasilprlfkeqewsslen* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase-like 5 CMGC CDKL O76039 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8766 PLCL2::ENSG00000284672 ENSG00000154822.18::ENSG00000284672.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1541 TRUE 609 PLCL2 ENSG00000154822.18 protein_coding + + chr3:16802651-17090604:+ chr3:16885366:+ chr3:16844159-17132096:+ chr3:16926865:+ ENSG00000284672 ENSG00000284672.1 lncRNA - - chr3:46742092-46812558:- chr3:46756629:- chr3:46783582-46854048:- chr3:46798119:- chr3:16903391 chr3:46773953 NA NA chr3:16944883 chr3:46815443 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 5 1 38 23 ENST00000615277.5 ENST00000641183.1 downstream downstream duplicates(1),mismatches(7) GGGGGAGGTCGCCTCGGCCACGGGCGGGCGCGCTATGACAGCGGCGGGGgTTCCAACGGAGACTGCAGCCTCGGCG?GTCCGGGG?CGAAGCCCGGGCTAGCCCTACCAGGGGACCCCGCGGCGTTGCGCTCGCCCCGACCCCCAGCGCGGTCGTCTGTACCCTCCCCCGGGAGAGCAAGCCGGGCGGCCTGCCCCGCCGGAGCAGCATCATCAAG|GTGAGCCATACCGACCCGAGGAGGATTCCAGAATGACCCCGGCAAGCCCAGAAGCCCGGACGTCTCCTGTGCACCCGAAATTCCCCAAAATTCCAGAAACTTCTGTAGCTCCAGGGTCTCCAGCGACCGCAGGGCCTCCAGGATCCTGGGTTACTTCAGCATCTACAGTGGGAGAAGCCTTGGAATCCGACGGAATCTCTGACCTTGGA GGGRLGHGRARYDSGGgSNGDCSLG?SG?EARASPTRGPRGVALAPTPSAVVCTLPRESKPGGLPRRSSIIK|vshtdprripe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8767 PLCL2::ENSG00000284672 ENSG00000154822.18::ENSG00000284672.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1541 TRUE 609 PLCL2 ENSG00000154822.18 protein_coding + + chr3:16802651-17090604:+ chr3:16885366:+ chr3:16844159-17132096:+ chr3:16926865:+ ENSG00000284672 ENSG00000284672.1 lncRNA - - chr3:46742092-46812558:- chr3:46754648:- chr3:46783582-46854048:- chr3:46796138:- chr3:16903391 chr3:46773953 NA NA chr3:16944883 chr3:46815443 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 2 0 38 56 ENST00000615277.5 ENST00000641183.1 downstream downstream none AAGCCGGGCGGCCTGCCCCGCCGGAGCAGCATCATCAAG|TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG___TGACTGTCTTTCTTTTTC KPGGLPRRSSIIK|fqdqchlffrrls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8770 PLCL2::ENSG00000206549 ENSG00000154822.18::ENSG00000206549.13 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1542 TRUE 610 PLCL2 ENSG00000154822.18 protein_coding + + chr3:16802651-17090604:+ chr3:16885366:+ chr3:16844159-17132096:+ chr3:16926865:+ ENSG00000206549 ENSG00000206549.13 protein_coding - - chr3:46712115-46812574:- chr3:46756629:- chr3:46753605-46854064:- chr3:46798119:- chr3:16903391 chr3:46773953 NA NA chr3:16944883 chr3:46815443 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Trypsin(100%) |DUF1986(100%),Trypsin(100%) 1 5 1 38 23 ENST00000615277.5 ENST00000460241.2 downstream downstream duplicates(1),mismatches(7) GGGGGAGGTCGCCTCGGCCACGGGCGGGCGCGCTATGACAGCGGCGGGGgTTCCAACGGAGACTGCAGCCTCGGCG?GTCCGGGG?CGAAGCCCGGGCTAGCCCTACCAGGGGACCCCGCGGCGTTGCGCTCGCCCCGACCCCCAGCGCGGTCGTCTGTACCCTCCCCCGGGAGAGCAAGCCGGGCGGCCTGCCCCGCCGGAGCAGCATCATCAAG|GTGAGCCATACCGACCCGAGGAGGATTCCAGAATGACCCCGGCAAGCCCAGAAGCCCGGACGTCTCCTGTGCACCCGAAATTCCCCAAAATTCCAGAAACTTCTGTAGCTCCAGGGTCTCCAGCGACCGCAGGGCCTCCAGGATCCTGGGTTACTTCAGCATCTACAGTGGGAGAAGCCTTGGAATCCGACGGAATCTCTGACCTTGGA GGGRLGHGRARYDSGGgSNGDCSLG?SG?EARASPTRGPRGVALAPTPSAVVCTLPRESKPGGLPRRSSIIK|vshtdprripe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8771 PLCL2::ENSG00000206549 ENSG00000154822.18::ENSG00000206549.13 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1542 TRUE 610 PLCL2 ENSG00000154822.18 protein_coding + + chr3:16802651-17090604:+ chr3:16885366:+ chr3:16844159-17132096:+ chr3:16926865:+ ENSG00000206549 ENSG00000206549.13 protein_coding - - chr3:46712115-46812574:- chr3:46754648:- chr3:46753605-46854064:- chr3:46796138:- chr3:16903391 chr3:46773953 NA NA chr3:16944883 chr3:46815443 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none |Trypsin(100%) |DUF1986(100%),Trypsin(100%) 0 2 0 38 56 ENST00000615277.5 ENST00000460241.2 downstream downstream none AAGCCGGGCGGCCTGCCCCGCCGGAGCAGCATCATCAAG|TTTCAGGACCAATGCCACTTGTTCTTCAGGAGACTGAGCTAAACATTATGCGTCATGAGAAATGTTGTGAGATGCTCAAGAACAAGAATATATCCAAGAGTAAAATGGTCACGAGGGGGACCGTCTGTGGCTATAATGACCAAGGGAAGGATGCCTGTCAG___TGACTGTCTTTCTTTTTC KPGGLPRRSSIIK|fqdqchlffrrls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8775 CNTN4::ENSG00000283563 ENSG00000144619.15::ENSG00000283563.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2098978:+ chr3:2140497-3099643:+ chr3:2140662:+ ENSG00000283563 ENSG00000283563.1 protein_coding + - chr3:28349178-29767537:+ chr3:28557738:- chr3:28390669-29809028:+ chr3:28599229:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 1 4 1 39 17 ENST00000422330.5 unknown downstream downstream duplicates(3),mismatches(2) GCCGCGCCAGACGGAGCCCGGGGTTCGACGCCAGGATTGGCTGCAAGTAGGGAGCTTTCGCCGCCGCCCCGGGCCCCTCGGACTGTGCCGGCGCCGCACCCGAGGCTCTCGCCAGCCCGGCGCCCCGGTGCTGAG|GGAAGGAAATAATTGGAGGAGTAGTCCCAGCAGTAAGAGAGAAGAAAGAAAGACATGGGCCTTGGAAGATAGATAGGATATGAGTAAAATGAAGCAAAGAGCATTGCGATTAGAGCAAGGTGTTGGAAATGTATGCTGCAGAAATACTGCCTAAAACCTGGAAGTCTCATAGCTGAAAGCACCAAACTTTGGTCCCCCTCTCGCCACCAAAATGAAGAGAGAATGCAGCTGGAGATGATGAATTTCAGTGTGGATGTAGATGCAGACATAACAGCCATTTCAGAAGAGCATGTTTCACCTATAATATCTGCTATAACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8780 IGSF21::LRP8 ENSG00000117154.12::ENSG00000157193.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGSF21 ENSG00000117154.12 protein_coding + + chr1:18107798-18378483:+ chr1:18365697:+ chr1:18434292-18704977:+ chr1:18692191:+ LRP8 ENSG00000157193.18 protein_coding - - chr1:53242364-53328469:- chr1:53247056:- chr1:53708036-53794141:- chr1:53712728:- chr1:18368818,chr1:18368819 chr1:53248563,chr1:53248562 NA NA chr1:18695312,chr1:18695313 chr1:53714235,chr1:53714234 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Immunoglobulin_V-set_domain(100%)| V-set(100%)| 0 3 2 6 159 ENST00000251296.4 ENST00000306052.12 downstream downstream none CCTCCTCCAGCCAACCACAGAGAACATACCAGAGACGGTCGTGAGCCGTGAGTTTCCCCGCTGGGTCCACAGCGCCGAGCCCACCTACTTCCTGCGCCACA...CTCACCTGGACCCTCAACCCACAGATCGACAACGAGGCCCTCTTCAGCTGCGAGGTCAAGCACCCAGCTCTGTCGATGCCCATGCAGGCAGAGGTCACGCTGG|CGAGTGGCATTAAGCCTTGAAGATGATGGACTACCCTGAGGATGGGATCACCCCCTTCGTGCCTCATGGAATTCAGTCCCATGCACTACACTCTGGATGGTGTATGACTGGATGAATGGGTTTCTATATATGGGTCTGTGTGAGTGTATGTGTGTGTGTGATTTTTTTTTTAAATTTATGTTGCGGAAAGGTAAC...AGTTTTTCTATGTATAATGTTTTATACACTTTTTAACTGGTTGCACTACCCATGAGGAATTCGTGGAATGGCTACTGCTGACTAACATGATGCACATAACC LTWTLNPQIDNEALFSCEVKHPALSMPMQAEVTL|asgikp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8782 FRMPD4::PCYT1B ENSG00000169933.17::ENSG00000102230.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1544 TRUE 611 FRMPD4 ENSG00000169933.17 protein_coding + + chrX:11822423-12724523:+ chrX:12065575:+ chrX:11840542-12742642:+ chrX:12083694:+ PCYT1B ENSG00000102230.14 protein_coding - - chrX:24558087-24672677:- chrX:24619084:- chrX:24576204-24690794:- chrX:24637201:- NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site inversion high none |Cytidylyltransferase-like(100%) |CTP_transf_like(100%) 2 0 3 9 181 unknown ENST00000379145.5 downstream downstream none GTTCCATTGAAAAGGCGCAGGCGTTCGGGCTGGCTGACTAGATGGATCAGGCCTGGCTGCCTGATGGCTATATTCCTCCTTCCTCCCTCTCCACTTCCATCTCAACCCTTGAGGCTGCATATTGAAT|ACCCTGACTGCACCTGCCCCATTTGCTGATGAAACCAACTGCCAGTGTCAAGCACCCCATGAAAAACTGACCATTGCTCAGGCCCGCTTAGGAACACCAG___CTGACAGGCCTGTCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8783 FRMPD4::PCYT1B ENSG00000169933.17::ENSG00000102230.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1544 TRUE 611 FRMPD4 ENSG00000169933.17 protein_coding + + chrX:11822423-12724523:+ chrX:12139012:+ chrX:11840542-12742642:+ chrX:12157131:+ PCYT1B ENSG00000102230.14 protein_coding - - chrX:24558087-24672677:- chrX:24619084:- chrX:24576204-24690794:- chrX:24637201:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Cytidylyltransferase-like(100%) |CTP_transf_like(100%) 0 1 3 0 181 ENST00000380682.5 ENST00000379145.5 downstream downstream none GCTTTGTGAAGATTGCAAAGCTTTCGAG|ACCCTGACTGCACCTGCCCCATTTGCTGATGAAACCAACTGCCAGTGTCAAGCACCCCATGAAAAACTGACCATTGCTCAGGCCCGCTTAGGAACACCAG___CTGACAGGCCTGTCAGAG...GAATGAAGCCGAGAGATACGAAGCTCTCAGACACTGTCtCTACGTAGACGAAGTTATCAGAGATGCTCCCTGGACACTCACGCCAGAGTTTCTGGAAAAAC FVKIAKLSr|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8787 LRRC49::THSD4 ENSG00000137821.12::ENSG00000187720.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:70919193:+ chr15:71145578-71345997:+ chr15:71211532:+ THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71411687:+ chr15:71389291-72075722:+ chr15:71704026:+ chr15:70924953,chr15:70924951 chr15:71338844,chr15:71338839 NA NA chr15:71217292,chr15:71217290 chr15:71631183,chr15:71631178 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none Leucine-rich_repeat(39%)|ADAM-TS_Spacer_1(100%),PLAC_(protease_and_lacunin)_domain(100%),Thrombospondin_type_1_domain(93%) LRR_4(28%),LRR_8(30%),LRR_9(11%),THAP(100%)|ADAM_CR_3(61%),ADAM_spacer1(100%),PLAC(100%),TSP1_ADAMTS(100%),TSP_1(99%) 1 1 2 75 8 ENST00000559469.5 ENST00000355327.7 downstream upstream none AAAATAGATTTTTAAATGTCTACATATAAACTTGCCACTAAATCTAGTGACTTCGAATATTTTATTTTTAGGGTTTTTAGAACATGTATATTTCAGGTTTT...GTGAGTTGAGAGTTTTAAATCTTGCCAGGAACTTTTTAAGTCATGTTGATAATCTTAATGGGCTGGATTCACTAACTGAACTTAACTTGCGACACAATCAAATCACTTTCGTG|TAAAAGGCAATCGCAAATGTGAGTTGAACTGCCAGGCAATGGGCTACCGCTTCTATGTACGGCAAGCTGAGAAAGTCATCGATGGCACCCCCTGTGACCAGAACGGCACGGCCATCTGTGTGTCTGGGCAGTGCAAG___AGCATTGGCTGTGATGACTACTTAGGCTCCGACAAAGTCGTGGACAAATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8789 TUBA8::ENSG00000254394 ENSG00000183785.16::ENSG00000254394.2 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUBA8 ENSG00000183785.16 protein_coding + + chr22:18110100-18146683:+ chr22:18127034:+ chr22:18592866-18629450:+ chr22:18609801:+ ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82381521:+ chr8:82945768-83874161:+ chr8:83293756:+ chr22:18140703,chr22:18140703 chr8:82213374,chr8:82213371 NA NA chr22:18623470,chr22:18623470 chr8:83125609,chr8:83125606 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(69%)| Pex26(100%),Tubulin(100%),Tubulin_C(6%)| 1 3 0 257 5 ENST00000679963.1 ENST00000663058.1 downstream upstream none CGACCCGAGACATGGCAAGTACATGGCCTGCTGCATGCTCTACCGGGGCGACGTGGTGCCCAAGGATGTGAATGTCGCTATTGCTGCCATCAAGACCAAGAGGACCATCCAGTTTGTAGACTGGTGTCCCACAGGCTTCAAG|CATCTGGAAACATAAGGAGCTTATGAAGTCCTTGCAGCAGAGTTGAAGGAGCCTCAGATGTGATTGGAGGTCATTGGGAAACACTGTGGGTCTTCTCTGTCTGGCCTTGAAG___GCTGGAGTGCAATGGCATGATTTCGG...AATGTCATATTGAAATGTGACCTCCAATTTTGGAGGTGGACCTAGTGGGAGGCGTTTGGGTCATGCGTTGGATCCTTCATGAATGGCTTGGTGTCCTCCC DPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFK|hlet* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8793 ZKSCAN7-AS1::ENSG00000287069 ENSG00000236869.3::ENSG00000287069.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1545 TRUE 612 ZKSCAN7-AS1 ENSG00000236869.3 lncRNA - - chr3:44556985-44685665:- chr3:44661262:- chr3:44598477-44727157:- chr3:44702754:- ENSG00000287069 ENSG00000287069.1 lncRNA - - chr3:19389185-19702795:- chr3:19400647:- chr3:19430677-19744287:- chr3:19442139:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 0 3 1 65 6 ENST00000457331.2 ENST00000670571.1 upstream downstream none CTGGGGGCAGGCGCGTCGCGGTGGCAGTGTTTCTTGGGTGTGCGGGGCCGGGCGCCCCGTAGCCTCTG___GTCTGCATGGGGATTACAGGTGTTTGGCAAGTG...CTAGATTCAGGACCTGGACTTGGATATAAGCTGTCACTTGTTACTTGGCCTTGCACTAAATGACCATTCTCAG|ATTCTTGGCCTTCCCACCCTACCCCGCATGATACAGATACACTTTTAGGCATCTGCAATGGATACGCTTGCTCCAGCCAAAGG___GTATTGAAAAAAGCATGAACAGCTAATATGAATGTCAAAAGGAAGTAACTTCATCAACTGAAGAATCTGGCCTGCATATCACTG...CAGGGCATCTTTATTGAAGAAGGCACAAAACCCTGGAAGCATAAATCGCCACAAGCATTTAAAACCTGAACATGCGATAAATAAATCAACCTTAAAGaCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8794 ZKSCAN7-AS1::ENSG00000287069 ENSG00000236869.3::ENSG00000287069.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1545 TRUE 612 ZKSCAN7-AS1 ENSG00000236869.3 lncRNA - - chr3:44556985-44685665:- chr3:44685559:- chr3:44598477-44727157:- chr3:44727051:- ENSG00000287069 ENSG00000287069.1 lncRNA - - chr3:19389185-19702795:- chr3:19400647:- chr3:19430677-19744287:- chr3:19442139:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion low none none none 0 1 0 36 6 ENST00000457331.2 ENST00000670571.1 upstream downstream duplicates(1) CGGTGGCAGTGTTTCTTGGGTGTGCGGGGCCGGGCGCCCCGTAGCCTCTG|ATTCTTGGCCTTCCCACCCTACCCCGCATGATACAGATACACTTTTAGGCATCTGCAATGGATACGCTTGCTCCAGCCAAAGG___GTATTGAAAAAAGCATGAACAGCTAATATGAATGTCAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8795 ENSG00000236452::LHFPL4 ENSG00000236452.1::ENSG00000156959.9 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1546 TRUE 613 ENSG00000236452 ENSG00000236452.1 lncRNA + + chr3:34203244-34268811:+ chr3:34258180:+ chr3:34244736-34310303:+ chr3:34299672:+ LHFPL4 ENSG00000156959.9 protein_coding - - chr3:9498361-9553822:- chr3:9506203:- chr3:9540045-9595506:- chr3:9547887:- chr3:34260342,chr3:34260341 chr3:9547026,chr3:9547027 NA NA chr3:34301834,chr3:34301833 chr3:9588710,chr3:9588711 NA NA sense sense unknown intron CDS/splice-site inversion high none |Lipoma_HMGIC_fusion_partner-like_protein(36%) |L_HMGIC_fpl(0%) 1 1 2 10 371 unknown ENST00000287585.8 downstream downstream duplicates(1) CAGGAATGGACTGCTCCATTTTCAGTGCAGATACAGGGAGGCTCAGAGAAGTGAAGGCCCTTGCTCATAAATGGTGGAACCCGAACGGGGAAGATAGAAGTCCTCCAGAGTCACAGACCCAGAGCTCCCAGGCAGAGTCCTGTGGAATTCTGGGTGTTGGACACTTTCAG|CTCTGTGCCTCGTCCTGGGCTGCATGATCTTTCCTGATGGCTGGGATGCCGAGACCATCCGGGACATGTGTGGGGCCAAGACGGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCATACATCCTGGCCATCATCGGCATCCTCAACGCCCTCATCCTCTCCTTCCTCGCCTTCGTGCTGGGCAACCGGCAAACAGACCTGCTGCAGGAGGAGCTCAAGCCGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8796 ENSG00000236452::LHFPL4 ENSG00000236452.1::ENSG00000156959.9 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1546 TRUE 613 ENSG00000236452 ENSG00000236452.1 lncRNA + + chr3:34203244-34268811:+ chr3:34203308:+ chr3:34244736-34310303:+ chr3:34244800:+ LHFPL4 ENSG00000156959.9 protein_coding - - chr3:9498361-9553822:- chr3:9506203:- chr3:9540045-9595506:- chr3:9547887:- chr3:34260342,chr3:34260341 chr3:9547026,chr3:9547027 NA NA chr3:34301834,chr3:34301833 chr3:9588710,chr3:9588711 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Lipoma_HMGIC_fusion_partner-like_protein(36%) |L_HMGIC_fpl(0%) 0 3 0 8 371 ENST00000455974.1 ENST00000287585.8 downstream downstream duplicates(1) CGTACGTGTATGGTCAATTTCCAAGTGGCCTGACTCTGGATGACTCAAGAGGGCTTTTCCTTCTCTCAGGAGCTACAATAGTCACAG|CTCTGTGCCTCGTCCTGGGCTGCATGATCTTTCCTGATGGCTGGGATGCCGAGACCATCCGGGACATGTGTGGGGCCAAGACGGGGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCATACATCCTGGCCATCATCGGCATCCTCAACGCCCTCATCCTCTCCTTCCTCGCCTTCGTGCTGGGCAACCGGCAAACAGACCTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8797 CMTM6::CHL1-AS2 ENSG00000091317.8::ENSG00000224318.6 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CMTM6 ENSG00000091317.8 protein_coding - - chr3:32481312-32502852:- chr3:32491710:- chr3:32522804-32544344:- chr3:32533202:- CHL1-AS2 ENSG00000224318.6 lncRNA - + chr3:109707-197341:- chr3:184932:+ chr3:151390-239024:- chr3:226615:+ chr3:32489208 chr3:153168 NA NA chr3:32530700 chr3:194851 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Membrane-associating_domain(58%)| MARVEL(58%)| 2 1 0 162 3 ENST00000205636.4 unknown upstream upstream duplicates(1) CGGTGTACAGCCCCACTACGGAGGAGGACCCGGGCCCCGCCAGAGGCCCCCGGAGCGGCCTCGCTGCCTACTTTTTCATGGGCCGGCTCCCATTGCTCCGGCGCGTTCTCAAGGGCTTGCAGCTG___TTGCTGTCTCTGCTGGCCTTCATCTGTGAAGAAGTTGTATCACAATGTACTTTATGTGGAGGACTTTATTTTTT...ATtCTGATTGTGTATTGCACTCCATTTTATGAGAGAGTTGATACCACAAAAGTAAAATCATCG|ATAATTCTAACGAGGGGCTGTTCCACCTCACATCTTCGATCACATGGTGGTGAGAAAACCCTATAACTTAAAGG...CAGCACTTTATGGGAAACGTCTTCTGACCCTTCTATAAACAATTCCTTTGGTAAAGTCCCCATTTTATGTTGGTTTGCTCTGTCATTGGCGTAGAGTTATG ILIVYCTPFYERVDTTKVKSS|iiltrgcstshlrshggektl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8798 TOPAZ1::STAC ENSG00000173769.4::ENSG00000144681.11 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOPAZ1 ENSG00000173769.4 protein_coding + + chr3:44241886-44332098:+ chr3:44323295:+ chr3:44283378-44373590:+ chr3:44364787:+ STAC ENSG00000144681.11 protein_coding + + chr3:36380503-36548007:+ chr3:36493151:+ chr3:36421995-36589499:+ chr3:36534643:+ chr3:44324013,chr3:44324011 chr3:36491512,chr3:36491507 NA NA chr3:44365505,chr3:44365503 chr3:36533004,chr3:36532999 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Putative_aspartate_racemase(100%)|Unstructured_on_SH3_and_cysteine-rich_domain-containing_protein_2(5%),Variant_SH3_domain(100%) Asp_Glu_race_2(100%)|SH3_1(100%),SH3_2(100%),SH3_9(100%),STAC2_u1(0%) 0 2 1 1 62 ENST00000309765.4 ENST00000273183.8 downstream upstream none CTTTAGGAAGGAGTCGTTTATGGCTCAAAGCCAGAGCCCACTACAAAA|ACTTCAGATCTTGTGGAGGTTCCTGAGGAAGCCAATGGGCCAGGAGGCGGGTATGACCTAAGGAAACGCAGCAACAGCG___TGTTTACATATCCAGAAAATGGCACTGATGATTTCAGAGATCCAGCGAAGAACATAAACCACCAG___GGATCTCTTTCCAAAGACCC LGRSRLWLKARAHYK|nfrscggs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8837 CAND2::EEF1A1P24 ENSG00000144712.13::ENSG00000223668.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAND2 ENSG00000144712.13 protein_coding + + chr3:12796472-12834804:+ chr3:12803444:+ chr3:12837971-12876303:+ chr3:12844943:+ EEF1A1P24 ENSG00000223668.1 processed_pseudogene + + chr3:39358545-39359922:+ chr3:39359831:+ chr3:39400036-39401413:+ chr3:39401322:+ chr3:12803526,chr3:12803549 chr3:39359615,chr3:39359615 NA NA chr3:12845025,chr3:12845048 chr3:39401106,chr3:39401106 NA NA sense sense unknown intron exon deletion low none none none 0 0 3 10 22 ENST00000295989.9 ENST00000451469.1 downstream upstream none CCGCCTTCCACATCTCCAGCCTCCTGGAGAAGATGACGTCCAGCGACAAGGACTTCAG___GTCTACTTCTAGGGGAACCCTGAGGTACTGCCCAAATCCtCCAGG...|...GTTGCCGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGTTGCCCAGAAAGGTCAGAAGGCTAAATGAATATTATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8857 ENSG00000280571::BTD ENSG00000280571.2::ENSG00000169814.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1554 TRUE 614 ENSG00000280571 ENSG00000280571.2 protein_coding - - chr3:42705756-42804518:- chr3:42786028:- chr3:42747248-42846010:- chr3:42827520:- BTD ENSG00000169814.17 protein_coding + + chr3:15601341-15722311:+ chr3:15635424:+ chr3:15642848-15763818:+ chr3:15676931:+ chr3:42763934,chr3:42763944 chr3:15612461,chr3:15612451 NA NA chr3:42805426,chr3:42805436 chr3:15653968,chr3:15653958 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none |Carbon-nitrogen_hydrolase(100%),Vanin_C-terminal_domain(100%) HIG_1_N(22%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),CN_hydrolase(100%),Vanin_C(100%) 1 1 2 2410 54 ENST00000431549.4 ENST00000672427.1 upstream upstream none GAGAGGTTTTCTCGCTCTAG___GGAGATTCTTCAAGCAATCACTATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGAGGAAGATCAGGGATCAAAACT...GTTTTGCAGCAATTGTTGCATATGGATTATATAAACTGAAGAGCAGGGGAAATACTAAAATGTCCATTCATCTGATCCACATGCGTGTGGCAGCCCAAGGCTTTGTTGTAGGAGCAATGACTGTTG|ATTTGTGGTCTGCATTATGTCTGGAGCCAGAAGTAAGCTTGCTCTTTTCCTCTGCGGCTGTTACGTGGTTGCCCTGGGAGCCCACACCGGGGAGGAGAGCGTGGCTGACCATCACGAGGCTGAATATTATGTGGCTGCCGTGTATGAGCATCCATCCATCCTGAGTCTGAACCCTCTGGCTCTCATCAGCCGCCAAGAGGCCTTGGAGCTCATGAACCAGAACCTTGACATCTATGAACAGCAAGTGATGACTGCAGCCCAA FAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTV|dlwsalclepevsllfssaavtwlpweptpgrrawltitrlnimwlpcmsihps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8858 ENSG00000280571::BTD ENSG00000280571.2::ENSG00000169814.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1554 TRUE 614 ENSG00000280571 ENSG00000280571.2 protein_coding - - chr3:42705756-42804518:- chr3:42794157:- chr3:42747248-42846010:- chr3:42835649:- BTD ENSG00000169814.17 protein_coding + + chr3:15601341-15722311:+ chr3:15635424:+ chr3:15642848-15763818:+ chr3:15676931:+ chr3:42763934,chr3:42763944 chr3:15612461,chr3:15612451 NA NA chr3:42805426,chr3:42805436 chr3:15653968,chr3:15653958 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none |Carbon-nitrogen_hydrolase(100%),Vanin_C-terminal_domain(100%) HIG_1_N(0%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),CN_hydrolase(100%),Vanin_C(100%) 1 0 0 2399 54 ENST00000648550.1 ENST00000672427.1 upstream upstream none CAAGCAATCACTATGTCAACAGACACAGGTGTTTCCCTTCCTTCATATGAGGAAGATCAGGGATCAAAACTCATTCGAAAAGCTAAAGAGGCACCATTCGTACCCGTTG|ATTTGTGGTCTGCATTATGTCTGGAGCCAGAAGTAAGCTTGCTCTTTTCCTCTGCGGCTGTTACGTGGTTGCCC MRKIRDQNSFEKLKRHHSYPL|icglhyvwsqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8859 CNTN4::SUMF1 ENSG00000144619.15::ENSG00000144455.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2098978:+ chr3:2140497-3099643:+ chr3:2140662:+ SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4068745:- chr3:3742498-4508957:- chr3:4110429:- chr3:2224274 chr3:4168418 NA NA chr3:2265958 chr3:4210102 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none |FGE-sulfatase(0%),I-set(100%),Ig_2(100%),Ig_3(100%),LRRCT(100%),LRR_5(100%),LRR_8(100%),ig(100%) 0 4 0 39 5 ENST00000418658.6 ENST00000448413.5 downstream downstream duplicates(1) CGCCGCCGCCCCGGGCCCCTCGGACTGTGCCGGCGCCGCACCCGAGGCTCTCGCCAGCCCGGCGCCCCGGTGCTGAG|TCCCAAGAGTACTATGATCCCTATTTTCAAGATGTGGCATCTGAGATGTTGAGAAGACACACAGCCAGCAGGTGGAAGGCCTTCTCATCTCTAGAACCATGCTGCTCAATACGTAGGCATCAGCAATATGCAGCTATTGAACGTTTGACATGTGGCAAGTTTGAATTGAGATGTGCT___AGTTTAAGAAAAATAGATTGCCTCAACACCAACATTGCCTGTAGCTACTCCATGAGGCAAGATGGACCCAGACTCCACTGTGTGGACTGACCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8860 IQSEC1::SUMF1 ENSG00000144711.17::ENSG00000144455.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IQSEC1 ENSG00000144711.17 protein_coding - - chr3:12897043-13283281:- chr3:13282711:- chr3:12938542-13324781:- chr3:13324211:- SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:3827509:- chr3:3742498-4508957:- chr3:3869193:- chr3:13279753,chr3:13279759 chr3:3912850,chr3:3912851 NA NA chr3:13321253,chr3:13321259 chr3:3954534,chr3:3954535 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none none none 0 4 0 7 22 ENST00000648114.1 ENST00000448413.5 upstream downstream none CGGGCCCCGGCCCCGGCCCGCAGCCGCTCGGCGCCATCCCGGAGCTCGGCGGCCGCCGCGACAA|AGTTTAAGAAAAATAGATTGCCTCAACACCAACATTGCCTGTAGCTACTCCATGAGGCAAGATGGACCCAGACTCCACTGTGTGGACTGACCTCCCAGAAGGATCCTCCTGTCCCTGAAGGCCACTCTGCCTTCAGCTACAGGCCCCAGTGCTGATTGTGATACTTAACAAGGGCTTTCAGATGTCTGAAACAAGAGTATAG...TTCCCAGCTCATTTCCAGTATGTATTTTCAAAGGCCATGTCATTTTTGAAG___ATGAACAAACTGAAGTCTCAAGAAGGCCAACACTTCCATGTACTTCAGAG GPGPGPQPLGAIPELGGRRDk|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8861 ENSG00000289084::PHEX ENSG00000289084.1::ENSG00000102174.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1555 TRUE 615 ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23064038:- chrX:22277914-23311263:- chrX:23082155:- PHEX ENSG00000102174.10 protein_coding + + chrX:22032325-22494713:+ chrX:22038469:+ chrX:22050443-22512830:+ chrX:22056587:+ chrX:23010388 chrX:22034111 NA NA chrX:23028505 chrX:22052229 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Peptidase_family_M13(100%) |Peptidase_M13(100%),Peptidase_M13_N(100%),zf_Hakai(100%) 0 4 0 4 8 ENST00000687248.1 ENST00000379374.5 upstream upstream none CTCGAGTATTGAAGCCTGGCTACTGTGACTGTGGGGAAGGGATTAATGGTCTCAGCATTCA|TGAGTCAAGGTCTCTTAAGTCTCCAAGCTAAACAGGAGTACTGCCTGAAGCCAGAATGCATCGAAGCGG___CTGCTGC...GATCCTTGTGATAATTTCTTCCGGTTCGCTTGTGATGGCTGGATAAGCAATAATCCAATTCCCGAAGATATGCCAAGCTATGGGGTTTATCCTTG?CTGAG...___AACTTTTGGAGAAATCAATCAGTAGAAGGCGGGACACCGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8862 ENSG00000289084::PHEX ENSG00000289084.1::ENSG00000102174.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1555 TRUE 615 ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23064038:- chrX:22277914-23311263:- chrX:23082155:- PHEX ENSG00000102174.10 protein_coding + + chrX:22032325-22494713:+ chrX:22047050:+ chrX:22050443-22512830:+ chrX:22065168:+ chrX:23010388 chrX:22034111 NA NA chrX:23028505 chrX:22052229 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Peptidase_family_M13(100%) |Peptidase_M13(100%),Peptidase_M13_N(100%),zf_Hakai(100%) 0 2 0 4 9 ENST00000687248.1 ENST00000379374.5 upstream upstream none GGAAGGGATTAATGGTCTCAGCATTCA|CTGCTGCCATCTTAAGTAAAGTAAATCTGTCTGTGGATCCTTGTGATAATTTCTTCCGGTTCGCTTGTGATGGCTGGATAAGCAATAATCCAATTCCCGAAGATATGCCAAG...TTTATCCTTGGCTGAGACATAATGTTGACCTCAAGTTGAAGG___AACTTTTGGAGAAATCAATCAGTAGAAGGCGGGACACCGAAGCCATACAGAAAGCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8871 SCML2::ENSG00000289084 ENSG00000102098.19::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1559 TRUE 616 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18320332:- chrX:18257433-18372808:- chrX:18338452:- ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23064121:- chrX:22277914-23311263:- chrX:23082238:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none mbt_repeat(51%)| MBT(94%)| 3 0 0 59 2 ENST00000251900.9 ENST00000687248.1 upstream downstream duplicates(1) GAGTGCTTCCGTCAG___TCTCAGATTCCACCTGTGAATGATTTCAAAGTTGGTATGAAATTGGAAGCCCGTGACCCTCGCAATGCCACTTCAGTATGTATTGCTACGGTTATTGGAATTACTGGGGCCAGGTTACGGTTACGACTGGATGGTAGTGACAACAGAAATGATTTTTGGAGGCTTGTCGATTCCCCAGACATACAACCTGTTGGGACATGTGAAAAGG...TGTTCCTCTTAAAGACACTAAATGGGTCTGAAATGGCATCTGCCACATTATTTAAGAAG|AGATGAACCATCCAATCTCCTGCCTCGAGTATTGAAGCCTGGCTACTGTGACTGTGG FLLKTLNGSEMASATLFKK|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8872 SCML2::ENSG00000289084 ENSG00000102098.19::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1559 TRUE 616 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18320332:- chrX:18257433-18372808:- chrX:18338452:- ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23223520:- chrX:22277914-23311263:- chrX:23241637:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication low none mbt_repeat(51%)| MBT(94%)| 1 0 1 59 1 ENST00000251900.9 unknown upstream downstream duplicates(4) GTCGATTCCCCAGACATACAACCTGTTGGGACATGTGAAAAGGAAGGAGACTTACTTCAACCTCCACTAG___GGTACCAGATGAATACATCCTCCTGGCCGATGTTCCTCTTAAAGACACTAAATGGGTCTGAAATGGCATCTGCCACATTATTTAAGAAG|ATTCCTTTACTCATAGGTAGCGGATGGGGAAAAAACATGAAGAACTACAAATGGCAGATTTTGA VDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKK|iplligsgwgknmknykwqil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8873 SCML2::ENSG00000289084 ENSG00000102098.19::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1559 TRUE 616 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18323859:- chrX:18257433-18372808:- chrX:18341979:- ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23064121:- chrX:22277914-23311263:- chrX:23082238:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none mbt_repeat(49%)| MBT(5%)| 1 0 0 81 2 ENST00000251900.9 ENST00000687248.1 upstream downstream none GGCGGTGTGAAGCTCGGTGCCGGCTCGCGCGATCGGTGGGgCAGAATTTCGTTGTTTTCACCGACGAGACTGGAG___GAAAaAACACCAAATAGGGATACCAT...CCCAGACATACAACCTGTTGGGACATGTGAAAAGGAAGGAGACTTACTTCAACCTCCACTAG|AGATGAACCATCCAATCTCCTGCCTCGAGTATTGAAGCC PDIQPVGTCEKEGDLLQPPL|emnhpiscley* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8874 SCML2::ENSG00000289084 ENSG00000102098.19::ENSG00000289084.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1559 TRUE 616 SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18324907:- chrX:18257433-18372808:- chrX:18343027:- ENSG00000289084 ENSG00000289084.1 lncRNA - - chrX:22259797-23293146:- chrX:23064121:- chrX:22277914-23311263:- chrX:23082238:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 1 0 75 2 ENST00000251900.9 ENST00000687248.1 upstream downstream none GAAAGAGACTGGGTCTATAAGTGCTCCTTCAGAGTGCTTCCGTCAG|AGATGAACCATCCAATCTCCTGCCTCGAGTATTGAAGCCTGGCTACTGTGACTGTGGG KETGSISAPSECFRQ|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8879 ZCWPW2::LRRC3B ENSG00000206559.8::ENSG00000179796.13 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28435269:+ chr3:28390212-28579613:+ chr3:28476760:+ LRRC3B ENSG00000179796.13 protein_coding + + chr3:26622772-26717537:+ chr3:26709513:+ chr3:26664263-26759028:+ chr3:26751004:+ chr3:28461731 chr3:26679299 NA NA chr3:28503222 chr3:26720790 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none CW-type_Zinc_Finger(100%),PWWP_domain(77%)|Leucine_Rich_Repeat(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_N-terminal_domain(100%) PWWP(33%),zf-CW(100%)|LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%) 2 0 0 10 4 ENST00000383768.7 ENST00000648296.1 downstream upstream duplicates(3) GAAAAATTGGATGTTAAGATTGAATATTGTAACTATGCAATGGATTCCTCAGTGGAAAACATGTATGTAAACAAAGTGTGGGTTCAATGTGAGAATGAAAA...GTTTTGGTAAAATTACAGAATTGGCCAAG___TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGA...AGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG|GTGCCCAAGCAAGGAAAGAAATAATGAAGAGAC EFLGDPHSRSWIKATFVGHYSITLK|vpkqgkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8880 SYN2::TRANK1 ENSG00000157152.17::ENSG00000168016.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1561 TRUE 617 SYN2 ENSG00000157152.17 protein_coding + + chr3:12004388-12192032:+ chr3:12004928:+ chr3:12045862-12233532:+ chr3:12046428:+ TRANK1 ENSG00000168016.15 protein_coding - - chr3:36826819-36945057:- chr3:36874296:- chr3:36868310-36986548:- chr3:36915787:- chr3:12138355,chr3:12138354 chr3:36889394,chr3:36889395 NA NA chr3:12179855,chr3:12179854 chr3:36930885,chr3:36930886 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Synapsin_N-terminal(100%),Synapsin__N-terminal_domain(14%)| Synapsin(0%),Synapsin_N(100%)| 1 0 1 8 35 ENST00000621198.5 ENST00000429976.5 downstream downstream none GCCGCCTCGGCTGGCCTGGTGGACGCGCCCGCTCCCGCGCCCGCAGCCGCCAGGAAGGCCAAGGTGCTGCTGGTGGTCGACGAGCCGCACGCCGACTG|GACAAACAGAGGATGTGCAGATGCTCCTGCG...ATCCCACTTTGCTGGATCGACAGTCTCGGTCTGTTGTGGATGTCCTGAAGAGGAATAAGAACTTCAAAGCCATCGAGAAAATCAACAGTCACTTAGAAAAG AASAGLVDAPAPAPAAARKAKVLLVVDEPHADw|tnrgcadap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8881 SYN2::TRANK1 ENSG00000157152.17::ENSG00000168016.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1561 TRUE 617 SYN2 ENSG00000157152.17 protein_coding + + chr3:12004388-12192032:+ chr3:12004928:+ chr3:12045862-12233532:+ chr3:12046428:+ TRANK1 ENSG00000168016.15 protein_coding - - chr3:36826819-36945057:- chr3:36864480:- chr3:36868310-36986548:- chr3:36905971:- chr3:12138355,chr3:12138354 chr3:36889394,chr3:36889395 NA NA chr3:12179855,chr3:12179854 chr3:36930885,chr3:36930886 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Synapsin_N-terminal(100%),Synapsin__N-terminal_domain(14%)| Synapsin(0%),Synapsin_N(100%)| 0 1 0 8 49 ENST00000621198.5 ENST00000429976.5 downstream downstream none GTCGACGAGCCGCACGCCGACTG|GATTCAGCAATGGTGATGGACCCACTAGTGAAAACGACATTTTCAGGAAGGTCTTGGAGCAGCTGGTGAAGTATATGAACTCAGGAAACCGGTTATTGCATAAAAACTTTCTGAAGCAGGAAGTAGTTCAGAGGTTCTTGCGTC VDEPHADw|iqqw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8899 RFTN1::PLCL2 ENSG00000131378.14::ENSG00000154822.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RFTN1 ENSG00000131378.14 protein_coding - - chr3:16313574-16514026:- chr3:16433929:- chr3:16355081-16555533:- chr3:16475436:- PLCL2 ENSG00000154822.18 protein_coding + - chr3:16802651-17090604:+ chr3:17048992:- chr3:16844159-17132096:+ chr3:17090484:- chr3:16426634 chr3:17063404 NA NA chr3:16468141 chr3:17104896 NA NA sense antisense unknown CDS intron duplication/5'-5' low none Raftlin(18%)| Raftlin(37%)| 0 0 4 121 5 ENST00000334133.9 unknown upstream downstream none CCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTT...|...TATCCTGAAATAGCAGTCAACTGCAGACCTCAATCTATGGTATATACTAAGCAATTCAACTCTTTCTTGTAATGTCATGACTCTTCTCTGCTTCTTGGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8908 TRANK1::ANKRD28 ENSG00000168016.15::ENSG00000206560.12 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRANK1 ENSG00000168016.15 protein_coding - - chr3:36826819-36945057:- chr3:36944894:- chr3:36868310-36986548:- chr3:36986385:- ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15796490:- chr3:15708743-15901278:- chr3:15837997:- chr3:36938898,chr3:36938901 chr3:15852975,chr3:15852975 NA NA chr3:36980389,chr3:36980392 chr3:15894482,chr3:15894482 NA NA sense sense unknown 5'UTR CDS deletion low none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 0 0 3 5 12 ENST00000429976.5 ENST00000451422.1 upstream downstream mismatches(1) CTGATCGCGGCTGGGTAGCCGAGCCGCAGGCAGCTGGGGGCCCCCGAACGCCGCCTCTGCATCGCGCCGCCCCTGCCCCGGGCTCCGGTAGCTTTCGGGCT...|...AGGTAGAAGATGAATCTCCTGCATTCATTTCTAAATTGCCACAGGAAAATAAATCCCTACATTCTCCACCTTCTGGAAATGTATTGGTAAGATAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-3134 chr3:15697298-15697371:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8917 TSEN2::TBC1D5 ENSG00000154743.19::ENSG00000131374.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12484517:+ chr3:12525920-12583048:+ chr3:12526016:+ TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:18066765:- chr3:17198654-18486309:- chr3:18108257:- chr3:12489112,chr3:12489109 chr3:18071595,chr3:18071595 NA NA chr3:12530611,chr3:12530608 chr3:18113087,chr3:18113087 NA NA sense sense unknown 5'UTR/splice-site intron inversion low none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 0 2 0 7 9 ENST00000681482.1 unknown downstream downstream none CAGCGGTGTCCGCCCCACGGCCGGCGTTGCCGGGGTAACGGCGAGCGCGTGGGGCCAAGAAAG|GTATTTCACATCATGACATCAGAACTCATGGAGGCATCAGAAGACATCTATAAGGCCAAGCTATGATTGTCCTGTACTATGAAATCAAAGATAACTACCTCCAAGCTTCAGAATTGTGCTCATTTGGG...TCTCTCAGCCTCTCTGGCCTTCTCTGTCCACCAACATGCTTTCTTATGTTATGGACTGCAGGAGTAGTTCAGTAGATCCCCCACAGATCAGAAGACTGTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8918 ENSG00000283563::LRRC3B ENSG00000283563.1::ENSG00000179796.13 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28435269:+ chr3:28390669-29809028:+ chr3:28476760:+ LRRC3B ENSG00000179796.13 protein_coding + + chr3:26622772-26717537:+ chr3:26709513:+ chr3:26664263-26759028:+ chr3:26751004:+ chr3:28461731 chr3:26679299 NA NA chr3:28503222 chr3:26720790 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |Leucine_Rich_Repeat(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_N-terminal_domain(100%) PWWP(33%),zf-CW(100%)|LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%) 2 0 0 10 4 ENST00000635992.1 ENST00000648296.1 downstream upstream duplicates(3) GAAAAATTGGATGTTAAGATTGAATATTGTAACTATGCAATGGATTCCTCAGTGGAAAACATGTATGTAAACAAAGTGTGGGTTCAATGTGAGAATGAAAA...GTTTTGGTAAAATTACAGAATTGGCCAAG___TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGA...AGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG|GTGCCCAAGCAAGGAAAGAAATAATGAAGAGAC EFLGDPHSRSWIKATFVGHYSITLK|vpkqgkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8930 CAP1::HPCAL4 ENSG00000131236.18::ENSG00000116983.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40067717:+ chr1:40505905-40538321:+ chr1:40533389:+ HPCAL4 ENSG00000116983.13 protein_coding - - chr1:39678648-39691485:- chr1:39684611:- chr1:40144320-40157157:- chr1:40150283:- chr1:40069295,chr1:40069295,chr1:40069295 chr1:39690605,chr1:39690604,chr1:39690614 NA NA chr1:40534967,chr1:40534967,chr1:40534967 chr1:40156277,chr1:40156276,chr1:40156286 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site inversion high none Adenylate_cyclase_associated_(CAP)_N_terminal(100%)|EF-hand_domain_pair(100%),EF_hand(100%) CAP_N(100%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%) 69 47 62 9993 398 ENST00000372797.7 ENST00000617690.2 downstream downstream duplicates(36),low_entropy(2),mismatches(68) ACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACCACCGGACTGGCCTGGAGCAAAACG___GGGCCTGTGGCAAAAGAACTGAGCGGACTGCCATCTGGACCCTCTGCCGGATCAgGTCCTCCTCCCCCTCCACCAgGCCCCCCTCCTCCCCCAGTCTCTACCAgTTCAgGCTCAgATGAGTCTGCTTCCCGCTCAgCACTGTTCGCGCAGATTAATCAGGGGGAGAGCATTACACATG|GCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCCGAGGTGCTGGAGGACCTTGTTCAGAACACTGAGTTCAGCGAGCAGGAGCTGAAGCAGTGGTACAAGGGCTTCCTGAAGGACTGCCCCAGtGGCATCCTCAACCTGGAGGAGTTTCAGCAGCTCTACATCAAG___TTCTTCCCCTACGGCGACGCCTCCAAGTTCGCGCAGCACGCTTTCCGCACCTTCGACAAGAACGGCGACGGCACCATCGACTTCCGGGAGTTCATCTGCGCCCTGTCGGTCACCTCC TELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAGSgPPPPPPgPPPPPVSTsSgSdESASRSaLFAQINQGESITH|gpaMGKTNSKLAPEVLEDLVQNTEFSEQELKQWYKGFLKDCPSGILNLEEFQQLYIKFFPYGDASKFAQHAFRTFDKNGDGTIDFREFICALSVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8932 TRIT1::ENSG00000227278 ENSG00000043514.17::ENSG00000227278.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1572 TRUE 618 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857246:- chr1:40303782-40349183:- chr1:40322918:- ENSG00000227278 ENSG00000227278.1 lncRNA - - chr1:40514461-40515057:- chr1:40514634:- chr1:40980133-40980729:- chr1:40980306:- chr1:39856445,chr1:39856263,chr1:39856447 chr1:40515349,chr1:40515345,chr1:40515348 NA NA chr1:40322117,chr1:40321935,chr1:40322119 chr1:40981021,chr1:40981017,chr1:40981020 NA NA sense sense out-of-frame intron exon/splice-site duplication high none IPP_transferase(17%)| AAA_33(100%),IPPT(72%),IPT(100%)| 55 21 43 6072 2894 ENST00000316891.10 ENST00000453437.1 upstream downstream duplicates(28),mismatches(8),multimappers(4) GGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG___GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTGATATCCTTAGGAAAGGCAGCAGCTGGGTTTG|GTCCAGAAACTCCAGGAACTCTGAGTCACTCAAGTCTGAGAACCCTGAGGCTTCTGCTGACACTGTCTCCTCTTCTCTTGTCTCTGCCATGGTACAGCTCTGGATTGGGCTAGAAGGGCCCTGCATAACATGTTAAAGAAATGCATTGTTCAAATA GLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATALislgkaaagf|gpetpgtlshsslrtlrllltlsplllslpwyssglg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8933 TRIT1::ENSG00000227278 ENSG00000043514.17::ENSG00000227278.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1572 TRUE 618 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857278:- chr1:40303782-40349183:- chr1:40322950:- ENSG00000227278 ENSG00000227278.1 lncRNA - - chr1:40514461-40515057:- chr1:40514635:- chr1:40980133-40980729:- chr1:40980307:- chr1:39856445,chr1:39856263,chr1:39856447 chr1:40515349,chr1:40515345,chr1:40515348 NA NA chr1:40322117,chr1:40321935,chr1:40322119 chr1:40981021,chr1:40981017,chr1:40981020 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none IPP_transferase(17%)| AAA_33(100%),IPPT(72%),IPT(100%)| 11 8 36 6197 2894 ENST00000316891.10 ENST00000453437.1 upstream downstream duplicates(6),mismatches(4),multimappers(2) CGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG___GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCT|GGTCCAGAAACTCCAGGAACTCTGAGTCACTCAAGTCTGAGAACCCTGAGGCTTCTGCTGACACTGTCTCCTCTTCTCTTGTCTCTGCCATGGTACAGCTCTGGATTGGGCTAGAAGGGCCCTGCATAACATGTTAAAGAAATGCATTGTTCAAATAAAAACGTTCTCAAAAG RTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATAl|vqklqel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8934 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1573 TRUE 619 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 24 32 36 2424 6104 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(18),low_entropy(1),mismatches(6) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTGATATCCTTAGGAAAGGCAGCAGCTGGGTTTGGTGGGTGAAAGCAGCCCAAGCCAAGAGAGAAGTTTTCTTTCTAGTGGCAATTTCTTCTCAGAAGGGGCACCCAAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATALislgkaaagfgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8935 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1573 TRUE 619 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39852876:- chr1:40303782-40349183:- chr1:40318548:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(70%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(15%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 6 2424 5740 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(1),mismatches(1) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGGCTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAG___GAGCTTGCAAGTTTTTG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|PQEMGTEKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8936 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1573 TRUE 619 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844640:- chr1:40303782-40349183:- chr1:40310312:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 1 2 3 2424 10570 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(1),mismatches(2) CTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GACCTGGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAATCGTGCAAAGTTTCATCCAG___GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGAATGGGCAG___CGCACATAAAATCCAAATCCC GAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|dlvplsplsma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8937 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1573 TRUE 619 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844218:- chr1:40303782-40349183:- chr1:40309890:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 2 0 2 2424 13197 ENST00000372771.5 ENST00000316891.10 downstream downstream none CGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATAC...AACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGAATGGGCAG___CGCACATAAAATCCAAATCCCACTTGAACCAAC GKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|GHKPTATPIKMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8938 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1573 TRUE 619 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39841913:- chr1:40303782-40349183:- chr1:40307585:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(33%) |zf-C2H2_jaz(1%),zf-met(1%) 0 1 1 2424 15214 ENST00000372771.5 ENST00000316891.10 downstream downstream none CGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGgGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGATGCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCCAGACCATAACAAAGAACCTAAAGAGAAGGGATCCCCAGG GLRPCLWQLETELREQEgSEVSSLNYCRSFCQ|rt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8939 PTPN4::CFAP221 ENSG00000088179.9::ENSG00000163075.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 902 TRUE 1574 TRUE 620 PTPN4 ENSG00000088179.9 protein_coding + + chr2:119759922-119984899:+ chr2:119862643:+ chr2:120517498-120742475:+ chr2:120620219:+ CFAP221 ENSG00000163075.13 protein_coding + + chr2:119544432-119662251:+ chr2:119646958:+ chr2:120302008-120419827:+ chr2:120404534:+ chr2:119876710,chr2:119876711 chr2:119641318,chr2:119641316 NA NA chr2:120634286,chr2:120634287 chr2:120398894,chr2:120398892 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FERM_N-terminal_domain_(78%)| FERM_N(78%)| 12 19 33 184 36 ENST00000263708.7 ENST00000413369.8 downstream upstream duplicates(13),mismatches(3) CCCGAGACAGACAGCATACTGAAGTGGTTTGCAACATCCTTCTTCTGGATAACACTGTACAAGCTTTCAAAGTCAAT___AAACATGATCAGGGGCAAGTCTTGTTGGATGTCGTCTTCAAGCATCTAGATTTGACTGAGCAGGACTATTTTGGTTTACAGTTGGCTGATGATTCCACAGATAACCCA|CTGCGATTCCTTCAATTCATTTATGCTTCCGATAGACGTCCCTGCCATCCTTGATGCCTTACCAGAAGAGGACAGACTAGAAACAGTAGAACG___TGAGCTCTGTGAGCAGAATGTAGAAGTTATGTTGACTCCAGAAATGATCAAAGTGGAATTCCCTATGTTGAACTACAAGGACATCAGGAAGGAGAA___AGAAGTGAAAGATCAAGCACAACCAGCAGAGAAGGCCGGAGAGAAGCTGCTCGAGGAGATGAGGAA RDRQHTEVVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYFGLQLADDSTDNP|lrflqfiyasdrrpchp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8940 PTPN4::CFAP221 ENSG00000088179.9::ENSG00000163075.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 903 TRUE 1574 TRUE 620 PTPN4 ENSG00000088179.9 protein_coding + + chr2:119759922-119984899:+ chr2:119862643:+ chr2:120517498-120742475:+ chr2:120620219:+ CFAP221 ENSG00000163075.13 protein_coding + + chr2:119544432-119662251:+ chr2:119651974:+ chr2:120302008-120419827:+ chr2:120409550:+ chr2:119876710,chr2:119876711 chr2:119641318,chr2:119641316 NA NA chr2:120634286,chr2:120634287 chr2:120398894,chr2:120398892 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FERM_N-terminal_domain_(78%)| FERM_N(78%)| 17 13 21 184 64 ENST00000263708.7 ENST00000413369.8 downstream upstream duplicates(10),mismatches(1) CCTACAATGTACGAGCATCAGAGTTGGCCCGAGACAGACAGCATACTGAAGTGGTTTGCAACATCCTTCTTCTGGATAACACTGTACAAGCTTTCAAAGTCAAT___AAACATGATCAGGGGCAAGTCTTGTTGGATGTCGTCTTCAAGCATCTAGATTTGACTGAGCAGGACTATTTTGGTTTACAGTTGGCTGATGATTCCACAGATAACCCA|TGAGCTCTGTGAGCAGAATGTAGAAGTTATGTTGACTCCAGAAATGATCAAAGTGGAATTCCCTATGTTGAACTACAAGGACATCAGGAAGGAGAA___AGAAGTGAAAGATCAAGCACAACCAGCAGAGAAGGCCGGAGAGAAGCTGCTCGAGGAGATGAGGAACCTGCGGGGCAA YNVRASELARDRQHTEVVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYFGLQLADDSTDNP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8941 ZFP69::ENSG00000284719 ENSG00000187815.10::ENSG00000284719.3 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1575 TRUE 621 ZFP69 ENSG00000187815.10 protein_coding + + chr1:40477290-40496343:+ chr1:40479488:+ chr1:40942962-40962015:+ chr1:40945160:+ ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39808002:+ chr1:40265091-40275122:+ chr1:40273674:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 9 23 30 734 344 ENST00000372706.6 ENST00000687094.1 downstream upstream duplicates(3),inconsistently_clipped(1),mismappers(4),mismatches(3) CCTGAGGGCAGGTGATTGGAATCTGAGCAACACCCCACAACTGTGAAGCGTCTCATCAAGAGCTTCTGGCAATTTCCTCACCAGAAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG|GCTGGAGTGCAGTGGCGTGATCTCGGCTAGCTACAACCTCCACCTCCCAGCCGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCTGGCCGCCACCCCGTCTGGGAAGTGAGGAGCGCCTCTGCCCGGCCGTGACCCtGTCTGGGAACTGAGGAGTGTCTCTGCCCGACCGCCACCCCATCTGGGAG___GCCCAGCATCCAATTCAGTCGCCTTCAAG MPQQLLITLPTEASTWVKLQHPKKAVEGAPLWEDVTKMFEGE|gwsava* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8942 ZFP69::ENSG00000284719 ENSG00000187815.10::ENSG00000284719.3 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1575 TRUE 621 ZFP69 ENSG00000187815.10 protein_coding + + chr1:40477290-40496343:+ chr1:40479488:+ chr1:40942962-40962015:+ chr1:40945160:+ ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39809062:+ chr1:40265091-40275122:+ chr1:40274734:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 0 0 734 181 ENST00000372706.6 ENST00000687094.1 downstream upstream mismatches(1) CTTGATTTAAAGGGGAGTTTGTTTTCCAGAATTGTTAAAGTCACATCAGTCTCTAGGAACCCCCAGGcCCTGGTGCTGCAGGGACACACCAGAGTCCTGAG...CTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG|GCCCAGCATCCAATTCAG WVKLQHPKKAVEGAPLWEDVTKMFEGE|gpasns NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8945 EXO5-DT::SMAP2 ENSG00000238287.1::ENSG00000084070.12 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 906 FALSE NA FALSE NA EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40508589:- chr1:40958829-40974333:- chr1:40974261:- SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40413016:+ chr1:40810522-40888998:+ chr1:40878688:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none none 0 35 3 1285 3678 ENST00000450713.1 ENST00000372718.8 upstream upstream duplicates(6) CAGAAATCCGTCTCTGTGAGCGGAGGAGGGTG[c]TGCTTATGCGAGAGCAGGTTTTGGGAGCTCACTAAAGCAG|AAAGAAAAAGATGACAAGTGGAAAAGAGGGAGCGAACCAGTTCCAGAAAAAAAATTGGAACCTGTTGTTTTTGAGAAGGTGAAAATG___CCACAGAAAAAAGAAGACCCACAGCTACCTCGGAAAAGCTCCCCGAAATCCACAGCGCCTGTCATGGATTTGTTGGGCCTTG___ATGCTCCTGTGGCCTGCTCCATTGCAAATAGTAAGACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8947 CCDC102B::LINC02864 ENSG00000150636.17::ENSG00000263711.6 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CCDC102B ENSG00000150636.17 protein_coding + + chr18:68715209-69055189:+ chr18:68846421:+ chr18:66382446-66722426:+ chr18:66513658:+ LINC02864 ENSG00000263711.6 lncRNA - - chr18:73151241-73264480:- chr18:73200789:- chr18:70818476-70931715:- chr18:70868024:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 7 11 5 50 23 ENST00000360242.9 ENST00000581011.5 downstream downstream duplicates(4),mismatches(1) GGAAACGGTGAAACGAAAACTGGGCTGAGACTGAAAGCAATAAATCTGCCTTTGGAAAATGAAGTAACTGAAATTTCAGCTTTGCAGGTGCATTTGGATGAATTCCAAAAAATCTTATGGAAGGAAAGAGA___AATGCGCACAGCTTTGGAAAAAGAAATAGAGAGACTGGAGTCGGCTTTGTCTCTGTGGAAGTGGAAGTATGAAGAACTGAAAGAATCAAAGCCAAAAAATGTGAAAGAG|TTATGCCTCCATTTTCCTCTGCTGCATGGCCCCAGGAGAGATTTTAATTAGCTTTCTAACCTTGGTCCAGATTGCACATGCAAATGGTAGAGGATGCAACACCCCCGCTTGTGGAGCTGCCGCTTGTGTCTGGCATG___AAAATTCACAAGAAGAGAGGAAATACTGAGGAGAAAATGGCAGAT GNGETKTGLRLKAINLPLENEVTEISALQVHLDEFQKILWKEREMRTALEKEIERLESALSLWKWKYEELKESKPKNVKE|lclhfpllhgprrdfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8952 NT5C1A::RIMS3 ENSG00000116981.4::ENSG00000117016.10 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1578 TRUE 622 NT5C1A ENSG00000116981.4 protein_coding - - chr1:39651229-39672107:- chr1:39671904:- chr1:40116901-40137779:- chr1:40137576:- RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40647842:- chr1:41086352-41131354:- chr1:41113514:- chr1:39666287,chr1:39666289,chr1:39666293,chr1:39666291,chr1:39666296,chr1:39666294 chr1:40656903,chr1:40656904,chr1:40656905,chr1:40656904,chr1:40656904,chr1:40656904 NA NA chr1:40131959,chr1:40131961,chr1:40131965,chr1:40131963,chr1:40131968,chr1:40131966 chr1:41122575,chr1:41122576,chr1:41122577,chr1:41122576,chr1:41122576,chr1:41122576 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |C2_domain(100%) |C2(100%) 3 3 8 19 249 ENST00000235628.2 ENST00000372684.8 upstream downstream duplicates(1),mismatches(1) GCCGCCGCCTGCTCTGGCCGGGCCGGGTCAGAGCCGGAGCATGGAACCTGGGCAGCCCCGGGAGCCCCAGGAGCCCCGCGAGCCCGGGCCAGGAGCGGAGACCGCTGCGGCCCCGGTCTGGGAGGAAGCCAAGATTTTCTACGACAACCTCGCGCCCAAGAAGAAACCCAAATCG|ACCCTTTTATCACATCGCCTCCT[c]CTGGGAGCCTGCCCTGATTGCCTTCACCTCATTTCTTGAAAATTGGTGTTTTGGCAGAAGTCAATTGAAGCCTTGTGCAAATGCCCTAGGGGTGTGCTGTTGGGAGGCAGCCCCCTGTGATGCGGAACACCAGGCTCAGATTCATCAGTTCG___AGCTGCCTGAGGCCCTcCCACCCCGGGGACCATGTTTAACGGGGAGCCAGGTCCTGCCTCATCTGGGGCCTCC MEPGQPREPQEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKS|tllshrlllgacpdclhlis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8954 NT5C1A::RIMS3 ENSG00000116981.4::ENSG00000117016.10 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1578 TRUE 622 NT5C1A ENSG00000116981.4 protein_coding - - chr1:39651229-39672107:- chr1:39671904:- chr1:40116901-40137779:- chr1:40137576:- RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40641956:- chr1:41086352-41131354:- chr1:41107628:- chr1:39666287,chr1:39666289,chr1:39666293,chr1:39666291,chr1:39666296,chr1:39666294 chr1:40656903,chr1:40656904,chr1:40656905,chr1:40656904,chr1:40656904,chr1:40656904 NA NA chr1:40131959,chr1:40131961,chr1:40131965,chr1:40131963,chr1:40131968,chr1:40131966 chr1:41122575,chr1:41122576,chr1:41122577,chr1:41122576,chr1:41122576,chr1:41122576 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none |C2_domain(100%) |C2(100%) 1 0 2 19 357 ENST00000235628.2 ENST00000372684.8 upstream downstream none CTGCTCTGGCCGGGCCGGGTCAGAGCCGGAGCATGGAACCTGGGCAGCCCCGGGAGCCCCAGGAGCCCCGCGAGCCCGGGCCAGGAGCGGAGACCGCTGCGGCCCCGGTCTGGGAGGAAGCCAAGATTTTCTACGACAACCTCGCGCCCAAGAAGAAACCCAAATCG|AGCTGCCTGAGGCCCTcCCACCCCGGGGACCATGTTTAACGGGGAGCCAGG...CTGGGGCCTCCAGGAATGTGGTGCGGAGCTCCAGCATTAGCGGTGAAATCTGCGGATCCCAGCAAGCCGGGGGCGGGGCTGGGACCACCACCGCCAAGAAGCGGCGGAGCAGCCTGGGTGCCAAGATGGTG MEPGQPREPQEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKS|sclrpshpgdhv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8956 ADK::KAT6B ENSG00000156110.15::ENSG00000156650.14 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525426:+ chr10:75910960-76469721:+ chr10:76285184:+ KAT6B ENSG00000156650.14 protein_coding + + chr10:74824927-75032624:+ chr10:75020582:+ chr10:76584685-76792382:+ chr10:76780340:+ chr10:74551336,chr10:74551329 chr10:75019405,chr10:75019395 NA NA chr10:76311094,chr10:76311087 chr10:76779163,chr10:76779153 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none pfkB_family_carbohydrate_kinase(63%)|MOZ/SAS_family(42%) PfkB(63%)|MOZ_SAS(0%) 2 1 8 10 7 ENST00000673352.1 ENST00000648369.1 downstream upstream duplicates(1),mismatches(1) GCAACATTTTTTGGATGCATTGGGATAGATAAATTTGGGGAGATCCTGAAGAGAAAAGCTGCTGAAGCCCATGTGGATGCTCATTACTACGAGCAGAATGAGCAGCCAACAGGAACTTGTGCTGCATGCATCACTGGTGACAACAG___GTCCCTCATAGCTAATCTTGCTGCTGCCAATTGTTATAAAAAGGAAAAACATCTTG...CAAGAGTTTGTTATATAGCA___GGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACA|GCTATTTGCTTTCTAGAAGAGAAGGCCAAGCAGGGTCTCCTGAAAAGCCTCTCTCCGATCTGGGCCGTCTCTCCTACCTGGCATATTGGAAGAGCGTCATCTTGGAGTATCTCTACCACCACCATGAGAGGCACATCAGCATCAAGGCAATTAGCA...GGCcTGTGCCCACATGACATTGCCACCACTCTGCAGCACCTCCACATGATCGACAAGAGAGATGGCAG___ATTTGTCATCATTAGACGGGAAAAGTTGATATTGAGCCACATGGAAAAGCTGAAAACCTGTTCCAG RVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNET|AICFLEEKAKQGLLKSLSPIWAVSPTWHIGRASSWSISTTTMRGTSASRQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE K(lysine) acetyltransferase 6B 1 AML, leiomyoma leukaemia_lymphoma, mesenchymal TSG, fusion translocation 8957 ZFP69B::PPIE ENSG00000187801.15::ENSG00000084072.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40454288:+ chr1:40915774-40929390:+ chr1:40919960:+ PPIE ENSG00000084072.17 protein_coding + - chr1:39692182-39763914:+ chr1:39719657:- chr1:40157854-40229586:+ chr1:40185329:- chr1:40456717,chr1:40456718 chr1:39737464,chr1:39737463 NA NA chr1:40922389,chr1:40922390 chr1:40203136,chr1:40203135 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none SCAN_domain(100%)| SCAN(100%)| 1 3 6 527 36 ENST00000411995.6 unknown downstream downstream duplicates(1),mismatches(1) CATCCAAAGGCGGCCACGGAGCGGGTGGCCCTGTGGGAGGATGTGACTAAGATGTTTAAAGCAGAAG___CTCTGCTGTCTCAGGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGTAGAGTGACCCTTGGATCCCTGACAGCAGAATCCCAG|GGGTTCCCTTACATACTGCAATCAAAAGACATCTTCTGCTCAGAATCACAACAGATAGTGAGTGGTTCAAGTGAGAAGTAATGTTATATAGTAAGTTACTGAATCTACAATGAGAAATTGAACTCTGGGGCCACAACTCAAATATGATTTCAAGGTAAAGAATATAATTACTTGGCTGGCTAGTGAAACGCTTATTTCCTTCTAAAATCATAATTGCAATATGGACTTCTGCTTCATGCTGCATCCCAAGGCACAAATCAGGTAACCTACATCTGCCAAATGATCAACAGAGCATTCCTTCCTATTTTACCCTCAATGCTGAGA HPKAATERVALWEDVTKMFKAEALLSQDADETQGESLESRVTLGSLTAESQ|gfpyilqskdifcsesqqivsgssek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8960 CUL2::FRMD4A ENSG00000108094.17::ENSG00000151474.23 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1579 FALSE NA CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35025132:- chr10:35297432-35415934:- chr10:35314060:- FRMD4A ENSG00000151474.23 protein_coding - - chr10:13643706-14462142:- chr10:13707113:- chr10:13685706-14504141:- chr10:13749113:- chr10:35021970,chr10:35021972 chr10:13733321,chr10:13733320 NA NA chr10:35310898,chr10:35310900 chr10:13775321,chr10:13775320 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cullin_family(86%)|Cytohesin_Ubiquitin_Protein_Inducing_Domain(100%),FERM_C-terminal_PH-like_domain(71%) Cullin(77%)|CUPID(100%),FERM_C(15%),Prp18(100%) 1 3 0 198 49 ENST00000626172.3 ENST00000357447.7 upstream downstream mismatches(2) TTTCAAATATATGTTCTACAG___GCTGGTGCGTGGCCTCTTACTCAGGCTCCTTCATCTACGTTTGCAATTCCCCAGGAATTAGAAAAAAGTGTACAGATG___TTTGAATTATTTTATAGCCAACATTTCAGTGGAAGGAAACTTACATGGTTACATTATCTGTGTACAG|ATATTCCAATGGAGACAGTTGGAAAACCTGTACTTCAGAGAAAAGAAGTTTTCCGTGGAAGTTCATGACCCACGCAG___GGCTTCAGTGACAAGGAGGACGTTTGGGCACAGCGGCATTGCAGTGCACACGTGGTATGCATGTCCGGCATTGATCAAGTCCATCTGGG...CCAAAATCCATGCAGCACGCAGCCTGAGTGAGATCGCCATCGACCTGACCGAGACGGGGACGCTGAAGACCTCGAAGCTGGCCAACATGGGTAGCAAGGGGAAGATCATCAGCGGCAGCAGCGGCAGCCTGCTGTCTTCAG___GTTCTCAG FQIYVLQAGAWPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTWLHYLCT|dipmetvgkpvlqrkevfrgss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3611 chr10:35079598-35079680:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8964 CCDC102B::DOK6 ENSG00000150636.17::ENSG00000206052.11 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC102B ENSG00000150636.17 protein_coding + + chr18:68715209-69055189:+ chr18:68874785:+ chr18:66382446-66722426:+ chr18:66542022:+ DOK6 ENSG00000206052.11 protein_coding + + chr18:69400888-69849087:+ chr18:69841244:+ chr18:67068124-67516323:+ chr18:67508480:+ chr18:68877990 chr18:69795375 NA NA chr18:66545227 chr18:67462611 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 2 1 0 30 232 ENST00000360242.9 ENST00000382713.10 downstream upstream duplicates(1) CTGGAGTCGGCTTTGTCTCTGTGGAAGTGGAAGTATGAAGAACTGAAAGAATCAAAGCCAAAAAATGTGAAAGAG___TTTGACATTCTTCTTGGTCAACATAATGATGAAATGCAAGAACTGTCAGGCA...AGGAAGAATCCAAATCTCAAAACAGCAAAGACAGAGTGATTTGTGAGTTAAGAGCAGAG|GTCATGGGTTTGGTTCGTCAAAGATGTCTCGTGCACAGACATTTCCCAGCTACGCCCCAGAACAGAGTGAAGAGGCCCAGCAGCCGTTGTCGCGGTCCAGCAGCTATGGATTCAGCTACAGCTCCAGCCTCA EESKSQNSKDRVICELRAE|vmglvrqrclvhrhfpatpqnrvkrpssrcrgpaamdsatapa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8972 RLF::COL9A2 ENSG00000117000.9::ENSG00000049089.15 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1581 FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40312784:- chr1:40766161-40783485:- chr1:40778456:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Collagen_triple_helix_repeat_(20_copies)(87%) |Collagen(35%) 1 0 6 2424 12889 ENST00000372771.5 ENST00000372748.8 downstream downstream duplicates(2),mismatches(1) GCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTtTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGTTTAACTGGAGCCAAGGGGGAGCCTGGCCCCATGGGGATCCCTGGAGTCAAG___GGCCAGCCCGGGCTTCCTGGTCCTCCTGGCCTTCCG___GGCCCTGGTTTTGCTGGACCTCCT___GGGCCTCCTGGACCTGTTGGCCTCCCTGGTGAG ADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|GLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8973 COL9A2::TRIT1 ENSG00000049089.15::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1582 TRUE 623 COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40311662:- chr1:40766161-40783485:- chr1:40777334:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- chr1:40311573,chr1:40311575 chr1:39849719,chr1:39849718 NA NA chr1:40777245,chr1:40777247 chr1:40315391,chr1:40315390 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Collagen_triple_helix_repeat_(20_copies)(28%)|IPP_transferase(35%),Zinc-finger_double-stranded_RNA-binding(100%) Collagen(81%)|IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 29 6 18 11570 7530 ENST00000372748.8 ENST00000316891.10 upstream downstream duplicates(9),mismatches(1) GGAAGCCCGGGATTGAT___GGTTTAACTGGAGCCAAGGGGGAGCCTGGCCCCATGGGGATCCCTGGAGTCAAG___GGCCAGCCCGGGCTTCCTGGTCCTCCTGGCCTTCCG___GGCCCTGGTTTTGCTGGACCTCCT___GGGCCTCCTGGACCTGTTGGCCTCCCTGGTGAGATTGGAATCCGAGGCCCCAAG___GGGGACCCTGGACCAGATGGACCATCGGGGCCCCCAGGACCCCCTGGGAAACCT|TTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAG___CCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTGATCACTGAGGGAAAATGCACA KPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKP|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8974 COL9A2::TRIT1 ENSG00000049089.15::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1582 TRUE 623 COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40311662:- chr1:40766161-40783485:- chr1:40777334:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848091:- chr1:40303782-40349183:- chr1:40313763:- chr1:40311573,chr1:40311575 chr1:39849719,chr1:39849718 NA NA chr1:40777245,chr1:40777247 chr1:40315391,chr1:40315390 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Collagen_triple_helix_repeat_(20_copies)(28%)|IPP_transferase(34%),Zinc-finger_double-stranded_RNA-binding(100%) Collagen(81%)|IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 15 11570 7530 ENST00000372748.8 ENST00000441669.6 upstream downstream duplicates(1),mismatches(1) GTTTTGCTGGACCTCCT___GGGCCTCCTGGACCTGTTGGCCTCCCTGGTGAGATTGGAATCCGAGGCCCCAAG___GGGGACCCTGGACCAGATGGACCATCGGGGCCCCCAGGACCCCCTGGGAAACCT|ATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAG___CCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTGATCACTGAGGGAAAATGCACACTGGAGAC FAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKP|msawirgwmtclllgswrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8978 EXO5-DT::PPT1 ENSG00000238287.1::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 912 TRUE 1583 TRUE 624 EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40508589:- chr1:40958829-40974333:- chr1:40974261:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40092507:- chr1:40538382-40562932:- chr1:40558179:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Palmitoyl_protein_thioesterase(86%) |Palm_thioest(79%) 2 12 6 1285 9223 ENST00000450713.1 ENST00000642050.2 upstream downstream duplicates(2) CAGAAATCCGTCTCTGTGAGCGGAGGAGGGTG[c]TGCTTATGCGAGAGCAGGTTTTGGGAGCTCACTAAAGCAG|GAGACAGCTGTTGCAATCCCTTAAGCATGGGTGCTATTAAAAAAATGGTGGAGAAGAAAATACCTGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACCCTGATGGAG___GACGTGGAGAACAGCTTCTTCTTGAATGTCAATTCCCAAGTAACAACAGTGTGTCAGGCACTTGCTAAGGATCCTAAATTGCAGCAAGGCTACAATGCTATGGGATTCTCCCAGGGAGGCCAATTTCT___GAGGGCAGTGGCTCAGAGATGCCCTTCACCTCCCATGATCAATCTGATCTCGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8979 EXO5-DT::PPT1 ENSG00000238287.1::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1583 TRUE 624 EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40508589:- chr1:40958829-40974333:- chr1:40974261:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089512:- chr1:40538382-40562932:- chr1:40555184:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Palmitoyl_protein_thioesterase(50%) |Palm_thioest(66%) 0 1 0 1285 9301 ENST00000450713.1 ENST00000642050.2 upstream downstream none GTCTCTGTGAGCGGAGGAGGGTG[c]TGCTTATGCGAGAGCAGGTTTTGGGAGCTCACTAAAGCAG|GgGTTTTTGGACTCCCTCGATGCCCAGGAGAGAGCTCTCACATCTGTGACTTCATCCGAAAAACACTGAATGCTGGGGCGTACTCCAAAGTTGTTCAGGAACG___CCTCGTGCAAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8981 ZFP69B::PPT1 ENSG00000187801.15::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40457439:+ chr1:40915774-40929390:+ chr1:40923111:+ PPT1 ENSG00000131238.18 protein_coding - + chr1:40072710-40097260:- chr1:40097129:+ chr1:40538382-40562932:- chr1:40562801:+ chr1:40461308 chr1:40095536 NA NA chr1:40926980 chr1:40561208 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none KRAB_box(100%),SCAN_domain(100%)| KRAB(100%),SCAN(100%)| 9 5 2 1224 10455 ENST00000411995.6 unknown downstream upstream duplicates(2),mismatches(1) CCAGGGCGAAAGTTTAGAGAGTAGAGTGACCCTTGGATCCCTGACAGCAGAATCCCAG___GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGA...AGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG___GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG|ATCACCAACGGCAGCGGCGCCGGCGGGTCCAGATGCTGCAGCGCCCGAGAAGCGCAGGTCCATGGCAGGAGAGCCACAGCCAAGAGCCACAGGCAGCCGGGCGACGCCATCTTCGCTGTGTCACATG?CCGCGGGCGCGAGACTCCGGGA?CCGCGC?CCGCCCGCCTGGGCGTGGCGCCGCCGGTTGCAGAcCGCAACCTGCGCATCCCGAACGGATGCCCAGCCTGATGGGCGTCGGCCCTACCCTGGAGCTTTCAGCGCGACAGGTCCCCCGCCAGACCCCGCTGGCCGAG LAPAHRNLYREVMLENYGNLVSVGCQLSKPGVISQLEKGEEPWLMERDISGVPSS|dhqrqrrrrvqmlqrprsagpwqeshsqepqaagrrhlrcvt?prardsg?rappawawrrrlqtatcasrtdaqpdgrrpypgafsatgpppdpagr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8982 ENSG00000284719::PPIE ENSG00000284719.3::ENSG00000084072.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 913 FALSE NA FALSE NA ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39805032:+ chr1:40265091-40275122:+ chr1:40270704:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39752910:+ chr1:40157854-40229586:+ chr1:40218582:+ chr1:39806762,chr1:39806763 chr1:39750474,chr1:39750472 NA NA chr1:40272434,chr1:40272435 chr1:40216146,chr1:40216144 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(50%) |Pro_isomerase(59%),TGF_beta(100%) 7 5 4 123 13003 ENST00000687094.1 ENST00000470213.5 downstream upstream duplicates(1),mismatches(2) AGCCGTATCCTTTCTGTGTGCAGTGGGGTGTGGGTTGTGTGGAGCCGCGGTGTCTGTGGAATTCACAGGCTGGGGCCGGAATCCATGGCCCCCGTCGCCGCTGCCACCCCCCAG___CCAACCTTTATAAGCTGCAGGAAATGGATTTCCTACTCTCCACCTTCTGATTGGGCTTGACCAACGGGGAGCACTGGCAGAAGACAAGCATGGGAGGAAAAAGAGATCAGG|GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTTCTTCCTGACATGTGACAAGACAGACTGGCTGGATGGCAAGCATGTGGTGTTTGGAGAGGTCACCGAAGGCCTAGATGTCTTGCGGCAAATTGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8983 TRIT1::PPT1 ENSG00000043514.17::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1584 TRUE 625 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40078658:- chr1:40538382-40562932:- chr1:40544330:- chr1:39877821 chr1:40080008 NA NA chr1:40343493 chr1:40545680 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Palmitoyl_protein_thioesterase(28%) AAA_33(0%),IPPT(0%),IPT(0%)|Palm_thioest(19%) 3 4 8 7392 15855 ENST00000316891.10 ENST00000642050.2 upstream downstream duplicates(4),mismatches(1) TCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GGTATCAATGAGTCCTACAAGAAAAACCTGATGGCCCTGAAGAAGTTTGTGATGGTGAAATTCCTCAATGATTCCATTGTGGACCCTGTAGATTCGGAG___TGGTTTGGATTTTACAGAAGTGGCCAAGCCAAGGAAACCATTCCCTTACAGGAGACCTCCCTGTACACACAG___GACCGCCTGGGGCTAAAGGA...TTCAGTTTTAGAAAAGGGAGTCTGTTCCAGATCAGTGCCAGAACTGTGCCCAGGCCCAAAGGAGACAACTAACTAAAGTAGTGAGATAGATTCTAAGGGC SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|GINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQDRLGLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8984 TRIT1::PPT1 ENSG00000043514.17::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1584 TRUE 625 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40074183:- chr1:40538382-40562932:- chr1:40539855:- chr1:39877821 chr1:40080008 NA NA chr1:40343493 chr1:40545680 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Palmitoyl_protein_thioesterase(8%) AAA_33(0%),IPPT(0%),IPT(0%)|Palm_thioest(0%) 1 0 2 7392 14463 ENST00000316891.10 ENST00000642050.2 upstream downstream none GGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GACCGCCTGGGGCTAAAGGAAATGGACAATGCAGGACAGCTAGTGTTTCTGGCTACAGAAGGGGACCATCTTCAGTTGTCTGAAGAATGGTTTTATGCCCACATCATACCATTCCTTGGATGAAACCCGTATAGTTCACAATAGAGCTCAG AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|DRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFLG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8990 TRIT1::EXO5-DT ENSG00000043514.17::ENSG00000238287.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40493688:- chr1:40958829-40974333:- chr1:40959360:- chr1:39863182,chr1:39863182,chr1:39863182 chr1:40507771,chr1:40507774,chr1:40507775 NA NA chr1:40328854,chr1:40328854,chr1:40328854 chr1:40973443,chr1:40973446,chr1:40973447 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none IPP_transferase(0%)| AAA_33(0%),IPPT(0%),IPT(0%)| 4 4 4 7392 562 ENST00000316891.10 ENST00000450713.1 upstream downstream duplicates(1),mismatches(1) GGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GTCCCTGATTCTGGTCTTGAATAGCGGAGGAGGAAAAGAAGATGATGGGGGAAAAGAAAAG---CCATTTATGCATCCCTCCCTAATTCAGTATCCGAGCATGAGGGAGTGTCAAGCTAGTGGGGAAGAAGAGAGGGTTTAGTTTTGAATGAAGT AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|vpdsgle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 8996 TRIT1::RIMS3 ENSG00000043514.17::ENSG00000117016.10 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1587 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40636057:- chr1:41086352-41131354:- chr1:41101729:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|C2_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|C2(100%) 1 0 2 7392 437 ENST00000316891.10 ENST00000372684.8 upstream downstream none GCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|AAGGGGCCACCAAGAAGCTGCGCAGCAACATCCGCCGGAGCACGGAGACAGGCATCGCGGTGGAGATGCGGAGCCGGGTCACACGCCAGGGCAGCCGGGAGTCCACCGATGGGAGCACCAACAGCAACAGCTCCGACGGCAC___GTTC AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|kgpprscaatsagarrqasrwrcgagsharaagsppmgaptataptar NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9032 NSUN6::ENSG00000235020 ENSG00000241058.4::ENSG00000235020.5 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NSUN6 ENSG00000241058.4 protein_coding - - chr10:18545561-18659285:- chr10:18616184:- chr10:18834490-18948214:- chr10:18905113:- ENSG00000235020 ENSG00000235020.5 lncRNA - - chr10:18206127-18261504:- chr10:18224334:- chr10:18495056-18550433:- chr10:18513263:- chr10:18615244,chr10:18615253 chr10:18225163,chr10:18225162 NA NA chr10:18904173,chr10:18904182 chr10:18514092,chr10:18514091 NA NA sense sense stop-codon CDS/splice-site exon/splice-site deletion/read-through low none none none 0 1 2 60 1 ENST00000377304.7 ENST00000625812.2 upstream downstream duplicates(1) AAAATCTGTTACTTGATGAACTTCAGAAG___AAAGAATATTAAAAAACAACAGTGTGAAGCCATTGTTGGAGCCCAGTGTGGCAATGCAGTTTTAAGAGGAGCCCATGTCTATGCCCCAGGAATTGTGTCAGCATCACAAT|GGAGAAGTTGAAAGAGGGAGG...CACGGAAG___CGAAAAATGGAGCCCGGCATTACCCTCCCCACTTTGCTTGCTAAGCTGCAGTGCAGAAGGCACCACTACTGCGCCCCCCAGCATGCTTTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9042 RLF::ENSG00000284677 ENSG00000117000.9::ENSG00000284677.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1596 TRUE 626 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ENSG00000284677 ENSG00000284677.1 lncRNA - - chr1:40436199-40450039:- chr1:40438566:- chr1:40901871-40915711:- chr1:40904238:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 2 0 2424 17 ENST00000372771.5 ENST00000642138.1 downstream downstream none GGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|ATTCCCAGTTTCACTGAGATTAAGCTCCAGTCTCCTGCGATGGTAGCTAACTTCAAAGTGTATCCTTTATTGGTTATCTTCCTTTTCCTATCTCATTTCCCCCTCTCCCTATTGGTATTTCCTGTGTTTCCTAAATAAACTATTTGCACTGCAATCCTTGTCTTAGGGTCTGCTTCTGAGATAACATAAACCAGGCAGTCACTGAATGCATG QLETELREQEVSEVSSLNYCRSFCQ|ipsfteiklqspamvanfkvypllviflflshfplsllvfpvfpk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9043 RLF::ENSG00000284677 ENSG00000117000.9::ENSG00000284677.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1596 TRUE 626 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ENSG00000284677 ENSG00000284677.1 lncRNA - - chr1:40436199-40450039:- chr1:40436611:- chr1:40901871-40915711:- chr1:40902283:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 1 0 2424 8 ENST00000372771.5 ENST00000642138.1 downstream downstream none CGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AAGACTGAACCAGTAGTTTCAGGAGAGGATAACACAGAGGAATCTCTGAACAGCAGGACACCAGGCACAGCTGAgGACAG EVSSLNYCRSFCQ|ktepvvsgednteeslnsrtpgtaed NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9044 CAP1::ENSG00000227278 ENSG00000131236.18::ENSG00000227278.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ENSG00000227278 ENSG00000227278.1 lncRNA - - chr1:40514461-40515057:- chr1:40514634:- chr1:40980133-40980729:- chr1:40980306:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 2 0 10476 2894 ENST00000372792.7 ENST00000453437.1 downstream downstream none GGCGGTTCTTGCCGGAAGCGGAGAGCGGCTGATCGCAGTCCGGgGGTGAGGCGGAACTCTGAG|GTCCAGAAACTCCAGGAACTCTGAGTCACTCAAGTCTGAGAACCCTGAGGCTTCTGCTGACACTGTCTCCTCTTCTCTTGTCTCTGCCATGGTACAGCTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9053 SH3BP4::SMPD4BP ENSG00000130147.16::ENSG00000152117.18 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 918 FALSE NA FALSE NA SH3BP4 ENSG00000130147.16 protein_coding + + chr2:234952017-235055714:+ chr2:234952170:+ chr2:235860661-235964358:+ chr2:235860814:+ SMPD4BP ENSG00000152117.18 transcribed_processed_pseudogene + + chr2:131492813-131521573:+ chr2:131520097:+ chr2:132250386-132279146:+ chr2:132277670:+ chr2:234966281,chr2:234966282 chr2:131519588,chr2:131519586 NA NA chr2:235874925,chr2:235874926 chr2:132277161,chr2:132277159 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 42 191 61 715 715 ENST00000392011.7 ENST00000438378.2 downstream upstream duplicates(59),mismatches(13) CCGCCGTGAGTCCCGCGGAGCCGCGCGCGCCCCCGGCTGGGCCGAGCCGCTGGCCGACGAGCGGAGCCTCAGGAGCCGGCGGGGACGCCATGCGAGCCAG|TTCGCAGGACAGATGGCGGCTCTGTGTTCCCGGGATGACTTCCTCGGCAGCTTCTGTCGCTACCACCTCACAGAACCTGGGCTGGCCAGCAGGCACCTGCTGAGTCCTGTGGGGCGGAGGCAGGTGGCCGGCCACACCCGCGGCCCCAGGCTCAGCCTGCGCTTCCTGGGCAGTTACCGGACGCTGGTCTCGCTGCTGCTGGCCTTCTTCGTGGCCTCTCTGTTCTGCGTCGGGCCCCTCCCATGCATGCTGCTGCTCACCCTGGGCTACGTCCTCTACGCCTCTGCCATGATACTGCTGACCGAGCGGGGGAAGCTGCACCAGCCCTGAAGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9054 CREBBP::SLX4 ENSG00000005339.15::ENSG00000188827.12 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 919 TRUE 1599 TRUE 627 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3596393:- chr16:3631182-3661607:- chr16:3646394:- chr16:3833718,chr16:3833722 chr16:3596505,chr16:3596506 NA NA chr16:3883719,chr16:3883723 chr16:3646506,chr16:3646507 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |BTB/POZ_domain(100%),Slx4_endonuclease(100%) |BTB(100%),Slx4(100%) 27 57 84 355 176 ENST00000262367.10 ENST00000294008.4 upstream downstream duplicates(48),low_entropy(2),mismappers(3),mismatches(11) CTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|GGCCTTATGCAGGAGCCCGTGCCGCCTCTGGTGCCACCTGAGCACTCAGAGCTGAGCGAGCGAAGGTCACCCGCTCTCCACGGCACCCCCACTGCAGGCTGTGGCTCCAGGGGCCCGTCGCCTTCGGCCAGCCAGAGGGAGCACCAGGCCCTGCAGGACCTCGTGGACCTGGCGAGGGAGGGACTGAGCGCCAGCCCGTGGCCCGGCAGTGGGGGCCTGGCTGGCTCGGAAGGGACTGCAG___GGTTGGACGTGGTGCCCGGCGGCCTTCCTCTGACTGGGTTTGTGGTGCCATCGCAGGACAAGCACCCGGACAGGGGCGGCCGCA GHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|GLMQEPVPPLVPPEHSELSERRSPALHGTPTAGCGSRGPSPSASQREHQALQDLVDLAREGLSASPWPGSGGLAGSEGTAGLDVVPGGLPLTGFVVPSQDKHPDRGGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oesophagus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 9055 CREBBP::SLX4 ENSG00000005339.15::ENSG00000188827.12 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1599 TRUE 627 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3592865:- chr16:3631182-3661607:- chr16:3642866:- chr16:3833718,chr16:3833722 chr16:3596505,chr16:3596506 NA NA chr16:3883719,chr16:3883723 chr16:3646506,chr16:3646507 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |BTB/POZ_domain(65%),Slx4_endonuclease(100%) |BTB(48%),Slx4(100%) 4 3 5 355 259 ENST00000262367.10 ENST00000294008.4 upstream downstream duplicates(5) CCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|GTGAACAATGAAGGCTTCTCCGCTGTAGAGGACGGGGTTCTGACCCAGCGTGTCCTGCTGGGTGACGTGAGCACCGAGGCCGCCCGCACGTTCCTGCACTATCTCTACACTGCGGACACTGGC PGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|VNNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTADT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oesophagus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 9056 CREBBP::SLX4 ENSG00000005339.15::ENSG00000188827.12 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1599 TRUE 627 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3594599:- chr16:3631182-3661607:- chr16:3644600:- chr16:3833718,chr16:3833722 chr16:3596505,chr16:3596506 NA NA chr16:3883719,chr16:3883723 chr16:3646506,chr16:3646507 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |BTB/POZ_domain(100%),Slx4_endonuclease(100%) |BTB(100%),Slx4(100%) 1 0 9 355 198 ENST00000262367.10 ENST00000294008.4 upstream downstream duplicates(4),mismatches(2) CCCAGGCCTCCTCAATAGTAACTCTGGCCATAGCTTAATTAATCAGGCTTCACAAGGGCAGGCGCAAGTCATGAATGGATCTCTTGGGGCTGCTGGCAGAGGAAGGGGAGCTGGAATGCCGTACCCTACTCCAGCCATGCAGGGCGCCTCGAGCAGCGTGCTGGCTGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG|CTCTCCCTCGGGCTGCTGGTTGCTGACTTTGGCGCCATGGTCAATAACCCACACCTGAGTGATGTCCAGTTTCAGACGGACAGCGGGGAGGTGCTTTACGCCCACAAGTTCGTGCTTTATGCCCGATGCCCGCTCCTCATCCAGTAT___GTGAACAATGAAG PGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAK|LSLGLLVADFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCPLLIQYVNNE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oesophagus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 9057 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 920 FALSE NA FALSE NA WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:754324:+ chr12:861745-1020618:+ chr12:863490:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1236769:+ chr12:1099675-1605099:+ chr12:1345935:+ chr12:780124,chr12:780121 chr12:1216383,chr12:1216377 NA NA chr12:889290,chr12:889287 chr12:1325549,chr12:1325543 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(11%)|FIP_domain_(100%),RIM-binding_protein_of_the_cytomatrix_active_zone(23%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|Cast(45%),RBD-FIP(100%) 24 23 21 333 208 ENST00000315939.11 ENST00000543086.7 downstream upstream duplicates(14),mismatches(2) CCCAGCCTAGCCTTGTGGGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCCACAGGAGGAACGGAGCCAGCAGCAGGATGATATCGAAGAGCTGGAGACCAAGGCCGTGGGAATGTCTAACGATGGCCGCTTTCTCAAGTTTGACATCGAAATCGGCAGAGGCTCCTTTAAGACGGTCTACAAAGGTCTGGACACTGAAACCACCGTGGAAGTCGCCTGGTGTGAACTGCAG|GCAAGTGAAAGACCAGAATAAGAAGGTAGCAAATCTGAAGCACAAGGAACAGGTGGAAAAAAAGAAGAGTGCACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCAACGACAGCTCTCAGCAGCTACAG___GACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAGCTGGAAGAAGCACTAAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTAGCACAAGAGGAATCAGC QPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQ|aserpe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 9058 RABEPK::SCAI ENSG00000136933.17::ENSG00000173611.18 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RABEPK ENSG00000136933.17 protein_coding + + chr9:125200542-125234161:+ chr9:125213522:+ chr9:127962821-127996440:+ chr9:127975801:+ SCAI ENSG00000173611.18 protein_coding - + chr9:124942608-125143528:- chr9:125088123:+ chr9:127704887-127905807:- chr9:127850402:+ chr9:125216853,chr9:125216853 chr9:125087538,chr9:125087535 NA NA chr9:127979132,chr9:127979132 chr9:127849817,chr9:127849814 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Galactose_oxidase__central_domain(18%),Kelch_motif(52%)| Kelch_1(44%),Kelch_2(45%),Kelch_3(38%),Kelch_4(19%),Kelch_6(0%)| 8 7 42 412 64 ENST00000373538.8 unknown downstream upstream duplicates(20),mismappers(6),mismatches(4),multimappers(2) GAAAACACCAGTGGGACTTAGATACCTGCAAGGGCCTCTTGCCCCGGTATGAACATGCTAGCTTCATTCCCTCCTGCACACCTGACCGTATCTGGGTATTTGGAGGTGCCAACCAATCAGGAAATCGAAATTGTCTACAAGTCCTGAATCCTG|GGTCTCACTGTCACCCAGGCTGGAGTGCAGTGGCACAATCACAGTTCATGACAGCCTCAAACTCCTGGGCTCAACCAATCCTTCCACCTCACCACCCCATGTAGCTGGAACTACAGATGCACACCACCATGCTGATATGGTTTGGATTTGTGTCACCACCCAAATCTCATGTCGAATTGTAATCCCCAATGTTGGAGGAGGGGC KHQWDLDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNP|gshchpgwsavaqsqfmtasnswaqpilpphhpm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9059 MSI2::TRIM37 ENSG00000153944.12::ENSG00000108395.14 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 921 TRUE 1600 TRUE 628 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59075714:- chr17:57059999-57184282:- chr17:57153075:- chr17:57262405,chr17:57262403 chr17:59078955,chr17:59078957 NA NA chr17:55339766,chr17:55339764 chr17:57156316,chr17:57156318 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|MATH_domain(100%) RRM_1(2%)|MATH(100%) 9 31 16 962 360 ENST00000284073.7 ENST00000393066.7 downstream downstream duplicates(14),mismatches(2) CCAG___AGGCTTCGGTTTCGTCACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|GTCAGAAGACATCTCTAACCCAAGAAACAGAGCTTTTGGAATCCTTACTTCAGGAGGTGGAGCACCAG___TTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAGAGCTCAGAGATCCTTATGATGTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTTACCACTCCTGTTCCACCAGACTTTACCAG___TGAATTAGTGCCATCTTACGATTCAGCTACTTTTGTTTTAGAGAATTTCAG___CACTTTGCGTCAGAGAGCAGATCCTGTTTACAGTCCACCTCTTCAAGTTTCAGGACTTTGCTGGAGGTTAAAAGTTTACC RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK|vrrhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9061 MSI2::TRIM37 ENSG00000153944.12::ENSG00000108395.14 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1600 TRUE 628 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59070947:- chr17:57059999-57184282:- chr17:57148308:- chr17:57262405,chr17:57262403 chr17:59078955,chr17:59078957 NA NA chr17:55339766,chr17:55339764 chr17:57156316,chr17:57156318 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(50%)|MATH_domain(100%) RRM_1(2%)|MATH(100%) 0 1 5 962 433 ENST00000284073.7 ENST00000393066.7 downstream downstream duplicates(1),mismatches(1) CGAAACGCTCCAG___AGGCTTCGGTTTCGTCACGTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACG___ATTGACCCCAAAGTTGCATTTCCTCGTCGAGCGCAACCCAAG|TTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAGAGCTCAGAGATCCTTATGATGTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTTACCACTCCTGTTCCACCAGACTTTACCAG___TGAATTAGTGCCATCTTACGATTCAGCTACTTTTGTTTTAGAGAATTTCAG___CACTTTGCGTCAGAGAGCAGATCCTGTTTACAGTCCACCTCTTCAAGTTTCAGG KRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK|LRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9062 PSKH1::LINC01572 ENSG00000159792.10::ENSG00000261008.9 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSKH1 ENSG00000159792.10 protein_coding + + chr16:67893254-67929676:+ chr16:67909706:+ chr16:67927157-67963579:+ chr16:67943609:+ LINC01572 ENSG00000261008.9 lncRNA - + chr16:72236281-72665014:- chr16:72404399:+ chr16:72270180-72698913:- chr16:72438298:+ chr16:67917916,chr16:67917916 chr16:72391646,chr16:72391643 NA NA chr16:67951819,chr16:67951819 chr16:72425545,chr16:72425542 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Protein_kinase_domain(86%)| PK_Tyr_Ser-Thr(100%),Pkinase(3%)| 11 14 27 161 63 ENST00000291041.6 unknown downstream upstream duplicates(16),homopolymer(1),mismatches(4) TCTACTACCATCCGGGCACTGACTCCAAGATCATCATCACCGACTTCGGCCTGGCCAGTGCTCGCAAGAAGGGTGATGACTGCTTGATGAAGACCACCTGTGGCACGCCTGAGTACATTGCCCCAGAAGTCCTGGTCCGCAAGCCATACACCAACTCAGTGGACATGTGGGCGCTGGGCGTCATTGCCTACATCCTACTCAGTGGCACCATGCCGTTTGAGGATGACAACCGTACCCGGCTGTACCGGCAGATCCTCAGGGGCAAGTACAGTTACTCTGGGGAG|GATGTTTGCTTTGCTGACAACTTCAAGACCTCTAAGGATGCTTATTCAGACTTACAGGTCAGTTCTGGTAAGCATCCTCTGACTAGTCAACCAAGCAGTTGAATTCTTTACAGCTGTTACTAATGTCACTGGC...___TGTGGCTCCAAGAATGCTGACAACCAAACTCATAATTTCAAGACAGG...ACAATCCACATTTATGCACAAGAAGATTTCAATTGTCTTTTTAGAACCTCACCCTCAAA YYHPGTDSKIIITDFGLASARKKGDDCLMKTTCGTPEYIAPEVLVRKPYTNSVDMWALGVIAYILLSGTMPFEDDNRTRLYRQILRGKYSYSGE|dvcfadnfktskdaysdlqvssgkhpltsqpss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase H1 CAMK PSK P11801 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9064 SLC22A23::ENSG00000228793 ENSG00000137266.15::ENSG00000228793.3 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1601 TRUE 629 SLC22A23 ENSG00000137266.15 protein_coding - - chr6:3268962-3457050:- chr6:3410188:- chr6:3269196-3457284:- chr6:3410422:- ENSG00000228793 ENSG00000228793.3 lncRNA - - chr6:3585101-3720081:- chr6:3589951:- chr6:3585335-3720315:- chr6:3590185:- chr6:3325342,chr6:3325346 chr6:3590341,chr6:3590342 NA NA chr6:3325576,chr6:3325580 chr6:3590575,chr6:3590576 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Sugar_(and_other)_transporter(17%)| MFS_1(4%),Sugar_tr(3%)| 9 4 22 287 26 ENST00000406686.8 ENST00000658658.1 upstream downstream duplicates(10),mismatches(4) TACGGCATCCGCGCCGGCCTCGTCCAGAACGTGGTCAGCAAG___TGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGTTCTCCTTACTGGTTGGATTAATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTG___GGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCATCATCTTCATTCTGATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCTTTAC|CCTCCTGTGGAGCCGGCCGTGGAAACGCCCTGACATGGAGTCAGAAGCCCGAGCCCGTGTTTCAGACTTGGCGTTCATTGACCAGAAGAGCTGCTTCACCACTTAACCATGCAGCTTCAAGGGCTCCATCTGCAAAACGCAGGCTTGAACCACAGGACTGGTTATGCTCCTTCTTGTTCTGTGTCCTCTAAATCCACCCCGTGGGATGGTTCTCATCCTCATTTCTAGGAAAACAAGGCCCAGGTGGAATCTCTTTTCTCATCTGCAGG YGIRAGLVQNVVSKWDLVCDNAWKVHIAKFSLLVGLIFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYAL|pscgagrgnaltwsqkpepvfqtwrsltrraasplnhaasrapsakrrlepqdwlcsflfcvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9065 SLC22A23::ENSG00000228793 ENSG00000137266.15::ENSG00000228793.3 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1601 TRUE 629 SLC22A23 ENSG00000137266.15 protein_coding - - chr6:3268962-3457050:- chr6:3410188:- chr6:3269196-3457284:- chr6:3410422:- ENSG00000228793 ENSG00000228793.3 lncRNA - - chr6:3585101-3720081:- chr6:3586030:- chr6:3585335-3720315:- chr6:3586264:- chr6:3325342,chr6:3325346 chr6:3590341,chr6:3590342 NA NA chr6:3325576,chr6:3325580 chr6:3590575,chr6:3590576 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Sugar_(and_other)_transporter(17%)| MFS_1(4%),Sugar_tr(3%)| 3 4 3 287 33 ENST00000406686.8 ENST00000665760.1 upstream downstream duplicates(5),mismatches(3) ATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTG___GGTCGGCCGGCGGCCTGTGCTGCTGTTTTCCATCATCTTCATTCTGATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTGACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCTTTAC|GAGCATTCTAGCTAAGAAATGAAGGAGGCGTGACAGAAAATAACCATTTTGCAGCTCCTTGTGGACTAATGAATAGATGCATTGAGCAATAACAATTGCTACTATGAGAGAGAGAGAAAGAGAGAGAGAGAGCGCACGCCAGATATTATATATCCTGATGGAAGAATACAGCACCACCTGTGAAATATTTCCCACTCCTCATTCTCTGCTGGAAAAAAGGACCTGAaTCTGAACAGGCC...GGGACATGGGAAGCCACCATGGGGATGCCATCAGCACTCTGGTCAGGGGAGATGCTACAGGACAGCAATGTGGCTTCCACCAGAAATAAAATGCAAGAAGG IFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILTLYAL|raf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9069 TANC2::EFCAB3 ENSG00000170921.16::ENSG00000172421.10 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1603 TRUE 630 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099357:+ chr17:61043596-61505064:+ chr17:61176718:+ EFCAB3 ENSG00000172421.10 protein_coding + + chr17:62343941-62416480:+ chr17:62350674:+ chr17:60421302-60493841:+ chr17:60428035:+ chr17:63144358,chr17:63144350,chr17:63144349 chr17:62348233,chr17:62348222,chr17:62348226 NA NA chr17:61221719,chr17:61221711,chr17:61221710 chr17:60425594,chr17:60425583,chr17:60425587 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |EF-hand_domain_pair(100%) |EF-hand_5(100%),EF-hand_8(100%) 5 2 9 72 29 ENST00000689528.1 ENST00000635817.2 downstream upstream duplicates(2),mismappers(1) CGTAAAAACAGGTCAAGTG___ATGGAGGGAGCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGACTCTCGCCAAAGCCGCTCTGGGCAAG___GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCTGTCCCGCCACTTCCAGTGAGTGAAGGTATGCAGCACATTCGGATTATGGAGGGCATGTCTCGCTCTCTTCCATCCTCCCCCTTACTCACACATCAGTCTATCAGTGTTCGGCTCCAGCCTGTGAAGAAGTTAACTG|GAAAAAAAGTCAATGTCAGTAATCTGGAAACTCTTCTAAATAATATAGAAATCGAAGTTGGGAAAGAGGAATATGAGGACCTACTGAACCATCTGCCAGTTGATG___AAAATGAAATGGTTGATGTGAATGTGGTGATGGATGAAGCAAAAGCTTTTACAG___GAGAAAAAGTTAATGTCAGTAATCTGGGGAATGAGCTGAGGAA...AAGCTGCTGAAAACTCTGCCAATTCGCAcTag___TGGAAAGGTATATAAGAATAGATTGCTCAAAGGTGTGAAGGCCCTCAACG___GGCCAAGGGTCAAAACAAA RKNRSSDGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSEGMQHIRIMEGMSRSLPSSPLLTHQSISVRLQPVKKLT|gkkvnvsnletllnnieievgkeeyedllnhlpvdenemvdvnvvmdeakaftgekvnvsnlgnelr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 61278318 FALSE 60451175 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9070 TANC2::EFCAB3 ENSG00000170921.16::ENSG00000172421.10 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1603 TRUE 630 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099246:+ chr17:61043596-61505064:+ chr17:61176607:+ EFCAB3 ENSG00000172421.10 protein_coding + + chr17:62343941-62416480:+ chr17:62350674:+ chr17:60421302-60493841:+ chr17:60428035:+ chr17:63144358,chr17:63144350,chr17:63144349 chr17:62348233,chr17:62348222,chr17:62348226 NA NA chr17:61221719,chr17:61221711,chr17:61221710 chr17:60425594,chr17:60425583,chr17:60425587 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |EF-hand_domain_pair(100%) |EF-hand_5(100%),EF-hand_8(100%) 2 1 5 71 29 ENST00000424789.6 ENST00000635817.2 downstream upstream none GTAAAAACAGGTCAAGTG___ATGGAGGGAGCGAGGAACCACCGGATCGAAGACAGTCAAGTGTAGACTCTCGCCAAAGCCGCTCTGGGCAAG___GTGGCATCTCCACAGAAAGCGACTGTGCTTTTGAGCCAGACTACGCTGTCCCGCCACTTCCAGTGAGTGAAG|GAAAAAAAGTCAATGTCAGTAATCTGGAAACTCTTCTAAATAATATAGAAATCGAAGTTGGGAAAGAGGAATATGAGGACCTACTGAACCATCTGCCAGTTGATG___AAAATGAAATGGTTGATGTGAATGTGGTGATGGATGAAGCAAAAGCTTTTACAG___GAGAAAAAGTTAATGTCAGTAATCTGGGGAATGAGCTGAGGAA KNRSSDGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSE|gkkvnvsnletllnnieievgkeeyedllnhlpvdenemvdvnvvmdeakaftgekvnvsnlgnelr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 61278318 FALSE 60451175 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9123 DDX52::AATF ENSG00000278053.5::ENSG00000275700.6 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 924 FALSE NA FALSE NA DDX52 ENSG00000278053.5 protein_coding - - chr17:37609739-37643446:- chr17:37642110:- chr17:35969787-36003475:- chr17:36002139:- AATF ENSG00000275700.6 protein_coding + + chr17:36948925-37056871:+ chr17:36950214:+ chr17:35306225-35414171:+ chr17:35307514:+ chr17:37640505,chr17:37640513 chr17:36950191,chr17:36950183 NA NA chr17:36000534,chr17:36000542 chr17:35307491,chr17:35307483 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Apoptosis-antagonizing_transcription_factor__C-terminal(100%),Apoptosis_antagonizing_transcription_factor(100%) |AATF-Che1(100%),TRAUB(100%) 173 94 146 1333 1345 ENST00000617633.5 ENST00000680340.1 upstream upstream duplicates(102),low_entropy(1),mismatches(103) CCACGATCTCTTTCGCCGGCTCGGCGCGGGGGCCAAATTCGACACGAGACGCTTCTCGGCAGACGCAGCTCGATTCCAG___ATAGGAAAAAGGAAATATGACTTTGATTCTTCGGAGGTGCTTCAGGGACTGGACTTTTTTGGAAACAAGAAGTCTGTCCCAGGTGTGTGTGGAGCATCACAAACACATCAGAAGCCCCAAAATGGAGAGAAAAAAGAAGAGAGCCTAACTGAAAGGAAGAGGGAGCAGAGCAAGAAAAAAAGGAAGACGATGACTTCAG|CCACTGCTGCCAGGGTGATTGACAGGTTTGATGAAGGGGAAGATGGGGAAGGTGATTTCCTAGTAGTGGGTAGCATTAGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGGTATTGCGGCAAAACCACCTCTAGAAAAGCATGGAATGAAGACCATTGGGAGCAGACTCTGCCAGGATCGTCTG___ATGAGGAAATATCTGATGAGGAAGGGTCTGGAG HDLFRRLGAGAKFDTRRFSADAARFQIGKRKYDFDSSEVLQGLDFFGNKKSVPGVCGASQTHQKPQNGEKKEESLTERKREQSKKKRKTMTS|aTAARVIDRFDEGEDGEGDFLVVGSIRKLASASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-2909 chr17:37033745-37033813:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9124 IL1RAPL2::NRK ENSG00000189108.14::ENSG00000123572.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 925 TRUE 1611 TRUE 631 IL1RAPL2 ENSG00000189108.14 protein_coding + + chrX:104566199-105767829:+ chrX:105195748:+ chrX:103810880-105011822:+ chrX:104440430:+ NRK ENSG00000123572.17 protein_coding + + chrX:105822539-105958610:+ chrX:105924695:+ chrX:105066532-105202602:+ chrX:105168687:+ chrX:105204096,chrX:105204097 chrX:105924007,chrX:105924003 NA NA chrX:104448778,chrX:104448779 chrX:105167999,chrX:105167995 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Immunoglobulin_domain(12%)|CNH_domain(100%) Ig_6(0%)|CNH(100%) 94 86 84 195 551 ENST00000372582.6 ENST00000243300.14 downstream upstream duplicates(57),inconsistently_clipped(1),mismappers(3),mismatches(11) ACTGGTCAGTGGATCTCAAGACATACATGGCTTTGGCAGGTGAACCAGTCCGAGTGAAATGTGCCCTTTTCTACAGTTATATTCGTACCAACTATAGCACGGCCCAGAGCACTGGGCTCAGGCTTATGTGGTACAAAAACAAAGGTGATTTGGAAGAGCCCATCATCTTTTCAGAGGTCAGGATGAGCAAAGAGGAAGATTCAATATGGTTTCACTCAGCTGAGGCACAAGACAGTGGATTCTACACTTGTGTTTTAAG|GGCAAGCTATGGCAGAGATGGAAGCTGCAAGCAAGATGGTTATGATGGAAGTCGTGGAAAAGAGGAAGCCTACAGAGGCTATGGAAGCCATACAGCCAATAGAAGCCATGGAGGAAGTGCAGCCAGTGAGGACAATGCAGCCATTGGAGATCAGGAAGAACATGCAGCCAATATAGGCAGTGAAAGAAGAGGCAGTGAGGGTGATGGAGGTAAGGGAGTCGTTCGAACCAGTGAAGAGAGTGG WSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPIIFSEVRMSKEEDSIWFHSAEAQDSGFYTCVLr|ASYGRDGSCKQDGYDGSRGKEEAYRGYGSHTANRSHGGSAASEDNAAIGDQEEHAANIGSERRGSEGDGGKGVVRTSEES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Nik-related protein kinase STE STE20 MSN Q7Z2Y5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9125 IL1RAPL2::NRK ENSG00000189108.14::ENSG00000123572.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1611 TRUE 631 IL1RAPL2 ENSG00000189108.14 protein_coding + + chrX:104566199-105767829:+ chrX:105195748:+ chrX:103810880-105011822:+ chrX:104440430:+ NRK ENSG00000123572.17 protein_coding + + chrX:105822539-105958610:+ chrX:105934258:+ chrX:105066532-105202602:+ chrX:105178250:+ chrX:105204096,chrX:105204097 chrX:105924007,chrX:105924003 NA NA chrX:104448778,chrX:104448779 chrX:105167999,chrX:105167995 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Immunoglobulin_domain(12%)|CNH_domain(100%) Ig_6(0%)|CNH(100%) 2 2 3 195 462 ENST00000372582.6 ENST00000243300.14 downstream upstream duplicates(2) CCAGTCCGAGTGAAATGTGCCCTTTTCTACAGTTATATTCGTACCAACTATAGCACGGCCCAGAGCACTGGGCTCAGGCTTATGTGGTACAAAAACAAAGGTGATTTGGAAGAGCCCATCATCTTTTCAGAGGTCAGGATGAGCAAAGAGGAAGATTCAATATGGTTTCACTCAGCTGAGGCACAAGACAGTGGATTCTACACTTGTGTTTTAAG|GAGCCAGGTGGTGGAAATGAGGCCTCAAATGCCATTGACTCAGGTGCTGCACCGTCAGCACCTGATCATGAGAGTGACAATAAGGACATATCAGAATCATCAACACAATCAGATTTTTCTGCCAATCACTCATCTCCTTCCAAAGGTTCTGGGATGTCTGCTGATGCTAACTTTGCCAGTGCCATCT___TATACGCTGGATTCGTAGAAGTACCTGAGGAATCACCTAAGCAACCCTCTGAAG...AGTTCACTTCTGAGATCTGCTGTGGTTCTTTGTGGG___GAGTCAATTTGCTGTTGGGAACCCGATCTAATCTATATCTGATGGACAGAAGTGGAAAGGCTGAC PVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPIIFSEVRMSKEEDSIWFHSAEAQDSGFYTCVLr|sqvvemrpqmpltqvlhrqhlimrvtirtyqnhqhnqiflpithllpkvlgcllmltlpvpsytlds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Nik-related protein kinase STE STE20 MSN Q7Z2Y5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9126 IL1RAPL2::NRK ENSG00000189108.14::ENSG00000123572.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1611 TRUE 631 IL1RAPL2 ENSG00000189108.14 protein_coding + + chrX:104566199-105767829:+ chrX:105195748:+ chrX:103810880-105011822:+ chrX:104440430:+ NRK ENSG00000123572.17 protein_coding + + chrX:105822539-105958610:+ chrX:105935170:+ chrX:105066532-105202602:+ chrX:105179162:+ chrX:105204096,chrX:105204097 chrX:105924007,chrX:105924003 NA NA chrX:104448778,chrX:104448779 chrX:105167999,chrX:105167995 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Immunoglobulin_domain(12%)|CNH_domain(100%) Ig_6(0%)|CNH(100%) 1 0 1 195 449 ENST00000372582.6 ENST00000243300.14 downstream upstream none GGAAAACAAGCTCAGGTCCCACTGATTCTACATTATG___TGGATGGCTGCATTGACTGGTCAGTGGATCTCAAGACATACATGGCTTTGGCAGGTGAACCAGT...AGTGGATTCTACACTTGTGTTTTAAG|TATACGCTGGATTCGTAGAAGTACCTGAGGAATCACCTAAGCAACCCTCTGAAGTCAATGTTAACCCACTCTATG...GGAGTTCACTTCTGAGATCTGCTGTGGTTCTTTGTGGG___GAGTCAATTTGCTGTTGGGAACCCGATCTAATCTATATCTGATGGACAGAAGTGGAAAGGCTG SGFYTCVLs|irwirrst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Nik-related protein kinase STE STE20 MSN Q7Z2Y5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9127 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 926 TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77236947:+ chr7:76751751-76958850:+ chr7:76866264:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none |GSAP-16(100%) 39 96 35 257 213 ENST00000248594.11 ENST00000285871.5 downstream upstream duplicates(29),mismatches(3) GCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATG|TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG___CACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGGAGGTCTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATATAATGCAGTGAAGGAAAGAG MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFM|LHAMGKLPGTRMAALKAKYTLLHDAVMSTQESEVQLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9128 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 927 TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77241691:+ chr7:76751751-76958850:+ chr7:76871008:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |GSAP-16(100%) 7 19 19 257 281 ENST00000248594.11 ENST00000285871.5 downstream upstream duplicates(9) AGCCGGGGGGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATG|CACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGGAGGTCTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATATAATGCAGTGAAGGAAAGAGAGTTCCATAATCAGTACAGATTAAATAG___CTTAAAGGAAGAAAAAAT MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFM|htrvrgptatecqtfh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9129 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77254506:+ chr7:76751751-76958850:+ chr7:76883823:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |GSAP-16(100%) 0 12 10 257 356 ENST00000248594.11 ENST00000285871.5 downstream upstream duplicates(4) GCGACCGCAGCCGGGGGGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATG|CTTAAAGGAAGAAAAAATCATCATAGTAAAAGAATTTGAGAAGATAACAAAGCCAGGA___GAAATGGAGAAGAAGATGAAAATATTGAGAGAAAGCACTGAAGAATTACGTAAAGAAATAATGCAGAAG MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFM|lkgrknhhskri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9130 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77538106:+ chr7:77166612-77269386:+ chr7:77167423:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77236947:+ chr7:76751751-76958850:+ chr7:76866264:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none |GSAP-16(100%) 1 0 35 9 213 ENST00000415482.6 ENST00000285871.5 downstream upstream duplicates(13) GTCGAGGCAAGGTATCTGGCTGTGACCGGGAGGAGTGCAGATCGTGGCTGACAGAGGAACGGGGGTATTGAG|TTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAG___CACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9131 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77273694:+ chr7:76751751-76958850:+ chr7:76903011:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none |GSAP-16(100%) 0 1 1 257 295 ENST00000248594.11 ENST00000285871.5 downstream upstream none GGCCAGCGACCGCAGCCGGGGGGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATG|ATGGAAGCTATCCCCAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAGCTTCACAAG...AGTTGAAGTAGCTAAGAGGAATTTGGCCCAACAG___AAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAA...GTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAG___CAAAAATACACCAACATTGT MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFM|MEAIPKDDSTLSERRRELH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9132 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77274482:+ chr7:76751751-76958850:+ chr7:76903799:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none |GSAP-16(100%) 0 1 0 257 437 ENST00000248594.11 ENST00000285871.5 downstream upstream duplicates(1) CCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATG|AAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAG PDHNGEDNFARDFM|KIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9134 EZH2::CUL1 ENSG00000106462.12::ENSG00000055130.18 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148828740:- chr7:148504349-148581413:- chr7:148525832:- CUL1 ENSG00000055130.18 protein_coding + - chr7:148697914-148801110:+ chr7:148783422:- chr7:148395006-148498202:+ chr7:148480514:- chr7:148828412,chr7:148828412,chr7:148828414 chr7:148785338,chr7:148785335,chr7:148785341 NA NA chr7:148525504,chr7:148525504,chr7:148525506 chr7:148482430,chr7:148482427,chr7:148482433 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Polycomb_repressive_complex_2_tri-helical_domain(55%),WD_repeat_binding_protein_EZH2(100%)| EZH2_WD-Binding(100%),PRC2_HTH_1(32%)| 31 30 32 869 125 ENST00000683292.1 unknown upstream downstream duplicates(13),mismappers(1),mismatches(5) GGGAAAGTACACGGGGATAGAG___AATGTGGGTTTATAAATGATGAAATTTTTGTGGAGTTGGTGAATGCCCTTGGTCAATATAATGATGATGACGATGATGATGATGGAGACGATCCTGAAGAAAGAGAAGAAAAGCAGAAAGATCTGGAGGATCACCGAGATG|CTGGAGAAGGCGTTTAGCCGCCGAGGTCGGTCATCAGCCCGGCTGGGCAGGCAACGCGAGGGAAAGCGGGGCTCAGGGCGGGAGTCTGACTGCGGCCCCCACCCACTGCAAACCAGAGGCGCGGATCCGCGTGGCGATGCCGGGGGCCAGGGCCTCATCGCAGGACGGGAAGAGGGGCGGAGCGCGGCGCAGGGCAGCAAAGGGGCCTCCCCGGAACAAGGAACAACATGGAAATGCAACGGGAAGGCTGGCCGCAGAGGCTCCTGTGG GKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRD|agegv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 9135 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 929 TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72069842:- chr11:71713910-71791739:- chr11:71780888:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |CHAT_domain(100%) |CHAT(100%) 28 28 34 618 120 ENST00000613205.4 ENST00000397906.7 upstream downstream duplicates(19),mismappers(6),mismatches(1) CGAGCCCACGAAGAGGTACGATTCCGGAGAATCGCGAGGCAGAGCGGGAGCGCGCAGCCAG___GTGGAAACTAATTCTAAGCCAGACTGCTGGAGATCACCCTGTTCTAGTGTGTGGAGGCTTCCACCAGGAG|GCCATCATGATGAAGCCCTGGCTGTGGCAGAAAGGGGACGGACAAGGGCATTTGCTGATCTTCTGGTGGAACGACAAACAGGACAACAAGACTCCGACCCCTACTCCCCAGTCACTATTGATCAGATCTTAGAGATGGTAAATGGCCAGAGGGGACTAGTGCTTTACTATTCCCTGGCTGCAGGCTATCTGTATAGCTGGCTGCTGGCTCCTGGGGCAG___GAATTGTGAAGTTTCATGAACACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9136 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72068105:- chr11:71713910-71791739:- chr11:71779151:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |CHAT_domain(100%) |CHAT(100%) 4 3 35 80 120 ENST00000543450.1 ENST00000397906.7 upstream downstream duplicates(10),mismatches(1) CACGAAGAGGTACGATTCCGGAGAATCGCGAGGCAGAGCGGGAGCGCGCAGCCAG___GTGGAAACTAATTCTAAGCCAGACTGCTGGAGATCACCCTGTTCTAGTGTGTGGAGGCTTCCACCAGGAG___GAAACTGCAGCTGAGGAGCCATTGCAGTCCCATCTCCAGAAGACCCCCAGAAAGAGTTGGAAGAGTTCTTCAGGCTGTGGCAGCCACTGCCCACCAACACACCCAAATCAATCAAGATGAATCCCAG|GCCATCATGATGAAGCCCTGGCTGTGGCAGAAAGGGGACGGACAAGGGCATTTGCTGATCTTCTGGTGGAACGACAAACAGGACAACAAGACTCCGACCCCTACTCCCCAGTCACTATTGATCAGATCTTAGAGATGGTAAATGGCCAGAGGGGACTAGTGCTTTACTATTCCCTGGCTGCAGGCTATCTGTATAGCTGGCTGCTGGCTCCTGGGGCAG___GAATTGTGAAGTTTCATGAACACTACCTGGGTGAGAACACAGTGGAAAACTCAAGTGACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9137 TTC28::NUMA1 ENSG00000100154.15::ENSG00000137497.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1614 TRUE 634 TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28101171:- chr22:28374002-29075828:- chr22:28497159:- NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72035975:- chr11:71713910-71791739:- chr11:71747021:- chr22:28097410,chr22:28097415 chr11:72049549,chr11:72049548 NA NA chr22:28493398,chr22:28493403 chr11:71760595,chr11:71760594 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Tetratricopeptide_repeat(98%)| ANAPC5(100%),TPR_1(100%),TPR_10(100%),TPR_12(99%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%)| 3 1 4 50 713 ENST00000397906.7 ENST00000613205.4 upstream downstream duplicates(1) CAGCACTTGAGCATTGCTGCACAGATGAATGACTTGGCGGCCAAGACGGTGTCATATAGTAGCCTTGGAAGGACCCATCATGCCTTGCAGAACTATTCCCAAGCAGTCATGTACTTACAGGAAG___GTTTAAGGTTAGCTGAGCAACTGGGCCGAAGAGAAGATGAGGCAAAAATTCGCCATGGCCTTGGCCTCTCCCTTTGGGCTAGTGGAAACTTGGAGGAGGCCCAACACCAG|GCGCATTGGAGTGACTGTCTGGCATCACCAAGATGACACTCCACGCCACCCGGGGGGCTGCACTCCTCTCTTGG___GTGAACAGTCTACACGTGGCTGACCCTGTGGAGGCTGTGCTGCAGCTCCAGGACTGCAGCATCTTCATCAAG QHLSIAAQMNDLAAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQ|ahwsdclaspr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation 9138 TTC28::NUMA1 ENSG00000100154.15::ENSG00000137497.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1614 TRUE 634 TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28098915:- chr22:28374002-29075828:- chr22:28494903:- NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72035975:- chr11:71713910-71791739:- chr11:71747021:- chr22:28097410,chr22:28097415 chr11:72049549,chr11:72049548 NA NA chr22:28493398,chr22:28493403 chr11:71760595,chr11:71760594 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Tetratricopeptide_repeat(100%)| ANAPC5(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%)| 3 0 4 33 713 ENST00000397906.7 ENST00000613205.4 upstream downstream duplicates(1) CAGCACTTGAGCATTGCTGCACAGATGAATGACTTGGCGGCCAAGACGGTGTCATATAGTAGCCTTGGAAGGACCCATCATGCCTTGCAGAACTATTCCCAtGCAGTCATGTACTTACAG...CTCTCCCTCTTTGACCTGCAGACATCATCCTACCAGGCCTTGCAGCGGGTGCTCGTCAGCCTAG|GCGCATTGGAGTGACTGTCTGGCATCACCAAGATGACACTCCACGCCACCCGGGGGGCTGCACTCCTCTCTTGG___GTGAACAGTCTACACGTGGCTGACCCTGTGGAGGCTGTGCTGCAGCTCCAGGACTGCAGCATCTTCATCAAG LSLFDLQTSSYQALQRVLVSL|gale* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation 9139 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72050662:- chr11:71713910-71791739:- chr11:71761708:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |CHAT_domain(100%) |CHAT(100%) 1 0 37 8 120 ENST00000541641.5 ENST00000397906.7 upstream downstream duplicates(9),mismappers(1),mismatches(1) CGCGAGGCAGAGCGGGAGCGCGCAGCCAG___AAGCAGTGTGAACAATGAATGCAGAAATGCTTTGTATACATGAAGACCTATACTGATGAGAAAGATAGAGGATGTAGCTGAGATGTGCTGGAGAGAGCACTGGATTTAGAAGACATCTCTTTGAGTTCTGGtTCTGCAGCCTTACCAGTCGACCTTGAGGCAG|GCCATCATGATGAAGCCCTGGCTGTGGCAGAAAGGGGACGGACAAGGGCATTTGCTGATCTTCTGGTGGAACGACAAACAGGACAACAAGACTCCGACCCCTACTCCCCAGTCACTATTGATCAGATCTTAGAGATGGTAAATGGCCAGAGGGGACTAGTGCTTTACTATTCCCTGGCTGCAGGCTATCTGTATAGCTGGCTGCTGGCTCCTGGGGCAG___GAATTGTGAAGTTTCATGAACACTACCTGGGTGAGAACACAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9140 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72050664:- chr11:71713910-71791739:- chr11:71761710:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096406:- chr22:28374002-29075828:- chr22:28492394:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |CHAT_domain(100%) |CHAT(100%) 0 1 28 8 120 ENST00000541641.5 ENST00000397906.7 upstream downstream duplicates(6),mismatches(1) CGCGAGGCAGAGCGGGAGCGCGCAGCCAG___AAGCAGTGTGAACAATGAATGCAGAAATGCTTTGTATACATGAAGACCTATACTGATGAGAAAGATAGAGGA...AAGACATCTCTTTGAGTTCTGGCTCTGCAGCCTTACCAGTCGACCTTGAGGC|CATCATGATGAAGCCCTGGCTGTGGCAGAAAGGGGACGGACAAGGGCATTTGCTGATCTTCTGGTGGAACGACAAACAGGACAACAAGACTCCGACCCCTACTCCCCAGTCACTATTGATCAGATCTTAGAGATGGTAAATGGCCAGAGGGGACTAGTGCTTTACTATTCCCTGGCTGCAGGCTATCTGTATAGCTGGCTGCTGGCTCCTGGGGCAG___GAATTGTGAAGTTTCATGAACACTACCTGGGTGAGAACACAGTGGAAAACTCAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9141 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72080458:- chr11:71713910-71791739:- chr11:71791504:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |CHAT_domain(100%) |CHAT(100%) 0 4 0 368 120 ENST00000613205.4 ENST00000397906.7 upstream downstream none GCGCGAGCCCACGAAGAGGTACGATTCCGGAGAATCGCGAGGCAGAGCGGGAGCGCGCAGCCAG|GCCATCATGATGAAGCCCTGGCTGTGGCAGAAAGGGGACGGACAAG...CCCCAGTCACTATTGATCAGATCTTAGAGATGGTAAATGGCCAGAGGGGACTAGTGCTTTACTATTCCCTGGCTGCAGGCTATCTGTATAGCTGGCTGCTGGCTCCTGG...GGTCACTGACCCCACTGGCTTTCTGCGGATGGTTCGCCGCAAcAACCTGTTTAcCAG___GAGCTGCCAGAGCATGACGAGCCTGTTCAGTAACACTGTGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9142 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1613 TRUE 633 NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72068079:- chr11:71713910-71791739:- chr11:71779125:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |CHAT_domain(100%) |CHAT(100%) 0 0 0 13 120 ENST00000535111.5 ENST00000397906.7 upstream downstream mismatches(1) GGCTGAAGCAGATGGTTTG|GCCATCATGATGAAGCCCTGGCTGTGGaAGAAAGGGGcCGGACAAGGGCATTTGCTGATCTTCTGGTGGAcCGACAAACAGG...TGTGTTGGGGGAGGGGGACTTGCCCAGGCTGCTGTCTGCACCATcAATTAACTTCACTCTTTAAGCTGAGTGTGGATGGGAAGCCAGGGAGCAGCTGCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9146 VPS13B::GUCY1A2 ENSG00000132549.20::ENSG00000152402.11 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99013935:+ chr8:100025494-100889808:+ chr8:100026163:+ GUCY1A2 ENSG00000152402.11 protein_coding - + chr11:106674019-107018476:- chr11:106768170:+ chr11:106544745-106889202:- chr11:106638896:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none N-terminal_region_of_Chorein_or_VPS13(47%)| Chorein_N(0%)| 22 20 12 91 38 ENST00000357162.7 unknown downstream upstream duplicates(5),mismatches(1) TGGAGGTGGAGGGGACGCGGCGGTACTCTGGCGT___CTTCCGACTTCGACTCCTTACCTTAAAAGATGCTGGAGTCATATGTAACTCCAATTTTAATGAGCTATGTGAATCGCTACATCAAGAACTTAAAGCCGTCGGATCTACAGCTTTCACTATGGGGTGGAGACGTGGTACTCAGCAAGCTCGAGTTAAAGTTGGATGTGCTGGAACAG|ATAAGGTATTGTTATGCTGTCCAGCACAGGCTGGTGTCTAACTCCTGGATTAAAGCCATCCTCCCTCCTCAGCTTCTCGAGTATCTGGGACTACAG___CACTTCCACATCTTTCTGCTTTAACGTTCAGCACAAGCTATAATCAATATGTATCTATATAAAGTCAATACATATCCCTG MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQ|irycyavqhrlvsnswikailppqlleylglqhfhifll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9147 ANTXR1::LRRTM4 ENSG00000169604.21::ENSG00000176204.14 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1616 TRUE 635 ANTXR1 ENSG00000169604.21 protein_coding + + chr2:69013176-69249327:+ chr2:69090919:+ chr2:69240308-69476459:+ chr2:69318051:+ LRRTM4 ENSG00000176204.14 protein_coding - - chr2:76747685-77593319:- chr2:77013501:- chr2:76974811-77820445:- chr2:77240627:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Anthrax_receptor_extracellular_domain(16%),von_Willebrand_factor_type_A_domain(100%)| Anth_Ig(0%),VWA(100%),VWA_2(100%)| 19 8 23 70 19 ENST00000303714.9 unknown downstream downstream duplicates(5),mismatches(3),multimappers(1) CCCGGATTGCGGACAGTAAGGATCATGTGTTTCCCGTGAATGACGGCTTTCAGGCTCTGCAAGGCATCATCCACTCA___ATTTTGAAGAAGTCCTGCATCGAAATTCTAGCAGCTGAACCATCCACCATATGTGCAGGAG|TGTTTCAGACTCTCTCAGGCTTGGCTGCAACTTCCATTTGACTACCAGTTTTCCATCCAATGCTCATTACAAGGCGATTTTCCCTCACAGTGGTAATCTCAGGGGTAAAGTTGCTCCACAGTAATATCCATTCTCTATTGCCTGCGAGCTGAGGGAGAATGACAATCACTTTCTCCGTCCCTGCCTTTGCCAAAACATATCACAGCACCACATCTGCTCTATGCAGCCAACTGACAGCAGCAGAAAAACAAACTGGAATCAAGG RIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAG|vfqtlsglaatsi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9148 ANTXR1::LRRTM4 ENSG00000169604.21::ENSG00000176204.14 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1616 TRUE 635 ANTXR1 ENSG00000169604.21 protein_coding + + chr2:69013176-69249327:+ chr2:69090919:+ chr2:69240308-69476459:+ chr2:69318051:+ LRRTM4 ENSG00000176204.14 protein_coding - - chr2:76747685-77593319:- chr2:76748916:- chr2:76974811-77820445:- chr2:76976042:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Anthrax_receptor_extracellular_domain(16%),von_Willebrand_factor_type_A_domain(100%)| Anth_Ig(0%),VWA(100%),VWA_2(100%)| 2 2 3 70 15 ENST00000303714.9 ENST00000409884.6 downstream downstream mismatches(2) CAGAGAGGGAG___GCTAATAGGTCTCGAGATCTTGGTGCAATTGTTTACTGTGTTGGTGTGAAAGATTTCAATGAGACACAG___CTGGCCCGGATTGCGGACAGTAAGGATCATGTGTTTCCCGTGAATGACGGCTTTCAGGCTCTGCAAGGCATCATCCACTCA___ATTTTGAAGAAGTCCTGCATCGAAATTCTAGCAGCTGAACCATCCACCATATGTGCAGGAG|ATGCCACACCACATGAAGCCCTTGCCATATTACAGCTATGACCAGCCTGTGATCGGGTACTGCCAGGCCC?CCAGCCACTCCATGTCACCAAGGGCTATGAGACAGTGTCTCCAGAGCAGGACGAgAG...GCCTGGAGCTGGGCCGAGACCACAGCTTCATCGCCACCATCGCCAGGTCGGCAGCACCGGCCATCTACCTAGAGAGAATTGCAAACTAACGCTGAAGCCAACTCCTC EREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAG|datphealailql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9149 AHR::MACC1 ENSG00000106546.14::ENSG00000183742.13 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHR ENSG00000106546.14 protein_coding + + chr7:16916359-17346152:+ chr7:17310123:+ chr7:16955983-17385776:+ chr7:17349747:+ MACC1 ENSG00000183742.13 protein_coding - + chr7:20134655-20217404:- chr7:20167654:+ chr7:20174278-20257027:- chr7:20207277:+ chr7:17310653 chr7:20167080 NA NA chr7:17350277 chr7:20206703 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Helix-loop-helix_DNA-binding_domain(100%)| HLH(100%)| 8 16 14 85 43 ENST00000242057.9 unknown downstream upstream duplicates(5),mismatches(2) GCGCCAACATCACCTACGCCAGTCGCAAGCGGCGGAAGCCGGTGCAGAAAAC___AGTAAAGCCAATCCCAGCTGAAGGAATCAAGTCAAATCCTTCCAAGCGGCATAGAGACCGACTTAATACAGAGTTGGACCGTTTGGCTAGCCTGCTGCCTTTCCCACAAGATGTTATTAATAAGTTGGACAAACTTTCAGTTCTTAGGCTCAGCGTCAGTTACCTGAGAGCCAAGAGCTTCTTTGATG|GTTAAAACTTCTCTTCCAGAGGAAGCGAAATTTGAGACTACACCCTGACCCTGTTGCTGGAGAGTAGTATCAAGCCACAGTGTTGACCCCGGAAGATCTCCAAGTTCACAGCAGGACCTGCATCATGGGCATGTGACCTGTGCAATAACACAGAGCCCCACTCTTGGATAGGCCCCATGCTTGGTGTAATGCTCTGCCACTGCCATCTTGAAATACCTAATATGTTTTGAACAAGAGGTCCC ANITYASRKRRKPVQKTVKPIPAEGIKSNPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAKSFFD|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9150 ENSG00000283321::MACC1 ENSG00000283321.1::ENSG00000183742.13 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283321 ENSG00000283321.1 protein_coding + + chr7:17299295-17467234:+ chr7:17310123:+ chr7:17338919-17506858:+ chr7:17349747:+ MACC1 ENSG00000183742.13 protein_coding - + chr7:20134655-20217404:- chr7:20167654:+ chr7:20174278-20257027:- chr7:20207277:+ chr7:17310653 chr7:20167080 NA NA chr7:17350277 chr7:20206703 NA NA sense antisense unknown CDS/splice-site intron deletion/5'-5' high none Helix-loop-helix_DNA-binding_domain(100%)| HLH(100%)| 8 16 12 85 43 ENST00000637807.1 unknown downstream upstream duplicates(5),mismatches(1) GCGCCAACATCACCTACGCCAGTCGCAAGCGGCGGAAGCCGGTGCAGAAAAC___AGTAAAGCCAATCCCAGCTGAAGGAATCAAGTCAAATCCTTCCAAGCGGCATAGAGACCGACTTAATACAGAGTTGGACCGTTTGGCTAGCCTGCTGCCTTTCCCACAAGATGTTATTAATAAGTTGGACAAACTTTCAGTTCTTAGGCTCAGCGTCAGTTACCTGAGAGCCAAGAGCTTCTTTGATG|GTTAAAACTTCTCTTCCAGAGGAAGCGAAATTTGAGACTACACCCTGACCCTGTTGCTGGAGAGTAGTATCAAGCCACAGTGTTGACCCCGGAAGATCTCCAAGTTCACAGCAGGACCTGCATCATGGGCATGTGACCTGTGCAATAACACAGAGCCCCACTCTTGGATAGGCCCCATGCTTGGTGTAATGCTCTGCCACTGCCATCTTGAAATACCTAATATGTTTTGAACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9151 ATXN2::UNC5C ENSG00000204842.18::ENSG00000182168.16 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1617 TRUE 636 ATXN2 ENSG00000204842.18 protein_coding - - chr12:111443485-111599676:- chr12:111552280:- chr12:111881289-112037480:- chr12:111990084:- UNC5C ENSG00000182168.16 protein_coding - - chr4:95162504-95549206:- chr4:95412989:- chr4:96083655-96470357:- chr4:96334140:- chr12:111543502,chr12:111543509 chr4:95419725,chr4:95419729 NA NA chr12:111981306,chr12:111981313 chr4:96340876,chr4:96340880 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Ataxin_2_SM_domain(100%)|Death_domain(100%),Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(100%),ZU5_domain(100%) SM-ATX(100%)|Death(100%),I-set(100%),Ig_3(100%),TSP_1(100%),UPA(100%),ZU5(100%),ig(100%) 11 4 18 399 30 ENST00000642389.2 unknown upstream downstream duplicates(4),mismatches(1),multimappers(1) GTGAAGTACAAGTGAAAAATGGAGGTATATATGAAGGAGTTTTTAAAACTTACAGTCCGAAG___TGTGATTTGGTACTTGATGCCGCACATGAGAAAAGTACAGAATCCAGTTCGGGGCCGAAACGTGAAGAAATAATGGAGAGTATTTTGTTCAAATGTTCAGACTTTGTTGTGGTACAGTTTAAAGATATGGACTCCAGTTATGCAAAAAGAG|AAGTGAAGGAAGTCGAGAGAGAATCCTGGGTATGTAGATGGAAAGTA...___GTAGCTTTCAATGGCTGGAAAACGATCCATCTGTGAGCCACACTGGCCTCTTCGGAAATACCCTCCTATTGA EVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKR|evkevereswvcrwk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9152 ATXN2::UNC5C ENSG00000204842.18::ENSG00000182168.16 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 930 TRUE 1617 TRUE 636 ATXN2 ENSG00000204842.18 protein_coding - - chr12:111443485-111599676:- chr12:111552280:- chr12:111881289-112037480:- chr12:111990084:- UNC5C ENSG00000182168.16 protein_coding - - chr4:95162504-95549206:- chr4:95335631:- chr4:96083655-96470357:- chr4:96256782:- chr12:111543502,chr12:111543509 chr4:95419725,chr4:95419729 NA NA chr12:111981306,chr12:111981313 chr4:96340876,chr4:96340880 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ataxin_2_SM_domain(100%)|Death_domain(100%),Immunoglobulin_I-set_domain(100%),Thrombospondin_type_1_domain(100%),UPA_domain(100%),ZU5_domain(100%) SM-ATX(100%)|Death(100%),I-set(100%),Ig_3(100%),TSP_1(100%),UPA(100%),ZU5(100%),ig(100%) 16 5 6 399 24 ENST00000642389.2 ENST00000453304.6 upstream downstream duplicates(6),mismatches(1) CTTGATGCCGCACATGAGAAAAGTACAGAATCCAGTTCGGGGCCGAAACGTGAAGAAATAATGGAGAGTATTTTGTTCAAATGTTCAGACTTTGTTGTGGTACAGTTTAAAGATATGGACTCCAGTTATGCAAAAAGAG|ATGATGACTTTTTTCATGAACTCCCAGAAACTTTTCCTTCTGATCCACCTGAGCCTCTGCCACATTTCCTTATTGAGCCTGAAGAAGCTTATATTGTGAAGAATAAGCCtGTGAACCTGTACTGTAAAGCAAGCCCTGCCACCCAGATCTATTTCAAGTGTAATAGcGAATGGGTTCA LDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKR|dDDFFHELPETFPSDPPEPLPHFLIEPEEAYIVKNKPVNLYCKASPATQIYFKCNSEWV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9153 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63487447:- chr2:63346694-64054977:- chr2:63714581:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44061132:+ chr1:44496086-44581585:+ chr1:44526804:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none Ldh_1_C(100%),Ldh_1_N(100%)| 9 7 10 84 30 ENST00000272321.12 ENST00000453688.5 upstream upstream duplicates(4),mismatches(1) GGAACCTTCTGCCCGGGGTAGTGTCTGGTGATGAGGCGAGAGTTTTGCTGGGACGCCTACTCCAAAGCGGCCGGGAGTCGCGCTTCTTCCCCACTCCCGAGACAG___GATAGAGATTCCTTCTGCCATCAGATGTCTTTCTGCTTGACTGAACTGCACCTGTGGTCTTTGAAGAATACCTTACACATTGCGG___ATAGAGACATTGGGATCTACCAGTATTATGACAAGAAAGATCCACCAG|TTCCAGGTAAAGACAATCCTTGCACAAGGCTTCCAACTCGACCCGCCTACTGACCTGGAGAATGAAAGTGTCCTGCCTCGGGGCCCCTCAGATCAG___CACCCAAACTGCACCTGGTCACCTGTCTACATTCAGATTTAGATGAAAGCCACACCATGGAGGCAGCCAGAGGCCCATGGGAGATGTCTGGATTCGCAGAGGAATAGCTCCATGTGATGCAA?CCTTGACTAATGGGAACAGG MRREFCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIYQYYDKKDPP|vpgkdnpctrlptrpay* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9154 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63487447:- chr2:63346694-64054977:- chr2:63714581:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44076091:+ chr1:44496086-44581585:+ chr1:44541763:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none Ldh_1_C(100%),Ldh_1_N(100%)| 1 0 6 84 33 ENST00000272321.12 ENST00000431800.2 upstream upstream duplicates(3),mismatches(1) CTACTCCAAAGCGGCCGGGAGTCGCGCTTCTTCCCCACTCCCGAGACAG___GATAGAGATTCCTTCTGCCATCAGATGTCTTTCTGCTTGACTGAACTGCACCTGTGGTCTTTGAAGAATACCTTACACATTGCGG___ATAGAGACATTGGGATCTACCAGTATTATGACAAGAAAGATCCACCAG|CACCCAAACTGCACCTGGTCACCTGTCTACATTCAGATTTAGATGAAAGCCACACCATGGAGGCAGCCAGAGGCCCATGGGAGATGTCTGGATTCGCAGAGGAATAGCTCCATGTGATGCAAACCTTGACTAATGGGAACAGGAAAAGGGAGGAAACCAGGAAGATAAATCTCCCTCCCTTCTCATTGCTCCTTGCAACCCTTCCCACTTGAAGCATG YSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIADRDIGIYQYYDKKDPP|apklhlvtclhsdldeshtmeaargpwemsgfaee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9155 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63492856:- chr2:63346694-64054977:- chr2:63719990:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44074838:+ chr1:44496086-44581585:+ chr1:44540510:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none Ldh_1_C(100%),Ldh_1_N(100%)| 0 1 3 96 4 ENST00000272321.12 ENST00000437643.1 upstream upstream mismatches(1) TTTTGCTGGGACGCCTACTCCAAAGCGGCCGGGAGTCGCGCTTCTTCCCCACTCCCGAGACAG___GATAGAGATTCCTTCTGCCATCAGATGTCTTTCTGCTTGACTGAACTGCACCTGTGGTCTTTGAAGAATACCTTACACATTGCGG|GAAACCCTGGAACAGTGTCTATAAGTCATGAAAAACAGAGCAATTGAAATGGAATCTCACTTGGGACCCCAGTCACTGCTCCAGACTGAC FCWDAYSKAAGSRASSPLPRQDRDSFCHQMSFCLTELHLWSLKNTLHIA|gnpgtvsishekqsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9156 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63487447:- chr2:63346694-64054977:- chr2:63714581:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44101560:+ chr1:44496086-44581585:+ chr1:44567232:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none Ldh_1_C(100%),Ldh_1_N(100%)| 1 0 0 84 10 ENST00000272321.12 ENST00000434244.5 upstream upstream mismatches(1) CGAGACAG___GATAGAGATTCCTTCTGCCATCAGATGTCTTTCTGCTTGACTGAACTGCACCTGTGGTCTTTGAAGAATACCTTACACATTGCGG___ATAGAGAC...GTATTATGACAAGAAAGATCCACCAG|GAATACCAGATAAATGACGTTGTGCCCTTCTCAATGATCACGTCAGGAGACACATGGTATCTATTTGTCTTTTTA YYDKKDPP|gipdk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9158 CMTM4::TERB1 ENSG00000183723.13::ENSG00000249961.10 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 932 TRUE 1619 TRUE 638 CMTM4 ENSG00000183723.13 protein_coding - - chr16:66614750-66696743:- chr16:66696340:- chr16:66648653-66730646:- chr16:66730243:- TERB1 ENSG00000249961.10 protein_coding - - chr16:66754640-66801620:- chr16:66791019:- chr16:66788543-66835523:- chr16:66824922:- chr16:66657355,chr16:66657359 chr16:66791722,chr16:66791723 NA NA chr16:66691258,chr16:66691262 chr16:66825625,chr16:66825626 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Membrane-associating_domain(8%)|Myb-like_DNA-binding_domain(100%) MARVEL(0%)|Myb_DNA-binding(100%) 8 12 2 131 22 ENST00000394106.7 ENST00000433154.6 upstream downstream duplicates(1),low_entropy(3) CTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAGCCCACCACCGAGCCGGTGAGCCAGCGCCGCGGGCTGGCCGGCCTGCGCTGCGACCCCGACTACCTGCGCGGCGCaCTCGGCCGCCTCAAGGTCGCCCAAGTG|AAATGAAGACTGACCTGAACTTATTATTGGAGTGTCTAAAGTATCAAATGGACAATGCTTTTTCACAAAAGGAAGCTTTGGTCACTATTCATTCAATTTGTCAACAAAACA___GTAATGCAAGTGTTTATTTTCGGGAAATTGGTGGTTTGATGTTTGTAAAAAATCTTGCAAAGTCAAGTGAACATAGCATGGTAAAAGAAGCAGCCTTATATACATTAGGAGCTATTGCAGAGAAAAATG___TTTACTGTCAGCAGACTTTGTGTACTTC SSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQV|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9159 CMTM4::TERB1 ENSG00000183723.13::ENSG00000249961.10 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1619 TRUE 638 CMTM4 ENSG00000183723.13 protein_coding - - chr16:66614750-66696743:- chr16:66696427:- chr16:66648653-66730646:- chr16:66730330:- TERB1 ENSG00000249961.10 protein_coding - - chr16:66754640-66801620:- chr16:66791019:- chr16:66788543-66835523:- chr16:66824922:- chr16:66657355,chr16:66657359 chr16:66791722,chr16:66791723 NA NA chr16:66691258,chr16:66691262 chr16:66825625,chr16:66825626 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Myb-like_DNA-binding_domain(100%) |Myb_DNA-binding(100%) 1 0 0 116 22 ENST00000563952.1 ENST00000433154.6 upstream downstream mismatches(1) GGCCCGGGCCGGGCGGCAGCATGCGGAGCGGCGAGGAGCTGGACGGCTTCGAGGGCGAGGCCTCGAGCACCTCCATGATCTCGGGCGCCAGCAGCCCGTACCAGCCCACCACCGAGCCG|AAATGAAGACTGACCTGAACTTATTATTGGAGTGTCTAAAGTATCAAATGGACAATGCTTTTTCACAAAAG MRSGEELDGFEGEASSTSMISGASSPYQPTTEP|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9160 CMTM4::TERB1 ENSG00000183723.13::ENSG00000249961.10 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1619 TRUE 638 CMTM4 ENSG00000183723.13 protein_coding - - chr16:66614750-66696743:- chr16:66696340:- chr16:66648653-66730646:- chr16:66730243:- TERB1 ENSG00000249961.10 protein_coding - - chr16:66754640-66801620:- chr16:66790723:- chr16:66788543-66835523:- chr16:66824626:- chr16:66657355,chr16:66657359 chr16:66791722,chr16:66791723 NA NA chr16:66691258,chr16:66691262 chr16:66825625,chr16:66825626 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Membrane-associating_domain(8%)|Myb-like_DNA-binding_domain(100%) MARVEL(0%)|Myb_DNA-binding(100%) 1 0 0 131 70 ENST00000394106.7 ENST00000433154.6 upstream downstream none GCCAGCGCCGCGGGCTGGCCGGCCTGCGCTGCGACCCCGACTACCTGCGCGGCGCaCTCGGCCGCCTCAAGGTCGCCCAAGTG|GTAATGCAAGTGTTTATTTTCGGGAAATTGGTGGTTTGATGTTTGTAAAAAATCTTGCAAAGTCAAGTGAACATAGC QRRGLAGLRCDPDYLRGALGRLKVAQV|vmqvfifgklvv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9161 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39177693:- chr4:39068594-39183878:- chr4:39179313:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 4 2 14 73 3 ENST00000509176.6 ENST00000668468.1 downstream downstream duplicates(1) GAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACA___GAATCTTTCCCTGAAATTAACAAAGGACGTTGATCAAGAAGCCAGGTGTTCCCACATCAGCCGAATGCCCAACAGTCCATCTGCGGATTGGCCTCTACAAGGTGTGGAAGAAAACGGAGGCATAGATTCTCTGCCATTCAGACTGATGTTACAGGACTGCACGGCAGTCAAGACGTTATTATTAAAGATGAAGAGAGTTCTTCAAGAG|AGAGAAAGAAAATGATATATGTCAGAAACTCAGATATCCGTAAAGAAAGAAAGCATTGGGAAAAGAATAAATGAAG___GAACTCTAGACACTGGGTAATTCATAGTGGAA KREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQE|rerk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9162 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39069134:- chr4:39068594-39183878:- chr4:39070754:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 10 2 7 73 37 ENST00000509176.6 ENST00000668468.1 downstream downstream duplicates(2),mismatches(2) GAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACA___GAATCTTTCCCTGAAATTAACAAAGGACGTTGATCAAGAAGCCAGGTGTTCCCACATCAGCCGAATGCCCAACAGTCCATCTGCGGATTGGCCTCTACAAGGTGTGGAAGAAAACGGAGGCATAGATTCTCTGCCATTCAGACTGATGTTACAGGACTGCACGGCAGTCAAGACGTTATTATTAAAGATGAAGAGAGTTCTTCAAGAG|GTTGGCATGCTGAGGGACAGCTGAGTAAGCTTCAATCATGGAGAAAAGATAATATCCTACAGGAAGGAGAAACAATATAACAGGAACCTGGGTCTCTGAATGAACTTGTGAAGCAGAGCTACCTgTCCGCCCTGGGCCACTTGCCCACCTATGAGGTGATAGAAAAACAAACTTCCATCTAATTTAAGCCACTGT KREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQE|vgmlrds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9163 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39115642:- chr4:39068594-39183878:- chr4:39117262:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 1 12 73 2 ENST00000509176.6 ENST00000509449.1 downstream downstream none GTGCCGCAGTAGTTCTTACTCCTATGGAACCAATGATAGAAATGAAGAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACA___GAATCTTTCCCTGAAATTAACAAAGGACGTTGATCAAGAAGCCAGGTGTTCCCACATCAGCCGAATGCCCAACAGTCCATCTGCGGATTGGCCTCTACAAGGTGTGGAAGAAAACGGAGGCATAGATTCTCTGCCATTCAGACTGATGTTACAGGACTGCACGGCAGTCAAGACGTTATTATTAAAGATGAAGAGAGTTCTTCAAGAG|TCTCCCCTCCCATTGTTGCAGCCCTCCAGTAGTCCTATCAGCTTTAATCAGGCTAGAACACTTCATCATGCAAGTGGTAGCAGATAATTAATAATTTCTCTGAGTATTAACTTACATCTCAAAGGT...GGAACCTGGGTCTCTGAATGAACTTGTGAAGCAGAGCTACCTgTCCGCCCTGGGCCACTTGCCCACCTATGAGGTGATAGAAAAACAAACTTCCATCTAAT AAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQE|splpllqpssspisfnqartlhhasgsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9164 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39140911:- chr4:39068594-39183878:- chr4:39142531:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 1 12 73 2 ENST00000509176.6 ENST00000654813.1 downstream downstream duplicates(1) GTGCCGCAGTAGTTCTTACTCCTATGGAACCAATGATAGAAATGAAGAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACA___GAATCTTTCCCTGAAATTAACAAAGGACGTTGATCAAGAAGCCAGGTGTTCCCACATCAGCCGAATGCCCAACAGTCCATCTGCGGATTGGCCTCTACAAGGTGTGGAAGAAAACGGAGGCATAGATTCTCTGCCATTCAGACTGATGTTACAGGACTGCACGGCAGTCAAGACGTTATTATTAAAGATGAAGAGAGTTCTTCAAGAG|GGAAGGGTATCAATTTACTTCTAAGAATTCCCCAAAAGGAACAA...TGTCACAAGTATGGATCATTTTCATAAAATTCATCTCATACCCCTGGGATGAAAGAGTTGATGAG___GTTGGCATGCTGAGGGACAGCTGAGTAAGCTTCAAT AAVVLTPMEPMIEMKKREEPEFPEPSKQNLSLKLTKDVDQEARCSHISRMPNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAVKTLLLKMKRVLQE|grvsiyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9165 ILRUN::SERPINB6 ENSG00000196821.10::ENSG00000124570.21 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34646601:- chr6:34555065-34664636:- chr6:34614378:- SERPINB6 ENSG00000124570.21 protein_coding - + chr6:2948159-2972165:- chr6:2969633:+ chr6:2948393-2972399:- chr6:2969867:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site 5'UTR inversion/5'-5' high none Ig-like_domain_from_next_to_BRCA1_gene(91%),UBA-like_domain(100%)| N_BRCA1_IG(16%),UBA_4(100%)| 11 4 2 777 25 ENST00000374023.8 unknown upstream upstream duplicates(3) GGATACTCAGTTTGTAAAAACATGGCGGATCCAGAATTCTG___GGGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATATGTCGGGGGAGACCAATTTGGACATGTGAACATGGTGATGGTGAGATCGCTAGAGCCCCAAGAGATTGCAGATGTCAGCGTCCAGATGTGCAGCCCCAGCAGAGCAGGAATGTATCAGGGACAGTGGCGGATGTGCACTGCTACAGGACTCTACTATGGAG|GTGTCACTATTGAATTGTGCTTCTCAACTTCTATTAAGGATGCCTTTATTTCCTACTAAATTTAACCATTTAAAGACTGGTTTAATGGAAACTTGGACTTCCTGCTTTGTCCCTCTGTTTCCTTGTGCAGTGTGTATGTGTGTGTGTGTGTG DTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYG|gvtielcfstsikdafisy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9166 EEPD1::CAMK2B ENSG00000122547.12::ENSG00000058404.21 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 933 TRUE 1621 TRUE 640 EEPD1 ENSG00000122547.12 protein_coding + + chr7:36153254-36301538:+ chr7:36155202:+ chr7:36192863-36341147:+ chr7:36194811:+ CAMK2B ENSG00000058404.21 protein_coding - - chr7:44210019-44334577:- chr7:44284225:- chr7:44249618-44374176:- chr7:44323824:- chr7:36188346,chr7:36188343 chr7:44302304,chr7:44302307 NA NA chr7:36227955,chr7:36227952 chr7:44341903,chr7:44341906 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Helix-hairpin-helix_motif(100%)|Calcium/calmodulin_dependent_protein_kinase_II_association_domain(100%),Protein_kinase_domain(96%) HHH(100%),HHH_3(100%)|CaMKII_AD(100%),DUF4440(100%),PK_Tyr_Ser-Thr(50%),Pkinase(50%),SnoaL_3(100%),Synaptobrevin(100%) 1 9 4 267 20 ENST00000242108.9 ENST00000395749.7 downstream downstream duplicates(1),mismatches(1) ACACGAACGGGGGACTGACCTTCACCGCCAAGCCTCACCCGAGCCCCACTTCCCTGAGCCTGCAGAGTGAGGACCTGGACCTGCCGCCAGGGGGGCCCACCCAGATTATCTCCACTCGGCCGTCCGTGGAGGCCTTTGGAGGCACAA...CCTGTGCTGAGGCTGGCCACCTGGAACTTGCAGGGCTGTTCCGTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTGCATGACACTCCTGGAAAACAG|GGGGGCTTTCTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGCTGTCAGCCAGAG___ATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCG___TGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACT PVLRLATWNLQGCSVEKANNPGVREVVCMTLLENr|GAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSNIVRLHDSISEEGFH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Calcium/calmodulin-dependent protein kinase type II subunit beta CAMK CAMK2 Q13554 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9167 EEPD1::CAMK2B ENSG00000122547.12::ENSG00000058404.21 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1621 TRUE 640 EEPD1 ENSG00000122547.12 protein_coding + + chr7:36153254-36301538:+ chr7:36155202:+ chr7:36192863-36341147:+ chr7:36194811:+ CAMK2B ENSG00000058404.21 protein_coding - - chr7:44210019-44334577:- chr7:44263064:- chr7:44249618-44374176:- chr7:44302663:- chr7:36188346,chr7:36188343 chr7:44302304,chr7:44302307 NA NA chr7:36227955,chr7:36227952 chr7:44341903,chr7:44341906 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Helix-hairpin-helix_motif(100%)|Calcium/calmodulin_dependent_protein_kinase_II_association_domain(100%),Protein_kinase_domain(84%) HHH(100%),HHH_3(100%)|CaMKII_AD(100%),DUF4440(100%),PK_Tyr_Ser-Thr(25%),Pkinase(25%),SnoaL_3(100%),Synaptobrevin(100%) 2 1 2 267 50 ENST00000242108.9 ENST00000700284.1 downstream downstream none GAGAGGTCCAGGCCCCCATCCACCCACACGAACGGGGGACTGACCTTCACaGCCAAGCCTCACCCGAGCCCCACTTCCCTGAGCCTGCAGAGTGAGGACCT...CCCACCCAGATTATCTCCACTCGGCCGTCCGTGGAGGCCTTTGGAGGCACAAGGGATGGGAGGCCTGTGCTGAGGCTGGCCACCTGGAACTTGCAGGGCTGTTCCGTGGAGAAGGCCAACAACCCCGGGGTGCGAGAGGTGGTGTGCATGACACTCCTGGAAAACAG|ATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCG___TGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGTAAGTTCCAGAGCTGGGGACTCT PTQIISTRPSVEAFGGTRDGRPVLRLATWNLQGCSVEKANNPGVREVVCMTLLENr|speagergsdlppseafqhrasprqhlrgglplpglrsvssragd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit beta CAMK CAMK2 Q13554 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9170 B3GALT1::STK39 ENSG00000172318.6::ENSG00000198648.12 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1622 TRUE 641 B3GALT1 ENSG00000172318.6 protein_coding + + chr2:167293001-167874045:+ chr2:167490277:+ chr2:168149511-168730555:+ chr2:168346787:+ STK39 ENSG00000198648.12 protein_coding - - chr2:167954020-168247595:- chr2:168017095:- chr2:168810530-169104105:- chr2:168873605:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Oxidative-stress-responsive_kinase_1_C-terminal_domain(86%) |OSR1_C(53%) 1 1 3 149 717 ENST00000392690.4 ENST00000355999.5 downstream downstream duplicates(1) GCAGCATCTTCGGGACCCTGGCTGCAGCGTCCCTGTGGCCCGCGCGCCAGCCCAGCGGCCGGAGACCACGCGCCCCGCGG___ACCCATTAGAAACGCTTCAAG...CTGCTCAGTCCAGGAGTGGAGGGATTTTGTGAAGACACAGATGCTCCCTAAAAGGAGTGCAGAAATTTTCATCATAGG|AAACTCCAGAAAGGAACTTAATGACATACGATT...GCTGGCTTGGTGGATGGTCACGATGTAGTTATAG___TGGCTGCTAATTTACAGAAGATTGTAGATGATCCCAAAGCTTTAAAAACATTGACATTTAAGTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN STE20/SPS1-related proline-alanine-rich protein kinase STE STE20 FRAY Q9UEW8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9171 B3GALT1::STK39 ENSG00000172318.6::ENSG00000198648.12 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1622 TRUE 641 B3GALT1 ENSG00000172318.6 protein_coding + + chr2:167293001-167874045:+ chr2:167293334:+ chr2:168149511-168730555:+ chr2:168149844:+ STK39 ENSG00000198648.12 protein_coding - - chr2:167954020-168247595:- chr2:167964726:- chr2:168810530-169104105:- chr2:168821236:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Oxidative-stress-responsive_kinase_1_C-terminal_domain(16%) |OSR1_C(0%) 1 0 3 99 961 ENST00000392690.4 ENST00000355999.5 downstream downstream duplicates(1) GGAGCACGAGGAGGCGGGGGCGGCAGAGAAGTGATGCTGGCGCCGGGGATCGGGGCAGCGGCAGCGGAGCAGCAGCATCTTCGGGACCCTGGCTGCAGCGTCCCTGTGGCCCGCGCGCCAGCCCAGCGGCCGGAGACCACGCGCCCCGCGG|TGGCTGCTAATTTACAGAAGATTGTAGATGATCCCAAAGCTTTAAAAACATTGACATTTAAGTTG___GCTTCTGGCTGTGATGGGTCGGAGATTCCTGATGAAGTGAAGCTGATTGGGTTTGCTCAGTTGAGTGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN STE20/SPS1-related proline-alanine-rich protein kinase STE STE20 FRAY Q9UEW8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9172 B3GALT1::STK39 ENSG00000172318.6::ENSG00000198648.12 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1622 TRUE 641 B3GALT1 ENSG00000172318.6 protein_coding + + chr2:167293001-167874045:+ chr2:167490277:+ chr2:168149511-168730555:+ chr2:168346787:+ STK39 ENSG00000198648.12 protein_coding - - chr2:167954020-168247595:- chr2:167964726:- chr2:168810530-169104105:- chr2:168821236:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Oxidative-stress-responsive_kinase_1_C-terminal_domain(16%) |OSR1_C(0%) 0 1 3 149 961 ENST00000392690.4 ENST00000355999.5 downstream downstream duplicates(1) GCTCAGTCCAGGAGTGGAGGGATTTTGTGAAGACACAGATGCTCCCTAAAAGGAGTGCAGAAATTTTCATCATAGG|TGGCTGCTAATTTACAGAAGATTGTAGATGATCCCAAAGCTTTAAAAACATTGACATTTAAGTTG___GCTTCTGGCTGTGATGGGTCGGAGATTCCTGATGAAGTGAAGCTGATTGGGTTTGCTCAGTTGAGTGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN STE20/SPS1-related proline-alanine-rich protein kinase STE STE20 FRAY Q9UEW8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9177 TUSC3::SGCZ ENSG00000104723.21::ENSG00000185053.14 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUSC3 ENSG00000104723.21 protein_coding + + chr8:15417215-15766649:+ chr8:15623249:+ chr8:15274724-15624158:+ chr8:15480758:+ SGCZ ENSG00000185053.14 protein_coding - + chr8:14084845-15238431:- chr8:14713990:+ chr8:13942354-15095940:- chr8:14571499:+ chr8:15641699,chr8:15641697 chr8:14712763,chr8:14712758 NA NA chr8:15499208,chr8:15499206 chr8:14570272,chr8:14570267 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none OST3_/_OST6_family__transporter_family(17%)| OST3_OST6(0%)| 0 1 7 738 7 ENST00000382020.8 unknown downstream upstream mismappers(2) GCGGCTGCGGTACCTGCCCACCGGGAGCTTTCCCTTCCTTCTCCTGCTGCTGCTGCTCTGCATCCAGCTCGGGGGAGGACAGAAGAAAAAGGAG___AATCTTTTAGCTGAAAAAGTAGAGCAGCTGATGGAATGGAGTTCCAGACGCTCAATCTTCCGAATGAATGGTGATAAATTCCGAAAATTTATAAAGGCACCACCTCGAAACTATTCCATGATTGTTATGTTCACTGCTCTTCAGCCTCAGCGGCAGTGTTCTGTGTGCAG|ATGGAGTCTCACTCTGTACCCAGGCTGGAGTGCAATGGTGCGATCTCAGCTCACTACAACCTCTGCCTCCTTGGTTGAAGCAATTCTTCTGCCTCAGCCTCCCGAGTACCTGGGATTACAG___GTTCAAAAGAAATGCACAAATATTAAGTCAAAAATAAGATCACGGGATCCTTTTCAAGATGGCCGACCAGACGCACCAG RLRYLPTGSFPFLLLLLLLCIQLGGGQKKKENLLAEKVEQLMEWSSRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCr|wsltlypgwsamvrsqltttsaslveaillpqppeylglqvqkkctnikskirsrdpfqdgrpdap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9178 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1624 TRUE 642 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 4 34 24 ENST00000656491.1 ENST00000646670.1 downstream upstream none GCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGcGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9179 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1624 TRUE 642 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127006555:+ chr8:127568568-128431295:+ chr8:128018800:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 4 640 251 ENST00000651587.1 ENST00000645198.1 downstream upstream none GGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATCCAGCCACCTCTTGGGATGCACACGTTTCTCTTCAACTGCGTGATGTGAACTGCGTCACATG___TGAATTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9180 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1624 TRUE 642 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 3 640 24 ENST00000651587.1 ENST00000646670.1 downstream upstream none GGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGcGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9181 PCAT1::PVT1 ENSG00000253438.5::ENSG00000249859.14 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126877790:+ chr8:127568568-128431295:+ chr8:127890035:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion medium none none none 1 0 1 329 686 ENST00000644627.1 ENST00000651587.1 downstream upstream none GGCCCTTGGGACAGATTCTTCTCTTGGAATaTGAGTGTTCTCAG___AAGAGGCAGAGGATGTTGACACAAACTTACAGACTGGGACTCCAAGGATCAGCCAGATGAAATGCTATGTGCAGAGaCTTCATTTCaCAGCTCAGTGGTGGACAGCAGAGGACTCTAAG|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9182 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1624 TRUE 642 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127414888:+ chr8:127568568-128431295:+ chr8:128427133:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 1 0 640 48 ENST00000651587.1 ENST00000645215.1 downstream upstream none GGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCATTCTCTCTGGGTGAA...GCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTCCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTAGCATCATGGTATGGCAGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9183 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1624 TRUE 642 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 685 13 ENST00000651587.1 ENST00000521586.2 downstream upstream low_entropy(1) TGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAA...TCAGCTGGGCTTGAG|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 TRUE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9184 CPQ::ENSG00000254180 ENSG00000104324.16::ENSG00000254180.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPQ ENSG00000104324.16 protein_coding + + chr8:96645242-97149654:+ chr8:96880005:+ chr8:97657470-98161882:+ chr8:97892233:+ ENSG00000254180 ENSG00000254180.2 lncRNA - - chr8:90198389-90620077:- chr8:90534626:- chr8:91210617-91632305:- chr8:91546854:- chr8:96952490,chr8:96952489 chr8:90548640,chr8:90548641 NA NA chr8:97964718,chr8:97964717 chr8:91560868,chr8:91560869 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Peptidase_family_M28(7%)| NIR_SIR(100%),Peptidase_M28(0%)| 2 2 0 13 3 ENST00000220763.10 ENST00000521975.2 downstream downstream mismatches(1) CCAAGGTtGGGGCTTTGGCATCTCTCATTCGATaCGTGGCCTCCTTCTCCATCTACAG___TCCTCAaACAGGaATTgAGGAATACCcGGATGGCGTGCCCAAG...ATGGCTTCTCATGGGATCAAAATTGTCATTCAGCTAAAGATGGGGGCAAAGACCTACCCAGATACTGATTCCTTCAACACTGTAGCAGAGATCACTGGGAGCAAATATCCAGAACAG|AAACCACAATTAAAAGTTGTTCTTCCTGCCTCTGCTTCTTGACCAACCCCTGAGTGGCCCTGTATAGTGTTCTCCCTAGGAAACT___GTGGATTCTACTTCTGGTGAAGATGACGTGAACATTGCTGAAATGGCAACAAAGGATTCAGAAG...CCTTAACCTcCAGCAACaGCgGCCCCATCAGCCAtGAGCCATCAACATCAGGAAGACCCCCCCACCAGGAGAAAGATTAGGTCTCACTGAAGGCTTGAAT MASHGIKIVIQLKMGAKTYPDTDSFNTVAEITGSKYPEQ|kpqlkvvlpasas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9185 DYRK1A::USP7 ENSG00000157540.22::ENSG00000187555.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1625 TRUE 643 DYRK1A ENSG00000157540.22 protein_coding + + chr21:37365573-37526358:+ chr21:37367628:+ chr21:38737875-38898660:+ chr21:38739930:+ USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930397:- chr16:8985954-9069185:- chr16:9024254:- chr21:37407287,chr21:37407285 chr16:8951841,chr16:8951843 NA NA chr21:38779589,chr21:38779587 chr16:9045698,chr16:9045700 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |ICP0-binding_domain_of_Ubiquitin-specific_protease_7(100%),MATH_domain(100%),Ubiquitin-specific_protease_C-terminal(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) |MATH(100%),UCH(100%),UCH_1(100%),USP7_C2(100%),USP7_ICP0_bdg(100%) 1 3 0 111 483 ENST00000647188.2 ENST00000673704.1 downstream downstream duplicates(2),mismatches(1) AGAGGCTGCCGGGGCGGCGCTGGCTGCGGAGGCCGCGGCGGGAGCGCGGCGCGGGAGCCCGAGGCTGAGACTCACCGGAGGAAGCGGCGCGAGCGCCCCGCCATCGTCCCG|CGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGGAGGAGGACATGGAGGATG___ACACCAGTTGGCGCTCCGAGGCAACCTTTCAGTTCACTGTGGAGCGCTTCAGCAGACTGAGTGAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Dual specificity tyrosine-phosphorylation-regulated kinase 1A CMGC DYRK DYRK1 Q13627 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9186 DYRK1A::USP7 ENSG00000157540.22::ENSG00000187555.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1625 TRUE 643 DYRK1A ENSG00000157540.22 protein_coding + + chr21:37365573-37526358:+ chr21:37375117:+ chr21:38737875-38898660:+ chr21:38747419:+ USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930397:- chr16:8985954-9069185:- chr16:9024254:- chr21:37407287,chr21:37407285 chr16:8951841,chr16:8951843 NA NA chr21:38779589,chr21:38779587 chr16:9045698,chr16:9045700 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |ICP0-binding_domain_of_Ubiquitin-specific_protease_7(100%),MATH_domain(100%),Ubiquitin-specific_protease_C-terminal(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) |MATH(100%),UCH(100%),UCH_1(100%),USP7_C2(100%),USP7_ICP0_bdg(100%) 1 1 0 9 483 ENST00000647188.2 ENST00000673704.1 downstream downstream none CCGGGGAGACTGCTGCTGTCGCTGCTGCTGATCGCGGCCCAG___AAGAGGGAATAAAGGACAAGGTGTACAGAGTGCAGTGGGATTTTATAGGAATAGTTATCATCTTAAA|CGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Dual specificity tyrosine-phosphorylation-regulated kinase 1A CMGC DYRK DYRK1 Q13627 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9187 NLRC5::KIFC3 ENSG00000140853.17::ENSG00000140859.16 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NLRC5 ENSG00000140853.17 protein_coding + + chr16:56989485-57083531:+ chr16:57042065:+ chr16:57023397-57117443:+ chr16:57075977:+ KIFC3 ENSG00000140859.16 protein_coding - + chr16:57758217-57863053:- chr16:57827531:+ chr16:57792129-57896957:- chr16:57861435:+ chr16:57042311,chr16:57042311 chr16:57826132,chr16:57826130 NA NA chr16:57076223,chr16:57076223 chr16:57860036,chr16:57860034 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Atypical_caspase_recruitment_domain(100%),Leucine_Rich_repeat(30%),NACHT_domain(100%),NLRC4_helical_domain_HD2(100%)| Atypical_Card(100%),LRR_6(42%),NACHT(100%),NLRC4_HD2(100%)| 2 1 0 14 7 ENST00000262510.10 unknown downstream upstream mismatches(1) CCGGGGTGCATTGTGTGCTGAGGGCCGTGAGaGCGTGCTGGACCCTGGCAGAGCTGCACATCAG___CCTGCAGCACAAAACTGTGATCTTCATGTTTGCCCAG...CTCTGAGCTGCCTCTGAGCTCCCGAAGGATGAG___GCTGACACATTGTGGCCTCCAAGAAAAGCACCTAGAGCAGCTCTGCAAGGCTCTGGGAGGAAGCTGCC...TGCAGCCCGGCTGGCTCAGCTGCTCCCAGGGCTGGGAGCTCTGCAGTCCTTGAA|AGTTCCTGGAGCTTCCGTTCTGCTGAGCCTCATGCTGCCCATGCGACACATCACGACCATTTTCAGGACCACAACCTCCCTGTCCCATGGCCaTTTTCTGAGGTCTAGAAGTCACCCCCTTGGGCTTAAGCAACCACGAGG AARLAQLLPGLGALQSLk|vpgasvllslmlpmrhittifrtttslshghflrsrshplglkqpr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9193 NFE2L2::AGPS ENSG00000116044.17::ENSG00000018510.18 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFE2L2 ENSG00000116044.17 protein_coding - + chr2:177218667-177392756:- chr2:177219314:+ chr2:178083395-178257484:- chr2:178084042:+ AGPS ENSG00000018510.18 protein_coding + + chr2:177392746-177567024:+ chr2:177538074:+ chr2:178257474-178431752:+ chr2:178402802:+ chr2:177225956 chr2:177526631 NA NA chr2:178090684 chr2:178391359 NA NA antisense sense unknown 3'UTR CDS/splice-site deletion/read-through/3'-3' medium none |FAD_linked_oxidases__C-terminal_domain(13%) |FAD-oxidase_C(0%),TPR_16(100%),TPR_6(100%) 5 6 7 9751 441 unknown ENST00000264167.11 downstream upstream duplicates(5),mismatches(2) TTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTG___GTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACAGCAGAAAAGG|TGGGCAAGTTACGGAAGCAATGGCTAAAGGAAAGTATCTCTGATGTCGGCTTTGGGATGCTGAAGTCTGTCAAGGAATATGTGGACCCCAATAACATCTTTGGAAACAGAAACCTTTTATAAATCCATTAGTACCATTACAAAAAAATGTCAATTTTTTTTTTAAGTTTTCAACTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9194 ZNF600::TMEM132C ENSG00000189190.11::ENSG00000181234.10 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF600 ENSG00000189190.11 protein_coding - - chr19:52749942-52786807:- chr19:52776330:- chr19:53253195-53290060:- chr19:53279583:- TMEM132C ENSG00000181234.10 protein_coding + - chr12:128267170-128707911:+ chr12:128592601:- chr12:128751715-129192456:+ chr12:129077146:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron translocation/5'-5' medium none none none 1 8 3 14 13 unknown unknown upstream downstream mismappers(1) GGCAgGAGAATTGCTTGAACCTGGGTGGCCGAGGTTGCAGTGAGCTGAGATTCTGCCACTGCACTCTAGCCTGTGCAATAGAGTGAGACTCCATCTCAAAAAAAAAAAAAGTAAGAAGTATTGGGAAGGATTATATGTATGCCTGTGTGTGTCCATTCAGCGACCTTGTAGGATGCTCCGTGTTCTTACCCTTGGAC|AATTCCATTGTCACAGCCTGGCTGCCAGGAAGTCGTTCTTTATCTGGAGTGGAAATCTATGGGGATAACTTCCTGCTGTTAGTCCCAAGTCAGCTTTGGAGGATAATGAACTTCACTCATTCATCCATTGCATCACTCATCTGGTCCTTCCATCATTTGTCCATCCACTGAACACACATTCCTGAGAACTTGCCATTCAGAAACTGGGAGGAGTGTGTGGTCATTGGGGAAGATGCAAACACGGGAGCTTCTGTTCCCCTGGGGTTAGGAGTCCCATTCTCAAATGTCCAAGAGTGCCAGTGAGTAGGAGATAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9206 NRXN3::CEP128 ENSG00000021645.20::ENSG00000100629.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1631 FALSE NA NRXN3 ENSG00000021645.20 protein_coding + + chr14:78170373-79868291:+ chr14:79280538:+ chr14:78636716-80334634:+ chr14:79746881:+ CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80580423:- chr14:80943326-81425861:- chr14:81046767:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none EGF-like_domain(100%),Laminin_G_domain(81%)| EGF(100%),Laminin_G_1(42%),Laminin_G_2(29%)| 0 1 2 714 101 ENST00000281127.11 ENST00000555265.6 downstream downstream none TTCAAACTGCCCATCTGTAGTGGTCCCGTGCGTTGACCATGCACCTGAGAATCCACGCGAGACGGAGCCCTCCTCGCCGGCCGGCCTGGACGCTTGGGATC...GTTCTGGGGATGTATCGTCAGCTCTGTATGGAGTTCTTCTAATGTAGCTTCCTCCTCCTCCACCTCTTCCTCGCCGGGGTCTCACTCTCAGCACGAGCACC...CTATTTCTATCTATCGTTCCCCTGTTTCCCTTCGAGGAGGACACG|ATCTACTGGAAGAGACCCAAAGAAAAGATGAAGAAATGGGATCTCTGCAG___GACCGT...TGAGAGAACTGATGGAAGATATTCCAAATACAGGGTTCGCAGAAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTG ISIYRSPVSLRGGH|dLLEETQRKDEEMGSLQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9223 LRRC3C::STAG1 ENSG00000204913.7::ENSG00000118007.13 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC3C ENSG00000204913.7 protein_coding + + chr17:39927732-39944999:+ chr17:39927814:+ chr17:38083985-38101252:+ chr17:38084067:+ STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136630981:- chr3:136055078-136471245:- chr3:136349823:- chr17:39934811,chr17:39934809 chr3:136680143,chr3:136680145 NA NA chr17:38091064,chr17:38091062 chr3:136398985,chr3:136398987 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation medium none |STAG_domain__(100%) |STAG(100%) 1 1 0 18 101 ENST00000377924.6 ENST00000383202.7 downstream downstream none CGGCCTCTTCGGGGACGCACGGTTGGAAGTTGTACCGTGACGTGATGGTCAGATCGGATGATAGAATTTTG|GATTGCCTTTGAGGTTATTTTAAAAGTTTTGAGTTGTACAGCACTTGATTA...TGAAAGGACCTCTCCAGCAATGATTACTTCAGAATTACCAGTGTTACA___GGATTCAACTAATGAAACTACTGCCCATTCCGATGCTGGCAGCGAGCTTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 9226 UXS1::ENSG00000234162 ENSG00000115652.15::ENSG00000234162.3 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UXS1 ENSG00000115652.15 protein_coding - - chr2:106093308-106194301:- chr2:106166056:- chr2:106709764-106810757:- chr2:106782512:- ENSG00000234162 ENSG00000234162.3 lncRNA - - chr2:105874509-105962386:- chr2:105941261:- chr2:106490965-106578842:- chr2:106557717:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none UDP-glucuronate_decarboxylase_N-terminal(46%)| GDP_Man_Dehyd(28%),UXS1_N(77%)| 0 3 5 233 4 ENST00000283148.12 ENST00000652190.1 upstream downstream mismatches(1) CTGCTGCTGGGCATCGCCTTGCTGGCCTACGTCGCCT___CTGTTTGGGGCAACTTCGTTAATATGAG|GCCAAGTGGACAGTGTTGATAAAGTCTgTAGTAGTCTACAGTGATTTCCTAGGCCTTCACATTCACCCACTGGCTCACCCAAAGCAACTTCCAGTCCTGCAAGCTCCATTCATG___TCCGCCCCGACTAGTTGTGGAgaATGTCTGCCtGCgGCCTACAGAA LLLGIALLAYVASVWGNFVNMr|psgqc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9239 ENSG00000264968::STAG1 ENSG00000264968.1::ENSG00000118007.13 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000264968 ENSG00000264968.1 lncRNA + + chr17:39927742-39939601:+ chr17:39927814:+ chr17:38083995-38095854:+ chr17:38084067:+ STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136630981:- chr3:136055078-136471245:- chr3:136349823:- chr17:39934811,chr17:39934809 chr3:136680143,chr3:136680145 NA NA chr17:38091064,chr17:38091062 chr3:136398985,chr3:136398987 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation low none |STAG_domain__(100%) |STAG(100%) 1 1 0 18 101 ENST00000578802.1 ENST00000383202.7 downstream downstream none CGGCCTCTTCGGGGACGCACGGTTGGAAGTTGTACCGTGACGTGATGGTCAGATCGGATGATAGAATTTTG|GATTGCCTTTGAGGTTATTTTAAAAGTTTTGAGTTGTACAGCACTTGATTA...TGAAAGGACCTCTCCAGCAATGATTACTTCAGAATTACCAGTGTTACA___GGATTCAACTAATGAAACTACTGCCCATTCCGATGCTGGCAGCGAGCTTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 9253 KIF26B::SMYD3 ENSG00000162849.16::ENSG00000185420.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1638 TRUE 644 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245155487:+ chr1:245318287-245872734:+ chr1:245318789:+ SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245764149:- chr1:245912644-246670614:- chr1:245927451:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none none none 0 1 0 221 332 ENST00000407071.7 ENST00000490107.6 downstream downstream none CTCCACCAGGGGCAAGAAATACGGG|GATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGC...CTGAGACTG___GCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCGACGCCAACATCAG STRGKKYG|dffprkpsrqrgssdeswqtaatsr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma,Sarcoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma,Sarcoma,Bladder Urothelial Carcinoma LUNG,LUNG,LUNG,LUNG,HEAD_AND_NECK,BONE_AND_SOFT_TISSUE,HEAD_AND_NECK,UTERUS,BONE_AND_SOFT_TISSUE,BLADDER exact 245319985,245319985,245772830|245704252,245530669,245319985,245319985|245319985|245319985,245319985|245319985|245318789,245319985,245583047,245319985 FALSE,FALSE,FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|TRUE,FALSE,FALSE,FALSE 246093239,246093239,246093239|246027188,245927451,246093239,246027188|245927451|245912966,246093239|245927451|245912966,246027188,245927451,246093239 FALSE,FALSE,FALSE|FALSE,TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,TRUE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9254 KIF26B::SMYD3 ENSG00000162849.16::ENSG00000185420.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1638 TRUE 644 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245863886:- chr1:245912644-246670614:- chr1:246027188:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none none 0 1 0 172 415 ENST00000407071.7 ENST00000490107.6 downstream downstream none CAAGAGGCAGGCCCTGAGGTTGCTCCTCCCGGGGCCCTTCCCGGGCAAG|GATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAAT...GGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAG___GATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGC KRQALRLLLPGPFPGK|DADMLTGDEQVWKEVQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma,Sarcoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma,Sarcoma,Bladder Urothelial Carcinoma LUNG,LUNG,LUNG,LUNG,HEAD_AND_NECK,BONE_AND_SOFT_TISSUE,HEAD_AND_NECK,UTERUS,BONE_AND_SOFT_TISSUE,BLADDER exact 245319985,245319985,245772830|245704252,245530669,245319985,245319985|245319985|245319985,245319985|245319985|245318789,245319985,245583047,245319985 TRUE,TRUE,FALSE|FALSE,FALSE,TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,TRUE,FALSE,TRUE 246093239,246093239,246093239|246027188,245927451,246093239,246027188|245927451|245912966,246093239|245927451|245912966,246027188,245927451,246093239 FALSE,FALSE,FALSE|TRUE,FALSE,FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9255 KIF26B::SMYD3 ENSG00000162849.16::ENSG00000185420.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1638 TRUE 644 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245915640:- chr1:245912644-246670614:- chr1:246078942:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |SET_domain(1%) |SET(0%) 0 1 0 172 327 ENST00000407071.7 ENST00000490107.6 downstream downstream none GAGGCAGGCCCTGAGGTTGCTCCTCCCGGGGCCCTTCCCGGGCAAG|CTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGC...GGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAG___GATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAG RQALRLLLPGPFPGK|LTICYLDMLMTSEERRKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma,Sarcoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma,Sarcoma,Bladder Urothelial Carcinoma LUNG,LUNG,LUNG,LUNG,HEAD_AND_NECK,BONE_AND_SOFT_TISSUE,HEAD_AND_NECK,UTERUS,BONE_AND_SOFT_TISSUE,BLADDER exact 245319985,245319985,245772830|245704252,245530669,245319985,245319985|245319985|245319985,245319985|245319985|245318789,245319985,245583047,245319985 TRUE,TRUE,FALSE|FALSE,FALSE,TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,TRUE,FALSE,TRUE 246093239,246093239,246093239|246027188,245927451,246093239,246027188|245927451|245912966,246093239|245927451|245912966,246027188,245927451,246093239 FALSE,FALSE,FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9256 KIF26B::SMYD3 ENSG00000162849.16::ENSG00000185420.19 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1638 TRUE 644 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245367367:+ chr1:245318287-245872734:+ chr1:245530669:+ SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245863886:- chr1:245912644-246670614:- chr1:246027188:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none none 0 1 0 236 415 ENST00000407071.7 ENST00000490107.6 downstream downstream none CGAGAACCAACGGGGTCACCCTGTACCCATACCAG|GATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATT...CTGAAGGCACACTGGA___AGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAA RTNGVTLYPYQ|DADMLTGDEQVWKEVQESLKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma,Sarcoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma,Sarcoma,Bladder Urothelial Carcinoma LUNG,LUNG,LUNG,LUNG,HEAD_AND_NECK,BONE_AND_SOFT_TISSUE,HEAD_AND_NECK,UTERUS,BONE_AND_SOFT_TISSUE,BLADDER exact 245319985,245319985,245772830|245704252,245530669,245319985,245319985|245319985|245319985,245319985|245319985|245318789,245319985,245583047,245319985 FALSE,FALSE,FALSE|FALSE,TRUE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE 246093239,246093239,246093239|246027188,245927451,246093239,246027188|245927451|245912966,246093239|245927451|245912966,246027188,245927451,246093239 FALSE,FALSE,FALSE|TRUE,FALSE,FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9262 MYH9::APOL1 ENSG00000100345.23::ENSG00000100342.22 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36316517:- chr22:36677326-36784055:- chr22:36712562:- APOL1 ENSG00000100342.22 protein_coding + - chr22:36253071-36267530:+ chr22:36255398:- chr22:36649117-36663576:+ chr22:36651444:- chr22:36315813,chr22:36315813 chr22:36255569,chr22:36255783 NA NA chr22:36711858,chr22:36711858 chr22:36651615,chr22:36651829 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(55%)| Myosin_N(100%),Myosin_head(72%)| 53 40 48 723 164 ENST00000685801.1 unknown upstream downstream duplicates(7),low_entropy(1),mismappers(4),mismatches(7) CTCACCCCGCGCATCAAGGTGGGACGGGATTACGTCCAGAAGGCGCAGACTAAAGAGCAG___GCTGACTTTGCCATCGAGGCCTTGGCCAAGGCGACCTATGAGCGGATGTTCCGCTGGCTGGTGCTGCGCATCAACAAGGCTCTGGACAAGACCAAGAGGCAGGGCGCCTCCTTCATCGGGATCCTGGACATTGCCGGCTTCGAGATCTTTGAT|GCCAGGGGAGCCATCTCAACACCATCTCATGAGCCATGAGGACACAGGAGGACCAGGAGAGAGCAGAGGAGCAGGAGGGcAGAGAGAGCTGGTGCCTCGGATTCCCCCGACACTTGTGAGGAGCTGCACCCTGGATCCCATCCTCCTTGGTCATTGTTGGCCTGGCTCAGACCCTGACCTGGAGCCTCTGCTGAATATTGAGGCCGGATATTGACCGTTAGCCTCAACTAGGATA LTPRIKVGRDYVQKAQTKEQADFAIEALAKATYERMFRWLVLRINKALDKTKRQGASFIGILDIAGFEIFD|argaistpshep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9265 SOX5::PTPN22 ENSG00000134532.20::ENSG00000134242.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 935 TRUE 1641 TRUE 645 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23543211:- chr12:23682438-24715478:- chr12:23696145:- PTPN22 ENSG00000134242.16 protein_coding - - chr1:113813811-113871753:- chr1:113830029:- chr1:114356433-114414375:- chr1:114372651:- chr12:23542344 chr1:113832834 NA NA chr12:23695278 chr1:114375456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none HMG_(high_mobility_group)_box(51%)| HMG_box(1%),HMG_box_2(1%)| 36 39 32 109 119 ENST00000646273.1 ENST00000538253.5 upstream downstream duplicates(8),mismatches(4) GTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGG|AACTACATCAAGATCGTTCTTCTCCCCCACCTCCTCTCCCAGAAAGAACTCTAGAGTCCTTCTTTCTTGCCGATGAAGATT___GTATGCAGGCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCA VSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKIL|eLHQDRSSPPPPLPERTLESFFLADEDCMQAQSIETYSTSYPDTMENSTSSKQTLKTPGKSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9266 SOX5::PTPN22 ENSG00000134532.20::ENSG00000134242.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 936 TRUE 1641 TRUE 645 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23543211:- chr12:23682438-24715478:- chr12:23696145:- PTPN22 ENSG00000134242.16 protein_coding - - chr1:113813811-113871753:- chr1:113829707:- chr1:114356433-114414375:- chr1:114372329:- chr12:23542344 chr1:113832834 NA NA chr12:23695278 chr1:114375456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none HMG_(high_mobility_group)_box(51%)| HMG_box(1%),HMG_box_2(1%)| 5 9 18 109 126 ENST00000646273.1 ENST00000538253.5 upstream downstream duplicates(4),mismatches(1) CAGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGG|GTATGCAGGCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAG___AGTTTGAAAATTTTGCGAAACATGAAAAAGA___GTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTG___GTTTTGCAAACCGTTTTTCAAAACCCAAAGGACCAAGGAATCCACC GSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKIL|gMQAQSIETYSTSYPDTMENSTSSKQTLKTPGKSFTRSKSLKILRNMKKSICNSCPPNKPAESVQSNNSSSFLNFGFANRFSKPKGPRNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9267 ARHGEF7::TEX29 ENSG00000102606.20::ENSG00000153495.11 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF7 ENSG00000102606.20 protein_coding + + chr13:111114559-111305737:+ chr13:111205373:+ chr13:111766906-111958084:+ chr13:111857720:+ TEX29 ENSG00000153495.11 protein_coding + - chr13:111316184-111344249:+ chr13:111326187:- chr13:111968531-111996596:+ chr13:111978534:- chr13:111208862 chr13:111326529 NA NA chr13:111861209 chr13:111978876 NA NA sense antisense unknown CDS/splice-site intron inversion/3'-3' high none Calponin_homology_(CH)_domain(100%)| CH(100%)| 17 8 42 424 105 ENST00000469877.5 unknown downstream downstream duplicates(4),mismatches(1) AAAAAAGG___GTCTACCCCGAGCCCCGGAGCGAGAGCGAGTGCCTGAGCAACATCCGCGAGTTCCTGCGCGGCTGCGGGGCTTCCCTGCGGCTGGAG___ACGTTTGATGCAAATGATTTGTATCAGGGGCAGAATTTTAACAAGGTCCTCAGTTCCTTAGTGACTCTAAATAAAGTAACAGCAG|CAGACACCAGCCAGCACCCAGCTCGTGATGCCCGAACGCTCTTCCACCCCATCTGGGAAGATCCAGACGAAACCCAAGATCCCACCAGCTTGGACGCAGCGGAGCCGGGATCCACAGAGACCTCTGGCTTCAGGGTCCTGCTGTCTCCACAGTGCCAGGCGCCCTCCCCACCGTCCCCAGACACGGGAGGAGAAGCCCCAGCAGCACAGAGGCATCTGCTCACAGAGCCAGGAGAACAAAGGTTTCTGAAGACTTGCTCCAGGTGACAGCGGATGTTTAATTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9268 KIAA0319L::ENSG00000284719 ENSG00000142687.19::ENSG00000284719.3 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA0319L ENSG00000142687.19 protein_coding - - chr1:35393883-35557950:- chr1:35474805:- chr1:35859484-36023551:- chr1:35940406:- ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39804878:+ chr1:40265091-40275122:+ chr1:40270550:+ chr1:35474798,chr1:35474800 chr1:39803575,chr1:39803573 NA NA chr1:35940399,chr1:35940401 chr1:40269247,chr1:40269245 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 11 13 41 219 109 ENST00000697000.1 ENST00000641382.1 upstream upstream duplicates(1),mismatches(3) CAGATTGCTGTCCCCCAGCCAGTGGCTCCCTCCTACAGTTATGCTACCCCTACCCCCCAGGCCTCTTTCCAGAGCACCTCAGCACCATACCCAG___TTATAAAGGAACTGGTGGTATCTGCTGGAGAGAGTGTCCAGATAACCCTGCCTAAGAATGAAGTTCAATTAAATGCATATGTTCTCCAAGAACCACCTAAAG|ATCCATTATTTATTCTTCTCCATCTTGTTCTGTGTTCCTGGAAGCCAACCTTTATAAGCTGCAGGAAATGGATTTCCTACTCTCCACCTTCTGATTGGGCTTGACCAACGGGGAGCACTGGCAGAAGACAAGCATGGGAGGAAAAAGAGATCAGGGTATTCATTTCCCCAGATCCCTCCCTGTCCTCTACTTAAAGGTCATAAGTCCATCCAGGTGTCATCTCTTATGTAGGATTCTAGCGACATCTTCTCCCCTTGTT QIAVPQPVAPSYSYATPTPQASFQSTSAPYPVIKELVVSAGESVQITLPKNEVQLNAYVLQEPPK|dplfillhlvlcswkptfiscrkwisysppsdwa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9270 MARCHF6::FILIP1L ENSG00000145495.17::ENSG00000168386.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1642 TRUE 646 MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10414502:+ chr5:10353807-10440500:+ chr5:10414614:+ FILIP1L ENSG00000168386.19 protein_coding - - chr3:99828811-100114513:- chr3:100001919:- chr3:99547655-99833357:- chr3:99720763:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none RING-variant_domain(100%)|Cortactin-binding_protein-2(100%) RINGv(100%)|CortBP2(100%) 15 4 24 831 68 ENST00000274140.10 unknown downstream downstream duplicates(2),mismatches(1) GCGTGGACTGTGACCGCCGGATACTTGCT___GGATCTTCATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGTGCAAATCAACAAGTTAACAATAATCAGCATGCTCGAAATA...CAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCAGG___ATATTTCTGTTGATTGTCTTCATGTGTATAACATTACTGATTGCCAGCCTCATCTGCCTTACTTTACCAG|GCGACACCGTGTTGGGTCCCCGACCTTCTATGCTGAGCAGCTTAGGGGAGGGTAAGTTGCCCCACCACACCTGGTGCAGCATTCAACAAGACACCCATCCCTTTAATTATTCAGCCAAATGATTTATGAGGCTTGGCAGCAAAGACTTGGCAGACTGGTTTAAATTCAAAGGATCCAACCTACAGGTATTTTGAAAACCTTGGCCACATCTGCAATGTGTACTGTTTCTTTTGGGAGAGGAAAGAAGAGAAAGGGAGAAGATGTGACCTGCCTGACAGGAAGACAAG AHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLP|gdtvlgprpsmlsslgegklphhtwcsiqqdthpfnysak* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ TRUE hsa-mir-3921 chr3:99964314-99964398:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9271 MARCHF6::FILIP1L ENSG00000145495.17::ENSG00000168386.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1642 TRUE 646 MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10414502:+ chr5:10353807-10440500:+ chr5:10414614:+ FILIP1L ENSG00000168386.19 protein_coding - - chr3:99828811-100114513:- chr3:99931030:- chr3:99547655-99833357:- chr3:99649874:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none RING-variant_domain(100%)|Cortactin-binding_protein-2(100%) RINGv(100%)|CortBP2(100%) 4 10 9 831 28 ENST00000274140.10 ENST00000477258.2 downstream downstream duplicates(2) ACAATAATCAGCATGCTCGAAATAACAACGCTATTCCTGTGGTGGGAGAAGGCCTTCATGCAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCAGG___ATATTTCTGTTGATTGTCTTCATGTGTATAACATTACTGATTGCCAGCCTCATCTGCCTTACTTTACCAG|GCTTTAAAGAATGCGTTCCAGAGGCAGTGATACCGAGGGCTCAGCCCAAAAGAAATTTCCAAGACATACTAAAGGCCACAGTTTCCAAGGGCCTAAAAACATGAAGCATAGACAGCAAGACAAAGACTCCCCCAGTGAGTCGGATGTAATACTTCCGTGTCCCAAGGCAGAGAAGCCACACAGTGGTAATGGCCACCAAGC NNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLP|gfkecvpeavipraqpkrnfqdilkatvskglkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9272 MARCHF6::FILIP1L ENSG00000145495.17::ENSG00000168386.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1642 TRUE 646 MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10411537:+ chr5:10353807-10440500:+ chr5:10411649:+ FILIP1L ENSG00000168386.19 protein_coding - - chr3:99828811-100114513:- chr3:99931030:- chr3:99547655-99833357:- chr3:99649874:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none RING-variant_domain(100%)|Cortactin-binding_protein-2(100%) RINGv(100%)|CortBP2(100%) 1 2 6 980 28 ENST00000274140.10 ENST00000477258.2 downstream downstream none CTGGTGCGAGCGTGGACTGTGACCGCCGGATACTTGCT___GGATCTTCATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGTGCAAATCAACAAGTTAACAATAATCAGCATGCTCGAAATAACAACGCTATTCCTGTGGTGGGAGAAGGCCTTCATGCAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCAGG|GCTTTAAAGAATGCGTTCCAGAGGCAGTGATACCGAGGGCTCAGCCCAAAAGAAATTTCCAAGACATACTAAAGGCCACAGTTTCCAAGGGCCTAAAAACATGAAGCATAGACAGCAAGACAAAGACTCCCCCAGTGAGTCGGATGTAATACTTCCGTGTCCCAAGGCAGAGAAGCCACACAGTGGTAATGGCCACCAAGCAGAAGACCTCTCAAGAGAT LVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLR|alknafqrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9273 MARCHF6::FILIP1L ENSG00000145495.17::ENSG00000168386.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1642 TRUE 646 MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10410276:+ chr5:10353807-10440500:+ chr5:10410388:+ FILIP1L ENSG00000168386.19 protein_coding - - chr3:99828811-100114513:- chr3:99931030:- chr3:99547655-99833357:- chr3:99649874:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none RING-variant_domain(100%)|Cortactin-binding_protein-2(100%) RINGv(100%)|CortBP2(100%) 1 1 2 1204 28 ENST00000274140.10 ENST00000477258.2 downstream downstream none GGATATCTGTTCCTTG___GAAATGTTTGATGCTACTCTGAAAGATCGAGAACTGAGCTTTCAGTCGGCTCCAGGTACTACCATGTTTCTGCATTGGCTAGTGG...CATTGTCCTCCTGATGCTTTGGCTTCCTATACGTATAATTAAGAGTGTGCTGCCTAATTTTCTTCCATACAATGTCATGCTCTACAG___TGATGCTCCAGTGA...TCTGCTTCAGGTTGTCTTGCCAGCATTACTCGAACAGGGACACACGAGGCAGTGGCTGAAGGGGCTGGTGCGAGCGTGGACTGTGACCGCCGGATACTTGCT|GCTTTAAAGAATGCGTTCCAGAGGCAGTGATACCGAGGGCTCAGCCCAAAAGAAATTTCCAAGACATACTAAAGGCCACAGTTTCCAAGGGCCTAAAAACATGAAGCATAGACAGCAAGACAAAGACTCCCCCAGTGAGTCGGATGTAATACTTCCGTGTCCCAAGGCAGAGAAGCCAC LLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLl|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9275 ATAD3B::LINC02811 ENSG00000160072.20::ENSG00000284678.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATAD3B ENSG00000160072.20 protein_coding + + chr1:1471765-1497848:+ chr1:1479108:+ chr1:1407145-1433228:+ chr1:1414488:+ LINC02811 ENSG00000284678.1 lncRNA - - chr1:39801414-39817460:- chr1:39801484:- chr1:40267086-40283132:- chr1:40267156:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none ATPase_family_AAA_domain-containing_protein_3__N-terminal(43%)| DUF3523(46%)| 7 22 8 350 66 ENST00000673477.1 ENST00000641026.1 downstream downstream duplicates(2),mismappers(2),mismatches(1) CCTCGGAACGGCCTTGCACAAACGCCTAAGACCTGTAAGGTCCCTCACTGCTGAGCCGGACGGGAGGTCCCCGCGCCTCCCCACGTTTGTGTGAGGCTGATGGCGCGTCGGAGTCCCCGGCGCTCCGCCCAGTCGGCCCAGACTGCAGCTCCCGGCTGAGATGTGTCTTTGCCGCCCTCTTCTCCCCCAGAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAG|ATGGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACCGCAACCTTCGCCTCCCAGGTTCAAGTGATCTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGATGTGCACTACCATGCCCGGCTAATTTTTGTATTTTTA lgtalhkrlrpvrsltaepdgrsprlptfv*g*wrvgvpgappsrprlqlpaemclcrpllpqRAQYQDKLARQRYEDQLKQQ|meshsvaqagvqwrdlgspqpspprfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9276 LINC01194::ENSG00000256226 ENSG00000248131.6::ENSG00000256226.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 939 FALSE NA FALSE NA LINC01194 ENSG00000248131.6 lncRNA + + chr5:12574830-12804363:+ chr5:12575052:+ chr5:12574942-12804475:+ chr5:12575164:+ ENSG00000256226 ENSG00000256226.1 lncRNA - - chr12:27105151-27161393:- chr12:27105258:- chr12:27258084-27314326:- chr12:27258191:- chr5:12585994,chr5:12585993 chr12:27151277,chr12:27151278 NA NA chr5:12586106,chr5:12586105 chr12:27304210,chr12:27304211 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 17 8 11 226 33 ENST00000505196.1 ENST00000538920.1 downstream downstream duplicates(3),mismatches(4) ACCGCCTTGCAAGCTGAGGGAGCCGGCTCCGGCCTCTGCCAGCCCAGGAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGACTCCTCAAGTGCCACCAAAGTGGGAGCCCAGGCAGAGGAGGCGCCGAGAGCGAGCGAGGGCTGCCTGCCAGCACGCTGTCACGTCTCAGCAATAGACTGCTCTTGAG|GCCTACCAACCTAATGTATGCAGGCTACATGGACTGCTTCCTAGATGTAAACAGTTCTGGGATATGTATACCTATAGGAAGACAGGAGTGAGCAACAGCTACTCATAGTTCTGAAGAAGAAAAGAATAACAAATTCCTATACACAAGCACCTTCTAAAGGAATGTTTTATAAATCGTGGGTCACAACTGCTAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9277 MARCHF6::CMSS1 ENSG00000145495.17::ENSG00000184220.12 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10414502:+ chr5:10353807-10440500:+ chr5:10414614:+ CMSS1 ENSG00000184220.12 protein_coding + - chr3:99817837-100181732:+ chr3:100001919:- chr3:99536681-99900576:+ chr3:99720763:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RING-variant_domain(100%)| RINGv(100%)| 15 4 15 831 68 ENST00000274140.10 unknown downstream downstream duplicates(2),mismatches(1) GCGTGGACTGTGACCGCCGGATACTTGCT___GGATCTTCATTCTTATTTATTGGGAGACCAGGAAGAAAATGAAAACAGTGCAAATCAACAAGTTAACAATAATCAGCATGCTCGAAATA...CAGCCCACCAAGCCATACTCCAGCAGGGAGGGCCTGTTGGCTTTCAGCCTTACCGCCGACCTTTAAATTTTCCACTCAGG___ATATTTCTGTTGATTGTCTTCATGTGTATAACATTACTGATTGCCAGCCTCATCTGCCTTACTTTACCAG|GCGACACCGTGTTGGGTCCCCGACCTTCTATGCTGAGCAGCTTAGGGGAGGGTAAGTTGCCCCACCACACCTGGTGCAGCATTCAACAAGACACCCATCCCTTTAATTATTCAGCCAAATGATTTATGAGGCTTGGCAGCAAAGACTTGGCAGACTGGTTTAAATTCAAAGGATCCAACCTACAGGTATTTTGAAAACCTTGGCCACATCTGCAATGTGTACTGTTTCTTTTGGGAGAGGAAAGAAGAGAAAGGGAGAAGATGTGACCTGCCTGACAGGAAGACAAG AHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLP|gdtvlgprpsmlsslgegklphhtwcsiqqdthpfnysak* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9278 LEPROT::KIF3C ENSG00000213625.9::ENSG00000084731.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 940 TRUE 1643 TRUE 647 LEPROT ENSG00000213625.9 protein_coding + + chr1:65420587-65436007:+ chr1:65425378:+ chr1:65886270-65901690:+ chr1:65891061:+ KIF3C ENSG00000084731.15 protein_coding - - chr2:25926598-25982749:- chr2:25930063:- chr2:26149467-26205618:- chr2:26152932:- chr1:65427516,chr1:65427515 chr2:25940547,chr2:25940546 NA NA chr1:65893199,chr1:65893198 chr2:26163416,chr2:26163415 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Vacuolar_protein_sorting_55_(20%)| Vps55(1%)| 4 23 5 199 176 ENST00000371065.9 ENST00000264712.8 downstream downstream low_entropy(3),mismatches(1) GCCGGAAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTAAAG___CTCTCGTGGCATTATCCTTCAGTGGGGCTATTGGACTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGG|CAGTAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTACAAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTACAGG___GCTGAAAACATAATGTTTCTGGAGTTGGATGTGTCCCCTCCAGCTGTCTTTGAGATGGAATTCTCTCACGACCAAGAACAAGACCCTCGTGCGCTACACATGGAGAGGCTCATGCGAT MAGVKALVALSFSGAIGLTFLMLGCALEDYg|SSSQMKKRPTSAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAVFEMEFSHDQEQDPRALHMERLMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9279 LEPROT::KIF3C ENSG00000213625.9::ENSG00000084731.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1643 TRUE 647 LEPROT ENSG00000213625.9 protein_coding + + chr1:65420587-65436007:+ chr1:65425378:+ chr1:65886270-65901690:+ chr1:65891061:+ KIF3C ENSG00000084731.15 protein_coding - - chr2:25926598-25982749:- chr2:25930060:- chr2:26149467-26205618:- chr2:26152929:- chr1:65427516,chr1:65427515 chr2:25940547,chr2:25940546 NA NA chr1:65893199,chr1:65893198 chr2:26163416,chr2:26163415 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Vacuolar_protein_sorting_55_(20%)| Vps55(1%)| 0 2 4 199 172 ENST00000475108.5 ENST00000264712.8 downstream downstream mismatches(1) CTTGGGCAGGCTGCCCGGGCCGTGGCAGGAAGCCGGAAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTAAAG___CTCTCGTGGCATTATCCTTCAGTGGGGCTATTGGACTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGG|TAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTACAAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTACAGG___GCTGAAAACATAATGTTTCTGGAGTTGGATGTGTCCCCTCCAGCTGTCTTTGAGATGGAATTCTCTCACGACCAAGAACAAGACCCTCGTGCGCTACACATGGAGAGGCTCATGCGAT...GAAAGTCCAGATCCTG___GTGCCAGAGTCCTCAGCGGCCTCCACCTTCCACCACACATGCCTCCCTGGCCTCTGCTTCTCTGCGCCCTGCAACAGTGGCGGAC MAGVKALVALSFSGAIGLTFLMLGCALEDYg|SSQMKKRPTSAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAVFEMEFSHDQEQDPRALHMERLMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9280 LEPR::KIF3C ENSG00000116678.20::ENSG00000084731.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1644 TRUE 648 LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65425378:+ chr1:65886335-66107242:+ chr1:65891061:+ KIF3C ENSG00000084731.15 protein_coding - - chr2:25926598-25982749:- chr2:25930063:- chr2:26149467-26205618:- chr2:26152932:- chr1:65427516,chr1:65427515 chr2:25940547,chr2:25940546 NA NA chr1:65893199,chr1:65893198 chr2:26163416,chr2:26163415 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none Vps55(1%)| 3 23 5 199 176 ENST00000349533.11 ENST00000264712.8 downstream downstream low_entropy(3),mismatches(1) AGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTAAAG___CTCTCGTGGCATTATCCTTCAGTGGGGCTATTGGACTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGG|CAGTAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTACAAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTACAGG___GCTGAAAACATAATGTTTCTGGAGTTGGATGTGTCCCCTCCAGCTGTCTTTGAGATGGAATTCTCTCACGACCAAGAACAAGACCCTCGTGCGCTACACATGGAGAGGCTCATGCGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9281 LEPR::KIF3C ENSG00000116678.20::ENSG00000084731.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1644 TRUE 648 LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65425378:+ chr1:65886335-66107242:+ chr1:65891061:+ KIF3C ENSG00000084731.15 protein_coding - - chr2:25926598-25982749:- chr2:25930060:- chr2:26149467-26205618:- chr2:26152929:- chr1:65427516,chr1:65427515 chr2:25940547,chr2:25940546 NA NA chr1:65893199,chr1:65893198 chr2:26163416,chr2:26163415 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none Vps55(1%)| 0 2 4 199 172 ENST00000371060.7 ENST00000264712.8 downstream downstream mismatches(1) CTTGGGCAGGCTGCCCGGGCCGTGGCAGGAAGCCGGAAGCAGCCGCGGCCCCAGTTCGGGAGACATGGCGGGCGTTAAAG___CTCTCGTGGCATTATCCTTCAGTGGGGCTATTGGACTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGG|TAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTACAAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTACAGG___GCTGAAAACATAATGTTTCTGGAGTTGGATGTGTCCCCTCCAGCTGTCTTTGAGATGGAATTCTCTCACGACCAAGAACAAGACCCTCGTGCGCTACACATGGAGAGGCTCATGCGAT...GAAAGTCCAGATCCTG___GTGCCAGAGTCCTCAGCGGCCTCCACCTTCCACCACACATGCCTCCCTGGCCTCTGCTTCTCTGCGCCCTGCAACAGTGGCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9282 LTBP1::NEGR1 ENSG00000049323.16::ENSG00000172260.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 941 TRUE 1645 TRUE 649 LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33134960:+ chr2:33172020-33624576:+ chr2:33360027:+ NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:71776297:- chr1:71861626-72748222:- chr1:72241980:- chr2:33155670 chr1:71858257 NA NA chr2:33380737 chr1:72323940 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Immunoglobulin_domain(100%) |I-set(34%),Ig_2(100%),Ig_3(100%),ig(100%) 5 7 18 19 169 ENST00000404816.7 ENST00000357731.10 downstream downstream duplicates(1),low_entropy(1) AGGGGATTTCAGGAGAGCAGTCCACTGAAGGTTCTTTCCCTTTAAGATATGTGCAGGATCAAGTTGCGGCACCTTTTCAGC___TGAGTAACCACACTGGCCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAGCTGTCAGAACAGCTGTGAGAAGGGGAACACCACCACTCTCATTAGTGAGAATGGTCATGCTGCCGACACCCTGACGGCCACGAACTTCCGAGTGG|TTCCTCCTAAGATATATGACATCTCAAATGATATGACCGTCAATGAAGGAACCAACGTCACTCTTACTTGTTTGGCCACTGGGAAACCAGAGCCTTCCATTTCTTGGCGACACATCTCCCCATCAG___CAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAATTACAAGGGACCAGGCTGGGGAATATGAATG GISGEQSTEGSFPLRYVQDQVAAPFQLSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRV|vPPKIYDISNDMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9283 LTBP1::NEGR1 ENSG00000049323.16::ENSG00000172260.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 942 TRUE 1645 TRUE 649 LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33110751:+ chr2:33172020-33624576:+ chr2:33335818:+ NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:71776297:- chr1:71861626-72748222:- chr1:72241980:- chr2:33155670 chr1:71858257 NA NA chr2:33380737 chr1:72323940 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Immunoglobulin_domain(100%) |I-set(34%),Ig_2(100%),Ig_3(100%),ig(100%) 2 3 3 29 169 ENST00000404816.7 ENST00000357731.10 downstream downstream low_entropy(1) CCAAGAGTCAGCCCTGTGGCCCAGATGACCTTAACCCTCAAGCCGAAGCCTTCAGTGGGACTCCCCCAGCAGATACATTCTCA___AGTGACTCCTCTTTCTTCCCAGAGTGTGGTGATTCACCATGGCCAGACCCAGGAATACGTGCTCAAGCCCAAGTACTTTCCAGCCCAGAAGGGGATTTCAGGAGAGCAGTCCACTGAAGGTTCTTTCCCTTTAAGATATGTGCAGGATCAAGTTGCGGCACCTTTTCAGC|TTCCTCCTAAGATATATGACATCTCAAATGATATGACCGTCAATGAAGGAACCAACGTCACTCTTACTTGTTTGGCCACTGGGAAACCAGAGCCTTCCATTTCTTGGCGACACATCTCCCCATCAG___CAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAATTACAAGGGACCAGGCTGGGG PRVSPVAQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQSTEGSFPLRYVQDQVAAPFQ|lPPKIYDISNDMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9284 DTD1::RALGAPA2 ENSG00000125821.13::ENSG00000188559.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 943 TRUE 1646 TRUE 650 DTD1 ENSG00000125821.13 protein_coding + + chr20:18587942-18766644:+ chr20:18593821:+ chr20:18568586-18747288:+ chr20:18574465:+ RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20412148:- chr20:20370174-20693287:- chr20:20392792:- chr20:18595660,chr20:18595658 chr20:20432312,chr20:20432311 NA NA chr20:18576304,chr20:18576302 chr20:20412956,chr20:20412955 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none D-Tyr-tRNA(Tyr)_deacylase(30%)| Tyr_Deacylase(43%)| 12 9 5 875 274 ENST00000647441.1 ENST00000202677.12 downstream downstream duplicates(2),mismatches(1) CCGGACGCAGCGCGGCGCCGCCCCACTCGCCCCAGCCGCCGCCATGAAGGCCGTGGTGCAGCGCGTCACCCGGGCCAGCGTCACAG___TTGGAGGAGAGCAGATTAGTGCCATTGGAAGGGGCATATGTGTGTTGCTGGGTATTTCCCTGGAGGATACGCAGAAGGAACTGGAACACAT|CTATGAAGAGCGAGCTCTGTATCTCGAAGCAATAATTCAGAACCACCGCGAAGTAATGACATTCGAGGATTTCGCAGCCCAAGTCTTTTCTCCCTCTCCCAGCTACTCCCTCAGCGGAACGG___ATTAAAACACGTAAAGGTCTCATTTCAATATTTGAGCAAG___GGGCCCTGGCCTCCAGTCTGAGTGCTGACCTCGAAGAGCCCCTGAGTGAGGAGGAGACAGAACACCCTCTCCTGCCTCTGCCCCGAGCCACTAAACCCAGAATCTCCAGGAAATTTCGTTGCTGTACTAGTGCCCTCAGC MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHi|YEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 18608877|18608877 FALSE|FALSE 20527476|20517428 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9285 DTD1::RALGAPA2 ENSG00000125821.13::ENSG00000188559.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1646 TRUE 650 DTD1 ENSG00000125821.13 protein_coding + + chr20:18587942-18766644:+ chr20:18593821:+ chr20:18568586-18747288:+ chr20:18574465:+ RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20393253:- chr20:20370174-20693287:- chr20:20373897:- chr20:18595660,chr20:18595658 chr20:20432312,chr20:20432311 NA NA chr20:18576304,chr20:18576302 chr20:20412956,chr20:20412955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none D-Tyr-tRNA(Tyr)_deacylase(30%)| Tyr_Deacylase(43%)| 2 2 3 875 319 ENST00000647441.1 ENST00000430436.5 downstream downstream mismatches(1) CGAGGCCGGACGCAGCGCGGCGCCGCCCCACTCGCCCCAGCCGCCGCCATGAAGGCCGTGGTGCAGCGCGTCACCCGGGCCAGCGTCACAG___TTGGAGGAGAGCAGATTAGTGCCATTGGAAGGGGCATATGTGTGTTGCTGGGTATTTCCCTGGAGGATACGCAGAAGGAACTGGAACACAT|GGGCCCTGGCCTCCAGTCTGAGTGCTGACCTCGAAGAGCCCCTGAGTGAGGAGGAGACAGAAC?CCCTCTCCTGCCTCTGCCCCGAGCCACTAAACCCAGAATCTCCAGGAAATTTCGTTGCTGTACTAGTGCCCTCAGCAGGTCTTCCCATTAGTGGACTTCTGAAGCCCATGGTGAATCCCACTACCGTGTCTCAGATGGGACTCAAACTAGGCTGTATCATCTTGTCCTGAAACCTCACAAACCTTGG...AAAGAAAAAGTCACCAAAAACCAGAGATGAACCCACTGACACGTGGGCACTGGTGTGGCTGCTCTGGGCAGATGACAGCAGGAAAAGATTCTGCGCTTTCA MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHm|gpglqsec* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 18608877|18608877 FALSE|FALSE 20527476|20517428 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9286 ENSG00000284776::RALGAPA2 ENSG00000284776.1::ENSG00000188559.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1647 TRUE 651 ENSG00000284776 ENSG00000284776.1 protein_coding + + chr20:18567453-18744216:+ chr20:18593821:+ chr20:18548097-18724860:+ chr20:18574465:+ RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20412148:- chr20:20370174-20693287:- chr20:20392792:- chr20:18595660,chr20:18595658 chr20:20432312,chr20:20432311 NA NA chr20:18576304,chr20:18576302 chr20:20412956,chr20:20412955 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none Tyr_Deacylase(43%)| 13 9 4 875 274 ENST00000618693.4 ENST00000202677.12 downstream downstream duplicates(2),mismatches(1) CCGGACGCAGCGCGGCGCCGCCCCACTCGCCCCAGCCGCCGCCATGAAGGCCGTGGTGCAGCGCGTCACCCGGGCCAGCGTCACAG___TTGGAGGAGAGCAGATTAGTGCCATTGGAAGGGGCATATGTGTGTTGCTGGGTATTTCCCTGGAGGATACGCAGAAGGAACTGGAACACAT|CTATGAAGAGCGAGCTCTGTATCTCGAAGCAATAATTCAGAACCACCGCGAAGTAATGACATTCGAGGATTTCGCAGCCCAAGTCTTTTCTCCCTCTCCCAGCTACTCCCTCAGCGGAACGG___ATTAAAACACGTAAAGGTCTCATTTCAATATTTGAGCAAG___GGGCCCTGGCCTCCAGTCTGAGTGCTG...CCCCTGAGTGAGGAGGAGACAGAACACCCTCTCCTGCCTCTGCCCCGAGCCACTAAACCCAGAATCTCCAGGAAATTTCGTTGCTGTACTAGTGCCCTCAGC rtqrgaaplapaaamkavvqrvtrasvtVGGEQISAIGRGICVLLGISLEDTQKELEHi|YEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9287 ENSG00000284776::RALGAPA2 ENSG00000284776.1::ENSG00000188559.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1647 TRUE 651 ENSG00000284776 ENSG00000284776.1 protein_coding + + chr20:18567453-18744216:+ chr20:18593821:+ chr20:18548097-18724860:+ chr20:18574465:+ RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20393253:- chr20:20370174-20693287:- chr20:20373897:- chr20:18595660,chr20:18595658 chr20:20432312,chr20:20432311 NA NA chr20:18576304,chr20:18576302 chr20:20412956,chr20:20412955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none Tyr_Deacylase(43%)| 2 2 3 875 319 ENST00000618693.4 ENST00000430436.5 downstream downstream mismatches(1) CGAGGCCGGACGCAGCGCGGCGCCGCCCCACTCGCCCCAGCCGCCGCCATGAAGGCCGTGGTGCAGCGCGTCACCCGGGCCAGCGTCACAG___TTGGAGGAGAGCAGATTAGTGCCATTGGAAGGGGCATATGTGTGTTGCTGGGTATTTCCCTGGAGGATACGCAGAAGGAACTGGAACACAT|GGGCCCTGGCCTCCAGTCTGAGTGCTGACCTCGAAGAGCCCCTGAGTGAGGAGGAGACAGAAC?CCCTCTCCTGCCTCTGCCCCGAGCCACTAAACCCAGAATCTCCAGGAAATTTCGTTGCTGTACTAGTGCCCTCAGCAGGTCTTCCCATTAGTGGACTTCTGAAGCCCATGGTGAATCCCACTACCGTGTCTCAGATGGGACTCAAACTAGGCTGTATCATCTTGTCCTGAAACCTCACAAACCTTGG...AAAGAAAAAGTCACCAAAAACCAGAGATGAACCCACTGACACGTGGGCACTGGTGTGGCTGCTCTGGGCAGATGACAGCAGGAAAAGATTCTGCGCTTTCA rgrtqrgaaplapaaamkavvqrvtrasvtVGGEQISAIGRGICVLLGISLEDTQKELEHm|gpglqsec* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9288 ZMYND8::NCOA3 ENSG00000101040.20::ENSG00000124151.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47347856:- chr20:45837859-45985633:- chr20:45976600:- NCOA3 ENSG00000124151.19 protein_coding + - chr20:47501887-47656877:+ chr20:47601249:- chr20:46130631-46285621:+ chr20:46229993:- chr20:47335172,chr20:47335175 chr20:47602269,chr20:47602269 NA NA chr20:45963916,chr20:45963919 chr20:46231013,chr20:46231013 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 15 4 422 31 ENST00000446994.6 unknown upstream downstream mismatches(1) GTTAACAATGCATCCACAGAG___CTTGGCTGAAGAGGAAATAAAAACAGAACAGGAGGTGGTAGAGGGCATGGATATCTCTACTCGCTCCAAAG|GTTTGGACTAAAGAGTGGGTTGTTACAAAGTGAGACCACCTCTTGTGTTGGTAACTTTGCACATGCCTGCTTCCCCTTCCTCTTCTCCACCGTGGTGTTACGACATGGCACAAGGCCCTCACCAGAAGCTGACCAGATCTCAGACTTCCCAGCTTCCAGAATCATGTGCTAAATAAA MDISTRSK|gld* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9289 RERE::SPSB1 ENSG00000142599.20::ENSG00000171621.14 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 944 FALSE NA FALSE NA RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8848017:- chr1:8412457-8908980:- chr1:8908076:- SPSB1 ENSG00000171621.14 protein_coding + + chr1:9292894-9369532:+ chr1:9355743:+ chr1:9352953-9429591:+ chr1:9415802:+ chr1:8832026,chr1:8832028 chr1:9345648,chr1:9345646 NA NA chr1:8892085,chr1:8892087 chr1:9405707,chr1:9405705 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |SOCS_box(100%),SPRY_domain(100%) |SOCS_box(100%),SPRY(100%) 5 7 8 15 33 ENST00000656437.1 ENST00000328089.11 upstream upstream duplicates(1),mismappers(1) GGAAGAGCAGCTGCTGTGCCTCCCTGCCTCTCTGCTTGGCCACAGCTCCCCTCCCTCTCTGGCTGCCCTAGCACTGAACTCTGATCTTCAGCAGTGAGACCTAGTACCTGCCTCCGCCTCACTGGGAAGCAAAGCtGCAGAGCAGGTGCAGCTGTGTGTGGCATGGCCAGCCACAAGCCAGAAAAACCAGCAAACCAGGGCCGGGAACAATACTTCCTGGGACCAGCCCCGGGGACCACTTTGGAAATGAGCATGGCAGAGGCAGCCACAGG|GCAATACTGAACACTGCGCAGCTTGCAGAGGTCTCCTGGCAGCCCTCATTAGGAATTCTGTCTGGCCCCGATCAGAATACTGGAGACGAGACCACGAGATTGATGAGTTTGCCTTGGGAGTCGGTAAGAAGGTGAAGCCAGGGGCGAACATGGGTCAGAAGGTCACTGGAGGGATCAAGACTGTGGACATGAGGGACCCCACGTACAGGCCCCTGAAGCAGGAGCTCCAGGGTCTGGATTACTGCAAGCCCACCCGGCTGGATCTGCTACTGGAC...TCCTATGATGTCCAGCTGCTGCATTCATGGAACAACAACGACCGATCGCTCAATGTCTTTGTGAAGGAGGACGACAAGCTCATCTTTCACCGGCATCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9293 LINC02438::PCDH7 ENSG00000248238.2::ENSG00000169851.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02438 ENSG00000248238.2 lncRNA - - chr4:19172335-19456994:- chr4:19333664:- chr4:19173958-19458617:- chr4:19335287:- PCDH7 ENSG00000169851.16 protein_coding + - chr4:30720369-31146805:+ chr4:30923657:- chr4:30721991-31148427:+ chr4:30925279:- chr4:19282384,chr4:19282395 chr4:30956459,chr4:30956467 NA NA chr4:19284007,chr4:19284018 chr4:30958081,chr4:30958089 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 4 9 4 26 12 ENST00000505347.1 unknown upstream downstream none CTCTTCAAGATGAGACAGGTGGAGCAGAGCTGCCACCAACCTCCGGTGATTTCCACACAAT___GTGTCCTAGAAGAAGAGACCCTACACTGGGCTTGTGACCAGCGGAAACTGAATCAATGCTGGAGACACATTCTAACAGTCGAATGGGCAGCTCACAGGAG|GGACCTGTGGCATTCTACAGATTTGGAACTTTAAAATGGTGGATCTCATTCTACATTATTAGATTCCGGTG___ACTGACCTTCGCGAGTCTACTTATTACGGCTCACTAGCGTGATTATGTGTGTGGATGTTGTGTTTGCCCCTACCATTTTCCATATGCTCTGCCTCACCAACACTGCCATCCGGCGTGGTCCTTTCATAGTTGTCCTCTGGGAGTGGAAGCGCACCCAGTCTTGGCCCTGATGAACTCTTACTGCTTGGTGTTTCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9294 ATP8A2::RNF6 ENSG00000132932.19::ENSG00000127870.17 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP8A2 ENSG00000132932.19 protein_coding + + chr13:25371974-26025851:+ chr13:25469121:+ chr13:25946112-26599989:+ chr13:26043259:+ RNF6 ENSG00000127870.17 protein_coding - + chr13:26132115-26222314:- chr13:26157672:+ chr13:26706253-26796451:- chr13:26731810:+ chr13:25481344 chr13:26152472 NA NA chr13:26055482 chr13:26726610 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Phospholipid-translocating_ATPase_N-terminal(26%)| PhoLip_ATPase_N(0%)| 12 2 2 192 4 ENST00000684424.1 unknown downstream upstream duplicates(2),low_entropy(2) CCGCCCGCGGCCCGCGCTCGCAGCCTCCCGCCTGGCGGTTGACTTCTTTGTGTCGTATTCTCTGCCTGCGCCCTGTCTCTGCAGGACCTGTTCGTTCTTCTTTGGGCTATAAGAAGGCAGAGGATGAGATGTCCCGGGCCACGTCTGTTGGAGACCAGCTGGAGGCACCCGCCCGCACCATTTACCTCAACCAACCGCATCTCAACAAATTCCGCGACAACCAGATCAG|GTTGACAAAGATTAAAAGGATTGACCAATTCCAGCATCAGTGAGGACATGAAGAAATGTGAATCCTCAAGCTGACAGCATAATCTTTCTGGAAGATTATTTGACACTTGTATAAAAGTATAAACAGAGTGTGTCCTTTGGTCTAGAAACTTTAC MSRATSVGDQLEAPARTIYLNQPHLNKFRDNQIr|ltkikridqfqhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9295 UBAC2::ENSG00000285454 ENSG00000134882.16::ENSG00000285454.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBAC2 ENSG00000134882.16 protein_coding + + chr13:99200774-99386504:+ chr13:99318069:+ chr13:99853028-100038758:+ chr13:99970323:+ ENSG00000285454 ENSG00000285454.1 lncRNA + - chr4:42151028-42268110:+ chr4:42160292:- chr4:42153045-42270127:+ chr4:42162309:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none 7TM_GPCR_Srx(100%),7tm_1(100%)| 4 3 6 371 17 ENST00000403766.8 unknown downstream downstream duplicates(2) AGAAAATTTGCA___TCCTTTTTGCTGGGTTCCTGGGTTTTGTCAGCCTTATTTGACTTTCTCCTCATTGAAGCTATGCAGTATTTCTTTGGCATCACTGCAGCTAGTAATTTGCCTTCTGGATT___CCTGGCAC...CAAGAGTCCAAGTGGCACAAATTCTGGGTCCGTTGTCCATCACAAACAAGACATTGATTTATATATTGGGACTGCAG___CTTTTCACCTCTGGTTCCTACATCTGGATTGTAGCCATAAGTGGACTT|CAGGACTGTGGGTCTTAATACCCGTGCCAGAGAGGGCCCCACTCTATACACTGGGAGAAGGAATGCTGACATCATGAAGCTTCTATAAAAACCCAAAAGGAACTGGGTTCCAAAGTCTTCTGGATAGCTGAGCACGTGGAGGTTCCTGGAGGGTGGCATGCCCAGGCAGGGCATGGAAGCCCTGAGCCTTTTCCCTCATATCTCACCCTACACGTTTCTTCATCTATgCCTTTTGGAATATCCTTTATAG RVQVAQILGPLSITNKTLIYILGLQLFTSGSYIWIVAISGL|qdcgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9296 ZFP69B::BEND5 ENSG00000187801.15::ENSG00000162373.13 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 947 FALSE NA FALSE NA ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40450175:+ chr1:40915774-40929390:+ chr1:40915847:+ BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48736452:- chr1:49193191-49242641:- chr1:49202124:- chr1:40450696,chr1:40450697 chr1:48740743,chr1:48740742 NA NA chr1:40916368,chr1:40916369 chr1:49206415,chr1:49206414 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |BEN_domain(100%) |BEN(100%),Peptidase_M14(32%) 1 5 6 37 92 ENST00000469416.1 ENST00000371833.4 downstream downstream duplicates(1),mismatches(1) CCCCGACTGCCCGCCGCAGCGCTACGTGGGAGCTTGGCCGCGCAGTGCCGGAACCCGGCTGCAGCGGTGGGAAGGCGGGGGCGTGCCGGCCCAGCGGGGAGAGG|GTCCATCTGGGAAGCGGGATTTGGGTTGATGAGGAGAAATGGCACCAGCTACAAGTAACCCAAGGAGATTCCAAGTACACGAAGAACTTGGCAGTTATGATTTGGGGAACAGATGTTCTGAAAAACAGAAGCGTCACAGGCGTCGCCACAAAAAAAAAGAAAGATGCAGTCCCTAAACCACCCCTCTCGCCTCACAAACTAAGCATCGTCAGAG___AGTGTTTGTATGACAGAATAGCACAAGAAACTGTGGATGAAACTGAAATTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9297 BEND5::ZFP69B ENSG00000162373.13::ENSG00000187801.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 948 TRUE 1649 TRUE 652 BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48758900:- chr1:49193191-49242641:- chr1:49224572:- ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:48740753,chr1:48740757 chr1:40450785,chr1:40450781 NA NA chr1:49206425,chr1:49206429 chr1:40916457,chr1:40916453 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) Peptidase_M14(63%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 2 2 2 114 60 ENST00000371833.4 ENST00000484445.5 upstream upstream none GACAGTCTAGAAGATGCTGTGGTGCCCCGGGCTCTGTATGAGGAGCTGCTGCGCAACTACCAGCAGCAACAGGAAGAGATGCGCCACCTCCAGCAGGAGCTGGAGCGGACTCGGAGGCAGCTGGTACAACAGGCCAAGAAGCTCAAGGAGTACGGGGCACTTGTGTCTGAAATGAAGGAGCTCCGTGACCTTAACCGGAGGCTCCAGGACGTGCTGCTCCTGaGGCTTGGCAGCG|GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG___GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG___ACTTGAAG DSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQLVQQAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGS|gTVNLQGRICGLHSGGVGAAGPCSPESVPGGDAGELWEPGLSGMSAFQTWRDFPVGERRRTMADGERYFRSSKFRLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9298 BEND5::ZFP69B ENSG00000162373.13::ENSG00000187801.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1649 TRUE 652 BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48742623:- chr1:49193191-49242641:- chr1:49208295:- ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:48740753,chr1:48740757 chr1:40450785,chr1:40450781 NA NA chr1:49206425,chr1:49206429 chr1:40916457,chr1:40916453 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) Peptidase_M14(66%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 2 62 60 ENST00000371833.4 ENST00000411995.6 upstream upstream none TGCGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAG|GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGGGTAAGGATGGGCTCCTCTTGAA...AGAGATATTTCAGGAGTTCCAAGTTCAG___ACTTGAAGAGCAAAACAAAAACCAAAGAGTCAGCCTTACAGAATGATATTTCGTGGGAAGAACTACATTGTGG APVMDKYILDNGK|ELLTFKDVSVDFTQEEWGQLAPAHRNLYREVMLENYGNLVSVgkdglll NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9299 BEND5::ZFP69B ENSG00000162373.13::ENSG00000187801.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1649 TRUE 652 BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48740754:- chr1:49193191-49242641:- chr1:49206426:- ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40450784:+ chr1:40915774-40929390:+ chr1:40916456:+ NA NA NA NA NA NA NA NA sense sense stop-codon intron 5'UTR inversion medium none |KRAB_box(100%),SCAN_domain(100%),Zinc_finger__C2H2_type(100%) Peptidase_M14(67%)|KRAB(100%),SCAN(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 2 3 7 11 65 ENST00000371833.4 ENST00000469416.1 upstream upstream mismappers(1),mismatches(2) CGCCTGTCATGGACAAGTATATCCTAGACAATGGCAAG___TCAGGCAGAGAGAGTTTTAAATGCAGAGGAAAGGAAGTGGACGCACTGGAAATGATGGCAGCTTCCCAGAACAGCATCTCCACATCCCAGAAGTAGCCCTCATTGTTCTTGGCTCTGCTGTCTTGTCTGACCCTTCCTT|GATACTGTATGTTCCCTGGGTTCCTGAGAGAGGACATTGAGGAGTAGGAGTCGGCGATTAAGGAGATCGGTACAATTGGGAAGCCTCCTGTCAGAGCTTCCAGCAATTTCCTCATCAGAGGTGGACAAGCCCTATGGGCTAAGACAGAGGGTCCTCAGAAAGGAGTGCGGACGCCGTCATGCTGCAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9304 NAA40::MARK2 ENSG00000110583.13::ENSG00000072518.23 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 951 FALSE NA FALSE NA NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63947003:+ chr11:63706431-63724791:+ chr11:63714475:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63902604:+ chr11:63606400-63678492:+ chr11:63670076:+ chr11:63947562,chr11:63947563 chr11:63902372,chr11:63902370 NA NA chr11:63715034,chr11:63715035 chr11:63669844,chr11:63669842 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Kinase_associated_domain_1(100%) |KA1(100%) 3 1 5 223 135 ENST00000377793.9 ENST00000377810.8 downstream upstream duplicates(1) GCCGTTGCCGCCTCCCTGCCGGCAAGTGTGTGAAGAAGAAGCTGAGCGTTGTCGCCGCCGCTATGGGG___AGAAAGTCAAGCAAAGCCAAGGAGAAGAAGCAGAAGCGGTTGGAGGAGCGAGCAGCCATGGATGCCGTTTGTGCCAAAGTGGACGCTGCCAACAGG___CTTGGAGACCCTCTGGAGGCTTTCCCAGTGTTCAAGAAATATGATAGAAACGG|CTGGTCCTGCCATTCCCACCTCTAATTCTTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAGGACCGGGAGTCAGGGCGGAAAGCCAGCAGCACAGCCAAGGTGCCTGCCAGCCCCCTGCCCGGTCTGGAGAGGAAGAAGACCACCCCAACCCCCTCCACG___AACAGCGTCCTCTC MGRKSSKAKEKKQKRLEERAAMDAVCAKVDAANRLGDPLEAFPVFKKYDRNg|wschshl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9309 KLHL29::ENSG00000291325 ENSG00000119771.15::ENSG00000291325.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1651 TRUE 653 KLHL29 ENSG00000119771.15 protein_coding + + chr2:23385179-23708611:+ chr2:23562481:+ chr2:23608050-23931481:+ chr2:23785351:+ ENSG00000291325 ENSG00000291325.1 lncRNA + + chr2:4284012-4630252:+ chr2:4438966:+ chr2:4331602-4677842:+ chr2:4486556:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 1 4 141 4 ENST00000486442.6 ENST00000707165.1 downstream upstream duplicates(1) GTCAACGGGACGCATGGGACCACCAGCATCTGCAGTGTCACCTCGGGGGCCGGTGGCGGCACAGCCAGCAGCCTCAGCGTCCGGCCCGGCCTCCTGCCGCTGCCCGTGGTGCCCTCCCGGCTGCCCACCCCGGCTACAGCTCCTGCTCCCTGCACCACCGGCAGCAGCGAGGCCATCACCAGCCTCGTGGCCAGCTCTGCGTCTGCGGTCACCACCAAG|GACACCTGGCTTGTACTTCAGGAGGGAATCCCACAGGCTCCAGATTAAATTTTCTTCAAATGTCTTCCCTTTCTCCAGCCATGGTCACAATGCCACTGACCACTGAGTGAAGACCTGTGAGTGTGAGTGGGGATGCATTATTTTTTTTGTCTGGCTAGAGCTCC...___AAGAAAAAGGAAAACAGCAGAGCTGATGGCCAATTGGAGGGTCTTCAAGTGTCCCAC VNGTHGTTSICSVTSGAGGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTK|dtwlvlqegipqapd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9310 KLHL29::ENSG00000291325 ENSG00000119771.15::ENSG00000291325.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1651 TRUE 653 KLHL29 ENSG00000119771.15 protein_coding + + chr2:23385179-23708611:+ chr2:23562481:+ chr2:23608050-23931481:+ chr2:23785351:+ ENSG00000291325 ENSG00000291325.1 lncRNA + + chr2:4284012-4630252:+ chr2:4450907:+ chr2:4331602-4677842:+ chr2:4498497:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 1 2 141 15 ENST00000486442.6 ENST00000707165.1 downstream upstream none CGCGAATGGAGCGTCAACGGGACGCATGGGACCACCAGCATCTGCAGTGTCACCTCGGGGGCCGGTGGCGGCACAGCCAGCAGCCTCAGCGTCCGGCCCGGCCTCCTGCCGCTGCCCGTGGTGCCCTCCCGGCTGCCCACCCCGGCTACAGCTCCTGCTCCCTGCACCACCGGCAGCAGCGAGGCCATCACCAGCCTCGTGGCCAGCTCTGCGTCTGCGGTCACCACCAAG|CCTTCTGCCATGTGAGGACCTGGCATTCTTCCTCTGTGGAGGACACAGCATTCAAGGCGCCATCTTGGAATCAGAATCACTAACCACATCAAAGCCTAATACTGGACTTCCCAACCTCCTAAACT___ATG REWSVNGTHGTTSICSVTSGAGGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTK|psam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9311 KLHL29::ENSG00000291325 ENSG00000119771.15::ENSG00000291325.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1651 TRUE 653 KLHL29 ENSG00000119771.15 protein_coding + + chr2:23385179-23708611:+ chr2:23562481:+ chr2:23608050-23931481:+ chr2:23785351:+ ENSG00000291325 ENSG00000291325.1 lncRNA + + chr2:4284012-4630252:+ chr2:4510045:+ chr2:4331602-4677842:+ chr2:4557635:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 1 0 141 8 ENST00000486442.6 ENST00000707165.1 downstream upstream duplicates(1) CGGCACCATAGCCGCTTCGAAAGAGATTACCGGGTGGGCTGGGACCGCCGCGAATGGAGCGTCAACGGGACGCATGGGACCAaCAGCATCTGCAGTGTCAC...CCCGGCTACAGCTCCTGCTCCCTGCACCACCGGCAGCAGCGAGGCCATCACCAGCCTCGTGGCCAGCTCTGCGTCTGCGGTCACCACCAAG|ATGCTGATTGTAAGGTCTACAGCGATGTGACTAGAACCGTAGTCCACAGACTTCTGCTACGGCATCCCGCAACTACGATCGTCCCTCTGCCGAGAGATCAGCCAGCTAGCCAAGT___AAGAAAAAGGAAAAC PATAPAPCTTGSSEAITSLVASSASAVTTK|mlivrstam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9318 NUTM2A-AS1::LINC00863 ENSG00000223482.10::ENSG00000224914.4 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUTM2A-AS1 ENSG00000223482.10 lncRNA - - chr10:87189773-87342612:- chr10:87246115:- chr10:88949530-89102369:- chr10:89005872:- LINC00863 ENSG00000224914.4 lncRNA + - chr10:87341685-87357882:+ chr10:87343362:- chr10:89101442-89117639:+ chr10:89103119:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 0 2 3 108 53 ENST00000671543.1 unknown upstream downstream none TTTTGAG___GCTGTTGTACAGTGGCCTGATTATAGCTCACTGTAGCCTCGAAATTCTGGGCCGAAATGATCCGCCTGCCTCAGCCTCCAAAGTAGCTGAGACTACAG|TGAAGCCTTTGCACTGCTAGAGCTGAAGAATGTGATCAATCGGCTTGTTGAATAATCCCGCACAGTAGGTATTCCGCTGAAGCCAACTCTAGCTGGGGGCTCGAGAGCGAAAGACACAGATGGGGCCCTGCCGCCCCTCGAAGAGTCGGATGGGGGCGCCCGTCCCCGGTGCATCAAGAGGCTGGCCCCGCCAGGGGCGAGCGGCTGGCACCGAACCCCGCGCACCTCGCCGCGGGCGGGGCTGGGCCGTAGTCGGCTCGATTTAAGGCTGGTATCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9319 EFHD2::DAB1 ENSG00000142634.13::ENSG00000173406.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1653 TRUE 654 EFHD2 ENSG00000142634.13 protein_coding + + chr1:15409888-15430339:+ chr1:15410279:+ chr1:15736384-15756835:+ chr1:15736775:+ DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:57759961:- chr1:57460451-59012406:- chr1:58225633:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion high none EF-hand_domain_pair(12%)|Phosphotyrosine_interaction_domain_(PTB/PID)(100%) EF-hand_5(0%),EF-hand_6(0%),EF-hand_7(0%)|PID(100%) 0 2 3 577 4 ENST00000375980.9 unknown downstream downstream duplicates(2) GAGGCGCTGGGCAGCGCGGACTGCGAGCTGAGCGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGATCAAGGACATGGAGAAGATGTTCAAGCA|AGCATACAAAGGTCCCTGTATACGTTCCAATGCGTTGCTCTTGTATGCAGTCATTCAGAAACCCAGGAATCATCATTCACATTTCCCCTCTATAATTGTTACCTGCCTGCACAATTGCGT___ATAAACTGAGTCTGGAGGCTGA...CTGAAAGACCCCATCTCTACAATTTTTCTTTTAATTAACTGTGCATGGTGACATGTtCCTGGAGTCCTAGCTACTCAGGAGGCTGAGGCAGAAGGATCG EALGSADCELSAKLLRRADLNQGIGEPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFKq|aykgpcirsnalllyaviqkprnhhshfpsiivtclhncv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9320 EFHD2::DAB1 ENSG00000142634.13::ENSG00000173406.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1653 TRUE 654 EFHD2 ENSG00000142634.13 protein_coding + + chr1:15409888-15430339:+ chr1:15410279:+ chr1:15736384-15756835:+ chr1:15736775:+ DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:57649665:- chr1:57460451-59012406:- chr1:58115337:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none EF-hand_domain_pair(12%)|Phosphotyrosine_interaction_domain_(PTB/PID)(100%) EF-hand_5(0%),EF-hand_6(0%),EF-hand_7(0%)|PID(100%) 0 1 1 577 3 ENST00000375980.9 ENST00000485760.5 downstream downstream duplicates(1) CGCCAAGCTGCTGCGGCGCGCAGACCTCAACCAGGGCATCGGCGAGCCCCAGTCGCCCAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCT...AAGCAGATCAAGGACATGGAGAAGATGTTCAAGCA|CACTCAGCAAGACATGGTGGTGAGCCCTGACTCTCAGTCTTCATGATTGAAGAACTCTTTTGTACAACACAAAG___AGATGGAGCCTCACCATGTTGCCC KQIKDMEKMFKh|tqqdmvvspdsqss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9326 ALPL::CFAP61 ENSG00000162551.14::ENSG00000089101.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1655 TRUE 655 ALPL ENSG00000162551.14 protein_coding + + chr1:21509397-21578410:+ chr1:21509517:+ chr1:21835890-21904903:+ chr1:21836010:+ CFAP61 ENSG00000089101.19 protein_coding + + chr20:20052514-20360703:+ chr20:20166397:+ chr20:20033158-20341347:+ chr20:20147041:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 2 1 3 15 ENST00000468526.1 ENST00000245957.10 downstream upstream duplicates(1) TCGGGCCCCGCGGCCGCCTTTATAAGGCGGCGGGGGTGGTGGCCCGGGCCGCGTTGCGCTCCCGCCACTCCGCGCCCGCTATCCTGGCTCCGTGCTCCCACGCGCTTGTGCCTGGACGGACCCTCGCCAGTGCTCTGCGCAG|GTCGCTGGATTTTATGAATTTTGTTTTCAGTCTTTTTTCT___GATAAGAACTTCTGTGTAATTTCTCTGCCCCATCTCACCCCCGAG...TGTCTCTACTACCGTGTTTACCCAAAATCCAGAGAAGGCAAG___TTCCAGAACCCCTACGCCCACTCCCTGACATCTGCCCTTCATTACTTGGTTCCCcTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9327 ALPL::CFAP61 ENSG00000162551.14::ENSG00000089101.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1655 TRUE 655 ALPL ENSG00000162551.14 protein_coding + + chr1:21509397-21578410:+ chr1:21509517:+ chr1:21835890-21904903:+ chr1:21836010:+ CFAP61 ENSG00000089101.19 protein_coding + + chr20:20052514-20360703:+ chr20:20187930:+ chr20:20033158-20341347:+ chr20:20168574:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 2 1 3 19 ENST00000468526.1 ENST00000245957.10 downstream upstream none TCGGGCCCCGCGGCCGCCTTTATAAGGCGGCGGGGGTGGTGGCCCGGGCCGCGTTGCGCTCCCGCCACTCCGCGCCCGCTATCCTGGCTCCGTGCTCCCACGCGCTTGTGCCTGGACGGACCCTCGCCAGTGCTCTGCGCAG|GTCCATTAATATAAGATTTGCCACTCTCTTGGATACTCCTGGTGTGGAAAATCTTGTCAGCACCCTCATGTTGAATAAAAGCATATTGGAG...AAGATCATTGTGGTTGGTGCATCCAGTGTTGGAATTTCCTTCCTAGAGACATTGGTATTTTG___CTCTCACATGAAGTTTAATAATCTTACCCTGATTTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9328 ALPL::CFAP61 ENSG00000162551.14::ENSG00000089101.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1655 TRUE 655 ALPL ENSG00000162551.14 protein_coding + + chr1:21509397-21578410:+ chr1:21509517:+ chr1:21835890-21904903:+ chr1:21836010:+ CFAP61 ENSG00000089101.19 protein_coding + + chr20:20052514-20360703:+ chr20:20164050:+ chr20:20033158-20341347:+ chr20:20144694:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 1 1 3 20 ENST00000468526.1 ENST00000245957.10 downstream upstream none TCGGGCCCCGCGGCCGCCTTTATAAGGCGGCGGGGGTGGTGGCCCGGGCCGCGTTGCGCTCCCGCCACTCCGCGCCCGCTATCCTGGCTCCGTGCTCCCACGCGCTTGTGCCTGGACGGACCCTCGCCAGTGCTCTGCGCAG|GACATAGAAAAACTCAGTGACATCTCCACTGGATATGCACAG...CTACAGGGGAGCCTCAGCTGCTTTTTGTATTCAGCTGTTTTGTATTGATGAGAAtTATGAAGCAAG___GTCGCTGGATTTTATGAATTTTGTTTTCAGTCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9329 TASOR2::UCN3 ENSG00000108021.22::ENSG00000178473.7 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TASOR2 ENSG00000108021.22 protein_coding + + chr10:5684731-5763779:+ chr10:5685175:+ chr10:5726694-5805742:+ chr10:5727138:+ UCN3 ENSG00000178473.7 protein_coding + + chr10:5364966-5374692:+ chr10:5373715:+ chr10:5406929-5416655:+ chr10:5415678:+ chr10:5688650,chr10:5688643 chr10:5369563,chr10:5369553 NA NA chr10:5730613,chr10:5730606 chr10:5411526,chr10:5411516 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Corticotropin-releasing_factor_family(100%) |CRF(100%) 1 3 0 69 8 ENST00000695832.1 ENST00000380433.5 downstream upstream none CGCGGGAGCGCGGAGCCGGCGACTGGTGCTTCCCACGTGCGCCGGTGTCGCGAGGGCCCGGGAGGACGCAGAGCACGGCCGGGAGAAGCATGGGAAGGAGGCCGAGCCGGGATCTCAGGTCCTCGGGGGCGGCGGCCACGCCAAGGACGG|GGAGAGATGCTGATGCCGGTCCACTTCCTGCTGCTCCTGCTGCTGCTCCTGGGGGGCCCCAGGACAGGCCTCCCCCACAAGTTCTACAAAGCCAAGCCCATCTTCAGCTGCCTCAACACCGCCCTGTCTGAGGCTGAGAAGGGCCAGTGGGAGGATGCATCCCTGCTGAGCAAGAGGAGCTTCCACTACCTGCGCAGCAGAGACGCCTCTTCGGGAGAGGAGGAGGAGGGC MGRRPSRDLRSSGAAATPRT|grdadagplpaapaaapggpqdrpppqvlqsqahlqlpqhrpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9337 ATAD3B::ENSG00000284719 ENSG00000160072.20::ENSG00000284719.3 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATAD3B ENSG00000160072.20 protein_coding + + chr1:1471765-1497848:+ chr1:1479108:+ chr1:1407145-1433228:+ chr1:1414488:+ ENSG00000284719 ENSG00000284719.3 lncRNA + - chr1:39799419-39809450:+ chr1:39800055:- chr1:40265091-40275122:+ chr1:40265727:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon inversion/3'-3' medium none ATPase_family_AAA_domain-containing_protein_3__N-terminal(43%)| DUF3523(46%)| 0 1 2 350 23 ENST00000673477.1 unknown downstream downstream none GGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGCC___AGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAG|GATCTGCCTTCTGTTGAGTGGCTAGTACCCATCCCATCCAAGCACTTTGCATGTATTATCTCCTTGCCTCCTCACAATTGCCCAAAGAG___GGTAAGCTGAGGCCCATGGAGGGTCAGTG...ACTGCACACAGAAAGGATACGGCTGACGCTTCGTGAGCAAGGCTGGTTGTCACCAAGTCACTGGTGAAACGGGGAGAGCGCCCCTAGTGAGACGGTGTGAG RKTLSEETRQHQARAQYQDKLARQRYEDQLKQQ|dlpsvewlvpipskhfaciislpphncpkrvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9360 TXNRD1::LINC02385 ENSG00000198431.18::ENSG00000257193.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 954 TRUE 1659 TRUE 656 TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104289040:+ chr12:104609557-104744085:+ chr12:104682818:+ LINC02385 ENSG00000257193.1 lncRNA + + chr12:104170395-104177659:+ chr12:104177517:+ chr12:104564173-104571437:+ chr12:104571295:+ chr12:104348459,chr12:104348458 chr12:104172803,chr12:104172799 NA NA chr12:104742237,chr12:104742236 chr12:104566581,chr12:104566577 NA NA sense sense unknown CDS/splice-site exon/splice-site duplication medium none Glutaredoxin(100%)| Glutaredoxin(100%)| 7 7 2 14031 1073 ENST00000503506.6 ENST00000547554.1 downstream upstream mismatches(1) GTCGAGTCCTGAAGGAGGGCCTGATGTCTTCATCATTCTCAAATTCTT___AGGACGGTCGGGCCCTGGAAGGAACGCTCTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTGTGAAACAGAGAAAGATAGGCGGCCATGGTCCAACCTTGAAG|TATATAGAAAGCTGCATGGTGAAATGAATGGTGTCTGTTCCACTTCACAGTTTATACCCAGCATCTAACTCAGGACTTGGCACATCACAGGAGCCTAATAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9361 TXNRD1::LINC02385 ENSG00000198431.18::ENSG00000257193.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1659 TRUE 656 TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104339273:+ chr12:104609557-104744085:+ chr12:104733051:+ LINC02385 ENSG00000257193.1 lncRNA + + chr12:104170395-104177659:+ chr12:104177517:+ chr12:104564173-104571437:+ chr12:104571295:+ chr12:104348459,chr12:104348458 chr12:104172803,chr12:104172799 NA NA chr12:104742237,chr12:104742236 chr12:104566581,chr12:104566577 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Glutaredoxin(100%),Pyridine_nucleotide-disulphide_oxidoreductase(100%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(96%)| FAD_binding_2(100%),GIDA(100%),Glutaredoxin(100%),HI0933_like(100%),NAD_binding_8(100%),Nse4-Nse3_bdg(100%),Nse4_C(100%),Pyr_redox(100%),Pyr_redox_2(100%),Pyr_redox_3(100%),Pyr_redox_dim(45%)| 3 2 6 11331 1073 ENST00000525566.6 ENST00000547554.1 downstream upstream mismatches(1) AAGAGATAACAACAAATGTTATGCAAAAATAATCTGTAATACTAAAGACAAT___GAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTTGCAGCTGCGCTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCAGAG|TATATAGAAAGCTGCATGGTGAAATGAATGGTGTCTGTTCCACTTCACAGTTTATACCCAGCATCTAACTCAGGACTTGGCACATCACAGGAGCCTAATAAATATCTGTTGAAAAGTGA RDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE|yiescmvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9368 PEX14::PGD ENSG00000142655.13::ENSG00000142657.21 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 955 TRUE 1660 TRUE 657 PEX14 ENSG00000142655.13 protein_coding + + chr1:10472288-10630758:+ chr1:10495321:+ chr1:10532345-10690815:+ chr1:10555378:+ PGD ENSG00000142657.21 protein_coding + + chr1:10398592-10420511:+ chr1:10417376:+ chr1:10458649-10480568:+ chr1:10477433:+ chr1:10498665,chr1:10498664 chr1:10417219,chr1:10417215 NA NA chr1:10558722,chr1:10558721 chr1:10477276,chr1:10477272 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Pex14_N-terminal_domain(9%)|6-phosphogluconate_dehydrogenase__C-terminal_domain(49%) CIDE-N(100%),Pex14_N(0%)|6PGD(28%) 55 232 24 339 6091 ENST00000356607.9 ENST00000270776.13 downstream upstream duplicates(33),mismatches(17),multimappers(5) AGAAAGATGGCGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAG___CCAAGCTCTACTCCAGGAAGTGAAAATGTGCTGCCTCGAGAGCCGCTG|GCACTCTACGCTTCCAAGATCATCTCTTACGCTCAAGGCTTTATGCTGCTAAGGCAGGCAGCCACCGAGTTTGGCTGGACTCTCAATTATGGTGGCATCGCCCTGATGTGGAGAGGGGGCTGCATCATTAGAAG___TGTATTCCTAGGAAAGATAAAGGATGCATTTGATCGAAACCCGGAACTTCAGAACCTCC MASSEQAEQPSQPSSTPGSENVLPREPL|ALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9369 PEX14::PGD ENSG00000142655.13::ENSG00000142657.21 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1660 TRUE 657 PEX14 ENSG00000142655.13 protein_coding + + chr1:10472288-10630758:+ chr1:10495321:+ chr1:10532345-10690815:+ chr1:10555378:+ PGD ENSG00000142657.21 protein_coding + + chr1:10398592-10420511:+ chr1:10418826:+ chr1:10458649-10480568:+ chr1:10478883:+ chr1:10498665,chr1:10498664 chr1:10417219,chr1:10417215 NA NA chr1:10558722,chr1:10558721 chr1:10477276,chr1:10477272 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Pex14_N-terminal_domain(9%)|6-phosphogluconate_dehydrogenase__C-terminal_domain(34%) CIDE-N(100%),Pex14_N(0%)|6PGD(10%) 2 6 9 339 6172 ENST00000356607.9 ENST00000270776.13 downstream upstream none GCCTCAGAAAGATGGCGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAG___CCAAGCTCTACTCCAGGAAGTGAAAATGTGCTGCCTCGAGAGCCGCTG|TGTATTCCTAGGAAAGATAAAGGATGCATTTGATCGAAACCCGGAACTTCAGAACCTCCTACTGGACGACTTCTTTAAGTCAGCTGTTGAAAACTGCCAG___GACTCCTGGCGGCGGGCAGTCAGCACTGGGGTCCAGGCTGGCATTCCCATGCCCTGTTTTACCAC MASSEQAEQPSQPSSTPGSENVLPREPL|ciprkdkgci* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9370 MYO10::BASP1-AS1 ENSG00000145555.15::ENSG00000215196.5 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1661 TRUE 658 MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16935788:- chr5:16662016-16936397:- chr5:16935897:- BASP1-AS1 ENSG00000215196.5 lncRNA - - chr5:17089296-17217047:- chr5:17090308:- chr5:17089405-17217156:- chr5:17090417:- chr5:16897029,chr5:16897035 chr5:17092617,chr5:17092620 NA NA chr5:16897138,chr5:16897144 chr5:17092726,chr5:17092729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Myosin_X_N-terminal_SH3_domain(1%)| SH3_19(0%)| 112 76 85 547 260 ENST00000513610.6 ENST00000655365.1 upstream downstream duplicates(26),mismatches(23) GACTTGGGTTTGGGCGAACAAAAGGTGAGAAGGACAAGAAGGGACCGGGCGATGGCAGCAGGGGAGCCCCGCGGGCGCGCGTCCTCGGGAGTGGCGCCGTGACACGCATGGTTTCCCCGGACCCGCGGCGGCGCTGACTTCCGCGAGTCGGAGCGGCACTCGGCGAGTCCGGGACTGCGCTGGAACAATGGATAACTTCTTCACCGAG|GTCAGCTGAGAGCTGTGACTCTGCTCTGTGTGTCTTCATTCTGGGATCAAGCTCACCTGGGCCATGTTGATCTTGGGGAAGGAGAAGGCAAATGACAAGAGCACGCAATGGCTCTTCAGTATCCGCTGGGAAGAGGCACACCACATTCCCAC MDNFFTE|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9371 MYO10::BASP1-AS1 ENSG00000145555.15::ENSG00000215196.5 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1661 TRUE 658 MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16916055:- chr5:16662016-16936397:- chr5:16916164:- BASP1-AS1 ENSG00000215196.5 lncRNA - - chr5:17089296-17217047:- chr5:17090308:- chr5:17089405-17217156:- chr5:17090417:- chr5:16897029,chr5:16897035 chr5:17092617,chr5:17092620 NA NA chr5:16897138,chr5:16897144 chr5:17092726,chr5:17092729 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Myosin_X_N-terminal_SH3_domain(1%)| SH3_19(16%)| 22 26 95 69 260 ENST00000513882.5 ENST00000655365.1 upstream downstream duplicates(7),mismatches(16) GTGAAATGAATTTACTAAGTGGATAATTTGCTGAGCATTAGCTGACCCTGACGTGGCGGAACGAAGGTCTCTGGAGATGGTTCATGGTGGAAATCTGGGCTTGATGGGTCGGTAATGAGACTTCAGCGATGACATCTTTACCAAGGCTGAGGCTTAACACTCGGGACCAAGCGATTCAACTG|GTCAGCTGAGAGCTGTGACTCTGCTCTGTGTGTCTTCATTCTGGGATCAAGCTCACCTGGGCCATGTTGATCTTGGGGAAGGAGAAGGCAAATGACAAGAGCACGCAATGGCTCTTCAGTATCCGCTGGGAAGAGGCACACCACATTCCCACTGACATTTTATGGAAGCAGGCTGTGTGGCCATGCTTGAGATCAGTGTGTGGGGAAGTAAATTCACCCACAGGGTAGACAGAGCA MTSLPRLRLNTRDQAIQL|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9372 NFAT5::ENSG00000260914 ENSG00000102908.23::ENSG00000260914.3 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1662 TRUE 659 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ ENSG00000260914 ENSG00000260914.3 protein_coding + + chr16:69299682-69322700:+ chr16:69316225:+ chr16:69333585-69356603:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |AAA(100%),AAA_5(100%),AAA_lid_3(100%),MIT(1%),RuvB_N(100%),TIP49(100%) 71 126 50 349 1024 ENST00000426654.6 ENST00000570054.3 downstream upstream duplicates(24),inconsistently_clipped(1),mismatches(11) CCCCGGTTCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCGCCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG|ATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGG___CAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAA MPSDFISLLSADLDLESPKSLYSR|deahsdkakesirakcvqyldraeklkdylrskekhgkkpvkenqsegkgsdsdsegdnpekkkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9373 NFAT5::ENSG00000260914 ENSG00000102908.23::ENSG00000260914.3 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1662 TRUE 659 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ ENSG00000260914 ENSG00000260914.3 protein_coding + + chr16:69299682-69322700:+ chr16:69316225:+ chr16:69333585-69356603:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |AAA(100%),AAA_5(100%),AAA_lid_3(100%),MIT(1%),RuvB_N(100%),TIP49(100%) 26 32 71 144 1024 ENST00000426654.6 ENST00000570054.3 downstream upstream duplicates(11),mismatches(9) GCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG___ATTCTCTGAAGTTACACCCATCACAGAATTTTCATAGAGCTGGACTATTGGAAG|ATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGG___CAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAAGAACAGCTGATGG___GTGCCGTCGTGATGGAGAAGCC MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLE|deahsdkakesirakcvqyldraeklkdylrskekhgkkpvkenqsegkgsdsdsegdnpekkklqeqlmgavvmek NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9375 NFAT5::VPS4A ENSG00000102908.23::ENSG00000132612.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 956 TRUE 1663 TRUE 660 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ VPS4A ENSG00000132612.16 protein_coding + + chr16:69311350-69326939:+ chr16:69316225:+ chr16:69345253-69360842:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),MIT_(microtubule_interacting_and_transport)_domain(40%),Vps4_C_terminal_oligomerisation_domain(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),MIT(1%),RuvB_N(100%),TIP49(100%),Vps4_C(100%) 71 126 50 349 1024 ENST00000426654.6 ENST00000254950.13 downstream upstream duplicates(24),inconsistently_clipped(1),mismatches(11) CCCCGGTTCGGTGCCCGCGGTCCCGGAGAGGAGGTGCCGCCGCCACCGCCGCTCCCCCCCTCCCGCTGCCCTCGGGCCGGGCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG|ATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGG___CAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAA MPSDFISLLSADLDLESPKSLYSR|dEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 69600277|69602451 TRUE|FALSE 69349911|69349911 FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9376 NFAT5::VPS4A ENSG00000102908.23::ENSG00000132612.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 957 TRUE 1663 TRUE 660 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ VPS4A ENSG00000132612.16 protein_coding + + chr16:69311350-69326939:+ chr16:69316225:+ chr16:69345253-69360842:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),MIT_(microtubule_interacting_and_transport)_domain(40%),Vps4_C_terminal_oligomerisation_domain(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),MIT(1%),RuvB_N(100%),TIP49(100%),Vps4_C(100%) 26 32 71 144 1024 ENST00000426654.6 ENST00000254950.13 downstream upstream duplicates(11),mismatches(9) GCTGGGTCGAGCTGCGATGCCCTCGGACTTCATCTCATTGCTCAGCGCGGACCTAGACCTGGAATCGCCCAAGTCCCTCTACTCGCGAG___ATTCTCTGAAGTTACACCCATCACAGAATTTTCATAGAGCTGGACTATTGGAAG|ATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGG___CAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAAGAACAGCTGATGG___GTGCCGTCGTGATGGAGAAGCC MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLE|dEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 69600277|69602451 FALSE|TRUE 69349911|69349911 FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9378 ZNF486::RFXANK ENSG00000256229.8::ENSG00000064490.14 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 958 TRUE 1664 TRUE 661 ZNF486 ENSG00000256229.8 protein_coding + + chr19:20167214-20200488:+ chr19:20197104:+ chr19:20278023-20311297:+ chr19:20307913:+ RFXANK ENSG00000064490.14 protein_coding + + chr19:19192229-19201869:+ chr19:19196966:+ chr19:19303038-19312678:+ chr19:19307775:+ chr19:20197450,chr19:20197616,chr19:20197786,chr19:20197366,chr19:20197448 chr19:19195087,chr19:19195085,chr19:19195094,chr19:19195087,chr19:19195083 NA NA chr19:20308259,chr19:20308425,chr19:20308595,chr19:20308175,chr19:20308257 chr19:19305896,chr19:19305894,chr19:19305903,chr19:19305896,chr19:19305892 NA NA sense sense in-frame CDS CDS/splice-site duplication high none KRAB_box(100%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%) KRAB(100%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 61 63 52 154 783 ENST00000335117.9 ENST00000593273.5 downstream upstream duplicates(6),low_entropy(1),mismatches(21) GAATAAAACCTCTGACTATGAAGAGACATGAGATGATTGCCAAACCCCCAG___TTGTGTGTTCTCATTTTGCCCAAGACCTTTGGCCAGAGCAGAGCATAAAAGATTCTTACCAAAAAGTGATACTGAGAAAATTTGAAAAATGTGGACATGGCAATTTACACTTTAAAAAAGGCTGTGAAAGTGTGGATGAGT|GCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTAGACT___CCCTGTCCATCCACCAGCTCGCAGCACAGGGGGAGCTGGACCAGCTGAAGGAGCATTTGCGG...___GTGACAACCTCGTCAACAAGCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCCTTTGGAG IKPLTMKRHEMIAKPPVVCSHFAQDLWPEQSIKDSYQKVILRKFEKCGHGNLHFKKGCESVDE|cSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9379 ZNF486::RFXANK ENSG00000256229.8::ENSG00000064490.14 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1664 TRUE 661 ZNF486 ENSG00000256229.8 protein_coding + + chr19:20167214-20200488:+ chr19:20186082:+ chr19:20278023-20311297:+ chr19:20296891:+ RFXANK ENSG00000064490.14 protein_coding + + chr19:19192229-19201869:+ chr19:19196966:+ chr19:19303038-19312678:+ chr19:19307775:+ chr19:20197450,chr19:20197616,chr19:20197786,chr19:20197366,chr19:20197448 chr19:19195087,chr19:19195085,chr19:19195094,chr19:19195087,chr19:19195083 NA NA chr19:20308259,chr19:20308425,chr19:20308595,chr19:20308175,chr19:20308257 chr19:19305896,chr19:19305894,chr19:19305903,chr19:19305896,chr19:19305892 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none KRAB_box(100%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%) KRAB(100%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 1 1 8 394 783 ENST00000335117.9 ENST00000392324.8 downstream upstream mismatches(3) CTGGACACTGCACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTACAGACACCTGGTCTTCCTTG___GTATTATTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAATAAAACCTCTGACTATGAAGAGACATGAGATGATTGCCAAACCCCCAG|GCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTAGACT___GTGACAACCTCGTCAACAAGCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCCTTTGGAGAGATTGAGA LDTAQQNLYRDVMLENYRHLVFLGIIVSKPDLITCLEQGIKPLTMKRHEMIAKPP|gSSLKHSTTLTNRQRGNEVSALPATLDCDNLVNKPDERGFTPLIWASAFGEIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9380 ZNF486::RFXANK ENSG00000256229.8::ENSG00000064490.14 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1664 TRUE 661 ZNF486 ENSG00000256229.8 protein_coding + + chr19:20167214-20200488:+ chr19:20186082:+ chr19:20278023-20311297:+ chr19:20296891:+ RFXANK ENSG00000064490.14 protein_coding + + chr19:19192229-19201869:+ chr19:19196963:+ chr19:19303038-19312678:+ chr19:19307772:+ chr19:20197450,chr19:20197616,chr19:20197786,chr19:20197366,chr19:20197448 chr19:19195087,chr19:19195085,chr19:19195094,chr19:19195087,chr19:19195083 NA NA chr19:20308259,chr19:20308425,chr19:20308595,chr19:20308175,chr19:20308257 chr19:19305896,chr19:19305894,chr19:19305903,chr19:19305896,chr19:19305892 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none KRAB_box(100%)|Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%) KRAB(100%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 1 0 8 394 783 ENST00000335117.9 ENST00000456252.7 downstream upstream mismatches(3) CTGGACACTGCACAGCAGAATTTATATAGGGATGTGATGTTAGAGAACTACAGACACCTGGTCTTCCTTG___GTATTATTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAATAAAACCTCTGACTATGAAGAGACATGAGATGATTGCCAAACCCCCAG|CAGGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTAGACT___GTGACAACCTCGTCAACAAGCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCCTTTGGAGAGATTGAGA LDTAQQNLYRDVMLENYRHLVFLGIIVSKPDLITCLEQGIKPLTMKRHEMIAKPP|aGSSLKHSTTLTNRQRGNEVSALPATLDCDNLVNKPDERGFTPLIWASAFGEIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9381 KLC1::COA8 ENSG00000126214.22::ENSG00000256053.9 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1665 TRUE 662 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ COA8 ENSG00000256053.9 protein_coding + + chr14:103562960-103607523:+ chr14:103571623:+ chr14:104029297-104073860:+ chr14:104037960:+ chr14:103653466 chr14:103564725 NA NA chr14:104119803 chr14:104031062 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Cytochrome_c_oxidase_assembly_factor_8(100%) DUF2315(69%)| 79 34 58 630 1054 ENST00000348520.10 ENST00000674165.1 downstream upstream duplicates(8),low_entropy(1),mismatches(15) GCTGGGCTGCTGGTGCGAGGAGCCGCGGGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTACATACCTGAAAATGAATCTCCATTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGAATGGAATCAACAGTTCTGGGCAAACCAGAATTTGACTTTTAGTAAG___GAAAAAGAAGAATTTATTCACTCAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9382 KLC1::COA8 ENSG00000126214.22::ENSG00000256053.9 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1665 TRUE 662 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ COA8 ENSG00000256053.9 protein_coding + + chr14:103562960-103607523:+ chr14:103587274:+ chr14:104029297-104073860:+ chr14:104053611:+ chr14:103653466 chr14:103564725 NA NA chr14:104119803 chr14:104031062 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(33%) DUF2315(69%)| 11 2 13 630 1040 ENST00000348520.10 ENST00000674165.1 downstream upstream mismatches(2) TGCTGGTGCGAGGAGCCGCGGGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTCAGAAGCACATGTATTATAACAG___AGATTGGTACAAGCGCAATTTTGCCATCACCTTCTTCATGGGAAAAGTGGCCCTGGAAAGGATTTGGAACAAGCTTAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9383 KLC1::ENSG00000256500 ENSG00000126214.22::ENSG00000256500.6 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1666 TRUE 663 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ ENSG00000256500 ENSG00000256500.6 protein_coding + + chr14:103562962-103685924:+ chr14:103571623:+ chr14:104029299-104152261:+ chr14:104037960:+ chr14:103653466 chr14:103564725 NA NA chr14:104119803 chr14:104031062 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Cytochrome_c_oxidase_assembly_factor_8(100%),Tetratricopeptide_repeat(100%) DUF2315(69%)|DUF2315(100%),PPR(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 79 32 57 630 1054 ENST00000348520.10 ENST00000472726.3 downstream upstream duplicates(8),low_entropy(1),mismatches(15) GCTGGGCTGCTGGTGCGAGGAGCCGCGGGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCTCAAGATTCTGCCCTCCAAGAAAGTCTTGCCATGATTGGATAGGACCCCCAGATAAATATTCAAACCTTCGACCTGTTCACTTTTACATACCTGAAAATGAATCTCCATTGGAACAAAAGCTTAGAAAATTAAGACAAGAAACACAAGAATGGAATCAACAGTTCTGGGCAAACCAGAATTTGACTTTTAGTAAG___GAAAAAGAAGAATTTATTCACTCAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9384 KLC1::ENSG00000256500 ENSG00000126214.22::ENSG00000256500.6 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1666 TRUE 663 KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103629494:+ chr14:104028233-104180586:+ chr14:104095831:+ ENSG00000256500 ENSG00000256500.6 protein_coding + + chr14:103562962-103685924:+ chr14:103587274:+ chr14:104029299-104152261:+ chr14:104053611:+ chr14:103653466 chr14:103564725 NA NA chr14:104119803 chr14:104031062 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cytochrome_c_oxidase_assembly_factor_8(31%),Tetratricopeptide_repeat(100%) DUF2315(69%)|DUF2315(81%),PPR(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 11 1 13 630 1040 ENST00000348520.10 ENST00000472726.3 downstream upstream mismatches(2) TGCTGGTGCGAGGAGCCGCGGGGCTGTGCTCGGCGGCCAAGGGGACAGCGCGTGGGTGGCCGAGGATGCTGCGGGGCGGTAGCTCCGGCGCCCCTcGCTGGTGACTGCTGCGCCGTGCCTCACACAGCCGAGGCGGGCTCGGCGCACAGTCGCTGCTCCGCGCtCGCGCCCGGCGGCGCTCCAGGTGCTGACAGCGCGAGAGAGCGCGGCCCTCAGGAGCAAGGCG|GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTCAGAAGCACATGTATTATAACAG___AGATTGGTACAAGCGCAATTTTGCCATCACCTTCTTCATGGGAAAAGTGGCCCTGGAAAGGATTTGGAACAAGCTTAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9385 RUNX1::ENSG00000258053 ENSG00000159216.19::ENSG00000258053.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000258053 ENSG00000258053.1 lncRNA - - chr12:71047402-71118247:- chr12:71047679:- chr12:71441182-71512027:- chr12:71441459:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Runt_domain(70%)| Runt(7%)| 46 51 32 449 233 ENST00000300305.7 ENST00000549357.1 upstream downstream duplicates(13),low_entropy(17),mismatches(3) AGACCCTGCCCATCGCTTTCAAG___GTGGTGGCCCTAGGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG|CCTGCCCTGCCCTCCCTCCTGTGCCTATAAAGACTCCAGACTCGGTAGAGGGAAGAGAAGCAGCTTGACTGGACAGAGGTGACTTGACTTCAGAGGGATGGCAGGACTTTGGAGGAGAGACAACTTGACTTTGGAGAGACTGCTTGACTTCAGGGAAGAGCTGACCTGAGACAGCTGAACTTTGGGGGAAGATTACC TLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR|acpalppvpiktpdsvegreaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9388 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71046741:- chr12:71427902-71498306:- chr12:71440521:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Runt_domain(70%)| Runt(7%)| 38 19 17 449 57 ENST00000300305.7 ENST00000548497.1 upstream downstream duplicates(4),mismatches(4) CTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAG___GTGGTGGCCCTAGGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG|TTCTGGGAACCCTAAAGAACCATTTGCTACTTCTGACAGTCGGGAAGCCACTGATACACAGCAG___AATCTGAGGCCCAATAAAATTATGCCAATGGATCAACATCATTAGAAAAATGTATATATCATGAAGCTTCCCCAGGAGAGTCAGCACCCTGAAGGAAAT WRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR|vlgtlknhlllltvgkplihsri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9389 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71069359:- chr12:71427902-71498306:- chr12:71463139:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Runt_domain(70%)| Runt(7%)| 1 5 21 449 20 ENST00000300305.7 ENST00000548497.1 upstream downstream duplicates(2),inconsistently_clipped(1),mismappers(1),mismatches(4) GCTCCGTGCTGCCTACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAG___GTGGTGGCCCTAGGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG|GATTCATCTTCTACAGAGAAAACTCCAAGAAGAAAATCTGGAAATTTTGGCCTGATATATACAGAGACCAGATGGTTAACAG___TTCTGGGAACCCTAAAGAACCATTTGCTACTTCTGACAGTCGGGAAGCCACTGATACACAGCAG___AATCTGAGGCCCAATAAAATTATGCC SVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR|gfifyrenskkkiwkfwpdiyrdqmvnssgnpkepfatsdsreatdtqqnlrpnkim NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9390 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71069630:- chr12:71427902-71498306:- chr12:71463410:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Runt_domain(70%)| Runt(7%)| 2 0 21 449 12 ENST00000300305.7 ENST00000548497.1 upstream downstream duplicates(1),mismatches(4) GCTCCGTGCTGCCTACGCACTGGCGCTGCAACAAGACCCTGCCCATCGCTTTCAAG___GTGGTGGCCCTAGGGGATGTTCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG|AATCGCTAAGTTAGGTTTCCGGAAATTTCTGACATGGAAAAGGAAGGAGCATTTGAATTTGTTTCATACACTACAGTTTTG SVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR|esls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9391 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71034248:- chr12:71427902-71498306:- chr12:71428028:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Runt_domain(70%)| Runt(7%)| 2 1 8 449 87 ENST00000300305.7 ENST00000548497.1 upstream downstream duplicates(2) TCCAGATGGCACTCTGGTCACTGTGATGGCTGGCAATGATGAAAACTACTCGGCTGAGCTGAGAAATGCTACCGCAGCCATGAAGAACCAGGTTGCAAGATTTAATGACCTCAGGTTTGTCGGTCGAAGTGGAAGAG|AATCTGAGGCCCAATAAAATTATGCCAATGGATCAACATCATTAGAAAAATGTATATATCATGAAGCTTCCCCAGGAGAGTCAGCACCCTGAAGGAAATCCCATTCATTCATTTAGATGCATGAATTCCAGGAAAGTCCCTTGGCTTTAACTACCATCTTCATGCCAATTGCATATGATTTTATCTCCAGCTCTTGATATCTCCATTGAGCTATAGATTCATAGAGCCAATTGCTTATTTCACATATTCACTTGGATGCCTAATTATGAC PDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR|eseaq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9392 ATP6V0A1::STAT5B ENSG00000033627.18::ENSG00000173757.11 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V0A1 ENSG00000033627.18 protein_coding + + chr17:42458844-42522582:+ chr17:42483131:+ chr17:40610862-40674600:+ chr17:40635149:+ STAT5B ENSG00000173757.11 protein_coding - + chr17:42199176-42288633:- chr17:42254594:+ chr17:40351194-40440651:- chr17:40406612:+ chr17:42484814 chr17:42254027 NA NA chr17:40636832 chr17:40406045 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none V-type_ATPase_116kDa_subunit_family__(31%)| V_ATPase_I(36%)| 21 26 25 294 76 ENST00000264649.10 unknown downstream upstream duplicates(2),mismappers(4),mismatches(5) GGCGACTACGTGCACAAGTCTGTGTTTATCATTTTCTTCCAAGGCGATCAGCTGAAAAACAGAGTCAAGAAAATCTGTGAAGG___GTTCCGAGCCTCACTCTATCCCTGTCCTGAGACACCACAGGAGAGGAAGGAAATGGCTTCTGGAGTGAATACCAGGATTGATGATCTCCAAATG|GTGAACTGCTAGAGAGCTATGATTGTTTCATCTATATTTGGACCCCTAGGGTCAGGCTGTGTCTTCAGCAACTACTCAGAAAAATGAGAATGAAAAAGAAAGAAAAAAGGAAGAAAGAGAGAGAGGGAAGGACAAACTGGAAGGGAAGGGAAGGAAAAGTAGGGAGAAAGGAAGATGTAATGAGAATAGAAAATTTTTAAAAATGGAAAAAAAAAGAAGGTCGGTGCGGTGGCTCATGC GDYVHKSVFIIFFQGDQLKNRVKKICEGFRASLYPCPETPQERKEMASGVNTRIDDLQM|vnc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9396 PSPC1::IFT88 ENSG00000121390.19::ENSG00000032742.18 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19759323:- chr13:20248892-20357159:- chr13:20333463:- IFT88 ENSG00000032742.18 protein_coding + - chr13:20567138-20691444:+ chr13:20601362:- chr13:21141277-21265583:+ chr13:21175501:- chr13:19752379,chr13:19752385 chr13:20604216,chr13:20604219 NA NA chr13:20326519,chr13:20326525 chr13:21178355,chr13:21178358 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none NOPS_(NUC059)_domain(55%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| NOPS(1%),RRM_1(100%)| 5 12 8 1187 30 ENST00000471658.5 unknown upstream downstream duplicates(1),low_entropy(1),mismappers(5),mismatches(7) CACGAAAGGCTCTGGAAAGATGTGGTGATGGGGCATTCTTGCTAACAAC___GACCCCTCGTCCAGTCATTGTGGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA|ACAGGGTCTCTCTCTGTTGCTCAGGCTGGAATGCAGTGGCATGATGTCTGCTCACTGGAACCTCcGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCTGAATAGCTGGGATTATAGGCACATGCCACCACGCCGG RKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHk|qglslllrlecsgmmsahwnlrllgssnsptsas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9397 ENSG00000286153::ENSG00000258053 ENSG00000286153.2::ENSG00000258053.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286153 ENSG00000286153.2 lncRNA + + chr21:34836286-34884882:+ chr21:34836946:+ chr21:36208583-36257179:+ chr21:36209243:+ ENSG00000258053 ENSG00000258053.1 lncRNA - + chr12:71047402-71118247:- chr12:71108836:+ chr12:71441182-71512027:- chr12:71502616:+ chr21:34870246,chr21:34870240 chr12:71085849,chr12:71085840 NA NA chr21:36242543,chr21:36242537 chr12:71479629,chr12:71479620 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 4 11 2 180 23 ENST00000651798.1 unknown downstream upstream mismatches(1) AGTCTACAGCCACAGCTTGGAAAAACAGCTCTTGGCAGTTGTGTCTCTCTTAGCCAGCAAGCGTGGGGACCTGTGCCACGGAGACACCCAACAGGAATCATCATTCCAG|CCTTGGAAAGAGATTCTGAGCAGAAGATTTATCCTTCTGGGAGGTGTTCTTGTCAAAACCCATTTCAAAAACTCAGAGCTTTGAAGATGAAGTTGTTGATGGGCCTAAACTTTCTCTGAAGTGTAAAGAAGCTTCATAATCAAAAACAAAGTTTG___GTCTACAGGCCTGTGATGAGAGGCGCTGCCATGAAGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9398 SCAMP4::ENSG00000267141 ENSG00000227500.11::ENSG00000267141.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1669 TRUE 665 SCAMP4 ENSG00000227500.11 protein_coding + + chr19:1905214-1926013:+ chr19:1918990:+ chr19:1905213-1926012:+ chr19:1918989:+ ENSG00000267141 ENSG00000267141.1 lncRNA + + chr19:1860250-1862019:+ chr19:1861474:+ chr19:1860249-1862018:+ chr19:1861473:+ chr19:1919120,chr19:1919220,chr19:1919103,chr19:1919111 chr19:1860544,chr19:1860544,chr19:1860525,chr19:1860533 NA NA chr19:1919119,chr19:1919219,chr19:1919102,chr19:1919110 chr19:1860543,chr19:1860543,chr19:1860524,chr19:1860532 NA NA sense sense stop-codon CDS/splice-site exon/splice-site duplication high none SCAMP_family(73%)| MafB19-deam(100%),SCAMP(20%),dCMP_cyt_deam_1(100%)| 4 1 10 683 26 ENST00000316097.13 ENST00000586694.1 downstream upstream duplicates(1),mismatches(2) CGCTGGTTGGTGAAACAGAGATGTCAG___AAAAGGAGAACAACTTCCCGCCACTGCCCAAGTTCATCCCTGTGAAGCCCTGCTTCTACCAGAACTTCTCCGACGAGATCCCAGTGGAG...CTGCGCCACCCTCGGCGTCAACCTCAgTGCCTGCCTGGCCTGGTGGATCGGCGGAGGCTCGGGGACCAACTTCGGCCTGGCCTTCGTGTGGCTGCTCCTGTTCACGCCTTGCGGCTACGTGTGCTGGTTCCGGCCTGTCTACAAGGCCTTCCG___AGCCGACAGCTCCTTTAATTTCATGGCGTTTTTCTTCATCTTCGGAGCCCAGTTTGTCCTGACCGTCATCCAGGCGATTGGCTTCTCCGGCTGGGGCGCGTG|ACCCCCAATGTCCCTCCCCGCGGAGATACACGGACCCCATTGCCCTCAAAAAGAGGTAACACCCTGGGACCCCTCCGCCGAGGATGTGTGGCTCCTCGCAGAAAACGCAGACCCCACCCAAGTCCTGTCTTGACGCCCTCGGTTCCCGTCTGTGTCTCAAG___GCGTCCCAGCGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9399 SCAMP4::ENSG00000267141 ENSG00000227500.11::ENSG00000267141.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1669 TRUE 665 SCAMP4 ENSG00000227500.11 protein_coding + + chr19:1905214-1926013:+ chr19:1918990:+ chr19:1905213-1926012:+ chr19:1918989:+ ENSG00000267141 ENSG00000267141.1 lncRNA + + chr19:1860250-1862019:+ chr19:1861769:+ chr19:1860249-1862018:+ chr19:1861768:+ chr19:1919120,chr19:1919220,chr19:1919103,chr19:1919111 chr19:1860544,chr19:1860544,chr19:1860525,chr19:1860533 NA NA chr19:1919119,chr19:1919219,chr19:1919102,chr19:1919110 chr19:1860543,chr19:1860543,chr19:1860524,chr19:1860532 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none SCAMP_family(73%)| MafB19-deam(100%),SCAMP(20%),dCMP_cyt_deam_1(100%)| 8 2 5 683 44 ENST00000316097.13 ENST00000586694.1 downstream upstream duplicates(1),mismatches(2) CCTGGCCTGGTGGATCGGCGGAGGCTCGGGGACCAACTTCGGCCTGGCCTTCGTGTGGCTGCTCCTGTTCACGCCTTGCGGCTACGTGTGCTGGTTCCGGCCTGTCTACAAGGCCTTCCG___AGCCGACAGCTCCTTTAATTTCATGGCGTTTTTCTTCATCTTCGGAGCCCAGTTTGTCCTGACCGTCATCCAGGCGATTGGCTTCTCCGGCTGGGGCGCGTG|GCGTCCCAGCGCGGCTCCCCATACCCCAAAGATGGACCCTCAATTCTTCCGCAAGGCATTCGCGGCCCCTGCTCATCTCAGCCCCACCACTCTGGACGGCCCACTTCCCTTCGGCTGCTCCACGTGTCCCTACAATCCGAGCCCACGGACCAAGCCTCCTTGGAGTGTCCAGCTGCCCAAAGCGGCC LAWWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQAIGFSGWGAw|rpsaaphtpkmdpqffrkafaapahlspttldgplpfgcstcpynpsprtkppwsvqlpka NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9404 MYO10::BASP1 ENSG00000145555.15::ENSG00000176788.9 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16935788:- chr5:16662016-16936397:- chr5:16935897:- BASP1 ENSG00000176788.9 protein_coding + - chr5:17065598-17276843:+ chr5:17075069:- chr5:17065707-17276952:+ chr5:17075178:- chr5:16897029,chr5:16897035 chr5:17092617,chr5:17092620 NA NA chr5:16897138,chr5:16897144 chr5:17092726,chr5:17092729 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Myosin_X_N-terminal_SH3_domain(1%)| SH3_19(0%)| 2 2 5 547 24 ENST00000513610.6 unknown upstream downstream none CGCAGAGGGAGGGGGCCGCGCTCGCCAGCACCCCGCCGCCTTCCCCCGCCTGGGGGAAGAATGTGCCACCAGCTGTTCTCCGCTTGCGAGCGCTGCGCCCA...CTTGGAGGAAGAAGAGACAAAGGCTGCCGTCGGGACGGGCGAGTTAGGGACTTGGGTTTGGGCGAACAAAAGGTGAGAAGGACAAGAAGGGACCGGGCGATGGCAGCAGGGGAGCCCCGCGGGCGCGCGTCCTCGGGAGTGGCGCCGTGACACGCATGGTTTCCCCGGACCCGCGGCGGCGCTGACTTCCGCGAGTCGGAGCGGCACTCGGCGAGTCCGGGACTGCGCTGGAACAATGGATAACTTCTTCACCGAG|AATGGAAATGAGGAAAGGAAAGGAGAAAGAGAAGGAACATTTATTTAGCTCTTCCTATGTGCTTGCATTCAG___...AATTTTGCCA...___TAgGTGTCAGGCCTCTGAGCCCAAGCCAAGCCATCGCAACCCCTGTGACTTGC MDNFFTE|ngneerkgeregtfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9406 CWC27::NLN ENSG00000153015.17::ENSG00000123213.23 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CWC27 ENSG00000153015.17 protein_coding + + chr5:64766368-65102412:+ chr5:64804386:+ chr5:64062195-64398239:+ chr5:64100213:+ NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65777427:+ chr5:65018032-65167553:+ chr5:65073254:+ chr5:64860641,chr5:64860639 chr5:65767963,chr5:65767958 NA NA chr5:64156468,chr5:64156466 chr5:65063790,chr5:65063785 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%)|Peptidase_family_M3(100%) Pro_isomerase(100%)|Peptidase_M3(100%) 1 4 1 287 320 ENST00000693303.1 ENST00000380985.10 downstream upstream none GGATGATCCACATCTCAGTTCTGTTCCAGTTGTAGAAAG___TGAAAAAGGTGATGCACCAGATTTAGTTGAT___GATGGAGAAGATGAAAGTGCAGAGCATGATGAATATATTGATGGTGATGAAAAGAACCTGATGAGAGAAAGAATTGCCAAAAAATTAAAAAAGGACACAAGTGCGAATGTTAAATCAGCTGGAGAAGGAGAAGTGGAGAAGAAATCAGTCAGCCGCAG|GAAACCTGTGATCTGGGGAAGATAAAACCTGAGGCCAGACGATACTTGGAAAAGTCAATTAAAATGGGGAAAAGAAATGGGCTCCATCTTCCTGAACAAGTACAG...GACAGTTTAGAAAAGACAGATGATGACAAGTATAAAATTACCTTAAAATATCCACACTATTTCCCTGTCATGAAGAAATGTTGTATCCCTGAAACCAGAAG DDPHLSSVPVVESEKGDAPDLVDDGEDESAEHDEYIDGDEKNLMRERIAKKLKKDTSANVKSAGEGEVEKKSVSRr|kpviwgr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9408 AUTS2::ENSG00000225718 ENSG00000158321.19::ENSG00000225718.2 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69599962:+ chr7:69063282-70258492:+ chr7:69064948:+ ENSG00000225718 ENSG00000225718.2 lncRNA - + chr7:69186821-69430923:- chr7:69349221:+ chr7:68651808-68895909:- chr7:68814207:+ chr7:69726427,chr7:69726427 chr7:69296872,chr7:69296869 NA NA chr7:69191413,chr7:69191413 chr7:68761858,chr7:68761855 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 2 1 1 11 1 ENST00000342771.10 unknown downstream upstream none CGGCGCGGCCGGCGGCGGCGGGGCTGGCCGGACCCGGGCGCTCTCACTCGCCTCGTCGTCGGGCTCCGACAAGGAAGACAATGGGAAGaCCCCGTCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCGGAGAGAGTCCACCTCGGCAGAAGAGGACATCATTGATGGATTTGCCATGACCAGCTTTGTCACTTTTGAAGCGCTGGAG|GTTCCCATTCACTGCAGAAGTGTAACCCCAAAACAATGAAATCAATCAGCACGGAAGCACTATCTTCAGCGTTCTGAAT GAAGGGGAGRTRALSLASSSGSDKEDNGKtPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALE|vpihcrsvtpkq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9409 KSR2::FBXO21 ENSG00000171435.15::ENSG00000135108.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KSR2 ENSG00000171435.15 protein_coding - - chr12:117453012-117968990:- chr12:117855428:- chr12:117890817-118406795:- chr12:118293233:- FBXO21 ENSG00000135108.16 protein_coding - - chr12:117141991-117190470:- chr12:117177641:- chr12:117579796-117628275:- chr12:117615446:- chr12:117838347,chr12:117838352 chr12:117181779,chr12:117181781 NA NA chr12:118276152,chr12:118276157 chr12:117619584,chr12:117619586 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none SAM_like_domain_present_in_kinase_suppressor_RAS_1(100%)|Hemimethylated_DNA-binding_protein_YccV_like(100%),Transglutaminase-like_superfamily(100%) SAM_KSR1(100%)|Transglut_core2(100%),YccV-like(100%) 2 0 1 9 82 ENST00000339824.7 ENST00000622495.5 upstream downstream none AAGGAGGTCCTGGAG___GAAATCTCCCCCGGCCAGCTGAGCCTGGAGGACCTCTTGGAGATGACGGATGAACAGGTGTGCGAGACTGTGGAGAAATACGGAGCCAACCGGGAGGAGTGTGCCCGCCTCAACGCCTCCCTCTCCTGCCTCAGGAATGTCCACATGTCAG|AAAAGCTTTGACCTGGAAATACTACGCAAAAAAAATT...CAGAAGATCTTAAATAATCTTAAGGCCTTTCTTCAGCAGCCAGATGACTATGAGTCGTATCTTGAAG___GTGCTGTATATATTGACCAGTACTGCAATCCTCT KEVLEEISPGQLSLEDLLEMTDEQVCETVEKYGANREECARLNASLSCLRNVHMS|ekl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Kinase suppressor of Ras 2 TKL RAF Q6VAB6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9410 ADAMTS20::SSPN ENSG00000173157.18::ENSG00000123096.12 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAMTS20 ENSG00000173157.18 protein_coding - - chr12:43353866-43552203:- chr12:43432304:- chr12:43747669-43946006:- chr12:43826107:- SSPN ENSG00000123096.12 protein_coding + + chr12:26121991-26299290:+ chr12:26287483:+ chr12:26274924-26452223:+ chr12:26440416:+ chr12:43431711,chr12:43431713 chr12:26278427,chr12:26278425 NA NA chr12:43825514,chr12:43825516 chr12:26431360,chr12:26431358 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none ADAM-TS_Spacer_1(100%),ADAMTS_cysteine-rich_domain_2(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(100%),Reprolysin_family_propeptide(100%),Thrombospondin_type_1_domain(30%)| ADAM_CR_2(100%),ADAM_CR_3(100%),ADAM_spacer1(100%),Pep_M12B_propep(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_5(100%),TSP1_ADAMTS(6%),TSP_1(2%)| 2 0 1 19 0 ENST00000389420.8 ENST00000544231.1 upstream upstream none TGTATGAATAACTTTGGCCATCGTCTTGCTGACAATGAATGCCAAGAACTGTCCCGAGTGACGAGAGAGAATTGCAATGAATTTTCCTGTCCCAGTTGGGCTGCTAGTGAATGGAGCGAG|CCATTTGGAATGGACAGAATGAAACAGAAGTCAAAGAGCTGTCTACACGTCCTTCCCAAGCTATAATTAAGATGGAAGCTCATTTGCCATTCTGAGGATTGGTGCAATCAAGCATATGACAGCAAGATTTTGGAACATTTTTATCAGTTTTGGAACCACAGCTCCTC CMNNFGHRLADNECQELSRVTRENCNEFSCPSWAASEWSE|pfgmdrmkqksksclhvlpkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9414 CHST11::TXNRD1 ENSG00000171310.11::ENSG00000198431.18 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 961 TRUE 1670 TRUE 666 CHST11 ENSG00000171310.11 protein_coding + + chr12:104455295-104762014:+ chr12:104457514:+ chr12:104849073-105155792:+ chr12:104851292:+ TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104251527:+ chr12:104609557-104744085:+ chr12:104645305:+ chr12:104546889,chr12:104546887 chr12:104228993,chr12:104228991 NA NA chr12:104940667,chr12:104940665 chr12:104622771,chr12:104622769 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Glutaredoxin(100%),Pyridine_nucleotide-disulphide_oxidoreductase(100%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(100%) |FAD_binding_2(100%),GIDA(100%),Glutaredoxin(100%),HI0933_like(100%),NAD_binding_8(100%),Nse4-Nse3_bdg(100%),Nse4_C(100%),Pyr_redox(100%),Pyr_redox_2(100%),Pyr_redox_3(100%),Pyr_redox_dim(100%) 12 14 10 165 4116 ENST00000549260.5 ENST00000525566.6 downstream upstream duplicates(3) CTGAGCCTTGCTCAGCTCTGCCCCGCGCCTCCCGGGCTCCGGTCCGCGCGGCGGGGTCCCTGCTCCTGCGCCCCGGGCGCGCTTCCCGGACACCCCGGTCCCCGCAGCCAGGACAAAGCCATGAAGCCAGCGCTGCTGGAAGTGATGAGGATGAACAGAATCTGCCGGATGGTGCTGGCCACTTGCTTGGGATCCTTTATCCTGGTCATCTTCTATTTCCAAA|CTAAAGATCATCACCCTGGTAAAACTTTGCCAGAGAACCCAGCAGGATTCACCAGCACaGCCACTGCAGACTCCAGAGCCCTGCTTCAGGCCTATATAGAcGGTCACTCTGTGGTCATCTTCAGTAGGTCCACATGCACACGCTGTACTGAG___GTAAAGAAGTTATTTAAATCTCTGTGTGTTCCTTATTTTGTGCTTGAACTTGATCAAACAG___AGGACGGTCGGGCCCTGGAAGGAAC MKPALLEVMRMNRICRMVLATCLGSFILVIFYFQ|tKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 104995769|104995769 FALSE|FALSE 104732917|104742131 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE carbohydrate sulfotransferase 11 2 B-CLL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9415 CHST11::TXNRD1 ENSG00000171310.11::ENSG00000198431.18 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 962 TRUE 1670 TRUE 666 CHST11 ENSG00000171310.11 protein_coding + + chr12:104455295-104762014:+ chr12:104457529:+ chr12:104849073-105155792:+ chr12:104851307:+ TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104251527:+ chr12:104609557-104744085:+ chr12:104645305:+ chr12:104546889,chr12:104546887 chr12:104228993,chr12:104228991 NA NA chr12:104940667,chr12:104940665 chr12:104622771,chr12:104622769 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Glutaredoxin(100%),Pyridine_nucleotide-disulphide_oxidoreductase(100%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(100%) |FAD_binding_2(100%),GIDA(100%),Glutaredoxin(100%),HI0933_like(100%),NAD_binding_8(100%),Nse4-Nse3_bdg(100%),Nse4_C(100%),Pyr_redox(100%),Pyr_redox_2(100%),Pyr_redox_3(100%),Pyr_redox_dim(100%) 6 3 10 169 4116 ENST00000303694.6 ENST00000525566.6 downstream upstream duplicates(1) GCTGGGGGCTCCGAGAGCGGCCGCGAAGCGACTCCGATCCTCCCTCTGAGCCTTGCTCAGCTCTGCCCCGCGCCTCCCGGGCTCCGGTCCGCGCGGCGGGGTCCCTGCTCCTGCGCCCCGGGCGCGCTTCCCGGACACCCCGGTCCCCGCAGCCAGGACAAAGCCATGAAGCCAGCGCTGCTGGAAGTGATGAGGATGAACAGAATCTGCCGGATGGTGCTGGCCACTTGCTTGGGATCCTTTATCCTGGTCATCTTCTATTTCCAAAGTATGTTGCACCCAG|CTAAAGATCATCACCCTGGTAAAACTTTGCCAGAGAACCCAGCAGGATTCACCAGCACaGCCACTGCAGACTCCAGAGCCCTGCTTCAGGCCTATATAGAcGGTCACTCTGTGGTCATCTTCAGTAGGTCCACATGCACACGCTGTACTGAG___...AAAGAAGTTATTTAAATCTCTG MKPALLEVMRMNRICRMVLATCLGSFILVIFYFQSMLHP|aKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 104995769|104995769 FALSE|FALSE 104732917|104742131 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE carbohydrate sulfotransferase 11 2 B-CLL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9421 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1672 TRUE 667 GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69830152:+ chr2:70056792-70108516:+ chr2:70057284:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69781520:+ chr2:69871557-70054244:+ chr2:70008652:+ chr2:69835479,chr2:69835426,chr2:69835480 chr2:69721956,chr2:69721782,chr2:69721954 NA NA chr2:70062611,chr2:70062558,chr2:70062612 chr2:69949088,chr2:69948914,chr2:69949086 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none |Annexin(100%) |Annexin(100%) 4 4 6 170 2774 ENST00000282570.4 ENST00000477632.5 downstream upstream duplicates(1),mismatches(2) GGCCGGACACTGGAGACGATGCGGCGGGCCACGGATTCTGTTACTGTGCGGGCAGCCACAAGCGCAAGCGGAGCAGCGGGTCCTTCTGCTACTGTCACCCTGACTCGGAGACGGACGAGGATGAGGAGGAGGGGGACGAGCAGCAGCGGCTCCTCAACACCCCTCGAAG|AAGAACTTCTGCTTGGGTGGCTGAACTCTGATCTTGACCTAGAGTCATGGCCATG___GCAACCAAAGGAGGTACTGTCAAAGCTGCTTCAGGATTCAATGCCATGGAAG...___CACAAACAAC PDTGDDAAGHGFCYCAGSHKRKRSSGSFCYCHPDSETDEDEEEGDEQQRLLNTPRr|rtsawvael* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 TRUE|TRUE,TRUE|TRUE 70008652|70031665,70008652|70031665 TRUE|FALSE,TRUE|FALSE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9422 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1672 TRUE 667 GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69830152:+ chr2:70056792-70108516:+ chr2:70057284:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69804533:+ chr2:69871557-70054244:+ chr2:70031665:+ chr2:69835479,chr2:69835426,chr2:69835480 chr2:69721956,chr2:69721782,chr2:69721954 NA NA chr2:70062611,chr2:70062558,chr2:70062612 chr2:69949088,chr2:69948914,chr2:69949086 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Annexin(95%) |Annexin(39%) 2 3 1 170 4157 ENST00000282570.4 ENST00000409920.5 downstream upstream mismatches(1) CGGCGGGCCACGGATTCTGTTACTGTGCGGGCAGCCACAAGCGCAAGCGGAGCAGCGGGTCCTTCTGCTACTGTCACCCTGACTCGGAGACGGACGAGGATGAGGAGGAGGGGGACGAGCAGCAGCGGCTCCTCAACACCCCTCGAAG|GCACCGATGAAGACGCCATTATTAGCGTCCTTGCCTACCGCAACACCGCCCAGCGCCAGGAGATCAGGACAGCCTACAAGAGCACCATCGGCAGG___GACTTGATAGACGACCTGAAGTCAG...CTTCGAGCAG___GGAGCCGGCACTGATGAGGGCTGCCTAATTGAGATCCTGGCCTCCCGGACCCCTGAGGAGATCCGGCGCATAAGCCAAACCTACCAGCAGC AGHGFCYCAGSHKRKRSSGSFCYCHPDSETDEDEEEGDEQQRLLNTPRr|hr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 TRUE|TRUE,TRUE|TRUE 70008652|70031665,70008652|70031665 FALSE|TRUE,FALSE|TRUE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9425 KIAA0753::CHRNB1 ENSG00000198920.11::ENSG00000170175.11 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA0753 ENSG00000198920.11 protein_coding - - chr17:6578147-6640711:- chr17:6640637:- chr17:6481467-6544031:- chr17:6543957:- CHRNB1 ENSG00000170175.11 protein_coding + - chr17:7445061-7457710:+ chr17:7448868:- chr17:7348380-7361029:+ chr17:7352187:- chr17:6639754,chr17:6639756 chr17:7449713,chr17:7449712 NA NA chr17:6543074,chr17:6543076 chr17:7353032,chr17:7353031 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 0 4 0 26 43 ENST00000361413.8 unknown upstream downstream mismatches(4) CCCCCGTTGCCCGCCTCCCAGTAGCCGCGCCTCACCCTAGGCCAG|GAAAACCCTGCCTGGATTAAGGATAAAGAGTAAGAAGCTGAGCCAATGACAAAAGAGTAAGGAGCCCCTTCCCCCATTACCTGCATCTGGTGGCAGGTAGAAGACGAAGATGGCCAGAAGAGTGATGAGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9431 SFI1::DRG1 ENSG00000198089.16::ENSG00000185721.13 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SFI1 ENSG00000198089.16 protein_coding + + chr22:31488688-31618588:+ chr22:31546971:+ chr22:31884674-32014574:+ chr22:31942957:+ DRG1 ENSG00000185721.13 protein_coding + + chr22:31399604-31530634:+ chr22:31528690:+ chr22:31795590-31926620:+ chr22:31924676:+ chr22:31547947,chr22:31547941 chr22:31508705,chr22:31508695 NA NA chr22:31943933,chr22:31943927 chr22:31904691,chr22:31904681 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 2 18 3 117 88 ENST00000540643.5 ENST00000629688.1 downstream upstream duplicates(1) ATTTTACTATGAGCAGCGATTACTACGGAAGGTCTTCGAAGAATGGAAAGAGGAGTGGTGGGTTTTCCAGCACGAGTGGAAACTCTGTGTTCGAGCTGACTGTCACTACAG|GTATTTTAAGGATGGTGCAGTTAAGAAACCTTATTCTGCAAAGACACTGTCCAACAAGAAGTCTTCTGCATCCTTTGGGATCCGGAGGGAGTTACCTAGTACCAGTCATCTAGTGCAGTATCGTGGCACACATACTTGTACCCGACAGGGCCGGTTAAGAGAACTGCGCATCAG___ATGCGTGGCCAG FYYEQRLLRKVFEEWKEEWWVFQHEWKLCVRADCHYr|YFKDGAVKKPYSAKTLSNKKSSASFGIRRELPSTSHLVQYRGTHTCTRQGRLRELRIrcva NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9471 DERPC::TANGO6 ENSG00000286140.2::ENSG00000103047.8 NCIH1876 SRR8615614 SRR8652039 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DERPC ENSG00000286140.2 protein_coding - - chr16:69118010-69132588:- chr16:69132483:- chr16:69151913-69166491:- chr16:69166386:- TANGO6 ENSG00000103047.8 protein_coding + - chr16:68843531-69085182:+ chr16:69002221:- chr16:68877434-69119085:+ chr16:69036124:- chr16:69125085,chr16:69125146,chr16:69125169,chr16:69125175,chr16:69125205 chr16:69018318,chr16:69018392,chr16:69018435,chr16:69018435,chr16:69018448 NA NA chr16:69158988,chr16:69159049,chr16:69159072,chr16:69159078,chr16:69159108 chr16:69052221,chr16:69052295,chr16:69052338,chr16:69052338,chr16:69052351 NA NA sense antisense unknown intron intron deletion/read-through/5'-5' high none none none 1 32 4 589 71 ENST00000519520.7 unknown upstream downstream duplicates(8),mismatches(1) GCGGCGACGGCGGCGGGAGGTTCGGTTGTCGCCCGTTGGCCGCGCGGCGCCGCGCTCGGCGGCCGCCATTGCAGG|CCGTTTTCTTGCTACCCTTGATGCTCACATGAGAGGACCTATGGTAATTTCTGACAGCCTGGGACTCCTTGGGAGAAAAATAGAAGATGTCACAGATCCTGTTTTGGAAGAAAAAGCTGTTTTCCTCATGGAACTCCAAGAATT___GTGTGAACTTGTATCCCAGGCTGGCCAGTTAGGATCTTCCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9472 CHTF8::TANGO6 ENSG00000168802.14::ENSG00000103047.8 NCIH1876 SRR8615614 SRR8652039 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHTF8 ENSG00000168802.14 protein_coding - - chr16:69118010-69132588:- chr16:69132483:- chr16:69151913-69166491:- chr16:69166386:- TANGO6 ENSG00000103047.8 protein_coding + - chr16:68843531-69085182:+ chr16:69002221:- chr16:68877434-69119085:+ chr16:69036124:- chr16:69125085,chr16:69125146,chr16:69125169,chr16:69125175,chr16:69125205 chr16:69018318,chr16:69018392,chr16:69018435,chr16:69018435,chr16:69018448 NA NA chr16:69158988,chr16:69159049,chr16:69159072,chr16:69159078,chr16:69159108 chr16:69052221,chr16:69052295,chr16:69052338,chr16:69052338,chr16:69052351 NA NA sense antisense unknown intron intron deletion/read-through/5'-5' high none none none 1 32 4 589 71 ENST00000448552.7 unknown upstream downstream duplicates(8),mismatches(1) GCGGCGACGGCGGCGGGAGGTTCGGTTGTCGCCCGTTGGCCGCGCGGCGCCGCGCTCGGCGGCCGCCATTGCAGG|CCGTTTTCTTGCTACCCTTGATGCTCACATGAGAGGACCTATGGTAATTTCTGACAGCCTGGGACTCCTTGGGAGAAAAATAGAAGATGTCACAGATCCTGTTTTGGAAGAAAAAGCTGTTTTCCTCATGGAACTCCAAGAATT___GTGTGAACTTGTATCCCAGGCTGGCCAGTTAGGATCTTCCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9496 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 NCIH1876 SRR8615614 SRR8652039 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |ZIP_Zinc_transporter(34%) |Zip(0%) 2 0 0 134 36 ENST00000648631.1 ENST00000255559.8 upstream downstream none TAGGCAGGCGCCCACCGTAAGCCTCCCGGGCCTTGTGAACCTGCAAACCCAAGTCTGAGAGACGATCCGCCTTCAGCGCTTTCCAGCTTGGCAGAGAGGCT...AGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCT...CCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGcCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9504 HTT::POLN ENSG00000197386.14::ENSG00000130997.16 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HTT ENSG00000197386.14 protein_coding + + chr4:3041363-3243957:+ chr4:3107423:+ chr4:3043090-3245684:+ chr4:3109150:+ POLN ENSG00000130997.16 protein_coding - + chr4:2071918-2242121:- chr4:2197201:+ chr4:2073645-2243848:- chr4:2198928:+ chr4:3107942 chr4:2185924 NA NA chr4:3109669 chr4:2187651 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 15 9 10 99 30 ENST00000680956.1 unknown downstream upstream duplicates(2) AGTTTGCGTGCTGCCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCTCAGAAATGCAG___GCCTTACCTGGTGAACCTTCTGCCGTGCCTGACTCGAACAAGCAAGAGACCCGAAGAATCAGTCCAGGAGACCTTGGCTGCAGCTGTTCCCAAAATTATGGCTTCTTTTGGCAATTTTGCAAATGACAATGAAATTAAG|GCCAGCTCTGGGTGCTGCACAGAAAACAGACTGAAGGGGCAGGTGGAAGCAGGAGTCCAATGTGGAAGTTCTTGTGATCCAGTAGGAG___ACAGCTGATCTGTG SLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIK|assgcctenrlkgqveagvqcgsscdpvgds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9505 HTT::ENSG00000290263 ENSG00000197386.14::ENSG00000290263.1 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HTT ENSG00000197386.14 protein_coding + + chr4:3041363-3243957:+ chr4:3107423:+ chr4:3043090-3245684:+ chr4:3109150:+ ENSG00000290263 ENSG00000290263.1 protein_coding - + chr4:2078998-2242276:- chr4:2197201:+ chr4:2080725-2244003:- chr4:2198928:+ chr4:3107942 chr4:2185924 NA NA chr4:3109669 chr4:2187651 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 15 9 10 99 30 ENST00000680956.1 unknown downstream upstream duplicates(2) AGTTTGCGTGCTGCCCTGTGGAGGTTTGCTGAGCTGGCTCACCTGGTTCGGCCTCAGAAATGCAG___GCCTTACCTGGTGAACCTTCTGCCGTGCCTGACTCGAACAAGCAAGAGACCCGAAGAATCAGTCCAGGAGACCTTGGCTGCAGCTGTTCCCAAAATTATGGCTTCTTTTGGCAATTTTGCAAATGACAATGAAATTAAG|GCCAGCTCTGGGTGCTGCACAGAAAACAGACTGAAGGGGCAGGTGGAAGCAGGAGTCCAATGTGGAAGTTCTTGTGATCCAGTAGGAG___ACAGCTGATCTGTG SLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIK|assgcctenrlkgqveagvqcgsscdpvgds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9506 ZFAT::PKN2-AS1 ENSG00000066827.16::ENSG00000237505.8 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134637461:- chr8:135490031-135725292:- chr8:135649704:- PKN2-AS1 ENSG00000237505.8 lncRNA - - chr1:87620803-88685204:- chr1:87688728:- chr1:88086486-89150887:- chr1:88154411:- chr8:134626043,chr8:134626046 chr1:87838215,chr1:87838215 NA NA chr8:135638286,chr8:135638289 chr1:88303898,chr1:88303898 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none AT_hook(100%)| 3 1 3 11 11 ENST00000523243.5 ENST00000645056.1 upstream downstream none AAATGTTGTAACCTCTTCTCACCAAATCAGTCGGAACTCCTCTCCCACGTTTCAGAGAAGCACATGGAAGAAGGGGTTAATGTTGATGAGATTATTATTCC...AGAAAACATCGTGAGTCCGACTGAGGACAGCtCGCTGGCTCCGGAGGAAGGGAACAGCCTGCCTCCAAGCAGCTTGGAGTGTAGCAAGTGCTGTCGGAAGTTCTCCAACACGCGCCAGCTGCGGAAGCACATCTGCATTATCGTGCTGAATTTGGGTGAGGAGGAAGGAGAAGCAG|GCAAGTTCAGCTGTATTGTGGAAAAAAGGATTTAAGCAAAGATTGAACCTGGTGAAATGCGGATAGCTGGTCCACTTGAGGACATTCCATTTCTTCGCTTCTCCAATGGAGCAGGTTTCTGCACGCAGCTCACATGCTTATATGTATGGTGGC...TTTCTGACAGGGAAtGATTGTTCTGCAACTCATGCGGAGCACCAAGGGTGCTGGAGACTCAGGTCCATAGAgCCCAGCgTTACCATACGGATGTGCATC ENIVSPTEDSsLAPEEGNSLPPSSLECSKCCRKFSNTRQLRKHICIIVLNLGEEEGEA|gkfscivekri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9507 GXYLT1::ENSG00000270926 ENSG00000151233.11::ENSG00000270926.1 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GXYLT1 ENSG00000151233.11 protein_coding - - chr12:42081845-42144874:- chr12:42105818:- chr12:42475647-42538676:- chr12:42499620:- ENSG00000270926 ENSG00000270926.1 unprocessed_pseudogene - + chr12:31105105-31106830:- chr12:31106426:+ chr12:31258039-31259764:- chr12:31259360:+ chr12:42101598,chr12:42101601 chr12:31106033,chr12:31106030 NA NA chr12:42495400,chr12:42495403 chr12:31258967,chr12:31258964 NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' high none Glycosyl_transferase_family_8(67%)| Glyco_transf_8(31%)| 1 2 4 92 8 ENST00000398675.8 unknown upstream upstream none AGAACATGAGGAACCTCGAATAGGATGGTATAATCGCTTTGCTAGGCATCCATATTATGGAAAAACTGGAGTAAACTCTGGAGTTATGTTGATGAACATGACTCGAATGAGAAGGAAGTATTTCAAG|CACCAGCCAGTCCGTCTGGGAAGACAGACTTCTTGTATCTACAGGGGCGACGTGGAGGTCAGGCAAGCCGGCACCTGCTGTCCTGGGACCATGTTCCTGACCTACCTCTCCCATGTCATCAtGGACACTGCACTGAGGGGTCCCAGGCCACTGAGCCAAGgCACCCTtGTCACCTTCTGGCTCCCACCTCTGTGCTGCACCTGAGTGTGA EHEEPRIGWYNRFARHPYYGKTGVNSGVMLMNMTRMRRKYFK|hqpvrlgrqtsciyrgdvevrqagtccpgtmfltylshvimdtalrgprplsqgtlvtfwlpplcct* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9508 POLN::ADD1 ENSG00000130997.16::ENSG00000087274.19 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POLN ENSG00000130997.16 protein_coding - - chr4:2071918-2242121:- chr4:2229099:- chr4:2073645-2243848:- chr4:2230826:- ADD1 ENSG00000087274.19 protein_coding + + chr4:2843844-2930076:+ chr4:2926014:+ chr4:2845571-2931803:+ chr4:2927741:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none HAUS-augmin3(100%)| 2 3 2 15 168 ENST00000511885.6 ENST00000683351.1 upstream upstream low_entropy(1),mismatches(1) CATTGGTAGGCTTTGATCTCTGTAATACACCGCTCTCCAGTGTTGCTCAGAAGATTATGTCTGCTATGCATTCAGGTGATTTAGTGGATTCTAAGACTTGGGGAAAGAGTACAGAGA|AGAATCTGGACGAGGCTAGAGAACAGAAAGAAAAGAGTCCTCCAGACCAGCCTGCGGTCCCCCACCCGCCTCCCAGCACTCCCATCAAGCTGGAGGAAG___ACCTTGTGCCGGAGCCGACTACTGGAGATGACAGTG LVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTE|kNLDEAREQKEKSPPDQPAVPHPPPSTPIKLEEDLVPEPTTGDDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9509 ENSG00000290263::ADD1 ENSG00000290263.1::ENSG00000087274.19 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000290263 ENSG00000290263.1 protein_coding - - chr4:2078998-2242276:- chr4:2229099:- chr4:2080725-2244003:- chr4:2230826:- ADD1 ENSG00000087274.19 protein_coding + + chr4:2843844-2930076:+ chr4:2926014:+ chr4:2845571-2931803:+ chr4:2927741:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none HAUS-augmin3(100%)| 2 3 2 15 168 ENST00000672725.1 ENST00000683351.1 upstream upstream low_entropy(1),mismatches(1) CATTGGTAGGCTTTGATCTCTGTAATACACCGCTCTCCAGTGTTGCTCAGAAGATTATGTCTGCTATGCATTCAGGTGATTTAGTGGATTCTAAGACTTGGGGAAAGAGTACAGAGA|AGAATCTGGACGAGGCTAGAGAACAGAAAGAAAAGAGTCCTCCAGACCAGCCTGCGGTCCCCCACCCGCCTCCCAGCACTCCCATCAAGCTGGAGGAAG___ACCTTGTGCCGGAGCCGACTACTGGAGATGACAGTG LVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTE|kNLDEAREQKEKSPPDQPAVPHPPPSTPIKLEEDLVPEPTTGDDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9511 RNF170::ENSG00000253288 ENSG00000120925.16::ENSG00000253288.2 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF170 ENSG00000120925.16 protein_coding - - chr8:42849637-42897290:- chr8:42870004:- chr8:42704780-42752433:- chr8:42725147:- ENSG00000253288 ENSG00000253288.2 lncRNA - - chr8:137809444-138083657:- chr8:137837885:- chr8:138821687-139095900:- chr8:138850128:- chr8:42865549 chr8:137844086 NA NA chr8:42720692 chr8:138856329 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Zinc_finger__C3HC4_type_(RING_finger)(49%)| zf-C3HC4(1%),zf-C3HC4_3(0%),zf-C3HC4_4(1%),zf-RING_2(1%),zf-RING_UBOX(1%)| 0 3 1 193 12 ENST00000319104.7 ENST00000657186.1 upstream downstream duplicates(2) CTGGTATATGCACTTTTCAG___AAATGTACATCAAAAtATTCACCCAGAAAACCAGGAGCTAGTAAGGGTACTTCGAGAACAGCTTCAAACAGAACAG___GATGC...CCTGCACCAAGCCTCCTTCCCGGTGGAGACCAACTGTGGACATCTTTTTTGTG|ATGTACTGCAGTGCCATGCTGGGTATCTTAAAGAACAAGGCATTGTCCTCTGCAGACACCCAGGCTGCAGACTTCAAGGACTGGAAGAAGAGCTTTGCGTCTTCTCTCTTCTCTATACAGACACAATCTGTAGCAGCAAATGTGTTACAGATGGACAGAAGCTGGG___CTATTAGGGGCCTACAGTGCATCAGGCATGGATCCATGTTAGAAAATTGTCCC LHQASFPVETNCGHLFC|dvlqchagylkeqgivlcrhpgcrlqgleeelcvfsllytdticsskcvtdgqklgy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4469 chr8:42896197-42896275:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9515 CDC20B::ARL15 ENSG00000164287.13::ENSG00000185305.12 NCIH1869 SRR8615615 SRR8652040 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC20B ENSG00000164287.13 protein_coding - - chr5:55112971-55173177:- chr5:55133412:- chr5:54408799-54469005:- chr5:54429240:- ARL15 ENSG00000185305.12 protein_coding - + chr5:53883942-54310582:- chr5:54098385:+ chr5:53179772-53606412:- chr5:53394215:+ chr5:55130040,chr5:55130044 chr5:54095648,chr5:54095644 NA NA chr5:54425868,chr5:54425872 chr5:53391478,chr5:53391474 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none AhpC-TSA(100%),GSHPx(100%)| 2 1 0 3 6 ENST00000381375.7 unknown upstream upstream duplicates(1) GAAAAATGCAGCTCTGTGAGCAATCCGAATGTGTTTGGAAAG___GCTGCAAAGATGGAGTCAGAGATGAATCCTTCCATCTTAAAAGTTCTGGTGATATAAACGATTCCATACTCCAACCAGAGGTGAAGATTCATATTACTGGTCTTCGAAATGACTACT|ACATCGCCTTTCTCCCACTTTCTGTCTAGCCATCCTCCGTCAAAGCACACAAAATGGCCACTGTAACCCTGCATCACTGCTCATTAGATCACAG KMQLCEQSECVWKGCKDGVRDESFHLKSSGDINDSILQPEVKIHITGLRNDY|yiaflplsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-449a,hsa-mir-449b,hsa-mir-449c chr5:55170532-55170622:-,chr5:55170646-55170742:-,chr5:55172262-55172353:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9532 LHFPL3::LINC01004 ENSG00000187416.13::ENSG00000228393.6 COLO829 SRR8615617 SRR8639230 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LHFPL3 ENSG00000187416.13 protein_coding + - chr7:104328603-104908561:+ chr7:104852324:- chr7:103969051-104549008:+ chr7:104492771:- LINC01004 ENSG00000228393.6 lncRNA - - chr7:104950315-105013068:- chr7:104953906:- chr7:104590762-104653515:- chr7:104594353:- chr7:104844619,chr7:104844623 chr7:104971855,chr7:104971856 NA NA chr7:104485066,chr7:104485070 chr7:104612302,chr7:104612303 NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 7 9 9 41 30 unknown ENST00000450686.1 upstream downstream mismappers(1),mismatches(1) AACAGGATTCTTCCTAACCAACCAGGACAGCTCTGTGAAGACTGGCTTTGCTCTCTGGACAAAAGCCTTCTCTTCTCTTTACTACTGCCCTACTTTCAGCATGGCCCTCCTCCTCCACCTCCCTTTCCTGCCTAGTGTCCTGATCCCCACTGCTGGGGGCAGCAGGCTGCACATTTCTGGACACTGA|GTGGACGCAAAGGTGTTAAATGAGGTTGAATATATTGACCAGAAAAGAAAATATTATAGTCCTTTGTTGAAGAAGAGTTTTCTCATACTGGAAAGAAAAAAAATAAAAGAAAGAAACTTCAAAAACTTCATGCTGCTTTCTGAAGTACTCCAGCCAAAGAAAATAATTCAGGTATCAAGTTGGACTAGCTCAGATGACTACAAAATG___GTTCAAGCGATTCTCCTGCCTC?GC...TCTCTTGAAC?TGTGATCT?CCTGCCTCAGCC...___AATGGGGATGAAAGTGGACTACTACCTCATGGCATGTTTTGAGGATGAAATGAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9538 NUSAP1::ENSG00000285920 ENSG00000137804.14::ENSG00000285920.2 COLO829 SRR8615617 SRR8639230 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUSAP1 ENSG00000137804.14 protein_coding + + chr15:41320794-41381050:+ chr15:41333050:+ chr15:41612992-41673248:+ chr15:41625248:+ ENSG00000285920 ENSG00000285920.2 protein_coding + + chr15:41284007-41380996:+ chr15:41332156:+ chr15:41576205-41673194:+ chr15:41624354:+ chr15:41336313,chr15:41336310 chr15:41329099,chr15:41329093 NA NA chr15:41628511,chr15:41628508 chr15:41621297,chr15:41621291 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |Nucleolar_and_spindle-associated_protein(100%) Yippee-Mis18(100%)|NUSAP(100%),Yippee-Mis18(0%) 13 5 12 291 29 ENST00000668273.1 ENST00000661438.1 downstream upstream duplicates(1),mismatches(2) GGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGGATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAGCCAAGAGTCTGGGTCTCCGGGCCAACCTGAGG|GTGGTTCTCCGCCACCCGGTGGAGAAAGCGGGAACACCCTCTCGGGCTAGCCTCTGCCTTTCCCGAACGCTTCACTGCACTCACTGGAGAAGACCACGGCCCCGAGGGACCGCGACAGGTCCCAGGCGAGGTGCACCGAGTCGGCGAGCACTGCGTGACACTGTGCGCACTGGAACACAGCGCACCTCTCAGGCTGCAGCCAAGACGGCAGCTGCGGGCCGGCGG MIIPSLEELDSLKYSDLQNLAKSLGLRANLR|vvlrhpvekagtpsraslclsrtlhcthwrrprprgtatgprrgapsrralrdtvrtgtqrtsqaaaktaaagr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9539 ENSG00000285920::NUSAP1 ENSG00000285920.2::ENSG00000137804.14 COLO829 SRR8615617 SRR8639230 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285920 ENSG00000285920.2 protein_coding + + chr15:41284007-41380996:+ chr15:41333050:+ chr15:41576205-41673194:+ chr15:41625248:+ NUSAP1 ENSG00000137804.14 protein_coding + + chr15:41320794-41381050:+ chr15:41332156:+ chr15:41612992-41673248:+ chr15:41624354:+ chr15:41336313,chr15:41336310 chr15:41329099,chr15:41329093 NA NA chr15:41628511,chr15:41628508 chr15:41621297,chr15:41621291 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |Nucleolar_and_spindle-associated_protein(100%) Yippee-Mis18(100%)|NUSAP(100%),Yippee-Mis18(0%) 13 5 12 291 29 ENST00000661438.1 ENST00000668273.1 downstream upstream duplicates(1),mismatches(2) GGATTTGAACCGCGCTGACGAAGTTTGGTGATCCATCTTCCGAGTATCGCCGGGATTTCGAATCGCGATGATCATCCCCTCTCTAGAGGAGCTGGACTCCCTCAAGTACAGTGACCTGCAGAACTTAGCCAAGAGTCTGGGTCTCCGGGCCAACCTGAGG|GTGGTTCTCCGCCACCCGGTGGAGAAAGCGGGAACACCCTCTCGGGCTAGCCTCTGCCTTTCCCGAACGCTTCACTGCACTCACTGGAGAAGACCACGGCCCCGAGGGACCGCGACAGGTCCCAGGCGAGGTGCACCGAGTCGGCGAGCACTGCGTGACACTGTGCGCACTGGAACACAGCGCACCTCTCAGGCTGCAGCCAAGACGGCAGCTGCGGGCCGGCGG MIIPSLEELDSLKYSDLQNLAKSLGLRANLR|vvlrhpvekagtpsraslclsrtlhcthwrrprprgtatgprrgapsrralrdtvrtgtqrtsqaaaktaaagr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9552 CDC37::IL27RA ENSG00000105401.9::ENSG00000104998.4 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE TRUE 966 TRUE 1690 TRUE 668 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- IL27RA ENSG00000104998.4 protein_coding + + chr19:14031762-14053218:+ chr19:14042453:+ chr19:14142574-14164030:+ chr19:14153265:+ chr19:10394013,chr19:10394017 chr19:14041349,chr19:14041345 NA NA chr19:10504689,chr19:10504693 chr19:14152161,chr19:14152157 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|Fibronectin_type_III_domain(100%) CDC37_M(20%),CDC37_N(100%)|fn3(100%) 150 193 281 6198 748 ENST00000593124.1 ENST00000263379.4 upstream upstream duplicates(130),low_entropy(4),mismatches(73) ACACAAGACCTTCGTGGAAAAATACGAGAAACAGATCAAGCACTTTG___GCATGCTTCGCCGCTGGGATGACAGCCAAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCACCAGACAATCGTCATGCAATTTATCCTGGAGCTGGCCAAGAGCCTAAAGGTGGACCCCCGGGCCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|CTGGAACCGGAGCTGAAGACCATACCCCTGACCCCTGTTGAGATCCAAGATTTGGAGCTAGCCACTGGCTACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTG___CTCCAAAAGATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGAAG___GCCCCAGGGCCCTGTGTGCAGGTGAGCTACAAAGTCTGG HKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIK|LEPELKTIPLTPVEIQDLELATGYKVYGRCRMEKEEDLWGEWSPILSFQTPPSAPKDVWVSGNLCGTPGGEEPLLLWKAPGPCVQVSYKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9553 CDC37::IL27RA ENSG00000105401.9::ENSG00000104998.4 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1690 TRUE 668 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- IL27RA ENSG00000104998.4 protein_coding + + chr19:14031762-14053218:+ chr19:14046154:+ chr19:14142574-14164030:+ chr19:14156966:+ chr19:10394013,chr19:10394017 chr19:14041349,chr19:14041345 NA NA chr19:10504689,chr19:10504693 chr19:14152161,chr19:14152157 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|Fibronectin_type_III_domain(100%) CDC37_M(20%),CDC37_N(100%)|fn3(100%) 1 0 14 6198 768 ENST00000593124.1 ENST00000263379.4 upstream upstream duplicates(2),mismatches(2) GCCAAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCACCAGACAATCGTCATGCAATTTATCCTGGAGCTGGCCAAGAGCCTAAAGGTGGACCCCCGGGCCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|GCCCCAGGGCCCTGTGTGCAGGTGAGCTACAAAGTCTGGTTCTGGGTTGGAGGTCGTGAGCTGAGTCCAGAAGGAATTACCTGCTGCTGCTCCCTAATTCCCAGTGGGGCGGAGTGGGCCAGGGTGTCCGCTGTCAACGCCACAAGCTGGGAGCCTCTCACCAACCTCTCTTTGGTCTGCTTGG___ATT QKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIK|APGPCVQVSYKVWFWVGGRELSPEGITCCCSLIPSGAEWARVSAVNATSWEPLTNLSLVCLD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9554 TRPC4AP::ACSBG2 ENSG00000100991.12::ENSG00000130377.14 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE TRUE 967 TRUE 1691 TRUE 669 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- ACSBG2 ENSG00000130377.14 protein_coding + + chr19:6135247-6193094:+ chr19:6190584:+ chr19:6135258-6193105:+ chr19:6190595:+ chr20:35025165,chr20:35025165,chr20:35025168 chr19:6190342,chr19:6190346,chr19:6190339 NA NA chr20:33612968,chr20:33612968,chr20:33612971 chr19:6190353,chr19:6190357,chr19:6190350 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 105 98 255 1454 312 ENST00000252015.3 ENST00000588304.5 upstream upstream duplicates(113),low_entropy(1),mismatches(37) CACCATTTCAGAGATGGATACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG___CGGCCCTTCTCAGCATTCCTGGCTTTGTTGAGCGGCTTTGCAAACTGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACACATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAAG|GTCCAATGATGAAACTTAAGAGACATTTTGTAGCCCAGAAATACAAAAAACAAATTGATCACATGTACCACTGACTGCTTTGATGGAGCTGCTCTCAGCTGTTCTGATG___CCTTCAGCAGGAAGACCTCATTGCAATAAGTGAAATGCTGCTCTAGGTAGAAGCTCTCCCTGCTGTTTTTAAGAAGCCACATTCCTCATTGGTCAGTTTCTTGATTGTTCGTCTGTTGGAGAGGTGCTCCCTAGAAGAACCTG TISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ|gPMMKLKRHFVAQKYKKQIDHMYH* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9555 TRPC4AP::ACSBG2 ENSG00000100991.12::ENSG00000130377.14 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1691 TRUE 669 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- ACSBG2 ENSG00000130377.14 protein_coding + + chr19:6135247-6193094:+ chr19:6192668:+ chr19:6135258-6193105:+ chr19:6192679:+ chr20:35025165,chr20:35025165,chr20:35025168 chr19:6190342,chr19:6190346,chr19:6190339 NA NA chr20:33612968,chr20:33612968,chr20:33612971 chr19:6190353,chr19:6190357,chr19:6190350 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none none none 43 56 160 1454 701 ENST00000252015.3 ENST00000588304.5 upstream upstream duplicates(66),mismatches(33) TCTGGCTGTCACCATTTCAGAGATGGATACAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG___CGGCCCTTCTCAGCATTCCTGGCTTTGTTGAGCGGCTTTGCAAACTGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACACATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAAG|CCTTCAGCAGGAAGACCTCATTGCAATAAGTGAAATGCTGCTCTAGGTAGAAGCTCTCCCTGCTGTTTTTAAGAAGCCACATTCCTCATTGGTCAGTTTCTTGATTGTTCGTCTGTTGGAGAGGTGCTCCCTAGAAGAACCTGCCATACGTTTCAAAGCAATAAAATCACTGTATATCTTTCTAAGGACCTTCAAGTCATGACTCCAGGGAAGCCTATTGGGAAGTCTACTAAAAACTGCCTGATTTACAAGAAAGACCTGAA LAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ|afsrktslq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9556 FREM1::MPDZ ENSG00000164946.20::ENSG00000107186.17 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE TRUE 968 TRUE 1692 TRUE 670 FREM1 ENSG00000164946.20 protein_coding - - chr9:14737152-14910995:- chr9:14841447:- chr9:14737150-14910993:- chr9:14841445:- MPDZ ENSG00000107186.17 protein_coding - - chr9:13105706-13279692:- chr9:13162795:- chr9:13105705-13279691:- chr9:13162794:- chr9:14830106,chr9:14830112 chr9:13166558,chr9:13166561 NA NA chr9:14830104,chr9:14830110 chr9:13166557,chr9:13166560 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cadherin-like(22%)|PDZ_domain(55%),Unstructured_region_10_on_multiple_PDZ_protein(100%) Cadherin_3(2%),Frem_N(100%)|MPDZ_u10(100%),PDZ(76%),PDZ_6(89%) 22 41 49 1367 101 ENST00000380875.7 ENST00000319217.12 upstream downstream duplicates(21),mismatches(5) ATCCTGATCCAGGGATCCATGCTGCGAGCTTCAGATGTGGACGCCAGTGATGACTACATCTTCTTCAATATCACAAAGCCTCCACAGGCTGGGGAGATCATGAAGAAGCCAGGGCCAGGACTGATAG___GCTATCCTGTCCATGGCTTCCTTCAGAGGGATTTGTTTAATGGAATCATTTATTATCGTCATTTTGGTGGAGAAATCTTTGAAGATTCTTTTCAATTTGTCCTGTGGGACAGCCATGAACCTCCAAATCTTTCAGTGCCACAG|AATTACTTATGTGCCTGCAGAACATTTGGAAGAGTTCAAAATAAGCTTGGGACAACAATCTGGAAGAGTAATGGCACTGGATATTTTTTCTTCATACACTGGCAG___AGACATTCCAGAATTACCAGAGCGAGAAGAGGGAGAGGGTGAAGAAAGCGAACTTCAAAACACAGCATATAGCAATTGGAATCAGCCCAGGCG___GGTGGAACTCTGGAGAGAACCAAGCAAATCCTTAGGCATCAGCATTGTTGGTGGACGAGGGATGGGGAGTCGGCTAAGCAATGGAGAAGTGATGAGGGGCATTTTCATCAAACATGTTCTGGAAGATAGTCCAGCTGGCAAAAATG ILIQGSMLRASDVDASDDYIFFNITKPPQAGEIMKKPGPGLIGYPVHGFLQRDLFNGIIYYRHFGGEIFEDSFQFVLWDSHEPPNLSVPQ|nylcacrtfgrvqnklgttiwksngtgyfffihwqrhsritrarrgrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9557 FREM1::MPDZ ENSG00000164946.20::ENSG00000107186.17 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1692 TRUE 670 FREM1 ENSG00000164946.20 protein_coding - - chr9:14737152-14910995:- chr9:14841447:- chr9:14737150-14910993:- chr9:14841445:- MPDZ ENSG00000107186.17 protein_coding - - chr9:13105706-13279692:- chr9:13140149:- chr9:13105705-13279691:- chr9:13140148:- chr9:14830106,chr9:14830112 chr9:13166558,chr9:13166561 NA NA chr9:14830104,chr9:14830110 chr9:13166557,chr9:13166560 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none Cadherin-like(22%)|PDZ_domain(47%),Unstructured_region_10_on_multiple_PDZ_protein(100%) Cadherin_3(2%),Frem_N(100%)|MPDZ_u10(100%),PDZ(67%),PDZ_6(40%) 0 1 0 1367 123 ENST00000380875.7 ENST00000319217.12 upstream downstream none CTTTTCAATTTGTCCTGTGGGACAGCCATGAACCTCCAAATCTTTCAGTGCCACAG|GCACCCAGTCAGTCAGAGTCAGAGCCAGAGAAGGCTCCATTGTGC...TGCCGAAATGGGTAGTGATCACACACAGTCATCTGCAAGCAAAATCTCACAAGATGTGGACAAAGAGGATGAGTTTGGTTACAGCTGGA___AAAATATCAGAG FQFVLWDSHEPPNLSVPQ|APSQSESEPEKAPL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9558 CATSPERD::ENSG00000276627 ENSG00000174898.16::ENSG00000276627.3 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1693 TRUE 671 CATSPERD ENSG00000174898.16 protein_coding + + chr19:5720637-5778734:+ chr19:5754245:+ chr19:5720648-5778745:+ chr19:5754256:+ ENSG00000276627 ENSG00000276627.3 lncRNA + + chr20:60755001-60767279:+ chr20:60767222:+ chr20:59330058-59342335:+ chr20:59342278:+ chr19:5755325,chr19:5755324 chr20:60767133,chr20:60767129 NA NA chr19:5755336,chr19:5755335 chr20:59342189,chr20:59342185 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cation_channel_sperm-associated_protein_subunit_delta(53%)| CATSPERD(54%)| 37 29 28 79 84 ENST00000381624.4 ENST00000613711.1 downstream upstream duplicates(20),mismatches(1) TTTGCAGACCAATACATCTGGTCAGAAGACGTGGCCCTGATGTTCAGGAGCCCAGGGACTCTGGAAATACTGACCCCACTGCGTGACACAGCCTTTCCAGCTTTTGATTTCCAGAAGTGCCTCGTGAATATCCAGGCGCTTCTCATGGACCCTGAACTCCACGTTGGAAAGTGCAAG___ATAGAGTTTCTGACAGGAGAATTTATATACAGGATGTATACCATTGACATGCACAGCCAGCTGGAATTGACTGCTTCGTTGATACCCCAGCCAGGCACATCCCTGATTCCTCTG|GTGCTTCCAGGAACATTCTTGTGCAAGACCGTGTGAGAGTATCTCCAAGATAGACAAGTGGAAGTGAAATTCTGGGCCATAGTGGATGAACACTTGCCAAGAGGTGTTGACAAATTAGTCTTAAATGAACCTGTACTGCATTTTAAGGCCTGGGAGCTCTTAGTGGCCCCATCCTTTCCAAAGCTTGTGTGGTTGGCCGAGTAATGTCTTCCAAGATGTCCAATTCCCAATCCCTGGAACTTCTGAATGCTAGCCTGTATGACAAAAG FADQYIWSEDVALMFRSPGTLEILTPLRDTAFPAFDFQKCLVNIQALLMDPELHVGKCKIEFLTGEFIYRMYTIDMHSQLELTASLIPQPGTSLIPL|vlpgtflcktv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9559 CATSPERD::ENSG00000276627 ENSG00000174898.16::ENSG00000276627.3 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1693 TRUE 671 CATSPERD ENSG00000174898.16 protein_coding + + chr19:5720637-5778734:+ chr19:5751823:+ chr19:5720648-5778745:+ chr19:5751834:+ ENSG00000276627 ENSG00000276627.3 lncRNA + + chr20:60755001-60767279:+ chr20:60767222:+ chr20:59330058-59342335:+ chr20:59342278:+ chr19:5755325,chr19:5755324 chr20:60767133,chr20:60767129 NA NA chr19:5755336,chr19:5755335 chr20:59342189,chr20:59342185 NA NA sense sense stop-codon CDS/splice-site exon/splice-site translocation high none Cation_channel_sperm-associated_protein_subunit_delta(47%)| CATSPERD(50%)| 1 4 11 145 84 ENST00000381624.4 ENST00000613711.1 downstream upstream duplicates(7) GCCTGTTGTTTTCCCATAATGCAG___TTTGCAGACCAATACATCTGGTCAGAAGACGTGGCCCTGATGTTCAGGAGCCCAGGGACTCTGGAAATACTGACCCCACTGCGTGACACAGCCTTTCCAGCTTTTGATTTCCAGAAGTGCCTCGTGAATATCCAGGCGCTTCTCATGGACCCTGAACTCCACGTTGGAAAGTGCAAG|GTGCTTCCAGGAACATTCTTGTGCAAGACCGTGTGAGAGTATCTCCAAGATAGACAAGTGGAAGTGAAATTCTGGGCCATAGTGGATGAACACTTGCCAAGAGGTGTTGACAAATTAGTCTTAAATGAACCTGTACTGCATTTTAAGGCCTGGGAGCTCTTAGTGGCCCCATCCTTTCCAAAGCTTGTGTGGTTGGCCGAGTAATGTCTTCCAAGATGTCCAATTCCCAATCCCTGGAACTTCTGAATGCTAGCCTGTATGACAAAAGAGACTCTGAAGCTGGGATTAAGTTAAGAATCTTGAGTGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9565 ZDHHC21::PTPRD ENSG00000175893.12::ENSG00000153707.19 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC21 ENSG00000175893.12 protein_coding - - chr9:14611071-14693432:- chr9:14680033:- chr9:14611069-14693430:- chr9:14680031:- PTPRD ENSG00000153707.19 protein_coding - + chr9:8314246-10613002:- chr9:9554442:+ chr9:8314246-10613002:- chr9:9554442:+ chr9:14675364,chr9:14675368 chr9:9541577,chr9:9541573 NA NA chr9:14675362,chr9:14675366 chr9:9541577,chr9:9541573 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 9 6 15 395 40 ENST00000380916.9 unknown upstream upstream duplicates(5) GGTCGGGAGAGCGGCGGCAGCGAGAGGCGAGCCAGCGGCGACG___AATGAAGAACTTTTTCACTTACTGCAGGATTTTCAGCTTCAGCAAGCAG___GTTCTCATGGAGAACTGTTATTGAAGAGAGATCCATTTGGTGGGATATAATTAAAAAAAATGAATCAAAAGAAAATCTCTAAATGCAGATTCCAGAAAAATTACAGCACATCTCAGTGAATTTGCAAGTG|GTTACACTGGGAGCTATTTAGAAAAAATGTTGACATGGTTCGGGGGAGTGGGGGTCCATGTCAAGCAAATACTGTAGGGTTAAATATCTTGAAAGAAATATATTCTGGCACCATCCAAGAGAAAATGAACAATCACACTCCTCTGGCACCTGAAGATATTGGTCGTTGTTTGGCACCTGAAGAAATTACCCATGAAATGAACACTTGAGGCTTGACTCATTAGAATTCAACTCCAGTGTCTTCAAATGAATAAGAATCTCTACACGGATACTGAGAAATAGAGATAAAAAGAATTGCAGAGGAAACGTCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9572 POFUT1::HNRNPM ENSG00000101346.15::ENSG00000099783.13 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POFUT1 ENSG00000101346.15 protein_coding + + chr20:32207855-32238658:+ chr20:32216721:+ chr20:30795658-30826461:+ chr20:30804524:+ HNRNPM ENSG00000099783.13 protein_coding + - chr19:8444767-8489114:+ chr19:8475618:- chr19:8509651-8553998:+ chr19:8540502:- chr20:32225168,chr20:32225167 chr19:8480047,chr19:8480048 NA NA chr20:30812971,chr20:30812970 chr19:8544931,chr19:8544932 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none GDP-fucose_protein_O-fucosyltransferase(43%)| O-FucT(32%)| 4 4 8 556 22 ENST00000375749.8 unknown downstream downstream duplicates(4),mismatches(1) GGTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGCCCAGATAAGAAGACGTGCCCCATGAAG___GAAGGAAACCCCTTTGGCCCATTCTGGGATCAGTTTCATGTGAGTTTCAACAAGTCGGAGCTTTTTACAGGCATTTCCTTCAGTGCTTCCTACAGAGAACAATGGAGCCAGAG|CTTCTAGAACAAGGCACCCATGAAGAGGGCAACACACATCATGCCCCACTGCTCCCTGTGCACCGGAAGAAGGGCCTGATCATCAGGGACAGCCGCCTTTCAAGCCTGACAATGATGTCTGTCCTTGTACCATTTTCACATCCTTTGTTATGGCAGACCCGCAAAGGAAGGTTTATACCTAAATCCCTAATGACTTCTCAGTCCAAGAAAGTTTCTGTGTAAAAAAGCAGCAGCTTTCCTGCgGTGAAGGGGAAGGTCAAAGAGTCACCAACACATAAAGGATTTCAAAAAGGAAAATTTACAATTTCTC VAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQs|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9575 GTDC1::ZEB2 ENSG00000121964.15::ENSG00000169554.23 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1698 TRUE 672 GTDC1 ENSG00000121964.15 protein_coding - - chr2:143938068-144332568:- chr2:144331494:- chr2:144695635-145090135:- chr2:145089061:- ZEB2 ENSG00000169554.23 protein_coding - - chr2:144364364-144521057:- chr2:144430026:- chr2:145121931-145278624:- chr2:145187593:- chr2:144329270,chr2:144329274 chr2:144432599,chr2:144432600 NA NA chr2:145086837,chr2:145086841 chr2:145190166,chr2:145190167 NA NA sense sense unknown intron CDS/splice-site duplication high none |Drought_induced_19_protein_(Di19)__zinc-binding(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-C2HC_2(100%),zf-Di19(100%),zf-met(100%) 2 1 5 18 913 unknown ENST00000636471.1 upstream downstream duplicates(2),mismatches(1) TAAGCACATAACTTCCCATTTTCATCGGGATCCAGACAATCCCATTCTGTCCAGGTGGAAAGATTCTCTGAATTTAAGTCTTGGGAATGCAGCAGCGAAATTTAACCTTTAGTCCCGAAGTAGTTTTTTTGCCTTCTCTCGCACATACAACTTTTAGAGTCTTCTGACAACTGTGCTGCTTTAGGTTATCTTGAGATTCTTAAGTTAATGCCTTGAGGCCGTGTGATGGGAGTTTCAAAGAGAAGGCTTTTACAGCTTTTCTTCCACCTGTATCGCAGTTTGAAATGGAAAAC|TGGTGAACTATGACAATGTAGTGGACACAGGTTCTGAAACAGATGAGGAAGACAAGCTTCATATTGCTGAGGATGACGGTATTGCCAACCCTCTGGACCAGGAGACGAGTCCAGCTAGTGTGCCCAACCATGAGTCCTCCCCACACGTGAGCCAAGCTCTGTTGCCAAGAGAGGAAGAGGAAGATGAAATAAGGGAGGGTGGAGTGGAACACCCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9576 GTDC1::ZEB2 ENSG00000121964.15::ENSG00000169554.23 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1698 TRUE 672 GTDC1 ENSG00000121964.15 protein_coding - - chr2:143938068-144332568:- chr2:144332439:- chr2:144695635-145090135:- chr2:145090006:- ZEB2 ENSG00000169554.23 protein_coding - - chr2:144364364-144521057:- chr2:144430026:- chr2:145121931-145278624:- chr2:145187593:- chr2:144329270,chr2:144329274 chr2:144432599,chr2:144432600 NA NA chr2:145086837,chr2:145086841 chr2:145190166,chr2:145190167 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Drought_induced_19_protein_(Di19)__zinc-binding(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-C2HC_2(100%),zf-Di19(100%),zf-met(100%) 0 4 0 73 913 ENST00000682281.1 ENST00000636471.1 upstream downstream none CGCCGGTGGCCAGGAGGGAGAGACAAGGAGGAGGAGGAGGAGGAG|TGGTGAACTATGACAATGTAGTGGACACAGGTTCTGAAACAGATGAGGAAGACAAGCTTCATATT...ACCCTCTGGACCAGGAGACGAGTCCAGCTAGTGTGCCCAACCATGAGTCCTCCCCACACGTGAGCCAAGCTCTGTTGCCAAGAGAGGAAGAGGAAGATGAAATAAGGGAGGGTGGAGTGGAACACCCCTGGCACAACAACGAGATTCTACAAGCCTCTGTAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9582 PSPC1::DACH1 ENSG00000121390.19::ENSG00000276644.5 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1700 TRUE 673 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19730239:- chr13:20248892-20357159:- chr13:20304379:- DACH1 ENSG00000276644.5 protein_coding - - chr13:71437966-71867204:- chr13:71681910:- chr13:72012098-72441342:- chr13:72256042:- chr13:19703280,chr13:19703295 chr13:71809822,chr13:71809824 NA NA chr13:20277420,chr13:20277435 chr13:72383954,chr13:72383956 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| NOPS(100%),RRM_1(100%)| 1 2 4 1470 25 ENST00000471658.5 ENST00000613252.5 upstream downstream duplicates(2) CTCAGACGCTTGGAAGAACTCAGAAACCAAGAGTTGCAAAAACGGAAGCAAATACAACTAAG___ACATGAAGAGGAGCATCGGCGGCGTGAGGAAGAAATGATCCGACACAGAGAACAGGAGGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT|TTCTAGACCTGGAAGGCCTCCTAAGAGGACTCAAAGTGTCACCTCCCCAGAGAACTCTCACATCATGCCGCATTCTGTCCCTGGTCTCATGTCTCCTGGGATAATTCCACCAACAG___GTCTG LRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMEN|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9583 PSPC1::DACH1 ENSG00000121390.19::ENSG00000276644.5 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA TRUE 1700 TRUE 673 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19705662:- chr13:20248892-20357159:- chr13:20279802:- DACH1 ENSG00000276644.5 protein_coding - - chr13:71437966-71867204:- chr13:71681910:- chr13:72012098-72441342:- chr13:72256042:- chr13:19703280,chr13:19703295 chr13:71809822,chr13:71809824 NA NA chr13:20277420,chr13:20277435 chr13:72383954,chr13:72383956 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| NOPS(100%),RRM_1(100%)| 1 0 5 1088 25 ENST00000338910.9 ENST00000613252.5 upstream downstream duplicates(2) GCAATAAACATGGGAG___ATGCGTTTAGCCCAGCCCCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGCAACTATACCTGGCCCACCAATGGGTCCTGGTC...GAAGGAGCCGCAAATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTG|TTCTAGACCTGGAAGGCCTCCTAAGAGGACTCAAAGTGTCACCTCCCCAGAGAACTCTCACATCATGCCGCATTCTGTCCCTGGTCTCATGTCTCCTGGGATAATTCCACCAACAG___GTCTG EGAANMGTPMMPDNGAV|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9596 OXR1::RSPO2 ENSG00000164830.19::ENSG00000147655.12 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106270367:+ chr8:107282372-107764922:+ chr8:107282595:+ RSPO2 ENSG00000147655.12 protein_coding - - chr8:107899316-108083642:- chr8:107989244:- chr8:108911544-109095870:- chr8:109001472:- chr8:106283611,chr8:106283610 chr8:107994180,chr8:107994181 NA NA chr8:107295839,chr8:107295838 chr8:109006408,chr8:109006409 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Furin-like_repeat__cysteine-rich(96%) |Furin-like_2(23%) 0 4 0 59 4 ENST00000517566.7 ENST00000276659.10 downstream downstream none CGCCGCCCAGCCCCGCCGAGAGGGGCGCACTCGCCGCCGCGGGGCCCGCCGCCGCTCACCGCAGCCCCCTCCTGGCGACCCGCAA|CTAGTTATGTATCAAATCCCATTTGCAAGGGTTGTTTGTCTTGTTCAAAGGACAATGGGTGTA...CTATGGACACCGAGCCCCAGATATGAACAGATGTGCAA___GATGCAGAATAGAAAACTGTGATTCTTGCTTTAGCAAAGACTTTTGTACCAAGTGCAAAGTAGGCTTTTATTTGCATAGAGGCCGTTGCTTTGATGAATGTCCAGATGGTTTTGCACCATTAGAAGAAACCATGGAATGTGTGG___AAGGATGTGAAGTTGGTCATTGGAGCGAATGGGGAACTT...CACAATACTGTGTCCAACCATTGCTGAATCCAGGAGATGCAAGATGACAATGAGGCATTGTCCAGGAG___GGAAGAGAACACCAAAGGCGAAGGAGAAGAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE R-spondin 2 1 colorectal epithelial TSG, fusion translocation 9598 AK3::CARM1P1 ENSG00000147853.17::ENSG00000227835.9 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AK3 ENSG00000147853.17 protein_coding - - chr9:4709556-4742043:- chr9:4740937:- chr9:4709556-4742043:- chr9:4740937:- CARM1P1 ENSG00000227835.9 transcribed_unprocessed_pseudogene - + chr9:2907073-3053408:- chr9:3020999:+ chr9:2907073-3053408:- chr9:3020999:+ chr9:4733363,chr9:4733366 chr9:3009046,chr9:3009043 NA NA chr9:4733363,chr9:4733366 chr9:3009046,chr9:3009043 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Adenylate_kinase(14%)| AAA_17(0%),AAA_18(0%),ADK(0%)| 0 1 3 1468 2 ENST00000381809.8 unknown upstream upstream none CGCGCAGGCCAGGCCAAAGCCCTGGTACCCGCGCGGTGCGGGCCTCAGTCTGCGGCCATGGGGGCGTCCGCGCGGCTGCTGCGAGCGGTGATCATGGGGGCCCCGGGCTCGGGCAAGGGCACCGTGTCGTCGCGCATCACTACACACTTCGAGCTGAAGCACCTCTCCAGCGGGGACCTGCTCCGGGACAACATGCTGCGGGGCACAG|TAGAGACGGGGgTTCAACGTGTTTACCAGGATGGTCTCGATCTCCTGACCTG___CAATTACTTCAG...GTATATCTGTGAAAACTCTTTTATTAACAAGTGGTGGAAAACTCAACTACGTATAACTTGAATAGGAGCTTTATGGCTCAAAAAACCGAAAAATACAGGA MGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGT|vetgvqrvyqdgldlltcnyf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9626 ENSG00000286162::PLGRKT ENSG00000286162.4::ENSG00000107020.10 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286162 ENSG00000286162.4 lncRNA - - chr9:5457477-5629748:- chr9:5629567:- chr9:5457477-5629748:- chr9:5629567:- PLGRKT ENSG00000107020.10 protein_coding - - chr9:5357971-5437925:- chr9:5361888:- chr9:5357971-5437925:- chr9:5361888:- chr9:5528675,chr9:5528679 chr9:5393416,chr9:5393417 NA NA chr9:5528675,chr9:5528679 chr9:5393416,chr9:5393417 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Uncharacterised_conserved_protein_(DUF2368)(79%) |DUF2368(4%) 1 1 2 15 818 ENST00000661858.1 ENST00000223864.7 upstream downstream duplicates(2),mismatches(1) CTCGGCCGGGGAGCGTGCGGAGTCTGCACGCCGCGGCCGTCGGTCCAACGCGGGGAGGCTCAGGGATTTTCGGCAGCAGCGACTTCATCCACCCCGGACCGCCGGCTGGAGGACGTGCCTGCAGCCGGCGGGTACCTGCGGCCAATTCGGTGGAACGAGGACGCGGACTGCGAAGGCAG|CTGGAAAGGCAGCTCATCATGCAGAGTGAAATGAGGGAAAGACAAATGGCCATGCAGATTGCGTGGTCTCGGGAATTCCTCAAATATTTTGGAACTTTTTTTGGCCTTGCAGCCATCTCTTTAACAGCTGG___AGCGATTAAAAAAAAGAAGCCAGCCTTCCTGGTCCCGATTGTTCCAT...TTTAGAAAGAATGAAAG___GTGAAGCTGAGGACATACTGGAAACAGAAAAGAGTAAATTGCAGCTGCCAAGAGGAATGATCACTTTTGAAAGCATTGAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9643 MYO5C::SHC4 ENSG00000128833.13::ENSG00000185634.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 973 TRUE 1708 TRUE 674 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52295610:- chr15:52484519-52588001:- chr15:52587807:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48924949:- chr15:49115938-49256116:- chr15:49217146:- chr15:52284004,chr15:52284012,chr15:52284012 chr15:48946753,chr15:48946724,chr15:48946758 NA NA chr15:52576201,chr15:52576209,chr15:52576209 chr15:49238950,chr15:49238921,chr15:49238955 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(97%),SH2_domain(100%) |PID(64%),SH2(100%) 90 91 300 551 387 ENST00000261839.12 ENST00000332408.9 upstream downstream duplicates(45),mismatches(28) GAACAGGAGGCCGTTGGAAAACTTTGGGCAAGATGGCCCGGCGGTGATTTCCGCGGCGGTCTCTCCTGCGCCCGGCCTCTGCGGCGCAGGCCCAGCCCCCGAGCCTCGCACGTTCGGCAGCCCCGGCCTGGCCCCGGCCCCTCCTGCCCATGGCGGTGGCCGAGCTGTACACGCAG|TACATGGGCTGTGTTGAAGTGCTGCAATCAATGAGATCACTGGATTTTGGAATGAGAACCCAAGTTACAAG___GGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAG___CCTCCAGTTAAGTTCCTATCAACA MAVAELYTQ|YMGCVEVLQSMRSLDFGMRTQVTREAISRLCEAVPGANGAIKKRKPPVKFLS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9644 MYO5C::SHC4 ENSG00000128833.13::ENSG00000185634.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1708 TRUE 674 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52295610:- chr15:52484519-52588001:- chr15:52587807:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48890811:- chr15:49115938-49256116:- chr15:49183008:- chr15:52284004,chr15:52284012,chr15:52284012 chr15:48946753,chr15:48946724,chr15:48946758 NA NA chr15:52576201,chr15:52576209,chr15:52576209 chr15:49238950,chr15:49238921,chr15:49238955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(82%),SH2_domain(100%) |PID(31%),SH2(100%) 6 2 127 551 802 ENST00000261839.12 ENST00000332408.9 upstream downstream duplicates(6),mismatches(20) GGAAAACTTTGGGCAAGATGGCCCGGCGGTGATTTCCGCGGCGGTCTCTCCTGCGCCCGGCCTCTGCGGCGCAGGCCCAGCCCCCGAGCCTCGCACGTTCGGCAGCCCCGGCCTGGCCCCGGCCCCTCCTGCCCATGGCGGTGGCCGAGCTGTACACGCAG|GGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAG___CCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGT MAVAELYTQ|gsnkspv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9645 MYO5C::SHC4 ENSG00000128833.13::ENSG00000185634.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1708 TRUE 674 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52295610:- chr15:52484519-52588001:- chr15:52587807:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48872142:- chr15:49115938-49256116:- chr15:49164339:- chr15:52284004,chr15:52284012,chr15:52284012 chr15:48946753,chr15:48946724,chr15:48946758 NA NA chr15:52576201,chr15:52576209,chr15:52576209 chr15:49238950,chr15:49238921,chr15:49238955 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(42%),SH2_domain(100%) |PID(13%),SH2(100%) 1 1 21 551 733 ENST00000261839.12 ENST00000332408.9 upstream downstream mismatches(6) ACAGGAGGCCGTTGGAAAACTTTGGGCAAGATGGCCCGGCGGTGATTTCCGCGGCGGTCTCTCCTGCGCCCGGCCTCTGCGGCGCAGGCCCAGCCCCCGAGCCTCGCACGTTCGGCAGCCCCGGCCTGGCCCCGGCCCCTCCTGCCCATGGCGGTGGCCGAGCTGTACACGCAG|ATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCT___GATACTACAGACTATGTTGCCTACGTAGCTAAAGATCCAGTTAATCAACGAG___CCTGTCACATATTGGAATGCCACAATGGAATGGCCCAAGACGTCATAAGTACCATAGGGCAGGCTTTTGAACTCCGGTTTAAAC MAVAELYTQ|IIANHHMQSISFASGGDPDTTDYVAYVAKDPVNQRACHILECHNGMAQDVISTIGQAFELRFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9646 MYO5C::SHC4 ENSG00000128833.13::ENSG00000185634.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1708 TRUE 674 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52295610:- chr15:52484519-52588001:- chr15:52587807:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48884367:- chr15:49115938-49256116:- chr15:49176564:- chr15:52284004,chr15:52284012,chr15:52284012 chr15:48946753,chr15:48946724,chr15:48946758 NA NA chr15:52576201,chr15:52576209,chr15:52576209 chr15:49238950,chr15:49238921,chr15:49238955 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Phosphotyrosine_interaction_domain_(PTB/PID)(68%),SH2_domain(100%) |PID(25%),SH2(100%) 0 1 85 551 976 ENST00000261839.12 ENST00000332408.9 upstream downstream duplicates(4),mismatches(17) GGAAAACTTTGGGCAAGATGGCCCGGCGGTGATTTCCGCGGCGGTCTCTCCTGCGCCCGGCCTCTGCGGCGCAGGCCCAGCCCCCGAGCCTCGCACGTTCGGCAGCCCCGGCCTGGCCCCGGCCCCTCCTGCCCATGGCGGTGGCCGAGCTGTACACGCAG|CCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCACATTGATGAATCTTGACAACCAACAG___ATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCT___GATACTACAGACTATGTTGC MAVAELYTQ|PPVKFLSTVLGKSNLQFSGMNIKLTISTCSLTLMNLDNQQIIANHHMQSISFASGGDPDTTDYV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9650 FANCA::CDK10 ENSG00000187741.16::ENSG00000185324.22 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 974 TRUE 1710 TRUE 675 FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89758577:- chr16:89793091-89883385:- chr16:89824985:- CDK10 ENSG00000185324.22 protein_coding + + chr16:89680737-89696354:+ chr16:89689252:+ chr16:89747145-89762762:+ chr16:89755660:+ chr16:89757992 chr16:89687413 NA NA chr16:89824400 chr16:89753821 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Fanconi_anaemia_group_A_protein_N_terminus(100%)|Protein_kinase_domain(100%) Fanconi_A_N(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 36 19 55 291 786 ENST00000568369.6 ENST00000511415.5 upstream upstream duplicates(7),mismatches(10) TGGAAATTCAACCTGAAGCTGATGCTCTTTCAGATACTGAACG___GCAGGACTTCCACCAGTGGGCGATCCATGAGCACTTTCTCCCTGAGTCCTCGGCTTCAGGGGGCTGTGACGGAGACCTGCAGGCTGCGTGTACCATTCTTGTCAACGCACTGATGGATTTCCACCAAAG|CTGGGACGATGCCGGAGTGTGAAGGAGTTTGAGAAGCTGAACCGCATTGGAGAGGGTACCTACGGCATTGTGT___ATCGGGCCCGGGACACCCAGACAGATGAGATTGTCGCACTGAAGAAGGTGCGGATGGACAAGGAGAAGGATG___GCATCCCC EIQPEADALSDTERQDFHQWAIHEHFLPESSASGGCDGDLQAACTILVNALMDFHQs|WDDAGV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 10 CMGC CDK CDK10 Q15131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 9651 FANCA::CDK10 ENSG00000187741.16::ENSG00000185324.22 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1710 TRUE 675 FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89758577:- chr16:89793091-89883385:- chr16:89824985:- CDK10 ENSG00000185324.22 protein_coding + + chr16:89680737-89696354:+ chr16:89690553:+ chr16:89747145-89762762:+ chr16:89756961:+ chr16:89757992 chr16:89687413 NA NA chr16:89824400 chr16:89753821 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Fanconi_anaemia_group_A_protein_N_terminus(100%)|Protein_kinase_domain(94%) Fanconi_A_N(100%)|PK_Tyr_Ser-Thr(76%),Pkinase(78%) 10 12 33 291 1278 ENST00000563318.1 ENST00000331006.12 upstream upstream duplicates(4),mismatches(5) CACCACTGCACACACTCCAGCCTGGGCAACAGAACCTGTTTCCAAAAATAAATGAAG___TTAACTTACCAAGACTGGTTACACCTGGAGCTGGAAATTCAACCTGAAGCTGATGCTCTTTCAGATACTGAACG___GCAGGACTTCCACCAGTGGGCGATCCATGAGCACTTTCTCCCTGAGTCCTCGGCTTCAGGGGGCTGTGACGGAGACCTGCAGGCTGCGTGTACCATTCTTGTCAACGCACTGATGGATTTCCACCAAAG|ATCGGGCCCGGGACACCCAGACAGATGAGATTGTCGCACTGAAGAAGGTGCGGATGGACAAGGAGAAGGATG___GCATCCCCATCAGCAGCTTGCGGGAGATCACGCTGCTGCTCCGCCTGCGTCATCCGAACATCGTGGAGCTGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 10 CMGC CDK CDK10 Q15131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 9652 FANCA::CDK10 ENSG00000187741.16::ENSG00000185324.22 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1710 TRUE 675 FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89761949:- chr16:89793091-89883385:- chr16:89828357:- CDK10 ENSG00000185324.22 protein_coding + + chr16:89680737-89696354:+ chr16:89690553:+ chr16:89747145-89762762:+ chr16:89756961:+ chr16:89757992 chr16:89687413 NA NA chr16:89824400 chr16:89753821 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Fanconi_anaemia_group_A_protein_N_terminus(100%)|Protein_kinase_domain(94%) Fanconi_A_N(100%)|PK_Tyr_Ser-Thr(76%),Pkinase(78%) 0 5 11 273 1278 ENST00000563510.5 ENST00000331006.12 upstream upstream duplicates(1),mismatches(1) CACACA?TCCAGCCTGGGCAACAGAACCTGTTTCCAAAAATAAATGAAG___TTAACTTACCAAGACTGGTTACACCTGGAGCTGGAAATTCAACCTGAAGCTGATGCTCTTTCAGATACTGAACG|ATCGGGCCCGGGACACCCAGACAGATGAGATTGTCGCACTGAAGAAGGTGCGGATGGACAAGGAGAAGGATG___GCATCCCCATCAGCAGCTTGCGGGAGATCACGCTGCTGCTCCGCCTGCGTCATCCGAACATCGTGGAGCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 10 CMGC CDK CDK10 Q15131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 9653 B9D1::CD82 ENSG00000108641.20::ENSG00000085117.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 975 TRUE 1711 TRUE 676 B9D1 ENSG00000108641.20 protein_coding - - chr17:19334308-19378193:- chr17:19343790:- chr17:19237621-19281506:- chr17:19247103:- CD82 ENSG00000085117.12 protein_coding + + chr11:44564427-44620358:+ chr11:44600158:+ chr11:44585977-44641908:+ chr11:44621708:+ chr17:19340337,chr17:19340341 chr11:44594654,chr11:44594650 NA NA chr17:19243650,chr17:19243654 chr11:44616204,chr11:44616200 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ciliary_basal_body-associated__B9_protein(87%)|Tetraspanin_family(95%) B9-C2(75%)|Tetraspanin(77%) 36 29 25 538 398 ENST00000674596.1 ENST00000227155.9 upstream upstream duplicates(3),inconsistently_clipped(1),mismatches(9) TGTGGAACTTCCCCATTGATGTCACCTTTAAAAGCACCAACCCCTACGGCT___GGCCACAGATCGTGCTCAGCGTGTATGGACCAGATGTGTTCGGGAACGATGTGGTTCGAGGCTATGGGGCCGTGCACGTGCCCTTCTCACCTGGCCG___GCACAAAAGGACCATCCCCATGTTTGTCCCAGAATCTACGTCTAAACTGCAGAAGTTTACAAG___CTGGTTCATGGGGCGGCGGCCCGAGTACACAGACCCCAAGGTGGTGGCTCAGGGTGAAGGCCGGGAAG|ATCCTGGGCGCAGTGATCCTGGGCTTCGGGGTGTGGATCCTGGCCGACAAGAGCAGTTTCATCTCTGTCCTGC___AAACCTCCTCCAGCTCGCTTAGGATGGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCGTCAACGAGGTCCGC CGTSPLMSPLKAPTPTAGHRSCSACMDQMCSGTMWFEAMGPCTCPSHLAGTKGPSPCLSQNLRLNCRSLQAGSWGGGPSTQTPRWWLRVKAGK|ILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFIGVGAVTMLMGFLGCIGAVNEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1180 chr17:19344506-19344574:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9654 B9D1::CD82 ENSG00000108641.20::ENSG00000085117.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1711 TRUE 676 B9D1 ENSG00000108641.20 protein_coding - - chr17:19334308-19378193:- chr17:19347269:- chr17:19237621-19281506:- chr17:19250582:- CD82 ENSG00000085117.12 protein_coding + + chr11:44564427-44620358:+ chr11:44600158:+ chr11:44585977-44641908:+ chr11:44621708:+ chr17:19340337,chr17:19340341 chr11:44594654,chr11:44594650 NA NA chr17:19243650,chr17:19243654 chr11:44616204,chr11:44616200 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ciliary_basal_body-associated__B9_protein(73%)|Tetraspanin_family(95%) B9-C2(61%)|Tetraspanin(77%) 2 0 13 689 398 ENST00000674596.1 ENST00000227155.9 upstream upstream mismatches(3) TGCTCAGCGTGTATGGACCAGATGTGTTCGGGAACGATGTGGTTCGAGGCTATGGGGCCGTGCACGTGCCCTTCTCACCTGGCCG___GCACAAAAGGACCATCCCCATGTTTGTCCCAGAATCTACGTCTAAACTGCAGAAGTTTACAAG|ATCCTGGGCGCAGTGATCCTGGGCTTCGGGGTGTGGATCCTGGCCGACAAGAGCAGTTTCATCTCTGTCCTGC___AAACCTCCTCCAGCTCGCTTAGGATGGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCG CSACMDQMCSGTMWFEAMGPCTCPSHLAGTKGPSPCLSQNLRLNCRSLQ|dpgrsdpglrgvdpgrqeqfhlcpanllqla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9655 B9D1::CD82 ENSG00000108641.20::ENSG00000085117.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1711 TRUE 676 B9D1 ENSG00000108641.20 protein_coding - - chr17:19334308-19378193:- chr17:19343790:- chr17:19237621-19281506:- chr17:19247103:- CD82 ENSG00000085117.12 protein_coding + + chr11:44564427-44620358:+ chr11:44605058:+ chr11:44585977-44641908:+ chr11:44626608:+ chr17:19340337,chr17:19340341 chr11:44594654,chr11:44594650 NA NA chr17:19243650,chr17:19243654 chr11:44616204,chr11:44616200 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ciliary_basal_body-associated__B9_protein(87%)|Tetraspanin_family(85%) B9-C2(75%)|Tetraspanin(57%) 1 0 7 538 452 ENST00000582857.2 ENST00000227155.9 upstream upstream mismatches(2) GCACAAAAGGACCATCCCCATGTTTGTCCCAGAATCTACGTCTAAACTGCAGAAGTTTACAAG___CTGGTTCATGGGGCGGCGGCCCGAGTACACAGACCCCAAGGTGGTGGCTCAGGGTGAAGGCCGGGAAG|AAACCTCCTCCAGCTCGCTTAGGATGGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCGTCAACGAGGTCCGCTGCCTGCTGGGGCTG___TACTTTGCTTTCCTGCTCCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAG___CTGAAGCAGGA MFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGRE|eTSSSSLRMGAYVFIGVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1180 chr17:19344506-19344574:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9658 TMEM241::GREB1L ENSG00000134490.14::ENSG00000141449.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM241 ENSG00000134490.14 protein_coding - - chr18:23197144-23437961:- chr18:23430631:- chr18:20777108-21017925:- chr18:21010595:- GREB1L ENSG00000141449.16 protein_coding + - chr18:21242232-21526112:+ chr18:21343129:- chr18:18822193-19106073:+ chr18:18923090:- chr18:23429396,chr18:23429540,chr18:23429540,chr18:23429398,chr18:23429445,chr18:23429398 chr18:21356195,chr18:21356149,chr18:21356150,chr18:21356194,chr18:21356068,chr18:21356141 NA NA chr18:21009360,chr18:21009504,chr18:21009504,chr18:21009362,chr18:21009409,chr18:21009362 chr18:18936156,chr18:18936110,chr18:18936111,chr18:18936155,chr18:18936029,chr18:18936102 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 30 12 38 163 26 ENST00000581444.5 unknown upstream downstream duplicates(1),mismatches(3) GTCGGGCGGCGGCCAGGGGATTTGGGCAGGCACCGTGGATCCCCGgGAAGGGGACGAGTTGACAGATGTGCGTGAGGAGGTCTCTGGTCGGCCTCACCTTTTGTACCTGCTACCTGGCTTCTTACCTCACGAACAAG___TATGTGCTGTCTGTCTTGAAATTTACCTACCCTACATTATTCCAAGG|ATAAGAAACCAAAAGGTGTCCATGACTTAGGTACTAAATGGCAAGGCTGGAACCAGAATCCAAGTTGCCCAGTCACACAGTTTTTGTTTTTTAAATAACCAAATTGGTCAAAAATCTTCCTCAAAGACAAAAACAGATGAAG___GCAAGATCTTCGTCAGTCGGTCACCAAGGCTGGAGTACAATGGCACAACCATGACTCACTGCAGCCTCAACCTCCCAGACTCAAGCAATCCTCCCACCTTAGTCTCCCA MCVRRSLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQg|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9663 TANC1::PKP4 ENSG00000115183.15::ENSG00000144283.23 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 977 FALSE NA FALSE NA TANC1 ENSG00000115183.15 protein_coding + + chr2:158968640-159232659:+ chr2:159065971:+ chr2:159825152-160089170:+ chr2:159922483:+ PKP4 ENSG00000144283.23 protein_coding + + chr2:158456952-158682879:+ chr2:158631753:+ chr2:159313464-159539391:+ chr2:159488265:+ chr2:159091330,chr2:159091327 chr2:158624793,chr2:158624787 NA NA chr2:159947842,chr2:159947839 chr2:159481305,chr2:159481299 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Armadillo/beta-catenin-like_repeat(100%) |Arm(100%) 25 20 16 173 284 ENST00000263635.8 ENST00000389757.7 downstream upstream low_entropy(1),mismatches(4) GCGCTGAGGAGCTGGAAACTTTCCCGGCAG___GAGCTGACTGCTGGGCAGGAACGTCTCTCAGGAGAAAGAGTGGAAGAGAAAATTGTGAACTAAGGCCCCCTGCCCCCTTTTCCTGGTGCATGTGAAGTTATCAAAAACAG___AAACAAGTGTTGAAAATGTTAAAGGCTGTGCTGAAGAAGAGCCGAGAGGGAGGAAAGGGAGGCAAGAAGGAAGCAG|GCTTACGGAGTTCCTATGCTAGTCAGCATAGTCAGCTTGGGCAAGACCTTCGTTCTGCCGTGTCTCCCGACTTGCACATTACTCCTATATATGAGGGGAGGACCTATTACAGCCCAGTGTACCGCAGCCCAAACCATGGAACTGTGGAGCTCCAAGGATCGCAGACGGCGTTGTATCGCACAGGTTCAG___TAGGTATTGGAAATCTA MLKAVLKKSREGGKGGKKEA|gLRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYRTGSVGIGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma OVARY,BREAST,BLADDER no_match 159825294,159954346,160007067 FALSE,FALSE,FALSE 159530189,159459582,159389692 FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9664 ZNF106::ENSG00000259602 ENSG00000103994.18::ENSG00000259602.1 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF106 ENSG00000103994.18 protein_coding - - chr15:42412823-42491141:- chr15:42456958:- chr15:42705021-42783339:- chr15:42749156:- ENSG00000259602 ENSG00000259602.1 lncRNA + + chr15:48938236-48948031:+ chr15:48947185:+ chr15:49230433-49240228:+ chr15:49239382:+ chr15:42453253,chr15:42453259 chr15:48946789,chr15:48946783 NA NA chr15:42745451,chr15:42745457 chr15:49238986,chr15:49238980 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none zf-met(100%)| 36 6 18 259 45 ENST00000564754.7 ENST00000559620.1 upstream upstream duplicates(1),mismatches(6) AGAACCTCAAGGGCAG___GGACATTAGTCATGAGTGCCGAGTGTGCGGGGTCACAGAAGTGGGTCTTTCTGCATATGCAAAGCACATTTCTGGCCAGTTGCACAAAGATAACGTTGATGCCCAGGAAAGAGAAGATGATGGAAAAGGAGAGGAAGAGGAAGAAGATTATTTTGACAAGGAACTCATTCAGTTAATAAAACAAAGGAAAGAACAAAGTCG|AAGCCAAAAGAAAATCAGCATGAAAACAGATCAGCCTCTGGCCAGGGTCATCCAGCACCTCTGGGTCTTGTCTTTCAATAAAGGAATGGCTAGAAGTGTGACCCCTTCCCCAAGACACTCTCCTGCCACTGATGGATCAACAG___AATGCTATGGAGATGCAAAG NLKGRDISHECRVCGVTEVGLSAYAKHISGQLHKDNVDAQEREDDGKGEEEEEDYFDKELIQLIKQRKEQSr|sqkkismktdqplarviqhlwvlsfnkgmarsvtpsprhspatdgstecygda NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9665 MGA::GABRB3 ENSG00000174197.19::ENSG00000166206.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 978 TRUE 1715 TRUE 677 MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41713496:+ chr15:41913332-42065279:+ chr15:42005694:+ GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26621534:- chr15:26788699-27184686:- chr15:26866681:- chr15:41719038,chr15:41719037 chr15:26671602,chr15:26671603 NA NA chr15:42011236,chr15:42011235 chr15:26916749,chr15:26916750 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none MGA__conserved_domain(100%),T-box(100%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(77%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) DUF4801(100%),T-box(100%)|Neur_chan_LBD(26%),Neur_chan_memb(100%) 6 27 21 373 130 ENST00000570161.6 ENST00000541819.6 downstream downstream low_entropy(4),mismatches(4) GTTCCAGTCTAGCTTTGGAGAAGCGCCAACCTGCTCACTGCCGCCGACCAGACTGCATGTTTGGTTGTACTTGTTTGAAAAGAAAAGTTGTACTTGTTAAAGGAGGATCCAAAACTAAGCATTTTCAGAGGAAGGCTGCTCATCGAGATCCAGTATTTTATGATACTCTGGGAGAGGAGGCAAGGGAGGAGGAAGAAGGAATCAGGGAGGAGGAGGAACAATTGAAAGAGAAAAAGAAGAGAAAGAAGCTAGAATACA|GATTATACCTTAACCATGTATTTTCAACAATATTGGAGAGATAAAAGGCTCGCCTATTCTGGGATCCCTCTCAACCTCACGCTTGACAATCGAGTGGCTGACCAGCTATGGGTGCCCGACACATATTTCTTAAATGACAAAAAGTCATTTGTGCATGGAGTGACAGTGAAAAACCGCATGATCCGTCTTCACCCTGATGGGACAGTGCTGTATGGGCTCAG___AATCACCACGACAGCAGCATGCATGATGGACCTCAGGAGATACCCCC SSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHRDPVFYDTLGEEAREEEEGIREEEEQLKEKKKRKKLEY|rlylnhvfstiler* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-626 chr15:41691585-41691678:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9666 MGA::GABRB3 ENSG00000174197.19::ENSG00000166206.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1715 TRUE 677 MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41713496:+ chr15:41913332-42065279:+ chr15:42005694:+ GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26642528:- chr15:26788699-27184686:- chr15:26887675:- chr15:41719038,chr15:41719037 chr15:26671602,chr15:26671603 NA NA chr15:42011236,chr15:42011235 chr15:26916749,chr15:26916750 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none MGA__conserved_domain(100%),T-box(100%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(79%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) DUF4801(100%),T-box(100%)|Neur_chan_LBD(36%),Neur_chan_memb(100%) 3 5 21 373 6 ENST00000570161.6 ENST00000555632.5 downstream downstream none GTTCCAGTCTAGCTTTGGAGAAGCGCCAACCTGCTCACTGCCGCCGACCAGACTGCATGTTTGGTTGTACTTGTTTGAAAAGAAAAGTTGTACTTGTTAAAGGAGGATCCAAAACTAAGCATTTTCAGAGGAAGGCTGCTCATCGAGATCCAGTATTTTATGATACTCTGGGAGAGGAGGCAAGGGAGGAGGAAGAAGGAATCAGGGAGGAGGAGGAACAATTGAAAGAGAAAAAGAAGAGAAAGAAGCTAGAATACA|GCTATGCAGGAACTGCACAGCTAGGATTCAGCCACTGTGGAACTAACGTGGCTTATAGATTCATTTTTTCCTTTCCAGGAGTTTGGAATTGAAAATGTATGTATACATATATATACACAGTTGCCCCTCAGTATATTCAGGGGATTGGTTCCAGGACCACCCCCATACCTCCAAGTACACCAAAATCCACACATATTCAAGTCCCATAGTCAGTCCTGTGGAACCCATGTATACCATA SSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHRDPVFYDTLGEEAREEEEGIREEEEQLKEKKKRKKLEY|syagtaqlgfshcgtnvayrfifsfpgvwn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-626 chr15:41691585-41691678:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9667 MGA::GABRB3 ENSG00000174197.19::ENSG00000166206.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1715 TRUE 677 MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41713496:+ chr15:41913332-42065279:+ chr15:42005694:+ GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26625534:- chr15:26788699-27184686:- chr15:26870681:- chr15:41719038,chr15:41719037 chr15:26671602,chr15:26671603 NA NA chr15:42011236,chr15:42011235 chr15:26916749,chr15:26916750 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none MGA__conserved_domain(100%),T-box(100%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(77%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) DUF4801(100%),T-box(100%)|Neur_chan_LBD(28%),Neur_chan_memb(100%) 0 1 21 373 21 ENST00000570161.6 ENST00000556166.2 downstream downstream none GTTCCAGTCTAGCTTTGGAGAAGCGCCAACCTGCTCACTGCCGCCGACCAGACTGCATGTTTGGTTGTACTTGTTTGAAAAGAAAAGTTGTACTTGTTAAAGGAGGATCCAAAACTAAGCATTTTCAGAGGAAGGCTGCTCATCGAGATCCAGTATTTTATGATACTCTGGGAGAGGAGGCAAGGGAGGAGGAAGAAGGAATCAGGGAGGAGGAGGAACAATTGAAAGAGAAAAAGAAGAGAAAGAAGCTAGAATACA|ACAGGCTTGGAATTCAAAACTCTGACAGACTCTCCATCCCATGCAAATTCCATCTCTTTGTGACTGTGCTCTTCTCTTTG SSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHRDPVFYDTLGEEAREEEEGIREEEEQLKEKKKRKKLEY|nrlgiqnsdrlsipckfhlfvtvlfs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-626 chr15:41691585-41691678:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9668 MGA::GABRB3 ENSG00000174197.19::ENSG00000166206.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1715 TRUE 677 MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41660525:+ chr15:41913332-42065279:+ chr15:41952723:+ GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26621534:- chr15:26788699-27184686:- chr15:26866681:- chr15:41719038,chr15:41719037 chr15:26671602,chr15:26671603 NA NA chr15:42011236,chr15:42011235 chr15:26916749,chr15:26916750 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Neurotransmitter-gated_ion-channel_ligand_binding_domain(77%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) |Neur_chan_LBD(26%),Neur_chan_memb(100%) 0 1 0 182 130 ENST00000566586.6 ENST00000541819.6 downstream downstream none GTGAGGCCGGCCACGCCCCGCACG|GATTATACCTTAACCATGTATTTTCAACAATATTGGAGAGATAAAAGGCTCGCCTATTC...GATGGACCTCAGGAGATACCCCCTGGACGAGCAGAACTGCACTCTGGAAATTGAAAGCT___ATGGCTACACCACGGATGACATTGAGTTTTACTGGCGAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9669 TRIP10::KDM4B ENSG00000125733.18::ENSG00000127663.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIP10 ENSG00000125733.18 protein_coding + - chr19:6737925-6751530:+ chr19:6743089:- chr19:6737936-6751541:+ chr19:6743100:- KDM4B ENSG00000127663.15 protein_coding + + chr19:4969113-5153598:+ chr19:5150358:+ chr19:4969124-5153609:+ chr19:5150369:+ chr19:6742566,chr19:6742566,chr19:6742566 chr19:5150048,chr19:5150037,chr19:5150085 NA NA chr19:6742577,chr19:6742577,chr19:6742577 chr19:5150059,chr19:5150048,chr19:5150096 NA NA antisense sense unknown CDS CDS/splice-site inversion/3'-3' high none |Jumonji_domain-containing_protein_2A_Tudor_domain(10%) |Tudor_2(0%) 19 12 10 784 220 unknown ENST00000159111.9 upstream upstream duplicates(1),mismatches(5) GGGGGAGGGAAGGTCCAGGTCTGACAAAGAGGGCAGCTCCCTGACTCCGGATCCGCAACCCTGCCCCCATGCCTCCGGGCCACAGTCACTGCTACCTCTGCAAACTCACATTCTCCAGCTGTTTAAAGCCATTTTCCAGCTGCTGCTGGGCCCGCCGCCCTTCTTGGAAGTGCTACAGAAAGAAGAGTGATAAGGCTCGCCAGGGTTCCAGCAGAAGCCCTTTGTAAAACCTGAATCGGGGGGCTCCTCACCATCTTCCTCTCCTGTTTCATCTCTT|GTGGAGTTTGAGGACGGGTCCCAGCTGACGGTGAAGCGTGGGGACATCTTCACCCTGGAGGAGGAGCTGCCCAAGAGGGTCCGCTCTCGGCTG___TCACTGAGCACGGGGGCACCGCAGGAGCCCGCCTTCTCGGGGGAGGAGGCCAAGGCCGCCAAGCGCCCGCGTGTGGGCACCCCGCTTGCCACGGAGGACTCCGGGCGGAGCCAGGACTACGTGGCCTTCGTGGAGAGCCTCCTGCAGGTGCAGGGCCGGCCCGGAGCCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9672 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 980 TRUE 1717 TRUE 678 CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89752222:- chr16:89793091-89883385:- chr16:89818630:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Fanconi_anaemia_group_A_protein(100%) |Fanconi_A(100%),zf-C2H2(100%),zf-C2H2_6(100%) 2 17 16 1955 215 ENST00000397901.8 ENST00000568369.6 upstream downstream duplicates(1),mismatches(2) CCGGAAGTCCCCGCCGGGTGCAGCTTGGTCGGTTCGATCGCCGCCGGGACCTGACACCGCCCGGAGTTGGCGTCCCTTCTCCCTCTCCGAGTGCTGCTCCTGTCATTGTGGCCATGGACG|CTCAAGGAGTTATGACCACTCAGAAAATTCTGATTTGGTCTTTGGTGGCCGCACAGGAAATGAGGATATTATTTCCAGATTGCAG___GAGATGGTAGCTGACCTGGAGCTGCAGCAAGACCTCATAGTGCCTCTCGGCCACACCCCTTCCCAGGAGCACTTCCTCTTTGAGATTTTC MD|aqgvmttqkiliwslvaaqemrilfpdcrrw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 9673 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1717 TRUE 678 CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89749902:- chr16:89793091-89883385:- chr16:89816310:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Fanconi_anaemia_group_A_protein(100%) |Fanconi_A(100%),zf-C2H2(100%),zf-C2H2_6(100%) 5 1 6 1955 268 ENST00000397901.8 ENST00000568369.6 upstream downstream mismatches(3) GGAAGTCCCCGCCGGGTGCAGCTTGGTCGGTTCGATCGCCGCCGGGACCTGACACCGCCCGGAGTTGGCGTCCCTTCTCCCTCTCCGAGTGCTGCTCCTGTCATTGTGGCCATGGACG|GAGATGGTAGCTGACCTGGAGCTGCAGCAAGACCTCATAGTGCCTCTCGGCCACACCCCTTCCCAGGAGCACTTCCTCTTTGAGATTTTCCGCAGACGGCTCCAGGCTCTGACAAGCGGGTGGAGCGTGGCTGCCAGCCTTCAGAGACAGAGGGAGCTGCTAATGTACAAACG___GATCCTCCTCCGCCTGCCTTCGTCTGTCCTCTGCGGCAGCAGCTTCCAGGCAGAACAGCCCATCACTGCCAGATGCGAGCAGTTCTTCCACTTGG...CTGCTCCCACGGAGGTGCCCTGACACAGGACATCACTGCCCACTTCTTCAGG___GGCCTCCTGAACGCCTGTCTGCGGAGCAGAGACCCCTCCCTGATGGcCG MD|gdgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 9674 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1717 TRUE 678 CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89748767:- chr16:89793091-89883385:- chr16:89815175:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Fanconi_anaemia_group_A_protein(100%) |Fanconi_A(100%),zf-C2H2(100%),zf-C2H2_6(100%) 2 0 1 1955 312 ENST00000397901.8 ENST00000568369.6 upstream downstream none CCGGAAGTCCCCGCCGtGTGCAGCTTGGTCGGTTCGATCGCCGCCGGGACCTGACACCGCCCGGAGTTGGCGTCCCTTCTCCCTCTCCGAGTGCTGCTCCTGTCATTGTGGCCATGGACG|GATCCTCCTCCGCCTGCCTTCGTCTGTCCTCTGCGGCAGCAGCTTCCAGGCAGAACAGCCCATCACTGCCAGATGCGAGCAGTTCTTCCACTTGGTCAACTCTGAGATG___AGAAACTTCTGCTCCCACGGAGGTGCCCTGACACAGGACATCACTGCC MD|gsssaclrlssaaaasrqnspslpdasssstwstlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 9675 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1717 TRUE 678 CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89740866:- chr16:89793091-89883385:- chr16:89807274:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Fanconi_anaemia_group_A_protein(96%) |Fanconi_A(45%),zf-C2H2(100%),zf-C2H2_6(100%) 0 1 0 1955 399 ENST00000397901.8 ENST00000568369.6 upstream downstream none GCGTCCCTTCTCCCTCTCCGAGTGCTGCTCCTGTCATTGTGGCCATGGACG|CTATTGGTTTTCCTTTTCTTCTTCTCCTTGATGGGCCTGCTGTCGTCACATCTGACCTCAAAT MD|aigfpflllldgpavvtsdlk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 9676 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1717 TRUE 678 CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89740099:- chr16:89793091-89883385:- chr16:89806507:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Fanconi_anaemia_group_A_protein(64%) |Fanconi_A(23%),zf-C2H2(100%),zf-C2H2_6(100%) 1 0 0 1955 413 ENST00000397901.8 ENST00000305699.15 upstream downstream mismatches(1) GTCGGTTCGATCGCCGCCGGGACCTGACACCGCCCGGAGTTGGCGTCCCTTCTCCCTCTCCGAGTGCTGCTCCTGTCATTGTGGCCATGGACG|AGCACCACAGACCTGCCAAAGGCTTTCCACGTTTGTGCAGCAATCCTCGAGTGTTTAGAGAAGAGGAAGATATCCTGGCTGGCACTCTTTCAGTTGACAGAGAGTGG MD|ehhrpakgfprlcsnprvfreeedilagtlsvdre NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 9677 C18orf25::GREB1L ENSG00000152242.11::ENSG00000141449.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1718 TRUE 679 C18orf25 ENSG00000152242.11 protein_coding + + chr18:46173553-46266992:+ chr18:46253823:+ chr18:43753519-43846955:+ chr18:43833786:+ GREB1L ENSG00000141449.16 protein_coding + + chr18:21242232-21526112:+ chr18:21366027:+ chr18:18822193-19106073:+ chr18:18945988:+ chr18:46262546,chr18:46262546 chr18:21358264,chr18:21358261 NA NA chr18:43842509,chr18:43842509 chr18:18938225,chr18:18938222 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none E3_ubiquitin-protein_ligase_Arkadia_N-terminus(100%)|GREB1_N-terminal_region(100%) RNF111_N(100%)|GREB1(100%) 13 11 7 154 40 ENST00000619301.4 ENST00000424526.7 downstream upstream duplicates(1),mismappers(1),mismatches(1) ATGATGAAGAGGTTTCAGGGAGCAGCAAGACAATCACTGCAGAGATACCAG___GTCATTTGGATCCAGGATTCCTAGCAAGTGACAAAACATCTGCTGGCAATGCGCCACTCAATGAAGAAATTAACATTGCGTCTTCAGATAGTGAAGTAGAGATTGTGGGAGTTCAGGAACATGCAAG|GTGCACAAAAAGCTTTAAACAAGTTAAAATCTAGGCAACAGACTCCCTGAAGTGTTGACTGCCCAACTTAATCATGACTGTGATTCAAAAATGTTAATAAATAAACCAAG___GTGTAGATCATGGGGAATTCATATGCTGGGCAACTGAAATCTGCTCGATTTGAGGAAGCTCTCCACAACTCCATAGAAGCCTCCCTCAGATGTAGTAGTGTGGTACCACGGC DEEVSGSSKTITAEIPGHLDPGFLASDKTSAGNAPLNEEINIASSDSEVEIVGVQEHAr|ctksfkqvki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9678 C18orf25::GREB1L ENSG00000152242.11::ENSG00000141449.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1718 TRUE 679 C18orf25 ENSG00000152242.11 protein_coding + + chr18:46173553-46266992:+ chr18:46216595:+ chr18:43753519-43846955:+ chr18:43796561:+ GREB1L ENSG00000141449.16 protein_coding + + chr18:21242232-21526112:+ chr18:21366027:+ chr18:18822193-19106073:+ chr18:18945988:+ chr18:46262546,chr18:46262546 chr18:21358264,chr18:21358261 NA NA chr18:43842509,chr18:43842509 chr18:18938225,chr18:18938222 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none E3_ubiquitin-protein_ligase_Arkadia_N-terminus(100%)|GREB1_N-terminal_region(100%) RNF111_N(100%)|GREB1(100%) 1 0 4 190 40 ENST00000615052.5 ENST00000424526.7 downstream upstream duplicates(1) ATgGGAGCCAAAAGCACAAGGAGAGGATCAGGCTACTGAGGCAGAAACGGGAGGCTGCTGCAAGGAAGAAATATAACCTGCTGCAGGACAGTAGTACCAGTGATAGTGACCTGACTTGTGACTCAAGCACGAGCTCATCAGATGATGATGAAGAGGTTTCAGGGAGCAGCAAGACAATCACTGCAGAGATACCAG|GTGCACAAAAAGCTTTAAACAAGTTAAAATCTAGGCAACAGACTCCCTGAAGTGTTGACTGCCCAACTTAATCATGACTGTGATTCAAAAATGTTAATAAATAAACCAAG___GTGTAGATCATGGGGAATTCATATGCTGGGCAACTGAAATCTGCTCGATTTGAGGAAGCTCTC gSQKHKERIRLLRQKREAAARKKYNLLQDSSTSDSDLTCDSSTSSSDDDEEVSGSSKTITAEIP|gaqkalnklksrqqtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9679 C18orf25::GREB1L ENSG00000152242.11::ENSG00000141449.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1718 TRUE 679 C18orf25 ENSG00000152242.11 protein_coding + + chr18:46173553-46266992:+ chr18:46216595:+ chr18:43753519-43846955:+ chr18:43796561:+ GREB1L ENSG00000141449.16 protein_coding + + chr18:21242232-21526112:+ chr18:21383510:+ chr18:18822193-19106073:+ chr18:18963471:+ chr18:46262546,chr18:46262546 chr18:21358264,chr18:21358261 NA NA chr18:43842509,chr18:43842509 chr18:18938225,chr18:18938222 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none E3_ubiquitin-protein_ligase_Arkadia_N-terminus(100%)|GREB1_N-terminal_region(100%) RNF111_N(100%)|GREB1(100%) 2 0 1 190 32 ENST00000615052.5 ENST00000424526.7 downstream upstream none CCGATCTGAAAGTGAAACTTCCACTATGGCTGCCAAGAAAAACCGGCAATCCAGTGATAAACAGAATGGCCGAGTCGCCAAGGTTAAAGGTCATCGGAGCCAAAAGCACAAGGAGAGGATCAGGCTACTGAGGCAGAAACGtGAGGCTGCTGCAAGGAAGAAAgATAACCTGCTGCAGGAaAGTAGTACCAGT...GTGACCTGACTTGTGACTCAAGCACGAGCTCATCAGATGATGATGAAGAGGTTTCAGGGAGCA?CAAGACAATCACTGCAGAGATACCAG|GTGTAGATCATGGGGAATTCATATGCTGGGCAACTGAAATCTGCTCGATTTGAGGAAGCTCTCCACAACTCCATAGAAGCCTCCCTCAGATGTAGTAGTGTGGTAC DLTCDSSTSSSDDDEEVSGS?KTITAEIP|gvdhgeficwateicsi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9680 DPP9::FBN3 ENSG00000142002.19::ENSG00000142449.13 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPP9 ENSG00000142002.19 protein_coding - - chr19:4674341-4724673:- chr19:4682696:- chr19:4674353-4724685:- chr19:4682708:- FBN3 ENSG00000142449.13 protein_coding - + chr19:8065402-8149592:- chr19:8110828:+ chr19:8130286-8214476:- chr19:8175712:+ chr19:4680285,chr19:4680289 chr19:8106297,chr19:8106293 NA NA chr19:4680297,chr19:4680301 chr19:8171181,chr19:8171177 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region(100%),Prolyl_oligopeptidase_family(66%)| DPPIV_N(100%),Dpp_8_9_N(100%),Peptidase_S15(100%),Peptidase_S9(25%)| 5 11 10 867 56 ENST00000601130.6 unknown upstream upstream mismatches(1) AACCAAATG___GGCCAGGTGGAGATCGAGGACCAGGTGGAGGGCCTGCAGTTCGTGGCCGAGAAGTATGGCTTCATCGACCTGAGCCGAGTTGCCATCCATGGCTGGTCCTACGGGGGCTTCCTCTCGCTCATGGGGCTAATCCACAAGCCCCAGGTGTTCAAG___GTGGCCATCGCGGGTGCCCCGGTCACCGTCTGGATGGCCTACGACACAGGGTACACTGAGCGCTACATGGACGTCCCTGAGAACAACCAGCACGGCTATGAGGCGGGTTCCGTGGCCCTGCACGTGGAGAAGCTGCCCAATGA|CCCAGATGACCTCACACCTGTGCAGTTGCCACCCCCTCGGTCCAGTTCGTAGCCACCATTGCAGATGCAGCGGAACATTCCAG___CGGTACCCGCCGGGCGCATTGAGGCACTGCCCGTTGTCACAGAGGTCCACGTTCTCGGCACATTCATCCCTGTCTGAGGGGCCCCAAGATTCGGA...CGGTG?AC?AGGAC NQMGQVEIEDQVEGLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQHGYEAGSVALHVEKLPNd|pddltpvqlppprsss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9681 ENSG00000227775::PRKCZ ENSG00000227775.3::ENSG00000067606.17 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 981 FALSE NA FALSE NA ENSG00000227775 ENSG00000227775.3 transcribed_processed_pseudogene + + chr1:1724512-1737251:+ chr1:1724763:+ chr1:1655951-1668690:+ chr1:1656202:+ PRKCZ ENSG00000067606.17 protein_coding + + chr1:2050411-2185395:+ chr1:2098347:+ chr1:1981850-2116834:+ chr1:2029786:+ chr1:1725252 chr1:2097809 NA NA chr1:1656691 chr1:2029248 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion/read-through high none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 10 2 13 77 96 ENST00000577672.1 ENST00000495347.5 downstream upstream duplicates(1),mismatches(10) TCCGGTAGCGAAGCCCGCGCCTGTGCCAAGGCTTGCGAGCAGAATGCCTTCGC___...CCGAGCAGAGCGACGCCGACTTTTGGAGCAGTTTGCGCCTGCGCGGAACGCGT...GCCGGCTTCCGG...___GACGCCCGCATTCCACCCCCTTGACCGCTGGGACCCCTAGTGGCGGG?GGG?GGAGCGCGCTCCATTTACCTGCTGGTTACCTCGTGAGGCGCCTCAG|GAGCGGTGCCGCTGGCCTGTGGCTTCTGCAGGGACAAGTAGTGGCTGTGGCCGGGAGGCGTTCGGCAGCTGTGCTTCAGCCCCGGCCCCAGCTTCAGCTCTTCGAGTTGCTGGCTTCTCTAAGGCCTGTCCTGAAGTGGCCTGGAGACTGCTGAGTTACTTCTGGAATCTGCACCGTGAAAGTGAAACCTGGACCATGATGTGAGGCTGGTGAGAGGGTGCC??CTGCCGTCACCCCCGGCCTTGTAGAAAACTCATTCCAATGGCCCTCTGGTTCTCACTCAGGACCAAATAGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C zeta type AGC PKC PKCi Q05513 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9682 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17696210:+ chr22:18111621-18213621:+ chr22:18178976:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none Apoptosis_regulator_proteins__Bcl-2_family(50%)|Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(64%),Zinc_finger__ZZ_type(100%) Bcl-2(53%)|Bromodomain(100%),Creb_binding(100%),DUF902(100%),HAT_KAT11(100%),KIX(100%),ZZ(100%),zf-TAZ(9%) 8 3 9 41 153 ENST00000543133.5 ENST00000263253.9 downstream upstream mismatches(3) AGAAATTTTATTAAAAGTTAAAACTGAAATTGAAGAAGAGCTAAAATCTCTGGACAAAGAAATTTCTGAAG___...GAAAAAGTGTCCCAGGAACTGAAAGAGCCTCTCCATAAAGCATTGCAAATGCTCCTGAGCCA___GCCAGTGACATATCAGGCATTTCGGGAATGTACACTGGAGACCACAGTTCATGCCAGCGGCTGGAATAAG|TGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGC___CAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 9683 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 982 TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17689142:+ chr22:18111621-18213621:+ chr22:18171908:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Apoptosis_regulator_proteins__Bcl-2_family(26%)|Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(64%),Zinc_finger__ZZ_type(100%) Bcl-2(0%)|Bromodomain(100%),Creb_binding(100%),DUF902(100%),HAT_KAT11(100%),KIX(100%),ZZ(100%),zf-TAZ(9%) 7 6 6 53 153 ENST00000317582.10 ENST00000263253.9 downstream upstream duplicates(1),mismatches(2) TCTTTCCTCACCCCAAG___GGGTTCAACTAGATATAGCTTCACAATCTCTGGATCAAGAAATTTTATTAAAAGTTAAAACTGAAATTGAAGAAGAGCTAAAATCTCTGGACAAAGAAATTTCTGAAG___CCTTCACCAGCACAGGCTTTGACCGTCACACTTCTCCAGTGTTCAGCCCTGCCAATCCAGAAAGCTCAATGGAAGACTGCTTGGCCCATCTTGGAGAAAAAGTGTCCCAGGAACTGAAAGAGCCTCTCCATAAAGCATTGCAAATGCTCCTGAGCCA|TGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGC___CAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTA...CACTGTTAGTCAGATTGATCCCAGCTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCGACACAACCCCAGGTGCAAGCAAAGAACCAGCAGAATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATGAGCAACATGA___GTGCTAG...GAGTAAATGGAGGTGTAGGAGTTCAAACGCCGAGTCTTCTTTCTGACTCAATGTTGCATTCAGCCATAAATTCTCAAAA___CCCAATGATGAGTGAAAATGCC LSSPQGVQLDIASQSLDQEILLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSMEDCLAHLGEKVSQELKEPLHKALQMLLSh|gtlcifstnhftleelykt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 9684 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17683321:+ chr22:18111621-18213621:+ chr22:18166087:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(64%),Zinc_finger__ZZ_type(100%) |Bromodomain(100%),Creb_binding(100%),DUF902(100%),HAT_KAT11(100%),KIX(100%),ZZ(100%),zf-TAZ(9%) 1 0 3 28 153 ENST00000337612.9 ENST00000263253.9 downstream upstream none GCCGCCGCCGCCTCTTTCATCTCTTCTGGGGCAGGGGCCAGGGCCAG___GTTTTACACATCCATAAcTAGACCTTTTTGGAGCCTCACCAGCCAATTCAATGG...AAACAAAGTATGTTGTTCTCAGCTACTTGGGACTCCTCTCTCAAGAGAAGCTGCAAGAGCAACATCTTTCCTCACCCCAAG___GGGTTCAACTAGATATAGCTTCACAATCTCTGGATCAAGAAATTTTATTAAAAGTTAAAACTGAAATTGAAGAAGAGCTAAAATCTCTGGACAAAGAAATTTCTGAAG|TGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGC___CAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTA TKYVVLSYLGLLSQEKLQEQHLSSPQGVQLDIASQSLDQEILLKVKTEIEEELKSLDKEISE|vAHCASSRQIISHWKNCTRHDCPVCLPLKNAGDKRNQQPILTGAPVGLGNPSSLGVGQQSAPN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 9685 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17655832:+ chr22:18111621-18213621:+ chr22:18138598:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(64%),Zinc_finger__ZZ_type(100%) |Bromodomain(100%),Creb_binding(100%),DUF902(100%),HAT_KAT11(100%),KIX(100%),ZZ(100%),zf-TAZ(9%) 1 1 1 48 153 ENST00000337612.9 ENST00000263253.9 downstream upstream none GCCAATTCAATGGCGTCCTCTTCTACTGTGCCTCTGGGATTTCACTATGAAACAAAGTATGTTGTTCTCAGCTACTTGGGACTCCTCTCTCAAGAGAAGCTGCAAGAGCAACATCTTTCCTCACCCCAAG|TGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGtAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCcGG...AGTCTGCCCaCAACCTAAGCACTGTTAGTCAGATTGATCCCAGCTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCG MASSSTVPLGFHYETKYVVLSYLGLLSQEKLQEQHLSSPQ|vAHCASSRQIISHcKNCTRHDCPVCLPLKNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 9688 ZDHHC9::ENSG00000235189 ENSG00000188706.13::ENSG00000235189.2 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC9 ENSG00000188706.13 protein_coding - - chrX:129803288-129843909:- chrX:129841779:- chrX:128937264-128977885:- chrX:128975755:- ENSG00000235189 ENSG00000235189.2 lncRNA - - chrX:129869064-129957528:- chrX:129929895:- chrX:129003040-129091504:- chrX:129063871:- chrX:129840675,chrX:129840679 chrX:129931709,chrX:129931710 NA NA chrX:128974651,chrX:128974655 chrX:129065685,chrX:129065686 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 7 4 6 474 8 ENST00000357166.11 ENST00000432062.1 upstream downstream duplicates(2),mismatches(1) CAATCATGTCTGTGATGGTGGTGAGAAAGAAGGTGACACGGAAATGGGAGAAACTCCCAGGCAGGAACACCTTTTGCTGTGATGGCCGCGTCATGATGGCCCGGCAAAAGGGCATTTTCTACCTGACCCTTTTCCTCATCCTGGGGACATGTACACTCTTCTTCGCCTTTGA|GACCAACTACATAATCCTTGGTAAGAAAAGGAGGTGGCCCTGACAAGTGCAACTCGAGAAATGCAATGCTGTAGAGTCCAAAGGTGTCTGACTTGAACGAAATGATCCCACTGGGGGACAATGCAACATATACTCCAGG...___GTGAACTGGAACTTACACCTTGCTTCTCCTGTTCTCAGGAGACTTGGACTGGAACTAT MSVMVVRKKVTRKWEKLPGRNTFCCDGRVMMARQKGIFYLTLFLILGTCTLFFAFe|tnyiilgkkrrwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9692 KDM4B::CYP4F22 ENSG00000127663.15::ENSG00000171954.13 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM4B ENSG00000127663.15 protein_coding + + chr19:4969113-5153598:+ chr19:5144902:+ chr19:4969124-5153609:+ chr19:5144913:+ CYP4F22 ENSG00000171954.13 protein_coding + + chr19:15508525-15552317:+ chr19:15523693:+ chr19:15619336-15663128:+ chr19:15634504:+ chr19:5145256,chr19:5145432,chr19:5145257 chr19:15523351,chr19:15523379,chr19:15523349 NA NA chr19:5145267,chr19:5145443,chr19:5145268 chr19:15634162,chr19:15634190,chr19:15634160 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none JmjC_domain__hydroxylase(100%),Jumonji_domain-containing_protein_2A_Tudor_domain(90%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%),jmjN_domain(100%)|Cytochrome_P450(100%) JmjC(100%),JmjN(100%),PHD_2(100%),Tudor_2(3%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)|p450(100%) 1 1 4 69 6 ENST00000159111.9 ENST00000269703.8 downstream upstream none TACTACCGCTGTCGCGTCATCGGTGCCGCCTCGCAGACCTGCTACGAAGTGAACTTCGACGATGGCTCCTACAGCGACAACCTGTACCCTGAGAGCATCACG___AGTAGGGACTGTGTCCAGCTGGGACCCCCTTCCGAGGGGGAGCTGGTGGAGCTCCGGTGGACTGACGGCAACCTCTACAAGGCCAAGTTCATCTCCTCCGTCACCAGCCACATCTACCAG|GAGCTGGCCCTAAAGCAAGGACCTGAGTGCAAGTAATTTTTTTGGGAAGTAATAACAGAAAATACCAGCAAGGAAGAAGACAGTGAACCCAAAAGAATTGAAAACAG___GATGCTGCCCATCACAGACCGCCTGCTGCAC YYRCRVIGAASQTCYEVNFDDGSYSDNLYPESITSRDCVQLGPPSEGELVELRWTDGNLYKAKFISSVTSHIYQ|elalkqgpeck* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9693 MRPS14::TNR ENSG00000120333.4::ENSG00000116147.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1721 TRUE 681 MRPS14 ENSG00000120333.4 protein_coding - - chr1:175010789-175023425:- chr1:175023364:- chr1:174979925-174992561:- chr1:174992500:- TNR ENSG00000116147.18 protein_coding - - chr1:175315194-175743595:- chr1:175408274:- chr1:175284330-175712731:- chr1:175377410:- chr1:175022772,chr1:175022779 chr1:175411598,chr1:175411602 NA NA chr1:174991908,chr1:174991915 chr1:175380734,chr1:175380738 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none |EGF-like_domain(100%),Fibrinogen_beta_and_gamma_chains__C-terminal_globular_domain(100%),Fibronectin_type_III_domain(100%),Tenascin_EGF_domain(100%) |EGF_2(100%),EGF_Tenascin(100%),Fibrinogen_C(100%),fn3(100%) 1 5 0 356 12 ENST00000476371.1 unknown upstream downstream none GCGGTTTGTAGTTTGTAGCGGACAACATGGCGGCCTTCATGCTGGGCTCGCTGCTGCGGACGTTCAAGCAG|GGATCTACTTATCCACTTATTCAACAACTATGCACTGAGCACTCTCGCCGTCCTGAAGCGACGGTCACACATTGCAGATAAGACACGGTCTGACCGACAAGGACTTAGCAGTCCAGGTGGGGAGAAGCAGGCAAAGGAAcCCCACGGTCTAGCATGGCAAGTGCTGTCAGAAGTGGGGCCTGGAAGAGAG...CCTAGCAAAATTTTCTAATCGCGATATTCCTGGGAAGATCTTAGAAATTACACAGTTTCCATCAAAGACAAGAGAAAATTGAACACTCTTTTCAAGAAAAG...TCTTAACCTCTCTTGGAAGAACTTCCTCCATTAGAAGATGGGGCTATTCATAGTGACCCATCATAAGGTTGTCCTGAGGGTCATGTAGACTCCTGTGTGAG MAAFMLGSLLRTFKQ|gstypliqqlctehsrrpeatvthcr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9694 MRPS14::TNR ENSG00000120333.4::ENSG00000116147.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1721 TRUE 681 MRPS14 ENSG00000120333.4 protein_coding - - chr1:175010789-175023425:- chr1:175023364:- chr1:174979925-174992561:- chr1:174992500:- TNR ENSG00000116147.18 protein_coding - - chr1:175315194-175743595:- chr1:175406777:- chr1:175284330-175712731:- chr1:175375913:- chr1:175022772,chr1:175022779 chr1:175411598,chr1:175411602 NA NA chr1:174991908,chr1:174991915 chr1:175380734,chr1:175380738 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication medium none |EGF-like_domain(100%),Fibrinogen_beta_and_gamma_chains__C-terminal_globular_domain(100%),Fibronectin_type_III_domain(100%),Tenascin_EGF_domain(100%) |EGF_2(100%),EGF_Tenascin(100%),Fibrinogen_C(100%),fn3(100%) 0 44 0 356 113 ENST00000476371.1 ENST00000367674.7 upstream downstream duplicates(1),inconsistently_clipped(4),mismatches(2) GGACAACATGGCGGCCTTCATGCTGGGCTCGCTGCTGCGGACGTTCAAGCAG|ATTCCCACAACTCCATGCTGTGTGCTGCAGGCTGGTCCTGAACCCAGATCTCTGGCTGAGAGGATGGGGGCAGATGGGGAAACAGTGGTTCTGAAGAACATGCTCATTGGCgTCAACCTGATCCTTCTGGGCTCCATGATCAAGCCTTCAGAGTGTCAGCTGGAGGTCACCACAGAAAGGGTCCAGAGACAGTCAGTGGAGGAGGAGGGAGGCATTGCCAACTACAACACgTCCAGCAAAGAGCAGCCTGTGGTCTTCAACCACGTGTACAACATTAACGT MAAFMLGSLLRTFKQ|ipttpccvlqagpeprslaerMGADGETVVLKNMLIGvNLILLGSMIKPSECQLEVTTERVQRQSVEEEGGIANYNTSSKEQPVVFNHVYNIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9695 MRPS14::TNR ENSG00000120333.4::ENSG00000116147.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1721 TRUE 681 MRPS14 ENSG00000120333.4 protein_coding - - chr1:175010789-175023425:- chr1:175023272:- chr1:174979925-174992561:- chr1:174992408:- TNR ENSG00000116147.18 protein_coding - - chr1:175315194-175743595:- chr1:175406777:- chr1:175284330-175712731:- chr1:175375913:- chr1:175022772,chr1:175022779 chr1:175411598,chr1:175411602 NA NA chr1:174991908,chr1:174991915 chr1:175380734,chr1:175380738 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |EGF-like_domain(100%),Fibrinogen_beta_and_gamma_chains__C-terminal_globular_domain(100%),Fibronectin_type_III_domain(100%),Tenascin_EGF_domain(100%) |EGF_2(100%),EGF_Tenascin(100%),Fibrinogen_C(100%),fn3(100%) 2 0 0 23 113 ENST00000367677.3 ENST00000367674.7 upstream downstream none CTTCATGCTGGGCTCGCTGCTGCGGACGTTCAAGCAGGTCAGGCCTCTACTTTTATCCACACCGCTACCCCTCACCGCTGAATCTCATAACCCACGGGTCCCCCACGGCTCTGCCACCTGTAGTGCTCG|ATTCCCACAACTCCATGCTGTGTGCTGCAGGCTGGTCCTGAACCCAGATCTCTGGCTGAGAGGATGGGGGCAGATGGGGAA FMLGSLLRTFKQVRPLLLSTPLPLTAESHNPRVPHGSATCSAr|fpqlhavccrlvlnpdlwlrgwgqmg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9712 GHRLOS::TATDN2 ENSG00000240288.8::ENSG00000157014.11 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GHRLOS ENSG00000240288.8 lncRNA + + chr3:10285754-10294903:+ chr3:10288106:+ chr3:10327438-10336587:+ chr3:10329790:+ TATDN2 ENSG00000157014.11 protein_coding + + chr3:10248023-10281218:+ chr3:10270131:+ chr3:10289707-10322902:+ chr3:10311815:+ chr3:10292631,chr3:10292630 chr3:10265919,chr3:10265915 NA NA chr3:10334315,chr3:10334314 chr3:10307603,chr3:10307599 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |TatD_related_DNase(100%) |TatD_DNase(100%) 1 1 3 18 249 ENST00000662597.1 ENST00000287652.8 downstream upstream none GCAAATGCGGGGTGGCTGATCACCTGGCAGACATCTTAGGAAACAGGAGCACCGGTCTGGGAAACTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGCAA|CATAAAGATAGGGAGGTGGTGATGGAGCACCCCTCTTCTGGAAG...CAGTCAGATTCTCTCAGGAGGAACCTGcCTCCCTGAAACCTTCAGCCGTTCCGGAGCCTTCTTCCTTCACCACCGACTATGTCATGTACCCTCCTCATTTG...AGCCGGAGCCGCAaGAGTGATTATTCCCCCAACTCTACAGGGAGTGTCCAAAACACCTCCAGAGACATGGAGGCCTCAGAGGAAGGCTGGTCCCAGAATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-12127 chr3:10280351-10280452:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9713 GHRLOS::ENSG00000272410 ENSG00000240288.8::ENSG00000272410.5 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GHRLOS ENSG00000240288.8 lncRNA + + chr3:10285754-10294903:+ chr3:10288106:+ chr3:10327438-10336587:+ chr3:10329790:+ ENSG00000272410 ENSG00000272410.5 protein_coding + + chr3:10249372-10285796:+ chr3:10270131:+ chr3:10291056-10327480:+ chr3:10311815:+ chr3:10292631,chr3:10292630 chr3:10265919,chr3:10265915 NA NA chr3:10334315,chr3:10334314 chr3:10307603,chr3:10307599 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none |TatD_DNase(100%) 1 1 3 18 249 ENST00000662597.1 ENST00000437082.5 downstream upstream none GCAAATGCGGGGTGGCTGATCACCTGGCAGACATCTTAGGAAACAGGAGCACCGGTCTGGGAAACTGCTGGCCTGGCCTAACACCTGGCGCTGTGGTGCAGGCAA|CATAAAGATAGGGAGGTGGTGATGGAGCACCCCTCTTCTGGAAG...CAGTCAGATTCTCTCAGGAGGAACCTGcCTCCCTGAAACCTTCAGCCGTTCCGGAGCCTTCTTCCTTCACCACCGACTATGTCATGTACCCTCCTCATTTG...AGCCGGAGCCGCAaGAGTGATTATTCCCCCAACTCTACAGGGAGTGTCCAAAACACCTCCAGAGACATGGAGGCCTCAGAGGAAGGCTGGTCCCAGAATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9722 ELF2::EGFLAM ENSG00000109381.21::ENSG00000164318.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1725 TRUE 682 ELF2 ENSG00000109381.21 protein_coding - - chr4:139028112-139177218:- chr4:139058669:- chr4:139949266-140098372:- chr4:139979823:- EGFLAM ENSG00000164318.18 protein_coding + + chr5:38258409-38465480:+ chr5:38391798:+ chr5:38258511-38465582:+ chr5:38391900:+ NA NA NA NA NA NA NA NA sense sense unknown 3'UTR intron translocation low none Ets-domain(100%),Transcription_factor_protein_N_terminal(100%)|EGF-like_domain(100%),Laminin_G_domain(100%) Elf-1_N(100%),Ets(100%)|EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 0 0 2 205 3 ENST00000394235.6 unknown upstream upstream mismappers(1) GGGAAATGAACTACATATTGAGATGCTGACAGAAAACTGCCTCTTACAGTAGGAAACAACTGAACCCATCAATAAGAAAAAGGATCGAAAGGGACCAAGCAGCTCACTACGATATCAAGTTACACTAAGACTTGGAACACTAACATTCT|ACACAGTTTTACTCTGCCGCCCAGGCTGGACTGCAGTGGCGCAACCTTGGCTCACTGCAAACTCTACCTCCCAGGTTCAAGTGATTCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9723 ELF2::EGFLAM ENSG00000109381.21::ENSG00000164318.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1725 TRUE 682 ELF2 ENSG00000109381.21 protein_coding - - chr4:139028112-139177218:- chr4:139060324:- chr4:139949266-140098372:- chr4:139981478:- EGFLAM ENSG00000164318.18 protein_coding + + chr5:38258409-38465480:+ chr5:38406126:+ chr5:38258511-38465582:+ chr5:38406228:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Ets-domain(100%),Transcription_factor_protein_N_terminal(100%)|EGF-like_domain(100%),Laminin_G_domain(100%) Elf-1_N(100%),Ets(100%)|EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 1 0 1 243 9 ENST00000394235.6 ENST00000322350.10 upstream upstream none GGCTTGTATATCAGTTCAAGGATATGCCGAAAAACATAGTGGTCATAGATGATGACAAAAGTGAAACCTGTAATGAAGATTTAGCAGGAACTACTGATGAAAAATCATTAGAACGAGTGTCACTGTCTGCAGAAAGTCTCCTGAAAGCAGCATCCTCTGTT...GCACGATGCTTCATCCAGGTCTCCTACTcCCACTtCATCTGTGTCAGCAACAGCAGCTCCAAG|GCCCTGAGGAGGCGGGAAGTGGCCGCTATGGACCCCG...TTTGGATATTTCCTTTGAGGAG___GTTAAACCAtTTCCTGCTACCAAAGGAGGGAATAAGAAATTTTTGGTGGAAAGCAAGAAGATGTCTATATCTAACCCAA HDASSRSPTpTsSVSATAAPr|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9724 MADCAM1-AS1::PIP5K1C ENSG00000266933.2::ENSG00000186111.11 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MADCAM1-AS1 ENSG00000266933.2 lncRNA - - chr19:490046-507833:- chr19:507376:- chr19:490046-507833:- chr19:507376:- PIP5K1C ENSG00000186111.11 protein_coding - - chr19:3630183-3700468:- chr19:3661083:- chr19:3630181-3700466:- chr19:3661081:- chr19:504285,chr19:504288 chr19:3661872,chr19:3661872 NA NA chr19:504285,chr19:504288 chr19:3661870,chr19:3661870 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Phosphatidylinositol-4-phosphate_5-Kinase(100%) |PIP5K(100%) 1 1 0 6 207 ENST00000592413.2 ENST00000679828.1 upstream downstream none CGGAAGCACCGCCATATTCCACTGTGCGCTAGAGCCCCCCCAAGGCGGCCATCTTGATTAAGGGCAGAGGGCACCGGTATCCCGCTGGGAGACTTTGGGAAGTGACAAGG|CGAAGGCAGCAACCTCACCCCCGCCCACCACTTCCAGGACTTCCGCTTCAAGACCTATGCACCTGTCGCCTTCCGCTACTTCCGGGAGCTCTTTGGGATCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9732 ENSG00000269693::ELL ENSG00000269693.1::ENSG00000105656.13 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000269693 ENSG00000269693.1 protein_coding - - chr19:12525720-12580975:- chr19:12577505:- chr19:12636534-12691789:- chr19:12688319:- ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18461853:- chr19:18553473-18632926:- chr19:18572663:- chr19:12574238,chr19:12574238,chr19:12574240 chr19:18462102,chr19:18462101,chr19:18462101 NA NA chr19:12685052,chr19:12685052,chr19:12685054 chr19:18572912,chr19:18572911,chr19:18572911 NA NA sense sense unknown 3'UTR/splice-site intron duplication low none |Occludin_homology_domain(100%),RNA_polymerase_II_elongation_factor_ELL__(47%) zf-C2H2(16%),zf-C2H2_6(12%)|ELL(14%),Occludin_ELL(100%) 1 0 0 5 109 ENST00000593682.1 ENST00000594635.6 upstream downstream none TTAGAAGGGAGGTGGCAGCATTGAGGGAAACCAGGTCACCATCCACCCTCGTAACAACAGTCTCCCTGGGTGGGTCCCAGAAGTGATCTTTGTGTCGCTCG...GCTACTGTGGAGATGCAGTGGAGGACCTGGTGGCTGAGCCAGGAGATGCACAC___cTTCGCTTCTCTCACCAGGAACATTTAT|GGCAAGAAGGTTCAGTTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation 9736 ARNT::MRPS21 ENSG00000143437.21::ENSG00000266472.6 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARNT ENSG00000143437.21 protein_coding - - chr1:150809713-150876708:- chr1:150852762:- chr1:150782189-150849184:- chr1:150825238:- MRPS21 ENSG00000266472.6 protein_coding + - chr1:150293861-150308979:+ chr1:150294337:- chr1:150266281-150281414:+ chr1:150266757:- chr1:150849314,chr1:150849319 chr1:150295058,chr1:150295060 NA NA chr1:150821790,chr1:150821795 chr1:150267478,chr1:150267480 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR deletion/5'-5' high none none none 45 25 43 371 854 ENST00000358595.10 unknown upstream downstream duplicates(17),mismatches(5) CTGCGGCCATGGCGGCGACTACTGCCAACCCCG___AAATGACATCAGATGTACCATCACTGGGTCCAGCCATTGCCTCTGGAAACTCTGGACCTGGAATTCAAGGTGGAGGAGCCATTGTCCAGAGGGCTATTAAGCGGCGACCAGG___GCTGGATTTTGATGATGATGGAGAAGGGAACAGTAAATTTTTGAG|AGCCTAAAGGATGATGGAGAAAGGGCGAGGAAAGCAGAAAGAGAAACGCAACATAATACAAACTACACCGCGCGGCTTATTTAGGATTTGGAAATTCAACATGCTCAGGGACGCGCGAGATGGAGCACATGGAAGTCATCCTAGAAAGTAGACGTGAATCGTTGTCTCTTATTCTCACTGCCAGTCCAAATCCTCGCATAGAGAAGAAAAGAGATGGCAGCAGGGCGTTACCACAAAGACGCGTCGCCGGGCATGAGAAGGACA MAATTANPEMTSDVPSLGPAIASGNSGPGIQGGGAIVQRAIKRRPGLDFDDDGEGNSKFLr|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE aryl hydrocarbon receptor nuclear translocator 1 Yes AML leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9740 MAGI2::SEMA3A ENSG00000187391.23::ENSG00000075213.11 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAGI2 ENSG00000187391.23 protein_coding - - chr7:78017055-79453667:- chr7:78194874:- chr7:77646372-79082983:- chr7:77824191:- SEMA3A ENSG00000075213.11 protein_coding - - chr7:83955777-84492724:- chr7:84060558:- chr7:83585093-84122040:- chr7:83689874:- chr7:78185842,chr7:78185845 chr7:84061114,chr7:84061114 NA NA chr7:77815159,chr7:77815162 chr7:83690430,chr7:83690430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Guanylate_kinase(100%),PDZ_domain(45%),Unstructured_region_on_MAGI_(100%),WW_domain(100%)|Sema_domain(78%) Guanylate_kin(100%),MAGI_u1(100%),PDZ(62%),PDZ_6(75%),WW(100%)|Ig_6(100%),Sema(50%) 1 4 4 3 52 ENST00000354212.9 ENST00000265362.9 upstream downstream duplicates(2) GAGGCCTTTGACCCACGGAAGCCTGATCCATATGAGCTCTACGAGAAATCTAGGGCCATTTATGAAAGTAGGC|GACAATATTTTTAAGCTGGAGAACTCACATTTTGAAAACGGCCGTGGGAAGAGTCCATATGACCCTAAGCTGCTGACAGCATCCCTTTTAATAG___ATGGAGAATTATACTCTGGAACTGCAGCTGATTTTATGGGGCGAGACTTTGCTATCTTCCGAACTCTTGGGCACCACCACCCAATCAGGACAGAGCAGCATGATTCCAGGTGGCTCAATG___ATCCAAAGTTCATTAGTGCCCACCTCATCTCAGAGAGTGACAATCCTGAAGATGACAAAGTATACTTTTTC...GATGTCATTTTCCCATAACAGCTTTGCTTTTTAAAATTTTCTACCTGTGTGCATATACAATAAAAATTATGGCTAAAGCTTGACTCACATAACAAATAAA EAFDPRKPDPYELYEKSRAIYESR|rqyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9741 SEMA3A::MAGI2 ENSG00000075213.11::ENSG00000187391.23 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SEMA3A ENSG00000075213.11 protein_coding - - chr7:83955777-84492724:- chr7:84110470:- chr7:83585093-84122040:- chr7:83739786:- MAGI2 ENSG00000187391.23 protein_coding - - chr7:78017055-79453667:- chr7:78369213:- chr7:77646372-79082983:- chr7:77998530:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Sema_domain(21%)|PDZ_domain(83%) Sema(16%)|PDZ(99%),PDZ_6(100%) 3 1 1 99 3 ENST00000265362.9 ENST00000354212.9 upstream downstream mismatches(1) CTTGATTGTCTGCATTTATGAATGAAACTGACCTAAATCACCTGTTACCTCCAGTTTCCAGATTGTTTGAACTTCTCTGGCCGCACAATACAGGAAGGAAG...TTTTCATTCGACCTGGTTAATATCAAGGATTTTCAAAAG___ATTGTGTGGCCAGTATCTTACACCAGAAGAGATGAATGCAAGTGGGCTGGAAAAGACATCCTG___AAAGAATGTGCTAATTTCATCAAGGTACTTAAGGCATATAATCAGACTCACTTGTACGCCTGTGGAACGGGGGCTTTTCATCCAATTTGCACCTACATTGAAATTGGACATCATCCTGAG|AGCTTCCATATGGCTGGGAAAAAATCGATGATCCCATTTATGGCACTTATT...ATAACATGCCCCACACAGAACTTGGAACAAAGCCCCTGCAGGCCCCAGGTTTCCGAG___AAAAACCACTCTTCACCCGGGATGCATCCCAGTTGAAGGGAACA FSFDLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEIGHHPE|sfhmagkksmipfmal NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9744 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 1727 TRUE 683 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60787431:- chr5:60047618-60140101:- chr5:60083258:- chr5:60672692 chr5:60789155 NA NA chr5:59968519 chr5:60084982 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(98%)|GNS1/SUR4_family(100%) DEP(0%)|ELO(100%) 4 3 2 319 21 ENST00000265036.10 ENST00000425382.5 upstream downstream duplicates(1),mismatches(2) GATGCCGTTACGGAAACATCGCTGTCGTTTCAAGAGCTATGAGCATTGTTTCACAGCGGCCGAAGCTGTGGATTGGCTGCATGAGCTGCTGAGGTGCAGTCAAAACTTCGGCCCTGAAGTGACCCGCAAACAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTGAGGAAGATTTTGAAGACAATCGTCACTTATACAG|AACCCATTAAAAGAGCCAGTAAATCCTGTGGAAAATGGCCTTCAGTGATCTTACATCGAGGACTGTGCATCTTTATGATAATTGGATCAAAGATGCTG___ATCCAAGAGTTGAAGATTGGCTCCTCATGTCCTCGCCTCTGCCACAAACCATCCTCCTAGGATTCTATGTCTATTTTGTCACTTCCTTGGGACCAAAGCTCATGGAAAATCGCAAGCCCTTTGAACTCAAGAAAGCAATGATAACGTACAATTTTTTCATAGTACTCTTTTCTGTGTATATGTGTTATGAGGCAAGTGTCTTCA MPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYr|th* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 TRUE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9745 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 1727 TRUE 683 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60700046:- chr5:59892739-59996017:- chr5:59995873:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60787431:- chr5:60047618-60140101:- chr5:60083258:- chr5:60672692 chr5:60789155 NA NA chr5:59968519 chr5:60084982 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |GNS1/SUR4_family(100%) |ELO(100%) 0 1 0 195 21 ENST00000265036.10 ENST00000504455.5 upstream downstream none CCATGGAGCATCGCATCGTGGGGCCCGGGCCGTACCGAGCTACCAGGCTG|AACCCATTAAAAGAGCCAGTAAATCCTGTGGAAAATGGCCTTCAGTGATCT...CCTTGGGACCAAAGCTCATGGAAAATCGCAAGCCCTTTGAACTCAAGAAAGCAATGATAAC___TTTGTGATGTCTGGCTGGGGTATAGGTTATTCATTTCaAT MEHRIVGPGPYRATRL|nplkepvnpvenglq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 TRUE 60083258 TRUE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9747 NEK8::SUPT6H ENSG00000160602.14::ENSG00000109111.15 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 985 TRUE 1728 TRUE 684 NEK8 ENSG00000160602.14 protein_coding + + chr17:28725897-28743455:+ chr17:28725972:+ chr17:27052915-27070473:+ chr17:27052990:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28681256:+ chr17:26989216-27029697:+ chr17:27008274:+ chr17:28733962,chr17:28733962 chr17:28680124,chr17:28680121 NA NA chr17:27060980,chr17:27060980 chr17:27007142,chr17:27007139 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |HHH_domain(100%),Helix-hairpin-helix_motif_______________________(100%),Holliday-junction_resolvase-like_of_SPT6_(100%),S1_RNA_binding_domain(100%),SH2_domain(100%) TRAM_LAG1_CLN8(100%)|HHH_3(100%),HHH_7(100%),HHH_9(100%),S1(100%),SH2(100%),SH2_2(100%),YqgF(100%) 1 7 0 199 391 ENST00000579671.5 ENST00000314616.11 downstream upstream duplicates(1) CGCTCACTCACCACAGCAGTGCCCAGATCCCCGACACAATGGAGTGAGCGAAGGAGACGAGCAGGTTGTGCCAGCGCCAG|GCTCAAGGATGTCCAATCAATGGATGAGCTGAAAGATGTCTACAACCATTTTCTTCTTTATTATGGCCGAGACATCCCTAAGATGCAGAACGCCGCCAAAGCTAGCCGCAAGAAGCTGAAGCGTGTCAGGGAAGAGGGAGATGAAGAAG___GTGA...ACGAGGCAGAAGATGAGGAGCAGAGGGGGCCTGAGCTCAAGCAAGCCTCTCGCCGAGACATGTACACCATCTGCCAGAGTGCTGGGCTAG___ATGGtCTGGCCAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek8 Other NEK Q86SG6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9748 NEK8::SUPT6H ENSG00000160602.14::ENSG00000109111.15 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 986 TRUE 1728 TRUE 684 NEK8 ENSG00000160602.14 protein_coding + + chr17:28725897-28743455:+ chr17:28728860:+ chr17:27052915-27070473:+ chr17:27055878:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28681256:+ chr17:26989216-27029697:+ chr17:27008274:+ chr17:28733962,chr17:28733962 chr17:28680124,chr17:28680121 NA NA chr17:27060980,chr17:27060980 chr17:27007142,chr17:27007139 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Protein_kinase_domain(5%)|HHH_domain(100%),Helix-hairpin-helix_motif_______________________(100%),Holliday-junction_resolvase-like_of_SPT6_(100%),S1_RNA_binding_domain(100%),SH2_domain(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%),TRAM_LAG1_CLN8(100%)|HHH_3(100%),HHH_7(100%),HHH_9(100%),S1(100%),SH2(100%),SH2_2(100%),YqgF(100%) 0 16 0 17 391 ENST00000268766.11 ENST00000314616.11 downstream upstream duplicates(3),mismatches(1) GGGGACGGAAGTGAAACTCTAAGAAATGAGATGGAGAAGTACGAGCGGATCCGAGTGGTGGGGAGAGGTGCCTTCGG|GCTCAAGGATGTCCAATCAATGGATGAGCTGAAAGATGTCTACAACCATTTTCTTCTTTATTATGGCCGAGACATCCCTAAGATGCAGAACGCCGCCAAAGCTAGCCGCAAGAAGCTGAAGCGTGTCAGGGAAGAGGGAGATGAAGAAG___GTGAAGGTGACGAGGCAGAAGATGAGGAGCAGAGGGGGCCTGAGCTCAAGCAAGCCTCTCG MEKYERIRVVGRGAFg|LKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKASRKKLKRVREEGDEEGEGDEAEDEEQRGPELKQAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase Nek8 Other NEK Q86SG6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9749 SLC25A42::NWD1 ENSG00000181035.14::ENSG00000188039.17 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A42 ENSG00000181035.14 protein_coding + + chr19:19063994-19113030:+ chr19:19096203:+ chr19:19174803-19223839:+ chr19:19207012:+ NWD1 ENSG00000188039.17 protein_coding + - chr19:16719847-16817963:+ chr19:16797962:- chr19:16830658-16928774:+ chr19:16908773:- chr19:19097813,chr19:19097814 chr19:16803523,chr19:16803523 NA NA chr19:19208622,chr19:19208623 chr19:16914334,chr19:16914334 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 1 3 1 35 5 ENST00000318596.8 unknown downstream downstream duplicates(1) GTCAGCGGCCCGCGCCTGTCGGGCTGAACTGAG___GACCGAGTCTCCTGCCATTCCGAGCAGGCCTGGTATGGGTAATGGTGTGAAGGAAGGCCCGGTGCGATTGCATGAGGATGCTGAGGCTGTCCTGTCCTCGTCCGTCTCATCAA|AGCCAAAAATCCCTAAAGAATCAGTGTCTGTTCCCGAGGTGGAGGTGAGGATGAAGGGTCCCAGATCTCCCCTCACCTGAATG...TGATCAGGTTGTTCTCAGTACCAAAAACAGCCGTCTCCACCATGTCTTCATGTTCCAGATCCATGGCCATGAATCGGCGAAAGCCCCTCGAGTCCGCCAAGAATATCCGCACCGATCTTCCAAAGCCTGAAACGGCAGGAACTGGGGTTACACCTCTCATGTCCAGAGGAGATTGAGG MGNGVKEGPVRLHEDAEAVLSSSVSS|kpkipkesvsvpevevrmkgprsplt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9760 TEFM::ADAP2 ENSG00000172171.11::ENSG00000184060.11 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TEFM ENSG00000172171.11 protein_coding - - chr17:30897336-30906238:- chr17:30906168:- chr17:29224354-29233256:- chr17:29233186:- ADAP2 ENSG00000184060.11 protein_coding + - chr17:30906344-30959322:+ chr17:30907379:- chr17:29233362-29286340:+ chr17:29234397:- chr17:30906029 chr17:30910779 NA NA chr17:29233047 chr17:29237797 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 0 3 0 114 14 ENST00000581216.6 unknown upstream downstream mismappers(1) TGGACCTACTGATTCAACTTGGAGATGAGCGGGTCTGTCCTCTTCACGGCGGGAG|GgTCAATTCCTTACGGTTGGCCAGGCGCAGTGGCCCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGTCGGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGACACCTGTCTCTACTAAAAATACAAAAATTAGCCGG...GGCGCTCGCCTGTAATCTCAGCTACTCGGGAGGCTGAGGCACGAGAATCACTTGAAATCGGGAGGCGGAGTTTGCAGTGAGTCCAGATCGCACCACTGCACTCC MSGSVLFTAG|gsipygwpgavahacnpstlggrvgrit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9763 ENSG00000267735::NFIX ENSG00000267735.1::ENSG00000008441.19 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267735 ENSG00000267735.1 lncRNA + + chr19:12880969-12884088:+ chr19:12881204:+ chr19:12991783-12994902:+ chr19:12992018:+ NFIX ENSG00000008441.19 protein_coding + - chr19:12995475-13098796:+ chr19:13098463:- chr19:13106289-13209610:+ chr19:13209277:- chr19:12881434 chr19:13098589 NA NA chr19:12992248 chr19:13209403 NA NA sense antisense unknown intron 3'UTR inversion/3'-3' low none none none 0 0 10 40 116 ENST00000592400.1 unknown downstream downstream mismatches(1) GGCTGGTGTTGCTCCGGTACAGCGGCTGCAGGCTTCGGCCCACGGCCCCCTCCGGGCTGTTGATGAGTGCCCTGCCGTCCCGCCAGCCTCCGGAGCTCTCGTCCAGATACTTGTACTGCAGCCCTCTCTGCGCCGCCTCCCCGGACCCTCTAAGAGCTGGCAGCTTGTAGACCACGAACCTGGAGGTCGGAGAATGCACAGAAATAGGAGAGAGGGAcaAGAAGGCACCCC...|...GTACTATATATAGAGATtCTCGTATATACTGCGTTTCTTAGCCTAAGAAGAAACTTGTTTGACGGGACGGGCGGCCTTTGCGGTCCGCGATGCTGGTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9790 KCNMA1::DLG5 ENSG00000156113.25::ENSG00000151208.17 A204 SRR8615638 SRR8639132 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE FALSE NA TRUE 1734 TRUE 685 KCNMA1 ENSG00000156113.25 protein_coding - - chr10:76869601-77638369:- chr10:77586317:- chr10:78629359-79398127:- chr10:79346075:- DLG5 ENSG00000151208.17 protein_coding - - chr10:77790791-77926755:- chr10:77869197:- chr10:79550549-79686513:- chr10:79628955:- chr10:77509387,chr10:77509389,chr10:77509389 chr10:77902886,chr10:77902885,chr10:77902978 NA NA chr10:79269145,chr10:79269147,chr10:79269147 chr10:79662644,chr10:79662643,chr10:79662736 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |Guanylate_kinase(100%),PDZ_domain(100%),Takusan(100%),Unstructured_region_between_two_PDZ_domains_on_Dlg5(100%) |Guanylate_kin(100%),PDZ(100%),PDZ_6(100%),Takusan(100%),dbPDZ_assoc(100%) 1 0 2 8 103 ENST00000638506.1 ENST00000372391.7 upstream downstream none AGGCGCTCA___AAATTACTACCTACTTGAAACTGGACTTGTTTTCTGCGCTCCTATGAAACTGAACAGTGGAGGGTTGCTCGTGAAGGATCTGGGACATGTTTCATATGGAGCACAAGAAAAGGACGTCGAACATGCAACGGTCTGCATCCAG|GTTCTACCTACAGCGTCCTGTCCACCATGCCCTCAGACTCAGAAAGCAGCAGCTCCCTCAGCAGTGTGG___GCACTACCGGGAAGGCGCCGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma OVARY,BREAST no_match 79397023|79397023|79397023,79163620 FALSE|FALSE|FALSE,FALSE 79584234|79556352|79579776,79552301 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9791 KCNMA1::DLG5 ENSG00000156113.25::ENSG00000151208.17 A204 SRR8615638 SRR8639132 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE TRUE 990 TRUE 1734 TRUE 685 KCNMA1 ENSG00000156113.25 protein_coding - - chr10:76869601-77638369:- chr10:77637265:- chr10:78629359-79398127:- chr10:79397023:- DLG5 ENSG00000151208.17 protein_coding - - chr10:77790791-77926755:- chr10:77869197:- chr10:79550549-79686513:- chr10:79628955:- chr10:77509387,chr10:77509389,chr10:77509389 chr10:77902886,chr10:77902885,chr10:77902978 NA NA chr10:79269145,chr10:79269147,chr10:79269147 chr10:79662644,chr10:79662643,chr10:79662736 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Guanylate_kinase(100%),PDZ_domain(100%),Takusan(100%),Unstructured_region_between_two_PDZ_domains_on_Dlg5(100%) |Guanylate_kin(100%),PDZ(100%),PDZ_6(100%),Takusan(100%),dbPDZ_assoc(100%) 2 3 2 1068 103 ENST00000638991.1 ENST00000372391.7 upstream downstream duplicates(1),mismatches(2) AGGCAGCAGTCTTAGAATGAGTAGCAATATCCACGCGAACCATCTCAGCCTAGACGCGTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTTCTTCTTCCTCCTCCTCTTCCTCC...GTGCGACAGCCGGGGCCAACGCATGTGGTGGGCTTTCCTGGCCTCCTCCATGGTGACTTTCTTCGGGGGCCTCTTCATCATCTTGCTCTGGCGGACGCTCAAGTACCTGTGGACCGTGTGCTGCCACTGCGGGGGCAAGACGAAG|GTTCTACCTACAGCGTCCTGTCCACCATGCCCTCAGACTCAGAAAGCAGCAGCTCCCTCAGCAGTGTGG___GCACTACCGGGAAGGCGCCGTC...CCTCTCCATTCAGCTGCGGCTGATGACCCGGGAGAGAAACGAGCTCCGCAAGCGCCTGGCCTTTGCTACGCATGGCACGGCCTTTGACAAGAG___GCCCTACC...GTCGGACCTGCAGAGCCTGCAGAACCAGCACACCAACGCCTTGAAGAGGTGTGAGGAGGTGGCCAAGGAGACTGACTTCTACCA___CACACTCCACAGCCGGCTCCTGAGTGACCAGACTCGGCTGAAGGATGACGTGGACATGCTGAGGCGGGAGAATGGGCAtCTGCTGCGGGAGCGAAtCtaGCTGCAGtAGTCATGGGAGGACATGAAGCGGCTCCACGAGGAcGcCCAGAAGGA CDSRGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGGKTK|vlptascppcpqtqkaaapsavwalpgrrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma OVARY,BREAST no_match 79397023|79397023|79397023,79163620 TRUE|TRUE|TRUE,FALSE 79584234|79556352|79579776,79552301 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9792 KCNMA1::DLG5 ENSG00000156113.25::ENSG00000151208.17 A204 SRR8615638 SRR8639132 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE FALSE NA TRUE 1734 TRUE 685 KCNMA1 ENSG00000156113.25 protein_coding - - chr10:76869601-77638369:- chr10:77637265:- chr10:78629359-79398127:- chr10:79397023:- DLG5 ENSG00000151208.17 protein_coding - - chr10:77790791-77926755:- chr10:77856892:- chr10:79550549-79686513:- chr10:79616650:- chr10:77509387,chr10:77509389,chr10:77509389 chr10:77902886,chr10:77902885,chr10:77902978 NA NA chr10:79269145,chr10:79269147,chr10:79269147 chr10:79662644,chr10:79662643,chr10:79662736 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Guanylate_kinase(100%),PDZ_domain(100%),Takusan(100%),Unstructured_region_between_two_PDZ_domains_on_Dlg5(100%) |Guanylate_kin(100%),PDZ(100%),PDZ_6(100%),Takusan(100%),dbPDZ_assoc(100%) 0 1 1 1068 110 ENST00000638991.1 ENST00000372391.7 upstream downstream none GTGGACCGTGTGCTGCCACTGCGGGGGCAAGACGAAG|GCACTACCGGGAAGGCGCCGTCCCCACCACCCCTCCTCACTGACCAGCAAGTGAATGAGAAGGTGGAGAcCCTCTCCATTCAGCTGCGGCTGATGACCCGGGAGAGAAACGAGCTCCGCAAGCGCCTGGCCTTTGCTACGCATGGCACGGCCTTTGACAAGAG___GCTGAATCCTGACTATGAGAG WTVCCHCGGKTK|alpgrrrphhpssltsk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma OVARY,BREAST no_match 79397023|79397023|79397023,79163620 TRUE|TRUE|TRUE,FALSE 79584234|79556352|79579776,79552301 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9808 FUT8::GALNT16 ENSG00000033170.17::ENSG00000100626.17 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 992 TRUE 1738 TRUE 686 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65561766:+ chr14:65877310-66210839:+ chr14:66028484:+ GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69341681:+ chr14:69725994-69823750:+ chr14:69808398:+ chr14:65562987,chr14:65562985 chr14:69340814,chr14:69340812 NA NA chr14:66029705,chr14:66029703 chr14:69807531,chr14:69807529 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Ricin-type_beta-trefoil_lectin_domain(100%) FUT8_N_cat(0%)|Ricin_B_lectin(100%) 59 67 55 504 158 ENST00000360689.9 ENST00000337827.8 downstream upstream duplicates(12),mismatches(8) TCTTTGAGCTCCAGGACTCCAGGGAAGTGAGTTGAAAATCTGAAAATGCGGCCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACCTTGCTGTTTTATATAGGTGGTCACTTGGTACGAGATAATGACCATCCTGATCACTCTAGCCGAGAACTGTCCAAGATTCTGGCAAAGCTTGAACGCTTAAAACAgCAGAATGAAGACTTGAGGCGAATGGCCGAATCTCTCCG|TGTGGCTACGCGGATAGAGCAGAGGAAGAAGATGAACTGCAAGTCCTTCCGCTGGTACCTGGAGAACGTCTACCCAGAGCTCAC___GGTCCCCGTGAAGGAAGCACTCCCCGGCATCATTAAGCAGGGGGTGAACTGCTTAGAATCTCAGGGCCAGAACACAGCTGGTGACTTCCTGCTTGGAATGGGG MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDLRRMAESLr|VATRIEQRKKMNCKSFRWYLENVYPELTVPVKEALPGIIKQGVNCLESQGQNTAGDFLLGM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-625 chr14:65471102-65471186:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9809 FUT8::GALNT16 ENSG00000033170.17::ENSG00000100626.17 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1738 TRUE 686 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65561766:+ chr14:65877310-66210839:+ chr14:66028484:+ GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69347040:+ chr14:69725994-69823750:+ chr14:69813757:+ chr14:65562987,chr14:65562985 chr14:69340814,chr14:69340812 NA NA chr14:66029705,chr14:66029703 chr14:69807531,chr14:69807529 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Ricin-type_beta-trefoil_lectin_domain(100%) FUT8_N_cat(0%)|Ricin_B_lectin(100%) 1 0 28 504 215 ENST00000360689.9 ENST00000337827.8 downstream upstream duplicates(3),mismatches(3) ACAGAGTTACAATGTTTTCAATTCTTTGAGCTCCAGGACTCCAGGGAAGTGAGTTGAAAATCTGAAAATGCGGCCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACCTTGCTGTTTTATATAGGTGGTCACTTGGTACGAGATAATGACCATCCTGATCACTCTAGCCGAGAACTGTCCAAGATTCTGGCAAAGCTTGAACGCTTAAAACAgCAGAATGAAGACTTGAGGCGAATGGCCGAATCTCTCCG|GGTCCCCGTGAAGGAAGCACTCCCCGGCATCATTAAGCAGGGGGTGAACTGCTTAGAATCTCAGGGCCAGAACACAGCTGGTGACTTCCTGCTTGGAATGGGGATCTGCAGAGGGTCTGCCAAGAACCCGCAGCCCGCCCAG___GCATGGCTGTTCAGTGACCACCTCATCCAGCAGCAGGGGAAGTGCCTGGCTGCCACCTCCACCTTAATGTCCTCCCCTGGATCCCCAG MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDLRRMAESLr|VPVKEALPGIIKQGVNCLESQGQNTAGDFLLGMGICRGSAKNPQPAQAWLFSDHLIQQQGKCLAATSTLMSSPGSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-625 chr14:65471102-65471186:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9811 C10orf95-AS1::SUFU ENSG00000269609.6::ENSG00000107882.12 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 993 TRUE 1739 TRUE 687 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102450330:+ chr10:104209573-104220863:+ chr10:104210087:+ SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102592582:+ chr10:104263729-104393292:+ chr10:104352339:+ chr10:102451225 chr10:102566972 NA NA chr10:104210982 chr10:104326729 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through high none |Suppressor_of_Fused_Gli/Ci_N_terminal_binding_domain(100%),Suppressor_of_fused_protein_(SUFU)(50%) |SUFU(1%),SUFU_C(100%) 15 27 18 158 156 ENST00000657934.2 ENST00000369902.8 downstream upstream low_entropy(4),mismatches(4) GGCAAGCTCC...TAGGAGAAGGTGGGGAGGAGGAAGGAGGGAGGTCCAGGCCCTTCTTCCATCCCACGTCCTCCACTTCCCAAGGTGCAAGAAGAAAAGAGGTACAGAACACCCAGAGGTGCCCTCGATTCCGTCTTGCACTTGCCCTTCTCCCACCGTCCAGCAATAAAGCGAGAGAAACAAGTGCAGGAAACTGGCCGGCAGTCATGGGAGAAGCCAAAAAGACAG|AGAACACCTTCTGCAGTGGGGACCATGTGTCCTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGAGGACCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTTACCTTCCTCCAG___ATCGTTGGTGTCTGCACTGAAGAGCTACACTCAGCCCAGCAGTGGAACGGGCAGGGCATCCTGGAGCTGCTGCGGACAGTGCCTAT___TGCTGGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site 9812 C10orf95-AS1::SUFU ENSG00000269609.6::ENSG00000107882.12 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 994 TRUE 1739 TRUE 687 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102451018:+ chr10:104209573-104220863:+ chr10:104210775:+ SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102592582:+ chr10:104263729-104393292:+ chr10:104352339:+ chr10:102451225 chr10:102566972 NA NA chr10:104210982 chr10:104326729 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none |Suppressor_of_Fused_Gli/Ci_N_terminal_binding_domain(100%),Suppressor_of_fused_protein_(SUFU)(50%) |SUFU(1%),SUFU_C(100%) 2 6 20 25 156 ENST00000596045.1 ENST00000369902.8 downstream upstream mismatches(4) GGTGGTATTCCCGTGGGGCCGCCCAaTCGCCCGCATGCAGGCTCCCGGGCCGGCTGCGGAAGCTGTGGGCCTGGACTGGGGGTAGCAGCAGAGGGGCGGCCAG|AGAACACCTTCTGCAGTGGGGACCATGTGTCCTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGAGGACCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTTACCTTCCTCCAG___ATCGTTGGTGTCTGCACTGAAGAGCTACACTCAGCCCAGCAGTGGAACGGGCAGGGCATCCTGGAGCTGCTGCGGACAGTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site 9818 EFHD1::UBR3 ENSG00000115468.13::ENSG00000144357.18 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 997 FALSE NA FALSE NA EFHD1 ENSG00000115468.13 protein_coding + + chr2:232606057-232682776:+ chr2:232672443:+ chr2:233470767-233547486:+ chr2:233537153:+ UBR3 ENSG00000144357.18 protein_coding + + chr2:169827454-170084131:+ chr2:170061079:+ chr2:170683964-170940641:+ chr2:170917589:+ chr2:232678797,chr2:232678793 chr2:170057925,chr2:170057918 NA NA chr2:233543507,chr2:233543503 chr2:170914435,chr2:170914428 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none EF-hand_domain_pair(100%)|Proteolysis_6_C-terminal(58%) EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%)|PRT6_C(28%) 7 7 3 107 66 ENST00000409613.5 ENST00000272793.11 downstream upstream duplicates(2) CCCAGACCCACCTGGGCCTGAAGAGCATGATCAAGGAGGTGGATGAGGACTTCGATGGCAAGCTCAGCTTCCGGGAG___TTCCTGCTCATTTTCCACAAGGCCGCGGCAGGGGAGCTGCAGGAGGACAGTGGGCTGATGGCGCTGGCAAAGCTTTCTGAGATCGATGTGGCCCTGGAGGGTGTCAAAGGTGCCAAGAACTTCTTTGAAGCCAAG|AGTACATGTGATGCAGAAAAGTCTTACGAAGTATTACTGAGCTTTGTGATAAGTGAACTgTTTAAAGGAAAGTTATACCATGAAGAAGGAACTCAGGAATGTGCAATG___GTTAACCCTATTGCTTGGTCTCCTGAATCCATGGAAAAATGCTTACAGGACTTCTGCTTACCTTTTCTCAGAATCACCAGCCTTCTTCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGCCAG___GAAGAAGAAGAATTTTCAGTTCTTGCCAGCTGCCTGGGACTTCTGCCAACGTTTTAC QTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAK|STCDAEKSYEVLLSFVISELFKGKLYHEEGTQECAMVNPIAWSPESMEKCLQDFCLPFLRITSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9819 SERGEF::NAV2 ENSG00000129158.11::ENSG00000166833.23 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SERGEF ENSG00000129158.11 protein_coding - - chr11:17788048-18013047:- chr11:17959470:- chr11:17809595-18034594:- chr11:17981017:- NAV2 ENSG00000166833.23 protein_coding + - chr11:19350724-20121601:+ chr11:19594510:- chr11:19372271-20143147:+ chr11:19616056:- chr11:17959362,chr11:17959364 chr11:19595009,chr11:19595008 NA NA chr11:17980909,chr11:17980911 chr11:19616555,chr11:19616554 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Regulator_of_chromosome_condensation_(RCC1)_repeat(78%)| RCC1(15%),RCC1_2(100%)| 8 1 6 124 9 ENST00000265965.10 unknown upstream downstream low_entropy(1),mismatches(3) CCTGGTTGCTCAGACAG___AAACTGGCAAGATGTTTACCTGGGGCCGAGCAGACTATGGTCAGCTAGGGAGGAAGTTGGAGACTTATGAAGGCTGGAAACTAGAAAAGCAAGATTCATTTCTCCCCTGTTCAAGACCACCGAACAGCATGCCTTCaTCTCCGCATTGCTTAACTGGAGCAACTGAG|CAGCAGCAGCAGCAGCCTGCTTCTATGTGCCCTGGATACAGAAGACACAGGAGAAATCCCTTCTTTAAAAAAAAAAAAAAAAGTCCCCGAAGTAGAAACCAGCCAGCTACCATCAAACCTTGCAGCACAGGAGAAAGGTAGGATGCGGTTGAAAAGAGACACAATTTTCAAAGACTTAGTGAAACTTACAGAAACTTAATGACACAGACAGATAGAAATCTGTTCTAGTGCTTGAGCCTCAACTCCTCAACCTGGTAAATGGGC LVAQTETGKMFTWGRADYGQLGRKLETYEGWKLEKQDSFLPCSRPPNSMPSSPHCLTGATE|qqqqqpasmcpgyrrhrrnpffkkkkksprsrnqpatikpcstger* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9822 ENSG00000224481::LINC01731 ENSG00000224481.4::ENSG00000234283.1 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000224481 ENSG00000224481.4 lncRNA + + chr1:148295895-148344638:+ chr1:148303555:+ chr1:147768002-147816766:+ chr1:147775662:+ LINC01731 ENSG00000234283.1 lncRNA - - chr1:148271884-148280749:- chr1:148273083:- chr1:147744014-147752855:- chr1:147745213:- NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site inversion high none none none 2 5 4 30 25 unknown ENST00000428035.1 downstream downstream none GCAAGATGCGCCTCTCAGGTTTTCCGAGGCTTTGGAGCCTGCACAATTGTTCTACAAAAGGCAGTAGCTCCGCCGAACGTTGGATCGTCCCTTGGTCTGGTGATACCAGAACGAGAGTTGACTGTGTGTCTCAGTCGGTTGGTATGCTTGCTTCCAAGCCTGGAG|AAGCATGCCATACCTAAGACCTACTACCCTGAGAAGCAGTGAAGTGCTCCTGGGGCCCACCAAGGCCACACAAGTCAAGGAGTGGATGGCCTTGCTCCAGCTACTGCTCAGATCACCTTTGCAAGATGACATTGTGTTGGGAGATGGTCATCAGAGCCAGGGCCATGGAAGATGCTGTCAGGAG___GCACGAGGAAAGGCTATGGGAGCACAAAGCAAGAAAGTGGCCTTCTGCAAGCCAGGAAGAGAGGCCTCCCCAGAAACCAACTCTGTGAGCTCATCGATCTTTGACTTTTGGCCTCCAGAACATTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9823 KDM3B::ITFG2-AS1 ENSG00000120733.15::ENSG00000256150.2 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM3B ENSG00000120733.15 protein_coding + + chr5:138352685-138437028:+ chr5:138428086:+ chr5:137688374-137772717:+ chr5:137763775:+ ITFG2-AS1 ENSG00000256150.2 lncRNA - + chr12:2695765-2812902:- chr12:2769684:+ chr12:2804931-2922068:- chr12:2878850:+ chr5:138428306,chr5:138428304 chr12:2769483,chr12:2769478 NA NA chr5:137763995,chr5:137763993 chr12:2878649,chr12:2878644 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 2 4 4 394 16 ENST00000314358.10 unknown downstream upstream mismatches(2) CAAACGAGATGGCAGGCTCAATCTGGCCTCTAGGCTACCTAGCTACTTTGTAAGGCCTGATCTGGGCCCCAAGATGTACAACGCCTATG___GGTTGATAACAGCAGAAGATAGAAGAGTTGGTACAACAAATCTTCACTTAGATGTGTCTGATGCTGTTAATGTGATGGTGTATGTTGGGATTCCCATCGGGGAGGGTGCTCATGATGAAG|ATATAATGGAACATTTCACCTGTTCACCTCTTGATAGACATTTGGTTTACTTCCAGTTTGGGCTACTACAAATAAAGCAGCTATAAAAAAAAAAAAAAAAAGACCACCACTGCATCTTCAGCTTTAACAACAGTGACCACACCACTGAGGAAGTGCTGAACAGACACCCTCACCGCTTCTCTAGCCCCACTGGGTTTAGAGGTCAAGGATGGGACAAGTATAGAGCCAGGCTCAGAGTGGGGCAAAAAGAGGACAAAGGAGCAGGACTGTCAGTGCAGCCATGAGTTTGTAATTAACAAGAGTGC KRDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDE|dimehftcspldrhlvyfqfgllqikql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9824 KDM3B::ENSG00000255669 ENSG00000120733.15::ENSG00000255669.2 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM3B ENSG00000120733.15 protein_coding + + chr5:138352685-138437028:+ chr5:138428086:+ chr5:137688374-137772717:+ chr5:137763775:+ ENSG00000255669 ENSG00000255669.2 transcribed_unitary_pseudogene - + chr12:2761200-2775658:- chr12:2769684:+ chr12:2870366-2884824:- chr12:2878850:+ chr5:138428306,chr5:138428304 chr12:2769483,chr12:2769478 NA NA chr5:137763995,chr5:137763993 chr12:2878649,chr12:2878644 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 2 4 4 394 16 ENST00000314358.10 unknown downstream upstream mismatches(2) CAAACGAGATGGCAGGCTCAATCTGGCCTCTAGGCTACCTAGCTACTTTGTAAGGCCTGATCTGGGCCCCAAGATGTACAACGCCTATG___GGTTGATAACAGCAGAAGATAGAAGAGTTGGTACAACAAATCTTCACTTAGATGTGTCTGATGCTGTTAATGTGATGGTGTATGTTGGGATTCCCATCGGGGAGGGTGCTCATGATGAAG|ATATAATGGAACATTTCACCTGTTCACCTCTTGATAGACATTTGGTTTACTTCCAGTTTGGGCTACTACAAATAAAGCAGCTATAAAAAAAAAAAAAAAAAGACCACCACTGCATCTTCAGCTTTAACAACAGTGACCACACCACTGAGGAAGTGCTGAACAGACACCCTCACCGCTTCTCTAGCCCCACTGGGTTTAGAGGTCAAGGATGGGACAAGTATAGAGCCAGGCTCAGAGTGGGGCAAAAAGAGGACAAAGGAGCAGGACTGTCAGTGCAGCCATGAGTTTGTAATTAACAAGAGTGC KRDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDE|dimehftcspldrhlvyfqfgllqikql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9825 GALNT16::SIPA1L1-AS1 ENSG00000100626.17::ENSG00000259146.4 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1741 TRUE 688 GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69333600:+ chr14:69725994-69823750:+ chr14:69800317:+ SIPA1L1-AS1 ENSG00000259146.4 lncRNA - - chr14:71292729-71321882:- chr14:71311376:- chr14:71759446-71788599:- chr14:71778093:- chr14:69337928 chr14:71318308 NA NA chr14:69804645 chr14:71785025 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Glycosyl_transferase_family_2(100%)| Glycos_transf_2(100%)| 2 2 5 21 7 ENST00000337827.8 ENST00000554634.1 downstream downstream mismatches(1) CGCGTGGTGAGTCCCATCATTGATGTCATCAGTCTGGATAATTTTGCCTACCTTGCAGCATCTGCTGACCTTCGTGGAG___GGTTtGACTGGAGCCTGCATTTCAAGTGGGAGCAGATCCCTCTTGAGCAGAAGATGACCCGGACAGACCCCACCAGGCCCATAAG___GACGCCTGTCATAGCTGGAGGAATCTTCGTGATCGACAAGTCCTGGTTTAACCACTTGGGAAAGTATGATGCCCAGATGGACATCTGGGGGGGAGAGAATTTTG|AAATGAAAAGAGGCTTGCTCATGACTTGGAAGCGGTGGGCTGAGGCCTCCCAAGACCATCTGGCTTGTTCCATTGCCAGCCAGAGTGGAGGCGACATTCACACGAACCCAGGAGCTGCAGGGGgGCtTGAGCTACAGCTGCCTTGTGGCATCCAAGGAGTGCGCA___ACTAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTTACTTCAGCCTCCGCCTCCCG RVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIPLEQKMTRTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENF|emkrgllmtwkrwaeasqdhlacsiasqsggdihtnpgaagglelqlpcgiqgvrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9826 GALNT16::SIPA1L1-AS1 ENSG00000100626.17::ENSG00000259146.4 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1741 TRUE 688 GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69333600:+ chr14:69725994-69823750:+ chr14:69800317:+ SIPA1L1-AS1 ENSG00000259146.4 lncRNA - - chr14:71292729-71321882:- chr14:71310679:- chr14:71759446-71788599:- chr14:71777396:- chr14:69337928 chr14:71318308 NA NA chr14:69804645 chr14:71785025 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Glycosyl_transferase_family_2(100%)| Glycos_transf_2(100%)| 1 1 3 21 40 ENST00000337827.8 ENST00000554634.1 downstream downstream mismatches(1) GTTtGACTGGAGCCTGCATTTCAAGTGGGAGCAGATCCCTCTTGAGCAGAAGATGACCCGGACAGACCCCACCAGGCCCATAAG___GACGCCTGTCATAGCTGGAGGAATCTTCGTGATCGACAAGTCCTGGTTTAACCACTTGGGAAAGTATGATGCCCAGATGGACATCTGGGGGGGAGAGAATTTTG|ACTAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTTACTTCAGCCTCCGCCTCCCGtTTTCAAGTGAATTCTCCAGCCTCAACTTCACAAGTAGCTGGGATTACAGGTGCGCACCACCCACCTGGCTAATTG FDWSLHFKWEQIPLEQKMTRTDPTRPIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENF|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9827 GALNT16::SIPA1L1-AS1 ENSG00000100626.17::ENSG00000259146.4 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1741 TRUE 688 GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69333600:+ chr14:69725994-69823750:+ chr14:69800317:+ SIPA1L1-AS1 ENSG00000259146.4 lncRNA - - chr14:71292729-71321882:- chr14:71295456:- chr14:71759446-71788599:- chr14:71762173:- chr14:69337928 chr14:71318308 NA NA chr14:69804645 chr14:71785025 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Glycosyl_transferase_family_2(100%)| Glycos_transf_2(100%)| 0 2 2 21 45 ENST00000337827.8 ENST00000555771.2 downstream downstream none GTTtGACTGGAGCCTGCATTTCAAGTGGGAGCAGATCCCTCTTGAGCAGAAGATGACCCGGACAGACCCCACCAGGCCCATAAG___GACGCCTGTCATAGCTG...ATCGACAAGTCCTGGTTTAACCACTTGGGAAAGTATGATGCCCAGATGGACATCTGGGGGGGAGAGAATTTTG|GGCATTCAAGCAGCCCTGAGGAGAGGTCCACATGGTGAGCCACTGAGGGCCTTGCCAAGAGCCAGCACCAACGGTCCAGGTTTGGAGTGTACCACCTTGGAAGTGAATCTTCCAGTCCAGTCAAGCCTTCAGATGACTTCAGAACCGTCC IDKSWFNHLGKYDAQMDIWGGENF|ghssspeerstw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9830 FHL3::ENSG00000223944 ENSG00000183386.10::ENSG00000223944.3 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FHL3 ENSG00000183386.10 protein_coding - - chr1:37996770-38005606:- chr1:37998974:- chr1:38462442-38471278:- chr1:38464646:- ENSG00000223944 ENSG00000223944.3 lncRNA - - chr1:37154761-37325100:- chr1:37156993:- chr1:37620362-37790701:- chr1:37622594:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none LIM_domain(29%)| LIM(17%)| 1 0 4 141 0 ENST00000373016.4 ENST00000657513.1 upstream downstream none CTGAGTGCCAGCAGCTTATCGGGCATGACTCGAGG___GAGCTGTTCTATGAAGACCGCCATTTCCACGAGGGCTGCTTCCGCTGCTGCCGCTGCCAGCGCTCACTAGCCGATGAACCCTTCACCTGCCAGGACAGTGAGCTGCTCTGCAATGACTGCTACTGCAGTGCGTTTTCCTCGCAGTGCTCCGCTTGTGGGGAGACTGTCATGCCTG|GCCTCTGAAGACATACCCATTCCTTTTCTTCTGAGCCCGCAGAAGACAACCCTGCCTAGCTTCTTTGCAGCTACGTGGAGACATGTGACTAGTTTGGCCAATGGGATGTGAGAAGAGATGATGAAACTCGGAGGAGAACTTGTGAGATCGCCG...___AATATAAATTTGAGCAGGACATGGACCTTTTCAATCTTGC ECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSQCSACGETVMP|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9834 FHIT::PTPRG ENSG00000189283.11::ENSG00000144724.20 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:61200617:- chr3:59733003-61237133:- chr3:61186291:- PTPRG ENSG00000144724.20 protein_coding + - chr3:61561569-62297609:+ chr3:61762051:- chr3:61547243-62283284:+ chr3:61747725:- chr3:61057214,chr3:61057216,chr3:61057229,chr3:61057231 chr3:61779552,chr3:61779554,chr3:61779564,chr3:61779564 NA NA chr3:61042886,chr3:61042888,chr3:61042901,chr3:61042903 chr3:61765226,chr3:61765228,chr3:61765238,chr3:61765238 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 0 1 3 58 1 ENST00000492590.6 unknown upstream downstream none CTCAGGCGGCCACCCAGTGGGCACACTCCCAGGCGGCGCTCCGGCCCCGCGCTCCCTCCCTCTGCCTTTCATTCCCAGCTGTCAACATCCTGGAAG___CTTTGAAGCTCAGGAAAGAAGAGAAATCCACTGAGAACAGTCTGTAAAG|GTGCTAGTCCAACAGCCAAGAAGAGCTTCATATTTCATTTTCCTGCTAAAATCTCTCAATGACCAATCAATACTCAGTGTACTAATGGCATGCACACTCTGCTAAAAAGAAGAACATCAGCCTAACATTTGGAACTAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 9848 C10orf95::SUFU ENSG00000120055.7::ENSG00000107882.12 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C10orf95 ENSG00000120055.7 protein_coding - + chr10:102449837-102451543:- chr10:102451028:+ chr10:104209594-104211300:- chr10:104210785:+ SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102592582:+ chr10:104263729-104393292:+ chr10:104352339:+ chr10:102451225 chr10:102566972 NA NA chr10:104210982 chr10:104326729 NA NA antisense sense unknown CDS CDS/splice-site deletion/read-through/3'-3' medium none |Suppressor_of_Fused_Gli/Ci_N_terminal_binding_domain(100%),Suppressor_of_fused_protein_(SUFU)(50%) |SUFU(1%),SUFU_C(100%) 1 3 15 25 156 unknown ENST00000369902.8 downstream upstream none CCCGTGGGGCCGCCCAaTCGCCCGCATGCAGGCTCCCGGGCCGGCTGCGGAAGCTGTGGGCCTGGACTGGGGGTAGCAGCAGAGGGGCGGCCAGGTAGGTGCAG|AGAACACCTTCTGCAGTGGGGACCATGTGTCCTGGCACAGCCCTTTGGATAACAGTGAGTCAAGAATTCAGCACATGCTGCTGACAGAGGACCCACAGATGCAGCCCGTGCAGACACCCTTTGGGGTAGTTACCTTCCTCCAG___ATCGTTGGTGTCTGCACTGAAGAGCTACACTCAGCCCAGCAGTGGAACGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site 9849 FLVCR2::TTLL5 ENSG00000119686.10::ENSG00000119685.20 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1745 TRUE 689 FLVCR2 ENSG00000119686.10 protein_coding + + chr14:75578620-75663214:+ chr14:75579641:+ chr14:76044963-76129557:+ chr14:76045984:+ TTLL5 ENSG00000119685.20 protein_coding + + chr14:75633625-75955079:+ chr14:75820007:+ chr14:76099968-76421422:+ chr14:76286350:+ chr14:75583144,chr14:75583142 chr14:75787772,chr14:75787767 NA NA chr14:76049487,chr14:76049485 chr14:76254115,chr14:76254110 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Major_Facilitator_Superfamily(36%)| MFS_1(0%)| 7 6 2 61 244 ENST00000238667.9 ENST00000298832.14 downstream upstream mismappers(1),mismatches(1) CGGCCTGCGCACCATTGCTCTCACTGGCTCGGCTCTCAACTGCCTGGGGGCCTGGGTGAAGCTGGGCAGCCTGAAGCCGCATCTCTTTCCGGTCACCGTaGTGGGCCAGCTCATCTGCTCTGTGGCCCAGGTTTTCATCCTGGGCATGCCCTCCCGCATCGCTTCCGTCTGGTTCGGGGCTAATGAGGTTTCAACAGCCTGCTCgGTGGCTGTCTTTGGCAATCAG|GTAACAAACCTGAATTTGGCAACTGGCATCATAAACAGAAGCAGTGCTTCAGCTCCCCCAACCCTCCGACCCATCATCAGTCCTAGTGGCCCGACATGGTCTACACAGTCAGACCCCCAAGCTCCCGAGAATCACTCC GLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQ|VTNLNLATGIINRSSASAPPTLRPIISPSGPTWSTQSDPQAPENH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9850 FLVCR2::TTLL5 ENSG00000119686.10::ENSG00000119685.20 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1745 TRUE 689 FLVCR2 ENSG00000119686.10 protein_coding + + chr14:75578620-75663214:+ chr14:75579641:+ chr14:76044963-76129557:+ chr14:76045984:+ TTLL5 ENSG00000119685.20 protein_coding + + chr14:75633625-75955079:+ chr14:75792916:+ chr14:76099968-76421422:+ chr14:76259259:+ chr14:75583144,chr14:75583142 chr14:75787772,chr14:75787767 NA NA chr14:76049487,chr14:76049485 chr14:76254115,chr14:76254110 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Major_Facilitator_Superfamily(36%)| MFS_1(0%)| 1 0 2 61 140 ENST00000238667.9 ENST00000298832.14 downstream upstream duplicates(1) GCTGGGCAGCCTGAAGCCGCATCTCTTTCCGGTCACCGTaGTGGGCCAGCTCATCTGCTCTGTGGCCCAGGTTTTCATCCTGGGCATGCCCTCCCGCATCGCTTCCGTCTGGTTCGGGGCTAATGAGGTTTCAACAGCCTGCTCgGTGGCTGTCTTTGGCAATCAG|GATCGTGCTATCTAAACAAGCATC LGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQ|drai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9851 FLVCR2::TTLL5 ENSG00000119686.10::ENSG00000119685.20 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1745 TRUE 689 FLVCR2 ENSG00000119686.10 protein_coding + + chr14:75578620-75663214:+ chr14:75579641:+ chr14:76044963-76129557:+ chr14:76045984:+ TTLL5 ENSG00000119685.20 protein_coding + + chr14:75633625-75955079:+ chr14:75792913:+ chr14:76099968-76421422:+ chr14:76259256:+ chr14:75583144,chr14:75583142 chr14:75787772,chr14:75787767 NA NA chr14:76049487,chr14:76049485 chr14:76254115,chr14:76254110 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Major_Facilitator_Superfamily(36%)| MFS_1(0%)| 1 0 2 61 140 ENST00000238667.9 ENST00000557636.5 downstream upstream duplicates(1) TGGGCAGCCTGAAGCCGCATCTCTTTCCGGTCACCGTaGTGGGCCAGCTCATCTGCTCTGTGGCCCAGGTTTTCATCCTGGGCATGCCCTCCCGCATCGCTTCCGTCTGGTTCGGGGCTAATGAGGTTTCAACAGCCTGCTCgGTGGCTGTCTTTGGCAATCAG|CAGGATCGTGCTATCTAAACAAGCATCATTCAGG GSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQ|qdrai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9886 SMAGP::TFCP2 ENSG00000170545.17::ENSG00000135457.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 999 TRUE 1749 TRUE 690 SMAGP ENSG00000170545.17 protein_coding - - chr12:51244558-51270415:- chr12:51269245:- chr12:51638342-51664199:- chr12:51663029:- TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51099779:- chr12:51487439-51566918:- chr12:51493562:- chr12:51261996,chr12:51261998,chr12:51262068,chr12:51262044 chr12:51100450,chr12:51100449,chr12:51100645,chr12:51100621 NA NA chr12:51655780,chr12:51655782,chr12:51655852,chr12:51655828 chr12:51494233,chr12:51494232,chr12:51494428,chr12:51494404 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 174 264 137 952 639 ENST00000603798.6 ENST00000257915.10 upstream downstream duplicates(54),inconsistently_clipped(3),mismappers(1),mismatches(29),multimappers(3) AAAAGGACGCGCGGAGCGGCGCCGGCCCTTCACCAGCAGCCCGTCCGACTGGAAAG___ATCTGCCTCTTCTCCAAGAAACTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGAG|GATGGTGCGTCCAAGGTTAACCATTTATGTTTGTCAGGAATCACTGCAGTTGAGGGAGCAGCAACAACAGCAGCAGCAACAGCAGCAGAAGCATGAGGATGGAGACTCAAATGGTACTTTCTTCG___TTTACCATGCTATCTATCTAGAAGAACTAACAGCTGTTGAATTGACAGAAAAAATTGCTCAGCTTTTCAGCATTTCCCCTTGCCAGATCAGCCAGATTTACAAGCAGGGGCCAACAGGAATTCATGTGCTCATCAGTGATGAG___ATGATACAGAACTTTCAG MTSLLTTPSPR|gwcvqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9887 SMAGP::TFCP2 ENSG00000170545.17::ENSG00000135457.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1749 TRUE 690 SMAGP ENSG00000170545.17 protein_coding - - chr12:51244558-51270415:- chr12:51269245:- chr12:51638342-51664199:- chr12:51663029:- TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51096040:- chr12:51487439-51566918:- chr12:51489823:- chr12:51261996,chr12:51261998,chr12:51262068,chr12:51262044 chr12:51100450,chr12:51100449,chr12:51100645,chr12:51100621 NA NA chr12:51655780,chr12:51655782,chr12:51655852,chr12:51655828 chr12:51494233,chr12:51494232,chr12:51494428,chr12:51494404 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 1 2 13 952 723 ENST00000603798.6 ENST00000257915.10 upstream downstream duplicates(1),mismatches(1) CGACTGGAAAG___ATCTGCCTCTTCTCCAAGAAACTCAACCACTAGTGACAATGACCAGCCTCCTGACTACTCCTTCTCCAAGAG|ATGATACAGAACTTTCAGGAAGAAGCATGTTTTATTCTGGACACAATGAAAG___CAGAAACCAATGATAGCTATCATATCATACTGAAGTAGGAGTGCGGCGTTTCGTGCCCAGTGGCTGCTCCTTCCTTCACC MTSLLTTPSPR|ddtelsgrsmfysghnesrnq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9888 KDM5B::BRINP3-DT ENSG00000117139.18::ENSG00000237457.6 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1750 TRUE 691 KDM5B ENSG00000117139.18 protein_coding - - chr1:202724495-202808487:- chr1:202745858:- chr1:202693623-202777615:- chr1:202714986:- BRINP3-DT ENSG00000237457.6 lncRNA + + chr1:190478551-190480735:+ chr1:190480345:+ chr1:190447681-190449865:+ chr1:190449475:+ chr1:202744327 chr1:190479433 NA NA chr1:202713455 chr1:190448563 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none ARID/BRIGHT_DNA_binding_domain(100%),C5HC2_zinc_finger(100%),JmjC_domain__hydroxylase(100%),PHD-finger(33%),PLU-1-like_protein(5%),jmjN_domain(100%)| ARID(100%),JmjC(100%),JmjN(100%),PHD(12%),PLU-1(0%),zf-C5HC2(100%)| 41 58 69 170 149 ENST00000367265.9 ENST00000436905.5 upstream upstream duplicates(11),low_entropy(9),mismatches(6) GTTCTTGTAAACCTGGCCTTCTTGTTTGCCTGCATCATGTAAAAGAATTGTGTTCCTGTCCTCCTTACAAATATAAATTGCG___GTATAGGTACACGCTGGATGATCTCTACCCTATGATGAATGCATTGAAGCTTCGAGCAGAATCTTACAACGAATGGGCCTTGAATGTGAATGAAGCTTTGGAGGCAAAGATCAACAAGAAGAAAA|GCTGTTGTCCAGCTCTAATGATGTCCTAGAGCAGAAGTGTTTCTTCTGATGTCTCATTTTAACAAGAGGATGATGTCTGTGTATGTCTCTGTGTTTTAGAGAGGCTGGCAAATGCTGCTAAGAGGATCTGAGGTTCACATAAAGAGGATGAAAATTCTGAATTACTTTCATTGCAAATAAACCTTAACAATTGTGAGAGTTAGAGAGCATACTTTTCACATAAGACTTTGGTATGCTG SCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKK|sccpalmms* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9889 KDM5B::BRINP3-DT ENSG00000117139.18::ENSG00000237457.6 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1750 TRUE 691 KDM5B ENSG00000117139.18 protein_coding - - chr1:202724495-202808487:- chr1:202773118:- chr1:202693623-202777615:- chr1:202742246:- BRINP3-DT ENSG00000237457.6 lncRNA + + chr1:190478551-190480735:+ chr1:190480345:+ chr1:190447681-190449865:+ chr1:190449475:+ chr1:202744327 chr1:190479433 NA NA chr1:202713455 chr1:190448563 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none ARID/BRIGHT_DNA_binding_domain(100%),jmjN_domain(100%)| ARID(100%),JmjN(100%)| 0 1 0 186 149 ENST00000367265.9 ENST00000436905.5 upstream upstream none GCATTATGAACGAATTCTCAACCCCTACAACTTATTCCTGTCCGGAGACAGCCTAAGG|GCTGTTGTCCAGCTCTAATGATGTCCTAGAGCAGAAGTGTTTCTTCTGATGTCTCATTTTAACAAGAGGATGATGTCTGTGTATGTCTCTGTGTTTTAGAGAGGCTGGCAAATGCTGCTAAGAGGA HYERILNPYNLFLSGDSLR|avvql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9890 ADK::CTNNA3 ENSG00000156110.15::ENSG00000183230.18 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74314745:+ chr10:75910960-76469721:+ chr10:76074503:+ CTNNA3 ENSG00000183230.18 protein_coding - + chr10:65912457-67763637:- chr10:66234880:+ chr10:67672215-69523395:- chr10:67994638:+ chr10:74367633,chr10:74367633,chr10:74367633 chr10:66201005,chr10:66201268,chr10:66201003 NA NA chr10:76127391,chr10:76127391,chr10:76127391 chr10:67960763,chr10:67961026,chr10:67960761 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none pfkB_family_carbohydrate_kinase(17%)| PfkB(22%)| 41 49 66 2376 139 ENST00000673310.1 unknown downstream upstream duplicates(5),inconsistently_clipped(1),mismappers(11),mismatches(7) TCGGACGCGGGCGCCGTGGCGCTGGGCAGGAGGGCGAAGCCATGACGTCAGTCAG___AGAAAATATTCTCTTTGGAATGGGAAATCCTCTGCTTGACATCTCTGCTGTAGTGGACAAAGATTTCCTTGATAA___GTATTCTCTGAAACCAAATGACCAAATCTTGGCTGAAGACAAACACAAGGAACT___GTTTGATGAACTTGTGAAAAAATTCAAAGTCGAATATCATGCTGGTGGCTCTACCCAGAATTCAATTAAAGTGGCTCAG|GCTCTTTCTCACTTTCTCATTTGATTCCTGCAATTGAAGCCATCTGCTATGCTGTGTCCTGTTCTTTGGATCAGCACAcATGACAAGGAAGTGAAAGTAGTCTCTGTCCAACAATCAGTCTAACAGCCTGAGAAGAACTGAATTCTGTCAATGACCACGTAAGCTTCGAAGCAGACCTTTCGCTTGTTGAGCCTTCAGATAGACAGCAGCCCTAGCTGACATCTTAACTGCAGTCTTGTGACAGG MTSVRENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQNSIKVAQ|alshfli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9891 MIER2::PPFIA3 ENSG00000105556.12::ENSG00000177380.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1000 TRUE 1751 TRUE 692 MIER2 ENSG00000105556.12 protein_coding - - chr19:305573-344815:- chr19:340514:- chr19:305573-344815:- chr19:340514:- PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49141420:+ chr19:49622801-49654283:+ chr19:49644677:+ chr19:340133,chr19:340138 chr19:49141032,chr19:49141027 NA NA chr19:340133,chr19:340138 chr19:49644289,chr19:49644284 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 50 67 38 116 175 ENST00000592722.1 ENST00000334186.9 upstream upstream duplicates(6),mismatches(6) GGAAGACCAACCCCTCCTCTTCCTCCTCAGCCTACTCAACGTGAAGATGATGAGGACGAAGACCTTTAGGATGATCCACTTCCACTTAATGAATA|CTGGAACACCCTCAGATGAGACACTGGCCACTGACCCTCTGGGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAGGAACAAGAGGAA___GCATGAACTCCTGGAGGAGGCCTGCCGCCAGGGCCTACCTTTTGCTGCCTGGGACGGGCCCACCGTGGTGTCCTGGCTGGAG___CTGTGGGTGGGCATGCCTGCCTGGTATGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9892 MIER2::PPFIA3 ENSG00000105556.12::ENSG00000177380.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1751 TRUE 692 MIER2 ENSG00000105556.12 protein_coding - - chr19:305573-344815:- chr19:340514:- chr19:305573-344815:- chr19:340514:- PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49145943:+ chr19:49622801-49654283:+ chr19:49649200:+ chr19:340133,chr19:340138 chr19:49141032,chr19:49141027 NA NA chr19:340133,chr19:340138 chr19:49644289,chr19:49644284 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |SAM_domain_(Sterile_alpha_motif)(67%) |SAM_1(75%),SAM_2(100%) 0 1 2 116 160 ENST00000592722.1 ENST00000602351.5 upstream upstream none GGAAGACCAACCCCTCCTCTTCCTCCTCAGCCTACTCAACGTGAAGATGATGAGGACGAAGACCTTTAGGATGATCCACTTCCACTTAATGAATA|TCCACAGGAAACGTGTGGA...CGACCAAGCCC___ATCCTGGCATATGGCGACATGAACCACGAGTGGGTGGGGAACGACTGGCTGCCCAGCCTGGGGCTGCCCCAATACCGCAGCTACTTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9893 MIER2::PPFIA3 ENSG00000105556.12::ENSG00000177380.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1751 TRUE 692 MIER2 ENSG00000105556.12 protein_coding - - chr19:305573-344815:- chr19:344774:- chr19:305573-344815:- chr19:344774:- PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49141420:+ chr19:49622801-49654283:+ chr19:49644677:+ chr19:340133,chr19:340138 chr19:49141032,chr19:49141027 NA NA chr19:340133,chr19:340138 chr19:49644289,chr19:49644284 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 0 1 0 7 175 ENST00000635755.1 ENST00000334186.9 upstream upstream none CGCGCACACACGGCCATGGCGGAG|CTGGAACACCCTCAGATGAGACACTGGCCACTGACCCTCTGGGGCTAGCCAAGCTGACAGGCCCAGGAGACAAGGACCGAAGGAACAAGAGGAA___GCATGAACTCCTG MAE|lehpqmrhwpltlwg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9894 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1001 TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111722:+ chr10:76859344-76941881:+ chr10:76871480:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(53%) DSPc(100%),Y_phosphatase(100%)|PfkB(36%) 6 100 24 377 2037 ENST00000671730.1 ENST00000539909.6 downstream upstream duplicates(11),mismatches(13) TGAGGCGCTTCACTCCGGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAG|GGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACA___GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCC EALHSGEAGRAPDSDGGSDADSEVGPGSPTRTAE|GFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 TRUE|FALSE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9895 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111778:+ chr10:76859344-76941881:+ chr10:76871536:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense stop-codon 5'UTR/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(53%) DSPc(100%),Y_phosphatase(100%)|PfkB(36%) 13 36 76 211 2037 ENST00000671730.1 ENST00000539909.6 downstream upstream duplicates(8),mismatches(27) TGAGGCGCTTCACTCCGGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAGGTGAGCGGGAGCTGAGGCTGAGGAGAGGGGAGCTTGGGGGGCGCCTGCTGCCAAGG|GGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACA___GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 FALSE|TRUE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9896 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111778:+ chr10:76859344-76941881:+ chr10:76871536:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525255:+ chr10:75910960-76469721:+ chr10:76285013:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense stop-codon 5'UTR/splice-site intron duplication high none |pfkB_family_carbohydrate_kinase(53%) DSPc(100%),Y_phosphatase(100%)|PfkB(36%) 1 5 76 211 2037 ENST00000671730.1 ENST00000539909.6 downstream upstream duplicates(7),mismatches(22) TTGAGGCGCTTCACTCCGGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAGGTGAGCGGGAGCTGAGGCTGAGGAGAGGGGAGCTTGGGGGGCGCCTGCTGCCAAGG|GGctTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACA___GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 FALSE|TRUE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9897 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1002 TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111722:+ chr10:76859344-76941881:+ chr10:76871480:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(36%) DSPc(100%),Y_phosphatase(100%)|PfkB(23%) 10 55 11 377 2951 ENST00000671730.1 ENST00000539909.6 downstream upstream duplicates(3),mismatches(12) TGAGGCGCTTCACTCCGGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAG|GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAG___AAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTG EALHSGEAGRAPDSDGGSDADSEVGPGSPTRTAE|EAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 TRUE|FALSE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9898 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111778:+ chr10:76859344-76941881:+ chr10:76871536:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense stop-codon 5'UTR/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(36%) DSPc(100%),Y_phosphatase(100%)|PfkB(23%) 15 21 35 211 2951 ENST00000671730.1 ENST00000539909.6 downstream upstream duplicates(5),low_entropy(1),mismatches(19) GGCGCTTCACTCCGGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAGGTGAGCGGGAGCTGAGGCTGAGGAGAGGGGAGCTTGGGGGGCGCCTGCTGCCAAGG|GAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAG___ACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAG___AAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 FALSE|TRUE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9899 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111722:+ chr10:76859344-76941881:+ chr10:76871480:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74670183:+ chr10:75910960-76469721:+ chr10:76429941:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |pfkB_family_carbohydrate_kinase(20%) DSPc(100%),Y_phosphatase(100%)|PfkB(7%) 0 1 2 377 2664 ENST00000671730.1 ENST00000673352.1 downstream upstream duplicates(1),mismatches(1) GGCGAGGCGGGGAGGGCCCCGGACTCCGACGGCGGCTCGGACGCCGACTCGGAGGTGGGTCCGGGGAGCCCGACTCGGACCGCGGAG|AAAGTGAAGTCACTGCTTTTGCTGTCTTGGATC...GAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAG___GTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGACTGAATGTATCCGTGCTG...AAGCATCATAATTAGACGGACTGGCTGCACCTTTCCTGAGAAGCCAGACTTCCACTGATGGAAGAGCTGAAAACACAAGCCCAGGAGTGCAGACAtTGCCC GEAGRAPDSDGGSDADSEVGPGSPTRTAE|KVKSLLLLSW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 TRUE|FALSE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9904 CTNNA1::SIL1 ENSG00000044115.21::ENSG00000120725.13 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA1 ENSG00000044115.21 protein_coding + + chr5:138610967-138935034:+ chr5:138753510:+ chr5:137946656-138270723:+ chr5:138089199:+ SIL1 ENSG00000120725.13 protein_coding - + chr5:138946724-139293557:- chr5:138981853:+ chr5:138282413-138629246:- chr5:138317542:+ chr5:138765874,chr5:138765872 chr5:138980898,chr5:138980893 NA NA chr5:138101563,chr5:138101561 chr5:138316587,chr5:138316582 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' high none none none 3 40 2 154 68 ENST00000627109.2 unknown downstream upstream duplicates(2),low_entropy(3),mismatches(6) CTGGAGGGAGACAAAGCAGCGCCCGTCTGCTTCGGGCCTCTGGAATTTAGCGCTCGCCCAGCTAGCCGCAG|CATTTATCACCACTTGGCACCACACTGTGGTTAGAAGTCTGGCTTTGAAGTCACGCTGCCTGGGTTCATGTCTTGGCTCTGACACAGTCTAGCTGGGCGACACTAG___GGATGAGTGAGATCCCTTATGGTTCCCTTTGACCTGCCTGATTAGCGATTCCACAGGAAAACACCTCCCATGACAAAATGAAAGTAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Catenin Alpha 1 2 AML, MDS, cutaneous melanoma gastric cancer Hereditary Diffuse Gastric Cancer Syndrome epithelial, leukaemia_lymphoma TSG, fusion large_deletion, missense, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 9905 PUS7::ENSG00000243797 ENSG00000091127.14::ENSG00000243797.6 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1004 FALSE NA FALSE NA PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105522052:- chr7:105080108-105162718:- chr7:105162499:- ENSG00000243797 ENSG00000243797.6 lncRNA - - chr7:106372251-106770207:- chr7:106465936:- chr7:106012697-106410653:- chr7:106106382:- chr7:105515345,chr7:105515353 chr7:106467857,chr7:106467862 NA NA chr7:105155792,chr7:105155800 chr7:106108303,chr7:106108308 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 15 13 16 149 28 ENST00000481939.5 ENST00000475791.5 upstream downstream duplicates(2),mismatches(1) CGGCGCGTCGCTGCGCCGCACGTGTGCGAGCCCGGCCGCCGGTGAGTCGGCTGGAGCGCATCTGGTCCTCCGCGCGGAAAGCGCTGCTTTTGCCTGGCCGCCCTAGCCGCTGGCTCATCCAAGTGGCCTTCGCCGCTCTCTTGCGTCCCAACCAGAGCGCTGGCCACCTCGCCGCCCAGCTCACGCCGCGCCCGCGCTCCCAGGCTCCGG|GCTTCTTCTCTGGTTTCCTGTTCTGACCTCCTCTCAACCATGAAcGCCTATACTGTGTTGGTGGCCCTGATGAAGAAATGTGCTTCTTCATTTAGACCCAGGATGGCTGACGGTTTTCTGATTGATTCGTAGCAAAACCTGGAAAGCTAGATTGAGCGATTTAAAGCCCAGGCCAAGTGCAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9911 PTEN::C1orf112 ENSG00000171862.15::ENSG00000000460.17 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTEN ENSG00000171862.15 protein_coding + + chr10:87862638-87971930:+ chr10:87894109:+ chr10:89622395-89731687:+ chr10:89653866:+ C1orf112 ENSG00000000460.17 protein_coding + - chr1:169662007-169854080:+ chr1:169817275:- chr1:169631245-169823221:+ chr1:169786416:- chr10:87904338,chr10:87904327 chr1:169834829,chr1:169834835 NA NA chr10:89664095,chr10:89664084 chr1:169803970,chr1:169803976 NA NA sense antisense unknown CDS/splice-site intron translocation/5'-5' high none none none 11 11 14 59 99 ENST00000693560.1 unknown downstream downstream duplicates(2),mismatches(9) GCAACCATCCAGCAGCCGCCGCAGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCGGCGGCAGAGCGAGGGGCATCAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAAGgAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCTCCTTTTTCTTCAGCCACAGGCTCCCAGACATGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCT___ATATTTATCCAAACATTATTGCTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAG|GTTTCTGATAACTTTGGCAATTGTGACATTAAAATAGAGGAAAGAAATTTTCAGGACTCTCATGAAGAGATGGAGTGTTCGTGGATATCAAACAGGGCAAGCATTAACTACATGGACTGAACTAACAGAAGACTGAAGTAATTTTTTTTTTTTTACTTTTTGTTTAAAATGTTGCTGATTCTTTGTTTTATTTTTCAGAGTCAAGAAAACTTCTTTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatase and tensin homolog gene 1 Yes glioma, prostate, endometrial harmartoma, glioma, prostate, endometrial Cowden syndrome, Bannayan-Riley-Ruvalcaba syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 9912 USP54::LRMDA ENSG00000166348.20::ENSG00000148655.16 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP54 ENSG00000166348.20 protein_coding - - chr10:73497538-73626117:- chr10:73575512:- chr10:75257296-75385875:- chr10:75335270:- LRMDA ENSG00000148655.16 protein_coding + - chr10:75431624-76560168:+ chr10:76384996:- chr10:77191382-78319926:+ chr10:78144754:- chr10:73573776,chr10:73573778 chr10:76395272,chr10:76395271 NA NA chr10:75333534,chr10:75333536 chr10:78155030,chr10:78155029 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquitin_carboxyl-terminal_hydrolase(6%)| UCH(0%)| 9 16 10 98 24 ENST00000422491.7 unknown upstream downstream duplicates(1),mismatches(2) GTTAAGTATGCGGCGCCAGGAGCT___GCTAAATGTGAACAATAATGTCTTGGAAGAGAAATTATTTTTCAGGGGGTCGTGGTAGTGTACAAGGGATGTTTGCACCTCGAAGCTCAACCTCCATAGCCCCCAGCAAAGGCCTCAGCAATGAGCCAGGGCAAAACAGCTGCTTCCTCAACAGTGCCCTGCAG|GGAGGCTGAATGCTGAAGAGGCTTTTCCCAGACCTGCTCTCATTCAGCATGCCGTCTGGAACTGACAACCCAATTTCGACACCAATCAATCAGTAAGAATTTATTGACTGCTATTATGTTCCCTATACTACCTGTGATATTGGCAGAGACCTAGAAGAATTATAAAACATGGCTGCTTTCTCAAAGAAGATAGAATTGAGTTGGGTTTTCAATATTAACACATGTGGAAGAAATACAAATCCAA MSWKRNYFSGGRGSVQGMFAPRSSTSIAPSKGLSNEPGQNSCFLNSALQ|gg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9913 CAMK2G::KIFBP ENSG00000148660.22::ENSG00000198954.9 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1007 FALSE NA FALSE NA CAMK2G ENSG00000148660.22 protein_coding - - chr10:73812501-73874591:- chr10:73837468:- chr10:75572259-75634349:- chr10:75597226:- KIFBP ENSG00000198954.9 protein_coding + + chr10:68988803-69043544:+ chr10:69010900:+ chr10:70748559-70803300:+ chr10:70770656:+ chr10:73835781,chr10:73835789 chr10:69009829,chr10:69009819 NA NA chr10:75595539,chr10:75595547 chr10:70769585,chr10:70769575 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(100%)|KIF-1_binding_protein_C_terminal(87%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|KBP_C(85%) 13 9 12 821 363 ENST00000322680.7 ENST00000361983.7 upstream upstream mismatches(2) GTGGAGTGTTTGCGCAAGTTCAATGCCCGGAGAAAACTGAAG___GGTGCCATCCTCACGACCATGCTTGTCTCCAGGAACTTCTCAG___CTGCCAAAAGCCTATTGAACAAGAAGTCGGATGGCGGTGTCAAG|CTCCTGAAGCTGAAGGAGAAGTGCCAGAGCTTTATCATCAAAGAAAGGGGGAAATAGCAAGGTGCTGGATCAAATACTGTTTGACTCTCATGCAGAATGCCCAACTCTCCATGCAG___GACAACATAGGAGAGCTTGATCTTGAT VECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVK|llklkekcqsfiikergk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma CAMK CAMK2 Q13555 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9916 REEP3::RGS7 ENSG00000165476.14::ENSG00000182901.18 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA REEP3 ENSG00000165476.14 protein_coding + + chr10:63521401-63625128:+ chr10:63566410:+ chr10:65281161-65384888:+ chr10:65326170:+ RGS7 ENSG00000182901.18 protein_coding - + chr1:240767636-241357374:- chr1:240984962:+ chr1:240930936-241520674:- chr1:241148262:+ chr10:63592631,chr10:63592628 chr1:240920936,chr1:240920930 NA NA chr10:65352391,chr10:65352388 chr1:241084236,chr1:241084230 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none TB2/DP1__HVA22_family(22%)| TB2_DP1_HVA22(0%)| 9 11 5 706 60 ENST00000373758.5 unknown downstream upstream duplicates(1),mismatches(4) GGCGAAGCGCGCGGCCTGCCGTTGGCGGCCTGGTCCGCAGCGCCCTGCGCCCACCCGCCCCGGACGTGGGGCCCAAGCCCCCGTGAAGATGGTGTCCTGGATGATCTCCAGAGCCGTGGT___GCTGGTGTTTGGAATGCTTTATCCTGCATATTATTCATACAAAGCTGTGAAAACAAAAAACGTGAAGGAATAT|CTGCCATGGATTTAAATCATTTGGGAAGACAGACTCATCCAGATCCTAAAGGAAGTTTTACTAAAACAGCTCTgAGGGTCAAATGGAAAGGAGATCATTCTCCAGAAGGCAGTTGACCGTGTCCCGGTGTTGTGTTCAACCTTATAGTCTTAGGTTATCTGGAAGCACGATCTTCCCATTGAAAAAGAAAAGGAGAACTCAGCTTTTCACATATACATGTAGTGATCCTTGACCAATGTCGATTCCCAGATACACAAATCTTCCGCACAAGCCCCAAGCACCCTGCTCATTTTTCAGAGTTGAGCATCTATTTGTGGAACATATGTGAGCAGCCAC MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEY|lpwi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9921 PLEKHA6::ASAH2B ENSG00000143850.16::ENSG00000204147.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1757 TRUE 694 PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204367799:- chr1:204187981-204346793:- chr1:204336927:- ASAH2B ENSG00000204147.11 protein_coding + + chr10:50739318-50816495:+ chr10:50806093:+ chr10:52499078-52576255:+ chr10:52565853:+ chr1:204339305,chr1:204339307 chr10:50798322,chr10:50798320 NA NA chr1:204308433,chr1:204308435 chr10:52558082,chr10:52558080 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none |DND1_DSRM(100%) 6 6 5 62 20 ENST00000564627.2 ENST00000483649.1 upstream upstream mismatches(1) ATCTTCTTCATCAA___TGATGAGGAAAAGTCAACCAGCTGGGTGCACCCTGGAACAAAGTCACCCATCCAGAGTGGACACACCTCCTGCCCAG___GTTTGCCCAAGGGCTGGGAAGTGGATTCCACCCAGGAAGGAGCTGTGTATTTCATCAA|GAAGTCCCCATGGGCTGCAGGGGACAGGAAGATCCTGATCTGTGACAAATCGACTGGATGGAATTTTCAGGCTGAAGAGAGGTTGAAACCACAAAATCTTGGACAGTCTTTCATGAGCTCAGGCCTGCAATCATGCCCCACACAGTGAGCCATGGTGAATGCATTTTGAAAAGCAACCTCCTCCCTTCCCTTTTCCTCTTTGTG IFFINDEEKSTSWVHPGTKSPIQSGHTSCPGLPKGWEVDSTQEGAVYFIk|kspwaagdrkilicdkstgwnfqaeerlkpqnlgqsfmssglqscptq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9922 PLEKHA6::ASAH2B ENSG00000143850.16::ENSG00000204147.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1757 TRUE 694 PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204371530:- chr1:204187981-204346793:- chr1:204340658:- ASAH2B ENSG00000204147.11 protein_coding + + chr10:50739318-50816495:+ chr10:50806093:+ chr10:52499078-52576255:+ chr10:52565853:+ chr1:204339305,chr1:204339307 chr10:50798322,chr10:50798320 NA NA chr1:204308433,chr1:204308435 chr10:52558082,chr10:52558080 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none |DND1_DSRM(100%) 0 1 2 86 20 ENST00000564627.2 ENST00000483649.1 upstream upstream none CCGAGATGGCCGATGAGATTGACTGGCTGGACCTGCCCGGCCGGTGGGCCTACGGAGTTGACGGCGGTGGGAGAATCTTCTTCATCAA___TGATGAGGAAAAGTCAACCAGCTGGGTGCACCCTGGAACAAAGTCACCCATCCAGAGTGGACACACCTCCTGCCCAG|GAAGTCCCCATGGGCTGCAGGGGACAGGAAGATCCTGATCTGTGACAAATCGACTGGATGGAATTTTCAGGCTGAAGAGAGGTTGAAACCACAAAATCTTGGACAGTCTTTCATGAGCTCAGGCCTGCAATCATGCCCCACACAGTGAGCCATGGTGAATGCATTTTGAAAAGCAACCTCCTCCCTTCCCTTTTCCTCTTTGTG MADEIDWLDLPGRWAYGVDGGGRIFFINDEEKSTSWVHPGTKSPIQSGHTSCP|gsphglqgtgrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9923 AATF::SFMBT2 ENSG00000275700.6::ENSG00000198879.13 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AATF ENSG00000275700.6 protein_coding + + chr17:36948925-37056871:+ chr17:36953907:+ chr17:35306225-35414171:+ chr17:35311207:+ SFMBT2 ENSG00000198879.13 protein_coding - + chr10:7158624-7411488:- chr10:7164107:+ chr10:7200586-7453450:- chr10:7206069:+ chr17:36962182,chr17:36962175 chr10:7163828,chr10:7163818 NA NA chr17:35319482,chr17:35319475 chr10:7205790,chr10:7205780 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Apoptosis_antagonizing_transcription_factor(37%)| AATF-Che1(1%)| 4 4 5 161 15 ENST00000680340.1 unknown downstream upstream mismappers(5),mismatches(2),multimappers(1) AAGGCGAGAGTGAGGAAGACAGGGCTGGAGATAGAAACAGTGAGGATGATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGAGGAAGTGGAGAAAGGAAGAGCCGTGAAGAACCAGATAG___CACTGTGGGACCAGCTCTTGGAAGGAAGGATCAAACTACAAAAAGCTCTGTTGACCACCAACCAGCTTCCTCAACCAGATGTTTTCCCATTGTTCAAGGACAAAGGTGGCCCAGAATTTTCCAGTGCCCTGAAAAATA|CCGGGCACAGTGGCTCACGCCTATAATTCCAGCACTTTGGAAGGCTGAGGCTGGAGGATCGCTTGAGACCAGGAGTTTGAGACAAGTCTGGGTAACACGGTGAGATACGGTCTCTACAAAAAATTTAAAAAT...___ATGAGCACTAGCTATGATGTAAGC GESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEGRIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKN|tghsgsrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9925 DPF3::DGLUCY ENSG00000205683.12::ENSG00000133943.21 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPF3 ENSG00000205683.12 protein_coding - - chr14:72609034-72894101:- chr14:72669952:- chr14:73075742-73360809:- chr14:73136660:- DGLUCY ENSG00000133943.21 protein_coding + - chr14:91060333-91225632:+ chr14:91202633:- chr14:91526677-91691976:+ chr14:91668977:- chr14:72666213,chr14:72666215 chr14:91213867,chr14:91213867 NA NA chr14:73132921,chr14:73132923 chr14:91680211,chr14:91680211 NA NA sense antisense unknown 3'UTR/splice-site intron duplication/5'-5' high none DPF1-3__N-terminal(100%)| PHD(7%),Requiem_N(100%)| 4 1 8 135 15 ENST00000614862.5 unknown upstream downstream mismatches(1) CCGGTGGGGAGAATTTCCTCAATGGGAGACGGTTGCACTATTCTGTGCCCCACGGAGTTTGCGGCTCCCCGCGGCAGACCCCgCCCTCATTCTCCTCCCTG...CTGTTTTGTTATTGCTGGTTTTTCCTCACTTTCCTCCTGGCAAAGAACGACTTCCAAATGCAGGGATGGAATATAAGCAGAACGTCATGGGCTCAGCAGTG...CCGTGCTTCTGGAAGATAGAAGGAGACATCATCGTGTGTTTCCCCTCCCCTTGCCCCTGTTAAGAAACGTATCAATACCCATTGGATGATCAAGGCTACCGTATTTCTTCTATTTTTTTTTATAGTGCCTGCCAGGCACTTTGTTTTATGTTTCCAATAGCACTTCCTGAAATAAACCAAAGCAACACTGCTCAAGGCCCCTGGGGCGATGGAGAAGGCCACCCACCTCACTGACAGTCCCAAGAATGACCGGCTGCGAGGTCCTAGTCAAAAG|GCTGAGGTCCTCTGCCTGCCCAGCCGGAGGGACAGGAAGCTGGAAGCCAACAGGAAGCTGGAAGCCAACAGGAAGCTGGAAGCCAACCGCACTGTGTGCACCACACCCACAGCCTCTTCTGGGAAAAGCCAGGGCGATTTGCAGAAACGTTCTAATCAGCGCAGAAGGCTCTCACTGTCTCATCAAAACCTCAAAAGCCAAAGGAGACTAATGAGTCTGGGAAACACTTGGAAACATGCAATGAC...CAGAGtGAAGAAAGGTTCTCCTTGGGGCTTACACTAAGCCTTTCCGCAATTCATAAAGGCATGATTCCCTGATAAAGGGCTGGGGCCCCAGGAGTCTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9928 ATG10::ENSG00000250237 ENSG00000152348.16::ENSG00000250237.3 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATG10 ENSG00000152348.16 protein_coding + + chr5:81972023-82276857:+ chr5:82178587:+ chr5:81267842-81572676:+ chr5:81474406:+ ENSG00000250237 ENSG00000250237.3 lncRNA - + chr5:68535024-68759652:- chr5:68662072:+ chr5:67830851-68055479:- chr5:67957899:+ chr5:82217180,chr5:82217180 chr5:68609895,chr5:68609892 NA NA chr5:81512999,chr5:81512999 chr5:67905722,chr5:67905719 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Autophagocytosis_associated_protein__active-site_domain_(72%)| Autophagy_act_C(71%)| 5 4 2 50 11 ENST00000282185.8 unknown downstream upstream duplicates(1),inconsistently_clipped(1) TGTCACATCTAGGAGCATCTACCCATGGACAGACATGTCTTCCCATGGAG___GAGGCTTTCGAGCTACCCTTGGATGATTGTGAAGTGATTGAAACTGCAGCAGCGTCCGAAGTGATTAAATATGAGTATCATGTCTTATATTCCTGTAGCTACCAAGTGCCTGTACTTTACTTTAGGGCAAGCTTTTTAG___ATGGGAGACCTTTAACTCTGAAGGACATATGGGAAGGAGTTCATGAGTGCTATAAGATGCGACTGCTACAGGGACCATGGGACACTATTACGCAACAG|AGCCTTGAAAGAAATCAGAAGAGATTCTGAGGAGGTAGCTAAGGAATCCCAGATCACCTAAGAGTTTGGAAAGAAGAAAGAGGGCATGGCACACCCAGG SHLGASTHGQTCLPMEEAFELPLDDCEVIETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLKDIWEGVHECYKMRLLQGPWDTITQQ|slernqkrf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9929 IPO11::LINC01339 ENSG00000086200.17::ENSG00000248555.7 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IPO11 ENSG00000086200.17 protein_coding + + chr5:62403972-62628582:+ chr5:62601848:+ chr5:61699799-61924409:+ chr5:61897675:+ LINC01339 ENSG00000248555.7 lncRNA - + chr5:90153052-90290078:- chr5:90227664:+ chr5:89448869-89585895:- chr5:89523481:+ chr5:62626480,chr5:62626481 chr5:90204030,chr5:90204028 NA NA chr5:61922307,chr5:61922308 chr5:89499847,chr5:89499845 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Importin-beta_N-terminal_domain(100%)| IBN_N(100%),LRRCT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%)| 2 2 6 98 6 ENST00000325324.11 unknown downstream upstream none TTTAATCAGGAG___ATGGACCAGCTTTTGGGAAATATGATTGAAATGTGGGTTGATCGAATGGACAACATTACCCAGCCTGAAAGAAGAAAACTTTCAGCTTT...CCTGCATGATGTCATGACGGAAGATCCTGAAACAGGAACTTATAAAGA___CTGTATGTTGATGTCTCATCTTGAGGAACCAAAAGTAACAGAAGATGAAGAACCACCCACAGAACAAGATAAGAGGAAAAAGATG|GATCATCCTTGCTTTCCTGGGCCCATTTCAGTCTTATTGGTTTGGAATCTGGACTGCAGCGTTTTCTTTTCCAAGTCCTGGCTGGGCTCCTTGGAAGCAGAGTGCCCCCACCCAGCCATAAAG...ATTGTGAGCACTTTGAAACTGATGCCAAACCAAATCAAGCCCAGTGGACACAGTCCCTTGCACACTGACTGGATTCCTGCACGCCCTCCTTTGGGTTGGCCCTACAGCCTGGTGCCAGGCCAATGAAAGCTCAGTCCTGCCCACcCCCCTCCCTGCCACACTCCAGAGATCCCACAGTGCCTCTGAGCTTGTCTCAGGGGTGCGAAAGTCAG LHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQDKRKKM|dhpcfpgpisvllvwnldcsvffskswlgsleaecphpai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9937 ZMIZ1::CTNNA3 ENSG00000108175.19::ENSG00000183230.18 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMIZ1 ENSG00000108175.19 protein_coding + + chr10:79068966-79316519:+ chr10:79277325:+ chr10:80828723-81076276:+ chr10:81037082:+ CTNNA3 ENSG00000183230.18 protein_coding - - chr10:65912457-67763637:- chr10:66280621:- chr10:67672215-69523395:- chr10:68040379:- chr10:79278455,chr10:79278456 chr10:66296543,chr10:66296541 NA NA chr10:81038212,chr10:81038213 chr10:68056301,chr10:68056299 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Zmiz1_N-terminal_tetratricopeptide_repeat_domain(100%)|Vinculin_family(33%) Zmiz1_N(100%)|Vinculin(6%) 0 1 5 107 20 ENST00000334512.10 ENST00000684154.1 downstream downstream mismatches(1) GCTACAGACTGCTGGCTGTGTGTGCTGCAAACCGAGACAAGTTCACCCCGAAGTCTGCCG___CCTTGTTGTCCTCCTGGTGCGAAGAGCTCGGCCGCCTGCTGCTGCTCCGACATCAGAAGAGCCGCCAGAGCGATCCCCCTGGGAAACTCCCCATGCAGCCCCCTCTCAGCTCCATGAGCTCCATGAAACCCACTCTGTCGCACAG|TAATTCCTGAATTTGTAACACAAGTGAATGTTGCCTTGGAAGCCTTAAGCAAAAGCTCATTGAATGTGTTGGATGATAATCAATTTGTGGACATCTCAAAGAAGATCTATGATACAATTCATGATATCAGATGTTCAGTCATGATGATTCGG___ACCCCAGAGGAACTGGAGGATGTTTCTGACCTTGAAGAGGAACACGAGGTCCGCAGTCACACCAGCATTCAGACCGAAGGGAAAACTGATAGGG...TGAGATTGAtgTATGGGATGAgACAAGCAACGgCATCATTGTTCTGGCCAAGAACATGTGTATGATCATGATGGAGATGACAGACTTCACTAG___GGGCAAAG YRLLAVCAANRDKFTPKSAALLSSWCEELGRLLLLRHQKSRQSDPPGKLPMQPPLSSMSSMKPTLSHs|ns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9938 IPO11::RANBP17 ENSG00000086200.17::ENSG00000204764.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1759 TRUE 695 IPO11 ENSG00000086200.17 protein_coding + + chr5:62403972-62628582:+ chr5:62591672:+ chr5:61699799-61924409:+ chr5:61887499:+ RANBP17 ENSG00000204764.14 protein_coding + + chr5:170861870-171300015:+ chr5:171183195:+ chr5:170288874-170727019:+ chr5:170610199:+ chr5:62598094,chr5:62598094 chr5:171174247,chr5:171174244 NA NA chr5:61893921,chr5:61893921 chr5:170601251,chr5:170601248 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Importin-beta_N-terminal_domain(100%)| IBN_N(100%),LRRCT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%)| 1 0 4 117 3 ENST00000325324.11 ENST00000520586.5 downstream upstream mismatches(1) CAGCTTTTGGGAAATATGATTGAAATGTGGGTTGATCGAATGGACAACATTACCCAGCCTGAAAGAAGAAAACTTTCAGCTTTGGCTTTGCTCTCTCTTCTGCCATCTGATAATAG___TGTTATCCAAGATAAATTCTGTGGGATTATAAACATTTCAGTAGAAGGCCTGCATGATGTCATGACGGAAGcTCCTGAAACAGGAACTTATAAAGA|ATAGATGCTGTGAAATTCATGCTAAAAAACCACACG___AGTGAACACTTCCCTTTTCTTGGCATCAGTGACAATCATAGTCTCAGCGACTTCAGGTGTCGAACAACCTTCTACACAGCGCTCACTCGCCTTCTGATGGTAGATCTGG___GTGAAGATGAG QLLGNMIEMWVDRMDNITQPERRKLSALALLSLLPSDNSVIQDKFCGIINISVEGLHDVMTEaPETGTYKe|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9939 IPO11::RANBP17 ENSG00000086200.17::ENSG00000204764.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1759 TRUE 695 IPO11 ENSG00000086200.17 protein_coding + + chr5:62403972-62628582:+ chr5:62591672:+ chr5:61699799-61924409:+ chr5:61887499:+ RANBP17 ENSG00000204764.14 protein_coding + + chr5:170861870-171300015:+ chr5:171221758:+ chr5:170288874-170727019:+ chr5:170648762:+ chr5:62598094,chr5:62598094 chr5:171174247,chr5:171174244 NA NA chr5:61893921,chr5:61893921 chr5:170601251,chr5:170601248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Importin-beta_N-terminal_domain(100%)| IBN_N(100%),LRRCT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%)| 0 1 1 117 17 ENST00000325324.11 ENST00000523189.6 downstream upstream mismatches(1) TGTTATCCAAGATAAATTCTGTGGGATTATAAACATTTCAGTAGAAGGCCTGCATGATGTCATGACGGAAGATCCTGAAACAGGAACTTATAAAGA|ATCCCAGCGTTTGAATTTTGATGTATCATCTCCTAATGGAATTCTTCTCTTCAGAGAAGCTAGTAAAATGG...GCTCTCAAGTCTGCCTTGTGTGGAAATTATGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGAaAgttATTTTGACtATGTACTCCAGGCTTTTGTCAAAATGCTGCTGTCAGTGTCCCACAGTGACTTGCTA___CAATACCGGAAACTGAGCCAGTCTTATTATCCACTCCTGGAATGTCTCAC VIQDKFCGIINISVEGLHDVMTEDPETGTYKe|SQRLNFDVSSPNGILLFREASKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9943 ACOT2::DGLUCY ENSG00000119673.16::ENSG00000133943.21 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ACOT2 ENSG00000119673.16 protein_coding + + chr14:73567620-73575658:+ chr14:73573590:+ chr14:74034324-74042362:+ chr14:74040294:+ DGLUCY ENSG00000133943.21 protein_coding + - chr14:91060333-91225632:+ chr14:91159895:- chr14:91526677-91691976:+ chr14:91626239:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Acyl-CoA_thioester_hydrolase/BAAT_N-terminal_region(100%),BAAT_/_Acyl-CoA_thioester_hydrolase_C_terminal(8%)| BAAT_C(2%),Bile_Hydr_Trans(100%)| 1 2 1 299 4 ENST00000238651.10 unknown downstream downstream none TGGGATTGTGGACATGTTCGGAACTGGAGGTGGCCTGCTGGAGTATCGGGCTAGTCTGCTGGCTGGGgAGGGTTTTGCTGTGATGGCTCTGGCTTATTATAACTATGAAGACCTCCCCAAGACCATGGAGACGCTCCATCTGGAGTACTTTGAAGAAGCCATGAACTACTTGCTCAGTCATCCCGAG|GGCCTCGAGGGCAGGGACACATGTGAGACTTCTTCCACAGGCTCCAGAGCACCCATCACAGCCTATGCACATAGCACGTGCCCAAAATACACACAGTTGAATGAACAGACGAATGAATACCACCGCAATCGCAcGTGAAATAAGA GIVDMFGTGGGLLEYRASLLAGeGFAVMALAYYNYEDLPKTMETLHLEYFEEAMNYLLSHPE|glegrdtcetsstgsrapitayahstcpkytqlneqtneyhrnrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9954 ACOT4::RGS6 ENSG00000177465.5::ENSG00000182732.18 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACOT4 ENSG00000177465.5 protein_coding + + chr14:73591873-73595766:+ chr14:73592416:+ chr14:74058577-74062470:+ chr14:74059120:+ RGS6 ENSG00000182732.18 protein_coding + + chr14:71932429-72566530:+ chr14:72510154:+ chr14:72399146-73033238:+ chr14:72976862:+ chr14:73593277,chr14:73593275 chr14:72496933,chr14:72496928 NA NA chr14:74059981,chr14:74059979 chr14:72963641,chr14:72963636 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Acyl-CoA_thioester_hydrolase/BAAT_N-terminal_region(100%)|Regulator_of_G_protein_signaling_domain(100%) Bile_Hydr_Trans(100%)|RGS(100%) 0 1 1 18 3 ENST00000326303.5 ENST00000553525.6 downstream upstream mismatches(1) GCTCTGGGCCCTGGAACCCGAGAAGCCTTTTTGGCGCTTCCTGAAGCGGGACGTACAGATTCCTTTTGTCGTGGAGTTGGAGGTGCTGGACGGCCACGACCCCGAGCCTGcACGGCcGCT...CGGCGCCAGTCGGTGCGAGCGGGCCGGGTGCGCGCCACGCTCTTCCTGCCGCCAG|CAAAGAGaCCAGaCAACAGCGAGTAAAAAGATGGGGCTTCTCTTTCGATGAGATATTGAAGGACCAGGTGGGGCGGGACCAGTTTCTACGATTCCTGGAGTCCGAATTCAGTTCAGAAAACCTCAG___GTTCTGGCTGGCTGTCCAAGATCTTAA RRQSVRAGRVRATLFLPP|akrpdnse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7843 chr14:72516820-72516898:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9965 SH3TC2::IPO11 ENSG00000169247.14::ENSG00000086200.17 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SH3TC2 ENSG00000169247.14 protein_coding - - chr5:148923639-149063163:- chr5:149006881:- chr5:148303202-148442726:- chr5:148386444:- IPO11 ENSG00000086200.17 protein_coding + + chr5:62403972-62628582:+ chr5:62483101:+ chr5:61699799-61924409:+ chr5:61778928:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none SH3_domain(100%)| SH3_1(100%)|LRRCT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%) 1 0 1 73 50 ENST00000504690.5 ENST00000325324.11 upstream upstream none GCCTTTCACCGCCTGGCTACAGTGTACTACTCCCTGCACATGTATGAGATGGCTGAGGACTGCTACCTGAAGACCCTGTCCCTCTGTCCACCATGGCTGCA...TGCCAAGGTGTATTATCGCCTGGGCAGACTCACCTTCTGCCAGCTGAAG|CTTTTGGACTTCTTGGATCAGCATCCTTTTTCATTTACTCCTCTAATTCAGA AKVYYRLGRLTFCQLK|LLDFLDQHPFSFTPLIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-584 chr5:149062313-149062409:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9968 ENSG00000288797::RGS6 ENSG00000288797.1::ENSG00000182732.18 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288797 ENSG00000288797.1 lncRNA + + chr14:73592139-73595766:+ chr14:73592416:+ chr14:74058843-74062470:+ chr14:74059120:+ RGS6 ENSG00000182732.18 protein_coding + + chr14:71932429-72566530:+ chr14:72510154:+ chr14:72399146-73033238:+ chr14:72976862:+ chr14:73593277,chr14:73593275 chr14:72496933,chr14:72496928 NA NA chr14:74059981,chr14:74059979 chr14:72963641,chr14:72963636 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Regulator_of_G_protein_signaling_domain(100%) |RGS(100%) 0 1 1 18 3 ENST00000686335.1 ENST00000553525.6 downstream upstream mismatches(1) GCTCTGGGCCCTGGAACCCGAGAAGCCTTTTTGGCGCTTCCTGAAGCGGGACGTACAGATTCCTTTTGTCGTGGAGTTGGAGGTGCTGGACGGCCACGACCCCGAGCCTGcACGGCcGCT...CGGCGCCAGTCGGTGCGAGCGGGCCGGGTGCGCGCCACGCTCTTCCTGCCGCCAG|CAAAGAGaCCAGaCAACAGCGAGTAAAAAGATGGGGCTTCTCTTTCGATGAGATATTGAAGGACCAGGTGGGGCGGGACCAGTTTCTACGATTCCTGGAGTCCGAATTCAGTTCAGAAAACCTCAG___GTTCTGGCTGGCTGTCCAAGATCTTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7843 chr14:72516820-72516898:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9969 DGLUCY::NUMB ENSG00000133943.21::ENSG00000133961.21 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1763 TRUE 696 DGLUCY ENSG00000133943.21 protein_coding + + chr14:91060333-91225632:+ chr14:91060704:+ chr14:91526677-91691976:+ chr14:91527048:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73410068:- chr14:73741815-73925323:- chr14:73876776:- chr14:91104566 chr14:73440169 NA NA chr14:91570910 chr14:73906877 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |NumbF(100%),PID(100%),PID_2(100%),PTB(100%) 1 0 1 2 245 ENST00000521334.5 ENST00000554546.5 downstream downstream none CTCGCAGCCGCTGCCGCGGCCCCAGGAGTCGGGGTGCGGCGGCTCCAGAACTCGGACGCAAAGACGAGTCTCTTTCCCGCTCTGGCCGCACGGCTCGCTCCTCGCCTCCTCCCCCTTCGGCGGGCACCGCTAGTACCGCGCAACCAAACCGCCCCCTGCTCCACCGCCGCCTCCTCAGGCCGCTCCGCCCACAGCCAGCAAG|ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCA...ATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAA___ATGAGGAAACTGAGGCTTGGTGAAGTTACGAAACTTGTCCAAAATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9970 DGLUCY::NUMB ENSG00000133943.21::ENSG00000133961.21 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1763 TRUE 696 DGLUCY ENSG00000133943.21 protein_coding + + chr14:91060333-91225632:+ chr14:91060704:+ chr14:91526677-91691976:+ chr14:91527048:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73355766:- chr14:73741815-73925323:- chr14:73822474:- chr14:91104566 chr14:73440169 NA NA chr14:91570910 chr14:73906877 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |NumbF(100%),PID(100%),PID_2(100%),PTB(100%) 0 1 0 2 224 ENST00000521334.5 ENST00000555238.6 downstream downstream none AACCAAACCGCCCCCTGCTCCACCGCCGCCTCCTCAGGCCGCTCCGCCCACAGCCAGCAAG|GCTGTAAAAATTAAAATGAACAAATTACGGCAAAGTTTTA...CACATCTGTGAAGATGCTGTAAAAAGATTGAAAGCT___GAAAGGAAGTTCTTCAAAGGCTTCTTTGGAAAA___ACTGGAAAGAAAGCAGTTAAAGCAGTTCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9971 DGLUCY::NUMB ENSG00000133943.21::ENSG00000133961.21 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1763 TRUE 696 DGLUCY ENSG00000133943.21 protein_coding + + chr14:91060333-91225632:+ chr14:91060704:+ chr14:91526677-91691976:+ chr14:91527048:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73366981:- chr14:73741815-73925323:- chr14:73833689:- chr14:91104566 chr14:73440169 NA NA chr14:91570910 chr14:73906877 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |NUMB_domain(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |NumbF(100%),PID(100%),PID_2(100%),PTB(100%) 0 1 0 2 214 ENST00000521334.5 ENST00000554546.5 downstream downstream none CCCTGCTCCACCGCCGCCTCCTCAGGCCGCTCCGCCCACAGCCAGCAAG|ATGtGGAAACTGAGGCTTGGTGAAGTTACGAAACTTGTCCAAAATCACACAACTTGTAAAGGGCACAGCCAAGATTCAGAGCCAG___GCTGTAAAAATTAAAATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9975 DGAT1::MTMR7 ENSG00000185000.12::ENSG00000003987.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DGAT1 ENSG00000185000.12 protein_coding - - chr8:144314584-144326910:- chr8:144315156:- chr8:145538247-145550573:- chr8:145538819:- MTMR7 ENSG00000003987.14 protein_coding - + chr8:17296794-17413528:- chr8:17371014:+ chr8:17154303-17271037:- chr8:17228523:+ chr8:144314944 chr8:17371005 chr8:144314938,chr8:144314938,chr8:144314958 chr8:17371019,chr8:17371015,chr8:17371015 chr8:145538607 chr8:17228514 chr8:145538601,chr8:145538601,chr8:145538621 chr8:17228528,chr8:17228524,chr8:17228524 sense antisense unknown 3'UTR intron inversion/5'-5' low none MBOAT__membrane-bound_O-acyltransferase_family(100%)| MBOAT(100%)| 0 0 5 126 14 ENST00000528718.6 unknown upstream upstream mismatches(2) GGaATGGGTGTGGGGCCGACTCCTCCATCCCACATGGGCTCCTGTGCCTCTCCCTATCAGTTGGaCAGTGGAGCTCGAGAACAAACTGTTGCTGCCAGATA...|...AATGCCGAGTTCCTCTGCCCTACCTGGCCTTGCAAGGCGTATCAGGGAGATGTACACGTCGTGGCAATCTCTTTCCTGAGGTATGATGAGCTGTATTATCTGAAAGTTCTTGCAGCGAATCAGCAGAGGGCATCCGGTAGCGGTTGTTGCCTGTTTCTCAATGGTGGAAATCTGACTGTGAAGAATCTAGAACCAAATGTTAATGTGCATAAGCTAAGCACAAATAACTAATGAATACGACAAGGACTAACATTTCTTTGTGGCTCAAAGAAAGACAAGAAACGCTCCCCAACCTCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6848 chr8:144317246-144317315:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9978 ARHGAP22::LINC01720 ENSG00000128805.15::ENSG00000231175.1 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP22 ENSG00000128805.15 protein_coding - - chr10:48446036-48656265:- chr10:48489483:- chr10:49654079-49864310:- chr10:49697526:- LINC01720 ENSG00000231175.1 lncRNA + + chr1:190624890-190801658:+ chr1:190641920:+ chr1:190594020-190770788:+ chr1:190611050:+ chr10:48489420,chr10:48489430 chr1:190641880,chr1:190641870 NA NA chr10:49697463,chr10:49697473 chr1:190611010,chr1:190611000 NA NA sense sense unknown intron intron translocation low none PH_domain(65%)| PH(90%)| 0 0 2 9 1 unknown unknown upstream upstream none GTAATTCTTATTCATTTAAGTAAAGCTAATACTAATGTTTCCTAAGTTACAGAGAAGAAGGTCAGCATAAACCATGGAACACTGTAGAAAGTCCCCAAGTT...|...GACATCTACTTTCATTATTTAACTAAAATAAATTTTATCACAAAATAACCAGATATAGTCAAATATATAAAGTCTTATGAAGTATAAGCCTTTTATTATAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9980 DGLUCY::ENSG00000285006 ENSG00000133943.21::ENSG00000285006.1 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DGLUCY ENSG00000133943.21 protein_coding + + chr14:91060333-91225632:+ chr14:91060704:+ chr14:91526677-91691976:+ chr14:91527048:+ ENSG00000285006 ENSG00000285006.1 lncRNA - - chr14:73366897-73463642:- chr14:73410068:- chr14:73833605-73930348:- chr14:73876776:- chr14:91104566 chr14:73440169 NA NA chr14:91570910 chr14:73906877 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 1 0 1 2 245 ENST00000521334.5 ENST00000556700.5 downstream downstream none CTCGCAGCCGCTGCCGCGGCCCCAGGAGTCGGGGTGCGGCGGCTCCAGAACTCGGACGCAAAGACGAGTCTCTTTCCCGCTCTGGCCGCACGGCTCGCTCCTCGCCTCCTCCCCCTTCGGCGGGCACCGCTAGTACCGCGCAACCAAACCGCCCCCTGCTCCACCGCCGCCTCCTCAGGCCGCTCCGCCCACAGCCAGCAAG|ATTTGAGGCTTAAGCAACTTCTTCCGGGGAAGAGTGCCA...ATAGATTGGAATATTGGTGGGCCAGCAATCCTCAGACGCCTCACTTAGGACAA___ATGAGGAAACTGAGGCTTGGTGAAGTTACGAAACTTGTCCAAAATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9991 ZNF350::ZNF615 ENSG00000256683.7::ENSG00000197619.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF350 ENSG00000256683.7 protein_coding - - chr19:51964340-51986856:- chr19:51986770:- chr19:52467593-52490109:- chr19:52490023:- ZNF615 ENSG00000197619.15 protein_coding - - chr19:51991332-52008230:- chr19:52003900:- chr19:52494585-52511483:- chr19:52507153:- chr19:51975359 chr19:52006698 NA NA chr19:52478612 chr19:52509951 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 0 2 0 35 33 ENST00000243644.9 ENST00000376716.9 upstream downstream none GTAACGTTGAGGCCCTTCTTGTGTATCTGGAGAAAATAGAG|CCCACAGG?GCTGAGAACAAGAGAAATCAAGTGAAGGAAGGAGGCGGAGTTTCCAAGACTTGGGTGTCATCATTTCTGGGGACATCCTTGATTGGAGATTGAAGTTTTTGAACCGAAATTTAGAGCTGATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9993 EFNA5::ITK ENSG00000184349.14::ENSG00000113263.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EFNA5 ENSG00000184349.14 protein_coding - - chr5:107376894-107670937:- chr5:107670489:- chr5:106712595-107006638:- chr5:107006190:- ITK ENSG00000113263.14 protein_coding + + chr5:157142933-157255185:+ chr5:157222863:+ chr5:156569944-156682195:+ chr5:156649873:+ chr5:107570334,chr5:107570337 chr5:157222113,chr5:157222110 NA NA chr5:106906035,chr5:106906038 chr5:156649123,chr5:156649120 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Ephrin(10%)|Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%) Ephrin(0%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(100%),SH3_1(100%),SH3_10(100%),SH3_2(100%),SH3_9(100%) 1 0 0 11 1 ENST00000333274.11 ENST00000521769.5 upstream upstream none GTGGAGATGTTGACGCTGGTGTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGGGCTCCAAGGCCGTCGCCGACCGCTACGCTGTCTACTGGAACAGCAGCAACCCCAG|CGACCACTTTGGGAACCTGAAGAAACTGTGGTCATTGCCTTATATGACTACCAAACCAATGATCC VEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPs|dhfgnlkklwslpymttkpmi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase ITK/TSK TK Tec Q08881 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IL2-inducible T-cell kinase 1 peripheral T-cell lymphoma leukaemia_lymphoma fusion translocation 9995 MICAL2::PARVA ENSG00000133816.19::ENSG00000197702.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1012 FALSE NA FALSE NA MICAL2 ENSG00000133816.19 protein_coding + + chr11:12094008-12359144:+ chr11:12259897:+ chr11:12115555-12380691:+ chr11:12281444:+ PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12496458:+ chr11:12399110-12556903:+ chr11:12518005:+ chr11:12261439,chr11:12261440 chr11:12485233,chr11:12485231 NA NA chr11:12282986,chr11:12282987 chr11:12506780,chr11:12506778 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Calponin_homology_(CH)_domain(100%),FAD_binding_domain(100%),LIM_domain(100%)|Calponin_homology_(CH)_domain(82%) CAMSAP_CH(100%),CH(100%),FAD_binding_2(100%),FAD_binding_3(100%),LIM(100%),NAD_binding_7(100%),Pyr_redox(100%),Pyr_redox_2(100%)|CH(36%) 90 108 235 1416 865 ENST00000646065.1 ENST00000334956.15 downstream upstream duplicates(88),inconsistently_clipped(2),low_entropy(5),mismappers(3),mismatches(28) ACGGCTGAGCGCCGAGGGCCACTTCTTCCACCGGGAGTGTTTCCGCTGCAGCATCTGTGCCACCACCTTGCGCCTGGCCGCCTACACCTTTGACTGCGATGAAG___GCAAATTTTACTGCAAGCCTCACTTCATTCACTGTAAAACCAATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGCAACAAAGAGAG___GAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTCTTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCCCAG|AGAAACTGGAGAGTGAGAAGCTAAATGTGGCTGAGGTCACCCAGTCAGAGATTGCTCAGAAGCAAAAACTGCAGACTGTCCTGGAGAAGATCAATGAAACCCTGAAACTTCCTCCCAGGAGCATCAAGTGGAATGTGGATT___CTGTTCATGCCAAGAGCCTGGTGGCCATCTTACACCTGCTCGTTGCTCTGTCTCAGTATTTCCGCGCACCAATTCGACTCCCAGACCATGTTTCCATCCAAGTGGTTGTGGTCCAG___AAACGAGAAGGAATCCTCCAGTCTCG RLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRRAELKQQREEEATWQEQEAPRRDTPTESSCAVAAIGTLEGSPP|eKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6124 chr11:12163683-12163767:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9996 PALLD::VMP1 ENSG00000129116.20::ENSG00000062716.13 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1013 FALSE NA FALSE NA PALLD ENSG00000129116.20 protein_coding + + chr4:168497052-168928457:+ chr4:168711923:+ chr4:169418203-169849608:+ chr4:169633074:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr4:168734136,chr4:168734145,chr4:168734175 chr17:59820312,chr17:59820312,chr17:59820312 NA NA chr4:169655287,chr4:169655296,chr4:169655326 chr17:57897673,chr17:57897673,chr17:57897673 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Immunoglobulin_I-set_domain(40%)| I-set(87%),Ig_2(79%),Ig_3(95%),ig(95%)| 27 48 101 188 1374 ENST00000261509.10 ENST00000262291.9 downstream upstream duplicates(29),mismappers(1),mismatches(16) CCTCCAATCTTGGAGACAAGTTCCTTGGAGTTGGCTTCAAAGAAACCATCTGAGATCCAGCAGGTGAACAACCCTGAGTTAGGCCTGAGCAGGGCAGCCCTTCAAATGCAATTCAATGCTGCTGAGAGGGAAACGAACGGAGTCCATCCCAGCCGTGGAGTAAATGGACTGATTAACGGCAAAGCTAACAGTAATAAATCTCTTCCAACACCAGCTGTCCTGCTTTCACCCACTAAGGAGCCACCACCTCTGCTTGCCAAACCAAAACT|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTT PPILETSSLELASKKPSEIQQVNNPELGLSRAALQMQFNAAERETNGVHPSRGVNGLINGKANSNKSLPTPAVLLSPTKEPPPLLAKPKl|AVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9997 SAV1::MAP4K5 ENSG00000151748.15::ENSG00000012983.12 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1014 TRUE 1766 TRUE 697 SAV1 ENSG00000151748.15 protein_coding - - chr14:50632058-50668306:- chr14:50665179:- chr14:51098776-51135024:- chr14:51131897:- MAP4K5 ENSG00000012983.12 protein_coding - - chr14:50418501-50561126:- chr14:50486194:- chr14:50885219-51027844:- chr14:50952912:- chr14:50655681,chr14:50655688 chr14:50503370,chr14:50503374 NA NA chr14:51122399,chr14:51122406 chr14:50970088,chr14:50970092 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |CNH_domain(100%),Protein_kinase_domain(85%) |ABC1(100%),CNH(100%),PK_Tyr_Ser-Thr(32%),Pkinase(33%) 33 48 80 257 138 ENST00000324679.5 ENST00000013125.9 upstream downstream duplicates(28),mismatches(8) CCAGAGTTTCCTTAGAACTCCAATTCAAAGAACACCTCATGAAATAATGAGAAGAGAAAGCAACAGATTATCTGCACCTTCTTATCTTGCCAGAAGTCTAGCAGATGTCCCTAGAGAGTATGGTTCTTCTCAGTCATTTGTAACGGAAGTTAGTTTTGCTGTTGAAAATGGAGACTCTGGTTCCCGATATTATTATTCAGACAATTTTTTTGATGGTCAGAGAAAGCGGCCACTTGGAGATCGTGCACATGAAGACTACAGATATTATGAATACAACCATGATCTCTTCCAAAGAATGCCACAGAATCAGGGGAGGCATGCTTCAG|GAGATGATTTTTCTTTGATTCAACAAGAAATATTTATGGTTAAAGAATGTAAACATTGTAACATCGTTGCCTACTTTGGGAGTTATCTTAG___TCGGGAAAAACTATGGATTTGTATGGAATACTGTGGTGGCGGATCACTTCAAGATATTTACCATG___TTACTGGACCATTATCAGAATTGCAAATAGCCTATGTATGCAGAGAAACCTTACAG___GGTCTTGCCTATTTGCATACTAAAGGCAAAATGCATAGAGATATCAAA___GGTGCTAATATTTTATTGACAGA QSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHAS|gDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHTKGKMHRDIKGANILLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase kinase 5 STE STE20 KHS Q9Y4K4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 9998 SAV1::MAP4K5 ENSG00000151748.15::ENSG00000012983.12 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1766 TRUE 697 SAV1 ENSG00000151748.15 protein_coding - - chr14:50632058-50668306:- chr14:50665179:- chr14:51098776-51135024:- chr14:51131897:- MAP4K5 ENSG00000012983.12 protein_coding - - chr14:50418501-50561126:- chr14:50448832:- chr14:50885219-51027844:- chr14:50915550:- chr14:50655681,chr14:50655688 chr14:50503370,chr14:50503374 NA NA chr14:51122399,chr14:51122406 chr14:50970088,chr14:50970092 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |CNH_domain(100%) |CNH(100%) 1 0 0 257 211 ENST00000324679.5 ENST00000013125.9 upstream downstream none TTTTGATGGTCAGAGAAAGCGGCCACTTGGAGATCGTGCACATGAAGACTACAGATATTATGAATACAACCATGATCTCTTCCAAAGAATGCCACAGAATC...GGGGAGGCATGCTTCAG|TTGACAAATTACAATTTGAACCTCCTCTGAGAAAAGAAACAGAAGCACGAGATGAAATG___GGATTGTCATCAGACCCAAATTTCA GRHAS|vDKLQFEPPLRKETEARDEMGLSSDPNF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase kinase 5 STE STE20 KHS Q9Y4K4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10001 HIF1A::SNAPC1 ENSG00000100644.17::ENSG00000023608.5 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1768 TRUE 698 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61741188:+ chr14:62162231-62214977:+ chr14:62207906:+ SNAPC1 ENSG00000023608.5 protein_coding + + chr14:61762420-61796428:+ chr14:61782247:+ chr14:62229138-62263146:+ chr14:62248965:+ chr14:61741311,chr14:61741312 chr14:61779884,chr14:61779882 NA NA chr14:62208029,chr14:62208030 chr14:62246602,chr14:62246600 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Hypoxia-inducible_factor-1(100%),PAS_fold(100%)| HIF-1(100%),PAS(100%),PAS_11(100%),PAS_3(100%),PAS_9(100%)| 6 13 21 52 141 ENST00000337138.9 ENST00000216294.5 downstream upstream duplicates(3),mismatches(2) TGCTAATGCCACCACTACCACTGCCACCACTGATGAATTAAAAACAGTGACAAAAGACCGTATGGAAGACATTAAAATATTGATTGCATCTCCATCTCCTACCCACATACATAAAGAAACTACTAGTGCCACATCATCACCATATAGAGATACTCAAAGTCGGACAGCCTCACCAAACAGAGCAGGAAAAGGAGTCATAGAACAGACAGAAAAATCTCATCCAAGAAGCCCTAACGTGTTATCTGTCGCTTTGAGTCAAAG|GCATCCAAATCAAGAAGGCATCGTCAAGTCAAACTCGACTCTTCTGACTCTGATTCTGCATCTGGTCAAGGGCAAGTCAAAGCAACTAGGAAAAAAGAGAAGAAAGAAAGATTGAAACCAGCAGGAAGGAAGATGTCTCTCAGAAACAAAG___GCAATGTGCAGAATATACACAAGGAAGATAAACCTTTAAGTCTGAGTATGCCTGTAATTACAGAAGAAGAAGAGAATGAAAGTTTGAGTGGAACAG___AGTTCACTGCATCCAAGAAGAGGAGAAAACACTGAACAAAGAGCCTGGTGTAGTTTTTAATTTTGAGTTTTCTGACAGAA ANATTTTATTDELKTVTKDRMEDIKILIASPSPTHIHKETTSATSSPYRDTQSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQr|hpnqegivksnstlltlilhlvkgkskqlgkkrrkkd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10003 HIF1A::SNAPC1 ENSG00000100644.17::ENSG00000023608.5 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1768 TRUE 698 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61738373:+ chr14:62162231-62214977:+ chr14:62205091:+ SNAPC1 ENSG00000023608.5 protein_coding + + chr14:61762420-61796428:+ chr14:61782247:+ chr14:62229138-62263146:+ chr14:62248965:+ chr14:61741311,chr14:61741312 chr14:61779884,chr14:61779882 NA NA chr14:62208029,chr14:62208030 chr14:62246602,chr14:62246600 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none PAS_fold(100%)| PAS(100%),PAS_11(100%),PAS_3(100%),PAS_9(100%)| 1 0 1 70 141 ENST00000337138.9 ENST00000216294.5 downstream upstream duplicates(1) CTCCATTACCCACCGCTGAAACGCCAAAGCCACTTCGAAGTAGTGCTGACCCTGCACTCAATCAAGAAGTTGCATTAAAATTAGAACCAAATCCAGAGTCACTGGAACTTTCTTTTACCATGCCCCAGATTCAGGATCAGACACCTAGTCCTTCCGATGGAAGCACTAGACAAAGTTCACCTGAG|GCATCCAAATCAAGAAGGCATCGTCAAGTCAAACTCGACTCTTCTGACTCTGATTCTGC PLPTAETPKPLRSSADPALNQEVALKLEPNPESLELSFTMPQIQDQTPSPSDGSTRQSSPE|ASKSRRHRQVKLDSSDSDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10004 HIF1A::ENSG00000258964 ENSG00000100644.17::ENSG00000258964.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61721823:+ chr14:62162231-62214977:+ chr14:62188541:+ ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61766876:+ chr14:62200856-62242978:+ chr14:62233594:+ chr14:61723697,chr14:61723696,chr14:61740572,chr14:61723697 chr14:61758250,chr14:61758255,chr14:61754259,chr14:61758241 NA NA chr14:62190415,chr14:62190414,chr14:62207290,chr14:62190415 chr14:62224968,chr14:62224973,chr14:62220977,chr14:62224959 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none PAS_fold(39%)| PAS(4%),PAS_9(2%)| 7 4 24 167 59 ENST00000337138.9 ENST00000555937.1 downstream upstream duplicates(4),mismappers(1),mismatches(1) GATGAGGCTTACCATCAGCTATTTGCGTGTGAGGAAACTTCTGGATGCTG___GTGATTTGGATATTGAAGATGACATGAAAGCACAGATGAATTGCTTTTATTTGAAAGCCTTGGATGGTTTTGTTATGGTTCTCACAGATGATGGTGACATGATTTACATTTCTGATAATGTGAACAAATACATGGGATTAACTCAG___TTTGAACTAACTGGACACAGTGTGTTTGATTTTACTCATCCATGTGACCATGAGGAAATGAGAGAAATGCTTACACACAGAAATG|TGGCAGAATGAGAAATTTAGAAAAGAACATGTTTACAAAAGAAGCTTTAGCTTTGGCTTGGCGATATTTTTTACCTCCATACACCTTCCAGATCAGAGTTGGTGCTTTGTATCTGCTATATGGATTATATAATACCCAACTGTGTCAACCAAAACAAAAG___ATCAGAGTTGCCCTGAAGGATTGGGATGAAGTTTTAAAATTTCAGCAAGATTTAGTAAATGCACAGCATTTTGATGCAGCTTATATTTTT MRLTISYLRVRKLLDAGDLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRN|vae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10005 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1769 TRUE 699 MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2225410:- chr7:1855429-2272878:- chr7:2265045:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142422329:+ chrX:141022282-141828367:+ chrX:141510115:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Mitotic_checkpoint_protein(6%)| MAD(1%)| 3 1 25 124 4 ENST00000406869.5 unknown upstream upstream duplicates(5),mismatches(4) GGACTGGATATTTCTACCTCGGCCCCAGGTTCTCTGCAGATGCAGTACCAGCAGAGCATGCAG___CTGGAGGAAAGAGCAGAGCAGATCCGTTCGAAGTCCCACCTCATCCAGGTGGAGCGGGAGAAAATGCAGATGGAGCTGAGTCACAAGAGGGCTCGAGTGGAGCTGGAGAGAGCAGCCAGCACCAGTGCCAGGAACTACGAG|GTTGTAAGACTCCCATTCCATAGAGGGTCCTGCCCCATATCCAGAAGGAAGGAGTGCATGCTCAGAGAG---GACAACAACAAGAATCCAGACAGACAAGTACTGCTGAGTTTCCCTGCTCAGTCTATTGACATTAGATTATCCCCTTTT GLDISTSAPGSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYE|vvrlpfhrgscpisrrkecmlrednnknpdrqvllsfpaqsidirlsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10006 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1769 TRUE 699 MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2229984:- chr7:1855429-2272878:- chr7:2269619:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none MAD(0%)| 4 3 8 165 17 ENST00000406869.5 ENST00000664519.1 upstream upstream duplicates(3) ATTACACCATCGGACCCCTGGCTCTGAGGCCTTCAGACTTGGACTGTGTCACACTGCCAGGCTTCCAGGGCTCCAACTTGCAGACGGCCTGTTGTGGGACAGTCTCTGTAATCGC___GAAAGCAACCATGGAAGACCTGGGGGAAAACACCATGGTTTTATCCACCCTGAGATCTTTGAACAACTTCATCTCTCAGCGTGTGGAGGGAGGCTCTGGACTGGATATTTCTACCTCGGCCCCAGGTTCTCTGCAGATGCAGTACCAGCAGAGCATGCAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___CAACATTGTGAGGATTCAGCAAGTCTAGAATTATAATCCC MEDLGENTMVLSTLRSLNNFISQRVEGGSGLDISTSAPGSLQMQYQQSMQ|gtrkviiniyicswg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10007 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1769 TRUE 699 MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2225410:- chr7:1855429-2272878:- chr7:2265045:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Mitotic_checkpoint_protein(6%)| MAD(1%)| 0 1 10 124 17 ENST00000406869.5 ENST00000664519.1 upstream upstream duplicates(1),mismatches(1) TGCAGATGCAGTACCAGCAGAGCATGCAG___CTGGAGGAAAGAGCAGAGCAGATCCGTTCGAAGTCCCACCTCATCCAGGTGGAGCGGGAGAAAATGCAGATGGAGCTGAGTCACAAGAGGGCTCGAGTGGAGCTGGAG...GCCAGCACCAGTGCCAGGAACTACGAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___CAACATTGTGAGGATTCAGCAAGTCTAGAATTATAATCCC ASTSARNYE|gtrkviiniyicswg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10008 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1769 TRUE 699 MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2230549:- chr7:1855429-2272878:- chr7:2270184:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 1 2 151 17 ENST00000265854.12 ENST00000664519.1 upstream upstream none GCGGCGGCAAGCTGGCTGCGAGCGGCTGAG___CAGCACTCCAAGCTCGCCGGCCTTTGGTCTCCAGGACTTGTCCCAGCAGCCCCTCGAACTGAGAATTACACCATCGGACCCCTGGCTCTGAGGCCTTCAGA...CAGGGCTCCAACTTGCAGACGGCCTGTTGTGGGACAGTCTCTGTAATCGC|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAG...CTGGAGTTTGCTGGAGGTCTACTCCAGACACGATTTGCCTGGGTATCACCAGTGGAGGCTGCAGAACAGCAAAGACTTCTGCCTGGTCCTTTCTATGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10009 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1769 TRUE 699 MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2232872:- chr7:1855429-2272878:- chr7:2272507:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 75 17 ENST00000406869.5 ENST00000664519.1 upstream upstream none CAAGCTGGCTGCGAGCGGCTGAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___AGGGTGATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10010 ENSG00000286192::ENSG00000288098 ENSG00000286192.1::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1770 TRUE 700 ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2225410:- chr7:1855440-2281850:- chr7:2265045:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142422329:+ chrX:141022282-141828367:+ chrX:141510115:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 3'UTR/splice-site intron translocation high none none FtsJ(100%),MAD(1%)| 3 1 25 124 4 ENST00000651235.1 unknown upstream upstream duplicates(5),mismatches(4) GGACTGGATATTTCTACCTCGGCCCCAGGTTCTCTGCAGATGCAGTACCAGCAGAGCATGCAG___CTGGAGGAAAGAGCAGAGCAGATCCGTTCGAAGTCCCACCTCATCCAGGTGGAGCGGGAGAAAATGCAGATGGAGCTGAGTCACAAGAGGGCTCGAGTGGAGCTGGAGAGAGCAGCCAGCACCAGTGCCAGGAACTACGAG|GTTGTAAGACTCCCATTCCATAGAGGGTCCTGCCCCATATCCAGAAGGAAGGAGTGCATGCTCAGAGAG---GACAACAACAAGAATCCAGACAGACAAGTACTGCTGAGTTTCCCTGCTCAGTCTATTGACATTAGATTATCCCCTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10011 ENSG00000286192::ENSG00000288098 ENSG00000286192.1::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1770 TRUE 700 ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2229984:- chr7:1855440-2281850:- chr7:2269619:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation high none none FtsJ(100%),MAD(0%)| 4 3 8 165 17 ENST00000651235.1 ENST00000664519.1 upstream upstream duplicates(3) ATTACACCATCGGACCCCTGGCTCTGAGGCCTTCAGACTTGGACTGTGTCACACTGCCAGGCTTCCAGGGCTCCAACTTGCAGACGGCCTGTTGTGGGACAGTCTCTGTAATCGC___GAAAGCAACCATGGAAGACCTGGGGGAAAACACCATGGTTTTATCCACCCTGAGATCTTTGAACAACTTCATCTCTCAGCGTGTGGAGGGAGGCTCTGGACTGGATATTTCTACCTCGGCCCCAGGTTCTCTGCAGATGCAGTACCAGCAGAGCATGCAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___CAACATTGTGAGGATTCAGCAAGTCTAGAATTATAATCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10012 ENSG00000286192::ENSG00000288098 ENSG00000286192.1::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1770 TRUE 700 ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2225410:- chr7:1855440-2281850:- chr7:2265045:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation high none none FtsJ(100%),MAD(1%)| 0 1 10 124 17 ENST00000651235.1 ENST00000664519.1 upstream upstream duplicates(1),mismatches(1) TGCAGATGCAGTACCAGCAGAGCATGCAG___CTGGAGGAAAGAGCAGAGCAGATCCGTTCGAAGTCCCACCTCATCCAGGTGGAGCGGGAGAAAATGCAGATGGAGCTGAGTCACAAGAGGGCTCGAGTGGAGCTGGAG...GCCAGCACCAGTGCCAGGAACTACGAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___CAACATTGTGAGGATTCAGCAAGTCTAGAATTATAATCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10013 ENSG00000286192::ENSG00000288098 ENSG00000286192.1::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1770 TRUE 700 ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2230549:- chr7:1855440-2281850:- chr7:2270184:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation high none none FtsJ(100%)| 0 1 2 151 17 ENST00000651235.1 ENST00000664519.1 upstream upstream none GCGGCGGCAAGCTGGCTGCGAGCGGCTGAG___CAGCACTCCAAGCTCGCCGGCCTTTGGTCTCCAGGACTTGTCCCAGCAGCCCCTCGAACTGAGAATTACACCATCGGACCCCTGGCTCTGAGGCCTTCAGA...CAGGGCTCCAACTTGCAGACGGCCTGTTGTGGGACAGTCTCTGTAATCGC|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAG...CTGGAGTTTGCTGGAGGTCTACTCCAGACACGATTTGCCTGGGTATCACCAGTGGAGGCTGCAGAACAGCAAAGACTTCTGCCTGGTCCTTTCTATGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10014 ENSG00000286192::ENSG00000288098 ENSG00000286192.1::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1770 TRUE 700 ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:2232872:- chr7:1855440-2281850:- chr7:2272507:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation low none none FtsJ(100%)| 0 1 0 75 17 ENST00000651235.1 ENST00000664519.1 upstream upstream none CAAGCTGGCTGCGAGCGGCTGAG|GGTACAAGAAAGGTGATTATAAACATTTACATTTGTAGTTGGGGATGAAAGATTTGAACTGTGCCTACCAGAGGGTCCTGATCTGAAAAG___AGGGTGATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10015 FRS2::HECTD4 ENSG00000166225.9::ENSG00000173064.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1015 TRUE 1771 TRUE 701 FRS2 ENSG00000166225.9 protein_coding + + chr12:69470349-69579793:+ chr12:69532056:+ chr12:69864129-69973573:+ chr12:69925836:+ HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112219489:- chr12:112597992-112820243:- chr12:112657293:- chr12:69554573,chr12:69554574 chr12:112221062,chr12:112221061 NA NA chr12:69948353,chr12:69948354 chr12:112658866,chr12:112658865 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |HECT-domain_(ubiquitin-transferase)(100%) |HECT(100%) 11 1 14 117 67 ENST00000549921.6 ENST00000377560.9 downstream downstream mismatches(4) GCGGGTCGGAGTCTGGGGGTTCGCGCCCGCCGACCCGCGCCCTGCTCCCTCTCAGCACCTGGGCGGACG___AAATGACCATTAAGAAGTAGATGCCCAGATGCAAAAGTGATGAAACAGTCCATTTGTCATAAAGTAAGATGCAGCTGTGGCATGTCAACCAGCTTG___GAACAAAATTGTATCTGTTTTTCTCAGAAGAGAATTCCACAAG|GAGAGCGACTTGCAGTTGTGGAGGTACAGTGTGAACGGCTGAGGATGCTCTACCGGGACTGTGCTCGGCCCCCACCACCTCCTTTGCAGGCTGACCGAAGACAG___CCCAAAGAGATTACTTGGAGCCCCTCGCGAGTGTTTCCGCCTGTTCGAGCCTGCATGTTCTCATCTCACC...GGGGAGGCCTGCCCCGGGGCACTTTTATCTATGCCACTTCACCACTGCCAGTTCAG___GCCCCGTCTTTTTACTGGGAAATTGAAATCGTTTCCTATGGAGACACCGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6861 chr12:112163258-112163321:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10016 FRS2::HECTD4 ENSG00000166225.9::ENSG00000173064.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1016 TRUE 1771 TRUE 701 FRS2 ENSG00000166225.9 protein_coding + + chr12:69470349-69579793:+ chr12:69537983:+ chr12:69864129-69973573:+ chr12:69931763:+ HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112219489:- chr12:112597992-112820243:- chr12:112657293:- chr12:69554573,chr12:69554574 chr12:112221062,chr12:112221061 NA NA chr12:69948353,chr12:69948354 chr12:112658866,chr12:112658865 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |HECT-domain_(ubiquitin-transferase)(100%) |HECT(100%) 7 1 17 18 67 ENST00000550937.5 ENST00000377560.9 downstream downstream mismatches(3) GGCCTTGTAGGCACAGCGGCTGAGACTCGATCTGCTCCAAGTAGGGGCTCCAGCGCGGGTCGGAGTCTGGGGGTTCGCGCCCGCCGACCCGCGCCCTGCTCCCTCTCcGCACCTGGGCGGACG...CAGATGCAAAAGTGATGAAACAGTCCATTTGTCATAAAGTAAGATGCAGCTGTGGCATGTCAACCAGCTTG___GAACAAAATTGTATCTGTTTTTCTCAGAAGAGAATTCCACAAG___GAGATTTTCTTCTTTCTACCATCATCAAGATCAAGCAGGCAAGTTTACTTGCTGTCATCTTCTaCAAG|GAGAGCGACTTGCAGTTGTGGAGGTACAGTGTGAACGGCTGAGGATGCTCTACCGGGACTGTGCTCGGCCCCCACCACCTCCTTTGCAGGCTGACCGAAGACAG___CCCAAAGAGATTACTTGGAGCCCCTCGCGAGTGTTTCCGCCTGTTCGAGCCTGCATGTTCTCATCTCACCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6861 chr12:112163258-112163321:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10022 WBP1L::BORCS7-ASMT ENSG00000166272.18::ENSG00000270316.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1774 TRUE 702 WBP1L ENSG00000166272.18 protein_coding + + chr10:102743948-102834516:+ chr10:102744143:+ chr10:104503705-104594273:+ chr10:104503900:+ BORCS7-ASMT ENSG00000270316.1 protein_coding + + chr10:102854272-102901899:+ chr10:102869805:+ chr10:104614029-104661656:+ chr10:104629562:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none |Methyltransf_11(100%),Methyltransf_12(100%),Methyltransf_23(100%),Methyltransf_25(100%),Methyltransf_31(100%),Methyltransf_8(100%),PCMT(100%),Ubie_methyltran(100%) 1 4 9 63 24 ENST00000647664.1 ENST00000299353.6 downstream upstream duplicates(4) GGGTAGAGGAGGAGAGGGAGGAGGAGGAGGGAGGTGGCGGCGCCGTGGCGGAGGAGCAGGAGCAGGAGGGGGATGGAGAGGAGAAGGCTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCCAGCCCCTTGTCAGCCAGGGCTGAACCCCCGCAG|TGGCTGCACTTCGTGACGCTGAGATACAGAAGGACGTGCAG___ATATTATGGCTGTGGTCTGGTGATCCCTGAGCATCTAGAAAACT...ACTTAGCCAGCTGGTTGGTGAAAAAGGACACGTGACTGGAATAGACATGACCAAAGGCCAG___GTGGAAGTGGCTGAAAAGTATCTTGACTATCACATGGAAAAATATGGCTTCCAGGCATCTAATGTGACTTTTATT MERRRLLGGMALLLLQALPSPLSARAEPPQ|wlhfvtlryrrtcryygcglvipehlen NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10023 WBP1L::BORCS7-ASMT ENSG00000166272.18::ENSG00000270316.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1774 TRUE 702 WBP1L ENSG00000166272.18 protein_coding + + chr10:102743948-102834516:+ chr10:102744143:+ chr10:104503705-104594273:+ chr10:104503900:+ BORCS7-ASMT ENSG00000270316.1 protein_coding + + chr10:102854272-102901899:+ chr10:102872448:+ chr10:104614029-104661656:+ chr10:104632205:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none |Methyltransf_11(100%),Methyltransf_12(100%),Methyltransf_23(100%),Methyltransf_25(100%),Methyltransf_31(100%),Methyltransf_8(100%),PCMT(100%),Ubie_methyltran(100%) 1 4 7 63 38 ENST00000448841.7 ENST00000299353.6 downstream upstream duplicates(7) AGGGTAGAGGAGGAGAGGGAGGAGGAGGAGGGAGGTGGCGGCGCCGTGGCGGAGGAGCAGGAGCAGGAGGGGGATGGAGAGGAGAAGGCTCCTGGGTGGCATGGCGCTCCTGCTCCTCCAGGCGCTGCCCAGCCCCTTGTCAGCCAGGGCTGAACCCCCGCAG|ATATTATGGCTGTGGTCTGGTGATCCCTGAGCATCTAGAAAACTGCTGGATTTTGGATCTGGGTAGTGGAAGTGGCAGAGATTGCTATGTACTTAGCCAGCTGGTTGGTGAAAAAGGACACGTGACTGGAATAGACATGACCAAAGGCCAG___GTGGAAGTGGCTGAAAAGTATCTTGACTATCACATGGAAAAATATGGCTTCCAGGCATCTAATGTGACTTTTATTCATGGCTACATTGAGAAGTTGG...TATTGTTGT___ATCAAACTGTGTTATTAACCTTGTGCCTGATAAACAACAAGTGCTTCAGGAGGCATATCGGGTGCTGAAG___CATGGTGGGGAGTTATATTTCAGTGACGTCTATACGAGCCTTGAACTGCCAGAAGAAATCAGGACACACAAAGTTTTATGGG___GTGAGTGTCTGGGTGGTGCTTTATA MERRRLLGGMALLLLQALPSPLSARAEPPQ|ilwlwsgdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10045 HIF1A::ENSG00000258964 ENSG00000100644.17::ENSG00000258964.1 769P SRR8615643 SRR8639134 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1776 TRUE 703 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61766876:+ chr14:62200856-62242978:+ chr14:62233594:+ chr14:61699347,chr14:61699349,chr14:61699373,chr14:61699379,chr14:61699390 chr14:61753589,chr14:61753589,chr14:61753589,chr14:61753589,chr14:61753589 NA NA chr14:62166065,chr14:62166067,chr14:62166091,chr14:62166097,chr14:62166108 chr14:62220307,chr14:62220307,chr14:62220307,chr14:62220307,chr14:62220307 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none none none 142 137 120 573 498 ENST00000337138.9 ENST00000555937.1 downstream upstream duplicates(36),low_entropy(2),mismappers(10),mismatches(83) GGATCACCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATTGCCGCCCGCTTCTCTCTAGTCTCACGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGACTTGCCTTTCCTTCTCTTCTCCGCGTGTGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCCGCCGTGAAGACATCGCGGGGACCGATTCACCATGGAGGGCGCCGGCGGCGCGAACGACAAGAAAAA|TGGCAGAATGAGAAATTTAGAAAAGAACATGTTTACAAAAGAAGCTTTAGCTTTGGCTTGGCGATATTTTTTACCTCCATACACCTTCCAGATCAGAGTTGGTGCTTTGTATCTGCTATATGGATTATATAATACCCAACTGTGTCAACCAAAACAAAAG___ATCAGAGTTGCCCTGAAGGATTGGGATGAAGTTTTAAAATTTCAGCAAG MEGAGGANDKKn|grmrnleknmftkealalawryflppytfqirvgalyllyglyntqlcqpkqkirvalkdwdevlkfqq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10046 HIF1A::ENSG00000258964 ENSG00000100644.17::ENSG00000258964.1 769P SRR8615643 SRR8639134 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1776 TRUE 703 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61767212:+ chr14:62200856-62242978:+ chr14:62233930:+ chr14:61699347,chr14:61699349,chr14:61699373,chr14:61699379,chr14:61699390 chr14:61753589,chr14:61753589,chr14:61753589,chr14:61753589,chr14:61753589 NA NA chr14:62166065,chr14:62166067,chr14:62166091,chr14:62166097,chr14:62166108 chr14:62220307,chr14:62220307,chr14:62220307,chr14:62220307,chr14:62220307 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 0 1 28 573 417 ENST00000337138.9 ENST00000555937.1 downstream upstream duplicates(1),mismatches(15) GGATCACCCTCTTCGTCGCTTCGGCCAGTGTGTCGGGCTGGGCCCTGACAAGCCACCTGAGGAGAGGCTCGGAGCCGGGCCCGGACCCCGGCGATTGCCGCCCGCTTCTCTCTAGTCTCACGAGGGGTTTCCCGCCTCGCACCCCCACCTCTGGACTTGCCTTTCCTTCTCTTCTCCGCGTGTGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCCGCCGTGAAGACATCGCGGGGACCGATTCACCATGGAGGGCGCCGGCGGCGCGAACGACAAGAAAAA|ATCAGAGTTGCCCTGAAGGATTGGGATGAAGTTTTAAAATTTCAGCAAGATTTAGTAAATGCACAGCATTTTGATGCAGCTTATATTTTTAGGAAGCTACGACTAGACAGAGCATTTCACTTTACAGCAATGCCCAAATTG___CTGTCATATAGGATGAAGAAAAAAATTCACCGAGCTGAAGTTACAGAAGAATTTAAG MEGAGGANDKKk|selp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10053 ZBTB7A::EEF2 ENSG00000178951.9::ENSG00000167658.16 769P SRR8615643 SRR8639134 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1779 FALSE NA ZBTB7A ENSG00000178951.9 protein_coding - - chr19:4043303-4066899:- chr19:4053971:- chr19:4043301-4066897:- chr19:4053969:- EEF2 ENSG00000167658.16 protein_coding - - chr19:3976056-3985463:- chr19:3979436:- chr19:3976054-3985461:- chr19:3979434:- chr19:4053208,chr19:4053212 chr19:3980046,chr19:3980047 NA NA chr19:4053206,chr19:4053210 chr19:3980044,chr19:3980045 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none BTB/POZ_domain(100%),Zinc_finger__C2H2_type(25%)|Elongation_Factor_G__domain_III(46%),Elongation_factor_G_C-terminus(100%),Elongation_factor_G__domain_IV(100%) BTB(100%),zf-C2H2(0%),zf-C2H2_6(0%)|EFG_C(100%),EFG_III(15%),EFG_IV(100%) 19 13 13 200 5676 ENST00000322357.9 ENST00000309311.7 upstream downstream duplicates(1),low_entropy(3),mismatches(7) CAAGGGCGTCATGGACTACTACCTGAAGTACTTCAGCGGCGCCCACGACGGCGACGTCTACCCGGCCTGGTCGCAGAAGGTGGAGAAGAAGATCCGAGCCAAGGCCTTCCAGAAGTGCCCCATCTGCGAGAAGGTCATCCAGGGCGCCGGCAAGCTGCCGCGACACATCCGCACCCACACGGGCGAGAAGCCCTACGAGTGCAACATCTGCAAGGTCCGCTTCACCAG|TGCATCATCGAGGAGTCGGGAGAGCATATCATCGCGGGCGCCGGCGAGCTGCACCTGGAGATCTGCCTGAAGGACCTGGAGGAGGACCACGCCTGCATCCCCATCAAG___AAATCTGACCCGGTCGTCTCGTACCGCGAGACGGTCAGTGAAGAGTCGAACGTGCTCTGCCTCTCCAAGTCCCCCAACAAGCACAACCGGCT KGVMDYYLKYFSGAHDGDVYPAWSQKVEKKIRAKAFQKCPICEKVIQGAGKLPRHIRTHTGEKPYECNICKVRFTs|assrsresissrapasctwrsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10056 ETF1::SPOCK1 ENSG00000120705.13::ENSG00000152377.15 769P SRR8615643 SRR8639134 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ETF1 ENSG00000120705.13 protein_coding - - chr5:138506095-138543236:- chr5:138542833:- chr5:137841784-137878925:- chr5:137878522:- SPOCK1 ENSG00000152377.15 protein_coding - + chr5:136975298-137598379:- chr5:137360715:+ chr5:136310987-136934068:- chr5:136696404:+ chr5:138527953,chr5:138527964 chr5:137346534,chr5:137346523 NA NA chr5:137863642,chr5:137863653 chr5:136682223,chr5:136682212 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none eRF1_domain_1(9%)| eRF1_1(0%)| 3 4 3 1143 20 ENST00000360541.10 unknown upstream upstream mismatches(1) GGGAGCCGGTGTCCTACGTCAGAGCCGCCGCCGCCGCGGAGCCGCCGCCGGGGAGGAGCAGCCGCTGCCGCCCAGGACTGGGCCCTTAG___GGAGGAGGAGGCGAGAAGATGGCGGACGACCCCAGTGCTGCCGACAGGAACGTGGAGATCTGGAAGATCAAGAAGCTCATTAAGAGCTTGGAGGCGGCCCGCGG|GTGCACATTTCTCAGAAGACTGTCTACCATCCCAAAGAAAGCTGGTAGATCAGGGTTTCTCAAACTTCCTCCAAAGAGATGACTCAGAGACTGGG MADDPSAADRNVEIWKIKKLIKSLEAARg|ctflrrlstipkkagrsgflklppkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10071 AHCY::ENSG00000253642 ENSG00000101444.13::ENSG00000253642.6 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHCY ENSG00000101444.13 protein_coding - - chr20:34280268-34311802:- chr20:34303243:- chr20:32868074-32899608:- chr20:32891049:- ENSG00000253642 ENSG00000253642.6 lncRNA + - chr8:33604856-34039104:+ chr8:33717428:- chr8:33462374-33896622:+ chr8:33574946:- chr20:34283686,chr20:34283688 chr8:33718224,chr8:33718223 NA NA chr20:32871492,chr20:32871494 chr8:33575742,chr8:33575741 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none S-adenosyl-L-homocysteine_hydrolase(2%)| AdoHcyase(0%)| 300 302 104 3244 2557 ENST00000217426.7 unknown upstream downstream duplicates(156),inconsistently_clipped(14),low_entropy(6),mismatches(51) CTGCCCGCCCAGTTCCTGTTCCCAGACTGAGGCCCAGCCCCCTTCGCCCGTTTCCATCACGAGTGCCGCCAGCATGTCTGACAAACTGCCCTACAAAGTCG|GTGAAGCCCAGACAGCAGAGAAATTTCTCACCTGAGCAGAGAGGAATCAACAGAGAGGAAAGTG___ATTTAGGAAGATATTATCTTACAATTGCCAGAGGTCTCACATGAAGCCTGTGGATGAAGCTGACTATAAAACCAAGAGATAGGGCCAGGTGCAGTGGCTCACACCTGCAATTTCAGCACTTTGG MSDKLPYKV|geaqtaekflt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10074 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 4 4 8 929 125 ENST00000506640.3 unknown upstream downstream mismatches(2),multimappers(2) CGCAGATGAGCCTACTGCCTCACAACAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTCCCAGCCTTCTCTCCAG...GTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGATTCCTTCAACCGTCACTGAGCCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10075 PTBP3::ATP6V1C1 ENSG00000119314.16::ENSG00000155097.12 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTBP3 ENSG00000119314.16 protein_coding - - chr9:112217716-112333664:- chr9:112330441:- chr9:114979996-115095944:- chr9:115092721:- ATP6V1C1 ENSG00000155097.12 protein_coding + - chr8:103021063-103073051:+ chr8:103031437:- chr8:104033291-104085279:+ chr8:104043665:- chr9:112324865 chr8:103036998 NA NA chr9:115087145 chr8:104049226 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 6 3 2 11 12 ENST00000334318.10 unknown upstream downstream none GGCCGGGGCTCCGCAGAGCCAAAGCTCGCTTGTCCCCGGAACCGCCCTGCTGCCGCCGCCTGCTTCCTCTGCTCGCGGTTAGCCCGTCAGTCCCTGCTCTGTGCGCGCCTCCATCTGGGCCATGGATGG___TGTTGTTACAGATCTTATAACAGTCGGTTTAAAG|AGCTTCCTGAAGCCTCATGAGAAGCTGAGATCCGGATGCCATGCTTGCACAGCCTACAGAACT___GGATTCAGCCACAACCTCACAGCCTC MDGVVTDLITVGLK|sflkpheklrsgchactayrtgfshnlta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10077 SAMD5::SASH1 ENSG00000203727.4::ENSG00000111961.19 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SAMD5 ENSG00000203727.4 protein_coding + + chr6:147508690-147737547:+ chr6:147509387:+ chr6:147829826-148058683:+ chr6:147830523:+ SASH1 ENSG00000111961.19 protein_coding + + chr6:148272304-148552044:+ chr6:148514324:+ chr6:148593440-148873180:+ chr6:148835460:+ chr6:147590723,chr6:147590721 chr6:148511769,chr6:148511764 NA NA chr6:147911859,chr6:147911857 chr6:148832905,chr6:148832900 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none SAM_domain_(Sterile_alpha_motif)(100%)|Lymphocyte_signaling_adaptor_protein(100%),SAM_domain_(Sterile_alpha_motif)(100%),Variant_SH3_domain(100%) SAM_1(100%),SAM_2(100%)|SAM_1(100%),SAM_2(100%),SH3_2(100%),SLY(100%) 1 5 1 90 51 ENST00000367474.2 ENST00000367467.8 downstream upstream none CGAgaGtCCCCCGCAGCAGGGAGCTGGTGAGCTACCCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGTCCGTGACGGCATCCACCTGAGCAAGCCCCCGTACTCCCGCAAG|TCAAGAGAACAATCGGATGATGAGACTGAGGAGTCGGTGAAGTTTAAGAGGTTACACAAGCTGGTAAACTCCACTCGCAGAGTCAGAAAGAAACTAATTAGGGTGGAAGAAATGAAAAAACCCAGCACTGAAG___GTGGGGAGGAGCACGTGTTTGAGAATTCGCCGGTCCTGGATGAACGGTCCGCCCTCTACTCTGGCGTGCACAAGAAGCCCCTTTTCTTTGATGGCTCTCCTGAGAAACCTCCCGAAGATGAC rvPRSRELVSYPKLKLKIMIRDKLVRDGIHLSKPPYSRK|SREQSDDETEESVKFKRLHKLVNSTRRVRKKLIRVEEMKKPSTEGGEEHVFENSPVLDERSALYSGVHKKPLFFDGSPEKPPED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10083 ITCH::MAK16 ENSG00000078747.17::ENSG00000198042.11 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE TRUE 1023 TRUE 1783 FALSE NA ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34369470:+ chr20:32951041-33099578:+ chr20:32957276:+ MAK16 ENSG00000198042.11 protein_coding + + chr8:33485182-33501262:+ chr8:33496625:+ chr8:33342700-33358780:+ chr8:33354143:+ chr20:34468715 chr8:33495857 NA NA chr20:33056520 chr8:33353375 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Mak16_protein_C-terminal_region(62%) |Mak16(22%) 2 7 4 5045 3574 ENST00000374864.10 ENST00000360128.11 downstream upstream none ACCGGCTGCCATCTTAGTCTAGGGACTGAGGAGTCGCCGCCGCCCCGAGTCCCG___GTACCATGCATTTCACaGTGGCCTTGTGGAGACAACGCCTTAACCCAAGGAAGTGACTCAAACTGTGAGAACTTCAG|TATGGCGACATCTACAACTTCCCCATTCATGCCTTCGACAAAGCCCTGGAACAACAGGAGGCAGAGAGTGACTCTTCAGATACTGAGGAAAAAGATGATGATGATGATGATGAGGAA___GATGTGGGGAAAAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGACATAAGTGATTTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10086 ENSG00000289720::MAK16 ENSG00000289720.1::ENSG00000198042.11 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1784 FALSE NA ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34369470:+ chr20:32951077-33128727:+ chr20:32957276:+ MAK16 ENSG00000198042.11 protein_coding + + chr8:33485182-33501262:+ chr8:33496625:+ chr8:33342700-33358780:+ chr8:33354143:+ chr20:34468715 chr8:33495857 NA NA chr20:33056520 chr8:33353375 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Mak16_protein_C-terminal_region(62%) |Mak16(22%) 2 7 4 5045 3574 ENST00000696979.1 ENST00000360128.11 downstream upstream none ACCGGCTGCCATCTTAGTCTAGGGACTGAGGAGTCGCCGCCGCCCCGAGTCCCG___GTACCATGCATTTCACaGTGGCCTTGTGGAGACAACGCCTTAACCCAAGGAAGTGACTCAAACTGTGAGAACTTCAG|TATGGCGACATCTACAACTTCCCCATTCATGCCTTCGACAAAGCCCTGGAACAACAGGAGGCAGAGAGTGACTCTTCAGATACTGAGGAAAAAGATGATGATGATGATGATGAGGAA___GATGTGGGGAAAAGAGAATTTGTCGAAGATGGTGAGGTAGATGAGAGTGACATAAGTGATTTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10093 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' medium none none none 1 2 2 929 12 ENST00000506640.3 unknown upstream downstream none CCGAGAACTTTCTCCAGTCAGCCTCTACAGACCAAGCTCATGACTCACAATGGCCTATTTAGGCCCATACCCTACGTCACGGCAGCCTCCGCAGATGAGCC...GTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCC...CCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGCCACACTGGTTCCTGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10097 ITCH::FUT10 ENSG00000078747.17::ENSG00000172728.16 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1785 TRUE 704 ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34462221:+ chr20:32951041-33099578:+ chr20:33050026:+ FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33461725:- chr8:33228342-33330664:- chr8:33319243:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none C2_domain(100%),WW_domain(100%)|Fucosyltransferase__N-terminal(100%),Glycosyltransferase_family_10_(fucosyltransferase)_C-term(100%) C2(100%),WW(100%)|Glyco_tran_10_N(100%),Glyco_transf_10(100%) 1 0 2 3982 896 ENST00000374864.10 ENST00000327671.10 downstream downstream none AACAGACAGCAATGGCAGAGTATATTTCGTCAACCACAACACACGAATTACACAATGGGAAGACCCCAGAAGTCAAGG___TCAATTAAATGAAAAGCCCTTAC...GACCACAATAGAAGAACTACCACCTATATAGATCCCCGCACAGGAAAATCTGCCCT|AATTTTTTTGATTCCTTCTTATTTGGAGAAATCTCCAGCTGCTCT...TCTCAGTCCTTCATGGAGACCTGGTCCCAGCAGGAATGGCAGTGCAGGAAATTGGCGCCCAGATGGTTCTTCCATGTGAAGTTGTCTCGGGCTCTGGGC DHNRRTTTYIDPRTGKSAl|iflipsylekspaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10098 ITCH::FUT10 ENSG00000078747.17::ENSG00000172728.16 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1785 TRUE 704 ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34424525:+ chr20:32951041-33099578:+ chr20:33012331:+ FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33372804:- chr8:33228342-33330664:- chr8:33230322:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none C2_domain(100%)| C2(100%)| 1 0 0 3615 531 ENST00000374864.10 ENST00000327671.10 downstream downstream none TTGGGAACTGCTGCATTAGATATTTATGAAACATTAAAGTCAAACAATATGAAAC___TTGAAGAAGTAGTTGTGACTTTGCAGCTTGGAGGTGACAAAGAGCC...TGGCTCCAGATCCAAGGATGAAACAAG|GGCTTACCACCCAAAAGATGGGAGGCAGAAGATACCCACCTGAGTTGCCCAGAGCCCACAGTGTTTGCTTTCTC GSRSKDETr|ayhpkdgrqkipt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10100 ENSG00000289720::FUT10 ENSG00000289720.1::ENSG00000172728.16 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1786 TRUE 705 ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34462221:+ chr20:32951077-33128727:+ chr20:33050026:+ FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33461725:- chr8:33228342-33330664:- chr8:33319243:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |Fucosyltransferase__N-terminal(100%),Glycosyltransferase_family_10_(fucosyltransferase)_C-term(100%) C2(100%),WW(100%)|Glyco_tran_10_N(100%),Glyco_transf_10(100%) 1 0 2 3982 896 ENST00000696979.1 ENST00000327671.10 downstream downstream none AACAGACAGCAATGGCAGAGTATATTTCGTCAACCACAACACACGAATTACACAATGGGAAGACCCCAGAAGTCAAGG___TCAATTAAATGAAAAGCCCTTAC...GACCACAATAGAAGAACTACCACCTATATAGATCCCCGCACAGGAAAATCTGCCCT|AATTTTTTTGATTCCTTCTTATTTGGAGAAATCTCCAGCTGCTCT...TCTCAGTCCTTCATGGAGACCTGGTCCCAGCAGGAATGGCAGTGCAGGAAATTGGCGCCCAGATGGTTCTTCCATGTGAAGTTGTCTCGGGCTCTGGGC DHNRRTTTYIDPRTGKSAl|iflipsylekspaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10101 ENSG00000289720::FUT10 ENSG00000289720.1::ENSG00000172728.16 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1786 TRUE 705 ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34424525:+ chr20:32951077-33128727:+ chr20:33012331:+ FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33372804:- chr8:33228342-33330664:- chr8:33230322:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none none C2(100%)| 1 0 0 3615 531 ENST00000696979.1 ENST00000327671.10 downstream downstream none TTGGGAACTGCTGCATTAGATATTTATGAAACATTAAAGTCAAACAATATGAAAC___TTGAAGAAGTAGTTGTGACTTTGCAGCTTGGAGGTGACAAAGAGCC...TGGCTCCAGATCCAAGGATGAAACAAG|GGCTTACCACCCAAAAGATGGGAGGCAGAAGATACCCACCTGAGTTGCCCAGAGCCCACAGTGTTTGCTTTCTC GSRSKDETr|ayhpkdgrqkipt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10102 FUT10::ENSG00000289720 ENSG00000172728.16::ENSG00000289720.1 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33473064:- chr8:33228342-33330664:- chr8:33330582:- ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34526268:+ chr20:32951077-33128727:+ chr20:33114073:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site translocation low none none |Robl_LC7(100%) 0 1 0 544 65535 ENST00000327671.10 ENST00000696980.1 upstream upstream none CTGCGCTGCgTTCTGCGGGACGAACCCTGCTCCGCGCGAG|GCAGAGGTGGAGGAGACACTGAAGCGACTGCAGAGCCAGAAGGGAGTGCAGGGAATCATCG...GCTTCATCCTGAAGGCACGGAGCACCGTGCGTGACATCGACCCCCAGAACGATCTCACCTTCCTTCGAATTCGCTCCAAGAAAAATGAAATTATGGTTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10105 ENSG00000289720::ENSG00000254194 ENSG00000289720.1::ENSG00000254194.5 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1788 FALSE NA ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34408792:+ chr20:32951077-33128727:+ chr20:32996598:+ ENSG00000254194 ENSG00000254194.5 lncRNA - - chr8:33973701-34009595:- chr8:33975543:- chr8:33831219-33867113:- chr8:33833061:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none C2(79%)| 1 1 0 4189 5 ENST00000696979.1 ENST00000521714.1 downstream downstream duplicates(1) GTCCTTACGTAGAGGTCACAGTAGATGGACAGTCAAAGAAGACAGAAAAATGCAACAACACAAACAGTCCCAAGTGGAAGCAACCCCTTACAGT|AATGCATGCGATTTGTTAATCATGATGGAGATCTCAGATGCTTTTGAAG___AGGCTGAACTGATATGAGAAAGTCTTAACCA...TGGAAAAAGCAAGAAAATGAATTCTCCACTAAAGCATCCAGAAACACAGCTCTAAAGATCCCCAGTTTTAGTCCAGTATGACCCATGTTGGACTTCTAAAC PYVEVTVDGQSKKTEKCNNTNSPKWKQPLTv|mhaic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10128 RNF122::PIGU ENSG00000133874.2::ENSG00000101464.11 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RNF122 ENSG00000133874.2 protein_coding - - chr8:33547754-33567128:- chr8:33566699:- chr8:33405272-33424646:- chr8:33424217:- PIGU ENSG00000101464.11 protein_coding - - chr20:34560542-34698790:- chr20:34588607:- chr20:33148346-33286594:- chr20:33176411:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |GPI_transamidase_subunit_PIG-U(48%) |PIG-U(13%) 0 2 0 673 326 ENST00000256257.2 ENST00000217446.8 upstream downstream none CCCGCCTGCGTCCGTTCGCCCGAGGAAGCCAACCGCGACTTCATTGATGCACCCATTCCAGTGGTGTAACG|CGGCAGTACATACCTGTGAAAATGAAGAGCAAAGCCTTCTGGATCTTTTCTTGGGAGTATGCCATGATGTATGTGGGAAGCCTAGTGGTAATCATTTGCCTCTCCTTCTTCCTTCTCAGCTCTTGGGATTTCATCCCCG...ATCTTTGTCCTCACCTGCATCATCATCGTCTGTTCCCTGCTCTTCCCTGTCCTGTGGCACCTCTGGATTTATGCAGGAAGTGCCAACTCTAATTTCTTT MHPFQWCN|aavhtceneeqslldlflgvchdvcgkpsgnhlplllpsqllgfhp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10143 EXOC2::LINC00240 ENSG00000112685.14::ENSG00000224843.8 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1796 TRUE 706 EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:689139:- chr6:485154-693139:- chr6:689139:- LINC00240 ENSG00000224843.8 lncRNA + + chr6:26956932-27059749:+ chr6:27058696:+ chr6:26924711-27027528:+ chr6:27026475:+ chr6:680843 chr6:27009904 NA NA chr6:680843 chr6:26977683 NA NA sense sense unknown 5'UTR/splice-site intron inversion high none none none 2 1 1 79 2 ENST00000443083.5 unknown upstream upstream none CGGCCGCGGAGTCTTCGGCGAGACCTACCGGGCCCTGTCTGTGCCGGCCGTGAGCTGCGGCAGGACGGCTGGAG___TAAATCTTGGTGCCAATAATGGAACGAACACTGGACACAGGACTGGGGAAGACTGGATTTCAGCTTAGGAGAAG|CAGAGGAAGAGGAGCGACTGAAGAAGAAAGAGGGTGGAGGTGAAGATGTGGAGCTCATATTGAATCTTTGGAAAAGTGAAAATGGCTTTTAGTATCCAGTAAGAAGAGTAAATAGAAGAATTTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10144 EXOC2::LINC00240 ENSG00000112685.14::ENSG00000224843.8 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1796 TRUE 706 EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:689139:- chr6:485154-693139:- chr6:689139:- LINC00240 ENSG00000224843.8 lncRNA + + chr6:26956932-27059749:+ chr6:27023254:+ chr6:26924711-27027528:+ chr6:26991033:+ chr6:680843 chr6:27009904 NA NA chr6:680843 chr6:26977683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 2 1 79 23 ENST00000443083.5 ENST00000669756.1 upstream upstream none CCGGCCGTGAGCTGCGGCAGGACGGCTGGAG___TAAATCTTGGTGCCAATAATGGAACGAACACTGGACACAGGACTGGGGAAGACTGGATTTCAGCTTAGGAGAAG|GAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAGCTAACCACATGGAAAGACATGGAGAGATATTC...AAAAAGCCATCTCATACCTTACAACTCTAGCAGATGCCACATAGTGTAGAGATAAGCTCTCTCTGTCATTCTCTGTCAAAATTGTAAAATCATAAGCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10145 EXOC2::LINC00240 ENSG00000112685.14::ENSG00000224843.8 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1796 TRUE 706 EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:693019:- chr6:485154-693139:- chr6:693019:- LINC00240 ENSG00000224843.8 lncRNA + + chr6:26956932-27059749:+ chr6:27023254:+ chr6:26924711-27027528:+ chr6:26991033:+ chr6:680843 chr6:27009904 NA NA chr6:680843 chr6:26977683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 2 0 195 23 ENST00000230449.9 ENST00000669756.1 upstream upstream duplicates(1) CCGGCGGCTGGCGGCCGCGGAGTCTTCGGCGAGACCTACCGGGCCCTGTCTGTGCCGGCCGTGAGCTGCGGCAGGACGGCTGGAG|GAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAGCTAACCACATGGAAAGACATGGAGAGATATTCCTTGCCAACCCTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10146 EXOC2::LINC00240 ENSG00000112685.14::ENSG00000224843.8 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1796 TRUE 706 EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:689139:- chr6:485154-693139:- chr6:689139:- LINC00240 ENSG00000224843.8 lncRNA + + chr6:26956932-27059749:+ chr6:27023209:+ chr6:26924711-27027528:+ chr6:26990988:+ chr6:680843 chr6:27009904 NA NA chr6:680843 chr6:26977683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 0 1 1 79 9 ENST00000443083.5 ENST00000606878.2 upstream upstream none CCGGCCGTGAGCTGCGGCAGGACGGCTGGAG___TAAATCTTGGTGCCAATAATGGAACGAACACTGGACACAGGACTGGGGAAGACTGGATTTCAGCTTAGGAGAAG|CCCAGGCAGTAAGAAAACATATCAGCTTCCACTTTTACCTTTAAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAGCTAACCACATGGAAAGACATGGAGAGATATTCCTTGCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10147 EXOC2::LINC00240 ENSG00000112685.14::ENSG00000224843.8 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1796 TRUE 706 EXOC2 ENSG00000112685.14 protein_coding - - chr6:485154-693139:- chr6:693019:- chr6:485154-693139:- chr6:693019:- LINC00240 ENSG00000224843.8 lncRNA + + chr6:26956932-27059749:+ chr6:27023209:+ chr6:26924711-27027528:+ chr6:26990988:+ chr6:680843 chr6:27009904 NA NA chr6:680843 chr6:26977683 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 2 0 195 9 ENST00000230449.9 ENST00000606878.2 upstream upstream none CCGGCCGTGAGCTGCGGCAGGACGGCTGGAG|CCCAGGCAGTAAGAAAACATATCAGCTTCCACTTTTACCTTTAAGGAGAAGCCAGCTCCCATGTTAAGAAGTTCAAATACCTAGAGACTGCGATGGTTTGCAGAGGCTCAAGCTAACCACATGGAAAGACATGGAGAGATATTCCTTGCCAACCCTCAACTACTCCAACTATTCTAAGACATCAAACCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10148 YBX1::CCDC30 ENSG00000065978.19::ENSG00000186409.19 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1797 TRUE 707 YBX1 ENSG00000065978.19 protein_coding + + chr1:42682418-42703805:+ chr1:42697262:+ chr1:43148089-43169476:+ chr1:43162933:+ CCDC30 ENSG00000186409.19 protein_coding + + chr1:42463221-42657190:+ chr1:42592090:+ chr1:42928892-43122861:+ chr1:43057761:+ chr1:42699820,chr1:42699819 chr1:42591745,chr1:42591741 NA NA chr1:43165491,chr1:43165490 chr1:43057416,chr1:43057412 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none 'Cold-shock'_DNA-binding_domain(100%)|Domain_of_unknown_function_(DUF4686)(38%) CSD(100%)|DUF4686(36%) 36 95 72 25370 580 ENST00000321358.12 ENST00000655265.1 downstream upstream duplicates(12),mismatches(20),multimappers(10) CGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGAGAAGTGATGGAG___GGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGATATAGACCACGATTCCGCAG|GCTCATAAGTGGAAGGAGATAAGTCTCAGAAGAGACTTAGGACTTTGGACTTGATGCTGGAATGAGTTAAGACTTTTGGGGACTATTGGTAGGGAATGATTGTATCTTGTAGTGTGAGAAAGACATGCAATTTGAGGGGTCATGGGTGGAATGATACGGTTTGGTTCTTTATCCCCTCCAAATCTCATCTTGAAATGTAATCCCCGTTGTTGGAGGTTGGGTCTGAGGGGAGTGTGTTTG RRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRr|lisgrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10149 YBX1::CCDC30 ENSG00000065978.19::ENSG00000186409.19 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 1797 TRUE 707 YBX1 ENSG00000065978.19 protein_coding + + chr1:42682418-42703805:+ chr1:42697262:+ chr1:43148089-43169476:+ chr1:43162933:+ CCDC30 ENSG00000186409.19 protein_coding + + chr1:42463221-42657190:+ chr1:42610978:+ chr1:42928892-43122861:+ chr1:43076649:+ chr1:42699820,chr1:42699819 chr1:42591745,chr1:42591741 NA NA chr1:43165491,chr1:43165490 chr1:43057416,chr1:43057412 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none 'Cold-shock'_DNA-binding_domain(100%)|Domain_of_unknown_function_(DUF4686)(38%) CSD(100%)|DUF4686(23%) 1 4 3 25370 30 ENST00000321358.12 ENST00000657597.2 downstream upstream none CGCAATTACCAGCAAAATTACCAGAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGAAGGCCAGGCCCAACAACGCCGGCCCTACCG...CCACAGTATTCCAACCCTCCTGTGCAGGGAGAAGTGATGGAG___GGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGAATATGTATCGGGGATATAGACCACGATTCCGCAG|CATGTCAAAAGCAACCAGGAATTGTCAGAGAAGCTATCTAAGCTACAGCAAGAGAAGGAAGCTCTACGTGAAGAATATTTGCGATTATTGAAGCTGCTTAATGTCCATGTGAG___...AATGAAGTAGA...___GGTACTTTACATGGATAAAGAAAATAAGCAATTACAtGAAAAcAGTCTTCG PQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRs|mskatrncqrsylsyskrrklyvknicdy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10190 KDM2A::ANO1 ENSG00000173120.15::ENSG00000131620.18 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67121358:+ chr11:66886734-67025553:+ chr11:66888829:+ ANO1 ENSG00000131620.18 protein_coding + - chr11:69985907-70189530:+ chr11:70021177:- chr11:69832013-70035636:+ chr11:69867283:- chr11:67134029,chr11:67134029,chr11:67134030 chr11:70043359,chr11:70043348,chr11:70043358 NA NA chr11:66901500,chr11:66901500,chr11:66901501 chr11:69889465,chr11:69889454,chr11:69889464 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 36 8 3 286 77 ENST00000529006.7 unknown downstream downstream duplicates(2) TCTGGATACTGGGTTGATCCACGGAAAAACCGAAGACGACGTTTGGGATTTAATTATTCCTCTCAGCTTTGGAATCTTTTACTTCTCACTTGGACAAGAACTCAAGAGCAGAATCTCCG___TGTTGCAATCTGGTTCCTAAGGAGGAAGAGGAAGGCAGCCCTGGAGTGGTTTCTTTACAGTAATTTCAACAGAAGAGTGAGAGATGGAACCCGAAGAAGAAAGGATTCGTTACAGCCAGAGATTG|ATAATTCCATGGGGACAGGAGGATTATGGGCATGCGTTTGGGAGCGcAGAAGAcGGGGGTTCGAATCCCTCCTCCCCCTTGGCAGCT MEPEEERIRYSQRL|iipwgqedyghafgsaedggsnpsspla NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10191 TBL1X::GPR143 ENSG00000101849.18::ENSG00000101850.13 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9501849:+ chrX:9431360-9709077:+ chrX:9469889:+ GPR143 ENSG00000101850.13 protein_coding - + chrX:9725346-9786297:- chrX:9759297:+ chrX:9693386-9754337:- chrX:9727337:+ chrX:9593349,chrX:9593348 chrX:9746389,chrX:9746385 NA NA chrX:9561389,chrX:9561388 chrX:9714429,chrX:9714425 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' high none none none 4 27 11 70 75 ENST00000645353.2 unknown downstream upstream low_entropy(3),mismappers(2),mismatches(4) GGAGGGAGGTTCGGAGCGCGGCCGGGCGCGCGGCGCCGCCACAAGTTGCGCTGCTCGCGACGAG___ATTTCCGTGAGGGTGGAAGAAAATCATACCATATCAGATGCCTCGCAGAGCACCAGGCCCACCGTGAAAG|AACTAGGGCAGAAATCCCATTTCCTCGGTGAATACCTCAGTCCTGCCGATCTCCGGATCACCAGATAAGCATCCACTGCATAGCAAAACAGCCACCAGAAGCAGGCACTGTACAACAGCTGGATCCACATCTGCAATCGGGAAGAGCCTGCATCAAAATGTCTGGAAACAG___ATCAACTTTCCATGAAGGAGCTTCCTATCAGCCTGCAGCCTGCGTTGGGGGGTGGGGGCGCCACCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10194 SPTBN2::ZDHHC24 ENSG00000173898.15::ENSG00000174165.8 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1803 TRUE 708 SPTBN2 ENSG00000173898.15 protein_coding - - chr11:66682497-66744670:- chr11:66704598:- chr11:66449968-66512141:- chr11:66472069:- ZDHHC24 ENSG00000174165.8 protein_coding - - chr11:66520637-66546235:- chr11:66524276:- chr11:66288108-66313706:- chr11:66291747:- chr11:66702588,chr11:66702591 chr11:66524568,chr11:66524568 NA NA chr11:66470059,chr11:66470062 chr11:66292039,chr11:66292039 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through high none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(33%)| CAMSAP_CH(100%),CH(100%),Spectrin(25%)|BBS1(87%) 4 9 4 34 71 ENST00000611817.5 ENST00000534073.5 upstream downstream mismatches(2) GCCGCACGCCCGAGGTGCAGgGCCGGGTGCCCACCCTGGAGCGGCACTACGAGGAGCTGCAGGCCCGGGCAGGCGAGCGAGCGCGGGCCTTGGAGGCAGCCCTGGCGCTCTACACCATGCTCAGCGAGGCCGGGGCCTGTGGACTCTGGGTGGAGGAGAAGGAGCAGTGGCTCAACGGGCTGGCCCTGCCTGAACGCCTGGAGGACCTGGAGGTCGTGCAGCAGAG|ATGGAGTCTCGCTCTGTTGTCCAGGCTGAAGTGCCATGGTTTGATCTTGGCTCACTGCAACCTCCGCCTCCCAGGCTCAAGCGATTCTCCTACCTCAACCTCCTGAGTAGCTGGGATTACAG___CCTTAAAGCCCACTCTCATCTTGCAAGCCTCTGAAGCCACCAGTTTTCTGAGATGT RTPEVQgRVPTLERHYEELQARAGERARALEAALALYTMLSEAGACGLWVEEKEQWLNGLALPERLEDLEVVQQr|wslallsrlkchglilahcnlrlpgssdsptsts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10196 SPTBN2::ZDHHC24 ENSG00000173898.15::ENSG00000174165.8 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1803 TRUE 708 SPTBN2 ENSG00000173898.15 protein_coding - - chr11:66682497-66744670:- chr11:66704598:- chr11:66449968-66512141:- chr11:66472069:- ZDHHC24 ENSG00000174165.8 protein_coding - - chr11:66520637-66546235:- chr11:66521466:- chr11:66288108-66313706:- chr11:66288937:- chr11:66702588,chr11:66702591 chr11:66524568,chr11:66524568 NA NA chr11:66470059,chr11:66470062 chr11:66292039,chr11:66292039 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through low none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(33%)| CAMSAP_CH(100%),CH(100%),Spectrin(25%)|BBS1(69%) 0 1 1 34 81 ENST00000611817.5 ENST00000534073.5 upstream downstream none GGAGATTCGAAGCCACCGGCCAACCCTGGACGCCTTGAGGGAACAGGCAGCAGCCCTGCCCCCCACACTGAGCCGCACGCCCGAGGTGCAGgGCCGGGTGC...GGAGGACCTGGAGGTCGTGCAGCAGAG|g|CTTAAAGCCCACTCTCATCTTGCAAGCCTCTGAAGCCACCAGTTTTCTGAGATGTTCCTCCCGGCCCCGGAGACCACGGATGTGGCTACCTTCTCAGAATATAGATGTTTCCATTGCGGCAGGCCGCGGaAAGCCGGAACTCAACATCAAACTGGCCAGAAACCTCTAGGAAGACGGGGACGCTGGGAAGGCTCATCTGCAAACAAGAAGCG EDLEVVQQr|lkahshlasl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10197 TMED8::PLEKHG4B ENSG00000100580.8::ENSG00000153404.15 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1028 FALSE NA FALSE NA TMED8 ENSG00000100580.8 protein_coding - - chr14:77335029-77377094:- chr14:77376936:- chr14:77801372-77843437:- chr14:77843279:- PLEKHG4B ENSG00000153404.15 protein_coding + + chr5:92168-189972:+ chr5:113251:+ chr5:92283-190087:+ chr5:113366:+ chr14:77372951 chr5:94450 NA NA chr14:77839294 chr5:94565 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |RhoGEF_domain(100%) |RhoGEF(100%) 4 2 2 62 21 ENST00000216468.8 ENST00000637938.2 upstream upstream mismatches(1) CAGATGTCTGACCTGCAGGCGGCTGAGGGGCCGGGCTCCTGGAGCCCCACAGCCCGCCCAGGGTCGGCTGGCGGCGTCGGGGACTGCCAGGGAGTGGAGGGGAGCCAGGCGGCCGCCTCAG|GATCTGGAATCTCTTGATGCCTGTATCCAGAGGACGCTCTCTGCCTTGTACCCACCGTTTGAAGCCACGGCAGCCACGGTGCTCTGGCAGCTGTTCAGCGTGGCCGAGAGGTGCCACGGTGGGGACGGGCTGCACTGCCTCAC MSDLQAAEGPGSWSPTARPGSAGGVGDCQGVEGSQAAAS|gsgis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10198 PTPRK::MBTD1 ENSG00000152894.15::ENSG00000011258.16 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRK ENSG00000152894.15 protein_coding - - chr6:127968785-128520616:- chr6:128089690:- chr6:128289930-128841761:- chr6:128410835:- MBTD1 ENSG00000011258.16 protein_coding - - chr17:51177425-51260163:- chr17:51225209:- chr17:49254786-49337524:- chr17:49302570:- chr6:128085643,chr6:128085645 chr17:51242413,chr17:51242412 NA NA chr6:128406788,chr6:128406790 chr17:49319774,chr17:49319773 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Fibronectin_type_III_domain(49%),Immunoglobulin_I-set_domain(100%),MAM_domain__meprin/A5/mu(100%)|mbt_repeat(100%) I-set(100%),MAM(100%),fn3(18%)|MBT(100%) 2 2 2 192 36 ENST00000368226.9 ENST00000586178.6 upstream downstream low_entropy(1) TTTTAATGTCACTATCTGCTACCATTACTTCCGTGGTCACAACGAGAGCAAGGCAGACTGTTTGGACATGGACCCCAAAGCCCCTCAGCATGTTGTGAACCATCTGCCACCTTATACAAATGTCAGCCTCAAGATGATCCTAACCAATCCAGAGGGAAGGAAGGAGAGTGAAGAGACAATTATTCAAACTGATGAAGATG|ACTGAACATTCTTCACGATCTGAAAGGAAAAGAAGAGATTCTTTCGGGATGTTTGACGGTTATGATAGCTGCAGTGAGGACACAAGCAGCAGCTCCAGCTCCGAAGAGAGTGAGGAAGAAGTCGCTCCTTTACCTTCTAATCTCCCGATTATCAAAAAC FNVTICYHYFRGHNESKADCLDMDPKAPQHVVNHLPPYTNVSLKMILTNPEGRKESEETIIQTDED|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, receptor type, K 1 colorectal epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10212 IPO7::ZNF143 ENSG00000205339.10::ENSG00000166478.10 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IPO7 ENSG00000205339.10 protein_coding + + chr11:9384652-9448127:+ chr11:9417148:+ chr11:9406199-9469674:+ chr11:9438695:+ ZNF143 ENSG00000166478.10 protein_coding + + chr11:9460319-9528524:+ chr11:9501091:+ chr11:9481866-9550071:+ chr11:9522638:+ chr11:9417927 chr11:9500036 NA NA chr11:9439474 chr11:9521583 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cse1(17%),Importin-beta_N-terminal_domain(100%)|Zinc_finger__C2H2_type(39%) Cse1(25%),IBN_N(100%)|zf-C2H2(4%) 1 8 4 281 93 ENST00000379719.8 ENST00000396604.5 downstream upstream duplicates(1),mismatches(1) CTATTCCAGAAGAAGATCGCCATTGTATTCGAGAAAATATTGTAGAAGCCATTATCCATTCTCCTGAGCTCATCAG___GGTACAGCTTACTACATGCATTCAT...GTCTGATCAGTCTGTCCTCATCCAGAAACAGATATTCAAGATCTTCTATGCTCTTGTTCAG___TATACACTACCACTGGAACTGATAAACCAACAGAACCTGACAGAATGGATAGAAATTTTAAAGACTGTTGTGAACAGGGATGTACCTAAT|GAGAAAGGCCCTTTAAGTGTCCCTTCGAAGGCTGCGGTCGGTCCTTTACAACATCAAATATCAGAAAAGTGCACGTTAGGACACACACAGGAGAAAGACCTTATTACTGCACAGAGCCAGGATGTGGGAGGGCATTTGCCAGTGCAACAAATTATAAAAACCATGTGAGGATACACACAG___GAGAAAAGCCATATGTTTGTACAGTTCCTGGGTGTGACAAAAGGTTTACAGAATATTCC SDQSVLIQKQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPN|ekgplsvpskaavgplqhqisekctlghtqekdlitaqsqdvgghlpvqqiiktm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10242 ENSG00000242588::UXT-AS1 ENSG00000242588.7::ENSG00000267064.2 SNU423 SRR8615654 SRR8670713 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000242588 ENSG00000242588.7 lncRNA + + chr7:128531707-128663479:+ chr7:128533730:+ chr7:128171761-128303533:+ chr7:128173784:+ UXT-AS1 ENSG00000267064.2 lncRNA + - chrX:47658833-47692326:+ chrX:47684100:- chrX:47518232-47551725:+ chrX:47543499:- chr7:128546347,chr7:128546336 chrX:47691720,chrX:47691723 NA NA chr7:128186401,chr7:128186390 chrX:47551119,chrX:47551122 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 3 5 0 57 12 ENST00000605862.6 unknown downstream downstream mismatches(1) CCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCAG___TAGAAATAATGGAAGAATTGCgTAGCCTGGACCCACGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG|ATGGTCAAGAAGGGAAAACAAGAAGCCCTAAAGCCACTGAAAGAGAAAGAAAAGTGCAACTTGGAAAGGGGTATGGTTATGAAACTGGCTGTGATCCTCGTGGCTAACACAGCGGAGCTAGCAAAACAAACAAACAAACCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10243 ENSG00000280828::UXT-AS1 ENSG00000280828.1::ENSG00000267064.2 SNU423 SRR8615654 SRR8670713 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000280828 ENSG00000280828.1 unprocessed_pseudogene + + chr7:128533652-128615970:+ chr7:128533730:+ chr7:128173706-128256024:+ chr7:128173784:+ UXT-AS1 ENSG00000267064.2 lncRNA + - chrX:47658833-47692326:+ chrX:47684100:- chrX:47518232-47551725:+ chrX:47543499:- chr7:128546347,chr7:128546336 chrX:47691720,chrX:47691723 NA NA chr7:128186401,chr7:128186390 chrX:47551119,chrX:47551122 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 1 5 0 57 12 ENST00000479267.2 unknown downstream downstream mismatches(1) GGAAGAATTGCgTAGCCTGGACCCACGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG|ATGGTCAAGAAGGGAAAACAAGAAGCCCTAAAGCCACTGAAAGAGAAAGAAAAGTGCAACTTGGAAAGGGGTATGGTTATGAAACTGGCTGTGATCCTCGTGGCTAACACAGCGGAGCTAGCAAAACAAACAAACAAACCACATGGC...ACTTTCCAAAACAGGCTCCCCCAAACCAAGTGCCAATGTGAAGGGATTTCTACACCCCACAGAGCAAGGCTGTAGTGAATTCCTAGAATTTTATGACATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10298 HELLS::EYS ENSG00000119969.16::ENSG00000188107.15 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE TRUE 1030 TRUE 1819 TRUE 709 HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:64082002:- chr6:64429876-66417119:- chr6:64791895:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |EGF-like_domain(19%),Human_growth_factor-like_EGF(25%),Laminin_G_domain(79%) |EGF(2%),Laminin_G_1(78%),Laminin_G_2(61%),hEGF(31%) 3 9 9 245 17 ENST00000419900.6 ENST00000503581.6 downstream downstream duplicates(1) CCGGCAGCGGTTGTGAGGAGTTAGCTCGCGGCATTGCAGGCTCTGAGAGGAGGGGACCCGGTTCCCGG___GCTCGGAGGCTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACCCCGGCCATGCTAGAAGAGGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGAAGATGCTGGAAAAG|ATGCAGGTTTATTCTTTCCATCTTTCAATGGGAATTCCTATTTAGAACTGCCCTTTTTGAAGTTTGTCCTGGAGAAGGAACATAACAGAACTGTTACCATCTACTTGACTATAAAAACAAACAGTTTAAATGGAACTATTCTTTACA___GTAATGGGAATAATTGTGGAAAGCAGTTTCTTCATTTATTTCTTGTGGAAGGAAGGCCATCAGTTAAATATGGGT MVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEK|mqvysfhlsmgipi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10299 HELLS::EYS ENSG00000119969.16::ENSG00000188107.15 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1819 TRUE 709 HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:64066491:- chr6:64429876-66417119:- chr6:64776384:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |EGF-like_domain(19%),Human_growth_factor-like_EGF(25%),Laminin_G_domain(77%) |EGF(2%),Laminin_G_1(70%),Laminin_G_2(54%),hEGF(31%) 0 1 2 245 26 ENST00000419900.6 ENST00000503581.6 downstream downstream none TGATTACCCCGGCCATGCTAGAAGAGGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGAAGATGCTGGAAAAG|GTAATGGGAATAATTGTGGAAAGCAGTTTCTTCATTTATTTCTTGTGGAAGGAAGGCCATCAGTTAAATATGGGTGTGGAAATTCTCAAAA...CTAATTACAGCATTAACACAAATGCATTCACCCCTATCACAATACG___GGCATCTGACAAATAGGAGATACTCAGTAAATGTCTGAATGAATGAAGAAATGAG ITPAMLEEEEQLEAAGLERERKMLEK|vmgiivessffiyflwkeghqlnmgveilk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10300 HELLS::EYS ENSG00000119969.16::ENSG00000188107.15 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1819 TRUE 709 HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:63999183:- chr6:64429876-66417119:- chr6:64709076:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |EGF-like_domain(19%),Human_growth_factor-like_EGF(25%),Laminin_G_domain(69%) |EGF(2%),Laminin_G_1(37%),Laminin_G_2(25%),hEGF(31%) 1 0 1 245 11 ENST00000419900.6 ENST00000503581.6 downstream downstream none CCGGCAGCGGTTGTGAGGAGTTAGCTCGCGGCATTGCAGGCTCTGAGAGGAGGGGACCCGGTTCCCGG___GCTCGGAGGCTCCAGCAATGGTTGAACAACTGG...ACTAGAGAGAGAGCGGAAGATGCTGGAAAAG|CTACACAACGCCTGTTGGCAGCCCTGGAGTTGTTTGTATGATTGAAATGACTGCAGATGGAAAACCTCCAGTACAGAAGAAAGACACAGAGATTTCCCATGCCTCTCAG___GCATATTTTGAATCAATGTTCCTTGGCCATATcCC LERERKMLEK|lhnacwqpwsclyd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10301 ENSG00000284428::ZNF724 ENSG00000284428.1::ENSG00000196081.10 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284428 ENSG00000284428.1 lncRNA - - chr19:23259906-23274251:- chr19:23270218:- chr19:23442708-23457053:- chr19:23453020:- ZNF724 ENSG00000196081.10 protein_coding - + chr19:23221599-23250394:- chr19:23233857:+ chr19:23404401-23433196:- chr19:23416659:+ chr19:23265568,chr19:23265554 chr19:23231696,chr19:23231504 NA NA chr19:23448370,chr19:23448356 chr19:23414498,chr19:23414306 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 5 1 5 156 20 ENST00000639752.1 unknown upstream upstream mismatches(1) CGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG___ATGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCATTATCCCAATCTCGGCTTACTACAACCTCCGCCTCCCAG|ATGAGATTTTCTGGACAAATTACACCTGCATCTTGAGAAAATGCCACCTGTTTACATGCTACGACCACACCCACAGGCAGAAGGACCAAGACCCTCAGAAAAA...TTCAGAAACAATGAAGAGAAAtATAGtAtTTTCTCCTgTCCTGTCCTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10306 HDX::ABCD1 ENSG00000165259.14::ENSG00000101986.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1821 TRUE 710 HDX ENSG00000165259.14 protein_coding - - chrX:84317874-84502479:- chrX:84440532:- chrX:83572882-83757487:- chrX:83695540:- ABCD1 ENSG00000101986.12 protein_coding + + chrX:153724856-153744755:+ chrX:153742987:+ chrX:152990311-153010209:+ chrX:153008441:+ chrX:84366368,chrX:84366371 chrX:153742359,chrX:153742350 NA NA chrX:83621376,chrX:83621379 chrX:153007813,chrX:153007804 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |ABC_transporter(27%) |ABC_tran(4%) 2 1 1 25 72 ENST00000297977.9 ENST00000218104.6 upstream upstream none ATTACATACAGCATCTAGTACAATGTACAGTAATACCAATCCATTACGGAGTAATTTTTCTCCTCATTTTGCATCATCAAACCAATTGAGATTATCACAAA...ATTTCAGGAAACCTTACTGTGCCTTGGATTACAGGGTGTTCTAGAAAAAGAGCA|GTTGGGAGGCTATGTGTGACTGGAAGGACGTCCTGTCGGGTGGCGAGAAGCAGAGAATCGGCATGGCCCGCATGTTCT...TCGACGTGGAAGGCAAGATCTTCCAGGCGGCCAAGGACGCGGGCATTGCCCTGCTCTCCATCACCCACCGGCCCTCCCTGTG___GAAATACCACACACACTTG ISGNLTVPWITGCSRKRA|vgrlcvtgrtscrvarsresawpac NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10307 HDX::ABCD1 ENSG00000165259.14::ENSG00000101986.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1821 TRUE 710 HDX ENSG00000165259.14 protein_coding - - chrX:84317874-84502479:- chrX:84468472:- chrX:83572882-83757487:- chrX:83723480:- ABCD1 ENSG00000101986.12 protein_coding + + chrX:153724856-153744755:+ chrX:153742987:+ chrX:152990311-153010209:+ chrX:153008441:+ chrX:84366368,chrX:84366371 chrX:153742359,chrX:153742350 NA NA chrX:83621376,chrX:83621379 chrX:153007813,chrX:153007804 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |ABC_transporter(27%) |ABC_tran(4%) 1 0 1 50 72 ENST00000297977.9 ENST00000218104.6 upstream upstream none CACGGACCTCATTACATACAGCATCTAGTACAATGTACAGTAATACCAATCCATTACGGAGTAATTTTTCTCCTCATTTTGCATCATCAAACCAATTGAGATTATCACAAAACCAAAACAATTACCAG|GTTGGGAGGCTATGTGTGACTGGAAGGACG RTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQ|vgrlcvtgr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10308 HDX::ABCD1 ENSG00000165259.14::ENSG00000101986.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1821 TRUE 710 HDX ENSG00000165259.14 protein_coding - - chrX:84317874-84502479:- chrX:84488024:- chrX:83572882-83757487:- chrX:83743032:- ABCD1 ENSG00000101986.12 protein_coding + + chrX:153724856-153744755:+ chrX:153742987:+ chrX:152990311-153010209:+ chrX:153008441:+ chrX:84366368,chrX:84366371 chrX:153742359,chrX:153742350 NA NA chrX:83621376,chrX:83621379 chrX:153007813,chrX:153007804 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |ABC_transporter(27%) |ABC_tran(4%) 1 0 0 5 72 ENST00000506585.6 ENST00000218104.6 upstream upstream none CACCACACCCGAG___CTACAATCTCTGGACAAAATTTTAAGAGAAACTCCCTCAGAACTCCTAAAGGTAAACAAAAGCAGGCAGATTGAGGATGGCAGTCAGAATATGAAGTGACCATATATGG|GTTGGGAGGCTATGTGTGACTGGAAGGACGTCCTGTCGGGTGGCGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10309 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1031 FALSE NA FALSE NA MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97888242:+ chr8:98881068-99048952:+ chr8:98900470:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97912978,chr8:97912975 chr8:98071799,chr8:98071793 NA NA chr8:98925206,chr8:98925203 chr8:99084027,chr8:99084021 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Domain_of_unknown_function_(DUF4573)(100%) |DUF4573(100%) 6 5 7 396 127 ENST00000254898.7 ENST00000318528.8 downstream upstream duplicates(1),mismappers(1),mismatches(1) CTGGGGCTCCGTCCTCGCCTCCCACGAGCGATCCCCGAGGAGAGCCGCGGCCCTCGGCGAGGCGAAGAGGCCGACGAGGAAGACCCGGGTGGCTGCGCCCCTGCCTCGCTTCCCAGGCGCCGGCGGCTGCAG___CCTTGCCCCTCTTGCTCGCCTTGAAAATGGAAAAGATGCTCGCAGGCTGCTTTCTGCTGATCCTCGGACAGATCGTCCTCCTCCCTGCCGAGGCCAGGGAGCGGTCACGTGGGAGGTCCATCTCTAGGGGCAGACACGCTCGGACCCACCCGCAGACGGCCCTTCTGG|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCAC MEKMLAGCFLLILGQIVLLPAEARERSRGRSISRGRHARTHPQTALL|vTSNEHFSTAEESESCFAQPKPHALGRESTVDGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10310 ENSG00000283201::ZNF724 ENSG00000283201.1::ENSG00000196081.10 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283201 ENSG00000283201.1 protein_coding - - chr19:23222755-23274221:- chr19:23274076:- chr19:23405557-23457023:- chr19:23456878:- ZNF724 ENSG00000196081.10 protein_coding - + chr19:23221599-23250394:- chr19:23233857:+ chr19:23404401-23433196:- chr19:23416659:+ chr19:23265568,chr19:23265554 chr19:23231696,chr19:23231504 NA NA chr19:23448370,chr19:23448356 chr19:23414498,chr19:23414306 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' medium none none none 4 2 2 324 20 ENST00000611392.5 unknown upstream upstream none GTTTTACGTCCTCCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG|ATGAGATTTTCTGGACAAATTACACCTGCATCTTGAGAAAATGCCACCTGTTTACATGCTACGACCACACCCACAGGCAGAAGGACCAAGACCCTCAGAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10311 ENSG00000284428::ENSG00000283201 ENSG00000284428.1::ENSG00000283201.1 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284428 ENSG00000284428.1 lncRNA - - chr19:23259906-23274251:- chr19:23274076:- chr19:23442708-23457053:- chr19:23456878:- ENSG00000283201 ENSG00000283201.1 protein_coding - + chr19:23222755-23274221:- chr19:23233857:+ chr19:23405557-23457023:- chr19:23416659:+ chr19:23265568,chr19:23265554 chr19:23231696,chr19:23231504 NA NA chr19:23448370,chr19:23448356 chr19:23414498,chr19:23414306 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' medium none none none 4 2 2 324 20 ENST00000640838.1 unknown upstream upstream none GTTTTACGTCCTCCACCTCGGGAGCCCCCGGTGACTGTCACAGCCTCTTGCCCTGTGATCTGCAGGTTCTGGGAGACGCACAGCTAAGATGCCAGGACATCCTGGAAGCTGGGAAAAG|ATGAGATTTTCTGGACAAATTACACCTGCATCTTGAGAAAATGCCACCTGTTTACATGCTACGACCACACCCACAGGCAGAAGGACCAAGACCCTCAGAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10315 MIOS::UMAD1 ENSG00000164654.16::ENSG00000219545.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1822 TRUE 711 MIOS ENSG00000164654.16 protein_coding + + chr7:7566875-7608932:+ chr7:7585809:+ chr7:7606506-7648563:+ chr7:7625440:+ UMAD1 ENSG00000219545.12 protein_coding + + chr7:7640711-7968020:+ chr7:7673343:+ chr7:7680342-8007651:+ chr7:7712974:+ chr7:7587798,chr7:7587797 chr7:7643837,chr7:7643833 NA NA chr7:7627429,chr7:7627428 chr7:7683468,chr7:7683464 NA NA sense sense in-frame intron 5'UTR deletion/read-through low none none none 2 4 4 162 177 ENST00000340080.9 ENST00000482067.3 downstream upstream low_entropy(1),mismatches(3) TGAAAAAG___GAGATCTGAATCTCAATGTGGTAGCAATGGCTTTATCGGGTTATACGGATGAGAAGAACTCCCTTTGGAGAGAAATGTGTAGCACACTGCGATTACAGCTAAATAACCCGTATTTGTGTGTCATGTTTGCATTTCTGACAAGTGAAACAGGATCTTACGATGGAGTTTTGGTA|g|CAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCCTCAGTACCAGAGACAGAAGCAGATGGATTCGTCCTTTTAG___GAGATACAACAGATGAGCAAAGAATGACAGCAAGAGGCAAAACTTCGGACATAGAGGCCAACCAACCTTTG EKGDLNLNVVAMALSGYTDEKNSLWREMCSTLRLQLNNPYLCVMFAFLTSETGSYDGVLv|aaaaaaaaaaMFHFFRKPPESKKPSVPETEADGFVLLGDTTDEQRMTARGKTSDIEANQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10316 MIOS::UMAD1 ENSG00000164654.16::ENSG00000219545.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1822 TRUE 711 MIOS ENSG00000164654.16 protein_coding + + chr7:7566875-7608932:+ chr7:7574196:+ chr7:7606506-7648563:+ chr7:7613827:+ UMAD1 ENSG00000219545.12 protein_coding + + chr7:7640711-7968020:+ chr7:7673309:+ chr7:7680342-8007651:+ chr7:7712940:+ chr7:7587798,chr7:7587797 chr7:7643837,chr7:7643833 NA NA chr7:7627429,chr7:7627428 chr7:7683468,chr7:7683464 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none none none 0 0 0 117 82 ENST00000340080.9 ENST00000482067.3 downstream upstream low_entropy(2) CTTTAACAAGGGATAGTAATATTATTAGATTGTATGATATGCAGCATACACCCACTCCCATTGGGGATGAAACTGAACCCACAATAATTGAAAGAAGTGTG...CTCAAGTCACTCTGGTATACTCTGCACT___TTATGAAGCAATACACAGAAGATATGGATCAGAAATCTCCAGGCAACAAAGGATCATTGGTTTATGCAGGAATTAAATCAATTGTAAAGTCATCGTTGG|GTAGCAGCAGCAGCAGCAGCAGCAGCAG LKSLWYTLHFMKQYTEDMDQKSPGNKGSLVYAGIKSIVKSSL|gssssssss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10317 MIOS::UMAD1 ENSG00000164654.16::ENSG00000219545.12 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1822 TRUE 711 MIOS ENSG00000164654.16 protein_coding + + chr7:7566875-7608932:+ chr7:7585805:+ chr7:7606506-7648563:+ chr7:7625436:+ UMAD1 ENSG00000219545.12 protein_coding + + chr7:7640711-7968020:+ chr7:7673309:+ chr7:7680342-8007651:+ chr7:7712940:+ chr7:7587798,chr7:7587797 chr7:7643837,chr7:7643833 NA NA chr7:7627429,chr7:7627428 chr7:7683468,chr7:7683464 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none none none 0 0 0 162 82 ENST00000340080.9 ENST00000482067.3 downstream upstream low_entropy(1) CTAAATAACCCGTATTTGTGTGTCATGTTTGCATTTCTGACAAGTGAAACAGGATCTTACGATGGAGTTTTG|GTAGCAGCAGCAGCAGCAGCAGCAGCAGC...CAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCCTCAGTACCAGAGACAGAAGCAGATGGATTCGTCCTTTTAG___GAGATACAACAGATGAG LNNPYLCVMFAFLTSETGSYDGVL|vaaaaaaaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10335 YWHAE::ETFDH ENSG00000108953.17::ENSG00000171503.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA YWHAE ENSG00000108953.17 protein_coding - - chr17:1344275-1400222:- chr17:1354211:- chr17:1247569-1303516:- chr17:1257505:- ETFDH ENSG00000171503.13 protein_coding + - chr4:158671968-158710742:+ chr4:158689040:- chr4:159593120-159631894:+ chr4:159610192:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none 14-3-3_protein(95%)| 14-3-3(83%)| 301 81 1 6995 832 ENST00000264335.13 unknown upstream downstream duplicates(50),mismatches(41),multimappers(1) CAATGACAGAACTTCCACCAACGCATCCTATTCGCTTAGGTCTTGCTCTCAATTTTTCCGTATTCTACTACGAAATTCTTAATTCCCCTGACCGTGCCTGCAG___GTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACGCTGAGTGAAGAAAGCTATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTATGGACTTCAGACATGCAGGGTGACG|GGCTTTGGAGCCATTGCTTTGAAATGGAACACCAAGAAGGATGCCTCCTGTCTTCCTGTGTCTATGGGAATTTGGGTA MTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD|glwshcfemehqegcllsscvygnlg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon) 1 endometrial stromal sarcoma mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10340 GULP1::LINC01473 ENSG00000144366.17::ENSG00000237877.8 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GULP1 ENSG00000144366.17 protein_coding + + chr2:188291669-188595931:+ chr2:188483492:+ chr2:189156396-189460658:+ chr2:189348219:+ LINC01473 ENSG00000237877.8 lncRNA - + chr2:186032884-186486005:- chr2:186060572:+ chr2:186897611-187350732:- chr2:186925299:+ chr2:188484736,chr2:188484734 chr2:186059754,chr2:186059749 NA NA chr2:189349463,chr2:189349461 chr2:186924481,chr2:186924476 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Phosphotyrosine_interaction_domain_(PTB/PID)(3%)| PID(0%),PID_2(0%),PTB(0%)| 13 10 28 261 31 ENST00000409830.6 unknown downstream upstream inconsistently_clipped(2),mismatches(1),multimappers(4) CCAG___GATTTAAGTCGTGGAACTGAACATTTATTTGGCTGATCCTCATCATGAACCGTGCTTTTAGCAGGAAGAAAG___ACAAAACATGGATGCATACACCTGAAGCTTTATCAAAACATTTCATTCCCTATAATGCAAAG|GATCTGTTCAATCCAGCCGAGAAACATGAATTATTAAGAGCTGATGGATTGGGAATCTACCAGAGTGGATCTCATTGGACACAGTATTGCTTCCACTGTGACCCTGCCTAAATATTCTTTATTGTGCCTGTCTCAAAAAACTCATTTCTGGTGAAGGCTAAAAAGAAATAATTCTCATATTCCAGCTGCAGATTTTCTATCTGGATAACTTTATTGAACTTATTTAATTTATATTTTAAAAATCCTCTGGTTGCCAG MNRAFSRKKDKTWMHTPEALSKHFIPYNAK|dlfnpaekhellradglgiyqsgshwtqycfhcdpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-561 chr2:188297492-188297588:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10341 LINC01473::GULP1 ENSG00000237877.8::ENSG00000144366.17 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC01473 ENSG00000237877.8 lncRNA - - chr2:186032884-186486005:- chr2:186456715:- chr2:186897611-187350732:- chr2:187321442:- GULP1 ENSG00000144366.17 protein_coding + + chr2:188291669-188595931:+ chr2:188477659:+ chr2:189156396-189460658:+ chr2:189342386:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion low none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%) |PID(100%),PID_2(100%),PTB(100%) 1 0 0 47 329 ENST00000703419.1 ENST00000409830.6 upstream upstream none GTCCATCGTCACCTCACCGGGAAACTTTTCCTGCCGGGCCAGTTAATGGTCCCCTGTACCATCCCCATCCTGAGTGACTACTAAGCAGCCGCAGCGACTCG...CCTCCCAAAATGCTCCTCCAAAAAAGGAGTGTGCCGCCACACCCAGCCTGAGCAACTTTTGTTTTTAAG|GATTTAAGTCGTGGAACTGAACATTTATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10342 MGAT5::ENSG00000225258 ENSG00000152127.9::ENSG00000225258.1 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1826 TRUE 712 MGAT5 ENSG00000152127.9 protein_coding + + chr2:134119983-134454621:+ chr2:134428439:+ chr2:134877554-135212192:+ chr2:135186010:+ ENSG00000225258 ENSG00000225258.1 lncRNA - - chr2:180571712-180692454:- chr2:180635790:- chr2:181436439-181557181:- chr2:181500517:- chr2:134428772,chr2:134428771 chr2:180636330,chr2:180636342 NA NA chr2:135186343,chr2:135186342 chr2:181501057,chr2:181501069 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Domain_of_unknown_function_(DUF4525)(100%),Glycosyltransferase_family_18(81%)| DUF4525(100%),Glyco_transf_18(84%)| 12 13 9 107 35 ENST00000409645.5 unknown downstream downstream duplicates(2),mismatches(4) CAACCCACCCAAAAGCAGCAAAAACACAGACTTTTTCATTGGCAAGCCAACTCTGAGAGAG___CTGACATCCCAGCATCCTTACGCTGAAGTTTTCATCGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGGAGGAAGTAGAGGATGCAGTGAAAGCAATTTTAAATCAGAAG___ATTGAGCCATACATGCCATATGAATTTACGTGCGAGGGGATGCTACAGAGAATCAATGCTTTCATTGAAAAACAG|GGAGAAGGAAGGAGTCACTTTTGTTGCTTTGAGCTGCACTGCCTGGGATTGAGAAAGGGTTGGTGCAAACATTGCCTTAGCTCTCTCAGCTGGAGTCTCACTAGGTCATGTGTCACCCTAGTCCATGCGCTCCAAGACCAGCCTAGCACTAAGACTTACCTAAGAAATGCAGT NPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQ|gegrshfccfelhclglrkgwckhclsslswsltrscvtlvhalqdqpstktylrna NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3679 chr2:134127125-134127192:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10343 MGAT5::ENSG00000225258 ENSG00000152127.9::ENSG00000225258.1 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1826 TRUE 712 MGAT5 ENSG00000152127.9 protein_coding + + chr2:134119983-134454621:+ chr2:134428370:+ chr2:134877554-135212192:+ chr2:135185941:+ ENSG00000225258 ENSG00000225258.1 lncRNA - + chr2:180571712-180692454:- chr2:180643000:+ chr2:181436439-181557181:- chr2:181507727:+ chr2:134428772,chr2:134428772,chr2:134428772 chr2:180636302,chr2:180636301,chr2:180636277 NA NA chr2:135186343,chr2:135186343,chr2:135186343 chr2:181501029,chr2:181501028,chr2:181501004 NA NA sense antisense unknown CDS intron deletion/5'-5' low none Domain_of_unknown_function_(DUF4525)(100%),Glycosyltransferase_family_18(77%)| DUF4525(100%),Glyco_transf_18(84%)| 0 0 3 1 23 ENST00000409645.5 unknown downstream upstream none CTGAAGTTTTCATCGGGCGGCCACATGTGTGGACTGTTGACCTCAACAATCAGGAGGAAGTAGAGGATGCAGTGAAAGCAATTTTAAATCAGAAG___ATTGAG...|...TCTTCACAGAAATTGAAAAGATAATTATAAAATTTACAtGGAACCATAAAAAAACTCACAATTGCTACCCAAAGCTATCCTGAACAAAAGGAACAAAACTGGAGGAATCATAATACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3679 chr2:134127125-134127192:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10344 ATG5::LIN28B ENSG00000057663.16::ENSG00000187772.8 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106248150:- chr6:106493298-106773666:- chr6:106696025:- LIN28B ENSG00000187772.8 protein_coding + - chr6:104936616-105083332:+ chr6:105010188:- chr6:105384491-105531207:+ chr6:105458063:- chr6:106232559,chr6:106232563 chr6:105019321,chr6:105019322 NA NA chr6:106680434,chr6:106680438 chr6:105467196,chr6:105467197 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Autophagy_protein_Apg5_(59%)| APG5(52%)| 5 4 23 215 14 ENST00000636437.1 unknown upstream downstream duplicates(1),mismatches(3) ATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGTTTCACGCTATATCAGGATGAGATAACTGAAAGGGAAGCAGAACCATACTAT...CTTGGAACATCACAGTACATTTTAAG___AGTTTTCCAGAAAAAGACCTTCTGCACTGTCCATCTAAGGATGCAATTGAAGCTCATTTTATGTCATGTATGAAA...TTAAAACATAAAAGTCAAGTAATCAATGAAATGCAGAAAAAAGATCACAAGCAACTCTGGATGGGATTGCAAAATG___ACAGATTTGACCAGTTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGTTATATCCCCTTTAGAATATATCAG|ACACGGGGTTTCGTCATGTTGCCCAGGCTGCTCTCATACTCCTGGGCTTAAGCGATCTGTCTGCCTGGCCTATTCTTACTGCTATGAAGTATTCAGTAAGAATGGCATGTGCATGGAACTTATATTGGATGCTACTAACAGATTTTAGACAATATTCAAGTGACTGACAATCTGACATTTTATATTGTTCATGTAATTGGAAAATGGGGAGAAGGTAGATGAAGAGACAGAGAGATGAATATGAGGAAATGAATATGAATATGAATGA LKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQ|trgfvmlprllsyswa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10345 PMM2::USP7 ENSG00000140650.13::ENSG00000187555.17 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PMM2 ENSG00000140650.13 protein_coding + + chr16:8788823-8862534:+ chr16:8797948:+ chr16:8882680-8956391:+ chr16:8891805:+ USP7 ENSG00000187555.17 protein_coding - + chr16:8892097-8975328:- chr16:8959669:+ chr16:8985954-9069185:- chr16:9053526:+ chr16:8798417,chr16:8798418 chr16:8959436,chr16:8959434 NA NA chr16:8892274,chr16:8892275 chr16:9053293,chr16:9053291 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none Hydrolase_3(0%),TMEM70(100%)| 4 19 2 307 35 ENST00000683274.1 unknown downstream upstream duplicates(2) CTTGTAAGGTGCGGCTAGAAACTGGGGACATGGCAGCGCCTGGCCCAGCGCTCTGCCTCTTCGACGTGGATGGGACCCTCACCGCCCCGCGGCAG|TGCTATTTGAAAGAATCTTCTATTAGTTATAATCACAACAGCACAAGTTTATCTGGCTGGGTGTGTTCAAGAGAACTCACATTCTACTCCCAAACATGCTTCAGCAGAAAAGTAACTGCACAAGTTTGGAAGAAACCCACCACCACCCCCGTAACAAAAAACACAGAAGCCTAGATCAGAAGCTGCAGCTGACCCATTAATTTGCTCCTAATAGCAGCAGTCTAAGTGTCATAGAAAAGTCTAACATCTATCC MAAPGPALCLFDVDGTLTAPRQ|cylkessisynhnstslsgwvcsreltfysqtcfsrkvtaqvwkkptttpvtkntea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10346 ZFHX3::ENSG00000286099 ENSG00000140836.17::ENSG00000286099.1 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73047752:- chr16:72816784-73925770:- chr16:73081651:- ENSG00000286099 ENSG00000286099.1 lncRNA + - chr14:40630006-40905513:+ chr14:40636138:- chr14:41099211-41374718:+ chr14:41105343:- chr16:73020319,chr16:73020322 chr14:40681435,chr14:40681435 NA NA chr16:73054218,chr16:73054221 chr14:41150640,chr14:41150640 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 8 6 8 25 44 ENST00000268489.10 unknown upstream downstream duplicates(1),mismatches(1) GGAGCATGCCGCCTGGGGTGGGTGAGCTCGGGGCTCGGGTGCCACTGGAATTTCCCGTTGTTGCGCATGGCGGCGCGGCCCCCGGACCTGCAAGTGCCGCCTCCCTCCGGAGGTGCGCGGAGGCTTGGTGTGCCAG|ACACTATAGCTGGTAATACGCTGGGTTACACCTGAAGCCAGCAAGTCTCTGAGTTTCACCCAAGGCCTGAAGAGGGTACTGCCTGGCTACCACTCCTGAATTTTCAGGACTCAAGGACTCTTTAGTCAGCAGGTTCTGCCAGGACTTGGTCTTTCCTTTCAAATCAACAGGTTCCCATCTGGCCCAGGCTGTGTCTAGAAATGTCATCTGGGATCTAAGGCCTGAAATGGGCGTGTCAGAACTCTTCC...A unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 10351 AUTS2::TNRC18 ENSG00000158321.19::ENSG00000182095.15 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 1034 TRUE 1828 TRUE 713 AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69599962:+ chr7:69063282-70258492:+ chr7:69064948:+ TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5394595:- chr7:5346421-5465045:- chr7:5434226:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |BAH_domain(100%) |BAH(100%) 4 7 2 34 143 ENST00000342771.10 ENST00000430969.6 downstream downstream mismappers(2) GCGGCGGCGGGGCTGGCCGGACCCGGGCGCTCTCACTCGCCTCGTCGTCGGGCTCCGACAAGGAAGACAATGGGAAGCCCCCGTCCTCCGCCCCGTCCCGGCCCAGACCCCCGCGGAGGAAGCGGAGAGAGTCCACCTCGGCAGAAGAGGACATCATTGATGGATTTGCCATGACCAGCTTTGTCACTTTTGAAGCGCTGGAG|GCGAGGCCTTCTTGGGCAGCTTTGTGGCCAGCGGGATGGGGCCCTCGGCCTCGTCCCATGGGAGCCCAGTGCCACTGCCCTCTGACCTGTCcTTCCGCTCCCCAACCCCTAGCAACCTGCCCATGGTGCAGCTGTGGGCCGCCCACGCCCATGAAG___GCTTCTCCCACCTGCCCAGTGGGCTGTACCCATCCTACCTCCACCTGAACCACCTGGAGCCCCCCAGCAGTGGGAGCC GGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALE|arpswaalwpagwgprprpmgaqchcpltcpsapqplatcpwcscgpptpmkasptcpvgcthptst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation 10352 AUTS2::TNRC18 ENSG00000158321.19::ENSG00000182095.15 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1828 TRUE 713 AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69599962:+ chr7:69063282-70258492:+ chr7:69064948:+ TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5378024:- chr7:5346421-5465045:- chr7:5417655:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |BAH_domain(100%) |BAH(100%) 1 0 0 34 292 ENST00000342771.10 ENST00000430969.6 downstream downstream none CTGGGGGCCGGCGCGGCCGGCGGCGGCGGGGCTGGCCGGACCCGGGCGCTCTCACTCGCCTCGTCGTCGGGCTCCGACAAGGAAGACAATGGGAAGCCCCC...CTTTTGAAGCGCTGGAG|GGCACGGCCGAGCAGATGAGGACTGTGTGGACGACCGGGCCAGACACCGGGAGGAACGGCTGCTCGGGGCACGGCTGGACCGGG FEALE|gtaeqmrtvwttgpdtgrngcsghgwt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation 10356 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1829 TRUE 714 AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:50023763:- chr1:48998526-50489626:- chr1:50489435:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50266589:- chr1:50695334-50786864:- chr1:50732261:- chr1:49880226,chr1:49880230 chr1:50268552,chr1:50268553 NA NA chr1:50345898,chr1:50345902 chr1:50734224,chr1:50734225 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 4 3 34 10 ENST00000371839.6 ENST00000641749.1 upstream downstream duplicates(1),mismatches(1) CAACCGTCGTGCCGCGTCTTCCTGAGGTAGCTCCTGTCAGCCCACTGATCCCACCACCCGCTCCCTACTGCCCCGCGGTCTTCGCGTGAGCTCGGAGACTGAGGGACAACAAAAATGGCGGAGGGGAGCCAGTCGGCGCCTGAGGCAG|AGCACTCTGGCTGTCAACTGAAAACAGCAGCAGCAGCAGCAGCAGCAGCAACACCACCACCAACAACAACGACAACTGTTGCATATATAACTGAAGATCCACAGAGTCCCTCTTTCCAGTGTTAGTTGCTACAAGGAGTGAGAGAATGAAGATCTGACCTCAAGGAATACAAGAGTTTTGTTCAAAGTTCCAAGACTAAGCTATTAGAAG MAEGSQSAPEA|ehsgcqlktaaaaaaaatppptttttvayitedpqspsfqc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10357 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1829 TRUE 714 AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:50023763:- chr1:48998526-50489626:- chr1:50489435:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50258121:- chr1:50695334-50786864:- chr1:50723793:- chr1:49880226,chr1:49880230 chr1:50268552,chr1:50268553 NA NA chr1:50345898,chr1:50345902 chr1:50734224,chr1:50734225 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 0 1 1 34 6 ENST00000371839.6 ENST00000641749.1 upstream downstream none CCGCGTCTTCCTGAGGTAGCTCCTGTCAGCCCACTGATCCCACCACCCGCTCCCTACTGCCCCGCGGTCTTCGCGTGAGCTCGGAGACTGAGGGACAACAAAAATGGCGGAGGGGAGCCAGTCGGCGCCTGAGGCAG|CAGGTAGCTGTCCAAGGGAGAGATTGCTGAAGCTTGGTGGCGGTGATGGTTGTGCATTGGCAGTGAAGGTCCAGAAGTTTCTCCAGTTCTTAAG___AAGGAGGAACGTGCCG MAEGSQSAPEA|agscprerllklgggdgcalavkvqkflqflrrrnv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10360 SYTL3::TULP4 ENSG00000164674.17::ENSG00000130338.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1036 FALSE NA FALSE NA SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158651842:+ chr6:159071046-159185908:+ chr6:159072874:+ TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158413065:+ chr6:158653268-158932860:+ chr6:158834097:+ chr6:158656216,chr6:158656212 chr6:158337296,chr6:158337289 NA NA chr6:159077248,chr6:159077244 chr6:158758328,chr6:158758321 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Tub_family(100%) |Tub(100%) 5 4 0 49 104 ENST00000367081.7 ENST00000367097.8 downstream upstream none GCGAAG___GCTCCCCGAATGAGAAAGAATACTCGGAATCAGCGGTGAATTGCAGTGATCTTTCAGAGAAAGCGCCTGTTCAACTTTGTCCTCTCTCAG|GTTGTGCTGGTGAGGTGGAATGAGCCCTACCAGAAACTGGCCACGTGCGATGCGGACGGAGGCATATTCGTGTGGATTCAGTACGAGGGCAGGTGGTCTGTGGAGCTGGTCAACGACCGCGGGGCGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ovarian OVARY no_match 158673455 FALSE 158511391 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10361 RRP36::RPL7L1 ENSG00000124541.7::ENSG00000146223.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1830 TRUE 715 RRP36 ENSG00000124541.7 protein_coding + + chr6:43021623-43034156:+ chr6:43029190:+ chr6:42989361-43001894:+ chr6:42996928:+ RPL7L1 ENSG00000146223.16 protein_coding + + chr6:42879616-42889925:+ chr6:42883451:+ chr6:42847354-42857663:+ chr6:42851189:+ chr6:43033517,chr6:43033515 chr6:42881958,chr6:42881953 NA NA chr6:43001255,chr6:43001253 chr6:42849696,chr6:42849691 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none rRNA_biogenesis_protein_RRP36(97%)|Ribosomal_L30_N-terminal_domain(59%),Ribosomal_protein_L30p/L7e(100%) RRP36(99%)|Ribosomal_L30(100%),Ribosomal_L30_N(4%) 2 4 3 977 991 ENST00000607394.1 ENST00000602561.1 downstream upstream duplicates(1),mismatches(1) ACGAAAGCAACAGCAGGAGCTGCACCTGGCCCTGAAGCAAGAACGTCGGGCTCAGGCCCAGCAaGGCCATCGGCCATACTTCCTGAAAAAAT___CTGAGCAGCGCCAGTTGGCACTAGCTGAGAAGTTCAAGGAGCTGAAACGCAGCAAGAAATTGGAGAACTTCTTGAGTCGAAAGAGGCGACGAAATGCAG|CAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAG___GATTGACGGCGTGAGTTTACTGGTGCAGAGAACCATTGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCAC...GTCCGAGAACTCATTTTGAAACGTGGACAAGCCAAGGTCAAGAATAAGACCATCCCTCTGACAGACAATACAGTGATTGAGGAGCACCTGGGTGAGTGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10362 RRP36::RPL7L1 ENSG00000124541.7::ENSG00000146223.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1830 TRUE 715 RRP36 ENSG00000124541.7 protein_coding + + chr6:43021623-43034156:+ chr6:43027477:+ chr6:42989361-43001894:+ chr6:42995215:+ RPL7L1 ENSG00000146223.16 protein_coding + + chr6:42879616-42889925:+ chr6:42883451:+ chr6:42847354-42857663:+ chr6:42851189:+ chr6:43033517,chr6:43033515 chr6:42881958,chr6:42881953 NA NA chr6:43001255,chr6:43001253 chr6:42849696,chr6:42849691 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none rRNA_biogenesis_protein_RRP36(76%)|Ribosomal_L30_N-terminal_domain(59%),Ribosomal_protein_L30p/L7e(100%) RRP36(57%)|Ribosomal_L30(100%),Ribosomal_L30_N(4%) 0 2 0 914 991 ENST00000244496.6 ENST00000493763.7 downstream upstream mismatches(1) AGAAACTGCAGCAACTGgTTCAGCGAATG___GtGCAGCAAGAAATGGCACAGCAGGAACGAAAGCAACAGCAGGAGCTGCACCTGGCCCTGAAGCAgGAACG...CTCAGGCCCAGCAGGGCCATCGGCCATACTTCCTGAAAAAAT|CAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAG___GATTGACGGCGTGAGTTTACTGGTGCAGAGAACCATTGCAAG QAQQGHRPYFLKK|seerkraqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10363 RRP36::RPL7L1 ENSG00000124541.7::ENSG00000146223.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1830 TRUE 715 RRP36 ENSG00000124541.7 protein_coding + + chr6:43021623-43034156:+ chr6:43026141:+ chr6:42989361-43001894:+ chr6:42993879:+ RPL7L1 ENSG00000146223.16 protein_coding + + chr6:42879616-42889925:+ chr6:42883451:+ chr6:42847354-42857663:+ chr6:42851189:+ chr6:43033517,chr6:43033515 chr6:42881958,chr6:42881953 NA NA chr6:43001255,chr6:43001253 chr6:42849696,chr6:42849691 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none rRNA_biogenesis_protein_RRP36(37%)|Ribosomal_L30_N-terminal_domain(59%),Ribosomal_protein_L30p/L7e(100%) RRP36(24%)|Ribosomal_L30(100%),Ribosomal_L30_N(4%) 0 1 0 1343 991 ENST00000244496.6 ENST00000493763.7 downstream upstream none AAAACATACCAATTCTTGAATGACATCCGAGCGAAAGAGAAAGAG|CAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGAAACGTG KTYQFLNDIRAKEKE|QKKGKGLRFKRLESFLHDSWRQKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10366 DDX10::ASH1L ENSG00000178105.12::ENSG00000116539.14 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DDX10 ENSG00000178105.12 protein_coding + + chr11:108665058-108940999:+ chr11:108685298:+ chr11:108535785-108811726:+ chr11:108556025:+ ASH1L ENSG00000116539.14 protein_coding - - chr1:155335268-155563162:- chr1:155415923:- chr1:155305059-155532953:- chr1:155385714:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none DEAD/DEAH_box_helicase(100%)|AWS_domain(100%),BAH_domain(100%),Bromodomain(100%),SET_domain(100%) DEAD(100%),ResIII(100%)|AWS(100%),BAH(100%),Bromodomain(100%),PHD(100%),SET(100%) 2 4 0 7 249 ENST00000686283.1 ENST00000677213.1 downstream downstream none CTCcGAGCCAGGTGTGGGATATAGTCTCGTGGTGCGCCGTTTCTTAAGCCGGTCTGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|CTTTAATGAAGCACCAGTTGAGATTCCCAGTCCTTCTGAAACCCCAGCTAAACCTTCTGAACCTGAAAGTACCTTGCAGCCTGTGCTTTCTCTCATCCCAAGGGAAAAGAAGCCCCCACGTCCCCCAAAGAAGAAGTATCAGAAAGCAGGGCTGTATTCTGACGTTTACAAAAC SEPGVGYSLVVRRFLSRSEKRNIRVGVTRFSs|FNEAPVEIPSPSETPAKPSEPESTLQPVLSLIPREKKPPRPPKKKYQKAGLYSDVYK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-555 chr1:155346350-155346445:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 1 Yes AML* leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10370 SIPA1L3::ENSG00000245008 ENSG00000105738.11::ENSG00000245008.4 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:38182740:+ chr19:38397848-38699009:+ chr19:38673380:+ ENSG00000245008 ENSG00000245008.4 lncRNA - - chr11:128614340-128686922:- chr11:128629773:- chr11:128484235-128556817:- chr11:128499668:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none C-terminal_domain_of_SPAR_protein(0%),Rap/ran-GAP(100%)| Rap_GAP(100%),SPAR_C(0%)| 1 3 1 260 4 ENST00000601054.1 ENST00000572256.1 downstream downstream none CGCCAGGAGTCCCTGGGATGaCCTTCTGGGGACACAGCCCTGAAAG___TGACATGGGCTCGAGGGTTGGCTACCCCGCTCAGGTTTACAAAACTGCCAGTGCAGAGACTCCTCGGCCCTCCCAGCTGGCCCAGCCCAGCCCC...CGGAGGAGCCCCCACCACGGCCACTCCCCTTCAGTGACCCAAAGAA|GCATACATTAAGTGTGGGAGAGAGCTATCCTGCTCAAAAGAGAGTGCTCCCCATTCTGACACATCTGGAAATCATCTGGCAAATGTCTTCTGACCGTCTCTGAGTGAAAAAGCCTTCGAGTGCATCAGCCCATTTCAGCTCCACAACTT EEPPPRPLPFSDPKk|htlsvgesypaqkrvlpilthleiiwqmssdrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10375 GRIA4::CARD18 ENSG00000152578.15::ENSG00000255501.3 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GRIA4 ENSG00000152578.15 protein_coding + - chr11:105609535-105982090:+ chr11:105942553:- chr11:105480262-105852817:+ chr11:105813280:- CARD18 ENSG00000255501.3 protein_coding - - chr11:105137714-105531697:- chr11:105458453:- chr11:105008441-105402424:- chr11:105329180:- chr11:105835305,chr11:105835310 chr11:105523113,chr11:105523115 NA NA chr11:105706031,chr11:105706036 chr11:105393840,chr11:105393842 NA NA antisense sense unknown intron 5'UTR/splice-site deletion/3'-3' high none |Caspase_recruitment_domain(100%) |CARD(100%) 1 0 3 12 16 unknown ENST00000649856.1 upstream downstream none CTGGCATGACCgACTGAGAGAAGGAAGAGCACTGTGGTGTGGTGGCCCACACCGGGAAGGGGAACCTCCTCTCCACAGCCACGGGAGGCG___GGTCTGGCTGT...GTGGCATGATCACAACTCAGTGAAACGTCTACCTCCCAGGCTCGAGCAATCCTCCCACCTCAGCCTCCTGG___AGCACCGGAGATTGTCAGAAGATCTCATTTCTAGTCTTAGCTGTAGGACTGTGGGCAAGTCACC|GATGTCCCTCTTCATGGAGAGCTGCCTGAAGCTGAGAAGGGTGCGACGGACCTGAAGGCTGCACAGCGCCGGGTCTTACCCAAGGCTCAAGGTGACCGCTGCCTGGTTTCTGCTGGTGTTTATTCAAAGCCCAAGGGCTCTCCAGTCAGCAAGTGGTGAATCTAGTCAGACATGTGTCCTACGCTTCAGGGCAATGAGCTTCCCCTCAGCCTAAGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10377 B3GALNT2::LYST ENSG00000162885.14::ENSG00000143669.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1832 TRUE 716 B3GALNT2 ENSG00000162885.14 protein_coding - - chr1:235447190-235504452:- chr1:235465636:- chr1:235610505-235667752:- chr1:235628953:- LYST ENSG00000143669.16 protein_coding - - chr1:235661041-235883724:- chr1:235833667:- chr1:235824341-236047024:- chr1:235996967:- chr1:235461475,chr1:235461484 chr1:235851351,chr1:235851357 NA NA chr1:235624787,chr1:235624796 chr1:236014651,chr1:236014657 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Beige/BEACH_domain(100%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%) |Beach(100%),PH_BEACH(100%),WD40(100%) 1 1 1 103 72 ENST00000366600.8 ENST00000697178.1 upstream downstream mismatches(2) TGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAG___GAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTG...CTCAGAGTCATTACA___GCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGG|GTGAAGCTTTGTTCTAAGAATATTTGTTTCATCTAGTTTATGAGTCCAAATGATATAGACTGTAAATGTCACAGCAGTGGTGAAAGACTG___CTCGGTCATGAGCACCGACAGTAACTCACTGGCACGTGAATTTCTGACCGATGTCAACCGGCTTTGCAATGCAGTGGTCCAGAGGGTGGAGGCCAGGGAGGAAGAAGAGGAGGAGACGCACATGGCAACCCTTGG...AGATATAATCCTGACCAAAGAAAAGAACTCAAGTTCACAAAGATCCACTCAGGAAAAATTACATTTAGAAGGAAGTGCCCTGTCTAGgCAGGTTTCTGCAA LRVITAGEGALPHEFLEGVEGVAGGFIYTIQ|gealf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 235647638 FALSE 235850347 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10378 B3GALNT2::LYST ENSG00000162885.14::ENSG00000143669.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1832 TRUE 716 B3GALNT2 ENSG00000162885.14 protein_coding - - chr1:235447190-235504452:- chr1:235480054:- chr1:235610505-235667752:- chr1:235643370:- LYST ENSG00000143669.16 protein_coding - - chr1:235661041-235883724:- chr1:235833667:- chr1:235824341-236047024:- chr1:235996967:- chr1:235461475,chr1:235461484 chr1:235851351,chr1:235851357 NA NA chr1:235624787,chr1:235624796 chr1:236014651,chr1:236014657 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none |Beige/BEACH_domain(100%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%) |Beach(100%),PH_BEACH(100%),WD40(100%) 0 0 0 184 72 ENST00000366600.8 ENST00000697178.1 upstream downstream mismatches(1) GGAACAATTCATCTTACCAGAG|GTGAAGCTTTGTTCTAAGAATATTTGTTTCATCTAGTTTATGAGTCCAAATGATATAGACTGTAAATGTCACAGCAGTG...TGAGCACCGACAGTAACTCACTGGCACGTGAATTTCTGACCGATGTCAACCGGCTTTGCAATGCAGTGGTCCAGAGGGTGGAGGCCAGGGAGGAAGAAGAG EQFILPE|vklcsknicfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 235647638 FALSE 235850347 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10379 ENSG00000250993::ENSG00000248431 ENSG00000250993.1::ENSG00000248431.2 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1833 TRUE 717 ENSG00000250993 ENSG00000250993.1 lncRNA - - chr4:179389134-179465305:- chr4:179465195:- chr4:180310288-180386459:- chr4:180386349:- ENSG00000248431 ENSG00000248431.2 lncRNA + + chr4:162705359-162907428:+ chr4:162892340:+ chr4:163626511-163828580:+ chr4:163813492:+ chr4:179460571,chr4:179460571,chr4:179460571,chr4:179460571,chr4:179460573 chr4:162792821,chr4:162792814,chr4:162792807,chr4:162792856,chr4:162792854 NA NA chr4:180381725,chr4:180381725,chr4:180381725,chr4:180381725,chr4:180381727 chr4:163713973,chr4:163713966,chr4:163713959,chr4:163714008,chr4:163714006 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 2 32 1 ENST00000512036.1 ENST00000661387.1 upstream upstream low_entropy(1) AAACAATATAGCCTGTAAAACAGTGATTTCTTTGTACCGTCGGGACCACTGCTATGAAAACCGGCCTTAGAGGAAAAATGAGTTATTGTACTTTTACCTTA...CTGGGCCTCAGATTTCTCTCTGGACGATGAAGAATAGTAGTACCTCATCACAGAGCTGCTGTCAGGACTAACAGGAGAAATCCCATATAATGTACCTAGAATATAGAAACCAGTCACTAAAC|CCAGAGCCATGGTACCAGCATGAACAGC...CTTCACCAGAGCCAATGGGATCTCTG___ATGCGGAAATCACTTAGAGAAGTTTAGACTGCTTGACTAAAGTCACACAGCTG___ACTGGCTCTTGCTATGTTGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10380 ENSG00000250993::ENSG00000248431 ENSG00000250993.1::ENSG00000248431.2 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1833 TRUE 717 ENSG00000250993 ENSG00000250993.1 lncRNA - - chr4:179389134-179465305:- chr4:179465195:- chr4:180310288-180386459:- chr4:180386349:- ENSG00000248431 ENSG00000248431.2 lncRNA + + chr4:162705359-162907428:+ chr4:162906547:+ chr4:163626511-163828580:+ chr4:163827699:+ chr4:179460571,chr4:179460571,chr4:179460571,chr4:179460571,chr4:179460573 chr4:162792821,chr4:162792814,chr4:162792807,chr4:162792856,chr4:162792854 NA NA chr4:180381725,chr4:180381725,chr4:180381725,chr4:180381725,chr4:180381727 chr4:163713973,chr4:163713966,chr4:163713959,chr4:163714008,chr4:163714006 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 1 32 0 ENST00000512036.1 ENST00000661387.1 upstream upstream none TTTCTCTCTGGACGATGAAGAATAGTAGTACCTCATCACAGAGCTGCTGTCAGGACTAACAGGAGAAATCCCATATAATGTACCTAGAATATAGAAACCAGTCACTAAAC|ACTCTAGAATCATAGATCCACCAC...CAGTGTGCTCTGGATGTGACACACAGAGTCAAAGAAGATTATTTTGGAGCTCTAAGATTTATTTACTGCCCTGCTGGATTTTAGACTTGTGTGGGACCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10387 ENSG00000286385::COPS3 ENSG00000286385.1::ENSG00000141030.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1040 TRUE 1835 TRUE 718 ENSG00000286385 ENSG00000286385.1 lncRNA - - chr13:82778208-83102335:- chr13:83063214:- chr13:83352343-83676470:- chr13:83637349:- COPS3 ENSG00000141030.13 protein_coding - - chr17:17246616-17281273:- chr17:17262106:- chr17:17149930-17184587:- chr17:17165420:- chr13:82795998,chr13:82795993,chr13:82796043,chr13:82796024,chr13:82796023,chr13:82796011,chr13:82796000 chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486 NA NA chr13:83370133,chr13:83370128,chr13:83370178,chr13:83370159,chr13:83370158,chr13:83370146,chr13:83370135 chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |PCI_domain(100%) |PCI(100%),Sel1(0%) 8 3 10 38 2597 ENST00000663739.1 ENST00000268717.10 upstream downstream mismatches(1) ATCTCAATCTCCTGTGTCTTTAACTCTTCTTAATTCCCCACTGATGACGAAAATGATAGAAAGCAATAAACCAGATTTGAAATTCAGAGTGAAACATCTAAGATCG___TCTGCAGTGCAGTGGCACGCTCTCTGCAACCTCTGTCTCCCGGGTTCAAACCATTCTCCTGCCTCAATCTCCAGAGTGGCTGATATTACAGGATTCCACCACCAAACCCAG___GTTTATATGTGCAACTTGACATTCCAAACAAATACTTCAAGTCAAAATATTCCAAGCCGAAATTCCTTCCAAACATGCATTTCAGCCTGGTTATCTCTTG|GCTATAACTACTCCTGCCATGGCGGTCAGTCATATCATGTTGGAATCATATAAAAAGTATATTTTAGTGTCTTTGATATTACTTGGCAAAGTACAACAGCTACCAAAATATACATCTCAAATTGTGGGTAGATTCATTAAG___CCTCTTAGCAATGCATACCACGAGTTAGCACAAGTGTATTCAACCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10388 ENSG00000286385::COPS3 ENSG00000286385.1::ENSG00000141030.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1835 TRUE 718 ENSG00000286385 ENSG00000286385.1 lncRNA - - chr13:82778208-83102335:- chr13:83063214:- chr13:83352343-83676470:- chr13:83637349:- COPS3 ENSG00000141030.13 protein_coding - - chr17:17246616-17281273:- chr17:17254945:- chr17:17149930-17184587:- chr17:17158259:- chr13:82795998,chr13:82795993,chr13:82796043,chr13:82796024,chr13:82796023,chr13:82796011,chr13:82796000 chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486 NA NA chr13:83370133,chr13:83370128,chr13:83370178,chr13:83370159,chr13:83370158,chr13:83370146,chr13:83370135 chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |PCI_domain(44%) |PCI(45%) 1 0 0 38 3064 ENST00000663739.1 ENST00000268717.10 upstream downstream mismatches(1) CTCTCTGCAACCTCTGTCTCCCGGGTTCAAACCATTCTCCTGCCTCAATCTCCAGAGTGGCTGATATTACAGGATTCCACCACCAAACCCAGGT...TCCAAGCCGAAATTCCTTCCAAACATGCATTTCAGCCTGGTTATCTCTTG|ACCTTTTTAACTCTATCATTACAAGATATGGCAAGTCGTGTGCAGTTGTCTGGgCCTCAGGAGGCgGAGAAATACGTTCTGCcCATG___ATAGAAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10393 JAKMIP3::LRRC27 ENSG00000188385.13::ENSG00000148814.18 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1041 FALSE NA FALSE NA JAKMIP3 ENSG00000188385.13 protein_coding + + chr10:132036336-132184858:+ chr10:132104943:+ chr10:133849840-133998362:+ chr10:133918447:+ LRRC27 ENSG00000148814.18 protein_coding + + chr10:132332154-132381508:+ chr10:132344498:+ chr10:134145658-134195012:+ chr10:134158002:+ chr10:132115768 chr10:132342324 NA NA chr10:133929272 chr10:134155828 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 3 4 4 24 34 ENST00000668452.1 ENST00000368614.8 downstream upstream duplicates(1) GCCGGAGCACCCTACCCCTGGGCATCCCCCTGGCCATCCAGCCTCACCATGTCCAAGAGGGGCATGAGCAGCCGGGCCAAGGGGGACAAGGCAGAGGCCCTCGCGGCGCTGCAGGCGGCCAACGAGGATCTTCGAGCCAAGCTCACAGACATCCAGATCGAGCTGCAGCAGGAGAAGAGCAAG|GGAGCGTAACCACGCTGAAAGCACTGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTCGTTGTGCAGAAGGGATTGGTGGCTATCCAGCGCTTCCTGCGGATGTGGGCAGTAGAACACTCTCTCCCCAGAAATCCAACTTCTCAAG___AGGCTCCACCGGTTAGAGAGATGACCCTCCGTGACCTCCCGAGCCC MSKRGMSSRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSK|ga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10400 RB1::BEST1 ENSG00000139687.16::ENSG00000167995.17 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48380241:+ chr13:48877880-49173572:+ chr13:48954377:+ BEST1 ENSG00000167995.17 protein_coding + + chr11:61950063-61965515:+ chr11:61964754:+ chr11:61717535-61732987:+ chr11:61732226:+ chr13:48381245 chr11:61964564 NA NA chr13:48955381 chr11:61732036 NA NA sense sense out-of-frame CDS/splice-site 3'UTR translocation medium none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(63%)| DUF3452(100%),RB_A(13%)|Ferritin(35%) 5 1 0 23 14992 ENST00000267163.6 ENST00000449131.6 downstream upstream mismatches(2) AAGAAAGTATACTGAAAAGAGTGAAGGATATAGGATACATCTTTAAAGAGAAATTTGCTAAAGCTGTGGGACAGGGTTGTGTCGAAATTGGATCACAG___CGATACAAACTTGGAGTTCGCTTGTATTACCGAGTAATGGAATCCATGCTTAAATCA___GAAGAAGAACGATTATCCATTCAAAATTTTAG___CAAACTTCTGAATGACAACATTTTTCATATGTCTTTATTGGCGTGCGCTCTTGAGGTTGTAATGGCCACATATAGCA|GGTGTGCTTGTCAAAGAGATATTCCGCCAAGCCAGATTCGGGCGCTCCCATCTTGCGCAAGTTGGTCACGTGGTCACCCAATTCTTTGATGGCTT ESILKRVKDIGYIFKEKFAKAVGQGCVEIGSQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYS|rcacqrdippsqiralpscaswsrghpil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 10414 ENSG00000226197::NFIB ENSG00000226197.4::ENSG00000147862.18 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1841 TRUE 719 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ NFIB ENSG00000147862.18 protein_coding - - chr9:14081843-14398983:- chr9:14125766:- chr9:14081842-14398982:- chr9:14125765:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |CTF/NF-I_family_transcription_modulation_region(65%) |CTF_NFI(43%) 0 2 0 11 119 ENST00000664438.1 ENST00000380934.8 downstream downstream none GTGAACGATCCAGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|ATATGTCTTCTCCGACTACTATGAAGAAGCCTGAAAAGCCATTGTTCAGCTCTGCATCTCCACAGGATTCTTCCCCAAGACTGAGCACTTTCCCCCAGCACCACC...CCTAACGGCAGTGGTCAAGTAGTAGGGAAAGTGCCTGGCCATTTCACTCCTGTCTTGGCACCCTCTCCCCATCCCAGTGCAGTGCGACCTGTGACCCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear factor I/B 1 adenoid cystic carcinoma, lipoma epithelial fusion translocation 10415 ENSG00000226197::NFIB ENSG00000226197.4::ENSG00000147862.18 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1841 TRUE 719 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ NFIB ENSG00000147862.18 protein_coding - - chr9:14081843-14398983:- chr9:14150265:- chr9:14081842-14398982:- chr9:14150264:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |CTF/NF-I_family_transcription_modulation_region(93%) |CTF_NFI(89%) 0 1 0 11 78 ENST00000664438.1 ENST00000380934.8 downstream downstream none AGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|CGCCCATAACCCAGGGAACTGGAGTCAACTTCCCAATTGGAGAAATCCCAAGCCAACCATACTATCATGACATGAACTCGGGGGTCAATCTTCAGAGGTCTCTGTCTTCTCCACCAAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear factor I/B 1 adenoid cystic carcinoma, lipoma epithelial fusion translocation 10433 ERC2::DENND6A ENSG00000187672.15::ENSG00000174839.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:56434998:- chr3:55542339-56503123:- chr3:56469026:- DENND6A ENSG00000174839.13 protein_coding - - chr3:57625454-57693077:- chr3:57680255:- chr3:57611181-57678804:- chr3:57665982:- NA NA NA NA NA NA NA NA sense sense unknown CDS intron duplication low none |Stabilization_of_polarity_axis(100%),Transport_protein_Avl9(88%) |Avl9(59%),SPA(100%) 0 0 5 64 4 ENST00000288221.11 unknown upstream downstream none GAAAG___ATCTCTGAGTGGAGTTATTTTCTGGTACGGACTGTGAAAAGAATGCGGTGAAAATTCTGGACAATCGTGGAAATATTAGCTCAAACCCCAACTTAATATAGCATTTCTTCTCTTCAGTAACACCTCATAATACAAGAAAAATGTATGGAA...|...TGTCATGTCTAAGAAAACATTGCgTAATTCAAG___GCTCACCTTGCCCCACTTCATCAGTGAGCAACAATGGACCATTGATGTGGAAGGTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10448 CREB3L2::SVOPL ENSG00000182158.16::ENSG00000157703.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:137882412:- chr7:137559725-137686832:- chr7:137567158:- SVOPL ENSG00000157703.16 protein_coding - - chr7:138594285-138701362:- chr7:138649137:- chr7:138279030-138386107:- chr7:138333882:- chr7:137880739,chr7:137880742 chr7:138650527,chr7:138650527 NA NA chr7:137565485,chr7:137565488 chr7:138335272,chr7:138335272 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none bZIP_transcription_factor(100%)|Major_Facilitator_Superfamily(53%),Sugar_(and_other)_transporter(93%) bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%)|MFS_1(47%),Sugar_tr(68%) 0 2 0 103 5 ENST00000330387.11 ENST00000674285.1 upstream downstream none CCAGCCTGGAGAAGTCAGTGCTTTTGGAGCTGCAGCAGCACCT|GTGTTCTGGCTTGCGGGCTCCCTGCTCATCATTGGCTTGGCCTCTGTGATCATCCCCACCATCGGGTGGCGCTGGCTCATTCGCGTCG...GTGGCCTTCAAG___TTTATTCCTGAATCTGCCCGGTTCAATGTCTCCACTGGGAACACTCGGGCTGCCCTGGCCACTCTGGAGCGCGTTGCCAAGATGAACCG SLEKSVLLELQQHl|csglrapcsslawpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10452 TRPC1::STAG1 ENSG00000144935.17::ENSG00000118007.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TRPC1 ENSG00000144935.17 protein_coding + + chr3:142724034-142807888:+ chr3:142724731:+ chr3:142442876-142526730:+ chr3:142443573:+ STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136377752:- chr3:136055078-136471245:- chr3:136096594:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low none none none 0 1 1 45 129 ENST00000698238.1 ENST00000383202.7 downstream downstream none GCCGCGATGATGGCGGCCCTGTACCCGAGCACGGACCTCTCGGGCGCCTCCTCCTCCTCCCTGCCTTCCTCTCCATCCTCTTCCTCGCCGAACGAGGTGAT...GGAGAATACGCTGAATGAGAAGCTTTTCTTGCTGGCGTGCGACAAGG|GAGGATTTGTTGGTATTGAGGAAAACGGTGAAATCCTTTTTGGCTGTTTGCCAGCAGTGCCTGTCTAATGTTAATACTCCAGTGAAAGAACAG___GCTTTCATGTTACTCTGTGATCTTCTGATGATTTTCA...TTCAGCCTTTGGTGTTtAATCCAGATACTGGACTCCAATCTGAACTCCTCAGTTTTGTGATGGATCACGTTTTTATTGACCAAGACGAGGAGAACCAGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense 10453 GIGYF2::DIS3L2 ENSG00000204120.16::ENSG00000144535.20 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GIGYF2 ENSG00000204120.16 protein_coding + + chr2:232697299-232860605:+ chr2:232697392:+ chr2:233562009-233725315:+ chr2:233562102:+ DIS3L2 ENSG00000144535.20 protein_coding + + chr2:231961245-232344350:+ chr2:232329813:+ chr2:232825955-233209060:+ chr2:233194523:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |DIS3-like_exonuclease_2_C_terminal(100%),RNB_domain(41%) |Dis3l2_C_term(100%),RNB(7%) 0 2 0 143 167 ENST00000373563.9 ENST00000325385.12 downstream upstream none TGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAG|GCTCGTGGAGGAGTTCATGCTCTTGGCCAACATGGCAGTGGCCCACAAGATCCACCGCGCCTTCCCCGAGCAGGCCCTGCTGCGCCGGCACCCCCCGCCCCAAACAAGGATGCTCAGTGACCTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 233613792 FALSE 232952197 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10460 TMEM59L::SSBP4 ENSG00000105696.9::ENSG00000130511.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM59L ENSG00000105696.9 protein_coding + + chr19:18607430-18621039:+ chr19:18618272:+ chr19:18718240-18731849:+ chr19:18729082:+ SSBP4 ENSG00000130511.16 protein_coding + + chr19:18418864-18434562:+ chr19:18430841:+ chr19:18529674-18545372:+ chr19:18541651:+ chr19:18618471,chr19:18618469 chr19:18430602,chr19:18430597 NA NA chr19:18729281,chr19:18729279 chr19:18541412,chr19:18541407 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Brain_specific_membrane_anchored_protein(88%)|Single-stranded_DNA_binding_protein__SSDP(95%) BSMAP(96%)|SSDP(50%) 0 1 1 136 409 ENST00000600490.5 ENST00000270061.12 downstream upstream none CAAGGCCAAGGTGGAGTCTGAAGAGCCACAGGACAATGACTTCCTCAGTTGCATGTCCCG|AGTGCTGCAGCCGCCCCCAGCCCCGTTATGGGGAGTATGGCCCCAGGTGACACAATGGCCGCAGGCTCCATGGCGGCTGGCTTCTTCCAG___GGCCCCCCCGGCTCCCAGCCGTCCCCCCACAACCCCAACGCCCCCATGATGGGGCCTCACGGTCAG KAKVESEEPQDNDFLSCMSr|vlqpppaplwgvwpqvtqwpqapwrlassrappapsrppttptpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10461 SCFD2::FIP1L1 ENSG00000184178.17::ENSG00000145216.17 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53145333:- chr4:53739149-54232233:- chr4:54011500:- FIP1L1 ENSG00000145216.17 protein_coding + + chr4:53377569-53464382:+ chr4:53442653:+ chr4:54243736-54330549:+ chr4:54308820:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Sec1_family(49%)| Sec1(32%)|PDZ(100%),PDZ_6(100%) 1 0 1 357 1005 ENST00000401642.8 ENST00000703451.1 upstream upstream none CAGCAATGTCCGTTGTGTTAAATCAGCTGCTGCCCATGATTAAGCCTGTAACCCAGAGAACCAACGAGGACTACAGCCCTGAGGAACTGCTGATCCTTCTCcTATATATTTATTCT...GCTGCAAAAAATTACGG|GTTTTCCTCCTCCACCAGGCGCTCCACCTCCATCTCTTATACCAACAATAGAAAG___TGGACATTCCTCTGGTTATGATAGTCGT LQKIT|gFPPPPGAPPPSLIPTIESGHSSGYDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 54218765|54218765 FALSE|FALSE 54292039|54280782 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE FIP1 like 1 (S. cerevisiae) 1 idiopathic hypereosinophilic syndrome leukaemia_lymphoma fusion translocation 10466 ZNF804A::NCKAP1 ENSG00000170396.9::ENSG00000061676.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF804A ENSG00000170396.9 protein_coding + + chr2:184598529-184939492:+ chr2:184599070:+ chr2:185463256-185804219:+ chr2:185463797:+ NCKAP1 ENSG00000061676.16 protein_coding - - chr2:182909115-183038858:- chr2:182942163:- chr2:183773843-183903586:- chr2:183806891:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Nck-associated_protein_1(22%) |Nckap1(14%) 0 1 0 46 478 ENST00000302277.7 ENST00000361354.9 downstream downstream none CTTTCGCAACATCAAGGGAGTTTTCCGGGGCCCTCTCAGCAAGAACGGGAACAAAACTCTG|AAACTTGTGGTGGAGAATGTTGATGTGTTAACACAAATGA...AGCACTTAGAGAT___GTCTTATCCTACCACATTCCTTTTCTTGTAAGTTCAATTGAAGATTTTAAGGATCACATTCCAAGGGAAACTGATATGAAG___GTTGCAA FRNIKGVFRGPLSKNGNKTL|KLVVENVDVLTQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10468 EXOC4::CHCHD3 ENSG00000131558.15::ENSG00000106554.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1848 FALSE NA EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133275171:+ chr7:132937829-133751342:+ chr7:132959926:+ CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:132785660:- chr7:132469631-132766850:- chr7:132470421:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Sec8_exocyst_complex_component_specific_domain(48%)| Sec8_exocyst(1%)| 1 0 0 295 894 ENST00000253861.5 ENST00000262570.10 downstream downstream none GGGAAATACAGAAGCACAGTCAGCAAAAGCAAAGACCCCTCGGGGCTGCTCATCTCTGTGATCAG___GACTCTGTCTACTAGTGACGATGTCGAAGACAGGGA...CACATACCAGAGCATCACAGAGCGCATCACTAACTCCCGAAATAAAATAAAGCAG|AGCATGCTTGAGAAGGGAGGATAAAAACTTTCAGAATGAGCAAAAC TYQSITERITNSRNKIKQ|SMLEKGG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 133059756 FALSE 132754989 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10470 ENSG00000253642::ENSG00000253363 ENSG00000253642.6::ENSG00000253363.7 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:33796436:+ chr8:33462374-33896622:+ chr8:33653954:+ ENSG00000253363 ENSG00000253363.7 lncRNA - - chr8:36378069-36779209:- chr8:36427064:- chr8:36235587-36636727:- chr8:36284582:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 283 49 ENST00000523063.5 ENST00000656455.1 downstream downstream none GAAGAGGCCTATCAAGGAAAGAAGGCTCTTTATTTGCTTTGCTGTCATGGTATCCTTCCCATTCCACTGGCTTCCAGCACATATGTG|AAAAATTCAAACCCCTATTGCCGGCTTTGAAAATGGAAGAAGAATGCCCTGATTCAAGGAATGTAGTGGCCTCTAGCATTTGGCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10476 LRBA::SH3D19 ENSG00000198589.15::ENSG00000109686.20 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1042 FALSE NA FALSE NA LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150905838:- chr4:151185587-151936879:- chr4:151826990:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151122207:- chr4:152023903-152246757:- chr4:152043359:- chr4:150901701 chr4:151124066 NA NA chr4:151822853 chr4:152045218 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Concanavalin_A-like_lectin/glucanases_superfamily(100%),Neurobeachin/BDCP__DUF4704_alpha_solenoid_region(51%)|Variant_SH3_domain(32%) DUF4704(18%),Laminin_G_3(100%)|Ribosomal_S3Ae(100%),SH3_1(1%),SH3_2(1%),SH3_9(1%) 16 19 21 130 485 ENST00000357115.9 ENST00000604030.7 upstream downstream duplicates(2),mismatches(3) CTCAATTGCTATGCAGGAACAGATGCTTGCCTGTAAGGGCTTCTTGGTAATAGGATATAGCCTTGAAAAG___TCTTCCAAATCTCATGTTAGCAGAGCAGTACTTGAACTTTGCCTTGCATTTTCAAAATATCTGAGTAATCTGCAGAATGGGATGCCCCTGCTCAAGCAATTGTGTGATCACGTTCTTCTTAATCCTGCCATATGGATTCATACCCCAGCCAAG|GCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAGAGGAGAAGCTTGTCTGTGTTCCTTGGCACAAGAACTCACTTGAACTATCACCTTGACTATCAGATATGTTTTTGCACTATTTTTTTTAACTGAAAAAGAAATATCTAAGCTGTACATGGTACACTAGAATTTTCTGAAAGCAGAAAACGTTCA SIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAK|AGDIITELESVDDDWMSGELMGKSGIFPKNYIQFLQIS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Acute Myeloid Leukemia,Head and Neck squamous cell carcinoma,Colon adenocarcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HEAD_AND_NECK,COLON,BLADDER,BLADDER inexact 151935579,151682935,151935579,151682935,151656410,151842350 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 152060999,152070713,152070713,152070713,152147238,152096826 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES,YES,YES In-frame,Out-of-frame,In-frame,Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10477 GPR39::C2orf27A ENSG00000183840.8::ENSG00000287151.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1850 TRUE 720 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132416951:+ chr2:133174378-133404155:+ chr2:133174524:+ C2orf27A ENSG00000287151.1 lncRNA + + chr2:131647990-131767404:+ chr2:131750633:+ chr2:132405563-132524977:+ chr2:132508206:+ chr2:132475438,chr2:132476314,chr2:132476314,chr2:132476314,chr2:132475437 chr2:131733131,chr2:131733655,chr2:131733649,chr2:131733667,chr2:131733122 NA NA chr2:133233011,chr2:133233887,chr2:133233887,chr2:133233887,chr2:133233010 chr2:132490704,chr2:132491228,chr2:132491222,chr2:132491240,chr2:132490695 NA NA sense sense unknown 5'UTR exon/splice-site duplication high none none none 6 25 7 336 53 ENST00000329321.4 ENST00000657415.1 downstream upstream duplicates(2),mismatches(3) CCTGGGCCTCTCCTAGGTTGGGCTGCTCCAGCAAGTTTCCATGAAAGCACCTGAAATACTAAGTTACCTTCGCGAGGAGAACTCGAGTGAGATAAAATCGTGCGCCCACGCAG|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCTTTTTCCACTGTTTCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10478 GPR39::C2orf27A ENSG00000183840.8::ENSG00000287151.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1850 TRUE 720 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ C2orf27A ENSG00000287151.1 lncRNA + + chr2:131647990-131767404:+ chr2:131750633:+ chr2:132405563-132524977:+ chr2:132508206:+ chr2:132475438,chr2:132476314,chr2:132476314,chr2:132476314,chr2:132475437 chr2:131733131,chr2:131733655,chr2:131733649,chr2:131733667,chr2:131733122 NA NA chr2:133233011,chr2:133233887,chr2:133233887,chr2:133233887,chr2:133233010 chr2:132490704,chr2:132491228,chr2:132491222,chr2:132491240,chr2:132490695 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none 7_transmembrane_receptor_(rhodopsin_family)(79%)| 7tm_1(0%)| 3 4 15 174 53 ENST00000329321.4 ENST00000657415.1 downstream upstream mismatches(6) CCTGGTGAACGTGCCCAGCCACCGGGGTCTCACTTGCAACCGCTCCAGCACCCGCCACCACGAGCAGCCCGAGACCTCCAATATGTCCATCTGTACCAACCTCTCCAGCCGCTGGACCGTGTTCCAGTCCAGCATCTTCGGCGCCTTCGTGGTCTACCTCGTGGTCCTGCTCTCCGTAGCCTTCATGTGCTGGAACATGATGCAGGTGCTCATGAAAAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCATCATCTTCCTGA|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCTTTTTCCACTGTTTCCCCAATTGGATAATCGGCAGCTCAATGACAG LVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFL|kylqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10479 CISD3::PCGF2 ENSG00000277972.2::ENSG00000277258.5 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1851 TRUE 721 CISD3 ENSG00000277972.2 protein_coding + + chr17:38730341-38735605:+ chr17:38733535:+ chr17:36886594-36891858:+ chr17:36889788:+ PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38739682:- chr17:36890151-36906070:- chr17:36895935:- NA NA NA NA NA NA NA NA sense sense stop-codon 3'UTR CDS/splice-site inversion high none Iron-binding_zinc_finger_CDGSH_type(100%)|RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(100%),Zinc_finger__C3HC4_type_(RING_finger)(46%) zf-CDGSH(100%)|RAWUL(100%),zf-C3HC4(7%),zf-C3HC4_2(7%),zf-RING_2(7%),zf-RING_UBOX(6%) 16 13 5 424 236 ENST00000613478.2 ENST00000616199.4 downstream downstream low_entropy(1),mismatches(10) GCCGCAGCAAGAAGCAG___CCCTTCTGTGACGGCTCCCACTTCTTCCAACGCACTGGCCTATCTCCACTCAAGTTCAAGGCCCAAGAGACCCGCATGGTGGCACTCTGTACCTGCAAGGCCACTCAGAGGCCCCCGTACTGCGATGGCACCCACAGGAGTGAGCGCGTGCAGAAGGCAGAAGTGGGCTCCCCACTCTGAGGGGGCTGCTGCTGTCCAGCCACAGGTGGCCTTGGCTCCAGGCCTCTGACAGGCACCCCCTTCTGTGGGAAAGGAAACAG|TCTGCAAAACCTGCATCGTGCGCTACCTGGAGACCAACAAATACTGCCCCATGTGTGACGTGCAGGTCCATAAAACCCGGCCGCTGCTGAGCATCAG___GTCTGACAAAACACTTCAAGACATTGTCTACAAATTGGTCCCTGGGCTTTTTAAAGGTATCTGCACTCCATTCCTCCTCCACTGACCCCATTTCCCAACCCATGGCCCTGTCCTCATCCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10480 CISD3::PCGF2 ENSG00000277972.2::ENSG00000277258.5 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1851 TRUE 721 CISD3 ENSG00000277972.2 protein_coding + + chr17:38730341-38735605:+ chr17:38731439:+ chr17:36886594-36891858:+ chr17:36887692:+ PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38739682:- chr17:36890151-36906070:- chr17:36895935:- chr17:38733770,chr17:38733768 chr17:38739837,chr17:38739839 NA NA chr17:36890023,chr17:36890021 chr17:36896090,chr17:36896092 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none Iron-binding_zinc_finger_CDGSH_type(31%)|RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(100%),Zinc_finger__C3HC4_type_(RING_finger)(46%) zf-CDGSH(2%)|RAWUL(100%),zf-C3HC4(7%),zf-C3HC4_2(7%),zf-RING_2(7%),zf-RING_UBOX(6%) 2 1 2 951 236 ENST00000619858.1 ENST00000616199.4 downstream downstream duplicates(1),mismatches(1) CCCTTCAGCCCTGTCACCTCCTCCTTCCTAGATGGCCTCCCGTGTCCTTCCCTTTCCACTGATTTTATTTTTCCGTTTCCAAACCACCGTCTTGTGATGCCTGCCATGCTTGCGTACCTTGCAGGACCTGAACCCGCGGCGGGACATCTCCTCCTGGCTG___GCCCAGTGGTTCCCTAGAACCCCAGCCAGGTCCGTGGTGGCCCTGAAGACCCCCATCAAGGTGGAGCTGGTGGCAGGGAAAACCTACAGGTGGTGTGTGTGTGGCCGCAGCAAGAAGCAG|TCTGCAAAACCTGCATCGTGCGCTACCTGGAGACCAACAAATACTGCCCCATGTGTGACGTGCAGGTCCATAAAACCCGGCCGCTGCTGAGCATCAG___GTCTGACAAAACACTTCAAGACATTGTCTACAAATTGGTCCCTGGGCTTTTTAAAGGTATCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10481 CISD3::PCGF2 ENSG00000277972.2::ENSG00000277258.5 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1851 TRUE 721 CISD3 ENSG00000277972.2 protein_coding + + chr17:38730341-38735605:+ chr17:38731439:+ chr17:36886594-36891858:+ chr17:36887692:+ PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38739253:- chr17:36890151-36906070:- chr17:36895506:- chr17:38733770,chr17:38733768 chr17:38739837,chr17:38739839 NA NA chr17:36890023,chr17:36890021 chr17:36896090,chr17:36896092 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Iron-binding_zinc_finger_CDGSH_type(31%)|RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(100%) zf-CDGSH(2%)|RAWUL(100%) 1 0 0 951 272 ENST00000613478.2 ENST00000616199.4 downstream downstream none ACCCCAGCCAGGTCCGTGGTGGCCCTGAAGACCCCCATCAAGGTGGAGCTGGTGGCAGGGAAAACCTACAGGTGGTGTGTGTGTGGCCGCAGCAAGAAGCAG|GTCTGACAAAACACTTCAAGACATTGTCTACAAATTGGTCCCTGGG TPARSVVALKTPIKVELVAGKTYRWCVCGRSKKQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10482 GPR39::NBEAP2 ENSG00000183840.8::ENSG00000197927.14 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1852 TRUE 722 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132416951:+ chr2:133174378-133404155:+ chr2:133174524:+ NBEAP2 ENSG00000197927.14 transcribed_unprocessed_pseudogene + + chr2:131722417-131751584:+ chr2:131750633:+ chr2:132479990-132509157:+ chr2:132508206:+ chr2:132475438,chr2:132476314,chr2:132476314,chr2:132476314,chr2:132475437 chr2:131733131,chr2:131733655,chr2:131733649,chr2:131733667,chr2:131733122 NA NA chr2:133233011,chr2:133233887,chr2:133233887,chr2:133233887,chr2:133233010 chr2:132490704,chr2:132491228,chr2:132491222,chr2:132491240,chr2:132490695 NA NA sense sense unknown 5'UTR exon/splice-site duplication high none none none 6 22 5 336 53 ENST00000329321.4 ENST00000623058.3 downstream upstream duplicates(2),mismatches(3) CCTGGGCCTCTCCTAGGTTGGGCTGCTCCAGCAAGTTTCCATGAAAGCACCTGAAATACTAAGTTACCTTCGCGAGGAGAACTCGAGTGAGATAAAATCGTGCGCCCACGCAG|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10483 GPR39::NBEAP2 ENSG00000183840.8::ENSG00000197927.14 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1852 TRUE 722 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ NBEAP2 ENSG00000197927.14 transcribed_unprocessed_pseudogene + + chr2:131722417-131751584:+ chr2:131750633:+ chr2:132479990-132509157:+ chr2:132508206:+ chr2:132475438,chr2:132476314,chr2:132476314,chr2:132476314,chr2:132475437 chr2:131733131,chr2:131733655,chr2:131733649,chr2:131733667,chr2:131733122 NA NA chr2:133233011,chr2:133233887,chr2:133233887,chr2:133233887,chr2:133233010 chr2:132490704,chr2:132491228,chr2:132491222,chr2:132491240,chr2:132490695 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none 7_transmembrane_receptor_(rhodopsin_family)(79%)| 7tm_1(0%)| 3 4 12 174 53 ENST00000329321.4 ENST00000623058.3 downstream upstream mismatches(5) CCTGGTGAACGTGCCCAGCCACCGGGGTCTCACTTGCAACCGCTCCAGCACCCGCCACCACGAGCAGCCCGAGACCTCCAATATGTCCATCTGTACCAACCTCTCCAGCCGCTGGACCGTGTTCCAGTCCAGCATCTTCGGCGCCTTCGTGGTCTACCTCGTGGTCCTGCTCTCCGTAGCCTTCATGTGCTGGAACATGATGCAGGTGCTCATGAAAAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCATCATCTTCCTGA|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCTTTTTCCACTGTTTCCCCAATTGGATAATCGGCAGCTCAATGACAG LVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFL|kylqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10484 GPR39::ENSG00000290616 ENSG00000183840.8::ENSG00000290616.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 1043 TRUE 1853 TRUE 723 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132416951:+ chr2:133174378-133404155:+ chr2:133174524:+ ENSG00000290616 ENSG00000290616.1 lncRNA + + chr2:131733656-131751669:+ chr2:131750633:+ chr2:132491229-132509242:+ chr2:132508206:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR exon/splice-site duplication high none none none 6 22 5 336 53 ENST00000329321.4 ENST00000463645.1 downstream upstream duplicates(2),mismatches(3) CCTGGGCCTCTCCTAGGTTGGGCTGCTCCAGCAAGTTTCCATGAAAGCACCTGAAATACTAAGTTACCTTCGCGAGGAGAACTCGAGTGAGATAAAATCGTGCGCCCACGCAG|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10485 GPR39::ENSG00000290616 ENSG00000183840.8::ENSG00000290616.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1853 TRUE 723 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ ENSG00000290616 ENSG00000290616.1 lncRNA + + chr2:131733656-131751669:+ chr2:131750633:+ chr2:132491229-132509242:+ chr2:132508206:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none 7_transmembrane_receptor_(rhodopsin_family)(79%)| 7tm_1(0%)| 3 4 12 174 53 ENST00000329321.4 ENST00000463645.1 downstream upstream mismatches(5) CCTGGTGAACGTGCCCAGCCACCGGGGTCTCACTTGCAACCGCTCCAGCACCCGCCACCACGAGCAGCCCGAGACCTCCAATATGTCCATCTGTACCAACCTCTCCAGCCGCTGGACCGTGTTCCAGTCCAGCATCTTCGGCGCCTTCGTGGTCTACCTCGTGGTCCTGCTCTCCGTAGCCTTCATGTGCTGGAACATGATGCAGGTGCTCATGAAAAGCCAGAAGGGCTCGCTGGCCGGGGGCACGCGGCCTCCGCAGCTGAGGAAGTCCGAGAGCGAAGAGAGCAGGACCGCCAGGAGGCAGACCATCATCTTCCTGA|AGTACCTTCAAGTTTAAATCTGAGAGTGATATTCATTTGGCAGAACATCATAAACAGGTTTTGTATGATGGGAAACTTGCAAGTAGCATTACCTTTACATATACTGCTAAGGCCACTGATGCTCAACTCTGCCTGGAATCATCACCAAAAGAGAATGCATCAATTTTTGTGCATTCCCAACATGCTCTAATGCTTCAG___ATTCAAGTGCTTTTTCCACTGTTTCCCCAATTGGATAATCGGCAGCTCAATGACAG LVNVPSHRGLTCNRSSTRHHEQPETSNMSICTNLSSRWTVFQSSIFGAFVVYLVVLLSVAFMCWNMMQVLMKSQKGSLAGGTRPPQLRKSESEESRTARRQTIIFL|kylqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10488 FOXP1::LINC00877 ENSG00000114861.24::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1044 TRUE 1854 TRUE 724 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71299820:- chr3:71003844-71633129:- chr3:71348971:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72100010:- chr3:71992743-72328654:- chr3:72149161:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 3 14 5 45 32 ENST00000318789.11 ENST00000626474.3 upstream downstream duplicates(1),mismappers(2),mismatches(2) ACACGTTAAAATTTCAGG___GGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAG|GCAGATGAGAGTGGAGGTTGTAAATCACCCTCCATGCAATGGTTCATCATAAAGGATATGGAGCAAAATTAGAGGAGGCACGAGAAGGAAAGCCGGTGATGAACAAG___GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGCAAAGCAGACACATGGAGATTTTGAGACTGAGAAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1284 chr3:71541970-71542089:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10489 FOXP1::LINC00877 ENSG00000114861.24::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1854 TRUE 724 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71359150:- chr3:71003844-71633129:- chr3:71408301:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72100010:- chr3:71992743-72328654:- chr3:72149161:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 0 4 46 32 ENST00000318789.11 ENST00000626474.3 upstream downstream mismatches(1) AAACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTGCTAGCCAAAAGG___CTTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGACACGTTAAAATTTCAGG|GCAGATGAGAGTGGAGGTTGTAAATCACCCTCCATGCAATGGTTCATCATAAAGGATATGGAGCAAAATTAGAGGAGGCACGAGAAGGAAAGCCGGTGATGAACAAG___GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1284 chr3:71541970-71542089:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10490 FOXP1::LINC00877 ENSG00000114861.24::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1854 TRUE 724 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71299820:- chr3:71003844-71633129:- chr3:71348971:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72061094:- chr3:71992743-72328654:- chr3:72110245:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 1 2 45 43 ENST00000318789.11 ENST00000626474.3 upstream downstream mismatches(1) GTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAG|GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGCAAAGCAGACACATGGAGATTTTGAGACTGAGAAGAGGAAAACTGAGGACATTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1284 chr3:71541970-71542089:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10491 ENSG00000285708::LINC00877 ENSG00000285708.1::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1855 TRUE 725 ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71299820:- chr3:71008377-71803380:- chr3:71348971:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72100010:- chr3:71992743-72328654:- chr3:72149161:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site duplication high none none IF4E(100%)| 3 14 5 45 32 ENST00000650123.1 ENST00000626474.3 upstream downstream duplicates(1),mismappers(2),mismatches(2) ACACGTTAAAATTTCAGG___GGTAAGACGTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAG|GCAGATGAGAGTGGAGGTTGTAAATCACCCTCCATGCAATGGTTCATCATAAAGGATATGGAGCAAAATTAGAGGAGGCACGAGAAGGAAAGCCGGTGATGAACAAG___GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGCAAAGCAGACACATGGAGATTTTGAGACTGAGAAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10492 ENSG00000285708::LINC00877 ENSG00000285708.1::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1855 TRUE 725 ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71359150:- chr3:71008377-71803380:- chr3:71408301:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72100010:- chr3:71992743-72328654:- chr3:72149161:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site duplication high none none IF4E(100%)| 1 0 4 46 32 ENST00000647725.1 ENST00000626474.3 upstream downstream mismatches(1) AAACATTTCGGCAATGGTGAGGGCTTCGATCCCTTCTCTGATTTGCTGTCAGCCATGAACGGATGGATGTGATGCCTGCTAGCCAAAAGG___CTTCCCTCTGTGTGTTGCAGTCCTGTGGCATTATGCATGCCCCCTCCCAGTGACCCCAGGCTTTTTATGGCTGTGAGACACGTTAAAATTTCAGG|GCAGATGAGAGTGGAGGTTGTAAATCACCCTCCATGCAATGGTTCATCATAAAGGATATGGAGCAAAATTAGAGGAGGCACGAGAAGGAAAGCCGGTGATGAACAAG___GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10493 ENSG00000285708::LINC00877 ENSG00000285708.1::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1855 TRUE 725 ENSG00000285708 ENSG00000285708.1 protein_coding - - chr3:70959226-71754229:- chr3:71299820:- chr3:71008377-71803380:- chr3:71348971:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72061094:- chr3:71992743-72328654:- chr3:72110245:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site duplication high none none IF4E(100%)| 0 1 2 45 43 ENST00000647725.1 ENST00000626474.3 upstream downstream mismatches(1) GTGACCTTTTGAGGTGACTATAACTGAAGATTGCTTTACAGAAGCCAAAAAAG|GAAAGTGCCTGGTTGAAGCTAGCTTGCAATCCCAAAGTCAGAAGGTTGCCTGGGAAGCCATGAAACAAAGCCAAATCAAGGCAAAGCAGACACATGGAGATTTTGAGACTGAGAAGAGGAAAACTGAGGACATTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10495 CDC45::HIRA ENSG00000093009.11::ENSG00000100084.14 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC45 ENSG00000093009.11 protein_coding + + chr22:19479457-19520612:+ chr22:19516893:+ chr22:19466980-19508135:+ chr22:19504416:+ HIRA ENSG00000100084.14 protein_coding - + chr22:19330698-19447450:- chr22:19412114:+ chr22:19318221-19434973:- chr22:19399637:+ chr22:19517215,chr22:19517214 chr22:19410763,chr22:19410759 NA NA chr22:19504738,chr22:19504737 chr22:19398286,chr22:19398282 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none CDC45-like_protein(97%)| CDC45(94%)| 6 3 6 323 17 ENST00000407835.6 unknown downstream upstream duplicates(1) ACCGTGGTGGGCATCCCCCCAGAGACCGACAGCTCGGACAGGAAGAA___CTTTTTTGGGAGGGCGTTTGAGAAGGCAGCGGAAAGCACCAGCTCCCGGATGCTGCACAACCATTTTGACCTCTCAG|TTCCAGGTGTAGGCCTTAAGAGTCTAGCAGTTCAACTTTGGCTCTCTGGAGAAACCTAGTTGTCATGTGAGAAGTCCAAGTACCCTGAGACCACCATGTTTTGAAGAGGCCCAAGCTGGCCACATGTAGAGCATCAAAG TVVGIPPETDSSDRKNFFGRAFEKAAESTSSRMLHNHFDLS|vpgvglkslavqlwlsget* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10509 COG8::SF3B3 ENSG00000213380.16::ENSG00000189091.13 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1858 TRUE 726 COG8 ENSG00000213380.16 protein_coding - - chr16:69320140-69339583:- chr16:69332714:- chr16:69354043-69373486:- chr16:69366617:- SF3B3 ENSG00000189091.13 protein_coding + + chr16:70523791-70577670:+ chr16:70548370:+ chr16:70557694-70611573:+ chr16:70582273:+ chr16:69331165 chr16:70547891 NA NA chr16:69365068 chr16:70581794 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Dor1-like_family_(100%)|CPSF_A_subunit_region(100%),Mono-functional_DNA-alkylating_methyl_methanesulfonate_N-term(28%) Dor1(100%),EMP24_GP25L(100%)|CPSF_A(100%),MMS1_N(28%) 2 0 3 48 687 ENST00000306875.10 ENST00000302516.10 upstream upstream duplicates(1) TTGGAAGATGCCCTTGCCAAG___GTAACTAAAATAATCCTGGCCTTCCATCGCGCTGAAGAGGCTGCCTTCAGCAGCGGGGAGCAAGAGCTCTTTGTCCAGTTCTGCACTGTCTTCCT...AAGTCCTTTTTCCACCAGCTCAGATAGCACAGACTTTAG|GTGTCAGAAATGGCTGTTTCTGAGCTACCTGGTAACCCCAACGCTGTCTGGACAGTGCGTCGACACATTGAAG___ATGAGTTTGATGCCTACATCATTGTGTCTTTCGTGAATGCCACCCTAGTGTTGTCCATTGGAGAAACTGTAGAAGAAGTGACTGAC VLFPPAQIAQTL|gvrngcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10510 COG8::SF3B3 ENSG00000213380.16::ENSG00000189091.13 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1858 TRUE 726 COG8 ENSG00000213380.16 protein_coding - - chr16:69320140-69339583:- chr16:69334521:- chr16:69354043-69373486:- chr16:69368424:- SF3B3 ENSG00000189091.13 protein_coding + + chr16:70523791-70577670:+ chr16:70548370:+ chr16:70557694-70611573:+ chr16:70582273:+ chr16:69331165 chr16:70547891 NA NA chr16:69365068 chr16:70581794 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Dor1-like_family_(100%)|CPSF_A_subunit_region(100%),Mono-functional_DNA-alkylating_methyl_methanesulfonate_N-term(28%) Dor1(100%),EMP24_GP25L(100%)|CPSF_A(100%),MMS1_N(28%) 1 1 3 59 687 ENST00000306875.10 ENST00000302516.10 upstream upstream none TTCAGGAAACAGTGGAGAAATTCCAGGAAGAAATGAACTCCTACATGCTCATCTCGGCTCCAGCCATCCTGGGCACCAGTAACATGCCTGCTGCTGTGCCAGCCACCCAGCCGGGGACGCTGCAGCCACCCATGGTGCTCCTAGATTTCCCACCCCTCGCCTGCTTTCTCAACAATATTCTGGTTGCCTTCAATGATCTGCGCCTCTGCTGCCCTGTGGCCCTGGCGCAGGATGTGACTGGGGCCTTGGAAGATGCCCTTGCCAAG|GTGTCAGAAATGGCTGTTTCTGAGCTACCTGGTAACCCCAACGCTGTCTGGACAGTGCGTCGACACATTGAAG___ATGAGTTTGATGCCTACATCATTGTGTCTTTCGTGAATGCCACCCTAGTGTTGTCCATTGGAGAAACTGTAGAAGAAGTGACTGAC QETVEKFQEEMNSYMLISAPAILGTSNMPAAVPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLCCPVALAQDVTGALEDALAK|VSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10511 ENSG00000272617::SF3B3 ENSG00000272617.3::ENSG00000189091.13 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000272617 ENSG00000272617.3 protein_coding - - chr16:69328644-69334871:- chr16:69334521:- chr16:69362547-69368774:- chr16:69368424:- SF3B3 ENSG00000189091.13 protein_coding + + chr16:70523791-70577670:+ chr16:70548370:+ chr16:70557694-70611573:+ chr16:70582273:+ chr16:69331165 chr16:70547891 NA NA chr16:69365068 chr16:70581794 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none Dor1-like_family_(100%)|CPSF_A_subunit_region(100%),Mono-functional_DNA-alkylating_methyl_methanesulfonate_N-term(28%) |CPSF_A(100%),MMS1_N(28%) 1 1 2 59 687 ENST00000562949.1 ENST00000302516.10 upstream upstream none TTCAGGAAACAGTGGAGAAATTCCAGGAAGAAATGAACTCCTACATGCTCATCTCGGCTCCAGCCATCCTGGGCACCAGTAACATGCCTGCTGCTGTGCCAGCCACCCAGCCGGGGACGCTGCAGCCACCCATGGTGCTCCTAGATTTCCCACCCCTCGCCTGCTTTCTCAACAATATTCTGGTTGCCTTCAATGATCTGCGCCTCTGCTGCCCTGTGGCCCTGGCGCAGGATGTGACTGGGGCCTTGGAAGATGCCCTTGCCAAG|GTGTCAGAAATGGCTGTTTCTGAGCTACCTGGTAACCCCAACGCTGTCTGGACAGTGCGTCGACACATTGAAG___ATGAGTTTGATGCCTACATCATTGTGTCTTTCGTGAATGCCACCCTAGTGTTGTCCATTGGAGAAACTGTAGAAGAAGTGACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10526 RPH3AL::KCNK15-AS1 ENSG00000181031.16::ENSG00000244558.6 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1860 TRUE 727 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:352712:- chr17:62180-236045:- chr17:202503:- KCNK15-AS1 ENSG00000244558.6 lncRNA - - chr20:44694892-44746021:- chr20:44716793:- chr20:43323533-43374662:- chr20:43345434:- chr17:352083,chr17:352085 chr20:44734062,chr20:44734062 NA NA chr17:201874,chr17:201876 chr20:43362703,chr20:43362703 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 72 10 ENST00000323434.12 ENST00000427598.5 upstream downstream mismatches(1) GCCTCCTCCTCCCTGGTGGGGCCTGTCTGGGTGAAGCCCCTCTGTTCCCG|GTGTCTGCCTCCTGCCCCGGTCCACAGCCAGGAGCCCCGGAGCCAACGGCCAGCCTGGAAGACTTACAGTTCTCCCTCTGAGGGTTGCTGTGGCTTTCCATGTTGTGGTGACTAAGTCCCTGTGTTTCTGTGCAGTCCCTGCTTCCTGGGACCAGGGAAGAATGGTCCC___GTGGCCACCAGACTTTCTCTGCaTGTATCCTCCCAGGACCACAGAAaTCATCGCATCCaAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10527 RPH3AL::KCNK15-AS1 ENSG00000181031.16::ENSG00000244558.6 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1860 TRUE 727 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:386197:- chr17:62180-236045:- chr17:235988:- KCNK15-AS1 ENSG00000244558.6 lncRNA - - chr20:44694892-44746021:- chr20:44716793:- chr20:43323533-43374662:- chr20:43345434:- chr17:352083,chr17:352085 chr20:44734062,chr20:44734062 NA NA chr17:201874,chr17:201876 chr20:43362703,chr20:43362703 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 2 10 ENST00000573780.5 ENST00000427598.5 upstream downstream none GCGCGGGCTGCGGGGCCGAACCCCGG|GTGTCTGCCTCCTGCCCCGGTCCACAGCCAGGAGCCCCGGAGCCAACGGCCAGCCTGGAAGACTTACAGTTCTCC...TGAGGGTTGCTGTGGCTTTCCATGTTGTGGTGACTAAGTCCCTGTGTTTCTGTGCAGTCCCTGCTTCCTGGGACCAGGGAAGAATGGTCCC___TCAGTAATAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10529 LINC01320::FAM98A ENSG00000228262.11::ENSG00000119812.20 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01320 ENSG00000228262.11 lncRNA + + chr2:33706886-34738231:+ chr2:33706953:+ chr2:33931953-34963298:+ chr2:33932020:+ FAM98A ENSG00000119812.20 protein_coding - + chr2:33532744-33599347:- chr2:33584897:+ chr2:33757811-33824414:- chr2:33809964:+ chr2:33766626 chr2:33570000 NA NA chr2:33991693 chr2:33795067 NA NA sense antisense unknown exon/splice-site CDS duplication/5'-5' high none none none 19 302 8 477 1715 ENST00000366209.6 unknown downstream upstream duplicates(35),inconsistently_clipped(1),low_entropy(5),mismatches(11) GCCACCACGTAAGAAGTGCCTTTTGCCTCCCACCATTATTCTGAGGCCTCCTCAGCCATGTGGAACT|CCTCCTCCCTGGCCTGCACGACCACCTCGGCCTCCACGACCACCTCGCCCACCACGACCACCACCACGATCACCATGGTGCCCGCCATCTTGGTATCTATTGTCCTGCTGGTAGCCACCACCCTGGTATCCACTTCCTGTATATGAAGAAGATGTTTGGAAGCCACCATAACCTCCGCCTTGATAGCCACCACTGCTGTGGCCACCATGATAGCCACCTGGCTGGAAACCTGAATCTCGATAACCACCATCTTGGTAGCCACCTCCTCCACCACTCCCTCCATCTGTCCAGCCTCCTTGATGCTTATTTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10530 NME2::TNRC6C ENSG00000243678.12::ENSG00000078687.18 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NME2 ENSG00000243678.12 protein_coding + + chr17:51165435-51171744:+ chr17:51166956:+ chr17:49242796-49249105:+ chr17:49244317:+ TNRC6C ENSG00000078687.18 protein_coding + - chr17:77958703-78108822:+ chr17:78044070:- chr17:75954785-76104903:+ chr17:76040151:- chr17:51168134 chr17:78048591 NA NA chr17:49245495 chr17:76044672 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Nucleoside_diphosphate_kinase(28%)| NDK(65%)| 68 48 114 13781 106 ENST00000512737.6 unknown downstream downstream duplicates(9),low_entropy(1),mismatches(6) TCCCGGGTGTGGTGGTCGCtCCAGCTCTCTGCTCTCCCAGCGCAGCGCCGCCGCCCGGCCCCTCCAGCTTCCCG___GACCATGGCCAACCTGGAGCGCACCTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTGGCCATGAAGTTCCTCCGG|GTATATACCCAAAAGAAAGGAGATCAGTATATTGAAGAGAGAGCTTCGATGTTTGCTGCAGCACTACTCACAACAACCAAGATTTGGAAGCAACCTATGTGTCCATAAACAGATGAATAAAGAAAATATGGCAGATATACACAATGGAATACTGTTCAGCCATAAAAAGAATAAGATCCTGTCATTTGCAACAACATGGATGGAACTGGAGGTCACTATGTTAATTAAAATAAGCCAGGCACATGAAGACAAGC MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLR|vytqkkgdqyieerasmfaaalltttkiwkqpmcp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10531 NME1-NME2::TNRC6C ENSG00000011052.21::ENSG00000078687.18 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NME1-NME2 ENSG00000011052.21 protein_coding + + chr17:51153590-51171744:+ chr17:51166956:+ chr17:49230951-49249105:+ chr17:49244317:+ TNRC6C ENSG00000078687.18 protein_coding + - chr17:77958703-78108822:+ chr17:78044070:- chr17:75954785-76104903:+ chr17:76040151:- chr17:51168134 chr17:78048591 NA NA chr17:49245495 chr17:76044672 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Nucleoside_diphosphate_kinase(60%)| NDK(71%)| 64 48 113 13781 106 ENST00000393193.6 unknown downstream downstream duplicates(9),low_entropy(1),mismatches(6) TCCCGGGTGTGGTGGTCGCtCCAGCTCTCTGCTCTCCCAGCGCAGCGCCGCCGCCCGGCCCCTCCAGCTTCCCG___GACCATGGCCAACCTGGAGCGCACCTTCATCGCCATCAAGCCGGACGGCGTGCAGCGCGGCCTGGTGGGCGAGATCATCAAGCGCTTCGAGCAGAAGGGATTCCGCCTCGTGGCCATGAAGTTCCTCCGG|GTATATACCCAAAAGAAAGGAGATCAGTATATTGAAGAGAGAGCTTCGATGTTTGCTGCAGCACTACTCACAACAACCAAGATTTGGAAGCAACCTATGTGTCCATAAACAGATGAATAAAGAAAATATGGCAGATATACACAATGGAATACTGTTCAGCCATAAAAAGAATAAGATCCTGTCATTTGCAACAACATGGATGGAACTGGAGGTCACTATGTTAATTAAAATAAGCCAGGCACATGAAGACAAGC srvwwslqlsalpaqrrrpappasRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLR|vytqkkgdqyieerasmfaaalltttkiwkqpmcp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10536 ACACA::NPLOC4 ENSG00000278540.5::ENSG00000182446.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE TRUE 1046 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37330173:- chr17:35441927-35766927:- chr17:35687113:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81572088:- chr17:79523913-79615495:- chr17:79539114:- chr17:37291268,chr17:37291270 chr17:81575336,chr17:81575335 NA NA chr17:35648190,chr17:35648192 chr17:79542362,chr17:79542361 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |NPL4_family(41%) DUF4711(100%)|NPL4(16%),zf-RanBP(100%) 25 15 23 158 443 ENST00000616317.5 ENST00000331134.11 upstream downstream low_entropy(5),mismatches(11) GGAATAATGGATGAACCATCTCCCTTGGCCCAACCTCTGGAGCTGAACCAGCACTCTCGATTCATAATAGGTTCTGTGTCTGAAGATAACTCAGAGGATGAGATCAGCAACCTGGTGAAGTTGGACCTACTGGAGGAGAAGGAGGGCTCCTTGTCACCTGCTTCTGTTGGCTCAGATACACTCTCTGATTTGGGGATCTCTAGCCTACAGGATGGCTTGGCCTTGCACATAAG|GACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCATCATAGAC___ATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGA GIMDEPSPLAQPLELNQHSRFIIGSVSEDNSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISSLQDGLALHIr|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10537 COL14A1::HAS2-AS1 ENSG00000187955.13::ENSG00000248690.8 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA COL14A1 ENSG00000187955.13 protein_coding + + chr8:120059780-120373573:+ chr8:120332735:+ chr8:121072019-121385812:+ chr8:121344974:+ HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121993598:+ chr8:122651533-123006424:+ chr8:123005837:+ chr8:120338014 chr8:121962029 NA NA chr8:121350253 chr8:122974268 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Collagen_triple_helix_repeat_(20_copies)(52%),Fibronectin_type_III_domain(100%),von_Willebrand_factor_type_A_domain(100%)| Collagen(41%),VWA(100%),VWA_2(100%),VWA_3(100%),fn3(100%)| 15 11 23 45 30 ENST00000297848.8 ENST00000664717.1 downstream upstream mismatches(2) GGTGAAATTGGTCTGCCAGGACCTCAGGGTCCACCTGGACCTCAAGGACCAAGTGGTCTGTCCATTCAAGGAATGCCC___GGAATGCCAGGAGA...CAG___GGTATCCCAGGAGGCGTTGGTTCACCAGGACGTGATGGCTCACCAGGCCAGAGG___GGCCTTCCGGGAAAGGATGGATCCTCGGGACCTCCAGGACCACCAGGGCCAATA___GGCATTCCTGGCACCCCTGGAGTCCCAGGGATCACAGGAAGCATGGGACCGCAAGGCGCCCTGGGACCACCT|AAATGCGTAAATGGCGACAGTAGAGCCAGCCTTCATGAATCCAGAAATGTGAGCCACATTTTGAGGATAGCAGAGTCACTGCAGAAGCCTGGATCCTTGCATAACCTTGTCGAGTGGGAAAATCTACCCATACTTGACCAACCACCTAACTGGGGGCTCTACATCTGAGAGAAATGATTTTTTATCTTATTTAAGCCACTGTAGTTAGGAGTCAGTTTATTACAGGACATTGCCT QGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPGPPGPIGIPGTPGVPGITGSMGPQGALGPP|kcvngdsraslhesrnvshilriaeslqkpgslhnlvewenlpildqppnwglyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10539 RPRD1A::MOCOS ENSG00000141425.18::ENSG00000075643.6 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPRD1A ENSG00000141425.18 protein_coding - - chr18:35984387-36067576:- chr18:36067254:- chr18:33564350-33647539:- chr18:33647217:- MOCOS ENSG00000075643.6 protein_coding + - chr18:36187497-36272157:+ chr18:36218187:- chr18:33767460-33852120:+ chr18:33798150:- chr18:36066366,chr18:36066372 chr18:36229577,chr18:36229580 NA NA chr18:33646329,chr18:33646335 chr18:33809540,chr18:33809543 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none CID_domain(36%)| CID(0%)| 12 8 18 338 26 ENST00000399022.9 unknown upstream downstream mismatches(2) GTCTTGGATGAAGCGGCGGCCGTGGTGAGAGCGTGGGGAAGGGTGGGGTGAGGGGGCGAGGCCGCAGCTAGGGCGGCGAAACTCTCCTCCCCTCGGCCCCACCGCGTGGGACGGCGTGAACGTGGTGTCGGAGGGATGTCAGCCTTCTCTGAGGCGGCGCTGGAGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGCAGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGgCCCATCGTCACCGTGTGGGAGCGGGAGCTGCGGAAAG|GGTCTCTGAAGTGCAGTTTCCCAGCCTACAGCTGACCTGTATAAGAGGTGTAGCCGTCCCACCAGCAGCTCCCTCCTGCTGCTCCTTCCACCATATCTCTGGGTTCACCTACCACAGATGCCAAGCCTTGTCGCCCCATCCTGCTTTTGCAAGATGGTGAGATCCTAAACTAATGGAGATGATGTTCTTTGGGTTGACCGTTCTGGTATAGAAGTTCAGCTGTGGAGCAATAGAAGCAGCTTCATGTAATTGTGAGA MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRK|gslkcsfpays* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10540 CPEB1::IGF1R ENSG00000214575.10::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE TRUE 1047 TRUE 1861 TRUE 728 CPEB1 ENSG00000214575.10 protein_coding - - chr15:82543201-82648861:- chr15:82555870:- chr15:83211951-83317612:- chr15:83224620:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cytoplasmic_polyadenylation_element-binding_protein_1_N-terminus(94%)|Furin-like_cysteine_rich_region(75%),Protein_kinase_domain(100%),Receptor_L_domain(49%) CEBP1_N(97%)|C_tripleX(0%),Furin-like(2%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Recep_L_domain(98%) 8 6 13 30 141 ENST00000684509.1 ENST00000650285.1 upstream upstream duplicates(1),mismatches(2) CTTGGGTCTGACTTGGTGGACAAGTTTCCAGCACCCTCAGTTAGAGGATCACGCCTGGACACCCGGCCCATCCTGGACTCTCGATCTAGCAGCCCCTCTGACTCAGACACCAGTGGCTTCAGCTCTGGATCAGATCATCTCTCAGATTTGATT___TCAAGCCTTCGCATTTCTCCACCTCTGCCCTTCCTGTCTCTGTCAGGGGGTGGTCCCAGAGACCCTTTAAAGATGGGGGTAGGGTCTCGGATGGACCAAGAGCAAGCTGCTCTTGCTGCAGTCACTCCCTCCCCAACCAGTGCTTCAAAGAGATGGCCAGGAGCTTCTGTGTGGCCATCCTGGGACCTCCTCGAAGCTCCCAAAGACCCCTTCAGCATAGAGAGAGAGGCCAGGCTGCACCGACAAGCTGCAG|TGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCCTCAGCGCCGAGAGCAGCGACTCCGAG LGSDLVDKFPAPSVRGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAA|vCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10541 CPEB1::IGF1R ENSG00000214575.10::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE TRUE 1048 TRUE 1861 TRUE 728 CPEB1 ENSG00000214575.10 protein_coding - - chr15:82543201-82648861:- chr15:82571344:- chr15:83211951-83317612:- chr15:83240094:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cytoplasmic_polyadenylation_element-binding_protein_1_N-terminus(52%)|Furin-like_cysteine_rich_region(75%),Protein_kinase_domain(100%),Receptor_L_domain(49%) CEBP1_N(81%)|C_tripleX(0%),Furin-like(2%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Recep_L_domain(98%) 3 4 8 86 141 ENST00000568994.1 ENST00000650285.1 upstream upstream mismatches(5) CTGCCTTGCAACCCAGACTTAACGGCACTGCACCGGGACTATTCCAAGTAGCTGTTGTGCTGTCTTTCCCTGGGAG___ACTTCCAGGACTCTGAAGAAACAGTTACAAGCAGGATGCTTTTCCCAACCTCTGCGCAAGAATCTTCCCGTGGCCTCCCAGATGCAAATGACTTGTGCCTTGGCCTGCAGTCCCTCAGTCTGACAGGCTGGGACCGACCCTGGAGCACCCAGGACTCAGATTCCTCAGCCCAGAGCAGCACACACTCGG|TGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCC MLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTHS|vCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10542 ENSG00000260836::IGF1R ENSG00000260836.2::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA TRUE 1862 TRUE 729 ENSG00000260836 ENSG00000260836.2 protein_coding - - chr15:82536788-82573194:- chr15:82555870:- chr15:83205539-83241944:- chr15:83224620:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cytoplasmic_polyadenylation_element-binding_protein_1_N-terminus(91%)|Furin-like_cysteine_rich_region(75%),Protein_kinase_domain(100%),Receptor_L_domain(49%) |C_tripleX(0%),Furin-like(2%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Recep_L_domain(98%) 8 6 12 30 141 ENST00000562833.2 ENST00000650285.1 upstream upstream duplicates(1),mismatches(2) CTTGGGTCTGACTTGGTGGACAAGTTTCCAGCACCCTCAGTTAGAGGATCACGCCTGGACACCCGGCCCATCCTGGACTCTCGATCTAGCAGCCCCTCTGACTCAGACACCAGTGGCTTCAGCTCTGGATCAGATCATCTCTCAGATTTGATT___TCAAGCCTTCGCATTTCTCCACCTCTGCCCTTCCTGTCTCTGTCAGGGGGTGGTCCCAGAGACCCTTTAAAGATGGGGGTAGGGTCTCGGATGGACCAAGAGCAAGCTGCTCTTGCTGCAGTCACTCCCTCCCCAACCAGTGCTTCAAAGAGATGGCCAGGAGCTTCTGTGTGGCCATCCTGGGACCTCCTCGAAGCTCCCAAAGACCCCTTCAGCATAGAGAGAGAGGCCAGGCTGCACCGACAAGCTGCAG|TGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCCTCAGCGCCGAGAGCAGCGACTCCGAG LGSDLVDKFPAPSVRGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAA|vCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10543 ENSG00000260836::IGF1R ENSG00000260836.2::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA TRUE 1862 TRUE 729 ENSG00000260836 ENSG00000260836.2 protein_coding - - chr15:82536788-82573194:- chr15:82571344:- chr15:83205539-83241944:- chr15:83240094:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cytoplasmic_polyadenylation_element-binding_protein_1_N-terminus(22%)|Furin-like_cysteine_rich_region(75%),Protein_kinase_domain(100%),Receptor_L_domain(49%) |C_tripleX(0%),Furin-like(2%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Recep_L_domain(98%) 3 4 7 86 141 ENST00000642270.1 ENST00000650285.1 upstream upstream mismatches(4) CGGCACTGCACCGGGACTATTCCAAGTAGCTGTTGTGCTGTCTTTCCCTGGGAG___ACTTCCAGGACTCTGAAGAAACAGTTACAAGCAGGATGCTTTTCCCAACCTCTGCGCAAGAATCTTCCCGTGGCCTCCCAGATGCAAATGACTTGTGCCTTGGCCTGCAGTCCCTCAGTCTGACAGGCTGGGACCGACCCTGGAGCACCCAGGACTCAGATTCCTCAGCCCAGAGCAGCACACACTCGG|TGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCC alhrdysk*llcclslgDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTHS|vCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10545 STAG1::ARMC8 ENSG00000118007.13::ENSG00000114098.18 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA TRUE 1863 TRUE 730 STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136752195:- chr3:136055078-136471245:- chr3:136471037:- ARMC8 ENSG00000114098.18 protein_coding + + chr3:138187248-138298384:+ chr3:138274449:+ chr3:137906090-138017226:+ chr3:137993291:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 1 0 1 218 110 ENST00000434713.6 ENST00000538260.5 upstream upstream none CCGGACCCAAGTCTGCAGCGGCGCCATTGGCGTGTGGAAAATGCCACCAGATGGCGGGTTAGGATTGCAGCTCCGTTGAAGGCGCGGCCCCCGCTCCCGAACCCCCGGCGACCACCCCGTAACAACCCCCCCACATCGGGAATAACACACCGGAGACTTTTGGGGGGgAACTAGGTCGATGGTCGGCGGCGCCCGGATGGGCAGCTGAG|CATATAGATAAAATAATGAGTACTCATGGAAAGCAAATTATGCAAGCCGTCACTCTTATTCTAGAAGGGGAACATAACATTGAGGTCAAAGAGCAG___ACACTGTGCATCTTAGCCAACATAGCGGATGGGACAACAGCAAAAGATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 10546 STAG1::ARMC8 ENSG00000118007.13::ENSG00000114098.18 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA TRUE 1863 TRUE 730 STAG1 ENSG00000118007.13 protein_coding - - chr3:136336236-136752403:- chr3:136752195:- chr3:136055078-136471245:- chr3:136471037:- ARMC8 ENSG00000114098.18 protein_coding + + chr3:138187248-138298384:+ chr3:138284431:+ chr3:137906090-138017226:+ chr3:138003273:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 1 1 0 218 136 ENST00000383202.7 ENST00000538260.5 upstream upstream none CCCACATCGGGAATAACACACCGGAGACTTTTGGGGGGAAACTAGGTCGATGGTCGGCGGCGCCCGGATGGGCAGCTGAG|ACACTGTGCATCTTAGCCAACATAGCGGATGGGACAACAGCAAAAGATCTTATTATGACCAATGATGATATCCTACAG...TGAAGAGGAAG___GTTCACAAGAACGCCAGGATAAATTACGAGACATGGGCATCGTAGATATTCTACACAAACTGAGTCAGTCACCAGATTCAAACCTTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE stromal antigen 1 2 colorectal cancer, AML epithelial, leukaemia_lymphoma TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 10548 TYW1B::YEATS2 ENSG00000277149.5::ENSG00000163872.16 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE TRUE 1051 FALSE NA FALSE NA TYW1B ENSG00000277149.5 protein_coding - - chr7:72558744-72828200:- chr7:72802400:- chr7:72023729-72298779:- chr7:72267415:- YEATS2 ENSG00000163872.16 protein_coding + + chr3:183697797-183812624:+ chr3:183772305:+ chr3:183415585-183530412:+ chr3:183490093:+ chr7:72789357 chr3:183765476 NA NA chr7:72254374 chr3:183483264 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Flavodoxin(100%)| Flavodoxin_1(100%)| 3 5 5 17 157 ENST00000620995.5 ENST00000305135.10 upstream upstream duplicates(1),inconsistently_clipped(1),mismatches(1) CTCAGAGGAGAGGGAGGAAGGATCTCAAGAGCAGGACGAATTGCATCACAGAGACACCAAG___GAGGAAGAACCCTTCGAGAGCTCCAGTGAAGAAGAGTTTGGTGGTGAGGACCATCAGAGCCTAAATTCCATTGTTGATGTTGAAGATTTGGGCAAAATTATGGATCACGTGAAGAAAGAAAAG|GTTGTCGGGGTACCAGTTGGGTCTGCTTTACCTTCAACAGTGAAGCAGGCTGTGGCGATCAGTGGTGGCCAGATCCTGGTAGCCAAGGCCAGCTCTTCTGTCTCCAAAGCAGTTGGGCCAAAGCAAGTTGTAACCCAAGGAGTTGCCAAAGCAATT SEEREEGSQEQDELHHRDTKEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEK|VVGVPVGSALPSTVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10557 CEP112::FLJ40194 ENSG00000154240.18::ENSG00000177369.11 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP112 ENSG00000154240.18 protein_coding - - chr17:65635537-66192133:- chr17:66005690:- chr17:63631655-64188251:- chr17:64001808:- FLJ40194 ENSG00000177369.11 lncRNA + + chr17:49230853-49318011:+ chr17:49290270:+ chr17:47308215-47395373:+ chr17:47367632:+ chr17:65999217,chr17:65999228 chr17:49285117,chr17:49285106 NA NA chr17:63995335,chr17:63995346 chr17:47362479,chr17:47362468 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Domain_of_unknown_function_(DUF4485)(100%)| DUF4485(100%)| 2 2 3 34 119 ENST00000535342.7 ENST00000656738.1 upstream upstream none AAAGAACTGGAGGCCCGTGTCCAGCAGCTGACTGGAGAAGCAGAGAACAGTAATTTACAGAGGCAGAAATTAATTCAAGAAAAAGaAGAACTTGAAAGATG...AAATAAGTTTCAGATGGAGAAAAGTCATTTAAAACACATCTATGAAgAAAAG___GCTCATGACTTGCAGAGTGAACTTGATAAAGGAAAAGAAGATACTCAAAAGAAAATTCATAAATTTGAGGAAGCTTTGAA|GTTGATTACTGACCTGTTTGTTGTGAAGATGCTGCTGCAATAAGCACAAACAGAACTCATGGCCAGAGAGCTGATGACCACGGATAGGAGCCCTTAGACAAGTAACTGACAGAGAGGGAGCACACACAGTTTCTAACCTGGAGTGCCCGTTGCACTGGTCAGGAGGAAGTGCCTGACCTAG...GACTTGTTCCCTGATGTAACAGATATCTCTTTGGAGCAGAGAAGGTGAGAAGCATTTCCTTACTCATACTCCAGAGTTCCCCCAGTGCTCTTGTTCCTCC NKFQMEKSHLKHIYEeKAHDLQSELDKGKEDTQKKIHKFEEALk|litdlfvvkmllq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10560 NCBP1::TMOD1 ENSG00000136937.13::ENSG00000136842.14 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NCBP1 ENSG00000136937.13 protein_coding + + chr9:97633668-97673748:+ chr9:97633915:+ chr9:100395950-100436030:+ chr9:100396197:+ TMOD1 ENSG00000136842.14 protein_coding + + chr9:97501180-97601743:+ chr9:97524141:+ chr9:100263462-100364025:+ chr9:100286423:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Tropomodulin(100%) |Tropomodulin(100%) 1 6 0 203 20 ENST00000478100.3 ENST00000395211.6 downstream upstream duplicates(1) TGCCGGCCCATCCGCGCGCCTTGCAGCTGTCCTTGCGTCGGCCAGCGGCCAGACAGTTCCTGCAGCGCTTACCGCCTGGCCTCTCGGTTCCGCGGCGCACCGGAGGGCAGCATGTCGCGGCGGCGGCACAGCGACGAGAACGACG|GTATTACTCAGCACAGAAATTCAGGAGACACAGACAAGTTCTTCCACGATGTCGTACAGACGAGAACTAGAGAAATA...GTGACCTGGATGAAtATGAAATCCTTGGAGCCCTAACAGAGGAAGAGCTGAGGACCCTGGAAAATGAGCTGGATGAGCTGGACCCTGAT___AATGCACTGCTGCCTGCAGGCCTGAGGCAGA...___GAAAGGTCTGGGTTCCTAAGCAGAAGCCACTGGATCCTGTGCTGGAAAGTGTGACGCTGGAACCGGAGCTGGAGGAAGC MSRRRHSDEND|gitqhrnsgdtdkffhdvvqtrtre NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10561 NCK1::ZIC4 ENSG00000158092.7::ENSG00000174963.18 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NCK1 ENSG00000158092.7 protein_coding + + chr3:136862208-136951606:+ chr3:136928227:+ chr3:136581050-136670448:+ chr3:136647069:+ ZIC4 ENSG00000174963.18 protein_coding - - chr3:147386046-147406809:- chr3:147402812:- chr3:147103833-147124596:- chr3:147120599:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none SH3_domain(48%)|Zic_proteins_zinc_finger_domain(100%),Zinc_finger__C2H2_type(100%) SH3_1(53%),SH3_10(100%),SH3_2(52%),SH3_9(45%)|zf-C2H2(100%),zf_ZIC(100%) 1 4 1 293 9 ENST00000288986.6 ENST00000491672.5 downstream downstream none GCCGCAGTGGCGTCCTGGAGCCCTCCTCAG___TGCTGAAGCTGCTGAAAGATGGCAGAAGAAGTGGTGGTAGTAGCCAAATTTGATTATGTGGCCCAACAAGAACAAGAGTTGGACATCAAGAAGAATGAGAGATTATGGCTTCTGGATGATTCTAAGTCCTGGTGGCGAGTTCGAAATT...GCCTTCTAACTATGTGGAAAGGAAAAACAGTGCTCGGAAAGCATCTATTGTGAAAAACCTAAAGGATACCTTAG|GCTCAAAGTCAGAAAATGAGATACAAGACATCCTTGGTGATGAGGAAACGATTACGGCTTTACCGAAACACTCTTAAAGAGTCAA___GTAGCAGCTCTGGACACCATGGCCC...___GCGAGAAGCCCTTCAGATGCGAGTTCGAGGGCTGCGAGCGGCGCTTCGCCAACAGCAGCGACCGTAAGAAGCATTCGCACGTGCACACTAGCG PSNYVERKNSARKASIVKNLKDTL|gskseneiqdilgdeetitalpkhs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10562 NR3C2::LINC02994 ENSG00000151623.15::ENSG00000250546.6 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NR3C2 ENSG00000151623.15 protein_coding - - chr4:148078762-148444698:- chr4:148435104:- chr4:148999913-149365850:- chr4:149356256:- LINC02994 ENSG00000250546.6 lncRNA - - chr4:83796436-84299189:- chr4:83796616:- chr4:84717589-85220342:- chr4:84717769:- chr4:148277954 chr4:83846185 NA NA chr4:149199106 chr4:84767338 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 2 2 1 78 4 ENST00000344721.8 ENST00000513489.5 upstream downstream none GTGAATTCAGGTGGACAGTCCTTCCACTACAGGATTGGTGCTCAAGGTACAATATCTTTATCACGATCGGCTAGAGACCAATCTTTCCAACACCTGAGTTCCTTTtCTCCT...CACACGGCGACCTGTCGTCTAGAAGAAGTGATGGGTATCCGGTCTTAGAATACATTCCAGAAAATGTATCAAG|GGAGAAGAAGTTTAACAGAGATGAGGCATCCTGGAATATCCAGGTGGCAACATGGAGTAGAGATGATGACTACTTCTAGGCCATGAAAAACCAGCAGGATCCATGATGGCTGAGAAATGACAATATTGGTG HGDLSSRRSDGYPVLEYIPENVSr|ekkfnrdeaswniqvatwsrdddyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10568 ATAD2B::ENSG00000271955 ENSG00000119778.15::ENSG00000271955.2 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA TRUE 1867 FALSE NA ATAD2B ENSG00000119778.15 protein_coding - - chr2:23748664-23927123:- chr2:23819747:- chr2:23971534-24149993:- chr2:24042617:- ENSG00000271955 ENSG00000271955.2 lncRNA - - chr2:59218680-60100200:- chr2:59858564:- chr2:59445815-60327335:- chr2:60085699:- chr2:23813294 chr2:60091333 NA NA chr2:24036164 chr2:60318468 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)| AAA(100%),AAA_lid_3(100%)| 0 1 0 25 1 ENST00000238789.10 ENST00000650011.1 upstream downstream none CCTACCTTCATTTTACAAT|AACTCATAAGAAGCTGTCAATTAGCAGAACTTCAGGAGAAGACCCTGGGGCCATGTGTCTGAGGGGCAGCCTGCGTGTGTTGGGAGGGCATGTGCTACCCATCGTGTGATGAGA___GAAGTGAAGAAGATTGGAAAAAGTTTCATATTCAAAATAGAACAACATGATGGAGTAGGGAAAAGAG YLHFTi|thkklsisrtsgedpgamclrgslrvlgghvlpiv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10602 SNX11::PRR11 ENSG00000002919.15::ENSG00000068489.13 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SNX11 ENSG00000002919.15 protein_coding + + chr17:48103357-48123601:+ chr17:48107838:+ chr17:46180719-46200963:+ chr17:46185200:+ PRR11 ENSG00000068489.13 protein_coding + - chr17:59155732-59206709:+ chr17:59183333:- chr17:57233093-57284070:+ chr17:57260694:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 0 5 0 145 18 ENST00000393405.6 unknown downstream downstream duplicates(1),mismatches(2) GTCCCAAGTGAGTGGAGGGGGGATCCCGACTCCAGTCCGGGGCCTTGGCCAGCGGAGCCGCGgTATTCGGAAGCGGGAATCCCACTCAGAGCCCGGGCCTG...CCGTGATCTGGCTATATGGTGGGGCGCGGGCGGTGTCGCTGTGGGGAGCTGGTGCTGTTCTCAG|ACTGGACTCTGAAATGGGCATGTACAGAGAAGAGGAGACCCCAAAATGCTTCAGGCTTTGAGTGGAGAAGACACAGCCTCTGCTGGGACAGGGAACAGATGGATGCGGAGACCCTGAAGATGCTTTTGGATGGTGGTCTGAGGTTGGGACAGTGGCAGGAGATACCATTCACCCAGGATCTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10603 RALA::YAE1 ENSG00000006451.8::ENSG00000241127.8 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE TRUE 1060 FALSE NA FALSE NA RALA ENSG00000006451.8 protein_coding + + chr7:39623565-39708120:+ chr7:39623825:+ chr7:39663164-39747719:+ chr7:39663424:+ YAE1 ENSG00000241127.8 protein_coding + + chr7:39566385-39610320:+ chr7:39609617:+ chr7:39605984-39649919:+ chr7:39649216:+ chr7:39627883,chr7:39627882 chr7:39582463,chr7:39582459 NA NA chr7:39667482,chr7:39667481 chr7:39622062,chr7:39622058 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 5 0 5 530 11 ENST00000005257.7 ENST00000432096.2 downstream upstream mismatches(1) TGGATCTCCCCAGAGCAAAGCGTCGGAGTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCAGCCGCCCAGGCTCCCCCGCCACCCGTCAGACTCCTCCTTCGACCGCTCCCGGCGCGGGGCCTTCCAGGCGACAAGGACCGAGTACCCTCCGGCCGGAGCCACGCAGCCGCGGCTTCCGGAGCCCTCGGGGCGGCGGACTGGCTCGCGGTGCAG|GAACTCAACGGATTGGAGCCTACTGGGCTTGAGAGCCCCGCTGAGGAGTCCGGAGGTTGaGACGCAACTACTGCCGCGTCCCCTCCCGGTCCCCGGCCACATGGCGAGCGGGGCGACACCGAAGCAGCCCACGGAGCTCGAGGCGACGCTGCTGAGCCTGGTTCCCCAAAGCGGCCGCGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10605 KLHL29::ARHGAP35 ENSG00000119771.15::ENSG00000160007.20 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLHL29 ENSG00000119771.15 protein_coding + + chr2:23385179-23708611:+ chr2:23385626:+ chr2:23608050-23931481:+ chr2:23608497:+ ARHGAP35 ENSG00000160007.20 protein_coding + + chr19:46860997-47005077:+ chr19:46987989:+ chr19:47364254-47508334:+ chr19:47491246:+ chr2:23449669 chr19:46951868 NA NA chr2:23672540 chr19:47455125 NA NA sense sense unknown 5'UTR CDS translocation low none |RhoGAP_domain(90%) |RhoGAP(19%) 0 0 6 49 390 ENST00000486442.6 ENST00000672722.1 downstream upstream duplicates(1),mismatches(1) CGACTTCCCTCTCCCGGGCATCCTCCCTGGGCTGCCGGGAGGCGGCGGCGGCGGAGGAGGAGGAGGAACGAGGGGAGAAGGCGGAGAGCAGGgAgGCGAGG...|...GACTGAGCACGGAAGGCATCTACCGGGTCAGCGGGAACAAGTCTGAGATGGAGAGTCTGCAGAGACAGTTTGATCAAG___ACCACAACCTGGACCTGGCAGAGAAAGACTTTACGGTGAATACCGTGGCTGGTGCCATGAAGAGCTTTTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 35 1 Yes endometrial carcinoma epithelial TSG nonsense, missense, frameshift, other 10611 VPS13D::TNFRSF1B ENSG00000048707.15::ENSG00000028137.19 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12244617:+ chr1:12290087-12572099:+ chr1:12304674:+ TNFRSF1B ENSG00000028137.19 protein_coding + + chr1:12166991-12209228:+ chr1:12201967:+ chr1:12227048-12269285:+ chr1:12262024:+ chr1:12248259 chr1:12200488 NA NA chr1:12308316 chr1:12260545 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none N-terminal_region_of_Chorein_or_VPS13(100%),Vacuolar_sorting-associated_protein_13__N-terminal(5%)| Chorein_N(100%),VPS13(0%)| 1 2 0 86 12 ENST00000620676.6 ENST00000376259.7 downstream upstream mismatches(1) GGATATAGTCATGTTGGAAGGCCTTGTAGCCTGGGTTCTCAATACCTATTTGGGAAAATATGTCAATAACCTGAACACTGACCAGCTCTCAGTTGCACTTC...GCCAGCAGAAAGGGGAGTCCTATTGGTATTCAGTTACCGCCTCCGTAGTTACAAGGATTGTGGAGAATATTGAA|CCTCACTTGCCTGCCGATAAGGCCCGGGGTACACAGGGCCCCGAGCAGCAGCACCTGCTGATCACAGCGCCGAGCTCCAGCAGCAGCTCCCTG...CTGTAGCAGCTCTGACCACAGCTCACAGTGCTCCTCCCAAGCCAGCTCCACAATGGGAGACACAGATTCCAGCCCCTCGGAGTCCCCGAAGGACGAGCAGG QQKGESYWYSVTASVVTRIVENIE|PHLPADKARGTQGPEQQHLLITAPSSSSSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma SKIN no_match 12476880 FALSE 12252488 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10612 ZMPSTE24::RLF ENSG00000084073.10::ENSG00000117000.9 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281527:+ chr1:40723713-40759852:+ chr1:40747199:+ RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40235792:+ chr1:40627059-40706593:+ chr1:40701464:+ chr1:40282679 chr1:40233064 NA NA chr1:40748351 chr1:40698736 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none CAAX_prenyl_protease_N-terminal__five_membrane_helices(100%),Peptidase_family_M48(36%)|Zinc_finger__C2H2_type(100%) Peptidase_M48(46%),Peptidase_M48_N(100%)|zf-C2H2(100%) 0 1 2 440 72 ENST00000372759.4 ENST00000372771.5 downstream upstream none ACAGTGAAGAAATAAAAGCTAAAGTTAAA|GCACAAGATGCTGGTCTTGGGGTGTCAATTTTACTGTGTGTCAGAGCTCTTCAACTCAGATCAAGTGAAGATGAGGAAATGAAGGCATCAGTTTGTAAAACAATTGCCTGTCTTTTACCAGAAGATTTAGAAGTTAGACGAGCCTGTCAGCTTACAGAATTCTTAATTGAACCCAGTTTGGATGGATTTAATATGTTAGAAGAACTATATTTGCAACCAGATCAAAAATTTGATGAAGAAAATGCACCGG SEEIKAKVK|AQDAGLGVSILLCVRALQLRSSEDEEMKASVCKTIACLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYLQPDQKFDEENAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10625 SNHG16::PITPNC1 ENSG00000163597.17::ENSG00000154217.16 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA TRUE 1878 TRUE 731 SNHG16 ENSG00000163597.17 lncRNA + + chr17:76557727-76670985:+ chr17:76557857:+ chr17:74553809-74667067:+ chr17:74553939:+ PITPNC1 ENSG00000154217.16 protein_coding + + chr17:67377281-67697256:+ chr17:67632143:+ chr17:65373397-65693372:+ chr17:65628259:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Phosphatidylinositol_transfer_protein(52%) |IP_trans(19%) 0 1 0 2157 762 ENST00000701062.1 ENST00000580974.6 downstream upstream none CCGCGTGGCTGGAAGACATGGCCACTCCAGTCGGTGTTGAGCACGGCGAGCAGTCTCAGGCCTTTAGTGATGATG|ATTTTCGACAATGAAGCCAAAGACGTGGAGAGAGAAGTTTGCTTTATTGATATTGCCTGCGATGAAATTCCAGAGCGCTACTACAAAGAATCTGAG___GAcCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10626 SNHG16::PITPNC1 ENSG00000163597.17::ENSG00000154217.16 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary arriba TRUE FALSE FALSE NA TRUE 1878 TRUE 731 SNHG16 ENSG00000163597.17 lncRNA + + chr17:76557727-76670985:+ chr17:76561398:+ chr17:74553809-74667067:+ chr17:74557480:+ PITPNC1 ENSG00000154217.16 protein_coding + + chr17:67377281-67697256:+ chr17:67632143:+ chr17:65373397-65693372:+ chr17:65628259:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Phosphatidylinositol_transfer_protein(52%) |IP_trans(19%) 1 0 0 1572 762 ENST00000701062.1 ENST00000580974.6 downstream upstream none CGCGTGGCTGGAAGACATGGCCACTCCAGTCGGTGTTGAGCACGGCGAGCAGTCTCAGGCCTTTAGTGATGATG___GTGCAGTCAGCCTCAGTTTCCAAAGCC...CTAGTAGCCACGGTGTGGCAGCTGCTCTGAACCAGGACCTGGACCCGGACCCAAAGTGCCATGTCTTTAAT|ATTTTCGACAATGAAGCCAAAGACGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10631 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1061 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186451:+ chr16:57220049-57274381:+ chr16:57220363:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 7 14 15 270 433 ENST00000394420.9 ENST00000646303.1 downstream upstream duplicates(1),mismatches(3) CGTAATGGCAGCGCCGTGGCCTCGCGTCCATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTCGCGCCGCCGCCGCCGCCCCCTCCCTCCGGTGGGCCCGGGAGGTAGAGAAA|AGGAGAGGAGACGCCGTGAGCGGGACGACCAGATGTACCGAGAGCGGCTGCGCACCTTGCTGGTCATCGCGGTTGTCATGAGCCTCCTGAATGCTCTCAGCACCAGCGGAGGCAGCATTTCCTGGAACGACTTTGTCCACGAGATGCTGGCCAAGGGCGAGGTGCAGCGCGTCCAGGTGGTGCCTGAGAGCGACGTGGTGGAAGTCTACCTGCACCCTGGAGCCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10632 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1062 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186785:+ chr16:57220049-57274381:+ chr16:57220697:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 13 0 22 157 433 ENST00000566352.1 ENST00000646303.1 downstream upstream duplicates(2),inconsistently_clipped(1),mismatches(1) CTCTGGAAAGGGCCCGGGAGAGAGGTGGCGTTGGTCAGAACCTGAGAAACAGCCGAGAGGTTTTCCACCGAGGCCCGCGCTTGAGGGATCTGAAGAGGTTCCTAGAAGAGGGTGTTCCCTCTTTCGGGGGTCCTCACCAGAAGAGGTTCTTGGGGGTCGCCCTTCTGAGGAGGCTGCGGCTAACAGGGCCCAG|AGGAGAGGAGACGCCGTGAGCGGGACGACCAGATGTACCGAGAGCGGCTGCGCACCTTGCTGGTCATCGCGGTTGTCATGAGCCTCCTGAATGCTCTCAGCACCAGCGGAGGCAGCATTTCCTGGAACGACTTTGTCCACGAGATGCTGGCCAAGGGCGAGGTGCAGCGCGTCCAGGTGGTGCCTGAGAGCGACGTGGTGGAAGTCTACCTGCACCCTGGAGCCGTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10633 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1063 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57187050:+ chr16:57220049-57274381:+ chr16:57220962:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 0 3 22 36 433 ENST00000537866.5 ENST00000646303.1 downstream upstream duplicates(2),mismatches(1) CGGAAGCCGGAGCTGAAAATTGG|AGGAGAGGAGACGCCGTGAGCGGGACGACCAGATGTACCGAGAGCGGCTGCGCACCTTGCTGGTCATCGCGGTTGTCATGAGCCTCCTGAATGCTCTCAGCACCAGCGGAGGCAGCATTTCCTGGAACGACTTTGTCCACGAGATGCTGGCCAAGGGCGAGGTGCAGCGCGTCCAGGTGGTGCCTGAGAGCGACGTGGTGGAAGTCTACCTGCACCCTGGAGCCGTGGTGTTTGGGCGGCCT___CGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10634 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186451:+ chr16:57220049-57274381:+ chr16:57220363:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89523483:+ chr16:89557127-89624174:+ chr16:89589891:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 0 2 19 270 43 ENST00000394420.9 ENST00000643668.1 downstream upstream mismatches(1) CAGCGCCGTGGCCTCGCGTCCATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTCGCGCCGCCGCCGCCGCCCCCTCCCTCCGGTGGGCCCGGGAGGTAGAGAAA|TATTTGATCAAACTCCAAGCAACTGGATTCATGGCCATTGTGAGCTTGCACTTTGCAGCAGGAGAGCTGACTGCATCTGTGACGGCTCGGACGGCCTGGGACGGTCGTTTCTTTTCTGAGACgGGGTCGTTCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10635 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186785:+ chr16:57220049-57274381:+ chr16:57220697:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89523483:+ chr16:89557127-89624174:+ chr16:89589891:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 1 0 27 157 43 ENST00000566352.1 ENST00000643668.1 downstream upstream duplicates(2),mismatches(1) AAAGGGCCCGGGAGAGAGGTGGCGTTGGTCAGAACCTGAGAAACAGCCGAGAGGTTTTCCACCGAGGCCCGCGCTTGAGGGATCTGAAGAGGTTCCTAGAAGAGGGTGTTCCCTCTTTCGGGGGTCCTCACCAGAAGAGGTTCTTGGGGGTCGCCCTTCTGAGGAGGCTGCGGCTAACAGGGCCCAG|TATTTGATCAAACTCCAAGCAACTGGATTCATGGCCATTGTGAGCTTGCACTTTGCAGCAGGAGAGCTGACTGCATCTGTGACGGCTCGGACGGCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10636 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186429:+ chr16:57220049-57274381:+ chr16:57220341:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),FtsH_Extracellular(100%),Peptidase_family_M41(100%) |AAA(100%),AAA_5(100%),AAA_lid_3(100%),FtsH_ext(100%),Peptidase_M41(100%),RuvB_N(100%) 2 0 1 258 433 ENST00000564435.5 ENST00000646303.1 downstream upstream none GAAGCGGGGGTGGGCTCTGCGCGTAATGGCAGCGCCGTGGCCTCGCGTCCATCTTTGCCGTTCTCTCGGACCTGTCACAAAGGAGTCGCGCCGCCGCCGCCGCCCCCTCCCTCCG|AGGAGAGGAGACGCCGTGAGCGGGACGACCAGATGTACCGAGAGCGGCTGCGCACCTTGCTGGTCATCGCGGTTGTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10637 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186451:+ chr16:57220049-57274381:+ chr16:57220363:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89544648:+ chr16:89557127-89624174:+ chr16:89611056:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(26%),Peptidase_family_M41(100%) |AAA(1%),AAA_5(0%),AAA_lid_3(100%),Peptidase_M41(100%) 0 1 0 270 542 ENST00000394420.9 ENST00000647079.1 downstream upstream none AAGGAGTCGCGCCGCCGCCGCCGCCCCCTCCCTCCGGTGGGCCCGGGgGGgAGAGAAA|GAATGGGTACCACAGACCATGTCATCGTCCTtGCGgCCACG...AGCCTGAAGCTGACCCAGTCCAGCACCTTTTACTCCCAGCGTCTGGCAGAGCTGACACCAGGATTCAGTG___GGGCTGACATCGCCAACATCTGCAATGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10638 ARID4A::PSMA3 ENSG00000032219.19::ENSG00000100567.13 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1064 TRUE 1881 TRUE 733 ARID4A ENSG00000032219.19 protein_coding + + chr14:58298504-58373887:+ chr14:58306112:+ chr14:58765222-58840605:+ chr14:58772830:+ PSMA3 ENSG00000100567.13 protein_coding + + chr14:58244843-58272012:+ chr14:58263705:+ chr14:58711561-58738730:+ chr14:58730423:+ chr14:58312859,chr14:58312859 chr14:58261935,chr14:58261932 NA NA chr14:58779577,chr14:58779577 chr14:58728653,chr14:58728650 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Proteasome_subunit(31%) |Proteasome(29%) 7 5 16 64 1477 ENST00000355431.8 ENST00000216455.9 downstream upstream mismatches(1) GGTGAAAGTTAAG___GTACTCCTGAAACAGGATAATACCACACAATTGGTACAAGATGACCAAGTAAAGGGTCCTTTAAGA___GTTGGAGCTATTGTTGAAACAAGGACATCTGATGGATCTTTTCAGGAAGCTATTATCAGCAAGTTGACAGATGCTAGTTGGTATACCGTGG|GGTTATTGGGGCTGTGCCATCGGCAAAGCCAGGCAAGCTGCAAAGACGGAAATAGAGAAGCTTCAG___ATGAAAGAAATGACCTGCCGTGATATCGTTAAAGAAGTTGCAAAAAT___AATTTACATAGTACATGACGAAGTTAAGGATAAAGCTTTTGAACTAGAACTCAGCTGGGTTGGTGAAT___TAACTAATGGAAGACATGAAATTGTTCCAAAAGATATAAGAGAAGAAGCAGAG VKVKVLLKQDNTTQLVQDDQVKGPLRVGAIVETRTSDGSFQEAIISKLTDASWYTV|gllglchrqsqasckdgnreasderndlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10639 ARID4A::PSMA3 ENSG00000032219.19::ENSG00000100567.13 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1065 TRUE 1881 TRUE 733 ARID4A ENSG00000032219.19 protein_coding + + chr14:58298504-58373887:+ chr14:58301690:+ chr14:58765222-58840605:+ chr14:58768408:+ PSMA3 ENSG00000100567.13 protein_coding + + chr14:58244843-58272012:+ chr14:58263705:+ chr14:58711561-58738730:+ chr14:58730423:+ chr14:58312859,chr14:58312859 chr14:58261935,chr14:58261932 NA NA chr14:58779577,chr14:58779577 chr14:58728653,chr14:58728650 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Proteasome_subunit(31%) |Proteasome(29%) 4 4 6 73 1477 ENST00000355431.8 ENST00000216455.9 downstream upstream mismatches(1) CTTCACCCGCAGTTG___TTCTAGCGACTGCGAAGATAGCTCGCTGAGCTGGAACCCCACAGATCACCAACAAAAATGAAG___GCGGCAGATGAGCCTGCCTACCTGACAGTGGGAACCGATGTCAGTGCCAAGTACCGAGGTGCCTTCTGTGAGGCAAAGATTAAGACTGTGAAAAGGCTGGTGAAAGTTAAG|GGTTATTGGGGCTGTGCCATCGGCAAAGCCAGGCAAGCTGCAAAGACGGAAATAGAGAAGCTTCAG___ATGAAAGAAATGACCTGCCGTGATATCGTTAAAGAAGTTGCAAAAAT___AATTTACATAGTACATGACGAAGTTAAGGATAAAGCTTTTGAACTAGAA MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVK|GYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10640 SLC25A44::ENSG00000285677 ENSG00000160785.14::ENSG00000285677.2 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1882 TRUE 734 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156200472:+ chr1:156163723-156182587:+ chr1:156170263:+ ENSG00000285677 ENSG00000285677.2 lncRNA + + chr1:156001953-156033342:+ chr1:156032827:+ chr1:155971744-156003133:+ chr1:156002618:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Mitochondrial_carrier_protein(70%)| Mito_carr(5%)| 6 5 7 206 21 ENST00000423538.6 ENST00000671325.1 downstream upstream none TGCGGGGGAACCCAGAGGGACAAGGGGTAGTTGCCTTTGGCCAAACCAAGGACATCATCAGGCAGATCCTGCAGGCTGATGGACTTCGCGGCTTCTATCGAGGCTATGTGGCTTCACTGCTTACCTATATCCCAAACAGTGCTGTCTGGTGGCCCTTCTATCACTTCTATGCAG|GAAGAAGATCCCAGCCTTGTTCAGACGAAGAGGCGGAAGCAGAACAAGGTTTGCATTCTCCAGATGAGGAAAAATGAGGTGAAAGAGGAAGACAAGGAGGACAAGGAGGATGAGGAAGAGGAGGAGGACCAGAGAGAGGGGCCCCCTACCTCTTTGCAATCACCTAGGACAGGACAGAGGCAATGCCCGTACTCAAGAATCCGCCAAGTGAGGCACAAGGAGCACCTGAGCATCTTGGAAAGTGGCTTGAGCTTATCCACCAATGAAACCAAGTTGTCTGTCCATGTTTTTGCCAATACTTATGTAG RGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYA|grrsqpcsdeeaeaeqglhspdeek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10641 SLC25A44::ENSG00000285677 ENSG00000160785.14::ENSG00000285677.2 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1882 TRUE 734 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156200472:+ chr1:156163723-156182587:+ chr1:156170263:+ ENSG00000285677 ENSG00000285677.2 lncRNA + + chr1:156001953-156033342:+ chr1:156025433:+ chr1:155971744-156003133:+ chr1:155995224:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Mitochondrial_carrier_protein(70%)| Mito_carr(5%)| 1 0 8 206 0 ENST00000423538.6 ENST00000650235.1 downstream upstream none CTTTCAGGTGCGGGGGAACCCAGAGGGACAAGGGGTAGTTGCCTTTGGCCAAACCAAGGACATCATCAGGCAGATCCTGCAGGCTGATGGACTTCGCGGCTTCTATCGAGGCTATGTGGCTTCACTGCTTACCTATATCCCAAACAGTGCTGTCTGGTGGCCCTTCTATCACTTCTATGCAG|ATATCATACTCTGAAGATGGAATGGCGACGTCAGTGAGGAGGCCAGAAACAGGGGTCTCC FQVRGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYA|diil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10642 SLC25A44::ENSG00000285677 ENSG00000160785.14::ENSG00000285677.2 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1882 TRUE 734 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156200472:+ chr1:156163723-156182587:+ chr1:156170263:+ ENSG00000285677 ENSG00000285677.2 lncRNA + + chr1:156001953-156033342:+ chr1:156030733:+ chr1:155971744-156003133:+ chr1:156000524:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Mitochondrial_carrier_protein(70%)| Mito_carr(5%)| 1 0 8 206 0 ENST00000423538.6 ENST00000664369.1 downstream upstream none GCGGGGGAACCCAGAGGGACAAGGGGTAGTTGCCTTTGGCCAAACCAAGGACATCATCAGGCAGATCCTGCAGGCTGATGGACTTCGCGGCTTCTATCGAGGCTATGTGGCTTCACTGCTTACCTATATCCCAAACAGTGCTGTCTGGTGGCCCTTCTATCACTTCTATGCAG|GAGATCAAAGAAGCTTGGGGGGCTTCAGGGGAAGAAAATCCCTCCTTTAACAAATTTG RGNPEGQGVVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYA|gdqrslggfrgrksll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10643 SLC25A44::ENSG00000285677 ENSG00000160785.14::ENSG00000285677.2 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 1882 TRUE 734 SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ ENSG00000285677 ENSG00000285677.2 lncRNA + + chr1:156001953-156033342:+ chr1:156032827:+ chr1:155971744-156003133:+ chr1:156002618:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 2 2 332 21 ENST00000684582.1 ENST00000671325.1 downstream upstream none GGAAGATGCGACCGGCAGACGGCATTCGCTGGGAACGACGGATAGACTGGGGGCTGCGGCCTAGAGGTCCGGGCTTGGAGTTCGCCTCAGACGCGGTGGAGCCGCCGGAGTCTGAGAAG|GAAGAAGATCCCAGCCTTGTTCAGACGAAGAGGCGGAAGCAGAACAAGGTTTGCATTCTCCAGATGAGGAAAAATGAGGTGAAAGAGGAAGACAAGGAGGACAAGGAGGATGAGGAAGAGGAGGAGGACCAGAGAGAGGGGCCCCCTACCTCTTTGCAATCACCTAGGACAGGACAGAGGCAATGCCCGTACTCAAGAATCCGCCAAGTGAG MRPADGIRWERRIDWGLRPRGPGLEFASDAVEPPESEK|eedpslvqtkrrkqnkvcilqmrknevkeedkedkedeeeeedqregpptslqsprtgqrqcpysrirqv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10644 SSR2::SLC25A44 ENSG00000163479.14::ENSG00000160785.14 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SSR2 ENSG00000163479.14 protein_coding - - chr1:156009048-156020951:- chr1:156018132:- chr1:155978839-155990742:- chr1:155987923:- SLC25A44 ENSG00000160785.14 protein_coding + - chr1:156193932-156212796:+ chr1:156199889:- chr1:156163723-156182587:+ chr1:156169680:- NA NA NA NA NA NA NA NA sense antisense unknown 3'UTR/splice-site CDS duplication/5'-5' high none Translocon-associated_protein_beta_(TRAPB)(45%)| TRAP_beta(19%)| 3 5 5 80 251 ENST00000480176.5 unknown upstream downstream none CTCAAG___TGCTGCATTAGACGTGGAACTATCTGATGATTCCTTCCCTCCAGAAGACTTTGGCATTGTGTCTGGAATGCTCAATGTCAAATGGGACCGGATTGCCCCGTATCCTCTTGGCACTTGGTGATGAAGGGTCGGGGGGCAGGGAGAGCCTTGCCTGCAAAGCAGCAGGGGTACTTCAAATAGGCTGGATATGTGTGGCTGTCCTCCTGTCATCTCTCTGGATAAGATGGAGCAAGAGAG|GTGTTCCCACTCGATGATCTGGATGTTGCGTTTGTCCTCCATGGTGCCTGAAGACCTGGGATTTGAGCAGcATGGAGGGATGTGAAGAAGGAGGGTGGAGCTTTGTGCTTTCCCCTTCTGGCTGGGCTCTGAAGGCCCATTCTCAGCCCTCATCTCCTGGACACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10646 PSME3IP1::ADGRG5 ENSG00000172775.18::ENSG00000159618.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1067 TRUE 1883 FALSE NA PSME3IP1 ENSG00000172775.18 protein_coding - - chr16:57152466-57186116:- chr16:57164001:- chr16:57186378-57220028:- chr16:57197913:- ADGRG5 ENSG00000159618.16 protein_coding + + chr16:57542643-57591681:+ chr16:57563091:+ chr16:57576555-57625593:+ chr16:57597003:+ chr16:57160596,chr16:57160598 chr16:57562681,chr16:57562679 NA NA chr16:57194508,chr16:57194510 chr16:57596593,chr16:57596591 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none FAM192A/Fyv6__N-terminal_domain(100%)|7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(100%) FAM192A_Fyv6_N(100%)|7tm_2(100%),GPS(100%) 2 2 4 622 22 ENST00000309137.13 ENST00000349457.8 upstream upstream duplicates(1),mismatches(3) GGAATACAGA___AATAACCTCAAGAAGGTTGGAATTTCTCAAGAGAACAAGAAGGAAGTGGAAAAGAAACTGACTGTGAAGCCTATAGAAACCAAGAACAAGTTCTCCCAGGCGAAGCTGTTGGCAGGAGCTGTGAAGCATAAGAG___CTCAGAGAGTGGCAACAGTGTGAAAAGACTGAAACCGGACCCTGAGCCAGATGACAAGAATCAAG|TCAACTCCACCAGCTGGAGCAGATGCTACTGAACACCAGCTTCCCAGGCTACAACCTGACCTTGCAGACACCCACCATCCAGTCTCTGGCCTTCAAGCTGAGCTGTGACTTCTCTGGCCTCTCGCTGACCAGTGCCACTCTGAAGCGGGTGCCCCAG___GCAGGAGGTCAGCATGCCCGGGGTCAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCGCCCCAGGGAGCTGCGGCTCATCTGTATCTACTTCTCCAACACCCACTTTTTCAAG___GATGAAAACAACTCATCTCTGCTGAATAACTACGTCCT EYRNNLKKVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDKNQ|vnstswsrcy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10663 PSME3IP1::KIFC3 ENSG00000172775.18::ENSG00000140859.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSME3IP1 ENSG00000172775.18 protein_coding - - chr16:57152466-57186116:- chr16:57164001:- chr16:57186378-57220028:- chr16:57197913:- KIFC3 ENSG00000140859.16 protein_coding - - chr16:57758217-57863053:- chr16:57857708:- chr16:57792129-57896957:- chr16:57891612:- chr16:57162404 chr16:57858305 NA NA chr16:57196316 chr16:57892209 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none FAM192A/Fyv6__N-terminal_domain(100%)|Kinesin_motor_domain(100%) FAM192A_Fyv6_N(100%)|Kinesin(100%),Microtub_bd(100%) 0 2 1 622 7 ENST00000309137.13 unknown upstream downstream none AGCTCAGAGAGTGGCAACAGTGTGAAAAGACTGAAACCGGACCCTGAGCCAGATGACAAGAATCAAG|GGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTAACACAGGAACAGAAAACCAAACACTGAACATACTCACTCATAAGTGGGAGTTGAACAATGAGAACACATAGAC SSESGNSVKRLKPDPEPDDKNQ|gtwmkletiilskltqeqktkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6772 chr16:57772289-57772352:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10678 BCR::ABL1 ENSG00000186716.21::ENSG00000097007.20 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary arriba TRUE TRUE TRUE 1069 FALSE NA FALSE NA BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23290413:+ chr22:23521891-23660224:+ chr22:23632600:+ ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130854064:+ chr9:133588430-133763062:+ chr9:133729451:+ chr22:23292167,chr22:23292168 chr9:130811620,chr9:130811618 NA NA chr22:23634354,chr22:23634355 chr9:133687007,chr9:133687005 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman Bcr-Abl_oncoprotein_oligomerisation_domain(100%),C2_domain(16%),PH_domain(100%),RhoGEF_domain(100%)|F-actin_binding(100%),Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%) Bcr-Abl_Oligo(100%),C2(0%),PH_19(100%),RhoGEF(100%)|F_actin_bind(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(100%),SH3_1(100%),SH3_2(100%) 49 67 78 258 212 ENST00000305877.13 ENST00000372348.9 downstream upstream duplicates(24),inconsistently_clipped(1),mismatches(6) GAAGCTTCTCCCTGACATCCGTGGAGCTGCAGATGCTGACCAACTCGTGTGTGAAACTCCAGACTGTCCACAGCATTCCGCTGACCATCAATAAGGAAG___ATGATGAGTCTCCGGGGCTCTATGGGTTTCTGAATGTCATCGTCCACTCAGCCACTGGATTTAAGCAGAGTTCAA|AAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAG___GTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGG SFSLTSVELQMLTNSCVKLQTVHSIPLTINKEDDESPGLYGFLNVIVHSATGFKQSS|kALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Breakpoint cluster region protein Atypical BCR P11274 TRUE TRUE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 23524426,23632600,23632600,23524426 FALSE,TRUE,TRUE,FALSE 133729451,133729451,133729451,133729451 TRUE,TRUE,TRUE,TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense 10679 ABL1::BCR ENSG00000097007.20::ENSG00000186716.21 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary arriba TRUE TRUE TRUE 1070 TRUE 1892 TRUE 735 ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130714455:+ chr9:133588430-133763062:+ chr9:133589842:+ BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23292541:+ chr22:23521891-23660224:+ chr22:23634728:+ chr9:130811616,chr9:130811617 chr22:23292164,chr22:23292162 NA NA chr9:133687003,chr9:133687004 chr22:23634351,chr22:23634349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |C2_domain(83%),RhoGAP_domain(100%) |C2(88%),RhoGAP(100%) 13 27 32 51 148 ENST00000372348.9 ENST00000305877.13 downstream upstream duplicates(7),low_entropy(2),mismappers(1),mismatches(4) GTATATGCCATTTCCCTCTACGCTCGCTGACCGTTCTGGAAGATCTTGAACCCTCTTCTGGAAAGGGGTACCTATTATTACTTTATGGGGCAGCAGCCTGGAAAAGTACTTGGGGACCAAAGAAGGCCAAGCTTGCCTGCCCTGCATTTTATCAAAGGAGCAGGGAAGAAGGAATCATCGAGGCATGGGGGTCCACACTGCAATGTTTTTGTGGAACATG|ATCTGTACTGCACCCTGGAGGTGGATTCCTTTGGGTATTTTGTGAATAAAGCAAAGACGCGCGTCTACAGGGACACAGCTGAGCCAAACTGGAACGAG___GAATTTGAGATAGAGCTGGAGGGCTCCCAGACCCTGAGGATACTGTGCTATGAAAAGTGTTACAACAAGACGAAGATCCCCAAGGAGGACGGCGAGAGCACGGACAGACTCATGGGGAAGGGCCAGGTCCAG___CTGGACCCGCAGGCCCTGCAGGACAGAGACTG MGQQPGKVLGDQRRPSLPALHFIKGAGKKESSRHGGPHCNVFVEH|dLYCTLEVDSFGYFVNKAKTRVYRDTAEPNWNEEFEIELEGSQTLRILCYEKCYNKTKIPKEDGESTDRLMGKGQVQLDPQALQDRD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE TRUE Breakpoint cluster region protein Atypical BCR P11274 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 133589842,133589842,133589842|133589842 TRUE,TRUE,TRUE|TRUE 23595986,23634728,23634728|23651611 FALSE,TRUE,TRUE|FALSE PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation 10680 ABL1::BCR ENSG00000097007.20::ENSG00000186716.21 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary arriba TRUE TRUE FALSE NA TRUE 1892 TRUE 735 ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130714455:+ chr9:133588430-133763062:+ chr9:133589842:+ BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23295024:+ chr22:23521891-23660224:+ chr22:23637211:+ chr9:130811616,chr9:130811617 chr22:23292164,chr22:23292162 NA NA chr9:133687003,chr9:133687004 chr22:23634351,chr22:23634349 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |C2_domain(49%),RhoGAP_domain(100%) |C2(75%),RhoGAP(100%) 0 3 10 51 191 ENST00000372348.9 ENST00000305877.13 downstream upstream duplicates(2),mismappers(1) TTCAATTGCTGACTTGTGGAGATGCAGCGAATGTGAAATCCCACGTATATGCCATTTCCCTCTACGCTCGCTGACCGTTCTGGAAGATCTTGAACCCTCTTCTGGAAAGGGGTACCTATTATTACTTTATGGGGCAGCAGCCTGGAAAAGTACTTGGGGACCAAAGAAGGCCAAGCTTGCCTGCCCTGCATTTTATCAAAGGAGCAGGGAAGAAGGAATCATCGAGGCATGGGGGTCCACACTGCAATGTTTTTGTGGAACATG|GAATTTGAGATAGAGCTGGAGGGCTCCCAGACCCTGAGGATACTGTGCTATGAAAAGTGTTACAACAAGACGAAGATCCCCAAGGAGGACGGCGAGAGCACGGACAGACTCATGGGGAAGGGCCAGGTCCAG___CTGGACCCGCAGGCCCTGCAGGACAGAGACTGGCAGCGCACCGTCATCGCCATGAATGGG___ATCGAAGTAAAGCTCTCGGTCAAGTTCAACAGCAGGGAGTTCAGC MGQQPGKVLGDQRRPSLPALHFIKGAGKKESSRHGGPHCNVFVEH|gi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE FALSE Breakpoint cluster region protein Atypical BCR P11274 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 133589842,133589842,133589842|133589842 TRUE,TRUE,TRUE|TRUE 23595986,23634728,23634728|23651611 FALSE,FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation 10681 ABL1::BCR ENSG00000097007.20::ENSG00000186716.21 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary arriba TRUE TRUE FALSE NA TRUE 1892 TRUE 735 ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130714455:+ chr9:133588430-133763062:+ chr9:133589842:+ BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23309424:+ chr22:23521891-23660224:+ chr22:23651611:+ chr9:130811616,chr9:130811617 chr22:23292164,chr22:23292162 NA NA chr9:133687003,chr9:133687004 chr22:23634351,chr22:23634349 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |C2_domain(3%),RhoGAP_domain(100%) |C2(0%),RhoGAP(100%) 1 0 6 51 205 ENST00000372348.9 ENST00000305877.13 downstream upstream none TTCAATTGCTGACTTGTGGAGATGCAGCGAATGTGAAATCCCACGTATATGCCATTTCCCTCTACGCTCGCTGACCGTTCTGGAAGATCTTGAACaCTCTT...GCAGCCTGGAAAAGTACTTGGGGACCAAAGAAGGCCAAGCTTGCCTGCCCTGCATTTTATCAAAGGAGCAGGGAAGAAGGAATCATCGAGGCATGGGGGTCCACACTGCAATGTTTTTGTGGAACATG|CTGGACCCGCAGGCCCTGCAGGACAGAGACTGGCAGCGCACCGTCATCGCCATGAATGGG___ATCGAAGTAAAGCTCTCGGTCAAGTTCAACAGCAGGGAGTTCAGCTTGAAGAGGATGCCGTCCCGAAAACAGACAGG QPGKVLGDQRRPSLPALHFIKGAGKKESSRHGGPHCNVFVEH|agpagpagqrlaahrhrhewdrskalgqvqqqgvqleedavpktd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE FALSE Breakpoint cluster region protein Atypical BCR P11274 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 133589842,133589842,133589842|133589842 TRUE,TRUE,TRUE|TRUE 23595986,23634728,23634728|23651611 FALSE,FALSE,FALSE|TRUE PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation 10683 POLR3E::SIN3A ENSG00000058600.16::ENSG00000169375.17 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POLR3E ENSG00000058600.16 protein_coding + + chr16:22297375-22335101:+ chr16:22318946:+ chr16:22308696-22346422:+ chr16:22330267:+ SIN3A ENSG00000169375.17 protein_coding - + chr15:75369379-75455842:- chr15:75411599:+ chr15:75661720-75748183:- chr15:75703940:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none RPC5_protein(76%)| RPC5(74%)| 1 1 2 471 367 ENST00000615879.4 unknown downstream upstream duplicates(1) GTCAGTACCTGCTGTGCCCCGGCTCAAGCGGGGTGGAGAACACGGAGCTCGTCAAGTCACCCAG___TGAGTACCTGATGATGCTGATGCCACCCAGCCAGGAG...GAA___AGACAAGCCTGTGGCCCCCAGCAACGTCCTGTCGATGGCCCAGCTGCGCACGCTGCCCCTGGCCGATCAGATCAAGATCCTGATGAAGAATG___TGAAGGTCATGCCTTTTGCCAACTTGATGAGCCTCCTGGGCCCCTCCATCGATTCCGTGGCTGTTCTGCGGGGCATCCAGAAGGTGGCGATGTTGGTCCAAGGGAACTGGGTGGTGAAGAG|GTTGATTGTTCTGCAAGGATGGGGCCGTTCCCAACGAGATTGTCACTGGTGTGTGAGGCTGGACCGGCGGAGAACGTGGGGATGCATACGGTGGAAGTGGGGGAGTCTGCTGACTGGCCGGAGTATGTGCTTGCAGTTGGGAGGGCTAGAAAGAAAAGAAATCTTTATTCTCTTCAGATGCATAGATGAGTTGATACAAGGAAAGTTCAAACTAAAGAGAAACAAGGTGTCAAC KDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKr|livlqgwgrsqrdchwcvrldrrrtwgcirwkwgslltgrsmclqlgglerkeifilfrcideliqgkfklkrnkvs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10707 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1893 TRUE 736 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59931722:+ chr17:57970407-58027935:+ chr17:58009083:+ VMP1 ENSG00000062716.13 protein_coding + - chr17:59707192-59842255:+ chr17:59804613:- chr17:57784553-57919616:+ chr17:57881974:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_kinase_domain(53%)| Kinase-like(1%),PK_Tyr_Ser-Thr(80%),Pkinase(79%)| 1 4 5 446 19 ENST00000225577.9 unknown downstream downstream mismappers(3) GTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTG___GAGGAGAACTATTTATGCA...CCTG___CTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAG|CTGGAGTCTCACTGTCGCCCAGGCTGCAGTGAGTGAAGTGGTGCGATCTTGGCTCACTGCAACATCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACACCGCAACGCCCGGATGATTTTTTGTATTTTTAGTAGAGATAGAGTTTCACCGTGTTGCCCAGGCTGGTGTCAAACTCCTGAGCTTAGGCGATCCACCCGCCTCAGCCTCCCAAAGTGCTGG CFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQ|agvslsprlq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10708 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1893 TRUE 736 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59914703:+ chr17:57970407-58027935:+ chr17:57992064:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Protein_kinase_domain(14%)|SNARE_associated_Golgi_protein(58%) PK_Tyr_Ser-Thr(8%),Pkinase(8%)| 1 0 0 283 1112 ENST00000225577.9 ENST00000262291.9 downstream upstream none GGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAAC VFQVRKVTGANTGKIFAMKVLKK|DFASRAKLAVQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE|FALSE,FALSE,TRUE|FALSE,TRUE|FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE,TRUE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10709 MOB3A::AP3D1 ENSG00000172081.14::ENSG00000065000.20 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MOB3A ENSG00000172081.14 protein_coding - - chr19:2071036-2096673:- chr19:2085175:- chr19:2071035-2096672:- chr19:2085174:- AP3D1 ENSG00000065000.20 protein_coding - - chr19:2100988-2164468:- chr19:2138714:- chr19:2100987-2164467:- chr19:2138713:- chr19:2078786 chr19:2141146 NA NA chr19:2078785 chr19:2141145 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |AP-3_complex_subunit_delta-1_(100%),Adaptin_N_terminal_region(99%) |AP3D1(100%),Adaptin_N(63%),Cnd1(100%) 3 5 2 170 551 ENST00000357066.8 ENST00000643116.3 upstream downstream mismatches(1) CGAAGGCGGGCGGCAGAGGCGATCAG___AAGTTTCCAAGGGTCACTTGTGTCTCGTCCGTGGGAAGACCGGGGGAGCCCAGAAGGCCTTGGTGTGGAATTCTGAGAGCTGATTCCTGCCTTGTCTTCTCCACTGTTCCTGGAGGAATCCGAGAAGAGCAGAGCGGAGGGAGCCCCAGACACG|GCAAAATACATATCTCAGTGCATTGATGAGATCAAGCAGGAGCTGAAGCAGGACAACATcGCGGTGAAGGCGAACGCGGTCTGCAAGCTGACGTAT___TTACAGATGTTGGGATACGACATCAGCTGGGCCGCCTTCAACATCATAGAAGTGATGAGTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10710 GAREM1::NOL4 ENSG00000141441.16::ENSG00000101746.16 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1894 TRUE 737 GAREM1 ENSG00000141441.16 protein_coding - - chr18:32124877-32470882:- chr18:32392895:- chr18:29704840-30050845:- chr18:29972858:- NOL4 ENSG00000101746.16 protein_coding - - chr18:33851100-34224952:- chr18:34093597:- chr18:31431064-31804916:- chr18:31673561:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Cell-cycle_sustaining__positive_selection__(20%)| CABIT(42%)| 4 3 2 28 14 ENST00000269209.7 ENST00000261592.10 upstream downstream mismatches(1) CGTAGAAGGGCTGCGGGAAAATGACTATCTGCTGATTCATTCCTGCCGCCAGTGGACCACCATCACTGCCCACAGCTTGGAGGAGGGTCACTATGTCATTGGGCCAAAGATAGAGATTCCGGTACATTATGCAG|GATGAAAGTTCAATAGAAAGTGATGAATTTGACATGAGTGATTCAACACGGATGTCAGCTGTGAACTCTGATCTTAGCTCCAATCTTGAAGAAAGAATGCAAAGTCCCCAGAATCTTCATGGCCAGCAAGATG VEGLRENDYLLIHSCRQWTTITAHSLEEGHYVIGPKIEIPVHYA|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10711 GAREM1::NOL4 ENSG00000141441.16::ENSG00000101746.16 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1894 TRUE 737 GAREM1 ENSG00000141441.16 protein_coding - - chr18:32124877-32470882:- chr18:32392895:- chr18:29704840-30050845:- chr18:29972858:- NOL4 ENSG00000101746.16 protein_coding - - chr18:33851100-34224952:- chr18:34019601:- chr18:31431064-31804916:- chr18:31599565:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Cell-cycle_sustaining__positive_selection__(20%)| CABIT(42%)| 1 0 0 28 10 ENST00000269209.7 ENST00000261592.10 upstream downstream none GAAGGGCTGCGGGAAAATGACTATCTGCTGATTCATTCCTGCCGCCAGTGGACCACCATCACTGCCCACAGCTTGGAGGAGGGTCACTATGTCATTGGGCCAAAGATAGAGATTCCGGTACATTATGCAG|ATGATTCTGCTGCAGAGAGCTTTAATGGCAATGAGACTCcGGG EGLRENDYLLIHSCRQWTTITAHSLEEGHYVIGPKIEIPVHYA|dDSAAESFNGNETp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10712 RECK::ZNF780B ENSG00000122707.12::ENSG00000128000.17 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1072 FALSE NA FALSE NA RECK ENSG00000122707.12 protein_coding + + chr9:36036913-36124455:+ chr9:36037098:+ chr9:36036910-36124452:+ chr9:36037095:+ ZNF780B ENSG00000128000.17 protein_coding - - chr19:40028260-40056231:- chr19:40036626:- chr19:40534167-40562138:- chr19:40542533:- chr9:36049660,chr9:36049657,chr9:36049658 chr19:40046956,chr19:40046959,chr19:40047094 NA NA chr9:36049657,chr9:36049654,chr9:36049655 chr19:40552863,chr19:40552866,chr19:40553001 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 1 1 5 149 437 ENST00000377966.4 ENST00000434248.6 downstream downstream mismatches(6) AGCGGCGGCAGCGGCTGCGGCCAAGCTGGGTCCGAGCATCCCGCGGCTCTGGAGCCGCCCGGCCCGGACATGGCGACCGTCCGGGCCTCTCTGCGAGGTGCGCTGCTCCTTCTGCTGGCCGTGGCGGGGGTCGCGGAGGTGGCAGGGGGCCTGGCTCCGGGCAGTGCGG|ATTTGGAGTCAAAATATGGACCTGAGAAAATATCTCCAGAAAATGATATTTTTGAAATAAATTTACCCAAACATGTTATAAAGCAAATAAGTAAAACACTTGGCCTCGAGGCCTTTTATTTTAGAAATGACTCAGAATATAGAAGTAGATTTGAGGGACGACAGGGACATCAAGAAGGATATATCAACCAGAAGATCATCAGCTATGAAGAAATGC MATVRASLRGALLLLLAVAGVAEVAGGLAPGSA|dLESKYGPEKISPENDIFEINLPKHVIKQISKTLGLEAFYFRNDSEYRSRFEGRQGHQEGYINQKIISYEEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10713 ANTXR2::CFAP299 ENSG00000163297.18::ENSG00000197826.13 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANTXR2 ENSG00000163297.18 protein_coding - - chr4:79901146-80125454:- chr4:79977621:- chr4:80822300-81046608:- chr4:80898775:- CFAP299 ENSG00000197826.13 protein_coding + - chr4:80335730-80963750:+ chr4:80381938:- chr4:81256884-81884904:+ chr4:81303092:- chr4:79954585,chr4:79954592 chr4:80401331,chr4:80401330 NA NA chr4:80875739,chr4:80875746 chr4:81322485,chr4:81322484 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Anthrax_receptor_C-terminus_region(87%),Anthrax_receptor_extracellular_domain(100%),von_Willebrand_factor_type_A_domain(100%)| Ant_C(0%),Anth_Ig(100%),VWA(100%),VWA_2(100%)| 3 1 2 457 2 ENST00000403729.7 unknown upstream downstream mismatches(1) CAAAAATGCTGTGGTGAAGATTCCTGAAGAAACAGAGGAACCCATCAGGCCTAGACCACCTCGACCCAAACCCACACACCAGCCTCCTCAGACAAAATGGTACACCCCAATTAAG___GGTCGTCTTGATGCTCTCTGGGCTTTGTTGAGGCGGCAGTATGACCGGGTTTCTTTGATGCGACCTCAGGAAGGAGATGAG|GAATGCAGACTATAGATAGCTGATAGATAGAAGGAAGATAGTAGAAGGAAAAAGGAACAGGAGGAAGG KNAVVKIPEETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE|ecrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10714 SH2B3::GRAMD4 ENSG00000111252.11::ENSG00000075240.17 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1895 TRUE 738 SH2B3 ENSG00000111252.11 protein_coding + + chr12:111405923-111451623:+ chr12:111420488:+ chr12:111843727-111889427:+ chr12:111858292:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46672843:+ chr22:46971909-47075687:+ chr22:47068740:+ chr12:111444083 chr22:46672172 NA NA chr12:111881887 chr22:47068069 NA NA sense sense unknown intron CDS/splice-site translocation high none PH_domain(20%),Phenylalanine_zipper(100%)|GRAM_domain(100%) PH(5%),Phe_ZIP(100%)|GRAM(100%) 1 3 1 18 93 unknown ENST00000406902.6 downstream upstream none AGCTGGCTTAATTCCTACTGTGCTGTTGAGGCTGAAAGGTCACTGTGTTCTACTCACCTGCCAGGCTCCATCTTTGACTCAG|GACTCTATGCTGGTATCAAGTTCTTCCTCATTGATTTCATCTTTAAACGCTGCCCGAGGCTGCGCGCCAAGTACGACACGCC...CGCAGG___CTGCAGACGACCTCGTCACGGAGCTACGTACCCAGCGCACCGGCCGGCCTGGGTAAAGAGGAGGACGCCGGTCGCTTCCACAGCACCAAGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SH2B adaptor protein 3 1 Yes MPN, sAML, erythrocytosis, B-ALL leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10715 SH2B3::GRAMD4 ENSG00000111252.11::ENSG00000075240.17 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1895 TRUE 738 SH2B3 ENSG00000111252.11 protein_coding + + chr12:111405923-111451623:+ chr12:111418877:+ chr12:111843727-111889427:+ chr12:111856681:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46672843:+ chr22:46971909-47075687:+ chr22:47068740:+ chr12:111444083 chr22:46672172 NA NA chr12:111881887 chr22:47068069 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none PH_domain(20%),Phenylalanine_zipper(100%)|GRAM_domain(100%) PH(0%),Phe_ZIP(100%)|GRAM(100%) 0 1 1 133 93 ENST00000341259.7 ENST00000406902.6 downstream upstream none GGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGACAGCGGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGCTGGAGCTCTTCGACCCACCCAAG|GACTCTATGCTGGTATCAAGTTCTTCCTCATTGATTTCATCTTTAAACGCTGCCCGAGGCTGCGCGCCAAGTACGACACGCC AVLRYSLADEASMDSGARWQRGRLALRRAPGPDGPDRVLELFDPPK|dsmlvssssslisslnaargcapsttr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SH2B adaptor protein 3 1 Yes MPN, sAML, erythrocytosis, B-ALL leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10716 SH2B3::GRAMD4 ENSG00000111252.11::ENSG00000075240.17 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 1895 TRUE 738 SH2B3 ENSG00000111252.11 protein_coding + + chr12:111405923-111451623:+ chr12:111418877:+ chr12:111843727-111889427:+ chr12:111856681:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46673670:+ chr22:46971909-47075687:+ chr22:47069567:+ chr12:111444083 chr22:46672172 NA NA chr12:111881887 chr22:47068069 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none PH_domain(20%),Phenylalanine_zipper(100%)|GRAM_domain(100%) PH(0%),Phe_ZIP(100%)|GRAM(100%) 0 1 1 133 134 ENST00000341259.7 ENST00000406902.6 downstream upstream none GGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGACAGCGGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGCTGGAGCTCTTCGACCCACCCAAG|CTGCAGACGcCCTCGTCACGGAGCTACGTACCCAGgGCACCGGCCGGCCTGGGTAAAGAGGAGGACGCCGGTCGCTTCCACAGCACCAAGAAGGGCAATTTCCACGAGATCTTCAATCTGACAGAAAACGAGCGTCCGCTGGCGG___TGTGCGAGAATGGCTGGCGCTGCTGCCTCATCAACAGGGACCGGAAGATGCCCACGGAC AVLRYSLADEASMDSGARWQRGRLALRRAPGPDGPDRVLELFDPPK|LQTpSSRSYVPrAPAGLGKEEDAGRFHSTKKGNFHEIFNLTENERPLAVCENGWRCCLINRDRKMPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SH2B adaptor protein 3 1 Yes MPN, sAML, erythrocytosis, B-ALL leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 10749 CHCHD3::EXOC4 ENSG00000106554.13::ENSG00000131558.15 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1901 TRUE 739 CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:133024546:- chr7:132469631-132766850:- chr7:132709306:- EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133356330:+ chr7:132937829-133751342:+ chr7:133041084:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none MICOS_complex_subunit_MIC19/MIC25(39%)| MIC19_MIC25(19%)| 1 0 1 1761 434 ENST00000262570.10 ENST00000253861.5 upstream upstream none CGG___CTTTCGGAAAATGTGATTGATCGAATGAAGGAATCCTCTCCATCTGGTTCGAAGTCTCAGCGGTATTCTGGaGCTTATGGTGCaTCAG...CATTGGAGCAAGCCAAGAAAGAATCCGAAGATCAGAAACG|TGAGGGAtATAAATCTGCAGGACATCAAGGAAGATTTAGAATTGGATCCAGAGGAAAACAG LEQAKKESEDQKr|egyksaghqgrfrigsrgk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3654 chr7:133034860-133034915:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10750 CHCHD3::EXOC4 ENSG00000106554.13::ENSG00000131558.15 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 1901 TRUE 739 CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:133081857:- chr7:132469631-132766850:- chr7:132766617:- EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133475328:+ chr7:132937829-133751342:+ chr7:133160082:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none MICOS_complex_subunit_MIC19/MIC25(8%)| none 1 0 0 1316 232 ENST00000262570.10 ENST00000253861.5 upstream upstream none GCGCCTTCTCCTTGCTTCTGGGGGTCGTGGCCTTGCTCCCGCTGTGCGGGAAAAGAATCCAGGCCCTTCCACGCGCGTGTGGGTGCGGGGGCCCCGAAGTG...CCAGCACCCGCCGGGTCACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCGG|ATGCTATTAACTGAGTACTTGGATATGAAAAAT STRRVTFEADENENITVVKGIR|MLLTEYLDMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10764 GLCCI1::JAZF1 ENSG00000106415.13::ENSG00000153814.13 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GLCCI1 ENSG00000106415.13 protein_coding + + chr7:7968796-8094272:+ chr7:8071131:+ chr7:8008427-8133902:+ chr7:8110761:+ JAZF1 ENSG00000153814.13 protein_coding - - chr7:27830573-28180795:- chr7:27840867:- chr7:27870192-28220414:- chr7:27880486:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Protein_Family_FAM117(73%)| FAM117(81%)|Zn-C2H2_12(100%) 1 1 0 148 66 ENST00000223145.10 ENST00000283928.10 downstream downstream none GTCACCTCTTCATGGCAACCATATAACAATCAGTCACACTCAG___GCTACTGGATCAAGGTCAGTTCCTATGCCACTGTCAAATATATCAGTGCCAAAATCAT...CCGGAATCCCAGGATGGTAGCCCTTGCTCAACAGAAGATTTGCTCTATGATCGTGATAAAG|GCAGCGAGTATGACGAGGAGGAGGTGGACTATGAGGAGTCGGACAGCG...CATCAGCTCCGAAGCCATCCTCAGCTCCATGTGCATGAATGGAGGGGAAGAGAAGCCTTTTGCCTGCCCAGTTCCTGGATGTAAAAAGAGATACAAG___AATG PESQDGSPCSTEDLLYDRDK|gSEYDEEEVDYEESDS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE juxtaposed with another zinc finger gene 1 2 endometrial stromal tumour mesenchymal fusion translocation 10796 AFF1::KMT2A ENSG00000172493.23::ENSG00000118058.25 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1076 FALSE NA FALSE NA AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87084164:+ chr4:87856154-88062191:+ chr4:88005316:+ KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118484183:+ chr11:118307171-118397547:+ chr11:118354898:+ chr4:87088174 chr11:118482962 NA NA chr4:88009326 chr11:118353677 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none AF-4_proto-oncoprotein_N-terminal_region(69%)|F/Y-rich_N-terminus(100%),F/Y_rich_C-terminus(100%),PHD-finger(100%),PHD-like_zinc-binding_domain(100%),SET_domain(100%) AF-4(55%)|FYRC(100%),FYRN(100%),PHD(100%),SET(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%) 3 3 5 74 15 ENST00000395146.9 ENST00000649699.1 downstream upstream duplicates(3) TCAAGATCAGGCCCCTAGTGAATCCCCTGAACTGAAACCACTGCCGGAGGACTATCGACAGCAGACCTTTGAAAAAACAGACTTGAAAGTGCCTGCCAAAGCCAAGCTCACCAAACTGAAGATGCCTTCTCAGTCAGTTGAG___CAGACCTACTCCAATGAAGTCCATTGTGTTGAAGAGATTCTGAAG|GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAG...GGAGGACCAGCTGGAAAATTGGTGTTGTCGTCGTTGCAAATTCTGTCACGTTTGTGGAAGGCAACATCAGGCTACAAAG___CAGCTGCTGGAGTGTAATAAG QDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEQTYSNEVHCVEEILK|EKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKedceaenvwemg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other 10797 KMT2A::AFF1 ENSG00000118058.25::ENSG00000172493.23 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1077 TRUE 1907 TRUE 740 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87089984:+ chr4:87856154-88062191:+ chr4:88011136:+ chr11:118482961,chr11:118482962,chr11:118482961 chr4:87087934,chr4:87087932,chr4:87087932 NA NA chr11:118353676,chr11:118353677,chr11:118353676 chr4:88009086,chr4:88009084,chr4:88009084 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman CXXC_zinc_finger_domain(100%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(30%),AF4_interaction_motif(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AF-4(35%),AF-4_C(100%),AF4_int(100%) 2 2 5 13 91 ENST00000710560.1 ENST00000395146.9 downstream upstream duplicates(1),mismappers(1) CTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAA...AGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG|GAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAGCCATCCAAGTTTCCTTTCCCTACAAAG___GACTCTCAGCATGTCAGTTCTGTAACCCAAAACCAAA___AACAATATGATACATCTTCAAAAACTCACTCAAATTCTCAGCAAGGAACGTCATC___CATGCTCGAAGACGACCTTCAGCTCAGTGACAGTGAGGACAGTGACAGTGAACAA___ACCCCAGAGAAGCC SKQKKVAPRPSIPVKQKPKEK|EMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQKQYDTSSKTHSNSQQGTSSMLEDDLQLSDSEDSDSEQTPEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 10798 KMT2A::AFF1 ENSG00000118058.25::ENSG00000172493.23 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1907 TRUE 740 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482092:+ chr11:118307171-118397547:+ chr11:118352807:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87089984:+ chr4:87856154-88062191:+ chr4:88011136:+ chr11:118482961,chr11:118482962,chr11:118482961 chr4:87087934,chr4:87087932,chr4:87087932 NA NA chr11:118353676,chr11:118353677,chr11:118353676 chr4:88009086,chr4:88009084,chr4:88009084 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high Mitelman CXXC_zinc_finger_domain(100%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(30%),AF4_interaction_motif(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AF-4(35%),AF-4_C(100%),AF4_int(100%) 1 1 5 18 91 ENST00000710560.1 ENST00000395146.9 downstream upstream duplicates(1) CGAAAGCCCGTCGAGGAAAAGAGTGAAGAAGGGAATGTCTCGGCCCCTGGGCCTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG|GAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAGCCATCCAAGTTTCCTTTCCCTACAAAG___GACTCTCAGCATGTCAGTTCTGTAACCCAAAACCAAA___AACAATATGATACATCTTCAAAAACTCACTCAAATTCTCAGCAAGGAACGTCcTC RKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPES|gndpfmaasfdsntya* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 10804 ATP9B::RCAN1 ENSG00000166377.21::ENSG00000159200.18 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATP9B ENSG00000166377.21 protein_coding + + chr18:79069285-79378287:+ chr18:79096649:+ chr18:76829285-77138287:+ chr18:76856649:+ RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34523710:- chr21:35885440-35987412:- chr21:35896008:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |Calcipressin(90%) |Calcipressin(11%) 0 2 0 33 163 ENST00000307671.12 ENST00000313806.9 downstream downstream none TGCAAAGGAAAAGAGGACTGGAGTGGTTTGTCTGTGATGGCTGGAAGTTCCTCTGTACCAG|GCCAAATTTGAGTCCCTCTTTAGGACGTATGACAAGGACATCACCTTTCAGTATTTTAAGAGCTTCAAACGAGTCAGAATAAACTTCAGCAACCCCTTCTCCGCAGCAGATGCCAGGCTCCAGCTGCATAAGACTGAGTTTCTG...ATAGGAAGCTCACACCTGGCTCCGCCAAATCCAGACAAGCAGTTTCTGATCTCCCCTCCCGCCTCTCCGCCAGTGGGATGGAAACAAGTGGAAGATGCGAC QRKRGLEWFVCDGWKFLCTr|pnlspslgrmtrtspfsilrasnese* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10805 ATP9B::ENSG00000288711 ENSG00000166377.21::ENSG00000288711.1 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATP9B ENSG00000166377.21 protein_coding + + chr18:79069285-79378287:+ chr18:79096649:+ chr18:76829285-77138287:+ chr18:76856649:+ ENSG00000288711 ENSG00000288711.1 protein_coding - - chr21:34511122-34614913:- chr21:34523710:- chr21:35883420-35987212:- chr21:35896008:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none |Calcipressin(11%) 0 2 0 33 163 ENST00000307671.12 ENST00000684114.1 downstream downstream none TGCAAAGGAAAAGAGGACTGGAGTGGTTTGTCTGTGATGGCTGGAAGTTCCTCTGTACCAG|GCCAAATTTGAGTCCCTCTTTAGGACGTATGACAAGGACATCACCTTTCAGTATTTTAAGAGCTTCAAACGAGTCAGAATAAACTTCAGCAACCCCTTCTCCGCAGCAGATGCCAGGCTCCAGCTGCATAAGACTGAGTTTCTG...ATAGGAAGCTCACACCTGGCTCCGCCAAATCCAGACAAGCAGTTTCTGATCTCCCCTCCCGCCTCTCCGCCAGTGGGATGGAAACAAGTGGAAGATGCGAC QRKRGLEWFVCDGWKFLCTr|pnlspslgrmtrtspfsilrasnese* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10809 ENSG00000285827::AFF1 ENSG00000285827.1::ENSG00000172493.23 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285827 ENSG00000285827.1 protein_coding + + chr11:118401602-118482737:+ chr11:118482450:+ chr11:118272317-118353452:+ chr11:118353165:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87090008:+ chr4:87856154-88062191:+ chr4:88011160:+ chr11:118482961,chr11:118482962,chr11:118482961 chr4:87087934,chr4:87087932,chr4:87087932 NA NA chr11:118353676,chr11:118353677,chr11:118353676 chr4:88009086,chr4:88009084,chr4:88009084 NA NA sense sense unknown 3'UTR CDS translocation low Mitelman CXXC_zinc_finger_domain(100%),Mitochondrial_ATP_synthase_g_subunit(100%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(29%),AF4_interaction_motif(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AF-4(35%),AF-4_C(100%),AF4_int(100%) 0 0 10 15 93 ENST00000648261.1 ENST00000395146.9 downstream upstream duplicates(1) CGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTG...|...CCTTTGACAGCAATACATACGCCTAGTACAGCTGAGCCATCCAAGTTTCCTTTCCCTACAAAG___GACTCTCAGCATGTCAGTTCTGTAACCCAAAACCAAA___AACAATATGATACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 10835 BNC2::ENSG00000237153 ENSG00000173068.19::ENSG00000237153.4 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BNC2 ENSG00000173068.19 protein_coding - - chr9:16409503-16870843:- chr9:16704753:- chr9:16409501-16870841:- chr9:16704751:- ENSG00000237153 ENSG00000237153.4 lncRNA + - chr9:16917511-17114122:+ chr9:16978315:- chr9:16917509-17114120:+ chr9:16978313:- chr9:16618118,chr9:16618114 chr9:16991724,chr9:16991724 NA NA chr9:16618116,chr9:16618112 chr9:16991722,chr9:16991722 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 5 19 178 92 ENST00000471301.3 unknown upstream downstream duplicates(2) CTTTTTCCTAAACTGTGGCTGTTTAAAGTCTTGGAGTCTGGACAATTAACAGCTGAAGAAAATATGACAAGACACACGCAAAGAGGTTGGGAGATAGAGAGGAGGAGTGCGCCAGAAAGGAGCTGAGCTGCCTTCTTGTGTAAACTGCCTGAGAGCGGGCCCCCTCCCCTGGCCTCCGTCCCTGTCCCCCCTTCCCCAAGGCTGTGTTCTGCTGTCTGCCCGAAGGCCAGGACTGATCTGTTAACCTTGCACCACTGGCTGGGAGGCCGCTGCAGCTCATG|TCTCCCTCTGATGCCAAGCCGAAGCTGGACAGTACTGCTGCCATCTGGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCTTGCCAAGTGCCTGCGATTGCAGGCGCGCACCGCCACGCCTGACTGGTTTTCGTATTTTTTTGGTGGAGACGGGGATTCGCTGTGTTGGCcGGGCTGGTCTCCAGCTCTTAACCGCGAGTGATCCGCCAGCCTCGGCCTCCCGAGGTGCCGGGATTGCAGA M|spsdakpkldstaaiwahcnlpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10837 MICALL2::MAD1L1 ENSG00000164877.19::ENSG00000002822.16 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1083 FALSE NA FALSE NA MICALL2 ENSG00000164877.19 protein_coding - - chr7:1428465-1459470:- chr7:1459184:- chr7:1468101-1499106:- chr7:1498820:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1816228:- chr7:1855429-2272878:- chr7:1855864:- chr7:1454695 chr7:1876719 NA NA chr7:1494331 chr7:1916355 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calponin_homology_(CH)_domain(42%)|Mitotic_checkpoint_protein(7%) CAMSAP_CH(0%),CH(1%)|MAD(0%) 4 4 4 75 104 ENST00000297508.8 ENST00000406869.5 upstream downstream duplicates(1) GGGCGCTGCAACAGTGGTGCCGGCAGCAGTGCGAGGGCTACCGCGACGTGAATATCTGCAACATGACCACGTCGTTCCGCGACGGCCTGGCTTTCTGCGCCATCCTGCACCGCCACCGGCCCGACCTCAT|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGGGGCATAGCCGGAGCCACTCTGCTTGGCCTGACCTGCAGGTCCCCTGCCCCGCCAGCCACAGGCTGGGTGCACGTCCTGCCTCTCCAGCCCCACAGGGCAGC...AGACACGCTGGGACCTACGTCGGGCTTCCTGCTGGGGCGtCCAGCACCCTCTCCACGTGCAGACCCCATGCGTCCCGGAGCCTGGTGTGTGGGCGTCGGCC ALQQWCRQQCEGYRDVNICNMTTSFRDGLAFCAILHRHRPDLm|ppaprvprcsywrqsshtpwasssrctcgartaslpssarspssssaarpwrslqarghsrshsawpdlqvpcpashrlgarpaspapqg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10838 MICALL2::ENSG00000286192 ENSG00000164877.19::ENSG00000286192.1 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MICALL2 ENSG00000164877.19 protein_coding - - chr7:1428465-1459470:- chr7:1459184:- chr7:1468101-1499106:- chr7:1498820:- ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:1816228:- chr7:1855440-2281850:- chr7:1855864:- chr7:1454695 chr7:1876719 NA NA chr7:1494331 chr7:1916355 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Calponin_homology_(CH)_domain(42%)| CAMSAP_CH(0%),CH(1%)|MAD(0%) 4 4 4 75 104 ENST00000297508.8 ENST00000651235.1 upstream downstream duplicates(1) GGGCGCTGCAACAGTGGTGCCGGCAGCAGTGCGAGGGCTACCGCGACGTGAATATCTGCAACATGACCACGTCGTTCCGCGACGGCCTGGCTTTCTGCGCCATCCTGCACCGCCACCGGCCCGACCTCAT|GCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAGCCTGCAGGCTCGGGGGCATAGCCGGAGCCACTCTGCTTGGCCTGACCTGCAGGTCCCCTGCCCCGCCAGCCACAGGCTGGGTGCACGTCCTGCCTCTCCAGCCCCACAGGGCAGC...AGACACGCTGGGACCTACGTCGGGCTTCCTGCTGGGGCGtCCAGCACCCTCTCCACGTGCAGACCCCATGCGTCCCGGAGCCTGGTGTGTGGGCGTCGGCC ALQQWCRQQCEGYRDVNICNMTTSFRDGLAFCAILHRHRPDLm|ppaprvprcsywrqsshtpwasssrctcgartaslpssarspssssaarpwrslqarghsrshsawpdlqvpcpashrlgarpaspapqg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10848 PEPD::CHST8 ENSG00000124299.16::ENSG00000124302.13 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PEPD ENSG00000124299.16 protein_coding - - chr19:33386950-33521823:- chr19:33462995:- chr19:33877856-34012729:- chr19:33953901:- CHST8 ENSG00000124302.13 protein_coding + - chr19:33621953-33773509:+ chr19:33639080:- chr19:34112859-34264414:+ chr19:34129986:- chr19:33422207 chr19:33653852 NA NA chr19:33913113 chr19:34144758 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Aminopeptidase_P__N-terminal_domain(100%),Metallopeptidase_family_M24(11%)| AMP_N(100%),Peptidase_M24(16%)| 2 1 1 860 3 ENST00000698361.1 unknown upstream downstream none CAG___GAGTCCTTCTTTCACTGGGCGTTCGGTGTCACTGAGCCAGGCTGCTATGGTGTCATCGATGTTGACACTGGGAAGTCGACCCTGTTTGTGCCCAGGCTTCCTGCCAGCCATGCCACCTGGATGGGAAA___GATCCATTCCAAGGAGCACTTCAAGGAGAAGTATGCCGTGGACGACGTCCAGTACGTAGATGAG...ACCGTGAG___GTAATGAAGGCTGTAAAAGTGGGAATGAAAGAATATGAGTTGGAAAG|GATCACCTGCTGTGTGCTAGGACTGGAGAGAGGCTCCTGTCACCTGCAAGCCACCTTTAAGCACAATATTTGACTGTTTCCTGGCTGACAGCAATTTTAGAAGAAAGGTCAGCAGCAACAAGAAATCTTCTGATCCCCAGCCAT...TGGAGAACCACGAAGGTGAACTATAAATTACAAAGCCCTGGCTGGCTGCCAGGGCCCCAGGAAGCTACATTTAGCATATCATTCTCCCAGCAGCAGGATGA REVMKAVKVGMKEYELEr|itccvlglergschlqatfkhni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10853 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1916 TRUE 741 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 0 1 3 427 ENST00000503441.1 ENST00000265070.7 upstream downstream none CTTAAGCCTATGATGCAGTTGTTTTCCCAGTCTTGGGAGCTGGCAGATG___CCATTACCCAGGTCAGGAGATAGAACCTTGCCAGCTATACCCTGAAGCTGTT...AGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 10854 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1916 TRUE 741 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32121495:- chr5:32103551-32122047:- chr5:32121601:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 0 1 0 0 427 ENST00000503441.1 ENST00000265070.7 upstream downstream none CTCCCAATTACAGTCTTCATAAGA|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGG...AATTGCATTATCAGTTAAGAAATGTACGGGAACGATTAGCTAAAAACCTGGTGGAAAAGGGTGTATTGACAACAGAGAAACAGAACTTCCTACTTTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 10864 ZKSCAN7::KIF15 ENSG00000196345.13::ENSG00000163808.17 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1919 TRUE 742 ZKSCAN7 ENSG00000196345.13 protein_coding + + chr3:44555193-44594173:+ chr3:44570665:+ chr3:44596685-44635665:+ chr3:44612157:+ KIF15 ENSG00000163808.17 protein_coding + + chr3:44761721-44873376:+ chr3:44814911:+ chr3:44803213-44914868:+ chr3:44856403:+ chr3:44570802,chr3:44570802 chr3:44814617,chr3:44814614 NA NA chr3:44612294,chr3:44612294 chr3:44856109,chr3:44856106 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none KRAB_box(96%),SCAN_domain(100%),Zinc_finger__C2H2_type(38%)|Hyaluronan_mediated_motility_receptor_C-terminal(100%) KRAB(9%),SCAN(100%),zf-C2H2(38%),zf-C2H2_4(100%),zf-C2H2_6(66%)|HMMR_C(100%) 1 0 5 10 44 ENST00000447279.2 ENST00000326047.9 downstream upstream none CCCAGCTCATTGTTCATCTCAGAgCCCACACAGGGGAAAAACCCTATGAATGCAGTGAGTGTGGAAAGGCCTATAGGCACAGCTCCCATCTCATTCAACACCAGAGACTCCATAATGGGGAGAAACCCTATAAATGTAATGAATGTGCAAAAGCCTTTACTCA...AGAGAACCCATACTGGGGAGAAACCTTATGAATGCAATGAGTGTGGAGAGGCATTCATTCGAAGCAAAAGTCTTGCTCGACATCAGGTCCTGCACACTG|TTTTGAAAAGTGAGGTACATGACCTGCGAGTAGTCCTTCATTCTGCTGACAAGGAGCTTTCTTCAGTGAAATTGGAATATAGTTCATTCAAAAC...ACAAgCcTTCCGAAAcACACATGCATGTACAGCTTCAATTAGATAATCTCAG___GTTAGAAAACGAAAAGCTGCTTGAGAGCAAAGCCTGCCTACAGGATTCCTATGACAACTTACAAGAAATAATGAAATTTGAG RTHTGEKPYECNECGEAFIRSKSLARHQVLHT|vLKSEVHDLRVVLHSADKELSSVKLEYSSFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-564 chr3:44861888-44861981:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10865 ZKSCAN7::KIF15 ENSG00000196345.13::ENSG00000163808.17 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1919 TRUE 742 ZKSCAN7 ENSG00000196345.13 protein_coding + + chr3:44555193-44594173:+ chr3:44568433:+ chr3:44596685-44635665:+ chr3:44609925:+ KIF15 ENSG00000163808.17 protein_coding + + chr3:44761721-44873376:+ chr3:44826039:+ chr3:44803213-44914868:+ chr3:44867531:+ chr3:44570802,chr3:44570802 chr3:44814617,chr3:44814614 NA NA chr3:44612294,chr3:44612294 chr3:44856109,chr3:44856106 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through low none KRAB_box(95%),SCAN_domain(100%)|Hyaluronan_mediated_motility_receptor_C-terminal(100%) KRAB(0%),SCAN(100%)|HMMR_C(100%) 1 0 0 14 54 ENST00000419137.2 ENST00000326047.9 downstream upstream duplicates(1) GCTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG___GATACTGT...AATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG|GTTAGAAAACGAAAAGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-564 chr3:44861888-44861981:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10866 PRKG1-AS1::PRKG1 ENSG00000236671.9::ENSG00000185532.20 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PRKG1-AS1 ENSG00000236671.9 lncRNA - - chr10:52230398-52314507:- chr10:52309448:- chr10:53990158-54074267:- chr10:54069208:- PRKG1 ENSG00000185532.20 protein_coding + - chr10:50990888-52298423:+ chr10:52197664:- chr10:52750648-54058183:+ chr10:53957424:- NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/read-through/5'-5' low none none none 0 0 6 46 20 ENST00000452247.7 unknown upstream downstream duplicates(1) GTGAGATCAAAGTGGCCGGGACCAAAGCGGACAGGGTCCAACGTGCCAG___CACTGCCAAGAGAAGGCCTTTTGTACTCAGGTTAAATAAGAACATCCTGCAAGGAGTCTGTTCTTTTATGCAGCCTAAAGATCAAGTAAT...|...TATACTGACCCAGTGTGACCACGCTGCTATTCGAAGACTTACTCAAAGTTTTCAAACAGACTAACCATGTGGGACTGTGATTTAGCAAGGAAAACAGCCAGAATAAACATGTCAGTGTCTCCGTTTTATGGTGGCTTCATGTGCAGCATTGTGACCTATACCTCGGAGTTTTTCTTATACCAGATGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10882 ENOSF1::DLGAP1 ENSG00000132199.20::ENSG00000170579.19 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENOSF1 ENSG00000132199.20 protein_coding - - chr18:670318-712662:- chr18:688574:- chr18:670318-712662:- chr18:688574:- DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:4005201:- chr18:3496030-4455307:- chr18:4005201:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Enolase_C-terminal_domain-like(5%),Mandelate_racemase_/_muconate_lactonizing_enzyme__N-terminal_domain(100%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) MR_MLE_C(12%),MR_MLE_N(100%)|GKAP(100%) 17 22 17 165 36 ENST00000383578.7 ENST00000582051.1 upstream downstream duplicates(2),mismatches(1) GAGGAGGATGCCCTAG___AAATACTGCAGAAAGGTCAAATTGGTAAAAAAGAAAGAG___AGAAGCAAATGCTGGCACAAGGATACCCTGCTTACACGACATCGTGCGCCTGGCTGGGGTACTCAGATGACACGTTGAAGCAG___CTCTGTGCCCAGGCGCTGAAGGATGGCTGGACCAG|GCTAAATCTCTTCTGGGATCCACTGAATGCCACTAGAGGGTCTGCTCGAGAGAATTCCTGATTGAATGACAACGGCGCTAAGAACA___...TTCTCCTCTGGACTCTTCCAAAACATTTAGACATTTACTG EEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTr|lnlfwdplnatrgsarens* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10883 ARVCF::TXNRD2 ENSG00000099889.14::ENSG00000184470.21 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARVCF ENSG00000099889.14 protein_coding - - chr22:19969896-20016823:- chr22:19977415:- chr22:19957419-20004346:- chr22:19964938:- TXNRD2 ENSG00000184470.21 protein_coding - - chr22:19875517-19941820:- chr22:19919599:- chr22:19863040-19929343:- chr22:19907122:- chr22:19976711,chr22:19976718 chr22:19921826,chr22:19921830 NA NA chr22:19964234,chr22:19964241 chr22:19909349,chr22:19909353 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Armadillo/beta-catenin-like_repeat(52%)|Pyridine_nucleotide-disulphide_oxidoreductase(92%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(100%) Arm(77%)|FAD_binding_2(5%),GIDA(27%),Pyr_redox(100%),Pyr_redox_2(63%),Pyr_redox_dim(100%) 12 9 35 323 403 ENST00000263207.8 ENST00000400525.6 upstream downstream mismappers(1),mismatches(4) CTGCAGTCGGCTGTGGGCCGGAAGGACACTGACAACAAG___TCGGTGGAGAACTGCGTGTGCATCATGCGGAACCTGTCCTACCACGTGCACAAGGAGGTGCCCGGGGCCGACAGGTACCAGGAGGCCGAGCCCGGGCCCCTGGGCAGTGCTGTAGGCTCCCAGCGCCGGAGGCGGGATGATGCCAGCTGCTTTGGAGGCAAGAAGGCCAAAG|CCGCtCAGCTGGGAAGGAAGGTGtCCGTGGTGGACTACGTGGAACCTTCTCCCCAAG___GCACCCGGTGGGGCCTCGGCGGCACCTGCGTCAACGTGGGCTGCATCCCCAAGAAGCTGATGCACCAGGCGGCACTGCTGGGAGGCCTGATCCAAGATGCCCCCAACTATGGCTGGGAGGTGGCCCAGCCCGTGCCGCATGACTG___GAGGAAGATGGCAGA LQSAVGRKDTDNKSVENCVCIMRNLSYHVHKEVPGADRYQEAEPGPLGSAVGSQRRRRDDASCFGGKKAK|aAQLGRKVsVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10884 KIF3A::ENSG00000251205 ENSG00000131437.16::ENSG00000251205.3 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1923 TRUE 743 KIF3A ENSG00000131437.16 protein_coding - - chr5:132692628-132737638:- chr5:132699171:- chr5:132028320-132073330:- chr5:132034863:- ENSG00000251205 ENSG00000251205.3 lncRNA + + chr5:143531331-143598434:+ chr5:143559005:+ chr5:142910896-142977999:+ chr5:142938570:+ chr5:132695424,chr5:132695426 chr5:143555110,chr5:143555108 NA NA chr5:132031116,chr5:132031118 chr5:142934675,chr5:142934673 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Kinesin_motor_domain(100%)| Kinesin(100%),Microtub_bd(100%)| 11 10 16 128 36 ENST00000378746.8 ENST00000667084.1 upstream upstream duplicates(1),mismatches(2) GAAGACATAGGAGAATGGCAGCTA___...AAATGTGTTGCTTATACAGGAAATAACATGAGGAAGCAAACCCCAGTACCTGATAAAAAGGAGAAAGAT___CCCTTTGAGGTGGACCTTTCTCACGTGTATCTTGCCTATACTGAGGAGAGTCTGCGTCAGTCTTTGATGAAACTAGAAAGACCACGAACTTCAAAGGGGAAAGCAAGGCCAAAGACAGGGAGAAG|AAGCATTTGGCCTGAGAAGATACCACACCCTCTCCATCGTTTTCATAAGAATTGCCTACCATCTACAGATGAACCCACCCAAGCAAAGCCAGCATGCTCTGCATAGGAAGCCTGAGATGATGGAGTCCACATGCTGTTTATTTAGTCATCATAGCTTTATGACTTGAAAATGTTGACAGAGACATGCATCTACCAGTCACCATGGCAGGG KCVAYTGNNMRKQTPVPDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRr|siwpekiphplhrfhknclpstdeptqakpacsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10885 KIF3A::ENSG00000251205 ENSG00000131437.16::ENSG00000251205.3 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1923 TRUE 743 KIF3A ENSG00000131437.16 protein_coding - - chr5:132692628-132737638:- chr5:132699171:- chr5:132028320-132073330:- chr5:132034863:- ENSG00000251205 ENSG00000251205.3 lncRNA + + chr5:143531331-143598434:+ chr5:143556787:+ chr5:142910896-142977999:+ chr5:142936352:+ chr5:132695424,chr5:132695426 chr5:143555110,chr5:143555108 NA NA chr5:132031116,chr5:132031118 chr5:142934675,chr5:142934673 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Kinesin_motor_domain(100%)| Kinesin(100%),Microtub_bd(100%)| 0 2 17 128 4 ENST00000378746.8 ENST00000667084.1 upstream upstream mismatches(1) GAAGACATAGGAGAATGGCAGCTA___AAATGTGTTGCTTATACAGGAAATAACATGAGGAAGCAAACCCCAGTACCTGATAAAAAGGAGAAAGAT___CCCTTTGAGGTGGACCTTTCTCACGTGTATCTTGCCTATACTGAGGAGAGTCTGCGTCAGTCTTTGATGAAACTAGAAAGACCACGAACTTCAAAGGGGAAAGCAAGGCCAAAGACAGGGAGAAG|AACTCAACACTGCAGTGCTTAGACAATATGTCCTGTAAGACGGTACTGTTTGTGAACTACAAGATATATTTTCCATGATTCCATGGATTGTTGGACCCTGTAGCCAAGACTAG...AAG___AAGCATTTGGCCTGAGAAGATACCACACCCTCTCCATCGTTTTCATAAGAATTGCCTACCATCTACAGATGAACCCACCCAAGCAAAGCCAGCATGCTCTGCATAGGAAGCCTGAGATGATGGAGTCCA EDIGEWQLKCVAYTGNNMRKQTPVPDKKEKDPFEVDLSHVYLAYTEESLRQSLMKLERPRTSKGKARPKTGRr|tqhcsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10886 PTPN2::SPIRE1 ENSG00000175354.20::ENSG00000134278.16 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPN2 ENSG00000175354.20 protein_coding - - chr18:12785478-12929643:- chr18:12884073:- chr18:12785477-12929642:- chr18:12884072:- SPIRE1 ENSG00000134278.16 protein_coding - + chr18:12446512-12658107:- chr18:12647470:+ chr18:12446511-12658106:- chr18:12647469:+ chr18:12879798,chr18:12879800 chr18:12629098,chr18:12629096 NA NA chr18:12879797,chr18:12879799 chr18:12629097,chr18:12629095 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 11 3 13 460 14 ENST00000327283.7 unknown upstream upstream duplicates(2),mismappers(3),mismatches(1) ATCGTGCGGGGCCTGAGCCTCTCCGCCGGCGCAGGCTCTGCTCGCGCCAGCTCGCTCCCGCAGCCATGCCCACCACCATCGAGCGGGAGTTCGAAGAGTTGGATACTCAGCGTCGCTGGCAGCCGCTGTACTTG|GCCAGGTGCAGTGGATCACACCTGTAATCCCACCACTGTGGGAAGCTGAGGCAGGAAGATCACTTGAATGGGGTTCAAGACCAGCCTGGGCAATATAGTGAGAGACCCTGTCTCTACAAAAAAATAACAAAAAAATTAGCCAGGAGTGGTGGTGTGCATTTATAGTCCCAGCTACTCAGGAGGCTGAGGTGGAAGGATCACCTGTACCCAGAAGTTCAAAGTTAC MPTTIEREFEELDTQRRWQPLYL|arcsgshl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10888 LIN52::ENSG00000258471 ENSG00000205659.12::ENSG00000258471.2 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ ENSG00000258471 ENSG00000258471.2 lncRNA - - chr14:20995837-21014822:- chr14:20999830:- chr14:21463996-21482981:- chr14:21467989:- chr14:74133212 chr14:20999959 NA NA chr14:74599915 chr14:21468118 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Retinal_tissue_protein(86%)| LIN52(9%)| 4 6 9 211 12 ENST00000555028.7 ENST00000557335.1 downstream downstream duplicates(2) GGCGTCTCCCACAGACG___GGACAGATCTGGAAGCATCTTTGCTAAGTTTTGAAAAACTTGACCGTGCCTCACCAGATCTTTGGCCAGAACAAT___TACCAGGTGTTGCTG...CTAGTTCTCCACCCAAATGGATGGCTGAGATAGAACGTGATGACATCGACATGTTGAAAG___AACTGGGGAGTCTCACCACGGCTAATTTGATGGAGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTGGGGCTGGATGAGT|GGCTTCAGCAGTCATATGCATGAACCCTGCTCCCAGGAAAACACCAGCAGAAATACAGCCCAGGAGTCTGAGGACTcGCCGGTGATGACCTAATAAAAAGCAGAAGTTACAACCCACTTGACACTGAGGAGACAGACAAAG___...AGCAGGCAGCACTCAATATCCCAAGGTTGGGGATGGTGAGAGAATCAGAGCAAGG...___TCTTATAGGTTGCAATGCTGATACTTGAACCACCCGCTTTCAGAGATTTGGGGCCACCTGGAGGTAAAGAGGTGGGGCTGAGAGG...ACTCTGTGGGAACTAGTACCCACATGAGGGAACTACCCTTTCCTGTAACCCCAGAAAAATAGCTCCAGGCATGGAAATGTCTAGTG___CAAACCCACATCAAGG SSPPKWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDE|wlqqsya* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10894 RERE::NIHCOLE ENSG00000142599.20::ENSG00000251026.2 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8495063:- chr1:8412457-8908980:- chr1:8555123:- NIHCOLE ENSG00000251026.2 lncRNA + + chr5:104079847-104406121:+ chr5:104258707:+ chr5:103415548-103741822:+ chr5:103594408:+ chr1:8479877,chr1:8479881 chr5:104185950,chr5:104185946 NA NA chr1:8539937,chr1:8539941 chr5:103521651,chr5:103521647 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none BAH_domain(100%),ELM2_domain(100%)| BAH(100%),ELM2(100%)| 3 1 11 141 4 ENST00000656437.1 unknown upstream upstream none GTACTTGAGGGCAGCAAG___GAGCATGGCGGCATTTGCAGGAATGTGTGATGGAGGCTCTACAGAGGACGGCTGTGTCGCAGCCTCTCGGGATGACACCACTCTGAATGCACTGAACACA|AGCCTGACTGACCGAGGAGAAAGAAAATACCCAATTCTATCTACTTGAAGATTTCAACATGGGACAAAGGAAATACCCAGCTTTGACACACTCAAGATATTCTGTCCCACTTGAAaTGGAAAAAGACTAAGAAGTTCATAGTCCAGAGCCACAGGCTCACTAAAATACTGACATCTAATTATCGGAGGATATAATGCTTCTTTCCTCTTTACTCCCCAATCTTTAACACCACATTACTGAAGGCCTATTATTTACAACAGCTCTTTTTACCCAATAGATCA YLRAARSMAAFAGMCDGGSTEDGCVAASRDDTTLNALNT|sltdrgerkypilst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10902 STK3::FLJ46284 ENSG00000104375.17::ENSG00000248858.7 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1927 TRUE 744 STK3 ENSG00000104375.17 protein_coding - - chr8:98371228-98942827:- chr8:98596032:- chr8:99383456-99955055:- chr8:99608260:- FLJ46284 ENSG00000248858.7 lncRNA - - chr8:92699742-92879502:- chr8:92786060:- chr8:93711970-93891730:- chr8:93798288:- chr8:98580781,chr8:98580783 chr8:92794186,chr8:92794185 NA NA chr8:99593009,chr8:99593011 chr8:93806414,chr8:93806413 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Protein_kinase_domain(98%)| ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(91%),Pkinase_fungal(100%)| 2 0 5 117 2 ENST00000523601.5 ENST00000504861.2 upstream downstream none CCTCAATACAGAAGGACATGCAAAATTGGCAGATTTTGGAGTGGCTGGTCAGTTAACA___GATACAATGGCAAAACGCAATACTGTAATAGGAACTCCATTTT...GGAAAACCTCCTTATGCTGATATACATCCAATGAGG___GCTATTTTTATGATTCCCACAAATCCACCACCAACATTCAGAAAGCCAGAACTTTGGTCCGATGATTTCACCGATTTTGTTAAAAAGTGTTTGGTGAAGAATCCTGAGCAGAGAGCTACTGCAACACAACTTTTACAG|AAGTAAGCAAACATTTTCCTCTAATTCAGATTCTTTAAACAAAAGTTGCAAATGAATGTAGCCTTCATCTATTGTAAAATTA GKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQ|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 3 STE STE20 MST Q13188 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10903 STK3::FLJ46284 ENSG00000104375.17::ENSG00000248858.7 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1927 TRUE 744 STK3 ENSG00000104375.17 protein_coding - - chr8:98371228-98942827:- chr8:98596032:- chr8:99383456-99955055:- chr8:99608260:- FLJ46284 ENSG00000248858.7 lncRNA - - chr8:92699742-92879502:- chr8:92778594:- chr8:93711970-93891730:- chr8:93790822:- chr8:98580781,chr8:98580783 chr8:92794186,chr8:92794185 NA NA chr8:99593009,chr8:99593011 chr8:93806414,chr8:93806413 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Protein_kinase_domain(98%)| ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(91%),Pkinase_fungal(100%)| 0 1 5 117 8 ENST00000523601.5 unknown upstream downstream mismappers(2) GGAAAACCTCCTTATGCTGATATACATCCAATGAGG___GCTATTTTTATGATTCCCACAAATCCACCACCAACATTCAGAAAGCCAGAACTTTGGTCCGATGATTTCACCGATTTTGTTAAAAAGTGTTTGGTGAAGAATCCTGAGCAGAGAGCTACTGCAACACAACTTTTACAG|AGACAGCGTTTCACCATGTTGGCCAGGATGGTCTGGAACTCCCAACCTCAAGTGATCCACCCCACCTCGGCTTCCCAAAGTGCTGGGACTACAGGCATGAGCCA...GACAGGAGAACCTTGAAGGAAAGTTAAATAATAAAGTATAGATAAACAAATCTACACTTTGAGAACTATAAATTTGCTACCCTTTCTAAGATCTTCCTGAGCTAtTTGTGgTCCGTAG...GAAACCTGAATCCTGAAGTAGAACTCATCATTTTCCTGAGgCCTCTTTCCACATTTATTTGATCTTTTCTCTTATTTTCGAATCCCTTCATTTCCTTCCC GKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQ|rqrftmlarmvwnsqpqvihptsasqsagttgms NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 3 STE STE20 MST Q13188 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10910 CDH12::ENSG00000253766 ENSG00000154162.15::ENSG00000253766.1 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDH12 ENSG00000154162.15 protein_coding - - chr5:21750673-22853344:- chr5:22212498:- chr5:21750782-22853453:- chr5:22212607:- ENSG00000253766 ENSG00000253766.1 lncRNA + - chr5:21616262-21779522:+ chr5:21647444:- chr5:21616371-21779631:+ chr5:21647553:- chr5:22109745,chr5:22109747 chr5:21662845,chr5:21662844 NA NA chr5:22109854,chr5:22109856 chr5:21662954,chr5:21662953 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 2 2 1 29 8 ENST00000382254.6 unknown upstream downstream mismappers(3) CTACCATCAAG___CTTTGTTACCTAACAGCTTGGCTCTTTTGGGAAATATAGACAAGCTGGAACCCAGGAGCAGTTGGGAGTTTTAAAGAATGCCAGCCTTTT...AGGAGCTCAACATAACAGGGAAAAGGAGCACAGGATGCAGCTACTTGGAGGGTGTTGATTGAAAACTTCGATCTCCCCACCCCATTCACGGTTGATTTGACGGATTTCTCACCTtGTTCACAGAGAAAATTTCAATTAAG|TATTGAAAAATCAGGCCGGACGTGGTGGCTCACATCTGTAATCCCAGCACTTTGGGAGGCTG...GAGACCAGCCTGGACAACATAGCAAAACCCTGTCTCTACTAAAAGTACAAAAATTAGCTGGGTGTTGTGGCGGTCGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGAAGAATTGCTTGAACCCGGGAAGCAGAGGTTGCAGCAAGCCGAGATTGTGCCAGTGTACTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10933 LIN52::SLC39A2 ENSG00000205659.12::ENSG00000165794.10 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ SLC39A2 ENSG00000165794.10 protein_coding + - chr14:20999255-21001871:+ chr14:20999900:- chr14:21467414-21470030:+ chr14:21468059:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon inversion/3'-3' high none Retinal_tissue_protein(86%)| LIN52(9%)| 0 2 3 211 3 ENST00000555028.7 unknown downstream downstream duplicates(1) GTTGAAAG___AACTGGGGAGTCTCACCACGGCTAATTTGATGGAGAAGGTTCGAGGCCTACAGAACCTAGCCTATCAGCTGGGGCTGGATGAGT|ACCTGCGGCTTGAAATCTCTGCTCTCACCTGCACCATGAACTTCTGAATCTGTGATTCAATTTCCTCCAGGGCTTCAGCAGTCATATGCATGAACCCTGCTCCCAGGAAAACACCAGCAGAAATACAGCCCAGGAGTCTGAGGACTcGCCGGTGATGACC...TGGGGTAGGGCTATACCTCTGGCTGCATCAATCTGGAACCATTTGAAGCAGATGGGAGTAAGGCCACAGCCCAGAGTGAGAGCCAACAGGGCAAACAGGCA...AAATGCAGACACATGCCACCGTGCCCAGCTTCTtCACTTTTTAAGAATCACAAAATCCtCTTCCATTCTTCAAAAATTTATTATTTATTATTAAAAATCTC LKELGSLTTANLMEKVRGLQNLAYQLGLDE|ylrleisaltctmnf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10934 STK3::ENSG00000253577 ENSG00000104375.17::ENSG00000253577.2 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK3 ENSG00000104375.17 protein_coding - - chr8:98371228-98942827:- chr8:98596032:- chr8:99383456-99955055:- chr8:99608260:- ENSG00000253577 ENSG00000253577.2 lncRNA + - chr8:92765651-92858297:+ chr8:92778594:- chr8:93777879-93870525:+ chr8:93790822:- chr8:98580781,chr8:98580783 chr8:92794186,chr8:92794185 NA NA chr8:99593009,chr8:99593011 chr8:93806414,chr8:93806413 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Protein_kinase_domain(98%)| ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(91%),Pkinase_fungal(100%)| 0 1 3 117 8 ENST00000523601.5 unknown upstream downstream mismappers(2) GGAAAACCTCCTTATGCTGATATACATCCAATGAGG___GCTATTTTTATGATTCCCACAAATCCACCACCAACATTCAGAAAGCCAGAACTTTGGTCCGATGATTTCACCGATTTTGTTAAAAAGTGTTTGGTGAAGAATCCTGAGCAGAGAGCTACTGCAACACAACTTTTACAG|AGACAGCGTTTCACCATGTTGGCCAGGATGGTCTGGAACTCCCAACCTCAAGTGATCCACCCCACCTCGGCTTCCCAAAGTGCTGGGACTACAGGCATGAGCCA...GACAGGAGAACCTTGAAGGAAAGTTAAATAATAAAGTATAGATAAACAAATCTACACTTTGAGAACTATAAATTTGCTACCCTTTCTAAGATCTTCCTGAGCTAtTTGTGgTCCGTAG...GAAACCTGAATCCTGAAGTAGAACTCATCATTTTCCTGAGgCCTCTTTCCACATTTATTTGATCTTTTCTCTTATTTTCGAATCCCTTCATTTCCTTCCC GKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQ|rqrftmlarmvwnsqpqvihptsasqsagttgms NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase 3 STE STE20 MST Q13188 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10939 RAB27A::CCPG1 ENSG00000069974.17::ENSG00000260916.8 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1931 TRUE 745 RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55314039:- chr15:55495164-55611311:- chr15:55606237:- CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55360944:- chr15:55632230-55700708:- chr15:55653142:- chr15:55311214,chr15:55311219 chr15:55365031,chr15:55365033 NA NA chr15:55603412,chr15:55603417 chr15:55657229,chr15:55657231 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none |Glyco_transf_22(100%) 1 0 2 14 82 ENST00000563262.5 ENST00000310958.10 upstream downstream mismappers(4) GGAGCAGGCGCAGAACAGTCGGAG___...AGTCTCGCTGTGATGCCCAGGCTGGAGTGCAATGGCGTGATTTTGGCTCACTGCAACCTCTCCCACCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAG|TCATTGAAAGAAAATCTTGCAAGGTGTTGGACACTTACTGAAGCAGAGAAGATGTCCTTTGAAACTCAGAAAACGAACCTTGCTACAGAAAATCAGTATTTAAGAGTATCCcTGGAGAAGGAAGAAAAAGCCTTATCCTCATTACAGGAAGAGTTAAACAAACTAAGAGAACAGATTAGAATATTGGAAGATAAAGGGACAAGTACTGAATTAGTTAAAGAAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10940 RAB27A::CCPG1 ENSG00000069974.17::ENSG00000260916.8 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1931 TRUE 745 RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55318931:- chr15:55495164-55611311:- chr15:55611129:- CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55360944:- chr15:55632230-55700708:- chr15:55653142:- chr15:55311214,chr15:55311219 chr15:55365031,chr15:55365033 NA NA chr15:55603412,chr15:55603417 chr15:55657229,chr15:55657231 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none |Glyco_transf_22(100%) 0 1 1 280 82 ENST00000563262.5 ENST00000310958.10 upstream downstream none TGCGGTTTCCTTTCGCCGTTTCCGAACCGAGGGATTGCTACTCGCCTTTGGCTTGGCGGTCTCTGTGCTCGGGGGTCCGAAAACTGCTGGAAGGCCCCCGGTCTCTGGAGGGGAGCAGGCGGTAGCGAGTTTAGTGACGTGGAGCAGGCGCAGAACAGTCGGAG|TCATTGAAAGAAAATCTTGCAAGGTGTTGGACACTTACTGAAGCAGAGAAGATGTCCTTTGAAACTCAGAAAACGAACCTTGCTACAGAAAATCAGTATTTAAGAGTATCCcTGGAGAAGGAAGAAAAAGCCTTATCCTCATTACAGGAAGAGTTAAACtAACTAAGAGAtCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10942 GPC6::GPC5 ENSG00000183098.12::ENSG00000179399.16 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:93227616:+ chr13:93879060-95060274:+ chr13:93879869:+ GPC5 ENSG00000179399.16 protein_coding + + chr13:91398621-92873682:+ chr13:92144830:+ chr13:92050875-93525935:+ chr13:92797083:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Glypican(6%)|Glypican(18%) Glypican(0%)|Glypican(49%) 1 1 1 259 2 ENST00000377047.9 ENST00000377067.9 downstream upstream none GAGCTGGATTTGTATGTTGCACCATGCCTTCTTGGATCGGGGCTGTGATTCTTCCCCTCTTGGGGCTGCTGCTCTCCCTCCCCGCCGGGGCGGATGTGAAGGCTCGGAGCTGCGGAGAGGTCCGCCAGGCGTACGGTGCCAAGGGATTCAGCCTGGCGGACATCCCCTACCAGGAGATCGCAG|TTGTTACAGGGTAGATCACCCAAACCTGACAAGTGGGAACTTCTTCAGCTGGGCAGTGGTGGAGGCATGGTTGAACAAGTCAGTGGGGACTGTGATGATGAAGATGGTTGCGGGGGATCAGGAAGTGGAGAAGTCAAG MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSLADIPYQEIA|vvtg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-548as chr13:92490163-92490220:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Liver hepatocellular carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma,Cholangiocarcinoma KIDNEY,LIVER,HEAD_AND_NECK,PROSTATE,LIVER,UTERUS,BILE_DUCT no_match 93879869,93879869,93879869,93879869,93879869,94482798,93879869 TRUE,TRUE,TRUE,TRUE,TRUE,FALSE,TRUE 93518535,93518535,93518535,93518535,93518535,93518535,92797083 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,TRUE YES,PARTIALLY,PARTIALLY,YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE glypican 5 2 lung adenocarcinoma epithelial TSG large_deletion 10943 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA TRUE 1932 TRUE 746 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 1 2 0 395 149 ENST00000696786.1 ENST00000220592.10 upstream downstream mismatches(1) CCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGGAGAGTTAACAG___GGAAATCGTGGAACACATGGTCCAGCACTTTAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10944 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA TRUE 1932 TRUE 746 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141000880:- chr8:141667999-142012315:- chr8:142010979:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 0 1 0 77 149 ENST00000520892.5 ENST00000220592.10 upstream downstream mismatches(1) CCGGTGGCCGTGAGGAGGTTGGGGGCCCTCGCGGAGGCCGAGAGGCTTAAGGAG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCgGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10945 RAB27A::DNAAF4-CCPG1 ENSG00000069974.17::ENSG00000261771.5 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1933 TRUE 747 RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55314039:- chr15:55495164-55611311:- chr15:55606237:- DNAAF4-CCPG1 ENSG00000261771.5 lncRNA - - chr15:55355248-55498360:- chr15:55360944:- chr15:55647446-55790558:- chr15:55653142:- chr15:55311214,chr15:55311219 chr15:55365031,chr15:55365033 NA NA chr15:55603412,chr15:55603417 chr15:55657229,chr15:55657231 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 0 2 14 82 ENST00000563262.5 ENST00000565113.5 upstream downstream mismappers(4) GGAGCAGGCGCAGAACAGTCGGAG___...AGTCTCGCTGTGATGCCCAGGCTGGAGTGCAATGGCGTGATTTTGGCTCACTGCAACCTCTCCCACCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGATTACAG|TCATTGAAAGAAAATCTTGCAAGGTGTTGGACACTTACTGAAGCAGAGAAGATGTCCTTTGAAACTCAGAAAACGAACCTTGCTACAGAAAATCAGTATTTAAGAGTATCCcTGGAGAAGGAAGAAAAAGCCTTATCCTCATTACAGGAAGAGTTAAACAAACTAAGAGAACAGATTAGAATATTGGAAGATAAAGGGACAAGTACTGAATTAGTTAAAGAAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10946 RAB27A::DNAAF4-CCPG1 ENSG00000069974.17::ENSG00000261771.5 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1933 TRUE 747 RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55318931:- chr15:55495164-55611311:- chr15:55611129:- DNAAF4-CCPG1 ENSG00000261771.5 lncRNA - - chr15:55355248-55498360:- chr15:55360944:- chr15:55647446-55790558:- chr15:55653142:- chr15:55311214,chr15:55311219 chr15:55365031,chr15:55365033 NA NA chr15:55603412,chr15:55603417 chr15:55657229,chr15:55657231 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 0 1 1 280 82 ENST00000563262.5 ENST00000565113.5 upstream downstream none TGCGGTTTCCTTTCGCCGTTTCCGAACCGAGGGATTGCTACTCGCCTTTGGCTTGGCGGTCTCTGTGCTCGGGGGTCCGAAAACTGCTGGAAGGCCCCCGGTCTCTGGAGGGGAGCAGGCGGTAGCGAGTTTAGTGACGTGGAGCAGGCGCAGAACAGTCGGAG|TCATTGAAAGAAAATCTTGCAAGGTGTTGGACACTTACTGAAGCAGAGAAGATGTCCTTTGAAACTCAGAAAACGAACCTTGCTACAGAAAATCAGTATTTAAGAGTATCCcTGGAGAAGGAAGAAAAAGCCTTATCCTCATTACAGGAAGAGTTAAACtAACTAAGAGAtCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10947 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE TRUE 1086 TRUE 1934 FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59631725,chr17:59631723 chr17:59837640,chr17:59837635 NA NA chr17:57709086,chr17:57709084 chr17:57915001,chr17:57914996 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 21 18 25 960 2816 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(2),mismappers(7),mismatches(1) GCCCGGTTCCGCCATTGCGGCTCTCCTGGCCCCTGGAGCCTCCGCCCCCGACCCGAGCTCTTTCGTCTGCCTGCCAGTTTCCTGCGTCCCCGGAGAGGATCCTGCTGAGCCCAGCCTCCCCCCTCCCCTTCTCCTCCTCTCCCTTGGAGAGCCCGGGCAGCCACTGCCCCGCAGCCCCAGTGACAGGAGGAGACCATAACCCCCGACAGCGCCATGGCCCAGATTCTGCCAATTCGTTTTCAGGAGCATCTCCAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTA MAQILPIRFQEHLQ|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 10952 CRIM1::FEZ2 ENSG00000150938.10::ENSG00000171055.15 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36442735:+ chr2:36582921-36778278:+ chr2:36669878:+ FEZ2 ENSG00000171055.15 protein_coding - + chr2:36531805-36646087:- chr2:36617452:+ chr2:36758948-36873230:- chr2:36844595:+ chr2:36458727 chr2:36608245 NA NA chr2:36685870 chr2:36835388 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Insulin-like_growth_factor_binding_protein(100%)| IGFBP(100%)| 8 7 9 631 34 ENST00000280527.7 unknown downstream upstream duplicates(1) CCTGGGGAGTGCTGTCCCTTACCCAGCCGCTGCGTGTGCAACCCCGCAGGCTGTCTGCGCAAAGTCTGCCAGCCGGGAAACCTGAACATACTAGTGTCAAAAGCCTCAGGGAAGCCGGGAGAGTGCTGTGACCTCTATGAGTGCAAACCAG___TTTTCGGCGTGGACTGCAGGACTGTGGAATGCCCTCCTGTTCAGCAGACCGCGTGTCCCCCGGACAGCTATGAAACTCAAGTCAGACTAACTGCAGATGGTTGCTGTACTTTGCCAACAAG|ATTCCACCAAATTACATAAGCTTCAGCCTCCACAAACTCTGAATCTGACCCTCATCAAGTGGGCTGTGCTAAGAAGCTGGGTGGAATGAGCTTGGCCTGGCCTGCCACCTATCATTATTTCCAA PGECCPLPSRCVCNPAGCLRKVCQPGNLNILVSKASGKPGECCDLYECKPVFGVDCRTVECPPVQQTACPPDSYETQVRLTADGCCTLPTr|fhqit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10963 RC3H1::RABGAP1L-DT ENSG00000135870.12::ENSG00000227373.6 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RC3H1 ENSG00000135870.12 protein_coding - - chr1:173931084-174022357:- chr1:174022096:- chr1:173900222-173991495:- chr1:173991234:- RABGAP1L-DT ENSG00000227373.6 lncRNA - - chr1:174110268-174160165:- chr1:174115649:- chr1:174079406-174129303:- chr1:174084787:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 1 18 1 ENST00000367696.7 ENST00000665650.1 upstream downstream none GCCTCAGCAGCAGCAGGTGGGAGGCCGGAGGCGGTGCTGGCGGTGGCGGCGGCAGCCGTGGCCCGGCGGCCTGGGACAGAATCAGAGTCAACGGTGGCCTC...CTCGGAGCTGAGAGGAGCTGCTGCTCGGACCAGCGCG|ATGCAGTGACTCATGCCTATAATCCCAGTACTTTGGAAGGTCAAGGCACAAGGATCCATTGAGGCCAGGAGTCCAAGACCAGCCTGCACAATGTAGCAAGACTCCTTCTCTACAAAAAAATAAATAAAAATTAGCCAGGCATGGTGGTGCACTCCTGTAGTCCCAGCTACTCAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10964 SOX5::DNAI7 ENSG00000134532.20::ENSG00000118307.20 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1936 TRUE 748 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24562333:- chr12:23682438-24715478:- chr12:24715267:- DNAI7 ENSG00000118307.20 protein_coding - - chr12:25108289-25195162:- chr12:25161197:- chr12:25261223-25348096:- chr12:25314131:- chr12:24539338,chr12:24539342 chr12:25170125,chr12:25170126 NA NA chr12:24692272,chr12:24692276 chr12:25323059,chr12:25323060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cancer_susceptibility_candidate_1_N-terminus(100%) |Casc1_C(100%),Casc1_N(100%) 0 0 3 24 5 ENST00000456299.2 ENST00000395987.8 upstream downstream mismappers(1) AGCAAAGGGATTTCACCTCGTCCTTGAGAGCAACACGGGGAGCGCGAGCGAGCGGGCGAGCGAGAGACGGGGGGAGAGAGAGGGACACGCGCGCGCACACA...CACGCACACACACAGACACACACACACAGAGTGAAAAAGGCGAGCCACCAAAACCCATCTCCAGTCTCCTCCCGGGGGCCCCCAGCCCGCCTCTGTGCCACTTTGCATCCCACGCCGGAGGAGGCATTAACGAGACCGGGTAAG|TCTGGCAGTAAGAAAAAGAAAGTCACCAAAGCTGAACGATTGAAGCTGCTACAAGAGGAGGAGGAGAGACGACTGAAAGAGGAAG___AGGAAGCCCGTTTGAAATATGAGAAAGAAGAAATGGAAAGGCTTGAAATACAGCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10965 SOX5::DNAI7 ENSG00000134532.20::ENSG00000118307.20 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1936 TRUE 748 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24562333:- chr12:23682438-24715478:- chr12:24715267:- DNAI7 ENSG00000118307.20 protein_coding - - chr12:25108289-25195162:- chr12:25158563:- chr12:25261223-25348096:- chr12:25311497:- chr12:24539338,chr12:24539342 chr12:25170125,chr12:25170126 NA NA chr12:24692272,chr12:24692276 chr12:25323059,chr12:25323060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cancer_susceptibility_candidate_1_N-terminus(97%) |Casc1_C(100%),Casc1_N(93%) 0 1 1 24 14 ENST00000446891.7 ENST00000395987.8 upstream downstream none CACGCACACACACAGACACACACACACAGAGTGAAAAAGGCGAGCCACCAAAACCCATCTCCAGTCTCCTCCCGGGGGCCCCCAGCCCGCCTCTGTGCCACTTTGCATCCCACGCCGGAGGAGGCATTAACGAGACCGGGTAAG|AGGAAGCCCGTTTGAAATATGAGAAAGAAGAAATGGAAAGGCTTGAAATACAGCGAATTGAGAAAGAAAAATGGCATCGACTTGAAGCAAAA___GATCTAGAAAGGAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10970 SPATA6::AGBL4 ENSG00000132122.12::ENSG00000186094.18 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1937 TRUE 749 SPATA6 ENSG00000132122.12 protein_coding - - chr1:48295373-48472208:- chr1:48359586:- chr1:48761045-48937880:- chr1:48825258:- AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:48663241:- chr1:48998526-50489626:- chr1:49128913:- chr1:48356670,chr1:48356682 chr1:48695876,chr1:48695879 NA NA chr1:48822342,chr1:48822354 chr1:49161548,chr1:49161551 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Spermatogenesis-assoc_protein_6(100%)|Zinc_carboxypeptidase(80%) SPATA6(100%)|Peptidase_M14(15%) 1 0 1 31 3 ENST00000396199.7 ENST00000371839.6 upstream downstream none ATTTGAGCCCAAGGTCGTGTAGTAAGCCCCGGCATTCAGCGAGGACCTTGCTAGTCCATTCAGCACCCTCAACAATGCCAAAGCATTCTCCAAGCCCTGTGTTAAATAGAGCTTCTCTCAGGGAAAG|ACAATCTCCGGGAAGGGGCAGAGCAGAAGGTGGTATTCATCACAGGACGAGTCCACCCAGGGGAAACACCC LSPRSCSKPRHSARTLLVHSAPSTMPKHSPSPVLNRASLREr|qspgrgraeggihhrtspprgnt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10971 SPATA6::AGBL4 ENSG00000132122.12::ENSG00000186094.18 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1937 TRUE 749 SPATA6 ENSG00000132122.12 protein_coding - - chr1:48295373-48472208:- chr1:48385309:- chr1:48761045-48937880:- chr1:48850981:- AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:48663241:- chr1:48998526-50489626:- chr1:49128913:- chr1:48356670,chr1:48356682 chr1:48695876,chr1:48695879 NA NA chr1:48822342,chr1:48822354 chr1:49161548,chr1:49161551 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Spermatogenesis-assoc_protein_6(100%)|Zinc_carboxypeptidase(80%) SPATA6(100%)|Peptidase_M14(15%) 1 0 0 42 3 ENST00000371847.8 ENST00000371839.6 upstream downstream none CAGCAGTGTTCGAGTTGATACAGCTAGTTCCACCAG___TGGGTGAAACACTGTCTACGTATGACGAAAATACACGAGATTTCATGTTTCCGGGTCCAAACCAA...GATCATTCTCATCTTGGCTGCTGCCGACCCAAGGATTATAAG|ACAATCTCCGGGAAGGGGCAGAGCAGAAGGTGGTATTCATCACAGGACGAGTCCACCCA DHSHLGCCRPKDYK|tisgkgqsrrwyssqdest NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10973 EEF2K::POLR3E ENSG00000103319.12::ENSG00000058600.16 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1938 TRUE 750 EEF2K ENSG00000103319.12 protein_coding + + chr16:22206278-22288738:+ chr16:22225975:+ chr16:22217599-22300059:+ chr16:22237296:+ POLR3E ENSG00000058600.16 protein_coding + + chr16:22297375-22335101:+ chr16:22302931:+ chr16:22308696-22346422:+ chr16:22314252:+ chr16:22241380,chr16:22241375 chr16:22297147,chr16:22297139 NA NA chr16:22252701,chr16:22252696 chr16:22308468,chr16:22308460 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |RPC5_protein(100%) |RPC5(85%),RPC5_C(100%) 0 6 0 54 136 ENST00000263026.10 ENST00000299853.10 downstream upstream none CAACCTAACAAAAAGTGAGCGGTATAGCTCCAGCGGGTCCCCGGCAAACTCCTTCCACTTCAAG|ATCGAGCTGAAGGACTGCGCGGCTGGCTCTCCTCTAGTATGGCCAATGAAGAGGATGACCCAGTTGTACAGGAG___ATCGATGTGTACTTGGCCAAGAGTCTGGCGGAAAAGCTGTATCTATTTCAG___TACCCTGTGCGTCCAGCCTCGATGACCTACGATGACATTCCGCACCTCTCAGCCAAGATCAAGCCCAAGCAGCAGAAG___GTAGAGCTTGAGATGGCCATCGACACCCTGAACCCCAACTATTGCC...GGGaACTCTTCACgGGATGAGGCGaAAGACGATGTTAAGCAGATCAgG___GTGCGGTTCTCCCGGCCGGAGTCAGAGCAGGCCCGCCAGCGCCGTGTGCA NLTKSERYSSSGSPANSFHFK|ielkdcaagsplvwpmkrmtqlyrrsmctwprvwrksciyfstlcvqpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Eukaryotic elongation factor 2 kinase Atypical Alpha eEF2K O00418 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10974 EEF2K::POLR3E ENSG00000103319.12::ENSG00000058600.16 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1938 TRUE 750 EEF2K ENSG00000103319.12 protein_coding + + chr16:22206278-22288738:+ chr16:22206679:+ chr16:22217599-22300059:+ chr16:22218000:+ POLR3E ENSG00000058600.16 protein_coding + + chr16:22297375-22335101:+ chr16:22302931:+ chr16:22308696-22346422:+ chr16:22314252:+ chr16:22241380,chr16:22241375 chr16:22297147,chr16:22297139 NA NA chr16:22252701,chr16:22252696 chr16:22308468,chr16:22308460 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through low none |RPC5_protein(100%) |RPC5(85%),RPC5_C(100%) 1 1 0 31 136 ENST00000263026.10 ENST00000299853.10 downstream upstream none GCCCGGAGCGCCAGCTAGCGCTCCCCGCTCTCCGCTCCCCGGCACTCTCGGGGGGCCCGCCCGCCCTGCACCCTGGAGCTCCGGGCCGCGAGCCTCTGCCA...CTCCTtTGGACCCTCGCGGCCGTGGGCAGCGGCTGCCGCGCCTGTCTGCCCGAGGGAG|ATCGAGCTGAAGGACTGCGCGGCTGGCTCTCCTCTAGTATGGCCAATGAAGAGGATGACCCAGTTGTACAGGAG___ATCGATGTGTACTTGGCCAAGAGTCTGGCGGAAAAGCTGTATCTATTTCAG___TACCCTGTGCGTCCAGCCTCGATGACCTACGATGACATTCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Eukaryotic elongation factor 2 kinase Atypical Alpha eEF2K O00418 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10977 BAG4::DDHD2 ENSG00000156735.11::ENSG00000085788.14 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1939 TRUE 751 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38192795:+ chr8:38034051-38070819:+ chr8:38050313:+ DDHD2 ENSG00000085788.14 protein_coding + + chr8:38225218-38275558:+ chr8:38247713:+ chr8:38082736-38133076:+ chr8:38105231:+ chr8:38199486 chr8:38246009 NA NA chr8:38057004 chr8:38103527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |DDHD_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) |DDHD(100%),PAP2(100%),SAM_1(100%),SAM_2(100%) 2 2 2 95 202 ENST00000287322.5 ENST00000397166.7 downstream upstream none GCCGCTACTACGGGCCTGGGGGTGGAGATGTGCCGGTACACCCACCTCCACCCTTATATCCTCTTCGCCCTGAACCTCCCCAGCCTCCCATTTCCTGGCGG...GGGGCGGCCCGGCGGAGACCACCTGGCTGGGAGAAGGCGGAGGAGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG___GAGCAGCCACCATATCCTAGCTACAATTCTAACTATTGGAATTCTACT...CGAGATCTAGGGCTCCTTACCCAAGTACATATCCTGTAAGACCAGAATTGCAAGGCCAG|GATTCGCTAAATATTGTAATGGATCAAGGAGATACACCTACACTAGAGGAAGATTTGAAGAAACTTCAGCTCTCTGAATTCTTTGATATCTTTGAGAAGGAGAAAGTAGATAAGGAAGCTCTG___GCTTTATGTACAGACCGAG RSRAPYPSTYPVRPELQGQ|DSLNIVMDQGDTPTLEEDLKKLQLSEFFDIFEKEKVDKEALALCTDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10978 BAG4::DDHD2 ENSG00000156735.11::ENSG00000085788.14 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1939 TRUE 751 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38177139:+ chr8:38034051-38070819:+ chr8:38034657:+ DDHD2 ENSG00000085788.14 protein_coding + + chr8:38225218-38275558:+ chr8:38247713:+ chr8:38082736-38133076:+ chr8:38105231:+ chr8:38199486 chr8:38246009 NA NA chr8:38057004 chr8:38103527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |DDHD_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) |DDHD(100%),PAP2(100%),SAM_1(100%),SAM_2(100%) 1 1 1 68 202 ENST00000287322.5 ENST00000397166.7 downstream upstream none GTCGGCCCTGAGGCGCTCGGGCTACGGCCCCAGTGACGGTCCGTCCTACGGCCGCTACTACGGGCCTGGGGGTGGAGATGTGCCGGTACACCCACCTCCAC...AGCCTCCCATTTCCTGGCGGGTGCGCGGGGGCGGCCCGGCGGAGACCACCTGGCTGGGAGAAGGCGGAGGAGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG|GATTCGCTAAATATTGTAATGGATCAAGGAGATACACCTACACTAGAGGAAGATTTGAAGAAACTTCAGCTCTCTGAATTCTTTGATATCTTTGAGAAGGAGAA PPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQ|DSLNIVMDQGDTPTLEEDLKKLQLSEFFDIFEKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10979 BAG4::DDHD2 ENSG00000156735.11::ENSG00000085788.14 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA TRUE 1939 TRUE 751 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38192795:+ chr8:38034051-38070819:+ chr8:38050313:+ DDHD2 ENSG00000085788.14 protein_coding + + chr8:38225218-38275558:+ chr8:38249708:+ chr8:38082736-38133076:+ chr8:38107226:+ chr8:38199486 chr8:38246009 NA NA chr8:38057004 chr8:38103527 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |DDHD_domain(100%),SAM_domain_(Sterile_alpha_motif)(51%) |DDHD(100%),PAP2(100%),SAM_1(3%),SAM_2(3%) 1 0 2 95 194 ENST00000287322.5 ENST00000397166.7 downstream upstream none ATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG___GAGCAGCCACCATATCCTAGCTACAATTCTAACTATTGGAATTCTACTGCGAGATCTAGGGCTCCTTACCCAAGTACATATCCTGTAAGACCAGAATTGCAAGGCCAG|GCTTTATGTACAGACCGAGATCTTCAGGAAATAGGAATTCCTTTAGGACCAAGAAAGAAGATATTAAACTAT...ACCAGAAAAAACTCAATG___GGTATTAAGAGACCAGCCCCGCAGCCTGCTTCAGGGGCAAACATCCCCAAAGAATCTGAGTTCTGCAGTAGCAGTAATACTAG PSGGAWPEPGRAGGSHQEQPPYPSYNSNYWNSTARSRAPYPSTYPVRPELQGQ|ALCTDRDLQEIGIPLGPRKKILN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10987 DNM1L::FGD4 ENSG00000087470.21::ENSG00000139132.16 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNM1L ENSG00000087470.21 protein_coding + + chr12:32679200-32745650:+ chr12:32701562:+ chr12:32832134-32898584:+ chr12:32854496:+ FGD4 ENSG00000139132.16 protein_coding + + chr12:32399558-32646050:+ chr12:32607957:+ chr12:32552492-32798984:+ chr12:32760891:+ chr12:32702752,chr12:32702750 chr12:32605169,chr12:32605164 NA NA chr12:32855686,chr12:32855684 chr12:32758103,chr12:32758098 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Dynamin_family(25%)|FYVE_zinc_finger(100%),PH_domain(100%),RhoGEF_domain(32%) Dynamin_N(53%),MMR_HSR1(65%)|FYVE(100%),IQ_SEC7_PH(100%),PH(100%),RhoGEF(23%) 2 1 0 464 12 ENST00000452533.6 ENST00000534526.7 downstream upstream none GGAGGGACCTGCTTCCCAGAGGTACTGGAATTGTCACCCGGAGACCTCTCATTCTGCAACTGGTCCATGTTTCACAAGAAGATAAACGGAAAACAACAGGAGAAGAAAATG|AAACAGAAAATCTGTGGGAGCTTAACTTTGCAGCATCACATGCTAGAACCTGTTCAGCGGATTCCCCGGTATGAGA...AATCACTaGAAATTcTATCacCAGCAGCAAGCCATTCTAATAGTGCAATAAGGAAAATG___GAGAACCTAAAGAAACTCTTAGAGATTTA RDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEEN|etenlwelnfaashartcsadspv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 10995 PDSS1::ABI1 ENSG00000148459.16::ENSG00000136754.18 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PDSS1 ENSG00000148459.16 protein_coding + + chr10:26697701-26746798:+ chr10:26709768:+ chr10:26986630-27035727:+ chr10:26998697:+ ABI1 ENSG00000136754.18 protein_coding - - chr10:26746593-26861087:- chr10:26759235:- chr10:27035522-27150016:- chr10:27048164:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Polyprenyl_synthetase(14%)|SH3_domain(100%) polyprenyl_synt(0%)|SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 0 1 95 280 ENST00000376215.10 ENST00000376166.5 downstream downstream none CTTGAAAGGTCTGTATGAGGACATTAGAAAG___GAACTGCTTATATCAACATCAGAACTTAAGGAAATGTCTGAGTACTACTTTGATGGGAAAGGGAAAGCCTTTCGACCAATTATTGTGGCGCTAATGGCCCGAGCATGCAATATTCATCATAACAACTCCCG|CCCCGGGCTCAGCTCCTGGTTCCCAGTATGGCACAATGACCAGGCAGATATCTCGACACAACTCTACTACTTCTTCGACATCTTCTGGTGGATACAGACGAACTCCCTCTGTGACTGCTCAATTTTCT LKGLYEDIRKELLISTSELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSr|pglsswfpvwhndqadistqlyyffdifwwiqtnslcdcsif NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE abl-interactor 1 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 11009 DLEU2::RB1 ENSG00000231607.15::ENSG00000139687.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1091 FALSE NA FALSE NA DLEU2 ENSG00000231607.15 lncRNA - - chr13:49956670-50125720:- chr13:50125302:- chr13:50530806-50699856:- chr13:50699438:- RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48452993:+ chr13:48877880-49173572:+ chr13:49027129:+ chr13:50095200,chr13:50095203 chr13:48433192,chr13:48433189 NA NA chr13:50669336,chr13:50669339 chr13:49007328,chr13:49007325 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Rb_C-terminal_domain(100%),Retinoblastoma-associated_protein_A_domain(3%),Retinoblastoma-associated_protein_B_domain(100%) |BACK(100%),BTB(100%),RB_A(0%),RB_B(100%),RCC1(100%),RCC1_2(100%),Rb_C(100%) 55 172 190 379 721 ENST00000621282.4 ENST00000267163.6 upstream upstream duplicates(118),mismatches(28) GCGGCGCGGGCCCCGCCGAGGGGGGACACCTGGCTGAGGCACAGCTGCCGCCGTGCCTTTCCGCGCGAGCCCAGAGCTCCGATCCCTGCGCGGGCTCGAGAGCTCGCCCCGAACGGGGGTCTTCCTCCTCCGCCGTTGACAG|GATTCACCTTTATTTGATCTTATTAAACAATCAAAGGACCGAGAAGGACCAACTGATCACCTTGAATCTGCTTGTCCTCTTAATCTTCCTCTCCAGAATAATCACACTGCAGCAGATAT___GTATCTTTCTCCTGTAAGATCTCCAAAGAAAAAAGGTTCAACTACGCGTGTAAATTCTACTGCAAATGCAGAGACACAAGCAACCTCAGCCTTCCAGACCCAGAAGCCATTGAAATCTACCTCTCTTTCACTGTTTTATAAAAAAG___TGTATCGGCTAGCCTATCTCCGGCTAAATACACTTTGTGAACGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 11010 RB1::DLEU2 ENSG00000139687.16::ENSG00000231607.15 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1945 TRUE 752 RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48433190:+ chr13:48877880-49173572:+ chr13:49007326:+ DLEU2 ENSG00000231607.15 lncRNA - - chr13:49956670-50125720:- chr13:50095198:- chr13:50530806-50699856:- chr13:50669334:- chr13:48433191,chr13:48433192 chr13:50095200,chr13:50095199 NA NA chr13:49007327,chr13:49007328 chr13:50669336,chr13:50669335 NA NA sense sense unknown intron intron inversion medium none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(96%)| 7tm_1(100%),DUF3452(100%),RB_A(76%)| 4 2 5 7 9 unknown unknown downstream downstream duplicates(5),mismatches(1) TTTCCAGATTTAATTTCAGTCTTTGCTATTATGCTTATATAGTTGAAATCAGAGAATAATATCTTTAAGATTTGGAATGGGATACTGCTCTTTCTTTTTATGTGCTCTTAGATAAGAACTCTTTCTACTGTGTCTTATAAACTCTGTCATACCATAAGTTTCTCAAAGTGATTTTAACCACTGTACATTTTAAACAATATGAGAAATAAATTAATTTCTGATATGAACATACATGTAAGCTACTAAACCTCAGTATTATGAAATATCTAAAACGTGACTTAT|GACCAAGTTTTTAAGGCAATTGTTCACTCCTCTCTGCTACTAACCATACTTTTGTGGAAAAGTTTGAGGTAGAGTGACTTTGATGACTATTCAAGATTGGTATATTAATACCTCTACTAGTTACAAAGATGAATGGTGGTGATGGTTACAACATAATGGATGTATTTAATACCACTGAACTGTACACTTAAAAATGGTTAAGTTGATAAACTTCATGAGTATTTTGCCA...TACTAAAGTTCAGTATTATCAACAAATATAGACTATTGTAAGAGTTTTTTATTTAATTTGAATATGCATTTCTGAATTGACTACTATATCCTGTATTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3613,hsa-mir-16-1,hsa-mir-15a chr13:49996415-49996501:-,chr13:50048973-50049061:-,chr13:50049119-50049201:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 11011 RB1::DLEU2 ENSG00000139687.16::ENSG00000231607.15 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1945 TRUE 752 RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48381443:+ chr13:48877880-49173572:+ chr13:48955579:+ DLEU2 ENSG00000231607.15 lncRNA - - chr13:49956670-50125720:- chr13:50075653:- chr13:50530806-50699856:- chr13:50649789:- chr13:48433191,chr13:48433192 chr13:50095200,chr13:50095199 NA NA chr13:49007327,chr13:49007328 chr13:50669336,chr13:50669335 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion medium none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(96%)| DUF3452(100%),RB_A(15%)| 0 1 1 82 133 ENST00000643064.1 ENST00000425586.5 downstream downstream duplicates(1) GCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCA|GTTTTGACCTGTAGCAGAGAACCAATTCTGGAGAACAGCCTCACTTCTTTGATTGAATACTTACATAATGCATTGGAACATGACATGAGATTAAG___GTTTAATAATGATAGAATGAAGACCACAATAAAAGAGACCTCTACTTAGCTCAGCAATTCTTACCTT___TCTTACCTATTTGATGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3613,hsa-mir-16-1,hsa-mir-15a chr13:49996415-49996501:-,chr13:50048973-50049061:-,chr13:50049119-50049201:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 11012 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1092 TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50083194:+ chr13:50656305-51480992:+ chr13:50657330:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48422790:- chr13:48963703-49018840:- chr13:48996926:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%),RB_A(64%) 14 27 45 97 148 ENST00000467721.5 ENST00000465365.6 downstream downstream duplicates(21),inconsistently_clipped(2),mismappers(16),mismatches(5) AGTGAACTTAGAGGTTGTGGGGCCGAGGGGTCGTCTTATAGCTACCAGCCCACAGGCATTTAGTCTACGTTGGAGGTAAACAAATACGGGTCCTGCTTAGGAGAAAAGAAAAACGTCTTACAGCCAGTGTCTAAACTCCAAACAACGGAATGTATCAATGAGACCTTGTATATGGATACACGTGCATTTAAAACCGCCCTGCCGGCTTGTAGAGCTTTTGCCGTTCTCCAGCGCTTTACAGGGGTTATCGCACTTAAGCCTCGGAACAACTTTACCAG___ATGAGGACACCTGAGGTTCAGATTAAGAAATCTGCCCCAAAGTCTTAGAACTG|ACAAGGTCTTGATCTGTCACCAGGCTGAAGTGCAGTGGTACAATCAAAGCTCACTGCAGTCTCAACCTCCTAGGCTCAAACAATCCTCCCACTTCAGCCTCCCAACCAGCTGGGACCACAGGTTGACATCACCACACCCAG___GTCTGCTGGAATTTGCTGGAGGTCCACTCCAGACCCTGTTTGTCTGGATATCACCAGCAGAGGTTGCAGAACAACAAAGATTGCTGCCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11013 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1093 TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50082557:+ chr13:50656305-51480992:+ chr13:50656693:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48422790:- chr13:48963703-49018840:- chr13:48996926:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%),RB_A(64%) 3 15 36 194 148 ENST00000467721.5 ENST00000465365.6 downstream downstream duplicates(10),mismappers(6),mismatches(6) CCGCGGAGGTGAAGTGAACTTAGAGGTTGTGGGGCCGAGGGGTCGTCTTATAGCTACCAGCCCACAGGCATTTAGTCTACGTTGGAGGTAAACAAATACGGGTCCTGCTTAGGAGAAAAGAAAAACGTCTTACAGCCAGTGTCTAAACTCCAAACAACGGAATGTATCAATGAGACCTTGTATATGGATACACGTGCATTTAAAACCGCCCTGCCGGCTTGTAGAGCTTTTGCCGTTCTCCAGCGCTTTACAGGGGTTATCGCACTTAAGCCTCGGAACAACTTTACCAG|ACAAGGTCTTGATCTGTCACCAGGCTGAAGTGCAGTGGTACAATCAAAGCTCACTGCAGTCTCAACCTCCTAGGCTCAAACAATCCTCCCACTTCAGCCTCCCAACCAGCTGGGACCACAGGTTGACATCACCACACCCAG___GTCTGCTGGAATTTGCTGGAGGTCCACTCCAGACCCTGTTTGTCTGGATATCACCAGCAGAGGTTGCAGAACAACAAAGATTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11014 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50083194:+ chr13:50656305-51480992:+ chr13:50657330:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48424119:- chr13:48963703-49018840:- chr13:48998255:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%),RB_A(65%) 2 1 47 97 16 ENST00000467721.5 ENST00000465365.6 downstream downstream duplicates(14),mismappers(8),mismatches(3) AAGAAAAACGTCTTACAGCCAGTGTCTAAACTCCAAACAACGGAATGTATCAATGAGACCTTGTATATGGATACACGTGCATTTAAAACCGCCCTGCCGGCTTGTAGAGCTTTTGCCGTTCTCCAGCGCTTTACAGGGGTTATCGCACTTAAGCCTCGGAACAACTTTACCAG___ATGAGGACACCTGAGGTTCAGATTAAGAAATCTGCCCCAAAGTCTTAGAACTG|AAAATTTTATCATAATGAGCATCAAAAGAATCCCAAATGAGAAAACTGCTTTTTGCATAAGTGTAAATTAAGAGATGGAAGTCACATTTCACCATGGCAAACATTTGCTGCATGCAAAATGACTGAA___ACAAGGTCTTGATCTGTCACCAGGCTGAAGTGCAGTGGTACAATCAAAGCTCACTGCAGTCTCAACCTCCTAGGCTCAAACAATCCTCCCACTTCAGCCTCCCAACCAGCTGGGACCACAGGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11015 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50083194:+ chr13:50656305-51480992:+ chr13:50657330:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48417320:- chr13:48963703-49018840:- chr13:48991456:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |7_transmembrane_receptor_(rhodopsin_family)(100%) |7tm_1(100%),RB_A(57%) 0 1 16 97 156 ENST00000467721.5 ENST00000465365.6 downstream downstream duplicates(5),mismappers(1) CCGGCTTGTAGAGCTTTTGCCGTTCTCCAGCGCTTTACAGGGGTTATCGCACTTAAGCCTCGGAACAACTTTACCAG___ATGAGGACACCTGAGGTTCAGATTAAGAAATCTGCCCCAAAGTCTTAGAACTG|GTCTGCTGGAATTTGCTGGAGGTCCACTCCAGACCCTGTTTGTCTGGATATCACCAGCAGAGGTTGCAGAACAACAAAGATTGCTGCCTGTTCCTTCCTCTGGAAGCTTTGTCCCAGAGGGGCACCCACCAGACGGCAGCTGGAGCTCTCCTGT___TCCCTCTGCTATGGCTCTTCCTCAGTAGAAACAACTGGCAACAAAATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11016 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50083194:+ chr13:50656305-51480992:+ chr13:50657330:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48389812:- chr13:48963703-49018840:- chr13:48963948:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none |RB_A(25%) 1 0 0 97 30 ENST00000659280.2 ENST00000465365.6 downstream downstream none CACATCTGTCAGATTCAGCAGCCCTGGAGTTCTCTACCACGCTGTACGATTCAACCTGAGCCCACACAGGAGGCGTGGTCTCCTTCTTCAACGaTG...CCCCAAAGTCTTAGAACTG|GTGAAAACTCCAAAGCTTAACATTCTAACCACTCTAGGGAGGGAGGATGGGAGGAAGAGAGCTGAGTGTGCACCAAGGgGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11017 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 1094 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118484975:+ chr11:118307171-118397547:+ chr11:118355690:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118488422,chr11:118488593,chr11:118488415 chr9:20377773,chr9:20377776,chr9:20377780 NA NA chr11:118359137,chr11:118359308,chr11:118359130 chr9:20377771,chr9:20377774,chr9:20377778 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman CXXC_zinc_finger_domain(100%)|ANC1_homology_domain_(AHD)(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AHD(100%) 6 4 21 75 53 ENST00000710560.1 ENST00000380338.9 downstream downstream duplicates(10),mismatches(2) GAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG___GAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTtTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAG___GAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAG|TCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAG___GTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACAATGACTCTGAAATGGAGAGGCCTGTAAATAGAGGAGGCAGCCGAAGTCGCAG___AGTTAGCTTAAGTGATGG KKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTfSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVE|SEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 11018 DLEU1::RB1 ENSG00000176124.15::ENSG00000139687.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DLEU1 ENSG00000176124.15 lncRNA + - chr13:50082169-50906856:+ chr13:50117146:- chr13:50656305-51480992:+ chr13:50691282:- RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48452992:+ chr13:48877880-49173572:+ chr13:49027128:+ chr13:50095200,chr13:50095203 chr13:48433192,chr13:48433189 NA NA chr13:50669336,chr13:50669339 chr13:49007328,chr13:49007325 NA NA antisense sense unknown intron intron inversion/3'-3' high none |Rb_C-terminal_domain(100%),Retinoblastoma-associated_protein_A_domain(3%),Retinoblastoma-associated_protein_B_domain(100%) |BACK(100%),BTB(100%),RB_A(0%),RB_B(100%),RCC1(100%),RCC1_2(100%),Rb_C(100%) 0 4 9 5 721 unknown ENST00000267163.6 upstream upstream duplicates(2),mismappers(4),mismatches(1) CCCAAGTAGCTGGGACTgCAGGCGCCCGTCACCAAGCCCAGCTAATTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCGCTGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGACCCACCGCGCCCAGCCGAGAACATCACAGTACTTTTAAATT|GGATTCACCTTTATTTGATCTTATTAAACAATCAAAGGACCGAGAAGGACCAACTGATCACCTTGAATCTGCTTGTCCTCTTAATCTTCCTCTCCAGAATAATCACACTGCAGCAGATAT___GTATCTTTCTCCTGTAAGATCTCCAAAGAAAAAAGGTTCAACTACG...CTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGAGTATGAACTCATGAGAGACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 11034 WDR36::NREP-AS1 ENSG00000134987.13::ENSG00000250095.5 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1948 TRUE 754 WDR36 ENSG00000134987.13 protein_coding + + chr5:111092321-111130502:+ chr5:111102400:+ chr5:110428019-110466200:+ chr5:110438099:+ NREP-AS1 ENSG00000250095.5 lncRNA + + chr5:111912508-112017309:+ chr5:111925210:+ chr5:111248205-111353006:+ chr5:111260907:+ chr5:111102619,chr5:111102620 chr5:111925210,chr5:111925208 NA NA chr5:110438318,chr5:110438319 chr5:111260907,chr5:111260905 NA NA sense sense out-of-frame intron intron deletion high none WD_domain__G-beta_repeat(47%)| WD40(7%)| 18 27 61 281 45 ENST00000513710.4 unknown downstream upstream duplicates(9),low_entropy(3) CCTGCAGTTGACTTTTGATAAATCAGTATTTAAAATTTCTGCAATTTTGCATCCAAGTACCTACTTGAATAAAATACTTCTGGGCAGTGAACAAGGAAGCCTGCAGTTGTGGAATGTAAAATCCAA___TAAACTTCTATATACATTTCCAGGATGGAAAGTTGGAGTGACAGCTCTTCAGCAGG|AGCCCTGGGACCCATCAGTTCTGCTGGAGCATTTGGGAGACCAGTTCTGGACGGAGATGTCTCTCCGTCTCTGCAGGCAGTCCGACCTCTAGTTGTCCTTGCCACAGGCTGGACAGGGTCGAGGTGGCTTCTTACTGCCAGGACAGTCCTTCTTAAAGTGCCCTGGTTTGCCACATGGATAGCAATTAGTGGATCCTGTACTTTACAGACCTCTAAAGCAGCCATCAGAGATTCCATCCTTCTCCTGTGCTTCCTCTCTTTTTCCTGGGCCTCCTCCtGATCCCTGCTGTAAAAGACCG LQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQ|epwdpsvllehlgdqfwtemslrlcrqsdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11035 WDR36::NREP-AS1 ENSG00000134987.13::ENSG00000250095.5 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1948 TRUE 754 WDR36 ENSG00000134987.13 protein_coding + + chr5:111092321-111130502:+ chr5:111102399:+ chr5:110428019-110466200:+ chr5:110438098:+ NREP-AS1 ENSG00000250095.5 lncRNA + + chr5:111912508-112017309:+ chr5:111940037:+ chr5:111248205-111353006:+ chr5:111275734:+ chr5:111102619,chr5:111102620 chr5:111925210,chr5:111925208 NA NA chr5:110438318,chr5:110438319 chr5:111260907,chr5:111260905 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none WD_domain__G-beta_repeat(47%)| WD40(7%)| 14 13 14 281 42 ENST00000513710.4 ENST00000508389.1 downstream upstream duplicates(6),low_entropy(2),mismatches(1) TTTGGCACATATATTCAGAAG___AAGAATACCTGCAGTTGACTTTTGATAAATCAGTATTTAAAATTTCTGCAATTTTGCATCCAAGTACCTACTTGAATAAAATACTTCTGGGCAGTGAACAAGGAAGCCTGCAGTTGTGGAATGTAAAATCCAA___TAAACTTCTATATACATTTCCAGGATGGAAAGTTGGAGTGACAGCTCTTCAGCAG|ATTTACAGTGAAGAAGAAGAATCAAGTGTACATCCCAATCTGAAcTACTGCATTCAAAGAAAAATTACCACTGCTAGCCACTCTACAAGAATAGCACA___AGAACAAGAAAGTCACCTAACTTGAAGACTTGGTGACCAAAACTCATCCAGCAAAGATAAATAACAAAGAACAATATTGCTGATTAATC WHIYSEEEYLQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQ|iyseeeessvhpnlnyciqrkittashstriaqeqeshlt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11036 WDR36::NREP-AS1 ENSG00000134987.13::ENSG00000250095.5 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1948 TRUE 754 WDR36 ENSG00000134987.13 protein_coding + + chr5:111092321-111130502:+ chr5:111100721:+ chr5:110428019-110466200:+ chr5:110436420:+ NREP-AS1 ENSG00000250095.5 lncRNA + + chr5:111912508-112017309:+ chr5:111940037:+ chr5:111248205-111353006:+ chr5:111275734:+ chr5:111102619,chr5:111102620 chr5:111925210,chr5:111925208 NA NA chr5:110438318,chr5:110438319 chr5:111260907,chr5:111260905 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none WD_domain__G-beta_repeat(47%)| WD40(7%)| 0 0 0 275 42 ENST00000513710.4 ENST00000507222.5 downstream upstream mismatches(1) CTGCAGTTGACTTTTGATgAATCAGTATTTAAAATTTCTGCAATTTTGCATCCAAGTACCTACTTGAATAAAATACTTCTGGGCAGTGAACAAGGAAGCCTGCAGTTGcGGAATtTAAAATCCAA|ATTTACAGTGAAGAAGAAGAA LQLTFDeSVFKISAILHPSTYLNKILLGSEQGSLQLrNlKSk|ftvkkk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11037 WDR36::NREP ENSG00000134987.13::ENSG00000134986.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDR36 ENSG00000134987.13 protein_coding + + chr5:111092321-111130502:+ chr5:111102400:+ chr5:110428019-110466200:+ chr5:110438099:+ NREP ENSG00000134986.14 protein_coding - + chr5:111662621-111997464:- chr5:111925210:+ chr5:110998318-111333161:- chr5:111260907:+ chr5:111102619,chr5:111102620 chr5:111925210,chr5:111925208 NA NA chr5:110438318,chr5:110438319 chr5:111260907,chr5:111260905 NA NA sense antisense out-of-frame intron intron deletion/5'-5' high none WD_domain__G-beta_repeat(47%)| WD40(7%)| 18 27 47 281 45 ENST00000513710.4 unknown downstream upstream duplicates(8),low_entropy(3) CCTGCAGTTGACTTTTGATAAATCAGTATTTAAAATTTCTGCAATTTTGCATCCAAGTACCTACTTGAATAAAATACTTCTGGGCAGTGAACAAGGAAGCCTGCAGTTGTGGAATGTAAAATCCAA___TAAACTTCTATATACATTTCCAGGATGGAAAGTTGGAGTGACAGCTCTTCAGCAGG|AGCCCTGGGACCCATCAGTTCTGCTGGAGCATTTGGGAGACCAGTTCTGGACGGAGATGTCTCTCCGTCTCTGCAGGCAGTCCGACCTCTAGTTGTCCTTGCCACAGGCTGGACAGGGTCGAGGTGGCTTCTTACTGCCAGGACAGTCCTTCTTAAAGTGCCCTGGTTTGCCACATGGATAGCAATTAGTGGATCCTGTACTTTACAGACCTCTAAAGCAGCCATCAGAGATTCCATCCTTCTCCTGTGCTTCCTCTCTTTTTCCTGGGCCTCCTCCtGATCCCTGCTGTAAAAGACCG LQLTFDKSVFKISAILHPSTYLNKILLGSEQGSLQLWNVKSNKLLYTFPGWKVGVTALQQ|epwdpsvllehlgdqfwtemslrlcrqsdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11042 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1096 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 10 8 18 78 66 ENST00000698404.1 ENST00000577551.5 upstream upstream duplicates(5),mismappers(1),mismatches(2) CGCGGGGTGGCGGAGCCCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11043 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1097 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22096372:+ chr9:21994138-22128102:+ chr9:22096371:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 3 30 78 17 ENST00000698404.1 ENST00000428597.6 upstream upstream duplicates(5),mismappers(1),mismatches(1) GCGGAGCCCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|GTACCAGAGATATAATAATGAGAAACAGACATGCTCCCTCCCCTCATTGAGGTTACAGCTTAGTGTGGAGACACACAGATGCCTAACGCACTATGGTATGGAAGGTGCTATGGACACAGTGCTCAAATCCATGATCTACATAG___GTGGAGAACTTCAGTAGAGGAAGTGGC...ACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACCAGTGACTTAG___CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11044 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1098 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22097258:+ chr9:21994138-22128102:+ chr9:22097257:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 5 26 78 26 ENST00000698404.1 ENST00000428597.6 upstream upstream duplicates(6),mismappers(1),mismatches(1) GCGGAGCCCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACCAGTGACTTAG___ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11045 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1099 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22118644:+ chr9:21994138-22128102:+ chr9:22118643:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 2 13 78 86 ENST00000698404.1 ENST00000428597.6 upstream upstream duplicates(5),mismappers(1),mismatches(2) GCGGAGCCCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAGAATAAAACTTAATCCCTTAAGTAGATTCACCATAAGTTAGCTCAGAGCAATTCCAGTGCAAGTATGGTCTGTGATCCAGTAG___TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11046 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 1 13 19 10 ENST00000698399.1 ENST00000580576.6 upstream upstream duplicates(3) CTGTGGGGTTACGGAAGAAAACTGAATAGGCAGCCAAGTTGGCCCAGGAGGGGCTGGGAGGCTTCCGGGTGCCGGGAAGGTGGTCCCGGTCTCCATTTCCACTGGTACGAAGGCTTGGAGGCGCCTCTATGGTGAGGGCTTTTGAACCGCCATCCCCTCCTGATCCCTTGGAAAGGAGGAGCCTTCAGAGCTGAGGAGGGGGAAGTCCAGGAAAAGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|GCTTTGGTATCAGGATGATTCTGGCCTCATAAAATGAGaTGGGGAGAATTCCCTCTTTTTCTATTGcATGGAATAGTTT...GAGAAACAGACATGCTCCCTCCCCTCATTGAGGTTACAGCTTAGTGTGGAGACACACAGATGCCTAACGCACTATGGTATGGAAGGTGCTATGGACACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11047 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22097258:+ chr9:21994138-22128102:+ chr9:22097257:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 1 11 19 26 ENST00000698399.1 ENST00000428597.6 upstream upstream duplicates(2) CTGTGGGGTTACGGAAGAAAACTGAATAGGCAGCCAAGTTGGCCCAGGAGGGGCTGGGAGGCTTCCGGGTGCCGGGAAGGTGGTCCCGGTCTCCATTTCCACTGGTACGAAGGCTTGGAGGCGCCTCTATGGTGAGGGCTTTTGAACCGCCATCCCCTCCTGATCCCTTGGAAAGGAGGAGCCTTCAGAGCTGAGGAGGGGGAAGTCCAGGAAAAGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACCAGTGACTTAG___ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11048 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 2 8 19 66 ENST00000698399.1 ENST00000577551.5 upstream upstream duplicates(2) TACGGAAGAAAACTGAATAGGCAGCCAAGTTGGCCCAGGAGGGGCTGGGAGGCTTCCGGGTGCCGGGAAGGTGGTCCCGGTCTCCATTTCCACTGGTACGAAGGCTTGGAGGCGCCTCTATGGTGAGGGCTTTTGAACCGCCATCCCCTCCTGATCCCTTGGAAAGGAGGAGCCTTCAGAGCTGAGGAGGGGGAAGTCCAGGAAAAGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAGAATAAAACTTAATCCCTTAAGTAGATTCACCATAAGTTAGCTCAGAGCAATTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11049 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22118644:+ chr9:21994138-22128102:+ chr9:22118643:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 2 7 19 86 ENST00000698399.1 ENST00000428597.6 upstream upstream duplicates(1),low_entropy(1) TACGGAAGAAAACTGAATAGGCAGCCAAGTTGGCCCAGGAGGGGCTGGGAGGCTTCCGGGTGCCGGGAAGGTGGTCCCGGTCTCCATTTCCACTGGTACGAAGGCTTGGAGGCGCCTCTATGGTGAGGGCTTTTGAACCGCCATCCCCTCCTGATCCCTTGGAAAGGAGGAGCCTTCAGAGCTGAGGAGGGGGAAGTCCAGGAAAAGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|CTATGTCTCACAGTCCAGACTTGGAGTACAAGTAATAAGAAGAATAAAACTTAATCCCTTAAGTAGATTCACCATAAGTTAGCTCAGAGCAATTCCAGTGCAAGTATGGTCTGTGATCCAGTAG___TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGCAGCTTTCTGCTACATGGAGGCTAGGGCCAGAGTCAAGATTTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11050 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120200:+ chr9:21994138-22128102:+ chr9:22120199:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 3 1 5 78 94 ENST00000698404.1 ENST00000428597.6 upstream upstream duplicates(2),mismappers(1),mismatches(1) CCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGCAGCTTTCTGCTACATGGAGGCTAGGGCCAGAGTCAAGATTTATGCTTTGCAGCACACTGGTCAGCTGTTTTTGCAAATCAGATTAAATGATTTTTAAATGAGGCTGAGAGCATGGGAGATACTAATGTGTGTTTCCTTGTGAGCTACTGCATAA___GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11051 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120200:+ chr9:21994138-22128102:+ chr9:22120199:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 2 3 19 94 ENST00000698399.1 ENST00000428597.6 upstream upstream duplicates(1),mismappers(1) GGCTGGGAGGCTTCCGGGTGCCGGGAAGGTGGTCCCGGTCTCCATTTCCACTGGTACGAAGGCTTGGAGGCGCCTCTATGGTGAGGGCTTTTGAACCGCCATCCCCTCCTGATCCCTTGGAAAGGAGGAGCCTTCAGAGCTGAGGAGGGGGAAGTCCAGGAAAAGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATTGAGGCCTTTGCAGCTTTCTGCTACATGGAGGCTAGGGCCAGAGTCAAGATTTATGCTTTGCAGCACACTGGTCAGCTGTTTTTGCAAATCAGATTAAATGATTTTTAAATGAGGCTGAGAGCATGGGAGATACTAATGTGTGTTTCCTTGTGAGCTACTGCATAA___GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11052 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1100 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 0 0 30 78 10 ENST00000698404.1 ENST00000580576.6 upstream upstream duplicates(5),mismappers(4),mismatches(2) CGGAGCCCGCGCGGCAGGGGCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|GCTTTGGTATCAGGATGATTCTGGCCTCATAAAATGAGTTGGGGAGAATTCCCTCTTTTTCTATTGAATGGAATAGTTTCAGAAGGAATGGTACCAGCTCCTCTTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTTTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11053 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22127103:+ chr9:21994138-22128102:+ chr9:22127102:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 78 4 ENST00000698404.1 ENST00000650946.1 upstream upstream duplicates(1),mismappers(2) GCGGGGGACGTGAGCGGCAGTCCCGGCGCGCTTCCGAGCTCCGCACCGCGCCGCGGGGACGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|ATGTAGTGTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCTACCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAA...ATTTTTGTAGTTTTGGTAGAGATGGTGTTTCACCATTTTGGCCAGGCTGGTCTTAAACTCCTGACCTTGTGATCCACCTGCCTTCGCCTCCCAAAGTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11054 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212922:- chr9:27937615-29213599:- chr9:29212920:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120504:+ chr9:21994138-22128102:+ chr9:22120503:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 19 79 ENST00000698399.1 ENST00000428597.6 upstream upstream none AGCCCCTGGACTTGTGTGCGTCGCATCCTTGGCTTGGGATTTTAAGGACACGAAGGAGAATTAACAGCGCCTCAAG|GTTAGGAAATTGAAATACAGAAAGA...TATAGATCAAAGCTGTGGCAGAACCAGGACTGGAACCTATATCTCTCTACTAATGGTTTTTTTAAAAAAATAACCTTGTTTCAAAAATATTAAAAAGcCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11055 PSEN1::LATS1 ENSG00000080815.20::ENSG00000131023.13 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSEN1 ENSG00000080815.20 protein_coding + + chr14:73136418-73223691:+ chr14:73198127:+ chr14:73603126-73690399:+ chr14:73664835:+ LATS1 ENSG00000131023.13 protein_coding - + chr6:149658153-149718105:- chr6:149676260:+ chr6:149979289-150039241:- chr6:149997396:+ chr14:73205336,chr14:73205337 chr6:149663603,chr6:149663601 NA NA chr14:73672044,chr14:73672045 chr6:149984739,chr6:149984737 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none Presenilin(58%)| Presenilin(56%)| 2 6 19 160 25 ENST00000700267.1 unknown downstream upstream duplicates(3),mismatches(2) GCGTGGCTCATCTTGGCTGTGATTTCAGTATATG___ATTTAGTGGCTGTTTTGTGTCCGAAAGGTCCACTTCGTATGCTGGTTGAAACAGCTCAGGAGAGAAATGAAACGCTTTTTCCAGCTCTCATTTACTC|CTTCATTTGTGTTTCTAATGGTGTTTGTGCCAAGAAAGGAGGTTGTCCCACCAACATTTCAAAAAGAATAACACCAACACTCCACCAATCACACAACTGTGTGTATC___CTGTTCGTAGCAACACTTCAGGTGCAATATAATTGGGAGTCCCAACCAAAGAATGTGCTAGACATCGCTGGTGCTGGCGTGCAGCTCTCCGCTCTAATGGCTT AWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYs|ficvsngvcakkggcptniskritptlhqshncvypvrsntsgai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11057 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 1 16 1570 52 ENST00000661830.1 ENST00000672942.1 downstream downstream duplicates(6) GTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11058 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE TRUE 1101 TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 1 20 4508 52 ENST00000667305.1 ENST00000672942.1 downstream downstream duplicates(11) AAAAGCAGTGGTTGTGCCAGTGCTGATCTGTCTTGATGTGAATGTGAACAATGGGAACCTGAGCTGAGCAG___TTAATGCTAGGGTGACAGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11059 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1102 TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:127958362 chr8:127738031 NA NA chr8:128970608 chr8:128750277 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 2 15 9243 52 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(8) AGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11060 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 18 7118 52 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(8) ATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCC...ATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11061 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:127958362 chr8:127738031 NA NA chr8:128970608 chr8:128750277 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 15 3032 52 ENST00000662410.1 ENST00000672942.1 downstream downstream duplicates(6) AATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11062 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:127958362 chr8:127738031 NA NA chr8:128970608 chr8:128750277 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 0 0 1516 52 ENST00000651587.1 ENST00000672942.1 downstream downstream mismatches(1) CTCGTGGCCTGGTCTgCATTATTTGAGATGgGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11063 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74288207:- chr14:74751972-74769758:- chr14:74754910:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion high none ABC_transporter(78%),ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%),ABC_tran(60%)|FYVE(100%) 1 3 11 155 68 ENST00000356924.9 ENST00000318876.9 upstream downstream duplicates(4) CGGGCACTGGCAAGACCTCCTTGCTCCGGGTTCTGGGTGGCCTCTGGACGAGTACACGGG___GCTCAGTGCAGATGCTGACGGACTTTGGGCCCCATGGGGTG...CTG___TCCAACTTGGTGGCAAGGACAGAGGGCCTGGACCAGCAGGTGGACTGGAACTG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAG___GCACTAAGTGACCGCTTCAGCGGTGAGATCCCCGATGACCAGATGGCGCACAGCTCCTTTTTTCCAGATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11064 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74288716:- chr14:74751972-74769758:- chr14:74755419:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none ABC_transporter(66%),ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%),ABC_tran(46%)|FYVE(100%) 2 1 9 154 68 ENST00000356924.9 ENST00000318876.9 upstream downstream duplicates(2) CTTCGGGAGACGCTTCTGGACATGTCCCTGAAGTCACAGGACTGCGAGATCCTGGGCGAGAGCaAGTGGGGCTTGGACAC___ACCCCCAGGGTGGCCAGCGGC...CAAAAGCCATTCTTCACTGACGGGACCCTTCGGGAGCAG___GTGATATATCCCCTGAAGGAGGTCTACCCCGACTCAG___GTTCTGCCGATGATGAGAGGATCTTGAGGTTCTTGGAATTGGCAGGCCTG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAG___GCACTAAGTGACCGCTTCAGCGGTGAGATCCCCG QKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGL|iipqrcqrsssrtgsgswavslkplvpfttrerglttlprtflgfgvlwssy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11065 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74288660:- chr14:74751972-74769758:- chr14:74755363:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none ABC_transporter(66%),ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%),ABC_tran(48%)|FYVE(100%) 0 1 9 21 68 ENST00000481348.5 ENST00000318876.9 upstream downstream duplicates(3) CAAAAGCCATTCTTCACTGACGGGACCCTTCGGGAGCAG___GTGATATATCCCCTGAAGGAGGTCTACCCCGACTCAG___GTTCTGCCGATGATGAGAGGATCTT...AGGACCCGAGCCCACCTGGGAGCACCAGCTACAG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAG___GCACTAAGTGACCGCTTCAGCGGTGAGATCCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11066 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74289483:- chr14:74751972-74769758:- chr14:74756186:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none ABC_transporter(54%),ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%),ABC_tran(25%)|FYVE(100%) 1 1 8 136 68 ENST00000356924.9 ENST00000318876.9 upstream downstream duplicates(3) CAAACCCCTAATCAAGGATCTGAGCCTAAAGATCTCCGAGGGACAGAGCCTGCTCATCACAGGCAACACGGGCACTGGCAAGACCTCCTTGCTCCGGGTTC...CGGACTTTGGGCCCCATGGGGTGCTATTCCTGCCACAAAAGCCATTCTTCACTGACGGGACCCTTCGGGAGCAG___GTGATATATCCCCTGAAGGAGGTCTACCCCGACTCAG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAG___GCACTAAGTGACCGCTTCAGCGGTGAGATCCCCG DFGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDS|dHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11067 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74290291:- chr14:74751972-74769758:- chr14:74756994:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none ABC_transporter(25%),ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%),ABC_tran(3%)|FYVE(100%) 0 2 4 155 68 ENST00000356924.9 ENST00000318876.9 upstream downstream duplicates(1) GCTTGGACAC___ACCCCCAGGGTGGCCAGCGGCAGAGCCAGCAGACACAGCATTTCTCCTTGAGCGGGTCTCCATCTCTGCCCCCTCCTCTGACAAACCCCTAATCAAGGATCTGAGCCTAAAGATCTCCGAGGGACAGAGCCTGCTCATCACAGGCAACACGGGCACTGGCAAGACCTCCTTGCTCCGGGTTCTGGGTGGCCTCTGGACGAGTACACGGG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAG___GCACTAAGTGACCGCTTCAGCGGTGAGATCCCCG LDTPPGWPAAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTR|dHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11069 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74292287:- chr14:74751972-74769758:- chr14:74758990:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none ABC_transporter_transmembrane_region_2(100%)|FYVE_zinc_finger(100%) ABC_membrane_2(100%)|FYVE(100%) 1 0 0 146 68 ENST00000356924.9 ENST00000318876.9 upstream downstream none TCGCAATCCCCATTTTCAGCGGGGTCTATGGAGACCTGAGTCCCaCAGAGCTTAGCACCCTGGTCAGCAAG___AATGCCTTTGTGTGCATCTACCTCATCAGC...GCTTCTGGACATGTCCCTGAAGTCACAGGACTGCGAGATCCTGGGCGAGAGCaAGTGGGGCTTGGACAC|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATC LLDMSLKSQDCEILGESkWGLDt|sslrgareah NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11070 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1952 TRUE 757 ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74302875:- chr14:74751972-74769758:- chr14:74769578:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |FYVE_zinc_finger(100%) |FYVE(100%) 0 1 0 108 68 ENST00000356924.9 ENST00000553891.5 upstream downstream none GCGGTCGCGGGGCCCGCGCCCGGAGCTGGCGCCAG|ATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTG...ATGTCCTAACTGTGGCGTGGTCTATCGTAGTCGGCAGTACTGGTTTGGAAACCAAGATCCTGTGGATACGGTGGTGCGGACAGAGATTGTGCATGTGTGGC AVAGPAPGAGAr|sslrgareahpgpvpeagpfp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11071 CDKN2B-AS1::MTAP ENSG00000240498.9::ENSG00000099810.21 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:21995161:+ chr9:21994138-22128102:+ chr9:21995160:+ MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21910759:+ chr9:21802635-21937650:+ chr9:21910758:+ chr9:22001221,chr9:22001214 chr9:21906570,chr9:21906560 NA NA chr9:22001220,chr9:22001213 chr9:21906569,chr9:21906559 NA NA sense sense unknown exon/splice-site intron duplication high none none none 3 5 4 4 15 ENST00000428597.6 unknown downstream upstream duplicates(3),mismappers(1) CCTGGCTCCCCTCGTCGAAAGTCTTCCATTCTTCAAACTAGATTATTTAAAAATGAAAAAGGAAGAAAGGAAAGCGAGGTCATCTCATTGCTCTATCCGCCAATCAGGAGGCTGAATGTCAGTTTTGAACTAAAAGCCGCTCCGCTCCTCTTCTAGATTTGGAAAACAAGCGAAATTAAACTAAACCGCTGCACGCCTCTGACGCGACATCTGGACACGGCGCGGCGCTGGCGCTGCCGGAGCTGTCGACCCGGCCTGGCGCCGGACTAG|GTGTGCTACCAGTATCACAGTCCAACTCCAGAGTATTTCCATCGCTCTCCAAAATCACCATATCTATTAGCAACCACTCTTCAAGTCCGCATCCCCCAGCCTTTGGAAACCACAGATTTCCTCACCGCCTCTAAGAAATTGCCTATTTTGAGGCTCAAAGTAAAGGGTTGGAGGAAGATCTACCAACCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11072 STXBP5::ENSG00000253288 ENSG00000164506.16::ENSG00000253288.2 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147291172:+ chr6:147525316-147712146:+ chr6:147612308:+ ENSG00000253288 ENSG00000253288.2 lncRNA - + chr8:137809444-138083657:- chr8:138063054:+ chr8:138821687-139095900:- chr8:139075297:+ NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site intron translocation/5'-5' high none LLGL2(28%),WD_domain__G-beta_repeat(100%)| LLGL(36%),WD40(100%)| 5 0 6 234 27 ENST00000706856.1 unknown downstream upstream duplicates(2),mismappers(1),multimappers(3) GCTTTTGATTGGCTTTGAATCTGGAACAGTAGTTTTATGGGACCTCAAATCAAAGAAAGCCGACTACAGATACACATATGATGAG___GCTATCCACTCTGTTGCTTGGCATCATGAAGGAAAACAATTTATTTGCAGTCATTCAGATGGCACCTTGACTATATGGAATGTAAGGTCCCCTGCTAAACCAGTACAGACAATCACTCCACATG___GAAAACAGTTAAAGGATGGGAAGAAGCCAGAACCATGCAAACCTATCCTCAAGGTGGAATTCAAAACGACTAGATCTGG|TTTTGAGATGGAGTCTCATCCTTTCACCCAAGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGTCTCCTGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGACTACAG___CAACATGGATGCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11073 ACER2::TEK ENSG00000177076.6::ENSG00000120156.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE TRUE 1103 FALSE NA FALSE NA ACER2 ENSG00000177076.6 protein_coding + + chr9:19409009-19452505:+ chr9:19424841:+ chr9:19409007-19452503:+ chr9:19424839:+ TEK ENSG00000120156.22 protein_coding + + chr9:27109141-27230174:+ chr9:27172616:+ chr9:27109139-27230172:+ chr9:27172614:+ chr9:19430084,chr9:19430081 chr9:27170341,chr9:27170331 NA NA chr9:19430082,chr9:19430079 chr9:27170339,chr9:27170329 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Ceramidase(44%)|Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%) Ceramidase(37%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),fn3(100%),hEGF(100%) 0 2 4 13 14 ENST00000340967.3 ENST00000615002.4 downstream upstream duplicates(2),mismappers(1),mismatches(1) GGAATTGGATCCGTCTcCTTCCATGCAACCCTTAGTTTCTTGGGTCAGATGCTTGATGAACTTGCAGTCCTTTGGGTTCTGATGTGTGCTTTGGCCATGTGGTTCCCCAGAAGGTATCTACCAAAGATCTTTCGGAATGACCG|GATGTGAAGCCCAGAAGTGGGGACCTGAATGCAACCATCTCTGTACTGCTTGTATGAACAATGGTGTCTGCCATGAAGATACTGGAGAATGCATTTGCCCTCCTGGGTTTATGGGAAGGACGTGTGAGAAGG___CTTGTGAACTGCACACGTTTGGCAGAACTTGTAAAGAAAGGTGCAGTGGACAAGAGGGATGCAAGTCTTATGTGTTCTGTCTCCCTGACCC GIGSVsFHATLSFLGQMLDELAVLWVLMCALAMWFPRRYLPKIFRNDr|m* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Angiopoietin-1 receptor TK Tie Q02763 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11075 SNX29::MMP28 ENSG00000048471.14::ENSG00000271447.6 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX29 ENSG00000048471.14 protein_coding + + chr16:11976734-12574287:+ chr16:12129758:+ chr16:12070591-12668144:+ chr16:12223615:+ MMP28 ENSG00000271447.6 protein_coding - - chr17:35756249-35795707:- chr17:35779323:- chr17:34083268-34122711:- chr17:34106327:- chr16:12160294,chr16:12160295 chr17:35785807,chr17:35785806 NA NA chr16:12254151,chr16:12254152 chr17:34112811,chr17:34112810 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none RUN_domain(100%)|Hemopexin(100%),Matrixin(100%),Putative_peptidoglycan_binding_domain(90%) RUN(100%)|DUF4637(100%),Hemopexin(100%),PG_binding_1(1%),Peptidase_M10(100%) 1 0 3 36 5 ENST00000566228.6 ENST00000619655.4 downstream downstream mismatches(1) CGGAAGCCTGGAGAACGGGACAGGACCAGAGGACCACGTTCTCCCgGATCCTGGACTTCGGTACAG___TGTGGAAGCCAGCTCTCCAGGCCACGGAAGTCCTC...CGCCAGGCCACTGTGGCCATGATGAACAGGAAGGATGAGCTGGAGGAGGAGAACAG___ATCACTGCGAAACCTGCTCGACGGTGAGATGGAGCACTCAGCCGCGCTCCGGCAAGAGGTGGACACCTTGAAAAGGAAGGTGGCTGAACAGGAGGAGCGGCAGGGCATGAAGGTCCAGGCGCTGGCCAG|GCATTCCTAGAGAAGTACGGATACCTCAATGAACAGGTCCCCAAAGCTCCCACCTCCACTCGATTCAGCGATGCCATCAG___AGCGTTTCAGTGGGTGTCCCAGCTACCTGTCAGCGGCGTGTTGGACCGCGCCACCCTGCG RQATVAMMNRKDELEEENRSLRNLLDGEMEHSAALRQEVDTLKRKVAEQEERQGMKVQALAr|hs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RUN domain containing 2A 2 PMBL, Hodgkin lymphoma leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11076 HSD17B7P2::WDR72 ENSG00000290439.1::ENSG00000166415.15 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HSD17B7P2 ENSG00000290439.1 lncRNA + + chr10:38356380-38378505:+ chr10:38371173:+ chr10:38645308-38667433:+ chr10:38660101:+ WDR72 ENSG00000166415.15 protein_coding - - chr15:53513741-53762878:- chr15:53523322:- chr15:53805938-54055075:- chr15:53815519:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 0 1 3 17 6 ENST00000494540.5 ENST00000396328.5 downstream downstream duplicates(1) AATGCATTCACTTTGACACCATATAATGGAACAGAAGCTCTG___GTATGGCTTTTCCACCAAAAGCCTGAATCTGTCAATCCTCTGATCAAATATCTGAGTGCCACCACTGGCTTTGGAAGAAATTACATTATGACCCAGAAG|CTCCAGTCAGCCCGGTCAAGCATGACAGCAACTCAAACTCGGCAAACTTCCAA...ATGTGCCTTGGAAGAGTCTGAGAGTCCAG___GTGAGCCAAGGCATCATTCATGGATAGCAAAGGTCTGCCCCTGCAAGGTGTCTTAAATGGAATCTCATCAGTAGGAGCTGAATTTGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11077 HSD17B7P2::WDR72 ENSG00000099251.15::ENSG00000166415.15 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HSD17B7P2 ENSG00000099251.15 transcribed_unprocessed_pseudogene + + chr10:38356455-38378107:+ chr10:38371173:+ chr10:38645383-38667035:+ chr10:38660101:+ WDR72 ENSG00000166415.15 protein_coding - - chr15:53513741-53762878:- chr15:53523322:- chr15:53805938-54055075:- chr15:53815519:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 0 1 3 17 6 ENST00000471365.1 ENST00000396328.5 downstream downstream duplicates(1) AATGCATTCACTTTGACACCATATAATGGAACAGAAGCTCTG___GTATGGCTTTTCCACCAAAAGCCTGAATCTGTCAATCCTCTGATCAAATATCTGAGTGCCACCACTGGCTTTGGAAGAAATTACATTATGACCCAGAAG|CTCCAGTCAGCCCGGTCAAGCATGACAGCAACTCAAACTCGGCAAACTTCCAA...ATGTGCCTTGGAAGAGTCTGAGAGTCCAG___GTGAGCCAAGGCATCATTCATGGATAGCAAAGGTCTGCCCCTGCAAGGTGTCTTAAATGGAATCTCATCAGTAGGAGCTGAATTTGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11081 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE TRUE 1105 TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128155419:+ chr8:128806772-129199347:+ chr8:129167665:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 16 108 3825 ENST00000651587.1 ENST00000621592.8 downstream upstream duplicates(5),mismatches(1) TGTGCCTTCTGAATCATACCACGATTCAATTACATCCATCATTTAACAACAACAACAACTCTAGAAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCC?CCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11082 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 0 2 15 4508 3825 ENST00000667305.1 ENST00000524013.2 downstream upstream duplicates(4),mismatches(1) GTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCC?CCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11083 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070361:+ chr8:128806772-129199347:+ chr8:129082607:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 15 1073 3825 ENST00000651587.1 ENST00000524013.2 downstream upstream duplicates(4),mismatches(1) CCTGCCCATGCCATAGATCCTGCCCTGTTTGCTTCTCCTGTTGCTGCTAGTGGACATGAGGTAACCACAGCCTAGTTCTGTGATAAGCTCTTCACACCTGTACCCATATGGACTGTGGGAGAGTTTCTCTGATATGGACTGTGATGCGG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCC?CCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11084 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070272:+ chr8:128806772-129199347:+ chr8:129082518:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 15 3294 3825 ENST00000653845.1 ENST00000524013.2 downstream upstream duplicates(4),mismatches(1) AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAG...AGCTGCATCTACCCTGCCCATGCCATAGATCCTGCCCTGTTTGCTTCTCCTGTTGCTGCTAGTGGACATGAG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCC?CCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11085 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 15 4508 3825 ENST00000667305.1 ENST00000621592.8 downstream upstream duplicates(4),mismatches(1) TTTTGAGATTGGAGAATTAAG___GCCAACAGAGATTTTGAGAAACACATTGAAGGATCTGTTAACACTTGATATACCCAATAAAAGCAGTGGTTGTGCCAGTG...TTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCC?CCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11086 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 13 3939 3825 ENST00000667305.1 ENST00000524013.2 downstream upstream duplicates(4),mismatches(1) GTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTC...GCCTTCTCCCGAGGTGtGCGGGTGACCTTGGCAtATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCCACCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11087 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 1 10 7118 3825 ENST00000651587.1 ENST00000524013.2 downstream upstream duplicates(2),mismatches(1) CACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGcTCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCCACCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11088 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 10 7118 3825 ENST00000651587.1 ENST00000621592.8 downstream upstream duplicates(2),mismatches(1) AAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCCACCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11089 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 3 1 7 9243 3825 ENST00000667305.1 ENST00000621592.8 downstream upstream duplicates(3) CGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCCcCCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11090 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 9 1516 3825 ENST00000651587.1 ENST00000524013.2 downstream upstream duplicates(2) GCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCGAGCTGCTGCCCACCCCGCCCCTGTCCCCTAGCCGCCGCTCCGGGCTCTGCTCGCCCTCCTACGTTGCGGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11091 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127739019:+ chr8:128747680-128755197:+ chr8:128751265:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through medium none Myc_amino-terminal_region(73%)| Myc_N(31%)| 1 0 6 4761 7624 ENST00000621592.8 ENST00000651587.1 downstream upstream duplicates(2),mismatches(2) CAGGCTGCGCGCAAAGACAGCGGCAGCCCtAACCCCGCCCGCGGCCACAGCGTCTGCTCCACCTCCAGCTTGcACCTGCAGGgTCTGAGCGCCGgCGCCTC...CCCCTACCCTCTCAACGACAGCAGCTCGCCCAAGTCCTGCGCCTCGCAAGACTCCAGCGCCTTCTCTCCGTCCTCGGATTCTCTGCTCTCCTCGACGGAGTCCTCCCCGCAGG...TCCATGAGGAGACcCCGCCCACCACCAGCAGCGACTCTG|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11093 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1954 TRUE 758 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127740396:+ chr8:128747680-128755197:+ chr8:128752642:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(26%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(11%) 0 2 2 9243 4531 ENST00000667305.1 ENST00000621592.8 downstream upstream duplicates(1) CGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCaCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGGAGGAACAAGAAGATGAGGAAGAAATCGATGTTGTTTCTGTGGAAAAGAGGCAGGCTCCTGGCAAAAGGTCAGAGTCTGGATCACCTTCTGCTGGAGGCCACAGCAAACCTCCTCACAGCCCAC...ACGCAGCGCCgCCCTCCtgTCGGAAGGACTATCCTGCTGCCAAGAGGGTCAAGTTGGACAGTGTCAGAGTCCTGAGACAGATCAGCAACAACCGAAAATGC...GGAGGAACGAGCTAAAACGGAGCTTTTTTGCCCTGCGTGACCAGATCCCGGAGTTGGAAAACAATGAAAAGGCCCCCAAGGTAGTTATCCTTAAAAAAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 11094 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127739019:+ chr8:128747680-128755197:+ chr8:128751265:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site deletion medium none Myc_amino-terminal_region(73%)| Myc_N(31%)| 0 1 2 4761 82 ENST00000621592.8 ENST00000651587.1 downstream upstream duplicates(1) CCAGCAGCGACTCTG|ATTAAAAAACGAAGTCACATGGAAGATAAATAACATGCTCAACATCACCCAGCCAGAAGTGGTGGAGACATGGCCAACATCACAGGGGACAACTCCTGAGCCTGTGCTAGGAACAGCCAGTCTTCCTGAATTCATGATAAAGTAAGAGGTAGAACCGTGGCCAATTGTCTTTGGGAGAAAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11095 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion medium none none none 0 1 1 3377 37 ENST00000621592.8 ENST00000651587.1 downstream upstream duplicates(1) CGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGC...CTTGCAGCTGCTTAGACGCTGGATTTTTTTCGGGTAGTGGAAAACCAG|GCCTCCAGGTGTCTGCATTCTGATCCTTGAAGAGTTCATGGACCTAAGTTAAG...TTCATGATAAAGTAAGAGGTAGAACCGTGGCCAATTGTCTTTGGGAGAAAGTGGGATCAAGGACAACTCCAGGATTCTGCCTGAGATGGGACACACTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11096 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none none none 1 2 1 3377 5771 ENST00000621592.8 ENST00000667305.1 downstream upstream duplicates(1) CGGGCGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGCCAGGACCCGCTTCTCTGAAAGGCTCTCCTTGCAGCTGCTTAGACGCTGGATTTTTTTCGGGTAGTGGAAAACCAG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAAtGCTTGGAG...TGAAGACCCAGCTTGGGGCTGTCAAAG___AGGCCTGAAGAGGCAGAACACCCCAGAGGAGCCTGGGGCCACCACCCAGCATCACTGTGGGAAAACGGCAGCAG...CATGTCTGACgCCCATGACgCCACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGCgCAACAGGAGGACAGCTTCAACCCATTACGATTTCATCTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11097 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127739019:+ chr8:128747680-128755197:+ chr8:128751265:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none Myc_amino-terminal_region(73%)| Myc_N(31%)| 1 0 3 4761 5771 ENST00000621592.8 ENST00000651587.1 downstream upstream duplicates(1) CCTCCTACCAGGCTGCGCGCAAAGACAGCGGCAGCCCGAACCCCGCCCGCGGCCACAGCGTCTGCTCCACCTCCAGCTTGTACCTGCAGGATCTGAGCGCC...CCCCGAGCCCCTGGTGCTCCATGAGGAGACACCGCCCACCACCAGCAGCGACTCTG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11098 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none none none 0 1 2 3377 3809 ENST00000621592.8 ENST00000667305.1 downstream upstream duplicates(1),mismatches(1) CGAAACTTTGCCCATAGCAGCGGGCGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGCCAGGACCCGCTTCTCTGAAAGGCTCTCCTTGCAGCTGCTTAGACGCTGGATTTTTTTCGGGcAGTGGAAAACCAG|AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG___GCCAACAGAGATTTTGAGAAACACATTGAAGGATCTGTTAACACTTGATATACCCAATAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11099 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127982360:+ chr8:128806772-129199347:+ chr8:128994606:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none none none 1 0 2 3377 230 ENST00000621592.8 ENST00000670626.1 downstream upstream duplicates(1),mismatches(1) GCGAGAGGCAGAGGGAGCGAGCGGGCGGCCGGCTAGGGTGGAAGAGCCGGGCGAGCAGAGCTGCGCTGCGGGCGTCCTGGGAAGGGAGATCCGGAGCGAAT...CGAAACTTTGCCCATAGCAGCGGGCGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGCCAGGACCCGCTTCTCTGAAAGGCTCTCCTTGCAGCTGCTT...CGGGTAGTGGAAAACCAG|TCTCTTCACCCTCTGAAAACAAGAGGATGTGTAGCATAGTGAGCAACAGCTGTGTGCCGGGGACTCAGCATTAAGTAGCAcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11100 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none none none 0 1 2 3377 7624 ENST00000621592.8 ENST00000657297.1 downstream upstream duplicates(1),mismatches(1) CGAAACTTTGCCCATAGCAGCGGGCGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGCCAGGACCCGCTTCTCTGAAAGGCTCTCCTTGCAGCTGCTTAGACGCTGGATTTTTTTCGGGTAGTGGAAAACCAG|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGA...TCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___AATCAAGAGATGCATATGCAGGTTTGTTACAGAGGTATATGGGATGCGGTTGAAGTTTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11101 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070160:+ chr8:128806772-129199347:+ chr8:129082406:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none none none 0 1 1 3377 3696 ENST00000621592.8 ENST00000668123.1 downstream upstream duplicates(1) CGGGCACTTTGCACTGGAACTTACAACACCCGAGCAAGGACGCGACTCTCCCGACGCGGGGAGGCTATTCTGCCCATTTGGGGACACTTCCCCGCCGCTGC...GGATTTTTTTCGGGTAGTGGAAAACCAG|AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAGGAGCTGCATCTACCCTGCCCATGCCATAGATCC...AGGATCACCCCAGGAAtGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAAG___GTTTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11102 MYC::PVT1 ENSG00000136997.22::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE TRUE FALSE NA TRUE 1955 TRUE 759 MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127736623:+ chr8:128747680-128755197:+ chr8:128748869:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128186556:+ chr8:128806772-129199347:+ chr8:129198802:+ chr8:127738031,chr8:127737791 chr8:127820752,chr8:127870974 NA NA chr8:128750277,chr8:128750037 chr8:128832998,chr8:128883220 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion low none none none 0 1 0 3377 143 ENST00000621592.8 ENST00000651587.1 downstream upstream none ATTTTTTTCGGGTAGTGGAAAACCAG|GTAAACATAAGAAAGGAAAACTTTTGTACGGTGAACTT-GGCTAAAAAGAAGAATGAcGTCTCTGGAACTTTTGCTGCTTATAaGAATGAGAGCAAAATCCTGGCATGACCATGATCCTTCAATGAGCACCACTGTGTTGCTGCATTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 11105 WDTC1::PVT1 ENSG00000142784.16::ENSG00000249859.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27263235:+ chr1:27561123-27635127:+ chr1:27589726:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128186556:+ chr8:128806772-129199347:+ chr8:129198802:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none WD_domain__G-beta_repeat(2%)| WD40(0%)| 3 0 1 108 143 ENST00000319394.8 ENST00000651587.1 downstream upstream none GGGCCGCCCCCCCCGGACGGACATGGGCTCCTGAAGTTGCGCCGCTGCCGGTCGGGGGgAGAGACCTGACAG___GTAATTAAATGTGTATTTTGTGGACCTGGGCTTGGCTGGAATGCTCAGGGGTCCTGAAGATCCTATTATAGCTTCCTTCTGTTGAACCATTAAGAAAAGATGGCGAAAGTCAACATAACTAGAGACCTCATCCGTAGGCAGATCAA...CGGCGCTACCATGTCACTGACCCCTTTATCCGGCGGCTGGGCCTGGAAGCAGAGCTGCAG|GTAAACATAAGAAAGGAAAACTTTTGTACGGTGAACTTGGGCTAAAAAGAAGAATGAcGTCTCTGGAACTTTTG...GCTGCATTCTGTCTGGCCAATCTAGTCTATAATAGTTTTTTGTTTTGTTTTGATTTTTGTGTGTTTTTTTGTTTGTTTGTTTGTTTTGATGGAGTTTTGCT RRYHVTDPFIRRLGLEAELQ|vnirkenfctvnlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11133 RAD18::EML6 ENSG00000070950.10::ENSG00000214595.13 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1108 FALSE NA FALSE NA RAD18 ENSG00000070950.10 protein_coding - - chr3:8775402-8963773:- chr3:8890389:- chr3:8817088-9005457:- chr3:8932073:- EML6 ENSG00000214595.13 protein_coding + + chr2:54723499-54972025:+ chr2:54948882:+ chr2:54950636-55199161:+ chr2:55176019:+ chr3:8879110,chr3:8879114 chr2:54929061,chr2:54929057 NA NA chr3:8920794,chr3:8920798 chr2:55156198,chr2:55156194 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SAP_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|Anaphase-promoting_complex_subunit_4_WD40_domain(46%),HELP_motif(38%),WD_domain__G-beta_repeat(20%) SAP(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_UBOX(100%)|ANAPC4_WD40(32%),HELP(42%),WD40(1%) 7 12 11 293 56 ENST00000264926.7 ENST00000356458.8 upstream upstream duplicates(11),mismatches(1) CAGGAAGATAATATGACCTCAGTAACAAACCACTTTTCTCAATCAAAGCTGGACTCCCCAGAGGAATTGGAACCTGACAGAGAAGAGGATTCTTCTAGCTGTATTGATATTCAAGAAGTTCTTTCTTCATCAGAATCAGATTCATGCAATAG___TTCCAGTTCAGACATCATAAGAGATCTTTTAGAAGAAGAGGAAGCCTGGGAAGCATCACATAA|ACCACCCGTTAGCCGAGCAGCTCCCCAGCCTGAGAAACTGCAGAAGAACAATATCACCAAAAAAAAGAAACTGGTTGAG___GAGCTGGCTCTAGACCACGTGTTTGGCTACAGAGGTTTCGACTGTCGAAATAACCTGCATTACCTTAATGATGGCGCTGACATCATCTTCCACACAGCAGCGGCTGGCATCGTTCAGAACCTCTCCACAG___GGAGCCAGAGCTTCTATCTGGAGCACACAGATGACATCCTCTGTCTCACAGTGAACCAGCACCCCAAGTACAGAAACGTGGTGGCCACCAGCCA QEDNMTSVTNHFSQSKLDSPEELEPDREEDSSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHk|PPVSRAAPQPEKLQKNNITKKKKLVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11134 ASXL2::MSI2 ENSG00000143970.18::ENSG00000153944.12 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASXL2 ENSG00000143970.18 protein_coding - - chr2:25733753-25878487:- chr2:25878166:- chr2:25956622-26101356:- chr2:26101035:- MSI2 ENSG00000153944.12 protein_coding + - chr17:57255851-57684689:+ chr17:57624677:- chr17:55333212-55762050:+ chr17:55702038:- chr2:25865412,chr2:25865415,chr2:25865415 chr17:57633266,chr17:57633266,chr17:57633265 NA NA chr2:26088281,chr2:26088284,chr2:26088284 chr17:55710627,chr17:55710627,chr17:55710626 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none HB1__ASXL__restriction_endonuclease_HTH_domain(12%)| HARE-HTH(0%)| 3 5 19 100 41 ENST00000435504.9 unknown upstream downstream duplicates(7),mismatches(3) GGCGGTAGCAGTGGCAACGGCAGCAAGAGGACCGGCCGCCCCATAGACCCCCCCGCGCACCACCCCCGCCGCTTCCTCTGCTTGGGTGCCCCCCCGGTCTGACTTCCCTTTTCTCCCACCTTTCCCGGCACCGCGGGAAAAGCAGCGCAGGGCAGAGCAGGCAGGGAGGGCGGCCGGAGCCCGGACACGGGAGCCTCCCAGTCAGTTCAAGACCCGACATGAGGGAAAAGGGACGTAGGAAGAAGGGCAGGACCTGGGCGGAGGCCGCCAAGACG|GGTCTTGCCACCTGCTCCTTCCTGTGCACTTATTTCCCGGTGCTTGGTGACTCATTGACAGAAGCCTGCCCAAGCGAGGCAGAAGGACCCAGCAGCTCTGCACTGACTGCTAGCTAAGGAGCAGGAGCCCGGTGGGATGTTGAGCTCAGCAACCCGACGGAGAAAGAAGGAAGGAAGAACAGCAAAGGCCAGGGCTCAGATGCCTTAAATGGACACATGCATACTGGCGCCTTCCTTCGTATTTATTTC MREKGRRKKGRTWAEAAKT|glatcsflctyfpvlgdslteacpseaegpsssaltas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE additional sex combs like 2, transcriptional regulator 2 melanoma, CCRCC, AML epithelial, leukaemia_lymphoma TSG other,nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 11135 SORT1::SCAT1 ENSG00000134243.12::ENSG00000267123.7 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SORT1 ENSG00000134243.12 protein_coding - - chr1:109309568-109397918:- chr1:109367408:- chr1:109852190-109940540:- chr1:109910030:- SCAT1 ENSG00000267123.7 lncRNA - + chr17:78605233-78632155:- chr17:78617427:+ chr17:76601315-76628237:- chr17:76613509:+ chr1:109360775,chr1:109360781 chr17:78617207,chr17:78617201 NA NA chr1:109903397,chr1:109903403 chr17:76613289,chr17:76613283 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none Sortilin__neurotensin_receptor_3_(1%)| BNR_6(0%),Sortilin-Vps10(0%)| 6 5 11 882 19 ENST00000256637.8 unknown upstream upstream duplicates(10),mismatches(2) CGGCCGGGTCCGGGACTTCGTCGCCAAGCTGGCCAACAACACGCACCAG___CATGTGTTTGATGATCTCAGAGGCTCAGTATCCTTGTCCTGGGTTGGAGATAGCACTGGG___GTCATTCTAGTCTTGACTACCTTCCATGTACCACTGGTAATTATGACTTTTGGACAGTCCAAGCTATATCGAAG|GTATTTCTGGAGAAGACCTAAAGGACAGGGAACTACTGTCTTGCAATCCTAAGGAGAAACTCCAGAAGCCAGAGCTGGCTTGCAGCTTAGAAGAAAACTTTCCTCCCATGGAATTGTGTCCCTTGGCAGTCCTCATAACGCCCAGGAATGACAAAAATCTCAGAATtACATCTTGCTGGAAAGGATGCAGCGAATGTGGCCTAGAAATATAAATTCACATTACAGATGATTTCAGAACCCTGGCTTAGGCCTGAAAAGGACCCATGAGGCC GRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRr|yfwrrpkgqgttvlqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11136 EIF2AK2::NSL1 ENSG00000055332.19::ENSG00000117697.15 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIF2AK2 ENSG00000055332.19 protein_coding - - chr2:37099210-37157522:- chr2:37119959:- chr2:37326353-37384665:- chr2:37347102:- NSL1 ENSG00000117697.15 protein_coding - + chr1:212726153-212791782:- chr1:212747791:+ chr1:212899495-212965124:- chr1:212921133:+ chr2:37117766 chr1:212747336 NA NA chr2:37344909 chr1:212920678 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Double-stranded_RNA_binding_motif(100%),Protein_kinase_domain(56%)| PK_Tyr_Ser-Thr(1%),Pkinase(55%),dsrm(100%)| 0 4 11 615 12 ENST00000681507.1 unknown upstream upstream duplicates(6),mismappers(3),multimappers(1) GACTAAGTGCCTTTTCATCCAAATGGAATTCTGTGATAAAGGGACCTTGGAACAATGGATTGAAAAAAGAAGAGGCGAGAAACTAGACAAAGTTTTGGCTTTGGAACTCTTTGAACAAATAACAAAAGGGGTGGATTATATACATTCAAAAAAATTAATTCATAGAGATCTTAAG|GGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGTTCAAGTGATTGTCATATCTCAGCCTCCTGAGTAGCTGGGACTACAGGCATGTGCCACCAGGCCTGGCTAATTTTTGCATTTTTTGGTAGAGATGGGGTTTCACCGTGTTGGTCAGGCTGGTCTCGAACTCCCAACCCCAAGTGATCCTTCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACTGTGACC TKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLK|gltlsprlecsgvisahcnlcllvqvivisqppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Interferon-induced Other PEK P19525 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11139 RYR3::ENSG00000259345 ENSG00000198838.14::ENSG00000259345.7 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RYR3 ENSG00000198838.14 protein_coding + + chr15:33310962-33866121:+ chr15:33473538:+ chr15:33603163-34158322:+ chr15:33765739:+ ENSG00000259345 ENSG00000259345.7 lncRNA - + chr15:38865322-39427195:- chr15:39335830:+ chr15:39157523-39719396:- chr15:39628031:+ chr15:33500797,chr15:33500798 chr15:39244564,chr15:39244562 NA NA chr15:33792998,chr15:33792999 chr15:39536765,chr15:39536763 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(23%)| Ins145_P3_rec(70%)| 0 2 2 50 14 ENST00000415757.7 unknown downstream upstream duplicates(1),mismappers(8),mismatches(3) CGGAGGCTGGGGCACCGCCGACGCCTCGGGAGCCATGGCCGAAGGGGGAGAAGGAGGCGAGGACGAGATCCAGTTTCTGAGGACT___GAGGATGAAGTGGTACTCCAGTGCATCGCCACCATTCATAAGGAGCAGAGGAAGTTCTGCCTGGCAGCCGAGGGACTTGGGAATCGCCTGTGCTTCTTGGAACCCACTTCAGAAGCCAAG|AGTCTTGCTCTGTCACCCAGGCTGGAGTACAGTGGCATGATCTCGGCTCACTGCAACCTATGCCTCCCAGGTTCAACCAATTCTCCTGCCTCAGGCTCCCGAGTAGCTGGGACTACAGGTGCACACCACCAGGCCCGG___GAAAAGAAAAAGACTGGCCTGAGGCGGAAATAGAAGACACAATAAATCCTTCTGTGAACTCTTGCCAACCATATTTCTCCTTACTTC MAEGGEGGEDEIQFLRTEDEVVLQCIATIHKEQRKFCLAAEGLGNRLCFLEPTSEAK|slalsprleysgmisahcnlclpgstnspasgsrvagttgahhqarekkktglrrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11151 KDM1A::HTR1D ENSG00000004487.18::ENSG00000179546.5 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM1A ENSG00000004487.18 protein_coding + + chr1:23019443-23083689:+ chr1:23019947:+ chr1:23345936-23410182:+ chr1:23346440:+ HTR1D ENSG00000179546.5 protein_coding - + chr1:23191895-23217502:- chr1:23210869:+ chr1:23518388-23543995:- chr1:23537362:+ chr1:23026340,chr1:23026509,chr1:23026339 chr1:23205632,chr1:23205688,chr1:23205628 NA NA chr1:23352833,chr1:23353002,chr1:23352832 chr1:23532125,chr1:23532181,chr1:23532121 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none none none 1 2 0 45 6 ENST00000356634.7 unknown downstream upstream none GCGGAACCGCCGGGGTCCGCAGGGCCTCAGGCCGGCCCTACTGTCGTGCCTGGGTCTGCGACCCCCATGGAAACTGGAATAGCAGAGACTCCGGAGGGGCGTCGGACCAGCCGGCGCAAGCGGGCGAAG|ATGCTGCACACCTGGGTCCGCAGAGAACACTTTGAGCTGATGGAGTGAATATTTCCAGGACAGAGGAGAAG...GAGAAGAGATGAGGCAATTTGTACAAAGGACAGCAACTGTATCCATGTCCCAGAAGGAAATCTATACAACCTTGA___GCCAGCCCTGTCCAATGCAAAGGCG...ATTTTTCAGAAAAAAATACCTGAGACTGATCATTCAGGGTCCTTGGAAATGTAATTGCATATAGGTAAGCCAT AEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAK|mlhtwvrrehfelme* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11155 ADCY9::PPL ENSG00000162104.10::ENSG00000118898.16 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 1965 TRUE 760 ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:4113750:- chr16:4003388-4166443:- chr16:4163751:- PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4904040:- chr16:4932508-5010742:- chr16:4954041:- chr16:4081391,chr16:4081393 chr16:4931635,chr16:4931634 NA NA chr16:4131392,chr16:4131394 chr16:4981636,chr16:4981635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Adenylate_and_Guanylate_cyclase_catalytic_domain(47%)|SH3_domain(100%) Guanylate_cyc(0%)|SH3_10(100%) 0 1 1 71 30 ENST00000294016.8 ENST00000592772.1 upstream downstream none CAAAGTTCACATTTCTGAGGCCACCGCAAAATACTTAGATGACCGGTACGAAATGGAAGATGGGAAAGTTATTGAACGGCTGGGCCAGAGCGTGGTTGCTGACCAGTTGAAAG|GACCTGGCTCGGCTGCAGGAGGGgCGGCAGCCTGAGCACCGGGACGTGACCCTGCAGAAGGTGTTGG...CATGAAGCACCCACAGGGGGACATGATCGCCGAGGA___TATCCGCCAGCTGAAGGAGCGTGTGACCAACCTGCGCGGGAAACACAAGCAGATCTACAGGCTGG KVHISEATAKYLDDRYEMEDGKVIERLGQSVVADQLK|gpgsaaggaaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11156 ADCY9::PPL ENSG00000162104.10::ENSG00000118898.16 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 1965 TRUE 760 ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:4113750:- chr16:4003388-4166443:- chr16:4163751:- PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4910949:- chr16:4932508-5010742:- chr16:4960950:- chr16:4081391,chr16:4081393 chr16:4931635,chr16:4931634 NA NA chr16:4131392,chr16:4131394 chr16:4981636,chr16:4981635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Adenylate_and_Guanylate_cyclase_catalytic_domain(47%)|SH3_domain(100%) Guanylate_cyc(0%)|SH3_10(100%) 0 1 1 71 23 ENST00000294016.8 ENST00000345988.7 upstream downstream none CAAAGTTCACATTTCTGAGGCCACCGCAAAATACTTAGATGACCGGTACGAAATGGAAGATGGGAAAGTTATTGAACGGCTGGGCCAGAGCGTGGTTGCTGACCAGTTGAAAG|CATCTCTAACAAGGAGCTCTCGGAGCTGATCGAGCAGCTGCAGAAGAATGCCGACCAGGTGGAGAAGAACA...GTGTTGGACTCTGAGcAGCTGCTCTATGTGCTAGAGGCGGATGCGGCCATTGCCAAGCACATGAAGCACCCACAGGGGGACATGATCGCCGAGGA___TATCCG KVHISEATAKYLDDRYEMEDGKVIERLGQSVVADQLK|asltrssrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11157 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 1966 TRUE 761 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79809795:- chr12:80167343-80329240:- chr12:80203575:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79808878 chr12:79683557 NA NA chr12:80202658 chr12:80077337 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 2 0 5 368 689 ENST00000261207.9 ENST00000328827.9 upstream downstream duplicates(4),mismappers(1) CAAAGAAGAAGAGAGAAAAGATGAGTCTCCTGCAACTTGGAGGTTAGGACTTAGAAAGACGGGCAGCTATGGTGCACTTGCTGAAATCACAGCATCTAAAGAGGGTCAGAAAGAAAAAGATACTGCAGGTGTTACACGTTCAGCTTCAAGTCCCAGACTTTCCTCCTCTTTGGATAATAAAGAAAAG|TGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATaCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG___CACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATAGAAGTGGG KEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKDTAGVTRSASSPRLSSSLDNKEK|CLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11158 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 1966 TRUE 761 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79934695:- chr12:80167343-80329240:- chr12:80328475:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79808878 chr12:79683557 NA NA chr12:80202658 chr12:80077337 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ankyrin_repeats_(3_copies)(16%)| Ank(0%),Ank_2(0%),Ank_3(0%),Ank_4(0%),Ank_5(0%)| 1 0 0 405 689 ENST00000261207.9 ENST00000328827.9 upstream downstream duplicates(1) GCGGACGCGAAGCAGAAGCGGAACGAGCAGCTGAAACGCTGGATCGGCTCCGAGACGGACCTCGAGCCTCCGGTGGTGAAGCGCCAGAAGACCAAGGTGAA...CGCGGCGCCGACATCAATTACGCCAATGTGGACGGACTCACTGCCCTGCACCAG|TGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGA RGADINYANVDGLTALHQ|CLDEYEDDEAGQKER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11177 ENSG00000291073::GNPTG ENSG00000291073.1::ENSG00000090581.11 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1109 TRUE 1971 TRUE 762 ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1361743:+ chr16:1401932-1415738:+ chr16:1411744:+ chr16:21503072,chr16:21503075 chr16:1354751,chr16:1354748 NA NA chr16:21514393,chr16:21514396 chr16:1404752,chr16:1404749 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Glucosidase_II_beta_subunit-like_protein(100%) |PRKCSH(100%),PRKCSH_1(100%) 22 28 41 184 420 ENST00000522841.6 ENST00000204679.9 upstream upstream duplicates(12),mismatches(35) TGGCGCTGGTGGTGTGGGCCGCGTGCGGCGTCTTCTCCATCGTGGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTAGCCTGCCACTCCGTGC|GACCCGTGCATCTCTTCCGACTCTCGGGCAAGTGCTTCAGCCTGGTGGAGTCCAC___GTACAAGTATGAGTTCTGCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGCTGGAACGCCTACAGTGGGATCCTCGG___CATCTGGCACGAGTGGGAGATCGCCAACAACACCTTCACGGGCATGTGGATGAGGGACGGTGACGCCTGCCGTTCCCGGAGCCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11178 ENSG00000291073::GNPTG ENSG00000291073.1::ENSG00000090581.11 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1971 TRUE 762 ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1361872:+ chr16:1401932-1415738:+ chr16:1411873:+ chr16:21503072,chr16:21503075 chr16:1354751,chr16:1354748 NA NA chr16:21514393,chr16:21514396 chr16:1404752,chr16:1404749 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Glucosidase_II_beta_subunit-like_protein(86%) |PRKCSH(66%),PRKCSH_1(78%) 2 0 25 184 528 ENST00000522841.6 ENST00000683366.1 upstream upstream mismatches(11) CCGCGTGCGGCGTCTTCTCCATCGTGGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTAGCCTGCCACTCCGTGC|GTACAAGTATGAGTTCTGCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGCTGGAACGCCTACAGTGGGATCCTCGG___CATCTGGCACGAGTGGGAGATCGCCAACAACACCTTCACGGGCATGTGGATGAGGGACGGTGACGCCTGCCGTTCCCGGAGCCGGCAGAGCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11179 ENSG00000291073::GNPTG ENSG00000291073.1::ENSG00000090581.11 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1971 TRUE 762 ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1361695:+ chr16:1401932-1415738:+ chr16:1411696:+ chr16:21503072,chr16:21503075 chr16:1354751,chr16:1354748 NA NA chr16:21514393,chr16:21514396 chr16:1404752,chr16:1404749 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Glucosidase_II_beta_subunit-like_protein(100%) |PRKCSH(100%),PRKCSH_1(100%) 1 1 41 184 45 ENST00000522841.6 ENST00000683887.1 upstream upstream duplicates(4),mismatches(16) GTGGTGTGGGCCGCGTGCGGCGTCTTCTCCATCGTGGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTAGCCTGCCACTCCGTGC|ACAGGTTCTGTGCTTGGACCCTGGGGATCAGTGTGAGGTCTCTTCCAGGACCCGTGCATCTCTTCCGACTCTCGGGCAAGTGCTTCAGCCTGGTGGAGTCCAC___GTACAAGTATGAGTTCTGCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGCTGGAACGCCTACAGTGGGATCCTCGG___CATCTGGCACGAGTGGGAGATCGCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11180 ENSG00000291073::GNPTG ENSG00000291073.1::ENSG00000090581.11 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 1971 TRUE 762 ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1357700:+ chr16:1401932-1415738:+ chr16:1407701:+ chr16:21503072,chr16:21503075 chr16:1354751,chr16:1354748 NA NA chr16:21514393,chr16:21514396 chr16:1404752,chr16:1404749 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Glucosidase_II_beta_subunit-like_protein(100%) |PRKCSH(100%),PRKCSH_1(100%) 0 0 0 184 21 ENST00000522841.6 ENST00000526820.5 upstream upstream mismatches(2) CGAGGcGGCAGCCAAGCTCGTAGCCTGCCACTCCGTGC|AGACGGGGTTTCACCGTGTTAGCCAGGACGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCACAGTGC...TCTTCCGACTCTCGGGCAAGTGCTTCAGCCTGGTGGAGTCCAC___GTACAAGTATGAGTTCTGCCCGTTCCACAACGTGACCCAGCACGAGCAGACCTTCCGCTGGAACGCCTACAGTGGGATCCTCGG___CATCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11181 ZFAND3::BTBD9 ENSG00000156639.12::ENSG00000183826.19 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:38116739:+ chr6:37787503-38122400:+ chr6:38084515:+ BTBD9 ENSG00000183826.19 protein_coding - + chr6:38168451-38640148:- chr6:38396436:+ chr6:38136227-38607924:- chr6:38364212:+ chr6:38133958,chr6:38133959 chr6:38396221,chr6:38396219 NA NA chr6:38101734,chr6:38101735 chr6:38363997,chr6:38363995 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none A20-like_zinc_finger(100%),AN1-like_Zinc_finger(50%)| zf-A20(100%),zf-AN1(0%)| 17 19 34 226 98 ENST00000287218.9 unknown downstream upstream duplicates(13),low_entropy(1),mismappers(2),mismatches(7) ATGTAACTTCACCGAGTAAAGAGGAGT___GTGGGCCATGCACAGACACAGCTCATGTCTCATTAATCACACCAACAAAAAGATCCTGTGGTACAG___ATTCACAGTCTGAGAATGAGGCTTCACCAGTAAAACGGCCACGACTACTTGAGAATACGGAACGGTCCGAGGAAACCAGTCGATCTAAACAGAAGAGTCGACGTCGGTGCTTCCAGTGCCAAACCAAACTGGAGCTGGTGCAGCAGGAATTGGGATCGTGTCGCTGCG|TTGCCAAGCGGTTGGAGGAAGTCAATGGGAAACAAAAAATTAGGGCGAAGCCGTGTCTGAACAACCTGCTGTGTGTCTTGCCATGACCAGCAAG___GTGAAGAGGAGCCCTGAGAAGTTTcAGTAGAGGAGTGACATGACTTCGTTCaATTTTTACAACTTTCATCAAGATACATGTTCCTAACTACAAGGAGCCCCACCTACTTGGTTCTGACATATCACTGGGTTCTATGAAGCACAATTTTAAAA VTSPSKEECGPCTDTAHVSLITPTKRSCGTDSQSENEASPVKRPRLLENTERSEETSRSKQKSRRRCFQCQTKLELVQQELGSCRC|vakrleevngkqkirakpclnnllcvlp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11188 GNPTG::MRTFB ENSG00000090581.11::ENSG00000186260.17 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1352306:+ chr16:1401932-1415738:+ chr16:1402307:+ MRTFB ENSG00000186260.17 protein_coding + + chr16:14071319-14266773:+ chr16:14079290:+ chr16:14165176-14360630:+ chr16:14173147:+ chr16:1354751 chr16:14073641 NA NA chr16:1404752 chr16:14167498 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site deletion high none |RPEL_repeat(100%),SAP_domain(100%) |RPEL(100%),SAP(100%) 1 1 1 95 15 ENST00000527168.6 ENST00000574998.5 downstream upstream none CCGTTCCCCGCTGACCTTGCCGCTTCCCGTAGGGTGAACAACCCGTTCTTGCCTCAGGCCAGTCGCCTCCAGGCCAAGAGGGATCCTTCACCCGTGTCTG|GTTCACAATAAAGGTGCTAAGAAAGAGAATGTAAGACAGGAAAATAATTAAATATTCTTACCGAG___ATCACTCCTGTAAACTCTCACAAGAGATGTTTATAAAACACTTGGAACAATACAGATTGTACTAAGAAAATGTGCTTTGATCAACTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11191 CASC19::PCAT1 ENSG00000254166.4::ENSG00000253438.5 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127229130:- chr8:127568568-128431295:+ chr8:128241375:- chr8:127211709,chr8:127211705 chr8:127241124,chr8:127241124 NA NA chr8:128223954,chr8:128223950 chr8:128253369,chr8:128253369 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' medium none none none 1 1 4 52 6 ENST00000641912.1 unknown upstream downstream duplicates(1),mismatches(1) GCATTGCGAAAACGCTCACGATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCA...ATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|TTTTCAGATGAGGAAACTGACGGGTACCAAGCTTAAATGACTTGACGAAGCTCATAGAAGATTAGCAGGTAGTAGAATAATGACTGCTGACTCCTAATTCAGTGGATCTTCCCTGGCCACCGTTTTGTATTGAGCTGCAATGCTTCCTTGACTGTTCTCCATGCCAGATTCTTATCAATGAcCTTTCgCgTAAGAAcgtGCAAcGATTCcGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11196 DIS3::BORA ENSG00000083520.15::ENSG00000136122.18 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIS3 ENSG00000083520.15 protein_coding - - chr13:72752169-72782096:- chr13:72768867:- chr13:73326307-73356234:- chr13:73343005:- BORA ENSG00000136122.18 protein_coding + - chr13:72727749-72756198:+ chr13:72740226:- chr13:73301887-73330336:+ chr13:73314364:- chr13:72764275,chr13:72764277 chr13:72741221,chr13:72741220 NA NA chr13:73338413,chr13:73338415 chr13:73315359,chr13:73315358 NA NA sense antisense unknown CDS intron deletion/read-through/5'-5' low none Dis3-like_cold-shock_domain_2_(CSD2)(100%),PIN_domain(100%),RNB_domain(41%),Rrp44-like_cold_shock_domain(100%)| CSD2(100%),OB_Dis3(100%),PIN_4(100%),RNB(32%),Rrp44_CSD1(100%)| 0 0 4 165 13 ENST00000377767.9 unknown upstream downstream duplicates(1),mismappers(1) CATGTATTTGGGAAATGAATCACAATGCTGAAATCTTAAAAACGAAGTTTACCAAAAGTGTTATTAATTCAAAG___GCATCTCTGACaTATGCTGAAGCTCAGTTGAGAATTGATTCAGCAA...|...ATGACATGAAACAGTCCAGTGCAGTGAATTCTTATAATTCTGCATACAAGCTGGACTTTCTCATACAAAAAGCAGGGCTCATTCACCCGACACAGTTTCCAGTTCTATACCTCAATGTGGTTGATCCAGATATCTGCCTTATATAAATTCCTCCTGGTAACCACCTCCCTATGGGCCATCTACATATGGCCTACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11211 HDHD5::MIAT ENSG00000069998.12::ENSG00000225783.9 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HDHD5 ENSG00000069998.12 protein_coding - - chr22:17137511-17165287:- chr22:17159126:- chr22:17618401-17646177:- chr22:17640016:- MIAT ENSG00000225783.9 lncRNA + + chr22:26646411-26676475:+ chr22:26663316:+ chr22:27042375-27072438:+ chr22:27059280:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 111 0 188 303 ENST00000336737.8 ENST00000643270.1 upstream upstream duplicates(16),mismatches(6) CGGGCGGCGCGCGCGGCTGCGGGGCTCCAGGGCCGCCCCGCCCGCAGGTGCTATGCTGTGGGCCCCGCTCAG|TTGGAGGCATCTGTCCACCCATGTGGTTCCAGACACGTTCATGTGGCCACCATGACCCCGTCGGCATCACAGGGGTAACCAAG___AGAGCAGCAAGTTCCTGGGACAGAGGAGACAGAAGGGAATTTCCAGGTTCTTCAGGACGTTCACAACCACACTGAGAAGCATCTTTGCAGATAAGTATTTAAACTTACCAGCCCATAGCCTACCAGCCTGCCCTCTTCTGGTCTGTGCAGGAAAGTGTAGTATCC RAARAAAGLQGRPARRCYAVGPAQ|leasvhpcgsrhvhvatmtpsasqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11212 C22orf39::SULT4A1 ENSG00000242259.9::ENSG00000130540.14 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 1113 FALSE NA FALSE NA C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19397992:- chr22:19338891-19435234:- chr22:19385515:- SULT4A1 ENSG00000130540.14 protein_coding - - chr22:43824509-43862513:- chr22:43841932:- chr22:44220389-44258393:- chr22:44237812:- chr22:19397238,chr22:19397240 chr22:43842086,chr22:43842086 NA NA chr22:19384761,chr22:19384763 chr22:44237966,chr22:44237966 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF3128)(100%)|Sulfotransferase_domain(94%) DUF3128(100%),MRP-L28(100%),WD40(99%)|Sulfotransfer_1(43%),Sulfotransfer_3(100%) 26 16 26 437 63 ENST00000509549.5 ENST00000330884.9 upstream downstream duplicates(6),mismatches(17) GGGGAGATGACAAACTGATTATGGTGTGGAAGCGGGCTAC___GTACATCGGCCCCAGCACCGTGTTCGGCTCCAGTGGTAAGCTTGCCAATGTGGAGCAGTGGCGGTGTGTCTCTATCCTCCGGAATCATTCAGGCG___ATGTGATGGATGTAGCATGGTCTCCCCACGATGCCTGGCTAGCCTCATGCAGCGTGGATAACACTGTCGTCATCTGGAATGCTGTAAAGTTCCCAG|GCACCAGCTTGCTGCAGGAGGTGGTCTACTTGGTGAGCCAGGGCGCTGACCCCGATGAGATCGGCTTGATGAACATCGACGAGCAGCTCCCGGTCCTGGAGTACCCACAGCCGGGCCTGGACATCATCAAG___GAACTGACCTCTCCCCGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11213 HIRA::SULT4A1 ENSG00000100084.14::ENSG00000130540.14 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19397992:- chr22:19318221-19434973:- chr22:19385515:- SULT4A1 ENSG00000130540.14 protein_coding - - chr22:43824509-43862513:- chr22:43841932:- chr22:44220389-44258393:- chr22:44237812:- chr22:19397238,chr22:19397240 chr22:43842086,chr22:43842086 NA NA chr22:19384761,chr22:19384763 chr22:44237966,chr22:44237966 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WD_domain__G-beta_repeat(74%)|Sulfotransferase_domain(94%) DUF3128(100%),MRP-L28(100%),WD40(99%)|Sulfotransfer_1(43%),Sulfotransfer_3(100%) 26 16 26 437 63 ENST00000263208.5 ENST00000330884.9 upstream downstream duplicates(6),mismatches(17) GGGGAGATGACAAACTGATTATGGTGTGGAAGCGGGCTAC___GTACATCGGCCCCAGCACCGTGTTCGGCTCCAGTGGTAAGCTTGCCAATGTGGAGCAGTGGCGGTGTGTCTCTATCCTCCGGAATCATTCAGGCG___ATGTGATGGATGTAGCATGGTCTCCCCACGATGCCTGGCTAGCCTCATGCAGCGTGGATAACACTGTCGTCATCTGGAATGCTGTAAAGTTCCCAG|GCACCAGCTTGCTGCAGGAGGTGGTCTACTTGGTGAGCCAGGGCGCTGACCCCGATGAGATCGGCTTGATGAACATCGACGAGCAGCTCCCGGTCCTGGAGTACCCACAGCCGGGCCTGGACATCATCAAG___GAACTGACCTCTCCCCGCCT GDDKLIMVWKRATYIGPSTVFGSSGKLANVEQWRCVSILRNHSGDVMDVAWSPHDAWLASCSVDNTVVIWNAVKFP|gTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11219 GRK3::GTPBP1 ENSG00000100077.16::ENSG00000100226.16 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 1115 FALSE NA FALSE NA GRK3 ENSG00000100077.16 protein_coding + + chr22:25564675-25729294:+ chr22:25695214:+ chr22:25960642-26125261:+ chr22:26091181:+ GTPBP1 ENSG00000100226.16 protein_coding + + chr22:38705742-38738299:+ chr22:38715907:+ chr22:39101747-39134304:+ chr22:39111912:+ chr22:25699085 chr22:38714249 NA NA chr22:26095052 chr22:39110254 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(74%),Regulator_of_G_protein_signaling_domain(100%)|Elongation_factor_Tu_GTP_binding_domain(100%) PK_Tyr_Ser-Thr(69%),Pkinase(58%),RGS(100%)|GTP_EFTU(100%),GTP_EFTU_D3(100%) 4 6 6 31 164 ENST00000324198.11 ENST00000216044.10 downstream upstream duplicates(4),mismatches(3) AGCAAATATTCTCTTGGATGAACATGGACACGCAAGAATATCAGATCTTGGTCTTGCCTGCGATTTTTCCAAAAAGAAGCCTCATGCGAGTGT___TGGCACCCATGGGTACATGGCTCCCGAGGTGCTGCAGAAGGGGACGGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGCTGCATGCTTTTCAAACTTCTGAGAGG|ATGGGACTGAGTATGGGCTGAGTGAAGCTGACATGGAGGCCTCCTACGCCACAGTGAAGAGCATGGCGGAACAGATAGAGGCCGATGTCATCCTTCTGCGGGAACGGCAAGAAGCTGGGGGCCGCGTGCGTGATTACCTGGTCCGGAAACGAGTAGGAGACAATGACTTCCTGGAGGTCAG___GGTAGCAGTGGTGGGCAACGTGGATGCTGG...GGAGCgGaAaAtTGcCCGAGGtTTTcCCCGCCAGAAACTCTTCCGCCACAAACATGAAATTGAATCTGGTCGCACCAGCAGTGTGGGCAACGACATTCTGGGCTTTGACAGTGAAGGCAATGTAGTGAACAAGCCTGAC ANILLDEHGHARISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRg|wd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Beta-adrenergic receptor kinase 2 AGC GRK BARK P35626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11222 TBCCD1::ASB5 ENSG00000113838.13::ENSG00000164122.9 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBCCD1 ENSG00000113838.13 protein_coding - - chr3:186546067-186570543:- chr3:186570107:- chr3:186263856-186288332:- chr3:186287896:- ASB5 ENSG00000164122.9 protein_coding - + chr4:176213673-176277571:- chr4:176223954:+ chr4:177134824-177198722:- chr4:177145105:+ chr3:186567084,chr3:186567093 chr4:176219729,chr4:176219716 NA NA chr3:186284873,chr3:186284882 chr4:177140880,chr4:177140867 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 5 1 4 19 34 ENST00000446782.5 unknown upstream upstream none GAATGAGGGAGCAGAGGTACAGCGGCCGAATGAGCGGGAACAGTTATTCCACGACAGGTGTACATCAGACGCATTGCTTAGGCCTCTTATTTTACGTTCTCCAAGCAACTCCATAAGACAACTGTCTCGGAAAGGCTACAGTGATGACAGACCGACTTAAGTTCGGATTCGGCTTCCACCGCTTCTTAGTG|GTGATGAACAAAACAAAACAGTCACATGGTTATCACAGAACTGGAAGGCCCTAAGGAAGTGTCTCACTCTACAGATGAGAAAAGGAGGCTCAG___AGACAGAATCTTGCTCTGTCATCCAGtCTGG MTDRLKFGFGFHRFLV|vmnktkqshgyhrtgrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11223 ASB5::LPP ENSG00000164122.9::ENSG00000145012.15 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASB5 ENSG00000164122.9 protein_coding - + chr4:176213673-176277571:- chr4:176237607:+ chr4:177134824-177198722:- chr4:177158758:+ LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188406112:+ chr3:187871072-188608460:+ chr3:188123900:+ chr4:176248632,chr4:176248632 chr3:188273994,chr3:188273991 NA NA chr4:177169783,chr4:177169783 chr3:187991782,chr3:187991779 NA NA antisense sense unknown intron 5'UTR/splice-site translocation/3'-3' high none |LIM_domain(100%) |LIM(100%) 2 1 4 12 112 unknown ENST00000414139.6 downstream upstream none TCAGAGACAGAATCTTGCTCTGTCATCCAGACTGGAGGGCAGTGATGTTCTGAACATCGCTCACTGCAGCCTTCAAATCAGGCTCAAGCAATCCTCCTGCCTCAGCCTTCTGAGTCtCTGGAATAACAG___ACTTTCACAAAGGTTCCTGTGTGCTAACTTGAGATGTCTTCAACATTGAACTCTATTCAGAAACACTTGGATCAGGGCTG|ATTCCAACAATGTCTCACCCATCTTGGCTGCCACCCAAAAGCACTGGTGAGCCCCTCGGCCATGTGCCTGCACGGATGGAGACCACCCATTCCTTTGGGAACCCCAGCATTTCAGTGTCTACACAACAGCCACCCAAAAAGTTTGCCCCGGTAGTTGCTCCAAAACCTAAGTACAACCCATACAAACAACCgGGAGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-28 chr3:188688781-188688866:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 11230 UBE2L3::CPNE2 ENSG00000185651.16::ENSG00000140848.17 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1977 TRUE 763 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21567771:+ chr22:21903736-21978323:+ chr22:21922060:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57110708:+ chr16:57126495-57182281:+ chr16:57144620:+ chr22:21575256,chr22:21575254 chr16:57103450,chr16:57103445 NA NA chr22:21929545,chr22:21929543 chr16:57137362,chr16:57137357 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none Ubiquitin-conjugating_enzyme(3%)|C2_domain(100%),Copine(100%) UQ_con(25%)|C2(100%),Copine(100%) 0 38 0 4688 395 ENST00000545681.2 ENST00000290776.13 downstream upstream duplicates(10),mismatches(26),multimappers(1) AGCAGCACCAAATCCAAGATGGCGGCCAGCAGGAGGCTGATGAAG|ACTGCCAGGAACTCCTGCCACCGCCACCGGCTCCCATGGCCCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCGTGTGCAAGGTGGAGCTGTCAGTGAGTGGCCAGAACCTACTGGACCGGGATGTTACCTCCAAGTCCGACCCCTTCTGTGTCCTCTTTACAGAGAACAATGGCAGATGGATCGAG___TACGACAGGACAGAAACCGCGATCAACAACCTCAACCCCGCCTTCTCCAAGAAGTTCGTGCTTGACTACCACTTCGAGGAGGTACAGAAGCTCAAGTTCGCGCTCTTTGACCAGGACAAGTCCAGTATGCGGCTGGACGAGCATGACTTCC MAASRRLMK|tarnschrhrlpwptypvgvpqqrgqppwapsiacarwscq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11231 UBE2L3::CPNE2 ENSG00000185651.16::ENSG00000140848.17 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 1116 TRUE 1977 TRUE 763 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21567771:+ chr22:21903736-21978323:+ chr22:21922060:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57113288:+ chr16:57126495-57182281:+ chr16:57147200:+ chr22:21575256,chr22:21575254 chr16:57103450,chr16:57103445 NA NA chr22:21929545,chr22:21929543 chr16:57137362,chr16:57137357 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Ubiquitin-conjugating_enzyme(3%)|C2_domain(83%),Copine(100%) UQ_con(25%)|C2(70%),Copine(100%) 0 8 0 4688 541 ENST00000545681.2 ENST00000290776.13 downstream upstream duplicates(3),mismatches(3),multimappers(1) AGCAGCACCAAATCCAAGATGGCGGCCAGCAGGAGGCTGATGAAG|TACGACAGGACAGAAACCGCGATCAACAACCTCAACCCCGCCTTCTCCAAGAAGTTCGTGCTTGACTACCACTTCGAGGAGGTACAGAAGCTCAAGTTCGCGCTCTTTGACCAGGACAAGTCCAGTATGCGGCTGGACGAGCATGACTTCCTGGGCCAGTTCTCCTGCAGCCTGGGCACG___ATCGTCTCCAGC MAASRRLMK|YDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSMRLDEHDFLGQFSCSLGTIVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11232 UBE2L3::CPNE2 ENSG00000185651.16::ENSG00000140848.17 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1977 TRUE 763 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21568377:+ chr22:21903736-21978323:+ chr22:21922666:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57110708:+ chr16:57126495-57182281:+ chr16:57144620:+ chr22:21575256,chr22:21575254 chr16:57103450,chr16:57103445 NA NA chr22:21929545,chr22:21929543 chr16:57137362,chr16:57137357 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none Ubiquitin-conjugating_enzyme(3%)|C2_domain(100%),Copine(100%) UQ_con(26%)|C2(100%),Copine(100%) 0 4 0 39 395 ENST00000496722.1 ENST00000290776.13 downstream upstream duplicates(1),mismatches(1) GGAGGTTCGGGCTAGGAAAGAGAGAAGGAGGCgAGGCGGCCAAAGTTAGGTCAGTTTGTTGGTGGGTCGTTTGGAATTGCGCTGGGTCCTAGCAAACTGTCGCCTTGTGACTGCAGAGTCACACAGCGG|ACTGCCAGGAACTCCTGCCACCGCCACCGGCTCCCATGGCCCACATACCCAGTGGGGGTGCCCCAGCAGCGGGGGCAGCCCCCATGGGCCCCCAGTATTGCGTGTGCAAGGTGGAGCTGTCAGTGAGTGGCCAGAACCTACTGGACCGGGATGTTACCTCCAAGTCCGACCCCTTCTGTGTCCTCTTTACAGAGAACAATGGCAGATGGATCGAG___TACGACAGGACAGAAACCGCGATCAACAACCTCAACCCCGCCTTCTCCAAGAAGTTCGTGCTTGACTACCACTTCGAGGAGGTACAGAAGCTCAAGTTCGCGCTCTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11235 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)| Cmc1(27%),TraN(0%)| 3 5 3 282 29 ENST00000477739.1 ENST00000383768.7 downstream upstream mismappers(1) GCAACGGGCGGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCG...GGCCCGCCGAGATGGCGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___AAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAG___GAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGG___TTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11236 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28478814:+ chr3:28390212-28579613:+ chr3:28520305:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)|PWWP_domain(22%) Cmc1(27%),TraN(0%)|PWWP(0%) 4 2 5 282 15 ENST00000466830.6 ENST00000419130.5 downstream upstream none GGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCcGAGC...CGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|CCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAAGCATGTCTACTCTATGGATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCAAAACTACAAG___ATAAATCCGAAACACATGACAAAGTTGCTGC...GAACAGGG___TTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAGAAG MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQ|aRKV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11237 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)| 2 1 1 257 29 ENST00000466830.6 ENST00000383768.7 downstream upstream none CTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTgCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___TTGTCTGTGAG...CAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAGAAGGACATGGAGAGGAAATAAATATGGGAGAAAAG___TTATCTAAATGCAGCCCAGAAGCTCC MALDPA|dKSETHDKVAALVKKRlsv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11238 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28478814:+ chr3:28390212-28579613:+ chr3:28520305:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)|PWWP_domain(22%) Cmc1(0%)|PWWP(0%) 1 0 2 257 15 ENST00000466830.6 ENST00000419130.5 downstream upstream none GGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|CCAGAAAAGTGTcAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAAG...TCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCAAAACTACAAG___ATAAATCCGAA MALDPA|aRKVsE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11239 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241901:+ chr3:28283075-28366633:+ chr3:28283392:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)| 1 0 1 7 29 ENST00000334841.10 ENST00000383768.7 downstream upstream duplicates(1) GGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCC...GGTACCGGGGCGGGAAGCGGGGTTTGCCGAGGGGCCTCGCCCCGGGTCTCACGCCGCGGGCCATGCGGGCTGGATGCCGACCTGGGAAAG|ATAAATCCGA GTGAGSGVCRGASPRVSRRGPCGLDADLGK|inp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11240 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1978 TRUE 764 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28253765:+ chr3:28283075-28366633:+ chr3:28295256:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(15%)| 0 1 1 37 29 ENST00000418849.2 ENST00000383768.7 downstream upstream none CGCAG___AGTAAACAGTAGCACCAAACTGTCTTCAGGAGCAA|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___AAGCAGACTTCTAA...AAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAG___GAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11242 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1979 TRUE 765 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28492127:+ chr3:28390669-29809028:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)| Cmc1(27%),TraN(0%)|RRM_1(100%) 3 3 2 282 29 ENST00000418849.2 ENST00000635992.1 downstream upstream mismappers(1) GCAACGGGCGGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCG...CTTCGTCTACCCTTCCTCATTTTACTCTGTCGTTATAGCAAGAAG___AGTAAACAGTAGCACCAAACTGTCTTCAGGAGCAA___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___AAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAA...CAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGG___TTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11243 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1979 TRUE 765 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28492127:+ chr3:28390669-29809028:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)|RRM_1(100%) 2 1 1 257 29 ENST00000466830.6 ENST00000635992.1 downstream upstream none CTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTgCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___TTGTCTGTGAG...CAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAGAAGGACATGGAGAGGAAATAAATATGGGAGAAAAG___TTATCTAAATGCAGCCCAGAAGCTCC MALDPA|dksethdkvaalvkkrlsv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11244 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1979 TRUE 765 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241901:+ chr3:28283075-28366633:+ chr3:28283392:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28492127:+ chr3:28390669-29809028:+ chr3:28533618:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)|RRM_1(100%) 1 0 1 7 29 ENST00000334841.10 ENST00000635992.1 downstream upstream duplicates(1) GGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCC...GGTACCGGGGCGGGAAGCGGGGTTTGCCGAGGGGCCTCGCCCCGGGTCTCACGCCGCGGGCCATGCGGGCTGGATGCCGACCTGGGAAAG|ATAAATCCGA GTGAGSGVCRGASPRVSRRGPCGLDADLGK|INP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11251 DNAJB11::HRG-AS1 ENSG00000090520.12::ENSG00000197099.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1982 TRUE 766 DNAJB11 ENSG00000090520.12 protein_coding + + chr3:186567403-186585800:+ chr3:186577800:+ chr3:186285192-186303589:+ chr3:186295589:+ HRG-AS1 ENSG00000197099.8 lncRNA - - chr3:186579476-186772986:- chr3:186642128:- chr3:186297265-186490775:- chr3:186359917:- chr3:186581068,chr3:186581069 chr3:186706183,chr3:186706182 NA NA chr3:186298857,chr3:186298858 chr3:186423972,chr3:186423971 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none DnaJ_C_terminal_domain(9%),DnaJ_domain(100%)| DnaJ(100%),DnaJ_C(0%)| 3 1 0 1459 13 ENST00000439351.5 ENST00000625386.2 downstream downstream duplicates(1) TCCACAAGCCCAGGAGAAATTCCAGGATCTGGGTGCTGCTTATGAG___GTTCTGTCAGATAGTGAGAAACGGAAACAGTACGATACTTATGGTGAAGAAGGAT...ACCCCTCGTCAGCAAGACAGAAATATTCCAAGAGGAAGTGATATTATTGTAGATCTAGAAGTCACTTTGGAAGAAGTATATGCAGGAAATTTTGTGGAA|CTTGATGCAGATGAGCAGGTAACCATGGAAGTCGTGAGCTGAGGCTGCAGAGTCTAGAGCCAGAGTGTGGA...ACCCCACGTCCAGAATATTCACACCTCAGGTCTTTTTCTCACAATTGAAACACTGGTTCAGAGCCTAACGGAAGGTCTTGGAGGTAAAAACACAACTTGGG TPRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVE|ldadeqvtmevvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11253 DNAJB11::HRG-AS1 ENSG00000090520.12::ENSG00000197099.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1982 TRUE 766 DNAJB11 ENSG00000090520.12 protein_coding + + chr3:186567403-186585800:+ chr3:186577800:+ chr3:186285192-186303589:+ chr3:186295589:+ HRG-AS1 ENSG00000197099.8 lncRNA - - chr3:186579476-186772986:- chr3:186651871:- chr3:186297265-186490775:- chr3:186369660:- chr3:186581068,chr3:186581069 chr3:186706183,chr3:186706182 NA NA chr3:186298857,chr3:186298858 chr3:186423972,chr3:186423971 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none DnaJ_C_terminal_domain(9%),DnaJ_domain(100%)| DnaJ(100%),DnaJ_C(0%)| 1 0 0 1459 4 ENST00000439351.5 ENST00000628253.2 downstream downstream none CCGG___ACGAGATTTCTATAAGATCTTGGGGGTGCCTCGAAGTGCCTCTATAAAGGATATTAAAAAGGCCTATAGGAAACTAGCCCTGCAGCTTCATCCCGAC...AGAAGTATATGCAGGAAATTTTGTGGAA|GGATCTGAATGATGCAGTGTCGCAATCCCATTTTATAAATGAGGCAACCAAAACTCGAACAG___GACCATATTGC EVYAGNFVE|gse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11254 DNAJB11::HRG-AS1 ENSG00000090520.12::ENSG00000197099.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 1982 TRUE 766 DNAJB11 ENSG00000090520.12 protein_coding + + chr3:186567403-186585800:+ chr3:186575937:+ chr3:186285192-186303589:+ chr3:186293726:+ HRG-AS1 ENSG00000197099.8 lncRNA - - chr3:186579476-186772986:- chr3:186642128:- chr3:186297265-186490775:- chr3:186359917:- chr3:186581068,chr3:186581069 chr3:186706183,chr3:186706182 NA NA chr3:186298857,chr3:186298858 chr3:186423972,chr3:186423971 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none DnaJ_domain(100%)| DnaJ(100%)| 1 0 0 1699 13 ENST00000439351.5 ENST00000625386.2 downstream downstream mismatches(1) GCTGTCTCTGCGGACCAgGGAGACCCCCGCGCCCCCCCGGTGTGAGGCGGCCTCACAGGGCCGGGgGGGCTGGCGAGCCGACGCGGgGGCGGAGagGGC...GATTTCTATAAGATCTTGGGGGTGCCTCGAAGTGCCTCTATAAAGGATATTAAAAAGGCCTATAGGAAACTAGCCCTGCAGCTTCATCCCGACCGGAACCC...ATCAGAGCTCCCATGGAGACATTTTTTCACA|CTTGATGCAGATGAGCAGGTAACCATGGAAGTCGTGAGCTGAGGCTGCAGAGTCTAGAGCCAGAGTGTGGAATAAAC QSSHGDIFSh|lmqmsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11291 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1117 TRUE 1988 TRUE 767 NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171391799:+ chr5:170814120-170838814:+ chr5:170818803:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman Nucleoplasmin/nucleophosmin_domain(94%)|Protein_kinase_domain(100%) Nucleoplasmin(19%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 81 119 149 5298 2505 ENST00000517671.5 ENST00000389048.8 downstream downstream duplicates(25),low_entropy(2),mismatches(36),multimappers(25) TGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACG___GTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCG___GGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAA HIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLV|vYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 11292 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1988 TRUE 767 NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171391799:+ chr5:170814120-170838814:+ chr5:170818803:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29224678:- chr2:29415640-30144452:- chr2:29447544:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high Mitelman Nucleoplasmin/nucleophosmin_domain(94%)|Protein_kinase_domain(100%) Nucleoplasmin(19%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 13 8 158 5298 157 ENST00000517671.5 ENST00000431873.6 downstream downstream duplicates(3),mismatches(13),multimappers(2) AGTTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACG___GTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGGGCCAGTGCATATTAGTGGACAGCACTTAGTAG|GTAACCCTAATCTGATCACGGTCGGTCCATTGCATAGAGGAGGGAACTGAGCACATAGCGGGTGACTCATTTGCCCTGGCCCATGTGTTGGGGGGCTGGGCTTTACACACAGAATCTACCCACTGAATCACAATTTTGTTCTGGCTTCCATGGAGTTTGCCTTCCAGAACATCCTCACATGTAGGAGTGATAATGGTCACTCACATTGGTAGAGCTCTTTAGGATTTTTCAAAACCATTTTATGTTGGTGAATTCATTTCATTGACAACCCTAGAGGGTGGGGAGTGGCAGcGGTTAGGGAAACAGG LHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLV|gnpnlitvgplhrggn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 11293 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1988 TRUE 767 NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171391424:+ chr5:170814120-170838814:+ chr5:170818428:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium Mitelman Nucleoplasmin/nucleophosmin_domain(65%)|Protein_kinase_domain(100%) Nucleoplasmin(17%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 0 76 4728 2505 ENST00000517671.5 ENST00000389048.8 downstream downstream duplicates(2),mismatches(6) GAACTATCTTTTCG___GTTGTGAACTAAAGGCCGACAAAGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACG___GTCAGTTTAGGGGCTGGTGCAAAGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCG___GGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAACGACCCAAGCCCCCTGCAAGTGGCT NYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPT|ctagstrsckpcrwscralsts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 11294 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1988 TRUE 767 NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171388006:+ chr5:170814120-170838814:+ chr5:170815010:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium Mitelman Nucleoplasmin/nucleophosmin_domain(2%)|Protein_kinase_domain(100%) Nucleoplasmin(0%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 21 4439 2505 ENST00000676613.1 ENST00000389048.8 downstream downstream mismatches(3) TCCGTCCTGCGCGGTTGTTCTCTGGAGCAGCGTTCTTTTATCTCCGTCCGCCTTCTCTCCTACCTAAGTGCGTGCCGCCACCCGATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCG___GGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAACGACCCAAGCCCCCTGCAAGTGGCT MEDSMDMDMSPLRPQNYLF|vYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 11295 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1988 TRUE 767 NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171391424:+ chr5:170814120-170838814:+ chr5:170818428:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29197676:- chr2:29415640-30144452:- chr2:29420542:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low Mitelman Nucleoplasmin/nucleophosmin_domain(65%)|Protein_kinase_domain(26%) Nucleoplasmin(17%)|PK_Tyr_Ser-Thr(3%),Pkinase(3%) 1 0 0 4728 616 ENST00000517671.5 ENST00000389048.8 downstream downstream none GCTGGTGCAAAGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAAATGTCTGTACAGCCAACG|GTCCTTTGGAGTGCTGCTATGGGAAATCTTTTCTCTTGGATATATGCCA AGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPT|vlwsaamgnlfswiya NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 11296 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1118 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145947619:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23104144:+ chr10:23384508-23410942:+ chr10:23393073:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Limb_expression_1(29%)|SelR_domain(100%) LIX1(47%)|SelR(100%) 18 9 25 167 1110 ENST00000604000.4 ENST00000376510.8 upstream upstream duplicates(1),mismatches(3) GTGGTGAGGAGCTTCGCCAAGCACACGCAGGGCTATGGCCGAG___TGAATGTGGTGGAGGCACTTCAGGAATTCTGGCAGATGAAGCAGTCCCGTGGTGCTGACTTAAAGAATGGGGCTCTAGTGGTTTATGAGATGGTTCCCTCCAACAGCCCTCCTTATGTCTGCTATGTCACCCTGCCTGGGGGAAGCTGCTTTGGGAGTTTCCAG|GGTCTCTTGCAACGTGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCGGAGCAGTTCTACGTCACAAGAGAAAAGGGAACGGAACCG___CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCC VVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ|gllqrvscllprvsgkrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11297 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1119 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145957636:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23104144:+ chr10:23384508-23410942:+ chr10:23393073:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Limb_expression_1(7%)|SelR_domain(100%) LIX1(0%)|SelR(100%) 5 14 9 133 1110 ENST00000604000.4 ENST00000376510.8 upstream upstream duplicates(2),mismatches(1) CGCACCGCCCCCGCCGCCGCTGCTCCTGTCTGGGGCCCCAGGACTACCCCTGCCCCCCGGCGCCGCCGGCAGCCCGGCAGTGCTGCGAGAGGCCGTGGAGGCCGTGGTGAGGAGCTTCGCCAAGCACACGCAGGGCTATGGCCGAG|GGTCTCTTGCAACGTGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCGGAGCAGTTCTACGTCACAAGAGAAAAGGGAACGGAACCG___CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCCACTCTTCAG___TTCTGAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGATACCTCGTTAGGATCAGCTCGCACAGAGGTTGTCTGCAAG APPPPPLLLSGAPGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGR|gSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11298 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1120 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145947619:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23110242:+ chr10:23384508-23410942:+ chr10:23399171:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Limb_expression_1(29%)|SelR_domain(83%) LIX1(47%)|SelR(63%) 6 4 7 167 1948 ENST00000604000.4 ENST00000376510.8 upstream upstream duplicates(1),mismatches(1) CACGCAGGGCTATGGCCGAG___TGAATGTGGTGGAGGCACTTCAGGAATTCTGGCAGATGAAGCAGTCCCGTGGTGCTGACTTAAAGAATGGGGCTCTAGTGGTTTATGAGATGGTTCCCTCCAACAGCCCTCCTTATGTCTGCTATGTCACCCTGCCTGGGGGAAGCTGCTTTGGGAGTTTCCAG|CCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCCACTCTTCAG___TTCTGAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAAA TQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQ|PFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11299 EML2::CCDC26 ENSG00000125746.18::ENSG00000229140.12 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1990 TRUE 769 EML2 ENSG00000125746.18 protein_coding - - chr19:45606994-45645602:- chr19:45613541:- chr19:46110252-46148860:- chr19:46116799:- CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128670187:- chr8:129646445-130696016:- chr8:129682433:- chr19:45612964,chr19:45612968 chr8:128670562,chr8:128670563 NA NA chr19:46116222,chr19:46116226 chr8:129682808,chr8:129682809 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none HELP_motif(100%),WD_domain__G-beta_repeat(82%)| HELP(100%),WD40(98%)| 12 16 17 1892 74 ENST00000587152.6 unknown upstream downstream duplicates(2),low_entropy(4),mismatches(3) GCCACAGCTACTTGTGTCCTAGGGTTTGGGGTGTTTG___GGATCTGGTCTGAGGGGGCGGACGGCACTGATATCAACGCTGTGGCCCGCTCTCATGATGGGAAGTTGCTGGCTTCAGCTGATGACTTTGGCAAAGTTCACCTGTTTAGCTACCCCTGCTGTCAGCCTCGA|AATAGGAAGAAGAAGGGCAAAAGAAGATGGGTGAAGACTGGATGAAAAGATTCTGGAGACTCCATGGAAAAGATGTGGTAGCCTGCATTAGGGTCACAGCAATGAAGATGTAAATATGTGATTGAATTTTAGAAAATATTTAGAAGAAGCACTCTGAAGATTTAAGTATGAATTGGATATGCATCTGAGGACAAAGGAGATGTCCAGGATGACTAAGG...AATAGCCATAAACCAATGGGATGTTGGAGATGTCA?TTATTAAGAT?AGCACTAGAGATGTAGCATATTTGGG ATATCVLGFGVFGIWSEGADGTDINAVARSHDGKLLASADDFGKVHLFSYPCCQPR|nrkkkgkrrwvktg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-330 chr19:45638994-45639087:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11300 EML2::CCDC26 ENSG00000125746.18::ENSG00000229140.12 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1990 TRUE 769 EML2 ENSG00000125746.18 protein_coding - - chr19:45606994-45645602:- chr19:45613541:- chr19:46110252-46148860:- chr19:46116799:- CCDC26 ENSG00000229140.12 lncRNA - + chr8:128634199-129683770:- chr8:128671357:+ chr8:129646445-130696016:- chr8:129683603:+ chr19:45612964,chr19:45612964,chr19:45612964,chr19:45612964,chr19:45612964,chr19:45612964,chr19:45612964 chr8:128670482,chr8:128670551,chr8:128670537,chr8:128670518,chr8:128670553,chr8:128670501,chr8:128670523 NA NA chr19:46116222,chr19:46116222,chr19:46116222,chr19:46116222,chr19:46116222,chr19:46116222,chr19:46116222 chr8:129682728,chr8:129682797,chr8:129682783,chr8:129682764,chr8:129682799,chr8:129682747,chr8:129682769 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none HELP_motif(100%),WD_domain__G-beta_repeat(82%)| HELP(100%),WD40(98%)| 11 8 15 1892 63 ENST00000587152.6 unknown upstream upstream mismatches(1) GCTACCTGTAAGCAGATCACCAGTGCGGATGCTGTGAGGAACATGGAATGGGCCACAGCTACTTGTGTCCTAGGGTTTGGGGTGTTTG___GGATCTGGTCTGAGGGGGCGGACGGCACTGATATCAACGCTGTGGCCCGCTCTCATGATGGGAAGTTGCTGGCTTCAGCTGATGACTTTGGCAAAGTTCACCTGTTTAGCTACCCCTGCTGTCAGCCTCGA|GGGCCGTGACGAGGACCCAAAGAAGACCGCTAGATTAGGCAAAAGTCAGCACATGTGGCTTCTTCCTCGCACCCCCACAGAAAAGAGGGCCAGGTGCCTTTCTAGGAAATACAATTTTCTGAATTGTTCTTTTGTCATGTATTACTAAATGGTGCCAATAGCCACACATAATTTGAAGAAGGAAGGTTATAAATAACCACTCATTT ATCKQITSADAVRNMEWATATCVLGFGVFGIWSEGADGTDINAVARSHDGKLLASADDFGKVHLFSYPCCQPR|gp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-330 chr19:45638994-45639087:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11301 ARPC1B::KPNA7 ENSG00000130429.16::ENSG00000185467.8 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1121 FALSE NA FALSE NA ARPC1B ENSG00000130429.16 protein_coding + + chr7:99374249-99394816:+ chr7:99392876:+ chr7:98971872-98992439:+ chr7:98990499:+ KPNA7 ENSG00000185467.8 protein_coding - - chr7:99173572-99250075:- chr7:99195338:- chr7:98771195-98847698:- chr7:98792961:- chr7:99393821,chr7:99393748,chr7:99393821,chr7:99393749 chr7:99201000,chr7:99200647,chr7:99200973,chr7:99200647 NA NA chr7:98991444,chr7:98991371,chr7:98991444,chr7:98991372 chr7:98798623,chr7:98798270,chr7:98798596,chr7:98798270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none WD_domain__G-beta_repeat(100%)|Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%) WD40(100%)|Arm(100%),Arm_3(100%),HEAT_EZ(100%) 13 14 15 2311 34 ENST00000414376.6 ENST00000681060.1 downstream downstream duplicates(1),mismatches(13) GGGATGCTGAGCTTCGGCGGGCGGCTGGACGTTCCTAAGCAGAGCTCGCAGCGTGGCTTGACGGCCCGCGAGCGCTTCCAGAACCTGGACAAGAAGGCGAGCTCCGAGGGTGGCACGGCTGCGGGCGCGGGCCTAGACTCGCTGCACAAGAACAGCGTCAG|GAAAATGCTATCCCAGGAAAAGAACCCCCCTCTGAAACTGGTCATTGAAGCGGGCCTCATTCCCAGGATGGTGGAGTTCCTGAAGTCATCACTTTACCCCTGCTTGCAGTTTGAGGCTGCCTGGGCCCTGACCAACATCGCTTCAGGGACTTCGGAGCAGACTCGTGCCGTGGTAGAAGGGGGAGCCATCCAGCCCTTGATTGAGCTCCTGTCTTCCTCCAACGTGGCTGTGTGTGAACAGGCAGTGTGGGCTCTTGGTAATATAGCCG___GTGATGGCCCAGAGT GMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVr|KMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11302 PIP4K2A::NEBL ENSG00000150867.14::ENSG00000078114.19 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE TRUE 1122 TRUE 1991 TRUE 770 PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22714183:- chr10:22823783-23003507:- chr10:23003112:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20828634:- chr10:21068902-21581940:- chr10:21117563:- chr10:22644549,chr10:22644549,chr10:22644070,chr10:22646006,chr10:22645702,chr10:22646008,chr10:22644485,chr10:22646013 chr10:20829648,chr10:20829652,chr10:20829885,chr10:20830041,chr10:20829846,chr10:20830040,chr10:20829197,chr10:20830040 NA NA chr10:22933478,chr10:22933478,chr10:22932999,chr10:22934935,chr10:22934631,chr10:22934937,chr10:22933414,chr10:22934942 chr10:21118577,chr10:21118581,chr10:21118814,chr10:21118970,chr10:21118775,chr10:21118969,chr10:21118126,chr10:21118969 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Nebulin_repeat(42%),Variant_SH3_domain(100%) |Nebulin(10%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 10 14 17 295 46 ENST00000376573.9 ENST00000377122.9 upstream downstream duplicates(2) GGCGGCCATGGCGACCCCCGGCAACCTAGGGTCCTCTGTCCTGGCGAGCAAGACCAAGACCAAGAAGAAGCACTTCGTAGCGCAGAAAGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCCTCATGTGGGGGGTAAACCACTCG|AGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG___GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGC MATPGNLGSSVLASKTKTKKKHFVAQKVKLFRASDPLLSVLMWGVNHS|RKYKDEAEKMLSNYSTIADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDSPEIERVKKNQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11303 PIP4K2A::NEBL ENSG00000150867.14::ENSG00000078114.19 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1991 TRUE 770 PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22646219:- chr10:22823783-23003507:- chr10:22935148:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20828634:- chr10:21068902-21581940:- chr10:21117563:- chr10:22644549,chr10:22644549,chr10:22644070,chr10:22646006,chr10:22645702,chr10:22646008,chr10:22644485,chr10:22646013 chr10:20829648,chr10:20829652,chr10:20829885,chr10:20830041,chr10:20829846,chr10:20830040,chr10:20829197,chr10:20830040 NA NA chr10:22933478,chr10:22933478,chr10:22932999,chr10:22934935,chr10:22934631,chr10:22934937,chr10:22933414,chr10:22934942 chr10:21118577,chr10:21118581,chr10:21118814,chr10:21118970,chr10:21118775,chr10:21118969,chr10:21118126,chr10:21118969 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Nebulin_repeat(42%),Variant_SH3_domain(100%) |Nebulin(10%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 1 17 15 46 ENST00000376573.9 ENST00000377122.9 upstream downstream duplicates(2) CTCGGGAGCACGGCGGTGGAGGGGACATAGGAGGCGGCCATGGCGACCCCCGGCAACCTAGGGTCCTCTGTCCTGGCGAGCAAGACCAAGACCAAGAAGAA...GCCAACTTTAGGGACAAGCAATGTCTTCATCGAGAGGCACATCACATCCCCAAAG|AGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCG___GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11304 PIP4K2A::NEBL ENSG00000150867.14::ENSG00000078114.19 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 1991 TRUE 770 PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22714183:- chr10:22823783-23003507:- chr10:23003112:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20826539:- chr10:21068902-21581940:- chr10:21115468:- chr10:22644549,chr10:22644549,chr10:22644070,chr10:22646006,chr10:22645702,chr10:22646008,chr10:22644485,chr10:22646013 chr10:20829648,chr10:20829652,chr10:20829885,chr10:20830041,chr10:20829846,chr10:20830040,chr10:20829197,chr10:20830040 NA NA chr10:22933478,chr10:22933478,chr10:22932999,chr10:22934935,chr10:22934631,chr10:22934937,chr10:22933414,chr10:22934942 chr10:21118577,chr10:21118581,chr10:21118814,chr10:21118970,chr10:21118775,chr10:21118969,chr10:21118126,chr10:21118969 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Nebulin_repeat(35%),Variant_SH3_domain(100%) |Nebulin(9%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 7 295 107 ENST00000376573.9 ENST00000377122.9 upstream downstream none GCGGAGCGCGGCGCGCCGGGGCCGCCGCCGGGGGGATGCGGCTGCCTCCCCGGGCCGGGGTGgAGAGAGGGCGGGTCCCCGGCCTCGGGAGCACGGCGGTG...GACATAGGAGGCGGCCATGGCGACCCCCGGCAACCTAGGGTCCTCTGTCCTGGCGAGCAAGACCAAGACCAAGAAGAAGCACTTCGTAGCGCAGAAAGTGAAGCTGTTTCGGGCCAGCGACCCGCTGCTCAGCGTCCTCATGTGGGGGGTAAACCACTCG|GTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCA___GTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAAT___CTCC...AGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGCAAGTCGTTTCTGTTTCCTTTTATATTTTCTCAAACATAACATATTTTTATTTAAAAAT MATPGNLGSSVLASKTKTKKKHFVAQKVKLFRASDPLLSVLMWGVNHS|VFYKKEVGAGTAVKDSPEIERVKKNQQNISSVKYKEEIKHATAISDPPELKRVKENQKNISNL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11305 PIP4K2A::NEBL ENSG00000150867.14::ENSG00000078114.19 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE FALSE FALSE NA TRUE 1991 TRUE 770 PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22644553:- chr10:22823783-23003507:- chr10:22933482:- NEBL ENSG00000078114.19 protein_coding - + chr10:20779973-21293011:- chr10:20829607:+ chr10:21068902-21581940:- chr10:21118536:+ NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/5'-5' medium none none none 2 2 2 2 2 unknown unknown upstream upstream none CGGAGAGAAAATGTTAAAAATGAACAAAGTAAGTTGTCAaGTCAGGTGCTACCAAGTGCTAGGGAAGGAGATTAGAGTGGTGGGTGCCATCTGGATAGGGTGGTGAGGGGAGCCCCATCTGCTAAGGTGGCATTTGAGAGGAGACTTGAGGTGAG|AGAAAGGTAACTACTATTCATGTTGAAATGCACCAGGCTTCATTACACCCTCGTAAGTATCCCAATTGTATTTC...TCTGACAGCTCAGGCACCTTCACTCTCAATACTTTTACTTTCAGGTGTATATATCATGGTTGTAATACTATATTTACATGATTATTAGATTTATCTGTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11306 NEBL::PIP4K2A ENSG00000078114.19::ENSG00000150867.14 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20831112:- chr10:21068902-21581940:- chr10:21120041:- PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22645568:- chr10:22823783-23003507:- chr10:22934497:- chr10:20829425,chr10:20829423 chr10:22646080,chr10:22646080 NA NA chr10:21118354,chr10:21118352 chr10:22935009,chr10:22935009 NA NA sense sense unknown intron intron duplication low none LIM_domain(100%),Nebulin_repeat(57%)|Phosphatidylinositol-4-phosphate_5-Kinase(100%) LIM(100%),Nebulin(18%)|PIP5K(100%) 0 0 5 214 96 ENST00000498424.2 unknown upstream downstream none GGACTTAGAAAATGAAATTAAAGGGAAAGGAATGCAAGTGAGCATGGATATCCCAGATATCCTTCGAGCCAAGAGGACATCTGAAATCTATAGCCAGGTTGGTCAcGAATGAAGATGCTCAGAATCGTGTATTCCAATGTCATGTTGCCATGTGCTTTGTATGTCTCTATGAATGATATCT...|...TTtTTTTTTTTTTTTTTTTAAAGAAATAGAATCTTTCTCTGTTACCCAGAACTGGAGCACAGTGGTGCAATCGTATCTCATTGCAACCTGAAACTCCCAGGCTCAAGTGATGCTTCCATCTCAGCCTCCCGAGTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11307 ENSG00000284292::KPNA7 ENSG00000284292.1::ENSG00000185467.8 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99392876:+ chr7:98923502-98992276:+ chr7:98990499:+ KPNA7 ENSG00000185467.8 protein_coding - - chr7:99173572-99250075:- chr7:99195338:- chr7:98771195-98847698:- chr7:98792961:- chr7:99393821,chr7:99393748,chr7:99393821,chr7:99393749 chr7:99201000,chr7:99200647,chr7:99200973,chr7:99200647 NA NA chr7:98991444,chr7:98991371,chr7:98991444,chr7:98991372 chr7:98798623,chr7:98798270,chr7:98798596,chr7:98798270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none WD_domain__G-beta_repeat(100%)|Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%) WD40(100%)|Arm(100%),Arm_3(100%),HEAT_EZ(100%) 11 14 12 2311 34 ENST00000638617.1 ENST00000681060.1 downstream downstream duplicates(1),mismatches(12) GTTCACCTATGACGCCGCCGCGGGGATGCTGAGCTTCGGCGGGCGGCTGGACGTTCCTAAGCAGAGCTCGCAGCGTGGCTTGACGGCCCGCGAGCGCTTCCAGAACCTGGACAAGAAGGCGAGCTCCGAGGGTGGCACGGCTGCGGGCGCGGGCCTAGACTCGCTGCACAAGAACAGCGTCAG|GAAAATGCTATCCCAGGAAAAGAACCCCCCTCTGAAACTGGTCATTGAAGCGGGCCTCATTCCCAGGATGGTGGAGTTCCTGAAGTCATCACTTTACCCCTGCTTGCAGTTTGAGGCTGCCTGGGCCCTGACCAACATCGCTTCAGGGACTTCGGAGCAGACTCGTGCCGTGGTAGAAGGGGGAGCCATCCAGCCCTTGATTGAGCTCCTGTCTTCCTCCAACGTGGCTGTGTGTGAACAGGCAGTGTGGGCTCTTGGTAATATAGCCG___GTGATGGCCCAGAGTTCAGAGATAACGTCATCACAAGCAATGCCATCCCACATCTCCTAGCCTTGATTTCACCCACCCTGCCG___ATCACATTTCTGCGGAACA FTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVr|KMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALISPTLPITFLRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11335 ANTXR2::PLAC8 ENSG00000163297.18::ENSG00000145287.11 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANTXR2 ENSG00000163297.18 protein_coding - - chr4:79901146-80125454:- chr4:79977621:- chr4:80822300-81046608:- chr4:80898775:- PLAC8 ENSG00000145287.11 protein_coding - + chr4:83090048-83137075:- chr4:83105865:+ chr4:84011201-84058228:- chr4:84027018:+ chr4:79957443,chr4:79951648 chr4:83098412,chr4:83099564 NA NA chr4:80878597,chr4:80872802 chr4:84019565,chr4:84020717 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Anthrax_receptor_C-terminus_region(87%),Anthrax_receptor_extracellular_domain(100%),von_Willebrand_factor_type_A_domain(100%)| Ant_C(0%),Anth_Ig(100%),VWA(100%),VWA_2(100%)| 31 35 36 604 82 ENST00000403729.7 unknown upstream upstream duplicates(3),mismatches(6) GAAGAAACAGAGGAACCCATCAGGCCTAGACCACCTCGACCCAAACCCACACACCAGCCTCCTCAGACAAAATGGTACACCCCAATTAAG___GGTCGTCTTGATGCTCTCTGGGCTTTGTTGAGGCGGCAGTATGACCGGGTTTCTTTGATGCGACCTCAGGAAGGAGATGAG|ATGTTGAACTGGTGCCCTGAGAAGCTTAAGTCGTCACCCCAGACAATGAGAGTGAAAAAACaAACACAATTGTTTCATTCCCTAG___AGTACTATGTGGACCAAGACAAGCAAATAGACTTCAGAGCAAGTTTTCTGCAG___AGACAGCTTTCTCCATGTTGCC EETEEPIRPRPPRPKPTHQPPQTKWYTPIKGRLDALWALLRRQYDRVSLMRPQEGDE|mlnwcpeklksspqtmrvkkqtqlfhsleyyvdqdkqidfrasflqrqlspcc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11336 SACS::PRKACB ENSG00000151835.17::ENSG00000142875.21 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SACS ENSG00000151835.17 protein_coding - - chr13:23288689-23433763:- chr13:23433615:- chr13:23862828-24007902:- chr13:24007754:- PRKACB ENSG00000142875.21 protein_coding + - chr1:84078062-84238498:+ chr1:84086606:- chr1:84543745-84704181:+ chr1:84552289:- chr13:23431829,chr13:23431831 chr1:84095377,chr1:84095376 NA NA chr13:24005968,chr13:24005970 chr1:84561060,chr1:84561059 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 13 57 3 45 83 ENST00000683210.1 unknown upstream downstream duplicates(2),mismatches(2) CCTGGACCCAGTGCGGCTGCGGGACAGTCACGCTGGGAACTGCTGATGGCACTGGAGGAAAACAAAGGCCGAGAGACCCTGATGCCCACAGCCCCCA|CAGCAAGAAAGAGAAATGCAGGTGGCAGAAGAGCCAGGCACGAGGCTTCAGATCGGAAGGGACCAGAGATGAGGACCAAGGTGTGGCTGCCTGACCAGGAGTGCTGTGGGCTGGCCTGGGCTCTCTCTATGCATCTTGAGAGAACTGCCACAGGCCCTAGAGGGAGGGGACGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11337 SPAG7::CAMTA2 ENSG00000091640.8::ENSG00000108509.21 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE TRUE 1125 TRUE 1997 TRUE 771 SPAG7 ENSG00000091640.8 protein_coding - - chr17:4959226-4967817:- chr17:4967720:- chr17:4862521-4871112:- chr17:4871015:- CAMTA2 ENSG00000108509.21 protein_coding - - chr17:4967992-4987675:- chr17:4983043:- chr17:4871287-4890970:- chr17:4886338:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |CG-1_domain(93%),IPT/TIG_domain(100%) |CG-1(30%),TIG(100%) 23 31 14 1067 204 ENST00000206020.8 ENST00000348066.8 upstream downstream duplicates(4),inconsistently_clipped(2),low_entropy(1),mismatches(2) CGGGGCGGGGCCTAGGCCAGCTGGAGGCCGCCATGCACCGCGGGCCTGGGATCTGCGCCCAGGCCAGGCGGGCCCAGGGTTTTCCGCCTCCGACGTGTTTCCGGCCTTAAAGGCATTCCGCCCTTCCCTTTAAGACGCACCGCCCCCTCTCAGTCACTCCCAAGATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAGCCACCCAGCCTCGGTGACCAGGAGACTCGGCGCAAGGCCCGAG|GAGATTGCATCCTACCTGATCACCTTTGAGAAGCATGATGAGTGGCTGTCTTGTGCCCCAAAGACAAG___GCCTCAGAATGGCTCCATCATCCTCTACAATCGCAAGAAGGTGAAATATCGGAAGGATGGTTACCTCTGGAAGAAGCGGAAGGATGGGAAGACCACCCGAGAGGACCACATGAAGCTGAAGGTCCAGGGCATGGAG___TGTCTCTATGGCTGCTACGTTCACTCTTCCATCGTCCCCACATTCCATCGGCGCTGCTACTGGCTGCTCCAG___AACCCTGACATCGTCCT MADLLGSILSSMEKPPSLGDQETRRKAR|gdcilpdhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6864,hsa-mir-6865 chr17:4969702-4969771:-,chr17:4970086-4970150:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma LUNG,BREAST no_match 4871015,4871015 TRUE,TRUE 4886338,4886338 TRUE,TRUE YES,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11338 SPAG7::CAMTA2 ENSG00000091640.8::ENSG00000108509.21 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA TRUE 1997 TRUE 771 SPAG7 ENSG00000091640.8 protein_coding - - chr17:4959226-4967817:- chr17:4966401:- chr17:4862521-4871112:- chr17:4869696:- CAMTA2 ENSG00000108509.21 protein_coding - - chr17:4967992-4987675:- chr17:4983043:- chr17:4871287-4890970:- chr17:4886338:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |CG-1_domain(93%),IPT/TIG_domain(100%) |CG-1(30%),TIG(100%) 1 0 15 50 204 ENST00000573366.5 ENST00000574606.2 upstream downstream duplicates(1),mismatches(2) ATGGGGAACTGGAATTCTCTAATGCTCCGATGACTGTCTAAGTGGGGGATCACCCGGCATTGACAGACTGGGAAGCTTAAATGAGTCACTCGCCTGAGGTCACATGGTTAGTTTG|GAGATTGCATCCTACCTGATCACCTTTGAGAAGCATGATGAGTGGCTGTCTTGTGCCCCAAAGACAAG___GCCTCAGAATGGCTCCATCATCCTCTACAATCGCAAGAAGGTGAAATATCGGAAGGATGGTTACCTCTGGAAGAAGCGGAAGGATGGGAAGACCACCCGAGAGGACCACATGAAGCTGAAGGTCCAGGGCATGGAG___CgGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6864,hsa-mir-6865 chr17:4969702-4969771:-,chr17:4970086-4970150:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma LUNG,BREAST no_match 4871015,4871015 FALSE,FALSE 4886338,4886338 TRUE,TRUE YES,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11342 IL4R::KATNIP ENSG00000077238.14::ENSG00000047578.14 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1126 TRUE 1998 TRUE 772 IL4R ENSG00000077238.14 protein_coding + + chr16:27313668-27364778:+ chr16:27355907:+ chr16:27324989-27376099:+ chr16:27367228:+ KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27677729:+ chr16:27561454-27791665:+ chr16:27689050:+ chr16:27356078,chr16:27356076 chr16:27658967,chr16:27658962 NA NA chr16:27367399,chr16:27367397 chr16:27670288,chr16:27670283 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Interleukin-4_receptor_alpha_chain__N-terminal(100%)|Domain_of_unknown_function_(DUF4457)(100%) IL4Ra_N(100%)|DUF4457(100%) 6 7 17 31 69 ENST00000543915.6 ENST00000261588.10 downstream upstream mismatches(3) GCAGAT___TTCAGAATCTATAACGTGACCTACCTAGAACCCTCCCTCCGCATCGCAGCCAGCACCCTGAAGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTGGGCTCAGTGCTATAACACCACCTGGAGTGAGTGGAGCCCCAGCACCAAGTGGCACAACT___CCTACAGGGAGCCCTTCGAGCAGCACCTCCTGCTGGGCGTCAGCGTTTCCTGCATTGTCATCCTGGCCGTCTGCCTGTTGTGCTATGTCAGCATCACCAA|GAGCTGAGAAGAAGCCTGGAACTTAGTGTAAATCTACAAAGGAAACAAAAGGATTGTTCCAGCGATGAGTATGACTCTATTGAGGAAGACATACTCTCTGAGCCTGAGCCAGAGGACCCGGCACTGGTGGGCCATCCCAGACATGACCGCCCTCCTTCCAGTGGCGACTGGACTCAGAAAGATGTTCACGGGGAACAGGAGACAGAAGGACGCTCTTCTCC ADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQCYNTTWSEWSPSTKWHNSYREPFEQHLLLGVSVSCIVILAVCLLCYVSITk|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11343 IL4R::KATNIP ENSG00000077238.14::ENSG00000047578.14 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1127 TRUE 1998 TRUE 772 IL4R ENSG00000077238.14 protein_coding + + chr16:27313668-27364778:+ chr16:27352696:+ chr16:27324989-27376099:+ chr16:27364017:+ KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27677729:+ chr16:27561454-27791665:+ chr16:27689050:+ chr16:27356078,chr16:27356076 chr16:27658967,chr16:27658962 NA NA chr16:27367399,chr16:27367397 chr16:27670288,chr16:27670283 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Interleukin-4_receptor_alpha_chain__N-terminal(100%)|Domain_of_unknown_function_(DUF4457)(100%) IL4Ra_N(100%)|DUF4457(100%) 5 4 14 48 69 ENST00000543915.6 ENST00000261588.10 downstream upstream mismatches(3) CATCTCACCTATGCAGTCAACATTTGGAGTGAAAACGACCCGGCAGAT___TTCAGAATCTATAACGTGACCTACCTAGAACCCTCCCTCCGCATCGCAGCCAGCACCCTGAAGTCTGGGATTTCCTACAGGGCACGGGTGAGGGCCTGGGCTCAGTGCTATAACACCACCTGGAGTGAGTGGAGCCCCAGCACCAAGTGGCACAACT|GAGCTGAGAAGAAGCCTGGAACTTAGTGTAAATCTACAAAGGAAACAAAAGGATTGTTCCAGCGATGAGTATGACTCTATTGAGGAAGACATACTCTCTGAGCCTGAGCCAGAGGACCCGGCACTGGTGGGCCATCCCAGACATGACCGCCCTCCTTCCAGTGGCGACTGGACTCAGAAAGATGTTCACGGGGAACAGGAGACAGAAGGACGCTCTTCTCCAGGCCCAGACACCCTCGTGGTGCTGGAATTTAACCCAGCTTCCAAAA___GTCATAAAAGGGAAAGGAATTTGTCTGCAAAGCG HLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQCYNTTWSEWSPSTKWHN|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11344 IL4R::KATNIP ENSG00000077238.14::ENSG00000047578.14 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1998 TRUE 772 IL4R ENSG00000077238.14 protein_coding + + chr16:27313668-27364778:+ chr16:27346618:+ chr16:27324989-27376099:+ chr16:27357939:+ KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27677729:+ chr16:27561454-27791665:+ chr16:27689050:+ chr16:27356078,chr16:27356076 chr16:27658967,chr16:27658962 NA NA chr16:27367399,chr16:27367397 chr16:27670288,chr16:27670283 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Interleukin-4_receptor_alpha_chain__N-terminal(100%)|Domain_of_unknown_function_(DUF4457)(100%) IL4Ra_N(43%)|DUF4457(100%) 2 5 7 54 69 ENST00000543915.6 ENST00000261588.10 downstream upstream mismatches(1) GAGCATG___TGAAACCCAGGGCCCCAGGAAACCTGACAGTTCACACCAATGTCTCCGACACTCTGCTGCTGACCTGGAGCAACCCGTATCCCCCTGACAATTACCTGTATAATCATCTCACCTATGCAGTCAACATTTGGAGTGAAAACGACCCGGCAGAT|GAGCTGAGAAGAAGCCTGGAACTTAGTGTAAATCTACAAAGGAAACAAAAGGATTGTTCCAGCGATGAGTATGACTCTATTGAGGAAGACATACTCTCTGAGCCTGAGCCAGAGGACCCGGCACTGGTGGGCCATCCCAGACATGACCGCCCTCCTTCCAGTGGCGACTGGACTCAGAAAGAT EHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPAD|ELRRSLELSVNLQRKQKDCSSDEYDSIEEDILSEPEPEDPALVGHPRHDRPPSSGDWTQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11347 BBC3::FCGRT ENSG00000105327.18::ENSG00000104870.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 1999 FALSE NA BBC3 ENSG00000105327.18 protein_coding - - chr19:47220822-47232766:- chr19:47232515:- chr19:47724079-47736023:- chr19:47735772:- FCGRT ENSG00000104870.13 protein_coding + + chr19:49506816-49526428:+ chr19:49524571:+ chr19:50010073-50029685:+ chr19:50027828:+ chr19:47226559,chr19:47226563 chr19:49511780,chr19:49511776 NA NA chr19:47729816,chr19:47729820 chr19:50015037,chr19:50015033 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Bcl-2-binding_component_3__p53_upregulated_modulator_of_apoptosis(2%)|Immunoglobulin_C1-set_domain(91%) PUMA(0%)|C1-set(91%) 1 0 0 60 87 ENST00000300880.11 ENST00000593381.5 upstream upstream none ACAAAACTCACCAAACCAGAGCAGGGCAGGAAGTAACAATGAGAAACTGAAAAAGAAACGGAATGGAAAGCTATGAGACAGGATGAAATTTGGCATGGGGT...CCATGCCAGGTGCCCAGGGCTGCTTCCACGACGTGGGTCCCCTGCCAGATTTGTG|CGCCTTCTCCTTCTACCCTCCGGAGCTGCAACTTCGGTTCCTGCGG PCQVPRAASTTWVPCQIC|apspstlrscnfgsc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11348 RASAL2::ENSG00000227579 ENSG00000075391.18::ENSG00000227579.6 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RASAL2 ENSG00000075391.18 protein_coding + + chr1:178094104-178484147:+ chr1:178420620:+ chr1:178063239-178453282:+ chr1:178389755:+ ENSG00000227579 ENSG00000227579.6 lncRNA - + chr1:177392667-177920152:- chr1:177919566:+ chr1:177361803-177889287:- chr1:177888701:+ chr1:178422330,chr1:178422327 chr1:177869605,chr1:177869596 NA NA chr1:178391465,chr1:178391462 chr1:177838740,chr1:177838731 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 5 7 5 147 10 ENST00000367649.8 unknown downstream upstream low_entropy(1) GCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCCATGGACACTGCAAATACCTCACCCTTCAAAGTACCA___GGATTCTTCAGCAAGCGCCTGAAAGGCTCCATCAAGAGGACCAAAAGCCAGTCAAAGCTTGACAGAAACACGAGCTTTCGGCTTCCATCCCTTCGCAGTACAGATGACAG|ACGGGTGAAAATTTTGCAGTGTTCTGGCACCAACTGCATACCTGCATTTGGAAACCACCGGGGTGAATGCTTCCTGAGGTCTCTTACAGCCCTTATTTTATAAGATCCCATTTGCCATTTTACCTTTTCATACAAATTCAAGGAAAGCCATGCCACATATCTATCTTGTTCCTTCAAGCCACAGTGACAGACTGTGCCTGCAGAGGACAGTTCCTGAGGGAACACTTTTATACATTCACCTATCTACTCATTCATTCATTCATTCATCATTTAATAAGTACCTATTGACTATCAAGG AERSPRRRSISGTSTSEKPNSMDTANTSPFKVPGFFSKRLKGSIKRTKSQSKLDRNTSFRLPSLRSTDDr|rvkilqcsgtncipafgnhrgecflrsltalil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11349 AASS::LNCAROD ENSG00000008311.16::ENSG00000231131.10 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AASS ENSG00000008311.16 protein_coding - - chr7:122064583-122144308:- chr7:122113118:- chr7:121704637-121784362:- chr7:121753172:- LNCAROD ENSG00000231131.10 lncRNA - - chr10:52450874-52755509:- chr10:52684447:- chr10:54210634-54515269:- chr10:54444207:- chr7:122106934,chr7:122106936 chr10:52685726,chr10:52685725 NA NA chr7:121746988,chr7:121746990 chr10:54445486,chr10:54445485 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Alanine_dehydrogenase/PNT__N-terminal_domain(100%)| AlaDh_PNT_C(4%),AlaDh_PNT_N(100%)| 5 3 6 68 16 ENST00000679864.1 unknown upstream downstream mismatches(2) GGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATGTATGATGCAGACCAGCATATTATTCATGACAG___TGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTTGCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATG|GCTCAGTGCTTGAGATATTTGCAGACCCTACATTGGATGGATCAGCTGACACCACCCGGACTAGTAATCTGGCTCAATCAGTTCTGCCATCCCACTCAGGAACAGAAGACAGCAAGAAAACCTCACTTTGATTCCATCTCCAACCTGACCAATCAGCACTCCCCACGTCCGGAGCACTTACCTGCCAAATCTTTAAAACCTCCAGTCCTCAAATGCTTGGGGAGACTGATTTGAGTAATAACAAAACTCCAGTCTCCCACACAGCAGGCTCTGCATGAATTACTCTT...CTCTGTCTAGGCAGCCAGCAAGGTGAACCCATTGGGCAGTTACAGTAGCAAGTATTCCTACACCTTCAAGCAAGATGCTATCTGGACAAAGTAAGATATGG GGSIEFMTECTTIEHPFCMYDADQHIIHDSVEGSGILMCSIDNLPAQLPIEATECFGDMLYPYVEEM|aqclrylqtlhwmdqltppglviwlnqfchptqeqktarkphfdsisnltnqhsprpehlpakslkppvlkclgrli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11352 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1129 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45404999:- chr19:45882896-45909607:- chr19:45908257:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47531745:- chr19:48023947-48076405:- chr19:48035002:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(41%),ELM2_domain(17%) |ELM2(5%),zf-C2H2_6(7%) 2 5 5 16 10 ENST00000593226.5 ENST00000391901.8 upstream downstream none GTCACGTCGTCTAACCTGTTCCCAGCTCCTGCCCCGCCCCGTTCTCCGCTCCCCAAGCCGGAGCCCGAGCTGGAGGAAGCCCCCAGGTGCCAGGATCTGCCCGGATCC|TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAG___...GGAGACTCTTCTGC?CCGAGGGCCCCACAAGCCACGGACACACCTGCTCGCTGACTATCGCTACACAG___GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11353 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1130 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45406292:- chr19:45882896-45909607:- chr19:45909550:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521654:- chr19:48023947-48076405:- chr19:48024911:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(41%) |zf-C2H2_6(7%) 1 10 0 9 41 ENST00000418234.6 ENST00000391901.8 upstream downstream none CCACACTGCTCTTCCTAAGCCTTAAAGAGACAGGACGGTCGATTGGTCTGAAATTCTTGAAGAGACAG|GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAGCTGTTGGGAAGTGCAGAGAGCCAGGGCATTTTTCCATGCAGAGAGTGTGAAAG___GGTGTTTGACAAGATCAAGAGTCGAAATGCCCATATGAAGCGGCACCGCCTTCAGGACCACGTGGAGCCCATCATCAGGGTGAAGTGGCCAGTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11354 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45404999:- chr19:45882896-45909607:- chr19:45908257:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521994:- chr19:48023947-48076405:- chr19:48025251:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(41%) |zf-C2H2_6(7%) 1 2 3 16 30 ENST00000593226.5 ENST00000391901.8 upstream downstream none GTCACGTCGTCTAACCTGTTCCCAGCTCCTGCCCCGCCCCGTTCTCCGCTCCCCAAGCCGGAGCCCGAGCTGGAGGAAGCCCCCAGGTGCCAGGATCTGCCCGGATCC|ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCG...AAGGACAGAGGAAAAG___GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11355 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45404999:- chr19:45882896-45909607:- chr19:45908257:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47532270:- chr19:48023947-48076405:- chr19:48035527:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(41%),ELM2_domain(100%) |ELM2(100%),zf-C2H2_6(7%) 0 1 5 16 1 ENST00000593226.5 ENST00000391901.8 upstream downstream none GTCGATTGGTCTGAAATTCTTGAAGAGACAG___...GTCACGTCGTCTAACCTGTTCCCAGCTCCTGCCCCGCCCCGTTCTCCGCTCCCCAAGCCGGAGCCCGAGCTGGAGGAAGCCCCCAGGTGCCAGGATCTGCCCGGATCC|ACATATCAATATAGGAAGCCG...TCAGCTCAGAGACACAGGATAGAG___TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11356 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45404999:- chr19:45882896-45909607:- chr19:45908257:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521654:- chr19:48023947-48076405:- chr19:48024911:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(41%) |zf-C2H2_6(7%) 1 1 1 16 41 ENST00000593226.5 ENST00000391901.8 upstream downstream none GTCACGTCGTCTAACCTGTTCCCAGCTCCTGCCCCGCCCCGTTCTCCGCTCCCCAAGCCGGAGCCCGAGCTGGAGGAAGCCCCCAGGTGCCAGGATCTGCCCGGATCC|GTCCCATGCAGCCCTCGGGAGAGACCCAGCCACCATCCAACTCCCAAGTTAAAGACCAAGAGTTATAGGAGGGAGTCCATCCTCAGCTCCAGCCCAAATGCAGGCTCCAAGCGGACCCCCGAGCTGTTGGGAAGTGCAG...AAG___GGTGTTTGACAAGATCAAGAGTCGAAATGCCCATATGAAGCGGCACCGCCTTCAGGACCACGTGGAGCCCATCATCAGGGTGAAGTGGCCAGTGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11357 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE TRUE 1131 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45406292:- chr19:45882896-45909607:- chr19:45909550:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521994:- chr19:48023947-48076405:- chr19:48025251:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |C2H2-type_zinc_finger(41%) |zf-C2H2_6(7%) 0 10 0 9 30 ENST00000418234.6 ENST00000391901.8 upstream downstream none GCCTTAAAGAGACAGGACGGTCGATTGGTCTGAAATTCTTGAAGAGACAG|ATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAGGGTCAAGAGAGAGCCGGAGGAAGTGGAAAGGACAGAGGAAAAG___GTCCCATGCAGCCCTCGGGAGAGACCCA...C unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11358 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45406292:- chr19:45882896-45909607:- chr19:45909550:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47531745:- chr19:48023947-48076405:- chr19:48035002:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |C2H2-type_zinc_finger(41%),ELM2_domain(17%) |ELM2(5%),zf-C2H2_6(7%) 0 2 0 9 10 ENST00000418234.6 ENST00000391901.8 upstream downstream none GTCGATTGGTCTGAAATTCTTGAAGAGACAG|TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAG___GTCGCCCTGGAGACTCTTCTGCTCCGAGGGCCCCACAAGCCACGGACACACCTGCTCGC...AGATCCAGACAAAGACGGTAGCTCAGTGCGTTGAGTATTATTACATCTGGAAAAAAATGATCAAGTTTGACTGTGGCCGAGCCCCAGGGCTAGAAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11368 MIGA1::LINC01290 ENSG00000180488.17::ENSG00000260468.1 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIGA1 ENSG00000180488.17 protein_coding + + chr1:77779624-77879540:+ chr1:77843407:+ chr1:78245309-78345225:+ chr1:78309092:+ LINC01290 ENSG00000260468.1 lncRNA - + chr16:10514842-10528202:- chr16:10526592:+ chr16:10608699-10622059:- chr16:10620449:+ chr1:77848532,chr1:77848525 chr16:10518960,chr16:10518950 NA NA chr1:78314217,chr1:78314210 chr16:10612817,chr16:10612807 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Mitoguardin(49%)| Miga(64%)| 2 2 1 120 4 ENST00000443751.4 unknown downstream upstream duplicates(1),mismatches(1) TGGGGCATCTGATCCTAATTCCCTTGCTGATGATATTG___ATAAAGATACAGATATCACCATGAAGGGTAATGTGGAAGACTTTGGCCTGCGAGACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGCAGCAGAG|GGGCTTTTGAGAGGACATGATTGAACCTTTAGCCACCaATTACCAGGCCATAAGGAGCCCCAACTGGACCCGACTGAGATGCAGCACATCACCCATCGCCCTGGAGTGGGAGCTGGAAGTGGAAGCCGGTTGAGACCTCAG___GGGCCAAGCAGAACATTCTAAAAGGCCACCTGAGTTTGGGCGCTTACCCACCTGAAGG GASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAE|gllrghd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11375 ZNF224::ZNF233 ENSG00000267680.6::ENSG00000159915.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF224 ENSG00000267680.6 protein_coding + + chr19:44094361-44109886:+ chr19:44107040:+ chr19:44598514-44614039:+ chr19:44611193:+ ZNF233 ENSG00000159915.13 protein_coding + + chr19:44259880-44275317:+ chr19:44272899:+ chr19:44764033-44779470:+ chr19:44777052:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS CDS/splice-site deletion/read-through medium none KRAB_box(100%),Zinc_finger__C2H2_type(30%)|Zinc_finger__C2H2_type(100%) KRAB(100%),zf-C2H2(26%),zf-C2H2_6(61%)|zf-C2H2(100%),zf-met(100%) 3 5 9 59 34 ENST00000336976.10 ENST00000683810.1 downstream upstream duplicates(2),mismatches(6) CTATAAGTGTGAgGaaTGcGGgAAGGccTTCAGTCAGAGTTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCGTTCAAATGTGTGGAATGTGGGAAAGGCTTCAGTCGTAGATCAGCACTTAATGTTCATCAcAAATTACACACAGGAGAGAAACCTTATAATTGTGAGGAATGCGGGAAGGCCTTCATTCACGATTCCCAGCTTCAAGAACATCAGAGAATCCATACGGGGGAGAAGCCATTCAAATGTGATATATGTG|GACACAAGAATCAAAATGAGATAGATACCCTTCAAGAAGTAAGATTAAGATTCCTTTCATATGAAGACCTTATATGCTGGCAAATATGGGAACAATTTACAAGTAAATTAACCAGTAATCAAGACCTAATAATAAATCTTCAAGGCAAGAGGTCCAAGTTGCTAAAACAAGGTGATTCCCCCTGTCAGGTGTGGACAGGAGAATCTAGTCAGGTCTCTGAAGATGAGAACTATGTAATAAAGCTACAAGGGGAGAGTTCAAATAGCATAAAAAATCAAGAGCTTCCATTGAGG YKCeeCGKaFSQSSHLQTHQRVHTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPFKCDIC|gHKNQNEIDTLQEVRLRFLSYEDLICWQIWEQFTSKLTSNQDLIINLQGKRSKLLKQGDSPCQVWTGESSQVSEDENYVIKLQGESSNSIKNQELPL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11376 ZNF225-AS1::ZNF233 ENSG00000186019.12::ENSG00000159915.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF225-AS1 ENSG00000186019.12 lncRNA - + chr19:44103007-44113183:- chr19:44107040:+ chr19:44607160-44617336:- chr19:44611193:+ ZNF233 ENSG00000159915.13 protein_coding + + chr19:44259880-44275317:+ chr19:44272899:+ chr19:44764033-44779470:+ chr19:44777052:+ NA NA NA NA NA NA NA NA antisense sense unknown exon CDS/splice-site deletion/read-through/3'-3' medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-met(100%) 3 5 9 59 34 unknown ENST00000683810.1 downstream upstream duplicates(2),mismatches(6) CTATAAGTGTGAgGaaTGcGGgAAGGccTTCAGTCAGAGTTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCGTTCAAATGTGTGGAATGTGGGAAAGGCTTCAGTCGTAGATCAGCACTTAATGTTCATCAcAAATTACACACAGGAGAGAAACCTTATAATTGTGAGGAATGCGGGAAGGCCTTCATTCACGATTCCCAGCTTCAAGAACATCAGAGAATCCATACGGGGGAGAAGCCATTCAAATGTGATATATGTG|GACACAAGAATCAAAATGAGATAGATACCCTTCAAGAAGTAAGATTAAGATTCCTTTCATATGAAGACCTTATATGCTGGCAAATATGGGAACAATTTACAAGTAAATTAACCAGTAATCAAGACCTAATAATAAATCTTCAAGGCAAGAGGTCCAAGTTGCTAAAACAAGGTGATTCCCCCTGTCAGGTGTGGACAGGAGAATCTAGTCAGGTCTCTGAAGATGAGAACTATGTAATAAAGCTACAAGGGGAGAGTTCAAATAGCATAAAAAATCAAGAGCTTCCATTGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11381 ELP4::ENSG00000228061 ENSG00000109911.19::ENSG00000228061.7 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELP4 ENSG00000109911.19 protein_coding + + chr11:31509755-31790324:+ chr11:31539783:+ chr11:31531302-31811872:+ chr11:31561330:+ ENSG00000228061 ENSG00000228061.7 lncRNA - - chr11:31618124-31767953:- chr11:31710621:- chr11:31639671-31789501:- chr11:31732169:- chr11:31559474,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31721690,chr11:31721692,chr11:31721704,chr11:31721711,chr11:31721679,chr11:31721680,chr11:31721686 chr11:31714434,chr11:31721690,chr11:31721692,chr11:31721704,chr11:31721711,chr11:31721679,chr11:31721680,chr11:31721686,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417,chr11:31717417 NA NA chr11:31581021,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31743238,chr11:31743240,chr11:31743252,chr11:31743259,chr11:31743227,chr11:31743228,chr11:31743234 chr11:31735982,chr11:31743238,chr11:31743240,chr11:31743252,chr11:31743259,chr11:31743227,chr11:31743228,chr11:31743234,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965,chr11:31738965 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none PAXNEB_protein(22%)| PAXNEB(10%)| 2 2 1 117 2 ENST00000640961.2 unknown downstream downstream duplicates(1) GTTGGAACAGTTCTTCTAATTG___AGGAGGATAAATATAATATTTACTCACCTTTGCTCTTCAAGTATTTCCTGGCAGAAGGAATTGTCAATGGGCATACTTTGTTGGTTGCATCTGCTAAAGAGGATCCTGCCAACATTTTACAG|ATGGGGTCTCTGTCTGTCACCTAGGCCAGAGTGCAGTGGCACGATCTGGACTCACTGCAACCTCTGCCTCCAAGGTTCAAGCAATTCTCCTGTCTCAGCCTCCAGAATAGCTGGG VGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQ|mgslsvt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11388 ZNF235::ZNF224 ENSG00000159917.17::ENSG00000267680.6 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF235 ENSG00000159917.17 protein_coding - - chr19:44228729-44305046:- chr19:44298820:- chr19:44732882-44809199:- chr19:44802973:- ZNF224 ENSG00000267680.6 protein_coding + - chr19:44094361-44109886:+ chr19:44101167:- chr19:44598514-44614039:+ chr19:44605320:- chr19:44271207,chr19:44271211,chr19:44271209 chr19:44107055,chr19:44107056,chr19:44107135 NA NA chr19:44775360,chr19:44775364,chr19:44775362 chr19:44611208,chr19:44611209,chr19:44611288 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' medium none KRAB_box(100%)| KRAB(39%)| 0 1 1 32 79 ENST00000650576.1 unknown upstream downstream none TGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG___GACATCAGTCCTTCAAACCAGAT...AGCTTTGGATGAAGGAGCTTCAAACCCAAAGAG|GAAGTGGAAAGTATCCCTGTGGAATGCTTGATGTCCTGCAAACAGGCAAACTTACATGCTTAATCCCAACACATTCTAG___GATACAAAGCCACtTCTGGGGCCTGACGTTCTGTTACAGAGGGTGCCTGTCCTCAC LWMKELQTQR|gsgkypcgmldvlqtgkltclipthsriqshfwgltfcyrgclss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11391 ZNF225-AS1::ZNF235 ENSG00000186019.12::ENSG00000159917.17 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF225-AS1 ENSG00000186019.12 lncRNA - - chr19:44103007-44113183:- chr19:44107060:- chr19:44607160-44617336:- chr19:44611213:- ZNF235 ENSG00000159917.17 protein_coding - - chr19:44228729-44305046:- chr19:44271305:- chr19:44732882-44809199:- chr19:44775458:- NA NA NA NA NA NA NA NA sense sense unknown exon intron deletion/read-through low none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(39%),zf-C2H2(80%),zf-met(100%) 0 0 8 59 9 ENST00000661725.1 unknown downstream upstream none TCTACCACAGAAGCTCTTACCACATATATCACATTTGAATGGCTTCTCCCCCGTATGGATTCTCTGATGTTCTTGAAGCTGGGAATCGTGAATGAAGGCCTTCCCGCATTCCTCACAATTATAAGGTTTCTCTCCTGTGTGTAATTTgTGATGAACATTAAGTGCTGATCTACGACTGAAGCCTTTCCCACATTCCACACATTTGAACG|...GGATGTCCCCTCTTTCTTTCTTTGAGAATTCTTGGCATCACTAAATAATCCACTTGTGAATGCTGAAGGAGAGATTCAGGCTTTTGTAACCATTTTTGGGCTTTATCA...GAGGAGAGGATTTTTTTTTTTTTTTGAGACGGAGTCTCgCTCTGTAGCCCAGGCTTGAGTGCAGTGGCACGATCTCCGCTCgCTGCAAGCTCTGCCTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11392 GTPBP2::POLH ENSG00000172432.19::ENSG00000170734.12 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GTPBP2 ENSG00000172432.19 protein_coding - - chr6:43605316-43629264:- chr6:43622003:- chr6:43573053-43597001:- chr6:43589740:- POLH ENSG00000170734.12 protein_coding + + chr6:43576185-43620523:+ chr6:43613660:+ chr6:43543922-43588260:+ chr6:43581397:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Elongation_factor_Tu_GTP_binding_domain(100%)|Ubiquitin-Binding_Zinc_Finger(100%),impB/mucB/samB_family_C-terminal_domain(16%) GTP_EFTU(100%)|IMS_C(0%),zf_UBZ(100%) 1 3 2 608 94 ENST00000307126.10 ENST00000372236.9 upstream upstream none GCTGCTTCCTGGAGCTGAGAGTATGCAGCATCCAGCGCAACCGCTCTGCCTGTCGTGTGCTGCGAGCTGGTCAGGCTGCTACAtTGGCGCTTGGGGACTTTGACCGTGCACTGCTTCGCAAG___GGCATGGTGATGGTGAGCCCGGAGATGAATCCTACCATCTGCTCGGTGTTTGAGGCAGAGATAGTCTTACTGTTCCATGCCACCACCTTCCGACGAGGATTCCAGGTGACAGTACACGTGGGCAACGTACGTCAGACGGCAGTGGTGGAAAAGATCCATGCCAAG|GTCTCCTCCTCTCACAATGCTTTTCCTCTGTGCTACAAAATTTTCTGCCTCTGCCCCTTCATCTTCTACAGACATCACCAGCTTCTTGAGCAGTGACCCAAGTTCTCTGCCAAAGGTGCCAGTTACCAGCTCAGAAGCTAAG CFLELRVCSIQRNRSACRVLRAGQAATLALGDFDRALLRKGMVMVSPEMNPTICSVFEAEIVLLFHATTFRRGFQVTVHVGNVRQTAVVEKIHAK|vssshnafplcykifclcpfifyrhhqlleq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 43592247 FALSE 43571629 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11412 STARD13::CNTFR ENSG00000133121.21::ENSG00000122756.15 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STARD13 ENSG00000133121.21 protein_coding - - chr13:33103137-33350630:- chr13:33285470:- chr13:33677274-33924767:- chr13:33859607:- CNTFR ENSG00000122756.15 protein_coding - - chr9:34551432-34590140:- chr9:34564832:- chr9:34551430-34590138:- chr9:34564830:- chr13:33203713,chr13:33203715 chr9:34565476,chr9:34565475 NA NA chr13:33777850,chr13:33777852 chr9:34565474,chr9:34565473 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Fibronectin_type_III_domain(100%) |fn3(100%) 1 0 0 127 2 ENST00000336934.10 ENST00000610543.4 upstream downstream none GACACCTGAGGGCCAGGAGATGTACTTGCGATTTGATCAGACTACAAGACGCTCTCCTTACAGGATGAGCCGGATTCTAGCACGCCATCAGCTAGTGACTAAAATTCAACAAG|AGGCACCCCATGTGCAGTACGAGCGCCTGGGCTCTGACGTGACACTGCCATGTGGGACAGCAAACgGG TPEGQEMYLRFDQTTRRSPYRMSRILARHQLVTKIQQ|eAPHVQYERLGSDVTLPCGTAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11419 ATP5F1B::PAN2 ENSG00000110955.9::ENSG00000135473.16 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP5F1B ENSG00000110955.9 protein_coding - - chr12:56638175-56645984:- chr12:56642458:- chr12:57031959-57039768:- chr12:57036242:- PAN2 ENSG00000135473.16 protein_coding - + chr12:56316223-56334053:- chr12:56327049:+ chr12:56710007-56727837:- chr12:56720833:+ chr12:56640003,chr12:56640005 chr12:56326745,chr12:56326743 NA NA chr12:57033787,chr12:57033789 chr12:56720529,chr12:56720527 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none ATP_synthase_alpha/beta_family__beta-barrel_domain(100%),ATP_synthase_alpha/beta_family__nucleotide-binding_domain(78%)| ATP-synt_ab(53%),ATP-synt_ab_N(100%)| 70 32 64 12941 169 ENST00000262030.8 unknown upstream upstream duplicates(34),inconsistently_clipped(1),mismatches(5) CTCTGACTGGGCTGACTGTGGCTGAATACTTCAGAGACCAAGAAGGTCAAGATGTACTGCTATTTATTGATAACATCTTTCGCTTCACCCAGGCTGGTTCAGAG___GTGTCTGCATTATTGGGCCGAATCCCTTCTGCTGTGGGCTATCAGCCTACCCTGGCCACTGACATGGGTACTATGCAGGAAAGAATTACCACTACCAAGAAGGGATCTATCACCTCTGTACAG|GACAAGATGGGCCCCAAATCCATGCCTAGAGACAGAATGCCACTTCGTGCCTTCCATAAACCACAGATGGTTCGCTACTCAGCAAAGAGCAATTCTACAGTTATTTTGCCTACTTTATCTTTACCTTTTTCCATGTTCCTCATATTCAAGAAAATAAAAGCTCTAATCTC LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ|dkmgpksmprdrmplrafhkpqmvrysaksnstvilptlslpfsmflifkkikali NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11424 R3HDM2::OS9 ENSG00000179912.21::ENSG00000135506.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1133 TRUE 2012 TRUE 774 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57395749:- chr12:57647545-57824826:- chr12:57789532:- OS9 ENSG00000135506.17 protein_coding + + chr12:57693841-57728342:+ chr12:57715760:+ chr12:58087624-58122125:+ chr12:58109543:+ chr12:57357381,chr12:57357403,chr12:57357752,chr12:57357760 chr12:57714306,chr12:57714284,chr12:57714251,chr12:57714243 NA NA chr12:57751164,chr12:57751186,chr12:57751535,chr12:57751543 chr12:58108089,chr12:58108067,chr12:58108034,chr12:58108026 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Glucosidase_II_beta_subunit-like_protein(4%) |Ank(100%),Ank_2(100%),ArfGap(100%),PRKCSH(11%),PRKCSH_1(0%) 19 34 22 326 1756 ENST00000402412.6 ENST00000257966.13 upstream upstream duplicates(9),mismatches(12) CCGTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG___AGGTTAGACTTGTTTCTTATATGTGATGCCATTCCAGCACTGGACTCATGGAGGCTGAGCATTTATTCAG|TTCCTCTGTGACGAGGGTGCAGGTATCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCTGACCATTCGCACTCCTCGGCTCTGCCCCCACCCTCTCCTCCGGCCCCCACCCAGTGCTGCACCGCAGGCCATCCTCTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACGTTCAGAGGCAAGCCG___...AGACTCAAAGCAGTATGGAGATAAAATCATAGAGGAGCTGCAAGATCTAGGCCCCCAAGTGTGGAGTGAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11425 R3HDM2::OS9 ENSG00000179912.21::ENSG00000135506.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2012 TRUE 774 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430720:- chr12:57647545-57824826:- chr12:57824503:- OS9 ENSG00000135506.17 protein_coding + + chr12:57693841-57728342:+ chr12:57715760:+ chr12:58087624-58122125:+ chr12:58109543:+ chr12:57357381,chr12:57357403,chr12:57357752,chr12:57357760 chr12:57714306,chr12:57714284,chr12:57714251,chr12:57714243 NA NA chr12:57751164,chr12:57751186,chr12:57751535,chr12:57751543 chr12:58108089,chr12:58108067,chr12:58108034,chr12:58108026 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Glucosidase_II_beta_subunit-like_protein(4%) |Ank(100%),Ank_2(100%),ArfGap(100%),PRKCSH(11%),PRKCSH_1(0%) 0 2 0 177 1756 ENST00000402412.6 ENST00000389142.10 upstream upstream mismatches(1) CGAGCCGCAGCCGgGCGGCCGTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG|TTCCTCTGTGACGAGGGTGCAGGTATCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCTGACCATTCGCACTCCTCGGC...CACCCAGTGCTcCACCGCgGGCCATCCTCTGTCcCCCTTCCCTACAGCCTGAGGAGTACATGGCCTACGTTCAGAGGCAAGCCG___ACTCAAAGCAGTATGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11427 PDE1C::BBS9 ENSG00000154678.18::ENSG00000122507.21 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE1C ENSG00000154678.18 protein_coding - - chr7:31751179-32428131:- chr7:32051554:- chr7:31790793-32467743:- chr7:32091166:- BBS9 ENSG00000122507.21 protein_coding + - chr7:33109557-33877180:+ chr7:33331411:- chr7:33149169-33916792:+ chr7:33371023:- chr7:31926382,chr7:31926384 chr7:33333153,chr7:33333152 NA NA chr7:31965995,chr7:31965997 chr7:33372765,chr7:33372764 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 10 14 23 689 28 ENST00000396182.6 unknown upstream downstream duplicates(8),mismappers(4),mismatches(3) GCCAGTGGTCACCTACCTGCAGCTATGGAGTCGCCAACCAAGGAGATTGAAGAATTTGAGAGCAACTCTCTGAAATACCTGCAACCGGAACAGATCGAGAAAATCTGGCTTCGGCTCCGCGGGCT___GAGGAAATATAAGAAAACGTCCCAGAG|GACTTCCAGTACTATGTTGAATAAAAGTGGTGGAAGTGGACATCCTTGTCTTATCCCAATTCTCAAGGGAAATGATTTCAACTTTTCCCCATTCAGCATGATGCTGGCTGTGGGTTTGTCATATACGGCTTTTATTACTTTGAG___GTTGGCCATGGTACTGATTCAATAGATGGAAAAAGAAAAGCGTGACTTGTTCCTTTAT MESPTKEIEEFESNSLKYLQPEQIEKIWLRLRGLRKYKKTSQr|tsstmlnksggsghpclipilkgndfnfspfsmmlavglsytafitlrlamvliq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11428 ZNFX1::NCOA3 ENSG00000124201.15::ENSG00000124151.19 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNFX1 ENSG00000124201.15 protein_coding - - chr20:49237946-49278426:- chr20:49275779:- chr20:47854483-47894963:- chr20:47892316:- NCOA3 ENSG00000124151.19 protein_coding + + chr20:47501887-47656877:+ chr20:47622229:+ chr20:46130631-46285621:+ chr20:46250973:+ chr20:49272459,chr20:49272462 chr20:47586234,chr20:47586231 NA NA chr20:47888996,chr20:47888999 chr20:46214978,chr20:46214975 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%) |DUF1518(100%),DUF4927(100%),NCOA_u2(100%),Nuc_rec_co-act(100%),PAS(100%),PAS_11(100%),PAS_9(100%),SRC-1(100%) 3 8 20 90 112 ENST00000371754.8 ENST00000371998.8 upstream upstream duplicates(7),mismatches(1) GGGCCACCGACCTGCCTGGGCCGAAGCCCCAGCACTCGCCGGCGGCAGTGAAAGGACGCGCCGGAGCCGG___TTTTCCAGATAACAGAAAGTAACGTGAAGGAATTCAGGTGACTCAGACATGGAGGAGAGAAGACCTCATCTGGATGCCAGGCCCAGGAATTCCCATACCAACCACAGAG|TTGCTGATGTATATTCAAGATGAGTGGATTAGGAGAAAACTTGGATCCACTGGCCAGTGATTCACGAAAACGCAAATTGCCATGTGATACTCCAGGACAAGG___TCTTACCTGCAGTGGTGAAAAACGGAGACGGGAGCAGGAAAGTAAATATATTGAAGAATTGGC MEERRPHLDARPRNSHTNHR|vadvysr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11429 DHX35::SOGA1 ENSG00000101452.15::ENSG00000149639.15 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHX35 ENSG00000101452.15 protein_coding + + chr20:38962299-39039723:+ chr20:39002868:+ chr20:37590942-37668366:+ chr20:37631511:+ SOGA1 ENSG00000149639.15 protein_coding - + chr20:36777447-36863538:- chr20:36824158:+ chr20:35405850-35491941:- chr20:35452561:+ chr20:39003778,chr20:39003778 chr20:36822301,chr20:36822298 NA NA chr20:37632421,chr20:37632421 chr20:35450704,chr20:35450701 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Helicase_conserved_C-terminal_domain(15%)| Helicase_C(1%)| 8 5 14 127 31 ENST00000373325.6 unknown downstream upstream duplicates(2),mismatches(1) GCGAGGGGATCTTCGATTGATTGTAGCTTCAGCCACTCTGGATGCAGAC___AAATTCCGGGATTTCTTTAATCAAAATGAAACCAGTGATCCAGCAAGGGATACATGTGTGATCCTTACAGTGGAAGGGAGAACATTTCCGGTGGATATCTTTTATCTACAAAG___TCCTGTTCCAGATTATATCAAATCAACTGTCGAAACTGTGGTGAAAATTCACCAGACAGAGGGAGACGGAGACGTTTTAGCATTTCTTACTGGCCAG|TCACGTCTACATCCTGCAGTTCTACTCCCTGGGATCTACACAAGAGAACTAACACAGAATCTCAGAAACGTGCACATGAATGTTCCCAGCAGCATTATTCATAGTAGCCAAAACAACCCAGATAAATGGACAAATCTAATGTGGTCATATACCCACACAATGGATGATTACTCAGCCATAAAGAGGAATGAGGTCCTGCTACATTCTTCAACATGGATGGATAAACCTTGAAAACCTGATGCTAAGTAAAAGAGGCCAGTCACCAAAGACTCCATTTGGATGAAGCATCCAGA RGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDYIKSTVETVVKIHQTEGDGDVLAFLTGQ|srlhpavllpgiytreltqnlrnvhmnvpssiihssqnnpdkwtnlmwsythtmddysaikrnevllhsstwmdkp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11430 IAH1::TBC1D16 ENSG00000134330.19::ENSG00000167291.16 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1135 FALSE NA FALSE NA IAH1 ENSG00000134330.19 protein_coding + + chr2:9473658-9496543:+ chr2:9481447:+ chr2:9613787-9636672:+ chr2:9621576:+ TBC1D16 ENSG00000167291.16 protein_coding - - chr17:79932343-80035872:- chr17:80013609:- chr17:77906142-78009671:- chr17:77987408:- chr2:9482145,chr2:9482144 chr17:80019395,chr17:80019396 NA NA chr2:9622274,chr2:9622273 chr17:77993194,chr17:77993195 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site translocation high none GDSL-like_Lipase/Acylhydrolase(29%),GDSL-like_Lipase/Acylhydrolase_family(76%)|Rab-GTPase-TBC_domain(100%) Lipase_GDSL(50%),Lipase_GDSL_2(50%)|RabGAP-TBC(100%) 8 5 13 50 46 ENST00000481367.5 ENST00000310924.7 downstream downstream duplicates(1),mismatches(9) AAAATGTGATGTTCTGAATCGTGGATTTTCAGGTTACAATACCAGGTGGGCCAAAATTATCCTTCCAAGATTAATCAGGAAAGGAAACAGTTTGGACATCCCAGTAGCAGTTACAATTTTCTTTGGGGCCAATGACAGTGCACTAAAAG___ATGAGAATCCCAAGCAGCACATTCCCCTGGAGGAGTACGCTGCGAACCTAAAGAGCATGGTGCAGTACCTGAAGTCCGTGGACATCCCTGAGAATCGAGTCATTCTCATCACGCCGACCCCACTTTGTGAAACAGCCTGGGAAGAACAGTGCATCATACAAG|GCAGGTCTTGACGAGCCCTGCCCGGGCCGACGCATGCGGAGGATGGAAACACTTGCCCGGCAATGTCTCTGGGCCGCCTCCTTCGCAGGGCCTCCTCCAAAGCCTCGGACCTCCTGACCCTCACCCCCGGTGGCAGCGGCAGCGGGTCCCCCTCTGTCCTGGATGGAGAGATCATCTACTCCAAGAACAATGTCTGCGTGCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11432 TOP1::EYA2 ENSG00000198900.7::ENSG00000064655.19 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1136 TRUE 2013 TRUE 775 TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41084568:+ chr20:39657462-39753127:+ chr20:39713208:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47143059:+ chr20:45523263-45817492:+ chr20:45771698:+ chr20:41089095,chr20:41089095 chr20:47132375,chr20:47132372 NA NA chr20:39717735,chr20:39717735 chr20:45761014,chr20:45761011 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |haloacid_dehalogenase-like_hydrolase(88%) |Hydrolase(46%) 8 5 6 589 37 ENST00000361337.3 ENST00000458636.2 downstream upstream duplicates(4),low_entropy(2),mismatches(3) ACAAACATAAAGACAGAGACAAGGAAAAACGAAAAGAGGAAAAG___GTTCGAGCCTCTGGGGATGCAAAAATAAAGAAGGAGAAGGAAAATGGCTTCTCTAG___TCCACCACAAATTAAAGATGAACCTGAAGATGATGGCTATTTTGTTCCTCCTAAAGAGGATATAAAGCCATTAAAGAGACCTCGAGATGAGGATGA___TGCTGATTATAAACCTAAGAAAATTAAAACAGAAGATACCAAGAAGGAGAAGAAAAGAAAACTAGAAGAAGAAGAG___GATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAAAAAAGTTCCTGAGCCAGATAACAAGAAAAAGAAGCCGAAGAAAGAAGAGGAACAGAAGTGGAAATG|GACACCACGACGTCCGTGCGCATTGGCCTTATGATGGAAGAGATGATCTTCAACCTTGCAGATACACATCTGTTCTTCAATGACCTGGAGG KHKDRDKEKRKEEKVRASGDAKIKKEKENGFSSPPQIKDEPEDDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKw|tprrpcalal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3616 chr20:47166967-47167058:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11433 TOP1::EYA2 ENSG00000198900.7::ENSG00000064655.19 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2013 TRUE 775 TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41084568:+ chr20:39657462-39753127:+ chr20:39713208:+ EYA2 ENSG00000064655.19 protein_coding + - chr20:46894624-47188844:+ chr20:47067083:- chr20:45523263-45817492:+ chr20:45695722:- chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095,chr20:41089095 chr20:47132385,chr20:47132428,chr20:47132405,chr20:47132396,chr20:47132418,chr20:47132425,chr20:47132436,chr20:47132439,chr20:47132440,chr20:47132441 NA NA chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735,chr20:39717735 chr20:45761024,chr20:45761067,chr20:45761044,chr20:45761035,chr20:45761057,chr20:45761064,chr20:45761075,chr20:45761078,chr20:45761079,chr20:45761080 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 1 1 3 589 18 ENST00000361337.3 unknown downstream downstream duplicates(1),mismatches(1) ATGATGGCTATTTTGTTCCTCCTAAAGAGGATATAAAGCCATTAAAGAGACCTCGAGATGAGGATGA___TGCTGATTATAAACCTAAGAAAATTAAAACAGAAGATACCAAGAAGGAGAAGAAAAGAAAACTAGAAGAAGAAGAG___GATGGTAAATTGAAAAAACCCAAGAATAAAGATAAAGATAAAAAAGTTCCTGAGCCAGATAACAAGAAAAAGAAGCCGAAGAAAGAAGAGGAACAGAAGTGGAAATG|GGTCAGCTGAAGAATGGACAGCTGAACAAACTACAGCGTGAGGGCAGCCACAGAGTGCCTGCAGTGAGAAATCCATCCTGTGCCAGAGAGGACCCAGGAAGAAGGGGGCACGTGGCCCCTGAAGTCTTGTGCCACAAGTTGTGGTCTCTGGAGGGTTTTGACAAACtGAC DGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKw|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11434 PTPRO::SOX5 ENSG00000151490.15::ENSG00000134532.20 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15322801:+ chr12:15475191-15755109:+ chr12:15475735:+ SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24277312:- chr12:23682438-24715478:- chr12:24430246:- chr12:15371088,chr12:15371089 chr12:24300296,chr12:24300295 NA NA chr12:15524022,chr12:15524023 chr12:24453230,chr12:24453229 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |HMG_(high_mobility_group)_box(100%) |HMG_box(100%),HMG_box_2(100%) 4 5 9 9 27 ENST00000281171.9 ENST00000646273.1 downstream downstream duplicates(3) CGGGCGCAGAGGAGGAAAGGGAGCAGGCGCAGGGGGACTGGAAAGGCAGCATGCGCTCGCCAGGAGCAACCTCGGCGCCCAGGGTCTGAGGCTGCAGCCCCAGTTCGCCATTGTGAGCCGCCGCCGGGGGAGTCCGCTAGCGCAGCCGTGCCCCCGAGTCCCCGTCCGCGCAGCGATGGGGCACCTGCCCACGGGGATACACGGCGCCCGCCGCCTCCTGCCTCTGCTCTGGCTCTTTGTGCTGTTCAAG|CTTTCCTCTTGCTGATGACATGATTCCTGTTTGAATCTGTTGACAAGATTCTGAAAGCTGAACAGAGAATTCTGGCACTGCACTGGGTAGGAAAAAG___CATTTCAAGAAATAGATAATATCAAGGACATCAGGACACCGGGAGTGGGAGAGATTGGACTGGGAGACTCAGCAG___GATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAG MGHLPTGIHGARRLLPLLWLFVLFK|lssc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11440 SEMA4D::CDC14B ENSG00000187764.12::ENSG00000081377.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2015 TRUE 776 SEMA4D ENSG00000187764.12 protein_coding - - chr9:89360787-89498130:- chr9:89474539:- chr9:91975702-92113045:- chr9:92089454:- CDC14B ENSG00000081377.17 protein_coding - - chr9:96490241-96619843:- chr9:96523725:- chr9:99252523-99382125:- chr9:99286007:- chr9:89463934,chr9:89463936,chr9:89463938 chr9:96533144,chr9:96533143,chr9:96533143 NA NA chr9:92078849,chr9:92078851,chr9:92078853 chr9:99295426,chr9:99295425,chr9:99295425 NA NA sense sense unknown intron CDS/splice-site duplication high none |Dual_specificity_phosphatase__catalytic_domain(47%) |DSPc(1%),PTPlike_phytase(0%),Y_phosphatase(1%) 4 8 2 5 91 unknown ENST00000474602.5 upstream downstream duplicates(1) GTGAACAAGTGAGAGAGTGGAGCTGGTCACAGAG___GGTGGGCTTGAAAACGATAATGAAGTGTACACACTGAAAAAACAAAAATCACCCACGGGTTCTGAAGCTCAGTGGAGTTCTGCAG|CTGGCCTTGGTCGCACGGGCACTCTGATAGCCTGCTACATCATGAAGCATTACAGGATGACAGCAGCCGAGACCATTGCGTGGGTCAGGATCTGCAGACCTGGCTCGGTGATTGGGCCTCAGCAGCAGTTTTTGGTGAT___GAAGCAAACCAACCTCTGGCTGGAAGGGGACTATTTTCGTCAGAAGTTAAAGGGGCAGGAGAATGGACAACACAGAGCAGCCTTCTCCAAACTTCTCTCTGGCGTTGATGACATTTCCATAAATGGGGTCGAGAATCAAGATCAGCAAGAACCCGAACCG___TACAGTGATGATGACGAAATCAATGGAGTGACACAAGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11441 SEMA4D::CDC14B ENSG00000187764.12::ENSG00000081377.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2015 TRUE 776 SEMA4D ENSG00000187764.12 protein_coding - - chr9:89360787-89498130:- chr9:89497919:- chr9:91975702-92113045:- chr9:92112834:- CDC14B ENSG00000081377.17 protein_coding - - chr9:96490241-96619843:- chr9:96523725:- chr9:99252523-99382125:- chr9:99286007:- chr9:89463934,chr9:89463936,chr9:89463938 chr9:96533144,chr9:96533143,chr9:96533143 NA NA chr9:92078849,chr9:92078851,chr9:92078853 chr9:99295426,chr9:99295425,chr9:99295425 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Dual_specificity_phosphatase__catalytic_domain(47%) |DSPc(1%),PTPlike_phytase(0%),Y_phosphatase(1%) 0 6 0 11 91 ENST00000339861.8 ENST00000474602.5 upstream downstream none CGCCATTCCTGGCGCCCGAACTCGCCCGGCCGGGAGCCGCCGCGGGCAGGACGCGCGCTGCAG|CTGGCCTTGGTCGCACGGGCACTCTGATAGCCTGCTACATCATGAAGCATTACAGGATGACAGCAGCCGAGACCATTGCGTGGGTCAGGATCTGCAGACCTGGCTCGGTGATTGGGCCTCAGCAGCAGTTTTTGGTGAT___GAAGCAAACCAACCTCTGGCTGGAAGGGGACTATTTTCGTCAGAAGTTAAAGGGGCAGGAGAATGGACAACACAGAGCAGCCTTCTCCAAACTTCTCTCTGGCGTTGATGACATTTCCATAAATGGGGTCGAGAATCAAGATCAGCAAGAACCCGAACCG___TACAGTGATGATGACGAAATCAATGGAGTGACACAAGGTGATAGACTTCGGGCCTTGAAAAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11442 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2016 TRUE 777 USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62381663:+ chr12:62654119-62811211:+ chr12:62775444:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58757032:- chr12:58959742-59175529:- chr12:59150814:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(9%)| DUSP(100%),UCH(53%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 3 1 8 301 4 ENST00000280377.10 ENST00000552201.1 downstream downstream mismatches(2) ATAGAACAGAAAAATGAAGATGGAACATGGCCAAGGGGTCCTTCTACTCCTAA___GTCCCCAGGTGCATCCAATTTTTCAACTTTACCAAAGATCTaTCCTTC...CAGAAA___TGTGAAAAACTCAAATTACTGTCTTCCATCATATACCGCTTATAAGAACTATGATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGgGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG___TGTTTGAGCAACACACCTCCACTTACTGAGTATTTCCTCAATGATAAGTATCAAGAAGAACTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCTTATGCCGAACTGATCAAGCAAATGTGGTCTGGAAAGTTTAGCTACGTCACCCCAAGAGCCTTTAAG|CTCCAGCTCCCTGCCACCTCCACATCTCCCAGTCAGCCTCTTGTTGGCACACTGAATCACTCTGGGGCCAGTGAGTAATAAAT RNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLwGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK|lqlpatstspsqplvgtlnhsgase* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11443 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2016 TRUE 777 USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62381663:+ chr12:62654119-62811211:+ chr12:62775444:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58712352:- chr12:58959742-59175529:- chr12:59106134:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(9%)| DUSP(100%),UCH(53%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 1 1 6 301 2 ENST00000353364.7 ENST00000670826.1 downstream downstream mismatches(1) CATGAACTCAGCTATTCAG___TGTTTGAGCAACACACCTCCACTTACTGAGTATTTCCTCAATGATAAGTATCAAGAAGAACTGAATTTTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCTTATGCCGAACTGATCAAGCAAATGTGGTCTGGAAAGTTTAGCTACGTCACCCCAAGAGCCTTTAAG|TATGTTTCAGGCTTCGTATTAAGTGTCAAAGATCCCATGACAAGACAGCTCCCCTGCTTGCTGGGAGGACGTGGTGAGGACAGGGTACATCTGAAACCTCTGGTGTGTCTGGCAGAGTTGCAAACGACTAGATTCCATCCAAGATCAAATGAATCAGAATCTGTG___GCATTTCATTCAAGG MNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK|yvsgfvlsvkdpmtrqlpcllggrgedrvhlkplvclaelqttrfhprsnesesvafhs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11444 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2016 TRUE 777 USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62381663:+ chr12:62654119-62811211:+ chr12:62775444:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58654445:- chr12:58959742-59175529:- chr12:59048227:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(9%)| DUSP(100%),UCH(53%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 1 0 2 301 8 ENST00000353364.7 ENST00000668012.1 downstream downstream duplicates(2),mismatches(1) GAAACAATGAACAGCCAGGCCTCTGTGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG___TGTTTGAGCAACACACCTCCACTTACTGAGTATTTCCTCAATGATAAGTATCAAGAAGAACTGAATTTTGACAATCCCTTAGGAAT...TTTAGCTACGTCACCCCAAGAGCCTTTAAG|GAGAAATTCAAGCCAGCTGCAGAAATTTGCTTGAGTAGCAAGGAGCCCAATGTTAATCCTCAAGACCATAGGGAAAATGTCTCCAGGCCATGTCAGAGACCTTCATGGCAG FSYVTPRAFK|ekfkpaaeiclsskepnvnpqdhrenvsrpcqrpsw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11445 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2016 TRUE 777 USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62355475:+ chr12:62654119-62811211:+ chr12:62749256:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58712352:- chr12:58959742-59175529:- chr12:59106134:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(2%)| DUSP(100%),UCH(0%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 1 0 2 282 2 ENST00000353364.7 ENST00000670826.1 downstream downstream none ATACAATTGAAAAGGAAATAAGAAAAATCTTCAGTATTCCAGATGAAAAGGAGACCAGATTGTGGAACAAATACATGAGTAACACATTTGAACCACTGAAT...GAAAAACTCAAATTACTGTCTTCCATCATATACCGCTTATAAGAACTATGATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGTGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG|TATGTTTCAGGCTTCGTATTAAGTGTCA...TGACAAGACAGCTCCCCTGCTTGCTGGGAGGACGTGGTGAGGACAGGGTACATCTGAAACCTCTGGTGTGTCTGGCAGAGTTGCAAACGACTAGATTCCATCCAAGATCAAATGAATCAGAATCTGTG___GCATTTCATTCAAGG KNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQ|yvsgfvlsv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11446 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2016 TRUE 777 USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62355475:+ chr12:62654119-62811211:+ chr12:62749256:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58757032:- chr12:58959742-59175529:- chr12:59150814:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(2%)| DUSP(100%),UCH(0%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 1 0 2 282 4 ENST00000353364.7 ENST00000552201.1 downstream downstream none CTGGTTTATACCAAGGACAG___GTATTAGTGATAGAACAGAAAAATGAAGATGGAACATGGCCAAGGGGTCCTTCTACTCCTAA___GTCCCCAGGTGCATCCAAT...GAAAAACTCAAATTACTGTCTTCCATCATATACCGCTTATAAGAACTATGATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGTGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG|CTCCAGCTCCCTGCCACCTCCACATCTCCCAGTCAGCCTCTTGTTGGCACACTGAATCAC KNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQ|lqlpatstspsqplvgtln NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11447 LINC02388::USP15 ENSG00000257259.3::ENSG00000135655.16 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2017 TRUE 778 LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58600171:- chr12:58959742-59175529:- chr12:58993953:- USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62389431:+ chr12:62654119-62811211:+ chr12:62783211:+ chr12:58597789,chr12:58597792 chr12:62384151,chr12:62384148 NA NA chr12:58991571,chr12:58991574 chr12:62777932,chr12:62777929 NA NA sense sense unknown intron CDS/splice-site inversion medium none |Ubiquitin-specific_protease_C-terminal(84%),Ubiquitin_carboxyl-terminal_hydrolase(64%) |Choline_bind_1(100%),UCH(30%),UCH_1(100%),USP7_C2(9%) 1 1 0 1 226 unknown ENST00000353364.7 upstream upstream none GAGATCTTAACATTTGTTCCCGTTTTTGCACTTCAGTTACTCCTGGGAAGTACCAAAAACGCACAAAGAACATTGGGTCAGTGGCCTCAAGAAAAATAAGT...TGAAAATGAGACCAGAAGATGGAAGAATCTGGATCTCAAAAG|TACAAAGTGGTTGTCCCCAAAATTGGAAACATATTAGATCTTTGTACAGCATTGTCTGCTTTGTCAGGAATACCTGCAGATAAG___ATGATAGTTACTGATATATACAATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11448 LINC02388::USP15 ENSG00000257259.3::ENSG00000135655.16 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2017 TRUE 778 LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58756963:- chr12:58959742-59175529:- chr12:59150745:- USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62389431:+ chr12:62654119-62811211:+ chr12:62783211:+ chr12:58597789,chr12:58597792 chr12:62384151,chr12:62384148 NA NA chr12:58991571,chr12:58991574 chr12:62777932,chr12:62777929 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Ubiquitin-specific_protease_C-terminal(84%),Ubiquitin_carboxyl-terminal_hydrolase(64%) |Choline_bind_1(100%),UCH(30%),UCH_1(100%),USP7_C2(9%) 0 1 0 4 226 ENST00000552201.1 ENST00000353364.7 upstream upstream none CTCTTGTTGGCACACTGAATCACTCTGGGGCCA|TACAAAGTGGTTGTCCCCAAAATTGGAAACATATTAGATCTTTGTACAGCATTGTCTGCTTTGTCAGG...AACGGGATtATATTTATGT___GTTTGAAATTAACATCAATAGGACAGAAGATACAGAGCACGTGATTATTCCTGTTTGCCTAAGAGAAAAATTCAGACACTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11451 CTNNA3::MYPN ENSG00000183230.18::ENSG00000138347.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA3 ENSG00000183230.18 protein_coding - - chr10:65912457-67763637:- chr10:67521842:- chr10:67672215-69523395:- chr10:69281600:- MYPN ENSG00000138347.17 protein_coding + - chr10:68087897-68212017:+ chr10:68157814:- chr10:69847654-69971774:+ chr10:69917571:- chr10:67296039,chr10:67296042,chr10:67296044 chr10:68163953,chr10:68163953,chr10:68163953 NA NA chr10:69055797,chr10:69055800,chr10:69055802 chr10:69923710,chr10:69923710,chr10:69923710 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Vinculin_family(21%)| Vinculin(0%)| 1 0 8 36 4 ENST00000684154.1 unknown upstream downstream duplicates(2) GTTCAAGCTGCCCGTGCCTTGCTGGCTGCGGTGACGAGACTCCTTATCCTTGCGGACATGATTGATGTCATGTGCCTCTTGCAACATGTGTCAGCT___TTTCAAAGGACATTTGAGTCTCTCAAAAATGTTGCCAACAAATCTGACCTCCAGAAAACCTACCAGAAGCTTGGGAAGGAGCTGGAAAATTTGGATTATTTAGCCTTCAAACGTCAGCAG|GCTGGTGTGCAGTGTTGTGATCATGGCTCACTGCAGCTTCAACCTCCCAGGCTCAAGCGATCCTCTCgCCTCAGCTTCCTGAATAGCTGGGACTAAAGGCACAGGTCACC VQAARALLAAVTRLLILADMIDVMCLLQHVSAFQRTFESLKNVANKSDLQKTYQKLGKELENLDYLAFKRQQ|agvqccdhgslqlqpprlkrssrlsflnswd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11458 ENSG00000242588::ENSG00000273184 ENSG00000242588.7::ENSG00000273184.1 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2020 TRUE 779 ENSG00000242588 ENSG00000242588.7 lncRNA + + chr7:128531707-128663479:+ chr7:128580094:+ chr7:128171761-128303533:+ chr7:128220148:+ ENSG00000273184 ENSG00000273184.1 lncRNA + + chr7:128455840-128493859:+ chr7:128479158:+ chr7:128095894-128133913:+ chr7:128119212:+ chr7:128590859,chr7:128590808 chr7:128472532,chr7:128472478 NA NA chr7:128230913,chr7:128230862 chr7:128112586,chr7:128112532 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 3 4 63 544 ENST00000605862.6 ENST00000462662.1 downstream upstream none GGGGACATAAAATTAGTGATTACTTTGAG___TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG|TTGATTATGAGATCAATGCCCACAAATACTGGAATGACTTCTACAAAATCCACGAAAATGGGTTTTTCAAGGATAGACATTGGCTTTTTACCGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATTTGAAGGATTGGTTCTTGGAGAACAAGAGTGAAGTATGTGAATGTAGAAACAATGAGGATGGACCTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCGAAGAGCCTTGAACATAAAACACAGACACCTCCTGTGGAGGAGAATGTAACTCAGAAAATTAGTGACCTGGAAATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11459 ENSG00000242588::ENSG00000273184 ENSG00000242588.7::ENSG00000273184.1 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2020 TRUE 779 ENSG00000242588 ENSG00000242588.7 lncRNA + + chr7:128531707-128663479:+ chr7:128574791:+ chr7:128171761-128303533:+ chr7:128214845:+ ENSG00000273184 ENSG00000273184.1 lncRNA + + chr7:128455840-128493859:+ chr7:128479158:+ chr7:128095894-128133913:+ chr7:128119212:+ chr7:128590859,chr7:128590808 chr7:128472532,chr7:128472478 NA NA chr7:128230913,chr7:128230862 chr7:128112586,chr7:128112532 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 67 544 ENST00000605862.6 ENST00000462662.1 downstream upstream mismatches(1) ATTATTAGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG___GGACCACTTAATAGTGAGTCTTCCAACCAGAGCTTGTGTAGCGTCAGATCCTTGAGTGATAAAGGAGTAGAG|TTGATTATGAGATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11460 ENSG00000280828::ENSG00000273184 ENSG00000280828.1::ENSG00000273184.1 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2021 TRUE 780 ENSG00000280828 ENSG00000280828.1 unprocessed_pseudogene + + chr7:128533652-128615970:+ chr7:128580094:+ chr7:128173706-128256024:+ chr7:128220148:+ ENSG00000273184 ENSG00000273184.1 lncRNA + + chr7:128455840-128493859:+ chr7:128479158:+ chr7:128095894-128133913:+ chr7:128119212:+ chr7:128590859,chr7:128590808 chr7:128472532,chr7:128472478 NA NA chr7:128230913,chr7:128230862 chr7:128112586,chr7:128112532 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 3 4 63 544 ENST00000479267.2 ENST00000462662.1 downstream upstream none GGGGACATAAAATTAGTGATTACTTTGAG___TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG|TTGATTATGAGATCAATGCCCACAAATACTGGAATGACTTCTACAAAATCCACGAAAATGGGTTTTTCAAGGATAGACATTGGCTTTTTACCGAATTCCCTGAGCTGGCACCTAGCCAAAATCAAAATCATTTGAAGGATTGGTTCTTGGAGAACAAGAGTGAAGTATGTGAATGTAGAAACAATGAGGATGGACCTGGTTTAATAATGGAAGAACAGCACAAGTGTTCTTCGAAGAGCCTTGAACATAAAACACAGACACCTCCTGTGGAGGAGAATGTAACTCAGAAAATTAGTGACCTGGAAATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11461 ENSG00000280828::ENSG00000273184 ENSG00000280828.1::ENSG00000273184.1 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2021 TRUE 780 ENSG00000280828 ENSG00000280828.1 unprocessed_pseudogene + + chr7:128533652-128615970:+ chr7:128574791:+ chr7:128173706-128256024:+ chr7:128214845:+ ENSG00000273184 ENSG00000273184.1 lncRNA + + chr7:128455840-128493859:+ chr7:128479158:+ chr7:128095894-128133913:+ chr7:128119212:+ chr7:128590859,chr7:128590808 chr7:128472532,chr7:128472478 NA NA chr7:128230913,chr7:128230862 chr7:128112586,chr7:128112532 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 67 544 ENST00000479267.2 ENST00000462662.1 downstream upstream mismatches(1) ATTATTAGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG___GGACCACTTAATAGTGAGTCTTCCAACCAGAGCTTGTGTAGCGTCAGATCCTTGAGTGATAAAGGAGTAGAG|TTGATTATGAGATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11470 USP15::ENSG00000258231 ENSG00000135655.16::ENSG00000258231.5 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62381663:+ chr12:62654119-62811211:+ chr12:62775444:+ ENSG00000258231 ENSG00000258231.5 lncRNA + - chr12:58544124-58813060:+ chr12:58727932:- chr12:58937907-59206842:+ chr12:59121714:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(9%)| DUSP(100%),UCH(53%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 0 2 2 301 4 ENST00000353364.7 unknown downstream downstream none GATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGgGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG___TGTTTG...TTGACAATCCCTTAGGAATGAGAGGTGAAATAGCTAAATCTTATGCCGAACTGATCAAGCAAATGTGGTCTGGAAAGTTTAGCTACGTCACCCCAAGAGCCTTTAAG|GGCTTGTTGAAATGCAGCCAGTGTAGTAAAAAATGACTGTGAAAACGTAGACTCCTCTGCTGACATGCCACGAAGAGAAGACAAGAACAAGTTGCTATTCATTTTCGGAAGGTGCCCACAGGACAGTGTGCCACACTGGTCTTTTCCTTCATCACTCATTACAG DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFK|gllkcsqcskk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11473 AMN1::ST8SIA1 ENSG00000151743.11::ENSG00000111728.11 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AMN1 ENSG00000151743.11 protein_coding - - chr12:31671142-31729121:- chr12:31689007:- chr12:31824076-31882055:- chr12:31841941:- ST8SIA1 ENSG00000111728.11 protein_coding - + chr12:22063773-22437041:- chr12:22165325:+ chr12:22216707-22589975:- chr12:22318259:+ chr12:31687837,chr12:31687844 chr12:22143450,chr12:22143443 NA NA chr12:31840771,chr12:31840778 chr12:22296384,chr12:22296377 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Leucine_Rich_repeat(100%)| LRR_6(100%)| 0 1 1 34 2 ENST00000281471.11 unknown upstream upstream duplicates(1) AAGAAATTAGAG___GAGATTCATATGGGACATTGTGTAAATCTGACTGATGGGGCTGTCGAAGCTGTCCTTACTTACTGTCCTCAAATACGTATATTACTCTTCCATGGATGCCCCTTGATAACAG|GCACTTCTCCTTGCTGCCGCTGTGTAAAAAAGAATGTGTTTGCTTCCCCTTCTGCCATGATT___GAAGTGGGCTGGAGTGAGGTATCTTCACATGGG KKLEEIHMGHCVNLTDGAVEAVLTYCPQIRILLFHGCPLIT|gtspccrcvkknvfaspsamievgwsevssh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11474 AVIL::LRIG3 ENSG00000135407.11::ENSG00000139263.12 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AVIL ENSG00000135407.11 protein_coding - - chr12:57797376-57818734:- chr12:57801144:- chr12:58191159-58212517:- chr12:58194927:- LRIG3 ENSG00000139263.12 protein_coding - + chr12:58872149-58920504:- chr12:58884352:+ chr12:59265931-59314285:- chr12:59278134:+ chr12:57801104,chr12:57801106 chr12:58880309,chr12:58880307 NA NA chr12:58194887,chr12:58194889 chr12:59274091,chr12:59274089 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Gelsolin_repeat(100%)| Gelsolin(100%)| 0 1 1 102 9 ENST00000549994.2 unknown upstream upstream duplicates(2) CAaACCAATCCTGATCATTAAGCAGGGGTTTGAGCCTCCCATCTTCACAGGCTGGTTCCTAGCCTGGGACCCTAACATTTGGAGT___GCAGGAAAAACATATG...CTGGGAGATGCTGCTGCTATCATGCGAATCACTGCT|GGGTCACAGTATACAAAGGGAATATTGAGTGAGACAAGTGGGAAGAGAAGACAAAGAAAGAAGGGACCAGACATGGCTAGACGAAGAGGCTGG...GGTCTGCCCTTCCAAAACTCAGCTTTGCAGAATCATTCTACTATAATTTGAACTGCCGCACTCACTGTCTGGGTGGCTtACGATCCAAGTCTCCCTCAGAG LGDAAAIMRITA|gsqytkgilsetsgkrrqrkkgpdmarrrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11477 ZNF445::SLC45A4 ENSG00000185219.18::ENSG00000022567.10 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1137 TRUE 2023 TRUE 781 ZNF445 ENSG00000185219.18 protein_coding - - chr3:44431705-44477670:- chr3:44477591:- chr3:44473197-44519162:- chr3:44519083:- SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141254629:- chr8:142217265-142318404:- chr8:142264728:- chr3:44458244,chr3:44458249 chr8:141279906,chr8:141279908 NA NA chr3:44499736,chr3:44499741 chr8:142290005,chr8:142290007 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation medium none |MFS/sugar_transport_protein(100%) |MFS_2(100%) 0 16 0 23 129 ENST00000396077.8 ENST00000517878.6 upstream downstream duplicates(7),mismatches(11) GGCGGCTGCGGTGGCGGCGGGTGGACCGATTGTCGCTCGGCGGCGGGAGTCG|ATCATCCAGTCACTCGATGGGGATTACCAGCGGACCACCTGTTTGTATCACCTTCCCACCTCTCTGTAGCAAGAAAAATCACTTCAGCACCTCTTCAGTAATAATGATGAAACTGGTATTAACTGAATGGCAATTATGGATTTTTAACTCTAATTCACAGTAAACCAGCAAGCCATATGTTTAAAATCCAACCAAAAATCGTTCTGTGTTGCTGCATGTCTCATACCGTTGTGAGAAGTTGTGAGATAGCCACTTGTGCAAAGAGGAATGTAAGTGTTACCTGCCCGAGGAACACAGCAGAAGCAGAAAGAGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11478 ZNF445::SLC45A4 ENSG00000185219.18::ENSG00000022567.10 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2023 TRUE 781 ZNF445 ENSG00000185219.18 protein_coding - - chr3:44431705-44477670:- chr3:44477591:- chr3:44473197-44519162:- chr3:44519083:- SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141221765:- chr8:142217265-142318404:- chr8:142231864:- chr3:44458244,chr3:44458249 chr8:141279906,chr8:141279908 NA NA chr3:44499736,chr3:44499741 chr8:142290005,chr8:142290007 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |MFS/sugar_transport_protein(99%) |MFS_2(8%) 0 0 0 23 49 ENST00000396077.8 ENST00000517878.6 upstream downstream mismatches(1) CGGGACGGGCGGCTGCGGTGGCGGCGGGTGGACCGATTGTCGCTCGGCGGCGGGgGgCG|GCCTTCCGGAGCAGgACTcCAGCCTCACCTGGTTCCTGAGC...CCTTCATCCTCGCCCTCTGCGTTGGCGTCCTCTTTGGCGTTGCACTTTTCCTTAACGGCTCTGCCATCG___GTCTGGCCCTCGGCGATGTCCCCAACCGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11483 SLC45A4::RALYL ENSG00000022567.10::ENSG00000184672.12 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141308096:- chr8:142217265-142318404:- chr8:142318195:- RALYL ENSG00000184672.12 protein_coding + + chr8:84182787-84921844:+ chr8:84529299:+ chr8:85095022-85834079:+ chr8:85441534:+ chr8:141279929,chr8:141279931 chr8:84496751,chr8:84496749 NA NA chr8:142290028,chr8:142290030 chr8:85408986,chr8:85408984 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%) 0 3 0 0 7 ENST00000517878.6 ENST00000517638.5 upstream upstream none CCCGGCCCGGCCGCCCCGCCGCCCCCGCGGCCCCGGCCGGAGGAGACAG|GATTAAAGCAAGGAGAGCCAATCATGACTGGCAAAACACAGACCAGCAACGTCACCAATAAGAATGACCCC...TCCATCAACTCCCGTGTTTTCATCGGCAATCTAAATACGGCAATTGTCAAGAAAGTTGACATTGAAGCCATTTTTTCAAAGTATGGAAAAATAGTTGGATGTTCCGTTCACAAAGGTTATGCATTTGTACAGTACATGAGTGAGCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11485 IFFO1::LINC02955 ENSG00000010295.20::ENSG00000256995.8 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IFFO1 ENSG00000010295.20 protein_coding - - chr12:6538961-6556073:- chr12:6555257:- chr12:6648127-6665239:- chr12:6664423:- LINC02955 ENSG00000256995.8 lncRNA + + chr12:22699859-23188807:+ chr12:23053991:+ chr12:22852793-23341741:+ chr12:23206925:+ chr12:6554138,chr12:6554146 chr12:22982581,chr12:22982573 NA NA chr12:6663304,chr12:6663312 chr12:23135515,chr12:23135507 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 2 0 0 49 3 ENST00000336604.8 ENST00000538317.6 upstream upstream mismatches(1) CTGGAGCCCACTCTGGTGCAAGGGCCTGGCTTGTCGTGGGTGCACCCGGATGGGGTGGGCGTCCAGATCGACACCATCACGCCCGAGATCCGCGCTCTCTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCGGAG|TGCAGCCCGGAGAGCTGTGAGCAGTGCCACAGGAGGAGATGACTGGTGAGTGAAATAAGCAAGATAGGAGTTGAAGTGT LEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRs|aarravssatggddw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11489 ENSG00000258830::R3HDM2 ENSG00000258830.1::ENSG00000179912.21 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258830 ENSG00000258830.1 protein_coding - - chr12:57249609-57296484:- chr12:57268303:- chr12:57643392-57690267:- chr12:57662086:- R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57310463:- chr12:57647545-57824826:- chr12:57704246:- chr12:57267767,chr12:57267772,chr12:57267777,chr12:57267774 chr12:57325671,chr12:57325807,chr12:57325675,chr12:57325675 NA NA chr12:57661550,chr12:57661555,chr12:57661560,chr12:57661557 chr12:57719454,chr12:57719590,chr12:57719458,chr12:57719458 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site duplication low none |R3H_domain(100%),SUZ_domain(100%) SUZ(100%)|R3H(100%),SUZ(100%) 2 5 5 495 366 ENST00000548184.1 ENST00000402412.6 upstream downstream duplicates(2),low_entropy(1) CCAGCAGCCACAGAACCAGGGCCTGCTCAGCAGCCAGAGGAGCAGCATGGGGGGCCAGATGCAAGGCCTGGTGGTTCAGTACACTCCACTGCCTTCTTACCAA___GTTCCAGTGGGTAGTGACTCGCAAAATGTGGTCCAGCCGCCTTTCCAGCAACCCATGCTGGTCCCTGTGAGCCAGTCTGTGCAAGGAGGCCTCCCAGCAGCGGGGGTACCAGTGTACTATAGCATGATCCCACCTGCTCAGCAGAACGGTACGAG|GAGTCCATAGAGGCCACTGTATTCTATTGAAGAACATGTCTAACAGTAACACTACTCAAGAGACCCTGGAAATAATGAAAGAATCAGAAAAAAAACTGGTGGAAGAATCTGTAAACAAAAACAAGTTTATATCTAAGACTCCAAGTAAGGAAGAAATTGAGAAAGAATGTGAAGATACCAGTTTGCGTCAGGAGACACAG___AGGCGGACATCTAACCATGGTCATGCCAGGAAAAGAGCCAAG___TCTAATTCCAAGCTAAAGTTGGTGCGTAGCCTGGCAGTGTGTGAGGAGTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11490 LRP8::CZIB ENSG00000157193.18::ENSG00000162384.14 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRP8 ENSG00000157193.18 protein_coding - - chr1:53242364-53328469:- chr1:53326873:- chr1:53708036-53794141:- chr1:53792545:- CZIB ENSG00000162384.14 protein_coding - - chr1:53214099-53220634:- chr1:53216859:- chr1:53679771-53686306:- chr1:53682531:- chr1:53314089,chr1:53314091 chr1:53218151,chr1:53218153 NA NA chr1:53779761,chr1:53779763 chr1:53683823,chr1:53683825 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Low-density_lipoprotein_receptor_domain_class_A(14%)|CXXC_motif_containing_zinc_binding_protein__eukaryotic(45%) Ldl_recept_a(15%)|DUF866(38%) 1 3 3 65 386 ENST00000306052.12 ENST00000294360.5 upstream downstream none GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCTCCAGCATCTTGCGGCGGCAGCGGCTGATCCGCTGCTCGGCGGgCAAGG...CCGGAACGAGCGCTGCATCCCCTCTGTGTGGAGATGCGACGAGGACGATGACTGCTTAGACCACAGCGACGAGGACGACTGCC|GCTGAAGACAATGAGAACTTCAAGACAATAGTGGAGTTTGAGTGCCGGGGCCTTGAACCAGTTGATTTCCAGCCGCAG___GCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAG___GACTG...CCTCTTCCTTCCCAGTTGCCCTTAAGAACTGAGAAAGGACAAAGTACTCTAAGCAGCAGAGCCCACAGAGGCTCGTTCCTTTGACCCTTGTCTCCTGGTGG RNERCIPSVWRCDEDDDCLDHSDEDDC|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11495 ABCA1::ENSG00000290551 ENSG00000165029.17::ENSG00000290551.1 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCA1 ENSG00000165029.17 protein_coding - - chr9:104781006-104928155:- chr9:104861741:- chr9:107543287-107690436:- chr9:107624022:- ENSG00000290551 ENSG00000290551.1 lncRNA + - chr9:81977614-82780194:+ chr9:82742255:- chr9:84592529-85395109:+ chr9:85357170:- chr9:104859761,chr9:104859763 chr9:82778856,chr9:82778855 NA NA chr9:107622042,chr9:107622044 chr9:85393771,chr9:85393770 NA NA sense antisense unknown CDS intron deletion/5'-5' low none none none 0 0 4 286 24 ENST00000374736.8 unknown upstream downstream duplicates(1) GCCAGAAAGACACCAGCATGAAGGACATGCGCAAAGTTCTGAGAACATTACAGCAGATCAAGAAATCCAGCTCAA___ACTTGAAGCTTCAAGATTTCCTGGTGGACAATGAAACCTTCTCTGGGTTCCTGTATCACA...|...CGGTTACCCAGAAAGTTGTTGGAGAAAATTGTTCTAGATAATTGTCTGGATGGTAAGGCCCTAAAGTACATTTATTAAGACCAAGTCCATAGCCACTCAACCCCTACAGATATACTAATGGAACCTAGGTGTGGTAGATCATATAATTAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11498 CREB3L2::DGKI ENSG00000182158.16::ENSG00000157680.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2026 TRUE 782 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- DGKI ENSG00000157680.17 protein_coding - - chr7:137381037-137847092:- chr7:137623554:- chr7:137065783-137531838:- chr7:137308300:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Ankyrin_repeats_(3_copies)(100%),Diacylglycerol_kinase_accessory_domain(100%),Diacylglycerol_kinase_catalytic_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(69%) |Ank(100%),Ank_2(100%),Ank_4(100%),C1_1(14%),DAGK_acc(100%),DAGK_cat(100%) 0 1 2 80 5 ENST00000330387.11 ENST00000614521.2 upstream downstream duplicates(1),mismappers(1),mismatches(1) CGGCAGCCTTTGGTCCGGCTCGTGTCCCTGGGGATTCTCGGATCTCCGAGGACACCGGACGGGAGCGCTTGGCCATCCTCTCTCCGGCAGAGGAGCAGACGTTTGCTTTCCAAGTGCAAAACTACAGACACGCGCGCGCACACACGCAAGCACACGCGGAGAGAGAGGAACCTTGCCGGTCCGAGGCAGCTCTGCGCGTCCCCTCCTGCcCTTAGCATCCTCGGC...GAGCGGGGAGCAGGGCGTGCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGGGACGGCGAGGCCCTCATGTACCACACG|GGCTTCCAGCAAAAGTTCTCCTTCCACAGTAAAGAGATTGTGGCTATCAGCTGTTCCTGGTGCAAGCAGGCG___TTTCACAATAAGGTGACCTGCTTCATGCTGCATCACATTGAAGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCCCGC...GAaCATTAAGGTGAAGAAACCTCAG___AACTCCCTGAAGGCTTCAAATCGGAAGAAGAAGAGAACAAGCTTTAAAAGAAAAGCCAGTAAAAGAGGGATGGAA SGEQGVLQWDRKLSELSEPGDGEALMYHT|GFQQKFSFHSKEIVAISCSWCKQAFHNKVTCFMLHHIEEPCSLGAHAAVIVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11499 CREB3L2::DGKI ENSG00000182158.16::ENSG00000157680.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2026 TRUE 782 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- DGKI ENSG00000157680.17 protein_coding - - chr7:137381037-137847092:- chr7:137619940:- chr7:137065783-137531838:- chr7:137304686:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Ankyrin_repeats_(3_copies)(100%),Diacylglycerol_kinase_accessory_domain(100%),Diacylglycerol_kinase_catalytic_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(28%) |Ank(100%),Ank_2(100%),Ank_4(100%),C1_1(0%),DAGK_acc(100%),DAGK_cat(100%) 1 1 1 80 9 ENST00000330387.11 ENST00000614521.2 upstream downstream mismatches(1) CGGATCTCCGAGGACACCGGACGGGAGCGCTTGGCCATCCTCTCTCCGGCAGAGGAGCAGACGTTTGCTTTCCAAGTGCAAAACTACAGACACGCGCGCGCACACACGCAAGCACACGCGGAGAGAGAGGAACCTTGCCGGTCCGAGGCAGCTCTGCGCGTCCCCTCCTGCcCTTAGCATCCTCGGC...GGCGAGGCCCTCATGTACCACACG|TTTCACAATAAGGTGACCTGCTTCATGCTGCATCACATTGAAGAACCCTGCTCCCTGGGGGCTCATGCTGCTGTTATTGTCC...AGGGATGGAA___CAGGAAAACAAAGGTCGTCCTTTTGTGATAAAACCCATCTCTTCTCCTCTCATGAAACCCTTGCTTGTATTTGTGAATCCCAAGAGTGGAG GEALMYHT|FHNKVTCFMLHHIEEPCSLGAHAAVIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11506 LRIG3::TSFM ENSG00000139263.12::ENSG00000123297.20 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2028 TRUE 783 LRIG3 ENSG00000139263.12 protein_coding - - chr12:58872149-58920504:- chr12:58880581:- chr12:59265931-59314285:- chr12:59274363:- TSFM ENSG00000123297.20 protein_coding + + chr12:57782761-57808071:+ chr12:57802555:+ chr12:58176544-58201854:+ chr12:58196338:+ chr12:58880307,chr12:58880309 chr12:57801106,chr12:57801104 NA NA chr12:59274089,chr12:59274091 chr12:58194889,chr12:58194887 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Immunoglobulin_domain(100%),Leucine_rich_repeat(100%)| I-set(31%),Ig_3(44%),LRRCT(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%),ig(38%)|Gelsolin(83%) 0 2 0 185 104 ENST00000320743.8 ENST00000550559.5 upstream upstream none GGGAAATATCAGTGTGTCATCTCCAATCACTTTGGTTCATCCTACTCTGTCAAAGCCAAGCTTACAGTAAATA|GTCTGCCTTTCCAAATTGGAGCTGTCTCTGAACTTCAGCTTCCTGAATCCAACTTCTTGCAGAACACCTCCTCTTGACTGCTCTAAGCACCTTAAAAATAACACCTTCAaGATGTAGCTCTTCTTTACTAAACTTGTATCTGAGTCTCCACTTTTGATAGGTGGTATCTATCTAGTCACCTAAGGCAG GKYQCVISNHFGSSYSVKAKLTVN|slpfqigavselqlpesnflqntss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE leucine-rich repeats and immunoglobulin-like domains 3 1 NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11507 LRIG3::TSFM ENSG00000139263.12::ENSG00000123297.20 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2028 TRUE 783 LRIG3 ENSG00000139263.12 protein_coding - - chr12:58872149-58920504:- chr12:58880369:- chr12:59265931-59314285:- chr12:59274151:- TSFM ENSG00000123297.20 protein_coding + + chr12:57782761-57808071:+ chr12:57802555:+ chr12:58176544-58201854:+ chr12:58196338:+ chr12:58880307,chr12:58880309 chr12:57801106,chr12:57801104 NA NA chr12:59274089,chr12:59274091 chr12:58194889,chr12:58194887 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion low none Immunoglobulin_domain(100%),Leucine_rich_repeat(100%)| I-set(31%),Ig_3(44%),LRRCT(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%),ig(38%)|Gelsolin(83%) 0 1 0 98 104 ENST00000433272.6 ENST00000550559.5 upstream upstream none AGACGACACCGTACTCAGTGTG|GTCTGCCTTTCCAAATTGGAGCTGTCTCTGAACTTCAGCTTCCTGAATCCAACTTCTTGCAGAACACCTCCTCTTGACT...CTGAGTCTCCACTTTTGATAGGTGGTATCTATCTAGTCACCTAAGGCAGAAaCCTGAGAGTTTCCTAGAAACCCCCCATATCCAATGAGTCACCAGGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE leucine-rich repeats and immunoglobulin-like domains 3 1 NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11514 NDUFAF6::LINC00534 ENSG00000156170.14::ENSG00000253394.7 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NDUFAF6 ENSG00000156170.14 protein_coding + + chr8:94895533-95116455:+ chr8:95048558:+ chr8:95907761-96128683:+ chr8:96060786:+ LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90454409:+ chr8:91233569-91700091:+ chr8:91466637:+ chr8:95064094,chr8:95064094 chr8:90288181,chr8:90288178 NA NA chr8:96076322,chr8:96076322 chr8:91300409,chr8:91300406 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Squalene/phytoene_synthase(84%)| DOR(100%),SQS_PSY(71%)| 0 1 0 158 1 ENST00000396113.5 ENST00000667296.1 downstream upstream none GGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GCCACCAAGTTCTATTGAACATCATGAATCCTATGCTCAAGTGAGATCAGCTCAAGTGAGACCAGATATCTGAAGACCTTTTCATTTTCGC RNQDKNVRDVIYDIASQAHLHLKH|atkfy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11519 RRM2B::NCALD ENSG00000048392.13::ENSG00000104490.18 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRM2B ENSG00000048392.13 protein_coding - - chr8:102204502-102238961:- chr8:102212776:- chr8:103216730-103251189:- chr8:103225004:- NCALD ENSG00000104490.18 protein_coding - + chr8:101686542-102124907:- chr8:102049109:+ chr8:102698770-103137135:- chr8:103061337:+ chr8:102212124,chr8:102212126 chr8:102044677,chr8:102044675 NA NA chr8:103224352,chr8:103224354 chr8:103056905,chr8:103056903 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Ribonucleotide_reductase__small_chain(97%)| Ribonuc_red_sm(85%)| 12 4 18 2695 46 ENST00000251810.8 unknown upstream upstream duplicates(48),mismatches(1) TTTGCTGCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGAGATGAA___GGACTTCACTGTGACTTTGCTTGCCTGATGTTCCAATACTTAGTAAATAAGCCTTCAGAAGAAAGGGTCAGGGAGATCATTGTTGATGCTGTCAAAATTGAGCAG___GAGTTTTTAACAGAAGCCTTGCCAGTTGGCCTCATTGGAATGAATTGCATTTTGATGAAACAGTACATTGAGTTTGTAGCTGACAGATTACTTGTGGAACTTGGATTCTCAAAG|AGATGAAAAACACTGAAGTAAATCACTCAGGATCCCACAGCCAGTAGCCATCTGTATCCATAGGTCCGCATCTGCAGTTTCAACTAACATCTGAGGAAAAAATAGTCTTTAAGGGACACGAAATCCGAGGATGCAGAGTGAAGGAGGCAACTTTCCACATGCACAGATTCCAAAGGGCCAACCGCATGGATCCAATCCCCCATGGATATCGAGGGACAGTG___...ATGCTTCAGTTTTTGATTCATTTGGGC FAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11520 LSM14A::GARRE1 ENSG00000257103.9::ENSG00000166398.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1139 TRUE 2030 TRUE 784 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34196763:+ chr19:34663409-34720193:+ chr19:34687668:+ GARRE1 ENSG00000166398.14 protein_coding + + chr19:34254552-34355566:+ chr19:34319907:+ chr19:34745457-34846471:+ chr19:34810812:+ chr19:34202205,chr19:34202170 chr19:34303654,chr19:34303610 NA NA chr19:34693110,chr19:34693075 chr19:34794559,chr19:34794515 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Scd6-like_Sm_domain(100%)|Domain_of_unknown_function_(DUF4745)(17%) LSM14(100%),SM-ATX(100%)|DUF4745(0%) 10 6 17 834 221 ENST00000544216.8 ENST00000299505.8 downstream upstream duplicates(53),mismatches(1) GGCGCCATGAGCGGGGGCACCCCTTACATCGGCAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTACACCATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAG___TTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAG___TCCTCACTAGGCTCATCGACTTCTTCATTCCAGTCCATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG|GTGTTGGGGCGATGTTTCCTGACTGTGGTGCAAGTCCATTTCCAGTTTTTGACTCATGCGTTACAGAAGGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGAGGTCATCGTGCCAGAAAAAAAGAACAGCGGCAGTGGCGGCGGCTTATCTGGCATGGGCCACACACCTGAAGTAGAGGAAGCTGTGCGGTCCTGGCGGGGGGCTGCTGAG___GCGACATCTAGACTAAGAGAAAGAGGCTGTGATGGTTGCCTGGCAGGAATTGAAGTTCAACAACTCTTTTGTTCTCAAA MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSSLVGQQFGAVGV|gvgamfpdcgaspfpvfdscvtegpaggslllc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11521 LSM14A::GARRE1 ENSG00000257103.9::ENSG00000166398.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2030 TRUE 784 LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34194641:+ chr19:34663409-34720193:+ chr19:34685546:+ GARRE1 ENSG00000166398.14 protein_coding + + chr19:34254552-34355566:+ chr19:34319907:+ chr19:34745457-34846471:+ chr19:34810812:+ chr19:34202205,chr19:34202170 chr19:34303654,chr19:34303610 NA NA chr19:34693110,chr19:34693075 chr19:34794559,chr19:34794515 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Scd6-like_Sm_domain(100%)|Domain_of_unknown_function_(DUF4745)(17%) LSM14(100%),SM-ATX(100%)|DUF4745(0%) 2 1 9 1102 221 ENST00000544216.8 ENST00000299505.8 downstream upstream duplicates(16) CAGCAAGATCAGCCTCATCTCCAAGGCGGAGATCCGCTACGAGGGCATCCTCTACACgATCGACACCGAAAACTCCACCGTAGCCCTTGCCAAAG___TTCGATCCTTTGGTACAGAAGACAGACCGACAGATCGTCCAATACCACCTCGAGATGAAGTCTTTGAATACATTATATTCCGTGGGAGTGACATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAG|GTGTTGGGGCGATGTTTCCTGACTGTGGTGCAAGTCCATTTCCAGTTTTTGACTCATGCGTTACAGAAGGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGAGGTCATCGTGCCAGAAAAAAAGAACAGCGGCAGTGGCGGCGGCTTATCTGGCATGGGCCACACACCTGAAGTAGAGGAAGCTGTGCGGTCCTGGCGGGGGGCTGCTGAG___GCGACATCTAGACTAAGAGAAAGAGGCTGTGATGGTTGCCTGGCAGGAATTGAAGTTCAA SKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQ|VLGRCFLTVVQVHFQFLTHALQKVQPVAHSCFAEVIVPEKKNSGSGGGLSGMGHTPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11522 KIF1B::UBE4B ENSG00000054523.20::ENSG00000130939.20 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1140 FALSE NA FALSE NA KIF1B ENSG00000054523.20 protein_coding + + chr1:10210570-10381603:+ chr1:10321857:+ chr1:10270628-10441661:+ chr1:10381915:+ UBE4B ENSG00000130939.20 protein_coding + + chr1:10032832-10181239:+ chr1:10072028:+ chr1:10092890-10241297:+ chr1:10132086:+ chr1:10323951,chr1:10323951 chr1:10063612,chr1:10063609 NA NA chr1:10384009,chr1:10384009 chr1:10123670,chr1:10123667 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FHA_domain(100%),Kinesin-associated(100%),Kinesin_motor_domain(100%)|U-box_domain(100%),Ubiquitin_elongating_factor_core(100%) FHA(100%),Kinesin(100%),Kinesin_assoc(100%),Microtub_bd(100%)|U-box(100%),Ufd2P_core(100%) 10 5 15 247 357 ENST00000676179.1 ENST00000672724.1 downstream upstream duplicates(73),mismatches(3) GACTCCTTCTGCTGAGACCCCCTCTGAGCCTGTGGACTGGACATTTGCCCAGAGGGAGCTTCTGGAAAAACAAGGAATTGATATGAAACAAGAGATGGAGAA...TGGAGATCTTATACAAAAAGGAGAAGGAAGAAGCAGATCTTCTTTTGGAGCAGCAGAGACTG___GACTATGAGAGTAAATTGCAGGCCTTGCAGAAGCAGGTTGAAACCCGATCTCTGGCTGCAGAAACAACTGAAGAGGAGGAAGAAGAGGAAGAAG___TTCCTTGGACACAGCATGAATTTGAGTTGGCCCAATGGGCCTTCCGGAAATGGAAGTCTCATCAGTTTACTTCATTACGGGACTTACTCTGGGGCAATGCCGTGTACCTAAAGGAGGCCAATGCCATCAGTGTGGAACTGAAAAAGAAG|ATTCGACGGAGGCGCCTTGCACGACTTGCTGGTGGACAGACCTCTCAGCCAACCACCCCACTCACCTCTCCCCAGAGGGAGAACCCTCCGGGGCCTCCCATAGCGGCATCAGCCCCAGGACCCTCTCAGAGTCTTGGTCTCAATGTCCACAACATGACCCCAGCTACCTCCCCAATAGGTGCATCAG___GAGTAGCCCATCGAAGCCAG EILYKKEKEEADLLLEQQRLDYESKLQALQKQVETRSLAAETTEEEEEEEEVPWTQHEFELAQWAFRKWKSHQFTSLRDLLWGNAVYLKEANAISVELKKK|IRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain,Kidney,Breast no_match TRUE Glioblastoma multiforme,Kidney renal clear cell carcinoma,Liver hepatocellular carcinoma CENTRAL_NERVOUS_SYSTEM,KIDNEY,LIVER no_match 10292492,10292492,10270936 FALSE,FALSE,FALSE 10238702,10231196,10238702 FALSE,FALSE,FALSE PARTIALLY,YES,YES Out-of-frame,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11528 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1141 TRUE 2032 TRUE 785 ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72375872:- chr10:74127098-74385889:- chr10:74135630:- chr10:72199990,chr10:72200023,chr10:72199995 chr10:72386552,chr10:72386471,chr10:72386554 NA NA chr10:73959748,chr10:73959781,chr10:73959753 chr10:74146310,chr10:74146229,chr10:74146312 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none KH_domain(71%)|EF-hand_domain_pair(100%) KH_1(53%)|EF-hand_8(82%) 3 4 16 382 497 ENST00000672957.1 ENST00000361114.10 upstream downstream duplicates(38),mismatches(1) AATTGATGGCCGGAATTACAGGAAGAATCCAGTCCAAGAACAGACCTATCAACATGAAGAAGATGAAGAGGACTTCTATCAAG___GCTCCATGGAGTGTGCTGATGAGCCCTGTGATGCCTACGAGGTGGcGCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTATAA___GCATATAGTTGGAAAGAGAGGGGACACTAGGAAGAAAATAGAAATGGAGACCAAAACTTCTATTAGCATTCCTAAACCTGGACAAGACGGGGAAATTG|TGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATG___GCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGG...GTCTCGGCAGAGCCCTTTGTGCTGCTGCTTCTGGAAGTAGTCCCCCTTCCTCCCGGGATGACCTCAGGACTCTGTCGGTTTCCCCTCTTTACCCTTCCCCGT IDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVaQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEI|vTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus no_match TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 TRUE,TRUE,TRUE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11529 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2032 TRUE 785 ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72379583:- chr10:74127098-74385889:- chr10:74139341:- chr10:72199990,chr10:72200023,chr10:72199995 chr10:72386552,chr10:72386471,chr10:72386554 NA NA chr10:73959748,chr10:73959781,chr10:73959753 chr10:74146310,chr10:74146229,chr10:74146312 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none KH_domain(71%)|EF-hand_domain_pair(100%) KH_1(53%)|EF-hand_8(82%) 0 1 16 382 15 ENST00000672957.1 ENST00000476605.7 upstream downstream duplicates(32),mismatches(1) GCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTATAA___GCATATAGTTGGAAAGAGAGGGGACACTAGGAAGAAAATAGAAATGGAGACCAAAACTTCTATTAGCATTCCTAAACCTGGACAAGACGGGGAAATTG|GAAAGGGCACCATCTTCATGGGGAGAAGATGAGTACTTGAAATATCA...AAGTGTTCATGTTTATCTAATACAGAACAGGTTCCGATCCCCTTCTCAGGACACATTTCTGTGGCAGCAAAGAGTAAAGCTGTAGGCAATCACAGTTTAAG QTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEI|gkgtifmgrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus no_match TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11530 SPAST::SLC30A6 ENSG00000021574.14::ENSG00000152683.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1142 FALSE NA FALSE NA SPAST ENSG00000021574.14 protein_coding + + chr2:32063556-32157637:+ chr2:32098891:+ chr2:32288625-32382706:+ chr2:32323960:+ SLC30A6 ENSG00000152683.14 protein_coding + + chr2:32165841-32224379:+ chr2:32220213:+ chr2:32390910-32449448:+ chr2:32445282:+ chr2:32104118,chr2:32104119 chr2:32211241,chr2:32211239 NA NA chr2:32329187,chr2:32329188 chr2:32436310,chr2:32436308 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 4 6 10 182 340 ENST00000315285.9 ENST00000282587.9 downstream upstream duplicates(32),mismappers(3),mismatches(2) AGGATGAGAAAG___CAGGACAGAAGGAGCAAGCTGTGGAATGGTATAAGAAAGGTATTGAAGAACTGGAAAAAGGAATAGCTGTTATAGTTACAGGACAAG___GTGAACAGTGTGAAAGAGCTAGACGCCTTCAAGCTAAAATGATGACTAATTTGGTTATGGCCAAGGACCGCTTACAACTTCTAG___AGAAGATGCAACCAGTTTTGCCATTTTCCAAGTCACAAACGGACGTCTATAATGACAGTACTAACTTGGCATGCCGCAATGGACATCTCCAGTCAG|GCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTCTACTCTAACTGTTCAAATTTTCAAGGATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGTCCTAAACTTTTCAGATCATCACGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTTACATCAACTCCAGCTAAACCTAGTAGTCCACCTCCAGAATTTTCATTTAACACTCCTGGGAAAAATGTGAACCCAGTTATTCTTCTAAACACACAAACAAGGCCTTATGGTTTTGGTCTCAATCATGGACACACACCTTACAGCAGCATGCTTAATCAAGGACTTGGAGTTCCAGGAATTGGAGCAACTCAAGGATTGAGGACTGGTTTTACAAATATACCAAGTAGATATGGAACTAATAATAGAATTGGACAACCAAGACCA DEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQLLEKMQPVLPFSKSQTDVYNDSTNLACRNGHLQS|gwisacknstrcq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11533 SEPTIN9::DNAH17 ENSG00000184640.20::ENSG00000187775.17 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEPTIN9 ENSG00000184640.20 protein_coding + + chr17:77280569-77500596:+ chr17:77320348:+ chr17:75276651-75496678:+ chr17:75316430:+ DNAH17 ENSG00000187775.17 protein_coding - + chr17:78423697-78577396:- chr17:78532236:+ chr17:76419778-76573478:- chr17:76528318:+ chr17:77347621,chr17:77347653,chr17:77347654,chr17:77347659,chr17:77347621 chr17:78527356,chr17:78527354,chr17:78527354,chr17:78527354,chr17:78527354 NA NA chr17:75343703,chr17:75343735,chr17:75343736,chr17:75343741,chr17:75343703 chr17:76523438,chr17:76523436,chr17:76523436,chr17:76523436,chr17:76523436 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 0 12 6 121 59 ENST00000329047.13 unknown downstream upstream duplicates(29),low_entropy(1),mismatches(1) AGGGCGACGGGGGTGAGAAAGGGGAGGCCGCCTCTGAGCGGGACGCCGGGACTCCCGCCGCTGCTAAATATATCCGTAGGAATGGAGAGGGACCGGATCTCAG|CTCCCTCTGCCTCCTGACTGACCCTGATGCTACCCCGTGCAGGCCTGTGTGGTGTGCTATGCCCCCTTCTTGGGAACTGTAAGTAACAAACTGCCTTTCTAATGGTGGTCACCTCCTGATGTTTGCCTTGCCCTACCTGGAAACCTGCATCTTAAAACAAT...AAGTTTTAAAGCAAGCCTGGTGATCCTCTCCTGGAAGACTCTGGAGACAAGGAGGCTGGTGGGTGAGGTCTGCACGCACCTGCTCCTGGAACTGAGCCAGG...GATGACCAGGCTGGACACCTCCTCCCTCATCTCTATGAG___CGGGTTGGCCGACCAGTCCTGGAAGGAAAGCACAGGAGTGAGAAAAGGTGTTCTGGAGAAACTGCTTTCAGTCGCAGTCCTTTGCT MERDRIS|apsas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE septin 9 2 AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11534 SMURF1::ARPC1A ENSG00000198742.10::ENSG00000241685.10 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMURF1 ENSG00000198742.10 protein_coding - - chr7:99027440-99144108:- chr7:99035515:- chr7:98625063-98741731:- chr7:98633138:- ARPC1A ENSG00000241685.10 protein_coding + - chr7:99325898-99366262:+ chr7:99330939:- chr7:98923521-98963885:+ chr7:98928562:- chr7:99033519,chr7:99033519,chr7:99033522 chr7:99333597,chr7:99333593,chr7:99333597 NA NA chr7:98631142,chr7:98631142,chr7:98631145 chr7:98931220,chr7:98931216,chr7:98931220 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none C2_domain(100%),HECT-domain_(ubiquitin-transferase)(80%),WW_domain(100%)| C2(100%),HECT(57%),WW(100%)| 7 4 7 503 41 ENST00000361368.7 unknown upstream downstream duplicates(45),mismatches(3) GTTGTATGTAAACTGGAGGTTTATGAGAGGAATCGAAGCCCAGTTCTTAGCTCTGCAGAAGGGGTTCAATGAGCTCATCCCTCAACA?CTGCTGAAGCCTTTTGACCAGAAGGAACTGGAG___CTGATCATAGGCG...CCTGGATAAAATAGACTTGAACGACTGGAAGTCGAACACGCGGCTGAAGCACTGTGTGGCCGACAGCAACATCGTGCGGTGGTTCTGGCAAGCGGTGGAGACGTTCGATGAAGAAAGGAGGGCCAGGCTCCTGCAGTTTGTGACTGGGTCCACGCGAGTCCCGCTCCAAGGCTTCAAGGCTTTGCAAG|GTACCCAAATCTAGATACACTTGAAGAAGCAACCATTAACTGAAATGGGAACATTTTTCAAAAAGCAGCCAGCCTTCCTCTACCCCCAACTTTATCATTTCCAGGAGGCACCCTCACAATAAACTCAAGTTTCAACACACGTAAGTATGTGTCATGTTAACCTTGGGTGGAGGCTGAAATGTGAGATATGAATTCTGATGCAAGCAGGAAATGAATGGAAGG LDKIDLNDWKSNTRLKHCVADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQ|gtqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11535 SMURF1::ENSG00000284292 ENSG00000198742.10::ENSG00000284292.1 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMURF1 ENSG00000198742.10 protein_coding - - chr7:99027440-99144108:- chr7:99035515:- chr7:98625063-98741731:- chr7:98633138:- ENSG00000284292 ENSG00000284292.1 protein_coding + - chr7:99325879-99394653:+ chr7:99330939:- chr7:98923502-98992276:+ chr7:98928562:- chr7:99033519,chr7:99033519,chr7:99033522 chr7:99333597,chr7:99333593,chr7:99333597 NA NA chr7:98631142,chr7:98631142,chr7:98631145 chr7:98931220,chr7:98931216,chr7:98931220 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none C2_domain(100%),HECT-domain_(ubiquitin-transferase)(80%),WW_domain(100%)| C2(100%),HECT(57%),WW(100%)| 7 4 7 503 41 ENST00000361368.7 unknown upstream downstream duplicates(45),mismatches(3) GTTGTATGTAAACTGGAGGTTTATGAGAGGAATCGAAGCCCAGTTCTTAGCTCTGCAGAAGGGGTTCAATGAGCTCATCCCTCAACA?CTGCTGAAGCCTTTTGACCAGAAGGAACTGGAG___CTGATCATAGGCG...CCTGGATAAAATAGACTTGAACGACTGGAAGTCGAACACGCGGCTGAAGCACTGTGTGGCCGACAGCAACATCGTGCGGTGGTTCTGGCAAGCGGTGGAGACGTTCGATGAAGAAAGGAGGGCCAGGCTCCTGCAGTTTGTGACTGGGTCCACGCGAGTCCCGCTCCAAGGCTTCAAGGCTTTGCAAG|GTACCCAAATCTAGATACACTTGAAGAAGCAACCATTAACTGAAATGGGAACATTTTTCAAAAAGCAGCCAGCCTTCCTCTACCCCCAACTTTATCATTTCCAGGAGGCACCCTCACAATAAACTCAAGTTTCAACACACGTAAGTATGTGTCATGTTAACCTTGGGTGGAGGCTGAAATGTGAGATATGAATTCTGATGCAAGCAGGAAATGAATGGAAGG LDKIDLNDWKSNTRLKHCVADSNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKALQ|gtqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11536 GON4L::ARHGEF2 ENSG00000116580.20::ENSG00000116584.22 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1144 TRUE 2033 TRUE 786 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155763312:- chr1:155719450-155829191:- chr1:155733103:- ARHGEF2 ENSG00000116584.22 protein_coding - - chr1:155946851-156007070:- chr1:155963183:- chr1:155916642-155976861:- chr1:155932974:- chr1:155763233,chr1:155763233,chr1:155763242 chr1:155963873,chr1:155963872,chr1:155963873 NA NA chr1:155733024,chr1:155733024,chr1:155733033 chr1:155933664,chr1:155933663,chr1:155933664 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(100%),RhoGEF_domain(98%) |PH_16(100%),RhoGEF(42%) 4 0 12 293 576 ENST00000615926.4 ENST00000673475.1 upstream downstream duplicates(36),mismatches(3) CAGAACTCCAG___GAAACAATGGAGAAACTGACTTGGCTGGCATCTGAAAGGCGCATGAGTCAGGAGGGTGAGTCTGAAGAAGAGAATTCTCAGGAGGAGAA...GAAGAAGAGGAGGAAGAAGAAGCAGAAGGAATGGAAAGCCTGCAGAAAGAGGATGAAATGACGGATGAAGCAGTTGGAGACTCTGCTGAGAAGCCTCCTACTTTTGCTTCACCTGAGACTGCTCCAGAAGTGGAGACCAGCAGAACTCCACCAG|AGCTAATCCAGACAGAGCTGCACCATGTGAGGACACTGAAGATCATGACCCGCCTCTTCCGCACGGGGATGCTGGAAGAGCTACACTTGGAGCCAGGAGTGGTCCAGGGCCTGTTCCCCTGCGTGGACGAGCTCAGTGACATCCATACACGCTTCCTCAGCCAGCTATTAGAACGCCGACGCCAGGCCCTGTGCCCTGGCAGCACCCGGAACTTTGTCATCCATCGCTTGGGTGATCTGCTCATCAGCCAG___TTCTCAGGTCCTAGTGCGGAGCAGATGTGTAAGACCTACTCGGAG EEEEEEEAEGMESLQKEDEMTDEAVGDSAEKPPTFASPETAPEVETSRTPP|eLIQTELHHVRTLKIMTRLFRTGMLEELHLEPGVVQGLFPCVDELSDIHTRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQMCKTYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6738 chr1:155951273-155951336:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Breast,Uterus_cervix,Adrenal,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma,Bladder Urothelial Carcinoma CERVIX,BLADDER no_match 155746186,155823067 FALSE,FALSE 155939091,155922619 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11537 GON4L::ARHGEF2 ENSG00000116580.20::ENSG00000116584.22 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2033 TRUE 786 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155804949:- chr1:155719450-155829191:- chr1:155774740:- ARHGEF2 ENSG00000116584.22 protein_coding - - chr1:155946851-156007070:- chr1:155948015:- chr1:155916642-155976861:- chr1:155917806:- chr1:155763233,chr1:155763233,chr1:155763242 chr1:155963873,chr1:155963872,chr1:155963873 NA NA chr1:155733024,chr1:155733024,chr1:155733033 chr1:155933664,chr1:155933663,chr1:155933664 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 1 0 0 377 522 ENST00000615926.4 ENST00000673475.1 upstream downstream duplicates(4) GCACATCAGTGCTGAGGTAGTGCCCATGGGGCCCCCGCCCCCTCCAAAGCCGAAACAGACCAGAGATAGTACTTTCATGGAGAAGTTACATGCGGTAGATG...TGACCCCAATACGGCAGATGATGAGGACTGGAAGATGTGGCTGGGGGGACTTATGAATGATGATGTGGGGAATGAAG|ACTTTACCAGAATGCAGGACATCC DPNTADDEDWKMWLGGLMNDDVGNE|dFTRMQDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Breast,Uterus_cervix,Adrenal,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma,Bladder Urothelial Carcinoma CERVIX,BLADDER no_match 155746186,155823067 FALSE,FALSE 155939091,155922619 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11538 TRIOBP::LGALS1 ENSG00000100106.22::ENSG00000100097.12 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1145 FALSE NA FALSE NA TRIOBP ENSG00000100106.22 protein_coding + + chr22:37697048-37776556:+ chr22:37771736:+ chr22:38093055-38172563:+ chr22:38167743:+ LGALS1 ENSG00000100097.12 protein_coding + + chr22:37675636-37679802:+ chr22:37676986:+ chr22:38071643-38075809:+ chr22:38072993:+ chr22:37771994,chr22:37771993 chr22:37676031,chr22:37676027 NA NA chr22:38168001,chr22:38168000 chr22:38072038,chr22:38072034 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PH_domain(100%)|Galactoside-binding_lectin(100%) PH(100%)|Gal-bind_lectin(100%) 3 4 7 114 157 ENST00000644935.1 ENST00000215909.10 downstream upstream duplicates(22) CTCCGGAAGCAGCACCA___GTCAGATGTGGAGGCACTGAAGCGAGAGCTGCAGGTGCTATCGGAGCAGTACTCGCAGAAGTGCCTGGAGATTGGGGCACTCAT...CGCGAGCACACGCTGCGCCGCTGCCAGCAGGAGGGCCAGGAGCTGCTGCGCCACAACCAG___GAGCTGCATGGCCGCCTGTCAGAGGAGATAGACCAGCTGCGCGGCTTCATTGCCTCGCAGGGCATGGGCAATGGCTGCGGGCGCAGCAACGAGCGGAGTTCCTGCGAGCTAGAG___GTGCTGCTTCGCGTAAAAGAAAACGAACTCCAGTACCTAAAGAAGGAGGTGCAGTGCCTCCGGGACGAGCTCCAGATGATGCAGAAG|GGTCTGGTCGCCAGCAACCTGAATCTCAAACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAGAG___CTTCGTGCTGAACCTGGGCAAAGACAGCAACAACCTGTGCCTGCACTTCAACCCTCGCTTCAACGCCCACGGCGACGCCAACACCATCGTGTGCAACAGCAAGGACGGCGGGGCCTGGGGGACCGAGCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTGCAG REHTLRRCQQEGQELLRHNQELHGRLSEEIDQLRGFIASQGMGNGCGRSNERSSCELEVLLRVKENELQYLKKEVQCLRDELQMMQK|GLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11540 ARPC1A::TRRAP ENSG00000241685.10::ENSG00000196367.15 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:99047655:+ chr7:98475556-98648454:+ chr7:98645278:+ chr7:99333597,chr7:99333597,chr7:99333593 chr7:99033522,chr7:99033519,chr7:99033519 NA NA chr7:98931220,chr7:98931220,chr7:98931216 chr7:98631145,chr7:98631142,chr7:98631142 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none |WW(100%) 4 1 7 716 39 ENST00000262942.10 ENST00000468960.3 downstream upstream duplicates(14),mismatches(1) CCCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GGTCTGGGCAGTGGCCCTGAACTCTCTACCTCAAAGATTTCTTCTCTGGACACTTCGATGCGGCAATGACCAGCTTGGGGCTGCTGAAGCGACAGTTCGTGTCTGAGGACTTTCAGCTTCTGGACTAGATCTCTTTCGTATCTCTGGGCAGGAAGCTCCTCGTCCTCCAGAGAGCCCTCACTGGGCAGTGGCAGCGGCTGGCTGGGCTCCTTGAGTTGGCACTGGTGACTTGAGAAGAAaAGATG...AGAATTTGTTTCCCTGATGACGTAACCAGGTACCTAGCTtGCTGTGTCAAACTTGCTctTGGCCACATTAGCCTAAATGTATGTCTACAGTACCATAAAGG MSLHQFLLEPITCHAWNRDRT|rsgqwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 TRUE Prostate no_match TRUE Prostate adenocarcinoma PROSTATE no_match 98931040 TRUE 98579392 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 11541 ENSG00000284292::TRRAP ENSG00000284292.1::ENSG00000196367.15 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284292 ENSG00000284292.1 protein_coding + + chr7:99325879-99394653:+ chr7:99333417:+ chr7:98923502-98992276:+ chr7:98931040:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:99047655:+ chr7:98475556-98648454:+ chr7:98645278:+ chr7:99333597,chr7:99333597,chr7:99333593 chr7:99033522,chr7:99033519,chr7:99033519 NA NA chr7:98931220,chr7:98931220,chr7:98931216 chr7:98631145,chr7:98631142,chr7:98631142 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none |WW(100%) 4 1 7 716 39 ENST00000638617.1 ENST00000468960.3 downstream upstream duplicates(14),mismatches(1) CCCGCGCCCGACGGAGCCTGTTCGCGTCGACTGCCCAGAGTCCGCGAATCCTCCGCTCCGAGCCCGTCCGGACTCCCCCGATCCCAG___CTTTCTCTCCTTTGAAAACACTAAGAATAATGTCACTGCATCAGTTTTTACTAGAGCCAATCACCTGTCATGCCTGGAACAGGGATCGTACTC|GGTCTGGGCAGTGGCCCTGAACTCTCTACCTCAAAGATTTCTTCTCTGGACACTTCGATGCGGCAATGACCAGCTTGGGGCTGCTGAAGCGACAGTTCGTGTCTGAGGACTTTCAGCTTCTGGACTAGATCTCTTTCGTATCTCTGGGCAGGAAGCTCCTCGTCCTCCAGAGAGCCCTCACTGGGCAGTGGCAGCGGCTGGCTGGGCTCCTTGAGTTGGCACTGGTGACTTGAGAAGAAaAGATG...AGAATTTGTTTCCCTGATGACGTAACCAGGTACCTAGCTtGCTGTGTCAAACTTGCTctTGGCCACATTAGCCTAAATGTATGTCTACAGTACCATAAAGG MSLHQFLLEPITCHAWNRDRT|rsgqwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 11544 PPP1R9A::SEM1 ENSG00000158528.12::ENSG00000127922.10 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2034 TRUE 787 PPP1R9A ENSG00000158528.12 protein_coding + + chr7:94907202-95296415:+ chr7:94911508:+ chr7:94536514-94925727:+ chr7:94540820:+ SEM1 ENSG00000127922.10 protein_coding - - chr7:96481626-96709880:- chr7:96558256:- chr7:96110938-96339192:- chr7:96187568:- chr7:94987535 chr7:96607881 NA NA chr7:94616847 chr7:96237193 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none PDZ_domain(21%)|Family_of_unknown_function_(DUF5543)(100%) PDZ_5(0%)|DSS1_SEM1(25%),DUF5543(100%) 0 1 8 260 27 ENST00000433360.6 ENST00000618105.4 downstream downstream duplicates(30) TGAAGATTCAAATAATTTTGATGGTTCCCATGTGTACATGCACAGTGACTATAATGTGTATAGGGTGAGATCCAGGTATAATTCAGACTGGGGAGAGACAGGCACTGAGCAGGATGAGGAGGAAGATAGTGATGAGAACAGTTACTATCAGCCTGATATGGAGTACTCGGAAATTGTTGGATTGCCAGAAGAAGAAGAAATCCCAGCAAATAGGAAAATTAAGTTTAGTAGTGCTCCTATTAAG|CCATGGACATGCATCAGCTGGTCTCCTTCAAGAGAAACTCCTGGGGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGATGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACcAGGGA EDSNNFDGSHVYMHSDYNVYRVRSRYNSDWGETGTEQDEEEDSDENSYYQPDMEYSEIVGLPEEEEIPANRKIKFSSAPIK|pwtciswspsretpgggakmae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11545 PPP1R9A::SEM1 ENSG00000158528.12::ENSG00000127922.10 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2034 TRUE 787 PPP1R9A ENSG00000158528.12 protein_coding + + chr7:94907202-95296415:+ chr7:94911508:+ chr7:94536514-94925727:+ chr7:94540820:+ SEM1 ENSG00000127922.10 protein_coding - - chr7:96481626-96709880:- chr7:96506698:- chr7:96110938-96339192:- chr7:96136010:- chr7:94987535 chr7:96607881 NA NA chr7:94616847 chr7:96237193 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none PDZ_domain(21%)|Family_of_unknown_function_(DUF5543)(100%) PDZ_5(0%)|DSS1_SEM1(0%),DUF5543(100%) 0 1 2 260 7 ENST00000433360.6 ENST00000619259.4 downstream downstream duplicates(13) CACTGAGCAGGATGAGGAGGAAGATAGTGATGAGAACAGTTACTATCAGCCTGATATGGAGTACTCGGAAATTGTTGGATTGCCAGAAGAAGAAGAAATCCCAGCA...GGAAAATTAAGTTTAGTAGTGCTCCTATTAAG|ATCCCAAAATGGGTAGGCTCTGTTTGACCTTGTGGAATTGTTGAAGATGCAGTTCTCAACAGCATCACTAGATGTT___AGAAACAAATACATCAGATGATGCTATGCAGCTCTGAAGGAAGAACATGTATTGCCAG___GAGGAAAAGTGGGAAGAAAGCATGGCATAAAAAGGGGGAGGAGACCCAGC KIKFSSAPIK|ipkwvgsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11549 PLEKHA5::ENSG00000255648 ENSG00000052126.17::ENSG00000255648.1 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHA5 ENSG00000052126.17 protein_coding + + chr12:19129669-19376400:+ chr12:19132450:+ chr12:19282603-19529334:+ chr12:19285384:+ ENSG00000255648 ENSG00000255648.1 lncRNA + + chr12:18714795-18737878:+ chr12:18737514:+ chr12:18867729-18890812:+ chr12:18890448:+ chr12:19184548,chr12:19184549 chr12:18715779,chr12:18715777 NA NA chr12:19337482,chr12:19337483 chr12:18868713,chr12:18868711 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none WW_domain(81%)| WW(0%)| 1 3 3 210 41 ENST00000706615.1 ENST00000536931.1 downstream upstream duplicates(19),mismatches(1) GGGCGGCCGAGTCTTCTTCATCAA___CGAGGAGGCCAAGAGCACCACCTGGCTGCACCCCGTCACCGGCGAGGCGGTGGTCACCGGACACCGGCGGCAGAGCACAG___ATTTGCCTACTGGCTGGGAAGAAGCATATACTTTTGAAGGTGCAAGATACTATATAAA|GGAGAAAGCAGAGAACACACAGTGGTTTTTTTTGCCTTCGTTCTTTGAAGCTAGCTCACACTTAACCATAGAAACAGTATGCAAGATGTGGTACCTGCACTACCCTGCCCTTGAAACTGTTTGGCTTCTTACGTTCTGACCACCTCCAAACCCACAATATTTGAAAACACAGCTTTCCCTGATGTCTGGCATTTTTCCATGAACTGCCATTGTATCTCCTTTTATTTTTTACTACTTTGTTTAAACCCCTCAAACCTTTCATCATAATATGCTTCCAGTGGGTTTGGG...TCAGAGGTTCCACACTTCACAAGGAAAGCTTCTTATGACCTCATCAGGAGGCTCAGACCTTGCCAGACTGCCTGCTTTCATGGATAGACATAAAAACCTTC GGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFEGARYYIk|ekaentqwfflpsffeasshltietvckmwylhypaletvwlltf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11551 BOLA3::CCDC142 ENSG00000163170.12::ENSG00000135637.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1147 TRUE 2036 FALSE NA BOLA3 ENSG00000163170.12 protein_coding - - chr2:74135400-74147912:- chr2:74142272:- chr2:74362527-74375039:- chr2:74369399:- CCDC142 ENSG00000135637.14 protein_coding - - chr2:74471986-74483408:- chr2:74472796:- chr2:74699113-74710535:- chr2:74699923:- chr2:74138405,chr2:74138410 chr2:74473584,chr2:74473586 NA NA chr2:74365532,chr2:74365537 chr2:74700711,chr2:74700713 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none BolA-like_protein(60%)| BolA(30%)|MRP_L53(100%) 3 0 3 52 60 ENST00000327428.10 ENST00000454193.5 upstream downstream duplicates(11) GCCGCGGCAGCGCCTCTCCcCCGCGGGATCCGCGGG___CTTCCACTTCACCATCGGATGTTTGCCACTCAGACTGAGGGGGAGCTCAGAGTGACCCAAATTCTCAAAGAAAAGTTTCCACGAGCTACAGCTATAAAAGTCACTGACATTTCAG___GAGGTTGTGGGGCGATGTATGAAATTAAAATTGAATCAGAAGAATTTAAGGAGAAGAGAACTGTCCAGCAGCACCAGATGGTTAATCAG|GAAGCCCAGAGCTGCGGTTCGCAGGCCTGCTAAGCAGCCGGCGGCCGGAAGTCTATCCCGCAGAAGCGCAGCCATTCACGGCCTCACGCAATGCGACACTTCCGCCTGCACGAGTTCTTCC AAAAPLpRGIRGLPLHHRMFATQTEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQ|eaqscgsqac* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11553 GMCL1::AAK1 ENSG00000087338.5::ENSG00000115977.21 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69861347:+ chr2:70056792-70108516:+ chr2:70088479:+ AAK1 ENSG00000115977.21 protein_coding - + chr2:69457997-69674349:- chr2:69580327:+ chr2:69685129-69901481:- chr2:69807459:+ chr2:69863978 chr2:69574146 NA NA chr2:70091110 chr2:69801278 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none BTB/POZ_domain(100%),BTB_And_C-terminal_Kelch(100%)| BACK(100%),BTB(100%)| 0 1 5 372 18 ENST00000282570.4 unknown downstream upstream duplicates(12) GCTTCTGCAAGAATTATTGAACAAGATGCTGTAGTACCTTCAG___AATGGCTCTCTTCTGTGTATAAACAGCAGTGGTTTGCTATGCTGCGGGCAGAACAGGACAGTGAGGTGGG|ACTTCATGGGACCATCATGGACATCTGATCCACACCAGGCAACTCAGATTCgTTCCTGGAAAAGTGGAATTTGGTATA...TGCACGGAAACCATATGGTGCCATAGGAATATTAAACAGAGAAAGTCTATCTGCATTAAAAAAGAAGACCAAAGCAGAAGCAGAAAAAAAGCAGAGATGAG ASARIIEQDAVVPSEWLSSVYKQQWFAMLRAEQDSEVg|lhgtimdi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11554 SMARCA4::MOCS2-DT ENSG00000127616.22::ENSG00000247796.3 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10961174:+ chr19:11071608-11190102:+ chr19:11071850:+ MOCS2-DT ENSG00000247796.3 lncRNA + - chr5:53109816-53127673:+ chr5:53118302:- chr5:52405646-52423503:+ chr5:52414132:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 3 2 0 87 68 ENST00000644737.1 unknown downstream downstream duplicates(6) CGGGCGGGCGCGCGCGCGAGGCTTCCCCTCGTTTGGCGGCGGCGGCGGCTTCTTTGTTTCGTGAAGAGAAGCGAGACGCCCATTCTGCCCCCGGCCCCGCGCGGAGGGGCGGGGGAGGCGCCGGGAAGTCGACGGCGCCGGCGGCTCCTG|GTGGTACTTCTGGGGAACCAGGCCTAAGGTAATTCAGCATACTGTAATATTCACCTCTTAAGTTAAAATGC...CTATAACCATAATTTCCATGTTTATTTAAACTTGGTTGTATATTTAAATAGTTCGGTTTGCCATTGGTCTTTTTTACAATGGCTTTCACTTCAATTCCTGTTTGATTAGATTTTATTATATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 11556 MAILR::PVT1 ENSG00000253320.7::ENSG00000249859.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAILR ENSG00000253320.7 lncRNA + + chr8:102864271-103002424:+ chr8:102904385:+ chr8:103876499-104014652:+ chr8:103916613:+ PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127841229:- chr8:128806772-129199347:+ chr8:128853475:- chr8:102914598,chr8:102914589,chr8:102914598,chr8:102914598 chr8:127842372,chr8:127842381,chr8:127842483,chr8:127842510 NA NA chr8:103926826,chr8:103926817,chr8:103926826,chr8:103926826 chr8:128854618,chr8:128854627,chr8:128854729,chr8:128854756 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' high none none none 1 1 3 32 32 ENST00000519181.5 unknown downstream downstream duplicates(10) GCAAGCCTTGTGAATGAGCTTGGAAGCAGATCCTCCCCTCACTCAAGCCATGATATGACAACAGCCTGAGACCCAGAG___TTCTGCATGGCTGGAGAGGCCTC...CATTTCCCACCCCAACCTGCAAAAGGTAACCACTGGATGGGCCCGGTGGCTCACACCTGTAATCCCAGCATCTTGGGAGGCCAAG|GCCAACAAGAGGTGGATGAAGATCTAACCCTGAGCTGAAAGGGAATCTGCTGAACAG___GACTGAGGACTCAAAGACAGCAAGCATTGTTTCCCAAACCATCGATTCCCGGAGCAAGCTTTGGGGCACACAAAG___GCTGGCTtGCATGAGGCACGTAGTCTGGACTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11557 CASC19::ENSG00000254024 ENSG00000254166.4::ENSG00000254024.1 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- ENSG00000254024 ENSG00000254024.1 lncRNA - - chr8:101461177-101492499:- chr8:101461617:- chr8:102473405-102504727:- chr8:102473845:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 2 1 1 63 32 ENST00000641912.1 ENST00000520268.1 upstream downstream duplicates(10) CAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|AGCCTTTATGACCGAAGATGGAACTGAAATGCCATCCTGTTATCAAGAAGGAGCATAAGAACAGCTAGAGGAGAGATGCAAGATTGAAATATCATGGAATGGACTATGGTTTATCCTCTCTTCTGGTCGTAAAAC...AGGTTGTAATTGTTCAGATCAGAAATTCCCAAGCTTTTAATAAAGCCTTCAGGGAGCCTCATCCAGGGGCAACTGCCCTGTCATTGGGAATAAGTAGAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11558 PLPPR3::SBNO2 ENSG00000129951.19::ENSG00000064932.16 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLPPR3 ENSG00000129951.19 protein_coding - - chr19:812488-821955:- chr19:814434:- chr19:812488-821955:- chr19:814434:- SBNO2 ENSG00000064932.16 protein_coding - - chr19:1107637-1174268:- chr19:1112537:- chr19:1107636-1174267:- chr19:1112536:- chr19:814062,chr19:814067 chr19:1112912,chr19:1112914 NA NA chr19:814062,chr19:814067 chr19:1112911,chr19:1112913 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PAP2_superfamily(100%)|C-terminal_domain_on_Strawberry_notch_homologue(77%) PAP2(100%)|Helicase_C_4(72%) 1 1 2 60 268 ENST00000520876.8 ENST00000361757.8 upstream downstream duplicates(4),mismatches(1) CACAGCCCTGGTGACGGACGTGATCCAGCTGGCCACGGGTTACCACACTCCCTTCTTCCTCACCGTCTGCAAGCCCA------CTCTCCTGGGCACGTCCTGCGAGG...CTGAAGCCCATCCTGGTCTTCGCCTTTGCCATCGCCGCGGGCGTATGCGGGCTCACGCAGATCACGCAGTACCGCAGCCACCCTGTGGACGTGTATGCCGG...CGGGCATCGCTGCCTACCTG|CTCGTGGCCATCATCTCGGAGGCCTCCAGCTCGGGTGTCTCCCTCCAAGCCGACCGCCGTGTCCAGAACCAGCGGCGCCGCGTGCACATGACCTTGGAGCTGCCGTGGAGCGCCGACCGCGCCATCCAGCAGTTCG___GCCGCACCCACCGGTCCAACCAGGTCTCCGCGCCAGAGTATGTCTTCCTCATCTCGGAGCTGGCCGGGGAGCGCCG GIAAYL|LVAIISEASSSGVSLQADRRVQNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11560 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36298000:+ chr18:33877676-34360183:+ chr18:33877963:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36248922:+ chr18:33767460-33852120:+ chr18:33828885:+ chr18:36343992 chr18:36245914 NA NA chr18:33923955 chr18:33825877 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Formin_N-terminal_GTPase-binding_domain(51%)|MOSC_N-terminal_beta_barrel_domain(40%),MOSC_domain(100%) Formin_GBD_N(0%)|MOSC(100%),MOSC_N(6%) 2 1 1 117 32 ENST00000590592.6 ENST00000261326.6 downstream upstream duplicates(3) GAGCCAGCGAGCTGCGGCTGCGGCCTCCCCTGCGCGCAGCTACCCGGGCGTCCCGGCCCGCGGCCCCGCTAACCCCGGGGCCCGCGCCCCCGCGGCAGGGA...GCTGGCTTGCCGGGTGCAGTTCTTGGACGACACGGACCCTTTCAACAGCACCAACTTCCCCGAGCCCAGCCGGCCGCCGCTGTTCACGTTCCGCGAGGACCTCGCGCTCGGCACCCAGCTGGCGGGGGTCCATAGGCTGCTGCAGGCGCCGCACAAG|GGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTGTGCTGACAG___AGTAAGTACTTATGATTGTGGAG...CATTTTTTGGCCGTCCTTGTaATTTGATCAAACAAAGTTCAAACTCTCAAAGGAATGCAAAGAAGAAACATGGAAAAG___ATCAACTTCCTGGTACAATGaCC LACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHK|gwsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,TRUE,TRUE|TRUE 33836931,33828885,33836931|33846712 FALSE,TRUE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11562 INPP5A::JAKMIP3 ENSG00000068383.19::ENSG00000188385.13 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA INPP5A ENSG00000068383.19 protein_coding + + chr10:132537787-132783480:+ chr10:132607956:+ chr10:134351291-134596984:+ chr10:134421460:+ JAKMIP3 ENSG00000188385.13 protein_coding + + chr10:132036336-132184858:+ chr10:132182357:+ chr10:133849840-133998362:+ chr10:133995861:+ chr10:132626891,chr10:132626892 chr10:132179654,chr10:132179652 NA NA chr10:134440395,chr10:134440396 chr10:133993158,chr10:133993156 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none none Exo_endo_phos(28%)| 0 2 1 79 6 ENST00000368594.8 ENST00000668452.1 downstream upstream duplicates(2) CCGCGGTGCTGCTGGTCACGGCCAACGTGGGCTCGCTCTTCGACGAC___CCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAG|AGAGGAAGCAGTGCATTGGTGAAGGCAACGTTAGGTGTGATTTCCATTCCTGCTGGGAGACC...CCATTTCGAGGCACCTAGAAGTTGAGGCAGCCAGCTGTGCAGCCAGGTGTGACTGTTACTGGCAGCATTGTATAAAAGACACGACTCAGCTGCCGTAGGG...AGGGAAAAGCTAATAGTATCAGACAGATATGCTTTTTCTTTGGTGGCTGCAGGATTTTTGCTGGAAAATGCACTATTAATCAGCACTTGTCCAAGAAAGAC AVLLVTANVGSLFDDPENLQKNWLREFYQ|rgssalvkatlgvisipagr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 134503959 FALSE 133950523 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11563 ITPR2::ENSG00000256226 ENSG00000123104.12::ENSG00000256226.1 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR2 ENSG00000123104.12 protein_coding - - chr12:26335352-26833194:- chr12:26790157:- chr12:26488285-26986127:- chr12:26943090:- ENSG00000256226 ENSG00000256226.1 lncRNA - - chr12:27105151-27161393:- chr12:27105258:- chr12:27258084-27314326:- chr12:27258191:- chr12:26745852,chr12:26745856 chr12:27113219,chr12:27113220 NA NA chr12:26898785,chr12:26898789 chr12:27266152,chr12:27266153 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(22%)| Ins145_P3_rec(36%)| 0 1 2 53 4 ENST00000381340.8 ENST00000538920.1 upstream downstream none CGGAGGGCTCGGTCAACGGCTTCATCAGCACCTTGGG___GTTAGTGGATGACAGATGTGTGGTGCACCCAGAGGCCGGGGACCTTGCCAACCCTCCCAA?AAGTTCAGAG|a|CCTtCCAACCTAATGTATGCAGGCTACATGGACTGCTTCCT...CAGTTCTGGGATATGTATACCTATAGGAAGACAGGAGTGAGCAACAGCTACTCATAGTTCTGAAGAAGAAAAGAATAACAAATTCCTATACACAAGCACCTTCTAAAGGAATGTTTTATAAATCGTGGGTCACAACTGCTAAAATTGGAACATACTGAAATAGAATTAATAGATTGAAATCAGCATTTCTTTGTATTAAAcAGACAACAAAAGAGTAGTcCATCgGAAGTAAAG EGSVNGFISTLGLVDDRCVVHPEAGDLANPP?KFR|d|lpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11582 LSM14A::GPI ENSG00000257103.9::ENSG00000105220.17 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34196763:+ chr19:34663409-34720193:+ chr19:34687668:+ GPI ENSG00000105220.17 protein_coding + + chr19:34359480-34402413:+ chr19:34364810:+ chr19:34850385-34893318:+ chr19:34855715:+ chr19:34201415,chr19:34201414 chr19:34361794,chr19:34361790 NA NA chr19:34692320,chr19:34692319 chr19:34852699,chr19:34852695 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none Scd6-like_Sm_domain(100%)|Phosphoglucose_isomerase(100%) LSM14(100%),SM-ATX(100%)|PGI(100%) 3 3 8 834 54 ENST00000544216.8 ENST00000587384.6 downstream upstream duplicates(22) ATTAAAGACCTTACTGTTTGTGAGCCACCAAAACCACAGTGTTCTTTGCCTCAAGACCCAGCTATTGTTCAG___TCCTCACTAGGCTCATCGACTTCTTCATTCCAGTCCATGGGTTCTTATGGACCTTTCGGCAGGATGCCCACATACAGTCAGTTCAGTCCGAGTTCCTTAGTTGGGCAGCAGTTTGGTGCTGTTGGTGTTG|CGCCTAGAACACTGCCTGTAACGTGGAAGGTGTTCGATCTATAGAGTTTTGTCGAATGAATGAATGAAGCCGACTAGTGCACAGGGAGTGCAGCGGCGCGATGGTAGCTCTCTGCAGCCTCCAACACCTGGGCTCCAGTGATCCCCGGGCTCTGCCC?CCCTCCCCACTGCCACTTCCGGGCAGAGGCCAGCAAAGCGGCGGCGCAAGAG___TCCCGCCATGGCCGCTCTCACCCGGGACCCC IKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSSLVGQQFGAVGV|aprtlpvtwkvfdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 11610 SPRTN::DISC1 ENSG00000010072.16::ENSG00000162946.24 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1148 FALSE NA FALSE NA SPRTN ENSG00000010072.16 protein_coding + + chr1:231337104-231355023:+ chr1:231338604:+ chr1:231472850-231490769:+ chr1:231474350:+ DISC1 ENSG00000162946.24 protein_coding + + chr1:231626790-232041272:+ chr1:231693826:+ chr1:231762536-232177018:+ chr1:231829572:+ chr1:231339200,chr1:231339194 chr1:231649946,chr1:231649937 NA NA chr1:231474946,chr1:231474940 chr1:231785692,chr1:231785683 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none SprT-like_family(26%)| SprT-like(0%),Vps51(100%)| 3 2 2 99 30 ENST00000391858.8 ENST00000439617.8 downstream upstream duplicates(16),mismatches(1) GGAGAGGCCGAGAGAAATTTCGGTACTGCGCATGAACCGAGCGTGACGTTGAGGTTTGAAATAACCGGCAAAGAGTAAAGGCTGAAACTAGCTTCCTGAAA...CGCGTTTCCGCGAACTCTCGCGGGATTGACGGGCCGTCTCGAGAGCCGGCATCTCCTAGGAGCTAGTCCTGGTCCTCGGCTAGGCGGCTTGGGGTCGCGGC...ACCCCACACCGGACTTGCAGGCACTGTTTGTTCAGTTTAACGACCAATTCTTCTGGGGCCAGCTGGAGGCCGTCGAGGTGAAGTGGAGCGTGCGAATGACCCT|GCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGGAGTCCCACC...TGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGC...ATGGATAtgTCgGAGACCCTGGtCGCCAtCgGGtAGGCAGCCTtgAGgGATGGAGCAAGGCGTGTCCGGGCAGCAGG PTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTl|qpgllttcsvlseaaagteaglhekldrawdrvpfpssghtvpvprrgvwrgvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11611 SPRTN::TSNAX-DISC1 ENSG00000010072.16::ENSG00000270106.6 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPRTN ENSG00000010072.16 protein_coding + + chr1:231337104-231355023:+ chr1:231338604:+ chr1:231472850-231490769:+ chr1:231474350:+ TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231693826:+ chr1:231664399-231954990:+ chr1:231829572:+ chr1:231339200,chr1:231339194 chr1:231649946,chr1:231649937 NA NA chr1:231474946,chr1:231474940 chr1:231785692,chr1:231785683 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none SprT-like_family(26%)| SprT-like(0%),Vps51(100%)| 3 2 2 99 30 ENST00000391858.8 ENST00000602956.5 downstream upstream duplicates(16),mismatches(1) GGAGAGGCCGAGAGAAATTTCGGTACTGCGCATGAACCGAGCGTGACGTTGAGGTTTGAAATAACCGGCAAAGAGTAAAGGCTGAAACTAGCTTCCTGAAA...CGCGTTTCCGCGAACTCTCGCGGGATTGACGGGCCGTCTCGAGAGCCGGCATCTCCTAGGAGCTAGTCCTGGTCCTCGGCTAGGCGGCTTGGGGTCGCGGC...ACCCCACACCGGACTTGCAGGCACTGTTTGTTCAGTTTAACGACCAATTCTTCTGGGGCCAGCTGGAGGCCGTCGAGGTGAAGTGGAGCGTGCGAATGACCCT|GCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGGAGTCCCACC...TGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGC...ATGGATAtgTCgGAGACCCTGGtCGCCAtCgGGtAGGCAGCCTtgAGgGATGGAGCAAGGCGTGTCCGGGCAGCAGG PTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTl|qpgllttcsvlseaaagteaglhekldrawdrvpfpssghtvpvprrgvwrgvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11612 EZH2::CUL1 ENSG00000106462.12::ENSG00000055130.18 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148811625:- chr7:148504349-148581413:- chr7:148508717:- CUL1 ENSG00000055130.18 protein_coding + - chr7:148697914-148801110:+ chr7:148755298:- chr7:148395006-148498202:+ chr7:148452390:- chr7:148810995,chr7:148810997 chr7:148771875,chr7:148771875 NA NA chr7:148508087,chr7:148508089 chr7:148468967,chr7:148468967 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none CXC_domain(100%),Polycomb_repressive_complex_2_tri-helical_domain(100%),SET_domain(21%),WD_repeat_binding_protein_EZH2(100%)| EZH2_WD-Binding(100%),PRC2_HTH_1(100%),SET(2%),preSET_CXC(100%)| 2 1 4 143 22 ENST00000320356.7 unknown upstream downstream duplicates(13),low_entropy(1) GCCCAGCACCCCCACCATTAATGTGCTGGAATCAAAGGATACAGACAGTGATAGGGAAGCAGGGACTGAAACGGGGGGAGAGAACAATGATAAAGAAGAAG...GCTCCTCTAACCATGTTTACAACTATCAACCCTGTGATCATCCACGGCAGCCTTGTGACAGTTCGTGCCCTTGTGTGATAGCACAAAATTTTTGTGAAAAG...GTGACCCTGACCTCTGTCTTACTTGTGGAGCCGCTGACCATTGGGACAGTAAAAATGTGTCCTGCAAGAACTGCAGTATTCAGCGGGGCTCCAAAAAG___CATCTATTGCTGGCACCATCTGACGTGGCAGGCTGGGGGATTTTTATCAAAGATCCTGTGCAGAAAAATGAATTCATCTCAGAATACTGTGGAGAG|TGTAGAACCAGATGAAGGACCCACTTGCTCATCTTGTGGCTAGATACAAGGAGTCACACTGCCTTTGCTACAAAGGATGAAGACCAAGGAAGAAAAGGCGGGAGATGAAGGGGAAAAGACTCCACCACACTGCCCAACCAAAGGCTTGGAGTGGGAGGGACCTACGC DPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGE|crtr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 11613 PLEKHA5::PLCZ1 ENSG00000052126.17::ENSG00000139151.16 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHA5 ENSG00000052126.17 protein_coding + + chr12:19129669-19376400:+ chr12:19184369:+ chr12:19282603-19529334:+ chr12:19337303:+ PLCZ1 ENSG00000139151.16 protein_coding - + chr12:18683169-18738100:- chr12:18715907:+ chr12:18836103-18891034:- chr12:18868841:+ chr12:19184548,chr12:19184549 chr12:18715779,chr12:18715777 NA NA chr12:19337482,chr12:19337483 chr12:18868713,chr12:18868711 NA NA sense antisense unknown intron intron duplication/5'-5' low none WW_domain(81%)| WW(42%)| 0 0 6 10 3 unknown unknown downstream upstream duplicates(12) CTTATTTATCAAGCCATAGTCTATTTGAATAGTAAACCCCCAAAAATCTGGTTTTATGGCTGACAGATCTTTAATAAAAATGAATCCCTCTGCCCCTTTCT...|...TGTCTTTGTATTGGAGAAATGGACCTAGAATATTCATAGAGAAATCTTGTCTGGCCCGTGGATACTCTCTGGGCAAATAAGGCAGAAGTTCTAAATTCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11645 HELLS::TBC1D12 ENSG00000119969.16::ENSG00000108239.9 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94562876:+ chr10:96305086-96373662:+ chr10:96322633:+ TBC1D12 ENSG00000108239.9 protein_coding + + chr10:94402541-94536332:+ chr10:94441896:+ chr10:96162298-96296089:+ chr10:96201653:+ chr10:94571009,chr10:94571008 chr10:94423604,chr10:94423600 NA NA chr10:96330766,chr10:96330765 chr10:96183361,chr10:96183357 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 0 1 1 180 95 ENST00000419900.6 ENST00000225235.5 downstream upstream duplicates(1) AGTTATGAGGAAAAAAAGAGGAAGAGAAGATGAATCATACAATATTTCAGAGGTCATGTCAAAAGAG|AAACCTTTTTCCAAAAAGGACAAAGGAACTCAAATCAGTTGTCCATAGTGCTCCTGGTTGGAAATTATTTGGTAAAGTCCCTCCTAGAGAGAATCTTCAGAAAACA VMRKKRGREDESYNISEVMSKE|kpfskkdkgtqiscp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96348147 FALSE 96281712 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11649 STAT5B::CAVIN1 ENSG00000173757.11::ENSG00000177469.13 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STAT5B ENSG00000173757.11 protein_coding - - chr17:42199176-42288633:- chr17:42276248:- chr17:40351194-40440651:- chr17:40428266:- CAVIN1 ENSG00000177469.13 protein_coding - - chr17:42402449-42423256:- chr17:42405388:- chr17:40554467-40575274:- chr17:40557406:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |PTRF/SDPR_family(59%) |PTRF_SDPR(2%) 0 2 0 197 447 ENST00000698810.1 ENST00000357037.6 upstream downstream duplicates(6) GGGCGGGCAAGCCAGACAGCTGGGCCGGAGCAGCCGCGGGCGCCCGAGGGGCCGAGCGAG|GATGAAGTGAAGCTGCCGGCCAAACTGAGCATCAGCAAATCGCT...GCTGCCAGAGAAGGAGGGCGAGGAGCTGGGCGAGGGCGAGCGGCCCGAGGAGGACGCAGCGGCGCTGGAGCTTTCGTCGGACGAGGCGGTGGAGGTTGAGG...ACTTCAAGAAGGCCTTCTCCAAGGAGAAGATGGAGAAGACCAAGGTGCGTACCCGCGAGAACCTGGAGAAGACGCGCCTCAAGACCAAGGAAAACCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 5B 1 Yes large granular lymphocytic leukaemia, skin basal cell, APL leukaemia_lymphoma, epithelial oncogene, TSG, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 11652 ATP2A2::IFT81 ENSG00000174437.18::ENSG00000122970.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1149 FALSE NA FALSE NA ATP2A2 ENSG00000174437.18 protein_coding + + chr12:110280756-110351093:+ chr12:110334143:+ chr12:110718561-110788898:+ chr12:110771948:+ IFT81 ENSG00000122970.16 protein_coding + + chr12:110124335-110218793:+ chr12:110218044:+ chr12:110562140-110656598:+ chr12:110655849:+ chr12:110338402,chr12:110338400 chr12:110217756,chr12:110217751 NA NA chr12:110776207,chr12:110776205 chr12:110655561,chr12:110655556 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cation_transport_ATPase_(P-type)(50%),Cation_transporter/ATPase__N-terminus(100%),E1-E2_ATPase(100%)| Cation_ATPase(14%),Cation_ATPase_N(100%),E1-E2_ATPase(100%),Hydrolase(43%)| 229 201 300 2623 643 ENST00000308664.10 ENST00000552912.5 downstream upstream duplicates(177),low_entropy(4),mismatches(17) CCCTTAATGAGTTTACCATAACTGGATCAACTTATGCACCTATTGGAGAAGT___GCATAAAGATGATAAACCAGTGAATTGTCACCAGTATGATGGTCTGGTAGAATTAGCAACAATTTGTGCTCTTTGTAATGACTCTGCTTTGGATTACAATGAG___GCAAAGGGTGTGTATGAAAAAGTTGGAGAAGCTACAGAGACTGCTCTCACTTGCCTAGTAGAGAAGATGAATGTATTTGATACCGAATTGAAGGGTCTTTCTAAAATAGAACGTGCAAATGCCTGCAACTCA|AAACTTCGGGAAAAACAAAAAGTTATACGAGAAAGTCATGGTCCAAATATGAAACAAGCAAAAATGTGGCGTGATTTGGAACAATTAATGGAATGTAAGAAACAGTGCTTTCTGAAACAACAAAGCCAAACTTCCATTGGTCAGGTAATTCAGGAGGGTGGGGAGGACCGGCTAATACTGTGAATTCTTGTGTCATCGTTTGGGGTTTTACTTGATACCACTAGCTATAAGCCTAATCTCATAATGTATTTCTTTTTTGAAACTGATTTGTATAGCATTTTGT LNEFTITGSTYAPIGEVHKDDKPVNCHQYDGLVELATICALCNDSALDYNEAKGVYEKVGEATETALTCLVEKMNVFDTELKGLSKIERANACNS|KLREKQKVIRESHGPNMKQAKMWRDLEQLMECKKQCFLKQQSQTSIGQVIQEGGEDRLIL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma LUNG,LUNG,UTERUS,LIVER no_match 110734542,110720600|110720600,110765822,110734542|110720600|110734542 FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 110600724,110628725|110630422,110600724,110584758|110618227|110600724 FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11653 SCARB1::DNAH10 ENSG00000073060.17::ENSG00000197653.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCARB1 ENSG00000073060.17 protein_coding - - chr12:124776856-124882668:- chr12:124795195:- chr12:125261402-125367214:- chr12:125279741:- DNAH10 ENSG00000197653.16 protein_coding + - chr12:123762188-123935720:+ chr12:123788597:- chr12:124246735-124420267:+ chr12:124273144:- chr12:124793470,chr12:124793480 chr12:123820040,chr12:123820047 NA NA chr12:125278016,chr12:125278026 chr12:124304587,chr12:124304594 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none CD36_family(84%)| CD36(84%)| 252 118 300 1351 1152 ENST00000339570.9 unknown upstream downstream duplicates(118),low_entropy(1),mismatches(25) AAGGCATCCCCACCTATCGCTTCGTGGCTCCCAAAACCCTGTTTGCCAACGGGTCCATCTACCCACCCAACGAAGGCTTCTGCCCGTGCCTGGAGTCTGGAATTCAGAACGTCAGCACCTGCAGGTTCA___GTGCCCCCTTGTTTCTCTCCCATCCTCACTTCCTCAACGCcGACCCGGTTCTGGCAGAAGCGGTGACTGGCCTGCACCCTAACCAGGAGGCACACTCCTTGTTCCTGGACATCCACCCG___GTCACGGGAATCCCCATGAACTGCTCTGTGAAACTGCAGCTGAGCCTCTACATGAAATCTGTCGCAGGCATTGG|GGCATCACCTCCCTCTCGGGCTGGGCACTGCCACACCGCAGCCGGACCTGCTTTGTACTCACTATGGTTCCTCTAGCATTAAGACATCTGAGTACCCGGCACACg___AGATGGAATATCTCTCTGTCACCCAGGCTGTAGTGCAGTGGCATGACCACCATACTCTGCAACCTTCCCGTCTAGAATGCAAAATA GIPTYRFVAPKTLFANGSIYPPNEGFCPCLESGIQNVSTCRFSAPLFLSHPHFLNADPVLAEAVTGLHPNQEAHSLFLDIHPVTGIPMNCSVKLQLSLYMKSVAGIg|asppsraghchtaagpalyslwfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11654 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1150 TRUE 2041 TRUE 788 GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69849742:+ chr2:70056792-70108516:+ chr2:70076874:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69804533:+ chr2:69871557-70054244:+ chr2:70031665:+ chr2:69852271,chr2:69852269 chr2:69796862,chr2:69796860 NA NA chr2:70079403,chr2:70079401 chr2:70023994,chr2:70023992 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BTB/POZ_domain(100%),BTB_And_C-terminal_Kelch(100%)|Annexin(95%) BACK(100%),BTB(100%)|Annexin(39%) 22 19 47 298 6386 ENST00000282570.4 ENST00000394295.6 downstream upstream duplicates(19),mismatches(7) CTATGGATTAGATTCTGTAAAGAAAAA___GTGCCTTGAATGGCTTCTAAACAATTTGATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAG___TATAAATGTCATGAAACAGCTCATTGGTTCATCTAACTTATTTGTGATGCAAGTGGAGATGGATATATACACTGCTCTAAAAAAG___TGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTTTTGACAGAAACAGATGTCTGGTTTTCTAAACAGAGGAAAG|GCACCGATGAAGACGCCATTATTAGCGTCCTTGCCTACCGCAACACCGCCCAGCGCCAGGAGATCAGGACAGCCTACAAGAGCACCATCGGCAGG___GACTTGATAGACGACCTGAAGTCAGAACTGAGTGGCAACTTCGAGCAGGTGATTGTGGGGATGATGACGCCCACGGTGCTGTATGACGTGCAAGAGCTGCGAAGGGCCATGAAG___GGAGCCGGCACTGATGAGGGCTGCCTAATTGAGATCCTGGCCTCCCGGACCCCTGAGGAGATCCG YGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRK|gTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSGNFEQVIVGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRTPEEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 FALSE|FALSE,FALSE|FALSE 70008652|70031665,70008652|70031665 FALSE|TRUE,FALSE|TRUE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11655 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2041 TRUE 788 GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69849742:+ chr2:70056792-70108516:+ chr2:70076874:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69803393:+ chr2:69871557-70054244:+ chr2:70030525:+ chr2:69852271,chr2:69852269 chr2:69796862,chr2:69796860 NA NA chr2:70079403,chr2:70079401 chr2:70023994,chr2:70023992 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none BTB/POZ_domain(100%),BTB_And_C-terminal_Kelch(100%)|Annexin(95%) BACK(100%),BTB(100%)|Annexin(43%) 1 0 47 298 36 ENST00000282570.4 ENST00000460942.5 downstream upstream duplicates(9),mismatches(6) TCATGAAACAGCTCATTGGTTCATCTAACTTATTTGTGATGCAAGTGGAGATGGATATATACACTGCTCTAAAAAAG___TGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTTTTGACAGAAACAGATGTCTGGTTTTCTAAACAGAGGAAAG|CACAAACAACGAGGAAACAGAAGATTCAC MKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRK|aqttrkqki NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 FALSE|FALSE,FALSE|FALSE 70008652|70031665,70008652|70031665 FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11656 TRAPPC3::NPHP4 ENSG00000054116.12::ENSG00000131697.18 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRAPPC3 ENSG00000054116.12 protein_coding - - chr1:36136570-36156053:- chr1:36149092:- chr1:36602171-36621654:- chr1:36614693:- NPHP4 ENSG00000131697.18 protein_coding - + chr1:5862811-5992473:- chr1:5896672:+ chr1:5922871-6052533:- chr1:5956732:+ chr1:36143595,chr1:36143601 chr1:5896346,chr1:5896340 NA NA chr1:36609196,chr1:36609202 chr1:5956406,chr1:5956400 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 3 1 62 111 20 ENST00000373162.5 unknown upstream upstream duplicates(14),mismatches(17) GCGAACCGTGGCACCGAGAGCAAGAAAATGGTAACTTGGAGCGCGTGACCTCGGCGGGCGGGGCGAAATTGAGGCGTACAGGGAAGGGGCCCGGCGCCGAGCGCGAGGTGCGTTTGGAAAAGGGCCTTCCTGTGAGCTCTGGCAAGGGGAAGCCTCTTGCTGGGTCACTCCGGGGGCGTTCCAGGCAGGTGAGGGGACCGTCGGAGAAGTTCCCCGGAGGAGACCCCGCCCCCAAGGCCTGAGTGCAGCTCTGTcCTAAaCCAACAACAACGACG|CTCTTCCTGGTGAAAGGTTTTGAAGCAAGAAGACCCAGAATCAAAGCACCCCATATCCTGATCTCTGAAATGTCATCCCCATTCAGGCAGACCAGGCTCCTCAGAGAAACGGGCCCTGGCTGGCGGCAGGGAGAGCACAAGATGAGCCTGGAACCGGCACTGCTCCAGAAAGCAGGACGCGCTCAAAGTCCAATCAGAGCCGGTGAAAGGCCGGAAGGGCTCCCGGAATAATAATGAGTGCAACCCCATGCATCGATGAAGATGCAGGAGACCGCAGCCACGCTCCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11659 ECPAS::SUSD1 ENSG00000136813.15::ENSG00000106868.17 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1152 FALSE NA FALSE NA ECPAS ENSG00000136813.15 protein_coding - - chr9:111360685-111484745:- chr9:111408571:- chr9:114122965-114247025:- chr9:114170851:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112041960:- chr9:114803063-114937577:- chr9:114804240:- chr9:111402258,chr9:111402265 chr9:112045115,chr9:112045117 NA NA chr9:114164538,chr9:114164545 chr9:114807395,chr9:114807397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Proteasome_stabiliser(100%)|TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(17%) Ecm29(100%)| 18 9 20 423 245 ENST00000259335.8 ENST00000374263.7 upstream downstream duplicates(9),mismatches(1) CTGACACCCTCCCTGATCAAGAGGAACTCATTCAGAGTGCTACAGAAACAATAG___GCTCATTTTTGGACAGTACATCACCCCTCCTGGCAATTGCTGCCTGCACAGCCCTGGGTGAAATTGGCAGAAATGGTCCACTTCCAATCCCCAGTGAGGGATCTGGCTTTACCAAATTGCATCTTGTAGAAAGCTTACTAAGTAGAATACCTTCCAGTAAAGAAACAAATAAG___ATGAAAGAACGAGCAATCCAAACACTGGGATATTTTCCAGTTGGGGATGGAGATTTTCCTCACCAGAAACTCCTCTTGCAAGGTCTGATGGATTCTGTGGAG|ATTCGTCACTCATGCTGCTGCAGATGGCGGGTGTTGGACTGGGTTCCCTGGCTGTTGTGATCATTCTCACATTCCTCTCCTTCTCAGCGGTGTG___ATGGCAGATGGACACTGAGTGGGGAGGATGCACTGCTGCTGGGCAGGTGTTCTGGCAGCTTCTCAGGTGCCCGCACAGAGGCTCCGTGTGACTTCCGTCCAGGGAGCATGTGGGCCTGCAACTTTCTCCATTCCCAGCTGGGCCCCATTCCTGGAT DTLPDQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLSRIPSSKETNKMKERAIQTLGYFPVGDGDFPHQKLLLQGLMDSVE|IRHSCCCRWRVLDWVPWLL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11660 BANP::CA5A ENSG00000172530.22::ENSG00000174990.8 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1153 TRUE 2043 TRUE 789 BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:87951515:+ chr16:87982850-88110924:+ chr16:87985121:+ CA5A ENSG00000174990.8 protein_coding - - chr16:87881546-87936580:- chr16:87902520:- chr16:87915152-87970186:- chr16:87936126:- chr16:87952310,chr16:87952309 chr16:87904244,chr16:87904245 NA NA chr16:87985916,chr16:87985915 chr16:87937850,chr16:87937851 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Eukaryotic-type_carbonic_anhydrase(57%) |Carb_anhydrase(37%) 0 37 1 150 190 ENST00000286122.11 ENST00000648022.1 downstream downstream duplicates(9),mismatches(4) GGACGGACGCCATTATCGCATCTCCCCGACAAACACCACGAGAATTCCGCAGCCCACACG|CTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATAGGCGTGTTTTTAAAG___CTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAG___...CAAATCTGCCTTTAAACTGGAATTCGGTTGCTGACCCAGCCCGAGCCTCGGCTATCTTGTCGGCACCAGGGGCACAGCACTCCGTCTGTAG___GACGCGCGGGCGGCCATGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACCGAGTCGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAG___CTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTTGGTGAAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAATGAGGGCACAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11661 BANP::CA5A ENSG00000172530.22::ENSG00000174990.8 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2043 TRUE 789 BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:87952273:+ chr16:87982850-88110924:+ chr16:87985879:+ CA5A ENSG00000174990.8 protein_coding - - chr16:87881546-87936580:- chr16:87902520:- chr16:87915152-87970186:- chr16:87936126:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Eukaryotic-type_carbonic_anhydrase(57%) |Carb_anhydrase(37%) 2 0 12 104 190 ENST00000412691.5 ENST00000648022.1 downstream downstream duplicates(7),low_entropy(1),mismatches(1) ACGCCATTATCGCATCTCCCCGACAAACACCACGAGAATTCCGCAGCCCACACG___GATGCAGAAAGTAGATGACATTCCATCCACACTGTGTGAGCAAATTGGAGAGATTGCCTTGATAGAGGACTGATGTTTTTCACTGATGAGATG|CTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATAGGCGTGTTTTTAAAG___CTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAG___CTGGCCATGTCCACGACCAAATCTGCCTTTAAACTGGAATTCGGTTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11662 CA5A::BANP ENSG00000174990.8::ENSG00000172530.22 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CA5A ENSG00000174990.8 protein_coding - - chr16:87881546-87936580:- chr16:87936309:- chr16:87915152-87970186:- chr16:87969915:- BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:87975048:+ chr16:87982850-88110924:+ chr16:88008654:+ chr16:87929914 chr16:87953359 NA NA chr16:87963520 chr16:87986965 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |BEN_domain(100%) |BEN(100%) 1 3 4 76 163 ENST00000649158.1 ENST00000393208.6 upstream upstream duplicates(2) TACAAAAAGAGGTGGGTACACGCCAGTCCACAGTGGTCCTGATCAAAGTGAGAACAGACAGCAGGGAACATCACCCTCTTCAGACTGGAGTCAGTGGGAACAGACCCAAGATGTTGGGGAGGAACACTTGGAAGACCTCAGCTTTCTCCTTCTTGGTTGAGCAGATGTGGGCCCCTCTCTGGAGTCGTTCGATGAGGCCAGGGCGATGGTGTTCTCAGCGTTCCTGTGCATGGCAAACCAGCAATAACACTT|GTGACCAAAAGCCAGCCCCACTGTGAGTTGAACTCTTTCGTGTTGACCGGCCACTCTCC[t]GTGCTCTGGATGATGTCGGAACACGACCTGGCCGATGTGGTTCAGATTGCAGTGGAAGACCTGAGCCCTGACCACCCAG___TTGTTTTGGAGAATCATGTAGTGACAGATGAAGACGAACCTGCTTTGAAACGCCAGCGACTAGAAATCAATTGCCAG...CCTGTATTCCATCAACCAGACAATCTGCTTGCGGTTGGATAGCATTGAAGCCAAATTGCAAGCCCTGGAGGCTACTTGTAAATCCTTAGAAGAAAAGCTGG MLGRNTWKTSAFSFLVEQMWAPLWSRSMRPGRWCSQRSCAWQTSNNT|cdqkpapl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11663 TMEM94::ARMC7 ENSG00000177728.17::ENSG00000125449.7 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1154 TRUE 2044 TRUE 790 TMEM94 ENSG00000177728.17 protein_coding + + chr17:75441159-75500452:+ chr17:75496471:+ chr17:73437240-73496533:+ chr17:73492552:+ ARMC7 ENSG00000125449.7 protein_coding + + chr17:75109952-75130272:+ chr17:75114169:+ chr17:73106047-73126367:+ chr17:73110264:+ chr17:75496613,chr17:75496614,chr17:75496613 chr17:75111463,chr17:75111156,chr17:75111460 NA NA chr17:73492694,chr17:73492695,chr17:73492694 chr17:73107558,chr17:73107251,chr17:73107555 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Armadillo/beta-catenin-like_repeat(100%) |Arm(100%) 5 3 29 213 64 ENST00000314256.12 ENST00000582136.5 downstream upstream duplicates(6),mismatches(5) AGTACGGGGAGGTGACCTGCTGCCTGGGCAGCTCTGCCAACCTGCGGAACAGCTGCCTCTTCCTCCAGAGCGACATCAG___CATTGCCCTGGATCCCCTGTACCCATCCCGTTGCTCCTGGGAGACCTTTGGCTACGCCACCAGCATCAGCATGGCCCAGGCCTCGGATGGCCTTTCTCCCCTGCAGCTGTCAGGGCAGCTCAACAGCCTGCCCTGTTCCCTGACCTTTCGCCAGGAGGAGACCATCAGCATCATCCGGCTTATCGAACAG|CTGCTGCAGTCTGAACGGTGACGGTGGCCCCTGCAGAAGCATGTGGCTAAATCTCCACCAGGGGGCGATAGAGCTCCTCCAAATCAAGCTGCTGCCCCTGGAGAAAAATTGGCGGAAGTCACAGAGCAGTCCCCACCAAAAGTGTTTACCAAGTGGAGTCTTTCCTGCTGGCGTTTCCTCAGGGTCAGGAAGCAACTTTCCCAGGACAGGGGCACCCTGAGGTCCGGGTCCACTGAGCTATGGGGG...___CTGATTCCTAGAAGCTGAGTCCCG YGEVTCCLGSSANLRNSCLFLQSDISIALDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQ|llqser* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11664 TMEM94::ARMC7 ENSG00000177728.17::ENSG00000125449.7 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2044 TRUE 790 TMEM94 ENSG00000177728.17 protein_coding + + chr17:75441159-75500452:+ chr17:75496471:+ chr17:73437240-73496533:+ chr17:73492552:+ ARMC7 ENSG00000125449.7 protein_coding + + chr17:75109952-75130272:+ chr17:75128677:+ chr17:73106047-73126367:+ chr17:73124772:+ chr17:75496613,chr17:75496614,chr17:75496613 chr17:75111463,chr17:75111156,chr17:75111460 NA NA chr17:73492694,chr17:73492695,chr17:73492694 chr17:73107558,chr17:73107251,chr17:73107555 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Armadillo/beta-catenin-like_repeat(100%) |Arm(100%) 2 1 7 213 74 ENST00000314256.12 ENST00000581078.1 downstream upstream mismatches(2) GTACGGGGAGGTGACCTGCTGCCTGGGCAGCTCTGCCAACCTGCGGAACAGCTGCCTCTTCCTCCAGAGCGACATCAG___CATTGCCCTGGATCCCCTGTACCCATCCCGTTGCTCCTGGGAGACCTTTGGCTACGCCACCAGCATCAGCATGGCCCAGGCCTCGGATGGCCTTTCTCCCCTGCAGCTGTCAGGGCAGCTCAACAGCCTGCCCTGTTCCCTGACCTTTCGCCAGGAGGAGACCATCAGCATCATCCGGCTTATCGAACAG|GAGGCCTGTGCAACCTGTGCCCAGACAGGGCCAACAAGGAGCACATCCTGCACGCAGGAGGTGTCCCACTCATCATCAACTGCCTATCCAGCCCCAATGAGGAGACGGTGCTGTCTGCCATCACCACGCTCATGCACCTGAGCCCGCCGGGCCGCAGCTTTCTCCCAGAGCTGACCGCCACGCCCGTGGTGCAGTGCATGCTTCGCT...TCCGGAcCCTGGCACAGATCTTCCTGGAGGACTTCTGCTCCCCCCGCCAGGTGGCCGAGGCCCGCAGCCGGCAGGCGCACTCTGCCCTGGGTATCCCACTG YGEVTCCLGSSANLRNSCLFLQSDISIALDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQ|EACATCAQTGPTRSTSCTQEVSHSSSTAYPAPMRRRCCLPSPRSCT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11671 HSPG2::WNT4 ENSG00000142798.20::ENSG00000162552.15 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1156 TRUE 2046 TRUE 791 HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21829993:- chr1:22148737-22263803:- chr1:22156486:- WNT4 ENSG00000162552.15 protein_coding - - chr1:22117313-22143969:- chr1:22129851:- chr1:22443806-22470462:- chr1:22456344:- chr1:21829908,chr1:21829914 chr1:22133696,chr1:22133699 NA NA chr1:22156401,chr1:22156407 chr1:22460189,chr1:22460192 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EGF-like_domain(50%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%),Laminin_G_domain(34%),Low-density_lipoprotein_receptor_domain_class_A(100%)|wnt_family(100%) EGF(78%),I-set(100%),Ig_2(100%),Ig_3(100%),Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(51%),Laminin_G_2(43%),Ldl_recept_a(100%),hEGF(79%),ig(100%)|wnt(100%) 3 8 15 298 20 ENST00000374695.8 ENST00000415567.1 upstream downstream duplicates(4),mismatches(3) GAGATCGTCTTCCATGACCTCAACCTCACGGCGCACGGCATCTCCCACTGCCCCACCTGTCGGGACCGGCCCTGCCAG___AATGGCGGTCAGTGCCATGACTCTGAGAGCAGCAGCTACGT...CAGCTGGCTTCACCGGGAGCCGCTGTGAGCACTCGCAGGCCCTGCACTGCCATCCAG___AGGCCTGTGGGCCCGACGCCACCTGTGTGAACCGGCCTGACGGTCGAGGCTACACCTGCCGCTGCCACCTGGGCCGCTCGGGGTTGCGGTGTGAGGAAG|GTACCTGGCCAAGCTGTCGTCGGTGGGGAGCATCTCAGAGGAGGAGACGTGCGAGAAACTCAAGGGCCTGATCCAGAGGCAGGTGCAGATGTGCAAGCGGAACCTGGAAGTCATGGACTCGGTGCGCCGCGGTGCCCAGCTGGCCATTGAGGAGTGCCAGTACCAGTTCCGGAACCGGCGCTGGAACTGCTCCACACTCGACTCCTTGCCCGTCTTCGGCAAGGTGGTGACGCAAG___GTGGCAAAGCCTGGCATGGAGGAG AGFTGSRCEHSQALHCHPEACGPDATCVNRPDGRGYTCRCHLGRSGLRCEE|gtwpscrrwgasqrrrrarnsra* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11672 HSPG2::WNT4 ENSG00000142798.20::ENSG00000162552.15 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2046 TRUE 791 HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21830982:- chr1:22148737-22263803:- chr1:22157475:- WNT4 ENSG00000162552.15 protein_coding - - chr1:22117313-22143969:- chr1:22129851:- chr1:22443806-22470462:- chr1:22456344:- chr1:21829908,chr1:21829914 chr1:22133696,chr1:22133699 NA NA chr1:22156401,chr1:22156407 chr1:22460189,chr1:22460192 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EGF-like_domain(50%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%),Laminin_G_domain(34%),Low-density_lipoprotein_receptor_domain_class_A(100%)|wnt_family(100%) EGF(78%),I-set(100%),Ig_2(100%),Ig_3(100%),Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(51%),Laminin_G_2(43%),Ldl_recept_a(100%),hEGF(79%),ig(100%)|wnt(100%) 1 0 8 250 20 ENST00000374695.8 ENST00000415567.1 upstream downstream duplicates(1) ATCGTCTTCCATGACCTCAACCTCACGGCGCACGGCATCTCCCACTGCCCCACCTGTCGGGACCGGCCCTGCCAG___AATGGCGGTCAGTGCCATGACTCTGAGAGCAGCAGCTACGTGTGCGTCTGCCCAGCTGGCTTCACCGGGAGCCGCTGTGAGCACTCGCAGGCCCTGCACTGCCATCCAG|GTACCTGGCCAAGCTGTCGTCGGTGGGGAGCATCTCAGAGGAGGAGACGTGCGAGAAACTCAAGGGCCTGATCCAGAGGCAGGTGCAGATGTGCAAGCGGAACCTGGAAGTCATGGACTCGGTGCGCCGCGGTGCCCAGCTGGCCATTGAGGAGTGCCAGTACCAGTTCCGGAACCGGCGCTGGAACTGCTCCACACTCGACTCCTTGCCCGTCTTCGGCAAGGTGGTGACGCAAG___GTGGCAAAGCCTGGCATGGAGGAG IVFHDLNLTAHGISHCPTCRDRPCQNGGQCHDSESSSYVCVCPAGFTGSRCEHSQALHCHP|gtwpscrrwgasqrrrrarnsra* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11673 HSPG2::WNT4 ENSG00000142798.20::ENSG00000162552.15 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2046 TRUE 791 HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21831215:- chr1:22148737-22263803:- chr1:22157708:- WNT4 ENSG00000162552.15 protein_coding - - chr1:22117313-22143969:- chr1:22129851:- chr1:22443806-22470462:- chr1:22456344:- chr1:21829908,chr1:21829914 chr1:22133696,chr1:22133699 NA NA chr1:22156401,chr1:22156407 chr1:22460189,chr1:22460192 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EGF-like_domain(11%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%),Laminin_G_domain(34%),Low-density_lipoprotein_receptor_domain_class_A(100%)|wnt_family(100%) EGF(11%),I-set(100%),Ig_2(100%),Ig_3(100%),Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(51%),Laminin_G_2(43%),Ldl_recept_a(100%),hEGF(7%),ig(100%)|wnt(100%) 1 0 2 381 20 ENST00000374695.8 ENST00000290167.11 upstream downstream mismatches(1) TTCCACACCGTGACCCTGCTGCGCAGCCTCACCCAGGGCTCCCTGATTGTGGGTGACCTGGCCCCGGTCAATGGGACCTCCCAG___GGCAAGTTCCAGGGCCT...CCGGGAGCTGCGCATCCAGGGCGAGGAGATCGTCTTCCATGACCTCAACCTCACGGCGCACGGCATCTCCCACTGCCCCACCTGTCGGGACCGGCCCTGCCAG|GTACCTGGCCAAGCTGTCGTCGGTGGGGAGCATCTCAGAGGAGGAGACGTGCGAGAAACTCAAGGGCCTGATCCAGAGGCAGGTGCAGATGTGCAAGCGGAACCTGGAAGTCATGGACTCGGTGCGCCGCGGTGCCCAGCTGGCCATTGAGGAGTGCCAGTACCAGTTCCGGA?CCGGCGCTGGAACTGCTCCACACTCGACTCCTTGCCCGTCTTCGGCAAGGTGGTGACGCAAGGTGAGG RELRIQGEEIVFHDLNLTAHGISHCPTCRDRPCQ|vpgqavvggehlrggdvretqgpdpeagadvqaepgshglgaprcpagh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11674 HSPG2::WNT4 ENSG00000142798.20::ENSG00000162552.15 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2046 TRUE 791 HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21831463:- chr1:22148737-22263803:- chr1:22157956:- WNT4 ENSG00000162552.15 protein_coding - - chr1:22117313-22143969:- chr1:22129851:- chr1:22443806-22470462:- chr1:22456344:- chr1:21829908,chr1:21829914 chr1:22133696,chr1:22133699 NA NA chr1:22156401,chr1:22156407 chr1:22460189,chr1:22460192 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(100%),Laminin_G_domain(31%),Low-density_lipoprotein_receptor_domain_class_A(100%)|wnt_family(100%) I-set(100%),Ig_2(100%),Ig_3(100%),Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(46%),Laminin_G_2(39%),Ldl_recept_a(100%),ig(100%)|wnt(100%) 1 0 0 406 20 ENST00000374695.8 ENST00000290167.11 upstream downstream none ATCTGAACGAGGAACTCTACCTGGGTGGCTATCCTGACTATGGTGCCATCCCCAAGGCGGGGCTGAGCAGCGGCTTCATAG|GTACCTGGCCAAGCTGTCGTCGGTGGGGAGCATCTCAGAGGAGGAG LNEELYLGGYPDYGAIPKAGLSSGFI|gtwpscrrwgasqrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11675 HEXD::OGFOD3 ENSG00000169660.17::ENSG00000181396.13 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE TRUE 1157 TRUE 2047 TRUE 792 HEXD ENSG00000169660.17 protein_coding + + chr17:82418318-82442645:+ chr17:82419883:+ chr17:80376194-80400521:+ chr17:80377759:+ OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82409410:- chr17:80347086-80376513:- chr17:80367286:- chr17:82423568,chr17:82423831,chr17:82423566 chr17:82411210,chr17:82411049,chr17:82411212 NA NA chr17:80381444,chr17:80381707,chr17:80381442 chr17:80369086,chr17:80368925,chr17:80369088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |2OG-Fe(II)_oxygenase_superfamily(100%) |2OG-FeII_Oxy_3(100%) 2 8 8 63 281 ENST00000337014.10 ENST00000580445.5 downstream downstream duplicates(2) GGCCGGGCCTGGCTGCGCCCCCGGACCTCGCGGGACCGCGGCGGCGCAG___GAAGAAGTCCCCAAGGAGACTTCGCCATAGGAGTTCACAGGAAATATTGAAATGTCAGGTTCCACgCCATTTCAGATGAGATTAGTTCATTTAGACCTTAAAGGAGCTCCACCAAAGGTCTCGTACCTCTCAGAG|CGTAGCTGAAAAGGGGCTCTCCCTGGGAGGATCTGACGGAGGG___GCATCCATTCTGGACTTGCACTCAGGGGCCCTGTCTGTCGGGAAGCACTTTGTGAACCTGTACAG___ATACTTCGGGGATAAAATACAGAACATCTTCTCAGAGGAGGACTTCCGGTTATACCG___GGAGGTGCGGCAGAAGGTCCAGCTCACCATTGCTGAGGCTTTTGGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCACGGAAGCGCGGACGGCGCACGACGAGTACTGGCATGCGCACGTGGACA MSGSTPFQMRLVHLDLKGAPPKVSYLSE|RS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11676 HEXD::OGFOD3 ENSG00000169660.17::ENSG00000181396.13 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2047 TRUE 792 HEXD ENSG00000169660.17 protein_coding + + chr17:82418318-82442645:+ chr17:82419883:+ chr17:80376194-80400521:+ chr17:80377759:+ OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82406482:- chr17:80347086-80376513:- chr17:80364358:- chr17:82423568,chr17:82423831,chr17:82423566 chr17:82411210,chr17:82411049,chr17:82411212 NA NA chr17:80381444,chr17:80381707,chr17:80381442 chr17:80369086,chr17:80368925,chr17:80369088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |2OG-Fe(II)_oxygenase_superfamily(100%) |2OG-FeII_Oxy_3(100%) 0 4 13 63 343 ENST00000337014.10 ENST00000329197.9 downstream downstream duplicates(2),mismatches(2) GCGGGACCGCGGCGGCGCAG___GAAGAAGTCCCCAAGGAGACTTCGCCATAGGAGTTCACAGGAAATATTGAAATGTCAGGTTCCACgCCATTTCAGATGAGATTAGTTCATTTAGACCTTAAAGGAGCTCCACCAAAGGTCTCGTACCTCTCAGAG|GCATCCATTCTGGACTTGCACTCAGGGGCCCTGTCTGTCGGGAAGCACTTTGTGAACCTGTACAG___ATACTTCGGGGATAAAATACAGAACATCTTCTCAGAGGAGGACTTCCGGTTATACCG___GGAGGTGCGGCAGAAGGTCCAGCTCACCATTGCTGAGGCTTTTGGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCAtGGAAGCGCGGACGGCGCACGACGAGTACTGGCATGCGCACGTaGACAAGGTGA...CCTCTCCAACTACCTGGAGGACTTCGGCGGAGGGCGGTTCATGTTCATGGAGGAGGGTGCCAACAAGACGGTGGAGCCGAGAGCTG___GATGTTTTTGTTTCC MSGSTPFQMRLVHLDLKGAPPKVSYLSE|ASILDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFRLYREVRQKVQLTIAEAFGISASSLHLTKPTFFSRINSmEARTAHDEYWHAHVDKv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11678 AP1G1::IST1 ENSG00000166747.13::ENSG00000182149.21 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2048 TRUE 793 AP1G1 ENSG00000166747.13 protein_coding - - chr16:71729000-71809201:- chr16:71808763:- chr16:71762903-71843104:- chr16:71842666:- IST1 ENSG00000182149.21 protein_coding + - chr16:71845996-71931199:+ chr16:71896961:- chr16:71879899-71965102:+ chr16:71930864:- chr16:71794686,chr16:71794701 chr16:71900168,chr16:71900180 NA NA chr16:71828589,chr16:71828604 chr16:71934071,chr16:71934083 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 3 9 5 700 27 ENST00000569748.5 unknown upstream downstream duplicates(3),mismatches(2) AAATAGTCCTCGGCAGGGTCCGAGTTCTTGGATAATTCGAGAGAAAAGGCACGATAAGTTGCAGTACGAGGACACGGAAACGACCAGGAGAGGAGGACAGGGAGCGAAGTTTCCTCAATAGTGTGTGAAGTTAGTTAAAAACTCCCTCCTTCCTCAGGATCCCTCCGCCTGCGGTAGCGGTGGTGAGGCCGAGGGAGCCGCCATTTTGGATGTTCGGTTCCTGCTGCCACTGCTGCCGCCGCCCCCGGAGCTGCTGGTTTCATTCGAGGTTTCGGGCCG|GGTCTCACTCTGTCCTCCAGACTGAAATGCAGTGGCACGATTACCGACTCACTATAAcCTCCACCTCCCAGGCTCAAGCAATCCTCCTACCTCAGCCTCCTGGACTATAGATGCGGGCCTCCACGCCTGGCTGTTTTTATTTTTGTAGAGAACGGGATTTTGCTATGTTGCCCACGCTGTTCTCCAACTCCCAAGCTCAAGTGATCATCCCACCTAGCCCTCCCCAAGTACTGGGATTACAGGGGTGAGCCACCACATCTGGCCAGTTTTATCTTCTAATGACTATTACCAAGTCCCCCTATCCCAGAAGTTCTGAGGAAGCAAATTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11679 AP1G1::IST1 ENSG00000166747.13::ENSG00000182149.21 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2048 TRUE 793 AP1G1 ENSG00000166747.13 protein_coding - - chr16:71729000-71809201:- chr16:71808763:- chr16:71762903-71843104:- chr16:71842666:- IST1 ENSG00000182149.21 protein_coding + + chr16:71845996-71931199:+ chr16:71915626:+ chr16:71879899-71965102:+ chr16:71949529:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Regulator_of_Vps4_activity_in_the_MVB_pathway(100%) |Ion_trans(100%),Ist1(100%) 0 1 1 700 1972 ENST00000569748.5 ENST00000535424.5 upstream upstream none AGTTCTTGGATAATTCGAGAGAAAAGGCACGATAAGTTGCAGTACGAGGACACGGAAACGACCAGGAGAGGAGGACAGGGA?CGAAGTTTCCTCAATAGTG...GCTGGTTTCATTCGAGGTTTCGGGCCG|GAGGAACAGCACAGCATGCTGGGCTCTGGATTTAAAGCTGAGCGCTTAAGAGTGAATTTGAGATTAGTCATAAATCGCCTTAAACTATTGGAGAAAAAGAAAA___CGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11680 IST1::AP1G1 ENSG00000182149.21::ENSG00000166747.13 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IST1 ENSG00000182149.21 protein_coding + + chr16:71845996-71931199:+ chr16:71895589:+ chr16:71879899-71965102:+ chr16:71929492:+ AP1G1 ENSG00000166747.13 protein_coding - - chr16:71729000-71809201:- chr16:71764726:- chr16:71762903-71843104:- chr16:71798629:- chr16:71900180 chr16:71794769 NA NA chr16:71934083 chr16:71828672 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Adaptin_C-terminal_domain(100%),Adaptin_N_terminal_region(59%) ATXN-1_C(100%),AXH(100%),zf-C2H2(100%),zf-C2H2_4(100%)|Adaptin_N(42%),Alpha_adaptinC2(100%),Cnd1(0%) 0 1 0 1557 872 ENST00000378799.11 ENST00000299980.9 downstream downstream none CCCTGAAGTCGGTGTCTGCTGCGTTCACGGCAGGATTCGGTTAG|GTACGAATTTTGCGGTTATTAAGAATTTTAGGACGAAATGATGATGATTCAAGTGAA...ATCCTGGGTCGTTTCTTATTGAACAATGACAAGAATATTAG___ATATGTGGCTCTGACATCTTTGTTGAAGACTGTACAGACAGATCATAATGCAGTACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11682 AAMDC::ABCB10 ENSG00000087884.16::ENSG00000135776.5 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2049 TRUE 794 AAMDC ENSG00000087884.16 protein_coding + + chr11:77821109-77918432:+ chr11:77842628:+ chr11:77532155-77629478:+ chr11:77553674:+ ABCB10 ENSG00000135776.5 protein_coding - - chr1:229516582-229558707:- chr1:229531731:- chr1:229652329-229694454:- chr1:229667478:- chr11:77868887,chr11:77868882 chr1:229533217,chr1:229533222 NA NA chr11:77579933,chr11:77579928 chr1:229668964,chr1:229668969 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_of_unknown_function_(DUF498/DUF598)(24%)|ABC_transporter(100%) DUF498(0%)|ABC_tran(100%) 2 2 3 505 359 ENST00000526164.5 ENST00000344517.5 downstream downstream duplicates(1),mismatches(1) GCGCAGATCCCGAAGCAGCGCTGGGAGCGTAAGTGCGGGCAGAGCACTGCGCCGTTTGGGAACGCAACTTTGAGGAGACAGTGCGGTGG___ACTTCAGTGAAGTTCCTTATGACTTCCCCTGAAATTGCTTCCTTATCATGGGGGCAAATG...CTAATACAACCTATAAGGACTGCAAAGTATGGCCAGGGGGcAGTCGGACTTGGGATTGGAGAGAAACAGGAACTGAG|GTCTGAGCTCTTTCTACTCGGAGCTGATGAAAGGACTGGGTGCAGGGGGGCGCCTCTGGGAGCTCCTGGAGAGAGAGCCCAAGCTGCCTTTTAACG___AGGGGGTCATCTTAAATGAGAAAAGCTTCCAG...CACTCCTGCTGAGGTTGTACGACCCTGCTTCTG___GAACTATTAGTCTTGATGGCCATGACATCCGTCAGCTAAACCCAGTGTGGCTGAGATCCAAAATTGGG NTTYKDCKVWPGGSRTWDWRETGTE|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11683 AAMDC::ABCB10 ENSG00000087884.16::ENSG00000135776.5 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2049 TRUE 794 AAMDC ENSG00000087884.16 protein_coding + + chr11:77821109-77918432:+ chr11:77842628:+ chr11:77532155-77629478:+ chr11:77553674:+ ABCB10 ENSG00000135776.5 protein_coding - - chr1:229516582-229558707:- chr1:229530408:- chr1:229652329-229694454:- chr1:229666155:- chr11:77868887,chr11:77868882 chr1:229533217,chr1:229533222 NA NA chr11:77579933,chr11:77579928 chr1:229668964,chr1:229668969 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Protein_of_unknown_function_(DUF498/DUF598)(24%)|ABC_transporter(100%) DUF498(0%)|ABC_tran(100%) 1 2 2 505 361 ENST00000526164.5 ENST00000344517.5 downstream downstream none AGATCCCGAAGCAGCGCTGGGAGCGTAAGTGCGGGCAGAGCACTGCGCCGTTTGGGAACGCAACTTTGAGGAGACAGTGCGGTGG___ACTTCAGTGAAGTTCCTTATGACTTCCCCTGAAATTGCTTCCTTATCATGGGGGCAAATG...CAAAGTATGGCCAGGGGGcAGTCGGACTTGGGATTGGAGAGAAACAGGAACTGAG|AGGGGGTCATCTTAAATGAGAAAAGCTTCCAGGGTGCTTTGGAGTTTAAGAACGTGCATTTTGCCTATCCAGCTCGCCCAGAGGTGCCCATATTTCAGGATTTCAGCCTTTCCATTaCGTCAGGATCTGTCACGGCACTGGTTcGCCCAAGTGGTTCTGGCAAATCAACAGTGC...GAAGGTGTCATTTGCAGGGGCATGACAGCTgATACAGAGGCCTTTAGAGCTTTTTGTGTGTAATGTGTCCTACCTCTTCAAGCCCAGAGTGACTTCCCCA...TTGCTGAGAACATTGCTTATGGTGCTGATGACCCTTCCTCTGTGACCGCTGAGGAAATCCAGAGAGTGGCTGAAGTGGCCAATGCAGTGGCCTTCATCCGG KVWPGGSRTWDWRETGTE|rgss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11684 HEG1::SLC12A8 ENSG00000173706.15::ENSG00000221955.11 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2050 TRUE 795 HEG1 ENSG00000173706.15 protein_coding - - chr3:124965710-125055997:- chr3:124977859:- chr3:124684554-124774841:- chr3:124696703:- SLC12A8 ENSG00000221955.11 protein_coding - - chr3:125082636-125212864:- chr3:125110335:- chr3:124801480-124931708:- chr3:124829179:- chr3:124974898 chr3:125116344 NA NA chr3:124693742 chr3:124835188 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calcium-binding_EGF_domain(100%),EGF-like_domain(100%)|Amino_acid_permease(28%) EGF(100%),EGF_CA(100%)|AA_permease(2%) 1 3 3 502 133 ENST00000311127.9 ENST00000469902.6 upstream downstream none GATACTTTCAGTTCAACAAGATGGACCACTCCTGCCGAG___CATGTGAAGATGGATATAGGCTTtAAAATGAAACCTGCATGAG...TCACTGTGGTGATCGCAGCCGCGGGAGGTGGGCTCCTGCTCATCCTAGGCATCGCACTGATTGTTACCTGTTGCAG|GTATCCCTCATGGGCTTCCTGTTCCTTTTGGGCTTATACATCTCGTCCCTGGCTTCCTGCATGGGAGGACTTTATGGAGCTCCCCGCATCCTGCAGTGCATTGCCCAGGAGAAAGTGATCCCTGCACTTGCCTGTCTGGGACAAGGG___AAGGGGCCAAACAAAACACCCGTGGCTGCCATCTGCCTGACCAGCTTGGTGACCATGGCCTTTGTTTTTGTGGGTCAAGTGAA TVVIAAAGGGLLLILGIALIVTCCr|ypswascsfwaytsrpwlpawedfmelpascsalprrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Stomach adenocarcinoma,Adrenocortical carcinoma LUNG,BREAST,STOMACH,ADRENAL_GLAND exact 124774419,124696703,124774419,124774419|124774419 FALSE,TRUE,FALSE,FALSE|FALSE 124854626,124811042,124829179,124839530|124829179 FALSE,FALSE,TRUE,FALSE|TRUE YES,YES,PARTIALLY,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11685 HEG1::SLC12A8 ENSG00000173706.15::ENSG00000221955.11 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2050 TRUE 795 HEG1 ENSG00000173706.15 protein_coding - - chr3:124965710-125055997:- chr3:124990787:- chr3:124684554-124774841:- chr3:124709631:- SLC12A8 ENSG00000221955.11 protein_coding - - chr3:125082636-125212864:- chr3:125110335:- chr3:124801480-124931708:- chr3:124829179:- chr3:124974898 chr3:125116344 NA NA chr3:124693742 chr3:124835188 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calcium-binding_EGF_domain(100%),EGF-like_domain(100%)|Amino_acid_permease(28%) EGF(100%),EGF_CA(100%)|AA_permease(2%) 1 0 3 292 133 ENST00000311127.9 ENST00000469902.6 upstream downstream none CGGTGGTGATCTCACTGCAAACAACCTTTTCCCTGGCCTCCAATGTGACGCTATTTGACCTGGaTGATAGGcTGCAGtAATGTGTCAACTCCTGCAAGTCC...AGATGGATATAGGCTTGAAAATGAAACCTGCATGAG___TTGCCCATTTGGCCTTGGTGGTCTCAACTGTGGAAACC|GTATCCCTCATGGGCTTCCTGTTCCTTTTGGGCTTATACATCTCGTCCCTGGCTTCCTGCATGGGAGGACTTTATGGAGCTCCCCGCATCCTGCAGTGCATTGCCCAGGAGAAAGTGATCCCTGCACTTGCCTGTCTGGGACAAGGG___AAG DGYRLENETCMSCPFGLGGLNCGN|riphglpvpfglihlvpgflhgrtlwssphpavhcpgesdpctclsgtre NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Stomach adenocarcinoma,Adrenocortical carcinoma LUNG,BREAST,STOMACH,ADRENAL_GLAND exact 124774419,124696703,124774419,124774419|124774419 FALSE,FALSE,FALSE,FALSE|FALSE 124854626,124811042,124829179,124839530|124829179 FALSE,FALSE,TRUE,FALSE|TRUE YES,YES,PARTIALLY,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11702 DHX35::MTHFD1L ENSG00000101452.15::ENSG00000120254.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHX35 ENSG00000101452.15 protein_coding + + chr20:38962299-39039723:+ chr20:39014934:+ chr20:37590942-37668366:+ chr20:37643577:+ MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:151092467:+ chr6:151186815-151423023:+ chr6:151413603:+ chr20:39016193 chr6:151054857 NA NA chr20:37644836 chr6:151375993 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Helicase_associated_domain_(HA2)(10%),Helicase_conserved_C-terminal_domain(100%)|Formate--tetrahydrofolate_ligase(4%) HA2(0%),Helicase_C(100%)|FTHFS(0%) 0 2 2 161 327 ENST00000373325.6 ENST00000611279.4 downstream upstream duplicates(1) GATGGTTCAAGCCTTGGAGTTACTGTATGCTCTGGGAG|ATGAGCACCATGCCAGGACTGCCCACCCGGCCCTGCTTTTATGACATAGATCTTGATACCGAAACAGAACAAGTTAAAGGCTTGTTCTAAGTGGACAAGGCTCTCACAGGACCCGATGCAG___ACTCCTGAAACAGACTACTCTTTG...AAAAATGTCTGTTATGCAATGCTGGAGACgTGGTGAAATAGGCCAAAGATTTCTTCTTCGTTCAAGATGAATTCTGTTCACAGTGGAGTATGGTGTTCGGCAAAAGGACCTCCACCAAGACTGAAAGAAACTAATTTATTTCTGTTTCTGTGGAGTTTCCATTATTTCTACTGCTTAC MVQALELLYALG|dehhartahpalll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA TRUE hsa-mir-12131 chr6:151102675-151102776:+ FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11704 FTO::ENSG00000260658 ENSG00000140718.22::ENSG00000260658.7 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FTO ENSG00000140718.22 protein_coding + + chr16:53701692-54158512:+ chr16:53934109:+ chr16:53735604-54192424:+ chr16:53968021:+ ENSG00000260658 ENSG00000260658.7 lncRNA - - chr16:63314264-63618046:- chr16:63334667:- chr16:63348168-63651950:- chr16:63368571:- chr16:53958886,chr16:53958883 chr16:63437222,chr16:63437225 NA NA chr16:53992798,chr16:53992795 chr16:63471126,chr16:63471129 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none FTO_C-terminal_domain(67%),FTO_catalytic_domain(100%)| FTO_CTD(20%),FTO_NTD(100%)| 1 0 2 277 4 ENST00000637969.1 ENST00000568932.5 downstream downstream duplicates(2) CAGGAACCTTGGATTATATTTTACAACGCTGTCAGTTGGCTCTGCAGAATGTCTGTGACGATGTGGACAATGATGATGTCTCTTTGAAATCCTTTGAGCCT...CTCAACTGGAAGCACTGTGGAAGAAGATGGAGGGTGTG___ACAAATGCTGTGCgTCATGAAGTTAAAAGAGAGGGGCTCCCCGTGGAACAAAGGAATGAAAT...AATGGCATGCCAG|GGGCACCAAGAGATTTCTGACAAAGGGCATTAAAACTGAGAAAGTTTGGGAACCTCTGAATGCTGTAG___GACTTGCATTTACGTTCTAA...___GACAGTTTCAAGACAACTCTGTGAGGcAA WHAr|gtkrfltkgiktekvweplnavglaftf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11709 SMAD6::ZWILCH ENSG00000137834.15::ENSG00000174442.12 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2053 FALSE NA SMAD6 ENSG00000137834.15 protein_coding + + chr15:66702236-66782849:+ chr15:66716498:+ chr15:66994574-67075187:+ chr15:67008836:+ ZWILCH ENSG00000174442.12 protein_coding + + chr15:66504959-66550130:+ chr15:66527857:+ chr15:66797297-66842468:+ chr15:66820195:+ chr15:66717054 chr15:66508847 NA NA chr15:67009392 chr15:66801185 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none MH1_domain(100%)|RZZ_complex__subunit_zwilch(49%) MH1(100%)|Zwilch(49%) 0 1 0 546 538 ENST00000288840.10 ENST00000307897.10 downstream upstream none ACCAACTCCCTCATCACTGCTCCGGGTGAATTCTCAG|ACTTAAATAAGCTGGATGGATTTGGTGATTCTACAAAAAAAGACACTGAGGTTGAG___ACCTTGAAGCATGACACTGCTGCAGTCGATCGTTCCGTCAAGCGTCTTTTCAAAGTTCGGAGTGATCTTGATTTTGCTGAGCAACTGTGGTGCAAA TNSLITAPGEFS|dLNKLDGFGDSTKKDTEVETLKHDTAAVDRSVKRLFKVRSDLDFAEQLWC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11720 SNHG12::RPS19 ENSG00000197989.15::ENSG00000105372.8 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNHG12 ENSG00000197989.15 lncRNA - - chr1:28578538-28583132:- chr1:28581590:- chr1:28905050-28909644:- chr1:28908102:- RPS19 ENSG00000105372.8 protein_coding + + chr19:41860255-41872925:+ chr19:41869031:+ chr19:42364325-42376993:+ chr19:42373101:+ chr1:28581424 chr19:41867991 NA NA chr1:28907936 chr19:42372061 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Ribosomal_protein_S19e(60%) |Ribosomal_S19e(22%) 7 0 1 352 21537 ENST00000648127.1 ENST00000598742.6 upstream upstream mismatches(1) CGACTTACTAGCTGCAAGCCTCTGCCTGCCTTCCTGCGCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCAGTGAGAGGGGCGGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAG|CTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGGGGACGTCAGAGAAACGGCG...CTTCAGCCGAGGCTCCAAG?GTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6797 chr19:41869627-41869698:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11724 XRRA1::RNF169 ENSG00000166435.17::ENSG00000166439.6 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XRRA1 ENSG00000166435.17 protein_coding - - chr11:74807739-74949200:- chr11:74930300:- chr11:74518784-74660245:- chr11:74641345:- RNF169 ENSG00000166439.6 protein_coding + - chr11:74748849-74842413:+ chr11:74754816:- chr11:74459894-74553458:+ chr11:74465861:- chr11:74929524,chr11:74929526 chr11:74771872,chr11:74771874 NA NA chr11:74640569,chr11:74640571 chr11:74482917,chr11:74482919 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none none none 0 1 5 74 11 ENST00000684022.1 unknown upstream downstream mismappers(1),mismatches(1) GGACCTTCCTGGACATATCCTGGACCAGGCTTTTCTG___CTGAAGCACCACTGTGTGAGGAAGCCATCAGATCTGTGCACCATTAATGTGAGTGGCCTGAAGTTCTCCAAG___GCCAAGGAAAATGACTTCAAGCATTTTCATTCTGTGATTTATATCAATGCCTCAGAAAACCTGCTGCCTCTAG|AGAGAGTCTCGCTCTGTCGCCCAGACTGaAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTACCTCCCGGGTTGAAGCGAATCTCCTGCCTCAGCCTCCCGGTAGCTGGGACTATAAGCGTGCACCACCACGTCCGGCTAATTCTTGTGTTTTTAGTAAAGACAGGGTTTCCCCATGTTGGCCAGGCTGGTCTCAAACTCCTGGCCACAACTGATCCGCCCACCTCTGCTTCTCAAAGTGC...AGATGTGAGCCACCGCGCCTGGCCTATCTATTCAATTTCTGAAAAGCACTTTTAACACCACGAAGATAAAAAAATTTAAACTGCCAATTTAAAAGATTCAC DLPGHILDQAFLLKHHCVRKPSDLCTINVSGLKFSKAKENDFKHFHSVIYINASENLLPL|ervslcrpd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11726 SMARCC2::CS ENSG00000139613.12::ENSG00000062485.19 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMARCC2 ENSG00000139613.12 protein_coding - - chr12:56162359-56189567:- chr12:56165318:- chr12:56556143-56583351:- chr12:56559102:- CS ENSG00000062485.19 protein_coding - - chr12:56271699-56300391:- chr12:56283857:- chr12:56665483-56694175:- chr12:56677641:- chr12:56164947,chr12:56164954 chr12:56284014,chr12:56284018 NA NA chr12:56558731,chr12:56558738 chr12:56677798,chr12:56677802 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Myb-like_DNA-binding_domain(100%),SWIRM-associated_domain_at_the_C-terminal(100%),SWIRM-associated_domain_at_the_N-terminal(100%),SWIRM-associated_region_1(100%),SWIRM_domain(100%)|Citrate_synthase__C-terminal_domain(100%) Myb_DNA-bind_6(100%),Myb_DNA-binding(100%),SWIRM(100%),SWIRM-assoc_1(100%),SWIRM-assoc_2(100%),SWIRM-assoc_3(100%)|Citrate_synt(39%) 3 0 3 113 1001 ENST00000550164.6 ENST00000549143.5 upstream downstream duplicates(2),mismatches(1) AGACTATCATGGACCGGGAGCGAGAAGCA___CTGGAGTATCAGAGGCAGCAGCTCCTGGCCGACAGACAAGCCTTCCACATGGAGCAGCTGAAGTATGCGGAG...CAGATGCACCAACAGCAGCAGCAGCCACCACCAGCCCTGCCCCCAGGCTCCCAGCCTATCCCCCCAACAGGGGCTGCTGGGCCACCCGCAGTCCATGGCTTGGCTGTGGCTCCAGCCTCTGTAGTCCCTGCTCCTGCTGGCAGTGGGGCCCCTCCAGGAAGTTTGGGCCCTTCTGAACAGATTGGGCAGGCAGGGTCAACTGCAGGGCCACAGCAGCAGCAACCAGCTGGAGCCCCCCAGCCTGGGGCAGTCCCACCAGGGGTTCCCCCCCCTGGACCCCATG|ATGTATGGTGGCATGAGAGGCATGAAGGGATTGGTCTATGAAACATCAGTTCTTGATCCTGATGAG___GGCATCCGTTTCCGAGGCTTTAGTATCCCTGAATGCCAGAAACTGCTACCCAAGGCTAA QMHQQQQQPPPALPPGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQPAGAPQPGAVPPGVPPPGPH|dVWWHERHEGIGL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 56561844|56561844|56561844 FALSE|FALSE|FALSE 56680429|56694004|56680404 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11739 ARHGEF10L::LINC01899 ENSG00000074964.17::ENSG00000265352.1 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF10L ENSG00000074964.17 protein_coding + + chr1:17539698-17697874:+ chr1:17539950:+ chr1:17866193-18024369:+ chr1:17866445:+ LINC01899 ENSG00000265352.1 lncRNA - - chr18:71732615-71788128:- chr18:71736554:- chr18:69399851-69455364:- chr18:69403790:- chr1:17543669 chr18:71769677 NA NA chr1:17870164 chr18:69436913 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 3 0 0 10 ENST00000361221.8 ENST00000583756.1 downstream downstream duplicates(1) GTGAGCGGCGCGGACGACAAAGGCGCGGGCCCGGGCAGCCGAG|AAGCTGACTCCACCAGAGACCCGATTCTTGAACTTTTAATGCACATTTGGAAATCC?GTGTTTAGTTGGCTTAGATTATAAACTGCAGGAGAACAAGAAGTGTATCAATTATGTTCCAGTTTCTAGGATGTA___AGGCTATTCCGTATACTTACTAGAATATATGAGTTTTACAAATTG...ATCAAAGAGAAGTGGCCCTGGAGCTCTCCCCATGAAAAGATTAAATTTTTAAGAAGATGCcGCTCACCTAAAACTTATCAATAAAGTCAACTATAGTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho guanine nucleotide exchange factor 10 like 2 lymphoma leukaemia_lymphoma TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 11741 BLVRA::STK17A ENSG00000106605.11::ENSG00000164543.7 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BLVRA ENSG00000106605.11 protein_coding + + chr7:43758680-43807342:+ chr7:43771170:+ chr7:43798279-43846941:+ chr7:43810769:+ STK17A ENSG00000164543.7 protein_coding + + chr7:43582758-43650713:+ chr7:43608256:+ chr7:43622357-43690312:+ chr7:43647855:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Protein_kinase_domain(70%) |ABC1(48%),Coa1(100%),PK_Tyr_Ser-Thr(39%),Pkinase(39%) 0 3 0 806 248 ENST00000265523.9 ENST00000648544.1 downstream upstream none CCGGAGGCTGCACGGAGAGCGGTGCCCGCGTCAG___TGACCGAAGGAAGAGACCAAGATGAATGCAGAG|TGCTGCTGGGGGTGAAATCTTTGACCAGTGTGTTGCAGACAGAGAAGAAGCCTTTAAAGAAAAAGATGTTCAAAGACTTATGCGACAGATTTTAGAAGGTGTTCACTTTTTACACACTCGTGATGTAGTTCATCTTGATTTGAAG___CCTCAGAATATTCTGTTG...TGAAGAGCTCCGAGAAATTATGGGTACCCCTGAATATGTGG___CTCCTGAAATTCTTAGTTATGATCCTATAAGCATGGaAACAGATATGTG___GAGCATTGGAG MNAE|ccwg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Biliverdin reductase A Atypical BLVRA P53004 TRUE FALSE Serine/threonine-protein kinase 17A CAMK DAPK Q9UEE5 TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11743 HMOX2::EFCAB5 ENSG00000103415.12::ENSG00000176927.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HMOX2 ENSG00000103415.12 protein_coding + + chr16:4474690-4510347:+ chr16:4476487:+ chr16:4524691-4560348:+ chr16:4526488:+ EFCAB5 ENSG00000176927.16 protein_coding + + chr17:29929200-30108452:+ chr17:29942240:+ chr17:28256218-28435470:+ chr17:28269258:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none none none 0 2 0 654 7 ENST00000619528.4 ENST00000394835.8 downstream upstream duplicates(1) GCTGGCGGACAGGCGACAGCGACCTGCGGCAG|GAAAACAGAAAAGAAGACAAAGAGAGGAAATGGAACTTAACTGAAGTGAAAGAGCTTCATGAG___ACCTTACAGAGTGTGCCAGACGTTCCTGTAAAAGAGGACACCAACAGTGTGGTGGAGAAAGCAATGGATGAAATCAAATCCCAAG___GCAAAGAATTTATAATGAAG...TGATGCCAGTGGGGGAAGGACAAGATGTGCAGACAGTGAAGCTGTCAATAGGTCATTTTCTCTGCGTGTGGAAATCTTGCTTCTCTAGCCTAAACATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11776 TPM1::TLN2 ENSG00000140416.25::ENSG00000171914.17 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1158 TRUE 2060 TRUE 796 TPM1 ENSG00000140416.25 protein_coding + + chr15:63042620-63071915:+ chr15:63062645:+ chr15:63334819-63364114:+ chr15:63354844:+ TLN2 ENSG00000171914.17 protein_coding + + chr15:62390526-62844631:+ chr15:62805600:+ chr15:62682725-63136830:+ chr15:63097799:+ chr15:63065932,chr15:63065930 chr15:62801713,chr15:62801708 NA NA chr15:63358131,chr15:63358129 chr15:63093912,chr15:63093907 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Tropomyosin(79%),Tropomyosin_like(100%)|I/LWEQ_domain(46%) Tropomyosin(68%),Tropomyosin_1(100%)|I_LWEQ(67%) 30 106 105 4748 347 ENST00000357980.9 ENST00000636159.2 downstream upstream duplicates(49),mismatches(8) GCTGAGAAG___TACTCGCAGAAGGAAGACAGATATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG___GCTGAGACTCGGGCTGAGTTTGCGGAGAGGTCAGTAACTAAATTGGAGAAAAGCATTGATGACTTAGAAG|GTGTTCCAGTCAAAAGACGTACCTGAAAAGACATCATCACCTGAAGAATCCATAAGGATGACGAAAGGCATCACCATGGCAACAGCCAAAGCCGTGGCAGCTGGGAACTCATGTAGACAGGAGGACGTGATTGCTACTGCCAACCTGAGCCGGAAAGCCGTGTCAGATATGTTGACGGCTTGCAAG___CAAGCATCCTTCCACCCCGATGTCAGTGACGAGGTGAGAACCAGAGCCTTGCGTTTCGGGACGGAGTG AEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE|gvpvkrrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-190a chr15:62823957-62824041:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11777 TPM1::TLN2 ENSG00000140416.25::ENSG00000171914.17 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1159 TRUE 2060 TRUE 796 TPM1 ENSG00000140416.25 protein_coding + + chr15:63042620-63071915:+ chr15:63062277:+ chr15:63334819-63364114:+ chr15:63354476:+ TLN2 ENSG00000171914.17 protein_coding + + chr15:62390526-62844631:+ chr15:62805600:+ chr15:62682725-63136830:+ chr15:63097799:+ chr15:63065932,chr15:63065930 chr15:62801713,chr15:62801708 NA NA chr15:63358131,chr15:63358129 chr15:63093912,chr15:63093907 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Tropomyosin(73%),Tropomyosin_like(100%)|I/LWEQ_domain(46%) Tropomyosin(67%),Tropomyosin_1(100%)|I_LWEQ(67%) 12 9 64 4738 347 ENST00000358278.7 ENST00000636159.2 downstream upstream duplicates(10),mismatches(4) GGGCTGAGCTCTCAGAAGG___CCAAGTCCGACAGCTGGAAGAACAATTAAGAATAATGGATCAGACCTTGAAAGCATTAATGGCTGCAGAGGATAAG___TACTCGCAGAAGGAAGACAGATATGAGGAAGAGATCAAGGTCCTTTCCGACAAGCTGAAGGAG|GTGTTCCAGTCAAAAGACGTACCTGAAAAGACATCATCACCTGAAGAATCCATAAGGATGACGAAAGGCATCACCATGGCAACAGCCAAAGCCGTGGCAGCTGGGAACTCATGTAGACAGGAGGACGTGATTGCTACTGCCAACCTGAGCCGGAAAGCCGTGTCAGATATGTTGACGGCTTGCAAG___CAAGCATCCTTCCACCCCGATGTCAGTGACGAGGTGAGAACCAGAGCCTTGCGTTTCGG AELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSDKLKE|VFQSKDVPEKTSSPEESIRMTKGITMATAKAVAAGNSCRQEDVIATANLSRKAVSDMLTACKQASFHPDVSDEVRTRALRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-190a chr15:62823957-62824041:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11784 GGA3::MUC20 ENSG00000125447.18::ENSG00000176945.18 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1163 FALSE NA FALSE NA GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75241400:- chr17:73232694-73258444:- chr17:73237481:- MUC20 ENSG00000176945.18 protein_coding + + chr3:195720884-195741123:+ chr3:195724680:+ chr3:195447755-195467994:+ chr3:195451551:+ chr17:75241255,chr17:75241264 chr3:195722695,chr3:195722686 NA NA chr17:73237336,chr17:73237345 chr3:195449566,chr3:195449557 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none GAT_domain(100%),N-terminal_extension_of_GAT_domain(100%),VHS_domain(100%)| GAT(100%),GGA_N-GAT(100%),VHS(100%)| 34 11 30 860 150 ENST00000578348.5 ENST00000436408.6 upstream upstream duplicates(11),mismatches(19) CGGGGACAGAGAGCTGATGAAG___GAGCTGTTTGATCAGTGTGAGAACAAGAGGCGGACTTTATTTAAACTCGCCAGTGAGACTGAGGACAATGATAACAGTTTGG___GGGACATCCTGCAAGCCAGTGACAACCTCTCCCGGGTCATCAACTCTTACAAAACAATTATTGAAGGGCAGGTCATCAATGGCGAGGTGGCTACCTTAACCCTGCCTGACTCGGAAG|GCCCCAGCACCCGCAGAGCAGACACTGCGATGACAACGGACGACACAGAAGTGCCCGCTATGACTCTAGCACCGGGCCACGCCGCTCTGGAAACTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGACCAGGGGAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGAGTTTCACAAAAACATCTCCCAACTTCATGGTGCTGATCGCCACCTCCGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAG GDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPDSE|gPSTRRADTAMTTDDTEVPAMTLAPGHAALETQTLSAETSSRASTPAGPIPEAETRGAKRISPARETRSFTKTSPNFMVLIATSVETSAASGSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11785 GGA3::MUC20-OT1 ENSG00000125447.18::ENSG00000242086.8 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75241400:- chr17:73232694-73258444:- chr17:73237481:- MUC20-OT1 ENSG00000242086.8 lncRNA + + chr3:195658062-195739964:+ chr3:195724680:+ chr3:195384933-195466835:+ chr3:195451551:+ chr17:75241255,chr17:75241264 chr3:195722695,chr3:195722686 NA NA chr17:73237336,chr17:73237345 chr3:195449566,chr3:195449557 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none GAT_domain(100%),N-terminal_extension_of_GAT_domain(100%),VHS_domain(100%)| GAT(100%),GGA_N-GAT(100%),VHS(100%)| 34 11 30 860 150 ENST00000578348.5 ENST00000599566.5 upstream upstream duplicates(11),mismatches(19) CGGGGACAGAGAGCTGATGAAG___GAGCTGTTTGATCAGTGTGAGAACAAGAGGCGGACTTTATTTAAACTCGCCAGTGAGACTGAGGACAATGATAACAGTTTGG___GGGACATCCTGCAAGCCAGTGACAACCTCTCCCGGGTCATCAACTCTTACAAAACAATTATTGAAGGGCAGGTCATCAATGGCGAGGTGGCTACCTTAACCCTGCCTGACTCGGAAG|GCCCCAGCACCCGCAGAGCAGACACTGCGATGACAACGGACGACACAGAAGTGCCCGCTATGACTCTAGCACCGGGCCACGCCGCTCTGGAAACTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGACCAGGGGAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGAGTTTCACAAAAACATCTCCCAACTTCATGGTGCTGATCGCCACCTCCGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAG GDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPDSE|gpstrradtamttddtevpamtlapghaaletqtlsaetssrastpagpipeaetrgakrisparetrsftktspnfmvliatsvetsaasgsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11786 CREBBP::SLX4 ENSG00000005339.15::ENSG00000188827.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3879832:- chr16:3775055-3930714:- chr16:3929833:- SLX4 ENSG00000188827.12 protein_coding - + chr16:3581181-3611606:- chr16:3588587:+ chr16:3631182-3661607:- chr16:3638588:+ chr16:3851815,chr16:3851827 chr16:3583509,chr16:3583497 NA NA chr16:3901816,chr16:3901828 chr16:3633510,chr16:3633498 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 9 24 8 57 59 ENST00000262367.10 unknown upstream upstream duplicates(11),mismatches(2) CGGGCCCTCGCCGGCCCGGCCGCCCGTGCCCGGGGCTGTTTTCGCGAGCAGGTGAAAATGGCTGAGAACTTGCTGGACGGACCGCCCAACCCCAAAAGAGCCAAACTCAGCTCGCCCGGTTTCTCGGCGAATGACAGCACAG|GTAAAAGTGGAATTGCTGGGTCCTGCAGTCAATCTACGGTTAACATTCTGGAGAACCACCCTGGTCCAATCTTAAGGCATGCCGATACTTGCTGAATGAGTTGTGGCCTTTGGAGGTGCCGGCTCCGTGTTCTGGAGAAGGGTCCACAGATGTGGATTTTTAACACATGCCCAG___ATGCCTCTGAGATCGAATACATATGAAC MAENLLDGPPNPKRAKLSSPGFSANDST|gksgiagscsqstvnilenhpgpilrhadtc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 11787 VPS33A::SYNE1 ENSG00000139719.11::ENSG00000131018.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1164 FALSE NA FALSE NA VPS33A ENSG00000139719.11 protein_coding - - chr12:122229564-122266494:- chr12:122266307:- chr12:122714111-122751041:- chr12:122750854:- SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152135232:- chr6:152442822-152958936:- chr6:152456367:- chr12:122264347,chr12:122264355 chr6:152136694,chr6:152136699 NA NA chr12:122748894,chr12:122748902 chr6:152457829,chr6:152457834 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sec1_family(0%)|Nuclear_envelope_localisation_domain(100%) Sec1(0%)|KASH(100%) 5 8 13 204 51 ENST00000267199.9 ENST00000367255.10 upstream downstream duplicates(10),mismatches(1) GGGTGGTGGAGCAAGATGGCGGCTCATCTGTCCTACGGCCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGCGCAGGAAGCAAG|GGTTTCCATGAAATGAGCCATGGTTTGCTTCTTATGCTGGAGAACATTGACAGAAGGAAAAATGAAATTGTCCCTATTGATTCTAACCTTGATGCAGAGATACTTCAGGACCATCACAAACAGCTTATG___CAAATAAAGCATGAGCTGTTGGAATCCCAACTCAGAGTA MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSK|GFHEMSHGLLLMLENIDRRKNEIVPIDSNLDAEILQDHHKQLMQIKHELLESQLR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11800 ENSG00000256861::SYNE1 ENSG00000256861.1::ENSG00000131018.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000256861 ENSG00000256861.1 protein_coding - - chr12:122207779-122266423:- chr12:122266307:- chr12:122692326-122750970:- chr12:122750854:- SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152135232:- chr6:152442822-152958936:- chr6:152456367:- chr12:122264347,chr12:122264355 chr6:152136694,chr6:152136699 NA NA chr12:122748894,chr12:122748902 chr6:152457829,chr6:152457834 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Nuclear_envelope_localisation_domain(100%) Sec1(0%)|KASH(100%) 4 8 12 204 51 ENST00000535844.1 ENST00000367255.10 upstream downstream duplicates(10),mismatches(1) GGGTGGTGGAGCAAGATGGCGGCTCATCTGTCCTACGGCCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGCGCAGGAAGCAAG|GGTTTCCATGAAATGAGCCATGGTTTGCTTCTTATGCTGGAGAACATTGACAGAAGGAAAAATGAAATTGTCCCTATTGATTCTAACCTTGATGCAGAGATACTTCAGGACCATCACAAACAGCTTATG___CAAATAAAGCATGAGCTGTTGGAATCCCAACTCAGAGT MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSK|GFHEMSHGLLLMLENIDRRKNEIVPIDSNLDAEILQDHHKQLMQIKHELLESQLR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11801 HMGCR::RIMS2 ENSG00000113161.17::ENSG00000176406.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1165 TRUE 2063 TRUE 797 HMGCR ENSG00000113161.17 protein_coding + + chr5:75336329-75364001:+ chr5:75350949:+ chr5:74632154-74659826:+ chr5:74646774:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103697086:+ chr8:104512838-105266658:+ chr8:104709314:+ chr5:75351354 chr8:103672778 NA NA chr5:74647179 chr8:104685006 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sterol-sensing_domain_of_SREBP_cleavage-activation(100%)|C2_domain(100%),FYVE-type_zinc_finger(65%),PDZ_domain(100%) Patched(100%),Sterol-sensing(100%)|C2(100%),FYVE_2(26%),PDZ(100%),PDZ_6(100%) 7 6 9 358 28 ENST00000680940.1 ENST00000666250.1 downstream upstream duplicates(11),mismatches(1) CCAACTACTTCGTGTTCATGACTTTCTTCCCAGCTTGTGTGTCCTTGGTATTAGAG___CTTTCTCGGGAAAGCCGCGAGGGTCGTCCAATTTGGCAGCTCAGCCATTTTGtCCGcGTTTTAGAAGAAGAAGAAAATAAGCCGAATCCTGTAACTCAGAGGGTCAAGATGATTATG___TCTCTAGGCTTGGTTCTTGTTCATGCTCACAGTCGCTGGATAGCTGATCCTTCTCCTCAAAACAGTACAGCAGATACTTCTAAGGTTTCATTAGGACTGGATGAAAATGTGTCCAAGAGAATTGAACCAAGTGTTTCCCTCTGGCAGTTTTATCTCTCTAA|AAAACTGCATCAGCAGTTTGAAATGTATAAAGAGCAGGTAAAGAAGATGGGAGAAGAATCACAGCAACAGCAAGAACAGAAGGGTGATGCGCCAACCTGTGGTATCTGCCACAAAACAAAGTTTGCTGATGGATGTGGCCATAACTGTTCATATTGCCAAACAAAGTTCTGTGCTCGTTGTGGAGGTCGAGTGTCATTACGCTCAAACAAG___GTTATGTGGGTATGTAATTTGTGCCGAAAACAACAAGAAAT NYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFvRVLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKRIEPSVSLWQFYLSk|KLHQQFEMYKEQVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11802 HMGCR::RIMS2 ENSG00000113161.17::ENSG00000176406.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2063 TRUE 797 HMGCR ENSG00000113161.17 protein_coding + + chr5:75336329-75364001:+ chr5:75350374:+ chr5:74632154-74659826:+ chr5:74646199:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103697086:+ chr8:104512838-105266658:+ chr8:104709314:+ chr5:75351354 chr8:103672778 NA NA chr5:74647179 chr8:104685006 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Sterol-sensing_domain_of_SREBP_cleavage-activation(100%)|C2_domain(100%),FYVE-type_zinc_finger(65%),PDZ_domain(100%) Patched(92%),Sterol-sensing(100%)|C2(100%),FYVE_2(26%),PDZ(100%),PDZ_6(100%) 1 0 2 305 28 ENST00000680940.1 ENST00000696799.1 downstream upstream none GGGAAAGCCGCGAGGGTCGTCCAATTTGGCAGCTCAGCCATTTTGCCCGAGTTTTAGAAGAAGAAGAAAATAAGCCGAATCCTGTAACTCAGAGGGTCAAGATGATTATG|AAAACTGCATCAGCAGTTTGAAATGTATAAAGAGCAGGTAAAGAAG...AACAGCAAGAACAGAAGGGTGATGCGCCAACCTGgGGTATCTGCCACAAAACAAAGTTTGCTGATGGATGTGGCCATAACTGTTCATATTGCCAAACAAAG ESREGRPIWQLSHFARVLEEEENKPNPVTQRVKMIM|ktasav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11803 PPFIA1::NAALADL2 ENSG00000131626.19::ENSG00000177694.16 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70272436:+ chr11:70116796-70231418:+ chr11:70118542:+ NAALADL2 ENSG00000177694.16 protein_coding + - chr3:174438573-175810548:+ chr3:174821748:- chr3:174156363-175528336:+ chr3:174539538:- chr11:70317656,chr11:70317657 chr3:174951164,chr3:174951163 NA NA chr11:70163762,chr11:70163763 chr3:174668954,chr3:174668953 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 4 7 6 190 21 ENST00000253925.12 unknown downstream downstream duplicates(2),mismatches(1) GAGGAGGTGGAGGCCATGGTTCCGGCTCCCCTTCACAGCCAGATGCAGATTCACATTTTGAACAGTTGATGGTCTCCATGCTAGAAGAAAGGGACCGCCTTCTTGATACACTGAGAGAGACTCAAGAAACGCTGGCCTTAACCCAGGGGAAGTTACACGAGGTTGGTCATGAAAGAGATTCCTTGCAGAGACAGCTCAACACGGCACTTCCACAG|ATAATTGGCTCCCTGCCCAGGATTGAACACAGAAGGCTCTGAGAAGCACCAGAAGTTCTACCATAAGCTTCTGAAGTCAGCTGACAACCACTGAGTCCTCTGGGAAGTCAGAACTCTGTGTAATTGCCCAAATCTCCTCCAGGCCTAGCTAGACTTGACTTCAGTGACTAGTGGTTCATTTGCTCAATCTGTCTGATAGCTCACCAGGGGAAAACAGGCTTTTCATCACTTGT GGGGHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQ|iigslpriehrrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11804 MACROD2::SEL1L2 ENSG00000172264.19::ENSG00000101251.13 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MACROD2 ENSG00000172264.19 protein_coding + + chr20:13995369-16053197:+ chr20:14085728:+ chr20:13976015-16033842:+ chr20:14066374:+ SEL1L2 ENSG00000101251.13 protein_coding - + chr20:13849247-13996443:- chr20:13902536:+ chr20:13829893-13977089:- chr20:13883182:+ chr20:14405901,chr20:14405900 chr20:13899647,chr20:13899643 NA NA chr20:14386547,chr20:14386546 chr20:13880293,chr20:13880289 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Macro_domain(2%)| Macro(0%)| 4 3 8 41 19 ENST00000217246.8 unknown downstream upstream duplicates(3),mismatches(1) CGCAAAGAATACCTAAGAGACTATATTCCCCTGAACAGCATTCTATCATGGAAGGAGGAGATGAAGGGCAAGGGCCAAAATGATG___AAGAAAATACTCAGGAAACATCCCAGGTGAAGAAAAGTTTGACTGAAAAAGTTTCTCTCTATAGAGGTGACATCACATTGCTAGAGGTAGATGCTATAGTCAATGCCG|CTTTAGCCGGTGGGAGCCTATTTGAGTTGGATCCTCCATCCCTTGGTCATGACTCTAATTTCCTGACACCATCCTTCCTATCAG___GAAAGTGGACCATAAAGGCTGTTACTGCCAATGGAAGGCATCTGGGATCCTGGTACTCCTCTCAC?CTTG...CCAATATTAGATTTTTATTTTTC RKEYLRDYIPLNSILSWKEEMKGKGQNDEENTQETSQVKKSLTEKVSLYRGDITLLEVDAIVNA|alaggslfeldppslghdsnfltpsflsgkwtikavtangrhlgswyssh? NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11805 RERE::CLSTN1 ENSG00000142599.20::ENSG00000171603.18 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2064 TRUE 798 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- CLSTN1 ENSG00000171603.18 protein_coding - - chr1:9728926-9823984:- chr1:9744643:- chr1:9788984-9884042:- chr1:9804701:- chr1:8669695,chr1:8669348,chr1:8669701 chr1:9745076,chr1:9745002,chr1:9745079 NA NA chr1:8729754,chr1:8729407,chr1:8729760 chr1:9805134,chr1:9805060,chr1:9805137 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Concanavalin_A-like_lectin/glucanases_superfamily(100%) |CLSTN_C(100%),Laminin_G_3(100%) 0 11 3 12 1024 ENST00000400908.7 ENST00000377298.9 upstream downstream duplicates(2) CGCAGCCTCCGCGCGGCCTCCCGCCCCATCCCCGCCACTTTCCCCGGAGCTGGGCCGCGAACACCTCACTATTGATGGTGTAGCGCTTTAGGGGAAG|GTGCGGCCGCGGGCACTGCCGAGCTGCTGCCATCCCCGAGTGGATCCCTCAACTGGACCATGGGCCTGCCCACCGACAATGGCCACGACAGCGACCAGGTGTTTGAGTTCAACGGCACCCAGGCAGTGAGGATCCCGGATGGCGTCGTGTCGGTCAGCCCCAAAGAGCCGTTCACCATCTCGGTGTGGATGAGACATGGGCCATTCGGCAGGAAGAAGGAGACAATTCTTTGCAGTTCTGATAAAACAG___ATATGAATCGGCACCACTACTCCCTCTATGTCCACGGGTGCCGGCTGATCTTCCTCTTCCGTCAGGATCCTTCTGAGGAGAAGAAATACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11807 RERE::CLSTN1 ENSG00000142599.20::ENSG00000171603.18 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2064 TRUE 798 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8792404:- chr1:8412457-8908980:- chr1:8852463:- CLSTN1 ENSG00000171603.18 protein_coding - - chr1:9728926-9823984:- chr1:9744643:- chr1:9788984-9884042:- chr1:9804701:- chr1:8669695,chr1:8669348,chr1:8669701 chr1:9745076,chr1:9745002,chr1:9745079 NA NA chr1:8729754,chr1:8729407,chr1:8729760 chr1:9805134,chr1:9805060,chr1:9805137 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Concanavalin_A-like_lectin/glucanases_superfamily(100%) |CLSTN_C(100%),Laminin_G_3(100%) 0 3 3 5 1024 ENST00000337907.7 ENST00000377298.9 upstream downstream none TGGCCATTTGATATAATTCTGGATGGAAGACCTCTTATTTGTATTACATTGAATTAGAG|GTGCGGCCGCGGGCACTGCCGAGCTGCTGCCATCCCCGAGTGGATCCCTCAACTGGACCATGGGCCTGCCCACCGACAATGGCCACGACAGCGACCAGGTGTTTGAGTTCAACGGCACCCAGGCAGTGAGGATCCCGGATGGCGTCGTGTCGGTCAGCCCCAAAGAGCCGTTCACCATCTCGGTGTGGATGAGACATGGGCCATTCGGCAGGAAGAAGGAGACAATTCTTT...GCCCTTCTCTGTGACTGAGGATTACCCGCTCCATCCATCCAAGATAGAAACTCAGCTCGTGGTGGGGGCTTGCTGGCAAG___AGTTTTCAGGAGTTGAAAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11808 PRSS27::ENSG00000249171 ENSG00000172382.10::ENSG00000249171.1 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRSS27 ENSG00000172382.10 protein_coding - - chr16:2712419-2720551:- chr16:2720115:- chr16:2762420-2770552:- chr16:2770116:- ENSG00000249171 ENSG00000249171.1 lncRNA - + chr4:83668510-83731755:- chr4:83717871:+ chr4:84589663-84652908:- chr4:84639024:+ chr16:2719751,chr16:2719754 chr4:83701260,chr4:83701257 NA NA chr16:2769752,chr16:2769755 chr4:84622413,chr4:84622410 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 6 4 3 27 15 ENST00000565903.5 unknown upstream upstream duplicates(1),low_entropy(1),mismatches(5) GTCGGCTCTGGGCGCTTCCTTCCTGAGGAGAGGAGCTGGGCAGGCCGGGCCGACGGGTTGGGCCGCATAGCCGGGCCTGTGCTCATCTCCAGCATAAAACTCCACTTCATGGAGCCTGCACCTCGCTCGTGCTCCAACGCTTCTGCCACCGCCGACCACGGCCCTGCGCCCCAGCCAGGCCTGAGGACATGAGGCGGCCGGCGGCGGTGCCGCTCCTGCTGCTGCTGTGTTTTG|TGAAAGTTACATCGAGTGTGCCTGCCTCTCCTGCCTCTCCTTCCACCTCCTCTAACTCTCCTGCTTCTACCACCCCTGAGACAGCAAGACCAACCTCTCGTCAGCCTATTCAATGTGAAGAAAATAAGGAGGAAGACCTTATGAGGACCTACGTCCAATCAATAAATA___ACTTGCGGGAGGTTCTGGAGTCCCATGGTTgTTAATCTCTG MRRPAAVPLLLLLCF|vkvtssvpaspaspstssnspasttpetarptsrqpiqceenkeedlmrtyvqsinnlrevleshgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11809 FBXL2::CMTM8 ENSG00000153558.17::ENSG00000170293.9 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1166 FALSE NA FALSE NA FBXL2 ENSG00000153558.17 protein_coding + + chr3:33277025-33403662:+ chr3:33375418:+ chr3:33318517-33445154:+ chr3:33416910:+ CMTM8 ENSG00000170293.9 protein_coding + + chr3:32238679-32370321:+ chr3:32357373:+ chr3:32280171-32411813:+ chr3:32398865:+ chr3:33375574,chr3:33376012,chr3:33375570 chr3:32352088,chr3:32351878,chr3:32352081 NA NA chr3:33417066,chr3:33417504,chr3:33417062 chr3:32393580,chr3:32393370,chr3:32393573 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none F-box-like(100%),Leucine_Rich_repeat(78%)|Membrane-associating_domain(88%) F-box(100%),F-box-like(100%),LRR_1(100%),LRR_6(31%)|HRG(9%),MARVEL(9%) 2 6 4 54 54 ENST00000484457.6 ENST00000307526.4 downstream upstream duplicates(2) CTCTGAAACACATTCAGAATTACTGCCATGAGCTTGTGAGCCTCAACTTGCAGTCCTGCTCA___CGTATCACGGATGAAGGTGTGGTGCAGATATGCAGGGGCTGTCACCGGCTACAGGCTCTCTGCCTTTCGGGTTGCAGCAACCTCACAGATGCCTCTCTTACAGCCCTGGGTTTGAACTGTCCGCGACTGCA|GTTCTGGGGCTGCTGGTATGGACGCTTATTGCTGGAACTGAGTACTTCCGGGTCCCCGCATTTGGCTGGGTCATGTTTGTAGCTGTATTTTACTGGGTCCTCACCGTCTTCTTCCTCATTATCTACATAACAATGACCTACACCAGGATTCCCCAGGTGCCCTGGACAACAGTG___GGCCTGTGCTTTAACGGCAGTGCCTTCGTCTT LKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLq|fwgcwygrlllelstsgsphlagscl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11810 MAPKAPK3::USP4 ENSG00000114738.11::ENSG00000114316.13 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAPKAPK3 ENSG00000114738.11 protein_coding + + chr3:50611520-50649291:+ chr3:50617784:+ chr3:50648951-50686722:+ chr3:50655215:+ USP4 ENSG00000114316.13 protein_coding - + chr3:49277144-49340712:- chr3:49335885:+ chr3:49314577-49378145:- chr3:49373318:+ chr3:50639325,chr3:50639324 chr3:49328219,chr3:49328215 NA NA chr3:50676756,chr3:50676755 chr3:49365652,chr3:49365648 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(10%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 3 7 2 465 14 ENST00000357955.6 unknown downstream upstream mismappers(1),mismatches(2) CGCCTCTCCTGCCCCTCGCCGGTACCTCAGCAAG___GTGCCACTAGAAGCGCCAGGCTGGGGCCGCCTCTGAGCGCCCCGCGGGGGCCATGGATGGTGAAACAG...GCGGCGGGAGCCCAAGAAGTACGCAGTGACCGACGACTACCAGTTGTCCAAGCAGGTGCTGGGCCTGGGTGTGAACGGCAAAGTGCTGGAGTGCTTCCATCGGCGCACTGGACAGAAGTGTGCCCTGAAG|ACGGAGTCTTGTTCTGTCGCCCAGGCTGGAGTATAGTGACACAATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGACTAACTGGGATTACAGGCACCTGTCACCACTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGG RREPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALK|tescsvaqagv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE MAP kinase-activated protein kinase 3 CAMK MAPKAPK MK2 Q16644 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11814 SLC13A3::RILPL2 ENSG00000158296.14::ENSG00000150977.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1168 FALSE NA FALSE NA SLC13A3 ENSG00000158296.14 protein_coding - - chr20:46557823-46684467:- chr20:46583572:- chr20:45186462-45313106:- chr20:45212211:- RILPL2 ENSG00000150977.11 protein_coding - - chr12:123415039-123436684:- chr12:123415921:- chr12:123899586-123921231:- chr12:123900468:- chr20:46581855,chr20:46581860 chr12:123416981,chr12:123416983 NA NA chr20:45210494,chr20:45210499 chr12:123901528,chr12:123901530 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Sodium:sulfate_symporter_transmembrane_region(70%)| CitMHS(39%),Na_sulph_symp(74%)|RILP(26%) 6 1 4 39 97 ENST00000290317.9 ENST00000280571.10 upstream downstream duplicates(1) CTCGAGCTGTAATTCGGGAAGAATACCAGAACCTGGGGCCCATCAA___GTTTGCCGAACAGGCTGTTTTCATCCTTTTCTGCATGTTTGCCATCCTCCTCTTCACCCGGGACCCGAAGTTCATCCCTGGCTGGGCCAGCCTCTTCAATCCTGG___GTTTCTTTCTGATGCTGTCACCGGCGTGGCTATTGTCACCATCTTGTTCTTCTTCCCGTCCCAAAGGCCCTCTCTCAAGTGGTGGTTTGACTTCAAAG|GTTCTTTTTTCGATCGGGGAAACAGACCTAGATCCAAGGC...TCTAGAAGACAACCTTCCAAGATGCCTGGCAAAACCACCTCCCTGTGCCACACAGACACACTAGGCCTGTGTATTTATTTCCCCTTCAAAGCAGACTGAGGAGGGAGGAGACGAGGTTCTCTTGGCATCACTTTCTCCCTGGCTGCAGAACTAGACACCCTTGAAGATTTGGCCTGGGCCAGTGAGACTGAAATCAAG...GTCTTCAATGGTTAGCAGAAGGGAGAAAAGAAAGCAGGAAAATGTGCTATTGAGATTCCAGTGGTGACTTCACTGATATTTAGTGAATATTTGATTTAGCC RAVIREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRPSLKWWFDFK|gsffdrgnrprsk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11815 GLIPR2::CBFA2T2 ENSG00000122694.16::ENSG00000078699.22 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GLIPR2 ENSG00000122694.16 protein_coding + + chr9:36136536-36163913:+ chr9:36150949:+ chr9:36136533-36163910:+ chr9:36150946:+ CBFA2T2 ENSG00000078699.22 protein_coding + - chr20:33490075-33650036:+ chr20:33552502:- chr20:32077881-32237842:+ chr20:32140308:- chr9:36153444,chr9:36153441,chr9:36153810 chr20:33557269,chr20:33557271,chr20:33557271 NA NA chr9:36153441,chr9:36153438,chr9:36153807 chr20:32145075,chr20:32145077,chr20:32145077 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Cysteine-rich_secretory_protein_family(75%)| CAP(55%)| 6 4 1 125 12 ENST00000377960.9 unknown downstream downstream duplicates(2),mismatches(1) CTTCCAAACAGTTTCATAATGAGGTCCTGAAGGCCCACAATGAGTACCGGCAGAAGCACGGCGTCCCCCCACTGAAGCTCTGCAAGAACCTCAACCG...CACGAGGATCCTCAAGCACAGCCCGGAGTCCAGCCGTGGCCAGTGTGGGGAGAACCTTGCATGGGCATCCTATGATCAGACAG___GAAAGGAGGTGGCTGATAGATGGTACAGTGAAATCAAGAACTATAACTTCCAGCAGCCTGGCTTCACCTCGGGGACTG|CAAACATTTCAAGAGACACTGgTTTCCCCTTACAATTCAGCAGAAAGAGCCTGGAGTAGCTGTTTCACTGATTCAATTACTAAGCCAATTATCTAAATCCCTAAAACTCTCATCTGTCAAAAATCAGAAGACAGGACCAGGTGTCACCTGAGGTCCTCTGAAGCTTTGTTTCTTTC TRILKHSPESSRGQCGENLAWASYDQTGKEVADRWYSEIKNYNFQQPGFTSGT|anisrdtgfplqfsrksle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11816 DOCK4::BMT2 ENSG00000128512.24::ENSG00000164603.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1169 FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111863372:- chr7:111366166-111846462:- chr7:111503428:- BMT2 ENSG00000164603.12 protein_coding - - chr7:112819147-112939875:- chr7:112832675:- chr7:112459202-112579930:- chr7:112472730:- chr7:111854375,chr7:111854380 chr7:112851254,chr7:112851256 NA NA chr7:111494431,chr7:111494436 chr7:112491309,chr7:112491311 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none C2_domain_in_Dock180_and_Zizimin_proteins(100%),DOCK_N-terminus(100%),Variant_SH3_domain(100%)|25S_rRNA_(adenine(2142)-N(1))-methyltransferase__Bmt2_(100%) DOCK-C2(100%),DOCK_N(100%),SH3_2(100%)|Bmt2(100%) 3 0 5 17 60 ENST00000437633.6 ENST00000297145.9 upstream downstream duplicates(1),low_entropy(1) CCGGATCACAGAAGCAGAGCGGCAAGAGCATATCCAGGAGGTGCTGAAG___GCACAAGAATACATTTTTAAGTATATAGTTCAATCTCGAAGGCTGTTTTCC...GGAGCTTCTCATGTCAGTCCGTTTCTTTCTTTCGCAAGAGAGCAAAGGGTCTGGAGCATTATCTCAGTCACAG___GCTGTGTTTCTGAGCTCTTTCCCTGCCGTGTACTCAGAACTGTTGAAGCTCTTTGATGTCCGGGAAGTAGCCAACTTGGTCCAGGACACCCTGGGCAGTCTGCCGACCATCCTGCATGTGGATGATTCCCTGCAGGCCATCAAACTGCAGTGCATTGGCAAAACCGTGGAAAGCCAGCTTTATACCAACCCAG|GTTGCTACAAGCCTCAGGAAAAATCAGATTACTTGATGTTGGCAGCTGCTTTAACCCATTTCTGAAGTTTGAAGAATTTCTAACTGTTGGCATAGATATTGTACCTGCTGTAGAG___AGTGTCTATAAATGTGATTTCCTGAACTTACAGCTTCAGCAACCACTCCAGCTTGCACAGGATGCTATAGATGCTTTTTTGAAGCAGCTGAAAAACC ELLMSVRFFLSQESKGSGALSQSQAVFLSSFPAVYSELLKLFDVREVANLVQDTLGSLPTILHVDDSLQAIKLQCIGKTVESQLYTNP|gcykpqeksdylmlaaalthf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11818 DYNC2H1::NADSYN1 ENSG00000187240.17::ENSG00000172890.13 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DYNC2H1 ENSG00000187240.17 protein_coding + + chr11:103109410-103479863:+ chr11:103358359:+ chr11:102980139-103350591:+ chr11:103229087:+ NADSYN1 ENSG00000172890.13 protein_coding + + chr11:71453109-71524107:+ chr11:71473569:+ chr11:71164155-71235153:+ chr11:71184615:+ chr11:103366889,chr11:103366889 chr11:71473387,chr11:71473384 NA NA chr11:103237617,chr11:103237617 chr11:71184433,chr11:71184430 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(6%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%)|Carbon-nitrogen_hydrolase(35%),NAD_synthase(100%) AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_11(100%),DHC_N1(100%),DHC_N2(100%),Dynein_C(5%),Dynein_heavy(100%),MT(100%)|CN_hydrolase(19%),NAD_synthase(100%) 1 1 4 82 110 ENST00000375735.7 ENST00000319023.7 downstream upstream duplicates(1),mismatches(1) GTCATTGAGAAAATTCCAGAGGACGACAAACCTAGTTTCTTTGGTCTGCCTGCCAATATCGCTCGCTCATCTCAGCGCATGATCAGTTCTCAG___GTTATTTCACAGTTGAGGATTTTGGGCAGATCCATAACAGCTGGTTCCAAATTTGATAGAGAAATCTGGTCTAATGAACTTTCTCCTGTCCTCAATCTCTGGAAGAAACTAAACCAG|CCCGCACATCGACATGGGCCTGGATGGCGTGGAGATCATCACCAACGCCTCGGGCAGCCACCAcGTGCTGCGCAAAGCCAtCAC...CGGCTGTGCCATGATcGCCATGAACGGAAGCGTCTTTGCTCAAGGATCCCAGTTTTCTCTGGATGACGTG___GAAGTCCTGACGGCCACGCTGGATCTGGAG...CTACAGGGCaaAGATTTCtcCTgGAAACCTGGCG___GCCAGCAGGGCGAGCCCCTACCCCAGAGTGAAGGTGGACTTTGCCCTCTCGTGCCACGAGGACTTGC VIEKIPEDDKPSFFGLPANIARSSQRMISSQVISQLRILGRSITAGSKFDREIWSNELSPVLNLWKKLNQ|pahrhgpgwrgdhhqrlgqppraaqsh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11820 ATF7::ITGA5 ENSG00000170653.19::ENSG00000161638.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2066 TRUE 799 ATF7 ENSG00000170653.19 protein_coding - - chr12:53507856-53626410:- chr12:53511255:- chr12:53901640-54020194:- chr12:53905039:- ITGA5 ENSG00000161638.11 protein_coding - - chr12:54395261-54419266:- chr12:54398698:- chr12:54789045-54813050:- chr12:54792482:- chr12:53510191,chr12:53510193 chr12:54398871,chr12:54398870 NA NA chr12:53903975,chr12:53903977 chr12:54792655,chr12:54792654 NA NA sense sense unknown intron CDS/splice-site duplication high none bZIP_transcription_factor(100%)| bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),zf-C2H2(100%)|Integrin_alpha(100%) 0 2 4 29 147 unknown ENST00000293379.9 upstream downstream duplicates(1) ATCACTTGAACCTGGGAGGCAGAGGTTGCAGTAAGCTAAGATCGTGCCGTTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAGCAG|CGGGAGCACCAGCCATTTAGCCTGCAGTGTGAGGCTGTGTACAAAGCCCTGAAGATGCCCTACCGAATCCTGCCTCGGCAGCTGCCCCAAAAAGAGCGTCAG___GTGGCCACAGCTGTGCAATGGACCAAGGCAGAAGGCAGCTATGGCGTCCCACTGTGGATCATCATCCTAGCCATCCTGTTTGGCCTCCTGCTCCTAGGTCTACTCATCTACA...ACCTCTGATGCCTGAGTCCTCCCAATTTCAGACTCCCATTCCTGAAGAACCAGTCCCCCCtCCCTCATTCTACTGAAAAGGAGGGGTCTGGGTACTTCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11821 ATF7::ITGA5 ENSG00000170653.19::ENSG00000161638.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2066 TRUE 799 ATF7 ENSG00000170653.19 protein_coding - - chr12:53507856-53626410:- chr12:53517015:- chr12:53901640-54020194:- chr12:53910799:- ITGA5 ENSG00000161638.11 protein_coding - - chr12:54395261-54419266:- chr12:54398698:- chr12:54789045-54813050:- chr12:54792482:- chr12:53510191,chr12:53510193 chr12:54398871,chr12:54398870 NA NA chr12:53903975,chr12:53903977 chr12:54792655,chr12:54792654 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none bZIP_transcription_factor(100%)| bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),zf-C2H2(100%)|Integrin_alpha(100%) 1 0 2 87 147 ENST00000548446.6 ENST00000293379.9 upstream downstream mismatches(1) GCAACAGCCCCTAGCAATGGCCTCAGTGTTCGCTCTGCAGCTGAAGCTGTGGCCACCTCGGTCCTCACTCAGATGGCCAGCCAAAGGACAGAACTGAGCAT...CCCGCCCAAGAGCCAAGAGAGATGTCATCTTATCCCCTCCCATCTGCCTTGGACATGGCAATATGGGTGGGGGGAATTGTGTGTT|CGGGAGCACCAGCCATTTAGCCTGCAGTGTGAGGCTGTGTACAAAGCCCTGAAGATGCCCTACCGAATCCTGCCTCGGCAGCTGCCCCAAAAAGAGCGTCAG___GTGGCCACAGCTGTGCAATGGACCAAGGCAGAAGGCgGCTATGGCGTCCCACTGTGGATCATCATCCTAGCCATCCTGTTTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11822 ATF7::ITGA5 ENSG00000170653.19::ENSG00000161638.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2066 TRUE 799 ATF7 ENSG00000170653.19 protein_coding - - chr12:53507856-53626410:- chr12:53523276:- chr12:53901640-54020194:- chr12:53917060:- ITGA5 ENSG00000161638.11 protein_coding - - chr12:54395261-54419266:- chr12:54398698:- chr12:54789045-54813050:- chr12:54792482:- chr12:53510191,chr12:53510193 chr12:54398871,chr12:54398870 NA NA chr12:53903975,chr12:53903977 chr12:54792655,chr12:54792654 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none bZIP_transcription_factor(100%)| bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),zf-C2H2(100%)|Integrin_alpha(100%) 1 0 1 98 147 ENST00000548446.6 ENST00000293379.9 upstream downstream duplicates(1) GAAGAACTCACTTCTCAGAACATTCAGCTGAGT___AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG|CGGGAGCACCAGCCATTTAGCCTGCAGTGTGAGGCTGTGTACAAAGCCCTGAAGATGCCCTACCGAATCCTGCCTCGGCAGCTG EELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYL|agapai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11823 ATF7-NPFF::ITGA5 ENSG00000267281.3::ENSG00000161638.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2067 TRUE 800 ATF7-NPFF ENSG00000267281.3 protein_coding - - chr12:53506691-53625979:- chr12:53511255:- chr12:53900475-54019763:- chr12:53905039:- ITGA5 ENSG00000161638.11 protein_coding - - chr12:54395261-54419266:- chr12:54398698:- chr12:54789045-54813050:- chr12:54792482:- chr12:53510191,chr12:53510193 chr12:54398871,chr12:54398870 NA NA chr12:53903975,chr12:53903977 chr12:54792655,chr12:54792654 NA NA sense sense unknown intron CDS/splice-site duplication high none bZIP_transcription_factor(100%)| bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),zf-C2H2(100%)|Integrin_alpha(100%) 0 2 3 29 147 unknown ENST00000293379.9 upstream downstream duplicates(1) ATCACTTGAACCTGGGAGGCAGAGGTTGCAGTAAGCTAAGATCGTGCCGTTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAAGCAG|CGGGAGCACCAGCCATTTAGCCTGCAGTGTGAGGCTGTGTACAAAGCCCTGAAGATGCCCTACCGAATCCTGCCTCGGCAGCTGCCCCAAAAAGAGCGTCAG___GTGGCCACAGCTGTGCAATGGACCAAGGCAGAAGGCAGCTATGGCGTCCCACTGTGGATCATCATCCTAGCCATCCTGTTTGGCCTCCTGCTCCTAGGTCTACTCATCTACA...ACCTCTGATGCCTGAGTCCTCCCAATTTCAGACTCCCATTCCTGAAGAACCAGTCCCCCCtCCCTCATTCTACTGAAAAGGAGGGGTCTGGGTACTTCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11824 ATF7-NPFF::ITGA5 ENSG00000267281.3::ENSG00000161638.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2067 TRUE 800 ATF7-NPFF ENSG00000267281.3 protein_coding - - chr12:53506691-53625979:- chr12:53523276:- chr12:53900475-54019763:- chr12:53917060:- ITGA5 ENSG00000161638.11 protein_coding - - chr12:54395261-54419266:- chr12:54398698:- chr12:54789045-54813050:- chr12:54792482:- chr12:53510191,chr12:53510193 chr12:54398871,chr12:54398870 NA NA chr12:53903975,chr12:53903977 chr12:54792655,chr12:54792654 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none bZIP_transcription_factor(100%)| bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%),zf-C2H2(100%)|Integrin_alpha(100%) 1 0 1 98 147 ENST00000591834.1 ENST00000293379.9 upstream downstream duplicates(1) GAAGAACTCACTTCTCAGAACATTCAGCTGAGT___AATGAAGTCACATTACTACGCAATGAGGTGGCCCAGTTGAAACAGCTACTGTTAGCTCATAAAGACTGCCCAGTCACTGCACTACAGAAAAAGACTCAAGGCTATTTAG|CGGGAGCACCAGCCATTTAGCCTGCAGTGTGAGGCTGTGTACAAAGCCCTGAAGATGCCCTACCGAATCCTGCCTCGGCAGCTG EELTSQNIQLSNEVTLLRNEVAQLKQLLLAHKDCPVTALQKKTQGYL|agapai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11832 DTNB::HADHA ENSG00000138101.20::ENSG00000084754.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE TRUE 1171 TRUE 2069 TRUE 801 DTNB ENSG00000138101.20 protein_coding - - chr2:25377198-25673647:- chr2:25531473:- chr2:25600067-25896516:- chr2:25754342:- HADHA ENSG00000084754.12 protein_coding - - chr2:26190635-26244672:- chr2:26204196:- chr2:26413504-26467540:- chr2:26427065:- chr2:25514944,chr2:25514946,chr2:25514979 chr2:26210147,chr2:26210146,chr2:26210639 NA NA chr2:25737813,chr2:25737815,chr2:25737848 chr2:26433016,chr2:26433015,chr2:26433508 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none EF-hand(100%),EF_hand(100%),Zinc_finger__ZZ_type(100%)|3-hydroxyacyl-CoA_dehydrogenase__C-terminal_domain(100%),3-hydroxyacyl-CoA_dehydrogenase__NAD_binding_domain(100%) EF-hand_2(100%),EF-hand_3(100%),ZZ(100%)|3HCDH(100%),3HCDH_N(100%) 4 3 4 146 1235 ENST00000288642.12 ENST00000644428.1 upstream downstream duplicates(1) CTGTTTTCCACAGCAG___AGAAAGATAATGCTAAATATGTTTTTAGACACAATGATGGCTGACCCTCCTCCCCAGTGCCTTGTCTGGCTACCTCTCATGCACA...CCTACTGCCGATGTGAGAGTATGATGGGTTTCCGGTACCGATGCCAGCAGTGCCACAACTATCAGCTCTGCCAGAATTGCTTTTGGCGTGGCCATGCCGGCGGCCCTCACAGCAACCAGCACCAGATGAAGGAGCATTCCTCTTGG___AAATCTCCTGCAAAGAAGCTGAGCCATGCAATTAGTAAATCTTTGGGGTGTGTACCCACGAGAGAACCCCCGCATCCTGTTTTTCCTGAGCAACCAGAGAAACCACTTGACCTTGCACATATAGT|GCATCTGGCTATTCTTGGTGCAGGGCTGATGGGAGCAGGCATCGCCCAAGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAGGACAGCAACAAGTGTTCAAAGG___ATTGAATGACAAAGTGAAGAAG...CGTGGACAAGATGCAGCTGCTGGAGATTATCACGACCGAGAAAACTTCCAAAGACACCAGTGCTTCAGCTGTAGCAGTTGGTCTCAAGCAGGGGAAGG YCRCESMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQMKEHSSWKSPAKKLSHAISKSLGCVPTREPPHPVFPEQPEKPLDLAHIv|HLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11833 DTNB::HADHA ENSG00000138101.20::ENSG00000084754.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2069 TRUE 801 DTNB ENSG00000138101.20 protein_coding - - chr2:25377198-25673647:- chr2:25531473:- chr2:25600067-25896516:- chr2:25754342:- HADHA ENSG00000084754.12 protein_coding - - chr2:26190635-26244672:- chr2:26209889:- chr2:26413504-26467540:- chr2:26432758:- chr2:25514944,chr2:25514946,chr2:25514979 chr2:26210147,chr2:26210146,chr2:26210639 NA NA chr2:25737813,chr2:25737815,chr2:25737848 chr2:26433016,chr2:26433015,chr2:26433508 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none EF-hand(100%),EF_hand(100%),Zinc_finger__ZZ_type(100%)|3-hydroxyacyl-CoA_dehydrogenase__C-terminal_domain(100%),3-hydroxyacyl-CoA_dehydrogenase__NAD_binding_domain(100%) EF-hand_2(100%),EF-hand_3(100%),ZZ(100%)|3HCDH(100%),3HCDH_N(100%) 0 1 5 146 1307 ENST00000288642.12 ENST00000644428.1 upstream downstream duplicates(2) CTCTGCCAGAATTGCTTTTGGCGTGGCCATGCCGGCGGCCCTCACAGCAACCAGCACCAGATGAAGGAGCATTCCTCTTGG___AAATCTCCTGCAAAGAAGCTGAGCCATGCAATTAGTAAATCTTTGGGGTGTGTACCCACGAGAGAACCCCCGCATCCTGTTTTTCCTGAGCAACCAGAGAAACCACTTGACCTTGCACATATAGT|AAATTTGGAGAGCTTGTAATGACCAAAGAATCAAAGGCCTTGATGGGACTCTACCATGGTCAGGTCCTGTGCAAGAAGAATAAATTTGGAGCTCCACAGAAGGATGTTAA___GCATCTG...TCTTGGTGCAGGGCTGATGGGAGCAGGCATCGCCCAAGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAG LCQNCFWRGHAGGPHSNQHQMKEHSSWKSPAKKLSHAISKSLGCVPTREPPHPVFPEQPEKPLDLAHIv|nlesl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11834 SMYD3::KIF26B ENSG00000185420.19::ENSG00000162849.16 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245858492:- chr1:245912644-246670614:- chr1:246021794:- KIF26B ENSG00000162849.16 protein_coding + - chr1:245154985-245709432:+ chr1:245411493:- chr1:245318287-245872734:+ chr1:245574795:- chr1:245797712,chr1:245797718 chr1:245485182,chr1:245485181 NA NA chr1:245961014,chr1:245961020 chr1:245648484,chr1:245648483 NA NA sense antisense unknown intron intron deletion/5'-5' medium none MYND_finger(100%),SET_domain(100%)| SET(100%),zf-MYND(100%)| 4 2 2 89 11 ENST00000488153.5 unknown upstream downstream duplicates(2) CGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAG___TATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTC...CTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGA___AGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGCA|g|AGAAACAGATGAAATGACTCACTGAGGAGGGAAGCACTGGGATGCCTCCTAACCcGGGACGGCTTCCTCTTCTGCAGCGTCcGTGTTTGTCAGTGTCTCCTCTGGATCAGGCAGGCCTCAGACCTCACTAAGC...ATCAGGCAAACTTGTTGATCCATTTAGACTTCACTCTCACCCTGCTTGTCTCTTTTCTTCGCGCACACCAGAGCTACCCAGAACCGCGGTGATGCCTTTC...GAAGAGGGCAAAAGCTGGCATCAGCAAGACATGTTTTGGTTTAGACGTCTCAGTAGACATTGCAGCAAGTTAACTATTGCTGGGTTCTTGTTTGAATAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11840 MLKL::KARS1 ENSG00000168404.13::ENSG00000065427.15 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2070 FALSE NA MLKL ENSG00000168404.13 protein_coding - - chr16:74671855-74700960:- chr16:74700453:- chr16:74705753-74734858:- chr16:74734351:- KARS1 ENSG00000065427.15 protein_coding - - chr16:75627474-75648643:- chr16:75641723:- chr16:75661372-75682541:- chr16:75675621:- chr16:74698237,chr16:74698240 chr16:75647684,chr16:75647684 NA NA chr16:74732135,chr16:74732138 chr16:75681582,chr16:75681582 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |OB-fold_nucleic_acid_binding_domain(100%),tRNA_synthetases_class_II_(D__K_and_N)_(100%) |tRNA-synt_2(100%),tRNA_anti-codon(100%) 0 1 0 6 1538 ENST00000308807.12 ENST00000319410.9 upstream downstream none GCACGGGACAGATTGGACGCACACCCCTCGGGAGGCGCGAAG|TGAGCTGAAGAGACGCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCAAACAGAAAGAGCTCAGTGAGAAACAGCTAAGCCAAGCCACTGCTGCTGCCACCAACCACACCACTGATAATGGTGTGGGTCCTGAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Mixed lineage kinase domain-like protein TKL TKL-Unique Q8NB16 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11847 FGD4::DNM1L ENSG00000139132.16::ENSG00000087470.21 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FGD4 ENSG00000139132.16 protein_coding + + chr12:32399558-32646050:+ chr12:32602317:+ chr12:32552492-32798984:+ chr12:32755251:+ DNM1L ENSG00000087470.21 protein_coding + + chr12:32679200-32745650:+ chr12:32731014:+ chr12:32832134-32898584:+ chr12:32883948:+ chr12:32603685,chr12:32603832,chr12:32603828 chr12:32729761,chr12:32729741,chr12:32729734 NA NA chr12:32756619,chr12:32756766,chr12:32756762 chr12:32882695,chr12:32882675,chr12:32882668 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none RhoGEF_domain(67%)|Dynamin_GTPase_effector_domain(100%),Dynamin_central_region(52%) RhoGEF(30%)|Dynamin_M(18%),GED(100%) 3 1 0 21 268 ENST00000534526.7 ENST00000452533.6 downstream upstream mismatches(2) CACAACAGACAGCTGTGATGGAAATGCTTCTGACAGTAGCTACAGGACTCCAGGCATAGGCCCAGTGCTCCCCCTAGAAGAAAGAGGGGCAGAAACAGAAA...AAACGAATGCAAGAATG___GGAAACTACTCCTAGAATTGGAGACATCCTTCAGAAATTGGCACCATTCCTTAAGATGTATGGAGAATATGTGAAAGGATTTGATAATGCAATGGAATTGGTTAAAAACATGACAGAACGTATTCCCCAGTTCAAATCAGTGGTTGAAGAAATTCAG|ATGCGGTGGTGCTAGAATTTGTTATATTTTCCATGAGACTTTTGGGCGAACCTTAGAATCTGTTGATCCACTTGGTG...GAGGTTTCATTTGAGTTACTGGTGAAGCGGCAAATCAAACGTCTAGAAGAGCCCAGCCTCCGCTGTGTGGAACTGGTTCATGAGGA?????????G?TCAT KRMQEWETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQ|mrwc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11866 CDC37::ENSG00000285188 ENSG00000105401.9::ENSG00000285188.1 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2077 TRUE 802 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395022:- chr19:10501809-10530797:- chr19:10505698:- ENSG00000285188 ENSG00000285188.1 protein_coding - - chr19:18207961-18255419:- chr19:18237059:- chr19:18318771-18366229:- chr19:18347869:- chr19:10394251,chr19:10394258 chr19:18239666,chr19:18239670 NA NA chr19:10504927,chr19:10504934 chr19:18350476,chr19:18350480 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) CDC37_M(19%),CDC37_N(100%)|PDE4_UCR(100%),PDEase_I(100%) 40 46 101 3394 187 ENST00000593124.1 ENST00000355502.7 upstream downstream duplicates(30),low_entropy(2),mismatches(11) GCCAAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCACCAGACAATCGTCATGCAATTTATCCTGGAGCTGGCCAAGAGCCTAAAGGTGGACCCCCGGGCCTGCTTCCGGCAGTTCTTCACTAAGATTAA|GTTCTGGGAGTTGGTGGATTCTGGCTTGGCCCCTGTGAGCCCCCTTGGTGGTGGTATCATCCGGAGAGGCTTCTCGGGTACCCCATTGCTGCCATCGCTGCCGAGCCGCCTTGTGTTGCCTGGAGAGGTCGAGCCCAGTACCCATGTGGTGTTCACCATTGAGGCTTAAGGGACAGAGAAAAGACAGCGTGGTCCCAGATAG___CACCATCTGGGCATCGACAGCTCCTCGGTGTCGGCCCCACCTTGAGCCCCAGTTCCACC QKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIk|fwelvdsglapvsplgggiirrgfsgtpllpslpsrlvlpgevepsthvvftiea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11867 CDC37::ENSG00000285188 ENSG00000105401.9::ENSG00000285188.1 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2077 TRUE 802 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- ENSG00000285188 ENSG00000285188.1 protein_coding - - chr19:18207961-18255419:- chr19:18233400:- chr19:18318771-18366229:- chr19:18344210:- chr19:10394251,chr19:10394258 chr19:18239666,chr19:18239670 NA NA chr19:10504927,chr19:10504934 chr19:18350476,chr19:18350480 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) CDC37_M(20%),CDC37_N(100%)|PDE4_UCR(100%),PDEase_I(100%) 4 8 11 3394 251 ENST00000593124.1 ENST00000355502.7 upstream downstream duplicates(6),mismatches(1) AAGGAGAAGAGCATGCCCTGGAACGTGGACACGCTCAGCAAAGACGGCTTCAGCAAG___AGCATGGTAAATACCAAGCCCGAGAAGACGGAGGAGGACTCAGA...AAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCACCAGACAATCGTCATGCAATTTATCCTGGAGCTGGCCAAGAGCCTAAAGGTGGACCCCCGGGCCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|CACCATCTGGGCATCGACAGCTCCTCGGTGTCGGCCCCACCTTGAGCCCCAGTTCCACCTTCTACCGCTTCAGCACCTCCGGCGCGGACAGCTCCTCGCTGTCGCCTCCACTCCCGGCCCTGGGCCGGACCCGGGAGCAGACGCTCCTCGGCGCCCGCTCACGGGGACGAGTCCTGCTCCCTGCTATCCCAGACCCCTTTCTCTGGCGCATGGAGAACCTGGGGGTCGGCGAAGGGGCAGAGGCTTGCAGCAGGTTGAGTCGCTCTCGCGGCCGCCACAGCATGACCAGAGCCCCGAAGCACCTGTGGCGGCAACCCCGGCGCCCCATCCGCATCCAA KYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIK|hhlgidsssvsapp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11868 CDC37::ENSG00000285188 ENSG00000105401.9::ENSG00000285188.1 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2077 TRUE 802 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- ENSG00000285188 ENSG00000285188.1 protein_coding - - chr19:18207961-18255419:- chr19:18211941:- chr19:18318771-18366229:- chr19:18322751:- chr19:10394251,chr19:10394258 chr19:18239666,chr19:18239670 NA NA chr19:10504927,chr19:10504934 chr19:18350476,chr19:18350480 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|3'5'-cyclic_nucleotide_phosphodiesterase(38%) CDC37_M(20%),CDC37_N(100%)|PDEase_I(10%) 1 0 0 3394 390 ENST00000593124.1 ENST00000355502.7 upstream downstream none AACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCA...CCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|GTCTTGCAGAcCCTGGTGCACTGTGCTGATCTGAGCAcCCCCACCAAGCCGCTGCCCCTGTACCGCCAG CFRQFFTKIK|VLQtLVHCADLStPTKPLPLYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11871 SIRT6::TARM1 ENSG00000077463.15::ENSG00000248385.8 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1172 TRUE 2079 TRUE 803 SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4182474:- chr19:4174106-4182563:- chr19:4182471:- TARM1 ENSG00000248385.8 protein_coding - - chr19:54069895-54081365:- chr19:54075918:- chr19:54573149-54584634:- chr19:54579170:- chr19:4181759,chr19:4181974,chr19:4181976 chr19:54080776,chr19:54080816,chr19:54080815 NA NA chr19:4181756,chr19:4181971,chr19:4181973 chr19:54584045,chr19:54584085,chr19:54584084 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Immunoglobulin_domain(100%) |Ig_2(100%),ig(100%) 0 40 7 243 110 ENST00000600938.5 ENST00000432826.2 upstream downstream duplicates(9),mismatches(1) GGAAACTTTATTGTTCCCGTGGGGCAGTCGAGGATGTCGGTGAATTACGCGGCGGGGCTGTCGCCGTACGCGGACAAGGGCAAGTGCGGCCTCCCGGAG|GACTGTGCGTGGGCCAAGGAGACACAAGGGGAGATG___GGTCACTGCCCAAGCCGTCCCTCAGTGCCTGGCCCAGCTCGGTGGTCCCTGCCAACAGCAATGTGACGCTGCGATGTTGGACTCCTGCCAGAGGTGTGAGCTTTGTTCTCAGGAAGGGAGGAATTATTCTGGAGTCCCCGAAGCCCCTTGATTCTACAGAGGGCGCGGCCGAATTTCACCTCAATAATCTAAAAGTCAGAAATGCTGGAGAGTACACCTGTGAATACTACAGAAAAGCATCCCCCCACATCCTTTCACAGCgCAGTGACGTCCTTCTACTGTTGGTGACAG___GACATTTATCTAAACCTTTCCTCCGAACCTACCA MSVNYAAGLSPYADKGKCGLPE|dcawaketqgemghcpsrpsvpgparwslptam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11872 SIRT6::TARM1 ENSG00000077463.15::ENSG00000248385.8 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1173 TRUE 2079 TRUE 803 SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4182474:- chr19:4174106-4182563:- chr19:4182471:- TARM1 ENSG00000248385.8 protein_coding - - chr19:54069895-54081365:- chr19:54075114:- chr19:54573149-54584634:- chr19:54578366:- chr19:4181759,chr19:4181974,chr19:4181976 chr19:54080776,chr19:54080816,chr19:54080815 NA NA chr19:4181756,chr19:4181971,chr19:4181973 chr19:54584045,chr19:54584085,chr19:54584084 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Immunoglobulin_domain(100%) |Ig_2(100%),ig(100%) 0 14 4 243 130 ENST00000600938.5 ENST00000432826.2 upstream downstream duplicates(5),mismatches(4) GCGGCCTCAACAAGGGAAACTTTATTGTTCCCGTGGGGCAGTCGAGGATGTCGGTGAATTACGCGGCGGGGCTGTCGCCGTACGCGGACAAGGGCAAGTGCGGCCTCCCGGAG|GGTCACTGCCCAAGCCGTCCCTCAGTGCCTGGCCCAGCTCGGTGGTCCCTGCCAACAGCAATGTGACGCTGCGATGTTGGACTCCTGCCAGAGGTGTGAGCTTTGTTCTCAGGAAGGGAGGAATTATTCTGGAGTCCCCGAAGCCCCTTGATTCTACAGAGGGCGCGGCCGAATTTCACCTCAATAATCTAAAAGTCAGAAATGCTGGAGAGTACACCTGTGAATACTACAGAAAAGCATCCCCCCACATCCTTTCACAGCgCAGTGACGTCCTTCTACTGTTGGTGACAG___GACATTTATCTAAACCTTTCCTCCGAACC MSVNYAAGLSPYADKGKCGLPE|ghcpsrpsvpgparwslptam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11873 SIRT6::TARM1 ENSG00000077463.15::ENSG00000248385.8 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2079 TRUE 803 SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4182474:- chr19:4174106-4182563:- chr19:4182471:- TARM1 ENSG00000248385.8 protein_coding - - chr19:54069895-54081365:- chr19:54074216:- chr19:54573149-54584634:- chr19:54577468:- chr19:4181759,chr19:4181974,chr19:4181976 chr19:54080776,chr19:54080816,chr19:54080815 NA NA chr19:4181756,chr19:4181971,chr19:4181973 chr19:54584045,chr19:54584085,chr19:54584084 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none none 0 2 0 243 186 ENST00000600938.5 ENST00000432826.2 upstream downstream duplicates(1) GGTGAATTACGCGGCGGGGCTGTCGCCGTACGCGGACAAGGGCAAGTGCGGCCTCCCGGAG|GACATTTATCTAAACCTTTCCTCCGAACCTACCAAAGGGGTACAGTGACCGCAGGTGGAAGGGTGACT...CGCTCTACTGAAGGCAGGGACGCCATCACCCATCCAGCTGCAGAGTCCAGCGGGGAAGGAGATAGACTTCTCTCTGGTGGACGTGACAGCCGGCGATGCTGGGA VNYAAGLSPYADKGKCGLPE|diylnlsseptkgvq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11876 AKAP8::BRD4 ENSG00000105127.10::ENSG00000141867.19 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AKAP8 ENSG00000105127.10 protein_coding - - chr19:15353385-15379815:- chr19:15368235:- chr19:15464196-15490626:- chr19:15479046:- BRD4 ENSG00000141867.19 protein_coding - - chr19:15235519-15332545:- chr19:15273133:- chr19:15346330-15443356:- chr19:15383944:- chr19:15363388 chr19:15310918 NA NA chr19:15474199 chr19:15421729 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Bromodomain(100%),Bromodomain_extra-terminal_-_transcription_regulation(100%),C-terminal_domain_of_bromodomain_protein_4(100%) |BET(100%),BRD4_CDT(100%),Bromodomain(100%) 12 16 12 451 242 ENST00000269701.7 ENST00000679869.1 upstream downstream duplicates(8),mismatches(3) GGCCCGGGTTGACAGTGAAGGAGATTTCTCCGAAAATG___ATGACGCAGCTGGTGACTTCCGCTCAGGAGATGAAGAATTCAAGGGT___GAGGATGAACTCTGCGACTCTGGGAGGCAAAGAG___GAGAGAAGGAGGACGAGGACGAGGATGTGAAGAAGAGAAGGGAAAAGCAAAGGAGAAGAGACAGGACGCGGGACCGTGCAGCCGACAG|AGTGCCTGGTGAAGAATGTGATGGGATCACTAGCATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCAAATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGACCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTATGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCT___GATTACTATAAGATCATTAAAACG ARVDSEGDFSENDDAAGDFRSGDEEFKGEDELCDSGRQRGEKEDEDEDVKKRREKQRRRDRTRDRAADr|vpgeecdgitsMSAESGPGTRLRNLPVMGDGLETSQMSTTQAQAQPQPANAASTNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE BRD4 protein Atypical BRD O60885 TRUE Skeleton no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bromodomain containing 4 1 Yes lethal midline carcinoma of young people epithelial oncogene, fusion translocation 11877 ZNF699::SIRT6 ENSG00000196110.8::ENSG00000077463.15 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1175 TRUE 2081 TRUE 804 ZNF699 ENSG00000196110.8 protein_coding - - chr19:9291140-9309838:- chr19:9305072:- chr19:9401816-9420514:- chr19:9415748:- SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4180909:- chr19:4174106-4182563:- chr19:4180906:- chr19:9304824,chr19:9304826,chr19:9304826 chr19:4181961,chr19:4181959,chr19:4181961 NA NA chr19:9415500,chr19:9415502,chr19:9415502 chr19:4181958,chr19:4181956,chr19:4181958 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Sir2_family(100%) |SIR2(100%) 7 6 11 38 224 ENST00000591998.6 ENST00000337491.7 upstream downstream duplicates(5),mismatches(1) CGGCGGTCTAAGGGCTGCCTCCCCGCCACTCCTTGTCCGGACCCCGCGCCCGGGGCCTCCCGCCGCCGCGGCGCCTCCTCAGAGAGCCCGGGTCAGCTGCCCCTGTGGCCGCGGCTGGTCCCAAACTCACTGAATCGGGAACTCTGGTCTGGGTACAGAAATCGGGGTGATTCTGATGCAGGCGAGAGTTGGAGAACCAATGTCGTAGTTCATCAGCCTCCGAAAGCATCCTTTGCTCTCTTTCCAGAAAGGAAGAGCATCTCTGCCATTCGTGTCTCAAGGACAAGCGCTTCAGCCTCGTTCTCTGTGAGCTGATCTGTGGATCGCGGCGTGTCGG___GCGACATGGAGGAAGAAAGAAAAACTGCTGAGTTACAGAAAAATAGAATACAG|ATCTTCGACCCCCCGGAGGAGCTGGAGCGGAAGGTGTGGGAACTGGCGAGGCTGGTCTGGCAGTCTTCCAaTGTGGTGTTCCACACGGGTGCCGGCATCAGCACTGCCTCTGGC...___GGGTCCCCACGGAGTCTGGACCATGGAGGAGCGAGGTCTGGCCCCCAAGTTCGACACCACCTTTGAGAGCGCGCGGCCCACGCAGACCCACATGGC...AGCTGGAGCGCGTGGGCCTCCTCCGCTTCCTGGTCAGCCAGAACGTGGACGGGCTCCATGTGCGCTCAGGCTTCCCCAG___GGACAAACTGGCAGAGCTCCACGGGAACATGTTTGTGGAAGAATGTGCCAAGTGTAAGAC___GCAGTACGTCCGAGACACAGTCGT MEEERKTAELQKNRIQ|IFDPPEELERKVWELARLVWQSSnVVFHTGAGISTAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11878 ZNF699::SIRT6 ENSG00000196110.8::ENSG00000077463.15 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2081 TRUE 804 ZNF699 ENSG00000196110.8 protein_coding - - chr19:9291140-9309838:- chr19:9305072:- chr19:9401816-9420514:- chr19:9415748:- SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4179286:- chr19:4174106-4182563:- chr19:4179283:- chr19:9304824,chr19:9304826,chr19:9304826 chr19:4181961,chr19:4181959,chr19:4181961 NA NA chr19:9415500,chr19:9415502,chr19:9415502 chr19:4181958,chr19:4181956,chr19:4181958 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Sir2_family(91%) |SIR2(71%) 1 1 5 38 272 ENST00000591998.6 ENST00000600938.5 upstream downstream none TGCCATTCGTGTCTCAAGGACAAGCGCTTCAGCCTCGTTCTCTGTGAGCTGATCTGTGGATCGCGGCGTGTCGG___GCGACATGGAGGAAGAAAGAAAAACTGCTGAGTTACAGAAAAATAGAATACAG|GGGTCCCCACGGAGTCTGGACCATGGAGGAGCGAGGTCTGGCCCCCAAGTTCGACACCACCTTTGAGAGCGCGCGGCCCACGCAGACCCACATGGCGCTGGTGCAGCTGGAGCGCGTGGGCCTCCTCCGCTTCCTGGTCAGCCAGAACGTGGACGGGCTCCATGTGCGCTCAGGCTTCCCCAG___GGACAAACTGGCAGAGCTCCACGG MEEERKTAELQKNRIQ|GSPRSLDHGGARSGPQVRHHL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11885 ENSG00000286104::SLC27A5 ENSG00000286104.1::ENSG00000083807.10 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286104 ENSG00000286104.1 lncRNA + + chr19:58575445-58601316:+ chr19:58583172:+ chr19:59086812-59112683:+ chr19:59094539:+ SLC27A5 ENSG00000083807.10 protein_coding - + chr19:58479512-58512413:- chr19:58509784:+ chr19:58990879-59023780:- chr19:59021151:+ chr19:58583615,chr19:58583614 chr19:58506908,chr19:58506904 NA NA chr19:59094982,chr19:59094981 chr19:59018275,chr19:59018271 NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 1 5 11 200 18 ENST00000652551.1 unknown downstream upstream duplicates(1),mismatches(1) TCTTCCTGGAGCCTATTCCCACTGCACTGAGCATTCCGTGTGTCCAGAGGTAGGGTTAGCAGGGATAGATGGACTTCCTGCTTATTTTCTGTTCACATTTCCACTGACCTTCAATCCTGTAGACTGCAAAGATTGAGCCAGCTGAGCCCCCAAAGAGACTCAGCAGTGCAGAATGTGGGCCTGAGTGGGAGGACTGCCCAGCCGCcCACCTTCCAGCTCTGTTCTTCCCGGGCCCTGGATGCTTCTTGCCACGCTGTCCTCTGAAATGACGCTCTGCCCCAGCAGACCTGTG|CCCCACGCCGACACTTACTCCCGTGGTCCTGTAGACTGGAGGGATCCTCAGAAGTGGGCTTACCGAGATCTAAGCAGCCGAGGATCCCAACGACAAGTCCCATCACGTGGTACAGAGGCAGGACCGTGTAAACCACATCATCAGCTGTGGCCCCAGATAAGGACAGCATCTTGCTCATCTGCAGTACCCGCTCATGCGTGAGGATGGCTGGCTTCGGGAGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11888 PAK4::SHB ENSG00000130669.17::ENSG00000107338.10 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAK4 ENSG00000130669.17 protein_coding + + chr19:39125770-39182816:+ chr19:39125919:+ chr19:39616410-39673456:+ chr19:39616559:+ SHB ENSG00000107338.10 protein_coding - + chr9:37915898-38069227:- chr9:37977702:+ chr9:37915895-38069224:- chr9:37977699:+ chr19:39127793,chr19:39127792 chr9:37969277,chr9:37969271 NA NA chr19:39618433,chr19:39618432 chr9:37969274,chr9:37969268 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 0 3 10 312 15 ENST00000360442.8 unknown downstream upstream duplicates(4),mismatches(1) GGGGATTCAACATGGCGGCGGGAGTGTCCGCGGTGGTGGCGGTGCAAGAGAGCTGAGGGAGGCGCGAGGGCGCGGAGTTCCAGGTCGAGCAGTTAGGCCGCGAGCGACTGCGGCGCCGAGCCG|GGTCCTCATCACCTGTATTCGTCTTCCTCCGTTCTGAGGAGTGAAGTCTAGCCTCCTGTCTGCAGAATTCTGGGGGCTGAGGATACGGCAGCTGAGAAGGCACTGACCTGGGAAAACCACCTTCCTCTTCACCCTCCTTCACAAAAGCAGGACCAGCAACCACTCCCATGTACACAGTTGATGAAGTACTTTTCATGCAATTCACCATTTAATCTAAAGGAACCACAAACAATTCACAGATGTACTTCCCGTCGGGCCCCTGATAATCAGGAGTGCTTTTGCTCACTCTCAtGCCAAAGAGATACTCAGTGAATGTGGTGGGATAAATGAAACAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 4 STE STE20 PAKB O96013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11889 PAK4::ENSG00000255872 ENSG00000130669.17::ENSG00000255872.3 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAK4 ENSG00000130669.17 protein_coding + + chr19:39125770-39182816:+ chr19:39125919:+ chr19:39616410-39673456:+ chr19:39616559:+ ENSG00000255872 ENSG00000255872.3 protein_coding - + chr9:37588413-38068687:- chr9:37977702:+ chr9:37588410-38068684:- chr9:37977699:+ chr19:39127793,chr19:39127792 chr9:37969277,chr9:37969271 NA NA chr19:39618433,chr19:39618432 chr9:37969274,chr9:37969268 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 0 3 10 312 15 ENST00000360442.8 unknown downstream upstream duplicates(4),mismatches(1) GGGGATTCAACATGGCGGCGGGAGTGTCCGCGGTGGTGGCGGTGCAAGAGAGCTGAGGGAGGCGCGAGGGCGCGGAGTTCCAGGTCGAGCAGTTAGGCCGCGAGCGACTGCGGCGCCGAGCCG|GGTCCTCATCACCTGTATTCGTCTTCCTCCGTTCTGAGGAGTGAAGTCTAGCCTCCTGTCTGCAGAATTCTGGGGGCTGAGGATACGGCAGCTGAGAAGGCACTGACCTGGGAAAACCACCTTCCTCTTCACCCTCCTTCACAAAAGCAGGACCAGCAACCACTCCCATGTACACAGTTGATGAAGTACTTTTCATGCAATTCACCATTTAATCTAAAGGAACCACAAACAATTCACAGATGTACTTCCCGTCGGGCCCCTGATAATCAGGAGTGCTTTTGCTCACTCTCAtGCCAAAGAGATACTCAGTGAATGTGGTGGGATAAATGAAACAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 4 STE STE20 PAKB O96013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11899 CDC37::PDE4C ENSG00000105401.9::ENSG00000105650.23 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2084 TRUE 805 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- PDE4C ENSG00000105650.23 protein_coding - - chr19:18207965-18248200:- chr19:18233400:- chr19:18318775-18359010:- chr19:18344210:- chr19:10394251,chr19:10394258 chr19:18239666,chr19:18239670 NA NA chr19:10504927,chr19:10504934 chr19:18350476,chr19:18350480 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) CDC37_M(20%),CDC37_N(100%)|PDE4_UCR(100%),PDEase_I(100%) 4 8 11 3394 251 ENST00000593124.1 ENST00000594617.7 upstream downstream duplicates(6),mismatches(1) AAGGAGAAGAGCATGCCCTGGAACGTGGACACGCTCAGCAAAGACGGCTTCAGCAAG___AGCATGGTAAATACCAAGCCCGAGAAGACGGAGGAGGACTCAGA...AAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCACCAGACAATCGTCATGCAATTTATCCTGGAGCTGGCCAAGAGCCTAAAGGTGGACCCCCGGGCCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|CACCATCTGGGCATCGACAGCTCCTCGGTGTCGGCCCCACCTTGAGCCCCAGTTCCACCTTCTACCGCTTCAGCACCTCCGGCGCGGACAGCTCCTCGCTGTCGCCTCCACTCCCGGCCCTGGGCCGGACCCGGGAGCAGACGCTCCTCGGCGCCCGCTCACGGGGACGAGTCCTGCTCCCTGCTATCCCAGACCCCTTTCTCTGGCGCATGGAGAACCTGGGGGTCGGCGAAGGGGCAGAGGCTTGCAGCAGGTTGAGTCGCTCTCGCGGCCGCCACAGCATGACCAGAGCCCCGAAGCACCTGTGGCGGCAACCCCGGCGCCCCATCCGCATCCAA KYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIK|hhlgidsssvsapp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11900 CDC37::PDE4C ENSG00000105401.9::ENSG00000105650.23 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2084 TRUE 805 CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- PDE4C ENSG00000105650.23 protein_coding - - chr19:18207965-18248200:- chr19:18211941:- chr19:18318775-18359010:- chr19:18322751:- chr19:10394251,chr19:10394258 chr19:18239666,chr19:18239670 NA NA chr19:10504927,chr19:10504934 chr19:18350476,chr19:18350480 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Cdc37_Hsp90_binding_domain(72%),Cdc37_N_terminal_kinase_binding(100%)|3'5'-cyclic_nucleotide_phosphodiesterase(38%) CDC37_M(20%),CDC37_N(100%)|PDEase_I(10%) 1 0 0 3394 390 ENST00000593124.1 ENST00000594617.7 upstream downstream none AACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAGGTGGAGGAG___AAATGTGCACTCATGGAGCAGGTGGCCCA...CCTGCTTCCGGCAGTTCTTCACTAAGATTAAG|GTCTTGCAGAcCCTGGTGCACTGTGCTGATCTGAGCAcCCCCACCAAGCCGCTGCCCCTGTACCGCCAG CFRQFFTKIK|VLQtLVHCADLStPTKPLPLYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11905 RAB11A::HACD3 ENSG00000103769.10::ENSG00000074696.13 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11A ENSG00000103769.10 protein_coding + + chr15:65726054-65891989:+ chr15:65792772:+ chr15:66018392-66184327:+ chr15:66085110:+ HACD3 ENSG00000074696.13 protein_coding + + chr15:65530418-65578349:+ chr15:65551676:+ chr15:65822756-65870687:+ chr15:65844014:+ chr15:65795450,chr15:65795450,chr15:65795732,chr15:65795443 chr15:65544998,chr15:65544997,chr15:65544991,chr15:65544982 NA NA chr15:66087788,chr15:66087788,chr15:66088070,chr15:66087781 chr15:65837336,chr15:65837335,chr15:65837329,chr15:65837320 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Protein_tyrosine_phosphatase-like_protein__PTPLA(100%) DENN(100%),uDENN(100%)|CS(19%),PTPLA(100%) 1 0 5 13 1893 ENST00000563580.5 ENST00000261875.10 downstream upstream duplicates(4) CCGTCGGGTCAGGAGATCCCGAGCCCCAGGCTGGCGTGGGCGAAGCGTACAATCCCTTCACCTTTCGTCACCCAGAGGCACAAGAATCCAGTTCGCGCCAACTGACCTGTTTCTTCCTTCCTCCCCGGCACTCTGGGAGTCCTGAGATTGCCTTGCTCGGTTCGTCTCAGACTTGCTAGATCTGAGCAGCTGCTGCTCCTCCACCAAGGGTGCTCACATTCTCCAGGAAACTCCCTTAAGGGTTAGCAACCGCCGAGTAGGTTTCGGTCCCAAGATAGAAAG|AACCCTGCCATCAGCATCcCTGAAAACGTGCTGCATTTCAAAG___CTCAAGGACATGGTGCCAAAGGAGACAATGTCTATGAATTTCACCTGGAGTTCTTAGACCTTGTGAAACCAGAG___CCTGTTTACAAACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11913 GARRE1::PLA2G4C ENSG00000166398.14::ENSG00000105499.14 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GARRE1 ENSG00000166398.14 protein_coding + + chr19:34254552-34355566:+ chr19:34300968:+ chr19:34745457-34846471:+ chr19:34791873:+ PLA2G4C ENSG00000105499.14 protein_coding - + chr19:48047843-48110817:- chr19:48102868:+ chr19:48551100-48614074:- chr19:48606125:+ chr19:34312646,chr19:34312638 chr19:48102489,chr19:48102478 NA NA chr19:34803551,chr19:34803543 chr19:48605746,chr19:48605735 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Domain_of_unknown_function_(DUF4745)(82%)| DUF4745(1%)| 2 0 0 64 6 ENST00000299505.8 unknown downstream upstream none GAATCAGAACCCTGACCCACTTACGGTTGCTGGGACAATTCCCCCTCCCGCATGTATTGCTGCAGTGCCCAGGACAGTAAAATGGACTACAAGCGGCGCTT...GGAGCATGTCATGGAAGCAGCCAGTCGGCTGACCTCGGCCATAAAGCCTGAGATCGCCAAGATGCTAATGGAACTTAGTGCTGGGGCTGCAAATTTTACGG...AATTCAGTCTCCAGGACATTGAG|GCGTTCCTGTGAAGGACCTCCTCACACACATCCTTTCCCAGTCTTCATCGTCCACACTTACAATGCTCAACAGCGGAGGAAACCAAG FSLQDIE|afl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11941 CNTN6::LINC01266 ENSG00000134115.13::ENSG00000224957.7 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE FALSE NA TRUE 2088 TRUE 806 CNTN6 ENSG00000134115.13 protein_coding + + chr3:1092658-1404217:+ chr3:1093120:+ chr3:1134342-1445901:+ chr3:1134804:+ LINC01266 ENSG00000224957.7 lncRNA + + chr3:536062-846561:+ chr3:842376:+ chr3:577745-888244:+ chr3:884059:+ chr3:1095937,chr3:1095935 chr3:838894,chr3:838889 NA NA chr3:1137621,chr3:1137619 chr3:880577,chr3:880572 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 1 1 3 62 ENST00000397479.6 ENST00000661103.1 downstream upstream none TCTCCCAGCTGCATAGACATTCCATACGGCTTGGTTCTGCCTGGACGCACAGCATGCCTGGCTGAGAGCTTGAAACAGAGTTCTGCAGAAAAACTGTAAAGATCCCGAGACATTTCCCTG|GAGCTTTAATATATAGTTGACACTTGAACAACATGGATCTGAACTACACAAGTCCACTTATTGGTGGATTTTCTTCAGCCTCTGCCACCCTTGAGACAACAAGACCAATACCTCCTCTTTTTCCTTCTCCTCAGCCTACTCAACTTGAAGATGGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11942 CNTN6::LINC01266 ENSG00000134115.13::ENSG00000224957.7 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE FALSE NA TRUE 2088 TRUE 806 CNTN6 ENSG00000134115.13 protein_coding + + chr3:1092658-1404217:+ chr3:1093120:+ chr3:1134342-1445901:+ chr3:1134804:+ LINC01266 ENSG00000224957.7 lncRNA + + chr3:536062-846561:+ chr3:840715:+ chr3:577745-888244:+ chr3:882398:+ chr3:1095937,chr3:1095935 chr3:838894,chr3:838889 NA NA chr3:1137621,chr3:1137619 chr3:880577,chr3:880572 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 0 0 3 26 ENST00000446702.7 ENST00000667456.2 downstream upstream mismatches(1) AAGATaCCGAGACATTTCCCTG|CAGGTCAAGTTGCTTCTTTTCAGTGATCATAATCAATTATCCAGGAAAAGGGACAGAAGAAATCAGGAAAAAGGAGAAT...TTCTTCAGCCTCTGCCACCCTTGAGACAACAAGACCAATACCTCCTCTTTTTCCTTCTCCTCAGCCTACTCAACTTGAAGATGGTGAGAATGAAGACCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11944 CCS::RBM14-RBM4 ENSG00000173992.9::ENSG00000248643.5 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2089 TRUE 807 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593714:+ chr11:66360624-66373490:+ chr11:66361185:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66638559:+ chr11:66384097-66413940:+ chr11:66406030:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Heavy-metal-associated_domain(39%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%),Zinc_knuckle(100%) HMA(1%)|RRM_1(43%),RRM_5(22%),zf-CCHC(100%),zf-CCHC_3(100%) 1 0 8 367 50 ENST00000533244.6 ENST00000511114.1 downstream upstream duplicates(1) CTGGTTGGTGCTCCTGCGCCGGAGGAGTTCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG___TTGGAGTTCGCGGTGCAGATGACCTGTCAGAGCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAG|GTAATTGGCGTCCGTGGTAACCAATCAGGAAGAGGATCTGcGGGAACGCCGGCCTTTTACTTTCTTGAGTGGCCAATCCGGT...CATTTTAGCGTTTTGTCAGAAGCGTCCGCGCCGCGAGGAGGAGGCCCTGCTGGTTTCTGTGCGG___GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCA MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVA|gnwrpw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11945 CCS::RBM14-RBM4 ENSG00000173992.9::ENSG00000248643.5 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2089 TRUE 807 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593714:+ chr11:66360624-66373490:+ chr11:66361185:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66639700:+ chr11:66384097-66413940:+ chr11:66407171:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Heavy-metal-associated_domain(39%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%),Zinc_knuckle(100%) HMA(1%)|RRM_1(40%),RRM_5(22%),zf-CCHC(100%),zf-CCHC_3(100%) 1 0 5 367 2875 ENST00000533244.6 ENST00000421355.1 downstream upstream duplicates(2) CGCCGCGCTGGTTGGTGCTCCTGCGCCGGAGGAGTTCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG___TTGGAGTTCGCGGTGCAGATGACCTGTCAGAGCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAG MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVA|gSCQDGEAVHRKPAPGGYRAGDSLTLRAVWEGAGM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11946 CCS::RBM14-RBM4 ENSG00000173992.9::ENSG00000248643.5 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2089 TRUE 807 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593300:+ chr11:66360624-66373490:+ chr11:66360771:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66639700:+ chr11:66384097-66413940:+ chr11:66407171:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(1%),Zinc_knuckle(100%) |RRM_1(40%),RRM_5(22%),zf-CCHC(100%),zf-CCHC_3(100%) 0 4 1 640 2875 ENST00000533244.6 ENST00000421355.1 downstream upstream none CCCGCGACGCCGCGCTGGTTGGTGCTCCTGCGCCGGAGGAGTTCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG|GCTCTTGTCAGGATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGCAGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGCAGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGCAAGAATAAG...TGTGTGTGGGCTGAAATTCCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGGTACCCCATCTCCGGGACGTTCTCGGCTCTGTGCGTTCAGTCCCTC MASDSGNQGTLCT|alvrmvklfignlpreateqeirslfeqygkvlecdiiknygfvhiedktaaedairnlhhyklhgvninveaskn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11947 CCS::RBM14-RBM4 ENSG00000173992.9::ENSG00000248643.5 G401 SRR8615739 SRR8639237 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2089 TRUE 807 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593714:+ chr11:66360624-66373490:+ chr11:66361185:+ RBM14-RBM4 ENSG00000248643.5 protein_coding + + chr11:66616626-66646469:+ chr11:66646027:+ chr11:66384097-66413940:+ chr11:66413498:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Heavy-metal-associated_domain(39%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(0%) HMA(1%)|RRM_1(18%) 1 1 0 367 2004 ENST00000533244.6 ENST00000500635.2 downstream upstream none TCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG___TTGGAGTTCGCGGTGCAGATGACCTGTCAGAGCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAG|GTGGGATGTGTGTGGGCTGAAATTCCGAGCTGCGGTTGTGCATGAGAATACACCCTTCGTGG...ACCGTGGACCTTAATTTACCTTGCTAAGTTCAGACCTTCTCTTCCTTTCCTTTCCTTTCCTCTCCTGCCCATTTTCCTGTTCTTCTGTCCTTCAATACTTC MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVA|gGMCVG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11988 GAS2::ENSG00000246225 ENSG00000148935.12::ENSG00000246225.7 G402 SRR8615740 SRR8639240 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GAS2 ENSG00000148935.12 protein_coding + + chr11:22625509-22813001:+ chr11:22775348:+ chr11:22647055-22834547:+ chr11:22796894:+ ENSG00000246225 ENSG00000246225.7 lncRNA + + chr11:22829380-22945393:+ chr11:22834907:+ chr11:22850926-22966939:+ chr11:22856453:+ NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site deletion/read-through high none Calponin_homology_(CH)_domain(100%),Growth-Arrest-Specific_Protein_2_Domain(57%)| CH(100%),FANCF(100%),GAS2(41%)| 2 10 2 67 50 unknown ENST00000499625.1 downstream upstream duplicates(3),mismatches(4) AAACATGAGTAGATTGCATTTTAAATCATTCAGGCTGTAGTGCAGATAATGAATTGAAAAGGTATAAAGTTGGAGGACGAGCATTCCACCGTTTTGGCTTGGAGAGTGTGGAGGTCAAGAGGGTGGCAGCTCATTCTGGGGACCTACCTCTTGAAATTCCAG|AGTTCCACTCTTTTTGTCGACAATAATATGGCGCCCAAACACGTGGGGCCTCAGAGAAGACTCTGGATCCGGAAGGAGTATCCCAAAACCAGAGCTAAGGTACCAGCTGGAGCCCACTGAAGCCTCACCGAGTTTGGGCTTCTCCTCCTGTGGAACTG___GAAACCAAAATCATGGTATTTTGAAAACCAGAGGTATGAATCTCCCTCGTTTGGCATCCCACTGGGCCTGGACCTGTTTCACTGCTAATGTTCTGCTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11992 ERBIN::GUSBP1 ENSG00000112851.16::ENSG00000291102.1 G402 SRR8615740 SRR8639240 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERBIN ENSG00000112851.16 protein_coding + + chr5:65883128-66082546:+ chr5:66078866:+ chr5:65178956-65378374:+ chr5:65374694:+ GUSBP1 ENSG00000291102.1 lncRNA + - chr5:21341833-21589372:+ chr5:21403078:- chr5:21341942-21589481:+ chr5:21403187:- chr5:66078867,chr5:66078868 chr5:21403080,chr5:21403079 NA NA chr5:65374695,chr5:65374696 chr5:21403189,chr5:21403188 NA NA sense antisense unknown 3'UTR intron inversion/3'-3' medium none Leucine_rich_repeat(100%),PDZ_domain(100%)| LRR_5(100%),LRR_8(100%),PDZ(100%)| 5 8 8 123 19 ENST00000699000.1 unknown downstream downstream duplicates(1),mismatches(1) GAAATAATGGAACTTGTGGTTAGAGGGAAAGAACCACTGTACAGAATATAAAGGAGACTGTTGAATTCATACCATATAAAACTTGTTAGGTTTTTAAACATAGCAATCAAGGCTACAAAAACAAACCTGTGTTGTTTTTGTATAGATTGTAGGTTTATTTTTGGATTTCATATACATGACTGAACTGTGTGCAAGGCAATAGTTA|TACAGATGCCAAAATGGACATTTGCTCACATATTGGAGCACGTTCTCAAAAATCTTTACTTTGGTCTTTAGAGTCTAGTAGAAGTACATGAGAAACTTAAAATACAATCTTAAGGACATTAGTATGATTTGTTAGAAAGCAGAAAATACAGTGATGACAGGGCTATCTTTAGGGGTGGTGGTGGTAATTAGTGTATTGGATCCTGAATTTAACATGAGGTTAAGTAGGAGTGAACAGTAATGGCAGTTTACTTTCCTTATTGATCAATTTTCTGACTCAAGAAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11998 FLRT2::LINC00911 ENSG00000185070.12::ENSG00000259107.2 G402 SRR8615740 SRR8639240 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2100 TRUE 808 FLRT2 ENSG00000185070.12 protein_coding + + chr14:85530144-85654428:+ chr14:85530534:+ chr14:85996488-86120772:+ chr14:85996878:+ LINC00911 ENSG00000259107.2 lncRNA + + chr14:85393828-85420550:+ chr14:85419684:+ chr14:85860172-85886894:+ chr14:85886028:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 2 0 947 136 ENST00000330753.6 ENST00000662110.1 downstream upstream mismatches(1) CCGAGCCCTGGGATCAGGGTGGCAGTTCTCAACGATGGGCAGGAGGGACCTCGGCGGCGAaCCCTAAAACAATACCATGCCCCGGGATCCCCGCTGCTGCCGCGCCAGCGTCTTCCCTTTCCACCTCCCTGACCCTGTCGGATTCGGATGAGCCCATTGCAAGGAGAAGACGCAGCCGTCAG|GAATTAAGAATGGGTCAATGAAATATACAGCTCCTTTCTGGAATGTACCTGTTCTGCTACAACCATGGATATCCTGACCTTTCTGTGCCTTTCAGGGACAAGGGT...ACAACTGAACAAcAAACAACAGAAAAAGAACACAAAAAAAGACGGcGGTACTCTTTCCCCTTTCCTTGCTTTCTCCTGCTACCAAAACAAACAACAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 11999 FLRT2::LINC00911 ENSG00000185070.12::ENSG00000259107.2 G402 SRR8615740 SRR8639240 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA TRUE 2100 TRUE 808 FLRT2 ENSG00000185070.12 protein_coding + + chr14:85530144-85654428:+ chr14:85552843:+ chr14:85996488-86120772:+ chr14:86019187:+ LINC00911 ENSG00000259107.2 lncRNA + + chr14:85393828-85420550:+ chr14:85419684:+ chr14:85860172-85886894:+ chr14:85886028:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 0 1361 136 ENST00000557419.5 ENST00000662110.1 downstream upstream mismatches(1) CACGGAGACCTTTGGGTTGATGGCAAGATTTGGAGGGCTGATTATGGCGCCTTTGATGTGAGGAGGTATTCCTGCAATCCTTCCGAGACACCTAAGCTGCT|GAATTAAGAATGGGTCAATGAAATATACAGCTCCTTTCTGGAATGTACCTGTTC...ACAACTGAACAAcAAACAACAGAAAAAGAACACAAAAAAAGACGGcGGTACTCTTTCCCCTTTCCTTGCTTTCTCCTGCTACCAAAACAAACAACAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12008 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 G402 SRR8615740 SRR8639240 SOFT_TISSUE rhabdoid_tumour primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11156626:- chrX:11135771-11684040:- chrX:11174746:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none none |Cyto_heme_lyase(100%) 0 1 1 26 2 ENST00000669054.1 ENST00000337414.9 upstream downstream none GAAACGTTAGTAGGTGCCCATAACTTCGGTGGTGGAGATCCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGA...CATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG|GTTCCCCCAGATCTCCAGAACGAAGTGCTGATCAGCCTGTTAGAGACCGATCCTGATGTCGTGGACTATTTACTCAGAAGAAAGGCTTCCCAATCATC___AAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12016 MAP4K4::AFF3 ENSG00000071054.17::ENSG00000144218.21 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE TRUE 1177 FALSE NA FALSE NA MAP4K4 ENSG00000071054.17 protein_coding + + chr2:101696850-101894690:+ chr2:101698538:+ chr2:102313312-102511152:+ chr2:102315000:+ AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99837524:- chr2:100161881-100808890:- chr2:100453986:- chr2:101790038,chr2:101790037 chr2:99862604,chr2:99862605 NA NA chr2:102406500,chr2:102406499 chr2:100479066,chr2:100479067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(6%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(40%),AF4_interaction_motif(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|AF-4(58%),AF-4_C(100%),AF4_int(100%) 9 17 14 439 112 ENST00000324219.9 ENST00000672756.2 downstream downstream duplicates(3),low_entropy(1) CGGCTGAGATACACAGAGCGACAGAGACATTTATTGTTATTTGTTTTTTGGTGGCAAAAAGGGAAAATGGCGAACGACTCCCCTGCAAAAAGTCTGGTGGACATCGACCTCTCCTCCCTGCGG___GATCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAG|GAGAGTAGATCTGGAGAAACCAACAGCTGTGTTGAAGAAATAATCCGG___GAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCCATTTCCAAATAAG___GACTCTCAGCTTGTATCCTCTGGACACAATAATCCAA___AGAAAGGTGATGCAGAGCCAGAGAGTCCAGACAATGGCACATCGAATACATC___AATGCTGGAAGATGACC MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYK|ESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNKDSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase kinase 4 STE STE20 MSN O95819 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 12019 REV1::AFF3 ENSG00000135945.10::ENSG00000144218.21 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA REV1 ENSG00000135945.10 protein_coding - - chr2:99400475-99490035:- chr2:99462496:- chr2:100016938-100106497:- chr2:100078958:- AFF3 ENSG00000144218.21 protein_coding - + chr2:99545419-100192428:- chr2:99974284:+ chr2:100161881-100808890:- chr2:100590746:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none BRCT_domain__a_BRCA1_C-terminus_domain(18%)| BRCT(0%),BRCT_2(0%)| 10 9 6 118 32 ENST00000258428.8 unknown upstream upstream duplicates(1) GCGAGGTGGATGGAGGAAGCGAGCTGAAAATGATGGCTGGGAAACATGG___GGTGGGTATATGGCTGCCAAGGTCCAGAAATTGGAGGAACAGTTTCGATCAGATGCTGCTATGCAGAAGGATGGGACTTCATCTACAATTTTTAGTGGAGTTGCCATCTATGTTAATGGATACACAG|ACTTCGGAAACCTCAGCAAGAGGAGGCTTAGTTGGTGCCTGGTGACTTCCTACAATGGATTGAAACCAATCTAATTTAACACCTGTGTGCTCATCAATAAGTGTACTCAAGCACAAAAGTGAGCACAGTGTTGAGCGATTCTGACACTGACTGCATGACAACCACAGACTCTGTATCCAAACACTCGCAGACAAGAAGCTAATTGCAGTGATGAAAGGCACACCACTAAAAGCATGAGTAATCGCTGCAGTGATGCACAGAT RGGWRKRAENDGWETWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYT|dfgnlskrrlswclvtsynglkpi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12020 UBXN7::ENSG00000286168 ENSG00000163960.12::ENSG00000286168.2 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 2104 TRUE 809 UBXN7 ENSG00000163960.12 protein_coding - - chr3:196347662-196432430:- chr3:196391813:- chr3:196074533-196159301:- chr3:196118684:- ENSG00000286168 ENSG00000286168.2 lncRNA + + chr3:195996262-196027694:+ chr3:196004939:+ chr3:195723133-195754565:+ chr3:195731810:+ chr3:196372148,chr3:196372153 chr3:196004924,chr3:196004919 NA NA chr3:196099019,chr3:196099024 chr3:195731795,chr3:195731790 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Thioredoxin-like(4%),UBA-like_domain(100%)| Thioredoxin_7(0%),UBA_4(100%)| 15 2 7 273 10 ENST00000296328.9 unknown upstream upstream duplicates(1) ATTTGGTG___CTCCTAAAAGACGACGGCCTGCACGTTCAATTTTTGATGGTTTCCGGGATTTTCAGACTGAAACTA___TTCGGCAAGAACAAGAATTAAGAAATGGAGGAGCTATCGATAAGAAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA|GCTCCAACTCCACCACCCTCGGATTTGAACAGCGGTAGCACCACCTCCTCTCCAGGTCTTCAGCCCCACGTCCCTCCCTGAACAATCCCTTCTTGTGAAATTCAGCAGTCAAGAAATCTGC FGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFET|aptpppsdlnsgsttsspglqphvpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12021 UBXN7::ENSG00000286168 ENSG00000163960.12::ENSG00000286168.2 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 2104 TRUE 809 UBXN7 ENSG00000163960.12 protein_coding - - chr3:196347662-196432430:- chr3:196391813:- chr3:196074533-196159301:- chr3:196118684:- ENSG00000286168 ENSG00000286168.2 lncRNA + + chr3:195996262-196027694:+ chr3:196026016:+ chr3:195723133-195754565:+ chr3:195752887:+ chr3:196372148,chr3:196372153 chr3:196004924,chr3:196004919 NA NA chr3:196099019,chr3:196099024 chr3:195731795,chr3:195731790 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Thioredoxin-like(4%),UBA-like_domain(100%)| Thioredoxin_7(0%),UBA_4(100%)| 0 2 0 273 4 ENST00000296328.9 ENST00000669433.1 upstream upstream duplicates(1) AAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA|GATATGAAGCTGTCAACTCATTTTGAAAACTGCTGGCTC...ATCATGAATCTAATCAG___CTTTGCTATTCTAGCTTTAGTTGGAAGAAGAAGCTTCCAAGTTAAAGATGGTAGACGAAATACTGACCCAGTTGTGTCCTTTCCC KLTTLADLFRPPIDLMHKGSFET|dmklsthfencw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12022 MAP4K4::ENSG00000288857 ENSG00000071054.17::ENSG00000288857.1 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 2105 TRUE 810 MAP4K4 ENSG00000071054.17 protein_coding + + chr2:101696850-101894690:+ chr2:101790776:+ chr2:102313312-102511152:+ chr2:102407238:+ ENSG00000288857 ENSG00000288857.1 lncRNA - - chr2:237923437-237962730:- chr2:237941794:- chr2:238832079-238871372:- chr2:238850436:- chr2:101791364 chr2:237954856 NA NA chr2:102407826 chr2:238863498 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Protein_kinase_domain(13%)| PK_Tyr_Ser-Thr(65%),Pkinase(65%)| 1 1 6 467 6 ENST00000324219.9 unknown downstream downstream mismatches(1) AAAAAGGGAAAATGGCGAACGACTCCCCTGCAAAAAGTCTGGTGGACATCGACCTCTCCTCCCTGCGG___GATCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAG___GGTCGACATGTTAAAACGGGTCAGTTGGCAGCCATCAAAGTTATGGATGTCACTGAG|GTAACAGCACACATCCCCAGCACCAGAGAGAGCAGAACAGACCTCATTCTCAAAGAACTGTCATTATTTGACCTGTCTTCCCTGGAAGACCAGCTCAAAACACT...TTTTTTTTTGACCCAGAACTTTCCCAGTGTTGAAGACTTACGCAGGGAGTGTTTGTGGAAAACACTTATAGCCAAAGGCTTTAGTTGTTGCgGC MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE|vtahipstresrtdlilkelslfdlssledqlkt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase kinase 4 STE STE20 MSN O95819 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12023 MAP4K4::ENSG00000288857 ENSG00000071054.17::ENSG00000288857.1 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 2105 TRUE 810 MAP4K4 ENSG00000071054.17 protein_coding + + chr2:101696850-101894690:+ chr2:101790776:+ chr2:102313312-102511152:+ chr2:102407238:+ ENSG00000288857 ENSG00000288857.1 lncRNA - - chr2:237923437-237962730:- chr2:237923722:- chr2:238832079-238871372:- chr2:238832364:- chr2:101791364 chr2:237954856 NA NA chr2:102407826 chr2:238863498 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein_kinase_domain(13%)| PK_Tyr_Ser-Thr(65%),Pkinase(65%)| 2 3 2 467 14 ENST00000324219.9 ENST00000686788.1 downstream downstream mismatches(3) CCTGGTCTGCGGCTGAGATACACAGAGCGACAGAGACATTTATTGTTATTTGTTTTTTGGTGGCAAAAAGGGAAAATGGCGAACGACTCCCCTGCAAAAAGTCTGGTGGACATCGACCTCTCCTCCCTGCGG___GATCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAG___GGTCGACATGTTAAAACGGGTCAGTTGGCAGCCATCAAAGTTATGGATGTCACTGAG|GGTCCCCTGCCCTCCAGCGAGCCTAGTTGAGCCCCAGCTGGACTCCAAGTCGAGCCTCTGCAGCCAGGTGTCCGCCAGATGTCTTCCACGGCCAGCAAGGGAACCGCCTGGGCACGCGTCAGTCTGGCCTGTTTCCTGATCCAGAAAATTATTTTCAGCTGCGCGTGACCTTCCACGGGGCCAGGACCGGAAAACTAGACAGCAGTGATCTTTTTAAAACCGTGGACTCTATGAACTAGGAAAGTCCCCTCCAAACTCGTCAACAGGAATTCAC MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE|gplpsseps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase kinase 4 STE STE20 MSN O95819 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12035 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE TRUE FALSE NA TRUE 2107 FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21899076,chr9:21899077 chr9:22098213,chr9:22098211 NA NA chr9:21899075,chr9:21899076 chr9:22098212,chr9:22098210 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 4 0 0 331 8 ENST00000644715.2 ENST00000428597.6 downstream upstream mismatches(1) CATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACC MTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|igfshmarniaastsrvlrstts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12040 COA1::HDAC9 ENSG00000106603.20::ENSG00000048052.25 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA COA1 ENSG00000106603.20 protein_coding - - chr7:43608456-43729717:- chr7:43665658:- chr7:43648055-43769316:- chr7:43705257:- HDAC9 ENSG00000048052.25 protein_coding + + chr7:18086949-19002416:+ chr7:18975806:+ chr7:18126572-19042039:+ chr7:19015429:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 0 1 1 252 33 ENST00000438444.5 ENST00000406451.8 upstream upstream none GAAGAACTCGTCATGtTCTTTGTAGCGTGGgGCTTCTtTTGCTCACAG___AGGTGCCTGCTTCCCCTTCTGCCATGATTGGAAGTTTCCTGAGGCCTCCCCAGCCATGTGGAACT|GCAAGTATTGGAAGTCAGTAAGGATGGTGGCTGTGCCAAGGGGCTGTGCTCTGGCTGGTGCTCAGTTGCAAGAGGAGACAGAGACCGTTTCTGCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12046 RARB::NGLY1 ENSG00000077092.20::ENSG00000151092.18 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE TRUE 1179 FALSE NA FALSE NA RARB ENSG00000077092.20 protein_coding + + chr3:24687887-25597932:+ chr3:25501323:+ chr3:24729378-25639423:+ chr3:25542814:+ NGLY1 ENSG00000151092.18 protein_coding - - chr3:25718944-25790039:- chr3:25764311:- chr3:25760435-25831530:- chr3:25805802:- chr3:25549807,chr3:25549807 chr3:25768611,chr3:25768610 NA NA chr3:25591298,chr3:25591298 chr3:25810102,chr3:25810101 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Zinc_finger__C4_type_(two_domains)(100%)|PNGase_C-terminal_domain__mannose-binding_module_PAW(100%),PUB_domain(25%),Rad4_transglutaminase-like_domain(100%),Transglutaminase-like_superfamily(100%) zf-C4(100%)|NUMOD3(0%),PAW(100%),PUB(0%),Rad4(100%),Transglut_core(100%) 40 44 44 343 217 ENST00000687676.1 ENST00000417874.6 downstream downstream duplicates(16),inconsistently_clipped(2),low_entropy(1),mismappers(2),mismatches(8) GAAGAATATGATTTACACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAAGTGCTTTGAAGTGGGAATGTCCAAAGAAT|GGAGAAACACATCTCATCTTTCCTAAAAAAGCTTCAGTGGAGCAGCTGCAAAAAATTCGTGACCTGATTGCCATAGAGAGAAGTAGCAGACTGGATGGCTCAAATAAGAGCCACAAAGTAAAGTCATCTCAGCAACCTGCAGCCAGTACCCAGCTTCCTACAACACCATCTTCAAATCCCAGTGGGTTAAACCAGCACACAAGGAACCGTCAAGGGCAGTCATCAGATCCACCATCTGC KNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKE|wrntshls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12047 NGLY1::RARB ENSG00000151092.18::ENSG00000077092.20 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NGLY1 ENSG00000151092.18 protein_coding - - chr3:25718944-25790039:- chr3:25764066:- chr3:25760435-25831530:- chr3:25805557:- RARB ENSG00000077092.20 protein_coding + - chr3:24687887-25597932:+ chr3:25227178:- chr3:24729378-25639423:+ chr3:25268669:- chr3:25757469,chr3:25756809,chr3:25756811,chr3:25757471 chr3:25247535,chr3:25246873,chr3:25246872,chr3:25247534 NA NA chr3:25798960,chr3:25798300,chr3:25798302,chr3:25798962 chr3:25289026,chr3:25288364,chr3:25288363,chr3:25289025 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none PUB_domain(100%)| NUMOD3(100%),PUB(100%)| 23 56 23 403 215 ENST00000417874.6 unknown upstream downstream duplicates(9),mismappers(4),mismatches(5) CAGCTGCAAAAAATTCGTGACCTGATTGCCATAGAGAGAAGTAGCAGACTGGATGGCTCAAATAAGAGCCACAAAGTAAAGTCATCTCAGCAACCTGCAGCCAGTACCCAGCTTCCTACAACACCATCTTCAAATCCCAGTGGGTTAAACCAGCACACAAGGAACCGTCAAGGGCAGTCATCAGATCCACCATCTGCTTCAACG|CAAACATATTTACCTCCTCAGTGAGCCCACGAGCCCATCAAAGAACATCTCTTAAATGGCAAACATGCTGTCCCAGCCCTGCATGTCTCCTAAGCAACATCTTTACAGTGTCTGACCCAcCAGTTCTGGAATAGTGGACTACAACTCGAAACA___AGCAGCCTGATAGGAAAGGACATGGAGTTGGGGAGAATCTCCCAGAAAAGTGAAGGGAGATACTATTTTTGATTGAGT QLQKIRDLIAIERSSRLDGSNKSHKVKSSQQPAASTQLPTTPSSNPSGLNQHTRNRQGQSSDPPSAST|qtylppq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12057 TRMT1L::SWT1 ENSG00000121486.12::ENSG00000116668.13 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRMT1L ENSG00000121486.12 protein_coding - - chr1:185118101-185157072:- chr1:185137606:- chr1:185087233-185126204:- chr1:185106738:- SWT1 ENSG00000116668.13 protein_coding + + chr1:185157080-185291781:+ chr1:185179816:+ chr1:185126212-185260913:+ chr1:185148948:+ chr1:185129018,chr1:185129020 chr1:185179716,chr1:185179714 NA NA chr1:185098150,chr1:185098152 chr1:185148848,chr1:185148846 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none N2_N2-dimethylguanosine_tRNA_methyltransferase(71%)|PIN_domain(100%) Met_10(100%),TRM(33%)|PIN_4(100%) 6 2 1 234 9 ENST00000367506.10 unknown upstream upstream duplicates(1) CCGAACTGAATATTACAAGGAACTAGCAGCCAGAATTGTTGTAGCTGCAGTGGCAAG___AGCTGCAGCCCGATGCAACAAAGGCATAGAAGTACTGTTTGCAGTGGCTCTGGAACATTTTGTGTTGGTAGTTGTGAGAGTTTTGAGGGGACCTACTTCAGCAGATGAAACAGCCAAGAAGATTCAATACCTGATCCATTGTCAGTGGTGTGAAGAGAGAATTTTTCAGAAGGATGGTAATATGGTAGAAG|GGACAGTTTCTCATCTGGAGGCAATTTTGCCCCTCAGGGGACATTTGGCAATGCCAGGAAACATTTTCGATTGTCAAGATTGAGGTTGGGG RTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSADETAKKIQYLIHCQWCEERIFQKDGNMVE|gtvshleailplrghlampgnifdcqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12059 TTF1::CCNY ENSG00000125482.13::ENSG00000108100.18 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2111 TRUE 811 TTF1 ENSG00000125482.13 protein_coding - - chr9:132375548-132406851:- chr9:132386556:- chr9:135250935-135282238:- chr9:135261943:- CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35289401:+ chr10:35535953-35861597:+ chr10:35578329:+ chr9:132382005,chr9:132382007 chr10:35254765,chr10:35254763 NA NA chr9:135257392,chr9:135257394 chr10:35543693,chr10:35543691 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Myb-like_DNA-binding_domain(100%)|Cyclin__N-terminal_domain(100%) Myb_DNA-bind_6(100%)|Cyclin(100%),Cyclin_N(100%) 0 1 4 75 5 ENST00000612514.4 ENST00000490012.6 upstream upstream none TCGGCGTATaTACTATGGCATGAATGCCCTGCGGGCCAAGGTCAGCCTTATTGAAAG___GTTGTATGAAATAAATGTGGAAGATACTAATGAAATAGACTGGGAAGATCTTGCTAGTGCCATAGG|GCCCTCCAGAAAAAGGAAGAAAAGTGGGAAG___AGACAGAATCTGGGTGTCACCCGGGCTGAAGTGCAGTGGCACCATCAAAGCTCTCTGCAGCCTCGAACTC RRIYYGMNALRAKVSLIERLYEINVEDTNEIDWEDLASAIg|psrkrkksgkrqnlgvtraevqwhhqsslqprt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12060 TTF1::CCNY ENSG00000125482.13::ENSG00000108100.18 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2111 TRUE 811 TTF1 ENSG00000125482.13 protein_coding - - chr9:132375548-132406851:- chr9:132386556:- chr9:135250935-135282238:- chr9:135261943:- CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35483404:+ chr10:35535953-35861597:+ chr10:35772332:+ chr9:132382005,chr9:132382007 chr10:35254765,chr10:35254763 NA NA chr9:135257392,chr9:135257394 chr10:35543693,chr10:35543691 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Myb-like_DNA-binding_domain(100%)|Cyclin__N-terminal_domain(100%) Myb_DNA-bind_6(100%)|Cyclin(100%),Cyclin_N(100%) 0 1 1 75 306 ENST00000612514.4 ENST00000470025.1 upstream upstream none TGGCATGAATGCCCTGCGGGCCAAGGTCAGCCTTATTGAAAG___GTTGTATGAAATAAATGTGGAAGATACTAATGAAATAGACTGGGAAGATCTTGCTAGTGCCATAGG|ATTTGAACATGGAATTCAATCCTTCAGATCATCCTCGGGCCAGCACAATATTCCTCAGTAAATCTCAGACGGACG___TGAGAGAAAAACGCAAGAGTCTCTTCATTAACCATG GMNALRAKVSLIERLYEINVEDTNEIDWEDLASAIg|fehgiqsfrsssgqhnipq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12082 CLIP1::TMEM132C ENSG00000130779.22::ENSG00000181234.10 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122309762:- chr12:122755979-122907216:- chr12:122794309:- TMEM132C ENSG00000181234.10 protein_coding + - chr12:128267170-128707911:+ chr12:128685155:- chr12:128751715-129192456:+ chr12:129169700:- chr12:122294559,chr12:122294705,chr12:122294606,chr12:122294565,chr12:122294566,chr12:122294590 chr12:128686805,chr12:128686809,chr12:128686596,chr12:128686808,chr12:128686808,chr12:128687023 NA NA chr12:122779106,chr12:122779252,chr12:122779153,chr12:122779112,chr12:122779113,chr12:122779137 chr12:129171350,chr12:129171354,chr12:129171141,chr12:129171353,chr12:129171353,chr12:129171568 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none CAP-Gly_domain(100%)| CAP_GLY(100%)| 46 42 141 359 99 ENST00000620786.5 unknown upstream downstream duplicates(14),mismatches(3) GCGGAAGATGCCATGCAGATAATGGAACAGATGACCAAAGAGAAGACTGAGACTCTGGCCTCCTTGGAGGACACCAAGCAAACAAATGCAAAACTACAGAATGAA___TTGGACACACTTAAAGAAAACAACTTGAAAAATGTGGAAGAGCTGAACAAATCAAAAGAACTCCTGACTGTAGAGAATCAAAAAATGGAAGAATTTAGGAAAGAAAT___AGAAACCCTAAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCGTTGCAAGAAGAGAACGTTAAACTTGCTGAGGAGCTGGGGAGAAGCAGGGACGAAGTCACAAGTCATCAAAAG|GCAGAGGACACTGGCAAAATTGAGAAGAAAGCAGGGATTGGCAGAGCCCTGAGCCCGGATTTAGGAGGCTTCCCAGGATGTGGGAAGACTCCTGTCAGAGCTTCTTGTCCTGGAGGGGCCACCGTTTCAGGACATTCACCAGGACCTGACTTTGGGACATTAGTTTAGAATCCCTTTCCTCTCGTTGCCGGTACCTGTTCTCACCCCAGAGAACATCTGGCATCTCCTGTGCAATGTGCCCTTCCCTTGCAGTGGCCAGAGCTGAAGTTTTACATTTTAAGGAGGTCTCTCT AEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQK|aedtgkiekkagigralspdlggfpgcgktpvrascpggatvsghspgpdfgtlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 12083 EZH2::ZCCHC8 ENSG00000106462.12::ENSG00000033030.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1182 FALSE NA FALSE NA EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148816684:- chr7:148504349-148581413:- chr7:148513776:- ZCCHC8 ENSG00000033030.16 protein_coding - - chr12:122471600-122500932:- chr12:122478292:- chr12:122956147-122985479:- chr12:122962839:- chr7:148815886,chr7:148815889 chr12:122478674,chr12:122478674 NA NA chr7:148512978,chr7:148512981 chr12:122963221,chr12:122963221 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Polycomb_repressive_complex_2_tri-helical_domain(100%),WD_repeat_binding_protein_EZH2(100%)| EZH2_WD-Binding(100%),PRC2_HTH_1(100%)| 54 35 80 436 228 ENST00000683292.1 ENST00000633063.3 upstream downstream duplicates(14),low_entropy(7),mismatches(10) AGAAGAAGAAGAGAAGAAAGATGAAACTTCGAGCTCCTCTG___AAGCAAATTCTCGGTGTCAAACACCAATAAAGATGAAGCCAAATATTGAACCTCCTGAGAATGTGGAGTGGAGTGGTGCTGAAGCCTCAATGTTTAGAGTCCTCATTGGCACTTACTATGACAATTTCTGTGCCATTGCTAGGTTAATTGGGACCAAAACATGTAGACAG___GTGTATGAGTTTAGAGTCAAAGAATCTAGCATCATAGCTCCAGCTCCCGCTGAGGATGTGGATACTCCTCCAAGGAAAAAGAAGAGGAAACACCG|GAATGGAGGATCTTTGGTTCCATACCAATGCAGGCATGTCAGCAGAAGGATGTGTTTGCCAATTACCTTACTTCTAACTTCCAAGCG___CCAGGTGTGAAGTCTGGCAACAAGAGGTCTTCATCTCACTCTAGCCCAGGTAGTCCAAAGAAGCAGAAGAATGAAAGCAACTCAGCGGGATCTCCCGCCGACATGGAGCTCGATTCAG___ATATGGAGG EEEEKKDETSSSSEANSRCQTPIKMKPNIEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSIIAPAPAEDVDTPPRKKKRKHr|nggslvpyqcrhvsrrmclpitllltskrqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense TRUE zinc finger, CCHC domain containing 8 2 Spitzoid tumour epithelial fusion translocation 12085 NUP153::ENSG00000234261 ENSG00000124789.12::ENSG00000234261.6 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2118 FALSE NA NUP153 ENSG00000124789.12 protein_coding - - chr6:17615035-17706925:- chr6:17665239:- chr6:17615266-17707156:- chr6:17665470:- ENSG00000234261 ENSG00000234261.6 lncRNA - - chr6:14660285-15090170:- chr6:14790098:- chr6:14660516-15090401:- chr6:14790329:- chr6:17663725,chr6:17663729 chr6:14865267,chr6:14865268 NA NA chr6:17663956,chr6:17663960 chr6:14865498,chr6:14865499 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Nucleoporin_Nup153-like(55%)| Nup153(27%)| 1 0 4 211 4 ENST00000262077.3 ENST00000629853.2 upstream downstream none CAAGCCCTTTAGCG___GATGCAAAAAGAATTCCATCCATTGTTTCTTCTCCTCTGAATTCT___CCTCTTGATAGGAGTGGGATAGATATCACAGATTTTCAGGCCAAAAGAGAAAAG___GTGGATTCTCAATATCCTCCTGTTCAGAGACTTATGACCCCAAAGCCAGTTTCCATAGCAACAAATCGAAGTGTTTATTTTAAACCATCTCTGACTCCTTCTGGTGAATTCAGGAAGACTAATCAAAGAATAGATAAgAAGTGCAGT|GAAGCTGTGGAGACTACCAAATGGACTCGTCTAGATTTCACATGCAACGTGGCTCTGCCTTCCC...GAGCACTCTGGGCCTTTCCATGGAGACAGAATGAATAGATAATG___TTATCACCTGGAGAGCTGTACATGCACAAGAAATAACTTTTGGGAGATCCCAGTGAG SPLADAKRIPSIVSSPLNSPLDRSGIDITDFQAKREKVDSQYPPVQRLMTPKPVSIATNRSVYFKPSLTPSGEFRKTNQRIDkKCS|eavettkwtrldftcnvalps NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12086 CCDC91::ASIC2 ENSG00000123106.11::ENSG00000108684.15 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1183 FALSE NA FALSE NA CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28484165:+ chr12:28286182-28734444:+ chr12:28637098:+ ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33112067:- chr17:31340105-32501983:- chr17:31439085:- chr12:28509421,chr12:28509420,chr12:28509419 chr17:33127442,chr17:33127443,chr17:33127444 NA NA chr12:28662354,chr12:28662353,chr12:28662352 chr17:31454460,chr17:31454461,chr17:31454462 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Amiloride-sensitive_sodium_channel(44%) |ASC(8%) 21 49 43 449 80 ENST00000539107.5 ENST00000359872.6 downstream downstream duplicates(4),mismatches(4),multimappers(1) CAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG___GAAACTGTTAAGGCAGCAATAATAGAAGAGCAGAAACGAAGTGAAAAGGCTGTGGAAGAGGCAGTGAAAAGAACAAGAGATGAATTGATAGAGTATATAAAAGAACAGAAAAGG|GTGTTTACAAAATATGGGAAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAACCTCTGCTCACCACGGTCAAGGGGGGGACAGGCAACGGGCTGGAGATCATGCTGGACATTCAGCAGGATGAGTACCTGCCCATCTGGGGAGAGACAG___AGGAAACGACATTTGAAGCAGGAGTGAAAGTTCAGATCCACAGTCAGTCTGAGCCACCTTTCATCCAAGAGCTGGG KDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKR|VFTKYGKCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12088 THADA::ENSG00000285548 ENSG00000115970.19::ENSG00000285548.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43320446:- chr2:43457990-43823177:- chr2:43547585:- ENSG00000285548 ENSG00000285548.1 lncRNA + + chr2:50324643-50345598:+ chr2:50335909:+ chr2:50551781-50572736:+ chr2:50563047:+ chr2:43318595,chr2:43318598 chr2:50330651,chr2:50330648 NA NA chr2:43545734,chr2:43545737 chr2:50557789,chr2:50557786 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none THADA/TRM732__DUF2428(100%)| DUF2428(100%)| 12 14 20 67 34 ENST00000405975.7 ENST00000649515.1 upstream upstream duplicates(4),mismatches(5) CTTCTCCAG___GTTTTTCATTTGTTGCAAGCCTACTCAGACTCCAAACACGGAACGAATTCAGACTTCCAGCACGAGCTGACTGACATCACTGTTTGTACCAAAGCCAAACTCTGGCTGGCCAAGAG___GCAAAATCCATGTTTGGTGACCAGAGCTGTATATATTGATATTCTCTTCCTATTGACTTGCTGCCTCAACAGATCTGCAAAGGACAACCAGCCAG|AGCAGAAAAGACCCACTGTTGGAGAGGGGTTCATCTGTCACTTGAGGGGCAGCAGCAATTTATCAGTTCCTGTGCCAGATGTTTACATAATATCAAGTCTTCACAACAGTCCTACAGAGGCCCTATTTCACTCCAGGCAAAACCAAGGCTCAGAGGCTTAGGAACTGCCCAAGGTCAGATAGTTAGTAGACGCAATGAGAATTATAAGAGTAATCCTTTATGTCACAAGGGAATTCCAGAATTCCTGTAATGTTATTTTAAG LLQVFHLLQAYSDSKHGTNSDFQHELTDITVCTKAKLWLAKRQNPCLVTRAVYIDILFLLTCCLNRSAKDNQP|eqkrptvgegfichlrgssnlsvpvpdvyiisslhnsptealfhsrqnqgsea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12089 SFSWAP::EP400 ENSG00000061936.10::ENSG00000183495.15 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1185 FALSE NA FALSE NA SFSWAP ENSG00000061936.10 protein_coding + + chr12:131711081-131799738:+ chr12:131714953:+ chr12:132195626-132284283:+ chr12:132199498:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132050323:+ chr12:132434487-132565005:+ chr12:132534868:+ chr12:131716896,chr12:131716895 chr12:132047180,chr12:132047176 NA NA chr12:132201441,chr12:132201440 chr12:132531725,chr12:132531721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Alternative_splicing_regulator__(100%)| DRY_EERY(100%)| 14 13 18 183 126 ENST00000261674.9 ENST00000389561.7 downstream upstream duplicates(4),low_entropy(1),mismatches(6) TCTGAAGAGGAGGCGCGAATAGAGGCCCTGTGTGATGAAGAGAGGTATTTAGCCTTGCATACGGACTTGCTTGAGGAGGAGGCAAGGCAAG___AGGAAGAATACAAGCGATTGAGTGAAGCACTAGCAGAGGATGGGAGCTACAATGCCGTGGGGTTCACTTACGGTAGCGACTATTACGACCCGTCAGAGCCGACGGAGGAGGAGGAGCCTTCCAAACAGAGAG|AGTAAAAACAACCGTCCTCTCCGTACGAGCCAGATCTATGCCCAGGATGAGAATGCCACACACACCCAGCTGTACACGAGCCACTTTGACTTAATGAAAATGACTGCTGGCAAGAGGAGTCCCCCAATCAAACCTCT___GCTTGGCATGAATCCCTTTCAGAAGAACCCCAAGCACGCGTCTGTGTTGGCAGAAAG___TGGAATCAACTATGACAAGCCGCT SEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQR|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12105 KCNH1::HHAT ENSG00000143473.14::ENSG00000054392.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KCNH1 ENSG00000143473.14 protein_coding - - chr1:210676823-211134165:- chr1:211103496:- chr1:210850165-211307507:- chr1:211276838:- HHAT ENSG00000054392.13 protein_coding + - chr1:210328252-210676296:+ chr1:210473790:- chr1:210501596-210849638:+ chr1:210647134:- chr1:211101176,chr1:211101178 chr1:210484944,chr1:210484943 NA NA chr1:211274518,chr1:211274520 chr1:210658288,chr1:210658287 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none PAS_domain(65%)| PAS(22%),PAS_9(1%)| 2 1 22 45 4 ENST00000367007.5 unknown upstream downstream duplicates(4) CAAGCTGTCTGGCTATCACAGGGCAGAAGTGATGCAAAAAAGCAGCACCTGCAG___TTTTATGTATGGGGAGCTGACTGATAAAGACACGATTGAAAAAGTGCGGCAAACATTTGAGAACTATGAGATGAATTCCTTTGAAATTCTGATGTACAAGAAGAACA|CAAGGAGGACCTGACCCAGCATGAACTGAGATAAAGGAAGAGAAGAAGAGGACAGTCATCAAGGTGGCTGTGGGAAAGGAGATGCAGGAGGAGACAATGGCAGGAGAAATTAAGTCAAATTtAGTCTTTGTGaGCAG KLSGYHRAEVMQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKN|trrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12106 ENSG00000283952::HHAT ENSG00000283952.1::ENSG00000054392.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283952 ENSG00000283952.1 protein_coding - - chr1:211082872-211188533:- chr1:211103496:- chr1:211256214-211361875:- chr1:211276838:- HHAT ENSG00000054392.13 protein_coding + - chr1:210328252-210676296:+ chr1:210473790:- chr1:210501596-210849638:+ chr1:210647134:- chr1:211101176,chr1:211101178 chr1:210484944,chr1:210484943 NA NA chr1:211274518,chr1:211274520 chr1:210658288,chr1:210658287 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none PAS(22%),PAS_9(1%)| 2 1 22 45 4 ENST00000638880.1 unknown upstream downstream duplicates(4) CAAGCTGTCTGGCTATCACAGGGCAGAAGTGATGCAAAAAAGCAGCACCTGCAG___TTTTATGTATGGGGAGCTGACTGATAAAGACACGATTGAAAAAGTGCGGCAAACATTTGAGAACTATGAGATGAATTCCTTTGAAATTCTGATGTACAAGAAGAACA|CAAGGAGGACCTGACCCAGCATGAACTGAGATAAAGGAAGAGAAGAAGAGGACAGTCATCAAGGTGGCTGTGGGAAAGGAGATGCAGGAGGAGACAATGGCAGGAGAAATTAAGTCAAATTtAGTCTTTGTGaGCAG MQKSSTCSFMYGELTDKDTIEKVRQTFENYEMNSFEILMYKKN|trrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12119 NAV1::CSRP1-AS1 ENSG00000134369.16::ENSG00000224536.2 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAV1 ENSG00000134369.16 protein_coding + + chr1:201539127-201826969:+ chr1:201539342:+ chr1:201508255-201796097:+ chr1:201508470:+ CSRP1-AS1 ENSG00000224536.2 lncRNA + - chr1:201507241-201534784:+ chr1:201510001:- chr1:201476369-201503912:+ chr1:201479129:- chr1:201564554 chr1:201520504 NA NA chr1:201533682 chr1:201489632 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 8 2 12 98 12 ENST00000685211.1 unknown downstream downstream duplicates(2),mismatches(3) CCGCCTCCCTCCTCATTGTGGGGCCGGGGCCGGCGGCTGCCCTAGTGCGGGGCCCGAGGCTGGAGTGCGCGGCGGACGCCAAGCCTGGTGCGAGGGGCCGAGGCGGCCTGGGGAGCCCCGGGAAACTTTGTGCTCGCGAGAAGCGGACCCCGCACCCGCGCTGCCCTTGGGGATGCGCGACTCTGCGCGGCTGCGGCGCGGACCCGGAGCCCGGGCGGGCAGGCGCTCCG|CCTCACACTCAGGTCCTCTTCACTTGGGATCAATGCGGAAAAGAAGGGTTTCACCACAGGAGAGGAGAGAGAAGATGTAGCATCAGGATGCTGATGAGGGAGGAAAGAGAAGAAAAGATGCCAGAGGAAGCAGCAGACAAAGTTGGAAGCTGGAGGACAGGGGCCCTACTTCCTGCCTGTAACAGGCCCCACTTCATTCCTAGCAGCCATCAAATACCAACCCAGAAGTGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12120 ESYT2::ENSG00000286016 ENSG00000117868.18::ENSG00000286016.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ESYT2 ENSG00000117868.18 protein_coding - - chr7:158730995-158830253:- chr7:158788004:- chr7:158523686-158622944:- chr7:158580695:- ENSG00000286016 ENSG00000286016.1 lncRNA + - chr12:127130005-127207706:+ chr12:127163361:- chr12:127614550-127692251:+ chr12:127647906:- chr7:158775292,chr7:158775295 chr12:127169030,chr12:127169030 NA NA chr7:158567983,chr7:158567986 chr12:127653575,chr12:127653575 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Synaptotagmin-like_mitochondrial-lipid-binding_domain(75%)| SMP_LBD(35%)| 4 6 10 588 15 ENST00000251527.10 unknown upstream downstream duplicates(1),mismatches(1) CAAACACCCACCTTAGCACCTTTAGTTTCACGAAGGTCGACGTGGGCCAGCAG___CCCCTCAGGATCAATGGTGTTAAGGTATACACTGAAAATGTAGACAAA...ATTAG___TTTTGTAGGAAATTGTGAGATTGATTTGGAGATCAAACGATATTTTTGTAGAGCTGGTGTGAAAAGTATCCAG___ATTCATGGTACCATGCGGGTGATCCTGGAACCGTTGATTGGAGATATGCCCTTAGTTGGAGCTTTGTCTATCTTCTTCCTTAGGAAACCA|CTACCTTGATGCTGAACATCCCCTGAAGCAACAGGACTGCATGAGCTTGGTGTGGCTGAGCCCATGTCCTAATGAACATCCAGAAAAGAAAGACACTCAGAAAGCCAGGAAAATGGAAGAATTTTTTTTTTCAGCCAGCCAGGCACCTGACAGTAATCAAAATCTGTAAAGAACAGGATGTGGAGCCTCCTCTGCTTGTTCAGCACGAACATTTTGTG___GGTGTACCCAAAGCAACCAATGGAACAAAGAATTGGACAAAACGCACAAACAAAGCAAGAAGGAATGAAG ISFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKP|lp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12121 ORC4::HOOK3 ENSG00000115947.14::ENSG00000168172.9 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1191 TRUE 2122 TRUE 812 ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:148020633:- chr2:148687965-148779173:- chr2:148778202:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43007847:+ chr8:42752089-42885678:+ chr8:42862990:+ chr2:147983858,chr2:147983863 chr8:43002614,chr8:43002609 NA NA chr2:148741427,chr2:148741432 chr8:42857757,chr8:42857752 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |HOOK_protein_coiled-coil_region(29%) |HOOK(17%) 3 10 5 221 137 ENST00000536575.5 ENST00000307602.9 upstream upstream none CCGGGAGTGGTTGTGTACGGTCCGCAGCGGCAGGTGAAGcCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTG|AGAGAAGCTGCATGAGGCCAATAATGAACTACAGAAGAAGAGAGCCATTATTGAAGATCTCGAGCCAAGATTTAACAACAGCT___CCTTAAAAATTGAAGAATTACAAGAAGCTTTACGAAAGAAAGAGGAAGAAATGAAGCAAATGGAAGAACGATACAAAAAATACTTAGAGAAAGCCAAAAGT___GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATC...AAAACAAAGAGTCAGAGAGAGATGGAAGAGAAATATATTGTTAGTGCCTGGTACAATATG___GGAATGACCCTGCATAAAAAGGCAGCTGAAGATAGACTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 12122 ORC4::HOOK3 ENSG00000115947.14::ENSG00000168172.9 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1192 TRUE 2122 TRUE 812 ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:148020608:- chr2:148687965-148779173:- chr2:148778177:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43007847:+ chr8:42752089-42885678:+ chr8:42862990:+ chr2:147983858,chr2:147983863 chr8:43002614,chr8:43002609 NA NA chr2:148741427,chr2:148741432 chr8:42857757,chr8:42857752 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |HOOK_protein_coiled-coil_region(29%) |HOOK(17%) 0 5 11 243 137 ENST00000440042.1 ENST00000307602.9 upstream upstream none CCGGGAGTGGTTGTGTACGGTCCGCAGCGGCAGGTGAAGcCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTGGTAAATGCAGGCTTTTATGCGAGAG|AGAGAAGCTGCATGAGGCCAATAATGAACTACAGAAGAAGAGAGCCATTATTGAAGATCTCGAGCCAAGATTTAACAACAGCT___CCTTAAAAATTGAAGAATTACAAGAAGCTTTACGAAAGAAAGAGGAAGAAATGAAGCAAATGGAAGAACGATACAAAAAATACTTAGAGAAAGCCAAAAGT___GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATCAGCTCCAGGAACGAGACCGACTGTcCCACTCATTAGAG___AAAGAATATGAGAAAACAAAGAGTCAGAGAGAGATGGAAGAGAAATATATTGTTAGTGCCTGGTACAATATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 12123 ORC4::HOOK3 ENSG00000115947.14::ENSG00000168172.9 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2122 TRUE 812 ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:148020633:- chr2:148687965-148779173:- chr2:148778202:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43010305:+ chr8:42752089-42885678:+ chr8:42865448:+ chr2:147983858,chr2:147983863 chr8:43002614,chr8:43002609 NA NA chr2:148741427,chr2:148741432 chr8:42857757,chr8:42857752 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |HOOK_protein_coiled-coil_region(24%) |HOOK(13%) 0 1 4 221 154 ENST00000536575.5 ENST00000307602.9 upstream upstream none TGCCGGGAGTGGTTGTGTACGGTCCGCAGCGGCAGGTGAAGcCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTG|CCTTAAAAATTGAAGAATTACAAGAAGCTTTACGAAAGAAAGAGGAAGAAATGAAGCAAATGGAAGAACGATACAAAAAATACTTAGAGAAAGCCAAAAGT___GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATCAGCTCCAGGAACGAGACCGACTGTTCCACTCATTAGAG___AAAGAATATGAGAAAACAAAGAGTCAGAGAGAGATGGAAGAGAAATATATTGTTAGTGCCTGGTACAATATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 12124 AP2B1::LINC02398 ENSG00000006125.18::ENSG00000256287.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2123 TRUE 813 AP2B1 ENSG00000006125.18 protein_coding + + chr17:35578046-35726413:+ chr17:35717349:+ chr17:33905065-34053432:+ chr17:34044368:+ LINC02398 ENSG00000256287.1 lncRNA + + chr12:20014780-20098868:+ chr12:20037883:+ chr12:20167714-20251802:+ chr12:20190817:+ chr17:35722317,chr17:35722310 chr12:20033880,chr12:20033871 NA NA chr17:34049336,chr17:34049329 chr12:20186814,chr12:20186805 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Adaptin_C-terminal_domain(100%),Adaptin_N_terminal_region(100%),Beta2-adaptin_appendage__C-terminal_sub-domain(79%)| Adaptin_N(100%),Alpha_adaptinC2(100%),B2-adapt-app_C(55%),Cnd1(100%),Cnd3(100%),HEAT(100%),HEAT_2(100%)| 2 4 10 1280 10 ENST00000621914.4 unknown downstream upstream duplicates(1),mismatches(2) TTTACTCACCGCCAAGGGCACATCTATATGGAAATGAACTTCACaAATAAAGCTCTGCAGaACATGACAGATTTTGCAATCCAGTTTAACAtAAATA...GCAAAATGG___AGCGCCAGGTCTTCCTTGCAACATGGAAGGATATTCCCAATGAAAATGAACTTCAGTTTCAGATTAAGGAATGTCATTTAAATGCTG___ACACTGTTTCCAGCAAGTTGCAAAACAACAATGTTTATACTATTGCCAAGAGGAATGTGGAAGGGCAGGACATGCTGTACCAATCCCTGAAGCTCACTAATGGCATTTGGATTTTGGCCGAACTACGTATCCAGCCAGGAAACCCCAATTACACG|ATCTCTTTAATGTCTGGCTTTAATAGAAGACAGCTGATTCCCTTACAGCTGCTCTGCATCCAATCTTTTGTAACATGTTGTTTTGGTGGAAGGAAATGAAGATTCCAGCCTCgCA...AATTTGATAACAGAAGAATCTTTTAGTAACATTTTCAGGTAGTTGTGAGTAGTCTCTTTTGATATTATACAAAAATTCAAGTGATCGTTTCTTAAAGTTCAGTTGCGATGTG KMERQVFLATWKDIPNENELQFQIKECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYT|islmsgfnrrqliplqllciqsfvtccfggrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12125 AP2B1::LINC02398 ENSG00000006125.18::ENSG00000256287.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2123 TRUE 813 AP2B1 ENSG00000006125.18 protein_coding + + chr17:35578046-35726413:+ chr17:35717349:+ chr17:33905065-34053432:+ chr17:34044368:+ LINC02398 ENSG00000256287.1 lncRNA + + chr12:20014780-20098868:+ chr12:20098752:+ chr12:20167714-20251802:+ chr12:20251686:+ chr17:35722317,chr17:35722310 chr12:20033880,chr12:20033871 NA NA chr17:34049336,chr17:34049329 chr12:20186814,chr12:20186805 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Adaptin_C-terminal_domain(100%),Adaptin_N_terminal_region(100%),Beta2-adaptin_appendage__C-terminal_sub-domain(79%)| Adaptin_N(100%),Alpha_adaptinC2(100%),B2-adapt-app_C(55%),Cnd1(100%),Cnd3(100%),HEAT(100%),HEAT_2(100%)| 1 0 1 1280 3 ENST00000621914.4 ENST00000536666.1 downstream upstream none CAGGACATGCTGTACCAATCCCTGAAGCTCACTAATGGCATTTGGATTTTGGCCGAACTACGTATCCAGCCAGGAAACCCCAATTACACG|GAAACTTCAGGCTACCATACCTGCTTCAAC...ATCTTAGTTCTGGAGAGTTGACCCTCCAGGCGAAGCATTAGGCTTTGATACAATTTGTCTGGTACCGGCTGTAGATCTGGTTTGGGCCCCAGACTATCTTC QDMLYQSLKLTNGIWILAELRIQPGNPNYT|etsgyhtcf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12130 TADA2A::LINC00910 ENSG00000276234.5::ENSG00000188825.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37411390:+ chr17:35766977-35839830:+ chr17:35771477:+ LINC00910 ENSG00000188825.16 lncRNA - - chr17:43338741-43389226:- chr17:43341459:- chr17:41416109-41466594:- chr17:41418827:- chr17:37436538,chr17:37436547,chr17:37436492,chr17:37436504,chr17:37436507,chr17:37436525,chr17:37436532,chr17:37436535,chr17:37436537 chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429 NA NA chr17:35796639,chr17:35796648,chr17:35796593,chr17:35796605,chr17:35796608,chr17:35796626,chr17:35796633,chr17:35796636,chr17:35796638 chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 5 4 171 30 ENST00000615182.5 ENST00000662750.1 downstream downstream inconsistently_clipped(2),mismatches(3) AGTCATCAAGCTTTGGTGTATGTGTTGGCCGGTTCTGAAGTCTTGAAGAAGCTCTGCTGAGGAAGACCAAAGCAGCACTCGTTGCCAATTAGGGAATGGACCGTTTGGGTTCCTTTAGCA|GAAAAGGACAACAACCTGTGTGGGTTCCCTCCCGACAACTGAAATTGCACCATAACTCCCAAGAAGAAACACTCCCAGAAACAAAAGGCAAAGACCCCTCTGAAACCAAAGAGCAAGTATCACCGCCTGACACATAAACTTCATGACCTCGACATTGAGACAAAATCTCGCCGTGTGACCTACAACACCACTCATTTAACTCCACCAACTTGGGGTCAAATAAAGGTCTTATCCCATCAACAGAAAAATCATTAAGAGAAAAATGAATCCCCAAAACGACAGGTAATATAATTCTGGCTGCC MDRLGSFS|rkgqqpvwvpsrqlklhhnsqeetlpetkgkdpsetkeqvsppdt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12133 ENSG00000285517::DLG2 ENSG00000285517.1::ENSG00000150672.19 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1194 FALSE NA FALSE NA ENSG00000285517 ENSG00000285517.1 lncRNA + + chr12:30795458-30879268:+ chr12:30796216:+ chr12:30948392-31032202:+ chr12:30949150:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84534731:- chr11:83166055-85339379:- chr11:84245774:- chr12:30796959,chr12:30796960 chr11:84863553,chr11:84863552 NA NA chr12:30949893,chr12:30949894 chr11:84574597,chr11:84574596 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Guanylate_kinase(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(98%),SH3_domain(100%) |Guanylate_kin(100%),MAGUK_N_PEST(100%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%),SH3_1(100%),SH3_2(100%) 1 5 4 345 12 ENST00000648050.1 ENST00000376104.7 downstream downstream duplicates(1),mismatches(1) AACGCGTGCCGCGCGATCTCCCCCCACCTCCAACCCCCTTTTCTCCCGGGTCCACACCGCAGTTCCCACCGCTCCGGGTGTCCTCCCCAGTGCGCCGCGATTTTTGTGTCCAAGCCCCAGAGTCCCTCTGAGACCAACCCCCAGCCAGCACAGACTTCCTGCCTTCCCAGCTCGG|AAGTATCGATATCAAGATGAGGACGCTCCACATGATCATTCCTTACCTCGACTAACCCACGAAGTAAGAGGCCCAGAACTCGTGCATGTATCAGAAAAGAACCTCTCTCAAATAGAAAATGTCCATGGATATGTCTTGCAGTCTCATATTTCTCCTCTGAAG___GCCAGTCCTGCTCCTATAATTGTCAACACAGATACTTTGGACACAATTCCTTAT___GTCAATGGGACAGAAATTGAATATGAATTTGAAGAAATTACACTGGAGAGG___GGTCAATGATTGTATCTTGCGGGTGAATaAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12136 MYH10::CFAP298-TCP10L ENSG00000133026.14::ENSG00000265590.10 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MYH10 ENSG00000133026.14 protein_coding - - chr17:8474207-8631376:- chr17:8577236:- chr17:8377525-8534694:- chr17:8480554:- CFAP298-TCP10L ENSG00000265590.10 protein_coding - - chr21:32402511-32612865:- chr21:32482225:- chr21:33774820-33985175:- chr21:33854535:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(17%)| Myosin_N(100%),Myosin_head(43%)|Gal_Lectin(59%) 2 1 1 43 5 ENST00000688902.1 unknown upstream downstream duplicates(2) GGGGTGAGTCAGGTGCTGGGAAGACAGAAAATACAAAGAAAGTTATTCAGTACCTTGCCCATGTTGCTTCTTCACATAAAGGAAGAAAGGACCATAATATTCCT|GTCCCGGAAGACCATCTGTGGCAGCTGTGGGCAGCAGAACAGAGCAGCGGCAAAAAGTGTGACCTTG...TCAGTTTCCTCACTCGGACAAAGAAACTCCTGGGAGCTGGCTCCTGGGATGATGTGATTGTTAAAAAGGCAGTGGTGTGGGCAGTGGGAACAATGCCAGCGCCCTCGCATGTGAATCAGCATTATCATCATCAGGGCACCTAACGTCAGGTAGGAAATGGTACTT GESGAGKTENTKKVIQYLAHVASSHKGRKDHNIP|vpedhlwqlwaaeqssgkkcdl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12137 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 0 3 5 386 79 ENST00000506640.3 unknown upstream downstream mismatches(2),multimappers(1) CAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGG...CCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12138 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 0 3 5 386 53 ENST00000506640.3 unknown upstream downstream duplicates(2),multimappers(1) CTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAACGTGA___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGCCACACTGGTTCCTGCTGCCTGCAGCTTCCATTCTAACAGGTGTGGGGCTGATCACGAACAAATCCACTAATGAATAAATCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12141 CCDC91::ENSG00000266535 ENSG00000123106.11::ENSG00000266535.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28484165:+ chr12:28286182-28734444:+ chr12:28637098:+ ENSG00000266535 ENSG00000266535.1 lncRNA + - chr17:33111858-33131743:+ chr17:33112590:- chr17:31438876-31458761:+ chr17:31439608:- chr12:28509421,chr12:28509420,chr12:28509419 chr17:33127442,chr17:33127443,chr17:33127444 NA NA chr12:28662354,chr12:28662353,chr12:28662352 chr17:31454460,chr17:31454461,chr17:31454462 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 0 4 449 9 ENST00000539107.5 unknown downstream downstream none AAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG___GAAACTGTTAAGGCAGCAATAATAGAAGAGCAGAAACGAAGTGAAAAGGCTGTGGAAGAGGCAGTGAAAAGAACAAGAGATGAATTGATAGAGTATATAAAAGAACAGAAAAGG|ATGGCtATGCTGTTCCCTGGGACAGAAGTGCAAG KAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKR|mamlfpgtevq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12143 DLG2::GBE1 ENSG00000150672.19::ENSG00000114480.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83786690:- chr11:83166055-85339379:- chr11:83497733:- GBE1 ENSG00000114480.13 protein_coding - - chr3:81489703-81761645:- chr3:81670953:- chr3:81538854-81810796:- chr3:81720104:- chr11:83769172,chr11:83769174 chr3:81677482,chr3:81677483 NA NA chr11:83480215,chr11:83480217 chr3:81726633,chr3:81726634 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none L27_1(100%),PDZ-associated_domain_of_NMDA_receptors(100%),PDZ_domain(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(100%)|Alpha_amylase__C-terminal_all-beta_domain(100%),Alpha_amylase__catalytic_domain(100%),Carbohydrate-binding_module_48_(Isoamylase_N-terminal_domain)(65%) L27_1(100%),MAGUK_N_PEST(100%),PDZ(100%),PDZ_6(100%),PDZ_assoc(100%)|Alpha-amylase(100%),Alpha-amylase_C(100%),CBM_48(37%) 0 1 3 3 115 ENST00000706233.1 ENST00000477426.1 upstream downstream none ATTTTTGTGTCCTTCATTCTGGCTGGTGGACCAGCAGACCTAAGTGGGGAGCTCCAGAGAGGAGACCAGATCCTATCG___GTGAATGGCATTaACCTCCGTGG...TAGCACAATATCAACCTGAAG|ATGGTTGGAATCCATTTTCGTACCCATACAAAAAACTGGATTATGGAAAATGGGAGCTGTATATCCCACCAAAGCAGAATAAATCTGTACTCGTGCCTCATGGATCCAAATTAAAG___AACTTCCAGAACTCGGG AQYQPE|dgwnpfsypykkldygkwelyippkqnksvlvphgsklknfqns NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12144 ACACA::MYO1D ENSG00000278540.5::ENSG00000176658.17 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1195 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37406262:- chr17:35441927-35766927:- chr17:35766352:- MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32659338:- chr17:30819540-31204195:- chr17:30986356:- chr17:37361482,chr17:37361482,chr17:37361482 chr17:32669815,chr17:32669816,chr17:32669817 NA NA chr17:35718425,chr17:35718425,chr17:35718425 chr17:30996833,chr17:30996834,chr17:30996835 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |IQ_calmodulin-binding_motif(60%),Unconventional_myosin_tail__actin-_and_lipid-binding(100%) |IQ(0%),Myosin_TH1(100%) 2 0 2 29 49 ENST00000616317.5 ENST00000318217.10 upstream downstream mismatches(1) GCCGGGTGCTGAGCGCCCGCCACCGCCCTCTTGGCCTTTTCCCGGTCCCCGCCGCGCGCCTGCTGCTGTCCCCGTGCCCGAGGACTGGGAGGATGGGGCTG...GGGACTGCCTGGGTTTGGGGATAACGTTCCCATCTCCACCCCTGTTGCAGCAAGGGAAATTGAGGCTGAGGGAACTGGGCCCAGGGACGGCGAGCCGTGGC...ATTGAGGCGCAATGATGAGAGGATGTGGTGGTCTACTCTGATGTCAATCTTGAGGGCTAG|GTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCGCTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTGGCCAAGCCCTCCTAAAGTTCTTCGCCG MWWSTLMSILRAr|cggapwpacgtkeprql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12148 EIPR1::KCNS3 ENSG00000032389.13::ENSG00000170745.12 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3214149:- chr2:3192696-3381601:- chr2:3217920:- KCNS3 ENSG00000170745.12 protein_coding + - chr2:17877847-18361616:+ chr2:17886605:- chr2:18059114-18542882:+ chr2:18067872:- chr2:3208771,chr2:3208776 chr2:17906975,chr2:17906977 NA NA chr2:3212542,chr2:3212547 chr2:18088242,chr2:18088244 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 1 1 170 4 ENST00000398659.8 unknown upstream downstream none TTAACACCTCAAACTGCAGAAACAGATGCCATTCGGTTTTTGGTTGGGACGCAGTCTCTTAAATATGATAATCAG___ATCCATATCATAGATTTTGACGATGA...GGGATTTACAGGAAAGCTCGAGCCAGGCTGTG|AGGAGACAAGCTCTGTCATGGAAGCTCAAGCCTGAGCCTCAGGGCTGAATCTCATCTTCGTAACATCTGAGCACCAAGGGAAGACTGGGGTCTTACATCAGTGGCCTCACGAAG___ATATCCATGCGTACAGAGGAAGCGTCTCATGCAATGAAGAAGACCAG DLQESSSQAV|rrqalswklkpepqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12155 SNRPD1::NDC80 ENSG00000167088.11::ENSG00000080986.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2125 TRUE 814 SNRPD1 ENSG00000167088.11 protein_coding + + chr18:21612314-21633524:+ chr18:21623939:+ chr18:19192275-19213485:+ chr18:19203900:+ NDC80 ENSG00000080986.13 protein_coding + + chr18:2571557-2616635:+ chr18:2606401:+ chr18:2571556-2616634:+ chr18:2606400:+ chr18:21627590,chr18:21627590 chr18:2606346,chr18:2606343 NA NA chr18:19207551,chr18:19207551 chr18:2606345,chr18:2606342 NA NA sense sense in-frame CDS/splice-site intron duplication medium none LSM_domain_(100%)| LSM(100%)| 0 2 13 2384 505 ENST00000300413.10 ENST00000261597.9 downstream upstream mismatches(1) CAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAG___...TTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGGAACAATCACAG___GTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTTGTGGATGTTGAACCTAAGGTGAAATCTAAGAAAAGGGAAGCTG|TTTTATTTCCCCAGTTGAATGCAATGATAACAGAAAGCAAGAGAAGTGTGAGAACTCTGAAAGAAGAAGTTCAAAAGCTGGATGATCTTTACCAACAAAAAATTAAG___GAAGCAGAGGAAGAGGATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAAACACAAGCACCTGCTAGAAAGTACTGTTAACCAGGGGCTCAGTGAAGCTATGAATGAA LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA|vlfpqLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKHKHLLESTVNQGLSEAMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12156 SNRPD1::NDC80 ENSG00000167088.11::ENSG00000080986.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1196 TRUE 2125 TRUE 814 SNRPD1 ENSG00000167088.11 protein_coding + + chr18:21612314-21633524:+ chr18:21623939:+ chr18:19192275-19213485:+ chr18:19203900:+ NDC80 ENSG00000080986.13 protein_coding + + chr18:2571557-2616635:+ chr18:2606415:+ chr18:2571556-2616634:+ chr18:2606414:+ chr18:21627590,chr18:21627590 chr18:2606346,chr18:2606343 NA NA chr18:19207551,chr18:19207551 chr18:2606345,chr18:2606342 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none LSM_domain_(100%)| LSM(100%)| 1 0 13 2384 505 ENST00000300413.10 ENST00000261597.9 downstream upstream mismatches(3) GTGCTGTCGGACCCAGAGGGTGACGGCGCCGCTAGGATGAAGCTCGTGAG___ATTTTTGATGAAATTGAGTCATGAAACTGTAACCATTGAATTGAAGAACGGAACACAGGTCCATGGAACAATCACAG___GTGTGGATGTCAGCATGAATACACATCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACGCTGAGTATTCGAGGAAATAACATTCGGTATTTTATTCTACCAGACAGTTTACCTCTGGATACACTACTTGTGGATG...GTGAAATCTAAGAAAAGGGAAGCTG|TTGAATGCAATGATAACAGAAAGCAAGAGAAGTGTGAGAACTCTGAAAGAAGAAGTTCAAAAGCTGGATGATCTTTACCAACAAAAAATTAAG___GAAGCAGAGGAAGAGGATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAAACACAAGCACCTGCTAGAAAGTACTGTTAACCAGG...TTGAGGAGCAGATTGCTAAAGTTGATAGAGAATATGAAGAATGCATGTCAGAAGATCTCTCGGAAAATATTAAAGAGATTAGAGATAAGTATGAGAAGAAA VKSKKREA|vecndnrkqekcenserrsskag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12157 LGMN::RIN3 ENSG00000100600.15::ENSG00000100599.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LGMN ENSG00000100600.15 protein_coding - - chr14:92703807-92748679:- chr14:92732649:- chr14:93170152-93215024:- chr14:93198994:- RIN3 ENSG00000100599.16 protein_coding + - chr14:92513781-92688994:+ chr14:92673113:- chr14:92980125-93155339:+ chr14:93139458:- chr14:92725854,chr14:92725856 chr14:92679297,chr14:92679296 NA NA chr14:93192199,chr14:93192201 chr14:93145642,chr14:93145641 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Peptidase_C13_family(7%)| Peptidase_C13(0%)| 1 3 9 673 9 ENST00000334869.9 unknown upstream downstream duplicates(1),mismappers(2) GTCGTGGGTGTTTGGTGTGAGGCTGCGAGCCGCCGCGAGTTCTCACGGTCCCGCCGGCGCCACCACCGCGGTCACTCACCGCCGCCGCCGCCACCACTGCCACCACGGTCGCCTGCCACAG___GTGTCTGCAATTGAACTCCAAGGTGCAGAATGGTTTGGAAAGTAGCTGTATTCCTCAGTGTGGCCCTGGGCATTGGTGCCGTTCCTATAGATGATCCTGAAGATGGAGGCAAGCACTGGGTGGTGATCGTGGCAGGTTCAAATGGCTGGTATAATTATAGGCACCAG|AGACAGGGTTTTGCCGTGTTGCCCAGGCTGGTCTCGAAGTCCTAGGCTCAATGATCCACCTGCCTCAGCCTCCCAAAGCGCTGGATTAAAGACGTGAGCCACCATGCCTGGCTGCTGTGATATTGATAGACCGTGATGATATTATGCTAAGTGAAAGAAGCCAGCCATGGAAGACCACATATTGTAC...GTCCAGAATAAGCAAACCCACAAACAGAAAGCAGATGAGTGGTTGCCTGGAGCTGGGCAGAAAAGAGAATGGGGAGTGATTGCTAATGGGTACCGAGTTTC MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQ|rqgfavlprlvsks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12164 TMTC1::PPFIBP1 ENSG00000133687.16::ENSG00000110841.14 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2127 TRUE 815 TMTC1 ENSG00000133687.16 protein_coding - - chr12:29500840-29784759:- chr12:29743958:- chr12:29653773-29937692:- chr12:29896891:- PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27578152:+ chr12:27676364-27848497:+ chr12:27731085:+ chr12:29664941,chr12:29664943 chr12:27577740,chr12:27577738 NA NA chr12:29817874,chr12:29817876 chr12:27730673,chr12:27730671 NA NA sense sense unknown intron 5'UTR/splice-site inversion medium none Protein_O-mannosyl-transferase_TMTC__DUF1736(3%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1736(6%)|SAM_1(100%),SAM_2(100%) 1 1 3 13 607 unknown ENST00000228425.11 upstream upstream duplicates(1) TGCAATTCCATCACTGTCACAACAGGCTGTTGAAAGAGGATCTCGGGTCTCATGACTTTCTATCAGCTCAGCAGACACCATATGGAATACTCAACCCCTGGCCTGTGTGG|TATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAAGATTTGAAGAACTGAAATAAATCAGCTTTAAACCTGCTTTTTAAAAAT___ATCTGGGTTGGAATTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation 12165 TMTC1::PPFIBP1 ENSG00000133687.16::ENSG00000110841.14 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2127 TRUE 815 TMTC1 ENSG00000133687.16 protein_coding - - chr12:29500840-29784759:- chr12:29751666:- chr12:29653773-29937692:- chr12:29904599:- PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27578152:+ chr12:27676364-27848497:+ chr12:27731085:+ chr12:29664941,chr12:29664943 chr12:27577740,chr12:27577738 NA NA chr12:29817874,chr12:29817876 chr12:27730673,chr12:27730671 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Protein_O-mannosyl-transferase_TMTC__DUF1736(3%)|SAM_domain_(Sterile_alpha_motif)(100%) DUF1736(0%)|SAM_1(100%),SAM_2(100%) 2 0 2 511 607 ENST00000256062.9 ENST00000537927.5 upstream upstream duplicates(1) CCTCTTTTCCCTTTCCAACAAGCAAGACAAGTC___GAGCAATGGGGCCCTCTGTCCACGCAGCCCACAGCAGCCCGGGAGCCCCCAGCCCTCCTCACTGCCAGGCCATCCTCACCGGGAGAATGGGAAGCAGCAGCGGTTCCCTCACAAAGGAGCTTGGGGTGGCTGCCACTCTCCACTGCCACCAGAACCCAAGAGC...GTGGTCCATGATGAG|TATAAAAGAACGTGTGGATCACTTTGCTGAGTACATCCAAGATTTGAAGAACTGAAATAAATCAGCTTTAAACCTGCTTTTTAAAAA WSMMs|ikervdhfaeyiqdlkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation 12176 GOSR2::EYA2 ENSG00000108433.17::ENSG00000064655.19 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE TRUE 1197 FALSE NA FALSE NA GOSR2 ENSG00000108433.17 protein_coding + + chr17:46923075-46975524:+ chr17:46938704:+ chr17:45000441-45052890:+ chr17:45016070:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47179798:+ chr20:45523263-45817492:+ chr20:45808446:+ chr17:46946453,chr17:46946304,chr17:46946451 chr20:47177289,chr20:47176833,chr20:47177284 NA NA chr17:45023819,chr17:45023670,chr17:45023817 chr20:45805937,chr20:45805481,chr20:45805932 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Snare_region_anchored_in_the_vesicle_membrane_C-terminus(100%)|haloacid_dehalogenase-like_hydrolase(46%) V-SNARE_C(100%)|Hydrolase(4%) 5 6 6 383 17 ENST00000638219.1 ENST00000611592.4 downstream upstream duplicates(2) TCCAGCATCGGCGCCATGCAAGGGAGCAGCAGGAGAGACAGCGAGAAGAGCTTCTGTCTCGAACCTTCACCACTAAC___...CCACCATACCAATGGACGAATCACTGCAGTTTAACTCCTCCCTCCAGAAAGTTCACAAC...CAGAGACTGACCTTGAAG___GGGACTCAGAAGAAGATCCTTGACATTGCCAACATGCTGGGCTTGTCCAACACAGTGATGCGGCTCATCGAGAAGCGGGCTTTCCAGGACAAGTACTTTATGATAG|GGTTGATAGGCACTCCCAAAAGGGAGACCTGGCTACAGCTCCGAGCTGAGCTGGAAGCTCTCACAGACCTCTGGCTGACCCACTCCCTGAAGGCACTAAACCTCATCAACTCCCG___GCCCAACTGTGTCAATGTGCTGGTCACCACCACTCAACTAATTCCTGCCCTGGCCAAAGTCCTGCTATATGGCCTGGGGTCTGTGTTTCCTATTGAGA QRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMI|gLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12177 ENSG00000262633::EYA2 ENSG00000262633.2::ENSG00000064655.19 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000262633 ENSG00000262633.2 protein_coding + + chr17:46923133-47049932:+ chr17:46938704:+ chr17:45000499-45127298:+ chr17:45016070:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47179798:+ chr20:45523263-45817492:+ chr20:45808446:+ chr17:46946453,chr17:46946304,chr17:46946451 chr20:47177289,chr20:47176833,chr20:47177284 NA NA chr17:45023819,chr17:45023670,chr17:45023817 chr20:45805937,chr20:45805481,chr20:45805932 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |haloacid_dehalogenase-like_hydrolase(46%) V-SNARE_C(100%)|Hydrolase(4%) 4 6 6 383 17 ENST00000571841.1 ENST00000611592.4 downstream upstream duplicates(2) GAAGAGCTTCTGTCTCGAACCTTCACCACTAAC___...CCACCATACCAATGGACGAATCACTGCAGTTTAACTCCTCCCTCCAGAAAGTTCACAAC...CAGAGACTGACCTTGAAG___GGGACTCAGAAGAAGATCCTTGACATTGCCAACATGCTGGGCTTGTCCAACACAGTGATGCGGCTCATCGAGAAGCGGGCTTTCCAGGACAAGTACTTTATGATAG|GGTTGATAGGCACTCCCAAAAGGGAGACCTGGCTACAGCTCCGAGCTGAGCTGGAAGCTCTCACAGACCTCTGGCTGACCCACTCCCTGAAGGCACTAAACCTCATCAACTCCCG___GCCCAACTGTGTCAATGTGCTGGTCACCACCACTCAACTAATTCCTGCCCTGGCCAAAGTCCTGCTATATGGCCTGGGGTCTGTGTTTCCTATTGAGA QRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMI|gLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12182 THADA::NRXN1 ENSG00000115970.19::ENSG00000179915.25 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43320447:- chr2:43457990-43823177:- chr2:43547586:- NRXN1 ENSG00000179915.25 protein_coding - + chr2:49918503-51225575:- chr2:50336367:+ chr2:50145641-51452713:- chr2:50563505:+ chr2:43318595,chr2:43318598 chr2:50330651,chr2:50330648 NA NA chr2:43545734,chr2:43545737 chr2:50557789,chr2:50557786 NA NA sense antisense unknown CDS intron inversion/5'-5' low none THADA/TRM732__DUF2428(100%)| DUF2428(100%)| 0 0 6 67 18 ENST00000405975.7 unknown upstream upstream none ACGAATTCAGACTTCCAGCACGAGCTGACTGACATCACTGTTTGTACCAAAGCCAAACTCTGGCTGGCCAAGAG___GCAAAATCCATGTTTGGTGACCAGAGCTGTATATATTGATATTCTCTTCCTATTGACTTGCTGCCTCAACAGATCTGCAAAGGACAACCAGCCA...|...ATCTAGTCTACAATACCATGCATCTAGAAACGACACAATTTGATTTTTAAAATCTTCAAGGCTTCATAATTAAGAGACCATAATTAAAATTAGAATACTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12185 FRMD6-AS2::FRMD6 ENSG00000258537.6::ENSG00000139926.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FRMD6-AS2 ENSG00000258537.6 lncRNA - + chr14:51379509-51651744:- chr14:51432462:+ chr14:51846227-52118462:- chr14:51899180:+ FRMD6 ENSG00000139926.16 protein_coding + + chr14:51489100-51730727:+ chr14:51689735:+ chr14:51955818-52197445:+ chr14:52156453:+ chr14:51558499 chr14:51560484 NA NA chr14:52025217 chr14:52027202 NA NA antisense sense unknown intron 5'UTR deletion/read-through/3'-3' low none |FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%) |FERM_C(100%),FERM_M(100%),FERM_N(100%) 1 0 5 11 1297 unknown ENST00000356218.8 downstream upstream duplicates(1) GTCCTGATACTAGCAATGAACCGAGTCCTGGAGTCTGGAAAAGCACTTTATATCCTCAGTGATCAG___...CTTACACTCACAGATTAACATTCCTGCTCATCGGAACAACTTTCCAAGGAGAAGGC...___GTAGAGGAATTCACAGTGGTCTGGAACACAGAATCATCAGTCATAAG|GGCGTGTGATGAGGAGGCGAGCTTGGCTTTGGAGTGCTGGGAAC...GGAATTGCCAAGGACCCAGAGCCCAGCCCTGACCACCAGAGTGCCCAAAACACAATGAACAAATTGAATTTTCATAACAACAGAGTCATGCAAGACCGCCGCAGTGTGTGCATTTTCCTTCCCAACGATGAATCTCTGAACATCATCATAAAT___GTTAAGATTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12213 NBAS::ADI1 ENSG00000151779.14::ENSG00000182551.14 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15534543:- chr2:15307040-15701464:- chr2:15674667:- ADI1 ENSG00000182551.14 protein_coding - + chr2:3497366-3519531:- chr2:3517450:+ chr2:3501137-3523302:- chr2:3521221:+ chr2:15512792,chr2:15512801 chr2:3515369,chr2:3515360 NA NA chr2:15652916,chr2:15652925 chr2:3519140,chr2:3519131 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR inversion/5'-5' high none Neuroblastoma-amplified_sequence__N_terminal(56%)| Nbas_N(25%)| 36 17 32 110 76 ENST00000281513.10 unknown upstream upstream duplicates(8),mismappers(8),mismatches(4),multimappers(1) CCGAAAGCACAGGAACTGTGAGGGTGTTTGATCTCATGGGAAGTGAACTCTTTGTCATTTCCCCG___GCATCTAGTTTTATAGGTGACTTAAGCTATGCCATTGCTGGGTTGATATTTTTAGAATATAAAGCAAGTGCACAGTGGTCTGCAGAACTCCTGGTCATCAATTACCGAGGAGAACTTAGAAGTTACCTTGTAAG___TGTTGGAACAAATCAGAGCTACCAAGAAAGTCACTGTTTCAGCTTCAGTAGTCATTATCCTCATGGAATCAACACAGCTgTTTACCACCCTGGTCACAG|CACTGATCCAGAATGGATATTAAGAAAGCATATAGGCCGGGTGCGGTGGTTCGTGTCTATAATGCCAGCACTTTGGGAGGCCGAAGTGGGTGGATCACCTGAGGTCAGCAGTTCAAGATCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCCCGGCATGGTGCTGTGCACCTTGTAATCCCAGCTACTCGGGAGGCTGACACATGAGAATGGCTTGAACTCGGGAAGATGAGGTTGCGGTGAGCCGAGATCATGCCACTGCACTCCAG ESTGTVRVFDLMGSELFVISPASSFIGDLSYAIAGLIFLEYKASAQWSAELLVINYRGELRSYLVSVGTNQSYQESHCFSFSSHYPHGINTAvYHPGHs|tdpewilrkhigrvrwfvsimpalweaevggspevsssrsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12214 PAMR1::SLC1A2 ENSG00000149090.13::ENSG00000110436.13 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1198 TRUE 2133 TRUE 816 PAMR1 ENSG00000149090.13 protein_coding - - chr11:35431823-35530300:- chr11:35525513:- chr11:35453370-35551848:- chr11:35547061:- SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35292520:- chr11:35272752-35441610:- chr11:35314067:- chr11:35504747,chr11:35504756 chr11:35294848,chr11:35294854 NA NA chr11:35526295,chr11:35526304 chr11:35316395,chr11:35316401 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Sodium:dicarboxylate_symporter_family(46%) |SDF(51%) 3 39 13 87 55 ENST00000615849.4 ENST00000278379.9 upstream downstream duplicates(3),mismappers(1),mismatches(3) GCGAGCTGAAACCCGAGCTCCCGCTCAGCTGGGGCTCGGGGAGGTCCCTGTAAAACCCGCCTGCCCCCGGCCTCCCTGGGTCCCTCCTCTCCCTCCCCAGTAGACGCTCGGGCACCAGCCGCGGCAAGGATGGAGCTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGAG|GTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGATCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGGGCACCGCTTCCAG___TGCTGGAACTTTGCCTGTCACCTTTCGTTGC MELGCWTQLGLTFLQLLLISSLPR|gtlpwvspa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12215 PAMR1::SLC1A2 ENSG00000149090.13::ENSG00000110436.13 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1199 TRUE 2133 TRUE 816 PAMR1 ENSG00000149090.13 protein_coding - - chr11:35431823-35530300:- chr11:35525513:- chr11:35453370-35551848:- chr11:35547061:- SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35286951:- chr11:35272752-35441610:- chr11:35308498:- chr11:35504747,chr11:35504756 chr11:35294848,chr11:35294854 NA NA chr11:35526295,chr11:35526304 chr11:35316395,chr11:35316401 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Sodium:dicarboxylate_symporter_family(29%) |SDF(41%) 6 8 8 87 48 ENST00000615849.4 ENST00000278379.9 upstream downstream duplicates(1),mismatches(2) CCGAGCTCCCGCTCAGCTGGGGCTCGGGGAGGTCCCTGTAAAACCCGCCTGCCCCCGGCCTCCCTGGGTCCCTCCTCTCCCTCCCCAGTAGACGCTCGGGCACCAGCCGCGGCAAGGATGGAGCTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGAG|TGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAG___CCTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTC...GCCTGCCAACA...___GGACAGGATGAGAACTTCAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGG MELGCWTQLGLTFLQLLLISSLPR|vlelclspfvawkkiwglisv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12216 PAMR1::SLC1A2 ENSG00000149090.13::ENSG00000110436.13 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2133 TRUE 816 PAMR1 ENSG00000149090.13 protein_coding - - chr11:35431823-35530300:- chr11:35513371:- chr11:35453370-35551848:- chr11:35534919:- SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35292520:- chr11:35272752-35441610:- chr11:35314067:- chr11:35504747,chr11:35504756 chr11:35294848,chr11:35294854 NA NA chr11:35526295,chr11:35526304 chr11:35316395,chr11:35316401 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Sodium:dicarboxylate_symporter_family(46%) |SDF(51%) 2 0 20 4 55 ENST00000527605.5 ENST00000278379.9 upstream downstream duplicates(2),mismatches(3) CTGGGTTGCTGGACGCAGTTGGGGCTCACTTTTCTTCAGCTCCTTCTCATCTCGTCCTTGCCAAGAG___AATGATGAACGACATACCTGAGAGCCAGACCAGCATGATGGTTAATGCTCTCTGACTCTGGAAACAGCCTACTTGGATTTGAATCCTGTCTCTGCTACTTACTACTT|GTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGATCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGGGCACCGCTTCCAG___TGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAgGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12222 GTPBP3::ANO8 ENSG00000130299.17::ENSG00000074855.11 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GTPBP3 ENSG00000130299.17 protein_coding + + chr19:17334920-17342731:+ chr19:17339599:+ chr19:17445729-17453540:+ chr19:17450408:+ ANO8 ENSG00000074855.11 protein_coding - + chr19:17323223-17334855:- chr19:17332272:+ chr19:17434032-17445664:- chr19:17443081:+ chr19:17339761 chr19:17331957 NA NA chr19:17450570 chr19:17442766 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none 50S_ribosome-binding_GTPase(59%),GTP-binding_protein_TrmE_N-terminus(100%),MnmE_helical_domain(54%)| MMR_HSR1(19%),MnmE_helical(32%),TrmE_N(100%)| 1 2 2 298 44 ENST00000361619.9 unknown downstream upstream mismappers(3) CCTATATCGATTTCGGCGAGGATGACAACCTGGAGGAGGGGGTCCTGGAGCAAG___CCGACATCGAAGTACGGGCACTGCAGGTGGCCCTGGGTGCACATCTACGAGATGCCAGGCGCGGG?AGAGGC?CCGCTCAGGGGcGCACGTAGTGGTCACTGGACCCCCCAATGCGGGCAAGAGCAGCCTAGTGAACCTGCTCA___GTCGGAAGCCTGTGTCCATCGTGTCCCCGGAGCCAGGGACCACCCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTCCTGTGCTGCTGAGCGACACGGCTGGGTTGCGGGAGGGCGTGGGGCCCGTGGAGCAGGAGGGCGTGCGGCGCGCCCGGGAGAG|GGTCTCGCTCTGTCACCCAGGCTGGACAGAATGCAGTGGCGCTACCATGGCTCACTGCAACCTCGAACTCCTGGGCTCAAGTGATGCTACCGCCTGGACCTCCCAAAGTACTGGGAGCCACTGCGCCTGTTCCCCTGCTTTAAATAAAGCTCAGTTTGTGGACCCG YIDFGEDDNLEEGVLEQADIEVRALQVALGAHLRDARRG?R?RSGaHVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAREr|vslchpgwtecsgatmahcnlellgssdatawtsqstgshcacspalnkaqfvd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12244 EXPH5::ENSG00000255292 ENSG00000110723.12::ENSG00000255292.9 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXPH5 ENSG00000110723.12 protein_coding - - chr11:108505435-108593768:- chr11:108593418:- chr11:108376162-108464495:- chr11:108464145:- ENSG00000255292 ENSG00000255292.9 protein_coding + + chr11:112086903-112193805:+ chr11:112170419:+ chr11:111957627-112064528:+ chr11:112041142:+ chr11:108567192,chr11:108567198 chr11:112114352,chr11:112114346 NA NA chr11:108437919,chr11:108437925 chr11:111985075,chr11:111985069 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none |CybS(0%),RPE65(100%),TEX12(100%) 2 0 0 27 8 ENST00000265843.9 ENST00000532699.1 upstream upstream none CGTGAAACTGGTCTTGTACAGGTTGAAAAATGCCTTCCTAACAGGAGGCGCCAAGGAGCTTAAGTGgAACTCACACACAGTAAAGAAAATGACGAAAGTTC...TAAATGACGAAGAGGCCgGGAAGATCCTTCAGGTGCTGGAAAGGAATGAGGAGTTACAGAGGGCCGAGAAGGACAGGATCAG|TCTCCAGTGCCAGATAGTCCACAGCTGTCCTCTCTTGGAAAATCAGATTCATCTTTCTCTGAAATTTCC NDEEAgKILQVLERNEELQRAEKDRIs|LQCQIVHSCPLLENQIHLSLKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12254 PLPBP::ENSG00000254447 ENSG00000147471.12::ENSG00000254447.3 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2141 TRUE 817 PLPBP ENSG00000147471.12 protein_coding + + chr8:37762595-37779768:+ chr8:37762758:+ chr8:37620113-37637286:+ chr8:37620276:+ ENSG00000254447 ENSG00000254447.3 lncRNA - - chr11:67735600-67784229:- chr11:67736561:- chr11:67503071-67551700:- chr11:67504032:- chr8:37763910,chr8:37763908,chr8:37764167 chr11:67742115,chr11:67742116,chr11:67742012 NA NA chr8:37621428,chr8:37621426,chr8:37621685 chr11:67509586,chr11:67509587,chr11:67509483 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Alanine_racemase__N-terminal_domain(3%)| Ala_racemase_N(0%)| 12 56 45 2566 121 ENST00000523358.5 ENST00000642027.2 downstream downstream duplicates(4),low_entropy(5),mismatches(7) GCCGGGGGCCTGGGGCTCGGCGTCGGTCCCCGGGGGATGTGGAGAGCTGGCAGCATGTCGGCCGAGCTGGGAGTCGGGTGCGCATTGCGGGCGGTGAACGAGCGCGTGCAGCAGGCTGTGGCGCGGCGGCCGCGG|GCAAAAGGTGTCCAAACTATACAGATCCACATAGTCTAACAGATGTCTCTATATTCCTCCTCCTCAAACTCTCAGAGGATCCAGAACTGCAGCCGGTCGTCGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACAGTGCTGGGGAACCTGCTCATCATCCTGGCCGTCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCATCCTTTCCAACCTGCCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATCCAGTCTCACA MWRAGSMSAELGVGCALRAVNERVQQAVARRPR|akgvqtiqihiv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12255 PLPBP::ENSG00000254447 ENSG00000147471.12::ENSG00000254447.3 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2141 TRUE 817 PLPBP ENSG00000147471.12 protein_coding + + chr8:37762595-37779768:+ chr8:37762700:+ chr8:37620113-37637286:+ chr8:37620218:+ ENSG00000254447 ENSG00000254447.3 lncRNA - - chr11:67735600-67784229:- chr11:67736561:- chr11:67503071-67551700:- chr11:67504032:- chr8:37763910,chr8:37763908,chr8:37764167 chr11:67742115,chr11:67742116,chr11:67742012 NA NA chr8:37621428,chr8:37621426,chr8:37621685 chr11:67509586,chr11:67509587,chr11:67509483 NA NA sense sense unknown CDS/splice-site exon/splice-site translocation low none none none 0 1 0 1684 121 ENST00000523187.5 ENST00000642027.2 downstream downstream none CGGGGGATGTGGAGAGCTGGCAGCATGTCGGCCGAGCTGGGAGTCGG|GCAAAAGGTGTCCAAACTATACAGATCCACATAGTCTAACAGATGTCTCTATAT...ATGTGCCTGGTCACAGTGCTGGGGAACCTGCTCATCATCCTGGCCGTCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCATCCTTTCCAACCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12260 DMTN::ACTE1P ENSG00000158856.19::ENSG00000172900.12 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22067682:+ chr8:21906506-21940038:+ chr8:21925193:+ ACTE1P ENSG00000172900.12 transcribed_unitary_pseudogene - - chr11:71382601-71423423:- chr11:71393958:- chr11:71093647-71134469:- chr11:71105004:- chr8:22068118,chr8:22068117,chr8:22068118,chr8:22068117 chr11:71395009,chr11:71395009,chr11:71395005,chr11:71395010 NA NA chr8:21925629,chr8:21925628,chr8:21925629,chr8:21925628 chr11:71106055,chr11:71106055,chr11:71106051,chr11:71106056 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Putative_adherens-junction_anchoring_region_of_AbLIM(21%)| AbLIM_anchor(4%)| 7 8 23 53 29 ENST00000443491.6 ENST00000460880.1 downstream downstream duplicates(2),low_entropy(1),mismatches(1) CGGCGGGCGAGCTCCGTGCTGCATGGAACGGCTGCAGAAG___GCCAAGATGGACAATCAGGTGCTGGGCTACAAGGACCTGGCTGCCATCCCCAAGGACAAGGCCATCCTGGACATCGAGCGGCCCGACCTCATGATCTACGAGCCTCACTTCACTTATTCCCTCCTGGAACACGTGGAGCTGCCTCGCAGCCGCGAG|GCATGACTGTTGAATCTGGAGAAGGAATGACACACTTCGTGCCCATCGCTGATGGCTGTCCTTTGCATCAGTCAACCTTCCAGGTGGACATAGCGGGCCAGGACCTAACCTCGTACCTCCTGCAACTGTTGAAAGACAATGTGCAATTATTGGTGGGCACAG___GGGATCGAGAGTACATCCGGGACATGAAGGAGAAATGCTGCTATGTGGCTTTGGACTTTGACAAGGAAAAGATGAAAACTGATTCACCT MERLQKAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRE|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12261 RNF123::RBMS3 ENSG00000164068.16::ENSG00000144642.22 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF123 ENSG00000164068.16 protein_coding + + chr3:49689538-49721529:+ chr3:49714174:+ chr3:49726971-49758962:+ chr3:49751607:+ RBMS3 ENSG00000144642.22 protein_coding + - chr3:28574791-30010391:+ chr3:29915707:- chr3:28616282-30051882:+ chr3:29957198:- chr3:49714844,chr3:49714842 chr3:29916535,chr3:29916537 NA NA chr3:49752277,chr3:49752275 chr3:29958026,chr3:29958028 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none SPRY_domain(100%)| SPRY(100%)| 6 7 13 109 22 ENST00000327697.11 unknown downstream downstream duplicates(1) GCGTATCGCCATGGTGAGGAACCTCCTGGCGCCCTATGAGCAGCGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGG___GGCTGTGGCTTCGGGTACCGCTATACACGGCTGCCACATCTGCTGAAAACCAAACTTGAGGAtGCCAATTTGCCCAGCCTCCAGA|GTAATATTCCACTAAAAGGACCTCCTGCTGATTGTCTGTCAATGAATCCTCACTCTTGACAATTTCGGTTTGAACTTTGTATTTAGAAAAAGACATGAAGGAAAGTTAAATCTTTGAGCCACAATCCAATTTGTAAACATTTGTCTGGAGATACGGGCATACTGTTACGGATTCTTAAGAAACTTACTTTAAACTTCTGCTCTTTAAAATGTCAAATAGAACAGAGAAGAAAACACCAACAAAAAG RIAMVRNLLAPYEQRPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKLEDANLPSLQ|sniplkgppadclsmnphs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12265 EFR3A::ANK1 ENSG00000132294.15::ENSG00000029534.22 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1203 TRUE 2144 TRUE 818 EFR3A ENSG00000132294.15 protein_coding + + chr8:131904093-132013642:+ chr8:131950090:+ chr8:132916340-133025889:+ chr8:132962337:+ ANK1 ENSG00000029534.22 protein_coding - - chr8:41653220-41896741:- chr8:41758137:- chr8:41510739-41754259:- chr8:41615655:- chr8:131951614,chr8:131951615 chr8:41797538,chr8:41797537 NA NA chr8:132963861,chr8:132963862 chr8:41655056,chr8:41655055 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Death_domain(100%),UPA_domain(100%),ZU5_domain(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Death(100%),UPA_2(100%),ZU5(100%) 1 4 4 41 170 ENST00000254624.10 ENST00000265709.14 downstream downstream none CAAAGCATTAAGCCATTTGTAGAAAGCTTTCTTCATATGGTGGCAAAGCTGCTGGAATCGGGGGAACCAAAGCTTCAAGTTCTTGGAACAAATTCT___TTTGTCAAATTTGCAAATATTGAAGAAGACACACCATCCTATCACAGACGTTATGACTTTTTTGTGTCTCGATTCAGTGCCATGTGCCATTCCTGTCATAGTGATCCAGAAATACGAACAGA|GCCGATGCTGCTACCAGCTTTCTGAGAGCAGCAAGATCAGGTAACTTGGACAAAGCTTTGGATCACCTGCGGAATGGGGTAGATATTAACACCTGTAACCAG___AAT...ATCTGGCTTCTAAGGAAGGCCATGTGAAAATGGTGGTTGAACTTCTGCACAAAGAAATCATTCTAGAAACGACAACCAAG___AAGGGGAACACGGCCCTGCACATCGCTGCTCTAGCCGGGCAGGATGAGGTGGTCCGGGAGCTTGTCAAC QSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTe|pmllpaf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-486-1 chr8:41660441-41660508:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ankyrin 1 2 CCRCC epithelial missense 12266 EFR3A::ANK1 ENSG00000132294.15::ENSG00000029534.22 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2144 TRUE 818 EFR3A ENSG00000132294.15 protein_coding + + chr8:131904093-132013642:+ chr8:131946633:+ chr8:132916340-133025889:+ chr8:132958880:+ ANK1 ENSG00000029534.22 protein_coding - - chr8:41653220-41896741:- chr8:41758137:- chr8:41510739-41754259:- chr8:41615655:- chr8:131951614,chr8:131951615 chr8:41797538,chr8:41797537 NA NA chr8:132963861,chr8:132963862 chr8:41655056,chr8:41655055 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Death_domain(100%),UPA_domain(100%),ZU5_domain(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Death(100%),UPA_2(100%),ZU5(100%) 2 0 0 48 170 ENST00000254624.10 ENST00000265709.14 downstream downstream none ATCGAATTGGTTCTTACCTGGCAGAAAGGTTGAGCAGGGATGTTGTCAGACATCGTTCTGG___GTATGTTTTGATTGCTATGGAGGCACTGGACCAACTTCTCATGGCTTGCCATTCTCAAAGCATTAAGCCATTTGTAGAAAGCTTTCTTCATATGGTGGCAAAGCTGCTGGAATCGGGGGAACCAAAGCTTCAAGTTCTTGGAACAAATTCT|GCCGATGCTGCTACCAGCTTTCTGAGAGCAGCAAGATCAGGTAACTTGGACAAAGCTTTGGATCACCTGCGG RIGSYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNS|ADAATSFLRAARSGNLDKALDHL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-486-1 chr8:41660441-41660508:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ankyrin 1 2 CCRCC epithelial missense 12296 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1204 TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67528914:+ chr16:67552321-67580691:+ chr16:67562817:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through high none |Nuclear_transport_factor_2_(NTF2)_domain(100%) |NTF2(100%) 30 300 12 658 1782 ENST00000379312.7 ENST00000219169.9 downstream upstream duplicates(57),low_entropy(2),mismatches(8) AGCGGCAGCTGCGGCGCGACCAGGCCGGGCACCTCCGAGCGCAAGGACAGCGCGAGGTCCGCGCAGCCCAGCGCAGCCAT|GTCTCCGTGAGGCCGGGTGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCAATTTAC___ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCT___AGCCTTCCGTTCCAGAAAATTCAGCACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12297 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67538550:+ chr16:67552321-67580691:+ chr16:67572453:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none Filopodia_upregulated__FAM65(5%)|Nuclear_transport_factor_2_(NTF2)_domain(100%) PL48(3%)|NTF2(100%) 59 39 62 209 1782 ENST00000379312.7 ENST00000219169.9 downstream upstream duplicates(22),mismatches(4),multimappers(1) GGCGCGACCAGGCCGGGCACCTCCGAGCGCAAGGACAGCGCGAGGTCCGCGCAGCCCAGCGCAGCCAT___GGAGCCCCGCGCGGACTCACTCTATGATGTCCCTGTCGGTGCGGCCGCAGCGCCGTCTGCTCAGCGCCCGGGTCAATAGGAGCCAGTCCTTCGCAGGCGTCCTCGGCAGCCACGAGCGGGGGCCCAG|GTCTCCGTGAGGCCGGGTGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCAATTTAC___ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCT___AGCCTTCCGTTCCAGAAAATTCAGC MMSLSVRPQRRLLSARVNRSQSFAGVLGSHERGPr|sp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12298 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67529859:+ chr16:67552321-67580691:+ chr16:67563762:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |Nuclear_transport_factor_2_(NTF2)_domain(100%) |NTF2(100%) 2 0 15 17 1782 ENST00000566907.1 ENST00000219169.9 downstream upstream duplicates(4),mismatches(2) ATTCAGTCCAGATTCAGCACCCTTTGTCCTCCTCTCCAGGGTGAGCCCTGAGTCCGGCCTCCCCTACAGACCCTCCCCAGCCAGTTCTAACGTGTGTCCAG...AATACTTGTGCCCTGGCTGCAGTCTGCGGGGCCGCGCCCTGGGCCTGCCGCATTCGGCCAACGCACAGCATCTGAGGAGGGTTATGACCATCTGGCAGATGCAGAAACAGGCCCAGAGAG|GTCTCCGTGAGGCCGGGTGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCAATTTAC___ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTC MTIWQMQKQAQR|glreag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12299 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67530087:+ chr16:67552321-67580691:+ chr16:67563990:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through medium none |Nuclear_transport_factor_2_(NTF2)_domain(100%) |NTF2(100%) 1 1 15 10 1782 ENST00000566920.5 ENST00000219169.9 downstream upstream duplicates(4),mismatches(2) CAACGCACAGCATCTGAGGAGGGTTATGACCATCTGGCAGATGCAGAAACAGGCCCAGAGAGGTTAGTAGTATTCTCAAGGTCACACAGCTGGTTTGGGAG...GCTCCTTCTTCCACCGCCCTCTCCGGCTTGGGTCCTGTGACTGCGGCGGGAGAGAGGAGCAAG|GTCTCCGTGAGGCCGGGTGACGCTCCAGAATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAATGATAGAACCCAACTAGGCGCAATTTAC___ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12300 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67538550:+ chr16:67552321-67580691:+ chr16:67572453:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67868340:+ chr16:67880785-67906470:+ chr16:67902243:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Filopodia_upregulated__FAM65(5%)|Nuclear_transport_factor_2_(NTF2)_domain(78%) PL48(3%)|NTF2(44%) 1 0 22 209 1526 ENST00000379312.7 ENST00000219169.9 downstream upstream duplicates(1) GCGCGACCAGGCCGGGCACCTCCGAGCGCAAGGACAGCGCGAGGTCCGCGCAGCCCAGCGCAGCCAT___GGAGCCCCGCGCGGACTCACTCTATGATGTCCCTGTCGGTGCGGCCGCAGCGCCGTCTGCTCAGCGCCCGGGTCAATAGGAGCCAGTCCTTCGCAGGCGTCCTCGGCAGCC...GAGCGGGGGCCCAG|ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCT___AGCCTTCCGTTCCAGAAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCACTCCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTTAAG___GCGGA ERGPr|ltrhalrgkdnssrgklplwrsclafrsrkfstasprrtisplqiaassawlwaslrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12301 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67528914:+ chr16:67552321-67580691:+ chr16:67562817:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67868340:+ chr16:67880785-67906470:+ chr16:67902243:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Nuclear_transport_factor_2_(NTF2)_domain(78%) |NTF2(44%) 1 1 4 658 1526 ENST00000379312.7 ENST00000219169.9 downstream upstream none GCCGGCGCCTGCGGCGGCGACAGCGGCAGCTGCGGCGCGACCAGGCCGGGCACCTCCGAGCGCAAGGACAGCGCGAGGTCCGCGCAGCCCAGCGCAGCCAT|ATTGACGCGTCATGCCTTACGTGGGAAGGACAACAGTTCCAGGGGAAAGCTGCCATTGTGGAGAAGTTGTCT___AGCCTTCCGTTCCAGAAAATTCAGCACAGCATCACCGCGCAGGACCATCAGCCCACTCCAGATAGCTGCATCATCAGCATGGTTGTGGGCCAGCTTAAG___GCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12304 STAU1::ENSG00000289904 ENSG00000124214.21::ENSG00000289904.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2150 FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49135833:- chr20:47729876-47804904:- chr20:47752370:- ENSG00000289904 ENSG00000289904.1 lncRNA - - chr13:114265096-114268442:- chr13:114265359:- chr13:115030571-115033917:- chr13:115030834:- chr20:49133949,chr20:49133956 chr13:114267915,chr13:114267919 NA NA chr20:47750486,chr20:47750493 chr13:115033390,chr13:115033394 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Double-stranded_RNA_binding_motif(39%)| dsrm(16%)| 3 4 4 619 203 ENST00000371828.7 ENST00000701525.1 upstream downstream none CTGCGAAgCACGATGCTGCTGCCAAAGCGTTGAGGATCCTGCAGAATGAGCCCCTGCCAGAGAGGCTGGAG___GTGAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCTGTGAATTTCGAG|CACGAATGGTTAGAAAGATGAACTTGGAACCTCAGACGAGAATATGAGAAACATAAACAGAGACATATGACAACCTAAAAAATGGAGTACAATACCAATAAGAATAACGATTATCTTACCAATATAAGCTTCAGAATCACCAATGTACATTTCGATGCAATGACCAAGCATTGTAACAGAAAATGTATCATCTCGCCTAAGACCAAGGGCCTGCCATAAAAGATTC AKHDAAAKALRILQNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFE|hewler* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12305 CREBBP::USP7 ENSG00000005339.15::ENSG00000187555.17 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2151 TRUE 820 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930397:- chr16:8985954-9069185:- chr16:9024254:- chr16:3809350,chr16:3809356 chr16:8949103,chr16:8949106 NA NA chr16:3859351,chr16:3859357 chr16:9042960,chr16:9042963 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none |ICP0-binding_domain_of_Ubiquitin-specific_protease_7(100%),MATH_domain(100%),Ubiquitin-specific_protease_C-terminal(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) |MATH(100%),UCH(100%),UCH_1(100%),USP7_C2(100%),USP7_ICP0_bdg(100%) 60 67 48 368 289 ENST00000262367.10 ENST00000673704.1 upstream downstream duplicates(10),low_entropy(1),mismatches(9),multimappers(3) CCGGTTTCTCGGCGAATGACAGCACAG___ATGGGAATAACTGGGAACACAAGTCCATTTGGACAGCCCTTTAGTCAAGCTGGAGGGCAGCCAATGGGAGCCACTGGAGTGAACCCCCAGTTAGCCAGCAAACAGAGCATGGTCAACAGTTTGCCCACCTTCCCTACAGATATCAAGAATACTTCAGTCACCAACGTGCCAAATATG|CGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGGAGGAGGACATGGAGGATG___ACACCAGTTGGCGCTCCGAGGCAACCTTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 12306 CREBBP::USP7 ENSG00000005339.15::ENSG00000187555.17 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2151 TRUE 820 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3879832:- chr16:3775055-3930714:- chr16:3929833:- USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930397:- chr16:8985954-9069185:- chr16:9024254:- chr16:3809350,chr16:3809356 chr16:8949103,chr16:8949106 NA NA chr16:3859351,chr16:3859357 chr16:9042960,chr16:9042963 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |ICP0-binding_domain_of_Ubiquitin-specific_protease_7(100%),MATH_domain(100%),Ubiquitin-specific_protease_C-terminal(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) |MATH(100%),UCH(100%),UCH_1(100%),USP7_C2(100%),USP7_ICP0_bdg(100%) 0 2 2 220 289 ENST00000262367.10 ENST00000673704.1 upstream downstream duplicates(1) GGGCCCCCGACCCCCGTCCGGGCCCTCGCCGGCCCGGCCGCCCGTGCCCGGGGCTGTTTTCGCGAGCAGGTGAAAATGGCTGAGAACTTGCTGGACGGACCGCCCAACCCCAAAAGAGCCAAACTCAGCTCGCCCGGTTTCTCGGCGAATGACAGCACAG|CGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGGAGGAGGACATGGAGG MAENLLDGPPNPKRAKLSSPGFSANDST|aGDTDDPPRITQNPVINGNVALSDGHNTAEEDME NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 12307 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1205 TRUE 2152 TRUE 821 DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119071656:+ chr5:118373467-118584833:+ chr5:118407351:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ chr5:119078801,chr5:119078799 chr5:119270776,chr5:119270771 NA NA chr5:118414496,chr5:118414494 chr5:118606471,chr5:118606466 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Domain_of_unknown_function_(DUF758)_(100%) |DUF758(100%) 40 46 35 125 132 ENST00000539542.6 ENST00000274456.6 downstream upstream duplicates(9),mismatches(7) CGGCCTTCCTGGCCG...TCGCTGCTTCTGCCGTCGCCACCGAAGAGCGGCCGCCGCCCCTGAGGGAAGGAGGGAGGGAAGCAGCCGCTGACCCGTGGCATGAGCTGGATGCGGTGTCCGTTGCAGGACTAGGGCGCCGACATGAACCTGCACCAGGTGCTGACCGGGGCTGTGAACCCTGGCGACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTTCACG|TGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAG MNLHQVLTGAVNPGDHCFSVGSIGDQRFT|wpqmslipktwpfrhkrrswvkwcpnpsppp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12308 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2152 TRUE 821 DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119071656:+ chr5:118373467-118584833:+ chr5:118407351:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119316185:+ chr5:118604387-118735383:+ chr5:118651880:+ chr5:119078801,chr5:119078799 chr5:119270776,chr5:119270771 NA NA chr5:118414496,chr5:118414494 chr5:118606471,chr5:118606466 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Domain_of_unknown_function_(DUF758)_(100%) |DUF758(100%) 0 1 35 125 1 ENST00000539542.6 ENST00000388882.5 downstream upstream duplicates(1),mismatches(6) GGCCGCAGGGATCCAGAGGCGCGTA___...TGTGTGGACAGCGCGGCCTTCCTGGCCG___...CGGCCGCCGCCCCTGAGGGAAGGAGGGAGGGAAGCAGCCGCTGACCCGTGGCA...GAGCTGGATGCGGTGTCCGTTGCAGGACTAGGGCGCCGACATGAACCTGCACCAGGTGCTGACCGGGGCTGTGAACCCTGGCGACCACTGCTTCTCCGTGGGCAGCATTGGCGACCAGCGCTTCACG|GATCTTCCTGTaTCACCCAGGCTGAAGTGCAGTGGTGAGATCATAGCTCACTGCAGCCTCTAACTCCTGGGCTCAAGCGATCCTCCCACCTCAGTCTCCTGAGTAGCTGGAACCACA MNLHQVLTGAVNPGDHCFSVGSIGDQRFT|dlpvsprlkcsgeiiahcsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12309 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2152 TRUE 821 DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119071257:+ chr5:118373467-118584833:+ chr5:118406952:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ chr5:119078801,chr5:119078799 chr5:119270776,chr5:119270771 NA NA chr5:118414496,chr5:118414494 chr5:118606471,chr5:118606466 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Domain_of_unknown_function_(DUF758)_(100%) |DUF758(100%) 0 2 0 78 132 ENST00000539542.6 ENST00000274456.6 downstream upstream mismatches(1) GGCGGGCACCGGAGCCGGGAAGGGACAGGgCAGGCGGGGAGTGCGAGCGCGTACTGCTTGCGCCACTCGGGCTGGGTCAGGAGCGGCTGCCCGAGGTCCAGAGGAAGTGTGTGGACAGCGCGGCCTTCCTGGCCG|TGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCcCAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12310 RBMS1::MARCHF7 ENSG00000153250.21::ENSG00000136536.15 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160318169:- chr2:161128662-161350318:- chr2:161174680:- MARCHF7 ENSG00000136536.15 protein_coding + - chr2:159712457-159771027:+ chr2:159739349:- chr2:160568968-160627538:+ chr2:160595860:- chr2:160315637,chr2:160315647 chr2:159739665,chr2:159739672 NA NA chr2:161172148,chr2:161172158 chr2:160596176,chr2:160596183 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(32%)| RRM_1(86%)| 33 23 53 112 106 ENST00000348849.8 unknown upstream downstream duplicates(10),mismappers(1),mismatches(10) GCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAG___ATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAG|GTTGATGCTAACAGCTGTGATGGCAGCAGCAGTTCATCTGGAGCGGCTGCCACAAAGACGCCGGCTGCAGCAGGGGAGGCGTGGCAGGGTCTGTGCGCTCCACAGAGTCAGCAACAGGTGGGAGCCCTGACCACTTCCAAGTTGGTGGGGTGGGAGCCCTGTGCTCCCTGACCCAGCTGTGGCTGTAGACTTGGGTATCCCTGTGCTCTCAGGGGCCTGAGAAGCCTCCCTTCCCGCCCCCGCCTCCTGCTCCGATTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4785 chr2:160407810-160407882:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12311 KLF10::ENSG00000283959 ENSG00000155090.15::ENSG00000283959.2 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLF10 ENSG00000155090.15 protein_coding - - chr8:102648784-102655725:- chr8:102655566:- chr8:103661012-103667953:- chr8:103667794:- ENSG00000283959 ENSG00000283959.2 lncRNA + - chr8:102656241-102687118:+ chr8:102675837:- chr8:103668469-103699346:+ chr8:103688065:- chr8:102655546,chr8:102655550 chr8:102676398,chr8:102676399 NA NA chr8:103667774,chr8:103667778 chr8:103688626,chr8:103688627 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 47 19 43 803 81 ENST00000285407.11 unknown upstream downstream duplicates(11),mismatches(2) GCGGCGGGAGCGGCGTCGAGTGTCTCCGTGCGCCCGTCTGTGGCCAAGCAGCCAGCAGCCTAGCAGCCAGTCAGCTTGCCGCCGGCGGCCAAGCAGCCAACCATGCTCAACTTCGGTGCCTCTCTCCAGCAGACTGCG|GTAAATGATGAGGAGACAACTGAACAAAGAAAAGCCCCTGAACTCCCAAACCCAGAAACATTCTTCAGCACAGGAAAGGAGAAAGCAGGCCGGGAGCAGTGGCCCACAGCTGTAATCCCAGCACTTTTGGAAGCCGAG MLNFGASLQQTA|vndeetteqrkapelpnpetffstgkekagreqwptavipallea NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12312 CNOT1::LINC02137 ENSG00000125107.19::ENSG00000260186.5 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT1 ENSG00000125107.19 protein_coding - - chr16:58519951-58629885:- chr16:58578699:- chr16:58553855-58663789:- chr16:58612603:- LINC02137 ENSG00000260186.5 lncRNA + - chr16:58421326-58462470:+ chr16:58437934:- chr16:58455230-58496374:+ chr16:58471838:- chr16:58577135,chr16:58577148 chr16:58446719,chr16:58446720 NA NA chr16:58611039,chr16:58611052 chr16:58480623,chr16:58480624 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none CCR4-NOT_transcription_complex_subunit_1_HEAT_repeat(18%)| CNOT1_HEAT(2%)| 21 27 56 334 166 ENST00000317147.10 unknown upstream downstream duplicates(8),low_entropy(4),mismappers(16),mismatches(5) CTTGGATTTGATTGAATCTCTGCTGAGGCTTGCAGAGGTTGGGCAGTATGAGCAAGTCAAACAGCTCTTCAGCTTCCCTATCAAACACTGTCCAGACATGCTGGTATTGGCCTTACTACAAATTAACACCTCTTGGCATACCTTGCGCCATGAACTTATCTCCACTCTGATGCCAATTTTCCTTGGAAACCATCCTAACTCAGCTATTATTTTGCACTATGCATGGCATGGGCAG|AGTCTTCCTCTGTCACCCAGGCTGGAGTGCAATGGCATGGTCACAGCTTGCTGCAGCCTTGACCTCCTGAGCTCAAGTGAGCCTCCCACCCCAGCTTCCCAAATGGCTGGGACTACAGGTA...___GTAGACGCATATATGCTCCATGTTTGAA...___GTGAGG LDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQ|slplsprlecngmvtaccsldllsssepptpasqmagttg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12317 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1206 TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 18 35 21 187 141 ENST00000696786.1 ENST00000220592.10 upstream downstream duplicates(5),inconsistently_clipped(2),low_entropy(2),mismatches(1),multimappers(1) CCCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGGAGAGTTAACAG___GGAAATCGTGGAACACATGGTCCAGCACTTTAAAACACAGATCTTTGGGGATCGGAAGCCCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12318 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141000880:- chr8:141667999-142012315:- chr8:142010979:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 0 4 24 18 141 ENST00000523797.1 ENST00000220592.10 upstream downstream duplicates(3),mismatches(1),multimappers(1) CCCGGGGCGGATGCGGCGGAGACCGGCCCCTCCCGCGCCCCCGGCCCcGGTTCTGGGAGGAGGGGAGGCCGGTGGCCGTGAGGAGGTTGGGGGCCCTCGCGGAGGCCGAGAGGCTTAAGGAG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGGAGAGTTAACAG___GGAAATCGTGGAACACATGGTCCAGCACTTTAAAACACAGATCTTTGGGGATCGGAAGCCCGTGTTTGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12319 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140572932:- chr8:141530255-141645732:- chr8:141583031:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(72%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(45%),PAZ(100%),Piwi(100%) 1 1 7 187 194 ENST00000696786.1 ENST00000220592.10 upstream downstream duplicates(1),multimappers(1) CCGGTCCCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA|GGAAATCGTGGAACACATGGTCCAGCACTTTAAAACACAGATCTTTGGGGATCGGAAGCCCGTGTTTGACGGCAGGAAGAATCTATACACAGCCATGCCCCTTCCGATTGGGAGGGACAAG___GTGGAGCTGGAGGTCACGCTGCCAGGAGAAGGCAAGGATCGCATCTTCAAGGTGTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12320 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141000880:- chr8:141667999-142012315:- chr8:142010979:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140562634:- chr8:141530255-141645732:- chr8:141572733:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(41%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(0%),PAZ(100%),Piwi(100%) 0 1 5 18 175 ENST00000523797.1 ENST00000220592.10 upstream downstream duplicates(1),multimappers(1) GCGGATGCGGCGGAGACCGGCCCCTCCCGCGCCCCCGGCCCcGGTTCTGGGAGGAGGGGAGGCCGGTGGCCGTGAGGAGGTTGGGGGCCCTCGCGGAGGCCGAGAGGCTTAAGGAG|GTGGAGCTGGAGGTCACGCTGCCAGGAGAAGGCAAGGATCGCATCTTCAAGGTGTCCATCAAGTGGGTGTCCTGCGTGAGCTTGCAGGCGTTACACGATGCACTTTCAGGGCGGCTGCCCAGCGTCCCTTTTGAGACGATCCAGGCCCTGGACGTGGTCATGAGGCACTTGCCATCCATGAG___GTACACCCCCGTGGGCCGCTCCTTCTTCACCGCGTCCGAAGGCTGCTCTAACCCTCTTGGCGGGGGCCGAGAAGTGTGGTTTGGCTTCCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12321 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1207 TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140948666:- chr8:141667999-142012315:- chr8:141958765:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 4 3 28 47 141 ENST00000520045.5 ENST00000220592.10 upstream downstream duplicates(4),mismatches(1),multimappers(1) CCCGCGCCGCCGCCGCCGCCGCCGGTCCCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA___ATCCATGGTTGGTTGAATCTGGATGTGGAACCCGCTGACGTGGATGGCTGACTGTATT|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGGAGAGTTAACAG___GGAAATCGTGGAACACATGGTCCAGCACTTTAAAACACAGATCTTTGGGGATCGGAAGCCCGTGTTTGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12322 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140984078:- chr8:141667999-142012315:- chr8:141994177:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 0 1 25 15 141 ENST00000521059.5 ENST00000220592.10 upstream downstream duplicates(4),mismatches(1),multimappers(1) GGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA___AGTCTTGCTGTGTCgCCCAGGCTGCCAGGCTGG...TGGAGTGGCATGATCTCGGCTGACTGCAACCTCTGCCTCCCAG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGGAGAGTTAACAG___GGAAATCGTGGAACACATGGTCCAGCACTTTAAAACACAGATCTTTGGGGATCGGAAGCCCGTGTTTGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12323 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141002014:- chr8:141667999-142012315:- chr8:142012113:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) |ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 1 0 0 7 141 ENST00000517453.5 ENST00000220592.10 upstream downstream none GCTCACACCGCGGAAGCCCGGGTCGGTGTCGGGGCGAGCCTTCCCTCCTTTTCCTGGAGCCCGTCTCAG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12324 ADAM17::ASAP2 ENSG00000151694.15::ENSG00000151693.11 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ADAM17 ENSG00000151694.15 protein_coding - - chr2:9488486-9556732:- chr2:9497114:- chr2:9628615-9696861:- chr2:9637243:- ASAP2 ENSG00000151693.11 protein_coding + - chr2:9206765-9405683:+ chr2:9397393:- chr2:9346894-9545812:+ chr2:9537522:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Disintegrin(100%),Membrane-proximal_domain__switch__for_ADAM17(23%),Metallo-peptidase_family_M12(100%),Reprolysin_family_propeptide(100%)| ADAM17_MPD(1%),Disintegrin(100%),Pep_M12B_propep(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_4(100%),Reprolysin_5(100%)| 14 21 39 544 167 ENST00000310823.8 unknown upstream downstream duplicates(1),low_entropy(4),mismappers(1),mismatches(7) GAACAGTCCTTGCTGTAAAAACTGTCAGTTTGAGACTGCCCAGAAGAAGTGCCAGGAGGCGATTAATGCTACTTGCAAAGGCGTGTCCTACTGCACAG___GTAATAGCAGTGAGTGCCCGCCTCCAGGAAATGCTGAAGATGACACTGTTTGCTTGGATCTTGGCAAGTGTAAGGATGGGAAATGCATCCCTTTCTGCGAGAGGGAACAGCAGCTGGAGTCCTGTGCATGTAATG|TCAGATGTGAAACCAGGTAAAATTGTGTTCCAGAGGAAACCTGTCCAGCTCCCGCCAGCTAGAACGCTTCTGAGAACAAGGAACCTGCACCTCACAGCTGACAACCACGGTTCTCAGAGTCCCAATAACTGCTGGGAGCTGACGGCTCCTTAGCCAGGACTTCAACACGTGATTTGTTTCTCTCGAAAAACAGCAGCATGGAAAGCGTAAATCCCAGGGAGTCATAAGGGAAGGCAGAAGAGAGC NSPCCKNCQFETAQKKCQEAINATCKGVSYCTGNSSECPPPGNAEDDTVCLDLGKCKDGKCIPFCEREQQLESCACN|vrcetr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12325 MFSD14CP::ZNF367 ENSG00000290770.1::ENSG00000165244.7 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MFSD14CP ENSG00000290770.1 lncRNA - - chr9:96887373-97013708:- chr9:97013259:- chr9:99649655-99775990:- chr9:99775541:- ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96398314:- chr9:99148223-99180652:- chr9:99160596:- chr9:96976239,chr9:96976244 chr9:96410890,chr9:96410892 NA NA chr9:99738521,chr9:99738526 chr9:99173172,chr9:99173174 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 10 50 11 130 186 ENST00000647176.1 ENST00000375256.5 upstream downstream duplicates(5),inconsistently_clipped(1),low_entropy(2),mismappers(4),mismatches(8) CGCGGCATGAGCGTGGAGCCGCCGCCGGAGCTGGAGGAGAAGGCGGCGTCGGAGCCCGAGGCGGGAGCCATGCCGGAGAAGCGCGCGGGCGCGCAGGCCGCGGGGAGCACCTGG|GATGGAATCCGACGTGGTAGGCCCAGAGCAGATACTGTCCGCGATTTAATAAATGAAGGAGAGCATTCATCCAGCAGAATCCGTTGTAACATCTGTAATAGGGTGTTTCCACGGGAGAAATCGCTCCAGGCTCACAAAAGGACTCATACAG___GTGAGAGGCCCTATCTGTGTGACTATCCAGACTGTGGAAAAGCCTTTGTTCAAAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12326 RAB1A::PELI1 ENSG00000138069.18::ENSG00000197329.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB1A ENSG00000138069.18 protein_coding - - chr2:65070696-65130331:- chr2:65129893:- chr2:65297830-65357465:- chr2:65357027:- PELI1 ENSG00000197329.12 protein_coding - - chr2:64092652-64144420:- chr2:64108379:- chr2:64319786-64371554:- chr2:64335513:- chr2:65113454 chr2:64143526 NA NA chr2:65340588 chr2:64370660 NA NA sense sense stop-codon CDS/splice-site 5'UTR/splice-site deletion high none |Pellino(100%) |Pellino(100%) 24 27 17 2902 187 ENST00000649427.1 ENST00000358912.5 upstream downstream duplicates(2),mismatches(1) GCTGAGTGGCGGCGGCTGCTGATTGTGTTCTAGGGGACGGAGTAGGGGAAGACGTTTGCTCTCCCGGAACAGCCTATCTCATTCCTTTCTTTCGATTACCCGTGGCGCGGAGAGTCAGGGCGGCGGCTGCGGCAGCAAGGGCGGCGGTGGCGGCGGCGGCAGCTGCAGTGACATGTCCAGCATGAATCCCGAATA|GAAATAATGCAAAAGGTGTCCCAAGGCTCCTGACCAGTGAACAAAGATTTGAGAAAGACAGCCAAGCTCATGTTTTCTCCTGATCAAGAAAATCATCCATCTAAAGCACCAGTAAAATATGGTGAACTCATTGTCTTAGG___GTATAATGGGTCTCTCCCAAATGGCGATAGAGGAAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12327 MFSD14CP::ZNF367 ENSG00000196312.16::ENSG00000165244.7 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MFSD14CP ENSG00000196312.16 transcribed_unprocessed_pseudogene - - chr9:96949555-97013366:- chr9:97013259:- chr9:99711837-99775648:- chr9:99775541:- ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96398314:- chr9:99148223-99180652:- chr9:99160596:- chr9:96976239,chr9:96976244 chr9:96410890,chr9:96410892 NA NA chr9:99738521,chr9:99738526 chr9:99173172,chr9:99173174 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 8 50 6 130 186 ENST00000650909.1 ENST00000375256.5 upstream downstream duplicates(4),inconsistently_clipped(1),low_entropy(2),mismappers(1),mismatches(3) GCCGGAGCTGGAGGAGAAGGCGGCGTCGGAGCCCGAGGCGGGAGCCATGCCGGAGAAGCGCGCGGGCGCGCAGGCCGCGGGGAGCACCTGG|GATGGAATCCGACGTGGTAGGCCCAGAGCAGATACTGTCCGCGATTTAATAAATGAAGGAGAGCATTCATCCAGCAGAATCCGTTGTAACATCTGTAATAGGGTGTTTCCACGGGAGAAATCGCTCCAGGCTCACAAAAGGACTCATACAG___GTGAGAGGCCCTATCTGTGTGACTATCCAGACTGTGGAAAAGCCTTTGTTCAAAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12328 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2154 TRUE 823 KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32879435:- chr7:32907784-32933743:- chr7:32919047:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32679130:- chr7:32620561-32801399:- chr7:32718742:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none BTB/POZ_domain(32%)| BTB(1%)| 26 18 19 211 101 ENST00000304056.9 ENST00000417811.2 upstream downstream duplicates(2),mismappers(1) CTTGACCTTCCATCAGTAAGACGGACTTTTCTAATCTGTTCCTGGAGATATTAATGGAATACAGTCATGTCCACTCAAGACGAGAGGCAGATCAATACTGAATATGCTGTGTCATTGTTGGAACAGTTGAAACTGTTTTATGAACAGCAGTTGTTTACTGACATAGTGTTAATTGTTGAGGGCACTGAATTCCCTTGTCATAAGATGGTTCTTGCAACATGTAGCTCTTATTTCAG|GGACTGTATTATTCCTATTTCAAGACTATTGTGGAAACACCCTCATTTTTGAATGGAGTATGGATGATTATGAATGATAAACTGACTGAATACCCCCTTGTTATTAATACATTAAAAAGATTCAATCTTTACCCTGAG___GTAATTTTGGCCAGCTGGTACTGGATTTATACCAAAATAATGGACTTCATTGCAATTCAAACCAAGA MSTQDERQINTEYAVSLLEQLKLFYEQQLFTDIVLIVEGTEFPCHKMVLATCSSYFr|dciipisrllwkhphf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12329 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2154 TRUE 823 KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32879701:- chr7:32907784-32933743:- chr7:32919313:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32679130:- chr7:32620561-32801399:- chr7:32718742:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none none none 1 2 4 154 101 ENST00000485611.5 ENST00000417811.2 upstream downstream mismatches(1) GCTGAACATAGGATGTTGCCACAAAATCTACCTCGTGTATTTTTCTCTTTCACTCATGAGCTGCACAATTGCAGATTTGAGCACAATGTCTGCAGACTGTGTTGAAAAACTCTGAAGAACCTAATTAACACAGGATGACCTAGGAGTGATTCTAAGTCTGTGTAACAAGATATTACTCATTAGTGAATGTGTCAGTCTTGGTACTGAATGCTGCAGATAACAGCAA|GGACTGTATTATTCCTATTTCAAGACTATTGTGGAAACACCCTCATTTTTGAATGGAGTATGGATGATTATGAATGATAAACTGACTGAATACCCCCTTGTTATTAATACATTAAAAAGATTCAATCTTTACCCTGAG___GTAATTTTGGCCAGCTGGTACTGGATTTATACCAAAATAATGGACTTCATTGCAATTCAAACCAAGATATGTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12330 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2154 TRUE 823 KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32891536:- chr7:32907784-32933743:- chr7:32931148:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32679130:- chr7:32620561-32801399:- chr7:32718742:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none none none 0 3 0 102 101 ENST00000304056.9 ENST00000417811.2 upstream downstream none CCAGTGTGGACGGGGCCACCGGCTGGAGCGGATCCCACACCTCCGGACCGAGGGACGCGG|GGACTGTATTATTCCTATTTCAAGACTATTGTGGAAACACCCTCATTTTTGAATGGAGTATGGATGATTATGAATGATAAACTGAC...GACGGTTACCAGAGGAGAAGGACTCAGTCCTACTGAAAGCTGTGAAG___GATTGGGAGATCTTGCTTGCTTCTATGTTGCTGTAATTTTTATTTTAAATGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12331 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2154 TRUE 823 KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32879435:- chr7:32907784-32933743:- chr7:32919047:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32623439:- chr7:32620561-32801399:- chr7:32663051:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none BTB/POZ_domain(32%)| BTB(1%)| 0 1 0 211 84 ENST00000304056.9 ENST00000417811.2 upstream downstream none CAACATGTAGCTCTTATTTCAG|ATTTCTCTTGCACTTTGTTTTGTTGTGATGTTTGGGAACTCAATGTTATTATTATGCTGCTTCTTTGGTAATTATTTGG___GGTATTCTGGCAATGA TCSSYFr|fllhfvll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12332 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2154 TRUE 823 KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32891536:- chr7:32907784-32933743:- chr7:32931148:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32676908:- chr7:32620561-32801399:- chr7:32716520:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none none none 0 1 0 102 88 ENST00000304056.9 ENST00000417811.2 upstream downstream none GCTGGAGCGGATCCCACACCTCCGGACCGAGGGACGCGG|GTAATTTTGGCCAGCTGGTACTGGATTTATACCAAAATAATGGACTTCATTGCAATTCAAACCAAGATATGTCGGACGGTTACCAGAGGAGAAGGACTCAGTCCTACTGAAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12333 TC2N::FBLN5 ENSG00000165929.13::ENSG00000140092.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1208 TRUE 2155 TRUE 824 TC2N ENSG00000165929.13 protein_coding - - chr14:91779746-91867536:- chr14:91802254:- chr14:92246090-92333880:- chr14:92268598:- FBLN5 ENSG00000140092.16 protein_coding - - chr14:91869411-91947987:- chr14:91895072:- chr14:92335755-92414331:- chr14:92361416:- chr14:91801125,chr14:91801129 chr14:91925632,chr14:91925633 NA NA chr14:92267469,chr14:92267473 chr14:92391976,chr14:92391977 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Calcium-binding_EGF_domain(56%),Complement_Clr-like_EGF-like(100%) |EGF_3(100%),EGF_CA(36%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 21 9 27 152 465 ENST00000435962.7 ENST00000342058.9 upstream downstream duplicates(2),mismatches(3) ATTTGTGGTGCCCAAGTTTAAGTTATCTTACATTCAACCCAGGACACAAGAAACTCCTTCACATCTGGAAGAACTTGAAG___GATCTGCCAGAGCATCTTTTGGAGATCGAAAGGTAGAACTTTCCAGTTCATCCCAGCACGGACCTAGCTATGATGTGTATAACCCATTCTATATGTATCAGCACATTTCACCTGATTTGAGTCGACGCTTTCCTCCCCGTTCAGAAGTGAcGAGACTGTATGGATCGG|ATGTGGACGAGTGTGCAACAGATTCCCACCAGTGCAACCCCACCCAGATCTGCATCAATACTGAAGGCGGGTACACCTGCTCCTGCACCGACGGATATTGGCTTCTGGAAGGCCAGTGCTTAG___ACATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGTTCCTGGATCCTATTCTTGTACATGCAACCC FVVPKFKLSYIQPRTQETPSHLEELEGSARASFGDRKVELSSSSQHGPSYDVYNPFYMYQHISPDLSRRFPPRSEVtRLYGS|dVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST exact 92278656,92278656 FALSE,FALSE 92409305,92361416 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12334 TC2N::FBLN5 ENSG00000165929.13::ENSG00000140092.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1209 TRUE 2155 TRUE 824 TC2N ENSG00000165929.13 protein_coding - - chr14:91779746-91867536:- chr14:91812312:- chr14:92246090-92333880:- chr14:92278656:- FBLN5 ENSG00000140092.16 protein_coding - - chr14:91869411-91947987:- chr14:91895072:- chr14:92335755-92414331:- chr14:92361416:- chr14:91801125,chr14:91801129 chr14:91925632,chr14:91925633 NA NA chr14:92267469,chr14:92267473 chr14:92391976,chr14:92391977 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Calcium-binding_EGF_domain(56%),Complement_Clr-like_EGF-like(100%) |EGF_3(100%),EGF_CA(36%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 10 9 9 195 465 ENST00000435962.7 ENST00000342058.9 upstream downstream low_entropy(1),mismatches(3) TGGCAACAGAATTTATAAAGAGTTGCTGTGGAGGATGTTTCTATGGTGAAACAGAAAAACACAACT___TTTCTGTGGAAAGAGATTTTAAAGCAGCAGTCCCAAATAGTCAAAATGCTACTATCTCTGTACCTCCATTGACTTCTGTTTCTGTAAAGCCTCAGCTTGGCTGTACTGAGGATTATTTGCTTTCCAAATTACCATCTGATGGCAAAGAAGTACCATTTGTGGTGCCCAAGTTTAAGTTATCTTACATTCAACCCAGGACACAAGAAACTCCTTCACATCTGGAAGAACTTGAAG|ATGTGGACGAGTGTGCAACAGATTCCCACCAGTGCAACCCCACCCAGATCTGCATCAATACTGAAGGCGGGTACACCTGCTCCTGCACCGACGGATATTGGCTTCTGGAAGGCCAGTGCTTAG___ACATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGTTCCTGGAT ATEFIKSCCGGCFYGETEKHNFSVERDFKAAVPNSQNATISVPPLTSVSVKPQLGCTEDYLLSKLPSDGKEVPFVVPKFKLSYIQPRTQETPSHLEELE|dVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST exact 92278656,92278656 TRUE,TRUE 92409305,92361416 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12335 TC2N::FBLN5 ENSG00000165929.13::ENSG00000140092.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2155 TRUE 824 TC2N ENSG00000165929.13 protein_coding - - chr14:91779746-91867536:- chr14:91836371:- chr14:92246090-92333880:- chr14:92302715:- FBLN5 ENSG00000140092.16 protein_coding - - chr14:91869411-91947987:- chr14:91895072:- chr14:92335755-92414331:- chr14:92361416:- chr14:91801125,chr14:91801129 chr14:91925632,chr14:91925633 NA NA chr14:92267469,chr14:92267473 chr14:92391976,chr14:92391977 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Calcium-binding_EGF_domain(56%),Complement_Clr-like_EGF-like(100%) |EGF_3(100%),EGF_CA(36%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 1 0 1 79 465 ENST00000556018.5 ENST00000342058.9 upstream downstream none GCCCTGGGAAAGGCAGGACCTCGAGGCGCGGCCGCGCGAGGTGACCGGAGTCACAGTTCCCGCAGGCGGCGACAGCAGAGCGCCCACTGCCTCCAGCAG|ATGTGGACGAGTGTGCAACAGATTCCCACCAGTGCAACCCCACCCAGATCTGCATCAATACTGAAGGCGGGTACACCTGCTCCTGCACCGACGGATATTGGCTTCTGGAAGGCCAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST exact 92278656,92278656 FALSE,FALSE 92409305,92361416 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12338 COL6A2::DIP2A ENSG00000142173.17::ENSG00000160305.18 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1210 TRUE 2157 TRUE 825 COL6A2 ENSG00000142173.17 protein_coding + + chr21:46098112-46132848:+ chr21:46098173:+ chr21:47518026-47552762:+ chr21:47518087:+ DIP2A ENSG00000160305.18 protein_coding + + chr21:46458891-46570015:+ chr21:46539877:+ chr21:47878804-47989928:+ chr21:47959790:+ chr21:46105491,chr21:46105489 chr21:46539053,chr21:46539048 NA NA chr21:47525405,chr21:47525403 chr21:47958966,chr21:47958961 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |AMP-binding_enzyme(68%) |AMP-binding(39%) 1 49 0 1149 307 ENST00000300527.9 ENST00000417564.3 downstream upstream duplicates(2) CGGCGCCCGCGCCTCGGGCCGTCGGGAGCGGAGCCTCCTCGGGACCAG|GGTCGATCTCCTCCTGTGACGCCTTCCTCAACGTCTTCCAGTCCAGAGGTCTGAGGCCAGAGGTCATCTGTCCTTGTGCAAGTTCTCCTGAGGCGCTGACTGTCGCCATCCGCAG___GCCACCTGATCTGGGAGGACCACCTCCAAGAAAAGCAGTCCTaTCGATGAACGGTCTAAGTTATGGTGTTATCAGAGTGGATACTGAAGAAAAGTTGTCAGTCCTTACTGTTCAGGACGTTGGTCAGGTGATGCCTGGAG___CTAATGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12339 COL6A2::DIP2A ENSG00000142173.17::ENSG00000160305.18 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2157 TRUE 825 COL6A2 ENSG00000142173.17 protein_coding + + chr21:46098112-46132848:+ chr21:46098173:+ chr21:47518026-47552762:+ chr21:47518087:+ DIP2A ENSG00000160305.18 protein_coding + + chr21:46458891-46570015:+ chr21:46541756:+ chr21:47878804-47989928:+ chr21:47961669:+ chr21:46105491,chr21:46105489 chr21:46539053,chr21:46539048 NA NA chr21:47525405,chr21:47525403 chr21:47958966,chr21:47958961 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |AMP-binding_enzyme(64%) |AMP-binding(35%) 0 2 0 1149 311 ENST00000300527.9 ENST00000417564.3 downstream upstream none CCTCGGGCCGTCGGGAGCGGAGCCTCCTCGGGACCAG|GCCACCTGATCTGGGAGGACCACCTCCAAGAAAAGCAGTCCTaTCGATGAACGGTCTAAGTTATG...TCAGGACGTTGGTCAGGTGATGCCTGGAG___CTAATGTATGTGTTGTGAAGTTAGAAGGTACCCCTTATCTTTGTAAAACTGATGAAGTGGGAGAAATATGCG...AGTGCAACTGGCACAGCGTACTATGGATTGCTTGGAATCACGAAGAATGTGTTTGAG___GCAGTTCCGGTCACCACAGGAGGAGCACCCATCTTTGACAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12340 ZNF627::ZNF441 ENSG00000198551.10::ENSG00000197044.11 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF627 ENSG00000198551.10 protein_coding + + chr19:11559374-11619161:+ chr19:11597630:+ chr19:11670189-11729976:+ chr19:11708445:+ ZNF441 ENSG00000197044.11 protein_coding + + chr19:11767000-11784078:+ chr19:11777611:+ chr19:11877815-11894893:+ chr19:11888426:+ chr19:11609009,chr19:11609005 chr19:11776165,chr19:11776158 NA NA chr19:11719824,chr19:11719820 chr19:11886980,chr19:11886973 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) Metallophos(100%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 9 11 20 159 115 ENST00000361113.10 ENST00000357901.5 downstream upstream duplicates(2),mismappers(8),mismatches(1) TCTGGCGACCGTCCCCACCCGGGCTCGCGTCTCCGTTTCTCCGAGAGGCCCAAGGTGTCTCCGCCGCAGCCTCTGTCGCGCCGTGACCTGTACAGGTCGCGGGAGTCGTAGGGAGGACGCCGGGACACCTGGAAGCCGAGAAATG|GACTCAGTGGCATTTGAGGATGTGGCTATAAACTTCACCTGTGAGGAGTGGGCTTTGCTGGGTCCATCACAGAAGAGTCTCTACAGAGATGTGATGCAGGAAACCATCAGAAACCTGGACTGTATAG___GAATGATATGGCAAAATCATGATATAGAAGAAGATCAGTACAAAGATCTCAGAAGAAATCTAAG___ATGTCATATGGTAGAGAGAGC M|DSVAFEDVAINFTCEEWALLGPSQKSLYRDVMQETIRNLDCIGMIWQNHDIEEDQYKDLRRNLRCHMVER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12349 SPIRE1::ENSG00000283403 ENSG00000134278.16::ENSG00000283403.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SPIRE1 ENSG00000134278.16 protein_coding - - chr18:12446512-12658107:- chr18:12535476:- chr18:12446511-12658106:- chr18:12535475:- ENSG00000283403 ENSG00000283403.1 lncRNA - + chr19:28435388-28727680:- chr19:28600827:+ chr19:28926295-29218587:- chr19:29091734:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Kinase_non-catalytic_C-lobe_domain(100%)| KIND(100%)| 10 5 8 330 18 ENST00000409402.9 unknown upstream upstream duplicates(1) CAGAAGAAGGCCTGGGAGATGAAGATGAAAAGAGAAAAATCTCAGCTATTCGGTCATATAGAGATGTCATGAAG___TTGTGTGCTGCTCATCTCCCTACTGAATCAGATGCACCAAATCATTATCAGGCAGTATGTCGTGCACTGTTTGCAGAAACAATGGAGCTCCATACATTTCTGACCAAAATTAAGAGTGCGAAAGAG|GCCCTCTGCAACATAAAATGCAGCATGGGAAAGATGAGCCCCAACGACCTGTTAATCAATGAGCTAGTCTTGCATCCACCTGCTGCACGTAGCAGGAGAATGGGTGGTGAGAAGATCGACTCTCAGGTTCCGGCAGGGGCTGTGACATCCAAGGCCAGACAGCTGGGCTGCCCGAGTGTGGAGCAAATGCCCCCTTTGGAGGCAGTTGGTGGAAGAGGAAAGCATTTTTCTCCAGGCTGCTCCCTCCA...CAACCAACCTGGTTTTCACAAAGCCAAATTCAGCTTCAAGGGCAGCCATGCATTACCCTTTCAGCAGAGTTGAGATATAAAGTCCCAATACTTTTTTTTCC EEGLGDEDEKRKISAIRSYRDVMKLCAAHLPTESDAPNHYQAVCRALFAETMELHTFLTKIKSAKE|alcnikcsmgkmspndllinelvlhppaarsrrmggekidsqvpagavtskarqlgcpsveqmppleavggrgkhfspgcsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12350 KMT5B::CHKA ENSG00000110066.16::ENSG00000110721.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2159 TRUE 826 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68185781:- chr11:67922330-67981319:- chr11:67953248:- CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68081848:- chr11:67820326-67888911:- chr11:67849315:- chr11:68184033,chr11:68184035 chr11:68096517,chr11:68096516 NA NA chr11:67951500,chr11:67951502 chr11:67863984,chr11:67863983 NA NA sense sense out-of-frame CDS/splice-site exon deletion/read-through high none |Choline/ethanolamine_kinase(93%) |APH(29%),Choline_kinase(51%),EcKL(100%) 9 3 11 257 144 ENST00000304363.9 ENST00000530730.1 upstream downstream duplicates(4) GGAGGTCGAACAGAT___GTAATGGTAACTCGGGATTTGAAGGACAGAGTCGCTATGTACCATCCTCTGGAATGTCCGCCAAGGAACTCTGTGAAAATGATGACCTAGCAACCAGTTTGGTTCTTGATCCCTATTTAGGTTTTCAAACACACAAAATGAATACTAG|GTTGACTTGAGAGAACCACGTAGCTAAATTGGTGAGAGACTCAGCCTGACCGCTTGTCTTTAGAAGGCCTGATTGGAAGAGTGCACTCTATTGACTTTCCTCTAACAATGAAATTGTGAAAG___AGGTCCTGTAATAAAGAGGGATCCGAACA RSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNTr|lt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12351 KMT5B::CHKA ENSG00000110066.16::ENSG00000110721.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2159 TRUE 826 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68185781:- chr11:67922330-67981319:- chr11:67953248:- CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68081457:- chr11:67820326-67888911:- chr11:67848924:- chr11:68184033,chr11:68184035 chr11:68096517,chr11:68096516 NA NA chr11:67951500,chr11:67951502 chr11:67863984,chr11:67863983 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Choline/ethanolamine_kinase(93%) |APH(28%),Choline_kinase(50%),EcKL(100%) 1 4 8 257 181 ENST00000304363.9 ENST00000265689.9 upstream downstream none CAGAATCAATCAAAATTACAGCACACGGGGAAGGACACCCTGAAGGCTGGCAAAAATGCAGTCGAGAGGAGGTCGAACAGAT___GTAATGGTAACTCGGGATTTGAAGGACAGAGTCGCTATGTACCATCCTCTGGAATGTCCGCCAAGGAACTCTGTGAAAATGATGACCTAGCAACCAGTTTGGTTCTTGATCCCTATTTAGGTTTTCAAACACACAAAATGAATACTAG|AGGTCCTGTAATAAAGAGGGATCCGAACAAGCTCAGAAAGAAAATGAATTTCAA___GGGGCTGAGGCCATGGTTCTGGAGAGCGTTATGTTTGCCATTCTCGCAGAGAGGTCACTTGGGCCAAAACTCTATGGCATCT...AGCCGGCGATTAGATACTGAAGAATTAAGTTTGCCAGATATTTCTGCAGAAATCGCCGAGAAAATGGCTACATTTCATGGTATGAAAATGCCATTCAATAA QNQSKLQHTGKDTLKAGKNAVERRSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNTr|gpvikrdpnklrkkmnfkglrpwfwralclpfsqrghlgqnsma NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12352 KMT5B::CHKA ENSG00000110066.16::ENSG00000110721.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2159 TRUE 826 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68185781:- chr11:67922330-67981319:- chr11:67953248:- CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68074830:- chr11:67820326-67888911:- chr11:67842297:- chr11:68184033,chr11:68184035 chr11:68096517,chr11:68096516 NA NA chr11:67951500,chr11:67951502 chr11:67863984,chr11:67863983 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Choline/ethanolamine_kinase(85%) |APH(16%),Choline_kinase(28%),EcKL(100%) 0 1 4 257 174 ENST00000304363.9 ENST00000265689.9 upstream downstream none CAGAATCAATCAAAATTACAGCACACGGGGAAGGACACCCTGAAGGCTGGCAAAAATGCAGTCGAGAGGAGGTCGAACAGAT___GTAATGGTAACTCGGGATTTGAAGGACAGAGTCGCTATGTACCATCCTCTGGAATGTCCGCCAAGGAACTCTGTGAAAATGATGACCTAGCAACCAGTTTGGTTCTTGATCCCTATTTAGGTTTTCAAACACACAAAATGAATACTAG|GGGGCTGAGGCCATGGTTCTGGAGAGCGTTATGTTTGCCATTCTCGCAGAGAGGTCACTTGGGCCAAAACTCTATGGCATCTTTCCCCAAGGCCGACTGGAGCAGTTCATCCCG___AGCCGGCGATTAGATACTGAAGAATTAAGTTTGCCAGATATTTCTGCAGAAATCGCCGAGAAAAT QNQSKLQHTGKDTLKAGKNAVERRSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNTr|glrpwfwralclpfsqrghlgqnsmasfpkadwssssragd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12353 CAMK1D::ENSG00000283403 ENSG00000183049.14::ENSG00000283403.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMK1D ENSG00000183049.14 protein_coding + + chr10:12349547-12835545:+ chr10:12666810:+ chr10:12391546-12877545:+ chr10:12708809:+ ENSG00000283403 ENSG00000283403.1 lncRNA - + chr19:28435388-28727680:- chr19:28707434:+ chr19:28926295-29218587:- chr19:29198341:+ chr10:12750566,chr10:12750564 chr19:28664043,chr19:28664038 NA NA chr10:12792565,chr10:12792563 chr19:29154950,chr19:29154945 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Protein_kinase_domain(29%)| PK_Tyr_Ser-Thr(67%),Pkinase(66%)| 8 4 8 66 16 ENST00000619168.5 unknown downstream upstream duplicates(1) AGGAAAGCAGCATAGAGAATGAGATAGCCGTCCTGAGAAA___GATTAAGCATGAAAATATTGTTGCCCTGGAAGACATTTATGAAAGCCCAAATCACCTGTACTTGGTCATGCAGCT|GTATTTATAGGCAGTGTGCAAAGTGACAAATATACAACCCCACAAAGCAACTCGAGTATTATTCCAAGTGCCTTCATGTCTCACTCTGAAAATGGAGCCAACACTGCACGCTGAAGCATCTCCTTTGGTAGTGGACTGAACCTAATGCATGCCTG ESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQl|yl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4480 chr10:12578753-12578823:+ FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type 1D CAMK CAMK1 Q8IU85 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12356 SPIRE1::ENSG00000266893 ENSG00000134278.16::ENSG00000266893.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SPIRE1 ENSG00000134278.16 protein_coding - - chr18:12446512-12658107:- chr18:12535476:- chr18:12446511-12658106:- chr18:12535475:- ENSG00000266893 ENSG00000266893.1 lncRNA - + chr19:28491864-28632728:- chr19:28600827:+ chr19:28982771-29123635:- chr19:29091734:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Kinase_non-catalytic_C-lobe_domain(100%)| KIND(100%)| 10 5 5 330 18 ENST00000409402.9 unknown upstream upstream duplicates(1) CGGTAGCAATGATGAGGGCTATGAGGCTGCAGAAGAAGGCCTGGGAGATGAAGATGAAAAGAGAAAAATCTCAGCTATTCGGTCATATAGAGATGTCATGAAG___TTGTGTGCTGCTCATCTCCCTACTGAATCAGATGCACCAAATCATTATCAGGCAGTATGTCGTGCACTGTTTGCAGAAACAATGGAGCTCCATACATTTCTGACCAAAATTAAGAGTGCGAAAGAG|GCCCTCTGCAACATAAAATGCAGCATGGGAAAGATGAGCCCCAACGACCTGTTAATCAATGAGCTAGTCTTGCATCCACCTGCTGCACGTAGCAGGAGAATGGGTGGTGAGAAGATCGACTCTCAGGTTCCGGCAGGGGCTGTGACATCCAAGGCCAGACAGCTGGGCTGCCCGAGTGTGGAGCAAATGCCCCCTTTGGAGGCAGTTGGTGGAAGAGGAAAGCATTTTTCTCCAGGCTGCTCCCTCCA...CAACCAACCTGGTTTTCACAAAGCCAAATTCAGCTTCAAGGGCAGCCATGCATTACCCTTTCAGCAGAGTTGAGATATAAAGTCCCAATACTTTTTTTTCC GSNDEGYEAAEEGLGDEDEKRKISAIRSYRDVMKLCAAHLPTESDAPNHYQAVCRALFAETMELHTFLTKIKSAKE|alcnikcsmgkmspndllinelvlhppaarsrrmggekidsqvpagavtskarqlgcpsveqmppleavggrgkhfspgcsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12357 NIPBL::CPLANE1 ENSG00000164190.19::ENSG00000197603.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:36976402:+ chr5:36876871-37066515:+ chr5:36976504:+ CPLANE1 ENSG00000197603.16 protein_coding - + chr5:37106228-37249376:- chr5:37173785:+ chr5:37106330-37249478:- chr5:37173887:+ chr5:36981754,chr5:36981755 chr5:37159341,chr5:37159339 NA NA chr5:36981856,chr5:36981857 chr5:37159443,chr5:37159441 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' high none none none 9 5 5 122 90 ENST00000282516.13 unknown downstream upstream duplicates(1) CAAACAGCATTCCTTCCAGCAAATCAAGTGCCTGTTTTACAACAGAACACTTCAGTTGCTGCAAAACAACCCCAGACTTCTGTGGTACAGAATCAACAACAGATATCACAACAGGGACCTATATATGATGAAGTGGAATTGGATGCATTGGCTGAAATTGAGCGAATAGAGAGAGAATCAGCTATTGAAAGGGAGCGCTTCTCAAAAGAAGTTCAAGATAAAG|CATCTGCCTAACGGACTCCGAACAATCTGGTAACTGAGCCGTGcATTCATTTCTCTGGGTCTTCTGAGGTGTTGGAGCAGGTGGTTGTGAAGCAACATTGACTCCATTTGATATCAGAAGTGGAACTGAG QTAFLPANQVPVLQQNTSVAAKQPQTSVVQNQQQISQQGPIYDEVELDALAEIERIERESAIERERFSKEVQDK|asa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12358 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1211 TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5957973:- chr19:5916150-5978153:- chr19:5957984:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 4 9 6 57 155 ENST00000593241.5 ENST00000591092.5 upstream downstream duplicates(1),mismatches(1) CGCGAGGCTGGCTGGCGGCGGGAGCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|AAAAGCCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAGGATAAAGGACAAAAG___AGGTCAGCTGGCGGCTCCAGTCCTGAAGGCGGAGAAG___ATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAACATCCTCTTTAACCCAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12359 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5957935:- chr19:5916150-5978153:- chr19:5957946:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 0 2 6 57 163 ENST00000593241.5 ENST00000588879.5 upstream downstream mismatches(1) CGGGCGGGCTGCGCGAGGCTGGCTGGCGGCGGGAGCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|AAGGATAAAGGACAAAAG___AGGTCAGCTGGCGGCTCCAGTCCTGAAGGCGGAGAAG___ATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAACATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12360 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5957968:- chr19:5916150-5978153:- chr19:5957979:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 0 2 6 57 155 ENST00000593241.5 ENST00000590623.5 upstream downstream mismatches(1) CGGGCGGGCTGCGCGAGGCTGGCTGGCGGCGGGAGCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|CCTGCCATTGCTCCGCCCGTCTTTGTGTTTCAGAAGGATAAAGGACAAAAG___AGGTCAGCTGGCGGCTCCAGTCCTGAAGGCGGAGAAG___ATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAACATCCTCTTTAACCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12361 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5941835:- chr19:5916150-5978153:- chr19:5941846:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 0 2 4 57 208 ENST00000593241.5 ENST00000340578.10 upstream downstream mismatches(1) GCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|AGGTCAGCTGGCGGCTCCAGTCCTGAAGGCGGAGAAG___ATTCTGACAGAGAAGATGGAAATTACTGCCCTCCTGTCAAGCGAGAAAGAACATCCTCTTTAACCCAGTTCCCACCCTCACAGTCAG___AGGAAAGGAGCAGTGGCTTCCGGTTGAAGCCACCAACGCTGATCCACGGCCAAGCC...AGCAGACTGCACGGGGGCAGTGCCCGCAGCATCCCCTGACACTGCTGCATGGAGAAGTCCTTCCGAAGCTGCCGATGAGGTGTGTGCACTTGAG___GAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12362 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5951596:- chr19:5916150-5978153:- chr19:5951607:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 0 1 5 57 17 ENST00000593241.5 ENST00000591881.5 upstream downstream duplicates(1),mismatches(1) CGGGCGGGCTGCGCGAGGCTGGCTGGCGGCGGGAGCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|TCCCCTGCAGAGCAAAAAAACTTGTCGGATTCGGGAGAGGAGCCTCGGGGGGAGGCTGAGGCCCCCCACCATGGCACGGGTCACCCCGAGTCAGCTGGCGAGCATGCCCTAGAACCTCCTGCCCCTGCT...CAGGG___CAGGAAGAAGAAAAGACTCTTCCTTTGAACCCAGAAGGAATCCCCTGAGCCCTTTATCTTTGTATTAAGAAGCCTTTTGAAGATTATAGGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12363 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2160 TRUE 827 RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5933479:- chr19:5916150-5978153:- chr19:5933490:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |RanBP1_domain(100%) AMP-binding(100%)|Ran_BP1(100%) 1 0 2 57 312 ENST00000593241.5 ENST00000340578.10 upstream downstream mismatches(1) GCCGGAGGAGGAGCGGCCGCCGCCGCCACCGCCGCCGCCATAGAGACTGTAGCCGTGGAGACTGTTACTTACCAACGGGGACCAACACGCAGCAGCCGCTGCCGCCGCCGCGGGAGCCGCTGCCCGAACTCCCGGCCCGAACTCCAG|AGGAAAGGAGCAGTGGCTTCCGGTTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12364 RSU1::ENSG00000286125 ENSG00000148484.18::ENSG00000286125.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2161 TRUE 828 RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56726823:+ chr19:57181309-57334763:+ chr19:57238191:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense unknown CDS/splice-site intron translocation high none Leucine_rich_repeat(100%)| LRR_4(100%),LRR_8(100%)| 1 1 15 988 10 ENST00000602389.1 unknown upstream upstream mismappers(1),mismatches(3) CTTCTACCTGA___CCACCCTGCGTGCACTCTATCTAAGTGACAACGATTTTGAAATCCTGCCGCCAGATATTGGGAAGCTCACAAAGTTGCAGATA___CTCAGCCTTAGGGATAACGACCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACCCAGCTTAAAGAGCTCCACATTCAGGGGAACCGCCTCACCGTTCTGCCCCCAGAACTAG|AGTCCTGCTCTTGTCGCCCAGGCACGACCTCAGTGTGGCATGATCATTCAGTGGCACATTCTCAGCTCACTGCAACCTCGAGATCGCTCAGTGGCACGAACTCGGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAACGATTCTCCTGCCTCATCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCATCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCGAAC...CCTGACCTCAGGTGATCCACCCCCATCAGCCTCCCGAAGTGAAAAACCACAGTTTGTTTACCCATTATCCACTCCTCCCTTGATGGACACTTCAGTTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12365 RSU1::ENSG00000286125 ENSG00000148484.18::ENSG00000286125.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1212 TRUE 2161 TRUE 828 RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56727644:+ chr19:57181309-57334763:+ chr19:57239012:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense unknown CDS/splice-site exon/splice-site translocation high none Leucine_rich_repeat(100%)| LRR_4(100%),LRR_8(100%)| 1 2 9 988 6 ENST00000602389.1 ENST00000650902.1 upstream upstream none CCCACACAGATCAGTAGCCTTCAGAAACTCAAACACCTGAACCTTGG___CATGAACAGGCTGAACACTTTGCCACGAGGCTTCGGCTCCCTGCCAGCTCTTG...CTTCTACCTGA___CCACCCTGCGTGCACTCTATCTAAGTGACAACGATTTTGAAATCCTGCCGCCAGATATTGGGAAGCTCACAAAGTTGCAGATA___CTCAGCCTTAGGGATAACGACCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACCCAGCTTAAAGAGCTCCACATTCAGGGGAACCGCCTCACCGTTCTGCCCCCAGAACTAG|CAAGCACTGACACCTCAGCTTCACAGAGACATTGTGTCAGCCCAGGAAATGTAGAGAGACCAAATGCAGAATCTGTGAACCATTGGAGCTGGTAGTTTCCGTGGCCTCGGATGCGGAATGTTGCTGTTCTCCCCTCAATTTTAATGTATCCAGGGATCCTCTGCAGACAATTGCAGGTATGAAGATAGAAGAGCAGGAAGGCAGTAGGTCTTCATTGCAGGGGGAGAGAATGGAG...TGGATATTTCACAGTTTCTTGAATCAATAACGTCTCATTTGTACACTCTGATGGTCTCCATTTGTAATTTCTTGTTCATTATTGGTGTATCTCTTAGGCC...ATCAATATCATTAAAATGGCTATACAACACAAAGTAAACTACAGATTCAACGTTATTCCTATCAAATGACCAATGTAATTCTTCACATAATTGGAAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12366 RSU1::ENSG00000286125 ENSG00000148484.18::ENSG00000286125.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1213 TRUE 2161 TRUE 828 RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56789928:+ chr19:57181309-57334763:+ chr19:57301296:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense unknown CDS/splice-site exon/splice-site translocation high none Leucine_rich_repeat(100%)| LRR_4(100%),LRR_8(100%)| 1 5 6 988 29 ENST00000602389.1 ENST00000651337.2 upstream upstream duplicates(1) CGTACAACAACTTGAGCGAAAATTCTCTTCCTGGAAACTTCTTCTACCTGA___CCACCCTGCGTGCACTCTATCTAAGTGACAACGATTTTGAAATCCTGCCG...CAGATATTGGGAAGCTCACAAAGTTGCAGATA___CTCAGCCTTAGGGATAACGACCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACCCAGCTTAAAGAGCTCCACATTCAGGGGAACCGCCTCACCGTTCTGCCCCCAGAACTAG|GGACAGAGTCCTGAGCAAGGAAACCTAGAAGGGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCCAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATGGTGAGAAAGTCAGATATCATTTCTCAACTCAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12367 CORO2B::NOX5 ENSG00000103647.13::ENSG00000290203.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CORO2B ENSG00000103647.13 protein_coding + + chr15:68578993-68727806:+ chr15:68715311:+ chr15:68871332-69020145:+ chr15:69007650:+ NOX5 ENSG00000290203.13 protein_coding + + chr15:68930504-69062743:+ chr15:68974729:+ chr15:69222843-69355083:+ chr15:69267068:+ chr15:68718022,chr15:68718020 chr15:68951763,chr15:68951758 NA NA chr15:69010361,chr15:69010359 chr15:69244102,chr15:69244097 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none Domain_of_unknown_function_(DUF1899)(100%),WD_domain__G-beta_repeat(100%)| DUF1899(100%),WD40(100%)| 7 4 4 22 27 ENST00000261861.10 ENST00000260364.9 downstream upstream duplicates(1),mismappers(2),mismatches(2) CAACAACATCCTGTTCAGCGCTGGCTACGACTACAAG___GTCCTCATCTGGAACCTGGATGTGGGTGAGCCGGTGAAGATGATTGACTGCCACACGGATGTGAT...ACAAGACAGATTGCCCTCTGGGACCAG___GAGGACCTCTCCATGCCCCTGATCGAAGAGGAAATTGATGGGCTCTCTGGCCTCCTGTTCCCCTTCTATGATGCTGACACCCACATGCTCTACCTGGCTGGAAAG___GGTGATGGAAACATCCGGTACTACGAGATCAGCACTGAGAAGCCCTACCTGAGTTACCTCATGGAGTTCCGCTCCCCAGCCCCGCAGAAAGGCCTAG|GGTCTCAATCCATTGCGCCCAGGCTGGTATGCAGTCATGTTGTATCTGGAATTGGTGGGTTCTTGGTCTCACTGACTTCAAGAATGAAGCCGCAGACCCTCGTGGTGAGTGTTACAGTTCTTAAAGGTGGCGTGTCCAGGA...___CACCATGAGTGCCGAGGAGGATGCCAGGTGGCTCCGGTGGGTGACTCAGCAGTTTAAGACCATTGCAGGAGAAGATGGGGAG TRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGL|gsqsiaprlvcshvvsgiggflvsltsrmkpqtlvvsvtvlkggvsr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12368 ACAT1::RAB39A ENSG00000075239.14::ENSG00000179331.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE TRUE 1214 TRUE 2162 TRUE 829 ACAT1 ENSG00000075239.14 protein_coding + + chr11:108116695-108147603:+ chr11:108135242:+ chr11:107987422-108018330:+ chr11:108005969:+ RAB39A ENSG00000179331.3 protein_coding + + chr11:107928448-107963482:+ chr11:107961946:+ chr11:107799174-107834208:+ chr11:107832672:+ chr11:108138905,chr11:108138898 chr11:107932143,chr11:107932131 NA NA chr11:108009632,chr11:108009625 chr11:107802869,chr11:107802857 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Thiolase__N-terminal_domain(40%)|Ras_family(60%) Thiolase_N(65%),ketoacyl-synt(2%)|Arf(0%),Ras(0%),Roc(0%) 4 1 6 801 21 ENST00000672284.1 ENST00000320578.3 downstream upstream duplicates(1) AGGACAAGCTCCTACAAGGCAGGCAGTATTGGGTGCAG___GCTTACCTATTTCTACTCCATGTACCACCATAAACAAAGTTTGTGCTTCAGGAATGAAAGCCATCATGATGGCCTCTCAAAGTCTTATGTGTGGACATCAG|ATCAATAACCCGATCTTATTACCGCAACTCAGTTGGTGGATTTTTAGTATTTGACATTACTAACCGACGATCTTTTGAACATGTGAAAGATTGGCTAGAAGAAGCAAAAATGTATGTACAGCCATTTCGGATTGTATTTCTGCTAGTGGGACATAAATGTGATTTAGCTTCACAACGTCAAGTTACAAGGGAAGAAGCTGAAAAACTGTCAGCAGACTGTGGAATGAAGTATAT GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQ|innpillpqlswwifsi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12369 ACAT1::RAB39A ENSG00000075239.14::ENSG00000179331.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2162 TRUE 829 ACAT1 ENSG00000075239.14 protein_coding + + chr11:108116695-108147603:+ chr11:108134316:+ chr11:107987422-108018330:+ chr11:108005043:+ RAB39A ENSG00000179331.3 protein_coding + + chr11:107928448-107963482:+ chr11:107961946:+ chr11:107799174-107834208:+ chr11:107832672:+ chr11:108138905,chr11:108138898 chr11:107932143,chr11:107932131 NA NA chr11:108009632,chr11:108009625 chr11:107802869,chr11:107802857 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Thiolase__N-terminal_domain(27%)|Ras_family(60%) Thiolase_N(60%)|Arf(0%),Ras(0%),Roc(0%) 0 2 2 735 21 ENST00000672284.1 ENST00000320578.3 downstream upstream none CTTGGTTCCATTGCAATTCAGGGAGCCATTGAAAAGGCAG___GGATTCCAAAAGAAGAAGTGAAAGAAGCATACATGGGTAATGTTCTACAAGGAGGTGAAGGACAAGCTCCTACAAGGCAGGCAGTATTGGGTGCAG|ATCAATAACCCGATCTTATTACCGCAACTCAGTTGGTGGATTTTTAGTATTTGACATTACTAACCGACGATCTTTTGAACATGTGAAAGATTGGCTAGAAGAAGCAAAAATGTATGTACAGCCATTTCGGATTGTATTTCTGCTAGTGGGACATAAATGTGATTTAGCTTCACAACGTCAAG...CAGCAGACTGTGGAATGAAGTATATAGAAACCTCAGCAAAGGATGCTACAAATGTTGAAGAATCCTTCACAATCTTGACGAGAGACATATATGAACTTATT MGNVLQGGEGQAPTRQAVLGA|dq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12371 ZNF793::ENSG00000267360 ENSG00000188227.14::ENSG00000267360.6 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF793 ENSG00000188227.14 protein_coding + + chr19:37506939-37548762:+ chr19:37508403:+ chr19:37997841-38039664:+ chr19:37999305:+ ENSG00000267360 ENSG00000267360.6 protein_coding - + chr19:37093019-37210512:- chr19:37202688:+ chr19:37583921-37701414:- chr19:37693590:+ chr19:37515605,chr19:37515603 chr19:37180012,chr19:37180007 NA NA chr19:38006507,chr19:38006505 chr19:37670914,chr19:37670909 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 3 5 183 7 ENST00000587143.5 unknown downstream upstream mismatches(1) CGACCTTATACCGCGGTGAGGCGGCGTGGCAGGACGACCAATTTCAGATTCAGGGCGCGGATGCAGCATAAATGGGAAGGCACGGTTTGAGAAACG___GCTCTTTCTGGCAAAGGTAATGACATACGCATCTGTGCCAGCATCCCAAGAGTGAGGCTGGTTTCTGGAAATCCATTCTGACTCTGTGACAGCGGGGATGGATGTGACCTTGCCCGTGGTTAGAAAACAAATTTACTGA|GCTGGAGTACAATGACGCAATCTCAGCTCACTGCAACCTCCGCCACCTGgGTTCAGGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG___GTGGCCTCCAGAGAC...AACTCAGGTCAGAAAGCAAGCTGATCACAGTCCTCACCGACCACCATAGCTGACCCTACAGGCCCTCAGTCACTGACCACAGACTCCCGTCACTGACCCCCAAACCCCAATCACTCATCCCAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12372 RSU1::ZIM2-AS1 ENSG00000148484.18::ENSG00000269793.7 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ZIM2-AS1 ENSG00000269793.7 lncRNA + + chr19:56595313-56799602:+ chr19:56726823:+ chr19:57106681-57310970:+ chr19:57238191:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense unknown CDS/splice-site intron translocation high none Leucine_rich_repeat(100%)| LRR_4(100%),LRR_8(100%)| 1 1 6 988 10 ENST00000602389.1 unknown upstream upstream mismappers(1),mismatches(3) CTCTATCTAAGTGACAACGATTTTGAAATCCTGCCGCCAGATATTGGGAAGCTCACAAAGTTGCAGATA___CTCAGCCTTAGGGATAACGACCTGATCTCGCTGCCTAAGGAAATCGGGGAGCTTACCCAGCTTAAAGAGCTCCACATTCAGGGGAACCGCCTCACCGTTCTGCCCCCAGAACTAG|AGTCCTGCTCTTGTCGCCCAGGCACGACCTCAGTGTGGCATGATCATTCAGTGGCACATTCTCAGCTCACTGCAACCTCGAGATCGCTCAGTGGCACGAACTCGGCTCACTGCAGCCTCCGCCTCCCGGGTTCAAACGATTCTCCTGCCTCATCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCATCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCGAAC...CCTGACCTCAGGTGATCCACCCCCATCAGCCTCCCGAAGTGAAAAACCACAGTTTGTTTACCCATTATCCACTCCTCCCTTGATGGACACTTCAGTTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12374 ZNF582-DT::ZSCAN5A-AS1 ENSG00000267454.6::ENSG00000267549.6 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF582-DT ENSG00000267454.6 lncRNA + + chr19:56393656-56399172:+ chr19:56394441:+ chr19:56905025-56910541:+ chr19:56905810:+ ZSCAN5A-AS1 ENSG00000267549.6 lncRNA + + chr19:56314703-56365316:+ chr19:56363403:+ chr19:56826072-56876685:+ chr19:56874772:+ chr19:56396835,chr19:56396834,chr19:56396829 chr19:56361519,chr19:56361515,chr19:56361515 NA NA chr19:56908204,chr19:56908203,chr19:56908198 chr19:56872888,chr19:56872884,chr19:56872884 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 3 0 4 104 7 ENST00000587979.1 ENST00000651636.1 downstream upstream none GTTTTACCAGAAGGTTTCGAAGGAACCTTAAAGTTTGGAAGCGTAAGAGTTTATCTG___GCGGCTTTGGTGTCATCAAATGTGAGAAGCCCTGGACTTTACACATCCCGAGCCAGTGTGATCCAGTATGATTGGGAGTCCGAGTGCCAGATGCCGGTCAGGACCTGTTATGCTGGGTCTCAGAATGCGGAAACTCTCCCTGTCCGAGGTGGAACAGTTTGTCCTTGAGTGAGGACTGGAGTCCTGAGTGACTCTTTTGATTTGATCCTGTTTCCCTCAAACCTG|GACATAAGAGCCAGTGGAGTATTGCTATAAAGATATCTGAAAATGCAGAAGCAACTTCAAAACTGGGTAATGGGCAAAGATTGGAAGAGTTTGGAGGGCTCAGAAGAAGACAGGAAGATGAAAGAAGTTTGGAATTTCTTAGAGACTGTTAAGTGGTTGTGACCAAAATGCTAATAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12375 MIR3171HG::ENSG00000258081 ENSG00000258932.5::ENSG00000258081.4 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR3171HG ENSG00000258932.5 transcribed_processed_pseudogene - - chr14:27258717-27845286:- chr14:27845181:- chr14:27727923-28314492:- chr14:28314387:- ENSG00000258081 ENSG00000258081.4 lncRNA + - chr14:26599755-27295516:+ chr14:27220802:- chr14:27068961-27764722:+ chr14:27690008:- chr14:27395064,chr14:27395061,chr14:27395057 chr14:27229977,chr14:27229977,chr14:27229977 NA NA chr14:27864270,chr14:27864267,chr14:27864263 chr14:27699183,chr14:27699183,chr14:27699183 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 2 1 3 13 8 ENST00000555797.1 unknown upstream downstream none CGAGAATTCCAGCCCGCAGCGGGCGGGCTGGCGGTGCTGGGGAACCCGGCGCATCCTCCGCAGCTGCTGGCCCTGGGTGCTAAGCCCCTCACTGCCCGGGG...CCTCCACACCTCCCCACAAGCAGAAGGAGCCGGCTCCGGCCTTGGCCAGACCAGAGACAGGCTCCCACAGTGCAGCGGCGGGGCGAAGGGCTCCTCAAGCGCGGCCAGAGTGGACGCCGAGGCCGAGGAGGCACGGAGAGCGAGCAAGGGCTGCCTGCACGCTGTCACCTCTCATTAAG|CTTTGTTTGTGCGTTTTGTACAACTCTTTGTCCAAGATGACAAGAACCTGGACACCCTCCACCGGTGACATATTTTGGTGAGCCAGCCAGGAGGAAAAG___TCTTTCAGACGCTGATTCCTGGTAGCTCATCGGAAATTGAGGACAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12376 ZNF507::DLGAP1 ENSG00000168813.17::ENSG00000170579.19 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32360618:+ chr19:32836500-32878573:+ chr19:32851524:+ DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:4027991:- chr18:3496030-4455307:- chr18:4027991:- chr19:32362116,chr19:32362117 chr18:4128106,chr18:4128106 NA NA chr19:32853022,chr19:32853023 chr18:4128106,chr18:4128106 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Zinc_finger__C2H2_type(100%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) zf-C2H2(100%)|GKAP(100%) 1 1 3 211 4 ENST00000311921.8 unknown downstream downstream none AGAGAACAGCACAGTCTTCCAGATACCTTGTCAATAGCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG___GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG|GTGACACCACAACTGATTGGTTATCAAGGGCCATTTGAGGAAGACATGCTACTTAAGCAAAACCATCTTGAAGGCACCACAAAGAATGGTTTTAAGGAGCAGCTTAAGTGGAGTAAATCAAATTCAAGGTCAC...CAAATTATCTGAGTCACCATAATCTGAGGTGTTTTTTATGTTACATTTTGCTATCTCTCTGTTTTTGCAACAACAAAGTTCTAAGTTGATCTCAAATAAAT REQHSLPDTLSIATSNEPRISSDTADGKCVQEGNKSSVQKQYRCDVCDYTSTTYVGVRNHRRIHNSDKPYr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12377 ZNF850::CHST8 ENSG00000267041.6::ENSG00000124302.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF850 ENSG00000267041.6 protein_coding - - chr19:36714383-36772825:- chr19:36761643:- chr19:37205285-37263727:- chr19:37252545:- CHST8 ENSG00000124302.13 protein_coding + - chr19:33621953-33773509:+ chr19:33729936:- chr19:34112859-34264414:+ chr19:34220841:- chr19:36738192 chr19:33734338 NA NA chr19:37229094 chr19:34225243 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none KRAB_box(98%)| KRAB(6%)| 1 2 2 183 15 ENST00000589390.5 unknown upstream downstream none TGAGG___CTCTAACCATGGAATATTCGGAATGTCCCATTCTATGAAGGAGGTTTGCTGGCTGCAACAGGAATATTCATGAACATGGAG___GGGTTGGTCATGTTC...GAGTGCCTGGACGCTGCTCAGAAGGACTTATACAGAGATGTAATGATGGAGAACTACAGCAGCCTGGTCTCACTAG___GTCTCTCTATCCCAAAGCCTGATGT...TACTGGAGCAAGGGAAAGAGCCCTGGATGGTTTCAAGGGACGTGCTGGGAGGATGGTGCCGAG|ACTGTGAATTCCAGCAAAACTAGTTTGAAGACCCCACAGAAGATGGGGATCAGCCTGAGAACACAGGTTCTTCCTCTCACTGCCCCTGGCACTTCACCCTGCACTCTTCCACCAGTCGACAATCTCTATCCTTCAGCCCACTCCAAA LEQGKEPWMVSRDVLGGWCR|dcefqqn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12378 SCARA5::ELP3 ENSG00000168079.17::ENSG00000134014.18 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCARA5 ENSG00000168079.17 protein_coding - - chr8:27869883-27992673:- chr8:27909663:- chr8:27727400-27850190:- chr8:27767180:- ELP3 ENSG00000134014.18 protein_coding + - chr8:28089673-28191156:+ chr8:28156353:- chr8:27947190-28048673:+ chr8:28013870:- chr8:27907376 chr8:28160337 NA NA chr8:27764893 chr8:28017854 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Collagen_triple_helix_repeat_(20_copies)(38%)| Collagen(92%)| 1 1 2 179 8 ENST00000354914.8 unknown upstream downstream duplicates(1) GCGGTCACCGAGGACCTGCGCCTCAAGGACTGGGAGCACTCCATCGCACTGCGGAACATCTCCCTCGCGAAAG___GGCCACCGGGACCCAAAGGTGATCAGGGGGATGAAGGAAAGGAAGGCAGGCCTGGCATCCCTGGATTGCCTGGACTTCGAG|GATTCACGTCTCCTTTTCCTTCAGTCAATAACTGAATACCTAATACTTCAAAAGAAAAACTGTTTTTAAAAACTGGAGTGGG AVTEDLRLKDWEHSIALRNISLAKGPPGPKGDQGDEGKEGRPGIPGLPGLR|gftspfpsvnn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12379 ELP3::ENSG00000253397 ENSG00000134014.18::ENSG00000253397.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELP3 ENSG00000134014.18 protein_coding + + chr8:28089673-28191156:+ chr8:28158633:+ chr8:27947190-28048673:+ chr8:28016150:+ ENSG00000253397 ENSG00000253397.1 lncRNA + + chr8:27904481-27910310:+ chr8:27908990:+ chr8:27761998-27767827:+ chr8:27766507:+ chr8:28160337 chr8:27907376 NA NA chr8:28017854 chr8:27764893 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Acetyltransferase_(GNAT)_family(15%),Radical_SAM_C-terminal_domain(100%),Radical_SAM_superfamily(100%)| Acetyltransf_1(0%),Radical_SAM(100%),Radical_SAM_C(100%)| 1 2 1 268 12 ENST00000521015.5 ENST00000517735.1 downstream upstream none GTAACCTGAGAGAGCTGGCACTTGCAAGAATGAAAGACCTCGGAATACAG___TGTCGAGATGTGAGAACCAGAGAAGTTGGAATCCAAGAAATTCATCACAAAGTACGGCCATACCAG|AAGACAACAGTCTCCCAGCAAAATGTTGCAAGCAGCACAGGCTCAGGAATGGACAGACTGGCAGGCAAG___ACACAGCAAGAAGGCAGCAGTCTGCACACCAGGAGGAGAGTCCTCACCACAACTCAGC NLRELALARMKDLGIQCRDVRTREVGIQEIHHKVRPYQ|kttvsqqnvasstgsgmdrlagktqqegsslhtrrrvltttq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12384 TENT4A::LINC02196 ENSG00000112941.14::ENSG00000250974.4 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2164 TRUE 830 TENT4A ENSG00000112941.14 protein_coding + + chr5:6713432-6757044:+ chr5:6715119:+ chr5:6713545-6757157:+ chr5:6715232:+ LINC02196 ENSG00000250974.4 lncRNA + + chr5:6839460-7219291:+ chr5:7147681:+ chr5:6839573-7219404:+ chr5:7147794:+ chr5:6733731,chr5:6733731 chr5:7091210,chr5:7091208 NA NA chr5:6733844,chr5:6733844 chr5:7091323,chr5:7091321 NA NA sense sense unknown 5'UTR/splice-site intron deletion high none none none 0 2 1 10 59 ENST00000515721.1 unknown downstream upstream none ATCGACTCTCTACCCCTCCACCCCGCCTCCGGGCAAGTGAGGAACCCCTTGTCAAAGTGGGGCGTAGATAAGTGTGGAGTTTCACGTAAGTTAAGTTGCAG...AGGAACTCGAATCACGTCGAAG|GATCATGAAACAACAGATTAAAGACAAATAAATGATGACACTGAGCTGCAGGAAATACAAGGCAAAGAGAAAATGGCGAGGCCTTCAGCAGTCAAAGCCCTCCAGGCATG...AGGGAGCTGCAGAATTTTTGTGCTTTCTTGCTTCCGCAGTGAAAAATTTGTACATTTCTAATGCAATCAAACATAGACTGAGAGCTTTTTGCTGTCCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12385 TENT4A::LINC02196 ENSG00000112941.14::ENSG00000250974.4 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA TRUE 2164 TRUE 830 TENT4A ENSG00000112941.14 protein_coding + + chr5:6713432-6757044:+ chr5:6715119:+ chr5:6713545-6757157:+ chr5:6715232:+ LINC02196 ENSG00000250974.4 lncRNA + + chr5:6839460-7219291:+ chr5:7148768:+ chr5:6839573-7219404:+ chr5:7148881:+ chr5:6733731,chr5:6733731 chr5:7091210,chr5:7091208 NA NA chr5:6733844,chr5:6733844 chr5:7091323,chr5:7091321 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 10 54 ENST00000515721.1 ENST00000648809.1 downstream upstream none CTCGAATCACGTCGAAG|ACCCTATATCCTGAAGGTGGATCCAATGAAAAAAGAGAAGCAGCAAG___AGTGGCTTCTGTTTCCCTGGCTGGACTCTGAGTAATATAGCAGCAATAATTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12387 ENSG00000228714::DELEC1 ENSG00000228714.4::ENSG00000173077.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000228714 ENSG00000228714.4 lncRNA - - chr9:115324932-115744330:- chr9:115741462:- chr9:118087211-118506609:- chr9:118503741:- DELEC1 ENSG00000173077.16 lncRNA + - chr9:114850968-115402644:+ chr9:115246406:- chr9:117613248-118164923:+ chr9:118008685:- chr9:115365719,chr9:115364356 chr9:115365721,chr9:115364637 NA NA chr9:118127998,chr9:118126635 chr9:118128000,chr9:118126916 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 0 1 18 1 ENST00000646338.1 unknown upstream downstream none GATCTTCTCGGCTTAGCGGCTGAAGACTGACACTGCCCGATCGCCTCGGGAGCCCCCTAGACCATCATGGACGCCGAGCTTCCAGTAACTCTCACAGTGGA...GGGCAGCCCACCCTAAGGGAAGAATCATGGGAAAGAG___ATGGGGAACTGCGACATGAAGAAGTTAACTTACCTAAGATCcGAGAATGAGcCAAGGACAGAAC...ATCAAATTTAGAGAAACTTGAACTAT|CTCTGGCACTCTTCCAATCAACTATCAAGAAGAAAAGTGAGAGTGTAGGTTCCTCATCTTGACATCTTCTCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12397 LINC01301::CLVS1 ENSG00000251396.9::ENSG00000177182.11 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01301 ENSG00000251396.9 lncRNA - - chr8:60289928-60516815:- chr8:60468075:- chr8:61202487-61429374:- chr8:61380634:- CLVS1 ENSG00000177182.11 protein_coding + - chr8:61057158-61501645:+ chr8:61160109:- chr8:61969717-62414204:+ chr8:62072668:- chr8:60455492,chr8:60455494 chr8:61186170,chr8:61186169 NA NA chr8:61368051,chr8:61368053 chr8:62098729,chr8:62098728 NA NA sense antisense unknown exon intron duplication/5'-5' medium none none none 1 0 3 37 4 ENST00000476425.3 unknown upstream downstream duplicates(1),mismappers(1) CCCAGCTGTTGGCAGGAGACCTCGGTTCTTTGACTTCTCCGTAAGACTGT___ACGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCACGATCTCGGCT...CACAACCTCTGCCACCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTA|CAGCAGAGAAGCTCAGGCCAGAGAAGAAATGGAAATGCA...CACTTACAGTGAGCAGCAAGATCAAAAGTTTATCCTCAAGAAGTGTCAGCCACTTCTATCTGCAAAAGTCTAAGCCTGGGTGGAaAAGAACTATAAATACTTCTGAAGGCCTCCCACAAATTGCTGGAGAATGCACAGGAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12409 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- SDCCAG8 ENSG00000054282.16 protein_coding + - chr1:243256034-243500091:+ chr1:243448348:- chr1:243419336-243663393:+ chr1:243611650:- chr1:243538250,chr1:243538252 chr1:243484743,chr1:243484742 NA NA chr1:243701552,chr1:243701554 chr1:243648045,chr1:243648044 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none PH_domain(100%),Protein_kinase_domain(100%)| Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 2 1 0 288 5 ENST00000336199.9 unknown upstream downstream none CGGAAAGATTGTGTACCGTGATCTCAAG___TTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGATCA...AAACTTTTTGAATTAATATTAATGGAAGACATTAAAgTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAA...AAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|ATTCCTGAGAAGAACGGAACAACAGAAAATCCCTTTTCAGAGCTCATGAACTATAAAGAAAAGATGTTTACTCTCCTTGTTTGCTACAGCCAGATTTAGTAATGGACATAAC KEIMRHSFFSGVNWQDVYDKK|ipekngttenpfselmnykekmftllvcysqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 12415 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1215 TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61368327:+ chr17:58754814-59470199:+ chr17:59445688:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 300 302 300 5287 4969 ENST00000358791.9 ENST00000407086.8 downstream upstream duplicates(235),low_entropy(1),mismatches(96) CCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|GTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG___AACTTCAGCGAGAGGGAAG PGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|vpltga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12416 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61353588:+ chr17:58754814-59470199:+ chr17:59430949:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 20 17 300 5287 82 ENST00000358791.9 ENST00000585812.5 downstream upstream duplicates(52),low_entropy(1),mismatches(91) GCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|GGGTGTTGTGAGGATTCATGGAGCAAATGGCTGTGAAAGCACCTTGTAAAGGGTAGAGCAGTGTGCGGCGTGAGGGATTATTATCATTGTTAAGACGTCTACGCCTCGTTGCTCACCCTGTGTGATCCTGCAGCTTCTCAACTTTTCCCTCCTTTCTCCCTGGTTTCCACGCCTGGGCTGCTGAGTCAGGCGGACCGGCCAAGGCTGGCGAGGGCTGAACAGATGCTCTGACATGTCAAGGgAGGAAATGACAGTTCCCAGGCAGCCCTCTGTTTCAGGTGTGGAACAGGCTCCGAACACACTTTGTGTGATAAATTcTAGTAACGC NHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|gccedswskwl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12417 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61354362:+ chr17:58754814-59470199:+ chr17:59431723:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 4 19 300 5287 227 ENST00000358791.9 ENST00000588569.1 downstream upstream duplicates(53),mismatches(89) AGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|TGGACTCTTCCACCGCCCTTGAGTGGGGAACATCCAGGCCTTCACACTCACGCTCAGCCCATCACCCCTCTGTGCAAGGTGCAAGGTCCTCTGCCCACCTGAAGCCTCAAGGCCTGATGGAAACCATCCACAGCCACTCTA___GTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCT RPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|wtlppplsgehpglhthaqpitplckvqgplpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12418 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61391977:+ chr17:58754814-59470199:+ chr17:59469338:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 8 5 300 5287 14823 ENST00000358791.9 ENST00000407086.8 downstream upstream duplicates(37),mismatches(120) GCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAGGTACCAGCAACCTGCTTCTGACTGGCCAGCCCCCTCCCCTGCTGGAGGAGGGGAGAAGCCCCGCTCTGGTCCTACCCTTCAGTCTCTGCTCTTCCTTCATCAACCACCTTCCCCAAGCTTAGTGACAGCAGCCGC RNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|nfsereasrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12419 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61388618:+ chr17:58754814-59470199:+ chr17:59465979:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 2 0 300 5287 2110 ENST00000358791.9 ENST00000589222.5 downstream upstream duplicates(36),mismatches(120) GGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|GGAAAAAAAAAGGAAAAAAAAAACAATGCCAACAGCCCAGCGTCCGTGAGCAACCCAACAGTAACAAAGCATGCGTTCGGGATGGAGGAAG___AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCC GRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|gkkkekknnanspasvsnptvtkhafgmeeelqregsietlsnssgstsgsiprnfdgyrs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12420 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2168 TRUE 831 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61380506:+ chr17:58754814-59470199:+ chr17:59457867:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none none 0 1 300 5287 2499 ENST00000358791.9 ENST00000589222.5 downstream upstream duplicates(38),mismatches(114) CGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|ACACAGCCCTTGACGTAGCAGTAAAAACCTTCCCCCCTGAGAGACACGTGGCAGTGAAGTGTTTTG___GGAAAAAAAAAGGAAAAAAAAAACAATGCCAACAGCCCAGCGTCCGTGAGCAACCCAACAGTAACAAAGCATGCGTTCG...___AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAA GRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|tqplt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12422 ARFGEF2::SULF2 ENSG00000124198.10::ENSG00000196562.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1216 FALSE NA FALSE NA ARFGEF2 ENSG00000124198.10 protein_coding + + chr20:48921711-49036693:+ chr20:48922010:+ chr20:47538248-47653230:+ chr20:47538547:+ SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47736942:- chr20:46284941-46415360:- chr20:46365686:- chr20:48924107,chr20:48924108 chr20:47749815,chr20:47749814 NA NA chr20:47540644,chr20:47540645 chr20:46378559,chr20:46378558 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman Dimerisation_and_cyclophilin-binding_domain_of_Mon2(10%)|Sulfatase(95%),Sulfatase_protein(100%) DCB(0%)|DUF3740(100%),Sulfatase(74%) 182 295 170 480 3246 ENST00000371917.5 ENST00000698128.1 downstream downstream duplicates(72),mismappers(5),mismatches(17) GCCGGGCCCGCAGCCTAGCTCGCCATCTCGCTCACGCCGCCCGCCCGCGGGGCCGTCAGCCCCCGCCGGGCCGGGGCCATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGGTGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCG|GTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGGaCGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACcGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGAGAGCCGCACCTTTGCCGTGTACCTCAATAGCACTGGCTACCGGA MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVAL|gSMQVMNKTRRIMEQGGtHFINAFVTTPMCCPSRSSILTGKYVHNHNTYTNNENCSSPSWQAQHESRTFAVYLNSTGYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12423 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1217 TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59914703:+ chr17:57970407-58027935:+ chr17:57992064:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59921772 chr17:59838514 NA NA chr17:57999133 chr17:57915875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(14%)| PK_Tyr_Ser-Thr(8%),Pkinase(8%)| 157 142 248 4559 4405 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(61),mismatches(42) TGAACT___TGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAG___GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCtGGGAAGGAAAATTCCCTTTTCCAACCTGT ELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKK|GENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE|FALSE,FALSE,TRUE|FALSE,TRUE|FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE,TRUE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE|TRUE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12424 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 1218 TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59910611:+ chr17:57970407-58027935:+ chr17:57987972:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 30 122 124 4218 3431 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(29),mismatches(49),multimappers(2) CGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACT|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAAC RDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYEl|AVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|TRUE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12425 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59912804:+ chr17:57970407-58027935:+ chr17:57990165:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59921772 chr17:59838514 NA NA chr17:57999133 chr17:57915875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(5%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 7 3 156 5369 4405 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(8),mismatches(29) CGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACT___TGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCtGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAG AGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGK|GENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,TRUE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|TRUE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE,TRUE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE|TRUE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12428 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59910613:+ chr17:57970407-58027935:+ chr17:57987974:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839767:+ chr17:57784553-57919616:+ chr17:57917128:+ chr17:59921772 chr17:59838514 NA NA chr17:57999133 chr17:57915875 NA NA sense sense out-of-frame intron exon/splice-site duplication medium none none none 0 1 59 4218 4405 ENST00000225577.9 ENST00000592790.1 downstream upstream duplicates(6),mismatches(23) GGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTGT|GGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCtGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAAGCAGTTTAG EAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYEl|wektgcpgclkswslswcvtssylsltpwhkvmpnesssg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|TRUE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE|TRUE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12429 ZNF217::SULF2 ENSG00000171940.14::ENSG00000196562.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF217 ENSG00000171940.14 protein_coding - - chr20:53567071-53609907:- chr20:53593756:- chr20:52183610-52226446:- chr20:52210295:- SULF2 ENSG00000196562.16 protein_coding - + chr20:47656197-47786616:- chr20:47786405:+ chr20:46284941-46415360:- chr20:46415149:+ chr20:53583542,chr20:53583545 chr20:47786132,chr20:47786129 NA NA chr20:52200081,chr20:52200084 chr20:46414876,chr20:46414873 NA NA sense antisense unknown 5'UTR/splice-site 5'UTR inversion/5'-5' high none none none 5 300 127 568 2792 ENST00000371471.7 unknown upstream upstream duplicates(72),mismatches(21) CGAGTGGTGTCAGCTCAGTCCCGGCCGCCGCCGCGCGAGGAAATGGCCGAGGAGCCGGAGCCGCAG|GACTCGCCCCGGTCTGCAAACACTCGACTGCCTTTGCCGAAAGCCTCGCGCTCGCCTCCAGCCACACACATTTGCCATTGGAGAGGCCGGCGCCGGCCGCGACCCGCAGCTCAATCGCAGGGCAAACCGAGCTGCCTGTGCGCGCCCGAGAACTCCCCGAGAAATTAACTTCGGCTCAAGTGAAAATAGCAGCTGTTGTCCAGAAATGGCCCGGGAGTAGCATAGAAAGGAGAAACCGGCTTCCTCCGAAAGGGGAGGAATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12435 UBE2V1::TBX2-AS1 ENSG00000244687.13::ENSG00000267280.6 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBE2V1 ENSG00000244687.13 protein_coding - - chr20:50081124-50115959:- chr20:50113107:- chr20:48697661-48732496:- chr20:48729644:- TBX2-AS1 ENSG00000267280.6 lncRNA - - chr17:61393455-61411555:- chr17:61393747:- chr17:59470816-59488916:- chr17:59471108:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Ubiquitin-conjugating_enzyme(1%)| Lipid_desat(52%),UQ_con(7%)| 0 1 0 1624 342 ENST00000371674.8 ENST00000592009.1 upstream downstream duplicates(1),mismatches(1) GCAAGAGCGACGCAAGATGGCAGCCACCACGGGCTCGG|GTGCCCTGGCAGGAGGGACTGGCTTA?GCCACCCTGTGCAGGATCGTCTTCTCAGCTTACAGAGCCTAGTGTGATTCAACAACCCTCCATCTCTGCCCCCAACATGCCCAACTGATCTGGTGGAGGGAACTGAAGATGAAGGCCTCTCAGGC MAATTGS|galaggtgl?hpvqdrllslqslv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12436 TXLNG::SYAP1 ENSG00000086712.13::ENSG00000169895.6 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1220 FALSE NA FALSE NA TXLNG ENSG00000086712.13 protein_coding + + chrX:16786432-16844519:+ chrX:16786589:+ chrX:16804555-16862642:+ chrX:16804712:+ SYAP1 ENSG00000169895.6 protein_coding + + chrX:16719612-16765340:+ chrX:16735227:+ chrX:16737735-16783463:+ chrX:16753350:+ chrX:16795043 chrX:16730322 NA NA chrX:16813166 chrX:16748445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Myosin-like_coiled-coil_protein(0%)|BSD_domain__(100%) Taxilin(0%)|BSD(100%) 13 102 74 318 1558 ENST00000398155.4 ENST00000380155.4 downstream upstream duplicates(13),low_entropy(2),mismatches(8) CCGTCACCTCATGGCGACGCGGGTAGAGGAGGCAGCGCGGGGAAGAGGCGGCGGCGCCGAAGAGGCGACTGAGGCCGGACGGGGCGGACGGCGACGCAGCCCGCGGCAGAAG|ACTATTTATTTAACTTTGCATCTGCTGCCACAAAAAAGATAACTGAATCAGTTGCTGAAACAGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAG___ACAATTATAGGAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAGTCAG___AAGCAGCTGTGCCCCCATGGGTTGACACTAACGATGAAGAAACAATTCAAC MATRVEEAARGRGGGAEEATEAGRGGRRRSPRQK|tiyltlhllpqkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12440 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1223 TRUE 2172 TRUE 833 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60638750:- chr5:59892739-59996017:- chr5:59934577:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60757645:- chr5:60047618-60140101:- chr5:60053472:- chr5:60633807,chr5:60633809,chr5:60633812 chr5:60761655,chr5:60761656,chr5:60761657 NA NA chr5:59929634,chr5:59929636,chr5:59929639 chr5:60057482,chr5:60057483,chr5:60057484 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%),RhoGAP_domain(40%)|GNS1/SUR4_family(41%) DEP(100%),RhoGAP(0%)|ELO(17%) 47 16 75 235 128 ENST00000265036.10 ENST00000425382.5 upstream downstream duplicates(6),mismatches(2) CGTCAAACTTGTCAATTCGAAGTTCATCATCCATAATGTATATAGTGTTAGCAAGCAGGGAGTTGTTATTCTTGATGACAAGTCAA___AAGAACTTCCTCATTGGGTGCTGTCAGCTATGAAGTGTTTGGCAAATT___GGCCCAACTGTTCTGATTTGAAGCAGCCTATGTACTTGGGATTTGAAAAAGATGTCTTTAAAACCATAGCTGATTACTATGGTCACTTGAAAGAGCCTCTACTTACATTTCATCTTTTTGATGCTTTTGTCAGTGTACTGG|GTGGTTTGGGAACATTCCATGCCCTTCTAAATACAGCTGTACATGTAGTCATGTATTCCTACTATGGACTTTCTGCATTGGGGCCAGCCTACCAGAAGTATTTGTGGTGGAAAAAATATTTGACATCATTACAGCTT___GTCCAGTTTGTTATTGTCGCCATCCACATAAGCCAGTTCTTTTTCATGGAGGATTGCAAGTATCAGTTTCCAGTCTTTGCGTGC VKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVL|gGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12441 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2172 TRUE 833 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60642812:- chr5:59892739-59996017:- chr5:59938639:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60757645:- chr5:60047618-60140101:- chr5:60053472:- chr5:60633807,chr5:60633809,chr5:60633812 chr5:60761655,chr5:60761656,chr5:60761657 NA NA chr5:59929634,chr5:59929636,chr5:59929639 chr5:60057482,chr5:60057483,chr5:60057484 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%)|GNS1/SUR4_family(41%) DEP(100%)|ELO(17%) 1 0 19 305 128 ENST00000265036.10 ENST00000425382.5 upstream downstream mismatches(1) CTTAGAAGAAGTTTTAGACGTCAAACTTGTCAATTCGAAGTTCATCATCCATAATGTATATAGTGTTAGCAAGCAGGGAGTTGTTATTCTTGATGACAAGTCAA___AAGAACTTCCTCATTGGGTGCTGTCAGCTATGAAGTGTTTGGCAAATT|GTGGTTTGGGAACATTCCATGCCCTTCTAAATACAGCTGTACATGTAGTCATGTATTCCTACTATGGACTTTCTGCATTGGGGCCAGCCTACCAGAAGTATTTGTGGTGGAAAAAATATTTGACATCATTACAGCTT___GTCCAGTTTGTTATTGTCGCCATCCACATAAGCCAGTTCTTTTTCATGGAGGATTGCAAGTATCAGTTTCCAGTCTTTGCGTGCATCATTATGAGT LEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLAN|cGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12442 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2172 TRUE 833 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60757645:- chr5:60047618-60140101:- chr5:60053472:- chr5:60633807,chr5:60633809,chr5:60633812 chr5:60761655,chr5:60761656,chr5:60761657 NA NA chr5:59929634,chr5:59929636,chr5:59929639 chr5:60057482,chr5:60057483,chr5:60057484 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(98%)|GNS1/SUR4_family(41%) DEP(0%)|ELO(17%) 0 1 1 350 128 ENST00000265036.10 ENST00000425382.5 upstream downstream none TCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTGAGGAAGATTTTGAAGACAATCGTCACTTATACAG|GTGGTTTGGGAACATTCCATGCCCTTCTAAATACAGCTGTACATGTAGTCATGTATTCCTACTATGGACTT...AGCCTACCAGAAGTATTTGTGGTGGAAAAAATATTTGACATCATTACAGCTT___GTCCAGTTTGTTATTGTCGCCATCCACATAAGCCAGTTCTTTTTCATGG QLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYr|wfgnipcpskysctcshvfllwt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12443 PAPOLA::AK7 ENSG00000090060.19::ENSG00000140057.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1224 TRUE 2173 TRUE 834 PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ AK7 ENSG00000140057.9 protein_coding + + chr14:96392128-96489427:+ chr14:96437835:+ chr14:96858465-96955764:+ chr14:96904172:+ chr14:96515170,chr14:96515164,chr14:96515169 chr14:96428717,chr14:96428715,chr14:96428715 NA NA chr14:96981507,chr14:96981501,chr14:96981506 chr14:96895054,chr14:96895052,chr14:96895052 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Adenylate_kinase(100%),Dpy-30_motif(100%) |ADK(100%),Dpy-30(100%) 12 89 23 857 205 ENST00000216277.13 ENST00000267584.9 downstream upstream duplicates(4),mismatches(23) AAGCGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|GCCAGAAAATTTGCAGCATACGTAGTTGCTGCTGGACTCCAGTATGGAGCGGAAGGAGGCATGTTACACACATTTTTTAAG___ATGGCTTGGTTGGGCGAGATTCCTGCATTACCAGTTTTTGGCGATGGAACAAATGTAATTCCAACAATCCATGTTCTTGATCTAGCAGG___AGTGATACAAAACGTCATAGATCACGTGCCAAAGCCTCACTACCTGGTTGCTGTGGATGAGTCTGTTCATACCCTGGAAGACATAGTCAAG___TGTATCAGTAAA MPl|penlqht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact TRUE Lung adenocarcinoma LUNG no_match 97022750 FALSE 96904172 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12444 PAPOLA::AK7 ENSG00000090060.19::ENSG00000140057.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2173 TRUE 834 PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ AK7 ENSG00000140057.9 protein_coding + + chr14:96392128-96489427:+ chr14:96449802:+ chr14:96858465-96955764:+ chr14:96916139:+ chr14:96515170,chr14:96515164,chr14:96515169 chr14:96428717,chr14:96428715,chr14:96428715 NA NA chr14:96981507,chr14:96981501,chr14:96981506 chr14:96895054,chr14:96895052,chr14:96895052 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Adenylate_kinase(100%),Dpy-30_motif(100%) |ADK(100%),Dpy-30(100%) 0 1 3 857 181 ENST00000216277.13 ENST00000267584.9 downstream upstream mismatches(1) CGCTTAAAGCGGCGGGAGCGGTGCGGGAGAGGGGTTGGACCCAGGGCTGAGGCAGGCCCCCCCCTCCCTCCCGCCTCAGTGGATCATGCCCAGGGCGGCAGCGGCGGCGGTTGCGGGGGGGAAGTGACTGGGCGGTGCCGGCGCCGGAGACGATGCCGTT|TGTATCAtTAAAAATACTGGCCCTGGtAAAATattGcAAATACCCAGAGAAAATGCATACCTAACCAAGGACTTAACG___CAAGATTGTCTTGACCATTTACTGGTCAACTTAAGAATGGAAGCGCTCTTTGTGAAGGAGAATTTTAATATTCG...TATTTTGGATGGATTCCCAAAGACCTATGATCAAGCAAAAGACCTGTTCAATC___AGGAAGATGAGGAGGAGGAAGATGATGTCAGAGGCAGAATGTTTCCC MPf|vslkilalvkyckypekmht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact TRUE Lung adenocarcinoma LUNG no_match 97022750 FALSE 96904172 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12445 SMARCA4::CARM1 ENSG00000127616.22::ENSG00000142453.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1225 TRUE 2174 TRUE 835 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10986593:+ chr19:11071608-11190102:+ chr19:11097269:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10904951:+ chr19:10982229-11033751:+ chr19:11015627:+ chr19:10987004,chr19:10987000 chr19:10890371,chr19:10890364 NA NA chr19:11097680,chr19:11097676 chr19:11001047,chr19:11001040 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none QLQ(100%)|Coactivator-associated_arginine_methyltransferase_1_N_terminal(58%),Ribosomal_protein_L11_methyltransferase_(PrmA)(100%) QLQ(100%)|CARM1(8%),MTS(100%),Methyltransf_11(100%),Methyltransf_25(100%),Methyltransf_9(100%),PRMT5(100%),PrmA(100%) 30 29 62 419 286 ENST00000644737.1 ENST00000327064.9 downstream upstream duplicates(5),mismatches(4) CCCAGGCCTTGGGGCAGCAGAACCGGGGCCCAACCCCATTTAACCAGAACCAGCTGCACCAGCTCAGAGCTCAGATCATGGCCTACAAGATGCTGGCCAGGGGGCAGCCCCTCCCCGACCACCTGCAGATGGCGGTGCAGGGCAAGCGGCCGATGCCCGGGATGCAGCAGCAGATGCCAACGCTACCTCCACCCTCGGTGTCCGCAACAGGACCCGGCCCTGGCCCTGGCCCTGGCCCCGGCCCGGGTCCCGGCCCGGCACCTCCAAATTACAGCAGGCCTCATG|ATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCGTGTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACG___ATTTCTGTTCCTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAGCGGACGGAGG QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPH|dEDVCVFKCSVSRETECSRVGKQSFIITLGCNSVLIQFATPNDFCSFYNILKTCRGHTLERSVFSERTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach,Ovary,Lung,Uterus_cervix,Bladder,Brain exact TRUE Breast invasive carcinoma,Stomach adenocarcinoma BREAST,STOMACH exact 11097679,11100119|11100119 FALSE,FALSE|FALSE 11024553,11022860|11024553 FALSE,FALSE|FALSE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12446 SMARCA4::CARM1 ENSG00000127616.22::ENSG00000142453.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2174 TRUE 835 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10961174:+ chr19:11071608-11190102:+ chr19:11071850:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10904951:+ chr19:10982229-11033751:+ chr19:11015627:+ chr19:10987004,chr19:10987000 chr19:10890371,chr19:10890364 NA NA chr19:11097680,chr19:11097676 chr19:11001047,chr19:11001040 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Coactivator-associated_arginine_methyltransferase_1_N_terminal(58%),Ribosomal_protein_L11_methyltransferase_(PrmA)(100%) |CARM1(8%),MTS(100%),Methyltransf_11(100%),Methyltransf_25(100%),Methyltransf_9(100%),PRMT5(100%),PrmA(100%) 1 3 1 455 286 ENST00000644737.1 ENST00000327064.9 downstream upstream none CTCGTTTGGCGGCGGCGGCGGCTTCTTTGTTTCGTGAAGAGAAGCGAGACGCCCATTCTGCCCCCGGCCCCGCGCGGAGGGGCGGGGGAGGCGCCGGGAAGTCGACGGCGCCGGCGGCTCCTG|ATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCGTGTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACG___ATTTCTGTTCCTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAGCGGACGGAGGAGTCTTCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach,Ovary,Lung,Uterus_cervix,Bladder,Brain exact TRUE Breast invasive carcinoma,Stomach adenocarcinoma BREAST,STOMACH exact 11097679,11100119|11100119 FALSE,FALSE|FALSE 11024553,11022860|11024553 FALSE,FALSE|FALSE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12447 SMARCA4::CARM1 ENSG00000127616.22::ENSG00000142453.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2174 TRUE 835 SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10984373:+ chr19:11071608-11190102:+ chr19:11095049:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10904951:+ chr19:10982229-11033751:+ chr19:11015627:+ chr19:10987004,chr19:10987000 chr19:10890371,chr19:10890364 NA NA chr19:11097680,chr19:11097676 chr19:11001047,chr19:11001040 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Coactivator-associated_arginine_methyltransferase_1_N_terminal(58%),Ribosomal_protein_L11_methyltransferase_(PrmA)(100%) |CARM1(8%),MTS(100%),Methyltransf_11(100%),Methyltransf_25(100%),Methyltransf_9(100%),PRMT5(100%),PrmA(100%) 0 1 1 353 286 ENST00000644737.1 ENST00000327064.9 downstream upstream none CAGGACACCCCATCCCCACCCAGGGGCCTGGAGGGTACCCTCAGGACAACATGCACCAGATGCACAAG|ATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCGTGTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACG___ATTTCT GHPIPTQGPGGYPQDNMHQMHK|mkmcvslsaqcperqsaavwasspssspwaatasssssphpti NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach,Ovary,Lung,Uterus_cervix,Bladder,Brain exact TRUE Breast invasive carcinoma,Stomach adenocarcinoma BREAST,STOMACH exact 11097679,11100119|11100119 FALSE,FALSE|FALSE 11024553,11022860|11024553 FALSE,FALSE|FALSE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12448 USP32::PPM1D ENSG00000170832.13::ENSG00000170836.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60265412:- chr17:58254688-58499831:- chr17:58342773:- PPM1D ENSG00000170836.13 protein_coding + - chr17:60600193-60666280:+ chr17:60602618:- chr17:58677554-58743641:+ chr17:58679979:- chr17:60265269 chr17:60606300 NA NA chr17:58342630 chr17:58683661 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none EF_hand(100%)| EF-hand_5(100%)| 38 22 51 1523 65 ENST00000300896.9 unknown upstream downstream duplicates(6),mismatches(1) ATTGATCTTGAGAAACGCTATTGGTTATTGAAGGCTCAATCCCGGACTGGACGATTTGATTTAGAGACATTTGGCCCATTGGTTTCACCACCTATTCGTCCATCTCTAAGTGAAG___GTTTGTTTAATGCTTTTGATGAAAATCGTGACAATCACATAGATTTTAAGGAGATATCCTGTGGGTTATCAGCCTGTTGCAGGGGACCCCTGGCTGAAAGACAAAAAT___TTTGCTTCAAGGTATTTGATGTTGACCGTGATGGAGTTCTCTCCAGGGTTGAACTGAGAGACATGGTGGTTGCACTTTTAGAAGTCTGGAAGGACAACCGCACTGATGATATTCCT___GAATTACATATGGATCTCTCTGATATTGTAGAAGGCATACTGAATGCACATGACACCACAAAG|CATGGCCCCTGCTTTATTAAAAAATGTTCCTGAAGGTCCGGCAGGGTAGCTCACGCCTGTAATTCCAGCACTTTCGGAGGCCGAGGAGGAAGGATCGCTTGAGCCCAGGATCGCTTGTTGCCCAGCCTGGGCAACAAAGTAAGGCGGCCCACACCCGTCCCCCGCCCCTGCCCGTCTCTTAAAAAAAAAAAAATTTAATACTAATGTAACGGAGTTTATACCTTAAAGATTTTTTATCCTTAAAGTTCAAACATATGGCA IDLEKRYWLLKAQSRTGRFDLETFGPLVSPPIRPSLSEGLFNAFDENRDNHIDFKEISCGLSACCRGPLAERQKFCFKVFDVDRDGVLSRVELRDMVVALLEVWKDNRTDDIPELHMDLSDIVEGILNAHDTTK|hgpcfikkcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12449 ADAMTS19::SLC27A6 ENSG00000145808.10::ENSG00000113396.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1226 TRUE 2175 TRUE 836 ADAMTS19 ENSG00000145808.10 protein_coding + + chr5:129460281-129738683:+ chr5:129461757:+ chr5:128795974-129074376:+ chr5:128797450:+ SLC27A6 ENSG00000113396.13 protein_coding + + chr5:128538013-129033642:+ chr5:129028345:+ chr5:127873706-128369335:+ chr5:128364038:+ chr5:129500568,chr5:129500565 chr5:129028072,chr5:129028066 NA NA chr5:128836261,chr5:128836258 chr5:128363765,chr5:128363759 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Reprolysin_family_propeptide(73%)|AMP-binding_enzyme(0%),AMP-binding_enzyme_C-terminal_domain(100%) Pep_M12B_propep(0%)|AMP-binding(0%),AMP-binding_C(100%) 6 18 76 96 153 ENST00000274487.9 ENST00000262462.9 downstream upstream duplicates(8),mismatches(4) CCGGATGGCGACGAAGTGTTGCTGCGGATCCCGGCCTTCTCTCGGGACCTGTACCTGCTGCTCCGGAGAGACGGCCGCTTCCTGGCGCCGCGCTTCGCAGTGGAACAGCGGCCAAATCCCGGCCCCGGCCCCACGGGGGCAGCATCCGCCCCGCAACCTCCCGCGCCACCAGACGCAGGCTGCTTCTACACCGGAGCTGTGCTGCGGCACCCTGGCTCGCTGGCTTCTTTCAGCACCTGTGGAGGTGGCCTG|ATGGAAAGGAGAAAATGTCGCAACCACTGAGGTTGCTGATGTTATTGGAATGTTGGATTTCATACAGGAAGCAAACGTCTATGGTGTGGCTATATCAG___GTTATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACCAAATACATCTTTAGATTTGGAAAAAGTTTATGAACAAGTTGTAACATTTCT PDGDEVLLRIPAFSRDLYLLLRRDGRFLAPRFAVEQRPNPGPGPTGAASAPQPPAPPDAGCFYTGAVLRHPGSLASFSTCGGGL|merrkcrnh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12450 ADAMTS19::SLC27A6 ENSG00000145808.10::ENSG00000113396.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1227 TRUE 2175 TRUE 836 ADAMTS19 ENSG00000145808.10 protein_coding + + chr5:129460281-129738683:+ chr5:129460482:+ chr5:128795974-129074376:+ chr5:128796175:+ SLC27A6 ENSG00000113396.13 protein_coding + + chr5:128538013-129033642:+ chr5:129028345:+ chr5:127873706-128369335:+ chr5:128364038:+ chr5:129500568,chr5:129500565 chr5:129028072,chr5:129028066 NA NA chr5:128836261,chr5:128836258 chr5:128363765,chr5:128363759 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |AMP-binding_enzyme(0%),AMP-binding_enzyme_C-terminal_domain(100%) |AMP-binding(0%),AMP-binding_C(100%) 12 14 50 237 153 ENST00000505791.5 ENST00000262462.9 downstream upstream duplicates(5),low_entropy(2),mismatches(6) GGGCAAATTCGCCGCCCGGCCTCCTAGCGCTCCGGGGAGGCCGCTGCGCCCCGGAGTGGATCGCGCTGGAGGCGTGCGCCGGGCGAGAAGCCGCGGCCGCGGGAGCGCAGTATGGGGAAGAACCGCGAGATGCGCCTGACTCACATCTGCTGCTGCTGCCTCCTTTACCAGCTGGGGTTCCTGTCGAATGGGATCGTTTCAG|ATGGAAAGGAGAAAATGTCGCAACCACTGAGGTTGCTGATGTTATTGGAATGTTGGATTTCATACAGGAAGCAAACGTCTATGGTGTGGCTATATCAG___GTTATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACCAAATACATCTTTAGATTTGGAAAAA MGKNREMRLTHICCCCLLYQLGFLSNGIVS|dgkekmsqplrllmllecwisyrkqtsmvwlyqvmkeeqewlllf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12451 RPS6KB1::DIAPH3 ENSG00000108443.14::ENSG00000139734.19 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2176 TRUE 837 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930174:+ chr17:57970407-58027935:+ chr17:58007535:+ DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:59666846:- chr13:60239717-60738062:- chr13:60240980:- chr17:59930690,chr17:59930685 chr13:59746800,chr13:59746801 NA NA chr17:58008051,chr17:58008046 chr13:60320934,chr13:60320935 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site translocation high none Protein_kinase_domain(40%)| PK_Tyr_Ser-Thr(74%),Pkinase(73%)| 39 33 22 2935 188 ENST00000225577.9 ENST00000400324.9 downstream downstream duplicates(8),mismatches(7) GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG___GCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTG___GAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTG|AAAATCAGAAAGTGCAGTTGACAGAAGGGTCACGTTCACACTACAATATCAATTGCAACTCAACAAGGACTCCAGTCGCCAAGGAGCTTAATTATAATCTAGACACTCATACGTCTACTGGGAGGATCAAGGCAGCTGAGAAGAAGGAAGCGTGTAATGTAGAAAGCAACAGAAAAAAGGAAACGGAACTTCTTGGCTCTTTTTCTAAAAATGAATCAGTTCCCGAAGTTGAAGCCCTGCTGGCAAGATTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12452 RPS6KB1::DIAPH3 ENSG00000108443.14::ENSG00000139734.19 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2176 TRUE 837 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930432:+ chr17:57970407-58027935:+ chr17:58007793:+ DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:59666846:- chr13:60239717-60738062:- chr13:60240980:- chr17:59930690,chr17:59930685 chr13:59746800,chr13:59746801 NA NA chr17:58008051,chr17:58008046 chr13:60320934,chr13:60320935 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation medium none Protein_kinase_domain(40%)| PK_Tyr_Ser-Thr(75%),Pkinase(74%)| 2 0 24 243 188 ENST00000489824.1 ENST00000400324.9 downstream downstream duplicates(2) TTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACT___TGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCC...GAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTG___GCTTGAGTGGAACGCTCTTCACACCAGTTGTTCCTAACAGAACCATTCTCATTGCGGCTTTCTTTCCTTGAATTG|AAAATCAGAAAGTGCAGTTGACAGAAGGGTCACGTTCACACTACAATATCAATTGCAACTCAACAAGGACTCCAGTCGCCAAGGAGCTTAATTATAATCTAGACACTCATACGTCTACTGGGAGGATCAAGGCAGCTGAGAAGAAGGAAGCGTGTAATGTAGAAAGCAACAGAAAAAAGGAAACGGAACTTCTTGGCTCTTTTTCTAAAAATGAATCAGTTCCCGAAGTTGAAGCCCTGCTGGCAAGATTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12453 POP1::MATN2 ENSG00000104356.11::ENSG00000132561.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1228 TRUE 2177 TRUE 838 POP1 ENSG00000104356.11 protein_coding + + chr8:98117293-98159835:+ chr8:98117390:+ chr8:99129521-99172063:+ chr8:99129618:+ MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:98030462:+ chr8:98881068-99048952:+ chr8:99042690:+ chr8:98120860,chr8:98120860,chr8:98120861 chr8:98030182,chr8:98030171,chr8:98030169 NA NA chr8:99133088,chr8:99133088,chr8:99133089 chr8:99042410,chr8:99042399,chr8:99042397 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Trimeric_coiled-coil_oligomerisation_domain_of_matrilin(100%),von_Willebrand_factor_type_A_domain(12%) |Matrilin_ccoil(100%),VWA(3%) 1 90 1 253 245 ENST00000401707.7 ENST00000254898.7 downstream upstream duplicates(8),mismappers(1),mismatches(2) GGAGCTTTGGCTCGGTGGGTACTGTCGCGGAGGCTTGTCATTCTGACCCGGGGATTCCTCACAGCGTCTGGCAG|GTATCACTATGTATGCTGTTGGGGTAGGAAAAGCCATTGAGGAGGAACTACAAGAGATTGCCTCTGAGCCCACAAACAAGCATCTCTTCTATGCCGAAGACTTCAGCACAATGGATGAGATAAGTGAAAAACTCAAGAAAGGCATCTGTGAAG___CTCTAGAAGACTCCGATGGAAGACAGGACTCTCCAGCAGGGGAACTGCCAAAAACGGTCCAACAGCCAACAG___AATCTGAGCCAGTCACCATAAATATCCAAGACCTACTTTCCTGTTCTAATTTTGCAGTGCAACACAGATATCTGTTTGAAGAAGACAATCTTTTACGGTCTACACAAAAGCTTTCCCATTCAACAAAACCTTCAG___GAAGCCCTTTGGAAGAAAAACACGATCAATGCAAATGTGAAAACCTTATAATGTTCCAGAACCTTGCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12454 POP1::MATN2 ENSG00000104356.11::ENSG00000132561.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2177 TRUE 838 POP1 ENSG00000104356.11 protein_coding + + chr8:98117293-98159835:+ chr8:98117865:+ chr8:99129521-99172063:+ chr8:99130093:+ MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:98030462:+ chr8:98881068-99048952:+ chr8:99042690:+ chr8:98120860,chr8:98120860,chr8:98120861 chr8:98030182,chr8:98030171,chr8:98030169 NA NA chr8:99133088,chr8:99133088,chr8:99133089 chr8:99042410,chr8:99042399,chr8:99042397 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Trimeric_coiled-coil_oligomerisation_domain_of_matrilin(100%),von_Willebrand_factor_type_A_domain(12%) |Matrilin_ccoil(100%),VWA(3%) 0 2 2 7 245 ENST00000401707.7 ENST00000521689.5 downstream upstream duplicates(1) GCGGAGGCTTGTCATTCTGACCCGGGGATTCCTCACAGCGTCTGGCAG___GGTGCTCCTCGGGCTTTACAAGGTCACTGTCTGAACAGAGCCCTAGTGATTGG...CAGAAAGAAAGATGGTGATCTGGAATGGCCCAGATCCCTT|GTATCACTATGTATGCTGTTGGGGTAGGAAAAGCCATTGAGGAGGAACTACAAGAGATTGCCTCTGAGCCCACAAACAAGCATCTCTTCTATGCCGAAGACTTCAGCACAATGGATGAGATAAGTGAAAAACTCAAGAAAGGCATCTGTGAAG___CTCTAGAAGACTCC...TTTACGGTCTACACAAAAGCTTTCCCATTCAACAAAACCTTCAG___GAAGCCCTTTGGAAGAAAAACACGATCAATGCAAATGTGAAAACCTTATAATGTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12457 MYO9B::FCHO1 ENSG00000099331.14::ENSG00000130475.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1231 TRUE 2179 TRUE 839 MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17102557:+ chr19:17186587-17325346:+ chr19:17213367:+ FCHO1 ENSG00000130475.16 protein_coding + + chr19:17747718-17788568:+ chr19:17770425:+ chr19:17858527-17899377:+ chr19:17881234:+ chr19:17115583,chr19:17115582 chr19:17769208,chr19:17769204 NA NA chr19:17226393,chr19:17226392 chr19:17880017,chr19:17880013 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Myosin_head_(motor_domain)(19%),Ras_association_(RalGDS/AF-6)_domain(100%)|Muniscin_C-terminal_mu_homology_domain(100%) Myosin_head(0%),RA(100%)|muHD(100%) 7 15 53 137 55 ENST00000595618.5 ENST00000594202.6 downstream upstream duplicates(3),low_entropy(1),mismatches(1) CGTGAAGATGTATGAGAACCAGCAGCTGGGCAAGCTGGAGCCACACGTCTTCGCGCTGGCCGACGTGGCCTACTACACCATGCTCAGGAAGCGCGTGAACCAGTGCATCGTGATCTCGGGTGAGAGCGGCTCCGGCAAGACCCAGAGCACCAACTTCCTCATCCACTGCCTCACCGCCCTCAGCCAGAAGGGCTACGCCAGCGGCGTCGAGAGGACCATCCTGGGTGCTGGCCCTGTGCTGGAG|TGCAAGGAGGAAGTGGTGAGCACCTTGGATGCTGTGCAGGTACTCTCGGGCGTCAGCCAGCTCCTGCCCAAGTCCCGCGAGAACTACCTGAACCGTTGCATGGACCAGGAGCGGCTGCGGAGGGAGAGTACCAGCCAGAAGGAGATGGACAAG___GCGGAGACTAAAACCAAGAAGGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAA VKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAGPVLE|CKEEVVSTLDAVQVLSGVSQLLPKSRENYLNRCMDQERLRRESTSQKEMDKAETKTKKAAESLRRSVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12458 MYO9B::FCHO1 ENSG00000099331.14::ENSG00000130475.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2179 TRUE 839 MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17102557:+ chr19:17186587-17325346:+ chr19:17213367:+ FCHO1 ENSG00000130475.16 protein_coding + + chr19:17747718-17788568:+ chr19:17770792:+ chr19:17858527-17899377:+ chr19:17881601:+ chr19:17115583,chr19:17115582 chr19:17769208,chr19:17769204 NA NA chr19:17226393,chr19:17226392 chr19:17880017,chr19:17880013 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Myosin_head_(motor_domain)(19%),Ras_association_(RalGDS/AF-6)_domain(100%)|Muniscin_C-terminal_mu_homology_domain(100%) Myosin_head(0%),RA(100%)|muHD(100%) 2 0 19 137 64 ENST00000595618.5 ENST00000594202.6 downstream upstream mismatches(1) CTTCCTGCTGCAGGAGCGCAACGCAGATGGAACCATCAAGTACGTGCATATGCAGCTGGTGGCGCAGGCCACAGCCACCCGGCGCCTAGTGGAGCGTGGCC...CTCAAGCACCGCTTCCTGCAACAAAAGATCTACACGTACGCGGGGAGCATCCTGGTGGCCATCAACCCCTTTAcGTTCCTGCCCATCTACAACCCCAAGTACGTGAAGATGTATGAGAACCAGCAGCTGGGCAAGCTGGAGCCACACGTCTTCGCGCTGGCCGACGTGGCCTACTACACCATGCTCAGGAAGCGCGTGAACCAGTGCATCGTGATCTCGGGTGAGAGCGGCTCCGGCAAGACCCAGAGCACCAACTTCCTCATCCACTGCCTCACCGCCCTCAGCCAGAAGGGCTACGCCAGCGGCGTCGAGAGGACCATCCTGGGTGCTGGCCCTGTGCTGGAG|GCGGAGACTAAAACCAAGAAGGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAAAATACAACTCAGCCCGAGCTGACTTTGAGCAGAAGATGCTGGACTCAGCCCTG___CGCTTCCAAGCCATGGAGGAGACACACCTGAGGCACATGAAGGCACTGCTGGGCTCATATGCTCACTCGGTGGAGGACACGCACGTGCAG LKHRFLQQKIYTYAGSILVAINPFtFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAGPVLE|AETKTKKAAESLRRSVEKYNSARADFEQKMLDSALRFQAMEETHLRHMKALLGSYAHSVEDTHV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12459 MYO9B::FCHO1 ENSG00000099331.14::ENSG00000130475.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2179 TRUE 839 MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17102557:+ chr19:17186587-17325346:+ chr19:17213367:+ FCHO1 ENSG00000130475.16 protein_coding + + chr19:17747718-17788568:+ chr19:17770464:+ chr19:17858527-17899377:+ chr19:17881273:+ chr19:17115583,chr19:17115582 chr19:17769208,chr19:17769204 NA NA chr19:17226393,chr19:17226392 chr19:17880017,chr19:17880013 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Myosin_head_(motor_domain)(19%),Ras_association_(RalGDS/AF-6)_domain(100%)|Muniscin_C-terminal_mu_homology_domain(100%) Myosin_head(0%),RA(100%)|muHD(100%) 1 0 38 137 66 ENST00000595618.5 ENST00000699202.1 downstream upstream duplicates(2),mismatches(1) CTACAACCCCAAGTACGTGAAGATGTATGAGAACCAGCAGCTGGGCAAGCTGGAGCCACACGTCTTCGCGCTGGCCGACGTGGCCTACTACACCATGCTCAGGAAGCGCGTGAACCAGTGCATCGTGATCTCGGGTGAGAGCGGCTCCGGCAAGACCCAGAGCACCAACTTCCTCATCCACTGCCTCACCGCCCTCAGCCAGAAGGGCTACGCCAGCGGCGTCGAGAGGACCATCCTGGGTGCTGGCCCTGTGCTGGAG|GTACTCTCGGGCGTCAGCCAGCTCCTGCCCAAGTCCCGCGAGAACTACCTGAACCGTTGCATGGACCAGGAGCGGCTGCGGAGGGAGAGTACCAGCCAGAAGGAGATGGACAAG___GCGGAGACTAAAACCAAGAAGGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAAAATACAACTCAGCCCGAGCTGAC YNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAGPVLE|VLSGVSQLLPKSRENYLNRCMDQERLRRESTSQKEMDKAETKTKKAAESLRRSVEKYNSARA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12460 TEX14::PTPRG ENSG00000121101.16::ENSG00000144724.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2180 TRUE 840 TEX14 ENSG00000121101.16 protein_coding - - chr17:58556678-58692055:- chr17:58559453:- chr17:56634039-56769416:- chr17:56636814:- PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:61622463:+ chr3:61547243-62283284:+ chr3:61608137:+ chr17:58558971,chr17:58558975 chr3:61619505,chr3:61619501 NA NA chr17:56636332,chr17:56636336 chr3:61605179,chr3:61605175 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Ankyrin_repeats_(3_copies)(100%),Protein_kinase_domain(100%)|Eukaryotic-type_carbonic_anhydrase(100%),Fibronectin_type_III_domain(100%),Protein-tyrosine_phosphatase(100%) Ank_2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),TAP42(100%)|Carb_anhydrase(100%),Y_phosphatase(100%),fn3(100%) 17 15 43 256 54 ENST00000389934.7 unknown upstream upstream duplicates(6),mismappers(1),mismatches(2) GCTCACTCTACTCTGGATGAGGACCTGGAAAGATGGCTGCAGCCACCTGAGGAGAGCGTGGAGCTACAAGACCTTCCCAAGGGCTCTGAAAG___GGAGACAAATATCAAgGATCAAAAAGTTGGTGAAGAGAAAAGAAAAAGGGAAGATAGCATTACACCAGAgAGAAGGAAATCAGAGGGTGTTCTAGGGACTTCTGAAGAAG|TGACAGATTGCAGTACGTATTTTAGGACCTGCCACCCATTTTGATTTGAAAGATTATGTTGTCGGAATTTCAGACACTGCAG___AATTTCAGGCATCACCCCCTGGAGCTGATGGAGAGACTGGTATTCCACTGTGTATCTTAATATCAGGGAAATATCTCACAGGCACATCAAGCTGAT AHSTLDEDLERWLQPPEESVELQDLPKGSERETNIKDQKVGEEKRKREDSITPERRKSEGVLGTSEE|vtdcstyfrtchpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Inactive serine/threonine-protein kinase TEX14 Other NKF5 Q8IWB6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12461 TEX14::PTPRG ENSG00000121101.16::ENSG00000144724.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2180 TRUE 840 TEX14 ENSG00000121101.16 protein_coding - - chr17:58556678-58692055:- chr17:58559453:- chr17:56634039-56769416:- chr17:56636814:- PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:61748878:+ chr3:61547243-62283284:+ chr3:61734552:+ chr17:58558971,chr17:58558975 chr3:61619505,chr3:61619501 NA NA chr17:56636332,chr17:56636336 chr3:61605179,chr3:61605175 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%),Protein_kinase_domain(100%)|Eukaryotic-type_carbonic_anhydrase(100%),Fibronectin_type_III_domain(100%),Protein-tyrosine_phosphatase(100%) Ank_2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),TAP42(100%)|Carb_anhydrase(100%),Y_phosphatase(100%),fn3(100%) 2 2 2 256 39 ENST00000389934.7 ENST00000474889.6 upstream upstream none CTGCAGCCACCTGAGGAGAGCGTGGAGCTACAAGACCTTCCCAAGGGCTCTGAAAG___GGAGACAAATATCAAgGATCAAAAAGTTGGTGAAGAGAAAAGAAAAAGGGAAGATAGCATTACACCAGAgAGAAGGAAATCAGAGGGTGTTCTAGGGACTTCTGAAGAAG|CGTTGACAGAAGGCTACGTTGGGGCCCTGCACGAGAATAGACACGGCAGCGCAGTGCAGATCCGCAGGCGCAAGGCTTCAGGCGACCCGTACTGGGCCTACTCTG___GTGCCTATGGTCCTGAGCACTGGGTCACGTCTAGTGTCAGCTGTGGGGGCCGTCACCAGTCTCCTATTGACATTTTAGACCAGTATGCGCGTGTTGGGGAAGAA LQPPEESVELQDLPKGSERETNIKDQKVGEEKRKREDSITPERRKSEGVLGTSEE|aLTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Inactive serine/threonine-protein kinase TEX14 Other NKF5 Q8IWB6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12462 TRAPPC4::DSCAML1 ENSG00000196655.12::ENSG00000177103.15 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRAPPC4 ENSG00000196655.12 protein_coding + + chr11:119018763-119025454:+ chr11:119021886:+ chr11:118889473-118896164:+ chr11:118892596:+ DSCAML1 ENSG00000177103.15 protein_coding - + chr11:117427772-117817525:- chr11:117515529:+ chr11:117298488-117688240:- chr11:117386244:+ chr11:119023563 chr11:117515382 NA NA chr11:118894273 chr11:117386097 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Sybindin-like_family_(92%)| Sedlin_N(49%),Sybindin(50%)| 59 7 2 839 40 ENST00000533058.5 unknown downstream upstream duplicates(6),mismatches(10),multimappers(1) TGGCCATCAATGGCATGGACGTGAATGGCAGGTACACGGCCGACGGGAAAGAGGTGCTGGAGTATCTGGGTAACCCTGCTAATTACCCGGTGTCCATTCGATTTGGCCGGCCCCGCCTCACTTCTAATGAGAAGCTTATGCTGGCCTCCATGTTtCACTC___GCTCTTTGCCATCGGCTCCCAGCTGTCTCCTGAACAGGGAAGCTCAGGCATTGAGATGCTGGAGACAGACACATTCAAATTGCACTGCTACCAGACACTGACAG___GGATCAAGTTTGTGGTTCTAGCAGATCCTAGGCAAGCTGGAATAGATTCTCTTCTCCGAAAGATTTATGAGATTTACTCAGACTTTGCCCTCAAGAATCCATTCTATTCCTTAGAAATGCCTATCAG|ACTTAGTGAGCGGCTACCCAGGACCAGGCATGAAACAAAGACCTCACCCAGGTGGATGTCAAGGGCCCAGGAGGGACGAA AINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIr|lserlprtrhetktsprwmsraqegr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12468 MYO6::SENP6 ENSG00000196586.17::ENSG00000112701.18 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1233 FALSE NA FALSE NA MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75749423:+ chr6:76458918-76629254:+ chr6:76459140:+ SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75678583:+ chr6:76311225-76427997:+ chr6:76388299:+ chr6:75770246,chr6:75770244 chr6:75678285,chr6:75678280 NA NA chr6:76479963,chr6:76479961 chr6:76388001,chr6:76387996 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Ulp1_protease_family__C-terminal_catalytic_domain(100%) |Peptidase_C48(100%) 7 12 33 398 265 ENST00000671923.1 ENST00000447266.7 downstream upstream duplicates(5),mismappers(1),mismatches(1) GCGCCGGCCGGCGGGCGGAGACCGACTCGGGATCTGTCCGAGCAGGAAGCCAGCCTCAGCCCGGCCGCTGTCGCCGCCCTGTCCTGGTGCCCGTCCGCGTCGTCGCCCTCTTCACTGGCCCTCATCACTTCTCACCGCGCCCTCCAGCTTCACCCGTACAGGTAGCCCCGCCGCCGCGCACCTGCCTTCGCTCCCGCACCG|GTATCATTTGAATCTAAAATACAACTTAGAAGCAAACAAGAATTTCAGTTTTTTGATGAAGAAGAAGAAACTGGAGAAAACCACACCATCTTCATTGGCCCAGTAGAAAA___GTTGATAGTATATCCACCACCTCCAGCTAAGGGAGGCATCTCTGTTACCAATGAGGACCTGCACTGTCTAAATGAAGGAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma LUNG,LUNG,UTERUS,UTERUS,BREAST,HEAD_AND_NECK,UTERUS exact 76459140|76459140,76459140,76459140,76459140|76459140|76459140,76459140|76459140,76459140,76527381 TRUE|TRUE,TRUE,TRUE,TRUE|TRUE|TRUE,TRUE|TRUE,TRUE,FALSE 76385151|76385576,76405520,76405520,76423229|76421044|76425101,76405520|76423391,76419243,76421044 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,YES,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12469 USP32::APPBP2 ENSG00000170832.13::ENSG00000062725.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1234 TRUE 2183 TRUE 841 USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60301599:- chr17:58254688-58499831:- chr17:58378960:- APPBP2 ENSG00000062725.10 protein_coding - - chr17:60443158-60526242:- chr17:60460787:- chr17:58520519-58603603:- chr17:58538148:- chr17:60299266,chr17:60299271 chr17:60461252,chr17:60461254 NA NA chr17:58376627,chr17:58376632 chr17:58538613,chr17:58538615 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Tetratricopeptide_repeat(100%) |TPR_10(100%),TPR_12(100%),TPR_7(100%),TPR_8(100%) 11 10 28 2228 2657 ENST00000300896.9 ENST00000083182.8 upstream downstream duplicates(6),mismatches(1) TGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG___GTGATTTACTGTTCTTTTGGTGGAACATCCAAAGGGCTGCACTTCAATAATTTAATAGTTGGACTTGTCCTCCTTACAAGAGGCAAAGATGAAGAGAAAGCAAAAT|GCAGCCCTTGACATTAGACAGTCAGTGTTTGGTGGCAAAAATATCCACGTAGCAACAGCTCATGAAGATTTGGCCTACTCTTCTTATGTCCACCAGTATAGCTCTGGGAAATTTGACAATGCACT___ATTTCATGCAGAAAGAGCTATTGGTATCATTACCCACATCCTACCTGAAGATCATCTTCTTTTGGCTTCTTCAAAGAGGGTGAAAG___CACTTATTTTAGAGGAGATTGCAATTGATTGTCATAATAAGGAAACTGAACAGAGG CGLSYYMGQHCFIREVLGDGVPPKVAEVIYCSFGGTSKGLHFNNLIVGLVLLTRGKDEEKAK|csp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 58372044 FALSE 58577848 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12470 USP32::APPBP2 ENSG00000170832.13::ENSG00000062725.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2183 TRUE 841 USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60301599:- chr17:58254688-58499831:- chr17:58378960:- APPBP2 ENSG00000062725.10 protein_coding - - chr17:60443158-60526242:- chr17:60456381:- chr17:58520519-58603603:- chr17:58533742:- chr17:60299266,chr17:60299271 chr17:60461252,chr17:60461254 NA NA chr17:58376627,chr17:58376632 chr17:58538613,chr17:58538615 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Tetratricopeptide_repeat(100%) |TPR_10(100%),TPR_12(100%),TPR_7(100%),TPR_8(100%) 2 0 11 2228 1991 ENST00000300896.9 ENST00000083182.8 upstream downstream none GCGAGATCAGGCTCCGACCCCCCGCCGAGGGGATGAGGGGAGCATGGGTGCCAAGGAGTCACGGATCGGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG...CTGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG___GTGATTTACTGTTCTTTTGGTGGAACATCCAAAGGGCTGCACTTCAATAATTTAATAGTTGGACTTGTCCTCCTTACAAGAGGCAAAGATGAAGAGAAAGCAAAAT|ATTTCATGCAGAAAGAGCTATTGGTATCATTACCCACATCCTACCTGAAGATCATCTTCTTTTGGCTTCTTCAAAGAGGGTGAAAG___CACTTATTTTAGAGGAGATTGCAATTGATTGTCATAATAAGGAAACTGAACAGAGGCTGCTTCAAGAAGCTCATGATTTGCACCTGTCTTCACTCCA CGLSYYMGQHCFIREVLGDGVPPKVAEVIYCSFGGTSKGLHFNNLIVGLVLLTRGKDEEKAK|yfmqkellvslptsylkiiffwllqrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 58372044 FALSE 58577848 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12471 USP32::APPBP2 ENSG00000170832.13::ENSG00000062725.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2183 TRUE 841 USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60301599:- chr17:58254688-58499831:- chr17:58378960:- APPBP2 ENSG00000062725.10 protein_coding - - chr17:60443158-60526242:- chr17:60454492:- chr17:58520519-58603603:- chr17:58531853:- chr17:60299266,chr17:60299271 chr17:60461252,chr17:60461254 NA NA chr17:58376627,chr17:58376632 chr17:58538613,chr17:58538615 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Tetratricopeptide_repeat(100%) |TPR_10(100%),TPR_12(100%),TPR_7(100%),TPR_8(100%) 4 2 6 2228 2276 ENST00000300896.9 ENST00000083182.8 upstream downstream duplicates(2) CACGGATCGGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG___TTACAGATGTAGAGCTAAAACGACTGAAGGATGCTTTCAAGAGGACCTGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG___GTGATTTACTGTTCTTTTGGTGGAACATCCAAAGGGCTGCACTTCAATAATTTAATAGTTGGACTTGTCCTCCTTACAAGAGGCAAAGATGAAGAGAAAGCAAAAT|CACTTATTTTAGAGGAGATTGCAATTGATTGTCATAATAAGGAAACTGAACAGAGGCTGCTTCAAGAAGCTCATGATTTGCACCTGTCTTCACTCCAACTAGCTAAAAAAGCTTTTGGGGAATTTAATGTACAGACTGCAAAACACTATGGAAACCTTGGAtGACTTTATCAGTCAATGAGAAAATTTAAG___GAAGCTGAAGAAATGCACATCAAAGCAATTCAGATTAAAGAACAACTTCTTGGTCAAGAAGATTATGAAGTAGCCCTTTCAGTGGGACATCTGGCTTCTTTATA...TGAAGATGTCAGCACCAGCCCCCAGTCCACTGAAGAAGTGGTGCAGTCCTTCCTGATTTCTCAGAATGTCGAGGGACCGAGCTGCTGAGGGAGGACCTCAG RIGFLSYEEALRRVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAEVIYCSFGGTSKGLHFNNLIVGLVLLTRGKDEEKAK|sLILEEIAIDCHNKETEQRLLQEAHDLHLSSLQLAKKAFGEFNVQTAKHYGNLG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 58372044 FALSE 58577848 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12478 ABCA5::ENSG00000291067 ENSG00000154265.16::ENSG00000291067.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCA5 ENSG00000154265.16 protein_coding - - chr17:69244311-69327244:- chr17:69313092:- chr17:67240452-67323385:- chr17:67309233:- ENSG00000291067 ENSG00000291067.1 lncRNA - - chr20:58228940-58309494:- chr20:58272875:- chr20:56803996-56884550:- chr20:56847931:- chr17:69309478,chr17:69309486 chr20:58273303,chr20:58273306 NA NA chr17:67305619,chr17:67305627 chr20:56848359,chr20:56848362 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none ABC-2_family_transporter_protein(9%)| ABC2_membrane_3(5%)| 9 13 18 108 123 ENST00000392676.8 ENST00000650934.1 upstream downstream duplicates(1),low_entropy(1),mismatches(4) GTTTGGAGACAGACCAGAACACTTCTACTGAAGAATTACTTAATTAAATGCAGAACCAAAAAGAGTAGTGTTCAG___GAAATTCTTTTTCCACTATTTTTTTTATTTTGGTTAATATTAATTAGCATGATGCATCCAAATAAGAAATATGAAGAAGTGCCTAATATAGAACTCAATCCTATGGACAAGTTTACTCTTTCTAATCTAATTCTTGGATATACTCCAGTGACTAATATTACAAGCAGCATCATGCAGAAAGTGTCTACTGATCATCTACCTGATG|GCAGATTATTGCCAGAGGGCTGCTTGATATCTTCCGGGACTTCGGTAACAATGAAGAAGACTTCCTCACGGTAATGGAGATTGTAGTCAGATTGTCAGAAGATGCAG___AGCCCACAGTGCGGACTGAGCTGATGGAACAGATTCCTCCTATTGCCATTTTTTTACAAGAAAACAGATCAAATTTTCCAGTGGTGCTCTCTGAATATCTCATACCTATTGTAGTGAGGTACCTCACAGATCCAAACAATCAG___ATAATCTGCA VWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPD|grllpegclissgtsvtmkktssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12479 ABCA5::PPP4R1L ENSG00000154265.16::ENSG00000124224.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCA5 ENSG00000154265.16 protein_coding - - chr17:69244311-69327244:- chr17:69313092:- chr17:67240452-67323385:- chr17:67309233:- PPP4R1L ENSG00000124224.20 transcribed_unprocessed_pseudogene - - chr20:58231789-58286399:- chr20:58272875:- chr20:56806845-56861455:- chr20:56847931:- chr17:69309478,chr17:69309486 chr20:58273303,chr20:58273306 NA NA chr17:67305619,chr17:67305627 chr20:56848359,chr20:56848362 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none ABC-2_family_transporter_protein(9%)| ABC2_membrane_3(5%)| 9 13 18 108 123 ENST00000392676.8 ENST00000334187.12 upstream downstream duplicates(1),low_entropy(1),mismatches(4) GTTTGGAGACAGACCAGAACACTTCTACTGAAGAATTACTTAATTAAATGCAGAACCAAAAAGAGTAGTGTTCAG___GAAATTCTTTTTCCACTATTTTTTTTATTTTGGTTAATATTAATTAGCATGATGCATCCAAATAAGAAATATGAAGAAGTGCCTAATATAGAACTCAATCCTATGGACAAGTTTACTCTTTCTAATCTAATTCTTGGATATACTCCAGTGACTAATATTACAAGCAGCATCATGCAGAAAGTGTCTACTGATCATCTACCTGATG|GCAGATTATTGCCAGAGGGCTGCTTGATATCTTCCGGGACTTCGGTAACAATGAAGAAGACTTCCTCACGGTAATGGAGATTGTAGTCAGATTGTCAGAAGATGCAG___AGCCCACAGTGCGGACTGAGCTGATGGAACAGATTCCTCCTATTGCCATTTTTTTACAAGAAAACAGATCAAATTTTCCAGTGGTGCTCTCTGAATATCTCATACCTATTGTAGTGAGGTACCTCACAGATCCAAACAATCAG___ATAATCTGCA VWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEEVPNIELNPMDKFTLSNLILGYTPVTNITSSIMQKVSTDHLPD|grllpegclissgtsvtmkktssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12480 AHCYL1::RAD51C ENSG00000168710.18::ENSG00000108384.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1236 TRUE 2185 TRUE 842 AHCYL1 ENSG00000168710.18 protein_coding + + chr1:109984765-110023742:+ chr1:109985172:+ chr1:110527387-110566364:+ chr1:110527794:+ RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58734118:+ chr17:56769934-56812972:+ chr17:56811479:+ chr1:110005188,chr1:110005188 chr17:58733578,chr17:58733575 NA NA chr1:110547810,chr1:110547810 chr17:56810939,chr17:56810936 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Rad51(2%) |Rad51(0%) 8 26 6 1189 1090 ENST00000369799.10 ENST00000337432.9 downstream upstream none CAGCCGCTGGCCGGGCCGGCCGGGGAATGTCGATGCCTGACGCGATGCCGCTGCCCGGGGTCGGGGAGGAGCTGAAGCAGGCCAAGGAGATCGAGGACGCCGAGAAGTACTCCTTCATGGCCACCGTCACCAAGGCGCCCAAGAAG|CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAGTGGAC MSMPDAMPLPGVGEELKQAKEIEDAEKYSFMATVTKAPKK|PQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 12481 AHCYL1::RAD51C ENSG00000168710.18::ENSG00000108384.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2185 TRUE 842 AHCYL1 ENSG00000168710.18 protein_coding + + chr1:109984765-110023742:+ chr1:110004451:+ chr1:110527387-110566364:+ chr1:110547073:+ RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58734118:+ chr17:56769934-56812972:+ chr17:56811479:+ chr1:110005188,chr1:110005188 chr17:58733578,chr17:58733575 NA NA chr1:110547810,chr1:110547810 chr17:56810939,chr17:56810936 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Rad51(2%) |Rad51(0%) 0 3 6 46 1090 ENST00000359172.3 ENST00000337432.9 downstream upstream duplicates(1) GAAGAAGTGACTGGAGGTGGCTGTGGATTCAACTCTGGCCTGAGATTGATTCCCTTGAGATAAGTTGTTTTCTG|CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAGTGGACTTGTTACCTTAAAGTATAAATAAACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 12482 AHCYL1::RAD51C ENSG00000168710.18::ENSG00000108384.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2185 TRUE 842 AHCYL1 ENSG00000168710.18 protein_coding + + chr1:109984765-110023742:+ chr1:109985543:+ chr1:110527387-110566364:+ chr1:110528165:+ RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58734118:+ chr17:56769934-56812972:+ chr17:56811479:+ chr1:110005188,chr1:110005188 chr17:58733578,chr17:58733575 NA NA chr1:110547810,chr1:110547810 chr17:56810939,chr17:56810936 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Rad51(2%) |Rad51(0%) 0 1 6 10 1090 ENST00000393614.8 ENST00000337432.9 downstream upstream duplicates(1) CTtAGCTGACCCTTGTGACCAGTCCGGGGGCATGGGGTGTACAGAAAATCTCCCTTCAG|CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAGTGGACTTGTTACCTTAAAGTATAAATAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 12483 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1237 TRUE 2186 TRUE 843 ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151573174:+ chr6:151815152-151942328:+ chr6:151894309:+ chr6:151724280,chr6:151724276 chr6:151563423,chr6:151563416 NA NA chr6:152045415,chr6:152045411 chr6:151884558,chr6:151884551 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 5 8 25 31 86 ENST00000440973.5 ENST00000239374.8 downstream upstream duplicates(4),mismatches(2) GCTCTTTAACAGGCTCGAAAGGTCCATGCTCCTTTCTCCTGCCCATTCTATAGCATAAGAAGACAGTCTCTGAGTGATAATCTTCTCTTCAA___GAAGAAGAAAACTAGGAAGGAGTAAGCACAAAGATCTCTTCACATTCTCCGGGACTGCGGTACCAAATATCAGCACAGCACTTCTTGAAAAAGGATGTAGATTTTAATCTGAACTTTGAACCATCACTGAG|GACCTGCTCAGTGCTGTAGAAGCAAAAGAAGCTCTTGAAAGGGAAGTTAAGATCTTCCAAGAAAGGCTGCTTGCTGGCCAGCAGGTCTGGGATGCCTCAAAGCAGGAAGTGAGCCTCCTGAAGAAAAGCTCTTCTGAGTTGGAGAAGAGTTTGAAGGCCAGTCAGGATGCAGTCACAACCTCACAAAGCCAGTACTcCTCATTTAGGGAGAAAATCGCAGCCCTCCTTAGGGGCAGATTGAGCATGACTGGGTCCACTGAGGACACCATTTTGGAGAAGATTCGAGAAATGGACAGCCGGGAAGAAAGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 12484 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2186 TRUE 843 ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151585889:+ chr6:151815152-151942328:+ chr6:151907024:+ chr6:151724280,chr6:151724276 chr6:151563423,chr6:151563416 NA NA chr6:152045415,chr6:152045411 chr6:151884558,chr6:151884551 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 3 1 8 31 158 ENST00000440973.5 ENST00000239374.8 downstream upstream duplicates(2) GCAGGCTCCATGCTCAGAAGCTCTTTAACAGGCTCGAAAGGTCCATGCTCCTTTCTCCTGCCCATTCTATAGCATAAGAAGACAGTCTCTGAGTGATAATCTTCTCTTCAA___GAAGAAGAAAACTAGGAAGGAGTAAGCACAAAGATCTCTTCACATTCTCCGGGACTGCGGTACCAAATATCAGCACAGCACTTCTTGAAAAAGGATGTAGATTTTAATCTGAACTTTGAACCATCACTGAG|ATGGTCTCCCAGCTTGAAGCCCAAATATCTGAGCTTGTTGAACAGTTGGGAAAGGAGTCTGGGTTTCACCAGAAAGCTCTCCAGAGGGCCCAGAAAGCAGAGAATATGTTGGAGACTCTTCAGGGTCAGCTGACACACCTGGAGGCAGAGCTGGTTTCTGGAGGTGTTTTGCGAGACAACTTGAATTTTGAGAAACAAAAA___TATCTTAAATTTCTGGATCAGCTTTCTCAGAAAATGAAGTTGGACCAGATGGCTGCCGAACTTGGCTTTGACATGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 12485 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2186 TRUE 843 ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151690664:+ chr6:151977826-152450754:+ chr6:152011799:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151573174:+ chr6:151815152-151942328:+ chr6:151894309:+ chr6:151724280,chr6:151724276 chr6:151563423,chr6:151563416 NA NA chr6:152045415,chr6:152045411 chr6:151884558,chr6:151884551 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 0 1 6 68 86 ENST00000440973.5 ENST00000239374.8 downstream upstream mismatches(1) TGAAAATGCAGGCTCCATGCTCAGAAGCTCTTTAACAGGCTCGAAAGGTCCATGCTCCTTTCTCCTGCCCATTCTATAGCATAAGAAGACAGTCTCTGAGTGATAATCTTCTCTTCAA|GACCTGCTCAGTGCTGTAGAAGCAAAAGAAGCTCTTGAAAGGGAAGTTA...TCCAAGAAAGGCTGCTTGCTGGCCAGCAGGTCTGGGATGCCTCAAAGCAGGAAGTGAGCCTCCTGAAGAAAAGCTCTTCTGAGTTGGAGAAGAGTTTGAAGGCCAG...GGAGAAAATCGCAGCCCTCCTTAGGGGCAGATTGAGCATGACTGGGTCCACTGAGGACACCATTTTGGAGAAGATTCGAGAAATGGACAGCCGGGAAGAAA...GCgCGAACAGcGCAGCgGGTTCcTCTTtAGAGCAAgGtAGTCATTGAGAACAAGACCATTGCCCgCAATTTGCAGAGAAAG___CTAAAGACACAGAAAGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 12486 ATXN7L3::FAM171A2 ENSG00000087152.16::ENSG00000161682.15 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1238 FALSE NA FALSE NA ATXN7L3 ENSG00000087152.16 protein_coding - - chr17:44191805-44200113:- chr17:44198020:- chr17:42269173-42277481:- chr17:42275388:- FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44356588:- chr17:42430583-42441221:- chr17:42433956:- chr17:44198002,chr17:44198014 chr17:44358206,chr17:44358215 NA NA chr17:42275370,chr17:42275382 chr17:42435574,chr17:42435583 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Uncharacterised_protein_family_UPF0560(86%) |UPF0560(44%) 6 22 8 268 109 ENST00000587097.6 ENST00000293443.12 upstream downstream duplicates(7),mismatches(5) CCCGGCGCGGCCCCCCGGGCGGG___CCGTGTTGCCGCCCGCTGTGCTATGAGCAGTCAGAGCGCCGTCTCCACAAGAGTTTACAAATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAG|GTGCCCGCTCCCAGCCCTTGGTGCAGTTCCAGCGCCGGGCTGCCCGCCTGCCTGTCAGCTCCACCTACAGCCAGCTCTGGGCGTCACTTACGCCTGCCAGCACCCAGCAGGAAATGCGGGCTTTCCCTGCCTTCCTGGGCACTGAGGCCTCCAGCTCAG___GCAATGGCTCCTGGCTGGAGCTGATGCCCCTGACTGCTGTGAGCGTGCACCTGCTGACAGGTAATGGGACAGAGGTGCCGCTCTCAGGCCCCATTCACCTGTCCCTGCCCGTGCCCTCCGAGACTCGTGCCCTCACCGTGGGCACCAGCATTCCAGCCTGGAGATTTGACCCCAAGAGTG MKMEEMSLSGLDNSKLE|vpapspwcsssaglpaclsapptassgrhlrlpapsrkcglslpswalrppaqamapgws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12491 ATP1A1::ZFP64 ENSG00000163399.16::ENSG00000020256.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2188 TRUE 844 ATP1A1 ENSG00000163399.16 protein_coding + + chr1:116372668-116410261:+ chr1:116396734:+ chr1:116915290-116952883:+ chr1:116939356:+ ZFP64 ENSG00000020256.20 protein_coding - - chr20:52051663-52204308:- chr20:52052783:- chr20:50668202-50820847:- chr20:50669322:- chr1:116397001,chr1:116397002 chr20:52063699,chr20:52063698 NA NA chr1:116939623,chr1:116939624 chr20:50680238,chr20:50680237 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Cation_transport_ATPase_(P-type)(100%),Cation_transporter/ATPase__N-terminus(100%),E1-E2_ATPase(100%)| Cation_ATPase(100%),Cation_ATPase_N(100%),E1-E2_ATPase(100%),Hydrolase(76%)| 1 4 24 2629 11 ENST00000295598.10 unknown downstream downstream duplicates(1),low_entropy(1),mismappers(4),mismatches(3) TCTTTCTGCCAGATGAACAGTTTCCTGAAGGGTTCCAGTTTGACACTGACGATGTGAATTTCCCTATCGATAATCTGTGCTTTGTTGGGCTCATCTCCATGATTGACCCTCCACGGGCGGCCGTTCCTGATGCCGTGGGCAAATGTCGAAGTGCTGGAATTAAG___GTCATCATGGTCACAGGAGACCATCCAATCACAGCTAAAGCTATTGCCAAAGGTGTGGGCATCATCTCAGAAGGCAATGAGACCGTGGAAGACATTGCTGCCCGCCTCAACATCCCAGTCAGCCAGGTGAACCCCAG|GCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGACTTTGGGAGGCCGAGGCGGGCGGATCAcGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAACACAAAACATTAGCCGGGCATGGTGGCAGGCGCCTGTgGTCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGAAGGTGGA FLPDEQFPEGFQFDTDDVNFPIDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPr|pgavahacnprlweaeaggsrgqeietilantvkphly* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ATPase, Na+/K+ transporting, alpha 1 polypeptide 1 Yes adrenal aldosterone producing adenoma epithelial oncogene, TSG missense, other FALSE NA NA NA NA NA NA NA NA NA 12492 ATP1A1::ZFP64 ENSG00000163399.16::ENSG00000020256.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1241 TRUE 2188 TRUE 844 ATP1A1 ENSG00000163399.16 protein_coding + + chr1:116372668-116410261:+ chr1:116396734:+ chr1:116915290-116952883:+ chr1:116939356:+ ZFP64 ENSG00000020256.20 protein_coding - - chr20:52051663-52204308:- chr20:52052132:- chr20:50668202-50820847:- chr20:50668671:- chr1:116397001,chr1:116397002 chr20:52063699,chr20:52063698 NA NA chr1:116939623,chr1:116939624 chr20:50680238,chr20:50680237 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Cation_transport_ATPase_(P-type)(100%),Cation_transporter/ATPase__N-terminus(100%),E1-E2_ATPase(100%)| Cation_ATPase(100%),Cation_ATPase_N(100%),E1-E2_ATPase(100%),Hydrolase(76%)| 6 8 13 2629 46 ENST00000295598.10 ENST00000371518.6 downstream downstream duplicates(2),mismatches(4) GAACAGTTTCCTGAAGGGTTCCAGTTTGACACTGACGATGTGAATTTCCCTATCGATAATCTGTGCTTTGTTGGGCTCATCTCCATGATTGACCCTCCACGGGCGGCCGTTCCTGATGCCGTGGGCAAATGTCGAAGTGCTGGAATTAAG___GTCATCATGGTCACAGGAGACCATCCAATCACAGCTAAAGCTATTGCCAAAGGTGTGGGCATCATCTCAGAAGGCAATGAGACCGTGGAAGACATTGCTGCCCGCCTCAACATCCCAGTCAGCCAGGTGAACCCCAG|GGTGTTGCTATGTTGCCTAGATGGAATGCAGTGGCATGATCACAGCTCACTGCAGCCTCGACCTCCTGGACTCAAGCAATCCTCCTCCTCCTGCCCCAGCCTCCCAAATAGCTGGGACCACAGGCATGTGCCACCACGCCCAGCTAATTTTTTTATTTTTTgTAGAAACGAGGTCTTGCTCTGTTGCCCAGGCTGGTCTCAAACcCGTGGGCTCAAGTGATTCTtCTGCCTTAGCCTTCTGAAATGCTAcGATTACAGGCAt EQFPEGFQFDTDDVNFPIDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPr|vllccldgmqwhdhsslqprppglkqsssscpslpnswdhrhvpprpanffifcrnevllccpgwsqtrglk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ATPase, Na+/K+ transporting, alpha 1 polypeptide 1 Yes adrenal aldosterone producing adenoma epithelial oncogene, TSG missense, other FALSE NA NA NA NA NA NA NA NA NA 12493 SULF2::PRICKLE2 ENSG00000196562.16::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1242 TRUE 2189 TRUE 845 SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47785343:- chr20:46284941-46415360:- chr20:46414087:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64099925:- chr3:64077912-64431152:- chr3:64085601:- chr20:47782922,chr20:47782927 chr3:64116501,chr3:64116503 NA NA chr20:46411666,chr20:46411671 chr3:64102177,chr3:64102179 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 0 17 12 363 65 ENST00000688720.1 ENST00000295902.11 upstream downstream duplicates(4),mismatches(1) CGCCCAGCGGCCCGGCCGGGCTGCGGCAGAGGCGGCGGCGGCGCCCCGCTCCGGGTGAGGTTGCCGGGGCCGTGCGCGCTG|GCCTCTCTGCTGATGGTGGTGCCAAGCGCCAGGAGCACCTATCCCGATTTTCCATGCCTGACCTCAGCAAAGACTCTGGAATGAATGTGTCTGAGAAGCTGAGCAACATGGGCACTCTTAACTCGTCCATGCAGTTCCGGAGCGCAGAGTCAGTTCGCAGCCTGCTCTCTGCCCAGCAGTACCAGGAGATGGAGGGAAACCTCCACCAGCTCAGCAACCCCATTGGCTACAGAGACCTGCAGTCCCACGGAAGGATGCATCAGAGCTTTGATTTTGATGGAGGGATGGCGGGCAGCAAGCTGCCAGGGCAGGAGGGCGTGAGGATCCAGCCCATGAGTGAACGCACCCGGAGAAGAGCTACTTCACGCGACGACAACCGCCGTTTCCGACCTCACAGGTCCAGGCGTTCCCGACGCTCTCGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12494 SULF2::PRICKLE2 ENSG00000196562.16::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1243 TRUE 2189 TRUE 845 SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47786048:- chr20:46284941-46415360:- chr20:46414792:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64099925:- chr3:64077912-64431152:- chr3:64085601:- chr20:47782922,chr20:47782927 chr3:64116501,chr3:64116503 NA NA chr20:46411666,chr20:46411671 chr3:64102177,chr3:64102179 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 7 8 12 794 65 ENST00000698128.1 ENST00000295902.11 upstream downstream duplicates(4),low_entropy(1),mismappers(2) GAAAGCGGAAAAGAGGCAGATTCACGTCGTTTCCAGCCAAGTGGACCTGATCGATGGCCCTCCTGAATTTATCACGATATTTGATTTATTAGCGATGCCCCCTGGTTTGTGTGTTACGCACACACACGTGCACACAAGGCTCTGGCTCGCTTCCCTCCCTCGTTTCCAGCTCCTGGGCGAATCCCACATCTGTTTCAACTCTCCGCCGAGGGCGAGCAGGAGCGAGAGTGTGTCGA|GCCTCTCTGCTGATGGTGGTGCCAAGCGCCAGGAGCACCTATCCCGATTTTCCATGCCTGACCTCAGCAAAGACTCTGGAATGAATGTGTCTGAGAAGCTGAGCAACATGGGCACTCTTAACTCGTCCATGCAGTTCCGGAGCGCAGAGTCAGTTCGCAGCCTGCTCTCTGCCCAGCAGTACCAGGAGATGGAGGGAAACCTCCACCAGCTCAGCAACCCCATTGGCTACAGAGACCTGCAGTCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12495 SULF2::PRICKLE2 ENSG00000196562.16::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2189 TRUE 845 SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47785835:- chr20:46284941-46415360:- chr20:46414579:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64099925:- chr3:64077912-64431152:- chr3:64085601:- chr20:47782922,chr20:47782927 chr3:64116501,chr3:64116503 NA NA chr20:46411666,chr20:46411671 chr3:64102177,chr3:64102179 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 0 1 12 144 65 ENST00000359930.8 ENST00000295902.11 upstream downstream duplicates(4) GCCGTGCGCCGGGGACAGGCAGGGCCGGGTCGCGGGCCGCGCGTCCCCCAGGCCGGAG|GCCTCTCTGCTGATGGTGGTGCCAAGCGCCAGGAGCACCTATCCCGATTTTCCATGCCTGACCTCAGCAAAGACTCTGGAATGAATGTGTCTGAGAAGCTGAGCAACATGGGCACTCTTAACTCGTCCATGCAGTTCCGGAGCGCAGAGTCAGTTCGCAGCCTGCTCTCTGCCCAGCAGTACCAGGAGATGGAGGGAAACCTCCACCAGCTCAGCAACCCCATTGGCTACAGAGACCTGCAGTCCCACGGAAGGATGCATCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12496 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 1244 TRUE 2190 TRUE 846 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154027597:- chr1:153965166-154127592:- chr1:154000073:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 5 11 12 57 54 ENST00000368655.5 ENST00000271854.3 upstream downstream duplicates(4),mismatches(1) CGGCCCGCCCCCCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|GTGTTTGAAAAACTCCAACTCTTCTATCCAGAGTGCCAACCAGAGCAGATTCTGATGCCTATAAATTCTCAGCTCAAACTCCATACCAACAG___GGAAGGAGCTGCCTTCGTGAGTTCTCGTGTTCTCAAGTGTTTCCCTAATTCATCCGTCATTGAGGAGGATGGTGAAGGGCTCCTGAAAGCTGGTTCCATTGCAGGTACTGCTGTATTGGAAGTCACTTCTATAGAACCTTTTGGAGTCAACCAAACAACCATAACTGGGGTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12497 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 1245 TRUE 2190 TRUE 846 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154030054:- chr1:153965166-154127592:- chr1:154002530:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 7 13 57 19 ENST00000368655.5 ENST00000271854.3 upstream downstream duplicates(3) GGCCCGCCCCCCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|GTTTTTCTACAGCTCCCAGTAGAGCATAACTTTGCCATGGTTGTCCATACAAAAGCAGCAGGCAGGACCAGTATCAAGGTCACTGTTCACTGCATGAACAGTTCCTCTGGGCAGTTTGAGGGGAATTTGTTGGAACTCTCTGATGAAGTACAGATCCTG___GTGTTTGAAAAACTCCAACTCTTCTATCCAGAGTGCCAACCAGAGCAGATTCTGATGCCTATAAATTCTCAGCTCAAACTCCATACCAACAG___GGAAGGAGCTGCCTTCGTGAGTTCTCGTGTTCTCAAGTGTTT...ACATTGgCACTGGAGTAGGAGTGGCCAGGAGTCCGGGGACTGCAATGATTTTTCATGACATCCCAGGAGTAGTGAAAACATATCGAGAG___GTGGTGGTCAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12498 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 2190 TRUE 846 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153898856:- chr1:153761506-153895836:- chr1:153871332:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154027597:- chr1:153965166-154127592:- chr1:154000073:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 0 1 14 3 54 ENST00000636014.1 ENST00000271854.3 upstream downstream duplicates(3) CACAGCTACATCAGCAGGGTCATACTGTTTTCAGGGAATGGAGATGTTAAGGCAG|GTGTTTGAAAAACTCCAACTCTTCTATCCAGAGTGCCAACCAGAGCAGATTCTGATGCCTATAAATTCTCAGCTCAAACTCCATACCAACAG___GGAAGGAGCTGCCTTCGTGAGTTCTCGTGTTCTCAAGTGTTTCCCTAATTCATCCGTCATTGAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 FALSE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12499 RSBN1::VAV3 ENSG00000081019.14::ENSG00000134215.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RSBN1 ENSG00000081019.14 protein_coding - - chr1:113761832-113812476:- chr1:113811710:- chr1:114304454-114355098:- chr1:114354332:- VAV3 ENSG00000134215.16 protein_coding - + chr1:107571161-107965180:- chr1:107609388:+ chr1:108113783-108507802:- chr1:108152010:+ chr1:113807899,chr1:113807906 chr1:107584699,chr1:107584692 NA NA chr1:114350521,chr1:114350528 chr1:108127321,chr1:108127314 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 7 4 15 157 18 ENST00000261441.9 unknown upstream upstream mismatches(3) GTTGAGCCTCTTCTCCTGCCGCCTCCGCCGCCACCTTCGCTGGCACCCGCCGGGCCCGCTGTCGCTGCCCCTCTCCCGGCCCCAAGCACCTCGGCCCTCTTCACCTTCTCGCCTCTGACGGTGAGCGCGGCCGGGCCCAAGCATAAGGGCCACAAGGAGCGGCACAAGCACCATCACCACCGCGGCCCCGATGGTGATCCCAGCTCCTGCGGAACCGATCTCAAGCACAAGGACAAGCAGGAAAACGGCGAGAGGACTGGAGGGGTGCCTCTGATCAAAGCCCCCAAGAGAG|AAGCTACTAGTGTCAACCAGAAGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGAGGATCACTTCAGCCCAGGAGTTCAAGGCTGCAATGGGTTATGATGGCATCGCTGCACTCCATCCTGGGTGACAGAGCAAGACCCCATCTCTAAAACTATAAAAAATAAAAAAAAAAA?TACTACT VEPLLLPPPPPPSLAPAGPAVAAPLPAPSTSALFTFSPLTVSAAGPKHKGHKERHKHHHHRGPDGDPSSCGTDLKHKDKQENGERTGGVPLIKAPKR|eatsvnqkqwltpvipalwritsaqefkaamgydgiaalhpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12500 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1246 FALSE NA FALSE NA TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37564219:+ chr14:37667099-38048330:+ chr14:38033424:+ chr14:37597658,chr14:37597658 chr14:37562866,chr14:37562863 NA NA chr14:38066863,chr14:38066863 chr14:38032071,chr14:38032068 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 6 12 7 58 22 ENST00000553443.6 ENST00000537471.7 downstream upstream mismappers(1) CCCCGGGGTCCCTCCCCAGAGG?ACACGCCACCTTCCGAGCGCGGGCTGCGGCCC...AGAAAAGGGAAAAAGCCCCACTTTTGCTTCGTCACTAGAAACCGGGTCATCTGAGTCAGCCGAGCCAAGTGACGTTAGGCCGACCCGGGCCCCGGGCTAGCAGAGCGGAGGCGCTGCCACGAAACTCGTACCTGCGGCTAAGAGCAG|CATTGCAGAAGCTGCTTCCATGTCCTTAAGGTGACAAAGCATATGAGGACTTTGCAAGTACTTGGAGTAAAGGAAGAGAAGAGAATTCACAGAGTGAAAAGAGGAGAAAGAGTGCTCTAAAATATCACCAATGGACTGCAACAT___TGAAGTTAGAGACAAGGTCATCAGCCAAGACTGGGGAGAAAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12501 SMARCC1::EMCN ENSG00000173473.11::ENSG00000164035.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2191 TRUE 847 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47738029:- chr3:47626759-47823596:- chr3:47779519:- EMCN ENSG00000164035.10 protein_coding - - chr4:100395341-100880126:- chr4:100570325:- chr4:101316498-101801283:- chr4:101491482:- chr3:47737025,chr3:47737033 chr4:100603226,chr4:100603231 NA NA chr3:47778515,chr3:47778523 chr4:101524383,chr4:101524388 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none SWIRM-associated_domain_at_the_N-terminal(31%)|Endomucin(100%) SWIRM-assoc_2(45%)|Endomucin(100%) 1 7 15 292 47 ENST00000254480.10 ENST00000510657.1 upstream downstream duplicates(4),mismappers(31),mismatches(3) GGAGACGGTGTCCCAGCTGGATTCGGTGCGGGTCTGGCTGGGCAAGCACTACAAGAAG___TATGTTCATGCGGATGCTCCTACCAATAAAACACTGGCTGGGCTGGTGGTGCAGCTTCTTCAGTTCCAGGAAGATGCCTT...CCGGCCTTCACCAAACTCCCT___GCAAAGTGTTTCATGGATTTCAAAGCTGGAGGCGCCTTATGTCACATTCTTGGGGCTGCTTACAAGTATAAAAATGAACAGGGATG___GCGGAGGTTTGACCTACAGAACCCATCTCGAATGGATCGTAATGTGGAAATGTTTATGAACATTGAAAAAACATTGGTGCAG|ATGGAGTCTCACTTTGTCACCCAGGCTGGAATGCAGTGGCACAATCTTGGCTCACCACAACCTCCAGCTCCCAGGTTCAAGCGATTCTCCTGCCTCGGCCTCCTGCATAGCTGGGATTACAG___AGCAAGCAAGCAATCAGTGGAACAAAACAGCCATGAAGATCAACTGTGT PAFTKLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQ|meshfvtqagmqwhnlgspqppaprfkrfsclgllhswdyraskqsveqnshedql NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12502 SMARCC1::EMCN ENSG00000173473.11::ENSG00000164035.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2191 TRUE 847 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47738029:- chr3:47626759-47823596:- chr3:47779519:- EMCN ENSG00000164035.10 protein_coding - - chr4:100395341-100880126:- chr4:100583966:- chr4:101316498-101801283:- chr4:101505123:- chr3:47737025,chr3:47737033 chr4:100603226,chr4:100603231 NA NA chr3:47778515,chr3:47778523 chr4:101524383,chr4:101524388 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none SWIRM-associated_domain_at_the_N-terminal(31%)|Endomucin(100%) SWIRM-assoc_2(45%)|Endomucin(100%) 2 1 18 292 6 ENST00000254480.10 ENST00000510657.1 upstream downstream duplicates(1),mismappers(8) CTCCCT___GCAAAGTGTTTCATGGATTTCAAAGCTGGAGGCGCCTTATGTCACATTCTTGGGGCTGCTTACAAGTATAAAAATGAACAGGGATG___GCGGAGGTTTGACCTACAGAACCCATCTCGAATGGATCGTAATGTGGAAATGTTTATGAACATTGAAAAAACATTGGTGCAG|AAAGTGGAAAAAGGAAACACTAAAAACAGGAAA...AAATGGAGAGAGGAACTATGGTTGGAGATTGGAAAACTATTATTAAG___AGCAAGCAAGCAATCAGTGGAACAAAACAGCCATGAAGATCAACTGTGTTCAGC LPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQ|kvekgntknr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12503 SMARCC1::EMCN ENSG00000173473.11::ENSG00000164035.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2191 TRUE 847 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47772817:- chr3:47626759-47823596:- chr3:47814307:- EMCN ENSG00000164035.10 protein_coding - - chr4:100395341-100880126:- chr4:100398373:- chr4:101316498-101801283:- chr4:101319530:- chr3:47737025,chr3:47737033 chr4:100603226,chr4:100603231 NA NA chr3:47778515,chr3:47778523 chr4:101524383,chr4:101524388 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation low none SWIRM-associated_domain_at_the_N-terminal(17%)| SWIRM-assoc_2(9%)| 1 0 0 318 28 ENST00000254480.10 ENST00000296420.9 upstream downstream none GGGGATTGCGGCGGCAGCCGCAGGCCTAGCTGTTTATCGACGGAAGGATGGGGGCCCGGCCACCAAGTTTTGGGAGAGCCCGGAGcCGGgGgCCCAGCT...ACCCGGCCTTCACCAAACTCCCT|GCcTAATCTTCAGCTTCTATGCACCAAGCGTGGAAAAGGAGAAAGTCCTGCAGAATCAATCCCGACTTCCATACCTGC PAFTKLP|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12504 TRIM37::RPS6KB1 ENSG00000108395.14::ENSG00000108443.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59104293:- chr17:57059999-57184282:- chr17:57181654:- RPS6KB1 ENSG00000108443.14 protein_coding + - chr17:59893046-59950574:+ chr17:59922369:- chr17:57970407-58027935:+ chr17:57999730:- chr17:59092950,chr17:59092958 chr17:59946263,chr17:59946268 NA NA chr17:57170311,chr17:57170319 chr17:58023624,chr17:58023629 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Zinc_finger__C3HC4_type_(RING_finger)(60%)| zf-C3HC4_3(0%),zf-RING_2(0%)| 11 4 8 2871 18 ENST00000393066.7 unknown upstream downstream mismappers(4),mismatches(2) GGCGATTTGATCTGGCGACCTCGGGCCGGCGCCTAAGAGGTCAGACTGCGGAGCCTGCGGGTCGCCAGCGGCCCCGCCGAGAGCCGGAGGCAATGGATGAACAGAGCGTGGAG___AGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAGAAATTGCGGGATGCACGCCTGTGTCCTCATTGCTCCAAACTGTGTTGTTTCAGCTGTATTAGG|ATCACTTGTTAACTACAAAAGGAAAAAGAGGCCGGGAACGGAGGCTCAAGTCTGTAATCTCAACACTTTGGGAGGCCGAGGAGAGCGGCTCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTCGTCTCTACTACAATTACAAAAATTAGGCAGGCGTGGTAGGAGGCACCTGTAATCCCAGCTACTTGTGGGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAG...AAAAAAAAAAAAAAAATGCCCTTATTCTTAGGAGATGTATAGATGAAATTAGGGGTGAAGTGCTATGAAATCTGCAGTTAACTCTCAAATTGTACATGAGGAA MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIR|itc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12505 PAWR::PPP1R12A-AS2 ENSG00000177425.11::ENSG00000258048.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- PPP1R12A-AS2 ENSG00000258048.1 lncRNA + - chr12:79690144-79778451:+ chr12:79724505:- chr12:80083924-80172231:+ chr12:80118285:- chr12:79584568,chr12:79626111,chr12:79584570 chr12:79754376,chr12:79732774,chr12:79754375 NA NA chr12:79978348,chr12:80019891,chr12:79978350 chr12:80148156,chr12:80126554,chr12:80148155 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 2 14 7 432 36 ENST00000328827.9 unknown upstream downstream none GCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|GTGAAGAAACTGAGGCAGCAGAAATGAAGGAATTTGACAAAGATCATACAGTTAAGTAGTATAGGCAAGATTCAATTAAAGGAAGTCTGACCTTAAAACTCATATCTTAAAAGAATTACCACATGATCTAGCAATCGCATTACTGGATATTTATACAAAGGAAATGAAATTTGTATGTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTTTTCACAATAGCCAAGATATGGAATCAACCTAAGTGTCTATCAACAGATGAATGAAGAAAGAAAATGTATACACAATGGAGTAACATTCAGCCTTAAAAGCAAGAAAATCCAGCCTTAAAAAGGAAGGACGACCGGGTTGTCATTTGGGACTACATGGATGAACCTGGAAAACATTATGTTAAGTGAAATAAGCCAGGCACAGGAAGACAATACTGCATGATCTCACCCATTTGTGGAATTTTAAAAAGTCAGAAGTCAGA PPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|vkklrqqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12509 RAD51C::ATXN7 ENSG00000108384.16::ENSG00000163635.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1248 TRUE 2193 TRUE 848 RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58730307:+ chr17:56769934-56812972:+ chr17:56807668:+ ATXN7 ENSG00000163635.20 protein_coding + + chr3:63863155-64003462:+ chr3:63979915:+ chr3:63848831-63989138:+ chr3:63965591:+ chr17:58731202,chr17:58731199 chr3:63976828,chr3:63976822 NA NA chr17:56808563,chr17:56808560 chr3:63962504,chr3:63962498 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Rad51(89%)|SCA7__zinc-binding_domain(100%) AAA_25(100%),HHH_5(100%),Rad51(90%)|SCA7(100%) 0 1 19 48 61 ENST00000697686.1 ENST00000674280.1 downstream upstream duplicates(2) GGCTGGAGTGCAGAGGCACGATCTCGGCTCACTGCAACCTCCACCTCCCCAGTTCAAGTGATTCTCCTACCTCAGCCTCCTCAGTAGCTGGGATTACAG|AAAGAAGACATAGCTCATCCAGCA...GCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGTGTTCTTAGCGCATCCTCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGAACACCAGGCCAATGCATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAAT___CATGACACCCTCTGTGAAAGTGGAAAAGATTCATCCGAAAAT LECRGTISAHCNLHLPSSSDSPTSASSVAGIT|eRRHSSSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12510 RAD51C::ATXN7 ENSG00000108384.16::ENSG00000163635.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2193 TRUE 848 RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58720812:+ chr17:56769934-56812972:+ chr17:56798173:+ ATXN7 ENSG00000163635.20 protein_coding + + chr3:63863155-64003462:+ chr3:63979915:+ chr3:63848831-63989138:+ chr3:63965591:+ chr17:58731202,chr17:58731199 chr3:63976828,chr3:63976822 NA NA chr17:56808563,chr17:56808560 chr3:63962504,chr3:63962498 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Rad51(82%)|SCA7__zinc-binding_domain(100%) AAA_25(100%),HHH_5(100%),Rad51(65%)|SCA7(100%) 2 1 14 1638 61 ENST00000337432.9 ENST00000674280.1 downstream upstream none CTAGCCCAGCAAATGATCAGCCTTGCAAATAATCACAGATTAGCT___GTAATTTTAACCAATCAGATGACAACAAAGATTGATAGAAATCAGGCCTTGCTTGTTCCTGCATTAG|AAAGAAGACATAGCTCATCCAGCAAGCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGTGTTCTTAGCGCATCCTCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGAACACCAGGCCAATGCATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAAT___CATGACACCCTCTGTGAAAGTGGAAAAGATTCATCCGAAAAT LAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPAL|eRRHSSSSKPPLAVPPTSVFSFFPSLSKSKGGSASGSNRSSSGGVLSASSSSSKLLKSPKEKLQLRGNTRPMHPIQQSRVPHGRIMTPSVKVEKIHPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12511 PDE8A::ENSG00000291159 ENSG00000073417.15::ENSG00000291159.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:84982348:+ chr15:85523671-85682376:+ chr15:85525579:+ ENSG00000291159 ENSG00000291159.1 lncRNA + + chr15:84631451-84647478:+ chr15:84637347:+ chr15:85174682-85190709:+ chr15:85180578:+ chr15:84984457,chr15:84984455 chr15:84635425,chr15:84635420 NA NA chr15:85527688,chr15:85527686 chr15:85178656,chr15:85178651 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 11 6 85 78 ENST00000310298.8 ENST00000348993.9 downstream upstream low_entropy(1),mismatches(2) CCGCGGCACCGCCGCTGTCGTCCGGCGGGCCGCGCCTCCCGCAGGGCCAGAAGACGGCCGCCTTGCCCCGGACCCGCGGCGCCGGCCTCTTGGAGTCGGAGCTTCGCGACGGCAGCGGCAAGAAG|CCCTGCCTGATGTGGCTCTGGGAATTCCTGCAGAGAAGAGCAGGGGTGGCCAGGAGATAGTGAGCAGCTCCCAG___GAGGCATGGAGGGATCCAGAACCTGGACTGAAGAACCACCTAGAAATAACTCAGCAG AAPPLSSGGPRLPQGQKTAALPRTRGAGLLESELRDGSGKK|pclmwlweflqrragvarr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12512 PRPF18::BEND7 ENSG00000165630.15::ENSG00000165626.19 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRPF18 ENSG00000165630.15 protein_coding + + chr10:13586939-13668445:+ chr10:13611683:+ chr10:13628939-13710445:+ chr10:13653683:+ BEND7 ENSG00000165626.19 protein_coding - + chr10:13438484-13529014:- chr10:13497655:+ chr10:13480484-13571014:- chr10:13539655:+ chr10:13613252,chr10:13613242 chr10:13490362,chr10:13490349 NA NA chr10:13655252,chr10:13655242 chr10:13532362,chr10:13532349 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none Prp18_domain(2%),pre-mRNA_processing_factor_4_(PRP4)_like(100%)| PRP4(100%),Prp18(0%)| 6 5 9 224 13 ENST00000601460.5 unknown downstream upstream duplicates(3) AAAATTACCTATGACGCTTTCTAGGCAAGAG___GTCATCAGAAGATTGAGAGAAAGAGGAGAACCAATCAGACTATTTGGAGAGACTGATTATGATGCTTTTCA...GTCAGGAGCCTGGAGAGGAAGACACACAGAATGATCTGAAAGTTCATGAGGAAAACACCACAATTGAAGAGTTAGAG___GCGCTTGGAGAGTCCTTAGGGAAAGGCGATGATCATAAAGACATGGACATCATCACCAAATTCCTGAAG|GTAAGCAAGTATCTTCTATTGTCCTTAGAATAAAATGGGACATTTGGACATTGCTCTTACAGTGGGTTCCCTCCAGCACCTGTTCACCTGACCACCATAAAATGGAGCAGTTTAGAGACTTCCAGCGCTCACATTGTCTCACAGGCCAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12515 ARRB1::KLHL35 ENSG00000137486.17::ENSG00000149243.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2194 TRUE 849 ARRB1 ENSG00000137486.17 protein_coding - - chr11:75260122-75351705:- chr11:75310227:- chr11:74971166-75062749:- chr11:75021271:- KLHL35 ENSG00000149243.17 protein_coding - - chr11:75422394-75433203:- chr11:75425581:- chr11:75133438-75144248:- chr11:75136626:- chr11:75299452,chr11:75299457 chr11:75426605,chr11:75426607 NA NA chr11:75010496,chr11:75010501 chr11:75137650,chr11:75137652 NA NA sense sense out-of-frame intron CDS/splice-site duplication high none |Kelch_motif(69%) |Kelch_1(39%) 2 3 15 32 132 ENST00000420843.7 ENST00000539798.3 upstream downstream duplicates(3),mismatches(2) CGCCGCGGACCTCCCTGCGACCGTCGCGGACCATGGGCGACAAAGGGACCCG___GTTACATGCCAGGCGCATACAGACGTTGGCCTTTCATCCCCCTCAACACCCTGGAGCAGGCTGTGTTGCCCTATTATCCAG|CTGTTCGCGGTGGGTGGCTTCGACGGCCTGAGGCGCCTGCACAGCGTGGAGCGCTACGACCCCTTCTCCAACACCTGGGCGGCCGCCGCGCCCCTCCCGGAGGCCGTGAGCTCGGCGGCGGTGGCGTCCTGCGCGGGCAAGCTCTTCGTGATTGGGGGCGCCAGGCAGGGCGGCGTCAACACGGACAAG___GTGCAGTGCTTTGACCCCAAGGAGGACCGGTGGAGCCTGCGGTCACCAGCACCCT MGDKGTrlharriqtlafhppqhpgagcvallss|csrwvasta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-326 chr11:75335092-75335186:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 75062632|75062632 FALSE|FALSE 75137683|75139671 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12516 ARRB1::KLHL35 ENSG00000137486.17::ENSG00000149243.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2194 TRUE 849 ARRB1 ENSG00000137486.17 protein_coding - - chr11:75260122-75351705:- chr11:75351588:- chr11:74971166-75062749:- chr11:75062632:- KLHL35 ENSG00000149243.17 protein_coding - - chr11:75422394-75433203:- chr11:75425581:- chr11:75133438-75144248:- chr11:75136626:- chr11:75299452,chr11:75299457 chr11:75426605,chr11:75426607 NA NA chr11:75010496,chr11:75010501 chr11:75137650,chr11:75137652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Kelch_motif(69%) |Kelch_1(39%) 0 1 7 305 132 ENST00000360025.7 ENST00000539798.3 upstream downstream duplicates(2),mismatches(2) CAGGGAGCCGGGAGCGGGCTGGCCCGCGCTCCTCCTGCTGGCTGGGGATTTTCCAGCCTGGGCGCTGACGCCGCGGACCTCCCTGCGACCGTCGCGGACCATGGGCGACAAAGGGACCCG|CTGTTCGCGGTGGGTGGCTTCGACGGCCTGAGGCGCCTGCACAGCGTGGAGCGCTACGACCCCTTCTCCAACACCTGGGCGGCCGCCGCGCCCCTCCCGGAGGCCGTGAGCTCGGCGGCGGTGGCGTCCTGCGCGGGCAAGCTCTTCGTGATTGGGGGCGCCAGGCAGGGCGGCGTCAACACGGACAAG___GTGCAGTGCTTTGACCCCAAGGAGGACCGGTGGAGCCTGCGGTCACCAGCACCCTTCTCACAGCGGTGTCTCGAGGCTGTCTCCCTT MGDKGTr|csrwvasta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 75062632|75062632 TRUE|TRUE 75137683|75139671 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12517 ARRB1::KLHL35 ENSG00000137486.17::ENSG00000149243.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2194 TRUE 849 ARRB1 ENSG00000137486.17 protein_coding - - chr11:75260122-75351705:- chr11:75351588:- chr11:74971166-75062749:- chr11:75062632:- KLHL35 ENSG00000149243.17 protein_coding - - chr11:75422394-75433203:- chr11:75423880:- chr11:75133438-75144248:- chr11:75134924:- chr11:75299452,chr11:75299457 chr11:75426605,chr11:75426607 NA NA chr11:75010496,chr11:75010501 chr11:75137650,chr11:75137652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Kelch_motif(33%) |Kelch_1(3%) 2 0 2 305 131 ENST00000360025.7 ENST00000539798.3 upstream downstream mismatches(1) AGCGGGCTGGCCCGCGCTCCTCCTGCTGGCTGGGGATTTTCCAGCCTGGGCGCTGACGCCGCGGACCTCCCTGCGACCGTCGCGGACCATGGGCGACAAAGGGACCCG|GTGCAGTGCTTTGACCCCAAGGAGGACCGGTGGAGCCTGCGGTCACCAGCACCCTTCTCACAGCGGTGTCTCGAGGCTGTCTCCCTTGAGGACACCATCTATGTCATGGGGGGTCTCATGAGCAAAATCTTC MGDKGTr|csaltprrtggacghqhpshsgvsrlsplrtpsmswgvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 75062632|75062632 TRUE|TRUE 75137683|75139671 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12518 ARRB1::KLHL35 ENSG00000137486.17::ENSG00000149243.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2194 TRUE 849 ARRB1 ENSG00000137486.17 protein_coding - - chr11:75260122-75351705:- chr11:75351588:- chr11:74971166-75062749:- chr11:75062632:- KLHL35 ENSG00000149243.17 protein_coding - - chr11:75422394-75433203:- chr11:75422768:- chr11:75133438-75144248:- chr11:75133812:- chr11:75299452,chr11:75299457 chr11:75426605,chr11:75426607 NA NA chr11:75010496,chr11:75010501 chr11:75137650,chr11:75137652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Kelch_motif(25%) |Kelch_1(2%) 0 1 0 305 103 ENST00000420843.7 ENST00000539798.3 upstream downstream duplicates(1) CGCTGACGCCGCGGACCTCCCTGCGACCGTCGCGGACCATGGGCGACAAAGGGACCCG|GAAAGCTGTGGAGTCACTGTGTGTGACGGGAAGGTCCACATCC...GCGGGATGATCGCGGAGAAAGCACCGATAAGGTCTTCACCTTTGACCCCAGCAGTGGGCAGGTGGAGGTCCAGCCATCCCTGCAGCGCTGCACCAGCTCCC MGDKGTr|kaveslcvtgrst NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 75062632|75062632 TRUE|TRUE 75137683|75139671 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12523 UBE2E2::LINC02005 ENSG00000182247.11::ENSG00000242741.2 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2E2 ENSG00000182247.11 protein_coding + + chr3:23203020-23591794:+ chr3:23217312:+ chr3:23244511-23633285:+ chr3:23258803:+ LINC02005 ENSG00000242741.2 lncRNA + + chr3:73805754-73902960:+ chr3:73869776:+ chr3:73854905-73952111:+ chr3:73918927:+ chr3:23466046,chr3:23466043 chr3:73822013,chr3:73822007 NA NA chr3:23507537,chr3:23507534 chr3:73871164,chr3:73871158 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ubiquitin-conjugating_enzyme(12%)| UQ_con(2%)| 8 3 4 115 12 ENST00000335798.8 ENST00000498832.1 downstream upstream duplicates(1) GGCGGCGCTGAGG___GATCTAAAATGTCCACTGAGGCACAAAGAGTTGATGACAGTCCAAGCACTAGTGGAGGAAGTTCCGATGGAGATCAACGTGAAAGTGTTCAGCAAGAACCAGAAAGAGAACAAGTTCAGCCCAAGAAAAAGGAGGGAAAAATATCCAGCAAAACCGCTGCTAAATTGTCAACTAGTGCTAAAAG___AATTCAGAAGGAACTTGCAGAAATCACATTGGACCCTCCTCCCAACTGTAG|GATACCCCATGGTTCTCCTACCACCAGATGCTACTGAGGCTAAACTGACTGGACTGAGGAAAAATATCTGTGGGGAAAACTTTCTTTCAGAATCCAACTTTGAACCAGAGAAATCCATTCTCTTGAAGCTGTCTGCTGTGGAGAAGTTGGCCTTACCAATCTGCCTTTGAAGTTCAAGTTATACAG___GATCTGCGAG MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCr|iphgspttrcy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12525 ENSG00000261130::ABCC1 ENSG00000261130.5::ENSG00000103222.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2196 TRUE 850 ENSG00000261130 ENSG00000261130.5 protein_coding + + chr16:15395754-15515348:+ chr16:15434759:+ chr16:15489611-15609205:+ chr16:15528616:+ ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16076326:+ chr16:16042995-16237114:+ chr16:16170183:+ chr16:15499220,chr16:15499219 chr16:16072719,chr16:16072715 NA NA chr16:15593077,chr16:15593076 chr16:16166576,chr16:16166572 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(49%) Mpv17_PMP22(100%)|ABC_membrane(41%),ABC_tran(100%) 2 2 9 107 154 ENST00000568222.5 ENST00000399408.7 downstream upstream mismatches(3) GAGCAGCGTCACGGGCGCCCGGCCCGTTAAAACGCTGCTGGCTGGAGCCACCTCCCTCCCTGCAGCCCGCAACGGGAATGGAGTAAAGGGAGACCCGTCGACCTGGCCACGGGGATCAGCGATGGAATTAAAGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTATGGGGCGGTGGAGGAGACGGCTTGGAAAACGGAGAGACTGGGGAGAA|GCGGGGGCACGAACAGCATCACCGTGAGGAATGCCACATTCACCTGGGCCAGGAGCGACCCTCCCACACTGAATGG___CATCACCTTCTCCATCCCCGAAGGTGCTTTGGTGGCCGTGGTGGGCCAGGTGGGCTGCGGAAAGTCGTCCCTGCTCTCAGCCCTCTTGGCTGAGATGGACAAAGTGGAGGGGCACGTGGCTATCAAG___GGCTCCGTGGCCTATGTGCCACAGCAGGCCTGGATTCAGA...GATACAGGCCTGTGCCCTCCTCCCAGACCTGGAAATCCTGCCCAGTGGGGATCGGACAGAGATTGGCGAGAAG___GGCGTGAACCTGTCTGGGGGCCAGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12526 ENSG00000261130::ABCC1 ENSG00000261130.5::ENSG00000103222.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2196 TRUE 850 ENSG00000261130 ENSG00000261130.5 protein_coding + + chr16:15395754-15515348:+ chr16:15434759:+ chr16:15489611-15609205:+ chr16:15528616:+ ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16090405:+ chr16:16042995-16237114:+ chr16:16184262:+ chr16:15499220,chr16:15499219 chr16:16072719,chr16:16072715 NA NA chr16:15593077,chr16:15593076 chr16:16166576,chr16:16166572 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion medium none |ABC_transporter(54%),ABC_transporter_transmembrane_region(49%) Mpv17_PMP22(100%)|ABC_membrane(41%),ABC_tran(31%) 0 1 1 107 92 ENST00000568222.5 ENST00000677164.1 downstream upstream none GGGAGACCCGTCGACCTGGCCACGGGGATCAGCGATGGAATTAAAGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTATGGGGtGG...GAAAACGGAGAGACTGGGGAGAA|ACGCGGATCTTGGTCACGCACAGCATGAGCTACTTGCCGCAGGTGGACGTCATCATCGTCATGAGTGGCGGCAAGATCTCTGAGATGGGCTCCTACCAGGAGCTcCTGGCTCGAGACGGCGCCTTCGCTGAGTTCCT...TGGCATGCTGGTGACGGACAGTGCAGGGAAGCAACTGCAGAG___ACAGCTCAGCAGCTCCTCCTCCTATAGTGGGGACATCAGCAGGCACCACAACAGCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12527 BMERB1::ABCC1 ENSG00000166780.11::ENSG00000103222.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1250 TRUE 2197 TRUE 851 BMERB1 ENSG00000166780.11 protein_coding + + chr16:15434475-15625028:+ chr16:15434759:+ chr16:15528332-15718885:+ chr16:15528616:+ ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16076326:+ chr16:16042995-16237114:+ chr16:16170183:+ chr16:15499220,chr16:15499219 chr16:16072719,chr16:16072715 NA NA chr16:15593077,chr16:15593076 chr16:16166576,chr16:16166572 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(49%) |ABC_membrane(41%),ABC_tran(100%) 2 2 9 107 154 ENST00000566490.5 ENST00000399408.7 downstream upstream mismatches(3) GAGCAGCGTCACGGGCGCCCGGCCCGTTAAAACGCTGCTGGCTGGAGCCACCTCCCTCCCTGCAGCCCGCAACGGGAATGGAGTAAAGGGAGACCCGTCGACCTGGCCACGGGGATCAGCGATGGAATTAAAGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTATGGGGCGGTGGAGGAGACGGCTTGGAAAACGGAGAGACTGGGGAGAA|GCGGGGGCACGAACAGCATCACCGTGAGGAATGCCACATTCACCTGGGCCAGGAGCGACCCTCCCACACTGAATGG___CATCACCTTCTCCATCCCCGAAGGTGCTTTGGTGGCCGTGGTGGGCCAGGTGGGCTGCGGAAAGTCGTCCCTGCTCTCAGCCCTCTTGGCTGAGATGGACAAAGTGGAGGGGCACGTGGCTATCAAG___GGCTCCGTGGCCTATGTGCCACAGCAGGCCTGGATTCAGA...GATACAGGCCTGTGCCCTCCTCCCAGACCTGGAAATCCTGCCCAGTGGGGATCGGACAGAGATTGGCGAGAAG___GGCGTGAACCTGTCTGGGGGCCAGAAGC MELKQSLSTHLEAEKPLRRYGAVEETAWKTERLGR|sGGTNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12528 BMERB1::ABCC1 ENSG00000166780.11::ENSG00000103222.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2197 TRUE 851 BMERB1 ENSG00000166780.11 protein_coding + + chr16:15434475-15625028:+ chr16:15434759:+ chr16:15528332-15718885:+ chr16:15528616:+ ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16090405:+ chr16:16042995-16237114:+ chr16:16184262:+ chr16:15499220,chr16:15499219 chr16:16072719,chr16:16072715 NA NA chr16:15593077,chr16:15593076 chr16:16166576,chr16:16166572 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |ABC_transporter(54%),ABC_transporter_transmembrane_region(49%) |ABC_membrane(41%),ABC_tran(31%) 0 1 1 107 92 ENST00000300006.9 ENST00000677164.1 downstream upstream none GGGAGACCCGTCGACCTGGCCACGGGGATCAGCGATGGAATTAAAGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTATGGGGtGG...GAAAACGGAGAGACTGGGGAGAA|ACGCGGATCTTGGTCACGCACAGCATGAGCTACTTGCCGCAGGTGGACGTCATCATCGTCATGAGTGGCGGCAAGATCTCTGAGATGGGCTCCTACCAGGAGCTcCTGGCTCGAGACGGCGCCTTCGCTGAGTTCCT...TGGCATGCTGGTGACGGACAGTGCAGGGAAGCAACTGCAGAG___ACAGCTCAGCAGCTCCTCCTCCTATAGTGGGGACATCAGCAGGCACCACAACAGCACC KTERLGR|nadlghaqhellaaggrhhrhewrqdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12532 TAOK1::NUFIP2 ENSG00000160551.12::ENSG00000108256.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TAOK1 ENSG00000160551.12 protein_coding + + chr17:29390363-29551903:+ chr17:29451680:+ chr17:27717381-27878921:+ chr17:27778698:+ NUFIP2 ENSG00000108256.9 protein_coding - + chr17:29255839-29294148:- chr17:29279367:+ chr17:27582857-27621166:- chr17:27606385:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 3 1 6 124 16 ENST00000261716.8 unknown downstream upstream none GCGCCTGCCTGCTCCGCCCCAGACCTGTCGGCGAAAGG___TAGTTTATGCCAACGTGACTTCATTCATACAGATGAACCAAGGATCGGGATAGCAGTATAAAATTAGAATCAAGACAGCTGACTGCTCAGCAGGATGCCATCAACTAACAGAGCAGGCAGCCTGAAGGACCCTGAAATTGCAGAGCTCTTCTTCAAAGAAGATCCAGAGAAGCTCTTCACAGATCTCAGAGAAATTGGCCATGGAAGCTTTGGAGCAGTGTATTTT|ATCATTTACATGGTTGAAAATACAAAGCAGAAGACCTTTATTATACCTCTGCCTGCACTATTCCAAGAAACTGATCTTCTAGTCAACAGAAA...CAGCCTCCAGAGTAGCTGGGATTACAGGCATGCACCACGATGCCCAGTTCCGCCgCGTTGGCCTGGCTGGTTTCGAACTCCTGACCTCAAGTGATCTGCCC MPSTNRAGSLKDPEIAELFFKEDPEKLFTDLREIGHGSFGAVYF|iiymventkqktfiiplpalfqetdllvnr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4523 chr17:29390662-29390730:+ FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase TAO1 STE STE20 TAO Q7L7X3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12533 CHEK2::ENSG00000226471 ENSG00000183765.24::ENSG00000226471.7 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28724977:- chr22:29083731-29138410:- chr22:29120965:- ENSG00000226471 ENSG00000226471.7 lncRNA + - chr22:28800683-28848559:+ chr22:28810934:- chr22:29196671-29244547:+ chr22:29206922:- chr22:28722251,chr22:28722255 chr22:28821211,chr22:28821212 NA NA chr22:29118239,chr22:29118243 chr22:29217199,chr22:29217200 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none FHA_domain(100%)| FHA(100%),HscB_4_cys(100%)| 4 1 5 135 8 ENST00000416671.5 unknown upstream downstream duplicates(1),mismatches(1) CGGGAGTCGGATGTTGAGGCTCAGCAGTCTCAgGGCAGCAGTGaCTGTTCcCAGCCCCATGGaAGCGgTACtCAGTtCCAAGGCTCCTCCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCcGCACGATcCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACgCTGAGCTC...CTTCAGGATGGATTTGCCAATCTTG___AATGTGTGAATGACAACTACTGGTTTGGGAGGGACAAAAGCTGTGAATATTGCTTTGATGAACCACTGCTGAAAAGAACAGATAAATACCGAACATACAGCAAGAAACACTTTCGGATTTTCAGG___GAAGTGGGTCCTAAAAACTCTTACATTGCATACATAGAAGATCACAGTGGCAATGGAACCTTTGTAAATACAGAGCTTGTAGGGAAAGGAAAACGCCGTCCTTTGAATAACAATTCTGAAATTGCACTGTCACTAAGCAGAAATAAAG|AAAGTGGTGGGCAGCCACAGGACCGAAGGAAACACCCGTCAACATAACCAAGAGGATTTCCTGCCCACACACTCAGCGTCTCAACG...TTTGAACGGTTTGTAGATGTCTTTCTTTAGAAATATACTAATAAAATTGGAAATACGGGATCAGTAGTCCTAGCAAACCAAAATGACTTCATCCATTTCTGGAGAATAATGAAGTCCTATGCATTCAAGTTGTTTTCTTTTTTCTTCTTTCTTTCTTTTTTTTTTTAAGACCTTTTCTTGGTTATGACAAATGTAACACAATAATTTTT...TTTTTCCATTAATTGGTATGTTTAAAACAATGAGCAACATACCTTCCTTGCTAGAATCTGCCTCTTGACTCTAGCATTGGAATCTATAAAATACAATGCCA LQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNK|esggqpqdrrkhpst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 12539 DDHD1::ENSG00000237356 ENSG00000100523.17::ENSG00000237356.7 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DDHD1 ENSG00000100523.17 protein_coding - - chr14:53036745-53153323:- chr14:53152261:- chr14:53503463-53620041:- chr14:53618979:- ENSG00000237356 ENSG00000237356.7 lncRNA + - chr14:53169010-53883740:+ chr14:53241880:- chr14:53635728-54350458:+ chr14:53708598:- chr14:53141028,chr14:53141033 chr14:53244942,chr14:53244944 NA NA chr14:53607746,chr14:53607751 chr14:53711660,chr14:53711662 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 1 4 158 6 ENST00000673822.2 unknown upstream downstream none CTGGAAGCCCTTCATCGGCTACGACTCGCTCCGCATCGAGCTCGCCTTCCGGACCCTGCTGCAGACCACGGGTGCCCGGCCCCAGGGCGGGGACCGGGACGGCGACCATGTGTGCTCCCCCACGGGCCCAGCCTCCAGTTCCGGAGAAGATGACGATGAGGACCGCGCCTGCGGCTTCTGCCAGAGTACGACGGGGCACGAGCCGGAGATGGTGGAGCTTGTGAACATCGAGCCTGTGTGCGTGCGGGGCGGCCTCTACGAGGTGGATGTGACCCAAGGAGAGTGCTACCCGGTGTACTGGAACC|TCTTTCTTCAAAGATATTAACTGCCAGCGCTTCTGTTGCCCACAAAGTCAG___TCATTTTTAAGCCTGACCTGCAGGGTGCGATGCTTAACATCTGGGACGTGATCAATCCACCTCTTCATTACCCTTGTGGGTTGCC WKPFIGYDSLRIELAFRTLLQTTGARPQGGDRDGDHVCSPTGPASSSGEDDDEDRACGFCQSTTGHEPEMVELVNIEPVCVRGGLYEVDVTQGECYPVYWN|lflqry* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12541 FNDC3B::PLOD2 ENSG00000075420.13::ENSG00000152952.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FNDC3B ENSG00000075420.13 protein_coding + + chr3:172039578-172401669:+ chr3:172346440:+ chr3:171757368-172119459:+ chr3:172064230:+ PLOD2 ENSG00000152952.14 protein_coding - + chr3:146035139-146163725:- chr3:146103479:+ chr3:145752926-145881512:- chr3:145821266:+ chr3:172347177,chr3:172347177,chr3:172347174 chr3:146088180,chr3:146088181,chr3:146088174 NA NA chr3:172064967,chr3:172064967,chr3:172064964 chr3:145805967,chr3:145805968,chr3:145805961 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Fibronectin_type_III_domain(59%)| fn3(66%)| 3 0 4 173 2 ENST00000415807.7 unknown downstream upstream none GTTCTGAAAGTCTCCCTGTTCGCACACTAAGCATTGCACCAGGTCAATGTCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGAAGTCCACTTAGAG...GTTCCTGCATCGGAAAGTGGCTGTGAGGTCTCAGAGTACAGCGTGGAGATGACGGAGCCCGAAGACGTAGCCTCGGAAGTGTACCATGGCCCAGAGCTGGAGTGCACCGTCGGCAACCTGCTTCCTGGAACCGTGTATCGCTTCCGGGTGAGGGCTCTGAATGATGGAGGG___TATGGTCCCTATTCTGATGTCTCAGAAATTACCACTGCTGCAGGGCCTCCTGGACAATGCAAAGCACCTTGTATTTCTTGTACACCTGATGGATGTGTCTTAGTGGGTTGGGAG|AGACTGGGTCTCACTTTCTGGCCCCGGCTGGAGTGCAAGGACACAATCACAGGTCATTGCAGCCTCGAACTCCTGGGATCAATCAATCCTCAGCCTCTCATATAGCTGGGACTATAGGCACGCACCACCATGCCTGACTAGATTTTAAGAATCTTTTTACTAAATGG VPASESGCEVSEYSVEMTEPEDVASEVYHGPELECTVGNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWE|rlgltfwprleckdtitghcslellgsinpqpli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12542 B3GNTL1::SLC9A8 ENSG00000175711.9::ENSG00000197818.12 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2201 FALSE NA B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82956695:- chr17:80900025-81009685:- chr17:80914571:- SLC9A8 ENSG00000197818.12 protein_coding + + chr20:49812713-49892242:+ chr20:49877981:+ chr20:48429250-48508779:+ chr20:48494518:+ chr17:82953194,chr17:82953198,chr17:82953203 chr20:49875448,chr20:49875444,chr20:49875444 NA NA chr17:80911070,chr17:80911074,chr17:80911079 chr20:48491985,chr20:48491981,chr20:48491981 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Glycosyl_transferase_family_2(100%)|Sodium/hydrogen_exchanger_family(26%) Glyco_tranf_2_3(100%),Glycos_transf_2(100%)|Na_H_Exchanger(8%) 1 0 6 56 113 ENST00000320865.4 ENST00000417961.5 upstream upstream none TGGCATTCTGTGACGTGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAG___GAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTG|AAACATGTGTGTTTGCATTTCTTGGCCTGTCCATTTTTAGTTTTCCTCACAAGTTTGAAATTTCCTTTGTCATCTGGTGCATA___GTGCTTGTACTATTTGGCAGAGCGGTAAACATTTTCCCTCTTTCCTACCTCCTGAATTTCTTCCGGGATCATAAAA AFCDVDENKIRKGFYCHEDSQERPKPRIPILHFRAARPPFVICVKL|khvclhflacpflvfltslkfplssga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12546 FNDC3B::ENSG00000243415 ENSG00000075420.13::ENSG00000243415.2 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FNDC3B ENSG00000075420.13 protein_coding + + chr3:172039578-172401669:+ chr3:172346440:+ chr3:171757368-172119459:+ chr3:172064230:+ ENSG00000243415 ENSG00000243415.2 lncRNA + + chr3:146064042-146105204:+ chr3:146103479:+ chr3:145781829-145822991:+ chr3:145821266:+ chr3:172347177,chr3:172347177,chr3:172347174 chr3:146088180,chr3:146088181,chr3:146088174 NA NA chr3:172064967,chr3:172064967,chr3:172064964 chr3:145805967,chr3:145805968,chr3:145805961 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Fibronectin_type_III_domain(59%)| fn3(66%)| 3 0 2 173 2 ENST00000415807.7 unknown downstream upstream none GTTCTGAAAGTCTCCCTGTTCGCACACTAAGCATTGCACCAGGTCAATGTCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGAAGTCCACTTAGAG...GTTCCTGCATCGGAAAGTGGCTGTGAGGTCTCAGAGTACAGCGTGGAGATGACGGAGCCCGAAGACGTAGCCTCGGAAGTGTACCATGGCCCAGAGCTGGA...GGCAACCTGCTTCCTGGAACCGTGTATCGCTTCCGGGTGAGGGCTCTGAATGATGGAGGG___TATGGTCCCTATTCTGATGTCTCAGAAATTACCACTGCTGCAGGGCCTCCTGGACAATGCAAAGCACCTTGTATTTCTTGTACACCTGATGGATGTGTCTTAGTGGGTTGGGAG|AGACTGGGTCTCACTTTCTGGCCCCGGCTGGAGTGCAAGGACACAATCACAGGTCATTGCAGCCTCGAACTCCTGGGATCAATCAATCCTCAGCCTCTCATATAGCTGGGACTATAGGCACGCACCACCATGCCTGACTAGATTTTAAGAATCTTTTTACTAAATGG GNLLPGTVYRFRVRALNDGGYGPYSDVSEITTAAGPPGQCKAPCISCTPDGCVLVGWE|rlgltfwprleckdtitghcslellgsinpqpli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12547 RIPOR3::EYA2 ENSG00000042062.13::ENSG00000064655.19 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIPOR3 ENSG00000042062.13 protein_coding - - chr20:50586108-50691542:- chr20:50680547:- chr20:49202645-49308079:- chr20:49297084:- EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47169139:+ chr20:45523263-45817492:+ chr20:45797787:+ chr20:50669934,chr20:50669940,chr20:50669942,chr20:50670009,chr20:50669996,chr20:50669941,chr20:50669983,chr20:50669981 chr20:47167895,chr20:47167889,chr20:47167889,chr20:47167450,chr20:47167463,chr20:47167889,chr20:47167476,chr20:47167478 NA NA chr20:49286471,chr20:49286398,chr20:49286477,chr20:49286479,chr20:49286546,chr20:49286533,chr20:49286478,chr20:49286520,chr20:49286518 chr20:45796541,chr20:45796849,chr20:45796535,chr20:45796535,chr20:45796096,chr20:45796109,chr20:45796535,chr20:45796122,chr20:45796124 NA NA sense sense unknown intron CDS/splice-site inversion high none |haloacid_dehalogenase-like_hydrolase(76%) |Hydrolase(16%) 0 3 1 3 11 unknown ENST00000357410.7 upstream upstream none GCACAGGCAGCCTTTGGCCAGGTCGGCGTGAGATTACCAGCCTCGCACAGGCGGCTGCACACGACACGTCTGCAATACCTATTCTGAAGG|GATTGTGACCAGATCCACGTTGATGACGTCTCATCAGATGACAATGGCCAAGAT...TACAACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGGGTGAAGGAGATGTACAATACCTACAAGAACAACGTTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12549 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000291280.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000291280.1 lncRNA - - chr21:13937946-13980437:- chr21:13970110:- chr21:15310267-15352758:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 3 4 7 ENST00000428809.5 ENST00000429521.5 downstream downstream none CGCGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCACCGGGTAT...TGCAGAAGATTACGCTATTTCTTGCCGTTTGACAAA___CATTTTCCATGAACTGTGTGTGGATTTATTGCCTGCATTGGATGACAAAGTCTTGAGTATTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12550 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 2202 TRUE 852 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13958185:- chr21:15281895-15352232:- chr21:15330506:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 3 4 8 ENST00000428809.5 ENST00000451663.5 downstream downstream mismatches(1) CGCGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|CATTTTCCATGAACTGTGTGTGGATTTATTGCCTGCATTGGATGACAAAGTCTTGAGTATTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12551 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA TRUE 2202 TRUE 852 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13970110:- chr21:15281895-15352232:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 3 4 7 ENST00000428809.5 ENST00000451663.5 downstream downstream none CGCGGCCTTTGTCTCACTTCAGCCAGAGAGCGGGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCACCGGGTAT...TGCAGAAGATTACGCTATTTCTTGCCGTTTGACAAA___CATTTTCCATGAACTGTGTGTGGATTTATTGCCTGCATTGGATGACAAAGTCTTGAGTATTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12552 PNPLA7::DPH7 ENSG00000130653.16::ENSG00000148399.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PNPLA7 ENSG00000130653.16 protein_coding - - chr9:137459952-137550402:- chr9:137515379:- chr9:140354404-140444854:- chr9:140409831:- DPH7 ENSG00000148399.13 protein_coding - - chr9:137554444-137578925:- chr9:137555648:- chr9:140448896-140473377:- chr9:140450100:- chr9:137506125,chr9:137506128,chr9:137506128 chr9:137559808,chr9:137559741,chr9:137559808 NA NA chr9:140400577,chr9:140400580,chr9:140400580 chr9:140454260,chr9:140454193,chr9:140454260 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cyclic_nucleotide-binding_domain(35%)| cNMP_binding(85%)| 2 1 1 36 279 ENST00000406427.6 ENST00000277540.7 upstream downstream mismatches(1) CCGTCCACCATCCTCCGGCTTCCAGCTGCGGCTTTTCATGGAGTTTTTGAGAAATATCCGGAAACTCTGGTGAGGGTGGTGCAG___ATCATCATGGTGCGGCT...AAAAGCCACCGCGGCTCCAGGAGTCCTGTGACTCAG___CAGATCACGGGGGCGGCCGCCCGGCAGCTGCTGGGCCCCTGCTGAAGAGGAGCCACTCCGTCCCCGCGCCTTCCATTCGCAAACAGATCTTGGAGGAGCTGGAGAAGCCCGGGGCAGGTGACCCTGACCCTTCGGCCCCACAAG|AGGAGAGGCAGGAGGCGACGGTCCTGACATCTCACACATTGCCCGACTCGCTGGTGTATGGAGCCGACTGGTCCTGGCTGCTCTTCCGTTCTCTGCAGCGGGCCCCCTCGTGGTCCTTTCCTAGCAACCTAGGAACCAAGACGGCAGACCTGAAGGGTGCAAGCGAGTTGCCAACACCCTGTCATGAATGCAGAGAGGATAACGATGGGGAGGGCCATGCCAGACCCCAGAGTGGAATGAAGCCACTCACAG KPPRLQESCDSaDHGGGRPAAAGPLLKRSHSVPAPSIRKQILEELEKPGAGDPDPSAPQ|eERQEATVLTSHTLPDSLVYGADWSWLLFRSLQRAPSWSFPSNLGTKTADLKGASELPTPCHECREDNDGEGHARPQSGMKPLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney,Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12553 SGPP2::ULK4 ENSG00000163082.10::ENSG00000168038.11 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SGPP2 ENSG00000163082.10 protein_coding + + chr2:222424543-222562621:+ chr2:222474726:+ chr2:223289262-223427340:+ chr2:223339445:+ ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- chr2:222479380 chr3:41274349 NA NA chr2:223344099 chr3:41315840 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none PAP2_superfamily(5%)| PAP2(0%)| 0 1 2 14 10 ENST00000321276.8 ENST00000301831.9 downstream downstream none TTCTACTATTACCTATTCCAATTTTCAGCTGCTTTGGGCCAAGAAGTGTTCTACATCACGTTTCTTCCATTCACTCACTGGAATATTGACCCTTATTTATCCAGAAGATTGATCATCATATGGGTT|ATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGG___TTCATTTGCCGACAGTGCGG FYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWV|ITSNEKHLESLKNAGSLLRALERLAPGSGSFADSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12554 MB21D2::FGF12 ENSG00000180611.7::ENSG00000114279.15 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- FGF12 ENSG00000114279.15 protein_coding - - chr3:192139390-192767764:- chr3:192360538:- chr3:191857179-192485553:- chr3:192078327:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Fibroblast_growth_factor(98%) |FGF(34%) 2 0 1 77 27 ENST00000392452.3 ENST00000450716.5 upstream downstream none GGCTCCCACCGCCAACAAGGCAGCCTCCCTGGGCTGTAACAACAAGCCTGCGTTCCCGGAGCTGGATTTCAGGTCGGGAGCTCGGGTGGAGGAATTGAACAAACTCATCCAAGAATTTACGAAGCACGACCAGCGGGAATACGACGACCAGAGAGCGCTGGAGATTCACACAGCCAAGGATTTCATCTTTTCCATGCTGG|AACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCC...GATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACA___CTCTCTTCAATCTAATTCCCGTGGGCCTGCGTGTAGTGGCCATCCAAG APTANKAASLGCNNKPAFPELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSML|ePQLKGIVTRLFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 12555 KCND3::PPM1E ENSG00000171385.11::ENSG00000175175.6 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KCND3 ENSG00000171385.11 protein_coding - - chr1:111770662-111989668:- chr1:111981621:- chr1:112313284-112532290:- chr1:112524243:- PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58969539:+ chr17:56833215-57062540:+ chr17:57046900:+ chr1:111822911,chr1:111822911,chr1:111915746,chr1:111822915 chr17:58962859,chr17:58962864,chr17:58793373,chr17:58962855 NA NA chr1:112365533,chr1:112365533,chr1:112458368,chr1:112365537 chr17:57040220,chr17:57040225,chr17:56870734,chr17:57040216 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BTB/POZ_domain(100%),Ion_transport_protein(80%),Shal-type_voltage-gated_potassium_channels__N-terminal(100%)|Protein_phosphatase_2C(88%) BTB_2(100%),BTB_3(100%),Ion_trans(0%),Ion_trans_2(0%),Shal-type(100%)|PP2C(74%) 1 0 2 18 69 ENST00000302127.5 ENST00000308249.4 upstream upstream none CCGAACTGGGCTTTCTTCTCTTCTCCCTCACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCCGAGAAGGGCTCCTCGGCCAGCAAGTTCACAAGCATCCCTGCCTCGTTTTGGTACACCATTGTCACCATGACCACACTGGG|GACCAGGAAGAACAAGCTTACTTTGCAGTGTTT...TTAACTTAGTCCGCCAGGAGATGTTCCCCCATGATCCTGCTGAGGCCCTGTGCAGGGCCTTCCGGGTCACTGATGAGCGGTTTGTGCAGAAAGCAGCCAGGGAG___AGCTTAAGATGTGGGACCACAGGAGTGGTGACTTTCATCAGAGGCAACATGCT ELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPASFWYTIVTMTTLg|trknkltlqc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12556 PTPRG::ITPRID1 ENSG00000144724.20::ENSG00000180347.15 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:62003497:+ chr3:61547243-62283284:+ chr3:61989171:+ ITPRID1 ENSG00000180347.15 protein_coding + + chr7:31514090-31656504:+ chr7:31642176:+ chr7:31553704-31696118:+ chr7:31681790:+ chr3:62077913 chr7:31611378 NA NA chr3:62063587 chr7:31650992 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Eukaryotic-type_carbonic_anhydrase(43%)|Sperm-specific_antigen_2_C-terminus(100%) Carb_anhydrase(7%)|SSFA2_C(100%) 1 0 2 47 3 ENST00000474889.6 ENST00000615280.5 downstream upstream none AAGAATACCAGGAACTGCAACTCGATGGCTTCGACAATGAGTCTTCTAACAAAACCTGGATGAAAAACACAGGGAAAACAG___TCGCCATCCTTCTGAAAGACGACTATTTTGTCAGTGGAGCTGGTCTACCTGGCAGATTCAAAGCTGAGAAGGTGGAATTTCACTGGG...GCAATGGCTCAGCGGGCTCTGAACACAGCATCAATGGCAGGAGGTTTCCTGTTGAG|GTGCCAGGGTGGACAGAGCAAATAGCTGCCAGTCTGACAGCAGCGGGTTCCTGGAGGAGCCGCTGGAACCGCTGCCCCTCCAG___ATGCCTTCCTTGCCAAACAGCCAGAGTCCTGCTG NGSAGSEHSINGRRFPVE|vpgwteqiaasltaagswrsrwnrcpsrclpcqtarvl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12559 KCNJ15::KCNJ6 ENSG00000157551.19::ENSG00000157542.11 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KCNJ15 ENSG00000157551.19 protein_coding + + chr21:38155549-38307357:+ chr21:38157085:+ chr21:39527643-39679279:+ chr21:39529179:+ KCNJ6 ENSG00000157542.11 protein_coding - + chr21:37607373-38121345:- chr21:38118817:+ chr21:38979675-39493439:- chr21:39490911:+ chr21:38172531,chr21:38172529,chr21:38172530 chr21:38107392,chr21:38107391,chr21:38107388 NA NA chr21:39544625,chr21:39544623,chr21:39544624 chr21:39479486,chr21:39479485,chr21:39479482 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 1 1 17 7 ENST00000472602.1 unknown downstream upstream none GCAAGACATATCTGCTTCTCCTTCACCTTCCACTATGATT___ACAAACCTTGGAAATCAAGAAAGTTCTGGAATGATGAAGCTGTTCATGCCAAGACCGAAAG...TAATGACCAAGCAGCGTCTTCAGAGGAAGGATAGCTGTACAGCGTGGTGAAGGACTCAATGAGAAG|AAGGCAGCGTTTCCCTTAGAGGAGCACAGTGGGCTGGGCAGCAACAGTGGATGACGTGCGTATTACGGCACTGCTGGGcAgCAaCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12560 KCNJ15::DSCR4 ENSG00000157551.19::ENSG00000184029.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KCNJ15 ENSG00000157551.19 protein_coding + + chr21:38155549-38307357:+ chr21:38157085:+ chr21:39527643-39679279:+ chr21:39529179:+ DSCR4 ENSG00000184029.9 lncRNA - + chr21:37951425-38121360:- chr21:38118817:+ chr21:39323728-39493454:- chr21:39490911:+ chr21:38172531,chr21:38172529,chr21:38172530 chr21:38107392,chr21:38107391,chr21:38107388 NA NA chr21:39544625,chr21:39544623,chr21:39544624 chr21:39479486,chr21:39479485,chr21:39479482 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 1 1 17 7 ENST00000472602.1 unknown downstream upstream none GCAAGACATATCTGCTTCTCCTTCACCTTCCACTATGATT___ACAAACCTTGGAAATCAAGAAAGTTCTGGAATGATGAAGCTGTTCATGCCAAGACCGAAAG...TAATGACCAAGCAGCGTCTTCAGAGGAAGGATAGCTGTACAGCGTGGTGAAGGACTCAATGAGAAG|AAGGCAGCGTTTCCCTTAGAGGAGCACAGTGGGCTGGGCAGCAACAGTGGATGACGTGCGTATTACGGCACTGCTGGGcAgCAaCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12563 BCAS4::ZMYND8 ENSG00000124243.19::ENSG00000101040.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1252 TRUE 2203 TRUE 853 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47221474:- chr20:45837859-45985633:- chr20:45850125:- chr20:50797091 chr20:47242092 NA NA chr20:49413628 chr20:45870836 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 8 13 13 5287 528 ENST00000358791.9 ENST00000446994.6 downstream downstream duplicates(3),inconsistently_clipped(1),low_entropy(1),mismatches(2) GCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|CTACTGCTCCTCAGCAGGAAGCGGATGCTGAGGTGAACACAGAAACACTAAATAAGTCCTCCCAGGGGAGCTCCTCGAGCACACAATCAGCACCTTCAGAAACGGCCAGCGCCTCCAAAGAGAAGGAGACGTCAGCTGAGAAAAGCAAGGAGAGTGGCTCG___ACCCTTGACCTTTCTGGCTCCAGAGAGACGCCCTCCTCCATTCTCTTAGGCTCCAACCAAGGCTCTG LPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|llllsrkrmlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12564 BCAS4::ZMYND8 ENSG00000124243.19::ENSG00000101040.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2203 TRUE 853 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47210897:- chr20:45837859-45985633:- chr20:45839542:- chr20:50797091 chr20:47242092 NA NA chr20:49413628 chr20:45870836 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none none none 1 2 4 5287 441 ENST00000358791.9 ENST00000619049.4 downstream downstream mismatches(1) CGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|ACCATTCCCGGAGTAATAAATCCAGTTGGAGCAGCAGTGATGAGAAGAGGGGATCGACACGTTCCGATCACAACACCAGTACCAGCACGAAGAGCCTCCTCCCGAAAGAGTCTCGGCTGGACACCTTCTGGGACTAGCAGTGAATCGGGACACAAACCACCCACCCCATTGGGAGAAAAACCCAGACGCCAGGAAAAGAAGAAAC...TAGAGGACTTTCCCCTTTTTATATTTGTATTAACTTTAACTTATTAAAAAAAAAAAAAGAAAAAGAAAAACGATTTAAAAAAAAAAAAAAA-GCAACCAAC RPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|TIPGVINPVGAAVMRRGDRHVPITTPVPARRASSRKSLGWTPSGTSSESGHKPPTPLGEKPRRQEKKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12565 BCAS4::ZMYND8 ENSG00000124243.19::ENSG00000101040.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2203 TRUE 853 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47212725:- chr20:45837859-45985633:- chr20:45841370:- chr20:50797091 chr20:47242092 NA NA chr20:49413628 chr20:45870836 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 1 4 5287 273 ENST00000358791.9 ENST00000446994.6 downstream downstream mismatches(1) CGAGGCCCGGGCGCAACCACGGGCTCCCAGGCAGCCTCCGCCAGCCGGACCCCGTCGCCCTCCTGATGCTGCTCGTGGACGCTGATCAGCCGGAGCCCATGCGCAGCGGGGCGCGCGAGCTCGCGCTCTTCCTGACCCCCGAtCCTGGGGCCGAG|TTAGCAAAAGGTGTGACAA...AAGT___ACCATTCCCGGAGTAATAAATCCAGTTGGAGCAGCAGTGATGAGAAGAGGGGATCGACACGTTCCGATCACAACACCAGTACCAGCACGAAGAGCC RPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPdPGAE|lakgvt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12569 ELP2::SLC39A6 ENSG00000134759.14::ENSG00000141424.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2205 TRUE 854 ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36133316:+ chr18:33709407-33760520:+ chr18:33713279:+ SLC39A6 ENSG00000141424.13 protein_coding - + chr18:36108531-36129385:- chr18:36120973:+ chr18:33688494-33709348:- chr18:33700936:+ chr18:36135497,chr18:36135497,chr18:36135498 chr18:36114649,chr18:36114705,chr18:36114703 NA NA chr18:33715460,chr18:33715460,chr18:33715461 chr18:33694612,chr18:33694668,chr18:33694666 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none WD_domain__G-beta_repeat(12%)| WD40(0%)| 15 7 7 4317 63 ENST00000358232.11 unknown downstream upstream duplicates(3),mismatches(2) GGCGACATGGTGGCACCCGTGCTGGAGACTTCTCACGTGTTTTGCTGCCCAAACCGGGTGCGGGGAGTCCTGAACTGGAGCTCTGGGCCCAGAGGACTTCTGGCCTTTGGCACGTCCTGCTCCGTGGTGCTCTATGACCCCCTG___AAAAGGGTTGTTGTTACCAACTTGAATGGTCACACCGCCCGAGTCAATTGCATACAGTGGATTTGTAAACAGGATGGCT|AGAAACCAAAATTGGAAATCATAGATGAAGCAGCATGGCTGATAAAGAAAAAAAGAAACGATACAGAATACGGAACTCCAACTTGAAGAAAATCCTGGTCAATATCAAGTGACCAGAATATGAGTGTACAGATGTATTAGGTTAGACTAAAATGTTGAGATATGAACACATCACTTTTCTTTTCTTTTTTTTTTTTTATTTTTTGAGACAG MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDG|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12570 ELP2::SLC39A6 ENSG00000134759.14::ENSG00000141424.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2205 TRUE 854 ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36133316:+ chr18:33709407-33760520:+ chr18:33713279:+ SLC39A6 ENSG00000141424.13 protein_coding - - chr18:36108531-36129385:- chr18:36114474:- chr18:33688494-33709348:- chr18:33694437:- chr18:36135497,chr18:36135497 chr18:36114668,chr18:36114740 NA NA chr18:33715460,chr18:33715460 chr18:33694631,chr18:33694703 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none WD_domain__G-beta_repeat(12%)|ZIP_Zinc_transporter(60%) WD40(0%)|Zip(32%) 0 2 1 4317 16160 ENST00000358232.11 ENST00000269187.10 downstream downstream none CGGGGAGTCCTGAACTGGAGCTCTGGGCCCAGAGGACTTCTGGCCTTTGGCACGTCCTGCTCCGTGGTGCTCTATGACCCCCTG___AAAAGGGTTGTTGTTACCAACTTGAATGGTCACACCGCCCGAGTCAATTGCATACAGTGGATTTGTAAACAGGATGGCT|GAACTGAAGGCTATTTACGAGCAGACTCACAAGA...ATCCACAGGAAGTCTACAATGAATATGTACCCAGAGGGTGCAAGAATAAATGCCATTCACATTTCCACGATACACTCGGCCAGTCAGACGATCTCATTCACCACCATCATGACTACCATCATATTCTCCATCATCAC RGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDG|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12573 ELP2::SLC39A6 ENSG00000134759.14::ENSG00000141424.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2205 TRUE 854 ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36130071:+ chr18:33709407-33760520:+ chr18:33710034:+ SLC39A6 ENSG00000141424.13 protein_coding - - chr18:36108531-36129385:- chr18:36114474:- chr18:33688494-33709348:- chr18:33694437:- chr18:36135497,chr18:36135497 chr18:36114668,chr18:36114740 NA NA chr18:33715460,chr18:33715460 chr18:33694631,chr18:33694703 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |ZIP_Zinc_transporter(60%) |Zip(32%) 0 1 0 3763 16160 ENST00000358232.11 ENST00000269187.10 downstream downstream none GCGGGGAGTCCTGAACTGGAGCTCTGGGCCCAGAGGACTTCTGGCCTTTGGCACGTCCTGCTCCGTGGTGCTCTATGACCCCCTG|GAACTGAAGGCTATTT...CAGACGATCTCATTCACCACCATCATGACTACCATCATATTCTCCATCATCACCACCACCAAAACCACCATCCTCACAGTCACAGCCAGCGCTACTCTCGG RGVLNWSSGPRGLLAFGTSCSVVLYDPL|elkai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12584 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2208 TRUE 855 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 4 3 6 89 52 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(4) GCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___GATCTTAACATAGACGTAAGATCAAATGCAATAGCATGTCAAACAATGTGTAACTCCAGTTATACAAACATTACTGTATCTCATTGGGGATACGAAGCTCTACACACTTGAAGATGG MASGTTTTAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|lasltwqetlllalpefyvlqhppldlnidvrsnaiacqtmcnssytnitvshwgyealht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12585 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2208 TRUE 855 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 1 3 9 89 7 ENST00000644715.2 ENST00000580576.6 downstream upstream duplicates(2) CACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACcTGGCCTCTGGCACCAaCACCA...GAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACA...CCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GCTTTGGTATCAGGATGATTCTGGCCTCATAAAATGAGTTGGGGAGAATTCCCTCTTTTTCTATTGAATGGAATAGTTTCAGAAGGAATGGTACCAGCTCCTCTTTGTACCTCTGGTAGAATTCGGCTGTGAATC...GGTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACC GDIVIIDQFIDr|lwyqddsglik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12587 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2208 TRUE 855 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22097258:+ chr9:21994138-22128102:+ chr9:22097257:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 3 1 8 89 32 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(2) GTGAGGTTGGCACAGCCACCGCTCTGTGGCTCGCTTGGTTCCCTTAGTCCCGAGCGCTCGCCCACTGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACA...TGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAGACCAGTGACTTAG___ATTGGCTTCTCTCACATGGCAAGAAACATTGCTG...CTG___GATCTTAACATAGACGTAAGATCAAATGCAATAGCATGTCAAACAATGTGTAACTCCAGTTATACAAACATTACTGTATCTCATTGGGGATACGAAGC TTACGSLREEIQPGDIVIIDQFIDr|wrtsveevagiwe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12590 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2208 TRUE 855 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22096372:+ chr9:21994138-22128102:+ chr9:22096371:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 0 2 9 89 13 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(4) GAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GTACCAGAGATATAATAATGAGAAACAGACATGCTCCCTCCCCTCATTGAGGTTACAGCTTAGTGTGGAGACACA...CGCACTATGGTATGGAAGGTGCTATGGACACAGTGCTCAAATCCATGATCTACATAG___GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGG...TCAGACCAGTGACTTAG___ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTG___GATCTTAA RTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|yqrynnekqtcslpslrlqlsvet NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12591 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2208 TRUE 855 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120504:+ chr9:21994138-22128102:+ chr9:22120503:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 2 1 1 89 37 ENST00000644715.2 ENST00000428597.6 downstream upstream none GTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAG...ATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GTTAGGAAATTGAAATACAGAAAGATGAAAAGTGATTTGCCCAAGCATATAGATCAAAGCTGTGGCAGAACCAGGACTGGAACCTATATCTCTCTACTAATGGTTTTTTT[t]AAAAAAATAACCTTGTTTCAAAAATATTAAAAAGTCACAAGAAAGGTAAACATGTG VIVTTACGSLREEIQPGDIVIIDQFIDr|lgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12592 BMP7::SULF2 ENSG00000101144.13::ENSG00000196562.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BMP7 ENSG00000101144.13 protein_coding - - chr20:57168753-57266641:- chr20:57265705:- chr20:55743809-55841697:- chr20:55840761:- SULF2 ENSG00000196562.16 protein_coding - + chr20:47656197-47786616:- chr20:47786405:+ chr20:46284941-46415360:- chr20:46415149:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site 5'UTR inversion/5'-5' medium none TGF-beta_propeptide(42%)| TGFb_propeptide(0%)| 0 10 6 453 2792 ENST00000395863.8 unknown upstream upstream mismatches(2) GCCATGGCGGTGGAGGAGGGCGGCGGGCCCGGCGGCCAGGGCTTCTCCTACCCCTACAAGGCCGTCTTCAGTACCCAGGGCCCCCCTCTGGCCAGCCTGCAAGATAGCCATTTCCTCACCGACGCCGACATGGTCATGAGCTTCGTCAACCTCG|GACTCGCCCCGGTCTGCAAACACTCGACTGCCTTTGCCGAAAGCCTCGCGCTCGCCTCCAGCCACACACATTTGCCATTGGAGAGGCCGGCGCCGGCCGCGACCCGCAGCTCAATCGCAGGGCAAACCGAGCTGCCTGTGCGCGCCCGAGAACTCCCCGAGAAATTAACTTCGGCTCAAGTGAAAATAGCAGCTGTTGTCCAGAAATGGCCCGGGAGTAGCATAGAAAGGAGAAACCGGC AMAVEEGGGPGGQGFSYPYKAVFSTQGPPLASLQDSHFLTDADMVMSFVNL|glapvckhstafaeslalasshthlplerpapaatrssiagqtelpvrarelpekltsaqvkiaavvqkwpgssierrnr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12594 PLCG1::TOP1 ENSG00000124181.15::ENSG00000198900.7 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2209 TRUE 856 PLCG1 ENSG00000124181.15 protein_coding + + chr20:41136960-41196801:+ chr20:41137858:+ chr20:39765600-39825441:+ chr20:39766498:+ TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41101238:+ chr20:39657462-39753127:+ chr20:39729878:+ chr20:41153378,chr20:41153384,chr20:41153385 chr20:41100801,chr20:41100801,chr20:41100799 NA NA chr20:39782018,chr20:39782024,chr20:39782025 chr20:39729441,chr20:39729441,chr20:39729439 NA NA sense sense in-frame CDS/splice-site CDS duplication medium none |C-terminal_topoisomerase_domain(100%),Eukaryotic_DNA_topoisomerase_I__DNA_binding_fragment(14%),Eukaryotic_DNA_topoisomerase_I__catalytic_core(100%) |Topo_C_assoc(100%),Topoisom_I(100%),Topoisom_I_N(1%) 3 9 3 165 1689 ENST00000373271.5 ENST00000361337.3 downstream upstream none ACGGCTGCGGGCCCGGCGCGCCCTCGGACGCCGAGGTGCTGCACCTCTGCCGCAGCCTCGAGGTGGGCACCGTCATGACTTTGTTCTACTCCAAGAAGTCGCAGCGACCCGAGCGGAAGACCTTCCAGGTCAAGCTGGAGACGCGCCAGATCACGTGGAGCCGGGGCGCCGACAAGATCGAGGGGGCCA|GACATAAGTGGAAAGAAGTCCGGCATGATAACAAGGTTACTTGGCTGGTTTCCTGGACAGAGAACATCCAAGGTTCCATTAAATACATCATGCTTAACCCTAGTTCACGAATCAAG___GGTGAGAAGGACTGGCAGAAATACGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGAAGACTGGAAGTCCAAAGAGATGAAAGTCCGGCAGAGAGCTGTAGCCCTGTACTTCATCGACAAG___CTTGCTCTGAGAGCAGGCAATGAAAAGGAGGAAGGAGAAACAGC GCGPGAPSDAEVLHLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSRGADKIEGA|rHKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phospholipase C, gamma 1 1 Yes angiosarcoma epithelial oncogene, fusion missense, translocation TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation 12595 PLCG1::TOP1 ENSG00000124181.15::ENSG00000198900.7 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2209 TRUE 856 PLCG1 ENSG00000124181.15 protein_coding + + chr20:41136960-41196801:+ chr20:41137035:+ chr20:39765600-39825441:+ chr20:39765675:+ TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41101209:+ chr20:39657462-39753127:+ chr20:39729849:+ chr20:41153378,chr20:41153384,chr20:41153385 chr20:41100801,chr20:41100801,chr20:41100799 NA NA chr20:39782018,chr20:39782024,chr20:39782025 chr20:39729441,chr20:39729441,chr20:39729439 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |C-terminal_topoisomerase_domain(100%),Eukaryotic_DNA_topoisomerase_I__DNA_binding_fragment(19%),Eukaryotic_DNA_topoisomerase_I__catalytic_core(100%) |Topo_C_assoc(100%),Topoisom_I(100%),Topoisom_I_N(1%) 0 4 0 18 1688 ENST00000244007.7 ENST00000361337.3 downstream upstream duplicates(1),inconsistently_clipped(1) CCCGCCGCCGCCGGTGTGAGGCGGCCCGTCCTGGCTCCCTTGTCCGGGAAGCCCGCCCAG|AGATGCCAAGGTTCCTTCTCCTCCTCCAGGACATAAGTGGAAAGAAGTCCGGCATGATAACAAGGTTACTTGGCTGGTTTCCTGGAaAG...CGAGACTGCTCGGCGGCTGAAAAAATGTGTGGACAAGATCCGGAACCAGTATCGAGAAGACTGGAAGTCCAAAGAGATGAAAGTCCGGCAGAGAGCTGTAGCCCTGTACTTCATCGACAAG___CTTGCTCTGAGAGCAGGCAATGAAAAGGAGGAAGGAGAAACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phospholipase C, gamma 1 1 Yes angiosarcoma epithelial oncogene, fusion missense, translocation TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation 12603 PARD6B::BCAS3 ENSG00000124171.9::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE FALSE TRUE 1254 FALSE NA FALSE NA PARD6B ENSG00000124171.9 protein_coding + + chr20:50731580-50756795:+ chr20:50731852:+ chr20:49348117-49373332:+ chr20:49348389:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61368327:+ chr17:58754814-59470199:+ chr17:59445688:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none PB1_domain(8%)| PB1(0%)| 3 2 4 352 4969 ENST00000371610.7 ENST00000407086.8 downstream upstream mismatches(1) GGAGCTCAGCGCGGACGCCGGAGCTGCGGCCGCCCCCTCTGCAGGTGCCTGTGAGGAGGCGCCCGGGCCGCAACCGCTTTCCGAGATCCCCAGTCGCGCACTCGCTCCCCGCGCTCCTGAGGGGCCGCCCGGCCGGAGGAGGCCGTCGCGGGGCTCGGCGTTCAGCATGAACCGCAGCCACCGGCACGGGGCGGGCAGCGGCTGCCTGGGCACTATGGAGGTGAAGAGCAAG|GTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAG___AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAG MNRSHRHGAGSGCLGTMEVKSK|vpltga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12608 TPD52L2::MARCHF10-DT ENSG00000101150.18::ENSG00000265000.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPD52L2 ENSG00000101150.18 protein_coding + + chr20:63865228-63891545:+ chr20:63869441:+ chr20:62496581-62522898:+ chr20:62500794:+ MARCHF10-DT ENSG00000265000.1 lncRNA + + chr17:62808500-62836371:+ chr17:62831376:+ chr17:60885861-60913732:+ chr17:60908737:+ chr20:63870916,chr20:63871241,chr20:63870917 chr17:62812071,chr17:62812071,chr17:62812064 NA NA chr20:62502269,chr20:62502594,chr20:62502270 chr17:60889432,chr17:60889432,chr17:60889425 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none Tumour_protein_D52_family(18%)| TPD52(0%)| 1 1 2 3358 6 ENST00000611972.4 unknown downstream upstream none CCGCGACAGCGGTCCGGACGCCGCCCGAACATGGACTCCGCCGGCCAAG___ATATCAACCTGAATTCTCCTAACAAAGGTCTGCTGTCTGACTCCATGACGGATGTTCCTGTCGACACAGGTGTGGCTGCCCGGACTCCTGCTGTTGAGGGTCTGACAGAGGCTGAGGAGGAGGAGCTCAGGGCTGAGCTTACCAAG|GTGGAAGTCTTaCTATGTTGCCCAGGCTGGAGTGCAGTGGCATGATCGTAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGGAATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTGCAGGTATGCACTACCCTCTAGGCCAAGGATAAAAACCTTGTGATG MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAARTPAVEGLTEAEEEELRAELTK|vevllccpgwsava* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12612 TDRKH::PRICKLE2 ENSG00000182134.17::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TDRKH ENSG00000182134.17 protein_coding - - chr1:151770107-151791416:- chr1:151774413:- chr1:151742583-151763892:- chr1:151746889:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64332948:- chr3:64077912-64431152:- chr3:64318624:- chr1:151773329,chr1:151773333 chr3:64333380,chr3:64333381 NA NA chr1:151745805,chr1:151745809 chr3:64319056,chr3:64319057 NA NA sense sense unknown 3'UTR/splice-site intron translocation medium none KH_domain(100%),Tudor_domain(100%)|LIM_domain(100%),PET_Domain(100%) KH_1(100%),TUDOR(100%)|LIM(100%),PET(100%) 1 2 0 329 22 ENST00000525790.5 unknown upstream downstream none ATCAG___AAGCTGCTTCCATGTCTGGTGATGATAACCTTGAAGATGACTACTTACTCTGAAGTCTGGGCTTCAGTTTGCTCAGCCATCTGCTTTGCTGT|GTAAAGAGACTGCGACACCGAGGGCTTCTACCTTGAGCAGTGCAACTGATACCCAAATCTTAAATTTTTCCCGTC...TTACACCCAGTAGCCTGGCATGCTTTGTTTCCAGGTGCACAGTTCGACCTGTGCTGATTTCTAAAATGGTCCATAATGTTGTAGAGGGCTCTGGAATTTACTTATTGACATTCTTTTTTAAAAAGAACTCTCTCTGCCTTGGCGTTTTCATTCCATTCCATGTCAAGTTTGTAAAAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12615 HNRNPA2B1::ENSG00000285860 ENSG00000122566.22::ENSG00000285860.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2212 TRUE 857 HNRNPA2B1 ENSG00000122566.22 protein_coding - - chr7:26171151-26201529:- chr7:26185199:- chr7:26210771-26241149:- chr7:26224819:- ENSG00000285860 ENSG00000285860.1 lncRNA - - chr7:26226413-26254709:- chr7:26226657:- chr7:26266033-26294329:- chr7:26266277:- chr7:26182882,chr7:26183010,chr7:26183013 chr7:26242795,chr7:26242795,chr7:26242795 NA NA chr7:26222502,chr7:26222630,chr7:26222633 chr7:26282415,chr7:26282415,chr7:26282415 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| HnRNPA1(100%),RRM_1(100%),bZIP_1(100%),bZIP_Maf(100%)| 1 0 1 146 3 ENST00000677631.1 ENST00000650328.1 upstream downstream none CAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGgGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGgGGAG...CGATACTGAGCTTCTTCCTATTTGCCATGG___GTATCTACTCCTTATCTTCTGTGACTTCCCAGGCCACGGAAAAGGTTCAGAAGTAGATTCTGGTGCAGTTGGCTGTAAGTG|GGTCTTGCTGTGCCACTCAGGCTAGAGTACACTGGTGTGATCTCAGCTCACTGCAGCCTTGACCTCTGGGTTCAAGTGATCCTCCCATCTTGGCCTCCCAATGTGCTGGAATTACAGGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE heterogeneous nuclear ribonucleoprotein A2/B1 1 Yes prostate epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 12616 HNRNPA2B1::ENSG00000285860 ENSG00000122566.22::ENSG00000285860.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2212 TRUE 857 HNRNPA2B1 ENSG00000122566.22 protein_coding - - chr7:26171151-26201529:- chr7:26192495:- chr7:26210771-26241149:- chr7:26232115:- ENSG00000285860 ENSG00000285860.1 lncRNA - - chr7:26226413-26254709:- chr7:26226657:- chr7:26266033-26294329:- chr7:26266277:- chr7:26182882,chr7:26183010,chr7:26183013 chr7:26242795,chr7:26242795,chr7:26242795 NA NA chr7:26222502,chr7:26222630,chr7:26222633 chr7:26282415,chr7:26282415,chr7:26282415 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site duplication low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| HnRNPA1(84%),RRM_1(100%)| 1 0 0 13396 3 ENST00000677339.1 ENST00000650328.1 upstream downstream none GGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG___GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACTGAGCTTCTTCCTATTTGCCATGG|GGTCTTGCTGTGCCACTCAGGCTAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE heterogeneous nuclear ribonucleoprotein A2/B1 1 Yes prostate epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 12627 ENSG00000231128::PTPN22 ENSG00000231128.7::ENSG00000134242.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000231128 ENSG00000231128.7 lncRNA + + chr1:113812379-113870159:+ chr1:113812825:+ chr1:114355001-114412781:+ chr1:114355447:+ PTPN22 ENSG00000134242.16 protein_coding - - chr1:113813811-113871753:- chr1:113833138:- chr1:114356433-114414375:- chr1:114375760:- chr1:113813649,chr1:113813648 chr1:113833462,chr1:113833463 NA NA chr1:114356271,chr1:114356270 chr1:114376084,chr1:114376085 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none none 1 1 1 2 13 ENST00000664434.1 ENST00000538253.5 downstream downstream duplicates(1) CGGCGCGTTCCCATTATCATCTTCCTGTGACCCTTCCTCATTTTACACGGAGGAGGTGGTCTCCACAGTGATTTTAAATTTAATATTTCTCTCATAACCTTTGTGAGATAAAAGAATCTTCATCCTTTTAACTTTGACGAGGGATGAAATGAAG|AGTGTAAAACTCCGAAGTCCTAAATCAG___AACTACATCAAGATCGTTCTTCTCCCCCACCTCCTCTCCCAGAAAGAACTCTAGAGTCCTTCTTTCTTGCCGATGAAGATT___GTATGCAGGCCCAATCTATAGAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12628 ENSG00000183308::NIF3L1 ENSG00000183308.6::ENSG00000196290.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2215 TRUE 858 ENSG00000183308 ENSG00000183308.6 lncRNA + + chr2:200963263-201009102:+ chr2:200964284:+ chr2:201827986-201873825:+ chr2:201829007:+ NIF3L1 ENSG00000196290.17 protein_coding + + chr2:200889327-200903938:+ chr2:200893247:+ chr2:201754050-201768661:+ chr2:201757970:+ chr2:200999745,chr2:200999745 chr2:200892643,chr2:200892640 NA NA chr2:201864468,chr2:201864468 chr2:201757366,chr2:201757363 NA NA sense sense unknown intron CDS duplication low none |NIF3_(NGG1p_interacting_factor_3)(65%) |NIF3(89%) 0 0 3 1 343 unknown ENST00000651500.1 downstream upstream none GGACGTTGCAG?GAGCCGAGATCGAGCCATTGCATTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAG...|...AGCTTGTACCTCCAGGCCCATACATCCTTCCAAAGCTCCCAACTACCCTACAGAGGGAAACCACCGAGTAGAATTCAACGTTAACTACACCCAAGACCTGGACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12629 ENSG00000183308::NIF3L1 ENSG00000183308.6::ENSG00000196290.17 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2215 TRUE 858 ENSG00000183308 ENSG00000183308.6 lncRNA + + chr2:200963263-201009102:+ chr2:200963630:+ chr2:201827986-201873825:+ chr2:201828353:+ NIF3L1 ENSG00000196290.17 protein_coding + + chr2:200889327-200903938:+ chr2:200893246:+ chr2:201754050-201768661:+ chr2:201757969:+ chr2:200999745,chr2:200999745 chr2:200892643,chr2:200892640 NA NA chr2:201864468,chr2:201864468 chr2:201757366,chr2:201757363 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |NIF3_(NGG1p_interacting_factor_3)(65%) |NIF3(89%) 0 0 0 385 343 ENST00000413848.1 ENST00000651500.1 downstream upstream mismatches(1) TGGACGCACCTCACACGCCGCGAGCTAAGCAGAAAAGGGAGGCAGGCTGCCCCGACAaCCCACTACTCACCGCTAGGTTTCCGTCTGGtGCCGAgCCGGCT...CCGCTGAGTCGCCGCCGCAGGGAAGGTcCCTTCaGCCCCAACGGGAAAAGCCAATTTCCAGTAATTCGCGCCCGACCACCGGGGAG|GAGCTTGTACCTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12630 ZMYND8::USP32 ENSG00000101040.20::ENSG00000170832.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47282102:- chr20:45837859-45985633:- chr20:45910846:- USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345608:- chr17:58254688-58499831:- chr17:58422969:- chr20:47278079 chr17:60349845 NA NA chr20:45906823 chr17:58427206 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Bromodomain(100%),PHD-finger(100%),PWWP_domain(50%)|DUSP_domain(100%),EF_hand(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) Bromodomain(100%),PHD(100%),PWWP(1%)|DUSP(100%),EF-hand_5(100%),UCH(100%),Ubiquitin_2(100%),Ubiquitin_3(100%) 3 0 0 156 2021 ENST00000446994.6 ENST00000300896.9 upstream downstream duplicates(1) ATGAAATCGAAGTATGTCCAGAATGTTATCTAGCTGCTTGCCAAAAACGAGATAACTGGTTTTGTGAGCCTTGT___AGCAATCCACATCCTTTGGTCTGGGCCAAACTGAAGGGGTTTCCATTCTGGCCTGCAAAAGCTCTAAGGGATAAAGACGGGCAGGTCGATGCCCGATTCTTTGGACAACATGACAG|TTACAGATGTAGAGCTAAAACGACTGAAGGATGCTTTCAAGAGGACCTG EIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDs|yrcrakttegcfqed NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12642 ANKS1A::BLTP3A ENSG00000064999.16::ENSG00000065060.18 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34889599:+ chr6:34857032-35059183:+ chr6:34857376:+ BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34834217:+ chr6:34759860-34845291:+ chr6:34801994:+ chr6:34915240 chr6:34829944 NA NA chr6:34883017 chr6:34797721 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Ankyrin_repeats_(3_copies)(0%)| Ank_2(0%)| 0 2 0 72 115 ENST00000360359.5 ENST00000192788.6 downstream upstream none GGCGGCGGCGGCGGCGGCCTCGGCTCTTCCAGCCACCCCCTCTCCAGTCTGCTCAG|TGAATATGGCTTTGCCGAAAAGGTGGTGGAAGGGATGTTCATCATTGTCAATTCTATCACCATCAAGATTCACTCCAAGGCCTTCCACGCTTCTTTTGAATTGTGGCAGCTCCAGGGCTATAGTGTCAACCCCAACTGGCAGCAGAGTGACCTTCGCCTTACCC GGGGGGLGSSSHPLSSLLs|EYGFAEKVVEGMFIIVNSITIKIHSKAFHASFELWQLQGYSVNPNWQQSDLRLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12649 TLK2::CA10 ENSG00000146872.19::ENSG00000154975.14 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1255 TRUE 2219 TRUE 859 TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62524331:+ chr17:60536019-60692842:+ chr17:60601692:+ CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51653736:- chr17:49707674-50237377:- chr17:49731097:- chr17:62532633 chr17:51740490 NA NA chr17:60609994 chr17:49817850 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Eukaryotic-type_carbonic_anhydrase(56%) |Carb_anhydrase(6%) 46 10 74 240 160 ENST00000682085.1 ENST00000442502.6 downstream downstream duplicates(13),mismatches(3),multimappers(1) CTTCCAACCAGAGCTTGTGCAGCGTCGGATCCTTGAGTGATAAAGAAGTAGAG___ACTCCCGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG___GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG___TTTGCTGGGGGAAGCGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG|GTGCAGCTCATCCACTATAACCATGAGCTATATACGAATGTCACAGAAGCTGCAAAGAGTCCAAATGGATTGGTGGTAGTTTCTATATTTATAAAA___GTTTCTGATTCATCAAACCCATTTCTTAATCGAATGCTCAACAGAGATACTATCACAAGAATAACATATAAAA___ATGATGCATATT SNQSLCSVGSLSDKEVETPEKKQNDQRNRKRKAEPYETSQGKGTPRGHKISDYFEFAGGSAPGTSPGRSVPPVARSSPQHSLSNPLP|VQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVSDSSNPFLNRMLNRDTITRITYKNDAY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12650 TLK2::CA10 ENSG00000146872.19::ENSG00000154975.14 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1256 TRUE 2219 TRUE 859 TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62523177:+ chr17:60536019-60692842:+ chr17:60600538:+ CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51653736:- chr17:49707674-50237377:- chr17:49731097:- chr17:62532633 chr17:51740490 NA NA chr17:60609994 chr17:49817850 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Eukaryotic-type_carbonic_anhydrase(56%) |Carb_anhydrase(6%) 9 11 37 408 160 ENST00000346027.10 ENST00000442502.6 downstream downstream duplicates(3),mismatches(6),multimappers(2) GCGGCAG___CAGAAATGATGGAAGAATTGCATAGCCTGGACCCACGACGGCAGGAATTATTGGAGGCCAGGTTTACTGGAGTAGGTGTTAGTAAG___GGACCACTTAATAGTGAGTCTTCCAA...GGATCCTTGAGTGATAAAGAAGTAGAG___ACTCCCGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG___GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG|GTGCAGCTCATCCACTATAACCATGAGCTATATACGAATGTCACAGAAGCTGCAAAGAGTCCAAATGGATTGGTGGTAGTTTCTATATTTATAAAA___GTTTCTGATTCATCAAACCCATTTCTTAATCGAATGCTCAACAGAGATACTATCACAAGAATAACATATAAAA___ATGATGCATATTTACTACAGGGGCTTAATATAGAGGAACTATATCCAGAGACCTCTAGTTTCATCACTTACGATGGGTCGATGACTATCCCACC GSLSDKEVETPEKKQNDQRNRKRKAEPYETSQGKGTPRGHKISDYFE|VQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVSDSSNPFLNRMLNRDTITRITYKNDAYLLQGLNIEELYPETSSFITYDGSMTIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12651 TLK2::CA10 ENSG00000146872.19::ENSG00000154975.14 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2219 TRUE 859 TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62524331:+ chr17:60536019-60692842:+ chr17:60601692:+ CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51661846:- chr17:49707674-50237377:- chr17:49739206:- chr17:62532633 chr17:51740490 NA NA chr17:60609994 chr17:49817850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Eukaryotic-type_carbonic_anhydrase(56%) |Carb_anhydrase(9%) 0 1 76 240 2 ENST00000682085.1 ENST00000575097.1 downstream downstream duplicates(10),mismatches(3),multimappers(1) AGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG___GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG___TTTGCTGGGGGAAGCGCGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG|GAAAAAGTCTGCTGACCCCT...TCAGTGTCTGGAACACAGTGGGTGCTCCCCAATAGGTGACACCTTCCTCAAGTTTCCTTGGGAGAACAGACTCAATGTCGGATCCACAAAGGAGACCTGCACATACCTAACCCCTATTTCTGCAGAAGCTGAAGGCTGT RNRKRKAEPYETSQGKGTPRGHKISDYFEFAGGSAPGTSPGRSVPPVARSSPQHSLSNPLP|ekvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12652 NELL2::SCFD2 ENSG00000184613.11::ENSG00000184178.17 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NELL2 ENSG00000184613.11 protein_coding - - chr12:44508275-44921848:- chr12:44703726:- chr12:44902058-45315631:- chr12:45097509:- SCFD2 ENSG00000184178.17 protein_coding - + chr4:52872982-53366066:- chr4:53116878:+ chr4:53739149-54232233:- chr4:53983045:+ chr12:44667442 chr4:53096733 NA NA chr12:45061225 chr4:53962900 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Calcium-binding_EGF_domain(0%),Laminin_G_domain(100%),von_Willebrand_factor_type_C_domain(52%)| EGF_CA(0%),Laminin_G_1(100%),Laminin_G_2(100%),VWC(49%)| 9 24 34 3127 62 ENST00000333837.8 unknown upstream upstream duplicates(16) CTTGTTGAGAGTTCAGGCTGTCCAGCTTTGGATTGTCCAGAGTCTCATCAGATAACCTTGTCTCACAGCTGTTGCAAAGTTTGTAAAG___GTTATGACTTTTGTTCTGAAAGGCATAACTGCATGGAGAATTCCATCTGCAGAAATCTGAATGACAGGGCTGTTTGTAGCTGTCGAGATGGTTTTAGGGCTCTTCGAGAGGATAATGCCTACTGTGAAG|GTCTTAAAGCAACCACAGAGCCTCTAAGTACCATCAaCTTGTCACAGATATCCTGGAATTCCATATGCAATGAAAGTTGAAGAAGCTGATGAAGAAAGAAAACCAAAGATGCAAGATTTCTAACTAGACCTAGACAAAACTTCTGCATCTTATCTAACAGATCCTGAGAAATAGACTCAGAAGAGGAGTGCTTCTCATTTTCTACAGGAGGAGAGTAGCACTCTGTGTACTGGAACTGAAACCATGGAAACTTGAGGGAATTCCAGACCACGCTGACTCCTATCAAGCTGCTGTGCCCCACCCCAGGAGAGCTGAACACAGGAGTAGCACAAGAG LVESSGCPALDCPESHQITLSHSCCKVCKGYDFCSERHNCMENSICRNLNDRAVCSCRDGFRALREDNAYCE|glkatteplstinlsqiswnsicnes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12657 ATP10D::ENSG00000286328 ENSG00000145246.14::ENSG00000286328.1 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1258 FALSE NA FALSE NA ATP10D ENSG00000145246.14 protein_coding + + chr4:47485275-47593486:+ chr4:47485519:+ chr4:47487292-47595503:+ chr4:47487536:+ ENSG00000286328 ENSG00000286328.1 lncRNA + + chr18:41341319-41507550:+ chr18:41504134:+ chr18:38921283-39087514:+ chr18:39084098:+ chr4:47491047,chr4:47491047 chr18:41494113,chr18:41494110 NA NA chr4:47493064,chr4:47493064 chr18:39074077,chr18:39074074 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 18 7 28 97 45 ENST00000273859.8 ENST00000670702.1 downstream upstream duplicates(13),mismatches(6) AGCGGAGGGAGAAGTAGGTTGCGAGCTCAGCACAGGCTCCGGCGCTGGCTCCCGCAGCTGAGTTTGGGAGATGTCTAAGTGATTTTTTTTTTTTCCCGGAAGGCAAATGGCTGGCGTGGAAGCACAACCCGCTTTCACTCTTCGAATTTGTGCTTAGCTCTTTTCTTGTACCTTGCGACTCGTGACCAACATGCTGTGATGTGTGCCGAGGGAGGAATTG|AGAGATGACTCATGGCCCAGGTGAAATTCAGGTCCAAGCTCTGGAGAGTGTGTGGGGACTGGTGAAAAGACATG___GTTTTATTGTTATCTGTTTAGTTCCTGCTGCGGAAGATGAGACTCTCGCTCTCTTTGTCATTTCCCCACATGCACAGAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12659 MTX2::MFSD4B ENSG00000128654.14::ENSG00000173214.7 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1259 TRUE 2221 TRUE 860 MTX2 ENSG00000128654.14 protein_coding + + chr2:176269395-176338025:+ chr2:176269669:+ chr2:177134123-177202753:+ chr2:177134397:+ MFSD4B ENSG00000173214.7 protein_coding + + chr6:111259327-111445354:+ chr6:111262257:+ chr6:111580530-111766557:+ chr6:111583460:+ chr2:176285214,chr2:176285801,chr2:176285212 chr6:111261320,chr6:111260843,chr6:111261315 NA NA chr2:177149942,chr2:177150529,chr2:177149940 chr6:111582523,chr6:111582046,chr6:111582518 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Outer_mitochondrial_membrane_transport_complex_protein(1%)|Major_Facilitator_Superfamily(98%) GST_N_4(0%),Tom37(0%)|DNA_pol_B(100%),DNA_pol_B_exo1(100%),DUF4683(100%),MFS_1(63%),zf-C4pol(100%) 10 5 16 987 98 ENST00000420864.5 ENST00000671876.2 downstream upstream duplicates(2) GCGGTAACCTTGGGGGCCTCACTGCAGCCGCCGCTGCTGTTGGAGTGGGCTTTGCGAGTCTGAACGTTGGCGGGGCTAGGCTCGTTAACTGCCGAGAGCCTCCGGGTTTGCGGTGGAGGACGCTGAGGCCCGTGGGGGGCAGGCACCCGGGCGCCGGGCCTCCCAGCCGACATGTCTCTAGTGGCGGAAGCCTTCGTCTCCCAGATTGCAG|GGATTGAGTGTTGCTATAGTGGGACCCACGTTTCAAGATTTGGCAACAAACGTGAACCGAAATATCAGTAGTCTGTCTTTCATTTTTGTGGGTCGTGCCTTGGGATATTTGAGTGGCTCTGTGATTGGTGGATTTCTTGTCGATGTCATGAATTATTTTTTACTTTTGG___GAATCTCAATGTCGG MSLVAEAFVSQIA|gieccysgthvsrfgnkrepkyq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12660 MTX2::MFSD4B ENSG00000128654.14::ENSG00000173214.7 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2221 TRUE 860 MTX2 ENSG00000128654.14 protein_coding + + chr2:176269395-176338025:+ chr2:176270419:+ chr2:177134123-177202753:+ chr2:177135147:+ MFSD4B ENSG00000173214.7 protein_coding + + chr6:111259327-111445354:+ chr6:111262257:+ chr6:111580530-111766557:+ chr6:111583460:+ chr2:176285214,chr2:176285801,chr2:176285212 chr6:111261320,chr6:111260843,chr6:111261315 NA NA chr2:177149942,chr2:177150529,chr2:177149940 chr6:111582523,chr6:111582046,chr6:111582518 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site translocation high none Outer_mitochondrial_membrane_transport_complex_protein(1%)|Major_Facilitator_Superfamily(98%) GST_N_4(1%),Tom37(1%)|DNA_pol_B(100%),DNA_pol_B_exo1(100%),DUF4683(100%),MFS_1(63%),zf-C4pol(100%) 2 1 16 70 98 ENST00000420864.5 ENST00000671876.2 downstream upstream duplicates(1),mismatches(1) GCCGCCGCTGCTGTTGGAGTGGGCTTTGCGAGTCTGAACGTTGGCGGGGCTAGGCTCGTTAACTGCCGAGAGCCTCCGGGTTTGCGGTGGAGGACGCTGAG...CTcGGtTCACTGCAAgCTCCaCcTtCCGGGTTCAcGCcATTCTCCTGCCTTAGCCTCCCGAGTAGTTGGGATTACAGGCGCCCGCCACCACGCCCGCGCGGATTCATGGAAAATTTTTAAATCTGCATGTACTTTAAAGAAATACTTTTGAGTCGGTGGACTGAACATGACTGATGTATATAG|GGATTGAGTGTTGCTATAGTGGGACCCACGTTTCAAGATTTGGCAACAAACGTGAACCGAAATATCAGTAGTCTGTCTTTCATTTTTGTGGGTCGTGCCTTGGGATATTTGAGTGGCTCTGTGATTGGTGGATTTCTTGTCGATGTCATGAATTATTTTTTACTTTTGG___GAATCTCAATGTCGGCTACCACCGTTGGTCTTTATCTTGTTCCTTTTTGCAAGACAGCAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12664 ATOSA::CYP19A1 ENSG00000047346.13::ENSG00000137869.16 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52678006:- chr15:52873514-53002014:- chr15:52970203:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51242950:- chr15:51500254-51630798:- chr15:51535147:- chr15:52642422,chr15:52642422,chr15:52642426 chr15:51310370,chr15:51310369,chr15:51310355 NA NA chr15:52934619,chr15:52934619,chr15:52934623 chr15:51602567,chr15:51602566,chr15:51602552 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Cytochrome_P450(100%) |p450(100%) 4 3 6 30 56 ENST00000534964.6 ENST00000396402.6 upstream downstream duplicates(1),mismatches(1) GGGC?CGGG?GGCGCAGGGG?CTGGAAGAG?T?GC?GCGCCCAGGCACCAGGTGG?AGAATTTCCATA?CAGCCCTGCGGAGGTGCCTCTGTTTCCAGAGGCGTTTTTGTACGAAGGG___CATTTTGAAAGCGAAGCAGAAGCCGTAGAATCAGCGGCGAGCCTGTTGAAAGAACCCACAGGTGCATTTCACAGCACTCTGGGCGAAAATTGGATGTGAAAATGAAGCCAGACCGAG|GACTCTAAATTGCCCCCTCTGAGGTCAAGGAACACAAGATGGTTTTGGAAATGCTGAACCCGATACATTATAACATCACCAGCATCGTGCCTGAAGCCATGCCTGCTGCCACCATGCCAGTCCTGCTCCTCACTGGCCTTTTTCTCTTGGTGTGGAATTATGAG MKPDR|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12668 WDPCP::GFPT1 ENSG00000143951.16::ENSG00000198380.13 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2223 TRUE 861 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63650659:- chr2:63346694-64054977:- chr2:63877793:- GFPT1 ENSG00000198380.13 protein_coding - - chr2:69319780-69387250:- chr2:69374113:- chr2:69546912-69614382:- chr2:69601245:- chr2:63640914,chr2:63640918 chr2:69378646,chr2:69378647 NA NA chr2:63868048,chr2:63868052 chr2:69605778,chr2:69605779 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Glutamine_amidotransferase_domain(100%),SIS_domain(100%) |GATase_4(100%),GATase_6(100%),GATase_7(100%),SIS(100%) 0 1 0 2 416 ENST00000490935.5 ENST00000361060.5 upstream downstream none CCTCCAGGAAACTTCAGATTGCCCAAGGATCACTATAAGAA|GTATATTTGCTTACTTAAACTACCATGTTCCTCGAACGAGACGAGAAATCCTGGAGACCC...AAGGCCTTCAGAGACTGGAGTACAGAGGATATGATTCTGCTG___GTGTGGGATTTGATGGAGGCAATGATAAAGATTGGGAAGCCAATGCCTGCAAAATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12669 WDPCP::GFPT1 ENSG00000143951.16::ENSG00000198380.13 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2223 TRUE 861 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63711497:- chr2:63346694-64054977:- chr2:63938631:- GFPT1 ENSG00000198380.13 protein_coding - - chr2:69319780-69387250:- chr2:69374113:- chr2:69546912-69614382:- chr2:69601245:- chr2:63640914,chr2:63640918 chr2:69378646,chr2:69378647 NA NA chr2:63868048,chr2:63868052 chr2:69605778,chr2:69605779 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Glutamine_amidotransferase_domain(100%),SIS_domain(100%) |GATase_4(100%),GATase_6(100%),GATase_7(100%),SIS(100%) 0 1 0 4 416 ENST00000490935.5 ENST00000361060.5 upstream downstream none CTCACTATGTTGTCCAGGCTGACCTGGAACTCCTGGGCTGAAGCGATCCTCCAACCTTGGCCTCTCAAAGTTCTGGGATTATAG|GTATATTTGCTTACTTA...ACGAGACGAGAAATCCTGGAGACCCTAATCAAAGGCCTTCAGAGACTGGAGTACAGAGGATATGATTCTGCTG___GTGTGGGATTTGATGGAGGCAATGATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12671 TEN1-CDK3::UNK ENSG00000261408.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2224 TRUE 862 TEN1-CDK3 ENSG00000261408.7 protein_coding + + chr17:75979231-76005999:+ chr17:75986284:+ chr17:73975312-74002080:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75809760:+ chr17:73780887-73821880:+ chr17:73805841:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Unkempt_Zinc_finger_domain_1_(Znf1)(95%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(0%) 2 2 3 238 252 ENST00000649294.1 ENST00000589666.6 downstream upstream mismatches(1) CAAGAAACTGCCCTGCTGGGCGTCCGGGGAGTGGGAAAATAAAGCACTTTTTGTATCCCGCCCCTCCCCCGTCACGTGACCACGCGAGGCGGAAAGAAGAAATCCGAGGACCGGCGACGCCTAGAACAG___GAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GTACCTGAAAGAATTCCGCACAGAGCAGTGCCCACTCTTTGTGCAACACAAATGCACGCAGCATCGGCCCTACACCTGCTTCCACTGGCACTTCGTGAACCAGCGGCGCCGCCGGTCCATCCGCCGTCGGGACGGCACCTTCAATTACAGCCCTGACGTCTACTGCACCAAGT...GGACACTGAGCGCAGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCGAAAGGCAACTGCACCAAAAACGGCCTGCACTGCGCTTTTGCCCACGGGCCCCATGACCTCCGCTCCCCT MMLPKPGTYYLPWEVSAGQVPDGSTLRTFGr|YLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12672 TEN1-CDK3::UNK ENSG00000261408.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2224 TRUE 862 TEN1-CDK3 ENSG00000261408.7 protein_coding + + chr17:75979231-76005999:+ chr17:75986284:+ chr17:73975312-74002080:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75808948:+ chr17:73780887-73821880:+ chr17:73805029:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Unkempt_Zinc_finger_domain_1_(Znf1)(95%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(3%) 3 0 3 238 35 ENST00000649294.1 ENST00000592629.1 downstream upstream duplicates(1),mismatches(1) CTCCTGGCCAGGGGAGGCTCCCGAGCGGATCCTCGGGAAAGGGGCTCCGAAGGTCAAGAAACTGCCCTGCTGGGCGTCCGGGGAGTGGGAAAATAAAGCACTTTTTGTATCCCGCCCCTCCCCCGTCACGTGACCACGCGAGGCGGAAAGAAGAAATCCGAGGACCGGCGACGCCTAGAACAG___GAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GGCAGAGGAGAGAGACCAGTGAAGGTTGGGAGGAGGCGGCCAAAAGGAGACAGCTTCATGCCCCCAGGACATAAATAaCCCGG MMLPKPGTYYLPWEVSAGQVPDGSTLRTFGr|AEERDQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12673 TEN1-CDK3::UNK ENSG00000261408.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2224 TRUE 862 TEN1-CDK3 ENSG00000261408.7 protein_coding + + chr17:75979231-76005999:+ chr17:75986284:+ chr17:73975312-74002080:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75812112:+ chr17:73780887-73821880:+ chr17:73808193:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(5%) 1 0 1 238 205 ENST00000649294.1 ENST00000589666.6 downstream upstream mismatches(1) GGAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GTGCCCATTCCTGCACAGAACCACAGGGGACACTGAGCGCAGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCGAAAGGCAACTGCA MMLPKPGTYYLPWEVSAGQVPDGSTLRTFGr|CPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12674 TEN1::UNK ENSG00000257949.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2225 TRUE 863 TEN1 ENSG00000257949.7 protein_coding + + chr17:75979240-76000586:+ chr17:75986284:+ chr17:73975321-73996667:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75809760:+ chr17:73780887-73821880:+ chr17:73805841:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Telomere-capping__CST_complex_subunit(24%)|Unkempt_Zinc_finger_domain_1_(Znf1)(95%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(0%) 2 2 3 238 252 ENST00000397640.6 ENST00000589666.6 downstream upstream mismatches(1) CAAGAAACTGCCCTGCTGGGCGTCCGGGGAGTGGGAAAATAAAGCACTTTTTGTATCCCGCCCCTCCCCCGTCACGTGACCACGCGAGGCGGAAAGAAGAAATCCGAGGACCGGCGACGCCTAGAACAG___GAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GTACCTGAAAGAATTCCGCACAGAGCAGTGCCCACTCTTTGTGCAACACAAATGCACGCAGCATCGGCCCTACACCTGCTTCCACTGGCACTTCGTGAACCAGCGGCGCCGCCGGTCCATCCGCCGTCGGGACGGCACCTTCAATTACAGCCCTGACGTCTACTGCACCAAGT...GGACACTGAGCGCAGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCGAAAGGCAACTGCACCAAAAACGGCCTGCACTGCGCTTTTGCCCACGGGCCCCATGACCTCCGCTCCCCT MMLPKPGTYYLPWEVSAGQVPDGSTLRTFGr|YLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12675 TEN1::UNK ENSG00000257949.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2225 TRUE 863 TEN1 ENSG00000257949.7 protein_coding + + chr17:75979240-76000586:+ chr17:75986284:+ chr17:73975321-73996667:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75808948:+ chr17:73780887-73821880:+ chr17:73805029:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Telomere-capping__CST_complex_subunit(24%)|Unkempt_Zinc_finger_domain_1_(Znf1)(95%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(100%),zf_CCCH_5(3%) 3 0 3 238 35 ENST00000397640.6 ENST00000592629.1 downstream upstream duplicates(1),mismatches(1) CTCCTGGCCAGGGGAGGCTCCCGAGCGGATCCTCGGGAAAGGGGCTCCGAAGGTCAAGAAACTGCCCTGCTGGGCGTCCGGGGAGTGGGAAAATAAAGCACTTTTTGTATCCCGCCCCTCCCCCGTCACGTGACCACGCGAGGCGGAAAGAAGAAATCCGAGGACCGGCGACGCCTAGAACAG___GAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GGCAGAGGAGAGAGACCAGTGAAGGTTGGGAGGAGGCGGCCAAAAGGAGACAGCTTCATGCCCCCAGGACATAAATAaCCCGG MMLPKPGTYYLPWEVSAGQVPDGSTLRTFGr|AEERDQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12676 TEN1::UNK ENSG00000257949.7::ENSG00000132478.10 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2225 TRUE 863 TEN1 ENSG00000257949.7 protein_coding + + chr17:75979240-76000586:+ chr17:75986284:+ chr17:73975321-73996667:+ chr17:73982365:+ UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75812112:+ chr17:73780887-73821880:+ chr17:73808193:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none Telomere-capping__CST_complex_subunit(24%)|Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) Ten1_2(0%)|zf-CCCH(100%),zf-CCCH_2(5%) 1 0 1 238 205 ENST00000585710.1 ENST00000589666.6 downstream upstream mismatches(1) GGAGCCCATGATGCTGCCCAAACCTGGGACCTATTACCTCCCCTGGGAGGTTAGTGCAGGCCAAGTTCCTGATGGGAGCACGCTGAGAACATTTGGCAG|GTGCCCATTCCTGCACAGAACCACAGGGGACACTGAGCGCAGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCGAAAGGCAACTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12681 EFNA5::FBXL17 ENSG00000184349.14::ENSG00000145743.18 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EFNA5 ENSG00000184349.14 protein_coding - - chr5:107376894-107670937:- chr5:107670489:- chr5:106712595-107006638:- chr5:107006190:- FBXL17 ENSG00000145743.18 protein_coding - - chr5:107859035-108382098:- chr5:108021001:- chr5:107194736-107717799:- chr5:107356702:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ephrin(10%)|Leucine_Rich_repeat(100%) Ephrin(0%)|LRR_6(100%) 0 1 3 38 75 ENST00000333274.11 ENST00000542267.7 upstream downstream none CTCCCTCCGGATCCCCGCTCTCTCCCCGGAGTGGCGCGTCGGGGGCTtCGCCGCTGGCCAGGaGTGATGTTGCACGTGGAGAaGTTGACGCTGGTGTTTCTGGTGCTCTGGATGTGTGTGTTCAGCCAGGACCCGGGCTCCAAGGCCGTCGCCGACCGCTACGCTGTCTACTGGAACAGCAGCAACCCCAG|GTGTGTGGAGGcCATTGCAAAGGAAGGACAAAACCTGAAAGAG...ATGGTGTAAAGAAATCACAGACCAAGGAGCCACCCTGATTGCACAGAGCAGCAAGTCTCTGAGATATTTGGGGCTGATGAGATGTGATAAA___GTCAACGAAG MLHVEkLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPr|CVEaIAKEGQNLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12682 PHIP::BCKDHB ENSG00000146247.15::ENSG00000083123.15 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHIP ENSG00000146247.15 protein_coding - + chr6:78934419-79078287:- chr6:79014519:+ chr6:79644136-79788004:- chr6:79724236:+ BCKDHB ENSG00000083123.15 protein_coding + + chr6:80106647-80346270:+ chr6:80273135:+ chr6:80816364-81055987:+ chr6:80982852:+ chr6:79064264,chr6:79064264 chr6:80226339,chr6:80226336 NA NA chr6:79773981,chr6:79773981 chr6:80936056,chr6:80936053 NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' high none |Transketolase__C-terminal_domain(52%) |Transketolase_C(49%) 0 1 2 1 125 unknown ENST00000320393.9 downstream upstream duplicates(1) CTTAATACTTCATACAGTAAATAGAAACACTGCTCG|TCTGTGATCAAAACAGGGCGACTGCTAATCAGTCACGAGGCTCCCTTGACAGGCGGCTTTGCATC...GCTCTACAGTTCAG___GAGGAATGTTTCTTGAACCTAGAGGCTCCTATATCAAGAGTATGTGGTTATGACACACCATTTCCTCACATTTTTGAACCATTCTAC...GTGCCCCTGACATTAACGTACTGTTAACCAAGACACAGCAATCATCAGTGTTTTGATGGTAACAAACTTTGATGGTAAAGTTGaTAAAAGGCAACTTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12703 RAD51C::PPM1E ENSG00000108384.16::ENSG00000175175.6 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1261 FALSE NA FALSE NA RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58695189:+ chr17:56769934-56812972:+ chr17:56772550:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58969539:+ chr17:56833215-57062540:+ chr17:57046900:+ chr17:58696605 chr17:58967339 NA NA chr17:56773966 chr17:57044700 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Rad51(18%)|Protein_phosphatase_2C(88%) AAA_25(0%),HHH_5(100%),Rad51(0%)|PP2C(74%) 1 3 5 497 61 ENST00000337432.9 ENST00000308249.4 downstream upstream duplicates(4),mismappers(1) GATATCTAAAGCAGAAGCCTTAGAAACTCTGCAAATTATCAGAAGAGAATGTCTCACAAATAAACCAAGATATGCTGGTACATCTGAGTCACACAAGAAGTGTACAGCACTGGAACTTCTTGAGCAGGAGCATACCCAGGGCTTCATAATCACCTTCTGTTCAGCACTAGATGATATTCTTGGGGGTGGAGTGCCCTTAATGAAAACAACAGAAATTTGTGGTGCACCAGGTGTTGGAAAAACACAATTATG|GACCAGGAAGAACAAGCTTACTTTGCAGTGTTTGATGGCCATGGGGGAGTAGATGCTGCTATTTATGCCTCCATTCACCTCCACGTTAACTTAGTCCGCCAGGAGATGTTCCCCCATGATCCTGCTGAGGCCCTGTGCAGGGCCTTCCGGGTCACTGATGAGCGGTTTGTGCAGAAAGCAGCCAGGGAG___AGCTTAAGATGTGGGACCACAGGAGTGGTGACTTTCATCAGAGGCAAC ISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLw|trknkltlqclmamge* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 12732 DPP6::FLACC1 ENSG00000130226.18::ENSG00000155749.13 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DPP6 ENSG00000130226.18 protein_coding + + chr7:153748133-154894285:+ chr7:153749008:+ chr7:153445218-154685995:+ chr7:153446093:+ FLACC1 ENSG00000155749.13 protein_coding - - chr2:201288271-201357398:- chr2:201348302:- chr2:202152994-202222121:- chr2:202213025:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none none none 0 2 0 190 17 ENST00000706130.1 ENST00000392257.8 downstream downstream duplicates(1) CTCAACTTCCTCTGGACATGAATCAAACCGCAGGAGTCTCCAATAGCGTCAGGTGTCCCCCGGGGAAAGGCCACAAG|AATGAAAATCCATTCAGCAAGGCAAGAAGAGACTAATAAATCATTTTAT___GAAGT...GAATCGGGAACAGATTTCTGTCACCTTAGGGGATGAGATGTTTGATAGGAAAAAGCGGTGGGAATCGGAGATCCCGGACAAAGGCAGATTTTCCAG___GACCAACATCATTTCTGACCTAGAAGAGCAAATCTCAG MNQTAGVSNSVRCPPGKGHK|nenpfskarrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12738 TENM4::NRG1 ENSG00000149256.16::ENSG00000157168.22 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1263 TRUE 2239 TRUE 864 TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78854104:- chr11:78363874-79152074:- chr11:78565149:- NRG1 ENSG00000157168.22 protein_coding + + chr8:31639222-32855666:+ chr8:32595828:+ chr8:31496738-32713184:+ chr8:32453346:+ chr11:78759594,chr11:78759594,chr11:78759594,chr11:78759594,chr11:78759594 chr8:32593795,chr8:32593796,chr8:32593791,chr8:32593777,chr8:32593742 NA NA chr11:78470639,chr11:78470639,chr11:78470639,chr11:78470639,chr11:78470639 chr8:32451313,chr8:32451314,chr8:32451309,chr8:32451295,chr8:32451260 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman Teneurin_Intracellular_Region(100%)|EGF-like_domain(100%),Immunoglobulin_I-set_domain(100%),Neuregulin_intracellular_region(100%) Ten_N(100%)|EGF(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Neuregulin(100%),V-set(100%),hEGF(100%),ig(100%) 41 34 43 273 158 ENST00000278550.12 ENST00000652698.1 upstream upstream duplicates(12),mismatches(7),multimappers(1) CTGGTTGGCATTTATGGCAGAAAAGGCCTCCCTCCTTCACATACACAG___TTTGACTTTGTGGAGCTGCTGGATGGCAGGAGGCTCCTAACCCAGGAGGCGCGGAGCCTAGAGGGGACCCCGCGCCAGTCTCGGGGAACTGTGCCCCCCTCCAGCCATGAGACAGGCTTCATCCAGTATTTGGATTCAGGAATCTGGCACTTGGCTTTTTACAATGACGGAAAGGAGTCAGAAGTGGTTTCCTTTCTCACCACTGCCATTG|CCTTGCCTCCCCGATTGAAAGAGATGAAAAGCCAGGAATCGGCTGCAGGTTCCAAACTAGTCCTTCGGTGTGAAACCAGTTCTGAATACTCCTCTCTCAGATTCAAGTGGTTCAAGAATGGGAATGAATTGAATCGAAAAAACAAACCACAAAATATCAAGATACAAAAAAAGCCAGG___GAAGTCAGAACTTCGCATTAACAAAGCATCACTG LVGIYGRKGLPPSHTQFDFVELLDGRRLLTQEARSLEGTPRQSRGTVPPSSHETGFIQYLDSGIWHLAFYNDGKESEVVSFLTTAI|aLPPRLKEMKSQESAAGSKLVLRCETSSEYSSLRFKWFKNGNELNRKNKPQNIKIQKKPGKSELRINKAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-708,hsa-mir-5579 chr11:79402022-79402109:-,chr11:79422169-79422226:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neuregulin 1 1 NSCLC epithelial TSG, fusion translocation 12739 TENM4::NRG1 ENSG00000149256.16::ENSG00000157168.22 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2239 TRUE 864 TENM4 ENSG00000149256.16 protein_coding - + chr11:78652829-79441030:- chr11:78795418:+ chr11:78363874-79152074:- chr11:78506463:+ NRG1 ENSG00000157168.22 protein_coding + + chr8:31639222-32855666:+ chr8:32595828:+ chr8:31496738-32713184:+ chr8:32453346:+ chr11:78802908,chr11:78802891,chr11:78802935,chr11:78802946,chr11:78802914,chr11:78802950,chr11:78802957 chr8:32593827,chr8:32593827,chr8:32593827,chr8:32593827,chr8:32593827,chr8:32593827,chr8:32593827 NA NA chr11:78513953,chr11:78513936,chr11:78513980,chr11:78513991,chr11:78513959,chr11:78513995,chr11:78514002 chr8:32451345,chr8:32451345,chr8:32451345,chr8:32451345,chr8:32451345,chr8:32451345,chr8:32451345 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none |EGF-like_domain(100%),Immunoglobulin_I-set_domain(100%),Neuregulin_intracellular_region(100%) |EGF(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Neuregulin(100%),V-set(100%),hEGF(100%),ig(100%) 2 5 1 9 158 unknown ENST00000651335.1 downstream upstream mismappers(1) GATTCCAGTGGTACAGGACAGAGTGCTCACGTAACTGTTCAAGATTCTGTGATTTTTCAGAGAAGAGGCTTGGAATCAG|CCTTGCCTCCCCGATTGAAAGAGATGAAAAGCCAGGAATCGGCTGCAGGTTCCAAACTAGTCCTTCGGTGTGAAACCAGTTCTGAATACTCCTCTCTCAGATTCAAGTGGTTCAAGAATGGGAATGAATTGAATCGAAAAAACAAACCACAAAATATCAAGATACAAAAAAAGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neuregulin 1 1 NSCLC epithelial TSG, fusion translocation 12740 TPCN2::RSF1 ENSG00000162341.18::ENSG00000048649.14 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2240 TRUE 865 TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69057694:+ chr11:68816400-68903784:+ chr11:68825162:+ RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77740936:- chr11:77371054-77531915:- chr11:77451981:- chr11:69059708,chr11:69059700 chr11:77743486,chr11:77743494 NA NA chr11:68827176,chr11:68827168 chr11:77454531,chr11:77454539 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Ion_transport_protein(18%)|PHD-finger(100%),WSTF__HB1__Itc1p__MBD9_motif_1(39%) Ion_trans(10%)|PHD(100%),WHIM1(0%) 6 36 22 524 239 ENST00000535009.5 ENST00000308488.11 downstream downstream duplicates(4),mismatches(3) CATCGAAGATGCTATTCAG___GGTTACCTGTTCGGGTGGGCCCATTTCCAGAAAAACCTTTGGCTGCTGGGCTACCTCGTGGTGCTGGTGGTGTCTCTGGTGGACTGGACCGTGTCCCTGAGTCTCGTGTGTCATGAG|TACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAG___AAATCGAAACGAGTTGGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12741 TPCN2::RSF1 ENSG00000162341.18::ENSG00000048649.14 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2240 TRUE 865 TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69057694:+ chr11:68816400-68903784:+ chr11:68825162:+ RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77725699:- chr11:77371054-77531915:- chr11:77436744:- chr11:69059708,chr11:69059700 chr11:77743486,chr11:77743494 NA NA chr11:68827176,chr11:68827168 chr11:77454531,chr11:77454539 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Ion_transport_protein(18%)|PHD-finger(100%) Ion_trans(10%)|PHD(100%) 3 0 6 524 193 ENST00000535009.5 ENST00000308488.11 downstream downstream duplicates(1),mismatches(1) CTTACCGCAGCATCCAAGTCGGCCCTG___GTGCCGCGGCCAGGTGGGACCTCTGCATTGATCAGGCTGTGGTCTTCATCGAAGATGCTATTCAG___GGTTACCTGTTCGGGTGGGCCCATTTCCAGAAAAACCTTTGGCTGCTGGGCTACCTCGTGGTGCTGGTGGTGTCTCTGGTGGACTGGACCGTGTCCCTGAGTCTCGTGTGTCATGAG|AAATCGAAACGAGTTGGCTGAGACTCTTGCACTCCTGAAAGCACAAATTGATCCTGTACTATTGAAAAACTCTAGCCAACAAGACAACTCTTCTCGGGAAAGTCCCAGCTTAGAGGATGAGGAGACTAAAAAAGAGGAAGAAACACCTAAACAAG___AGGAACAGAAAGAAAGTGAAAAGATGAAAAGTGAGGAGCAGCCTATGGATTTAGAAAACCGTTCTACAGCCAATGTTCTAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12742 TPCN2::RSF1 ENSG00000162341.18::ENSG00000048649.14 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2240 TRUE 865 TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69057694:+ chr11:68816400-68903784:+ chr11:68825162:+ RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77698693:- chr11:77371054-77531915:- chr11:77409738:- chr11:69059708,chr11:69059700 chr11:77743486,chr11:77743494 NA NA chr11:68827176,chr11:68827168 chr11:77454531,chr11:77454539 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Ion_transport_protein(18%)|PHD-finger(100%) Ion_trans(10%)|PHD(100%) 0 1 0 524 276 ENST00000637504.1 ENST00000308488.11 downstream downstream none TGGACCGTGTCCCTGAGTCTCGTGTGTCATGAG|GTAAAACCCAAAGGCAAAGTTCGATGGACTGGTTCTCGGACACGTGGCAGATGGAAATATTCCAGCAA...ATCTGCAGCTTCAGAAGAGGAGGAAGAAAAGGAAAGTGAAGAAGCCATCCTAGCAGATGATGATGAACCATGCAAAAAATGTGGCCTTCCAAACCATCC WTVSLSLVCHE|VKPKGKVRWTGSRTRGRWKYSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12758 TRNT1::CNTN4 ENSG00000072756.18::ENSG00000144619.15 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1267 TRUE 2245 TRUE 866 TRNT1 ENSG00000072756.18 protein_coding + + chr3:3126933-3153435:+ chr3:3140648:+ chr3:3168617-3195119:+ chr3:3182332:+ CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2819486:+ chr3:2140497-3099643:+ chr3:2861170:+ chr3:3141074 chr3:2802667 NA NA chr3:3182758 chr3:2844351 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Poly_A_polymerase_head_domain(82%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(77%),Immunoglobulin_domain(100%) PolyA_pol(45%)|I-set(92%),Ig_2(83%),Ig_3(89%),fn3(100%),ig(92%) 2 5 1 95 11 ENST00000698408.1 ENST00000418658.6 downstream upstream none ATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTATTAAATGGAGTAAAGCCTCAGGATATAGATTTTGCCACCACTGCTACCCCTACTCAAATGAAGGAGA...GAACAATTACTGCCAGG___CTTCATGAAGAAAATTTTGAGATTACTACACTACGGATTGATGTCACCACTGATGGAAGACATGCTGAGGTAGAATTTACAACTGACTGGCAGAAAGATGCGGAACGCAGAGATCTCACTATAAATTCTATGTTTTTAG|ATCTTGACAACTTTAAAACAAGAACAAGAAGCACTGTGTCTGTCCGTCGAGGTCAAGGAATGGTGCTACTGTGTGGCCCGCCACCCCATTCTGGAG___AGCTGAGTTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAATCGCCGCTTTGTTTCTCAAGAGACcGG...AGTTTGCACTATTGACAACATACTTTATAGCAAAGTTAGCTAGACT___GTTCAGTCTCTTTTTCCTCTGACTATGGGAAGCCTAAAGGAGAGATGAAATGGAG TITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFL|dLDNFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12759 TRNT1::CNTN4 ENSG00000072756.18::ENSG00000144619.15 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2245 TRUE 866 TRNT1 ENSG00000072756.18 protein_coding + + chr3:3126933-3153435:+ chr3:3129188:+ chr3:3168617-3195119:+ chr3:3170872:+ CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2819486:+ chr3:2140497-3099643:+ chr3:2861170:+ chr3:3141074 chr3:2802667 NA NA chr3:3182758 chr3:2844351 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(77%),Immunoglobulin_domain(100%) |I-set(92%),Ig_2(83%),Ig_3(89%),fn3(100%),ig(92%) 3 1 0 204 11 ENST00000698408.1 ENST00000418658.6 downstream upstream none CCG___ATGTGTAGTTGGTGACTGCCTCTCCAGATGCTGAGGTGCCTGTATCATTGGCACAGGCCAGTGCTGAACCGTAGGTGGAGTAGGCTGTGCCTTCtGAAGCAGTATCTATTCACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCACAGAAGGACTGAAGAGTCTGACAG|ATCTTGACAACTTTAAAACAAG...CACTGTGTCTGTCCGTCGAGGTCAAGGAATGGTGCTACTGTGTGGCCCGCCACCCCATTCTGGAG___AGCTGAGTTATGCCTGGATCTTCAATGAATACCCTT MLRCLYHWHRPVLNRRWSRLCLlKQYLFTMKLQSPEFQSLFTEGLKSLT|dLDNFKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12774 PPP6R3::TENM4 ENSG00000110075.15::ENSG00000149256.16 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1268 TRUE 2249 TRUE 867 PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68460827:+ chr11:68228199-68382802:+ chr11:68228295:+ TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79215909:- chr11:78363874-79152074:- chr11:78926954:- chr11:68491442,chr11:68491433 chr11:79272433,chr11:79272447 NA NA chr11:68258910,chr11:68258901 chr11:78983478,chr11:78983492 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion medium none |EGF-like_domain(100%),GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%),Teneurin_Intracellular_Region(100%) |EGF_2(100%),RHS_repeat(100%),Ten_N(100%),Tox-GHH(100%),hEGF(100%) 0 5 0 680 69 ENST00000393800.7 ENST00000527736.5 downstream downstream mismatches(7) TCGGTGAGCGCGTTTCCCGCCTGAGCGCAACTAGCGGCGGGgCGTGGGgACCTCCAG|AAAAGATCCCGCACCATCCTCCAGGATCCAATGGCCTTGGAGAGAGGGCTGCAGGGCCCACGGACATTGCTGACTCTTCAGAACGTGCTGACATGGAGCCAG___ACCACTCGGCCCTGAGTGCGGCGAGGACCCTGTTTGTGGATGTGGAGGAGCGCGGGCCGGAGGCCATGGACGTGAAGGAGAGGAAGCCTTACCGCTCGCTGACCCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12775 PPP6R3::TENM4 ENSG00000110075.15::ENSG00000149256.16 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2249 TRUE 867 PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68460827:+ chr11:68228199-68382802:+ chr11:68228295:+ TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79221123:- chr11:78363874-79152074:- chr11:78932168:- chr11:68491442,chr11:68491433 chr11:79272433,chr11:79272447 NA NA chr11:68258910,chr11:68258901 chr11:78983478,chr11:78983492 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none |EGF-like_domain(100%),GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%),Teneurin_Intracellular_Region(100%) |EGF_2(100%),RHS_repeat(100%),Ten_N(100%),Tox-GHH(100%),hEGF(100%) 0 4 0 680 9 ENST00000528635.5 ENST00000278550.12 downstream downstream inconsistently_clipped(1),mismatches(1) CCGCCATTTTGGGCGCTTCGCTGATGGTGTCGGTGAGCGCGTTTCCCGCCTGAGCGCAACTAGCGGCGGG?CGTGGGCACCTCCAG|GATGCCTTTGAACTCTGGATCTCTCCACCTGGTCTGATTCTGTCCAGAGGCCTGGGAGGATTGGCATTATTAAGATGTTATTGAAAATGCTGGCACATATAATCGGCTTGGATTAGAAACCAAAGCTCTTCGCAGAGTAACAAG___AAAAGATCCCGC...GAAGATTTAAAGAAAA___ACCACTCGGCCCTGAGTGCGGCGAGGACCCTGTTTGTGGATGTGGAGGAGCGCGGGCCGGAGGCCATGGACGTGAAGGAGAGGAAGCCTTACCGCTCGCTGACCCGGCGCCGCGACGCCGAGCGCCGCTACACCAGCTCGTCCGCGGACAGCGAGGAGGGCAAAGCCCCGCAGAAATCGTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12776 PPP6R3::TENM4 ENSG00000110075.15::ENSG00000149256.16 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2249 TRUE 867 PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68471619:+ chr11:68228199-68382802:+ chr11:68239087:+ TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79215909:- chr11:78363874-79152074:- chr11:78926954:- chr11:68491442,chr11:68491433 chr11:79272433,chr11:79272447 NA NA chr11:68258910,chr11:68258901 chr11:78983478,chr11:78983492 NA NA sense sense unknown intron 5'UTR/splice-site inversion low none |EGF-like_domain(100%),GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%),Teneurin_Intracellular_Region(100%) |EGF_2(100%),RHS_repeat(100%),Ten_N(100%),Tox-GHH(100%),hEGF(100%) 0 1 1 6 69 unknown ENST00000278550.12 downstream downstream mismatches(1) CTGGAAGGGAGCATTCACAAGtATTGAGAGAAGAGAAAG|AAAAGATCCCGCACCATCCTCCAGGATCCAATGGCCTTGGAGAGAGGGCTGCAGGGCCCACGGACATTGCTGACTCTTCAGAACGTGCTGACATGGAGCCAG___GGGTACGACCTGGATGATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12788 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77862748:+ chr16:77822461-78014004:+ chr16:77896645:+ chr16:78230783,chr16:78230780 chr16:77839915,chr16:77839909 NA NA chr16:78264680,chr16:78264677 chr16:77873812,chr16:77873806 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none WW_domain(100%),short_chain_dehydrogenase(33%)|Zinc-binding_dehydrogenase(100%) KR(15%),WW(100%),adh_short(4%),adh_short_C2(15%)|ADH_zinc_N(30%),ADH_zinc_N_2(100%) 1 1 0 151 54 ENST00000683929.1 ENST00000302536.3 downstream upstream none GGCGTTTACTGTGGATGATAATCCGACCAAGCCAACCACCCGGCAAAGATACGACGGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTG...GTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG|GGTCAAGCTGTGGCTCAGCTGTGTTCCACTGTCCCCAACGTGACTGTCTTTGGAACAGCCTCTACTTTCAAGCATGAAGCAATCAAAGACTCTGTGACCCACCTCTTTGACAGAAATGCAG AHVILACRNMARASEAVSRILEEW|GQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 TRUE,FALSE 78005747,77850818 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12824 KIFC3::CNGB1 ENSG00000140859.16::ENSG00000070729.14 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary arriba TRUE TRUE TRUE 1271 FALSE NA FALSE NA KIFC3 ENSG00000140859.16 protein_coding - - chr16:57758217-57863053:- chr16:57794999:- chr16:57792129-57896957:- chr16:57828911:- CNGB1 ENSG00000070729.14 protein_coding - - chr16:57882340-57971128:- chr16:57931878:- chr16:57916244-58005032:- chr16:57965782:- chr16:57792294,chr16:57792298 chr16:57933699,chr16:57933700 NA NA chr16:57826206,chr16:57826210 chr16:57967603,chr16:57967604 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cyclic_nucleotide-binding_domain(100%) |cNMP_binding(100%) 3 5 4 262 12 ENST00000565684.5 ENST00000251102.13 upstream downstream mismatches(1) CCCGGCCGCCCGCCCTTTCCCACACACCGGCCCGGGGAGGTTGAGAACTG___GGCGTGGAAAAGATACCCCAGTCTGCGGTGACGAGGACTCCAGTGCCCGAAGTGCAGCTCGCCCAGCCCTAGCTCAGTGCCGAGCCCTTAGCGTGGACTGGGCTGGCCCCGGAAGCCCCCACGGGCTCTACCTGACCCTGCAG|TGCCTGCCACGAAACAGCACCCAGAAGTGCAGGTGGAAGATACTGATGCTGATAGCTGCCCCCTCATGGCAGAAGAGAATCCACCCTCAACCGTGTTGCCGCCACCGTCTCCTGCCAAATCAGACACCCTTATAGTCCCAAGCTCAGCCTCGGGGACACACAG___GAAGAAGCTGCCCTCTGAGGATGATGAGGCTGAAGAGCTCAAGGCGTTGTCACCAGCAGAGTCCCCAGTGGTTGCCTGGTCTGACCCCACC PAARPFPHTGPGRLRTGRGKDTPVCGDEDSSARSAARPALAQCRALSVDWAGPGSPHGLYLTLQ|clprnstqkcrwkilmliaapswqkrihpqpccrhrllpnqtpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Lung,Liver no_match TRUE Lung adenocarcinoma LUNG no_match 57828911|57819376 TRUE|FALSE 57921978|57921978 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12826 ARHGEF11::ETV3L ENSG00000132694.19::ENSG00000253831.3 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2259 FALSE NA ARHGEF11 ENSG00000132694.19 protein_coding - - chr1:156934840-157045742:- chr1:157044299:- chr1:156904632-157015534:- chr1:157014091:- ETV3L ENSG00000253831.3 protein_coding - - chr1:157092043-157112412:- chr1:157093127:- chr1:157061835-157082204:- chr1:157062919:- chr1:157032439 chr1:157098080 NA NA chr1:157002231 chr1:157067872 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none none 0 0 0 94 13 ENST00000368194.8 ENST00000671942.1 upstream downstream mismatches(1) CCAGAGTATAGACAG|GACTTGGCTCTGCCCCAGGCCCCTGCCGGCTGGGCCTTTGCTGCCATTTGGGGAGCGTCCAAGGCGAGCTGCCTGGTGTTGC QSIDr|twlcprplpagpllpfgerprraawc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12827 FOXP4-AS1::ENSG00000290563 ENSG00000234753.7::ENSG00000290563.1 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXP4-AS1 ENSG00000234753.7 lncRNA - - chr6:41452889-41548621:- chr6:41546089:- chr6:41420627-41516359:- chr6:41513827:- ENSG00000290563 ENSG00000290563.1 lncRNA - + chr6:41208713-41217947:- chr6:41217463:+ chr6:41176451-41185685:- chr6:41185201:+ chr6:41544729,chr6:41544732,chr6:41544735 chr6:41215658,chr6:41215655,chr6:41215655 NA NA chr6:41512467,chr6:41512470,chr6:41512473 chr6:41183396,chr6:41183393,chr6:41183393 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 2 2 4 324 107 ENST00000414386.7 unknown upstream upstream none AACTGGCAGTGGACTGAAG___...?GAGAGAGCAAGCGGCGG?GGG?GGGGAGACCAACTTCTAGTGCTACCATAATTCGCCTAAAGCAGGTGCAGCAACTTTCACCCCGCCTGGCAGCCCGCTGAGAGCGAGAGAAAACCACGTGCACCAAACTTTAGGGGAGGAAAAATGGGAACGTGGGGAGAAGACGTGAGGCGGCAGATCTGAAAAAGATG|TTGAGGCCAGGATGTGCCGGGTGAAGGAGAGGTGAGAGTCCATGTCTGGGTACAGGATCTTTGCTCCCTTCGGACCAGAGCAGAAGACCTGGCAGGATGGGGGATGATAGAGGCATGGGAGTGG___TGTTGTAGATTTCACACCAGTAGGATCCCaAGTCCTCCTTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12828 FOXP4-AS1::TREML3P ENSG00000234753.7::ENSG00000184106.9 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXP4-AS1 ENSG00000234753.7 lncRNA - - chr6:41452889-41548621:- chr6:41546089:- chr6:41420627-41516359:- chr6:41513827:- TREML3P ENSG00000184106.9 transcribed_unprocessed_pseudogene - + chr6:41209634-41217947:- chr6:41217463:+ chr6:41177372-41185685:- chr6:41185201:+ chr6:41544729,chr6:41544732,chr6:41544735 chr6:41215658,chr6:41215655,chr6:41215655 NA NA chr6:41512467,chr6:41512470,chr6:41512473 chr6:41183396,chr6:41183393,chr6:41183393 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 2 2 4 324 107 ENST00000414386.7 unknown upstream upstream none AACTGGCAGTGGACTGAAG___...?GAGAGAGCAAGCGGCGG?GGG?GGGGAGACCAACTTCTAGTGCTACCATAATTCGCCTAAAGCAGGTGCAGCAACTTTCACCCCGCCTGGCAGCCCGCTGAGAGCGAGAGAAAACCACGTGCACCAAACTTTAGGGGAGGAAAAATGGGAACGTGGGGAGAAGACGTGAGGCGGCAGATCTGAAAAAGATG|TTGAGGCCAGGATGTGCCGGGTGAAGGAGAGGTGAGAGTCCATGTCTGGGTACAGGATCTTTGCTCCCTTCGGACCAGAGCAGAAGACCTGGCAGGATGGGGGATGATAGAGGCATGGGAGTGG___TGTTGTAGATTTCACACCAGTAGGATCCCaAGTCCTCCTTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12843 ANAPC16::ASCC1 ENSG00000166295.9::ENSG00000138303.19 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ANAPC16 ENSG00000166295.9 protein_coding + + chr10:72216000-72235860:+ chr10:72216072:+ chr10:73975758-73995618:+ chr10:73975830:+ ASCC1 ENSG00000138303.19 protein_coding - + chr10:72096032-72217134:- chr10:72215443:+ chr10:73855790-73976892:- chr10:73975201:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' low none none none 0 6 0 742 19 ENST00000615507.4 unknown downstream upstream duplicates(2),multimappers(1) GTTGGGGGGCGAACACGCCGCGGTCCTCGTCGTG|AACCAAGAAGAGGTTTCGTGAGAAATAACAACACAGAAGGTAAACCGACATGGATGGAGGAAAAGGGCACATCATTAGCAATACTCGATGACATCACAACCCAGTGGCCTATTCCCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12861 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1273 TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(42%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(28%),Gasdermin_C(100%) 2 301 0 602 5147 ENST00000522927.5 ENST00000523371.5 upstream downstream duplicates(49),mismatches(53) GGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAG___AGAAGGATGGTGCTTCATCCTGTTTAG___GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGA___GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAG MSRFKFI|gs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12862 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none TatD_related_DNase(0%)|Gasdermin_PUB_domain(62%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin_C(79%) 1 296 0 602 5592 ENST00000522927.5 ENST00000418519.6 upstream downstream duplicates(41),mismappers(1),mismatches(51),multimappers(3) TGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAG___AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAG___GTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGG MSRFKFI|gi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12863 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(42%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(28%),Gasdermin_C(100%) 31 160 32 168 5147 ENST00000519232.5 ENST00000418519.6 upstream downstream duplicates(20),low_entropy(1),mismatches(25) CAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAG___GGCCAAAGGGAAGTGACCATCCCCCCAAATCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12864 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none TatD_related_DNase(0%)|Gasdermin_PUB_domain(62%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin_C(79%) 10 34 4 168 5592 ENST00000519232.5 ENST00000418519.6 upstream downstream duplicates(4),mismatches(19) CAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAG___AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12865 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538331:- chr8:125500726-125551699:- chr8:125550572:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(42%) Complex1_LYR(100%),TatD_DNase(1%)|Gasdermin(28%),Gasdermin_C(100%) 1 0 36 33 5147 ENST00000521546.5 ENST00000523371.5 upstream downstream duplicates(9),mismatches(2) CAATGATCCAGTCGGCATCAGTAGAACGAGAGGGAGAATGCTGCGGGATTTAAATGGGCATGATCCTCGTTTTGTGGGGTTTCCAGCTACCTGAAGGTGGG...CTGCTTTAGCAAG|GAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAG___AGAAGGATGGTGCTTCATCCTGTTTAG...___GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12866 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1274 TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39906271:- chr17:38060848-38076107:- chr17:38062524:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin_C(100%) 0 21 0 602 5266 ENST00000522927.5 ENST00000418519.6 upstream downstream duplicates(2),mismatches(3) TGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGA___GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCA MSRFKFI|gKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12867 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39906987:- chr17:38060848-38076107:- chr17:38063240:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(0%),Gasdermin_C(100%) 0 21 0 602 3061 ENST00000522927.5 ENST00000418519.6 upstream downstream duplicates(4) GGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|AGAAGGATGGTGCTTCATCCTGTTTAG___GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGC...___GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGC MSRFKFI|eKDGASSCLGKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12868 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909042:- chr17:38060848-38076107:- chr17:38065295:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation medium none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(17%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(19%),Gasdermin_C(100%) 1 5 13 168 2884 ENST00000520938.3 ENST00000418519.6 upstream downstream mismatches(3) AGTCGCTTCAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCTTGTCTTCCCCAACAAGGAGACGATGA___ATATTCATTTCAGGGGCAAAACAAAATCCTTTCCAGAAG___AGAAGGATGGTGCTTCATCCTGTTTAG___GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGAC...AAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGA___GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCT...TCTGAAGAGCAGCAGTTgGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAG___GTGAAATCTGTCATGGAGCAGAACTGGGATGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12869 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39906271:- chr17:38060848-38076107:- chr17:38062524:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation medium none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin_C(100%) 0 1 10 168 5266 ENST00000520938.3 ENST00000418519.6 upstream downstream duplicates(1),mismatches(2) AGTCGCTTCAAGTTTATCGGTAAGAGGAGCGTTTTCCACGCCCTTGGGTCTTTCTGACTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|GAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGA___GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACgAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12870 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905496:- chr17:38060848-38076107:- chr17:38061749:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none TatD_related_DNase(0%)|Gasdermin_PUB_domain(26%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin_C(42%) 0 2 0 602 4720 ENST00000522927.5 ENST00000418519.6 upstream downstream none GGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAG___GTGAAATCTGTCATGGA...CTGGCTGAGGGGCCTcCCTCTGTCTCTTCCTAACTACAAAAGCCCTTTCcCCCCACAAGCCTCTGGGTTTTCCCTTTACCAGTCTGTCCTCACTGCCATCG MSRFKFI|eLSEEQQFVAEALEKGTLPLLKDQVKSVM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12871 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39908214:- chr17:38060848-38076107:- chr17:38064467:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(5%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(11%),Gasdermin_C(100%) 0 2 0 602 1762 ENST00000522927.5 ENST00000520542.5 upstream downstream none CTGGGGAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|ATATTCATTTCAGGGGCAAAACAAAATCCTTTCCAGAAG___GAAAGTCTTTGGGTT...CATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGA___GTATCTGAGGTCCTGATTTCCGGGGAG MSRFKFI|dIHFRGKTKSFPEGKSLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12872 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909042:- chr17:38060848-38076107:- chr17:38065295:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none TatD_related_DNase(0%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(17%) Complex1_LYR(100%),TatD_DNase(0%)|Gasdermin(19%),Gasdermin_C(100%) 0 1 0 602 2884 ENST00000522927.5 ENST00000394175.6 upstream downstream none CAaGCGCAGTCATGAGTCGCTTCAAGTTTATCG|GGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCTTGTCTTCCC...TGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAG MSRFKFI|gpkgsdhppksgpelsskaacl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12878 CCDC85C::SETD3 ENSG00000205476.9::ENSG00000183576.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1278 TRUE 2267 TRUE 869 CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536015:- chr14:99966527-100070544:- chr14:100002352:- SETD3 ENSG00000183576.13 protein_coding - - chr14:99397748-99480889:- chr14:99413934:- chr14:99864085-99947226:- chr14:99880271:- chr14:99523163,chr14:99523165 chr14:99430829,chr14:99430828 NA NA chr14:99989500,chr14:99989502 chr14:99897166,chr14:99897165 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none CCDC85_family(100%)|Rubisco_LSMT_substrate-binding(100%),SET_domain(42%) CCDC85(100%)|Rubis-subs-bind(100%),SET(15%) 80 108 51 390 371 ENST00000380243.9 ENST00000331768.10 upstream downstream duplicates(16),low_entropy(3),mismappers(2),mismatches(12) GCAGGAGCCACACGTCGGTCCCTGGACGACTTGTCGGCGCCGCCGCACCACCGCAGCATCCCCAACGGCCTGCACG___ATCCCTCATCCACCTACATCAGGCAACTGGAGAGCAAAGTGAGGCTGCTGGAGGGTGACAAGCTCCTCGCACAG|ACCCATCCTCATGCCAACAAACTACCCTTGAAGGATTCTTTCACTTACGAGGACTACAG___GTGGGCAGTCTCTTCTGTTATGACGAGGCAAAACCAAATTCCCACAGAGGATGGTTCCCGCGTGACCCTGGCTCTGATTCCTTTATGGGATATGTGTAACCACACCAACGGCCTG___ATCACTACTGGTTACAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGG AGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQ|THPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Large_intestine exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12879 CCDC85C::SETD3 ENSG00000205476.9::ENSG00000183576.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1279 TRUE 2267 TRUE 869 CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536015:- chr14:99966527-100070544:- chr14:100002352:- SETD3 ENSG00000183576.13 protein_coding - - chr14:99397748-99480889:- chr14:99406590:- chr14:99864085-99947226:- chr14:99872927:- chr14:99523163,chr14:99523165 chr14:99430829,chr14:99430828 NA NA chr14:99989500,chr14:99989502 chr14:99897166,chr14:99897165 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none CCDC85_family(100%)|Rubisco_LSMT_substrate-binding(100%),SET_domain(14%) CCDC85(100%)|Rubis-subs-bind(100%),SET(2%) 21 15 19 390 412 ENST00000380243.9 ENST00000331768.10 upstream downstream duplicates(2),low_entropy(1),mismatches(4) CCACCACGTCCCACCCCCGCTGCTGCCCCCCGGGCCGCACAAGGCCCCCGACGGCAAGGCAGGAGCCACACGTCGGTCCCTGGACGACTTGTCGGCGCCGCCGCACCACCGCAGCATCCCCAACGGCCTGCACG___ATCCCTCATCCACCTACATCAGGCAACTGGAGAGCAAAGTGAGGCTGCTGGAGGGTGACAAGCTCCTCGCACAG|ATCACTACTGGTTACAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGATTTTCGGGCTGGAGAGCAG___ATTTACATTTTTTATGGCACTCGATCCAACGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACAATAACTCACACGACAGAGTGAAAATAAAGCTTGGAGTGAGTAAAAGTGACAGACTCTACGCCATGAAGGCCGAGGTCTTGGCTCGTGCCGGCATCCCCAC___TTCCAGTGTTTTTGCATTGCATTTTACC HHVPPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQ|ITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Large_intestine exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12880 DSP::ENSG00000232234 ENSG00000096696.16::ENSG00000232234.4 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DSP ENSG00000096696.16 protein_coding + + chr6:7541338-7586714:+ chr6:7542085:+ chr6:7541571-7586947:+ chr6:7542318:+ ENSG00000232234 ENSG00000232234.4 lncRNA + - chr6:8102711-8343139:+ chr6:8222576:- chr6:8102944-8343372:+ chr6:8222809:- chr6:7549742,chr6:7549741 chr6:8238234,chr6:8238235 NA NA chr6:7549975,chr6:7549974 chr6:8238467,chr6:8238468 NA NA sense antisense stop-codon CDS/splice-site intron inversion/3'-3' high none none none 27 58 38 458 164 ENST00000710359.1 unknown downstream downstream duplicates(10),mismatches(9) CAGCTTTCCTCCCGCTCCTGCCCCCGGCCCGTCGCCGTCTCCGCGCTCGCAGCGGCCTCGGGAGGGCCCAGGTAGCGAGCAGCGACCTCGCGAGCCTTCCGCACTCCCGC...GGCTCCCACCCGCGGATCAACACTCTGGGCCGCATGATCCGCGCCGAGTCTGGCCCGGACCTGCGCTACGAGGTGACCAGCGGCGGCGGGGGCACCAGCAGGATGTACTATTCTCGGCGCGGCGTGATCACCGACCAGAACTCGGACGGCTACTG|AATCGTTCTTGGACACTGCTCTCACTGAGCTTACCaTCAGGACTTGATTTCCATGGAGAAGTTTGATTCCCTCCAATACGCTGGCTGCCAGCCCTCCTCACTAAGAAAG___TGCCCATCCTACTGGATCACAGCTGCCCGGTCACTATTCAGCACATACAGGCACTAAGCAAAGCACAGAACTGGACACTGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12881 ANKHD1::PCDH1 ENSG00000131503.21::ENSG00000156453.14 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1280 FALSE NA FALSE NA ANKHD1 ENSG00000131503.21 protein_coding + + chr5:140401814-140539856:+ chr5:140445975:+ chr5:139781399-139919441:+ chr5:139825560:+ PCDH1 ENSG00000156453.14 protein_coding - - chr5:141853090-141879246:- chr5:141854436:- chr5:141232655-141258811:- chr5:141234001:- chr5:140447349,chr5:140447486,chr5:140447348 chr5:141857384,chr5:141857386,chr5:141857385 NA NA chr5:139826934,chr5:139827071,chr5:139826933 chr5:141236949,chr5:141236951,chr5:141236950 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Ankyrin_repeats_(3_copies)(13%)| Ank(13%),Ank_2(12%),Ank_3(23%),Ank_4(15%),Ank_5(56%)| 42 52 29 711 199 ENST00000360839.7 ENST00000287008.8 downstream downstream duplicates(5),low_entropy(1),mismappers(1),mismatches(4) GGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAATATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCATGGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAG|ACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATGTACCCGGGAGTGCAGTGAGTTTGGCCACTCTGACACATGCTGGATGCCTGGCCAGTCATCTCCCAGCCGCCGGACCAAGAGCAGCGCCCTCAAACTCTCC GFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYK|dLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12882 ANKHD1-EIF4EBP3::PCDH1 ENSG00000254996.5::ENSG00000156453.14 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKHD1-EIF4EBP3 ENSG00000254996.5 protein_coding + + chr5:140401908-140549569:+ chr5:140445975:+ chr5:139781493-139929154:+ chr5:139825560:+ PCDH1 ENSG00000156453.14 protein_coding - - chr5:141853090-141879246:- chr5:141854436:- chr5:141232655-141258811:- chr5:141234001:- chr5:140447349,chr5:140447486,chr5:140447348 chr5:141857384,chr5:141857386,chr5:141857385 NA NA chr5:139826934,chr5:139827071,chr5:139826933 chr5:141236949,chr5:141236951,chr5:141236950 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Ankyrin_repeats_(3_copies)(12%)| Ank(14%),Ank_2(15%),Ank_3(23%),Ank_4(15%),Ank_5(59%)| 42 52 29 711 199 ENST00000532219.5 ENST00000287008.8 downstream downstream duplicates(5),low_entropy(1),mismappers(1),mismatches(4) GGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAATATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCATGGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAG|ACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATGTACCCGGGAGTGCAGTGAGTTTGGCCACTCTGACACATGCTGGATGCCTGGCCAGTCATCTCCCAGCCGCCGGACCAAGAGCAGCGCCCTCAAACTCTCC GFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYK|dLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12883 DSP::ENSG00000285216 ENSG00000096696.16::ENSG00000285216.1 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DSP ENSG00000096696.16 protein_coding + + chr6:7541338-7586714:+ chr6:7542085:+ chr6:7541571-7586947:+ chr6:7542318:+ ENSG00000285216 ENSG00000285216.1 lncRNA + - chr6:8158162-8760447:+ chr6:8222576:- chr6:8158395-8760680:+ chr6:8222809:- chr6:7549742,chr6:7549741 chr6:8238234,chr6:8238235 NA NA chr6:7549975,chr6:7549974 chr6:8238467,chr6:8238468 NA NA sense antisense stop-codon CDS/splice-site intron inversion/3'-3' high none none none 27 58 38 458 164 ENST00000710359.1 unknown downstream downstream duplicates(10),mismatches(9) CAGCTTTCCTCCCGCTCCTGCCCCCGGCCCGTCGCCGTCTCCGCGCTCGCAGCGGCCTCGGGAGGGCCCAGGTAGCGAGCAGCGACCTCGCGAGCCTTCCGCACTCCCGC...GGCTCCCACCCGCGGATCAACACTCTGGGCCGCATGATCCGCGCCGAGTCTGGCCCGGACCTGCGCTACGAGGTGACCAGCGGCGGCGGGGGCACCAGCAGGATGTACTATTCTCGGCGCGGCGTGATCACCGACCAGAACTCGGACGGCTACTG|AATCGTTCTTGGACACTGCTCTCACTGAGCTTACCaTCAGGACTTGATTTCCATGGAGAAGTTTGATTCCCTCCAATACGCTGGCTGCCAGCCCTCCTCACTAAGAAAG___TGCCCATCCTACTGGATCACAGCTGCCCGGTCACTATTCAGCACATACAGGCACTAAGCAAAGCACAGAACTGGACACTGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12884 CSE1L::ENSG00000283529 ENSG00000124207.17::ENSG00000283529.2 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2268 TRUE 870 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49340320:+ chr20:47934874-47956974:+ chr20:47956857:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Cse1(42%),Importin-beta_N-terminal_domain(100%)| Cse1(33%),IBN_N(100%)| 33 49 35 1676 158 ENST00000262982.3 ENST00000636663.1 downstream upstream duplicates(4),mismatches(3) ACTTGGATGAATAATTTTCATACTCTCTTAACATTGGATAATAAGCTTTTACAAACTGAT___GATGAAGAGGAAGCCGGCTTATTGGAGCTCTTAAAATCCCAGATTTGTGATAATGCCGCACTCTATGCACAAAAGTACGATGAAGAATTCCAGCGATACCTGCCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAACGGGTCAAGAGGTTAAATATGATTTG|GAACAAGATGTGGCTGTGGCAAGCGGCCAGCCATCCCCGGTGCCGAGGGACCTGGGAGAAGCTAGGGCAGCTCCGGCATTGTTCCTGCCCTGTGGTCCACAGCCTCGTCTTCATCTAGCGTCTGCACCCCCTAACCGTCTTTCCAAAGCCTCGGGGATGGCAGGGAAACTGCAGGGCTTGGGATCCCGCAGAACCAAAGAGTTGGGAGAAATCTGCAATTTTGAG TWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDL|eqdvavasgqpspvprdlgearaapalflpcgpqprlhlasappnrlskasgmagklqglgsrrtkelgeicnf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12885 CSE1L::ENSG00000283529 ENSG00000124207.17::ENSG00000283529.2 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2268 TRUE 870 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49335520:+ chr20:47934874-47956974:+ chr20:47952057:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Cse1(42%),Importin-beta_N-terminal_domain(100%)| Cse1(33%),IBN_N(100%)| 6 3 36 1676 19 ENST00000262982.3 ENST00000636663.1 downstream upstream duplicates(1),mismatches(1) TGGAAACTTGGATGAATAATTTTCATACTCTCTTAACATTGGATAATAAGCTTTTACAAACTGAT___GATGAAGAGGAAGCCGGCTTATTGGAGCTCTTAAAATCCCAGATTTGTGATAATGCCGCACTCTATGCACAAAAGTACGATGAAGAATTCCAGCGATACCTGCCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAACGGGTCAAGAGGTTAAATATGATTTG|GTACTGTGTCCAGTTCCAGTTGGGGTCCATTCCAGGGAGCTGCGGGCAGGCGAGGGCACCCCATGCCCAGTGGACAAG___...CGGGGACGGTGGTGGGGCCAAAGG___GAACAAGATGTGGCTGTGGCAAGCGGCCAGCCATCCCCGGTGCCGAGGGACCTGGGAGAAGCTAGGGCAGCTCCGG ETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDL|vlcpvpvgvhsrelragegtpcpvdk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12886 CSE1L::ENSG00000283529 ENSG00000124207.17::ENSG00000283529.2 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2268 TRUE 870 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49070297:+ chr20:47662783-47713497:+ chr20:47686834:+ ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49340320:+ chr20:47934874-47956974:+ chr20:47956857:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Cse1(27%),Importin-beta_N-terminal_domain(100%)| Cse1(21%),IBN_N(100%)| 2 1 8 1466 158 ENST00000396192.7 ENST00000636663.1 downstream upstream none CTGCAGTACCCATGCAAATGATGCCTCTGCCCTGAGGATTCTGTTTTCTTCCCTGATCCTGATCTCAAAATTGTTCTATAGTTTAAACTTTCAG___GATCTCCCTGAATTTTTTGAAGATAATATGGAAACTTGGATGAATAATTTTCATACTCTCTTAACATTGGATAATAAGCTTTTACAAACTGAT|GAACAAGATGTGGCTGTGGCAAGCGGCCAGCCATCCCCGGTGCCGAGGGACCTGGGAGAAGCTAGGGCAGCTCCGGCATTGTTCCTGCCCTGTGGTCCACAGCCTCGTCTTCATCTAGCGTCTGCACCCCCTAACCGTCTTTCCAAAGCCTCGGGGATGGCAGGGAAACTGCAG CSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTD|eqdvavasgqpspvprdlgearaapalflpcgpqprlhlasappnrlskasgmagkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12891 SUMF1::LRRFIP2 ENSG00000144455.14::ENSG00000093167.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1282 TRUE 2270 TRUE 871 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4376330:- chr3:3742498-4508957:- chr3:4418014:- LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37129149:- chr3:37094117-37225180:- chr3:37170640:- chr3:4321770,chr3:4321776 chr3:37141903,chr3:37141906 NA NA chr3:4363454,chr3:4363460 chr3:37183394,chr3:37183397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Sulfatase-modifying_factor_enzyme_1(89%)|LRRFIP_family(100%) FGE-sulfatase(22%)|LRRFIP(100%) 42 16 33 405 323 ENST00000448413.5 ENST00000354379.8 upstream downstream duplicates(6),mismappers(1),mismatches(1) CTTCCCTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA___AAAGGTCCCCCTTCTGGGAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGG|GCAGAGGCAAGGCTGGCAGCAAAACGGGCTGCCCGGGCAGAAGCAAGAGATATACGCATGAGAGAACTGGAACGACAACAAAAAGAG___GAAGATTCGG...___TTGGATGAAAAATCTGACAAACAGTATGCTGAA FPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHR|AEARLAAKRAARAEARDIRMRELERQQKEeds NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12892 SUMF1::LRRFIP2 ENSG00000144455.14::ENSG00000093167.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2270 TRUE 871 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4410865:- chr3:3742498-4508957:- chr3:4452549:- LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37129149:- chr3:37094117-37225180:- chr3:37170640:- chr3:4321770,chr3:4321776 chr3:37141903,chr3:37141906 NA NA chr3:4363454,chr3:4363460 chr3:37183394,chr3:37183397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Sulfatase-modifying_factor_enzyme_1(82%)|LRRFIP_family(100%) FGE-sulfatase(14%)|LRRFIP(100%) 2 3 14 502 323 ENST00000448413.5 ENST00000354379.8 upstream downstream mismatches(1) CCAAAGGCCAGCATTATGCCAACATTTGGCAGGGCGAGTTTCCGGTGACCAACACTGGTGAGGATGGCTTCCAAGGAACTGCGCCT___GTTGATGCCTTCCCTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA|GCAGAGGCAAGGCTGGCAGCAAAACGGGCTGCCCGGGCAGAAGCAAGAGATATACGCATGAGAGAACTGGAACGACAACAAAAAGAG___TTGGATGAAAAATCTGACAAACAGTATGCTGAAAATTATACA KGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNP|AEARLAAKRAARAEARDIRMRELERQQKELDEKSDKQYAENY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12893 SUMF1::LRRFIP2 ENSG00000144455.14::ENSG00000093167.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2270 TRUE 871 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4376330:- chr3:3742498-4508957:- chr3:4418014:- LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37121691:- chr3:37094117-37225180:- chr3:37163182:- chr3:4321770,chr3:4321776 chr3:37141903,chr3:37141906 NA NA chr3:4363454,chr3:4363460 chr3:37183394,chr3:37183397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Sulfatase-modifying_factor_enzyme_1(89%)|LRRFIP_family(89%) FGE-sulfatase(22%)|LRRFIP(89%) 0 1 10 405 91 ENST00000448413.5 ENST00000336686.9 upstream downstream mismatches(1) AACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA___AAAGGTCCCCCTTCTGGGAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGG|GAAGATTCGGAAAGGGCCAGGTATTCCCACCGGTCCAGTCACCATCGTCCTTATCTG___GGAGTTGAGGATGCATTGTCCATTCGAAGTGTTGGCAGTCACAG NIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHR|EDSERARYSHRSSHHRPYLGVEDALSIRSVGSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12894 SUMF1::LRRFIP2 ENSG00000144455.14::ENSG00000093167.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2270 TRUE 871 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4376330:- chr3:3742498-4508957:- chr3:4418014:- LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37096660:- chr3:37094117-37225180:- chr3:37138151:- chr3:4321770,chr3:4321776 chr3:37141903,chr3:37141906 NA NA chr3:4363454,chr3:4363460 chr3:37183394,chr3:37183397 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Sulfatase-modifying_factor_enzyme_1(89%)|LRRFIP_family(81%) FGE-sulfatase(22%)|LRRFIP(52%) 0 1 9 405 322 ENST00000448413.5 ENST00000354379.8 upstream downstream mismatches(1) AACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA___AAAGGTCCCCCTTCTGGGAAAGACCGAGTGAAGAAAGGTGGATCCTACATGTGCCATAGG|TTGGATGAAAAATCTGACAAACAGTATGCTGAAAATTATACAAGA___CCTTCATCTCGAAATTCTGCCTCAGCAACAACCCCTCTAAGTGGAAACTCATCCAGACGAGGAAGTGGGGACACCAGCAGCTTAATAGATCCAG NIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHR|LDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12895 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1283 TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(44%) |TRAPPC9-Trs120(21%) 20 42 27 191 157 ENST00000696786.1 ENST00000648948.2 upstream downstream duplicates(5),low_entropy(1),mismatches(2) CCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA|AAAAGAAAGATGTGGCCCAAAGCCTAGAGAACTATACGTCCAAGTGTCCTGGGACCATGGAGCCCATCGCCCTCCCTGGCGGCCTCACCCTGCCACCGGTGCCCTTCACCAAGCTTCCCATCGTCAG___GCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGCTGGGTCAGAAtGTGTCAACCAAAAGTCCTTTCATCTATTCACCAATTATCGCACACAACCGTGGAGAAGAGCGGAACAAGAAAATAG___ATTTCCAGTGGGTTCAAGGAGATGTGTGTGAAGTTCAGCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 TRUE|FALSE,TRUE|FALSE|FALSE,FALSE|TRUE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|TRUE|TRUE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12896 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1284 TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140948666:- chr8:141667999-142012315:- chr8:141958765:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(44%) |TRAPPC9-Trs120(21%) 4 9 35 36 157 ENST00000520045.5 ENST00000648948.2 upstream downstream duplicates(1),mismappers(1),mismatches(1) CGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA___ATCCATGGTTGGTTGAATCTGGATGTGGAACCCGCTGACGTGGATGGCTGACTGTATT|AAAAGAAAGATGTGGCCCAAAGCCTAGAGAACTATACGTCCAAGTGTCCTGGGACCATGGAGCCCATCGCCCTCCCTGGCGGCCTCACCCTGCCACCGGTGCCCTTCACCAAGCTTCCCATCGTCAG___GCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGCTGGGTCAGAAtGTGTCAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|TRUE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|TRUE|TRUE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12897 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141000880:- chr8:141667999-142012315:- chr8:142010979:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(44%) |TRAPPC9-Trs120(21%) 1 1 27 5 157 ENST00000523797.1 ENST00000648948.2 upstream downstream duplicates(1),mismatches(1) CCGGCCCCTCCCGCGCCCCCGGCCCGGGTTCTGGGAGGAGGGGAGGCCGGTGGCCGTGAGGAGGTTGGGGGCCCTCGCGGAGGCCGAGAGGCTTAAGGAG|AAAAGAAAGATGTGGCCCAAAGCCTAGAGAACTATACGTCCAAGTGTCCTGGGACCATGGAGCCCATCGCCCTCCCTGGCGGCCTCACCCTGCCACCGGTGCCCTTCACCAAGCTTCCCATCGTCAG___GCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGCTGGGTCAGAAtGTGTCAACCAAAAGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|TRUE|TRUE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12898 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140300614:- chr8:140739968-141468678:- chr8:141310713:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(33%) |TRAPPC9-Trs120(13%) 2 1 6 191 195 ENST00000696786.1 ENST00000648948.2 upstream downstream duplicates(1) CCGCCGCCGGTCCCGGACCACTGTGAGCCCGCGGCGTGAGGCGTGGGAGGAAGCGCGGCTGCTGTCGCCCAGCGCCGCCCCGTCGTCGTCTGCCTTCGCTTCACGGCGCCGAGCCGCGGTCCGA|GCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGCTGGGTCAGAAtGTGTCAACCAAAAGTCCTTTCATCTATTCACCAATTATCGCACACAACCGTGGAGAAGAGCGGAACAAGAAAATAG___ATTTCCAGTGGGTTCAAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 TRUE|FALSE,TRUE|FALSE|FALSE,FALSE|TRUE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12899 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - + chr8:140657900-141002216:- chr8:140932823:+ chr8:141667999-142012315:- chr8:141942922:+ TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933330,chr8:140933326 chr8:140343711,chr8:140343715 NA NA chr8:141943429,chr8:141943425 chr8:141353810,chr8:141353814 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(44%) |TRAPPC9-Trs120(21%) 0 3 0 46 157 unknown ENST00000648948.2 downstream downstream mismatches(1) ATCCTGACTAACAGCAGCAGAGACTAAAATCAACTGCCTCATCAGGGTACAACAGAAGACAAACAAGACGGGG|AAAAGAAAGATGTGGCCCAAAGCCTAGAGAACTATACGTCCAAGTGTCCTGGGACCATGGAGCCCATCGCCCTCCCTGGCGGCCTCACCCTGCCACCGGTGCCCTTCACCAAGCTTCCCATCGTCAG___GCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12908 FOXK2::NARF ENSG00000141568.21::ENSG00000141562.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1288 TRUE 2273 TRUE 873 FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82596191:+ chr17:80477589-80602538:+ chr17:80554067:+ NARF ENSG00000141562.19 protein_coding + + chr17:82458180-82490537:+ chr17:82468764:+ chr17:80416056-80448413:+ chr17:80426640:+ chr17:82596752,chr17:82596746 chr17:82468110,chr17:82468101 NA NA chr17:80554628,chr17:80554622 chr17:80425986,chr17:80425977 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none FHA_domain(100%),Forkhead_domain(100%)|Iron_hydrogenase_small_subunit(100%),Iron_only_hydrogenase_large_subunit__C-terminal_domain(100%) FHA(100%),Forkhead(100%)|Fe_hyd_SSU(100%),Fe_hyd_lg_C(100%) 15 16 4 50 510 ENST00000473637.6 ENST00000309794.16 downstream upstream duplicates(2),mismatches(1) GTTCCGAGTCAGCGTAGGAGAAAGGCCACTGGAAACCAGAGTCACACTGCGCGTCTGTGCATCTCTGGCCTACCGCAGTGGCCCCGGCTGTCTGCACATTTTTTGTAGACACATTAGAGTCGGTTGAGGCCACACCTGCGGCCACAGACTGCGACCGCGATTGCAGGGAGGAGCATCTGAGGTGGTCACGGGGTTTGCCCAGCTCACACCAACTGCAG|AAATGTGATACCTCAAAGCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGCCTTATTTTGCTGCTAAATTCAACCTCAGTGTAACTGATGCATCCAGAAGACTCTGTGGTTTCCTCAAAAGTCTTG___GGGTGCACTATGTATTTGATACGACGATAGCTGCGGATTTTAGTATCCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 80478183|80478183|80478183,80542064 FALSE|FALSE|FALSE,FALSE 80436676|80436447|80443373,80441592 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12909 FOXK2::NARF ENSG00000141568.21::ENSG00000141562.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2273 TRUE 873 FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82587272:+ chr17:80477589-80602538:+ chr17:80545148:+ NARF ENSG00000141562.19 protein_coding + + chr17:82458180-82490537:+ chr17:82468764:+ chr17:80416056-80448413:+ chr17:80426640:+ chr17:82596752,chr17:82596746 chr17:82468110,chr17:82468101 NA NA chr17:80554628,chr17:80554622 chr17:80425986,chr17:80425977 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FHA_domain(100%),Forkhead_domain(100%)|Iron_hydrogenase_small_subunit(100%),Iron_only_hydrogenase_large_subunit__C-terminal_domain(100%) FHA(100%),Forkhead(100%)|Fe_hyd_SSU(100%),Fe_hyd_lg_C(100%) 3 5 1 398 510 ENST00000335255.10 ENST00000577432.5 downstream upstream duplicates(2) CTAAGGCAGAGGCCCAGGAGAATGGAGACCACAGGGAAGTCAAAG___TGAAAGTAGAGCCTATTCCCGCCATTGGCCACGCCACGCTCGGCACTGCCAGCCGGATCATTCAGACGGCACAGACCACCCCGGTCCAGACGGTGACCATAGTACAACAGGCACCTCTAGGTCAACACCAGCTACCAATAAAAACTGTAACACAAAACGGCACTCACGTGGCATCAGTCCCCACTGCGGTCCACGGCCAGGTGAACAATG|AAATGTGATACCTCAAAGCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGCCTTATTTTGCTGCTAAATTCAACCTCAGTGTAACTGATGCATCCAGAAGACTCTGTGGTTTCCTCAAAAGTCTTG___GGGTGCACTATGTATTTGATACGACGATAGCTGCGGATTTTAG...GGAACGCACCCTGCCCATGCTGACCTCTGCCTGTCCTG___GCTGGGTCCGATACGCCGAGCGGGTGCTGGGTCGCCCCATCACTGCCCACCTCTGCACCGCCA KAEAQENGDHREVKVKVEPIPAIGHATLGTASRIIQTAQTTPVQTVTIVQQAPLGQHQLPIKTVTQNGTHVASVPTAVHGQVNN|em* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 80478183|80478183|80478183,80542064 FALSE|FALSE|FALSE,FALSE 80436676|80436447|80443373,80441592 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12910 FOXK2::NARF ENSG00000141568.21::ENSG00000141562.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2273 TRUE 873 FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82571870:+ chr17:80477589-80602538:+ chr17:80529746:+ NARF ENSG00000141562.19 protein_coding + + chr17:82458180-82490537:+ chr17:82468764:+ chr17:80416056-80448413:+ chr17:80426640:+ chr17:82596752,chr17:82596746 chr17:82468110,chr17:82468101 NA NA chr17:80554628,chr17:80554622 chr17:80425986,chr17:80425977 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none FHA_domain(100%),Forkhead_domain(55%)|Iron_hydrogenase_small_subunit(100%),Iron_only_hydrogenase_large_subunit__C-terminal_domain(100%) FHA(100%),Forkhead(1%)|Fe_hyd_SSU(100%),Fe_hyd_lg_C(100%) 0 1 0 254 510 ENST00000335255.10 ENST00000309794.16 downstream upstream none GATTTATACACACATCACTAAAAATTATCCCTACTACAGGACTGCGGACAAGGGCTGGCAG|AAATGTGATACCTCAAAGCACAAAGTGCTGGTAGTGTCTG...TCTTTGGTGAAGGATTATTTCGCCAGACAGCAG___AACCTGTCTCCAGAGAAGATTTTCCACGTCATTGTGGCCCCTTGTTATGACAAGAAGCTGGAGGCTCT IYTHITKNYPYYRTADKGWQ|KCDTSKHKVLVVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 80478183|80478183|80478183,80542064 FALSE|FALSE|FALSE,FALSE 80436676|80436447|80443373,80441592 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12911 TAF2::COLEC10 ENSG00000064313.13::ENSG00000184374.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1289 TRUE 2274 TRUE 874 TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119795532:- chr8:120743014-120845103:- chr8:120807772:- COLEC10 ENSG00000184374.3 protein_coding + + chr8:118995452-119108455:+ chr8:119102348:+ chr8:120007691-120120694:+ chr8:120114587:+ chr8:119791394,chr8:119791399 chr8:119095040,chr8:119095038 NA NA chr8:120803634,chr8:120803639 chr8:120107279,chr8:120107277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Collagen_triple_helix_repeat_(20_copies)(27%),Lectin_C-type_domain(100%) |Collagen(4%),Lectin_C(100%) 9 14 9 349 40 ENST00000378164.7 ENST00000332843.3 upstream upstream duplicates(2) CAGCAGTTTTTTGGTTGTTTCATATCTAGAATGTCTTG___GTCTGATGAATGGGTGCTGAAGGGAATTTCAGGCTATATCTATGGACTTTGGATGAAAAAAACTTTTGGTGTTAATGAGTACCGCCATTGGATTAAAGAG|GTGACAAAGGGGAAAAAGGTTTGCTTGGAATACCTGGAGAAAAAGGCAAAGCAG___GTACTGTCTGTGATTGTGGAAGATACCGGAAATTTGTTGGACAACTGGATATTAGTATTGCTCGGCTCAAGACATCTATGAAGTTTGTCAAGAATG___TGATAGCAGGGATTAGGGAAACTGAAGAGAAATTCTAC QQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKE|vtkgkkvcleylekkakqvlsvivedtgnlldnwilvllgsrhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12912 TAF2::COLEC10 ENSG00000064313.13::ENSG00000184374.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2274 TRUE 874 TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119793366:- chr8:120743014-120845103:- chr8:120805606:- COLEC10 ENSG00000184374.3 protein_coding + + chr8:118995452-119108455:+ chr8:119102348:+ chr8:120007691-120120694:+ chr8:120114587:+ chr8:119791394,chr8:119791399 chr8:119095040,chr8:119095038 NA NA chr8:120803634,chr8:120803639 chr8:120107279,chr8:120107277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Collagen_triple_helix_repeat_(20_copies)(27%),Lectin_C-type_domain(100%) |Collagen(4%),Lectin_C(100%) 0 1 12 321 40 ENST00000378164.7 ENST00000332843.3 upstream upstream duplicates(1) ATGGGTGCTGAAGGGAATTTCAGGCTATATCTATGGACTTTGGATGAAAAAAACTTTTGGTGTTAATGAGTACCGCCATTGGATTAAAGAG___GAGCTAGACAAAATAGTGGCATATGAACTAAAAACTGGTGGGGTTTT...GGTGGAGGAAAAGAGAAGGATAA|GTGACAAAGGGGAAAAAGGTTTGCTTGGAATACCTGGAGAAAAAGGCAAAGCAG___GTACTGTCTGTGATTGTGGAAGATACCGGAAATTTGTTGGACAACTGGATATTAGTATTGCTCGGCTCAAGACATCTATGAAGTTTGTCAAGAATG___TGATAGCAGGGATTAGGGAAACTGAAGAGAAATTCTACTACATCG GGGKEKDk|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12913 DHX35::ITCH ENSG00000101452.15::ENSG00000078747.17 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHX35 ENSG00000101452.15 protein_coding + + chr20:38962299-39039723:+ chr20:38969214:+ chr20:37590942-37668366:+ chr20:37597857:+ ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34369394:+ chr20:32951041-33099578:+ chr20:32957200:+ chr20:38969340,chr20:38969340 chr20:34366660,chr20:34366657 NA NA chr20:37597983,chr20:37597983 chr20:32954466,chr20:32954463 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |C2_domain(100%),HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) |C2(100%),HECT(100%),WW(100%) 18 2 11 87 223 ENST00000373325.6 ENST00000374864.10 downstream upstream duplicates(1),mismatches(1) CGTGGGACCGGTGAAGTTCTGGCGACCCG___GTACAGAGGGGCCAGGTGTAAGCATCTCTGAAGAGAGACAAAGTCTGGCTGAAAACTCTGGGACAACGGTTGTTTACAACCCTTATGCTGCCCTTTCCATAGAGCAGCAGAGGCAGAAGCTGCCGGTATTCAAG|GTACCATGCATTTCACaGTGGCCTTGTGGAGACAACGCCTTAACCCAAGGAAGTGACTCAAACTGTGAGAACTTCAG___GTTTTCCAACCTATTGGTGGTATGTCTGACAGTGGATCACAACTTGGTTCAATGGGTAGCCTCACCATGAAATCACAGCTTCAGAT VGPVKFWRPGTEGPGVSISEERQSLAENSGTTVVYNPYAALSIEQQRQKLPVFK|vpcisqwpcgdnaltqgsdsncenfrfsnllvvcltvdhnlvqwvasp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-644a chr20:34466325-34466418:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12914 TBC1D31::ZNF704 ENSG00000156787.17::ENSG00000164684.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1290 TRUE 2275 TRUE 875 TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123084340:+ chr8:124054208-124164393:+ chr8:124096580:+ ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821615:- chr8:81540686-81787016:- chr8:81733850:- chr8:123089742,chr8:123089736 chr8:80841639,chr8:80841645 NA NA chr8:124101982,chr8:124101976 chr8:81753874,chr8:81753880 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none DER1(100%),WD40(100%)| 10 7 14 366 449 ENST00000287380.6 ENST00000519936.2 downstream downstream mismatches(3) TGTTTTGATACAG___TCACCAAGGAGCTAGTTAGCTGGATGAGAGGACATGAATCATCAGTATTTTCGATCTCTGTGCATGCATCAGGGAAATATGCCATCACAACTTCTTCTGATACAGCACAATTATGGGACTTGGATACCTTTCAGAGAAAAAGAAAGCTGAATATTCGCCAGTCTGTGGGTATACAGAAG|GTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTCAGAGGACTTAAAACGTGACTGTGGTAAAAAAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGATGTGAAAACAtCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAG CFDTVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQK|VGSIKREMTFTFQSEDLKRDCGKKMSHQHVFSLAMEEDVKTsDTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12915 TBC1D31::ZNF704 ENSG00000156787.17::ENSG00000164684.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2275 TRUE 875 TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123077257:+ chr8:124054208-124164393:+ chr8:124089497:+ ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821615:- chr8:81540686-81787016:- chr8:81733850:- chr8:123089742,chr8:123089736 chr8:80841639,chr8:80841645 NA NA chr8:124101982,chr8:124101976 chr8:81753874,chr8:81753880 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none DER1(100%)| 2 1 2 526 449 ENST00000287380.6 ENST00000519936.2 downstream downstream duplicates(1) GGCAAGCTTCGCCATGCAGAGCACTGACCTAGGCAACAAGGAGAGCGGCAAGATATGGCACCGCAAGCCGTCCCCGGCCACGCGGGACGG___AATTATAGTGA...TTTGCGATTTTTGAATGTGGCTTTTGATGGCACAGGCGACTGCTTAATTGCTGGGGACCACCAAGGAAATATTTATGTTTTTGACTTACATGGAAACAG|GTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTCAGAGGACTTAAAACGTGACTGTGGTAAAAAAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGATGTGAAAACAtCAGACACCAAAAAAGCCAGCCGGATCCTTGACCAT LRFLNVAFDGTGDCLIAGDHQGNIYVFDLHGNr|wgalsgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12916 ZNF704::TBC1D31 ENSG00000164684.13::ENSG00000156787.17 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821374:- chr8:81540686-81787016:- chr8:81733609:- TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123077111:+ chr8:124054208-124164393:+ chr8:124089351:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%),WD40(100%) 2 0 0 651 638 ENST00000327835.7 ENST00000287380.6 upstream upstream none AAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGATGTGAAAACAtCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAG|AATTATAGTGAACATTATTCACAACACTTCCGATTACCATCCAAAAGTTTTGCGATTTTTGAATGTGGCTTTTGATGGCACAGGC MSHQHVFSLAMEEDVKTsDTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPAr|IIVNIIHNTSDYHPKVLRFLNVAFDGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12917 DHX35::ENSG00000289720 ENSG00000101452.15::ENSG00000289720.1 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHX35 ENSG00000101452.15 protein_coding + + chr20:38962299-39039723:+ chr20:38969214:+ chr20:37590942-37668366:+ chr20:37597857:+ ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34369394:+ chr20:32951077-33128727:+ chr20:32957200:+ chr20:38969340,chr20:38969340 chr20:34366660,chr20:34366657 NA NA chr20:37597983,chr20:37597983 chr20:32954466,chr20:32954463 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none none |C2(100%),HECT(100%),Robl_LC7(100%),WW(100%) 18 2 11 87 223 ENST00000373325.6 ENST00000696979.1 downstream upstream duplicates(1),mismatches(1) CGTGGGACCGGTGAAGTTCTGGCGACCCG___GTACAGAGGGGCCAGGTGTAAGCATCTCTGAAGAGAGACAAAGTCTGGCTGAAAACTCTGGGACAACGGTTGTTTACAACCCTTATGCTGCCCTTTCCATAGAGCAGCAGAGGCAGAAGCTGCCGGTATTCAAG|GTACCATGCATTTCACaGTGGCCTTGTGGAGACAACGCCTTAACCCAAGGAAGTGACTCAAACTGTGAGAACTTCAG___GTTTTCCAACCTATTGGTGGTATGTCTGACAGTGGATCACAACTTGGTTCAATGGGTAGCCTCACCATGAAATCACAGCTTCAGAT VGPVKFWRPGTEGPGVSISEERQSLAENSGTTVVYNPYAALSIEQQRQKLPVFK|vpcisqwpcgdnaltqgsdsncenfrfsnllvvcltvdhnlvqwvasp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12918 ATAD5::TLK2 ENSG00000176208.9::ENSG00000146872.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1291 TRUE 2276 TRUE 876 ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30879487:+ chr17:29158984-29222887:+ chr17:29206505:+ TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62573215:+ chr17:60536019-60692842:+ chr17:60650576:+ chr17:30883846,chr17:30884308,chr17:30883844 chr17:62570895,chr17:62570892,chr17:62570890 NA NA chr17:29210864,chr17:29211326,chr17:29210862 chr17:60648256,chr17:60648253,chr17:60648251 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)|Protein_kinase_domain(100%) AAA(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 7 11 7 40 160 ENST00000321990.5 ENST00000582809.5 downstream upstream duplicates(2),inconsistently_clipped(1),mismatches(1) CAACATCTCTTATTCTTTTTGAGGAG___GTTGATGTAATTTTTGATGAAGATGCTGGGTTTTTGAATGCAATCAAAACATTCATGGCAACAACTAAACGACCTGTAATCCTTACTACAAGTG___ACCCAACATTTAGTTTAATGTTTGATGGCTGCTTTGAAGAAATCAAGTTCAGTACTCCTTCCCTG|GCAACAGGAAAGGATAAATTCACAGAGGGAAGAGATAGAAAGACAACGGAAAATGTTAGCAAAGCGGAAACCTCCTGCCATGGGTCAGGCCCCTCCTGCAACCAATGAGCAGAAACAGCGGAAAAGCAAGACCAATGGAGCTGAAAATGAAAC___GTTAACGTTAGCAGAATACCATGAACAAGAAGAAATCTTCAAACTCAGATTAGGTCATCTTAAAAAG___GAGGAAGCAGAGATCCAGGCAGAGCTGGAG TSLILFEEVDVIFDEDAGFLNAIKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSL|atgkdkftegrdrkttenvskaetschgsgpscnq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12919 ATAD5::TLK2 ENSG00000176208.9::ENSG00000146872.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2276 TRUE 876 ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30878096:+ chr17:29158984-29222887:+ chr17:29205114:+ TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62573215:+ chr17:60536019-60692842:+ chr17:60650576:+ chr17:30883846,chr17:30884308,chr17:30883844 chr17:62570895,chr17:62570892,chr17:62570890 NA NA chr17:29210864,chr17:29211326,chr17:29210862 chr17:60648256,chr17:60648253,chr17:60648251 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)|Protein_kinase_domain(100%) AAA(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 5 49 160 ENST00000321990.5 ENST00000582809.5 downstream upstream none CCCAGCAGAAAAAATGCAACATCTCTTATTCTTTTTGAGGAG___GTTGATGTAATTTTTGATGAAGATGCTGGGTTTTTGAATGCAATCAAAACATTCATGGCAACAACTAAACGACCTGTAATCCTTACTACAAGTG|GCAACAGGAAAGGATAAATTCACAGAGGGAAGAGATAGAAAGACAACGGAAAATGTTAGCAAAGCGGAAACCTCCTGCCATGGGTCAGGCCCCTCCTGCAACCAATGAGCAGAAACAGCGGAAAAGCAAGA...TGAAAC___GTTAACGTTAGCAGAATACCATGAACAAGAAGAAATCTTCAAACTCAGATTAGGTCATCTTAAAAAG___GAGGAAGCAGAGATCCAGGCAGAGCTGG PSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKRPVILTTS|gnrkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12920 PVT1::LINC00536 ENSG00000249859.14::ENSG00000249917.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2277 TRUE 877 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070272:+ chr8:128806772-129199347:+ chr8:129082518:+ LINC00536 ENSG00000249917.3 lncRNA - - chr8:115950511-116325062:- chr8:115977436:- chr8:116962736-117337300:- chr8:116989661:- chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084583,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580 chr8:116037575,chr8:116037576,chr8:116037577,chr8:116037542,chr8:116037579,chr8:116037566,chr8:116037580,chr8:116037569,chr8:116037583,chr8:116037584,chr8:116037534,chr8:116037581,chr8:116037550,chr8:116037586,chr8:116037588,chr8:116037570,chr8:116037590,chr8:116037591,chr8:116037549,chr8:116037595,chr8:116037596,chr8:116037561,chr8:116037598,chr8:116037599,chr8:116037600,chr8:116037601,chr8:116037602,chr8:116037603,chr8:116037592,chr8:116037604,chr8:116037605,chr8:116037533,chr8:116037537,chr8:116037540,chr8:116037541,chr8:116037543,chr8:116037544,chr8:116037545,chr8:116037546,chr8:116037548,chr8:116037551,chr8:116037552,chr8:116037553,chr8:116037555,chr8:116037556,chr8:116037557,chr8:116037559,chr8:116037560,chr8:116037562,chr8:116037563,chr8:116037551,chr8:116037567,chr8:116037568,chr8:116037571,chr8:116037574 NA NA chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096829,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826 chr8:117049800,chr8:117049801,chr8:117049802,chr8:117049767,chr8:117049804,chr8:117049791,chr8:117049805,chr8:117049794,chr8:117049808,chr8:117049809,chr8:117049759,chr8:117049806,chr8:117049775,chr8:117049811,chr8:117049813,chr8:117049795,chr8:117049815,chr8:117049816,chr8:117049774,chr8:117049820,chr8:117049821,chr8:117049786,chr8:117049823,chr8:117049824,chr8:117049825,chr8:117049826,chr8:117049827,chr8:117049828,chr8:117049817,chr8:117049829,chr8:117049830,chr8:117049758,chr8:117049762,chr8:117049765,chr8:117049766,chr8:117049768,chr8:117049769,chr8:117049770,chr8:117049771,chr8:117049773,chr8:117049776,chr8:117049777,chr8:117049778,chr8:117049780,chr8:117049781,chr8:117049782,chr8:117049784,chr8:117049785,chr8:117049787,chr8:117049788,chr8:117049776,chr8:117049792,chr8:117049793,chr8:117049796,chr8:117049799 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 4 6 14 50 40 ENST00000667305.1 ENST00000505156.2 downstream downstream none AAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG___AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAGGAGCTGCATCTACCCTGCCCATGCCATAGATCCTGCCCTGTTTGCTTCTCCTGTTGCTGCTAGTGGACATGAG|GCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAG___GTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12921 PVT1::LINC00536 ENSG00000249859.14::ENSG00000249917.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2277 TRUE 877 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070361:+ chr8:128806772-129199347:+ chr8:129082607:+ LINC00536 ENSG00000249917.3 lncRNA - - chr8:115950511-116325062:- chr8:115977436:- chr8:116962736-117337300:- chr8:116989661:- chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084583,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580 chr8:116037575,chr8:116037576,chr8:116037577,chr8:116037542,chr8:116037579,chr8:116037566,chr8:116037580,chr8:116037569,chr8:116037583,chr8:116037584,chr8:116037534,chr8:116037581,chr8:116037550,chr8:116037586,chr8:116037588,chr8:116037570,chr8:116037590,chr8:116037591,chr8:116037549,chr8:116037595,chr8:116037596,chr8:116037561,chr8:116037598,chr8:116037599,chr8:116037600,chr8:116037601,chr8:116037602,chr8:116037603,chr8:116037592,chr8:116037604,chr8:116037605,chr8:116037533,chr8:116037537,chr8:116037540,chr8:116037541,chr8:116037543,chr8:116037544,chr8:116037545,chr8:116037546,chr8:116037548,chr8:116037551,chr8:116037552,chr8:116037553,chr8:116037555,chr8:116037556,chr8:116037557,chr8:116037559,chr8:116037560,chr8:116037562,chr8:116037563,chr8:116037551,chr8:116037567,chr8:116037568,chr8:116037571,chr8:116037574 NA NA chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096829,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826 chr8:117049800,chr8:117049801,chr8:117049802,chr8:117049767,chr8:117049804,chr8:117049791,chr8:117049805,chr8:117049794,chr8:117049808,chr8:117049809,chr8:117049759,chr8:117049806,chr8:117049775,chr8:117049811,chr8:117049813,chr8:117049795,chr8:117049815,chr8:117049816,chr8:117049774,chr8:117049820,chr8:117049821,chr8:117049786,chr8:117049823,chr8:117049824,chr8:117049825,chr8:117049826,chr8:117049827,chr8:117049828,chr8:117049817,chr8:117049829,chr8:117049830,chr8:117049758,chr8:117049762,chr8:117049765,chr8:117049766,chr8:117049768,chr8:117049769,chr8:117049770,chr8:117049771,chr8:117049773,chr8:117049776,chr8:117049777,chr8:117049778,chr8:117049780,chr8:117049781,chr8:117049782,chr8:117049784,chr8:117049785,chr8:117049787,chr8:117049788,chr8:117049776,chr8:117049792,chr8:117049793,chr8:117049796,chr8:117049799 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 1 16 10 40 ENST00000652816.1 ENST00000505156.2 downstream downstream none AAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG___AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAGGAGCTGCATCTACCCTGCCCATGCCATAGATCCTGCCCTGTTTGCTTCTCCTGTTGCTGCTAGTGGACATGAGGTAACCACAGCCTAGTTCTGTGATAAGCTCTTCACACCTGTACCCATATGGACTGTGGGAGAGTTTCTCTGATATGGACTGTGATGCGG|GCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAG___GTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12922 PVT1::LINC00536 ENSG00000249859.14::ENSG00000249917.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2277 TRUE 877 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ LINC00536 ENSG00000249917.3 lncRNA - - chr8:115950511-116325062:- chr8:115977436:- chr8:116962736-117337300:- chr8:116989661:- chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084583,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580 chr8:116037575,chr8:116037576,chr8:116037577,chr8:116037542,chr8:116037579,chr8:116037566,chr8:116037580,chr8:116037569,chr8:116037583,chr8:116037584,chr8:116037534,chr8:116037581,chr8:116037550,chr8:116037586,chr8:116037588,chr8:116037570,chr8:116037590,chr8:116037591,chr8:116037549,chr8:116037595,chr8:116037596,chr8:116037561,chr8:116037598,chr8:116037599,chr8:116037600,chr8:116037601,chr8:116037602,chr8:116037603,chr8:116037592,chr8:116037604,chr8:116037605,chr8:116037533,chr8:116037537,chr8:116037540,chr8:116037541,chr8:116037543,chr8:116037544,chr8:116037545,chr8:116037546,chr8:116037548,chr8:116037551,chr8:116037552,chr8:116037553,chr8:116037555,chr8:116037556,chr8:116037557,chr8:116037559,chr8:116037560,chr8:116037562,chr8:116037563,chr8:116037551,chr8:116037567,chr8:116037568,chr8:116037571,chr8:116037574 NA NA chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096829,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826 chr8:117049800,chr8:117049801,chr8:117049802,chr8:117049767,chr8:117049804,chr8:117049791,chr8:117049805,chr8:117049794,chr8:117049808,chr8:117049809,chr8:117049759,chr8:117049806,chr8:117049775,chr8:117049811,chr8:117049813,chr8:117049795,chr8:117049815,chr8:117049816,chr8:117049774,chr8:117049820,chr8:117049821,chr8:117049786,chr8:117049823,chr8:117049824,chr8:117049825,chr8:117049826,chr8:117049827,chr8:117049828,chr8:117049817,chr8:117049829,chr8:117049830,chr8:117049758,chr8:117049762,chr8:117049765,chr8:117049766,chr8:117049768,chr8:117049769,chr8:117049770,chr8:117049771,chr8:117049773,chr8:117049776,chr8:117049777,chr8:117049778,chr8:117049780,chr8:117049781,chr8:117049782,chr8:117049784,chr8:117049785,chr8:117049787,chr8:117049788,chr8:117049776,chr8:117049792,chr8:117049793,chr8:117049796,chr8:117049799 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 3 4 10 46 40 ENST00000667305.1 ENST00000505156.2 downstream downstream low_entropy(1) GACAGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|GCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAG___GTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCTGCCAGCTTCAAACAGTGCTTCTGATAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12923 PVT1::LINC00536 ENSG00000249859.14::ENSG00000249917.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2277 TRUE 877 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128032272:+ chr8:128806772-129199347:+ chr8:129044518:+ LINC00536 ENSG00000249917.3 lncRNA - - chr8:115950511-116325062:- chr8:115977436:- chr8:116962736-117337300:- chr8:116989661:- chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084583,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580 chr8:116037575,chr8:116037576,chr8:116037577,chr8:116037542,chr8:116037579,chr8:116037566,chr8:116037580,chr8:116037569,chr8:116037583,chr8:116037584,chr8:116037534,chr8:116037581,chr8:116037550,chr8:116037586,chr8:116037588,chr8:116037570,chr8:116037590,chr8:116037591,chr8:116037549,chr8:116037595,chr8:116037596,chr8:116037561,chr8:116037598,chr8:116037599,chr8:116037600,chr8:116037601,chr8:116037602,chr8:116037603,chr8:116037592,chr8:116037604,chr8:116037605,chr8:116037533,chr8:116037537,chr8:116037540,chr8:116037541,chr8:116037543,chr8:116037544,chr8:116037545,chr8:116037546,chr8:116037548,chr8:116037551,chr8:116037552,chr8:116037553,chr8:116037555,chr8:116037556,chr8:116037557,chr8:116037559,chr8:116037560,chr8:116037562,chr8:116037563,chr8:116037551,chr8:116037567,chr8:116037568,chr8:116037571,chr8:116037574 NA NA chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096829,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826 chr8:117049800,chr8:117049801,chr8:117049802,chr8:117049767,chr8:117049804,chr8:117049791,chr8:117049805,chr8:117049794,chr8:117049808,chr8:117049809,chr8:117049759,chr8:117049806,chr8:117049775,chr8:117049811,chr8:117049813,chr8:117049795,chr8:117049815,chr8:117049816,chr8:117049774,chr8:117049820,chr8:117049821,chr8:117049786,chr8:117049823,chr8:117049824,chr8:117049825,chr8:117049826,chr8:117049827,chr8:117049828,chr8:117049817,chr8:117049829,chr8:117049830,chr8:117049758,chr8:117049762,chr8:117049765,chr8:117049766,chr8:117049768,chr8:117049769,chr8:117049770,chr8:117049771,chr8:117049773,chr8:117049776,chr8:117049777,chr8:117049778,chr8:117049780,chr8:117049781,chr8:117049782,chr8:117049784,chr8:117049785,chr8:117049787,chr8:117049788,chr8:117049776,chr8:117049792,chr8:117049793,chr8:117049796,chr8:117049799 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 10 4 40 ENST00000656999.1 ENST00000505156.2 downstream downstream duplicates(1) GAGCTGAGGAGGAGGACATGGGTGTAGAAACGGTCGCAGCCCACACTGCTGTGCCTACAGCTCTGGATCCTGACTGT|GCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAG___GTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCTGCCAGCTTCAAACAGTGCTTCTGATAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12924 PVT1::LINC00536 ENSG00000249859.14::ENSG00000249917.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2277 TRUE 877 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ LINC00536 ENSG00000249917.3 lncRNA - - chr8:115950511-116325062:- chr8:115977436:- chr8:116962736-117337300:- chr8:116989661:- chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084583,chr8:128084580,chr8:128084580,chr8:128084580,chr8:128084580 chr8:116037575,chr8:116037576,chr8:116037577,chr8:116037542,chr8:116037579,chr8:116037566,chr8:116037580,chr8:116037569,chr8:116037583,chr8:116037584,chr8:116037534,chr8:116037581,chr8:116037550,chr8:116037586,chr8:116037588,chr8:116037570,chr8:116037590,chr8:116037591,chr8:116037549,chr8:116037595,chr8:116037596,chr8:116037561,chr8:116037598,chr8:116037599,chr8:116037600,chr8:116037601,chr8:116037602,chr8:116037603,chr8:116037592,chr8:116037604,chr8:116037605,chr8:116037533,chr8:116037537,chr8:116037540,chr8:116037541,chr8:116037543,chr8:116037544,chr8:116037545,chr8:116037546,chr8:116037548,chr8:116037551,chr8:116037552,chr8:116037553,chr8:116037555,chr8:116037556,chr8:116037557,chr8:116037559,chr8:116037560,chr8:116037562,chr8:116037563,chr8:116037551,chr8:116037567,chr8:116037568,chr8:116037571,chr8:116037574 NA NA chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096829,chr8:129096826,chr8:129096826,chr8:129096826,chr8:129096826 chr8:117049800,chr8:117049801,chr8:117049802,chr8:117049767,chr8:117049804,chr8:117049791,chr8:117049805,chr8:117049794,chr8:117049808,chr8:117049809,chr8:117049759,chr8:117049806,chr8:117049775,chr8:117049811,chr8:117049813,chr8:117049795,chr8:117049815,chr8:117049816,chr8:117049774,chr8:117049820,chr8:117049821,chr8:117049786,chr8:117049823,chr8:117049824,chr8:117049825,chr8:117049826,chr8:117049827,chr8:117049828,chr8:117049817,chr8:117049829,chr8:117049830,chr8:117049758,chr8:117049762,chr8:117049765,chr8:117049766,chr8:117049768,chr8:117049769,chr8:117049770,chr8:117049771,chr8:117049773,chr8:117049776,chr8:117049777,chr8:117049778,chr8:117049780,chr8:117049781,chr8:117049782,chr8:117049784,chr8:117049785,chr8:117049787,chr8:117049788,chr8:117049776,chr8:117049792,chr8:117049793,chr8:117049796,chr8:117049799 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 8 54 40 ENST00000667305.1 ENST00000505156.2 downstream downstream mismappers(1),mismatches(1) GCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG___AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|GCACATTGAAGAATCAGAAGATGTTTTCCCCCTGTGTTTTTGATGGAAGGAAGAAAGCAGGATTTGCCAGGATGCATTCTGCATCCAAGAACATGAACGGAAATGAGCCACAGAAAATCTGGAGTGATGGCAGCTGTTGTGAGAGGTGGCAATGAAATGGATTTCTCAGACACAGAGATGTGGTCTCCCACCAG___GTCCCATTTCAGTGTATGGTTTCTTGGATTTCTCTGCCAGCTTCAAACAGTGCTTCTGATAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12925 STAU1::TOX2 ENSG00000124214.21::ENSG00000124191.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49135833:- chr20:47729876-47804904:- chr20:47752370:- TOX2 ENSG00000124191.18 protein_coding + - chr20:43914852-44069616:+ chr20:43924291:- chr20:42543492-42698256:+ chr20:42552931:- chr20:49127633,chr20:49127281,chr20:49127636 chr20:43924781,chr20:43924781,chr20:43924781 NA NA chr20:47744170,chr20:47743818,chr20:47744173 chr20:42553421,chr20:42553421,chr20:42553421 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Double-stranded_RNA_binding_motif(39%)| dsrm(16%)| 9 7 8 1288 30 ENST00000371828.7 unknown upstream downstream mismatches(1) TGCAGAATGAGCCCCTGCCAGAGAGGCTGGAG___GTGAATGGAAGAGAATCCGAAGAAGAAAATCTCAATAAATCTGAAATAAGTCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCTGTGAATTTCGAG|AGCAGATGACACATCTCTCTCACTTCATGAGACAAAGAAGAACCTTGAGCAAGTGAGTGACCgTCACTAAAAGTCATCCACATGCTGGCCCTTGATTTCCTGGGAAATCTCCCTGAGATGGTCACAGTGGTACTCTCCAGCCCTCTTCCATATGCTCATCCCCCAACCTCAGGAATATCAGCGGCTGGGCTTGCAGCTCGCCCTTCAATGGGACTGCCC QNEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFE|sr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12926 MPP7::ODAD2 ENSG00000150054.19::ENSG00000169126.16 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MPP7 ENSG00000150054.19 protein_coding - - chr10:28050993-28334486:- chr10:28089671:- chr10:28339922-28623415:- chr10:28378600:- ODAD2 ENSG00000169126.16 protein_coding - + chr10:27775186-27999079:- chr10:27863216:+ chr10:28064115-28288008:- chr10:28152145:+ chr10:28073406,chr10:28073411 chr10:27852148,chr10:27852145 NA NA chr10:28362335,chr10:28362340 chr10:28141077,chr10:28141074 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Guanylate_kinase(3%),L27_domain(100%),PDZ_domain(100%),SH3_domain(100%)| Guanylate_kin(0%),L27(100%),PDZ(100%),PDZ_6(100%),SH3_1(100%),SH3_2(100%)| 9 6 7 132 20 ENST00000683449.1 unknown upstream upstream duplicates(1) CAAAGCATTTCCAGGAAAG___GAGATTGGCTTTGAGACGACCAGAAATATTGGTTCAGCCCCTGAAAGTTTCCAACAGGAAATCAT___CTGGTTTTAGAAgAAGTTTTCGTCTTAGTAGAAAAGATAAGAAAACAAATAAATCCATGTATGAATGCAAGAAGAGTGATCAGTACGACACAGCTGACGTACCCACATACGAAGAAGTGACACCGTATCGGCGACAAACTAATGAAAAATACAGACTCGTTGTCTTGGTTG|GCACACCACAGCCTTCTTGCCCTTACAAACCATAGGCAGCACCTCAGCACCACATCTGGGGGCCACTGTGAACAGTGAAATAACCAACAAAAAGCACAAAAATCCAAAAATTATGGCACTAAATGGACTGCAAAATGGACACTTGCTTACAG...TGCATTGGACGACTCAAATTTTTCACTTCTCTGTGCATGTCCAAGAATGACCATATTGAGTAGGGGGTTACAAGTAAATTTGAGCAAGTAGGCAAATTCCC KHFQERRLALRRPEILVQPLKVSNRKSSGFRrSFRLSRKDKKTNKSMYECKKSDQYDTADVPTYEEVTPYRRQTNEKYRLVVLV|gtpqpscpykp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-8086 chr10:28289258-28289350:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12927 TRIO::FBXL7 ENSG00000038382.23::ENSG00000183580.10 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1292 FALSE NA FALSE NA TRIO ENSG00000038382.23 protein_coding + + chr5:14143342-14532128:+ chr5:14420021:+ chr5:14143451-14532237:+ chr5:14420130:+ FBXL7 ENSG00000183580.10 protein_coding + + chr5:15500180-15939795:+ chr5:15615983:+ chr5:15500289-15939904:+ chr5:15616092:+ chr5:14441371,chr5:14441367 chr5:15603665,chr5:15603661 NA NA chr5:14441480,chr5:14441476 chr5:15603774,chr5:15603770 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none CRAL/TRIO_domain(100%),PH_domain(48%),RhoGEF_domain(49%),SH3-RhoGEF_linking_unstructured_region(7%),SH3_domain(100%),Spectrin_repeat(100%)|F-box-like(100%),Leucine_Rich_repeat(100%) CRAL_TRIO(100%),CRAL_TRIO_2(100%),PH(75%),RhoGEF(45%),SH3-RhoG_link(0%),SH3_1(100%),Spectrin(100%)|F-box(100%),F-box-like(100%),LRR_6(100%) 4 5 9 40 16 ENST00000344204.9 ENST00000504595.2 downstream upstream mismatches(1) CTGGACAGCGATAAG___CTCTCTGGTGGCTGTGAGCTGACAGTGGTGATCCATGACTTCACCGCTTGCAACAGCAACGAGCTGACCATCCGACGGGGCCAGACCGTGGAAGTTCTGGAGCGGCCGCATGACAAGCCTGACTGGTGTCTGGTGCGGACAACTGACCGCTCCCCAGCGGCAGAAGGCCTGGTCCCCTGTGGTTCACTGTGCATCGCCCACTCCAGAAGTAGCATGGAAATGGAGGGCATCTTCAACCACAAAG|GCAAAGGCAGCTCGAGCATCTCATCTGACGTGAGTTCAAGTACAGATCACACGCCCACTAAAGCCCAGAAGAATGTGGCTACCAGCGAAG___ACTCCGACCTGAGCATGCGCACACTGAGCACGCCCAGCCCAGCCCTGATATGTCCACCGAATCTCCCAGGATTTCAGAATGGAAGGGGCTCGTCCACCTCCTCGTCCTCCATCACCGGGGAGACGGTGGCCATGGTGCACTCCCCGCCCCCGACCCGCCTCACAC LDSDKLSGGCELTVVIHDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHK|gKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-887 chr5:15935182-15935260:+ FALSE NA NA TRUE TRUE Triple functional domain protein CAMK Trio O75962 FALSE NA NA NA NA NA NA TRUE Lung,Soft_tissue no_match TRUE Lung squamous cell carcinoma LUNG no_match 14391099 FALSE 15616092 TRUE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12928 RARA::PKIA ENSG00000131759.18::ENSG00000171033.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1293 TRUE 2278 TRUE 878 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ PKIA ENSG00000171033.13 protein_coding + + chr8:78516340-78605267:+ chr8:78572811:+ chr8:79428575-79517502:+ chr8:79485046:+ chr17:40318133,chr17:40318136,chr17:40318133,chr17:40318135 chr8:78563195,chr8:78563190,chr8:78563190,chr8:78563192 NA NA chr17:38474385,chr17:38474388,chr17:38474385,chr17:38474387 chr8:79475430,chr8:79475425,chr8:79475425,chr8:79475427 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |cAMP-dependent_protein_kinase_inhibitor(100%) |PKI(100%) 1 15 2 29 27 ENST00000254066.10 ENST00000396418.7 downstream upstream none GCAGCAGCCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG|TTTCCTGACTTTCTGAGAAGCCCTGGTTTCCCCAAAGAAGTGATTTCTGATAGAAATCTGAAGGTCATCTCCAAGAAAAAAGAGATCTAGTATAGTCAATGAATTAAAGACAAGAAGGTTTCCAATCAG___TCCCTGCTATGTGGATATTTGGTAGCAATGACTGATGTGGAAACTACATATGCAGATTTTATTGCTTCAGGAAGAACAGGTAGAAGAAATGCAATACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTGAAATTAGCAGGTCTTGATATCAACAAGACAG___AAGGTGAAGAAGATGCACAACGAAGTTCTACAGAACAAAGTGGGGAAGCCCAGGGAGAAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 12929 RARA::PKIA ENSG00000131759.18::ENSG00000171033.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2278 TRUE 878 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ PKIA ENSG00000171033.13 protein_coding + + chr8:78516340-78605267:+ chr8:78598358:+ chr8:79428575-79517502:+ chr8:79510593:+ chr17:40318133,chr17:40318136,chr17:40318133,chr17:40318135 chr8:78563195,chr8:78563190,chr8:78563190,chr8:78563192 NA NA chr17:38474385,chr17:38474388,chr17:38474385,chr17:38474387 chr8:79475430,chr8:79475425,chr8:79475425,chr8:79475427 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |cAMP-dependent_protein_kinase_inhibitor(100%) |PKI(100%) 0 2 2 29 33 ENST00000254066.10 ENST00000396418.7 downstream upstream none GTGCCTCTTGCAGCAGCCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG|TCCCTGCTATGTGGATATTTGGTAGCAATGACTGATGTGGAAACTACATATGCAGATTTTATTGCTTCAGGAAGAACAGGTAGAAGAAATGCAATACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTGAAATTAGCAGGTCTTGATATCAACAAGACAG___AAGGTGAAGAAGATGCACAACGAAGTTCTACAGAACAAAGTGGGGAAGCCCAGGGAGAAGCAGCAAAATCTGAAAGCTAACACCCCACTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 12930 SLC45A4::LINC00824 ENSG00000022567.10::ENSG00000254275.6 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2279 TRUE 879 SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141253989:- chr8:142217265-142318404:- chr8:142264088:- LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:141246208,chr8:141246210 chr8:128438542,chr8:128438541 NA NA chr8:142256307,chr8:142256309 chr8:129450788,chr8:129450787 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none MFS/sugar_transport_protein(0%)| MFS_2(0%)| 4 10 1 37 22 ENST00000517878.6 ENST00000520766.5 upstream downstream duplicates(1),mismatches(2) CCATGCGCCTGTGGGTGATGCACGGGGCGGTGATGTTTGGCAGGGAGTTCTGTTACGCCATGGAAACCGCTCTGGTCACACCAATACTGTTGCAGATTG|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCA?CCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAGGTGACTCAGCTCTGGCTTTTCAGCAATGCC MRLWVMHGAVMFGREFCYAMETALVTPILLQI|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12931 SLC45A4::LINC00824 ENSG00000022567.10::ENSG00000254275.6 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2279 TRUE 879 SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141308096:- chr8:142217265-142318404:- chr8:142318195:- LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:141246208,chr8:141246210 chr8:128438542,chr8:128438541 NA NA chr8:142256307,chr8:142256309 chr8:129450788,chr8:129450787 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 1 22 ENST00000517878.6 ENST00000520766.5 upstream downstream none CGGCCGCCCCGCCGCCCCCGCGGCCCCGGCCGGAGGAGACAG|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCAG[c]CCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12932 PBRM1::WDR82 ENSG00000163939.19::ENSG00000164091.12 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1294 FALSE NA FALSE NA PBRM1 ENSG00000163939.19 protein_coding - - chr3:52545352-52685917:- chr3:52668498:- chr3:52579368-52719933:- chr3:52702514:- WDR82 ENSG00000164091.12 protein_coding - - chr3:52254434-52288020:- chr3:52270809:- chr3:52288450-52322036:- chr3:52304825:- chr3:52663419,chr3:52663425 chr3:52271717,chr3:52271720 NA NA chr3:52697435,chr3:52697441 chr3:52305733,chr3:52305736 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Bromodomain(14%)|WD_domain__G-beta_repeat(68%) Bromodomain(19%)|WD40(98%) 4 7 4 73 127 ENST00000707071.1 ENST00000296490.8 upstream downstream low_entropy(1) GTTGGATTCCATGGGTTCCAAGAGAAGAAGAGCTACCTCCCCTTCCAGCAGTGTCAGCGGGGACTTTGATGATGGGCACCATTCTGTGTCAACACCAGGCC...CGAGACTATAAGGATGAACAGGGCAGACTTCTCTGTGAGCTCTTCATTAGGGCACCAAAGCGAAG___AAATCAACCAGACTATTATGAAGTGGTTTCTCAGCC...ATTGACTTGATGAAAATCCAACAGAAACTAAAAATGGAAGAGTATGATGATGTTAATTTGCTGACTGCTGACTTCCAGCTTCTTTTTAACAATGCAAAGTCCTATTATAAG|ACCAAAGAGAACCCTGTACAGTAAGAAATATGGTGTGGACCTCATCAGATACACTCATGCAGCAAACACAGTTGTTTACAGCTCTAACAAAATAGACG___ATACTATTCGTTACTTGTCCTTGCATGACAACAAATACATCAGATACTTTCCTGGACATAGCAAAAG___GGTGGTGGCCTTGTCCATGTCACCTGTGGATGACACTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGG IDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYK|tkenpvq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-let-7g chr3:52268278-52268361:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE polybromo 1 1 Yes clear cell renal carcinoma, breast epithelial TSG missense, nonsense, frameshift, splice_site, large_deletion, other FALSE NA NA NA NA NA NA NA NA NA 12933 VSTM2L::CTNNBL1 ENSG00000132821.12::ENSG00000132792.20 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1295 TRUE 2280 TRUE 880 VSTM2L ENSG00000132821.12 protein_coding + + chr20:37903111-37945350:+ chr20:37933589:+ chr20:36531513-36573752:+ chr20:36561991:+ CTNNBL1 ENSG00000132792.20 protein_coding + + chr20:37693955-37872129:+ chr20:37859899:+ chr20:36322357-36500531:+ chr20:36488301:+ chr20:37937226,chr20:37937223 chr20:37847329,chr20:37847323 NA NA chr20:36565628,chr20:36565625 chr20:36475731,chr20:36475725 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Immunoglobulin_V-set_domain(65%)| I-set(15%),Ig_3(15%),V-set(15%),ig(15%)| 6 4 5 554 653 ENST00000373461.9 ENST00000621317.4 downstream upstream duplicates(1),mismatches(1) CCGCGGCAGCGGCTCCCCCTCCTACTCGCTGGAGATCCAGTGGTGGTATGTACGGAGCCACCGGGACTGGACCGACAAGCAGGCGTGGGCCTCGAACCAG___CTAAAAGCATCTCAGCAGGAAGACGCAGGGAAGGAGGCAACCAAAATAAGT|GACATGGTCCGGCGAGGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTGCTACATCATGGCCGAGATCTGCAATGCCAATGTCCCCCAG___ATTCGCCAGAGGGTTCACCAGATCCTAAACATGCGAGGAAGCTCCATCAAAATTGTCAGGCATATCATCAAGG___AGTATGCAGAGAACATCGG RGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKIS|DMVRRGEIIDNDTEEEFYLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Pheochromocytoma and Paraganglioma ADRENAL_GLAND no_match 36561991 TRUE 36468504 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12934 VSTM2L::CTNNBL1 ENSG00000132821.12::ENSG00000132792.20 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2280 TRUE 880 VSTM2L ENSG00000132821.12 protein_coding + + chr20:37903111-37945350:+ chr20:37931804:+ chr20:36531513-36573752:+ chr20:36560206:+ CTNNBL1 ENSG00000132792.20 protein_coding + + chr20:37693955-37872129:+ chr20:37859899:+ chr20:36322357-36500531:+ chr20:36488301:+ chr20:37937226,chr20:37937223 chr20:37847329,chr20:37847323 NA NA chr20:36565628,chr20:36565625 chr20:36475731,chr20:36475725 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Immunoglobulin_V-set_domain(49%)| I-set(1%),Ig_3(1%),V-set(1%),ig(1%)| 2 3 5 710 653 ENST00000373461.9 ENST00000621317.4 downstream upstream duplicates(1),mismatches(1) ACCACGTCTCCGGCCACG___CCCTGTTCACAGAGACACCCCATGACATGACAGCACGGACGGGCGAGGACGTGGAGATGGCCTGCTCCTTCCGCGGCAGCGGCTCCCCCTCCTACTCGCTGGAGATCCAGTGGTGGTATGTACGGAGCCACCGGGACTGGACCGACAAGCAGGCGTGGGCCTCGAACCAG|GACATGGTCCGGCGAGGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTGCTACATCATGGCCGAGATCTGCAATGCCAATGTCCCCCAG___ATTCGCCAGAGGGTTCACCAGATCCTAAACATGCGAGGAAGCTCCATCAAAATTGTCAGGCATATCATCAAGG___AGTATGCAGAGAACATCGG HVSGHALFTETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQ|DMVRRGEIIDNDTEEEFYLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Pheochromocytoma and Paraganglioma ADRENAL_GLAND no_match 36561991 FALSE 36468504 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12938 NEMF::SNTB1 ENSG00000165525.18::ENSG00000172164.15 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NEMF ENSG00000165525.18 protein_coding - + chr14:49782083-49852821:- chr14:49782594:+ chr14:50248801-50319539:- chr14:50249312:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120548958:- chr8:121547985-121825513:- chr8:121561198:- NA NA NA NA NA NA NA NA antisense sense unknown 3'UTR CDS/splice-site translocation/3'-3' high none |PH_domain(32%) |MTBP_C(100%),PH(0%) 4 4 2 709 417 unknown ENST00000395601.7 downstream downstream duplicates(2) TGTGCCAGCGATGAAGGAGAAGTAATTGTTTTTGGTGGATGTGCCAACAACTTGCTTGTCCATCACAGAGCT___GCACACAGTAATGAAATACTAATATTTTCAGTTCAACCAAAATCTCTTGTACG|GCTGGTCCATTCAGGTCCAGGAAAGGGATCACCCCAGGCTGGTGTGGATCTGTCCTTTGCAACGCGAACTGGTACCAGGCAAGGGATTGAAACACATCTCTTCAGAGCAGAGACCAGCAGGGACCTCTCCCACTGGACAAGGAGCATAGTACAGGGTTGCCACAATTCTGCTGAACTCATTGCTGAAATCAGCACTG___CTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAG...AAAAGCTCAAAATGTCTTCAGATGATGGAATCAGGATGCTGTATTTAGATTTTGGAGaCAAAGATGGAGAGATT___CAACTGGACCTTCATTCCTGCCCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12939 MTSS1::ENSG00000253238 ENSG00000170873.19::ENSG00000253238.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2281 TRUE 881 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585087:- chr8:125563025-125740714:- chr8:125597328:- ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80288817:+ chr8:81178142-81396716:+ chr8:81201052:+ chr8:124578466,chr8:124578468 chr8:80273562,chr8:80273560 NA NA chr8:125590707,chr8:125590709 chr8:81185797,chr8:81185795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IRSp53/MIM_homology_domain(61%)| IMD(88%)| 1 4 3 39 20 ENST00000518547.6 ENST00000656157.1 upstream upstream none CCCACTTCAAGAACAGATGGAAGAATGGAAGAAAGTGGCCAACCAGCTGGATAAAGACCACGCAAAAG___AATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG|GTCCATACCCCTGAACTTCTCAAATATTTCCAATGCTCATCACTGGGTCTTTTGCATGGTCAAAAGGGTTGCAGGTGATTCTTCTGTGTTGTAAAGTTGAAGAGCAGCTTAATCCACACTTCCTTTTTGGTCTCACTTCTCCCCTTTGTTCCGGTCAAACCCTGACTGCTTCAAAAGGAAAACTGA___TGGAGTCACAATCAAAGCCAAAAGAATGAAAAGTCA PLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKK|gpyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12940 MTSS1::ENSG00000253238 ENSG00000170873.19::ENSG00000253238.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2281 TRUE 881 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124580551:- chr8:125563025-125740714:- chr8:125592792:- ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80288817:+ chr8:81178142-81396716:+ chr8:81201052:+ chr8:124578466,chr8:124578468 chr8:80273562,chr8:80273560 NA NA chr8:125590707,chr8:125590709 chr8:81185797,chr8:81185795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IRSp53/MIM_homology_domain(62%)| IMD(91%)| 4 0 3 18 20 ENST00000325064.9 ENST00000656157.1 upstream upstream mismatches(1) GAAGCATTGAAGCCAAGCTGAGGCAGTTTTCGAG___CGCTTTAATTGATTGTCTGATAAACCCACTTCAAGAACAGATGGAAGAATGGAAGAAAGTGGCCAACCAGCTGG...AGAATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG___TGGACACTCTTG|GTCCATACCCCTGAACTTCTCAAATATTTCCAATGCTCATCACTGGGTCTTTTGCATGGTCAAAAGGGTTGCAGGTGATTCTTCTGTGTTGTAAAGTTGAAGAGCAGCTTAA EYKKARQEIKKKSSDTLKLQKKAKKVDTL|gpyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12941 MTSS1::ENSG00000253238 ENSG00000170873.19::ENSG00000253238.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2281 TRUE 881 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124580551:- chr8:125563025-125740714:- chr8:125592792:- ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80285687:+ chr8:81178142-81396716:+ chr8:81197922:+ chr8:124578466,chr8:124578468 chr8:80273562,chr8:80273560 NA NA chr8:125590707,chr8:125590709 chr8:81185797,chr8:81185795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IRSp53/MIM_homology_domain(62%)| IMD(91%)| 1 1 3 18 3 ENST00000325064.9 ENST00000662273.1 upstream upstream none GCCAAGCTGAGGCAGTTTTCGAG___CGCTTTAATTGATTGTCTGATAAACCCACTTCAAGAACAGATGGAAGAATGGAAGAAAGTGGCCAACCAGCTGGATAA...AGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG___TGGACACTCTTG|AGTATTTCTCTGTTGCCTGGGCTGGAATGCAGTGGCGCCATCATAACTCACTGCAGCCTCAACCACCTGGACTCAAG...ACCCCTGAACTTCTCAAATATTTCCAATGCTCATCACTGGGTCTTTTGCATGGTCAAAAGGGTTGCAGGTGATTCTTCTGTGTTGTAAAGTTGAAGAGCAG KSSDTLKLQKKAKKVDTL|eyfsvawagmqwrhhnslqpqppgl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12942 MTSS1::ENSG00000253238 ENSG00000170873.19::ENSG00000253238.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2281 TRUE 881 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585087:- chr8:125563025-125740714:- chr8:125597328:- ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80285687:+ chr8:81178142-81396716:+ chr8:81197922:+ chr8:124578466,chr8:124578468 chr8:80273562,chr8:80273560 NA NA chr8:125590707,chr8:125590709 chr8:81185797,chr8:81185795 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IRSp53/MIM_homology_domain(61%)| IMD(88%)| 0 1 3 39 3 ENST00000518547.6 ENST00000662273.1 upstream upstream none CCCACTTCAAGAACAGATGGAAGAATGGAAGAAAGTGGCCAACCAGCTGGATAAAGACCACGCAAAAG___AATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG|AGTATTTCTCTGTTGCCTGGGCTGGAATGCAGTGGCGCCATCATAACTCACTGCAGCCTCAACCACCTGGACTCAAGCTATCCTCTCA PLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKK|eyfsvawagmqwrhhnslqpqppglklss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12943 MTSS1::ENSG00000253238 ENSG00000170873.19::ENSG00000253238.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2281 TRUE 881 MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585088:- chr8:125563025-125740714:- chr8:125597329:- ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80285681:+ chr8:81178142-81396716:+ chr8:81197916:+ chr8:124578466,chr8:124578468 chr8:80273562,chr8:80273560 NA NA chr8:125590707,chr8:125590709 chr8:81185797,chr8:81185795 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none IRSp53/MIM_homology_domain(60%)| IMD(88%)| 0 0 3 39 3 ENST00000518547.6 ENST00000666374.1 upstream upstream mismappers(1) CCCACTTCAAGAACAGATGGAAGAATGGAAGAAAGTGGCCAACCAGCTGGATAAAGACCACGCAAAAG___AATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAA|AGACAGAGTATTTCTCTGTTGCCTGGGCTGGAATGCAGTGGCGCC PLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKK|rqsisllpglecsg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12944 SAMD12::EXT1 ENSG00000177570.15::ENSG00000182197.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SAMD12 ENSG00000177570.15 protein_coding - - chr8:118189455-118622112:- chr8:118621804:- chr8:119201694-119634351:- chr8:119634043:- EXT1 ENSG00000182197.13 protein_coding - + chr8:117794490-118111826:- chr8:117909789:+ chr8:118806729-119124065:- chr8:118922028:+ chr8:118581182,chr8:118581185 chr8:117904125,chr8:117904122 NA NA chr8:119593421,chr8:119593424 chr8:118916364,chr8:118916361 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 1 2 3 272 9 ENST00000409003.5 unknown upstream upstream mismappers(8),mismatches(2) ATTTAGGCGAAAGCGAGAGGAAGGGGGGAGCGCGGGGCAGGAGGAGTACCTCGGCCAAGAAAATTATGCATGCGTTAGGGAAGCTCTGAGAGAATGGCTGTGGAAG|ATGGAGTCTCGCTCTGTCACCCAGATGGGAGTACAATGGTGCAATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACTGTTGTGCACTGCCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAAACTGGCCTTGAACTCCTGACTTCAAGT MAVE|dgvslchpdgstmvqsqltatsasqvqaillpqppk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12948 ENSG00000260170::AKAP13 ENSG00000260170.1::ENSG00000170776.22 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000260170 ENSG00000260170.1 protein_coding + + chr15:45587351-45676314:+ chr15:45587525:+ chr15:45879549-45968512:+ chr15:45879723:+ AKAP13 ENSG00000170776.22 protein_coding + + chr15:85380571-85749358:+ chr15:85639374:+ chr15:85923802-86292589:+ chr15:86182605:+ chr15:45592683,chr15:45592677 chr15:85597593,chr15:85597584 NA NA chr15:45884881,chr15:45884875 chr15:86140824,chr15:86140815 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |PH_domain(100%),RhoGEF_domain(100%) |C1_1(100%),PH(100%),PH_16(100%),RhoGEF(100%) 1 1 3 130 92 ENST00000564080.1 ENST00000394518.7 downstream upstream duplicates(1),mismatches(1) CTTGCTTCTGACGAGCCACACGTTTGCTTCTTCCCTGTGTTCCCAGCTGGAGGGACATGAGTGTCCCTGGGCCGTCGTCTCCGGACGGGGCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACGCCTG|ATAAACCGAGAAAACTGGTGTACAATAGAGCCATGCCCTGATGCAGCATCTCTTCTGGCTTCCAAGCAGAGCCCAG___AATGTGAGAACTTCCTGGATGTTGGACTGGGCAGAGAGTGTACCTCAAAACAAGGTGTACTTAAAAGAGAATCTGGGAGTGATTCTGACCTCTTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12949 BLOC1S6::AKAP13 ENSG00000104164.12::ENSG00000170776.22 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2283 TRUE 882 BLOC1S6 ENSG00000104164.12 protein_coding + + chr15:45587214-45615945:+ chr15:45587525:+ chr15:45879412-45908143:+ chr15:45879723:+ AKAP13 ENSG00000170776.22 protein_coding + + chr15:85380571-85749358:+ chr15:85639374:+ chr15:85923802-86292589:+ chr15:86182605:+ chr15:45592683,chr15:45592677 chr15:85597593,chr15:85597584 NA NA chr15:45884881,chr15:45884875 chr15:86140824,chr15:86140815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |PH_domain(100%),RhoGEF_domain(100%) |C1_1(100%),PH(100%),PH_16(100%),RhoGEF(100%) 1 1 3 130 92 ENST00000220531.9 ENST00000394518.7 downstream upstream duplicates(1),mismatches(1) CTTGCTTCTGACGAGCCACACGTTTGCTTCTTCCCTGTGTTCCCAGCTGGAGGGACATGAGTGTCCCTGGGCCGTCGTCTCCGGACGGGGCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACGCCTG|ATAAACCGAGAAAACTGGTGTACAATAGAGCCATGCCCTGATGCAGCATCTCTTCTGGCTTCCAAGCAGAGCCCAG___AATGTGAGAACTTCCTGGATGTTGGACTGGGCAGAGAGTGTACCTCAAAACAAGGTGTACTTAAAAGAGAATCTGGGAGTGATTCTGACCTCTTTCAC MSVPGPSSPDGALTRPPYCLEAGEPTP|dkprklvynramp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12950 BLOC1S6::AKAP13 ENSG00000104164.12::ENSG00000170776.22 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2283 TRUE 882 BLOC1S6 ENSG00000104164.12 protein_coding + + chr15:45587214-45615945:+ chr15:45592276:+ chr15:45879412-45908143:+ chr15:45884474:+ AKAP13 ENSG00000170776.22 protein_coding + + chr15:85380571-85749358:+ chr15:85639374:+ chr15:85923802-86292589:+ chr15:86182605:+ chr15:45592683,chr15:45592677 chr15:85597593,chr15:85597584 NA NA chr15:45884881,chr15:45884875 chr15:86140824,chr15:86140815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Snapin/Pallidin(27%)|PH_domain(100%),RhoGEF_domain(100%) Snapin_Pallidin(0%)|C1_1(100%),PH(100%),PH_16(100%),RhoGEF(100%) 0 1 4 100 92 ENST00000568597.5 ENST00000394518.7 downstream upstream duplicates(1),mismatches(2) GTTTTTTCGCCCCCGTCACTTCCGGGgGCGACAATCTCTTCTGTCCGGCCAGCCGCTGGAGTCGTTAGGcGCCGCCTTGCTTCTGACGAGaCACACGTTTG...CATGAGTGTCCCTGGGCCGTCGTCTCCGGACGGGGCCCTGACACGGCCACCCTACTGCCTGGAGGCCGGGGAGCCGACGCCTG___GTTTAAGTGACACTTCTC...GAAGGATTGCTTTCTCATTATTTGCCAGATCTGCAGAGATCAAAACAAGCCCTCCAGGAACTCAC|ATAAACCGAGAAAACTGGTGTACAATAGAGCCATGCCCTGATGCAGCATCTCTTCTGGCTTCCAAGCAGAGCCCAG___AATGTGAGAACTTCCTGGATGTTGGACTGGGCAGAGAGTGTACCTCAAAACAAGGTGTACTTAAAAGAGAATCTGGGAGTGATTCTGACCTCTTTCAC EGLLSHYLPDLQRSKQALQELt|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12951 TRPS1::DEPTOR ENSG00000104447.13::ENSG00000155792.10 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRPS1 ENSG00000104447.13 protein_coding - - chr8:115408496-115809673:- chr8:115676463:- chr8:116420724-116821899:- chr8:116688690:- DEPTOR ENSG00000155792.10 protein_coding + + chr8:119873717-120050918:+ chr8:120001525:+ chr8:120885957-121063157:+ chr8:121013764:+ chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671369,chr8:115671373 chr8:119968379,chr8:119968378,chr8:119968413,chr8:119968377,chr8:119968375,chr8:119968376,chr8:119968374,chr8:119968373,chr8:119968400,chr8:119968371,chr8:119968370,chr8:119968381,chr8:119968420,chr8:119968439,chr8:119968436,chr8:119968435,chr8:119968434,chr8:119968432,chr8:119968430,chr8:119968429,chr8:119968428,chr8:119968426,chr8:119968425,chr8:119968424,chr8:119968423,chr8:119968418,chr8:119968417,chr8:119968416,chr8:119968412,chr8:119968411,chr8:119968410,chr8:119968408,chr8:119968407,chr8:119968406,chr8:119968404,chr8:119968403,chr8:119968402,chr8:119968401,chr8:119968409,chr8:119968398,chr8:119968397,chr8:119968395,chr8:119968394,chr8:119968393,chr8:119968392,chr8:119968391,chr8:119968390,chr8:119968414,chr8:119968388,chr8:119968389,chr8:119968387,chr8:119968380,chr8:119967635 NA NA chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683596,chr8:116683600 chr8:120980619,chr8:120980618,chr8:120980653,chr8:120980617,chr8:120980615,chr8:120980616,chr8:120980614,chr8:120980613,chr8:120980640,chr8:120980611,chr8:120980610,chr8:120980621,chr8:120980660,chr8:120980679,chr8:120980676,chr8:120980675,chr8:120980674,chr8:120980672,chr8:120980670,chr8:120980669,chr8:120980668,chr8:120980666,chr8:120980665,chr8:120980664,chr8:120980663,chr8:120980658,chr8:120980657,chr8:120980656,chr8:120980652,chr8:120980651,chr8:120980650,chr8:120980648,chr8:120980647,chr8:120980646,chr8:120980644,chr8:120980643,chr8:120980642,chr8:120980641,chr8:120980649,chr8:120980638,chr8:120980637,chr8:120980635,chr8:120980634,chr8:120980633,chr8:120980632,chr8:120980631,chr8:120980630,chr8:120980654,chr8:120980628,chr8:120980629,chr8:120980627,chr8:120980620,chr8:120979875 NA NA sense sense unknown intron CDS/splice-site inversion high none |Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(11%) |DEP(0%) 2 1 2 4 29 unknown ENST00000286234.6 upstream upstream none CAGAGTCTAGACTACAGCAAATTGGAACAATTGCCCAGGGCTCTGCTCTGCTGGGGAAACCCAGCAGCTGGGACTGCTACAGTAGATTTGTGAATACTTGCTACAGAGGACAGAGCAGGGATATGG|TGTCCAgCAAGCACCCATTTGTGGACAGCAATCTTCTCTACCAGTTCAGAATGAACTTCCGGCGGAGGCGAAGACTGATGGAGCTGCTCAATGAAAAGTCCCCCTCCTCCCAGGAAACTCATGACAGTCCCTTCTGCCTGAGGAAGCAGAGCCATGACAATCGGAAATCTACCAGCTTTATGTCAG___TGAGCCCCAGCAAGGAGATCAAGATCGTGTCTGCAGTGAGGAGAAGCAGCATGAGCAGCTGTGGCAGCAGCGGCTACTTCAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 116680772|116681572 FALSE|FALSE 121061815|121061815 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12952 RPTOR::RNF213 ENSG00000141564.16::ENSG00000173821.20 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPTOR ENSG00000141564.16 protein_coding + + chr17:80544819-80966371:+ chr17:80791509:+ chr17:78518619-78940171:+ chr17:78765309:+ RNF213 ENSG00000173821.20 protein_coding + + chr17:80260852-80398794:+ chr17:80325030:+ chr17:78234651-78372594:+ chr17:78298830:+ chr17:80815399,chr17:80815391 chr17:80324616,chr17:80324605 NA NA chr17:78789199,chr17:78789191 chr17:78298416,chr17:78298405 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Raptor_N-terminal_CASPase_like_domain(100%)|Zinc_finger__C3HC4_type_(RING_finger)(100%) Raptor_N(100%)|zf-C3HC4(100%) 0 2 3 67 224 ENST00000306801.8 ENST00000582970.6 downstream upstream mismatches(1) CCGAGCTGCTGCCCATGATCCCCGACCTCCCGGCTGACCTATTCACCTCCTGCCTCACCACCCCCATCAAGATCGCCCTGCGCTG___GTTTTGCATGCAGAAATGTGTCAGTCTGGTGCCTGGCGTCACACTGGATTTGATAGAAAA|TCTCAGACCAGTATCCTTCAGGGGTTCTCTTACTCTGATTTGCGGAAATTTGGCATCGTCTTGTCTGCTGTGATCACTAAGTCCTGGCCTAGGACCGCGGACAACTTCGATGACATTTTAAAGCATCTGCTCACGTTGGCAGATGTCAAGCACGTCTTCAGATTGTGTG___GAACCGACGAGAAAATACTAGCAAATGTCACAGAGGATGCCAAGAGGCTGATAGCTGTTGCCGACTCTGTGTTGACGAAAGTTGTTGGTGACCTCCTAAGTGGCACGATTTTAGTTGGACAACTGGAGCTGATTATAAAGCACAAGAATCAG ELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLIEn|lrpvsfrgsltlicgnlasscll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 78617610 FALSE 78341548 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ring finger protein 213 1 Yes ALCL leukaemia_lymphoma fusion translocation 12953 IQSEC1::ENSG00000287042 ENSG00000144711.17::ENSG00000287042.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IQSEC1 ENSG00000144711.17 protein_coding - - chr3:12897043-13283281:- chr3:13022033:- chr3:12938542-13324781:- chr3:13063533:- ENSG00000287042 ENSG00000287042.3 lncRNA + + chr3:15860112-16137529:+ chr3:16137391:+ chr3:15901619-16179036:+ chr3:16178898:+ chr3:12980561,chr3:12980563 chr3:15971099,chr3:15971097 NA NA chr3:13022061,chr3:13022063 chr3:16012606,chr3:16012604 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 3 1 0 57 16 ENST00000646269.1 ENST00000702609.1 upstream upstream none GGAGGAGACTCTGGGTGGTGGGGCAGTGGTGGTGGGCCCCTTGGCCACTCGCTCCTCCACCGAGCCAGGCATGAAGGGGgATGGCAGTGCCGTGTGGAGCCTTATGTGGAAGTACTGCATCTCTGTGAGGACACTCAG|CACGTGAGGACACAAGAAGAAGGCATCTGTTTACACACCAGGAGGAGAGACCTCACAAGAACCCAATCATGATGGCACTTTGATCTTAGACCGCCAGCCTCCAGAACA MKGdGSAVWSLMWKYCISVRTLs|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12957 ABCB9::ACOT13 ENSG00000150967.19::ENSG00000112304.11 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABCB9 ENSG00000150967.19 protein_coding - - chr12:122920951-122981649:- chr12:122959635:- chr12:123405498-123466196:- chr12:123444182:- ACOT13 ENSG00000112304.11 protein_coding + - chr6:24667035-24705065:+ chr6:24670770:- chr6:24667263-24705293:+ chr6:24670998:- chr12:122952360,chr12:122952364 chr6:24684332,chr6:24684333 NA NA chr12:123436907,chr12:123436911 chr6:24684560,chr6:24684561 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none ABC_transporter_transmembrane_region(4%)| ABC_membrane(0%)| 1 2 0 98 11 ENST00000542678.5 unknown upstream downstream none CCTTCCTGCTCTGGTGGCTGCTGTCCACCGTGCGGCCAGGCACCCAGGCCCTGGAGCCAGGGGCGGCCACCGAGGCTGAGGGCTTCCCTGGGAGCGGCCGG...CTGCTCTCCTACACCAAGCCCGACGTGGCCTTCCTCGTGGCCGCCTCCTTCTTCCTCATCGTGGCAGCTCTGG|AGCCTTGAAACTTTTCTTTTGAGCTATTGACAGCTTTTAACAATTTAGTATACTCCAATCAACAAAATTTGGAGCATATTTGTTTCTCTCTACCTGATTTCTCCAGAATTTGTAAACTATTT___GAGTCACTGAAAACAGC LLSYTKPDVAFLVAASFFLIVAAL|ep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12981 CSE1L::ENSG00000290421 ENSG00000124207.17::ENSG00000290421.1 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000290421 ENSG00000290421.1 lncRNA + + chr20:49318475-49441654:+ chr20:49370502:+ chr20:47935012-48058191:+ chr20:47987039:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Cse1(42%),Importin-beta_N-terminal_domain(100%)| Cse1(33%),IBN_N(100%)| 5 7 8 1676 53 ENST00000262982.3 ENST00000637091.1 downstream upstream duplicates(3),mismatches(2) TGGAAACTTGGATGAATAATTTTCATACTCTCTTAACATTGGATAATAAGCTTTTACAAACTGAT___GATGAAGAGGAAGCCGGCTTATTGGAGCTCTTAAAATCCCAGATTTGTGATAATGCCGCACTCTATGCACAAAAGTACGATGAAGAATTCCAGCGATACCTGCCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAACGGGTCAAGAGGTTAAATATGATTTG|ATAGCATCAGCTCTAAAAATATCTGAATTGGAAATCACAACTATTTACTTTTATCAAAAAGCATTTGTTTTTTTCCCTGAATTTTCACATTTGTGCTGATGGTGGACATTAATGGTGATGAAAACAAAGAAGAGACATGTGAGATGGTCGGCGGAGAACTGTCCCACAGTCATTCCTCAAGAGGCCCCCAGCTCAGACTGCGTGTTCAGCAAAGTGTTTTGGGAGTGCTGCTTCCTCTGCCTGGCACGGGATGACCTCACACTCTCCCTGCCCCTAAGTCCCTTTGCAGTTGCTGCGCGAATtCTCTG ETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDL|iasalkiseleittiyfyqkafvffpefshlc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12982 NEMF::CEP112 ENSG00000165525.18::ENSG00000154240.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEMF ENSG00000165525.18 protein_coding - + chr14:49782083-49852821:- chr14:49782594:+ chr14:50248801-50319539:- chr14:50249312:+ CEP112 ENSG00000154240.18 protein_coding - + chr17:65635537-66192133:- chr17:66046678:+ chr17:63631655-64188251:- chr17:64042796:+ chr14:49789865,chr14:49789865 chr17:66046149,chr17:66046146 NA NA chr14:50256583,chr14:50256583 chr17:64042267,chr17:64042264 NA NA antisense antisense unknown 3'UTR intron translocation medium none none none 4 4 6 709 22 unknown unknown downstream upstream mismatches(1) AATTTAATCATCCATATACCGAAAAACCAAG___GTTATGGCACACAGCTTGTGCCAGCGATGAAGGAGAAGTAATTGTTTTTGGTGGATGTGCCAACAACTTGCTTGTCCATCACAGAGCT___GCACACAGTAATGAAATACTAATATTTTCAGTTCAACCAAAATCTCTTGTACG|TGTCTTTGCAGATGTAAGCAAGTTAAAATGATATCATACTGGATTAGGGTGGGCCCTAAATCCAACAACTTCTGaCATTATGAGAAGGCCATGTGAAGACATCGAGACAGAAATACACAATGAAAATGCAAATGTTGACAG[ag]CAGGACTGCCATGCTGCAGCTGTAAGCCAGAAAATGGCGAGGACCACCCGCAGCCACCAGAAGCTCCACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12985 CSE1L::KCNB1 ENSG00000124207.17::ENSG00000158445.10 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ KCNB1 ENSG00000158445.10 protein_coding - + chr20:49293394-49484297:- chr20:49369126:+ chr20:47909931-48100834:- chr20:47985663:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR deletion/read-through/5'-5' medium none Cse1(42%),Importin-beta_N-terminal_domain(100%)| Cse1(33%),IBN_N(100%)| 2 2 8 1676 25 ENST00000262982.3 unknown downstream upstream mismatches(2) AGGATCTCCCTGAATTTTTTGAAGATAATATGGAAACTTGGATGAATAATTTTCATACTCTCTTAACATTGGATAATAAGCTTTTACAAACTGAT___GATGAAGAGGAAGCCGGCTTATTGGAGCTCTTAAAATCCCAGATTTGTGATAATGCCGCACTCTATGCACAAAAGTACGATGAAGAATTCCAGCGATACCTGCCTCGTTTTGTTACAGCCATCTGGAATTTACTAGTTACAACGGGTCAAGAGGTTAAATATGATTTG|AAACATGGATCTTATTAGGAGAAAGGGCAGAGACGAGGCTACAGTTACCAAGACACATGGAGAAGCTGGA...AGAAATGGCCTCCTCAGGATTTTGTTGTTTTTCCTTCTTACTCTTCTTCCTTCTTGATCCCCAGTCCTTTGGAGAAAGGGACTTCACGGGAACAAATGTTC DLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDL|khgsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 12998 ENSG00000253238::PVT1 ENSG00000253238.3::ENSG00000249859.14 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000253238 ENSG00000253238.3 lncRNA + + chr8:80265907-80484481:+ chr8:80289002:+ chr8:81178142-81396716:+ chr8:81201237:+ PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127914597:- chr8:128806772-129199347:+ chr8:128926843:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none none 1 0 1 13 2 ENST00000656157.1 unknown downstream downstream none GATATTTCACAGTTCTCCAAGTAGAACAG___GTCCATACCCCTGAACTTCTCAAATATTTCCAATGCTCATCACTGGGTCTTTTGCATGGTCAAAAGGGTTGCAGGTGATTCTTCTGTGTTGTAAAGTTGAAGAGCAGCTTAATCCACACTTCCTTTTTGGTCTCACTTCTCCCCTTTGTTCCGGTCAAACCCTGACTGCTTCAAAAGGAAAACTGA|TTGAATACTGTTTGCTATTCTTCCGCG...CACCAAACTGTCTTCCACAGAGACTGTATCATCTTACATTCCTACCAGCAATGTACAAGGGTTCCAATTTCTCTACATCCTCACCAACACTTGCTATTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13019 CSNK2A1::PREX1 ENSG00000101266.19::ENSG00000124126.14 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSNK2A1 ENSG00000101266.19 protein_coding - - chr20:472498-543835:- chr20:527933:- chr20:453142-524479:- chr20:508577:- PREX1 ENSG00000124126.14 protein_coding - - chr20:48624252-48827999:- chr20:48632639:- chr20:47240790-47444536:- chr20:47249177:- chr20:525477,chr20:525472 chr20:48634465,chr20:48634465 NA NA chr20:506121,chr20:506116 chr20:47251003,chr20:47251003 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 1 308 937 ENST00000217244.9 ENST00000371941.4 upstream downstream none CTATCAAGGCTTGTCAAGCAGTGTGCTCATCACATGGTAAATCATGCAGCGTGGAACCTCATAAAATCTCCAAGAAACATCATTCACCCATACTGACTAGTTTCACATCTCTTTG|ACACCAACGTCTTCTACCACATTGAGGGCAGCCGGCAGGCGCTGAAGGTCATCTTCTACCTCGACAGCTACCACTTCTCCAAGCTGCCCTCCCGCCTGGAGGGcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Casein kinase II subunit alpha CMGC CK2 P68400 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13021 AMZ2::PCAT1 ENSG00000196704.14::ENSG00000253438.5 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AMZ2 ENSG00000196704.14 protein_coding + + chr17:68205481-68257712:+ chr17:68251178:+ chr17:66201622-66253853:+ chr17:66247319:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127345751:+ chr8:127568568-128431295:+ chr8:128357997:+ chr17:68253909,chr17:68253910,chr17:68253907 chr8:127341045,chr8:127341043,chr8:127341043 NA NA chr17:66250050,chr17:66250051,chr17:66250048 chr8:128353290,chr8:128353288,chr8:128353288 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 1 0 0 747 94 ENST00000674770.2 ENST00000644842.1 downstream upstream none CACACACAACCTACAAATTCATGCAG___GGGACATCCTGAAGTTCTTGAAAAAGAAGAAACCTGAAGATGCCTTCTGTGTTGTGGGAATAACAATGATTGATCTTTACCCAAGAGACTCGTGGAATTTTGTCTTTGGACAGGCCTCTTTGACAGATG|CATTAACTGTAATGTTAAAAGGAGGGACTTACCCAGAAATAAC THNLQIHAGDILKFLKKKKPEDAFCVVGITMIDLYPRDSWNFVFGQASLTD|altvmlkggtypei NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13022 TBC1D31::SLC30A8 ENSG00000156787.17::ENSG00000164756.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123144855:+ chr8:124054208-124164393:+ chr8:124157095:+ SLC30A8 ENSG00000164756.13 protein_coding + + chr8:116950273-117176714:+ chr8:117152944:+ chr8:117962512-118188953:+ chr8:118165183:+ chr8:123147425,chr8:123147436,chr8:123151675,chr8:123151691,chr8:123147432 chr8:116961837,chr8:116961837,chr8:116957558,chr8:116957558,chr8:116961830 NA NA chr8:124159665,chr8:124159676,chr8:124163915,chr8:124163931,chr8:124159672 chr8:117974076,chr8:117974076,chr8:117969797,chr8:117969797,chr8:117974069 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Rab-GTPase-TBC_domain(100%)|Cation_efflux_family(92%) DER1(100%),RabGAP-TBC(100%),WD40(100%)|Cation_efflux(64%) 1 0 0 370 7 ENST00000287380.6 ENST00000427715.2 downstream upstream none GAAGCCAAGAAG___TGGAAGGAcGCTGAAGGAAAAGAGTTCCGTTTGAGATCAGCAAAGAAgGCTTCTGCTCTTTCAGATGCGTCTAGAAAGTGGTTTTTAAAGCAAGAGATAAATGCGGCTGTAGAACATGCTGAAAATCCATGTCATAAAG|GTGGGCACATTGCTGGGAGTCTTGCTGTTGTCAC EAKKWKdAEGKEFRLRSAKKASALSDASRKWFLKQEINAAVEHAENPCHK|gGHIAGSLAVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13031 TRRAP::PPP1R3A ENSG00000196367.15::ENSG00000154415.8 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:98921953:+ chr7:98475556-98648454:+ chr7:98519576:+ PPP1R3A ENSG00000154415.8 protein_coding - + chr7:113876777-114075920:- chr7:113970718:+ chr7:113516832-113715975:- chr7:113610773:+ chr7:98923536,chr7:98923835,chr7:98923537 chr7:113940769,chr7:113940816,chr7:113940767 NA NA chr7:98521159,chr7:98521458,chr7:98521160 chr7:113580824,chr7:113580871,chr7:113580822 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 19 27 67 259 76 ENST00000355540.7 unknown downstream upstream duplicates(7),low_entropy(1),mismatches(10) CTGTGTGTGGACAACCTGCAGCCCGACTTCCTCTACGACCACATCCAGCCGGTGCGCGCAGAGCTCATGCAG___GCTCTGTGGCGCACCTTACGCAACCCTGCTGACAGCATCTCCCACGTGGCCTACCGTGTGCTCGGTAAGTTTGGCGGCAGTAACAGGAAGATGCTGAAGGAGTCGCAGAAGCTGCACTACGTTGTGACCGAGGTTCAGGGCCCCAGCATCACTGTGGAGTTTTCCGACTGCAAAGCTTCTCTCCAGCTCCCCATGGAGAAG|AGGTCCGCAACTTTTTTGGCACCAGAGACCAGTTCCGTGGAAGACAATTTTTCCATATATGGACAAGGGACAAGATG___TTACTTTATGCAGCAATATCATCAACAAATAGTGGTGAGCCTTGAATGAAGAGACTCCAAACGGATGCAAGACAGTTTTCCTCCCTTTAAG LCVDNLQPDFLYDHIQPVRAELMQALWRTLRNPADSISHVAYRVLGKFGGSNRKMLKESQKLHYVVTEVQGPSITVEFSDCKASLQLPMEK|rsatflapetssvednfsiygqgtrcyfmqqyhqqivvsle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3609 chr7:98881650-98881729:+ FALSE NA NA FALSE NA NA TRUE FALSE Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13032 ST7::BAIAP2L1 ENSG00000004866.22::ENSG00000006453.14 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1300 TRUE 2298 TRUE 883 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117138532:+ chr7:116593292-116870230:+ chr7:116778586:+ BAIAP2L1 ENSG00000006453.14 protein_coding - - chr7:98291650-98401090:- chr7:98355128:- chr7:97920962-98030402:- chr7:97984440:- chr7:117152043 chr7:98357462 NA NA chr7:116792097 chr7:97986774 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ST7_protein(54%)|IRSp53/MIM_homology_domain(87%),Variant_SH3_domain(100%) ST7(56%),TPR_6(0%)|DUF2367(100%),IMD(48%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 23 28 61 442 149 ENST00000393446.6 ENST00000005260.9 downstream downstream duplicates(9),low_entropy(3),mismatches(6) CAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATA___GACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGAT|CTATGATCCTGGCAGGAAAAGCCTACTACGATGGAGTGGCCAAGATCGGTGAGATTGCCACTGGGTCCCCCGTGTCAACTGAACTGG___GACATGTCCTCATAGAGATTTCAAGTACCCACAAGAAACTCAACGAGAGTCTTGATGAAAAT___TTTAAAAAATTCCACAAAGAGATTATCCATGAGCTGGAGAAGAAGATAGAACTTGACGTGAAATATATGAAC___GCAACTCTAAAAAGATACC TTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRD|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6132 chr7:117020211-117020319:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13033 ST7::BAIAP2L1 ENSG00000004866.22::ENSG00000006453.14 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2298 TRUE 883 ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117138532:+ chr7:116593292-116870230:+ chr7:116778586:+ BAIAP2L1 ENSG00000006453.14 protein_coding - - chr7:98291650-98401090:- chr7:98320298:- chr7:97920962-98030402:- chr7:97949610:- chr7:117152043 chr7:98357462 NA NA chr7:116792097 chr7:97986774 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ST7_protein(54%)|IRSp53/MIM_homology_domain(74%),Variant_SH3_domain(100%) ST7(56%),TPR_6(0%)|DUF2367(100%),IMD(9%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 1 35 442 229 ENST00000393446.6 ENST00000005260.9 downstream downstream duplicates(2),mismatches(3) AAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATA___GACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGAT|GACATGTCCTCATAGAGATTTCAAGTACCCACAAGAAACTCAACGAGAGTCTTGATGAAAAT___TTTAAAAAATTCCACAAAGAGATTATCCATGAGCTGGAGAAGAAGATAGAACTTGACGTGAAATATATGAAC___GCAACTCTAAAAAGATACCAAACAGAACACAAGA KLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRD|dmss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6132 chr7:117020211-117020319:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13034 FHOD3::DLGAP1 ENSG00000134775.16::ENSG00000170579.19 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1301 TRUE 2299 TRUE 884 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36372744:+ chr18:33877676-34360183:+ chr18:33952707:+ DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:3582248:- chr18:3496030-4455307:- chr18:3582246:- chr18:36402152,chr18:36402148,chr18:36402148 chr18:3692309,chr18:3692313,chr18:3692279 NA NA chr18:33982115,chr18:33982111,chr18:33982111 chr18:3692309,chr18:3692313,chr18:3692279 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Formin_N-terminal_GTPase-binding_domain(100%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) Formin_GBD_N(36%)|GKAP(100%) 20 29 22 72 122 ENST00000590592.6 ENST00000315677.8 downstream downstream duplicates(5),low_entropy(1),mismappers(3),mismatches(3) CTGCAGCTCTCTCACAATGGCGCCTACCTGGATTTGGAGGCCACCCTGGCAGAGCAGCGGGATGAGTTGGAAGGCTTCCAGGATGACGCCGG___GCGGGGCAAGAAGCACAGCATCATCCTAAGGACGCAGCTGTCTGTGAGGGTCCATGCCTGCATCG|TGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGACGGACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTATGAAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCATGGCCCTGCCA LQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACI|vSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALTAAIEAANAQIHGPA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13035 FHOD3::DLGAP1 ENSG00000134775.16::ENSG00000170579.19 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2299 TRUE 884 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36372744:+ chr18:33877676-34360183:+ chr18:33952707:+ DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:3656113:- chr18:3496030-4455307:- chr18:3656113:- chr18:36402152,chr18:36402148,chr18:36402148 chr18:3692309,chr18:3692313,chr18:3692279 NA NA chr18:33982115,chr18:33982111,chr18:33982111 chr18:3692309,chr18:3692313,chr18:3692279 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Formin_N-terminal_GTPase-binding_domain(100%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) Formin_GBD_N(36%)|GKAP(100%) 1 2 23 72 16 ENST00000590592.6 ENST00000515196.6 downstream downstream duplicates(2),mismatches(2) CTGCGGCCTCCCCTGCGCGCAGCTACCCGGGCGTCCCGGCCCGCGGCCCCGCTAACCCCGGGGCCCGCGCCCCCGCGGCAGGGATGCATCATGGCCACGCT...GTACTCTGCAGCTCTCTCACAATGGCGCCTACCTGGATTTGGAGGCCACCCTGGCAGAGCAGCGGGATGAGTTGGAAGGCTTCCAGGATGACGCCGG___GCGGGGCAAGAAGCACAGCATCATCCTAAGGACGCAGCTGTCTGTGAGGGTCCATGCCTGCATCG|GTGTCATAAAACTGAGTTCTGCAGTTGAAG___TGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAG TLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACI|gVIKLSSAVEVSSCITTYKKTPPPVPPRTTTKPFISITAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13036 FHOD3::DLGAP1 ENSG00000134775.16::ENSG00000170579.19 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2299 TRUE 884 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36355645:+ chr18:33877676-34360183:+ chr18:33935608:+ DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:3582248:- chr18:3496030-4455307:- chr18:3582246:- chr18:36402152,chr18:36402148,chr18:36402148 chr18:3692309,chr18:3692313,chr18:3692279 NA NA chr18:33982115,chr18:33982111,chr18:33982111 chr18:3692309,chr18:3692313,chr18:3692279 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Formin_N-terminal_GTPase-binding_domain(87%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) Formin_GBD_N(28%)|GKAP(100%) 0 3 17 90 122 ENST00000590592.6 ENST00000315677.8 downstream downstream duplicates(1),mismatches(2) GGCCGCCGCTGTTCACGTTCCGCGAGGACCTCGCGCTCGGCACCCAGCTGGCGGGGGTCCATAGGCTGCTGCAGGCGCCGCACAAG___CTGGATGACTGTACTCTGCAGCTCTCTCACAATGGCGCCTACCTGGATTTGGAGGCCACCCTGGCAGAGCAGCGGGATGAGTTGGAAGGCTTCCAGGATGACGCCGG|TGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGACGGACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTATGAAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCATGGCCCTGCCAGTCAACACATGGGCAATAACACT PPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAg|vilhyni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13037 MAFK::SLC29A4 ENSG00000198517.10::ENSG00000164638.11 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1302 FALSE NA FALSE NA MAFK ENSG00000198517.10 protein_coding + + chr7:1530702-1543043:+ chr7:1530898:+ chr7:1570338-1582679:+ chr7:1570534:+ SLC29A4 ENSG00000164638.11 protein_coding + + chr7:5274369-5306912:+ chr7:5290732:+ chr7:5314000-5346543:+ chr7:5330363:+ chr7:1536756,chr7:1536757,chr7:1536757,chr7:1536774 chr7:5290456,chr7:5290454,chr7:5290320,chr7:5290454 NA NA chr7:1576392,chr7:1576393,chr7:1576393,chr7:1576410 chr7:5330087,chr7:5330085,chr7:5329951,chr7:5330085 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Nucleoside_transporter(100%) |Nucleoside_tran(100%) 0 63 1 21 186 ENST00000343242.9 ENST00000406453.3 downstream upstream duplicates(8),mismatches(1) CGCGACAGTGAGCGCCGGCGCGAGGACAGCGCGTGCCCGCGAGGAGCCGCCGCGCGCCCGCGCCCTCCGCGCGACGCCAG|CATTGGACGAGCCAGTGCCCGATGACCGTTATCACGCCATCTACTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACTACCTGCATCACAAGTACCCAG___GGACCTCCATCGTGTTTGACATGAGCCTCACCTACATCTTGGTGGCACTGGCAGCTGTCCTCCTGAACAACGTCCTGGTGGAGAGACTGACCCTGCACACCAGGATCACCGCAG___CATCTGCGACGTGTGGCTGCAGCTCTTCTCTCGGGACCAGGCCTACGCCATCAACCTGGCCGCTGTGGGCACCGTGGCCTTCGGCTGCACAG___TGCAGCAATCCAGCTTCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13038 ZNF451::ENSG00000226733 ENSG00000112200.17::ENSG00000226733.4 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF451 ENSG00000112200.17 protein_coding + + chr6:57086844-57170305:+ chr6:57099141:+ chr6:56951642-57035103:+ chr6:56963939:+ ENSG00000226733 ENSG00000226733.4 lncRNA + - chr6:50093389-50181007:+ chr6:50100005:- chr6:50061102-50148720:+ chr6:50067718:- chr6:57105542 chr6:50105514 NA NA chr6:56970340 chr6:50073227 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 13 10 7 287 16 ENST00000357489.7 unknown downstream downstream duplicates(2),mismatches(3) GCGGGAAGGGGATTCGTGGCGACGGCGGCGGCAGGGACAGCAGGAGCAGTGGTGCTGTCAGCGCGGCCGTCGGAGACATGGGAGACCCGGGGTCGGAG___ATAATAGAATCTGTCCCTCCAGCTGGCCCTGAGGCATCTGAGTCAACAACGGATGAAAATGAAGACGACATTCAGTTTGTCAGT___GAAGGACCATTACGACCTGTTCTTGAATACATTGATCTGGTCAGCAGTGATGATGAAGAGCCTAGCACCTCTTATACTGAT|GTGGTTTGGAAGTTCTCCCCTGAAGCACAGCAAAGCACAGCATGTTCATGGCGGCTTGAATTTTATCTGCTCTGACCCGGATATCTG...___GAGTGTTCACAGCCTCTTCACCAAAAGTAAATTTCATCTCGAGAAACCACTTGCATTGCCCATCCATAAGAAGCAAC MGDPGSEIIESVPPAGPEASESTTDENEDDIQFVSEGPLRPVLEYIDLVSSDDEEPSTSYTD|vvwkfspeaqqstacswrlefyll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13039 MYO1D::ASIC2 ENSG00000176658.17::ENSG00000108684.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1303 FALSE NA FALSE NA MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32876778:- chr17:30819540-31204195:- chr17:31203796:- ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33025982:- chr17:31340105-32501983:- chr17:31353000:- chr17:32839285,chr17:32839289,chr17:32839289 chr17:33028270,chr17:33028210,chr17:33028271 NA NA chr17:31166303,chr17:31166307,chr17:31166307 chr17:31355288,chr17:31355228,chr17:31355289 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Myosin_head_(motor_domain)(2%)|Amiloride-sensitive_sodium_channel(20%) Myosin_head(0%)|ASC(0%) 5 13 7 86 26 ENST00000318217.10 ENST00000359872.6 upstream downstream duplicates(2),mismatches(1) CCGAGCTCATCGCGGGCCCACGGAGCGGCCCCGGAGGCCCGAGCGCGCCCACCTGAGCCCCCGCGCTGGCGCCATGGCGGAGCAGGAGAGCCTGGAATTCGGCAAGGCAGACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTTCATGGCCAACCTCAGGCTCAG|GGGATGCCCCTTTTTGTACCCCTGAGCAGCACAAGGAGTGTGCAGAGCCTGCCCTAG___GTCTGTTGGCGGAAAAGGACAGCAATTACTGTCTCTGCAGGACACCCTGCAACCTAACCCGCTACAACAAAGAGCTCTCCATGGTGAAGATCCCCAGCAAGACATCAGCCAAGTACCTTGAGAAG...TAACAAATCAGAAAAATATATCTC___AGAGAACATCCTTGTTCTGGATATATTTTTTGAAGCTCTCAATTATGAGACAATTGAACAGAAGAAGGCGTATGAAGTTGCTGCCTTACTTG___GTGATATTGGTG MAEQESLEFGKADFVLMDTVSMPEFMANLRLr|gcpflyp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13040 SLC29A4::TRRAP ENSG00000164638.11::ENSG00000196367.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1304 FALSE NA FALSE NA SLC29A4 ENSG00000164638.11 protein_coding + + chr7:5274369-5306912:+ chr7:5287985:+ chr7:5314000-5346543:+ chr7:5327616:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:98925112:+ chr7:98475556-98648454:+ chr7:98522735:+ chr7:5289733,chr7:5289731,chr7:5289731 chr7:98924844,chr7:98924516,chr7:98924832 NA NA chr7:5329364,chr7:5329362,chr7:5329362 chr7:98522467,chr7:98522139,chr7:98522455 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%) |FAT(100%),HECT(100%),PI3_PI4_kinase(100%),WW(100%) 2 10 5 28 107 ENST00000396872.8 ENST00000355540.7 downstream upstream duplicates(1),mismatches(2) AGGACCCCAGGCCGGGCCGGGCCGAG___AGGCTGCCATGGGCTCCGTGGGGAGCCAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCCGGGCGTAGTGATGAGCTTCACCTTCGACAGTCACCAGCTGGAGGAGGCGGCGGAGGCGGCTCAGGGCCAGGGCCTTAGGGCCAGGGGCGTCCCAGCTTTCACGGATACTA|GCCATTGAAACTGCTCTGGACTGCCTGAAAAGCGCCAACACTGAGCCCTACTACCGGAGGCAGGCGTGGGAAGTGATCAAATGCTTCCTGGTGGCCATGATGAGCCTGGAGGACAACAAGCACGCACTCTACCAGCTCCTGGCACACCCCAA___CTTTACAGAAAAGACCATCCCCAATGTTATCATCTCACATCGCTACAAAGCCCAGGACACTCCAGCCCGGAA...TGACAGGCGCCTTCATGTCTGCTGTCATTAAGGACCTGCGGCCCAGCGCCCTGCCCTTTGTCGCCAGCTTGATCCGCCACTATACGATGGTGGCAGTCGCC MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDT|sh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 13041 IMMP2L::BMT2 ENSG00000184903.10::ENSG00000164603.12 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1305 FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111487238:- chr7:110302700-111202573:- chr7:111127294:- BMT2 ENSG00000164603.12 protein_coding - - chr7:112819147-112939875:- chr7:112822373:- chr7:112459202-112579930:- chr7:112462428:- chr7:111477967,chr7:111477969 chr7:112823772,chr7:112823771 NA NA chr7:111118023,chr7:111118025 chr7:112463827,chr7:112463826 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Signal_peptidase__peptidase_S26_(48%)|25S_rRNA_(adenine(2142)-N(1))-methyltransferase__Bmt2_(100%) Peptidase_S26(5%)|Bmt2(100%) 7 4 5 251 41 ENST00000405709.7 ENST00000297145.9 upstream downstream mismappers(1),multimappers(1) CAAGAGTAGAAGGAGCATCGATGCAG___CCTTCTTTGAATCCTGGGGGGAGCCAGTCATCTGATGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACACCGTGGTGACATTGTATCATTGGT|AGTGTCTATAAATGTGATTTCCTGAACTTACAGCTTCAGCAACCACTCCAGCTTGCACAGGATGCTATAGATGCTTTTTTGAAGCAGCTGAAAAACCCTATTGATTCTCTTCCTGGAGAGCTTTTCCATGTGGTTGTTTTCTCTCTCCTTCTTTCTTATTTTCCATCTCCTTACCAGCGATGGATTTGCTGCAAGAAAGCCCAT RVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLv|vsinvis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13042 BAIAP2L1::SEMA3C ENSG00000006453.14::ENSG00000075223.14 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BAIAP2L1 ENSG00000006453.14 protein_coding - - chr7:98291650-98401090:- chr7:98362357:- chr7:97920962-98030402:- chr7:97991669:- SEMA3C ENSG00000075223.14 protein_coding - + chr7:80742538-80922359:- chr7:80877798:+ chr7:80371854-80551675:- chr7:80507114:+ chr7:98357031,chr7:98357429 chr7:80864408,chr7:80863926 NA NA chr7:97986343,chr7:97986741 chr7:80493724,chr7:80493242 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none IRSp53/MIM_homology_domain(12%)| IMD(43%)| 4 6 5 75 18 ENST00000005260.9 unknown upstream upstream mismappers(1) GTCCCGGGGGCCCGAGGAGGTGAACCGGCTCACGGAGAGCACCTACCGG___AATGTTATGGAACAGTTCAATCCTGGGCTGCGAAATTTAATAAACCTGGGGAAAAATTATGAGAAAGCTGTAAACG|AGTATAACTTTTGAAATGGAAGAGATAATTTCTGACGTGTGAGAATGGATGCACTAGAGTTGGAAGCAATATGACTGAAGAAGGCAAAACTCCTCCCAGGTGATTCCACATCATGAATTCCCACTCAAG___ACATTTGGAAGATAGCTCTTCTCTACATTTTCCCCCTCTTTT SRGPEEVNRLTESTYRNVMEQFNPGLRNLINLGKNYEKAVN|eynf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13043 PRKAG2::RNF32-DT ENSG00000106617.16::ENSG00000182648.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2300 TRUE 885 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151781152:- chr7:151253210-151574299:- chr7:151478238:- RNF32-DT ENSG00000182648.15 lncRNA - - chr7:156388922-156640654:- chr7:156441380:- chr7:156181616-156433348:- chr7:156234074:- chr7:151756623,chr7:151756626,chr7:151756626 chr7:156469515,chr7:156469515,chr7:156469476 NA NA chr7:151453709,chr7:151453712,chr7:151453712 chr7:156262209,chr7:156262209,chr7:156262170 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 6 3 3 15 8 ENST00000652321.2 ENST00000651649.1 upstream downstream duplicates(3) CGCGGTTATGGACACCAAGAAGAAAAAAGATGTTTCCAGCCCCGGCGGGAGCGGCGGCAAGAAAAATGCCAGCCAGAAGAGGCGTTCGCTGCGCGTGCACA...CCGGCCCTCCAGCCCCATGTCTGCACCTGTGAGGCCCAAGACCAGCCCCGGCTCTCCCAAAACCGTGTTCCCGTTCTCCTACCAGGAGTCCCCGCCACGCTCCCCTCGACGCATGAGCTTCAGTGGGATCTTCCGCTCCTCCTCCAAAGAGTCTTCCCCCAACTCCAACCCTGCTACCTCGCCCGGGGGCATCAGGTTTTTCTCCCGCTCCAGAAAAA|GTGTATTCAGGAGTCCATGCAGCAGGAAGTGGAGCCATCATCACAGGGTACGAAGGGAGGACAAGTGCAGTGTCGTGAGCATGTACAGAGGGAAGTTGACAGCGGGGAGAGGCTTTGCTGAGGAAGTGGCGTTTGGAAGAACGAGAATGAG___ATTCCTGACAAAGAATGGGTCTAGTCCAATAACTTCCTTgGGGCGCCTTGCTCTGCTGTGCTCAAATGACTGACCCCACGTTTCTTTAGGTGCACACGAGCTGTCTGTCACCTGTCTGCCATGTTGTGAGCTGC RPSSPMSAPVRPKTSPGSPKTVFPFSYQESPPRSPRRMSFSGIFRSSSKESSPNSNPATSPGGIRFFSRSRK|svfrspcsrkwshhhrvrredkcsvvsmyrgkltagrgfaeevafgrtrmrfltkngsspitslgrlallcsnd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13044 PRKAG2::RNF32-DT ENSG00000106617.16::ENSG00000182648.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2300 TRUE 885 PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151781152:- chr7:151253210-151574299:- chr7:151478238:- RNF32-DT ENSG00000182648.15 lncRNA - - chr7:156388922-156640654:- chr7:156445826:- chr7:156181616-156433348:- chr7:156238520:- chr7:151756623,chr7:151756626,chr7:151756626 chr7:156469515,chr7:156469515,chr7:156469476 NA NA chr7:151453709,chr7:151453712,chr7:151453712 chr7:156262209,chr7:156262209,chr7:156262170 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 0 3 15 0 ENST00000652321.2 ENST00000652322.1 upstream downstream duplicates(1) TTCCG___GACCTGAGCTCCTTCGCCATGCCGCTCCTGGACGGAGACCTGGAGGGTTCCGGAAAGCATTCtTCTCGAAAG___GTGGACAGCCCCTTCGGCCCGGGC...CCCATGTCTGCACCTGTGAGGCCCAAGACCAGCCCCGGCTCTCCCAAAACCGTGTTCCCGTTCTCCTACCAGGAGTCCCCGCCACGCTCCCCTCGACGCATGAGCTTCAGTGGGATCTTCCGCTCCTCCTCCAAAGAGTCTTCCCCCAACTCCAACCCTGCTACCTCGCCCGGGGGCATCAGGTTTTTCTCCCGCTCCAGAAAAA|GAGTTTGGAAAGGCAAGGTCAGCATGCTCTtCAG PMSAPVRPKTSPGSPKTVFPFSYQESPPRSPRRMSFSGIFRSSSKESSPNSNPATSPGGIRFFSRSRK|rvwkgkvsmlf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13048 ZNF862::PPP1R3A ENSG00000106479.11::ENSG00000154415.8 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2302 TRUE 886 ZNF862 ENSG00000106479.11 protein_coding + + chr7:149838375-149867479:+ chr7:149846255:+ chr7:149535464-149564568:+ chr7:149543344:+ PPP1R3A ENSG00000154415.8 protein_coding - - chr7:113876777-114075920:- chr7:113924687:- chr7:113516832-113715975:- chr7:113564742:- chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362 chr7:113936960,chr7:113936978,chr7:113936982,chr7:113936989,chr7:113936991,chr7:113936994,chr7:113936997,chr7:113937001,chr7:113937002,chr7:113936966,chr7:113937006,chr7:113937008,chr7:113937013,chr7:113936949,chr7:113936968,chr7:113936971,chr7:113936973,chr7:113936976 NA NA chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451 chr7:113577015,chr7:113577033,chr7:113577037,chr7:113577044,chr7:113577046,chr7:113577049,chr7:113577052,chr7:113577056,chr7:113577057,chr7:113577021,chr7:113577061,chr7:113577063,chr7:113577068,chr7:113577004,chr7:113577023,chr7:113577026,chr7:113577028,chr7:113577031 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none KRAB_box(39%)|Carbohydrate/starch-binding_module_(family_21)(100%) KRAB(0%)|CBM53(100%),CBM_21(100%) 1 2 6 94 6 ENST00000223210.5 unknown downstream downstream duplicates(1),mismatches(1) CTCAGCTCAGCGCGCTTATCCTGGGTCCACCGGCGCTACCGCCCCCCGACGTGAGAGAGCGAAGTTCTTGGGCCGCGCTCCCTCCCTACCTGGGTGCCCTCCCCCTCCGGGAGCCTGGGTCCCCGGGGCGGTCGCGGCGGCgGCgaCCTtcGGCCgGGgCGCGGGGG...GTACTTACTCCAGGAGGAATGGGTGCTGCTGAGCCAGCAACAGAAGGAGCTCTGTGGTTCCAACAAGCTGGTGGCACCACTGG___GACCAACTGTTGCCAATCCTGAGCTGTTCCGCAAGTTCGGACGAGGGCCAGAGCCATGGCTTGGCAGCGTCCAGGGCCAGAGGAGCCTTCTGGAGCATCACCCAG|GGTTAATGCTGGAATCACACACAAGTCAAGGGAGAATCCAGTTGACCACTGAAATTTCAATTTTCAGTGTAAAATGAAGAGGTTATCTCTGATGTGTGCTTGCTAAACACCTTAGAGATCTAGATTTCTGACTATATATTTGTATGTCTTTATTTTGGTCAAAATTTAAAGCACATTATGCAATCCCTGTAAAATAAGCCCTTGGTGCTTGAGTATTATACTAGTTTATCTTTCATAAATTAAGCTAAACAATCTGAATGCTGCCTTTGGTGGCCAAAT YLLQEEWVLLSQQQKELCGSNKLVAPLGPTVANPELFRKFGRGPEPWLGSVQGQRSLLEHHP|glmleshtsqgriqltteisifsvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13049 ZNF862::PPP1R3A ENSG00000106479.11::ENSG00000154415.8 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2302 TRUE 886 ZNF862 ENSG00000106479.11 protein_coding + + chr7:149838375-149867479:+ chr7:149846255:+ chr7:149535464-149564568:+ chr7:149543344:+ PPP1R3A ENSG00000154415.8 protein_coding - - chr7:113876777-114075920:- chr7:113918297:- chr7:113516832-113715975:- chr7:113558352:- chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362,chr7:149846362 chr7:113936960,chr7:113936978,chr7:113936982,chr7:113936989,chr7:113936991,chr7:113936994,chr7:113936997,chr7:113937001,chr7:113937002,chr7:113936966,chr7:113937006,chr7:113937008,chr7:113937013,chr7:113936949,chr7:113936968,chr7:113936971,chr7:113936973,chr7:113936976 NA NA chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451,chr7:149543451 chr7:113577015,chr7:113577033,chr7:113577037,chr7:113577044,chr7:113577046,chr7:113577049,chr7:113577052,chr7:113577056,chr7:113577057,chr7:113577021,chr7:113577061,chr7:113577063,chr7:113577068,chr7:113577004,chr7:113577023,chr7:113577026,chr7:113577028,chr7:113577031 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none KRAB_box(39%)| KRAB(0%)| 1 2 3 94 3 ENST00000223210.5 ENST00000284602.1 downstream downstream none CTGCTGAGCCAGCAACAGAAGGAGCTCTGTGGTTCCAACAAGCTGGTGGCACCACTGG___GACCAACTGTTGCCAATCCTGAGCTGTTCCGCAAGTTCGGACGAGGGCCAGAGCCATGGCTTGGCAGCGTCCAGGGCCAGAGGAGCCTTCTGGAGCATCACCCAG|AAAGAACAAGAGCCGGAGCCTGTAAAACCATGGAAAGAAGTTCCTAACAGACAAATAAAAGGCTGCTTAAAGGTAAAATCAAG___GGCTTCTAAATTTTCAGCTTTG...TTCATTTAGGATTGAACAGACATGCATATTAATTTCAGTAAAGTTTACACTTAGTAGCTATGTGGCTGTGGGCATATTACTTCAGAGCTCAAAGCCTCAGT...AGATGTAAACAGGGAACATGATGAACATAATGAAAAAGAATTAGAGTTGATG___ATAAATCAACACTTAATAAGAACCAGAAGTACTGCTTCCAGAGATGAAA LLSQQQKELCGSNKLVAPLGPTVANPELFRKFGRGPEPWLGSVQGQRSLLEHHP|eRTRAGACKTMERSS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13050 ARHGAP10::EDNRA ENSG00000071205.12::ENSG00000151617.17 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1307 FALSE NA FALSE NA ARHGAP10 ENSG00000071205.12 protein_coding + + chr4:147732063-148072776:+ chr4:147875150:+ chr4:148653214-148993927:+ chr4:148796301:+ EDNRA ENSG00000151617.17 protein_coding + + chr4:147480917-147544954:+ chr4:147542478:+ chr4:148402069-148466106:+ chr4:148463630:+ chr4:147876241,chr4:147876236 chr4:147541201,chr4:147541193 NA NA chr4:148797392,chr4:148797387 chr4:148462353,chr4:148462345 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BAR_domain_of_APPL_family(100%),PH_domain(9%)| BAR_3(100%),PH(0%)| 2 3 3 49 5 ENST00000336498.8 ENST00000324300.10 downstream upstream duplicates(1),low_entropy(1) GTGGAACCT___ATGCTGTCATTTTTTCAGGGGATGTTTACCTTCTATCATCAGGGCCATGAACTTGCCAAAGACTTCAATCACTACAAAATGGAACTACAGATCAACATTCAGAAT___ACACGGAATCGATTTGAAGGAACAAGGTCAGAAGTGGAAGAGCTCATGAACAAAATCAGACAGAATCCCAAGGACCACAAACGAGCAAGTCAGTTTACAGCCGAAGGCTACCTGTATGTCCAGGAAAAAA|TCATGCCTCTGCTGCTGCTGTTACCAGTCCAAAAGTCTGATGACCTCGGTCCCCATGAACGGAACAAGCATCCAGTGGAAGAACCACGATCAAAACAACCACAACACAGACCGGAGCAGCCATAAGGACAGCATGAACTGACCACCCTTAGAAGCACTCCTCGGTACTCC...TTAAATGAAACCAGAAGGATATTTACTACTTTTGCATGAAAATAGAGCTTTCAAGTACATGGCTAGCTTTTATGGCAGTTCTGGTGAATGTTCAATGGGAA VEPMLSFFQGMFTFYHQGHELAKDFNHYKMELQINIQNTRNRFEGTRSEVEELMNKIRQNPKDHKRASQFTAEGYLYVQEK|implllllpvqksddlgphernkhpveeprskqpqhrpeqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4799 chr4:147782595-147782668:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 148887990 FALSE 148441003 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13052 ARHGAP42::CNTN5 ENSG00000165895.19::ENSG00000149972.12 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100795166:+ chr11:100558019-100864672:+ chr11:100665897:+ CNTN5 ENSG00000149972.12 protein_coding + + chr11:99020949-100358885:+ chr11:99556145:+ chr11:98891679-100229616:+ chr11:99426876:+ chr11:100798445,chr11:100798443 chr11:99476329,chr11:99476324 NA NA chr11:100669176,chr11:100669174 chr11:99347060,chr11:99347055 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none BAR_domain_of_APPL_family(40%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) BAR_3(43%)|I-set(100%),Ig_2(100%),Ig_3(100%),fn3(100%),ig(100%) 4 0 2 43 4 ENST00000298815.13 ENST00000524871.6 downstream upstream mismatches(1) GCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA___ATCTGTCTATGGCAGTGCAGAAATTTTCCCAGTCATTGCAAGATTTCCAGTTTGAATGTATTGGTGATGCTGAAACAGATGATGAAATTAGTATTG___CTCAGTCACTAAAAGAATTTGCAAGACTACTCATTGCAGTAGAAGAAGAAAGGCGAAGACTG|GGCACTCTTTAATGAAGAAACACCAGAGCTGTTAAACACATTGAGACACAGAAG...AACCAAAATATATCAAGGTCTCCATTACAAAATATCCTCAGGTATTAATTTAAATTTATATCAGTATTTATACTTTCCAACAAGAGAAAGGCAGCAACCC RLQCHEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRL|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13055 ZDHHC14::SNX9 ENSG00000175048.17::ENSG00000130340.17 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC14 ENSG00000175048.17 protein_coding + + chr6:157381133-157678157:+ chr6:157382266:+ chr6:157802165-158099189:+ chr6:157803298:+ SNX9 ENSG00000130340.17 protein_coding + + chr6:157700387-157945077:+ chr6:157896827:+ chr6:158121419-158366109:+ chr6:158317859:+ chr6:157404567,chr6:157404564,chr6:157404568 chr6:157894480,chr6:157894461,chr6:157894478 NA NA chr6:157825599,chr6:157825596,chr6:157825600 chr6:158315512,chr6:158315493,chr6:158315510 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |PX_domain(100%),WASP-binding_domain_of_Sorting_nexin_protein(100%) |BAR_3_WASP_bdg(100%),PX(100%) 1 1 2 64 263 ENST00000359775.10 ENST00000392185.8 downstream upstream none CGCGGCCGGGGGGCTCCTGGGGGTGTGaGCCCCCAGCCGGCTGCCCTCGTGGATGCCTCCCGGCGGCGGCGGGCCCATGAAAGACTGCGAGTACAGCCAGATCAGCACCCACAGCTCCTCCCCCATGGAGTCGCCCCACAAGAAGAAGAAAATCGCGGCCCGGAGGAAATGGGAGGTGTTCCCGGGAAGAAACAAGTTCTTCTGTAACGGGAGGATCATGATGGCCCGGCAGACGGGCGTCTTCTACCTGACGCTCGTCCTCATCCTGGTCACTAGCGGACTCTTCTTCGCCTTCGA|GTTGGCAGTGGCAATGACCCCTGGTCAGCCTGGAGTGCCTCCAAATCTGGGAACTG?GAAAGCTCAGAAGGCTGGGGGGCCCAGCCAGAGGGGGCTGGAGCCCAAAGAAACAC...CAG___CAACTGGTGATGATGATGACTGGGATGAAGACTGGGATGGGCCCAAATCCTCTTCCTACTTTAAGGATTCAGAGTCAGCTGATGCAGGCGGCGCTCAG MPPGGGGPMKDCEYSQISTHSSSPMESPHKKKKIAARRKWEVFPGRNKFFCNGRIMMARQTGVFYLTLVLILVTSGLFFAFe|lavamtpgqpgvppnlgt?kaqkaggpsqrglepket NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13056 ITPR1::ENSG00000235978 ENSG00000150995.21::ENSG00000235978.8 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR1 ENSG00000150995.21 protein_coding + + chr3:4493345-4847506:+ chr3:4711868:+ chr3:4535029-4889190:+ chr3:4753552:+ ENSG00000235978 ENSG00000235978.8 lncRNA - + chr3:4793222-4887293:- chr3:4861796:+ chr3:4834906-4928977:- chr3:4903480:+ chr3:4715580,chr3:4715580 chr3:4861760,chr3:4861758 NA NA chr3:4757264,chr3:4757264 chr3:4903444,chr3:4903442 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Inositol_1_4_5-trisphosphate/ryanodine_receptor(100%),MIR_domain(100%),RIH_domain(100%)| Ins145_P3_rec(100%),MIR(100%),RYDR_ITPR(100%)| 3 2 7 32 20 ENST00000357086.10 unknown downstream upstream duplicates(1),mismappers(1),mismatches(1) CATGAACTGGCGGCTCTCAGCCCGCAATGCCGCACGCAGGGACTCTGTTCTGGCAGCTTCCAGAGACTACCGGAATATCATTGAGAGATTGCAG___GACATCGTCTCCGCGCTGGAGGACCGTCTCAGGCCCCTGGTGCAGGCAGAGTTATCTGTGCTCGTGGATGTTCTCCACAGACCCGAGCTGCTTTTCC...AGAACACAGACGCCAGAAGGAAATGTGAAAGTGGCGGTTTCATTTGCAA___GTTAATAAAGCATACAAAACAGCTGCTAGAAGAAAATGAAGAGAAGCTCTGCATTAAGGTCCTACAGACCCTGAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG|GATAGGGTCTCACTCTGCCACCCAGGCCAGAGTGCAGTGTACAATCATAGCTTGCTGCAGCCTCTATCTCCTGGGCTCAAGTGATCTTCCTGCCTCAGCCTGCTGAGTAGCTGGGACTACAAGCATGCACCACCACACCTGGCTATTTTTTCTTTTATTTTTAGTAGAGATGAAGTCTCTACTAAAGTCTCTACATTGCCCAGGCTGGTCTCAAACTCCAGAGCTCAAGTGATCCTCCTGCCTTGGGCTCTCAAAAGGCTGGAATTACAGGCTTGAGCCACCATGCCCAGC NTDARRKCESGGFICKLIKHTKQLLEENEEKLCIKVLQTLREMMTKDRGYGEK|drvslchpgqsavynhsllqplspglk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13058 CANX::ENSG00000289839 ENSG00000127022.16::ENSG00000289839.1 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CANX ENSG00000127022.16 protein_coding + + chr5:179678628-179731641:+ chr5:179707190:+ chr5:179105629-179158642:+ chr5:179134191:+ ENSG00000289839 ENSG00000289839.1 lncRNA + + chr5:180467269-180483286:+ chr5:180483115:+ chr5:179894269-179910286:+ chr5:179910115:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Calreticulin_family(8%)| Calreticulin(4%),Chibby(100%)| 1 2 3 7266 5 ENST00000681674.1 ENST00000700900.1 downstream upstream none ACCACTGCTCCTCCTTCATCTCCCAAG___GTTACTTACAAAGCTCCAGTTCCAACAGGGGAAGTATATTTTGCTGATTCTTTTGACAGAGGAACTCTGTCAGG___GTGGATTTTATCCAAAGCCAAGAAAGACGATACCGATGATGAAATTGCCAAATATGATG|ATTCCTTGGTGGTCCACAGACCCTGGAGTAAGAATCTCTGCCCTAGGGGATGACAGGACTGTAAgAGGAAGGGACCTGGGTCCCTGAATCACACGGGGGAAGTCACCTGCTGAATCAGAACGCCTCAACAGCTAGCTAGCCAAGAAATAAACGGAGAG...ACCCTGAGCCAACAAATTCCCATTTCTGCTTAAATCgCTTTAAATCAGTTTCTACTGTAGAAACTGAATGAGTCCTAATAAATTCAGACAGTG TTAPPSSPKVTYKAPVPTGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYD|dslvvhrpwsknlcprg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13065 AFG1L::FOXO3 ENSG00000135537.17::ENSG00000118689.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2304 TRUE 887 AFG1L ENSG00000135537.17 protein_coding + + chr6:108294991-108526796:+ chr6:108510352:+ chr6:108616195-108847999:+ chr6:108831555:+ FOXO3 ENSG00000118689.15 protein_coding + + chr6:108559835-108684774:+ chr6:108663455:+ chr6:108881038-109005977:+ chr6:108984658:+ chr6:108513244,chr6:108513244 chr6:108659888,chr6:108659885 NA NA chr6:108834447,chr6:108834447 chr6:108981091,chr6:108981088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none AFG1-like_ATPase(92%)|Forkhead_domain(39%),KIX-binding_domain_of_forkhead_box_O__CR2(100%),Transactivation_domain_of_FOXO_protein_family(100%) AFG1_ATPase(95%)|FOXO-TAD(100%),FOXO_KIX_bdg(100%),Forkhead(0%) 3 0 5 4 17 ENST00000368977.9 ENST00000343882.10 downstream upstream none TCGCCTTAAACAGAGTTTGCCAAAAAGGAAACCAGGATTCATGGCTAAATCATATGACCCAATAGCTCCCATAGCCGAAGAAATCAGCGAAGAAGCATGTC...GGATAGATTACCGGAAAAGGGAACTTCCTGCTGCAGGAAAACTCTACTACCT___CACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGAGCTGGCTCAGAAACAAAATGATT___TAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAGAGCTGCGCCTGAATAAAGCCTGTGGAACCGTTGCCGACTGCACATTTGAAGAGCTGTGTGAGAGA___CCACTTGGAGCCAGTGACTATTTGGAACTATCAAAGAATTTTGATACAATATTTTTACGAAACATTCCGCAATTTACTCTGGCAAACAGGACTCAAGGTCGAAGATTCATAACTCTCATCGATAACTTTTATGATCTCAAG|AACTCCATCCGGCACAACCTGTCACTGCATAGTCGATTCATGCGGGTCCAGAATGAGGGAACTGGCAAGAGCTCTTGGTGGATCATCAACCCTGATGGGGGGAAGAGCGGAAAAGCCCCCCGGCGGCGGGCTGTCTCCATGGACAATAGCAACAAGTATACCAAGAGCCGTGGCCGCGCAGCCAAGAAGAAGGCAGCCCTGCAGACAGCCCCCGAATCAGCTGACGACAGTCCCTCCCAGCTCTCCAAGTGGCCTGGCAGCCCCACGTCACGCAGCA IDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLK|NSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVSMDNSNKYTKSRGRAAKKKAALQTAPESADDSPSQLSKWPGSPTSRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE forkhead box O3 1 AL leukaemia_lymphoma oncogene, TSG, fusion translocation 13066 AFG1L::FOXO3 ENSG00000135537.17::ENSG00000118689.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2304 TRUE 887 AFG1L ENSG00000135537.17 protein_coding + + chr6:108294991-108526796:+ chr6:108477292:+ chr6:108616195-108847999:+ chr6:108798495:+ FOXO3 ENSG00000118689.15 protein_coding + + chr6:108559835-108684774:+ chr6:108663455:+ chr6:108881038-109005977:+ chr6:108984658:+ chr6:108513244,chr6:108513244 chr6:108659888,chr6:108659885 NA NA chr6:108834447,chr6:108834447 chr6:108981091,chr6:108981088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none AFG1-like_ATPase(79%)|Forkhead_domain(39%),KIX-binding_domain_of_forkhead_box_O__CR2(100%),Transactivation_domain_of_FOXO_protein_family(100%) AFG1_ATPase(77%)|FOXO-TAD(100%),FOXO_KIX_bdg(100%),Forkhead(0%) 1 1 3 9 17 ENST00000368977.9 ENST00000343882.10 downstream upstream none CAACATCCAACAGGCCACCGGAAG___ATCTCTATAAAAATGGACTCCAAAGAGCTAACTTTGTACCATTCATAGCAGTCTTGAAG___CACAAGTGAAGCTGATGT...TGAGCTGGCTCAGAAACAAAATGATT___TAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAGAGCTGCGCCTGAATAAAGCCTGTGGAACCGTTGCCGACTGCACATTTGAAGAGCTGTGTGAGAGA|AACTCCATCCGGCACAACCTGTCACTGCATAGTCGATTCATGCGGGTCCAGAATGAGGGAACTGGCAAGAGCTCTTGGTGGATCATCAACCCTGATGGGGGGAAGAGCGGAAAAGCCCCCCGGCGGCGGGCTGTCTCCATGGACAATAGCAACAAGTATACCAAGAGCCGTGGCCGCGCAGCCAAGAAGAAGGCAGCCCTGCAGACAGCCCCCGAATCAGCTGACGACAGTCCCTCCCAGCTCTCCAAGTGGCCTGGCAGCCCCACGTCACGCAGCA ELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCER|NSIRHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVSMDNSNKYTKSRGRAAKKKAALQTAPESADDSPSQLSKWPGSPTSRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE forkhead box O3 1 AL leukaemia_lymphoma oncogene, TSG, fusion translocation 13067 BLTP3A::ANKS1A ENSG00000065060.18::ENSG00000064999.16 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34871925:+ chr6:34759860-34845291:+ chr6:34839702:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34989224:+ chr6:34857032-35059183:+ chr6:34957001:+ chr6:34873564 chr6:34985347 NA NA chr6:34841341 chr6:34953124 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(100%)|Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(100%)|PID(100%),SAM_1(100%),SAM_2(100%) 4 0 3 79 121 ENST00000192788.6 ENST00000360359.5 downstream upstream none CATCACTCTGGCCATGGAACATGTTGTGCTGAAGAGGAGTGATGATGGTGTGTTCCACATAGGCG___CTGCTGCTCAGGACAAACCATCAGCTGAAGTACTTAAAAGTGAGAAGAGACAGCCCCCAAAAGAACAGGTGTTTTTGGTGCCCACAGGAGAGGTTTTTGAACAGCAG|AGGGAACGTCCACCACCTCCAGCAAAGCCACCGCCCGATGAAGAGGAAGAAGACCACATAGATAAGAAGTATTTTCCCTTGACAGCTTCTGAG___GTTCTGTCCATGAGACCTAGGATTCATG ITLAMEHVVLKRSDDGVFHIGAAAQDKPSAEVLKSEKRQPPKEQVFLVPTGEVFEQQ|RERPPPPAKPPPDEEEEDHIDKKYFPLTASEVLSMRPRIH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13069 MPC1::ENSG00000233365 ENSG00000060762.20::ENSG00000233365.2 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MPC1 ENSG00000060762.20 protein_coding - - chr6:166364919-166383013:- chr6:166382806:- chr6:166778407-166796501:- chr6:166796294:- ENSG00000233365 ENSG00000233365.2 lncRNA + - chr6:166236969-166256947:+ chr6:166239830:- chr6:166650457-166670435:+ chr6:166653318:- chr6:166375994,chr6:166376001 chr6:166241267,chr6:166241271 NA NA chr6:166789482,chr6:166789489 chr6:166654755,chr6:166654759 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Mitochondrial_pyruvate_carriers(4%)| MPC(0%)| 1 1 2 752 4 ENST00000621630.1 unknown upstream downstream mismatches(3) GGGTGTCATTGGCTCTGGGAAGCGGCAGCAGAGGCAGGGACCACTCGGGGTCTGGTGTCGGCACAGCCATGGCGGGCGCGTTGG?GCGGAAAGCGGCGGACTATGTCCGAAGCAAGGATTTCCGGGACTACCTCATGAG|TTTTGAAGCCTTTAGAGTTTAGCAGTGAAGTTTtGGTCATTCAACTCAATTACACCACGCATTTGTTTTTGGTGGATGGTTAATGCTGAAATCTTCATTTTCCTTAAAT___TGAGGTGCATCCCAGCCAGGATCTGGA MAGAL?RKAADYVRSKDFRDYLMs|feafrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13075 SPATS2L::FOXO3 ENSG00000196141.14::ENSG00000118689.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2305 TRUE 888 SPATS2L ENSG00000196141.14 protein_coding + + chr2:200305881-200482264:+ chr2:200309090:+ chr2:201170604-201346987:+ chr2:201173813:+ FOXO3 ENSG00000118689.15 protein_coding + + chr6:108559835-108684774:+ chr6:108662219:+ chr6:108881038-109005977:+ chr6:108983422:+ chr2:200320248,chr2:200320236 chr6:108617868,chr6:108617858 NA NA chr2:201184971,chr2:201184959 chr6:108939071,chr6:108939061 NA NA sense sense out-of-frame CDS/splice-site intron translocation low none |Forkhead_domain(39%),KIX-binding_domain_of_forkhead_box_O__CR2(100%),Transactivation_domain_of_FOXO_protein_family(100%) |FOXO-TAD(100%),FOXO_KIX_bdg(100%),Forkhead(1%) 1 0 1 8 1 ENST00000619961.4 unknown downstream upstream none CACACCGTTGCAGTCTTTGATTGCATGCCAGTCTGAAGCATTTTATGGACCCGTTTTGCCAT|ACTGAGGTTATGGGCTTTGGAAGGCAGACCACAGAAGGTGCCATTCTCATCATGTC MDPFCH|tevmgfgrqttegailim NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE forkhead box O3 1 AL leukaemia_lymphoma oncogene, TSG, fusion translocation 13076 SPATS2L::FOXO3 ENSG00000196141.14::ENSG00000118689.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2305 TRUE 888 SPATS2L ENSG00000196141.14 protein_coding + + chr2:200305881-200482264:+ chr2:200306601:+ chr2:201170604-201346987:+ chr2:201171324:+ FOXO3 ENSG00000118689.15 protein_coding + + chr6:108559835-108684774:+ chr6:108663455:+ chr6:108881038-109005977:+ chr6:108984658:+ chr2:200320248,chr2:200320236 chr6:108617868,chr6:108617858 NA NA chr2:201184971,chr2:201184959 chr6:108939071,chr6:108939061 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Forkhead_domain(39%),KIX-binding_domain_of_forkhead_box_O__CR2(100%),Transactivation_domain_of_FOXO_protein_family(100%) |FOXO-TAD(100%),FOXO_KIX_bdg(100%),Forkhead(0%) 0 1 0 47 17 ENST00000409988.7 ENST00000343882.10 downstream upstream none GCGCCGGCTGGGGTGTGTGCTCCTG|AACTCCATCCGGCACAACCTGTCACTGCATAGTCGATTCATGCGGGTCCAGAATGAGGGAACTGGCAAGAGCTCTT...ACCTTCAGTAAGCAAGCCGTGCACtGTGGAACTGCCACGGCTGACTGATATGGCAGGCACCATGAATCTGAATGATGGGCTGACTGAAAACCTCATGGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE forkhead box O3 1 AL leukaemia_lymphoma oncogene, TSG, fusion translocation 13077 AFAP1::ABLIM2 ENSG00000196526.11::ENSG00000163995.22 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AFAP1 ENSG00000196526.11 protein_coding - - chr4:7758714-7939926:- chr4:7871952:- chr4:7760441-7941653:- chr4:7873679:- ABLIM2 ENSG00000163995.22 protein_coding - - chr4:7965310-8158832:- chr4:8061054:- chr4:7967037-8160559:- chr4:8062781:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |LIM_domain(14%),Putative_adherens-junction_anchoring_region_of_AbLIM(100%),Villin_headpiece_domain(100%) |AbLIM_anchor(100%),LIM(0%),VHP(100%) 1 1 0 109 4 ENST00000358461.6 ENST00000361737.9 upstream downstream none CTGCGAGGTGGCGGCCTGAG___CAATGGAAGAGTTAATAGTTGAACTTCGTCTCTTTCTTGAACTCCTGGACCATGAATATCTAACCTCAACTGTCAGGGAGAAAAAGGCAGTGATAACCAACATTCTGCTAAGAATACAGTCATCCAAAG|GCCGGAGAGAAGCACTACCACCCTTCCTGCGCGCTATGTGTCAGGTGCGGC...ATGTTTGCAGAAGGCGAAGAGATGTATCTTCAAG___GTTCCTCCATCTGGCATCCGGCGTGTCGACAAGCAGCCAGAACTGAAGACAGAAACAAG___GAAACCAG MEELIVELRLFLELLDHEYLTSTVREKKAVITNILLRIQSSK|grrealppflramcqvr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-95 chr4:8005301-8005381:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Mesothelioma LUNG,BREAST,BREAST,MESOTHELIUM no_match 7941383|7941383|7941383,7776466,7857193,7840251 FALSE|FALSE|FALSE,FALSE,FALSE,FALSE 8010829|8009927|8009924,7994654,8099009,7986620 FALSE|FALSE|FALSE,FALSE,FALSE,FALSE YES,YES,YES,PARTIALLY 5UTR-CDS,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13078 EGFR::CUX1 ENSG00000146648.21::ENSG00000257923.12 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EGFR ENSG00000146648.21 protein_coding + + chr7:55019017-55211628:+ chr7:55019365:+ chr7:55086710-55279321:+ chr7:55087058:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101916115:+ chr7:101459184-101927250:+ chr7:101559395:+ chr7:55079843,chr7:55079842 chr7:101829421,chr7:101829417 NA NA chr7:55147536,chr7:55147535 chr7:101472701,chr7:101472697 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |CASP_C_terminal(100%),CUT_domain(100%),Homeodomain(100%) |CASP_C(100%),CUT(100%),Homeobox_KN(100%),Homeodomain(100%) 0 2 0 9 317 ENST00000275493.7 ENST00000437600.9 downstream upstream mismatches(1) CCGCCCGAGTCtCCGCCTCGCCGCCAACGCCACAACCACCGCGCACGGCCCCCTGACTCCGTCCAGTATTGATCGGGAGAGCCGGAaCGAGCTCTTCGGGG...GGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCTGGAGGAAAAGAAAG|AGAGAACTCGATGCCACCGCAACGGTATTGGCGAACCGGCAGGATGAAAGTGAGCAGTCCAGAAAGCGGCTTATCGAACAGAGCCGGGAGTTCAAGAAGAACACTCCAGAG...GAGTTTCCAAGGAGAG___ATTGATGCACTGAGTAAAAGAAGCAAGGAAGCTGAAcCAGCTTTCTTGAATGTCTACAAAAGATTGATTGACGTCCCAG___ATCCCG AALLALLAALCPASRALEEKK|ertrchrngigepag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Epidermal growth factor receptor TK EGFR P00533 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) 1 Yes glioma, NSCLC NSCLC familial lung cancer epithelial, other oncogene amplification, other, missense TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 13086 UNC50::COA5 ENSG00000115446.12::ENSG00000183513.9 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UNC50 ENSG00000115446.12 protein_coding + + chr2:98608579-98618515:+ chr2:98608726:+ chr2:99225042-99234978:+ chr2:99225189:+ COA5 ENSG00000183513.9 protein_coding - - chr2:98599314-98608515:- chr2:98604191:- chr2:99215777-99224978:- chr2:99220654:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Cytochrome_c_oxidase_assembly_protein_PET191(67%) |Pet191_N(45%) 1 1 0 678 741 ENST00000357765.7 ENST00000328709.8 downstream downstream none CGGAAGTCGGTTCCCGTGACGCGGCGCGCCCCAAGGGCCGGCTCCGTTGAGGGAAGGGAAGCCCGCCCGGTGGCGGCTGGGGTCGGCTGCTGGGAGGAGGTGGTGGGCTGGTTCGGACGTGGGTCGAGGCTGTAGCAGGACTCCAG|GAAGGAAAATCACCTCGGCAGTGTTTGAAGGAAGGA...GTGTAAAAGATCAGTG___TTGGATAACAGGGCAAGATTCAGAGGAAGAAAAGGATATTGATGCATTATGTTGAAGCCAACATGGAAAACAACAAATATTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13088 NFYC::ZFP69B ENSG00000066136.21::ENSG00000187801.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1308 TRUE 2306 TRUE 889 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:40710579,chr1:40710571,chr1:40710572 chr1:40455311,chr1:40455308,chr1:40455306 NA NA chr1:41176251,chr1:41176243,chr1:41176244 chr1:40920983,chr1:40920980,chr1:40920978 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 67 301 290 1314 2124 ENST00000467203.5 ENST00000411995.6 downstream upstream duplicates(154),low_entropy(1),mismatches(13) CTGGGAGTCCAGGCGCCAAGGGAGGGGGAAGGGAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG___GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13089 NFYC::ZFP69B ENSG00000066136.21::ENSG00000187801.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2306 TRUE 889 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40692200:+ chr1:41157320-41237275:+ chr1:41157872:+ ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:40710579,chr1:40710571,chr1:40710572 chr1:40455311,chr1:40455308,chr1:40455306 NA NA chr1:41176251,chr1:41176243,chr1:41176244 chr1:40920983,chr1:40920980,chr1:40920978 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 2 2 296 46 2124 ENST00000534399.5 ENST00000411995.6 downstream upstream duplicates(48),mismatches(16) GCCGCCATGTTGTGCTCTTGCCTGGCCCGCTGCTGTCGCCGCCGCCGCGCTCGTGGGGTCCGTGTGCCTCGTCGGCCCGGCCCGCGGGCTTTCTCCCATTGGCGGAAGGCGACGGCGGGGGGGCTCGCTCG?GATTGGTCGGTGGCGGGG?GGCCGCGG?CCTGGCACCTTATTGGACGCGCCAGCTCCGGTCTAGGGG|GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG___GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13090 NFYC::ZFP69B ENSG00000066136.21::ENSG00000187801.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2306 TRUE 889 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40457344:+ chr1:40915774-40929390:+ chr1:40923016:+ chr1:40710579,chr1:40710571,chr1:40710572 chr1:40455311,chr1:40455308,chr1:40455306 NA NA chr1:41176251,chr1:41176243,chr1:41176244 chr1:40920983,chr1:40920980,chr1:40920978 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 1 1 58 1314 3663 ENST00000467203.5 ENST00000411995.6 downstream upstream duplicates(13),mismatches(3) CCAGGCGCCAAGGGAGGGGGAAGGGAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG___ACTTGAAGAGCAAAACAAAAACCAAAGAGTCAGCCTTACAGAATGATATTTCGTGGGAAGAACTACATTGTGGCCTAATGATGGAAAGATTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13091 NFYC::ZFP69B ENSG00000066136.21::ENSG00000187801.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2306 TRUE 889 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40462421:+ chr1:40915774-40929390:+ chr1:40928093:+ chr1:40710579,chr1:40710571,chr1:40710572 chr1:40455311,chr1:40455308,chr1:40455306 NA NA chr1:41176251,chr1:41176243,chr1:41176244 chr1:40920983,chr1:40920980,chr1:40920978 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 15 1314 3359 ENST00000447388.8 ENST00000411995.6 downstream upstream duplicates(4),mismatches(1) AAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|ACTTGAAGAGCAAAACAAAAACCAAAGAGTCAGCCTTACAGAATGATATTTCGTGGGAAGAACTACATTGTGGCCTAATGATGGAAAGATTTACAAAAGGAAGCAGCATGTATTCCACCTTGGGAAGAATCTCCAAATGTAATAAGCTAGAAAGCCAACAAGAGAACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13092 SIL1::CTNNA1 ENSG00000120725.13::ENSG00000044115.21 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139121035:- chr5:138282413-138629246:- chr5:138456724:- CTNNA1 ENSG00000044115.21 protein_coding + - chr5:138610967-138935034:+ chr5:138669532:- chr5:137946656-138270723:+ chr5:138005221:- chr5:139069863,chr5:139069867 chr5:138685805,chr5:138685806 NA NA chr5:138405552,chr5:138405556 chr5:138021494,chr5:138021495 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 64 130 269 619 523 ENST00000394817.7 unknown upstream downstream duplicates(129),low_entropy(4),mismappers(12),mismatches(35) CGGAGGCCGAAG___GTCCCTGACTATGGCTCCCCAGAGCCTGCCTTCATCTAGGATGGCTCCTCTGGGCATGCTGCTTGGGCTGCTGATGGCCGCCTGCTTCACCTTCTGCCTCAGTCATCAGAACCTG___AAGGAGTTTGCCCTGACCAACCCAGAGAAGAGCAGCACCAAAGAAACgGAGAGAAAAGAAACCAAAGCCGAGGAGGAGCTGGATGCCGAAGTCCTGGAGGTGTTCCACCCGACGCATGAGTGGCAGGCCCTTCAGCCAG|GTCCTCCCATCTCAGAGGATGCATCCTCATGAGTGCAGGTTTCTGCCATCGATGGAATTCATACCTTCATTCCCTTTCTGATCTTGAGAGTTCCAACTAACCCTCCTGAGTTGAGACCATCCCACTTTAATCTGGGAAGCATTAAGCCTCCAATCCTAATCTTTGTTTAAAACGTCTGTTTGGAAGTTGTCTTCTGGGTATCCTGCTGCTTGCAGCTTCTCTTTTCTACTCTGAACTACACCAATCCTCATGGGGGTCAAGAAAGTCCACACTTCAAGGACA MAPQSLPSSRMAPLGMLLGLLMAACFTFCLSHQNLKEFALTNPEKSSTKETERKETKAEEELDAEVLEVFHPTHEWQALQP|gppisedass* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13094 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2307 TRUE 890 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39740165:+ chr1:40157854-40229586:+ chr1:40205837:+ chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40196780,chr1:40221653,chr1:40201069,chr1:40201580,chr1:40216839,chr1:40221322,chr1:40221387 chr1:39738989,chr1:39739010,chr1:39738987,chr1:39738986,chr1:39738984,chr1:39738996,chr1:39738980,chr1:39738979,chr1:39739031,chr1:39738977,chr1:39738976,chr1:39738975,chr1:39738974,chr1:39739028,chr1:39738978,chr1:39738973,chr1:39739011,chr1:39738972,chr1:39738971,chr1:39738970,chr1:39738969,chr1:39738968,chr1:39738967,chr1:39738966,chr1:39738965,chr1:39738964,chr1:39738963,chr1:39738962,chr1:39739033,chr1:39739032,chr1:39739030,chr1:39739029,chr1:39739027,chr1:39739026,chr1:39739025,chr1:39739024,chr1:39739023,chr1:39739022,chr1:39739021,chr1:39739020,chr1:39739017,chr1:39739016,chr1:39739013,chr1:39739008,chr1:39739007,chr1:39739006,chr1:39739005,chr1:39739004,chr1:39739003,chr1:39739009,chr1:39739001,chr1:39739000,chr1:39738998,chr1:39738997,chr1:39738994,chr1:39738993,chr1:39738992,chr1:39738991,chr1:39738990,chr1:39713439,chr1:39713439,chr1:39737966,chr1:39738472,chr1:39732142,chr1:39718432,chr1:39718390 NA NA chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40662452,chr1:40687325,chr1:40666741,chr1:40667252,chr1:40682511,chr1:40686994,chr1:40687059 chr1:40204661,chr1:40204682,chr1:40204659,chr1:40204658,chr1:40204656,chr1:40204668,chr1:40204652,chr1:40204651,chr1:40204703,chr1:40204649,chr1:40204648,chr1:40204647,chr1:40204646,chr1:40204700,chr1:40204650,chr1:40204645,chr1:40204683,chr1:40204644,chr1:40204643,chr1:40204642,chr1:40204641,chr1:40204640,chr1:40204639,chr1:40204638,chr1:40204637,chr1:40204636,chr1:40204635,chr1:40204634,chr1:40204705,chr1:40204704,chr1:40204702,chr1:40204701,chr1:40204699,chr1:40204698,chr1:40204697,chr1:40204696,chr1:40204695,chr1:40204694,chr1:40204693,chr1:40204692,chr1:40204689,chr1:40204688,chr1:40204685,chr1:40204680,chr1:40204679,chr1:40204678,chr1:40204677,chr1:40204676,chr1:40204675,chr1:40204681,chr1:40204673,chr1:40204672,chr1:40204670,chr1:40204669,chr1:40204666,chr1:40204665,chr1:40204664,chr1:40204663,chr1:40204662,chr1:40179111,chr1:40179111,chr1:40203638,chr1:40204144,chr1:40197814,chr1:40184104,chr1:40184062 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(95%) |Pro_isomerase(100%),RRM_1(71%),RRM_5(74%),TGF_beta(100%) 0 2 1 2015 853 ENST00000372771.5 ENST00000356511.6 downstream upstream duplicates(1) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCC...GTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTGGACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGG...TTATGAAACAG___AAAAGCACCGAGGATTTGCTTTTGTTGAATTTGAGTTGGCAGAG___GATGCTGCAGCAGCTATCGACAACATG___AATGAATCTGAGCTTTTTGGACGTACAATTCGTGTCAATTTGGCCAAACCAATGAGAATTAAGGAAGGCTCTTCCAGGCCAG___TTTGGTCAGATGATG SEVSSLNYCRSFCQ|vdwqrkwttkffmlrsfll NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13095 RLF::PPIE ENSG00000117000.9::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2307 TRUE 890 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39748903:+ chr1:40157854-40229586:+ chr1:40214575:+ chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40235915,chr1:40196780,chr1:40221653,chr1:40201069,chr1:40201580,chr1:40216839,chr1:40221322,chr1:40221387 chr1:39738989,chr1:39739010,chr1:39738987,chr1:39738986,chr1:39738984,chr1:39738996,chr1:39738980,chr1:39738979,chr1:39739031,chr1:39738977,chr1:39738976,chr1:39738975,chr1:39738974,chr1:39739028,chr1:39738978,chr1:39738973,chr1:39739011,chr1:39738972,chr1:39738971,chr1:39738970,chr1:39738969,chr1:39738968,chr1:39738967,chr1:39738966,chr1:39738965,chr1:39738964,chr1:39738963,chr1:39738962,chr1:39739033,chr1:39739032,chr1:39739030,chr1:39739029,chr1:39739027,chr1:39739026,chr1:39739025,chr1:39739024,chr1:39739023,chr1:39739022,chr1:39739021,chr1:39739020,chr1:39739017,chr1:39739016,chr1:39739013,chr1:39739008,chr1:39739007,chr1:39739006,chr1:39739005,chr1:39739004,chr1:39739003,chr1:39739009,chr1:39739001,chr1:39739000,chr1:39738998,chr1:39738997,chr1:39738994,chr1:39738993,chr1:39738992,chr1:39738991,chr1:39738990,chr1:39713439,chr1:39713439,chr1:39737966,chr1:39738472,chr1:39732142,chr1:39718432,chr1:39718390 NA NA chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40701587,chr1:40662452,chr1:40687325,chr1:40666741,chr1:40667252,chr1:40682511,chr1:40686994,chr1:40687059 chr1:40204661,chr1:40204682,chr1:40204659,chr1:40204658,chr1:40204656,chr1:40204668,chr1:40204652,chr1:40204651,chr1:40204703,chr1:40204649,chr1:40204648,chr1:40204647,chr1:40204646,chr1:40204700,chr1:40204650,chr1:40204645,chr1:40204683,chr1:40204644,chr1:40204643,chr1:40204642,chr1:40204641,chr1:40204640,chr1:40204639,chr1:40204638,chr1:40204637,chr1:40204636,chr1:40204635,chr1:40204634,chr1:40204705,chr1:40204704,chr1:40204702,chr1:40204701,chr1:40204699,chr1:40204698,chr1:40204697,chr1:40204696,chr1:40204695,chr1:40204694,chr1:40204693,chr1:40204692,chr1:40204689,chr1:40204688,chr1:40204685,chr1:40204680,chr1:40204679,chr1:40204678,chr1:40204677,chr1:40204676,chr1:40204675,chr1:40204681,chr1:40204673,chr1:40204672,chr1:40204670,chr1:40204669,chr1:40204666,chr1:40204665,chr1:40204664,chr1:40204663,chr1:40204662,chr1:40179111,chr1:40179111,chr1:40203638,chr1:40204144,chr1:40197814,chr1:40184104,chr1:40184062 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(84%) |Pro_isomerase(80%),TGF_beta(100%) 1 1 1 2015 555 ENST00000372771.5 ENST00000470213.5 downstream upstream none GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTAT...GTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AGAATTTCCGCTGCCTGTGCACTCATGAAAAGGGCTTTGGCTTTAAGGGAAGCAGCTTCC...TCATGTGCCAGGGCGGTGATTTCACAAACCACAATGGCACTGGGGGCAAGTCCATCTATGGGAAGAAGTTCGATGATGAAAACTTTATCCTCAAGCATACGGGACCAG___GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATG SEVSSLNYCRSFCQ|RISAACALMKRALALREAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13096 MFSD2A::LINC02811 ENSG00000168389.18::ENSG00000284678.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1309 TRUE 2308 TRUE 891 MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39955385:+ chr1:40420784-40435640:+ chr1:40421057:+ LINC02811 ENSG00000284678.1 lncRNA - - chr1:39801414-39817460:- chr1:39801484:- chr1:40267086-40283132:- chr1:40267156:- chr1:39955610,chr1:39955610,chr1:39955590,chr1:39955610,chr1:39955606 chr1:39803737,chr1:39803732,chr1:39803738,chr1:39803733,chr1:39803737 NA NA chr1:40421282,chr1:40421282,chr1:40421262,chr1:40421282,chr1:40421278 chr1:40269409,chr1:40269404,chr1:40269410,chr1:40269405,chr1:40269409 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none none none 67 38 111 2626 232 ENST00000420632.6 ENST00000641026.1 downstream downstream duplicates(53),mismatches(30) CAGCAGAGTGCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGAGGAGCAGCGGCCTGCGGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAG|ATGGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACCGCAACCTTCGCCTCCCAGGTTCAAGTGATCTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGATGTGCACTACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13097 MFSD2A::LINC02811 ENSG00000168389.18::ENSG00000284678.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2308 TRUE 891 MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39955379:+ chr1:40420784-40435640:+ chr1:40421051:+ LINC02811 ENSG00000284678.1 lncRNA - - chr1:39801414-39817460:- chr1:39801484:- chr1:40267086-40283132:- chr1:40267156:- chr1:39955610,chr1:39955610,chr1:39955590,chr1:39955610,chr1:39955606 chr1:39803737,chr1:39803732,chr1:39803738,chr1:39803733,chr1:39803737 NA NA chr1:40421282,chr1:40421282,chr1:40421262,chr1:40421282,chr1:40421278 chr1:40269409,chr1:40269404,chr1:40269410,chr1:40269405,chr1:40269409 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 8 2 109 2444 232 ENST00000434861.5 ENST00000641026.1 downstream downstream duplicates(40),mismatches(19) CGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGAGGAGCAGCGGCCTGCGGGGCAGAGGAGCATCCCGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCAGCATCCTCCAAAGCACTGAACGCCCGGCCCAG|ATGGAATCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTTGGCTCACCGCAACCTTCGCCTCCCAGGTTCAAGTGATCTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGATGTGCACTACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGAC MAKGEGAESGSAAGLLPTSILQSTERPAQ|meshsvaqagvqwrdlgspqpspprfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13098 ZFP69B::RLF ENSG00000187801.15::ENSG00000117000.9 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40457439:+ chr1:40915774-40929390:+ chr1:40923111:+ RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40222574:+ chr1:40627059-40706593:+ chr1:40688246:+ chr1:40461940,chr1:40462218,chr1:40461651 chr1:40216869,chr1:40216882,chr1:40216927 NA NA chr1:40927612,chr1:40927890,chr1:40927323 chr1:40682541,chr1:40682554,chr1:40682599 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none KRAB_box(100%),SCAN_domain(100%)|Zinc_finger__C2H2_type(100%) KRAB(100%),SCAN(100%)|zf-C2H2(100%) 57 45 91 3613 2060 ENST00000411995.6 ENST00000372771.5 downstream upstream duplicates(56),mismatches(11) ACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG___GATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAG|ATTGCAAAGGTCGACTGCAAGGAAGTACTAGACATCATTTGTAATCTGGAATCTGAGGGGCAGGATAACACAGCATTTGTTCTTTGTACGACTTACCTTACCCAGCAGCTCCAAACTGCAAGTGTATATTGTTCTTG___GGAACTGACTCTTTTTTGGAGTAAACTGCAAAGAAGAATTGACCCTTCTTTAGATACTTTTTTGGAGCGCTGTCGTCAGTTTGGTGTCATAGCTAAAACGCAGCAGCATTTATTTTGCCTCATTAGAGTTATACAAACTGAA___GCACAAGATGCTGG TQEEWGQLAPAHRNLYREVMLENYGNLVSVGCQLSKPGVISQLEKGEEPWLMERDISGVPSS|dckgrlqgstrhhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13100 CAP1::RIMS3 ENSG00000131236.18::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40041493:+ chr1:40505905-40538321:+ chr1:40507165:+ RIMS3 ENSG00000117016.10 protein_coding - + chr1:40620680-40665682:- chr1:40626015:+ chr1:41086352-41131354:- chr1:41091687:+ chr1:40049716,chr1:40049717 chr1:40625593,chr1:40625591 NA NA chr1:40515388,chr1:40515389 chr1:41091265,chr1:41091263 NA NA sense antisense unknown 5'UTR/splice-site 3'UTR deletion/5'-5' high none none none 16 87 80 700 1328 ENST00000414281.5 unknown downstream upstream duplicates(62),homopolymer(1),mismatches(17) AGCGGAGAGCGGCTGATCGCAGTCCGGAG___...CGGAACTCTGAG___GCAGATATCCTCCCTTTCCTCCTCGGCTGCTGCTCTTACTTTGACAAGCCAGGCTAACATTGAAG|AAAACAGTGGCAGAGCCGGGAGAGTCAAGAGTGGAACAAAAGACAAGACAGAAAACAAAGCAGAGACCACCAGGAGCAGGCACAGGTGAAGAACACACAGGCTCTGCCCCAGGCCAGGACCAGGCAGCACCGACCAGTGGCCGCATGCCCCACCTCCATCCCTGGAGACTCCTCAGG___GTTCTTCATCTATGAAACGAGCATGAAGATCCCTCCCTCCCAGGACTGTTGAGAAGGGCTAACAATACCAAGTGTGCAGAAGGCCTTTGTTGCTCTCAAGTAATTGGGATGACAGTCACCTGGCCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13101 NFYC::EXO5-DT ENSG00000066136.21::ENSG00000238287.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2309 TRUE 892 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40498295:- chr1:40958829-40974333:- chr1:40963967:- chr1:40703015 chr1:40503184 NA NA chr1:41168687 chr1:40968856 NA NA sense sense unknown 5'UTR/splice-site intron inversion high none none none 4 59 59 1314 280 ENST00000427410.6 ENST00000450713.1 downstream downstream duplicates(43),mismatches(9) AGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GGTCTCACTCTGTTGCTCAGGCTGGAGTGCAGTTGGTATGATCATGGTTCACTGCAGCCTCAATCTCCCAGGCTCAAGCAAACCTCCACCTCAGCCTCCCAAGTAGCTGGGACCACAG___GTCCCTGATTCTGGTCTTGAATAGCGGAGGAGGAAAAGAAGATGATGGGGGAAAAGAAAAGAAGCCATTTATGCATCCCTCCCTAATTCAGTATCCGAGCATGAGGGAGTGTCAAGCTAGTGGGGAAGAAGAGAGGGTTTAGTTTTGAATGAAGTTGGGAGTTTTTA...___GAACGGGATCATCAATGGAACTCTTTGAGATTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13102 NFYC::EXO5-DT ENSG00000066136.21::ENSG00000238287.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2309 TRUE 892 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40493688:- chr1:40958829-40974333:- chr1:40959360:- chr1:40703015 chr1:40503184 NA NA chr1:41168687 chr1:40968856 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 8 23 33 1314 544 ENST00000467203.5 ENST00000450713.1 downstream downstream duplicates(18),mismatches(5) CCAAGGGAGGGGGAAGGGAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GTCCCTGATTCTGGTCTTGAATAGCGGAGGAGGAAAAGAAGATGATGGGGGAAAAGAAAAGAAGCCATTTATGCATCCCTCCCTAATTCAGTATCCGAGCATGAGGGAGTGTCAAGCTAGTGGGGAAGAAGAGAGGGTTTAGTTTTGAATGAAGTTGGGAGTTTTTATTATTGCACTGAACTAAATAGGCATTTTACTAAAGTCAAGACTGTTCTTGTTATTTAAAGGAACGGGATCATCAATGGAACTCTTTGAGATTTCATCCAGAGGCTGGGAAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13110 RLF::RIMS3 ENSG00000117000.9::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2310 TRUE 893 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40629372:- chr1:41086352-41131354:- chr1:41095044:- chr1:40219581,chr1:40219583,chr1:40219591,chr1:40219573,chr1:40219588,chr1:40219603,chr1:40219608,chr1:40219617,chr1:40219589,chr1:40219623,chr1:40219635 chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656 NA NA chr1:40685253,chr1:40685255,chr1:40685263,chr1:40685245,chr1:40685260,chr1:40685275,chr1:40685280,chr1:40685289,chr1:40685261,chr1:40685295,chr1:40685307 chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |C2_domain(100%) |C2(100%) 1 0 1 2015 662 ENST00000372771.5 ENST00000372684.8 downstream downstream duplicates(1),mismatches(1) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGgCC...GTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGgGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAGATGTGCACATTGCCATCATGGACCGGAGTGGCCAGCTGGAGGTGGAAGTGATTGAAGCTCGGGGagTGACgaaCgAACCAGGCgCCAAATCtCTCtCAG___CCACCTATATCAAGGTTTACCTGCTaGAGAATGGGGCCTGCTTGGCCAAGAAGAAGAC VRGHRPVSPAPGASGLRPCLWQLETELREQEgSEVSSLNYCRSFCQ|emctlpswtgvaswrwk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13111 RLF::RIMS3 ENSG00000117000.9::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2310 TRUE 893 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40626729:- chr1:41086352-41131354:- chr1:41092401:- chr1:40219581,chr1:40219583,chr1:40219591,chr1:40219573,chr1:40219588,chr1:40219603,chr1:40219608,chr1:40219617,chr1:40219589,chr1:40219623,chr1:40219635 chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656,chr1:40638656 NA NA chr1:40685253,chr1:40685255,chr1:40685263,chr1:40685245,chr1:40685260,chr1:40685275,chr1:40685280,chr1:40685289,chr1:40685261,chr1:40685295,chr1:40685307 chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328,chr1:41104328 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |C2_domain(35%) |C2(4%) 0 1 0 2015 555 ENST00000372771.5 ENST00000372684.8 downstream downstream none GAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTGATCGTCTGGGGAGACTATGGCCGaATGGACCACAAGTGCTTCATGGGaATGGCCCAGAT...CCCAGTCTTCCCTGGAGAGTGCCACCAGCCCCTCATGCTCTTAAGGATGTCAGGAAGAGGCCAGGATGGTGGTGTGGGGAGGGGTGCCTGCTGGCCCCATG EVSSLNYCRSFCQ|VIVWGDYGRMDHKCFMGMAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13113 ZNF684::NFYC ENSG00000117010.17::ENSG00000066136.21 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF684 ENSG00000117010.17 protein_coding + + chr1:40531573-40548167:+ chr1:40533181:+ chr1:40997245-41013839:+ chr1:40998853:+ NFYC ENSG00000066136.21 protein_coding + - chr1:40691648-40771603:+ chr1:40717137:- chr1:41157320-41237275:+ chr1:41182809:- chr1:40538826,chr1:40538826,chr1:40538833,chr1:40538860,chr1:40538860,chr1:40539027,chr1:40538861,chr1:40538844,chr1:40538848 chr1:40720178,chr1:40720176,chr1:40720178,chr1:40720178,chr1:40720176,chr1:40720178,chr1:40720177,chr1:40720177,chr1:40720177 NA NA chr1:41004498,chr1:41004498,chr1:41004505,chr1:41004532,chr1:41004532,chr1:41004699,chr1:41004533,chr1:41004516,chr1:41004520 chr1:41185850,chr1:41185848,chr1:41185850,chr1:41185850,chr1:41185848,chr1:41185850,chr1:41185849,chr1:41185849,chr1:41185849 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 1 2 26 1183 46 ENST00000372699.8 unknown downstream downstream duplicates(4),mismatches(3) AGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACGCTGTGACTGATCCCAGGCTTGGAGCCGGAGCTGCGAGCGAGGCAGTGAAAGGtTGGCAG___ATTTCTGTGTAAGAGCTGCAGAAAATGATCAGCTTCCAG|GTTCAGCTATAATCTCTATGATCCTAAATTCCAAATATACATTACCAATTTTGATATTTCTCCAAAGCTTCAGTCCTTCATGTACAAGCTGCCTGGCTGGACATCTACAACCAGAAAGCTACCCAGAACTGAAATTCCACGTGCCCCAAATCAAATCTATCTTCTTTTCCCCCCAAACTTGCTCTTCCTAAATTTCTGTTTCTATCCTCCAGTCACCCAGACTGGATAGAAATCTCAGTATCATTTTGCACTTTTT MISFQ|vql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13118 ZNF684::PPIE ENSG00000117010.17::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2312 TRUE 894 ZNF684 ENSG00000117010.17 protein_coding + + chr1:40531573-40548167:+ chr1:40533181:+ chr1:40997245-41013839:+ chr1:40998853:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39717633:+ chr1:40157854-40229586:+ chr1:40183305:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |Pro_isomerase(100%),RRM_1(100%),RRM_5(100%),TGF_beta(100%) 3 4 16 1183 57 ENST00000372699.8 ENST00000470018.5 downstream upstream duplicates(10),mismatches(2) GCCGGTATTCAATCTTCAAATCAGCGCCGCGGGAAGTGCGGGCGGGTGTTGCTCCCCTGTCTCTGGACGACGCTGTGACTGATCCCAGGCTTGGAGCCGGAGCTGCGAGCGAGGCAGTGAAAGGtTGGCAG___ATTTCTGTGTAAGAGCTGCAGAAAATGATCAGCTTCCAG|GTGGACCTGTGCCACAGAGGAATTAAGTAACCTTCCCATGGTCACATAGCTG___GTGGACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGGAGACATCACAGATATTCAGATTCCTCTGGATTATGAAACAG___AAAAGCACCGAGGATTTGCTTTTGTTGAATTTGAGTTGGCAGAG___GATGCTGCAGCAGCTATCGACAACATG___AATGAATCTGAGCTTTTTGGACGTACAATTCGTGTCAATTTGGC MISFQ|vdlchrgik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13119 ZNF684::PPIE ENSG00000117010.17::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2312 TRUE 894 ZNF684 ENSG00000117010.17 protein_coding + + chr1:40531573-40548167:+ chr1:40533181:+ chr1:40997245-41013839:+ chr1:40998853:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39740165:+ chr1:40157854-40229586:+ chr1:40205837:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(95%) |Pro_isomerase(100%),RRM_1(71%),RRM_5(74%),TGF_beta(100%) 0 3 10 1183 853 ENST00000372699.8 ENST00000356511.6 downstream upstream duplicates(5),low_entropy(1),mismatches(1) CCTGTCTCTGGACGACGCTGTGACTGATCCCAGGCTTGGAGCCGGAGCTGCGAGCGAGGCAGTGAAAGGtTGGCAG___ATTTCTGTGTAAGAGCTGCAGAAAATGATCAGCTTCCAG|GTGGACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGGAGACATCACAGATATTCAGATTCCTCTGGATTATGAAACAG___AAAAGCACCGAGGATTTGCTTTTGTTGAATTTGAGTTGGCAGAG___GATGCTGCAGCAGCTATCGACAACATGGTATGGCTGGG...___AATGAATCTGAGCTTTTTG MISFQ|vdwqrkwttkffmlrsflletsqifrflwimkqkstedllllnlswqrmlqqlsttwygw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13120 ZNF684::PPIE ENSG00000117010.17::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2312 TRUE 894 ZNF684 ENSG00000117010.17 protein_coding + + chr1:40531573-40548167:+ chr1:40533181:+ chr1:40997245-41013839:+ chr1:40998853:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762318:+ chr1:40157854-40229586:+ chr1:40227990:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(13%) |Pro_isomerase(7%),TGF_beta(43%) 1 0 0 1183 1307 ENST00000372699.8 ENST00000467741.2 downstream upstream duplicates(1) GGCGGGTGTTGCTCCCCTGTCTCTGGACGACGCTGTGACTGATCCCAGGCTTGGAGCCGGAGCTGCGAGCGAGGCAGTGAAAGGtTGGCAG___ATTTCTGTGTAAGAGCTGCAGAAAATGATCAGCTTCCAG|GGTGAGCCACCGCACCTGATCAAGGCATCACCGTTGAACCTCCTAAGGGGAAAAC MISFQ|gepphlikasplnllrgk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13126 NFYC::ENSG00000238186 ENSG00000066136.21::ENSG00000238186.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ ENSG00000238186 ENSG00000238186.1 lncRNA - - chr1:40515754-40517174:- chr1:40516119:- chr1:40981426-40982846:- chr1:40981791:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 18 2 1314 183 ENST00000447388.8 ENST00000437060.1 downstream downstream duplicates(7) CCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GCTTGGAATAACACGTACACAACTATATATGGTGGTCATCTTTGAAGGACTGCAGTTATGAAAAAACCATCAGTTCAACTGTCCTGGACAGCATTTCATTTTATTATGTAACTGTAGAAAGCCTTGATCAAGATAAAAATAGGGATGACTTATCAGAAACTGAAGAATTTTCTTAGGAAAGCAAAGTTTACTGAAGGATACCTTCATTCCAGCCATGATGAGCATCTGTCTTCTCAGGCAATCATGATGAAGCTCCAGGGACAGTATAACCCATCTCTCCCACTCATCCCTGAGCCTTGGTCCTGGACTGAATGTGGTTAGAGGTTGTGGAAATAAAAAAAAGAACCAAAATAAGAACACTCTCCATAAAAGCCAAGCTCAGAGACTGGTCCTCTTTTGCTTAGGTACAACAGGAGCAGGAAGGATCAACATTCTTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13128 RLF::ENSG00000237899 ENSG00000117000.9::ENSG00000237899.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ENSG00000237899 ENSG00000237899.1 lncRNA - - chr1:40669089-40687588:- chr1:40669607:- chr1:41134761-41153260:- chr1:41135279:- chr1:40227997,chr1:40225548 chr1:40686155,chr1:40672781 NA NA chr1:40693669,chr1:40691220 chr1:41151827,chr1:41138453 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 1 2 2015 17 ENST00000372771.5 ENST00000440100.1 downstream downstream none GGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGcAGCGGGAGgCGGAGATGGAGTCGcGACTGAGTCCATGGTTCGGGGTCA...CCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|ATGCAGCTTGGAGG...CCATCAGGATTCGCTGTATCAGGAGTGTTCCTCTGCTGTCACCTCTGATGACTATTTTCCTCAATTCAGAATCCCCAGCACCTGCAAAAGGCCTGGATAAAG___gCCCTTTTATCACATCGCCTCCT[c]CTGGGAGCCTGCCCTGATTGCCTTCACCTCATTTCTTGAAAATTGGTGTTTTG PVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|mqlg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13134 ZMPSTE24::RIMS3 ENSG00000084073.10::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40286029:+ chr1:40723713-40759852:+ chr1:40751701:+ RIMS3 ENSG00000117016.10 protein_coding - + chr1:40620680-40665682:- chr1:40658279:+ chr1:41086352-41131354:- chr1:41123951:+ chr1:40287822,chr1:40290618,chr1:40287822 chr1:40654271,chr1:40641141,chr1:40654268 NA NA chr1:40753494,chr1:40756290,chr1:40753494 chr1:41119943,chr1:41106813,chr1:41119940 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none CAAX_prenyl_protease_N-terminal__five_membrane_helices(100%),Peptidase_family_M48(51%)| Peptidase_M48(67%),Peptidase_M48_N(100%)| 16 42 62 6871 125 ENST00000372759.4 unknown downstream upstream duplicates(23),mismatches(3) ACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAG|GCCTCTGAATGACATTTGACAGGTTCTTCAGAGCCTGTCCTGAGCACTGCTGCCCAGGAAAAGACTCTCCTTTAAGTCACAATTCCAGGCCTTTTTTCTCCAGCTGCTGTCCAGATGGAAGTTTGGGGCTCAGGCCCAACTGCCTGCACCCACATCGGCACTCTAAGAATTCCAGGAGATGTGTTTGGAAGCTAACGAAGATCCCCCTTCTCTGAGCGGGGCACTGAGAACCCTGTTTGCATGTCTCTTTGATCCTTCCCAGTAGGCTACAGATGACTGGACCAGGGTGGGC?CCTGCCTCACTCTGAGCCAATCAGATCCTCTCCTGGGAGTTTGGGATTGGATCTGCCAAGCCCCAAGTTCTC KDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQ|ase* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13137 TRIT1::BMP8B ENSG00000043514.17::ENSG00000116985.12 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1312 TRUE 2315 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- BMP8B ENSG00000116985.12 protein_coding - - chr1:39757182-39788865:- chr1:39775038:- chr1:40222854-40254537:- chr1:40240710:- chr1:39876923 chr1:39782787 NA NA chr1:40342595 chr1:40248459 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none IPP_transferase(0%)|TGF-beta_propeptide(63%),Transforming_growth_factor_beta_like_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|CoA_trans(100%),Pro_isomerase(100%),TGF_beta(100%),TGFb_propeptide(43%) 6 17 28 12633 3444 ENST00000316891.10 ENST00000372827.8 upstream downstream duplicates(14),low_entropy(1),mismatches(7) GTCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|TGGAGCGAGACCGTGCCCTGGGCCACCAGGAGCCCCATTGGAAGGAGTTCCGCTTTGACCTGACCCAGATCCCGGCTGGGGAGGCGGTCACAGCTGtGGAGTTCCGGATTTACAAGGTGCCCAGCATCCACCTGCTCAACAGGACCCTCCACGTCAGCATGTTCCAGGTGGTCCAGGAGCAGTCCAACAG___GGAGTCTGACTTGTTCTTTTTGGATCTTCAGACGCTCCGAGCTGGAGACGAGGGCTGGCTGGTGCTGGATGTCACAGCAGCCAGTGACTGCTGGTTGCTGAAGCGTCACAAGGACCTGGGA SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|wsetvpwatrspigrssalt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13146 SMAP2::TRIT1 ENSG00000084070.12::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2316 FALSE NA SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40374223:+ chr1:40810522-40888998:+ chr1:40839895:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844640:- chr1:40303782-40349183:- chr1:40310312:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Putative_GTPase_activating_protein_for_Arf(17%)|Zinc-finger_double-stranded_RNA-binding(100%) ArfGap(24%)|zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 3308 29600 ENST00000372718.8 ENST00000316891.10 downstream downstream none GGCCAACCTGCTGCTGGAGGAGGATAACAAGTTTTGTGCAGATTGCCAGTCTAAAG|GACCTGGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTG...GAAATGCAGCGTTTAAGAGACATGTCCAGTGGCCTTTGGAAAGGTGGTGGGGATCCAGTTCcGGAGGGAGGGGTATGTTTGTCTCCCAGTCTtGGCAAAGG ANLLLEEDNKFCADCQSK|gPGPIVPPVYGLEVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13147 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1314 TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281343:+ chr1:40723713-40759852:+ chr1:40747015:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Peptidase_family_M48(88%) |Peptidase_M48(54%) 0 20 2 1603 7138 ENST00000372792.7 ENST00000372759.4 downstream upstream duplicates(8),low_entropy(3),mismatches(1) CGGTTCTTGCCGGAAGCGGAGAGCGGCTGATCGCAGTCCGGAGGTGAGGCGGAACTCTGAG|GATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAG___ATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTGTATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTGATCATCTTCCAGTTTATTTTTTCACCTTACAATGAG___GTTCTTTCTTTTTGCCTAACAGTCCTAAGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13148 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040783:+ chr1:40505905-40538321:+ chr1:40506455:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281343:+ chr1:40723713-40759852:+ chr1:40747015:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Peptidase_family_M48(88%) |Peptidase_M48(54%) 0 7 2 1603 7138 ENST00000372797.7 ENST00000372759.4 downstream upstream duplicates(2) CGCGGGCCAGCCTAGCGCTTCAGCCGGCGGCTCATTTCCGGTGGGGGCGCCGCGCCCAGTGAGGGCCCGGAAGTGGGTCGCGCGGAGATTGCTGGGCGGTTCTTGCCGGAAGCGGAGAGCGGCTGATCGCAGTCCGGAG|GATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAG___ATGAATTCTTTCCTGTGTTTTTTTgTATTTGCTGTATTAATTGGTCGAAAGGAGCTTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13149 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40041493:+ chr1:40505905-40538321:+ chr1:40507165:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281343:+ chr1:40723713-40759852:+ chr1:40747015:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Peptidase_family_M48(88%) |Peptidase_M48(54%) 0 5 4 700 7138 ENST00000414281.5 ENST00000372759.4 downstream upstream duplicates(1),multimappers(1) GAG___...CGGAACTCTGAG___GCAGATATCCTCCCTTTCCTCCTCGGCTGCTGCTCTTACTTTGACAAGCCAGGCTAACATTGAAG|GATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13150 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040783:+ chr1:40505905-40538321:+ chr1:40506455:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40280120:+ chr1:40723713-40759852:+ chr1:40745792:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(88%) |Peptidase_M48(60%) 0 4 2 1603 417 ENST00000372797.7 ENST00000675937.1 downstream upstream duplicates(1) CGCGGGCCAGCCTAGCGCTTCAGCCGGCGGCTCATTTCCGGTGGGGGCGCCGCGCCCAGTGAGGGCCCGGAAGTGGGTCGCGCGGAGATTGCTGGGCGGTTCTTGCCGGAAGCGGAGAGCGGCTGATCGCAGTCCGGAG|TTTGCTTCAAATGCCAAACGACCGTAGAATGGTCGACATTGAGTTCTTCGGCAACTTCTTGTGTAGTTGTAAGGGGATCAGCTCCGATGATTGCTCTCCATTGGTCATTcTCAACTcCCGATGGCaTGCCACTACGCTCCTCATCTTCAAGGCTCTCATCTCCTTTGCAAACTTCTTGA...ATC?AAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13151 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40280120:+ chr1:40723713-40759852:+ chr1:40745792:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(88%) |Peptidase_M48(60%) 0 3 2 1603 417 ENST00000372797.7 ENST00000675937.1 downstream upstream duplicates(1) CGCGGGCCAGCCTAGCGCTTCAGCCGGCGGCTCATTTCCGGTGGGGGCGCCGCGCCCAGTGAGGGCCCGGAAGTGGGTCGCGCGGAGATTGCTGGGCGGTT...GCGGCTGATCGCAGTCCGGAGGTGAGGCGGAACTCTGAG|TTTGCTTCAAATGCCAAACGACCGTAGAATGGTCGACATTGAGTTCTTCGGCAACTTCTTGTGTAGTTGTAAGGGGA...CGATGGCCTGCCACTACGCTCCTCATCTTCAAGGCTCTCATCTCCTTTGCAAACTTCTTGAACCACCACTGCGCT___GATCTAAACGCTCTTCCCACAGCAA...GAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13152 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040783:+ chr1:40505905-40538321:+ chr1:40506455:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40285925:+ chr1:40723713-40759852:+ chr1:40751597:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(63%) |Peptidase_M48(32%) 0 2 0 1603 7442 ENST00000372797.7 ENST00000372759.4 downstream upstream duplicates(3) CGGAGAGCGGCTGATCGCAGTCCGGAG|AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTC...TTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTGATCATCTTCCAGTTTATTTTTTCACCTTACAATGAG___GTTCTTTCTTTTTG...AACAGTCCTAAGCCGCAGATTTGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTAACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13153 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40290854:+ chr1:40723713-40759852:+ chr1:40756526:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(48%) |Peptidase_M48(8%) 0 1 0 1603 6917 ENST00000372792.7 ENST00000372759.4 downstream upstream none CGCAGTCCGGAGGTGAGGCGGAACTCTGAG|ATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTGTATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGG...TTTTTGCCTAACAGTCCTAAGCCGCAGATTTGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13154 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2317 TRUE 895 CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40285925:+ chr1:40723713-40759852:+ chr1:40751597:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(63%) |Peptidase_M48(32%) 0 1 0 1603 7442 ENST00000372792.7 ENST00000372759.4 downstream upstream none CGGAGAGCGGCTGATCGCAGTCCGGAGGTGAGGCGGAACTCTGAG|AATAAGAAACAAGGAgGgAAAAATGAGGAGGgACTCGCTGTACTAGGCCATGAACT...CAGTTTATTTTTTCACCTTACAATGAG___GTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATTTGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13157 ZMPSTE24::TRIT1 ENSG00000084073.10::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1315 TRUE 2318 TRUE 896 ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40272035:+ chr1:40723713-40759852:+ chr1:40737707:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40275717 chr1:39881214 NA NA chr1:40741389 chr1:40346886 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none CAAX_prenyl_protease_N-terminal__five_membrane_helices(100%),Peptidase_family_M48(11%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) Peptidase_M48(0%),Peptidase_M48_N(100%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 2 5 8 6230 13654 ENST00000675937.1 ENST00000316891.10 downstream downstream duplicates(2),low_entropy(1),mismatches(2) CTTCTACTTTACATTATTAAAATTGGGGGTGACTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGTGTCTCTG___GTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGGGAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG___CCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAA LLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVE|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13158 ZMPSTE24::TRIT1 ENSG00000084073.10::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2318 TRUE 896 ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40272035:+ chr1:40723713-40759852:+ chr1:40737707:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39876132:- chr1:40303782-40349183:- chr1:40341804:- chr1:40275717 chr1:39881214 NA NA chr1:40741389 chr1:40346886 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none CAAX_prenyl_protease_N-terminal__five_membrane_helices(100%),Peptidase_family_M48(11%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) Peptidase_M48(0%),Peptidase_M48_N(100%)|AAA_33(58%),IPPT(80%),IPT(72%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 12 6230 83 ENST00000675937.1 ENST00000486825.6 downstream downstream mismatches(1) CTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGTGTCTCTG___GTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGGGAAAGCTTAAAGAAGAAATTGAAGTAATGGC...CTTTGACGAAGGTGTATGTTGTGGAAG|TTTTGGATTCCTCAGAAACTTGAATCAGACCAGGACCCTGTTGGCCTCTTGATCCCTTTGGGGCTCTGCTT___GTC...GACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGG LTKVYVVE|vldsset* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13159 ZMPSTE24::TRIT1 ENSG00000084073.10::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2318 TRUE 896 ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40258394:+ chr1:40723713-40759852:+ chr1:40724066:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40275717 chr1:39881214 NA NA chr1:40741389 chr1:40346886 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none CAAX_prenyl_protease_N-terminal__five_membrane_helices(0%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) Peptidase_M48_N(0%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 7100 13654 ENST00000675937.1 ENST00000316891.10 downstream downstream none GCCGAGAAGCGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCTTTGGGAGACCTTCCTAGCACAGCGGCAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTG AEKRIFGAVLLFSWTVYLWETFLAQRQ|VYEGLDIITNKVSAQEQRICRHHMISF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13162 C8orf44-SGK3::MCMDC2 ENSG00000288602.1::ENSG00000178460.18 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2319 TRUE 897 C8orf44-SGK3 ENSG00000288602.1 protein_coding + + chr8:66667596-66860472:+ chr8:66680024:+ chr8:67579831-67772707:+ chr8:67592259:+ MCMDC2 ENSG00000178460.18 protein_coding + + chr8:66870749-66922048:+ chr8:66874053:+ chr8:67782984-67834283:+ chr8:67786288:+ chr8:66705737,chr8:66705747 chr8:66873368,chr8:66873371 NA NA chr8:67617972,chr8:67617982 chr8:67785603,chr8:67785606 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through medium none |MCM_AAA-lid_domain(100%),MCM_P-loop_domain(100%) |MCM(100%),MCM_lid(100%) 3 1 10 83 18 ENST00000519289.1 ENST00000422365.7 downstream upstream duplicates(2),low_entropy(1) AAAAGGGGTCTTTGGCCATCTTCTGCTGGAGCTTCCAGGGAGGATGTGTCTCCAAGAGACCAGATGTACCGAGTTTGAAATCCCAGAAGCCCAAGAGGAAAAGAATCACAGGGAGGAAAAGACTGTCCAAAGGCTTCTGGAGTCTTCTGTTCTCTAACCTTGGAAGGTTTTGAACAATATTTCTCAGAGGATAGCCTTTCACTTATTCATCTGTCCAGCATGACTCATCCCCGGGAGTGTTGA|GTTTTCACATCCTTTCTATGAGTTTCGCCATCTATAGCTTTTATCAACAATTGTGGTTTAATCAATTAGAAATATTAACCAGGAGAAAATGTCAAATCTAAAAATGAAAGAGGCGGCCCTCATCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTATAGATGATTGCAAGTACTACAATG___ATTCAAAACAAAGCTATGCTGTCTATCGATTCAAAATTTTAATAAATCCCTCTGATGTTGTTGAATTAGATGCTGAGCTTGGAAATCACATTTTACACCAACCTTTAAAAGCTGCTGAAGTCTTTCAATCA___GATTTCAGTATATAAGAGTGCATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13163 C8orf44-SGK3::MCMDC2 ENSG00000288602.1::ENSG00000178460.18 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2319 TRUE 897 C8orf44-SGK3 ENSG00000288602.1 protein_coding + + chr8:66667596-66860472:+ chr8:66690760:+ chr8:67579831-67772707:+ chr8:67602995:+ MCMDC2 ENSG00000178460.18 protein_coding + + chr8:66870749-66922048:+ chr8:66874053:+ chr8:67782984-67834283:+ chr8:67786288:+ chr8:66705737,chr8:66705747 chr8:66873368,chr8:66873371 NA NA chr8:67617972,chr8:67617982 chr8:67785603,chr8:67785606 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through medium none |MCM_AAA-lid_domain(100%),MCM_P-loop_domain(100%) |MCM(100%),MCM_lid(100%) 0 3 10 6 18 ENST00000519289.1 ENST00000422365.7 downstream upstream duplicates(1) CGGGAGTGTTGA___ATGTCTCCTGTCTTCCTCCAGCATTCACAAACCAGGAACGGCTAGCTTTTTGACCT|GTTTTCACATCCTTTCTATGAGTTTCGCCATCTATAGCTTTTATCAACAATTGTGGTTTAATCAATTAGAAATATTAACCAGGAGAAAATGTCAAATCTAAAAATGAAAGAGGCGGCCCTCATCTATCTTGACAGAAGTGGAGGCCTCCAAAAGTTTATAGATGATTGCAAGTACTACAATG___ATTCAAAACAAAGCTATGCTGTCTATCGATTCAAAATTTTAATAAATCCC...___GTCTGTTTTATTGCTGTTAAGACTCTCTCATTAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13165 LDB3::BMPR1A ENSG00000122367.21::ENSG00000107779.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LDB3 ENSG00000122367.21 protein_coding + + chr10:86666785-86736072:+ chr10:86692571:+ chr10:88426542-88495829:+ chr10:88452328:+ BMPR1A ENSG00000107779.15 protein_coding + + chr10:86756596-86932825:+ chr10:86875867:+ chr10:88516353-88692582:+ chr10:88635624:+ chr10:86693085,chr10:86693153,chr10:86693151 chr10:86863888,chr10:86863888,chr10:86863883 NA NA chr10:88452842,chr10:88452910,chr10:88452908 chr10:88623645,chr10:88623645,chr10:88623640 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none Domain_of_unknown_function_(DUF4749)(100%),PDZ_domain(100%)|Activin_types_I_and_II_receptor_domain(100%),Protein_kinase_domain(100%),Transforming_growth_factor_beta_type_I_GS-motif(100%) DUF4749(100%),PDZ(100%)|Activin_recp(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),TGF_beta_GS(100%) 1 3 7 20 16 ENST00000429277.7 ENST00000638429.1 downstream upstream duplicates(5),mismatches(2) GCCGTAGACAGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAAGATGAGGCTGACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACGGGGACAGAATTCA___TGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCAAG|GAGTCGTAAGAAAGCAGTGGGAGTTGAAGTCATTGTCAAGTGCTTGCGATCTTTTACAAGAAAATCTCACTGAATGATAGTCATTTAAATTGGTGAAGTAGCAAGACCAATTATTAAAGGTGACAGTACACAGGAAACATTACAATTGAACAATGCCTCAGCTATACATTTACATCAGATTATTGGGAGCCTATTTGTTCATCATTTCTCGTGTTCAAG___GACAGAATCTGGATAGTATGCTTCATGGCACTGGGATGAAATCAGACTCCGACCAGAAAAAGTCAGAAAATGGAGTAACCTTAGCACCAG...CAGATGATGCTATTAATAACACATGCAT___AACTAATGGACATTGCTTTGCCATCATAGAAGAAGATGACCAGGGAGAAACCACATTAGCTTCAGGGTGTATG AVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSr|srkkavgvevivkclrsftrksh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Bone morphogenetic protein receptor type-1A TKL STKR STKR1 P36894 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bone morphogenetic protein receptor, type IA 1 Yes gastrointestinal polyps juvenile polyposis epithelial oncogene, TSG missense, nonsense, frameshift 13170 NFYC::COL9A2 ENSG00000066136.21::ENSG00000049089.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40315664:- chr1:40766161-40783485:- chr1:40781336:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Collagen_triple_helix_repeat_(20_copies)(100%) |Collagen(100%) 1 4 4 1314 61 ENST00000447388.8 ENST00000372748.8 downstream downstream none CGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|AGAGGTCCACCGGGAGAGCGGGGCCCCCCGGGTCCCCCGGGACCGCCGGGAGTGCCTGGATCCGACGGCATCGAC___GGTGACAATGGGCCCCCTGGAAAAGCTGGCCCTCCG___GGACCCAAGGGCGAGCCTGGCAAAGCTGGGCCAGATGGGCCAGACGGGAAGCCCGGGATTGAT___GGTTTAACTGGAGCCAAGGGGGAGCC...GGGCCCTGGTTTTGCTGGACCTCCTGTAAGTCCTCAGGGATGGGGCAGGATCCCCAGAACTCCCAGGGAgGGAGGGGACAACAGAAAGGCTTCGAGGGAAT...GGGGCATGCGGGCAAACGCGGGATTCTGGGTGATCCTGGCCACCAGGGGAAGCCG___GGTCCCAAGGGAGATGTGGGTGCCTCTGGAGAGCAAGGCATCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13175 NFYC::TRIT1 ENSG00000066136.21::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40696143,chr1:40703481,chr1:40703481,chr1:40707392,chr1:40707644,chr1:40707417,chr1:40695563 chr1:39883813,chr1:39865694,chr1:39865695,chr1:39867267,chr1:39867324,chr1:39866909,chr1:39883935 NA NA chr1:41161815,chr1:41169153,chr1:41169153,chr1:41173064,chr1:41173316,chr1:41173089,chr1:41161235 chr1:40349485,chr1:40331366,chr1:40331367,chr1:40332939,chr1:40332996,chr1:40332581,chr1:40349607 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 1 2 3 1314 13654 ENST00000427410.6 ENST00000316891.10 downstream downstream duplicates(1) GTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13176 NFYC::PPIE ENSG00000066136.21::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2322 TRUE 898 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39735468:+ chr1:40157854-40229586:+ chr1:40201140:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |Pro_isomerase(100%),RRM_1(100%),RRM_5(100%),TGF_beta(100%) 1 1 3 1314 63 ENST00000424419.6 ENST00000470018.5 downstream upstream duplicates(3) GAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GCACCCCAGCCTGCTGTCCATGTGCAGGCCAGGAACCCCTGACTGCCTCCATGCTGGCGGCAGCACTTTCCCAAGAACAGAAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13177 NFYC::PPIE ENSG00000066136.21::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2322 TRUE 898 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39740165:+ chr1:40157854-40229586:+ chr1:40205837:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(95%) |Pro_isomerase(100%),RRM_1(71%),RRM_5(74%),TGF_beta(100%) 0 2 3 1314 853 ENST00000424419.6 ENST00000356511.6 downstream upstream duplicates(4) GAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GTGGACTGGCAGAGGgAGgGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGGAGACA...CTCTGGATTATGAAACAG___AAAAGCACCGAGGATTTGCTTTTGTTGAATTTGAGTTGGCAGAG___GATGCTGCAGCAGCTATCGACAACATG___AATGAATCTGAGCTTTTTGGACGTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13178 NFYC::PPIE ENSG00000066136.21::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2322 TRUE 898 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39748903:+ chr1:40157854-40229586:+ chr1:40214575:+ chr1:40734394 chr1:39746022 NA NA chr1:41200066 chr1:40211694 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(84%) |Pro_isomerase(80%),TGF_beta(100%) 1 1 1 1314 555 ENST00000447388.8 ENST00000356511.6 downstream upstream duplicates(1) CTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|AGAATTTCCGCTGCCTGTGCACTCATGAAAAGGGCTTTGGCTTTAAGGGA...GCTTCCACCGCATCATCCCCCAGTTCATGTGCCAGGGCGGTGATTTCACAAACCACAATGGCACTGGGGGCAAGTCCATCTATGGGAAGAAGTTCGATGAT...AACTTTATCCTCAAGCATACGGGACCAG___GTCTACTATCCATGGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTTCTTCCTGACATGTGACAAGACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13179 NFYC::PPIE ENSG00000066136.21::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2322 TRUE 898 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39741895:+ chr1:40157854-40229586:+ chr1:40207567:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(28%) |Pro_isomerase(100%),RRM_1(31%),RRM_5(39%),TGF_beta(100%) 1 0 1 1314 679 ENST00000467203.5 ENST00000495526.5 downstream upstream duplicates(1) GAAGGGAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GATGCTGCAGCAGCTATCGACAACATGGTATGGCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13180 NFYC::PPIE ENSG00000066136.21::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2322 TRUE 898 NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39752910:+ chr1:40157854-40229586:+ chr1:40218582:+ chr1:40734394 chr1:39746022 NA NA chr1:41200066 chr1:40211694 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(50%) |Pro_isomerase(59%),TGF_beta(100%) 0 1 0 1314 616 ENST00000447388.8 ENST00000324379.10 downstream upstream none TCaGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GTCTACTATCCATGGCCAACTCTGGCCCAAACACC...CAAGACAGACTGGCTGGATGGCAAGCATGTGGTGTTTGGAGAGGTCACCGAAGGCCTAGATGTCTTGCGGCAAATTGAG___GCCCAGGGCAGCAAGGgCGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13181 NFYC::RLF ENSG00000066136.21::ENSG00000117000.9 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ RLF ENSG00000117000.9 protein_coding + - chr1:40161387-40240921:+ chr1:40167359:- chr1:40627059-40706593:+ chr1:40633031:- chr1:40731699,chr1:40705662,chr1:40705661,chr1:40703063,chr1:40702921,chr1:40703045 chr1:40227809,chr1:40187839,chr1:40187840,chr1:40216960,chr1:40217245,chr1:40217388 NA NA chr1:41197371,chr1:41171334,chr1:41171333,chr1:41168735,chr1:41168593,chr1:41168717 chr1:40693481,chr1:40653511,chr1:40653512,chr1:40682632,chr1:40682917,chr1:40683060 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 2 2 1 1314 33 ENST00000467203.5 unknown downstream downstream duplicates(3),mismatches(1) CACAGCTTCTGCGCACCGCACGATACTGGGAGTCCAGGCGCCAAGGGAGGGGGAAGGGAAAAGGGGAAACGGTGCAAACGGCGTGGCCGCCATCTTGCTTGTGCCCCCGCTTCGCGCGCGCTCCGTTCTCCGTGACGCACACTTCCCCCTCCCCTCCGCCGCGCCTGGGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|TTTCTATTTAGATATCGCTAAAAAGAAGGCAGCGCAAGAAGAGAAGCTAATGCATTAAAAACTTCTTGAAATATATGAAAGAGGTAAGGCTCAAG...GCAAAGAGCCAGGTCATGTAGGACAGTATAGCTCAAG___GCCAAATAATACCCACCTGTGAGTCCAGTGTGACTGATGAGCCAACGGTCTGCAACCTCAAAACAGAAAGAAGGAGGtGGGTCCAtGATCTTGCCAACACTAAGATGTCAGAGGAGTAGGATCgAGCCATCAAgGAATGTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13182 SMAP2::RIMS3 ENSG00000084070.12::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40374223:+ chr1:40810522-40888998:+ chr1:40839895:+ RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40647842:- chr1:41086352-41131354:- chr1:41113514:- chr1:40399101,chr1:40401177 chr1:40660397,chr1:40656207 NA NA chr1:40864773,chr1:40866849 chr1:41126069,chr1:41121879 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Putative_GTPase_activating_protein_for_Arf(17%)|C2_domain(100%) ArfGap(24%)|C2(100%) 1 3 1 3308 213 ENST00000372718.8 ENST00000372684.8 downstream downstream none GCCGCGCCGAGGGGCTGCGGAGTGGGGGACGGACGCCCCCGACCCGGGAAGGGGCGTCCGGCGGGGCCGGAGGAGAGGGCTCTCCCCGCTCAGGAGGTGCCCCTGGGCGGGGGACCGGGAGTCCTCAACCCCGGACTGAGGCAGGGGTCTCTGGGGGCGAGGAGGGCGCGTCGCCC...GTGGATCGGTACCAGGCTGTCCTGGCCAACCTGCTGCTGGAGGAGGATAACAAGTTTTGTGCAGATTGCCAGTCTAAAG|ACCCTTTTATCACATCGCCTCCTCTGGGAGCCTGCCCTGATTGCCTTCACCTCATTTCTTGAAcATTGGTGTTT...AGAAGTCAATTGAAGCCTTGTGCAAATGCCCTAGGGGTGTGCTGTTGGGAGGCAGCCCCCTGTGATGCGGAACACCAGGCTCAGATTCATCAGTTCG___AGCTGCC...CGGGGGCGGGGCTGGGgCCACCACCGCCAAGAAGCGGCGGAGCAGCCTGGGTGCCAAGATGGTGGCCATCGTGGGCCTGACTCAGTGGAGCAAGAGCACAC...CTGCGCAGCAACATCCGCCGGAGCACGGAGACAGGCATCGCGGTGGAGATGCGGAGCCGGGTCACACGCCAGGGCAGCCGGGAGTCCACCGATGGGAGCAC VDRYQAVLANLLLEEDNKFCADCQSK|dpfitspplgacpdclhlis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13187 RLF::HEYL ENSG00000117000.9::ENSG00000163909.8 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2324 TRUE 899 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39631579:- chr1:40089107-40105315:- chr1:40097251:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Hairy_Orange(100%),Helix-loop-helix_DNA-binding_domain(89%) |HLH(55%),Hairy_orange(100%) 1 0 1 2015 38 ENST00000372771.5 ENST00000372852.4 downstream downstream none CGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTG...CTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|ATCATAGAGAAACGGCGTCGAGACCGCATCAACAGTAGCCTTTCTGAATTGCGACGCTTGGTCCCCACTGCCTTTGAGAAACAG___GGCTCTTCCAAGCTGGAGAAAGCCGAGGTCTTGCAGATGACGGTGGAT SSLNYCRSFCQ|IIEKRRRDRINSSLSELRRLVPTAFEKQGSSKLEKAEVLQMTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13188 RLF::HEYL ENSG00000117000.9::ENSG00000163909.8 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2324 TRUE 899 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40195764:+ chr1:40627059-40706593:+ chr1:40661436:+ HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39627180:- chr1:40089107-40105315:- chr1:40092852:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Hairy_Orange(100%) |Hairy_orange(100%) 0 1 0 1525 21 ENST00000372771.5 ENST00000372852.4 downstream downstream none GAAAAACCCAGTTCTTCTTAAAATTCTGTCTCAACAGCCAGTAGAAACGGAGGAAG|GATTCTTTGATGCCCGAGCCCTGGCAGTTGACTTCCGGAGCATTG...GGTCCTTGAAGGGCCCAGCAGCCGTGCAGACCCCGTCCGGATTCGCCTTCTCTCCCACCTCAACAGCTACGCAGCCGAGATGGAGCCTTCGCCCACGCCC KNPVLLKILSQQPVETEE|gFFDARALAVDFRSI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13189 TRIT1::RIMS3 ENSG00000043514.17::ENSG00000117016.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2325 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40647842:- chr1:41086352-41131354:- chr1:41113514:- chr1:39880691 chr1:40656207 NA NA chr1:40346363 chr1:41121879 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none IPP_transferase(0%)|C2_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|C2(100%) 0 2 2 12633 213 ENST00000316891.10 ENST00000372684.8 upstream downstream duplicates(2),mismatches(1) GGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGCAG|ACCCTTTTATCACATCGCCTCCT[c]CTGGGAGCCTGCCCTGATTGCCTTCACC...GCAGAAGTCAATTGAAGCCTTGTGCAAATGCCCTAGGGGTGTGCTGTTGGGAGGCAGCCCCCTGTGATGCGGAACACCAGGCTCAGATTCATCAGTTCG___AGCTGCCTGAGGCCCTGCCACCCCGGGGACCATGTTTAACGGGGAGCCAGGTCCTGCCTCATCTG AAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|tllshrlllgacpdclh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13191 RIMS3::TRIT1 ENSG00000117016.10::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40647668:- chr1:41086352-41131354:- chr1:41113340:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39850261:- chr1:40303782-40349183:- chr1:40315933:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |IPP_transferase(52%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(8%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 1 246 25615 ENST00000372684.8 ENST00000489945.5 upstream downstream duplicates(1) CTGGGAGCCTGCCCTGATTGCCTTCACCTCATTTCTTGAAAATTGGTGTTTTGGCAGAAGTCAATTGAAGCCTTGTGCAAATGCCCTAGGGGTGTGCT...CGGAACACCAGGCTCAGATTCATCAGTTCG|GAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTaCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCCTTGGAGGTCCTCTGAAGTTCTCTAACCCTTGCATCCTTTGGCTTCATGCTGACCAG___TTCTAGATGAGCGCTTGGATAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13192 RLF::HPCAL4 ENSG00000117000.9::ENSG00000116983.13 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2326 TRUE 900 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ HPCAL4 ENSG00000116983.13 protein_coding - - chr1:39678648-39691485:- chr1:39684611:- chr1:40144320-40157157:- chr1:40150283:- chr1:40181299 chr1:39686250 NA NA chr1:40646971 chr1:40151922 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none |EF-hand_domain_pair(100%),EF_hand(100%) |EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%) 1 0 2 2015 66 ENST00000372771.5 ENST00000612703.3 downstream downstream mismatches(1) GGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGG...CCGGAGCTTCTGCCAG|GCCCCGCCATGGGGAAGACCAACAGCAAGCTGGCCCCCGAGGTGCTGGAGGACCTTGTTCAGAACACTGAGTTCAGCGAGCAGGA...GGTACAAGGGCTTCCTGAAGGACTGCaCCAGCGGCATCCTCAACCTGGAGGAGTTTCAGCAGCTCTACATCAAG___GCAATCTACAAGATGGTGGGCACCGTG RSFCQ|appwgrptaswpprcwrtlfrtlssasr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13193 RLF::HPCAL4 ENSG00000117000.9::ENSG00000116983.13 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2326 TRUE 900 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ HPCAL4 ENSG00000116983.13 protein_coding - - chr1:39678648-39691485:- chr1:39682733:- chr1:40144320-40157157:- chr1:40148405:- chr1:40181299 chr1:39686250 NA NA chr1:40646971 chr1:40151922 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |EF-hand_domain_pair(77%),EF_hand(68%) |EF-hand_1(57%),EF-hand_5(27%),EF-hand_6(50%),EF-hand_7(10%),EF-hand_8(8%) 0 1 0 2015 189 ENST00000372771.5 ENST00000612703.3 downstream downstream duplicates(1),mismatches(1) GTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGgAGCGGGAGCCGGAGAgGGAGcCGAGACTGAGgCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCG...AGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GCAATCTACAAGATGGTGGGCACCGTGATCATGATGCGCATGAACCAGGACGGGCTCACGCCCCAGCAGCGTGTGGACAAGATCTTCAAGAAGATGGACCAGGATAAGGACGACCAGATTACATTGGAGGAGTTCAAGGAGGCAG LREQEVSEVSSLNYCRSFCQ|AIYKMVGTVIMMRMNQDGLTPQQRVDKIFKKMDQDKDDQITLEEFKEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13194 SMAP2::PPIE ENSG00000084070.12::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2327 TRUE 901 SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40374223:+ chr1:40810522-40888998:+ chr1:40839895:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39748903:+ chr1:40157854-40229586:+ chr1:40214575:+ chr1:40381565,chr1:40381559,chr1:40381567,chr1:40381568,chr1:40381559,chr1:40381566,chr1:40381560,chr1:40381562,chr1:40381561 chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701577,chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701575 NA NA chr1:40847237,chr1:40847231,chr1:40847239,chr1:40847240,chr1:40847231,chr1:40847238,chr1:40847232,chr1:40847234,chr1:40847233 chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167249,chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167247 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Putative_GTPase_activating_protein_for_Arf(17%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(84%) ArfGap(24%)|Pro_isomerase(80%),TGF_beta(100%) 2 0 1 3308 555 ENST00000372718.8 ENST00000356511.6 downstream upstream none GCGTCCGGCACCCAGGAGGCTCGTGGTCCGCCTTTGCCTGGGCTGAGGGTCTCTGGCCCCGCAGCCTCTCTTGGAGGCGGGCCTGTCCCTAAGCCCGCCAA...GCGCCGAGGGGCTGCGGAGTGGGGGACGGACGCCCCCGACCCGGGAAGGGGCGTCCGGCGGGGCCGGAGGAGAGGGCTCTCCCCGCTCAGGAGGTGCCCCT...CCGGACTGAGGCAGGGGTCTCTGGGGGCGAGGAGGGCGCGTCGCCCTCTGCCCCCGCCGGCACCCTGGCCATGACAGGCAAGTCGGTGAAGGACGTGGATC...ACCAGGCTGTCCTGGCCAACCTGCTGCTGGAGGAGGATAACAAGTTTTGTGCAGATTGCCAGTCTAAAG|AGAATTTCCGCTGCCTGTGCACTCATGAAAAGGGCTTTGGCTTTAAGGGAAGCAGCTTCCAC QAVLANLLLEEDNKFCADCQSK|eNFRCLCTHEKGFGFKGSSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13195 SMAP2::PPIE ENSG00000084070.12::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2327 TRUE 901 SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40374223:+ chr1:40810522-40888998:+ chr1:40839895:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39735468:+ chr1:40157854-40229586:+ chr1:40201140:+ chr1:40381565,chr1:40381559,chr1:40381567,chr1:40381568,chr1:40381559,chr1:40381566,chr1:40381560,chr1:40381562,chr1:40381561 chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701577,chr1:39701575,chr1:39701575,chr1:39701575,chr1:39701575 NA NA chr1:40847237,chr1:40847231,chr1:40847239,chr1:40847240,chr1:40847231,chr1:40847238,chr1:40847232,chr1:40847234,chr1:40847233 chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167249,chr1:40167247,chr1:40167247,chr1:40167247,chr1:40167247 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Putative_GTPase_activating_protein_for_Arf(17%)|Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) ArfGap(24%)|Pro_isomerase(100%),RRM_1(100%),RRM_5(100%),TGF_beta(100%) 1 0 1 3308 63 ENST00000372718.8 ENST00000470018.5 downstream upstream none CCGAGGGGCTGCGGAGTGGGGGACGGACGCCCCCGACCCGGGAAGGGGCGTCCGGCGGGGCCGGAGGAGAGGGCTCTCCCCGCTCAGGAGGTGCCCCTGGG...CCGGACTGAGGCAGGGGTCTCTGGGGGCGAGGAGGGCGCGTCGCCCTCTGCCCCCGCCGGCACCCTGGCCATGACAGGCAAGTCGGTGAAGGACGTGGATC...ACCAGGCTGTCCTGGCCAACCTGCTGCTGGAGGAGGATAACAAGTTTTGTGCAGATTGCCAGTCTAAAG|GCACCCCAGCCTGCTGTCCATGTGCAGGCCAG QAVLANLLLEEDNKFCADCQSK|gtpaccpcag NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13196 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2328 TRUE 902 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40230604 chr1:39864131 NA NA chr1:40696276 chr1:40329803 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 1 0 2 2015 13654 ENST00000372771.5 ENST00000316891.10 downstream downstream none CGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTC...CGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGC...GGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCG EVSSLNYCRSFCQ|VYEGLDIITNKVSAQEQRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13197 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2328 TRUE 902 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844218:- chr1:40303782-40349183:- chr1:40309890:- chr1:40230604,chr1:40174141,chr1:40174272 chr1:39864131,chr1:39856352,chr1:39856179 NA NA chr1:40696276,chr1:40639813,chr1:40639944 chr1:40329803,chr1:40322024,chr1:40321851 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 2015 30150 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(1) GAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATG...GCAG___CGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGATGCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCC REQEVSEVSSLNYCRSFCQ|GHKPTATPIKMPYN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13198 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2328 TRUE 902 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844640:- chr1:40303782-40349183:- chr1:40310312:- chr1:40230604,chr1:40174141,chr1:40174272 chr1:39864131,chr1:39856352,chr1:39856179 NA NA chr1:40696276,chr1:40639813,chr1:40639944 chr1:40329803,chr1:40322024,chr1:40321851 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 1 0 0 2015 29600 ENST00000372771.5 ENST00000316891.10 downstream downstream none GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTC...GTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GACCTGGTCCCATTGTCCCCCC WQLETELREQEVSEVSSLNYCRSFCQ|dlvplsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13202 NFYC::NT5C1A ENSG00000066136.21::ENSG00000116981.4 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2330 FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ NT5C1A ENSG00000116981.4 protein_coding - - chr1:39651229-39672107:- chr1:39661263:- chr1:40116901-40137779:- chr1:40126935:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |5'-nucleotidase(61%) |5-nucleotidase(30%) 0 1 0 1314 23 ENST00000447388.8 ENST00000235628.2 downstream downstream none GGCCTCTGCATTGCCCGACTCCGTAGGAGCGCGGGGGCGGCTCCTGCTCTTCCTGGACTCCTGAGCAGAG|GGATCGCAGCTGCCACCATCTTCAGCCCCAG...CCTTCGATGGGGACGCCGTGCTCTTCTCGGACGAGTCGGAGCGCATCGTCAAGGCCCACGGGCTGGACCGATTCTTCGAGCATGAGAAGGCCCACGAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13203 RLF::ENSG00000284719 ENSG00000117000.9::ENSG00000284719.3 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2331 TRUE 903 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40202614:+ chr1:40627059-40706593:+ chr1:40668286:+ ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39804878:+ chr1:40265091-40275122:+ chr1:40270550:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 1 1657 331 ENST00000372771.5 ENST00000687094.1 downstream upstream duplicates(2) CTGCATCCCCCAtGCTACTGCTTTATCAAAACTATGTGCAGAATCTAAAGAAATTTCAAATGTGTCATCTTTTCAGCAAGCCTATATCACATGTTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGA|t|ATCCATTATTTATTCTTCTCCATCTTGTTCTGTGTTCCTGGAAGCCAACCTTTATAAGCTGCAGGAAATGGATTTCCTACTCTCCACCTTCTGATTGGGCTTGACCAACGGGGAGCACTGGCAGAAGACAA CIPhATALSKLCAESKEISNVSSFQQAYITCLCSMLPNEDAIKd|ihylffsilfcvpgsqpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13204 RLF::ENSG00000284719 ENSG00000117000.9::ENSG00000284719.3 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2331 TRUE 903 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40190853:+ chr1:40627059-40706593:+ chr1:40656525:+ ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39804878:+ chr1:40265091-40275122:+ chr1:40270550:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 1 0 1733 331 ENST00000372771.5 ENST00000687094.1 downstream upstream duplicates(1) GTTTCGAATTACTGCTTTCAGTGTCTGAAAGTGAACTGCCATGTGAAGTCTGGCTACCATTCCTagAGTCTCTACAG|ATCCATTATTTATTCTTCTCCATCTTGTTCTGTGTTCCTGGAAGCCAACCTTTATAAGCTGCAGGAAATGGATTTCCTACTCTCCACCTTCTGATTGGGCTTGACCAACGGGGAGCAC FELLLSVSESELPCEVWLPFLeSLQ|ihylffsilfcvpgsqpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13205 RLF::EXO5-DT ENSG00000117000.9::ENSG00000238287.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2332 TRUE 904 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40202614:+ chr1:40627059-40706593:+ chr1:40668286:+ EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40493688:- chr1:40958829-40974333:- chr1:40959360:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 1 1657 544 ENST00000372771.5 ENST00000450713.1 downstream downstream duplicates(1) GAAAAACCCAGTTCTTCTTAAAATTCTGTCTCAACAGCCAGTAGAAACGGAGGAAG___TCAATAAATTGATTGCACAAGAAGGACCTTCCTTTCTGCAAATGC...TTTCAAATGTGTCATCTTTTCAGCAAGCCTATATCACATGTTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGAG|GTCCCTGATTCTGGTCTTGAA...GAAGCCATTTATGCATCCCTCCCTAATTCAGTATCCGAGCATGAGGGAGTGTCAAGCTAGTGGGGAAGAAGAGAGGGTTTAGTTTTGAATGAAGTTGGGAG SNVSSFQQAYITCLCSMLPNEDAIKE|vpdsgl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13206 RLF::EXO5-DT ENSG00000117000.9::ENSG00000238287.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2332 TRUE 904 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40190853:+ chr1:40627059-40706593:+ chr1:40656525:+ EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40493688:- chr1:40958829-40974333:- chr1:40959360:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 1 0 0 1733 544 ENST00000372771.5 ENST00000450713.1 downstream downstream duplicates(2) GTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG___ACCTTATTGCAATATGCAAGCAACAAGAATGCATCAGAACATATTGTGTATCTTCTGG...CTGAAAGTGAACTGCCATGTGAAGTCTGGCTACCATTCCTTCAGTCTCTACAG|GTCCCTGATTCTGGTCTTGAATAGCGGAGGAGGAAAAGAAGATGAcGG ESELPCEVWLPFLQSLQ|vpdsgle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13208 HPCAL4::TRIT1 ENSG00000116983.13::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2333 FALSE NA HPCAL4 ENSG00000116983.13 protein_coding - - chr1:39678648-39691485:- chr1:39691306:- chr1:40144320-40157157:- chr1:40156978:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |IPP_transferase(35%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 0 2 0 52 25486 ENST00000612703.3 ENST00000316891.10 upstream downstream none GGCCCGCGAGCCAGCCTCGGTTCCCGCGGCCCGCCGAGGCTCGGAGCCATCCAGCGACCCGGCGACCGGCCTCAG|TTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCT...TCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAG___CCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTG...TATCTGtTGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAAcCGcGCAAcGTTTCATCCAG___GGCCACAAGCCTACAGCCACTCCAATAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13215 ENSG00000289258::BMPR1A ENSG00000289258.1::ENSG00000107779.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000289258 ENSG00000289258.1 protein_coding + + chr10:86654518-86700020:+ chr10:86692571:+ chr10:88414275-88459777:+ chr10:88452328:+ BMPR1A ENSG00000107779.15 protein_coding + + chr10:86756596-86932825:+ chr10:86875867:+ chr10:88516353-88692582:+ chr10:88635624:+ chr10:86693085,chr10:86693153,chr10:86693151 chr10:86863888,chr10:86863888,chr10:86863883 NA NA chr10:88452842,chr10:88452910,chr10:88452908 chr10:88623645,chr10:88623645,chr10:88623640 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Activin_types_I_and_II_receptor_domain(100%),Protein_kinase_domain(100%),Transforming_growth_factor_beta_type_I_GS-motif(100%) 7TM_GPCR_Srsx(100%),7tm_1(100%),DUF4749(100%),PDZ(100%)|Activin_recp(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),TGF_beta_GS(100%) 1 1 7 20 16 ENST00000443292.2 ENST00000638429.1 downstream upstream duplicates(3),mismatches(2) GCCGTAGACAGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAAGATGAGGCTGACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGATGACGGGGACAGAATTCA___TGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCAAG|GAGTCGTAAGAAAGCAGTGGGAGTTGAAGTCATTGTCAAGTGCTTGCGATCTTTTACAAGAAAATCTCACTGAATGATAGTCATTTAAATTGGTGAAGTAGCAAGACCAATTATTAAAGGTGACAGTACACAGGAAACATTACAATTGAACAATGCCTCAGCTATACATTTACATCAGATTATTGGGAGCCTATTTGTTCATCATTTCTCGTGTTCAAG___GACAGAATCTGGATAGTATGCTTCATGGCACTGGGATGAAATCAGACTCCGACCAGAAAAAGTCAGAAAATGGAGTAACCTTAGCACCAG AVDSASPVYQAVIKSQNKPEDEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSr|srkkavgvevivkclrsftrksh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Bone morphogenetic protein receptor type-1A TKL STKR STKR1 P36894 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bone morphogenetic protein receptor, type IA 1 Yes gastrointestinal polyps juvenile polyposis epithelial oncogene, TSG missense, nonsense, frameshift 13233 ENSG00000197585::SPAG16 ENSG00000197585.10::ENSG00000144451.20 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000197585 ENSG00000197585.10 lncRNA - - chr2:214241676-214684246:- chr2:214436192:- chr2:215106400-215548970:- chr2:215300916:- SPAG16 ENSG00000144451.20 protein_coding + - chr2:213284389-214410501:+ chr2:214175599:- chr2:214149113-215275225:+ chr2:215040323:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron deletion/read-through/5'-5' low none none none 0 1 2 6 1 ENST00000412896.5 unknown upstream downstream none ATTGCTCTGACCTCCTCTCGTAAACAGGCATTCTACTGGAACGTGTAAGATAATTTTTGCCATCTGTCATTTTCTTCTTCTTGAGAAAGGAGGAGAATTACTGAGAAACAAGAAAATG|GTGTCTTCCCATGTC...TCTTAGAGGACTGTCAATCAAGATACCCCGATCTCCACTAGCCAAGAGGAAGTGCgCTGCTAATCAGATGTTCTTTTCTTTAATTCAAATCTTGAATGGAATAACACCTGGACAGAAAGTGGCTAGAGCCATCTCATCTTGAGATGAGACGTACTCATGTTGACAGTACTCAGAAGACCACATTCATCAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13242 SOX21-AS1::GPC6 ENSG00000227640.5::ENSG00000183098.12 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX21-AS1 ENSG00000227640.5 lncRNA + + chr13:94703454-94803430:+ chr13:94764551:+ chr13:95355708-95455684:+ chr13:95416805:+ GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:94286349:+ chr13:93879060-95060274:+ chr13:94938603:+ chr13:94770405,chr13:94770405 chr13:94263455,chr13:94263450 NA NA chr13:95422659,chr13:95422659 chr13:94915709,chr13:94915704 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Glypican(47%) |Glypican(9%) 1 0 1 5 71 ENST00000665450.1 ENST00000377047.9 downstream upstream none CAGATGTTTCCCTCCAGGGCTCTGCTTTAAGTCG___AGGAGAAAATATATAATAGAGCCTGAAGATGTAGTTGTATTGCTTCAGTCTCATGATAAAACTTGAGTGGATGAGGAGTTGCTTCTTATGAACGAGCAAAGAAAGTGGTTACGTGAGAGGGAATCTACTCCTAATGAAGATCCT|ATGCAATGCTCTTGGTGGCAGAGCGACTGGAGGGGCCATTCAACATTGAGTCGGTCATGGACCCGATAGATGTCAAGATTTCTGAAGCCATTATGAACATGCAAGAAAACAGCATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13255 MKLN1::CHCHD3 ENSG00000128585.18::ENSG00000106554.13 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2339 FALSE NA MKLN1 ENSG00000128585.18 protein_coding + + chr7:131110096-131496632:+ chr7:131327997:+ chr7:130794855-131181391:+ chr7:131012756:+ CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:132885745:- chr7:132469631-132766850:- chr7:132570505:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Muskelin_N-terminus(11%)|MICOS_complex_subunit_MIC19/MIC25(32%) F5_F8_type_C(0%),Muskelin_N(0%)|MIC19_MIC25(20%) 0 1 0 139 1152 ENST00000352689.11 ENST00000262570.10 downstream downstream duplicates(1) GCGCTACACAAGTGGAGCTCCTTTTCCTCCACCTACCTTCCCGA|GCTAGGCAGCTGGAAGAGAAAGACCGAGTGCTAAAGAAGCAGGATGCATTCTACAAA...TCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAA___GCGATATGAGTCTCATCCAtTaTGTGCTGATCTGCAGGCCAAAATTCTTCAGTGTTACCGTGAGA ALHKWSSFSSTYLPe|lgswkrktec* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13258 NRDE2::CALM1 ENSG00000119720.18::ENSG00000198668.14 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1318 FALSE NA FALSE NA NRDE2 ENSG00000119720.18 protein_coding - - chr14:90267860-90331969:- chr14:90286354:- chr14:90734204-90798313:- chr14:90752698:- CALM1 ENSG00000198668.14 protein_coding + + chr14:90396502-90408268:+ chr14:90400065:+ chr14:90862846-90874612:+ chr14:90866409:+ chr14:90284657,chr14:90284657,chr14:90284659 chr14:90397109,chr14:90397114,chr14:90397107 NA NA chr14:90751001,chr14:90751001,chr14:90751003 chr14:90863453,chr14:90863458,chr14:90863451 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none NRDE-2__necessary_for_RNA_interference(100%)|EF-hand_domain_pair(100%),EF_hand(100%) NRDE-2(100%)|EF-hand_1(100%),EF-hand_4(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),EF-hand_9(100%),EFhand_Ca_insen(100%) 14 9 24 93 3655 ENST00000354366.8 ENST00000356978.9 upstream upstream duplicates(13),low_entropy(1),mismatches(1) CAAACCCTTGGAGCCTTGGTTGTTTGCAATTGAAGCTGAGAAACTGAGGAAGAGACTGGTGGAAACTGTCCAGAG___GTTAGACGGTAGAGAGATCCACGCCACAATTCCTGAGACCGGCTTAATGCATCGGATCCAAGCCCTGTTTGAAAATGCCATGCGCAGCGACAGTGGCAGCCAGTGCCCCTTGCTGTGGAGGATGTATTTGAACTTTCTG|GCTGATCAGCTGACCGAAGAACAGATTGCTG___AATTCAAGGAAGCCTTCTCCCTATTTGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGGAACTGTCATGAGGTCACTGGGTCAGAACCCAACAGAAGCTGAATTGCAGGATATGATCAATGAAGTGGATGCTGATG___GTAATGGCACCATTGACTTCCC KPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFL|ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13260 R3HDM2::ARHGAP9 ENSG00000179912.21::ENSG00000123329.20 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1320 TRUE 2340 TRUE 905 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430720:- chr12:57647545-57824826:- chr12:57824503:- ARHGAP9 ENSG00000123329.20 protein_coding - - chr12:57472264-57488814:- chr12:57480834:- chr12:57866047-57882597:- chr12:57874617:- chr12:57410485,chr12:57410502 chr12:57483599,chr12:57483611 NA NA chr12:57804268,chr12:57804285 chr12:57877382,chr12:57877394 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |PH_domain(100%),RhoGAP_domain(100%),SH3_domain(100%) |PH(100%),RhoGAP(100%),SH3_1(100%),WW(100%) 2 27 0 116 136 ENST00000402412.6 ENST00000393797.7 upstream downstream duplicates(2) CGAGCCGCAGCCGAGCGGCCGTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG|AAAGCCTCACATTGTGCAGTGGAGAAGCTGAGAGAAGAGGAAAAGAGGAGTGGCCAG___GTGACAGTGCTGGCTACAATGCTATCCAGCCGGTGGTGGCCAAGTTCCTGGGGGATCCTAGGGCTGGGCCCCCGAAGCCCTCCTCGGGGATCCCAGCTCTGTGCCCTCTATGCCTTTACTTATACTGGGGCAGATGGCCAGCAGGTGTCTCTGGCTGAAGGGGATAGGTTCCTACTGCTTCGAAAGACCAACTCCGACTGGTGGTTGGCAAGACGCCTAGAAGCTCCCTCCACCTCTCGACCCATCTTCGTCCCAGCAGCCTATATGATAGAGGAATCCATCCCTTCCCAGAGTCCAACTACCGTCATCCCCGGCCAATTGCTCTGGACTCCTG___GGCCGAAGTTGTTTCATGGTTCCCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13261 R3HDM2::ARHGAP9 ENSG00000179912.21::ENSG00000123329.20 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2340 TRUE 905 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430009:- chr12:57647545-57824826:- chr12:57823792:- ARHGAP9 ENSG00000123329.20 protein_coding - - chr12:57472264-57488814:- chr12:57480843:- chr12:57866047-57882597:- chr12:57874626:- chr12:57410485,chr12:57410502 chr12:57483599,chr12:57483611 NA NA chr12:57804268,chr12:57804285 chr12:57877382,chr12:57877394 NA NA sense sense unknown intron intron duplication medium none |PH_domain(100%),RhoGAP_domain(100%),SH3_domain(100%) |PH(100%),RhoGAP(100%),SH3_1(100%),WW(100%) 21 17 13 60 114 ENST00000402412.6 ENST00000393797.7 upstream downstream duplicates(7) CCAAGGCCCGTGCGAG___AGCTAACATTTTTCAACATTTGTGGCCATTAAGTCTCGGAACTACCAGGAATACTGACTTAGAGTGAATTGTCATTGGATAATGATGAGAAATGACCGAATAACAATCCCAGAACTGCGTTAAAACGGAAGAAAGAAAAGTGGAAAAGTTTGAATTCAGATCCCAGTTGGATGAA|CCCAAACAGAAAGCCTCACATTGTGCAGTGGAGAAGCTGAGAGAAGAGGAAAAGAGGAGTGGCCAG___ACTCCCACC...___GTGACAGTGCTGGCTACAATGCTATCCAGCCGGTGGTGGCCAAGTTCCTGGGGGATCCTAGGGCTGGGCCCCCGAAGCCCTCCTCGGGGATCCCAGCTCTGTGCCCTCTATGCCTTTACTTATACTGGGGCAGATGGCCAGCAGGTGTCTCTGGC...CTGGTGGTTGGCAAGACGCCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13262 R3HDM2::ARHGAP9 ENSG00000179912.21::ENSG00000123329.20 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2340 TRUE 905 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430720:- chr12:57647545-57824826:- chr12:57824503:- ARHGAP9 ENSG00000123329.20 protein_coding - - chr12:57472264-57488814:- chr12:57479424:- chr12:57866047-57882597:- chr12:57873207:- chr12:57410485,chr12:57410502 chr12:57483599,chr12:57483611 NA NA chr12:57804268,chr12:57804285 chr12:57877382,chr12:57877394 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |PH_domain(100%),RhoGAP_domain(100%),SH3_domain(100%) |PH(100%),RhoGAP(100%),SH3_1(100%),WW(100%) 0 6 0 116 181 ENST00000402412.6 ENST00000393797.7 upstream downstream duplicates(3) CGGGGCCGAGCCGCAGCCGAGCGGCCGTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG|GTGACAGTGCTGGCTACAATGCTATCCAGCCGGTGGTGGCCAAGTTCCTGG...CTGGGCCCCCGAAGCCCTCCTCGGGGATCCCAGCTCTGTGCCCTCTATGCCTTTACTTATACTGGGGCAGATGGCCAGCAGGTGTCTCTGGCTGAAGGGGATAGGTTCCTACTGCTTCGAAAGACCAACTCCGACTGGTGGTTGGCAAGACGCCTAGAAGCTCCCTCCACCTCTCGACCCATCTTCGTCCCAGCAGCCTATATGATAGAGGAATCCATCCCTTCCCAGAGTCCAACTACCGTCATCCCCGGCCAATTGCTCTGGACTCC...CCCTGTGTACTGTAACCTGGTGGACCTTCGCCGCTGTCCTCGGTCCCCACCCCCAGGCCCTGCATGCCCCCTGCTGCAGAGGCTGGATGCCTGGGAGCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13263 R3HDM2::ARHGAP9 ENSG00000179912.21::ENSG00000123329.20 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2340 TRUE 905 R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430720:- chr12:57647545-57824826:- chr12:57824503:- ARHGAP9 ENSG00000123329.20 protein_coding - - chr12:57472264-57488814:- chr12:57479788:- chr12:57866047-57882597:- chr12:57873571:- chr12:57410485,chr12:57410502 chr12:57483599,chr12:57483611 NA NA chr12:57804268,chr12:57804285 chr12:57877382,chr12:57877394 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |PH_domain(100%),RhoGAP_domain(100%),SH3_domain(100%) |PH(100%),RhoGAP(100%),SH3_1(100%),WW(100%) 0 1 0 116 84 ENST00000402412.6 ENST00000393797.7 upstream downstream none GTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG|ACTCCCACCACTACCCAGGACCAACTCCTGCTCCTGAATCTTCT...GGCCAAGTTCCTGGGGGATCCTAGGGCTGGGCCCCCGAAGCCCTCCTCGGGGATCCCAGCTCTGTGCCCTCTATGCCTTTACTTATACTGGGGCAGATGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13269 C1orf52::DDAH1 ENSG00000162642.14::ENSG00000153904.21 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C1orf52 ENSG00000162642.14 protein_coding - - chr1:85249953-85259672:- chr1:85258524:- chr1:85715636-85725355:- chr1:85724207:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85256893,chr1:85256897 chr1:85412086,chr1:85412087 NA NA chr1:85722576,chr1:85722580 chr1:85877769,chr1:85877770 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none Domain_of_unknown_function_(DUF4660)(100%)|Arginine_deiminase(65%) DUF4660(100%)|ADI(7%),DDAH_eukar(7%) 4 10 12 476 435 ENST00000294661.8 ENST00000284031.13 upstream downstream low_entropy(1),mismatches(2) GCAGCCTCCTGAAGGGGTCAGCCTTGGCGTAGTATCTCTGAGACTGGATTCTTCTTTG___CCTCCAAAGGAATTCAAAATATGGAAGTCAAATTATGTACCACCTCCTGAGACCTACACCACTGAGAAGAAGCCTCCGCCTCCAGAGCTTGACATGGCAATAAAATGGTCTAACATATATGAGGACAATGGTGATGATGCTCCACAGAATGCTAAGAAAGCTAGGCTTCTACCAGAAGGGGAGGAGACGTTGGAATCAG|GTTGACATGATGAAAGAAGCATTAGAAAAACTTCAGCTCAATATAGTAGAGATGAAAGATGAAAATGCAACTTTAGATGGCGGAGATGTTTTATTCACAG___GCAGAGAATTTTTTGTGGGCCTTTCCAAAAGGACAAATCAACGAGGTGCTGAAATCTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13277 DNM1::SLC25A25-AS1 ENSG00000106976.22::ENSG00000234771.3 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNM1 ENSG00000106976.22 protein_coding + + chr9:128191655-128255248:+ chr9:128250940:+ chr9:130953934-131017527:+ chr9:131013219:+ SLC25A25-AS1 ENSG00000234771.3 lncRNA - + chr9:128108581-128118693:- chr9:128109857:+ chr9:130870860-130880972:- chr9:130872136:+ chr9:128252149,chr9:128252147 chr9:128109315,chr9:128109310 NA NA chr9:131014428,chr9:131014426 chr9:130871594,chr9:130871589 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Dynamin_GTPase_effector_domain(100%),Dynamin_central_region(100%),Dynamin_family(100%),PH_domain(100%)| Dynamin_M(100%),Dynamin_N(100%),GED(100%),PH(100%)| 2 5 3 110 102 ENST00000341179.11 unknown downstream upstream duplicates(3),mismatches(2) CCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCTTTCGGCCCTCCCCCTCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG|GGCAGTCCACCAGCAAATACCGTCAGCCCCACCCGCAAAAcAGATCTGCTCTCTGGCCGCTTCTCCCGACCTCCACCCCTGCCACTGATCAAAGACAATATCATGTCTCACCTGGATGATTGCAAGACCTAAACTTCTTCCCCCTGCTTCCCTTCACTCTCCACCCCAAGACCAAGGGGCCCTTTGAAAACCTAAGTGGATAGCCAGGTGTGATGACAG RPGSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPGVPr|avhqqipsappakqicslaaspdlhpch* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13278 FAM66B::PCAT1 ENSG00000215374.6::ENSG00000253438.5 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FAM66B ENSG00000215374.6 lncRNA - - chr8:7298744-7355359:- chr8:7349083:- chr8:7156266-7212881:- chr8:7206605:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126713286:+ chr8:127568568-128431295:+ chr8:127725531:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 1 2 45 7 ENST00000664195.1 ENST00000645463.1 upstream upstream duplicates(1) TGGAGGACCCGGGCTACGGGGCTCCGGGGCGTCTGGCCTGGTTGGGACTGAGCCCATCCAGGGACTGGGACTCTGGGATTCTGGTGTAGGTGGATCCGGGG...TTCCAACTGGATGTCTGGATGAACTACTGAAAGCTGCTGAGTGTCCTGCAGCAG|GTCCCATACAGAGAGAAGAAACAGACAACCTGAATCACATTCAAAAGAGAGTCTCCACAATAGTGAG...TTACATAGATTTGTTTAACCTAAGGAAGAAAAGATTCTGGACACGTGAGGGCCGATTTTCATTCCTCAGAGCTCTCTCCTTTGGAGGCTTCTTTGTTTGGGCCCCACTTCCATTCTTCACATTCAGCAGTTACTGGGAGACGACCTTACCgTGGCCTGTCCCTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13279 MIR99AHG::LINC00945 ENSG00000215386.15::ENSG00000232539.1 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2343 TRUE 906 MIR99AHG ENSG00000215386.15 lncRNA + + chr21:15928296-16646364:+ chr21:16391685:+ chr21:17300616-18018683:+ chr21:17764005:+ LINC00945 ENSG00000232539.1 lncRNA + + chr21:33057829-33064983:+ chr21:33062792:+ chr21:34430135-34437289:+ chr21:34435098:+ chr21:16423357 chr21:33058944 NA NA chr21:17795677 chr21:34431250 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 0 1 3 57 9 ENST00000653129.1 ENST00000453716.1 downstream upstream mismatches(1) GAATTTTACTGGGATAATTATCCAAATAAATTGCAAGCATTCTATCCAAATG___GAGCTCTTTCTGAGATGAAGAGAATTCTCAATGTCAAGATTTGAACAAGAAGAGAATGGAATACACAATATG|ATAGAGGAAACTGAGGTACTGACAG___GTCAGAGCGCCTCCGAGAGAAAAAGGCGGTGGCCTTGGAGCTCTGGTCTCCTTAACTGCACCCTGGGAAGTCTTCACACGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13280 MIR99AHG::LINC00945 ENSG00000215386.15::ENSG00000232539.1 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2343 TRUE 906 MIR99AHG ENSG00000215386.15 lncRNA + + chr21:15928296-16646364:+ chr21:16419741:+ chr21:17300616-18018683:+ chr21:17792061:+ LINC00945 ENSG00000232539.1 lncRNA + + chr21:33057829-33064983:+ chr21:33062792:+ chr21:34430135-34437289:+ chr21:34435098:+ chr21:16423357 chr21:33058944 NA NA chr21:17795677 chr21:34431250 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 0 1 3 7 9 ENST00000663412.1 ENST00000453716.1 downstream upstream mismatches(1) GAAACTTTTTGATCTGCAGAAAAGCCAGAAGACATCTAG|ATAGAGGAAACTGAGGTACTGACAG___GTCAGAGCGCCTCCGAGAGAAAAAGGCGGTGGCCTTGGAGCTCTGGTCTCCTTAACTGCACCCTGGGAAGTCTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13297 WDR89::ENSG00000274015 ENSG00000140006.12::ENSG00000274015.3 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDR89 ENSG00000140006.12 protein_coding - - chr14:63597039-63641871:- chr14:63641804:- chr14:64063757-64108589:- chr14:64108522:- ENSG00000274015 ENSG00000274015.3 lncRNA + + chr14:63642035-63665593:+ chr14:63651332:+ chr14:64108753-64132311:+ chr14:64118050:+ chr14:63641443 chr14:63650919 NA NA chr14:64108161 chr14:64117637 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 0 4 0 21 15 ENST00000620954.2 ENST00000668431.1 upstream upstream hairpin(1) CCGCAAACCATGAGGAAGAGGCACAGCATTCTCTTCTGAGCCTGAAGCCAGCTCTTCTTGCTTCACTGCCATTTGCCCTTCATGATCATTCTCTTCCT...CTTGACCGCTCTAAGCCGCCGCGCAGCCTGCGTTTTCTCCGGTACAGGTTGAGGCTACTAAG|GAAGAGAATGATCATGAAGGGCAAATGGCAGTGAAGCAAGAAGAGCTGGCTTCAGGCTCAGAAGAGAATGCTGTGCCTCTTCCTCATGGTTTGCGGTGCCCTGCATGTTCAGAGAAACTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13311 ENSG00000279881::MX1 ENSG00000279881.1::ENSG00000157601.15 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000279881 ENSG00000279881.1 TEC - - chr8:48428143-48431041:- chr8:48430459:- chr8:49340703-49343601:- chr8:49343019:- MX1 ENSG00000157601.15 protein_coding + + chr21:41420020-41470071:+ chr21:41440804:+ chr21:42791947-42841998:+ chr21:42812731:+ chr8:48430421,chr8:48430426 chr21:41440594,chr21:41440585 NA NA chr8:49342981,chr8:49342986 chr21:42812521,chr21:42812512 NA NA sense sense unknown exon intron translocation low none |Dynamin_GTPase_effector_domain(100%),Dynamin_central_region(100%),Dynamin_family(28%) |Dynamin_M(100%),Dynamin_N(16%),GED(100%) 0 0 3 15 4 ENST00000622926.1 ENST00000679386.1 upstream upstream none GTTTCTGCACAGAGCTACCAGCCCGGGCAGACACTGAGGACCCTCCTCGCGCACTGGAGCTGTGGCCTCGGCAGCTGTGGGAATGCGGACAGGAAGCAGGGGACCCTGGAGGCGAGAGGAGGAGGACATCCTGCGGGGATAGATAAAAAATAACGGCCGGGCTGTGG...|...AAGCAAGTGCAAGGTCAGGACTTGTCTCACCTCTCACTTGCCTTTGCCATACTCACGAGTCACCTCCTCTCATTTCCTTACAGATCAAGACACTCATCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13323 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1325 TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34614760:- chr21:35885440-35987412:- chr21:35987059:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calcipressin(4%)|Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(0%)|Runt(0%),RunxI(100%) 301 301 279 1816 2720 ENST00000313806.9 ENST00000300305.7 upstream downstream duplicates(119),low_entropy(1),mismatches(41),same_gene(1) GCCGAGGCGGACGAGGGCGGCGGCGACTGGAGCTTCATTGACTGCGAGATGGAGGAGGTGGACCTGCAGGACCTGCCCAGCGCCACCATCGCCTGTCACCTGGACCCGCGCGTGTTCGTGGACGGCCTGTGCCGG|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGCA AEADEGGGDWSFIDCEMEEVDLQDLPSATIACHLDPRVFVDGLCR|iqgrsnhphrgptisptntwdplplllctqqrpfhldvpaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 TRUE|TRUE|FALSE,TRUE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 TRUE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13324 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1326 TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34526663:- chr21:35885440-35987412:- chr21:35898961:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calcipressin(8%)|Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(85%)|Runt(0%),RunxI(100%) 301 139 300 992 2720 ENST00000381132.6 ENST00000300305.7 upstream downstream duplicates(85),mismappers(2),mismatches(44) ATCTCACTAGGGGCTTGACTGCGTGGGTCTGTAGCGCTTTCACTGTAAGAAAGCAAGATGCATTTTAGAAACTTTAACTACAGTTTTAGCTCCCTGATTGCCTGTGTGGCAAACAGTGATATCTTCAGCGAAAGTGAAACCAGG|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGA MHFRNFNYSFSSLIACVANSDIFSESETR|iqgrsnhphrgptisptntwdplplllctqqrpfhldvpaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 FALSE|FALSE|FALSE,FALSE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 FALSE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13325 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34614278:- chr21:35885440-35987412:- chr21:35986577:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none Calcipressin(4%)|Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(0%)|Runt(0%),RunxI(100%) 15 19 290 75 2720 ENST00000443408.6 ENST00000300305.7 upstream downstream duplicates(31),low_entropy(1),mismappers(1),mismatches(15),same_gene(1) GAATTCGCTCCCCAAGGTGGGGCAGCGCCGCCGCCCCCTGCGCTCTCGCCATCG...GGAGGAGGAAACAGACATTGAGCGGCGACGTGACTCAGTGTTCATAAATAGGACGACGTCCCTGCATTCCCAATCTGCACTATTGGAAGAAAAGCCAATGTTTGG|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 FALSE|FALSE|TRUE,FALSE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 FALSE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13326 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34613787:- chr21:35885440-35987412:- chr21:35986086:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Calcipressin(4%)|Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(0%)|Runt(0%),RunxI(100%) 1 4 290 28 2720 ENST00000399272.5 ENST00000300305.7 upstream downstream duplicates(31),mismatches(15),same_gene(1) TGTGGGTCCACAAATGCTGTCAATGAACTATAGTTGAAGGCTGCTGCCAATACAACACCACTGTGAAACAGAATGGTGTAT|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCG MVY|iqgrsnhphrgptisptntwdplplllctqqrpfhldvpaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 FALSE|FALSE|FALSE,FALSE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 FALSE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13327 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34614760:- chr21:35885440-35987412:- chr21:35987059:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34792610:- chr21:36160098-37376965:- chr21:36164907:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Calcipressin(4%)|Runx_inhibition_domain(100%) Calcipressin(0%)|RunxI(100%) 3 2 19 1816 3365 ENST00000313806.9 ENST00000300305.7 upstream downstream mismatches(1) TGCGGCCCTTCGCGCCCCTCTCGGGGGCGGCCGAGGCGGACGAGGGCGGCGGCGACTGGAGCTTCATTGACTGCGAGATGGAGGAGGTGGACCTGCAGGACCTGCCCAGCGCCACCATCGCCTGTCACCTGGACCCGCGCGTGTTCGTGGACGGCCTGTGCCGG|CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGCATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGGCATGTCGGCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGGCCCGTTCCAAGC RPFAPLSGAAEADEGGGDWSFIDCEMEEVDLQDLPSATIACHLDPRVFVDGLCR|rhpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 TRUE|TRUE|FALSE,TRUE 36171759|36164907|36171759,36253010 FALSE|TRUE|FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 TRUE 34799462 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13328 ENSG00000288711::RUNX1 ENSG00000288711.1::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2349 TRUE 908 ENSG00000288711 ENSG00000288711.1 protein_coding - - chr21:34511122-34614913:- chr21:34614760:- chr21:35883420-35987212:- chr21:35987059:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(0%)|Runt(0%),RunxI(100%) 301 301 215 1816 2720 ENST00000684114.1 ENST00000300305.7 upstream downstream duplicates(132),low_entropy(1),mismatches(38),same_gene(1) GCGGCGGCGACTGGAGCTTCATTGACTGCGAGATGGAGGAGGTGGACCTGCAGGACCTGCCCAGCGCCACCATCGCCTGTCACCTGGACCCGCGCGTGTTCGTGGACGGCCTGTGCCGG|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13329 ENSG00000288711::RUNX1 ENSG00000288711.1::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2349 TRUE 908 ENSG00000288711 ENSG00000288711.1 protein_coding - - chr21:34511122-34614913:- chr21:34526663:- chr21:35883420-35987212:- chr21:35898961:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Runt_domain(1%),Runx_inhibition_domain(100%) Calcipressin(85%)|Runt(0%),RunxI(100%) 301 139 300 992 2720 ENST00000684541.1 ENST00000300305.7 upstream downstream duplicates(88),mismappers(2),mismatches(40) TCTCACTAGGGGCTTGACTGCGTGGGTCTGTAGCGCTTTCACTGTAAGAAAGCAAGATGCATTTTAGAAACTTTAACTACAGTTTTAGCTCCCTGATTGCCTGTGTGGCAAACAGTGATATCTTCAGCGAAAGTGAAACCAGG|ATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAA___CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGA MHFRNFNYSFSSLIACVANSDIFSESETR|iqgrsnhphrgptisptntwdplplllctqqrpfhldvpaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13330 ENSG00000288711::RUNX1 ENSG00000288711.1::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2349 TRUE 908 ENSG00000288711 ENSG00000288711.1 protein_coding - - chr21:34511122-34614913:- chr21:34614760:- chr21:35883420-35987212:- chr21:35987059:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34792610:- chr21:36160098-37376965:- chr21:36164907:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none |Runx_inhibition_domain(100%) Calcipressin(0%)|RunxI(100%) 3 2 14 1816 3365 ENST00000684114.1 ENST00000300305.7 upstream downstream mismatches(1) AGGGCGGCGGCGACTGGAGCTTCATTGACTGCGAGATGGAGGAGGTGGACCTGCAGGACCTGCCCAGCGCCACCATCGCCTGTCACCTGGACCCGCGCGTGTTCGTGGACGGCCTGTGCCGG|CGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGCATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGGCATGTCGGCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGGCCCGTTCCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 13332 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50632408:+ chr16:50582307-50683160:+ chr16:50666319:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50300715:+ chr16:50280048-50352046:+ chr16:50334626:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Adenylate_and_Guanylate_cyclase_catalytic_domain(75%),Adenylate_cyclase__conserved_domain(100%) |DUF1053(100%),Guanylate_cyc(19%) 9 24 24 10421 1132 ENST00000268459.6 ENST00000394697.7 downstream upstream duplicates(2),mismatches(4) CCCACTGAGGACCTGCGGAGCTGGGAGAAGAAGCAGCGAGCCCCGCTCAG___GTTCCAGGGTGACAGCCGCCTGGAGCAGTCTGGCTGCTACCACCATTGCGTAGATGAGAACATCGAGAGGAGAAACCACTACTTAGATCTCGCCGGGATAGAAAACTACACGTCCCAATTTGGGCCTG|GCAGGTGCGGGAGGCCACGGGCGTGGACATCAACATGCGTGTGGGCATACACTCGGGGAATGTGCTGTGCGGGGTCATCGGGCTGCGCAAGTGGCAGTATGACGTGTGGTCCCACGACGTGTCCCTGGCCAACCGGATGGAGGCAGCCGGAGTACCCGG___CCGGGTGCACATCACGGAGGCCACGCTAAAGCACCTGGACAAGGCGTACGAGGTGGAGGATGGGC PTEDLRSWEKKQRAPLRFQGDSRLEQSGCYHHCVDENIERRNHYLDLAGIENYTSQFGP|grcgrprawtstcvwaytrgmccagssgcasgsmtcgpttcpwptgwrqpeypagctsrrpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 FALSE|FALSE|FALSE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13333 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50632408:+ chr16:50582307-50683160:+ chr16:50666319:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50304360:+ chr16:50280048-50352046:+ chr16:50338271:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Adenylate_and_Guanylate_cyclase_catalytic_domain(55%),Adenylate_cyclase__conserved_domain(100%) |DUF1053(100%),Guanylate_cyc(14%) 1 2 2 10421 1040 ENST00000268459.6 ENST00000394697.7 downstream upstream mismatches(1) CAGAGCGCAAGGCCCCGAGCAGAGACCAAGCCCACTGAGGACCTGCGGAGCTGGGAGAAGAAGCAGCGAGCCCCGCTCAG___GTTCCAGGGTGACAGCCGCCTGGAGCAGTCTGGCTGCTACCACCATTGCGTAGATGAGAACATCGAGAGGAGAAACCACTACTTAGATCTCGCCGGGATAGAAAACTACACGTCCCAATTTGGGCCTG|AGCCAGCAGCCACCCCCGCCCAGCCAACACCTCCCCAGGCCCAAGGGGGACGCGGCCCTGAAGAT...GGGGGGCGGCACGGCCCTTTGCACATCTCAACCACCGTGAGAGCGTGAGCAGTGGTGAGACCCACGTCCCCAACGGGCGGAGGCCTAAG___AGCGTTCCCCAGCGCCACCGCCGGACCCCAGACAG___AAGCATGTCCCCCAAGGGGCGGTCGGAGGATGACTCGTACGATGACGAGATGCTGTCAGC QSARPRAETKPTEDLRSWEKKQRAPLRFQGDSRLEQSGCYHHCVDENIERRNHYLDLAGIENYTSQFGP|epaatpaqptppqaqggrgpe NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 FALSE|FALSE|FALSE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13337 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50608360:+ chr16:50582307-50683160:+ chr16:50642271:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50300715:+ chr16:50280048-50352046:+ chr16:50334626:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Adenylate_and_Guanylate_cyclase_catalytic_domain(75%),Adenylate_cyclase__conserved_domain(100%) |DUF1053(100%),Guanylate_cyc(19%) 2 0 1 18817 1132 ENST00000268459.6 ENST00000394697.7 downstream upstream mismatches(1) GCATGGCTTAGGGACGCTCCCGGCCGCCGCAGCCCCAGCATGGGGAAACTTCACTCCAAGCCGG___CCGCCGTGTGCAAGCGCAGGGcGAGCCCGGAAG___GTGA...CTCGGAAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGGCGGTGTCTCGGGACCCCGACAGCTGCGGTTGGCGGGCACCATAGGCCGAAGCACC...AGACACGCTCAGCGAGGAAGAGGAGGACGACTTTCGGCTGGAAG|GCAGGTGCGGGAGGCCACGGGCGTGGACATCAACATGCGTGTGGGCATACACTCGGG DTLSEEEEDDFRLE|grcgrprawtstcvwaytr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 FALSE|FALSE|FALSE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13338 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50549555:+ chr16:50582307-50683160:+ chr16:50583466:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50304360:+ chr16:50280048-50352046:+ chr16:50338271:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Adenylate_and_Guanylate_cyclase_catalytic_domain(55%),Adenylate_cyclase__conserved_domain(100%) |DUF1053(100%),Guanylate_cyc(14%) 1 1 1 13834 1040 ENST00000268459.6 ENST00000394697.7 downstream upstream none CGGAAGGGCATCGAGGAGTGGATCGGGAGACAGCGCTGCCCGGGCGGTGTCTCGGGACCCCGACAGCTGCGGTTGGCGGGCACCATAGGCCGAAGCACCCGG|AGCCAGCAGCCACCCCCGCCCAGCCAACACCTCCCCAGGCCCAAGGGGGACGCGGCCCTGAAGATGCGGGCGTCAGTGCGCATGACCCGGTACCTCGAGTCCTG RKGIEEWIGRQRCPGGVSGPRQLRLAGTIGRSTR|SQQPPPPSQHLPRPKGDAALKMRASVRMTRYLES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 TRUE|TRUE|TRUE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13341 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50608360:+ chr16:50582307-50683160:+ chr16:50642271:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50308327:+ chr16:50280048-50352046:+ chr16:50342238:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Adenylate_and_Guanylate_cyclase_catalytic_domain(55%) |Guanylate_cyc(14%) 1 0 0 18817 1307 ENST00000268459.6 ENST00000394697.7 downstream upstream duplicates(1) CGGGAGACAGCGCTGCCCGGGCGGTGTCTCGGGACCCCGACAGCTGCGGTTGGCGGGCACCATAGGCCGAAGCACCCGG___GAGCTCGTGGGCGACGTGTTGAGAGACACGCTCAGCGAGGAAGAGGAGGACGACTTTCGGCTGGAAG|GACGGCGGCACTGGGTGTGTCCTTCG GRQRCPGGVSGPRQLRLAGTIGRSTRELVGDVLRDTLSEEEEDDFRLE|grrhwvcp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 FALSE|FALSE|FALSE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13342 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50549555:+ chr16:50582307-50683160:+ chr16:50583466:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50308667:+ chr16:50280048-50352046:+ chr16:50342578:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Adenylate_and_Guanylate_cyclase_catalytic_domain(55%) |Guanylate_cyc(14%) 0 1 0 13834 2057 ENST00000268459.6 ENST00000394697.7 downstream upstream none CCCGGGCGGTGTCTCGGGACCCCGACAGCTGCGGTTGGCGGGCACCATAGGCCGAAGCACCCGG|AGGTGCTGCCCAGCTCGGGGGACGCTCTGCACTATCT...GAGGATGAGCCTGGAGCCAAAGGTTGTGCTGCTGACAGTGGCCCTGGTGGCCTACCTGGTGCTCTTCAACCTCTCCCCATGCTGGCAGTGGGACTGCTGCG PGGVSGPRQLRLAGTIGRSTR|RCCPARGTLCTI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 TRUE|TRUE|TRUE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13343 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2350 TRUE 909 NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50549555:+ chr16:50582307-50683160:+ chr16:50583466:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50311693:+ chr16:50280048-50352046:+ chr16:50345604:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Adenylate_and_Guanylate_cyclase_catalytic_domain(55%) |Guanylate_cyc(14%) 0 1 0 13834 1574 ENST00000268459.6 ENST00000394697.7 downstream upstream none GGGCACCATAGGCCGAAGCACCCGG|TGGCACCCCTAGCTGTTCCTGGAAGGACCTGAAGACCATGACCAATTTCTACCTGGTCCTGTTCTACATCACCCTGCTTACACTCTCCAGACAG___ATTGACTATTACTGCCGCTTGGACTGC GTIGRSTR|whp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 TRUE|TRUE|TRUE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13347 SUPV3L1::VPS26A ENSG00000156502.14::ENSG00000122958.15 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1327 FALSE NA FALSE NA SUPV3L1 ENSG00000156502.14 protein_coding + + chr10:69180234-69209099:+ chr10:69207941:+ chr10:70939990-70968855:+ chr10:70967697:+ VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69162406:+ chr10:70883268-70934168:+ chr10:70922162:+ chr10:69208909,chr10:69208910 chr10:69159393,chr10:69159391 NA NA chr10:70968665,chr10:70968666 chr10:70919149,chr10:70919147 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Helicase_conserved_C-terminal_domain(100%),Mitochondrial_degradasome_RNA_helicase_subunit_C_terminal(38%),Suv3_C-terminal_domain_1(100%),Suv3_helical_N-terminal_domain(100%)|Vacuolar_protein_sorting-associated_protein_26_(36%) Helicase_C(100%),SUV3_C(6%),Suv3_C_1(100%),Suv3_N(100%)|Vps26(22%) 26 26 45 458 768 ENST00000359655.9 ENST00000263559.11 downstream upstream duplicates(8),inconsistently_clipped(1),mismatches(1) CCACTAAGTCTGCGAGTGAGGTATGTTTTCTGCACAGCTCCTATCAACAAGAAGCAGCCTTTTGTGTGTTCTTCACTGTTACAG___TTTGCCAGGCAGTATAGCAGGAATGAGCCCCTGACCTTTGCATGGTTACGCCGATACATCAAATGGCCTTTACTTCCACCTAAGAATATTAAAGACCTCATGGATCTTGAAGCTGTCCACGATGTCTTGGATCTTTACTTGTGGCTAAG|GTATCATTTAAAGGATGTGATTGTTGGAAAAATTTACTTCTTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCTGATCAAAAAAGAGATCACAGGAATTG___GACCCAGTACCACAACAGAAACAGAAACAATCGCCAAATATGAAATAATGGATGGTGCACCAGTAAAAG___GTGAATCAATTCCAATAAGGCTATTTTTAGCAGGATATGACCCAAC PLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLr|YHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 70962799 FALSE 70915568 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13349 HIPK3::CCDC73 ENSG00000110422.12::ENSG00000186714.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIPK3 ENSG00000110422.12 protein_coding + + chr11:33256672-33357023:+ chr11:33287511:+ chr11:33278218-33378569:+ chr11:33309057:+ CCDC73 ENSG00000186714.13 protein_coding - + chr11:32602721-32794662:- chr11:32674048:+ chr11:32624267-32816208:- chr11:32695594:+ chr11:33318566,chr11:33318565 chr11:32634234,chr11:32634230 NA NA chr11:33340112,chr11:33340111 chr11:32655780,chr11:32655776 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(51%)| Kdo(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 34 24 12 222 46 ENST00000303296.9 unknown downstream upstream duplicates(3),mismatches(2) AATTTAGTCCCCTGCCACTAAAAGTGATTCGGCCCATTCTTCAACAAGTGGCCACTGCACTGAAAAAATTGAAAAGTCTTGGTTTAATTCATGCTGATCTCAAGCCAGAGAATATTATGTTGGTGGATCCTGTTCGGCAGCCTTACAGGGTTAAAGTAATAGACTTTGGGTCGGCCAGTCATGTATCAAAGACTGTTTGTTCAACATATCTACAATCTCGGTACTACAG|GCTCTCCACTGGCCCAGCTCAACAGGAAGTCAGAAGACGTGGAAGCCCATTGATGCAACCCATATACATAAGCCTTCAAAAG___GAACTGAAGAGAAATTTTAGTCAAGAAAAGCTACAGAATTGAAATGAGC FSPLPLKVIRPILQQVATALKKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYr|lstgpaqqevrrrgsplmqpiyislqkelkrnfsqeklqn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Homeodomain-interacting protein kinase 3 CMGC DYRK HIPK Q9H422 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13350 ZNF252P::ATAD2 ENSG00000291080.1::ENSG00000156802.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1328 TRUE 2351 TRUE 910 ZNF252P ENSG00000291080.1 lncRNA - - chr8:144973589-145002912:- chr8:145002817:- chr8:146198975-146228298:- chr8:146228203:- ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123339446:- chr8:124332090-124428590:- chr8:124351686:- chr8:145000354,chr8:145000356 chr8:123342105,chr8:123342104 NA NA chr8:146225740,chr8:146225742 chr8:124354345,chr8:124354344 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Bromodomain(100%) |Bromodomain(100%) 3 65 0 103 758 ENST00000426361.7 ENST00000521903.5 upstream downstream duplicates(6),mismatches(4) GGGGCTTGGCTCCCCGCGGCACGGGATTTAGCGTTCGCGCTCCTTCCCTTCCCGTGGTCGAGCCGA|GTGCAAGAATTGTTTATCCGTGATTATGGAGAGATTTTTAATGTCCAGTTACCGGATAAAGAAGAACGGACAAAATTTTTTGAAGATTTAATTCTAAAACAAGCTGCTAAGCCTCCTATATCAAAAAAGAAAGCAG___TTTTGCAGGCTTTGGAGGTACTCCCAGTAGCACCACCACCTGAGCCAAGATCACTGACAGCAGAAGAAGTGAAACGACTAGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13351 ZNF252P::ATAD2 ENSG00000291080.1::ENSG00000156802.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2351 TRUE 910 ZNF252P ENSG00000291080.1 lncRNA - - chr8:144973589-145002912:- chr8:145002785:- chr8:146198975-146228298:- chr8:146228171:- ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123339446:- chr8:124332090-124428590:- chr8:124351686:- chr8:145000354,chr8:145000356 chr8:123342105,chr8:123342104 NA NA chr8:146225740,chr8:146225742 chr8:124354345,chr8:124354344 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Bromodomain(100%) |Bromodomain(100%) 2 2 0 110 758 ENST00000690265.1 ENST00000521903.5 upstream downstream none GGGGGCTTGGCTCCCCGCGGCACGGGATTTAGCGTTCGCGCTCCTTCCCTTCCCGTGGTCGAGCCGAGTGAGTCCCGAGCTAGGGCGCCTGGTGCGGAG|GTGCAAGAATTGTTTATCCGTGATTATGGAGAGATTTTTAATGTCCAGTTACCGGATAAAGAAGAACGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13352 ZNF252P::ATAD2 ENSG00000291080.1::ENSG00000156802.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2351 TRUE 910 ZNF252P ENSG00000291080.1 lncRNA - - chr8:144973589-145002912:- chr8:145002793:- chr8:146198975-146228298:- chr8:146228179:- ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123339446:- chr8:124332090-124428590:- chr8:124351686:- chr8:145000354,chr8:145000356 chr8:123342105,chr8:123342104 NA NA chr8:146225740,chr8:146225742 chr8:124354345,chr8:124354344 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Bromodomain(100%) |Bromodomain(100%) 0 1 0 110 758 ENST00000690265.1 ENST00000521903.5 upstream downstream inconsistently_clipped(1) CTTGGCTCCCCGCGGCACGGGATTTAGCGTTCGCGCTCCTTCCCTTCCCGTGGTCGAGCCGAGTGAGTCCCGAGCTAGGGCGCCTG|GTGCAAGAATTGTTTATCCGTGATTATGGAGAGATTTTTAATGTCCAGTTACCGGATAAAGAAGAACGGACAAAATTTTTTGAAGATTTAATTCTAAAACAAGCTGCTAAGCCTCCTATATCAAAAAAGAAAGCAG___TTTTGCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13353 ATRX::MAGT1 ENSG00000085224.23::ENSG00000102158.22 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1329 TRUE 2352 TRUE 911 ATRX ENSG00000085224.23 protein_coding - - chrX:77504880-77786233:- chrX:77652114:- chrX:76760358-77041719:- chrX:76907604:- MAGT1 ENSG00000102158.22 protein_coding - - chrX:77825747-77899271:- chrX:77830895:- chrX:77081244-77154768:- chrX:77086392:- chrX:77636989,chrX:77636999 chrX:77843042,chrX:77843044 NA NA chrX:76892480,chrX:76892490 chrX:77098539,chrX:77098541 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Cysteine_Rich_ADD_domain(100%)|OST3_/_OST6_family__transporter_family(10%) ADD_ATRX(100%)|OST3_OST6(8%) 23 20 10 415 1247 ENST00000373344.11 ENST00000689137.1 upstream downstream duplicates(5),mismatches(4) GGAAGATGAAAATGATGATTCCAAGTCTCCTGGAAAAGGCAGAAAGAAAATTCGGAAGATTCTTAAAGATGATAAACTGAGAACAGAAACACAAAATGCTCTTAAGGAAGAGGAAGAGAGACGAAAACGTATTGCTGAGAGGGAGCGTGAGCGAGAAAAATTGAGAGAG|TAATGTGTGTGGCTGGTATTGGACTTGTTGTATTATTCTTCAGTTGGATGCTCTCTATTTTTAGATCTAAATATCATGGCTACCCATACAG___CTTTCTGATGAGTTAAAAAGGTCCCAGAGATATATAGACACTGGAGTACTGGAAATTGAAAAACGAAAATCGTGTGT EDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLRE|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin,Bladder no_match TRUE Skin Cutaneous Melanoma SKIN no_match 76972608 FALSE 77112994 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE alpha thalassemia/mental retardation syndrome X-linked 1 Yes pancreatic neuroendocrine tumours, paediatric GBM epithelial TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 13354 ATRX::MAGT1 ENSG00000085224.23::ENSG00000102158.22 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2352 TRUE 911 ATRX ENSG00000085224.23 protein_coding - - chrX:77504880-77786233:- chrX:77652114:- chrX:76760358-77041719:- chrX:76907604:- MAGT1 ENSG00000102158.22 protein_coding - - chrX:77825747-77899271:- chrX:77841320:- chrX:77081244-77154768:- chrX:77096817:- chrX:77636989,chrX:77636999 chrX:77843042,chrX:77843044 NA NA chrX:76892480,chrX:76892490 chrX:77098539,chrX:77098541 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Cysteine_Rich_ADD_domain(100%)|OST3_/_OST6_family__transporter_family(18%) ADD_ATRX(100%)|OST3_OST6(29%) 1 4 11 415 883 ENST00000373344.11 ENST00000689137.1 upstream downstream duplicates(2),mismatches(1) GGAAAAAGAAGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGATGAAAATGATGATTCCAAGTCTCCTGGAAAAGGCAGAAAGAAAATTCGGAAGATTCTTAAAGATGATAAACTGAGAACAGAAACACAAAATGCTCTTAAGGAAGAGGAAGAGAGACGAAAACGTATTGCTGAGAGGGAGCGTGAGCGAGAAAAATTGAGAGAG|ATGGTGGAGTTACCTTAGGAATGGTGCTTTTATGTGAAGCTGCTACCTCTGACATGGATATTGGAAAGCGAAAGA___TAATGTGTGTGGCTGGTATTGG...ATTCTTCAGTTGGATGCTCTCTATTTTTAGATCTAAATATCATGGCTACCCATACAG___CTTTCTGATGAGTTAAAAAGGTCCCAGAGATATATAGACACTGGAGTACTGGAAATTGAAAAACGAAAATCGTG EKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLRE|mvelp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin,Bladder no_match TRUE Skin Cutaneous Melanoma SKIN no_match 76972608 FALSE 77112994 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE alpha thalassemia/mental retardation syndrome X-linked 1 Yes pancreatic neuroendocrine tumours, paediatric GBM epithelial TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 13355 ATRX::MAGT1 ENSG00000085224.23::ENSG00000102158.22 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2352 TRUE 911 ATRX ENSG00000085224.23 protein_coding - - chrX:77504880-77786233:- chrX:77652114:- chrX:76760358-77041719:- chrX:76907604:- MAGT1 ENSG00000102158.22 protein_coding - - chrX:77825747-77899271:- chrX:77826809:- chrX:77081244-77154768:- chrX:77082306:- chrX:77636989,chrX:77636999 chrX:77843042,chrX:77843044 NA NA chrX:76892480,chrX:76892490 chrX:77098539,chrX:77098541 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Cysteine_Rich_ADD_domain(100%)| ADD_ATRX(100%)|OST3_OST6(0%) 1 0 0 415 848 ENST00000373344.11 ENST00000685015.1 upstream downstream none GAAAATTCGGAAGATTCTTAAAGATGATAAACTGAGAACAGAAACACAAAATGCTCTTAAGGAAGAGGAAGAGAGACGAAAACGTATTGCTGAGAGGGAGCGTGAGCGAGAAAAATTGAGAGAG|GCCAAATCTATGCTGTGGTTCTTATGAGACTTGTATGAAGATGCCCTGATTTGTACAGATTGA KIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLRE|aksmlwfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin,Bladder no_match TRUE Skin Cutaneous Melanoma SKIN no_match 76972608 FALSE 77112994 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE alpha thalassemia/mental retardation syndrome X-linked 1 Yes pancreatic neuroendocrine tumours, paediatric GBM epithelial TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 13356 PAK1::TENM4 ENSG00000149269.10::ENSG00000149256.16 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1330 FALSE NA FALSE NA PAK1 ENSG00000149269.10 protein_coding - - chr11:77322017-77474635:- chr11:77473552:- chr11:77033062-77185680:- chr11:77184597:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78903523:- chr11:78363874-79152074:- chr11:78614568:- chr11:77433918,chr11:77433921 chr11:78918572,chr11:78918572 NA NA chr11:77144963,chr11:77144966 chr11:78629617,chr11:78629617 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |EGF-like_domain(100%),GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),RHS_Repeat(100%),Teneurin_Intracellular_Region(53%) |EGF_2(100%),RHS_repeat(100%),Ten_N(7%),Tox-GHH(100%),hEGF(100%) 14 25 11 759 73 ENST00000356341.8 ENST00000278550.12 upstream downstream duplicates(1),low_entropy(1),mismatches(8) GCCACGGGCAGCGCGGCGGCGGCGGCAGGAGGGAGAAAGTGAAGCGGTAGCTCGCGCACACTCGCGCCCTCACTCCCGGCTAGGCGGCACCCACCGCCGGGAGGAGGAGGAGGAGCCGAGAGGAGCTGAGCGAGCGCGGAAG|ATCATCCGGGCGGCCTGCAGAACCACGCGCGGCTCCGGACGCCGCCGCCGCCGCTCTCGCACGCCCACACCCCCAACCAGCACCACGCGGCCTCCATTAACTCCCTGAACCGGGGCAACTTCACGCCGAGGAGCAACCCCAGCCCGGCCCCCACGGACCACTCGCTCTCCGGAGAGCCCCCTGCCGGCGGCGCCCAGGAGCCTGCCCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 1 STE STE20 PAKA Q13153 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13359 BPTF::ARSG ENSG00000171634.19::ENSG00000141337.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BPTF ENSG00000171634.19 protein_coding + + chr17:67825503-67984378:+ chr17:67854762:+ chr17:65821619-65980494:+ chr17:65850878:+ ARSG ENSG00000141337.13 protein_coding + + chr17:68259182-68422731:+ chr17:68306943:+ chr17:66255323-66418872:+ chr17:66303084:+ chr17:67862931,chr17:67862930 chr17:68292618,chr17:68292614 NA NA chr17:65859047,chr17:65859046 chr17:66288759,chr17:66288755 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none DDT_domain(100%),PHD-finger(30%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(35%)|C-terminal_region_of_aryl-sulfatase(100%),Sulfatase(100%) DDT(100%),PHD(1%),WSD(0%)|Sulfatase(100%),Sulfatase_C(100%) 7 16 8 180 40 ENST00000306378.11 ENST00000448504.6 downstream upstream duplicates(1),mismappers(2),mismatches(4) GGTGATACAGTATGATGACCATTGTAGGGTTTGTCACAAACTTGGGGATTTGCTTTGCTGTGAGACATGTTCAGCAGTATACCATTTGGAATGTGTGAAGCCACCTCTTGAGGAGGTGCCAGAGGACGAGTGGCAGTGTGAAGTCTGTGTAGCACACAAGGTGCCTGGTGTGACTGACTGTGTTGCTGAAATCCAAAAAAATAAACCATATATTCGACATGAACCTATTGGATATGATAGAAGTCGGAGGAAATACTGGTTCTTGAACCGAAGACTCATAAT|GAAACCTTACAGAAACATGAAGCCCTCAACCATCTGCTACTCAGTTATTCGGGGCTGACGGCGGCTTCTAGAACATCCAGGTGTTCTGCAGATGCGAGAACTCATCCTGTAGTCACCAGATGGAGTCCCAAACAGCCAAGCAGATGTAAGGCCTGTGCTGTGGCTCTGAGGCCCTGAATACAGAAGGGTCACTTTCTTAGTGGCCAAAGAGCAGTTGTTGACATTGATGTCTAATTATTGAACACGACCAGTCATTTTACTGAGCTGCaGTGAGGAAACACTGACCATAGAAGAT VIQYDDHCRVCHKLGDLLCCETCSAVYHLECVKPPLEEVPEDEWQCEVCVAHKVPGVTDCVAEIQKNKPYIRHEPIGYDRSRRKYWFLNRRLIm|kpyrnmkpsticysvirg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13360 DOK6::CCDC102B ENSG00000206052.11::ENSG00000150636.17 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1332 FALSE NA FALSE NA DOK6 ENSG00000206052.11 protein_coding + + chr18:69400888-69849087:+ chr18:69401310:+ chr18:67068124-67516323:+ chr18:67068546:+ CCDC102B ENSG00000150636.17 protein_coding + + chr18:68715209-69055189:+ chr18:68874669:+ chr18:66382446-66722426:+ chr18:66541906:+ chr18:69469455 chr18:68863295 NA NA chr18:67136691 chr18:66530532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 7 14 8 239 41 ENST00000382713.10 ENST00000360242.9 downstream upstream duplicates(1),mismatches(2) TGCGAGACCCGCGCAGACCCGGCGGCGGACGGCGGCTCTCGACTCCGGAGAGCGGATCGCGGGGCGCAGGAGCCCGATCGCGCTGGCCATGGCCTCCAACTTTAACGACATAGTCAAGCAGGGCTACGTGAAAATCCGCAGCAGGAAGCTTGGG|TTTGACATTCTTCTTGGTCAACATAATGATGAAATGCAAGAACTGTCAGGCAATATAAAGGAAGAATCCAAATCTCAAAACAGCAAAGACAGAGTGATTTGTGAGTTAAGAGCAGAG___CTAGAGAGATTGCAAGCTGAAAATACCTCGGAGTGGGAC MASNFNDIVKQGYVKIRSRKLG|FDILLGQHNDEMQELSGNIKEESKSQNSKDRVICELRAELERLQAENTSEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13361 KMT2E::LETM2 ENSG00000005483.23::ENSG00000165046.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2353 TRUE 912 KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105081797:+ chr7:104581390-104755466:+ chr7:104722244:+ LETM2 ENSG00000165046.13 protein_coding + + chr8:38386207-38409527:+ chr8:38402525:+ chr8:38243725-38267045:+ chr8:38260043:+ chr7:105085298,chr7:105085579,chr7:105085299 chr8:38400888,chr8:38400888,chr8:38400886 NA NA chr7:104725745,chr7:104726026,chr7:104725746 chr8:38258406,chr8:38258406,chr8:38258404 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site translocation high none PHD-finger(100%),SET_domain(100%)|LETM1-like__RBD(22%) PHD(100%),SET(100%)|LETM1(20%) 4 6 13 167 40 ENST00000311117.8 ENST00000379957.9 downstream upstream duplicates(1),mismatches(2) TGTTGATGCAAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCTTGTACACCCAATGCAGAG___GTGAGGCATGAAATTCAAGATGGAACCATACATCTTTATATTTATTCTATACACAGTATTCCAAAGGGAACTGAAATTACTATTGCCTTTGATTTTGACTATGGAAATTG|ATAATTGCCAAGGAAGGGGTGACAGCATTGAGTGTATCAGAACTACAGGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGTCTCACGGAGGAACAACTGCGACAACAGCTCACGGAG___TGGCAGGACCTCCACCTGAAGGAGAACGTCCCTCCTTCCCTTTTGCTCCTGTCCCGCACCTTCTACCTGATAGATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13362 KMT2E::LETM2 ENSG00000005483.23::ENSG00000165046.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2353 TRUE 912 KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105078963:+ chr7:104581390-104755466:+ chr7:104719410:+ LETM2 ENSG00000165046.13 protein_coding + + chr8:38386207-38409527:+ chr8:38402525:+ chr8:38243725-38267045:+ chr8:38260043:+ chr7:105085298,chr7:105085579,chr7:105085299 chr8:38400888,chr8:38400888,chr8:38400886 NA NA chr7:104725745,chr7:104726026,chr7:104725746 chr8:38258406,chr8:38258406,chr8:38258404 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none PHD-finger(100%),SET_domain(83%)|LETM1-like__RBD(22%) PHD(100%),SET(41%)|LETM1(20%) 1 0 2 133 40 ENST00000311117.8 ENST00000379957.9 downstream upstream none TTGCTCTTCAAACCTCCTGTAGAG___AGCCATATACAAAAGAATAAGAAAATTCTTAAATCTGCAAAAGATTTGCCTCCTGATGCACTTATCATTGAATACAGAGGGAAGTTTATGCTGAGAGAACAGTTTGAAGCAAATGGGTATTTCTTTAAAAG___ACaATACCCTTTTGTGTTAT...GTGTTGATGCAAGGACTTTTGGGAATGAGGCTCGATTCATCAGGCGGTCTTGTACACCCAATGCAGAG|ATAATTGCCAAGGAAGGGGTGACAGCATTGAGTGTATCAGAACTACAGGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGTCTCACGGAGGAACAACTGCGACAACAGCTCACGGAG VDARTFGNEARFIRRSCTPNAE|IIAKEGVTALSVSELQAACRARGMRSLGLTEEQLRQQLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13363 KMT2E::LETM2 ENSG00000005483.23::ENSG00000165046.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2353 TRUE 912 KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105077433:+ chr7:104581390-104755466:+ chr7:104717880:+ LETM2 ENSG00000165046.13 protein_coding + + chr8:38386207-38409527:+ chr8:38402525:+ chr8:38243725-38267045:+ chr8:38260043:+ chr7:105085298,chr7:105085579,chr7:105085299 chr8:38400888,chr8:38400888,chr8:38400886 NA NA chr7:104725745,chr7:104726026,chr7:104725746 chr8:38258406,chr8:38258406,chr8:38258404 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none PHD-finger(100%),SET_domain(60%)|LETM1-like__RBD(22%) PHD(100%),SET(9%)|LETM1(20%) 1 0 1 135 40 ENST00000311117.8 ENST00000379957.9 downstream upstream none ATCGATATGAAGAAGCAAATAACAACCAGTACAGTGAGGGTGTTCAGAGGGAGGCACAAAGAATAGCTCTGAGATTAGGCAATGGAAATGACAAAAAAGAG...CTTATCATTGAATACAGAGGGAAGTTTATGCTGAGAGAACAGTTTGAAGCAAATGGGTATTTCTTTAAAAG|ATAATTGCCAAGGAAGGGGTGACAGCATTGAGTGTATCAGAACTACAGGCTGCCTtTAGGGCCCGAGGGATGAGATCACTGGGTCTCACGGAGGAACAACTGCGACAACAGCTCAC LIIEYRGKFMLREQFEANGYFFKr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13364 KMT2E::LETM2 ENSG00000005483.23::ENSG00000165046.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2353 TRUE 912 KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105041023:+ chr7:104581390-104755466:+ chr7:104681470:+ LETM2 ENSG00000165046.13 protein_coding + + chr8:38386207-38409527:+ chr8:38402525:+ chr8:38243725-38267045:+ chr8:38260043:+ chr7:105085298,chr7:105085579,chr7:105085299 chr8:38400888,chr8:38400888,chr8:38400886 NA NA chr7:104725745,chr7:104726026,chr7:104725746 chr8:38258406,chr8:38258406,chr8:38258404 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |LETM1-like__RBD(22%) |LETM1(20%) 0 1 0 222 40 ENST00000622386.2 ENST00000379957.9 downstream upstream none CGTCATACTTGGAAATGGCTGCAGGTTCAGA|ATAATTGCCAAGGAAGGGGTGACAGCATTGAGTGTATCAGAACTACAGGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGTCTCACGGAG SYLEMAAGSe|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13366 GTF2F2::LINC00407 ENSG00000188342.13::ENSG00000237585.1 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GTF2F2 ENSG00000188342.13 protein_coding + + chr13:45120510-45284893:+ chr13:45136806:+ chr13:45694645-45859028:+ chr13:45710941:+ LINC00407 ENSG00000237585.1 lncRNA + + chr13:44651812-44701016:+ chr13:44700920:+ chr13:45225948-45275152:+ chr13:45275056:+ chr13:45143073,chr13:45143072 chr13:44670974,chr13:44670970 NA NA chr13:45717208,chr13:45717207 chr13:45245110,chr13:45245106 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none TFIIF__beta_subunit_N-terminus(34%)| TFIIF_beta_N(18%)| 7 1 2 506 15 ENST00000340473.8 ENST00000426509.1 downstream upstream duplicates(1) GTAAGGAACGCCGGCTCTTCGCCTCTCAGCGCGGCTTGTCCTTTGTTCCGGACGCCCGCTCCTCAGCCCTGCGGCTCCTGGGGTCGCTGCTGCATCCCGCACGCCTCCACCGGCTGCAGACCCATGGCCGAGCGCGGGGAACTCGACTTGACCGGCGCCAAACAGAACACAGGAGTGTGGCTAGTCAAG___GTTCCTAAATATTTGTCACAGCAATGGGCTAAAGCCTCTGGAAGAGGTGAAGTTGGGAAACTGCGGATTGCCAA|ATGAGGACACTGAAGCACCGAGAAGGAAACAGAAGATTCAGGACAAAGCCAGCTCTGTCTCCTGTACCAACCTTGCATGAAAAACAACCAAGGAAATCTTGCTTTGAGCAGAAACGATTTGCGAG MAERGELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAk|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13370 AKAP10::SPECC1 ENSG00000108599.15::ENSG00000128487.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AKAP10 ENSG00000108599.15 protein_coding - - chr17:19904302-19978343:- chr17:19947407:- chr17:19807615-19881656:- chr17:19850720:- SPECC1 ENSG00000128487.19 protein_coding + - chr17:20008865-20319026:+ chr17:20024468:- chr17:19912178-20222339:+ chr17:19927781:- chr17:19943803,chr17:19943807 chr17:20040441,chr17:20040442 NA NA chr17:19847116,chr17:19847120 chr17:19943754,chr17:19943755 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Regulator_of_G_protein_signaling_domain(17%)| RGS(28%)| 4 0 2 116 3 ENST00000225737.11 unknown upstream downstream mismatches(1) CAGCACTCAGAATCACTTGCTGCTTTCCCAGGAATGTGACAGTGCCCATTCTCTCCGTCTTGAAATGGCCAGAGCAGGAACTCACCAAGTTTCCATGGAAACCCAAGAATCTTCCTCTACACTTACAGTAGCCAGTAGAAATAGTCCCGCTTCTCCACTAAAAGAATTGTCAGGAAAACTAATGAAAA___GTATAGAACAAGATGCAGTGAATACTTTTACCAAATATATATCTCCAGATGCTGCTAAACCAATACCAATTACAGAAGCAATGAGAAATGACATCATAG|TGCCTAATCTGTCTCTCAAAAAAGGAAAGCAATTGAGAGAAACTGAAAACTCCAATTGAAATGAAAGAATGGAGAATTACTGaACTAGAAGAGAAGAGAAAAATTTATTCCGCATAGAGTAAACAAGAATGGATTCACA STQNHLLLSQECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKELSGKLMKSIEQDAVNTFTKYISPDAAKPIPITEAMRNDII|vpnlslkkgkqlretensn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13372 KDM6A::PCBP3 ENSG00000147050.18::ENSG00000183570.17 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM6A ENSG00000147050.18 protein_coding + + chrX:44873188-45112779:+ chrX:44873987:+ chrX:44732434-44972024:+ chrX:44733233:+ PCBP3 ENSG00000183570.17 protein_coding + - chr21:45643694-45942454:+ chr21:45800408:- chr21:47063608-47362368:+ chr21:47220322:- chrX:44894189,chrX:44894187 chr21:45838768,chr21:45838770 NA NA chrX:44753435,chrX:44753433 chr21:47258682,chr21:47258684 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 0 2 192 26 ENST00000611820.5 unknown downstream downstream none GGCGTTGGAGTTGTGAATTCGCTGCGTTTCCATGAAATCCTGCGGAGTGTCGCTCGCTACCGCCGCCGCTGCCGCCGCCGCTTTCGGTGATGAGGAAAAGA...GCGGGAAAAGCGAGCGGCGAGAGCGAGGAGGCGTCCCCCAGCCTGACAGCCGAGGAGAGGGAGGCGCTCGGCGGACTGGACAG___CCGCCTCTTTGGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAG|GTTCCAAGGTCTCTTCCTTTGTCTACAAAGGCGACATCATCTGCACTTCACAGAAGGCCTGGCTCAGGGCGCACAGGC...AGGGGTAGCCCTGACCTGGACCTGCTGTtTCTGTGGGTGGATCTGCCAGGAGCCTCTGGCTTGGCCCGGTGCTCCCAAGAAAAAGCTGCAAGAGAGGAACT AGKASGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGK|vprslplstkatssalhrrpgsgrt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific demethylase 6A, UTX 1 Yes renal cell carcinoma, bladder carcinoma, oesophageal SCC, MM, medulloblastoma, T-ALL, other tumour types epithelial, leukaemia_lymphoma oncogene, TSG large_deletion, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 13384 NEIL1::PPCDC ENSG00000140398.14::ENSG00000138621.12 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEIL1 ENSG00000140398.14 protein_coding + + chr15:75346955-75357115:+ chr15:75347999:+ chr15:75639296-75649456:+ chr15:75640340:+ PPCDC ENSG00000138621.12 protein_coding + + chr15:75023586-75117462:+ chr15:75044386:+ chr15:75315927-75409803:+ chr15:75336727:+ chr15:75348564,chr15:75348563 chr15:75043915,chr15:75043911 NA NA chr15:75640905,chr15:75640904 chr15:75336256,chr15:75336252 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Flavoprotein(66%) |Flavoprotein(23%) 0 3 1 56 212 ENST00000564784.5 ENST00000342932.8 downstream upstream none CCTGTGGGTGCCAGGCCAGGGGCGGCTCCCAGGTGTGGAGGGGGCAAGGTACGGGCGTCTGCCGTCGCTAAGTGCCCCCTTCCACTTAAGGCACACCTTCGCCTCCGATTCCGAACCGCCCGGGGACAGAG|ATgTGGAAGAGCCGCTCTGACCCAGTTCTGCACATTGACCTGCGGAGGTGGGCAGACCTCCTGCTGGTGGCTCCTCTTGATGCCAACACTCTGGGGAAGGTGGCCAGTGGCATCTGTGACAACTTGCTT___ACCTGCGTCATGCGGGCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13385 LINC02749::STIM1 ENSG00000254480.2::ENSG00000167323.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02749 ENSG00000254480.2 lncRNA + + chr11:4179675-4202663:+ chr11:4180711:+ chr11:4200905-4223893:+ chr11:4201941:+ STIM1 ENSG00000167323.13 protein_coding + + chr11:3854527-4093210:+ chr11:4055526:+ chr11:3875757-4114440:+ chr11:4076756:+ chr11:4181604,chr11:4181603 chr11:4026814,chr11:4026810 NA NA chr11:4202834,chr11:4202833 chr11:4048044,chr11:4048040 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |SAM_domain_(Sterile_alpha_motif)(100%),STIM1_Orai1-activating_region(100%) |SAM_1(100%),SAM_2(100%),SOAR(100%) 1 2 1 2 236 ENST00000667222.1 ENST00000525403.6 downstream upstream none ATATAATCTGGTGGTGCGCCGTTTTTTAAGCCCGTCGGAAAAACGGAGTATTCGGGTGGGAGTGACCCGATTTTCCAG___GATGACACAGCAAGAAGGCCCTCACCAGATGCTGAGCAGATGCCGGCACCATGCCTGTGGACTTCCCAGCCTCCAGAACT|TATACAATTGGACCGTGGATGAGGTGGTACAGTGGCTGATCACATATGTGGAGCTGCCTCAGTATGAGGAGACCTTCCGGAAGCTGCAGCTCAGTGGCCATGCCATGCCAAG___GCTGG...ACAGTtCTCTTTGGGCCTCCTCTCT___TGACTCGCCATAATCACCTCAAGGACTTCATGCTGGTGGTGTCTATCGTTATTGGTGTGGGCGGCTGCTGGTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13386 TACR1::ENSG00000225889 ENSG00000115353.11::ENSG00000225889.10 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TACR1 ENSG00000115353.11 protein_coding - - chr2:75046463-75199520:- chr2:75120574:- chr2:75273590-75426646:- chr2:75347700:- ENSG00000225889 ENSG00000225889.10 lncRNA + + chr2:64143239-64257610:+ chr2:64188458:+ chr2:64370373-64484744:+ chr2:64415592:+ chr2:75094096,chr2:75094101 chr2:64152207,chr2:64152205 NA NA chr2:75321223,chr2:75321228 chr2:64379341,chr2:64379339 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none 7_transmembrane_receptor_(rhodopsin_family)(57%)| 7tm_1(53%)| 1 0 2 5 0 ENST00000305249.10 ENST00000674812.1 upstream upstream none TGGCCATCATACATCCCCTCCAGCCCCGGCTGTCAGCCACAGCCACCAAAGTGGTCATCTGTGTCATCTGGGTCCTGGCTCTCCTGCTGGCCTTCCCCCAGGGCTACTACTCAACCACAGAGACCATGCCCAGCAGAGTCGTGTGCATGATCGAATGGCCAGAGCATCCGAACAAGATTTATGAGAAAGT|AAATTAACTCTGCAAAAAGCGCTGTGGAG AIIHPLQPRLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKv|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13400 ADAMTSL1::SAXO1 ENSG00000178031.18::ENSG00000155875.15 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAMTSL1 ENSG00000178031.18 protein_coding + - chr9:17906563-18910950:+ chr9:18669914:- chr9:17906561-18910948:+ chr9:18669912:- SAXO1 ENSG00000155875.15 protein_coding - - chr9:18858906-19049358:- chr9:18863178:- chr9:18858904-19049356:- chr9:18863176:- chr9:18664407 chr9:18865954 NA NA chr9:18664405 chr9:18865952 NA NA antisense sense unknown intron 3'UTR/splice-site duplication/3'-3' medium none none |I-set(57%),Ig_3(57%) 2 2 0 39 16 unknown ENST00000649457.1 upstream downstream low_entropy(1) CCAGACTCTAGTTGATTCATTTTTGCCTTTGCCATGGCACCAAGCACAGAACCTTTCACAAAATAGGTGACTATATTTTAAAAAATGAACAAAATTGTGTG...GAAAGAAGTAATAAAAAGTTGGAAGACATACAAGCACTTTGCTATTTCGTGAGTAGCAAAGCATGGAGGATCTGGCCATAATGAGGAAAAGGATCACCTGAGAGGCTGGGAGTTGGAAG|GTGAAGAAGATGAGATGCCTGCTCCTGATACTTTGCACACACAACTATGAAAATGTGACTGTACTGTAAGATAGAGTTTGGCCGTGTTAAACAGCATGCTTCTCCAGGATTGACTGGGCCACCTCTAGGGGGTAGCAGGCAGGCAGGCTCTAGGAAATTAGTCCAATTTTAAAAGTTCACAGTACTGTTGATCAGAATTGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13401 DPYSL3::JAKMIP2 ENSG00000113657.13::ENSG00000176049.16 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2357 TRUE 913 DPYSL3 ENSG00000113657.13 protein_coding - - chr5:147390808-147510068:- chr5:147415709:- chr5:146770371-146889631:- chr5:146795272:- JAKMIP2 ENSG00000176049.16 protein_coding - - chr5:147585438-147782775:- chr5:147591686:- chr5:146965001-147162338:- chr5:146971249:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Amidohydrolase_family(24%)| Amidohydro_1(13%)| 1 2 1 6805 25 ENST00000343218.10 ENST00000265272.9 upstream downstream mismatches(1) TGATGGGAAGAGTTGCTGTGACTATGCCCTGCATGTGGACATCACCCACTGGAATGACAGCGTCAAGCAGGAAGTGCAGAACCTCATCAAGGACAAAG|AGTAACCGAAAACATGGATAAGATCCCAGGAAGACAAGTGCTTCTAAACCTTCAAAGATGGCAAAATTGTTTACACCA...CAGGACTACAACTGTGTATTTTAAAGCCATTATTCAAGGTTTCTTACTTGACAGTTCCTACACAACCCTGTTGAAAATCTACAATATATGCTGCATTTAATGAAAC DGKSCCDYALHVDITHWNDSVKQEVQNLIKDK|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13402 DPYSL3::JAKMIP2 ENSG00000113657.13::ENSG00000176049.16 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2357 TRUE 913 DPYSL3 ENSG00000113657.13 protein_coding - - chr5:147390808-147510068:- chr5:147453549:- chr5:146770371-146889631:- chr5:146833112:- JAKMIP2 ENSG00000176049.16 protein_coding - - chr5:147585438-147782775:- chr5:147591686:- chr5:146965001-147162338:- chr5:146971249:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 0 1 1 4028 25 ENST00000398514.7 ENST00000265272.9 upstream downstream none CTGAGGAAGGCGCGGGCGAGCCGGAGCAGAAGAAGGAGGGAGGGAGCCAGCCGCTGCAGCCACCACCGCCACCATGTCCTACCAAGGCAAGAAGAACATCCCGCGGATCACG|AGTAACCGAAAACATGGATAAGATCCCAGGAAGACAAGTGCTTCTAAACCTTCAAAGATGGCAAAATTGTTTAaACCAGTGAGAaGGAGATCAAAAGCgAAGAACTACCCTGTAGCCAGGACTACAtCTGTGTATTTTAAAGCCATTATTCAAGGTTTCTTACTTGACAGTTCCTtCACAAC MSYQGKKNIPRIT|SNRKHG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13406 WDR64::CHRM3 ENSG00000162843.18::ENSG00000133019.12 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDR64 ENSG00000162843.18 protein_coding + + chr1:241652278-241802777:+ chr1:241790696:+ chr1:241815580-241966079:+ chr1:241953998:+ CHRM3 ENSG00000133019.12 protein_coding + + chr1:239386565-239915452:+ chr1:239834609:+ chr1:239549865-240078752:+ chr1:239997909:+ chr1:241791704,chr1:241791702 chr1:239832971,chr1:239832966 NA NA chr1:241955006,chr1:241955004 chr1:239996271,chr1:239996266 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none WD_domain__G-beta_repeat(100%)|7_transmembrane_receptor_(rhodopsin_family)(100%) WD40(100%)|7TM_GPCR_Srsx(100%),7tm_1(100%) 0 3 0 0 13 ENST00000437684.7 unknown downstream upstream none CAAACGCACACCTCCCAAGGCCTTTGAAGTGGAACAGGATTTCAAGTTTTTCAAGTCTCTTTCTTCTCCTAAG|GTGAATCCCACTCAGTCTTCAAAGACCTGCTCATCACCTCCCCTGAAGGCAGAAAGTGTAGCTGTCTTTCTGAGTATTC...CCTTGAATATATTTTCTTAGGAAAATGTTTTTTACATAAATATATTGAGGCTGAAGTTTAACACATATGCTCAGTCATATGTCTAAAGTCAGCGGTACAGGAA KRTPPKAFEVEQDFKFFKSLSSPK|vnptqssktcsspplkaesvavflsi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13429 MLLT10::DNAJC1 ENSG00000078403.17::ENSG00000136770.11 RKO SRR8615803 SRR8670762 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21681376:+ chr10:21813575-22032559:+ chr10:21970305:+ DNAJC1 ENSG00000136770.11 protein_coding - + chr10:21756548-22003769:- chr10:21913595:+ chr10:22045477-22292698:- chr10:22202524:+ chr10:21683753,chr10:21683768 chr10:21857484,chr10:21857477 NA NA chr10:21972682,chr10:21972697 chr10:22146413,chr10:22146406 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none PHD-finger(100%),PHD-zinc-finger_like_domain(100%)| PHD(100%),PHD_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)| 8 2 7 83 38 ENST00000631589.1 unknown downstream upstream mismatches(1) GCTCAAACTTCTGGCATAGAAGAAGAAACTGTAAAGGAAAAGAAAAGGAAAGGAAATAAACAAAGTAAGCATGGGCCTGGCAGACCCAAAGGAAACAAAAATCAAGAGAATGTTTCTCATCTCTCAGTTTCTTCTGCTTCACCAACATCATCTGTAGCATCAGCTGCAGGAAGCATAACAAGCTCTAGTCTGCAGAAATCTCCTACATTGCTCAGGAATGGAAGTTTACAGAGCCTCAGTGTTGGCTCATCTCCAGTTGGTTCAG___AAATTTCCATGCAGTATCGGCATGATGGAGCTTGCCCAACAACTA|GTTACAGAACATATAATCAATTTAAAAATACCCAAGAAGGGCATTTTGGAGGTTACAAAAATTTCCTGGGGTTACAAGCCGAACACAACCAACAAAGAAGATTGGTTTTTGTCAGATTCCAAGAGAATGTGTACTTTCTTCAAACCCACCAGGAGAGCAGAAACAGACTG___GAATCTACCCAAGAGAAATGAA AQTSGIEEETVKEKKRKGNKQSKHGPGRPKGNKNQENVSHLSVSSASPTSSVASAAGSITSSSLQKSPTLLRNGSLQSLSVGSSPVGSEISMQYRHDGACPTT|syrtynqfkntqeghfggyknflglqaehnqqrrlvfvrfqenvyflqthqesrnrlestqek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 13458 PIAS2::ST8SIA5 ENSG00000078043.16::ENSG00000101638.14 RKO SRR8615803 SRR8670762 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIAS2 ENSG00000078043.16 protein_coding - - chr18:46803218-46920160:- chr18:46820933:- chr18:44383181-44500123:- chr18:44400896:- ST8SIA5 ENSG00000101638.14 protein_coding - - chr18:46667821-46759257:- chr18:46704664:- chr18:44247784-44339220:- chr18:44284627:- chr18:46815310,chr18:46815318 chr18:46710676,chr18:46710660 NA NA chr18:44395273,chr18:44395281 chr18:44290639,chr18:44290623 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none MIZ/SP-RING_zinc_finger(100%),PINIT_domain(100%)|Glycosyltransferase_family_29_(sialyltransferase)(100%) PINIT(100%),zf-MIZ(100%)|Glyco_transf_29(100%) 0 1 2 175 5 ENST00000585916.6 ENST00000591375.1 upstream downstream none CGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCTTTATGTCAGAAACACAAAGCAGCCCAACCAAAGG___GGTTCTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGTGTGACTTCG...CGCCAATATCAAGCATGTCATCAGATTTGCCAG|GTACTTTGAATTTTATGAGGGGCCTTTTGAATATAACTCCACAAGATGCCTGGAGCTGAGGCACGAAATATTGGAAGTGAAGGTGCTGTCCAT___GGTGAAGCAGTCAGAGCTGTTCGACAGGTGGAAGAGCCTCCAGATGTGCAAATGGGCGATGAACATCTCTGAGGCCAACC PISSMSSDLP|gTLNFMRGLLNITPQDAWS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13459 ENSG00000290576::BLTP3B ENSG00000290576.1::ENSG00000111647.13 RKO SRR8615803 SRR8670762 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2365 TRUE 914 ENSG00000290576 ENSG00000290576.1 lncRNA - - chr12:100173196-100199783:- chr12:100177043:- chr12:100566974-100593561:- chr12:100570821:- BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100097505:- chr12:100422233-100536652:- chr12:100491283:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none none none 1 1 1 19 29 ENST00000548404.6 ENST00000279907.12 upstream downstream none GGAGAGGGTATGTAATTTTGCTGATGTCATGAAGCTAGACTCAGACCCTCTCTGAAAGTAGAGGCTCCAGGAACA___AAATTTGATGTCTTCTTTCCATCCTG...AAAGAAGGAGCCAACCCCTGAAGGAAACAAAG___TTTCACAAAGGCTGAAAAATTTGCCTCATACTTCCCTCAAAGCCAAACAGTTGCTTCAAACTTCATCTACAAATAGAG|GTTTTGACTTTTAAAGAAATAAATTGGCAGATGATAAGAATAGAGGCAGATGCCACCCAAAGTTCACATCTTGAAA...TAGAAAAATCAACAGAACAAAGGAAGAGTATGGCTCCTGAACCTACACAG___AGCTCTACAGTAGTCGCATCTGCCCAGCAAGTGAAGACAACGCAAACTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13460 ENSG00000290576::BLTP3B ENSG00000290576.1::ENSG00000111647.13 RKO SRR8615803 SRR8670762 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2365 TRUE 914 ENSG00000290576 ENSG00000290576.1 lncRNA - - chr12:100173196-100199783:- chr12:100180553:- chr12:100566974-100593561:- chr12:100574331:- BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100095837:- chr12:100422233-100536652:- chr12:100489615:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none none none 1 0 0 19 34 ENST00000550096.5 ENST00000279907.12 upstream downstream none CATAATGATAGTCGGAGGTCTGTGTTTTATGCCAATGAAAAGTGGGAATTTTTAGACCCAACCCCTAAGGACCTAGAGGAGTCCATAGTACAGGAAGAAAAGAAGGAGCCAACCCCTGAAGGAAACAAAG|TTAAAGGACTGCAATGTCATAGCAACAAAGTTAGTTCTAATATTGGATGACTTATTATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13477 TP53::GLP2R ENSG00000141510.18::ENSG00000065325.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE TRUE 1334 TRUE 2366 TRUE 915 TP53 ENSG00000141510.18 protein_coding - - chr17:7661779-7687538:- chr17:7687377:- chr17:7565097-7590856:- chr17:7590695:- GLP2R ENSG00000065325.13 protein_coding + + chr17:9822206-9892099:+ chr17:9887932:+ chr17:9725523-9795416:+ chr17:9791249:+ chr17:7678951,chr17:7678953 chr17:9884878,chr17:9884876 NA NA chr17:7582269,chr17:7582271 chr17:9788195,chr17:9788193 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |7_transmembrane_receptor_(Secretin_family)(1%) |7tm_2(0%) 27 60 22 1099 124 ENST00000635293.1 ENST00000574745.5 upstream upstream duplicates(5),low_entropy(1),mismatches(7) CCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGG|GGGTTCCTGGTGGCCTTGCAGTATGGTTTTGCCAATGGAGAG___GTGAAGGCTGAGCTGCGGAAATACTGGGTCCGCTTCTTGCTAGCCCGCCACTCAGGCTGCAGAGCCTGTGTCCTGGGGAAGGACTTCCGGTTCCTAGGAAAATGTCCCAAGAAGCTCTCGGAAGGAGATGGCGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tumor protein p53 1 Yes breast, colorectal, lung, sarcoma, prostate, adrenocortical, glioma, Spitzoid tumour, multiple other tumour types breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types Li-Fraumeni syndrome leukaemia_lymphoma, epithelial, mesenchymal, other oncogene, TSG, fusion missense, nonsense, frameshift, translocation, large_deletion FALSE NA NA NA NA NA NA NA NA NA 13478 TP53::GLP2R ENSG00000141510.18::ENSG00000065325.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2366 TRUE 915 TP53 ENSG00000141510.18 protein_coding - - chr17:7661779-7687538:- chr17:7687377:- chr17:7565097-7590856:- chr17:7590695:- GLP2R ENSG00000065325.13 protein_coding + + chr17:9822206-9892099:+ chr17:9889370:+ chr17:9725523-9795416:+ chr17:9792687:+ chr17:7678951,chr17:7678953 chr17:9884878,chr17:9884876 NA NA chr17:7582269,chr17:7582271 chr17:9788195,chr17:9788193 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none none none 0 5 16 1099 139 ENST00000635293.1 ENST00000574745.5 upstream upstream duplicates(1),mismatches(1) GCCACCGTCCAGGGAGCAGGTAGCTGCTGGGCTCCGGGGACACTTTGCGTTCGGGCTGGGAGCGTGCTTTCCACGACGGTGACACGCTTCCCTGGATTGG|GTGAAGGCTGAGCTGCGGAAATACTGGGTCCGCTTCTTGCTAGCCCGCCACTCAGGCTGCAGAGCCTGTGTCCTGGGGAAGGACTTCCGGTTCCTAGGAAAATGTCCCAAGAAGCTCTCGGAAGGAGATGGCGCTGAGAAGCTTCGGAAGCTGCAGCCCTCACTTAACAGTGGGCGGCTCCTACATCTAGCCATGCGAGGTCTTGGGGAGCTGGGCGCCCAGCCCCAACAGGACCATGCACGCTGGCCCCGGGGCAGCAGCCTGTCCGAGTGCAGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tumor protein p53 1 Yes breast, colorectal, lung, sarcoma, prostate, adrenocortical, glioma, Spitzoid tumour, multiple other tumour types breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types Li-Fraumeni syndrome leukaemia_lymphoma, epithelial, mesenchymal, other oncogene, TSG, fusion missense, nonsense, frameshift, translocation, large_deletion FALSE NA NA NA NA NA NA NA NA NA 13479 MYH9::FOXRED2 ENSG00000100345.23::ENSG00000100350.16 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE TRUE 1335 FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36314145:- chr22:36677326-36784055:- chr22:36710190:- FOXRED2 ENSG00000100350.16 protein_coding - - chr22:36487190-36507221:- chr22:36501407:- chr22:36883237-36903268:- chr22:36897454:- chr22:36312166,chr22:36312172 chr22:36503397,chr22:36503400 NA NA chr22:36708211,chr22:36708217 chr22:36899444,chr22:36899447 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(63%)| Myosin_N(100%),Myosin_head(77%)|Pyr_redox_3(0%) 20 16 13 2170 305 ENST00000685801.1 ENST00000684868.1 upstream downstream mismatches(10),multimappers(1) CTGGCTGGTGCTGCGCATCAACAAGGCTCTGGACAAGACCAAGAGGCAGGGCGCCTCCTTCATCGGGATCCTGGACATTGCCGGCTTCGAGATCTTTGAT___CTGAACTCGTTTGAGCAGCTGTGCATCAATTACACCAATGAGAAGCTGCAGCAGCTCTTCAACCACACCATGTTCATCCTGGAGCAGGAGGAGTACCAGCGCGAGGGCATCGAGTGGAACTTCATCGACTTTGGCCTCGACCTGCAGCCCTGCATCGACCTCATTGAGAAGCCA|GTCCCTCAGACTTAACTCGGGAAATGCATTCGGCAAGAAGTACCCGCTGATTCGAGCTAGCTACGAATCCAAAGGAAGCCGGGGTCTGTTTATCCTGGGTACTGCCAGCCACTCGGTGGACTACCGGAAATCTGCTGGGGGCTTCATCCACGGATTCCGATACACAG___TGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCACCACAGCGTCACCTGGCCCGCCACTGAGCTCCCC WLVLRINKALDKTKRQGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIEKP|vpqt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 36783852,36737415 FALSE,FALSE 36886314,36889850 FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 13480 GALK2::ATOSA ENSG00000156958.15::ENSG00000047346.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE TRUE 1336 TRUE 2367 TRUE 916 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49201250:+ chr15:49447853-49660066:+ chr15:49493447:+ ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52613857:- chr15:52873514-53002014:- chr15:52906054:- chr15:49216983,chr15:49216984 chr15:52665605,chr15:52665604 NA NA chr15:49509180,chr15:49509181 chr15:52957802,chr15:52957801 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Galactokinase_galactose-binding_signature(47%)|Chromosome_segregation_during_meiosis(100%),Domain_of_unknown_function_(DUF4210)(100%) GalKase_gal_bdg(0%)|Chromosome_seg(100%),DUF4210(100%) 10 7 14 339 99 ENST00000396509.6 ENST00000561490.5 downstream downstream mismatches(1) TGAAACTACAGGAGAAAGAAGGATCTAGCGAAATATGGCTACAGAGAGCCCTGCTACGCGTCGGGTCCAGG...___GTTACTGAAGCTAAAGGAGATGTTTAACTCCAAGTTTGGATCTATTCCCAAGTTTTATGTTCGAGCACCAGGAAGAGTCAACATAATAG|ATACTCTGGATGAATATTTTGAATATGATGCAGAGGAGTTCTTGGTCTCTTTGGCCTTGCTGATAACAGAAGGACGAACACCTGAATGTTCTGTAAAAGGTCGAACAGAAAGCTTTCATTGCCCTCCAGCACAGTCTTGTTACCCAGTAACTACC MFNSKFGSIPKFYVRAPGRVNII|dTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13481 GALK2::ATOSA ENSG00000156958.15::ENSG00000047346.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2367 TRUE 916 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49201250:+ chr15:49447853-49660066:+ chr15:49493447:+ ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52658797:- chr15:52873514-53002014:- chr15:52950994:- chr15:49216983,chr15:49216984 chr15:52665605,chr15:52665604 NA NA chr15:49509180,chr15:49509181 chr15:52957802,chr15:52957801 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Galactokinase_galactose-binding_signature(47%)|Chromosome_segregation_during_meiosis(100%),Domain_of_unknown_function_(DUF4210)(100%) GalKase_gal_bdg(0%)|Chromosome_seg(100%),DUF4210(100%) 1 1 14 339 10 ENST00000327171.7 ENST00000562351.2 downstream downstream duplicates(1) ACGCATCTCATTCCGGTGAAAGTAAGGGACAcCTTAGGACCAGAAGCCTTTCGCGGAGAAAAGGCTGACATGCCCGTCCTATATGACAG___...GATCTAGCGAAATATGGCTACAGAGAGCCCTGCTACGCGTCGGGTCCAGGTGGCAGAACATCCTAG___GTTACTGAAGCTAAAGGAGATGTTTAACTCCAAGTTTGGATCTATTCCCAAGTTTTATGTTCGAGCACCAGGAAGAGTCAACATAATAG|AAACGAGGTCTCACTCTGTTGCTCAGCCTGGTCTTAAACTCATGTCCTCAAGCAATCTTCCTGTATCAGCCTCCTAAAGTCTGG i*rnmatespatrrvqvaehpRLLKLKEMFNSKFGSIPKFYVRAPGRVNII|eTRSHSVAQPGLKLMSSSNLPVSAS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13482 GALK2::ATOSA ENSG00000156958.15::ENSG00000047346.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2367 TRUE 916 GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49201250:+ chr15:49447853-49660066:+ chr15:49493447:+ ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52611777:- chr15:52873514-53002014:- chr15:52903974:- chr15:49216983,chr15:49216984 chr15:52665605,chr15:52665604 NA NA chr15:49509180,chr15:49509181 chr15:52957802,chr15:52957801 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Galactokinase_galactose-binding_signature(47%)|Chromosome_segregation_during_meiosis(100%),Domain_of_unknown_function_(DUF4210)(100%) GalKase_gal_bdg(0%)|Chromosome_seg(100%),DUF4210(100%) 0 1 3 339 114 ENST00000560031.6 ENST00000561490.5 downstream downstream none GATCTAGCGAAATATGGCTACAGAGAGCCCTGCTACGCGTCGGGTCCAGGTGGCAGAACATCCTAG___GTTACTGAAGCTAAAGGAGATGTTTAACTCCAAGTTTGGATCTATTCCCAAGTTTTATGTTCGAGCACCAGGAAGAGTCAACATAATAG|TGCCGCCAAGCCAGACGAACTAGGTCTGAGGTCACATTGTTGTGGAAGAATAACCTTCCAATCATGGTGGAAATGATGCTACTACCAGACTGCTGCTACAGCGATGATGGGCCCACCACAGAGGGAATTGATCTAAATGATCCTaCG MATESPATRRVQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNII|vppsqtn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13483 UTP4::VAC14 ENSG00000141076.18::ENSG00000103043.15 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2368 TRUE 917 UTP4 ENSG00000141076.18 protein_coding + + chr16:69131291-69231130:+ chr16:69139914:+ chr16:69165194-69265033:+ chr16:69173817:+ VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70747358:- chr16:70721342-70835063:- chr16:70781261:- chr16:69140526,chr16:69140524 chr16:70748246,chr16:70748248 NA NA chr16:69174429,chr16:69174427 chr16:70782149,chr16:70782151 NA NA sense sense unknown CDS/splice-site intron inversion high none WD_domain__G-beta_repeat(100%)|Vacuolar_protein_14_C-terminal_Fig4p_binding(100%) ANAPC4_WD40(37%),WD40(79%)|Vac14_Fig4_bd(100%) 9 1 10 638 20 ENST00000562237.5 ENST00000261776.10 downstream downstream mismatches(2) GAAACTATTTCAAATTACCCCAGACAAAATCCAGTTTGAAAGAAATTTTGATCGGCAGAAAA___GTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAG|AAAGAAGCCCTGTATGTACCCTGCACCCGTTAGGAGTCACTCCCCATGCCTCCCTCCCCACGCCCCTGGCGACCACAAATCCAC...TTTGCCTGTTAATGGAGTCATCATACAGGATGTGGACTTTGTGGCTGGCTTCTCGGCAGGTGTTTTCAAGGTTCATCCACGTGTAGCAG___GTGATCCTGAAGGACCTGGAGGTGCTGGCAGAAATCGCTTCCTCCCCCGCAGGCCAGACGGATGACCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13484 UTP4::VAC14 ENSG00000141076.18::ENSG00000103043.15 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2368 TRUE 917 UTP4 ENSG00000141076.18 protein_coding + + chr16:69131291-69231130:+ chr16:69139914:+ chr16:69165194-69265033:+ chr16:69173817:+ VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70744579:- chr16:70721342-70835063:- chr16:70778482:- chr16:69140526,chr16:69140524 chr16:70748246,chr16:70748248 NA NA chr16:69174429,chr16:69174427 chr16:70782149,chr16:70782151 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none WD_domain__G-beta_repeat(100%)|Vacuolar_protein_14_C-terminal_Fig4p_binding(100%) ANAPC4_WD40(37%),WD40(79%)|Vac14_Fig4_bd(100%) 8 5 6 638 332 ENST00000562237.5 ENST00000261776.10 downstream downstream duplicates(1),inconsistently_clipped(1),mismatches(3) GACAAAATCCAGTTTGAAAGAAATTTTGATCGGCAGAAAA___GTCGCATCCTGAGTCTCAGCTGGCATCCCTCTGGTACCCACATTGCAGCTGGTTCCATAGACTACATTAGTGTGTTTGATGTCAAATCAG|GTGATCCTGAAGGACCTGGAGGTGCTGGCAGAAATCGCTTCCTCCCCCGCAGGCCAGACGGATGACCCAGGCCCCCTCGATGGCCCTGACCTCCAGGCCAGCCACTCAGAGCTCCAGGTGCCCACCCCTGGCAGAGCCGGCCTACTGAACACCTCTG___GTACCAAAGGCTTAGAATGTTCTCCTTCAACTCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13487 CCDC57::PACS1 ENSG00000176155.21::ENSG00000175115.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE FALSE TRUE 1337 TRUE 2369 TRUE 918 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82151560:- chr17:80059336-80170754:- chr17:80109436:- PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66193486:+ chr11:65837743-66012215:+ chr11:65960957:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |PACS-1_cytosolic_sorting_protein(100%) |Pacs-1(100%) 4 1 6 169 110 ENST00000694881.1 ENST00000320580.9 upstream upstream none CAGGAAGCAGCCCCCAGCCTCGGACGCCGTGGCCCTTGGGAGAGAG___GGCCTCACCAAGAGAGGGCCTATGGAGGCCGAGGACCAGGGGGAGCTTTTCCTGCACCTCCGGTCAGTGGCACGTGCCCCCCAGACCTTATCTATGCACCGACTCCAGAGAAAGCTGAAGGAGGCAGCCAGAAAAATCATCAGCCTCCGCCTGGAGAAAGAGCAGCTCATCGAGATGGGGAACAGGCTCCGTGCAGAGCTGGGCCGACCCGAAA|GCTATTCAGCTTGACCCTGAAGAAACTCGTCATGCTAAAAGAAATGGACAAAGATCTTAACTCAGTGGTCATCGCTGTGAAGCTGCAG___GGTTCAAAAAGAATTCTTCGCTCCAACGAGATCGTCCTTCCAGCTAGTGGACTGGTGGAAACAGAGCTCCAATTAACCTTCTCCCTTCAG___TACCCTCATTTCCTTAAG RKQPPASDAVALGREGLTKRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMGNRLRAELGRPE|sysa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13488 CCDC57::PACS1 ENSG00000176155.21::ENSG00000175115.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2369 TRUE 918 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82157748:- chr17:80059336-80170754:- chr17:80115624:- PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66193486:+ chr11:65837743-66012215:+ chr11:65960957:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |PACS-1_cytosolic_sorting_protein(100%) |Pacs-1(100%) 0 1 0 135 110 ENST00000694881.1 ENST00000320580.9 upstream upstream none CAGGCAGGAAGCAGCCCCCAGCCTCGGACGCCGTGGCCCTTGGGAGAGAG|GCTATTCAGCTTGACCCTGAAGAAACTCGTCATGCTAAAAGAAATGGACAA...CTGCGGCTTCAGAAACACTACTGGGACCACCTCTGTCTTCCTCCTCTCAGCACAGCAAGGTGCACAGTGGAAAGATAACAGAGCTCACAGGACCTTCTGAG GRKQPPASDAVALGRE|aiqldpeetrhakrng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13494 FBXO39::RPAIN ENSG00000177294.7::ENSG00000129197.15 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXO39 ENSG00000177294.7 protein_coding + + chr17:6776215-6797101:+ chr17:6776272:+ chr17:6679534-6700420:+ chr17:6679591:+ RPAIN ENSG00000129197.15 protein_coding + + chr17:5419641-5432877:+ chr17:5421296:+ chr17:5322961-5336197:+ chr17:5324616:+ chr17:6776587,chr17:6776587 chr17:5419717,chr17:5419714 NA NA chr17:6679906,chr17:6679906 chr17:5323037,chr17:5323034 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Replication_protein_A_interacting_C-terminal(100%),Replication_protein_A_interacting_N-terminal(50%),Replication_protein_A_interacting_middle(100%) |RPA_interact_C(100%),RPA_interact_M(100%),RPA_interact_N(5%) 1 2 2 7 495 ENST00000321535.5 ENST00000381208.9 downstream upstream duplicates(1),mismatches(1) GGCAACTGCAGGTTTGGGGCTCTGCGACCCGGGGGCAGGAACAGAGCCTTGCAGGCGGCAGCGCGTCACAAAGGCGGCCGGAGCTTGGCATTTAGCTTGGGCCAGAGCAAGGCGCAGACCCGGGGCGCCCATGGAGTTGGCGTCGGAGCAACAGCTGCGCGGGCGGAGCAG|AGATGCCTGGAGAGAATGAGAAACAGCCGGGACAGGCTCCTAAACAGGTACCGCCAGGCTGGAAGCAGTGGGCCAGGGAATTCTtAGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAGAGTGGAATGCTTTGCAGTCAGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13495 CYP2U1-AS1::FRAS1 ENSG00000245293.5::ENSG00000138759.20 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYP2U1-AS1 ENSG00000245293.5 lncRNA - - chr4:107863473-107989724:- chr4:107989568:- chr4:108784629-108910880:- chr4:108910724:- FRAS1 ENSG00000138759.20 protein_coding + - chr4:78057323-78544269:+ chr4:78213476:- chr4:78978477-79465423:+ chr4:79134630:- chr4:107972442,chr4:107972444 chr4:78232780,chr4:78232779 NA NA chr4:108893598,chr4:108893600 chr4:79153934,chr4:79153933 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 3 0 13 3 ENST00000687236.1 unknown upstream downstream none CTGGCGGCTGGCGTTCTGGTGTGGGGCCGAGAACAGACCCTTCTTCTGAAAAGCCACTGGCCCCTTGTTCTATGAA|AGACAGACAAGAAAGAAATGATGTCCCAGCCTCTTTTGCTGCAAGTGTGTTTACCTGACTGCATTTTGGCCAACGGCCAAGTCAATGGAAATATCG...GAGAAATATGTTCATGTTCTGCCCTTTCCCTTGCAATGCAAATGGGGGGACAAACCTTATTGATCATGCAACCTTGAGGGATGTATGGATCTACAAAACAGAAGGAACTTGGATCTCCAAAATTGTGGAGCCACATTCTAATCATGGTAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13499 MIR3171HG::ENSG00000258081 ENSG00000258932.5::ENSG00000258081.4 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MIR3171HG ENSG00000258932.5 transcribed_processed_pseudogene - - chr14:27258717-27845286:- chr14:27656338:- chr14:27727923-28314492:- chr14:28125544:- ENSG00000258081 ENSG00000258081.4 lncRNA + - chr14:26599755-27295516:+ chr14:27220802:- chr14:27068961-27764722:+ chr14:27690008:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 2 0 1 55 10 ENST00000556890.1 unknown upstream downstream mismatches(1) GAACAGAGTTGTTGTTCAGCAGAAATAATCAAGAGTTGACATCATACCAGGTAAAAAATAGAAGCGGTAATTTTGAAGGTGCTGTCAGAAGAGTTATTGAAGTGGTCATGAACTCTAAAGTTACAGAGGCAATTATGTAAAGATAAAAGATAAAG|CTTTGTTTGTGCGTTTTGTACAACTCTTTGTCCAAGATGACAAGAACCTGGACACCCTCCcCCGGTGACATATTTTGGTGAGCCAGCCAGGAGGAAAAG___TCTTTCAGACGCTGATTCCTGGTAGCTCATCGGAAATTGAGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13501 UBAP2::CCDC171 ENSG00000137073.24::ENSG00000164989.17 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE TRUE 1338 TRUE 2372 TRUE 919 UBAP2 ENSG00000137073.24 protein_coding - - chr9:33921693-34049388:- chr9:34048825:- chr9:33921691-34049386:- chr9:34048823:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15846702:+ chr9:15553041-16061661:+ chr9:15846700:+ chr9:34038569,chr9:34038575 chr9:15829345,chr9:15829339 NA NA chr9:34038567,chr9:34038573 chr9:15829343,chr9:15829337 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 0 139 0 129 396 ENST00000379238.7 ENST00000380701.8 upstream upstream duplicates(18),mismatches(5) GCGGCGGCGGCGGCAGCGGGTCTTGGGTCCTCCGAGAGCAGCAGCG|AGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAA___AGACAAAGAATGTGTTGCTAATCACATGAGAGCAGTAGAAAATACGCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13502 UBAP2::CCDC171 ENSG00000137073.24::ENSG00000164989.17 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2372 TRUE 919 UBAP2 ENSG00000137073.24 protein_coding - - chr9:33921693-34049388:- chr9:34049149:- chr9:33921691-34049386:- chr9:34049147:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15846702:+ chr9:15553041-16061661:+ chr9:15846700:+ chr9:34038569,chr9:34038575 chr9:15829345,chr9:15829339 NA NA chr9:34038567,chr9:34038573 chr9:15829343,chr9:15829337 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none none 0 7 0 6 396 ENST00000682239.1 ENST00000380701.8 upstream upstream none CGGtGCGACGACGAGCTGCAGTTGTGGGCACCTTGTATGCG|AGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAA___AGACAAAGAATGTGTTGCTAATCAC...GTCTGCGGCAAGTAGGAATGACTTCACCCTACAGCTACCCAAACTGCACCTGGAGACCTTTGCAATGGAGGGGCTCAAGGGCGGGCCAGAGGTGGTAGCA...GAAATGgCcTCTCAaCGAAGTCACATTGCAGCCTTGAAATCAGAACTTCACACAGCTTGTTTACGTGAAAATGCAAGTTTACAATCA___ATAGGATCACGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13503 UBAP2::CCDC171 ENSG00000137073.24::ENSG00000164989.17 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2372 TRUE 919 UBAP2 ENSG00000137073.24 protein_coding - - chr9:33921693-34049388:- chr9:34048878:- chr9:33921691-34049386:- chr9:34048876:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15846702:+ chr9:15553041-16061661:+ chr9:15846700:+ chr9:34038569,chr9:34038575 chr9:15829345,chr9:15829339 NA NA chr9:34038567,chr9:34038573 chr9:15829343,chr9:15829337 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 0 2 0 11 396 ENST00000681980.1 ENST00000380701.8 upstream upstream duplicates(1) CCGCCGCTTTGTAAGAGGCACATTGGCAG|AGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13506 CDC42EP4::MLST8 ENSG00000179604.10::ENSG00000167965.18 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2373 TRUE 920 CDC42EP4 ENSG00000179604.10 protein_coding - - chr17:73283624-73312005:- chr17:73284314:- chr17:71279763-71308144:- chr17:71280453:- MLST8 ENSG00000167965.18 protein_coding + + chr16:2204248-2209453:+ chr16:2205303:+ chr16:2254249-2259454:+ chr16:2255304:+ NA NA NA NA NA NA NA NA sense sense unknown 3'UTR 5'UTR translocation medium none Cdc42_effector(100%),P21-Rho-binding_domain(100%)|WD_domain__G-beta_repeat(100%) BORG_CEP(100%),PBD(100%)|WD40(100%) 4 0 2 86 15 ENST00000335793.4 ENST00000564088.5 upstream upstream low_entropy(1) GGCGATTAGCGGACTGGAGTCTGGTGGCGATTAGCGGACTGGAGTCTGGGGACATCCGTGGCAAAGACACCAGCTCAACTTTAGTGCTTCCCAACTTTATTTAGAATGACATGGGGTGGGTGTCTGGTGTGTGTGTTTTCCCTACGCACCTCCCATAGCTATTAACAACTGAGGAAGGCCAGTGCAGAATATTTTTGGAGAACGATTTTTTTTTTAAATAATATATCATTCCTATGGGGGGAAAGCCTTTTTTTTCTT|CGCCGGGCCCGCGGCCGCGCACGGGGACCGCTCCGAGTTCCTCCCGGCGGGAACCCCCCGCCCCAGAACTTTGGTCTCGTCCCACCCACCCCCGCCCGCGCCATGGTCTCGCCCTAGGGAGCCAT...CGCCCGTAAG___ATGCTCTGACCTTTGACCCCTGCCGTTCAGCTCTAGGGCCCGTGCAGGCCACACCATGAACACCTCCCCAGGCACGGTGGGCAGTGACCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13507 CDC42EP4::MLST8 ENSG00000179604.10::ENSG00000167965.18 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2373 TRUE 920 CDC42EP4 ENSG00000179604.10 protein_coding - - chr17:73283624-73312005:- chr17:73311893:- chr17:71279763-71308144:- chr17:71308032:- MLST8 ENSG00000167965.18 protein_coding + + chr16:2204248-2209453:+ chr16:2206031:+ chr16:2254249-2259454:+ chr16:2256032:+ chr17:73284313,chr17:73284315 chr16:2205304,chr16:2205302 NA NA chr17:71280452,chr17:71280454 chr16:2255305,chr16:2255303 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation low none |WD_domain__G-beta_repeat(100%) |WD40(100%) 0 1 0 222 325 ENST00000335793.4 ENST00000382450.8 upstream upstream none CGCTGACAGGGGCCGCCAGCCCCTCCGCCGCGCGGAGCCCACGAAGGGGACAGCGCAGCCGGCCCAGAGCTCGGGgCTCCGGGGACCGAG|ATGCTCTGACC...GCtCGTGCAGGCCACACCATGAACACCTCCCCAGGCACGGTGGGCAGTGACCCGGTCATCCTGGCCACTGC?GGCTACGACCACAtCGTGCGCTTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13514 CCDC171::KDM4C ENSG00000164989.17::ENSG00000107077.19 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15988536:+ chr9:15553041-16061661:+ chr9:15988534:+ KDM4C ENSG00000107077.19 protein_coding + - chr9:6720863-7175648:+ chr9:7145592:- chr9:6720863-7175648:+ chr9:7145592:- chr9:15989245 chr9:7145709 NA NA chr9:15989243 chr9:7145709 NA NA sense antisense stop-codon intron intron inversion/3'-3' medium none none none 2 1 2 6 7 ENST00000380701.8 unknown downstream downstream none CTATGATTAAAAGTTTCATGGATGTCTACCAGCTTGCAAGCACTAGAATCATGACATTAGAGAAGGAAATGACATCTCATCGAAGTCACATTGCAGCCTTG...CATTCAAATCTCTCCATTCCTTCAAGAGCTCCTCTTCCTGCTGACACAACTG___GCAGTTCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGTTCCCAGCTTGAGTGACACAGAAGACGGGTGATTTCTCCATTTCCAACTGAG|CGTTCCAGAATGGATCTGAAAACTCCTCACCAGAGGTATGGCAGAGGAGATGTCTGGCTGTGGGTGGGAGTTC...___CCAAATTCAAGAGGGATAAATGCTCAATTTAAATGTTCGTGTGTCAAGATGGAAGCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13541 DPP3::OGFOD3 ENSG00000254986.8::ENSG00000181396.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPP3 ENSG00000254986.8 protein_coding + + chr11:66480013-66509657:+ chr11:66491756:+ chr11:66247484-66277128:+ chr11:66259227:+ OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82392534:- chr17:80347086-80376513:- chr17:80350410:- chr11:66492553,chr11:66492554 chr17:82393851,chr17:82393850 NA NA chr11:66260024,chr11:66260025 chr17:80351727,chr17:80351726 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Peptidase_family_M49(33%)|2OG-Fe(II)_oxygenase_superfamily(35%) Peptidase_M49(22%)|2OG-FeII_Oxy_3(0%) 0 2 0 340 595 ENST00000532677.5 ENST00000313056.10 downstream downstream none GCCCCATCGTGGAGAG___TTACATCGGGTTCATCGAGAGCTACCGCGACCCCTTTGGTTCCCGAGGAGAATTTGAAG|GTCGCGTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACAC...TCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAGCCAGCAGCCGGGCCAAGGTAACTTCAGGAGGGCCCGTGTGGAGGCAGCCGCGCCAGTCG PIVESYIGFIESYRDPFGSRGEFE|gRVSFFTSGSENL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13544 ENSG00000267318::VMP1 ENSG00000267318.1::ENSG00000062716.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267318 ENSG00000267318.1 protein_coding + + chr17:59940908-59973101:+ chr17:59966467:+ chr17:58018269-58050462:+ chr17:58043828:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59969772,chr17:59969770,chr17:59969773 chr17:59832747,chr17:59832752,chr17:59832745 NA NA chr17:58047133,chr17:58047131,chr17:58047134 chr17:57910108,chr17:57910113,chr17:57910106 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication low none none Pkinase_C(100%),Prok-RING_4(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%)| 0 1 1 8 3567 ENST00000591035.1 ENST00000262291.9 downstream upstream none CAGGCCTTGTCAGAACCCGAGATGAGAGGAGAGAG___ATTTCTGGTTCAGTAAGGGTGAGAGCCAGGCTCCAGACTATAGTGAATTTTCCGAGGAGATATGT|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGC...AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13545 RNFT1-DT::VMP1 ENSG00000267302.5::ENSG00000062716.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNFT1-DT ENSG00000267302.5 lncRNA + + chr17:59964832-59996972:+ chr17:59966467:+ chr17:58042193-58074333:+ chr17:58043828:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59969772,chr17:59969770,chr17:59969773 chr17:59832747,chr17:59832752,chr17:59832745 NA NA chr17:58047133,chr17:58047131,chr17:58047134 chr17:57910108,chr17:57910113,chr17:57910106 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none none none 0 1 1 8 3567 ENST00000586209.1 ENST00000262291.9 downstream upstream none CAGGCCTTGTCAGAACCCGAGATGAGAGGAGAGAG___ATTTCTGGTTCAGTAAGGGTGAGAGCCAGGCTCCAGACTATAGTGAATTTTCCGAGGAGATATGT|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGC...AGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13555 PLXNB2::DENND6B ENSG00000196576.16::ENSG00000205593.12 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1339 TRUE 2384 TRUE 921 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50307553:- chr22:50713408-50746075:- chr22:50745982:- DENND6B ENSG00000205593.12 protein_coding - - chr22:50309030-50327012:- chr22:50319003:- chr22:50747459-50765441:- chr22:50757432:- chr22:50298801,chr22:50298806,chr22:50298880 chr22:50325600,chr22:50325602,chr22:50325512 NA NA chr22:50737230,chr22:50737235,chr22:50737309 chr22:50764029,chr22:50764031,chr22:50763941 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Stabilization_of_polarity_axis(100%),Transport_protein_Avl9(87%) |Avl9(24%),DENN(100%),SPA(100%) 34 300 12 2882 1133 ENST00000359337.9 ENST00000413817.8 upstream downstream duplicates(28),inconsistently_clipped(2),mismatches(11) CGTCTCCATGGCAGCAGCGCGGGCCAGAGCGCAGCGCCGAGCGCGGCCCGGGCGCCATCGAGCCTTGGCGGCGGACGTGCAG|CTGGTGTATCCGAACGACTTCCGGCTCACAGACAAGGAG___AAAAGCAGCATCTGCTACCTGTCTTTTCCCGACTCGCACTCAG___GCTGCCTTGGAGACACTCAGTTCAGCTTCCGCATGCGCCAGTGTGGAGGGCAGAGGAGCCCCTGGCATGCCGACGACAGGCACTACAACAGCAGGGCCCCTGTGGCACTGCAG___AGGGAGCCGGCACACTACTTCGGCTACGTGTACTTCAGGCAGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13556 PLXNB2::DENND6B ENSG00000196576.16::ENSG00000205593.12 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1340 TRUE 2384 TRUE 921 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50301347:- chr22:50713408-50746075:- chr22:50739776:- DENND6B ENSG00000205593.12 protein_coding - - chr22:50309030-50327012:- chr22:50319003:- chr22:50747459-50765441:- chr22:50757432:- chr22:50298801,chr22:50298806,chr22:50298880 chr22:50325600,chr22:50325602,chr22:50325512 NA NA chr22:50737230,chr22:50737235,chr22:50737309 chr22:50764029,chr22:50764031,chr22:50763941 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Stabilization_of_polarity_axis(100%),Transport_protein_Avl9(87%) |Avl9(24%),DENN(100%),SPA(100%) 44 25 53 370 1133 ENST00000432455.5 ENST00000413817.8 upstream downstream duplicates(8),mismatches(8) GGGGGCCACTCAGAGGAGAGCCTGCAGGTGGGGCTGGGCACCGGCGGGCCGGGAGGCCTCCTTTCAGGAGAGACTCCAAGTGACTGAGCCCCAGAATCCCACGAGAGTCCCTCCGTGGCCGCCTGCTGTCTGACCGCATGTCCTGTCCTGATGAGTTGGTGGTTCCTGCTGTAGCCATCGGCCTCGTGTGCCCCGAGCGCCTGGCGGTGCCCACCCCTCCCACAGGAGGTCCTCAGGAAGCACGGAGACATCG|CTGGTGTATCCGAACGACTTCCGGCTCACAGACAAGGAG___AAAAGCAGCATCTGCTACCTGTCTTTTCCCGACTCGCACTCAG___GCTGCCTTGGAGACACTCAGTTCAGCTTCCGCATGCGCCAGTGTGGAGGGCAGAGGAGCCCCTGGCATGCCGACGACAGGCACTACAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13557 PLXNB2::DENND6B ENSG00000196576.16::ENSG00000205593.12 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2384 TRUE 921 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50307553:- chr22:50713408-50746075:- chr22:50745982:- DENND6B ENSG00000205593.12 protein_coding - - chr22:50309030-50327012:- chr22:50318020:- chr22:50747459-50765441:- chr22:50756449:- chr22:50298801,chr22:50298806,chr22:50298880 chr22:50325600,chr22:50325602,chr22:50325512 NA NA chr22:50737230,chr22:50737235,chr22:50737309 chr22:50764029,chr22:50764031,chr22:50763941 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Stabilization_of_polarity_axis(100%),Transport_protein_Avl9(67%) |Avl9(15%),DENN(100%),SPA(100%) 0 1 3 2882 1216 ENST00000359337.9 ENST00000413817.8 upstream downstream duplicates(1),mismatches(1) CTCCGGCCCCTCCTCGGCCACACAAAGGCCCCGTCTCCATGGCAGCAGCGCGGGCCAGAGCGCAGCGCCGAGCGCGGCCCGGGCGCCATCGAGCCTTGGCGGCGGACGTGCAG|GCTGCCTTGGAGACACTCAGTTCAGCTTCCGCATGCGCCAGTGTGGAGGGCAGAGGAGCCCCTGGCATGCCGACGACAGGCACTACAACAGCAGGGCCCCTGTGGCACTGCAG___AGGGAGCCGGCACACTACTTCGGCTACGTGTACTTCAGGCAGGTGAAGGACAGCTCTGTGAAGAGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13558 RRBP1::ENSG00000285968 ENSG00000125844.17::ENSG00000285968.1 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRBP1 ENSG00000125844.17 protein_coding - - chr20:17613678-17682295:- chr20:17619633:- chr20:17594323-17662940:- chr20:17600278:- ENSG00000285968 ENSG00000285968.1 lncRNA + - chr22:25282613-25320086:+ chr22:25314991:- chr22:25678580-25716053:+ chr22:25710958:- chr20:17619273,chr20:17619278 chr22:25316730,chr22:25316732 NA NA chr20:17599918,chr20:17599923 chr22:25712697,chr22:25712699 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Ribosome_receptor_lysine/proline_rich_region(100%)| Rib_recp_KP_reg(100%)| 126 71 82 3405 366 ENST00000360807.8 unknown upstream downstream duplicates(21),low_entropy(10),mismappers(6),mismatches(32) GCAGAGGAGGAGCTCCAGAAG___TCCCGGGTCACAGTGAAGCATCTCGAAGAGATTGTAGAGAAGCTAAAAGGAGAACTTGAAAGTTCGGACCAG___GTGAGGGAGCACACGTtGCATTTGGAGGCAGAGCTGGAAAAGCACATGGCGGCCGCCAGCGCCGAGTGCCAGAACTACGCCAAGGAGGTGGCAGGG|ATGGAATTTAGCTCAGGCCAGAGTGCCATGGCATGATCTC?GCTCACCATAACCACTGCCTCCCAGGTTCAAGCAACTCTCCTGCCTCAGCCTCCCGAGTAGCT?GGATTACAGGCAAGCGCCATCACGCCCTGCTAATTTTTTGTATTTTTAGTAGAGACGGGCTTTCTCC AEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTlHLEAELEKHMAAASAECQNYAKEVAG|mefssgqsama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13563 NCAPH2::MIR3667HG ENSG00000025770.19::ENSG00000188511.14 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2386 TRUE 922 NCAPH2 ENSG00000025770.19 protein_coding + + chr22:50508224-50524780:+ chr22:50508445:+ chr22:50946653-50963209:+ chr22:50946874:+ MIR3667HG ENSG00000188511.14 lncRNA - - chr22:49414524-49657542:- chr22:49633056:- chr22:49808173-50051190:- chr22:50026704:- chr22:50509076,chr22:50509077 chr22:49633919,chr22:49633918 NA NA chr22:50947505,chr22:50947506 chr22:50027567,chr22:50027566 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Condensin_II_complex_subunit_CAP-H2_or_CNDH2__N-terminal(23%)| CNDH2_N(0%)| 18 20 45 996 176 ENST00000420993.7 unknown downstream downstream duplicates(8),mismatches(22) AGCAAAATGGCGCCAGAACTAGTGGCGGGCTGAGGACGCCGTACCCCTCGGAAGGCAGCCCTGCGGTCCCTTTGCCGCCCGTTCCCTCCCGGACATGGAGGACGTGGAGGCGCGCTTCGCCCACCTCTTGCAGCCCATCCGCGACCTCACCAAGAACTGGGAGGTGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAG|GTGTGACGCAGCTCGAGCGGGGACTCCAGGCCCTGGAGGATTCCTCTCCCCAGGACCTCTTGTGTGCAGCTGGATTGCTTCCCTCCGGTTCTGAAAACAGCCCCGCAGACCCCAGGCCGTGCTCAATGGCAATGAAACCCACTTCTGCTAAACGCAGGAGCGCCTATTTGGAGGAAGATTTTTTCCTTGAAATGATTCCAACTAATTTCATGCCTTTCGTGTAAGAATTCTTCGAACAGCCG MEDVEARFAHLLQPIRDLTKNWEVDVAAQLGEYLEE|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3667 chr22:49543393-49543466:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13564 NCAPH2::MIR3667HG ENSG00000025770.19::ENSG00000188511.14 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2386 TRUE 922 NCAPH2 ENSG00000025770.19 protein_coding + + chr22:50508224-50524780:+ chr22:50508445:+ chr22:50946653-50963209:+ chr22:50946874:+ MIR3667HG ENSG00000188511.14 lncRNA - - chr22:49414524-49657542:- chr22:49620660:- chr22:49808173-50051190:- chr22:50014308:- chr22:50509076,chr22:50509077 chr22:49633919,chr22:49633918 NA NA chr22:50947505,chr22:50947506 chr22:50027567,chr22:50027566 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Condensin_II_complex_subunit_CAP-H2_or_CNDH2__N-terminal(23%)| CNDH2_N(0%)| 0 1 0 996 13 ENST00000420993.7 ENST00000400023.5 downstream downstream mismatches(1) AAAATGGCGCCAGAACTAGTGGCGGGCTGAGGACGCCGTACCCCTCGGAAGGCAGCCCTGCGGTCCCTTTGCCGCCCGTTCCCcCCCGGcCcTGGAGGACG...AAGAACTGGGAGGTGGACGTGGCGGCCCAGCTGGGCGAGTATCTGGAGGAG|GAAAATCTCCATGATGCCAGCAGGCGTGTCCACAGAGGAAGGGGCGAAGA...GAGGAGGACGTCCTGAGATTTGCCACAGCCTGGAGGCGATTGCGCTCGTGACAAAAGCCAGACACAGAAAGACAAATACCACGTTCTAATTTGTGCATaGG KNWEVDVAAQLGEYLEE|enlhdasrrvhrgrge NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3667 chr22:49543393-49543466:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13565 SBF1::PPARA ENSG00000100241.22::ENSG00000186951.17 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SBF1 ENSG00000100241.22 protein_coding - - chr22:50443219-50483923:- chr22:50474786:- chr22:50881648-50922352:- chr22:50913215:- PPARA ENSG00000186951.17 protein_coding + - chr22:46150521-46243755:+ chr22:46167626:- chr22:46546424-46639652:+ chr22:46563525:- chr22:50472694,chr22:50472696 chr22:46167870,chr22:46167869 NA NA chr22:50911123,chr22:50911125 chr22:46563769,chr22:46563768 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none Calc_CGRP_IAPP(100%)| 1 69 3 70 323 ENST00000689129.1 unknown upstream downstream duplicates(11),mismatches(20) CGAGTCCCCGAGCCGCGGAGCCCGCCCGCGCCCCTCGGGCCGCCCCGCGTCCCTCGCCATGGCGCGGCTCGCGGACTACTTCGTGCTGGTGGCGTTCGGGCCGCACCCGCGCG|TCTGGAGTGCAGTGGTGCAATCATGGCTCACTGCAACCTTGACCTCTCTGGGCTCAGGTGATCCTCCCACCTCAGACTACTGTGCAGCTGGGACTACAG___AGGCTTCCTCCTTGAAGAGTCTACAACAGACCTGATACCATAATTGGGCACACATCCTTCTGAAATTCCTTCTAGAAAATGATTTAATCTACTAAGAAAGCCC MARLADYFVLVAFGPHPR|vwsavvqswltatltslgsgdpptsdycaagtteasslkslqqt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13567 PHF12::MAPT ENSG00000109118.14::ENSG00000186868.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1344 FALSE NA FALSE NA PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950895:- chr17:27232268-27278789:- chr17:27277913:- MAPT ENSG00000186868.18 protein_coding + + chr17:45894527-46028334:+ chr17:45991460:+ chr17:43971893-44105700:+ chr17:44068826:+ chr17:28950488,chr17:28950493,chr17:28950492 chr17:45989885,chr17:45989880,chr17:45989882 NA NA chr17:27277506,chr17:27277511,chr17:27277510 chr17:44067251,chr17:44067246,chr17:44067248 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Tau_and_MAP_protein__tubulin-binding_repeat(100%) |Tubulin-binding(100%) 13 16 7 219 76 ENST00000332830.9 ENST00000262410.10 upstream upstream duplicates(3),mismatches(11) GCCGGGGTCAGGAGCGCCCCCTCCCCTCACCTCCCCCCTCCCCCCGGGGTTGGGGGGGCCGGAGCAGAGAGCACCCAGCCCGGGAGGTGGATGAATGTGGGAGAAAATGGAGACCAAGACGATCGTGTACGACTTGGACACATCAGGGGGGCTGATGGAG|GGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTG___GTGAACCTCCAAAATCAGGGGATCGCAGCGGC MWEKMETKTIVYDLDTSGGLME|GADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13568 DIP2B::PPHLN1 ENSG00000066084.13::ENSG00000134283.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIP2B ENSG00000066084.13 protein_coding + + chr12:50504985-50748657:+ chr12:50660319:+ chr12:50898768-51142440:+ chr12:51054102:+ PPHLN1 ENSG00000134283.18 protein_coding + + chr12:42238447-42459715:+ chr12:42335883:+ chr12:42632249-42853517:+ chr12:42729685:+ chr12:50666172 chr12:42270088 NA NA chr12:51059955 chr12:42663890 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none DMAP1-binding_Domain(100%)|Transcriptional_regulatory_protein_LGE1(100%) DMAP_binding(100%)|Lge1(100%) 13 5 11 175 1093 ENST00000301180.10 ENST00000317560.13 downstream upstream duplicates(4),mismatches(3),multimappers(1) GATTCAGCAGTACAGAAAGAACTTAGAAACCAGACACCTGCTCCATCTGCAGCTCAAACTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGAGCCAGGGATGAACGATATCGATCAG___ATATCCACACAGAAGCAGTTCAGGCTGCACTGGCAAAGCATAAAGAACAGAAGATGGCTTTGCCCATGCCAACCAAAAGGCGATCCACATTTGTTCAGTCTCCTGCAGATGCCTGCACACCTCCTG|TGGCTTACAGAAGAGACGAAATGTGGTCTGAGGGACGATATGAATATGAAAGAATTCCGAGAGAACGAGCACCTCCTCGAAGTCATCCCAGT___GATGAATCTGGTTATAGATGGACAAGAGACGATCATTCTGCAAGCAGGCAACCTGAA DSAVQKELRNQTPAPSAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPP|vayrrdemwsegryeyeriprerapprshpsdesgyrwtrddhsasrqp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13580 MAPT::IQCJ-SCHIP1 ENSG00000186868.18::ENSG00000283154.3 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAPT ENSG00000186868.18 protein_coding + + chr17:45894527-46028334:+ chr17:45996664:+ chr17:43971893-44105700:+ chr17:44074030:+ IQCJ-SCHIP1 ENSG00000283154.3 protein_coding + + chr3:158962235-159897629:+ chr3:159764443:+ chr3:158680024-159615418:+ chr3:159482232:+ chr17:46006950,chr17:46006946 chr3:159591442,chr3:159591435 NA NA chr17:44084316,chr17:44084312 chr3:159309231,chr3:159309224 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Tau_and_MAP_protein__tubulin-binding_repeat(20%)|Fusion_protein_IQCJ-SCHIP1_with_IQ-like_motif(7%),Schwannomin-interacting_protein_1(100%) Tubulin-binding(1%)|IQCJ-SCHIP1(0%),SCHIP-1(100%) 3 3 4 73 338 ENST00000262410.10 ENST00000485419.7 downstream upstream none GACACCACCCAGCTCTG___GTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCG...TCtAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCGTCTTCCGCCAAGAGCCGCCTGCAGACAGCCCCCGTGCCCATGCCAGACCTGAAGAATGTCAAGTCCAAGATCGGCTCCACTGAGAACCTGAAGCACCAGCCGGGAGGCGGGAAG|GATTACCGAGAGGATGGGATGGATCTAGGCAGTGACGCCGGCAGCAGCAGCAGCAGCAGCCGCGCCAGTTCACAGTCCAACTCCACCAAAGTGACCCCTTGCTCCGAGTGCAAATCTTCATCGTCGCCGGGGGGCAGCCTGGACTTGGTGTCTGCCCTGGAGGACTATGAGGAGCCCTTCCCGGTCTACCAGAAGAAGGTGATTGATGAGTGGGCGCCGGAGGAGGACGG lTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGK|DYREDGMDLGSDAGSSSSSSRASSQSNSTKVTPCSECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEED NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13584 DNAH3::RAI2 ENSG00000158486.15::ENSG00000131831.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2391 TRUE 923 DNAH3 ENSG00000158486.15 protein_coding - - chr16:20933111-21159441:- chr16:21125175:- chr16:20944433-21170762:- chr16:21136496:- RAI2 ENSG00000131831.18 protein_coding - - chrX:17800049-17861337:- chrX:17839105:- chrX:17818169-17879457:- chrX:17857225:- chr16:21123992,chr16:21123998 chrX:17839736,chrX:17839739 NA NA chr16:21135313,chr16:21135319 chrX:17857856,chrX:17857859 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none |Sine_oculis-binding_protein(100%) |SOBP(100%) 4 1 1 7 8 ENST00000261383.3 ENST00000545871.1 upstream downstream none ATTCATTTTGCTCCCAAGAGCAACTATGACTCAAGTCGAAACATTGAGGAATATTTTGCTTCTGTGGCATCATTCATGTCGCTGCAGCTTAGGGAGCTGGTCATTAAGTCACTTGAGGACCTCGTTTCCCTTTTCATGATACACAAA|GCACAGCTGCGTGCACTCTGAGATGTTCCTGTCCATGAGGGATGTTTCTGGAATGATGATGATGATGATGATGACAGTGGCTGTGGTTGGCAGCGGGAAGAAGGAG___GCTTCCCAGGAAGAATGAAGCAGTCAAC IHFAPKSNYDSSRNIEEYFASVASFMSLQLRELVIKSLEDLVSLFMIHK|aqlral* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13585 DNAH3::RAI2 ENSG00000158486.15::ENSG00000131831.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2391 TRUE 923 DNAH3 ENSG00000158486.15 protein_coding - - chr16:20933111-21159441:- chr16:21125175:- chr16:20944433-21170762:- chr16:21136496:- RAI2 ENSG00000131831.18 protein_coding - - chrX:17800049-17861337:- chrX:17837733:- chrX:17818169-17879457:- chrX:17855853:- chr16:21123992,chr16:21123998 chrX:17839736,chrX:17839739 NA NA chr16:21135313,chr16:21135319 chrX:17857856,chrX:17857859 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Sine_oculis-binding_protein(100%) |SOBP(100%) 1 2 0 7 14 ENST00000261383.3 ENST00000545871.1 upstream downstream none GCATCATTCATGTCGCTGCAGCTTAGGGAGCTGGTCATTAAGTCACTTGAGGACCTCGTTTCCCTTTTCATGATACACAAA|CAGGCTTCCCAGGAAGAATGAAGCAGTCAACTTGCATAAGGCCTGTCTTGACTTCgCTCCTTTcGGGG...TCAGAGTTTATGATCCAGGTTTCCCAGTGATTAAATTACTCCTTGGAAG___GGAACTCAGACCTTGGGAAAATCCAGCCTGTTGCCCATCCACAGGATGTCAGTAAGGATTTCAGAGAGTGAAGAAAGAGAAACAAACAGGCTTGCACCTGCACACTGGTGGGCTTTGGTCTTTT ASFMSLQLRELVIKSLEDLVSLFMIHK|qasqee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13586 MECOM::ENSG00000266489 ENSG00000085276.19::ENSG00000266489.3 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2392 TRUE 924 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381187:- chr3:168801287-169381563:- chr3:169098975:- ENSG00000266489 ENSG00000266489.3 lncRNA - - chr18:24516699-24544154:- chr18:24518088:- chr18:22096663-22124118:- chr18:22098052:- chr3:169212523,chr3:169212525 chr18:24534777,chr18:24534776 NA NA chr3:168930311,chr3:168930313 chr18:22114741,chr18:22114740 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 3 0 3 63 6 ENST00000651503.2 ENST00000668994.1 upstream downstream mismatches(1) TAATGAGTGTGTATATGGCAACTACCCTGAAATACCTTTGGAAGAAATGCCAGATGCAGATGGAGTAGCCAGCACTCCCTCCCTCAATATTCAAGAGCCAT...TACAAAGCCCCCATCTACATCCCTGATGATATCCCCATTCCTGCTGAGTTTGAACTTCGAGAGTCAAATATGCCTGGGGCAGGACTAGGAATATGGACCAAAAGGAAGATCGAAGTAGGTGAAAAGTTTGGGCCTTATGTGGGAGAGCAGAGGTCAAACCTGAAAGACCCCAGTTATGGATGGGAG|CTCCCCTCTCCACTGAGAACCATTTTCA...CCCCATTCTgCATGGACACTGGACAAGAGCTCGAGACCCACCCAGTGCAG___TGGTGCTGGGCAGCTCCTCCCTCCCTGAGGGCTGTTCTGCCAACCTCACGACACCATCATAGAAGACTTCAG YKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWE|lpsplrtif NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 13587 MECOM::ENSG00000266489 ENSG00000085276.19::ENSG00000266489.3 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2392 TRUE 924 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381259:- chr3:168801287-169381563:- chr3:169099047:- ENSG00000266489 ENSG00000266489.3 lncRNA - - chr18:24516699-24544154:- chr18:24518088:- chr18:22096663-22124118:- chr18:22098052:- chr3:169212523,chr3:169212525 chr18:24534777,chr18:24534776 NA NA chr3:168930311,chr3:168930313 chr18:22114741,chr18:22114740 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 0 3 61 6 ENST00000651503.2 ENST00000668994.1 upstream downstream none AAGGAAACTGGCCACAA___ATAATGAGTGTGTATATGGCAACTACCCTGAAATACCTTTGGAAGAAATGCCAGATGCAGATGGAGTAGCCAGCACTCCCTCCCTCAATAT...TACAAAGCCCCCATCTACATCCCTGATGATATCCCCATTCCTGCTGAGTTTGAACTTCGAGAGTCAAATATGCCTGGGGCAGGACTAGGAATATGGACCAAAAGGAAGATCGAA|CTCCCCTCTCCACTGAGAACCATT...CCCCATTCTgCATGGACACTGGACAAGAGCTCGAGACCCACCCAGTGCAG___TGGTGCTGGGCAGCTCCTCCCTCCCTGAGGGCTGTTCTGCCAACCTCACGACACCATCATAGAAGACTTCAG YKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIE|lpsplrt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 13588 MECOM::ENSG00000266489 ENSG00000085276.19::ENSG00000266489.3 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2392 TRUE 924 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169663336:- chr3:168801287-169381563:- chr3:169381124:- ENSG00000266489 ENSG00000266489.3 lncRNA - - chr18:24516699-24544154:- chr18:24518088:- chr18:22096663-22124118:- chr18:22098052:- chr3:169212523,chr3:169212525 chr18:24534777,chr18:24534776 NA NA chr3:168930311,chr3:168930313 chr18:22114741,chr18:22114740 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 1 1 119 6 ENST00000651503.2 ENST00000668994.1 upstream downstream none GAGcGAGAGAGAGAGAGAGAGAGACAGGAGAGAGAGGGAGGGAGCGAGAGGGAGAGCAAAAGAAGGAAAGGATCCAAGAAAAAAAAGCCCCAACCACACACCAGCGGCTGCAGGACTGGGCACAGCATGAGATCCAAAGGCAGGGCAAGGAAACTGGCCACAA|CTCCCCTCTCCACTGAGAACCATTTTCATCACTCAATAAAATTCTCCACTTTCACCACCCTTCAACCTTCCATGTGACCCCATTCTTCATGGACACTGGACAAGAGCTCGAGACCCACCCAGTGCAG___TGGTGCTGGGCAGCTCCTCCCTCCCTGAGGGCTGTTCTGCCAACCTCACGACACCATCATAGAAGACTTCAG MRSKGRARKLAT|tplstenhfhhsikfstfttlqpsm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 13589 PPARA::ENSG00000279597 ENSG00000186951.17::ENSG00000279597.1 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPARA ENSG00000186951.17 protein_coding + + chr22:46150521-46243755:+ chr22:46176836:+ chr22:46546424-46639652:+ chr22:46572733:+ ENSG00000279597 ENSG00000279597.1 lncRNA + + chr22:49534062-49534926:+ chr22:49534531:+ chr22:49927711-49928575:+ chr22:49928180:+ chr22:46181494,chr22:46181492 chr22:49533938,chr22:49533933 NA NA chr22:46577391,chr22:46577389 chr22:49927587,chr22:49927582 NA NA sense sense unknown 5'UTR/splice-site exon deletion high none none none 3 1 2 59 12 ENST00000407236.6 ENST00000623197.1 downstream upstream none CGCGGCCCAG___GCTGAAGCTCAGGGCCCTGTCTGCTCTGTGGACTCAACAGTTTGTGGCAAGACAAGCTCAGAACTGAGAAGCTGTCACCACAG___TTCTGGAGGCTGGGAAGTTCAAGATCAAAGTGCCAGCAGATTCAGTGTCATGTGAGGACGTGCTTCCTGCTTCATAGATAAGAG|CATCTTCATTAGCCTGCCTGTGGCCGCACCAAGCGCCAGCACAGCTGGCCTGTCCCCACAGGAGTCCCCGTGTGACTGCACAACCCCATCTGCCCGGTCACCGTCGCACCCCGCTCAGCGTG...CAgGCAGGAGCAGTGATTTACCTGCCAGCCTTTCGCTGGTGCGAAGAACATTTCATTTTGCTAACGATATTTGCTGTTTGATAGAGCTCCTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13591 ENSG00000227388::ZCCHC7 ENSG00000227388.3::ENSG00000147905.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2393 TRUE 925 ENSG00000227388 ENSG00000227388.3 lncRNA + + chr9:35772163-35790432:+ chr9:35772376:+ chr9:35772160-35790429:+ chr9:35772373:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:35781327,chr9:35781324 chr9:37294750,chr9:37294744 NA NA chr9:35781324,chr9:35781321 chr9:37294747,chr9:37294741 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Zinc_knuckle(100%) |zf-CCHC(100%),zf-CCHC_3(100%) 1 4 1 17 532 ENST00000574939.1 ENST00000336755.10 downstream upstream none GTTATGGATTAACTCACCAAGGAAATGAGTGTGGAAAGAAGAATGCAGAAATCTGAGGACTAGAGCCTGGAGATGGGGAGCTTCGAGCTCAGAGGAAGAAGAGGATCTTCATCACGGGGAGACATCAGCTGGATATTGAGATGGAAGGATGACTATGAGTATGAGCTATTATAGAAACCATG|GAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAG___GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGA___AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13592 ENSG00000227388::ZCCHC7 ENSG00000227388.3::ENSG00000147905.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2393 TRUE 925 ENSG00000227388 ENSG00000227388.3 lncRNA + + chr9:35772163-35790432:+ chr9:35772376:+ chr9:35772160-35790429:+ chr9:35772373:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37304188:+ chr9:37120571-37358146:+ chr9:37304185:+ chr9:35781327,chr9:35781324 chr9:37294750,chr9:37294744 NA NA chr9:35781324,chr9:35781321 chr9:37294747,chr9:37294741 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Zinc_knuckle(100%) |zf-CCHC(100%),zf-CCHC_3(100%) 0 1 0 17 572 ENST00000431981.2 ENST00000336755.10 downstream upstream none CAGCTGGATATTGAGATGGAAGGATGACTATGAGTATGAGCTATTATAGAAACCATG|GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13595 ENSG00000285637::FBXO10 ENSG00000285637.2::ENSG00000147912.13 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2394 TRUE 926 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13003435:- chr9:12958502-13034325:- chr9:13003434:- FBXO10 ENSG00000147912.13 protein_coding - - chr9:37510892-37576380:- chr9:37521838:- chr9:37510889-37576377:- chr9:37521835:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Periplasmic_copper-binding_protein_(NosD)(100%) |Beta_helix(22%),NosD(8%) 0 3 1 11 68 ENST00000649120.1 ENST00000432825.7 upstream downstream none GGGAAAAGGGAGACCAAGTCATATCAGGATTTGAATTTGAAAATCATCCAGGAAATCAG|CTAACAAGGGCTGTGGTGTGTGGATGATGTCGTCCAGCCTCCCCCATGTCACCAGCAACCACGTCAGCTACAATGGCCTGTATGGAGTGGCAGTATTTAGCCAGAAGGATGGCTCCAGCGAGTTACCTCGAGGCCACAGGGCTCAAGAGAACTTCAGCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13596 ENSG00000285637::FBXO10 ENSG00000285637.2::ENSG00000147912.13 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2394 TRUE 926 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13003435:- chr9:12958502-13034325:- chr9:13003434:- FBXO10 ENSG00000147912.13 protein_coding - - chr9:37510892-37576380:- chr9:37521901:- chr9:37510889-37576377:- chr9:37521898:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none |Periplasmic_copper-binding_protein_(NosD)(100%) |Beta_helix(22%),NosD(9%) 1 0 1 11 21 ENST00000649120.1 ENST00000432825.7 upstream downstream duplicates(1) AAGAAACAGGGAAAAGGGAGACCAAGTCATATCAGGATTTGAATTTGAAAATCATCCAGGAAATCAG|GGAGACTCAGGTGCCGCTTCACCTGAGTTCAGTGTCGGTG...CCAGCAACCACGTCAGCTACAATGGCCTGTATGGAGTGGCAGTATTTAGCCAGAAGGATGGCTCCAGCGAGTTACCTCGAGGCCACAGGGCTCAAGAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13597 ENSG00000285637::FBXO10 ENSG00000285637.2::ENSG00000147912.13 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2394 TRUE 926 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13003435:- chr9:12958502-13034325:- chr9:13003434:- FBXO10 ENSG00000147912.13 protein_coding - - chr9:37510892-37576380:- chr9:37518438:- chr9:37510889-37576377:- chr9:37518435:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Periplasmic_copper-binding_protein_(NosD)(93%) |Beta_helix(9%),NosD(3%) 1 0 0 11 57 ENST00000649120.1 ENST00000432825.7 upstream downstream none CTGAAGAGAGAGGAAGAAACAGGGAAAAGGGAGACCAAGTCATATCAGGATTTGAATTTGAAAATCATCCAGGAAATCAG|CCTCAGGACTCTATGTCCAGAGCAGCGAGGCACTGCATGTCATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13598 ENSG00000285637::FBXO10 ENSG00000285637.2::ENSG00000147912.13 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2394 TRUE 926 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13029409:- chr9:12958502-13034325:- chr9:13029408:- FBXO10 ENSG00000147912.13 protein_coding - - chr9:37510892-37576380:- chr9:37521838:- chr9:37510889-37576377:- chr9:37521835:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Periplasmic_copper-binding_protein_(NosD)(100%) |Beta_helix(22%),NosD(8%) 0 1 0 17 68 ENST00000649120.1 ENST00000432825.7 upstream downstream none CCGGATGGCCTGACTCATCCCAGA|CTAACAAGGGCTGTGGgGTGTGGATGATGTgGTCCAGCCTCCCCCATGTaACCAGaAACacaGTCAGgTAaAATGG...CATAGCTCTTGTTGAGTCTAACAGTATTAATCACAATGGAG___CCTCAGGACTCTATGTCCAGAGCAGCGAGGCACTGCATGTCATCACCAATGTGATCCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13599 ENSG00000285637::ENSG00000256966 ENSG00000285637.2::ENSG00000256966.6 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2395 TRUE 927 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13003435:- chr9:12958502-13034325:- chr9:13003434:- ENSG00000256966 ENSG00000256966.6 protein_coding - - chr9:37512547-37592469:- chr9:37521838:- chr9:37512544-37592466:- chr9:37521835:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none |Beta_helix(35%),NosD(15%) 0 3 1 11 68 ENST00000649120.1 ENST00000541804.1 upstream downstream none GGGAAAAGGGAGACCAAGTCATATCAGGATTTGAATTTGAAAATCATCCAGGAAATCAG|CTAACAAGGGCTGTGGTGTGTGGATGATGTCGTCCAGCCTCCCCCATGTCACCAGCAACCACGTCAGCTACAATGGCCTGTATGGAGTGGCAGTATTTAGCCAGAAGGATGGCTCCAGCGAGTTACCTCGAGGCCACAGGGCTCAAGAGAACTTCAGCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13600 ENSG00000285637::ENSG00000256966 ENSG00000285637.2::ENSG00000256966.6 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2395 TRUE 927 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13003435:- chr9:12958502-13034325:- chr9:13003434:- ENSG00000256966 ENSG00000256966.6 protein_coding - - chr9:37512547-37592469:- chr9:37518438:- chr9:37512544-37592466:- chr9:37518435:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none |Beta_helix(15%),NosD(6%) 1 0 0 11 57 ENST00000649120.1 ENST00000541804.1 upstream downstream none CTGAAGAGAGAGGAAGAAACAGGGAAAAGGGAGACCAAGTCATATCAGGATTTGAATTTGAAAATCATCCAGGAAATCAG|CCTCAGGACTCTATGTCCAGAGCAGCGAGGCACTGCATGTCATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13601 ENSG00000285637::ENSG00000256966 ENSG00000285637.2::ENSG00000256966.6 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2395 TRUE 927 ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13029409:- chr9:12958502-13034325:- chr9:13029408:- ENSG00000256966 ENSG00000256966.6 protein_coding - - chr9:37512547-37592469:- chr9:37521838:- chr9:37512544-37592466:- chr9:37521835:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none |Beta_helix(35%),NosD(15%) 0 1 0 17 68 ENST00000649120.1 ENST00000541804.1 upstream downstream none CCGGATGGCCTGACTCATCCCAGA|CTAACAAGGGCTGTGGgGTGTGGATGATGTgGTCCAGCCTCCCCCATGTaACCAGaAACacaGTCAGgTAaAATGG...CATAGCTCTTGTTGAGTCTAACAGTATTAATCACAATGGAG___CCTCAGGACTCTATGTCCAGAGCAGCGAGGCACTGCATGTCATCACCAATGTGATCCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13602 SIPA1L3::ZNF420 ENSG00000105738.11::ENSG00000197050.11 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ ZNF420 ENSG00000197050.11 protein_coding + + chr19:37007857-37130368:+ chr19:37127128:+ chr19:37498759-37621270:+ chr19:37618030:+ chr19:37927843 chr19:37117031 NA NA chr19:38418483 chr19:37607933 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |KRAB_box(1%),Zinc-finger_double_domain(100%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-H2C2_2(100%) 1 2 1 72 20 ENST00000222345.11 ENST00000337995.4 downstream upstream none GGCCACCGGAGCTGGCGGCGTCTCCAGCGAGCGGCGCGGAGCTGGACGCCGCGATCGTGGGGCCCGCGAGGCGGGCAGCCGGGGCGTCCAG|ACTTGCCTTCAAGGTGTGCAAGTAAGGACTTATCTCCAGAAAAGAACACTTATGAAACAGAATTATCCCAATGGGAAATGAGTGACAGACTTGAAAACTGTGATCTTGAAGAGTCCAATTCCAGGGATTATTTGGAAGCCAAAGGCAAGATGGAGAAGCAACAAGAAAATCAGAAGGAATATTTCAGGCAAGGGATGATCATATATGACAAAATGTCCATTTTCAACCAGCATACTTACTTATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13603 CHD7::ENSG00000241168 ENSG00000171316.14::ENSG00000241168.1 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60743097:+ chr8:61591299-61780587:+ chr8:61655656:+ ENSG00000241168 ENSG00000241168.1 lncRNA + - chr3:163026396-163232149:+ chr3:163035431:- chr3:162744184-162949937:+ chr3:162753219:- chr8:60748787,chr8:60748785,chr8:60748786 chr3:163041874,chr3:163041876,chr3:163041875 NA NA chr8:61661346,chr8:61661344,chr8:61661345 chr3:162759662,chr3:162759664,chr3:162759663 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 1 1 93 2 ENST00000423902.7 unknown downstream downstream none CCGGGCTTGCACCACCAGTCTTCACCTCCACACCCTCATCACCAGCCTTGGGCACAGCTCCACCCATCACCCCAGAACACCCCGCAGAAAGTGCCTGTGCATCAG|ATTATAGCAAGATGTGTGCTCCCATTTCATAAAACCTGGCAAGATTCTACAAAATAAAGTTAAGTAACCCAACTTCATCCAGACTACAAGAATAAGCTTTTC PGLHHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQ|iiarcvlpfhktwqdstk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13606 LINC01208::ENSG00000266573 ENSG00000223715.3::ENSG00000266573.6 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176853709:- chr3:176133227-176585626:- chr3:176571497:- ENSG00000266573 ENSG00000266573.6 lncRNA + + chr18:24725762-24986980:+ chr18:24935982:+ chr18:22305726-22566944:+ chr18:22515946:+ chr3:176724856,chr3:176724860 chr18:24886372,chr18:24886368 NA NA chr3:176442644,chr3:176442648 chr18:22466336,chr18:22466332 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 2 1 0 132 9 ENST00000428516.1 ENST00000654065.1 upstream upstream none GTTCAGAGGAGACTGACTAAAGTTTGGTTGACGACGGAGTCCTTGTCACAGCAAAGAATCATCCTGCCCTTGTCTATTCTTGGGTAAAACCCACCCCAGCC...AGTTTTGGTGCTGTGTTTCgGGCAGGAGCAGAATCCTCACCTTTGGAACCCTGTTCACTCCACCCAG___AACAAGAAACAGATCGAGGAAGAGGCAGAGTAACAACAGCCGGGAAGAAGATACAGTTTT|GGGACCTCTGAGGGTCTATTTGAGGGCATGAATATGGAAAATTCAGCTCCAGCTCCTCCACCCCACTCCCTGAACAGCACTGCAGAACTGTGCTAAGCTCCTGTGGCTTGGAAAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13608 APTX::ENSG00000285637 ENSG00000137074.20::ENSG00000285637.2 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2397 FALSE NA APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:32985971:- chr9:32886599-33025128:- chr9:32985969:- ENSG00000285637 ENSG00000285637.2 lncRNA - - chr9:12958503-13034326:- chr9:13029577:- chr9:12958502-13034325:- chr9:13029576:- chr9:32971682,chr9:32971685 chr9:13034133,chr9:13034133 NA NA chr9:32971680,chr9:32971683 chr9:13034132,chr9:13034132 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none FHA_domain(100%),Scavenger_mRNA_decapping_enzyme_C-term_binding(14%)| DcpS_C(12%),FHA(100%),FHA_2(100%),HIT(12%)| 1 0 0 936 11 ENST00000436040.7 ENST00000649120.1 upstream downstream none GGAAGCTGAGGCTGGGACAGGGCTGGAACCTGGGAGCAACTCTGGCCAATGCTCTGTGCCCCTAAAGAAGGGAAAAGATGCACCTATCAAAAAG___GAATCCCTGGGCCACTGGAGTCAAGGCTTGAAGATTTCTATGCAGGACCCCAAAATGCAG|GAATAGATGTACCCACCAAAAGCCTTGCTTGCAGCCACCTCCAC EAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGHWSQGLKISMQDPKMQ|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13609 SMU1::APTX ENSG00000122692.9::ENSG00000137074.20 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2398 TRUE 928 SMU1 ENSG00000122692.9 protein_coding - - chr9:33041765-33076674:- chr9:33060465:- chr9:33041763-33076672:- chr9:33060463:- APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:32974561:- chr9:32886599-33025128:- chr9:32974559:- chr9:33058304,chr9:33058316 chr9:32976889,chr9:32976898 NA NA chr9:33058302,chr9:33058314 chr9:32976887,chr9:32976896 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none LisH-like_dimerisation_domain(100%),WD_domain__G-beta_repeat(20%)|C2HE_/_C2H2_/_C2HC_zinc-binding_finger(100%),Scavenger_mRNA_decapping_enzyme_C-term_binding(18%) LisH_TPL(100%),WD40(21%)|DcpS_C(0%),HIT(0%),zf-C2H2_6(100%),zf-C2HE(100%) 8 10 4 1151 653 ENST00000397149.4 ENST00000672244.1 upstream downstream duplicates(1),low_entropy(3),mismatches(1) CAAAGATGTGGAAGAAGAAAAGTTTCCTACACAACTGAGCAGGCATATTAAG___...CAGATGGTCAGTATTTGGTCACTGGGTCTGTTGATGGATTCATTGAAGTATGGAACTTTACTACTGGAAAAATCAGAAAG|CCATGTACATCTTCATGTGATCAGCCAGGATTTTGATTCTCCTTGCCTTAAAAACAAAAAACATTGGAATTCTTTCAATACAGAATACTTCCTAGAATCACAAG___CTGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTTCGTTGTCATGAGTGCCAGC DGQYLVTGSVDGFIEVWNFTTGKIRK|PCTSSCDQPGF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13610 SMU1::APTX ENSG00000122692.9::ENSG00000137074.20 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2398 TRUE 928 SMU1 ENSG00000122692.9 protein_coding - - chr9:33041765-33076674:- chr9:33060465:- chr9:33041763-33076672:- chr9:33060463:- APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:32973652:- chr9:32886599-33025128:- chr9:32973650:- chr9:33058304,chr9:33058316 chr9:32976889,chr9:32976898 NA NA chr9:33058302,chr9:33058314 chr9:32976887,chr9:32976896 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none LisH-like_dimerisation_domain(100%),WD_domain__G-beta_repeat(20%)|C2HE_/_C2H2_/_C2HC_zinc-binding_finger(84%) LisH_TPL(100%),WD40(21%)|zf-C2H2_6(100%),zf-C2HE(15%) 0 1 0 1151 579 ENST00000397149.4 ENST00000436040.7 upstream downstream none ATTGAAGTATGGAACTTTACTACTGGAAAAATCAGAAAG|CTGTGATCGAGATGGTACAAGAGGCTGGTAGAGTAACTGTCCGAGATGGGATGCCTGAGCTCTTGAAGCTGCCCCTTCGTTGTCATGAGTGCCAGCAGCTGCTGC IEVWNFTTGKIRK|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13634 SIPA1L3::BANF2 ENSG00000105738.11::ENSG00000125888.15 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:38029156:+ chr19:38397848-38699009:+ chr19:38519796:+ BANF2 ENSG00000125888.15 protein_coding + - chr20:17693672-17735871:+ chr20:17723051:- chr20:17674317-17716516:+ chr20:17703696:- chr19:38054280,chr19:38054278,chr19:38054196 chr20:17723583,chr20:17723585,chr20:17723885 NA NA chr19:38544920,chr19:38544918,chr19:38544836 chr20:17704228,chr20:17704230,chr20:17704530 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' medium none none none 2 0 0 112 1 ENST00000476317.2 unknown downstream downstream mismappers(1) CCGCATTCCAGGCACCCACAGCGGGCTGGGGGCGGGCACCACTGAGGTCGGCCTGGAGAGCCAAGGCAGGTGGCCTCGCCCTGGGAGGACCAGGGACAGGA...CCCACTTTGTGATCAGAGCCGTGTTCGGGGAGTCTTTCAG___ATGCACAGTCTCTGACATCAGCTCTCCTGGGACCCTCCAAGAGCACTAGTGTCTAGAAGGCACTAAGG|ATCATGAAGCCCCGAAGGGCTGCAGCTGCCTCCTAATGGCCTTTGCTCCCCAATCCAACACCAGCCCCTCTGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13655 LINC01208::NAALADL2 ENSG00000223715.3::ENSG00000177694.16 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2404 FALSE NA LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176853709:- chr3:176133227-176585626:- chr3:176571497:- NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:175096790:+ chr3:174156363-175528336:+ chr3:174814580:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Peptidase_family_M28(100%) |Peptidase_M28(100%) 1 0 0 132 540 ENST00000428516.1 ENST00000454872.6 upstream upstream none TGCCAGGCCTGGGACTCACCCTTCAG___AACAAGAAACAGATCGAGGAAGAGGCAGAGTAACAACAGCCGGGAAGAAGATACAGTTTT|GTAAAAAGATGGCCTATCAGAAGGTCCATGCAGATCAAAGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4789 chr3:175369540-175369621:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13666 CAPZB::B3GALT1 ENSG00000077549.19::ENSG00000172318.6 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19378540:- chr1:19665269-19812033:- chr1:19705034:- B3GALT1 ENSG00000172318.6 protein_coding + - chr2:167293001-167874045:+ chr2:167707038:- chr2:168149511-168730555:+ chr2:168563548:- chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673,chr1:19357673 chr2:167747605,chr2:167747612,chr2:167747616,chr2:167747617,chr2:167747634,chr2:167747641,chr2:167747621,chr2:167747644,chr2:167747646,chr2:167747660,chr2:167747661,chr2:167747662,chr2:167747664,chr2:167747668 NA NA chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167,chr1:19684167 chr2:168604115,chr2:168604122,chr2:168604126,chr2:168604127,chr2:168604144,chr2:168604151,chr2:168604131,chr2:168604154,chr2:168604156,chr2:168604170,chr2:168604171,chr2:168604172,chr2:168604174,chr2:168604178 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none F-actin_capping_protein__beta_subunit(44%)| F_actin_cap_B(51%)| 90 118 89 2755 258 ENST00000264202.8 unknown upstream downstream duplicates(72),inconsistently_clipped(1),low_entropy(1),mismatches(7),multimappers(1) CAGCCACTGAAAATTGCCAGAGACAAGGTGGTGGGAAAGGATTACCTTTTGTGTGACTACAACAGAGATGGGGACTCCTATAG___GTCACCATGGAGTAACAAGTATGACCCTCCCTTGGAGGATGGGGCCATGCCGTCAGCTCGGCTGAGAAAGCTGGAGGTGGAAGCCAACAATGCCTTTGACCAGTATCGAGACCT|GCTGTTTGGACTTCCTCACAGCATGATGCAAGATGATTGCAAAATCAAGCATTCCAAGAGAGCAAAGGAGAGGATTTAGGCCAAAATGCGACATTGTTATTACCTAGCTTGGGAAGTAATATACTTTCACTTCTGTCAGATTCTATTGGTCTGCTCAGGTTCAAGAGGATTGGACAGAGATTTATCCCTTGGTAAGGAATGGCAAGTTTTTAGTAAAGCATGTGAGATGGCAGACAGTTGTGAAGCCACCTTTGGAAGTTACAATCTGCAATACTCACTTATGTGAAACC QPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDl|lfglphsmmqddckikhskrakeri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13667 TWSG1::PIK3C3 ENSG00000128791.12::ENSG00000078142.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1347 TRUE 2406 TRUE 929 TWSG1 ENSG00000128791.12 protein_coding + + chr18:9334767-9402420:+ chr18:9360071:+ chr18:9334765-9402418:+ chr18:9360069:+ PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:42081123:+ chr18:39535199-39667794:+ chr18:39661087:+ chr18:9387952,chr18:9387952 chr18:42080539,chr18:42080537 NA NA chr18:9387950,chr18:9387950 chr18:39660503,chr18:39660501 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 113 70 64 725 310 ENST00000262120.10 ENST00000262039.9 downstream upstream duplicates(92),inconsistently_clipped(2),low_entropy(16),mismatches(8) GGCCGACCCGGCGGGGATCTAGGGGTGGGCGACTTCGCGGGACCGTGGCGCATG___TTTCCTGGGAGTTACTGATCATCTTCTTTGAAGAAACATGAAGTTACACTATGTTGCTGTGCTTACTCTAGCCATCCTGATGTTCCTGACATGGCTTCCAGAATCACTGAGCTGTAACAAAGCACTCTGTGCTAGTGATGTGAGCAAATGCCTCATTCAG___GAGCTCTGCCAGTGCCGGCCGGGAGAAGGCAATTGCTCCTGCTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGGGACGAGTGCTGTGACTGTGTTG|TACTGGAGAAAATGAAACTGGGATTGACCCATCAAGATGCTTGGCTCAATAAGAAAACCACGTTAGGAGCAACCTTTGTATATTGGAGACTTCAGAGTAACCAGCAAGGAAGAGAAATCTTAATCTTCAAGTTACCATATTTTCCAAATATTACATGGTACCTGAGTTCTGCTTCCTTGGATGTCATTGCTTAAATATAGTCTTGAAG MKLHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLCLGALWDECCDCV|vlekmklglthqdawlnkkttlgatfvywrlqsnqqgreilifklpyfpnitwylssasldvia* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13668 TWSG1::PIK3C3 ENSG00000128791.12::ENSG00000078142.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2406 TRUE 929 TWSG1 ENSG00000128791.12 protein_coding + + chr18:9334767-9402420:+ chr18:9337352:+ chr18:9334765-9402418:+ chr18:9337350:+ PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:42081123:+ chr18:39535199-39667794:+ chr18:39661087:+ chr18:9387952,chr18:9387952 chr18:42080539,chr18:42080537 NA NA chr18:9387950,chr18:9387950 chr18:39660503,chr18:39660501 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none none none 1 1 30 692 310 ENST00000262120.10 ENST00000262039.9 downstream upstream duplicates(6) AGCGCGCCCCGGGCTCGGCCGACCCGGCGGGGATCTAGGGGTGGGCGACTTCGCGGGACCGTGGCGCATG___TTTCCTGGGAGTTACTGATCATCTTCTTTGAAGAAACATGAAGTTACACTATGTTGCTGTGCTTACTCTAGCCATCCTGATGTTCCTGACATGGCTTCCAGAATCACTGAGCTGTAACAAAGCACTCTGTGCTAGTGATGTGAGCAAATGCCTCATTCAG|TACTGGAGAAAATGAAACTGGGATTGACCCATCAAGATGCTTGGCTCAATAAGAAAACCACGTTAGGAGCAACCTTTGTATATTGGAGACTTCAGAGTAACCAGCAAGGAAGAGAAATCTTAATCTTCAAGTTACCATATTTTCCAAATATTACATGGTACCTGAGTTCTGCTTCCTTGGATGTCATTGCTTAAATATAGTCTTGAAGGGCTTGTTTTGAAATATTGTATATATTTTTTCAAATGTATACATTGTTAATAAATTAAGAAATGAG MKLHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQ|YWRK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13669 PPP4R3A::HEATR3 ENSG00000100796.18::ENSG00000155393.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1348 TRUE 2407 TRUE 930 PPP4R3A ENSG00000100796.18 protein_coding - - chr14:91457508-91510554:- chr14:91509506:- chr14:91923852-91976898:- chr14:91975850:- HEATR3 ENSG00000155393.14 protein_coding + + chr16:50065967-50107272:+ chr16:50094705:+ chr16:50099878-50141183:+ chr16:50128616:+ chr14:91499583,chr14:91499840,chr14:91499842 chr16:50092700,chr16:50092629,chr16:50092627 NA NA chr14:91965927,chr14:91966184,chr14:91966186 chr16:50126611,chr16:50126540,chr16:50126538 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none WH1(0%)| 31 131 43 499 434 ENST00000554943.6 ENST00000299192.8 upstream upstream duplicates(49),mismatches(12) GGCCCCTTTCCTGGGCGTCTACTGGCGGGGCCCCCGCCCCGGTTCCCGGGCGGCACGATGACCGACACCCGGCGGCGGGTGAAGGTGTACACGCTCAACGAGGACCGGCAGTGGGACGACCGGGGCACCGGGCATGTGTCGTCTGGCTACGTGGAGCGGCTGAAGGGCATGTCCCTGCTTGTCAGGGCTGAGAGCGACG|ATTTTGCTAAACATGTTGACTTTCTAGAAGCCATAAGTAGTGCTTTGAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTTCCCAG___TGCATGACTCCTGATCAGCTGATGACATTATGCAAAGCAGGCATTCATAGTAGTAATGTCGGGGTTAGAGTGAATGTCGTTAGCATTTTAGGAATCACTGGCAGCGTCCTTGCCAAAGAAGATGGTACACTTGAAACTCTTAAG___AACATTGGGTGCTTTCTGCTTGAAGTTACCACCAAAGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCC MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESD|dFAKHVDFLEAISSALRALLQTMASKNISQCMTPDQLMTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKDPSLVVAGEALD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13670 PPP4R3A::HEATR3 ENSG00000100796.18::ENSG00000155393.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2407 TRUE 930 PPP4R3A ENSG00000100796.18 protein_coding - - chr14:91457508-91510554:- chr14:91509506:- chr14:91923852-91976898:- chr14:91975850:- HEATR3 ENSG00000155393.14 protein_coding + + chr16:50065967-50107272:+ chr16:50100230:+ chr16:50099878-50141183:+ chr16:50134141:+ chr14:91499583,chr14:91499840,chr14:91499842 chr16:50092700,chr16:50092629,chr16:50092627 NA NA chr14:91965927,chr14:91966184,chr14:91966186 chr16:50126611,chr16:50126540,chr16:50126538 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none WH1(0%)| 2 0 22 499 451 ENST00000554943.6 ENST00000299192.8 upstream upstream duplicates(4),mismatches(4) CGCCCTCACGCCTCGCCCCTCGCCTCTCCAGGGCCCCTTTCCTGGGCGTCTACTGGCGGGGCCCCCGCCCCGGTTCCCGGGCGGCACGATGACCGACACCCGGCGGCGGGTGAAGGTGTACACGCTCAACGAGGACCGGCAGTGGGACGACCGGGGCACCGGGCATGTGTCGTCTGGCTACGTGGAGCGGCTGAAGGGCATGTCCCTGCTTGTCAGGGCTGAGAGCGACG|TGCATGACTCCTGATCAGCTGATGACATTATGCAAAGCAGGCATTCATAGTAGTAATGTCGGGGTTAGAGTGAATGTCGTTAGCATTTTAGGAATCACTGGCAGCGTCCTTGCCAAAGAAGATGGTACACTTGAAACTCTTAAG___AACATTGGGTGCTTTCTGCTTGAAGTTACCACCAAAGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCC MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESD|vhds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13671 PPP4R3A::HEATR3 ENSG00000100796.18::ENSG00000155393.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2407 TRUE 930 PPP4R3A ENSG00000100796.18 protein_coding - - chr14:91457508-91510554:- chr14:91510075:- chr14:91923852-91976898:- chr14:91976419:- HEATR3 ENSG00000155393.14 protein_coding + + chr16:50065967-50107272:+ chr16:50102353:+ chr16:50099878-50141183:+ chr16:50136264:+ chr14:91499583,chr14:91499840,chr14:91499842 chr16:50092700,chr16:50092629,chr16:50092627 NA NA chr14:91965927,chr14:91966184,chr14:91966186 chr16:50126611,chr16:50126540,chr16:50126538 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none none none 0 1 1 890 532 ENST00000554943.6 ENST00000689598.1 upstream upstream duplicates(1) ACGGCGGCGGAGGGAAACCGACTTCCACTAGTCCGGGTCGCTTGGGCGGCCGGGGGCCCTCAGAGTCTCCCGGGCAGTGGTAGCcGTTGCAGCAGGATCAG...CACTGGCCGCGGTGGCAGGGCCAG|ATGGTAAAGAAGCCGAAAGAGCCTCGATTCAAATTAAATTATTATCTGCTCTGAAAGAATTCCAGCCGGTCTTTAAAATGAAG___ATACGTAAAGAAGGGAGAGGTAACTATAGCACAGATCAGCTGTGTGTTCTTGACAATGTGAAAATGAATTTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13672 PTK2::PKHD1L1 ENSG00000169398.20::ENSG00000205038.12 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1349 FALSE NA FALSE NA PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140700891:- chr8:141667999-142012315:- chr8:141710990:- PKHD1L1 ENSG00000205038.12 protein_coding + + chr8:109362461-109537207:+ chr8:109518167:+ chr8:110374690-110549436:+ chr8:110530396:+ chr8:140695968,chr8:140695985 chr8:109517152,chr8:109517135 NA NA chr8:141706067,chr8:141706084 chr8:110529381,chr8:110529364 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none FERM_N-terminal_domain(100%),FERM_central_domain(100%),Protein_kinase_domain(100%)| FERM_M(100%),FERM_N_2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 33 33 54 549 111 ENST00000696786.1 ENST00000378402.10 upstream upstream duplicates(30),mismatches(6) GAATCATAGACCTCAGGAGATAGCAATGTGGCAGCCCAATGTGGAG___GACTCTACAGTATTGGACCTGCGAGGGATTGGGCAAGTGTTGCCAACCCATCTGATGGAAGAGCGTCTAATCCGACAGCAACAGGAAATGGAAGAAGATCAGCGCTGGCTGGAAAAAGAGGAAAGATTTCTG|ACCAATTCCTTCCTAACCTGGATTCCACTGTCCTTGGTGAAAACTACTTTGATGGAACCTACCAGATGCTTTATCTTTTGGTTAAAGGAACTATACCTGTTGAAATTCACACTGCCACAGTGATATTTGTTTCTTTCCAATTATCTGTTGCAACAGAAGATGACTTTTATACCTCTCACAATCTGGTTAAAAATCTTGCCTTGTTCCTAAAGATACCAAGTGACAAAATCCGTATCAGCAAAATAAGAGGGAAGAGTCTGAGGAGGAAGAGATC NHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFL|tnsfltwiplslvkttlmeptrcfifwlkelyllkftlpq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13673 RAP2A::PCDH9-AS1 ENSG00000125249.7::ENSG00000234527.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAP2A ENSG00000125249.7 protein_coding + + chr13:97434169-97469128:+ chr13:97434784:+ chr13:98086423-98121382:+ chr13:98087038:+ PCDH9-AS1 ENSG00000234527.1 lncRNA + + chr13:66303871-66323561:+ chr13:66323174:+ chr13:66878003-66897693:+ chr13:66897306:+ chr13:97439058 chr13:66303954 NA NA chr13:98091312 chr13:66878086 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Ras_family(62%)| Arf(1%),Ras(1%),Roc(1%)| 27 28 59 380 128 ENST00000245304.5 ENST00000430861.1 downstream upstream duplicates(28),low_entropy(6),mismatches(14) CGGGCGGGGTAGGCAAATCCGCCCTGACCGTGCAGTTCGTGACCGGCACCTTCATCGAGAAATACGACCCCACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGATTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACCGAGCAGTTCGCGTCCATGCGGGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTCGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCGGGACCAGATCATCCGCGTGAAGCG|GTTTGATGACTGGCTTACAGAGAAGAATAAGGAAATGTACCTCTAAGAATCGTTTGAAATGAGTCTTCATATCCTCCCAAATATTTTTCAAGAACGTTTGGCATTACTTCAAAAATTAACTTTAGGAAAGGAACTATTATCACATTTTAAGAGGGGAATTGCAGTTGCACTTAAACTAGAAACTTCCACTTGGTGAATTGAATTATTAAGGAATAATGGCAGAAGAAAGAGTAAGTCGTTTATAGGCAATAATAAGCAATAAAAATATATGTATATGTGCA GGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKr|fddwlteknkemyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13674 JADE2::UBE2B ENSG00000043143.22::ENSG00000119048.9 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1350 TRUE 2408 TRUE 931 JADE2 ENSG00000043143.22 protein_coding + + chr5:134524312-134583230:+ chr5:134538083:+ chr5:133860003-133918920:+ chr5:133873773:+ UBE2B ENSG00000119048.9 protein_coding + + chr5:134371184-134392108:+ chr5:134374383:+ chr5:133706875-133727799:+ chr5:133710074:+ chr5:134543167,chr5:134543166 chr5:134373247,chr5:134373243 NA NA chr5:133878857,chr5:133878856 chr5:133708938,chr5:133708934 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Enhancer_of_polycomb-like(24%)|Ubiquitin-conjugating_enzyme(94%) EPL1(8%)|UQ_con(85%) 25 24 40 141 1063 ENST00000431355.2 ENST00000265339.7 downstream upstream duplicates(23),mismatches(4) AGCGcACTGTTTGTGCACCACAAG___...GAGCAAG___ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACA___GTCATGCGACATCTACATCCGCATCAAGATGCTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGACAGAACGAAAAGAAGCCCTCCGAG|GTTACAAGAGGACCCACCTGTGGGTGTCAGTGGCGCACCATCTGAAAACAACATCATGCAGTGGAATGCAGTTATATTTGG___ACCAGAAGGGACACCTTTTGAAGATG___GTACTTTTAAACTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCACCAACTGTTAGGTTTTTATCCAAAATGTTTC MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSE|vtrgptcgcqwrti* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Liver,Adrenal exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13675 JADE2::UBE2B ENSG00000043143.22::ENSG00000119048.9 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2408 TRUE 931 JADE2 ENSG00000043143.22 protein_coding + + chr5:134524312-134583230:+ chr5:134538083:+ chr5:133860003-133918920:+ chr5:133873773:+ UBE2B ENSG00000119048.9 protein_coding + + chr5:134371184-134392108:+ chr5:134388325:+ chr5:133706875-133727799:+ chr5:133724016:+ chr5:134543167,chr5:134543166 chr5:134373247,chr5:134373243 NA NA chr5:133878857,chr5:133878856 chr5:133708938,chr5:133708934 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Enhancer_of_polycomb-like(24%)|Ubiquitin-conjugating_enzyme(47%) EPL1(8%)|UQ_con(10%) 1 0 6 141 777 ENST00000681547.2 ENST00000265339.7 downstream upstream duplicates(1),mismatches(1) GCAAG___ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACA___GTCATGCGACATCTACATCCGCATCAAGATGCTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGACAGAACGAAAAGAAGCCCTCCGAG|TGTATGCTGATGGTAGCATATGTTTAGATATCCTTCAGAATCGATGGAGTCCAACATATGATGTATCTTCTATCTTAACATCAATTCAG___TCTCTGCTGGATGAACCGAATCCTAACAGTCCAGCCAATAGCCAGGCAGCACAGCTTTATCAGGAAAACAAAC MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSE|cmlmvayv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Liver,Adrenal exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13676 JADE2::UBE2B ENSG00000043143.22::ENSG00000119048.9 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2408 TRUE 931 JADE2 ENSG00000043143.22 protein_coding + + chr5:134524312-134583230:+ chr5:134538083:+ chr5:133860003-133918920:+ chr5:133873773:+ UBE2B ENSG00000119048.9 protein_coding + + chr5:134371184-134392108:+ chr5:134376669:+ chr5:133706875-133727799:+ chr5:133712360:+ chr5:134543167,chr5:134543166 chr5:134373247,chr5:134373243 NA NA chr5:133878857,chr5:133878856 chr5:133708938,chr5:133708934 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Enhancer_of_polycomb-like(24%)|Ubiquitin-conjugating_enzyme(75%) EPL1(8%)|UQ_con(72%) 1 0 22 141 843 ENST00000681547.2 ENST00000265339.7 downstream upstream duplicates(4),mismatches(2) CGCGGAGCAAG___ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACA___GTCATGCGACATCTACATCCGCATCAAGATGCTCCAAACTGCCCAGCAGCACCAAGTCGGGCTGGCCCCGACAGAACGAAAAGAAGCCCTCCGAG|ACCAGAAGGGACACCTTTTGAAGATG___GTACTTTTAAACTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCACCAACTGTTAGGTTTTTATCCAAAATGTTTCATCCAAAT MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSE|trrdtf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Liver,Adrenal exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13677 KIAA1958::HSDL2 ENSG00000165185.15::ENSG00000119471.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KIAA1958 ENSG00000165185.15 protein_coding + + chr9:112486827-112669397:+ chr9:112487118:+ chr9:115249107-115431677:+ chr9:115249398:+ HSDL2 ENSG00000119471.15 protein_coding + + chr9:112380080-112472405:+ chr9:112459449:+ chr9:115142360-115234685:+ chr9:115221729:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |SCP-2_sterol_transfer_family(77%) |SCP2(67%) 27 37 23 99 500 ENST00000337530.11 ENST00000398803.1 downstream upstream duplicates(14),mismatches(3) CCCGCTCCTCGGTCCGCCGCCCGCCGGGCGCCTTCCCCGCTCCACTTACCTTcGGTGCCCGGCCCTCTGGCCGCTCTCCTCCCGCCCTCGCGCCCCTTCGGCCCGTCCCGTCCAGCCCGGGCTGCCCGGCTCTCGCAGGCCCCCCCGCGCCGACCGCGTTCCTATGGACAGACGCACAGACACCTGCAG|GTGAAGATGGTGGCACGTGGTTTCTTGATCTGAAAAGCAAGGGTGGGAATGTCGGATATGGAGAGCCTTCTGATCAGGCAGATGTGGTGATGAGTATGACTACTGATGACTTTGTAAAAATGTTTTCAG___GGAAACTAAAACCAACAATGGCATTCATGTCAGGGAAATTGAAGATTAAAGGTAACATGGCCCTAGCAATCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13681 OXR1::DNAAF11 ENSG00000164830.19::ENSG00000129295.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106713985:+ chr8:107282372-107764922:+ chr8:107726213:+ DNAAF11 ENSG00000129295.10 protein_coding - + chr8:132570416-132675592:- chr8:132661729:+ chr8:133582664-133687838:- chr8:133673975:+ chr8:106747703,chr8:106747571,chr8:106747582,chr8:106747583 chr8:132661631,chr8:132661659,chr8:132661659,chr8:132661659 NA NA chr8:107759931,chr8:107759799,chr8:107759810,chr8:107759811 chr8:133673877,chr8:133673905,chr8:133673905,chr8:133673905 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none LysM_domain(100%)| LysM(100%)| 22 12 31 452 113 ENST00000517566.7 unknown downstream upstream duplicates(16),mismappers(1),mismatches(3) TGGAAAACCAATGAGGAAAACGTTTGTATCTCAAGCAAGTGCTACAATGCAACAGTATGCACAGAGAGATAAGAAACATGAATATTGGTTTGCTGTGCCACAAGAAAG___GACAGATCACTTGTATGCCTTCTTCATTCAGTGGAGTCCAGAAATATATGCAGAAGATACTGGCGAATATACCAGAGAACCTGGATTTATAGTAGTAAAAAAGATTGAGGAGTCTGAAACAATTGAGGATTCTAGTAATCAAGCAGCAGCCAGAGAATGGGAG|TTGAATGTCAATTTTCCAGGCCCAAGCGATTTTCAAAGTGAGAGAGAAAATGGTACCTCCTCCTGGAGTTTTTGTGATGCCATGATGTGAGCTGGAGAGAAGAAGAAGACATGATGATATTGTATTTGCCTTTGAATGTGAAGGGTCTACATACATTTTGCTGTAT GKPMRKTFVSQASATMQQYAQRDKKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDTGEYTREPGFIVVKKIEESETIEDSSNQAAAREWE|lnvnfpgpsdfqserengtsswsfcdamm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13682 PKHD1L1::ZFPM2 ENSG00000205038.12::ENSG00000169946.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PKHD1L1 ENSG00000205038.12 protein_coding + + chr8:109362461-109537207:+ chr8:109522890:+ chr8:110374690-110549436:+ chr8:110535119:+ ZFPM2 ENSG00000169946.14 protein_coding + - chr8:104590733-105804539:+ chr8:105629289:- chr8:105602961-106816767:+ chr8:106641517:- chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200 chr8:105632843,chr8:105632849,chr8:105632836,chr8:105632874,chr8:105632829,chr8:105632837,chr8:105632840 NA NA chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429 chr8:106645071,chr8:106645077,chr8:106645064,chr8:106645102,chr8:106645057,chr8:106645065,chr8:106645068 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none G8_domain(100%),IPT/TIG_domain(100%),PA14_domain(100%)| Beta_helix(100%),G8(100%),PA14(100%),TIG(100%)| 21 25 18 134 86 ENST00000378402.10 unknown downstream downstream duplicates(12),mismatches(6) GTCAGATGCAGTTATCTGAACTCCAGGAAATTGCTGGTTCTCTTGGACAAGCTGTAATTTTAGGAAACATCAGTAGTATCCTTGGATTTAACATTTCGTCCATGTCTATTACTAATCCCCTCCCCAGCCCAAGTGACTCTGGGTGGATTAAG___GTGACTGCCCAGCCAGTTGAAAGGTCTGCATTTCCTGTTCATCACGTGGCCTTCGTGTCCTCACTCTTAGTGATCACTCAGCCGGTGGCAGCACAGCCAGGACAGCCATTTCCTCAGCAGCCTTCGGTAAAGGCAACAGATTCTGAC|GACTCGCAACAGGGGTGCCCCATTTATTCAGCCTGCTGCTCTCATCTCCTCGCGGGAGGGAGCACATGAGCGAACAAGTATGGGAACTGGAGTGAACAAGCACTGGAACCAGTCAGCCGCTTCAGTGCCAGTGGGACCAAACTCCATTCACTTGGACCTGCTG QMQLSELQEIAGSLGQAVILGNISSILGFNISSMSITNPLPSPSDSGWIKVTAQPVERSAFPVHHVAFVSSLLVITQPVAAQPGQPFPQQPSVKATDSD|dsqqgcpiysaccshllaggst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13683 PKHD1L1::ZFPM2-AS1 ENSG00000205038.12::ENSG00000251003.9 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PKHD1L1 ENSG00000205038.12 protein_coding + + chr8:109362461-109537207:+ chr8:109522890:+ chr8:110374690-110549436:+ chr8:110535119:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105629289:- chr8:106558317-107072752:- chr8:106641517:- chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200,chr8:109523200 chr8:105632843,chr8:105632849,chr8:105632836,chr8:105632874,chr8:105632829,chr8:105632837,chr8:105632840 NA NA chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429,chr8:110535429 chr8:106645071,chr8:106645077,chr8:106645064,chr8:106645102,chr8:106645057,chr8:106645065,chr8:106645068 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none G8_domain(100%),IPT/TIG_domain(100%),PA14_domain(100%)| Beta_helix(100%),G8(100%),PA14(100%),TIG(100%)| 21 25 18 134 86 ENST00000378402.10 unknown downstream downstream duplicates(12),mismatches(6) GTCAGATGCAGTTATCTGAACTCCAGGAAATTGCTGGTTCTCTTGGACAAGCTGTAATTTTAGGAAACATCAGTAGTATCCTTGGATTTAACATTTCGTCCATGTCTATTACTAATCCCCTCCCCAGCCCAAGTGACTCTGGGTGGATTAAG___GTGACTGCCCAGCCAGTTGAAAGGTCTGCATTTCCTGTTCATCACGTGGCCTTCGTGTCCTCACTCTTAGTGATCACTCAGCCGGTGGCAGCACAGCCAGGACAGCCATTTCCTCAGCAGCCTTCGGTAAAGGCAACAGATTCTGAC|GACTCGCAACAGGGGTGCCCCATTTATTCAGCCTGCTGCTCTCATCTCCTCGCGGGAGGGAGCACATGAGCGAACAAGTATGGGAACTGGAGTGAACAAGCACTGGAACCAGTCAGCCGCTTCAGTGCCAGTGGGACCAAACTCCATTCACTTGGACCTGCTG QMQLSELQEIAGSLGQAVILGNISSILGFNISSMSITNPLPSPSDSGWIKVTAQPVERSAFPVHHVAFVSSLLVITQPVAAQPGQPFPQQPSVKATDSD|dsqqgcpiysaccshllaggst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13684 ZFPM2::ESRP1 ENSG00000169946.14::ENSG00000104413.18 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFPM2 ENSG00000169946.14 protein_coding + - chr8:104590733-105804539:+ chr8:105629100:- chr8:105602961-106816767:+ chr8:106641328:- ESRP1 ENSG00000104413.18 protein_coding + + chr8:94641074-94707466:+ chr8:94667949:+ chr8:95653302-95719694:+ chr8:95680177:+ chr8:105627877,chr8:105627899,chr8:105627867,chr8:105627895,chr8:105627858,chr8:105627857,chr8:105627849,chr8:105627845,chr8:105627843,chr8:105627844,chr8:105627887,chr8:105627863,chr8:105627837,chr8:105627833,chr8:105627900,chr8:105627896,chr8:105627893,chr8:105627892,chr8:105627891,chr8:105627890,chr8:105627878 chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228 NA NA chr8:106640105,chr8:106640127,chr8:106640095,chr8:106640123,chr8:106640086,chr8:106640085,chr8:106640077,chr8:106640073,chr8:106640071,chr8:106640072,chr8:106640115,chr8:106640091,chr8:106640065,chr8:106640061,chr8:106640128,chr8:106640124,chr8:106640121,chr8:106640120,chr8:106640119,chr8:106640118,chr8:106640106 chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none none none 15 20 28 66 758 unknown ENST00000423620.6 upstream upstream duplicates(21),mismatches(4) tgAcGACTCGCAACAGGGGTGCCCCATTTATTCAGCCTGCTGCTCTCATCTCCTCGCGGGAGGGAGCACATGAGCGAACAAGTATGGGAACTGGAGTGAACAAGCACTGGAACCAGTCAGCCGCTTCAGTGCCAGTGGGACCAAACTCCATTCACTTGGACCTGCTGTTTTCCACCTCTTGCAGGAGTGCACAG|GTACTTCCAATGAGGTAGCCCAGTTTCTCTCCAAGGAAAATCAAGTCATTGTCCGCATGCGGGGGCTCCCTTTCACGGCCACAGCTGAAGAAGTGGTGGCCTTCTTTGGACAGCATTGCCCTATTACTGGGGGAAAGGAAGGCATCCTCTTTGTCACCTACCCAGATGGTAGGCCAACAGGGGACGCTTTTGTCCTCTTTGCCTGTGAGGAATATGCACAGAATGCGTTGAGGAAGCATAAAGACTTGTTGGGTAAAAGATACATTGAACTCTTCAGGAGCACAGCAGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13685 ZFPM2-AS1::ESRP1 ENSG00000251003.9::ENSG00000104413.18 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105629100:- chr8:106558317-107072752:- chr8:106641328:- ESRP1 ENSG00000104413.18 protein_coding + + chr8:94641074-94707466:+ chr8:94667949:+ chr8:95653302-95719694:+ chr8:95680177:+ chr8:105627877,chr8:105627899,chr8:105627867,chr8:105627895,chr8:105627858,chr8:105627857,chr8:105627849,chr8:105627845,chr8:105627843,chr8:105627844,chr8:105627887,chr8:105627863,chr8:105627837,chr8:105627833,chr8:105627900,chr8:105627896,chr8:105627893,chr8:105627892,chr8:105627891,chr8:105627890,chr8:105627878 chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228,chr8:94666228 NA NA chr8:106640105,chr8:106640127,chr8:106640095,chr8:106640123,chr8:106640086,chr8:106640085,chr8:106640077,chr8:106640073,chr8:106640071,chr8:106640072,chr8:106640115,chr8:106640091,chr8:106640065,chr8:106640061,chr8:106640128,chr8:106640124,chr8:106640121,chr8:106640120,chr8:106640119,chr8:106640118,chr8:106640106 chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456,chr8:95678456 NA NA sense sense unknown intron CDS/splice-site inversion high none none none 15 20 28 66 758 unknown ENST00000423620.6 upstream upstream duplicates(21),mismatches(4) tgAcGACTCGCAACAGGGGTGCCCCATTTATTCAGCCTGCTGCTCTCATCTCCTCGCGGGAGGGAGCACATGAGCGAACAAGTATGGGAACTGGAGTGAACAAGCACTGGAACCAGTCAGCCGCTTCAGTGCCAGTGGGACCAAACTCCATTCACTTGGACCTGCTGTTTTCCACCTCTTGCAGGAGTGCACAG|GTACTTCCAATGAGGTAGCCCAGTTTCTCTCCAAGGAAAATCAAGTCATTGTCCGCATGCGGGGGCTCCCTTTCACGGCCACAGCTGAAGAAGTGGTGGCCTTCTTTGGACAGCATTGCCCTATTACTGGGGGAAAGGAAGGCATCCTCTTTGTCACCTACCCAGATGGTAGGCCAACAGGGGACGCTTTTGTCCTCTTTGCCTGTGAGGAATATGCACAGAATGCGTTGAGGAAGCATAAAGACTTGTTGGGTAAAAGATACATTGAACTCTTCAGGAGCACAGCAGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13690 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36477878:- chr14:36942493-36983034:- chr14:36947083:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 4 10 36 421 602 ENST00000358716.8 ENST00000519052.5 upstream downstream duplicates(6),mismatches(1) GGAAAACAAGGAAAATGGGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|ATGGAGGAGGGGAGGAGACGAGTGGGGACCAGCTTGACATCCAGTCTTCACCTGGACATATGGAAAGAACAAATGTGCGATCTGCTCGTTCCCTCTGAAGGTCTCTGTTACGTATTTCCTCCTCTCCTCCAGAGCATAATAACCAATGACTGCTCTCAGAAAGGTACTGTGACCACCACTTGCTTGGCTCTCCAACTTCCTCCCCCATTTCCCTCTTGACTCCTGTTTGCCATAACACCTTCTGTCCCCTAGCCTTGCCTCAGG ENKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|dgggeetsgdqldiqsspghmertnvrsarsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13691 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36477103:- chr14:36942493-36983034:- chr14:36946308:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 8 7 24 421 1367 ENST00000358716.8 ENST00000521114.5 upstream downstream duplicates(2) ATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|AACAGGCCTGAGGGAGAGGGAAAAGCGGATACCCACCTGTGTCGCTGTTTGCGTGCCAAGTCCAGGAACAGTCCATACAGCCCTGCTGCATCCCACGACGCTGTCACAAAGCAGGAGTTCATCCGAGGCCAAG___ATGGAGAAACTGAGGCCCAGAAATTGATGTCCAGAATGCTTTGCTCTTAGCCACTGTACTATTATGGCATATTTTATCTTTATGTATTGCATCA IKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|eqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13692 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36477098:- chr14:36942493-36983034:- chr14:36946303:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 4 1 24 421 1502 ENST00000358716.8 ENST00000518002.5 upstream downstream duplicates(1),mismatches(1) AAACAAGGAAAATGGGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|GCCTGAGGGAGAGGGAAAAGCGGATACCCACCTGTGTCGCTGTTTGCGTGCCAAGTCCAGGAACAGTCCATACAGCCCTGCTGCATCCCACGACGCTGTCACAAAGCAGGAGTTCATCCGAGGCCAAG___ATGGAGAAACTGAGGCCCAGAAATTGATGTCCAGAATGCTTTGCTCTTAGCCACTGTACTATTATGGCATATTTTAT...___ATGTTAATTATTCATACTGCATGACTGAGGATTTTG NKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|glrerekriptcvavcvpspgtvhtallhpttlsqsrssseakmeklrprn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13694 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36473881:- chr14:36942493-36983034:- chr14:36943086:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 1 4 6 421 1878 ENST00000358716.8 ENST00000677732.1 upstream downstream duplicates(2) CTGTTAAGTGAGGAAAACAAGGAAAATGGGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|ATGTTAATTATTCATACTGCATGACTGAGGATTTTGGAGGCAGAGAGAGATTCATCTGCAATATTTGGAACACCAATGGAGGTCTACGTCAACACAGAATTTATACAGCAGCTGGTGCTAGTCAGAGCTAATGACAGAATTTCAGTTTAATAAAAAGACCCCCAACTGAGCACACCATCTTGAAAAAAGTATACTTATCAAACAGCTTTCAATCAGTTCAAGAGAGACACCTTAATTGGGGAGAGGAAGAATTGCAGAGTAGTTTGTAA LLSEENKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|dvnysycmtedfggrerficniwntngglrqhriytaagasqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13695 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36474873:- chr14:36942493-36983034:- chr14:36944078:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 1 0 8 421 1579 ENST00000358716.8 ENST00000521114.5 upstream downstream mismatches(1) GGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|ATGGAGAAACTGAGGCCCAGAAATTGATGTCCAGAATGCTTTGCTCTTAGCCACTGTACTATTATGGCATATTTTATCTTTATGTATTGCATCATTTCATGGATTCAAGTTTATCAATGTCCTTTGACAAGTTTAAAAATCTGTCTGCTAAAATCTATCaAATACATTAAGGAAAAGTCCCACTTGGCACATCTCCCACACCAG___ATGTTAATTATTCATACTGCATGACTGAGGATTTTGGAGGCAGAaAGAGATcCAcCTGCAAgATTTGGAcCgCCA IIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|dgeteaqklmsrmlcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13696 ZNF649::ZNF616 ENSG00000198093.11::ENSG00000204611.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2411 TRUE 933 ZNF649 ENSG00000198093.11 protein_coding - - chr19:51889235-51905040:- chr19:51904914:- chr19:52392488-52408293:- chr19:52408167:- ZNF616 ENSG00000204611.7 protein_coding - - chr19:52113091-52139938:- chr19:52124049:- chr19:52616344-52643191:- chr19:52627302:- chr19:51902828,chr19:51902832 chr19:52124732,chr19:52124733 NA NA chr19:52406081,chr19:52406085 chr19:52627985,chr19:52627986 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 4 40 5 174 126 ENST00000354957.8 ENST00000600228.6 upstream downstream duplicates(15),inconsistently_clipped(2) GCCCTCGTCCGCCGCCATAGGCCAGTGCCGGGGTTTAAGGGCCAGGAAAGGAAGCATTCAGGGAATTTAGGTGTAGCCAGAAGAAAATCAG|GGGCATTTGACATTCAAGGATGTAGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGAGCCTGTGCAGAAAGCTTTGTACAAGGATGTGATGTTGGAGAACTATAGGAACCTGGTCTTCCTAG___GTATCTCTCCTAAATGTGTGATCAAGGAATTACCACCAACAGAGAACAGTAATACAGGAGAAAGGTTCCAAACAGTGGCACTGGAAAGACATCAAAGCTATGATATTGAAAATTTATACTTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13697 ZNF649::ZNF616 ENSG00000198093.11::ENSG00000204611.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2411 TRUE 933 ZNF649 ENSG00000198093.11 protein_coding - - chr19:51889235-51905040:- chr19:51904133:- chr19:52392488-52408293:- chr19:52407386:- ZNF616 ENSG00000204611.7 protein_coding - - chr19:52113091-52139938:- chr19:52124049:- chr19:52616344-52643191:- chr19:52627302:- chr19:51902828,chr19:51902832 chr19:52124732,chr19:52124733 NA NA chr19:52406081,chr19:52406085 chr19:52627985,chr19:52627986 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 1 0 6 3 126 ENST00000595418.5 ENST00000600228.6 upstream downstream duplicates(1) CAGTGCCGGGGTTTAAGGGCCgGGAAAGGAAGCATTCAGGGAATTTAGGTGTAGCCAGAAGAAAATCAG___GAGTTTCCTTGAGCAATGAACGATTCGCGAATTGGGCAGCCCCCAGAATCACAGCAGATTAACAGAGACTCCAGGGGTGCCTCGTGGTCAGAACAAATTTATAGACAAAAAAG|GGGCATTTGACATTCAAGGATGT...TCAGGAGGAGTGGAAATGCCTGGAGCCTGTGCAGAAAGCTTTGTACAAGGATGTGATGTTGGAGAACTATAGGAACCTGGTCTTCCTAG___GTATCTCTCCTAAATGTGTGATCAAGGAATTACCACCAACAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13698 CAPZB::PAK1 ENSG00000077549.19::ENSG00000149269.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19356635:- chr1:19665269-19812033:- chr1:19683129:- PAK1 ENSG00000149269.10 protein_coding - + chr11:77322017-77474635:- chr11:77447552:+ chr11:77033062-77185680:- chr11:77158597:+ chr1:19353002,chr1:19353008 chr11:77446304,chr11:77446302 NA NA chr1:19679496,chr1:19679502 chr11:77157349,chr11:77157347 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none F-actin_capping_protein__beta_subunit(80%)| F_actin_cap_B(78%)| 3 12 33 3056 130 ENST00000264202.8 unknown upstream upstream duplicates(39),low_entropy(4),mismappers(127),mismatches(11),multimappers(1) CATCTGTCTACCTCTGGGATCTGGATCATGGCTTTGCTGGAGTGATCCTCATAAAGAAGGCTGGAGATGGATCAAAGAAGATCAAAGGCTGCTGGGATTCCATCCACGTGGTAGAAGTGCAG___GAGAAATCCAGCGGTCGCACCGCCCATTACAAGTTGACCTCCACGGTGATGCTGTGGCTGCAGACCAACAAATCTGGCTCTGGCACCATGAACCTCGGAGGCAGCCTTACCAGACAG|GGGAAGTCTCGCGCTCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGGTTTCATCATGTTGGCCGGACTGGTCTCAAACTCCTGATCTCAGGTGATCCGCCCACCTCAGCC SVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNLGGSLTRQ|gksraqagvqwhdlsslqppppgfkrfsclslpsswdyrrppprpanfcifsrdggfimlaglvsns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13700 CHD2::FAM174B ENSG00000173575.24::ENSG00000185442.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92929091:+ chr15:93429433-93571226:+ chr15:93472321:+ FAM174B ENSG00000185442.13 protein_coding - + chr15:92617448-92809884:- chr15:92783177:+ chr15:93160678-93353114:- chr15:93326407:+ chr15:92937526 chr15:92757073 NA NA chr15:93480756 chr15:93300303 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 9 7 27 390 109 ENST00000394196.9 unknown downstream upstream duplicates(8),mismatches(2) ACAAAAGCCAAGAGGAGGACAGTTCGCTACACAGCAATGCATCGAG___TCACTCAGCCTCTGAAGAAGCTTCGGGTTCAGACTCAGGCAGTCAGTCGGAAAGTGAG...CTGAGAGCGAATCAGCAGGTTCCAAATCCCAGCCAGTCCTCCCAGAAGCCAAAGAGAAGCCAGCCTCTAAGAAGGAACGGATAGCTGATGTGAAGAAG___ATGTGGGAAGAATATCCTGATGTTTATGGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATTAAGGAAGAG___GCAAGTAGCGGGTCTGAGAGTGGGAGCCCAAAAAGAAGAGGCCAGAGGCAGCTGAAAAAACA|TTTTTCAGAACTCCCACCAAATGGATCCGCTGGCACGTAGACCTCAGCTAAGGGGCAAACTGAGGACTGCACTTTGACTACCATTCTTTGTCCTGAAGTTCTTCCTGAGAGGCCTGGAGGAAGTCACACCCACAAGGCAGTGCTCACATCTTCTGCTGCTGACCCCAGCTTTTTAAAGAAAGCTTCTCCTCCTCAACCAACTACAAATCAGAAAATCTTTGAATCTACCTAGGACCTCTAAGCACCACCCTCTAACCCTG ESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKh|fselppngsagt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 13703 CAPZB::LINC02241 ENSG00000077549.19::ENSG00000251629.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2413 TRUE 934 CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19485436:- chr1:19665269-19812033:- chr1:19811930:- LINC02241 ENSG00000251629.7 lncRNA + + chr5:20611806-20937800:+ chr5:20895483:+ chr5:20611915-20937909:+ chr5:20895592:+ chr1:19479717,chr1:19479719 chr5:20893337,chr5:20893335 NA NA chr1:19806211,chr1:19806213 chr5:20893446,chr5:20893444 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 39 0 4125 474 ENST00000264202.8 ENST00000657383.1 upstream upstream duplicates(5),mismatches(5) AGCGCCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCGCCACCATG|TTCTCTTGCCTGCCACCATGTAAGATATGCTTTTACTCTTCCGCCTTCCACCGTGACTGTGAGGCCTCCCCAGCCATGTGAAACTGTG...___GTGGCTCACGCCTGTAATTACAGCACTTTGGGAGGCCAAGGCGAGGGGATCACGAGGTCAGCAGATCAAGATCATCCTGGCCAACATGGTGAAATCCTGTCTCTACTAAAATACAAAAAAATTAGACAGGAGTGGTGGCGGG M|fsclppckicfyssafhrdceaspam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13704 CAPZB::LINC02241 ENSG00000077549.19::ENSG00000251629.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2413 TRUE 934 CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19484190:- chr1:19665269-19812033:- chr1:19810684:- LINC02241 ENSG00000251629.7 lncRNA + + chr5:20611806-20937800:+ chr5:20895483:+ chr5:20611915-20937909:+ chr5:20895592:+ chr1:19479717,chr1:19479719 chr5:20893337,chr5:20893335 NA NA chr1:19806211,chr1:19806213 chr5:20893446,chr5:20893444 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 3 1 2 94 474 ENST00000433834.5 ENST00000657383.1 upstream upstream duplicates(3),mismatches(1),multimappers(1) CGGGCCCTTCTCGAGGCTGCCGCCGTGGGTGCTGTGCGTGCGAAGCATTCTGCAGGGCAGGCCGGGGTCCACGGCGCCCGGGCCTGAGTGGGAGCCGAGGGGCGAGGATGGGTGGCCCACAGGACAAGGATGAACGCACAATCGCCCTTGTGAGGCCGTGGCCTTGGGGGGCCACCAGGCCCTGGATCCAGCATAT...CACGATGCACCCAAGCAGGCGCAGCCTCCCCTTCCCTCTGAACTGTCAGCTTGCAAGGGTTGGAACTGCTGATTATGGAAGTCCCTCGGATCAG|TTCTCTTGCCTGCCACCATGTAAGATATGCTTTTACTCTTCCGCCTTCCACCGTGACTGTGAGGCCTCCCCAGCCATGTGAAACTGTGAGTCTATTAAACCTTCTTTTCTTTATAAATTACCCTGTCTTGGGTATGAC...___GaCT MHPSRRSLPFPLNCQLARVGTADYGSPSDQ|fsclppckicfyssafhrdceaspam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13705 ELOVL6::ENPEP ENSG00000170522.10::ENSG00000138792.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1352 TRUE 2414 TRUE 935 ELOVL6 ENSG00000170522.10 protein_coding - - chr4:110045846-110199199:- chr4:110198247:- chr4:110967002-111120355:- chr4:111119403:- ENPEP ENSG00000138792.10 protein_coding + + chr4:110365733-110565285:+ chr4:110476612:+ chr4:111286889-111486441:+ chr4:111397768:+ chr4:110150649 chr4:110442756 NA NA chr4:111071805 chr4:111363912 NA NA sense sense in-frame CDS/splice-site CDS inversion high none GNS1/SUR4_family(2%)|ERAP1-like_C-terminal_domain(100%),Peptidase_M1_N-terminal_domain(100%),Peptidase_family_M1_domain(100%) ELO(0%)|ERAP1_C(100%),Peptidase_M1(100%),Peptidase_M1_N(100%) 6 5 24 360 31 ENST00000302274.8 ENST00000265162.10 upstream upstream duplicates(4),low_entropy(1) GGAGCTGGGAGCGGAGGCGCAG___...GAACACTCGAAATCAAGCGCTTTACAGATTATTTTATTTTGTATAGAGAACACGTAGCGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTTTACAAGAATATGAATTCGAAAAGCAGTTCAACGAGAATGAAGCCATCCAATGGATGCAGGAAAACTG|CCCCTCAGGTCCTCCTGCCCAGGACCAGGACATCTGCCCGGCCAGTGAGGATGAGAGCGGACAGTGGAAAAACTTTCGACTGCCGGACTTCGTCAACCCAGTCCACTACGACCTGCACGTGAAGCCCCTGTTGGAGGAGGACACCTACACGGGCACCGTGAGCATCTCCATCAACCTGAGCGCTCCCACCCGGTACCTGTGGCTGCACCTCCGGGAGACCAGGATCcCCCGGCTCCCGGAGCTGAAGAGGCCCTCTGGGGACCAGGTGCAAGTCCGGA...TGGTCGAGGCGGAGGAAGAGCTTACCCCCAGCAGTGGAGATGGCCTGTATCTCCTGACCATGGAGTTCGCCGGCTGGCTGAACGGCTCCCTCGTGGGATTT MNMSVLTLQEYEFEKQFNENEAIQWMQENc|PSGPPAQDQDICPASEDESGQWKNFRLPDFVNPVHYDLHVKPLLEEDTYTGTVSISINLSAPTRYLWLHLRETRIpRLPELKRPSGDQVQVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13706 ELOVL6::ENPEP ENSG00000170522.10::ENSG00000138792.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1353 TRUE 2414 TRUE 935 ELOVL6 ENSG00000170522.10 protein_coding - - chr4:110045846-110199199:- chr4:110198247:- chr4:110967002-111120355:- chr4:111119403:- ENPEP ENSG00000138792.10 protein_coding + + chr4:110365733-110565285:+ chr4:110488541:+ chr4:111286889-111486441:+ chr4:111409697:+ chr4:110150649 chr4:110442756 NA NA chr4:111071805 chr4:111363912 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none GNS1/SUR4_family(2%)|ERAP1-like_C-terminal_domain(100%),Peptidase_M1_N-terminal_domain(37%),Peptidase_family_M1_domain(100%) ELO(0%)|ERAP1_C(100%),Peptidase_M1(100%),Peptidase_M1_N(17%) 2 5 18 360 125 ENST00000302274.8 ENST00000265162.10 upstream upstream duplicates(6),mismatches(1) GGAGCTGGGAGCGGAGGCGCAG___...GAGAACACTCGAAATCAAGCGCTTTACAGATTATTTTATTTTGTATAGAGAACACGTAGCGACTCCGAAGATCAGCCCCAATGAACATGTCAGTGTTGACTTTACAAGAATATGAATTCGAAAAGCAGTTCAACGAGAATGAAGCCATCCAATGGATGCAGGAAAACTG|GAGCATAGcGGCCACCGATCATGAACCAACAGATGCCAGGAAATCTTTTCCTTGTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCACCCATCCCAAAGAATACGGAGCACTTTCAAATATGCCAGTGGCG___AAAGAAGAGTCAGTGGATGATAAATGGACTCGAACAACTTTTGAGAAGTCTGTCCCCATGAGCACGTACCTGGTGTGCTTTGCTG MNMSVLTLQEYEFEKQFNENEAIQWMQENw|SIaATDHEPTDARKSFPCFDEPNKKATYTISITHPKEYGALSNMPVAKEESVDDKWTRTTFEKSVPMSTYLVCFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13708 XRCC6::ACO2 ENSG00000196419.13::ENSG00000100412.17 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1355 TRUE 2415 TRUE 936 XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ ACO2 ENSG00000100412.17 protein_coding + + chr22:41447830-41529273:+ chr22:41499726:+ chr22:41843834-41925277:+ chr22:41895730:+ chr22:41655990,chr22:41655988 chr22:41491132,chr22:41491120 NA NA chr22:42051994,chr22:42051992 chr22:41887136,chr22:41887124 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Ku70/Ku80_N-terminal_alpha/beta_domain(100%),Ku70/Ku80_beta-barrel_domain(88%)|Aconitase_C-terminal_domain(100%),Aconitase_family_(aconitate_hydratase)(100%) Ku(67%),Ku_N(100%)|Aconitase(100%),Aconitase_C(100%) 7 11 15 2671 731 ENST00000428575.6 ENST00000678688.1 downstream upstream duplicates(2),mismatches(1) GGTTTCAAGCCGTTGGTACTGCTGAAGAAACACCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTG___...GGGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAG|AAAGCTCTGGGTGTGCGGCAGTACCATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCGATGAGCCACTTTGAGCCCAACGAGTACATCCATTATGACCTGCTAGAGAAGAACATTAACATTGTTCGCAAACG___ACTGAACCGGCCGCTGACACTCTCGGAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCCAGGAAATTGAGCGAGGCAAGTCGTACCTGCGGCTGCGGCCGGACCGTGTGGCCATGCAGGATGCGACGGCCCAGATGGCCATGCTCCAGTTCATCAGCAGCGGGCTGTCCAAGGTGGC GSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP|essgcaavpcglspvptgqggdepl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13709 XRCC6::ACO2 ENSG00000196419.13::ENSG00000100412.17 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2415 TRUE 936 XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ ACO2 ENSG00000100412.17 protein_coding + + chr22:41447830-41529273:+ chr22:41499546:+ chr22:41843834-41925277:+ chr22:41895550:+ chr22:41655990,chr22:41655988 chr22:41491132,chr22:41491120 NA NA chr22:42051994,chr22:42051992 chr22:41887136,chr22:41887124 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Ku70/Ku80_N-terminal_alpha/beta_domain(100%),Ku70/Ku80_beta-barrel_domain(88%)|Aconitase_C-terminal_domain(100%),Aconitase_family_(aconitate_hydratase)(100%) Ku(67%),Ku_N(100%)|Aconitase(100%),Aconitase_C(100%) 2 0 17 2671 4 ENST00000428575.6 ENST00000676792.1 downstream upstream duplicates(3) CCATTACCTGAGGCCCTCCCTGTTCGTGTACCCAGAGGAGTCGCTGGTGATTG___GGAGCTCAACCCTGTTCAGTGCTCTGCTCATCAAGTGTCTGGAGAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAG|GCTGTGTTCCTTGTGGCTGCTTTGTCATCCCTGTCCTGCAGATGAGGAAGCTGAG...TGAGCTGCCCTCGGGGATGGACTCTCCTAAGTGCTCCATTGACAGTGGCTGTCATGTTTCTTCTTGCAGAAAGCTCTGGGTGTGCGGCAGTACCATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCGATGAGCCACTTTGAGCCCAACGAGTACATCCATTATGACCTGCTAGAGAAGA HYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP|gcvpcgcfvipvlqmrkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13710 XRCC6::ACO2 ENSG00000196419.13::ENSG00000100412.17 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2415 TRUE 936 XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ ACO2 ENSG00000100412.17 protein_coding + + chr22:41447830-41529273:+ chr22:41507446:+ chr22:41843834-41925277:+ chr22:41903450:+ chr22:41655990,chr22:41655988 chr22:41491132,chr22:41491120 NA NA chr22:42051994,chr22:42051992 chr22:41887136,chr22:41887124 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Ku70/Ku80_N-terminal_alpha/beta_domain(100%),Ku70/Ku80_beta-barrel_domain(88%)|Aconitase_C-terminal_domain(100%),Aconitase_family_(aconitate_hydratase)(100%) Ku(67%),Ku_N(100%)|Aconitase(100%),Aconitase_C(100%) 0 1 3 2671 9 ENST00000428575.6 ENST00000676714.1 downstream upstream duplicates(2) GAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAG|GAATGATGAGATATGCATtTTGCGGGGACTTAGTAGGAATTACGATGCTGGGAAAGCC...AATTGTGGAGCACCTAACAAGTGCCAG___ACTGAACCGGCCGCTGACACTCTCGGAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCCAGGAAATTG KEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP|gmmryafcgdlvgitmlgk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13711 XRCC6::ACO2 ENSG00000196419.13::ENSG00000100412.17 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2415 TRUE 936 XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ ACO2 ENSG00000100412.17 protein_coding + + chr22:41447830-41529273:+ chr22:41507791:+ chr22:41843834-41925277:+ chr22:41903795:+ chr22:41655990,chr22:41655988 chr22:41491132,chr22:41491120 NA NA chr22:42051994,chr22:42051992 chr22:41887136,chr22:41887124 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Ku70/Ku80_N-terminal_alpha/beta_domain(100%),Ku70/Ku80_beta-barrel_domain(88%)|Aconitase_C-terminal_domain(100%),Aconitase_family_(aconitate_hydratase)(100%) Ku(67%),Ku_N(100%)|Aconitase(100%),Aconitase_C(100%) 0 1 3 2671 643 ENST00000428575.6 ENST00000676748.1 downstream upstream none GAAGGAGGTTGCAGCATTGTGCAGATACACACCCCGCAGGAACATCCCTCCTTATTTTGTGGCTTTGGTGCCACAGGAAGAAGAGTTGGATGACCAGAAAATTCAGGTGACTCCTCCAG|ACTGAACCGGCCGCTGACACTCTCGGAGAAGATTGTGTATGGACACCTGGATG?CCCCGCCAGCCAGGAAATTGAGCGAGGCAAGTCGTACCTGCGGCTGCGGCCGGACCGTGTGGCCATGCAGGATGCGACGGCCCAG...AAAGACCTGCGCCGGGCCAAG___GACATCAACCAGGAAGTTTATAATTTCCTGGCAACTGCAGGTGCCAAATATGGCGTGGGCTTCTGGAAGCCTGGATCTGG KEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPP|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13712 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000257520.2 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2416 TRUE 937 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000257520.2 protein_coding - - chr14:36473207-36521149:- chr14:36477103:- chr14:36942412-36990354:- chr14:36946308:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 8 5 19 421 1367 ENST00000358716.8 ENST00000521945.1 upstream downstream duplicates(2) GGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|AACAGGCCTGAGGGAGAGGGAAAAGCGGATACCCACCTGTGTCGCTGTTTGCGTGCCAAGTCCAGGAACAGTCCATACAGCCCTGCTGCATCCCACGACGCTGTCACAAAGCAGGAGTTCATCCGAGGCCAAG___ATGGAGAAACTGAGGCCCAGAAATTGATGTCCAGAATGCTTTGCTCTTAGCCACTGTACTATTATGGCATATTTTATCTTTATGTATTGCATCA IIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|eqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13713 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000257520.2 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2416 TRUE 937 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000257520.2 protein_coding - - chr14:36473207-36521149:- chr14:36477878:- chr14:36942412-36990354:- chr14:36947083:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 4 3 24 421 602 ENST00000358716.8 ENST00000521945.1 upstream downstream duplicates(3),mismatches(1) GGAAAACAAGGAAAATGGGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|ATGGAGGAGGGGAGGAGACGAGTGGGGACCAGCTTGACATCCAGTCTTCACCTGGACATATGGAAAGAACAAATGTGCGATCTGCTCGTTCCCTCTGAAGGTCTCTGTTACGTATTTCCTCCTCTCCTCCAGAGCATAATAACCAATGACT ENKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|dgggeetsgdqldiqsspghmertnvrsarsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13715 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000257520.2 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2416 TRUE 937 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000257520.2 protein_coding - - chr14:36473207-36521149:- chr14:36473881:- chr14:36942412-36990354:- chr14:36943086:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none ATP-utilising_chromatin_assembly_and_remodelling_N-terminal(100%),DDT_domain(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%),Williams-Beuren_syndrome_DDT_(WSD)__D-TOX_E_motif(100%)| DDT(100%),WAC_Acf1_DNA_bd(100%),WHIM1(100%),WSD(100%)| 1 4 6 421 1878 ENST00000358716.8 ENST00000546983.2 upstream downstream duplicates(2) CTGTTAAGTGAGGAAAACAAGGAAAATGGGATAATTAAAACTGTGAATGAAGACGTAGAAGAGATGGAAATTGATGAACAAACAAAGGTCATAGTAAAAGACAG___ACTTTTGGGGATAAAAACAGAAACTCCAAGTACTGTATCAACAAATGCAAGTACACCACAATCAGTGAGCAGTGTGGTTCATTATCTGGCAATGGCACTCTTTCAAATAGAGCAGGGCATTGAGCGGCGTTTTCTGAAAGCTCCACTTG|ATGTTAATTATTCATACTGCATGACTGAGGATTTTGGAGGCAGAGAGAGATTCATCTGCAATATTTGGAACACCAATGGAGGTCTACGTCAACACAGAATTTATACAGCAGCTGGTGCTAGTCAGAGCTAATGACAGAATTTCAGTTTAATAAAAAGACCCCCAACTGAGCACACCATCTTGAAAAAAGTATACTTATCAAACAGCTTTCAATCAGTTCAAGAGAGACACCTTAATTGGGGAGAGGAAGAATTGCAGAGTAGTTTGTAA LLSEENKENGIIKTVNEDVEEMEIDEQTKVIVKDRLLGIKTETPSTVSTNASTPQSVSSVVHYLAMALFQIEQGIERRFLKAPL|dvnysycmtedfggrerficniwntngglrqhriytaagasqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 13716 CASC8::KCNQ3 ENSG00000246228.7::ENSG00000184156.18 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323015:- chr8:128302053-128494384:- chr8:128335260:- KCNQ3 ENSG00000184156.18 protein_coding - + chr8:132120861-132481095:- chr8:132185880:+ chr8:133133108-133493342:- chr8:133198127:+ NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 1 1 27 76 109 ENST00000501396.5 unknown upstream upstream duplicates(2),mismatches(3) CAGGTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG|CAAAGCTTTACCAGGAATGCCATTCTTCACCCCACATGTGCCCATGGCGGGCCATACCAAGgAATGGAGaCTTTG...CTaGAAGgCtAACCgGAAGCATTTACCCCAGAATGCAATtaTACCAGTAACAtAAGCCAGTCTCCCGAGACAGTCTCATACTCCTTGAATGTGGgCAGGACAGCCAGAATCAAGCACCCCAGGACAATCAGGAcCCTAGAGGGGAAGAAAGAAATGGACTAAGGAACCTTTGAGTCATGGCTTGCTTTGAGGCTAAGATGGGGAAAGGTGTCTTCCAGGATGAAGCTGCAACTTCTGCTGGACATTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13727 PDS5B::ENSG00000288015 ENSG00000083642.19::ENSG00000288015.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2420 TRUE 938 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32648880:+ chr13:33160589-33352157:+ chr13:33223017:+ ENSG00000288015 ENSG00000288015.1 lncRNA - - chr13:59121879-59230636:- chr13:59138250:- chr13:59696013-59804770:- chr13:59712384:- chr13:32650766,chr13:32650759 chr13:59212072,chr13:59212071 NA NA chr13:33224903,chr13:33224896 chr13:59786206,chr13:59786205 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 8 5 12 115 36 ENST00000315596.15 ENST00000666115.1 downstream downstream duplicates(8) CCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG___GGGTAGAAATATTTCTGTCATGGCTCATTCAAAGACTAGGACCAATGATGGAAAAATTACATATCCGCCTGGGGTCAAGGAAATATCAGATAAAATATCTAAAGAGGAGATGGTGAGACGATTAAAG|GAAAATTGAACAGAAGCTTGATGACTTCCCAAGAACAATTTGGTAGAAAAGAGTGCTGATGAAGAAGAGAGG___ACAACACAAAAGAAGACACAGAAGCACCATGGGCAAACCATGGAACAAGAACTGGAATGAATATCTATTCCACTACCTGAACTAAAGACTGCAGACGGAGA MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLK|en* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13728 PDS5B::ENSG00000288015 ENSG00000083642.19::ENSG00000288015.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2420 TRUE 938 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32648880:+ chr13:33160589-33352157:+ chr13:33223017:+ ENSG00000288015 ENSG00000288015.1 lncRNA - - chr13:59121879-59230636:- chr13:59123715:- chr13:59696013-59804770:- chr13:59697849:- chr13:32650766,chr13:32650759 chr13:59212072,chr13:59212071 NA NA chr13:33224903,chr13:33224896 chr13:59786206,chr13:59786205 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 1 4 115 28 ENST00000315596.15 ENST00000666115.1 downstream downstream duplicates(2) CCGGAGAGCCCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG___GGGTAGAAATATTTCTGTCATGGCTCATTCAAAGACTAGGACCAATGATGGAAAAATTACATATCCGCCTGGGGTCAAGGAAATATCAGATAAAATATCTAAAGAGGAGATGGTGAGACGATTAAAG|TGCTATCAAGGCCCTTCAGTACAAGATTGAAGTGAAGTGATGATATTTGACATCCTTGACTTCAAAGGAAAGCTTTGAAAATCTCACCATTAGATAAGATGCTTGCAGTGGATTTTTTTTTAAATTTGTAATTAGCCTTTATCAGATTGAGGAAGCTCCATTCTAGTTCTAGTTTTCC MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLK|cyqgpsvqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13729 PDS5B::ENSG00000288015 ENSG00000083642.19::ENSG00000288015.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2420 TRUE 938 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ ENSG00000288015 ENSG00000288015.1 lncRNA - - chr13:59121879-59230636:- chr13:59138250:- chr13:59696013-59804770:- chr13:59712384:- chr13:32650766,chr13:32650759 chr13:59212072,chr13:59212071 NA NA chr13:33224903,chr13:33224896 chr13:59786206,chr13:59786205 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion low none none none 0 1 0 82 36 ENST00000315596.15 ENST00000666115.1 downstream downstream none CCCGGAGAGCCCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG|GAAAATTGAACAGAAGCTTGATGACTTCCCAAGAACAATTTGGTAGAAAAGAGT...ACCATGGGCAAACCATGGAACAAGAACTGGAATGAATATCTATTCCACTACCTGAACTAAAGACTGCAGACGGAGAAAGGGAAGACAGGGGTTTAACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13730 NCBP3::ENPEP ENSG00000074356.17::ENSG00000138792.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCBP3 ENSG00000074356.17 protein_coding - - chr17:3802158-3846246:- chr17:3846041:- chr17:3705452-3749540:- chr17:3749335:- ENPEP ENSG00000138792.10 protein_coding + - chr4:110365733-110565285:+ chr4:110445901:- chr4:111286889-111486441:+ chr4:111367057:- chr17:3843950,chr17:3843955 chr4:110454510,chr4:110454512 NA NA chr17:3747244,chr17:3747249 chr4:111375666,chr4:111375668 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 4 18 271 19 ENST00000389005.6 unknown upstream downstream duplicates(12),mismappers(16),mismatches(3) GCAGGCAGCGATGGCGGCCGTACGGGGCCTGCGGGTGTCGGTGAAGGCGGAGGCCCCGGCGGGGCCGGCCCTGGGGCTCCCGTCCCCTGAGGCGGAGTCCGGTGTTGACCGTGGCGAGCCGGAGCCCATGGAGGTGGAGGAGGGCGAGCTGGAAATCGTGCCTGTGCGGCGCTCGCTCAAGGAACTGATCCCG|AGTTTCACTCTTGTTGCCCCGGCTGGAGTGCAATGGCGCAATCTCGGCTCACCATAACCTCTGCCTCCCGGGTTCAACTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCCGGCTATATAATGATGATTTTCTAAG MAAVRGLRVSVKAEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRRSLKELIP|sftlvapagvqwrnlgsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13731 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ion_transport_protein(34%)| Ion_trans(96%)| 5 8 11 199 60 ENST00000388996.10 ENST00000644021.1 upstream upstream duplicates(7),mismappers(2),mismatches(3) CGTTGGT___GTTCCTGATTGTCCTGGGGTGCTTGATTCTGGCTGTCCTGACCACATTCAAGGAGTATGAGACTGTCTCGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAGGTATTCTTTACAGcAATGTAAGAATGGaCTAATACAGAAAATTGGTACTGAGGAGTGGGG...ATTGCTATAAAGATACCTGAAAATGTAGGACCAACTTTGGAACTGGGTAATAGGACTGAGATAAGAAGAGTTTGAAGAATGCAGAAGAAAGTAGGAAGATG LVFLIVLGCLILAVLTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|eshlvaqtgvqwydldslkpllpgfkhfsclsllss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13732 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ion_transport_protein(34%)| Ion_trans(96%)| 1 6 3 199 16 ENST00000388996.10 ENST00000646670.1 upstream upstream duplicates(1) GTCCTGGGGTGCTTGATTCTGGCTGTCCTGACCACATTCAAGGAGTATGAGACTGTCTCGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGCTTTATGGAAAAGCCCACATGGTGAG VLGCLILAVLTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|dfcsentssgksplthpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13733 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ion_transport_protein(34%)| Ion_trans(96%)| 2 0 5 199 7 ENST00000388996.10 ENST00000521586.2 upstream upstream duplicates(2) CGACGCCCTGGAGAGACCGCGGGGCTGGGCGCTGCTTTACCACGCGTTGGT___GTTCCTGATTGTCCTGGGGTGCTTcATTCTGGCTGTCCTGtCCACATTC...CGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTTAACTGATGTGATGAAATAAAG GDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|aepshslyrvgqhwlsstskcrrcgscwpfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13734 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127394308:+ chr8:127568568-128431295:+ chr8:128406553:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ion_transport_protein(34%)| Ion_trans(96%)| 0 1 3 199 4 ENST00000388996.10 ENST00000646972.1 upstream upstream none CGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|AGGCCATAATGGTTAAGTAATTTCCCAATGTCACTTCACACTCAAGTGGAAGAGCAAGGTGGCCAAC...GACTGCTTGAAAATTTAGCCAGGTGTTAAAGGATCAAGACTGGAAGTGACTGGTGAACCATTTGCAGTGGTTCCAAAGGAGCCCTGCAATGGAAAAGAAAG GDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|eaimvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13736 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127414888:+ chr8:127568568-128431295:+ chr8:128427133:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Ion_transport_protein(34%)| Ion_trans(96%)| 1 0 1 199 78 ENST00000388996.10 ENST00000645215.1 upstream upstream none CCTGACCACATTCAAGGAGTATGAGACTGTCTCGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGC...AACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTCCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTAGCATCATGGTATGGCAG LTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|ghslwvnpadml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13738 PPIEL::INPP5B ENSG00000291129.1::ENSG00000204084.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1359 TRUE 2422 TRUE 940 PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39541720:- chr1:39987952-40025370:- chr1:40007392:- INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891454:- chr1:38326369-38412725:- chr1:38357126:- chr1:39531061,chr1:39531062,chr1:39531066,chr1:39531068,chr1:39531064 chr1:37910184,chr1:37910184,chr1:37910184,chr1:37910185,chr1:37910184 NA NA chr1:39996733,chr1:39996734,chr1:39996738,chr1:39996740,chr1:39996736 chr1:38375856,chr1:38375856,chr1:38375856,chr1:38375857,chr1:38375856 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Endonuclease/Exonuclease/phosphatase_family(100%),RhoGAP_domain(100%) |Exo_endo_phos(100%),RhoGAP(100%) 8 6 7 57 387 ENST00000692918.1 ENST00000373024.8 upstream downstream duplicates(4),mismatches(2) CTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCGGCTGGCTGCATCCAAACCCTCCTGCGTTCCGACGTCGTGCCCATGACCACAG___AGAATTTTCTCTACATGTGCACCCATTTAAAGGACTCGGCTTCAAGGGAAGCAGCTTCCACCGCATTATCCCCCAGTTCATTTGCCAGGGCAGTGATTTCACAAACCACGGTGGCACCAGGG|GTGGTTCTAACTTTGATGGTTTGAGACCAAATGGGAAGGGAGTGCCTATGGACCAAAGCTCCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAG___ACAGAATAAATCCAAGTCCGAAATTACTGACATGGTTCGCTCCTCCACTATCACAGTGTCGGACAAGGCTCATATTTTATCCATGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13739 PPIEL::INPP5B ENSG00000291129.1::ENSG00000204084.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2422 TRUE 940 PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39537191:- chr1:39987952-40025370:- chr1:40002863:- INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891454:- chr1:38326369-38412725:- chr1:38357126:- chr1:39531061,chr1:39531062,chr1:39531066,chr1:39531068,chr1:39531064 chr1:37910184,chr1:37910184,chr1:37910184,chr1:37910185,chr1:37910184 NA NA chr1:39996733,chr1:39996734,chr1:39996738,chr1:39996740,chr1:39996736 chr1:38375856,chr1:38375856,chr1:38375856,chr1:38375857,chr1:38375856 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Endonuclease/Exonuclease/phosphatase_family(100%),RhoGAP_domain(100%) |Exo_endo_phos(100%),RhoGAP(100%) 1 0 7 7 387 ENST00000688592.1 ENST00000373024.8 upstream downstream duplicates(1),mismatches(2) TTGTATTCCTGGACTCAAGTGATCCTCCTGCCTTGGCCTGCCAAAGTGCTGGGATTgCAGGCGTGAGCCACGGTGCCTGGCCCCAGGCCTTTTAGACTGAACTCAGACATCACCTCCTTCAGAAAGCCTTCATGATGAGTGTTTGT|GTGGTTCTAACTTTGATGGTTTGAGACCAAATGGGAAGGGAGTGCCTATGGACCAAAGCTCCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAG___ACAGAATAAATCCAAGTCCGAAATTACTGACATGGTTCGCTCCTCCACTATCACAGTGTCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13740 PPIEL::INPP5B ENSG00000291129.1::ENSG00000204084.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2422 TRUE 940 PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39547581:- chr1:39987952-40025370:- chr1:40013253:- INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891456:- chr1:38326369-38412725:- chr1:38357128:- chr1:39531061,chr1:39531062,chr1:39531066,chr1:39531068,chr1:39531064 chr1:37910184,chr1:37910184,chr1:37910184,chr1:37910185,chr1:37910184 NA NA chr1:39996733,chr1:39996734,chr1:39996738,chr1:39996740,chr1:39996736 chr1:38375856,chr1:38375856,chr1:38375856,chr1:38375857,chr1:38375856 NA NA sense sense unknown exon/splice-site intron deletion medium none |Endonuclease/Exonuclease/phosphatase_family(100%),RhoGAP_domain(100%) |Exo_endo_phos(100%),RhoGAP(100%) 0 1 1 36 387 ENST00000692918.1 ENST00000373024.8 upstream downstream none CAGAAAGCCAGGAG___CGCAGCCCATTTACTGCCTTCTCCAGGAAGCTTTTCTGAATCCTCCAGTGAGTA|AGGTGGTTCTAACTTTGATGGTTTGAGACCAAATGGtAAGGGAGTGCCTATGGACCAAAGCTCCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAG___ACAGAATAAATCCAAGTCCGAAATTACTGACATGGTTCGCTCCTCCACTATCACAGTGTCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13757 EIPR1::ALLC ENSG00000032389.13::ENSG00000151360.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3377648:- chr2:3192696-3381601:- chr2:3381419:- ALLC ENSG00000151360.10 protein_coding + - chr2:3658200-3702671:+ chr2:3674004:- chr2:3705790-3750261:+ chr2:3721594:- chr2:3362812,chr2:3362814 chr2:3692429,chr2:3692428 NA NA chr2:3366583,chr2:3366585 chr2:3740019,chr2:3740018 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 3 9 431 15 ENST00000398659.8 unknown upstream downstream duplicates(4),mismatches(4) GTCGTTTGCTGCGGGGAGGGAATGAATGGGCGCTGGGAACACGCCCGCGAGGTGGGGACGCGCCGGCCGTAGCGAGGTCCTTAGCGTGTGAGTGGCCGGGGTCGGGTCGCTTCCCCGCAGCATGGAGGACGATGCACCAGTGATCTACGGGCTGGAGTTCCAG|TGAAACATTATGAGATGAAGTAAAAAGAAAACGTGAAATCACCTAGGGGAAGCGACAGAATCTGCAGTTAAGCCATGATGCCTTGAAATGCTTCCATTTCATTGTCTGCCTCCTCCTTCTTCTTCTCTTCCCACCCTTTTTTCCGATTCTCCTTTACCATCTGGAG___GCACCTGCGGCCTCCC MEDDAPVIYGLEFQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13758 VPS8::AGRN ENSG00000156931.16::ENSG00000188157.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1362 TRUE 2425 FALSE NA VPS8 ENSG00000156931.16 protein_coding + + chr3:184812143-185052614:+ chr3:184886156:+ chr3:184529931-184770402:+ chr3:184603944:+ AGRN ENSG00000188157.15 protein_coding + + chr1:1020120-1056118:+ chr1:1040665:+ chr1:955500-991498:+ chr1:976045:+ chr3:184889657,chr3:184889655 chr1:1038372,chr1:1038367 NA NA chr3:184607445,chr3:184607443 chr1:973752,chr1:973747 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Golgi_CORVET_complex_core_vacuolar_protein_8(0%)|EGF-like_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%),SEA_domain(100%) Vps8(31%)|EGF(100%),Kazal_1(100%),Kazal_2(100%),Laminin_EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),SEA(100%) 4 5 7 149 478 ENST00000287546.8 ENST00000379370.7 downstream upstream duplicates(3),mismatches(2),multimappers(1) TGCCAGTAAGCGAAAGGCTATTGTTGCAGACCGG___ATGGTAGAAATCCTATTCCATTATGCAGATCGAGCTCTGAAAAAGTGCCCAGACCAAGGAAAAATCCAAGTGATGGAGCAGCATTTTCAG___GATATGGTGCCTGTCATAGTTGATTACTGCCTTCTGCTGCAGCGAAA|CGTGCCGGGGAATGCTGTGCGGCTTCGGCGCCGTGTGCGAGCCCAACGCGGAGGGGCCGGGCCGGGCGTCCTGCGTCTGCAAGAAGAGCCCGTGCCCCAGCGTGGTGGCGCCTGTGTGTGGGTCGGACGCCTCCACCTACAGCAACGAATGCGAGCTGCAGCGGGCGCAGTGCAGCCAGCAGCGCCGCATCCGCCTGCTCAGCCGCGGGCCGTGCG___GCTCGCGGGACCCCTGCTCCAACGTG ASKRKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRn|vpgnavrlrrrvraqrggagpgvlrlqeepvpqrggacvwvgrlhlqqrmraaagavqpaaphppaqpravrlagpllqr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13760 UNC45A::DYRK1A ENSG00000140553.18::ENSG00000157540.22 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1363 FALSE NA FALSE NA UNC45A ENSG00000140553.18 protein_coding + + chr15:90930180-90954093:+ chr15:90945063:+ chr15:91473410-91497323:+ chr15:91488293:+ DYRK1A ENSG00000157540.22 protein_coding + + chr21:37365573-37526358:+ chr21:37496118:+ chr21:38737875-38898660:+ chr21:38868420:+ chr15:90945851,chr15:90945848 chr21:37493676,chr21:37493670 NA NA chr15:91489081,chr15:91489078 chr21:38865978,chr21:38865972 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Myosin-binding_striated_muscle_assembly_central(43%),Tetratricopeptide_repeat(100%)|Protein_kinase_domain(35%) HD(100%),HD_4(100%),TPR_16(100%),TPR_6(100%),TPR_8(100%),UNC45-central(42%)|PK_Tyr_Ser-Thr(0%),Pkinase(37%) 5 2 8 239 254 ENST00000394275.7 ENST00000647188.2 downstream upstream duplicates(4),mismatches(1) AGTCTCTCAAGGACCCCAACAACAGCCTCACCCTCTGGGTCATCGACCAAG___GTCTGAAAAAGATTTTGGAAGTGGGGGGCTCTCTACAGGACCCTCCTGGGGAGCTCGCAGTGACCGCAAACAGCCGCATGAGCGCCTCTATTCTCCTCAGCAAGCTCTTTGATGACCTCAAGTGTGATGCGGAGAGGGAGAATTTCCACAGACTTTGTGAAAACTACATCAA|GTAGATCAGATGAATAAAATAGTGGAAGTTCTGGGTATTCCACCTGCTCATATTCTTGACCAAGCACCAAAAGCAAGAAAGTTCTTTGAGAAGTTGCCAGATGGCACTTGGAACTTAAAGAAGACCAAAGATGGAAAACGG___GAGTACAAACCACCAG SLKDPNNSLTLWVIDQGLKKILEVGGSLQDPPGELAVTANSRMSASILLSKLFDDLKCDAERENFHRLCENYIk|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Dual specificity tyrosine-phosphorylation-regulated kinase 1A CMGC DYRK DYRK1 Q13627 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13762 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1364 TRUE 2426 TRUE 941 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129569843:- chr3:129274057-129325519:- chr3:129288686:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129569173,chr3:129569180 chr3:129710362,chr3:129710366 NA NA chr3:129288016,chr3:129288023 chr3:129429205,chr3:129429209 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none IPT/TIG_domain(100%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 3 7 5 687 133 ENST00000324093.9 ENST00000393238.8 upstream downstream duplicates(1) CTCTCACCCTCGTTATCCAC___AAGGAGCAGGACAGCCTGGGGCTCCAGAGTCACGAGTACCGGGTCAAGATAGGCCAAGTAAGCTGCGACATCCAGATTGTC...CTCGGTCAACGAGTCCCTGGGCGCGGCCGTGGGGCAGCTGCCCATCACA___ATCCAGGTAGGGAACTTCAACCAGACCATCGCCACACTGCAGCTGGGGGGCAGCGAGACGGCCATCATCGTGTCCATCGTCATCTGCAGCGTCCTGCTGCTGCTCTCCGTGGTGG|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGG SVNESLGAAVGQLPITIQVGNFNQTIATLQLGGSETAIIVSIVICSVLLLLSVV|drtvgskqpcpniqcsglqyrwqhphrlcgwntrpsahkgchcspaaedpeahrtnqdctnspgrqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13764 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2426 TRUE 941 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129570786:- chr3:129274057-129325519:- chr3:129289629:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129569173,chr3:129569180 chr3:129710362,chr3:129710366 NA NA chr3:129288016,chr3:129288023 chr3:129429205,chr3:129429209 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPT/TIG_domain(100%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 0 1 3 879 133 ENST00000324093.9 ENST00000393238.8 upstream downstream none CTCTCACCCTCGTTATCCAC___AAGGAGCAGGACAGCCTGGGGCTCCAGAGTCACGAGTACCGGGTCAAGATAGGCCAAGTAAGCTGCGACATCCAGATTGTCTCTGACAGAATCATCCACTGCTCGGTCAACGAGTCCCTGGGCGCGGCCGTGGGGCAGCTGCCCATCACA|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGtCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAAC...AACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAAC LTLVIHKEQDSLGLQSHEYRVKIGQVSCDIQIVSDRIIHCSVNESLGAAVGQLPIT|IERLEVSSLAQTSSAVvSSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13765 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2426 TRUE 941 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129578329:- chr3:129274057-129325519:- chr3:129297172:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129569173,chr3:129569180 chr3:129710362,chr3:129710366 NA NA chr3:129288016,chr3:129288023 chr3:129429205,chr3:129429209 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 1 0 0 456 133 ENST00000324093.9 ENST00000393238.8 upstream downstream none CCCGTGTTCCGCGCCCCGGGCCTCACCTCCGTGGCCGTGGCCAGCGTCAACAACTACACAGCGGTCTTCCTGGGCACGGTCAACGGGAGGCTTCTCAAG...CTGCTCTCACCCCTGGCACCCGTGCCTACGGGTGGCTCCCAGAACATCCTGGTGCCTCTGGCCAACACTGCCTTTTTCCAG|ATCGAACGGTTGGAAGTAAG LLSPLAPVPTGGSQNILVPLANTAFFQ|IERLEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13766 RAP2A::PCDH9 ENSG00000125249.7::ENSG00000184226.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAP2A ENSG00000125249.7 protein_coding + + chr13:97434169-97469128:+ chr13:97434784:+ chr13:98086423-98121382:+ chr13:98087038:+ PCDH9 ENSG00000184226.15 protein_coding - + chr13:66302834-67230445:- chr13:66312885:+ chr13:66876966-67804577:- chr13:66887017:+ chr13:97439058 chr13:66303954 NA NA chr13:98091312 chr13:66878086 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(62%)| Arf(1%),Ras(1%),Roc(1%)| 6 0 8 380 10 ENST00000245304.5 unknown downstream upstream duplicates(1) CGTAGGTCTATGTCGCGGGCGGCGGCGGCGGCGGCGGCCGCGGAGGGACGATGCGCGAGTACAAAGTGGTGGTGCTGGGCTCGGGCGGGGTAGGCAAATCCGCCCTGACCGTGCAGTTCGTGACCGGCACCTTCATCGAGAAATACGACCCCACCATCGAGGACTTCTACCGCAAGGAGATCGAGGTGGATTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCGGGCACCGAGCAGTTCGCGTCCATGCGGGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTCGTCTACAGCCTCGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCGGGACCAGATCATCCGCGTGAAGCG|ATGAAAAGTCAACATTTGCAGATGGAGACAGTCCAAATACAATAACACATGGCCACGCCAAGCAGGGAATTCACTGCCAGAGAAGATATTGCTATTTGAACAGACTTTATGGCTCACTAAGAATGAAGAGCATTTCCTTGTACATCTTCAGCCTTCTTCTGCAGGGCATGAAAATAAGCTGCCTTTTTCTCATCTGCTAAAGCTAATTGCTGTAAAGAAAAGTTTCTC MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13767 ENSG00000254394::CNGB3 ENSG00000254394.2::ENSG00000170289.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82488273:+ chr8:82945768-83874161:+ chr8:83400508:+ CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86671098:- chr8:87566205-87755903:- chr8:87683326:- chr8:82546647,chr8:82546648 chr8:86697256,chr8:86697256 NA NA chr8:83458882,chr8:83458883 chr8:87709484,chr8:87709484 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Cyclic_nucleotide-binding_domain(100%) |Copine(100%),cNMP_binding(100%) 5 2 6 8 5 ENST00000663058.1 ENST00000681746.1 downstream downstream none GTTTCATTCTTGAAGTCAGTGAGACCAAGAACCCACCAATTCTGGACACATGGCCACTGAGCACTCCCTGCTCGGGGCTGCACCTCAGCAACAACAGAGGCTATGATACCGGGCTGGAGGGCGCTGAAACGTTAG___GAACAAGCTCTGAAGTCTTGATCCAAAACAGACAAGGCTTTAATATGAAAGCATTTTTCTTTGAAGAAGTTCACCCTGAAGCCTTGGCCCAATGATCTCAGAAGATGAGAGAGAATGGCAAACCAAAAA|CCCACAAAACAAACCGCCTGCAGCTCCTGTTATAAATGAGTATGCCGATGCCCAGCTACACAACCTGGTGAAAAGAATGCGTCAAAGAACAGCCCTCTACAAGAAAAAGTTGGTAGAGGGAGATCTCTCCTCACCCGAAGCCAGCCCACAAACTG___CAAAGCCCACGGCTGTACCACCAGTAAAAGAAAGCGATGATAAGCCAACAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13768 CYLD::KLF3 ENSG00000083799.18::ENSG00000109787.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1365 FALSE NA FALSE NA CYLD ENSG00000083799.18 protein_coding + + chr16:50742050-50801935:+ chr16:50754424:+ chr16:50775961-50835846:+ chr16:50788335:+ KLF3 ENSG00000109787.13 protein_coding + + chr4:38664197-38701517:+ chr4:38697082:+ chr4:38665818-38703138:+ chr4:38698703:+ chr16:50766918,chr16:50766918 chr4:38695473,chr4:38695470 NA NA chr16:50800829,chr16:50800829 chr4:38697094,chr4:38697091 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none CAP-Gly_domain(52%),Phosphorylation_region_of_CYLD__unstructured(0%)|Zinc_finger__C2H2_type(65%) CAP_GLY(56%),CYLD_phos_site(0%)|zf-C2H2(65%) 3 3 6 136 201 ENST00000427738.8 ENST00000261438.10 downstream upstream mismatches(2) TGGAACAGTTATATTCTGTGATGTTTTGCCAGGAAAAGAAAGCTTAGGATATTTTGTTGGTGTGGACATG___GATAACCCTATTGGCAACTGGGATGGAAGATTTGATGGAGTGCAGCTTTGTAGTTTTGCGTGTGTTGAAAGTACAATTCTATTGCACATCAATGATATCATCCCAG|GAGAAAAACCCTACAAATGTACATGGGAAGGGTGCACATGGAAGTTTGCTCGGTCTGATGAACTAACAAGACATTTCCGAAAACATACTGGAATCAAACCTTTCCAGTGCCCGGACTGTGACCGCAGCTTCTCCCGTTCTGACCATCTTGCCCTCCATAGGAAACGCCACATGCTAGTCTGATTGCCTCTGTGTCCTGCCTCAGCGTGACTCCCC...TCCCTCTCCTTACCACGGGTCAGACCTAAAGAATGTGAACAC-TTTTTTTTTTTTTCTGGGGATGCTAAGCAAACCCTTCTTACAGATACGTTTAATGTAAT...CTTGCCAGAGACATTCTTACCTCTGCCCTGTGATAATATTTTATGCTTGACAGTGAAAACAAGTGTGGCCCCTTGCACCGGTTAGCTAGAAGTACAGCCAG GTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP|gEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3181 chr16:50742305-50742377:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE familial cylindromatosis gene 1 Yes cylindroma cylindroma familial cylindromatosis, familial trichoepithelioma, Brooke-Spiegler syndrome epithelial TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 13774 SPTBN5::CAPN3 ENSG00000137877.10::ENSG00000092529.26 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPTBN5 ENSG00000137877.10 protein_coding - - chr15:41848146-41894053:- chr15:41865808:- chr15:42140344-42186251:- chr15:42158006:- CAPN3 ENSG00000092529.26 protein_coding + - chr15:42359498-42412949:+ chr15:42407271:- chr15:42651696-42705147:+ chr15:42699469:- chr15:41865790,chr15:41865798 chr15:42409325,chr15:42409330 NA NA chr15:42157988,chr15:42157996 chr15:42701523,chr15:42701528 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(57%)| CH(100%),Spectrin(54%)| 3 4 1 21 13 ENST00000320955.8 unknown upstream downstream duplicates(2),mismatches(1) CAGGCCTTTGAGGCTGAAGTCCAGGCCCATGAGGAGGTCATGACCTCTGTTGCCAAG___...GAGGACCTGAGGCAGGCAATGGCCCTCAGGGG...CTGGAGGACAGGCGGAACTTCCTGGAGTTCCTGCAGAGAGTGGACCTTGCAGAGGCCTGGAT...___GAGGTGAAGATGAATGTTGGTGACCTGGGCCAGGACCTGGAGCACTGCCTGCAGCTCCGACGGCGGCTCCGCGAGTTCCGAGGAAACTCGGCCGGG|GGCTCTTGTGGGGATCAAATGAGATACTGAATGCAAAATCATACTGCAAAAACATTTAAGATGCTACACAAACAAGGGATATTTTCAAGACATGCTCGTGCAAGTGACAAGGATATGAAAAGGACGGAGAGCGGCTGCTGCATGGTGCCAACACTGTGGATGCGGTGCACCTGTAGGGAAAGCCGGGGGAAGGCAAGGCTGTGGGGATTGAGGCTGCAATGCAGAGAACAACTGGGCAGGCAGAGCCTCTCGGAGCAGAAAAGCAGCCCGCCTGGACTCATGCACCACTGCC EVKMNVGDLGQDLEHCLQLRRRLREFRGNSAG|gscgdqmry* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4310 chr15:41866495-41866551:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13779 DNAH5::TGFBR3 ENSG00000039139.11::ENSG00000069702.11 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DNAH5 ENSG00000039139.11 protein_coding - - chr5:13690328-14011818:- chr5:14011648:- chr5:13690437-14011927:- chr5:14011757:- TGFBR3 ENSG00000069702.11 protein_coding - - chr1:91680343-91906335:- chr1:91758750:- chr1:92145900-92371892:- chr1:92224307:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Zona_pellucida-like_domain(100%) |Zona_pellucida(100%) 1 5 0 61 30 ENST00000681290.1 ENST00000370399.6 upstream downstream duplicates(1),mismatches(3) GCGGCCTGAGCGGACTCCGGAGAGCAGACGAGGGCAGGGCGCGGCGGCTGCGGCGGGGTCCTCCCTGCACCGGGGGAGCGCTACGAGTCCCAGCGGAGCGCCGCAGCACAGCGCCATGGACAAACTG|GTCACACTTCACCTGAATCCCATCTCCTCAGTCCACATCCACCACAAGTCTGTTGTGTTCCTGCTCAACTCCCCACACCCCCTGGTGTGGCATCTGAAGACAGAGAGACTTGCCACTGGGGTCTCCAGACTGTTTTTG___GTGTCTGAGGGTTCTGTGGTCCAGTTTTCATCAGCAAACTTCTCCTTGACAGCAGAAACAGAAGAAAGGAACTTCCCCCATGGAAATGAACATCTGTTAAATTGGGCCCGAAAAGAGTATGGAGCAGTTACTTCATTCACCGAACTCAAGATAGCAAGAAACATTTATATTAAAG MDKL|VTLHLNPISSVHIHHKSVVFLLNSPHPLVWHLKTERLATGVSRLFLVSEGSVVQFSSANFSLTAETEERNFPHGNEHLLNWARKEYGAVTSFTELKIARNIYIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13781 SCFD2::USP46 ENSG00000184178.17::ENSG00000109189.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53062588:- chr4:53739149-54232233:- chr4:53928755:- USP46 ENSG00000109189.13 protein_coding - - chr4:52590960-52659301:- chr4:52602054:- chr4:53457126-53525468:- chr4:53468220:- chr4:53019749,chr4:53019753 chr4:52603029,chr4:52603030 NA NA chr4:53885916,chr4:53885920 chr4:53469195,chr4:53469196 NA NA sense sense unknown intron CDS/splice-site deletion high none Sec1_family(49%)|Ubiquitin_carboxyl-terminal_hydrolase(36%) Sec1(52%)|UCH(13%),UCH_1(10%) 1 0 5 2 85 ENST00000401642.8 ENST00000441222.8 upstream downstream none GAAAAAGTCAAGAAAGCATTGGCTCAGGTCTTCTGTGAGGAATCTGGATcGTCACCTTTGCTGCAAAAAATTACGG___GTAGGAAGAACACCTGATTTGGATT...CTCCCCAGCTGACAAGAAATAATGTTTCTGCTAGTAG|GATGAGGGTAAAAAAGCTGCCCATGATCTTGGCCCTGCACCTAAAGCGGTTCAAGTACATGGAGCAGCTGCACAGATACACCAAGCTGTCTTACCGTGTGGTCTTCCCTCTGGAACTCCGGCTCTTCAACACCTCCAGTGATGCAGTGAACCTGGACCGCATGTATGACTTGGTTGCGGTGGTCGTTCACTGTGGCAG___TGGTCCTAATCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13782 KIF5A::R3HDM2 ENSG00000155980.13::ENSG00000179912.21 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIF5A ENSG00000155980.13 protein_coding + + chr12:57546026-57586633:+ chr12:57550400:+ chr12:57939809-57980416:+ chr12:57944183:+ R3HDM2 ENSG00000179912.21 protein_coding - + chr12:57253762-57431043:- chr12:57389023:+ chr12:57647545-57824826:- chr12:57782806:+ chr12:57555337,chr12:57555337,chr12:57555334 chr12:57351063,chr12:57351067,chr12:57351057 NA NA chr12:57949120,chr12:57949120,chr12:57949117 chr12:57744846,chr12:57744850,chr12:57744840 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Kinesin_motor_domain(2%)| Dynamitin(100%),Kinesin(0%),Microtub_bd(0%)| 3 1 2 75 4 ENST00000674619.1 unknown downstream upstream duplicates(1) CATCCCGCTGCCGCAGGAGAGAGACAGCGCGCCCCGGCCCTGCTCCCCAGGCTTCGCCCGGGCGCCCTCAACTCTGTCCCCAGAGACTGAGCACCTGTCCTCCGCCTCGGCCTCTGCTGAGAGCCCTCTCtTCTGGAGCACACACCACCCCTGCAGCCCAAGAAGAGTCCCAGCCCCACGCCGGCTACCACCATGGCGGAGACCAACAACGAATGTAGCATCA...GCCCCTGAACCAGGCTGAGATTCTGCGGGGAGACAAGTTCATCCCCATTTTCCAAGGGGACGACAGCGTCGTTATTGGG|GGTTACTAATAAACAACAGAATGGTTTTGGACTCATCTCCTTTGCCTTCTTGGTCTACCCTCCAGAGGAAATGCAAACAAG...ACATTCGTTCATGCAGCAAATAACTACTGAGTAACCACTTGCAAAGCACCATGATAGGCAATGTTGAAAATAGCTGACTAATATACAAAGCTATACCCAGGTTCATCAGCAGAAGCAACAGGCTGGAAATACAAATAAAACTCTACTGGTAAGACGAG PLNQAEILRGDKFIPIFQGDDSVVIG|gy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13786 FASTKD3::ENSG00000287031 ENSG00000124279.12::ENSG00000287031.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FASTKD3 ENSG00000124279.12 protein_coding - - chr5:7859159-7869037:- chr5:7862823:- chr5:7859272-7869150:- chr5:7862936:- ENSG00000287031 ENSG00000287031.1 lncRNA + - chr5:6378674-6411690:+ chr5:6382490:- chr5:6378787-6411803:+ chr5:6382603:- chr5:7862774,chr5:7862783 chr5:6383753,chr5:6383759 NA NA chr5:7862887,chr5:7862896 chr5:6383866,chr5:6383872 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none FAST_kinase-like_protein__subdomain_1(100%),FAST_kinase-like_protein__subdomain_2(84%)| FAST_1(100%),FAST_2(72%)| 4 1 0 182 39 ENST00000264669.10 unknown upstream downstream duplicates(1) CCTCAGTCCTGGAATGCCCTTTCTATAAG___GGTCCAAAACTCCTTCCTAAATATCAAGTGAAGTCATTTCTTACCCCATGCTGTTCCCTGGAGACCCCTGTGGATTCTCAGCTTTATAGATATGTGAAGATTGGGCTGACTAACCTTTTAGGAGCAAGATTATATTTTGCTCCAAAAGTGTTGACACCCTATTGTTATACAATAG|GATGTCCACATAACGTATCAACCAAACTGGGACATGTTTGACAGTGAGTGGAAGAGTGCTATTAATAATCACACGAAGACAACAGACATAATTGGGTCTTGCCCATTCTCAGATGTATGTAAACTCATG SVLECPFYKGPKLLPKYQVKSFLTPCCSLETPVDSQLYRYVKIGLTNLLGARLYFAPKVLTPYCYTI|gcphnvstklghv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13787 TCEA2::ITGAE ENSG00000171703.17::ENSG00000083457.12 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2429 TRUE 942 TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64066538:+ chr20:62681189-62703700:+ chr20:62697891:+ ITGAE ENSG00000083457.12 protein_coding - - chr17:3714628-3801188:- chr17:3751874:- chr17:3617922-3704482:- chr17:3655168:- chr20:64067491 chr17:3752878 NA NA chr20:62698844 chr17:3656172 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none TFIIS_helical_bundle-like_domain(32%)|FG-GAP_repeat(49%),Integrin_alpha(100%),Integrin_alpha_cytoplasmic_region(100%) Med26(9%)|Haspin_kinase(100%),Integrin_alpha(100%),Integrin_alpha2(100%) 2 2 1 116 9 ENST00000395053.7 ENST00000263087.9 downstream downstream duplicates(2) CAAGAAGAGCGCG___GAGGGAGCCATGGATTTGCTGCGGGAGCTGAAGGCCATGCCTATCACGCTGCACCTGCTCCAG|GATGGTTCTTTCTCCTTGGCACGCATACTGAGTGGGCACCCCGGGTTCACCAATGCCCGCTTTGGCTTTGCCATG...AGGATAAGCTCACAGATGTGGCCATCGGGGCCCCCCTGGAAGGTTTTGGGGCAGATGATGGTGCCAGCTTCGGCAGTGTGTATATCTACAATGGACACTGGGACGGCCTCTCCGCCAGCCCCTCGCAG___CGGATCAGAGCCTCCACGGTGGCCCCAGGACTCCAGTACTTCGGCATGTCCATGGCTGGTGGCTTTGATATTAGT KKSAEGAMDLLRELKAMPITLHLLQ|DGSFSLARILSGHPGFTNARFGFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13788 TCEA2::ITGAE ENSG00000171703.17::ENSG00000083457.12 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2429 TRUE 942 TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64067020:+ chr20:62681189-62703700:+ chr20:62698373:+ ITGAE ENSG00000083457.12 protein_coding - - chr17:3714628-3801188:- chr17:3751874:- chr17:3617922-3704482:- chr17:3655168:- chr20:64067491 chr17:3752878 NA NA chr20:62698844 chr17:3656172 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none TFIIS_helical_bundle-like_domain(100%)|FG-GAP_repeat(49%),Integrin_alpha(100%),Integrin_alpha_cytoplasmic_region(100%) Med26(100%)|Haspin_kinase(100%),Integrin_alpha(100%),Integrin_alpha2(100%) 0 2 2 80 9 ENST00000361317.6 ENST00000263087.9 downstream downstream duplicates(1) CAAGTCTCTCATCAAGTCCTGGAAGAAGCTCCTGG|GATGGTTCTTTCTCCTTGGCACGCATACTGAGTGGGCACCCCGGGTTCACCAATGCCCGCTTTGGCTTTGCCATGGCGGCTATGGGGGATCTCAGTCAGGATAAGCTCACAGATGTGGCCATCGGGGCCCCCCTGGAAGGTTTTGGGGCAGATGATGGTGCCAGCTTCGGCAGTGTGTATATCTACAATGGACACgGGGACGGCCTCTCCGCCAGCCCCTCGCAG___CGGATCAGAGCCTCCACGGTGGCCCCAGGACTCCAGTACTTCGGCATGTCCATGGCTGGTGGCTTTGATATTAGT...CTTCAACGGCGTCGTGAATGTCCGTTTATGTTTTGAAATCAGCTCTGTAACCACAGCCTCTGAGTCAG___GCCTCCGtGAGGCACTTCTCAACTTCACGCTGG KSLIKSWKKLL|gwffllgthtewaprvhqcplwlchggyggsqsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13795 ADGRL3::UNC5C ENSG00000150471.17::ENSG00000182168.16 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:62070989:+ chr4:62066044-62944053:+ chr4:62936707:+ UNC5C ENSG00000182168.16 protein_coding - - chr4:95162504-95549206:- chr4:95169399:- chr4:96083655-96470357:- chr4:96090550:- chr4:62072210,chr4:62072211 chr4:95169625,chr4:95169624 NA NA chr4:62937928,chr4:62937929 chr4:96090776,chr4:96090775 NA NA sense sense stop-codon 3'UTR CDS/splice-site inversion high none 7_transmembrane_receptor_(Secretin_family)(100%),GPCR-Autoproteolysis_INducing_(GAIN)_domain(100%),GPCR_proteolysis_site__GPS__motif_(100%),Galactose_binding_lectin_domain(100%),Latrophilin_Cytoplasmic_C-terminal_region(100%),Olfactomedin-like_domain(100%)|Death_domain(63%) 7tm_2(100%),GAIN(100%),GPS(100%),Gal_Lectin(100%),Latrophilin(100%),OLF(100%)|Death(14%) 3 0 1 21 3 ENST00000683033.1 ENST00000453304.6 downstream downstream mismatches(1) GTTACCACCAGCACCCAGACCGAACCCCCACCGGCCAAATGTGGTGATGCCGAAGATGTTTACTACAAAAGCATGCCAAACCTAGGCTCCAGAAACCACGTCCATCAGCTGCAT...GAAGTTCAAAAGGACCGGCTCATTTGGTCACTAGTCTATAGAAGATGACACAGAAATTGGAACCAACAAAACTGCTAACACCTTGTTGACTGTTCTGAGTTGATATAAGCAGTGGTAATAAT|GTACTTGAATTACTTTGCCACCAAATCCAGCCCAACTGGCGTAATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCAGCTGTCTTGGAAGAAATGGGAAGACATGAAACGGTGGTGTCCTTAGCAGCAGAAGGGCAGTATTAACCACCATGCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13796 ENSG00000225096::TFAP2D ENSG00000225096.3::ENSG00000008197.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000225096 ENSG00000225096.3 lncRNA + + chr6:57961438-58438364:+ chr6:57962248:+ chr6:58287716-58764642:+ chr6:58288526:+ TFAP2D ENSG00000008197.5 protein_coding + - chr6:50713526-50773033:+ chr6:50752961:- chr6:50681239-50740746:+ chr6:50720674:- chr6:58011249,chr6:58011250 chr6:50769023,chr6:50769022 NA NA chr6:58337527,chr6:58337528 chr6:50736736,chr6:50736735 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' high none none none 2 2 0 151 2 ENST00000670654.1 unknown downstream downstream none CGTAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGATCAAGCGATTCTCCTTCCTCAGCCTCCCGAGTAGCTGGGATTACAG___GTTCAAGAGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGCACTGCAGACACGCACCACCACACCCAG|CTCACCTATGACCATATAATGAAGGGGCTCTTATCCCATTTGAAGCTGAGGAAATAAAGGTTTGGAA...GACTTTGCTGAACTTCAGTTCTTCACTGTCATTTCGACGGCTTATATTCAGAAGCTTCCCTCCAGGCTAAGAAATCATCAGAAGGTGGCCAAAC...CACAGAATTACATTTTTATACCTCTTTGAAGTGAG___GCTGAAGTGCAATGGCGTGATCTCGGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGTGATTCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13801 FAM53A::NELFA ENSG00000174137.14::ENSG00000185049.16 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM53A ENSG00000174137.14 protein_coding - - chr4:1617915-1684313:- chr4:1654978:- chr4:1619642-1686040:- chr4:1656705:- NELFA ENSG00000185049.16 protein_coding - - chr4:1982717-2041903:- chr4:1984919:- chr4:1984444-2043630:- chr4:1986646:- chr4:1638639,chr4:1638653 chr4:1985353,chr4:1985364 NA NA chr4:1640366,chr4:1640380 chr4:1987080,chr4:1987091 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Family_of_FAM53(100%)| FAM53(100%)| 0 2 2 12 427 ENST00000308132.11 ENST00000542778.5 upstream downstream duplicates(1),mismatches(1) GCGACTCGCGGGTGCGGGCACTCCCCTGCCCTGGGCCAGCAGCAGCCCCACGTCCACGCCTGCGCTGGGCGGGCGCCGTGGGCTGCTCCGGTGCCGCTCACAGCCgTGCGTGCTCAGTGGGAAGAGGAGCCGGCGCAAACGGAGGCGTGAGGAGGACGCCAGGTGGACACGCCCATCCTTGGACTTCCTGAAAATGACCCAG|AAACTTGGGTCCCTGAACAATGAGCCTGCGCTGCCCTCCACGAGCTACCTTCCCTCCACGCCCAGCGTGGTTCCCGCCTCCTCCTACATCCCCAGCTCCGAGACGCCCCCAG___CCCCATCTTCCCGGGAAGCCAGCCGCCCACCAGAGGAGCCCAGCGCCCCGAGCCCCACGTTGCCAGCGCAGTTCAAGCAGCGGGCGCCCATGTACAACAGCGGCCTGAGCCCTGCCACACCCACGCC RLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQ|KLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPEEPSAPSPTLPAQFKQRAPMYNSGLSPATPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13802 EBAG9::CASC8 ENSG00000147654.16::ENSG00000246228.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EBAG9 ENSG00000147654.16 protein_coding + + chr8:109539711-109570072:+ chr8:109540461:+ chr8:110551940-110582301:+ chr8:110552690:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:109545610,chr8:109545599,chr8:109545611 chr8:127336533,chr8:127336534,chr8:127336523 NA NA chr8:110557839,chr8:110557828,chr8:110557840 chr8:128348778,chr8:128348779,chr8:128348768 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 1 2 69 63 ENST00000337573.10 ENST00000501396.5 downstream downstream duplicates(2) CGCCTTCCTCAGGGAAATTTGCGTGACCTTACTGCCCTCCGTCTACAGGCCTTGTACCTCTCCAGGCCGATTTTTCCACAATTTAAATCcCAGTTCACCTGGTATCCAGCTCCAGCAACTTAGAGCGTTTCACGTCACGCCGGGCGCCAGGCGTCGGCTTGTATAACCTGAAAACGCTCCTGTTTTTCTCATCTGTGCAGTGG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13804 OXR1::PTK2 ENSG00000164830.19::ENSG00000169398.20 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2432 TRUE 943 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106519139:+ chr8:107282372-107764922:+ chr8:107531367:+ PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140925749:- chr8:141667999-142012315:- chr8:141935848:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |FERM_N-terminal_domain(100%),FERM_central_domain(100%),Focal_adhesion_targeting_region(100%),Protein_kinase_domain(100%) |FERM_M(100%),FERM_N_2(100%),Focal_AT(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 2 260 312 ENST00000517566.7 ENST00000696786.1 downstream downstream duplicates(1) AAAAGTCCCAGTCGGTGGATATTAATGCTCCAGGGTTCAACCCTTTGGCTGGTGCAGGAAAGCAAACACCACAAGCCAGTAAGCCCCCGGCACCCAAGACCCCCATCATTGAAGAAGAGCAGAACAATGCAGCAAATACTCAGAAACATCCTTCCAGAAGGAGCGAACTGAAGAGGTTCTACACAATTG|GCAGAACTGGGGCTCCCTTGCATCTTCCAGTTACAAATTCAGTGCCTTCTGCAGTTTCCCCAGAGCTCCTCAAGAATAACGGAAGGGAG___AATATGACAGATACCTAGCATCTAGCAAAATAATGGCAGCTGCTTACCTTGACCCCAACTTGAATCACAC KSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTI|grtgaplhlpvtnsvpsavspellknngrenmtdt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13805 OXR1::PTK2 ENSG00000164830.19::ENSG00000169398.20 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2432 TRUE 943 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106519139:+ chr8:107282372-107764922:+ chr8:107531367:+ PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140948723:- chr8:141667999-142012315:- chr8:141958822:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |FERM_N-terminal_domain(100%),FERM_central_domain(100%),Focal_adhesion_targeting_region(100%),Protein_kinase_domain(100%) |FERM_M(100%),FERM_N_2(100%),Focal_AT(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 2 260 69 ENST00000517566.7 ENST00000696786.1 downstream downstream none AAAAGTCCCAGTCGGTGGATATTAATGCTCCAGGGTTCAACCCTTTGGCTGGTGCAGGAAAGCAAACACCACAAGCCAGTAAGCCCCCGGCACCCAAGACCCCCATCATTGAAGAAGAGCAGAACAATGCAGCAAATACTCAGAAACATCCTTCCAGAAGGAGCGAACTGAAGAGGTTCTACACAATTG|ATCCATGGTTGGTT...GGATGTGGAACCCGCTGACGTGGATGGCTGACTGTATT___GTGAAGAGCGATTATATGTTAGAGATAGCTGATCAAGTGGACCAGGAAATTGCTTTGAAGTTG KSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTI|dpwl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13806 OXR1::PTK2 ENSG00000164830.19::ENSG00000169398.20 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2432 TRUE 943 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106519139:+ chr8:107282372-107764922:+ chr8:107531367:+ PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140864399:- chr8:141667999-142012315:- chr8:141874498:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |FERM_N-terminal_domain(9%),FERM_central_domain(100%),Focal_adhesion_targeting_region(100%),Protein_kinase_domain(100%) |FERM_M(100%),FERM_N_2(40%),Focal_AT(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 0 0 260 462 ENST00000517566.7 ENST00000696786.1 downstream downstream low_entropy(1) CATCATTGAAGAAGAGCAGAACAATGCAGCAAATACTCAGAAACATCCTTCCAGAAGGAGCGAACTGAAGAGGTTCTACACAATTG|ATATGAATTGAGAATTCGTTATTTGCCAAAAGGATTTCTAAACCAGTTTACTGAAGATAAGCCAACTTTGAATTTCTTCTATCAACAGG IIEEEQNNAANTQKHPSRRSELKRFYTI|dmn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13807 KCNN3::TAF12 ENSG00000143603.19::ENSG00000120656.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KCNN3 ENSG00000143603.19 protein_coding - - chr1:154697455-154870281:- chr1:154725916:- chr1:154669931-154842757:- chr1:154698392:- TAF12 ENSG00000120656.14 protein_coding - - chr1:28587829-28648291:- chr1:28622165:- chr1:28914341-28974803:- chr1:28948677:- chr1:154715890,chr1:154715903 chr1:28633239,chr1:28633249 NA NA chr1:154688366,chr1:154688379 chr1:28959751,chr1:28959761 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Calcium-activated_SK_potassium_channel(100%),Calmodulin_binding_domain(9%),Ion_channel(100%)|Transcription_initiation_factor_TFIID_subunit_A(100%) CaMBD(0%),Ion_trans_2(100%),SK_channel(100%)|Arf(100%),CBFD_NFYB_HMF(100%),Ras(100%),Roc(100%),TFIID_20kDa(100%) 1 2 0 4 185 ENST00000271915.9 ENST00000495422.2 upstream downstream duplicates(1) GCAGGCTGCACTGCCCTTGTGGTGGCCGTGGTGGCCCGAAAGCTGGAACTCACCAAAGCGGAGAAGCACGTTCATAACTTCATGATGGACACTCAGCTCACCAAGCGG|TTAATTGGCCTTGGTCCTCACAGCTCCAAAAAGAAACAGGATCTCGATAAGCTCTATGAGCTGAAGTCCAAAGCTCGGCAGATTATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATCCATAAAACCGGAACCAGCCAGCACCCCTCCACAAGGCTCCATGGCCAATAGTACTGCAGTGGTAAAGATACCAG AGCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKR|LIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13808 CNGB3::LINC02839 ENSG00000170289.13::ENSG00000254123.2 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86643751:- chr8:87566205-87755903:- chr8:87655979:- LINC02839 ENSG00000254123.2 lncRNA - - chr8:82098451-82160577:- chr8:82108713:- chr8:83010686-83072812:- chr8:83020948:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 1 1 1 4 1 ENST00000681746.1 ENST00000654599.1 upstream downstream none GTTGGATGTCGCATCAATAATACCATTTGATATTTGCTACCTCTTCTTTGGGTTTAATCCAATGTTTAGAGCAAATAGGATGTTAAAG___TACACTTCATTTT...GTTTATTCTGCACATTAATGCCTGTGTTTATTACTGGGCTTCAAACTATGAAGGAATTGGCACTACTAGATGGGTGTATGATGGGGAAGGAAACGA|GCTCCCCTGTTTCTCAGGCCTCCAGACTGAAG...TGAATTATACCACCAGCTCTCCTCAGTCTCCAGTTTGCAGACAACAGATCATGGGACTTCTCAGCCTCCATAATCACAGGAGTCAATTCCTCATAATAAATCTGTC FILHINACVYYWASNYEGIGTTRWVYDGEGNe|lpcfsglqte NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13819 KCNQ3::POU5F1B ENSG00000184156.18::ENSG00000212993.6 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2433 FALSE NA KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127414888:+ chr8:128334428-128432311:+ chr8:128427133:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none Ion_transport_protein(34%)|Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) Ion_trans(96%)|Homeodomain(100%),Pou(100%) 1 0 1 199 78 ENST00000388996.10 ENST00000645438.1 upstream upstream none CCTGACCACATTCAAGGAGTATGAGACTGTCTCGGGAGACTGGCTTCTGTTACTG___GAGACATTTGCTATTTTCATCTTTGGAGCCGAGTTTGCTTTGAGGATCTGGGCTGCTGGATGTTGCTGCCGATACAAAGGCTGGCGGGGCCGACTGAAGTTTGCCAGGAAGCCCCTGTGCATGTTGG|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGC...AACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTCCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTAGCATCATGGTATGGCAG LTTFKEYETVSGDWLLLLETFAIFIFGAEFALRIWAAGCCCRYKGWRGRLKFARKPLCML|ghslwvnpadml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13824 RELT::FCHSD2 ENSG00000054967.13::ENSG00000137478.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RELT ENSG00000054967.13 protein_coding + + chr11:73376399-73397474:+ chr11:73376499:+ chr11:73087444-73108519:+ chr11:73087544:+ FCHSD2 ENSG00000137478.15 protein_coding - + chr11:72836745-73142318:- chr11:73097027:+ chr11:72547790-72853363:- chr11:72808072:+ chr11:73381137,chr11:73381120,chr11:73381133 chr11:73079886,chr11:73079881,chr11:73079879 NA NA chr11:73092182,chr11:73092165,chr11:73092178 chr11:72790931,chr11:72790926,chr11:72790924 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 0 10 0 87 12 ENST00000064780.7 unknown downstream upstream mismatches(1) CGCGGCTGTCCGGGCGCTCGCCGAGCCGGGCCGCGGCGCCGAGTCGAACGGGGAGCCGAGCTGGAGCTGCCGCGGCGCAGCCAG|GGTCTCACTCTGGTCATCCAAGCTGGAGTATAGTGGCACAATCTCAGCTCACTGCAGCCTCGACCTCCCAGGCTCAAGCAATCCTCCCACCTCAGCCTCCCAAATAGCTgGAACTACAG___...GTGCCCAGCTCTTCTTCTAATCTAAG___ATAAGGAAGCTAAGAAGACACAGACGGGTTAAGTAACCAAGTTTGGACAAGCAGGAAGTGGAGAACTAAGAATTCACAATCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13830 CGNL1::TCF12 ENSG00000128849.11::ENSG00000140262.18 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2434 FALSE NA CGNL1 ENSG00000128849.11 protein_coding + + chr15:57375967-57550717:+ chr15:57376567:+ chr15:57668165-57842915:+ chr15:57668765:+ TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57166402:+ chr15:57210821-57591479:+ chr15:57458600:+ chr15:57439076,chr15:57439074 chr15:57161867,chr15:57161862 NA NA chr15:57731274,chr15:57731272 chr15:57454065,chr15:57454060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Helix-loop-helix_DNA-binding_domain(100%) |HLH(100%) 0 1 0 91 170 ENST00000281282.6 ENST00000267811.9 downstream upstream duplicates(1),mismatches(1) GCTGCGGCGGGAGCTGGACGCGGGAGGAGGCGGCGGCGGCG|GAAAAACATCAGAGAGAGGCTCATTTTCCCTGTACAGCAGAGATACTGGATTACCAGGCTGTCAA___TCTAGgCTCCTGA...GCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAcCCTGGGACAGCATACaATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTG...AAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCT___GTATATGCACCATCCCCAAATTCAGATGATTTCAACCGTGAATCTCCTAGTTATCCATCTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 57754090 FALSE 57578355 FALSE PARTIALLY CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation 13834 USP25::ENSG00000229425 ENSG00000155313.16::ENSG00000229425.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP25 ENSG00000155313.16 protein_coding + + chr21:15729982-15880064:+ chr21:15730438:+ chr21:17102301-17252383:+ chr21:17102757:+ ENSG00000229425 ENSG00000229425.5 lncRNA - + chr21:15368966-15627342:- chr21:15499886:+ chr21:16741285-16999661:- chr21:16872205:+ chr21:15753954,chr21:15753953 chr21:15485143,chr21:15485139 NA NA chr21:17126273,chr21:17126272 chr21:16857462,chr21:16857458 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 0 5 0 4 37 ENST00000400183.7 unknown downstream upstream none CCGCCGCCGCGGGGGCCATGACCGTGGAGCAGAACGTGCTGCAGCAGAGCGCGGCGCAGAAG|GGAGCAGAAGATAAAGGGTAGCCTGAGACGGAAATCTAAGAATCAGAAGTTGGAAACTGTTACCCATGTTTAAGGCTTGACAATCAAGACCAAGAGGCAGAACTGGGGCATGCAGCAGCTGAGGACAAAGTAGTTCCCAGAGCTGTAGAATGCATTGAGGCCAAATCAGTGGACACGTGCAACCAGCCACAATCTAAAGTGAGAAGATCGATAGAGGAGAGAG___CAAGAAGGTTCTCACCAGATGTGGC...AGGGACAAAGAGCATCATCCAAAAGGCCAAATAAATAgCAGCCATGGGAAACAATAAGGAATTCAGAAATGGAAGATTTGCATAAAAACAGAAATTAAAC MTVEQNVLQQSAAQK|gaedkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13835 UHRF1::PIAS4 ENSG00000276043.5::ENSG00000105229.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4932956:+ chr19:4903092-4962165:+ chr19:4932968:+ PIAS4 ENSG00000105229.7 protein_coding + + chr19:4007736-4039386:+ chr19:4037374:+ chr19:4007734-4039384:+ chr19:4037372:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Tandem_tudor_domain_within_UHRF1(85%),Ubiquitin_family(100%)| TTD(28%),ubiquitin(100%)| 2 1 2 558 378 ENST00000612630.4 ENST00000262971.3 downstream upstream none GCTGTACAAG___GTCAATGAGTACGTCGATGCTCGGGACACGAACATGGGGGCGTGGTTTGAGGCGCAGGTGGTCAGGGTGACGCGGAAGGCCCCCTCCCGGG...CGCACCATCATCAAGTGGCAGGACCTGGAGGTGGGCCAGGTGGTCATGCTCAACTACAACCCCGACAACCCCAAGGAGCGGGGCTTCTGGTACGACGCGGAGATCTCCAGGAAGCGCGAGACCAGGACGGCGCGGGAACTCTACGCCAACGTGGTGCTGGG|GCTCCTCTCGAAGATCCTGAGCGAGTGTGAGGACGCCGACGAGATCGAGTACCTGGTGGACGGCTCGTGGTGCCCGATCCGCGCCGAAAAGGAGCGCAGCTGCAGCCCGCAGGGCGCCATCCTCGTGCTGG___GCCCCTCGGACGCCAATGGGCTCCTGCCCGCCCCCAGCGTCAACGGGAGCGGTGCCCTGGGCAGCACGGGTGGCGG RTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLg|LLSKILSECEDADEIEYLVDGSWCPIRAEKERSCSPQGAILVLGPSDANGLLPAPSVNGSGALGSTGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4747 chr19:4932687-4932740:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13838 NCALD::RRM2B ENSG00000104490.18::ENSG00000048392.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NCALD ENSG00000104490.18 protein_coding - - chr8:101686542-102124907:- chr8:102020237:- chr8:102698770-103137135:- chr8:103032465:- RRM2B ENSG00000048392.13 protein_coding - - chr8:102204502-102238961:- chr8:102218947:- chr8:103216730-103251189:- chr8:103231175:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Ribonucleotide_reductase__small_chain(46%) |Ribonuc_red_sm(34%) 0 1 3 382 611 ENST00000395923.5 ENST00000251810.8 upstream downstream none CAGGGACCCCAGACCCCCCCTCAAATCGAAGCTTGGAAGGAGGTGCTCTAGGCTGAATCTGACCTCCCAGGACCCGAGGAG___AGTGATTTCTTCTGACTTGAGCCTGCAGTGTGCTGTGAGAGATCTACCACTAG|GGGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAGTTTTCTTCTCAGGATCTTTTGCTGCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGAGATGAAGgAAGGAATGGAATGTTTTTCTAGTTATATTTGTATTCATATTTGATGTTCATCTATTTTTCTTTTCCATCTTTTTTTTTTTTT----GAGACAGGATCTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13841 SCAF8::ENSG00000288520 ENSG00000213079.10::ENSG00000288520.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCAF8 ENSG00000213079.10 protein_coding + + chr6:154733378-154834244:+ chr6:154733930:+ chr6:155054512-155155378:+ chr6:155055064:+ ENSG00000288520 ENSG00000288520.1 protein_coding - + chr6:154159828-154510114:- chr6:154408963:+ chr6:154480963-154831248:- chr6:154730097:+ chr6:154768669,chr6:154768667 chr6:154395111,chr6:154395106 NA NA chr6:155089803,chr6:155089801 chr6:154716245,chr6:154716240 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none CID_domain(3%)| CID(0%)| 0 2 2 268 48 ENST00000367178.8 unknown downstream upstream duplicates(1),mismatches(1) CGGCAGCGCCTCTGTTCCCTAGAACGGCGCTCCCCCCGCCCTAGCGGCCATGCCGGTGCCGCTCTGCCGCTGAGGGAGCCCTTCCCCGCCAGCGCGTGCCC...CCGCTCTCCCGCCAGCGCCCCCTCCTCGCGGCCACGCAGCAGCCCGCGTCTCGCTCTCCtCACCCAGTGCAGTGGCCGCCGCCTCTTCCGCCGCCGGGCTCGGGGCCTCCGCAGCGACAACATGGAGGCCGTGAAGACCTTCAATAGCGAG|GCTCAACCCTGGCTCAGATGAACGGCAAGGAAGATGTTAACGTGTCTAAATCTAAACAACGGACAGCCCTGCCACCTGCTGACTGCTCCATGGATACTCACACGTTAACTAAGGGGATCCTGAATG___AATGTTGGTTTCCACCGAGTACCCAGGCAACTGATCCGAGTCTGCAATGGTGAATCTTCGTCTCCGGCTTTCC MEAVKTFNSE|aqpwlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13846 HECTD4::LINC02449 ENSG00000173064.14::ENSG00000215241.4 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112283110:- chr12:112597992-112820243:- chr12:112720914:- LINC02449 ENSG00000215241.4 lncRNA + + chr12:8235415-8242564:+ chr12:8242362:+ chr12:8388011-8395160:+ chr12:8394958:+ chr12:112282740,chr12:112282742 chr12:8239861,chr12:8239859 NA NA chr12:112720544,chr12:112720546 chr12:8392457,chr12:8392455 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 3 0 194 5 ENST00000377560.9 ENST00000536034.1 upstream upstream duplicates(2) CCCGTCAGCAACGCTTGCTGCCCTGACTGGTTCCACCATCTCCAACACACTGAAAGAGGATCAAGCAG|GTGTGAAAGCCTCAGCGCATGAGCCAATTCTGTGCAGTGCTCGACATACAGATGAGAACACTGAGGCACGAGGCACAGCCTGTGATCTGGCCACCGCGCTCAGGAGGAGGTGGTTACCCGCGGGCCTGAGGGCGCTGACTTTTTAGAATGGGCGAGTGCAG PSATLAALTGSTISNTLKEDQA|gvkasahepilcsarhtdenteargtacdlatalrrrwlpaglraltf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13847 INPP5B::GRIK3 ENSG00000204084.14::ENSG00000163873.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37931915:- chr1:38326369-38412725:- chr1:38397587:- GRIK3 ENSG00000163873.10 protein_coding - + chr1:36795527-37034515:- chr1:36801526:+ chr1:37261128-37500116:- chr1:37267127:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site 3'UTR inversion/5'-5' medium none Type_II_inositol_1_4_5-trisphosphate_5-phosphatase_PH_domain(100%)| INPP5B_PH(100%)| 1 1 1 51 294 ENST00000373024.8 unknown upstream upstream none GTCCAGCTGGACACAGCAGAGCTTAGCCTCGTATTCCAACTGCCCTTTGGTTCACAAACCAGGATGTTCCTCCACGAAGTTGCCAGGGCCTGTCCAG___GCTTCG...CGCGGTTGTAACTCGGCCCTAGTTACCTGGCCAGGGTACGCGACAATTGGCGG|AGGGCTGCGGCAGAAACTTCTGACTCTGGAGGAGAGTTGAGGGGCAGGTGAGTTTGGCCT--GAGAGGCATGTGCTTCCTTTGGCCTTGGCTATCTCGGCTGGCAGCTTTAGAAACCCACAGAAGATCTGAGGAGGATGAAGCCCAAGCAGCTGGCCTGAGAGCCTGCTGGCTTCCTGGCAGGTAAG RGCNSALVTWPGYATIGg|glrqklltlees* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13849 PCAT1::ENSG00000253427 ENSG00000253438.5::ENSG00000253427.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589290:+ chr8:127568568-128431295:+ chr8:127601535:+ ENSG00000253427 ENSG00000253427.1 lncRNA + + chr8:126474189-126492596:+ chr8:126492365:+ chr8:127486434-127504841:+ chr8:127504610:+ chr8:126613515,chr8:126613516 chr8:126488205,chr8:126488203 NA NA chr8:127625760,chr8:127625761 chr8:127500450,chr8:127500448 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 2 15 2 ENST00000519880.5 ENST00000520171.1 downstream upstream duplicates(2) CTCCTCCCCACCAACGCATCCATCCCCAGAGGAACAAGCGAGGATCTCAGAGCGCGACCTGGACAG___GCTCTCACAAAAGTCACCGCGTTTGTGTAGGTAACTAAGGCCTACCGAAACCAGTCAGCCCTAAGTGCACACAGGAGAACCATGGAGTTGGAGGAAAAG|GGTATACTATAATCTTCCTGGAATAAGAATATGGATTACACAAAGTTTATACTCAATAAATACTTGAGAAGGGAAGAAAGGGACTAAGGGAGGAGAGAAGAGAAAGAGGAGGAAAAAGAAGAAAATAGGTTTAAAGGAAAGAAAGGAAGAGATGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13865 PIPOX::SUPT6H ENSG00000179761.12::ENSG00000109111.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2438 TRUE 944 PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:29000323:+ chr17:27277531-27384234:+ chr17:27327341:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28696901:+ chr17:26989216-27029697:+ chr17:27023919:+ chr17:29000562,chr17:29000561 chr17:28696823,chr17:28696819 NA NA chr17:27327580,chr17:27327579 chr17:27023841,chr17:27023837 NA NA sense sense unknown intron CDS duplication low none |SH2_domain(79%) CUB(100%),Sushi(100%)|SH2(97%),SH2_2(67%) 0 0 3 1 613 unknown ENST00000314616.11 downstream upstream none GTCTGGTGGTTTGGGCAGCAG___TGAAGCTCTCCCCTATGCCGGGAAAGTGGACATAGTGCTAGCTGAAGCCAGGTTTTGTGAAATGGGCAGACACTTTGGAGTAGCCTTACTACTTACTGGCTGTACA...|...CAGAAAAGATGATGGAGACCATGGACCAGGGTGATGTGATTATCCGACCAAGCAGCAAGGGCGAGAACCACCTGACAGTGACCTGGAAAGTCAGTGATGGC...CCAGCATGTGGATGgGCGGGAGGAGGGCAAGGAAAATGCCTTCAGCCTGGGAGCCACTCTGTGGATCAACAGTGAG___GAATTCGAAGATTTGGATGAGATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13866 PIPOX::SUPT6H ENSG00000179761.12::ENSG00000109111.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2438 TRUE 944 PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:28953408:+ chr17:27277531-27384234:+ chr17:27280426:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28696844:+ chr17:26989216-27029697:+ chr17:27023862:+ chr17:29000562,chr17:29000561 chr17:28696823,chr17:28696819 NA NA chr17:27327580,chr17:27327579 chr17:27023841,chr17:27023837 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |SH2_domain(88%) |SH2(100%),SH2_2(68%) 0 2 0 8 528 ENST00000580241.5 ENST00000314616.11 downstream upstream duplicates(1) CCCAGCTGTGCTGCTGTGTTAACCTGGAGGCATTATGGAACAG|CATACATCAAGAGAGTGATCGCACACCCATCCTTCCATAATATCAATTTCAAGCAAGCAGAAAAGATGATGGAGACCATGGACCAGGGTGATGTGATTATCCGACCAAGCAGCAAGGGCGAGAACCACCTGACAGTGACCTGGAAAGTCAGTGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13867 RGPD6::BUB1 ENSG00000183054.13::ENSG00000169679.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RGPD6 ENSG00000183054.13 protein_coding - - chr2:110513802-110610840:- chr2:110610715:- chr2:111271379-111368417:- chr2:111368292:- BUB1 ENSG00000169679.15 protein_coding - - chr2:110637528-110678063:- chr2:110661841:- chr2:111395105-111435640:- chr2:111419418:- chr2:110606693,chr2:110606696 chr2:110664125,chr2:110664125 NA NA chr2:111364270,chr2:111364273 chr2:111421702,chr2:111421702 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 2 0 6 542 ENST00000696448.1 ENST00000302759.11 upstream downstream none GGCAGCGGCGGCgGCGGCGGCGGCGACGCTGACACCTCCCACCATGGACAGCTTCGACTTAGCCCTGCTCCAGGAATGGGACCTCGAGTCACTGTG|GTTAATCCAGCACGTATGGGGCCAAGTGTAGGCTCCCAGCAGGAACTGAGAGCGCCATGTCTTCCAGTAACC...GAGAGGCACCTCCTGTTGTTCCTCCTTTGGCAAATGCTATTTCTGCAGCTTTGGTGTCCCCAGCCACCAGCCAGAGCATTGCTCCTCCTGTTCCTTTGAAAaCCCAGACAGTAACAGACTCCATGTTTGCAGTGGCCAGCAAAGATGCTGG___ATGTGTGAATAAGAGTACTCATGAATTCAAGCCACAGAGTGGAG MGPRVTV|VNPARMGPSVGSQQELRAPCLPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitotic checkpoint serine/threonine-protein kinase BUB1 Other BUB O43683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13868 TSPAN4::MOB2 ENSG00000214063.12::ENSG00000182208.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TSPAN4 ENSG00000214063.12 protein_coding + + chr11:842812-867116:+ chr11:864865:+ chr11:842812-867116:+ chr11:864865:+ MOB2 ENSG00000182208.15 protein_coding - + chr11:1469457-1501247:- chr11:1489667:+ chr11:1490687-1522477:- chr11:1510897:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/5'-5' low none Tetraspanin_family(46%)| Tetraspanin(89%)| 0 0 2 8 8 ENST00000464987.5 unknown downstream upstream mismappers(2) CACGGGCgGCCAGGACAGCGGGTGTGGATTTACCAGGCCTGGAGGGGCAGCGCCAGCGACCCTGGGAGGCTGTGCTGTGGCTCTATAGCGACTGGGGCACAAGGGCACTGCTACCCCACCCGGAGGGTGCGCCCCAGGTTGTCCCCCGCCCTCTGACGCAGCGTCCTGAGCCGTCTGCTCCCAGCGCCCCATCCGGGCCGCGCACCGTGGGGTTCTgCTCTGTAGAGCGGCCTCTTCTTGGTCACTC...|...TATATTCAGCCATTTGTTTATATTGGGATGAAGTCCTGGCTATTGAGGtTGCACTCCGAGCTAGAACACAACACTACTTTGTTTTGTGAATCACACTGTCCGTCCTTGGCCCTGGGGAGCTtCTGCCgTCtGCTGCTGGGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13871 ADGRL3::ITSN1 ENSG00000150471.17::ENSG00000205726.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61201765:+ chr4:62066044-62944053:+ chr4:62067483:+ ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33718797:+ chr21:35014706-35272165:+ chr21:35091102:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation low none |C2_domain(100%),Cytoskeletal-regulatory_complex_EF_hand(100%),Intersectin_and_clathrin_adaptor_AP2_binding_region(100%),Pleckstrin_homology_domain(100%),RhoGEF_domain(100%),SH3_domain(100%),Variant_SH3_domain(100%) |C2(100%),EF-hand_4(100%),EF-hand_5(100%),INTAP(100%),PH_13(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 0 1 4 143 ENST00000683033.1 ENST00000381318.8 downstream upstream duplicates(1) CACAGGGGCCGGCCGGTCTTTTGCCCCGGGCTCAATGGCTGGATTGTGGAAACTGCACCCGCCTTCAGGTTGTTGAGCAACTGATGGGACGATCTCAGGGACCGGCGTTTACGAAAG|GCGTCGATTAGCAAGGTAAAAGTAACAGAACCATGGCTCAGTTTCCAACACCTTTTGGTG___GCAGCCTGGATATCTGGGCCATAACTGTAGAGGAAAGAGCGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13873 SPIRE2::LINC01630 ENSG00000204991.11::ENSG00000227115.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPIRE2 ENSG00000204991.11 protein_coding + + chr16:89818179-89871319:+ chr16:89828794:+ chr16:89884587-89937727:+ chr16:89895202:+ LINC01630 ENSG00000227115.10 lncRNA + + chr18:51346249-51643939:+ chr18:51633449:+ chr18:48872619-49170309:+ chr18:49159819:+ chr16:89838531 chr18:51603607 NA NA chr16:89904939 chr18:49129977 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Kinase_non-catalytic_C-lobe_domain(32%)| KIND(0%)| 1 1 0 74 1 ENST00000378247.8 ENST00000635680.1 downstream upstream none AGCAGGCGTGGGCCGTGTGCTTCCAGGGCTGCCGCGGGCTGCGGGGCTCGCCGGGCCGGCGCCTGCGGGATACCGGGGACCTCCTGCTGCGCGGGGACGGCTCGGTCGGGGCGCGGGAGCCCGAGGCCGCGG|GCTGGAGTGCAATGGCAAGATCTTGGCTCACTGAAACCTCTGCCTCCTGGATTCgAG...CTGGGATTACAG___ATTTCTGATAACTTTGGAGATTGTGACAGCAGAATAGAGGGAAAACTTTCTGTAATCATGGAGAGCCGAAATATTCATGAATATCAcGC QAWAVCFQGCRGLRGSPGRRLRDTGDLLLRGDGSVGAREPEAA|gwsamarswltetsaswir NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13885 CRTC3-AS1::KCNJ6 ENSG00000259736.1::ENSG00000157542.11 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRTC3-AS1 ENSG00000259736.1 lncRNA - - chr15:90620007-90717141:- chr15:90713167:- chr15:91163239-91260372:- chr15:91256398:- KCNJ6 ENSG00000157542.11 protein_coding - - chr21:37607373-38121345:- chr21:37715131:- chr21:38979675-39493439:- chr21:39087434:- chr15:90661064,chr15:90661066 chr21:37753631,chr21:37753630 NA NA chr15:91204295,chr15:91204297 chr21:39125934,chr21:39125933 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Inward_rectifier_potassium_channel_C-terminal_domain(100%),Inward_rectifier_potassium_channel_transmembrane_domain(100%) |IRK(100%),IRK_C(100%) 0 1 1 20 22 ENST00000559531.1 ENST00000645093.1 upstream downstream none GACAAAAGCAATAAGATGATTAAGGCCATGTGAGACAGCAACAATATCAG|CTAACGTCCTGGAGGGCGACTCCATGGATCAGGACGTCGAAAGCCCAGTGG...GATGACCTGCCAAGACACATCAGCCGAGATCGGACCAAAAGGAAAATCCAGAGGTACGTGAGGAAAGACGGAAAGTGCAATGTTCATCACGGCAACGTGAGGGAGACCTATCGCTACCTGACCGATATCTTCACCACATTAGTGGACCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13897 G2E3::PRKD1 ENSG00000092140.16::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA G2E3 ENSG00000092140.16 protein_coding + + chr14:30559158-30620064:+ chr14:30559272:+ chr14:31028364-31089270:+ chr14:31028478:+ PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:30133952:+ chr14:30045685-30661104:- chr14:30603158:+ chr14:30592448,chr14:30562915,chr14:30562914,chr14:30562914 chr14:29586757,chr14:30115595,chr14:30115597,chr14:30115600 NA NA chr14:31061654,chr14:31032121,chr14:31032120,chr14:31032120 chr14:30055963,chr14:30584801,chr14:30584803,chr14:30584806 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 25 72 34 780 128 ENST00000206595.11 unknown downstream upstream duplicates(12),low_entropy(1),mismappers(1),mismatches(7) GGGCCGTTGAATGTGGCTGCTCGCGGTCGGCGTGCCCCGACGTACAGCGGGCCGGGAAAAGTGGCACTGAGGCTCTGGAACTTCTGCCCAGCTCTCCTTG|AATTTGTACAAGACACACTCGATATTTCAGGGAGACAAAAAGCTCACCTATCCAAATAAAACCTCTCAG___ATGGAAAGAGTTCTTGATACTTCCCAGCAGGGTGATTAAGAGAACGGACAGTCAACAGACAGATTTGGGTTTGAATCCAAACTCCCGTGAAATATGTAACCTTCGGCAAATTACTTAACTGCTCTGAGTCTTTGAAGAAGGAGAATACTATGTACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13898 G2E3::ENSG00000248975 ENSG00000092140.16::ENSG00000248975.2 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2440 FALSE NA G2E3 ENSG00000092140.16 protein_coding + + chr14:30559158-30620064:+ chr14:30559272:+ chr14:31028364-31089270:+ chr14:31028478:+ ENSG00000248975 ENSG00000248975.2 lncRNA - + chr14:29952397-30297043:- chr14:30133952:+ chr14:30421603-30766249:- chr14:30603158:+ chr14:30562914,chr14:30562914,chr14:30562915 chr14:30115597,chr14:30115600,chr14:30115595 NA NA chr14:31032120,chr14:31032120,chr14:31032121 chr14:30584803,chr14:30584806,chr14:30584801 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 25 72 34 780 128 ENST00000206595.11 unknown downstream upstream duplicates(12),low_entropy(1),mismappers(1),mismatches(7) GGGCCGTTGAATGTGGCTGCTCGCGGTCGGCGTGCCCCGACGTACAGCGGGCCGGGAAAAGTGGCACTGAGGCTCTGGAACTTCTGCCCAGCTCTCCTTG|AATTTGTACAAGACACACTCGATATTTCAGGGAGACAAAAAGCTCACCTATCCAAATAAAACCTCTCAG___ATGGAAAGAGTTCTTGATACTTCCCAGCAGGGTGATTAAGAGAACGGACAGTCAACAGACAGATTTGGGTTTGAATCCAAACTCCCGTGAAATATGTAACCTTCGGCAAATTACTTAACTGCTCTGAGTCTTTGAAGAAGGAGAATACTATGTACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13900 RAF1::MKRN2OS ENSG00000132155.14::ENSG00000225526.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2441 TRUE 945 RAF1 ENSG00000132155.14 protein_coding - - chr3:12582101-12664201:- chr3:12663813:- chr3:12623600-12705700:- chr3:12705312:- MKRN2OS ENSG00000225526.6 protein_coding - - chr3:12514934-12561059:- chr3:12554134:- chr3:12556433-12602558:- chr3:12595633:- chr3:12648347,chr3:12648352 chr3:12556122,chr3:12556124 NA NA chr3:12689846,chr3:12689851 chr3:12597621,chr3:12597623 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through high none |Domain_of_unknown_function_(DUF4796)(100%) |DUF4796(100%),tRNA_int_endo(100%),tRNA_int_endo_N(100%) 14 9 47 176 48 ENST00000688543.1 ENST00000447550.1 upstream downstream duplicates(2),inconsistently_clipped(1),mismatches(17) TGGGCCGCCATCTTAGATGGCGGGAGTAAGAGGAAAACGATTGTGAGGCGGGAACGGCTTTCTGCTGCCTTTTTTGGGCCCCGAAAAGGGTCAGCTGGCCGGGCTTTGGGGCGCGTGCCCTGAGGCGCGGAGCGCGTTTGCTACGATGCGGGGGCTGCTCGGGGCTCCGTCCCCTGGGCTGGGGACGCGCCGAATGTGACCGCCTCCCGCTCCCTCACCCGCCGCGGGGAGGAGGAGCGGGCGAGAAGCTGCCGCCGAACGACAGGACGTTGGGGCGGCCTGGCTCCCTCAG|GAAAAGCAACTTTGCTACCAAACACTCGGGAGAAAAAGGCTATCAGATAGAAGCGGGTGAAGAAGCTGAGAAAACAGAAGAGAAGGGTGGCTGCCAGCTCGGGACTCAAAATGGCCATCTGGGCGTAGAGACACAGAGACCCTTTGCGCAGACGTGCGCCGAGGGTCTTGCAAAGCTTTCGTTTTCTTTGTGTGCCGACCTGCCCCTAGAAGCGGTTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAF proto-oncogene serine/threonine-protein kinase TKL RAF P04049 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf-1 murine leukemia viral oncogene homolog 1 1 Yes pilocytic astrocytoma, prostate other, epithelial oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 13901 RAF1::MKRN2OS ENSG00000132155.14::ENSG00000225526.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2441 TRUE 945 RAF1 ENSG00000132155.14 protein_coding - - chr3:12582101-12664201:- chr3:12663813:- chr3:12623600-12705700:- chr3:12705312:- MKRN2OS ENSG00000225526.6 protein_coding - - chr3:12514934-12561059:- chr3:12543229:- chr3:12556433-12602558:- chr3:12584728:- chr3:12648347,chr3:12648352 chr3:12556122,chr3:12556124 NA NA chr3:12689846,chr3:12689851 chr3:12597621,chr3:12597623 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Domain_of_unknown_function_(DUF4796)(66%) |DUF4796(57%),tRNA_int_endo(100%),tRNA_int_endo_N(100%) 22 13 24 176 194 ENST00000688543.1 ENST00000564146.4 upstream downstream duplicates(4),low_entropy(1),mismappers(13),mismatches(9) CCGCCATCTTAGATGGCGGGAGTAAGAGGAAAACGATTGTGAGGCGGGAACGGCTTTCTGCTGCCTTTTTTGGGCCCCGAAAAGGGTCAGCTGGCCGGGCTTTGGGGCGCGTGCCCTGAGGCGCGGAGCGCGTTTGCTACGATGCGGGGGCTGCTCGGGGCTCCGTCCCCTGGGCTGGGGACGCGCCGAATGTGACCGCCTCCCGCTCCCTCACCCGCCGCGGGGAGGAGGAGCGGGCGAGAAGCTGCCGCCGAACGACAGGACGTTGGGGCGGCCTGGCTCCCTCAG|AGAGTATGATGGAAGGTCTGATCTTCATGTTGGAATAACTAACACAAATG___GGGTTGTGTATAATTACAGTGCACATGGTGTCCAGCGAGACGGAGAAGGGTGGGAAGAGAGCATAAGCATCCCATTACTGCAGCCCAACATGTATGGAATGATGGAGCAATGGGACAAGTACCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAF proto-oncogene serine/threonine-protein kinase TKL RAF P04049 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf-1 murine leukemia viral oncogene homolog 1 1 Yes pilocytic astrocytoma, prostate other, epithelial oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 13902 RAF1::MKRN2OS ENSG00000132155.14::ENSG00000225526.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2441 TRUE 945 RAF1 ENSG00000132155.14 protein_coding - - chr3:12582101-12664201:- chr3:12663813:- chr3:12623600-12705700:- chr3:12705312:- MKRN2OS ENSG00000225526.6 protein_coding - - chr3:12514934-12561059:- chr3:12542022:- chr3:12556433-12602558:- chr3:12583521:- chr3:12648347,chr3:12648352 chr3:12556122,chr3:12556124 NA NA chr3:12689846,chr3:12689851 chr3:12597621,chr3:12597623 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Domain_of_unknown_function_(DUF4796)(57%) |DUF4796(33%),tRNA_int_endo(100%),tRNA_int_endo_N(100%) 1 0 15 176 187 ENST00000688543.1 ENST00000564146.4 upstream downstream mismatches(7) GGCCGCCATCTTAGATGGCGGGAGTAAGAGGAAAACGATTGTGAGGCGGGAACGGCTTTCTGCTGCCTTTTTTGGGCCCCGAAAAGGGTCAGCTGGCCGGGCTTTGGGGCGCGTGCCCTGAGGCGCGGAGCGCGTTTGCTACGATGCGGGGGCTGCTCGGGGCTCCGTCCCCTGGGCTGGGGACGCGCCGAATGTGACCGCCTCCCGCTCCCTCACCCGCCGCGGGGAGGAGGAGCGGGCGAGAAGCTGCCGCCGAACGACAGGACGTTGGGGCGGCCTGGCTCCCTCAG|GGGTTGTGTATAATTACAGTGCACATGGTGTCCAGCGAGACGGAGAAGGGTGGGAAGAGAGCATAAGCATCCCATTACTGCAGCCCAACATGTATGGAATGATGGAGCAATGGGACAAGTACCTGGAAGACTTCTCCACCTCGGGGGCCTGGCTGCCTCACAG___GTATGAAGACAACCACCATAACTGCTACTCTTACGCACTCACGTTCATTAACTGCGTTCTGATGGCAGAAGGTAGACAGCAACTGGACAAGGGTGAATTTACGGAGAAGTgCGTGGTCCCGCGtACAAGGCTGcCATCCAAGTgCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAF proto-oncogene serine/threonine-protein kinase TKL RAF P04049 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf-1 murine leukemia viral oncogene homolog 1 1 Yes pilocytic astrocytoma, prostate other, epithelial oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 13903 RAF1::MKRN2OS ENSG00000132155.14::ENSG00000225526.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2441 TRUE 945 RAF1 ENSG00000132155.14 protein_coding - - chr3:12582101-12664201:- chr3:12663369:- chr3:12623600-12705700:- chr3:12704868:- MKRN2OS ENSG00000225526.6 protein_coding - - chr3:12514934-12561059:- chr3:12554134:- chr3:12556433-12602558:- chr3:12595633:- chr3:12648347,chr3:12648352 chr3:12556122,chr3:12556124 NA NA chr3:12689846,chr3:12689851 chr3:12597621,chr3:12597623 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none |Domain_of_unknown_function_(DUF4796)(100%) |DUF4796(100%),tRNA_int_endo(100%),tRNA_int_endo_N(100%) 1 0 48 9 48 ENST00000691899.1 ENST00000447550.1 upstream downstream mismatches(15) GCCAATTCCTTTTCTCTTGGGCCGCCGAATGTGGGACCCGGGCTTGCACCCTTTCTCAGGGTACTTCAGTCAAGTGACACCCTTTTAGAGACGACGTGAGGAATCGG|GAAAAGCAACTTTGCTACCAAACACTCGGGAGAAAAAGGCTATCAGATAGAAGCGGGTGAAGAAGCTGAGAAAACAGAAGAGAAGGGTGGCTGCCAGCTCGGGACTCAAAATGGCCATCTGGGCGTAGAGACACAGAGACCCTTTGCGCAGACGTGCGCCGAGGGTCTTGCAAAGCTTTCGTTTTCTTTGTGTGCCGACCTGCCCCTAGAAGCGGTTTTCGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAF proto-oncogene serine/threonine-protein kinase TKL RAF P04049 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf-1 murine leukemia viral oncogene homolog 1 1 Yes pilocytic astrocytoma, prostate other, epithelial oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 13904 RAF1::MKRN2OS ENSG00000132155.14::ENSG00000225526.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2441 TRUE 945 RAF1 ENSG00000132155.14 protein_coding - - chr3:12582101-12664201:- chr3:12663369:- chr3:12623600-12705700:- chr3:12704868:- MKRN2OS ENSG00000225526.6 protein_coding - - chr3:12514934-12561059:- chr3:12543229:- chr3:12556433-12602558:- chr3:12584728:- chr3:12648347,chr3:12648352 chr3:12556122,chr3:12556124 NA NA chr3:12689846,chr3:12689851 chr3:12597621,chr3:12597623 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Domain_of_unknown_function_(DUF4796)(66%) |DUF4796(57%),tRNA_int_endo(100%),tRNA_int_endo_N(100%) 0 1 25 9 194 ENST00000691899.1 ENST00000564146.4 upstream downstream duplicates(1),mismatches(6) GCCAATTCCTTTTCTCTTGGGCCGCCGAATGTGGGACCCGGGCTTGCACCCTTTCTCAGGGTACTTCAGTCAAGTGACACCCTTTTAGAGACGACGTGAGGAATCGG|AGAGTATGATGGAAGGTCTGATCTTCATGTTGGAATAACTAACACAAATG___GGGTTGTGTATAATTACAGTGCACATGGTGTCCAGCGAGACGGAGAAGGGTGGGAAGAGAGCATAAGCATCCCATTACTGCAGCCCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAF proto-oncogene serine/threonine-protein kinase TKL RAF P04049 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf-1 murine leukemia viral oncogene homolog 1 1 Yes pilocytic astrocytoma, prostate other, epithelial oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 13906 NFKBIA::EGLN3 ENSG00000100906.12::ENSG00000129521.15 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2442 FALSE NA NFKBIA ENSG00000100906.12 protein_coding - - chr14:35401079-35404749:- chr14:35404418:- chr14:35870285-35873955:- chr14:35873624:- EGLN3 ENSG00000129521.15 protein_coding - - chr14:33924227-34462774:- chr14:34127144:- chr14:34393433-34931980:- chr14:34596350:- chr14:35404187,chr14:35404189 chr14:34386827,chr14:34386826 NA NA chr14:35873393,chr14:35873395 chr14:34856033,chr14:34856032 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none |2OG-Fe(II)_oxygenase_superfamily(100%) Ank_2(5%)|2OG-FeII_Oxy(100%),2OG-FeII_Oxy_3(100%),2OG-FeII_Oxy_4(100%) 1 0 1 354 20 ENST00000216797.10 ENST00000546681.5 upstream downstream none CGCAGCAGCGCCCGCAGCTCGTCCGCGCCATGTTCCAGGCGGCCGAGCGCCCCCAGGAGgGGGCCATGGAGGGCCCCCGCGACGGGCTGAAGAAGGAGgGG...CAGATGGTCAAGGAGCTGCAGGAGATCCGCCTCGAGCCGCAGGAGGaGaCGCGCaGCTCGGAGCCCTGGAAGCAGCAGCTCACCGAGGACGGGGACTC|GGTGTATCAACCATTTTAAATCTGCCCTCAAAAGCACAGAACAAATCAGACAGCATTTTGCTC QMVKELQEIRLEPQEetRsSEPWKQQLTEDGDs|vyqpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13907 VTI1A::TCF7L2 ENSG00000151532.15::ENSG00000148737.18 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1366 FALSE NA FALSE NA VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112460582:+ chr10:114206756-114578503:+ chr10:114220341:+ TCF7L2 ENSG00000148737.18 protein_coding + + chr10:112950247-113167678:+ chr10:113141184:+ chr10:114710006-114927437:+ chr10:114900943:+ chr10:112462158,chr10:112462157,chr10:112462132 chr10:113091499,chr10:113091495,chr10:113091182 NA NA chr10:114221917,chr10:114221916,chr10:114221891 chr10:114851258,chr10:114851254,chr10:114850941 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Vesicle_transport_v-SNARE_protein_N-terminus(50%)|HMG_(high_mobility_group)_box(100%),N-terminal_CTNNB1_binding(24%) V-SNARE(16%)|CTNNB1_binding(2%),HMG_box(100%),HMG_box_2(100%) 19 17 13 110 145 ENST00000705995.1 ENST00000355995.9 downstream upstream duplicates(3),inconsistently_clipped(2),mismatches(5) CCGGGGTTCCTAAGCCGCGGGGCCCCTCGCTGCCCCTCGAGGCCCTTTCCCTGACCTAGGCTTTGGCCTGGGCTACTCGTTCCGGAGCCGCCATGTCGTCCGACTTCGAAGGTTACGAGCAGGACTTCGCGGTGCTCACTGCAGAGATCACCAGCAAGATTGCGAGGGTCCCACGACTCCCGCCTG___ATGAAAAGAAACAGATGGTTGCAAATGTGGAGAAACAGCTTGAAGAAGCGAAAGAACTG|TCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAATGAACACTTCACGCCGGGAAACCCACCTCCACACTTACCAGCCGACGTAGACCCCAAAACAG___GAATCCCACGGCCTCCGCACCCTCCAGATATATCCCCGTATTACCCACTATCGCCTGGCACCGT MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKEL|SNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISPYYPLSPGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Stomach,Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation TRUE transcription factor 7-like 2 1 Yes colorectal epithelial oncogene, fusion translocation 13909 HEATR5A::LINC02282 ENSG00000129493.15::ENSG00000257056.3 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HEATR5A ENSG00000129493.15 protein_coding - - chr14:31291788-31420550:- chr14:31307893:- chr14:31760994-31889756:- chr14:31777099:- LINC02282 ENSG00000257056.3 lncRNA - - chr14:28782909-28785798:- chr14:28784530:- chr14:29252115-29255004:- chr14:29253736:- chr14:31307543 chr14:28784728 NA NA chr14:31776749 chr14:29253934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 12 9 11 295 25 ENST00000543095.7 ENST00000664733.1 upstream downstream mismatches(1) ATCTGGGGCTACCATAAAGTCCCCTGAGGATGTCTACACTGATAGATTCCATCTTATTTTAG___GAATCAGCGTGGAATTTCTATGTTCCTTACGTTCAGATGCAACCATGGAAAGCATAACTGCTTGTTTACATGCATTGCAAGCACTTCTAGATGTACCTTGGCCCAGATCAAAAATTGGCAGTGATCAG|GTCTAATTTCCGGAGGAGCCCTAACTGTCCTGTCCTGCCTACATTGCCTGCCCTCTAACATCCTGGGAATGGGAAGTAACACTGGGATCGGTGGCGGCAGAACTGCGGACCCTAACAACTTCAGATTGTTGAAAGGGGGAGGGGAGAATGGAAGAGAGGAATGGAAAGGC SGATIKSPEDVYTDRFHLILGISVEFLCSLRSDATMESITACLHALQALLDVPWPRSKIGSDQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13911 NUBPL::ENSG00000286040 ENSG00000151413.17::ENSG00000286040.1 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31599379:+ chr14:31959162-32330430:+ chr14:32068585:+ ENSG00000286040 ENSG00000286040.1 lncRNA - - chr14:29415856-29500460:- chr14:29490186:- chr14:29885062-29969666:- chr14:29959392:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion high none NUBPL_iron-transfer_P-loop_NTPase(25%)| AAA_31(100%),CbiA(12%),MipZ(13%),ParA(12%)| 1 5 2 562 12 ENST00000281081.12 unknown downstream downstream duplicates(1),mismappers(2),mismatches(2) GGGGATTTGGCAGCGTCTGCTGCTTTTTGGTGGGGTGTCGCTCCGGGCTGGTGGCGGGGCCACTGCCCCGCTTGGGGGAAGCCGAGCGATGGTTTGTGGG...TCGGAAAATCTACTACAGCAG___TGAATCTTGCACTTGCACTAGCAGCGAACGATTCG___TCCAAGGCCATTGGTTTGCTAGATGTGGATGTGTATGGACCTTCAGTTCCAAAGATGATGAATCTGAAAGGAAATCCGGAATTATCACAGA|GAGGATTCGAACAGCCCACTCTCCTGGACTCAGAGAGAAATCTTTTTCACACCTCTCCCAAAGACACTGGTGCCGGAAGCATGCGCTGGGCCATATGTAAGAAGCA GKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMNLKGNPELSQ|rgfeqptlldsernlfhtspkdtgagsmrwaickk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13912 NUBPL::PRKD1 ENSG00000151413.17::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31826714:+ chr14:31959162-32330430:+ chr14:32295920:+ PRKD1 ENSG00000184304.17 protein_coding - - chr14:29576479-30191898:- chr14:30047787:- chr14:30045685-30661104:- chr14:30516993:- chr14:31829788,chr14:31829789 chr14:30062198,chr14:30062200 NA NA chr14:32298994,chr14:32298995 chr14:30531404,chr14:30531406 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none NUBPL_iron-transfer_P-loop_NTPase(67%)|PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) AAA_31(100%),CbiA(91%),MipZ(93%),ParA(89%)|C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 2 456 9 ENST00000281081.12 ENST00000549503.1 downstream downstream mismatches(1) CTTAGTTGTAGACATGCCACCAGGAACTGGAGATGTGCAGTTATCAGTCTCACAGAATATTCCTATAACAG___GTGCTGTGATTGTCTCCACGCCCCAGGACATCGCATTGATGGATGCACACAAGGGTGCTGAGATGTTTCGCAGAGTCCACGTGCCC|TTTCTCTTGCTGCCATGATGTAAGAAGTGCCTTTCACCTCTCACCATGATTCTGAGCCCTCCCCAGCCATGTGGAACTGTAAGTCCAATTAAACCTCTTTTTCTTCCCA...TAAGCAGgGgAgGTAACATCCCAAAAGATAGGAATGTTACCACcTcAGAAAATTCCgTAATtAGCTAAAAGAGCTTAGCAGTTATAGCTtTCCAAAACAAC LVVDMPPGTGDVQLSVSQNIPITGAVIVSTPQDIALMDAHKGAEMFRRVHVP|flllp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase D1 CAMK PKD Q15139 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Protein Kinase D1 2 cribriform adenocarcinoma of the minor salivary glands, polymorphous adenocarcinoma of the minor salivary glands epithelial fusion translocation 13915 HEATR5A::AKAP6 ENSG00000129493.15::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HEATR5A ENSG00000129493.15 protein_coding - - chr14:31291788-31420550:- chr14:31371810:- chr14:31760994-31889756:- chr14:31841016:- AKAP6 ENSG00000151320.11 protein_coding + - chr14:32329298-32837684:+ chr14:32605794:- chr14:32798504-33306890:+ chr14:33075000:- chr14:31365767 chr14:32689020 NA NA chr14:31834973 chr14:33158226 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 2 0 270 3 ENST00000543095.7 unknown upstream downstream none GGAAGGACGAGCTGGTGCACTGTGTG___CTATCAAGAGCTTTGTTTCCCACTGTGGTGATCTTCTTACTGAGGAAGTAACTCAGCGTCTTCTTCCACCACTTCCTTGTGCTGTGGATTTGCTAACTCA|GTCTAAGATGAAATAGATGATCATAACTGCTGTGCTTGGAGATGCATTTCATGGCACAATTTGTACATGACCTGTGCAAGGTCACGTCATGGAAAGAGGACTGACATAATGGCTAAGAAGCCAAATCCAGCTTTTAGTCATGGAGAACTTCAGGGTAACCTATTTAAGCTTGCTC EGRAGALCAIKSFVSHCGDLLTEEVTQRLLPPLPCAVDLLTq|skmk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13916 ENSG00000203546::AKAP6 ENSG00000203546.7::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2443 TRUE 946 ENSG00000203546 ENSG00000203546.7 protein_coding - - chr14:31334312-31457441:- chr14:31371810:- chr14:31803518-31926647:- chr14:31841016:- AKAP6 ENSG00000151320.11 protein_coding + - chr14:32329298-32837684:+ chr14:32605794:- chr14:32798504-33306890:+ chr14:33075000:- chr14:31365767 chr14:32689020 NA NA chr14:31834973 chr14:33158226 NA NA sense antisense unknown 3'UTR/splice-site intron duplication/5'-5' high none none Tyr_Deacylase(100%)| 1 2 0 270 3 ENST00000549185.5 unknown upstream downstream none GGAAGGACGAGCTGGTGCACTGTGTG___CTATCAAGAGCTTTGTTTCCCACTGTGGTGATCTTCTTACTGAGGAAGTAACTCAGCGTCTTCTTCCACCACTTCCTTGTGCTGTGGATTTGCTAACTCA|GTCTAAGATGAAATAGATGATCATAACTGCTGTGCTTGGAGATGCATTTCATGGCACAATTTGTACATGACCTGTGCAAGGTCACGTCATGGAAAGAGGACTGACATAATGGCTAAGAAGCCAAATCCAGCTTTTAGTCATGGAGAACTTCAGGGTAACCTATTTAAGCTTGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13917 ENSG00000203546::AKAP6 ENSG00000203546.7::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2443 TRUE 946 ENSG00000203546 ENSG00000203546.7 protein_coding - - chr14:31334312-31457441:- chr14:31457029:- chr14:31803518-31926647:- chr14:31926235:- AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32535554:+ chr14:32798504-33306890:+ chr14:33004760:+ chr14:31436421 chr14:32408949 NA NA chr14:31905627 chr14:32878155 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion low none |Spectrin_repeat(100%) Tyr_Deacylase(3%)|Spectrin(100%) 1 0 0 412 20 ENST00000547760.1 ENST00000280979.9 upstream upstream none CCGGCGGTCCGGCCGCGGGGATACCGGGTCAGCTTGAAGCTGGCCGCGGTGGCCTGCCTGGCTGCGCTTGTCTTTTCGGTCCAGCATCACCGTTCCCCAGCGCCAGTTGTAGCACCCGAGAGGAAGAGCGTGTCTCCCTTCTTGGGGGGACCACAG|GACATTTGTGAAGATATTTCTGATCATGTTGAGCAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13918 VPS54::WDPCP ENSG00000143952.20::ENSG00000143951.16 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2444 TRUE 947 VPS54 ENSG00000143952.20 protein_coding - - chr2:63892146-64019428:- chr2:63965835:- chr2:64119280-64246562:- chr2:64192969:- WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63711591:- chr2:63346694-64054977:- chr2:63938725:- chr2:63964159,chr2:63964162 chr2:63712901,chr2:63712901 NA NA chr2:64191293,chr2:64191296 chr2:63940035,chr2:63940035 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Vacuolar-sorting_protein_54__of_GARP_complex_(1%)|WD_repeat-containing_and_planar_cell_polarity_effector_protein_Fritz(100%) Vps54_N(0%)|Frtz(100%),Ldh_1_C(100%),Ldh_1_N(100%) 2 6 6 74 16 ENST00000272322.9 ENST00000490935.5 upstream downstream duplicates(1),mismatches(3) CTCTTTTACATACTCATG___ATAAATCCAGGACAGATCTGGAGCAAGTACCTAAG___ATTTTTATGAAACCAGATTTTGCCTTGGATGATTCCTTAACTTTTAATTCAGTTTTACCATGGTCTCATTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCCTCAAAGTTGCTTCAAGAAAAG|ATAGATGGGGTCTCACTcTGTTGTCCAGGCTGACCTGGAACTCCTGGGCTGAAGCGATCCTCCAACCTTGGCCTCTCAAAGTTCTGGGATTATAG___GATGAGACTGTGATGCCTGGATGTACAGCCATCTGTTGACCATAATACTGAAAGCCAACAAACTAAGAACGAT LLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEK|idgvslccpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13919 VPS54::WDPCP ENSG00000143952.20::ENSG00000143951.16 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2444 TRUE 947 VPS54 ENSG00000143952.20 protein_coding - - chr2:63892146-64019428:- chr2:63965835:- chr2:64119280-64246562:- chr2:64192969:- WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63650838:- chr2:63346694-64054977:- chr2:63877972:- chr2:63964159,chr2:63964162 chr2:63712901,chr2:63712901 NA NA chr2:64191293,chr2:64191296 chr2:63940035,chr2:63940035 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Vacuolar-sorting_protein_54__of_GARP_complex_(1%)|WD_repeat-containing_and_planar_cell_polarity_effector_protein_Fritz(100%) Vps54_N(0%)|Frtz(100%),Ldh_1_C(100%),Ldh_1_N(100%) 2 0 0 74 10 ENST00000272322.9 ENST00000490935.5 upstream downstream none GGACTGTATATCATTCCAAAGTAAATCTCCCAGCAGCATTAAACGATCCTAGATTAGCAAAAAGAGAATCTGACTTCTTCACAAAAACATGGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCATTCTACCTCCCACAGATCAGCAAGGAACATTTTACAGTATATCAACAGGAAATCTCTCAG___AGAGAGAAGA...TTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCCTCAAAGTTGCTTCAAGAAAAG|ACTTTGCCAACCCCAATGCATTGCACCTCTCATTGCATGTGAA FNTAGGKGNRDAASSKLLQEK|tlptpmhctshcm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13926 ARHGAP5::AKAP6 ENSG00000100852.14::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2447 TRUE 948 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32140519:+ chr14:32545320-32628934:+ chr14:32609725:+ AKAP6 ENSG00000151320.11 protein_coding + - chr14:32329298-32837684:+ chr14:32436468:- chr14:32798504-33306890:+ chr14:32905674:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/3'-3' medium none FF_domain(100%),Ras_family(100%),RhoGAP_domain(9%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)| FF(100%),Ras(100%),RhoGAP(81%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(100%)| 2 1 2 14 6 ENST00000345122.8 unknown downstream downstream mismappers(4) CCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG___AATGTGTTGTTTGGCCGAGCACAGTGGCCCACGCCTGTGATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCGACTAAAAATACAAAAAA...TTGGCGGGCGCATGCTGTAGTCCTAACTACTCTGGAGGCTGAGGCAGGAGAACGGTGTGAACCCAGGAG|ATTCCCAGGACTTGTTGATAGACATGTATGTGGAGTGGAGAGTCATGCTTTGGCTTAACAGAGTAGTGACGTTTACTGAAACTGGTAAGATTGGGAG...___CAGGGGAGACAGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13927 ARHGAP5::AKAP6 ENSG00000100852.14::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2447 TRUE 948 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32545230:+ chr14:32798504-33306890:+ chr14:33014436:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|Spectrin_repeat(100%) FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)|Spectrin(100%) 1 0 1 2619 8 ENST00000345122.8 ENST00000280979.9 downstream upstream none CTTCTTTCTCCTGTTGAAACTTGGAAAGGcGGTATTGATAtTCCTGCAATCACTTCTGACCAGGAGTTAGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|GGCCGGCTTGATTCTCTAACAGAAGTGGATGACTCAGGACAATTAACCATCAAATGTTCTCAAAATTACTTGTCTCTGGATTGTGGCATTACTGCATTCGAACTGTCTGACTACAGTCCAAG LLSPVETWKGGIDiPAITSDQELDDKKMKKKTHKVKEDKK|GRLDSLTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13928 ARHGAP5::AKAP6 ENSG00000100852.14::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2447 TRUE 948 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32433460:+ chr14:32798504-33306890:+ chr14:32902666:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|Spectrin_repeat(100%) FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)|Spectrin(100%) 0 1 3 2619 52 ENST00000345122.8 ENST00000280979.9 downstream upstream none AGAAGATCCACTTCTTTCTCCTGTTGAAACTTGGAAAGGTGGTATTGATAATCCTGCAATCACTTCTGACCAGGAGTTAGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|CTGTTTTGGAAAGAAGTGAGGTTT...CCATGAGCGTGACACTTTCCCCCCTGAGGTCACAGGACCTGGATCCCATGGCTACTGATGCTTCACCCATGGCCATCAACATGACACCCACTGTGGAGCAGGGTGAGGGAGAAGAGGCAATGAAGG EDPLLSPVETWKGGIDNPAITSDQELDDKKMKKKTHKVKEDKK|lfwkevr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13929 ARHGAP5::AKAP6 ENSG00000100852.14::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2447 TRUE 948 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32077435:+ chr14:32545320-32628934:+ chr14:32546641:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32433460:+ chr14:32798504-33306890:+ chr14:32902666:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none RhoGAP_domain(0%)|Spectrin_repeat(100%) RhoGAP(0%)|Spectrin(100%) 0 1 0 873 52 ENST00000396582.6 ENST00000280979.9 downstream upstream none GGGGCCGCTGCCGTTGAGGAGGAGACGGAGGAGACCGACGTTGTTAG|CTGTTTTGGAAAGAAGTGAGGTTTAGACTTCTCCATGTTAACCATGAGCGTGA...ACTGATGCTTCACCCATGGCCATCAACATGACACCCACTGTGGAGCAGGGTGAGGGAGAAGAGGCAATGAAGGACATGGACTCTGACCAGCAGTATGAAAA GPLPLRRRRRRPTLL|avlersev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13930 HECTD1::ENSG00000248975 ENSG00000092148.14::ENSG00000248975.2 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31156840:- chr14:31569323-31677010:- chr14:31626046:- ENSG00000248975 ENSG00000248975.2 lncRNA - + chr14:29952397-30297043:- chr14:30184030:+ chr14:30421603-30766249:- chr14:30653236:+ chr14:31151951 chr14:30179384 NA NA chr14:31621157 chr14:30648590 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%)| 0 2 3 1021 7 ENST00000553700.5 unknown upstream upstream mismatches(1) TGATGATGGCCACTTGCTGGCTTTGCAGATCATAAGGGATTTAGTAGATAAAGGTGGTGATATATTTTTGGATCAGCTAGCCAGACTTGGTGTAATTAGCAAAGTGTCAACGTTGGCAGGTCCTTCCTCTGATGATGAGAATGAAGAGGAATCAAAACCAGAAAAA|GACGACAGTACCTAATGAGTTTCAATAATTTTAAGAAATAAAAACAAAAGAAAAATGGAATTCAGAAGCTCCCTTCCTTTCCATGTACTCTAAGAATGTGAAATATACTTATTCCAAGTACGTGCAAGGATATTTCATCACCAGATCAGTATAACCTCAGAGAAATATGTCTTAAACCTTCAAGCTACAATACCCTGAGATGATGCATCAAAAGCCTG DDGHLLALQIIRDLVDKGGDIFLDQLARLGVISKVSTLAGPSSDDENEEESKPEK|ddst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13932 HECTD1::PRKD1 ENSG00000092148.14::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31156840:- chr14:31569323-31677010:- chr14:31626046:- PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:30184030:+ chr14:30045685-30661104:- chr14:30653236:+ chr14:31151951 chr14:30179384 NA NA chr14:31621157 chr14:30648590 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%)| 0 2 2 1021 7 ENST00000553700.5 unknown upstream upstream mismatches(1) TGATGATGGCCACTTGCTGGCTTTGCAGATCATAAGGGATTTAGTAGATAAAGGTGGTGATATATTTTTGGATCAGCTAGCCAGACTTGGTGTAATTAGCAAAGTGTCAACGTTGGCAGGTCCTTCCTCTGATGATGAGAATGAAGAGGAATCAAAACCAGAAAAA|GACGACAGTACCTAATGAGTTTCAATAATTTTAAGAAATAAAAACAAAAGAAAAATGGAATTCAGAAGCTCCCTTCCTTTCCATGTACTCTAAGAATGTGAAATATACTTATTCCAAGTACGTGCAAGGATATTTCATCACCAGATCAGTATAACCTCAGAGAAATATGTCTTAAACCTTCAAGCTACAATACCCTGAGATGATGCATCAAAAGCCTG DDGHLLALQIIRDLVDKGGDIFLDQLARLGVISKVSTLAGPSSDDENEEESKPEK|ddst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13933 ARHGAP5::ENSG00000258580 ENSG00000100852.14::ENSG00000258580.1 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2448 FALSE NA ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ ENSG00000258580 ENSG00000258580.1 lncRNA - - chr14:32373337-32417974:- chr14:32385144:- chr14:32842543-32887180:- chr14:32854350:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)| FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)| 3 0 1 2619 6 ENST00000345122.8 ENST00000557371.1 downstream downstream none TAAATCTAAAACCTTGTTTAGTAAAGCCAAGTCATACTATAGAAGAACACATTCAGATGCCAGTGATGATGAGGCTTTCACCACTTCTAAAACAAAAAGAAAAGGA...GAAAGGTGGTATTGATAATCCTGCAATCACTTCTGACCAGGAGTTAGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|AGTGTCATGAGGCAAGATGGAGTTTCTTATTGAAGGTGAAGGCCAAGCAAGACCAGCGACAGCATCATGACAG___AGCATCTCA KGGIDNPAITSDQELDDKKMKKKTHKVKEDKK|svmrqdgvsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13935 G2E3::FOXG1-AS1 ENSG00000092140.16::ENSG00000257126.6 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA G2E3 ENSG00000092140.16 protein_coding + + chr14:30559158-30620064:+ chr14:30559272:+ chr14:31028364-31089270:+ chr14:31028478:+ FOXG1-AS1 ENSG00000257126.6 lncRNA - + chr14:28726675-28765292:- chr14:28754596:+ chr14:29195881-29234498:- chr14:29223802:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 0 3 0 780 3 ENST00000206595.11 unknown downstream upstream none GTGGCTGCTCGCGGTCGGCGTGCCCCGACGTACAGCGGGCCGGGAAAAGTGGCACTGAGGCTCTGGAACTTCTGCCCAGCTCTCCTTG|ATTAAGAAAAAACTGGAAAGATGAAGTAACTTGCCTAAGGATCCATAGGAAAA...AACGTGTTCCAGCTGTGAACAATGACGATATTCATCTTTTTAAGTCAAAACCCACTGGGTAATATTTATTACCCTTTAAGTCAGTTTCAGTTTGCATTGCCCCTGATGGTCTTCTCCTTGGACACTAGGTATGTATTAATCATGAGGGCAGATGATTTTCCCAGGCTAAATTTACTTGAAAGGGTAAGAAGCCTAATAGACGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13936 HECTD1::AKAP6 ENSG00000092148.14::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31134943:- chr14:31569323-31677010:- chr14:31604149:- AKAP6 ENSG00000151320.11 protein_coding + - chr14:32329298-32837684:+ chr14:32773866:- chr14:32798504-33306890:+ chr14:33243072:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Ankyrin_repeats_(3_copies)(100%),Sad1_/_UNC-like_C-terminal_(46%)| Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%),Sad1_UNC(11%)| 1 0 2 684 8 ENST00000693685.1 unknown upstream downstream none TGATGATAAGAATGCCTGGTTTGCCATAGATCTGGGTCTCTGGGTGATACCATCAGCATATACACTTCGTCATGCTCGTGGTTATGGAAGGTCTGCACTGAGAAATTGGGTTTTCCAG|ACGTGTTTGCCACTGGACGGCTTGCATGACAATGGCTTCCCACCTTCTTTCAAGATTTACAATGATCAGC DDKNAWFAIDLGLWVIPSAYTLRHARGYGRSALRNWVFQ|tclpldglhdngfppsfkiyndq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13938 HECTD1::NUBPL ENSG00000092148.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2449 TRUE 949 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31178020:- chr14:31569323-31677010:- chr14:31647226:- NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31599289:+ chr14:31959162-32330430:+ chr14:32068495:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |NUBPL_iron-transfer_P-loop_NTPase(86%) |AAA_31(0%),CbiA(87%),MipZ(86%),ParA(87%) 1 0 2 713 592 ENST00000553700.5 ENST00000281081.12 upstream upstream none GTTTTGAAAC___ATGTCCTCCTCGtACTTTCTTACCAGCCCTTTGCAAAATTTTTCTTGATGAAAGTGCTCCAGACAATGTATTAGAGGTGACAGCCCGTGCCATAACATACTACCTGGATGTATCTGCGGAATGTACCCGAAGGATTGTTGGGGTAGATGGAGCTATAAAAGCACTTTGTAATCGTTTGGTTGTAGTTGAACTTAACAACAGGACTAGCAGAGACTTAGCtGAACAGTGTGTAAAG|TCCAAGGCCATTGGTTT FETCPPRTFLPALCKIFLDESAPDNVLEVTARAITYYLDVSAECTRRIVGVDGAIKALCNRLVVVELNNRTSRDLAEQCVK|SKAIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13939 HECTD1::NUBPL ENSG00000092148.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2449 TRUE 949 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31205797:- chr14:31569323-31677010:- chr14:31675003:- NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31599289:+ chr14:31959162-32330430:+ chr14:32068495:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |NUBPL_iron-transfer_P-loop_NTPase(86%) |AAA_31(0%),CbiA(87%),MipZ(86%),ParA(87%) 1 1 1 723 592 ENST00000553700.5 ENST00000549838.5 upstream upstream none GAGATGAAAGGGACATGCAACTAATAGCCCTTGAACAGCTATGCATGCTGCTTTTGATGTCTGACAACGTGGATCGTTGTTTTGAAAC|TCCAAGGCCATTGGTTTGCTAGATGTGGATGTGTATGGACCTTCAGTTCCAAAGATGATGAATCTGAAAGGAAATCCGGAATTATCACAGA___GTATATCTCAGAGATGTTGCAGGTCTTGTTCC DERDMQLIALEQLCMLLLMSDNVDRCFEt|prplvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13940 HECTD1::NUBPL ENSG00000092148.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2449 TRUE 949 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31168298:- chr14:31569323-31677010:- chr14:31637504:- NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31557825:+ chr14:31959162-32330430:+ chr14:32027031:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Ankyrin_repeats_(3_copies)(100%)|NUBPL_iron-transfer_P-loop_NTPase(100%) Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%)|AAA_31(100%),CbiA(100%),MipZ(100%),ParA(100%) 0 1 2 581 6 ENST00000553700.5 ENST00000552814.1 upstream upstream none CCGGAAATGGCACCCATATACTTGAAAAGGTTATTGCCAGTGTTTGCACAAACATTTCAGCAAACTATGCTGCCTTCAATAAG|CTTTGATGCCTGAAGGTA...GGATACCAAGGATACCAAGATGATGGAACAAAAAGAATTGATTTGGAACATGACGGCACTATGGATTCATCGTATTGGACCTCTGTGATATAATTCTGA PEMAPIYLKRLLPVFAQTFQQTMLPSIs|fda* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13941 HECTD1::NUBPL ENSG00000092148.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2449 TRUE 949 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31205797:- chr14:31569323-31677010:- chr14:31675003:- NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31787780:+ chr14:31959162-32330430:+ chr14:32256986:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |NUBPL_iron-transfer_P-loop_NTPase(56%) |CbiA(21%),MipZ(20%),ParA(24%) 1 0 1 723 490 ENST00000553700.5 ENST00000281081.12 upstream upstream none GAGATGAAAGGGACATGCAACTAATAGCCCTTGAACAGCTATGCATGCTGCTTTTGATGTCTGACAACGTGGATCGTTGTTTTGAAAC|GTAGATTGGGGTCAACTGGACTACTTAGTTGTAG DERDMQLIALEQLCMLLLMSDNVDRCFEt|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13942 HECTD1::NUBPL ENSG00000092148.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2449 TRUE 949 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31168298:- chr14:31569323-31677010:- chr14:31637504:- NUBPL ENSG00000151413.17 protein_coding + - chr14:31489956-31861224:+ chr14:31571319:- chr14:31959162-32330430:+ chr14:32040525:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%)| 2 0 0 581 2 ENST00000553700.5 unknown upstream downstream none CACCCATATACTTGAAAAGGTTATTGCCAGTGTTTGCACAAACATTTCAGCAAACTATGCTGCCTTCAATAAG|ATCATAAACAACAGAACAAGAGGTGCACATCAAGAGGAGGGTAGCCTGAATTTCT PIYLKRLLPVFAQTFQQTMLPSIr|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13944 AKAP6::PTCSC3 ENSG00000151320.11::ENSG00000259104.3 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2450 TRUE 950 AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32735882:+ chr14:32798504-33306890:+ chr14:33205088:+ PTCSC3 ENSG00000259104.3 lncRNA - - chr14:36130677-36217284:- chr14:36136356:- chr14:36599883-36686490:- chr14:36605562:- chr14:32750332,chr14:32750332 chr14:36137035,chr14:36137034 NA NA chr14:33219538,chr14:33219538 chr14:36606241,chr14:36606240 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Spectrin_repeat(100%)| Spectrin(100%)| 1 1 0 8 4 ENST00000280979.9 ENST00000706910.1 downstream downstream none GGCTAAGAGATACAGAGCTTTTCATCTTCAATTCCTGTCTGAGACAAGAAAAGGAAGGAACAATGAATACTGAGAAACAACTGCAATACTTTAAG|AGACAGTGCTCTGCAGGGAGTCTACCACTGTGATGGTTAATACTGAGTGTCAA...GTGAGGGTGTTGCCAAAGGAGATTAACATTTGAGTCAGTGGGCTGGGAAAGGTAGcCCCAGCCGTAATCTAGGTGGGCACCATCTAATCAGCTGCCAGCAC LRDTELFIFNSCLRQEKEGTMNTEKQLQYFK|rqcsagslpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13945 AKAP6::PTCSC3 ENSG00000151320.11::ENSG00000259104.3 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2450 TRUE 950 AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32732600:+ chr14:32798504-33306890:+ chr14:33201806:+ PTCSC3 ENSG00000259104.3 lncRNA - - chr14:36130677-36217284:- chr14:36136356:- chr14:36599883-36686490:- chr14:36605562:- chr14:32750332,chr14:32750332 chr14:36137035,chr14:36137034 NA NA chr14:33219538,chr14:33219538 chr14:36606241,chr14:36606240 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Spectrin_repeat(100%)| Spectrin(100%)| 1 0 0 5 4 ENST00000280979.9 ENST00000706910.1 downstream downstream none AAAAGACGGAGCTGCTTAGTAAGGTTGAAGCTTTGAAGAAAGGTGGCGTTTTACTACCAAATGATCTCCTTGAAAAAGTGGATTCAATTAATGAAAAATGGGAACTGCTTGGG|AGACAGTGCTCTGCAGGGAGTCTACCACTGTGATGGTTAATACTGAGTGTCAACTTGATTGGATTGAAGGATG KTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLG|rqcsagslpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13947 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117287:+ chr14:32545320-32628934:+ chr14:32586493:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31859118:+ chr14:31959162-32330430:+ chr14:32328324:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none FF_domain(100%),Ras_family(100%),RhoGAP_domain(9%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|NUBPL_iron-transfer_P-loop_NTPase(4%) FF(100%),Ras(100%),RhoGAP(51%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(100%)|ParA(0%) 1 0 1 2624 443 ENST00000345122.8 ENST00000281081.12 downstream upstream none CTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG|GCCAAAGCTTACTTGAGGATTGCTGTGGAAGTGGTAAGAAGATTGCCATCACCTTCAGAATGATTCCC...CATAACTGTTTTATTTCTAAGGAAAGAATGTCTTCATATTTGACTTGCTAAGCTAAGGTTCACAAAACTTTGATGTATCAATGTTAACTGCTATATTTAGG FNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDT|gqslledccgsgkkiaitfrmi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 TRUE|FALSE 32142561|32256986 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13948 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32077435:+ chr14:32545320-32628934:+ chr14:32546641:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31826629:+ chr14:31959162-32330430:+ chr14:32295835:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none RhoGAP_domain(0%)|NUBPL_iron-transfer_P-loop_NTPase(43%) RhoGAP(0%)|CbiA(8%),MipZ(6%),ParA(10%) 1 1 0 873 495 ENST00000396582.6 ENST00000281081.12 downstream upstream none GGAGCGGTCCCCAGGAATGTCGCTGCCGCCGCCACCGCCGGGGCCGCTGCCGTTGAGGAGGAGACGGAGGAGACCGACGTTGTTAG|GTGCTGTGATTGTCTCCACGCCCCAGGACATCGCATTGATGGA...GGTCTTGAAGTTCTAG___GAGACATTCCCTTACACCTTAATATAAGGGAAGCTTCAGATACAGGCCAGCCAATTGTGTTTTCACAGCCTGAAAGTGATGAGG MSLPPPPPGPLPLRRRRRRPTLL|gAVIVSTPQDIALM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 FALSE|FALSE 32142561|32256986 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13949 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31599289:+ chr14:31959162-32330430:+ chr14:32068495:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|NUBPL_iron-transfer_P-loop_NTPase(86%) FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)|AAA_31(0%),CbiA(87%),MipZ(86%),ParA(87%) 2 0 0 2619 592 ENST00000345122.8 ENST00000281081.12 downstream upstream duplicates(1) CTTTCTCCTGTTGAAACTTGGAAAGGTGGTATTGATAATCCTGCAATCACTTCTGACCAGGAGTTAGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|TCCAAGGCCATTGGTTTGCTAGATGTGGATGTGTATGGACCTTCAGTTCCAAAGATGATGAATCTGAAAGGAAATCCG LSPVETWKGGIDNPAITSDQELDDKKMKKKTHKVKEDKK|SKAIGLLDVDVYGPSVPKMMNLKGN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 FALSE|TRUE 32142561|32256986 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13950 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31846471:+ chr14:31959162-32330430:+ chr14:32315677:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|NUBPL_iron-transfer_P-loop_NTPase(32%) FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)|CbiA(1%),MipZ(0%),ParA(4%) 0 2 0 2619 396 ENST00000345122.8 ENST00000281081.12 downstream upstream none TAGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|GTCCTTGGCCTTGTCCAAAACATGAGTGTTTTCCAGTGTCCAAAATGTAAACACAAA...CCTGAAAGTGATGAG___GCCAAAGCTTACTTGAGGATTGCTGTGGAAGTGGTAAGAAGATTGCCATCACCTTCAGAATGATTCCCCAAGTGTCCTGGAAATTTGCC DDKKMKKKTHKVKEDKK|VLGLVQNMSVFQCPKCKH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 FALSE|TRUE 32142561|32256986 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13951 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32077435:+ chr14:32545320-32628934:+ chr14:32546641:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31787780:+ chr14:31959162-32330430:+ chr14:32256986:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none RhoGAP_domain(0%)|NUBPL_iron-transfer_P-loop_NTPase(56%) RhoGAP(0%)|CbiA(21%),MipZ(20%),ParA(24%) 0 1 0 873 490 ENST00000396582.6 ENST00000281081.12 downstream upstream none CGCTGCCGTTGAGGAGGAGACGGAGGAGACCGACGTTGTTAG|GTAGATTGGGGTCAACTGGACTACTTAGTTGTAGACATGCCACCAGGAACTGGAGATGT...TCTCCACGCCCCAGGACATCGCATTGATGGATGCACACAAGGGTGCTGAGATGTTTCGCAGAGTCCACGTGCCC___GCCAAAGCTTACTTGAGGATTGCTGTG LPLRRRRRRPTLL|grlgstgllscrhatrnwr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 FALSE|FALSE 32142561|32256986 FALSE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13952 ARHGAP5::NUBPL ENSG00000100852.14::ENSG00000151413.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2451 TRUE 951 ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32077435:+ chr14:32545320-32628934:+ chr14:32546641:+ NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31673355:+ chr14:31959162-32330430:+ chr14:32142561:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none RhoGAP_domain(0%)|NUBPL_iron-transfer_P-loop_NTPase(74%) RhoGAP(0%)|CbiA(61%),MipZ(60%),ParA(62%) 0 0 0 873 476 ENST00000396582.6 ENST00000281081.12 downstream upstream mismatches(1) AGGAGACCGACGTTGTTAG|GCAACCTAATGAGGCCTCTCTTGAATTATGGTATTGCTTG___TATGTCTATGGGCTTTCTGGTTGAAGAAAGTGAACCAGTAGT...TGATTCTTCCCTTAGGGTGGGCTGCCTGCATCCATAGTGCCCTTCTTACCCTTGGGAATTGAGCACACACAGTGTGTTTGGGAAATTGTACACATGCCC RRPTLL|gNLMRPLLNYGIACMSMGFLVEESEPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 32586493|32563592 FALSE|FALSE 32142561|32256986 TRUE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13956 SCFD1::LINC02326 ENSG00000092108.22::ENSG00000257523.3 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SCFD1 ENSG00000092108.22 protein_coding + + chr14:30622291-30737694:+ chr14:30653588:+ chr14:31091497-31206900:+ chr14:31122794:+ LINC02326 ENSG00000257523.3 lncRNA - - chr14:28875404-29064993:- chr14:28905285:- chr14:29344610-29534199:- chr14:29374491:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Sec1_family(40%)| Sec1(21%)| 1 0 1 1369 3 ENST00000678124.1 ENST00000650159.1 downstream downstream none GTTGACAGCCTCTTCTGCTTTTTTGTTACTCTGG___GTGCTGTTCCTATAATCAGATGTTCAAGAGGAACAGCAGCAGAAATGGTAGCAGTG___AAACTAGACAA...GACATATCAAGCATTGGTGCACGATGTACTG|CTGATTTACAGAGATAGACTGCAGAAGGGCAAGAGTGAAAGCAGAAAATATTGCTAGTATATAACTCCAG TYQALVHDVL|liyrdrlqkgksesrkyc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13960 STRN3::PRKD1 ENSG00000196792.12::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2452 TRUE 952 STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:30033713:+ chr14:30045685-30661104:- chr14:30502919:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' low none Striatin_family(23%)| Striatin(0%)| 1 1 0 331 4 ENST00000355683.9 unknown upstream upstream mismatches(1) GGCCTTTCGCCCGGGGGGAACGGAGCGGCGGGCGGCGGGGGgCCTCCGGCCTCCGAGGGAGgGGGgCCCGCGGCAGGgCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|AGGATACAGTGaAGGATTCAGAGGTCGTAGAAGATGGTGGAGTCTCTGGATGGAAGGAAGCTGGGTCTCTAAATCACAAGGTGGAAGACGACTCACCA GLSPGGNGAAGGGGPPASEGgGPAAGPELSRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQ|riq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13961 STRN3::PRKD1 ENSG00000196792.12::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2452 TRUE 952 STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- PRKD1 ENSG00000184304.17 protein_coding - - chr14:29576479-30191898:- chr14:29929790:- chr14:30045685-30661104:- chr14:30398996:- chr14:31003190 chr14:29951675 NA NA chr14:31472396 chr14:30420881 NA NA sense sense out-of-frame CDS/splice-site intron deletion low none Striatin_family(23%)|PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) Striatin(0%)|C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 0 331 2 ENST00000355683.9 unknown upstream downstream none GGGAGGTGGAACGGGCCGAACTGCAG|GGCAAGGACCACCTGTCTTCACAGCTGTGCAACTGGTGCCAGTACAGTGCCTGGAACAGAGAAGTCCTCAACATG...CCAGCAAGCTTTTTTTTGATAATAGAAAACTGTGGAATATTAACTTTATTCTGATTTCAAAGAAAATGAAGTATAGTTTCGGACATTTAAAAGAAAAAAAC EVERAELQ|gkdhlssqlcnwcqysawnrevln NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase D1 CAMK PKD Q15139 TRUE Lung,Salivary_gland no_match TRUE Lung adenocarcinoma LUNG no_match 31495110 TRUE 30194880 FALSE YES In-frame TRUE Lung LUNG no_match 31025904|31025904 TRUE|TRUE 29725674|29725674 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE Protein Kinase D1 2 cribriform adenocarcinoma of the minor salivary glands, polymorphous adenocarcinoma of the minor salivary glands epithelial fusion translocation 13963 STRN3::ENSG00000248975 ENSG00000196792.12::ENSG00000248975.2 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- ENSG00000248975 ENSG00000248975.2 lncRNA - + chr14:29952397-30297043:- chr14:30033713:+ chr14:30421603-30766249:- chr14:30502919:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' low none Striatin_family(23%)| Striatin(0%)| 1 1 0 331 4 ENST00000355683.9 unknown upstream upstream mismatches(1) GGCCTTTCGCCCGGGGGGAACGGAGCGGCGGGCGGCGGGGGgCCTCCGGCCTCCGAGGGAGgGGGgCCCGCGGCAGGgCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCACTACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|AGGATACAGTGaAGGATTCAGAGGTCGTAGAAGATGGTGGAGTCTCTGGATGGAAGGAAGCTGGGTCTCTAAATCACAAGGTGGAAGACGACTCACCA GLSPGGNGAAGGGGPPASEGgGPAAGPELSRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQ|riq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13965 G2E3::AKAP6 ENSG00000092140.16::ENSG00000151320.11 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA G2E3 ENSG00000092140.16 protein_coding + + chr14:30559158-30620064:+ chr14:30559272:+ chr14:31028364-31089270:+ chr14:31028478:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32433460:+ chr14:32798504-33306890:+ chr14:32902666:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Spectrin_repeat(100%) |Spectrin(100%) 0 1 0 780 52 ENST00000206595.11 ENST00000280979.9 downstream upstream none CTCGCGGTCGGCGTGCCCCGACGTACAGCGGGCCGGGAAAAGTGGCACTGAGGCTCTGGAACTTCTGCCCAGCTCTCCTTG|CTGTTTTGGAAAGAAGTGAGGTTTAGACTTCTCCATGTTAACCATGAGCGTGACACTTTCCCCCCTGAGGTCACAGGACCTGGATCCCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13966 AKAP6::G2E3 ENSG00000151320.11::ENSG00000092140.16 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32546999:+ chr14:32798504-33306890:+ chr14:33016205:+ G2E3 ENSG00000092140.16 protein_coding + + chr14:30559158-30620064:+ chr14:30581076:+ chr14:31028364-31089270:+ chr14:31050282:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Spectrin_repeat(1%)|HECT-domain_(ubiquitin-transferase)(100%),PHD-like_zinc-binding_domain(100%) Spectrin(0%)|HECT(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%) 0 1 0 16 306 ENST00000280979.9 ENST00000553504.5 downstream upstream none CAGAAACTGATGCAAGATATTCAGCACCAAGACAACTATGAAGCCATATGGGAAAAAATAGAG|TAAAATGAATGAAAGTAAACCTGGTGACTCACAGAACCTTG___CTTGTGTTTTCTGTCGAAAACATGAcGACTGTCCTAATAAATACGGAGAAAAGAAAACTAAGGAGAAATGGAATCTCAC QKLMQDIQHQDNYEAIWEKIE|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13969 AKAP6::PRKD1 ENSG00000151320.11::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2454 TRUE 953 AKAP6 ENSG00000151320.11 protein_coding + - chr14:32329298-32837684:+ chr14:32532063:- chr14:32798504-33306890:+ chr14:33001269:- PRKD1 ENSG00000184304.17 protein_coding - - chr14:29576479-30191898:- chr14:29578360:- chr14:30045685-30661104:- chr14:30047566:- chr14:32336704 chr14:30119446 NA NA chr14:32805910 chr14:30588652 NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' low none |Protein_kinase_domain(10%) |Kinase-like(0%),PK_Tyr_Ser-Thr(0%),Pkinase(0%) 1 0 0 1 7 unknown ENST00000331968.11 upstream downstream none TGGAAATGCATTGCTTAACTTCAAGGAAAACACTCACCTCTTTTGTCTCTTCAGAGAAAGCTTGaAGAATGTCaGTCTGCCTAGTGTAGTTGCCATTGGCG...GAATGGCACAGTCACTCTGaAAAACAG|CCATTGAcCTTATCAACAATTTGCTGCAAGTAAAAATGAGAAAGCGCTACAGTGTGGATAAGACCTTGAGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase D1 CAMK PKD Q15139 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Protein Kinase D1 2 cribriform adenocarcinoma of the minor salivary glands, polymorphous adenocarcinoma of the minor salivary glands epithelial fusion translocation 13970 AKAP6::PRKD1 ENSG00000151320.11::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2454 TRUE 953 AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32433817:+ chr14:32798504-33306890:+ chr14:32903023:+ PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:30033715:+ chr14:30045685-30661104:- chr14:30502921:+ chr14:32739972,chr14:32490439 chr14:29874373,chr14:29699408 NA NA chr14:33209178,chr14:32959645 chr14:30343579,chr14:30168614 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none none none 1 0 0 39 4 ENST00000280979.9 unknown downstream upstream none CTCAGAGAGGGTCCGAGACCTAACCTATTCAGTCCAGCAGGATTCGGACAGCAAGCATGTGGATGTACATCTAGTTCAACTAAAG|GATACAGTGaAGGATTCAGAGGTCGTAGAAGATGG SERVRDLTYSVQQDSDSKHVDVHLVQLK|dtvkdsevved NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13971 AKAP6::PRKD1 ENSG00000151320.11::ENSG00000184304.17 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2454 TRUE 953 AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32329408:+ chr14:32798504-33306890:+ chr14:32798614:+ PRKD1 ENSG00000184304.17 protein_coding - - chr14:29576479-30191898:- chr14:30047787:- chr14:30045685-30661104:- chr14:30516993:- chr14:32458241,chr14:32336756 chr14:30083810,chr14:30119446 NA NA chr14:32927447,chr14:32805962 chr14:30553016,chr14:30588652 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) |C1_1(100%),Kdo(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 0 0 20 9 ENST00000280979.9 ENST00000549503.1 downstream downstream none ATTGTCTCAGGCTCCACTGGAAATGCAGCAAGGATTCCTAGCACATCCCAGTTGCCATAGCAACAGCAGTCTTTCCCATAATGAGCTGCATCATCTGAACT...TGCTGTAAACATCAAAAGAAGACGGTGGGATCAGGAGATG|TTTCTCTTGCTGCCATGATGTAAGAAGTGCCTTTCACCTCTCACCATGATTCTGAGCCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase D1 CAMK PKD Q15139 TRUE Skin no_match TRUE Skin Cutaneous Melanoma SKIN no_match 33069998|33069998 FALSE|FALSE 30095762|30069023 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Protein Kinase D1 2 cribriform adenocarcinoma of the minor salivary glands, polymorphous adenocarcinoma of the minor salivary glands epithelial fusion translocation 13972 HECTD1::ENSG00000258580 ENSG00000092148.14::ENSG00000258580.1 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2455 TRUE 954 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31205797:- chr14:31569323-31677010:- chr14:31675003:- ENSG00000258580 ENSG00000258580.1 lncRNA - - chr14:32373337-32417974:- chr14:32385144:- chr14:32842543-32887180:- chr14:32854350:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 1 0 0 723 6 ENST00000553700.5 ENST00000557371.1 upstream downstream none CTAATAGCCCTTGAACAGCTATGCATGCTGCTTTTGATGTCTGACAACGTGGATCGTTGTTTTGAAAC|AGTGTCATGAGGCAAGATGGAGTTTCTTATTGAAG LIALEQLCMLLLMSDNVDRCFEt|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13973 HECTD1::ENSG00000258580 ENSG00000092148.14::ENSG00000258580.1 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2455 TRUE 954 HECTD1 ENSG00000092148.14 protein_coding - - chr14:31100117-31207804:- chr14:31207391:- chr14:31569323-31677010:- chr14:31676597:- ENSG00000258580 ENSG00000258580.1 lncRNA - - chr14:32373337-32417974:- chr14:32385144:- chr14:32842543-32887180:- chr14:32854350:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 0 504 6 ENST00000553700.5 ENST00000557371.1 upstream downstream none CCGGCGGCCTGTTGGGAGCTGGATCGGAGCGGTTTGGAACGACAAGCCCGA|AGTGTCATGAGGCAAGATGGAGTTTCTTATTGAAGGTGAAGGCCAAGCAA...TGTGCAGAAAATATGGAGCATTTTAAATTGACCAATCTTAAGTAAGTGAAGAAGACAAAGTTGGAAAGGTAAGTTAGAGTCATATCACGGATGACTGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13974 STRN3::ENSG00000258580 ENSG00000196792.12::ENSG00000258580.1 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- ENSG00000258580 ENSG00000258580.1 lncRNA - - chr14:32373337-32417974:- chr14:32385144:- chr14:32842543-32887180:- chr14:32854350:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Striatin_family(23%)| Striatin(0%)| 0 1 0 331 6 ENST00000355683.9 ENST00000557371.1 upstream downstream none CTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGCAG|AGTGTCATGAGGCAAGATGGAGTTTCTTATTGAAGGTGAAGGCCAAGCAAGACCAGCGACAGCATCATGACAG___AGCATCTCATGGAACTAGTGATCTACAAAATACTTTGGAAGTCCTAGTACAGTTTGAGCTTGTGCAGAAAATAT RFEMERAHWEVERAELQ|svmrqdgvsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13975 NUBPL::SCFD1 ENSG00000151413.17::ENSG00000092108.22 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2456 TRUE 955 NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31673574:+ chr14:31959162-32330430:+ chr14:32142780:+ SCFD1 ENSG00000092108.22 protein_coding + + chr14:30622291-30737694:+ chr14:30670256:+ chr14:31091497-31206900:+ chr14:31139462:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none NUBPL_iron-transfer_P-loop_NTPase(43%)|Sec1_family(59%) AAA_31(100%),CbiA(38%),MipZ(39%),ParA(37%)|Sec1(62%) 1 0 0 489 1253 ENST00000281081.12 ENST00000678124.1 downstream upstream mismatches(2) AATGAGGCCTCTCTTGAATTATGGTATTGCTTG___TATGTCTATGGGCTTTCTGGTTGAAGAAAGTGAACCAGTAGTTTGGAGAGGCCTTATGGTAATGTCGGCCATTGAGAAATTGTTGAGGCAG|GATTTCCATTTAAACAGGGTTAATTTGG MRPLLNYGIACMSMGFLVEESEPVVWRGLMVMSAIEKLLRQ|DFHLNRVNL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 32034254 FALSE 31163979 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13976 NUBPL::SCFD1 ENSG00000151413.17::ENSG00000092108.22 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2456 TRUE 955 NUBPL ENSG00000151413.17 protein_coding + + chr14:31489956-31861224:+ chr14:31673574:+ chr14:31959162-32330430:+ chr14:32142780:+ SCFD1 ENSG00000092108.22 protein_coding + + chr14:30622291-30737694:+ chr14:30715924:+ chr14:31091497-31206900:+ chr14:31185130:+ chr14:31772696 chr14:30700361 NA NA chr14:32241902 chr14:31169567 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none NUBPL_iron-transfer_P-loop_NTPase(43%)|Sec1_family(15%) AAA_31(100%),CbiA(38%),MipZ(39%),ParA(37%)|Sec1(18%) 0 1 0 489 1671 ENST00000281081.12 ENST00000678124.1 downstream upstream mismatches(1) CTTATGGTAATGTCGGCCATTGAGAAATTGTTGAGGCAG|AATCTACCTGTTACTCGTATTTTGGACAATCTTATGGAGATGAAGTCAAACCCC___GAAACTGATGACTATAGATATTTTGATC LMVMSAIEKLLRQ|NLPVTRILDNLMEMKSNPETDDYRYFD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 32034254 FALSE 31163979 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13978 ARHGAP5::STRN3 ENSG00000100852.14::ENSG00000196792.12 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2457 FALSE NA ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32094386:+ chr14:32545320-32628934:+ chr14:32563592:+ STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30956242:- chr14:31363005-31495607:- chr14:31425448:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none FF_domain(100%),Ras_family(100%),RhoGAP_domain(0%),p190-A_and_-B_Rho_GAPs_FF_domain(100%)|Striatin_family(76%),WD_domain__G-beta_repeat(100%) FF(100%),Ras(100%),RhoGAP(21%),RhoGAP-FF1(100%),RhoGAP_pG1_pG2(8%)|Striatin(11%),WD40(100%) 0 1 0 2619 533 ENST00000345122.8 ENST00000355683.9 downstream downstream none AGATGATAAGAAGATGAAGAAGAAAACCCACAAAGTGAAAGAAGATAAAAAG|GCCCGGATTGCATTTCTACAAGGCGAAAGAAAAGGTCAAGAGAACCTGAAGAAGGACTTAGTAAGAAGAATAAAGATGTTAGAGTATGCATTAAAACAAGAAAG___GGCAAAATATCAC DDKKMKKKTHKVKEDKK|ARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 13987 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128423593:- chr8:129417515-129576925:- chr8:129435839:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 9 6 281 8355 3947 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(40),mismappers(6),mismatches(16) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAACAAGATCTGCACTGAATTATATG___CCACAGGGAGCCAGGATAGGAGGACAACATGGTGGATCCAGCATGGAACTTACAACTGAGGCTAGTTTGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13989 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128423593:- chr8:129417515-129576925:- chr8:129435839:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 293 1173 3947 ENST00000657667.1 ENST00000520206.5 downstream downstream duplicates(33),mismappers(7),mismatches(16) TCTGCCCTCCA___...TAAAGCTCTGATCAGTCAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAACAAGATCTGCACTGAATTATATG___CCACAGGGAGCCAGGATAGGAGGACAACATGGTGGATCCAGCATGGAACTTACAACTGAGGCTAGTTTGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13992 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128414408:- chr8:129417515-129576925:- chr8:129426654:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 56 1173 3091 ENST00000657667.1 ENST00000520206.5 downstream downstream duplicates(5),mismatches(3) CAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GACATGGCACCAAATCTCATGAGAGTGACAATAAGCTAGAACAGAAGTTTTGGAAAGCCAAAGAAAAGACTGTAACTGCACACAATAAgCAGAAAACATTTGTGCTTTCTGTCTCCATCTATCACCCAAACAGTCAAACCTGGAGAAAACTACTTTTCCTCTCTACACCAACATGCATGCTATTTGCATAACACA___TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13993 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128414408:- chr8:129417515-129576925:- chr8:129426654:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 0 54 8355 3091 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(5),mismatches(3) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GACATGGCACCAAATCTCATGAGAGTGACAATAAGCTAGAACAGAAGTTTTGGAAAGCCAAAGAAAAGACTGTAACTGCACACAATAAgCAGAAAACATTTGTGCTTTCTGTCTCCATCTATCACCCAAACAGTCAAACCTGGAGAAAACTACTTTTCCTCTCTACACCAACATGCATGCTATTTGCATAACACA___TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13994 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 5 36 8355 2856 ENST00000667305.1 ENST00000520206.5 downstream downstream duplicates(5),mismatches(2) CCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13995 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 38 1173 2856 ENST00000657667.1 ENST00000520206.5 downstream downstream duplicates(4),mismatches(2) CAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGaGTCTGGGAGAAACCTCGTGGCgTG...CATTATTTGAGATGAGTTACATCTTGGAG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13996 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 38 543 2856 ENST00000664995.1 ENST00000520206.5 downstream downstream duplicates(4),mismatches(2) CAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGaGTCTGGGAGAAACCTCGTGGCgTG...ATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13997 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2458 TRUE 956 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 38 432 2856 ENST00000654105.1 ENST00000520206.5 downstream downstream duplicates(4),mismatches(2) GCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 13998 PON2::TANGO6 ENSG00000105854.13::ENSG00000103047.8 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PON2 ENSG00000105854.13 protein_coding - - chr7:95404862-95435329:- chr7:95416242:- chr7:95034174-95064641:- chr7:95045554:- TANGO6 ENSG00000103047.8 protein_coding + - chr16:68843531-69085182:+ chr16:68970129:- chr16:68877434-69119085:+ chr16:69004032:- chr7:95414082,chr7:95414084 chr16:68973099,chr16:68973098 NA NA chr7:95043394,chr7:95043396 chr16:69007002,chr16:69007001 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 195 146 289 1293 693 ENST00000633192.1 unknown upstream downstream duplicates(96),low_entropy(1),mismappers(2),mismatches(22),multimappers(21) CGCCCACGGAGCTGCTGGCCAGGCCGGAGCGAGGCAGCGCGCCCGGCTCCCGCGCCATGGGGCGGCTGGTGGCTGTGGGCTTGCTGGGGATCGCGCTGGCGCTCCTGGGCGAGAGGCTTCTGGCACTCAG___AAATCGACTTAAAGCCTCCAGAGAAGTAGAATCTGTAGACCTTCCACACTGCCACCTGATTAAAGGAATTG___AAGCTGGCTCTGAAGATATTGACATACTTCCCAATGGTCTGGCTTTTTTTAGTGTG|GTGTGAACTTGTATCCCAGGCTGGCCAGTTAGGATCTTCCATTCCATCCCCACCACCATGACTGGTTCAGGAACAGGGAATGAGATTCGATCCTGAAACCCACATTGACACTACTGGGAAAGATAAATTCCCCTCCCCACCACCCATTGAAGAGACTAATCTGGAGCTGCCAGTGGCCACCATGTGGAAAAAGCCCACACAAGAATGACACCAACACAGAGGGAGAGCCAGCCTGAGAGGGAGGGAGAAGAAGAAGAAGAGA PTELLARPERGSAPGSRAMGRLVAVGLLGIALALLGERLLALRNRLKASREVESVDLPHCHLIKGIEAGSEDIDILPNGLAFFSV|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14000 ZRANB2::DNAI4 ENSG00000132485.14::ENSG00000152763.17 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2459 FALSE NA ZRANB2 ENSG00000132485.14 protein_coding - - chr1:71063291-71081289:- chr1:71069276:- chr1:71528974-71546972:- chr1:71534959:- DNAI4 ENSG00000152763.17 protein_coding - - chr1:66812885-66924856:- chr1:66814180:- chr1:67278568-67390539:- chr1:67279863:- chr1:71067336,chr1:71067341 chr1:66840955,chr1:66840957 NA NA chr1:71533019,chr1:71533024 chr1:67306638,chr1:67306640 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Zn-finger_in_Ran_binding_protein_and_others(100%)| zf-RanBP(100%)| 0 1 0 885 34 ENST00000370920.8 ENST00000371026.8 upstream downstream none CTTCCAGTTCGCAGTCAAGATCTCGTTCCAGTTCCAGAGAACGTTCGAGATCTCGTGGGTCGAAATCAAG|GGAGATATAATGGATACTTTGCTTGGATCCAAGTCAAACCAATCAGCATAATTCATCATTCCTAATATTTTTCTTGTAGTTGTTTTAAAAAAGGAAT SSSQSRSRSSSRERSRSRGSKSr|ei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14003 ANKRD11::ENSG00000267360 ENSG00000167522.17::ENSG00000267360.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2461 TRUE 957 ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ENSG00000267360 ENSG00000267360.6 protein_coding - - chr19:37093019-37210512:- chr19:37207254:- chr19:37583921-37701414:- chr19:37698156:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site translocation high none none |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-H2C2_2(100%),zf-met(100%) 5 13 1 113 42 ENST00000301030.10 ENST00000590245.5 upstream downstream duplicates(3),mismatches(2),multimappers(1) GCATGGGCAGCGCCCGCGCCCCGCCGCTGAGCCGTCGCGGAGCCGCGCAGCCCTCGGAGCACG___AATATATACAGCCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|GTTCTTGGGTGTCTCTGGGGAGTCCCTGGGCCAGACCTTCCTCCAGACTCCAGCCCACCTCTTCGGAGCAGCTCTGCTGAGTTCACAGATGACCACTAAACTTCAGGCACCCTAGACAAAAAGGGTTGAGATCCAGTGTGGCCATGCCAGCTAGTTGGACCTCACCCCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG___...GATCAGTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14004 ANKRD11::ENSG00000267360 ENSG00000167522.17::ENSG00000267360.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2461 TRUE 957 ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ENSG00000267360 ENSG00000267360.6 protein_coding - - chr19:37093019-37210512:- chr19:37170054:- chr19:37583921-37701414:- chr19:37660956:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none none |KRAB(96%),zf-C2H2(40%),zf-C2H2_6(36%),zf-H2C2_2(100%),zf-met(25%) 1 1 0 113 259 ENST00000646166.1 ENST00000585860.2 upstream downstream none CCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|GTTTCTGGGTGTCTCTGGGGAGCCCCTGGGCCAGATTTTCCTCTAGACTC...TGCCAGCTAATTGGACCTCACCTCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG___TGTTAACCTTGATGCCTGAAAGAACTGGAA MES|vsgclwgapgpdfpld NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14005 ANKRD11::ENSG00000267360 ENSG00000167522.17::ENSG00000267360.6 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2461 TRUE 957 ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ENSG00000267360 ENSG00000267360.6 protein_coding - - chr19:37093019-37210512:- chr19:37190150:- chr19:37583921-37701414:- chr19:37681052:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-H2C2_2(100%),zf-met(100%) 0 1 0 113 82 ENST00000646166.1 ENST00000585860.2 upstream downstream none ATATATACAGCCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|GGATCAGTGTCCTTCAG...GAGACCTACAGCCACCTGCTCTCAGTAG___GGTATCAAGTTCCTAAACCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAG MES|GSVSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14006 ANKRD11::ZNF585B ENSG00000167522.17::ENSG00000245680.11 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1371 TRUE 2462 TRUE 958 ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ZNF585B ENSG00000245680.11 protein_coding - - chr19:37181579-37218153:- chr19:37207254:- chr19:37672481-37709055:- chr19:37698156:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site translocation high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 5 12 1 113 42 ENST00000301030.10 ENST00000532828.7 upstream downstream duplicates(3),mismatches(2),multimappers(1) GCATGGGCAGCGCCCGCGCCCCGCCGCTGAGCCGTCGCGGAGCCGCGCAGCCCTCGGAGCACG___AATATATACAGCCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|GTTCTTGGGTGTCTCTGGGGAGTCCCTGGGCCAGACCTTCCTCCAGACTCCAGCCCACCTCTTCGGAGCAGCTCTGCTGAGTTCACAGATGACCACTAAACTTCAGGCACCCTAGACAAAAAGGGTTGAGATCCAGTGTGGCCATGCCAGCTAGTTGGACCTCACCCCAGAAATCCTCAGCCCTGGCTCCAGAGGATCATGGCAGCTCCTATGAG___...GATCAGTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14007 ANKRD11::ZNF585B ENSG00000167522.17::ENSG00000245680.11 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2462 TRUE 958 ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ZNF585B ENSG00000245680.11 protein_coding - - chr19:37181579-37218153:- chr19:37190150:- chr19:37672481-37709055:- chr19:37681052:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 0 113 82 ENST00000646166.1 ENST00000532828.7 upstream downstream none ATATATACAGCCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|GGATCAGTGTCCTTCAG...GAGACCTACAGCCACCTGCTCTCAGTAG___GGTATCAAGTTCCTAAACCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAG MES|GSVSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14009 ADIPOR2::ZNF565 ENSG00000006831.10::ENSG00000196357.12 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2463 TRUE 959 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ ZNF565 ENSG00000196357.12 protein_coding - - chr19:36182276-36246257:- chr19:36195156:- chr19:36673178-36737159:- chr19:36686058:- chr12:1751417 chr19:36219579 NA NA chr12:1860583 chr19:36710481 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(76%),zf-C2H2_6(67%) 2 1 1 212 101 ENST00000357103.5 ENST00000355114.9 downstream downstream duplicates(1),mismatches(1) GGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|GGACTGGTGACATTCAGGGACGTGGCCATAGAGTTCTCTCTGGAAGAATGGAAGTGCCTG...GATTTTAGAGCTGACTGGGAATGCGAAGGCCAGTTTGAGAGACAAGTCAATGAAGAGTGCTATTTTAAGCAAGTGAACGTCACCTATGGACATATGCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14010 ADIPOR2::ZNF565 ENSG00000006831.10::ENSG00000196357.12 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2463 TRUE 959 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691191:+ chr12:1797740-1897840:+ chr12:1800357:+ ZNF565 ENSG00000196357.12 protein_coding - - chr19:36182276-36246257:- chr19:36202050:- chr19:36673178-36737159:- chr19:36692952:- chr12:1751417 chr19:36219579 NA NA chr12:1860583 chr19:36710481 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(76%),zf-C2H2_6(67%) 0 2 1 189 63 ENST00000357103.5 ENST00000355114.9 downstream downstream duplicates(1),mismatches(3) CGGCGGTCGCTGTCGCGGCGGCGAGAGCGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCG|GACTCTGCACTTGTCCAAGAGAAGAATCCAGAGAAATCAGAGCAGGTCAAATAGTTCTAAAAGCCATGGCCCAG___GGACTGGTGACATTCAGGGACGTGGCCATAGAGTTCTCTCTGGAAGAATGGAAGTGCCTGGAACCTGCTCAGAGGGACTTGTACAGGGAGGTGACTCTGGAGAACTTTGGTCACTTGGCCTCACTAG___GACTCTCCATTTCTAAGCCTGATGTCGTCTCCTTATTGGAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14012 ADIPOR2::ZNF565 ENSG00000006831.10::ENSG00000196357.12 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2463 TRUE 959 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691191:+ chr12:1797740-1897840:+ chr12:1800357:+ ZNF565 ENSG00000196357.12 protein_coding - - chr19:36182276-36246257:- chr19:36195156:- chr19:36673178-36737159:- chr19:36686058:- chr12:1751417 chr19:36219579 NA NA chr12:1860583 chr19:36710481 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(76%),zf-C2H2_6(67%) 0 1 1 189 101 ENST00000357103.5 ENST00000355114.9 downstream downstream duplicates(1),mismatches(1) GGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCG|GGACTGGTGACATTCAGGGACGTGGCCATAGAGTTCTCTCTGGAAGAATGGAAGTGCCTGGAACCTGCTCAGAGGGACTTGTACAGGGAGGTGACTCTGGAGAACTTTGGTCACTTGGCCTCACTAG___GACTCTCCATTTCTAAGCCTGATG...CTGGAGGGCTCCGATTTTAGAGCTGACTGGGAATGCGAAGGCCAGTTTGAGAGACAAGTCAATGAAGAGTGCTATTTTAAGCAAGTGAACGTCACCTATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14013 ADIPOR2::ZNF565 ENSG00000006831.10::ENSG00000196357.12 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2463 TRUE 959 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ ZNF565 ENSG00000196357.12 protein_coding - - chr19:36182276-36246257:- chr19:36202050:- chr19:36673178-36737159:- chr19:36692952:- chr12:1751417 chr19:36219579 NA NA chr12:1860583 chr19:36710481 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(76%),zf-C2H2_6(67%) 1 0 1 212 63 ENST00000357103.5 ENST00000355114.9 downstream downstream duplicates(1),mismatches(1) CGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCTCCGTTCCCCCCTCCTCCCCCCTCCCCTCAGCGGTGGCTCCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|GACTCTGCACTTGTCCAAGAGAAGAATCCAGAGAAATCAGAGCAGGTCAAATAGTTCTAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14014 ADIPOR2::ZNF565 ENSG00000006831.10::ENSG00000196357.12 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2463 TRUE 959 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ ZNF565 ENSG00000196357.12 protein_coding - - chr19:36182276-36246257:- chr19:36203542:- chr19:36673178-36737159:- chr19:36694444:- chr12:1751417 chr19:36219579 NA NA chr12:1860583 chr19:36710481 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation low none |KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(76%),zf-C2H2_6(67%) 0 0 0 212 14 ENST00000357103.5 ENST00000585994.1 downstream downstream mismatches(1) CGCGATTCCAGAAGCGGCATCGCGGCGGCGGCAGCGGCGGCGGCTACACCGGGCTTGGCCCCCTCCCTCCcCCcTTCCCCCCcCCcCCCCCCcCCCC...CCCAAGAAGTCCGAGACACGCGGTGAGGCGGCGACGGGCTCCGG|ATGTATaCCATTCACAGGACTTCGGACTCAGCAACTGCCAGCCTCACAGTCAATGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14048 PVT1::LINC00861 ENSG00000249859.14::ENSG00000245164.10 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00861 ENSG00000245164.10 lncRNA - + chr8:125859721-126292788:- chr8:126260417:+ chr8:126871965-127305033:- chr8:127272662:+ chr8:127841158,chr8:127841145,chr8:127841152,chr8:127841151,chr8:127841148 chr8:126139677,chr8:126139670,chr8:126139668,chr8:126139668,chr8:126139668 NA NA chr8:128853404,chr8:128853391,chr8:128853398,chr8:128853397,chr8:128853394 chr8:127151921,chr8:127151914,chr8:127151912,chr8:127151912,chr8:127151912 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 300 301 300 8287 2594 ENST00000651587.1 unknown downstream upstream duplicates(192),mismatches(82) GCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCCAGAGACCCTTGGCTGGTGACAACCCACCTGGGCCTCGCTCAGCCACACTGGTATGCCCCAGTGTTATAGCCTGTACCCACAATCAGCAGTTCCCAAGCTCTTGTACTGCACCCAAGAAGAATGAGGATATGGTGAACATTGAAGTGTGAGGAGGGTGGCCTGAATTTTATTGAGCGACGGAACAGCTCTCAGCAGAGGGGATGCAGTGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14049 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1372 TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 161 72 131 8287 442 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(54),low_entropy(3),mismappers(1),mismatches(15) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14050 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 5 133 490 442 ENST00000662410.1 ENST00000650971.1 downstream upstream duplicates(11),mismatches(11) GCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14051 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818999:+ chr8:128806772-129199347:+ chr8:128831245:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590707:+ chr8:128590718-128649112:+ chr8:128602952:+ NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site duplication medium none none none 1 0 133 199 442 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(13),mismatches(11) GGGACGAGGAGGGGCGACGACGAGCTGCGAGgAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGC...CTGAGTAGCTGGGACTTGCAGG|GTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14052 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 133 255 442 ENST00000523328.6 ENST00000650971.1 downstream upstream duplicates(11),mismatches(11) GCCGGGACGAGGAGGGGCGACGACtAGCTGCGAGCAAgGATGTGCCCCGGGACCCCCGGCACCTcCCAGTGGcTTTCCTTGCGGAAAGGATGTTGGCGG...CCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14053 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 133 165 442 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(13),mismatches(11) GCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTA...CGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14054 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2467 TRUE 960 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127629768:+ chr8:128590718-128649112:+ chr8:128642013:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 24 8287 164 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(1),mismatches(2) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTCATGTTGCATGTGGATGGCTGCAGCTCAGCAGCTGTAGAATCTGCACCACCTGcCTTATGCTGAGATCCAGCCTGGAGGAACACCCCTCTGTGGAATGTGGCACTCTCTTGGCAGAAAGAGCAAGAAAGCAGGCAGAAACTCATGAAGACTCTTAAAGGCTTCTGCTTGGGCACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14055 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1373 TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 81 65 198 8287 451 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(57),mismatches(11) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14056 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1374 TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 51 29 244 8287 76 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(42),mismatches(8) GCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAAC...TGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14057 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 0 254 255 76 ENST00000523328.6 ENST00000501396.5 downstream downstream duplicates(37),mismatches(8) CACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGG...ATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14058 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818999:+ chr8:128806772-129199347:+ chr8:128831245:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323153:- chr8:128302053-128494384:- chr8:128335398:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown intron exon/splice-site inversion medium none none none 0 1 255 199 76 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(37),mismatches(8) GTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GCTGGAGTGCAGTGGCGTGATCATAGCTCA...CCTGCCTCAGCCTCCTGAGTAGCTGGGACTTGCAGG|TTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14059 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 252 490 76 ENST00000657667.1 ENST00000501396.5 downstream downstream duplicates(37),mismatches(8) CGGCCAGATCTGCCCTCCA___...TATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14060 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 4 206 255 451 ENST00000656491.1 ENST00000523825.2 downstream downstream duplicates(26),mismatches(9) TGGCaGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCC...ATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14061 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 3 204 490 451 ENST00000657667.1 ENST00000523825.2 downstream downstream duplicates(26),mismatches(8) CGGCCAGATCTGCCCTCCA___...TATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14062 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 0 0 165 451 ENST00000651587.1 ENST00000502082.5 downstream downstream mismatches(1) GCCGGGACGAGGAGGGGCGACGACGAGCTGCGgGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTC...CAAcGGCCCAACTGGAATTCCACTTACGG|GTTGCAAGAAtGCTCAAtTAtCtTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAtGCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14063 ENSG00000226197::ZDHHC21 ENSG00000226197.4::ENSG00000175893.12 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2469 TRUE 962 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13729675:+ chr9:13386129-13836570:+ chr9:13729674:+ ZDHHC21 ENSG00000175893.12 protein_coding - - chr9:14611071-14693432:- chr9:14619682:- chr9:14611069-14693430:- chr9:14619680:- NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site inversion high none |DHHC_palmitoyltransferase(7%) |DHHC(0%) 58 47 121 98 529 unknown ENST00000380916.9 downstream downstream duplicates(16),mismatches(8) GGGGACTCAGATAGAGACACTCCACGTGGAAGACCACAGGAAAAGAAAGTGGAGTACAGCTGGAGTAAAATGAATTGTCTGCATCATGGGATGTTCCATCACATTTTGGCTTTGTAAAGAAACAAAACACACATGTACCCAACAATGAGTCAATCTGCCAAGGCCAGAAGTTGTGAAGCCATCTTTTGAAAGCACCAGTTTGC|GATACAACATCTATTGAAAAGATGTCAAACTGTTGTGAAGATAT___ATCGAGGCCCCGAAAGCCATGGCAGCAGACCTTCTCAGAAGTTTTTGGCACTCGTTGGAAGATCCTGTGGTTCATTCCTTTCAGGCAGAGGCAACCACTGCGAGTTCCCTACCACTTTGCCAATCATGTCTAAACAGATGGATGGTGGGCACAGATGGGTCCTCCATGCTGGCAATGCGTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14064 ENSG00000226197::ZDHHC21 ENSG00000226197.4::ENSG00000175893.12 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2469 TRUE 962 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ ZDHHC21 ENSG00000175893.12 protein_coding - - chr9:14611071-14693432:- chr9:14619682:- chr9:14611069-14693430:- chr9:14619680:- chr9:13729732 chr9:14629195 NA NA chr9:13729731 chr9:14629193 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |DHHC_palmitoyltransferase(7%) |DHHC(0%) 0 5 0 8 529 ENST00000664438.1 ENST00000380916.9 downstream downstream none TTCTTGCCTTGGTCTACTGGAAGAATCAGATCACAG___...GCAATGTGTGAACGATCCAGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|GATACAACATCTATTGAAAAGATGTCAAACTGTTGTGAAGATAT___...GTGGTTCATTCCTTTCAGGCAGAGGCAACCACTGCGAGTTCCCTACCA?TTTGCCAATCATGTCTAAACAGATGGATGGTGGGCACAGATGGGTCCTCCATGCTGGCAATGCGTTACAGGTTTTATGATAATAGAACTATGACAGTCTTCAAGTCAAT...___CCATGTGACATGCCTGCTCCTACTCTGCCTTCCATCATGAATAAAAGCTTCTTGAGGCCTCACCAGAAGCCAAGCAGATGCTGGTGCCATGCTTATACAGCCTGCAGAGCCATGAGCCAAATAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14065 ENSG00000226197::ZDHHC21 ENSG00000226197.4::ENSG00000175893.12 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2469 TRUE 962 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ ZDHHC21 ENSG00000175893.12 protein_coding - + chr9:14611071-14693432:- chr9:14646873:+ chr9:14611069-14693430:- chr9:14646871:+ chr9:13729732,chr9:13729732,chr9:13729732 chr9:14629133,chr9:14629124,chr9:14629120 NA NA chr9:13729731,chr9:13729731,chr9:13729731 chr9:14629131,chr9:14629122,chr9:14629118 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' low none none none 1 0 0 8 35 ENST00000664438.1 unknown downstream upstream none GGGGAAGCTGCATCTGAAATCCAGGACTTCTAGATCCTGGGTCAACTG___CAATGTGTGAACGATCCAGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|CAGTATGCAAGTTTCTTGAAGAgGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14080 NFIB-AS1::PCAT1 ENSG00000225472.2::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1378 TRUE 2474 TRUE 963 NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14317345:+ chr9:14317072-14358489:+ chr9:14317344:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589192:+ chr8:127568568-128431295:+ chr8:127601437:+ chr9:14329934,chr9:14329698,chr9:14329931,chr9:14329928,chr9:14329758,chr9:14329900 chr8:126577163,chr8:126577123,chr8:126577160,chr8:126577154,chr8:126577106,chr8:126577154 NA NA chr9:14329933,chr9:14329697,chr9:14329930,chr9:14329927,chr9:14329757,chr9:14329899 chr8:127589408,chr8:127589368,chr8:127589405,chr8:127589399,chr8:127589351,chr8:127589399 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 30 16 18 250 93 ENST00000671131.1 ENST00000690964.1 downstream upstream duplicates(5),low_entropy(2),mismatches(11) CCCAGAACCAGCCGTTGTCCCCTGGCAAAAAGAGGCCCAGGGCTGAGCCCTGGGCAAGTGTCTCCCGACATCGCTACCCCTCCTCCCTTTATTAGTTTCCCTTTCCCAACAGAAACCATTTCCTTCTGCCACCAAAACTAGGTTGCATCCAAAAGTTTTTCACAAGCTTAAAAAAGAAAAACGAAAAATTGACAAGTATTACACAGAAGAGCCCACAAAAGCTTCAGCAACACCAAGGGCGAAGAAGCAGCGTCAGATCCAG|GCTCTCACAAAAGTCACCGCGTTTGTGTAGGTAACTAAGGCCTACCGAAACCAGTCAGCCCTAAGTGCACACAGGAGAACCATGGAGTTGGAGGAAAAG___GCACTCAATGGATTGGATAATGCCTGCCCACATTAGTGAGAGTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14081 PCAT1::NFIB-AS1 ENSG00000253438.5::ENSG00000225472.2 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1379 TRUE 2475 TRUE 964 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589290:+ chr8:127568568-128431295:+ chr8:127601535:+ NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14357152:+ chr9:14317072-14358489:+ chr9:14357151:+ chr8:126608420,chr8:126608538,chr8:126608666 chr9:14329841,chr9:14330000,chr9:14330152 NA NA chr8:127620665,chr8:127620783,chr8:127620911 chr9:14329840,chr9:14329999,chr9:14330151 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 2 11 3 97 696 ENST00000645463.1 ENST00000671131.1 downstream upstream duplicates(1),mismatches(4),multimappers(2) CAG___GCTCTCACAAAAGTCACCGCGTTTGTGTAGGTAACTAAGGCCTACCGAAACCAGTCAGCCCTAAGTGCACACAGGAGAACCATGGAGTTGGAGGAAAAG|GTCTGCAGGACACACCAAAGAACTCCTCCAAGTCACACAAGGGAGAAAATTAACTTCATTGGCTTCTATCAGGAAAGCTATTTTTTTTTTCCTCTTCTTTCCTGCAAGTTTCCCAAACCCCATGACTCTGATTTCCAGGTCAGAGACTAAGGTTTTATTTTTCTTACTCTGTATACTTTATATGTGGAGAGTCCCTGAAGGAACACTGTGATGGGCTGATTACTGTGAGCCAGTTGTGGGCCAGACCTGGCCTCAGGTGCTGCAAAGGGAATTCAGTCACCCCTGTGCAGTGATCTGTGAGCCCCAAGTCAGATCCAACTTTTTCCTGATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14082 PCAT1::NFIB-AS1 ENSG00000253438.5::ENSG00000225472.2 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2475 TRUE 964 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127006618:+ chr8:127568568-128431295:+ chr8:128018863:+ NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14357152:+ chr9:14317072-14358489:+ chr9:14357151:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 1 2 3 109 696 ENST00000644627.1 ENST00000671131.1 downstream upstream mismatches(1),multimappers(2) GCAACCACAGGAAGAGCAGAAGTCTGCTGTGGAGCCGCCTGCATCCAAGTCCAGCTCTGCTGCTTGATGGGAATGGGCCCTTGGGACAGATTCTTCTCTTG...ATCCAGCCACCTCTTGGGATGCACACGTTTCTCTTCAACTGCGTGATGTGAACTGCGTCACATG|GTCTGCAGGACACACCAAAGAACTCCTCCAAGTCACACAAGGGAGAAAATTAACTTCATTGGCTTCTATCAGGAAAGCTATTTTTTTTTTCCTCTTCTTTCCTGCAAGTTTCCCAAACCCCATGACTCTGATTTCCAGGTCAGAGACTAAGGTTTTATTTTTCTTACTCTGTATACTTTATATGTGGAGAGTCCCTGAAGGAACACTGTGATGGGCTGATTACTGTGAGCCAGTTGTGGGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14083 NFIB-AS1::PCAT1 ENSG00000225472.2::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2474 TRUE 963 NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14317345:+ chr9:14317072-14358489:+ chr9:14317344:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126594344:+ chr8:127568568-128431295:+ chr8:127606589:+ chr9:14329934,chr9:14329698,chr9:14329931,chr9:14329928,chr9:14329758,chr9:14329900 chr8:126577163,chr8:126577123,chr8:126577160,chr8:126577154,chr8:126577106,chr8:126577154 NA NA chr9:14329933,chr9:14329697,chr9:14329930,chr9:14329927,chr9:14329757,chr9:14329899 chr8:127589408,chr8:127589368,chr8:127589405,chr8:127589399,chr8:127589351,chr8:127589399 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 0 1 3 250 88 ENST00000671131.1 ENST00000690964.1 downstream upstream mismatches(1) CAAAAAGAGGCCCAGGGCTGAGCCCTGGGCAAGTGTCTCCCGACATCGCTACCCCTCCTCCCTTTATTAGTTTCCCTTTCCCAACAGAAACCATTTCCTTCTGCCACCAAAACTAGGTTGCATCCAAAAGTTTTTCACAAGCTTAAAAAAGAAAAACGAAAAATTGACAAGTATTACACAGAAGAGCCCACAAAAGCTTCAGCAACACCAAGGGCGAAGAAGCAGCGTCAGATCCAG|GCACTCAATGGATTGGATAATGCCTGCCCACATTAGTGAGAGTGGATATTTTTACTCAGCCTACTGATTCAAATGCTAGTCTCTTCTGGAAACATCCTCACAGACACACTCAGAAATAATGTTTTACCAGCTATCTAGCCATCCCTTAACCCAGTCAAGTTGACACATAAAATTAACCATTACACCCTCCAAAATATTCTTATTTTGAAATTCTCGCCCCCAGTACTTCAGAATGTGATCTTATTCTTTAAAAGGATCCTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14085 LONRF1::TRMT9B ENSG00000154359.13::ENSG00000250305.9 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LONRF1 ENSG00000154359.13 protein_coding - - chr8:12721906-12756073:- chr8:12740874:- chr8:12579415-12613582:- chr8:12598383:- TRMT9B ENSG00000250305.9 protein_coding + - chr8:12945642-13031503:+ chr8:12985379:- chr8:12803151-12889012:+ chr8:12842888:- chr8:12738920,chr8:12738924 chr8:12986325,chr8:12986326 NA NA chr8:12596429,chr8:12596433 chr8:12843834,chr8:12843835 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RING-type_zinc-finger(100%)| TPR_16(100%),zf-RING_UBOX(1%)| 15 16 18 384 55 ENST00000398246.8 unknown upstream downstream duplicates(8),mismatches(8) CAGAGCGGAATCATATGCTGGTCTCCAAGAGTTTAAAGCAGCCATAGAAGATTTAAATGCAGTTCTTTTTCAACTTCCAGATTGGCCTGAG___GTCTACTTCAGGAAAGGAAAAGTACTCTGCGATGCTGGTTTTTTAGGTGATGCCTTACAACTCTTTCTTCAGTGCTTAGCCCTTGATGAAGATTTTGCACCTGCAAAGCTGCAAGTACAAAAG|AACTCCTTAATGATACACCAGAGAGATTACAATGGAAATGCTAAGGAAAGGAACAGCTGGCATCTCTCCTTGAAATCCTATGAGCAGAACAAATTCAGAGCTTCAAAACAACAAAATATGTTtCACCGGGAGAATACGATCCTCTCTGGAATCCCATCAGGGACTAGAAAGTTACCCCCGATAAACATGATGAAAGAAAGTGAACAACGTGAGGGGCGTTTATCTTAGC RAESYAGLQEFKAAIEDLNAVLFQLPDWPEVYFRKGKVLCDAGFLGDALQLFLQCLALDEDFAPAKLQVQK|nslmihqrdyngnakernswhlslksyeqnkfraskqqnmfhrentilsgipsgtrklppinmmkeseqregrls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14086 TVP23B::ULK2 ENSG00000171928.14::ENSG00000083290.20 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TVP23B ENSG00000171928.14 protein_coding + + chr17:18781111-18806714:+ chr17:18798943:+ chr17:18684424-18710027:+ chr17:18702256:+ ULK2 ENSG00000083290.20 protein_coding - + chr17:19770829-19867936:- chr17:19846787:+ chr17:19674142-19771249:- chr17:19750100:+ chr17:18804046 chr17:19818915 NA NA chr17:18707359 chr17:19722228 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none Eukaryotic_protein_of_unknown_function_(DUF846)(86%)| DUF846(64%)| 9 23 14 456 126 ENST00000307767.13 unknown downstream upstream duplicates(2),mismatches(2) TGTCACAGGTAGACTAATGGTTGGCCTACGTTGGTGGAATCACATTGATGAAGATGGAAAGAGCCATTGGGTGTTTGAATCTAGAAAG___GAGTCCTCTCAAGAGAATAAAACTGTGTCAGAGGCTGAATCAAGAATCTTTTGGTTGGGACTTATTGCCTGTCCAGTACTGTGGGTGATATTTGCcTTTAGTGCACTCTTCTCCTTCAGAGTAAAGTGGTTG|GACAGCAAGATGTTCTGTGGTTTGAGATCTCTGTGGATGATTCCTTTGCTGTGCAGGATTCGCATGGCAGCAGCAATCTGATGCAGAAACACTCTGATCGTGTCTTCACTGAGAGTCCCTTTCGCTGGTACAAAAGGAGTCACGTAAATATTTAAGCACACAAAATCAAATACCATCTGCATATTCCATCAACAGGATTGGGTTGTGAAGGAGAGCATGAAGGGAATGAGGAATTTGGATTCACATTTATTTATTTTTTTAACTTTAATAATTGAAGAC VTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWL|dskmfcglrslwmipllcrirmaaai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14087 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 10 31 5 498 82 ENST00000436443.5 ENST00000415387.1 upstream downstream duplicates(5),mismappers(4),mismatches(4) CGGGATCTGAGACTTCCAAAAAATGAAGCCGGCGACAGGACTTTGGGTCTGGGTGAGCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACCTCTCCCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCTAGTAGCTGGGACTACAGGTGCACGCTACCACGCCCAGGCAATTTTTGTATTTTTTGTAGAGACGGGGTTTTGCCATGTTGCCCAGTCTCGTCTTCTTCAACTCCTGGATTCAAGCAACCTGCC MKPATGLWVWVSLLVAAGTVQPSDSQS|alfkrakiwkqlkcsstgfhsvtqagvqwhrlsslqplpprlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 14088 MKNK2::ISG15 ENSG00000099875.16::ENSG00000187608.10 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MKNK2 ENSG00000099875.16 protein_coding - - chr19:2037465-2051244:- chr19:2041840:- chr19:2037464-2051243:- chr19:2041839:- ISG15 ENSG00000187608.10 protein_coding + + chr1:1001138-1014540:+ chr1:1008194:+ chr1:936518-949920:+ chr1:943574:+ chr19:2041418,chr19:2041421 chr1:1002821,chr1:1002818 NA NA chr19:2041417,chr19:2041420 chr1:938201,chr1:938198 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Protein_kinase_domain(81%)|Ubiquitin_family(100%) Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(84%)|Ubiquitin_2(100%),ubiquitin(100%) 20 8 12 758 95 ENST00000250896.9 ENST00000624697.4 upstream upstream duplicates(5),low_entropy(2) CCTTGGACTTTCTGCATAACAAAG___GCATCGCCCACAGGGACCTAAAGCCGGAAAACATCCTCTGTGAGCACCCCAACCAG___GTCTCCCCCGTGAAGATCTGTGACTTCGACCTGGGCAGCGGCATCAAACTCAACGGGGACTGCTCCCCTATCTCCACCCCGGAGCTGCTCACTCCG___TGCGGCTCGGCGGAGTACATGGCCCCGGAGGTAGTGGAGGCCTTCAGCGAGGAGGCTAGCATCTACGACAAGCGCTGCGACCTGTGGAGCCTGGGCGTCATCTTGTATATCCTACTCAGCGGCTACCCGCCCTTCGTGGGCCGCTGTGGCAGCGACTGCGGCTGGGACCGCGGCGAGGCCTGCCCTGCCTGCCAG|GAATCGCTTAATTCTGAAAGTCTGGTGAGAAGACACGGCGAGAATCGGGGTCCAGCACAGATGATGGCGACAGCGGAGAAGGGAAG___...CACTGCAACCTCCGCCTCCCAGGTTCAAGCA...TTCTCCTGCCTCAGCCTCCCAAG...___GGCTGGGACCTGACGGTGAAGATGCTGGCGGGCAACGAATTCCAGGTGTCCCTGAG LDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQ|eslnseslvrrhgenrgpaqmmataekg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE MAP kinase-interacting serine/threonine-protein kinase 2 CAMK MAPKAPK MNK Q9HBH9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14098 HELLS::TBC1D12 ENSG00000119969.16::ENSG00000108239.9 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1383 FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ TBC1D12 ENSG00000108239.9 protein_coding + + chr10:94402541-94536332:+ chr10:94493365:+ chr10:96162298-96296089:+ chr10:96253122:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 6 2 10 259 76 ENST00000348459.10 ENST00000225235.5 downstream upstream duplicates(2),mismatches(1) GCCGGCAGCGGTTGTGAGGAGTTAGCTCGCGGCATTGCAGGCTCTGAGAGGAGGGGACCCGGTTCCCGGGTGAGTGTCCAGGCATGCCAGCGGAACGGCCCGCGGGCAGCGGCG___GCTCGGAGGCTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACCCCGGCCATGCTAGAAGAGGAAGAACAGCTTGAAGCTGCTGGACTAGAGAGAGAGCGGAAGATGCTGGAAAAG|AAATCTTCCTGCCAAATCTGTGGAAGAAGCTTTACGTCACCGACAAGAATACGATGAGATGGTGGCTGAGGCTAAAAAACGAG___AAATTAAGGAAGCACATAAAAGAAAAAGAATCATGAAA MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEK|ksscqicgrsftsptrir* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96348147 FALSE 96281712 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14100 KCNC2::CAPS2 ENSG00000166006.14::ENSG00000180881.21 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1384 TRUE 2479 TRUE 965 KCNC2 ENSG00000166006.14 protein_coding - - chr12:75040077-75209839:- chr12:75051157:- chr12:75433857-75603619:- chr12:75444937:- CAPS2 ENSG00000180881.21 protein_coding - - chr12:75275979-75390928:- chr12:75293367:- chr12:75669759-75784708:- chr12:75687147:- chr12:75050827,chr12:75050831 chr12:75297030,chr12:75297031 NA NA chr12:75444607,chr12:75444611 chr12:75690810,chr12:75690811 NA NA sense sense out-of-frame CDS CDS/splice-site duplication high none BTB/POZ_domain(100%),Ion_transport_protein(21%)| BTB_2(100%),Ion_trans(99%)|EF-hand_8(100%) 3 1 9 74 32 ENST00000549446.6 ENST00000699294.1 upstream downstream duplicates(4) CTGCACTGCCCCGCAGACGTGTGCGGGCCGCTCTTCGAGGAGGAGCTGGCCTTCTGGGGCATCGACGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTA...GGCCGCTGGAGGAGGCTGCAGCCCCGCATGTGGGCCCTCTTCGAAGACCCCTACTCGTCCAGAGCCGCCAGG___TTTATTGCTTTTGCTTCTTTATTCTTCATCCTGGTTTCAATTACAACTTTTTGCCTGGAAACACATGAAGCTTTCAATATTGTTAAAAACAAGACAGAACCAGTCATCAATGGCACAAGTGTTGTTCTACAGTATGAAATTGAAACGGATCCTGCCTTGAC|GGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAA___AACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAG___ATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTT GRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSVVLQYEIETDPALt|vqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14101 KCNC2::CAPS2 ENSG00000166006.14::ENSG00000180881.21 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1385 TRUE 2479 TRUE 965 KCNC2 ENSG00000166006.14 protein_coding - - chr12:75040077-75209839:- chr12:75207297:- chr12:75433857-75603619:- chr12:75601077:- CAPS2 ENSG00000180881.21 protein_coding - - chr12:75275979-75390928:- chr12:75293367:- chr12:75669759-75784708:- chr12:75687147:- chr12:75050827,chr12:75050831 chr12:75297030,chr12:75297031 NA NA chr12:75444607,chr12:75444611 chr12:75690810,chr12:75690811 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BTB/POZ_domain(100%),Ion_transport_protein(0%)| BTB_2(100%),Ion_trans(0%)|EF-hand_8(100%) 4 3 6 172 32 ENST00000549446.6 ENST00000699294.1 upstream downstream duplicates(3) CTGGGGCATCGACGAGACCGACGTGGAGCCCTGCTGCTGGATGACCTACCGGCAGCACCGCGACGCCGAGGAGGCGCTGGACATCTTCGAGACCCCCGACCTCATTGGCGGCGACCCCGGCGACGACGAGGACCTGGCGGCCAAGAGGCTGGGCATCGAGGACGCGGCGGGGCTCGGGGGCCCCGACGGCAAATCTGGCCGCTGGAGGAGGCTGCAGCCCCGCATGTGGGCCCTCTTCGAAGACCCCTACTCGTCCAGAGCCGCCAGG|GGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAA___AACTGCTTCTAT...CTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGC WGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAAR|GATLTFLSSDHLSLPESIKENTLLKLRITNIDQIALDSLKTAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14103 APBA1::PTAR1 ENSG00000107282.9::ENSG00000188647.13 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1386 TRUE 2480 TRUE 966 APBA1 ENSG00000107282.9 protein_coding - - chr9:69427532-69672371:- chr9:69672153:- chr9:72042448-72287287:- chr9:72287069:- PTAR1 ENSG00000188647.13 protein_coding - - chr9:69709522-69760011:- chr9:69750950:- chr9:72324438-72374927:- chr9:72365866:- chr9:69593402,chr9:69593404,chr9:69593404 chr9:69759819,chr9:69759787,chr9:69759820 NA NA chr9:72208318,chr9:72208320,chr9:72208320 chr9:72374735,chr9:72374703,chr9:72374736 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Protein_prenyltransferase_alpha_subunit_repeat(100%) |PPTA(100%) 1 5 7 81 328 ENST00000265381.7 ENST00000340434.5 upstream downstream mismatches(7) CTGCGGTCCCGGCGGCGGCGGCGGCGGCGGCAGCTGCGGCGGGAGAAGATGGTGGCGCTGGAGGCAGCAGCGGCTGGAGCGG?GCTTTATTCCCAGGCTTGGCACCAGCGCTGTCACTAGCGCCGCCTGCTCCCGCGGGCCCGCGGACCCAGCTGTCAGGCAAG|AGATGAAATTGGCCTGATCCCATGTCCTGAAGCTAGGTATAACCGGAGTCCCATAGTCCTGGTTGAAAACAAACTGGGTGTGGAGAGCTGGTGTGTCAAGTTCCTTTTACCATATGTCCACAACAAGCTCCTTTTGTACAGAACAAGAAAGCAATGGCTGAACAGAGATG___AATTGATAGATGTCACATGTACCCTGCTGCTTCTAAACCCAGA...CTACAACAGCTAATTCAGGAAACCTCCTTGCCTTCCTTTGTGACCAAAGGAAACTTGGGAACAATTCCCACAGAAAGGGCACAGCGACTCATACAAGAAGAGATGGAGGTCTGTGGTGAAGCAGCAGGGAGATACCCAAGCAACTATAATGCTTGGTCCCATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14104 APBA1::PTAR1 ENSG00000107282.9::ENSG00000188647.13 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1387 TRUE 2480 TRUE 966 APBA1 ENSG00000107282.9 protein_coding - - chr9:69427532-69672371:- chr9:69672153:- chr9:72042448-72287287:- chr9:72287069:- PTAR1 ENSG00000188647.13 protein_coding - - chr9:69709522-69760011:- chr9:69741858:- chr9:72324438-72374927:- chr9:72356774:- chr9:69593402,chr9:69593404,chr9:69593404 chr9:69759819,chr9:69759787,chr9:69759820 NA NA chr9:72208318,chr9:72208320,chr9:72208320 chr9:72374735,chr9:72374703,chr9:72374736 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Protein_prenyltransferase_alpha_subunit_repeat(100%) |PPTA(100%) 4 3 2 81 253 ENST00000265381.7 ENST00000340434.5 upstream downstream mismatches(5) CCGGCGGCGGCGGCGGCGGCGGCAGCTGCGGCGGGAGAAGATGGTGGCGCTGGAGGCAGCAGCGGCTGGAGCGGAGCTTTATTCCCAGGCTTGGCACCAGCGCTGTCACTAGCGCCGCCTGCTCCCGCGGGCCCGCGGACCCAGCTGTCAGGCAAG|AATTGATAGATGTCACATGTACCCTGCTGCTTCTAAACCCAGACTTTACCACTGCATGGAACGTGAG___GAAAGAGCTGATCCTCTCTGGCACTTTAAATCCAATTAAGGATTTACATCTGGGAAAACTCGCCTTAACCAAGTTTCCAAAG...GGCGATGGGTGCTACAACAGCTAATTCAGGAAACCTCCTTGCCTTCCTTTGTGACCAAAGGAAACTTGGGAACAATTCCCACAGAAAGGGCACAGCGACTCATACAAGAAGAGATGGAGGTCTGTGGTGAAGCAGCAGGGAGATACCCAAGCAACTATAATGCTTGGTCCCATCGCATCTGGGTTTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14105 NIN::TRIM9 ENSG00000100503.27::ENSG00000100505.14 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1388 FALSE NA FALSE NA NIN ENSG00000100503.27 protein_coding - - chr14:50719763-50831162:- chr14:50830464:- chr14:51186481-51297880:- chr14:51297182:- TRIM9 ENSG00000100505.14 protein_coding - - chr14:50975262-51096061:- chr14:51025360:- chr14:51441980-51562779:- chr14:51492078:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Fibronectin_type_III_domain(100%),SPRY_domain(100%) |SPRY(100%),fn3(100%) 1 10 0 21 428 ENST00000530997.7 ENST00000298355.7 upstream downstream duplicates(2) GGGACGCA___AGCGCTGGAGGCGGGCTGCCGGCTGTGCGGGCGCTCCGGAGAGACCGACAGAAG|AGCCAGCTCTCCCAGGCGCTGAACGGACTGTCAGACAGGGCCAAAGAAGCCAAGGAGTTTCTGGTACAGCTGCGCAACATGGTCCAGCAGATCCAG___GAGAACAGTGTGGAGTTTGAAGCCTGTCTGGTGGCCCAATGTGATGCCCTCATCGATGCCCTCAACAGAAGAAAAGCCCAGCTGCTGGCCCGCGTCAACAAGGAGCATGAGCACAAGCTGAAG___GTGGTTCGAGATCAGATCTCTCACTGCACAGTGAAATTGCGCCAGACCACAGGTCTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ninein (GSK3B interacting protein) 1 MPN leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14110 TYW1::ZNF92 ENSG00000198874.14::ENSG00000146757.14 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2481 TRUE 967 TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67067403:+ chr7:66460160-66704501:+ chr7:66532390:+ ZNF92 ENSG00000146757.14 protein_coding + + chr7:65373799-65401136:+ chr7:65387902:+ chr7:64838712-64866049:+ chr7:64852815:+ chr7:67080981,chr7:67080975 chr7:65375718,chr7:65375709 NA NA chr7:66545968,chr7:66545962 chr7:64840631,chr7:64840622 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Flavodoxin(100%),Radical_SAM_superfamily(8%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) Flavodoxin_1(100%),Radical_SAM(0%),SBDS(100%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 2 2 5 114 100 ENST00000361660.8 ENST00000328747.12 downstream upstream mismatches(1) GATGGTGAAAGAAGAGCTATGATAACTCCTGCTCTCCGAGAAGCCCTTACTAAACAAG___TCCATGCTCCGAGGGAGAGGAGGTTGTTACAAACACACATTCTATGGAATTGAGAGCCATCGCTGCATGGAAACCACCCCGAGCTTGGCGTGTGCTAATAAATGTGTCTTCTGTTGGCG|GGACCACTGACATTTAGGGATGTGAAAATAGAATTCTCTCTAGAGGAATGGCAATGCCTGGACACTGCGCAGCGGAATTTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTGG...CCTTG___GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGGCTGGAGCAAGGAAAAGAGCCCTGGAATCTGAAGAGACATGAGATGGTAGACAAAACCCCAG...TGTTCTCATTTTGCCCAAGATGTTTGGCCAGAGCACAGCATAAAAGATTCTTTCCAAAAAGTGATACTGAGAACATATGGAAAATATGGACATGAGAATTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14111 TYW1::ZNF92 ENSG00000198874.14::ENSG00000146757.14 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2481 TRUE 967 TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67067403:+ chr7:66460160-66704501:+ chr7:66532390:+ ZNF92 ENSG00000146757.14 protein_coding + + chr7:65373799-65401136:+ chr7:65398341:+ chr7:64838712-64866049:+ chr7:64863254:+ chr7:67080981,chr7:67080975 chr7:65375718,chr7:65375709 NA NA chr7:66545968,chr7:66545962 chr7:64840631,chr7:64840622 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Flavodoxin(100%),Radical_SAM_superfamily(8%)|Zinc_finger__C2H2_type(100%) Flavodoxin_1(100%),Radical_SAM(0%),SBDS(100%)|zf-C2H2(100%),zf-C2H2_6(100%) 2 1 2 114 177 ENST00000361660.8 ENST00000357512.3 downstream upstream none AGAGAAGTCTGGTTTGTTCAGGAACATGGGGAGGAATGAAGATGGTGAAAGAAGAGCTATGATAACTCCTGCTCTCCGAGAAGCCCTTACTAAACAAG___GTT...CATGCTCCGAGGGAGAGGAGGTTGTTACAAACACACATTCTATGGAATTGAGAGCCATCGCTGCATGGAAACCACCCCGAGCTTGGCGTGTGCTAATAAATGTGTCTTCTGTTGGCG|TTATGTGTTCTCATTTTGCCCAAGATGTTTGGCCAGAGCACAGCATAAAAGATTCTTTCCAAAAAGTGATACTGAGAACATATGGAAAATATGGACATGAGAATTTACAGCTAAGAAAAGACCATAAAAGTGTGGATGCATGTAAGGTGTACAAAGGAGGTTATAATGGACTTAACCAGTGTTTGACAACTACTGACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14112 BCL11B::PRKD1 ENSG00000127152.18::ENSG00000184304.17 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCL11B ENSG00000127152.18 protein_coding - - chr14:99169287-99272197:- chr14:99231345:- chr14:99635624-99738534:- chr14:99697682:- PRKD1 ENSG00000184304.17 protein_coding - + chr14:29576479-30191898:- chr14:29762340:+ chr14:30045685-30661104:- chr14:30231546:+ chr14:99205074,chr14:99205076 chr14:29722856,chr14:29722854 NA NA chr14:99671411,chr14:99671413 chr14:30192062,chr14:30192060 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 2 1 6 18 8 ENST00000357195.8 unknown upstream upstream mismatches(1) GGCGCTCTCCCGCCCTGCCTCCCCCTGCCGTGCTGCAGCGCGCGCCCGGTCTCGGGTGACGGGACTCAGGGTGAGGGTCAGACGGAGGCTCCCTTTGGATGCCAGTGTCAGTTGTCAG|GCACTCCAGCCACCACTCTGCATGAAAGAGTCACCATTCTAGAAGGACCAGCTACTCTTCTAGTCAAATCAGAAGACAGGATGCTTCTTTGAGTGAACCCCCTGGAATTCTCAACTTAGAGGCTCTGCTCTGAAG___GCTCACAACTGGAGAGAAATTTGCCTCAGGGCGAATCATACAATGACTCTCAGCCATATATGATTTCGATATTTG GALPPCLPLPCCSARPVSGDGTQGEGQTEAPFGCQCQLS|gtpattlhervtilegpatllvksedrmll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE B-cell CLL/lymphoma 11B (CTIP2) 1 T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14113 CDKAL1::E2F3 ENSG00000145996.11::ENSG00000112242.16 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2482 TRUE 968 CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20649377:+ chr6:20534688-21232635:+ chr6:20649608:+ E2F3 ENSG00000112242.16 protein_coding + + chr6:20401879-20493714:+ chr6:20479846:+ chr6:20402110-20493945:+ chr6:20480077:+ NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Uncharacterized_protein_family_UPF0004(73%)|E2F/DP_family_winged-helix_DNA-binding_domain(100%),E2F_transcription_factor_CC-MB_domain(100%) UPF0004(52%)|E2F_CC-MB(100%),E2F_TDP(100%) 1 1 7 309 395 ENST00000274695.8 ENST00000535432.2 downstream upstream duplicates(1),mismatches(1) CGTGATCTGAAAGTGGCTAGCCTAATTGAAAG___...CTTTGACTCTGGGATTCAAGGG___AAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAA|GCAAAGCGAAGGCTGGAGCTAGGAGAAAGCGGTCATCAGTACCTCTCAGATGGTTTAAAAACCCCCAAGGGCAAAGGAAGAGCTGCACTACGAAGTCCAGATAGTCCAAAAA___AAAAAACGCGGTATGATACGTCTCTTGGTCTGCTCACCAAGAAGTTCATTCAGC...ATTTGAACAAGGCAGCAGAAGTGCTAAAAGTGCAAAAGAGAAGGATTTATGATATCACCAACGTTCTGGAAGGCATCCACCTCATTAAGAAGAAGTCTAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14114 CDKAL1::E2F3 ENSG00000145996.11::ENSG00000112242.16 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2482 TRUE 968 CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20846178:+ chr6:20534688-21232635:+ chr6:20846409:+ E2F3 ENSG00000112242.16 protein_coding + + chr6:20401879-20493714:+ chr6:20488113:+ chr6:20402110-20493945:+ chr6:20488344:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Radical_SAM_superfamily(22%),Uncharacterized_protein_family_UPF0004(100%)|E2F/DP_family_winged-helix_DNA-binding_domain(4%),E2F_transcription_factor_CC-MB_domain(20%) Radical_SAM(22%),UPF0004(100%)|E2F_CC-MB(1%) 1 0 1 1024 657 ENST00000274695.8 ENST00000346618.8 downstream upstream none CGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGG___GTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAG|AGCCTACAAATACATTTGGCAAGTACCCAA...AACCAAGACCACAATGGGAATATCCCTAAACCCGCTTCCAAAG___ACTTGGCTTCAACCAACTCAGGACATAGCGATTGCTCAGTTTCTATGGGAAACCTTTC KIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQ|eptntfgkyp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14115 PNPLA8::BCAP29 ENSG00000135241.17::ENSG00000075790.12 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PNPLA8 ENSG00000135241.17 protein_coding - - chr7:108470417-108569666:- chr7:108491410:- chr7:108110861-108210110:- chr7:108131854:- BCAP29 ENSG00000075790.12 protein_coding + - chr7:107580246-107629170:+ chr7:107615193:- chr7:107220691-107269615:+ chr7:107255638:- chr7:108490129,chr7:108490129,chr7:108490142 chr7:107628339,chr7:107628336,chr7:107628349 NA NA chr7:108130573,chr7:108130573,chr7:108130586 chr7:107268784,chr7:107268781,chr7:107268794 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Patatin-like_phospholipase(54%)| Patatin(47%),THAP(100%)| 0 2 6 213 10 ENST00000257694.13 unknown upstream downstream none GCTCTCCAGACCCTACGAAAATTAGTTGAACTTACTCAGAAGCCAGTTCATCAGCTCTTTGATTACATTTGTGGTGTAAGCACAG___GGATAGGATGGGATCT...GAAACAGCAAGAAACCCCACATGTCCTAAG|AATTAAGAGAACCAATGGCTGTTACCACAATGGAGACATTCAACAATGGAGACATTCAACAATGGAGACATTCAACAATGGACACTGGCCgTAAGAAACTGAAGGCATACTTCTGGTTTTCCTTTCTCCATTCAAAGAT...AACCCTAATCTCACAAATAGGGGGAAAATGTTGTATTTCTAGGCAAGAGGTCTCTGAAGTGACTTCTTCACTTTCCAAGGTGGACCTTGAAAGATACCACGAATAATTATCATGCC ETARNPTCPK|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14118 CDH12::MYO10 ENSG00000154162.15::ENSG00000145555.15 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDH12 ENSG00000154162.15 protein_coding - - chr5:21750673-22853344:- chr5:21842161:- chr5:21750782-22853453:- chr5:21842270:- MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16818167:- chr5:16662016-16936397:- chr5:16818276:- chr5:21821978 chr5:16822243 NA NA chr5:21822087 chr5:16822352 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cadherin_domain(38%)|FERM_central_domain(100%),IQ_calmodulin-binding_motif(100%),MyTH4_domain(100%),Myosin_X_N-terminal_SH3_domain(34%),Myosin_head_(motor_domain)(100%),PH_domain(100%),Ras_association_(RalGDS/AF-6)_domain(100%),Unconventional_myosin-X_coiled_coil_domain(100%) Cadherin(79%)|FERM_M(100%),IQ(100%),MYO10_CC(100%),MyTH4(100%),Myosin_head(100%),PH(100%),PH_3(100%),PH_8(100%),RA(100%),SH3_19(0%) 3 1 3 401 447 ENST00000382254.6 ENST00000513610.6 upstream downstream duplicates(1) GTGCAGGATATTAATGATAATGAGCCAAAGTTTTTGGATGGACCTTATGTTGCTACTGTTCCAGAAATGTCTCCTGTGG___GTGCATATGTACTCCAGGTCAA...CCAGAGTCGTTTACAGCATTCTTCAGGGACAACCTTATTTCTCTATTGATCCCAAGACAG___GTGTTATTAGAACAGCTTTGCCAAACATGGACAGAGAAGTCAAAGAACAATATCAAGTACTCATCCAAGCCAAGGATATGGGAGGACAGCTTGGAGGATTAGCCGGAACAACAATAGTCAACATCACTCTCACCGATGTCAATGACAATCCACCTCGATTCCCCAAAA|GTATTCACTTACAAGCAGAGCACAATTACCCACCAGAAGGTGACTGCTATGCACCCCACGAACGAGGAGGGCGTGGATGACATGGCGTCCTTGACAGAGCTCCA...CCTCACGTTTGAGTGAATGCTTATTTTTGTTTTCAGAGAGTATTTCTTGCCTTTTGAGAATTCTTGTTAATCTAAGTAAAATTATGTTTTCAAGGGATTTG RVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPK|sihlqaehnyppegdcyapherggrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14126 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2483 TRUE 969 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:126851158:- chr8:127568568-128431295:+ chr8:127863403:- chr8:127820517,chr8:127820523 chr8:127346608,chr8:127346602 NA NA chr8:128832763,chr8:128832769 chr8:128358854,chr8:128358848 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none none 7 4 19 8287 24 ENST00000651587.1 unknown downstream downstream duplicates(2) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTCTCAGTCACCAAATACTGGAACAGAAATTTTGCTTCCCATTTTGCAGATAAGAAGAAAAGCCAAATTGGAGAAAAATAAAATTGAGGGTGTATCCATGCCAATATACCAACACTGCAG___AAGCTTGACTGACTGCAGGAAGTATCCATTGCGATCTGCTTTCCACCGGGTAACAAGAGCTTCTTCCTTTCCAGGAAGCTTCAGCTGTCCCACTCTGCCAGAGGCTGGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14127 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2483 TRUE 969 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126877672:+ chr8:127568568-128431295:+ chr8:127889917:+ chr8:127798720,chr8:127808315,chr8:127808317,chr8:127808319,chr8:127808325,chr8:127808326,chr8:127808328 chr8:126843039,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154 NA NA chr8:128810966,chr8:128820561,chr8:128820563,chr8:128820565,chr8:128820571,chr8:128820572,chr8:128820574 chr8:127855284,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 2 0 5 8287 145 ENST00000651587.1 ENST00000645463.1 downstream upstream duplicates(1),mismappers(1) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AAGAGGCAGAGGATGTTGACACAAACTTACAGACTGGGACTCCAAGGATCAGCCAGATGAAATGCTATGTGCAGAGTCTTCATTTCCCAGCTCAGTGGTGGACAGCAGAGGACTCTAAG___ATCCAGCCACCTCTTGGGATGCACACGTTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14128 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2483 TRUE 969 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126634545:+ chr8:127568568-128431295:+ chr8:127646790:+ chr8:127808315,chr8:127808317,chr8:127808319,chr8:127808325,chr8:127808326,chr8:127808328 chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154 NA NA chr8:128820561,chr8:128820563,chr8:128820565,chr8:128820571,chr8:128820572,chr8:128820574 chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 6 8287 0 ENST00000651587.1 ENST00000517915.2 downstream upstream duplicates(2) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GATGATCTGCAAGTATCCTGCAAATATCTCACCCAGTTATTGCTGGGATTCCCCAGGAACATTACATGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14129 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2483 TRUE 969 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126666545:+ chr8:127568568-128431295:+ chr8:127678790:+ chr8:127808315,chr8:127808317,chr8:127808319,chr8:127808325,chr8:127808326,chr8:127808328 chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154,chr8:126577154 NA NA chr8:128820561,chr8:128820563,chr8:128820565,chr8:128820571,chr8:128820572,chr8:128820574 chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399,chr8:127589399 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 5 8287 4 ENST00000651587.1 ENST00000520512.1 downstream upstream duplicates(2) GCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGTATACAGGAAGCATGGTGCCAGCATGTGCCACTGaTGAGGGCCTCAGGAAACTTACAATCATGGTGGAAGGTGAAGGGGAAGCAGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14132 CASC8::PCAT1 ENSG00000246228.7::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127479717:- chr8:128302053-128494384:- chr8:128491962:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:126563269:- chr8:127568568-128431295:+ chr8:127575514:- chr8:127361578,chr8:127361578,chr8:127361578,chr8:127361578,chr8:127363054,chr8:127363221,chr8:127363509,chr8:127405630,chr8:127405663,chr8:127405734,chr8:127405791,chr8:127405868,chr8:127406613,chr8:127406677,chr8:127295098,chr8:127295098,chr8:127295101,chr8:127405878,chr8:127301509,chr8:127302830,chr8:127301711,chr8:127301641,chr8:127302965,chr8:127363342,chr8:127363307,chr8:127375754,chr8:127363223,chr8:127303684 chr8:127238970,chr8:127238999,chr8:127239013,chr8:127239022,chr8:127363314,chr8:127406648,chr8:127363511,chr8:127104006,chr8:127104006,chr8:127104008,chr8:127104004,chr8:127104005,chr8:127104008,chr8:127104004,chr8:126993318,chr8:126993316,chr8:126993324,chr8:127036608,chr8:127301908,chr8:127303221,chr8:127301752,chr8:127302029,chr8:127303158,chr8:127363536,chr8:127363306,chr8:127375743,chr8:127406647,chr8:126789832 NA NA chr8:128373824,chr8:128373824,chr8:128373824,chr8:128373824,chr8:128375300,chr8:128375467,chr8:128375755,chr8:128417875,chr8:128417908,chr8:128417979,chr8:128418036,chr8:128418113,chr8:128418858,chr8:128418922,chr8:128307343,chr8:128307343,chr8:128307346,chr8:128418123,chr8:128313754,chr8:128315075,chr8:128313956,chr8:128313886,chr8:128315210,chr8:128375588,chr8:128375553,chr8:128388000,chr8:128375469,chr8:128315929 chr8:128251215,chr8:128251244,chr8:128251258,chr8:128251267,chr8:128375560,chr8:128418893,chr8:128375757,chr8:128116251,chr8:128116251,chr8:128116253,chr8:128116249,chr8:128116250,chr8:128116253,chr8:128116249,chr8:128005563,chr8:128005561,chr8:128005569,chr8:128048853,chr8:128314153,chr8:128315466,chr8:128313997,chr8:128314274,chr8:128315403,chr8:128375782,chr8:128375552,chr8:128387989,chr8:128418892,chr8:127802077 NA NA sense antisense unknown exon intron deletion/5'-5' medium none none none 3 8 7 19 12 ENST00000502082.5 unknown upstream downstream none CTGG___...GAGAGTTATGAAATTCAAAAGGTCATGGTAGAAAGTGTCTTGGAGACATCTCTTCCGAGCTTCTGTTTTG...___TATACACCAGAATGCCCCGCATcCAGCGAATGCTCAAAAAGTGTTGGTGGAAGTGACAGAATTCCATCACCATTAAACACAACCAGTGaT|TTCACAAGTGAGGCAAACAGTATCATCAGCCTCCCTTTAGAGTTTGGAAAAAGAAGCCCGGAGTGGAGAAGAGACATCTCGGAGATGATGCAGTTGGCAAATAGGATTAGCCCAGGTCATCTGGCTCCATTTGCTATTGCTTACCTCCAAAAGTCACAACAAAACCCCAGCAGTGAATAAGAGGTGCAG___GATGACGCACTCTTCGAGCTGTCCTGGTGAAGAATCCTTTCTTGTGACCTTTAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14144 NFIB::PCAT1 ENSG00000147862.18::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NFIB ENSG00000147862.18 protein_coding - - chr9:14081843-14398983:- chr9:14306989:- chr9:14081842-14398982:- chr9:14306988:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126877672:+ chr8:127568568-128431295:+ chr8:127889917:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none MH1_domain(100%),Nuclear_factor_I_protein_pre-N-terminus(100%)| MH1(100%),NfI_DNAbd_pre-N(100%)| 3 2 2 3147 145 ENST00000380934.8 ENST00000645463.1 upstream upstream mismappers(1) CTATACTTGGTTCAACCTGCAGGCTCGAAAACGCAAGTACTTTAAAAAGCATGAGAAGCGAATGTCAAAGGATGAAGAAAGAGCAGTCAAAGATGAGCTTCTCAGT...CCAGGAGTATCGAGAGGACTTTGTGCTCACCGTGACTGGCAAGAAGCACCCGTGCTGTGTCTTATCCAATCCCGACCAGAAGGGTAAGATTAGGAGAATCGACTGCCTGCGACAGGCAGACAAAGTCTGGCGTCTGGATCTAGTCATGGTGATCCTGTTCAAAGGCATCCCCTTGGAAAGTACCGATGGAGAGCGGCTCATGAAATCCCCACATTGCACAAACCCAGCACTTTGTGTCCAGCCACATCATATCACAGTATCAGTTAAGGAGCTTGATTTGTTTTTGGCATACTACGTGCAGGAGCAAG|AAGAGGCAGAGGATGTTGACACAAACTTACAGACTGGGACTCCAAGGATCAGCCAGATGAAATGCTATGTGCAGAGTCTTCATTTCCCAGCTCAGTGGTGGACAGCAGAGGACTCTAAG___ATCCAGCCACCTCTTGGGATGCACACGTTTCTCTTCAACTGCGTGATGTGAACTGCGTCACATG QEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQ|eeaedvdtnlqtgtprisqmkcyvqslhfpaqwwtaedskiqpplgmhtflfncvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear factor I/B 1 adenoid cystic carcinoma, lipoma epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14156 CACNA1C::ADIPOR2 ENSG00000151067.23::ENSG00000006831.10 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2053611:+ chr12:2079938-2807116:+ chr12:2162777:+ ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1754258:+ chr12:1797740-1897840:+ chr12:1863424:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none |Haemolysin-III_related(100%) DCP1(100%)|HlyIII(100%) 1 1 1 98 585 ENST00000327702.12 ENST00000357103.5 downstream upstream duplicates(1) GAAGAAACGCTGCAGACCACGGCTTCCTCGAATCTTGCGCGAAAGCCGCCGGCCTCGGAGGAGGGATTAATCCAGACCCGCCGGGGGGTGTTTTCACATTTCTTCCTCTTCGTGGCTGCTCCTCCTATTAAAACCATTTTTGGTCCATGGTCAATGAGAATACGAGGATGTACATTCCAGAGGAAAACCACCAAG|GATCAACTCACTATCCTGAAGGTCCATTCTCCCAAGAAGAGGGGACAGAAAGACAGATCTATTTGTAAGAAAGGCTTGGGTATCCCATGAACG...ACTACCAGACTGGCTCAAGGATAATGACTTCCTCTTGCATGGACACCGGCCTCCTATGCCTTCTTTCCGGGCCTGTTTTAAGAGCATTTTCAGAATACAC MVNENTRMYIPEENHQ|gsthypegpfsqeegterqiyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14222 ROBO2::ROBO1 ENSG00000185008.19::ENSG00000169855.21 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ROBO2 ENSG00000185008.19 protein_coding + + chr3:75906695-77649964:+ chr3:77098340:+ chr3:75955846-77699115:+ chr3:77147491:+ ROBO1 ENSG00000169855.21 protein_coding - - chr3:78597239-79767998:- chr3:78607041:- chr3:78646389-79817148:- chr3:78656191:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Immunoglobulin_domain(100%)| I-set(0%),Ig_2(0%),Ig_3(0%),ig(0%)| 2 0 0 677 3918 ENST00000487694.7 ENST00000464233.6 downstream downstream duplicates(2) TGATCTTGCGATTTGCTCTTCTTGACTTTAATTAGTATCTAGGAAAGTCTAAACTTTGGACCTACCTCTTTTTTTGATACTCATTTTTGTACTTTTGCTCT...CGCAGGAGTAAACCTGATGAAGGAAGCTACGTTTGTGTTGCGAGGAACTATCTTGGTGAAGCAGTGAGTCGAAATGCGTCTCTGGAAGTGGCAT|ATCTTCCACCACCTCCTGTGCCGCCACCTGCTATAAAGTCACCTACTGCCCAAT RRSKPDEGSYVCVARNYLGEAVSRNASLEVA|yLPPPPVPPPAIKSPTAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE roundabout guidance receptor 2 2 colorectal adenocarcinoma, melanoma epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 14258 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73207866:+ chr10:74927877-75004262:+ chr10:74967624:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Vacuolar_protein_sorting-associated_protein_26_(15%)| Vps26(0%)| 7 15 30 726 44 ENST00000263559.11 ENST00000242505.11 downstream upstream duplicates(5),mismatches(3) AGCCGGGGCTGGGAGTTCTCCTGAGGGAAGAGGAGTGGAGTAGGGGGGACGCGGCGGCGGCGTTGACAATG___AGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCCGTTTCAGGAAAG|GCTCATAGCTGGAAGGGATGTGCCTTGTCTCAGAGGAGACGTGGGACTTTGGACTTTTGAATTAACACTGGAATGAGTCAAGACTTTTGAGACTTTTTGGAAACCATAATTGTATTTTGCAATGTGAGAAGGATATGAGATTTGGGAGGAGCCAAGGGCAGGATGCCCAA...TTGGTATAAGGGGAAAGAAGTTACATTTTTCATCTTCTTATGCTCATAAAGCATCTTCCATTGCCAAATCCTCCAGCTTTTGTTCTATGGAAAGAGATGAGGAAGACTCTATAATCGTCTCAGAAGGAATAATTGAGGAATACCTAGCATTCGATCACATAGATAT___AGAAGAGGGATTTCATGGGAAGAAATCAGAAGCAGCTACAGAGAAA MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGK|ahswkgcalsqrrrgtldf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14259 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1393 TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73208619:+ chr10:74927877-75004262:+ chr10:74968377:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Vacuolar_protein_sorting-associated_protein_26_(15%)| Vps26(0%)| 1 15 22 726 135 ENST00000263559.11 ENST00000242505.11 downstream upstream duplicates(2) CCGGAGCGGAGGGAGCCGGGGCTGGGAGTTCTCCTGAGGGAAGAGGAGTGGAGTAGGGGGGACGCGGCGGCGGCGTTGACAATG___AGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCCGTTTCAGGAAAG|ATTTGGTATAAGGGGAAAGAAGTTACATTTTTCATCTTCTTATGCTCATAAAGCATCTTCCATTGCCAAATCCTCCAGCTTTTGTTCTATGGAAAGAGATGAGGAAGACTCTATAATCGTCTCAGAAGGAATAATTGAGGAATACCTAGCATTCGATCACATAGATAT___AGAAGAGGGATTTCATGGGAAGAAATCAGAAGCAG MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGK|iwykgkevtffiflcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14260 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73228060:+ chr10:74927877-75004262:+ chr10:74987818:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Vacuolar_protein_sorting-associated_protein_26_(15%)| Vps26(0%)| 2 0 2 726 210 ENST00000263559.11 ENST00000372955.7 downstream upstream none AGGGAGCCGGGGCTGGGAGTTCTCCTGAGGGAAGAGGAGTGGAGTAGGGGGGACGCGGCGGCGGCGTTGACAATG___AGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCCGTTTCAGGAAAG|ATGATGAGAGTAATGTTGCAGTTACCAGACCCGA...AAGTTCCTGTGTGCTGAGTGAACTACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAG___ATGAGTCTCTGTCAAGCAAGCAGACATCAGCCAAATGTGA MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGK|mmrvmlqlpdp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14261 MB21D2::RERG ENSG00000180611.7::ENSG00000134533.6 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- RERG ENSG00000134533.6 protein_coding - + chr12:15107783-15348675:- chr12:15132123:+ chr12:15260717-15501609:- chr12:15285057:+ chr3:192890436,chr3:192890440 chr12:15107719,chr12:15107715 NA NA chr3:192608225,chr3:192608229 chr12:15260653,chr12:15260649 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 15 13 13 164 49 ENST00000392452.3 unknown upstream upstream duplicates(4),mismatches(1) GCGCGTTTTGCATGAAGATGGCGGCTCCCACCGCCAACAAGGCAGCCTCCCTGGGCTGTAACAACAAGCCTGCGTTCCCGGAGCTGGATTTCAGGTCGGGAGCTCGGGTGGAGGAATTGAACAAACTCATCCAAGAATTTACGAAGCACGACCAGCGGGAATACGACGACCAGAGAGCGCTGGAGATTCACACAGCCAAGGATTTCATCTTTTCCATGCTGG|GTCACTGCTGTTTCATTGCCAAGATGAACTAGGAGGATGAAG___GTCAGTCTTTTCCTCCTGATGAAGGAATTCATGAACTGCATGCTACCCTTACTGTTATGACTTCTAAAACTGC MKMAAPTANKAASLGCNNKPAFPELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSML|ghccfiakmn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 14263 RERG::CBFB ENSG00000134533.6::ENSG00000067955.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1395 TRUE 2508 TRUE 971 RERG ENSG00000134533.6 protein_coding - - chr12:15107783-15348675:- chr12:15217429:- chr12:15260717-15501609:- chr12:15370363:- CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67066682:+ chr16:67062887-67134961:+ chr16:67100585:+ chr12:15152220 chr16:67061673 NA NA chr12:15305154 chr16:67095576 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ras_family(8%)|Core_binding_factor_beta_subunit(44%) Arf(0%),MMR_HSR1(0%),Ras(0%),Roc(0%)|CBF_beta(46%) 7 16 16 295 267 ENST00000256953.6 ENST00000290858.11 upstream upstream duplicates(4),mismatches(1) TCCCTCCGCCGCTAGTCGGAGCGAGCGCGAGTGAGGAGACCCCCGCCGGGCCACTGGCACTTGCTTCTGCGGCGAGTCCCACCCACGACCGCAGCCCAGCAACTCGCAAACGCAACCTGAAGCCTGGGCTGCGCAGTGTGGGAGGGCTTCGCGATCTTGGGGGACCCATTCCGAACTTGCAGAGGACCGTAGCTCTCCTGGCCTGGAGAGTGTGAACAG___GATTGTGGACTCTTCCAAGATTCACAATGATATGGTGAATCCAAAGACTGGAACCAAAAAGATTTACTCAGTGCTTTAGTTTTAACAACAGTAAATTGTCTACCAACACCCATCATGGCTAAAAGTGCGGAGGTCAAACTGGCAATATTTGGGAGAGCAGGCGTGGGCAAGTCAG|GTATATTTGAAGGCTCCCATGATTCTGAATGGAGTCTGTGTTATCTGGAAAGGCTGGATTGATCTCCAAAGACTGGATGGTATGGGCTGTCTGGAGTTTGATGAGGAGCGAGCCCAG___CAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCTCGGAGAAGGACACGCGAATTTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGG MAKSAEVKLAIFGRAGVGKS|gifegshdsewslcylerld* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 14264 RERG::CBFB ENSG00000134533.6::ENSG00000067955.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2508 TRUE 971 RERG ENSG00000134533.6 protein_coding - - chr12:15107783-15348675:- chr12:15337377:- chr12:15260717-15501609:- chr12:15490311:- CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67066682:+ chr16:67062887-67134961:+ chr16:67100585:+ chr12:15152220 chr16:67061673 NA NA chr12:15305154 chr16:67095576 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Core_binding_factor_beta_subunit(44%) |CBF_beta(46%) 1 2 1 74 267 ENST00000393736.3 ENST00000290858.11 upstream upstream duplicates(1) GGACTGTTCCCAGATTCTAGAGACTGCCTGCATACCTTGGCTTATCACCTTCCACTGCCTGCATACCTTGGCTTATGCCCTTTCTCCTGCATCTTCCAAGC...TTCTGTCCTGGCATAAGGATCCCTTCACTCTCGGAAGTGTTCCG|GTATATTTGAAGGCTCCCATGATTCTGAATGGAGTCTGTGTTATCTGGAAAGGCTGGATTGATCTCCAAAGACTGGATGGTATGGGCTGTCTGGAGTTTGATGAGGAGCGAGCCCAG___CAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCTCGGAGAAGGACACGCGAATTTGAAGATAGAGACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 14266 KIAA0232::LINC01511 ENSG00000170871.12::ENSG00000250584.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1397 TRUE 2509 TRUE 972 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6782841:+ chr4:6783102-6885897:+ chr4:6784568:+ LINC01511 ENSG00000250584.4 lncRNA - - chr5:1353896-1380107:- chr5:1364691:- chr5:1354011-1380222:- chr5:1364806:- chr4:6812531 chr5:1375751 NA NA chr4:6814258 chr5:1375866 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 2 23 0 58 48 ENST00000425103.5 ENST00000667031.2 downstream downstream duplicates(1),mismatches(5) CCCGCAGCCCCTCGGAGCCAGAGGAGAGGCGCCCCCGCCGGCCGCCGCGCCGCCCGGCAGCCTCGGCAG|ACTTTATCTTCTATTCCGTTGGTCTGCCTATCTAGAAAGCAAAATTTCAAATACTGAGACCGATAGATGAAGATGCTTTCGCTTCTTCCCTGTTTCATCCAGTTGGGGACTAAGTGTCCTTCGGTTTGGACTGTGCAGCTCGGGTCACCTTCTCTGTGGAACAGCAAGTGAAGAAAGAGGCGCAGAGCCCTGTGTTCCAAACCCTGGAGACAATTGAGAAAGTGGGAACCCATTATTCCCCAAGCCCAGCCAGCAAACCTCACCGATGAAACAGATAAGCACTTCCTGCAGGTGGGGCCGACACTGGCCAGGACACAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14267 KIAA0232::LINC01511 ENSG00000170871.12::ENSG00000250584.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1398 TRUE 2509 TRUE 972 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6804606:+ chr4:6783102-6885897:+ chr4:6806333:+ LINC01511 ENSG00000250584.4 lncRNA - - chr5:1353896-1380107:- chr5:1364691:- chr5:1354011-1380222:- chr5:1364806:- chr4:6812531 chr5:1375751 NA NA chr4:6814258 chr5:1375866 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 2 7 5 48 ENST00000307659.6 ENST00000667031.2 downstream downstream duplicates(1),mismatches(1),multimappers(1) CCGGCGCTCGGCAGCCGCCCGCAGCCCCTCGGAGCCAGAGGAGAGGCGCCCCCGCCGGCCGCCGCGCCGCCCGGCAGCCTCGGCAG___GTAGTGTACACTGATAAAGGTAGGGCGCGGTGGACTCTGCCCCTGTAACCGTTCCGGAGAATGCGTTGAGAATGAAGACAACCA|ACTTTATCTTCTATTCCGTTGGTCTGCCTATCTAGAAAGCAAAATTTCAAATACTGAGACCGATAGATGAAGATGCTTTCGCTTCTTCCCTGTTTCATCCAGTTGGGGACTAAGTGTCCTTCGGTTTGGACTGTGCAGCTCGGGTCACCTTCTCTGTGGAACAGCAAGTGAAGAAAGAGGCGCAGAGCCCTGTGTTCCAAACCCTGGAGACAATTGAGAAAGTGGGAACCCATTATTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14268 KIAA0232::LINC01511 ENSG00000170871.12::ENSG00000250584.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2509 TRUE 972 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6782841:+ chr4:6783102-6885897:+ chr4:6784568:+ LINC01511 ENSG00000250584.4 lncRNA - - chr5:1353896-1380107:- chr5:1355535:- chr5:1354011-1380222:- chr5:1355650:- chr4:6812531 chr5:1375751 NA NA chr4:6814258 chr5:1375866 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 7 0 58 20 ENST00000425103.5 ENST00000653645.1 downstream downstream mismatches(1) CGGCGCTCGGCAGCCGCCCGCAGCCCCTCGGAGCCAGAGGAGAGGCGCCCCCGCCGGCCGCCGCGCCGCCCGGCAGCCTCGGCAG|GTTGGCAAAACTCCACAAGGTCACCAGCACACCTTGATGGGGAGGCTGCAGGGAAACACACAACCTCATGCTTTGCTGCTGGGATGCAAACAGCACAGCCCCTGCGGGAAGAAGCTCAGAGATGCCCGGAAAGACCTGTGTGCATTCACAACTGCATCCTTCAATTCCACTTCTAAGCAGCTACCTTAAAGTCACAAAATATCAGAAAATGGATGTTCAAGGTCATTCAACGTAACCCTGCTTTTAATACCTACAGACTTTTTTTTTAACCAAAGGATATATCCTGG...AATGGAACCTCTGAGATGAAAAATACCTTTGAAATGAAAAATTCATAATATGAGCTTAGCAGCAGTTTGAAAACTGCAGAAAAATACCAGTGAACTTGAAT...ATTAGAAAGTATTCAAACCTAAGCACGGAGACGGGAGAAAAGTTTCAACATAAACAGAACCTCACTGACATTGAAACAGCATCAAGCAGCTCATATACATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14269 VPS26A::DNAJC9 ENSG00000122958.15::ENSG00000213551.7 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ DNAJC9 ENSG00000213551.7 protein_coding - + chr10:73183362-73247255:- chr10:73207866:+ chr10:74943120-75007013:- chr10:74967624:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Vacuolar_protein_sorting-associated_protein_26_(15%)| Vps26(0%)| 7 7 8 726 44 ENST00000263559.11 unknown downstream upstream duplicates(3),mismatches(3) GAAGAGGAGTGGAGTAGGGGGGACGCGGCGGCGGCGTTGACAATG___AGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAATGATGGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGACGGAGAATCCGTTTCAGGAAAG|GCTCATAGCTGGAAGGGATGTGCCTTGTCTCAGAGGAGACGTGGGACTTTGGACTTTTGAATTAACACTGGAATGAGTCAAGACTTTTGAGACTTTTTGGAAACCATAATTGTATTTTGCAATGTGAGAAGGATATGAGATTTGGGAGGAGCCAAGGGCAGGATGCC MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGK|ahswkgcalsqrrrgtldf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14270 ENSG00000198491::DNAJC9 ENSG00000198491.3::ENSG00000213551.7 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE TRUE 1399 FALSE NA FALSE NA ENSG00000198491 ENSG00000198491.3 lncRNA - - chr3:187197090-187207629:- chr3:187197765:- chr3:186914878-186925417:- chr3:186915553:- DNAJC9 ENSG00000213551.7 protein_coding - - chr10:73183362-73247255:- chr10:73243929:- chr10:74943120-75007013:- chr10:75003687:- NA NA NA NA NA NA NA NA sense sense unknown exon CDS/splice-site translocation high none none |DUF3719(100%) 5 10 3 18 839 ENST00000356133.3 ENST00000372950.6 upstream downstream duplicates(4),mismatches(2) CTCAGCCTCCCCATCTTATGTCTCAAAG___ACGGAAAAATTGTGACTCAGAGAGGAAGAGTAACACAGGTGATCAGTAGAAGAGCTGAAATCCAACTCAAGTGTCGTAGTTCCCAGTTAGGGACTCTTTCTCTGACTTCCAGTCTACGCCAGCCTAATAGTGAGATTGAAGCTAAACACTTGGGTTCTACGTAATCTTCCTCTCCTTGGAAGGTGCCCCAGAGCTAGGGACCTAGAGGCGGCCTGCAGGGATCCACCTTCCTGGGCTACTCACCTGCCTGAAGCATGCAATTCCAG|GCTCAGGAAGAGGCCAAAGAAGCAGAAATGAGCAGAAAGGAGTTGGGGCTTGATGAAGGCGTGGATAGCCTGAAGGCAGCCATTCAG___AGCAGACAAAAGGATCGGCAAAAGGAAATGGACAATTTTCTGGCTCAGATGGAAGCAAAGTACTGCAAATCTTCCAAAGGAGGAGGGAAAAAATCTGCTCTCAAGAAAGAAA...GAATTTTTCTCTTCAAAGGTCCTTAGGTGTAAATTGATGCCATCGTAGGCAAGGTGCAGGCAGGATTTGAAGGCAAAAGTCAATTCAGCTCTTGAGAAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14271 CNNM2::ENSG00000198491 ENSG00000148842.18::ENSG00000198491.3 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNNM2 ENSG00000148842.18 protein_coding + + chr10:102918294-103090222:+ chr10:102920101:+ chr10:104678051-104849979:+ chr10:104679858:+ ENSG00000198491 ENSG00000198491.3 lncRNA - - chr3:187197090-187207629:- chr3:187198702:- chr3:186914878-186925417:- chr3:186916490:- chr10:102942648,chr10:102942649 chr3:187203644,chr3:187203643 NA NA chr10:104702405,chr10:104702406 chr3:186921432,chr3:186921431 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none CBS_domain(39%),Cyclin_M_transmembrane_N-terminal_domain(100%)| CBS(0%),DUF21(100%)| 6 0 3 96 30 ENST00000369878.9 ENST00000356133.3 downstream downstream mismatches(2) GTTAAGGAGGAGCTGAACATCATCCAAGGGGCGCTGGAGCTCCGCACCAAGACGGTGGAGGACGTGATGACCCCACTCCGGGACTGCTTCATGATCACCGGCGAAGCCATCCTGGACTTCAACACCATGTCTGAGATCATGGAGAGCGGCTACACCCGCATTCCAGTGTTTGAAGGGGAGCGCTCCAATATCGTGGACCTGCTGTTTGTCAAAGACTTGGCCTTCGTGGATCCCGATGACTGTACCCCCCTGAAAACCATCACCAAATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCTGGAAGAATTTAAGAAAG|AGTGAGAGAGGCATCCATGTACACACAGCTAGAGGCAGAACCGGCGCCCAGCACGTAACAGGTGCCCAGTAATGTTTCCTGAATTGAAGTGAATTGGCTGAACCAGGGCAAGCAGGAAGGCCTTGCTTCTGACTTCCA VKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14272 FAM149B1::CFAP70 ENSG00000138286.15::ENSG00000156042.19 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2510 FALSE NA FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73177973:+ chr10:74927877-75004262:+ chr10:74937731:+ CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73278337:- chr10:75013520-75118622:- chr10:75038095:- chr10:73187034,chr10:73187104,chr10:73187032 chr10:73280436,chr10:73280437,chr10:73280436 NA NA chr10:74946792,chr10:74946862,chr10:74946790 chr10:75040194,chr10:75040195,chr10:75040194 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Tetratricopeptide_repeat(100%) |Sel1(52%),TPR_16(100%),TPR_6(100%),TPR_8(100%) 1 2 4 105 25 ENST00000242505.11 ENST00000355577.9 downstream downstream duplicates(1) GCTTGGAGCT___GAAAGGAATAACAAAACATGCTCTTAACCATCATCCCCCTCCAGAGAAGCTGGAGGAAATTTCCCCCACCAGTGACAGTCATGAGAAAGACACAAGTTCCCAAAG___CAAGTCTGACATCACAAGAGAATCATCTTTTACATCAGCCGACACTGGGAATTCACTGTCTGCTTTTCCAAGTTATACAGGCGCAGGGATATCTACTGAAGGAAGCTCGGACTTCTCCTGGGGATATG|GACCAGGAGCTGCATTATCTATTCTAGACAAATTTCTTGAAGAATCCTCCAAACTGCAGTCTGATTCACAAGAACCCATTTTGACTACACAAACTTGGGATCCAAGTATAAGCCAAAAACCATCTAACACATTTATCAAGGAGATACCAACAAAGAAAG___AAGCATCAAAATGTCAAGATTCATCAGCTCTTCT LELKGITKHALNHHPPPEKLEEISPTSDSHEKDTSSQSKSDITRESSFTSADTGNSLSAFPSYTGAGISTEGSSDFSWGY|gPGAALSILDKFLEESSKLQSDSQEPILTTQTWDPSISQKPSNTFIKEIPTKKEASKCQDSSAL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14274 CCNY-AS1::CACNB2 ENSG00000271335.6::ENSG00000165995.24 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCNY-AS1 ENSG00000271335.6 lncRNA - - chr10:35314552-35336401:- chr10:35336220:- chr10:35603480-35625329:- chr10:35625148:- CACNB2 ENSG00000165995.24 protein_coding + - chr10:18140424-18543557:+ chr10:18303175:- chr10:18429353-18832486:+ chr10:18592104:- chr10:35335171,chr10:35335178 chr10:18307709,chr10:18307708 NA NA chr10:35624099,chr10:35624106 chr10:18596638,chr10:18596637 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 1 4 20 10 ENST00000605499.1 unknown upstream downstream duplicates(1),mismatches(1) GGGGAGGTTCGGGGCGGCGCAGCCCCGCGCGGTTGTGGGATCGCTCCCGGGGGCCGCTCCTCTCTCGGGCACTGGGGTCGCGGGAGACGTCGTCGGGAGCTCGGTTTCTGGAGGCCCTTCCCCACCCGGCCTCTGCCTCCTCCACTCCCCCGGGCTGGACGGAACGGGGCCCAGCGCGGGATGCGAG|CACTCCCGCACAGCCATGAGAGAAAAGCAAAAACAAGAATAAACTGTCTATTCCTTCAACTCCAAAGGTGACACCAGTAGCCAACAAGGACATCCTCCACTGTGAGTGCCACCATGAGACTAACGAGTCTAAGGAGACCCCCGTGAAGCTTCAGAGTTTAAAGGACAGCTGATTACAG___AATGTAAGCTCTATGATGTT...CGGTACCTAGAGGATCATAGAAGAGGCACTCTGgGAACATTTGTTGAATGAATGTCGAACCCTTGTACCAGGATGATCTGATAAGCCTCAGCACATCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14277 MECOM::CFAP70 ENSG00000085276.19::ENSG00000156042.19 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2511 TRUE 973 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169143698:- chr3:168801287-169381563:- chr3:168861486:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73275598:- chr10:75013520-75118622:- chr10:75035356:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Tetratricopeptide_repeat(100%) |Sel1(52%),TPR_16(100%),TPR_6(100%),TPR_8(100%) 1 1 3 30 11 ENST00000651503.2 ENST00000355577.9 upstream downstream none CAAACCTGAAAGACCCCAGTTATGGATGGGAG___ATCTTAGACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTCAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAGATAAATGATCAG|TATGTGCACAGAGTGCTTGCACATGAGCTGTTATGCCCTCAAGGAGGCCCCAGCTGTGAATATTACTTGGTGCTGGCCCAAACACACATTCTTAAGAAGAACTTTGCCAAGGCAGAGGAATACCTTCAACAAGCAGCCCAGATGGACTACCTG___GTTGGACGGCAATTAGAAGCTGAGCAGGCCTACAAGTACATGATCAAG___CTGAAATTGAA NLKDPSYGWEILDEFYNVKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQ|YVHRVLAHELLCPQGGPSCEYYLVLAQTHILKKNFAKAEEYLQQAAQMDYLVGRQLEAEQAYKYMIKLKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14278 MECOM::CFAP70 ENSG00000085276.19::ENSG00000156042.19 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2511 TRUE 973 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169143698:- chr3:168801287-169381563:- chr3:168861486:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73256416:- chr10:75013520-75118622:- chr10:75016174:- chr3:169135001,chr3:169135004 chr10:73275648,chr10:73275648 NA NA chr3:168852789,chr3:168852792 chr10:75035406,chr10:75035406 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 2 1 0 30 9 ENST00000651503.2 ENST00000355577.9 upstream downstream low_entropy(1) GGAAGAGAGAGAGAAACAGGAGAGAAACAGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG...GAGGGAGCGAGAGGGAGAGCAAAAGAAGGAAAGGATCCAAGAAAAAAAAGCCCCAACCACACACCAGCGGCTGCAGGACTGGGCACAGCATGAGATCCAAA...GACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTCAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAGATAAATGATCAG|GTTGGACGGCAATTAGAAGCTGAGCAGGCCTACAAGTACATGATCAAG___CTG...TTCCTTTCCTTCCCAGAGAGTTTTACCGTATGAAGCCTGGAGCTGGAGAACGAAAGAATCTTCACTATAAACAGAGACCCATTCATTTATTTCCATTGGC DEFYNVKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQ|VGRQLEAEQAYKYMIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14279 MECOM::CFAP70 ENSG00000085276.19::ENSG00000156042.19 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2511 TRUE 973 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169143698:- chr3:168801287-169381563:- chr3:168861486:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73269715:- chr10:75013520-75118622:- chr10:75029473:- chr3:169135001,chr3:169135004 chr10:73275648,chr10:73275648 NA NA chr3:168852789,chr3:168852792 chr10:75035406,chr10:75035406 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none |TPR_16(0%) 1 0 0 30 8 ENST00000651503.2 ENST00000355577.9 upstream downstream duplicates(1) TGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTCAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAGATAAATGATCAG|CTGGAGGAGCTCACAGAGGCTG VKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQ|LEELTEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14297 NUTM2B-AS1::ENSG00000244733 ENSG00000225484.7::ENSG00000244733.5 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUTM2B-AS1 ENSG00000225484.7 lncRNA - - chr10:79661394-79826594:- chr10:79826198:- chr10:81421150-81586350:- chr10:81585954:- ENSG00000244733 ENSG00000244733.5 lncRNA + + chr10:79660891-79677996:+ chr10:79669488:+ chr10:81420647-81437752:+ chr10:81429244:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 5 15 0 101 86 ENST00000601369.6 ENST00000482985.4 upstream upstream duplicates(2) GTCCGGCCCGCCCGCAGGCCAGCTTCTCTCGGGAGCCCCCACCCAGGCGCATGGCTCCATGAAGCAAGAGGAGGAGGCAGAGCGCGAGAGGTCCCGTCCGCCCCAGCCGCGTCTGGGCCAGGATAAAAG|CAAACATCTTTCCTGTGAAAAATTCCCTCTCCTAGTACTTTAGTTCTGTGGATCCAAAATTTATAGCATTCTTCTACCACCACAGGG___GCTCATATGACATTAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14299 MECOM::DNAJC9-AS1 ENSG00000085276.19::ENSG00000236756.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169143764:- chr3:168801287-169381563:- chr3:168861552:- DNAJC9-AS1 ENSG00000236756.4 lncRNA + - chr10:73247360-73276984:+ chr10:73275600:- chr10:75007118-75036742:+ chr10:75035358:- NA NA NA NA NA NA NA NA sense antisense unknown CDS exon translocation/5'-5' low none none none 0 0 4 40 11 ENST00000651503.2 unknown upstream downstream none TTGGGCCTTATGTGGGAGAGCAGAGGgCAAACCTGAAAGACCCCAGTTATGGATGGGAG___ATCTTAGACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTC...|...AGTATGTGCACAGAGTGCTTGCACATGAGCTGTTATGCCCTCAAGGAGGCCCCAGCTGTGAATATTACTTGGTGCTGGCCCAAACACACATTCTTAAGAAGAACTTTGCCAAGGCAGAGGAATACCTTCAACAAGCAGCCCAGATGGACTACCTG___AACCCCAATGTCTGGGGCCTGAAGGGCCATCTCTATTTTCTGAGTGGAAATCATTCTGAGGCCAAGGCATGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14302 LHFPL5::CLPSL1 ENSG00000197753.11::ENSG00000204140.10 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LHFPL5 ENSG00000197753.11 protein_coding + + chr6:35797206-35845397:+ chr6:35797459:+ chr6:35764983-35813174:+ chr6:35765236:+ CLPSL1 ENSG00000204140.10 protein_coding + + chr6:35781019-35793675:+ chr6:35786998:+ chr6:35748796-35761452:+ chr6:35754775:+ chr6:35799012,chr6:35799010 chr6:35786788,chr6:35786783 NA NA chr6:35766789,chr6:35766787 chr6:35754565,chr6:35754560 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none Colipase(100%),Colipase_C(100%)| 2 0 1 15 128 ENST00000651132.1 ENST00000373861.6 downstream upstream none CACCTCAGTACTGCCTAAG___AGGCATAGGACAGGACATGGAAGTAAACAGAGGGATGCAAGATGCCACTCCTCCCAGCCCCTGCCAGTCCAGGTGGAGACAT...GGAGCTGCATAGGCCACAGAGAGGGCGACAAGCAGGAGGATCAGGATCTTCTCCATG___GGCTGGCCaTGGGCAGAGGCACAGCTGTGGCCAATCTGCTGTGGGGCGGTTCCTGATAAGGAAACTGG|GAGCTCAAGGAGTCTTGCATCCGGAACCAGGACTGCGAGACTGGCTGCTGCCAACGTGCTCCAGACAATTGCGAGTCGCAtTGCGCGGAGAAGGGGTCCGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14305 ENSG00000287946::EMC8 ENSG00000287946.1::ENSG00000131148.9 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000287946 ENSG00000287946.1 lncRNA - - chr16:85345271-85352961:- chr16:85352675:- chr16:85378877-85386567:- chr16:85386281:- EMC8 ENSG00000131148.9 protein_coding - - chr16:85771758-85799608:- chr16:85781280:- chr16:85805364-85833214:- chr16:85814886:- chr16:85350795,chr16:85350804,chr16:85350838 chr16:85784626,chr16:85784633,chr16:85785008 NA NA chr16:85384401,chr16:85384410,chr16:85384444 chr16:85818232,chr16:85818239,chr16:85818614 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Uncharacterised_protein_family_(UPF0172)(49%) |UPF0172(7%) 1 0 1 1 582 ENST00000653751.1 ENST00000435200.2 upstream downstream none GCGGCGGCACCTCAGGCCAGCACACTTGATTCATTCATCCACTCACTCAGGGCCCAGG___CTGGCCTGGACTCCCAGGGGAGCCTGGTCAATATTAATGGACA...GTTTTGTGATTATGGATTATCTCCTGCTCAGCACCATCTTGAAGGTGGAGACAAAAGTTCTCAGCCAG|TCCAAACCAGGTTGCAGAGAAGGTGGCCTCCAGAATCGCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14310 CDCA8::GRIK3 ENSG00000134690.11::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1400 TRUE 2514 TRUE 974 CDCA8 ENSG00000134690.11 protein_coding + + chr1:37692481-37709719:+ chr1:37693033:+ chr1:38158153-38175391:+ chr1:38158705:+ GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36891096:- chr1:37261128-37500116:- chr1:37356697:- chr1:37697327,chr1:37697328 chr1:36904721,chr1:36904720 NA NA chr1:38162999,chr1:38163000 chr1:37370322,chr1:37370321 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Nbl1_/_Borealin_N_terminal(98%)|Ligand-gated_ion_channel(100%),Ligated_ion_channel_L-glutamate-_and_glycine-binding_site(100%),Receptor_family_ligand_binding_region(100%) Nbl1_Borealin_N(9%)|ANF_receptor(100%),Lig_chan(100%),Lig_chan-Glu_bd(100%),SBP_bac_3(100%) 37 54 86 359 222 ENST00000373055.6 ENST00000373091.8 downstream downstream duplicates(15),mismatches(9) AGCGAGGTTTTGCTCAGCCCTTGTCTCGGGACCGCAGGTACGTGCCTGGCGACTTCTTCGGGTGGTCCCCGTCCGCCCTCCTCGTCCCTACCCAGTTTCTTG...___CCTCCGCCGAGCGCCATGGCTCCTAGGAAGGGCAGTAGTCGGGTGGCCAAGACCAACTCCTTACGGAGGCGGAAGCTCGCCTCCTTTCTGAAAGACTTCGACCGTGAAG___TGGAAATACGAATCAAGCAAATTGAGTCAGACAGGCAGAACCTCCTCAAGGAGGTGGATAACCTCTACAACATCGAGATCCTGCGGCTCCCCAAGGCTCTGCGCGAGATGAACTGGCTTGACTACTTCG|GAGGAATCTTCGAGTATGCGGACGGCCCCAACGCCCAGGTCATGAATGCCGAGGAGCATGCCTTTCGATTTTCTGCCAACATCATCAACAGGAACAGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGGCGACCAAAAAGG___CCTGTGACCAGCTGGCACTGGGCGTGGTGGCGATCTTCGGCCCATCACAGGGCTCCTGCACCAATGCCGTCCAGT MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYF|gGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14311 CDCA8::GRIK3 ENSG00000134690.11::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1401 TRUE 2514 TRUE 974 CDCA8 ENSG00000134690.11 protein_coding + + chr1:37692481-37709719:+ chr1:37695950:+ chr1:38158153-38175391:+ chr1:38161622:+ GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36891096:- chr1:37261128-37500116:- chr1:37356697:- chr1:37697327,chr1:37697328 chr1:36904721,chr1:36904720 NA NA chr1:38162999,chr1:38163000 chr1:37370322,chr1:37370321 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Nbl1_/_Borealin_N_terminal(100%)|Ligand-gated_ion_channel(100%),Ligated_ion_channel_L-glutamate-_and_glycine-binding_site(100%),Receptor_family_ligand_binding_region(100%) Nbl1_Borealin_N(100%)|ANF_receptor(100%),Lig_chan(100%),Lig_chan-Glu_bd(100%),SBP_bac_3(100%) 16 25 92 335 222 ENST00000327331.2 ENST00000373091.8 downstream downstream duplicates(10),mismatches(7) TGGAAATACGAATCAAGCAAATTGAGTCAGACAGGCAGAACCTCCTCAAGGAGGTGGATAACCTCTACAACATCGAGATCCTGCGGCTCCCCAAGGCTCTGCGCGAGATGAACTGGCTTGACTACTTCG___CCCTTGGAGGAAACAAACAGGCCCTGGAAGAGGCGGCAACA|GAGGAATCTTCGAGTATGCGGACGGCCCCAACGCCCAGGTCATGAATGCCGAGGAGCATGCCTTTCGATTTTCTGCCAACATCATCAACAGGAACAGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGGCGACCAAAAAGG___CCTGTGACCAGCTGGCACTGGGCGTGGTGGCG EIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYFALGGNKQALEEAAT|eesssmrtaptprs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14312 CDCA8::GRIK3 ENSG00000134690.11::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2514 TRUE 974 CDCA8 ENSG00000134690.11 protein_coding + + chr1:37692481-37709719:+ chr1:37692578:+ chr1:38158153-38175391:+ chr1:38158250:+ GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36891096:- chr1:37261128-37500116:- chr1:37356697:- chr1:37697327,chr1:37697328 chr1:36904721,chr1:36904720 NA NA chr1:38162999,chr1:38163000 chr1:37370322,chr1:37370321 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Ligand-gated_ion_channel(100%),Ligated_ion_channel_L-glutamate-_and_glycine-binding_site(100%),Receptor_family_ligand_binding_region(100%) |ANF_receptor(100%),Lig_chan(100%),Lig_chan-Glu_bd(100%),SBP_bac_3(100%) 0 2 0 392 222 ENST00000327331.2 ENST00000373091.8 downstream downstream none GCGGTTGACTGTAGAGCCGCTCTCTCTCACTGGCACAGCGAGGTTTTGCTCAGCCCTTGTCTCGGGACCGCAG|GAGGAATCTTCGAGTATGCGGACGGCCCCAACGCCCAGGTCAT...GATTTTCTGCCAACATCATCAACAGGAACAGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGGCGACCAAAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14316 PVT1::MTF1 ENSG00000249859.14::ENSG00000188786.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1402 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ MTF1 ENSG00000188786.10 protein_coding - - chr1:37809574-37859592:- chr1:37817482:- chr1:38275246-38325264:- chr1:38283154:- chr8:127891130,chr8:127891130,chr8:127891121,chr8:127891118 chr1:37818792,chr1:37818787,chr1:37818794,chr1:37818794 NA NA chr8:128903376,chr8:128903376,chr8:128903367,chr8:128903364 chr1:38284464,chr1:38284459,chr1:38284466,chr1:38284466 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 16 6 20 143 61 ENST00000651587.1 ENST00000373036.5 downstream downstream duplicates(2),mismatches(5) AT?ATCTTGAGCCTAAAGATGAAGGAGAGTGGAG___GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTtAGCCTGATGGATTTACAGTGAaCTTCAG...GGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CAGCAAGCATCTAAAGTTGAGAAGGTGTTTTTTACCACTGCAGTACCAGTAGCCAGTAGCCCAG___GGAGCTCTGTCCAGCAGATTGGCCTCAGTGTTCCTGTGATCATCATCAAACAAGAAGAGGCATGTCAGTGTCAGTGTGCATGCCGGGACTCTGCAAAGGAGCGGGCATCCAGCAGGAGAAAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14319 GJB5::CCDC26 ENSG00000189280.3::ENSG00000229140.12 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GJB5 ENSG00000189280.3 protein_coding + + chr1:34755047-34758512:+ chr1:34755195:+ chr1:35220648-35224113:+ chr1:35220796:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128800147:- chr8:129646445-130696016:- chr8:129812393:- chr1:34755907,chr1:34755905 chr8:128804564,chr8:128804566 NA NA chr1:35221508,chr1:35221506 chr8:129816810,chr8:129816812 NA NA sense sense unknown 5'UTR/splice-site intron translocation high none none UPF0767(26%)| 4 1 6 128 3 ENST00000338513.1 unknown downstream downstream none CTCTGTCCTGGAAACAGGCTTCAACGGGCTTCCCCGAAAACCTTCCCCGCTTCTGGATATGAAATTCgAGCTGCTTGCTGAGTCCTATTGCCGGCTGCTGGGAGCCAGGAGAGCCCTGAGGAGTAGTCACTCAG|AGAAAGTATCATCTGCCAGGATTCTCAGTCCTGGACAGCAAGCAGTTAACCCTGGGGAAGGGAGAAAGGAGAAGACAATGGAGGAATGGTCTTCATTTCCAGGGGCATCTGCTTCCCAAAATGAAACATTTGGAAGTTTTTTGAGGGCTCAAGAAGGGAGCTCTAAAATGCAACATGTGAAGTGAGGTTATTTAAATTCTGATCTAACTGTGTGGCCTATCTTCATGCCTGCATTAAAATTGTTCAGACTTTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14320 ENSG00000285622::TDRD5 ENSG00000285622.2::ENSG00000162782.16 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285622 ENSG00000285622.2 lncRNA - - chr1:168695874-169103296:- chr1:169017813:- chr1:168665112-169072534:- chr1:168987051:- TDRD5 ENSG00000162782.16 protein_coding + + chr1:179591613-179691272:+ chr1:179690696:+ chr1:179560748-179660407:+ chr1:179659831:+ chr1:168991165,chr1:168991171 chr1:179684820,chr1:179684814 NA NA chr1:168960403,chr1:168960409 chr1:179653955,chr1:179653949 NA NA sense sense unknown intron CDS/splice-site inversion high none none none 3 2 4 13 7 ENST00000650631.1 ENST00000367614.5 upstream upstream none GGAGACTGAAGCATCTAGAGTTGGAGTAATTTCCACAAGATCACAG___AGGCAAGATTTCACTCTGTCACCCAGACTGGAGTGCAGTGGCACAAACATAGCTC...CCTGTCTTCTGTGATCTGCTGCCATTGCACACACCCCTGTGACGTTCTCCTATTGCCTCATTAGATGTTTACACCTGTGCCTCCCCCAG___AATCCCAGTCCTCTCTCTCTCACTGACCCCGAAGATAAGCATTGGAAAGGGGAGCTTTGGGGAAATGAATCTGCCCTGTCATCTGCGTATAGAGCTAATCTTAAATCCCAACTGCCAAATGGATCCTGAGGTGTCAGAAACTCTCCCGAGATAAGGGGGCTTCTAGCAACCATCTGCATTCTGGACCCAG|TGGAAAGCTCACCAGAGATCCTAAAGAATGAAGATTTTTCTAGCAGCCGTGCTATTACATTGTACAAAGACAAGCGTCAAGAATCTGTAGACCAGCTGTCTTTGATTTTGTCTTATGAGTGCCAGATTTCTCAGAAGCTCTACATTCCTCGAAGTACAGCCACTGCTGCCTTAGGTGCTGCCGCACGGTTAGCTACATCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14321 LINC00970::TDRD5 ENSG00000203601.3::ENSG00000162782.16 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC00970 ENSG00000203601.3 lncRNA - - chr1:168903905-169087005:- chr1:169017813:- chr1:168873143-169056243:- chr1:168987051:- TDRD5 ENSG00000162782.16 protein_coding + + chr1:179591613-179691272:+ chr1:179690696:+ chr1:179560748-179660407:+ chr1:179659831:+ chr1:168991165,chr1:168991171 chr1:179684820,chr1:179684814 NA NA chr1:168960403,chr1:168960409 chr1:179653955,chr1:179653949 NA NA sense sense unknown intron CDS/splice-site inversion high none none none 3 2 4 13 7 ENST00000366408.3 ENST00000367614.5 upstream upstream none GGAGACTGAAGCATCTAGAGTTGGAGTAATTTCCACAAGATCACAG___AGGCAAGATTTCACTCTGTCACCCAGACTGGAGTGCAGTGGCACAAACATAGCTC...CCTGTCTTCTGTGATCTGCTGCCATTGCACACACCCCTGTGACGTTCTCCTATTGCCTCATTAGATGTTTACACCTGTGCCTCCCCCAG___AATCCCAGTCCTCTCTCTCTCACTGACCCCGAAGATAAGCATTGGAAAGGGGAGCTTTGGGGAAATGAATCTGCCCTGTCATCTGCGTATAGAGCTAATCTTAAATCCCAACTGCCAAATGGATCCTGAGGTGTCAGAAACTCTCCCGAGATAAGGGGGCTTCTAGCAACCATCTGCATTCTGGACCCAG|TGGAAAGCTCACCAGAGATCCTAAAGAATGAAGATTTTTCTAGCAGCCGTGCTATTACATTGTACAAAGACAAGCGTCAAGAATCTGTAGACCAGCTGTCTTTGATTTTGTCTTATGAGTGCCAGATTTCTCAGAAGCTCTACATTCCTCGAAGTACAGCCACTGCTGCCTTAGGTGCTGCCGCACGGTTAGCTACATCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14322 CHML::CHRM3-AS2 ENSG00000203668.3::ENSG00000233355.7 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHML ENSG00000203668.3 protein_coding - - chr1:241628851-241640369:- chr1:241639882:- chr1:241792153-241803671:- chr1:241803184:- CHRM3-AS2 ENSG00000233355.7 lncRNA - - chr1:239703381-239770130:- chr1:239714264:- chr1:239866681-239933430:- chr1:239877564:- chr1:241636328 chr1:239716821 NA NA chr1:241799630 chr1:239880121 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none 7_transmembrane_receptor_(rhodopsin_family)(100%)| 7tm_1(0%)| 0 3 5 249 6 ENST00000638160.1 ENST00000600831.5 upstream downstream duplicates(1) CGCGCCCCTCTTCAGCCCCGGCACCTACGAGCGCCTGGCGCTGCTGCTGGGCTCCATTGGGCTGCTGGGCGTCGGCAACAACCTGCTGGTGCTCGTCCTCTACTACAAGTTCCAGCGGCTCCGCACTCCCACTCACCTCCTCCTGGTCAACATCAGCCTCAGCGACCTGCTGGTGTCCCTCTTCGGGGTCACCTTTACCTTCGTGTCCTGCCTGAGGAACGGCTGGGTGTGGGACACCGTGGGCTGCGTGTGGGACGGGTTTAGCGGCAGCCTCTTCG|ATGACGAGCTCCATGAGGGCCAAGGCTCTCCATTCTTGTTCACCACTGCACACTCAGGAGCTCATGGCATGCTGGCTGTGCTAGTTCT___ATCCTCAACAGAATAATTGCTGACAAACTCTCTTGCCCAGAAAATGTCTACTGGAATTATGGAGTACAAAAAAACTACAAAAGCAATGAAAAAAAGAAGGATGTTTTATTTACATCCTATTTCAAAACCATTGCTTTCTTGCTATTGTATGTCTCTGCAGGCCCAATATCGC APLFSPGTYERLALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDTVGCVWDGFSGSLF|ddelhegqgspflfttahsgahgmlavlvlsste* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14323 OPN3::CHRM3-AS2 ENSG00000054277.14::ENSG00000233355.7 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OPN3 ENSG00000054277.14 protein_coding - - chr1:241590102-241677376:- chr1:241639882:- chr1:241753404-241840678:- chr1:241803184:- CHRM3-AS2 ENSG00000233355.7 lncRNA - - chr1:239703381-239770130:- chr1:239714264:- chr1:239866681-239933430:- chr1:239877564:- chr1:241636328 chr1:239716821 NA NA chr1:241799630 chr1:239880121 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none 7_transmembrane_receptor_(rhodopsin_family)(41%)| 7tm_1(0%)| 0 3 5 249 6 ENST00000366554.3 ENST00000600831.5 upstream downstream duplicates(1) CGCGCCCCTCTTCAGCCCCGGCACCTACGAGCGCCTGGCGCTGCTGCTGGGCTCCATTGGGCTGCTGGGCGTCGGCAACAACCTGCTGGTGCTCGTCCTCTACTACAAGTTCCAGCGGCTCCGCACTCCCACTCACCTCCTCCTGGTCAACATCAGCCTCAGCGACCTGCTGGTGTCCCTCTTCGGGGTCACCTTTACCTTCGTGTCCTGCCTGAGGAACGGCTGGGTGTGGGACACCGTGGGCTGCGTGTGGGACGGGTTTAGCGGCAGCCTCTTCG|ATGACGAGCTCCATGAGGGCCAAGGCTCTCCATTCTTGTTCACCACTGCACACTCAGGAGCTCATGGCATGCTGGCTGTGCTAGTTCT___ATCCTCAACAGAATAATTGCTGACAAACTCTCTTGCCCAGAAAATGTCTACTGGAATTATGGAGTACAAAAAAACTACAAAAGCAATGAAAAAAAGAAGGATGTTTTATTTACATCCTATTTCAAAACCATTGCTTTCTTGCTATTGTATGTCTCTGCAGGCCCAATATCGC APLFSPGTYERLALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSCLRNGWVWDTVGCVWDGFSGSLF|ddelhegqgspflfttahsgahgmlavlvlsste* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14326 DLGAP3::LINC01226 ENSG00000116544.12::ENSG00000284543.1 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DLGAP3 ENSG00000116544.12 protein_coding - - chr1:34865436-34929650:- chr1:34884978:- chr1:35331037-35395251:- chr1:35350579:- LINC01226 ENSG00000284543.1 lncRNA + + chr1:31506226-31583306:+ chr1:31563085:+ chr1:31971827-32048907:+ chr1:32028686:+ chr1:34883868,chr1:34883872,chr1:34883875 chr1:31554236,chr1:31554232,chr1:31554232 NA NA chr1:35349469,chr1:35349473,chr1:35349476 chr1:32019837,chr1:32019833,chr1:32019833 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Guanylate-kinase-associated_protein_(GKAP)_protein(11%)| GKAP(2%)| 0 2 1 6 32 ENST00000373347.6 unknown upstream upstream none GGCCGTCCATTGGGGTGCAG___GTGGAGACGATCTCAGATTCGGACACCGAGAACAGGAGCCGGAGGGAGTTCCACTCTATTGGCGTGCAGGTGGAAGAGGACAAGAG|GAAGGGCTTTATGACCAGTGTGTTGTGCTGACCTCCTGTCTCATCCTGTGACCAAGAATGCCTAACCTCC...GGGATCCTGCTTTGCACTCACTGATGAGAAAATGACAAGGGACACCTCCAGCTCCAAGAAACTATGGATTTTAAAAAATGAAAGTATAAAAGCCCCAGAAGAAAACACAGGAGAATGGCCAGCCGTGGTGGCTCACGCCTATAA PSIGVQVETISDSDTENRSRREFHSIGVQVEEDKr|kgfmtsvlc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14331 MTAP::ENSG00000284418 ENSG00000099810.21::ENSG00000284418.3 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21866842:+ chr9:21802635-21937650:+ chr9:21866841:+ ENSG00000284418 ENSG00000284418.3 lncRNA - + chr9:22703516-23438700:- chr9:23122525:+ chr9:22703515-23438698:- chr9:23122524:+ chr9:21867717 chr9:23113126 NA NA chr9:21867716 chr9:23113125 NA NA sense antisense stop-codon 3'UTR intron deletion/5'-5' medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 7 7 9 70 19 ENST00000644715.2 unknown downstream upstream mismappers(1),mismatches(2) gCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGA...GCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___AAAAAATCTGCTGGAATGGCACTGAATTTTTAGGTCGATTTGGGAAGAATTGACAATATTGAACCTTTCAATCGATGGACATG|GGCAAAGGAACAGTTTCAGACCCGTGCAAGCTTGTCTAGACTCAGCTCTTCATAATTATGATTTCGTTTCTATGGACAGAGGGAAAAAGAAAAACAATTTCTACTTTCTATATATCTGAACTTGAGGACTACCAGTAAATACAGAATATTCATAATTCATACAATAAAACCTAACTCCATTTTGCATACAACTGTTCACAACTATTATTTACAACTATCAGCTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14332 TOGARAM1::PRPF39 ENSG00000198718.13::ENSG00000185246.18 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2517 TRUE 975 TOGARAM1 ENSG00000198718.13 protein_coding + + chr14:44962190-45074431:+ chr14:45071798:+ chr14:45431393-45543634:+ chr14:45541001:+ PRPF39 ENSG00000185246.18 protein_coding + + chr14:45084107-45116282:+ chr14:45095221:+ chr14:45553310-45585485:+ chr14:45564424:+ chr14:45072566 chr14:45090386 NA NA chr14:45541769 chr14:45559589 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none none none 6 3 5 48 168 ENST00000361462.7 ENST00000355765.11 downstream upstream duplicates(2) CCtTTAGATACTCCTTCAGCAAAAGGAAGACGATCTCATACTGGCAGTGTTGGAAATACAAGATCATCATCTGTTTCTAGAGATGCTTTCAATTCAGCTGA...GGAAACATTGTGAAG___ATTTTTGATGCTTTTAAATCTCGACTTCATGATTCTAATAGTAAAGTAAATCTGGTGGCTCTGGAAACAATGCACAAAATGATTCCTCTACTTAGAGACCACTTATCTCCTATAATCAACATGCT...GCTGCTACAAATGTTGTTCAGGCACTGAGTCAGCATGTAG___ACAATTACTTACTTCTACAGCCATTTTGCACAAAAGCTCAGTTTTTAAATGGAAAAGCAAAACAGGACATGACGGAAAAGCTTGCTG|ATCGTTAACTGAAGACAATATGCAAAATTCTCACATGGATGAATACAGAAATTCTAGTAATGGCAGCACAGGCAACAGTTCAGAGGTAGTGGTAGAACATCCTACTGATTTCAGTACTGAGATTATGAACGTTACAGAAATGGAACAGTCACCTGATGACTCTCCCAATGTGAATGCATCTACAGAAGAAACTGAAATGGCAAGTGCTGTGGACCTTCCAGTGACGCTGACAGAAACAGAAGCAAATTTC...___AATCACTTGATGGC AATNVVQALSQHVDNYLLLQPFCTKAQFLNGKAKQDMTEKLA|dr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14333 TOGARAM1::PRPF39 ENSG00000198718.13::ENSG00000185246.18 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2517 TRUE 975 TOGARAM1 ENSG00000198718.13 protein_coding + + chr14:44962190-45074431:+ chr14:45068643:+ chr14:45431393-45543634:+ chr14:45537846:+ PRPF39 ENSG00000185246.18 protein_coding + + chr14:45084107-45116282:+ chr14:45095221:+ chr14:45553310-45585485:+ chr14:45564424:+ chr14:45072566 chr14:45090386 NA NA chr14:45541769 chr14:45559589 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none none none 0 1 5 37 168 ENST00000361462.7 ENST00000355765.11 downstream upstream duplicates(1) ATTTTTGATGCTTTTAAATCTCGACTTCATGATTCTAATAGTAAAGTAAATCTGGTGGCTCTGGAAACAATGCACAAAATGATTCCTCTACTTAGAGACCACTTATCTCCTATAATCAACATGCTAATTCCAGCA...CTGAATTCCAAGAATCCAGGCATCTATGCGGCTGCTACAAATGTTGTTCAGGCACTGAGTCAGCATGTAG|ATCGTTAACTGAAGACAATATGCAAAATTCTCACATGGATGAATACAGAAATTCTAGTAATGGCAGCACAGGCAACAGTTCAGAGGTAGTGGTAGAACATCCTACTGATTTCAGTACTGAGATTATGAACGTTACAGAAATG...CACCTGATGACTCTCCCAATGTGAATGCATCTACAGAAGAAACTGAAATGGCAAGTGCTGTGGACCTTCCAGTGACGCTGACAGAAACAGAAGCAAATTTCCC LNSKNPGIYAAATNVVQALSQHV|dr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14334 SMIM12::DLGAP3 ENSG00000163866.9::ENSG00000116544.12 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1405 FALSE NA FALSE NA SMIM12 ENSG00000163866.9 protein_coding - - chr1:34712737-34859755:- chr1:34855771:- chr1:35178338-35325356:- chr1:35321372:- DLGAP3 ENSG00000116544.12 protein_coding - - chr1:34865436-34929650:- chr1:34886285:- chr1:35331037-35395251:- chr1:35351886:- chr1:34747116,chr1:34747119 chr1:34893438,chr1:34893438 NA NA chr1:35212717,chr1:35212720 chr1:35359039,chr1:35359039 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none UPF0767_family(79%)|Guanylate-kinase-associated_protein_(GKAP)_protein(100%) UPF0767(0%)|GKAP(100%) 1 7 3 5152 16 ENST00000426886.1 ENST00000373347.6 upstream downstream duplicates(1) CTGGGCCGCAG___ATGTCATGTGGCCTGTGTTTTGGACCGTGGTTCGTACCTATGCTCCTTATGTCACATTCCCTGTTGCCTTCGTGGTCGGGGCTGTGGGTTACCACCTGGAATGGTTCATCAGGGGAAAGGACCCCCAGCCCGTGGAGGAGGAAAAGAGCATCTCAGAGCGCCGGGAGGATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAGGTG|CTCAGCGATGAGTTGAACCAGCAGCTGGAGGCCGTGTGCGGGTCGGTGTTTGGGGAGCTGGAGTCCCAGGCCGTGGACGCCCTGGACCTGCCCGGCTGTTTCCGCATGCGGAGCCACAGCTACCTCCGGGCCATCCAGGCCGGCTGCTCTCAAGACGACGACTGCCTGCCCCTCCTCGCTACCCCTGCCGCTGTCTCAGGGAGGCCCGGCTCCT___CCTTCAACTTCAGAAAGGCCCCGCCCCCCATCCCGCCGGGAAGCCAGaCCCCG MWPVFWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKLDELLGKDHTQV|LSDELNQQLEAVCGSVFGELESQAVDALDLPGCFRMRSHSYLRAIQAGCSQDDDCLPLLATPAAVSGRPGSSFNFRKAPPPIPPGSQt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14367 ARGLU1::ENSG00000284966 ENSG00000134884.15::ENSG00000284966.3 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARGLU1 ENSG00000134884.15 protein_coding - - chr13:106541673-106568137:- chr13:106557048:- chr13:107194021-107220485:- chr13:107209396:- ENSG00000284966 ENSG00000284966.3 lncRNA + - chr13:106491147-106521630:+ chr13:106518936:- chr13:107143495-107173978:+ chr13:107171284:- chr13:106548800,chr13:106548802 chr13:106520468,chr13:106520467 NA NA chr13:107201148,chr13:107201150 chr13:107172816,chr13:107172815 NA NA sense antisense unknown CDS/splice-site exon deletion/read-through/5'-5' low none Arginine_and_glutamate-rich_1(66%)| ARGLU(16%)| 1 2 4 495 3 ENST00000375926.5 unknown upstream downstream mismatches(1) TGAACGAGAAGTTCTCCGAAGGGTGGAGGAAGCCAAACGCATCATGGAAAAGCAGTTGCTCGAAGAACTCGAGCGACAGAGACAAGCTGAGCTTGCCGCAC...CGTATGGCAGCCGAGGAGCACACTCTGCAGGACACTGGACAAGACA___GAGGAAGAACGTGCAAAACGTGAGGAGCTAGAGCGAATACTGGAAGAGAATAACCGAAAAATTGCAGAAGCACAAGCCAAACTG|AGACTACAGCAGCATCAAGTGGCCCCCCAGCGATTTGGGTTTTCTTCTCGGTTAATCTACACTCTTTGGCCAACCGTGAGAAAACTTGTAAGAAGGC...AGGACTGGTACTATACCCACAGATAGGAGACAAATTGGATATTATTTGCCCCAAAGTGGACTCTAAAACTGTTGGCCAGTATGAATATTATAAAGTTTATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14373 DHX38::PMFBP1 ENSG00000140829.12::ENSG00000118557.16 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DHX38 ENSG00000140829.12 protein_coding + + chr16:72093613-72112912:+ chr16:72094051:+ chr16:72127512-72146811:+ chr16:72127950:+ PMFBP1 ENSG00000118557.16 protein_coding - + chr16:72112157-72176878:- chr16:72136781:+ chr16:72146056-72210777:- chr16:72170680:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site CDS deletion/read-through/5'-5' low none none none 1 0 3 283 4 ENST00000268482.8 unknown downstream upstream none ATAGAGGGGGCGCGCAAAGTATTAAGGGACAATAATGGCCGCTTTCAAGGTGTGGATTTTGGCTCCTTGAGCCTGTCTGAGCGAGGGGTGGCAGCGCCGGCGCCCCAGAATCCGGGACAGAAGGGTCCCAAGAGTCGCGCTTGGTGAG|GCACTGGCTGTCTTTCTGCTCCTGCAAGTGCT...ATGGAGAGTGCTTTCTAAAATGCCCAGCATCCACAGTCAACA___AGAATCACCTGTAGGTGTAGGAATAAATCCACATTGAGCCCATGGAAGCACGTAATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14375 ZNF503-AS2::LRMDA ENSG00000237149.5::ENSG00000148655.16 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF503-AS2 ENSG00000237149.5 lncRNA + + chr10:75401519-75408982:+ chr10:75402261:+ chr10:77161277-77168740:+ chr10:77162019:+ LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:76036008:+ chr10:77191382-78319926:+ chr10:77795766:+ chr10:75406481,chr10:75406481,chr10:75406479,chr10:75406474 chr10:75579978,chr10:75579980,chr10:75579973,chr10:75579973 NA NA chr10:77166239,chr10:77166239,chr10:77166237,chr10:77166232 chr10:77339736,chr10:77339738,chr10:77339731,chr10:77339731 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Leucine-rich_repeat(83%) |LRR_9(3%) 1 0 1 29 19 ENST00000466942.2 ENST00000611255.5 downstream upstream none GGAACAGACTGCGGGGGGgGTCCAGAAGGAGCACCGGTGGGAGTGTGGACACCGGCCGGACTGTCAACTCCAGGGGCGAAGGGAACCTGCACACCCAGTGTTTTTTCCTTCGCAGTAATCGAGATCCCGCGCGGCGCAGCGCAGCCACCAGG|GTCACTGGAAGGACTGAGCGCATTCAGGAGCCTGGAGGAACTCATCTTGGACAACAATCAGCTGGGGGACGACCTTGTGTTGCCAGGGTTACCCAGACTGCATACCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14376 ENSG00000228826::GRIK3 ENSG00000228826.3::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000228826 ENSG00000228826.3 lncRNA - - chr1:121494329-121511588:- chr1:121509741:- chr1:121236127-121253386:- chr1:121251539:- GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36806326:- chr1:37261128-37500116:- chr1:37271927:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Ligand-gated_ion_channel(50%) |Lig_chan(6%),SBP_bac_3(3%) 1 0 1 4 3 ENST00000437523.3 ENST00000373091.8 upstream downstream duplicates(1) CGCAGACTTCAGGAATGAAGCCGCAGACACTCGCA___GTTTGAGGATACATGTGAAATTCCTGTCATGGGATTTTGTTGTACAGATTATTTCATCACTCAG|AAATCCAAGATCTCCACCTTCGAGAAGATGTGGGCCTTCATGAGCAGCAAGCCATCGGCGCTGGTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14388 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1406 TRUE 2527 TRUE 976 ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151615443:+ chr6:151815152-151942328:+ chr6:151936578:+ chr6:151711450,chr6:151711450 chr6:151604362,chr6:151604359 NA NA chr6:152032585,chr6:152032585 chr6:151925497,chr6:151925494 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 69 58 78 178 457 ENST00000440973.5 ENST00000239374.8 downstream upstream duplicates(15),mismatches(14) CTCAGAAGCTCTTTAACAGGCTCGAAAGGTCCATGCTCCTTTCTCCTGCCCATTCTATAGCATAAGAAGACAGTCTCTGAGTGATAATCTTCTCTTCAA___GAAGAAGAAAACTAGGAAGGAGTAAGCACAAAGATCTCTTCACATTCTCCGGGACTGCGGTACCAAATATCAGCACAGCACTTCTTGAAAAAGGATGTAGATTTTAATCTGAACTTTGAACCATCACTGAG|ATTAAAACTTTGGAACAGACTAAAGCCATTGAAGATCTAAACAAATCCAGAGACCAACTGGAGAAGATGAAGGAGAAAGCTGAGAAAAAGCTCATGTCTGTCAAGTCAGAACTGGATACCACAGAACATGAGGCTAAGGAGAATAAAGAAAGGGCCAGAAACATGATAGAAGTGGTAACCAGTGAAATGAAGACACTAAAAAAATCTCTGGAAGAAGCAGAAAAGAGAGAAAAGCAG___CTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 14389 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2527 TRUE 976 ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151690664:+ chr6:151977826-152450754:+ chr6:152011799:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151615443:+ chr6:151815152-151942328:+ chr6:151936578:+ chr6:151711450,chr6:151711450 chr6:151604362,chr6:151604359 NA NA chr6:152032585,chr6:152032585 chr6:151925497,chr6:151925494 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 0 1 19 230 457 ENST00000440973.5 ENST00000239374.8 downstream upstream duplicates(2),mismatches(6) ACGGATTTTACCAAAACTGAAAATGCAGGCTCCATGCTCAGAAGCTCTTTAACAGGCTCGAAAGGTCCATGCTCCTTTCTCCTGCCCATTCTATAGCATAAGAAGACAGTCTCTGAGTGATAATCTTCTCTTCAA|ATTAAAACTTTGGAACAGACTAAAGCCATTGAAGATCTAAACAAATCCAGAGACCAACTGGAGAAGATGAAGGAGAAAGCTGAGAAAAAGCTCATGTCTGTCAAGTCAGAACTGGATACCACAGAACATGAGGCTAAGGAGAATAAAGAAAGGGCCAGAAACATGATAGAAGTGGTAACCAGTGAAATGAAGACACTAAAAAAATCTCTGGAAGAAGCAGAAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 14398 IFFO2::MFN2 ENSG00000169991.11::ENSG00000116688.18 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IFFO2 ENSG00000169991.11 protein_coding - - chr1:18904280-18956676:- chr1:18916903:- chr1:19230774-19283170:- chr1:19243397:- MFN2 ENSG00000116688.18 protein_coding + - chr1:11980181-12015211:+ chr1:11992622:- chr1:12040238-12075268:+ chr1:12052679:- chr1:18914791,chr1:18914796 chr1:11994937,chr1:11994939 NA NA chr1:19241285,chr1:19241290 chr1:12054994,chr1:12054996 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none none none 37 47 15 251 656 ENST00000455833.7 unknown upstream downstream duplicates(6),mismatches(3) GTCGCACAGCAGCGGAACTCAGAAGACGTGTCCAAGATCTTCCAG___GTGGTCCCCAAAAAGAAAGAGCGTAAGGTGGCTTCCGATGATGACATCTCTGAGCAGGACGGGGAGGTGAACCGGTTCTCGGACGATGAGGTCGGCTCCATGAACATCACCGATGAGATGAAGCGCATGTTTAACCAGCT|GTAACCTTTGACGTCCAGAACCTGTTCTTCTGTGGTAACGGGGTCCAGTTCTGCATTCCTGTACGTGTCTGGAGGTGGGGATTGAAAATGGGTCACCACGTGGTCAGAGGAGTTCCACAGTCCCAAGTCTGGAAGGGCCAGAGCGCCGGCCCTGCTTACCCT VAQQRNSEDVSKIFQVVPKKKERKVASDDDISEQDGEVNRFSDDEVGSMNITDEMKRMFNQl|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14417 PATJ::ENSG00000272449 ENSG00000132849.22::ENSG00000272449.3 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PATJ ENSG00000132849.22 protein_coding + + chr1:61742477-62178675:+ chr1:61808530:+ chr1:62208149-62644347:+ chr1:62274202:+ ENSG00000272449 ENSG00000272449.3 lncRNA + - chr1:2530064-2547471:+ chr1:2541605:- chr1:2461503-2478910:+ chr1:2473044:- chr1:61810330 chr1:2546836 NA NA chr1:62276002 chr1:2478275 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none L27_2(100%),PDZ_domain(26%)| L27_2(100%),PDZ(10%),PDZ_6(11%)| 29 25 32 531 172 ENST00000371158.6 unknown downstream downstream duplicates(5),mismatches(28) ATGACAACATACAAGCCTTAGAAAAATTGG___AAAAAGTCCCAGACTCTCCAGAAAATGAGCTGAAATCCAGATGGGAAAACCTGTTGGGTCCTGATTATGAAGTAATG___GTTGCTACTTTGGACACACAGATTGCAGATGATGCTGAGTTACAGAAATATTCAAAG|CTGGTGCTGAGACCGGCCGACCTGTAATCCCAGCTACTCAGGAGGCCAAGGCAGGAGGATCGCTTGAGCCCTGGAGTTCAAGACCAGCCTGGGCAACACAGAGAGACCC?GTCa?AAAAAAAAAAAAAAAAAAAAAGTAAAAAACACTCTTGGGTGGGGGTGGGGAGTGGTACAAAATCAGTGAGAGGCCCAGACGCTCACCCCTTTTCTAAAAGTTTTACAAATATTAACGCTTCTGATCCTCCCGAAACC DNIQALEKLEKVPDSPENELKSRWENLLGPDYEVMVATLDTQIADDAELQKYSK|lvlrpadl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14418 JAK1::GRHL3 ENSG00000162434.14::ENSG00000158055.17 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA JAK1 ENSG00000162434.14 protein_coding - - chr1:64833223-65067754:- chr1:64850804:- chr1:65298906-65533437:- chr1:65316487:- GRHL3 ENSG00000158055.17 protein_coding + - chr1:24199558-24364482:+ chr1:24290462:- chr1:24526048-24690972:+ chr1:24616952:- chr1:64849051 chr1:24294966 NA NA chr1:65314734 chr1:24621456 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none FERM_F1_ubiquitin-like_domain(100%),FERM_F2_acyl-CoA_binding_protein-like_domain(100%),Jak1_pleckstrin_homology-like_domain(100%),Protein_kinase_domain(0%)| FERM_F1(100%),FERM_F2(100%),Jak1_Phl(100%),PK_Tyr_Ser-Thr(0%)| 17 17 25 910 104 ENST00000672751.2 unknown upstream downstream duplicates(3),mismappers(1),mismatches(16) CGCACGGATAACATCAGCTTCATGCTAAAACGCTGCTGCCAGCCCAAGCCCCGAG___AAATCTCCAACCTGCTGGTGGCTACTAAGAAAGCCCAGGAGTGGCAGCCCGTCTACCCCATGAGCCAGCTGAGTTTCGATCGGATCCTCAAGAAGGATCTGGTGCAG|TAGAGTTTCATCATGCTGGCCCTGCTGGTCTTAAACTCCCGACCTCGAGCAATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCGTGAACCACCACGCCCGGCCCACAAATACATATTGAGTGCTAACTCTGTTCATCGCTTTCTATTCCGTGTCAGGGAAGTTTGGGTGAGACACCCAGTACACTCTAGG RTDNISFMLKRCCQPKPREISNLLVATKKAQEWQPVYPMSQLSFDRILKKDLVQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3671,hsa-mir-101-1 chr1:65057755-65057842:-,chr1:65058434-65058508:- FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase JAK1 TK Jak P23458 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Janus kinase 1 1 Yes ALL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 14421 RNF187::OBSCN ENSG00000168159.15::ENSG00000154358.23 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2536 TRUE 977 RNF187 ENSG00000168159.15 protein_coding + + chr1:228487382-228499899:+ chr1:228489050:+ chr1:228675083-228687600:+ chr1:228676751:+ OBSCN ENSG00000154358.23 protein_coding + + chr1:228208044-228378876:+ chr1:228350839:+ chr1:228395745-228566577:+ chr1:228538540:+ chr1:228491991,chr1:228491988 chr1:228350770,chr1:228350764 NA NA chr1:228679692,chr1:228679689 chr1:228538471,chr1:228538465 NA NA sense sense unknown CDS/splice-site intron duplication high none Zinc_finger__C3HC4_type_(RING_finger)(100%)|Immunoglobulin_I-set_domain(5%),Protein_kinase_domain(100%) zf-C3HC4(100%),zf-C3HC4_4(100%),zf-RING_UBOX(100%)|I-set(18%),Ig_2(22%),Ig_3(29%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(19%) 1 33 8 2533 145 ENST00000305943.9 ENST00000570156.7 downstream upstream inconsistently_clipped(1),mismatches(8) GCGCTGGAGGAAGGCGCTGCGCGGCAAG___GAGAACAAGGGGTCTGTGGAAATCATGAGAAAGGACTTGAATGACGCCCGGGACCTGCATGGCCAGGCAGAGTCAGCAGCTGCAGTGTGGA|AGTCCCACCACGGTTCGTGAACAAGGTCCGGGCCTCACCCTTTGTGGAGGGAGAGGACGCCCAGTTCACCTGCACCATCGAAGGCGCCCCGTACCCGCAGATCAG___GTGGTACAAGGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Obscurin CAMK Trio Q5VST9 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14422 RNF187::OBSCN ENSG00000168159.15::ENSG00000154358.23 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2536 TRUE 977 RNF187 ENSG00000168159.15 protein_coding + + chr1:228487382-228499899:+ chr1:228489050:+ chr1:228675083-228687600:+ chr1:228676751:+ OBSCN ENSG00000154358.23 protein_coding + + chr1:228208044-228378876:+ chr1:228352949:+ chr1:228395745-228566577:+ chr1:228540650:+ chr1:228491991,chr1:228491988 chr1:228350770,chr1:228350764 NA NA chr1:228679692,chr1:228679689 chr1:228538471,chr1:228538465 NA NA sense sense unknown CDS/splice-site intron duplication medium none Zinc_finger__C3HC4_type_(RING_finger)(100%)|Immunoglobulin_I-set_domain(4%),Protein_kinase_domain(100%) zf-C3HC4(100%),zf-C3HC4_4(100%),zf-RING_UBOX(100%)|I-set(4%),Ig_2(3%),Ig_3(4%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(4%) 0 2 2 2533 96 ENST00000305943.9 ENST00000570156.7 downstream upstream none CCGCGCTGGAGGAAGGCGCTGCGCGGCAAG___GAGAACAAGGGGTCTGTGGAAATCATGAGAAAGGACTTGAATGACGCCCGGGACCTGCATGGCCAGGCAGAGTCAGCAGCTGCAGTGTGGA|AGCTGGTGAACCGGCTGGGCTCCGCGCGGGCTtGTGCGGgGCTGCGCcTTCAGAGaCCCATGCTGCAGGaCCAGG...AGCAGCTCGTGGCTGCAGTGGAAG___ACACCACCCTGGAGCGAGCGGACCAGGAGGTCACATCTGTCCTGAAGAGACTGCTGGGCCCCAAGGCGCCAGGCCCCTCCACAGGGGACCTCACTGGCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Obscurin CAMK Trio Q5VST9 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14423 RNF187::OBSCN ENSG00000168159.15::ENSG00000154358.23 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2536 TRUE 977 RNF187 ENSG00000168159.15 protein_coding + + chr1:228487382-228499899:+ chr1:228489052:+ chr1:228675083-228687600:+ chr1:228676753:+ OBSCN ENSG00000154358.23 protein_coding + + chr1:228208044-228378876:+ chr1:228356151:+ chr1:228395745-228566577:+ chr1:228543852:+ chr1:228491991,chr1:228491988 chr1:228350770,chr1:228350764 NA NA chr1:228679692,chr1:228679689 chr1:228538471,chr1:228538465 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication low none Zinc_finger__C3HC4_type_(RING_finger)(100%)|Immunoglobulin_I-set_domain(3%),Protein_kinase_domain(100%) zf-C3HC4(100%),zf-C3HC4_4(100%),zf-RING_UBOX(100%)|I-set(4%),Ig_2(3%),Ig_3(4%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(4%) 0 1 0 2533 79 ENST00000305943.9 ENST00000474237.2 downstream upstream none GTGGAAATCATGAGAAAGGACTTGAATGACGCCCGGGACCTGCATGGCCAGGCAGAGTCAGCAGCTGCAGTGTGGAAG|TCACTGAGCAAGAGACTAAAGTCCCCAAGAAAACCGTCATCATGTAAGTGCAGGCGTGTTCCTAACCTTCCTTCTGACTGCAGTGCCTCCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Obscurin CAMK Trio Q5VST9 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14424 RNF187::OBSCN ENSG00000168159.15::ENSG00000154358.23 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2536 TRUE 977 RNF187 ENSG00000168159.15 protein_coding + + chr1:228487382-228499899:+ chr1:228489050:+ chr1:228675083-228687600:+ chr1:228676751:+ OBSCN ENSG00000154358.23 protein_coding + + chr1:228208044-228378876:+ chr1:228362574:+ chr1:228395745-228566577:+ chr1:228550275:+ chr1:228491991,chr1:228491988 chr1:228350770,chr1:228350764 NA NA chr1:228679692,chr1:228679689 chr1:228538471,chr1:228538465 NA NA sense sense unknown CDS/splice-site intron duplication low none Zinc_finger__C3HC4_type_(RING_finger)(100%)|Immunoglobulin_I-set_domain(3%),Protein_kinase_domain(100%) zf-C3HC4(100%),zf-C3HC4_4(100%),zf-RING_UBOX(100%)|I-set(4%),Ig_2(3%),Ig_3(4%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(4%) 0 1 0 2533 49 ENST00000305943.9 ENST00000570156.7 downstream upstream none GTGGAAATCATGAGAAAtGACTTGAATGACGCCCGGGACCTGCATGGCCAGGCAGAGTCAGCAGCTGCAGTGTGGA|AGACACCACCCTGGAGCGAGCGGAC...AGGGGACCTCACTGGCCCTGGCCCCTGCCCCAGGGGGGCACCCGCACTCCAGGAAACCGGCTCCCAGCCCtCAGTCACCGGAACTTCGGAGGCACCTG___CCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Obscurin CAMK Trio Q5VST9 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14425 ZYG11A::ENSG00000203605 ENSG00000203995.11::ENSG00000203605.3 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2537 FALSE NA ZYG11A ENSG00000203995.11 protein_coding + + chr1:52842511-52894998:+ chr1:52867777:+ chr1:53308183-53360670:+ chr1:53333449:+ ENSG00000203605 ENSG00000203605.3 lncRNA + + chr1:63139250-63163153:+ chr1:63162747:+ chr1:63604921-63628824:+ chr1:63628418:+ chr1:52871891,chr1:52871892 chr1:63161930,chr1:63161928 NA NA chr1:53337563,chr1:53337564 chr1:63627601,chr1:63627599 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 14 12 12 147 97 ENST00000371532.5 ENST00000455038.1 downstream upstream duplicates(1),low_entropy(2),mismatches(3) CTGCCAAGTTTGTCATGAGATGGCTCTGTAAGCATGAAAACCCCAAGATGCAAACAATGGCAGTGAGTGTCACCTCTATTCTGGCTCTGCAG___CTCTCACCTGAGCAAACGGCACAGCTTGAAGAGCTTTTCATGGCAGTTAAG|GATGCAGATGATGCAGATGACATGAATGTTTTTCCTTCGCCTCAAACAGGGAGTCAAGTCGGAGAAGCAAGCATGAAAACAGAAACTAACCTTAAGCCAAAGCACAGGCCCTTAGCAATATTACTATATGCCCACCAGTCACCTGCCTGTGGAAATGAAATCATAACCATTCCCCTTTGCCCCGCTTCCTCTGTCACCC AKFVMRWLCKHENPKMQTMAVSVTSILALQLSPEQTAQLEELFMAVK|daddaddmnvfpspqtgsqvgeasmktetnlkpkhrplaillyahqspacgneiitiplcpassvt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14427 VPS13D::IFFO2 ENSG00000048707.15::ENSG00000169991.11 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1414 FALSE NA FALSE NA VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12258103:+ chr1:12290087-12572099:+ chr1:12318160:+ IFFO2 ENSG00000169991.11 protein_coding - - chr1:18904280-18956676:- chr1:18912083:- chr1:19230774-19283170:- chr1:19238577:- chr1:12259953,chr1:12259953 chr1:18912310,chr1:18912359 NA NA chr1:12320010,chr1:12320010 chr1:19238804,chr1:19238853 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none N-terminal_region_of_Chorein_or_VPS13(100%),Vacuolar_sorting-associated_protein_13__N-terminal(100%)|Intermediate_filament_protein(100%) Chorein_N(100%),VPS13(100%)|Filament(100%) 13 14 7 105 190 ENST00000620676.6 ENST00000455833.7 downstream downstream mismatches(7) CTTTGAATGCTAACTTGTATGAGATCAGAGAGCAGAGGAAACGTTGCACCTGGGACTTTATGTTGCACCGCGCTCGTGATGCTGTATCTTACACTGACAAATATTTCAACAAGTTAAAAGGAGGCCTGCTGTCCACAGATGACAAG|GCGGGAGACCTTTGACTTTGACGACGACTGTcACAGCCTGACGTGGGAAGAGAATGAAGACACGCTGCTGCTCTGGGAGGATTTCACCAACTGCAATCCGACCATCGACCTGCAGGGCGAG___CAAGAGGAAAACTTGGGCAACTTGATCCATGAGACCGAATCCTTCTTCAAcACGAGAGACAAGGA LNANLYEIREQRKRCTWDFMLHRARDAVSYTDKYFNKLKGGLLSTDDK|agdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14433 SIRT3::CD151 ENSG00000142082.15::ENSG00000177697.19 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIRT3 ENSG00000142082.15 protein_coding - - chr11:215030-236931:- chr11:224078:- chr11:215030-236931:- chr11:224078:- CD151 ENSG00000177697.19 protein_coding + + chr11:832887-839831:+ chr11:834530:+ chr11:832887-839831:+ chr11:834530:+ chr11:219501,chr11:219506 chr11:834479,chr11:834474 NA NA chr11:219501,chr11:219506 chr11:834479,chr11:834474 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site inversion high none Sir2_family(98%)|Tetraspanin_family(100%) SIR2(70%)|Tetraspanin(100%) 8 13 7 37 2171 ENST00000382743.9 ENST00000322008.9 upstream upstream mismatches(2) GCCTCTGCCACCTGCACAGTCTGCCAAAGACCCTTCCCAGGGGAGGACATTCGG___GCTGACGTGATGGCAGACAGGGTTCCCCGCTGCCCGGTCTGCACCGGCGTTGTGAAGCCCGACATTGTGTTCTTTGGGGAGCCGCTGCCCCAGAGGTTCTTGCTGCATGTGGTTGATTTCCCCATGGCAGATCTGCTGCTCATCCTTGGGACCTCCCTGGAG|CCTAGAGTCCTGGGGAGCTTCTGTCCACCTGTCCTGCAGAGGAGTCGTTTCCAGCCCGGCTG___CCCCAGGATGGGTGAGTTCAACGAGAAGAAGACAACATGTGGCACCGTTTGCCTCAAGTACCTGCTGTTTACCTACAATTGCTGCTTCTGG___CTGGC ASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLE|prvlgsfcppvlqrsrfqpgcprMGEFNEKKTTCGTVCLKYLLFTYNCCFWL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14434 CDK5RAP2::MEGF9 ENSG00000136861.19::ENSG00000106780.9 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1417 FALSE NA FALSE NA CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120545714:- chr9:123151153-123342448:- chr9:123307992:- MEGF9 ENSG00000106780.9 protein_coding - - chr9:120600811-120714470:- chr9:120622755:- chr9:123363089-123476748:- chr9:123385033:- chr9:120542483 chr9:120652775 NA NA chr9:123304761 chr9:123415053 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Centrosomin_N-terminal_motif_1(96%)|Laminin_EGF_domain(74%) Cnn_1N(77%)|Laminin_EGF(28%) 12 10 6 557 341 ENST00000349780.9 ENST00000373930.4 upstream downstream duplicates(1),mismatches(10) GGACTTTGAAAAT___CAAATCACTGAATTGAAGAAAGAAAACTTTAACCTAAAGCTCCGCATCTATTTCCTTGAGGAAAGAATGCAACAGGAATTTCATGGCCCCACTGAACATATCTACAAAACT___AACATTGAGCTCAAGGTGGAAGTAGAAAGTCTGAAGCGGGAACTCCAGGAGAGAGAGCAGCTGCTCATCAAAGCCTC|TTCTGGGAAATGCCAGTGCAAAGTGGGTGTCATTGGCTCTATATGTGACCGATGCCAAGATGGATATTATGGCTTTAGTAAGAATGGCTGCTT?CCCTGCCAATGCAATAATCGGTCTGCCAGTTGCGATGCCCTCACAG___GTGCTTGTTTAAACTGCCAGGAAAATAGCAAAGGAAATCACTGTGAAG DFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQEREQLLIKAs|SGKCQCKVGVIGSICDRCQDGYYGFSKNGC?PCQCNNRSASCDALTGACLNCQENSKGNHCE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 123330599 FALSE 123367919 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14435 BMPR1B::EPM2A ENSG00000138696.11::ENSG00000112425.16 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BMPR1B ENSG00000138696.11 protein_coding + + chr4:94757955-95158448:+ chr4:94875900:+ chr4:95679106-96079599:+ chr4:95797051:+ EPM2A ENSG00000112425.16 protein_coding - + chr6:145382535-145736023:- chr6:145715813:+ chr6:145703671-146057159:- chr6:146036949:+ chr4:94891243,chr4:94891243,chr4:94890949,chr4:94890947 chr6:145648477,chr6:145648430,chr6:145648505,chr6:145648503 NA NA chr4:95812394,chr4:95812394,chr4:95812100,chr4:95812098 chr6:145969613,chr6:145969566,chr6:145969641,chr6:145969639 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 2 18 6 143 29 ENST00000515059.6 unknown downstream upstream duplicates(4),mismappers(6),mismatches(2) GAGACCGCGGCGCTGAGGACGCGGGAGCCGGGAGCGCAGCCGCGG___GGTGGAGTTCAGCCTACTCTTTCTTAGATGTGAAAGGAAAGGAAGATCATTTCATGCCTTGTTGATAAAG|ATGGGACCATCTAATTGCAGGAAAACAAGCTCAGGACTCCCACTGATTCTACATTATG___CTAAGAAGGCCTACAAGCAACAATATCCCAGAAGGAAGAGGCACACTCACTGCCCAGATCTTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bone morphogenetic protein receptor type-1B TKL STKR STKR1 O00238 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14438 C1orf159::OPRD1 ENSG00000131591.18::ENSG00000116329.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C1orf159 ENSG00000131591.18 protein_coding - - chr1:1081818-1116361:- chr1:1090353:- chr1:1017198-1051741:- chr1:1025733:- OPRD1 ENSG00000116329.12 protein_coding + + chr1:28812170-28871267:+ chr1:28858954:+ chr1:29138682-29197779:+ chr1:29185466:+ chr1:1089678 chr1:28812555 NA NA chr1:1025058 chr1:29139067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4501)(14%)|7_transmembrane_receptor_(rhodopsin_family)(95%) DUF4501(13%)|7TM_GPCR_Srsx(8%),7TM_GPCR_Srv(100%),7TM_GPCR_Srx(7%),7tm_1(8%) 7 8 7 192 21 ENST00000379325.7 ENST00000234961.7 upstream upstream mismatches(5) TTCTCGTGGGAGTCGCCAGCAAGTCCATGGAGAACACG___GCCCAGCTGCCCGAGTGCTGTGTGGATGTGGTGGGCGTCAACGCCAGCTGCCCAGGCGCAAGTCTGTGTGGTCCAG|GTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCGCTACATCGCTGTCTGCCACCCTGTCAAGGCCCTGGACTTCCGCACGCCTGCCAAGGCCAAGCTGATCAACATCTGTATCTG LVGVASKSMENTAQLPECCVDVVGVNASCPGASLCGP|gtlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14441 KAZN::ENSG00000233290 ENSG00000189337.17::ENSG00000233290.4 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:14960875:+ chr1:14219287-15444539:+ chr1:15287371:+ ENSG00000233290 ENSG00000233290.4 lncRNA - - chr1:82212413-82848205:- chr1:82486273:- chr1:82678097-83313888:- chr1:82951956:- chr1:14978322,chr1:14978321 chr1:82492983,chr1:82492984 NA NA chr1:15304818,chr1:15304817 chr1:82958666,chr1:82958667 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 7 7 4 95 21 ENST00000361144.9 ENST00000702694.1 downstream downstream duplicates(1),mismatches(2) GCGGATGGCGACTGCAGCCAGCCCG___TGCTCCTGCGGGAAGAAGTGTCGCGGCTCCAGGAGGAAGTTCACCTTCTCCGGCAGATGAAGGAGATGTTGGCGAAGGACCTGGAGGAGTCGCAGGGCGGCAAGTCCTCTGAGGTCCTCTCGGCCACCGAGCTCAGGGTCCAGCTGGCCCAGAAGGAGCAGGAGCTAGCCAGAGCCAAAGAAGCCTTGCAGG|GACCAACAGCATTAAGTGCTACAAAGAGAGACCCTGCTGAGGGGGCCCCTCCTCTCCTCCCCAAGATCCTGCCAGGAAGGGACTGCCTTTTGTCACAATTTGGCTGACTGGTGAGTGACACCGAAATGCTCCATCTTGCTCAGACTGAAGGACAGTGGCAC ADGDCSQPVLLREEVSRLQEEVHLLRQMKEMLAKDLEESQGGKSSEVLSATELRVQLAQKEQELARAKEALQ|gptalsatkrdpaegappllpkilpgrdcllsqfg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14443 PDE8A::SLC28A1 ENSG00000073417.15::ENSG00000156222.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1419 TRUE 2540 TRUE 978 PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:85076787:+ chr15:85523671-85682376:+ chr15:85620018:+ SLC28A1 ENSG00000156222.12 protein_coding + + chr15:84884654-84945798:+ chr15:84918524:+ chr15:85427885-85489029:+ chr15:85461755:+ chr15:85082936 chr15:84908899 NA NA chr15:85626167 chr15:85452130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Na+_dependent_nucleoside_transporter_C-terminus(100%),Nucleoside_recognition(98%) |Gate(36%),Nucleos_tra2_C(100%) 13 1 2 105 15 ENST00000310298.8 ENST00000394573.6 downstream upstream duplicates(1) GGGCATGTGAAAAAGCAGGGTTTAAGTGTACAGTTACCAAGGAGGCTCAGGCTGTCCTTGCCTGTTTCCTGGACAAACATCATGACATTATCATCATAGACCACAGAAATCCTCGACAGCTGGATGCAGAGGCACTGTGCAG___GTCTATCAGATCATCAAAACTCTCAGAAAACACAGTTATTGTTGGTGTAGTACGCAG___GGTGGATAGAGAAGAGTTGTCCGTAATGCCTTTCATTTCTGCTGGATTTACAAGG|GTTCTGCCCATCATTGTCTTTTTCAGCTGTGTCATATCCGTTCTCTACCACGTGGGCCTCATGCAGT ACEKAGFKCTVTKEAQAVLACFLDKHHDIIIIDHRNPRQLDAEALCRSIRSSKLSENTVIVGVVRRVDREELSVMPFISAGFTR|VLPIIVFFSCVISVLYHVGLMQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14444 PDE8A::SLC28A1 ENSG00000073417.15::ENSG00000156222.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2540 TRUE 978 PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:85076787:+ chr15:85523671-85682376:+ chr15:85620018:+ SLC28A1 ENSG00000156222.12 protein_coding + + chr15:84884654-84945798:+ chr15:84920989:+ chr15:85427885-85489029:+ chr15:85464220:+ chr15:85082936 chr15:84908899 NA NA chr15:85626167 chr15:85452130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Na+_dependent_nucleoside_transporter_C-terminus(100%),Nucleoside_recognition(78%) |Gate(20%),Nucleos_tra2_C(100%) 0 1 1 105 28 ENST00000310298.8 ENST00000394573.6 downstream upstream none CGCAG___GGTGGATAGAGAAGAGTTGTCCGTAATGCCTTTCATTTCTGCTGGATTTACAAGG|ATTGCCTGGCTGATGCAAGTCACCATGGGCACCACAGCCAC...CTTTGTGAGCCAG___ACCGAGGCTCCATTACTGATCCGGCCCTACTTGGCAGACATGACACTCTCTGAAGTCCACGTTGTCATGACCGGAGGTTACGCCACCATTGCTGGCAGCCTGCTGGGTGCCTACATCTCCT RRVDREELSVMPFISAGFTR|IAWLMQVTMGTTA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14445 PDE8A::SLC28A1 ENSG00000073417.15::ENSG00000156222.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 2540 TRUE 978 PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:85067204:+ chr15:85523671-85682376:+ chr15:85610435:+ SLC28A1 ENSG00000156222.12 protein_coding + + chr15:84884654-84945798:+ chr15:84918524:+ chr15:85427885-85489029:+ chr15:85461755:+ chr15:85082936 chr15:84908899 NA NA chr15:85626167 chr15:85452130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Na+_dependent_nucleoside_transporter_C-terminus(100%),Nucleoside_recognition(98%) |Gate(36%),Nucleos_tra2_C(100%) 1 0 1 101 15 ENST00000310298.8 ENST00000394573.6 downstream upstream none AGGGCATGTGAAAAAGCAGGGTTTAAGTGTACAGTTACCAAGGAGGCTCAGGCTGTCCTTGCCTGTTTCCTGGACAAACATCATGACATTATCATCATAGACCACAGAAATCCTCGACAGCTGGATGCAGAGGCACTGTGCAG|GTTCTGCCCATCATTGTCTTTTTCAGCTGTGTCATATCCGTTCTCTAC RACEKAGFKCTVTKEAQAVLACFLDKHHDIIIIDHRNPRQLDAEALCr|fcpslsfsavsypfs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14450 NCS1::GPR107 ENSG00000107130.10::ENSG00000148358.21 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE TRUE 1422 FALSE NA FALSE NA NCS1 ENSG00000107130.10 protein_coding + + chr9:130172404-130237303:+ chr9:130172727:+ chr9:132934683-132999582:+ chr9:132935006:+ GPR107 ENSG00000148358.21 protein_coding + + chr9:130053426-130140169:+ chr9:130075636:+ chr9:132815705-132902448:+ chr9:132837915:+ chr9:130174258,chr9:130174258 chr9:130060201,chr9:130059877 NA NA chr9:132936537,chr9:132936537 chr9:132822480,chr9:132822156 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Lung_seven_transmembrane_receptor(100%) |GpcrRhopsn4(100%),Lung_7-TM_R(100%) 1 11 1 333 333 ENST00000372398.6 ENST00000372406.5 downstream upstream duplicates(2),low_entropy(1),mismatches(2) CGGCCCGGGGGGGCGGGGGCCGCGGCCGCCGAGGATGGGGAAATCCAACAGCAAGTTGAAGCCCGAAGTTGTGGAGGAGCTGACCAGGAAGACCTACT|GATGATGTGAGGCATAAAGTTCATCTGAACACCTTTGGCTTCTTCAAGGATGGGTACATGGTGGTGAATGTCAGTAGCCTCTCACTGAATGAGCCTGAAGACAAGGATGTGACT___ATTGGATTTAGCCTAGACCGT MGKSNSKLKPEVVEELTRKTY|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Adrenocortical carcinoma ADRENAL_GLAND no_match 132935006 TRUE 132889762 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14464 SLC9A2::IL1RL2 ENSG00000115616.3::ENSG00000115598.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC9A2 ENSG00000115616.3 protein_coding + + chr2:102619553-102711355:+ chr2:102665350:+ chr2:103236012-103327814:+ chr2:103281809:+ IL1RL2 ENSG00000115598.10 protein_coding + + chr2:102187006-102240002:+ chr2:102225898:+ chr2:102803466-102856462:+ chr2:102842358:+ chr2:102670390 chr2:102224923 NA NA chr2:103286849 chr2:102841383 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Sodium/hydrogen_exchanger_family(62%)|TIR_domain(100%) Na_H_Exchanger(60%)|TIR(100%) 3 2 3 89 10 ENST00000233969.3 ENST00000264257.7 downstream upstream mismatches(6) GTCCTGTACAACTTGTTCAAGTCGTTTTGCCAGATGAAAACCATTGAGACCATTGATGTGTTTGCAGGAATCGCCAACTTCTTTGTTGTGGGAATCG___...TCCGAGTGATCGAGCCACTGTTTGTTTTCCTGTACAGTTATTTGTCCTACATCACAGCTGAAATGTTTCACCTCTCAGGCATCATGGC|CTCCGGATTTTCGAGCTTACTTGATAGGAGGGCTTATCGCCTTGGTGGCTGTGGCTGTGTCTGTTGTGTACATATACAACATTTTTAAGATCGACATTGTTCTTTGGTAcCGAAGTGCCTTCCATTCTACAGAGACCATAGTAG___ATGGGAAGCTGTATGACGCCTATGTCTTATACCCCAAGCCCCACAAGGAAAGCCAGAGGCATGCCGTGG RVIEPLFVFLYSYLSYITAEMFHLSGIMa|sgfsslldrrayrlggcgcvccvhiqhf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14465 ZNF704::CSMD3 ENSG00000164684.13::ENSG00000164796.18 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821374:- chr8:81540686-81787016:- chr8:81733609:- CSMD3 ENSG00000164796.18 protein_coding - + chr8:112222928-113436939:- chr8:112609719:+ chr8:113235157-114449168:- chr8:113621948:+ chr8:80732016,chr8:80732019 chr8:112582240,chr8:112582237 NA NA chr8:81644251,chr8:81644254 chr8:113594469,chr8:113594466 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 3 3 2 534 6 ENST00000327835.7 unknown upstream upstream duplicates(2) GGAAGATGTGAAAACAGCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAG|TAGTGTTCACAGTTGCCAAGATATAGAAACAACCAACCTAAGTGTCTATTGATGGATGAATGGGAAAGAAAATGTAATATATATATATGGAATATTATTCAATATGGAATATTATTTAGCACTTAAAGAGAAGAAAATCCTGACTTTGCAACAACATGGATGAACCTGCAAGACATTATGGTAAGTGAAATAAGCCAGACACACAAAGACAAATGCTCC...TGTAGACCACATGGTAAGGAACTGTGGATGGAATTGAGCAAAGAATTGAAGCTTTCAGTTCCACAACACAAGAAACTGATTGCTTCCAATATAACCATGTG EDVKTADTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPAs|svhscqdiettnlsvy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14472 METTL16::TET1 ENSG00000127804.13::ENSG00000138336.9 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA METTL16 ENSG00000127804.13 protein_coding - - chr17:2405562-2511891:- chr17:2414395:- chr17:2308856-2415185:- chr17:2317689:- TET1 ENSG00000138336.9 protein_coding + + chr10:68560337-68694487:+ chr10:68572217:+ chr10:70320094-70454244:+ chr10:70331974:+ chr17:2412565,chr17:2412581,chr17:2412522,chr17:2412603 chr10:68571742,chr10:68571725,chr10:68571756,chr10:68571317 NA NA chr17:2315859,chr17:2315875,chr17:2315816,chr17:2315897 chr10:70331499,chr10:70331482,chr10:70331513,chr10:70331074 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation high none RNA_methyltransferase(100%)|CXXC_zinc_finger_domain(100%),Oxygenase_domain_of_the_2OGFeDO_superfamily_(100%) MTS(100%),Methyltransf_10(100%)|Tet_JBP(100%),zf-CXXC(100%) 1 3 0 7 12 ENST00000571332.5 ENST00000373644.5 upstream upstream mismatches(1) GAAAA___GGGAGCAAGAGGCAGGAAAGAGCACAGACTTCGACGTTCAGACCTGGGTTCCCGTCCAGTTCCATTCCTTGCACAGG|ACCAAAACCTTGTGTGACTGAGCTGAAGAGCAGTGCATCCAGATTCTCCTCAGAAGTGAGACTTTCCAAAGGACCAATGACTCTGTTTCCTG?GCCCTTTCATTTTTTCCTACTCTGTAGCTATGTCTCGATCCCGCCATGCAAGGCCTTCCAGATTAGTCAGGAAGGAAGATGTAAACAAAAAAAA...ATGTTAAGAAAAAAACAGAACCTAAACCACCCGTGCCAGTCAGAAGCCTTCTGACAAGAGCTGGAGCAGCACGCATGAATTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tet methylcytosine dioxygenase 1 1 Yes AML leukaemia_lymphoma oncogene, TSG, fusion translocation 14491 TLN2::ENSG00000259370 ENSG00000171914.17::ENSG00000259370.2 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TLN2 ENSG00000171914.17 protein_coding + + chr15:62390526-62844631:+ chr15:62453587:+ chr15:62682725-63136830:+ chr15:62745786:+ ENSG00000259370 ENSG00000259370.2 lncRNA - + chr15:62827675-62884034:- chr15:62882338:+ chr15:63119874-63176233:- chr15:63174537:+ chr15:62506300,chr15:62506301 chr15:62882151,chr15:62882151 NA NA chr15:62798499,chr15:62798500 chr15:63174350,chr15:63174350 NA NA sense antisense unknown intron intron deletion/5'-5' medium none none none 3 0 2 47 11 ENST00000636159.2 unknown downstream upstream none CTCCCGGGCAGGCGCTCTGCAATGAGACAGTAAATGCATCCCCCG___GTGCTGGGCTACCTGACTGCTAGCAGGGACTGAGGGAGGGCATTTCTTGAAGAGTTACCCAGATCCAGCTGCTTATCTGCCCCTGGCCATGGTTTATGTTGTTGACTGATTGCACCAGCTGCTGAGAGGTGGTTTTATGTAGT|ATAAATCCTCAGGGGCCCACTGACCTGGATTTGAAACCACTGGTCTGATTTTCTGAACGCAGTTCACTTAACTTTGTGGTTGACCTCAGGACCAATCGTCACTCACTTTCCACTCCTGCCTTTGGATCAAGCCCATCTACACAGAAAACAAG___AGTCATTGACCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14541 ARHGAP27P1-BPTFP1-KPNA2P3::KPNA2 ENSG00000215769.8::ENSG00000182481.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ARHGAP27P1-BPTFP1-KPNA2P3 ENSG00000215769.8 lncRNA - - chr17:64749663-64781707:- chr17:64754005:- chr17:62745781-62777825:- chr17:62750123:- KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68045772:+ chr17:66031752-66043480:+ chr17:66041888:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Atypical_Arm_repeat_(100%) |Arm_3(100%) 0 0 0 419 6058 ENST00000578492.5 ENST00000676857.1 upstream upstream inconsistently_clipped(1) TGGgTATCCTGGgTGCCATTTCAAATATCTTTgAG|GCTGCTGAGAAACTAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGCTTAGACAAAAgTGAAGCTCTACAAAACCgTGAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14542 KPNA2P3::KPNA2 ENSG00000266820.1::ENSG00000182481.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KPNA2P3 ENSG00000266820.1 transcribed_unprocessed_pseudogene - - chr17:64749918-64758603:- chr17:64754005:- chr17:62746036-62754721:- chr17:62750123:- KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68045772:+ chr17:66031752-66043480:+ chr17:66041888:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Atypical_Arm_repeat_(100%) |Arm_3(100%) 0 0 0 419 6058 ENST00000584190.1 ENST00000676857.1 upstream upstream inconsistently_clipped(1) TGGgTATCCTGGgTGCCATTTCAAATATCTTTgAG|GCTGCTGAGAAACTAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGCTTAGACAAAAgTGAAGCTCTACAAAACCgTGAAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14544 CTNND1::SMTNL1 ENSG00000198561.16::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1424 TRUE 2554 TRUE 979 CTNND1 ENSG00000198561.16 protein_coding + + chr11:57753243-57819546:+ chr11:57762046:+ chr11:57520715-57587018:+ chr11:57529518:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Calponin_homology_(CH)_domain(33%) |CH(2%) 126 75 121 1928 263 ENST00000358694.10 ENST00000527972.6 downstream upstream duplicates(38),inconsistently_clipped(2),low_entropy(5),mismatches(12) CCATTTTAGGTGTTGGATCTGAGGGGGAAAAAAAAGAGAGAGGGAGAGAGAGAGAAAGAAGAGCAGGAAAGATCCCGAAAGGAGGAAGAGGTGGCGAAAAATCAACTGCCCTGCTGGATTTGTCTTTCTCAGCACCTTGGCGAAGCCTTGGGTTTCTTTCTTAAAGGACTGATTTTTAGAACTCCACATTTGAG|GAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAGACCAAGAAGAAGTGAGGAGGTGACTGGCTCTGTGGGCAGAGATGGGCAGGGTGCCCAGCTCAGCAGCCACGGCCCGGGGGTTCCCTTCTGCTCCATGGAGGCACCAGAGCCAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin delta 1 2 large intestine carcinoma epithelial nonsense FALSE NA NA NA NA NA NA NA NA NA 14545 CTNND1::SMTNL1 ENSG00000198561.16::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2554 TRUE 979 CTNND1 ENSG00000198561.16 protein_coding + + chr11:57753243-57819546:+ chr11:57762119:+ chr11:57520715-57587018:+ chr11:57529591:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Calponin_homology_(CH)_domain(33%) |CH(2%) 1 8 124 245 263 ENST00000399050.10 ENST00000527972.6 downstream upstream duplicates(18),inconsistently_clipped(1),mismatches(11) CCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGGAAAAAAAAGAGAGAGGGAGAGAGAGAGAAAGAAGAGCAGGAAAGATCCCGAAAGGAGGAAGAGGTGGCGAAAAATCAACTGCCCTGCTGGATTTGTCTTTCTCAGCACCTTGGCGAAGCCTTGGGTTTCTTTCTTAAAGGACTGATTTTTAGAACTCCACATTTGAGGTGTGTGGCTTTTGAAGAAAATGTATGTACTGACGGGAAAAGGAGGATAAGCAAGTCGAATTTTTGTCTTACG|GAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAGACCAAGAAGAAGTGAGGAGGTGACTGGCTCTGTGGGCAGAGATGGGCAGGGTGCCCAGCTCAGCAGCCACGGCCCGGGGGTTCCCTTCTGCTCCATGGAGGCACCAGAGCCAGGGGCTTAGGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin delta 1 2 large intestine carcinoma epithelial nonsense FALSE NA NA NA NA NA NA NA NA NA 14546 CTNND1::SMTNL1 ENSG00000198561.16::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2554 TRUE 979 CTNND1 ENSG00000198561.16 protein_coding + + chr11:57753243-57819546:+ chr11:57762068:+ chr11:57520715-57587018:+ chr11:57529540:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Calponin_homology_(CH)_domain(33%) |CH(2%) 1 1 124 317 263 ENST00000532463.5 ENST00000527972.6 downstream upstream duplicates(18),mismatches(11) CCTTTGGCTGGGTGCAACTTCCATTTTAGGTGTTGGATCTGAGGGGGAAAAAAAAGAGAGAGGGAGAGAGAGAGAAAGAAGAGCAGGAAAGATCCCGAAAGGAGGAAGAGGTGGCGAAAAATCAACTGCCCTGCTGGATTTGTCTTTCTCAGCACCTTGGCGAAGCCTTGGGTTTCTTTCTTAAAGGACTGATTTTTAGAACTCCACATTTGAGGTGTGTGGCTTTTGAAGAAAAT|GAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAGACCAAGAAGAAGTGAGGAGGTGACTGGCTCTGTGGGCAGAGATGGGCAGGGTGCCCAGCTCAGCAGCCACGGCCCGGGGGTTCCCTTCTGCTCCATGGAGGCACCAGAGCCAGGGGCTTAGGCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin delta 1 2 large intestine carcinoma epithelial nonsense FALSE NA NA NA NA NA NA NA NA NA 14547 CTNND1::SMTNL1 ENSG00000198561.16::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2554 TRUE 979 CTNND1 ENSG00000198561.16 protein_coding + + chr11:57753243-57819546:+ chr11:57762667:+ chr11:57520715-57587018:+ chr11:57530139:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Calponin_homology_(CH)_domain(33%) |CH(2%) 0 1 124 13 263 ENST00000673826.1 ENST00000527972.6 downstream upstream duplicates(18),mismatches(11) TGGGTGGATCCCTCTTACTTTTCCAG|GAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAGACCAAGAAGAAGTGAGGAGGTGACTGGCTCTGTGGGCAGAGATGGGCAGGGTGCCCAGCTCAGCAGCCACGGCCCGGGGGTTCCCTTCTGCTCCATGGAGGCACCAGAGCCAGGGGCTTAGGCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin delta 1 2 large intestine carcinoma epithelial nonsense FALSE NA NA NA NA NA NA NA NA NA 14548 MIA2::GEMIN2 ENSG00000150527.18::ENSG00000092208.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1425 TRUE 2555 TRUE 980 MIA2 ENSG00000150527.18 protein_coding + + chr14:39230231-39388513:+ chr14:39327022:+ chr14:39699435-39857717:+ chr14:39796226:+ GEMIN2 ENSG00000092208.19 protein_coding + + chr14:39114285-39136973:+ chr14:39136440:+ chr14:39583489-39606177:+ chr14:39605644:+ chr14:39342798,chr14:39342798 chr14:39133638,chr14:39133636 NA NA chr14:39812002,chr14:39812002 chr14:39602842,chr14:39602840 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Variant_SH3_domain(100%)|Survival_motor_neuron_(SMN)_interacting_protein_1_(SIP1)(2%) SH3_2(100%)|SIP1(0%) 65 79 69 411 415 ENST00000341502.9 ENST00000308317.12 downstream upstream duplicates(11),inconsistently_clipped(3),mismatches(21) ACTTTGTTGGAGGGTCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAG___GCTCACGAGGCCCAGGGAATCCTCTGGACCATCAGATTACCAATGAAAGAGGAGAATCAAGCTGTGATAGGTTAACCGATCCTCATAGGGCTCCCTCTGACACTGGGTCTCTGTCACCTCCATGGGACCAGGACCGTAGGATGATGTTTCCTCCGCCAG|GTATTTTGACCAACGTGATTTAGCTGATGAGCCATCTTGATGTAGCTGATCTCTCAGGGATAGAAGATATTTCTCATGAAGGCAGCCTAACTCTGAGGAAAACAATGCCAATTCAAGTACAGATTTCAACACATCTTCAACACTATGTGAAGGGTTCACATCTTAACCTGTGCAATTCAGATTGATACTCAGAATATGGGTTGATTTGAATATCTGAAATATCAATGGAAAATCCCA TLLEGPLRLSPLLPGGGGRGSRGPGNPLDHQITNERGESSCDRLTDPHRAPSDTGSLSPPWDQDRRMMFPPP|giltnvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14549 MIA2::GEMIN2 ENSG00000150527.18::ENSG00000092208.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2555 TRUE 980 MIA2 ENSG00000150527.18 protein_coding + + chr14:39230231-39388513:+ chr14:39327022:+ chr14:39699435-39857717:+ chr14:39796226:+ GEMIN2 ENSG00000092208.19 protein_coding + + chr14:39114285-39136973:+ chr14:39135931:+ chr14:39583489-39606177:+ chr14:39605135:+ chr14:39342798,chr14:39342798 chr14:39133638,chr14:39133636 NA NA chr14:39812002,chr14:39812002 chr14:39602842,chr14:39602840 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Variant_SH3_domain(100%)|Survival_motor_neuron_(SMN)_interacting_protein_1_(SIP1)(2%) SH3_2(100%)|SIP1(2%) 0 1 69 411 16 ENST00000341502.9 ENST00000650481.1 downstream upstream duplicates(3),mismatches(2) CACTCGATGTTCCAAATACAGCATTTGGCAGAG___...CTTTTCTCTCTCCTCCAACTTTGTTGGAGGGTCCACTCAGACTCTCACCTTTGCTTCCAGGGGGAGGAGGAAGAG___GCTCACGAGGCCCAGGGAATCCTCTGGACCATCAGATTACCAATGAAAGAGGAGAATCAAGCTGTGATAGGTTAACCGATCCTCATAGGGCTCCCTCTGACACTGGGTCTCTGTCACCTCCATGGGACCAGGACCGTAGGATGATGTTTCCTCCGCCAG|TATAAGTAGGCCGCATGTGGTGGCTCAAGCCTGTAATTCCAGCACTTCGAGAGACTGAGGCTGGAGAATTGTTTGAGCCCAGGAGTTCAAGACCAGTCTGGGAAATG FLSPPTLLEGPLRLSPLLPGGGGRGSRGPGNPLDHQITNERGESSCDRLTDPHRAPSDTGSLSPPWDQDRRMMFPPP|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14550 MIA2::GEMIN2 ENSG00000150527.18::ENSG00000092208.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2555 TRUE 980 MIA2 ENSG00000150527.18 protein_coding + + chr14:39230231-39388513:+ chr14:39304381:+ chr14:39699435-39857717:+ chr14:39773585:+ GEMIN2 ENSG00000092208.19 protein_coding + + chr14:39114285-39136973:+ chr14:39136440:+ chr14:39583489-39606177:+ chr14:39605644:+ chr14:39342798,chr14:39342798 chr14:39133638,chr14:39133636 NA NA chr14:39812002,chr14:39812002 chr14:39602842,chr14:39602840 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Variant_SH3_domain(100%)|Survival_motor_neuron_(SMN)_interacting_protein_1_(SIP1)(2%) SH3_2(100%)|SIP1(0%) 1 1 0 415 415 ENST00000341502.9 ENST00000308317.12 downstream upstream none CTGATTCATGCTGCTAAG___TTAAATGCTTCTTTAAAAACCTTAGAAGGAGAAAGAAACCAAATTTATATTCAGTTGTCTGAAGTTGATAAAACAAAGGAAGAGCTTACAG|GTATTTTGACCAACGTGATTTAGCTGATGAGCCATCTTGATGTAGCTGATCTCTCAGGGATAGAAGATATTTCTCATGAAGGCAG...GTTCACATCTTAACCTGTGCAATTCAGATTGATACTCAGAATATGGGTTGATTTGAATATCTGAAATATCAATGGAAAATCCCACTCAGTTTTTGATGAAC LIHAAKLNASLKTLEGERNQIYIQLSEVDKTKEELT|giltnvi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14551 PUM1::TRERF1 ENSG00000134644.16::ENSG00000124496.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2556 TRUE 981 PUM1 ENSG00000134644.16 protein_coding - - chr1:30931506-31065991:- chr1:30941151:- chr1:31404353-31538838:- chr1:31413998:- TRERF1 ENSG00000124496.13 protein_coding - - chr6:42224931-42452051:- chr6:42269848:- chr6:42192669-42419789:- chr6:42237586:- chr1:30937541,chr1:30938030,chr1:30938032 chr6:42280516,chr6:42280516,chr6:42280515 NA NA chr1:31410388,chr1:31410877,chr1:31410879 chr6:42248254,chr6:42248254,chr6:42248253 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Pumilio-family_RNA_binding_repeat(79%)|C2H2-type_zinc_finger(100%),ELM2_domain(100%) PUF(85%)|ELM2(100%),zf-C2H2_6(100%) 40 72 57 721 164 ENST00000426105.7 ENST00000541110.5 upstream downstream duplicates(11),mismatches(12),multimappers(1) AGAGAATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTTAGAGGAGCTTCACCAGCACACAGAGCAGCTTGTACAG___GATCAATATGGAAATTATGTAATCCAACATGTACTGGAGCACGGTCGTCCTGAGGATAAAAGCAAAATTGTAGCAGAAATCCGAGGCAATGTACTTGTATTGAGTCAGCACAAATTTGCAAG|GTGTGAGCGACGTCTCCTCACCACAGTGCTGTGTGGTCTATACCTCAGCCAGGGAGAGGATGTGAAACCCCCCGCCCTGCACATGAGTGGTACAGGCCAACAGGAACACCTGGCTCCAGCCACGTTCACAGACATGTCAGCCGTGGAGTAGTGCTGACACTTTTCTCTCAGCTTCTCAGGGTTTCAGTCCTTTTGGGTTTGTTTTATTTACCTTTTTTATGGTTTTGTGGCTGGACGTTCACAACCAAGGCAGA RILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAr|cerrllttvlcglylsqgedvkppalhmsgtgqqehlapatftdmsave* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14552 PUM1::TRERF1 ENSG00000134644.16::ENSG00000124496.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2556 TRUE 981 PUM1 ENSG00000134644.16 protein_coding - - chr1:30931506-31065991:- chr1:30941151:- chr1:31404353-31538838:- chr1:31413998:- TRERF1 ENSG00000124496.13 protein_coding - - chr6:42224931-42452051:- chr6:42265797:- chr6:42192669-42419789:- chr6:42233535:- chr1:30937541,chr1:30938030,chr1:30938032 chr6:42280516,chr6:42280516,chr6:42280515 NA NA chr1:31410388,chr1:31410877,chr1:31410879 chr6:42248254,chr6:42248254,chr6:42248253 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Pumilio-family_RNA_binding_repeat(79%)|C2H2-type_zinc_finger(100%),ELM2_domain(100%) PUF(85%)|ELM2(100%),zf-C2H2_6(100%) 0 1 1 721 398 ENST00000426105.7 ENST00000541110.5 upstream downstream none ATAAAAGCAAAATTGTAGCAGAAATCCGAGGCAATGTACTTGTATTGAGTCAGCACAAATTTGCAAG|ATGCACCTACCTGATGGGAGAGCCCAGCCAGGGTCCCCTGAGTCAAG___TGGCCAACCCAAAGGAGCGTTTGGGGAGCAGTTTGATGCCAAGA KSKIVAEIRGNVLVLSQHKFAr|ctylmgepsqgplsqvanpkerlgsslmp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14553 PUM1::TRERF1 ENSG00000134644.16::ENSG00000124496.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2556 TRUE 981 PUM1 ENSG00000134644.16 protein_coding - - chr1:30931506-31065991:- chr1:31059204:- chr1:31404353-31538838:- chr1:31532051:- TRERF1 ENSG00000124496.13 protein_coding - - chr6:42224931-42452051:- chr6:42259723:- chr6:42192669-42419789:- chr6:42227461:- chr1:30937541,chr1:30938030,chr1:30938032 chr6:42280516,chr6:42280516,chr6:42280515 NA NA chr1:31410388,chr1:31410877,chr1:31410879 chr6:42248254,chr6:42248254,chr6:42248253 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |C2H2-type_zinc_finger(66%),ELM2_domain(100%) |ELM2(100%),zf-C2H2_6(99%) 1 0 1 864 531 ENST00000426105.7 ENST00000541110.5 upstream downstream none CTTGGGGGAGGAGGAAGTGGAGGAGGCGGCTATAATAATAGCAAACATCGATGGCCTACTGGGGATAACATTCATGCAGAACATCAG|GAAATCCCCAGGAAGCATCAGCCGAGTGTGCCCAAAGCCGAG LGGGGSGGGGYNNSKHRWPTGDNIHAEHQ|EIPRKHQPSVPKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14556 KMT2E::LHFPL3 ENSG00000005483.23::ENSG00000187416.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1426 FALSE NA FALSE NA KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105081797:+ chr7:104581390-104755466:+ chr7:104722244:+ LHFPL3 ENSG00000187416.13 protein_coding + + chr7:104328603-104908561:+ chr7:104906187:+ chr7:103969051-104549008:+ chr7:104546634:+ chr7:105089004,chr7:105089003 chr7:104903203,chr7:104903199 NA NA chr7:104729451,chr7:104729450 chr7:104543650,chr7:104543646 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PHD-finger(100%),SET_domain(100%)| PHD(100%),SET(100%)| 43 33 36 214 94 ENST00000311117.8 ENST00000424859.7 downstream upstream duplicates(4),mismappers(2),mismatches(3) GCTCGATTCATCAGGCGGTCTTGTACACCCAATGCAGAG___GTGAGGCATGAAATTCAAGATGGAACCATACATCTTTATATTTATTCTATACACAGTATTCCAAAGGGAACTGAAATTACTATTGCCTTTGATTTTGACTATGGAAATTG|TTCTGCTAAGCCAATATTCTCTAGAATGAGCACAAAACAAATCGAATAACAGCTAAACAAATCGAATAACAGCTAAACGAATCGAATAACAGCTTTTGTACATCAACATCAAGAAGGAATACGCCTGAGAGAGATCAGAGTATATAGATGAATATGAACAAGAATGGAACATTCACTTGTCAACGCACTTTCTAAATCTAGATCAGCAGA ARFIRRSCTPNAEVRHEIQDGTIHLYIYSIHSIPKGTEITIAFDFDYGNc|sakpifsrmstkqie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Skin,Ovary,Stomach,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST exact 105014535 FALSE 104906187 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14557 AGPAT5::MCPH1 ENSG00000155189.12::ENSG00000147316.15 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1427 TRUE 2557 TRUE 982 AGPAT5 ENSG00000155189.12 protein_coding + + chr8:6708642-6761503:+ chr8:6741751:+ chr8:6566163-6619024:+ chr8:6599272:+ MCPH1 ENSG00000147316.15 protein_coding + + chr8:6406592-6648508:+ chr8:6642994:+ chr8:6264113-6506029:+ chr8:6500515:+ chr8:6742184,chr8:6742177 chr8:6635790,chr8:6635780 NA NA chr8:6599705,chr8:6599698 chr8:6493311,chr8:6493301 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Acyltransferase(75%)|BRCT_domain__a_BRCA1_C-terminus_domain(20%) Acyltransferase(73%)|BRCT_2(0%) 22 31 47 365 165 ENST00000285518.11 ENST00000344683.10 downstream upstream duplicates(7),mismatches(40) AGGAATCTATGTAAAGCGCAGTGCCAAATTTAACGAGAAgGAGATGCGAAACAAGTTGCAGAGCTACGTGGACGCAGGAACTCCA___ATGTATCTTGTGATTTTTCCAGAAGGTACAAGGTATAATCCAGAGCAAACAAAAGTCCTTTCAGCTAGTCAGGCATTTGCTGCCCAACGTG|ATTCCATCACCCAGCACAAGGTCTGTGCCtCTGAAAACTACCTATTGTCACAATGACAGTGACCTCACTGGCCTGTGGTGACTGCACACAGCTCGCAAAACTGTCTTTGGATGTTCAAATGAGAAACAAAACTGTGAAGAGAAGGAACTGGCGTATACAAGATGACTTCTGATATCATGTTTGCCATGTGTTGTGGTTCTTAAGAACTCATAGGTGACTTTCTGATGACTGAATGTgTGTTTCAGAGACGCTTCG GIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQR|dSITQHKVCAsENYLLSQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14558 AGPAT5::MCPH1 ENSG00000155189.12::ENSG00000147316.15 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2557 TRUE 982 AGPAT5 ENSG00000155189.12 protein_coding + + chr8:6708642-6761503:+ chr8:6741751:+ chr8:6566163-6619024:+ chr8:6599272:+ MCPH1 ENSG00000147316.15 protein_coding + + chr8:6406592-6648508:+ chr8:6642680:+ chr8:6264113-6506029:+ chr8:6500201:+ chr8:6742184,chr8:6742177 chr8:6635790,chr8:6635780 NA NA chr8:6599705,chr8:6599698 chr8:6493311,chr8:6493301 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none Acyltransferase(75%)|BRCT_domain__a_BRCA1_C-terminus_domain(20%) Acyltransferase(73%)|BRCT_2(1%) 0 2 47 365 11 ENST00000285518.11 ENST00000693231.1 downstream upstream duplicates(3),mismatches(8) GAATCTATGTAAAGCGCAGTGCCAAATTTAACGAGAAgGAGATGCGAAACAAGTTGCAGAGCTACGTGGACGCAGGAACTCCA___ATGTATCTTGTGATTTTTCCAGAAGGTACAAGGTATAATCCAGAGCAAACAAAAGTCCTTTCAGCTAGTCAGGCATTTGCTGCCCAACGTG|ACTGGCAAGCTTCCCACCCTGCCCACTGAGTGTCCTGACACAACGGGAACGTGCCCTGCATCTAATGGGACATGTGGCTACCAAGCACTTGAACTGGCCAGTGTGACTGAGAACTGAATGTTTCATTGTATTGAATTTCGTTTCACGTTAATTTAAAAAG___ATTCCATCACCCAGCACAAGGTCTGTGCCtCTGAAAACTACCTATTGTCACAATGACAGTGACCTCACTGGCCTGTGGTGACTGCACACAGCTCGCAAAACTGTCTTTGGATGTTCAAAT IYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQR|dwqashpah* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14559 AGPAT5::MCPH1 ENSG00000155189.12::ENSG00000147316.15 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2557 TRUE 982 AGPAT5 ENSG00000155189.12 protein_coding + + chr8:6708642-6761503:+ chr8:6732650:+ chr8:6566163-6619024:+ chr8:6590171:+ MCPH1 ENSG00000147316.15 protein_coding + + chr8:6406592-6648508:+ chr8:6642994:+ chr8:6264113-6506029:+ chr8:6500515:+ chr8:6742184,chr8:6742177 chr8:6635790,chr8:6635780 NA NA chr8:6599705,chr8:6599698 chr8:6493311,chr8:6493301 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Acyltransferase(55%)|BRCT_domain__a_BRCA1_C-terminus_domain(20%) Acyltransferase(33%)|BRCT_2(0%) 0 0 0 538 165 ENST00000285518.11 ENST00000344683.10 downstream upstream mismatches(2) AGCAAATCATCAAAGCACAG___TTGACTGGATTGTTGCTGACATCTTGGCCATCAGGCAGAATGCGCTAGGACATGTGCGCTACGTGCTGAAAGAAGGGTTAA...CTTTGCTCAG___CATGGAGGAATCTATGTAAAGCGCAGTGCCAAATTTAACGAGAAgGAGATGCGAAACAAGTTGCAGAGCTACGTGGACGCAGGAACTCCA|ATTCCATCACCCAGCACAAGGTCTGTGCCtCTGAAAACTAC FAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTP|ipspstrsvplkt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14563 POFUT1::TM9SF4 ENSG00000101346.15::ENSG00000101337.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1429 TRUE 2559 TRUE 983 POFUT1 ENSG00000101346.15 protein_coding + + chr20:32207855-32238658:+ chr20:32228455:+ chr20:30795658-30826461:+ chr20:30816258:+ TM9SF4 ENSG00000101337.16 protein_coding + + chr20:32109714-32167258:+ chr20:32142982:+ chr20:30697517-30755061:+ chr20:30730785:+ chr20:32229876,chr20:32229874 chr20:32141968,chr20:32141963 NA NA chr20:30817679,chr20:30817677 chr20:30729771,chr20:30729766 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none GDP-fucose_protein_O-fucosyltransferase(63%)|Endomembrane_protein_70(77%) O-FucT(76%)|EMP70(76%) 21 27 25 373 681 ENST00000375749.8 ENST00000398022.7 downstream upstream duplicates(2),low_entropy(1),mismatches(1) AGAACAATGGAGCCAGAG___ATTTTCTCCAAAGGAACATCCGGTGCTTGCCCTGCCAGGAGCCCCAGCCCAGTTCCCCGTCCTAGAGGAACACAGGCCACTACAGAAGTACATGGTATGGTCAGACGAAATGGTGAAGACGGGAGAGGCCCAGATTCATGCCCACCTTGTCCGGCCCTATGTGGGCATTCATCTGCGCATTGGCTCTGACTGG|ATCTACCTGCACAACCACCTCTCATTCATCCTTTACTATCATCGGGAGGACATGGAAGAGGACCAGGAGCACACGTACCGTGTCGTCCGCTTCGAGGTGATTCCCCAGAGCATCAGGCTGGAGG___ACCTCAAAGCAGATGAGAAGAGTTCGTGCACTCTGCCTGAGGGTACCAACTCCTCGCCCCAAGAAATTGACCCCACCAAGGAGAATCAGC EQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLRIGSDW|IYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKSSCTLPEGTNSSPQEIDPTKENQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14564 POFUT1::TM9SF4 ENSG00000101346.15::ENSG00000101337.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2559 TRUE 983 POFUT1 ENSG00000101346.15 protein_coding + + chr20:32207855-32238658:+ chr20:32216647:+ chr20:30795658-30826461:+ chr20:30804450:+ TM9SF4 ENSG00000101337.16 protein_coding + + chr20:32109714-32167258:+ chr20:32146785:+ chr20:30697517-30755061:+ chr20:30734588:+ chr20:32229876,chr20:32229874 chr20:32141968,chr20:32141963 NA NA chr20:30817679,chr20:30817677 chr20:30729771,chr20:30729766 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication low none GDP-fucose_protein_O-fucosyltransferase(36%)|Endomembrane_protein_70(55%) O-FucT(32%)|EMP70(63%) 2 0 0 360 776 ENST00000706472.1 ENST00000398022.7 downstream upstream mismatches(1) ATCGGGcCATCAGCTTGGAGGATTTCATGGAGAAGCTGGCACCCACCCACTGGCCCCCTGAGAAGCGGGTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGCCCAGATAAGAAGACGTGCCCCATGAAG___GAAGGAAACCCCTTTGGCCCATTCTGGGATCAGTTTCAT|GTATCCTGAGCATGATTATCATTCGGACCCTCCGGAAGGACATTGCCAACTACAACAAGGAGGATGACATT___GAAGACACCATGGAGGAGTCTGGGTGGAAGTTGGTGCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14565 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1430 TRUE 2560 TRUE 984 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27495680:+ chr12:27599669-27655118:+ chr12:27648613:+ chr12:27551612,chr12:27551613 chr12:27487879,chr12:27487877 NA NA chr12:27704545,chr12:27704546 chr12:27640812,chr12:27640810 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |TMCO5_family(37%) |TMCO5(20%) 25 24 23 223 129 ENST00000537927.5 ENST00000535986.2 downstream upstream duplicates(5),mismatches(9) CCCGGATTCCTGACATGGTGTAGTGCAGGCAGGGTGGGGAAAGGACGGGGAAGGACTCGTGTGCTGCGAGCTGGCGGCCGGGCCGGAGTGCTGGGGCTTTGAACTCCGAGAGGAGGTGGACCAGAACTTTTGGAACTAGTGCCGGCGGCTCTCCACCCCCCAG|GACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14566 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1431 TRUE 2560 TRUE 984 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27494300:+ chr12:27599669-27655118:+ chr12:27647233:+ chr12:27551612,chr12:27551613 chr12:27487879,chr12:27487877 NA NA chr12:27704545,chr12:27704546 chr12:27640812,chr12:27640810 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |TMCO5_family(42%) |TMCO5(24%) 7 10 29 223 39 ENST00000537927.5 ENST00000535986.2 downstream upstream mismatches(6) GGTGCCTGCCCGGATTCCTGACATGGTGTAGTGCAGGCAGGGTGGGGAAAGGACGGGGAAGGACTCGTGTGCTGCGAGCTGGCGGCCGGGCCGGAGTGCTGGGGCTTTGAACTCCGAGAGGAGGTGGACCAGAACTTTTGGAACTAGTGCCGGCGGCTCTCCACCCCCCAG|GTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAG___GACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 14574 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1432 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129574336:- chr3:129274057-129325519:- chr3:129293179:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none IPT/TIG_domain(2%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG(0%),TIG_plexin(100%)|Tmemb_cc2(100%) 8 15 23 441 275 ENST00000324093.9 ENST00000393238.8 upstream downstream duplicates(1),low_entropy(2),mismatches(7) CCAGGTGTTCCCGCTCAGCCTCCAACTAAAGGGGCGGCCAGCCCGATTCCTGGACAGCCCTGAGCCCATGACAG___TCATGGTCTATAACTGTGCCATGGGCAGCCCCGACTGTTCCCAGTGCCTGGGCCGCGAAGACCTGGGTCACCTGTGCgTGTGGAGTGATGGCTGCCGCCTGCGGGGGCCTCTGCAGCCCATGGCTGGCACCTGCCCCGCCCCCGAGATCCgCGCG|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAG QVFPLSLQLKGRPARFLDSPEPMTVMVYNCAMGSPDCSQCLGREDLGHLCvWSDGCRLRGPLQPMAGTCPAPEIrA|IERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLAN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14575 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1433 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129573594:- chr3:129274057-129325519:- chr3:129292437:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none IPT/TIG_domain(23%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG(23%),TIG_plexin(100%)|Tmemb_cc2(100%) 8 6 31 388 275 ENST00000324093.9 ENST00000393238.8 upstream downstream mismatches(6) CTGCAGCCCATGGCTGGCACCTGCCCCGCCCCCGAGATCCgCGCG___ATTGAGCCCCTGAGTGGCCCGTTGGACGGTGGGACCCTGCTGACCATCCGAGGAAGGAACCTGGGCCGGCGGCTCAGTGACGTGGCCCACGGCGTGTGGATTGGTGGTGTGGCCTGTGAGCCACTGCCTGACAGATACACGGTGTCGGAGGA|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAA LQPMAGTCPAPEIrAIEPLSGPLDGGTLLTIRGRNLGRRLSDVAHGVWIGGVACEPLPDRYTVSEe|sngwk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14576 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1434 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129578329:- chr3:129274057-129325519:- chr3:129297172:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 11 11 10 350 275 ENST00000324093.9 ENST00000393238.8 upstream downstream duplicates(2),mismatches(2) AGCCCTCAGGACTGCCCCCGGACCCTGCTCTCACCCCTGGCACCCGTGCCTACcGGTGGCTCCCAGAACATCCTGGTGCCTCTGGCCAACACTGCCTTTTTCCAG|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCC SPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQ|IERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKKNQKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14577 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1435 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129575766:- chr3:129274057-129325519:- chr3:129294609:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 6 6 14 407 275 ENST00000324093.9 ENST00000393238.8 upstream downstream mismatches(2) CCGGACCCTGCTCTCACCCCTGGCACCCGTGCCTACcGGTGGCTCCCAGAACATCCTGGTGCCTCTGGCCAACACTGCCTTTTTCCAG___GGTGCAGCCCTGGAGTGTAGTTTTGGGCTGGAGGAGATCTTCGAGGCTGTGTGGGTGAATGAGTCTGTTGTACGCTGTGACCAGGTGGTG|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGC RTLLSPLAPVPTGGSQNILVPLANTAFFQGAALECSFGLEEIFEAVWVNESVVRCDQVV|IERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14578 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129575469:- chr3:129274057-129325519:- chr3:129294312:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)|Predicted_transmembrane_and_coiled-coil_2_protein(100%) PSI(100%),Sema(100%),TIG_plexin(100%)|Tmemb_cc2(100%) 5 0 15 416 275 ENST00000324093.9 ENST00000393238.8 upstream downstream duplicates(1),mismatches(3) CCGTGCCTACcGGTGGCTCCCAGAACATCCTGGTGCCTCTGGCCAACACTGCCTTTTTCCAG___...TGCAGCCCTGGAGTGTAGTTTTGGGCTGGAGGAGATCTTCG?GGCT...GTGAATGAGTCTGTTGTACGCTGTGACCAGGTGGTG___CTGCACACGACCCGGAAGAGCCAGGTGTTCCCGCTCAGCCTCCAACTAAAGGGGCGGCCAGCCCGATTCCTGGACAGCCCTGAGCCCATGACAG|ATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAG VNESVVRCDQVVLHTTRKSQVFPLSLQLKGRPARFLDSPEPMT|drtvgskqpcpniqcsglqyrwqhphrlcgwntrpsahkgchcspaaedpeahrtnqdctnspgrqrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14580 ANKRD40::ANKRD40CL ENSG00000154945.7::ENSG00000167117.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1436 FALSE NA FALSE NA ANKRD40 ENSG00000154945.7 protein_coding - - chr17:50693198-50707914:- chr17:50707521:- chr17:48770559-48785275:- chr17:48784882:- ANKRD40CL ENSG00000167117.10 protein_coding - - chr17:50761029-50767557:- chr17:50761506:- chr17:48838390-48844918:- chr17:48838867:- chr17:50701666,chr17:50701673 chr17:50762089,chr17:50762093 NA NA chr17:48779027,chr17:48779034 chr17:48839450,chr17:48839454 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Ankyrin_repeats_(many_copies)(62%)| Ank(0%),Ank_2(1%),Ank_3(0%),Ank_4(1%)| 13 22 3 244 65 ENST00000285243.7 ENST00000450727.6 upstream downstream duplicates(2),mismatches(1) CCTAGAGCAGAAGGAGCAGCAGGAGAGGCTGCGGGAGGCCGCGGCCTTAGGGGACATTCGGGAGGTGCAGAAACTGGTGGAGAGCGGGGTGGATGTGAACTCCCAAAATGAGGTCAACGGCTG|GACAAAGACATTCGAAGACTGCGGGACTTTCAGGAAGTGGAACTCATTTTAATGAAAAATGGAAGCTCCAGATTGACAGAATATGTGCCATCTCTGACAGAAAGGCCCTGCTATGATAGCAAAGCTGCAAAAATGACTTATTAAATACTCCCAGGAATG LEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGw|tktfedcgtfrkwnsf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14582 KLK5::CDH23 ENSG00000167754.13::ENSG00000107736.22 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1438 FALSE NA FALSE NA KLK5 ENSG00000167754.13 protein_coding - - chr19:50943303-50953093:- chr19:50948640:- chr19:51446559-51456349:- chr19:51451896:- CDH23 ENSG00000107736.22 protein_coding + + chr10:71396920-71815947:+ chr10:71741694:+ chr10:73156677-73575704:+ chr10:73501451:+ chr19:50944475,chr19:50944478 chr10:71741186,chr10:71741183 NA NA chr19:51447731,chr19:51447734 chr10:73500943,chr10:73500940 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Trypsin(80%)|Cadherin_domain(42%) Trypsin(21%)|Cadherin(13%),V-set(100%),ig(100%) 14 7 5 2636 31 ENST00000593428.5 ENST00000224721.12 upstream upstream inconsistently_clipped(1),mismatches(2) GTCTCCTCTCATTGTCCCTCTGCTGGGACAAAGTGCTTGGTGTCTGGCTGGGGGACAACCAAGAGCCCCCAAG___TGCACTTCCCTAAGGTCCTCCAGTGCTTGAATATCAGCGTGCTAAGTCAGAAAAGGTGCGAGGATGCTTACCCGAGACAGATAGATGACACCATGTTCTGCGCCGGTGACAAAGCAGGTAGAGACTCCTGCCAG|AACGTGGGTGGAGGTACTGCTGTGGTCCAGGTGAGAGCCACTGACCGTGACATCGGGATCAACAGTGTTCTGTCCTACTACATCACCGAGGGCAACAAGGACATGGCCTTCCGCATGGACCGCATCAGCGGTGAGATCGCCACACGGCCTGCCCCGCCTGACCGCGAGCGCCAGAGCTTCTACCACCTGGTGGCCACTGTG VSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQ|NVGGGTAVVQVRATDRDIGINSVLSYYITEGNKDMAFRMDRISGEIATRPAPPDRERQSFYHLVAT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7152 chr10:71790747-71790800:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14586 POLR3A::LRMDA ENSG00000148606.15::ENSG00000148655.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POLR3A ENSG00000148606.15 protein_coding - - chr10:77953148-78029522:- chr10:77999981:- chr10:79712906-79789280:- chr10:79759739:- LRMDA ENSG00000148655.16 protein_coding + - chr10:75431624-76560168:+ chr10:75978514:- chr10:77191382-78319926:+ chr10:77738272:- chr10:77999541,chr10:77999543 chr10:75984731,chr10:75984730 NA NA chr10:79759299,chr10:79759301 chr10:77744489,chr10:77744488 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none RNA_polymerase_Rpb1__domain_1(100%),RNA_polymerase_Rpb1__domain_2(100%),RNA_polymerase_Rpb1__domain_3(100%),RNA_polymerase_Rpb1__domain_4(100%),RNA_polymerase_Rpb1__domain_5(6%)| RNA_pol_Rpb1_1(100%),RNA_pol_Rpb1_2(100%),RNA_pol_Rpb1_3(100%),RNA_pol_Rpb1_4(100%),RNA_pol_Rpb1_5(0%)| 5 4 4 183 11 ENST00000372371.8 unknown upstream downstream none CCAGCTGCCAAAGGCTTTGTGGCTAATAGCTTTTATTCCGGTTTGACACCAACTGAGTTTTTCTTCCACACAATGGCCGGCCGGGAAGGTCTAGTCGACACGGCTGTAAAGACAGCTGAAACGGGATACATGCAG|CTAGCTGTGGCTCTGTGACTAAACTCTGGCCAATGAGATGTCAAAGAATGTCTTACGTGGGACTTGCTGGAAGTTTCCTTAAGAG PAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQ|laval* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14587 ENSG00000261386::AMPD3 ENSG00000261386.2::ENSG00000133805.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1439 FALSE NA FALSE NA ENSG00000261386 ENSG00000261386.2 lncRNA - - chr16:67549214-67563958:- chr16:67563295:- chr16:67583117-67597861:- chr16:67597198:- AMPD3 ENSG00000133805.16 protein_coding + + chr11:10308313-10507579:+ chr11:10461515:+ chr11:10329860-10529126:+ chr11:10483062:+ chr16:67552015,chr16:67552019 chr11:10460544,chr11:10460540 NA NA chr16:67585918,chr16:67585922 chr11:10482091,chr11:10482087 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Adenosine_deaminase(100%) |AMP_deaminase(100%),A_deaminase(100%),RNA_pol_Rpb1_R(100%) 3 6 3 15 28 ENST00000605277.1 ENST00000396554.7 upstream upstream duplicates(1) AGCAGCTCAGCCAGCCTTGCAGAGGGAGCTCTCGGCAGCTCTGGGGTCCCTCTGCTCGCAGCCGCTGCAGCGCCGCCTGCGCCACTCGGCGGAGACGGAGACCAGCGGCGGCGACGCGCGGACTGGGAGCGACCGCCGAGCAGCCAAGCAGCTGGGAAGGCACGCAGGCCGGCAGG|CTGAGATGCCGCGGCAGTTTCCCAAGCTGAACATCTCTGAAGTGGATGAGCAAGTCCGGCTCCTGGCGGAGAAGGTGTTTGCTAAAGTGCTCCGAGAAGAGGACAGCAAAGATGCCCTGTCCCTGTTCACTGTCCCAGAGGACTGCCCCATCGGGCAAAAGGAAGCCAAGGAGAGGGAGCTGCAGAAGGAGCTGGCAGAGCAGAAGTCTGTGGAGACCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14588 RAB28::LINC01182 ENSG00000157869.16::ENSG00000250634.6 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB28 ENSG00000157869.16 protein_coding - - chr4:13361354-13484365:- chr4:13460699:- chr4:13362978-13485989:- chr4:13462323:- LINC01182 ENSG00000250634.6 lncRNA + - chr4:13654374-14003756:+ chr4:13854119:- chr4:13655998-14005380:+ chr4:13855743:- chr4:13433848,chr4:13433851 chr4:13867781,chr4:13867781 NA NA chr4:13435472,chr4:13435475 chr4:13869405,chr4:13869405 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(71%)| Arf(22%),Gtr1_RagA(22%),Ras(21%),Roc(22%)| 5 1 5 90 6 ENST00000338176.8 unknown upstream downstream duplicates(1),mismappers(1) GGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGATAAATATATCTATGGAGCACAG___GGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTGGTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAA|AGATAATCTGAATGTTCCAGCTTCCTCTACAATTTGGTGTGGCCAAATTTTGGTGTGTCTGAGCTGATGGATCATGAGTGGAAGTGTTGAGTGTCACATGAAGACCTAACCTAAAAAATGCCCAGACTCTTGCATAGTCGTCTCCTTTCCATGACCGGAAGCC DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK|kii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14591 GPATCH2::AIM2 ENSG00000092978.11::ENSG00000163568.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPATCH2 ENSG00000092978.11 protein_coding - - chr1:217426992-217631090:- chr1:217449249:- chr1:217600334-217804432:- chr1:217622591:- AIM2 ENSG00000163568.16 protein_coding - + chr1:159061599-159187843:- chr1:159124698:+ chr1:159031389-159157633:- chr1:159094488:+ chr1:217446515,chr1:217446517 chr1:159123237,chr1:159123235 NA NA chr1:217619857,chr1:217619859 chr1:159093027,chr1:159093025 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 4 3 1 54 11 ENST00000366935.8 unknown upstream upstream none GACACAAGAAAAATTGTTCTGTGAGAACAGCCAGCAG___GCAAACAAGCATGCATTTAGGATCCTTATGCACGGGAGATATCAAACGGAGAAGAAAAGCTGCACCTTTGCCTGGACCTACTACTGCAG|AGAACAACCCCTCAGATCACAGCCTTGACCTTCCCAGTGTTTCAGAGGTCCATTGAAGAACCACCAGCGCACCTCTCTCCCCAGCTCAGTAGAGCAGGAGGAAAACAG___CTTCTCAAAAGCCTTCTGAACACATTCATGTGATGAGAGCTATTTCCTGTCTGAGAATGGAA...TGTTGTTTAAGCCACATAGTTTATGGTATTCTGTTTTAGCAGCCTCAAGTAAGACACTAATCCTCCTTCATTCCAAAATACTAAACCCCACAAAAAGCTTC HKKNCSVRTASRQTSMHLGSLCTGDIKRRRKAAPLPGPTTA|ennpsdhsldlpsvsevh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14592 ZNF274::ZNF135 ENSG00000171606.18::ENSG00000176293.20 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2563 FALSE NA ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58207202:+ chr19:58694396-58724928:+ chr19:58718568:+ ZNF135 ENSG00000176293.20 protein_coding + + chr19:58059239-58086310:+ chr19:58081693:+ chr19:58570607-58597677:+ chr19:58593060:+ chr19:58209954,chr19:58209951,chr19:58209950 chr19:58076226,chr19:58076221,chr19:58076219 NA NA chr19:58721320,chr19:58721317,chr19:58721316 chr19:58587594,chr19:58587589,chr19:58587587 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none KRAB_box(49%),SCAN_domain(100%)| KRAB(29%),SCAN(100%)|KRAB(0%) 1 3 3 330 43 ENST00000424679.6 ENST00000515535.1 downstream upstream mismatches(1) TTCCGTTATAAGGACATGACAGGTCCCCGGGAGGCCCTGGACCAGCTCCGAGAGCTGTGTCACCAGTGGCTACAGCCTAAGGCACGCTCCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTAGGTGCACTGCCTGTGAAGCTCCGGACATGGGTGGAATCGCAGCACCCAGAGAACTGCCAAGAGGTGGTGGCCCTGGTAGAGGGTGTGACCTGGATGTCTGAGGAGGAAG|GGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCTCAATCTCAGCTCACTGCAACCTTGACCTCCCAGTTTCAAGCCATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTACGGGTGTGCACCACCGTGCCCAGCTTCAGCCTC...GCCgAGgTAGCCATACAGTGGAAAAACTGCACTCTAACCAGGTGAGCAAAGAGAACATCACTGACAGGAGGAATGTGGACACCGTGCACCCTGGATGGGATGGGGGtAG FRYKDMTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQEVVALVEGVTWMSEEE|gSCSVTQAGVQWLNLSSLQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14605 ENSG00000288534::SMTNL1 ENSG00000288534.1::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2566 FALSE NA ENSG00000288534 ENSG00000288534.1 protein_coding + + chr11:57712582-57818431:+ chr11:57737668:+ chr11:57480054-57585903:+ chr11:57505140:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Calponin_homology_(CH)_domain(33%) |CH(2%) 2 1 3 1507 263 ENST00000674116.1 ENST00000527972.6 downstream upstream mismatches(2) GTCGGCCCTGCTCTCTGCTGCCTTCCTACTCGTGAGGAAACTGCCGCCGCTCTGCCACGGTCTGCCCACCCAACGCGAAGACGGTAACCCGTGTGACTTTGACTGG___AGAGAAGTGGAGATCCTGATGTTTCTCAGTGCCATTGTGATGATGAAGAACCGCAGATCCA|GAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCCCGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAGACCAAGAAGAAGTGAGGAGGTGACTGGCTCTGTGGGCAGAGATGGGCAGGGTGCCCAGCTCAG SALLSAAFLLVRKLPPLCHGLPTQREDGNPCDFDWREVEILMFLSAIVMMKNRRS|rnwltvlscwtwmtwcgwlcptpsasthtsrnctaalcrkdw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14610 SUSD1::PTBP3 ENSG00000106868.17::ENSG00000119314.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112124257:- chr9:114803063-114937577:- chr9:114886537:- PTBP3 ENSG00000119314.16 protein_coding - - chr9:112217716-112333664:- chr9:112297916:- chr9:114979996-115095944:- chr9:115060196:- chr9:112114499,chr9:112114505 chr9:112332629,chr9:112332632 NA NA chr9:114876779,chr9:114876785 chr9:115094909,chr9:115094912 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Calcium-binding_EGF_domain(100%),Sushi_repeat_(SCR_repeat)(100%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),RRM-like_domain(100%) EGF_CA(100%),Sushi(100%),hEGF(100%)|RRM_1(100%),RRM_5(100%),RRM_8(100%) 2 3 1 38 932 ENST00000374270.8 ENST00000343327.6 upstream downstream none CAGGTTCGTTATGCTTGCAGAGAAGGATTCTTCAGTGTTCCAGAAGATACAGTTTCAAGCTGCACAGGCCTGGGCACATGGGAGTCCCCAAAATTACATTG...GGGCTTTGAGAGCCCTGGAGGAAAGATCACTTCTGTTTGCACAGAGAAAGGCACCTGGAGAGAAAGTACTTTAACATGCACAG|CGGGGATCTGATGAGCTTCTTTCTTCTGGCATCATTAACGGACCTTTTACCATGAATAGTTCTACTCCTTCTACAGGTGTGTATG___CTAATGGGAATGACAGCAAGAAATTgAAAtGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCC...AATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTACACTCCTATTACTCCTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACA GFESPGGKITSVCTEKGTWRESTLTCT|agi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14630 PPM1L::TRIM59 ENSG00000163590.14::ENSG00000213186.8 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPM1L ENSG00000163590.14 protein_coding + + chr3:160755602-161078902:+ chr3:160756549:+ chr3:160473390-160796690:+ chr3:160474337:+ TRIM59 ENSG00000213186.8 protein_coding - + chr3:160432445-160485773:- chr3:160478324:+ chr3:160150233-160203561:- chr3:160196112:+ NA NA NA NA NA NA NA NA sense antisense unknown CDS intron duplication/5'-5' low none none none 0 0 2 40 3 ENST00000498165.6 unknown downstream upstream none CATCGTGAAGTCCAGCCGGGACGCCGTGAAGATGGTGAAGGGCAAGGTAGCCGAGATCATGCAGAACGATCGACTCGGGGGGCTTGATGTGCTCGAGGCCG...|...AGGACAAGAAAACTGATGAGAGTTTAGGGATAAAGATGGCAGATAGGAGGCAGGACTAGCTTGCAGCTCCTGCTCAGATGGATAAAGCAGCATGTGGAGACTCATATCATGAACTTTTGCTGCAAGAACTACCGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14646 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1443 TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19651547:+ chr17:19551449-19589073:+ chr17:19554860:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(7%)|Aldehyde_dehydrogenase_family(88%) VHS(0%)|Aldedh(92%),LuxC(100%) 183 300 300 1307 4359 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(217),mismatches(26) CGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|AGTGAATTCAATGTGTACAGTCAGGAAGTCATTACTGTCCTTGGGGAAATTGATTTTATGCTTGAGAATCTTCCTGAATGGGTTACTGCTAAACCAGTTAAGAAGAACGTGCTCACCATGCTGGATGAGGCCTATATTCAGCCACAGCCTCTGGGAGTGGTGCTGATAATCGGAGCTTGGAATTACCCCTTCGTTCTCACCATTCAGCCACTGATAGGAG MEFLLGNPFSTPVGQCL|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14647 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1444 TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19656366:+ chr17:19551449-19589073:+ chr17:19559679:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(7%)|Aldehyde_dehydrogenase_family(63%) VHS(0%)|Aldedh(79%),LuxC(64%) 60 90 152 1307 4513 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(64),mismatches(23) CGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|GATCTCTATATTGTTATTAATGGTGGTGTTGAGGAAACCACGGAGCTCCTGAAGCAGCGATTTGACCACATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCATGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACTCTTGAACTGGGAGGGAAAAGTCCATGTTATATTGATAAAGATTGTGACCTGGACATTGTTTGCAG___ACGCATAACCTGGGGAAAATACATGAATTGTGGCCAAACCTGCATTGCACCCGACTATATTCT MEFLLGNPFSTPVGQCL|gslycy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14648 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19652547:+ chr17:19551449-19589073:+ chr17:19555860:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none VHS_domain(7%)|Aldehyde_dehydrogenase_family(70%) VHS(0%)|Aldedh(90%),LuxC(93%) 1 12 173 1307 4071 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(60),mismatches(24),multimappers(14) CAGGACGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|GAAATGCTGTGATTATAAAGCCTTCTGAACTGAGTGAAAATACAGCCAAGATCTTGGCAAAGCTTCTCCCTCAGTATTTAGACCAG___GATCTCTATATTGTTATTAATGGTGGTGTTGAGGAAACCACGGAGCTCCTGAAGCAGCGATTTGACCACATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCATGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACTCTTGAACTGGG MEFLLGNPFSTPVGQCL|gNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQRFDHIFYTGNTAVGKIVMEAAAKHLTPVTLEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14649 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19655279:+ chr17:19551449-19589073:+ chr17:19558592:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none VHS_domain(7%)|Aldehyde_dehydrogenase_family(63%) VHS(0%)|Aldedh(82%),LuxC(72%) 0 2 154 1307 312 ENST00000581396.5 ENST00000673472.1 upstream upstream duplicates(40),mismatches(21),multimappers(1) CAGGACGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|AGCCATTTTGTTCTAATAGCTGTGATGATCCAATCAAGAAAGATGAAATGGAAGACAGTGAGATGTCAAGGATTGAATAGGACGTAGAACCAGAAGATAGAGGTTGAAG___GATCTCTATATTGTTATTAATGGTGGTGTTGAGGAAACCACGGAGCTCCTGAAGCAGCGATTTGACCACATTTTCTATACGGGAAACACTGC...TGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACTCTTGAACTGGGAGGGAAAAGTCCATGTTATATTGATAAAGATTGTGACCTGGACATTGTTTGCAGG MEFLLGNPFSTPVGQCL|epfcsnscddpikkdemedsemsrie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14650 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19663333:+ chr17:19551449-19589073:+ chr17:19566646:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none VHS_domain(7%)|Aldehyde_dehydrogenase_family(26%) VHS(0%)|Aldedh(50%),LuxC(12%) 5 13 21 1307 5686 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(7),mismatches(1) CAGTCAGGACGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|CCCCAACAGTACTTACCGATGTTGATCCTAAAACCAAGGTGATGCAAGAAGAAATTTTTGGACCAATTCTTCCAATAGTGCCTGTGAAAAATGTAGATGAGGCCATAAATTTCATAAATGAACGTGAAAAGCCTCTGGCTCTTTATGTATTTTCGCATAACCATAAG___CTCATCAAACGGATGATTGATGAGACATCCAGTGGAGGTGTCACAGGCAATGACGTCATTATGCACTTCAC MEFLLGNPFSTPVGQCL|aPTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINEREKPLALYVFSHNHKLIKRMIDETSSGGVTGNDVIMHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14651 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19657745:+ chr17:19551449-19589073:+ chr17:19561058:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none VHS_domain(7%)|Aldehyde_dehydrogenase_family(46%) VHS(0%)|Aldedh(74%),LuxC(54%) 3 2 32 1307 5291 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(7),mismatches(3) GGACGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|ACGCATAACCTGGGGAAAATACATGAATTGTGGCCAAACCTGCATTGCACCCGACTATATTCTCTGTGAAGCATCCCTCCAAAATCAAATTGTATGGAAGATTAAGGAAACAGTGAAG___GAATTTTATGGAGAAAATATAAAAGAGTCTCCTGATTATGAAAGGATCATCAATCTTCGTCATTTTAAGAGGATACTAAGTTTGCTTGAAGGACAAAAGATAGCTTTTGGTGGGGAGACTGATGAGGCCACACG MEFLLGNPFSTPVGQCL|da* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14652 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19661127:+ chr17:19551449-19589073:+ chr17:19564440:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none VHS_domain(7%)|Aldehyde_dehydrogenase_family(37%) VHS(0%)|Aldedh(60%),LuxC(28%) 3 1 24 1307 5074 ENST00000581396.5 ENST00000672465.1 upstream upstream duplicates(5),mismatches(2) GTCAGTCAGGACGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|GAATTTTATGGAGAAAATATAAAAGAGTCTCCTGATTATGAAAGGATCATCAATCTTCGTCATTTTAAGAGGATACTAAGTTTGCTTGAAGGACAAAAGATAGCTTTTGGTGGGGAGACTGATGAGGCCACACGCTACATAG___CCCCAACAGTACTTACCGATGTTGATCCTAAAACCAAGGTGATGCAAGAAGAAATTTTTGGACCAATTCTTCCAATAGTGCCT MEFLLGNPFSTPVGQCL|gilwrkykrvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14653 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19675558:+ chr17:19551449-19589073:+ chr17:19578871:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none VHS_domain(7%)|Aldehyde_dehydrogenase_family(0%) VHS(0%)|Aldedh(0%) 0 1 0 1307 3908 ENST00000581396.5 ENST00000581518.6 upstream upstream none TGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|GCtGAATATTACTGAAGAATGATCCTGTTCAACCTCCTAGTGCCTCTACTGAATTATTCCTCTTTTAAATGGTTAATGAACCAATAATTTTTAAATCATACCAAAAATAGTAAGAAAATAT EFLLGNPFSTPVGQCL|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14654 NUP42::HYCC1 ENSG00000136243.18::ENSG00000122591.13 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUP42 ENSG00000136243.18 protein_coding + + chr7:23181841-23201011:+ chr7:23187146:+ chr7:23221460-23240630:+ chr7:23226765:+ HYCC1 ENSG00000122591.13 protein_coding - + chr7:22889371-23014130:- chr7:22978021:+ chr7:22928990-23053749:- chr7:23017640:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none CCCH-type_zinc_finger(100%)| zf-CCCH(100%),zf-CCCH_2(100%),zf-CCCH_4(100%),zf_CCCH_4(100%)| 24 42 49 497 113 ENST00000438012.5 unknown downstream upstream duplicates(23),inconsistently_clipped(1),low_entropy(1) AGGAAGGAAGGCTTTGGATTGTCTGAGAACCCATTTGCTTCACTTAGTCCTGATGAGCAGAAAGATGAAAAGAAACTTCT___GGAAGGAATTGTAAAAGATATGGAGGTTTGGGAATCATCAGGGCAGTGGATGTTTTCTGTTTATTCACCAGTGAAAAAGAAACCTAATATTTCAG|ATATCTCTATAAAAGAAATGAAATGGTCTGATTTTCAACCTTCAATCAATCCATAAAG___GATAAAAACCATGTGTTACTCAATTTGATTCTCTACTGCCTAGCATAGCCGATGGCTCATAATGGGCACTCAAATACTTGCTGAATGAATAAAATGAAATGCAGTGACATAGACTTTTCAAAGCTACCTCTAGCGAGAGAGAAAAAGAGAGAAAATGTTCAGAGATGGCTTCTGGAATACGGTAA RKEGFGLSENPFASLSPDEQKDEKKLLEGIVKDMEVWESSGQWMFSVYSPVKKKPNIS|disikemkwsdfqpsinp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14655 HSDL2::PTBP3 ENSG00000119471.15::ENSG00000119314.16 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HSDL2 ENSG00000119471.15 protein_coding + + chr9:112380080-112472405:+ chr9:112459577:+ chr9:115142360-115234685:+ chr9:115221857:+ PTBP3 ENSG00000119314.16 protein_coding - + chr9:112217716-112333664:- chr9:112223949:+ chr9:114979996-115095944:- chr9:114986229:+ chr9:112461287,chr9:112461286 chr9:112220120,chr9:112220116 NA NA chr9:115223567,chr9:115223566 chr9:114982400,chr9:114982396 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none SCP-2_sterol_transfer_family(68%),short_chain_dehydrogenase(100%)| SCP2(33%),adh_short(100%),adh_short_C2(100%)| 18 53 24 559 1201 ENST00000398803.1 unknown downstream upstream duplicates(16),mismatches(6) TTAGAATTGTTAAGGACTCTCTCAGTGATGATGTTGTTAAAGCCACTCAAGCAATCTATCTGTTTGAACTCTCCG___GTGAAGATGGTGGCACGTGGTTTCTTGATCTGAAAAGCAAGGGTGGGAATGTCGGATATGGAGAGCCTTCTGATCAGGCAGATGTGGTGATGAGTATGACTACTGATGACTTTGTAAAAATGTTTTCAG|ATCCCAATTGAATGAGCGCCATTTTGCGATCTTTCCTGAAAATGGTATAAGAAATACAGAAAGTATTTAGAATGAATTTTGCTTCCAAACTCCTTCCTCCACCAGAAGACTTCACTGAACTACCTTTAAAATTTGCATACCATATTAAATAATTTTAATGTATTTCTTGAAAGCAAAGACTTACTGAAAGAATTTAAAAGCCTTCACTGAACATCCAGCTTCTATGAAAAGGTTCTTCAGATCATCCACTGTAACAGAAGGGCTGTGAAAACATCAGAGGGAGTCAACTACCTGGGCCGCATTCTCAAGTGAAGCAGATTAACTCTTGCAATCATCAAA RIVKDSLSDDVVKATQAIYLFELSGEDGGTWFLDLKSKGGNVGYGEPSDQADVVMSMTTDDFVKMFS|dpn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14660 DPY30::TTC27 ENSG00000162961.14::ENSG00000018699.13 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPY30 ENSG00000162961.14 protein_coding - - chr2:31867809-32039805:- chr2:32039279:- chr2:32092878-32264874:- chr2:32264348:- TTC27 ENSG00000018699.13 protein_coding + - chr2:32628032-32821051:+ chr2:32764391:- chr2:32853099-33046118:+ chr2:32989458:- chr2:32038445,chr2:32038447 chr2:32764576,chr2:32764576 NA NA chr2:32263514,chr2:32263516 chr2:32989643,chr2:32989643 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 13 15 31 1148 47 ENST00000342166.10 unknown upstream downstream duplicates(15),mismatches(1) GGCGCGGTGCAGGGCTCTTAAGAACGAACGGCTTGGGCGCGG___ACTGGTATCCGGGGACTGTGACTTGCAGGGTCCGCCATGGAGCCAGAGCAGATGCTGGAGGGACAAACGCAG___GTTGCAGAAAATCCTCACTCTGAGTACGGTCTCACAGACAACGTTGAG|ACATAATAGTATTGCACACTTGATAGACTACAGCATAAACTCAACCTTTATGTGCCTGGGAAACCAAAAAATTCGCATGACTTGCTTTATTACAATATTTGCTTTACTGCGGTGGCCTGGAACTGAATCTACAGTATCTCTGTGGTATGCTTGTACATATACTGTTCACAGTATCATATAATCTCACAAAG___GTCTTAAAGGAGACAACATAGCATATAGGCGTTCTCCCTCCAGACAGTTCAAACTTGGTTCACAGTTAAAATGAGTCTACAGTGTTCAAGTTTGCATCTTGTAGTAGTTCTGTACAATT MEPEQMLEGQTQVAENPHSEYGLTDNVE|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14661 DAP3::ASH1L ENSG00000132676.16::ENSG00000116539.14 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155709824:+ chr1:155657751-155708801:+ chr1:155679615:+ ASH1L ENSG00000116539.14 protein_coding - + chr1:155335268-155563162:- chr1:155514574:+ chr1:155305059-155532953:- chr1:155484365:+ chr1:155711504,chr1:155711502 chr1:155493777,chr1:155493775 NA NA chr1:155681295,chr1:155681293 chr1:155463568,chr1:155463566 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 5 10 25 802 24 ENST00000471642.6 unknown downstream upstream duplicates(9),mismappers(12),mismatches(3) GGGCGCTTTGGAGCCGGCCCCAGGCAGCGTGTGTCGGTCGCCTAGgCTGGAGAACTAGTCCTCGACTCACG___TGCAAGGATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAG|ACTATGGAAATGTTAGACTAAAAGCAAATTCAAGCGATCTTCTTATTTGGGTTTAAAATGGGTCATAAAGCAGTGGAGACGATTTGCAACATCAACAACGCATTTGGCCCAGGAACTGCTAATGAATGTACAGTACAGCGGTGGTTCAGGAAGTTTTGCAAAGGAGGTAAGAGCCTTGAAGATAAGAAGCACAGTGGCTGGCTGTCAGAAGCTCACAACAACTGAGAGCAATCATCG MMLKGITRLISRIHK|tmemld* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14662 BARD1::EPHA6 ENSG00000138376.11::ENSG00000080224.18 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BARD1 ENSG00000138376.11 protein_coding - - chr2:214725646-214809683:- chr2:214809412:- chr2:215590370-215674407:- chr2:215674136:- EPHA6 ENSG00000080224.18 protein_coding + + chr3:96814581-97761532:+ chr3:97099583:+ chr3:96533425-97480376:+ chr3:96818427:+ chr2:214808062,chr2:214808080 chr3:97098919,chr3:97098901 NA NA chr2:215672786,chr2:215672804 chr3:96817763,chr3:96817745 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none zf-RING_of_BARD1-type_protein(18%)|Ephrin_type-A_receptor_2_transmembrane_domain(100%),Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) zf-RING_6(0%)|EphA2_TM(100%),Ephrin_rec_like(53%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SAM_1(100%),SAM_2(100%),fn3(100%) 19 9 10 90 52 ENST00000260947.9 unknown upstream upstream duplicates(4),low_entropy(1),mismatches(3) CCCGCCGTCCCAGACGCGGGAAGAGCTTGGCCGGTTTCGAGTCGCTGaCCTGCAGCTTCCCTGTGGTTTCCCGAGGCcTCCTTGCTTCCCGCTCTcCGAGGAGCCTTTCATCCGAAGGCGGGACGATGCCGGATAATCGGCAGCCGAGGAACCGGCAGCCGAGGATCCGCTCCGGGAACGAGCCTCGTTCCGCGCCCGCCATGGAACCGGATGGTCGCGGTGCCTGGGCCCACAGTCGCGCCGCGCTCGACCGCCTGGAGAAGCTGCTGCGCTGCTCGCGTTG|CATATCTTATCGCCGAGTGGGATCATGTGACCTGTTTCTGGATACTGGAATGTTGATTAAAGTAGAATATGCCACTTTCTGGTCTTGCTCATTAAAAGACCTTCCTGATTATCTGCCAAGCTCTCTCCATCTTTCTTCTCACAtCCTGATGATGAAAATCCAGTGGAGGACCCCAAAGCCCTGAAGATATGTTGAAGTGTAAGATGGAAGTAACCTAGATCCTGAATGATCATATGGAGCAAAGTCCCACAGCTGACTAC MPDNRQPRNRQPRIRSGNEPRSAPAMEPDGRGAWAHSRAALDRLEKLLRCSRc|isyrrvgscdlfldtgmlikveyatfwscslkdlpdylpsslhlsshilmmkiqwrtpkp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ephrin type-A receptor 6 TK Eph Q9UF33 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE BRCA1 associated RING domain 1 1 Yes breast cancer ovarian cancer, breast cancer, endometrioid cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 14663 RBM47::MGAT4C ENSG00000163694.15::ENSG00000182050.14 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RBM47 ENSG00000163694.15 protein_coding - - chr4:40423267-40630875:- chr4:40629396:- chr4:40425284-40632892:- chr4:40631413:- MGAT4C ENSG00000182050.14 protein_coding - + chr12:85955666-86838904:- chr12:86514634:+ chr12:86349445-87232681:- chr12:86908411:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 12 16 9 202 63 ENST00000295971.12 unknown upstream upstream duplicates(2),mismappers(21),mismatches(2) GTTGCTTTAAGCGGCGCGGTGGGGAGTCGCTGGACACTCCTTATTTTGGTTTTACATTAAAAAGAAGGCGGACGAGAAGATGTTGTAGGTGACTTCCTAGCTGTGTTAAGTTGCTCCTGGGCTGTGAATGGTGTTAATTTCTGAAGTGGGCGGCTCCAAAAACTTAACAAGGAAAG|ATAAAAGAACCCTGTGACTACATTGGACACACTCTGATAATGCTGGATAATCTCTCCATTTCAAG___AGATGGAGTCTTGCTCTGTCCCCAGGCTGGAATGCAGTGGCGTGATCTCGGCTCACTGCAAGTTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACGACAGGCGCCCG...TGGGTTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14665 RNF103::CD8A ENSG00000239305.7::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1447 TRUE 2574 TRUE 987 RNF103 ENSG00000239305.7 protein_coding - - chr2:86603398-86623866:- chr2:86612159:- chr2:86830521-86850989:- chr2:86839282:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86788560:- chr2:87011733-87035519:- chr2:87015683:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 4 13 15 106 42 ENST00000237455.5 ENST00000409511.6 upstream downstream duplicates(4),low_entropy(1),mismatches(1) CCGGGAGCTGGTGGAAAAGTCAG___GTGACTTGATGGAGGGTGAGCTCTATTCTGCTCTCAAGGAAGAAGAAGCATCCGAATCGGTTTCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTGGAAGACACAAAAGATGGCATCTGGCTGGTTCAG___GTCATAGCAAATGACAGAAGTCCCTTGGTGGGCAAAATTCACTGGGAGAAAATGGTTAAAAAGGTGTCAAGATTTGGAATACGTACAGGCACATTTAACTGTTCCAGTGATCCCAG|GGAACCGAAGACGTGTTTGCAAATGTCCCCG___GCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGATACGTCTAACCCTGTGCAACAGCCACTACATTACTTCAAACTGAGATCCTTCCTTTTGAGGGAGCAAGTCCTTCCCTTTCATTTTTTCCAGTCTTCCTCCCTGTGTATTCATTCTCATGATTATTATTTTAGTGGGGGCGGGGTGGGAAAGATTACTTTTTCTTTATGTGTTTGACGGGAAACAAAACTAGGTAAAATCTACAGTACACCACAAGGGTCACAATACTGTTGTGCG RELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPr|epktclqmspacgqigrqaqpfgeirltlcnshyitsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14666 RNF103::CD8A ENSG00000239305.7::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2574 TRUE 987 RNF103 ENSG00000239305.7 protein_coding - - chr2:86603398-86623866:- chr2:86612159:- chr2:86830521-86850989:- chr2:86839282:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86791095:- chr2:87011733-87035519:- chr2:87018218:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Immunoglobulin_V-set_domain(100%) |V-set(100%) 1 2 16 106 6 ENST00000237455.5 ENST00000409511.6 upstream downstream duplicates(3),mismatches(1) TCaGAcTCGGaTTCTcGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTGGAAGACACAAAAGATGGCATCTGGCTGGTTCAG___GTCATAGCAAATGACAGAAGTCCCTTGGTGGGCAAAATTCACTGGGAGAAAATGGTTAAAAAGGTGTCAAGATTTGGAATACGTACAGGCACATTTAACTGTTCCAGTGATCCCAG|TTTTCAGCTGCCCCCAGTTGCCTGGCCAGGCTGCCTCGACGGCCCTATTCACGGGCCCCAGCCTCCTCGCCGGGCTGGAAGGCGACAACCGCGAAAAGGAGGGTGACTCTCCTCGGCGGGGGCTTCG SdSdSrTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPs|fqlppvawpgcldgpihgpqpprragrrqprkgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14667 RNF103::CD8A ENSG00000239305.7::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2574 TRUE 987 RNF103 ENSG00000239305.7 protein_coding - - chr2:86603398-86623866:- chr2:86612159:- chr2:86830521-86850989:- chr2:86839282:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86785971:- chr2:87011733-87035519:- chr2:87013094:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 1 0 10 106 35 ENST00000237455.5 ENST00000409511.6 upstream downstream duplicates(2),mismatches(1) CTCTATTCTGCTCTCAAGGAAGAAGAAGCATCCGAATCGGTTTCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTGGAAGACACAAAAGATGGCATCTGGCTGGTTCAG___GTCATAGCAAATGACAGAAGTCCCTTGGTGGGCAAAATTCACTGGGAGAAAATGGTTAAAAAGGTGTCAAGATTTGGAATACGTACAGGCACATTTAACTGTTCCAGTGATCCCAG|GCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGATACGTCTAACCCTGTGCAACAGCCACTACATTACTTCAAACTGAGATCCTTCCTTTTGAGGGAGCAAGTCCTTCCCTTTCATTTTTTCCAGTCTTCCTCCCTGTGTATTCATTCTCATGATTATTATTTTAGTGGGGGCGGGGTGGGAAAGATTACTTTTTCTTTATGTGTTTGACGGGAAACAAAACTAGGTAAAATCTAC LYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPr|PVVKSGDKPSLSARYV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14668 RNF103::CD8A ENSG00000239305.7::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2574 TRUE 987 RNF103 ENSG00000239305.7 protein_coding - - chr2:86603398-86623866:- chr2:86620330:- chr2:86830521-86850989:- chr2:86847453:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86788560:- chr2:87011733-87035519:- chr2:87015683:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 0 2 8 163 42 ENST00000237455.5 ENST00000409511.6 upstream downstream duplicates(3) CTTCAAGAAGCcGAAGACCATTTTGGAGTGCCGGGGGTTGGGCTACTCAGGGTTGCCCGAGAAGAAGGATGTCCGGGAGCTGGTGGAAAAGTCAG___GTGACTTGATGGAGGGTGAGCTCTATTCTGCTCTCAAGGAAGAAGAAGCATCCGAATCGGTTTCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTGGAAGACACAAAAGATGGCATCTGGCTGGTTCAG|GGAACCGAAGACGTGTTTGCAAATGTCCCCG___GCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGATACGTCTAACCCTGTGCAACAGCCACTACATTACTTCAAACTGAGATCCTTCCTTTTGAGGGAGCAAGTCCTTCCCTTTCATTTTTTCCAGTCTTCCTCCCTGTGTATTCATTCTCAT...GGGAAAGATTACTTTTTCTTTATGTGTTTGACGGGAAACAAAACTAGGTAAAATCTACAGTACACCACAAGGGTCACAATACTGTTGTGCGCACATCGCGG FKKpKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQ|gtedvfanvpglwsnretspafrrdtsnpvqqplhyfklrsfllreqvlpfhffqssslcihs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14670 SRD5A1::NSUN2 ENSG00000145545.12::ENSG00000037474.15 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1448 FALSE NA FALSE NA SRD5A1 ENSG00000145545.12 protein_coding + + chr5:6633427-6674386:+ chr5:6633869:+ chr5:6633540-6674499:+ chr5:6633982:+ NSUN2 ENSG00000037474.15 protein_coding - - chr5:6599239-6633291:- chr5:6607384:- chr5:6599352-6633404:- chr5:6607497:- chr5:6634032,chr5:6634033 chr5:6607638,chr5:6607637 NA NA chr5:6634145,chr5:6634146 chr5:6607751,chr5:6607750 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 8 5 9 101 1277 ENST00000274192.7 ENST00000264670.11 downstream downstream duplicates(3) GCGCGGGCCGCCTGGGTGGTGCAGGAGCTGCCCTCGCTGGCCCTGCCGCTCTACCAGTACGCCAGCGAGTCCGCCCCGCGTCTCCGCAGCGCGCCCAACTGCATCCTCCTGGCCATGTTCCTCGTCCACTACGGGCATCG|CTTCAGGGTAAATCTGCAGAGACCAGAGAAAGCACACAGCTGAGCCCTGCAGATCTCACAGAAGGGAAACCCACAGATCCCTCTAAGCTGGAAAGTCCGTCATTCACAGGAACTGGTGACACAGAAATAGCTCATGCAACTGAGGATTTAGAGAATAATGGCAGTAAGAAAGATGGCGTGTGTGG___TCCTCCTCCATCAAAGAAAATGAAGTTATTTGGATTTAAAGAAGATCCATTTGTATTTATTCCTGAAGATGACCCATTAT ARAAWVVQELPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHr|frvnlqrpekahs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14671 MIPOL1::SLC25A21 ENSG00000151338.21::ENSG00000183032.12 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37270525:+ chr14:37667099-38048330:+ chr14:37739730:+ SLC25A21 ENSG00000183032.12 protein_coding - + chr14:36677921-37172606:- chr14:36936773:+ chr14:37147126-37641811:- chr14:37405978:+ chr14:37279170,chr14:37279171 chr14:36933972,chr14:36933970 NA NA chr14:37748375,chr14:37748376 chr14:37403177,chr14:37403175 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 5 6 184 19 ENST00000537471.7 unknown downstream upstream duplicates(7),mismatches(1) AGTCTGTTTACTGCACTACTGAAAAATACAA___CGTTATGGAACATAGACATAATGATATGCATTATGAATGTATGACTCCTTGTCAAGTTACTTCAGACTCAGATAAAGAGAAGACAATAGCATTTCTTCTAAAAGAATTGGATATTCTCAGAACAAGCAATAAAAAG___CTTCAGCAGAAATTGGCTAAAGAAGATAAAGAACAGAGAAAACTAAAGTTTAAGCTGGAACTCCAAGAGAAAGAAACAGAAGCTAAAATTGCTGAAAAGACAGCAG|ATCCAGAAGAAAATCATGCAGTCTCTAAATCTGATATCCTAGAAGAACTACAAAATTTGATATTCATTGAGAAACATGGTAAATCCCCACACAGGAGGAGATCAATGCACAATGCTGTCCCTTCACTTTGCTGCGTGTATTCCTGCTGCTGGAGGCTCATTTATAACAGTGTACCTGGAGCCATAAGGTCATGGCTAGGGTCTCTTTCTATGGTACAACAAGGA SVYCTTEKYNVMEHRHNDMHYECMTPCQVTSDSDKEKTIAFLLKELDILRTSNKKLQQKLAKEDKEQRKLKFKLELQEKETEAKIAEKTA|dpeenhavsksdileelqnlifiekhgksphrrrsmhnavpslccvysccwrliynsvpgairswlgslsmvqq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14673 RNF103-CHMP3::CD8A ENSG00000249884.8::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF103-CHMP3 ENSG00000249884.8 protein_coding - - chr2:86505668-86721122:- chr2:86620330:- chr2:86732791-86948245:- chr2:86847453:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86788560:- chr2:87011733-87035519:- chr2:87015683:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 0 2 8 163 42 ENST00000440757.2 ENST00000409511.6 upstream downstream duplicates(3) CTTCAAGAAGCcGAAGACCATTTTGGAGTGCCGGGGGTTGGGCTACTCAGGGTTGCCCGAGAAGAAGGATGTCCGGGAGCTGGTGGAAAAGTCAG___GTGACTTGATGGAGGGTGAGCTCTATTCTGCTCTCAAGGAAGAAGAAGCATCCGAATCGGTTTCTAGTACCAATTTCAGTGGTGAAATGCACTTCTATGAGCTTGTGGAAGACACAAAAGATGGCATCTGGCTGGTTCAG|GGAACCGAAGACGTGTTTGCAAATGTCCCCG___GCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGATACGTCTAACCCTGTGCAACAGCCACTACATTACTTCAAACTGAGATCCTTCCTTTTGAGGGAGCAAGTCCTTCCCTTTCATTTTTTCCAGTCTTCCTCCCTGTGTATTCATTCTCAT...GGGAAAGATTACTTTTTCTTTATGTGTTTGACGGGAAACAAAACTAGGTAAAATCTACAGTACACCACAAGGGTCACAATACTGTTGTGCGCACATCGCGG FKKpKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQ|gtedvfanvpglwsnretspafrrdtsnpvqqplhyfklrsfllreqvlpfhffqssslcihs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14674 ERBB4::INTS2 ENSG00000178568.16::ENSG00000108506.14 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2575 TRUE 988 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- INTS2 ENSG00000108506.14 protein_coding - - chr17:61865367-61928016:- chr17:61875038:- chr17:59942728-60005377:- chr17:59952399:- chr2:212007281,chr2:212007265,chr2:212007261,chr2:212007244 chr17:61877397,chr17:61877397,chr17:61877397,chr17:61877397 NA NA chr2:212872006,chr2:212871990,chr2:212871986,chr2:212871969 chr17:59954758,chr17:59954758,chr17:59954758,chr17:59954758 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Receptor_L_domain(10%)|Integrator_complex_subunit_2(27%) Recep_L_domain(0%)|INTS2(12%) 0 1 5 65 141 ENST00000436443.5 ENST00000444766.7 upstream downstream duplicates(1),mismatches(1) CTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG___TGTGTGCAGGAACGGAGAATAAACTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGA...CGGGACCTCTCCTTCCTGCGG|GCTATGGGTAATGACGGTTAATGCACTTCAGCCTTCAATAAAGTTTGTACGACAACAAAAGTATACTCAGAATGACCTGATGATAGATCCTCTCATTGTCCTAAGGTGTGATCAGAGGGTTCACAG___ATGCCCCCCACTGATGGATATTACCCTACACATGTTGAATGGATATCTTCTTGCATCTAAAGCCTACCTTAGTGCTCA RDLSFLR|amgndg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 14675 ERBB4::INTS2 ENSG00000178568.16::ENSG00000108506.14 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2575 TRUE 988 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- INTS2 ENSG00000108506.14 protein_coding - - chr17:61865367-61928016:- chr17:61872460:- chr17:59942728-60005377:- chr17:59949821:- chr2:212007281,chr2:212007265,chr2:212007261,chr2:212007244 chr17:61877397,chr17:61877397,chr17:61877397,chr17:61877397 NA NA chr2:212872006,chr2:212871990,chr2:212871986,chr2:212871969 chr17:59954758,chr17:59954758,chr17:59954758,chr17:59954758 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Receptor_L_domain(10%)|Integrator_complex_subunit_2(24%) Recep_L_domain(0%)|INTS2(7%) 1 1 2 65 208 ENST00000436443.5 ENST00000444766.7 upstream downstream none CTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG___TGTGTGCAGGAACGGAGAATAAACTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG|ATGCCCCCCACTGATGGATATTACCCTACACATGTTGAATGGATATCTTCTTGCATCTAAAGCCTACCTTAGTGCTCATCTGAAGGAAA?????????A?????CTTCCCAGAATAATACAATTGGTTTAGTTGGACAAACTGATGCT?CGGAAGTTACCAGGGAAGAATTGAAAAATGCATTACTGGCCGCTCAG___GATAGTGCAGCTGTCCAGATTCTCTTAGAGATTTGCCTACCTACTGAAGAGGAGAAAGCAAATGGTGTCAATCCAGATAGCTTGTTAAGA LLVAAGTVQPSDSQSVCAGTENKLSSLSDLEQQYRALRKYYENCEVVMGNLEITSIEHNRDLSFLR|mpptdgyypthvewissci* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 14676 CELSR1::EIF4G3 ENSG00000075275.18::ENSG00000075151.24 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CELSR1 ENSG00000075275.18 protein_coding - - chr22:46360834-46537620:- chr22:46361573:- chr22:46756731-46933517:- chr22:46757470:- EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21089213:- chr1:21132785-21503778:- chr1:21415706:- NA NA NA NA NA NA NA NA sense sense unknown 3'UTR CDS/splice-site translocation high none 7_transmembrane_receptor_(Secretin_family)(100%),Cadherin_domain(100%),EGF-like_domain(100%),GPCR-Autoproteolysis_INducing_(GAIN)_domain(100%),GPCR_proteolysis_site__GPS__motif_(100%),Hormone_receptor_domain(100%),Laminin_EGF_domain(100%),Laminin_G_domain(100%)|MA3_domain(100%),MIF4G_domain(100%),eIF4-gamma/eIF5/eIF2-epsilon(100%) 7tm_2(100%),Cadherin(100%),Dicty_CAR(100%),EGF(100%),GAIN(100%),GPS(100%),HRM(100%),Laminin_EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%)|MA3(100%),MIF4G(100%),W2(100%) 1 1 3 327 116 ENST00000262738.9 ENST00000685872.1 upstream downstream duplicates(2),mismappers(1) TGAGCACTGTTAGCAGATGCCTATGGGAGAGGAAAAGCGTATCTGAAAATGGTCCAGGACAGGAGGATGAAATGAGATCCCAGAGTCCTCACACCTGAATGAATTATACATGTGCCTTACCAG|AATTCCTAGAGGACCTGTGCAACAACCTCTTGAGGATCGAATCTTCACTCCCGCTGTCTCAGCAGTCTACAGCACG___GTAACACAAGTGGCAAGACAGCCGGGAACCCCTACCCCATCCCCTTATTCAGCACATGAAATAAAC...GGTCCAACCACGCTGGTATACCCTCAAACCCCTCAGACAATGAATTCACAACCTCAAACCCGTTCTCCG___TTTTTCCAGAGGCCTCAAATACAGCCTCCTAG...ACTGCAGTGTACCAGGCTAATCAGCACATCATGATGGTTAACCATCTGCCCATGCCGTACCCAGTGCCCCAGGGGCCTCAGTACTGTATACCACAG___TACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1256 chr1:20988314-20988432:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14679 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:212057306,chr2:212057308 chr2:212675450,chr2:212675449 NA NA chr2:212922031,chr2:212922033 chr2:213540174,chr2:213540173 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Receptor_L_domain(10%)| Recep_L_domain(0%)| 2 2 0 65 6 ENST00000436443.5 ENST00000415387.1 upstream downstream duplicates(1) GGGATCTGAGACTTCCAAAAcATGAAGCCGGCGACAGGACTTTGGGTCTGGtTGAGCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTC...GCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG|CATTATTCAAAAGAGCCAAGATATGGAAGCAACTGAAGTGCTCATCAACAG___GGTTTCATTCTGTCACCCAGGCTGGAGTGCAGTGGCACAGACTCAGCTCACTGCAACCTCTCCCTCC QYRALRKYYENCEVVMGNLEITSIEHNRDLSFLR|hyskeprygsn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 14681 CNNM2::NT5C2 ENSG00000148842.18::ENSG00000076685.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNNM2 ENSG00000148842.18 protein_coding + + chr10:102918294-103090222:+ chr10:102920101:+ chr10:104678051-104849979:+ chr10:104679858:+ NT5C2 ENSG00000076685.19 protein_coding - - chr10:103087185-103277605:- chr10:103143168:- chr10:104846942-105037362:- chr10:104902925:- chr10:103045649 chr10:103154947 NA NA chr10:104805406 chr10:104914704 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none CBS_domain(39%),Cyclin_M_transmembrane_N-terminal_domain(100%)|5'_nucleotidase_family(100%) CBS(0%),DUF21(100%)|5_nucleotid(100%) 2 0 1 37 2 ENST00000369878.9 unknown downstream downstream none AAAGACTTGGCCTTCGTGGATCCCGATGACTGTACCCCCCTGAAAACCATCACCAAATTTTATAACCACCCCTTGCACTTTGTTTTCAATGACACCAAGTTGGACGCTATGCTGGAAGAATTTAAGAAAG|TTACTTATGAAATGAAGACAAAGAAAAGGTTTGGTAATAAGAGGAGAAGCCATGCAGTTTTAACTTTGGCTACCAAGCTGAGGATCAAGTGGAAAGGATAACCTTATTTTCTGTCTTTTCCCTTTCCGTTCCCT KDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKK|vtyemktkkrfgnkrrshavltlatklrikwkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 5'-nucleotidase, cytosolic II 1 Yes relapse ALL leukaemia_lymphoma oncogene missense 14682 NT5C2::CNNM2 ENSG00000076685.19::ENSG00000148842.18 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NT5C2 ENSG00000076685.19 protein_coding - - chr10:103087185-103277605:- chr10:103174858:- chr10:104846942-105037362:- chr10:104934615:- CNNM2 ENSG00000148842.18 protein_coding + - chr10:102918294-103090222:+ chr10:103015825:- chr10:104678051-104849979:+ chr10:104775582:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none Filament_head(100%),Ribul_P_3_epim(100%)| 0 0 7 173 4 ENST00000343289.9 unknown upstream downstream duplicates(1),mismappers(2),mismatches(1) CGCGCGTTGAGGCGGCTGCGGCAGgTGCGCGCTGGGATTGTTGCcGTGCGCTGGAGCCG___AATACAAAATACAGTTAAAATAAAATGTCAACCTCCTGGAGTGATCGGTTACAGAATGCAGCAGATATGCCTGCTAACATGGATAAGCATGCCCTGAAAAAGTATCGTCGAGAAGCCTATCATCG|GTTGGAGTGCAGTGGCATGATCTCAGCTCACTGGAACTTCTACCTCC MSTSWSDRLQNAADMPANMDKHALKKYRREAYHr|lecsgmisahwnfyl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE 5'-nucleotidase, cytosolic II 1 Yes relapse ALL leukaemia_lymphoma oncogene missense FALSE NA NA NA NA NA NA NA NA NA 14683 SLC52A1::APPBP2-DT ENSG00000132517.15::ENSG00000259349.4 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2576 FALSE NA SLC52A1 ENSG00000132517.15 protein_coding - - chr17:5032600-5052009:- chr17:5050705:- chr17:4935895-4955304:- chr17:4954000:- APPBP2-DT ENSG00000259349.4 lncRNA + + chr17:60526272-60550798:+ chr17:60550737:+ chr17:58603633-58628159:+ chr17:58628098:+ chr17:5036829,chr17:5036831 chr17:60550539,chr17:60550537 NA NA chr17:4940124,chr17:4940126 chr17:58627900,chr17:58627898 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 0 2 150 7 ENST00000512825.7 ENST00000558027.1 upstream upstream duplicates(1),mismatches(1) CTGGGATTACAGGCATGTGCCACCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCGCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCgGGTGATCCACGCCCCC...ATTACAGGCACGAACTACTATGCCTGGGATTAACCTGTATCTTTTGACTTATTAACTTGTCTGTGCTTACTGGAGTGGCACTCTGAGCTGAGCCTGGACAG|CCGCCGCCGCCCGACCGCCGGGAGGATGGAGTTCAGCGGGCAGCGGAGCTGTCTCAGTCTTTGCCGCCGCGCCGGCGAGCGCCGCCCGGGAGGCAGCGGCTGGAGGAGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14712 ERBB4::BRIP1 ENSG00000178568.16::ENSG00000136492.10 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2579 TRUE 989 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61716063:- chr17:59756500-59940920:- chr17:59793424:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |Helicase_C-terminal_domain(37%) |Helicase_C_2(33%) 1 0 0 77 310 ENST00000436443.5 ENST00000259008.7 upstream downstream duplicates(1) GGGGATATGCCATTTGGACATGTAATTGTCAGCACGGGATCTGAGACTTCCAAAAAATGAAGCCGGCGACAGGACTTTGGGTCTGGGTGAGCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG|GTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGC MKPATGLWVWVSLLVAAGTVQPSDSQS|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense 14713 ERBB4::BRIP1 ENSG00000178568.16::ENSG00000136492.10 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2579 TRUE 989 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61744591:- chr17:59756500-59940920:- chr17:59821952:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |Helicase_C-terminal_domain(89%) |Helicase_C_2(64%) 0 1 0 77 210 ENST00000436443.5 ENST00000259008.7 upstream downstream none GCCTTCTCGTGGCGGCGGGGACCGTCCAGCCCAGCGATTCTCAGTCAG|TTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCT...AATCAAATACAAAGGAGAGAAAG___ATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTG LLVAAGTVQPSDSQS|virkikrtlalywfma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense 14719 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1451 TRUE 2581 TRUE 990 CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94890415:- chr8:95891998-95908906:- chr8:95902643:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86474953:- chr8:87480486-87526586:- chr8:87487182:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cyclin__N-terminal_domain(31%)| Cyclin_N(2%)| 140 134 298 1620 879 ENST00000520509.5 ENST00000406452.8 upstream downstream duplicates(43),mismatches(28),multimappers(2) TTGCATTATCATTGAAACACCTCACAAAGAAATAGGAACAAGTGATTTCTCCAGATTTACAAATTACAGATTTAAAAATCTTTTTATTAATCCTTCACCTTTGCCTGATTTAAG___CTGGGGATGTTCAAAAGAAGTCTGGCTAAACATGTTAAAAAAGGAGAGCAGATATGTTCATGACAAACATTTTGAAGTTCTGCATTCTGACTTGGAACCACAGATGAGGTCCATACTTCTAGACTGGCTTTTAGAG|TGGATCCAAACTTCTACAGCAAAAACTTACTTCTTTTAGGAAAGACATACTTGAAACTACACAACAAAAAGCTTGCTGCTTTCTGGCTAATGAAAGCCAAGGACTATCCAGCACACACAGAGGAGGATAAACAG___ATACAGACAGAAGCTGCTCAGTTGCTTACAAGTTTCAGTGAGAAGAATTGAGAACTTTTCAGAGAAGATTTATGAAATAGC CIIIETPHKEIGTSDFSRFTNYRFKNLFINPSPLPDLSWGCSKEVWLNMLKKESRYVHDKHFEVLHSDLEPQMRSILLDWLLE|wiqtstaktyff* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14720 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2581 TRUE 990 CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94890415:- chr8:95891998-95908906:- chr8:95902643:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86474914:- chr8:87480486-87526586:- chr8:87487143:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Cyclin__N-terminal_domain(31%)| Cyclin_N(2%)| 10 5 221 1620 1101 ENST00000520509.5 ENST00000519966.5 upstream downstream duplicates(16),mismatches(12),multimappers(2) CTCACAAAGAAATAGGAACAAGTGATTTCTCCAGATTTACAAATTACAGATTTAAAAATCTTTTTATTAATCCTTCACCTTTGCCTGATTTAAG___CTGGGGATGTTCAAAAGAAGTCTGGCTAAACATGTTAAAAAAGGAGAGCAGATATGTTCATGACAAACATTTTGAAGTTCTGCATTCTGACTTGGAACCACAGATGAGGTCCATACTTCTAGACTGGCTTTTAGAG|GAAAGACATACTTGAAACTACACAACAAAAAGCTTGCTGCTTTCTGGCTAATGAAAGCCAAGGACTATCCAGCACACACAGAGGAGGATAAACAG___ATACAGACAGAAGCTGCTCAGTTGCTTACAAGTTTCAGTGAGAAGAATTGAGAACTTTTCAGAGAAGATTTATGAAATAGCTAA HKEIGTSDFSRFTNYRFKNLFINPSPLPDLSWGCSKEVWLNMLKKESRYVHDKHFEVLHSDLEPQMRSILLDWLLE|erht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14721 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2581 TRUE 990 CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94892818:- chr8:95891998-95908906:- chr8:95905046:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86474914:- chr8:87480486-87526586:- chr8:87487143:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none none none 1 0 111 1745 1101 ENST00000520509.5 ENST00000519966.5 upstream downstream duplicates(10),mismatches(6),multimappers(2) CCAG___GATGTCAAAAAAAGAAGAGAGGAGGTCACCAAGAAACATCAGTATGAAATTAGG___AATTGTTGGCCACCTGTATTATCTGGGGGGATCAGTCCTTGCATTATCATTGAAACACCTCACAAAGAAATAGGAACAAGTGATTTCTCCAGATTTACAAATTACAGATTTAAAAATCTTTTTATTAATCCTTCACCTTTGCCTGATTTAAG|GAAAGACATACTTGAAACTACACAACAAAAAGCTTGCTGCTTTCTGGCTAATGAAAGCCAAGGACTATCCAGCACACACAGAGGAGGATAAACAG___ATACAGACAGAAGCTGCTCAGTTGCTTACAAGTTTCAGTGAGAAGAATTGAGAACTTTTCAGAGAAGATTTATGAAATAGCTAATA QDVKKRREEVTKKHQYEIRNCWPPVLSGGISPCIIIETPHKEIGTSDFSRFTNYRFKNLFINPSPLPDLr|kdilettqqkaccflanesqglssthrgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14722 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2581 TRUE 990 CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94890415:- chr8:95891998-95908906:- chr8:95902643:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86474358:- chr8:87480486-87526586:- chr8:87486587:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Cyclin__N-terminal_domain(31%)| Cyclin_N(2%)| 2 1 70 1620 690 ENST00000520509.5 ENST00000406452.8 upstream downstream mismatches(2),multimappers(2) GTGATTTCTCCAGATTTACAAATTACAGATTTAAAAATCTTTTTATTAATCCTTCACCTTTGCCTGATTTAAG___CTGGGGATGTTCAAAAGAAGTCTGGCTAAACATGTTAAAAAAGGAGAGCAGATATGTTCATGACAAACATTTTGAAGTTCTGCATTCTGACTTGGAACCACAGATGAGGTCCATACTTCTAGACTGGCTTTTAGAG|ATACAGACAGAAGCTGCTCAGTTGCTTACAAGTTTCAGTGAGAAGAATTGAGAACTTTTCAGAGAAGATTTATGAAATAGCTAATAAACATTGCCTTTTCTTTTAATTCTAAACTTAATATATGAACTATAACTGTTCTACGGCTTTTTAAATGTTGTGACCATTTAACCGTGTAAATATAAAATATTCTAGGCTTCTTCACAAATAATAGGGTAAAATAAATAATCGCCATAAGAGTGGTAGAAATAAATCTCCAT DFSRFTNYRFKNLFINPSPLPDLSWGCSKEVWLNMLKKESRYVHDKHFEVLHSDLEPQMRSILLDWLLE|IQTEAAQLLTSFSEKN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14723 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2581 TRUE 990 CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94890415:- chr8:95891998-95908906:- chr8:95902643:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86470410:- chr8:87480486-87526586:- chr8:87482639:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Cyclin__N-terminal_domain(31%)| Cyclin_N(2%)| 3 0 2 1620 196 ENST00000308108.9 ENST00000517710.5 upstream downstream none GCG___AGGTTTTATACACCTGAAAGAAGAGAATGTCAAGACGAAG___CCGTTTACAAGCTAAGCAGCAGCCCCAGCCCAGCCAGACGGAATCCCCCCAAGAAGCC...AAAGAAGAGAGGAGGTCACCAAGAAACATCAGTATGAAATTAGG___AATTGTTGGCCACCTGTATTATCTGGGGGGATCAGTCCTTGCATTATCATTGAAACACCTCACAAAGAAATAGGAACAAGTGATTTCTCCAGATTTACAAATTACAGATTTAAAAATCTTTTTATTAATCC...AAGGAGAGCAGATATGTTCATGACAAACATTTTGAAGTTCTGCATTCTGACTTGGAACCACAGATGAGGTCCATACTTCTAGACTGGCTTTTAGAG|GAGCCTGATTCCCCACGTGTCACATTGGTCCGTGACGTTTCCCCACTAAGGGTGAGACCCATTACTGAGAACAAACCCCAGGAATCCCTTACATTCTCCTTCCCGTGCAGCCCCCACCTGATTGTTCTTGTGTGGATTCCAGAGCTGACTGCTGGATTGAGATGCTTATTTCCCC KESRYVHDKHFEVLHSDLEPQMRSILLDWLLE|epdsprvtlvrdvsplrvrpitenkpqesltfsfpcsphlivlvwipeltaglrclfp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14724 VPS18::ZFYVE19 ENSG00000104142.11::ENSG00000166140.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1452 TRUE 2582 TRUE 991 VPS18 ENSG00000104142.11 protein_coding + + chr15:40894450-40903975:+ chr15:40898998:+ chr15:41186648-41196173:+ chr15:41191196:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40812699:+ chr15:41099284-41107282:+ chr15:41104897:+ chr15:40899159,chr15:40899155 chr15:40812450,chr15:40812443 NA NA chr15:41191357,chr15:41191353 chr15:41104648,chr15:41104641 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none |zf-CCHC_3(100%) 94 82 216 413 410 ENST00000220509.10 ENST00000355341.8 downstream upstream duplicates(46),inconsistently_clipped(1),mismatches(29) CGGGCACCATGGCGTCCATCCTGGATGAGTACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGG___GGTATGTGAATGCCCAGCTGGAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTGTGCATGAGCCTGGGCAAGGATACACTGCTCCG___CATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGACGCAAAAGTTCACAAGATGTTCCTTGACCATACTG|CTGCCTCTCTCCAGAATGATCTCAACCAGGGTGGCCCAGGGAGCACTAATTCCAAGAGGCAGGCCAACTGGTCCTTGGAGGAGGAGAAGAGCAGACTGCTGGCTGAGGCAGCACTTGAGTTGCGGGAGGAGAACACGAGGCAGGAACGGATTCTGGCCCTGGCCAAGCGACTAGCCATGCTGCGGGGACAGGACCCCGAGAGAG___TGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGC MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHT|aASLQNDLNQGGPGSTNSKRQANWSLEEEKSRLLAEAALELREENTRQERILALAKRLAMLRGQDPERVTLQDYRLPDSDDDEDEETAIQRVLQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14725 VPS18::ZFYVE19 ENSG00000104142.11::ENSG00000166140.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1453 TRUE 2582 TRUE 991 VPS18 ENSG00000104142.11 protein_coding + + chr15:40894450-40903975:+ chr15:40898998:+ chr15:41186648-41196173:+ chr15:41191196:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40813338:+ chr15:41099284-41107282:+ chr15:41105536:+ chr15:40899159,chr15:40899155 chr15:40812450,chr15:40812443 NA NA chr15:41191357,chr15:41191353 chr15:41104648,chr15:41104641 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none |zf-CCHC_3(100%) 52 30 97 413 906 ENST00000220509.10 ENST00000355341.8 downstream upstream duplicates(11),mismatches(12) GGCCGGGCACCATGGCGTCCATCCTGGATGAGTACGAGAACTCGCTGTCCCGCTCGGCCGTCTTGCAGCCCGGCTGCCCTAGCGTGGGCATCCCCCACTCGG___GGTATGTGAATGCCCAGCTGGAGAAGGAAGTGCCCATCTTCACAAAGCAGCGCATTGACTTCACCCCTTCCGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTGTGCATGAGCCTGGGCAAGGATACACTGCTCCG___CATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGACGCAAAAGTTCACAAGATGTTCCTTGACCATACTG|TGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGCAG___CTCACTGAAGAAGCTTCCCTGGATGAGGCAAaTGGCTTTAACATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCG MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHT|vTLQDYRLPDSDDDEDEETAIQRVLQQLTEEASLDEAnGFNIPAEQASRPWTQPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14726 VPS18::ZFYVE19 ENSG00000104142.11::ENSG00000166140.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2582 TRUE 991 VPS18 ENSG00000104142.11 protein_coding + + chr15:40894450-40903975:+ chr15:40898998:+ chr15:41186648-41196173:+ chr15:41191196:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40813323:+ chr15:41099284-41107282:+ chr15:41105521:+ chr15:40899159,chr15:40899155 chr15:40812450,chr15:40812443 NA NA chr15:41191357,chr15:41191353 chr15:41104648,chr15:41104641 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none |zf-CCHC_3(100%) 0 1 97 413 906 ENST00000220509.10 ENST00000566407.5 downstream upstream duplicates(4),mismatches(11) CGAGCGCATTACCAGTCTTGTCGTCTCCAGCAATCAGCTGTGCATGAGCCTGGGCAAGGATACACTGCTCCG___CATTGACTTGGGCAAGGCAAATGAGCCCAACCACGTGGAGCTGGGACGTAAGGATGACGCAAAAGTTCACAAGATGTTCCTTGACCATACTG|GTCTCCCTCTTCAAGTGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGCAG___CTCACTGAAGAAGCTTCCCTGGATGAGGCAAaTGGCTTTAACATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCG ERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHT|glplqvtlqdyrlpdsdddedeetaiqrvlqqlteeasldeangfnipaeqasrpwtqpr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14735 BIRC6::ENSG00000254303 ENSG00000115760.16::ENSG00000254303.1 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32531551:+ chr2:32582091-32844638:+ chr2:32756618:+ ENSG00000254303 ENSG00000254303.1 lncRNA - + chr8:121954640-122127184:- chr8:122108505:+ chr8:122966879-123139423:- chr8:123120744:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Baculoviral_IAP_repeat-containing_protein_6__(100%),Inhibitor_of_Apoptosis_domain(100%)| BIR(100%),BIRC6(100%)| 40 26 88 539 120 ENST00000700518.1 unknown downstream upstream duplicates(16),mismatches(7) TAACAGACCCCAGTCTATCAAAAACAGATTCTTATAAAAGACTACACCCTGAAAAAG___ATCATGGAGACTTACTTGCTAGCTGTCCAGAAGATGAGGCTCTCACTCCAGGTGATGAATGCATGGATGGGATACTGGATGAATCTTTGCTTGAAACCTGTCCAATTCAGTCACCATTACAAGTTTTTGCAGGAATGGGTGGACTGGCTCTTATTGCTGAAAGACTACCCATGCTATATCCAGAAGTAATTCAACAG|ATCCTTGCCCAAGTTTTTGGAACATGGACTTTGGATGGAGATCTGGATGCAAGGACTTTAGAGTGGAATGAACCAGGGGATTCCACCTGAATTCATGTGAGAGAAGTGGGACTGGGAAGAAAGAGAAGGTGAACTGCAATGCAAGTTAAAAGGAAGCCTCAGAAATCCATGGGAAGCTCTGAAACTGGAGTGACTGTTCAGAGATAGTTTAAGTGGAAGTACAAGGCCCACTTATATTTCAGCATCAACCAGCCACTCTGTGAACAC TDPSLSKTDSYKRLHPEKDHGDLLASCPEDEALTPGDECMDGILDESLLETCPIQSPLQVFAGMGGLALIAERLPMLYPEVIQQ|ilaqvfgtwtldgdldartlewnepgdst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 14736 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39721403:+ chr17:37844167-37886679:+ chr17:37877656:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127251911:+ chr8:127568568-128431295:+ chr8:128264156:+ NA NA NA NA NA NA NA NA sense sense unknown intron intron translocation high none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(100%),Recep_L_domain(100%)| 34 32 83 625 243 unknown unknown downstream upstream duplicates(10),mismappers(83),mismatches(15) AGTGATCCTCCAGTTTTGGCCTCCCAAAATGTTGGGATCACAGGAGTGAGCCACCACTCCTGGCGATGAGCCAAGTCTTTTTTTTTTTTTTTTTTTTTTGATATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCA?TGACACGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCAAGCAATCCTCCTGTCTCAGCCCCCCAGTA|GCTGTGTTAATAGTTGTTAACTGTATTGTTTAGAGAAAAATGACAAGAAAAGGATGTCTGTGCGTATTCAGTACAAATGCAACCACCATTTTTCCCTCAAATATTTTGACTGTGGCTGGTTGAATTCGTGAATGTGGAACCCACAGATAAGGAGGGCCCACTGTATTTTGCTCAGCTAGCTTTCCTTCTCCTCCCTCCTTGCTGCTTAACCCTGAGGCAGTCTTTCTTCTCTCTTTATCCTCCAGGGCTAGGTGAGGGGCTCACAAGCTGAGTCACCATGCTGGAGTGCAACTCTCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14737 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39717481:+ chr17:37844167-37886679:+ chr17:37873734:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(92%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(33%),Recep_L_domain(100%)| 7 7 8 36758 26 ENST00000578199.5 ENST00000521586.2 downstream upstream duplicates(1),mismatches(1) CTCAGCATGGCCGGACAGCCTGCCTGACCTCAGCGTCTTCCAGAACCTGCAAGTAATCCGGGGACGAATTCTGCACAA___TGGCGCCTACTCGCTGACCCTGC...TCCCCCTCTGTTTCTGAAATCTCAGAACTCTTCCTCTCCCTACATCGGCCCCACCTGTCCCCACCCCTCCAGCCCACAGCCATGCCCACAGCCAGTTCCCT...CAGTTCCTTCGGGGCCAGGAGTGCGTGGAGGAATGCCGAGTACTGCAGGG___GCTCCCCAGGGAGTATGTGAATGCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTTGGACCG___GAGGCTGACCAGTGTGTGGCCTGTGCCCACTATAAGGACCCTCCCTTCTGCGTGGCCCGCTGCCCCAGCGGTGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTCG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCC QFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNGSVTCFGPEADQCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHS|rclfskfnlkpecmetidavskvekgqsgsrgakrrrpaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14738 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39717480:+ chr17:37844167-37886679:+ chr17:37873733:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(92%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(33%),Recep_L_domain(100%)| 3 1 13 33259 18 ENST00000584601.5 ENST00000642795.1 downstream upstream duplicates(1),mismappers(1) CCAGGGAGTATGTGAATGCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTTGGACCG___GAGGCTGACCAGTGTGTGGCCTGTGCCCACTATAAGGACCCTCCCTTCTGCGTGGCCCGCTGCCCCAGCGGTGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTC|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGGTG REYVNARHCLPCHPECQPQNGSVTCFGPEADQCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHs|hsqpneggggkggeeekkkkererkrkmirvemwpga NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14739 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39719834:+ chr17:37844167-37886679:+ chr17:37876087:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(100%),Recep_L_domain(100%)| 1 0 14 40636 18 ENST00000584601.5 ENST00000642795.1 downstream upstream duplicates(2),mismappers(1) GCCGAGTACTGCAGGG___GCTCCCCAGGGAGTATGTGAATGCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTT...CTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTC___CTGTGTGGACCTGGATGACAAGGGCTGCCCCGCCGAGCAGAGAGCCAG|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGG LSYMPIWKFPDEEGACQPCPINCTHSCVDLDDKGCPAEQRAr|hsqpneggggkggeeekkkkererkrkmirvemwpga NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14740 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39717480:+ chr17:37844167-37886679:+ chr17:37873733:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(92%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(33%),Recep_L_domain(100%)| 1 0 10 33259 18 ENST00000584601.5 ENST00000644021.1 downstream upstream duplicates(1),low_entropy(1),mismappers(1) CCAGGGAGTATGTGAATGCCAGGCACTGTTTGCCGTGCCACCCTGAGTGTCAGCCCCAGAATGGCTCAGTGACCTGTTTTGGACCG___GAGGCTGACCAGTGTGTGGCCTGTGCCCACTATAAGGACCCTCCCTTCTGCGTGGCCCGCTGCCCCAGCGGTGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTC|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCC REYVNARHCLPCHPECQPQNGSVTCFGPEADQCVACAHYKDPPFCVARCPSGVKPDLSYMPIWKFPDEEGACQPCPINCTHs|vslgcsdwstvvrsrltetsaswlqafllpqppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14741 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39719834:+ chr17:37844167-37886679:+ chr17:37876087:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(100%),Recep_L_domain(100%)| 1 0 10 40636 18 ENST00000584601.5 ENST00000644021.1 downstream upstream duplicates(1),mismappers(1) TGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAGGAGGGCGCATGCCAGCCTTGCCCCATCAACTGCACCCACTC___CTGTGTGGACCTGGATGACAAGGGCTGCCCCGCCGAGCAGAGAGCCAG|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCC VKPDLSYMPIWKFPDEEGACQPCPINCTHSCVDLDDKGCPAEQRAr|vslgcsdwstvvrsrltetsaswlqafllpqppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14742 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2584 TRUE 992 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39719835:+ chr17:37844167-37886679:+ chr17:37876088:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense out-of-frame exon/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(100%),Recep_L_domain(100%)| 1 0 8 40636 26 ENST00000584601.5 ENST00000521586.2 downstream upstream duplicates(1) CCTGTGCCCACTATAAGGACCCTCCCTTCTGCGTGGCCCGCTGCCCCAGCGGTGTGAAACCTGACCTCTCCTACATGCCCATCTGGAAGTTTCCAGATGAG...TCAACTGCACCCACTC___CTGTGTGGACCTGGATGACAAGGGCTGCCCCGCCGAGCAGAGAGCCAGG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTT NCTHSCVDLDDKGCPAEQRAr|rclfskfnlkpecmetidavskvekgqsgsrgakrrrpaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14744 NTAQ1::ENSG00000254394 ENSG00000156795.8::ENSG00000254394.2 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NTAQ1 ENSG00000156795.8 protein_coding + + chr8:123416726-123470028:+ chr8:123430033:+ chr8:124428966-124482268:+ chr8:124442273:+ ENSG00000254394 ENSG00000254394.2 lncRNA + - chr8:82033533-82961926:+ chr8:82441044:- chr8:82945768-83874161:+ chr8:83353279:- chr8:123430310,chr8:123430311 chr8:82441576,chr8:82441577 NA NA chr8:124442550,chr8:124442551 chr8:83353811,chr8:83353812 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none N-terminal_glutamine_amidase(28%)| Nt_Gln_amidase(26%)| 31 27 68 619 96 ENST00000287387.7 unknown downstream downstream duplicates(10),low_entropy(1),mismatches(6) GCCCGGGCCCTGGCCCAGCTAGCCGGCCATGGAAGGTAATGGCCCCGCTGCTGTCCACTACCAGCCGGCCAGCCCCCCGCGGGACGCCTGCGTCTACAGCAGCTGCTACTG___TGAAGAAAATgTTTGGAAGCTCTGTGAATACATCAAAAACCATGACCAGTATCCTTTAGAAGAATGTTATGCTGTCTTCATATCTAATGAGAGGAAGATG___ATACCTATCTGGAAACAACAGGCGAGACCTGGAGATGGACCTGTGATCTGG|CCAACTGTCTGGAGATGCAGTTTTCCTTTGTCTCTCTGAAGACTTCCCGTGAGATCAAGCACCAGATAAGCTTGTTCCCTAGCTGTGACCAGTTCAATAATGCATGCCTTTAAGTATTTGCTCTGTTTCTTTCCTGATTTACTCAATAATTATCTTATCTCCAGCTTCGCTGGTCTTGTGCAAGCTAATAAATATTAACATCTAAGTTTTGGCATGGTCTGAAAAGTTTACCAAACAAGTTAGATGTCTTTTACT MEGNGPAAVHYQPASPPRDACVYSSCYCEENvWKLCEYIKNHDQYPLEECYAVFISNERKMIPIWKQQARPGDGPVIW|ptvwrcsfplsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14746 VAV2::TRUB2 ENSG00000160293.17::ENSG00000167112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1455 TRUE 2585 TRUE 993 VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133939103:- chr9:136627016-136857726:- chr9:136804225:- TRUB2 ENSG00000167112.10 protein_coding - - chr9:128305159-128322447:- chr9:128313889:- chr9:131067438-131084726:- chr9:131076168:- chr9:133867684,chr9:133867688 chr9:128316321,chr9:128316322 NA NA chr9:136732806,chr9:136732810 chr9:131078600,chr9:131078601 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none CAMSAP_CH_domain(100%)|TruB_family_pseudouridylate_synthase_(N_terminal_domain)(73%) CAMSAP_CH(100%),CH(40%)|Swi5(100%),TruB_N(54%) 23 24 68 459 604 ENST00000371851.1 ENST00000372890.6 upstream downstream duplicates(9),mismatches(2) GCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG___TTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAG|GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATG___ACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGTGAT___GTACTCCAACCTCGACCTGA RWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGK|DYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14747 VAV2::TRUB2 ENSG00000160293.17::ENSG00000167112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2585 TRUE 993 VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133992075:- chr9:136627016-136857726:- chr9:136857197:- TRUB2 ENSG00000167112.10 protein_coding - - chr9:128305159-128322447:- chr9:128313889:- chr9:131067438-131084726:- chr9:131076168:- chr9:133867684,chr9:133867688 chr9:128316321,chr9:128316322 NA NA chr9:136732806,chr9:136732810 chr9:131078600,chr9:131078601 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none CAMSAP_CH_domain(58%)|TruB_family_pseudouridylate_synthase_(N_terminal_domain)(73%) CAMSAP_CH(0%),CH(0%)|Swi5(100%),TruB_N(54%) 0 2 15 601 604 ENST00000371851.1 ENST00000372890.6 upstream downstream none TCGAGCACTGCCCTGAGCCGGTCGGGCCCGCGGGCGCCATGGAGCAGTGGCGGCAGTGCGGCCGCTGGCTCATCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG|GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATG___ACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGT MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQ|DYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKAL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14748 VAV2::TRUB2 ENSG00000160293.17::ENSG00000167112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2585 TRUE 993 VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133939103:- chr9:136627016-136857726:- chr9:136804225:- TRUB2 ENSG00000167112.10 protein_coding - - chr9:128305159-128322447:- chr9:128315628:- chr9:131067438-131084726:- chr9:131077907:- chr9:133867684,chr9:133867688 chr9:128316321,chr9:128316322 NA NA chr9:136732806,chr9:136732810 chr9:131078600,chr9:131078601 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none CAMSAP_CH_domain(100%)|TruB_family_pseudouridylate_synthase_(N_terminal_domain)(87%) CAMSAP_CH(100%),CH(40%)|Swi5(100%),TruB_N(78%) 1 0 74 459 509 ENST00000371851.1 ENST00000372890.6 upstream downstream duplicates(7),mismatches(1) CCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG___TTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAG|TGCTCGGCGTGGGACATGGATGCAGGCTCCTCACCGATATGTACAATGCTCATCTTACCAAG___GATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATG___ACCACGTGACCAGAG PGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGK|csawdmdagsspictmlilpritqcvaswaklqmtsvrtggw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14749 VAV2::TRUB2 ENSG00000160293.17::ENSG00000167112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2585 TRUE 993 VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133939103:- chr9:136627016-136857726:- chr9:136804225:- TRUB2 ENSG00000167112.10 protein_coding - - chr9:128305159-128322447:- chr9:128311601:- chr9:131067438-131084726:- chr9:131073880:- chr9:133867684,chr9:133867688 chr9:128316321,chr9:128316322 NA NA chr9:136732806,chr9:136732810 chr9:131078600,chr9:131078601 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none CAMSAP_CH_domain(100%)|TruB_family_pseudouridylate_synthase_(N_terminal_domain)(54%) CAMSAP_CH(100%),CH(40%)|Swi5(92%),TruB_N(23%) 1 0 24 459 700 ENST00000371851.1 ENST00000372890.6 upstream downstream duplicates(2) CCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG___TTTCTGTGTTTGAAGAACATACGCACCTTCCTGAAAGTCTGCCACGATAAATTTGGATTAAGGAACAGCGAGCTGTTTGACCCCTTTGACCTCTTCGATGTGCGAGACTTTGGAAAG|ACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGTGAT___GTACTCCAACCTCGACCTGAAGACCCAGGAGGCCTATGAGATGGCCGTGAGAGGCCTGATCCGGCCCATGAACAAGTCCC PGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGK|tt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14751 ZNF251::TSHZ2 ENSG00000198169.9::ENSG00000182463.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF251 ENSG00000198169.9 protein_coding - - chr8:144720907-144756417:- chr8:144753683:- chr8:145946292-145981802:- chr8:145979068:- TSHZ2 ENSG00000182463.17 protein_coding + + chr20:52972358-53495330:+ chr20:53487144:+ chr20:51588897-52111869:+ chr20:52103683:+ chr8:144751625,chr8:144751632 chr20:53337937,chr20:53337930 NA NA chr8:145977010,chr8:145977017 chr20:51954476,chr20:51954469 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none KRAB_box(100%)| KRAB(100%)| 30 20 43 1206 151 ENST00000292562.12 ENST00000371497.10 upstream upstream duplicates(4),mismatches(16) CTCAGGCGGAGGGGCGGCAGCTGGGCCCCCAGCAGCGGGCGCTCTACCGGGATGTGATGCTGGAGAACTATGGGAACGTGGCCTCTCTGG___GATTCCCTGTCCCTAAGCCGGAGTTGATCTCCCAGCTGGAGCAGGGGAAGGAACTTTGGGTCCTGAATCTTCTGGGAGCTGAGGAACCAGATATCTTGAAAAGCTGCCAGAAAG|GACGAATGCCTTAGTTTCCACTTTCCAGCCTGGATCCCCTCACACTGAACCCTTCTTCGTTGCACCATCCTGCTTCTGACATTGAACTCATTGAACTCCTCCTGACACCCTGGCTCTGAGAAGACTGCCAAAAAAAAAAAAAAAAAAAAATCACCCCAGCCATTTCTCTTCATCCTCACTAACAATTTGGTAATGAAGTATTGATTTCCACTTCTCTGCTTATGGGCGGTATTAGATTTTCATTGATAAATTGC QAEGRQLGPQQRALYRDVMLENYGNVASLGFPVPKPELISQLEQGKELWVLNLLGAEEPDILKSCQK|grmp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14753 SLCO4A1::TCEA2 ENSG00000101187.16::ENSG00000171703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2586 TRUE 994 SLCO4A1 ENSG00000101187.16 protein_coding + + chr20:62642503-62685785:+ chr20:62658767:+ chr20:61273855-61317137:+ chr20:61290119:+ TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64062430:+ chr20:62681189-62703700:+ chr20:62693783:+ chr20:62660246,chr20:62660245 chr20:64050288,chr20:64050282 NA NA chr20:61291598,chr20:61291597 chr20:62681641,chr20:62681635 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Organic_Anion_Transporter_Polypeptide_(OATP)_family(28%)|TFIIS_helical_bundle-like_domain(100%),Transcription_factor_S-II_(TFIIS)(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%) MFS_1(20%),OATP(16%)|Med26(100%),TFIIS_C(100%),TFIIS_M(100%) 22 24 26 61 78 ENST00000217159.6 ENST00000475792.1 downstream upstream duplicates(5),low_entropy(1),mismatches(2) GCTGGCCGCTATGAGGTGGAGTTGGACGCGGGTGTCAGGACGTGCCCTGCCAACCCCGGCGCGGTGTGTGCGGACAGCACCTCGGGCCTGTCCCGCTACCAGCTGGTCTTCATGCTGGGCCAGTTCCTGCATGGCGTGGGTGCCACACCCCTCTACACGCTGGGCGTCACCTACCTGGATGAGAACGTCAAGTCCAGCTGCTCGCCCGTCTACATTG___CCATCTTCTACACAGCGGCCATCCTGGGCCCAGCTGCCGGCTACCTGATTGGAGGTGCCCTGCTGAATATCTACACGGAAATGGGCCGACG|GCATGTGATGTGAATCAGCTGACATCATCTTGACGGGAGCCCTGTGAGGCGGACACTTAACTCCAGTTTCACAGGTGGGGAGACTGAGACACAGTGGTCAACGTGCAGAGCCCAGAATCTGCTCCCTGGTAGCTGACTTTGCAGGCAGGGGCCTTGCCCACGCAGCCTCGGCAGAGGCCCCCGCACTTCGCGAACCCCAGCAATGGCCCCTTCCAGACGCCACGTCCAGCTACCGCGCGCTC AGRYEVELDAGVRTCPANPGAVCADSTSGLSRYQLVFMLGQFLHGVGATPLYTLGVTYLDENVKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRr|hvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14754 SLCO4A1::TCEA2 ENSG00000101187.16::ENSG00000171703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2586 TRUE 994 SLCO4A1 ENSG00000101187.16 protein_coding + + chr20:62642503-62685785:+ chr20:62658767:+ chr20:61273855-61317137:+ chr20:61290119:+ TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64066476:+ chr20:62681189-62703700:+ chr20:62697829:+ chr20:62660246,chr20:62660245 chr20:64050288,chr20:64050282 NA NA chr20:61291598,chr20:61291597 chr20:62681641,chr20:62681635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Organic_Anion_Transporter_Polypeptide_(OATP)_family(28%)|TFIIS_helical_bundle-like_domain(100%),Transcription_factor_S-II_(TFIIS)(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%) MFS_1(20%),OATP(16%)|Med26(100%),TFIIS_C(100%),TFIIS_M(100%) 1 1 2 61 824 ENST00000217159.6 ENST00000395053.7 downstream upstream duplicates(1) CTCGGGCCTGTCCCGCTACCAGCTGGTCTTCATGCTGGGCCAGTTCCTGCATGGCGTGGGTGCCACACCCCTCTACACGCTGGGCGTCACCTACCTGGAT...ACGTCAAGTCCAGCTGCTCGCCCGTCTACATTG___CCATCTTCTACACAGCGGCCATCCTGGGCCCAGCTGCCGGCTACCTGATTGGAGGTGCCCTGCTGAATATCTACACGGAAATGGGCCGACG|GAGGGAGCCATGGATTTGCTGCGGGAGCTGAAGGCCATGCCTATCACGCTGCACCTGCTCCAG___TCCACCCGAGTCGGGATGTCTGTCAACGCCCTTCGGAAGCAGAGCTCGGATGAGGAGGTCATTGCACTGGCCAAGTCTCTCATCAAGTCCTGG VKSSCSPVYIAIFYTAAILGPAAGYLIGGALLNIYTEMGRr|repwiccgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14755 SLCO4A1::TCEA2 ENSG00000101187.16::ENSG00000171703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2586 TRUE 994 SLCO4A1 ENSG00000101187.16 protein_coding + + chr20:62642503-62685785:+ chr20:62642553:+ chr20:61273855-61317137:+ chr20:61273905:+ TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64062430:+ chr20:62681189-62703700:+ chr20:62693783:+ chr20:62660246,chr20:62660245 chr20:64050288,chr20:64050282 NA NA chr20:61291598,chr20:61291597 chr20:62681641,chr20:62681635 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion medium none |TFIIS_helical_bundle-like_domain(100%),Transcription_factor_S-II_(TFIIS)(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%) |Med26(100%),TFIIS_C(100%),TFIIS_M(100%) 0 3 0 52 78 ENST00000217159.6 ENST00000361317.6 downstream upstream none GCGGCGCGTGGCTGCCGGGGAGGCCAGAGCGTGGAGCGCTGCGCGGCGCGGCGGCCGGGCCCTCGAGACGGGGACG|GCATGTGATGTGAATCAGCTGACATCATCTTGACGGGAGCCCTGTGAGGCGGACACTTAACTCCAGTTTCACAG___GAGGGAGCCATGGATTTGCT...AAGTCCTGGAAGAAGCTCCTGG___CCGCAAGAGGCCGGAGCTGCCCAGGGCACCGTCGACTCCGAGGATCACCACATTTCCTCCGGTGCCTGTCACCTGTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14756 SLCO4A1::TCEA2 ENSG00000101187.16::ENSG00000171703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2586 TRUE 994 SLCO4A1 ENSG00000101187.16 protein_coding + + chr20:62642503-62685785:+ chr20:62642553:+ chr20:61273855-61317137:+ chr20:61273905:+ TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64066476:+ chr20:62681189-62703700:+ chr20:62697829:+ chr20:62660246,chr20:62660245 chr20:64050288,chr20:64050282 NA NA chr20:61291598,chr20:61291597 chr20:62681641,chr20:62681635 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |TFIIS_helical_bundle-like_domain(100%),Transcription_factor_S-II_(TFIIS)(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%) |Med26(100%),TFIIS_C(100%),TFIIS_M(100%) 0 2 0 52 824 ENST00000217159.6 ENST00000395053.7 downstream upstream none GCGTGGAGCGCTGCGCGGCGCGGCGGCCGGGCCCTCGAGACGGGGACG|GAGGGAGCCATGGATTTGCTGCGGGAGCTGAAGGCCATGCCTATCACGCTGCACCTGCTCCAG___TCCAC...GTCATTGCACTGGCCAAGTCTCTCATCAAGTCCTGGAAGAAGCTCCTGG___ATGCTTCCGATGCCAAAGCCAGGGAGCGGGGGAGGGGCATGCCTCTGCCCAC...GGGATGCCTCAGAGGCCCCGGATCCCAG___CCGCAAGAGGCCGGAGCTGCCCAGGGCACCGTCGACTCCGAGGATCACCACATTTCCTCCGGTGCCTGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14757 ZNF251::ENSG00000271774 ENSG00000198169.9::ENSG00000271774.1 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF251 ENSG00000198169.9 protein_coding - - chr8:144720907-144756417:- chr8:144753683:- chr8:145946292-145981802:- chr8:145979068:- ENSG00000271774 ENSG00000271774.1 lncRNA - + chr20:53255979-53487274:- chr20:53350668:+ chr20:51872518-52103813:- chr20:51967207:+ chr8:144751625,chr8:144751632 chr20:53337937,chr20:53337930 NA NA chr8:145977010,chr8:145977017 chr20:51954476,chr20:51954469 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none KRAB_box(100%)| KRAB(100%)| 3 2 65 1206 8 ENST00000292562.12 unknown upstream upstream duplicates(7),mismatches(3) CAGCTGGGCCCCCAGCAGCGGGCGCTCTACCGGGATGTGATGCTGGAGAACTATGGGAACGTGGCCTCTCTGG___GATTCCCTGTCCCTAAGCCGGAGTTGATCTCCCAGCTGGAGCAGGGGAAGGAACTTTGGGTCCTGAATCTTCTGGGAGCTGAGGAACCAGATATCTTGAAAAGCTGCCAGAAAG|CACCAAAAGAAGTCCCCAGCACCTTACAGGATTGATATTGAGAGCTTTTACAGTGTTTAAAG___GAAGAAGCAAAGAAGGGGATATTTGCATTTGATCACCAAATTGGACGAGACTAACTTTCATCCGCATCTGATCTGCC QLGPQQRALYRDVMLENYGNVASLGFPVPKPELISQLEQGKELWVLNLLGAEEPDILKSCQK|apkevpstlqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14758 SYT7::CYB5R2 ENSG00000011347.10::ENSG00000166394.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYT7 ENSG00000011347.10 protein_coding - - chr11:61513714-61581148:- chr11:61580790:- chr11:61281186-61348620:- chr11:61348262:- CYB5R2 ENSG00000166394.15 protein_coding - - chr11:7665100-7677222:- chr11:7674493:- chr11:7686331-7698453:- chr11:7695724:- chr11:61567678,chr11:61567686 chr11:7676394,chr11:7676399 NA NA chr11:61335150,chr11:61335158 chr11:7697625,chr11:7697630 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Oxidoreductase_FAD-binding_domain(100%),Oxidoreductase_NAD-binding_domain_(100%) |FAD_binding_6(100%),NAD_binding_1(100%),NAD_binding_6(100%) 7 55 4 49 143 ENST00000539008.6 ENST00000524608.5 upstream downstream duplicates(3),low_entropy(1),mismatches(7) CGGCGGCGGAGCAGCGCGCGGCCGCGGGCGGCTCTGAGGAGCCCGGAGGGAACCGGCGACGAGGGGACCATGTACCGGGACCCGGAGGCGGCCAGCCCAG|GTCCTGAGGCAAGAATTTGCCTTTGCCTGTAATCAAGGGCGAGCCGGGCAGCCAAGGTTCCGAAACGCACCGTGAAGACCCTCTAACTGTGCCTACTATTCTGCTCCCCTCCGATCGGCGCGGGGCTCTTGTCCTTCCTCTCTCCACCCAGCGAATGAATGAACGCAGGAGCGCTCGGAGTACACGTCTTCAACTCGGCGACGCCCCTGCTTCGGCCCCACCCCGCAAACACCCGCCCCGG MYRDPEAASP|gpeariclcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14761 NDUFA4::ENSG00000230333 ENSG00000189043.10::ENSG00000230333.6 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NDUFA4 ENSG00000189043.10 protein_coding - - chr7:10931943-10940153:- chr7:10938090:- chr7:10971570-10979780:- chr7:10977717:- ENSG00000230333 ENSG00000230333.6 lncRNA + - chr7:11180902-11520175:+ chr7:11206918:- chr7:11220529-11559802:+ chr7:11246545:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none NADH-ubiquinone_reductase_complex_1_MLRQ_subunit(79%)| B12D(30%)| 23 5 26 5749 20 ENST00000339600.6 unknown upstream downstream duplicates(3),inconsistently_clipped(1),mismatches(8) ATAATTTTTAGCTTAGGGCCTGGTGGCTAGGTCGGTTCTCTCCTTTCCAGTCGGAGACCTCTGCCGCAAACATGCTCCGCCAGATCATCGGTCAGGCCAAGAAGCATCCGAGC___TTGATCCCCCTCTTTGTATTTATTGGAACTGGAGCTACTGGAGCAACACTGTATCTCTTGCGTCTGGCATTGTTCAATCCAGATGTTTG___TTGGGACAGAAATAACCCAGAGCCCTGGAACAAACTGGGTCCCAATGATCAATACAAG|GGAAGTTTTTATACAATTCAGTGATGAATGAATCTGAGAAACACAGAAAAAG___GGAATAGGAGCCAGCCTTCCTGTTTACGAACTGCACCTGATGTGACTCGGCAGGAAACTTCCACCAAAACATACATATTCTCCA MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDRNNPEPWNKLGPNDQYK|gsfytiq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14762 ARFRP1::SLCO4A1 ENSG00000101246.20::ENSG00000101187.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARFRP1 ENSG00000101246.20 protein_coding - - chr20:63698642-63708025:- chr20:63701830:- chr20:62329995-62339377:- chr20:62333182:- SLCO4A1 ENSG00000101187.16 protein_coding + - chr20:62642503-62685785:+ chr20:62661856:- chr20:61273855-61317137:+ chr20:61293208:- chr20:63701163,chr20:63701160,chr20:63701166,chr20:63701156,chr20:63701154,chr20:63701152,chr20:63701151,chr20:63701150,chr20:63701149,chr20:63701146,chr20:63701145,chr20:63701144,chr20:63701142,chr20:63701140,chr20:63701155,chr20:63701137,chr20:63701136,chr20:63701135,chr20:63701138,chr20:63701133,chr20:63701131,chr20:63701132,chr20:63701148,chr20:63701125,chr20:63701141,chr20:63701122,chr20:63701121,chr20:63701120,chr20:63701167,chr20:63701116,chr20:63701130,chr20:63701113,chr20:63701111,chr20:63701110,chr20:63701108,chr20:63701115,chr20:63701171,chr20:63701168 chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292,chr20:62671292 NA NA chr20:62332515,chr20:62332512,chr20:62332518,chr20:62332508,chr20:62332506,chr20:62332504,chr20:62332503,chr20:62332502,chr20:62332501,chr20:62332498,chr20:62332497,chr20:62332496,chr20:62332494,chr20:62332492,chr20:62332507,chr20:62332489,chr20:62332488,chr20:62332487,chr20:62332490,chr20:62332485,chr20:62332483,chr20:62332484,chr20:62332500,chr20:62332477,chr20:62332493,chr20:62332474,chr20:62332473,chr20:62332472,chr20:62332519,chr20:62332468,chr20:62332482,chr20:62332465,chr20:62332463,chr20:62332462,chr20:62332460,chr20:62332467,chr20:62332523,chr20:62332520 chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644,chr20:61302644 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none ADP-ribosylation_factor_family(73%)| Arf(79%),Gtr1_RagA(100%),MMR_HSR1(100%),Ras(79%),Roc(100%),SRPRB(81%)| 10 4 34 2863 104 ENST00000622789.5 unknown upstream downstream duplicates(6),mismatches(6),multimappers(1) CTGGACAATGCTGGGAAGACG___ACCTTCCTGGAGCAGTCGAAAACCCGATTTAACAAGAACTACAAGGGGATGAGTCTATCCAAAATCACCACCACCGTGGGCCTAAACA___TCG...CTGGGACTTAGGAGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAG___TATTATGCGGAGTGTCACGGCGTCATCTACGTCATTGACTCCACCGACGAGGAGAGGCTGGCTGAGTCCAAGCAGGCGTTTG___AGAAGGTGGTGACCAGCGAGGCGCTGTGCGGTGTCCCCGTCTTGGTGCTGGCCAACAAGCAGGATGTGGAG|GACCCCACCGGCTCAGGGCCCt[aga]GGGTTCACCCTAGCAGTGCAGCAAGACAGCAAAGCAAGGCCGGACCACACTCAGCAGAAAGGGAAGGCAGCCAAGGCAGACGGCAAAGCAAGCAACCTCCCCAGAGGGT WDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVE|dptgsgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14764 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1456 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 6 16 22 934 162 ENST00000520635.5 ENST00000659326.1 upstream upstream duplicates(2),mismatches(1),multimappers(1) GCTGGGACGTCGGCTGGCCGGCGCCACCCGGCCCTCTGGGAGTTGAGCGAGAGCAGAGAAAAGTTGAAAAGACCGACAAAGACTGTGGGAAGTTGGCTTTTATCCACACTAGGGACGGTCCCAGGAACGAGGAACTAGTTTGTGAATGGCTCAAAGAAAAGCAAACCGATGTCCAGGGGTCTTGTGCAGGACCTGAAAGT|AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG___AGTGTGGGCACCCTGGCTTCAAGCTCACGAGAAACCAGGTCGGGATTTAAACAATGTTGGGTTAAAGCAAAGTTTCATAAAGACAGAATCAAGAAAAAAAGAAAGAGAAACCAATCTAAGTGCCATCCTCCCTGAGTTGCATCTTACCTGAGTCTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14765 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1457 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127983904:+ chr8:128806772-129199347:+ chr8:128996150:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 1 5 28 934 47 ENST00000520635.5 ENST00000660631.1 upstream upstream multimappers(1) GCTGGGACGTCGGCTGGCCGGCGCCACCCGGCCCTCTGGGAGTTGAGCGAGAGCAGAGAAAAGTTGAAAAGACCGACAAAGACTGTGGGAAGTTGGCTTTTATCCACACTAGGGACGGTCCCAGGAACGAGGAACTAGTTTGTGAATGGCTCAAAGAAAAGCAAACCGATGTCCAGGGGTCTTGTGCAGGACCTGAAAGT|AGTCTCACTCTGTGGTCCAGGCTGAAGTACAGTGGCATGATCCCAGGTCACTGCAACCCCCACCTCCCGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGTATTACAGGCGTGTGCCACAAAGCCTGGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGTTGGTCTCGAACTCCTGACCTCAAGTGATCCACTCACTTTGGCCTTTCAACGTGCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14766 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1458 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127982360:+ chr8:128806772-129199347:+ chr8:128994606:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 2 29 934 10 ENST00000520635.5 ENST00000670626.1 upstream upstream multimappers(1) GCTGGGACGTCGGCTGGCCGGCGCCACCCGGCCCTCTGGGAGTTGAGCGAGAGCAGAGAAAAGTTGAAAAGACCGACAAAGACTGTGGGAAGTTGGCTTTTATCCACACTAGGGACGGTCCCAGGAACGAGGAACTAGTTTGTGAATGGCTCAAAGAAAAGCAAACCGATGTCCAGGGGTCTTGTGCAGGACCTGAAAGT|TCTCTTCACCCTCTGAAAACAAGAGGATGTGTAGCATAGTGAGCAACAGCTGTGTGCCGGGGACTCAGCATTAAGTAGCATGGGATTACTCATGACTTCGCACTCAT...CCGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGTATTACAGGCGTGTGCCACAAAGCCTGGCTAAGTTTTGTATTTTTAGTAGAGACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14767 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732753:- chr8:82613569-82645138:- chr8:82644988:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127983904:+ chr8:128806772-129199347:+ chr8:128996150:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 0 1 5 4371 47 ENST00000523361.5 ENST00000660631.1 upstream upstream none CCAAGGGAAAGGCTAGAGGCAGATGGGCTCCCGCCTGTGGGCCAGACCCCAGCCTACCTCGCTTATTCTGCGTGCCGTGCTTCTTGGCCAGGGCGATTTCTCTCTGGATTCGATTTTCCAG|AGTCTCACTCTGTGGTCCAGGCTGAAGTACAGTGGCATGATCCCAGGTCACTGCAACCCCCACCTCCCGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGTATTACAGGCGTGTGCCACAAAGCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14768 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732753:- chr8:82613569-82645138:- chr8:82644988:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 1 4 4371 162 ENST00000523361.5 ENST00000656880.1 upstream upstream duplicates(1) GGGAAAGGCTAGAGGCAGATGGGCTCCCGCCTGTGGGCCAGACCCCAGCCTACCTCGCTTATTCTGCGTGCCGTGCTTCTTGGCCAGGGCGATTTCTCTCTGGATTCGATTTTCCAG|AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG___AGTGTGGGCACCCTGGCTTCAAGCTCACGAGAAACCAGGTCGGGATTTAAACAATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14769 NDUFAF6::NCOR1 ENSG00000156170.14::ENSG00000141027.23 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1459 TRUE 2589 TRUE 996 NDUFAF6 ENSG00000156170.14 protein_coding + + chr8:94895533-95116455:+ chr8:95075752:+ chr8:95907761-96128683:+ chr8:96087980:+ NCOR1 ENSG00000141027.23 protein_coding - - chr17:16029065-16218185:- chr17:16075702:- chr17:15932379-16121499:- chr17:15979016:- chr8:95080464,chr8:95080494,chr8:95080650,chr8:95080670,chr8:95080696,chr8:95080116,chr8:95080157,chr8:95080304,chr8:95080345,chr8:95080385,chr8:95080426 chr17:16077913,chr17:16077914,chr17:16077913,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077913 NA NA chr8:96092692,chr8:96092722,chr8:96092878,chr8:96092898,chr8:96092924,chr8:96092344,chr8:96092385,chr8:96092532,chr8:96092573,chr8:96092613,chr8:96092654 chr17:15981227,chr17:15981228,chr17:15981227,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981227 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none Squalene/phytoene_synthase(100%)| DOR(100%),SQS_PSY(100%)| 9 16 19 93 246 ENST00000523184.5 ENST00000704745.1 downstream downstream duplicates(4),mismappers(1) ATATTTGTATGCTG___CATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT___GAAATTAAGGATGCAGACACTCAGGGCGTGTGTCTTGCACAGCCAGCCAGCCTGGGAAAATGAAGCCAACTGGGAGAGAGATTTGAAGGACTCTGGTTCTAGGCATGCGCACTTCTCCAG|GGCACCCCGGCTCTGCCCCAGACTGGCATACCAACAGAGGCTTTGGTGAAGGGGTCCATTTCGAGAATGCCCATTGAAGACAGCAGTCCTGAGAAAGGCAGAGAGGAAGCTGCATCCAAAGGCCATGTTATTTATGAAGGCAAAAGTGGACATATCTTGTCATATGATA___ATATTAAGAATGCCCGAGAAGGGACTAGGAGTCCAAGAACAGCTCATGAAATCAGTTTAAAGAGAAGCTATGAATCAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3150a chr8:95072914-95072993:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 1 1 Yes breast epithelial TSG missense, frameshift, nonsense, other 14770 NDUFAF6::NCOR1 ENSG00000156170.14::ENSG00000141027.23 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2589 TRUE 996 NDUFAF6 ENSG00000156170.14 protein_coding + + chr8:94895533-95116455:+ chr8:95052230:+ chr8:95907761-96128683:+ chr8:96064458:+ NCOR1 ENSG00000141027.23 protein_coding - - chr17:16029065-16218185:- chr17:16075702:- chr17:15932379-16121499:- chr17:15979016:- chr8:95080464,chr8:95080494,chr8:95080650,chr8:95080670,chr8:95080696,chr8:95080116,chr8:95080157,chr8:95080304,chr8:95080345,chr8:95080385,chr8:95080426 chr17:16077913,chr17:16077914,chr17:16077913,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077913 NA NA chr8:96092692,chr8:96092722,chr8:96092878,chr8:96092898,chr8:96092924,chr8:96092344,chr8:96092385,chr8:96092532,chr8:96092573,chr8:96092613,chr8:96092654 chr17:15981227,chr17:15981228,chr17:15981227,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981227 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Squalene/phytoene_synthase(92%)| DOR(100%),SQS_PSY(82%)| 2 1 10 2480 246 ENST00000396113.5 ENST00000704745.1 downstream downstream none GTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT___GCTAGGTCCTTTCACAAAACTGTTCCTGTGAAAGCATTTCCTGCTTTTCTTCAGACG|GGCACCCCGGCTCTGCCCCAGACTGGCATACCAACAGAGGCTTTGGTGAAGGGGTCCATTTCGAGAATGCCCATTGAAGACAGCAGTCCTGAGAAAGGCAGAGAGGAAGCTGCATCCAAAGGCCATGTTATTTATGAAGGCAAAAGTGGACATATCTTGTCATATGATA___ATATTAAGAATGCCCGAGAAGGGACTAGGAGTCCAAGAACAGCTCATGAAATCAGTTTAAAGAGAAGCTATGAATCAGT VSQEDFLRRNQDKNVRDVIYDIASQAHLHLKHARSFHKTVPVKAFPAFLQT|GTPALPQTGIPTEALVKGSISRMPIEDSSPEKGREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEISLKRSYES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 1 1 Yes breast epithelial TSG missense, frameshift, nonsense, other 14771 NDUFAF6::NCOR1 ENSG00000156170.14::ENSG00000141027.23 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2589 TRUE 996 NDUFAF6 ENSG00000156170.14 protein_coding + + chr8:94895533-95116455:+ chr8:95048558:+ chr8:95907761-96128683:+ chr8:96060786:+ NCOR1 ENSG00000141027.23 protein_coding - - chr17:16029065-16218185:- chr17:16075702:- chr17:15932379-16121499:- chr17:15979016:- chr8:95080464,chr8:95080494,chr8:95080650,chr8:95080670,chr8:95080696,chr8:95080116,chr8:95080157,chr8:95080304,chr8:95080345,chr8:95080385,chr8:95080426 chr17:16077913,chr17:16077914,chr17:16077913,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077913 NA NA chr8:96092692,chr8:96092722,chr8:96092878,chr8:96092898,chr8:96092924,chr8:96092344,chr8:96092385,chr8:96092532,chr8:96092573,chr8:96092613,chr8:96092654 chr17:15981227,chr17:15981228,chr17:15981227,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981227 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Squalene/phytoene_synthase(84%)| DOR(100%),SQS_PSY(71%)| 0 1 7 3435 246 ENST00000396113.5 ENST00000704745.1 downstream downstream none CAACACCATATCATGGGAGCAGAAGAAAGGTGTTCCTTCCCATGGATATTTGTATGCTG___CATGGTGTTTCACAAGAGGACTTTCTACGGAGGAACCAAGATAAAAATGTGAGAGATGTAATATATGACATTGCCAGTCAAGCACACTTGCACCTAAAGCAT|GGCACCCCGGCTCTGCCCCAGACTGGCATACCAACAGAGGCTTTGGTGAAGGGGTCCATTTCGAGAATGCCCATTGAAGACAGCAGTCCTGAGAAAGGCAGAGAGGAAGCTGCATCCAAAGGCCATGTTATTTATGAAGGCAAAAGTGGACATATCTTGTCATATGATA___ATATTAAGAATGCCCGAGAAGGGACTAGGAGTCCAAGAACAGCTCATGAAATCAGTTTAAAGAGAAGCTATGAATCAGT TPYHGSRRKVFLPMDICMLHGVSQEDFLRRNQDKNVRDVIYDIASQAHLHLKH|GTPALPQTGIPTEALVKGSISRMPIEDSSPEKGREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEISLKRSYES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 1 1 Yes breast epithelial TSG missense, frameshift, nonsense, other 14773 TRAK1::FAM98A ENSG00000182606.17::ENSG00000119812.20 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRAK1 ENSG00000182606.17 protein_coding + + chr3:42013802-42225890:+ chr3:42087400:+ chr3:42055294-42267382:+ chr3:42128892:+ FAM98A ENSG00000119812.20 protein_coding - + chr2:33532744-33599347:- chr2:33584897:+ chr2:33757811-33824414:- chr2:33809964:+ chr3:42091926,chr3:42091925 chr2:33583476,chr2:33583472 NA NA chr3:42133418,chr3:42133417 chr2:33808543,chr2:33808539 NA NA sense antisense unknown CDS/splice-site CDS translocation/5'-5' high none none none 13 13 16 65 236 ENST00000673621.2 unknown downstream upstream duplicates(4),low_entropy(1),mismatches(2) ACTACCGGGGGCCATCTGCCCAACTGCCCCAGACTCTGGCAGTGGGGCCCCCGATGGCAGTGGGCACCTCCCCGTGAAACCTGCCAAGCTGGACGCCACAGCTCTGCACGACGACACTTTGGCCAACTCCGTGCCCCCTTCGGAGGCATGCAACCATGCAGTCCTAGCCTGCAGCCTGGGCATCCCTGAGGAACACTACATAAGCGAGGCTGTGGAAGATGCTCCCAGCTACAGAGGGTACCGGGATGCCTGCACCATTACTG|CCTCCTCCCTGGCCTGCACGACCACCTCGGCCTCCACGACCACCTCGCCCACCACGACCACCACCACGATCACCATGGTGCCCGCCATCTTGGTATCTATTGTCCTGCTGGTAGCCACCACCCTGGTATCCACTTCCTGTATATGAAGAAGATGTTTGGAAGCCACCATAACCTCCGCCTTGATAGCCACCACTGCTGTGGCCACCATGATAGCCACCTGGCTGGAAACCTGAATCTCGATAACCACCATCTTGGTAGCCACCTCCTCCACCACTCCCTCCATCTGTCCAGCCTCCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14774 STMN3::OSBPL2 ENSG00000197457.10::ENSG00000130703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1460 TRUE 2590 TRUE 997 STMN3 ENSG00000197457.10 protein_coding - - chr20:63639705-63657682:- chr20:63653327:- chr20:62271058-62289035:- chr20:62284680:- OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62289207:+ chr20:60806978-60871269:+ chr20:60864263:+ chr20:63644877 chr20:62288376 NA NA chr20:62276230 chr20:60863432 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Oxysterol-binding_protein_(23%) |Oxysterol_BP(15%) 0 36 4 51 643 ENST00000370053.3 ENST00000358053.3 upstream upstream mismatches(3) GCCGTCTGCAGCTCCGGCCGCCACTTGCGCCTCTCCAGCCTCCGCAGGCCCAACCGCCGCCAGCACCATGGCCAGCACCATTTCCG|ATGTATAATTTCACCAGTTTCACTGTGAGCCTCAACGAGCTGGAGACAGGCATGGAGAAGACCCTGCCACCCACGGACTGCCGCCTGCGCCCTGACATCCGCGGCATGGAGAATGGCAACATGG___ATCTGGCCAGCCAGGAGAAGGAGCGGCTGGAGGAGAAGCAGAGAGAAGCACGGAGGGAGCGGGCCAAGGAGGAGGCAGAGTGGCAGACGAG___GTG MASTIS|dv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14775 STMN3::OSBPL2 ENSG00000197457.10::ENSG00000130703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2590 TRUE 997 STMN3 ENSG00000197457.10 protein_coding - - chr20:63639705-63657682:- chr20:63653327:- chr20:62271058-62289035:- chr20:62284680:- OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62291703:+ chr20:60806978-60871269:+ chr20:60866759:+ chr20:63644877 chr20:62288376 NA NA chr20:62276230 chr20:60863432 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Oxysterol-binding_protein_(13%) |Oxysterol_BP(7%) 1 4 3 51 963 ENST00000370053.3 ENST00000358053.3 upstream upstream mismatches(1) CCGCGCCCGCCTCCCGCCCGCCCTCGCTCCCTCCACTCCTCTCCCCTCCCCTCCCCGGCACTGCAGCACCAGCCGTCTGCAGCTCCGGCCGCCACTTGCGCCTCTCCAGCCTCCGCAGGCCCAACCGCCGCCAGCACCATGGCCAGCACCATTTCCG|ATCTGGCCAGCCAGGAGAAGGAGCGGCTGGAGGAGAAGCAGAGAGAAGCACGGAGGGAGCGGGCCAAGGAGGAGGCAGAGTGGCAGACGAG___GTGGTTCTACCCAGGCAATAACCCCTACACTGGGACCCCCGACTGGTTGTATGCAGGGGATTACTTTGAGCGGAATTTCTCCGACTGCCCAGATATCTACTGAGGGCCTGGAGGGGCCTGGGGCCCGGGACCGGAGGCTGACGAGGCTGGACTTCCTCGAGTGGCCACTGTGAGCCTCGTCACAGCAGAAACCAACTTTTCTAACGACTGAGTTCGCGGAGATAGCATCATCCCTGATCAAGGATGTAATTCTAATTAACTGTTGATTGCCAAACATTTCAC MASTIS|dLASQEKERLEEKQREARRERAKEEAEWQTRWFYPGNNPYTGTPDWLYAGDYFERNFSDCPDIY* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14776 ZNF79::RALGPS1 ENSG00000196152.10::ENSG00000136828.19 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1461 TRUE 2591 TRUE 998 ZNF79 ENSG00000196152.10 protein_coding + + chr9:127424374-127445372:+ chr9:127428920:+ chr9:130186653-130207651:+ chr9:130191199:+ RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:127034431:+ chr9:129677053-129985445:+ chr9:129796710:+ chr9:127434458,chr9:127434456 chr9:127016504,chr9:127016499 NA NA chr9:130196737,chr9:130196735 chr9:129778783,chr9:129778778 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(100%),RasGEF_domain(88%) |Fibrinogen_C(100%),PH(100%),RasGEF(65%) 13 4 19 99 49 ENST00000342483.5 ENST00000259351.10 downstream upstream duplicates(1),mismappers(1),mismatches(2) TCGGAAAGCTGGCAGCGGCTTTTTCACCGGGTTCTGCTTGAGGCCGAGCCAAAGAGTGGCTGTGACTCGGGAGACGGAGaGGAACcCCCGGCcGGGCAGGCC...GGCTGCTGTAGATAGACCCTTACGCCCAGAGAACTGCTGGGAGGCTGTGGCGCGAGGCGGGACTCAAATGCTGGAGGAAGGAG___TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG|GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAG___GTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTCAGCCATTTTGTGAAAAT MLEEGVLPSPGPALPQEENTGEEGMAAGLLTAGPR|ELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14777 ZNF79::RALGPS1 ENSG00000196152.10::ENSG00000136828.19 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2591 TRUE 998 ZNF79 ENSG00000196152.10 protein_coding + + chr9:127424374-127445372:+ chr9:127428920:+ chr9:130186653-130207651:+ chr9:130191199:+ RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:127016660:+ chr9:129677053-129985445:+ chr9:129778939:+ chr9:127434458,chr9:127434456 chr9:127016504,chr9:127016499 NA NA chr9:130196737,chr9:130196735 chr9:129778783,chr9:129778778 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none |PH_domain(100%),RasGEF_domain(88%) |Fibrinogen_C(100%),PH(100%),RasGEF(74%) 3 3 22 99 10 ENST00000612342.4 ENST00000259351.10 downstream upstream duplicates(1),mismappers(1),mismatches(2) GCGAGGCGGGACTCAAATGCTGGAGGAAGGAG___...CACGACTGCCGCTGTGTGAGCCGAATCAGAACTCTCTTTATCTCTCCTACAG___TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG|GAGTGAAGCATGGAGGTGGGGACAGACTTCAAGCGATGGAGATATAAACAACCTAG___GAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAG___GTCAGTTTTTGGGTTGTACGAG MAAGLLTAGPR|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14787 LDLRAD3::SYT9 ENSG00000179241.13::ENSG00000170743.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1465 TRUE 2594 TRUE 999 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:35944144:+ chr11:35965531-36253686:+ chr11:35965694:+ SYT9 ENSG00000170743.17 protein_coding + + chr11:7238778-7469043:+ chr11:7303039:+ chr11:7260009-7490274:+ chr11:7324270:+ chr11:36022899,chr11:36022900 chr11:7245056,chr11:7245054 NA NA chr11:36044449,chr11:36044450 chr11:7266287,chr11:7266285 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |C2_domain(100%) |C2(100%) 0 22 1 60 35 ENST00000528989.5 ENST00000318881.11 downstream upstream duplicates(1),mismatches(1) CAGCAACGACGCCGGGCAGCGGGAGCGGCGGCCGCGCCATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGG|ATATCTCAGTGAGCCTGCTGACCCTTGTGGTCACTGCCTGTGGTCTCGCTCTCTTTGGCGTGTCTCTCTTCGTATCTTGGAAACTCTGCTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAAGACAACAACCAGGAGCCCCTTAACTACATGGACACAGAGACCAATGAGCAGGAGAACAGTGAGGACTTCCTAGAcCCTCCCACGCCCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGACATTCCCCTCTCCACCCAGACGGGGATCCAGGAGAACT MWLLGPLCLLLSSAA|dISVSLLTLVVTACGLALFGVSLFVSWKLCWVPWRERGLPSGSKDNNQEPLNYMDTETNEQENSEDFLDPPTPCPDSSMKISHTSPDIPLSTQTGIQEN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14788 LDLRAD3::SYT9 ENSG00000179241.13::ENSG00000170743.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2594 TRUE 999 LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:35944144:+ chr11:35965531-36253686:+ chr11:35965694:+ SYT9 ENSG00000170743.17 protein_coding + + chr11:7238778-7469043:+ chr11:7313395:+ chr11:7260009-7490274:+ chr11:7334626:+ chr11:36022899,chr11:36022900 chr11:7245056,chr11:7245054 NA NA chr11:36044449,chr11:36044450 chr11:7266287,chr11:7266285 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |C2_domain(100%) |C2(100%) 0 1 0 60 44 ENST00000315571.6 ENST00000318881.11 downstream upstream none CCGCGCCATGTGGCTGCTGGGGCCGCTGTGCCTGCTGCTGAGCAGCGCCGCGG|GCATAATTCAATCCGAAGACAACTCAACTTGTCAAACCCGGACTTCAATATCCAGCAGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAAACCAGAGTTATATAAGCAGAGG MWLLGPLCLLLSSAA|giiqsednstcqtrtsisssfknrns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14789 LINC01502::DBH ENSG00000237339.5::ENSG00000123454.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01502 ENSG00000237339.5 lncRNA + - chr9:135574935-135587112:+ chr9:135584893:- chr9:138466781-138478958:+ chr9:138476739:- DBH ENSG00000123454.12 protein_coding + + chr9:133636363-133659329:+ chr9:133656523:+ chr9:136501485-136524451:+ chr9:136521645:+ chr9:135582071,chr9:135582075 chr9:133655808,chr9:133655804 NA NA chr9:138473917,chr9:138473921 chr9:136520930,chr9:136520926 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |Copper_type_II_ascorbate-dependent_monooxygenase__C-terminal_domain(24%) |Cu2_monoox_C(1%) 5 5 12 90 65 unknown ENST00000393056.8 upstream upstream duplicates(2),low_entropy(1),mismatches(1) CCAAGGTCGAGGGCTGCGGAGTCCCAGGGCCCATGAGTCCGGCCGGAGTCTGGTGTGGACACTCTGAACACACGCAGAGGCCTTGTGGCACTCACCTCAGTTACAGCCGACCACGCAGGAATCTAGAGAGAAAGACAGGCAGGGGGTCGCTTCCTCCCCAGGATGCTGAGGCTTCCCCAGTGTACACGGAGTGCCCCGGCTCAGTGTCAGCTGCAGCCCTTCATCCCCATGGGAAATGAACGTCCGGAGAAAAGCAGGAAAATGTGCTCATTACCAAG|GGGGGCTTCGGGATCCTGGAGGAGATGTGTGTCAACTACGTGCACTACTACCCCCAGACGCAGCTGGAGCTCTGCAAGAGCGCTGTGGACGCCGGCTTCCTGCAGAAGTACTTCCACCTCATCAACAG___GTTCAACAACGAGGATGTCTGCACCTGCCCTCAGGCGTCCGTGTCTCAGCAGTTCACCTCTGTTCCCTGGAACTCCTTCAACCGCGACGTACTGAAGGCCCTGTACAGCTTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14795 TUSC2::FAM98A ENSG00000114383.10::ENSG00000119812.20 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1467 TRUE 2596 TRUE 1000 TUSC2 ENSG00000114383.10 protein_coding - - chr3:50320027-50328251:- chr3:50327954:- chr3:50357458-50365682:- chr3:50365385:- FAM98A ENSG00000119812.20 protein_coding - - chr2:33532744-33599347:- chr2:33567204:- chr2:33757811-33824414:- chr2:33792271:- chr3:50327684,chr3:50327690 chr2:33583470,chr2:33583473 NA NA chr3:50365115,chr3:50365121 chr2:33808537,chr2:33808540 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Tumour_suppressor_candidate_2(44%)| TUSC2(7%)|C1_1(100%),EF-hand_5(100%) 1 9 6 275 29 ENST00000232496.5 ENST00000437680.2 upstream downstream duplicates(4),mismatches(3) CGGCACCTGCGATCAGCGGCTGGGGCAGGTTATGGTAGTGCGGACTGCGGTGTGAGCAGAGCGGCCACGGGGCCCGCCATGCGCCGGCGGCCCTGACATGGGCGCCAGCGGGTCCAAAGCTCGGGGCCTGTGGCCCTTCGCCTCGGCGGCCGGAGGCGGCGGCTCAGAGGCAGCAGGAGCTGAGCAAGCTTTGGTGCGGCCTCGGGGCCGAGCTGTGCCCCCCTTCGTATTCACGCGCCGCGG|ACAGTGTGTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTACAATCATAGCTCGCTGCAGCCTTGAACTCCGGTGTTTAAGTAGTCTTCCTGCCTCAGCCTCTCAAATCACTGGGACCATAGGCGTGAGCCACTGCTTTCTTCAAAATTTGACCCAGAATCCAATCAAG___GGTGACAGTGATCATCAGACCTACAAAATGAAG___GAATCTTAAGAAAGATGGCTTAACCCAGTCAGAAGGGACAAGCATAATTTTCTTCC MGASGSKARGLWPFASAAGGGGSEAAGAEQALVRPRGRAVPPFVFTRRg|qcvallprlecsgtiiarcslelrclsslpasasqitgtigvshcflqnltqnpikgdsdhqtykmkes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14796 TUSC2::FAM98A ENSG00000114383.10::ENSG00000119812.20 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2596 TRUE 1000 TUSC2 ENSG00000114383.10 protein_coding - - chr3:50320027-50328251:- chr3:50327954:- chr3:50357458-50365682:- chr3:50365385:- FAM98A ENSG00000119812.20 protein_coding - - chr2:33532744-33599347:- chr2:33583126:- chr2:33757811-33824414:- chr2:33808193:- chr3:50327684,chr3:50327690 chr2:33583470,chr2:33583473 NA NA chr3:50365115,chr3:50365121 chr2:33808537,chr2:33808540 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Tumour_suppressor_candidate_2(44%)| TUSC2(7%)|C1_1(100%),EF-hand_5(100%) 3 3 6 275 4 ENST00000232496.5 ENST00000437680.2 upstream downstream duplicates(2),mismatches(2) CGGAAGGCGGCGGCGGCGGCACCTGCGATCAGCGGCTGGGGCAGGTTATGGTAGTGCGGACTGCGGTGTGAGCAGAGCGGCCACGGGGCCCGCCATGCGCCGGCGGCCCTGACATGGGCGCCAGCGGGTCCAAAGCTCGGGGCCTGTGGCCCTTCGCCTCGGCGGCCGGAGGCGGCGGCTCAGAGGCAGCAGGAGCTGAGCAAGCTTTGGTGCGGCCTCGGGGCCGAGCTGTGCCCCCCTTCGTATTCACGCGCCGCGG|CTAACATTTACAATTATTTTAAAATGTTCAAATTTGAAGACAATTTCAAGTGTTTTATCATTAAA___ACAGTGTGTCGC...CCGGTGTTTAAGTAGTCTTCCTGCCTCAGCCTCTCAAATCACTGGGACCATAGGCGTGAGCCACTGCTTTCTTCAAAATTTGACCCAGAATCCAATCAAGG MGASGSKARGLWPFASAAGGGGSEAAGAEQALVRPRGRAVPPFVFTRRg|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14800 VPS33A::CLIP1 ENSG00000139719.11::ENSG00000130779.22 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1468 TRUE 2598 TRUE 1001 VPS33A ENSG00000139719.11 protein_coding - - chr12:122229564-122266494:- chr12:122263572:- chr12:122714111-122751041:- chr12:122748119:- CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122274162:- chr12:122755979-122907216:- chr12:122758709:- chr12:122261789,chr12:122261819 chr12:122275401,chr12:122275428 NA NA chr12:122746336,chr12:122746366 chr12:122759948,chr12:122759975 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Sec1_family(10%)|CLIP1_zinc_knuckle(100%) Sec1(8%)|CLIP1_ZNF(100%),zf-CCHC_4(100%) 6 8 1 307 636 ENST00000267199.9 ENST00000620786.5 upstream downstream none TGGCGGCTCATCTGTCCTACGGCCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGCGCAGGAAGCAAG___GACAGTGATTAACTCCTTTCTC...TGAATACCTAACTGGACCCTTTGGCCTGATTGCACAGTATTCACTATTGAAG___GAACATGAAGTGGAAAAAATGTTCACACTTAAAGGAAATCGTTTGCCGGCAGCTGATGTGAAGAATATAATTTTTTTTGTCAGACCCAGGCTAGAGTTGATGGATATAATCGCTGAAAACGTGCTCAG|ATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAG___TGATGATCAGGAGAAACAGTCCAAGAAGAAACCTCGCCTCTTCTGTGACATTTGTGACTGCTTTGATCTCCACGACACAGAGGATTGTCCTACCCAGGCACAGATGTCAGAGGACCCTCCCCAT EYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLr|lis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation 14801 VPS33A::CLIP1 ENSG00000139719.11::ENSG00000130779.22 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2598 TRUE 1001 VPS33A ENSG00000139719.11 protein_coding - - chr12:122229564-122266494:- chr12:122263572:- chr12:122714111-122751041:- chr12:122748119:- CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122274143:- chr12:122755979-122907216:- chr12:122758690:- chr12:122261789,chr12:122261819 chr12:122275401,chr12:122275428 NA NA chr12:122746336,chr12:122746366 chr12:122759948,chr12:122759975 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Sec1_family(10%)|CLIP1_zinc_knuckle(100%) Sec1(8%)|CLIP1_ZNF(100%),zf-CCHC_4(100%) 1 0 0 307 630 ENST00000267199.9 ENST00000536634.6 upstream downstream none GGTGGAGCAAGATGGCGGCTgATCTGTCCTACGGCCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGC...TGGATATAATCGCTGAAAACGTGCTCAG|TAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAA DIIAENVLs|nsgpskeesrpqdeggddvrssp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation 14802 SBF2::LRRC4C ENSG00000133812.18::ENSG00000148948.8 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SBF2 ENSG00000133812.18 protein_coding - - chr11:9776776-10304877:- chr11:9895943:- chr11:9798323-10326424:- chr11:9917490:- LRRC4C ENSG00000148948.8 protein_coding - + chr11:40114203-41459773:- chr11:41055976:+ chr11:40135753-41481323:- chr11:41077526:+ chr11:9866885,chr11:9866864,chr11:9866910 chr11:41043096,chr11:41043053,chr11:41043066 NA NA chr11:9888432,chr11:9888411,chr11:9888457 chr11:41064646,chr11:41064603,chr11:41064616 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none DENN_(AEX-3)_domain(100%),Myotubularin_protein_(50%),uDENN_domain(100%)| DENN(100%),SBF2(64%),SPA(100%),uDENN(100%)| 5 3 6 56 11 ENST00000692716.1 unknown upstream upstream duplicates(3) GGAAAATGTTGCTAAGAACCAGAATGCACCTCCTGCCACACGAATAGAAAAGAAATGTGTTGTGCCAGCAGGTCCACCTGTTG___TTTCGATAATGGACAAGGTGACGACAGTTTTCAACAGTGCACAAAGACTAGAAGTTGTCAGAAACTGTATCTCATTCATATTTGAAAATAAAATTTTGGAAACTGAAAAG___ACCCTTCCTGCTGCACTCAGAGCCCTTAAAGGAAAGGCAGCAAGACAGTGTCTCACTGATGAATTGGGTTTGCATGTCCAGCAAAACCGGGCAATATTAGACCATCAACAGTTTGACTACATAATAAGGATGATGAATTGTACTCTACAG___GATTGTTCAAGTTTAGAAGAATACAACATTGCCGCAGCATTACTCCCTTTGACCAGTGCTTTCTATAGG|GTTATTCCACTGAAGGACAGCCACTGGCATTAAGAAGTGTTAGTTACATGTACACAAGATCATGGGTCCTCAG___GACAAGAACTTGGGACCCACTGAATGGTGAGGATAAAAGAACTGTAAAACAAACAGGGCTGAGACATCCTCCTGGCTTGCCATGCTGTGAGCAAAGAGAAGGAAAGAAGAACTGCGA ENVAKNQNAPPATRIEKKCVVPAGPPVVSIMDKVTTVFNSAQRLEVVRNCISFIFENKILETEKTLPAALRALKGKAARQCLTDELGLHVQQNRAILDHQQFDYIIRMMNCTLQDCSSLEEYNIAAALLPLTSAFYR|viplkdshwh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14803 ENSG00000253372::ASAP1 ENSG00000253372.5::ENSG00000153317.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000253372 ENSG00000253372.5 lncRNA + + chr8:122807746-122816517:+ chr8:122807838:+ chr8:123819985-123828756:+ chr8:123820077:+ ASAP1 ENSG00000153317.15 protein_coding - + chr8:130052104-130443674:- chr8:130342349:+ chr8:131064350-131455920:- chr8:131354595:+ chr8:122808352,chr8:122808346,chr8:122808348 chr8:130340754,chr8:130340754,chr8:130340747 NA NA chr8:123820591,chr8:123820585,chr8:123820587 chr8:131353000,chr8:131353000,chr8:131352993 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 2 9 3 27 31 ENST00000521482.5 unknown downstream upstream none GCTTTTTCTGTCTGTCTGTCTGGCTGGCAGGCTGGCTTTCCCCCTCTTTCCCACGGAGCCCGAGCCGGGCGCCCGGTGGGGAGTGGGGAGTGGGTGGGGGG...CAGGCCTTCTCCTGAGATATGTAACCACCTTCTCGGGTGGATACTGCCATTAGACCCATTTTGCAGATAAGCAAACCGAGGCACTGGGAGAAGAAGTAATTTGCTCAAGGCCACCCAGGTG|ATTTTCTCCTCAGAACATCCAGTAACAGAGGCCTTCTGTAAAATACCGTGGGTAAAGTACTCAGCATGAAACCCAGCACATTCTACCAAGAGTGGACCTTGACTTAACAGATGTCCATTCTAAGCTGAAATCCAC...AAAGATGCTCCAGATAGCTGCTATTTGGCCCCCTAGGGAAGCAGAGGCCCAATATACCCAGAAGCAATTTCCAAACACTGAGGAGGGCCTCTCTGAAACTTCTGGAACTGAGAAAGCACCATCCTAAGAAAAACAAAAGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14811 ENSG00000256861::CLIP1 ENSG00000256861.1::ENSG00000130779.22 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2600 TRUE 1002 ENSG00000256861 ENSG00000256861.1 protein_coding - - chr12:122207779-122266423:- chr12:122263572:- chr12:122692326-122750970:- chr12:122748119:- CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122274162:- chr12:122755979-122907216:- chr12:122758709:- chr12:122261789,chr12:122261819 chr12:122275401,chr12:122275428 NA NA chr12:122746336,chr12:122746366 chr12:122759948,chr12:122759975 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |CLIP1_zinc_knuckle(100%) Sec1(8%)|CLIP1_ZNF(100%),zf-CCHC_4(100%) 5 8 1 307 636 ENST00000535844.1 ENST00000620786.5 upstream downstream none CCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGCGCAGGAAGCAAG___GACAGTGATTAACTCCTTTCTC...TGAATACCTAACTGGACCCTTTGGCCTGATTGCACAGTATTCACTATTGAAG___GAACATGAAGTGGAAAAAATGTTCACACTTAAAGGAAATCGTTTGCCGGCAGCTGATGTGAAGAATATAATTTTTTTTGTCAGACCCAGGCTAGAGTTGATGGATATAATCGCTGAAAACGTGCTCAG|ATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAG___TGATGATCAGGAGAAACAGTCCAAGAAGAAACCTCGCCTCTTCTGTGACATTTGTGACTGCTTTGATCTCCACGACACAGAGGATTGTCCTACCCAGGCACAGATGTCAGAGGACCCTCCCCAT EYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLr|lis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation 14812 ENSG00000256861::CLIP1 ENSG00000256861.1::ENSG00000130779.22 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2600 TRUE 1002 ENSG00000256861 ENSG00000256861.1 protein_coding - - chr12:122207779-122266423:- chr12:122263572:- chr12:122692326-122750970:- chr12:122748119:- CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122274143:- chr12:122755979-122907216:- chr12:122758690:- chr12:122261789,chr12:122261819 chr12:122275401,chr12:122275428 NA NA chr12:122746336,chr12:122746366 chr12:122759948,chr12:122759975 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |CLIP1_zinc_knuckle(100%) Sec1(8%)|CLIP1_ZNF(100%),zf-CCHC_4(100%) 1 0 0 307 630 ENST00000535844.1 ENST00000536634.6 upstream downstream none GGTGGAGCAAGATGGCGGCTgATCTGTCCTACGGCCGAGTGAACCTAAACGTGTTGCGCGAGGCGGTGCGTCGCGAGCTGCGCGAGTTCCTGGACAAGTGC...TGGATATAATCGCTGAAAACGTGCTCAG|TAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAA DIIAENVLs|nsgpskeesrpqdeggddvrssp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation 14813 ENSG00000254682::LRCH1 ENSG00000254682.2::ENSG00000136141.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1470 FALSE NA FALSE NA ENSG00000254682 ENSG00000254682.2 lncRNA + + chr11:71448562-71452157:+ chr11:71448885:+ chr11:71159608-71163203:+ chr11:71159931:+ LRCH1 ENSG00000136141.15 protein_coding + + chr13:46553168-46753040:+ chr13:46650201:+ chr13:47127303-47327175:+ chr13:47224336:+ chr11:71449553,chr11:71449551 chr13:46648660,chr13:46648655 NA NA chr11:71160599,chr11:71160597 chr13:47222795,chr13:47222790 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Calponin_homology_(CH)_domain(100%),Leucine_rich_repeat(99%) |CH(100%),LRR_8(31%) 2 4 6 49 50 ENST00000529369.2 ENST00000311191.10 downstream upstream duplicates(1),mismatches(2) GCCTCTGGCGCTTCTTCGGGATCCCAGCTGACCAGCTGGGGGTGGGGCGgGGCGGAGTGGCCACGTGGGCCGCGCGGAGAACGCGCCAGGCTCATCACCTGGATCATCGTGCCTCAGTTTCCCCCTCGGCAAATGGGGCTTCAGCGGCTCGCGACGCACATTGATGGAGCGTATGTCCAGGCGCCGGTGCACCGCAAGGAGCAAAACAGACACAGTTCTTGGTCCTAGGGCTCACGTCCCGGGGCGAAGAGGATCCTCCATAAACGATCAG|ACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACTGGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATGCTGACTTACCTGAACTTGAG___TCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCA...GAGCTG___GATGTCAGCTGCAACGAGATCACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAAATTACCTTAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14819 ENSG00000290421::RGS22 ENSG00000290421.1::ENSG00000132554.21 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000290421 ENSG00000290421.1 lncRNA + + chr20:49318475-49441654:+ chr20:49332024:+ chr20:47935012-48058191:+ chr20:47948561:+ RGS22 ENSG00000132554.21 protein_coding - - chr8:99960936-100131268:- chr8:100064043:- chr8:100973164-101143496:- chr8:101076271:- chr20:49338864,chr20:49338821 chr8:100064245,chr8:100064288 NA NA chr20:47955401,chr20:47955358 chr8:101076473,chr8:101076516 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Regulator_of_G_protein_signaling_domain(100%) |RGS(100%) 2 2 6 10 23 ENST00000637091.1 ENST00000360863.11 downstream downstream none GGAAGAGGTGGCTGCAATGGTTCAGGCAAGAGACTATGGTGGTTGAACCAGGGAGGTGGCAGTGGGGTGATGAAAAGTGGGAGTGTTGCTTCCTCTGCTTG...TGACTTGCTAATATGTGCCAAGTGCCTCACCACATGACCTGACTCTGTGAG___...CAGTGATGCAATCATGGCTCCCTGCAGCCTTGATCTTCTGAGCTCAG___TCCCTGCTTTGATAACCACAGGCAGCTACGGGAAAGAGTGGGAAAAGTGAGATAGTCCCAAGAAACAGGCAACAGCAGG|AGAATTTTATCTTTGATGATGGAGTTCACCCTAGGACAAAAAAGGACCCATCTAAAACCAACAAATTGATTTCTGAATTTGAAGAAGAAGAAGGAGAAGAAGAAGAGGTGTCTGTATCTCTACAAGACACTCCTTCTCAAGCTCTTCTGAGAGTATACCT...CCTGACAATGCATTTCTCAACATGTGAAGAATTTTTAAGCTCCTATATATACTTTATTTTGAGAGGAGCAATTCAGCAAATTGTTGGAAAGCCAGTTGGAGAAACCCCAGACTATATAAACTTCAACAATATAACAAAAGTGTCATTTGATGATTGTTTTGAGTCTATTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14820 IMPA1P1::PVT1 ENSG00000251521.3::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IMPA1P1 ENSG00000251521.3 transcribed_unprocessed_pseudogene - - chr8:81605569-81626949:- chr8:81622403:- chr8:82517804-82539184:- chr8:82534638:- PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127972882:- chr8:128806772-129199347:+ chr8:128985128:- chr8:81621091,chr8:81621093 chr8:127973899,chr8:127973898 NA NA chr8:82533326,chr8:82533328 chr8:128986145,chr8:128986144 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 3 5 2 45 54 ENST00000510718.1 unknown upstream downstream duplicates(2),mismatches(1) GAAGAATGGAAATATTTCATAG___TCTCTCATAACTGGTAAAATACCTTCATATCCCTGACCTCGAAGTGGCAGCACTCATCCAGCTACCTCAGAGTTGACAA...GAACTGAACCCTTTATTTGACCAAGAAGATATCATCATATGTTATAAACTGTACCATAAATCTGGTGACTGATGAAGAAGGAGAAACAAATGTGACTATTC...GTTTCACTGGTGAGGAATCTGGCAGCTGGGGAAAAAGGTGTCTTAACTGACAACCCTACGTGGATCATTGACCCTATTGATGGAACAACTAAGTTTGTCCATAG___ATTTCCTTTTGTAGCTGTTTCGATTGGCCTTGTTGTAAATAAGAAG|CTCAAACTTGGCTGACATTAGGATCACCTGGGAGCTTCAAGAAGCACAGATGCCCCAGTCCTTCCCAGAGCAATTATGTCATCAGCTTCTCTGGGAGCGGAACCCTGGCAAAGCTATTTCTATTTATTTATTATTATTTTTTTTGAGACAGAGTCTTGCACTGTTGCCCAGGGTAGAGTGCAATAGCGGGATCTCGGCTTACTGCAACCTCTGCCTCCTGGGTTCAAGTGATCCTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14821 ZHX2::ASAP1 ENSG00000178764.8::ENSG00000153317.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZHX2 ENSG00000178764.8 protein_coding + + chr8:122781655-122974510:+ chr8:122781946:+ chr8:123793894-123986750:+ chr8:123794185:+ ASAP1 ENSG00000153317.15 protein_coding - + chr8:130052104-130443674:- chr8:130342349:+ chr8:131064350-131455920:- chr8:131354595:+ chr8:122808352,chr8:122808346,chr8:122808348 chr8:130340754,chr8:130340754,chr8:130340747 NA NA chr8:123820591,chr8:123820585,chr8:123820587 chr8:131353000,chr8:131353000,chr8:131352993 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 2 6 2 217 31 ENST00000314393.6 unknown downstream upstream duplicates(1),mismatches(1) TTTTTTTTCTTTTAAAAATTTTGGCCAcCGTTCTCCGTACGGGGGCTTTTTCTGTCTGTCTGTCTGGCTGGCAGGCTGGCTTTCCCCCTCTTTCCCACGGAGCCCGAGCCGGGCGCCCGGTGGGGAGTGGGGAGTGGGTGGGGGGAGCCAGCAGAGTTCCATTTTGGAACGCCCGTGCCGCGTCTCCGCGTTCCCAGCCCGGGTCCCCGCGTTCACAGCCCCAGCGCAG|ATTTTCTCCTCAGAACATCCAGTAACAGAGGCCTTCTGTAAAATACCGTGGGTAAAGTACTCAGCATGAAACCCAGCACATTCTACCAAGAGTGGACCTTGACTTAACAGATGTCCATTCTAAGCTGAAATCCACAGGGAAAGATGCTCCAGATAGCTGCTATTTGGCCCCCTAGGGAAGCAGAGGCCCAATATACCCAGAAGCAATTTCCAAACACTGAGGAGGGCCTCTCTGAAACTTCTGGAACTGAGAAAGCACCATCCTAAGAAAAACAAAAGCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14831 CA13::CSMD3 ENSG00000185015.8::ENSG00000164796.18 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CA13 ENSG00000185015.8 protein_coding + + chr8:85220587-85284073:+ chr8:85245865:+ chr8:86132816-86196302:+ chr8:86158094:+ CSMD3 ENSG00000164796.18 protein_coding - + chr8:112222928-113436939:- chr8:112986377:+ chr8:113235157-114449168:- chr8:113998606:+ chr8:85250444,chr8:85250443 chr8:112953901,chr8:112953897 NA NA chr8:86162673,chr8:86162672 chr8:113966130,chr8:113966126 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Eukaryotic-type_carbonic_anhydrase(3%)| Carb_anhydrase(0%)| 0 6 2 4 12 ENST00000321764.4 unknown downstream upstream low_entropy(1),mismatches(1) CGCGGTCCCGCCCTAGCAGGCTCCTTCCCGGGCCCCTCCCCGCTCCCTCCTCTTTCTCGCTGCTCAGTCACATCTTTCTCTTCCTTCCACCCCGAGGGACCATGTCGAGGCTCAGCTGGGGATACCGCGAGCACAACG|GTATTATTTGATTGATCCTGTGAAAACTTTTGGAATGACAGAGAATGGGCATGATGACATCACAAGGACATCTAGGCAAAACTCATGAAAGCATCATTTTATTAAATGAGAAACGGAAAGAAG___ATATGAAGATGAATATTCAATCATTTTCCTGAAGTATACTTTTAACCTTTATAAAG___CTTCCACCTTGGATCTCTTGG MSRLSWGYREHN|gii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14832 ENSG00000283529::RGS22 ENSG00000283529.2::ENSG00000132554.21 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2602 TRUE 1003 ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49332024:+ chr20:47934874-47956974:+ chr20:47948561:+ RGS22 ENSG00000132554.21 protein_coding - - chr8:99960936-100131268:- chr8:100064043:- chr8:100973164-101143496:- chr8:101076271:- chr20:49338864,chr20:49338821 chr8:100064245,chr8:100064288 NA NA chr20:47955401,chr20:47955358 chr8:101076473,chr8:101076516 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Regulator_of_G_protein_signaling_domain(100%) |RGS(100%) 1 2 5 10 23 ENST00000636663.1 ENST00000360863.11 downstream downstream none GGAAGAGGTGGCTGCAATGGTTCAGGCAAGAGACTATGGTGGTTGAACCAGGGAGGTGGCAGTGGGGTGATGAAAAGTGGGAGTGTTGCTTCCTCTGCTTG...TGACTTGCTAATATGTGCCAAGTGCCTCACCACATGACCTGACTCTGTGAG___...ATGCAATCATGGCTCCCTGCAGCCTTGATCTTCTGAGCTCAG___TCCCTGCTTTGATAACCACAGGCAGCTACGGGAAAGAGTGGGAAAAGTGAGATAGTCCCAAGAAACAGGCAACAGCAGG|AGAATTTTATCTTTGATGATGGAGTTCACCCTAGGACAAAAAAGGACCCATCTAAAACCAACAAATTGATTTCTGAATTTGAAGAAGAAGAAGGAGAAGAAGAAGAGGTGTCTGTATCTCTACAAGACACTCCTTCTCAAGCTCTTCTGAGAGTATACCT...CCTGACAATGCATTTCTCAACATGTGAAGAATTTTTAAGCTCCTATATATACTTTATTTTGAGAGGAGCAATTCAGCAAATTGTTGGAAAGCCAGTTGGAGAAACCCCAGACTATATAAACTTCAACAATATAACAAAAGTGTCATTTGATGATTGTTTTGAGTCTATTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14833 ENSG00000283529::RGS22 ENSG00000283529.2::ENSG00000132554.21 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2602 TRUE 1003 ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49335696:+ chr20:47934874-47956974:+ chr20:47952233:+ RGS22 ENSG00000132554.21 protein_coding - - chr8:99960936-100131268:- chr8:100064043:- chr8:100973164-101143496:- chr8:101076271:- chr20:49338864,chr20:49338821 chr8:100064245,chr8:100064288 NA NA chr20:47955401,chr20:47955358 chr8:101076473,chr8:101076516 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Regulator_of_G_protein_signaling_domain(100%) |RGS(100%) 2 0 5 9 23 ENST00000636663.1 ENST00000360863.11 downstream downstream none CAGTGATGCAATCATGGCTCCCTGCAGCCTTGATCTTCTGAGCTCAG___TCCCTGCTTTGATAACCACAGGCAGCTACGGGAAAGAGTGGGAAAAGTGAGATAGTCCCAAGAA...GAGTGAATGGCCTGCCCAGGACACCAGGAGCCGGCGCTGCTACGGGGACGGTGGTGGGGCCAAAGG|AGAATTTTATCTTTGATGATGGAGTTCACCCTAGGACAAAAAAG...ACAAATTGATTTCTGAATTTGAAGAAGAAGAAGGAGAAGAAGAAGAGGTGTCTGTATCTCTACAAGACACTCCTTCTCAAGCTCTTCTGAGAGTATACCT...CCTGACAATGCATTTCTCAACATGTGAAGAATTTTTAAGCTCCTATATATACTTTATTTTGAGAGGAGCAATTCAGCAAATTGTTGGAAAGCCAGTTGGAGAAACCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14834 ENSG00000283529::RGS22 ENSG00000283529.2::ENSG00000132554.21 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2602 TRUE 1003 ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49335696:+ chr20:47934874-47956974:+ chr20:47952233:+ RGS22 ENSG00000132554.21 protein_coding - - chr8:99960936-100131268:- chr8:100062752:- chr8:100973164-101143496:- chr8:101074980:- chr20:49338864,chr20:49338821 chr8:100064245,chr8:100064288 NA NA chr20:47955401,chr20:47955358 chr8:101076473,chr8:101076516 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Regulator_of_G_protein_signaling_domain(100%) |RGS(100%) 0 1 0 9 44 ENST00000636663.1 ENST00000360863.11 downstream downstream none CCTGCCCAGGACACCgGGAGCCGGCaCTGCTACGGGGACGGTGGTGGGGCCAAAGG|ACATCTTGAGAAGATGAAAAAATGCTATCTAGTGAGCAATGGAG...AGTCTGAAGTTTTAAAACCTTTACTTCTGTATTG___GGCACCAAGATTCTGTGTTACTCATTCAGCCTCAACAAAATATGCTAGTGCTGAACTGAAATTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14835 EXT1::COL14A1 ENSG00000182197.13::ENSG00000187955.13 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:117835444:- chr8:118806729-119124065:- chr8:118847683:- COL14A1 ENSG00000187955.13 protein_coding + + chr8:120059780-120373573:+ chr8:120147806:+ chr8:121072019-121385812:+ chr8:121160045:+ chr8:117833541,chr8:117833543,chr8:117833543,chr8:117833544 chr8:120121751,chr8:120121751,chr8:120121749,chr8:120121749 NA NA chr8:118845780,chr8:118845782,chr8:118845782,chr8:118845783 chr8:121133990,chr8:121133990,chr8:121133988,chr8:121133988 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Exostosin_family(97%)|Collagen_triple_helix_repeat_(20_copies)(100%),Fibronectin_type_III_domain(100%),von_Willebrand_factor_type_A_domain(100%) Exostosin(98%)|Collagen(100%),VWA(100%),VWA_2(100%),VWA_3(100%),fn3(100%) 1 2 5 93 11 ENST00000378204.7 ENST00000297848.8 upstream upstream none CAGACACCAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCT...GGGAAATGCTGCACAATGCCACTTTCTGTCTGGTTCCTCGTGGTCGCAGGCTTGGGTCCTTCAGATTCCTGGAGGCTTTGCAG___GCTGCCTGCGTCCCTGTGATGCTCAGCAATGGATGGGAGTTGCCATTCTCTGAAGTGATTAATTGGAACCAAGCTGCCGTCATAGGCGATGAGAGATTGTTATTACAG|GTGGCTGCTACACCCCATGTAAAAAGCGGAAAATAAAATGAAGATTTTCCAGCGCAAGATGCGGTACTGGTTGCTTCCACCTTTTTTGGCAATTGTTTATTTCTGCACCATTGTCCAAGGTCAAG___TGGCTCCACCCACAAGGTTAAGATATAATGTAATATCTCATGACAGTATACAGATTTCATGGAAGGCTCCAAGAGGGAAATTTG EMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVINWNQAAVIGDERLLLQ|vaatphvksgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 14841 ZHX2::ENSG00000254394 ENSG00000178764.8::ENSG00000254394.2 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2604 TRUE 1004 ZHX2 ENSG00000178764.8 protein_coding + + chr8:122781655-122974510:+ chr8:122781946:+ chr8:123793894-123986750:+ chr8:123794185:+ ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82944376:+ chr8:82945768-83874161:+ chr8:83856611:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site intron duplication high none none none 1 5 2 217 22 ENST00000314393.6 ENST00000663058.1 downstream upstream duplicates(1) ATTTTTTTTCCCTTTTTTTTTCC-TTTTTTTTTTCTTTTAAAAATTTTGGCCAcCGTTCTCCGTACGGGGGCTTTTTCTGTCTGTCTGTCTGGCTGGCAGGCTGGCTTTCCCCCTCTTTCCCACGGAGCCCGAGCCGGGCGCCCGGTGGGGAGTGGGGAGTGGGTGGGGGGcGCCAGCAGAGTTCCATTTTGGAACGCCCGTGCCGCGTCTCCGCGTTCCCAGCCCGGGTCCCCGCGTTCACAGCCCCAGCGCAG|CTGAACAAAATAACAAAATATGGGAAACTATCAG___GACAATTTCCTAAATTGAACACTCTTTCATGGAAAAAAGTAAATTGGAACCTGCACTTGTGAGGCTTGGAAACTACCACCTAAGATGTTTAAAAGGAAAACTGTCGTTTGCCTCAAAATGTTTATCCTTGGGAAGGAATCAATATTGTGCTGACTTTCTCCCCATACCTAAGTTGGCTTTGCTCCAATAaTATTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14842 ZHX2::ENSG00000254394 ENSG00000178764.8::ENSG00000254394.2 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2604 TRUE 1004 ZHX2 ENSG00000178764.8 protein_coding + + chr8:122781655-122974510:+ chr8:122781946:+ chr8:123793894-123986750:+ chr8:123794185:+ ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82952337:+ chr8:82945768-83874161:+ chr8:83864572:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 0 2 217 27 ENST00000314393.6 ENST00000663058.1 downstream upstream none CTGGCAGGCTGGCTTTCCCCCTCTTTCCCACGGAGCCCGAGCCGGGCGCCCGGTGGGGAGTGGGGAGTGGGTGGGGGGAGCCAGCAGAGTTCCATTTTGGAACGCCCGTGCCGCGTCTCCGCGTTCCCAGCCCGGGTCCCCGCGTTCACAGCCCCAGCGCAG|GACAATTTCCTAAATTGAACACTCT...CTGACTTTCTCCCCATACCTAAGTTGGCTTTGCTCCAATAaTATTATTTCCCTCTTTACAAAGTAAAAGTCCAAACAAAAAAACTGTTACTTAAATAAGTTCCTCTCTAATTTATTTGTTCCCCAATGTCACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14843 ENSG00000254394::CDK12 ENSG00000254394.2::ENSG00000167258.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2605 TRUE 1005 ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82414766:+ chr8:82945768-83874161:+ chr8:83327001:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39544249:+ chr17:37617739-37723812:+ chr17:37700502:+ NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site translocation high none none none 2 0 6 17 31 ENST00000663058.1 ENST00000559663.2 downstream upstream duplicates(1) CTCAGATGTGATTGGAGGTCATTGGGAAACACTGTGGGTCTTCTCTGTCTGGCCTTGgAG___GCTGAGATTTAGGAAAGGGTATAAATGACTCAGAAGTGGAAACTGCCTGCTGGAGAATGATGTGCTTAGAAGTCCCCCACTGATATACCAGCCAACTTGGGATGCCTTCTGCTGGTGTACCAtCAAGACTTGCTGAGAGGCTGTTCACTGGAGATCTG|GTAGGAGCAACGGTGGGAATGCCCTCTGAGGAATGCAGTGATGTCCATCAGTCACCTCTCACCCAGAGCCTGGCAAATTCAGTCTCTTTCACAGAACCTAAAGCCAAGCCAG___GTTCAGTGGGAAATCCCACCTGTCCAAACACTGTGTGAGACACCAGAATTAGAGGCCTGCAAGCCTGCTTCCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 14844 ENSG00000254394::CDK12 ENSG00000254394.2::ENSG00000167258.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2605 TRUE 1005 ENSG00000254394 ENSG00000254394.2 lncRNA + + chr8:82033533-82961926:+ chr8:82381632:+ chr8:82945768-83874161:+ chr8:83293867:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39544249:+ chr17:37617739-37723812:+ chr17:37700502:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 0 1 5 64 31 ENST00000663058.1 ENST00000559663.2 downstream upstream duplicates(1) GGAAAATCGAATCCAGAGAGAAATCGCCCTGGCCAAGAAGCACGGCACGCAGAATAAGCGAG___CATCTGGAAACATAAGGAGCTTATGAAGTCCTTGCAGCAGAGTTGAAGGAGCCTCAGATGTGATTGGAGGTCATTGGGAAACACTGTGGGTCTTCTCTGTCTGGCCTTGAAG|GTAGGAGCAACGGTGGGAATGCCCTCTGAGGAATGCAGTGA...ATCAGTCACCTCTCACCCAGAGCCTGGCAAATTCAGTCTCTTTCACAGAACCTAAAGCCAAGCCAG___GTTCAGTGGGAAATCCCACCTGTCCAAACACTGTGTGAGA...CTACCCCCACCTTTCTTGCTTGCTG___TGCCTCTCTCATCCCTGCAATCCAGACAGCACATGCAGCAGCTCAA___GTTATCTGATCACACAGAACAGGCaTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 14846 SYS1-DBNDD2::HOXB9 ENSG00000254806.5::ENSG00000170689.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYS1-DBNDD2 ENSG00000254806.5 protein_coding + + chr20:45363200-45410610:+ chr20:45365686:+ chr20:43991840-44039250:+ chr20:43994326:+ HOXB9 ENSG00000170689.10 protein_coding - - chr17:48621156-48626358:- chr17:48623135:- chr17:46698518-46703720:- chr17:46700497:- chr20:45391978,chr20:45391976 chr17:48625365,chr17:48625367 NA NA chr20:44020618,chr20:44020616 chr17:46702727,chr17:46702729 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Homeodomain(100%) SYS1(5%)|Homeodomain(100%) 3 2 2 679 5 ENST00000419593.5 ENST00000311177.7 downstream downstream mismatches(1) GTGCGAAGCAGCCCCTCGCTGGACCAGATGTTCGACGCCGAG___ATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCATGATGTCCTTCATCCTCAACGCCCTCACCTG|CCAACCCCTCCGCCAACTGGCTGCACGCTCGCTCTTCCCGGAAAAAGCGCTGTCCCTACACCAAATACCAGACGCTGGAGCTAGAGAAGGAGTTTCTGTTCAATATGTACCTCACCAGGGACCGTAGGCACGAAGTGGCCAGACTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGGCGGATGAAAATGAAGAAAATGAATAAGGAGCAGGGCAAAGAGTAAAGATTAAAG VRSSPSLDQMFDAEILGFSTPPGRLSMMSFILNALTc|qplrqlaarslfpekalslhqipdagaregvsvqyvphqgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14847 PLEKHF2::CDH17 ENSG00000175895.5::ENSG00000079112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2606 TRUE 1006 PLEKHF2 ENSG00000175895.5 protein_coding + + chr8:95115642-95156698:+ chr8:95116628:+ chr8:96127870-96168926:+ chr8:96128856:+ CDH17 ENSG00000079112.10 protein_coding - - chr8:94127162-94217303:- chr8:94189285:- chr8:95139390-95229531:- chr8:95201513:- chr8:95119918,chr8:95119917,chr8:95119913 chr8:94190261,chr8:94190262,chr8:94190262 NA NA chr8:96132146,chr8:96132145,chr8:96132141 chr8:95202489,chr8:95202490,chr8:95202490 NA NA sense sense unknown intron CDS/splice-site inversion high none |Cadherin_domain(100%) |Cadherin(100%) 0 1 5 5 22 ENST00000700745.1 ENST00000450165.6 downstream downstream mismappers(2) CTCCCACCTCAGCCCCCCAAGTAGCTGGGACTACAGGTGAATGCCAACACAACCAGCTAATTTTTCTTTTTTTTAGAGACGGGGTCTTGCTGTGTTGCTCAGGCTAGTCTTGAATTTCTGCACTCAAGTGATCCTCCTGCCTCGGCCTTCCAAAGTGCTGGAATTACAG|GCAACTGGATATGGCCAAGAGGGGAAGTTTAGTGGACCCCTGAAACCCATGACATTTTCTATTTATGAAGGCCAAGAACCGAGTCAAATTATATTCCAG___TTTAAGGCCAATCCTCCTGCTGTGACTTTTGAACTAACTGGGGAGACAGACAACATATTTGTGATAGAACGGG...TCTCGCCCAG___GAAAGCCCTTCTTGTATGTCAATGCCACAGACCTGGATGATCCGGCCACTCCCAATGGCCAGCTTTATTACCAGATTGTCATCCAGCTTCCCATGATCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 17 2 melanoma epithelial oncogene missense 14848 PLEKHF2::CDH17 ENSG00000175895.5::ENSG00000079112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2606 TRUE 1006 PLEKHF2 ENSG00000175895.5 protein_coding + + chr8:95115642-95156698:+ chr8:95116495:+ chr8:96127870-96168926:+ chr8:96128723:+ CDH17 ENSG00000079112.10 protein_coding - - chr8:94127162-94217303:- chr8:94189285:- chr8:95139390-95229531:- chr8:95201513:- chr8:95119918,chr8:95119917,chr8:95119913 chr8:94190261,chr8:94190262,chr8:94190262 NA NA chr8:96132146,chr8:96132145,chr8:96132141 chr8:95202489,chr8:95202490,chr8:95202490 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Cadherin_domain(100%) |Cadherin(100%) 0 1 2 8 22 ENST00000700745.1 ENST00000450165.6 downstream downstream none CTGGATCATGCTTTTTACAAGTGACTGTACTCGCTACTTTTTTGTTTTGTTTTGTTTGAGATAGGATCTTGCTCTGTCATCCAGGCTGGAGTGCAGTGGTG...GCTCACTGCAGCCTCAACCCCCTGGGCTCAAGCGATCCTCCCACCTCAGCCCCCCAAGTAGCTGGGACTACAG|GCAACTGGATATGGCCAAGAGGGGAAGTTTAGTGGACCCCTGAAACCCATGACATTTTCTATTTATGAAGGCCAAGAACCGAGTCAAATTATATTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 17 2 melanoma epithelial oncogene missense 14849 TRAF3::ZNF839 ENSG00000131323.17::ENSG00000022976.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2607 FALSE NA TRAF3 ENSG00000131323.17 protein_coding + + chr14:102777449-102911500:+ chr14:102777675:+ chr14:103243786-103377837:+ chr14:103244012:+ ZNF839 ENSG00000022976.16 protein_coding + + chr14:102317377-102342702:+ chr14:102331622:+ chr14:102783714-102809039:+ chr14:102797959:+ chr14:102786243,chr14:102786237 chr14:102327035,chr14:102327026 NA NA chr14:103252580,chr14:103252574 chr14:102793372,chr14:102793363 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF4764)(65%) |DUF4764(65%) 0 5 1 14 106 ENST00000392745.8 ENST00000558850.5 downstream upstream none CCCCCCGCCATGGGGCAGCCCGGGGAGCAGAAtGCTGCGGACCGCGGCGGAGGACGCGCCCGGCGCCCCTGAGCCGGCCGAGCGGCGACGGACCGCGAG|AATGGTCAGTCTGTAGACGTTGAAGAGACATTGCCATCTGAACCAGAAAATGGAGCTCTTTTGCGATCAGAGAGATACCAAGGACCTAGAAGACGCGCATGCTCAGAGACCCTTGCAGAGTCCCGCACAGCTGTCCTCCAGCAGAGAAGAGCTGCTCAGCTACCTGGTGGCCCTGCTGCGGCAGGGGAGCAGAGGGCGTCGCCAAGCAAAGCCAGGCTCAAGGAG___TTCCTCCAGCAGTGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14851 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37247103:+ chr14:37667099-38048330:+ chr14:37716308:+ chr14:37603247 chr14:37231515 NA NA chr14:38072452 chr14:37700720 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none none none 2 2 2 70 51 ENST00000553443.6 ENST00000537471.7 downstream upstream none CTGCGGCCCAGTCTCGCGCCCCTCCTGCTCTTTGCTTCCTCCCTCCTGATTCCTGACCCAAAGTTCAACCCCGGGAGACTGGAGAATACAGACTTTTTTTTTTCTTTCCTCCTGAGAGCTTCAGACTAGAAAAGGGAAAAAGCCCCACTTTTGCTTCGTCACTAGAAACCGGGTCATCTGAGTCAGCCGAGCCAAGTGACGTTAGGCCGACCCGGGCCCCGGGCTAGCAGAGCGGAGGCGCTGCCACGAAACTCGTACCTGCGGCTAAGAGCAG|CTAATCCAAAAGTAAATGAGAAACTTAGAAAAAGATTGCCAATTCCAAATCAACATATTTAGAGAAAATTGGAAAAGGAGAAGCTTACTACAGCTTTATTTGAGGACTTTTTAAAGAACGCTGGGTTCTATCTGTGAG___CTGCAAATCTTGGAGCAAAAACCAGAGACATTGCCAGAGCAAACAAGAACAGAAATACAAATGGAGAACTGGTCAAAAG___ACGAGAGATGCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14855 FUT8::RTN1 ENSG00000033170.17::ENSG00000139970.18 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ RTN1 ENSG00000139970.18 protein_coding - + chr14:59595976-59870776:- chr14:59777762:+ chr14:60062694-60337494:- chr14:60244480:+ chr14:65537238 chr14:59769114 NA NA chr14:66003956 chr14:60235832 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 0 3 152 7 ENST00000673929.1 unknown downstream upstream mismatches(2) TCCCACTCCCCCATCGTGGGGCAGCTGCGGCTGAGGGCTGTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|GTCTTTGGAAATCAAAAACGGAAGCAAGTCAAGACAAAACAACAACAACAACAACAACAACAAcAAAAAAAAACAAAACAACAAA----ACACACACACACACACAAAACACCCTAATATTTACTCTGTGTCTCTCCTGTGCCAAGTCAGGGTGGCATGATGCAGCCTCTACGTGTCTCTTTAGCTTCTTTTTGTACCACATTCACTCTTGTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14859 UACA::LRRC49 ENSG00000137831.15::ENSG00000137821.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70687540:- chr15:70946893-71055897:- chr15:70979879:- LRRC49 ENSG00000137821.12 protein_coding + - chr15:70853239-71053658:+ chr15:70963497:- chr15:71145578-71345997:+ chr15:71255836:- chr15:70686655 chr15:70975482 NA NA chr15:70978994 chr15:71267821 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ankyrin_repeats_(3_copies)(82%)| Ank(100%),Ank_2(74%),Ank_3(9%),Ank_4(100%),Ank_5(47%)| 2 1 0 70 3 ENST00000322954.11 unknown upstream downstream none CGGGCGGACACCACTTGTTCTGGCTACTCAGATGAGTAGGCCAACAATATGTCAACTGCTGATAGATAGAGGAGCGGATGTTAATTCCAGAGACAAACAAAACAG|GATCCCATGGAGGATACCATATTACATTTAGTTGTCATATCTCCTGAGGCTCCTCTTGGCTGTGACAATTTCTCA...TTTTTTTGAGACCAGGTCTCACTCTGTCATCCAGGCTGGGTTTCAGTGGTGCAATCATAGCTAATCCTAACCTCAAACTCTTGGGCTCGAGCAATCCaCCC GRTPLVLATQMSRPTICQLLIDRGADVNSRDKQNr|ipwripyyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14863 CHD6::DLGAP4 ENSG00000124177.16::ENSG00000080845.19 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD6 ENSG00000124177.16 protein_coding - - chr20:41402083-41618384:- chr20:41437274:- chr20:40030723-40247023:- chr20:40065914:- DLGAP4 ENSG00000080845.19 protein_coding + - chr20:36306336-36528637:+ chr20:36321976:- chr20:34894258-35157040:+ chr20:34950379:- chr20:41430202,chr20:41430206 chr20:36325833,chr20:36325834 NA NA chr20:40058842,chr20:40058846 chr20:34954236,chr20:34954237 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)| Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%)| 0 2 1 273 7 ENST00000373233.8 unknown upstream downstream none CAATGCTGAGGACAAAGTAGATGGCCTCCAGAAACAAACG|GGTCTGGCATCAAGTGGGCACTCAACAAATATTTGTTGAATGAATGAATGAATCTATCTGCCACAGCAGACAGACTTGGAGAAACCTCTGGAAGGTCGGCATCAAAATGTGGTCACCACTGCAG NAEDKVDGLQKQT|glassghstnic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14872 ERBB2::CHMP4C ENSG00000141736.14::ENSG00000164695.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1474 FALSE NA FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39688800:+ chr17:37844167-37886679:+ chr17:37845053:+ CHMP4C ENSG00000164695.5 protein_coding + + chr8:81732448-81759515:+ chr8:81753064:+ chr8:82644683-82671750:+ chr8:82665299:+ chr17:39691553,chr17:39691554 chr8:81732720,chr8:81732715 NA NA chr17:37847806,chr17:37847807 chr8:82644955,chr8:82644950 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Snf7(76%) |Snf7(20%) 8 8 7 290 3637 ENST00000584601.5 ENST00000297265.5 downstream upstream duplicates(2) TTTTGTGGGCGCCTGCCCCGCCCCTCGTCCCCCTGCTGTGTCCATATATCGAGGCGATAGGGTTAAGGGAAGGCGGACGCCTGATGGGTTAATGAGCAAACTGAAGTGTTTTCCATGATCTTTTTTGAG___TCGCAATTGAAGTACCACCTCCCGAGGGTGATTGCTTCCCCATGCGGGGTAGAACCTTTGCTGTCCTGTTCACCACTCTACCTCCAGCACAGAATTTGGCTTATG|CTGCATTACAGGCACTAAAGAGAAAGAAGAGGTTCGAGAAACAGCTCACTCAGATTGATGGCACACTTTCTACCATTGAGTTCCAGAGAGAAGCCCTGGAGAACTCACACACCAACACTGAGGTGTTGAGGAACATGGGCTTTGCAGCAAAAGCGATGAAATCTGTTCATGAAAACAT___GGATCTGAACAAAATAGATGATTTGATGCAAGAGATCACAGAGCAACAGGATATCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 14873 ENSG00000254394::ATAD2 ENSG00000254394.2::ENSG00000156802.13 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000254394 ENSG00000254394.2 lncRNA + - chr8:82033533-82961926:+ chr8:82895437:- chr8:82945768-83874161:+ chr8:83807672:- ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123350238:- chr8:124332090-124428590:- chr8:124362478:- NA NA NA NA NA NA NA NA antisense sense unknown intron intron duplication/3'-3' medium none |AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(36%),Bromodomain(100%) |AAA(11%),AAA_2(9%),AAA_lid_3(100%),Bromodomain(100%) 8 2 12 15 27 unknown unknown upstream downstream duplicates(2),mismappers(1),mismatches(1) GTCAGCCACATACAATTTTGTCTTTTTCATCACATGTCCCCTCTGATCCTGATTCTGCAGGAGGACTGAAATAGTGCGTAGAGAGTATGGGAAAAGGTGAA...ATTTAACAAAGTGGGAAGCACTTTAAATAGCATGAGAGATTGAAATTTTTATATTAGATTGTATTGATATTACATTATATTGATATTATATATTCTTAAACCTGAAAATGAGACTGCTTATAAACAAATAAAATTCATCAGAAAAGATAAGAACTATGCCAAAGATATCAAATGACAGAGAAGGTTTAAAATGTAGTGATGAAAAAGAATATTTGACAATTACCTTTATAATCAGAAAGCCTTTTTCTTTGTAAGCTATTAGAATTCTGATACCATATTGTTTCCATTTCTTT|TTGTTGAAGCTGAGTGATGGAAATTTGGAGATCATTTTACTATTCTGTCTTTATAATAAAAAGTTTAAAATGTAATGAAAATTCTGTTATGCTTTATGTATATTCTATTTTGGTGTCCTTTGATAATGTATATACAGTGGAAATTTTATTATTTTTAGATACTGTGTGTCCTACCTGGTGCTACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-548d-1 chr8:123348034-123348130:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14875 CDK12::STARD3 ENSG00000167258.16::ENSG00000131748.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1475 TRUE 2611 TRUE 1007 CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39551142:+ chr17:37617739-37723812:+ chr17:37707395:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39653481:+ chr17:37793343-37820454:+ chr17:37809734:+ chr17:39554202,chr17:39554202 chr17:39645187,chr17:39645184 NA NA chr17:37710455,chr17:37710455 chr17:37801440,chr17:37801437 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site deletion/read-through medium none Protein_kinase_domain(100%)|Cholesterol-capturing_domain(100%),START_domain(100%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|MENTAL(100%),START(100%) 3 9 10 37 13680 ENST00000558240.1 ENST00000336308.10 downstream upstream duplicates(1),mismatches(1) AGGAgGGGAGGCACTGGGGAGAGG?GCCAGGATTTCCCCCCAACTGCCAGGACCTCCAAACGGATTGGAACTATACTGGTTGACTCAGGTCTGGAGCCCAAAATCACAGCCAGAATATAAG___ATGTGAAAAACAAGACCCAGAGAGGGGAAATCATTTGAATCCTGTCCTGGTATTGCTTTGTGTTCCTGGATTTGGAGAATTTCTGGGAACACAGGAAAAGGAAAG|CCCTGCTGCTGAGGCCGCGCCCTCCCCGCCCTGAGGTGGGGGCCCACCAGGATGAGCAAGCTGCCCAGGGAGCTGACCCGAGACTTGGAGCGCAGCCTGCCTGCCGTGGCCTCCCTGGGCTCCTCACTGTCCCACAGCCAGAGCCTCTCCTCGCACCTCCTTCCGCCGCCTGAGAAGCGAAGGGCCATCTCTGATGTCCGCCGCACCTTCTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATCGAACTGAAT___ACCAACACAGGCATCCGTAAGAACTTGGAGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 14876 CDK12::STARD3 ENSG00000167258.16::ENSG00000131748.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2611 TRUE 1007 CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39547830:+ chr17:37617739-37723812:+ chr17:37704083:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39653481:+ chr17:37793343-37820454:+ chr17:37809734:+ chr17:39554202,chr17:39554202 chr17:39645187,chr17:39645184 NA NA chr17:37710455,chr17:37710455 chr17:37801440,chr17:37801437 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site deletion/read-through low none Protein_kinase_domain(100%)|Cholesterol-capturing_domain(100%),START_domain(100%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|MENTAL(100%),START(100%) 0 1 1 37 13680 ENST00000559663.2 ENST00000336308.10 downstream upstream none CTTGCTTGCTG___GCCTCCTCTCTCTGCAGTGCCTCTCTCATCCCTGCAATCCAGACAGCACATGCAGCAGCTCAA|CCCTGCTGCTGAGGCCGCGCCCTCCCCGCCCTGAGGTGGGGGCCCACCAGGATGAGCAAGCTGCCCAGGGAGCTGACCCGAG...TCCGCCGCCTGAGAAGCGAAGGGCCATCTCTGATGTCCGCCGCACCTTCTGTCTCTTCGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 14888 ASAP1::CCDC26 ENSG00000153317.15::ENSG00000229140.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2615 TRUE 1008 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130348633:- chr8:131064350-131455920:- chr8:131360879:- CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128894631:- chr8:129646445-130696016:- chr8:129906877:- NA NA NA NA NA NA NA NA sense sense unknown intron intron deletion medium none BAR_domain_of_APPL_family(3%)| BAR(4%),BAR_3(4%)| 3 1 5 5 1 unknown unknown upstream downstream duplicates(1) ACATAATAAATGCAGGTATTTATTATGTACCTGCATAATTGATTGTGGTCATTTGTGGGGAGGTGAAACATTTATGCCTTGGCCCTGACTGGTACAGAGCATGGCAGCTAGGTTAGGTGCTTTACTGATTACAGTTTGAAGCACTGAGACCACAAGAAATTCTATTTTGGTTAGGAGGCAGGAGCCTTAAAGCAAAAGAGATCTCTCCTTGAATTTTCATTTCTGTGTGCTTCATAGCTTGTTTTCAGTGTCAGTAAAACGAGTT|ATAGCCTAAATGCCCACAAGAGAAAGCAGGAAAGATCCAAAATTGACACCCTAACATCACAATTAAAAGAACTAGAAAAGCAAGAACAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAAATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTGGTTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14889 ASAP1::CCDC26 ENSG00000153317.15::ENSG00000229140.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2615 TRUE 1008 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808169:- chr8:129646445-130696016:- chr8:129820415:- chr8:130348629,chr8:130348636 chr8:128894630,chr8:128894634 NA NA chr8:131360875,chr8:131360882 chr8:129906876,chr8:129906880 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 1 0 1 56 4 ENST00000518721.6 ENST00000675388.1 upstream downstream none GTGGCGGGCTGCGCGCCGGGGTTCATGAGCCTCCGGGCGGCCCGCGGCCCCGGGAGCCTGCGCCGTGACTCACCCCCCGCCCCCGCTTGTGTCTCGTCCCT...CTGTCTCGGAGTTCATCGCCGAGACCACCGAGGACTACAACTCGCCCACCACGTCCAGCTTCACCACGCGGCTGCACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCT VSEFIAETTEDYNSPTTSSFTTRLHNCRNTVTLLEE|snfkalthlvsddvrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14890 ASAP1::CCDC26 ENSG00000153317.15::ENSG00000229140.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2615 TRUE 1008 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128654063:- chr8:129646445-130696016:- chr8:129666309:- chr8:130348629,chr8:130348636 chr8:128894630,chr8:128894634 NA NA chr8:131360875,chr8:131360882 chr8:129906876,chr8:129906880 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 0 1 0 56 7 ENST00000518721.6 ENST00000643616.1 upstream downstream duplicates(1) CCGAGGACTACAACTCGCCCACCACGTCCAGCTTCACCACGCGGCTGCACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|TCAGTTTTCAAGTTCTAT...TGCAGGCCAGTAAAATCTGCATTGACAACCTGGATCAACTTAAGAAGAAAGTGATCAGAGTTAGGAACACATTCAGAACCATAAGACAGCAAGAATTCTTC EDYNSPTTSSFTTRLHNCRNTVTLLEE|svfkf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14894 STARD3::PCAT1 ENSG00000131748.16::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39637231:+ chr17:37793343-37820454:+ chr17:37793484:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127150384:+ chr8:127568568-128431295:+ chr8:128162629:+ chr17:39643885,chr17:39643883 chr8:127146294,chr8:127146289 NA NA chr17:37800138,chr17:37800136 chr8:128158539,chr8:128158534 NA NA sense sense unknown 5'UTR/splice-site intron translocation medium none none none 1 5 1 12258 18 ENST00000578232.5 unknown downstream upstream mismatches(1) GGCGGACTCAGCGGCGGAAGTGGCGCTGCCGGAAGATCTTCTTCCGCTCTGAGGCGCTACTGAGGCCGCGGAGCCGGACTGCGGTTGGGGCGGGAAGAGCCGGGGCCGTGGCTGACATGGAGCAG|ATGCAACTTTAACACTGTATATTCCCGATCTGATATGAAACAAACAACAGCACCACATTTTCCCTGGATATTGTTTTGCCAAGGCTTTGATCGCCACTGCAATGTGCCAGTAAGGCAAGAGGAAAATGAGAGATCTTTGAGTTCAATGATCTTGTCTAATTAAGCTGGAGCTCTTCCTTGGAACCCCAAGCCATCATGTTTGTGGTCAGCATTGGAGCTGTGAACATCCTTGCAACTGGTGTTTGGCACAACCTACTTTGATCAGCTTCTGTTCATCCACCAGCATTCCTATGCCATAGAGAGTCAATGAGGTAAGACTAAGCCAGATGGACCACCTACAAATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14895 STARD3::CASC19 ENSG00000131748.16::ENSG00000254166.4 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39637231:+ chr17:37793343-37820454:+ chr17:37793484:+ CASC19 ENSG00000254166.4 lncRNA - + chr8:127072694-127227541:- chr8:127150384:+ chr8:128084939-128239786:- chr8:128162629:+ chr17:39643885,chr17:39643883 chr8:127146294,chr8:127146289 NA NA chr17:37800138,chr17:37800136 chr8:128158539,chr8:128158534 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' medium none none none 1 5 1 12258 18 ENST00000578232.5 unknown downstream upstream mismatches(1) GGCGGACTCAGCGGCGGAAGTGGCGCTGCCGGAAGATCTTCTTCCGCTCTGAGGCGCTACTGAGGCCGCGGAGCCGGACTGCGGTTGGGGCGGGAAGAGCCGGGGCCGTGGCTGACATGGAGCAG|ATGCAACTTTAACACTGTATATTCCCGATCTGATATGAAACAAACAACAGCACCACATTTTCCCTGGATATTGTTTTGCCAAGGCTTTGATCGCCACTGCAATGTGCCAGTAAGGCAAGAGGAAAATGAGAGATCTTTGAGTTCAATGATCTTGTCTAATTAAGCTGGAGCTCTTCCTTGGAACCCCAAGCCATCATGTTTGTGGTCAGCATTGGAGCTGTGAACATCCTTGCAACTGGTGTTTGGCACAACCTACTTTGATCAGCTTCTGTTCATCCACCAGCATTCCTATGCCATAGAGAGTCAATGAGGTAAGACTAAGCCAGATGGACCACCTACAAATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14898 SNORC::EIF4E2 ENSG00000182600.10::ENSG00000135930.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2616 TRUE 1009 SNORC ENSG00000182600.10 protein_coding + + chr2:232857270-232878708:+ chr2:232876447:+ chr2:233721980-233743418:+ chr2:233741157:+ EIF4E2 ENSG00000135930.15 protein_coding + + chr2:232550659-232583644:+ chr2:232556416:+ chr2:233415369-233448354:+ chr2:233421126:+ chr2:232876638,chr2:232876636 chr2:232555499,chr2:232555494 NA NA chr2:233741348,chr2:233741346 chr2:233420209,chr2:233420204 NA NA sense sense unknown 3'UTR CDS/splice-site duplication medium none Small_Novel_Rich_in_Cartilage(100%)|Eukaryotic_initiation_factor_4E(100%) DUF4690(100%)|IF4E(100%) 2 2 2 6 1339 ENST00000331342.5 ENST00000687222.1 downstream upstream mismatches(1) CGGCG___GGTCGCTGGGGCCCGGCGtTATCGCGGCCAaCGTGATCGCCGCCCTGCTGGCCACCTGCGTGGTGCTGGCGCTCGTGGTCGTCGCGCTGAGAAAGT...AGCGAATAAAGGGGCCGCGCCCGGCCGCGGCGCGACTCGGCTGCACTCCTCACGCGCCTGTATGTCCGCGCGTGCGTGTCCGCGCATGCAG|TTTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAGAAAGATGGTGAGAAGGAAAAAACGGAACGAGACAAGAATCAGAGCAGTAGCAAGAGAAAGG...GGACCTGACAGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATTAAACCCATGTGGGAG___GATGATGCAAATAAAAATGGTGGCAAGTGGATTATTCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14899 SNORC::EIF4E2 ENSG00000182600.10::ENSG00000135930.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2616 TRUE 1009 SNORC ENSG00000182600.10 protein_coding + + chr2:232857270-232878708:+ chr2:232876122:+ chr2:233721980-233743418:+ chr2:233740832:+ EIF4E2 ENSG00000135930.15 protein_coding + + chr2:232550659-232583644:+ chr2:232556416:+ chr2:233415369-233448354:+ chr2:233421126:+ chr2:232876638,chr2:232876636 chr2:232555499,chr2:232555494 NA NA chr2:233741348,chr2:233741346 chr2:233420209,chr2:233420204 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Small_Novel_Rich_in_Cartilage(62%)|Eukaryotic_initiation_factor_4E(100%) DUF4690(43%)|IF4E(100%) 3 0 1 8 1339 ENST00000331342.5 ENST00000409098.5 downstream upstream none GGAGACCCAAGTTGAAAGGCAAGCTTGGTGTGCCTTGCTTAGGGGGACAGTCATCTGCCTGGATTTTCTGACTTTGGTAACATGAAATGGAGCCTTAAGCA...GGGGTTCTGGCCCCTGCGGTGCTCACAG___ACGATGTTCCACAGGAGCCCGTGCCCACGCTGTGGAACGAGCCGGCCGAGCTGCCGTCGGGAGAAGGCCCCGT...CCAGCCCCGGCCGGGAGCCCGTGGACACCGGTCCCCCAGCCCCCACCGTCGCGCCAGGACCCGAGGACAGCACCGCGCAGGAGCGGCTGGACCAGGGCGGCG|TTTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAGAAAGATGGTGAGAAGGAAAAAACGGAACGAGACAAGAATCAGAGCAGTAGCAAG SPGREPVDTGPPAPTVAPGPEDSTAQERLDQGG|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14908 SYS1-DBNDD2::HOXB7 ENSG00000254806.5::ENSG00000260027.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SYS1-DBNDD2 ENSG00000254806.5 protein_coding + + chr20:45363200-45410610:+ chr20:45365686:+ chr20:43991840-44039250:+ chr20:43994326:+ HOXB7 ENSG00000260027.5 protein_coding - - chr17:48607232-48633572:- chr17:48608095:- chr17:46684594-46710934:- chr17:46685457:- chr20:45391978,chr20:45391976 chr17:48625365,chr17:48625367 NA NA chr20:44020618,chr20:44020616 chr17:46702727,chr17:46702729 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |Homeodomain(100%) SYS1(5%)|Homeodomain(60%) 2 0 2 679 8 ENST00000452133.1 ENST00000239165.9 downstream downstream duplicates(1),mismatches(1) CGGCTCGTGTCCCTGCAGGGCATGGCGGGgCAGTTCCGCAGCTACGTGTGGGgCCCGCTGCTGATCCTGTCGCAGATCGTCCTCATGCAGACCGgGTATTA...GGCTCGCTGGGCCTGTGGCTGGCGCTGGTGGACGGGCTAGTGCGAAGCAGCCCCTCGCTGGACCAGATGTTCGACGCCGAG___ATCCTGGGCTTTTCCACCCCTCCAGGCCGGCTCTCCATGATGTCCTTCATCCTCAACGCCCTCACCTG|GAACTGACCGCAAACGAGGCCGCCAGACCTACACCCGCTACCAGACCCTGGAGCTGGAGAAAGAATTTCACTACAAT...TGACGCGGCGGCGGCGCATCGAGATCGCGCACACGCTCTGCCTCACGGAAAGACAGATCAAGATTTGGTTTCAGAACCGGCGCATGAAGTGGAAAAAGGAG GSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSMMSFILNALTw|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14911 SETD3::ENSG00000258842 ENSG00000183576.13::ENSG00000258842.1 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SETD3 ENSG00000183576.13 protein_coding - - chr14:99397748-99480889:- chr14:99458279:- chr14:99864085-99947226:- chr14:99924616:- ENSG00000258842 ENSG00000258842.1 lncRNA - - chr14:62069518-62081154:- chr14:62077569:- chr14:62536236-62547872:- chr14:62544287:- chr14:99437932 chr14:62081061 NA NA chr14:99904269 chr14:62547779 NA NA sense sense out-of-frame CDS/splice-site intron deletion medium none SET_domain(57%)| SET(5%)| 1 0 2 383 1 ENST00000331768.10 unknown upstream downstream none AAGACCGAATCCTTCAAGCCATGGGAAACATCGCACTGGCCTTTCATTTGCTGTGTGAGCGAGCCAGCCCTAACTCCTTCTGGCAGCCCTATATTCAAACCCTCCCCAGaGAATATGACACTCCTCTCTA...GATGAAGTTCGGTATCTTCAGTCCACACAAGCTATACATGATGTCTTCAGCCAGTATAAAAACACAGCTCGACAGTACGCCTACTTCTATAAAGTCATCCAG|ATTTTAATTAACTTCTCAAGGCCAACCAATTAATCAGTGGAAAGCAGAGATGAAAAGTGGGACACCTGTCTCCCTGTGTGCTCAAAATCACCAGCCACACTCCCATTGTCTTTCCTGCCAAGCCCTGGGTCTGC DEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQ|ilinfsrptn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14979 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1477 TRUE 2628 TRUE 1010 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36512543:+ chr18:33877676-34360183:+ chr18:34092506:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36256968:+ chr18:33767460-33852120:+ chr18:33836931:+ chr18:36526621,chr18:36526621 chr18:36255414,chr18:36255411 NA NA chr18:34106584,chr18:34106584 chr18:33835377,chr18:33835374 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Formin_N-terminal_GTPase-binding_domain(100%)|MOSC_domain(100%) Formin_GBD_N(100%)|MOSC(100%) 39 71 44 135 221 ENST00000590592.6 ENST00000261326.6 downstream upstream duplicates(7),mismatches(9),multimappers(1) ACAGCATCATCCTAAGGACGCAGCTGTCTGTGAGGGTCCATGCCTGCATCG___AAAAACTATACAACTCCAGCGGACGAGATTTGAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG___GATGACAAGGATTTGGTGCATGAATTTGTAGTGGCTGAAGGTCTGACATGTTTGATCAAGGTGGGAGCTGAGGCTGATCAGAACTATCAGAACTACATCTTAAGGG|ATCAACTTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTATTTTGGAACTTCACCGGCAACTAAACACCAG___TGATGAGAATGGAAAGGAGGAATTATTCTCACTGAAGGATCTCAGCTTGCGTTTTCG SIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILR|dQLPGTMATLSLVNEAQYLLINTSSILELHRQLNTSDENGKEELFSLKDLSLRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,FALSE,FALSE|FALSE 33836931,33828885,33836931|33846712 TRUE,FALSE,TRUE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14981 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2628 TRUE 1010 FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36512543:+ chr18:33877676-34360183:+ chr18:34092506:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36266749:+ chr18:33767460-33852120:+ chr18:33846712:+ chr18:36526621,chr18:36526621 chr18:36255414,chr18:36255411 NA NA chr18:34106584,chr18:34106584 chr18:33835377,chr18:33835374 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Formin_N-terminal_GTPase-binding_domain(100%)|MOSC_domain(45%) Formin_GBD_N(100%)|MOSC(16%) 1 1 5 135 261 ENST00000590592.6 ENST00000261326.6 downstream upstream none AAACTATACAACTCCAGCGGACGAGATTTGAGAAGGGCCCTCTTCTCCCTGAAGCAGATATTTCAG___GATGACAAGGATTTGGTGCATGAATTTGTAGTGGCTGAAGGTCTGACATGTTTGATCAAGGTGGGAGCTGAGGCTGATCAGAACTATCAGAACTACATCTTAAGGG|GTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGACCAGCAAACTGGGCAACGAAACCAGCATGTTTTCCAAAAACTTTCTGAGAGTCGTGAAACAAAG___GTGAACTTTGGCATGTACCTGATGCATGCATCATTGGATTTATC KLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILR|gfgalsqmpddlhrpanwatkpacfpktf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,FALSE,FALSE|FALSE 33836931,33828885,33836931|33846712 FALSE,FALSE,FALSE|TRUE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14988 SUN1::FAM133B ENSG00000164828.18::ENSG00000234545.8 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1481 TRUE 2630 TRUE 1011 SUN1 ENSG00000164828.18 protein_coding + + chr7:816615-896435:+ chr7:872562:+ chr7:856252-936072:+ chr7:912199:+ FAM133B ENSG00000234545.8 protein_coding - - chr7:92560758-92590393:- chr7:92569915:- chr7:92190072-92219707:- chr7:92199229:- chr7:875977,chr7:875977,chr7:875977 chr7:92571572,chr7:92571595,chr7:92571606 NA NA chr7:915614,chr7:915614,chr7:915614 chr7:92200886,chr7:92200909,chr7:92200920 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Mitochondrial_RNA_binding_protein_MRP(100%),SUN2_helix-turn-helix_domain(100%),Sad1_/_UNC-like_C-terminal_(73%)| HTH_SUN2(100%),MRP(100%),Sad1_UNC(89%)| 8 44 30 1035 392 ENST00000452783.6 ENST00000445716.6 downstream downstream duplicates(4),mismatches(18) CTCTGGAGCACATCCCTAAGACGCTGTCGCCAACAGGCAACATCAGCAGCGCCCCCAAGGACTTCGCCGTCTAT___GGATTAGAAAATGAGTATCAGGAAGAAGGGCAGCTTCTGGGACAGTTCACGTATGATCAGGATGGGGAGTCGCTCCAGATGTTCCAGGCCCTG|GATATTAAAGGACTCAGCAAAAAGAGAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAG___GTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGAAAAAGCAACA___GAAAAAACAAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTCAAGTCCTGACTCACCATAACATTAAGAAAAATCA LEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQAL|DIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASSSPDSP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14989 SUN1::FAM133B ENSG00000164828.18::ENSG00000234545.8 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2630 TRUE 1011 SUN1 ENSG00000164828.18 protein_coding + + chr7:816615-896435:+ chr7:866067:+ chr7:856252-936072:+ chr7:905704:+ FAM133B ENSG00000234545.8 protein_coding - - chr7:92560758-92590393:- chr7:92569915:- chr7:92190072-92219707:- chr7:92199229:- chr7:875977,chr7:875977,chr7:875977 chr7:92571572,chr7:92571595,chr7:92571606 NA NA chr7:915614,chr7:915614,chr7:915614 chr7:92200886,chr7:92200909,chr7:92200920 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Mitochondrial_RNA_binding_protein_MRP(100%),SUN2_helix-turn-helix_domain(100%),Sad1_/_UNC-like_C-terminal_(8%)| HTH_SUN2(100%),MRP(100%),Sad1_UNC(0%)| 1 0 5 948 392 ENST00000452783.6 ENST00000445716.6 downstream downstream mismatches(1) CCCACCACGTTTCCGTGACCAAGCAGCTCCCAACCTCAGAAGCCGTGGTGTCTGCTGTGAGCGAGGCGGGGGCGTCTGGAATAACAGAGGCG___CAAGCACGTGCCATCGTGAACAGCGCCTTGAAGCTGTATTCCCAAGATAAGACCGGGATGGTGGACTTTGCTCTGGAATCTGGTG___GTGGCAGCATCTTGAGTACTCGCTGTTCTGAAACTTACGAAACCAAAACGGCGCTGATGAGTCTGTTTGGGATCCCGCTGTGGTACTTCTCGCAGTCCCCGCGCGTGGTCATCCAG|GATATTAAAGGACTCAGCAAAAAGAGAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAG___GTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGA HHVSVTKQLPTSEAVVSAVSEAGASGITEAQARAIVNSALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALMSLFGIPLWYFSQSPRVVIQ|DIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEER NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14990 B3GNTL1::OGFOD3 ENSG00000175711.9::ENSG00000181396.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1482 TRUE 2631 TRUE 1012 B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:83014454:- chr17:80900025-81009685:- chr17:80972330:- OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82392534:- chr17:80347086-80376513:- chr17:80350410:- chr17:83009539,chr17:83009541,chr17:83009541 chr17:82395364,chr17:82395363,chr17:82395361 NA NA chr17:80967415,chr17:80967417,chr17:80967417 chr17:80353240,chr17:80353239,chr17:80353237 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Glycosyl_transferase_family_2(67%)|2OG-Fe(II)_oxygenase_superfamily(35%) Glyco_tranf_2_3(80%),Glycos_transf_2(41%)|2OG-FeII_Oxy_3(0%) 17 29 19 122 175 ENST00000320865.4 ENST00000313056.10 upstream downstream duplicates(4),mismatches(1) GCACGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG___GATGACGTCATGATGCCCCAGCGGGTGAGGCTGCAACACGAGGCTGCCGTTCAGCACCCGTCGAGC|GTCGCGTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCATCACCATCGCCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAGCCAGCAGCCGGGCCAAGGTAACTTCAGGAGGGCCCGTGTGGAGGCAGCCGCGCCAGTCGTGCACCCACCCCCACGTCCACCCGCTCCTGTTGCACAGAGTGCCTTAGGA HDSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSS|vaspssprgprtytawrrstgapvtpspspsaatptmasrtqrsrsqqpgqgnfrrarveaaapvvhppprppapvaqsal NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14991 B3GNTL1::OGFOD3 ENSG00000175711.9::ENSG00000181396.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2631 TRUE 1012 B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:83014454:- chr17:80900025-81009685:- chr17:80972330:- OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82394543:- chr17:80347086-80376513:- chr17:80352419:- chr17:83009539,chr17:83009541,chr17:83009541 chr17:82395364,chr17:82395363,chr17:82395361 NA NA chr17:80967415,chr17:80967417,chr17:80967417 chr17:80353240,chr17:80353239,chr17:80353237 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Glycosyl_transferase_family_2(67%)|2OG-Fe(II)_oxygenase_superfamily(35%) Glyco_tranf_2_3(80%),Glycos_transf_2(41%)|2OG-FeII_Oxy_3(18%) 1 0 19 122 36 ENST00000320865.4 ENST00000329197.9 upstream downstream duplicates(1),mismatches(1) CGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG___GATGACGTCATGATGCCCCAGCGGGTGAGGCTGCAACACGAGGCTGCCGTTCAGCACCCGTCGAGC|GATGTTTTTGTTTCCGGATGATGTCTTGTGGGTTCCAAGAAGTTAATGGACC DSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSS|dvfvsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14992 B3GNTL1::OGFOD3 ENSG00000175711.9::ENSG00000181396.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2631 TRUE 1012 B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:83035035:- chr17:80900025-81009685:- chr17:80992911:- OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82392534:- chr17:80347086-80376513:- chr17:80350410:- chr17:83009539,chr17:83009541,chr17:83009541 chr17:82395364,chr17:82395363,chr17:82395361 NA NA chr17:80967415,chr17:80967417,chr17:80967417 chr17:80353240,chr17:80353239,chr17:80353237 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Glycosyl_transferase_family_2(54%)|2OG-Fe(II)_oxygenase_superfamily(35%) Glyco_tranf_2_3(35%),Glycos_transf_2(16%)|2OG-FeII_Oxy_3(0%) 0 1 10 107 175 ENST00000320865.4 ENST00000313056.10 upstream downstream duplicates(1) ATTCTGGTGTCCACGTGATCATTGGGGGGCACGATTCTCCCTCTCCTAGAGGCG___TCGGATACGCTAAAAATCAAGCAGTTGCCCAGAGCTCAGGGTCTTACCTTTGCTTTTTGGATTCG|GTCGCGTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCATCACCATCGCCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAGCCAGCAGCCGGGCCAAGGTAACTTCAGGAGGGCCCGTGTGGAGGCAGCCGCGCCAGTCGTGCACCCACCCCCACGTCCACCCGCTCCTGTTGCACAGAGTGCCTTAGGAATTCTC SGVHVIIGGHDSPSPRGVGYAKNQAVAQSSGSYLCFLDS|vaspssprgprtytawrrstgapvtpspspsaatptmasrtqrsrsqqpgqgnfrrarveaaapvvhppprppapvaqsalgi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14993 NHSL1::MAP7 ENSG00000135540.12::ENSG00000135525.19 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1483 TRUE 2632 TRUE 1013 NHSL1 ENSG00000135540.12 protein_coding - - chr6:138422043-138692571:- chr6:138447001:- chr6:138743180-139013708:- chr6:138768138:- MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136421799:- chr6:136663419-136871957:- chr6:136742937:- chr6:138440700,chr6:138440702 chr6:136459440,chr6:136459439 NA NA chr6:138761837,chr6:138761839 chr6:136780578,chr6:136780577 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |MAP7_(E-MAP-115)_family(100%) |MAP7(100%) 7 13 37 117 278 ENST00000427025.6 ENST00000618822.4 upstream downstream duplicates(5),mismatches(3) GATTTATTTCCATCAGGAGACCTAAAACACCAGCCTCAAGTGACTTCTCCGACCTTAATACTCAGACGAACTGGACCAAGTCGCTTCCACTGCCAACACCAGAAGAGAAGATGCGACAGCAAGCCCAAACAGTCCAGGCTGACGTGGTGCCTATTAACATAACTG|CACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAG___ACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCCCGGGAGCGACGTGAGGAACGGGAGAAACAGCTAG___CTGCAAGAGAAATAGTGTGGTTAGAAAGAGAAGA FISIRRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINIT|aPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDDRQRLARERREEREKQLAAREIVWLERE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14994 NHSL1::MAP7 ENSG00000135540.12::ENSG00000135525.19 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1484 TRUE 2632 TRUE 1013 NHSL1 ENSG00000135540.12 protein_coding - - chr6:138422043-138692571:- chr6:138441983:- chr6:138743180-139013708:- chr6:138763120:- MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136421799:- chr6:136663419-136871957:- chr6:136742937:- chr6:138440700,chr6:138440702 chr6:136459440,chr6:136459439 NA NA chr6:138761837,chr6:138761839 chr6:136780578,chr6:136780577 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |MAP7_(E-MAP-115)_family(100%) |MAP7(100%) 3 2 47 35 278 ENST00000343505.10 ENST00000618822.4 upstream downstream duplicates(4),mismatches(4) CTTCCACTGCCAACACCAGAAGAGAAGATGCGACAGCAAGCCCAAACAGTCCAGGCTGACGTGGTGCCTATTAACATAACTG___GGGAGAATTTCGATCGCCAGGCCAGCCTTCGGCGGTCTCTAATTTACACAGACACTCTGGTAAGACGACCGAAGAAAGTCAAAAGGAGAAAGACTATTACAGGAGTCCCTGACAACATACAGAAGGAGCTAG|CACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAG___ACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCCCGGGAGCGACGTGAGGAACGGGAGAAACAGCTAG___CTGCA LPLPTPEEKMRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTITGVPDNIQKEL|aPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDDRQRLARERREEREKQLA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14995 NHSL1::MAP7 ENSG00000135540.12::ENSG00000135525.19 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2632 TRUE 1013 NHSL1 ENSG00000135540.12 protein_coding - - chr6:138422043-138692571:- chr6:138496219:- chr6:138743180-139013708:- chr6:138817356:- MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136421799:- chr6:136663419-136871957:- chr6:136742937:- chr6:138440700,chr6:138440702 chr6:136459440,chr6:136459439 NA NA chr6:138761837,chr6:138761839 chr6:136780578,chr6:136780577 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |MAP7_(E-MAP-115)_family(100%) |MAP7(100%) 0 1 2 162 278 ENST00000427025.6 ENST00000616617.4 upstream downstream none GGACAGTCCACTACACTGCCCCGTGGCACCAGCAGGAGAATGTGTTCCTTCCCACCACAAGACCCCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTACTGAGGG|CACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAG___ACCCTCCG...TCTCCTCTTCATCTGCAACTTTACTAAATTCTCCAGATAGAG___CTCGCCGCCTGCAGCTCAGCCCATGGGAGAGCAGCGTTGTTAACAGACTCCTGACGCCC TVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLR|aPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14996 NUP188::SEC24D ENSG00000095319.14::ENSG00000150961.15 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP188 ENSG00000095319.14 protein_coding + + chr9:128947699-129007096:+ chr9:128973249:+ chr9:131709978-131769375:+ chr9:131735528:+ SEC24D ENSG00000150961.15 protein_coding - + chr4:118722823-118838683:- chr4:118784715:+ chr4:119643978-119759838:- chr4:119705870:+ chr9:128979016,chr9:128979011 chr4:118784433,chr4:118784425 NA NA chr9:131741295,chr9:131741290 chr4:119705588,chr4:119705580 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Nucleoporin_subcomplex_protein_binding_to_Pom34(40%)| Nup188(50%)| 8 2 25 406 12 ENST00000372577.2 unknown downstream upstream duplicates(1),mismatches(7) TCCGGAAGATAGGTGGCACAGCCATCCAGCTGAATGTGTTTCAGTACTTGACCCGATTGCTCCAGTCCCTTGCCAGTGGGGGAAATGAT___TGCACCACCAGCACTGCATGCATGTGTGTCTATGGACTGCTCTCTTTCGTTCTGACCTCGTTGGAGCTGCACACCCTGGGCAATCAGCAG|GTACTGCTCATAACATCCTTCCCTGCCCCCCCCCCCGCCACCAAATACACACAAACACACACTCACAAATACTACATACCTTCCTCTGTGAGATGATATTGAGAGAAACACTGGAGTGGGGGGAGAATAATAGTGAAACCTAAGCTAAACTTTAT RKIGGTAIQLNVFQYLTRLLQSLASGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQ|vllitsfpapppatkytqththkyyipssvr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14998 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930174:+ chr17:57970407-58027935:+ chr17:58007535:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(40%)|SNARE_associated_Golgi_protein(58%) PK_Tyr_Ser-Thr(74%),Pkinase(73%)| 9 8 8 255 603 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(1),mismatches(3) GGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GGTCAGTTAAATGAAAGCATGGACCATGGGGG...TTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG___GCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTG___GAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAA FQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTAw|tlppgpnwqfkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 14999 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1486 TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59931722:+ chr17:57970407-58027935:+ chr17:58009083:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(53%)|SNARE_associated_Golgi_protein(58%) Kinase-like(1%),PK_Tyr_Ser-Thr(80%),Pkinase(79%)| 2 4 10 507 603 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(3),mismatches(2) AAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTG___GAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTG___CTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGG KDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQ|glclpgqtgssktsteswifwnfglcfnsksfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15000 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59931052:+ chr17:57970407-58027935:+ chr17:58008413:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none Protein_kinase_domain(40%)|SNARE_associated_Golgi_protein(58%) PK_Tyr_Ser-Thr(77%),Pkinase(77%)| 0 1 9 4 603 ENST00000472940.5 ENST00000262291.9 downstream upstream mismatches(1) AGACAGGGTTGATTCAGCCCTTTATTCTTTTGAG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15001 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930432:+ chr17:57970407-58027935:+ chr17:58007793:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none Protein_kinase_domain(40%)|SNARE_associated_Golgi_protein(58%) PK_Tyr_Ser-Thr(75%),Pkinase(74%)| 0 1 8 25 603 ENST00000489824.1 ENST00000262291.9 downstream upstream mismatches(1) CTTGAGTGGAACGCTCTTCACACCAGTTGTTCCTAACAGAACCATTCTCATTGCGGCTTTCTTTCCTTGAATTG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15002 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SNARE_associated_Golgi_protein(58%) none 2 4 0 253 603 ENST00000472940.5 ENST00000262291.9 downstream upstream duplicates(1),mismatches(1) CGCAGACGCACTGAGCCTAAGCAGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGgCCGGGgCCgcGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTG...AATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTG...TTCAGCAGCAAACTTGCAACAGACTGGCCTTCTGTTTGTTACTTTCAAAAGGCCCACATGATACAATTAGAGAATTCCCACCGCACAAAAAAAGTTCCTAA aRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|DFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15004 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59914703:+ chr17:57970407-58027935:+ chr17:57992064:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Protein_kinase_domain(14%)| PK_Tyr_Ser-Thr(8%),Pkinase(8%)| 0 1 1 370 402 ENST00000225577.9 ENST00000262291.9 downstream upstream mismatches(1) CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAG___GTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAG|AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCC...ACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCC LRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKK|KIFVIITFSKHIVEQMVAFIGAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE|FALSE,FALSE,TRUE|FALSE,TRUE|FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE,TRUE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15005 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59931722:+ chr17:57970407-58027935:+ chr17:58009083:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59811670:+ chr17:57784553-57919616:+ chr17:57889031:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Protein_kinase_domain(53%)|SNARE_associated_Golgi_protein(32%) Kinase-like(1%),PK_Tyr_Ser-Thr(80%),Pkinase(79%)| 0 0 0 507 445 ENST00000225577.9 ENST00000262291.9 downstream upstream mismatches(1) AGAATATCATGCTTAATCACCAAG|ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGC...CAGAAAATTTTTaTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCC NIMLNHQ|dsksfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15007 SCNN1A::ENSG00000284523 ENSG00000111319.13::ENSG00000284523.2 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCNN1A ENSG00000111319.13 protein_coding - - chr12:6346843-6377730:- chr12:6354438:- chr12:6456009-6486896:- chr12:6463604:- ENSG00000284523 ENSG00000284523.2 lncRNA - - chr7:99252452-99325826:- chr7:99319444:- chr7:98850075-98923449:- chr7:98917067:- chr12:6350454,chr12:6350462 chr7:99323311,chr7:99323316 NA NA chr12:6459620,chr12:6459628 chr7:98920934,chr7:98920939 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Amiloride-sensitive_sodium_channel(76%)| ASC(76%)| 0 4 16 118 15 ENST00000543768.1 ENST00000640784.1 upstream downstream duplicates(2),mismappers(3),mismatches(3) CTGGACAGACTTGGGGGCGATTATGGCGACTGCACCAAGAATGGCAGTGATGTTCCTGTTGAGAACCTTTACCCTTCAAAGTACACACAGCAG___GTGTGTATTCACTCCTGCTTCCAGGAGAGCATGATCAAGGAGTGTGGCTGTGCCTACATCTTCTATCCGCGGCCCCAGAACGTGGAGTACTGTGACTACAGAAAGCACAGTTCCTGGG|AGATGGGGTCTTGCTGTGTTGCCCAGGGTGGAGTGCAGTGGCTATTCACAGGTGTGAT...___AAGCTTCCAGCCTTCAGATTTGAACTGGGACACTGGCTCTGCAGATTTTGGACTTGCCAGCCTTCATAATTGT___GCTTCTTACCATATCACGCTCCCAAGGAAGATGTTGACAAAAG...___AACCTACACTCCTGT LDRLGGDYGDCTKNGSDVPVENLYPSKYTQQVCIHSCFQESMIKECGCAYIFYPRPQNVEYCDYRKHSSW|emgsccvaqggvqwlftgv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15008 MPZL1::POU2F1 ENSG00000197965.12::ENSG00000143190.23 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1488 FALSE NA FALSE NA MPZL1 ENSG00000197965.12 protein_coding + + chr1:167721192-167791919:+ chr1:167722242:+ chr1:167690429-167761156:+ chr1:167691479:+ POU2F1 ENSG00000143190.23 protein_coding + + chr1:167220876-167427345:+ chr1:167411959:+ chr1:167190113-167396582:+ chr1:167381196:+ chr1:167755395,chr1:167755393 chr1:167402254,chr1:167402249 NA NA chr1:167724632,chr1:167724630 chr1:167371491,chr1:167371486 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none |POU2F1_C(24%) 7 2 2 530 54 ENST00000359523.7 ENST00000367866.7 downstream upstream mismatches(1) TGGAGAGCCGCGGCTGGGACCGGAGTGGGGAGCGCGGCGTGGAGGTGCCACCCGGCGCGGGTGGCGGAGAGATCAGAAGCCTCTTCCCCAAGCCGAGCCAACCTCAGCGGGGACCCGGGCTCAGGGACGCGGCGGCGGCGGCGGCGACTGCAGTGGCTGGACGATGGCAGCGTCCGCCGGAGCCGGGGCGGTGATTGCAGCCCCAGACAGCCGGCGCTGGCTGTGGTCGGTGCTGGCGGCGGCGCTTGGGCTCT|GCACTTCAGACACCACCTCCAACAACACAGCAACCGTGATTTCCACAGCGCCTCCAGCTTCCTCAGCAGTCACGTCCCCCTCTCTGAGTCCCTCCCCTTCTGCCTCAGCCTCCACCTCCGAGGCATCCAGTGCCAGTGAGACCAGCACAACACAGACCACCTCCACTCCTTTGTCCTCCCCTCTTGGGACCAGCCAGGTGATGGTGACAGCATCAGGTTTGCAAACAGCAGCAGCTGCTGCCCTTCAAGGAGC MAASAGAGAVIAAPDSRRWLWSVLAAALGL|cTSDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTTSTPLSSPLGTSQVMVTASGLQTAAAAALQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15010 OSBPL6::ENSG00000239498 ENSG00000079156.17::ENSG00000239498.1 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL6 ENSG00000079156.17 protein_coding + + chr2:178194481-178402893:+ chr2:178306286:+ chr2:179059208-179267620:+ chr2:179171013:+ ENSG00000239498 ENSG00000239498.1 lncRNA + - chr2:220105656-220450778:+ chr2:220354525:- chr2:220970377-221315499:+ chr2:221219246:- chr2:178323304 chr2:220392585 NA NA chr2:179188031 chr2:221257306 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 5 3 2 15 5 ENST00000190611.9 unknown downstream downstream none TGAAAAATCATCTACTTCTTTGTTTGTGGATTTGAGAGAAGATTGGGATGGTCTTAAGTGCATAAAACGAGACTCTAACTGCAGCGATGAGTTCAGATGAGAAGGGCATTTCCCCTGCTCATAAAACATCCACTCCAACCCATAGAAGTGCCTCCTCTTCAACATCCTCCCAAAGGGACAGTAGGCAG|AGGAACTCAGAAGCCAGAAAAAATGACCAAGACACAGTCTCCATCTTCAAAAGGTCACAGTCCTTCAGAGAAGACAGACAACTAAATAAATTCCAGCTGACTATAATGTAAATATGTATAGAATCATATGGAAGCATACAAGAAAAAGCAATGATTTACTTGACAGACAATGGAAATTTCAAAGCAAAAAAGTATATTTCATATGGTTATTAGGGGATGAGCACAAC MSSDEKGISPAHKTSTPTHRSASSSTSSQRDSRQ|rnsearkndqdtvsifkrsqsfredrqlnkfqltim* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15011 CDC73::ENSG00000286541 ENSG00000134371.14::ENSG00000286541.1 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2634 TRUE 1015 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193212477:+ chr1:193091113-193223945:+ chr1:193181607:+ ENSG00000286541 ENSG00000286541.1 lncRNA - - chr1:199040501-199080975:- chr1:199054275:- chr1:199009630-199050104:- chr1:199023404:- chr1:193215823,chr1:193215824 chr1:199060063,chr1:199060062 NA NA chr1:193184953,chr1:193184954 chr1:199029192,chr1:199029191 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(16%)| B3GALT2_N(100%),CDC73_C(0%),CDC73_N(100%),Galactosyl_T(100%)| 1 1 7 422 1 ENST00000367435.5 unknown downstream downstream none CGGAAGACTCAGACTCCTGCAGCCCAGCCAGTACCAAGACCAG___TTTCTCAAGCAAGACCTCCCCCAAATCAGAAGAAAG___GATCTCGAACACCCATTATCATAATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAA|CTTAACAAACTGGAAAATTTGAAGTAGCATCATGATCATCATCACCAAAAGCAATAACAGCAGCATAAGCACAATTTACATTAAAATGCC RKTQTPAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLn|ltnwki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 15012 CDC73::ENSG00000286541 ENSG00000134371.14::ENSG00000286541.1 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2634 TRUE 1015 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193212477:+ chr1:193091113-193223945:+ chr1:193181607:+ ENSG00000286541 ENSG00000286541.1 lncRNA - - chr1:199040501-199080975:- chr1:199041883:- chr1:199009630-199050104:- chr1:199011012:- chr1:193215823,chr1:193215824 chr1:199060063,chr1:199060062 NA NA chr1:193184953,chr1:193184954 chr1:199029192,chr1:199029191 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(16%)| B3GALT2_N(100%),CDC73_C(0%),CDC73_N(100%),Galactosyl_T(100%)| 1 1 5 422 7 ENST00000367435.5 ENST00000660854.1 downstream downstream none GGAGGGTGCATCTGCCCGGAAGACTCAGACTCCTGCAGCCCAGCCAGTACCAAGACCAG___TTTCTCAAGCAAGACCTCCCCCAAATCAGAAGAAAG___GATCTCGAACACCCATTATCATAATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAA|CCCTTCATCTCTCCGTTTCTTGGTCACCAGTTGAGTACAAACTCTCTGGTTTTAAAATGTTATCTATGTAAATTCTTCTGCCACAGCTGGACAAGATGCATTCAAGAGTTTTTCTGTTTCCTGTGTGGTGAAGCAGCTTTCCCCTAACGACTATTTCCCATCAGTACCACAAAGACCTACCTTCTTAACCACTGTTTCAACGGTTTCTTACCACTTCCACCTTTCTGTAGAACATTTCATTTGGAAGGAG EGASARKTQTPAAQPVPRPVSQARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLn|psslrflvts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 15014 SMURF2::ARHGAP27P1-BPTFP1-KPNA2P3 ENSG00000108854.16::ENSG00000215769.8 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64598382:- chr17:62538400-62658425:- chr17:62594500:- ARHGAP27P1-BPTFP1-KPNA2P3 ENSG00000215769.8 lncRNA - - chr17:64749663-64781707:- chr17:64751956:- chr17:62745781-62777825:- chr17:62748074:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none C2_domain(60%)| C2(92%)| 4 3 0 193 178 ENST00000262435.14 ENST00000578492.5 upstream downstream none GGAGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGACAG___...AAAAAACCTGGTGAAAAAGGATTTTTTCC___GACTTCCTGATCCATTTGCTAAGGTGGTGGTTGATGGATCTGGGCAATGCCATTCTACAGATACTGTGAAGAATACGCTTGATCCAAAGTGGAATCAGCATTATGACCT|GCTGCTGAGAAACTAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGCGTAGACAAAATTGAAGCTCTACAAAACCATGAAAATGAGTCTGTATATAAGGCTTCATTAAGCTTAACTGAGAAGTATTTCTCTGTAGAGGTGAGTAATGGATGGTAATATTAA KNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDl|llrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15015 SMURF2::KPNA2P3 ENSG00000108854.16::ENSG00000266820.1 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64598382:- chr17:62538400-62658425:- chr17:62594500:- KPNA2P3 ENSG00000266820.1 transcribed_unprocessed_pseudogene - - chr17:64749918-64758603:- chr17:64751956:- chr17:62746036-62754721:- chr17:62748074:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none C2_domain(60%)| C2(92%)| 4 3 0 193 178 ENST00000262435.14 ENST00000584190.1 upstream downstream none GGAGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGACAG___...AAAAAACCTGGTGAAAAAGGATTTTTTCC___GACTTCCTGATCCATTTGCTAAGGTGGTGGTTGATGGATCTGGGCAATGCCATTCTACAGATACTGTGAAGAATACGCTTGATCCAAAGTGGAATCAGCATTATGACCT|GCTGCTGAGAAACTAGGTGAAACTGAGAAACTTAGTATAATGATTGAAGAATGTGGAGGCGTAGACAAAATTGAAGCTCTACAAAACCATGAAAATGAGTCTGTATATAAGGCTTCATTAAGCTTAACTGAGAAGTATTTCTCTGTAGAGGTGAGTAATGGATGGTAATATTAA KNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDl|llrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15016 ROCK1::ENSG00000279668 ENSG00000067900.9::ENSG00000279668.4 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2635 TRUE 1016 ROCK1 ENSG00000067900.9 protein_coding - - chr18:20944612-21111813:- chr18:20966917:- chr18:18524573-18691774:- chr18:18546878:- ENSG00000279668 ENSG00000279668.4 lncRNA - - chr17:33827699-34079100:- chr17:33828661:- chr17:32154718-32406119:- chr17:32155680:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Protein_kinase_domain(100%),Rho_Binding(100%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rho_Binding(100%)| 2 0 4 233 30 ENST00000635540.2 ENST00000659958.1 upstream downstream mismatches(1) CAGATGGTAGTGAAACATCAGAAGGAACTGAATGACATGCAAGCG___CAATTGGTAGAAGAATGTGCACATAGGAATGAGCTTCAGATGCAGTTGGCCAGCAAAGAGAGTGATATTGAGCAATTGCGTGCTAAACTTTTGGACCTCTCGGATTCTACAAGTGTTGCTAGTTTTCCTAGTGCTGATGAAACTGATGGTAACCTCCCAG|TTTACGTGCTCTCACATCATCTTCACATTTCACTCCAAGTTCATCTCCGCATTCACATCCCATTCCAAGAGCCATCAGGAGACGAGGAAGCGCCGAGTCCACCAAGCAATTTCACCAGCTCTTCATATATTCTTCTTGGAGGTTTCATGCCATAATCTTACCTCTTTCTTGTGTATTTAGGTCATACAAGTTACTGATGAGGTGACAAGATGGtAG...AAAAGGTTTCCAGgTAGATTTGAtCTCgTTCCATATgGTGCACCAATGATGTCACATGGCCCTCTCATCCCAACCCCTAGAGGACCCTCAGTGAATCAA QMVVKHQKELNDMQAQLVEECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASFPSADETDGNLP|vyvlshhlhislqvhlrihipfqepsgdeeapsppsnftsssyillggfmp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 1 AGC DMPK ROCK Q13464 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho associated coiled-coil-containing protein kinase 1 2 pancreatic ductal adenocarcinoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 15017 ROCK1::ENSG00000279668 ENSG00000067900.9::ENSG00000279668.4 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2635 TRUE 1016 ROCK1 ENSG00000067900.9 protein_coding - - chr18:20944612-21111813:- chr18:20966917:- chr18:18524573-18691774:- chr18:18546878:- ENSG00000279668 ENSG00000279668.4 lncRNA - - chr17:33827699-34079100:- chr17:33828481:- chr17:32154718-32406119:- chr17:32155500:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Protein_kinase_domain(100%),Rho_Binding(100%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rho_Binding(100%)| 1 0 1 233 5 ENST00000635540.2 ENST00000659958.1 upstream downstream none AGAATGTGCACATAGGAATGAGCTTCAGATGCAGTTGGCCAGCAAAGAGAGTGATATTGAGCAATTGCGTGCTAAACTTTTGGACCTCTCGGATTCTACAAGTGTTGCTAGTTTTCCTAGTGCTGATGAAACTGATGGTAACCTCCCAG|GTCATACAAGTTACTGATGAGGTGACAAGATGGAAGATCACTTCTCACAAAGATGATAC ECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASFPSADETDGNLP|ghtsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 1 AGC DMPK ROCK Q13464 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho associated coiled-coil-containing protein kinase 1 2 pancreatic ductal adenocarcinoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 15020 MTR::CDC73 ENSG00000116984.15::ENSG00000134371.14 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2637 TRUE 1017 MTR ENSG00000116984.15 protein_coding + + chr1:236795260-236921278:+ chr1:236795737:+ chr1:236958560-237084578:+ chr1:236959037:+ CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193232993:+ chr1:193091113-193223945:+ chr1:193202123:+ chr1:236807864,chr1:236807865 chr1:193215817,chr1:193215815 NA NA chr1:236971164,chr1:236971165 chr1:193184947,chr1:193184945 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(83%) |CDC73_C(46%) 0 3 2 56 363 ENST00000650888.1 ENST00000367435.5 downstream upstream none GTTGCCGCGCCCAGCCCCGAGAGAGGCCCTAGGGCGCTGCGGGCTTTCGGGGTCCGCAGTCCCCCCGCGACGCGAGCCAACGGGAGGCGTCAAAAGACCCGGGaCTTG...CGACAACATGTCACCCGCGCTCCAAGACCTGTCGCAACCCG|ATTTGTCCCATCAGATGAAAAGAAGAAACAAGGTTGTCAACGAGAAAATGAAACTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGTAGTAGACCAGCCCCTTAAACTTATGCCTCAAGACTG___GGA...ATGGCAGTTCAAAGGTTGGCCATGGCTTTTGCCTGATGGATCACCAGTTGATATATTTGCTAAAA___TTAAAGCCTTCCATCTGAAGTATGATGAAGTTCGTC MSPALQDLSQP|dlshqmkrrnkvvnekmkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift 15021 MTR::CDC73 ENSG00000116984.15::ENSG00000134371.14 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2637 TRUE 1017 MTR ENSG00000116984.15 protein_coding + + chr1:236795260-236921278:+ chr1:236806233:+ chr1:236958560-237084578:+ chr1:236969533:+ CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193232993:+ chr1:193091113-193223945:+ chr1:193202123:+ chr1:236807864,chr1:236807865 chr1:193215817,chr1:193215815 NA NA chr1:236971164,chr1:236971165 chr1:193184947,chr1:193184945 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Homocysteine_S-methyltransferase(26%)|RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(83%) S-methyl_trans(10%)|CDC73_C(46%) 0 2 3 62 363 ENST00000650888.1 ENST00000367435.5 downstream upstream low_entropy(1) CATGATCCAGCGGGAGAAGCTAAACGAAGAACACTTCCGAGGTCAGGAATTTAAAGATCATGCCAGGCCGCTGAAAGGCAACAATGACATTTTAAGTATAA...AACAAATACTTTTAGCAGCACTAGTATTGCCCAAGCTGACTATGGCCTTGAACACTTG|ATTTGTCCCATCAGATGAAAAGAAGAAACAAGGTTGTCAACGAGAAAATGAAACTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGT TNTFSSTSIAQADYGLEHL|icpir* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift 15022 MTR::CDC73 ENSG00000116984.15::ENSG00000134371.14 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2637 TRUE 1017 MTR ENSG00000116984.15 protein_coding + + chr1:236795260-236921278:+ chr1:236803642:+ chr1:236958560-237084578:+ chr1:236966942:+ CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193232993:+ chr1:193091113-193223945:+ chr1:193202123:+ chr1:236807864,chr1:236807865 chr1:193215817,chr1:193215815 NA NA chr1:236971164,chr1:236971165 chr1:193184947,chr1:193184945 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Homocysteine_S-methyltransferase(17%)|RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(83%) S-methyl_trans(0%)|CDC73_C(46%) 0 1 3 63 363 ENST00000650888.1 ENST00000367435.5 downstream upstream none AGCTAAACGAAGAACACTTCCGAGGTCAGGAATTTAAAGATCATGCCAGGCCGCTGAAAGGCAACAATGACATTTTAAGTATAACTCAGCCTGATGTCATTTACCAAATCCATAAG|ATTTGTCCCATCAGATGAAAAGAAGAAACAAGGTTGTCAACGAGAAAATGAAACTCTAATACAAAGAAGAAAAGACCAGATGCAACCAGGGGGCACTGCAATTAGTGTTACAGTACCTTATAGAGTAGTAGACCAG LNEEHFRGQEFKDHARPLKGNNDILSITQPDVIYQIHK|icpir* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift 15025 ROCK1::ASIC2 ENSG00000067900.9::ENSG00000108684.15 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ROCK1 ENSG00000067900.9 protein_coding - - chr18:20944612-21111813:- chr18:20966917:- chr18:18524573-18691774:- chr18:18546878:- ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33828661:- chr17:31340105-32501983:- chr17:32155680:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Protein_kinase_domain(100%),Rho_Binding(100%)|Amiloride-sensitive_sodium_channel(72%) PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rho_Binding(100%)|ASC(71%) 2 0 2 233 30 ENST00000635540.2 unknown upstream downstream none CAGATGGTAGTGAAACATCAGAAGGAACTGAATGACATGCAAGCG___CAATTGGTAGAAGAATGTGCACATAGGAATGAGCTTCAGATGCAGTTGGCCAGCAAAGAGAGTGATATTGAGCAATTGCGTGCTAAACTTTTGGACCTCTCGGATTCTACAAGTGTTGCTAGTTTTCCTAGTGCTGATGAAACTGATGGTAACCTCCCAG|TTTACGTGCTCTCACATCATCTTCACATTTCACTCCAAGTTCATCTCCGCATTCACATCCCATTCCAAGAGCCATCAGGAGACGAGGAAGCGCCGAGTCCACCAAGCAATTTCACCAGCTCTTCATATATTCTTCTTGGAGGTTTCATGCCATAATCTTACCTCTTTCTTG QMVVKHQKELNDMQAQLVEECAHRNELQMQLASKESDIEQLRAKLLDLSDSTSVASFPSADETDGNLP|vyvlshhlhislqvhlrihipfqepsgdeeapsppsnftsssyillggfmp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 1 AGC DMPK ROCK Q13464 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho associated coiled-coil-containing protein kinase 1 2 pancreatic ductal adenocarcinoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 15027 WDR59::LDHD ENSG00000103091.15::ENSG00000166816.15 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2639 TRUE 1018 WDR59 ENSG00000103091.15 protein_coding - - chr16:74871362-75000173:- chr16:74889703:- chr16:74905260-75034071:- chr16:74923601:- LDHD ENSG00000166816.15 protein_coding - - chr16:75111860-75116780:- chr16:75114234:- chr16:75145758-75150678:- chr16:75148132:- chr16:74888746,chr16:74888750 chr16:75114361,chr16:75114362 NA NA chr16:74922644,chr16:74922648 chr16:75148259,chr16:75148260 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none WD_domain__G-beta_repeat(100%)|FAD_linked_oxidases__C-terminal_domain(100%) WD40(100%)|FAD-oxidase_C(100%) 1 1 2 163 8 ENST00000262144.11 ENST00000569876.2 upstream downstream low_entropy(1) CTTGTCCAG___GTTTGGTCGCTGGCTACGGTAGCTACAGATCTTTGCCTTGGTCCGAAATCTGACCCAGATTTGGAAACACCCTGGGCTCGACATCCATTTGGGCGGCAGCTGCTGGAGTCCCT|CTTCGGCTTCTGGCCAGAAATCCCTCATCACACAGCCTGGTACTCACCTTGTGTGTCCC...GGCCTCATCACAGCCACCACCCTGCGCCTGCACCCTGCCCCTGAGGCCACAGTGGCCGCCACGTGTGCGTTCCCCAGTGTCCAGGCTGCTGTGGACAGCACTGTACACATCCTCCAGGCTGCAGTGCCCGTAGCCCGCATTG___AGTTCCTG...CTTCTCCTGGtCCAAGGAGGCCGAGGAGCGCAGCCGGCTTTGGACAGCACGGCACAATGCCTGGTACGCAGCCCTGGCCACGCGGCCAGGCTGCAAG___GGC LVQVWSLATVATDLCLGPKSDPDLETPWARHPFGRQLLESl|fgfwpeiphhtawyspcvs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15028 WDR59::LDHD ENSG00000103091.15::ENSG00000166816.15 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2639 TRUE 1018 WDR59 ENSG00000103091.15 protein_coding - - chr16:74871362-75000173:- chr16:74889703:- chr16:74905260-75034071:- chr16:74923601:- LDHD ENSG00000166816.15 protein_coding - - chr16:75111860-75116780:- chr16:75114165:- chr16:75145758-75150678:- chr16:75148063:- chr16:74888746,chr16:74888750 chr16:75114361,chr16:75114362 NA NA chr16:74922644,chr16:74922648 chr16:75148259,chr16:75148260 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WD_domain__G-beta_repeat(100%)|FAD_linked_oxidases__C-terminal_domain(100%) WD40(100%)|FAD-oxidase_C(100%) 0 2 2 163 17 ENST00000262144.11 ENST00000450168.3 upstream downstream none CTTGTCCAG___GTTTGGTCGCTGGCTACGGTAGCTACAGATCTTTGCCTTGGTCCGAAATCTGACCCAGATTTGGAAACACCCTGGGCTCGACATCCATTTGGGCGGCAGCTGCTGGAGTCCCT|GAAGAGTGCAGCCGGCTACAACCTCACGGGGCTCTTCGTGGGCTCCGAGGGGACGCTGGGCCTCATCACAGCCACCcCCCTGCGCCTGCACCCTGCCCCTGAGGCCACAGTGGCCGCCACGTGTGCGTTCCCCAGTGTCCAGGCTGCTGTGGACAGCACTGTACACATCCTCCAGGCTGCAGTGCCCGTAGCCCGCATTG___GTACAGCAAGCTGAATTGCTTAGTGGCGCCCACACTCTTCCTGGAGTTCCATGGCTCCCAGCAGGCACcGG LVQVWSLATVATDLCLGPKSDPDLETPWARHPFGRQLLESl|KSAAGYNLTGLFVGSEGTLGLITATpLRLHPAPEATVAATCAFPSVQAAVDSTVHILQAAVPVARIgtas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15039 CDC73::LINC01221 ENSG00000134371.14::ENSG00000235492.1 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193212477:+ chr1:193091113-193223945:+ chr1:193181607:+ LINC01221 ENSG00000235492.1 lncRNA + - chr1:199016133-199076735:+ chr1:199047141:- chr1:198985262-199045864:+ chr1:199016270:- chr1:193215823,chr1:193215824 chr1:199060063,chr1:199060062 NA NA chr1:193184953,chr1:193184954 chr1:199029192,chr1:199029191 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none Paf1_complex_subunit_CDC73_N-terminal(100%),RNA_pol_II_accessory_factor__Cdc73_family__C-terminal(16%)| B3GALT2_N(100%),CDC73_C(0%),CDC73_N(100%),Galactosyl_T(100%)| 4 0 0 422 1 ENST00000367435.5 unknown downstream downstream none GTTTTGTGGATGCTGAGGTAGATGTGACCCGAGATATTGTCAGCAGAGAGAGAGTATGGAGGACACGAACAACTATCTTACAAAGCACAGGAAAG___AATTTT...GAAAGATTCAAAGGAAAAGAAG___AAACGGAAGGCTTCAAAATTGACACTATGGGAACCTACCATGGTATGACACTGAAATCTGTAACG___GAGGGTGCATCTGC...CTCAAGCAAGACCTCCCCCAAATCAGAAGAAAG___GATCTCGAACACCCATTATCATAATTCCTGCAGCTACCACCTCTTTAATAACCATGCTTAATGCAAAAGACCTTCTACAGGACCTGAA|GCTGGTTAAGAACCATTGTTGGGGAGCTAGTGGACTCGTTTGGAGGTAAGCGGACATACTGGCCTTATGAATTAGCAGA QARPPPNQKKGSRTPIIIIPAATTSLITMLNAKDLLQDLk|lvknhcwgasglvwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1278 chr1:193136503-193136583:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 15047 SP2-AS1::OSBPL7 ENSG00000234494.8::ENSG00000006025.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47918452:- chr17:45974696-46018776:- chr17:45995818:- OSBPL7 ENSG00000006025.13 protein_coding - - chr17:47807372-47821803:- chr17:47815352:- chr17:45884738-45899169:- chr17:45892718:- chr17:47904889,chr17:47904891 chr17:47815658,chr17:47815657 NA NA chr17:45982255,chr17:45982257 chr17:45893024,chr17:45893023 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |Oxysterol-binding_protein_(100%) |Oxysterol_BP(100%) 2 1 1 45 136 ENST00000585280.5 ENST00000007414.8 upstream downstream none AGGAAATGCTGTCACCGCGGTTAACACGCACGTGGAGGTTGGTTAAAG___GGAAGACCTGGGTTTTAGTCCTGTCTCCATCAACCTCAAGAAATGGGACCTCATGGAAGGGAGGGGAGGCAATGCCGAGGATGTGCTCCTGAGCAGGTGCCACAATTCTTCACCTGTAAG|CAAGAAGCTCTGTACATGAAGGGGCGCGAGCTCACCCCCCAGCTATCGCAGACCAGCATCCTGTCCCTTGCTGATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15065 BCAM::PPARD ENSG00000187244.12::ENSG00000112033.14 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BCAM ENSG00000187244.12 protein_coding + + chr19:44809071-44821421:+ chr19:44809206:+ chr19:45312328-45324678:+ chr19:45312463:+ PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35423946:+ chr6:35310335-35395968:+ chr6:35391723:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%) |Hormone_recep(100%) 1 1 0 878 383 ENST00000611077.5 ENST00000418635.6 downstream upstream none CCGCAGCGGCCGAGCTGCAGCCCGGGCTCAGTCTCCGCCGCCGCCGTGAACATGGAGCCCCCGGACGCACCGGCCCAGGCGCGCGGGGCCCCGCGGCTGCTGTTGCTCGCAGTCCTGCTGGCGGCGCACCCAG|CTATCCGTTTTGGTCGGATGCCGGAGGCTGAGAAGAGGAAGCTGGTGGCAGGGCTGACTGCAAAtGAGGGGAGCC...TGCACGTCTTCTACCGCTGCCAGTGCACCACAGTGGAGACCGTGCGGGAGCTCACTGAGTTCGCCAAGAGCATCCCCAGCTTCAGCAGCCTCTTCCTCAAC MEPPDAPAQARGAPRLLLLAVLLAAHP|aIRFGRMPEAEKRKLVAGLTANEGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15075 RABL6::TRAF2 ENSG00000196642.19::ENSG00000127191.18 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2643 TRUE 1019 RABL6 ENSG00000196642.19 protein_coding + + chr9:136807943-136841187:+ chr9:136832370:+ chr9:139702395-139735639:+ chr9:139726822:+ TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136908070:+ chr9:139776364-139821059:+ chr9:139802522:+ chr9:136833147,chr9:136833104,chr9:136833098 chr9:136900831,chr9:136900831,chr9:136900822 NA NA chr9:139727599,chr9:139727556,chr9:139727550 chr9:139795283,chr9:139795283,chr9:139795274 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Ras_of_Complex__Roc__domain_of_DAPkinase(100%)|TNF_receptor-associated_factor_BIRC3_binding_domain(100%),TRAF-type_zinc_finger(100%) DLIC(100%),Ras(100%),Roc(100%)|MATH(100%),TRAF_BIRC3_bd(100%),zf-TRAF(100%) 123 102 127 2149 1077 ENST00000311502.12 ENST00000247668.7 downstream upstream duplicates(86),mismappers(11),mismatches(22) ACCGGGACATGGGCGAGCACCGAGTCATCCTGCCGGACGACGTGCGTGACTTCATCGACAACCTGGACAG___ACCTCCAGGTTCCTCCTACTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTAAAGTACCTTCATAAGTTCTTCAATATCCCATTTTTGCAGCTTCAG|AGCTGCCACGAAGGCCGCTGCCCGCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG___GCGCACCACGAGGTCTGCCCCAAGTTCCCCTTAACTTGTGACGGCTGCGGCAAGAAGAAGATCCCCCGGGAGAAG___TTTC RDMGEHRVILPDDVRDFIDNLDRPPGSSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQ|SCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4292 chr9:136830957-136831023:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15076 RABL6::TRAF2 ENSG00000196642.19::ENSG00000127191.18 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2643 TRUE 1019 RABL6 ENSG00000196642.19 protein_coding + + chr9:136807943-136841187:+ chr9:136831861:+ chr9:139702395-139735639:+ chr9:139726313:+ TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136908070:+ chr9:139776364-139821059:+ chr9:139802522:+ chr9:136833147,chr9:136833104,chr9:136833098 chr9:136900831,chr9:136900831,chr9:136900822 NA NA chr9:139727599,chr9:139727556,chr9:139727550 chr9:139795283,chr9:139795283,chr9:139795274 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ras_of_Complex__Roc__domain_of_DAPkinase(100%)|TNF_receptor-associated_factor_BIRC3_binding_domain(100%),TRAF-type_zinc_finger(100%) DLIC(100%),Ras(100%),Roc(100%)|MATH(100%),TRAF_BIRC3_bd(100%),zf-TRAF(100%) 1 0 29 2662 1077 ENST00000311502.12 ENST00000247668.7 downstream upstream duplicates(7),mismatches(9) CCTGGATGCTGAGTTCCTGGACGTGTACAAGAACTGCAACGGGGTGGTCATGATGTTCGACATTACCAAGCAGTG___GACCTTCAATTACATTCTCCGGGAGCTTCCAAAAGTGCCCACCCACGTGCCAGTGTGCGTGCTGGGgAACTACCGGGACATGGGCGAGCACCGAGTCATCCTGCCGGACGACGTGCGTGACTTCATCGACAACCTGGACAG|AGCTGCCACGAAGGCCGCTGCCCGCTCATGCTGACCGAATGTCCCGCGTGCAAAGGCCTGGTCCGCCTTGGTGAAAAGGAGCGCCACCTGGAGCACGAGTGCCCGGAGAGAAGCCTGAGCTGCCGGCATTGCCGGGCACCCTGCTGCGGAGCAGACGTGAAG___GCGCACCACGAGGTCTGCCCCAAGTTCCCCTTAACTTGTGACGGCTGCGGCAAGAAGAAGATCCCCC LDAEFLDVYKNCNGVVMMFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDr|aatkaaarsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4292 chr9:136830957-136831023:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15077 RABL6::TRAF2 ENSG00000196642.19::ENSG00000127191.18 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2643 TRUE 1019 RABL6 ENSG00000196642.19 protein_coding + + chr9:136807943-136841187:+ chr9:136825826:+ chr9:139702395-139735639:+ chr9:139720278:+ TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136909920:+ chr9:139776364-139821059:+ chr9:139804372:+ chr9:136833147,chr9:136833104,chr9:136833098 chr9:136900831,chr9:136900831,chr9:136900822 NA NA chr9:139727599,chr9:139727556,chr9:139727550 chr9:139795283,chr9:139795283,chr9:139795274 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ras_of_Complex__Roc__domain_of_DAPkinase(100%)|TNF_receptor-associated_factor_BIRC3_binding_domain(100%),TRAF-type_zinc_finger(100%) DLIC(100%),Ras(100%),Roc(100%)|MATH(100%),TRAF_BIRC3_bd(100%),zf-TRAF(100%) 0 1 1 2977 885 ENST00000311502.12 ENST00000247668.7 downstream upstream none CCAGCATCCACTGGAGCTACAAGA___CCACGGATGACATCGTGAAGGTTGAAGTCTGGGATGTAGTAGACAAAG|GCGCACCACGAGGTCTGCCCCAAGTTCCCCTTAACTTGTGACGGCTGCGGCAgGcAG...AGAGCCACGCGGGGTCAGAGCTCCTGCAGAGGTGCGAGAGCCTGGAGAAGAAGACGGCCACTTTTGAGAACATTGTCTGCGTCCTGAACCGGGAGGTGGAG SIHWSYKTTDDIVKVEVWDVVDK|gaprglpqvplnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15078 PTPN23::ELP6 ENSG00000076201.16::ENSG00000163832.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1490 TRUE 2644 TRUE 1020 PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47396217:+ chr3:47422501-47454925:+ chr3:47437707:+ ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47511226:- chr3:47537130-47555202:- chr3:47552716:- chr3:47399211,chr3:47399212 chr3:47511632,chr3:47511631 NA NA chr3:47440701,chr3:47440702 chr3:47553122,chr3:47553121 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none BRO1-like_domain(12%)|Elongation_complex_protein_6(93%) BRO1(56%)|ELP6(86%) 115 88 52 432 385 ENST00000602307.5 ENST00000296149.9 downstream downstream duplicates(88),low_entropy(1),mismatches(17) CGGGTGGCCGGCGGGTGCCAGCCGCCATGGAGGCCGTGCCCCGCATGCCCATGATCTGGCTGGACCTGAAGGAGGCCGGTGACTTTCACTTCCAGCCAGCTGTGAAGAAG___TTTGTCCTGAAGAATTATGGAGAGAACCCAGAAGCCTACAATGAAGAACTGAAGAAGCTGGAGTTGCTCAGACAG|GGGAAACTGACTCTACTCTGTGATGCCAAGACAGATGGGAGTTTCCTTGTACACCACTTTCTCTCCTTCTATCTCAAAG___CTAATTGTAAAGTCTGCTTTGTGGCACTCATCCAGTCCTTCAGCCACTACAGTATCGTGGGACAGAAGCTG___GGTGTCAGCCTGACCATGGCGCGGGAGC MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQ|GKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15079 ELP6::PTPN23 ENSG00000163832.16::ENSG00000076201.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1491 TRUE 2645 TRUE 1021 ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47513537:- chr3:47537130-47555202:- chr3:47555027:- PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47404652:+ chr3:47422501-47454925:+ chr3:47446142:+ chr3:47511629,chr3:47511631 chr3:47399210,chr3:47399208 NA NA chr3:47553119,chr3:47553121 chr3:47440700,chr3:47440698 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Elongation_complex_protein_6(6%)|ALIX_V-shaped_domain_binding_to_HIV_(100%),BRO1-like_domain(87%),Protein-tyrosine_phosphatase(100%) ELP6(0%)|ALIX_LYPXL_bnd(100%),BRO1(12%),Y_phosphatase(100%) 20 10 19 150 111 ENST00000296149.9 ENST00000265562.5 upstream upstream duplicates(9),mismatches(2) AGCCGGGCTGTCGGGTGTGTTTTGCTCTCCAGCCTCCGTCGTCTCTGCAGCACTCCGGGTTCTCCTCCAGAGCGCTAGTCCCAGGAGCTCGGAATGTTCGTGGAACTTAATAACCTGCTTAACACCACCCCCGACAGGGCGGAGCAG|AATGCTGTCCGTGTCCCACGAGACTTTGAGGGCTGTAGTGTCCTCCGCAAGTACCTCGGCCAGCTTCATTACCTGCAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGTCCCTGTCACCTG___GACAGAGATCTTCTCAGGCAAGTCTGTGGCCCATGAGGACATCAAGTACGAGCAGGCCTGTATTCTCTACAACCTTG___GAGCGCTGCACTCCATGCTGG MFVELNNLLNTTPDRAEQ|NAVRVPRDFEGCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILYNLGALHSML NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15080 ELP6::PTPN23 ENSG00000163832.16::ENSG00000076201.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2645 TRUE 1021 ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47513191:- chr3:47537130-47555202:- chr3:47554681:- PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47404652:+ chr3:47422501-47454925:+ chr3:47446142:+ chr3:47511629,chr3:47511631 chr3:47399210,chr3:47399208 NA NA chr3:47553119,chr3:47553121 chr3:47440700,chr3:47440698 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none Elongation_complex_protein_6(6%)|ALIX_V-shaped_domain_binding_to_HIV_(100%),BRO1-like_domain(87%),Protein-tyrosine_phosphatase(100%) ELP6(2%)|ALIX_LYPXL_bnd(100%),BRO1(12%),Y_phosphatase(100%) 1 1 19 35 111 ENST00000414236.5 ENST00000265562.5 upstream upstream duplicates(3),mismatches(2) GGCGCGGTGGCTCACCCCTGTAATCCCAGCAGTTTGGGAGGCCGAGGCGGGTGCATCATCTAAGGTCAAGAGTTCGAGACAAGTCTGGCCAAGATG|AATGCTGTCCGTGTCCCACGAGACTTTGAGGGCTGTAGTGTCCTCCGCAAGTACCTCGGCCAGCTTCATTACCTGCAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGTCCCTGTCACCTG___GACAGAGATCTTCTCAGGCAAGTCTGTGGCCCATGAGGACATCAAGTACGAGCAGGCCTGTATTCTCTACAACCTTG___GAGCGCTGCACTCCATGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15081 PTPN23::ELP6 ENSG00000076201.16::ENSG00000163832.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2644 TRUE 1020 PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47396217:+ chr3:47422501-47454925:+ chr3:47437707:+ ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47504448:- chr3:47537130-47555202:- chr3:47545938:- chr3:47399211,chr3:47399212 chr3:47511632,chr3:47511631 NA NA chr3:47440701,chr3:47440702 chr3:47553122,chr3:47553121 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none BRO1-like_domain(12%)|Elongation_complex_protein_6(73%) BRO1(56%)|ELP6(47%) 5 4 11 432 577 ENST00000602307.5 ENST00000296149.9 downstream downstream duplicates(4),mismatches(2) CCGCCATGGAGGCCGTGCCCCGCATGCCCATGATCTGGCTGGACCTGAAGGAGGCCGGTGACTTTCACTTCCAGCCAGCTGTGAAGAAG___TTTGTCCTGAAGAATTATGGAGAGAACCCAGAAGCCTACAATGAAGAACTGAAGAAGCTGGAGTTGCTCAGACAG|GGTGTCAGCCTGACCATGGCGCGGGAGCGTGGGCAGCTTGTGTTCCTTGAGGGACTCAAGTCTGCAGTGGACGTCGTCTTCCAGGCTCAAAAGGAGCCACACCCCCTGCAGTTTCTCAG___GGAGGCTAATGCTGGGAACTTGAAACCATTGTTTGAGTTTGTACGGGAGGCCCTGAAGCCAGTAGACAGTGGAGAGGCTCGGTGGACGTACCCGGTGCTGTTGGTGGACGACCTCAGTGTGCTCCTGAGCCTGGGCATGGGGGCGGTGGCTGTGCTAGACTTCATTCACTACTGCAGAGCCACCGTGTGCTGGGAACTAAAG MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQ|GVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15082 PRPF6::HUNK ENSG00000101161.8::ENSG00000142149.9 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1492 FALSE NA FALSE NA PRPF6 ENSG00000101161.8 protein_coding + + chr20:63981132-64033100:+ chr20:63981316:+ chr20:62612485-62664453:+ chr20:62612669:+ HUNK ENSG00000142149.9 protein_coding + + chr21:31873020-32044633:+ chr21:31958843:+ chr21:33245333-33416946:+ chr21:33331155:+ chr20:63982031,chr20:63982031 chr21:31949909,chr21:31949906 NA NA chr20:62613384,chr20:62613384 chr21:33322221,chr21:33322218 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none PRP1_splicing_factor__N-terminal(7%)|Protein_kinase_domain(27%) PRP1_N(0%)|Kinase-like(0%),PK_Tyr_Ser-Thr(10%),Pkinase(10%) 8 6 6 467 53 ENST00000266079.5 ENST00000270112.7 downstream upstream duplicates(5),low_entropy(1),mismatches(1) GGCGACACTTTGCTACGGAGTGCATCGGACGTCGAAGCCTAGAGTCTCTGCGTCTTTCCCTCTTCCGCTGCCTCATTCCTTTCCTTCCTAGCCTTGGTCGTCGCCGCCACCATGAACAAGAAGAAGAAACCGTTCCTAGGGATGCCCGCGCCCCTCGGCTACGTGCCGGGGCTGGGCCGGGG|AGGTGTGAACATGTATGCCATGTTGACCGGGACGCTGCCTTTCACGGTGGAGCCTTTCAGCCTGAGGGCTTTGTACCAGAAGATGGTAGACAAAGAAATGAACCCCCTCCCCACTCAGCTCTCCACAG___GTGCCATCAGTTTCCTGCGCTCTCTCCTGGAACCGGATCCTGTGAAGAGGCCAAATATTCAGCAGGCACTGGCGAATCGCTGGCTTAATGAGAATTACACGGGCAAAGTGCCCTG MNKKKKPFLGMPAPLGYVPGLGRg|GVNMYAMLTGTLPFTVEPFSLRALYQKMVDKEMNPLPTQLSTGAISFLRSLLEPDPVKRPNIQQALANRWLNENYTGKVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Hormonally up-regulated neu tumor-associated kinase CAMK CAMKL HUNK P57058 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15083 DHX30::SMARCC1 ENSG00000132153.15::ENSG00000173473.11 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47847001:+ chr3:47844399-47891685:+ chr3:47888491:+ SMARCC1 ENSG00000173473.11 protein_coding - + chr3:47585269-47782106:- chr3:47761500:+ chr3:47626759-47823596:- chr3:47802990:+ chr3:47847176,chr3:47847175 chr3:47758743,chr3:47758739 NA NA chr3:47888666,chr3:47888665 chr3:47800233,chr3:47800229 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none DEAD/DEAH_box_helicase(100%)| DEAD(100%)| 3 8 4 638 30 ENST00000445061.6 unknown downstream upstream duplicates(5),mismatches(1) CGTGAGCCACGTCATCGTGGATGAGGTGCATGAGCGGGACGTGAACACAGACTTTCTGCTGATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCGGCCCTGCG...CGCTTCTCCCGATACTTTGGTGGCTGCCCCGTCATCAAGGTGCCTGGCTTCATGTACCCAGTCAAGGAGCACTACCTAGAGGACATCCTGGCCAAGTTGGGCAAGCACCAGTACCTGCACCGGCACCGGCACCATGAG|GATAAATCCCATGTTCTACAGAGATCTGTGCCTCAGTCTCAAGTCTCTCAAGCTATTCCCTCCCTGCTAGATTGGACCTGATGGATGATGACAACTCAAGTGACTACGACTGCTGATTTCTTTCACGTAAGTCCATCCTTTTATTCTTGCTTCCAAGACCTATATGCTAATCTGTTTTCTC...___GTTGGAGTGCAATGGCATCATCTCAGCTCACTGCAAC RFSRYFGGCPVIKVPGFMYPVKEHYLEDILAKLGKHQYLHRHRHHE|dkshvlqrsvpqsqvsqaipslldwt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15085 MECOM::EZH2 ENSG00000085276.19::ENSG00000106462.12 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2646 TRUE 1022 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381187:- chr3:168801287-169381563:- chr3:169098975:- EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148847305:- chr7:148504349-148581413:- chr7:148544397:- chr3:169286081,chr3:169286084 chr7:148863922,chr7:148863922 NA NA chr3:169003869,chr3:169003872 chr7:148561014,chr7:148561014 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |CXC_domain(100%),Polycomb_repressive_complex_2_tri-helical_domain(100%),SET_domain(100%),WD_repeat_binding_protein_EZH2(100%) |EZH2_WD-Binding(100%),PRC2_HTH_1(100%),SET(100%),preSET_CXC(100%) 4 6 2 37 303 ENST00000651503.2 ENST00000320356.7 upstream downstream duplicates(2),mismatches(1) CTACATCCCTGATGATATCCCCATTCCTGCTGAGTTTGAACTTCGAGAGTCAAATATGCCTGGGGCAGGACTAGGAATATGGACCAAAAGGAAGATCGAAGTAGGTGAAAAGTTTGGGCCTTATGTGGGAGAGCAGAGGTCAAACCTGAAAGACCCCAGTTATGGATGGGAG|AATAATCATGGGCCAGACTGGGAAGAAATCTGAGAAGGGACCAGTTTGTTGGCGGAAGCGTGTAAAATCAGAGTACATGCGACTGAGACAGCTCAAGAGGTTCAGACGAGCTGATGAAGTAAAG___AGTATGTTTAGTTCCAATCGTCAGAAAATTTTGGAAAGAACGGAAATCTTAAACCAAGAATGGAAACAGCGAAGGATACAGC YIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWE|nnhgpdweei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense 15086 MECOM::EZH2 ENSG00000085276.19::ENSG00000106462.12 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2646 TRUE 1022 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381187:- chr3:168801287-169381563:- chr3:169098975:- EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148846598:- chr7:148504349-148581413:- chr7:148543690:- chr3:169286081,chr3:169286084 chr7:148863922,chr7:148863922 NA NA chr3:169003869,chr3:169003872 chr7:148561014,chr7:148561014 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |CXC_domain(100%),Polycomb_repressive_complex_2_tri-helical_domain(100%),SET_domain(100%),WD_repeat_binding_protein_EZH2(96%) |EZH2_WD-Binding(12%),PRC2_HTH_1(100%),SET(100%),preSET_CXC(100%) 1 2 0 37 607 ENST00000651503.2 ENST00000478654.5 upstream downstream none CTACATCCCTGATGATATCCCCATTCCTGCTGAGTTTGAACTTCGAGAGTCAAATATGCCTGGGGCAGGACTAGGAATATGGACCAAAAGGAAGATCGAAGTAGGTGAAAAGTTTGGGCCTTATGTGGGAGAGCAGAGGTCAAACCTGAAAGACCCCAGTTATGGATGGGAG|AGTATGTTTAGTTCCAATCGTCAGAAAATTTTGGAAAGAACGGAAATCTTAAACCAAGAATGGAAACAGCGAAGGATAC...CGGGACTAGGGAG___TGTTCGGTGACCAGTGACTTGGATTTTCCAACACAAGTCATCCCATTAAAGACTCTGAATGCAGTTGCTTCAGTACCCATAATGTATT YIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWE|SMFSSNRQKILERTEILNQEWKQRRI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense 15088 ATP13A1::ZNF14 ENSG00000105726.17::ENSG00000105708.9 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP13A1 ENSG00000105726.17 protein_coding - - chr19:19645198-19663676:- chr19:19649567:- chr19:19756007-19774485:- chr19:19760376:- ZNF14 ENSG00000105708.9 protein_coding - - chr19:19710472-19733112:- chr19:19714487:- chr19:19821281-19843921:- chr19:19825296:- chr19:19647907,chr19:19647920 chr19:19720572,chr19:19720583 NA NA chr19:19758716,chr19:19758729 chr19:19831381,chr19:19831392 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none E1-E2_ATPase(100%),haloacid_dehalogenase-like_hydrolase(100%)|C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) Cation_ATPase(100%),E1-E2_ATPase(100%),Hydrolase(100%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-C2HC_2(100%),zf-met(100%) 1 2 4 699 52 ENST00000357324.11 ENST00000344099.4 upstream downstream duplicates(4) CAGGCCACCGACCCCCAGCAGCTGCTCCGCCTCATCCCCCATGTGCAGGTGTTCGCCCGTGTGGCTCCCAAGCAGAAG___GAGTTTGTCATCACCAGCCTGAAGGAGCTGGGCTACGTGACCCTCATGTGTGGGGATGGCACCAACGACGTGGGCGCCCTGAAGCATGCTGACGTGG|GACTCAGTCTCCTTTGAGGATGTGGCCGTGAACTTCACCCTGGAGGAGTGGGCTTTGCTGGATTCTTCACAGAAAAAGCTCTATGAAGATGTGATGCAGGAGACCTTCAAAAACCTGGTTTGTCTAG___GAAAAAAGTGGGAAGACCAGGACATTGAAGATGACCACAGAAACCAGGGGAAAAATCGAAG___ATGTCATATGGTTGAGAGACTCTGTGAAAGTAGAAGAGGTAG QATDPQQLLRLIPHVQVFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADV|glsll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15089 WARS2::ENSG00000230015 ENSG00000116874.12::ENSG00000230015.4 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WARS2 ENSG00000116874.12 protein_coding - - chr1:119031216-119140654:- chr1:119076350:- chr1:119573839-119683277:- chr1:119618973:- ENSG00000230015 ENSG00000230015.4 lncRNA - - chr1:240739131-240743904:- chr1:240739853:- chr1:240902431-240907204:- chr1:240903153:- chr1:119073792,chr1:119073797 chr1:240743639,chr1:240743642 NA NA chr1:119616415,chr1:119616420 chr1:240906939,chr1:240906942 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none tRNA_synthetases_class_I_(W_and_Y)(29%)| tRNA-synt_1b(0%)| 2 0 1 127 4 ENST00000235521.5 ENST00000431139.4 upstream downstream duplicates(1) CAGCAAGAAGCGAGTATTTTCCGGCATTCAACCTACAGGAATCCTCCACCTGGGCAATTACCTGGGAGCCATTGAGAGCTGGGTGAGGTTACAGGATGAATATGACTCTGTATTATACAGCATTGTTGACCTCCACTCCATTACTGTCCC...CCCAGCTGTCCTTCGGCAGAGCATCCTGGACATGACTGCTGTTCTTCTTGCCTGTGGCATAAACCCGGAAAAAAGCATCCTTTTCCAACAATCTCAG|CATCAAGCAAAGAACTTGTAATACGCTGAATGCTGCATAGAAGGTTTTGAAACTACTTACCTGCTGTGGAACACCTGTATAACTTTAAAATGCATCAATCAATCTCGAGAGTAT PAVLRQSILDMTAVLLACGINPEKSILFQQSQ|hqaknl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15116 DSN1::SOGA1 ENSG00000149636.16::ENSG00000149639.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1494 TRUE 2650 TRUE 1023 DSN1 ENSG00000149636.16 protein_coding - - chr20:36751791-36773818:- chr20:36770873:- chr20:35380194-35402221:- chr20:35399276:- SOGA1 ENSG00000149639.15 protein_coding - - chr20:36777447-36863538:- chr20:36794599:- chr20:35405850-35491941:- chr20:35423002:- chr20:36768172,chr20:36768174 chr20:36796298,chr20:36796297 NA NA chr20:35396575,chr20:35396577 chr20:35424701,chr20:35424700 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Mis12-Mtw1_protein_family(16%)|Domain_of_unknown_function_(DUF4482)(31%) MIS13(3%)|DUF4482(1%) 15 40 30 760 523 ENST00000373750.9 ENST00000237536.9 upstream downstream duplicates(7),mismatches(5) ATTGGAATCAAGTCTCAGTCCTGTGGAAGTGTTTGCTAAAACATCTGCCTCCCTGGAGATGAATCAAGGCGTTTCAGAGGAAAGAATTCACCTTGGCTCTAGCCCTAAAAAAGGGGGAAATTGTGATCTCAGCCACCAGGAAAGACTTCAGTCGAAGTCCCTTCATTTGTCTCCTCAAGAACAATCTGCCAGTTATCAAGACAGGAGGCAATCCTGGCGGCGAGCAAGTATGAAAGAAACGAACCGGCGGAAGTCGCTGCATCCCATTCACCAGGGCATCACAG|AACCAAATCTGTTTCTTCCATGTCTGAGTTTGAAAGTTTGCTCGACTGTTCCCCTTACCTTGCTGGaGGAGATGCCCGGGGCAAGAAGCTGCCTAACAACCCTGCCTTTGGCTTTGTGAGCTCCGAGCCAGGGGATCCAGAGAAAGACACCAAGGAGAAGCCTGGGCTCTCGTCGAGGGACTGCAACCACCTGGGTGCCCTGGCCTGCCAGGACCCCCCAGGGAGGCAGATGCAGCGCAGCTACACGGCTCC LESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPKKGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGIT|epnlflpclslkvcstvpltlleempgarsclttlplal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15117 DSN1::SOGA1 ENSG00000149636.16::ENSG00000149639.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1495 TRUE 2650 TRUE 1023 DSN1 ENSG00000149636.16 protein_coding - - chr20:36751791-36773818:- chr20:36773662:- chr20:35380194-35402221:- chr20:35402065:- SOGA1 ENSG00000149639.15 protein_coding - - chr20:36777447-36863538:- chr20:36794599:- chr20:35405850-35491941:- chr20:35423002:- chr20:36768172,chr20:36768174 chr20:36796298,chr20:36796297 NA NA chr20:35396575,chr20:35396577 chr20:35424701,chr20:35424700 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF4482)(31%) |DUF4482(1%) 3 28 10 851 523 ENST00000373734.8 ENST00000237536.9 upstream downstream duplicates(2),mismatches(2) GGTGGAGACCGCTTCACCCTGATCAGGGAGTATCGGCTGCGGGTGCGCAAGGCGTCCAGGAGTGACCTGGGGCTGTGGAGAGCGACCCGTGGCCTTGTGTTTCAG|AACCAAATCTGTTTCTTCCATGTCTGAGTTTGAAAGTTTGCTCGACTGTTCCCCTTACCTTGCTGGaGGAGATGCCCGGGGCAAGAAGCTGCCTAACAACCCTGCCTTTGGCTTTGTGAGCTCCGAGCCAGGGGATCCAGAGAAAGACACCAAGGAGAAGCCTGGGCTCTCGTCGAGGGACTGCAACCACCTGGGTGCCCTGGCCTGCCAGGACCCCCCAGGGAGGCAGATGCAGCGCAGCTACACGGCTCCTGACAAGACGGGCATCCGAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15118 DSN1::SOGA1 ENSG00000149636.16::ENSG00000149639.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2650 TRUE 1023 DSN1 ENSG00000149636.16 protein_coding - - chr20:36751791-36773818:- chr20:36771425:- chr20:35380194-35402221:- chr20:35399828:- SOGA1 ENSG00000149639.15 protein_coding - - chr20:36777447-36863538:- chr20:36794599:- chr20:35405850-35491941:- chr20:35423002:- chr20:36768172,chr20:36768174 chr20:36796298,chr20:36796297 NA NA chr20:35396575,chr20:35396577 chr20:35424701,chr20:35424700 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Mis12-Mtw1_protein_family(2%)|Domain_of_unknown_function_(DUF4482)(31%) MIS13(0%)|DUF4482(1%) 1 2 12 697 523 ENST00000373734.8 ENST00000237536.9 upstream downstream duplicates(2),mismatches(2) GTGACGTAGAAGGTGGAGACCGCTTCACCCTGATCAGGGAGTATCGGCTGCGGGTGCGCAAGGCGTCCAGGAGTGACCTGGGGCTGTGGAGAGCGACCCGTGGCCTTGTGTTTCAG___...TTTCAGAGTTTACCACCTAGGATGACTTCAGTGACTAGATCAGAGATCATAGATG|AACCAAATCTGTTTCTTCCATGTCTGAGTTTGAAAGTTTGCTCGACTGTTCCCCTTACCTTGCTGGaGGAGATGCCCGGGGCAAGAAGCTGCCTAACAACCCTGCCTTTGGCTTTGTGAGCTCCGAGCCAGGGGATCCAGAGAAAGACACCAAGGAGAAGCCTGGGCTCTCGTCGAGGGACTGCAACCACCTGGGTGCCCTGGCCTGCCAGGACCCCCCAGGGAGGCAGA MTSVTRSEIID|epnlflpclslkvcstvpltlleempgarsclttlplal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15121 VPS13B::RALYL ENSG00000132549.20::ENSG00000184672.12 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99467634:+ chr8:100025494-100889808:+ chr8:100479862:+ RALYL ENSG00000184672.12 protein_coding + - chr8:84182787-84921844:+ chr8:84802592:- chr8:85095022-85834079:+ chr8:85714827:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none N-terminal_region_of_Chorein_or_VPS13(100%)| Chorein_N(100%)| 18 12 16 82 23 ENST00000357162.7 unknown downstream downstream duplicates(9),mismappers(1),mismatches(1) TGCCGGGAACACTTGTCCTCTGTTTGCCTCAAATAAAGATTATTAGTGCTGGGCACAAGTATATGGAACCTCTGCAGGAGATTCCATTTGTTATCCCACGACCCATCCTTGAAGAAG___GTGATGCTTTTCCTTGGACGATCAGCTTGCATAATTTCAGCATATATACCCTTCTTGGAAAACAAGTGACACTTTGCCTAGTGGAACCTATGGGTTGCACCTCCACTCTAGCTGTCACGTCTCAAAAACTGCTTGCTACGGGACCTGATACACGACATTCATTTGTTGTCTGTCTCCATGTTGACCTAGAGTCACTAGAGATAAAATGCTCTAATCCCCAG|GTTTCAGACAAGCAACTGTTGGATTAGAGCATACAGGGACATATATTGTCCTACTGCCCCCTGTGGTTAGTATGATTTGTCTGACTAGCTAGTTATTAATAGTTGTCCCCTTCTCCTACCACTTCAAGCCCACTTCAACCAGCTCCTTCCAAATGCTCAAGAGAAGACTTCAGAAGAAATTCAAAGTTTTCAAAATGATGTTGGATTGAAAGTTCTGATGATGTTCTATAAACCAAGAGTTTGCAAACTGTGGCCAAATCCTGCTCACCCTCTGATTGTGTATAGCCCC PGTLVLCLPQIKIISAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHNFSIYTLLGKQVTLCLVEPMGCTSTLAVTSQKLLATGPDTRHSFVVCLHVDLESLEIKCSNPQ|vsdkqlld* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15125 EIF4G3::RAB11FIP4 ENSG00000075151.24::ENSG00000131242.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1498 TRUE 2652 TRUE 1024 EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21111323:- chr1:21132785-21503778:- chr1:21437816:- RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31517651:+ chr17:29718693-29865230:+ chr17:29844669:+ chr1:21105452,chr1:21105458 chr17:31477571,chr17:31477565 NA NA chr1:21431945,chr1:21431951 chr17:29804589,chr17:29804583 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |FIP_domain_(100%) |RBD-FIP(100%) 3 6 7 11 38 ENST00000684485.1 ENST00000621161.5 upstream upstream duplicates(2),mismatches(2) CTGGAGGCGGCCACAGCGCCATGTTGGATGCTCTGCTCGTTGAGTGAAGAAAATCCACCGGCATCGCCTGAGCCCCGCTACCGAGAAGGGCGCCGCTTCCT...CCGCCGCCGGCCCATGAGGATATTGCCGTGAAAG___...CTTAAAG?CTGTGTCACCTGGATAGTCCACGGAAAGGAAAACTCATGATCTTTATGGAAGAGCTATGTATAATAATGAAATACTGCTTAGTATGTGCTAAGCCCATCATAA...___CAATCCCACAGAGTATTGATGAGGAAACTGAAGTTTGGAGCGATCACATCATTTTCCCAAG|GGCAGCGAGGTCACAGGCCCCACCTTTGCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTGGCGCCACCTGAGGGCCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGAGCCTGGAGGGGTCTGTCGGGAGTCCTGCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGACAA___GTCCCTGGTCCACACTCCATCCATGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4724 chr17:31534883-31534971:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15126 EIF4G3::RAB11FIP4 ENSG00000075151.24::ENSG00000131242.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2652 TRUE 1024 EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21176722:- chr1:21132785-21503778:- chr1:21503215:- RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31517651:+ chr17:29718693-29865230:+ chr17:29844669:+ chr1:21105452,chr1:21105458 chr17:31477571,chr17:31477565 NA NA chr1:21431945,chr1:21431951 chr17:29804589,chr17:29804583 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none |FIP_domain_(100%) |RBD-FIP(100%) 6 2 2 68 38 ENST00000686579.1 ENST00000621161.5 upstream upstream duplicates(1),mismatches(1) ACTGCTGGAGGCGGCCACAGCGCCATGTTGGATGCTCTGCTCGTTGAGTGAAGAAAATCCACCGGCATCGCCTGAGCCCCGCTACCGAGAAGGGCGCCGCTTCCTCCGGGGAGGGGGATAAAGATCCCCCGCCGCCGGCCCATGAGGATATTGCCGTGAAAG|GGCAGCGAGGTCACAGGCCCCACCTTTGCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4724 chr17:31534883-31534971:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15127 DNM3::METTL13 ENSG00000197959.15::ENSG00000010165.20 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNM3 ENSG00000197959.15 protein_coding + + chr1:171817887-172418466:+ chr1:171921821:+ chr1:171787027-172387606:+ chr1:171890961:+ METTL13 ENSG00000010165.20 protein_coding + + chr1:171781660-171814023:+ chr1:171813875:+ chr1:171750800-171783163:+ chr1:171783015:+ chr1:171953847,chr1:171953859 chr1:171802273,chr1:171802266 NA NA chr1:171922987,chr1:171922999 chr1:171771413,chr1:171771406 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Dynamin_family(26%)| Dynamin_N(41%)| 2 5 3 118 12 ENST00000485254.3 ENST00000476386.1 downstream upstream mismappers(1) GCTGGCTGAGCCCGGCGCAGCAGCAGCAGCCAGGGCAGCGCGGCCCCTACTCCCTGTCAGGTCGTAGAGGCGAGaAGGGgCCAGCTGGTCGCCGGCCaCTC...GGAACCGGGAGATGGAGGAGCTGATCCCGCTGGTGAACCGTCTGCAGGACGCGTTTTCGGCGCTGGGACAGAGCTGCCTGCTGGAGCTGCCGCAGATCGCCGTGGTGGGCGGCCAGAGCGCCGGCAAGAGCTCGGTGCTCGAGAACTTCGTGGGCAG___GGACTTTCTCCCTCGAGGGTCGGGCATTGTAACAAGACGACCTCTTGTGCTGCAGCTTGTTACTTCTAAAGCAG|GGTCACCAGATCCTCCTCCTCCTGCAGGCTCACCATGGCTTCAAAAGAATTCAGTGTTCTGCAAGACTCTTCAGTCCTACTACTGCTCTCTATTGAGATTGGATCATGTGCCCATAATCCAAGAGATTTCCTTCAAATCTGTGTACCAG NREMEELIPLVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVTSKA|gspdppppagspwlqknsvfcktlqsyycsllrldhvpiiqeisfksvy NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15129 VAC14::HYDIN ENSG00000103043.15::ENSG00000157423.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1499 TRUE 2653 TRUE 1025 VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70800797:- chr16:70721342-70835063:- chr16:70834700:- HYDIN ENSG00000157423.18 protein_coding - - chr16:70802084-71230722:- chr16:70840233:- chr16:70835987-71264625:- chr16:70874136:- chr16:70790662,chr16:70790684 chr16:70843183,chr16:70843193 NA NA chr16:70824565,chr16:70824587 chr16:70877086,chr16:70877096 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 1 4 4 212 16 ENST00000261776.10 ENST00000393567.7 upstream downstream duplicates(2),mismappers(1) GCGAGGCGGCGGAGCGTGGCAGGCAAGCCTAGAGCGGCGTGGTCCATGCGCCGGCGCCGGGGGCAGAGCGGAGCCGCAGACTCCCCTGGCCCCGGCGCGGCCCCGGCAGCCGCGGGCTAAGG...GAGGTTCCCCCAGCTGCCACCATGAACCCCGAGAAGGATTTCGCGCCGCTCACGCCTAACATCGTGCGCGCCCTCAATGACAAGCTGTACGAAAAGCGGAAGGTGGCAGCGCTGGAGATCGAGAA|ATCAGCCATGGTCCAACATTTATGTGCAACATCTCAGGCTGTGCTGTGAGCCCGGCTATCCATTTCTCCTTCACCAGCTACAACTTTGGGACCTGCTTTATCTATCAAGCTGGGATGCCCCCATACAAACAAACCCTGGTAATTACCAACAAGGAAGAAACACCTATGAG...CCATCATGAACAACAtCCTGGCCCAGCTCACATTTAATCAGTCCATTCTGTTCACAATTCCAGAACTCCAGGAACCCAAG___GTCCTTACCCTGGCGCCCTTCC MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEk|samvqhlcatsqavl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 70834700|70834700|70834700 TRUE|TRUE|TRUE 70913659|70913389|70908822 FALSE|FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15130 VAC14::HYDIN ENSG00000103043.15::ENSG00000157423.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2653 TRUE 1025 VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70800797:- chr16:70721342-70835063:- chr16:70834700:- HYDIN ENSG00000157423.18 protein_coding - - chr16:70802084-71230722:- chr16:70835834:- chr16:70835987-71264625:- chr16:70869737:- chr16:70790662,chr16:70790684 chr16:70843183,chr16:70843193 NA NA chr16:70824565,chr16:70824587 chr16:70877086,chr16:70877096 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none none 1 0 0 212 7 ENST00000261776.10 ENST00000393567.7 upstream downstream none TGGCAGGCAAGCCTAGAGCGGCGTGGTCCATGCGCCGGCGCCGGGGGCAGAGCGGAGCCGCAGACTCCCCTGGCCCCGGCGCGGCCCCGGCAGCCGCGGGC...GCGCGCCCTCAATGACAAGCTGTACGAAAAGCGGAAGGTGGCAGCGCTGGAGATCGAGAA|ATTTTAGTCCTAGATCCAGCCAACAGGATTGTGAAGTTGGG RALNDKLYEKRKVAALEIEk|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 70834700|70834700|70834700 TRUE|TRUE|TRUE 70913659|70913389|70908822 FALSE|FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15131 RSBN1L::APTR ENSG00000187257.16::ENSG00000214293.11 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RSBN1L ENSG00000187257.16 protein_coding + + chr7:77696459-77783022:+ chr7:77697057:+ chr7:77325776-77412339:+ chr7:77326374:+ APTR ENSG00000214293.11 lncRNA - - chr7:77657659-77696290:- chr7:77685326:- chr7:77286976-77325607:- chr7:77314643:- chr7:77697752,chr7:77698046,chr7:77697750 chr7:77693628,chr7:77693618,chr7:77693630 NA NA chr7:77327069,chr7:77327363,chr7:77327067 chr7:77322945,chr7:77322935,chr7:77322947 NA NA sense sense out-of-frame intron exon/splice-site inversion high none none none 5 0 4 217 28 ENST00000334955.13 ENST00000664660.1 downstream downstream mismatches(1) CAGCACCTTCGCCTCAGAGCTATGGCAGCCCCGCGTCTTGGAGCTTTGCCCCTCTGTCTGCTGCTCCCTCCCCGTCCTCTTCTCGGAGCAGTTTCTCTTTCTCCGCTGGCACGGCCGTTCCCTCCTCAGCCTCCGCTTCCTTGTCTCAGCCGGTGCCGCGCAAACTGCTGGTCCCTCCTACGCTGCTGCACGCTCAGCCTCACCATCTCCTCCTGCCCGCCGCCGCCGCCGCTGCCTCGGCTAACGCCAAGTCGCGCAGACCTAAGGAGAAGCGGGAGAAGGAGAGGAGGAGGCACGGTCTCGGTGGGGCCCGAGAGGCCGGCGGGGCCTCCCGGGAGGAGAACGGGGAGGTGAAGCCGCTGCCCCGAGGT|TTCACCAGGTACTGCCTTCTAA?GAGCTGGCCATTTCCACATGTCAGATAGGACCAACTTGCCTTTTAACTACCCG...CTGTTGCCGGTATCACAGCTTTTCTTCAAAACAG___GAAGCAACGAGAATGAGGGCATTCCAGTAGCAGGAGACAGCATGCATAGAGATGCTGATGAAGAAAGAGCCTAGCGCACG APSPQSYGSPASWSFAPLSAAPSPSSSRSSFSFSAGTAVPSSASASLSQPVPRKLLVPPTLLHAQPHHLLLPAAAAAASANAKSRRPKEKREKERRRHGLGGAREAGGASREENGEVKPLPRg|ftrycll?swpfphvr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15133 SLC9A7::ZFHX3 ENSG00000065923.10::ENSG00000140836.17 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC9A7 ENSG00000065923.10 protein_coding - - chrX:46599251-46759118:- chrX:46758705:- chrX:46458686-46618553:- chrX:46618140:- ZFHX3 ENSG00000140836.17 protein_coding - + chr16:72782885-73891871:- chr16:73019480:+ chr16:72816784-73925770:- chr16:73053379:+ chrX:46742584,chrX:46742603 chr16:73017533,chr16:73017531 NA NA chrX:46602019,chrX:46602038 chr16:73051432,chr16:73051430 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Sodium/hydrogen_exchanger_family(6%)| Na_H_Exchanger(0%)| 0 1 3 71 13 ENST00000616978.5 unknown upstream upstream mismatches(2) GCGGCGGCGGAGGACAGCAGCGCCATGGAGGAGCTCGCTACTGAGAAGGAGGCGGAGGAGAGCCACCGGCAAGACAGCGTGAGCCTGCTCACCTTCATCCTGCTGCTCACGCTCACCATCCTCACCATCTGGCTCTTCAAGCACCGCCGGGTGCGCTTTCTGCACGAGACCGGGCTGGCCATGATCTATG|GTGCCCACCGGAAACCCCTGCCTGGACCCCTGCAGCCCTCCCAGCCACACTGCAGCATCGAGGGAACAGCACTTTGCCTCCCCAAACCTGCCCTGGCTACTGGGTGACCCCGCTCTGCTATCCCCACCTTCACCCTGAGATGCACAGACTGTCTGCTCTAAAGGGCATGAACCTGGAGATTGTGAGTCATCACGACGCGCAG AAAEDSSAMEELATEKEAEESHRQDSVSLLTFILLLTLTILTIWLFKHRRVRFLHETGLAMIY|gahrkplpgplqpsqphcsiegtalclpkpalatg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15135 RAP1A::TECTA ENSG00000116473.15::ENSG00000109927.11 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAP1A ENSG00000116473.15 protein_coding + + chr1:111542218-111716691:+ chr1:111627563:+ chr1:112084840-112259313:+ chr1:112170185:+ TECTA ENSG00000109927.11 protein_coding + - chr11:121101243-121191490:+ chr11:121146193:- chr11:120971952-121062199:+ chr11:121016902:- chr1:111649723 chr11:121161535 NA NA chr1:112192345 chr11:121032244 NA NA sense antisense unknown 5'UTR/splice-site exon translocation/5'-5' high none none none 2 0 2 37 6 ENST00000687939.1 unknown downstream downstream duplicates(1) GGGGGG___GATAGATTCCCAGAAGTGGGATAACTGGATCAGAGGGTGATTACCCTGTGTATAAGAGTATGTGTCTCACTGCACCTTCAATGGCATTGAGTAG|GGAGTTGGAAGACTGGCCTTCCCAGAGCAATCAAGAAAGAGGAGAAGCTACAAGGAGGGACAACGAGAAGGACTCACTGCAGGACGTGTAATTCCTCCAGCCAGTCACCGTAATCCCCTGAGTCTGGCAGGTGCTGGCGTAGTTCTGCAGCCAGCTGCAGGCGGTCTGCACCGCGCCCCCATCGATGCAAGAGTCAAACAGGCAGTTCTTATAGAAGAAGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15136 EIF4G3::FBXO42 ENSG00000075151.24::ENSG00000037637.11 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21089138:- chr1:21132785-21503778:- chr1:21415631:- FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16253731:- chr1:16573335-16678975:- chr1:16580226:- chr1:21076985 chr1:16254434 NA NA chr1:21403478 chr1:16580929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Kelch_motif(41%) |Kelch_1(2%),Kelch_2(2%),Kelch_3(0%),Kelch_4(0%),Kelch_5(0%) 2 0 2 243 73 ENST00000685872.1 ENST00000375592.8 upstream downstream none CGGCAGCGGTCCCCCCTCCTCACCCGAACATCAGGGCCCTCCAGACTCAGGCGCCCCAACA___AATTCCTAGAGGACCTGTGCAACAACCTCTTGAGGATCGAATCTTCACTCCCGCTGTCTCAGCAGTCTACAGCACG|GAGCAATGATGTCTGGGTCCTTGACCTTGAGCAGTGGGCGTGGTCCAAGCCGAACATCTCTGGCCCCAGTCCTCATCCTCGAGGTGGCCAATCTCAG___ATTGTCATAGATGATGCAACTATCTTAATCCTCGGAGGGTGTGGCGGTCCCAATGCT___CTATTCAAGGATGCTTGGTTGTTGC AAVPPPHPNIRALQTQAPQQIPRGPVQQPLEDRIFTPAVSAVYST|eq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15137 SPAG1::FBXO43 ENSG00000104450.13::ENSG00000156509.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPAG1 ENSG00000104450.13 protein_coding + + chr8:100157906-100259278:+ chr8:100162420:+ chr8:101170134-101271506:+ chr8:101174648:+ FBXO43 ENSG00000156509.14 protein_coding - + chr8:100133351-100145817:- chr8:100143208:+ chr8:101145579-101158045:- chr8:101155436:+ chr8:100165831,chr8:100165826 chr8:100135400,chr8:100135392 NA NA chr8:101178059,chr8:101178054 chr8:101147628,chr8:101147620 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 0 3 18 5 ENST00000520643.5 unknown downstream upstream duplicates(1) CGGGCGACGAGACCCTCCCTCAGCACCTGCAGTGCAGCCAGAGCCGGTGCGGCGGCCGCGACTTCCCCGACGCGGGGCGCTGAGAAGCA___CTATGACCACCAAAGATTATCCATCATTGTGGGGCTTTGGAACAACAAAAACATTCAAAATTCCCATTGAACATCTAGATTTCAAATACATTGAAAAATGTTCAGATGTTAAACATCTGGAAAAAATTCTTTGCGTGCTCAG|ATGATTCAAAGGACATGAAGAAGACTGTCATTCCTTCAAAGTTTTCTCCAGGACAAATGCACAATTTTTCTCCATTAAAAGATCCTGGGAAGATCTATTTATTGGCTGTAAT MTTKDYPSLWGFGTTKTFKIPIEHLDFKYIEKCSDVKHLEKILCVLr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15143 TNIP2::HMGCLL1 ENSG00000168884.15::ENSG00000146151.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TNIP2 ENSG00000168884.15 protein_coding - - chr4:2741648-2756342:- chr4:2744453:- chr4:2743375-2758069:- chr4:2746180:- HMGCLL1 ENSG00000146151.14 protein_coding - - chr6:55434373-55579197:- chr6:55509217:- chr6:55299171-55443995:- chr6:55374015:- NA NA NA NA NA NA NA NA sense sense unknown CDS intron translocation medium none Leucine_zipper_of_domain_CC2_of_NEMO__NF-kappa-B_essential_modulator(78%),TSG101_and_ALIX_binding_domain_of_CEP55(100%)|HMGL-like(51%) CC2-LZ(87%),EABR(100%)|HMGL-like(69%) 17 18 8 355 31 ENST00000502256.1 unknown upstream downstream duplicates(1),mismatches(1) GGCGCTTCCTCCTTCCTTGAGCAGAAATGTGTGTCTCGCCTCTCTTCAGATTCTCGCTTACAAGGATGACTTCATGTCAGAAAGGGCCGATCGGGAACGGGCT|TCAACTGAGGCCTAGGTCTGGAAGAACAATTCAATCATCATTATGTACCACCAAAATATGGGACATAAAACTCTAAAAATAAGACATCTGTGAAAGCTATTTTCTTTCATACATATGGTTTGTTTAAGGGTTTGTACTTTTTAAGCTTTATATATTATTCTGGCACTGCTGTGTGCCAGAACAACACATACCCAGCAGCAGTTAATATTTGTAAGCTGGGTTTGTGCAGTTGTGTCTAAATAGCCTTCATTTAGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15144 CD59::FBXO3 ENSG00000085063.18::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2655 TRUE 1026 CD59 ENSG00000085063.18 protein_coding - - chr11:33703010-33736479:- chr11:33717370:- chr11:33724556-33758025:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33754500:- chr11:33762485-33796089:- chr11:33776046:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none u-PAR/Ly-6_domain(43%)|ApaG_domain_(100%),SMI1_/_KNR4_family_(SUKH-1)(18%) UPAR_LY6(1%)|DUF525(100%),SMI1_KNR4(41%) 8 2 23 9492 236 ENST00000642928.2 ENST00000265651.8 upstream downstream duplicates(3),low_entropy(1),mismatches(3),multimappers(2) CGAGGCTGGAAGAGGATCcTGGGCGCCGCCAG___GTTCTGTGGACAATCACAATGGGAATCCAAGGAGGGTCTGTCCTGTTCGGGCTGCTGCTCGTCCTGGCTGTCTTCTGCCATTCAG___GTCATAGCCTGCAGTGCTACAACTGTCCTAACCCAACTGCTGACTGCAAAACAGCCGTCAATTGTTCATCTGATTTTGATGCGTGTCTCATTACCAAAGCTG|GACCAAATGGCTCGAAATCCAGCTGCTATTGACATGTTTATTATAG___GTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAG___ATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACT MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA|gpngsksscy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 33731752 FALSE 33780147 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15145 CD59::FBXO3 ENSG00000085063.18::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE TRUE 1500 TRUE 2655 TRUE 1026 CD59 ENSG00000085063.18 protein_coding - - chr11:33703010-33736479:- chr11:33717370:- chr11:33724556-33758025:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33751607:- chr11:33762485-33796089:- chr11:33773153:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none u-PAR/Ly-6_domain(43%)|ApaG_domain_(100%),SMI1_/_KNR4_family_(SUKH-1)(6%) UPAR_LY6(1%)|DUF525(100%),SMI1_KNR4(0%) 4 4 18 9492 230 ENST00000642928.2 ENST00000265651.8 upstream downstream duplicates(1),mismatches(3) CACAATGGGAATCCAAGGAGGGTCTGTCCTGTTCGGGCTGCTGCTCGTCCTGGCTGTCTTCTGCCATTCAG___GTCATAGCCTGCAGTGCTACAACTGTCCTAACCCAACTGCTGACTGCAAAACAGCCGTCAATTGTTCATCTGATTTTGATGCGTGTCTCATTACCAAAGCTG|GTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAG___ATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACTGTGTCAGTTTCCACATCGTTTCTGCCAGAACTTAGCTCTGTACATCCACCCCACTATTTCTTCACATACCGAATCAG___GATTGAAATGTCAAAAGATGCACTTCCTGAGA MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA|gATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 33731752 FALSE 33780147 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15148 ENSG00000284969::FBXO3 ENSG00000284969.1::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2657 TRUE 1027 ENSG00000284969 ENSG00000284969.1 protein_coding - - chr11:33698261-33722467:- chr11:33717370:- chr11:33719807-33744013:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33754500:- chr11:33762485-33796089:- chr11:33776046:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none u-PAR/Ly-6_domain(43%)|ApaG_domain_(100%),SMI1_/_KNR4_family_(SUKH-1)(18%) UPAR_LY6(1%)|DUF525(100%),SMI1_KNR4(41%) 4 2 18 9492 236 ENST00000525763.5 ENST00000265651.8 upstream downstream duplicates(3),low_entropy(1),mismatches(1),multimappers(2) GTTCTGTGGACAATCACAATGGGAATCCAAGGAGGGTCTGTCCTGTTCGGGCTGCTGCTCGTCCTGGCTGTCTTCTGCCATTCAG___GTCATAGCCTGCAGTGCTACAACTGTCCTAACCCAACTGCTGACTGCAAAACAGCCGTCAATTGTTCATCTGATTTTGATGCGTGTCTCATTACCAAAGCTG|GACCAAATGGCTCGAAATCCAGCTGCTATTGACATGTTTATTATAG___GTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAG___ATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACT MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA|gpngsksscy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15149 ENSG00000284969::FBXO3 ENSG00000284969.1::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2657 TRUE 1027 ENSG00000284969 ENSG00000284969.1 protein_coding - - chr11:33698261-33722467:- chr11:33717370:- chr11:33719807-33744013:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33751607:- chr11:33762485-33796089:- chr11:33773153:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none u-PAR/Ly-6_domain(43%)|ApaG_domain_(100%),SMI1_/_KNR4_family_(SUKH-1)(6%) UPAR_LY6(1%)|DUF525(100%),SMI1_KNR4(0%) 4 4 14 9492 230 ENST00000534312.5 ENST00000265651.8 upstream downstream duplicates(1),mismatches(1) CACAATGGGAATCCAAGGAGGGTCTGTCCTGTTCGGGCTGCTGCTCGTCCTGGCTGTCTTCTGCCATTCAG___GTCATAGCCTGCAGTGCTACAACTGTCCTAACCCAACTGCTGACTGCAAAACAGCCGTCAATTGTTCATCTGATTTTGATGCGTGTCTCATTACCAAAGCTG|GTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAG___ATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACTGTGTCAGTTTCCACATCGTTTCTGCCAGAACTTAGCTCTGTACATCCACCCCACTATTTCTTCACATACCGAATCAG___GATTGAAATGTCAAAAGATGCACTTCCTGAGA MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKA|gATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15152 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2658 TRUE 1028 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21875057,chr9:21875057 chr9:22033450,chr9:22033445 NA NA chr9:21875056,chr9:21875056 chr9:22033449,chr9:22033444 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 5 2 8 681 42 ENST00000644715.2 ENST00000650946.1 downstream upstream duplicates(1),mismatches(2) T...CGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAG EEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15153 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2658 TRUE 1028 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21875057,chr9:21875057 chr9:22033450,chr9:22033445 NA NA chr9:21875056,chr9:21875056 chr9:22033449,chr9:22033444 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 3 3 5 855 42 ENST00000644715.2 ENST00000650946.1 downstream upstream duplicates(1),mismatches(3) GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGtACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG VLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15154 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2658 TRUE 1028 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046317:+ chr9:21994138-22128102:+ chr9:22046316:+ chr9:21875057,chr9:21875057 chr9:22033450,chr9:22033445 NA NA chr9:21875056,chr9:21875056 chr9:22033449,chr9:22033444 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 8 681 3 ENST00000581962.1 ENST00000650946.1 downstream upstream duplicates(1),mismatches(2) ATTTTAAGTTCTAGTAACCTCCAGTGCTATTGTTTCTCTAGGTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAA...GGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15160 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2659 TRUE 1029 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |ZIP_Zinc_transporter(34%) |Zip(0%) 2 1 2 840 33 ENST00000648631.1 ENST00000255559.8 upstream downstream none CGCTTCTCCGCAAGGACCCTCTGTTAGGCAGGCGCCCACCGTAAGCCTCCCGGGCCTTGTGAACCTGCAAACCCAAGTCTGAGAGACGATCCGCCTTCAGC...CCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGcCCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15161 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2659 TRUE 1029 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72586654:- chr17:70286232-70636611:- chr17:70582793:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |ZIP_Zinc_transporter(34%) |Zip(0%) 1 0 2 97 33 ENST00000648631.1 ENST00000255559.8 upstream downstream none CGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGAgTACTT...GGAAGCGGGGGTTCTGTTGCGCTTTACAAAGTGAAAGGAAGGTGTCTGAGGTGCTGGCCTTTGGGGACAATTTCACTAT|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15185 SCYL3::DNM3 ENSG00000000457.14::ENSG00000197959.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SCYL3 ENSG00000000457.14 protein_coding - - chr1:169849631-169894267:- chr1:169875978:- chr1:169818772-169863408:- chr1:169845119:- DNM3 ENSG00000197959.15 protein_coding + + chr1:171817887-172418466:+ chr1:171949725:+ chr1:171787027-172387606:+ chr1:171918865:+ NA NA NA NA NA NA NA NA sense sense unknown CDS intron inversion low none |Dynamin_GTPase_effector_domain(100%),Dynamin_central_region(100%),Dynamin_family(73%),PH_domain(100%) |Dynamin_M(100%),Dynamin_N(43%),GED(100%),PH(100%) 0 0 3 84 17 ENST00000367771.11 unknown upstream upstream none CTGGGATCTATGACATATTGCTGGCTCTTATCTTCCTTCATGACAGA___GGACACCTAACACACAATAATGTCTGTTTATCATCTGTGTTTGTGAGTGAAGATGGACACTGGcAGCTAGGAGGAATaGgAACTGTTTGTAAAGTTTCTCAGGCCACACCAGAG...|...TGTATTATTATACACCTATTAGTATGTCTAAAATTAAAAAGACTGACCATACAAAGTGTTGACTAGGATGCGGAGGAACTGGAACTCTTACACACTGTTGGTGTCAAATGTAAAATGGCACAACCACTTTGGAAAAGAGTTTTGCACTTTCTCAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3120 chr1:172138808-172138888:+ FALSE NA NA TRUE FRAME_UNKNOWN Protein-associating with the carboxyl-terminal domain of ezrin Other SCY1 Q8IZE3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15187 RAB2A::ENSG00000228862 ENSG00000104388.15::ENSG00000228862.5 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB2A ENSG00000104388.15 protein_coding + + chr8:60516936-60623644:+ chr8:60517253:+ chr8:61429495-61536203:+ chr8:61429812:+ ENSG00000228862 ENSG00000228862.5 lncRNA - + chr8:60629662-60653561:- chr8:60646115:+ chr8:61542221-61566120:- chr8:61558674:+ chr8:60554424,chr8:60554423 chr8:60636627,chr8:60636985 NA NA chr8:61466983,chr8:61466982 chr8:61549186,chr8:61549544 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Ras_family(5%)| Arf(0%),MMR_HSR1(0%),Ras(0%),Roc(0%)| 1 1 1 1140 5 ENST00000531289.5 unknown downstream upstream duplicates(2),low_entropy(1),mismatches(1) GGCGGAGGCGCCGCGGCGGCTGTTATTGTTCGGCTGGGCTCGGTCGGGCGCTGTCTCCCTCGGCTCTGCGGGTGTCAGTTCGTCCGGCTTCCTCACAGCCCCTCACTCCCGGCGGCTGACAGCAGCAGCGGCGGCGGCGGGCGGCGCCcGGCGgTTCGcGGgTGAGCGGgACCGGGGgTGGGGgGgGGAGGgGGgGCAGCAGCGGGAGGAGGAGCCGTGTGCCCTGGCACTGAGCGGCCGCGGCCATGGCGTACGCCTATCTCTTCAAGTACATCATAATCGGCGACACAG|GCTACAGCATTACAAGCAACCATAACCATCCACTTAACATCACTAGAGAGAAGCGCTAGACATTGAGATGGCCACACTGTACCAGGAGTG...GGGCTGACAACTCCTCCCGCTGCACGAGTCATCGATAGCATTTCTTCACTGGGCTTTATTACTGTGAAGAAAACCTTTTTATTTCTTTCATGTGATTTGACACTAGGAATTATTAAAAAGAACTTAAAACCAAAG MAYAYLFKYIIIGDT|gysitsnhnhplnitrekr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15200 NPTN::DRAIC ENSG00000156642.17::ENSG00000245750.11 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPTN ENSG00000156642.17 protein_coding - - chr15:73560014-73634134:- chr15:73633125:- chr15:73852355-73926475:- chr15:73925466:- DRAIC ENSG00000245750.11 lncRNA + - chr15:69462921-69843120:+ chr15:69647542:- chr15:69755260-70135459:+ chr15:69939881:- chr15:73623159,chr15:73623161 chr15:69650413,chr15:69650412 NA NA chr15:73915500,chr15:73915502 chr15:69942752,chr15:69942751 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 4 30 53 707 121 ENST00000351217.10 unknown upstream downstream duplicates(5),mismatches(5) GCCTCCCTCGCTCACTCCCTCGCGCACTCGCCCGCCCCCTCCCTCCCTCCCCTCCCTTCCCCGGCCCCGGCTCTGGCCCCGGCCCATTCGCTGTTGGGTCTTCTGCTAGGGAGGATGTCGGGTTCGTCGCTGCCCAGCGCCCTGGCCCTCTCGCTGTTGCTGGTCTCTGGCTCCCTCCTCCCAGGGCCAGGCGCCGCTCAGAACG|ACATCAAGATTCTCTGAAGTCACCTCTTGTGGGACAGCTTCTCCCAAAGCCTGAGATTCCACCACAAGAGCCACTCTTTGGGATTAAGAGCAGAGAGGAAATCTCAGAAGACTAAGGAATCTGCCTGCTCCTCACCTACAGGACAAAAGAGCAAAGGCTGAATCAACAAGCTGACCTGGGGAGGAGCTCTGCAGAGTGTGGTCGGACAATCTCCAGGACCAGGGAAGGCTGGGGTCCCTCATTTTCCTGC MSGSSLPSALALSLLLVSGSLLPGPGAAQN|dikil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15206 NUP93::CYB5B ENSG00000102900.13::ENSG00000103018.18 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1503 FALSE NA FALSE NA NUP93 ENSG00000102900.13 protein_coding + + chr16:56730118-56850286:+ chr16:56805632:+ chr16:56764030-56884198:+ chr16:56839544:+ CYB5B ENSG00000103018.18 protein_coding + + chr16:69398402-69466264:+ chr16:69447150:+ chr16:69432305-69500167:+ chr16:69481053:+ chr16:56806380,chr16:56806381 chr16:69417616,chr16:69417614 NA NA chr16:56840292,chr16:56840293 chr16:69451519,chr16:69451517 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Cytochrome_b5-like_Heme/Steroid_binding_domain(58%) |Cyt-b5(34%) 21 24 23 745 3839 ENST00000308159.10 ENST00000307892.13 downstream upstream duplicates(1),mismatches(1) GGCTTCCTGAAGAATGAGAAGGACAATGCCCTGCTGTCTGCCATCGAAGAGTCCCGGAAGAGG___ACCTTCGGCATGGCTGAGGAGTACCATCGGGAGTCAATGTTGGTTGAGTGGGAGCAAGTGAAACAGCGAATTCTGCACACACTGCTGGCATCAGGAGAAGACGCCCTTGACTTTACTCAAGAAAGCGAG|CACCCTGGAGGAGAAGAGGTTCTGCTGGAACAAGCTGGTGTAGATGCAAGTGAAAGCTTTGAAGATGTAGGACACTCTTCTGATGCCAGAGAAATGCTAAAGCAGTACTACATTGGTGATATCCATCCG___AGTGACCTTAAACCTGAAAGTGGTAGCAAG GFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESE|HPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPESGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15208 FTO::RBFOX1 ENSG00000140718.22::ENSG00000078328.23 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1504 TRUE 2663 TRUE 1030 FTO ENSG00000140718.22 protein_coding + + chr16:53701692-54158512:+ chr16:53934109:+ chr16:53735604-54192424:+ chr16:53968021:+ RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6316995:+ chr16:5289803-7763342:+ chr16:6366996:+ chr16:53950826,chr16:53950824 chr16:6292604,chr16:6292599 NA NA chr16:53984738,chr16:53984736 chr16:6342605,chr16:6342600 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FTO_C-terminal_domain(67%),FTO_catalytic_domain(100%)|Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) FTO_CTD(20%),FTO_NTD(100%)|Fox-1_C(100%),RRM_1(100%),RRM_5(100%) 14 10 5 333 20 ENST00000637969.1 ENST00000641259.1 downstream upstream mismappers(2),mismatches(2),multimappers(2) CCTCGGTTTAGTTCCACCCACCGAGTGGCAGAG___TGCTCAACAGGAACCTTGGATTATATTTTACAACGCTGTCAGTTGGCTCTGCAGAATGTCTGTGACGATGTGGACAATGATGATGTCTCTTT...GGCTGAGGCAGTTTTGGTTTCAAGGCAATCGATACAGAAAGTGCACTGACTGGTGGTGTCAACCCATGGCTCAACTGGAAGCACTGTGGAAGAAGATGGAGGGTGTG___ACAAATGCTGTGCTTCATGAAGTTAAAAGAGAGGGGCTCCCCGTGGAACAAAGGAATGAAATCTTGACTGCCATCCTTGCCTCGCTCACTGCACGCCAGAACCTGAGGAGAGAATGGCATGCCAG|GAAACTGGTCAAAGAACTCATGCAAGTGGAACTTACAGCTTCCTTGATCGGACTCAGCATTCA___GAATTAAAAAGCATCCCTCAAATTGAC LRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHAr|klvkelmqveltasliglsiqn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15209 FTO::RBFOX1 ENSG00000140718.22::ENSG00000078328.23 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2663 TRUE 1030 FTO ENSG00000140718.22 protein_coding + + chr16:53701692-54158512:+ chr16:53888951:+ chr16:53735604-54192424:+ chr16:53922863:+ RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6316995:+ chr16:5289803-7763342:+ chr16:6366996:+ chr16:53950826,chr16:53950824 chr16:6292604,chr16:6292599 NA NA chr16:53984738,chr16:53984736 chr16:6342605,chr16:6342600 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FTO_C-terminal_domain(43%),FTO_catalytic_domain(100%)|Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) FTO_CTD(3%),FTO_NTD(100%)|Fox-1_C(100%),RRM_1(100%),RRM_5(100%) 0 1 3 397 20 ENST00000637969.1 ENST00000641259.1 downstream upstream mismatches(1) GGCTGAGGCAGTTTTGGTTTCAAGGCAATCGATACAGAAAGTGCACTGACTGGTGGTGTCAACCCATGGCTCAACTGGAAGCACTGTGGAAGAAGATGGAGGGTGTG|GAAACTGGTCAAAGAACTCATGCAAGTGGAACTTACAGCTTCCTTGATCGGACTCAGCATTCA___GAATTAAAAAGCATCCCTCAAATTGACAAGAAAAT...AGAAACTGGAGAGCAGAAAGGCAGGTGGCATTAGCATATGTCAGATTTTCAATGAGGACTACGGATATGGCAATATTGGGAAGGTGATCTCTGAATGATGG LRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGV|ETGQRTHASGTYSFLDRTQHSelksipqidkk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15210 STX17::NR4A3 ENSG00000136874.11::ENSG00000119508.18 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1505 FALSE NA FALSE NA STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ NR4A3 ENSG00000119508.18 protein_coding + + chr9:99821855-99866891:+ chr9:99844649:+ chr9:102584137-102629173:+ chr9:102606931:+ chr9:99947207,chr9:99947204,chr9:99947208 chr9:99835928,chr9:99835922,chr9:99835945 NA NA chr9:102709489,chr9:102709486,chr9:102709490 chr9:102598210,chr9:102598204,chr9:102598227 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%) |Hormone_recep(100%) 7 8 4 68 16 ENST00000259400.11 ENST00000618101.4 downstream upstream duplicates(2),mismatches(2) CCCCGGCGGGAG___GTTTTTCTATATGAGTGGAGAAGACAGCTGTTACCAGGGAGGTCATACAACATTTTTTTAGGATGTCTGAAGATGAAGAAAAAGTGAAATTACGCCGTCTTGAACCAGCTATCCAGAAATTCATTAAGATAGTAATCCCAACAGACCTGGAAAGGTTAAGAAAGCACCAGATAAATATTGAGAAG___TATCAAAGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCATATCAATGCAGGACGTACAGTTCAG|TACTGTCCCACTGACCAGGCTGCTGCAGGCACAGATGCTGAGCATGTGCAACAATTCTACAACCTCCTGACAGCCTCCATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCGGGATTTACTGATCTCCCCAAAGAAGATCAGACATTACTTATTGAATCAGCCTTTTTGGAGCTGTTTGTCCTCAGACTTTCCATCAG___GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCTATTAAAG MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQ|YCPTDQAAAGTDAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHRLQCLRGFGEWLDSIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match TRUE Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma LUNG,HEAD_AND_NECK no_match 102677644,102691125 FALSE,TRUE 102587941,102606931 FALSE,TRUE YES,YES CDS-5UTR,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor subfamily 4, group A, member 3 (NOR1) 1 extraskeletal myxoid chondrosarcoma mesenchymal oncogene, fusion translocation 15212 AHRR::ENSG00000290449 ENSG00000063438.20::ENSG00000290449.1 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHRR ENSG00000063438.20 protein_coding + + chr5:321714-438291:+ chr5:376716:+ chr5:321829-438406:+ chr5:376831:+ ENSG00000290449 ENSG00000290449.1 lncRNA - - chr22:23366302-23387731:- chr22:23370462:- chr22:23708489-23729918:- chr22:23712649:- chr5:394860 chr22:23370986 NA NA chr5:394975 chr22:23713173 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Helix-loop-helix_DNA-binding_domain(100%),PAS_fold(9%)| HLH(100%),PAS(0%)| 4 7 3 89 13 ENST00000684583.1 ENST00000415114.1 downstream downstream mismatches(2) TCCAAGCTGGACAAGCTTTCTGTCCTGCGCCTCAGTGTCAGTTACCTCCGGGTGAAGAGCTTCTTCCAAG___TCGTGCAGGAGCAGAGCTCACGGCAGCCTGCGGCCGGCGCCCCCTCGCCCGGAGACAGCTGTCCTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTGGAG|ATgCTGTCTCCCATGGCCGAAGGCTTATTCCACAAAGCCGTCATGGAGAGTGGGGTGGCCATCATCCTTTACCTGAAGGCCCATGATTATGAGAAGAGTGAGGACGTACGAATACTGTTAACACCTTGCcAGCTTCCTCTCCTCAGTTAGGGGAGAATGTGTTCAGGCACC SKLDKLSVLRLSVSYLRVKSFFQVVQEQSSRQPAAGAPSPGDSCPLAGSAVLEGRLLLE|mlspmaeglfhkavmesgvaiilylkahdyeksedvrilltpcqlplls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15213 PDCD6-AHRR::ENSG00000290449 ENSG00000288622.1::ENSG00000290449.1 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:376716:+ chr5:271785-438406:+ chr5:376831:+ ENSG00000290449 ENSG00000290449.1 lncRNA - - chr22:23366302-23387731:- chr22:23370462:- chr22:23708489-23729918:- chr22:23712649:- chr5:394860 chr22:23370986 NA NA chr5:394975 chr22:23713173 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation high none none EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),HLH(100%),PAS(0%)| 4 7 3 89 13 ENST00000505113.6 ENST00000415114.1 downstream downstream mismatches(2) TCCAAGCTGGACAAGCTTTCTGTCCTGCGCCTCAGTGTCAGTTACCTCCGGGTGAAGAGCTTCTTCCAAG___TCGTGCAGGAGCAGAGCTCACGGCAGCCTGCGGCCGGCGCCCCCTCGCCCGGAGACAGCTGTCCTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTGGAG|ATgCTGTCTCCCATGGCCGAAGGCTTATTCCACAAAGCCGTCATGGAGAGTGGGGTGGCCATCATCCTTTACCTGAAGGCCCATGATTATGAGAAGAGTGAGGACGTACGAATACTGTTAACACCTTGCcAGCTTCCTCTCCTCAGTTAGGGGAGAATGTGTTCAGGCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15215 PUS1::ULK1 ENSG00000177192.14::ENSG00000177169.10 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2664 TRUE 1031 PUS1 ENSG00000177192.14 protein_coding + + chr12:131929200-131945896:+ chr12:131939275:+ chr12:132413745-132430441:+ chr12:132423820:+ ULK1 ENSG00000177169.10 protein_coding + + chr12:131894622-131923150:+ chr12:131919212:+ chr12:132379167-132407695:+ chr12:132403757:+ chr12:131940381,chr12:131940378 chr12:131919182,chr12:131919176 NA NA chr12:132424926,chr12:132424923 chr12:132403727,chr12:132403721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Domain_of_unknown_function_(DUF3543)(100%) |DUF3543(100%) 1 0 6 246 121 ENST00000376649.8 ENST00000321867.6 downstream upstream duplicates(1),mismatches(1) CCCGGACAGACAAG___GGTGTGTCCGCAGCCGGCCAGGTGGTATCCCTGAAGGTGTGGCTGATTGACGACATTCTAGAAAAGATCAACAGCCACCTTCCCTCTCACATTCGGATTCTGG|CAAGAGCACACGGAGATCCTGCGTGGCCTGCGCTTCACGCTGCTGTTCGTGCAGCACGTCCTGGAGATCGCAGCCCTGAAGGGCAGCGCCAGTGAGGCGGCGGGGGGCCCTGAGTACCAGCTGCAGGAGAGTGTGGTGGCCGACCAGATCAGCCTGCTGAGCCGAGAATGGGG___CTTCGCGGAACAGCTGGTGCTGTACCTGAAGGTGGCCG RTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRIL|arahgdpawpalhaavraarpgdrspegqrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase ULK1 Other ULK O75385 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15216 PUS1::ULK1 ENSG00000177192.14::ENSG00000177169.10 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2664 TRUE 1031 PUS1 ENSG00000177192.14 protein_coding + + chr12:131929200-131945896:+ chr12:131939275:+ chr12:132413745-132430441:+ chr12:132423820:+ ULK1 ENSG00000177169.10 protein_coding + + chr12:131894622-131923150:+ chr12:131919979:+ chr12:132379167-132407695:+ chr12:132404524:+ chr12:131940381,chr12:131940378 chr12:131919182,chr12:131919176 NA NA chr12:132424926,chr12:132424923 chr12:132403727,chr12:132403721 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Domain_of_unknown_function_(DUF3543)(64%) |DUF3543(67%) 2 2 2 246 167 ENST00000376649.8 ENST00000321867.6 downstream upstream duplicates(1) CCCGGACAGACAAG___GGTGTGTCCGCAGCCGGCCAGGTGGTATCCCTGAAGGTGTGGCTGATTGACGACATTCTAGAAAAGATCAACAGCCACCTTCCCTCTCACATTCGGATTCTGG|TGGTGCGCAGGCTGAATGAGCTGTACAAGGCCAGCGTGGTGTCCTGCC...GCCTGAGCCTGCGGCTGCAGCGCTTCTTCCTGGACAAGCAGCGGCTCCTGGACCGCATTCACAGCATCACTGCCGAGAGGCTCATCTTCAGCCACGCTGTGCAGATGGTACGGGACAGACAGACACCAG...AGATGTTCCAGCACCGTGAGGGCTGCGTCCCACGCTACCACAAGGCCCTGCTGCTCCTGGAGGGGCTGCAGCACATGCTCTCGGACCAGGCCGACATCGAG RTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRIL|vVRRLNELYKASVVSC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase ULK1 Other ULK O75385 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15217 PUS1::ULK1 ENSG00000177192.14::ENSG00000177169.10 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2664 TRUE 1031 PUS1 ENSG00000177192.14 protein_coding + + chr12:131929200-131945896:+ chr12:131939275:+ chr12:132413745-132430441:+ chr12:132423820:+ ULK1 ENSG00000177169.10 protein_coding + + chr12:131894622-131923150:+ chr12:131919472:+ chr12:132379167-132407695:+ chr12:132404017:+ chr12:131940381,chr12:131940378 chr12:131919182,chr12:131919176 NA NA chr12:132424926,chr12:132424923 chr12:132403727,chr12:132403721 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Domain_of_unknown_function_(DUF3543)(87%) |DUF3543(92%) 0 2 2 246 209 ENST00000376649.8 ENST00000321867.6 downstream upstream duplicates(1) CCCGGACAGACAAG___GGTGTGTCCGCAGCCGGCCAGGTGGTATCCCTGAAGGTGTGGCTGATTGACGACATTCTAGAAAAGATCAACAGCCACCTTCCCTCTCACATTCGGATTCTGG|CTTCGCGGAACAGCTGGTGCTGTACCTGAAGGTGGCCGAGCTACTGTCCTCCGGCCTGCAAAGTGCCATCGACCAGATCCGGG...TTCTGCCCCTCCAGCTGCCTGGCTCAGCAGGCGTGGGTGCCACCACCCTCTAGCCCCAGGGCAGCCCCGGAGGACAGGCAAGGGCCTGAGACCACTGCC RTDKGVSAAGQVVSLKVWLIDDILEKINSHLPSHIRIL|asrnswcct* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase ULK1 Other ULK O75385 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15218 STX17::INVS ENSG00000136874.11::ENSG00000119509.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1506 TRUE 2665 TRUE 1032 STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ INVS ENSG00000119509.13 protein_coding + + chr9:100099243-100302175:+ chr9:100226062:+ chr9:102861525-103064457:+ chr9:102988344:+ chr9:99944540,chr9:99944539,chr9:99944540 chr9:100142876,chr9:100142872,chr9:100142874 NA NA chr9:102706822,chr9:102706821,chr9:102706822 chr9:102905158,chr9:102905154,chr9:102905156 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Ankyrin_repeat(41%),Ankyrin_repeats_(3_copies)(66%),IQ_calmodulin-binding_motif(100%) |Ank(2%),Ank_2(12%),Ank_3(95%),Ank_4(9%),Ank_5(16%),IQ(100%) 3 8 2 68 67 ENST00000259400.11 ENST00000262457.7 downstream upstream none CCAGCTATCCAGAAATTCATTAAGATAGTAATCCCAACAGACCTGGAAAGGTTAAGAAAGCACCAGATAAATATTGAGAAG___TATCAAAGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCATATCAATGCAGGACGTACAGTTCAG|GGAAATTATCGTTTCATGAAACTCTTACTTACACGCAGAGCAAACTGGATGCAAAAGGATCTGGAAGAGATGACTCCTTTGCACTTGACCACCCGGCACAGGAGCCCTAAGTGTTTGGCACTTCTGCTGAAGTTT PAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQ|GNYRFMKLLLTRRANWMQKDLEEMTPLHLTTRHRSPKCLALLLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15219 STX17::INVS ENSG00000136874.11::ENSG00000119509.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2665 TRUE 1032 STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ INVS ENSG00000119509.13 protein_coding + + chr9:100099243-100302175:+ chr9:100215401:+ chr9:102861525-103064457:+ chr9:102977683:+ chr9:99944540,chr9:99944539,chr9:99944540 chr9:100142876,chr9:100142872,chr9:100142874 NA NA chr9:102706822,chr9:102706821,chr9:102706822 chr9:102905158,chr9:102905154,chr9:102905156 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none |Ankyrin_repeat(41%),Ankyrin_repeats_(3_copies)(66%),IQ_calmodulin-binding_motif(100%) |Ank(13%),Ank_2(20%),Ank_3(95%),Ank_4(18%),Ank_5(25%),IQ(100%) 3 0 3 68 17 ENST00000259400.11 ENST00000460636.2 downstream upstream mismatches(1) GCGCCGTGCCCACCGACCGGCCTCGAGCGCCCCGGCGGGAG___GTTTTTCTATATGAGTGGAGAAGACAGCTGTTACCAGGGAGGTCATACAACATTTTTTTAGGATGTCTGAAGATGAAGAAAAAGTGAAATTACGCCGTCTTGAACCAGCTATCCAGAAATTCATTAAGATAGTAATCCCAACAGACCTGGAAAGGTTAAGAAAGCACCAGATAAATATTGAGAAG___TATCAAAGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCATATCAATGCAGGACGTACAGTTCAG|GAGGCTACAAGGATGAAATGAACCCTTTCTGAAGGTGGCCACAGTTAGTAAGCAAACTGCTTCATACAGGAGTGTGGACCAGGAGGAG___GGAAATTATCGTTTCATGAAACTCTTACTTACACGCAGAGCAAAC MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQ|eatrmk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15220 STX17::INVS ENSG00000136874.11::ENSG00000119509.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2665 TRUE 1032 STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ INVS ENSG00000119509.13 protein_coding + + chr9:100099243-100302175:+ chr9:100214925:+ chr9:102861525-103064457:+ chr9:102977207:+ chr9:99944540,chr9:99944539,chr9:99944540 chr9:100142876,chr9:100142872,chr9:100142874 NA NA chr9:102706822,chr9:102706821,chr9:102706822 chr9:102905158,chr9:102905154,chr9:102905156 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none |Ankyrin_repeat(41%),Ankyrin_repeats_(3_copies)(66%),IQ_calmodulin-binding_motif(100%) |Ank(13%),Ank_2(20%),Ank_3(95%),Ank_4(19%),Ank_5(25%),IQ(100%) 1 0 3 68 4 ENST00000259400.11 ENST00000460636.2 downstream upstream mismatches(1) GCCGTCTTGAACCAGCTATCCAGAAATTCATTAAGATAGTAATCCCAACAGACCTGGAAAGGTTAAGAAAGCACCAGATAAATATTGAGAAG___TATCAAAGGTGCAGAATCTGGGACAAGTTGCATGAAGAGCATATCAATGCAGGACGTACAGTTCAG|GGGCTGAAGTTGTTGCTTTCCTT RLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQ|glkllls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15222 ENSG00000291015::DMC1 ENSG00000291015.1::ENSG00000100206.11 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000291015 ENSG00000291015.1 lncRNA - - chr22:38335762-38398929:- chr22:38361399:- chr22:38731767-38794934:- chr22:38757404:- DMC1 ENSG00000100206.11 protein_coding - + chr22:38518948-38570204:- chr22:38567604:+ chr22:38914953-38966209:- chr22:38963609:+ chr22:38352851,chr22:38352853 chr22:38540774,chr22:38540772 NA NA chr22:38748856,chr22:38748858 chr22:38936779,chr22:38936777 NA NA sense antisense unknown exon/splice-site CDS inversion/5'-5' high none none none 7 1 4 21 30 ENST00000428294.5 unknown upstream upstream duplicates(1),mismappers(1),mismatches(2) ACTATTTGGAGTTTTCCTCGTCTTACTGGATGTCACTCTCGTCCTTGCCGACCTAATTTTCACTGACAGCAAACTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGCCTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGG|GTCAATATCTTGAAACAAAGATTCCTAAAGGAGATGAAACAGAAAAAATGAAGTTTTGATTCTTCATATCCAGCTATTTCACATCTTTTAAAGAGGTAATTCAATACTATGAGTCACTCCAAAATGCCTCAAATTCCGCTTCTCTAGAGATTGAGGAAGGATCAATACCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15223 BANP::ABCC11 ENSG00000172530.22::ENSG00000121270.16 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:88018667:+ chr16:87982850-88110924:+ chr16:88052273:+ ABCC11 ENSG00000121270.16 protein_coding - + chr16:48165773-48247568:- chr16:48213285:+ chr16:48199684-48281479:- chr16:48247196:+ chr16:88024645 chr16:48190922 NA NA chr16:88058251 chr16:48224833 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none BEN_domain(59%)| BEN(1%)| 2 7 2 226 11 ENST00000286122.11 unknown downstream upstream duplicates(1) ATCGGGAGCAACGTCACGCTCATCACCCTGAACTCGGAAG___AGGACTACCCCAATGGCACCTGGCTGGGCGACGAGAACAACCCCGAGATGCGGGTACGCTGCGCCATCATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCACGGaCGAGAAGATGGCGCTaACGCTGCTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCGGGGCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGT|GCTCCACACCAGCCTTGGAACAGGAGGTCACTGAGTTAGCTAATCCCTCTCTCGACCTAGGCCTTGGCCAGGGGACGTGTTCTGGAGGAACATCATGGGGGCTGAAGGCAGAGGAGCGTCCAAGCAGGGGGCCTACAGCCAGTCCCCTGATGACCTACCTTGAACCTCA IGSNVTLITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTdEKMALTLLDYLFHREVQAVSNLSGQGKHGKKQLDPLTIYGIR|cstpaleqevtelanpsldlglgqgtcsggtswglkaeerpsrgptasplmtylep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15224 TPTEP2-CSNK1E::DMC1 ENSG00000283900.1::ENSG00000100206.11 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPTEP2-CSNK1E ENSG00000283900.1 protein_coding - - chr22:38291918-38398522:- chr22:38361399:- chr22:38687924-38794527:- chr22:38757404:- DMC1 ENSG00000100206.11 protein_coding - + chr22:38518948-38570204:- chr22:38567604:+ chr22:38914953-38966209:- chr22:38963609:+ chr22:38352851,chr22:38352853 chr22:38540774,chr22:38540772 NA NA chr22:38748856,chr22:38748858 chr22:38936779,chr22:38936777 NA NA sense antisense unknown 5'UTR/splice-site CDS inversion/5'-5' high none none none 7 1 3 21 30 ENST00000400206.7 unknown upstream upstream duplicates(1),mismappers(1),mismatches(2) ACTATTTGGAGTTTTCCTCGTCTTACTGGATGTCACTCTCGTCCTTGCCGACCTAATTTTCACTGACAGCAAACTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGCCTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGG|GTCAATATCTTGAAACAAAGATTCCTAAAGGAGATGAAACAGAAAAAATGAAGTTTTGATTCTTCATATCCAGCTATTTCACATCTTTTAAAGAGGTAATTCAATACTATGAGTCACTCCAAAATGCCTCAAATTCCGCTTCTCTAGAGATTGAGGAAGGATCAATACCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15225 AHRR::CES5AP1 ENSG00000063438.20::ENSG00000215478.9 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHRR ENSG00000063438.20 protein_coding + + chr5:321714-438291:+ chr5:376716:+ chr5:321829-438406:+ chr5:376831:+ CES5AP1 ENSG00000215478.9 transcribed_unprocessed_pseudogene - - chr22:23359603-23377014:- chr22:23370462:- chr22:23701790-23719201:- chr22:23712649:- chr5:394860 chr22:23370986 NA NA chr5:394975 chr22:23713173 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Helix-loop-helix_DNA-binding_domain(100%),PAS_fold(9%)| HLH(100%),PAS(0%)| 4 5 1 89 13 ENST00000684583.1 ENST00000400418.7 downstream downstream mismatches(2) TCCAAGCTGGACAAGCTTTCTGTCCTGCGCCTCAGTGTCAGTTACCTCCGGGTGAAGAGCTTCTTCCAAG___TCGTGCAGGAGCAGAGCTCACGGCAGCCTGCGGCCGGCGCCCCCTCGCCCGGAGACAGCTGTCCTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTGGAG|ATgCTGTCTCCCATGGCCGAAGGCTTATTCCACAAAGCCGTCATGGAGAGTGGGGTGGCCATCATCCTTTACCTGAAGGCCCATGATTATGAGAAGAGTGAGGA SKLDKLSVLRLSVSYLRVKSFFQVVQEQSSRQPAAGAPSPGDSCPLAGSAVLEGRLLLE|mlspmaeglfhkavmesgvaiilylkahdyekse NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15226 PDCD6-AHRR::CES5AP1 ENSG00000288622.1::ENSG00000215478.9 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:376716:+ chr5:271785-438406:+ chr5:376831:+ CES5AP1 ENSG00000215478.9 transcribed_unprocessed_pseudogene - - chr22:23359603-23377014:- chr22:23370462:- chr22:23701790-23719201:- chr22:23712649:- chr5:394860 chr22:23370986 NA NA chr5:394975 chr22:23713173 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation high none none EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),HLH(100%),PAS(0%)| 4 5 1 89 13 ENST00000505113.6 ENST00000400418.7 downstream downstream mismatches(2) TCCAAGCTGGACAAGCTTTCTGTCCTGCGCCTCAGTGTCAGTTACCTCCGGGTGAAGAGCTTCTTCCAAG___TCGTGCAGGAGCAGAGCTCACGGCAGCCTGCGGCCGGCGCCCCCTCGCCCGGAGACAGCTGTCCTCTTGCAGGGTCTGCCGTGCTGGAGGGAAGGCTGCTGTTGGAG|ATgCTGTCTCCCATGGCCGAAGGCTTATTCCACAAAGCCGTCATGGAGAGTGGGGTGGCCATCATCCTTTACCTGAAGGCCCATGATTATGAGAAGAGTGAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15231 TTC28::LINC01643 ENSG00000100154.15::ENSG00000236052.2 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28629552:- chr22:28374002-29075828:- chr22:29025540:- LINC01643 ENSG00000236052.2 lncRNA + - chr22:34017422-34218796:+ chr22:34134066:- chr22:34413411-34614785:+ chr22:34530055:- chr22:28596108,chr22:28596110 chr22:34145328,chr22:34145328 NA NA chr22:28992096,chr22:28992098 chr22:34541317,chr22:34541317 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 3 3 58 10 ENST00000397906.7 unknown upstream downstream mismappers(13) CACTATTGGCCAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGATTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACATGAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAG|GCTGGAGTGCAATGGTATGATCTCGGCTCACTGCAACCTGCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCTGGCTAATTTTTTTGTACTTTTAAT...CTCGAACGCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTACGATTACAGGCGTGAGCCACCACACCTGGCCCACAAATCTTTATTTTAGAGATGACTCTACTTAAAAGGGCAAAAAATGT TIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPK|agvqwydlgslqpappgfkrfsclslpsswdyrhppg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15236 RAB11FIP3::FBRS ENSG00000090565.17::ENSG00000156860.16 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE TRUE 1508 TRUE 2667 TRUE 1033 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:489000:+ chr16:475649-573011:+ chr16:539000:+ FBRS ENSG00000156860.16 protein_coding + + chr16:30658431-30670810:+ chr16:30666512:+ chr16:30669752-30682131:+ chr16:30677833:+ chr16:491097,chr16:491098 chr16:30666432,chr16:30666430 NA NA chr16:541097,chr16:541098 chr16:30677753,chr16:30677751 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Autism_susceptibility_gene_2_protein(100%) EF-hand_5(100%)|Auts2(100%) 1 3 1 194 303 ENST00000262305.9 ENST00000356166.11 downstream upstream mismatches(4) CAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCC...CGCCATGGAGGAGCCCGACCATGGTGCCCTGCTGCTGCTCCCAGGCAG___GCCTCACCCCCATGGCCAGTCTGTCATCACGGTGATCGGGGGCGAGGAGCACTTTGAGGACTACGGTGAAGGCAGTGAGGCGGAGCTGTCCCCAGAGACCCTATGCAACGGGCAGCTGGGCTGCAGTGACCCCGCTTTCCTCACGCCCAG|ATCCCCGACCATTTCCGGCCACCTTTGAGG___AAACCAGGGAAGTGGTGTGCCATGCACGTGCGTGTGGCTTACATGATCCTGAGACACCAGGAGAAAATGAAG___GGTGACTCCCACAAGCTTGACTTTCGGAATGACCTCCTGCCCTGCCTTCCGGGGCCCTATGGGGCCCTGCCCCCTGGGCAGGAGCTCTCCCACCCGGCC AMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLTPr|sptisghl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15237 RAB11FIP3::FBRS ENSG00000090565.17::ENSG00000156860.16 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA TRUE 2667 TRUE 1033 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:491096:+ chr16:475649-573011:+ chr16:541096:+ FBRS ENSG00000156860.16 protein_coding + + chr16:30658431-30670810:+ chr16:30666429:+ chr16:30669752-30682131:+ chr16:30677750:+ NA NA NA NA NA NA NA NA sense sense unknown intron exon deletion medium none |Autism_susceptibility_gene_2_protein(100%) EF-hand_5(100%)|Auts2(100%) 2 12 15 50 86 unknown ENST00000570170.1 downstream upstream duplicates(1),mismatches(5) CTCAGGCTGCCCCTGCTTTCTTCTGGGCACCCGACCCAGAGGAGCAGGTGTGTGCAGGGCCCCCTGAGGCTCGAGCTGGTGCCTGTCCTGGGCTCCTGGAGGCAGCTGAGGGATGTGGGCTCACTGCGGTCTAAAGGCAAGAGCCAGAACATTGCACAGCTCATTCTCTCTCCACGTGCTTTTGTTCCACACCATGTCCTGTCCTGTTCCCCTCGGCCCCTCGTGCGGAGTCACAGATGACCACACGGGTC|ac|AGTGGATGCTGTGGAGATGCGAGGCGCCTGGCCCAGGACTCGGGTCTGAGTCGCCTCCCATCTCTCCTTTGCCATCCCCAGATCCCCGACCATTTCCGGCCACCTTTGAGG___AAACCAGGGAAGTGGTGTGCCATGCACGTGCGTGTGGCTTACATGATCCTGAGACACCAGGAGAAAATGAAG___GGTGACTCCCACAAGCTTGACTTTCGGAATGACCTCCTGCCCTGCCTTCCGGGGCCCTATGGGGCCCTGCCCCCTGGGCAGGAGCTCTCCCACCCGGCCTCCCTCTTCACTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15244 STK39::NOSTRIN ENSG00000198648.12::ENSG00000163072.16 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK39 ENSG00000198648.12 protein_coding - - chr2:167954020-168247595:- chr2:168012634:- chr2:168810530-169104105:- chr2:168869144:- NOSTRIN ENSG00000163072.16 protein_coding + - chr2:168786539-168865514:+ chr2:168830670:- chr2:169643049-169722024:+ chr2:169687180:- chr2:167988358,chr2:167988360 chr2:168838171,chr2:168838170 NA NA chr2:168844868,chr2:168844870 chr2:169694681,chr2:169694680 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Oxidative-stress-responsive_kinase_1_C-terminal_domain(83%),Protein_kinase_domain(100%)| ABC1(100%),OSR1_C(51%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 1 0 1 103 5 ENST00000355999.5 unknown upstream downstream none AGAGAAGCTTCTTCTTGTGCCGTGAACCTCGTTTTGAGATTAAG___AAACTCCAGAAAGGAACTTAATGACATACGATTTGAGTTTACTCCAGGAAGAG___ATACAG...CTTGGTGGATGGTCACGATGTAGTTATAG|CCAAAGAGACAGTAATAATAATGATGAAAATGATCTAGACAACTTCCCAGGGAGATCTGATGTAAGTTACAG LVDGHDVVI|aketviimmkmi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE STE20/SPS1-related proline-alanine-rich protein kinase STE STE20 FRAY Q9UEW8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15251 ARLNC1::ENSG00000261436 ENSG00000260896.6::ENSG00000261436.6 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2669 TRUE 1034 ARLNC1 ENSG00000260896.6 lncRNA - - chr16:80826074-80892682:- chr16:80892505:- chr16:80859971-80926579:- chr16:80926402:- ENSG00000261436 ENSG00000261436.6 lncRNA + + chr16:60346478-60499364:+ chr16:60364817:+ chr16:60380382-60533268:+ chr16:60398721:+ chr16:80859002,chr16:80859004 chr16:60347446,chr16:60347444 NA NA chr16:80892899,chr16:80892901 chr16:60381350,chr16:60381348 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 8 0 28 14 ENST00000562231.6 ENST00000661762.1 upstream upstream none GAAGATGTGGCTTGCTCATGCTTGACTTCTGCCATGGTTGTGAGGCCTCCCCAGCCATGTGGAACT|ATGAAAAAATTGAGGCTCAAAGAAGTCCACCAAATTGAGAGTGAAGTAGGGGAAACAGCATTTAACGCTTACATTCTAATGATTTGTGTAAGAGCAGCAGGACAAGCTATACAAAG___AAAAAGGTGGAATTATCAGGATGGAATTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15252 ARLNC1::ENSG00000261436 ENSG00000260896.6::ENSG00000261436.6 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2669 TRUE 1034 ARLNC1 ENSG00000260896.6 lncRNA - - chr16:80826074-80892682:- chr16:80892505:- chr16:80859971-80926579:- chr16:80926402:- ENSG00000261436 ENSG00000261436.6 lncRNA + + chr16:60346478-60499364:+ chr16:60472736:+ chr16:60380382-60533268:+ chr16:60506640:+ chr16:80859002,chr16:80859004 chr16:60347446,chr16:60347444 NA NA chr16:80892899,chr16:80892901 chr16:60381350,chr16:60381348 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 2 0 28 7 ENST00000562231.6 ENST00000659433.1 upstream upstream duplicates(1) GAAGATGTGGCTTGCTCATGCTTGACTTCTGCCATGGTTGTGAGGCCTCCCCAGCCATGTGGAACT|AGTTCTCCCCACATTATTAATGGTATGGGAATTAGGAGAAGGTCATCTGACTCACATGGATCACCATATAATTCCTTCTGGAGAACAG___AAAAAAT...TAAA___AGGTGTTTAACTGAAGATGCAGAAAATTTCAATTGAGGAATGCTAGTCACAATTATACCCACAGCTGATGAGAAGTAACATCAGAAATCTGCCGTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15254 NRG2::UBE2D2 ENSG00000158458.21::ENSG00000131508.17 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NRG2 ENSG00000158458.21 protein_coding - - chr5:139846779-140043299:- chr5:140042370:- chr5:139226364-139422884:- chr5:139421955:- UBE2D2 ENSG00000131508.17 protein_coding + + chr5:139526431-139628434:+ chr5:139614586:+ chr5:138906016-139008019:+ chr5:138994171:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Ubiquitin-conjugating_enzyme(79%) |UQ_con(18%) 1 0 3 57 815 ENST00000541337.5 ENST00000511725.5 upstream upstream duplicates(1) GGCTCCAGCTCCAACAGCACCCGAGAGCCGCCCGCCTCGGGTCGGGTGGCGTTGGTAAAGGTGCTGGACAAGTGGCCGCTCCGGAGCGGGGGGCTGCAGCGCGAGCAGGTGATCAGCGTGGGCTCCTGTGTGCCGCTCGAAAGGAACCAGCGCTACATCTTTTTCCTGGAGCCCACGGAAC...GCCTTTGCCCCCCTCGATACCAACGGCAAAAATCTCAAGAA-GAGGTGGGCAAGATCCTGTGCACTGACTGCG|TGTTCCATTGGCAAGCTACAATAATGGGGCCA___AATGACAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGG AFAPLDTNGKNLKkrwarscalta|csigklq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15258 HSD17B2::CDH1 ENSG00000086696.11::ENSG00000039068.20 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HSD17B2 ENSG00000086696.11 protein_coding + + chr16:82035004-82098534:+ chr16:82035689:+ chr16:82068609-82132139:+ chr16:82069294:+ CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68801670:+ chr16:68771195-68869440:+ chr16:68835573:+ chr16:82064177,chr16:82064173 chr16:68742958,chr16:68742951 NA NA chr16:82097782,chr16:82097778 chr16:68776861,chr16:68776854 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none short_chain_dehydrogenase(3%)|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%),Cadherin_prodomain_like(68%) adh_short(0%)|Cadherin(100%),Cadherin_C(100%),Cadherin_pro(0%) 0 2 0 178 7 ENST00000199936.9 ENST00000261769.10 downstream upstream none CTCGGTGTCATGCTTCCTCATGTATACTTACTTATCTGGCCAAGAATTGTTACCTGTGGATCAGAAGGCAGTCCTGGTGACAG|TGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTC SVSCFLMYTYLSGQELLPVDQKAVLVT|vNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site 15268 NECTIN3::CD96 ENSG00000177707.11::ENSG00000153283.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2671 TRUE 1035 NECTIN3 ENSG00000177707.11 protein_coding + + chr3:111070071-111275563:+ chr3:111147484:+ chr3:110788918-110994410:+ chr3:110866331:+ CD96 ENSG00000153283.13 protein_coding + + chr3:111292719-111665750:+ chr3:111364513:+ chr3:111011566-111384597:+ chr3:111083360:+ chr3:111183444 chr3:111351621 NA NA chr3:110902291 chr3:111070468 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_V-set_domain(100%)| C2-set_2(100%),I-set(100%),Ig_3(100%),V-set(100%),ig(100%)|zf-BED(100%) 1 1 2 175 4 ENST00000493615.5 ENST00000460744.1 downstream upstream none CGAAAAAAAAGACCATCCTATCTTGACAAAGT___GATTGACCTTCCACCCACACATAAACCACCTCCTCTGTATGAAGAACGATCCCCACCTTTGCCTCAGAAAGACCTATTTCAG|AGCCCAGTGCAGCTGAAATCCTAGAAGACCTCACAACTGTGTTAAATTTTCACAGCTGACCACTTAAAGGCAGTTCTCTTCAAATAAGAGGTGAGAAGACCTGGAGTCTGGAGCAAACTGACATATA...ATCTCAGCTCACTGCAACATCTGCCTCCCAGGTTCAAGAGATTCTCCTGCCTCACTTACATAGATGAGTTTGATAACAGTCAAGCTGAAACTAAAAAG RKKRPSYLDKVIDLPPTHKPPPLYEERSPPLPQKDLFQ|spvqlks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15269 NECTIN3::CD96 ENSG00000177707.11::ENSG00000153283.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA TRUE 2671 TRUE 1035 NECTIN3 ENSG00000177707.11 protein_coding + + chr3:111070071-111275563:+ chr3:111072177:+ chr3:110788918-110994410:+ chr3:110791024:+ CD96 ENSG00000153283.13 protein_coding + + chr3:111292719-111665750:+ chr3:111364513:+ chr3:111011566-111384597:+ chr3:111083360:+ chr3:111183444 chr3:111351621 NA NA chr3:110902291 chr3:111070468 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none none |zf-BED(100%) 0 1 0 350 4 ENST00000485303.6 ENST00000460744.1 downstream upstream duplicates(1) CAGCCCCCGACGCCACCTCCGCTGCTGCTGCTGCTCTTCCCGCTGCTGCTCTTCTCCAGGCTCTGTG|AGCCCAGTGCAGCTGAAATCCTAGAAGACCTCAC...ACTGTGTTAAATTTTCACAGCTGACCACTTAAAGGCAGTTCTCTTCAAATAAGAG___AGTCTCACTCTCTCACCCAGGCTGGAGTGCGGTGGCACGATCTCAG QPPTPPPLLLLLFPLLLFSRLC|epsaaeiledl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15275 ZNF587B::ENSG00000268163 ENSG00000269343.9::ENSG00000268163.1 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57438092:- chr19:57949338-57988904:- chr19:57949460:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 1 0 1 5 12 ENST00000594328.1 ENST00000596831.1 downstream downstream none CCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGC...CCGAGGCcCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GAAGAAGCAAGCCATGAGTATCAGGAC...TACAGCAAGTCCTAAGTTCAGTGCTGCCTCTTAGCAGCTCTGTGTCTTTGGACAAGGACTGAACCTCCCTAAGCCTCAGTGCCCTTATGTGTAAAATGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15278 ENSG00000268750::ENSG00000268163 ENSG00000268750.7::ENSG00000268163.1 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ENSG00000268163 ENSG00000268163.1 protein_coding - - chr19:57437970-57477536:- chr19:57438092:- chr19:57949338-57988904:- chr19:57949460:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none none 1 0 1 5 12 ENST00000596498.2 ENST00000596831.1 downstream downstream none CCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGC...CCGAGGCcCCCTACTCAG___GAGCAACTTGGCGAGGTTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GAAGAAGCAAGCCATGAGTATCAGGAC...TACAGCAAGTCCTAAGTTCAGTGCTGCCTCTTAGCAGCTCTGTGTCTTTGGACAAGGACTGAACCTCCCTAAGCCTCAGTGCCCTTATGTGTAAAATGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15281 MIATNB::LARGE1 ENSG00000244625.7::ENSG00000133424.22 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIATNB ENSG00000244625.7 lncRNA + + chr22:26672747-26780893:+ chr22:26693836:+ chr22:27068710-27176856:+ chr22:27089799:+ LARGE1 ENSG00000133424.22 protein_coding - + chr22:33162226-33922841:- chr22:33224943:+ chr22:33558212-34318829:- chr22:33620929:+ chr22:26759378,chr22:26759379 chr22:33186013,chr22:33186005 NA NA chr22:27155341,chr22:27155342 chr22:33581999,chr22:33581991 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' low none none none 1 0 0 14 2 ENST00000450963.5 unknown downstream upstream none CTGACCCAGGATGGATAAAAGTACCCCTTTCATAGAAGGAAGAAAATGGGAACAAAGGTGCTGCTGATCATCTGAGGTTGCCTGCATGGCAGTGAAGAACATGGACCTTTGG|GAAATGCTTAGGTGAGCACAGACCCTGCTGGGTAGGCAAGCACCTGCCAGGTCGCTGACTGGAAACCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15309 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE TRUE 1510 TRUE 2677 TRUE 1036 THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71141556:+ chr15:71389291-72075722:+ chr15:71433895:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:70980101:+ chr15:71145578-71345997:+ chr15:71272440:+ chr15:71151625,chr15:71151626 chr15:70977829,chr15:70977827 NA NA chr15:71443964,chr15:71443965 chr15:71270168,chr15:71270166 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Leucine-rich_repeat(11%) |LRR_9(0%) 10 25 43 91 61 ENST00000261862.8 ENST00000544974.6 downstream upstream duplicates(3),mismatches(3),multimappers(7) GCGGCGCTCGGGGCTGCCCGGCGCCGGGAACCACGCGGGGGCGAGGCGAGGCGAGGCGGCCGCCGGTCGCTCCGGGACGCGGACCGCCAG___GACTTGAACGCAACTCCCAATTGCAGAAAATTGGCAACGTCTCTGAAGAGCCCTTGCTTTTGCCTGGACCCCCAGCATCATGGTTTCCCATTTCATGGGGTCTCTCAG|GAAGAAGAAAGGCGTATGGCATCTGTTTTAGCCAAAAAAGAGGAAGAGAAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAG___GAGAAGAAAAGGTTAACAATTAACAACGTAGCTCGACAGTGGGACTTGC??CAACAACGAGTAGCCAATATTGCTACAAATGAAGATAGAAAAGATTCTGACTCTCCTCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGGAAACAGG___GCCTCTAGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTG MVSHFMGSLr|kkkgvwhlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|TRUE|FALSE,FALSE|FALSE|TRUE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,TRUE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15310 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2677 TRUE 1036 THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71141556:+ chr15:71389291-72075722:+ chr15:71433895:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:71008379:+ chr15:71145578-71345997:+ chr15:71300718:+ chr15:71151625,chr15:71151626 chr15:70977829,chr15:70977827 NA NA chr15:71443964,chr15:71443965 chr15:71270168,chr15:71270166 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 1 0 9 91 170 ENST00000261862.8 ENST00000544974.6 downstream upstream mismatches(2),multimappers(1) CGGGGGCGAGGCGAGGCGAGGCGGCCGCCGGTCGCTCCGGGACGCGGACCGCCAG___GACTTGAACGCAACTCCCAATTGCAGAAAATTGGCAACGTCTCTGAAGAGCCCTTGCTTTTGCCTGGACCCCCAGCATCATGGTTTCCCATTTCATGGGGTCTCTCAG|GCCTCTAGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTGGACGGGGATACACTTTCCCTATATGGCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGTGTTCAAACAGCAGGAATGATCACAACAGTCTCCTTCACTTTCATAGAATTTGATGAAATCGTCCAAGTGCTTCCTAAACTGAAGATTAAGTTTCCTAATTCTCTG___CACCT MVSHFMGSLr|PLDSGLNNALQGLSVIDTYLVEVDGDTLSLYGSGALESLDRNWSVQTAGMITTVSFTFIEFDEIVQVLPKLKIKFPNSLH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|TRUE|FALSE,FALSE|FALSE|TRUE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|TRUE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15311 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2677 TRUE 1036 THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71141556:+ chr15:71389291-72075722:+ chr15:71433895:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:70984094:+ chr15:71145578-71345997:+ chr15:71276433:+ chr15:71151625,chr15:71151626 chr15:70977829,chr15:70977827 NA NA chr15:71443964,chr15:71443965 chr15:71270168,chr15:71270166 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 0 23 91 100 ENST00000261862.8 ENST00000544974.6 downstream upstream mismatches(4),multimappers(7) CAG___...GCCGCCGGTCGCTCCGGGACGCGGACCGCCAG___GACTTGAACGCAACTCCCAATTGCAGAAAATTGGCAACGTCTCTGAAGAGCCCTTGCTTTTGCCTGGACCCCCAGCATCATGGTTTCCCATTTCATGGGGTCTCTCAG|GAGAAGAAAAGGTTAACAATTAACAACGTAGCTCGACAGTGGGACTTG---CAACAACGAGTAGCCAATATTGCTACAAATGAAGATAGAAAAGATTCTGACTCTCCTCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGGAAACAGG___GCCTCTAGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTGGACGGGGA MVSHFMGSLr|rrkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|TRUE|FALSE,FALSE|FALSE|TRUE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15312 DHCR24::USP24 ENSG00000116133.13::ENSG00000162402.15 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE TRUE 1511 TRUE 2678 TRUE 1037 DHCR24 ENSG00000116133.13 protein_coding - - chr1:54849627-54887195:- chr1:54875942:- chr1:55315300-55352868:- chr1:55341615:- USP24 ENSG00000162402.15 protein_coding - - chr1:55066359-55215378:- chr1:55132700:- chr1:55532032-55681051:- chr1:55598373:- chr1:54875301,chr1:54875305 chr1:55134033,chr1:55134034 NA NA chr1:55340974,chr1:55340978 chr1:55599706,chr1:55599707 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FAD_binding_domain_(59%)|Domain_of_unknown_function_(DUF3517)(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) FAD_binding_4(90%)|DUF3517(100%),UCH(100%),UCH_1(100%) 15 21 34 1916 296 ENST00000371269.9 ENST00000294383.7 upstream downstream duplicates(1),mismatches(5),multimappers(4) CAAGAAGACACACAAAAACATCATGATCAACCTGATGGACATTCTGGAAGTGGACACCAAGAAACAG___ATTGTCCGTGTGGAGCCCTTGGTGACCATGGGCCAGGTGACTGCCCTGCTGACCTCCATTGGCTGGACTCTCCCCGTGTTGCCTGAGCTTGATGACCTCACAGTGG|AAAACATTGCTGTCTGAATCAAGTTCTCAGTCCTCAAAATCTCCATCCCTGTCATCAAAGCAACAGCACCAGCCAAGTGCCAGTTCAATTTTAGAAAGTCTGTTTCGATCTTTTGCCCCGGGAATGTCTACCTTCAGAGTGCTCTACAACTTAGAA___GTTCTAAGCTCCAAACTCATGCCAACAGCTGATGATGACATGGCCAGAAGCTGTGCCAAATCCTTC KKTHKNIMINLMDILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTV|eniav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15313 DHCR24::USP24 ENSG00000116133.13::ENSG00000162402.15 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2678 TRUE 1037 DHCR24 ENSG00000116133.13 protein_coding - - chr1:54849627-54887195:- chr1:54883618:- chr1:55315300-55352868:- chr1:55349291:- USP24 ENSG00000162402.15 protein_coding - - chr1:55066359-55215378:- chr1:55132700:- chr1:55532032-55681051:- chr1:55598373:- chr1:54875301,chr1:54875305 chr1:55134033,chr1:55134034 NA NA chr1:55340974,chr1:55340978 chr1:55599706,chr1:55599707 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none FAD_binding_domain_(20%)|Domain_of_unknown_function_(DUF3517)(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) FAD_binding_4(0%)|DUF3517(100%),UCH(100%),UCH_1(100%) 1 1 19 2630 296 ENST00000371269.9 ENST00000294383.7 upstream downstream mismatches(3) GTTCAAGCTCAGCAGCGCTCCGCGCCTGCACGAGCAGCGCGTGCGGGACATCCAGAAGCAG___GTGCGGGAATGGAAGGAGCAGGGTAGCAAGACCTTCATGTGCACGGGGCGCCCTGGCTGGCTCACTGTCTCACTACGTGTCGGGAAGTACAAGAAGACACACAAAAACATCATGATCAACCTGATGGACATTCTGGAAGTGGACACCAAGAAACAG|AAAACATTGCTGTCTGAATCAAGTTCTCAGTCCTCAAAATCTCCATCCCTGTCATCAAAGCAACAGCACCAGCCAAGTGCCAGTTCAATTTTAGAAAGTCTGTTTCGATCTTTTGCCCCGGGAATGTCTACCTTCAGAGTGCTCTACAACTTAGAA___GTTCTAAGCTCCAAACTCATGCCAACAGCTGATGATGACATGGCCAGAAGCTGTGCCAAATCCTTCTGTGAAAACTTCCTCAAAG FKLSSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMDILEVDTKKQ|KTLLSESSSQSSKSPSLSSKQQHQPSASSILESLFRSFAPGMSTFRVLYNLEVLSSKLMPTADDDMARSCAKSFCENFLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15320 PSD3::ENSG00000253557 ENSG00000156011.19::ENSG00000253557.6 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2680 TRUE 1038 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- ENSG00000253557 ENSG00000253557.6 lncRNA - - chr8:19084992-19259469:- chr8:19085078:- chr8:18942502-19116979:- chr8:18942588:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 4 4 5 69 17 ENST00000327040.13 ENST00000520920.5 upstream downstream none CGCCTCTCGGCAGTCCCGGGAGCTCAACAAAGAGCACGCGGCGCTGGCCGCCGGCACTCGCGCCCTGAGGCTGCGGCCCCGGAGCGCCCGGCGGCGGTTTCGGCGCGCGGCCGGGCTGGCGATGGAAGATGGAAGGAAGGAGCGCAGCG|GCTGTCGGTGGAACCATGGGGCTGAGTCACGTCTGCCCACAGCTGCTGCTGTTCGCATCCCTGGGCACTGAGGCCTGAAACTCCACCCTGGCAGGGACCAGCCCGACCCCCCTGGAGGAAATGGCCGGGCAGTTTCAGCAGCAGCAGATGAAAACTTCCTTCCTCTTCATCCAGCTGCGGGCTCCTCCAGCCTGCAC MEGRSAA|avggtmglshvcpqlllfaslgtea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15321 PSD3::ENSG00000253557 ENSG00000156011.19::ENSG00000253557.6 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2680 TRUE 1038 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- ENSG00000253557 ENSG00000253557.6 lncRNA - - chr8:19084992-19259469:- chr8:19086921:- chr8:18942502-19116979:- chr8:18944431:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 0 1 6 69 7 ENST00000327040.13 ENST00000517949.5 upstream downstream none CCAGGGTGCGCGCGGGCCGCCGCCTCTCGGCAGTCCCGGGAGCTCAACAAAGAGCACGCGGCGCTGGCCGCCGGCACTCGCGCCCTGAGGCTGCGGCCCCGGAGCGCCCGGCGGCGGTTTCGGCGCGCGGCCGGGCTGGCGATGGAAGATGGAAGGAAGGAGCGCAGCG|GTACAGGGTCAGCATGACTCAAAAAGATTCCTTTCCCtCTAAGAGGTACTGAGCCTATAGAAATACTCTGAATGTGAGTGAGTCAACTGAATTTTAAG___GCTGTCGGTGGAACCATGGGGCTGAGTCACGTCTG MEGRSAA|vqgqhdskrflsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15322 ATP11A::ENSG00000286385 ENSG00000068650.19::ENSG00000286385.1 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP11A ENSG00000068650.19 protein_coding + + chr13:112690038-112887168:+ chr13:112690455:+ chr13:113344352-113541482:+ chr13:113344769:+ ENSG00000286385 ENSG00000286385.1 lncRNA - + chr13:82778208-83102335:- chr13:83073955:+ chr13:83352343-83676470:- chr13:83648090:+ chr13:112734427,chr13:112734425 chr13:83047976,chr13:83047971 NA NA chr13:113388741,chr13:113388739 chr13:83622111,chr13:83622106 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 4 2 67 6 ENST00000375645.8 unknown downstream upstream mismatches(1) CGCACTAGTACCCCGGAGCCCATGGGCGCGCCGAGCCGGGCGCGGGGGCGCTGAACGGCGGAGCGGGAGCGGCCGGAGGAGCCATGGACTGCAGCCTCGTGCGGACGCTCGTGCACAGATAC|TTCTCCTTACTGCTGCCATGTGAAGAAGGATGTGATTGCTTTCCTTTCTGCCATGATTATAATTTTCCTGAGGCCTCCCCAGCCATGCAGAACTGTGAGTCAATTAAACCTCATTTCTTTATAAATTACCCAGTCTTGGGTATTTCTTCATACCAGCATGAGAATGGAC...GCTCATAGGCAGAAGAGACTTGCCTTGTCTTAGATGAGACTTTGGACATGGATGTTCAAATTAATGCTAAAATGAGTTAAGACTTTGAGAAACTTTTG...GGATGGAATGATATGGTTTGGTCCTGTATTCCCACCCAAATTGTATGTTGAATTATGATCTTAAGTGTTAGAAGAGGGGCTTGGTGGAAGGTGACTGGGTC MDCSLVRTLVHRY|fslllpceegcdcfpfchdynfpeaspamqncesikphffinypvlgissyqheng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15327 NPRL3::HBM ENSG00000103148.17::ENSG00000206177.7 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPRL3 ENSG00000103148.17 protein_coding - - chr16:84271-138677:- chr16:100372:- chr16:134270-188676:- chr16:150370:- HBM ENSG00000206177.7 protein_coding + + chr16:153892-166764:+ chr16:166268:+ chr16:203891-216763:+ chr16:216267:+ chr16:99526 chr16:166086 NA NA chr16:149524 chr16:216085 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Nitrogen_Permease_regulator_of_amino_acid_transport_activity_3(53%)|Globin(74%) NPR3(66%)|Globin(31%) 2 0 0 364 1 ENST00000611875.5 ENST00000356815.4 upstream upstream none GCAGACCCGTCAGTGATAgACgGTCTGCATAAaCTGTCCCGTCGTATCGCCACCGTGCTGCAGCACGAGGAGCGtCGCTGCCAGTACCTCACCCGGGAGGC...CCAGGATGAGGTGTCCGCCATGGCTGATG___GAAATGAAGGTCCTCAGTCCCCATTCCATCACATCCTGCCCAAGTGCAAGCTGGCCAGGGACCTCAAGGAA...CACAAGATCCACTATGCGGCCTCCAGTCTGATCCCCCCAGAGGCCATCGAACGGAGCCTGAAAGCCATCCG|GCTCTTCACGGTGTACCCCAGCA HKIHYAASSLIPPEAIERSLKAIr|LFTVYPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15365 TBL1X::WWC3 ENSG00000101849.18::ENSG00000047644.20 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1512 TRUE 2683 TRUE 1039 TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9654322:+ chrX:9431360-9709077:+ chrX:9622362:+ WWC3 ENSG00000047644.20 protein_coding + + chrX:10015254-10144474:+ chrX:10090771:+ chrX:9983294-10112514:+ chrX:10058811:+ chrX:9673810,chrX:9673809 chrX:10082545,chrX:10082541 NA NA chrX:9641850,chrX:9641849 chrX:10050585,chrX:10050581 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none LisH(53%)| LisH(0%)| 24 46 19 85 111 ENST00000407597.7 ENST00000380861.10 downstream upstream duplicates(4),low_entropy(2),mismatches(3) CCATACATGAAGTCACCATAAG___...CTTGCACCACTTTCAACGTTTGCGAGGGAGAG___AGGGTGGTTCCCACTTCATCAACACCTCATCGCCGCGAGGTGAGGCTAAGATGAGCATAACCAGTGACGAGGTGAACTTTCTGGTGTATCGGTATCTCCAGGAGTCAG|GATTGATCGGAAGATGTCAAGTACTCACACCAGCTACAAACTGGATGAGGCGCAGGCTATCATGAGTGAGCTCCGGACCATCAAGAAGGCCATTTGCACAGGCGAGAAGGAGAGGCGGGACCTGATGCAT___AGCCTGGCCAAGCTGACCGATAGCTTCAAGAACAGCTGCTCCGTTACCGACTCTCTAGTGGAC LHHFQRLRGREGGSHFINTSSPRGEAKMSITSDEVNFLVYRYLQES|gligrcqvltpatnwmrrrls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15366 TBL1X::WWC3 ENSG00000101849.18::ENSG00000047644.20 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2683 TRUE 1039 TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9501849:+ chrX:9431360-9709077:+ chrX:9469889:+ WWC3 ENSG00000047644.20 protein_coding + + chrX:10015254-10144474:+ chrX:10090771:+ chrX:9983294-10112514:+ chrX:10058811:+ chrX:9673810,chrX:9673809 chrX:10082545,chrX:10082541 NA NA chrX:9641850,chrX:9641849 chrX:10050585,chrX:10050581 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none none none 1 0 0 39 111 ENST00000407597.7 ENST00000380861.10 downstream upstream none GAAAATCATACCATATCAGATGCCTCGCAGAGCACCAGGCCCACCGTGAAAG|GATTGATCGGAAGATGTCAAGTACTCACACCAGCTACAAACTGGATGAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15367 DIAPH1::ENSG00000286736 ENSG00000131504.18::ENSG00000286736.1 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIAPH1 ENSG00000131504.18 protein_coding - - chr5:141515016-141619055:- chr5:141571924:- chr5:140894583-140998622:- chr5:140951491:- ENSG00000286736 ENSG00000286736.1 lncRNA - - chr5:141718711-141775187:- chr5:141754366:- chr5:141098278-141154754:- chr5:141133933:- chr5:141561294,chr5:141561299 chr5:141771188,chr5:141771190 NA NA chr5:140940861,chr5:140940866 chr5:141150755,chr5:141150757 NA NA sense sense out-of-frame intron intron duplication high none Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(14%),Formin_Homology_Region_1(100%)| Drf_FH1(100%),Drf_FH3(100%),Drf_GBD(100%),FH2(3%)| 7 5 52 719 9 ENST00000647433.1 unknown upstream downstream duplicates(4),mismatches(3) CCCAGTTCTGCCATTTGGATTAACCCCCAAAAAGCTTTATAAGCCAGAGGTGCAGCTCCGGAGGCCAAACTGGTCCAAG___CTTGTGGCTGAGGACCTCTCCCAGGACTGCTTCTGGACAAAGGTGAAGGAGGACCGCTTTGAGAACAATGAACTTTTCGCCAAACTTACCCTTACCTTCTCTGCCCAGACCAAGAcT|TCCAaAGGGTTCTTGGTTCTTGTTTTATTTTGGGAGAGGACCGCTCCCTTATAGGATGCTCTCCATGGTCCTGAACCAGAGTCCCGGGGCAGAATTACTTCTCAACCTTGAACAAGAGGTGGCTCCTGGCACACATCTCGGAGGCATTCTGACCCGAGTAAGAAAGGAGATGATAGTGAAAGGGAAGG PVLPFGLTPKKLYKPEVQLRRPNWSKLVAEDLSQDCFWTKVKEDRFENNELFAKLTLTFSAQTKt|skgflvlvlfwertapl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15368 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1513 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29848849:- chr17:27952956-28257294:- chr17:28175867:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1218417:+ chr19:1177557-1228430:+ chr19:1218416:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(82%) |Kinase-like(24%),PK_Tyr_Ser-Thr(24%),Pkinase(28%) 17 10 19 83 448 ENST00000540801.6 ENST00000326873.12 upstream upstream duplicates(5),mismappers(1),mismatches(3) CAAGAATGCCCTGCCCGGAACAACCCAGCAGCGCCTAGATGGCTTTGGTCACGGTCCAGCGGTCACCTACCCCCAGCACCACCTCCAGCCCCTGCGCCTCG___AGCTCTCATTTGGAAGACAGTGAATCAGCAGCATTACTTTGCTGTGAATGTGAAGAATCAGAAATCTTTACTGATTCCAAT|GGAAATTCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGAAAAT___GTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTGTGCCAG MALVTVQRSPTPSTTSSPCASSSHLEDSESAALLCCECEESEIFTDSN|gnstteevtaqkchpaggcviqrreaenvygdgvlrvwhagnagqrageafpsvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 15369 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1514 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29929938:- chr17:27952956-28257294:- chr17:28256956:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1218417:+ chr19:1177557-1228430:+ chr19:1218416:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(82%) |Kinase-like(24%),PK_Tyr_Ser-Thr(24%),Pkinase(28%) 9 14 9 415 448 ENST00000540801.6 ENST00000326873.12 upstream upstream duplicates(1),mismatches(7) CGCCCGCCGCCCGTTCGGAGCGTCAGTCGGCGACAGTCTGGTGGTGGGTGCGGAGTCTGCGGCCGTTCCCGCGGCCTCCTCCTCCTCCCCGTTCCCTTCACCCCCACCCCGCACCCCTTTCCCCATCCCGGCTCCGTCACCCTCCCGTCCCCCACACTCAGGACAAGAATGCCCTGCCCGGAACAACCCAGCAGCGCCTAGATGGCTTTGGTCACGGTCCAGCGGTCACCTACCCCCAGCACCACCTCCAGCCCCTGCGCCTCG|GGAAATTCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGAAAAT___GTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTGTGCCAGGCCCACGG___GTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGC MALVTVQRSPTPSTTSSPCAS|gnstteevtaqkchpaggcviqrreaenvygdgvlrvwhagnagqrageafpsvpgprvllsad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 15370 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1515 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29848849:- chr17:27952956-28257294:- chr17:28175867:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1216268:+ chr19:1177557-1228430:+ chr19:1216267:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(82%) |Kinase-like(38%),PK_Tyr_Ser-Thr(38%),Pkinase(42%) 1 2 22 83 20 ENST00000540801.6 ENST00000593219.5 upstream upstream duplicates(3),mismatches(3) GAACAACCCAGCAGCGCCTAGATGGCTTTGGTCACGGTCCAGCGGTCACCTACCCCCAGCACCACCTCCAGCCCCTGCGCCTCG___AGCTCTCATTTGGAAGACAGTGAATCAGCAGCATTACTTTGCTGTGAATGTGAAGAATCAGAAATCTTTACTGATTCCAAT|CTCCTGGCCACTCTGAATCCACTTCCTGGCTCTGGATTGGCTTGTCCTGGATATTGCATAGAAATGGGATCCTGTCGGCCGGGCGCGGTGACTCACGAGAGCAAGAGATCCAGACCATCCTGGCCAACATG___GGAAATTCAACTACTGAGGAG MALVTVQRSPTPSTTSSPCASSSHLEDSESAALLCCECEESEIFTDSN|llatlnplpgsglacpgyciemgscrpgavtheskrsrpswptweiqllr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 15371 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29930159:- chr17:27952956-28257294:- chr17:28257177:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1216268:+ chr19:1177557-1228430:+ chr19:1216267:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Protein_kinase_domain(82%) |Kinase-like(38%),PK_Tyr_Ser-Thr(38%),Pkinase(42%) 0 1 0 196 20 ENST00000582084.1 ENST00000593219.5 upstream upstream none AACCGCCCGCCCGCCGCCCGTTCGGAGCGTCAGTCGGCGACAGTCTGGTG|CTCCTGGCCACTCTGAATCCACTTCCTGGCTCTGGATTGGCTTGTCCTGGATATTGCATAGAAATGGGATCCTGTCGGCCGGGCGCGGTGACTCACGAGAGCAAGAGATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 15377 ERC1::WNT5B ENSG00000082805.21::ENSG00000111186.13 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1190052:+ chr12:1099675-1605099:+ chr12:1299218:+ WNT5B ENSG00000111186.13 protein_coding + + chr12:1529891-1647212:+ chr12:1631298:+ chr12:1639057-1756378:+ chr12:1740464:+ chr12:1227256,chr12:1227249 chr12:1624629,chr12:1624619 NA NA chr12:1336422,chr12:1336415 chr12:1733795,chr12:1733785 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none RIM-binding_protein_of_the_cytomatrix_active_zone(75%)|wnt_family(100%) Cast(42%)|wnt(100%) 6 4 3 153 43 ENST00000543086.7 ENST00000539198.5 downstream upstream mismatches(1) AGCCAGAGCCAGTCCAGAGATGAGTGACCGAATACAGCACTTGGAGAGAGAGATCACCAGGTACAAAGATGAATCTAGCAAGGCCCAGGCAGAAGTTGATCGACTCTTAGAAATCTTGAAGGAGGTGGAAAATGAGAAGAATGACAAAGATAAGAAGATAGCTGAGTTGGAAAG|GGAACCCTACTCTGGAAACTGTCAGTCCCAGGGCACTGGGGAGGGCTGAGGCCGACCATGCCCAGCCTGCTGCTGCTGTTCACGGCTGCTCTGCTGTCCAGCTGGGCTCAGCTTCTGACAGACGCCAACTCCTG ARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELEr|epysgncqsqgtgeg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 15378 ZFHX3::ENSG00000237480 ENSG00000140836.17::ENSG00000237480.3 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2685 TRUE 1041 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73058530:- chr16:72816784-73925770:- chr16:73092429:- ENSG00000237480 ENSG00000237480.3 lncRNA + + chr1:105956694-106124564:+ chr1:106041567:+ chr1:106499316-106667186:+ chr1:106584189:+ chr16:73044383,chr16:73044385,chr16:73044386 chr1:105967577,chr1:105967426,chr1:105967574 NA NA chr16:73078282,chr16:73078284,chr16:73078285 chr1:106510199,chr1:106510048,chr1:106510196 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 0 1 4 3 ENST00000641206.2 ENST00000634380.1 upstream upstream none CCGCCAGCCGCCGCTGCTGCCTTGATGGGCTCCGCGGCCCGAGCGCCTCTTTTCGGGATTAAAAGCGCCGCCAGCTCCCGCCGCCGCCGCCGTCGCCAGCAGCGCCGCTGCAGCCGCCGCCGCCGGAGAAGCAACCGC|AGAATGTGAGTGGAAACTATACGAGCTGCTAACGGGACAAGGCATTTAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 15379 ZFHX3::ENSG00000237480 ENSG00000140836.17::ENSG00000237480.3 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 2685 TRUE 1041 ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:73058530:- chr16:72816784-73925770:- chr16:73092429:- ENSG00000237480 ENSG00000237480.3 lncRNA + + chr1:105956694-106124564:+ chr1:106046554:+ chr1:106499316-106667186:+ chr1:106589176:+ chr16:73044383,chr16:73044385,chr16:73044386 chr1:105967577,chr1:105967426,chr1:105967574 NA NA chr16:73078282,chr16:73078284,chr16:73078285 chr1:106510199,chr1:106510048,chr1:106510196 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 0 1 4 11 ENST00000641206.2 ENST00000634380.1 upstream upstream none CCTTGATGGGCTCCGCGGCCCGAGCGCCTCTTTTCGGGATTAAAAGCGCCGCCAGCTCCCGCCGCCGCCGCCGTCGCCAGCAGCGCCGCTGCAGCCGCCGCCGCCGGAGAAGCAACCGC|GCATGCCCTCAGAACTTTTAAT...CCCTTGGTTCTATACAGATGCTGTCATGAATTCATCTTATATCAGTTTCAT___AAATCTGAGAAAACAAACTAGAGAGAAGGCAACACATATTTCATTTTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 15380 CDKN2A::MTAP ENSG00000147889.18::ENSG00000099810.21 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- MTAP ENSG00000099810.21 protein_coding + - chr9:21802636-21937651:+ chr9:21825670:- chr9:21802635-21937650:+ chr9:21825669:- chr9:21974040,chr9:21974040,chr9:21974040,chr9:21974042,chr9:21974042 chr9:21867205,chr9:21867201,chr9:21867202,chr9:21867205,chr9:21867204 NA NA chr9:21974039,chr9:21974039,chr9:21974039,chr9:21974041,chr9:21974041 chr9:21867204,chr9:21867200,chr9:21867201,chr9:21867204,chr9:21867203 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Cyclin-dependent_kinase_inhibitor_2a_p19Arf_N-terminus(100%)| P19Arf_N(100%)| 2 3 4 62 11 ENST00000579755.2 unknown upstream downstream duplicates(1) AGCGGCTGCCGAGCTCGGCCCTGGAGGCGGCGAGAACATGGgGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|AGACAAGGTCTCACTATGTTGCCCAAGCTGGTCTCAAACTTCTGGGCTCAAGCAATCCTCTTGCTTCAACCTCTCAAAGTGCTAGGATTACAGGCGTGAACCACTGTGCCAGGCCACAATGGCCATTATCAAAATGACAAAACAAAGTAAGTGTTGATGAGGATGTGACAAAAACAGAACCCTTGTATACTGCTGGTAGGAATATAAATTAATACAGCCATTACTAAAATTCCCCAAAAAACTGAAAATATCAACTACCACATGATCCAAGAATCCCA MgRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|etrshyvaqaglkllgssnplastsqsaritgvnhcarpqwplsk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 15391 MCTP1::KIAA0825 ENSG00000175471.20::ENSG00000185261.16 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCTP1 ENSG00000175471.20 protein_coding - - chr5:94703690-95285094:- chr5:94779110:- chr5:94039395-94620798:- chr5:94114815:- KIAA0825 ENSG00000185261.16 protein_coding - - chr5:94150851-94618604:- chr5:94582583:- chr5:93486556-93954309:- chr5:93918288:- chr5:94737617,chr5:94737624 chr5:94617537,chr5:94617541 NA NA chr5:94073322,chr5:94073329 chr5:93953242,chr5:93953246 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none C2_domain(100%)|Domain_of_unknown_function_(DUF4495)(100%) C2(100%)|DUF4495(100%) 1 1 0 54 13 ENST00000429576.6 ENST00000682413.1 upstream downstream mismappers(1) CTTTATCAGAATGAAACGTTGTGTCATGGTGCTGGTAAATGCTGCATACTACGTTAATAGTTGCTTTGATTGGGATTCACCCCCAAGGAGTCTCGCTGCTT...AGGGAAAGATAACAGGCAACGTGATACA___GTAGTGGAGGACATGCTAGAGGACGAGGAAGAAGAAGATGACAAAGATGACAAG|GTACATTTTACATACTTTG?GAAAAAAAAACGTTGCTGAAGTTACTAGAAAAGAGACAGTTCTTCTGCTGACAACTCTTCAGG...AGATACAGTCCGAAATTAACAAACAATGTCCAGGTGTGCAGCTGCAAACAACAACTGACTGCTTTGAATGGCTAACTAACTATAATTACAGTACATCTGAA gkdnrqrdtVVEDMLEDEEEEDDKDDK|vhftyf?kkkrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15405 RFLNA::ENSG00000258077 ENSG00000178882.15::ENSG00000258077.2 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RFLNA ENSG00000178882.15 protein_coding + + chr12:123973241-124316024:+ chr12:124295636:+ chr12:124457788-124800570:+ chr12:124780182:+ ENSG00000258077 ENSG00000258077.2 lncRNA - - chr12:75563202-75984015:- chr12:75631314:- chr12:75956982-76377795:- chr12:76025094:- chr12:124297140,chr12:124297137,chr12:124297135 chr12:75814169,chr12:75814172,chr12:75814172 NA NA chr12:124781686,chr12:124781683,chr12:124781681 chr12:76207949,chr12:76207952,chr12:76207952 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none FAM101_family(33%)| FAM101(1%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%)| 0 1 0 24 74 ENST00000546355.4 ENST00000552856.1 downstream downstream none CGCCGGCGCCTCCTCGGAGCCCCCGGGACCCAGCGAGGCCAGAGCG|GTAAAGAAACCAAGGCTTAGAGACCTGCTCACAGTCGTTTCGTGAGGGAATGCAA...ATCAACAAGGTTATATAGGAATCAAAGCGAGGCGTTTGGAGTAGATGCCGAGATCACCTCTCCCTCACACCTCTGCTGACCCCAGCTACCTGCAATCCcGC AGASSEPPGPSEARA|vkkprlrdlltvvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15411 RAB3B::TXNDC12 ENSG00000169213.7::ENSG00000117862.13 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1516 TRUE 2688 TRUE 1042 RAB3B ENSG00000169213.7 protein_coding - - chr1:51907956-51990700:- chr1:51990552:- chr1:52373628-52456372:- chr1:52456224:- TXNDC12 ENSG00000117862.13 protein_coding - - chr1:52020131-52055191:- chr1:52028630:- chr1:52485803-52520863:- chr1:52494302:- chr1:51987958 chr1:52040285 NA NA chr1:52453630 chr1:52505957 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Thioredoxin-like(85%) |Thioredoxin(100%),Thioredoxin_7(28%) 22 28 24 335 1196 ENST00000371655.4 ENST00000371626.9 upstream downstream mismatches(9) GTGAGGACCTGACCGGACCAGACCATCCCGCAGCGCCCCGCCCCGGCCCCCTCCGCGCCCTCCCGACGCCAGGTCCTGCCGTCCCGCCGACCGTCCGGGAGCGAACCCGTCGTCCCGCACTCGGAGTCCGCG|TGGACTGCCCCTGATGGTGATTATTCATAAATCCTGGTGTGGAGCTTGCAAAG___CTCTAAAGCCCAAATTTGCAGAATCTACGGAAATTTCAGAACTCTCCCATAATTTTGTTATGGTAAATCTTGAG___GATGAAGAGGAACCCAAAGATGAAGATTTCAGCCCTGACGGGGGTTATATTCCACGAATCCTTTTTCTGG___ATCCCAGTGGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15412 RAB3B::TXNDC12 ENSG00000169213.7::ENSG00000117862.13 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2688 TRUE 1042 RAB3B ENSG00000169213.7 protein_coding - - chr1:51907956-51990700:- chr1:51990552:- chr1:52373628-52456372:- chr1:52456224:- TXNDC12 ENSG00000117862.13 protein_coding - - chr1:52020131-52055191:- chr1:52030548:- chr1:52485803-52520863:- chr1:52496220:- chr1:51987958 chr1:52040285 NA NA chr1:52453630 chr1:52505957 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Thioredoxin-like(85%) |Thioredoxin(100%),Thioredoxin_7(38%) 3 1 27 335 17 ENST00000371655.4 ENST00000472624.5 upstream downstream mismatches(2) CGGGAGCCTCAGCCCTCAGGCGCCACTGTGAGGACCTGACCGGACCAGACCATCCCGCAGCGCCCCGCCCCGGCCCCCTCCGCGCCCTCCCGACGCCAGGTCCTGCCGTCCCGCCGACCGTCCGGGAGCGAACCCGTCGTCCCGCACTCGGAGTCCGCG|GATTCATGTGTGAAATGGAAGTCTGGATGAGGCAAACTCAAAAGGCTTTTTCCAACCTTCATTAAGTTGGTTATTGATTGAATTGGGTCTAACCATGGATTCTGGATTACCATTCTAAATTGAAGTAGACTGTAACCGTCAGAAAGAACATTGGTTTTGGAGTCGGACTTCTGAGTTAGCTA___TGGACTGCCCCTGATGGTGATTATTCATAAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15415 LNPEP::ENSG00000247121 ENSG00000113441.16::ENSG00000247121.8 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LNPEP ENSG00000113441.16 protein_coding + + chr5:96935394-97037513:+ chr5:96986670:+ chr5:96271098-96373217:+ chr5:96322374:+ ENSG00000247121 ENSG00000247121.8 lncRNA - + chr5:96814028-96935821:- chr5:96851567:+ chr5:96149731-96271525:- chr5:96187270:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Peptidase_M1_N-terminal_domain(100%)| Peptidase_M1_N(100%)| 4 5 1 98 7 ENST00000231368.10 unknown downstream upstream none AGATCATAAGGGATGAGCAATACACCGCTTTATCAAATATGCCTAAG___AAGTCATCAGTCGTTCTAGATGATGGACTTGTTCAGGATGAGTTTTCTGAGAGTGTGAAGATGAGCACTTACTTGGTTGCTTTCATTGTGGGAGAGATGAAGAACCTGAGTCAGGACaTAAATGGAACCCTG|GCTGGATTCTATAGGTTTGCACCCAAACAACCTATAGGCATGACACAGCAAACCCTCACACAAACACTGGTTTTGCTTTATGAATTCAATCCAAGACAGGGAAAACAGTCTCAATTTTCTGGCACTCTCCCTCTTGAGCCCTGGAACTGGAGAAATTCTATGACAGGCTATTCCTATGTTGAAGTAAGAGATGCACAGTCAAGAAAAGCCAAGAAACTCAAGTAAGTATTGTATGCCGG IIRDEQYTALSNMPKKSSVVLDDGLVQDEFSESVKMSTYLVAFIVGEMKNLSQDiNGTL|agfyrfapkqpigmtqqtltqtlvllyefnprqgkqsqfsgtlplepwnwrnsmtgysyvevrdaqsrkakklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15419 SPATA5::IL21-AS1 ENSG00000145375.9::ENSG00000227145.2 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SPATA5 ENSG00000145375.9 protein_coding + + chr4:122923070-123319433:+ chr4:122938249:+ chr4:123844225-124240588:+ chr4:123859404:+ IL21-AS1 ENSG00000227145.2 lncRNA + + chr4:122618983-122689156:+ chr4:122658726:+ chr4:123540138-123610311:+ chr4:123579881:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none ATPase_family_associated_with_various_cellular_activities_(AAA)(36%)| AAA(2%),RuvB_N(100%)| 1 0 2 32 3 ENST00000274008.5 unknown downstream upstream none CTTAAATGTAATTTTGAATCTGCCAGAGAAGGAAATGAGCAACTTACTGAAGAAGAGAGACTGCTAAAGTTCAGCATAGGAGCAAAGTGCAATACTGATA...GTGGAAAAAAGAGTTGTGGCTTCACTCTTAACACTGATGGATGGCATTGGTTCA|GAAAAAGAAAGAGGTTCACATGGTAATGAAGAAAAAATGAAGGTATA VEKRVVASLLTLMDGIGS|ekergshgneekmkv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15420 RTTN::SOHLH1 ENSG00000176225.15::ENSG00000165643.11 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RTTN ENSG00000176225.15 protein_coding - - chr18:70003031-70205726:- chr18:70017407:- chr18:67670267-67872962:- chr18:67684643:- SOHLH1 ENSG00000165643.11 protein_coding - - chr9:135693407-135704498:- chr9:135699126:- chr9:138585253-138596344:- chr9:138590972:- chr18:70014852,chr18:70014856 chr9:135700401,chr9:135700402 NA NA chr18:67682088,chr18:67682092 chr9:138592247,chr9:138592248 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Rotatin__an_armadillo_repeat_protein__centriole_functioning_(100%)|Helix-loop-helix_DNA-binding_domain(100%) RTTN_N(100%)|HLH(100%) 0 1 1 14 3 ENST00000640769.2 ENST00000298466.9 upstream downstream none GGAGAAGATGGGCAACAAATGATTCTGAGGCTTGATGGCTGTCTAGACTTACTAACAGAGATGAGCAAATACAAGCACAAGAGCAGCCCTTTATTGCCTCT...CAGTCCTGCAAATAAACCCAAGATCCTGGCTAATG|CGGCTCCCTGTCTGGTGCCCTCTCCTGCTGCGAGGACTCGGCCCaGGGCTCGGGCCCGCCCAAGGCCCCTACGGTGGCCGAGGGTCCCAGCTCCTGCCTTCGGCGGAACGTGATCAGCGAGAGGGAGCGCAG...TCCTGCGGCTTGCCAGCGCCCTGGGGCCCAGTCAGGAGCAGCACGCT___GAGGATGTTTTACAGTTGACGTTGTCGAGTCAGATTCAAGCAGGTGTGCCAGAC SPANKPKILAN|aapclvpspaartrprararprplrwprvpapafggt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15441 ENSG00000255746::KDM5A ENSG00000255746.1::ENSG00000073614.13 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255746 ENSG00000255746.1 lncRNA - - chr12:253442-257299:- chr12:256473:- chr12:362608-366465:- chr12:365639:- KDM5A ENSG00000073614.13 protein_coding - - chr12:280057-389320:- chr12:286207:- chr12:389223-498486:- chr12:395373:- chr12:254833,chr12:254839 chr12:286589,chr12:286592 NA NA chr12:363999,chr12:364005 chr12:395755,chr12:395758 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 1 4 24 ENST00000540868.1 ENST00000540838.1 upstream downstream none GTGAAATGGCTCCTTTGCCAAG___CGTCAACATGTGGTAGATCTAATTTGAAATGAGTTCCAGAGCTGAGGCAAGGCTATGATAGAACACAAGGCAAACAGCTGAAAACTGTAGTCAAAAGGCAGGGAAGCTGAGAAAGTGATTCAAAGAAGCCCATCTGAAATCGGAAGCAACAGGGACGCTTTTAGGGAG|GGAGTTGTATTTGTAACGGAAGAAGAGAAGAATAAAAAATATTAGTTTTAAAAGTGGCCTATGTGACTGCTTTTCTAAAAAG___GTAGACTGGGTACAATGTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE lysine (K)-specific demethylase 5A, JARID1A 1 AML leukaemia_lymphoma oncogene, fusion translocation 15452 ADPRHL1::THSD1 ENSG00000153531.15::ENSG00000136114.17 HUTU80 SRR8615847 SRR8652109 SMALL_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADPRHL1 ENSG00000153531.15 protein_coding - - chr13:113399611-113453488:- chr13:113448999:- chr13:114053926-114107803:- chr13:114103314:- THSD1 ENSG00000136114.17 protein_coding - + chr13:52377167-52416373:- chr13:52406494:+ chr13:52951302-52990508:- chr13:52980629:+ chr13:113447653,chr13:113447655 chr13:52406036,chr13:52406034 NA NA chr13:114101968,chr13:114101970 chr13:52980171,chr13:52980169 NA NA sense antisense unknown 5'UTR/splice-site 5'UTR inversion/5'-5' high none ADP-ribosylglycohydrolase(20%)| ADP_ribosyl_GH(14%)| 2 0 1 31 6 ENST00000413169.2 unknown upstream upstream none GACTGGGGCTGCCTCCTTCCGGGTGAGCCTCTCTGAACAGGGCACGAGAGCAGACTCTGAACCAGGAAGTAGCCGTGTCTAGCGCTCTACAAGACACATAGGAGAGGTGGCATCCATGGCCCTGAAACGACAAGCCCATGTTGCCAGCGCATTATCACCAAGTCACTTGGCAAGCGTTTAGCAG|TGTCATTTTCTTCAGGGAGACCACAAAAATAAGTCCTTGAAGCGGCACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15488 PARD3::CUL2 ENSG00000148498.17::ENSG00000108094.17 HUTU80 SRR8615847 SRR8652109 SMALL_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814876:- chr10:34398488-35104253:- chr10:35103804:- CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35016394:- chr10:35297432-35415934:- chr10:35305322:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none N-terminal_of_Par3_and_HAL_proteins(48%)|Cullin_family(13%),Cullin_protein_neddylation_domain(100%) Par3_HAL_N_term(0%)|Cullin(7%),Cullin_Nedd8(100%) 1 1 0 120 343 ENST00000545260.5 ENST00000626172.3 upstream downstream none TGAAAGTGACCGTGTGCTTCGGACGGACCCGGGTGGTCGTGCCGTGCGGGGACGGCCACATGAAAGTTTTCAGCCTCATCCAGCAGGCGGTGACCCGCTACCGGAAGGCCATCGCCAAG|GTGAAGTTAAAATGAACTATTTGGGCAAACCATATGTAGCCATGGTTACAACATACCAAATGGCAGTTCTTCTTGCCTTTAACAACAGTGAAACTGTCAGTTATAAAGAGCTTCAGGACAGCACTCAGATGAATGAAAAGGAACTGACAAAAACAATCAAATCATT KVTVCFGRTRVVVPCGDGHMKVFSLIQQAVTRYRKAIAK|vklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Bladder Urothelial Carcinoma,Breast invasive carcinoma BLADDER,BREAST no_match 34985246,34985246 FALSE,FALSE 35360267,35305322 FALSE,TRUE YES,YES CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15495 CELF1::MTCH2 ENSG00000149187.19::ENSG00000109919.10 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1519 FALSE NA FALSE NA CELF1 ENSG00000149187.19 protein_coding - - chr11:47465933-47565569:- chr11:47552992:- chr11:47487485-47587121:- chr11:47574544:- MTCH2 ENSG00000109919.10 protein_coding - - chr11:47617315-47642607:- chr11:47639051:- chr11:47638867-47664159:- chr11:47660603:- chr11:47529805,chr11:47529807 chr11:47639954,chr11:47639953 NA NA chr11:47551357,chr11:47551359 chr11:47661506,chr11:47661505 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Mitochondrial_carrier_protein(100%) |Mito_carr(100%) 34 36 84 676 959 ENST00000687097.1 ENST00000302503.8 upstream downstream duplicates(19),inconsistently_clipped(7),mismatches(66),multimappers(1) GCGGCAGCGGCGGCGGGACGCGGAGGCTCCCCCGGGATTCGGCCTCAGCAGCGAGGCGGCGGCGGCGGCTGCGGAGGCGCAGGCAGCAACTGAGGCAGCGGCAGGCTCAGGTGCAGCCGCTG|GTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGGCAAGTGTGTCAGCTTCCTGGTCTCTTTAGTTATG___CTCAGCACATTGCCAGTATCGATGGGAGGCGCGGGTTGTTCACAGGCTTAACTCCAAGACTGTGTTCGGGAGTCCTTGGAACTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Breast invasive carcinoma LUNG,BREAST exact 47494640|47508302,47586826 FALSE|FALSE,FALSE 47660603|47652639,47644328 TRUE|FALSE,FALSE PARTIALLY,PARTIALLY Out-of-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15496 AEBP2::DCLK1 ENSG00000139154.16::ENSG00000133083.15 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 1520 TRUE 2705 TRUE 1043 AEBP2 ENSG00000139154.16 protein_coding + + chr12:19404045-19720801:+ chr12:19440370:+ chr12:19556979-19873735:+ chr12:19593304:+ DCLK1 ENSG00000133083.15 protein_coding - - chr13:35768652-36131382:- chr13:35839176:- chr13:36342789-36705519:- chr13:36413313:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(100%) |Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 33 5 458 56 ENST00000266508.14 ENST00000360631.8 downstream downstream duplicates(1),inconsistently_clipped(1),mismatches(2) GACGAGGGCTACGGGACTGGGGGAGGCGGAAGCAGCGCGACCTCCGGGGGCCGGCGGGGCAGCTTGGAGATGTCGTCGGATGGGGAACCCCTGAGCCGCATGGACTCGGAGGACAG|AGCTCTCAGCATGGCGGCTCCTCTACGTCACTTGCGTCCACCAAAGTCTGCAGCTCGATGGATGAGAACGATGGCCCTGGAGAAGGTGATGAGCTTGGGACTTGGTATCTGAGGAGGCAGAGGATGGGTTGGCTAAATTTACTCCAAGAAACTGTGGCTTCTCAAGCGGAATGACATGGACAAGGCTGAGCAGCTCCTGAGGGTCAATCACAAGGGGATAGGGTTGAATATGGTGCCCACCAGGGATTGGTATCTGCTCTGTGAGAATGGGA DEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDr|alsmaaplrhlrppksaarwmrtmalekvmslglgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase DCLK1 CAMK DCAMKL O15075 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15497 AEBP2::DCLK1 ENSG00000139154.16::ENSG00000133083.15 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2705 TRUE 1043 AEBP2 ENSG00000139154.16 protein_coding + + chr12:19404045-19720801:+ chr12:19440727:+ chr12:19556979-19873735:+ chr12:19593661:+ DCLK1 ENSG00000133083.15 protein_coding - - chr13:35768652-36131382:- chr13:35839176:- chr13:36342789-36705519:- chr13:36413313:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(100%) |Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 0 5 12 56 ENST00000360995.8 ENST00000360631.8 downstream downstream mismatches(1) CGGAAACAGTCCCCAAACGGGCCCAGATCCTCTGGCGGAGCAGAAGAGGGCCTTGATGTACACACGTCGGTACTCAAG|AGCTCTCAGCATGGCGGCTCCTCTACGTCACTTGCGTCCACCAAAGTCTGCAGCTCGATGGATGAGAACGATGGCCCTGGAGAAGGTGATGAGCTTGGGACTTGGTATCTGAGGAGGCAGAGGATGGGTTGGCTAAATTTACTCCAAGAAACTGTGGCTTCTCAAGCGGAATGACATGGACAAGGCTGAGCAGCTCCTGAGGGTCAATCACAA MYTRRYSr|alsmaaplrhlrppksaarwmrtmalekvmslglgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase DCLK1 CAMK DCAMKL O15075 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15498 AEBP2::DCLK1 ENSG00000139154.16::ENSG00000133083.15 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2705 TRUE 1043 AEBP2 ENSG00000139154.16 protein_coding + + chr12:19404045-19720801:+ chr12:19440370:+ chr12:19556979-19873735:+ chr12:19593304:+ DCLK1 ENSG00000133083.15 protein_coding - + chr13:35768652-36131382:- chr13:35896627:+ chr13:36342789-36705519:- chr13:36470764:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' low none none none 0 1 1 458 9 ENST00000266508.14 unknown downstream upstream none ACGAGGGCTACGGGACTGGGGGAGGCGGAAGCAGCGCGACCTCCGGGGGCCGGCGGGGCAGCTTGGAGATGTCGTCGGATGGGGAACCCCTGAGCCGCATGGACTCGGAGGACAG|AAAACAGCAAAGTTCGTCTTATTGAGGCATCCAGTAAAGCTCCACAGAGAAATCATTCCCTCGTGTCTCTTCTGCACTCGGCCTTGGCAGGATAAGATGAAGAGGACGCAGTCCCTACCTCAGG EGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDr|kqqsssy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15499 RIOK3::AQP4-AS1 ENSG00000101782.15::ENSG00000260372.7 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIOK3 ENSG00000101782.15 protein_coding + + chr18:23453287-23486603:+ chr18:23473483:+ chr18:21033251-21066567:+ chr18:21053447:+ AQP4-AS1 ENSG00000260372.7 lncRNA + + chr18:26655737-27190698:+ chr18:26764216:+ chr18:24235701-24770662:+ chr18:24344180:+ chr18:23474543 chr18:26758239 NA NA chr18:21054507 chr18:24338203 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none RIO1_family(13%)| RIO1(50%)| 9 5 4 268 32 ENST00000339486.8 ENST00000628174.2 downstream upstream mismatches(2) CTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGATCCCTACAGACCAG___CAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGAT...CACCACCAAACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAAT___TTTGCACCTGAGTTTCAGGTAGGAGATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGAACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCA___...AGGAAAGGAGTC...TTTCATGCATATGGAGGGAG___CATGGAGGATGAAAAGGAAGATAGTAAAGTTATACCTACAGAATGTGCCATCAAG|GAACCTGTGGATTGGATGATTCTGCGTTGTGGCAGCATTGTCAACTGATGGACCCACCAGTTCCTGAATCCTGCTGACTAATGGATCATTGTCAACTTGCTGGAGCTTTGAGGAAGGTCTGTATTTAATCTGTACTGTTCAATGTTTG FHAYGGSMEDEKEDSKVIPTECAIK|epvdwmilrcgsivn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO3 Atypical RIO RIO3 O14730 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15500 ANKRD26::GAD2 ENSG00000107890.17::ENSG00000136750.13 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD26 ENSG00000107890.17 protein_coding - - chr10:26973793-27100494:- chr10:27053320:- chr10:27262722-27389423:- chr10:27342249:- GAD2 ENSG00000136750.13 protein_coding + - chr10:26216665-26304558:+ chr10:26233941:- chr10:26505594-26593487:+ chr10:26522870:- chr10:27052560,chr10:27052562 chr10:26242197,chr10:26242196 NA NA chr10:27341489,chr10:27341491 chr10:26531126,chr10:26531125 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 7 5 5 66 13 ENST00000376087.5 unknown upstream downstream mismatches(2) TTCTGTTCCAAATAAAGCAGGAGGAATGAAGGATGTACAAACATCCAAAGCAG___CTGAACATGACTTAGAAGTAGCATCAGAAGAAGAGCAAGAAAGGGAAGGGAGTGAAAATAACCAGCCACAG|GAGTCTTGGGCCTTGGAAACCTCTCAAAATGTGTGAAGAGAGAACACCCGAAGCAGCGTCTGTCTTGACCCATGGCCTCCCTCTCCTCACTGAGTCAACACAGCAGCCCCTCCATTATCCTTTCTCCCTGCCAGCCAAGCAATTGAGGAAAGAAGCCTCCATGCCAAGATTGATGTTGTCTAGCCGGAGAAAAGG SVPNKAGGMKDVQTSKAAEHDLEVASEEEQEREGSENNQPQ|eswaletsqnv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15501 APOL2::ADM2 ENSG00000128335.14::ENSG00000128165.9 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA APOL2 ENSG00000128335.14 protein_coding - - chr22:36226209-36239954:- chr22:36239441:- chr22:36622255-36636000:- chr22:36635487:- ADM2 ENSG00000128165.9 protein_coding + - chr22:50481543-50486440:+ chr22:50484350:- chr22:50919972-50924869:+ chr22:50922779:- NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site 3'UTR duplication/5'-5' high none none none 7 7 2 183 106 ENST00000249066.10 unknown upstream downstream mismatches(1) TTATTACACAGATGCACAGCTGGACGTGGGATCCACACAGCTCAGAACAGTTGGATCTTGCTCAGTCTCTGTCAGAGGAAGATCCCTTG|GGAGCTGGCCTTGACTGCCTCGCTGTGCGGCCCATCACCCTGACCACCTTTGCTGCAATCCTAGTACATCTCTCAGTGCACGGAGGCCTCCACAGGGCAGGACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15503 PPP2R5B::ENSG00000256615 ENSG00000068971.14::ENSG00000256615.1 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP2R5B ENSG00000068971.14 protein_coding + + chr11:64917553-64934475:+ chr11:64928425:+ chr11:64685025-64701947:+ chr11:64695897:+ ENSG00000256615 ENSG00000256615.1 lncRNA + + chr12:21662313-21760032:+ chr12:21759914:+ chr12:21815247-21912966:+ chr12:21912848:+ chr11:64929360,chr11:64929360 chr12:21729561,chr12:21729558 NA NA chr11:64696832,chr11:64696832 chr12:21882495,chr12:21882492 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(44%)| B56(32%)| 7 4 1 101 10 ENST00000164133.7 ENST00000541860.1 downstream upstream none CCTGAATTTGACCCTGAAGAGGATGAGCCCAATCTTGAGCCTTCGTGGCCACACCTGCAG___CTCCTGGAGCTATTTGATAGTGAGGATCCCCGGGAGCGTGAGTACCTCAAGACCATCCTGCACCGGGTCTATGGCAAGTTCCTGGGTCTCCGGGCCTACATCCGCAAACAGTGCAACCACATCTTCCTCCG|GTTTTATCTTCATCAGCCTGGTCAAAGCTGGATTTCCATCACACATGTGCTCACTCCACGGAACGTGCAAAAGGTCAAGACATACAAACTCAGAGTTTTTAAAATCAAGAATTGAAAGTGGTCCACTAGCTTCTGTTCATAGGACATTGAGCC PEFDPEEDEPNLEPSWPHLQLLELFDSEDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLr|fylhqpgqswisithvltprnvqkvktyklrvfkikn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15506 GRK3::SEZ6L ENSG00000100077.16::ENSG00000100095.19 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GRK3 ENSG00000100077.16 protein_coding + + chr22:25564675-25729294:+ chr22:25695214:+ chr22:25960642-26125261:+ chr22:26091181:+ SEZ6L ENSG00000100095.19 protein_coding + + chr22:26169462-26383597:+ chr22:26292406:+ chr22:26565428-26779563:+ chr22:26688372:+ chr22:25696505,chr22:25696503 chr22:26285327,chr22:26285322 NA NA chr22:26092472,chr22:26092470 chr22:26681293,chr22:26681288 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(74%),Regulator_of_G_protein_signaling_domain(100%)|CUB_domain(100%),Sushi_repeat_(SCR_repeat)(100%) PK_Tyr_Ser-Thr(69%),Pkinase(58%),RGS(100%)|CUB(100%),Sushi(100%) 1 3 4 8 6 ENST00000324198.11 ENST00000248933.11 downstream upstream mismatches(2) AGAATATCAGATCTTGGTCTTGCCTGCGATTTTTCCAAAAAGAAGCCTCATGCGAGTGT___TGGCACCCATGGGTACATGGCTCCCGAGGTGCTGCAGAAGGGGACGGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGCTGCATGCTTTTCAAACTTCTGAGAGG|ATGCTCTTCCCGAGGGAGATGCTAGCCCTTTGGGTCCTTACCTCCTGCCCTCAGGAGCCCCGGAGAGAGGCAGTCCTGGCAAAGAGCACCCTGAAGAGAGAGTGGTAACAGCGCCCCCCAGTTCCTCACAGTCGGCGGAAGTGCTGGGCGAGCTGGTGCTGGATGGGACCGCACCCTCTGCACATCACGACATCCCA RISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRg|cssrgrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Beta-adrenergic receptor kinase 2 AGC GRK BARK P35626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15507 ADGRV1::ITK ENSG00000164199.18::ENSG00000113263.14 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADGRV1 ENSG00000164199.18 protein_coding + + chr5:90529344-91164437:+ chr5:90658278:+ chr5:89825161-90460254:+ chr5:89954095:+ ITK ENSG00000113263.14 protein_coding + + chr5:157142933-157255185:+ chr5:157166088:+ chr5:156569944-156682195:+ chr5:156593099:+ chr5:90671242,chr5:90671243 chr5:157154308,chr5:157154306 NA NA chr5:89967059,chr5:89967060 chr5:156581319,chr5:156581317 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Calx-beta_domain(32%),Concanavalin_A-like_lectin/glucanases_superfamily(100%)|BTK_motif(100%),PH_domain(100%),Protein_kinase_domain(100%),SH2_domain(100%),SH3_domain(100%) Calx-beta(14%),Laminin_G_3(100%)|BTK(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SH2(100%),SH3_1(100%),SH3_10(100%),SH3_2(100%),SH3_9(100%) 2 1 4 16 4 ENST00000405460.9 ENST00000521769.5 downstream upstream none GACAGATTTACAGGTCTGATGCAGGATGTGAGGTCCTATGAGCGGAAACTGACGCTTGAAGAAATTTATGAACTTCATGCCATGCCCGCAAAAAGTGATTTACACCCAATTTCTGGATATCTGGAGTTCAGACAGGGAGAAACTAACAAATCATTCATTATTTCTGCAAGAGATGACAATGACGAGGAAGGgGAAGAAT...GTTTCTGTATATGGAGGAGCTCGTATTTCGGAAGAAAATACTACTGCAAGATTAACAATACAAAAAAGTGACAATGCAAATGGCTTGTTTGGTTTCACAGGAGCTTGTATACCAGAG|GTCCCCCATGGAGGTTTTGAACGCACTCATTGAAGAGTAGCTGTGGG...TCATGGAGCTGGTATACAGACAGTAAACAAGTAATTTTTTTCCTGGTACCTGTGTGCTCAATGATAAACCAATAAATTGAATGGCATCTCCAATGCTG VSVYGGARISEENTTARLTIQKSDNANGLFGFTGACIPE|vphggferth* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase ITK/TSK TK Tec Q08881 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IL2-inducible T-cell kinase 1 peripheral T-cell lymphoma leukaemia_lymphoma fusion translocation 15517 ITPR2::KIAA1549L ENSG00000123104.12::ENSG00000110427.17 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR2 ENSG00000123104.12 protein_coding - - chr12:26335352-26833194:- chr12:26621123:- chr12:26488285-26986127:- chr12:26774056:- KIAA1549L ENSG00000110427.17 protein_coding + - chr11:33376108-33674102:+ chr11:33562359:- chr11:33397654-33695648:+ chr11:33583905:- chr12:26619226 chr11:33562506 NA NA chr12:26772159 chr11:33584052 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Inositol_1_4_5-trisphosphate/ryanodine_receptor(100%),MIR_domain(100%),RIH_domain(56%)| Ins145_P3_rec(100%),MIR(100%),RYDR_ITPR(60%)| 0 1 1 97 5 ENST00000381340.8 unknown upstream downstream none GGCAGATCTAGACCAGCTTCGACTGACAGTAGAAAAGTCTGAGCTATGGGTGGAGAAGAGCAGCAACTATGAGAATGGAGAAATAGGGGAAAGTCAAGTGAAAGGTGGTGAAGAGCCAATTGAG|GCTGGCCACTTTTCCTCCTACAAACATCTGTTC...CCCGAAACTACTGTCTGGCTTTTGAAAAACACAAAGAAGAACTTTTTTGCTGTTCCATAAAGATCCACAGGAAAATGTCAAGGAACAAAAGAGAAAATGCC ADLDQLRLTVEKSELWVEKSSNYENGEIGESQVKGGEEPIE|aghfssykhl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15525 USP12::LINC02340 ENSG00000152484.14::ENSG00000275294.4 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2709 TRUE 1044 USP12 ENSG00000152484.14 protein_coding - - chr13:27066156-27171811:- chr13:27171592:- chr13:27640293-27745948:- chr13:27745729:- LINC02340 ENSG00000275294.4 lncRNA - - chr13:27178263-27251288:- chr13:27190681:- chr13:27752400-27825425:- chr13:27764818:- chr13:27165511,chr13:27165515 chr13:27199789,chr13:27199790 NA NA chr13:27739648,chr13:27739652 chr13:27773926,chr13:27773927 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 31 196 65 291 1031 ENST00000282344.11 ENST00000610335.4 upstream downstream duplicates(35),low_entropy(4),mismappers(2),mismatches(36) CCGCGGGCTGCGGTGCGAGCGGGCGGCCCGGCTCCCCTCCTCCCCCGCCCGCCGCCGCCGCTGTGATTGGGTGGAAGATGGCGCTGGCCGGATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATG|TAATACACAATATTGGCAACAATGCAACAAAAcGGACACACTCTACTCTCCAGCGGGAGT___...AAATATGCCA...___GTTAAAAAAACGAAAAGAAGAGAAAGAAAAAAGGAAAGAAGCAGAAGGAAGAACTCTGCTGCAGTACTGGAAGCAGGCAGATTATTTAAATTACGGTGGTGCCATGGAACAAGAGAAGGCAGATGAAGAGCGACACCCTTCAAGTTAACACAG___GAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGAAGAAGTGGCTCTGGGGGAATTGCGTGCCAGTCTGCGG MEILMTVSKFASICTM|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15526 USP12::LINC02340 ENSG00000152484.14::ENSG00000275294.4 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2709 TRUE 1044 USP12 ENSG00000152484.14 protein_coding - - chr13:27066156-27171811:- chr13:27171592:- chr13:27640293-27745948:- chr13:27745729:- LINC02340 ENSG00000275294.4 lncRNA - - chr13:27178263-27251288:- chr13:27186658:- chr13:27752400-27825425:- chr13:27760795:- chr13:27165511,chr13:27165515 chr13:27199789,chr13:27199790 NA NA chr13:27739648,chr13:27739652 chr13:27773926,chr13:27773927 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 14 35 291 1113 ENST00000282344.11 ENST00000610335.4 upstream downstream duplicates(3),low_entropy(1),mismatches(6) CCGCGGGCTGCGGTGCGAGCGGGCGGCCCGGCTCCCCTCCTCCCCCGCCCGCCGCCGCCGCTGTGATTGGGTGGAAGATGGCGCTGGCCGGATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATG|GTTAAAAAAACGAAAAGAAGAGAAAGAAAAAAGGAAAGAAGCAGAAGGAAGAACTCTGCTGCAGTACTGGAAGCAGGCAGATTATTTAAATTACGGTGGTGCCATGGAACAAGAGAAGGCAGATGAAGAGCGACACCCTTCAAGTTAACACAG___GAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGAAGAAGTGGCTCTGGGGGAATTGCGTGCCAGTCTGCGGCAGGTTGGCTGGAGAAGCAGCCCTGGTTGGAGCTTTGGAGAGACA MEILMTVSKFASICTM|vkktkrrerkkersrrknsaavleagrlfklrwchgtregr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15527 USP12::LINC02340 ENSG00000152484.14::ENSG00000275294.4 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2709 TRUE 1044 USP12 ENSG00000152484.14 protein_coding - - chr13:27066156-27171811:- chr13:27171590:- chr13:27640293-27745948:- chr13:27745727:- LINC02340 ENSG00000275294.4 lncRNA - - chr13:27178263-27251288:- chr13:27186657:- chr13:27752400-27825425:- chr13:27760794:- chr13:27165511,chr13:27165515 chr13:27199789,chr13:27199790 NA NA chr13:27739648,chr13:27739652 chr13:27773926,chr13:27773927 NA NA sense sense out-of-frame intron exon/splice-site duplication high none none none 0 3 35 291 1113 ENST00000282344.11 ENST00000610335.4 upstream downstream duplicates(3) CCCGCGGGCTGCGGTGCGAGCGGGCGGCCCGGCTCCCCTCCTCCCCCGCCCGCCGCCGCCGCTGTGATTGGGTGGAAGATGGCGCTGGCCGGATGGAAATCCTAATGACAGTCTCCAAATTCGCCTCCATCTGTACCATGGT|TaAAAAAAACGAAAAGAAGAGAAAGAAAAAAGGAAAGAAGCAGAAGGAAGAACTCTGCTGCAGTACTGGAAGCAGGCAGATTATTTAAATTACGGTGGTGCCATGGAACAAGAGAAGGCAGATGAAGAGCGACACCCTTCAAGTTAACACAG___GAACAATTAACAATAGAATCCTTAAGATGCAAAACTCCTTGCTGTTTACCAGCAACAGAAGAGAGGAAGAAGTGGCTCTGGGGGAATTG MEILMTVSKFASICTMv|kknekkrkkkgkkqkeelccstgsrqii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15528 ASMTL::P2RY8 ENSG00000169093.16::ENSG00000182162.11 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASMTL ENSG00000169093.16 protein_coding - - chrX:1403139-1453762:- chrX:1435022:- chrX:1522032-1572655:- chrX:1553915:- P2RY8 ENSG00000182162.11 protein_coding - - chrX:1462581-1537185:- chrX:1466582:- chrX:1581474-1656078:- chrX:1585475:- chrX:1433786,chrX:1433794 chrX:1495681,chrX:1495686 NA NA chrX:1552679,chrX:1552687 chrX:1614574,chrX:1614579 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Maf-like_protein(61%)|7_transmembrane_receptor_(rhodopsin_family)(100%) none 2 19 6 602 72 ENST00000534940.6 ENST00000381297.10 upstream downstream duplicates(1),mismatches(8) ACAAGCAGGACGCCTACAGGATGCTGTCCCG___GTTGAGTGGGAGAGAACACAGCGTGTTCACAGGTGTCGCGATCGTCCACTGCTCCAGCAAAG|AGCCCGGGCGAGGACCCCTCCAGGATGCAGGTCCCGAACAGCACCGGCCCGGACAACGCGACGCTGCAGATGCTGCGGAACCCGGCGATCGCGGTGGCCCTGCCCGTGGTGTACTCGCTGGTGGCGGCGGTCAGCATCCCGGGCAACCTCTTCTCTCTGTGGGTGCTGTGCCGGCGCATGGGGCCCAGATCCCCGTCGGTCATCTTCATGATCAACCTGAGCGTCACGGACCTGATGCTGGCCAGCGTGTTGCCTTTCCAAATCTACTACCATTGCAACCGCCACCACTGGGTATTCGGGGTGCTGCTTTGCAACGTGGTGACCGTGGCCTTTTACGCAAACATGTATTCCAGCATCCTCACCATGACCTGTATCAGCGTGG KQDAYRMLSRLSGREHSVFTGVAIVHCSSK|epgrgplqdagpeqhrpgqrdaadaaepgdrggpargvlaggggqhpgqpllsvgavpahgaqipvghlhdqperhgpdagqrvafpnllplqppplgirgaalqrgdrgllrkhvfqhphhdlyqr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE purinergic receptor P2Y, G-protein coupled, 8 1 B-ALL, Down syndrome associated ALL leukaemia_lymphoma oncogene, fusion translocation 15529 ZBTB5::UNC13B ENSG00000168795.5::ENSG00000198722.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 1522 FALSE NA FALSE NA ZBTB5 ENSG00000168795.5 protein_coding - - chr9:37438102-37465450:- chr9:37465215:- chr9:37438099-37465447:- chr9:37465212:- UNC13B ENSG00000198722.15 protein_coding + + chr9:35161992-35405338:+ chr9:35403167:+ chr9:35161989-35405335:+ chr9:35403164:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |C2_domain(35%) |C2(0%) 4 6 12 108 222 ENST00000307750.5 ENST00000617908.4 upstream upstream duplicates(5),low_entropy(1),mismatches(2) GTAACGGAGACGCTGGTCAGGACGTTCCCACCTCCTCTGACACTGCCGAGTCCGATCGGAGAGGGGTCACCGCCTCCTTCAGCGAGGAGGAGGGGGGCGGAGCCCGACTCAG|GGTCTGGTGTGGACGATCCTGTGGGAGAAGTCTCTATTCAGGTGGACTTGTTTACACACCCTGGTACTGGGGAGCACAAGGTCACAGTGAAAG___TGGTGGCTGCCAATGACCTCAAGTGGCAGACAGCGGGTATGTTCCGGCCTTTCGTGGAGGTGACTATGGTTGGCCCACACCAAAGTGATAAGAAGAGGAAGTTCACAACCAAATCCAAAAGCAACAACTGGGCCCCCAAGTACAATGAGAC...CCcCTT___CCTCCTGGGAAATGAGGAGGGGCCCGAGTCCTATGAGTTGCAGATATGCGTGAAGGATTACTGCTTTGCCCGGGAAGATCGCGTGCTAGGGCTGGCTGTGATGCCTCTGAGGGATGTCACAGCCAAGGGCAGCTGTGCCTGCTGGTGCCCCTTGGGCCGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15530 DERA::PTPRO ENSG00000023697.13::ENSG00000151490.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2710 TRUE 1045 DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15982436:+ chr12:16064236-16190315:+ chr12:16135370:+ PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15358505:+ chr12:15475191-15755109:+ chr12:15511439:+ chr12:15992503 chr12:15337866 NA NA chr12:16145437 chr12:15490800 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none DeoC/LacD_family_aldolase(66%)|Fibronectin_type_III_domain(100%),Protein-tyrosine_phosphatase(100%) DeoC(30%)|Y_phosphatase(100%),Y_phosphatase3(100%),fn3(100%) 5 4 13 750 8 ENST00000428559.7 ENST00000674483.1 downstream upstream duplicates(3),mismatches(1) GCTGGATTTCCAGCTGGACAGACTCATTTGAAGACACGATTAGAAGAGATCAGATTGGCTGTGGAAGATGGAGCTACAGAAATCGACGTGGTAATTAACAGAAGCTTGGTGCTGACAGGCCAGTGGGAAG___CCCTGTATGATGAGATTCGTCAGTTTCGCAAGGCCTGTGGGGAGGCTCATCTTAAAACTATATTAGCGACAGGAGAACTTGGAACTCTTACTAATGTCTATAAAGCCAGTATGATAGCAATGATGGCAG|GCAGACCTTCAACCACGACCTGATATTCTTCCTGCTGCAGACAGCCAGCTCTGTTCAGTCAGGCTTTGGATCCTGGAGACTCTCTAATCTAGTTTCTAAGTTTTACAGATGAAGAAATTCTGTGTTACATGAAGTGTCCAAGATCTCACAGTAGCTTAAGCAAAGATAGAAGACAAACCCAGCATTCCCAACTGTTGATATTGTATGCTCTGTGCCTCACTTCATTGTATGTTTTACCTGTTATTTAATGTAACAGATGTTGCTGATAAAATGTGAACAGAAGTTGTCAGTGGCAGGTACAAATCCCAGGCCAACATCGcAAGTTTGgCtCTGTCAGAACTTtTGTTtAGTTTTAGTTACATCTGCTAAGGATTCTAAGCACAGTGTACATGAACCTTCCAAAAGA AGFPAGQTHLKTRLEEIRLAVEDGATEIDVVINRSLVLTGQWEALYDEIRQFRKACGEAHLKTILATGELGTLTNVYKASMIAMMA|grpsttt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15531 DERA::PTPRO ENSG00000023697.13::ENSG00000151490.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2710 TRUE 1045 DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15962947:+ chr12:16064236-16190315:+ chr12:16115881:+ PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15358505:+ chr12:15475191-15755109:+ chr12:15511439:+ chr12:15992503 chr12:15337866 NA NA chr12:16145437 chr12:15490800 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none DeoC/LacD_family_aldolase(48%)|Fibronectin_type_III_domain(100%),Protein-tyrosine_phosphatase(100%) DeoC(6%)|Y_phosphatase(100%),Y_phosphatase3(100%),fn3(100%) 0 2 8 765 8 ENST00000428559.7 ENST00000674483.1 downstream upstream duplicates(1) CGCCGTTTGTGTTTATCCCGCCCGGGTGTGTGATGCTGTAAAAGCACTCAAGGCTGCAGGCTGTAATATCCCTGTGGCATCAG___TGGCCGCTGGATTTCCAGCTGGACAGACTCATTTGAAGACACGATTAGAAGAGATCAGATTGGCTGTGGAAGATGGAGCTACAGAAATCGACGTGGTAATTAACAGAAGCTTGGTGCTGACAGGCCAGTGGGAAG|GCAGACCTTCAACCACGACCTGATATTCTTCCTGCTGCAGACAGCCAGCTCTGTTCAGTCAGGCTTTGG...AGATGAAGAAATTCTGTGTTACATGAAGTGTCCAAGATCTCACAGTAGCTTAAGCAAAGATAGAAGACAAACCCAGCATTCCCAACTGTTGATATTGTATGCTCTGTGCCTCACTTCATTGTATGTTTTACCTGTTATTTAATGTAACAGATGTTGCTGATAAAATGTGAACAGAAGTTGTCAGTGGCAGGTACAAATCCCAGGCCAACATCGAAAGTTTGTCACTGTCAGAACTTCTGTTCAGTTTTA AVCVYPARVCDAVKALKAAGCNIPVASVAAGFPAGQTHLKTRLEEIRLAVEDGATEIDVVINRSLVLTGQWE|grpsttt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15532 DERA::PTPRO ENSG00000023697.13::ENSG00000151490.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2710 TRUE 1045 DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15962947:+ chr12:16064236-16190315:+ chr12:16115881:+ PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15483974:+ chr12:15475191-15755109:+ chr12:15636908:+ chr12:15992503 chr12:15337866 NA NA chr12:16145437 chr12:15490800 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none DeoC/LacD_family_aldolase(48%)|Fibronectin_type_III_domain(100%),Protein-tyrosine_phosphatase(100%) DeoC(6%)|Y_phosphatase(100%),Y_phosphatase3(100%),fn3(100%) 0 1 0 765 1 ENST00000428559.7 ENST00000281171.9 downstream upstream none AATTAACAGAAGCTTGGTGCTGACAGGCCAGTGGGAAG|AATGCTACAGCTTTCCATGTAACTGTCCAAGATGATAATAACATCGTTGTCTCATTAGAAGCT...GTCAGTCACGAACCCAAACAGCACAGAACTG___CCCCTTATCCcCCTCAAAATATTTCCGTTCGTATCGTAAACTTGAACAAAAACAACTGGGAAGAACAGAG INRSLVLTGQWE|ecysfpcncpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15533 LRBA::ENSG00000286066 ENSG00000198589.15::ENSG00000286066.1 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2711 TRUE 1046 LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:151014427:- chr4:151185587-151936879:- chr4:151935579:- ENSG00000286066 ENSG00000286066.1 lncRNA - - chr4:151949338-151991925:- chr4:151963041:- chr4:152870490-152913077:- chr4:152884193:- chr4:150970586,chr4:150970589 chr4:151980734,chr4:151980734 NA NA chr4:151891738,chr4:151891741 chr4:152901886,chr4:152901886 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none none none 2 1 16 123 2 ENST00000357115.9 unknown upstream downstream duplicates(1) CAAATATTCTCCAAGAGGAGGAGGGCGACGCCAAGGACTTTCCACATCAACTGCTTTGGGGTATCTCCACAAGTTGGAAGAGGGACCC?TTCGTTTTGCAT...GTGCTCATTACCAGTGCAGCGACTGCCGTCCCAGGGTGACTCTGAGTTGTCCTTTATCGTGAGCTAGCAATGGCTAGCGAAGACAATCGTGTCCCTTCCCCGCCACCAACAGGTGATGACGGGGGAGGTGGAGGGAGAGAAGAAACCCCTACTGAAGGGGGTGCATTGTCTCTGAAACCAGGGCTCCCCATCAGGGGCATCAGAATGAAATTTGCCGTGTTGACCGGTTTGGTTGAAGTTGGAGAAGTATCCAATAGGGATATTGTAGAAACTGTCTTTAACCTG|ATGCTCTAATGGTCACCTCTATGCCTAATATTTGCACTTGCCAACATAAACAAATAGCTCTAGGTGGAATTACTGTATCAAAGAGCATGCAAAATAGTGGGGACTTCTATACAAATCAACCACGTGGCTGAGATTTGGAATCTGATCTCCTGGAAATATTGAGAGTTTGAG___GTGGCCATAGAACATGTCCTCAATTCTGGACCCACATATCGCTTCAAGTCTGAATGACCCTGGAACCCAG MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNL|ml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15534 LRBA::ENSG00000286066 ENSG00000198589.15::ENSG00000286066.1 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2711 TRUE 1046 LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:151014427:- chr4:151185587-151936879:- chr4:151935579:- ENSG00000286066 ENSG00000286066.1 lncRNA - - chr4:151949338-151991925:- chr4:151949669:- chr4:152870490-152913077:- chr4:152870821:- chr4:150970586,chr4:150970589 chr4:151980734,chr4:151980734 NA NA chr4:151891738,chr4:151891741 chr4:152901886,chr4:152901886 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 1 2 123 7 ENST00000357115.9 ENST00000652265.1 upstream downstream none CTGCCGTCCCAGGGTGACTCTGAGTTGTCCTTTATCGTGAGCTAGCAATGGCTAGCGAAGACAATCGTGTCCCTTCCCCGCCACCAACAGGTGATGACGGGGGAGGgGGAGGGAGAGAAGAAACCCCTACTGAAGGGGGTGCATTGTCTCTGAAACCAGGGCTCCCCATCAGGGGCATCAGAATGAAATTTGCCGTGTTGACCGGTTTGGTTGAAGTTGGAGAAGTATCCAATAGGGATATTGTAGAAACTGTCTTTAACCTG|CTCCTGGAGGCCACCTGCAGTCCTGGGCTCACAATCCCTTCCTCACATCACCAC...ACTACTTACTCTCATCTCCTGGACCCTCTTAGAGGCACAAGAGCCCCTGTGATTACATCAACCCCATCCAGATCATCCAAGATACTCTCCCCATCCTGAGATCCTTAACTTAATCACATCTGTAAAGTCCCTTTGCCATATCAAG MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNL|lleatcspgltipsshh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15536 ENSG00000234768::AFDN ENSG00000234768.1::ENSG00000130396.22 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1523 FALSE NA FALSE NA ENSG00000234768 ENSG00000234768.1 lncRNA + + chr6:168194358-168204501:+ chr6:168194688:+ chr6:168595038-168605181:+ chr6:168595368:+ AFDN ENSG00000130396.22 protein_coding + + chr6:167826893-167972023:+ chr6:167943129:+ chr6:168227573-168372703:+ chr6:168343809:+ chr6:168197072,chr6:168197073 chr6:167932867,chr6:167932865 NA NA chr6:168597752,chr6:168597753 chr6:168333547,chr6:168333545 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |PDZ_domain(80%) |PDZ(4%),PDZ_6(100%) 1 12 0 9 459 ENST00000457340.1 ENST00000515794.3 downstream upstream duplicates(1) ACTATCACGTCGGCAACGCCTGGGTCTTGGAGGGGACACATTCGAACCTCAGCCAGGTACAAGCAG|GGTGCTGGTCAAGATAAACTAGGAATCTATGTGAAGTCGGTTGTGAAAGGAGGTGCTGCAGATGTG___GATGGACGTCTAGCTGCAGGTGATCAGCTCCTCAGTGTGGATGGACGAAGTCTGGTTGGACTCTCTCAGGAAAG___GGCGGCAGAACTCATGACAAGAACAAGCTCTGTGGTGACACTGGAAGTAGCAAAGCAGGGTGCCATCTACCACGGTCTGGCCACCCTTCTCAATCAGCCATCCCCCATGATGCAGAGAA___TTTCAGATCGTCGTGGCTCAGGTAAACCCCGACCAAAGAGTGAAGGCTTTGAGCTCTATAATAATTCAACTCAAAATGGGTCTCCTGAGAGTCCTCAGCTGCCTTGGGCAGAATATAGTGAACCAAAGAAATTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 (AF6) 1 AL leukaemia_lymphoma oncogene, fusion translocation 15538 ENSG00000288684::B4GALT1 ENSG00000288684.1::ENSG00000086062.13 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2712 TRUE 1047 ENSG00000288684 ENSG00000288684.1 protein_coding - - chr9:32455323-32552603:- chr9:32550774:- chr9:32455321-32552601:- chr9:32550772:- B4GALT1 ENSG00000086062.13 protein_coding - - chr9:33104082-33167356:- chr9:33120606:- chr9:33104080-33167354:- chr9:33120604:- chr9:32528821 chr9:33125861 NA NA chr9:32528819 chr9:33125859 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |N-terminal_domain_of_galactosyltransferase(100%),N-terminal_region_of_glycosyl_transferase_group_7(36%) |Glyco_transf_7C(100%),Glyco_transf_7N(25%) 1 0 4 77 288 ENST00000680198.1 ENST00000379731.5 upstream downstream duplicates(3) CTTTCCGCCTGCGGGCCCAGTGAGTCGACACGGTGGGGGCCCGCGATCCCCGGGACTTACCACTGAATAAATCCAGTCCAGCGTGCGACGACTTACTGGCTTCATG___GGGTCGCAGCCGCCGCTGGGGTCTCCG...CGGAGGGTAGGCGGAGAAGTCGCCGGGTACGCCTTCGCGGATCCTGCCGACACCGACCTAGCTTTCTGGGCTGCCGGGAGCTCGCGGCGAGCGCCCCAGCCAGGCCTGCGCCGGCATCCTCCGAG|GCGGGAGACACTATATTCAATCGTGCTAAGCTCCTCAATGTTGGCTTTCAAGAAGCCTTGAAGGACTATGACTACACCTGCTTTGTGTTTAGTGACGTGGACCTCATTCCAATGAATGACCATAATGCGTACAGGTGTTTTTCAC EGRRRSRRVRLRGSCRHRPSFLGCRELAASAPARPAPASSE|AGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15539 ENSG00000288684::B4GALT1 ENSG00000288684.1::ENSG00000086062.13 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2712 TRUE 1047 ENSG00000288684 ENSG00000288684.1 protein_coding - - chr9:32455323-32552603:- chr9:32550774:- chr9:32455321-32552601:- chr9:32550772:- B4GALT1 ENSG00000086062.13 protein_coding - - chr9:33104082-33167356:- chr9:33116113:- chr9:33104080-33167354:- chr9:33116111:- chr9:32528821 chr9:33125861 NA NA chr9:32528819 chr9:33125859 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |N-terminal_domain_of_galactosyltransferase(83%),N-terminal_region_of_glycosyl_transferase_group_7(2%) |Glyco_transf_7C(34%),Glyco_transf_7N(18%) 1 0 3 77 325 ENST00000680198.1 ENST00000379731.5 upstream downstream duplicates(1) GTGGGGGCCCGCGATCCCCGGGACTTACCACTGAATAAATCCAGTCCAGCGTGCGACGACTTACTGGCTTCATG___GGGTCGCAGCCGCCGCTGGGGTCTCCG...GCCCCCGCCTGCTCCCGCTTCGGAGGGTAGGCGGAGAAGTCGCCGGGTACGCCTTCGCGGATCCTGCCGACACCGACCTAGCTTTCTGGGCTGCCGGGAGCTCGCGGCGAGCGCCCCAGCCAGGCCTGCGCCGGCATCCTCCGAG|CCTACCTTATGTTCAGTATTTTGGAGGTGTCTCTGCTCTAAGTAAACAACAGTTTCTAACCATCAATGGATTTCCTAATAATTATTGGGGCTGGGGAGGAGAAGAT PPPAPASEGRRRSRRVRLRGSCRHRPSFLGCRELAASAPARPAPASSE|ptlcsvfwrclcsk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15543 PDCD5::PTPN9 ENSG00000105185.12::ENSG00000169410.11 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDCD5 ENSG00000105185.12 protein_coding + + chr19:32581190-32587453:+ chr19:32582232:+ chr19:33072096-33078359:+ chr19:33073138:+ PTPN9 ENSG00000169410.11 protein_coding - + chr15:75463251-75579315:- chr15:75573611:+ chr15:75755592-75871656:- chr15:75865952:+ chr19:32584497,chr19:32584498 chr15:75532473,chr15:75532471 NA NA chr19:33075403,chr19:33075404 chr15:75824814,chr15:75824812 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Double-stranded_DNA-binding_domain(23%)| dsDNA_bind(15%)| 1 2 2 2019 1 ENST00000590247.7 unknown downstream upstream duplicates(1) GTGACCGCGGCTGCTCCAGCGCTGACGCCGAGCCATGGCGGACGAGGAGCTTGAGGCGCTGAGGAGACAGAGGCTGGCCGAGCTGCAGGCCAAACACGGG___GATCCTGGTGATGCGGCCCAACAGGAAGCAAAGCACAG|CCACTCTGAAAGAAGATGATGCTGCCTGTATACAAATCAAGAGTACAACTACTCTTCATTCATTCTGCAAGTATTTCC___AAATCAAACTGACTCTCAAAAGTACAAGGATTTTCCTACACTGAAGAAATTTCAAAGATTCTGCCACAAGCTTCTAAATCAACTCCAAATAAATGTTAAATTGGTTTGAGCAATAGGGCAGCATTACGGAGTGAATGTGTCAGTTCCCATGAGGACCACTTTGATAAGGC MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHs|hserr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15544 PDCD5::ENSG00000260269 ENSG00000105185.12::ENSG00000260269.5 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDCD5 ENSG00000105185.12 protein_coding + + chr19:32581190-32587453:+ chr19:32582232:+ chr19:33072096-33078359:+ chr19:33073138:+ ENSG00000260269 ENSG00000260269.5 lncRNA - + chr15:75527150-75601205:- chr15:75573611:+ chr15:75819491-75893546:- chr15:75865952:+ chr19:32584497,chr19:32584498 chr15:75532473,chr15:75532471 NA NA chr19:33075403,chr19:33075404 chr15:75824814,chr15:75824812 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Double-stranded_DNA-binding_domain(23%)| dsDNA_bind(15%)| 1 2 2 2019 1 ENST00000590247.7 unknown downstream upstream duplicates(1) GTGACCGCGGCTGCTCCAGCGCTGACGCCGAGCCATGGCGGACGAGGAGCTTGAGGCGCTGAGGAGACAGAGGCTGGCCGAGCTGCAGGCCAAACACGGG___GATCCTGGTGATGCGGCCCAACAGGAAGCAAAGCACAG|CCACTCTGAAAGAAGATGATGCTGCCTGTATACAAATCAAGAGTACAACTACTCTTCATTCATTCTGCAAGTATTTCC___AAATCAAACTGACTCTCAAAAGTACAAGGATTTTCCTACACTGAAGAAATTTCAAAGATTCTGCCACAAGCTTCTAAATCAACTCCAAATAAATGTTAAATTGGTTTGAGCAATAGGGCAGCATTACGGAGTGAATGTGTCAGTTCCCATGAGGACCACTTTGATAAGGC MADEELEALRRQRLAELQAKHGDPGDAAQQEAKHs|hserr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15577 MB21D2::FGF12 ENSG00000180611.7::ENSG00000114279.15 T24 SRR8615858 SRR8670667 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- FGF12 ENSG00000114279.15 protein_coding - - chr3:192139390-192767764:- chr3:192360538:- chr3:191857179-192485553:- chr3:192078327:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Fibroblast_growth_factor(98%) |FGF(34%) 0 2 0 136 3 ENST00000392452.3 ENST00000450716.5 upstream downstream none CGACGACCAGAGAGCGCTGGAGATTCACACAGCCAAGGATTTCATCTTTTCCATGCTGG|AACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATACTTCCTGCAGATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACA___CTCTCTTCAATCTAATTCCCGTGGGCCTGCGTGTAGTGGCCATCCAAGGAGTGAAGGCTAGCCTCTATGTGGCCATG DDQRALEIHTAKDFIFSML|ePQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 15582 ZNF507::DPY19L3 ENSG00000168813.17::ENSG00000178904.19 T24 SRR8615858 SRR8670667 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2721 TRUE 1048 ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32360618:+ chr19:32836500-32878573:+ chr19:32851524:+ DPY19L3 ENSG00000178904.19 protein_coding + + chr19:32405543-32485895:+ chr19:32432716:+ chr19:32896449-32976801:+ chr19:32923622:+ chr19:32365312,chr19:32365313 chr19:32424366,chr19:32424361 NA NA chr19:32856218,chr19:32856219 chr19:32915272,chr19:32915267 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Zinc_finger__C2H2_type(100%)|Q-cell_neuroblast_polarisation(96%) zf-C2H2(100%)|Dpy19(69%) 2 2 2 69 47 ENST00000311921.8 ENST00000392250.7 downstream upstream mismatches(1) TAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG|GAAGTGGAGCGAGAAATCTCATTCAGAACAGAGTGTGGCCTGTATTACTCCTACTACAAGCAGATGCTGCAGGCTCCAACCCTCGTGCAAG___GTTTTCATGGCCTAATATATGATAATAAAACTGAATCTATGAAGACAATTAACCTCCTTCAGCGAATGAATATTTACCAAGA KSSVQKQYRCDVCDYTSTTYVGVRNHRRIHNSDKPYr|kwsekshseqsvacitpttsrccrlqpsckvfma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15583 ZNF507::DPY19L3 ENSG00000168813.17::ENSG00000178904.19 T24 SRR8615858 SRR8670667 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2721 TRUE 1048 ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32360618:+ chr19:32836500-32878573:+ chr19:32851524:+ DPY19L3 ENSG00000178904.19 protein_coding + + chr19:32405543-32485895:+ chr19:32427997:+ chr19:32896449-32976801:+ chr19:32918903:+ chr19:32365312,chr19:32365313 chr19:32424366,chr19:32424361 NA NA chr19:32856218,chr19:32856219 chr19:32915272,chr19:32915267 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Zinc_finger__C2H2_type(100%)|Q-cell_neuroblast_polarisation(96%) zf-C2H2(100%)|Dpy19(76%) 1 0 3 69 6 ENST00000311921.8 ENST00000592503.5 downstream upstream mismatches(1) GCAACTTCTAATGAGCCAAGAATTTCCAGTGATACAGCTGATGGAAAATGTGTCCAGGAAG___GGAATAAGTCTTCAGTCCAGAAACAATATAGATGTGATGTGTGTGATTATACAAGTACAACATATGTTGGTGTCAGAAACCACAGGCGAATCCATAACTCTGATAAGCCGTACAG|AGTTTCACTCCATCACCCAGGCTGGAGTGCAGTGCCGGGATCTCgGCTGACTGCAACTTCCACCTCCCGGATTCAAGCAATTCTCATGCCTCAGCCTCCCAAGTAGCTGGAATTACAGACATGCACCACAATGCCC ATSNEPRISSDTADGKCVQEGNKSSVQKQYRCDVCDYTSTTYVGVRNHRRIHNSDKPYr|vslhhpgwsavpgsrltatstsriqailmpqppk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15594 GATAD2A::MAU2 ENSG00000167491.18::ENSG00000129933.21 SKUT1 SRR8615861 SRR8670775 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 1524 TRUE 2724 TRUE 1049 GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19465614:+ chr19:19496635-19619741:+ chr19:19576423:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19354355:+ chr19:19431638-19469563:+ chr19:19465164:+ chr19:19486895,chr19:19486894 chr19:19352588,chr19:19352581 NA NA chr19:19597704,chr19:19597703 chr19:19463397,chr19:19463390 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cohesin_loading_factor(9%) |Cohesin_load(2%) 72 66 41 1400 364 ENST00000360315.7 ENST00000262815.13 downstream upstream duplicates(17),inconsistently_clipped(4),mismappers(1),mismatches(4) GGACGATGTGGAGAGCAAGAAAATAAAAATGGAGAGAGGATTGTTGGCTTCAGATTTAAACACTGACGGAGACATGAGGGTGACACCTGAGCCGGGAGCAGGTCCAACCCAAGGATTGCTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAGAGGCGAAGGGCTGGTGGGCGATGGGCCCGTGGACATGCGCACCTCACACAG|GAGAGTAACAACATGGTGGTGCCTGCCATGCAGCTCGCCAGCAAGATCCCGGACATGTCGGTACAGCTGTGGTCGTCAGCACTGCTGAGAG___ACCTGAATAAAGCCTGTGGGAACGCCATGGATGCCCATGAAGCCGCCCAGATGCACCAGAACTTCTCGCAGCAGCTGCTCCAGGACCACATTGAGGCCTGCAGCCTCCCCG DDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGLLRATEATAMAMGRGEGLVGDGPVDMRTSHr|rvttwwclpcssparsrtcryscgrqhc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-640 chr19:19435063-19435158:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15595 GATAD2A::MAU2 ENSG00000167491.18::ENSG00000129933.21 SKUT1 SRR8615861 SRR8670775 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 2724 TRUE 1049 GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19427992:+ chr19:19496635-19619741:+ chr19:19538801:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19354355:+ chr19:19431638-19469563:+ chr19:19465164:+ chr19:19486895,chr19:19486894 chr19:19352588,chr19:19352581 NA NA chr19:19597704,chr19:19597703 chr19:19463397,chr19:19463390 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Cohesin_loading_factor(9%) |Cohesin_load(2%) 1 0 0 30 364 ENST00000360315.7 ENST00000262815.13 downstream upstream none GTCGCCTCCGCGGGACGCCACAAGACCTGACCGGACTGCGCCGCCCGAGGCCGTCGGCCGCCGTCAGCGAGGGCGCCGAGCAACTTCG___ATGGAGTCTTATT...GGGcCTACAGtTGgGAcCCcCCGTACCCAGCCTCGAAG|GAGAGTAACAACATGGTGGTGCCTGCCATGCAGCTCGCCAGCAAGATCCCGGACATGTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15600 EPC2::MBD5 ENSG00000135999.12::ENSG00000204406.14 SKUT1 SRR8615861 SRR8670775 SOFT_TISSUE leiomyosarcoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EPC2 ENSG00000135999.12 protein_coding + + chr2:148644440-148787569:+ chr2:148765146:+ chr2:149402009-149545138:+ chr2:149522715:+ MBD5 ENSG00000204406.14 protein_coding + + chr2:148021011-148516971:+ chr2:148468341:+ chr2:148778580-149274540:+ chr2:149225910:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Enhancer_of_polycomb-like(100%)|PWWP_domain(100%) EPL1(100%)|PWWP(100%) 1 1 1 113 14 ENST00000258484.11 ENST00000407073.5 downstream upstream none AAAAG___ATACCATTTGGGAGACTATGGTGGTGAAATCCTTAATGAAGTAAAAATCAGTAGATCAGAAAAAGAGTTATATGCCACTCCAGCAACTCTTCATAA...GGAAATCATCACAAAGTTCAAGAATGTAAAACTAAG___CACCCTCATCATTTGTCTTTGAAAGAAGAGGCTTCTGATGTGGTTCGTCAAAAtAAGAAGTACCC...TGAGACATTGCCTGTGATCAATAAGAGTGACATTAAGCAATATGATTTTCACAGCTCAGATGAAGATGAATTTCCACAG|ATGCAACTCCAGTAGTACCTTCTC...CAACTCCAAGATCAGTAAGAAATAAGTCTCATGAAGGAATTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCAgAT...GAACATGGACAGAAATCTCCATTCCGTGGCAGCCATGGAGGCCTGCCCAGCCCAGCGTCATCAGGTTCCCAGATATATGGAGATGGTTCAATCTCTCCAAG ETLPVINKSDIKQYDFHSSDEDEFPQ|mqlq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 149528956 FALSE 149215772 FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15610 TBCD::FN3K ENSG00000141556.22::ENSG00000167363.14 SKUT1 SRR8615861 SRR8670775 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBCD ENSG00000141556.22 protein_coding + + chr17:82752042-82945914:+ chr17:82756215:+ chr17:80709918-80903790:+ chr17:80714091:+ FN3K ENSG00000167363.14 protein_coding + + chr17:82735615-82751196:+ chr17:82738489:+ chr17:80693491-80709072:+ chr17:80696365:+ chr17:82761725,chr17:82761953 chr17:82737346,chr17:82737546 NA NA chr17:80719601,chr17:80719829 chr17:80695222,chr17:80695422 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication low none |Fructosamine_kinase(90%) |APH(81%),Fructosamin_kin(81%) 1 2 1 414 115 ENST00000682479.1 ENST00000300784.8 downstream upstream low_entropy(1),mismatches(2) ATCCCTGGCTTTCGCGCTCTAGCGGAGTGGGATCTGCGAACACGTGAGGCGGGGGCGCGGTCCCCAGGCTGCCGAGATGGCCCTGAGCGACGAACCGGCCG...CTGGAAGCGTTCGGCGAGAGCGCGGAGACCCGGGCGCTGCTGGGCCGCCTGCGGGAG___TAATAATGGACAAATACCAGGAGCAGCCTCATCTGTTGGACCCGCACCTTG|GCCCGGCAGATGTTTGAGGGGGAGGTGGCCAGCCTGGAGGCCCTCcGGAGCACGGGCCTGGTGCGGGTGCCGAGGCCCATGAAGGTCATCGACCTGCCGGGAGGTGGGGCCGCCTTTGTGATGGAGCATTTGAAGATGAAGAGCTTGAGCAG___TCAAGCATCAAAACTTGGAGAGCAGATGGCAGATTTGCA...GATCCCGGATCTGTTTTGTGGCCTAGAGATTGTCCCCGCGTTGCTCCACGGGGATCTCTGGTCGGGAAACGTGGCTGAGGACGACGTGGGGCCCATTATTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15633 ZC3H15::SLC39A10 ENSG00000065548.18::ENSG00000196950.14 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2730 TRUE 1050 ZC3H15 ENSG00000065548.18 protein_coding + + chr2:186486253-186509361:+ chr2:186495334:+ chr2:187350980-187374088:+ chr2:187360061:+ SLC39A10 ENSG00000196950.14 protein_coding + + chr2:195575977-195737702:+ chr2:195606136:+ chr2:196440701-196602426:+ chr2:196470860:+ chr2:186495709,chr2:186495707 chr2:195591298,chr2:195591289 NA NA chr2:187360436,chr2:187360434 chr2:196456022,chr2:196456013 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |ZIP_Zinc_transporter(100%) |Zip(100%) 41 34 59 328 103 ENST00000337859.11 ENST00000458054.1 downstream upstream duplicates(4),mismatches(7) GGCCAGAACCCCTGACGGTATTCAGCTGCGCGTAAGTCTGGCCGGTGCCATCTGTCTCCGCAATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAAAAAAAGAAGGAGAAGATTATCGAA___GACAAAACTTTCGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACACATCAAGTTAAATTTGGTCAACAAAATCCACGTCAG|CCCCTGGACCTGAGAGGCTTCAATAATTGTTACCTGAGTTGGATTGAATTGAAATAAAGAAGTAAAGATCCTATATCATCTACTGAAATCTTTAAAGG___GAAAAATAGAAATGAAGGTACATATGCACACAAAATTTTGCCTCATTTGTTTGCTGACATTTATTTTTCATCATTGCAACCATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAG MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQ|pldlrgfnncylswielk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15634 ZC3H15::SLC39A10 ENSG00000065548.18::ENSG00000196950.14 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2730 TRUE 1050 ZC3H15 ENSG00000065548.18 protein_coding + + chr2:186486253-186509361:+ chr2:186495334:+ chr2:187350980-187374088:+ chr2:187360061:+ SLC39A10 ENSG00000196950.14 protein_coding + + chr2:195575977-195737702:+ chr2:195680032:+ chr2:196440701-196602426:+ chr2:196544756:+ chr2:186495709,chr2:186495707 chr2:195591298,chr2:195591289 NA NA chr2:187360436,chr2:187360434 chr2:196456022,chr2:196456013 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |ZIP_Zinc_transporter(100%) |Zip(100%) 2 1 22 328 408 ENST00000337859.11 ENST00000458054.1 downstream upstream mismatches(1) CCGGTGCCATCTGTCTCCGCAATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAAAAAAAGAAGGAGAAGATTATCGAA___GACAAAACTTTCGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACACATCAAGTTAAATTTGGTCAACAAAATCCACGTCAG|GAAAAATAGAAATGAAGGTACATATGCACACAAAATTTTGCCTCATTTGTTTGCTGACATTTATTTTTCATCATTGCAACCATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAGACAGCATCGTGGAATGACAGAATTGGAGCCAAGCAAATTTTCAAAGCAAGCTGCTGAAAATGAAAAAAAATACTATATTGAAAAACTTTTTGAGCGTTATGGTGAAAATGGAAGATTATCCTTTTTTGGTTTGGA MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQ|ek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15639 UHRF1::BICRA ENSG00000276043.5::ENSG00000063169.12 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4929476:+ chr19:4903092-4962165:+ chr19:4929488:+ BICRA ENSG00000063169.12 protein_coding + - chr19:47608196-47703277:+ chr19:47682542:- chr19:48111453-48206534:+ chr19:48185799:- chr19:4930728 chr19:47689507 NA NA chr19:4930740 chr19:48192764 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Tandem_tudor_domain_within_UHRF1(2%),Ubiquitin_family(100%)| TTD(0%),ubiquitin(100%)| 67 15 11 360 57 ENST00000612630.4 unknown downstream downstream duplicates(4),mismatches(3) AGGCCTGCAGAGGCTGTTCTACAGGGGCAAACAG___ATGGAGGACGGCCATACCCTCTTCGACTACGAGGTCCGCCTGAATGACACCATCCAGCTCCTGGTCCGCCAGAGCCTCGTGCTCCCCCACAGCACCAAGGAGCGGGACTCCGAGCTCTCCGACACCGACTCCGGCTGCTGCCTGGGCCAGAGTGAGTCAGACAAGTCCTCCACCCACGGTGAGGCGGCCGCCGAGACTGACAGCAGGCCAGCCGATGAGGACATGTGGGATGAGACGGAATTGGGGCTGTACAAG|ATAACAAATGCAAGAAACCACCTTGGGAGGACAACAGGAGGCCACGGTTCAGGAGACGGGGGCTTTCCACTATGCATCTTTTTGTACCGTTTGAAATGTGA GLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQSLVLPHSTKERDSELSDTDSGCCLGQSESDKSSTHGEAAAETDSRPADEDMWDETELGLYK|itnarnhlgrttgghgsgdggfplciflyrlkc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15640 UHRF1::ENSG00000268746 ENSG00000276043.5::ENSG00000268746.1 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4929476:+ chr19:4903092-4962165:+ chr19:4929488:+ ENSG00000268746 ENSG00000268746.1 lncRNA + - chr19:47607524-47733098:+ chr19:47682542:- chr19:48110781-48236355:+ chr19:48185799:- chr19:4930728 chr19:47689507 NA NA chr19:4930740 chr19:48192764 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Tandem_tudor_domain_within_UHRF1(2%),Ubiquitin_family(100%)| TTD(0%),ubiquitin(100%)| 67 15 10 360 57 ENST00000612630.4 unknown downstream downstream duplicates(4),mismatches(3) AGGCCTGCAGAGGCTGTTCTACAGGGGCAAACAG___ATGGAGGACGGCCATACCCTCTTCGACTACGAGGTCCGCCTGAATGACACCATCCAGCTCCTGGTCCGCCAGAGCCTCGTGCTCCCCCACAGCACCAAGGAGCGGGACTCCGAGCTCTCCGACACCGACTCCGGCTGCTGCCTGGGCCAGAGTGAGTCAGACAAGTCCTCCACCCACGGTGAGGCGGCCGCCGAGACTGACAGCAGGCCAGCCGATGAGGACATGTGGGATGAGACGGAATTGGGGCTGTACAAG|ATAACAAATGCAAGAAACCACCTTGGGAGGACAACAGGAGGCCACGGTTCAGGAGACGGGGGCTTTCCACTATGCATCTTTTTGTACCGTTTGAAATGTGA GLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQSLVLPHSTKERDSELSDTDSGCCLGQSESDKSSTHGEAAAETDSRPADEDMWDETELGLYK|itnarnhlgrttgghgsgdggfplciflyrlkc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15641 RAB11B::TMOD3 ENSG00000185236.12::ENSG00000138594.14 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11B ENSG00000185236.12 protein_coding + + chr19:8389981-8404434:+ chr19:8390456:+ chr19:8454865-8469318:+ chr19:8455340:+ TMOD3 ENSG00000138594.14 protein_coding + + chr15:51829628-51947295:+ chr15:51934250:+ chr15:52121825-52239492:+ chr15:52226447:+ chr19:8393772,chr19:8393772 chr15:51933769,chr15:51933766 NA NA chr19:8458656,chr19:8458656 chr15:52225966,chr15:52225963 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Ras_family(0%)| Arf(0%),MMR_HSR1(0%),Ras(0%),Roc(0%)| 8 70 1 1349 112 ENST00000328024.11 ENST00000558714.5 downstream upstream duplicates(5),mismatches(3) TGCGGAGTCGCCGATCCCGCCGGAAGCGCCAGGACAATGGGGACCCGGGACGACGAGTACGACTACCTATTCAAAG|ATCAGATACCATCAGCATAATGTCATCAATGCAGTGGACCAGTGTGACATGGGGAACATAAAGATGGTCACGATTTTTGCAGACTCCATATGCAAAGTATTATAG___GCCTTTCCATCTATCCGGAGTGACCTACCAGAGACAGGACAGTTTGACCAGCAAGCTTCTGATCACTCTTCAACACCCAGCAAGAAGTCTTATCCTCCATGCAGCCTTCTAAGACCTCTCTAAG MGTRDDEYDYLFK|dqipsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15643 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1528 FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111732287:- chr7:111366166-111846462:- chr7:111372343:- chr7:111543034,chr7:111543039 chr7:111734400,chr7:111734400 NA NA chr7:111183090,chr7:111183095 chr7:111374456,chr7:111374456 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 12 22 10 274 161 ENST00000405709.7 ENST00000437633.6 upstream downstream duplicates(2),mismatches(3) GCGG___...GGAAGTGTTGGGCAGGTGGTGGGAGAGCGTCAGGCTTGAACAACATGATTTTAAAGCACGTGTCTGTCTGTCGTTTTTTACTTTTAGGGTTTTGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAGCGGGAGAAAGG|CTTCACCAGCAAGACACACGACATCAGTATCCCCCTCGCCTGCCGGGCGATCTCCATTGAAG___GGCTCTGTGCAGTCTTTCACCCCCTCTCCAGTGGAGTACCACTCGCCAGGACTCATCTCCAACTCCCCTGTCTTGTCGGGCAGCTACAGCAGTGGGATTTCTTCTCTCAGCCGGTGCAGCACGTCGGAAACCTCAGGCTTTGAAAATCAGGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,FALSE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15644 ZNF77::PCAT19 ENSG00000175691.9::ENSG00000267107.9 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2732 TRUE 1051 ZNF77 ENSG00000175691.9 protein_coding - - chr19:2933218-2944971:- chr19:2944838:- chr19:2933216-2944969:- chr19:2944836:- PCAT19 ENSG00000267107.9 lncRNA - - chr19:41449520-41501255:- chr19:41456487:- chr19:41955425-42007165:- chr19:41962392:- chr19:2941863,chr19:2942099 chr19:41463577,chr19:41463878 NA NA chr19:2941861,chr19:2942097 chr19:41969483,chr19:41969784 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 4 30 6 32 68 ENST00000314531.5 ENST00000652406.1 upstream downstream duplicates(1),low_entropy(2) CCGAGCGGCTCAGGTGTCCTGTCGTGCTCACCTGCGCCGGTCGCTGGACCGCGGGGCGCTAACCCTGGAGAGCCCAGGAGCGGGCGGGACATG|GAACCATTGGAGATACTCATTACTCTTTGAAGGCTTACAGTGGAATGAATTCAAATACGACTTATTTGAGGAATTGAAGTTGACTTTATGGAGCTGATAAGAATCTTCTTGGAGAAAAAAAGACTGG___ATCTTTCATTGTAGTACTTCTGAATTAACCAAAATCACAGTATTCTGAAGATGATTCTACAAAGCCTGCTGTTTCTACAAAGG M|epleilitl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15645 ZNF77::PCAT19 ENSG00000175691.9::ENSG00000267107.9 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2732 TRUE 1051 ZNF77 ENSG00000175691.9 protein_coding - - chr19:2933218-2944971:- chr19:2944838:- chr19:2933216-2944969:- chr19:2944836:- PCAT19 ENSG00000267107.9 lncRNA - - chr19:41449520-41501255:- chr19:41456923:- chr19:41955425-42007165:- chr19:41962828:- chr19:2941863,chr19:2942099 chr19:41463577,chr19:41463878 NA NA chr19:2941861,chr19:2942097 chr19:41969483,chr19:41969784 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 8 7 32 22 ENST00000314531.5 ENST00000652160.1 upstream downstream duplicates(1) CCCCGCCTACCCCGAGCGGCTCAGGTGTCCTGTCGTGCTCACCTGCGCCGGTCGCTGGACCGCGGGGCGCTAACCCTGGAGAGCCCAGGAGCGGGCGGGACATG|CCTAGCTAGATGCCTGGAATTTCCCTTGAAGGAAGTCAAGATTTTCCTTTATCTCCATACTGGCTGATGGTGATCGAGTAAGCCCCTAAGAGGGGTCCCTGCTCCATCTCGAGATGCTGCTAGATTCTACAGTGCCTAATAAACAGCTCTCGCCTGGCCGACAAAGAGCTGCTTGCTCTCTGGATAGCAATTCCAAAGTGAACAGACAACATCCTGTTTGGAAGACTGCCACTCTGTTAGAAGAAGCATCAG M|ps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15646 ZNF77::PCAT19 ENSG00000175691.9::ENSG00000267107.9 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2732 TRUE 1051 ZNF77 ENSG00000175691.9 protein_coding - - chr19:2933218-2944971:- chr19:2944838:- chr19:2933216-2944969:- chr19:2944836:- PCAT19 ENSG00000267107.9 lncRNA - - chr19:41449520-41501255:- chr19:41457251:- chr19:41955425-42007165:- chr19:41963156:- chr19:2941863,chr19:2942099 chr19:41463577,chr19:41463878 NA NA chr19:2941861,chr19:2942097 chr19:41969483,chr19:41969784 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 0 7 32 8 ENST00000314531.5 ENST00000651789.1 upstream downstream none CGCGCTTCCCCGCCTACCCCGAGCGGCTCAGGTGTCCTGTCGTGCTCACCTGCGCCGGTCGCTGGACCGCGGGGCGCTAACCCTGGAGAGCCCAGGAGCGGGCGGGACATG|ACGTCTCACTCTTGTCGCCCAGGCTGGAGTGTAATGGCATGATCTCGCCTCACTGCAAC M|tshscrpgwsvma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15648 RPAP2::MTF2 ENSG00000122484.9::ENSG00000143033.18 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1529 FALSE NA FALSE NA RPAP2 ENSG00000122484.9 protein_coding + + chr1:92299059-92402056:+ chr1:92336427:+ chr1:92764616-92867613:+ chr1:92801984:+ MTF2 ENSG00000143033.18 protein_coding + + chr1:93079235-93139079:+ chr1:93110230:+ chr1:93544792-93604636:+ chr1:93575787:+ chr1:92342223,chr1:92342218 chr1:93087255,chr1:93087246 NA NA chr1:92807780,chr1:92807775 chr1:93552812,chr1:93552803 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Rtr1/RPAP2_family(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),Polycomb-like_MTF2_factor_2(100%) RPAP2_Rtr1(100%)|Mtf2_C(100%),PHD(100%),Tudor_2(100%) 6 13 8 76 107 ENST00000610020.2 ENST00000370298.9 downstream upstream mismatches(1) TCCCAGAACCAGATTAGAAAACGCATCGTACTTGAAAAGTTGAGTAAAGT___GTTGCCTGGGCTTCTGGTTCCTCTTCAGATTACATTGGGAGATATTTACACACAACTTAAAAATCTTGTTCGAACTTTCAG|AGACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGCACTATCAAAAAG SQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFr|DSTGAGNSLVHKRSPLRRNQKTPTSLTKLSLQDGHKAKKPACKFEEGQDVLARWSDGLFYLGTIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15649 PEX11G::NRL ENSG00000104883.8::ENSG00000129535.13 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2733 TRUE 1052 PEX11G ENSG00000104883.8 protein_coding - - chr19:7476875-7497449:- chr19:7488951:- chr19:7541761-7562335:- chr19:7553837:- NRL ENSG00000129535.13 protein_coding - - chr14:24078662-24115010:- chr14:24084745:- chr14:24547871-24584219:- chr14:24553954:- chr19:7487393,chr19:7487396 chr14:24084981,chr14:24084981 NA NA chr19:7552279,chr19:7552282 chr14:24554190,chr14:24554190 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Peroxisomal_biogenesis_factor_11_(PEX11)(6%)|Maf_N-terminal_region(100%),bZIP_Maf_transcription_factor(100%) PEX11(0%)|Maf_N(100%),bZIP_Maf(100%) 1 15 0 18 25 ENST00000221480.6 ENST00000558280.1 upstream downstream none CACGGAGTTGCCATGGCGTCGCTGAGCGGCCTGGCGTCGGCGCTGGAGTCGTACAGGGGCCGGGACCGCCTG|GCCAATAAGATATGCAAATGATCTCCTTACCTTATTGGTTGGAGGCCTCAGGACCACAGATGACCTCAGAGAGCTGGCCCTTTAAGAATGCCCTTTGGGCTCTGTGCCCACAGCCCCCTGGAGCTGAGCAGAGGCACCAGGCCCTGCTCCATGGAGCCTTCAGTCTCCTGGGAAGCTGT MASLSGLASALESYRGRDRL|ankick* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15650 PEX11G::NRL ENSG00000104883.8::ENSG00000129535.13 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2733 TRUE 1052 PEX11G ENSG00000104883.8 protein_coding - - chr19:7476875-7497449:- chr19:7489348:- chr19:7541761-7562335:- chr19:7554234:- NRL ENSG00000129535.13 protein_coding - - chr14:24078662-24115010:- chr14:24084745:- chr14:24547871-24584219:- chr14:24553954:- chr19:7487393,chr19:7487396 chr14:24084981,chr14:24084981 NA NA chr19:7552279,chr19:7552282 chr14:24554190,chr14:24554190 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |Maf_N-terminal_region(100%),bZIP_Maf_transcription_factor(100%) |Maf_N(100%),bZIP_Maf(100%) 1 1 0 8 25 ENST00000593942.5 ENST00000558280.1 upstream downstream mismatches(1) GTCATTCCTGCTCACTACGGGCAGGCAGACAGTGCAGAAAAGGTGAAGCACAAAAACTAAAAAGGAAAATCTCTCCTTGAACCACTGCGAACAG|GCCAATAAGATATGCAAATGATCTCCTTACCTTATTGGTTGGAGGCCTCAGGACCACAGATGACCTCAGAGAGCTGGCCCTTTAAGAATGCCCTTTGGGCTCTGTGCCCACAGCCCCCTGGAGCTGAGCAcAG...GTGCCTGTCTGGCTCTGGCACTGACCACATCCTCTCGGCCATTTCTGAA___GTGCACTCCTCCCAGCCCAGCTCCAGAATGGCCCTGCCCCCCAGCCCCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15651 PEX11G::NRL ENSG00000104883.8::ENSG00000129535.13 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2733 TRUE 1052 PEX11G ENSG00000104883.8 protein_coding - - chr19:7476875-7497449:- chr19:7488951:- chr19:7541761-7562335:- chr19:7553837:- NRL ENSG00000129535.13 protein_coding - - chr14:24078662-24115010:- chr14:24082875:- chr14:24547871-24584219:- chr14:24552084:- chr19:7487393,chr19:7487396 chr14:24084981,chr14:24084981 NA NA chr19:7552279,chr19:7552282 chr14:24554190,chr14:24554190 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site translocation low none Peroxisomal_biogenesis_factor_11_(PEX11)(6%)|Maf_N-terminal_region(100%),bZIP_Maf_transcription_factor(100%) PEX11(0%)|Maf_N(100%),bZIP_Maf(100%) 0 1 0 18 21 ENST00000221480.6 ENST00000561028.6 upstream downstream none GGAGTCGTACAGGGGCCGGGACCGCCTG|GTGCACTCCTCCCAGCCCAGCTCCAGAATGGCCCTGCCCCCCAGCCCCCTGGCCATGGAATATGTCAATGACTTTGACTTGATGAAGTTTGAGGTAAAGCGGG ESYRGRDRL|vhssqpssrMALPPSPLAMEYVNDFDLMKFEVKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15654 CLPX::CCDC171 ENSG00000166855.9::ENSG00000164989.17 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1530 TRUE 2735 TRUE 1053 CLPX ENSG00000166855.9 protein_coding - - chr15:65148219-65185342:- chr15:65185075:- chr15:65440557-65477680:- chr15:65477413:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15777600:+ chr9:15553041-16061661:+ chr9:15777598:+ chr15:65182616,chr15:65182619 chr9:15755570,chr9:15755567 NA NA chr15:65474954,chr15:65474957 chr9:15755568,chr9:15755565 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 4 3 4 97 24 ENST00000300107.7 ENST00000380701.8 upstream upstream duplicates(1),mismatches(1) TAGACGGCTGTGGGGCAGAGAAGCGTGAAGGCCTGGCTGCCGGGCAGGTGAACTCTCCACGGGGTCTAGGGCCCGCGAAAGGGTTCGGAACCGAGTCAGCGCGCCTTGCGGGCAGGATTCACGCCGCTGTGACCCGGAGGTCCTCAGGGGGCGAAGCCCCGGCCTAGGCCTCGCGGAGATGCCCAGCTGCGGTGCTTGTACTTGCGGCGCGGCGGCCGTCCGGCTCATCACCTCCTCACTCGCCTCCGCGCAGAGAG|ATCCAAATTCCAGAATTTGTGGACATTTACTCATAGGTGCAGCCAAGAATTCTTTTGCAAAACTCATGGATAAAATTAGTCTGGTAATGGAATGTATACCTCTGCACAGTAGCAGGAGTATTACATATGTAGAAAAAGATTCCCTGGTTCAGAGGCTGGCCCATGGACTTCATAAAGTAAAC...GCATCGTTGCAGAAGCAAATACTTGGATTTACACAAAGACTGCATGCTGCAGAAGTGGAGCGCCGCTCACTACGCTTAGAGGTCACAGAATTCAAACGAAG...GGACAAGAGAGGCTAAAATTACCTGAGTTTTTAG___AAATTGATCACCCATGAGAAGTTTGAAAGTGCATGTGAAGAACTAAATAATGCATTACTTCGGGAAG...ACAGGAATTGAATTATAgACTTGAATTGCACTCCAGTGAGGAAGCTGACAAAAACCAAACTCTTGGAGAAGCTGTTAAG___AGTCTCTCCGAGGCAAAGATGG MPSCGACTCGAAAVRLITSSLASAQR|dPNSRICGHLLIGAAKNSFAKLMDKISLVMECIPLHSSRSITYVEKDSLVQRLAHGLHKV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15655 CLPX::CCDC171 ENSG00000166855.9::ENSG00000164989.17 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2735 TRUE 1053 CLPX ENSG00000166855.9 protein_coding - - chr15:65148219-65185342:- chr15:65185075:- chr15:65440557-65477680:- chr15:65477413:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15778968:+ chr9:15553041-16061661:+ chr9:15778966:+ chr15:65182616,chr15:65182619 chr9:15755570,chr9:15755567 NA NA chr15:65474954,chr15:65474957 chr9:15755568,chr9:15755565 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 1 0 1 97 24 ENST00000300107.7 ENST00000380701.8 upstream upstream none GGCAGAGAAGCGTGAAGGCCTGGCTGCCGGGCAGGTGAACTCTCCACGGGGTCTAGGGCCCGCGAAAGGGTTCGGAACCGAGTCAGCGCGCCTTGCGGGCAGGATTCACGCC...CATCACCTCCTCACTCGCCTCCGCGCAGAGAG|AAAAGCACAGCATCGTTGCAGAAGCAAATACTTGGATTTACACAAAGACTGCATGCTGCAGAAGTGGAGCGCCGCTCACTACGCTTAGAGGTCACAGAATTCAAACGAAGTGTGAATGAAATGAAAAAGGAGCTTGACAAAGCC ITSSLASAQR|ekhsivaeantwiytktaccrsgaplttlrghriqtkce* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15663 TRAP1::CREBBP ENSG00000126602.11::ENSG00000005339.15 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2738 TRUE 1054 TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3710385:- chr16:3701640-3767554:- chr16:3760386:- CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3749683:- chr16:3775055-3930714:- chr16:3799684:- chr16:3704759,chr16:3704870 chr16:3750970,chr16:3751002 NA NA chr16:3754760,chr16:3754871 chr16:3800971,chr16:3801003 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site duplication high none |Creb_binding(100%),Histone_acetylation_protein(100%),TAZ_zinc_finger(48%),Zinc_finger__ZZ_type(100%) |Creb_binding(100%),HAT_KAT11(100%),ZZ(100%),zf-TAZ(12%) 3 1 3 16 69 ENST00000571804.5 ENST00000262367.10 upstream downstream mismatches(1) GCGCGAGCTGCGGGCGCTGCTGCTGTGGGGCCGCCGCCTGCGGCCTTTGCTGCGGGCGCCGGCGCTGGCGGCCGTGCCGGGAG___GCTCCCGTAGGGCCATTGAAATGTGAAGAATCCTTCGTCTATGAAGTGTCCCCACATCAAAACTGCATT|GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC___TTTCGTTGATTGCAAGGAGTGTGGCCGGAAG...AACtACTGCAGGAGTGGTACAAAAAGATGCTGGACAAGGCGTTTGCAGAGCGGATCATCCATGACTACAAG___GATATTTTCAAACAAGCAACTGAAGACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Prostate no_match TRUE Lung squamous cell carcinoma LUNG no_match 3740828 FALSE 3799684 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other 15664 TRAP1::CREBBP ENSG00000126602.11::ENSG00000005339.15 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2738 TRUE 1054 TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3717421:- chr16:3701640-3767554:- chr16:3767422:- CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3749683:- chr16:3775055-3930714:- chr16:3799684:- chr16:3704759,chr16:3704870 chr16:3750970,chr16:3751002 NA NA chr16:3754760,chr16:3754871 chr16:3800971,chr16:3801003 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Creb_binding(100%),Histone_acetylation_protein(100%),TAZ_zinc_finger(48%),Zinc_finger__ZZ_type(100%) |Creb_binding(100%),HAT_KAT11(100%),ZZ(100%),zf-TAZ(12%) 1 3 1 292 69 ENST00000246957.10 ENST00000262367.10 upstream downstream mismatches(1) GCGCGCGGCGCTCTGGGAGTACGACATGGCGCGCGAGCTGCGGGCGCTGCTGCTGTGGGGCCGCCGCCTGCGGCCTTTGCTGCGGGCGCCGGCGCTGGCGGCCGTGCCGGGAG|GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC___TTTCGTTGATTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTGCACTATGACATCATTTGGCCTTCAGG___TTTTGTGTGCGACAACTGCTTGAAGAAAACTGGCAGACCTCGAAAAGAAAACAAATTCAGTGCTAAGA___GGCTG MARELRALLLWGRRLRPLLRAPALAAVPG|gqfqrislkrrkmip* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Prostate no_match TRUE Lung squamous cell carcinoma LUNG no_match 3740828 FALSE 3799684 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other 15665 CNTN5::CDH12 ENSG00000149972.12::ENSG00000154162.15 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNTN5 ENSG00000149972.12 protein_coding + + chr11:99020949-100358885:+ chr11:99021270:+ chr11:98891679-100229616:+ chr11:98892000:+ CDH12 ENSG00000154162.15 protein_coding - - chr5:21750673-22853344:- chr5:22212643:- chr5:21750782-22853453:- chr5:22212752:- chr11:99251541,chr11:99251541 chr5:22356490,chr5:22356489 NA NA chr11:99122272,chr11:99122272 chr5:22356599,chr5:22356598 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(100%) |Cadherin(100%),Cadherin_C(100%) 1 2 2 19 5 ENST00000524871.6 ENST00000382254.6 downstream downstream mismatches(3) CTCGGGGCGGAGAGGATGCGTTACCTGGGTCCCGTCTGCTGCGAGAGGCAGGGCAAGCTGGAGGATTCCCTCTGAATGATTAAGAACTCCGCAATTCGCCTCTGCCACAGGCTGCAAAGGACCCGAGGAACCGCTCTCTCTGAACTGTGCTGATGGGCAGGAGGATGGGAGACAGGAATTGAGAGTCACAGAGGAAGGACAGTGGAGTCTGGCATCTTATTG|ACAGTGAGGAGCTCAACATAACAGGGAAAAGGAGCACAGGATGCAGCTACTTGGAGGGTGTTGATTGAAAACTTCGATCTCCCCACCCCATTCACGGTTGATTTGACGGATTTCTCACCTtGTTCACAGAGAAAATTTCAATTAAG___GCCCCTTTAGATGGAATATAATACAGCAGAAGCCTTTTCATCAAAAGGATTAATGCCTGCATCATCATTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15666 DENND4A::ENSG00000249240 ENSG00000174485.16::ENSG00000249240.2 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2739 TRUE 1055 DENND4A ENSG00000174485.16 protein_coding - - chr15:65658046-65792293:- chr15:65792010:- chr15:65950384-66084631:- chr15:66084348:- ENSG00000249240 ENSG00000249240.2 protein_coding + + chr15:64841883-64930920:+ chr15:64921921:+ chr15:65134082-65223118:+ chr15:65214120:+ chr15:65785580 chr15:64894534 NA NA chr15:66077918 chr15:65186733 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none none |Ank(19%),Ank_2(13%),Ank_3(100%),Ank_4(68%),Ank_5(68%) 3 1 1 27 14 ENST00000443035.8 ENST00000437723.1 upstream upstream mismatches(1) CCGCGAAGGGCGGAGCGCCGGGCTGGGGATGAGCTAAGCGGGCTCAGAGCGCCGCGGCATTCAGCCCCTCGTGTcCCGCTACCGCGCGTGaGGGATTCCGGCGCCGCTCTCCGAGCTCGATCCGCTGCTCGCACGGGAGCCAGCTGGGTG|TTTGGGATGAATGCGCTTCTCCTGTCTGCCTGGTTCGGCCACTTACGAATCC...CAGATCTTGGTAAACTCAGGGGCCAAGATCCACTGTGAGAGCAAG___GATGGCCTGACCTTACTGCACTGCGCAGCCCAAAAAGGCCATGTGCCTGTGCTGGC...GGGCTGGACCTGGAGGAGgAGAATGCG___GAAGGTCTGACTGCCCTGCATTCGGCTGCTGGAGGATCCCACCCTGACTGTGTGCAGCTCCTCCTCAGGGCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15667 DENND4A::ENSG00000249240 ENSG00000174485.16::ENSG00000249240.2 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2739 TRUE 1055 DENND4A ENSG00000174485.16 protein_coding - - chr15:65658046-65792293:- chr15:65792010:- chr15:65950384-66084631:- chr15:66084348:- ENSG00000249240 ENSG00000249240.2 protein_coding + + chr15:64841883-64930920:+ chr15:64930822:+ chr15:65134082-65223118:+ chr15:65223020:+ chr15:65785580 chr15:64894534 NA NA chr15:66077918 chr15:65186733 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none none |Ank(19%),Ank_2(1%),Ank_3(76%),Ank_4(5%),Ank_5(4%) 0 1 0 27 35 ENST00000443035.8 ENST00000437723.1 upstream upstream none CGGCGCCGCTCTCCGAGCTCGATCCGCTGCTCGCACGGGAGCCAGCTGGGTG|GAGGGGAACACTGCCCTTCATCTGGCTGCTGGTCGGGGCCATATGGCTGTGCTGCAGCGACTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15668 RPS6KA2::PDE10A ENSG00000071242.12::ENSG00000112541.19 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPS6KA2 ENSG00000071242.12 protein_coding - - chr6:166409364-166906451:- chr6:166531232:- chr6:166822852-167319939:- chr6:166944720:- PDE10A ENSG00000112541.19 protein_coding - + chr6:165327287-165988117:- chr6:165791329:+ chr6:165740776-166401605:- chr6:166204817:+ chr6:166520129 chr6:165725357 NA NA chr6:166933617 chr6:166138845 NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' high none Protein_kinase_domain(7%)| PK_Tyr_Ser-Thr(9%),Pkinase(7%),RAM(100%)| 0 2 3 64 3 ENST00000510118.5 unknown upstream upstream none AGGGCTTTGAGAAGGCAGATCCTTCCCAGTTTGAGCTGCTGAAGGTTTTAGGACAAGGATCCTATGGAAAG___GTGTTCCTGGTGAGGAAGGTGAAGGGGTCCGACGCTGGGCAGCTCTACGCCATGAAGGTCCTTAAGAAAGCCACCCTAAAAG|GTTCACCTATGCTGCCACATATTGCAGAATGTCCTTCTTCTTAAGGCTGAACCACAGTCCTTGGCATGTAAATATGCCACAATTTCTTTATCTACCTGTTGATGGACATTTGGGTTGTCTCTGCATCTTGGCTATTGTGAACGGCGCTGCCACGGTCCTCTGACTTATTTTAATGTTTATCTTCCATGGTAAATGCCCCTGTGTTTTCCAAC GFEKADPSQFELLKVLGQGSYGKVFLVRKVKGSDAGQLYAMKVLKKATLK|gspmlphiaecpss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-2 AGC RSK RSKp90 Q15349 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15669 MLLT3::LINC01242 ENSG00000171843.17::ENSG00000280683.1 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20620654:- chr9:20341667-20622498:- chr9:20620653:- LINC01242 ENSG00000280683.1 lncRNA - + chr9:30388935-30575012:- chr9:30454720:+ chr9:30388933-30575010:- chr9:30454718:+ chr9:20458109,chr9:20458116,chr9:20458113 chr9:30435367,chr9:30435360,chr9:30435363 NA NA chr9:20458107,chr9:20458114,chr9:20458111 chr9:30435365,chr9:30435358,chr9:30435361 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none YEATS_family(45%)| YEATS(0%)| 0 2 2 18 11 ENST00000380338.9 unknown upstream upstream multimappers(4) GGGTACCACACAACACCCCAGCAAACCTCCGGGCCCCCAGGCATGGCTAGCTCG___TGTGCCGTGCAGGTGAAGCTGGAGCTGGGGCACCGCGCCCAGGgGAG...TGGTGTTCGTACGCGGTCCGGAGCACAGTAACATACAGCACTTTGTGGAGAAAGTCGTCTTCCACTTGCACGAAAGCTTTCCTAGGCCAAAAAGAG|TGAGCTTAGAAGAAGACCTACACACCTCAGATGTTGATTACAGCCTTTGAGACATTGATCACAGACCTGGTTAGTCTCCTGACCCATGGAAATGTGAG___GGACATGGATGAAATTGGAA VFVRGPEHSNIQHFVEKVVFHLHESFPRPKR|vsleedlhtsdvdysl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 15677 DPYD::DPYD-AS1 ENSG00000188641.14::ENSG00000232878.3 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2741 TRUE 1056 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97883264:- chr1:97543299-98460556:- chr1:98348820:- DPYD-AS1 ENSG00000232878.3 lncRNA + + chr1:97095923-97322955:+ chr1:97295456:+ chr1:97561479-97788511:+ chr1:97761012:+ chr1:97881601,chr1:97881603 chr1:97270501,chr1:97270499 NA NA chr1:98347157,chr1:98347159 chr1:97736057,chr1:97736055 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 10 5 10 285 14 ENST00000370192.8 ENST00000630798.1 upstream upstream mismatches(5) GACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG___AGTATCCTGGCTTTAAATCCTCGAACACAAACTCATGCAACTCTGTGTTCCACTTCGGCCAAGAAATTAGACAAGAAACATTGGAAAAGAAATCCTGATAAGAACTGCTTT|GGTCTCACTCTTTTGCCCAGGCTGGAGTGCATGGGCGCAATCTTGGCTCACTGCAGCATCGACCTCCCAGACTGAATCGCTCCTCCCACCTCAGCCTCAGGAGTAGCcGGGACTACAGGCGCATGTCACCATGCCAGGCTAAGTTTTGTGTTTTTGGTAGAGACAGGGTTTCACCATGTTGCTCAGGCTAGTCTCAAACTCCTGGGCTCAAGCAATCTGCCCGCCGCAGCTTCCCGAAGTGCTGGGATTCCATGgGTGAGgCgTCGCTCTCgGCCTGATAATTTTCTTAAAAcTGCCcGTGCT MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCF|gltllprlecmgailahcsidlpd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15678 DPYD::DPYD-AS1 ENSG00000188641.14::ENSG00000232878.3 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2741 TRUE 1056 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97883264:- chr1:97543299-98460556:- chr1:98348820:- DPYD-AS1 ENSG00000232878.3 lncRNA + + chr1:97095923-97322955:+ chr1:97306189:+ chr1:97561479-97788511:+ chr1:97771745:+ chr1:97881601,chr1:97881603 chr1:97270501,chr1:97270499 NA NA chr1:98347157,chr1:98347159 chr1:97736057,chr1:97736055 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 4 1 285 159 ENST00000370192.8 ENST00000422980.1 upstream upstream none CCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG___AGTATCCTGGCTTTAAATCCTCGAACACAAACTCATGCAACTCTGTGTTCCACTTCGGCCAAGAAATTAGACAAGAAACATTGGAAAAGAAATCCTGATAAGAACTGCTTT|CTCTTGCGATGCTCACAATATCAGTGACATTTGGGGTCAGCTTGGCAAAAAAAGGAATCTGAACAGCTTGCCTAACCCAGCGGCAGATGTTCC...CGGTTAAATATAGAACAAAATTAAAGAATTGTGATCAAAATGTGTACTGGAACAACAGCAAAGCTGGAGACGTGCAAGACAAATCCAACTTGACAATGAGCTACATGATATATTTCTCAAATTCCTCCTCAGTATTACACCTAGACTCATTAGGGAACTAAGGTTAACACACT...CAGGACCCAGAGCCAGGCAGTGTGACTGAGCAAGAGTCTGTGCTTTTAACGACTAGGTTTTGCTAGCCCAAAGCACATACTTGATACACGTAAGTAATTAT PVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCF|llrcsqyq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15679 DPYD::DPYD-AS1 ENSG00000188641.14::ENSG00000232878.3 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2741 TRUE 1056 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97883264:- chr1:97543299-98460556:- chr1:98348820:- DPYD-AS1 ENSG00000232878.3 lncRNA + + chr1:97095923-97322955:+ chr1:97279955:+ chr1:97561479-97788511:+ chr1:97745511:+ chr1:97881601,chr1:97881603 chr1:97270501,chr1:97270499 NA NA chr1:98347157,chr1:98347159 chr1:97736057,chr1:97736055 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 0 1 0 285 2 ENST00000370192.8 ENST00000629811.2 upstream upstream none AAAAGAAATCCTGATAAGAACTGCTTT|AAAGGCACATTGCTTTCATGACGGAGATCTGAGGATCCTTCTAAGAAATTGTTTATCCCCAGAGAAAAGACCTGAAGATACTCACATTTGTCAGCCACAGTAAAAGGAAG KRNPDKNCF|kgtlls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15680 DPYD::DPYD-AS1 ENSG00000188641.14::ENSG00000232878.3 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 2741 TRUE 1056 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97883264:- chr1:97543299-98460556:- chr1:98348820:- DPYD-AS1 ENSG00000232878.3 lncRNA + + chr1:97095923-97322955:+ chr1:97308390:+ chr1:97561479-97788511:+ chr1:97773946:+ chr1:97881601,chr1:97881603 chr1:97270501,chr1:97270499 NA NA chr1:98347157,chr1:98347159 chr1:97736057,chr1:97736055 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 1 0 0 285 21 ENST00000370192.8 ENST00000422980.1 upstream upstream none GCAGACTtGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG___AGTATCCTGGCTTTAAATCCTCGAACACAAACTCAT...GTTCCACTTCGGCCAAGAAATTAGACAAGAAACATTGGAAAAGAAATCCTGATAAGAACTGCTTT|GCAAGCCAGCTGCTGACTAATCATCACAGCCAAGGG STSAKKLDKKHWKRNPDKNCF|asqlltnhhsq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15683 PIK3C2B::SOX13 ENSG00000133056.14::ENSG00000143842.15 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3C2B ENSG00000133056.14 protein_coding - - chr1:204422628-204494805:- chr1:204464012:- chr1:204391756-204463933:- chr1:204433140:- SOX13 ENSG00000143842.15 protein_coding + - chr1:204073115-204127743:+ chr1:204081273:- chr1:204042243-204096871:+ chr1:204050401:- chr1:204461485,chr1:204461465,chr1:204461474,chr1:204461460,chr1:204461551,chr1:204461478,chr1:204461476,chr1:204461461 chr1:204088665,chr1:204088665,chr1:204088665,chr1:204088665,chr1:204088665,chr1:204088665,chr1:204088665,chr1:204088665 NA NA chr1:204430613,chr1:204430593,chr1:204430602,chr1:204430588,chr1:204430679,chr1:204430606,chr1:204430604,chr1:204430589 chr1:204057793,chr1:204057793,chr1:204057793,chr1:204057793,chr1:204057793,chr1:204057793,chr1:204057793,chr1:204057793 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none PI3-kinase_family__ras-binding_domain(71%)| PI3K_rbd(13%)| 8 1 2 56 15 ENST00000684373.1 unknown upstream downstream duplicates(1),mismappers(2) GGGGCTGGAAGGAGGGCCGAGGGCCGCTGGACTTCAGCAAAGACACCTCTGGAAAACCCGTGGCCAGGAGCAAGACTATGCCCCCTCAGGTGCCCCCCCGC...CCCCG___GTGGGCTCCCGGCCCCACACTGTTGCCAATGGCCATGAGTTGTTTGAGGTCTCAGAAGAGAGAGATGAGGAGGTTGCTGCATTTTGCCACATGCTG...TCCAAGACTACTTCCTCACTGGCTATGTCTGGAGTGCTGTCACCCCTAGCCCAGAGCACCTCGGGGATGAGGTCAACCTGAAGGTGACTGTGTTGTGTGACAGGCTTCAAGAGGCACTCACTTTCACCTGCAACT___GTTCCTCCACTGTAGACTTGCTTATCTACCAGACCCTGTGCTACACCCATGATGACCTGAGGAATGTGGACGTGGGTGACTTTGTGCTAAAGCCCTGCGGGCTGGAGGAGTTCCTGCAGAA|AGACTACAGAAATAAGAAAACGAATATGAGCCACGATCTTTAAAAAAAAGAAAGAAGTCATGGCTGGGAGTGGTGGCTCATGCCTGTAATCCCAGCACTTtGGGAGGCCAAAGCAGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTAACCAACATGGAGAAATCC QDYFLTGYVWSAVTPSPEHLGDEVNLKVTVLCDRLQEALTFTCNCSSTVDLLIYQTLCYTHDDLRNVDVGDFVLKPCGLEEFLQk|dyrnkktnmshdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15684 TMEM237::RABGAP1 ENSG00000155755.20::ENSG00000011454.18 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMEM237 ENSG00000155755.20 protein_coding - - chr2:201620184-201643570:- chr2:201624291:- chr2:202484907-202508293:- chr2:202489014:- RABGAP1 ENSG00000011454.18 protein_coding + - chr9:122940833-123104866:+ chr9:123020460:- chr9:125703112-125867145:+ chr9:125782739:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS intron translocation/5'-5' medium none Transmembrane_protein_237(100%)| TMEM237(100%)| 1 1 5 479 146 ENST00000409883.7 unknown upstream downstream none CTCCAGCCATGGATTGTGGTGAATCTCGTGGTGGCTCTTCTGGTTGGATTATCTTGGCTATTTTTGTCTTATAGGCCAGGCATGGATCTTAGTGAAG___AGTTAATGTTCTCCTCAGAGGTGGAAGAATAT|CCcTTGTGATAAGAATGCGGTATTTCTCTACCAGGTGGTCATTGTTATGACAGCCTGCTAGCAGCTGCCAGACTTCTCCTCGAAGAGCTTCAGGGACACCGTTTCTTACTAAGGATGACAACTGCTTCGGTCTCACATTCAAGTTGAGATGCC LQPWIVVNLVVALLVGLSWLFLSYRPGMDLSEELMFSSEVEEY|pl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15702 CCDC18-AS1::CCDC18 ENSG00000223745.8::ENSG00000122483.18 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC18-AS1 ENSG00000223745.8 lncRNA - - chr1:93262186-93346025:- chr1:93305388:- chr1:93727743-93811582:- chr1:93770945:- CCDC18 ENSG00000122483.18 protein_coding + - chr1:93179919-93278730:+ chr1:93250373:- chr1:93645476-93744287:+ chr1:93715930:- chr1:93273164,chr1:93273226,chr1:93273120,chr1:93274315 chr1:93273493,chr1:93273314,chr1:93273286,chr1:93274396 NA NA chr1:93738721,chr1:93738783,chr1:93738677,chr1:93739872 chr1:93739050,chr1:93738871,chr1:93738843,chr1:93739953 NA NA sense antisense unknown exon/splice-site intron deletion/read-through/5'-5' low none none none 0 0 3 98 6 ENST00000668257.1 unknown upstream downstream mismappers(2),mismatches(1) GGTTCATGCCTGTAATCCCAGCACTTTGAGAGGCCGAG___GCACCATGCTGGGAGATAAGGATCCAACATAA-----ACAGTGCTGATGCTTTTGGAAAGCTCATATTCAAGCTGGGGAGACAAACAACATACAA___GAGGGC...AGTCTACGTTCATTCAGGGCCTGCTGTGGAAGACCAGCCCCAAAG|GGTCTCACTCTGATGCCCAGGCTGGAGTGCAGTGGCACAATCATAGCTCACTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15707 MAP4::PRPF3 ENSG00000047849.22::ENSG00000117360.13 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47977865:- chr3:47892180-48130762:- chr3:48019355:- PRPF3 ENSG00000117360.13 protein_coding + + chr1:150321479-150353233:+ chr1:150349157:+ chr1:150293928-150325709:+ chr1:150321633:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Protein_of_unknown_function_(DUF1115)(45%) |DUF1115(45%) 1 0 1 572 497 ENST00000395734.8 ENST00000324862.7 upstream upstream none ATATTCCTCTCCTGGATGTTGATGAGAAAACCGGGAACTCAGAGTCAAAGAAGAAACCGTGCTCAGAAACTAGCCAGATTGAAG___ATACTCCATCTTCTAAACCAACACTCCTAGCCAATGGTGGTCATGGAGTAGAAGGGAGCGATACTACAG|ATGATGAGGAGTCTGATGAGGAAGCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAG___GGTACAGCCAAAGACCGGAGCTTTGGAGcGAT IPLLDVDEKTGNSESKKKPCSETSQIEDTPSSKPTLLANGGHGVEGSDTT|dDEESDEEAVKKTNKCVLVWEGTAKDRSFGa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15711 PHACTR4::PLB1 ENSG00000204138.13::ENSG00000163803.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHACTR4 ENSG00000204138.13 protein_coding + + chr1:28369582-28500364:+ chr1:28407463:+ chr1:28696093-28826876:+ chr1:28733974:+ PLB1 ENSG00000163803.13 protein_coding + - chr2:28457145-28644142:+ chr2:28481928:- chr2:28680012-28867008:+ chr2:28704795:- chr1:28443602,chr1:28443601 chr2:28502956,chr2:28502957 NA NA chr1:28770113,chr1:28770112 chr2:28725823,chr2:28725824 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 83 289 297 1352 1159 ENST00000373839.8 unknown downstream downstream duplicates(56),low_entropy(1),mismappers(6),mismatches(59),multimappers(5) CCAACGGGCCAGGTAGGATTTCCGGGAGAGGCTGCTGTGGAGGCTGAGGAGGCGGCGGCGGAGATCTGG___AAACAGTATCTCACCTCCCTAAACTGGTTAATAGTGGCATGGAAGATCCATTTG|GATATGGCtCTGTTGCCTAGGCTGAAGTGCAGTGGTGCAATCACTGCTCACTACAGCCTTGACTTCTCAGGCTCAAACGATCCTCCTACCTCAACCACCCAAGTAGCTGGGACTACAAGCACACACCACGGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCAtGTATACATCCAGATGGCCTGAAGCATCTGAAGATCCACAAAAGAAGTGAAAATAGCC MEDPF|gygsva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15730 COP1::LINC01035 ENSG00000143207.21::ENSG00000226486.2 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA COP1 ENSG00000143207.21 protein_coding - - chr1:175944831-176207286:- chr1:176175910:- chr1:175913967-176176422:- chr1:176145046:- LINC01035 ENSG00000226486.2 lncRNA + - chr1:188905688-189037564:+ chr1:188987982:- chr1:188874819-189006695:+ chr1:188957113:- chr1:176173897 chr1:189024669 NA NA chr1:176143033 chr1:188993800 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Zinc_finger__C3HC4_type_(RING_finger)(100%)| zf-C3HC4(71%),zf-C3HC4_2(71%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(71%)| 78 90 75 391 178 ENST00000367669.8 unknown upstream downstream duplicates(10),mismappers(10),mismatches(23) CTCATCAACTCCTACGAGGACAAAAGCAACGACTTCGTATG___CCCCATCTGCTTTGATATGATTGAAGAAGCATACATGACAAAATGTGGCCACAGCTTTTG___CTACAAGTGTATTCATCAGAGTTTGGAGGACAATAATAGATGTCCCAAGTGTAACTATGTTGTGGACAATATTGACCATCTGTATCCTAATTTCTTGG|GTTTCAAGATATAACCTTGAAGCAAACCTCAGAAGCCTTTTTTCTTAGCCTTAAAATAGACTCCATGTCTCTTTATTTCTCACCATATATATTCCCTTCACATTTATCTAACCGCACACTAGTATCTACTTATTTGCCTTTTTAAAAGTTCTAGGGACTAATCTTGAGACAGACAAACCAAGCCTGGAGTCCCAGCTGCAAAATTCCAGAGATCACTTCAAGGTGGCTGATTAACAACCTGGCCATTGGTGAGATTATGCTGGCCCATGA LINSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFL|gfki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15732 PPP4R2::GXYLT2 ENSG00000163605.16::ENSG00000172986.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE TRUE 1532 TRUE 2744 TRUE 1057 PPP4R2 ENSG00000163605.16 protein_coding + + chr3:72996803-73069198:+ chr3:72998158:+ chr3:73045954-73118349:+ chr3:73047309:+ GXYLT2 ENSG00000172986.13 protein_coding + + chr3:72888046-72998138:+ chr3:72974977:+ chr3:72937197-73047289:+ chr3:73024128:+ chr3:73011655,chr3:73011656 chr3:72971097,chr3:72971090 NA NA chr3:73060806,chr3:73060807 chr3:73020248,chr3:73020241 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PPP4R2(10%)| PPP4R2(1%)| 17 47 81 583 222 ENST00000356692.10 ENST00000389617.9 downstream upstream duplicates(10),mismatches(5) AGGGAGGCGGAGGCTGTGAGGGACTCCGGGAAGCCATGGACGTCGAGAGGCTCCAGGAGGCGCTGAAAG___ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT|TTTCCCTTTCAAGACAATCTCTTTCAATCCATGTATTACCCCCTTCAGCTGAAGTTTTTGGAGACTGTGCACACTTTATGTGGACGAATCCCGCAAGTTTTTCTGAAGCAAATTGAGAAAACAATGAAAAGGGCTTATGAGAAACACGTCATCATCCATGTTGGCCCCAACCAGATGCACTGAATATTTT MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETi|fpfktisfnpcitpfs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15733 PPP4R2::GXYLT2 ENSG00000163605.16::ENSG00000172986.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2744 TRUE 1057 PPP4R2 ENSG00000163605.16 protein_coding + + chr3:72996803-73069198:+ chr3:72998158:+ chr3:73045954-73118349:+ chr3:73047309:+ GXYLT2 ENSG00000172986.13 protein_coding + + chr3:72888046-72998138:+ chr3:72998077:+ chr3:72937197-73047289:+ chr3:73047228:+ chr3:73011655,chr3:73011656 chr3:72971097,chr3:72971090 NA NA chr3:73060806,chr3:73060807 chr3:73020248,chr3:73020241 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PPP4R2(10%)| PPP4R2(1%)| 1 0 0 583 648 ENST00000356692.10 ENST00000491839.1 downstream upstream duplicates(14) GGCGGAGGCTGTGAGGGACTCCGGGAAGCCATGGACGTCGAGAGGCTCCAGGAGGCGCTGAAAG___ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT|ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAAT___GATTCAG MDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETi|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15734 PPP4R2::GXYLT2 ENSG00000163605.16::ENSG00000172986.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2744 TRUE 1057 PPP4R2 ENSG00000163605.16 protein_coding + + chr3:72996803-73069198:+ chr3:72998157:+ chr3:73045954-73118349:+ chr3:73047308:+ GXYLT2 ENSG00000172986.13 protein_coding + + chr3:72888046-72998138:+ chr3:72998077:+ chr3:72937197-73047289:+ chr3:73047228:+ chr3:73011655,chr3:73011656 chr3:72971097,chr3:72971090 NA NA chr3:73060806,chr3:73060807 chr3:73020248,chr3:73020241 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PPP4R2(10%)| PPP4R2(1%)| 0 0 0 583 648 ENST00000356692.10 ENST00000491839.1 downstream upstream none GGAGGCGCTGAAAG___ATTTTGAGAAGAGGGGGAAAAAGGAAGTTTGTCCTGTCCTGGATCAGTTTCTTTGTCATGTAGCCAAGACTGGAGAAACAA|t|ATTTTGAGAAGAGGGGGA EALKDFEKRGKKEVCPVLDQFLCHVAKTGET|i|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15736 KDM4C::OSBPL3 ENSG00000107077.19::ENSG00000070882.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:7049200:+ chr9:6720863-7175648:+ chr9:7049200:+ OSBPL3 ENSG00000070882.13 protein_coding - + chr7:24796540-24981634:- chr7:24956060:+ chr7:24836159-25021253:- chr7:24995679:+ chr9:7091420,chr9:7091420,chr9:7091408,chr9:7091410 chr7:24947791,chr7:24947793,chr7:24947772,chr7:24947784 NA NA chr9:7091420,chr9:7091420,chr9:7091408,chr9:7091410 chr7:24987410,chr7:24987412,chr7:24987391,chr7:24987403 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none JmjC_domain__hydroxylase(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(49%),jmjN_domain(100%)| JmjC(100%),JmjN(100%),PHD_2(100%),zf-HC5HC2H(0%),zf-HC5HC2H_2(4%)| 17 20 21 103 40 ENST00000381309.8 unknown downstream upstream duplicates(1),low_entropy(1),mismatches(3) ATGGCTGTGTGCCCGGTGCAAAAGAAATGCGTGGACAGCA___GAATGCTGTCTCTGCAATTTGAGAGGAGGTGCTCTTAAGCAAACGAAGAACAATAA___GTGGGCCCATGTCATGTGCGCCGTTGCGGTCCCAGAAGTTCGATTCACTAATGTCCCAGAAAGGACACAAATAGATGTAGGCAGAATACCTTTACAGAGGTTAAAATTG|GTCCTGGATCAGTCTCCACGGAAAATACTCACTGACTCCTCCCAGGATGAAAGTGACCCACAGTCAACATCTGGATGTGAACGCAGTGCTGATTCCCATCATGCATAAACCCACTTAGCCATGAAAGCTTCAATAAAACTGCTCTGTGACTGAAATACTGCAAAGCCTGCCCCAGGGCAAAGCCTGCCCCTGACTCAGCCTCAAAGGTGCCAACTGGCTCCCAGTTAACCAACCCTTCCC WLCARCKRNAWTAECCLCNLRGGALKQTKNNKWAHVMCAVAVPEVRFTNVPERTQIDVGRIPLQRLKL|vldqsprkiltdssqdesdpqstsgcersadshha* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15737 ACTR1B::C2orf92 ENSG00000115073.8::ENSG00000228486.11 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACTR1B ENSG00000115073.8 protein_coding - - chr2:97655939-97664044:- chr2:97659352:- chr2:98272402-98280507:- chr2:98275815:- C2orf92 ENSG00000228486.11 protein_coding + - chr2:97664217-97703066:+ chr2:97669851:- chr2:98280680-98319529:+ chr2:98286314:- chr2:97659298,chr2:97659300,chr2:97659300 chr2:97670553,chr2:97670492,chr2:97670552 NA NA chr2:98275761,chr2:98275763,chr2:98275763 chr2:98287016,chr2:98286955,chr2:98287015 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Actin(26%)| Actin(64%)| 10 14 24 538 144 ENST00000289228.7 unknown upstream downstream duplicates(2),mismatches(5) ATCGCCAACCAGCCTGTGGTCATCGACAAC___...GTTCGGGGGTGATTAAAGCTGGCTTTGCAGGAGACCAGATTCCCAAATACTGTTTCCCAAACTA___...GGGTGATGGCTGGAGCCCTGGAGGGGGACCTCTTCATCGGACCAAAAGCAGAG___GAGCACCGGGGGCTGCTGACCATCCGCTACCCCATGGAGCACGGCGTGGTGCGAGACTGGAACGACATGGAACGCATCTGGCAGTACGTCTACTCCAAGGATCAGCTGCAGACCTTCTCGGAGGAG|CTGCCACAGCAATATACCTTGGATCCAGCAGAGAACAAAGAAGAGGGCCATGGCTCTGCTCATCTTTGCCTTAGTCCATgAACCATCATGGAGAAGCCAGTCTTCTGATGGCCCTTCAGATTCAGCAGCTGTGGACTCCAGGGTACCACGGAACCTAACGGTCTATGAAGTCATACACGGAAGTGAGGTGGAGCCTGCTCAACCATGAGAAGGGGAAGGGCCTGTGTCTGTGGACAGTGACGGGG VMAGALEGDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEE|lpqqytldpaenkeeghgsahlclsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15738 DLG1::PCYT1A ENSG00000075711.21::ENSG00000161217.12 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE TRUE 1533 FALSE NA FALSE NA DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197282679:- chr3:196769431-197026201:- chr3:197009550:- PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196248323:- chr3:195941093-196014828:- chr3:195975194:- chr3:197218774,chr3:197218909 chr3:196252778,chr3:196253101 NA NA chr3:196945645,chr3:196945780 chr3:195979649,chr3:195979972 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none L27_1(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(0%)|Cytidylyltransferase-like(100%) L27_1(100%),MAGUK_N_PEST(0%)|CTP_transf_like(100%),Solute_trans_a(100%) 14 12 21 239 158 ENST00000663148.1 ENST00000441879.5 upstream downstream duplicates(1),low_entropy(1),mismatches(2) CTCTTTCAGGCTTTAATAG___ATATTCAAGAATTTTATGAAGTGACCTTACTGGATAATCCAAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGAGATTTCCAGCCTTCCAAGCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAG|GTGAGCGACCTGTGAGAGTTTATGCCGATGGAATATTTGACTTATTTCACTCTGGTCACGCCCGAGCTCTGATGCAAGCGAAGAACCTTTTCCCTAATACGTACCTCATTGTGGGAG___TTTGCAGTGATGAGCTCACACACAACTTCAAAGGCTTCACGGTGATGAACGAGAATGAGCGCTATGACGCAGTCCAGCACTGCCGCTACGTGGATGAGGTGGTGAGGAATGCGCCCTGGACG LFQALIDIQEFYEVTLLDNPKCIDRSKPSEPIQPVNTWEISSLPSSTVTSETLPSSLSPSVE|vsdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15739 ANXA9::NUP210L ENSG00000143412.10::ENSG00000143552.10 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE TRUE 1534 FALSE NA FALSE NA ANXA9 ENSG00000143412.10 protein_coding + + chr1:150982249-150995634:+ chr1:150988341:+ chr1:150954725-150968110:+ chr1:150960817:+ NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154012370:- chr1:153965166-154127592:- chr1:153984846:- chr1:150991572,chr1:150991573 chr1:154013007,chr1:154013006 NA NA chr1:150964048,chr1:150964049 chr1:153985483,chr1:153985482 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Annexin(78%)| Annexin(52%)| 10 15 16 194 34 ENST00000368947.9 ENST00000271854.3 downstream downstream duplicates(1),mismatches(5) TCCCAGTCTTCACCCAGCGAAATCCTGAACACCTCATCCGAG___TGTTTGATCAGTACCAGCGGAGCACTGGGCAAGAGCTGGAGGAGGCTGTCCAGAACCGTTTCCATGGAGATGCTCAGGTGGCTCTGCTCGGCCTAG___CTTCGGTGATCAAGAACACACCGCTGTACTTTGCTGACAAACTTCATCAAGCCCTCCAG|GTGGTGGTCAATGCATCATCAAGATTAATGCTCAGTTATGACCTCAAGACTTATCTCACCAATACCCTCAATTCAACTGTATTCAAGCTCTTCATCACCACTGGCAGAAATGGTGTCAATCTTAAAG___GATTCTGTACCCCAAACCAGGCCTTGGCCATTACAAAAGTACTTCTTCCAGCGACCCTCATGCTGTGC PVFTQRNPEHLIRVFDQYQRSTGQELEEAVQNRFHGDAQVALLGLASVIKNTPLYFADKLHQALQ|VVVNASSRLMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLML NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15741 SCUBE3::ENSG00000226281 ENSG00000146197.9::ENSG00000226281.6 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCUBE3 ENSG00000146197.9 protein_coding + + chr6:35213956-35253079:+ chr6:35233301:+ chr6:35181733-35220856:+ chr6:35201078:+ ENSG00000226281 ENSG00000226281.6 lncRNA - + chr6:6692741-6801186:- chr6:6706370:+ chr6:6692974-6801419:- chr6:6706603:+ chr6:35237032,chr6:35237028,chr6:35237030 chr6:6696263,chr6:6696147,chr6:6696258 NA NA chr6:35204809,chr6:35204805,chr6:35204807 chr6:6696496,chr6:6696380,chr6:6696491 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Complement_Clr-like_EGF-like(100%),EGF_domain(100%)| EGF(100%),EGF_3(100%),EGF_CA(92%),cEGF(64%),hEGF(100%)| 5 4 15 41 43 ENST00000274938.8 unknown downstream upstream duplicates(2),mismatches(4) GCAGAGCTGTGTCAACATGATGGGCAGCTATGAGTGCCACTGCCGGGAAGGCTTCTTCCTCAGCGACAACCAGCAcACCTGTATCaAGCGGCCAGAAG___AAGGAATGAATTGCATGAACAAGAACCACGGCTGTGCCCACATTTGCCGGGAGACACCCAAGGGGGGTATTGCCTGTGAATGCCGTCCTGGCTTTGAGCTTACCAAGAACCAACGGGACTGTAAAT___TGACATGCAACTATGGTAACGGCGGCTGCCAGCACACGTGTGATGACACAGAGCAGGGTCCCCGGTGCGGCTGCCATATCAAGTTTGTGCTCCATACCGACGGGAAGACATGCATCG|AGCAGAAGGTCAACTGCCTCAGGTGTGTGCAGTCACTTACTGGCCCTGGAAATGTACATCCAGAACAGAATATTATCTTCCTGGCAGCCGTCCCATTCAGCCTGTGCATGGAGCTGTCCCAAGACCTGAGCCTTCTTAGTTTGGTGATGCTTCACTATGGCTTCAACTCTCCAACTTCTGCCCTCCAAGACCATAGTGATAAGAAAACAAAGATCAACTACCCCCGAGCTGGGAGGAGGACTCCTTTTTTCTCTGTACAGCCTTTTATATGTTTA QSCVNMMGSYECHCREGFFLSDNQHTCIkRPEEGMNCMNKNHGCAHICRETPKGGIACECRPGFELTKNQRDCKLTCNYGNGGCQHTCDDTEQGPRCGCHIKFVLHTDGKTCI|eqkvnclrcvqsltgpgnvhpeqniiflaavpfslcmelsqdlsllslvmlhygfnsptsalqdhsdkktkinypragrrtpffsvqpfic NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15742 PDP1::ENSG00000258422 ENSG00000164951.16::ENSG00000258422.6 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2745 TRUE 1058 PDP1 ENSG00000164951.16 protein_coding + + chr8:93857807-93926068:+ chr8:93917079:+ chr8:94870035-94938296:+ chr8:94929307:+ ENSG00000258422 ENSG00000258422.6 lncRNA + + chr14:70187123-70230187:+ chr14:70223562:+ chr14:70653840-70696904:+ chr14:70690279:+ chr8:93919824,chr8:93919822 chr14:70211241,chr14:70211236 NA NA chr8:94932052,chr8:94932050 chr14:70677958,chr14:70677953 NA NA sense sense unknown 5'UTR/splice-site intron translocation high none none none 2 12 6 193 18 ENST00000297598.5 ENST00000554008.5 downstream upstream duplicates(1),mismatches(1) CGGCCCCGCACGGTAGGGGAGCAGAGTGGGCAGGCCGGGGGTGAGGGCTCGCGCTCCGGGAGCTGCACGGGGCTGCGTGGAAAGAGCGCCGAGCGGTGGCGTCGTTGTCGCCCCCTCCTCGTCGGGAAGAATCGTTTGGTCTCCTGCCGTGCCCG|GAAAAACTCGGTTCTTGCGACACGACGAGGAAAGATTAGGCACGGAGACACTTTGAAGGGTGAGAAGTTACGGAATGTATT...GTGAAAAGGAAAAAGATTCTCAACAAAGTGAGAGGGGCTCCTGAGTGAGAGGGGCTCCTGTTAACAGGCCCCCACGTCACAGACTA...___GAACGGGAaGGGCCGACTCCTCCCCATGCAAACAGCGGCAGCTTCCCGAGGCCCCACCGCTTCCTCCCAGCGCGTAGGCCAATGGGAGA-TTCTCCAG___GTGTGTATTTGTTCATTCGCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15743 PDP1::ENSG00000258422 ENSG00000164951.16::ENSG00000258422.6 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2745 TRUE 1058 PDP1 ENSG00000164951.16 protein_coding + + chr8:93857807-93926068:+ chr8:93917079:+ chr8:94870035-94938296:+ chr8:94929307:+ ENSG00000258422 ENSG00000258422.6 lncRNA + + chr14:70187123-70230187:+ chr14:70227572:+ chr14:70653840-70696904:+ chr14:70694289:+ chr8:93919824,chr8:93919822 chr14:70211241,chr14:70211236 NA NA chr8:94932052,chr8:94932050 chr14:70677958,chr14:70677953 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 4 1 193 26 ENST00000297598.5 ENST00000555480.5 downstream upstream none GGGAGCAGAGTGGGCAGGCCGGGGGTGAGGGCTCGCGCTCCGGGAGCTGCACGGGGCTGCGTGGAAAGAGCGCCGAGCGGTGGCGTCGTTGTCGCCCCCTCCTCGTCGGGAAGAATCGTTTGGTCTCCTGCCGTGCCCG|GTGTGTATTTGTTCATTCGCGCACTGCTATAAAGAAATACCTGAGACTGGGTAATTTATAAAGAAAAGAAGTTAATTGACTCAGTTCTGCAGGCAATACAGGAAGCAAGATGCTGTCATCCGCTTGGCTTCAG___ACTGGCTATGTGGATGCTGGAAGATGGGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15744 DLG1::ENSG00000272741 ENSG00000075711.21::ENSG00000272741.1 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197282679:- chr3:196769431-197026201:- chr3:197009550:- ENSG00000272741 ENSG00000272741.1 protein_coding - - chr3:196248230-196318222:- chr3:196248323:- chr3:195975101-196045093:- chr3:195975194:- chr3:197218774,chr3:197218909 chr3:196252778,chr3:196253101 NA NA chr3:196945645,chr3:196945780 chr3:195979649,chr3:195979972 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion high none L27_1(100%),Polyubiquitination_(PEST)_N-terminal_domain_of_MAGUK(0%)| L27_1(100%),MAGUK_N_PEST(0%)|CTP_transf_like(100%) 14 2 4 239 158 ENST00000663148.1 ENST00000431391.1 upstream downstream low_entropy(1),mismatches(1) CAAGAATTTTATGAAGTGACCTTACTGGATAATCCAAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTGGGAGATTTCCAGCCTTCCAAGCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAG|GTGAGCGACCTGTGAGAGTTTATGCCGATGGAATATTTGACTTATTTCACTCTGGTCACGCCCGAGCTCTGATGCAAGCGAAGAACCTTTTCCC QEFYEVTLLDNPKCIDRSKPSEPIQPVNTWEISSLPSSTVTSETLPSSLSPSVE|vsdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15751 WDSUB1::BAZ2B ENSG00000196151.11::ENSG00000123636.19 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE TRUE 1535 TRUE 2747 TRUE 1059 WDSUB1 ENSG00000196151.11 protein_coding - - chr2:159235798-159286703:- chr2:159256196:- chr2:160092309-160143214:- chr2:160112707:- BAZ2B ENSG00000123636.19 protein_coding - - chr2:159318979-159616569:- chr2:159337772:- chr2:160175490-160473080:- chr2:160194283:- chr2:159255099,chr2:159255119 chr2:159344866,chr2:159344880 NA NA chr2:160111610,chr2:160111630 chr2:160201377,chr2:160201391 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SAM_domain_(Sterile_alpha_motif)(91%),U-box_domain(0%),WD_domain__G-beta_repeat(100%)|Bromodomain(100%),PHD-finger(100%) SAM_1(1%),SAM_2(1%),SAM_PNT(100%),U-box(0%),WD40(100%)|Bromodomain(100%),PHD(100%) 2 4 5 97 56 ENST00000359774.9 ENST00000392782.5 upstream downstream duplicates(1) GTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTTGGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATGATTTGAAAATTG|GGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGACGAAAGCAGTGCACATGCACTAGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAG___AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATC...AAATCTGTCGAAAGGGAGATAATGAAGAACTGCTTCTTCTTTGTGATGGCTGTGACAAAGGCTGTCATACCTACTGCCATAGACCCAAGATTACAACAA VSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKI|gldvsracirkgglgif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Lung squamous cell carcinoma BREAST,LUNG no_match 160136272|160132057|160128213,160104883 FALSE|FALSE|FALSE,FALSE 160189197|160189197|160189197,160269056 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15752 WDSUB1::BAZ2B ENSG00000196151.11::ENSG00000123636.19 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2747 TRUE 1059 WDSUB1 ENSG00000196151.11 protein_coding - - chr2:159235798-159286703:- chr2:159271702:- chr2:160092309-160143214:- chr2:160128213:- BAZ2B ENSG00000123636.19 protein_coding - - chr2:159318979-159616569:- chr2:159337772:- chr2:160175490-160473080:- chr2:160194283:- chr2:159255099,chr2:159255119 chr2:159344866,chr2:159344880 NA NA chr2:160111610,chr2:160111630 chr2:160201377,chr2:160201391 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none WD_domain__G-beta_repeat(80%)|Bromodomain(100%),PHD-finger(100%) WD40(27%)|Bromodomain(100%),PHD(100%) 0 0 0 33 56 ENST00000359774.9 ENST00000392782.5 upstream downstream mismatches(1) CCCATGATGGGCAGATGCTAGTCTCAGG|GGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATaATGGAG HDGQMLVSg|vgcvqslhqkgrtwyilninhllncarsim NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Lung squamous cell carcinoma BREAST,LUNG no_match 160136272|160132057|160128213,160104883 FALSE|FALSE|TRUE,FALSE 160189197|160189197|160189197,160269056 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15755 RFX3::GLIS3 ENSG00000080298.16::ENSG00000107249.24 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE TRUE 1536 TRUE 2748 TRUE 1060 RFX3 ENSG00000080298.16 protein_coding - - chr9:3218297-3526004:- chr9:3525747:- chr9:3218297-3526004:- chr9:3525747:- GLIS3 ENSG00000107249.24 protein_coding - - chr9:3824127-4348392:- chr9:3932470:- chr9:3824127-4348392:- chr9:3932470:- chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Zinc_finger__C2H2_type(51%) |zf-C2H2(0%) 0 4 2 29 79 ENST00000617270.5 ENST00000381971.8 upstream downstream none GTGCGAGTGTCTCCCTCTCCCTCTCGCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTTTGTGAGTTATAGCAACCGTTGCCTTGTGAATCAAGCGCCATAG...CGACTGTTACCCATCAACAACAACTACTCCTCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCACCACCACCATCTCCATCACCCACCAACAACACCACAATAATCCACAGCCAAG|AAACCTTATGCTTGTCAAATTCCAGGATGTACCAAACGCTACACAGACCCAAGTTCCCTAAGAAAGCATGTGAAGGCACATTCTTCCAAAGAGCAACAAGCAAGGAAAAAG___TTGCGGTCCAGCACAGAGCTCCATCCAGACCTGCTCACAGATTGCCTCACCGTGCAGTCCCTGCAGCCGGCCACTTCCCCTAGAGATGCTGC...AAcCTCTTCTTaTCAACCAAATGGTATCCATGTCCATG___GATTTTATGGGCAGCTGCAGAAGTTCTGTCCCCCACACTACCCCGATTCCCAGAGAATTGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15756 RFX3::GLIS3 ENSG00000080298.16::ENSG00000107249.24 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2748 TRUE 1060 RFX3 ENSG00000080298.16 protein_coding - - chr9:3218297-3526004:- chr9:3525747:- chr9:3218297-3526004:- chr9:3525747:- GLIS3 ENSG00000107249.24 protein_coding - - chr9:3824127-4348392:- chr9:3932918:- chr9:3824127-4348392:- chr9:3932918:- chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none |Zinc_finger__C2H2_type(51%) |zf-C2H2(0%) 0 1 2 29 3 ENST00000617270.5 ENST00000682864.1 upstream downstream none GTGCGAGTGTCTCCCTCTCCCTCTCGCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTTTTGTGAGTTATAGCAACCGTTGCCTTGTGAATCAAGCGCCATAG...CGACTGTTACCCATCAACAACAACTACTCCTCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCACCACCACCATCTCCATCACCCACCAACAACACCACAATAATCCACAGCCAAG|GTTTCTTCTGAAAAATACCCAGTTTTTTTCTGGACTTTCTACAGCTTCTTTACCTGAACCCTTAAAGAATATGTGTTTACTAGTTTCTGACAGTACCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15757 VPS13B-DT::DOCK3 ENSG00000253948.4::ENSG00000088538.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS13B-DT ENSG00000253948.4 lncRNA - - chr8:98957568-99013743:- chr8:99012869:- chr8:99969796-100025971:- chr8:100025097:- DOCK3 ENSG00000088538.13 protein_coding + + chr3:50674927-51384198:+ chr3:50778675:+ chr3:50712358-51421629:+ chr3:50816106:+ chr8:98996368,chr8:98996521,chr8:98996523 chr3:50754098,chr3:50754039,chr3:50754037 NA NA chr8:100008596,chr8:100008749,chr8:100008751 chr3:50791529,chr3:50791470,chr3:50791468 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |C2_domain_in_Dock180_and_Zizimin_proteins(100%),DHR-2__Lobe_A(100%),DOCK_N-terminus(100%),Variant_SH3_domain(93%) |DHR-2(100%),DOCK-C2(100%),DOCK_N(100%),SH3_2(51%) 0 1 3 79 7 ENST00000653552.1 ENST00000266037.10 upstream upstream none TGGCGCTCCGGGGAGAAGGTGGCTGCGGCTGCTGGGGCCGCTGCGCCGGCGGCGGTTCCCGATGTGGAGGTCCGTCTTGGGTGGGGAGGCACCCAGGTCGCTGGTTCGATGCAGAGGAAGAAACCACACCTAGCACGTAAAGCCCTGAAAAAATAGAG|TGATATGCAGCTTTCGAGGATCTGTCCCTCAAGGGTTGGTCTTAGAAATAGGAGAAACAGTCCAGATTCTTGAAAAATGTGAAG___GTTGGTACAGAGGAGTTTCAACAAAGAAGCCAAATGTGAAG___GGGATCTTTCCTGCAAATTACATTCACTTGAAAAAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15761 SMAD7::GFRA3 ENSG00000101665.10::ENSG00000146013.11 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMAD7 ENSG00000101665.10 protein_coding - - chr18:48919853-48950965:- chr18:48942481:- chr18:46446223-46477335:- chr18:46468851:- GFRA3 ENSG00000146013.11 protein_coding - + chr5:138252380-138274621:- chr5:138269986:+ chr5:137588069-137610310:- chr5:137605675:+ chr18:48924910,chr18:48924910,chr18:48924910,chr18:48924910 chr5:138269880,chr5:138269864,chr5:138269867,chr5:138269856 NA NA chr18:46451280,chr18:46451280,chr18:46451280,chr18:46451280 chr5:137605569,chr5:137605553,chr5:137605556,chr5:137605545 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none MH1_domain(100%)| MH1(100%)| 2 1 0 188 4 ENST00000262158.8 unknown upstream upstream none CCCCCTCCTTACTCCAGATACCCGATGGATTTTCTCAAACCAACTG___...CAGACTGTCCAGATGCTGTGCCTTCCTCCGCTGAAACAGGGGGAACGAATTATCTGGCCCCTGGGGGGCTTTCAG|AATCATGGAACCAACCCAAATGCCCATCAATCAACGAATGGAACAGAAATTGTGATAGAATAGAATACTACTCAGCCATAAAAAGGAATGAATTGGCC DCPDAVPSSAETGGTNYLAPGGLS|eswnqpkcpsinewnrncdrieyysaikrnel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15762 ENSG00000226471::ZC3H7B ENSG00000226471.7::ENSG00000100403.12 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000226471 ENSG00000226471.7 lncRNA + + chr22:28800683-28848559:+ chr22:28822179:+ chr22:29196671-29244547:+ chr22:29218167:+ ZC3H7B ENSG00000100403.12 protein_coding + + chr22:41301525-41360147:+ chr22:41355469:+ chr22:41697529-41756151:+ chr22:41751473:+ chr22:28825539 chr22:41354335 NA NA chr22:29221527 chr22:41750339 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%) |zf-CCCH(100%) 1 0 2 45 397 ENST00000458080.1 ENST00000352645.5 downstream upstream mismatches(1) CCGGCGTGGCAGCGGCAATCCCTGGCCAAAG___TGTGCCTTCAGCCAAAAGCAGAACTGGAAACATCCTAAGTGGGCCGGTAACGAGGCTAGCTCTGTCGACTAGTTCAAGACCCCTGAGCGCTTTGGGCCTGAGGTTCCTCAGCTTCCAAGTGAAAGGCTTCGACTTGGCATTCTAAGAGACAATCTCTGTGACCATCAGTTTCCTCATCTGTAAAACTGGCATCATGATAACTTTGAAG|GGTGCTCCGAGGACACATGGGCCCAGCACCTTTGACCTGCAGATGAAGTTTGTATGTGGCCAGTGCTGGAGAAACGGGCAGGTGGTGGAGCCTGACAAGGACCTCAAGTACTGTAGTGCCAAGGCCCGGCACTG___CTGGACCAAGGAaCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15763 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 2750 TRUE 1061 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45248003:+ chr17:43325283-43347191:+ chr17:43325370:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 1 39 2 62 118 ENST00000657572.1 ENST00000344686.8 downstream downstream duplicates(2),mismatches(1) GGCTGGATCAGGCGGAAGCCGGGGCCCGGGGCTGGGCTTCGTGTCCTGCGTTCCGGGAGCGCCAACCCCTCCAG|TGGGAGGTCTGAAGAGCCCTTGGAGGGGAGAATATAAAGAACCAAGACATCCACCGCCAAATCAAGCCAATTACCACCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGCCAAGGGCCCCAGGGCCCCGGCCAGCTGAGGAGACAACAGGCAGAGCCCCTAAGCTCCAGCCTCCTCTCCCACCAGAGCCCCCAGAGCCAAACAAGTCTCCTCCCTTGACTTTGAGCAAGGAGGAGTCTGGGATGTGGGAACCCTTACCTCTGTCCTCCCTGGAGCCAGCCCCTGCCAGAAACCCCAGCTCACCAGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15764 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 2750 TRUE 1061 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45249632:+ chr17:43325283-43347191:+ chr17:43326999:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 6 3 2 16 118 ENST00000592422.5 ENST00000344686.8 downstream downstream none CTGGGCTTCGTGTCCTGCGTTCCGGGAGCGCCAACCCCTCCAG___GCTGGAGTGCAGTGGCGAGATCTCGGCTCACTGCAGCCTCAACCTCCCAAGGCTCAAACGATCCTCTCGCCTCAGCCTTCTGAGTAGCTGGGATCACAG|TGGGAGGTCTGAAGAGCCCTTGGAGGGGAGAATATAAAGAACCAAGACATCCACCGCCAAATCAAGCCAATTACCACCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15776 DCAKD::NMT1 ENSG00000172992.13::ENSG00000136448.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2752 TRUE 1062 DCAKD ENSG00000172992.13 protein_coding - - chr17:45023338-45061131:- chr17:45030092:- chr17:43100706-43138499:- chr17:43107460:- NMT1 ENSG00000136448.13 protein_coding + + chr17:44957992-45109016:+ chr17:45061283:+ chr17:43035360-43186384:+ chr17:43138651:+ chr17:45028876,chr17:45028882 chr17:45054761,chr17:45054755 NA NA chr17:43106244,chr17:43106250 chr17:43132129,chr17:43132123 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Dephospho-CoA_kinase(74%)|Myristoyl-CoA:protein_N-myristoyltransferase__C-terminal_domain(100%),Myristoyl-CoA:protein_N-myristoyltransferase__N-terminal_domain(100%) CoaE(46%)|NMT(100%),NMT_C(100%) 4 5 2 130 129 ENST00000342350.10 ENST00000592782.5 upstream upstream mismatches(2) AGGAGACGTTCAAGTACTTCCTCCGGG___GATACCGCTACGTGATTCTGGATATCCCCCTGCTGTTTGAGACCAAGAAGTTGCTCAAGTACATGAAGCACACCGTGGTAGTATACTG|GAACCCCCCATGTAGTGGGGCGCGGAGCCCTGCTCTCGCAACTCAAGATGGCGGACGAGAGTGAGACAGCAGTGAAGCCGCCGGCACCTCCGCTGCCGCAGATGATGGAAGGGAACGGGAACGGCCATGAGCACTGCAGCGATTGCGAGAATGAGGAGG ETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYw|nppcsgarspalatqdggre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15777 DCAKD::NMT1 ENSG00000172992.13::ENSG00000136448.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2752 TRUE 1062 DCAKD ENSG00000172992.13 protein_coding - - chr17:45023338-45061131:- chr17:45030092:- chr17:43100706-43138499:- chr17:43107460:- NMT1 ENSG00000136448.13 protein_coding + + chr17:44957992-45109016:+ chr17:45081644:+ chr17:43035360-43186384:+ chr17:43159012:+ chr17:45028876,chr17:45028882 chr17:45054761,chr17:45054755 NA NA chr17:43106244,chr17:43106250 chr17:43132129,chr17:43132123 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Dephospho-CoA_kinase(74%)|Myristoyl-CoA:protein_N-myristoyltransferase__C-terminal_domain(100%),Myristoyl-CoA:protein_N-myristoyltransferase__N-terminal_domain(100%) CoaE(46%)|NMT(100%),NMT_C(100%) 0 1 0 130 1075 ENST00000342350.10 ENST00000592782.5 upstream upstream none GTTTGAGACCAAGAAGTTGCTCAAGTACATGAAGCACACCGTGGTAGTATACTG|TGGTTTGAGTCCAGCCAATGACACTGGAGCCAAAAAGAAGAAAAAGA...AAAAAAAGAAGAAAGAAAAAGGCAGTGAGACAGATTCAGCCCAGGATCAGCCTGTGAAG___ATGAACTCTTTGCCAGCAGAGAGGATCCAGGAAATACAGAAG FETKKLLKYMKHTVVVYc|GLSPANDTGAKKKKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15820 NF2::RGS12 ENSG00000186575.19::ENSG00000159788.20 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2759 FALSE NA NF2 ENSG00000186575.19 protein_coding + + chr22:29603556-29698598:+ chr22:29604112:+ chr22:29999545-30094587:+ chr22:30000101:+ RGS12 ENSG00000159788.20 protein_coding + - chr4:3293021-3439913:+ chr4:3346972:- chr4:3294748-3441640:+ chr4:3348699:- chr22:29625195 chr4:3353295 NA NA chr22:30021184 chr4:3355022 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none FERM_N-terminal_domain_(17%),FERM_central_domain(1%)| FERM_M(0%),FERM_N(0%)| 95 83 111 313 259 ENST00000413209.6 unknown downstream downstream duplicates(18),mismatches(10) GGCTCAGAGTGCAGGCCGTGGGGCGCGAGGGTCCCGGGCCTGAGCCCCGCGCCATGGCCGGGGCCATCGCTTCCCGCATGAGCTTCAGCTCTCTCAAGAGGAAGCAACCCAAGACGTTCACCGTGAGGATCGTCACCATGGACGCCGAGATGGAGTTCAATTGCGAG|CAGGATACAACTGAGACCAGTGGTTCTGTTCCCAATGCCTTGTCTGGAATCTCAAATTTGAGAACGTGCATAGAATACCCTGCTTCAAGGGTTCCTAGACTTACAGCGG___TCTCTGCAGAAGTACAACTCCTAACAGAATCGTGCTGGCCCAGCGCGTTGAGATGATGCCAACACCCATGGAACAGACAAAACC MAGAIASRMSFSSLKRKQPKTFTVRIVTMDAEMEFNCE|qdttetsgsvpnalsgisnlrtcieypasrvprltavsaevqlltescwpsalr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE neurofibromatosis type 2 gene 1 Yes meningioma, acoustic neuroma, renal meningioma, acoustic neuroma neurofibromatosis type 2 other TSG large_deletion, missense, nonsense, frameshift, splice_site, other FALSE NA NA NA NA NA NA NA NA NA 15822 SDHD::ENSG00000291325 ENSG00000204370.13::ENSG00000291325.1 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SDHD ENSG00000204370.13 protein_coding + + chr11:112086824-112120016:+ chr11:112089012:+ chr11:111957548-111990739:+ chr11:111959736:+ ENSG00000291325 ENSG00000291325.1 lncRNA + - chr2:4284012-4630252:+ chr2:4446161:- chr2:4331602-4677842:+ chr2:4493751:- chr11:112089604,chr11:112089605 chr2:4455109,chr2:4455108 NA NA chr11:111960328,chr11:111960329 chr2:4502699,chr2:4502698 NA NA sense antisense out-of-frame 3'UTR/splice-site intron translocation/5'-5' high none CybS__succinate_dehydrogenase_cytochrome_B_small_subunit(48%)| none 27 42 52 1879 149 ENST00000528021.6 unknown downstream downstream duplicates(2),low_entropy(2),mismatches(5),multimappers(1) GCTCATATCTCAGCATTTCTTCAGGACCGACCTATCCCAGAATGGTGTGGAGTGCAGCACATACACTTGTCACCGAGCCACCATT___CTGGCTCCAAGGCTGCATCTCTCCACTGGACTAGtGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTTCCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCCCTGGCTGCAGCCCTCACTCTTCATGGTCACTGG|TCGCTGGAGAGGCCAGAGCCATGACAAGTTTTGTGGAGCTGGATGGAAATGGAAGAAGAAAGTCATTGTTTCCTCCCTTCAAAGAAAACTTCCCAGATACTGCACACATTTCTTTTCACATCTCCGTGTTAGAACTTGATAGCGTGGTCATACCTAGTGATGGGGGAAGCTGGGCACATTGCCAACCCAAATGGAAGAGGGATGAGATAAGCAACAT AHISAFLQDRPIPEWCGVQHIHLSPSHHSGSKAASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHw|slerpep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit D, integral membrane protein 1 paraganglioma, pheochromocytoma familial paraganglioma other TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 15823 ENSG00000255292::ENSG00000291325 ENSG00000255292.9::ENSG00000291325.1 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255292 ENSG00000255292.9 protein_coding + + chr11:112086903-112193805:+ chr11:112089012:+ chr11:111957627-112064528:+ chr11:111959736:+ ENSG00000291325 ENSG00000291325.1 lncRNA + - chr2:4284012-4630252:+ chr2:4446161:- chr2:4331602-4677842:+ chr2:4493751:- chr11:112089604,chr11:112089605 chr2:4455109,chr2:4455108 NA NA chr11:111960328,chr11:111960329 chr2:4502699,chr2:4502698 NA NA sense antisense unknown intron intron translocation/5'-5' high none none CybS(1%)| 27 42 51 1879 149 ENST00000525987.5 unknown downstream downstream duplicates(2),low_entropy(2),mismatches(5),multimappers(1) GCTCATATCTCAGCATTTCTTCAGGACCGACCTATCCCAGAATGGTGTGGAGTGCAGCACATACACTTGTCACCGAGCCACCATT___CTGGCTCCAAGGCTGCATCTCTCCACTGGACTAGtGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTTCCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCCCTGGCTGCAGCCCTCACTCTTCATGGTCACTGG|TCGCTGGAGAGGCCAGAGCCATGACAAGTTTTGTGGAGCTGGATGGAAATGGAAGAAGAAAGTCATTGTTTCCTCCCTTCAAAGAAAACTTCCCAGATACTGCACACATTTCTTTTCACATCTCCGTGTTAGAACTTGATAGCGTGGTCATACCTAGTGATGGGGGAAGCTGGGCACATTGCCAACCCAAATGGAAGAGGGATGAGATAAGCAACAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15825 FLYWCH1::FLYWCH2 ENSG00000059122.17::ENSG00000162076.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FLYWCH1 ENSG00000059122.17 protein_coding + + chr16:2911931-2951208:+ chr16:2938456:+ chr16:2961932-3001209:+ chr16:2988457:+ FLYWCH2 ENSG00000162076.13 protein_coding + + chr16:2883213-2899382:+ chr16:2899049:+ chr16:2933214-2949383:+ chr16:2949050:+ chr16:2938601,chr16:2938600 chr16:2897472,chr16:2897470 NA NA chr16:2988602,chr16:2988601 chr16:2947473,chr16:2947471 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FLYWCH-type_zinc_finger-containing_protein(100%),FLYWCH-type_zinc_finger-containing_protein_1(100%),FLYWCH_zinc_finger_domain(100%)| FLYWCH(100%),FLYWCH_N(100%),FLYWCH_u(100%)| 52 20 31 359 420 ENST00000253928.14 ENST00000293981.10 downstream upstream duplicates(5),inconsistently_clipped(1),mismatches(11) TCCTGGTGCACGAGTCCTTCCTCTACAGGAAGGAGAAGGCGGCTGGGGAGAAGGTGTACTGGATGTGCCGGGACCAGGCTCGGCTGGGCTGCCGCAGCCGCGCCATAACCCAGGGCCACCGCATCATGGTCATGCGCAGCCACTGCCATCAGCCTGACCTGGCAGGCCTGGAGGCCTTGAGGCAACGGGAGCGGCTCCCCACCACGGCCCAGCAGGAGGACCCAG|GCACAGACAGAACAGAAGACAGTGGATTAGCAGCGGGGCCTCCTGAGGCTGCTGGGGAGAACTTTGCCCCCTGCTCTGTGGCGCCCGGCAAGTCCCTGTAACCTTGACAACAGGCGCATCCTCCCAGGCCACCAACCCAGCCATAGGCTCTTCTCTGTCCGCAGGGCTTCTGGGGCCAAATGGGTGAATCTTTGCTTTTAACATTGTG LVHESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRSHCHQPDLAGLEALRQRERLPTTAQQEDP|gTDRTEDSGLAAGPPEAAGENFAPCSVAPGKSL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15826 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2760 FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59648401:+ chr17:57697045-57774317:+ chr17:57725762:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59649813,chr17:59649814 chr17:59838989,chr17:59838987 NA NA chr17:57727174,chr17:57727175 chr17:57916350,chr17:57916348 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion/read-through high none Clathrin_propeller_repeat(59%)| Clathrin_propel(1%)| 61 13 21 1375 1340 ENST00000584313.5 ENST00000262291.9 downstream upstream duplicates(3),mismappers(5),mismatches(5) TATGAATGACCCAAGTAATCCAATTCGAAGACCAATTTCAGCAGACAGCGCCATCATGAATCCAGCTAGCAAAGTAATTGCACTGAAAG___CAAAATCGTGTGGTGGGAGCTATGCAGCTATATTCTGTAGATAGGAAAGTGTCTCAGCCCATTGAAGGACATGCAGCTAGCTTTGCACAGTTTAAGATGGAAGGAAATGCAGAAGAATCAACGTTATTTTGTTTTGCAGTTCGGGGCCAAGCTGGAGGGAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 15831 MAST2::ATP8A2 ENSG00000086015.23::ENSG00000132932.19 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAST2 ENSG00000086015.23 protein_coding + + chr1:45786987-46036122:+ chr1:46008371:+ chr1:46252659-46501794:+ chr1:46474043:+ ATP8A2 ENSG00000132932.19 protein_coding + - chr13:25371974-26025851:+ chr13:25538656:- chr13:25946112-26599989:+ chr13:26112794:- chr1:46009437,chr1:46009431 chr13:25549401,chr13:25549407 NA NA chr1:46475109,chr1:46475103 chr13:26123539,chr13:26123545 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Domain_of_unknown_function_(DUF1908)(47%)| DUF1908(42%)| 30 19 32 149 68 ENST00000361297.7 unknown downstream downstream duplicates(4),mismappers(1),mismatches(4) ATTTCAGCACAGAGAGCGTACCAGATGAGGAAGGACGGCAGTCCCCAGCCATGCGGCCTCGCTCCCGGAGCCTCAG___TCCCGGACGATCCCCAGTATCCTTTGACAGTGAAATAATAATGATGAATCATGTTTACAAAGAAAGATTCCCAAAG|CTATGTACTTTCATGCACCAAGCCCCAAAAAAGTCAAGAACTGCACTGAGTGATGATTCCTTCCTAGAATAAAACTACCTAGAGAATATGAAAATGATACTTGGACAGAAAAGGGGCAAAACATGGATGGATGAAGAGCAAACACCATCTGCTGGTCACGATTACGCTGAGAAAACACCCAtGGTTCTTGAACAGCTATCAATGTGCAG FSTESVPDEEGRQSPAMRPRSRSLSPGRSPVSFDSEIIMMNHVYKERFPK|lctfmhqapkksrtalsddsfle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 2 AGC MAST Q6P0Q8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15832 CELF2::SLC35F3 ENSG00000048740.19::ENSG00000183780.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CELF2 ENSG00000048740.19 protein_coding + + chr10:10798397-11336675:+ chr10:11288552:+ chr10:10840360-11378674:+ chr10:11330515:+ SLC35F3 ENSG00000183780.13 protein_coding + - chr1:233904676-234324511:+ chr1:234157837:- chr1:234040422-234460257:+ chr1:234293583:- chr10:11308374,chr10:11308372 chr1:234159949,chr1:234159951 NA NA chr10:11350337,chr10:11350335 chr1:234295695,chr1:234295697 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(64%)| RRM_1(89%)| 25 18 23 134 48 ENST00000637215.1 unknown downstream downstream mismatches(4) CTGACAGGGCTGGGCGGACTGACCCCACAGTATCTGGCG___CTCCTGCAGCAGGCCACCTCCTCCAGCAACCTGGGTGCGTTCAGCGGCATTCAACAAATGGCAG___GCATGAATGCTTTACAGTTGCAGAACCTGGCGACGCTGGCTGCTGCTGCAGCTGCGGCCCAGACCTCAGCCACCAGCACCAATGCAAACCCTCTCTCTACCACGAGCAGCGCCCTGGGAGCCCTCACGAGTCCCG|AGTTATTTCTGGTGAAGAAATGTCATGATCAGGTCTGAATGCAGAACAATATAAAATTAAGAATTAAGTGCTTCATCAAGTTTCTGCACGTGAGCCACCAGCAGCTTTGCATGTACTGTAAGTGCCAGCCAATGAGGTTAATGATTCAAAAACCCAGAGTACAAGGAGAATACAATGTGCAAAGGAAATGGGCCCCGCCACCTTGCTCAAGTGCCGTGTGAAGACATGGATGCTGAAAACAAAATCTTTCCCGAGAGAAAACAACCATG LTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP|elflvkkchdqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15834 WDR33::SAP130 ENSG00000136709.12::ENSG00000136715.19 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE TRUE 1538 TRUE 2761 TRUE 1063 WDR33 ENSG00000136709.12 protein_coding - - chr2:127701027-127811187:- chr2:127811012:- chr2:128458601-128568761:- chr2:128568586:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127955344:- chr2:128698791-128785694:- chr2:128712918:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Histone_deacetylase_complex_subunit_SAP130_C-terminus(86%) |SAP130_C(29%) 14 20 25 619 412 ENST00000322313.9 ENST00000259234.10 upstream downstream duplicates(1),mismappers(1),mismatches(23) GGCCCATAGGGGAAGATGGCGGCTGCTCCTTTGGAGGAGCGGGATTGAGAGGATCGGGGTGGGGAGACCAAACAAGAGAGACATTTCTGGCTCTGAAGGCGAACGCTTCGCTGGCCATTTAGGAGCTCTGCTCAAAGCCAGACG|TGCCAAACCCAAGTCTGAAATCCACGTGTCTATGGCCACTCCGGTCACTGTGTCCATGGAGACTGTATCCAATCAAAATAATGATCAGCCTACCATTGCCGTCCCTCCAACTGCCCAGCAGCCCCCACCGACCATTCCAACTATGATTGCAGCAGCCAGTCCCCCGTCACAACCAGCCGTTGCCCTTTCAACCATTCCTGGAGCGGTCCCCATCACTCCACCCATCACCACCATTGCAGCTGCACCACCTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15835 WDR33::SAP130 ENSG00000136709.12::ENSG00000136715.19 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 2761 TRUE 1063 WDR33 ENSG00000136709.12 protein_coding - - chr2:127701027-127811187:- chr2:127810749:- chr2:128458601-128568761:- chr2:128568323:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127955344:- chr2:128698791-128785694:- chr2:128712918:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Histone_deacetylase_complex_subunit_SAP130_C-terminus(86%) |SAP130_C(29%) 0 1 25 11 412 ENST00000408998.1 ENST00000259234.10 upstream downstream duplicates(1),mismatches(11) GTGGCGACGAGAAGAC|TGCCAAACCCAAGTCTGAAATCCACGTGTCTATGGCCACTCCGGTCACTGTGTCCATGGAGACTGTATCCAATCAAAATAATGATCAGCCTACCATTGCCGTCCCTCCAACTGCCCAGCAGCCCCCACCGACCATTCCAACTATGATTGCAGCAGCCAGTCCCCCGTCACAACCAGCCGTTGCCCTTTCAACCATTCCTGGAGCGGTCCCCATCACTCCACCCATCACCACCATTGCAGCTGCACCACCTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15836 WDR33::SAP130 ENSG00000136709.12::ENSG00000136715.19 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 2761 TRUE 1063 WDR33 ENSG00000136709.12 protein_coding - - chr2:127701027-127811187:- chr2:127811012:- chr2:128458601-128568761:- chr2:128568586:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127950408:- chr2:128698791-128785694:- chr2:128707982:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Histone_deacetylase_complex_subunit_SAP130_C-terminus(57%) |SAP130_C(18%) 1 0 1 619 414 ENST00000436787.5 ENST00000259234.10 upstream downstream none CAGAGCGTGCGTTCGGTGGCCCATAGGGGAAGATGGCGGCTGCTCCTTTGGAGGAGCGGGATTGAGAGGATCGGGGTGGGGAGACCAAACAAGAGAGACATTTCTGGCTCTGAAGGCGAACGCTTCGCTGGCCATTTAGGAGCTCTGCTCAAAGCCAGACG|CAGTTCCTCCACTGGCTACCAACACTGTGTCTCCATCTCTTGCATTGCTGGCAAACAACTTGTCCATGCCTACAAGTGACCTACCACCTGGTGCCcCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15838 CHCHD3::EXOC4 ENSG00000106554.13::ENSG00000131558.15 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2762 FALSE NA CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:132885662:- chr7:132469631-132766850:- chr7:132570422:- EXOC4 ENSG00000131558.15 protein_coding + - chr7:133253073-134066589:+ chr7:133443697:- chr7:132937829-133751342:+ chr7:133128451:- chr7:132872901,chr7:132872903,chr7:132872903 chr7:133454312,chr7:133454305,chr7:133454311 NA NA chr7:132557661,chr7:132557663,chr7:132557663 chr7:133139066,chr7:133139059,chr7:133139065 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none MICOS_complex_subunit_MIC19/MIC25(84%)| MIC19_MIC25(79%)| 8 5 35 2289 19 ENST00000262570.10 unknown upstream downstream duplicates(1),mismappers(1),mismatches(4) ACTAAAGCAAGCCAAAGAGCTGGACCGAGAGAGGGCTGCTGCCAATGAGCAGTTAACCAGAGCCATCCTTCGGGAGAGGATATGTAGCGAGGAGGAACGCGCTAAGGCAAAGCACCTG___GCTAGGCAGCTGGAAGAGAAAGACCGAGTGCTAAAGAAGCAGGATGCATTCTACAAAGAACAGCTGGCTAGACTGGAGGAGAGG|CCAGGAAAATGGGAGAACCTTTGATAAAGGCCACTCACACCACCCACTGATGCCCCCAGGAGGTCAAGACAACCTGCATGGAAGTGAATCTGTAGAGCTGCAGAGACAAACACTCACCCAAAGCATCTGCTGGATTCTACACCCTGGTGCTTGACCATGGGGAAGGTCACTGAGGAGTTTTTGGTATTTGAGTTTCTACCACCAGACTGAAGTGACAATAGACTCAGGGACAACT LKQAKELDRERAAANEQLTRAILRERICSEEERAKAKHLARQLEEKDRVLKKQDAFYKEQLARLEER|pgkwenl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3654 chr7:133034860-133034915:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15839 EXOC4::CHCHD3 ENSG00000131558.15::ENSG00000106554.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133375002:+ chr7:132937829-133751342:+ chr7:133059756:+ CHCHD3 ENSG00000106554.13 protein_coding - - chr7:132784870-133082090:- chr7:132838469:- chr7:132469631-132766850:- chr7:132523229:- chr7:133454311,chr7:133454311 chr7:132872932,chr7:132872949 NA NA chr7:133139065,chr7:133139065 chr7:132557692,chr7:132557709 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Sec8_exocyst_complex_component_specific_domain(100%)|MICOS_complex_subunit_MIC19/MIC25(15%) Sec8_exocyst(100%)|MIC19_MIC25(0%) 1 0 0 294 1838 ENST00000253861.5 ENST00000262570.10 downstream downstream none AACAGTTAAGGCAATCATAGAGCGCTTGGAGCAGGAGTTGAAGCAAATTGTGAAGAGGTCTACAACCCAGGTGGCAGACAGTGGCTATCAGCGGGGGGgGA...AGATCCAAGATGTTCTACAG|AGCTCAGAGTTCTACAGAGTCACCACTGAACAATATCAGAAAGCTGCTGAAGAGGTGGAAGCAAAGTTCAA___GCGATATGAG IQDVLQ|SSEFYRVTTEQYQKAAEEVEAKFKRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6133 chr7:133290881-133290988:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 133059756 TRUE 132754989 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15843 WWC2::TENM3 ENSG00000151718.16::ENSG00000218336.9 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE TRUE 1540 FALSE NA FALSE NA WWC2 ENSG00000151718.16 protein_coding + + chr4:183099257-183320777:+ chr4:183209025:+ chr4:184020410-184241930:+ chr4:184130178:+ TENM3 ENSG00000218336.9 protein_coding + + chr4:182143987-182803024:+ chr4:182628651:+ chr4:183065140-183724177:+ chr4:183549804:+ chr4:183236453,chr4:183236454,chr4:183236449 chr4:182610959,chr4:182610831,chr4:182610952 NA NA chr4:184157606,chr4:184157607,chr4:184157602 chr4:183532112,chr4:183531984,chr4:183532105 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%),Teneurin_Intracellular_Region(19%) WW(100%)|Ten_N(0%),Tox-GHH(100%) 14 5 17 158 43 ENST00000403733.8 ENST00000511685.6 downstream upstream duplicates(5),low_entropy(1),mismatches(5) AAGATGCTCAAGGACTACCTCTCTGTGGCACAGGATGCCCTCCGGACACAGAAGGAACTGTACCATGTGAAGGAGCAGAGGCTGGCGCTGGCCCTGGATGAATACGTGCGATTAAATGATGCCTATAAGGAAAAGTCAAGTTCTCACACAAGCT___TATTCTCAGGATCTTCATCCAGTACTAAATATGATCCCGATATTTTAAAAGCTGAGATCTCCACTACAAGATTAAGG|GCATTTCCTATTCAAAACAGGAACAGGTACAACGCCACTGTTCAGTACTGCAACCCCAGGATACACAATGGCATCTGGCTCTGTTTATTCACCACCTACTCGGCCACTACCTAGAAACACCCTATCAAGAAGTGCTTTTAAATTCAAGAAGTCTTCAAAGTACTGTAGCTGGAAATGCACTGCACTGTGTGCCGTAGGGGTCTCGGTGCTCCTGGCAATACTCCTGT KMLKDYLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEKSSSHTSLFSGSSSSTKYDPDILKAEISTTRLR|afpiqnrnrynatvqycnprihngiwlclfttysatt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15844 RASA2::SPINK5 ENSG00000155903.14::ENSG00000133710.17 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE TRUE 1541 FALSE NA FALSE NA RASA2 ENSG00000155903.14 protein_coding + + chr3:141487027-141615344:+ chr3:141487216:+ chr3:141205869-141334186:+ chr3:141206058:+ SPINK5 ENSG00000133710.17 protein_coding + + chr5:148025683-148137382:+ chr5:148086405:+ chr5:147405246-147516945:+ chr5:147465968:+ chr3:141509346,chr3:141509343 chr5:148083587,chr5:148083581 NA NA chr3:141228188,chr3:141228185 chr5:147463150,chr5:147463144 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none C2_domain(2%)|Kazal-type_serine_protease_inhibitor_domain(100%) C2(0%)|Kazal_1(100%),Kazal_2(100%) 8 19 4 46 37 ENST00000286364.9 ENST00000256084.8 downstream upstream duplicates(1),mismatches(4) TGCGGCACGGGCCGGGCGGCACCATGGCGGCGGCGGCGCCTGCTGCTGCGGCGGCTTCTTCCGAGGCGCCAGCGGCGAGTGCGACTGCAGAGCCCGAGGCCGGGGACCAGGACAGTCGCGAGGTTCGAGTGTTGCAGAGCCTGCGGGGCAAGATCT|CTGAATTGTGATGATTTTAAAAAAGGAGAAAGAGATGGGGATTTTATCTGTCCTGATTATTATGAAGCTGTTTGTGGCACAGATGGGAAAACATATGACAACAGATGTGCACTGTGTGCTGAGAATGC___GAAAACCGGGTCCCAAATTGGTGTAAAAAGTGAAGGGGAATGTAAGAGCAGTAATCCAGAGCAG___GATGTATGCAGTGCTTTTCGGCCCTTTGTTAGAGATGGAAGACTTGG MAAAAPAAAAASSEAPAASATAEPEAGDQDSREVRVLQSLRGKI|sel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15845 PCNX1::CLEC9A ENSG00000100731.16::ENSG00000197992.7 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:71034036:+ chr14:71374122-71582099:+ chr14:71500753:+ CLEC9A ENSG00000197992.7 protein_coding + - chr12:10030678-10066031:+ chr12:10049099:- chr12:10183277-10218630:+ chr12:10201698:- chr14:71035070,chr14:71035071 chr12:10058104,chr12:10058103 NA NA chr14:71501787,chr14:71501788 chr12:10210703,chr12:10210702 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 14 5 12 185 15 ENST00000304743.7 unknown downstream downstream mismatches(2) TTTCATTGGTCTCCTGCCTCAGGTGAATACATTTGTAATG?ACCTTTGTGAACAAT...GGCCAGCATATTCCAGTACTTTTCTCCATTTTTTGTGGTTTATTAGTGGCAGTGTCTTACCATCTCAGCCGACAAAGCAGTGATCCATCTGTACTTTT___CTCTTTAGTGCAATCCAAGATTTTTCCAAAAACGGAAGAGAAAAATCCAGAAGACCCTCTATCTGAAGTAAAAGATCCACTGCCTGAAAAACTTAGAAATTCTGTT|AGCTCCGATGAAGATGTACCAGGATATTAATGTTTTCATTCCTGCTAACACAGCCTCCATTTCTGCAACCAATGGATCAAGGAGTAATTTTGACTTTCAAGTCTTATTCTTTAAGAAATAAATTTCATAAGGCTATCACTGCCATGGATAGTGATTCTTCTGATATATCAGAGCAAAGTAAATTGAAAACCACCTGGAAAGGATTTACTATTCTAGATGTCACTGAGAAGATTTGTGATTCATGGAAGGAGTCAAAGTATCAACATTAACAG GQHIPVLFSIFCGLLVAVSYHLSRQSSDPSVLFSLVQSKIFPKTEEKNPEDPLSEVKDPLPEKLRNSV|ssdedvpgy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15846 FCHSD2::UVRAG ENSG00000137478.15::ENSG00000198382.9 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE TRUE 1542 FALSE NA FALSE NA FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72984088:- chr11:72547790-72853363:- chr11:72695133:- UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76065710:+ chr11:75526255-75855276:+ chr11:75776754:+ chr11:72924927,chr11:72924903,chr11:72924902,chr11:72924876,chr11:72924864 chr11:76059631,chr11:76059631,chr11:76059631,chr11:76059631,chr11:76059631 NA NA chr11:72635972,chr11:72635948,chr11:72635947,chr11:72635921,chr11:72635909 chr11:75770675,chr11:75770675,chr11:75770675,chr11:75770675,chr11:75770675 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)|Vacuolar_sorting_38_and_autophagy-related_subunit_14(18%) FCH(100%)|ATG14(24%),VPS38(16%) 7 7 7 97 91 ENST00000409418.9 ENST00000356136.8 upstream upstream mismappers(1),mismatches(1) CTGACATCGAGGCAAA___ATCTAAACTTAGTCTTTTTCAATCAAGAATCAGTTTACAGAAGGCAAGTGTAAAG___TTAAAAGCCCGGCGATCTGAGTGTAATTCCAAAGCTACCCACGCAAGGAATGATTATCTTCTTACCCTAGCGGCAGCAAATGCACATCAGGATCGCTACTATCAAACAGATTTAGTTAACATTATGAAG|GTTTCCACTGTATCCAAAAGGAGGGGAGAAGTTGCAGTTTGATTATGGTGTCTATCTTCTGAACAAAAATATAGCACAG___CTAAGATATCAACATGGACTAGGGACTCCAGACTTGCGGCAAACCCTTCCCAACCTGAAAAACTTCATGGAGCATGGACTAATGGTCAGGTG___TGACAGACATCACACCTCCAGTGCAATCCCTGTTCCTAAGAGACAAAGCTCCATATTTGGGGGTGCAGATGTAGGCTTCTCTGGGGGGATCCCTTCACCAGACAAAGGACATCGAAAAC DIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMK|vstvskrrgevav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15847 FBXW7::FHIP1A ENSG00000109670.17::ENSG00000164142.16 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXW7 ENSG00000109670.17 protein_coding - - chr4:152320544-152536092:- chr4:152534941:- chr4:153241696-153457244:- chr4:153456093:- FHIP1A ENSG00000164142.16 protein_coding + - chr4:151409176-151670503:+ chr4:151444307:- chr4:152330328-152591655:+ chr4:152365459:- chr4:152493418 chr4:151452694 NA NA chr4:153414570 chr4:152373846 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 3 5 11 64 15 ENST00000281708.10 unknown upstream downstream duplicates(2),mismatches(1) CAAACCTGACTGTCCCGGGAGAAGTGGCCCTGGACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAG___TACCGCGCCGGAGCCTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTcTCTAAAAGT|AACAACCTGATGTGGCTTCCATTTCAAGATGCCTGACCGCCTGCATGTCCCTCCTGAGTCCCTAATGCAGGGAGAAACATCAAAGAACAAAATGGGAGAATTCCATACTATTGAAAAGAGCTCATTGGAAGGAAACTTTAAATGG___TAAAAAACAAATTCTGCAAGATTTATTTCGACCATGGAGGATGAAAAGCACAAAGATGAAGTGAATGACTTAAGAAGGTAAA...CAAAACTGAAACATCCTTACTTCATGAAGAGAGGCTTTGTGAAAGATTTTAACAGAAACAGCAAAACCCACACATCCAGAGGAGCATTAGCCTCTTCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila) 1 Yes colorectal, endometrial, T-ALL epithelial, leukaemia_lymphoma TSG missense, nonsense, large_deletion, frameshift FALSE NA NA NA NA NA NA NA NA NA 15850 FAR2::TMTC1 ENSG00000064763.12::ENSG00000133687.16 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAR2 ENSG00000064763.12 protein_coding + + chr12:29149016-29341121:+ chr12:29149407:+ chr12:29301949-29494054:+ chr12:29302340:+ TMTC1 ENSG00000133687.16 protein_coding - + chr12:29500840-29784759:- chr12:29595774:+ chr12:29653773-29937692:- chr12:29748707:+ chr12:29163682,chr12:29163676 chr12:29545028,chr12:29545019 NA NA chr12:29316615,chr12:29316609 chr12:29697961,chr12:29697952 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 5 4 2 79 19 ENST00000686419.1 unknown downstream upstream mismatches(3) CCCCGGGCTGAGGCTGCCGCCGGTTTCGCGCCCAGTGCCGAGGCAGCGGCGGAGCCGGGGAAGGTCGGAGGGAGGGTGGTTTCCTCCCGCCCCACACCCAGTCTCCGAGCCGGATATATAGAGTGTCACGTTTGGGAGCCGAAAGACTGGAGCCGTTTCCTTGTGGCTGGAGCGCTTCCCGTAGCCTCGGGGAAGGAGCAGGATTTAGAGGACCACTAGTTGGACCCCATCCTCGTGCTGGAGGAACAG|GTTAATAAACCAGCAGAGAGTCTTTGACTGTTGGACACTAAGGCTTTGTCCCACTGAGGACTGAAGACGTGGAAAGGAATAGCATGAGAGGAAAACAGGAAAGCTTGACAGACTCAGCTTTCTTTTACACTGTG___CAACTCCAAAGAAGCATACAAATACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15858 SUMF1::ITPR1 ENSG00000144455.14::ENSG00000150995.21 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4410865:- chr3:3742498-4508957:- chr3:4452549:- ITPR1 ENSG00000150995.21 protein_coding + - chr3:4493345-4847506:+ chr3:4792678:- chr3:4535029-4889190:+ chr3:4834362:- chr3:4393756 chr3:4798744 NA NA chr3:4435440 chr3:4840428 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Sulfatase-modifying_factor_enzyme_1(82%)| FGE-sulfatase(14%)| 0 1 4 298 2 ENST00000448413.5 unknown upstream downstream none CTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA|CTCTGAGGAAATCATCTGCCATGTCATGAGGATGCTGAAGCAGACCTATGGAGAGGTCCGTGTGGAGGGGACCTGAGGC...ACGTAAGAGCACCAAGGAGCGGACCCTGTAGGTCCACTTAAGCCTTCAAATGATGGCAGCCCTGGCTGACATCCTGGCTACAACCCCATGAGAGACCTGAGCCAGAACCATCCAGAGGAGCCACTCCCAAGTTCCTGACCCCAAGAAAC PNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNP|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15859 USP33::CEP164P1 ENSG00000077254.14::ENSG00000226937.9 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77736056:- chr1:78161672-78225537:- chr1:78201741:- CEP164P1 ENSG00000226937.9 transcribed_processed_pseudogene - + chr10:45002222-45076066:- chr10:45034874:+ chr10:45497670-45571514:- chr10:45530322:+ chr1:77733523,chr1:77733445,chr1:77733525 chr10:45027491,chr10:45027491,chr10:45027489 NA NA chr1:78199208,chr1:78199130,chr1:78199210 chr10:45522939,chr10:45522939,chr10:45522937 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| zf-UBP(100%)| 2 0 3 194 6 ENST00000370794.7 unknown upstream upstream none GTAGATCACAGCACCATACATTCTCAG___GAGACAAAGCATTATCTAACTGTGAACCTTACCACTCTTCGAGTATGGTGTTATGCTTGCAGCAAAGAAGTATT...AGACAACCTCACCAAATACAAGAAAACAGTGTCCAG___GATTTTAAAATACCCAGTAATACAACATTAAAAACTCCTCTGGTTGCCGTATTTGATGATCTGGATATAGAAGCGGATGAAGAAGATGAACTTAGGGCCAGAG|AGAGAGCTCCTCCAACTGTAAGACATTTGCTTTCCCCCAACCTCATTTACTGAGAAGATGTGAATTGGAGGATGACCTATG RQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEADEEDELRAR|erapptvrhllspnliy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15860 USP33::ENSG00000277757 ENSG00000077254.14::ENSG00000277757.4 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77736056:- chr1:78161672-78225537:- chr1:78201741:- ENSG00000277757 ENSG00000277757.4 lncRNA - + chr10:45016080-45147221:- chr10:45034874:+ chr10:45511528-45642669:- chr10:45530322:+ chr1:77733523,chr1:77733445,chr1:77733525 chr10:45027491,chr10:45027491,chr10:45027489 NA NA chr1:78199208,chr1:78199130,chr1:78199210 chr10:45522939,chr10:45522939,chr10:45522937 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| zf-UBP(100%)| 2 0 3 194 6 ENST00000370794.7 unknown upstream upstream none GTAGATCACAGCACCATACATTCTCAG___GAGACAAAGCATTATCTAACTGTGAACCTTACCACTCTTCGAGTATGGTGTTATGCTTGCAGCAAAGAAGTATT...AGACAACCTCACCAAATACAAGAAAACAGTGTCCAG___GATTTTAAAATACCCAGTAATACAACATTAAAAACTCCTCTGGTTGCCGTATTTGATGATCTGGATATAGAAGCGGATGAAGAAGATGAACTTAGGGCCAGAG|AGAGAGCTCCTCCAACTGTAAGACATTTGCTTTCCCCCAACCTCATTTACTGAGAAGATGTGAATTGGAGGATGACCTATG RQPHQIQENSVQDFKIPSNTTLKTPLVAVFDDLDIEADEEDELRAR|erapptvrhllspnliy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15861 TANC2::KANK2 ENSG00000170921.16::ENSG00000197256.11 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63319090:+ chr17:61043596-61505064:+ chr17:61396451:+ KANK2 ENSG00000197256.11 protein_coding - - chr19:11164270-11197791:- chr19:11176817:- chr19:11274946-11308467:- chr19:11287493:- chr17:63334270,chr17:63334269 chr19:11177669,chr19:11177670 NA NA chr17:61411631,chr17:61411630 chr19:11288345,chr19:11288346 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%) FLYWCH_u(100%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%) 2 3 0 69 152 ENST00000689528.1 ENST00000586659.6 downstream downstream none GTGGATGCCAACAGAGAGCTGCCACTCACACAGCCACCTTCAGCCCACTCATCTATCACCAGTGGAAGCTGCCCAGGAACTCCGGAAATGCGCAGGCGGCAGGAGGAGGCTATGCGAAGACTAGCCTCGCAG|GTATGAGTCGTCATCCGAGGACTCCAGCACAGCAGAGAACATCTCAGACAACGACAGCACAGAGAACGAGGCCCCAGAGCCGAGGGAGAGGGTTCCGAGTGTGGCCGAAGCCCCCCAGCTCAGGC...GGGCATCAGGATCAAACACGGAGGAGGAGATCAG___GATGGAGCTAAGCCCTGACCTCATCTCAGCCTGCTTGGCCCTGGAAAAGTACCTGGACAATCCCAAC VDANRELPLTQPPSAHSSITSGSCPGTPEMRRRQEEAMRRLASQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15863 AIG1::LINC01277 ENSG00000146416.19::ENSG00000229017.7 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AIG1 ENSG00000146416.19 protein_coding + + chr6:143060496-143341058:+ chr6:143061066:+ chr6:143381633-143662195:+ chr6:143382203:+ LINC01277 ENSG00000229017.7 lncRNA - + chr6:142966293-143059682:- chr6:143007875:+ chr6:143287430-143380819:- chr6:143329012:+ chr6:143073395,chr6:143073586,chr6:143073396 chr6:142998303,chr6:142997892,chr6:142998301 NA NA chr6:143394532,chr6:143394723,chr6:143394533 chr6:143319440,chr6:143319029,chr6:143319438 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none FAR-17a/AIG1-like_protein(16%)| Far-17a_AIG1(0%)| 3 1 0 330 8 ENST00000357847.9 unknown downstream upstream none CGGATGGCAATCCTGCTGTCTTACTGCTCTATCCTGTGTAACTACAAGGCCATCGAAATGCCCTCACACCAGACCTACGGAGGGAGCTGGAAATTCCTGACGTTCATTGATCTG|CCACGAGGAGCAGATAGATGATTGAAGAAACACGAGGTTGAGGAACTTGCCCAAGAACACAGAACTGCATTGAAG...GAATGTTGAAAACATATTAAGCCACTAGTATTCAACGTCAAGGGTGTTATTGGACTGTTATGGAAACGCCCTGGACTATTAAGATAACTATTTAAGAAAAG RMAILLSYCSILCNYKAIEMPSHQTYGGSWKFLTFIDL|prgadr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15864 MAP3K7CL::GNAO1-DT ENSG00000156265.17::ENSG00000246379.8 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP3K7CL ENSG00000156265.17 protein_coding + + chr21:29077221-29175889:+ chr21:29133414:+ chr21:30449542-30548210:+ chr21:30505735:+ GNAO1-DT ENSG00000246379.8 lncRNA - + chr16:55984009-56191118:- chr16:56043400:+ chr16:56017921-56225030:- chr16:56077312:+ chr21:29141834,chr21:29141831 chr16:56023006,chr16:56023000 NA NA chr21:30514155,chr21:30514152 chr16:56056918,chr16:56056912 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 0 1 8 0 ENST00000339024.8 unknown downstream upstream none GAAGACCACCTGGGCCTGACTGAAGATGCTTGTTTCTTCCTCTTCCCTAACGCCCTTTCCACCAGTGCGGACTGCAG___ATTGTCAGTGGCTGCTATGCAGCA...CGCCTTTAGCCTCAATGACGCCTCAG|GTGGACTTGAGATCCAAGTTGGCTTGAGGCCTGCCCTTCAACCATCCTCAGTCATCCAGGTGAAGCACATGTCCT AFSLNDAS|ggleiqvglrpalqpssviqvkhms NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15865 ENSG00000289720::ITCH ENSG00000289720.1::ENSG00000078747.17 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34457474:+ chr20:32951077-33128727:+ chr20:33045279:+ ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34438474:+ chr20:32951041-33099578:+ chr20:33026279:+ chr20:34459504,chr20:34459503 chr20:34436172,chr20:34436164 NA NA chr20:33047309,chr20:33047308 chr20:33023977,chr20:33023969 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |HECT-domain_(ubiquitin-transferase)(100%),WW_domain(100%) C2(100%),WW(99%)|HECT(100%),WW(100%) 29 21 8 399 255 ENST00000696979.1 ENST00000374864.10 downstream upstream duplicates(1),mismatches(4) ACCAGAGATTCATTTATGGG___AATCAAGATTTATTTGCTACATCACAAAGTAAAGAATTTGATCCTCTTGGTCCATTGCCACCTGGATGGG___AGAAGAGAACAGACAGCAATGGCAGAGTATATTTCGTCAACCACAACACACGAATTACACAATGGGAAGACCCCAGAAGTCAAGG|AGTGAGCACAAATGGATCAGATGACCCTGAAGATGCAGGAGCTGGTGAAAATAGGAGAGTCAGTGGGAATAATTCTCCATCACTCTCAAATGGTGGTTTTAAACCTTCTAGACCTCCAAGACCTTCACGACCACCACCACCCACCCCACGTAGACCAG___CATCTGTCAATGGTTCACCATCTG QRFIYGNQDLFATSQSKEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQg|VSTNGSDDPEDAGAGENRRVSGNNSPSLSNGGFKPSRPPRPSRPPPPTPRRPASVNGSPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-644a chr20:34466325-34466418:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15866 EZR::SYTL3 ENSG00000092820.19::ENSG00000164674.17 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EZR ENSG00000092820.19 protein_coding - - chr6:158765741-158819368:- chr6:158818082:- chr6:159186773-159240400:- chr6:159239114:- SYTL3 ENSG00000164674.17 protein_coding + - chr6:158650014-158764876:+ chr6:158752169:- chr6:159071046-159185908:+ chr6:159173201:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none none none 15 6 6 12323 48 ENST00000367075.4 unknown upstream downstream mismatches(1) CGGAGCACTGCAGGCGCCGG___GTTGGGACAGCGTCTTCGCTGCTGCTGGATAGTCGTGTTTTCGGGGATCGAGGATACTCACCAGAAACCGAAAATGCCGAAACCA|AGCTGCGAAGAAACATATAGGTGTCTGTATTATATCTAACTGAGTCAAGAGTTTGAAAGCACCATCCACTGGACTCTGCCCCAGGCGCTCCACCCGGGCTCGGGAGGACTCTGCACAGGAATATCTGTCCAGCAAGTACCTTCAAGGTCTCCTGAAAGGTCGGGTCCACGGTGTTCCTTTGGACTCCAGTCTTGCGCTTTCCCTGGGAGGATCTGTCGG MPKP|sceetyrclyyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ezrin 1 Yes NSCLC epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 15867 GDI2::TASOR2 ENSG00000057608.17::ENSG00000108021.22 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GDI2 ENSG00000057608.17 protein_coding - - chr10:5765223-5842132:- chr10:5794885:- chr10:5807186-5884095:- chr10:5836848:- TASOR2 ENSG00000108021.22 protein_coding + - chr10:5684731-5763779:+ chr10:5685866:- chr10:5726694-5805742:+ chr10:5727829:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none GDP_dissociation_inhibitor(29%)| GDI(44%)| 4 4 3 2536 22 ENST00000380127.5 unknown upstream downstream mismatches(1) GATCACCACCCGAGTCAATGGGGAGAGGAAGAGACTGGAATGTTGACTTGATTCCCAAGTTCCTTATGGCTAATG___GTCAGCTGGTTAAGATGCTGCTTTATACAGAGGTAACTCGCTATCTGGATTTTAAAGTGACTGAAGGGAGCTTTGTCTATAAGGGTGGAAAAATCTACAAGGTTCCTTCCACTGAAGCAGAAGCCCTGGCATCTA|GGAGAATAAGGAAGAGTAAGCGTGGTTTGTTTAAAGTTACAGATTTCAAATAGACAAGAAGCGACTAAGAGAAACTTGAGAATTCCCAAAGTAATCTTCCTCAAAATTTCAGTCATCAACCCAGTTCTCCCACGAAACGCTGCTTGGCGCCGCCTTCAGACAAACTTCTGTGTTGCTCGCACCAAGTTATCCCAACGCGGCTTGCGCTTGCTGCTGAAATGACCCTCCCTTCGGAGAGACCTGTTTTACCCTAAAAAGAAAAGGTGGCG SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALAS|rrirkskrglfkvtdfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15868 SEPTIN11::ENSG00000248656 ENSG00000138758.12::ENSG00000248656.3 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEPTIN11 ENSG00000138758.12 protein_coding + + chr4:76949751-77040384:+ chr4:77020670:+ chr4:77870904-77961537:+ chr4:77941823:+ ENSG00000248656 ENSG00000248656.3 lncRNA + + chr4:111516117-111739871:+ chr4:111618505:+ chr4:112437273-112661027:+ chr4:112539661:+ chr4:77026028,chr4:77026026 chr4:111570784,chr4:111570778 NA NA chr4:77947181,chr4:77947179 chr4:112491940,chr4:112491934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Septin(100%)| MMR_HSR1(100%),Septin(100%)| 0 3 0 1103 4 ENST00000505788.5 ENST00000681880.1 downstream upstream mismatches(1) CTCACACCCGCCACTATGAATTGTACCGACGCTGTAAGCTTGAAGAGATGGGGTTCAAGGACACTGACCCTGACAGCAAACCCTTCAG|GAAAAAGAGAACAGCGAGGAGAAAAGGATAATAGAGGAAAAGAGCAGAAAGAAGCCATTTATATCTGACTGCTGCTGTGGGAGTTACAGAATCTCCTTCTTCAACTTGGGCCCTTTGCAG___GTTTTGGTATCAGCATGAaGTTGGCCTCATAAAATGAGTTACAG...ATTCAGGCTGCCCCTGCTGAATTTTAGAGAGCGTCAAAACTTATTGGTTAAAGGGATGCCTTTATGAGTAAAACATGAGAAATATTCACTTACTGTAAG...TAAGAAAACCGAAGtCtGGCAGAACAGAGACTTTTCAGGGTGCGAAGTTACGCATGGTGCCCTCTACTGGAGagACTtGTAAAGAGTTTTGATTTCAAAAA HTRHYELYRRCKLEEMGFKDTDPDSKPFr|kkrtarrkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15878 EHD4::UHRF1 ENSG00000103966.11::ENSG00000276043.5 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2769 TRUE 1064 EHD4 ENSG00000103966.11 protein_coding - - chr15:41895933-41972557:- chr15:41919210:- chr15:42188131-42264755:- chr15:42211408:- UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4910876:+ chr19:4903092-4962165:+ chr19:4910888:+ chr15:41916253,chr15:41916260 chr19:4903394,chr19:4903387 NA NA chr15:42208451,chr15:42208458 chr19:4903406,chr19:4903399 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Domain_of_unknown_function_(DUF5600)(16%),Dynamin_family(100%),N-terminal_EH-domain_containing_protein(100%)|PHD-finger(100%),SAD/SRA_domain(100%),Tandem_tudor_domain_within_UHRF1(100%),Ubiquitin_family(100%) DUF5600(0%),Dynamin_N(100%),EHD_N(100%),MMR_HSR1(100%)|PHD(100%),SAD_SRA(100%),TTD(100%),ubiquitin(100%) 5 0 1 298 988 ENST00000220325.9 ENST00000620565.4 upstream upstream mismatches(1) GAATTCTCAGAGGCCATCAAGGCCTTCCGGGGCCAGGACGACAAGATCCGTGTCGTGCTGAACAAGGCCGACCAAGTGGACACGCAGCAGCTGATGCGGGTCTACGGGGCCCTCATGTGGTCCCTAGGCAAGGTCATCAACACGCCCGAGGTACTGCGCGTCTACATTGGCTCCTTCTGGGCGCAGCCCCTGCAGAACACGGACAACCGCCGGCTCTTCGAGGCTGAGGCCCAGGACCTCTTTAGAGACATCCAGAGCCTCCCCCAGAAGGCAGCGGTGCGCAAGCTCAACGACCTCATCAAGCGAGCGAGGCTGGCCAAG|CGCCGACACCATGTGGATCCAGGTTCGGACCATGGACGGGAGGCAGACCCACACGGTGGACTCGCTGTCCAGGCTGACCAAGGTGGAGGAGCTGAGGCGGAAGATCCAGGAGCTGTTCCACGTGGAGCCAGGCCTGCAGAGGCTcTTCTACcGtGGCAAACAG EFSEAIKAFRGQDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVINTPEVLRVYIGSFWAQPLQNTDNRRLFEAEAQDLFRDIQSLPQKAAVRKLNDLIKRARLAK|rrhhvdpgsdhgreadphgglavqadqgggaeaedpgavprgarpaeallpwqt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4747 chr19:4932687-4932740:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15879 EHD4::UHRF1 ENSG00000103966.11::ENSG00000276043.5 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2769 TRUE 1064 EHD4 ENSG00000103966.11 protein_coding - - chr15:41895933-41972557:- chr15:41919210:- chr15:42188131-42264755:- chr15:42211408:- UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4929222:+ chr19:4903092-4962165:+ chr19:4929234:+ chr15:41916253,chr15:41916260 chr19:4903394,chr19:4903387 NA NA chr15:42208451,chr15:42208458 chr19:4903406,chr19:4903399 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Domain_of_unknown_function_(DUF5600)(16%),Dynamin_family(100%),N-terminal_EH-domain_containing_protein(100%)|PHD-finger(100%),SAD/SRA_domain(100%),Tandem_tudor_domain_within_UHRF1(100%),Ubiquitin_family(32%) DUF5600(0%),Dynamin_N(100%),EHD_N(100%),MMR_HSR1(100%)|PHD(100%),SAD_SRA(100%),TTD(100%),ubiquitin(0%) 0 0 0 298 1109 ENST00000220325.9 ENST00000612630.4 upstream upstream mismatches(1) GCAAGCTCAACGACCTCATCAAGCGAGCGAGGCTGGCCAAG|ATGGAGGACGGCCATACCCTCTTCGACTACGAGGTCCGCCTGAATGACACCATCCAGCTC...CCGACcCgGGCgGCTGCCTGGGCCAGAGTGAGTCAGACAAGTCCcCCcCCCcCGGcGAGGCGcCCGCCGAGACTGACAGCAGGCCAGCCGATGAGGACATG KLNDLIKRARLAK|MEDGHTLFDYEVRLNDTIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4747 chr19:4932687-4932740:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15880 TRAPPC9::PTK2 ENSG00000167632.18::ENSG00000169398.20 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140397620:- chr8:140739968-141468678:- chr8:141407719:- PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140659678:- chr8:141667999-142012315:- chr8:141669777:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(24%)|Focal_adhesion_targeting_region(47%) TRAPPC9-Trs120(9%)|Focal_AT(2%) 1 1 4 158 2082 ENST00000648948.2 ENST00000696786.1 upstream downstream duplicates(1) GCGATTTCCTATTACAGCAAG___TATAAGAATGCGGGAGTGATTGAGTTGGAAGCGTGCATCAAGGCTGTACGTGTCCTTGCAATTCAGAAACGGAGCATGGAAGCATCAGAATTTCTTCAGAATGCAGTTTACATTAACCTTCGACAG|ATTGAGATGGCACAGAAGCTATTGAACTCTGACCTGGGTGAGCTCATCAACAAGATGAAACTGGCCCAGCAGTATGTCATGACCAGCCTCCAGCAAGAGTACAAAAAGCAAATGCTGACTGCTGCTCACGCCCTGGCTGTGGATGCCAAAAACTTACTCGATGTCATTGACCAAGCAAGACTGAAAATGCTTGGGCAGACGAGACCACACTGAGCCTCCCCTAGGAGCACGTCTTGCTACCCTCTTTTGAAGATGTTCTCTAGCCTTCCACCAGCAGCGAG AISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQ|IEMAQKLLNSDLGELINKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDVIDQARLKMLGQTRPH* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 141415676 FALSE 141696793 FALSE YES In-frame TRUE Esophagus OESOPHAGUS no_match 140295664|140275658 FALSE|FALSE 140668402|140717709 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15881 FAF1::EPS15 ENSG00000185104.21::ENSG00000085832.18 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAF1 ENSG00000185104.21 protein_coding - - chr1:50437028-50960267:- chr1:50959767:- chr1:50902700-51425939:- chr1:51425439:- EPS15 ENSG00000085832.18 protein_coding - - chr1:51354263-51519328:- chr1:51481314:- chr1:51819935-51985000:- chr1:51946986:- chr1:50893533 chr1:51503373 NA NA chr1:51359205 chr1:51969045 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none UBA-like_domain(15%)|Cytoskeletal-regulatory_complex_EF_hand(100%) UBA_4(0%)|EF-hand_4(100%),UIM(100%) 0 4 0 281 208 ENST00000396153.7 ENST00000371733.8 upstream downstream none GCCGCGGAACTCGGCGGCCGCCATGGCGTCCAACATGGACCGGGAGATGATCCTGGCGGATTTTCAG|TTATCAAGTGGGAATCCTGTATATGAAAAATACTATAGACAG___GTTGATACAGGCAATACTGGAAGGGTGTTGGCTTCTGATGCTGCTGCTTTCCTGAAAAAATCAGGGCTTCCAGACTTGATACTTGGAAAG___ATTTGGGATTTAGCCGACACAGATGGCAAAGGTATCCT MASNMDREMILADFQ|LSSGNPVYEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILGKIWDLADTDGKGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma,Stomach adenocarcinoma BLADDER,STOMACH no_match 51171458,51323601 FALSE,FALSE 51946986,51946986 TRUE,TRUE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE epidermal growth factor receptor pathway substrate 15 (AF1p) 1 Yes ALL leukaemia_lymphoma TSG, fusion translocation 15889 TANC2::SPC24 ENSG00000170921.16::ENSG00000161888.12 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63151380:+ chr17:61043596-61505064:+ chr17:61228741:+ SPC24 ENSG00000161888.12 protein_coding - - chr19:11131520-11155807:- chr19:11149238:- chr19:11242196-11266483:- chr19:11259914:- chr17:63153544 chr19:11151334 NA NA chr17:61230905 chr19:11262010 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Spc24_subunit_of_Ndc80(100%) |Spc24(100%) 0 1 2 9 444 ENST00000689528.1 ENST00000585567.5 downstream downstream none CTTCCAGTGAGTGAAG___CCCCTCTGAGGAAGGCAAAGTTTGTTGAGAGCCCACGAATTCCAGAATCCGAGCTTGGCTCACCAACCCTCACTTCAGCTCAGAAACTGGACGTGGATGCATACTGCCCTG|AGATCCTCACCATGGAGAAGGAAGTGGCCCAGAGCCTTCTCAATGCGAAGGAGCAGGTGCACCAGGGAGGCGTGGAGCTGCAGCAGCTGGAAGCTGGGCTTCAGGAGGCTGGGGAGGAGGACACCCGTCTGAAGGCCAGCCTCCT___TCAGCTCACCAGAGAGCTGGA LPVSEAPLRKAKFVESPRIPESELGSPTLTSAQKLDVDAYCP|eILTMEKEVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTREL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15900 ITCH::ENSG00000289720 ENSG00000078747.17::ENSG00000289720.1 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34457474:+ chr20:32951041-33099578:+ chr20:33045279:+ ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34438474:+ chr20:32951077-33128727:+ chr20:33026279:+ chr20:34459504,chr20:34459503 chr20:34436172,chr20:34436164 NA NA chr20:33047309,chr20:33047308 chr20:33023977,chr20:33023969 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none C2_domain(100%),WW_domain(75%)| C2(100%),WW(99%)|HECT(100%),Robl_LC7(100%),WW(100%) 29 21 8 399 255 ENST00000374864.10 ENST00000696979.1 downstream upstream duplicates(1),mismatches(4) ACCAGAGATTCATTTATGGG___AATCAAGATTTATTTGCTACATCACAAAGTAAAGAATTTGATCCTCTTGGTCCATTGCCACCTGGATGGG___AGAAGAGAACAGACAGCAATGGCAGAGTATATTTCGTCAACCACAACACACGAATTACACAATGGGAAGACCCCAGAAGTCAAGG|AGTGAGCACAAATGGATCAGATGACCCTGAAGATGCAGGAGCTGGTGAAAATAGGAGAGTCAGTGGGAATAATTCTCCATCACTCTCAAATGGTGGTTTTAAACCTTCTAGACCTCCAAGACCTTCACGACCACCACCACCCACCCCACGTAGACCAG___CATCTGTCAATGGTTCACCATCTG QRFIYGNQDLFATSQSKEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQg|VSTNGSDDPEDAGAGENRRVSGNNSPSLSNGGFKPSRPPRPSRPPPPTPRRPASVNGSPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15901 ENSG00000247853::CHD4 ENSG00000247853.2::ENSG00000111642.16 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000247853 ENSG00000247853.2 lncRNA + + chr12:6578622-6584739:+ chr12:6578721:+ chr12:6687788-6693905:+ chr12:6687887:+ CHD4 ENSG00000111642.16 protein_coding - - chr12:6570082-6614524:- chr12:6573269:- chr12:6679248-6723690:- chr12:6682435:- chr12:6580684,chr12:6580684 chr12:6576648,chr12:6576645 NA NA chr12:6689850,chr12:6689850 chr12:6685814,chr12:6685811 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |CHDCT2_(NUC038)_domain(50%) |CHDCT2(32%) 4 7 2 12 864 ENST00000501075.2 ENST00000643335.1 downstream downstream mismatches(1) ACTGTATGCTACAAGAATCCATCCACCTACACCCCTTCTCCACCTGGGTGTCTCTCAGACCCAGAAAATGGTGCCATTGGCCCACTGACAACTAAATGTGGGGACAG|CTCTTAGAACAAGCTCTGGTGATTGAGGAACAGCTGCGCCGGGCTGCTTACTTGAACATGTCAGAAGACCCTTCTCACCCTTCCATGGCCCTCAACACCCGCTTTGCTGAGGTGGAGTGTTTGGCGGAAAGTCATCAGCACCTGTCCAAGGAGTCAATGGCAGGAAACAAGCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 4 1 Yes uterine serous carcinoma epithelial oncogene missense, frameshift, nonsense 15902 ENSG00000247853::ENSG00000285238 ENSG00000247853.2::ENSG00000285238.2 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000247853 ENSG00000247853.2 lncRNA + + chr12:6578622-6584739:+ chr12:6578721:+ chr12:6687788-6693905:+ chr12:6687887:+ ENSG00000285238 ENSG00000285238.2 protein_coding - - chr12:6556886-6607367:- chr12:6573269:- chr12:6666052-6716533:- chr12:6682435:- chr12:6580684,chr12:6580684 chr12:6576648,chr12:6576645 NA NA chr12:6689850,chr12:6689850 chr12:6685814,chr12:6685811 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site inversion low none none |CHDCT2(32%),Methyltr_RsmB-F(100%),Methyltr_RsmF_N(100%),P120R(100%) 4 7 2 12 864 ENST00000501075.2 ENST00000644480.2 downstream downstream mismatches(1) ACTGTATGCTACAAGAATCCATCCACCTACACCCCTTCTCCACCTGGGTGTCTCTCAGACCCAGAAAATGGTGCCATTGGCCCACTGACAACTAAATGTGGGGACAG|CTCTTAGAACAAGCTCTGGTGATTGAGGAACAGCTGCGCCGGGCTGCTTACTTGAACATGTCAGAAGACCCTTCTCACCCTTCCATGGCCCTCAACACCCGCTTTGCTGAGGTGGAGTGTTTGGCGGAAAGTCATCAGCACCTGTCCAAGGAGTCAATGGCAGGAAACAAGCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15910 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59874539:- chr17:57936840-57970306:- chr17:57951900:- VMP1 ENSG00000062716.13 protein_coding + - chr17:59707192-59842255:+ chr17:59808432:- chr17:57784553-57919616:+ chr17:57885793:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(60%)| 1 0 2 80 1 ENST00000325752.8 unknown upstream downstream none TCGTAACATTCCTCACATGTCTGAGAATTCATTGGCATACACCACATTTACTTGGGCTGGCCTCCTCAAGCATTTGAGACAGATGCTCATTTCTAATGCAAAGATGGAAGAAG|ACTTCATGAATACATCTCTG RNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEE|dfmnts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15914 PTPRG::FHIT ENSG00000144724.20::ENSG00000189283.11 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2774 TRUE 1065 PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:62078258:+ chr3:61547243-62283284:+ chr3:62063932:+ FHIT ENSG00000189283.11 protein_coding - + chr3:59747277-61251459:- chr3:61163899:+ chr3:59733003-61237133:- chr3:61149572:+ chr3:62094153 chr3:61158915 NA NA chr3:62079827 chr3:61144588 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none Eukaryotic-type_carbonic_anhydrase(56%)| Carb_anhydrase(49%)| 1 0 1 23 0 ENST00000474889.6 unknown downstream upstream none GACGACTATTTTGTCAGTGGAGCTGGTCTACCTGGCAGATTCAAAGCTGAGAAGGTGGAATTTCACTGGGGCCACAGCAATGGCTCAGCGGGCTCTGAACACAGCATCAATGGCAGGAGGTTTCCTGTTGAG___ATGCAGATTTTCTTTTACAATCCAGATGACTTTGACAGCTTTCAAACCGC...TAATCGGAGCCATGGCCATATTTTTTCAA|GGGCCTCAGCCATTAACCTGGCAATGGAAAAGAAAAATATTTTCTTCTCCCTTGCAGTTGCGTACATCAGCA...GGATCAGTGAACAAATTGGGCTATGAATATTCCTATTATAAATCAGAAAAACAGATCTAGACCAAAGCTGACCAAAGGAGAAGGAAAAGGAGAGACTGCAT IGAMAIFFQ|gpqpltwqwkrkifssplqlrts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15915 PTPRG::FHIT ENSG00000144724.20::ENSG00000189283.11 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 2774 TRUE 1065 PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:62003497:+ chr3:61547243-62283284:+ chr3:61989171:+ FHIT ENSG00000189283.11 protein_coding - - chr3:59747277-61251459:- chr3:59752321:- chr3:59733003-61237133:- chr3:59738047:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Eukaryotic-type_carbonic_anhydrase(43%)| Carb_anhydrase(7%)| 0 1 0 36 53 ENST00000474889.6 ENST00000492590.6 downstream downstream none GGCTCAGCGGGCTCTGAACACAGCATCAATGGCAGGAGGTTTCCTGTTGAG|CTCCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCAGAAGCCGCAGCTC GSAGSEHSINGRRFPVE|LQKHDKEDFPASWRSEEEMAAEAAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Skin Cutaneous Melanoma,Breast invasive carcinoma,Liver hepatocellular carcinoma,Prostate adenocarcinoma SKIN,BREAST,LIVER,PROSTATE no_match 61734656,62063932,61734656|61548046,61734656 FALSE,FALSE,FALSE|FALSE,FALSE 60522712,59908140,60807705|60522712,60522712 FALSE,FALSE,FALSE|FALSE,FALSE PARTIALLY,YES,PARTIALLY,YES CDS-5UTR,In-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fragile histidine triad gene 1 Yes pleomorphic salivary gland adenoma epithelial TSG, fusion translocation 15919 MTMR2::MAML2 ENSG00000087053.20::ENSG00000184384.15 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MTMR2 ENSG00000087053.20 protein_coding - - chr11:95821766-95925315:- chr11:95914242:- chr11:95554930-95658479:- chr11:95647406:- MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:95985642:- chr11:95709762-96076359:- chr11:95718806:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 2 0 122 85 ENST00000393223.8 ENST00000524717.6 upstream downstream none AACATCTCAAAAATTATAAT|GAGAAAATTGCTCCACAAGATCAGATAAACCGACATTTGTCAAGGCCACCTCCAGATTATAAAGACCAAAGAAGAAATGTGGGCAATATGCAACCAACTGCTCAGTATTCTG___GTGGCTCATCCACAATAAGCTTAAACTCTAACCAGGCTTTGGCAAcCCCAGTTTCAACACACACCATTTTAACTCCCAATTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,BREAST,CENTRAL_NERVOUS_SYSTEM no_match 95657039,95598765,95621320|95620776 FALSE,FALSE,FALSE|FALSE 95724887,95724887,95826681|95724887 FALSE,FALSE,FALSE|FALSE YES,YES,PARTIALLY Out-of-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 15927 ACSL4::DCX ENSG00000068366.21::ENSG00000077279.21 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACSL4 ENSG00000068366.21 protein_coding - - chrX:109624244-109733403:- chrX:109629237:- chrX:108867473-108976632:- chrX:108872466:- DCX ENSG00000077279.21 protein_coding - - chrX:111293779-111412429:- chrX:111410420:- chrX:110537007-110655657:- chrX:110653648:- chrX:109626769,chrX:109626774 chrX:111410863,chrX:111410865 NA NA chrX:108869998,chrX:108870003 chrX:110654091,chrX:110654093 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none AMP-binding_enzyme(100%)|Doublecortin(100%) AMP-binding(100%)|DCX(100%) 1 0 0 3 1 ENST00000439581.1 ENST00000358070.10 upstream downstream none CCTCAATTGTACTTTTAAAACAAACTTGGCATGGAAGAGAACCTTTCCCGAGACTCTTTGAAAGTCTAAATACATGATTGTAAATTACTTCCCTTTGTCAA...CCCTTGATTACCATTTTGGAAATGAGTTCCAGGTGATGGATAAACAGATGATTATTTGACAG|GTCTCTGAGGTTCCACCAAAATATGGAACTTGATTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15938 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE TRUE 1544 TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177098466:- chr3:176737128-176945788:- chr3:176816254:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 174 285 300 914 778 ENST00000457928.7 ENST00000652470.1 upstream downstream duplicates(125),low_entropy(1),mismatches(27),multimappers(19) GAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG___CATCAACAACAGCAACTTGTGATTGGCGGTGACCGGATATTCAGTTGCACATCCCCACATCAATGCACTGCCAATG|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACCAACCCTCTTCCTAGCTCCTCCATAATTCCTTTTTTTCCTGCACGTGATTACAGTGAGATGCTAGATCCCTCATTCAGCTACCTGCTGCCTGTTGACCAGCTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15939 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177131363:- chr3:176737128-176945788:- chr3:176849151:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 4 9 53 106 778 ENST00000704384.1 ENST00000652470.1 upstream downstream duplicates(7),mismatches(3),multimappers(1) ATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG___GTGTGGGAATAAGTATCTTTGGAAGACCAGGCACTTTATGCAGTATTGAGCTCAGGAGGCAGTGAGTGTTAAGGAATGGGTGTAAAA|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15940 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177197121:- chr3:176737128-176945788:- chr3:176914909:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 4 29 13 425 778 ENST00000457928.7 ENST00000652470.1 upstream downstream duplicates(1),mismatches(2) CTGGGGTTATAATTGCCTCTCACCCCCCGGAGGGGTTATTTTGGGGGTGGTTGGAGGCGGTGGCGGCGGCGGCGAGGAGGGGAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACCAACCCTCTTCCTAGCTCCTCCATAATTCCTTTTTTTCCTGCACGTGATTACAGTGAGATGCTAGATCCCTCATTCAGCTACCTGCTGCCTGTTGACCAGCTCCTCTTCCTCTCCCCCGGCCCTGGTTCTTCTTCCAAGCTATTAGGTGAAAGCAAAAGTAATTGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15941 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177160871:- chr3:176737128-176945788:- chr3:176878659:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 3 2 39 91 778 ENST00000422066.6 ENST00000652470.1 upstream downstream duplicates(4),mismatches(3),multimappers(1) TTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG___AGTTTCACTCTGTCACCCAGGCTCGAGTGCAGTGGCGTGTTCTCGGCTCACTACAACCTCCGTCCTCTGGGCTCAAGCAGTCCTCGCATCcCAGCCTCCCAAGGAGCTGGGACCTCAG|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15942 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177196340:- chr3:176737128-176945788:- chr3:176914128:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 1 6 20 148 778 ENST00000704385.1 ENST00000652470.1 upstream downstream duplicates(1),mismatches(2) CGCGCGGCAGCCGGGCCTTGCTCCGGGACGTGTTTATTTGTAACTTAGTGCTTTTTATCGTCTTAAGGAGGTATTTGGTGGAGGCTCTTTGAAGTTGGGTTCAGGAGTGTAGAATTGGCAAAGTTATTGCCAGCTTCCTG|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACCAACCCTCTTCCTAGCTCCTCCATAATTCCTTTTTTTCCTGCACGTGATTACAGTGAGATGCTAGATCCCTCATTCAGCTACCTGCTGCCTGTTGACCAGCTCCTCTTCCTCTCCCCCGGCCCTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15943 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 2780 TRUE 1066 TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177098466:- chr3:176737128-176945788:- chr3:176816254:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176418525:- chr3:176133227-176585626:- chr3:176136313:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 0 2 178 914 1258 ENST00000457928.7 ENST00000652470.1 upstream downstream duplicates(20),mismatches(12),multimappers(1) GGGGAATTTCCTTGTGCCTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG___CATCAACAACAGCAACTTGTGATTGGCGGTGACCGGATATTCAGTTGCACATCCCCACATCAATGCACTGCCAATG|GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACCAACCCTCTTCCTAGCTCCTCCATAATTCCTTTTTTTCCTGCACGTGATTACAGTGAGATGCTAGATCCCTCATTCAGCTACCTGCTGCCTGTTGACCAGCTCCTCTTCCTCTCCCCCGGCCCTGGTTCTTCTTCCAAGCTATTAGGTGAAAGCAAAAGTAATTGCGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15949 CEBPZOS::EIF2AK2 ENSG00000218739.10::ENSG00000055332.19 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEBPZOS ENSG00000218739.10 protein_coding + + chr2:37196488-37216193:+ chr2:37201726:+ chr2:37423631-37443336:+ chr2:37428869:+ EIF2AK2 ENSG00000055332.19 protein_coding - + chr2:37099210-37157522:- chr2:37118653:+ chr2:37326353-37384665:- chr2:37345796:+ chr2:37207328,chr2:37207327 chr2:37117384,chr2:37117380 NA NA chr2:37434471,chr2:37434470 chr2:37344527,chr2:37344523 NA NA sense antisense stop-codon 3'UTR/splice-site intron duplication/5'-5' high none none none 10 4 6 425 6 ENST00000397064.6 unknown downstream upstream none CCTCAG___GATGGCCCGTACTTTGGAACCACTAGCAAAGAAGATCTTTAAAGGAGTTTTGGTAGCCGAACTTGTAGGCGTTTTTGGAGCATATTTTTTGTTTAGCAAGATGCACACAAGCCAAG___ATTTCAGGCAAACAATGAGCAAGAAATATCCCTTCATCTTGGAAG___TTTATTACAAATCCACTGAGAAGTCTGGAATGTATGGAATCAGAGAGCTAGATCAAAAAACATGGTTGAACAGCAAAAATTAGAT|TTCTGACAATGTTCCACCTTCAAAGAACAACTTCAGATATTGTAGAAGAGACATATTGGAACCAGACAGACTCAAAACACCAATGCATCAGACATCCAGCCCCTGGGCAGACCACGGAAGCAATACCTTTTAAGGGCTACTCATTCCTCTCTGAGCCCAATAAACAACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15950 EIF2AK2::CEBPZ ENSG00000055332.19::ENSG00000115816.15 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE TRUE 1546 FALSE NA FALSE NA EIF2AK2 ENSG00000055332.19 protein_coding - - chr2:37099210-37157522:- chr2:37119959:- chr2:37326353-37384665:- chr2:37347102:- CEBPZ ENSG00000115816.15 protein_coding - - chr2:37201612-37231596:- chr2:37203008:- chr2:37428755-37458739:- chr2:37430151:- chr2:37117380,chr2:37117384 chr2:37207327,chr2:37207328 NA NA chr2:37344523,chr2:37344527 chr2:37434470,chr2:37434471 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Double-stranded_RNA_binding_motif(100%),Protein_kinase_domain(56%)| PK_Tyr_Ser-Thr(1%),Pkinase(55%),dsrm(100%)| 3 4 9 158 394 ENST00000681507.1 ENST00000234170.10 upstream downstream mismatches(2) GTTCAAG___GTCAAAGACTAAGTGCCTTTTCATCCAAATGGAATTCTGTGATAAAGGGACCTTGGAACAATGGATTGAAAAAAGAAGAGGCGAGAAACTAGACAAAGTTTTGGCTTTGGAACTCTTTGAACAAATAACAAAAGGGGTGGATTATATACATTCAAAAAAATTAATTCATAGAGATCTTAAG|GGCCAAGAAAAAAGAAAAGAAACTTAAATGATTCCAGCCTATTTGTATCTGCTGAAGAG___TTTGGCCATCTATTGGATGAAAATATGGGATCCAAGTTTGATAACATTGGCATGAATGCCATGGCTAACAAAGATAATGCAA___GTCTCAAACAGCTTAGATGGGAGGCTGAACGTGATGACTGGCTACACAACAGAGATGCAAAAAGTATCATCtAG SRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLK|gqekrket* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Interferon-induced Other PEK P19525 FALSE NA NA NA NA NA NA TRUE Breast,Bladder no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma BREAST,BLADDER no_match 37349649,37362627|37362627 FALSE,FALSE|FALSE 37429046,37430151|37429046 FALSE,TRUE|FALSE YES,PARTIALLY Out-of-frame,Out-of-frame TRUE Bladder BLADDER no_match 37135484 FALSE 37206105 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15951 TBL1XR1::NAALADL2 ENSG00000177565.19::ENSG00000177694.16 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177098466:- chr3:176737128-176945788:- chr3:176816254:- NAALADL2 ENSG00000177694.16 protein_coding + - chr3:174438573-175810548:+ chr3:175649404:- chr3:174156363-175528336:+ chr3:175367192:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 2 8 5 914 17 ENST00000457928.7 unknown upstream downstream mismatches(2) CTCCATTCCCGGGAGGGGGGAGCGGCGTTGGAGGCCACCGTTTCCAG___CATCAACAACAGCAACTTGTGATTGGCGGTGACCGGATATTCAGTTGCACATCCCCACATCAATGCACTGCCAATG|AGACACTTATGGGACAGTTAAGAGCTTGGCAAGTATCAGAAGGCCAGGAAAGAGTCTTTCTTCATTGAAGGTCTCTGATAATGCCAGTGGAGTCTTGGAATATGGAACTTCCTCTGAAAT___GATGTATGCCAAAGTCTGTG...CGAAAAACACACTGGGAGAGAGGATAAAAAGAAGAGCAGAAC...___AGGCCTTCTGGAAAGGAGAAGAAAAAAGCAAATATGAAGACATCATTTATTAGTGAATACACTGTTCTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 15963 KIF13B::ENSG00000288735 ENSG00000197892.13::ENSG00000288735.2 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIF13B ENSG00000197892.13 protein_coding - - chr8:29067278-29263124:- chr8:29262980:- chr8:28924795-29120641:- chr8:29120497:- ENSG00000288735 ENSG00000288735.2 lncRNA - - chr8:29288506-29320284:- chr8:29292684:- chr8:29146023-29177801:- chr8:29150201:- chr8:29260077,chr8:29260079 chr8:29293489,chr8:29293488 NA NA chr8:29117594,chr8:29117596 chr8:29151006,chr8:29151005 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Kinesin_motor_domain(2%)| Kinesin(0%),Microtub_bd(0%)| 0 2 1 12 3 ENST00000524189.6 ENST00000701393.1 upstream downstream none GAACGAGTTCCTCGGCGGCTGCAGGATGGGGGACTCCAAAGTGAAAGTGGCGGTGCGGATACGACCCATGAACCGGCGAG|ACGCTGCAGGGCTTGGCGGAAGATCTGAGCCATTTGCCTGGACGTTCTCCATGCTATTGTGATCGGCCTCATCTGTCTGAAACCTTGCTGACCCCGGCTTATCTGGTGTTGGACCAAAT MGDSKVKVAVRIRPMNRR|daaglggrsepfawtfsmll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15980 TM2D2::ADAM9 ENSG00000169490.17::ENSG00000168615.13 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2788 FALSE NA TM2D2 ENSG00000169490.17 protein_coding - - chr8:38988808-38996824:- chr8:38996419:- chr8:38846327-38854343:- chr8:38853938:- ADAM9 ENSG00000168615.13 protein_coding + + chr8:38996754-39105445:+ chr8:39007886:+ chr8:38854273-38962964:+ chr8:38865405:+ chr8:38996237,chr8:38996237,chr8:38996241 chr8:38997359,chr8:38997353,chr8:38997349 NA NA chr8:38853756,chr8:38853756,chr8:38853760 chr8:38854878,chr8:38854872,chr8:38854868 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none |ADAM_cysteine-rich(100%),Disintegrin(100%),Reprolysin_(M12B)_family_zinc_metalloprotease_(100%),Reprolysin_family_propeptide(100%) |ADAM_CR(100%),Disintegrin(100%),Pep_M12B_propep(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_4(100%),Reprolysin_5(100%) 2 51 0 512 693 ENST00000456845.6 ENST00000678474.1 upstream upstream duplicates(4) GTTGTGGTTGAGGCCGGGTCTCCGCTCCTGTGCCCGGGAAGATGGTGCTAGGTGGTTGCCCG|GCTTTCAACAGACCTCACATCTTTCTTCTTATGAAATTATAACTCCTTGGAGATTAACTAGAGAAAGAAGAGAAGCCCCTAGGCCCTATTCAAAACAA___GTATCTTATGTTATTCAGGCTGAAGGAAAAGAGCATATTATTCACTTGGAAAGGAACAA___AGACCTTTTGCCTGAAGATTTTGTGGTTTATACTTACAACAAGGAAGGGACTTTAATCACTGACCATCCCAATATACAG___AATCATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 38853732 FALSE 38865405 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15982 CDK14::LINC02932 ENSG00000058091.17::ENSG00000243144.7 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2789 TRUE 1067 CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:91079480:+ chr7:90095738-90839905:+ chr7:90708795:+ LINC02932 ENSG00000243144.7 lncRNA + + chr7:91311368-91515427:+ chr7:91493395:+ chr7:90940683-91144742:+ chr7:91122710:+ chr7:91099545,chr7:91099542 chr7:91463222,chr7:91463216 NA NA chr7:90728860,chr7:90728857 chr7:91092537,chr7:91092531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Protein_kinase_domain(87%)| PK_Tyr_Ser-Thr(100%),Pkinase(90%)| 0 2 8 95 14 ENST00000380050.8 ENST00000667320.1 downstream upstream duplicates(2),mismatches(1) CGAATATTTCTG___GTTCTTGGAACACCAAATGAGGACACATGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAG___AACGCTTTACCCTGTACAGCTCTAAAAACCTTAGACAAGCATGGAATAA|GAACAATGGTTCAGGATTCACTAATTCAGTATTAGCAGCAACTTTACGGAACAAAACTACTGTGGATAATGAGAATTCACTGCGCCCGTTGTTTAAACAGTTAACAGCAGTCACTTTAGTGCCTTTTGTAGAGACAGAGCA___CTATGTGAAGATTGTGCCTGCTTCCTCTTTGCCTTCCACCATGATTGGAAGTTTCCTGAGACCTTCCCAGCAGCAGAAGCCTATACAGTCTGCAGAACT___AGTTCCCCAGCTATCCCCCAGTGGCTTGGAGATTCC RIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNk|nngsgftnsvlaatlrnkttvdnenslrplfkqltavtlvpfvetehyvkivpasslpstmigsflrpsqqqkpiqsaelvpqlspsglei NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15983 CDK14::LINC02932 ENSG00000058091.17::ENSG00000243144.7 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2789 TRUE 1067 CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:91079480:+ chr7:90095738-90839905:+ chr7:90708795:+ LINC02932 ENSG00000243144.7 lncRNA + + chr7:91311368-91515427:+ chr7:91496503:+ chr7:90940683-91144742:+ chr7:91125818:+ chr7:91099545,chr7:91099542 chr7:91463222,chr7:91463216 NA NA chr7:90728860,chr7:90728857 chr7:91092537,chr7:91092531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Protein_kinase_domain(87%)| PK_Tyr_Ser-Thr(100%),Pkinase(90%)| 0 2 6 95 33 ENST00000380050.8 ENST00000667320.1 downstream upstream duplicates(1) CGAATATTTCTG___GTTCTTGGAACACCAAATGAGGACACATGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAG___AACGCTTTACCCTGTACAGCTCTAAAAACCTTAGACAAGCATGGAATAA|CTATGTGAAGATTGTGCCTGCTTCCTCTTTGCCTTCCACCATGATTGGAAGTTTCCTGAGACCTTCCCAGCAGCAGAAGCCTATACAGTCTGCAGAACTGTGAGCAGATTAAACCTCTTTTCTTAATAAAT...CCAGAAGGTGGCTGCGTGGACAGTGACTACATTCTCAGCTCCATGCCTATTTGG___ATGGTCTGAGGCCTTCACTCCTCACCCTTCCTGGATGTGGTTGCGCC...TGTTCCTCTTAATATTTCAAGTCTAAACCCTGAATCCAAGACCCGAAAGGAAAGGAAGTTTTGCCCACAAAGCAGCTCCCACAGCAAATGATGAATGCTCC RIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNn|yvkivpasslpstmigsflrpsqqqkpiqsael* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15984 CDK14::LINC02932 ENSG00000058091.17::ENSG00000243144.7 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2789 TRUE 1067 CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:91079480:+ chr7:90095738-90839905:+ chr7:90708795:+ LINC02932 ENSG00000243144.7 lncRNA + + chr7:91311368-91515427:+ chr7:91513728:+ chr7:90940683-91144742:+ chr7:91143043:+ chr7:91099545,chr7:91099542 chr7:91463222,chr7:91463216 NA NA chr7:90728860,chr7:90728857 chr7:91092537,chr7:91092531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Protein_kinase_domain(87%)| PK_Tyr_Ser-Thr(100%),Pkinase(90%)| 1 0 5 95 33 ENST00000380050.8 ENST00000418395.1 downstream upstream none AAGACATTCAGGATCAACTTGAACGAATATTTCTG___GTTCTTGGAACACCAAATGAGGACACATGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAG___AACGCTTTACCCTGTACAGCTCTAAAAACCTTAGACAAGCATGGAATAA|AGTTCCCCAGCTATCCCCCAGTGGCTTGGAGATTCCCATTTCAAGAGTGTAGAGTTCTACCCAGAAGGTGGCTGCGTGGACAGTGACTACATTCTCAGCTCCATGCCTATTTGG___ATGGTCTGAGGCCTTCACTCCTCACCCTTCCTG DIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNk|vpqlspsgleipisrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15985 CDK14::LINC02932 ENSG00000058091.17::ENSG00000243144.7 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2789 TRUE 1067 CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:91079480:+ chr7:90095738-90839905:+ chr7:90708795:+ LINC02932 ENSG00000243144.7 lncRNA + + chr7:91311368-91515427:+ chr7:91466845:+ chr7:90940683-91144742:+ chr7:91096160:+ chr7:91099545,chr7:91099542 chr7:91463222,chr7:91463216 NA NA chr7:90728860,chr7:90728857 chr7:91092537,chr7:91092531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Protein_kinase_domain(87%)| PK_Tyr_Ser-Thr(100%),Pkinase(90%)| 2 7 11 95 21 ENST00000380050.8 ENST00000667885.1 downstream upstream duplicates(1),mismappers(4),mismatches(2) CATCTTTGTTGAAATGATCCAAGGAGTTGCTGCTTTTCCAGGAATGAAAGACATTCAGGATCAACTTGAACGAATATTTCTG___GTTCTTGGAACACCAAATGAGGACACATGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAG___AACGCTTTACCCTGTACAGCTCTAAAAACCTTAGACAAGCATGGAATAA|CATGATTGTGAGGCCTCCCCACCCACATGGAATG___CTATGTGAAGATTGT...___AGTTCCCCAGCTATCCCCCAGTGGCTTGGAGATTCCCATTTCAAGAGTGTAGAGTTCTACCCAGAAGGTGGCTGCGTG...CTATTTGGGTGAGGCCCTGTGATGAATGGTCATCAGTGGAATATGAGCAGAAGTGTTATGTGTCAGAAGAAGACATGCCTTCTCCATCCTTTCTTTTCCCC IFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNn|mivrpphphgmlced NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 15992 ZFPM2-AS1::ZFPM2 ENSG00000251003.9::ENSG00000169946.14 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:106060381:- chr8:106558317-107072752:- chr8:107072609:- ZFPM2 ENSG00000169946.14 protein_coding + - chr8:104590733-105804539:+ chr8:105464199:- chr8:105602961-106816767:+ chr8:106476427:- chr8:105944741 chr8:105640955 NA NA chr8:106956969 chr8:106653183 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' medium none none none 1 1 1 355 45 ENST00000520433.5 unknown upstream downstream none AGCACATCCGTTTTCCTTACAGTATGTAGTACGCATTCTACCTTTTCCTACAATGAATCCACCAGCAGAAATTCCTGTACACATCTTATCAACAAAGAATTTGAACCTCAAAGA|AAAGTGAACTGAGCTGTTCTGGATGGGCCATAAAACTGGAAGGTATAaAGCCAATTGAAAATAGAGATCTTATGGGAACAATTCTGCAAGAATGTCTGAAGAGGTCTGTGGAAGGCAAGTCCCAAGGAGAAAAGGAAAGAGAGATAAG...TGTTCTGCAAAACTGCGAAGCCCTCAGAAGAAACAAAGGGAACAGAGAAGACAGCCTAGCGGGGAGGCGGGGATTTTGTACTTTCCTAATTCTGGCATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16000 PI4KA::SNAP29 ENSG00000241973.11::ENSG00000099940.12 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PI4KA ENSG00000241973.11 protein_coding - - chr22:20707691-20859417:- chr22:20793193:- chr22:21061979-21213705:- chr22:21147481:- SNAP29 ENSG00000099940.12 protein_coding + + chr22:20859007-20891214:+ chr22:20870337:+ chr22:21213295-21245502:+ chr22:21224625:+ chr22:20731001,chr22:20773238,chr22:20772824 chr22:20869874,chr22:20863055,chr22:20862841 NA NA chr22:21085289,chr22:21127526,chr22:21127112 chr22:21224162,chr22:21217343,chr22:21217129 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none none PI4K_N(18%)| 1 0 1 5074 18418 ENST00000255882.11 ENST00000215730.12 upstream upstream duplicates(1) GAAGGCCAGCTCCGTTGTATACTCAGCCACCAAAGATTACAAGGACCACGGCTATAG___GCATTGCTCCCTGGCAGTGATTAATGCCCTGGCCAACATCGCGG...AGAAGGGCCCTGCCCTAAAG___GCTTCTAGCAGTGCAGGGAACTTGGGAGTACTCATTCCTGTAATAGCTGTG|GAGCTCGCCCGTCAGCGAGGAGTCCTGGAG KGPALKASSSAGNLGVLIPVIAV|ELARQRGVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 21212858|21212858 FALSE|FALSE 21224625|21235337 TRUE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16059 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE TRUE 1548 TRUE 2803 TRUE 1068 DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119171969:+ chr5:118373467-118584833:+ chr5:118507664:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(52%)|Domain_of_unknown_function_(DUF758)_(100%) Rav1p_C(100%),WD40(70%)|DUF758(100%) 12 17 15 78 575 ENST00000539542.6 ENST00000274456.6 downstream upstream duplicates(3),mismatches(3) AGAATCTCAGCAG___GAAACATCAGAACCACTATTTTCTAGCCCTCTGTCAGAGCAAACCTCAGTGCCTCTCCTCTTTGCTTGTACAGCCAATGCCAAAACAGTAGTTGCCAATCCATTATTGCACCTTAGTAATCTGACACATGATATTCTCCATGCCATAATAAACTTTGATTCACCACCCCACCCTGATATCCAAAGCAATAAA|TGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAGATGAGCTAGCATTGATGGAGAAATTTAAGAAGAAAGTTCATCAGCTTGCTATGACCGTG ESQQETSEPLFSSPLSEQTSVPLLFACTANAKTVVANPLLHLSNLTHDILHAIINFDSPPHPDIQSNK|wpqmslipktwpfrhkrrswvkwcpnpsppp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5706 chr5:119154637-119154716:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16060 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA TRUE 2803 TRUE 1068 DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119171280:+ chr5:118373467-118584833:+ chr5:118506975:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(52%)|Domain_of_unknown_function_(DUF758)_(100%) Rav1p_C(100%),WD40(70%)|DUF758(100%) 3 3 7 73 575 ENST00000539542.6 ENST00000274456.6 downstream upstream duplicates(1),mismatches(2) GAAGATTTGCCTCACCAAACAAAAGTGAAACAACTGAGAGAAAATTTTCAGGAAAAAAGACAGTGGCTCTTGAAGTATCAGTCACTTTTGAGAATGTTTCTTAGTTACTGCATACTTCATGGATCCCATGGTGGGGGTCTTGCATCTGTAAGAATGGAATTGATTTTGCTTTTGCAAGAATCTCAGCAG|TGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAA EDLPHQTKVKQLRENFQEKRQWLLKYQSLLRMFLSYCILHGSHGGGLASVRMELILLLQESQQ|wpqmslipktwpfrhkrrswvkwcpnpsppp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5706 chr5:119154637-119154716:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16066 LRPPRC::TCF7L1 ENSG00000138095.20::ENSG00000152284.5 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LRPPRC ENSG00000138095.20 protein_coding - - chr2:43886224-43996226:- chr2:43896634:- chr2:44113363-44223365:- chr2:44123773:- TCF7L1 ENSG00000152284.5 protein_coding + - chr2:85133392-85310387:+ chr2:85221543:- chr2:85360515-85537510:+ chr2:85448666:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PPR_repeat(66%),Pentacotripeptide-repeat_region_of_PRORP(100%),Pentatricopeptide_repeat_domain(100%)| PPR(72%),PPR_3(100%),PPR_long(100%)| 2 6 6 578 13 ENST00000260665.12 unknown upstream downstream duplicates(2),mismatches(4) GCCAGAGCTCTCCTACAG___AGATGTGGTGCAATTGCTGAACAAACCCCGATTTTGTTGTTGTTCCTCCTTAGGAATTCTAGGAAACAAGGAAAG|GACGATGCAGTAAGAAGGCCTGCACCAGATGCTGAGCAGATGTCGGCACTATGCCCTTGGACTTCCCAGCCTCCTTAACTGTGAGCCAAGTAAATATCTTTCCTTTATAAATTACCCAGTTTGTGGTGTGCTGTTACAGCAACACAAAATGAACTAAGACAGG?AACAAGACTATTTCTTCTTCATTTATTAGCTGAAATACTTCTGTAAAGAAAAACTTTCCTCAACTAGTGGCCCAGTGGCAAACAGCACACAGCACAGGCAGGACAAATGCGT ARALLQRCGAIAEQTPILLLFLLRNSRKQGK|ddavrrpapdaeqmsalcpwtsqpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16067 CCSER1::MMRN1 ENSG00000184305.16::ENSG00000138722.10 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1550 TRUE 2805 TRUE 1069 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90313047:+ chr4:91048545-92526446:+ chr4:91234198:+ MMRN1 ENSG00000138722.10 protein_coding + + chr4:89879532-89954629:+ chr4:89951605:+ chr4:90800683-90875780:+ chr4:90872756:+ chr4:90350694,chr4:90350693 chr4:89939118,chr4:89939114 NA NA chr4:91271845,chr4:91271844 chr4:90860269,chr4:90860265 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |C1q_domain(100%),EGF-like_domain(100%) |C1q(100%),EGF(100%),hEGF(100%) 0 6 4 55 11 ENST00000509176.6 ENST00000394980.5 downstream upstream low_entropy(1) GCCAGTAGTCTCAGTCCATTTCGTGAAGGAAGATTTATAGAGAGGAGACTGCGATCCTCGTCAGAAGGCACTGCAGGGAGTAGCAGAATGATTTTGAAACCGAAAGATGGAAATATAGAAGAAGTTAATAGTTTAAGAAAGCAAAGAGCAGGTTCTTCATCTTCAAAAATGAACAGTTTG|AGGAGTATTCAAGCTGTAGTCGGCATCCGTGCCAAAATGGGGGCACGTGCATAAATGGAAGAACTAGCTTTACCTGTGCCTGCAGACATCCTTTTACTGGTGACAACTGCACTATCAAGCTTGTGGAAGAAAATGCTTTAGCTCCAG___ATTTTTCCAAAGGATCTTACAGATATGCACCCATGGTGGCATTTTTTGCATCTCATACGTATGGAATGACTATACCTGGT ASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDGNIEEVNSLRKQRAGSSSSKMNSL|rsiqavvgirakmgara* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16068 CCSER1::MMRN1 ENSG00000184305.16::ENSG00000138722.10 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 2805 TRUE 1069 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90325707:+ chr4:91048545-92526446:+ chr4:91246858:+ MMRN1 ENSG00000138722.10 protein_coding + + chr4:89879532-89954629:+ chr4:89951605:+ chr4:90800683-90875780:+ chr4:90872756:+ chr4:90350694,chr4:90350693 chr4:89939118,chr4:89939114 NA NA chr4:91271845,chr4:91271844 chr4:90860269,chr4:90860265 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |C1q_domain(100%),EGF-like_domain(100%) |C1q(100%),EGF(100%),hEGF(100%) 1 0 4 1 11 ENST00000509176.6 ENST00000394980.5 downstream upstream none CTGCGATCCTCGTCAGAAGGCACTGCAGGGAGTAGCAGAATGATTTTGAAACCGAAAGATGGAAATATAGAAGAAGTTAATAGTTTAAGAAAGCAAAGAGC...ACAGTCACTGGAATCTGAG|AGGAGTATTCAAGCTGTAGTCGGCATCCGTGCCAAAATGGGGGCACGTGCATAAATGGAAGAACTAGCTTTACCTGTGCCTGCAGACATCCTTTTACTGGTGACAACTGCACTATCAAGCTTGTGGAAGAAAATGCTTTAGCTCCAG___ATTTTTCCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16071 CCSER1::ENSG00000251095 ENSG00000184305.16::ENSG00000251095.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1551 TRUE 2806 TRUE 1070 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90127831:+ chr4:91048545-92526446:+ chr4:91048982:+ ENSG00000251095 ENSG00000251095.8 lncRNA + + chr4:89410960-89726752:+ chr4:89719826:+ chr4:90332111-90647903:+ chr4:90640977:+ chr4:90236604,chr4:90236603 chr4:89656048,chr4:89656044 NA NA chr4:91157755,chr4:91157754 chr4:90577199,chr4:90577195 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 3 2 3 116 11 ENST00000509176.6 ENST00000507916.6 downstream upstream none CTGGGAAGCGGTGGCTCGGGCAGAGCAGCTCCGCTGGCGCAGGCAGGAGGAGCAGGAGGATTATTAAATAACGCAGCTGGACTCTGTGCAACTGGGAGTGGAGAGGAGCCCAACAGCCGAGAAGGGGAGGGAGGGCAGAGGAGGGGGACCAGGAAGGACACCCCCGTGCCCCGAAGACATAAATCCCTGAGTGCCCGGGAGGAGCCTTAACAAGCGCACGGAGCCCTCAAG|GTAGTCGTACAGTGTCCAGAAGGCAAAAGGACAAGTATGCACTGCCCTACTTACCTACTTTCCACACTGCTGCACAGGAAAATCTGACAGAGGACAATAACAAACATCTCACCAGCTCATGCGTTCTTTTTTGATCCTAATTCCGAGAGACTCACCAAAG...GGAAATATTGTAATTGCTGGTACATTTGTTGTTCTGGCATAAAGTAGAAATTGTCAG___TTACCAGAACAATACTCAGTGAACTTATGAATATATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16072 CCSER1::ENSG00000251095 ENSG00000184305.16::ENSG00000251095.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 2806 TRUE 1070 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90127831:+ chr4:91048545-92526446:+ chr4:91048982:+ ENSG00000251095 ENSG00000251095.8 lncRNA + + chr4:89410960-89726752:+ chr4:89691285:+ chr4:90332111-90647903:+ chr4:90612436:+ chr4:90236604,chr4:90236603 chr4:89656048,chr4:89656044 NA NA chr4:91157755,chr4:91157754 chr4:90577199,chr4:90577195 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 0 2 3 116 5 ENST00000509176.6 ENST00000507916.6 downstream upstream none CTGGGAAGCGGTGGCTCGGGCAGAGCAGCTCCGCTGGCGCAGGCAGGAGGAGCAGGAGGATTATTAAATAACGCAGCTGGACTCTGTGCAACTGGGAGTGGAGAGGAGCCCAACAGCCGAGAAGGGGAGGGAGGGCAGAGGAGGGGGA...CAGGAAGGACACCCCCGTGCCCCGAAGACATAAATCCCTGAGTGCCCGGGAGGAGCCTTAACAAGCGCACGGAGCCCTCAAG|GTGGGTGTCATTGTGACTGGCTGCTACCTCCCCATGAGTCTTCTAAAATAAAACCTGCAAATTCACATCTTCCCCATGCTTCCAGAGAATGCATATTCTTCCTTTGAAAAAAGAAAAC...CCAAAGACATGAAGAGAAAACAAACAATACTTTTCTTGGAAATATTGTAATTGCTGGTACATTTGTTGTTCTGGCATAAAGTAGAAATTGTCAGtTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16073 CCSER1::ENSG00000251095 ENSG00000184305.16::ENSG00000251095.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 2806 TRUE 1070 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90127831:+ chr4:91048545-92526446:+ chr4:91048982:+ ENSG00000251095 ENSG00000251095.8 lncRNA + + chr4:89410960-89726752:+ chr4:89726384:+ chr4:90332111-90647903:+ chr4:90647535:+ chr4:90236604,chr4:90236603 chr4:89656048,chr4:89656044 NA NA chr4:91157755,chr4:91157754 chr4:90577199,chr4:90577195 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 3 0 116 15 ENST00000509176.6 ENST00000659878.1 downstream upstream none ATTAAATAACGCAGCTGGACTCTGTGCAACTGGGAGTGGAGAGGAGCCCAACAGCCGAGAAGGGGAGGGAGGGCAGAGGAGGGGGACCAGGAAGGACACCCCCGTGCCCCGAAGACATAAATCCCTGAGTGCCCGGGAGGAGCCTTAACAAGCGCACGGAGCCCTCAAG|ATTGAAGCCACAAAATCCACAGCACACAAAGACCCTGCTACCATGTATTCACTTCAGTGAAAGGGAAGCACCGAAATGCTGAGTGGGGGCAGGTACAGATACTTCAATCACTGCTGATGGAAGACTTCGAGATACACTGTAAAAACTTTGAGAAATGTCATGACTGGGCACATTGGAACTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16075 EHD4::MAPKBP1 ENSG00000103966.11::ENSG00000137802.14 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EHD4 ENSG00000103966.11 protein_coding - - chr15:41895933-41972557:- chr15:41943067:- chr15:42188131-42264755:- chr15:42235265:- MAPKBP1 ENSG00000137802.14 protein_coding + - chr15:41774434-41827855:+ chr15:41796494:- chr15:42066632-42120053:+ chr15:42088692:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Dynamin_family(67%),N-terminal_EH-domain_containing_protein(100%)| Dynamin_N(55%),EHD_N(100%),MMR_HSR1(55%)| 3 4 7 96 18 ENST00000220325.9 unknown upstream downstream mismatches(3) CACCGGCAAGACCACCTTCATCAG___ATACCTACTGGAGCAGGATTTCCCAGGCATGAGGATTGGTCCGGAGCCCACCACAGACTCCTTCATCGCCGTGATGT...GAGAGACTGAGGGCAGCACCCCAGGGAATGCTTTAGTCGTGGACCCCAAAAAGCCGTTTAGAAAGCTCAGTCGCTTTGGAAACGCTTTCCTGAATCG___ATTCATGTGCTCACAGCTCCCCAATCAGGTCCTGAAGAGCATCAGCGTCATCGACAGCCCCGGCATCCTTTCTGGGGAGAAGCAGCGCATCAGCCGAG|GGAGGTTTTGCGTTGAGCTCCACTTTCAAAGGATCTAAGAGTCCAGAGTTCCTGCAAGGCCTCCAACATCTATGCTTATTTTGCAAGGCTTCAACATGATGGACTTCATAAACTGACTCTCCCTCTGATAACCTTCTTCCTCGCCTCCTTTCCAAGAAGGTGGTAGAGCTTCCACCTGCCCTAGAAGATGGAGACAAATTTGAACATCCCCTGCAAACACACCCCAGG...GTTTCAAGTCACTATTATCTCTCACTTGGACTGTAACACCCACATGCTCTCCCTGCTTCAGGCCTTACCCCCTATAGTCTTTTCTCCACATGGTAGGTCAC ETEGSTPGNALVVDPKKPFRKLSRFGNAFLNRFMCSQLPNQVLKSISVIDSPGILSGEKQRISR|grfcvelhfqri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16080 MEF2C::MEF2C-AS1 ENSG00000081189.17::ENSG00000248309.9 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA TRUE 2807 TRUE 1071 MEF2C ENSG00000081189.17 protein_coding - - chr5:88717117-88904257:- chr5:88882955:- chr5:88012934-88200074:- chr5:88178772:- MEF2C-AS1 ENSG00000248309.9 lncRNA + + chr5:88883328-89466398:+ chr5:89094959:+ chr5:88179145-88762215:+ chr5:88390776:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 0 2 3029 137 ENST00000504921.7 ENST00000514092.5 upstream upstream none CAGACATCTTCGGGCTGCTATTGGATTGACTTTGAAGGTTCTGTGTGGGTCGCCGTGGCTGCATGTTTGAATCAGGTGGAGAAGCACTTCAACGCTGGACGAAGTAAAGATTATTGTTGTTATTTTTTTTTTCTCTCTCTCTCTCTCTTAAGAAAGGAAAATATCCCAAGGACTAATCTGATCGGGTCTTCCTTCAT|GCAGTTTTGAACATCTGGAGGCCTGATTTATTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16081 MEF2C::MEF2C-AS1 ENSG00000081189.17::ENSG00000248309.9 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA TRUE 2807 TRUE 1071 MEF2C ENSG00000081189.17 protein_coding - - chr5:88717117-88904257:- chr5:88882955:- chr5:88012934-88200074:- chr5:88178772:- MEF2C-AS1 ENSG00000248309.9 lncRNA + + chr5:88883328-89466398:+ chr5:88965841:+ chr5:88179145-88762215:+ chr5:88261658:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 0 2 3029 258 ENST00000504921.7 ENST00000514092.5 upstream upstream none CCCAGACATCTTCGGGCTGCTATTGGATTGACTTTGAAGGTTCTGTGTGGGTCGCCGTGGCTGCATGTTTGAATCAGGTGGAGAAGCACTTCAACGCTGGACGAAGTAAAGATTATTGTTGTTATTTTTTTTTTCTCTCTCTCTCTCTCTTAAGAAAGGAAAATATCCCAAGGACTAATCTGATCGGGTCTTCCTTCAT|GTTCTCTAAACATGAATATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16082 MEF2C-AS1::MEF2C ENSG00000248309.9::ENSG00000081189.17 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MEF2C-AS1 ENSG00000248309.9 lncRNA + + chr5:88883328-89466398:+ chr5:88965915:+ chr5:88179145-88762215:+ chr5:88261732:+ MEF2C ENSG00000081189.17 protein_coding - - chr5:88717117-88904257:- chr5:88761328:- chr5:88012934-88200074:- chr5:88057145:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Holliday_junction_regulator_protein_family_C-terminal_repeat(100%) |HJURP_C(100%) 0 1 1 249 2786 ENST00000514092.5 ENST00000629612.2 downstream downstream none GGAAGACAGAAGAACATGGAAGCCATGTGAAAAAAACGGATCCTAAG|ACGTTGAGAAAGAAGGGCCTTAATGGCTGTGACAGCCCAGACCCCGATGCGGACGATTCCGTAGGTCACAGCCCTGAGTCTGAGGACAAGTACAGGAAAATTAACGAAGATATTGATCTAATGATCAGCAGGCAAAGATTGTGT___GCTGTTCCAC...GGGAGGATATCCATCAGCCATTTCAACAACATATGGTACCG___AGTACTCTCTGAGTAGTGCAGACCTGTCATCTCTGTCTGGGTTTAACACCGCCAGCGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16093 DIAPH2::DIAPH2-AS1 ENSG00000147202.19::ENSG00000236256.9 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIAPH2 ENSG00000147202.19 protein_coding + + chrX:96684712-97604997:+ chrX:97383969:+ chrX:95939711-96859996:+ chrX:96638968:+ DIAPH2-AS1 ENSG00000236256.9 lncRNA - + chrX:97431286-97642589:- chrX:97639725:+ chrX:96686285-96897588:- chrX:96894724:+ chrX:97475883,chrX:97475877 chrX:97621485,chrX:97621476 NA NA chrX:96730882,chrX:96730876 chrX:96876484,chrX:96876475 NA NA sense antisense unknown CDS intron deletion/read-through/5'-5' low none Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%)| Drf_FH3(100%),Drf_GBD(100%),FH2(100%),RPA_C(100%)| 0 0 3 46 31 ENST00000324765.13 unknown downstream upstream none GTTCTTTGGTGATCTCAACAACTTCCGAACTTTGTTTTTG___GAAGCAGTGAGAGAAAACAATAAGAGAAGAGAAATGGAAGAGAAGACCAGGAGGGCAAAAC...|...CCGGGAGACAATGGCATCAGGGACCTCTGCTGCTGCCTACAGATTCACATGCAGTATTGGCAATCTCAGGTCGGCTGTCGGTTTCACA___AAAGACAGAATTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16094 PTPRF::B4GALT2 ENSG00000142949.17::ENSG00000117411.18 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRF ENSG00000142949.17 protein_coding + + chr1:43525187-43623666:+ chr1:43613715:+ chr1:43990858-44089337:+ chr1:44079386:+ B4GALT2 ENSG00000117411.18 protein_coding + + chr1:43978943-43991170:+ chr1:43984865:+ chr1:44444615-44456842:+ chr1:44450537:+ chr1:43614808,chr1:43614812,chr1:43614808 chr1:43981872,chr1:43981876,chr1:43981869 NA NA chr1:44080479,chr1:44080483,chr1:44080479 chr1:44447544,chr1:44447548,chr1:44447541 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(100%)|N-terminal_domain_of_galactosyltransferase(100%),N-terminal_region_of_glycosyl_transferase_group_7(35%) I-set(100%),Ig_2(100%),Ig_3(100%),fn3(100%),ig(100%)|Glyco_transf_7C(100%),Glyco_transf_7N(3%) 2 1 0 64 145 ENST00000359947.9 ENST00000372324.6 downstream upstream mismatches(1) AGTCGATCGGACTGAAGGACTCCTTGCTGGCCCACTCCTCTGACCCTGTGGAGATGCGGAGGCTCAACTACCAGACCCCAG___GTATGCGAGACCACCCACCCATCCCCATCACCGACCTGGCGGACAACATCGAGCGCCTCAAAGCCAACGATGGCCTCAAGTTCTCCCAGGAGTATGAG|CATGGTGAGGACACCTTCAACCGGGCCAAGCTGCTTAACGTGGGCTTCCTAGAGGCGCTGAAGGAGGATGCCGCCTATGACTGCTTCATCTTCAGCGATGTGGACCTGGTCCCC...GCcGgGcCcACCAcCCCCGCCACTTTGCCATTGCCATGGACAAGTTTGGCTTCCG___GCTTCCCTATGCTGGCTACTTTG SIGLKDSLLAHSSDPVEMRRLNYQTPGMRDHPPIPITDLADNIERLKANDGLKFSQEYE|HGEDTFNRAKLLNVGFLEALKEDAAYDCFIFSDVDLV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16105 TGFA::ADD2 ENSG00000163235.16::ENSG00000075340.23 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1552 TRUE 2811 TRUE 1072 TGFA ENSG00000163235.16 protein_coding - - chr2:70447284-70554193:- chr2:70514859:- chr2:70674416-70781325:- chr2:70741991:- ADD2 ENSG00000075340.23 protein_coding - - chr2:70607618-70768225:- chr2:70706442:- chr2:70834750-70995357:- chr2:70933574:- chr2:70488675,chr2:70488680 chr2:70711842,chr2:70711844 NA NA chr2:70715807,chr2:70715812 chr2:70938974,chr2:70938976 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) |Aldolase_II(100%) 159 53 71 1854 97 ENST00000295400.11 ENST00000430656.5 upstream downstream duplicates(37),low_entropy(2),mismatches(12) CGCAGGTAGGGCAGGAGGCTGGAGAGCCTGCTGCCCGCCCGCCCGTAAAATGGTCCCCTCGGCTGGACAGCTCGCCCTGTTCGCTCTGG___GTATTGTGTTGGCTGCGTGCCAGGCCTTGGAGAACAGCACGTCCCCGCTGAGTG|AGTTCCAGGAGCGAATTGCAAACCCACCGGGAAAATGAGCGAAGAGACGGTCCCCGAGGCTGCCTCGCCGCCGCCCCCGCAGGGGCAGCCTTACTTTGACCGCTTCTCAGAGGACGACCCCGAGTACATGCGCCTTCGCAACCGGGCGGCGGACCTGCGGCAGGACTTCAACCTGATGGAGCAGAAGAAGCGCGT MVPSAGQLALFALGIVLAACQALENSTSPLS|efqerianppgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16106 TGFA::ADD2 ENSG00000163235.16::ENSG00000075340.23 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2811 TRUE 1072 TGFA ENSG00000163235.16 protein_coding - - chr2:70447284-70554193:- chr2:70553728:- chr2:70674416-70781325:- chr2:70780860:- ADD2 ENSG00000075340.23 protein_coding - - chr2:70607618-70768225:- chr2:70706442:- chr2:70834750-70995357:- chr2:70933574:- chr2:70488675,chr2:70488680 chr2:70711842,chr2:70711844 NA NA chr2:70715807,chr2:70715812 chr2:70938974,chr2:70938976 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) |Aldolase_II(100%) 1 0 10 1647 97 ENST00000394241.3 ENST00000430656.5 upstream downstream mismatches(2) AGCGCTGCGGGGCGAGTGCCAGCAGAGAGGCGCTCGGTCCTCCCTCCGCCCTCCCGCGCCGGGGGCAGGCCCTGCCTAGTCTGCGTCTTTTTCCCCCGCACCGCGGCGCCGCTCCGCCACTCGGGCACCGCAGGTAGGGCAGGAGGCTGGAGAGCCTGCTGCCCGCCCGCCCGTAAAATGGTCCCCTCGGCTGGACAGCTCGCCCTGTTCGCTCTGG|AGTTCCAGGAGCGAATTGCAAACCCACCGGGAAAATGAGCGAAGAGACGGTCCCCGAGGCTGCCTCGCCGCCGCCCCCGCAGGGGCAGCCTTACTTTGACCGCTTCTCAGAGGACGACCCCGAGTACATGCGCCTTCGCAACCGGGCGGCGGACCTGCGGCAGGACTTCAACCTGATGGAGCAGAAGAAGCGCG MVPSAGQLALFAL|efqerianppgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16107 MTAP::SLC24A2 ENSG00000099810.21::ENSG00000155886.12 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1553 FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ SLC24A2 ENSG00000155886.12 protein_coding - - chr9:19507452-19789037:- chr9:19622299:- chr9:19507450-19789035:- chr9:19622297:- chr9:21834125,chr9:21834127 chr9:19744217,chr9:19744219 NA NA chr9:21834124,chr9:21834126 chr9:19744215,chr9:19744217 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Phosphorylase_superfamily(43%)|Sodium/calcium_exchanger_protein(51%) PNP_UDP_1(27%)|Na_Ca_ex(96%) 5 24 10 34 66 ENST00000644715.2 ENST00000341998.7 downstream downstream duplicates(3),mismatches(5) TGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|CCATCTGCAGCCAGGGACAAGGATGAACCgACTCTACCG___GCTAAGCCGCGTCTCCAGCGAGGTGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAACTCATGATACACACCCTTGACCCACTCGCCGAAG VDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDs|hlqpgtrmnrlyrlsrvssevealppsttvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16108 KPNA1::LINC01090 ENSG00000114030.13::ENSG00000231689.3 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KPNA1 ENSG00000114030.13 protein_coding - - chr3:122421902-122514945:- chr3:122451534:- chr3:122140749-122233792:- chr3:122170381:- LINC01090 ENSG00000231689.3 lncRNA - + chr2:187712816-188384365:- chr2:188159250:+ chr2:188577543-189249092:- chr2:189023977:+ chr3:122451168,chr3:122451172 chr2:188129705,chr2:188129701 NA NA chr3:122170015,chr3:122170019 chr2:188994432,chr2:188994428 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Armadillo/beta-catenin-like_repeat(39%),Importin_beta_binding_domain(100%)| Arm(75%),HEAT(100%),IBB(100%)| 10 15 7 178 72 ENST00000344337.11 unknown upstream upstream duplicates(1),mismatches(1) CTCTTGGCAACATTGCTGGAGATAGTACCATGTGCAGGGACTATGTCTTAGACTGCAATATCCTTCCCCCTCTTTTGCA___GTTATTTTCAAAGCAAAACCGCCTGACCATGACCCGGAATGCAGTATGGGCTTTGTCTAATCTCTGTAGAGGGAAAAGTCCACCTCCAGAATTTGCAAAG|ATCACATAAGATGCCTTCCCAATAAGCCGAGGAAGTAGCTGTGTTTGCATCTGAGAAATATCTAGACTTCTTAGTACATACAGACCTAGAGCAGATCATTCCATTAAATACTCAAGAACAAGCCTGGTAAGATTTTCGAAAATGCAGGTATTGAGACCAACTAAATAGAATGGGGATTTTGCATGAATTTGCTCAAGGAATTAAG LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK|it* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16110 IFT122::LINC01934 ENSG00000163913.14::ENSG00000234663.7 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IFT122 ENSG00000163913.14 protein_coding + + chr3:129429607-129520510:+ chr3:129469417:+ chr3:129148450-129239353:+ chr3:129188260:+ LINC01934 ENSG00000234663.7 lncRNA + - chr2:181086076-181409321:+ chr2:181187042:- chr2:181950803-182274048:+ chr2:182051769:- chr3:129473698,chr3:129473697 chr2:181193066,chr2:181193067 NA NA chr3:129192541,chr3:129192540 chr2:182057793,chr2:182057794 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(100%)| MBD(100%),WD40(99%)| 7 5 7 99 11 ENST00000689313.1 unknown downstream downstream none GGTCAGTACCTGGCGCTGGGGATGTTCAATGGGATCATCAGCATACGGAACAAAAATGGCGAGGAGAAAGTAAAGATCGAGCGGCCGGGGGGCTCCCTCTCGCCAATATGGTCCATCTGCTGGAACCCTTCAAG___AGAGGAACGTAATGACATCCTGGCTGTGGCTGACTGGGGACAGAAAGTTTCCTTCTACCAGCTGAGTGGAAAACAG|ATATTGGGGGTCCAGAAAAGATGGCAGCTCCCTTTAAGAAG___AGAAGGAATCTCCAGAAAGTACTTAATGGTCCAACTGGAAAATGTAACAATACAGTGTTTCCTGGTTTTTCAATTTACTACAG___GGTTTCACTGTGTTGCCCAGGCCGGAGTGCAGTGgCGC GQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREERNDILAVADWGQKVSFYQLSGKQ|ilgvqkrwqlplrregisrkylmvqlenvtiqcflvfqfttgfhcvaqagvqw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16111 THRAP3::NAE1 ENSG00000054118.15::ENSG00000159593.15 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA THRAP3 ENSG00000054118.15 protein_coding + + chr1:36224432-36305357:+ chr1:36224505:+ chr1:36690033-36770958:+ chr1:36690106:+ NAE1 ENSG00000159593.15 protein_coding - + chr16:66802875-66873256:- chr16:66809031:+ chr16:66836778-66907159:- chr16:66842934:+ chr1:36251054,chr1:36251052 chr16:66806235,chr16:66806230 NA NA chr1:36716655,chr1:36716653 chr16:66840138,chr16:66840133 NA NA sense antisense unknown 5'UTR/splice-site CDS translocation/5'-5' high none none none 1 16 0 369 786 ENST00000469141.6 unknown downstream upstream duplicates(5) ACGCTGGGCGCGCTGTGGGGCGGGGGCGAGGTTCGGGCTGGTTGTTCCGTTGCGAGCTGCAGCTGCGATCTCTGTGGTAGGCCCAG|CTAAGGATCGACATCTTACCACTCGAAGAAATGCAGAATTGCTGCCTGAACAGAGGAAAGATATTCTGGAAGTAATGACTGTGACTGGTGAATATTATGAATCACAGGTGACTTTAAGAACAGAGAATTATGTGTATACCCTTCTCAGACATGAGAATGTGAAGAAATGTTTT...GAGAAAGCACTAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE thyroid hormone receptor associated protein 3 (TRAP150) 2 aneurysmal bone cyst mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16112 HIF1A::HIF1A-AS1 ENSG00000100644.17::ENSG00000258777.2 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61721823:+ chr14:62162231-62214977:+ chr14:62188541:+ HIF1A-AS1 ENSG00000258777.2 lncRNA - + chr14:61680723-61695892:- chr14:61688321:+ chr14:62147441-62162610:- chr14:62155039:+ chr14:61725741,chr14:61725739 chr14:61684472,chr14:61684467 NA NA chr14:62192459,chr14:62192457 chr14:62151190,chr14:62151185 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PAS_fold(39%)| PAS(4%),PAS_9(2%)| 9 0 2 365 23 ENST00000337138.9 unknown downstream upstream duplicates(1),mismatches(3) GTTTTTTATGAGCTTGCTCATCAGTTGCCACTTCCACATAATGTGAGTTCGCATCTTGATAAGGCCTCTGTGATGAGGCTTACCATCAGCTATTT...GTGATTTGGATATTGAAGATGACATGAAAGCACAGATGAATTGCTTTTATTTGAAAGCCTTGGATGGTTTTGTTATGGTTCTCACAGATGATGGTGACATGATTTACATTTCTGATAATGTGAACAAATACATGGGATTAACTCAG___TTTGAACTAACTGGACACAGTGTGTTTGATTTTACTCATCCATGTGACCATGAGGAAATGAGAGAAATGCTTACACACAGAAATG|AGTCTTGCTCTTGTCGTCCAGGGTGGAGTGCAGTGATGCGATTGCGGCTCAGTGAAACCTCCGCCTCCCACGTTCAAGCAATTCTTCTGCCTCAGCCTCCC DLDIEDDMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYMGLTQFELTGHSVFDFTHPCDHEEMREMLTHRN|escscrpgwsavmrlrlsetsashvqaillpqp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 16124 MRPL33::ENSG00000259080 ENSG00000243147.8::ENSG00000259080.1 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27772692:+ chr2:27994584-28210954:+ chr2:27995559:+ ENSG00000259080 ENSG00000259080.1 lncRNA + + chr2:27583046-27635174:+ chr2:27629859:+ chr2:27805913-27858041:+ chr2:27852726:+ chr2:27828280,chr2:27828280 chr2:27625783,chr2:27625780 NA NA chr2:28051147,chr2:28051147 chr2:27848650,chr2:27848647 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 3 0 4227 1243 ENST00000379666.7 ENST00000505973.1 downstream upstream none TGtGaGCCTTTTGGCCGGTGACGGAGACTGCCCAGGTGTGGTCACCATGTTCCTCTCCGCGGTCTTCT___TTGCCAAGAGCAAGTCAAA|AGGCTCACAGGACACCTGCATGCCCAAGGCACTCCACCGTATGTGATCAACCTGGATCCAGCAGTACATGAAGTTCCCTTTCCTGCCAATATTG___ATATTCGTGATACTGTAAAGTATAAAGAAGTAATGAAACA___ATATGGACTTGGAC MFLSAVFFAKSKSk|gsqdtcmpkalhrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16141 THSD4::NR2E3 ENSG00000187720.15::ENSG00000278570.5 OVK18 SRR8615880 SRR8670729 OVARY carcinoma (endometrioid_carcinoma) primary arriba TRUE TRUE TRUE 1555 FALSE NA FALSE NA THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71660734:+ chr15:71389291-72075722:+ chr15:71953073:+ NR2E3 ENSG00000278570.5 protein_coding + + chr15:71792638-71818259:+ chr15:71812336:+ chr15:72084977-72110600:+ chr15:72104676:+ chr15:71724262,chr15:71724263 chr15:71812161,chr15:71812159 NA NA chr15:72016601,chr15:72016602 chr15:72104501,chr15:72104499 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none ADAM-TS_Spacer_1(35%),Thrombospondin_type_1_domain(6%)|Ligand-binding_domain_of_nuclear_hormone_receptor(100%) ADAM_CR_3(100%),ADAM_spacer1(0%),TSP_1(0%)|Hormone_recep(100%) 45 37 6 180 111 ENST00000355327.7 ENST00000621736.4 downstream upstream duplicates(3),low_entropy(1),mismatches(9) AGGAGACAACACGGGCTGTCAGGTTGTGTCGGGCGTGTTTAAGCATGCCCTCACCAGCCTGGGCTACCACCGCGTCGTGGAGATTCCCGAGGGAGCCACGAAAATCAACATCACaGAGATGTACAAGAGCAACAACTATTTGG|CTGATGAGAATATTGATGTCACCAGCAATGACCCTGAGTTCCCCTCCTCTCCATACTCCTCTTCCTCCCCCTGCGGCCTGGACAGCATCCATGAGACCTCGGCTCGCCTACTCTTCATGGCCGTCAAGTGGGCCAAGAACCTGC GDNTGCQVVSGVFKHALTSLGYHRVVEIPEGATKINITEMYKSNNYL|aDENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16170 LINC-PINT::MKLN1 ENSG00000231721.8::ENSG00000128585.18 OVK18 SRR8615880 SRR8670729 OVARY carcinoma (endometrioid_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2818 TRUE 1073 LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130941413:- chr7:130476023-130794935:- chr7:130626172:- MKLN1 ENSG00000128585.18 protein_coding + + chr7:131110096-131496632:+ chr7:131375424:+ chr7:130794855-131181391:+ chr7:131060183:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Galactose_oxidase__central_domain(100%),Kelch_motif(100%),Muskelin_N-terminus(88%) |F5_F8_type_C(31%),Kelch_1(100%),Kelch_3(100%),Kelch_4(100%),Muskelin_N(33%) 0 1 1 13 718 ENST00000702906.1 ENST00000352689.11 upstream upstream none TTgAAAGgGAAAGCAGGGACCTTGAGGAAGGAATCGCCGTCATCTCATTGCCGACCTGCTTACTGTGCTGGGAAACAAA|GAACATTTTAGTGGACAAACCAAATGACCAATCTTCAAGATGGTCTTCAGAGAGCAACTATCCTCCCCAG___TACTTGATTCTAAAGCTCGAAAGGCCTGCTATAGTTCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16171 LINC-PINT::MKLN1 ENSG00000231721.8::ENSG00000128585.18 OVK18 SRR8615880 SRR8670729 OVARY carcinoma (endometrioid_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2818 TRUE 1073 LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130945720:- chr7:130476023-130794935:- chr7:130630479:- MKLN1 ENSG00000128585.18 protein_coding + + chr7:131110096-131496632:+ chr7:131375424:+ chr7:130794855-131181391:+ chr7:131060183:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Galactose_oxidase__central_domain(100%),Kelch_motif(100%),Muskelin_N-terminus(88%) |F5_F8_type_C(31%),Kelch_1(100%),Kelch_3(100%),Kelch_4(100%),Muskelin_N(33%) 1 0 1 80 718 ENST00000642963.1 ENST00000352689.11 upstream upstream none GTGAGTACCAGTGGAAGGAACGAGCCAGGAAGAGGGACTGGAACCATCTCAGAAGCCATGCCCCTCAGGCTGGAACTTGCCCTGTCTCCTCGCAGATGAG|GAACATTTTAGTGGACAAACCAAATGACCAATCTTCAAGATGGTCTTCAGAGAGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16193 CDKAL1::CASC15 ENSG00000145996.11::ENSG00000272168.10 OVK18 SRR8615880 SRR8670729 OVARY carcinoma (endometrioid_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20548705:+ chr6:20534688-21232635:+ chr6:20548936:+ CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:22110747:+ chr6:21664415-22654684:+ chr6:22110976:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Uncharacterized_protein_family_UPF0004(38%)| UPF0004(0%)| 1 0 0 123 197 ENST00000274695.8 ENST00000685576.1 downstream upstream none CAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAG|GAAGTTGAAGATTTGTCCAGGAGCAGATAGCTGAAGAGAGAGAGAGAGAAGAGAGAACGGCT GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKIT|gs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16209 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1558 TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7390073:+ chr6:7390026-7418270:+ chr6:7390306:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387175:- chr6:7326889-7389975:- chr6:7387408:- chr6:7390507,chr6:7390507,chr6:7390507,chr6:7390676,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7390507,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7392602,chr6:7392430,chr6:7392453,chr6:7392449,chr6:7392455,chr6:7392470,chr6:7390666,chr6:7395437,chr6:7397188 chr6:7388236,chr6:7388245,chr6:7388252,chr6:7389584,chr6:7387776,chr6:7387778,chr6:7387779,chr6:7387774,chr6:7387802,chr6:7387791,chr6:7387801,chr6:7388203,chr6:7388198,chr6:7387816,chr6:7387775,chr6:7387831,chr6:7387784,chr6:7387838,chr6:7387840,chr6:7388234,chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389978,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7389586,chr6:7389667,chr6:7389667 chr6:7389977,chr6:7389977,chr6:7389977,chr6:7389938,chr6:7389938 chr6:7389545,chr6:7389551,chr6:7389554,chr6:7389588,chr6:7389538 chr6:7390740,chr6:7390740,chr6:7390740,chr6:7390909,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7390740,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7392835,chr6:7392663,chr6:7392686,chr6:7392682,chr6:7392688,chr6:7392703,chr6:7390899,chr6:7395670,chr6:7397421 chr6:7388469,chr6:7388478,chr6:7388485,chr6:7389817,chr6:7388009,chr6:7388011,chr6:7388012,chr6:7388007,chr6:7388035,chr6:7388024,chr6:7388034,chr6:7388436,chr6:7388431,chr6:7388049,chr6:7388008,chr6:7388064,chr6:7388017,chr6:7388071,chr6:7388073,chr6:7388467,chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7390211,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7389819,chr6:7389900,chr6:7389900 chr6:7390210,chr6:7390210,chr6:7390210,chr6:7390171,chr6:7390171 chr6:7389778,chr6:7389784,chr6:7389787,chr6:7389821,chr6:7389771 sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Cancer-associated_gene_protein_1_family(100%) |CAGE1(100%) 6 1 12 708 56 ENST00000379834.7 ENST00000442019.6 downstream downstream duplicates(2),mismatches(2) GGATCTGTtGGTCCCGTTTTCCCGTCGCACGTGGTGGCCACTGTTGGCTTCTGAATGGTTTGCAAGGCGGATATCCACGCCAAGGCCTTTGGATCGGCCGTGGGTACATCCGTCTGAGCCGTTCCTTTCCATCGCAGAGCGGCGGCCTCCGGCGGCGCTCTCCAGTCATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGGGCAATTCGACGACGCGGACTCCTCTGACAG|TTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCTTTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAG___AACGAAATAAAGAATTTTGAAAGGGAAAATGAGT MDYRRLLMSRVVPGQFDDADSSDs|yeqglskilvitfrsctf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16210 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 1559 TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7390073:+ chr6:7390026-7418270:+ chr6:7390306:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387196:- chr6:7326889-7389975:- chr6:7387429:- chr6:7390507,chr6:7390507,chr6:7390507,chr6:7390676,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7390507,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7392602,chr6:7392430,chr6:7392453,chr6:7392449,chr6:7392455,chr6:7392470,chr6:7390666,chr6:7395437,chr6:7397188 chr6:7388236,chr6:7388245,chr6:7388252,chr6:7389584,chr6:7387776,chr6:7387778,chr6:7387779,chr6:7387774,chr6:7387802,chr6:7387791,chr6:7387801,chr6:7388203,chr6:7388198,chr6:7387816,chr6:7387775,chr6:7387831,chr6:7387784,chr6:7387838,chr6:7387840,chr6:7388234,chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389978,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7389586,chr6:7389667,chr6:7389667 chr6:7389977,chr6:7389977,chr6:7389977,chr6:7389938,chr6:7389938 chr6:7389545,chr6:7389551,chr6:7389554,chr6:7389588,chr6:7389538 chr6:7390740,chr6:7390740,chr6:7390740,chr6:7390909,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7390740,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7392835,chr6:7392663,chr6:7392686,chr6:7392682,chr6:7392688,chr6:7392703,chr6:7390899,chr6:7395670,chr6:7397421 chr6:7388469,chr6:7388478,chr6:7388485,chr6:7389817,chr6:7388009,chr6:7388011,chr6:7388012,chr6:7388007,chr6:7388035,chr6:7388024,chr6:7388034,chr6:7388436,chr6:7388431,chr6:7388049,chr6:7388008,chr6:7388064,chr6:7388017,chr6:7388071,chr6:7388073,chr6:7388467,chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7390211,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7389819,chr6:7389900,chr6:7389900 chr6:7390210,chr6:7390210,chr6:7390210,chr6:7390171,chr6:7390171 chr6:7389778,chr6:7389784,chr6:7389787,chr6:7389821,chr6:7389771 sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Cancer-associated_gene_protein_1_family(100%) |CAGE1(100%) 3 2 13 708 45 ENST00000379834.7 ENST00000512691.1 downstream downstream mismatches(2) TGGTGGATCTGTtGGTCCCGTTTTCCCGTCGCACGTGGTGGCCACTGTTGGCTTCTGAATGGTTTGCAAGGCGGATATCCACGCCAAGGCCTTTGGATCGGCCGTGGGTACATCCGTCTGAGCCGTTCCTTTCCATCGCAGAGCGGCGGCCTCCGGCGGCGCTCTCCAGTCATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGGGCAATTCGACGACGCGGACTCCTCTGACAG|AAGTCTTCTATTGTTCAACAGTTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCTTTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAGG...___AACGAAATAAAGAATTTTGAAAGGGAAAATGAGT MDYRRLLMSRVVPGQFDDADSSDr|slllfnsyeqglskilvitfrsctf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16211 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7390073:+ chr6:7390026-7418270:+ chr6:7390306:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7385872:- chr6:7326889-7389975:- chr6:7386105:- chr6:7390507,chr6:7390507,chr6:7390507,chr6:7390676,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7390507,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7392602,chr6:7392430,chr6:7392453,chr6:7392449,chr6:7392455,chr6:7392470,chr6:7390666,chr6:7395437,chr6:7397188 chr6:7388236,chr6:7388245,chr6:7388252,chr6:7389584,chr6:7387776,chr6:7387778,chr6:7387779,chr6:7387774,chr6:7387802,chr6:7387791,chr6:7387801,chr6:7388203,chr6:7388198,chr6:7387816,chr6:7387775,chr6:7387831,chr6:7387784,chr6:7387838,chr6:7387840,chr6:7388234,chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389978,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7389586,chr6:7389667,chr6:7389667 chr6:7389977,chr6:7389977,chr6:7389977,chr6:7389938,chr6:7389938 chr6:7389545,chr6:7389551,chr6:7389554,chr6:7389588,chr6:7389538 chr6:7390740,chr6:7390740,chr6:7390740,chr6:7390909,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7390740,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7392835,chr6:7392663,chr6:7392686,chr6:7392682,chr6:7392688,chr6:7392703,chr6:7390899,chr6:7395670,chr6:7397421 chr6:7388469,chr6:7388478,chr6:7388485,chr6:7389817,chr6:7388009,chr6:7388011,chr6:7388012,chr6:7388007,chr6:7388035,chr6:7388024,chr6:7388034,chr6:7388436,chr6:7388431,chr6:7388049,chr6:7388008,chr6:7388064,chr6:7388017,chr6:7388071,chr6:7388073,chr6:7388467,chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7390211,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7389819,chr6:7389900,chr6:7389900 chr6:7390210,chr6:7390210,chr6:7390210,chr6:7390171,chr6:7390171 chr6:7389778,chr6:7389784,chr6:7389787,chr6:7389821,chr6:7389771 sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Cancer-associated_gene_protein_1_family(92%) |CAGE1(91%) 1 0 4 708 58 ENST00000379834.7 ENST00000509324.1 downstream downstream mismatches(1) GGCAGGGTGGTGGATCTGTtGGTCCCGTTTTCCCGTCGCACGTGGTGGCCACTGTTGGCTTCTGAATGGTTTGCAAGGCGGATATCCACGCCAAGGCCTTTGGATCGGCCGTGGGTACATCCGTCTGAGCCGTTCCTTTCCATCGCAGAGCGGCGGCCTCCGGCGGCGCTCTCCAGTCATGGACTACCGGCGGCTTCTCATGAGCCGGGTGGTCCCCGGGCAATTCGACGACGCGGACTCCTCTGACAG|AACGAAATAAAGAATTTTGAAAGGGAAAATGAGTATGAATCCACACTTTGTGAAGATGCTTATGGCACACTAGACAATTTGTTAAATG___ACTGCAGTTCCTTCAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGAAGTCACAGCAGAG MDYRRLLMSRVVPGQFDDADSSDr|tk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16212 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7395143:+ chr6:7390026-7418270:+ chr6:7395376:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387175:- chr6:7326889-7389975:- chr6:7387408:- chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7395437,chr6:7397188 chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389667,chr6:7389667 NA NA chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7395670,chr6:7397421 chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389900,chr6:7389900 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Cancer-associated_gene_protein_1_family(100%) |CAGE1(100%) 1 0 1 496 56 ENST00000379834.7 ENST00000442019.6 downstream downstream none TAGAAGATGAGGAGGAGGAGGGTTATGACGATGATGATGATGACTGGGACTGGGATGAAGGAGTTGGAAAACTCGCCAAGGGTTATGTCTGGAATGGAGGAAGCAACCCACAG___GCAAATCGACAGACCTCCGACAGCAGTTCAGCCAAAATGTCTACTCCAGCAGA...TTACGGAAATTTGAGAATAAAATTAATTTAG|TTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGA LRKFENKINL|vMNKDYQKFWSSPSDPVHFEVDTSHEKVESMSES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16213 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7402715:+ chr6:7390026-7418270:+ chr6:7402948:+ CAGE1 ENSG00000164304.16 protein_coding - + chr6:7326656-7389742:- chr6:7389289:+ chr6:7326889-7389975:- chr6:7389522:+ chr6:7402889,chr6:7402888 chr6:7389191,chr6:7389187 NA NA chr6:7403122,chr6:7403121 chr6:7389424,chr6:7389420 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' low none RIO1_family(19%)| RIO1(4%)| 1 0 3 524 61 ENST00000379834.7 unknown downstream upstream none CTAATGTATACCATGCTAGCACAGCAAATGGAGAGAGCAGAGCAATCAAAATTTATAAAACTTCTATTTTGGTGTTCAAAGATCGGGATAAATATGTAAGTGGAGAATTCAG|GATCCATAGTTTCTTGGACCCACGCTACGGACCTGGCTCTCCCTCCCTCTGCACCGGGTTTTGTGGGAGGGAGAACGCTTTCCAACCTCCTCCACCAAGGACTCTCACAAACTCGCAATCGGGCTCCCGGAGTGCTGGAACGCCCCTGTGTGACGTCCGCCCGCGCCGG NVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFr|ihsfldprygpgspslctgfcgrenafqpppprtltnsqsgsrsagtplcdvrpr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16214 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7396772:+ chr6:7390026-7418270:+ chr6:7397005:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387175:- chr6:7326889-7389975:- chr6:7387408:- chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7397188 chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389667 NA NA chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7397421 chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389900 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site inversion low none |Cancer-associated_gene_protein_1_family(100%) |CAGE1(100%) 1 0 0 640 56 ENST00000379834.7 ENST00000442019.6 downstream downstream none GAAGCAACCgACAG___GCAAATCGACAGACCTCCGACAGCAGTTCAGCCAAAATGTCTACTCCAGCAGACAAGGTCTTACGGAAATTTGAGAATAAAATTAAT...ATTCCGTCATAAATAAAtTCACCtAAAAGTCTAGACAAAAGGAAGCAaATAT|TTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16215 RBMS1::MIR3681HG ENSG00000153250.21::ENSG00000224184.7 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2826 TRUE 1075 RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160493289:- chr2:161128662-161350318:- chr2:161349800:- MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12558206:+ chr2:11974052-12843039:+ chr2:12698332:+ chr2:160490517,chr2:160490520,chr2:160490522 chr2:12370738,chr2:12370735,chr2:12370735 NA NA chr2:161347028,chr2:161347031,chr2:161347033 chr2:12510864,chr2:12510861,chr2:12510861 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 6 9 3 110 31 ENST00000348849.8 ENST00000664018.1 upstream upstream mismatches(3) CGCCGCCGGAAAGGGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAG|GAGCCTTCATCTACCACATAAGAATTGCAGCAAACCCTGCAGCTATCCTGAAGCTGCCATGCTGAAAAGGCCAATTGGGAGACCACATAGAGACCGAGAGAGACTTCCAAGGACTCCAGCCAATCCTGGGCCCCAGCAGTTTGAATCTCCCAGCAATGCCACCATACAGGAGAGGGAGCAAATACTCAGAAGATTCAAGTGCCAGCTGCATGGGTTGATACCTACATAAAAGGCATTGG___CATTATTCACAAGAGCCAAGATATGGA MGKVWKQQMYPQYATYYYPQYLQAK|epsstt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16216 RBMS1::MIR3681HG ENSG00000153250.21::ENSG00000224184.7 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2826 TRUE 1075 RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160493289:- chr2:161128662-161350318:- chr2:161349800:- MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12397522:+ chr2:11974052-12843039:+ chr2:12537648:+ chr2:160490517,chr2:160490520,chr2:160490522 chr2:12370738,chr2:12370735,chr2:12370735 NA NA chr2:161347028,chr2:161347031,chr2:161347033 chr2:12510864,chr2:12510861,chr2:12510861 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 0 3 110 0 ENST00000348849.8 ENST00000654108.1 upstream upstream mismatches(2) GGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGGAAAGGGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAG|ATGAAGACGCTGAGGTTAAGAAACAAGTGACTGCTATGAGATCATAAAGAAAAT MGKVWKQQMYPQYATYYYPQYLQAK|mktlrlrnk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16217 RBMS1::MIR3681HG ENSG00000153250.21::ENSG00000224184.7 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 2826 TRUE 1075 RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160493289:- chr2:161128662-161350318:- chr2:161349800:- MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12416089:+ chr2:11974052-12843039:+ chr2:12556215:+ chr2:160490517,chr2:160490520,chr2:160490522 chr2:12370738,chr2:12370735,chr2:12370735 NA NA chr2:161347028,chr2:161347031,chr2:161347033 chr2:12510864,chr2:12510861,chr2:12510861 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 1 3 110 2 ENST00000348849.8 ENST00000412294.5 upstream upstream mismatches(2) GGTGGAGCAGCGGCAGCAGCAGCAGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGCCGGAAAGGGAGAGGCAGGAGAGCCCGAGACTTGGAAACCCCAAAGTGTCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGG?AACAGCAGATGTACCCTCAGTACGCCACCTACTATTACCCCCAGTATCTGCAAGCCAAG|AGTACTTCTCAGAAGTGAATGTCAACTTCCTGATGTTTATACTCAAGGAGAATGAGGTTTGGAGATCTGAGTAGTTTACTGA...AGAATTGCAGCAAACaCTGCAGCTATCCTGAAGCTGCCATGCTGAAAAGGCCAATTGGGAGACCACATAGAGACCGAGAGAGACTTCCAAGGACTCCAGCC MGKVW?QQMYPQYATYYYPQYLQAK|stsqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16219 BCAS3::STAT5B ENSG00000141376.24::ENSG00000173757.11 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60679540:+ chr17:58754814-59470199:+ chr17:58756901:+ STAT5B ENSG00000173757.11 protein_coding - - chr17:42199176-42288633:- chr17:42219842:- chr17:40351194-40440651:- chr17:40371860:- chr17:60683209,chr17:60683210 chr17:42221866,chr17:42221865 NA NA chr17:58760570,chr17:58760571 chr17:40373884,chr17:40373883 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |SH2_domain(100%),STAT_protein__DNA_binding_domain(100%),STAT_protein__all-alpha_domain(76%) |SH2(100%),STAT_alpha(23%),STAT_bind(100%) 3 0 1 27 79 ENST00000407086.8 ENST00000698777.1 downstream downstream none GCCTAGAGCTGGAGACTAGCGTTAACCGGCGGGGCGGCCG___GTTTTATGAATGAAGCTATGGCTACAGATTCCCCAAGAAGACCCAGTCGTTGTACTGGTGGAGTTGTGGTTCGCCCCCAGGCTGTCAC|CTCAGTTTGGCCCGCTGGCCCAGCTGAGCCCCCAGGAGCGTCTGAGCCGG MNEAMATDSPRRPSRCTGGVVVRPQAVt|svwpagpaeppgasep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 5B 1 Yes large granular lymphocytic leukaemia, skin basal cell, APL leukaemia_lymphoma, epithelial oncogene, TSG, fusion missense, other, translocation 16220 STAT5B::BCAS3 ENSG00000173757.11::ENSG00000141376.24 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAT5B ENSG00000173757.11 protein_coding - - chr17:42199176-42288633:- chr17:42223382:- chr17:40351194-40440651:- chr17:40375400:- BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60683982:+ chr17:58754814-59470199:+ chr17:58761343:+ chr17:42221871,chr17:42221874 chr17:60683212,chr17:60683209 NA NA chr17:40373889,chr17:40373892 chr17:58760573,chr17:58760570 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none STAT_protein__all-alpha_domain(23%),STAT_protein__protein_interaction_domain(100%)|Breast_carcinoma_amplified_sequence_3_(100%) STAT_alpha(2%),STAT_int(100%)|BCAS3(100%),WD40(100%) 2 2 0 67 24 ENST00000698777.1 ENST00000407086.8 upstream upstream none CCGCTGCCCCATGGAGCTGGTCCGCTGCATCCGCCATATATTGTACAATGAACAGAGGTTGGTCCGAGAAGCCAACAAT___CTCTCCAGCTGGAAGCCTTGCT...GAAACACCTCCAGATCAACCAGACGTTTGAGGAGCTGCGACTGGTCACGCAGGACACAGAGAATGAGTTAAAAAAGCTGCAGCAGACTCAGGAGTACTTCATCATCCAGTACCAGGAGAGCCTGAGGATCCAAG|AGAGCAGTCCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG___GCTTACAGTGGAACACCTCTAACAGAAGAAAAGGAGAAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATG___ATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAgTGAAC KHLQINQTFEELRLVTQDTENELKKLQQTQEYFIIQYQESLRIQ|essptwkvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 5B 1 Yes large granular lymphocytic leukaemia, skin basal cell, APL leukaemia_lymphoma, epithelial oncogene, TSG, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 16221 SORL1::ST8SIA4 ENSG00000137642.13::ENSG00000113532.13 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SORL1 ENSG00000137642.13 protein_coding + + chr11:121452314-121633763:+ chr11:121478243:+ chr11:121323023-121504472:+ chr11:121348952:+ ST8SIA4 ENSG00000113532.13 protein_coding - + chr5:100806933-100903282:- chr5:100895665:+ chr5:100142637-100238986:- chr5:100231369:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none Sortilin__neurotensin_receptor_3_(9%)| Sortilin-Vps10(11%)| 0 1 1 0 53 ENST00000260197.12 unknown downstream upstream none GCAGTGAT___GTGTACGTGTCTTACGACTATGGAAAATCATTCAAGAAAATTTCAGACAAGTTAAACTTTGGCTTGGGAAATAGGAGTGAAGCTGTTATCGCCCAGTTCTACCACAGCCCTGCGGAtAACcAGCGG|GACCAAAGAGGAATTGATTTTCCAACCTTCTACATTGTGCTGGAAGATTGAAGAGCCAGCCTTTCGAATGATTTTATCAGAGCTATTGACAAGTGACCGACTCAAAGACAATTCACCATCTCTGAAACAAAACAAAATTGCCAGCTTTGTGAAAGTAAG SDVYVSYDYGKSFKKISDKLNFGLGNRSEAVIAQFYHSPADNqR|dqrgidfptfyivled* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16261 DNMT1::KEAP1 ENSG00000130816.17::ENSG00000079999.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1560 FALSE NA FALSE NA DNMT1 ENSG00000130816.17 protein_coding - - chr19:10133342-10231286:- chr19:10162667:- chr19:10244018-10341962:- chr19:10273343:- KEAP1 ENSG00000079999.14 protein_coding - - chr19:10486125-10503558:- chr19:10486818:- chr19:10596801-10614234:- chr19:10597494:- chr19:10162546,chr19:10162617,chr19:10162548,chr19:10162548 chr19:10488920,chr19:10488764,chr19:10488919,chr19:10489067 NA NA chr19:10273222,chr19:10273293,chr19:10273224,chr19:10273224 chr19:10599596,chr19:10599440,chr19:10599595,chr19:10599743 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none DMAP1-binding_Domain(100%)|Kelch_motif(10%) 7TM_GPCR_Srsx(100%),7tm_1(100%),DMAP_binding(100%)|Kelch_1(2%),Kelch_2(3%),Kelch_3(4%),Kelch_4(2%),Kelch_6(3%) 174 105 76 1740 812 ENST00000340748.8 ENST00000171111.10 upstream downstream duplicates(48),mismatches(6) AGAAGCCAGGGCAGGCGTGCAGGCTGACGAGGACGAAGATGGAGACGAGAAA___GATGAGAAGAAGCACAGAAGTCAACCCAAAGATgT___AGCTGCCAAACGGAGGCCCGAAGAAAAAGAACCTGAAAAAGTAAATCCACAGATTTCTGATGAAAAAGACGAGGATGAAAAG|GAGGCTATGATGGTCACACGTTCCTGGACAGTGTGGAGTGTTACGACCCAGATACAGACACCTGGAGCGAGGTGACCCGAATGACATCGGGCCGGAGTGGGGTGGGCGTGGCTGTCACCATGGAGCCCTGCCGGAAGCAGATTGACCAGCAGAACTGTACCTGTTGAGGCACTTTTGTTTCTTGGGCAAAAAT EARAGVQADEDEDGDEKDEKKHRSQPKDvAAKRRPEEKEPEKVNPQISDEKDEDEK|eammvtrswtvwsvttqiqtpgar* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE kelch like ECH associated protein 1 1 Yes NSCLC, breast carcinoma epithelial TSG missense, nonsense, frameshift 16262 RANBP1::TANGO2 ENSG00000099901.18::ENSG00000183597.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1561 FALSE NA FALSE NA RANBP1 ENSG00000099901.18 protein_coding + + chr22:20115938-20127355:+ chr22:20119149:+ chr22:20103461-20114878:+ chr22:20106672:+ TANGO2 ENSG00000183597.16 protein_coding + + chr22:20017014-20067164:+ chr22:20063338:+ chr22:20004537-20054687:+ chr22:20050861:+ chr22:20121598,chr22:20121598 chr22:20062265,chr22:20062263 NA NA chr22:20109121,chr22:20109121 chr22:20049788,chr22:20049786 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RanBP1_domain(11%)|Transport_and_Golgi_organisation_2(21%) Ran_BP1(0%)|TANGO2(4%) 77 68 108 2148 587 ENST00000402752.5 ENST00000401886.5 downstream upstream duplicates(23),mismatches(21),multimappers(3) GCTACGAGTAGCCGCCGAGAGGCCGCGGAGCCAGCGACGACCGACCCAGCCGAGCCGCCGCCGCCGCCGCGCCCCCATGGCGGCCGCCAAG___GACACTCATGAGGACCATGATACTTCCACTGAGAATACAGACGAGTCCAACCATGACCCTCAGTTTGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAAGAAGATGAAGAGGAACTTTTTAAAAT|GCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAG___AACCAACACTATCATCCTGGTAGAgGCGGACGGCCACGTGACCTTCACTGAGCGTAGCATGATGGACAAGGACC MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKm|QLPDPAIEDQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVeADGHVTFTERSMMDKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16263 PSMD3::PPP1R1B ENSG00000108344.15::ENSG00000131771.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSMD3 ENSG00000108344.15 protein_coding + + chr17:39980807-39997959:+ chr17:39990197:+ chr17:38137060-38154212:+ chr17:38146450:+ PPP1R1B ENSG00000131771.14 protein_coding + + chr17:39626740-39636626:+ chr17:39627306:+ chr17:37782993-37792879:+ chr17:37783559:+ chr17:39992222 chr17:39627156 NA NA chr17:38148475 chr17:37783409 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none |Protein_phosphatase_inhibitor_1/DARPP-32(100%) |DARPP-32(100%) 88 95 68 1076 546 ENST00000264639.9 ENST00000580825.5 downstream upstream duplicates(9),low_entropy(2),mismatches(10) ACCAGGCTGAGAAGCTGGTGTCCAAGTCTGTGTTCCCAGAGCAGGCCAACAACAATGAGTGGGCCAGGTACCTCTACTACACAG___GGCGAATCAAAGCCATCCAGCTGGAGTACTCAGAGGCCCGGAGAACGATGACCAACGCCCTTCGCAAGGCCCCTCAGCACACAGCTGTCGGCTTCAAACAGACG|CCCGCCGCCTGCGCGGGGGAGCCCAGCACAGACCGCCGCCGGGACCCCGAGTCGCGCACCCCAGCCCCACCGCCCACCCCGCGCGCCATGGACCCCAAGGACCGCAAGAAGATCCAGTTCTCGGTGCCCGCGCCCCCTAGCCAGCTCGACCCCCGCCAGGTGGAGATG___ATCCGGCGCAGGAGACCAACGCCTG QAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQT|paacagepstdrrrdpesrtpappptpraMDPKDRKKIQFSVPAPPSQLDPRQVEMIRRRRPTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16264 DNAJB6::ABLIM1 ENSG00000105993.15::ENSG00000099204.22 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157363270:+ chr7:157128075-157210133:+ chr7:157155964:+ ABLIM1 ENSG00000099204.22 protein_coding - + chr10:114431112-114768061:- chr10:114670519:+ chr10:116190871-116527820:- chr10:116430278:+ chr7:157364701 chr10:114667533 NA NA chr7:157157395 chr10:116427292 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none DnaJ_domain(88%)| DnaJ(59%),SRR(100%)| 61 56 92 3619 365 ENST00000262177.9 unknown downstream upstream duplicates(23),mismatches(43),multimappers(10) CCTCG___GACCCATTCCAACAATCTCGTAAAACATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCACCCGAGGATATTAAAAAGGC___ATATCGGAAACTGGCACTGAAGTGGCATCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGAGAAAATTCAAGCAAGTAGCGGAGGCATATGAAGTGCTGTCGGATG|ACAGGGTCTTGCTCCCTCATCCAGGAGTGCAGCAACTCGATCTTGGCTCACTGCAACCTCCGACTCCCGGCTCAAGAAATCCTCCCACCTCAGCCTCCCGAGTAGCTGATACTACAGGCATGTGCCACCACGCCCAGCTAATTTTTGTATTTTTTTGTAGACATGGAGTTTCACCATATTACCCAGGCTGGTCTTGAACTCCTGGGCCCAAGCG MVDYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSD|drvllphpgvqqldlgslqpptpgsrnpptsasrvadttgmchhaqlifvffcrhgvspyypgws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16265 SMYD3::ZNF695 ENSG00000185420.19::ENSG00000197472.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1562 FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246507054:- chr1:245912644-246670614:- chr1:246670356:- ZNF695 ENSG00000197472.15 protein_coding - - chr1:246945547-247008093:- chr1:246945827:- chr1:247108849-247171395:- chr1:247109129:- chr1:246476358,chr1:246476361,chr1:246476361 chr1:246952565,chr1:246952565,chr1:246952559 NA NA chr1:246639660,chr1:246639663,chr1:246639663 chr1:247115867,chr1:247115867,chr1:247115861 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none MYND_finger(17%),SET_domain(26%)| SET(0%),zf-MYND(0%)| 86 35 40 384 192 ENST00000490107.6 ENST00000487338.6 upstream downstream duplicates(12),inconsistently_clipped(1),low_entropy(1),mismatches(6) TGAGACGCCCGCTGCTGGACGCGGGTAGCCGTCTGAGGTGCCGGAGCTGCGGGAGGATGGAGCCGCTGAAGGTGGAAAAGTTCGCAACCGCCAAcAGGGGAAACGGGCTGCGCGCCGTGACCCCGCTGCGCCCCGGAGAGCTACTCTTCCGCTCGGATCCCTTGGCGTACACGGTGTGCAAGGGGAGTCGTGGCGTCGTCTGCGACCGCTGCCTTCTCGG|GGTCCAGTCGTCGACCATCGAGCTGCTTTGAAGACCCTGCGGAGGTTCCGTCGCTGCTTGAACACAGTGCCTGGACTCCCTGCTCCGTGAGGCGAATTTACACCGGGTCCAGCTGgGTCAGCCCGAGTTCTGAATTAAAACATGCCT MEPLKVEKFATAnRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLg|VQSSTIELL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Oral_cavity exact TRUE Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Esophageal carcinoma HEAD_AND_NECK,BLADDER,OESOPHAGUS no_match 246670356|246670356,246670356,246670356|246670356 TRUE|TRUE,TRUE,TRUE|TRUE 247131094|247109129,247109129,247131094|247109129 FALSE|TRUE,TRUE,FALSE|TRUE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 246507054 TRUE 246967792 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16266 SMYD3::ZNF670-ZNF695 ENSG00000185420.19::ENSG00000135747.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246507054:- chr1:245912644-246670614:- chr1:246670356:- ZNF670-ZNF695 ENSG00000135747.11 protein_coding - - chr1:246945547-247078811:- chr1:246945827:- chr1:247108849-247242113:- chr1:247109129:- chr1:246476358,chr1:246476361,chr1:246476361 chr1:246952565,chr1:246952565,chr1:246952559 NA NA chr1:246639660,chr1:246639663,chr1:246639663 chr1:247115867,chr1:247115867,chr1:247115861 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none MYND_finger(17%),SET_domain(26%)| SET(0%),zf-MYND(0%)| 86 35 40 384 192 ENST00000490107.6 ENST00000465049.6 upstream downstream duplicates(12),inconsistently_clipped(1),low_entropy(1),mismatches(6) TGAGACGCCCGCTGCTGGACGCGGGTAGCCGTCTGAGGTGCCGGAGCTGCGGGAGGATGGAGCCGCTGAAGGTGGAAAAGTTCGCAACCGCCAAcAGGGGAAACGGGCTGCGCGCCGTGACCCCGCTGCGCCCCGGAGAGCTACTCTTCCGCTCGGATCCCTTGGCGTACACGGTGTGCAAGGGGAGTCGTGGCGTCGTCTGCGACCGCTGCCTTCTCGG|GGTCCAGTCGTCGACCATCGAGCTGCTTTGAAGACCCTGCGGAGGTTCCGTCGCTGCTTGAACACAGTGCCTGGACTCCCTGCTCCGTGAGGCGAATTTACACCGGGTCCAGCTGgGTCAGCCCGAGTTCTGAATTAAAACATGCCT MEPLKVEKFATAnRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLg|vqsstiell* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS no_match 246507054|246507054 TRUE|TRUE 246967792|246945827 FALSE|TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16267 CDCA4::JAG2 ENSG00000170779.11::ENSG00000184916.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 1563 FALSE NA FALSE NA CDCA4 ENSG00000170779.11 protein_coding - - chr14:105009573-105021083:- chr14:105020999:- chr14:105475910-105487420:- chr14:105487336:- JAG2 ENSG00000184916.9 protein_coding - - chr14:105140982-105168824:- chr14:105149320:- chr14:105607319-105635161:- chr14:105615657:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |EGF-like_domain(59%),Human_growth_factor-like_EGF(51%) |EGF(57%),hEGF(60%) 6 118 3 430 678 ENST00000336219.4 ENST00000347004.2 upstream downstream duplicates(1),mismatches(5) CTCCTTCCTCAGCGGCGGGAAGCTGGCGGCAGCGGCGGTGGCGGTGGCTGAGCAGAGGACCCGGCGGGCGGCCTCGCGGGTCAG|GTGGATGTCGACCTTTGTGAGCCAAGCCCCTGCCGGAACGGCGCTCGCTGCTATAACCTGGAGGGTGACTATTACTGCGCCTGCCCTGATGACTTTGGTGGCAAGAACTGCTCCGTGCCCCGCGAGCCGTGCCCTGGCGGGGCCTGCAGAG___TGATCGATGGCTGCGGGTCAGACGCGGGGCCTGGGATGCCTGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16268 PRRC2B::PLPP7 ENSG00000288701.1::ENSG00000160539.6 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1564 TRUE 2833 FALSE NA PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131447804:+ chr9:134249023-134375584:+ chr9:134323191:+ PLPP7 ENSG00000160539.6 protein_coding + + chr9:131289459-131359022:+ chr9:131307923:+ chr9:134164846-134234409:+ chr9:134183310:+ chr9:131448561,chr9:131448560,chr9:131448561 chr9:131293824,chr9:131293824,chr9:131293822 NA NA chr9:134323948,chr9:134323947,chr9:134323948 chr9:134169211,chr9:134169211,chr9:134169209 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BAT2_N-terminus(100%)|PAP2_superfamily(94%) BAT2_N(100%)|PAP2(1%) 14 47 56 678 214 ENST00000684596.1 ENST00000372264.4 downstream upstream duplicates(6),mismatches(12) GGCTCTTTTCCCCTTCCTCAGCTCCGCCTTGAACCTCGAGTTCCTTTTAGACAGTTCCAGATGAATGACCAAGACGG___AAAAGAAAACAGGCTGGGATTGTCTCGCCCACTCCGCCCACTAAGGCAGCTGGTGGAGCGGGCACCACGGCCCACCATTATCAATGCGGAAAACCTGAAGGGCCTTGACGATCTGGACGCCGATGCCGATGATGGCTGGGCAG|CCCTGCTCCTGGACATCATGACGGTGGCCGGCGTGCAGAAGCTCATCAAGCGGCGCGGCCCGTACGAGACGAGCCCCAGCCTCCTGGACTACCTCACCATGGACATCTACGCCTTCCCGGCCGGGCACGCCAGCCGCGCCGCCATGGTGTCCAAGTTCTTCCTCAGCCACCTGGTGCTGGCGGTGCCCCTGCGTGTGCTGCTGGTGCTCTGGGCCCTCTGCGTGGGCCTGTCCCGCGTGATGATCGGCCGCCACCACGTCACGGACGTCCTCTCCGGCTTTG GSFPLPQLRLEPRVPFRQFQMNDQDGKENRLGLSRPLRPLRQLVERAPRPTIINAENLKGLDDLDADADDGWA|aLLLDIMTVAGVQKLIKRRGPYETSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHVTDVLSGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16272 RBM14::PACS1 ENSG00000239306.5::ENSG00000175115.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2834 FALSE NA RBM14 ENSG00000239306.5 protein_coding + + chr11:66616626-66629934:+ chr11:66625678:+ chr11:66384097-66397405:+ chr11:66393149:+ PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66216119:+ chr11:65837743-66012215:+ chr11:65983590:+ chr11:66626751,chr11:66626752,chr11:66626749 chr11:66215181,chr11:66214874,chr11:66215176 NA NA chr11:66394222,chr11:66394223,chr11:66394220 chr11:65982652,chr11:65982345,chr11:65982647 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(99%)|PACS-1_cytosolic_sorting_protein(100%) RRM_1(30%),RRM_5(91%)|Pacs-1(100%) 0 1 3 555 716 ENST00000310137.5 ENST00000320580.9 downstream upstream none GCCAGGCAATGCCTACGATGGGGCAGGTCAGCCGTCTGCAGCCTACCTGTCCATGTCCCAGGGGGCCGTTGCCAACGCCAACAGCACCCCGCCGCCCTATGAGCGTACCCGCCTCTCCCCACCCCGGGCCAGCTACGACGATCCCTACAAAAAGGCTGTCGCCATGTCGAAAAG|GTGATGCAGCATCCTAATGAAGGCGCACTGGTGCTTGGCCTACACAGCAACGTGAAGGATGTCTCTGTGCCTGTGGCAGAAATAAAGATCTACTCCCTGTCCAGCCAACCCATTGACCATGAAGGAATCAAATCCAAGCTTTCTG___ATCGTTCTCCTGATATTGACAATTATTCTGAGGAAGAGGAAGAGAGTTTCTCATCAGAAC PGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYDDPYKKAVAMSKr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16273 ZFAS1::STAU1 ENSG00000177410.13::ENSG00000124214.21 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAS1 ENSG00000177410.13 lncRNA + + chr20:49278178-49299600:+ chr20:49279208:+ chr20:47894715-47916137:+ chr20:47895745:+ STAU1 ENSG00000124214.21 protein_coding - + chr20:49113339-49188367:- chr20:49167573:+ chr20:47729876-47804904:- chr20:47784110:+ chr20:49279953 chr20:49161928 NA NA chr20:47896490 chr20:47778465 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 48 24 13 6787 50 ENST00000620594.2 unknown downstream upstream duplicates(9),mismatches(5) tCGGAGTGTGGTACTTCTCCTAGTTGCAGTCAGGCTTCATACGCTATTGTCCTGCCC___GTTAGAGCAGCCAGCGGGTACAGAATGGATTTTGGAAGAGGGAGTCACCACTGGACCTCCAAGGAAGCCACGTGCAGACATCTACAACCTTCGATCTCCTGACGA|AATCAGAACAAAATAACAGAGGCGTTCCATTGAAGATCTACATAATGGTCTTAGAAGACAAGTCGCCAGTGTCAAGAAACAAGTCCAGAACCATTCAGAAGTCAGCTATGACCTTATTTCATTGGGTTTTTTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16274 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1567 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35025855:- chr5:34998206-35048240:- chr5:35025960:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Aminotransferase_class-III(51%) |Aminotran_3(66%) 18 13 40 363 103 ENST00000618457.5 ENST00000618015.4 upstream downstream duplicates(7),mismappers(2),mismatches(1) CACCGGGCTGGGGACCGGGGAGCGGAGGCTGAAATCCCCAGACGCCGGTTTTCTGGGCTGGGCTTTCTGCCTTACTCACTCCTTCTCCCTCTTTCTGGATTTTACCGACCGTTCGCGAAACAGCTTTCCACACAATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA|GGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAAAGGAAGCCTTTGAGCTGGTGCGAGCAAGGGGAGGCGTGTGCATTGCAGATGAA___GTGCAGACAGGATTTGGA...___GTGATTAAAGAAGAAAATCTACAGGAAAACAGTCAAGAAGTTGGGACCTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16275 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1568 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35026510:- chr5:34998206-35048240:- chr5:35026615:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Aminotransferase_class-III(59%) |Aminotran_3(68%) 7 8 46 363 39 ENST00000618457.5 ENST00000618015.4 upstream downstream duplicates(10),mismatches(2) CCACCGGGCTGGGGACCGGGGAGCGGAGGCTGAAATCCCCAGACGCCGGTTTTCTGGGCTGGGCTTTCTGCCTTACTCACTCCTTCTCCCTCTTTCTGGATTTTACCGACCGTTCGCGAAACAGCTTTCCACACAATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA|ACTGCTGCCAAGCTAAAGATCAGTATATTGAGCAATTCAAAGATACGCTGAGCACATCTGTGGCCAAGTCAATTGCTGGATTTTTCGCAGAACCTATTCAA___GGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAAAGGAAGCCTTTGAGCTGGTGCGAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16276 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1569 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35014119:- chr5:34998206-35048240:- chr5:35014224:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Aminotransferase_class-III(43%) |Aminotran_3(37%) 9 4 18 363 103 ENST00000618457.5 ENST00000231420.11 upstream downstream duplicates(4),mismatches(1) CTGGGGACCGGGGAGCGGAGGCTGAAATCCCCAGACGCCGGTTTTCTGGGCTGGGCTTTCTGCCTTACTCACTCCTTCTCCCTCTTTCTGGATTTTACCGACCGTTCGCGAAACAGCTTTCCACACAATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA|GTGCAGACAGGATTTGGAAGGTTGGGCTCTCACTTCTGGGGCTTCCAAACCCACGATGTCCTGCCTGACATTGTCACCATGGCTAAAGGGATTGGGAATGGCTTTCCCATGGCAGCAGTCATAACCACTCCAG___AGATTGCCAAATCTTTGGCGAAATGCCTGCAGCACTTCAACACCTTTGGAGGGAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16277 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1570 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35195551:- chr5:35048861-35230589:- chr5:35195653:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35026510:- chr5:34998206-35048240:- chr5:35026615:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Aminotransferase_class-III(59%) |Aminotran_3(68%) 2 3 55 60 39 ENST00000515839.1 ENST00000618015.4 upstream downstream duplicates(9),mismatches(2) AGAGGAGGATG___...AATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA___GTTGTAAAAGGATGACTGCGTAGAGCCACAGCATTCTCCTTGTCAGTGTAGGAAATGCAGAGGAGGAT[g]TTACCTCCGGCACTTGCCTCTAAGACACCTAATAAAGATGAGGAAGGCTCCAGCCTGAAGCGTGGGTGAGGTGTCCAGCTGCCCAAAGGCGACAG|ACTGCTGCCAAGCTAAAGATCAGTATATTGAGCAATTCAAAGATACGCTGAGCACATCTGTGGCCAAGTCAATTGCTGGATTTTTCGCAGAACCTATTCAA___GGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAAAGGAAGCCTTTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16278 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35195103:- chr5:35048861-35230589:- chr5:35195205:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35025855:- chr5:34998206-35048240:- chr5:35025960:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Aminotransferase_class-III(51%) |Aminotran_3(66%) 1 2 49 16 103 ENST00000509839.5 ENST00000618015.4 upstream downstream duplicates(6),mismatches(1) GACAGACCAGTCCTTGGAGTGAACTGGGAGACAAGGAGGCTGCTTTGGCATGGAGCTGAGAACATCTCTAGATCGCACTGGAAGGCAGAGAGAGGCCAGACAGGGAACTCTGAAGAGCTGCCACAGCCTGTGCCAGGGTGACATCAGG|GGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAAAGGAAGCCTTTGAGCTGGTGCGAGCAAGGGGAGGCGTGTGCATTGCAGATGAA___GTGCAGACAGGATTTGGA...___GTGATTAAAGAAGAAAATCTACAGGAAAACAGTCAAGAAGTTGGGACCTACATGTTACTAAAGTTTGCTAAGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16279 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1571 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35010149:- chr5:34998206-35048240:- chr5:35010254:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Aminotransferase_class-III(26%) |Aminotran_3(28%) 9 4 7 363 150 ENST00000618457.5 ENST00000618015.4 upstream downstream duplicates(1),low_entropy(1) TGGGGACCGGGGAGCGGAGGCTGAAATCCCCAGACGCCGGTTTTCTGGGCTGGGCTTTCTGCCTTACTCACTCCTTCTCCCTCTTTCTGGATTTTACCGACCGTTCGCGAAACAGCTTTCCACACAATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA|GTGATTAAAGAAGAAAATCTACAGGAAAACAGTCAAGAAGTTGGGACCTACATGTTACTAAAGTTTGCTAAGCTGCGGGATGAATTTGAAATTGTTGGAGACGTCCGAGGCAAAGGcCTCATGATAGGCATAGAAATGGTGCAGGATAAG___ATAAGCTGTCGGCCTCTTCCCCGTGAAGAAGTAAATCAGATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16280 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35195551:- chr5:35048861-35230589:- chr5:35195653:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35025855:- chr5:34998206-35048240:- chr5:35025960:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Aminotransferase_class-III(51%) |Aminotran_3(66%) 0 2 48 60 103 ENST00000515839.1 ENST00000618015.4 upstream downstream duplicates(6),mismatches(1) CGCGAAACAGCTTTCCACACAATGGAGCTTCATGTCCTCGTGCAGGAAGTACTCATCGACTGATGTGGCAGACTTTGCTCCCTGGCAAAA___GTTGTAAAAGGATGACTGCGTAGAGCCACAGCATTCTCCTTGTCAGTGTAGGAAATGCAGAGGAGGAT[g]TTACCTCCGGCACTTGCCTCTAAGACACCTAATAAAGATGAGGAAGGCTCCAGCCTGAAGCGTGGGTGAGGTGTCCAGCTGCCCAAAGGCGACAG|GGTGTGAATGGAGTTGTCCAGTACCCAAAGGGGTTTCTAAAGGAAGCCTTTGAGCTGGTGCGAGCAAGGGGAGGCGTGTGCATTGCAGATGAA___GTGCAGACAGGATTTGGA...___GTGATTAAAGAAGAAAATCTACAGGAAAACAGTCAAGAAGTTGGGACCTACATGTTACTAAAGTTTGCTAAGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16281 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35195103:- chr5:35048861-35230589:- chr5:35195205:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35014119:- chr5:34998206-35048240:- chr5:35014224:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Aminotransferase_class-III(43%) |Aminotran_3(37%) 0 1 24 16 103 ENST00000509839.5 ENST00000231420.11 upstream downstream duplicates(4),mismatches(1) GACAGACCAGTCCTTGGAGTGAACTGGGAGACAAGGAGGCTGCTTTGGCATGGAGCTGAGAACATCTCTAGATCGCACTGGAAGGCAGAGAGAGGCCAGACAGGGAACTCTGAAGAGCTGCCACAGCCTGTGCCAGGGTGACATCAGG|GTGCAGACAGGATTTGGAAGGTTGGGCTCTCACTTCTGGGGCTTCCAAACCCACGATGTCCTGCCTGACATTGTCACCATGGCTAAAGGGATTGGGAATGGCTTTCCCATGGCAGCAGTCATAACCACTCCAG___AGATTGCCAAATCTTTGGCGAAATt unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16283 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1572 TRUE 2836 TRUE 1077 ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72375872:- chr10:74127098-74385889:- chr10:74135630:- chr10:72199182,chr10:72199187,chr10:72111849 chr10:72392761,chr10:72392763,chr10:72495522 NA NA chr10:73958940,chr10:73958945,chr10:73871607 chr10:74152519,chr10:74152521,chr10:74255280 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none KH_domain(71%)|EF-hand_domain_pair(100%) KH_1(53%)|EF-hand_8(82%) 9 13 37 1516 840 ENST00000672957.1 ENST00000361114.10 upstream downstream duplicates(5),mismatches(1) GAGGACTTCTATCAAG___GCTCCATGGAGTGTGCTGATGAGCCCTGTGATGCCTACGAGGTGGAGCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTATAA___GCATATAGTTGGAAAGAGAGGGGACACTAGGAAGAAAATAGAAATGGAGACCAAAACTTCTATTAGCATTCCTAAACCTGGACAAGACGGGGAAATTG|TGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATG___GCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGGCCT EDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEI|vTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus exact TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 TRUE,TRUE,TRUE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16284 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2836 TRUE 1077 ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72379583:- chr10:74127098-74385889:- chr10:74139341:- chr10:72199182,chr10:72199187,chr10:72111849 chr10:72392761,chr10:72392763,chr10:72495522 NA NA chr10:73958940,chr10:73958945,chr10:73871607 chr10:74152519,chr10:74152521,chr10:74255280 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none KH_domain(71%)|EF-hand_domain_pair(100%) KH_1(53%)|EF-hand_8(82%) 1 1 37 1516 7 ENST00000672957.1 ENST00000476605.7 upstream downstream duplicates(2),mismatches(1) GTGATGCCTACGAGGTGGAGCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTATAA___GCATATAGTTGGAAAGAGAGGGGACACTAGGAAGAAAATAGAAATGGAGACCAAAACTTCTATTAGCATTCCTAAACCTGGACAAGACGGGGAAATTG|GAAAGGGCACCATCTTCATGGGGAGAAGATGAGTACTTGAAATATCAAGACAATTGCAG DAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEI|gkgtifmgrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus exact TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16285 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2836 TRUE 1077 ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72210732:- chr10:73855790-73976892:- chr10:73970490:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72375872:- chr10:74127098-74385889:- chr10:74135630:- chr10:72199182,chr10:72199187,chr10:72111849 chr10:72392761,chr10:72392763,chr10:72495522 NA NA chr10:73958940,chr10:73958945,chr10:73871607 chr10:74152519,chr10:74152521,chr10:74255280 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none KH_domain(13%)|EF-hand_domain_pair(100%) KH_1(0%)|EF-hand_8(82%) 0 1 22 1789 840 ENST00000672957.1 ENST00000361114.10 upstream downstream mismatches(1) CCGGAATTACAGGAAGAATCCAGTCCAAGAACAGACCTATCAACATGAAGAAGATGAAGAGGACTTCTATCAAG___GCTCCATGGAGTGTGCTGATGAGCCCTGTGATGCCTACGAGGTGGAGCAGACCCCACAAGGATTCCGGTCTACTTTGAGGGCCCCCAGCTTGCTCTATAA|TGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATG___GCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGGCCTGGAA RNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYn|dhaaggqdsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus exact TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 TRUE,TRUE,TRUE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16287 PSPC1::TOGARAM2 ENSG00000121390.19::ENSG00000189350.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2837 TRUE 1078 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19730239:- chr13:20248892-20357159:- chr13:20304379:- TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28994725:+ chr2:29179477-29275096:+ chr2:29217591:+ chr13:19678911,chr13:19678914 chr2:28994558,chr2:28994555 NA NA chr13:20253051,chr13:20253054 chr2:29217424,chr2:29217421 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|CLASP_N_terminal(100%) NOPS(100%),RRM_1(100%)|CLASP_N(100%) 23 22 11 772 66 ENST00000471658.5 ENST00000379558.5 upstream upstream duplicates(4),mismatches(3) GAAGAACTCAGACGCTTGGAAGAACTCAGAAACCAAGAGTTGCAAAAACGGAAGCAAATACAACTAAG___ACATGAAGAGGAGCATCGGCGGCGTGAGGAAGAAATGATCCGACACAGAGAACAGGAGGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT|GTCCCGGATGTTACAGGTCAGAGCCCTCCAGACCCCCAAGGACTGTACTCACTGCCCAGAAATAGCTGCTGCCTCTGGGCAACCTTGTAGGCACCTTCTCCACCCAGGACATGGGCACCCGTGACGATGTCCCCGAAG___CCAAGGTCCTGGTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAGTGCTGGGCCCCGGGTGCTCCCGCCTGGAAGCATCAACTCCAGTCTGCCTCATGGAGAAG___GTTCTCTCCAGCCTGAGCCAAGAGCCCTGCTG EELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMEN|vpdvtgqsppdpqglyslprnscclwatl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16288 PSPC1::TOGARAM2 ENSG00000121390.19::ENSG00000189350.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2837 TRUE 1078 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19699380:- chr13:20248892-20357159:- chr13:20273520:- TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28994725:+ chr2:29179477-29275096:+ chr2:29217591:+ chr13:19678911,chr13:19678914 chr2:28994558,chr2:28994555 NA NA chr13:20253051,chr13:20253054 chr2:29217424,chr2:29217421 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site translocation high none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|CLASP_N_terminal(100%) NOPS(100%),RRM_1(100%)|CLASP_N(100%) 1 0 13 3 66 ENST00000635562.1 ENST00000379558.5 upstream upstream mismatches(1) GGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT___TATGTCTGCCATTTCCTAA|GTCCCGGATGTTACAGGTCAGAGCCCTCCAGACCCCCAAGGACTGTACTCACTGCCCAGAAATAGCTGCTGCCTCTGGGCAACCTTGTAGGCACCTTCTCCACCCAGGACATGGGCACCCGTGACGATGTCCCCGAAG___CCAAGGTCCTGGTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAGTGCTGGGCCCCGGGTGCTCCCGCCTGGAAGCATCAACTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16289 PSPC1::TOGARAM2 ENSG00000121390.19::ENSG00000189350.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2837 TRUE 1078 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19705662:- chr13:20248892-20357159:- chr13:20279802:- TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28994725:+ chr2:29179477-29275096:+ chr2:29217591:+ chr13:19678911,chr13:19678914 chr2:28994558,chr2:28994555 NA NA chr13:20253051,chr13:20253054 chr2:29217424,chr2:29217421 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|CLASP_N_terminal(100%) NOPS(100%),RRM_1(100%)|CLASP_N(100%) 1 0 13 748 66 ENST00000338910.9 ENST00000379558.5 upstream upstream mismatches(2) GTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG___ATGCGTTTAGCCCAGCCCCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGCAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCCGCAAATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTG|GTCCCGGATGTTACAGGTCAGAGCCCTCCAGACCCCCAAGGACTGTACTCACTGCCCAGAAATAGCTGCTGCCTCTGGGCAACCTTGTAGGCACCTTCTCCACCCAGGACATGGGCACCCGTGACGATGTCCCCGAAG___CCAAGGTCCTGGTCCCCGTGGCCGTGTACTGCGGGAGCATCCCTCGGACCAGTGCTGGGCCCCGGGTGCTCCCGCCTGGAAGCATCAACTCCAG DMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPEGAANMGTPMMPDNGAV|vpdvtgqsppdpqglyslprnscclwatl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16290 MEGF6::TP73 ENSG00000162591.17::ENSG00000078900.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEGF6 ENSG00000162591.17 protein_coding - - chr1:3487951-3611508:- chr1:3514550:- chr1:3404515-3528072:- chr1:3431114:- TP73 ENSG00000078900.15 protein_coding + - chr1:3652516-3736201:+ chr1:3716018:- chr1:3569080-3652765:+ chr1:3632582:- chr1:3513893,chr1:3513898 chr1:3725037,chr1:3725039 NA NA chr1:3430457,chr1:3430462 chr1:3641601,chr1:3641603 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Calcium-binding_EGF_domain(0%),Coagulation_Factor_Xa_inhibitory_site(66%)| EGF_CA(96%),FXa_inhibition(75%),cEGF(2%),hEGF(11%)| 13 17 25 838 277 ENST00000356575.9 unknown upstream downstream duplicates(3),mismappers(2),mismatches(4) CGCTGCCAGTGCCGGCCCGGGTTCCAGCTCCAGGAGGACGGCAGGCATTGTGTCC___GTAGAAGCCCGTGTGCCAACAGGAACGGCAGCTGCATGCACAGGTGCCAGGTGGTCCGGGGCCTCGCCCGCTGTGAGTGCCACGTGGGCTATCAGCTAGCAGCGGACGGCAAGGCCTGTGAAG|GTGAGCAGGAGCCACACGGGGGACTCTCAACGGCCTGGAAGCGCGGCTCCCTGGGAGACACTGAGTGCACCCAGACCACAGGAGCTGGAGCCTGCTCGATCCTCGTCCCATGCACGGCTGCCTCTAGGGATCTCCATCCTGGGCTATGATCGGGGTAGGGGAGGGAAGCAGG RCQCRPGFQLQEDGRHCVRRSPCANRNGSCMHRCQVVRGLARCECHVGYQLAADGKACE|geqephgglstawkrgslgdtectqttgagacsilvpctaasrdlhpgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-551a chr1:3560695-3560790:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16291 NAA15::SETD7 ENSG00000164134.14::ENSG00000145391.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAA15 ENSG00000164134.14 protein_coding + + chr4:139301446-139420033:+ chr4:139301831:+ chr4:140222600-140341187:+ chr4:140222985:+ SETD7 ENSG00000145391.14 protein_coding - + chr4:139495941-139606699:- chr4:139538353:+ chr4:140417095-140527853:- chr4:140459507:+ chr4:139327527,chr4:139327525 chr4:139538125,chr4:139538120 NA NA chr4:140248681,chr4:140248679 chr4:140459279,chr4:140459274 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 21 14 19 198 74 ENST00000296543.10 unknown downstream upstream duplicates(9),mismappers(9),mismatches(9) ACGGAGACCCGTAGTGGGGGAGGCGGCGGCAGCGTTAAGTGAGAAAGGAAAAAAGACAACGAGGAAAAAGGAGGTGTCCGGGTAGGGCAACGCGGCGACACCCGAGGCCTGGTGGTGGCGGCGGATCGAGATATTCAAGGCTGAAGCAGCTACGGAACGGCAGCGGCGGCGGTCGGACAAACTGACTGACCGAGCCGGGTGGTGGCGGGAGCAGCGGGAGCAGCCGGAACGATGCCGGCCGTGAGCCTCCCGCCCAAGGAGAATGCGCTCTTCAAGCGGATCTTG|ATGAAGTCTTGCTGTCGCCTAGGCTGGAATACAGTGGTGCAATCTCGGCTTGCTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGTGTGCCACCAAACCTGGTTAATGTTTGTATTTTTAGTAGAGATGCCTTTC...TGTTGGCTAAGC MPAVSLPPKENALFKRIL|mksccrlgwntvvqsrlaatstswvqaillpqppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16292 SRC::RBL1 ENSG00000197122.13::ENSG00000080839.12 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRC ENSG00000197122.13 protein_coding + + chr20:37344685-37406050:+ chr20:37386174:+ chr20:35973088-36034453:+ chr20:36014577:+ RBL1 ENSG00000080839.12 protein_coding - + chr20:36996349-37095997:- chr20:37094343:+ chr20:35624752-35724400:- chr20:35722746:+ chr20:37392318,chr20:37392317 chr20:37078120,chr20:37078116 NA NA chr20:36020721,chr20:36020720 chr20:35706523,chr20:35706519 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none SH3_domain(51%)| SH3_1(1%),SH3_2(1%),SH3_9(1%)| 12 30 10 293 76 ENST00000692112.1 unknown downstream upstream duplicates(3),mismatches(1) GCTTCAACTCCTCGGACACCGTCACCTCCCCGCAGAGGGCGGGCCCGCTGGCCG___GTGGAGTGACCACCTTTGTGGCCCTCTATGACTATGAGTCTAGGACGGAGACAGACCTGTCCTTCAAGAAAGGCGAGCGGCTCCAGATTGTCAACAACAC|CTCTCCAGTCATGCCACCCACGGATGTGGACCATTGTCCTTTACCCAGTCTATCCAGTTCTGAAGACACTTTTTTCAG___AGCCAGACACTGATGCAAAGCATCAGGACGATGCTCTGACGGAGGAGGAAACGTAGGGCTGAGATCAGCTTCGTGTGCACATTGGCTTTGATCAAACTGCTGCACAGCGACCGGCAGCTCCACCCTGGTGAAGCAGAGGGTGGAGGTTAAACGGCTCAGACCCTGGGTCTGGCTCCATCTCTAACCGTGTGACCTTGGGCCTGTAGCTTAACCCGTCTAGGGCTCCGCTTCCTCTTGCGTGAAATGGGG FNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNt|spvmpptdvdhcplpslsssedtffrarh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Proto-oncogene tyrosine-protein kinase Src TK Src P12931 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SRC proto-oncogene, non-receptor tyrosine kinase 1 Yes colorectal cancer, endometrial carcinoma epithelial oncogene missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 16293 NAP1L4::GPBP1 ENSG00000205531.14::ENSG00000062194.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1573 FALSE NA FALSE NA NAP1L4 ENSG00000205531.14 protein_coding - - chr11:2944431-2992377:- chr11:2951259:- chr11:2965661-3013607:- chr11:2972489:- GPBP1 ENSG00000062194.16 protein_coding + + chr5:57173948-57264679:+ chr5:57230846:+ chr5:56469775-56560506:+ chr5:56526673:+ chr11:2950025,chr11:2950031 chr5:57223310,chr5:57223304 NA NA chr11:2971255,chr11:2971261 chr5:56519137,chr5:56519131 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Nucleosome_assembly_protein_(NAP)(100%)|Vascular_protein_family_Vasculin-like_1(100%) NAP(100%)|Vasculin(100%) 17 14 14 1707 1047 ENST00000620138.4 ENST00000424459.7 upstream upstream duplicates(5),mismatches(6) TCTGAATTCACATTAGCCTCTGATTTTGAAATTGGACACTTTTTCCGTGAGCGGATAGTCCCGCGGGCTGTGCTGTACTTCACTGGGGAGGCCATAGAAGATGATGACAAT___TTTGAAGAAGGTGAAGAAGGAGAAGAGGAG___GAATTAGAAGGTGACGAGGAGGGAGAAGACGAGGATGATGCGGAAATTAACCCCAAG|TCGTCATTGAATTTTGAGAAGCATTCTGAAAACTTTGCATGGACAGAGAATCGTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGCTTTGATTCTGCTATTGGaCGTCCTAATGGAG___GTAACTTTGGAAGGAAAGAAAAAAATGGATGGCGTACACATGGAAGAAA SEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDAEINPK|SSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRPNGGNFGRKEKNGWRTHGR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16294 KALRN::MYLK ENSG00000160145.16::ENSG00000065534.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KALRN ENSG00000160145.16 protein_coding + + chr3:124033369-124726325:+ chr3:124033813:+ chr3:123752216-124445172:+ chr3:123752660:+ MYLK ENSG00000065534.20 protein_coding - + chr3:123610049-123884332:- chr3:123811014:+ chr3:123328896-123603179:- chr3:123529861:+ chr3:124039571,chr3:124039571 chr3:123794450,chr3:123794447 NA NA chr3:123758418,chr3:123758418 chr3:123513297,chr3:123513294 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 34 7 47 96 ENST00000682506.1 unknown downstream upstream duplicates(2),mismappers(1) CCGCGCCCTCCGCCCACCGGGCGCCGAGCAGCCCTCGGCCCCAGGCTTCTTCGGCTCCCGGCTGCCCGCGGACGCCCTCCCACAGTCATGAACCCCCCTGAGGGAGCAGCGGAGGAAGGAGGAGCAGCAGACTCGGACGTGGACGCCTTTTTCCGGACAG|CCCTAAATCTCTTCTAGAATGGGGCTAACTGGAAAGAAATGGTGACCTCTGAGAACCTGGAGAAGGTATGGAAAAAACCAATGATCAACTGAGAGCACAGCCCATCAGCAGGAACACAAAGAGGAACTTCTGCTCGGAGGTGTCAGCTCAGCTGGTTTCCAGTGGAGAGGAGAAA MNPPEGAAEEGGAADSDVDAFFRT|alnlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE HCG2039851 CAMK Trio O60229 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16295 PRMT7::SLC7A6 ENSG00000132600.18::ENSG00000103064.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2838 TRUE 1079 PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68324832:+ chr16:68344854-68394755:+ chr16:68358735:+ SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68274691:+ chr16:68298419-68335726:+ chr16:68308594:+ chr16:68326458,chr16:68326405,chr16:68326454 chr16:68270282,chr16:68269925,chr16:68270275 NA NA chr16:68360361,chr16:68360308,chr16:68360357 chr16:68304185,chr16:68303828,chr16:68304178 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none Ribosomal_protein_L11_methyltransferase_(PrmA)(50%)|Amino_acid_permease(100%) PrmA(0%)|AA_permease(100%),AA_permease_2(100%) 16 13 12 263 312 ENST00000687654.1 ENST00000618043.4 downstream upstream duplicates(2),mismatches(3) ACAAAGACAGA___AATGTAAAATACTACCAAGGTATCCGGGCTGCCGTGAGCAGGGTGAAGGACAGAGGACAGAAGGCCTTGGTTCTCGACATTGGCACTGGCACGGGACTCTTGTCAATGATGGCGGTCACAGCAGGTGCCGACTTCTGCTATGCCATCGAG|GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAGGGAGCCTGGGAGGCCCACACCCACCTACCATCTTGTCCCTAACACCAGCCAGTCCCAGGTGGAAGAAGATGTCAGCTCGCCACCTCAAAGGTCCTCCGAAACTATGCAGCTGAAGAAGGAGATCTCCCTGCTGAATGGGGTCAGCCTGGTGGTGGGCA KDRNVKYYQGIRAAVSRVKDRGQKALVLDIGTGTGLLSMMAVTAGADFCYAIE|atantgvqepfvMEAREPGRPTPTYHLVPNTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16296 PRMT7::SLC7A6 ENSG00000132600.18::ENSG00000103064.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2838 TRUE 1079 PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68324832:+ chr16:68344854-68394755:+ chr16:68358735:+ SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68273818:+ chr16:68298419-68335726:+ chr16:68307721:+ chr16:68326458,chr16:68326405,chr16:68326454 chr16:68270282,chr16:68269925,chr16:68270275 NA NA chr16:68360361,chr16:68360308,chr16:68360357 chr16:68304185,chr16:68303828,chr16:68304178 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Ribosomal_protein_L11_methyltransferase_(PrmA)(50%)|Amino_acid_permease(100%) PrmA(0%)|AA_permease(100%),AA_permease_2(100%) 0 5 15 263 58 ENST00000687654.1 ENST00000648130.1 downstream upstream duplicates(1) GCTGGAGGAGGATGAACACTATGATTACCACCAGGAGATTGCAAG___...CAGATATGCTACATGACAAAGACAGA___AATGTAAAATACTACCAAGGTATCCGGGCTGCCGTGAGCAGGGTGAAGGACAGAGGACAGAAGGCCTTGGTTCTCGACATTGGCACTGGCACGGGACTCTTGTCAATGATGGCGGTCACAGCAGGTGCCGACTTCTGCTATGCCATCGAG|GCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGACTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTGGGGATTACAG___GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAG DMLHDKDRNVKYYQGIRAAVSRVKDRGQKALVLDIGTGTGLLSMMAVTAGADFCYAIE|ava* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16297 PRMT7::SLC7A6 ENSG00000132600.18::ENSG00000103064.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2838 TRUE 1079 PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68324832:+ chr16:68344854-68394755:+ chr16:68358735:+ SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68273795:+ chr16:68298419-68335726:+ chr16:68307698:+ chr16:68326458,chr16:68326405,chr16:68326454 chr16:68270282,chr16:68269925,chr16:68270275 NA NA chr16:68360361,chr16:68360308,chr16:68360357 chr16:68304185,chr16:68303828,chr16:68304178 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Ribosomal_protein_L11_methyltransferase_(PrmA)(50%)|Amino_acid_permease(100%) PrmA(0%)|AA_permease(100%),AA_permease_2(100%) 1 0 15 263 49 ENST00000687654.1 ENST00000568024.1 downstream upstream duplicates(1) GGAGATTGCAAG___...CAGATATGCTACATGACAAAGACAGA___AATGTAAAATACTACCAAGGTATCCGGGCTGCCGTGAGCAGGGTGAAGGACAGAGGACAGAAGGCCTTGGTTCTCGACATTGGCACTGGCACGGGACTCTTGTCAATGATGGCGGTCACAGCAGGTGCCGACTTCTGCTATGCCATCGAG|ACCAAGTCTTGCTCTGTTGCCAGGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGACTCCCTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTGGGGATTACAG___GCCACAGCAAACACAGGTGTGCAGGAACCGTTTGTCATGGAAGCCAGGGAGCCTGGGAGGCCCACACCCACCTACCAT DMLHDKDRNVKYYQGIRAAVSRVKDRGQKALVLDIGTGTGLLSMMAVTAGADFCYAIE|tkscsvarqwrdlgslqpptpwfkrfsclsllsgdyrpqqtqvcrnrlswkpgslggphppt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16298 ARFIP1::FHDC1 ENSG00000164144.16::ENSG00000137460.10 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARFIP1 ENSG00000164144.16 protein_coding + + chr4:152779937-152918463:+ chr4:152829726:+ chr4:153701089-153839615:+ chr4:153750878:+ FHDC1 ENSG00000137460.10 protein_coding + + chr4:152936323-152979671:+ chr4:152964485:+ chr4:153857475-153900823:+ chr4:153885637:+ chr4:152841504,chr4:152841504,chr4:152841502 chr4:152964467,chr4:152964462,chr4:152964457 NA NA chr4:153762656,chr4:153762656,chr4:153762654 chr4:153885619,chr4:153885614,chr4:153885609 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none Arfaptin-like_domain(0%)|Formin_Homology_2_Domain(30%) Arfaptin(0%)|FH2(27%) 11 16 13 154 93 ENST00000451320.6 ENST00000511601.6 downstream upstream mismappers(2),mismatches(1) GGTTGAGAGGTCGCCGGTCCGACTGTCCTCGGCGGTTGGTCAGTGTGAATTTGTGACAGCTGCAGTTGCTCCCCGCCCCCGAGCAGCCGAG___GAGTCTACCATGGCTCAAGAATCTCCCAAAAATTCAGCAGCAGAAATTCCAGTGACTAGTAATGGAGAAGTTGATGACTCTCGTGAACATAGCTTTAATAGG|GTGAAGAATCCAAACACTGCCATGGCTCCTGTACCTTCTGATTAAACTCTGTTTGCAAACTGGTTTAACAGCTGAAGG...___GAAGCCCAAAAGAAAGATACCATTCTTCTAAACTTTTCAGAAAAATTGCATCATGTTCAGAAGACTGCTAG___ATTATCTCTGGAGAACACGGAGGCAGAACTGCACTTGCTGTTT MAQESPKNSAAEIPVTSNGEVDDSREHSFNR|vknpntamapvpsd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 152781286|152815795 FALSE|FALSE 152955542|152955542 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16299 AXIN1::LMF1 ENSG00000103126.15::ENSG00000103227.19 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1574 FALSE NA FALSE NA AXIN1 ENSG00000103126.15 protein_coding - - chr16:287440-352723:- chr16:304304:- chr16:337440-402723:- chr16:354304:- LMF1 ENSG00000103227.19 protein_coding - - chr16:853634-981318:- chr16:854706:- chr16:903634-1031318:- chr16:904706:- chr16:298831 chr16:864875 NA NA chr16:348831 chr16:914875 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Axin-1_tankyrase_binding_domain(100%),Regulator_of_G_protein_signaling_domain(100%)|Lipase_maturation_factor(11%) AXIN1_TNKS_BD(100%),RGS(100%)|LMF1(0%) 13 9 17 377 118 ENST00000262320.8 ENST00000262301.16 upstream downstream duplicates(3) AGCAGCAGAGCCTGTCCAGCGATGCAGACACCCTGTCCCTCACGGACAGCAGCGT___GGATGGGATCCCCCCATACAGGATCCGTAAGCAGCACCGCAGGGAGATGCAGGAGAGCGTGCAGGTCAATGGGCGGGTGCCCCTACCTCACATTCCC___CGCACGTACCGGGTGCCGAAGGAGGTCCGCGTGGAGCCTCAGAAGTTCGCGGAGGAGCTCATCCACCGCCTGGAGGCTGTGCAGCGCACGCGGGAGGCCGAGGAGAAGCTGGAGGAGCGGCTGAAGCGCGTGCGCATG|GTGGGTCCGAGGAGAGCACTACAGGTACAAGTTCAGCCGTCCTGGGGGCAGGCACGCCGCCGAGGGCAAGTGGTGGGTGCGGAAGAGGATCGGAGCCTACTTCCCTCCGCTCAGCCTGGAGGAGCTGAGGCCCTACTTCAGGGACCGTGGGTGGCCTCTGCCCGGGCCCCTCTAGACGTGCACCAGAAATAAAGGCGAAGACCCAGCCCCTCGGCG QQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIPRTYRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRM|vgprralqvqvqpswgqarrrgqvvgaeedrsllpsaqpggaeallqgpwvasarapldvhqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE axin 1 1 Yes colorectal, endometrial, prostate, hepatocellular carcinoma, hepatoblastoma, sporadic medulloblastoma epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 16302 RASA2::PXYLP1 ENSG00000155903.14::ENSG00000155893.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1576 TRUE 2840 TRUE 1080 RASA2 ENSG00000155903.14 protein_coding + + chr3:141487027-141615344:+ chr3:141586752:+ chr3:141205869-141334186:+ chr3:141305594:+ PXYLP1 ENSG00000155893.13 protein_coding + + chr3:141228726-141367753:+ chr3:141278342:+ chr3:140947568-141086595:+ chr3:140997184:+ chr3:141607308,chr3:141607305 chr3:141274551,chr3:141274545 NA NA chr3:141326150,chr3:141326147 chr3:140993393,chr3:140993387 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none C2_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%),PH_domain(37%)|Histidine_phosphatase_superfamily_(branch_2)(100%) C2(100%),PH(2%),RasGAP(100%)|His_Phos_2(100%) 10 13 12 151 109 ENST00000286364.9 ENST00000637579.1 downstream upstream duplicates(2),mismatches(2) TAGCAGTTAAAAAG___TTCTTGGATGAAATTTCATCTACTGAAACTAAAGAGTCCAGTGGTACGAGTGAGCCTGTGCACCTGAAAGAAGG___TGAGATGTATAAAAGAGCTCAAGGAAGAACTCGGATTGGAAAAAAGAATTTTAAGAAACGATGGTTCTGCTTAACAAGCAGAGAGCTCACCTACCACAAACAGCCAG|TCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAGTAGCAAGAGTCGAAAGAGAATCATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAG___GTCATGCCCCGCATCATTTTAAGCTGGT AVKKFLDEISSTETKESSGTSEPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTSRELTYHKQP|vHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYCNIPSVAERSMEGHAPHHFKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16303 RASA2::PXYLP1 ENSG00000155903.14::ENSG00000155893.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2840 TRUE 1080 RASA2 ENSG00000155903.14 protein_coding + + chr3:141487027-141615344:+ chr3:141586755:+ chr3:141205869-141334186:+ chr3:141305597:+ PXYLP1 ENSG00000155893.13 protein_coding + + chr3:141228726-141367753:+ chr3:141278342:+ chr3:140947568-141086595:+ chr3:140997184:+ chr3:141607308,chr3:141607305 chr3:141274551,chr3:141274545 NA NA chr3:141326150,chr3:141326147 chr3:140993393,chr3:140993387 NA NA sense sense in-frame exon/splice-site CDS/splice-site duplication high none C2_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%),PH_domain(37%)|Histidine_phosphatase_superfamily_(branch_2)(100%) C2(100%),PH(2%),RasGAP(100%)|His_Phos_2(100%) 3 3 12 151 109 ENST00000286364.9 ENST00000637579.1 downstream upstream none CCAAAAGCAAG___TCAAGTTTCAAAGAGACATTCATGTGTGAATTTTTCAAAATGTTTCAAGAAGAAGGATATATTATAGCAGTTAAAAAG___TTCTTGGATGAAATTTCATCTACTGAAACTAAAGAGTCCAGTGGTACGAGTGAGCCTGTGCACCTGAAAGAAGG___TGAGATGTATAAAAGAGCTCAAGGAAGAACTCGGATTGGAAAAAAGAATTTTAAGAAACGATGGTTCTGCTTAACAAGCAGAGAGCTCACCTACCACAAACAGCCAGGTA|TCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAGTAGCAAGAGTCGAAAGAGAATCATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAG___GTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGTTCATTCG KSKSSFKETFMCEFFKMFQEEGYIIAVKKFLDEISSTETKESSGTSEPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTSRELTYHKQPg|iHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYCNIPSVAERSMEGHAPHHFKLVSVHVFI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16304 RAB11FIP3::TUBB3 ENSG00000090565.17::ENSG00000258947.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1577 TRUE 2841 TRUE 1081 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471389:+ chr16:475649-573011:+ chr16:521389:+ TUBB3 ENSG00000258947.8 protein_coding + + chr16:89921392-89938761:+ chr16:89932571:+ chr16:89987800-90005169:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Tubulin/FtsZ_family__GTPase_domain(93%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 9 14 11 392 1239 ENST00000262305.9 ENST00000555576.5 downstream upstream duplicates(1),mismatches(2) GAAGGACTTAACTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATGAG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCAGGCCTGACAATTTCATCTTTG KDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYE|FWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16305 RAB11FIP3::TUBB3 ENSG00000090565.17::ENSG00000258947.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2841 TRUE 1081 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:475098:+ chr16:475649-573011:+ chr16:525098:+ TUBB3 ENSG00000258947.8 protein_coding + + chr16:89921392-89938761:+ chr16:89932571:+ chr16:89987800-90005169:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Tubulin/FtsZ_family__GTPase_domain(93%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 2 1 11 15 1239 ENST00000452814.5 ENST00000555576.5 downstream upstream none CTCCAGGTGAGCGCACAGGCTTTGCAGAAACCCCAGCATGACAAGCAAGTAGGAAGGTGACATTGTTGTTTGAGAAAAGCCAGTGACCCGGTTGGGACGGA...CCGGTCTCCAACAGCATGCCCTTCCTGAAGGTGTGTACAGAGCCAGGCCCAGCCTGTGAGGCCACCCGGGCCAGCATCTGAGG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16306 RAB11FIP3::TUBB3 ENSG00000090565.17::ENSG00000258947.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2841 TRUE 1081 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:475045:+ chr16:475649-573011:+ chr16:525045:+ TUBB3 ENSG00000258947.8 protein_coding + + chr16:89921392-89938761:+ chr16:89932571:+ chr16:89987800-90005169:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Tubulin/FtsZ_family__GTPase_domain(93%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 1 0 11 17 1239 ENST00000450428.5 ENST00000555576.5 downstream upstream none CTCCAGGTGAGCGCACAGGCTTTGCAGAAACCCCAGCATGACAAGCAAGTAGGAAGGTGACATTGTTGTTTGAGAAAAGCCAGTGACCCGGTTGGGACGGAGACACGATGGGGAGCCGGTCTCCAACAGCATGCCCTTCCTGAAG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCA MPFLK|FWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16307 RAB11FIP3::ENSG00000198211 ENSG00000090565.17::ENSG00000198211.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2842 TRUE 1082 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471389:+ chr16:475649-573011:+ chr16:521389:+ ENSG00000198211 ENSG00000198211.8 protein_coding + + chr16:89919165-89936092:+ chr16:89932571:+ chr16:89985573-90002500:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Tubulin/FtsZ_family__GTPase_domain(98%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 9 14 11 392 1239 ENST00000262305.9 ENST00000556922.1 downstream upstream duplicates(1),mismatches(2) GAAGGACTTAACTAAGTACTTGGATCCCAGTGGGCTCGGCGTGATCAGCTTTGAAGACTTCTACCAAGGGATCACAGCCATCAGAAACGGAG___ATCCTGATGGCCAGTGCTACGGTGGTGTCGCTTCTGCCCAAGATGAGGAGCCCCTGGCCTGCCCGGACGAGTTCGATGACTTCGTCACCTATGAG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCAGGCCTGACAATTTCATCTTTG KDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYE|FWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16308 RAB11FIP3::ENSG00000198211 ENSG00000090565.17::ENSG00000198211.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2842 TRUE 1082 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:475098:+ chr16:475649-573011:+ chr16:525098:+ ENSG00000198211 ENSG00000198211.8 protein_coding + + chr16:89919165-89936092:+ chr16:89932571:+ chr16:89985573-90002500:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Tubulin/FtsZ_family__GTPase_domain(98%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 2 1 11 15 1239 ENST00000452814.5 ENST00000556922.1 downstream upstream none CTCCAGGTGAGCGCACAGGCTTTGCAGAAACCCCAGCATGACAAGCAAGTAGGAAGGTGACATTGTTGTTTGAGAAAAGCCAGTGACCCGGTTGGGACGGA...CCGGTCTCCAACAGCATGCCCTTCCTGAAGGTGTGTACAGAGCCAGGCCCAGCCTGTGAGGCCACCCGGGCCAGCATCTGAGG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16309 RAB11FIP3::ENSG00000198211 ENSG00000090565.17::ENSG00000198211.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2842 TRUE 1082 RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:475045:+ chr16:475649-573011:+ chr16:525045:+ ENSG00000198211 ENSG00000198211.8 protein_coding + + chr16:89919165-89936092:+ chr16:89932571:+ chr16:89985573-90002500:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Tubulin/FtsZ_family__GTPase_domain(98%),Tubulin_C-terminal_domain(100%) EF-hand_5(100%)|Misat_Tub_SegII(9%),Tubulin(33%),Tubulin_C(100%) 1 0 11 17 1239 ENST00000450428.5 ENST00000556922.1 downstream upstream none CTCCAGGTGAGCGCACAGGCTTTGCAGAAACCCCAGCATGACAAGCAAGTAGGAAGGTGACATTGTTGTTTGAGAAAAGCCAGTGACCCGGTTGGGACGGAGACACGATGGGGAGCCGGTCTCCAACAGCATGCCCTTCCTGAAG|TTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTT___CTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCA MPFLK|FWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16313 RRBP1::OVOL2 ENSG00000125844.17::ENSG00000125850.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 1578 TRUE 2844 TRUE 1083 RRBP1 ENSG00000125844.17 protein_coding - - chr20:17613678-17682295:- chr20:17682028:- chr20:17594323-17662940:- chr20:17662673:- OVOL2 ENSG00000125850.11 protein_coding - - chr20:17956979-18059188:- chr20:18024952:- chr20:17937623-18039832:- chr20:18005596:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Zinc_finger__C2H2_type(100%) |PDDEXK_1(100%),zf-C2H2(77%),zf-met(100%) 12 8 11 1054 218 ENST00000360807.8 ENST00000278780.7 upstream downstream duplicates(3),mismatches(7) GAAAGTGCCACGACTCCACACGCGCGCACGCAGCCAGCGAGCGGCCGGAGCGGACGGCAGACGGGGCGGGCGGCGTCAGGGTCGCAGCGTCTACAGCTGCTCGGGGGCGGTTTCTTGGCGGAGGCTTGGCCGGCTCCTCTCTCCCGGCTCCGCGGCGGCTGCGAAGGCGGCGGCTCCTGCCCTCTCGCTTTCCCTCTCGCGTCTCTGGCTGCAG|GCATTCGTCCCTACAAATGCAACGTCTGCAATAAAGCCTTCACCCAGCGCTGCTCTCTGGAGTCCCACCTGAAGAAAATCCATGGGGTGCAGCAGCAGTATGCCTATAAGCAGCGGCGGGACAAGCTCTACGTCTGCGAGGATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGTACCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 17639241|17639250 FALSE|FALSE 18005596|18005596 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16314 RRBP1::OVOL2 ENSG00000125844.17::ENSG00000125850.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 1579 TRUE 2844 TRUE 1083 RRBP1 ENSG00000125844.17 protein_coding - - chr20:17613678-17682295:- chr20:17679999:- chr20:17594323-17662940:- chr20:17660644:- OVOL2 ENSG00000125850.11 protein_coding - - chr20:17956979-18059188:- chr20:18024952:- chr20:17937623-18039832:- chr20:18005596:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Zinc_finger__C2H2_type(100%) |PDDEXK_1(100%),zf-C2H2(77%),zf-met(100%) 5 10 13 430 218 ENST00000377807.6 ENST00000278780.7 upstream downstream duplicates(3),mismatches(6) CTCGCGTCTCTGGCTGCAG___AAAGAAGCTTCCGGTTCTGAGGTCCTGGAGGTGCCATTTCCCTCTCTGTTGAAGCAAAGGCCGGGGCAGACCTCCTA|GCATTCGTCCCTACAAATGCAACGTCTGCAATAAAGCCTTCACCCAGCGCTGCTCTCTGGAGTCCCACCTGAAGAAAATCCATGGGGTGCAGCAGCAGTATGCCTATAAGCAGCGGCGGGACAAGCTCTACGTCTGCGAGGATTGCGGCTACACGGGCCCCACCCAGGAGGACCTGTACCTGCACGTGAACAGTGCCCATCCGGGCAGCTCGTTTCTCAAAAAGACATCTAAAAAACTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 17639241|17639250 FALSE|FALSE 18005596|18005596 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16315 MBP::ZNF516 ENSG00000197971.16::ENSG00000101493.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBP ENSG00000197971.16 protein_coding - - chr18:76978827-77133683:- chr18:77066298:- chr18:74690783-74845639:- chr18:74778254:- ZNF516 ENSG00000101493.11 protein_coding - + chr18:76357682-76495242:- chr18:76425744:+ chr18:74069637-74207198:- chr18:74137700:+ chr18:77056679,chr18:77056681 chr18:76423050,chr18:76423048 NA NA chr18:74768635,chr18:74768637 chr18:74135006,chr18:74135004 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 4 11 13 108 28 ENST00000355994.7 unknown upstream upstream none CGCAGGCAAACGAGAATTAAATGCCGAGAAGGCCAGTACG___AATAGTGAAACTAACAGAGGAGAATCTGAAAAAAAGAGAAACCTGGGTGAACTTTCACGGACAACCTCAGAGGACAACGAAGTGTTCG|GGTCCCACAAAGCAAATGAAATGTGATGGACCCATGCGGCACTCAAGTCACTGACAACCCACGAGGGGTCGAGGTCCAG___AAAGAAAGAAGGACAGTTGTTGAACCTCTGTGCCCAGCCGCATGACTGCAGCCTGGCCTTCCTCACAGCCAGCGCACCAGCACGGACAGCCAGCCAGCCTCCAAGCACGTGCTCAGCAAACACCTTACAGCAAAAGCCTCAGTGCGCCTGGTGACAGTGGAAAGAAGATGGGCTCTGAGGACGGGGCTGCTGGGCGGCAGGGAGGCAGCCAGCG AGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVF|gshkanem* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16319 CORO7::VPS13D ENSG00000262246.6::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2846 TRUE 1084 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4412356:- chr16:4404543-4475706:- chr16:4462357:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(92%),WD40(0%)|VPS13_C(0%) 9 3 14 128 399 ENST00000537233.6 ENST00000620676.6 upstream upstream duplicates(3),mismatches(3) CAGCGGGAGTCGCGGTTGCTCAGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCATGCAGGAACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAG MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|vcwniirwlreddgqsasvragvhqvpcshkw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16320 CORO7::VPS13D ENSG00000262246.6::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1580 TRUE 2846 TRUE 1084 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4416459:- chr16:4404543-4475706:- chr16:4466460:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(14%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(1%)|VPS13_C(0%) 6 8 7 195 399 ENST00000571227.5 ENST00000620676.6 upstream upstream duplicates(2),mismatches(1) GCCGAGGCAGCGGGAGTCGCGGTTGCTCAGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGG MNRFRVSKFRHTEARPPRRE|FAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16321 CORO7::VPS13D ENSG00000262246.6::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2846 TRUE 1084 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4413308:- chr16:4404543-4475706:- chr16:4463309:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(40%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(71%)|VPS13_C(0%) 1 0 9 172 399 ENST00000251166.9 ENST00000620676.6 upstream upstream duplicates(2),mismatches(1) CTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCA...AACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGG NHIKSSCSLIAFNSDRP|vcwniirwlreddgqsasvragvhqvpcshkw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16322 CORO7-PAM16::VPS13D ENSG00000103426.12::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2847 TRUE 1085 CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4412356:- chr16:4390252-4470495:- chr16:4462357:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(5%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(85%),WD40(0%)|VPS13_C(0%) 9 3 14 128 399 ENST00000575334.5 ENST00000620676.6 upstream upstream duplicates(3),mismatches(3) CAGCGGGAGTCGCGGTTGCTCAGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCATGCAGGAACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG___GTGTACTGGGCATTGTGCCTCTGCAAGGCCAAGGAGAGGACAAGCGACGCGTGGCCCACCTGGGCTGCCATTCAG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAG MNRFRVSKFRHTEARPPRRESWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHS|vcwniirwlreddgqsasvragvhqvpcshkw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16323 CORO7-PAM16::VPS13D ENSG00000103426.12::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2847 TRUE 1085 CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4416459:- chr16:4390252-4470495:- chr16:4466460:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(14%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(1%)|VPS13_C(0%) 6 8 7 195 399 ENST00000575334.5 ENST00000620676.6 upstream upstream duplicates(2),mismatches(1) GCCGAGGCAGCGGGAGTCGCGGTTGCTCAGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGG MNRFRVSKFRHTEARPPRRE|FAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16324 CORO7-PAM16::VPS13D ENSG00000103426.12::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2847 TRUE 1085 CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4413308:- chr16:4390252-4470495:- chr16:4463309:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF1899)(40%)|Vacuolar-sorting-associated_13_protein_C-terminal(12%) DUF1899(66%)|VPS13_C(0%) 1 0 9 172 399 ENST00000575334.5 ENST00000620676.6 upstream upstream duplicates(2),mismatches(1) CTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG___TCCTGGATCAGTGACATTCGAGCAGGAACCGCCCCTTCA...AACCACATCAAATCAAGCTGCAGCTTGATCGCCTTCAACTCCGACCGTCCTG|TTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATG___GTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGG NHIKSSCSLIAFNSDRP|vcwniirwlreddgqsasvragvhqvpcshkw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16325 GRHL2::NCALD ENSG00000083307.12::ENSG00000104490.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1581 TRUE 2848 TRUE 1086 GRHL2 ENSG00000083307.12 protein_coding + + chr8:101492439-101669726:+ chr8:101577519:+ chr8:102504667-102681954:+ chr8:102589747:+ NCALD ENSG00000104490.18 protein_coding - - chr8:101686542-102124907:- chr8:101692896:- chr8:102698770-103137135:- chr8:102705124:- chr8:101595746 chr8:101707150 NA NA chr8:102607974 chr8:102719378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none CP2_transcription_factor(51%)|EF-hand_domain_pair(37%) CP2(25%)|EF-hand_1(6%),EF-hand_5(92%),EF-hand_7(12%),EF-hand_8(88%) 15 1 9 558 77 ENST00000646743.1 ENST00000395923.5 downstream downstream mismatches(1) GGCCCCATGACCTACCTCAACAAAGGACAGTTCTATGCCATAACACTCAGCGAGACCGGAGACAACAAATGCTTCCGACACCCCATCAGCAAAGTCAGG___AGTGTGGTGATGGTGGTCTTCAGTGAAGACAAAAACAGAGATGAACAGCTCAAATACTGGAAATACTGGCACTCTCGGCAGCATACGGCGAAGCAGAGGGTCCTTGACATTG|GCAATCTATAAGATGGTTTCCTCTGTAATGAAAATGCCTGAAGATGAGTCAACCCCAGAGAAAAGAACAGAAAAGATCTTCCGCCAGATGGACACCAATAGAGACG___GAAAACTCTCCCTGGAAGAGTTCATCCGAGGAGCCAAAAGCGACCCG GPMTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDI|gnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Prostate adenocarcinoma UTERUS,PROSTATE no_match 102611379|102611379,102631925|102644593 FALSE|FALSE,FALSE|FALSE 102731876|102733579,102928086|102701634 FALSE|FALSE,FALSE|FALSE YES,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16326 GRHL2::NCALD ENSG00000083307.12::ENSG00000104490.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2848 TRUE 1086 GRHL2 ENSG00000083307.12 protein_coding + + chr8:101492439-101669726:+ chr8:101492789:+ chr8:102504667-102681954:+ chr8:102505017:+ NCALD ENSG00000104490.18 protein_coding - - chr8:101686542-102124907:- chr8:101692896:- chr8:102698770-103137135:- chr8:102705124:- chr8:101595746 chr8:101707150 NA NA chr8:102607974 chr8:102719378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |EF-hand_domain_pair(37%) |EF-hand_1(6%),EF-hand_5(92%),EF-hand_7(12%),EF-hand_8(88%) 0 1 0 223 77 ENST00000646743.1 ENST00000395923.5 downstream downstream none CAAGTTCATTGGATCAAACATGTCACAAGAGTCGGACAA|GCAATCTATAAGATGGTTTCCTCTGTAATGAAAATGCCTGAAGATGAGTCAACCCCAGAGAAAAGAACAGAAAAGATCTTCCGCCAGATGGAC MSQESDk|qsirwfpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Prostate adenocarcinoma UTERUS,PROSTATE no_match 102611379|102611379,102631925|102644593 FALSE|FALSE,FALSE|FALSE 102731876|102733579,102928086|102701634 FALSE|FALSE,FALSE|FALSE YES,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16327 LMAN1::CCBE1 ENSG00000074695.6::ENSG00000183287.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LMAN1 ENSG00000074695.6 protein_coding - - chr18:59327823-59359265:- chr18:59347513:- chr18:56995055-57026497:- chr18:57014745:- CCBE1 ENSG00000183287.15 protein_coding - - chr18:59430939-59697662:- chr18:59473150:- chr18:57098171-57364894:- chr18:57140382:- chr18:59346737,chr18:59346754 chr18:59473345,chr18:59473359 NA NA chr18:57013969,chr18:57013986 chr18:57140577,chr18:57140591 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Legume-like_lectin_family(100%)|Calcium-binding_EGF_domain(100%),Collagen_triple_helix_repeat_(20_copies)(100%) Bact_lectin(100%),Lectin_leg-like(100%)|Collagen(100%),EGF(100%),EGF_CA(100%),hEGF(100%) 5 9 6 567 16 ENST00000251047.6 ENST00000649564.1 upstream downstream duplicates(2) AACACACTGACA___GTAATGATCAATAATGGCTTTACACCAGATAAAAATGATTATGAATTTTGTGCCAAAGTGGAAAATATGATTATCCCTGCACAAGGGCATTTTGGAATATCTGCTGCAACTGGAGGTCTTGCAG___ATGACCATGATGTCCTTTCTTTTCTGACTTTCCAGTTGACTGAACCTGGAAAAGAGCCG|GAAGCCAATGGAGAATATTCTCCACTAAAATGAGGGAGTAAACTGGAAGAGAGAAAGACATGGATATATGGTTTGGCTGTGTCCCCACCCAAATCTCACATCGAACTGTAATAATCCCCACGTGTCAAGGGCAGGGCCAGGTGGAGATAATTGAATCATGGGGGCAGTTTCCCCATACTGTTCTCATGGTG___ATTACGACGTTTGTGCCGAGGCTCCCTGTGAACAGCAGTGCACGGACAACTTTGGCCGAGTGCTGT NTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEP|eangeysplk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16328 ZNF236::ZNF516 ENSG00000130856.18::ENSG00000101493.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF236 ENSG00000130856.18 protein_coding + + chr18:76822557-76972901:+ chr18:76925554:+ chr18:74534513-74684857:+ chr18:74637510:+ ZNF516 ENSG00000101493.11 protein_coding - - chr18:76357682-76495242:- chr18:76380303:- chr18:74069637-74207198:- chr18:74092259:- chr18:76927003 chr18:76398611 NA NA chr18:74638959 chr18:74110567 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none C2H2-type_zinc_finger(100%),Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(76%)|Zinc_finger__C2H2_type(25%) zf-C2H2(63%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-C2HC_2(100%),zf-met(100%)|zf-C2H2(15%) 5 5 9 46 15 ENST00000320610.14 ENST00000443185.7 downstream downstream duplicates(2),mismatches(1) AAAGAAGGCCAGAAAGCCTATGACTCGAAGCTCATCGGAAGGACTGCAGCCTGTAAACCTCCTCAACTCCTCCTCTACTGACCCAAACGTGTTTATCATGAACAACTCTGTTCTAACAGGACAGTTTGATCAGAATCTGCTGCAACCAGGACTGGTGGGCCAAGCTATTCTCCCTGCCTCTGTGTCAG|GGGGACAGCCGCGCCGCTGCTGCTTTTCCGAAGAGGTGACTTCGACCGAGCTCTCCAGTGGAGACCAGAGTCACAAGATGGGAGATAACGCCTCGGAAAGAGACACCGGCGAGTCCAAGGCAGGGATCGCAGCTTCTGTGTCCATACTTGAAAACAGTAGCAGAGAGACTTCTAGAAGGCAAGAGCAGCACAGATTTTCTATGGACTTAAAGATGCCA KKARKPMTRSSSEGLQPVNLLNSSSTDPNVFIMNNSVLTGQFDQNLLQPGLVGQAILPASVS|gGQPRRCCFSEEVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRETSRRQEQHRFSMDLKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16330 CAMK2G::VCL ENSG00000148660.22::ENSG00000035403.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMK2G ENSG00000148660.22 protein_coding - - chr10:73812501-73874591:- chr10:73837468:- chr10:75572259-75634349:- chr10:75597226:- VCL ENSG00000035403.18 protein_coding + - chr10:73995193-74121363:+ chr10:74021400:- chr10:75754951-75881121:+ chr10:75781158:- chr10:73827364 chr10:74031497 NA NA chr10:75587122 chr10:75791255 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(100%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 6 5 7 1095 18 ENST00000322680.7 unknown upstream downstream mismatches(2) AGCAAAGCGCATCACGGCTGACCAGGCTCTCAAGCACCCGTGGGTCTGT___CAACGATCCACGGTGGCATCCATGATGCATCGTCAGGAGACTGTGGAGTGTTTGCGCAAGTTCAATGCCCGGAGAAAACTGAAG___GGTGCCATCCTCACGACCATGCTTGTCTCCAGGAACTTCTCAG___CTGCCAAAAGCCTATTGAACAAGAAGTCGGATGGCGGTGTCAAG|GGAAAAAAAAAAACTGCAGTGCTGAAAATGCAACCAATTCAACATTGAAGTCTGTAACTACTCTCATTCTACGGACTCAAATTTGGAAGCTGGGTAGGGGGGTCAGAGAAAGGAGGGGTGGAAACAGACACGAACACAATTAGTTCTAATTCATGATAACAACCATAGTCAAATATTTTAGTAACACAGCAAAGGGAGAGAGCTTCCCTTTGCTGAGCAGCCTGGGAAGAGCTTCATGAAGAGAGT AKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFSAAKSLLNKKSDGGVK|gkkktavlkmqpiqh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma CAMK CAMK2 Q13555 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16331 USP7::PMM2 ENSG00000187555.17::ENSG00000140650.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930293:- chr16:8985954-9069185:- chr16:9024150:- PMM2 ENSG00000140650.13 protein_coding + - chr16:8788823-8862534:+ chr16:8815722:- chr16:8882680-8956391:+ chr16:8909579:- chr16:8926804,chr16:8926806 chr16:8840916,chr16:8840916 NA NA chr16:9020661,chr16:9020663 chr16:8934773,chr16:8934773 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 4 8 5 165 59 ENST00000344836.9 unknown upstream downstream duplicates(2),mismatches(2) GCGGGCGAGCAGCAGTTGAGCGAGCCCGAGGACATGGAGATGGAAG___CGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGGAGGAGGACATGGAGGATG|GAGTTTTACAGTTTCAGGTCCTGTGTTTAAGTCTTTAATCCATGGGTAGATGGCCAAAAGGACGAAGTCAGGATCTCAaAGAGGTATCTGTACCCCCGTGTTCACTGAAGCATTATTCATAATGGCCAAGATACGGAAACAACTCATGTGTCTACTGACAGAAGAATGGATCAAGAAAATGGAGTATATTCTGACCGGGCACGCTGGCTCACGCCTGTAATCCCATCAATTTAGaAGGCCAAGGCAGGTGAATCTCTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAAcGTGGCAAAACC AGEQQLSEPEDMEMEAGDTDDPPRITQNPVINGNVALSDGHNTAEEDMED|gvlqfqvlclsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16335 ZSWIM8::PPP3CB ENSG00000214655.11::ENSG00000107758.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZSWIM8 ENSG00000214655.11 protein_coding + + chr10:73785606-73801797:+ chr10:73795663:+ chr10:75545364-75561555:+ chr10:75555421:+ PPP3CB ENSG00000107758.16 protein_coding - + chr10:73436433-73496024:- chr10:73469852:+ chr10:75196191-75255782:- chr10:75229610:+ chr10:73796298,chr10:73795920,chr10:73795911,chr10:73795836 chr10:73459297,chr10:73459305,chr10:73459293,chr10:73458941 NA NA chr10:75556056,chr10:75555678,chr10:75555669,chr10:75555594 chr10:75219055,chr10:75219063,chr10:75219051,chr10:75218699 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none SWIM(100%)| 5 3 7 1771 42 ENST00000604729.6 unknown downstream upstream duplicates(2),low_entropy(1),mismatches(3) CCCGGCCCCCAAGTCGCAACTGGAACAGCGAGACACCTGGGGATGAGGAGCTTGGATTTGAAGCAGCAGTTGCTGCCTTGG___GCATGAAGACAACAGTGAGCGAGGCAGAACATCCCCTCTTATGTGAAGGCACACGTCGGGAGAAGGGTGACCTGGCATTAGCACTAATGATCACTTACAAGGACGACCAGGCCAAGCTTAAGAAG|TCTGATCCTGAAGCTATGGCATAGTCAACTGAATTCCAGACATGTCAAGACAGAAGAGAAGCTGGCCTCTTAATATCATCTTCCAAAGATGTAAACTACATAAACATACCCAATCTCATCTTCAATGTCCTTGGCACACACTTAACTAGATTAAGACCCTTTGGCACTTTCTGTCAATAAACTGTATTCAAAATAAAATGAAATCCAAT RPPSRNWNSETPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKK|sdpeama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16338 ENSG00000290995::LRP5 ENSG00000290995.1::ENSG00000162337.12 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000290995 ENSG00000290995.1 lncRNA - - chr11:67934563-67955802:- chr11:67955482:- chr11:67702034-67723273:- chr11:67722953:- LRP5 ENSG00000162337.12 protein_coding + - chr11:68312591-68449275:+ chr11:68332935:- chr11:68080059-68216743:+ chr11:68100403:- chr11:67952470,chr11:67952479 chr11:68336711,chr11:68336717 NA NA chr11:67719941,chr11:67719950 chr11:68104179,chr11:68104185 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 2 9 3 11 137 ENST00000527543.2 unknown upstream downstream duplicates(2),mismatches(1) CTTCCCCAGGTGCAGGCAGAGCCCCCGGAGCCATGGCCAGCCCTTCCGGCAGCTCCAAAGCCACTGGCAAGCCCCGAGGCAGGGATGGCCGGCCCAGGAGA...GGACGACGTCACTCCCGAAGAGAAGAGGCTGCGGCTGTTGCTGGAGGAGGGAAGCGCACAGCCCGATGACGGGGAGGACGCACCGCGGCCAGGCAGGAAGGAGACCGGCACCCAGACAGGTGGCGACGGCAGAGGA|AGAAAGCTCTGCAAACTCAAGCTGGAGTGGGATACTTGCTGACATCTTCAAGCACCCCAGGAATAGCTCTACTCCCCCATTTCCACCTTGGCTGAACCATCTATATCCCACCAATTCCCCCAACATCCCTCCATCCGTCCATCCATCCACCCAAGGACCTGCTAAGCCAGGAGGTCTCTCCCATCTACCC...CTCTCTCTACATGAATCCCACCGCACCAGAGTAGACCAAGTCTCCCGTAGACTCCACCCTGACCACCTCCATGCCTCCAGCCATTCCCACCCCTAAAAACCCTCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16339 EZH2::PSD3 ENSG00000106462.12::ENSG00000156011.19 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1584 TRUE 2849 TRUE 1087 EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148826469:- chr7:148504349-148581413:- chr7:148523561:- PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:18804898:- chr8:18384813-18942240:- chr8:18662408:- chr7:148825532,chr7:148825539 chr8:18853996,chr8:18854000 NA NA chr7:148522624,chr7:148522631 chr8:18711506,chr8:18711510 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Polycomb_repressive_complex_2_tri-helical_domain(100%),WD_repeat_binding_protein_EZH2(100%)|Pleckstrin_homology_domain(100%),Sec7_domain(100%) EZH2_WD-Binding(100%),PRC2_HTH_1(100%)|PH(100%),PH_9(100%),Sec7(100%) 5 5 3 437 68 ENST00000683292.1 ENST00000327040.13 upstream downstream mismatches(1) GAAAA___ATATAAAGAACTCACCGAACAGCAGCTCCCAGGCGCACTTCCTCCTGAATGTACCCCCAACATAGATGGACCAAATGCTAAATCTGTTCAGAGAGAGCAAAGCTTACACTCCTTTCATACGCTTTTCTGTAGGCGATGTTTTAAATATGACTGCTTCCTACATC|CAATGCTGGGGTGAAAACAACACGGCTAGAAGCTCATTCTGAAATGGGGAGCACTGAAATTTTGGAAAAGGAGACCCCAGAAAATCTCAGTAATGGTACCAGCAGCAATGTGGAAGCAGCCAAAAGGTTGGCCAAACGCCTTTATCAGCTGGACAGATTCAAAAGATCAGATGTTGCAAAACACCTTGGCAAGAA___CAACGAATTTAGCAAACTAGTTGCAGAAGAATATCTGAAGTTTTTTGATTTTACAGGAATGACGCTGGATCAGTCACT EKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLH|pmlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 16340 EZH2::PSD3 ENSG00000106462.12::ENSG00000156011.19 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2849 TRUE 1087 EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148827164:- chr7:148504349-148581413:- chr7:148524256:- PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:18804898:- chr8:18384813-18942240:- chr8:18662408:- chr7:148825532,chr7:148825539 chr8:18853996,chr8:18854000 NA NA chr7:148522624,chr7:148522631 chr8:18711506,chr8:18711510 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Polycomb_repressive_complex_2_tri-helical_domain(93%),WD_repeat_binding_protein_EZH2(100%)|Pleckstrin_homology_domain(100%),Sec7_domain(100%) EZH2_WD-Binding(100%),PRC2_HTH_1(82%)|PH(100%),PH_9(100%),Sec7(100%) 2 0 3 333 68 ENST00000683292.1 ENST00000327040.13 upstream downstream none CGATGATGATGATGGAGACGATCCTGAAGAAAGAGAAGAAAAGCAGAAAGATCTGGAGGATCACCGAGATG___ATAAAGAAAGCCGCCCACCTCGGAAATTTCCTTCTGATAAAATTTTTGAAGCCATTTCCTCAATGTTTCCAGATAAGGGCACAGCAGAAGAACTAAAGGAAAA|CAATGCTGGGGTGAAAACAACACGGCTAGAAGCTCATTCTGAAATGGGGAGCACTGAAATTTTGGAAAAGGAGACCCCAGAAAATCTCAGTAATGGTACCAGCAGCAATGTGGAAGCAGCCAAAAGGTTGGCCAAACGCCTTTATCAGCTGGACAGATTCAAAAGATCAGATGTTGCAAAACACCTTGGCAAGAA___CAACGAATTTAGCAAACTAGTTGCAGAAGAATATCTGAAGTTTTTTGATTTTACAGGAATGACGCTGGATCAGTC DDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEELKEn|NAGVKTTRLEAHSEMGSTEILEKETPENLSNGTSSNVEAAKRLAKRLYQLDRFKRSDVAKHLGKNNEFSKLVAEEYLKFFDFTGMTLDQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 16342 RGS3::SLC31A2 ENSG00000138835.24::ENSG00000136867.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2850 FALSE NA RGS3 ENSG00000138835.24 protein_coding + + chr9:113444731-113597743:+ chr9:113565730:+ chr9:116207011-116360023:+ chr9:116328010:+ SLC31A2 ENSG00000136867.11 protein_coding + + chr9:113150976-113164140:+ chr9:113162749:+ chr9:115913256-115926420:+ chr9:115925029:+ chr9:113582347,chr9:113582345 chr9:113162251,chr9:113162246 NA NA chr9:116344627,chr9:116344625 chr9:115924531,chr9:115924526 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none C2_domain(100%),PDZ_domain(100%)|Ctr_copper_transporter_family(35%) C2(100%),PDZ(100%)|Ctr(2%) 1 0 0 65 93 ENST00000463806.5 ENST00000259392.8 downstream upstream none CGGCCGCCAGGAGCTGCCACAGCCACGGCCGCCCGCCTGCGGGAGGAGCCGGGTGGAAACCTGGGCGGGCGAGCTGGCAGGAGCGGCAGCCAGGAGTCGCCTGGGTCCCTGCTGGAGTATGCTGG|GTGGTATTTGTGTCACTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16343 MRPS23::ENSG00000286266 ENSG00000181610.13::ENSG00000286266.1 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57849240:- chr17:55912142-55927417:- chr17:55926601:- ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127605870:+ chr8:128590718-128649112:+ chr8:128618115:+ chr17:57848136,chr17:57848140 chr8:127605645,chr8:127605631 NA NA chr17:55925497,chr17:55925501 chr8:128617890,chr8:128617876 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Mitochondrial_ribosomal_protein_S23(55%)| MRP-S23(8%)| 2 6 5 942 22 ENST00000313608.13 unknown upstream upstream none ATCATGGCAGGCAGCCGGCTGGAAACCGTAGGGAGCATCTTCTCTCG___GACTCGGGACCTGGTTCGGGCCGGGGTGCTGAAGGAGAAGCCCCTGTGGTTTGACGTATATGACGCCTTTCCCCCGCTGAGGGAGCCCGTCTTCCAAAGGCCTCGAGTGCGATATGGCAAAGCCAAAGCTCCCATCCAAGACATCTGGTACCACGAGGATCGGATTAGAGC|CCTTCCAAACAGGATGCTGTCCATTCACCTTGGAGCTGCCATCTGTAAACCACGCAGCTCCTTGTTGGTCAGTCAGGAGCTGTTCATACTGTACTGTCCAAGTGTTGATAGAATCTGGCAGCACCTCCCACAGTTCCAGAG MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPIQDIWYHEDRIRa|lpnrmlsihlgaaickprssllvsqelfilycpsvdriwqhlpqfq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16344 INTS4::GAB2 ENSG00000149262.19::ENSG00000033327.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1586 TRUE 2851 TRUE 1088 INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77991108:- chr11:77585464-77705761:- chr11:77702154:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- chr11:77985143,chr11:77985151 chr11:78326340,chr11:78326345 NA NA chr11:77696189,chr11:77696197 chr11:78037386,chr11:78037391 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(82%) |PH(0%) 3 8 0 123 67 ENST00000695303.1 ENST00000361507.5 upstream downstream low_entropy(1) CATAGATCTGTGTAAAGCTACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGAC IDLCKATSPADALQYLLQFARKPVEAESVEGVVRILLEHYYK|AWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 77690042|77692505 FALSE|FALSE 77991947|77991947 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16345 INTS4::GAB2 ENSG00000149262.19::ENSG00000033327.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2851 TRUE 1088 INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77991108:- chr11:77585464-77705761:- chr11:77702154:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78318219:- chr11:77926339-78129394:- chr11:78029265:- chr11:77985143,chr11:77985151 chr11:78326340,chr11:78326345 NA NA chr11:77696189,chr11:77696197 chr11:78037386,chr11:78037391 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none |PH_domain(82%) |PH(27%) 1 0 0 123 0 ENST00000695303.1 ENST00000526030.1 upstream downstream none TACCTCCCCAGCAGATGCTTTGCAATACTTGCTCCAGTTTGCCAGGAAGCCTGTCGAGGCGGAAAGCGTAGAGGGAGTAGTCAGGATTCTCTTGGAACATTATTACAAG|ATTCACTCCTGATCCCTCATCTCCCTCCTCAAAAAGAAGTCTCCCTCAATTATCAACTCTCTGATGGATTTTCCC TSPADALQYLLQFARKPVEAESVEGVVRILLEHYYK|ihs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 77690042|77692505 FALSE|FALSE 77991947|77991947 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16346 IL6R::ATP8B2 ENSG00000160712.13::ENSG00000143515.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1587 FALSE NA FALSE NA IL6R ENSG00000160712.13 protein_coding + + chr1:154405193-154469450:+ chr1:154448171:+ chr1:154377669-154441926:+ chr1:154420647:+ ATP8B2 ENSG00000143515.20 protein_coding + + chr1:154325525-154351304:+ chr1:154330396:+ chr1:154298001-154323780:+ chr1:154302872:+ chr1:154448876,chr1:154448877 chr1:154328364,chr1:154328362 NA NA chr1:154421352,chr1:154421353 chr1:154300840,chr1:154300838 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Immunoglobulin_domain(100%),Interleukin-6_receptor_alpha_chain__binding(100%)|Cation_transport_ATPase_(P-type)(100%),E1-E2_ATPase(100%),Phospholipid-translocating_ATPase_N-terminal(100%),Phospholipid-translocating_P-type_ATPase_C-terminal(100%) IL6Ra-bind(100%),ig(100%)|Cation_ATPase(100%),E1-E2_ATPase(100%),PhoLip_ATPase_C(100%),PhoLip_ATPase_N(100%) 2 4 5 101 21 ENST00000368485.8 ENST00000368489.6 downstream upstream inconsistently_clipped(1) CATCACTGTGTCATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCAGCTTCGTGCCCAGGAGGAGTTCGGGCAAGGCGAGTGGAGCGAGTGGAGCCCGGAGGCCATGGGCACGCCTTGGACAG___AATCCAGGAGTCCTCCAGCTGAGAACGAGGTGTCCACCCCCATGCAG|AAGAAGAAAGGAGGGCGCGGGCTAATGACCGAGAATACAATGAGAAATTCCAGTATGCG___AGTAACTGCATCAAGACCTCCAAGTACAATATTCTCACCTTCCTGCCTGTCAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACACTTACTTCCTGTT HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQ|kkkggrglmtentmrnssmrvtasrppstifspsclstslsssrklptltsc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16347 C11orf80::CCS ENSG00000173715.19::ENSG00000173992.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2852 TRUE 1089 C11orf80 ENSG00000173715.19 protein_coding + + chr11:66744451-66843516:+ chr11:66788269:+ chr11:66511922-66610987:+ chr11:66555740:+ CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593642:+ chr11:66360624-66373490:+ chr11:66361113:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Copper/zinc_superoxide_dismutase_(SODC)(100%),Heavy-metal-associated_domain(100%) |HMA(100%),Sod_Cu(100%) 3 1 7 136 709 ENST00000540737.7 ENST00000533244.6 downstream upstream none CGGGCGGGTACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCATGGAGGGGACGGCCGTGGCCGTGTTCGAG___TTGCTTCTGCAGGAAGCCTTTTTGGTGGCATGGTCCTCAAGAAGTTCCTAAAAG___AAATACAGTCCATACTGCCCGGAATCTCTGCAAAGCTGACTTGGACTTCAGAGGAAGGCAGCTATTCTCAGGATATGACAGGGGTAACACCCTTCCAGATGATTTTTGAG|TTGGAGTTCGCGGTGCAGATGACCTGTCAGAGCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAG___GTGTCCAGGATGTGGAGGTGCACTTGGAGGACCAGATGGTCTTG MVLKKFLKEIQSILPGISAKLTWTSEEGSYSQDMTGVTPFQMIFE|LEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16348 C11orf80::CCS ENSG00000173715.19::ENSG00000173992.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2852 TRUE 1089 C11orf80 ENSG00000173715.19 protein_coding + + chr11:66744451-66843516:+ chr11:66788270:+ chr11:66511922-66610987:+ chr11:66555741:+ CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66599117:+ chr11:66360624-66373490:+ chr11:66366588:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Copper/zinc_superoxide_dismutase_(SODC)(100%),Heavy-metal-associated_domain(59%) |HMA(1%),Sod_Cu(100%) 4 0 4 136 698 ENST00000540737.7 ENST00000533244.6 downstream upstream none GTTGCCGCTGTTCCCTGCGCGGCATGGAGGGGACGGCCGTGGCCGTGTTCGAG___TTGCTTCTGCAGGAAGCCTTTTTGGTGGCATGGTCCTCAAGAAGTTCCTAAAAG___AAATACAGTCCATACTGCCCGGAATCTCTGCAAAGCTGACTTGGACTTCAGAGGAAGGCAGCTATTCTCAGGATATGACAGGGGTAACACCCTTCCAGATGATTTTTGAGG|TGTCCAGGATGTGGAGGTGCACTTGGAGGACCAGATGGTCTTGGTACACACCACTCTACCCAGCCAGGAGGTGCAGGCTCTCCTGGAAGGCACGGGGCGGCAGGCGGTACTCAAGGGCATGGGCAGCGGCCAGTTGC___AGAATCTGG MVLKKFLKEIQSILPGISAKLTWTSEEGSYSQDMTGVTPFQMIFE|vsrmwrctwrtrwswytplyparrcrlswkarggrrysrawaaascri NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16349 C11orf80::CCS ENSG00000173715.19::ENSG00000173992.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2852 TRUE 1089 C11orf80 ENSG00000173715.19 protein_coding + + chr11:66744451-66843516:+ chr11:66759096:+ chr11:66511922-66610987:+ chr11:66526567:+ CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66599116:+ chr11:66360624-66373490:+ chr11:66366587:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication medium none |Copper/zinc_superoxide_dismutase_(SODC)(100%),Heavy-metal-associated_domain(60%) |HMA(1%),Sod_Cu(100%) 3 1 1 206 698 ENST00000524551.5 ENST00000533244.6 downstream upstream none GGGCCCTGCAGCGTCGAGTGCGCAGGCGCGGCGGGCAG___TTGCTTCTGCAGGAAGCCTTTTTGGTGGCATGGTCCTCAAGAAGTTCCTAAAAG|GTGTCCAGGATGTGGAGGTGCACTTGGAGGACCAGATGGTCTTGGTACACACCACTCTACCCAGCCAGGAGGTGCAGGCTCTCCTGGAAGGCACGGGGCGGCAGGCGGTACTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16350 NAA40::SPINDOC ENSG00000110583.13::ENSG00000168005.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2853 TRUE 1090 NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63955161:+ chr11:63706431-63724791:+ chr11:63722633:+ SPINDOC ENSG00000168005.9 protein_coding + + chr11:63813456-63827716:+ chr11:63817805:+ chr11:63580928-63595188:+ chr11:63585277:+ chr11:63956045,chr11:63956046 chr11:63814718,chr11:63814716 NA NA chr11:63723517,chr11:63723518 chr11:63582190,chr11:63582188 NA NA sense sense unknown 3'UTR CDS/splice-site duplication high none Acetyltransferase_(GNAT)_family(100%)|Spin-doc_zinc-finger(100%) Acetyltransf_1(100%)|zf-C2H2_12(100%) 2 1 8 228 533 ENST00000338447.10 ENST00000294244.9 downstream upstream none TTCAGAGAGACTCACGCTTGCGCAGTTGGAATTGCTGTTAACGGAGACTGGGAAGATCTTTTGTGCCAAGATGCAGGGAAATGAAGAAAGCTCTTTCCAGCTGTTTTTATGGATTCATGGAGTGGGCTCATGTTGGGACCAGCTGACTCTGGGAGGAAGACTGCCTCTCCATCGCTGTCAGAGAGCCTGAAAGGACCAACAATGAG|TGACCCAACAGGAGAAGACCCCACCGCCTAGACCCAGCCCGCTAGAGGCAGGCAGTGATGGCTGTGAGGAGCCGAAGCAGCAGGTGTCTTGGGAGCAGGAGTTCCTGGTGGGCAGCAGCCCAGGAGGCAGCGGGCGGG...___GAGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16351 NAA40::SPINDOC ENSG00000110583.13::ENSG00000168005.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2853 TRUE 1090 NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63954049:+ chr11:63706431-63724791:+ chr11:63721521:+ SPINDOC ENSG00000168005.9 protein_coding + + chr11:63813456-63827716:+ chr11:63817805:+ chr11:63580928-63595188:+ chr11:63585277:+ chr11:63956045,chr11:63956046 chr11:63814718,chr11:63814716 NA NA chr11:63723517,chr11:63723518 chr11:63582190,chr11:63582188 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Acetyltransferase_(GNAT)_family(100%)|Spin-doc_zinc-finger(100%) Acetyltransf_1(100%)|zf-C2H2_12(100%) 3 2 5 204 533 ENST00000377793.9 ENST00000294244.9 downstream upstream none CGGAAAGGCCTGGGGAAGTTCCTCATACAGATCCTGCAGCTCATGGCCAACAG___CACACAGATGAAGAAGGTTATGTTAACAGTATTTAAACACAATCATGGTGCCTACCAGTTCTTCAGAGAAGCGTTGCA|TGACCCAACAGGAGAAGACCCCACCGCCTAGACCCAGCCCGCTAGAGGCAGGCAGTGATGGCTGTGAGGAGCCGAAGCAGCAGGTGTCTTGGGAGCAGGAGTTCCTGGTGGGCAGCAGCCCAGGAGGCAGCGGGCGGG...___GAGTGGAG RKGLGKFLIQILQLMANSTQMKKVMLTVFKHNHGAYQFFREALh|dptgedpta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16358 RNF24::SMOX ENSG00000101236.17::ENSG00000088826.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF24 ENSG00000101236.17 protein_coding - - chr20:3927309-4015558:- chr20:3945177:- chr20:3907956-3996205:- chr20:3925824:- SMOX ENSG00000088826.18 protein_coding + - chr20:4120980-4187747:+ chr20:4160513:- chr20:4101627-4168394:+ chr20:4141160:- chr20:3943631,chr20:3943633 chr20:4160880,chr20:4160880 NA NA chr20:3924278,chr20:3924280 chr20:4141527,chr20:4141527 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 5 2 73 18 ENST00000358395.11 unknown upstream downstream mismappers(1) ATTTGTCTTCATCCTTAGTTTACTCTTCTGTTGCTACTTGATTAG___GCTAAGACATCAAGCACACAAAGAATTTTATGCCTACAAACAG___GTTATATTAAAAGAGAAAGTAAAAGAATTGAATTTACATGAG|ATGAGGAAACAGGCCCCAAGAGGTTCAGAGGCATGACAGACGCCACCTGGATGGAGTGAGGGGCAGGGCAGGGCAACACTGCTCAATCCCTGCTCCGACCTCAGGCCCCCCTACTCAGCCTCCCCAGGGGTGCGGCAGGCCCGAGGACTGCCCTGGCTCAACGATTCTCCCATCTTACTCCTCCCCACATACTGATATGCACACACTGTGCCAGGCACTTGGGGCTGGCAGGAGTCATCTCAAGGCCTG FVFILSLLFCCYLIRLRHQAHKEFYAYKQVILKEKVKELNLHE|mrkqaprgsea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16359 SNX30::KIAA1958 ENSG00000148158.17::ENSG00000165185.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNX30 ENSG00000148158.17 protein_coding + + chr9:112750760-112881671:+ chr9:112817815:+ chr9:115513040-115643951:+ chr9:115580095:+ KIAA1958 ENSG00000165185.15 protein_coding + + chr9:112486827-112669397:+ chr9:112617871:+ chr9:115249107-115431677:+ chr9:115380151:+ chr9:112830605,chr9:112830605,chr9:112830604 chr9:112616827,chr9:112616829,chr9:112616823 NA NA chr9:115592885,chr9:115592885,chr9:115592884 chr9:115379107,chr9:115379109,chr9:115379103 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PX_domain(38%)|Domain_of_unknown_function_(DUF3504)(100%) PX(0%)|DUF3504(100%) 5 3 0 87 24 ENST00000374232.8 ENST00000374244.3 downstream upstream duplicates(2) TCTCATTTTGCCCAACGGTGGTACTCCAGCAGGTACTTCAAGTCCAGCTTCTTCATCTTCCCTTCTCAACAGACTTCAGCTTGATGATGATATTGATGGTGAGACTAGAGATCTCTTCGTTATAGTcGATGATCCCAAGAAGCATGTGTGTACAATGGAGACTTACATCACCTATAGGATCACCACCAAA___AGTACTCGGGTGGAGTTTGACCTcCCAGAATATTCTGTTCGTCGAAGATACCAGGATTTTGACTGGTTGAGGAGCAAACTGGAAGAATCCCAGCCCACTCATCTCATTCCC|ACCAGGATGAAAGAGCAGCTGAGCTCAGCAGGGAGCAGAACGAGAAAACCATCCGGAGCACGCAGACCGCGCTCCGCAATTTCCGTGAGTTCCTCATCTCCAAG...GATGCCTACCTTGCCTCTTTCTTTGTTGATGCCAGGCAGAAGGATGGGTCCGAATACGAACCCAACAGCTTGGCCAATTACCAGTGTGGGCTCGAAAGGT...GCTTCCATGGATCTACCTTAAAATGGGGTGATATCCGGCTCCGGGTAACAGAGACGGGTCTCGAGTACTTGGAGTGGATGGGTCAGGACACTGGAGACTTG LILPNGGTPAGTSSPASSSSLLNRLQLDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRSKLEESQPTHLIP|trmkeqlssagsrtrkpsgarrprsaisvssssp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Lung squamous cell carcinoma,Colon adenocarcinoma,Bladder Urothelial Carcinoma,Prostate adenocarcinoma,Esophageal carcinoma,Pheochromocytoma and Paraganglioma LUNG,COLON,BLADDER,PROSTATE,OESOPHAGUS,ADRENAL_GLAND no_match 115580095,115580095,115580095|115580095,115580095,115513437,115580095 TRUE,TRUE,TRUE|TRUE,TRUE,FALSE,TRUE 115380151,115380151,115407930|115380151,115380151,115407930,115380151 TRUE,TRUE,FALSE|TRUE,TRUE,FALSE,TRUE PARTIALLY,YES,PARTIALLY,YES,YES,YES Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16361 ODF2::DNM1 ENSG00000136811.17::ENSG00000106976.22 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2856 FALSE NA ODF2 ENSG00000136811.17 protein_coding + + chr9:128455186-128501292:+ chr9:128469353:+ chr9:131217465-131263571:+ chr9:131231632:+ DNM1 ENSG00000106976.22 protein_coding + + chr9:128191655-128255248:+ chr9:128253101:+ chr9:130953934-131017527:+ chr9:131015380:+ chr9:128469691,chr9:128469688 chr9:128251716,chr9:128251710 NA NA chr9:131231970,chr9:131231967 chr9:131013995,chr9:131013989 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 4 2 2 367 78 ENST00000393527.8 ENST00000627543.2 downstream upstream none CGGCGGAGTGTCCGGGTGAAAACCAAG___AATCCACCTCATTGCCTGGAGATCACGCCACCATCTTCAGAAAAGCTGGTCTCAGTGATGCGGTTAAGTGACCTCTCTACAGAAGATGATGACTCAGGTCACTGTAAAATGAACCGTTATGATAAGAAGATTGATAGTCTAATGAATGCGGTTGGTTGTCTGAAGTCTGAG|AATCACTATCAGTGACCCCTGAGGAGCGTCAGCCATG___GAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAGCTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCACTGGCATCCGGCTGCCTGCCCTCCCTGCCTCCCCCAGGGTCCCTTCAGAGGGTCCTGGGTTTTCTG RRSVRVKTKNPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSE|nhyq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16365 MIR646HG::CDH26 ENSG00000228340.8::ENSG00000124215.17 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR646HG ENSG00000228340.8 lncRNA + + chr20:60087661-60653784:+ chr20:60138644:+ chr20:58662716-59228842:+ chr20:58713700:+ CDH26 ENSG00000124215.17 protein_coding + + chr20:59958423-60034011:+ chr20:60006713:+ chr20:58533478-58609066:+ chr20:58581768:+ chr20:60139865,chr20:60139866 chr20:60003935,chr20:60003933 NA NA chr20:58714921,chr20:58714922 chr20:58578990,chr20:58578988 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 4 1 2 29 3 ENST00000659856.1 ENST00000370991.7 downstream upstream duplicates(1),mismatches(1) TTTTGCGTTTCAGATGCTCCCAGGCTCTCCCGCAGTTTAAAGACTTAACTCAGCGGCTTTCAGGGCCTGTGGTTGAGGGACTCCGAAAGAACTGTTGCTGGTGGACCGGTTCAGGGTCTTGACTTCGCCACACAAAAGAACTTGAGAGCACGTCCAAAGTAAAG|GCTTACCCAGATGCCACAATGCACAGACAACTCCTGGCTCCGGTGGAAGGAAGGATGGCAGAGACATTGAATCAG___AAACTCCATGTTGCCAATGTGCTGGAAGATGACCCCGGCTACCTACCTCACGTCTAC...___TCTAAAGAGAGAAATCGCTTCAGCCTCAGCAGGGGCTGCATCATCCCCCAGGGAAGAGCCACAGCTGGGCGAGGATTGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16366 ZCCHC8::CCDC62 ENSG00000033030.16::ENSG00000130783.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZCCHC8 ENSG00000033030.16 protein_coding - - chr12:122471600-122500932:- chr12:122489386:- chr12:122956147-122985479:- chr12:122973933:- CCDC62 ENSG00000130783.14 protein_coding + - chr12:122774526-122827528:+ chr12:122786477:- chr12:123259073-123312075:+ chr12:123271024:- chr12:122486416 chr12:122786820 NA NA chr12:122970963 chr12:123271367 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 1 2 122 36 ENST00000633063.3 unknown upstream downstream mismappers(2) GAAAAATGATGTGGAAAAGACTTCCTTTAATCTTTTGCCCCAG___CCATCCAGTATTGTGCTAGAGGAGGACCACAAAGTGGAAGAGTCCTGTGCCATTAAAAACAACAAGGAAGCTTTCAGT|ATGGTTTTTCTCTCCATTAAAAAAACCTCTGGCTGAGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCgCGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAAT KNDVEKTSFNLLPQPSSIVLEEDHKVEESCAIKNNKEAFS|mvflsikktsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger, CCHC domain containing 8 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16367 GON4L::SLC9A1 ENSG00000116580.20::ENSG00000090020.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155785334:- chr1:155719450-155829191:- chr1:155755125:- SLC9A1 ENSG00000090020.11 protein_coding - + chr1:27098809-27166981:- chr1:27161896:+ chr1:27425300-27493472:- chr1:27488387:+ chr1:155784316,chr1:155784326 chr1:27158808,chr1:27158797 NA NA chr1:155754107,chr1:155754117 chr1:27485299,chr1:27485288 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 1 3 3 293 12 ENST00000615926.4 unknown upstream upstream mismappers(1),mismatches(1) GCTGGGGGGACTTATGAATGATGATGTGGGGAATGAAG___ATGAAGCAGATGATGATGATGATCCAGAATATAATTTCCTGGAAGACCTCGATGAACCAGACACAGAGGATTTCCGGACTGACCGGGCAGTGAGAATCACCA___AAAAGGAAGTAAATGAGCTGATGGAAGAGCTGTTTGAAACT|AGTCTTGCTGTCACCTAGGCTAGAGTACAATGGTGCAATCATAGCTCACAGCAACCTCAAACTCCTGGGCTCAACCGATCCTCCAGCCTCGCCCTCCCGAGCAGCTTGGACTACAG___AGACCATCAAGCTTCAGATGATCA LGGLMNDDVGNEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNELMEELFET|slavt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16371 NUDCD3::OGDH ENSG00000015676.18::ENSG00000105953.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUDCD3 ENSG00000015676.18 protein_coding - - chr7:44379119-44490658:- chr7:44484968:- chr7:44418718-44530257:- chr7:44524567:- OGDH ENSG00000105953.16 protein_coding + - chr7:44606572-44709066:+ chr7:44675277:- chr7:44646171-44748665:+ chr7:44714876:- chr7:44432817 chr7:44694319 NA NA chr7:44472416 chr7:44733918 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none N-terminal_conserved_domain_of_Nudc.(100%)| Nudc_N(100%)| 2 4 1 155 647 ENST00000355451.8 unknown upstream downstream duplicates(1),low_entropy(1) CAAGACTGTGTCAGCTGCTGCAGCTGAGAAGGAGCCAGTCCCAGTTCCAGTCCAGGAAATAGAGATTGACTCCACCACAGAATTGGATGGGCATCAGGAAG...GAAAGTGCAGCCTCCAGGCCCTGTGAAGGAAATGGCCCATGGTTCACAGGAGGCAGAAGCTCCAGGAGCAGTTGCTGGTGCTGCTGAAGTCCCTAGGGAACCACCAATTCTTCCCAG|GTGCCTCACCTCATCAGCTGCCTCCAGCTTTGAATCGAATTGACAGAAGATCTGTTCCAGCTCCTTCCTGATGACATTTGCAAGCACGTTCAGCCGCCCTCTGGAACGTATGGGCGAGTAGGGTGAGCAGAGCCTGAGGTCATGGTTTCCAGATGGCAGATGAGGGTGTTACAATCCCCCCCTCCCCCTCCCCCCAGGACAC KVQPPGPVKEMAHGSQEAEAPGAVAGAAEVPREPPILPr|cltssaassfesn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16372 LIMCH1::APBB2 ENSG00000064042.18::ENSG00000163697.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LIMCH1 ENSG00000064042.18 protein_coding + + chr4:41359607-41700044:+ chr4:41494606:+ chr4:41361624-41702061:+ chr4:41496623:+ APBB2 ENSG00000163697.18 protein_coding - + chr4:40810027-41216714:- chr4:41212359:+ chr4:40812044-41218731:- chr4:41214376:+ NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none Calponin_homology_(CH)_domain(34%)| CH(56%)| 2 3 1 354 11 ENST00000513024.5 unknown downstream upstream mismappers(5),mismatches(2),multimappers(2) GGATGGGGAAGCCTTTACCATACCTAGGCCTGGGAGGTTGAGTGGGACAAGAGGAGATGAGGAACCTTCTGGAAACCCCCTAACCACCTGCAGGAAGGGACGAGATAAATAAATGCACGTCTCTCTTCAGCTCACTGACCATCTGCCTACCTCCCGTTAATGGAACCGCGACTCACAG___CAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGA|AAACAGGATCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCATAGCTCACTACAGCCTCAAACTCCTAGGCTCAAGCAATCCTCCCACCTCACCATCCAGCTTTTCAATTACCACTTTATAAAAATTTCAGAAAGCCAGTTCACATTGGCTCCTTGAAGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16373 PPP6R2::MOV10L1 ENSG00000100239.16::ENSG00000073146.17 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2858 TRUE 1091 PPP6R2 ENSG00000100239.16 protein_coding + + chr22:50343304-50445090:+ chr22:50435081:+ chr22:50781733-50883519:+ chr22:50873510:+ MOV10L1 ENSG00000073146.17 protein_coding + + chr22:50090006-50161690:+ chr22:50108136:+ chr22:50528435-50600119:+ chr22:50546565:+ chr22:50436284,chr22:50436280 chr22:50103665,chr22:50103658 NA NA chr22:50874713,chr22:50874709 chr22:50542094,chr22:50542087 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SIT4_phosphatase-associated_protein(93%)|AAA_domain(100%) SAPS(94%)|AAA_11(100%),AAA_12(100%),AAA_30(100%) 2 1 3 85 6 ENST00000359139.7 ENST00000419054.5 downstream upstream duplicates(2) CTCACAGCGCTGGAGTC___GCAGGACTGTGTGGAGCAGCTTCTGAAGAACATGTTTGATGGAGACCGGACGGAGAGCTGCCTCGTCAGTGGGACTCAGGTGTT...GGAACATGGGCCACCTCACACGGATCGCCAACGCGGTGGTGCAGAACCTGGAGCGGGGCCCTGTGCAGACGCACATCAGCGAGGTCATCCGAG|GCTTCGAGCCCTGCAAGGGAGACTGGGTGGAGGCTGAGTACCGGATCCGGCCTGGCACGTGGAGCAGCGAAGCCACCTCAGTGAAGCCACTGAGATACAAGCGCGTGGACAAGGTAGCGTGCCGACTAGgGGC NMGHLTRIANAVVQNLERGPVQTHISEVIR|gfepckgdwveaeyrirpgtwsseatsvkplrykrvdkvacrlg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-12114 chr22:50407442-50407524:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16374 PPP6R2::MOV10L1 ENSG00000100239.16::ENSG00000073146.17 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2858 TRUE 1091 PPP6R2 ENSG00000100239.16 protein_coding + + chr22:50343304-50445090:+ chr22:50432329:+ chr22:50781733-50883519:+ chr22:50870758:+ MOV10L1 ENSG00000073146.17 protein_coding + + chr22:50090006-50161690:+ chr22:50108136:+ chr22:50528435-50600119:+ chr22:50546565:+ chr22:50436284,chr22:50436280 chr22:50103665,chr22:50103658 NA NA chr22:50874713,chr22:50874709 chr22:50542094,chr22:50542087 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SIT4_phosphatase-associated_protein(84%)|AAA_domain(100%) SAPS(83%)|AAA_11(100%),AAA_12(100%),AAA_30(100%) 1 0 3 90 6 ENST00000359139.7 ENST00000419054.5 downstream upstream none CAGGGTGGAGCCTCCGCATGAGAACGGGAACCGGAGCCTGGAGACTCCCCAGCCGGCCGCCAGCCTCCCTGACAACACAATGGTGACCCAC___CTGTTCCAGAAGTGCTGCCTGGTGCAGAGGATCCTGGAGGCCTGGGAAGCCAACGACCACACGCA|GCTTCGAGCCCTGCAAGGGAGACTGGGTGGAGGCTGAGTACCGGATCCGGCCTGGCACGTGGAGCAGCGAAGCCACCTCAGTGAAGCCACTGAGATACAAGCGCGTGGACAAGGTAGCGTGCCGACTAGgGGC RVEPPHENGNRSLETPQPAASLPDNTMVTHLFQKCCLVQRILEAWEANDHTq|lralqgrlggg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-12114 chr22:50407442-50407524:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16375 GOLM2::ENSG00000289277 ENSG00000166734.20::ENSG00000289277.1 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44289356:+ chr15:44580917-44707956:+ chr15:44581554:+ ENSG00000289277 ENSG00000289277.1 lncRNA - + chr15:44275146-44288408:- chr15:44286265:+ chr15:44567344-44580606:- chr15:44578463:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 2 0 144 17 ENST00000299957.11 unknown downstream upstream none GCGGGCTGGCCGCCTGCCCTCTCTCGTGCTGGTGGTGCTGCTGGTGGTGATCGTCGTCCTCGCCTTCAACTACTGGAGCATCTCCTCCCGCCACGTCCTGC...GCAGGGCCAGGTCCAGCGCACCGAAGTGGCCCGCGGGCGGCTGGAAAAGCGCAATTCGGACCTCTTGCTGTTGGTGGACACGCACAAGAAACAGATCGACCAGAAGGAGGCCGACTACGGCCGCCTCAGCAGCCGGCTGCAGGCCAGAGAGGGCCTCGGGAAGAGATGCGAGGATGACAAG|TAGGAGGAACAGCTTGATGAGACAACCATCAAAATGGAAAA...AAAAtGGAAAAAAAAATCCTCTGGGGAAGAGTGGAAAGAGGATTGGTCATCTCGGCCATTTACTACATAAATGACTTTCGGCAAGTTACCTCTGCACCTGTAAAATGG QGQVQRTEVARGRLEKRNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLGKRCEDDK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16379 CYP4A22-AS1::STIL ENSG00000225506.2::ENSG00000123473.17 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYP4A22-AS1 ENSG00000225506.2 lncRNA - - chr1:47096653-47179271:- chr1:47172849:- chr1:47562325-47644943:- chr1:47638521:- STIL ENSG00000123473.17 protein_coding - - chr1:47250139-47314892:- chr1:47272241:- chr1:47715811-47780564:- chr1:47737913:- chr1:47164747,chr1:47164752 chr1:47272402,chr1:47272404 NA NA chr1:47630419,chr1:47630424 chr1:47738074,chr1:47738076 NA NA sense sense unknown intron CDS/splice-site duplication high none none none 3 2 0 19 259 unknown ENST00000337817.10 upstream downstream duplicates(1) AGACATCCAGCCTCCAGAACTGTGAGTACTATGCTGAAGAGAGCCCTCATCAGCACCTGACCAACCTGACCATGCTGCACCCTCATCTTAGACGTTCAGCCTCCAGAACTGTGAATACTATGCTGAAGAGAGCCCTCACCAGCACCTGACCATGCTGCACCCTCATCTCAGATGTCCAGCCTCCAGAACT|ATTCAGCGTTTGTTGGAAGCACAGTCTCTGATGCCCTGTTCCCCTAAGACAACTGC...AAGCACAGTCTTCCCCTGGCTTGCACATGAGAAAAGGTGTAAGCATTGCTGTGAGCACAG___GTGCTAGCTTGTTTTGGAATGCAGCAGGTGAGGATCAAGAGCCTGACTCTCAAATGAAGCAAGATGATACCAAAATTTCCAGTGAGGACATGAATTTTTCTGTCGATATTAATAATGAAGTCACAAGTCTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SCL/TAL1 interrupting locus 1 T-ALL leukaemia_lymphoma oncogene, fusion translocation 16380 STYXL1::RABGEF1P3 ENSG00000127952.17::ENSG00000224273.2 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2860 TRUE 1092 STYXL1 ENSG00000127952.17 protein_coding - - chr7:75996338-76048004:- chr7:76047812:- chr7:75625656-75677322:- chr7:75677130:- RABGEF1P3 ENSG00000224273.2 transcribed_unprocessed_pseudogene - - chr7:76108434-76132187:- chr7:76108762:- chr7:75737752-75761505:- chr7:75738080:- chr7:76036562,chr7:76036562,chr7:76036565 chr7:76111623,chr7:76111624,chr7:76111623 NA NA chr7:75665880,chr7:75665880,chr7:75665883 chr7:75740941,chr7:75740942,chr7:75740941 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 4 0 62 14 ENST00000340062.9 ENST00000449786.2 upstream downstream duplicates(2) GTAGCCGTCTGTGTGGCCGGTGGGGGACCTGCGGTCGGAGTGGGAGGGCCAGTCTGCACCCAAGAGGTGGAAGAGGACGGGCTTTAGGCTGGAAGCGCCTTAGAGGAGCCATTTTTCCAG|TGCCTCCAGAAAGGGTTGAGAAGATAATGGATCAGATTGAAAAGTACATCATGACTCATCTCTGTAAATATGCGTTCTGTCCAGAACCCCAGTGAGCCTGGAAGACTGGGTGCTATGGGAAATGTCATCAATCCAATGCTAGTGAAAGATGTGACTGGGGAATGCTGAAAAATGCGCACCCCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16381 STYXL1::RABGEF1P3 ENSG00000127952.17::ENSG00000224273.2 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2860 TRUE 1092 STYXL1 ENSG00000127952.17 protein_coding - - chr7:75996338-76048004:- chr7:76047662:- chr7:75625656-75677322:- chr7:75676980:- RABGEF1P3 ENSG00000224273.2 transcribed_unprocessed_pseudogene - - chr7:76108434-76132187:- chr7:76108762:- chr7:75737752-75761505:- chr7:75738080:- chr7:76036562,chr7:76036562,chr7:76036565 chr7:76111623,chr7:76111624,chr7:76111623 NA NA chr7:75665880,chr7:75665880,chr7:75665883 chr7:75740941,chr7:75740942,chr7:75740941 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 0 28 14 ENST00000248600.5 ENST00000449786.2 upstream downstream none GGGGACTCTGAGCTCCGGAAAG|TGCCTCCAGAAAGGGTTGAGAAGATAATGGATCAGATTGAAAAGTACATCATGACTCATCTCTGTAAATATGCGTTCTGTCCAGAACCCCAGTGAGCCTGGAAGACTGGGTGCTATGGGAAATGTCATCAATCCAATGCTAGTGAAAGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16382 KDELR3::DIP2A ENSG00000100196.11::ENSG00000160305.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2861 TRUE 1093 KDELR3 ENSG00000100196.11 protein_coding + + chr22:38468078-38483447:+ chr22:38468324:+ chr22:38864083-38879452:+ chr22:38864329:+ DIP2A ENSG00000160305.18 protein_coding + + chr21:46458891-46570015:+ chr21:46563835:+ chr21:47878804-47989928:+ chr21:47983748:+ chr22:38473026,chr22:38473026 chr21:46563758,chr21:46563756 NA NA chr22:38869031,chr22:38869031 chr21:47983671,chr21:47983669 NA NA sense sense out-of-frame CDS/splice-site exon translocation high none ER_lumen_protein_retaining_receptor(1%)|AMP-binding_enzyme(10%) ER_lumen_recept(0%)|AMP-binding(4%) 2 0 2 241 145 ENST00000409006.3 ENST00000479654.1 downstream upstream none CGGCGCGCGGGTGCGATCGCGGAGCTGTGAGGCGCAGGCAGGGCTCTGGGGCACCTAGAGACCGGGGCCGGAGACGTGGCAGCCGCCCTGCCCGCCAGAAAGaTTCCTAGAAGgTTGCTGGGCGCGGGCGCAC...CTGACTGGCTGGACCATGAACGTGTTCCGAATCCTCGGCGACCTGAGCCACCTCCTGGCCATGATCTTGCTGCTGGGGAAGATCTGGAGGTCCAAGTGCTGCAAGG|GGACATAGCTCTCCTCCTTCCAGATCCTCCCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGGACCCTTGGGAGACTCAC MNVFRILGDLSHLLAMILLLGKIWRSKCCK|gt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16383 KDELR3::DIP2A ENSG00000100196.11::ENSG00000160305.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2861 TRUE 1093 KDELR3 ENSG00000100196.11 protein_coding + + chr22:38468078-38483447:+ chr22:38468324:+ chr22:38864083-38879452:+ chr22:38864329:+ DIP2A ENSG00000160305.18 protein_coding + + chr21:46458891-46570015:+ chr21:46563858:+ chr21:47878804-47989928:+ chr21:47983771:+ chr22:38473026,chr22:38473026 chr21:46563758,chr21:46563756 NA NA chr22:38869031,chr22:38869031 chr21:47983671,chr21:47983669 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none ER_lumen_protein_retaining_receptor(1%)|AMP-binding_enzyme(10%) ER_lumen_recept(0%)|AMP-binding(4%) 0 1 2 241 152 ENST00000409006.3 ENST00000417564.3 downstream upstream none CGGCGCGCGGGTGCGATCGCGGAGCTGTGAGGCGCAGGCAGGGCTCTGGGGCACCTAGAGACCGGGGCCGGAGACGTGGCAGCCGCCCTGCCCGCCAGAAA...CTGACTGGCTGGACCATGAACGTGTTCCGAATCCTCGGCGACCTGAGCCACCTCCTGGCCATGATCTTGCTGCTGGGGAAGATCTGGAGGTCCAAGTGCTGCAAGG|ATCCTCCCCGGCGTGAAGGTCATCATCGCA...AGGACCCTTGGGAGACTCACACCTGGGAGAG___ATCTGGGTAAGCAGCCCCCACAATGCCACCGGGTACTACACCGTTTACGGGGAGGAGGCGCTTCATGC MNVFRILGDLSHLLAMILLLGKIWRSKCCK|dpprreghhr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16384 RNF2::NIBAN1 ENSG00000121481.11::ENSG00000135842.17 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF2 ENSG00000121481.11 protein_coding + + chr1:185045526-185102603:+ chr1:185045649:+ chr1:185014658-185071735:+ chr1:185014781:+ NIBAN1 ENSG00000135842.17 protein_coding - + chr1:184790724-184974508:- chr1:184957727:+ chr1:184759858-184943640:- chr1:184926859:+ chr1:185065456,chr1:185065451 chr1:184924305,chr1:184924297 NA NA chr1:185034588,chr1:185034583 chr1:184893437,chr1:184893429 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 3 1 0 113 8 ENST00000367509.8 unknown downstream upstream duplicates(1) CCCTGTTGTATTTCCCGAGCTCCATTGCGGAAGCTGAGGCTCGCCATATTGTGCGGCGGCGCCGGCGTCCGCGGCAGCTGATACCAGAGTCTTGCTCCGGCCGCGGCCAGCGGAGCCCTGGGCTGGGGCAGGAGCCG|GAGAAACTGAAGGCAGCCAGTTGACAAGTCCAAAATCTCCAGAGAATCCAACTTCAGATTCAGCGAGTCCTCAGGAAATTATCGTGCCTGTTTTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16385 ST3GAL2::COG4 ENSG00000157350.13::ENSG00000103051.21 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2862 TRUE 1094 ST3GAL2 ENSG00000157350.13 protein_coding - - chr16:70375977-70439237:- chr16:70404370:- chr16:70409880-70473140:- chr16:70438273:- COG4 ENSG00000103051.21 protein_coding - - chr16:70480568-70523560:- chr16:70501091:- chr16:70514471-70557463:- chr16:70534994:- NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site duplication high none |COG4_transport_protein(47%) |COG4(29%) 2 0 2 6 318 unknown ENST00000674443.1 upstream downstream none ATCTGATTGTGGTTTTGATTTGCATTTCCCTGATGATTAATGACGTTGAGCATCTTTTCCTGTGCTTGAGCCTCGCAATACCCCTGGATCAGTCATTGTGAAGGTCACCACTGCCCTCCATCCAGTG|AGAACTGGACCCCATCCTGACTGAGGTCACCCTGATGAATGCCCGCAGTGAGCTATACTTACGCTTCCTCAAGAAGAGGATTAGCTCTGATTTTGAGGcGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Esophageal carcinoma OVARY,OESOPHAGUS no_match 70422270,70472852 FALSE,FALSE 70534994,70517872 TRUE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16386 ST3GAL2::COG4 ENSG00000157350.13::ENSG00000103051.21 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2862 TRUE 1094 ST3GAL2 ENSG00000157350.13 protein_coding - - chr16:70375977-70439237:- chr16:70438949:- chr16:70409880-70473140:- chr16:70472852:- COG4 ENSG00000103051.21 protein_coding - - chr16:70480568-70523560:- chr16:70501091:- chr16:70514471-70557463:- chr16:70534994:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |COG4_transport_protein(47%) |COG4(29%) 0 3 0 5 318 ENST00000342907.3 ENST00000674443.1 upstream downstream none GCGGCGGCGGCCGGAGCGGCGAGCATGGCCCGCGCGGCGCCGGGCGCTGACTGAG|AGAACTGGACCCCATCCTGACTGAGGTCACCCTGATGAATGCCCGCAGTGAGCTATACTTACGCTTCCTCAAGAAGAGGATTAGCTCTGATTTTGAGGTGGGA...TGCGGATGGGCTTTCCTGCCACCACCTTCCAGGACATCCAGCGCGGGGTGACAAGTGCCGTGAACATCATGCACAGCAGCCTCCAGCAAGGCAAATTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Esophageal carcinoma OVARY,OESOPHAGUS no_match 70422270,70472852 FALSE,TRUE 70534994,70517872 TRUE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16388 ALG9::DIXDC1 ENSG00000086848.15::ENSG00000150764.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ALG9 ENSG00000086848.15 protein_coding - - chr11:111782195-111871581:- chr11:111844601:- chr11:111652919-111742305:- chr11:111715324:- DIXDC1 ENSG00000150764.14 protein_coding + - chr11:111927144-112022653:+ chr11:111954206:- chr11:111797868-111893377:+ chr11:111824930:- chr11:111840695,chr11:111840703,chr11:111840706 chr11:111957999,chr11:111958004,chr11:111958004 NA NA chr11:111711418,chr11:111711426,chr11:111711429 chr11:111828723,chr11:111828728,chr11:111828728 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Alg9-like_mannosyltransferase_family(58%)| Glyco_transf_22(80%)| 3 0 1 120 6 ENST00000616540.5 unknown upstream downstream multimappers(1) CAAGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGG___TTTACCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTtGC...GACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATG___GTACAGAACCCTG...AATGGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATG|GACCATCTGGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTACATTATG___GTTTGTAAGCCGAGCCTCAGTTCTCT NGFLNFNVAFALALLVLPLTSLMEYLLQRFH|gpsgcrktssglplilhygl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16389 ENSG00000258529::DIXDC1 ENSG00000258529.5::ENSG00000150764.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258529 ENSG00000258529.5 protein_coding - - chr11:111786286-111879425:- chr11:111844601:- chr11:111657010-111750149:- chr11:111715324:- DIXDC1 ENSG00000150764.14 protein_coding + - chr11:111927144-112022653:+ chr11:111954206:- chr11:111797868-111893377:+ chr11:111824930:- chr11:111840695,chr11:111840703,chr11:111840706 chr11:111957999,chr11:111958004,chr11:111958004 NA NA chr11:111711418,chr11:111711426,chr11:111711429 chr11:111828723,chr11:111828728,chr11:111828728 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Alg9-like_mannosyltransferase_family(66%),rRNA_(uridine-N3-)-methyltransferase_BTM5-like(100%)| DUF2431(100%),FDX-ACB(100%),Glyco_transf_22(81%)| 3 0 1 120 6 ENST00000622211.4 unknown upstream downstream multimappers(1) CAAGACTTCCATTGCTGTGCTGGGAGTAGCAGCTGGGGCTATCTTAGGCTGGCCATTCAGTGCAGCTCTTGG___TTTACCCATTGCCTTTGATTTGCTGGTCATGAAACACAGGTGGAAGAGTTTCTTTCATTGGTtGC...GACAGCTACTATTATGGGAAGTTGGTGATTGCACCACTCAACATTGTTTTGTATAATGTCTTTACTCCTCATGGACCTGATCTTTATG___GTACAGAACCCTG...AATGGATTTCTGAATTTCAATGTAGCCTTTGCTTTGGCTCTCCTAGTCCTACCACTGACTTCTCTTATGGAATACCTGCTGCAGAGATTTCATG|GACCATCTGGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTACATTATG___GTTTGTAAGCCGAGCCTCAGTTCTCT NGFLNFNVAFALALLVLPLTSLMEYLLQRFH|gpsgcrktssglplilhygl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16398 MTRES1::CRYBG1 ENSG00000130349.10::ENSG00000112297.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1592 TRUE 2864 TRUE 1095 MTRES1 ENSG00000130349.10 protein_coding + + chr6:107028199-107051586:+ chr6:107028271:+ chr6:107349403-107372790:+ chr6:107349475:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107035063,chr6:107035059 chr6:106508575,chr6:106508568 NA NA chr6:107356267,chr6:107356263 chr6:106956450,chr6:106956443 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 0 15 0 86 76 ENST00000311381.8 ENST00000633556.3 downstream upstream duplicates(1) CCTGGAGGCCTGCAGTCCGCGCGGCCGCGGGGAGGGACGAGAGGGCCTGACGTACAG|TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAGAAACAGTAGAAACGGGTTAGAGAGTCCCACCAGATCAAATGCCAAACCACTCTCTCCCAAAGATGTGGTAGCCTCTCCTAAGCTCCCAGAGAGAGAGAGTGAGAGGAGCAGATCTCAGAGCAGCCAACTGAAGCAAACGGACACAAGCGAGGAGGGCTCCCCGCGGGAGAATCCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16399 MTRES1::CRYBG1 ENSG00000130349.10::ENSG00000112297.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2864 TRUE 1095 MTRES1 ENSG00000130349.10 protein_coding + + chr6:107028199-107051586:+ chr6:107030107:+ chr6:107349403-107372790:+ chr6:107351311:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107035063,chr6:107035059 chr6:106508575,chr6:106508568 NA NA chr6:107356267,chr6:107356263 chr6:106956450,chr6:106956443 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Beta/Gamma_crystallin(100%),Ricin-type_beta-trefoil_lectin_domain(100%) |Crystall(100%),Ricin_B_lectin(100%) 0 1 0 44 76 ENST00000625458.1 ENST00000633556.3 downstream upstream none ATTTTTTTCCTCTGCTGAATTCCTAGTGCCCAGATTAGTGCTTGGCACATG|TCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGC M|SRAQPPEDNRRKPVLGKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16401 FAM53A::LETM1 ENSG00000174137.14::ENSG00000168924.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2865 FALSE NA FAM53A ENSG00000174137.14 protein_coding - - chr4:1617915-1684313:- chr4:1684233:- chr4:1619642-1686040:- chr4:1685960:- LETM1 ENSG00000168924.15 protein_coding - - chr4:1811479-1856156:- chr4:1819472:- chr4:1813206-1857883:- chr4:1821199:- chr4:1677488,chr4:1677492 chr4:1822444,chr4:1822445 NA NA chr4:1679215,chr4:1679219 chr4:1824171,chr4:1824172 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none |EF-hand_8(100%) 0 1 0 8 533 ENST00000308132.11 ENST00000302787.3 upstream downstream none CTTCTCGCTCCGCcCCCCCGCGGCCGCGCTCAG|GAGGAAGAGATCACGAAGGAGGAAATCGACATCCTCAGCGATGCCTGCTCTAAGCTGCAGGAGCAGAAGAAGTCACTCACCAAGGAGAAGGAGGAGCTGGAGCTGCTGAAGGAGGATGTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16402 RNF19B::AK2 ENSG00000116514.17::ENSG00000004455.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 1593 FALSE NA FALSE NA RNF19B ENSG00000116514.17 protein_coding - - chr1:32936445-32964809:- chr1:32964051:- chr1:33402046-33430410:- chr1:33429652:- AK2 ENSG00000004455.18 protein_coding - - chr1:33007986-33080996:- chr1:33024567:- chr1:33473587-33546597:- chr1:33490168:- chr1:32963066,chr1:32963071 chr1:33025305,chr1:33025307 NA NA chr1:33428667,chr1:33428672 chr1:33490906,chr1:33490908 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IBR_domain__a_half_RING-finger_domain(23%)|Adenylate_kinase(95%),Adenylate_kinase__active_site_lid(100%) IBR(0%)|AAA_17(45%),AAA_33(27%),ADK(48%),ADK_lid(100%) 5 3 4 132 2609 ENST00000235150.5 ENST00000373449.7 upstream downstream duplicates(1) GCGAGAGCAGGGTGCCCATCAGCTGCCCCGAGTGCAGCGAGCGACTCAACCCGCACGACATCCGCTTGCTGCTCGCCGACCCGCCGCTTATGCACAAGTACGAGGAGTTCATGCTGCGCCGCTACCTAGCCTCGGACCCCGACTGCCGCTGGTGCCCGGCCCCGGACTGCGG|GCACCCAGATTGGCTGAAAACTTCTGTGTCTGCCATTTAGCTACTGGGGACATGCTGAGGGCCATGGTGGCTTCTGGCTCAGAGCTAGGAAAAAAGCTGAAGGCAACTATGGATGCTGGGAAACTG___GTGAGTGATGAAATGGTAGTGGAGCTCATTGAGAAGAATTTGGAGACCCCCTTGTGCAAAAATGGTTTTCTTCTGGATGGCTTCCCTCGGACTGTGAGGCAGGCAGAAATG___CTCGATGACCTCATGGAGAAGAGGAAAGAGAAGCTTGATTCTG...CCATGAAAGATGAC___ATCACCGGGGAACCCTTGATCCGTCGATCAGATGATAATGAAAAGGCCTTGAAAATCCGCCTGCAAGCCTACCACACTCAAACCACC ESRVPISCPECSERLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCg|hpdwlktsvsai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16408 PPP1R16A::ADGRB1 ENSG00000160972.10::ENSG00000181790.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2867 TRUE 1096 PPP1R16A ENSG00000160972.10 protein_coding + + chr8:144477969-144502121:+ chr8:144478127:+ chr8:145703352-145727504:+ chr8:145703510:+ ADGRB1 ENSG00000181790.13 protein_coding + + chr8:142449430-142545009:+ chr8:142518138:+ chr8:143530791-143626370:+ chr8:143599499:+ chr8:144483793,chr8:144483793 chr8:142510898,chr8:142510895 NA NA chr8:145709176,chr8:145709176 chr8:143592259,chr8:143592256 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |7_transmembrane_receptor_(Secretin_family)(100%) |7tm_2(100%) 2 2 3 450 1126 ENST00000526183.5 ENST00000643448.1 downstream upstream none CAtGGGGCACCGCGGCTTCCGGCTATGGGTACCGCGGGCCGGAAGTGTAGCGTTGCCATGGCGAGGGCCGGGTGCGGGGCCCGCCCCCGCAGCGCCTCAGGGAGCGCGGGGCCCACTGACCCGCGGAAGCCAGCGGACCCACTTGTGCGGCGGTCGGCGCGGGGCGCaAG|AACATGGAGAAGGCGACTCTGCCGTCGGTGACGCTCATCGTGGGCTGTGGCGTGTCCTCTCTCACCCTGCTCATGCTGGTCATCATCTACGTGTCCGTGTGGAG___GTACATTCGCTCAGAGCGTTCTGTCATCCTCATCAACTTCTGCCTGTCCATCATCTCCTCCAATGCCCTCATCCTCATCGGGCAGACCCAGACCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16409 PPP1R16A::ADGRB1 ENSG00000160972.10::ENSG00000181790.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2867 TRUE 1096 PPP1R16A ENSG00000160972.10 protein_coding + + chr8:144477969-144502121:+ chr8:144478522:+ chr8:145703352-145727504:+ chr8:145703905:+ ADGRB1 ENSG00000181790.13 protein_coding + + chr8:142449430-142545009:+ chr8:142510932:+ chr8:143530791-143626370:+ chr8:143592293:+ chr8:144483793,chr8:144483793 chr8:142510898,chr8:142510895 NA NA chr8:145709176,chr8:145709176 chr8:143592259,chr8:143592256 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(80%) |7tm_2(100%),GPS(0%) 0 1 4 246 675 ENST00000533088.1 ENST00000643448.1 downstream upstream none TGCTGGCTGAGGCCCAGGGCAGCAGGTGCCAACGGTCAGGAAAGGCAGGGAGCCGAAGGCTGCCGGTGGGCGCTTCGCGTTTTGTTCCAAGGCGAAG|ACCCTCCTCCTCCGCCCCCCCGCAGCTCGGGCCCTGGTCGTGGCGCGGCTGCCGCACGGTGCCCCTCGACGCCCTCCGGACGCGCTGCCTCTGTGACCGGCTCTCCACCTTCGCCATCTTAGCCCAG...TTCCTGCACTTCTTCTTCCTGTCCTCCTTCTGCTGGGTGCTCACCGAGGCCTGGCAGTCCTACATGGCcGTGACGGGCCACCTCCGGAACCGCCTCATCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16410 PPP1R16A::ADGRB1 ENSG00000160972.10::ENSG00000181790.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2867 TRUE 1096 PPP1R16A ENSG00000160972.10 protein_coding + + chr8:144477969-144502121:+ chr8:144478127:+ chr8:145703352-145727504:+ chr8:145703510:+ ADGRB1 ENSG00000181790.13 protein_coding + + chr8:142449430-142545009:+ chr8:142510932:+ chr8:143530791-143626370:+ chr8:143592293:+ chr8:144483793,chr8:144483793 chr8:142510898,chr8:142510895 NA NA chr8:145709176,chr8:145709176 chr8:143592259,chr8:143592256 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(80%) |7tm_2(100%),GPS(0%) 0 1 3 450 675 ENST00000526183.5 ENST00000643448.1 downstream upstream none CAtGGGGCACCGCGGCTTCCGGCTATGGGTACCGCGGGCCGGAAGTGTAGCGTTGCCATGGCGAGGGCCGGGTGCGGGGCCCGCCCCCGCAGCGCCTCAGGGAGCGCGGGGCCCACTGACCCGCGGAAGCCAGCGGACCCACTTGTGCGGCGGTCGGCGCGGGGCGCaAG|ACCCTCCTCCTCCGCCCCCCCGCAGCTCGGGCCCTGGgCGTGGCGCGGCTGCCGCACGGTGCCCCTCGACGCCCTCCGGACGCGCTGCCTCTGTGACCGGCTCTCCACCTTCGCCATCTTAGCCCAGCTCAGCGCCGACGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16411 PPP1R16A::ADGRB1 ENSG00000160972.10::ENSG00000181790.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2867 TRUE 1096 PPP1R16A ENSG00000160972.10 protein_coding + + chr8:144477969-144502121:+ chr8:144478522:+ chr8:145703352-145727504:+ chr8:145703905:+ ADGRB1 ENSG00000181790.13 protein_coding + + chr8:142449430-142545009:+ chr8:142518138:+ chr8:143530791-143626370:+ chr8:143599499:+ chr8:144483793,chr8:144483793 chr8:142510898,chr8:142510895 NA NA chr8:145709176,chr8:145709176 chr8:143592259,chr8:143592256 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |7_transmembrane_receptor_(Secretin_family)(100%) |7tm_2(100%) 0 1 3 246 1126 ENST00000533088.1 ENST00000643448.1 downstream upstream none AACGGTCAGGAAAGGCAGGGAGCCGAAGGCTGCCGGTGGGCGCTTCGCGgTTTGTTCCAAGGCGAAG|AACATGGAGAAGGCGACTCTGCCGgCGGTGACGC...TGTGGCcTGTCCTCTCTCACCCTGCTCATGCTGGTCATCATCTACGTGTCCGTGTGGAG___GTACATTCGCTCAGAGCGTTCTGTCATCCTCATCAACTTCTGCCTGTCCATCATCTCCTCCAATGCCCaCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16415 AHDC1::ARHGEF2 ENSG00000126705.15::ENSG00000116584.22 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHDC1 ENSG00000126705.15 protein_coding - + chr1:27534035-27604431:- chr1:27540153:+ chr1:27860546-27930942:- chr1:27866664:+ ARHGEF2 ENSG00000116584.22 protein_coding - - chr1:155946851-156007070:- chr1:155966887:- chr1:155916642-155976861:- chr1:155936678:- chr1:27540788,chr1:27540787 chr1:155969123,chr1:155969124 NA NA chr1:27867299,chr1:27867298 chr1:155938914,chr1:155938915 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |PH_domain(100%),RhoGEF_domain(100%) |C1_1(2%),PH_16(100%),RhoGEF(100%) 0 3 1 10 720 unknown ENST00000673475.1 downstream downstream duplicates(1) TGACTTCCCTACCCAGACCCCCAGCTTGGCTAGACCCCCTGGATTCACAGCTCTGCTAGG___CTGGAGATGCCATATGTAAAGACAGGCATTCCTGATGGGTT...GAAAGAGCAAGAACCATGGAACCAGGCAATCCCCAGGGGCCCTTCCTGGCTCTACCTTCTGTGCTTCAATGACCAG|CCTGCAATGTGACTATCCACAACCGCTGTAAAGACACCCTCGCCAACTGTACCAAGGTCAAGCAGAAG___CAACAGAAAGCGGCCCTGCTGAAGAACAACACCGCCTTGCAGTCCGTTTCTCTTCGAAGTAAGA___CAACCATCCGGGAGCGGCCAAGCTCGGCCATCTACCCCTCCGACAGCTTCCGGCAGTCCCTCCTGGGCTCCCGCCGTGGCCGCTCCTCCTTGTCTTTAGCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6738 chr1:155951273-155951336:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16416 AK4::JAK1 ENSG00000162433.15::ENSG00000162434.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AK4 ENSG00000162433.15 protein_coding + + chr1:65147549-65232145:+ chr1:65218926:+ chr1:65613232-65697828:+ chr1:65684609:+ JAK1 ENSG00000162434.14 protein_coding - + chr1:64833223-65067754:- chr1:64962387:+ chr1:65298906-65533437:- chr1:65428070:+ chr1:65221218,chr1:65221219 chr1:64942961,chr1:64942956 NA NA chr1:65686901,chr1:65686902 chr1:65408644,chr1:65408639 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Adenylate_kinase(70%),Adenylate_kinase__active_site_lid(58%)| AAA_17(100%),AAA_18(100%),ADK(90%),ADK_lid(1%),Cytidylate_kin(100%)| 3 0 1 790 4 ENST00000545314.5 unknown downstream upstream none CTCCTTGATG___GTTTTCCTAGGACATTAGGACAAGCCGAAGCCCTGGACAAAATCTGTGAAGTGGATCTAGTGATCAGTTTGAATATTCCATTTGAAACACTTAAAGATCGTCTCAGCCGCCGTTGGATTCACCCTCCTAGCGGAAGGGTATATAACCTGGACTTCAATCCACCTCATGTACAT|CAGGTCTTGCCTCGGGACTGGGCAGTTTATCCGCAGAGCACCAAGGAAGAATGTGTGCCCACTGCCAACTACAAAG LLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVH|qvlprdwavypqstkeecvptanyk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16422 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2870 TRUE 1097 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151669664:- chr5:151040657-151066536:- chr5:151049225:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822963:- chr5:151202074-151304412:- chr5:151202524:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Follistatin/Osteonectin-like_EGF_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%)|Neurotransmitter-gated_ion-channel_transmembrane_region(3%) FOLN(100%),Kazal_1(100%),Kazal_2(100%)|Neur_chan_memb(0%) 1 1 1 12863 9 ENST00000231061.9 ENST00000274576.9 upstream downstream duplicates(1) TGATGATGGTGCAGAGGAAACCGAAGAGGAGGTGGTGGCGGAAA___ATCCCTGCCAGAACCACCACTGCAAACACGGCAAGGTGTGCGAGCTGGATGAGAACA...TGCAGCAATGACAACAAGACCTTCGACTCTTCCTGCCACTTCTTTGCCACAAAGTGCACCCTGGAGGGCACCAAGAAGGGCCACAAGCTCCACCTGGACTACATCGGGCCTTGCAAAT|GAGGATGAAGCTGGAGAAGGCCGCTTTAACTTCTCTGCCTATGGGATGGGCCCAGCCTGTCTACAGGCCAAGGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGA CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16423 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2870 TRUE 1097 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151669664:- chr5:151040657-151066536:- chr5:151049225:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822987:- chr5:151202074-151304412:- chr5:151202548:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Follistatin/Osteonectin-like_EGF_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%)|Neurotransmitter-gated_ion-channel_transmembrane_region(10%) FOLN(100%),Kazal_1(100%),Kazal_2(100%)|Neur_chan_memb(0%) 1 0 1 12863 7 ENST00000231061.9 ENST00000455880.2 upstream downstream none TGCAGCAATGACAACAAGACCTTCGACTCTTCCTGCCACTTCTTTGCCACAAAGTGCACCCTGGAGGGCACCAAGAAGGGCCACAAGCTCCACCTGGACTACATCGGGCCTTGCAAAT|AGCCCCATGTTGAATCTATTCCAGGAGGATGAAGCTGGAGAAGGCC...GGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGA CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16426 ENSG00000226197::NFIB ENSG00000226197.4::ENSG00000147862.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2871 TRUE 1098 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ NFIB ENSG00000147862.18 protein_coding - - chr9:14081843-14398983:- chr9:14088326:- chr9:14081842-14398982:- chr9:14088325:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |CTF/NF-I_family_transcription_modulation_region(1%) none 0 1 1 183 597 ENST00000664438.1 ENST00000380934.8 downstream downstream none CTGACCTGTACCTCAGAGAAAGGAAGGAAAGAGAAGGGAAAATAGAAACAGAAG___CAATGTGTGAACGATCCAGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|TCCTGGTACCTGGGCTAGCTTGGTTCCTTTCCAAcaGTCAAATAGGACACCCATCTTACCGGCCAATGTCCAAAATTACGGTTTGAACATAATTGGAGAACCTTTCCTTCAAGCAGAAACAAGCAACTGAGGGAAAAAGAAACACA...TTTTTAAATAAAAAAAAAGGAAAAGAGGAAGACTGGACAAAACAACACAAAGGCAGAAAGGAAAGAAACTGAAGAAAGAAGATAATAGACCAGCAATTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear factor I/B 1 adenoid cystic carcinoma, lipoma epithelial fusion translocation 16427 ENSG00000226197::NFIB ENSG00000226197.4::ENSG00000147862.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 2871 TRUE 1098 ENSG00000226197 ENSG00000226197.4 lncRNA + + chr9:13386130-13836571:+ chr9:13553324:+ chr9:13386129-13836570:+ chr9:13553323:+ NFIB ENSG00000147862.18 protein_coding - - chr9:14081843-14398983:- chr9:14179780:- chr9:14081842-14398982:- chr9:14179779:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |CTF/NF-I_family_transcription_modulation_region(100%) |CTF_NFI(100%) 1 0 1 183 630 ENST00000664438.1 ENST00000380934.8 downstream downstream none CTGACCTGTACCTCAGAGAAAGGAAGGAAAGAGAAGGGAAAATAGAAACAGAAG___CAATGTGTGAACGATCCAGTTGCTCTACGTCCTTGCCAGCAGTTAGTATG|ATTCTGGACAATCAGGAAGTCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear factor I/B 1 adenoid cystic carcinoma, lipoma epithelial fusion translocation 16431 PATZ1::LIMK2 ENSG00000100105.18::ENSG00000182541.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PATZ1 ENSG00000100105.18 protein_coding - - chr22:31325804-31346346:- chr22:31335692:- chr22:31721790-31742332:- chr22:31731678:- LIMK2 ENSG00000182541.18 protein_coding + - chr22:31212239-31280080:+ chr22:31212330:- chr22:31608225-31676066:+ chr22:31608316:- chr22:31334703,chr22:31334705 chr22:31214467,chr22:31214466 NA NA chr22:31730689,chr22:31730691 chr22:31610453,chr22:31610452 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR deletion/read-through/5'-5' low none BTB/POZ_domain(100%),C2H2-type_zinc_finger(66%),Putative_zinc-finger_between_two_C2H2_zinc-fingers_on_Patz(24%),Zinc_finger__C2H2_type(73%)| AT_hook(100%),BTB(100%),zf-C2H2(14%),zf-C2H2_4(9%),zf-C2H2_6(100%),zf-C2H2_assoc3(0%),zf-met(0%)| 0 5 0 184 33 ENST00000266269.10 unknown upstream downstream low_entropy(1) GTACTTGCGGGCAGCATACATGGCAGACCACCTGAAGAAGCACAGCGAGGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAG|CTCCTGCCGCCGCCGCCTCAGGCGCGGGAAGACCACAGCCCCAGGCGCGAACGGGATGCACCGCCTACGGCGCCCTGGGAGGACCAAACCACACCTGGCACAGGGGACTGCCCGCCGACGCC YLRAAYMADHLKKHSEGPSNFCSICNR|apaaaasgagrpqpqartgctaygalggpnhtwhrglpad NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger protein 278 (ZSG) 1 Ewing sarcoma mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16432 PIK3C2B::PLEKHA6 ENSG00000133056.14::ENSG00000143850.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3C2B ENSG00000133056.14 protein_coding - - chr1:204422628-204494805:- chr1:204468870:- chr1:204391756-204463933:- chr1:204437998:- PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204274809:- chr1:204187981-204346793:- chr1:204243937:- chr1:204466559,chr1:204466563 chr1:204289164,chr1:204289165 NA NA chr1:204435687,chr1:204435691 chr1:204258292,chr1:204258293 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |PH_domain(100%) |PH(100%),PH_11(100%) 1 2 2 84 608 ENST00000684373.1 ENST00000564627.2 upstream downstream mismappers(1) CTCAACTTGAAATCGACCTATGATGCGGAGATGTTGCGGGATGCCACCAGGGGCTGGAAGGAGGGCCGAGGGCCGCTGGACTTCAGCAAAGACACCTCTGGAAAACCCGTGGCCAGGAGCAAGACTATGCCCCCTCAGGTGCCCCCCCGCACCTATGCCTCCCGCTATGGCAACCGAAAGAATGCGACGCCTGGCAAGAACCGCCGGATTTCTGCAGCCCCG|CCACAATGAAAGACGGAACACATTTCTACACCCAGTGACTGGCCAGGTCCCAGAGGAAAACAAAAAATTTGACTTGAAAAT___ATC LNLKSTYDAEMLRDATRGWKEGRGPLDFSKDTSGKPVARSKTMPPQVPPRTYASRYGNRKNATPGKNRRISAAP|pq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 204442526 FALSE 204261508 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16435 ENSG00000259579::ASB7 ENSG00000259579.1::ENSG00000183475.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000259579 ENSG00000259579.1 lncRNA + + chr15:100716249-100828497:+ chr15:100819561:+ chr15:101256454-101368702:+ chr15:101359766:+ ASB7 ENSG00000183475.13 protein_coding + + chr15:100602589-100651701:+ chr15:100648323:+ chr15:101142794-101191906:+ chr15:101188528:+ chr15:100823445 chr15:100632985 NA NA chr15:101363650 chr15:101173190 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |SOCS_box(100%) |Ank(0%),Ank_2(0%),SOCS_box(100%) 2 1 0 9 69 ENST00000559755.1 ENST00000332783.12 downstream upstream none TCAATCTTTCACAG___AGCCCACCATGAAATCTGTCCCAAATCATGGAACCCCGAGGTGAAAGGCCCCCAGGCATGCCAACACATGGCAGACAAATCCAGTTGTGTCCAGGGATGGCGTTCCCTCCAGTTTTCTGAAAGACGCTCCCATATTCCTTAAGCACAG|GACAGCCCAGAAACTTGCAGGACCTGTGCCGAATTAAAATTCGACAATGTATAGGCCTTCAAAACCTAAAGCTACTTGATGAACTACCAATTGCCAAGGTCATGAAAGACTACTTAAAACACAAATTTGATGATATCTGATATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16439 KAZN::PRDM2 ENSG00000189337.17::ENSG00000116731.23 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:14180592:+ chr1:14219287-15444539:+ chr1:14507087:+ PRDM2 ENSG00000116731.23 protein_coding + + chr1:13700188-13825079:+ chr1:13773078:+ chr1:14026683-14151574:+ chr1:14099573:+ chr1:14379694,chr1:14379693 chr1:13770049,chr1:13770045 NA NA chr1:14706190,chr1:14706189 chr1:14096544,chr1:14096540 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_6(100%) 0 2 0 5 280 ENST00000636203.1 ENST00000311066.10 downstream upstream none CTTTTCTACCCACTGAGAAGGAGACTCTGAAGAGTTCCATGATATTGATGAGGCACCTCTTAATGGATGCTCAG|GGAAGAAAAAATCCCAGGAAAATAAAAACAAAGGAAACAAAATCCAAGACATACAACTGAAGACAAGTGAGCCAGATTTCACCTCTGCAAATATGAGAGATTCTGCAGAAG___GTCCTAAAGAAGACGAAGAGAAGCCTTCAGCCTCAGCACTTGAGCAGCCG...CCCTCCAGGAGGTGGCCAGTCAGGAGGTGCCTCCAGAACTAGCAACCCCTGCCCCTGCCTGGGAGCCACAGCCAGAACCAGACGAGCGATTAGAgGCGGC FLPTEKETLKSSMILMRHLLMDAQ|grknprkiktketksktyn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PR/SET domain 2 2 glioma, colon adenocarcinoma, gastric carcinoma, ovarian carcinoma, HNSCC epithelial, other TSG other, frameshift 16461 MTREX::SHISAL2B ENSG00000039123.16::ENSG00000145642.12 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE TRUE 1594 FALSE NA FALSE NA MTREX ENSG00000039123.16 protein_coding + + chr5:55307989-55425579:+ chr5:55358698:+ chr5:54603817-54721407:+ chr5:54654526:+ SHISAL2B ENSG00000145642.12 protein_coding + + chr5:64690442-64718190:+ chr5:64717889:+ chr5:63986269-64014017:+ chr5:64013716:+ chr5:55366335 chr5:64706018 NA NA chr5:54662163 chr5:64001845 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%)| DEAD(100%),Helicase_C(100%)| 8 7 2 308 11 ENST00000230640.10 ENST00000389074.6 downstream upstream none TTAACATGCCAGCTAGAACTGTTTTATTTACAAATGCCCGCAAATTTGATGGGAAGGATTTCCGATGG___ATTTCTTCTGGTGAATACATTCAGATGTCTGGTCGTGCTGGAAGGAGAGGAATGGATGATAGAGGAATTGTAATTCTTATGGTAGATGAAAAGATGAGCCCAACAATTGGAAAACAATTACTTAAG|GCAAGTCAAATGGAAAAACCAAAGCCCTCAATTCAAATGCAGCATCAAATGCAACAAATGAAACATACTATGAAGCTGATGATATAATTCAAGAAAAAACAATGGATGCAACACAAATCCAC NMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK|asqmekpkpsiqmqhqmqqmkhtmklmi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16462 ENSG00000289985::MTREX ENSG00000289985.1::ENSG00000039123.16 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE TRUE 1595 FALSE NA FALSE NA ENSG00000289985 ENSG00000289985.1 lncRNA - - chr19:11676606-11694991:- chr19:11694799:- chr19:11787421-11805806:- chr19:11805614:- MTREX ENSG00000039123.16 protein_coding + + chr5:55307989-55425579:+ chr5:55324132:+ chr5:54603817-54721407:+ chr5:54619960:+ chr19:11694456,chr19:11694458 chr5:55323285,chr5:55323283 NA NA chr19:11805271,chr19:11805273 chr5:54619113,chr5:54619111 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |DEAD/DEAH_box_helicase(100%),DSHCT_(NUC185)_domain(100%),Helicase_conserved_C-terminal_domain(100%),rRNA-processing_arch_domain(100%) |DEAD(100%),DSHCT(100%),Helicase_C(100%),rRNA_proc-arch(100%) 5 9 3 13 465 ENST00000702307.1 ENST00000230640.10 upstream upstream mismatches(1) GAAAAAGCCCGCGGCGTCTTCTACACGCCACTTCGCTGGGCTCCTGTCTCTGTCGCTGAGAGGCACTCTGGAGAGTCTGCGGCAGCCTCTGTCACACAGGGACCTGCACTGGTCGTGGGAGCCGCAGAGAGGCCCCCGGGACACGGAGGAATTCGGAAAATG|TTTGGCAGACCTGATGCCCAGAGTCAAGGTACAATCAGTTGAAACTGTTGAAGGGTGTACACATGAG___GTTGCACTTCCTGCAGAAGAG...ATTTACCACTTAAACCACGAGTTGGAAAAGCTGCTAAG___...TTCTTGATGCTTTTCAAAGAGAGGCCATTCAGTGTGTTGACAATAATCAGTCTGTTCTAGTATCTGCACATACCTCAGCGGGAAAAACAGTATGCGCCGA...___GTATGCCATTGCATTGGCCTTAAGGGAAAAGCAGCGTGTAATATTTACCAGCCCAATTAAGGCTCTGAGTAACCAAAAATACCGTGAAATGTATGAAGAA...GTTTGATGACTGGTGATGTTACTATTAATCCTACGGCATCTTGTCTTGTTATGACCACAGAG___ATTTTGAGAAGTATGCTTTACAGAGGTTCCGAAGTTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16465 CWC27::LINC02955 ENSG00000153015.17::ENSG00000256995.8 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CWC27 ENSG00000153015.17 protein_coding + + chr5:64766368-65102412:+ chr5:64785579:+ chr5:64062195-64398239:+ chr5:64081406:+ LINC02955 ENSG00000256995.8 lncRNA + - chr12:22699859-23188807:+ chr12:22976321:- chr12:22852793-23341741:+ chr12:23129255:- chr5:64786360 chr12:22984358 NA NA chr5:64082187 chr12:23137292 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(99%)| Pro_isomerase(91%)| 0 1 4 171 1 ENST00000693303.1 unknown downstream downstream mismatches(2) CTCATCCCCCGTAAGGAGCAGAGTCCTTTGTACTGACCAAGATGAGCAACATCTACATCCAGGAGCCTCCCACGAATGGGAAG___GTTTTATTGAAAACTACA...ACATGTTGCGACTGTCAGAAGTAGACATTGATGATGACGAAAGACCACATAATCCACACAAAATAAAAAGCTGTGAG|GCCCCATTATCATGAAGAG___ATCTGAAGAGAAGAGAAACGTGAGGGAAGAACAGGCGGTGGCAGCCgGAAGAGAGTGGGTG MLRLSEVDIDDDERPHNPHKIKSCE|apls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16466 SPRY3::ENOX2 ENSG00000168939.13::ENSG00000165675.19 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2875 TRUE 1099 SPRY3 ENSG00000168939.13 protein_coding + + chrX:155612572-155782459:+ chrX:155612647:+ chrX:154842233-155012121:+ chrX:154842308:+ ENOX2 ENSG00000165675.19 protein_coding - - chrX:130622325-130903234:- chrX:130783690:- chrX:129756299-130037208:- chrX:129917664:- chrX:155706702,chrX:155706698 chrX:130847579,chrX:130847583 NA NA chrX:154936363,chrX:154936359 chrX:129981553,chrX:129981557 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%) 1 2 1 11 76 ENST00000676089.1 ENST00000686943.1 downstream downstream none CGCTGATCTCCGGGCAGACTCTGTCGCGCAACTGGCACAGATCGTGACGACAACCCTGCGGCAAGGCAGGAGTGGCCTTCCTCTCCGCCAGGGTTAAG|GATTGAACCAGCTGCCCTTTGACCCTGCTAACAACAACGAGCCCCT...CTGGTCACAGAAGGCCTCATTGAGAATGGAGGGGAATCAAGCAAGAAAAGAAAGAGAACAAATACTCCTTCAG___CCGATAACAGTAGAACTCTGAACGTGGATTCCACTGCAATGACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16467 SPRY3::ENOX2 ENSG00000168939.13::ENSG00000165675.19 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2875 TRUE 1099 SPRY3 ENSG00000168939.13 protein_coding + + chrX:155612572-155782459:+ chrX:155612647:+ chrX:154842233-155012121:+ chrX:154842308:+ ENOX2 ENSG00000165675.19 protein_coding - - chrX:130622325-130903234:- chrX:130703254:- chrX:129756299-130037208:- chrX:129837228:- chrX:155706702,chrX:155706698 chrX:130847579,chrX:130847583 NA NA chrX:154936363,chrX:154936359 chrX:129981553,chrX:129981557 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%) 0 1 0 11 78 ENST00000695325.1 ENST00000338144.8 downstream downstream none GCAGGAGTGGCCTTCCTCTCCGCCAGGGTTAAG|CCGATAACAGTAGAACTCTGAACGTGGATTCCACTGCAATGACACTACCTATGTCTGATCCAACTGCATGGGCCACAGCAATGAATAATCTTGGAATGGCACCGCTGGGAATTGCCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16469 CHN2::CREB5 ENSG00000106069.26::ENSG00000146592.17 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHN2 ENSG00000106069.26 protein_coding + + chr7:29146547-29514328:+ chr7:29146959:+ chr7:29186163-29553944:+ chr7:29186575:+ CREB5 ENSG00000146592.17 protein_coding + - chr7:28299321-28825894:+ chr7:28303140:- chr7:28338940-28865511:+ chr7:28342759:- chr7:29169930 chr7:28361172 NA NA chr7:29209546 chr7:28400791 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' high none none none 0 1 1 9 1 ENST00000439384.6 unknown downstream downstream mismappers(2) TGAAGAGCATCGGCGGGGTGCCATTCAG___GACTTACTTGCAAGCCCAGGATTTACATTTGGAAAGCGAGTGGTGTTTGATTCCCACTGTTTAAAAAGGCAACACACGTTCGCTGATGGTCTACATTCCAGCTGCACTAGC|GATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACCGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCAGCACCTCCCAAGCTA...AAAAATATTGGTGAGGGGTGATGGGAGAGCAACCCTATATTCCGCCATCATTCTGTGAACAGCATTGCTTTTCTTTCAAGTTTGATTTTTATAGTAATTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16486 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167669,chr5:32167671 NA NA chr5:32106202,chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167775,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 1 1 3 425 ENST00000503441.1 ENST00000265070.7 upstream downstream none TAGATTCTCACGTGAGTGTGAACCCTATTGTGAACTGCATATGCGAGGGATCTAGGTTGCATGTTCCTTATGAGAATCTAATGCCTGATGATCTGTCATTGTCTCCCATCACCCCCAGATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 16506 NFIX::GCDH ENSG00000008441.19::ENSG00000105607.13 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2879 TRUE 1100 NFIX ENSG00000008441.19 protein_coding + + chr19:12995475-13098796:+ chr19:13025552:+ chr19:13106289-13209610:+ chr19:13136366:+ GCDH ENSG00000105607.13 protein_coding + + chr19:12891160-12914207:+ chr19:12913995:+ chr19:13001974-13025021:+ chr19:13024809:+ chr19:13028102,chr19:13028097,chr19:13028097 chr19:12907108,chr19:12907100,chr19:12907101 NA NA chr19:13138916,chr19:13138911,chr19:13138911 chr19:13017922,chr19:13017914,chr19:13017915 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none MH1_domain(100%),Nuclear_factor_I_protein_pre-N-terminus(100%)| MH1(100%),NfI_DNAbd_pre-N(100%)|Acyl-CoA_dh_1(0%) 47 36 38 753 115 ENST00000592199.6 ENST00000591050.1 downstream upstream duplicates(27),mismatches(14) GGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGG|GTGAGCTCATTCATTCCACAGCTGCTGCTGAAACAATGACTCCCACAGAACCATCTCCAGACCCTCACCCCACCCCGAGTTCCGGGTCAGAAAGTTGAACTGTATCCTGGACATGTGGATGTCCCTGGCCACCGAAAGTGGCTCAGATAAACAAGGACAACACAGAACTCATGTTCTTGTCTCTGCCAGAGAAGCCACCACCTACCGGAAACCACCACAAGCTGGAAAGCAGACAGCAGTGATGTGCTTGTAAGCATTTAGCAACTGGC GKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTP|gelihstaaaetmtptepspdphptpssgses* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma LUNG,LUNG exact 13136366|13136366,13136366 TRUE|TRUE,TRUE 13002930|13004297,13002085 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16507 NFIX::GCDH ENSG00000008441.19::ENSG00000105607.13 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2879 TRUE 1100 NFIX ENSG00000008441.19 protein_coding + + chr19:12995475-13098796:+ chr19:13025368:+ chr19:13106289-13209610:+ chr19:13136182:+ GCDH ENSG00000105607.13 protein_coding + + chr19:12891160-12914207:+ chr19:12913995:+ chr19:13001974-13025021:+ chr19:13024809:+ chr19:13028102,chr19:13028097,chr19:13028097 chr19:12907108,chr19:12907100,chr19:12907101 NA NA chr19:13138916,chr19:13138911,chr19:13138911 chr19:13017922,chr19:13017914,chr19:13017915 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none MH1_domain(56%),Nuclear_factor_I_protein_pre-N-terminus(100%)| MH1(56%),NfI_DNAbd_pre-N(100%)|Acyl-CoA_dh_1(0%) 1 0 3 567 115 ENST00000587760.5 ENST00000591050.1 downstream upstream duplicates(1) CGGGCGTTGGGCTTTGCCGGGTGCTTCAGATCAATG___GATGAGTTCCACCCGTTCATCGAGGCACTGCTGCCTCACGTCCGCGCTTTCTCCTACACCTGGTT...GACATCCGGCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAG|GTGAGCTCATTCATTCCACAGCTGCTGCTGAAACAATGACTCCCACAGAACCATCTCCAGACCCTCACCCCACCCCGAGTTCCGGGTCAGAAAGTTGAACTGTATCCTGGACATGTGGATGTCCCTGGCCACCGAAAGTGGCTCAGATAAACAAGGACAACACAGAACTCATGTTCT DIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADK|vssfipqlllkq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma LUNG,LUNG exact 13136366|13136366,13136366 FALSE|FALSE,FALSE 13002930|13004297,13002085 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16509 TESC::FBXO21 ENSG00000088992.18::ENSG00000135108.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1596 TRUE 2880 TRUE 1101 TESC ENSG00000088992.18 protein_coding - - chr12:117038923-117099479:- chr12:117056806:- chr12:117476728-117537284:- chr12:117494611:- FBXO21 ENSG00000135108.16 protein_coding - - chr12:117141991-117190470:- chr12:117177641:- chr12:117579796-117628275:- chr12:117615446:- chr12:117053079 chr12:117185880 NA NA chr12:117490884 chr12:117623685 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Hemimethylated_DNA-binding_protein_YccV_like(100%),Transglutaminase-like_superfamily(100%) |Transglut_core2(100%),YccV-like(100%) 17 34 37 847 689 ENST00000470612.5 ENST00000622495.5 upstream downstream duplicates(7),low_entropy(1),mismatches(4) GCGCCCCGGGGCCCCCGCCGCGGGCACCATGGGCGCTGCCCACTCCGCGTCTGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCT___TCTCATCGGATCAGATCGAGCAGCTCCATCGGAGATTTAAGCAGCTGAGTGGAGATCAGCCTACCATTCG___CAAGGAGAACTTCAACAATGTCCCGGACCTGGAGCTCAACCCCATCCGATCCAAAATTGTTCGTGCCTTCTTCGACAACAG|AAAAGCTTTGACCTGGAAATACTACGCAAAAAAAATTCTTTACTACCTGCGGCAACAGAAGATCTTAAATAATCTTAAGGCCTTTCTTCAGCAGCCAGATGACTATGAGTCGTATCTTGAAG___GTGCTGTATATATTGACCAGTACTGCAATCCTCTCTCCGACATCAGCCTCAAAGACATCCAGGCCCAAATTGACAGCATCGTGGAGCTTGTTTGCAAAACCCTTCGGGGCATAAACAGTCGCCACCCCAGCTTGGCCTTCAAGGCAG___GTGAATCATCCATGATAATGGAAATAGAACTCCAGAGCCAGGTGCTGGATGCCATGAACTATGTCCTTTACGACCAACTGAAGTTCAAGGGGAATCGAATGGATTACTATAATGCCC MGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLSGDQPTIRKENFNNVPDLELNPIRSKIVRAFFDNr|KALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 117484364|117486824 FALSE|FALSE 117584082|117584082 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16510 TESC::FBXO21 ENSG00000088992.18::ENSG00000135108.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1597 TRUE 2880 TRUE 1101 TESC ENSG00000088992.18 protein_coding - - chr12:117038923-117099479:- chr12:117075271:- chr12:117476728-117537284:- chr12:117513076:- FBXO21 ENSG00000135108.16 protein_coding - - chr12:117141991-117190470:- chr12:117177641:- chr12:117579796-117628275:- chr12:117615446:- chr12:117053079 chr12:117185880 NA NA chr12:117490884 chr12:117623685 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Hemimethylated_DNA-binding_protein_YccV_like(100%),Transglutaminase-like_superfamily(100%) |Transglut_core2(100%),YccV-like(100%) 1 5 10 863 689 ENST00000470612.5 ENST00000622495.5 upstream downstream duplicates(1),mismatches(1) GCCGCGGGCACCATGGGCGCTGCCCACTCCGCGTCTGAGGAGGTGCGGGAGCTCGAGGGCAAGACCGGCT___TCTCATCGGATCAGATCGAGCAGCTCCATCGGAGATTTAAGCAGCTGAGTGGAGATCAGCCTACCATTCG|AAAAGCTTTGACCTGGAAATACTACGCAAAAAAAATTCTTTACTACCTGCGGCAACAGAAGATCTTAAATAATCTTAAGGCCTTTCTTCAGCAGCCAGATGACTATGAGTCGTATCTTGAAG___GTGCTGTATATATTGACCAGTACTGCAATCCTCTCTCCGACATCAGCCTCAAAGACATCCAGGCCCAAATTGACAGCATCGTGGAGCTTGTTTGCAAAACCCTTCGGGGCATAAACAGTCGCCACCCCAGCTTGGCCTTCAAGGCAGG...AATGGAAATAGAACTCCAGAGCCAGGTGCTGGATGCCATGAACTATGTCCTTTACGACCAACTGAAGTTCAAGGGGAATCGAATGGATTACTATAATGCCC MGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLSGDQPTIr|KALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 117484364|117486824 FALSE|FALSE 117584082|117584082 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16511 PTK2::TSNARE1 ENSG00000169398.20::ENSG00000171045.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1598 TRUE 2881 TRUE 1102 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140664917:- chr8:141667999-142012315:- chr8:141675016:- TSNARE1 ENSG00000171045.16 protein_coding - - chr8:142212080-142403182:- chr8:142300647:- chr8:143293441-143484543:- chr8:143382008:- chr8:140660624 chr8:142305875 NA NA chr8:141670723 chr8:143387236 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FERM_N-terminal_domain(100%),FERM_central_domain(100%),Focal_adhesion_targeting_region(52%),Protein_kinase_domain(100%)|SNARE_domain(100%) FERM_M(100%),FERM_N_2(100%),Focal_AT(39%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Myb_DNA-bind_5(49%),SNARE(100%) 13 9 31 1096 226 ENST00000696786.1 ENST00000307180.4 upstream downstream duplicates(2),mismatches(2),multimappers(1) CAGCCCCAGGAAATCAGCCCCCCTCCTACTGCCAACCTGGACCGGTCGAATGATAAGGTGTACGAGAATGTGACGGGCCTGGTGAAAGCTGTCATCGAGATGTCCAGTAAAATCCAGCCAGCCCCACCAGAGGAGTATGTCCCTATGGTGAAG___GAAGTCGGCTTGGCCCTGAGGACATTATTGGCCACTGTGGATGAGACCATTCCCCTCCTACCAGCCAGCACCCACCGAGAG|CAGAGTCCCCAGGCCCCGTTTGCCGAGCTGGCTGATGATGAGAAGGTCTTTAACGGGAGTGACAACATGTGGCAGGGCCAGGAGCAGGCGCTGCTCCCGGACATCACTGAAGAGGACCTGGAGGCCATCCGGCTGCGGGAGGAGGCCATCCTGCAGATGGAG___AGCAACTTGCTGGATGTGAATCAGATCATCAAGGACTTGGCCTCCATGGTGTCAGAGCAAGGAGAAGCTGTTG QPQEISPPPTANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHRE|QSPQAPFAELADDEKVFNGSDNMWQGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16512 PTK2::TSNARE1 ENSG00000169398.20::ENSG00000171045.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1599 TRUE 2881 TRUE 1102 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140664917:- chr8:141667999-142012315:- chr8:141675016:- TSNARE1 ENSG00000171045.16 protein_coding - - chr8:142212080-142403182:- chr8:142300644:- chr8:143293441-143484543:- chr8:143382005:- chr8:140660624 chr8:142305875 NA NA chr8:141670723 chr8:143387236 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none FERM_N-terminal_domain(100%),FERM_central_domain(100%),Focal_adhesion_targeting_region(52%),Protein_kinase_domain(100%)|SNARE_domain(100%) FERM_M(100%),FERM_N_2(100%),Focal_AT(39%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Myb_DNA-bind_5(49%),SNARE(100%) 8 6 30 1096 226 ENST00000522684.5 ENST00000662555.1 upstream downstream duplicates(4),mismatches(2),multimappers(1) CAAG___CTTCAGCCCCAGGAAATCAGCCCCCCTCCTACTGCCAACCTGGACCGGTCGAATGATAAGGTGTACGAGAATGTGACGGGCCTGGTGAAAGCTGTCATCGAGATGTCCAGTAAAATCCAGCCAGCCCCACCAGAGGAGTATGTCCCTATGGTGAAG___GAAGTCGGCTTGGCCCTGAGGACATTATTGGCCACTGTGGATGAGACCATTCCCCTCCTACCAGCCAGCACCCACCGAGAG|AGTCCCCAGGCCCCGTTTGCCGAGCTGGCTGATGATGAGAAGGTCTTTAACGGGAGTGACAACATGTGGCAGGGCCAGGAGCAGGCGCTGCTCCCGGACATCACTGAAGAGGACCTGGAGGCCATCCGGCTGCGGGAGGAGGCCATCCTGCAGATGGAG___AGCAACTTGCTGGATGTGAATCAGATCATCAAGGACTTGGCCTCCATGGTGTCAGAGCAAGGAGAAGCTGTTG___GGTCCAGCAGCAG KLQPQEISPPPTANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHRE|SPQAPFAELADDEKVFNGSDNMWQGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVGSSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16517 C1orf56::SETDB1 ENSG00000143443.10::ENSG00000143379.13 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2882 FALSE NA C1orf56 ENSG00000143443.10 protein_coding + + chr1:151047751-151051986:+ chr1:151048852:+ chr1:151020227-151024462:+ chr1:151021328:+ SETDB1 ENSG00000143379.13 protein_coding + + chr1:150926263-150964744:+ chr1:150943920:+ chr1:150898739-150937220:+ chr1:150916396:+ chr1:151050507,chr1:151050506 chr1:150943335,chr1:150943331 NA NA chr1:151022983,chr1:151022982 chr1:150915811,chr1:150915807 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_missing_in_infertile_sperm_1__putative(99%)|Domain_of_unknown_function_(DUF5604)(1%),Histone_methyltransferase_Tudor_domain(100%),Histone_methyltransferase_Tudor_domain_1(48%),Methyl-CpG_binding_domain(100%),Pre-SET_motif(100%),SET_domain(100%) PMSI1(37%)|DUF5604(0%),MBD(100%),Pre-SET(100%),SET(100%),Tudor_4(100%),Tudor_5(4%) 1 2 11 42 250 ENST00000368926.6 ENST00000692314.1 downstream upstream none CCGCACGGAGCACAAGCCTTGCACCTATaAACAATGcCCCTGCAACCGACTTCGGGAAGAGgGCCCCCTGGACACAAGTCTCTGTACTGACACCAACTGTGCCTCTCAGAGCACCACCAGTACCAGGACCACCACTACCCCCTTCCCCACCATCCACCTCAGAAGCAGTCCCAGCCTGCCACCCGCCAGCCCCTGCCCAGCCCTGGCTTTTTGGAAACGGGTCAGGATTGGCCTGGAGGATATTTGGAATAGCCTCTCTTCAGTGTTCACAGAGATGCAACCA|GTTTCTCATTTTCTTTGATGATGGCTATGCTTCCTATGTCACACAGTCGGAACTGTATCCCATTTGCCGGCCAC___TGAAAAAGACTTGGGAGGACATAGAAGACATCTCCTGCCGTGACTTCATAGAGGAGTATGTCACTGCCTACCCCAACCGCCCCATGGTACTGCTCAAGAGTGGCCAGCTTATCAAGACTGAGTGGGAAGGCACGTGGTGGAAGTCCCGAGTTGAG RTEHKPCTYkQCPCNRLREEgPLDTSLCTDTNCASQSTTSTRTTTTPFPTIHLRSSPSLPPASPCPALAFWKRVRIGLEDIWNSLSSVFTEMQP|vshfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SET domain bifurcated 1 2 malignant mesothelioma epithelial oncogene frameshift, missense 16518 ATG10::ARSB ENSG00000152348.16::ENSG00000113273.17 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATG10 ENSG00000152348.16 protein_coding + + chr5:81972023-82276857:+ chr5:82058602:+ chr5:81267842-81572676:+ chr5:81354421:+ ARSB ENSG00000113273.17 protein_coding - + chr5:78777209-78986087:- chr5:78859497:+ chr5:78073032-78281910:- chr5:78155320:+ chr5:82089246,chr5:82089244 chr5:78842845,chr5:78842843 NA NA chr5:81385065,chr5:81385063 chr5:78138668,chr5:78138666 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Autophagocytosis_associated_protein__active-site_domain_(31%)| Autophagy_act_C(26%)| 4 3 18 82 9 ENST00000282185.8 unknown downstream upstream duplicates(3),mismappers(2) TTATCATTTAACATGGAAGAAGATGAGTTCATTGGAGAAAAAACATTCCAACGTTATTGTGCAGAATTCATTAAACATTCACAACAGATAGGTGATAGTTGGGAATGGAGACCATCAAAG___GACTGTTCTGATGGCTACATGTGCAAAATACACTTTCAAATTAAGAATGGGTCTGTGATGTCACATCTAGGAGCATCTACCCATGGACAGACATGTCTTCCCATGGAG|AATTACAAAAAGATGAAAACTGGCAACAGCGTTGGAAACTAAAGAGAAGACCATATGCCAAAGTCCCAAGGGGATTTTCACTAATGCCAATGCTGAAGAGACGAACAACACATTCTTGGATTCTGCCATAAGAATCAAAACATGATCCCAAAGAAAGTAGAAGAAGAT...AAACAAAAAAAAAAGAGTGATGATCTTCCATGAACTGTCCTTAGAGAGGCACCATTGTGCCTCCTCTCACCCCGAATGCTGGCTGCTTTCCTCTCTATGTC MEEDEFIGEKTFQRYCAEFIKHSQQIGDSWEWRPSKDCSDGYMCKIHFQIKNGSVMSHLGASTHGQTCLPME|nykkmktgnsvgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16519 OSBPL2::RIPOR3-AS1 ENSG00000130703.17::ENSG00000234693.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2883 TRUE 1103 OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62286711:+ chr20:60806978-60871269:+ chr20:60861767:+ RIPOR3-AS1 ENSG00000234693.1 lncRNA + + chr20:50645471-50662275:+ chr20:50652690:+ chr20:49262008-49278812:+ chr20:49269227:+ chr20:62287464,chr20:62287521,chr20:62287522 chr20:50652446,chr20:50652446,chr20:50652444 NA NA chr20:60862520,chr20:60862577,chr20:60862578 chr20:49268983,chr20:49268983,chr20:49268981 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Oxysterol-binding_protein_(76%)| Oxysterol_BP(76%)| 8 1 15 236 11 ENST00000439951.6 unknown downstream upstream duplicates(4) GGGAAGCTGTGGATAGAGCAGTATGGGACAGTGGAGATTTTAAACCACAG___AACTGGACATAAGTGTGTGCTTCACTTTAAACCGTGTGGATTATTTGGAAAA...GACACATTCAAGACAAAAA___CAAAAAGAAGCTCTTTATGATCTATGGCAAATGGACGGAATGTTTGTGGGGCATAGATCCTGTTTCGTATGAATCCTTCAAGAAGCAGGAGAGGAGAGGTGACCACCTGAGAAAGGCCAAGCTG___GATGAAGACTCCGGGAAGGCTGACAGCGACGTGGCTGACGACGTGCCTGTGGCCCAGGAGACCGTGCAGGTCATTCCTGGCAGCAAGCTGCTCTGGAGGATCAACACCCGGCCCCCCAACTtTGCCCAG|CCTTGACCGAAGTCCTGACGGCTGAGCATGCAGCTCAAATCCCTGGGGAGATACCACTGCACATACACGAGGGCGGTCGTCATCCAAAAGACAGACCACAGCAAGCGCTGGAGAGGATGTGGGGCAACTGAAACCCTG HIQDKNKKKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNfAQ|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16520 OSBPL2::RIPOR3-AS1 ENSG00000130703.17::ENSG00000234693.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2883 TRUE 1103 OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62286711:+ chr20:60806978-60871269:+ chr20:60861767:+ RIPOR3-AS1 ENSG00000234693.1 lncRNA + + chr20:50645471-50662275:+ chr20:50653946:+ chr20:49262008-49278812:+ chr20:49270483:+ chr20:62287464,chr20:62287521,chr20:62287522 chr20:50652446,chr20:50652446,chr20:50652444 NA NA chr20:60862520,chr20:60862577,chr20:60862578 chr20:49268983,chr20:49268983,chr20:49268981 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Oxysterol-binding_protein_(76%)| Oxysterol_BP(76%)| 0 4 9 236 42 ENST00000439951.6 ENST00000435177.1 downstream upstream duplicates(1) TTCGTATGAATCCTTCAAGAAGCAGGAGAGGAGAGGTGACCACCTGAGAAAGGCCAAGCTG___GATGAAGACTCCGGGAAGGCTGACAGCGACGTGGCTGACGACGTGCCTGTGGCCCAGGAGACCGTGCAGGTCATTCCTGGCAGCAAGCTGCTCTGGAGGATCAACACCCGGCCCCCCAACTtTGCCCAG|GTTGTGACTTCAATATACCCTCTCATGAGACCTTTCCTGGCCCCTTATCT___GTGGAGGAGGCACGTGACCCACATGGTCTGGCCACTGATGACTGAACAAGCTATGGACACCGGACCCCGGAG...___GAAACTGAAAATTCACACAGCAGCCGTGGGAGTCAGAGTAGCAAAGGCTTTGAGATCACATAGACCTGGGACACGTGCTTGCTTTGTGATTACGGG SYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNfAQ|vvtsiyplmrpflapylwrrhvthmvwplmteqamdtgpr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16521 OSBPL2::RIPOR3-AS1 ENSG00000130703.17::ENSG00000234693.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2883 TRUE 1103 OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62286711:+ chr20:60806978-60871269:+ chr20:60861767:+ RIPOR3-AS1 ENSG00000234693.1 lncRNA + + chr20:50645471-50662275:+ chr20:50659866:+ chr20:49262008-49278812:+ chr20:49276403:+ chr20:62287464,chr20:62287521,chr20:62287522 chr20:50652446,chr20:50652446,chr20:50652444 NA NA chr20:60862520,chr20:60862577,chr20:60862578 chr20:49268983,chr20:49268983,chr20:49268981 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Oxysterol-binding_protein_(76%)| Oxysterol_BP(76%)| 2 1 6 236 37 ENST00000439951.6 ENST00000452336.1 downstream upstream duplicates(1) CCCACCTGCTGCGTCCACAACGTCATCATCGGGAAGCTGTGGATAGAGCAGTATGGGACAGTGGAGATTTTAAACCACAG___AACTGGACATAAGTGTGTGCT...ATTCAAGACAAAAA___CAAAAAGAAGCTCTTTATGATCTATGGCAAATGGACGGAATGTTTGTGGGGCATAGATCCTGTTTCGTATGAATCCTTCAAGAAGCAGGAGAGGAGAGGTGACCACCTGAGAAAGGCCAAGCTG___GATGAAGACTCCGGGAAGGCTGACAGCGACGTGGCTGACGACGTGCCTGTGGCCCAGGAGACCGTGCAGGTCATTCCTGGCAGCAAGCTGCTCTGGAGGATCAACACCCGGCCCCCCAACTtTGCCCAG|GTGGAGGAGGCACGTGACCCACATGGTCTGGCCACTGATGACTGAACAAGCTATGGACACCGGACCCCGGAGAGACCATTCACTCACTGGCCACGAACATGAGTTCAGATACATGCCCCAAAAGGATGAGCCTGGGTACTGGATTCCCTCCCTCAGAAACGTGAATCAAGAGACACAGGATGTTCCTGTTGGTCCAGATACTTGAGCTAAAAG___GAAACTGAAAATTCACACAGCAGCCGTGGGAGTCAGAGTAGCAAAG IQDKNKKKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNfAQ|veeardphglatdd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16522 AFG1L::ENSG00000286511 ENSG00000135537.17::ENSG00000286511.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AFG1L ENSG00000135537.17 protein_coding + + chr6:108294991-108526796:+ chr6:108324048:+ chr6:108616195-108847999:+ chr6:108645252:+ ENSG00000286511 ENSG00000286511.1 lncRNA + + chr6:108798929-108837113:+ chr6:108835229:+ chr6:109120132-109158316:+ chr6:109156432:+ chr6:108325439,chr6:108325503,chr6:108325500 chr6:108805644,chr6:108805644,chr6:108805638 NA NA chr6:108646643,chr6:108646707,chr6:108646704 chr6:109126847,chr6:109126847,chr6:109126841 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none AFG1-like_ATPase(12%)| AFG1_ATPase(0%)| 5 7 9 39 22 ENST00000368977.9 ENST00000655744.1 downstream upstream duplicates(2),inconsistently_clipped(1),low_entropy(1),mismatches(1) TTGGAAAG___CCTATACGGTTCAGACATCCGAGAGCATGACCCCAACTGCCACTTCAGAGACTTATTTGAAAGCTTTGGCCGTTTGCCATGGACCTCTGGACCACTATGATTTTCTGATCAAAGCTCATGAGCTAAAGGATGATGAACATCAAAGAAGAGTCATACAGTGTTTGCAGAAATTACACGAGGACCTTAAAGGATACAATATAGAGGCAGAAGGCCTTTTTTCAAAG|GCCGTGCCATCCCCGGGGAGGACAAGAAAAAAGTAACAAAAATAATTTTTGGCTTCAAGCACCCAACAATGGAAATGCTGAAACCCATGTCCTTTAAGTCCTTTTCTTCTCCTAGCAGAGGGCCCTCTGCCTACATGGGGCACCGTGGTGGCCATTTAATGTACTCCTGCTTGGTACCCACCTCTGCTCTGCCCCCTGGTGGCCACAGACACCATTGCTGCTGCCTCAGCACAGTTTGACCTTGTTGCTGCCAAGAGCCACCTCTCCTCTCA WKAYTVQTSESMTPTATSETYLKALAVCHGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYNIEAEGLFSK|avpspgrtrkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16523 CREBBP::ADCY9 ENSG00000005339.15::ENSG00000162104.10 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1601 TRUE 2884 TRUE 1104 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:4007558:- chr16:4003388-4166443:- chr16:4057559:- chr16:3807655,chr16:3807660 chr16:4014801,chr16:4014780 NA NA chr16:3857656,chr16:3857661 chr16:4064802,chr16:4064781 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(52%) |Guanylate_cyc(0%),zf-C2HC_2(100%) 5 2 14 293 70 ENST00000262367.10 ENST00000294016.8 upstream downstream duplicates(3),mismatches(1),multimappers(1) CCAAACTCAGCTCGCCCGGTTTCTCGGCGAATGACAGCACAG___...CAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG___ATGGGAATAACTGGGAACACAAGTCCATTTGGACAGCCCTTTAGTCAAGCTGGAGGGCAGCCAATGGGAGCCACTGGAGTGAACCCCCAGTTAGCCAGCAAACAGAGCATGGTCAACAGTTTGCCCACCTTCCCTACAGATATCAAGAATACTTCAGTCACCAACGTGCCAAATATG|GTTTGAAGACATACCTGATATCGGGTCAGAGAGCCAAGGAGTCTCGCTGCAGCTGTGCAGAGGCCTTGCTTTCTGGCTTTGAGGTCATTGACGGCTCACAGGTGTCCTCAGGCCCTAGGGGACAGGGGACAGCGTCATCAGGGAATGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAG___ACCTGCCCTTCGTGCGGAATCACATTTGCTCCCAAATCTGAAGCCGGCGCCGAGGGAGGAGCACCTCAAAACGGCTGCCAAGACGAG QVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNM|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Oesophagus no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 3929833 FALSE 4016967 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 16524 CREBBP::ADCY9 ENSG00000005339.15::ENSG00000162104.10 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2884 TRUE 1104 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:3993510:- chr16:4003388-4166443:- chr16:4043511:- chr16:3807655,chr16:3807660 chr16:4014801,chr16:4014780 NA NA chr16:3857656,chr16:3857661 chr16:4064802,chr16:4064781 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(50%) |Guanylate_cyc(0%),zf-C2HC_2(0%) 1 1 4 293 143 ENST00000262367.10 ENST00000294016.8 upstream downstream duplicates(1) TGAGACCCTAACGCAGGTTTCCCCGCAAATGACTGGTCACGCGGGACTGAACACCGCACAGGCAGGAGGCATGGCCAAG___ATGGGAATAACTGGGAACACAAGTCCATTTGGACAGCCCTTTAGTCAAGCTGGAGGGCAGCCAATGGGAGCCACTGGAGTGAACCCCCAGTTAGCCAGCAAACAGAGCATGGTCAACAGTTTGCCCACCTTCCCTACAGATATCAAGAATACTTCAGTCACCAACGTGCCAAATATG|ACCTGCCCTTCGTGCGGAATCACATTTGCTCCCAAATCTGAAGCCGGCGCCGAGGGAGGAGCACCTCAAAACGGCTGCCAAGACGAGCATAAAAACAGCACCAAG___GCTTCTGGAGGACCTAATCCCAAAACTCAGAACGGGCTCCTCAGCCCTCCCCAAGAGGAGAAGCTCACCAACAGTCAGACTTCTCTGTGTGAG ETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNM|TCPSCGITFAPKSEAGAEGGAPQNGCQDEHKNSTKASGGPNPKTQNGLLSPPQEEKLTNSQTSLC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Oesophagus no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 3929833 FALSE 4016967 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 16525 PTCD3::POLR1A ENSG00000132300.19::ENSG00000068654.17 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTCD3 ENSG00000132300.19 protein_coding + + chr2:86106223-86142157:+ chr2:86106351:+ chr2:86333346-86369280:+ chr2:86333474:+ POLR1A ENSG00000068654.17 protein_coding - + chr2:86020216-86106155:- chr2:86065292:+ chr2:86247339-86333278:- chr2:86292415:+ chr2:86108427,chr2:86108424 chr2:86063189,chr2:86063183 NA NA chr2:86335550,chr2:86335547 chr2:86290312,chr2:86290306 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none none none 2 9 7 297 262 ENST00000254630.12 unknown downstream upstream duplicates(2),mismatches(6) TCAAAGATGGCGGTTGTATCTGCTGTTCGCTGGCTGGGCCTCCGCAGCAGGCTTGGCCAGCCGCTGACGGGTCGGCGGGCGGG?TTGTGTGAACAGGCACGCAGCTGCAG|CGGAAAGGGCTTCAGGATGGAAGGAGAAAGGAGCTTCACGCGCCCCACTTTGTCCGTGAGTCCTCGGTACACCAGCTCCATATAGTGCTCCCGGGTGAAAAAGCAACCCCGAGTAGTCATGCTTGCCCCTGAAACCATGTGATCCTGGATCAGTCCCGCCAATGGTTGGCCATCCTATAAGCCAAAACAGACAACACAAGAAGAA MAVVSAVRWLGLRSRLGQPLTGRRAGLCEQARSCs|gkgfrmegersftrptlsvsprytssi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16526 WNK2::CARD19 ENSG00000165238.17::ENSG00000165233.18 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WNK2 ENSG00000165238.17 protein_coding + + chr9:93184122-93320572:+ chr9:93268746:+ chr9:95946404-96082854:+ chr9:96031028:+ CARD19 ENSG00000165233.18 protein_coding + + chr9:93096217-93113283:+ chr9:93107674:+ chr9:95858499-95875565:+ chr9:95869956:+ chr9:93283851,chr9:93283849 chr9:93100627,chr9:93100622 NA NA chr9:96046133,chr9:96046131 chr9:95862909,chr9:95862904 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)| OSR1_C(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 6 4 7 237 162 ENST00000427277.7 ENST00000490488.5 downstream upstream duplicates(2),mismatches(1) CCAGCCCGCCACACCTCAGCACCTGCGGCCTGGGCACCGGGGAG___GAGAGCCGACAATCCCAAGCCAACGCCCCCGTGTATCAGCAGAACG___TCCTGCACACCGGGAAGAGGTGGTTCATCATCTGTCCGGTGGCTGAGCACCCCGCCCCCGAGGCCCCTGAATCTTCGCCCCCACTTCCTCTAAGCTCCCTGCCGCCAGAAGCCAGCCAAG|ATCAGACCTATTGTGACCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGCGCTTGAGTGAGCAGCAGGTGGACAGGATCATCCTCCAGCTGAACCGTTACTACCCACAGATCCTTACCAACAAGGAGGCGGAAAAGGTGCTGAGGAG___TTCCGGAACCCCAAGGCATCCTTGCGTGTGCGGCTCTGTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGAC SPPHLSTCGLGTGEESRQSQANAPVYQQNVLHTGKRWFIICPVAEHPAPEAPESSPPLPLSSLPPEASQ|dqtycdrlvqdtpfltghgrlseqqvdriilqlnryypqiltnkeaekvlrssgtprhpcvcgsvts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK2 Other WNK Q9Y3S1 FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE WNK lysine deficient protein kinase 2 2 gastric cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 16528 ARID1B::TPRG1 ENSG00000049618.25::ENSG00000188001.10 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1602 FALSE NA FALSE NA ARID1B ENSG00000049618.25 protein_coding + + chr6:156776020-157210779:+ chr6:156779471:+ chr6:157097154-157531913:+ chr6:157100605:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189310386:+ chr3:188665003-189043093:+ chr3:189028175:+ chr6:156808359,chr6:156808358,chr6:156808292,chr6:156808359,chr6:156808356 chr3:189271180,chr3:189271176,chr3:189271056,chr3:189271174,chr3:189271174 NA NA chr6:157129493,chr6:157129492,chr6:157129426,chr6:157129493,chr6:157129490 chr3:188988969,chr3:188988965,chr3:188988845,chr3:188988963,chr3:188988963 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Inositol_phosphatase_(10%) |hSac2(0%) 2 8 6 77 32 ENST00000346085.10 ENST00000433971.5 downstream upstream duplicates(1) CTTGGGCAAGGACATGGGCGCCCAGTACGCCGCTGCCAGCCCGGCCTGGGCGGCCGCGCAACAAAGGAGTCACCCGGCGATGAGCCCCGGCACCCCCGGACCGACCATGGGCAGATCCCAG|GAGACAAGGAGAAGGCCTTAGGATCTACTGGGGGAGTCCGGAGGAGCAGTCTCTTCTGTCCCGCTGGAACCCATGGTCCACTGAAGTTCCTTATGCTACTTTCACTGAGCATCCTATGAAATACACCAGTGAGAAATTCCTTGAAATTTGCAAG___TTGTCTGGGTTCATGTCTAAGCTTGTTCCAGCTATCCAGAATGCCCACAAGAATTCAACTGGATCTGGAAGAGGAAAGAAACTGATGGTGTTAACTGAACCCATTTTGATTGAGA LGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQ|etrrrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1B 1 Yes breast, hepatocellular carcinoma, clear cell ovarian carcinoma epithelial TSG missense, frameshift, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 16529 OSBPL2::RIPOR3 ENSG00000130703.17::ENSG00000042062.13 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62286711:+ chr20:60806978-60871269:+ chr20:60861767:+ RIPOR3 ENSG00000042062.13 protein_coding - + chr20:50586108-50691542:- chr20:50652690:+ chr20:49202645-49308079:- chr20:49269227:+ chr20:62287464,chr20:62287521,chr20:62287522 chr20:50652446,chr20:50652446,chr20:50652444 NA NA chr20:60862520,chr20:60862577,chr20:60862578 chr20:49268983,chr20:49268983,chr20:49268981 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Oxysterol-binding_protein_(76%)| Oxysterol_BP(76%)| 8 1 6 236 11 ENST00000439951.6 unknown downstream upstream duplicates(3) GGGAAGCTGTGGATAGAGCAGTATGGGACAGTGGAGATTTTAAACCACAG___AACTGGACATAAGTGTGTGCTTCACTTTAAACCGTGTGGATTATTTGGAAAA...GACACATTCAAGACAAAAA___CAAAAAGAAGCTCTTTATGATCTATGGCAAATGGACGGAATGTTTGTGGGGCATAGATCCTGTTTCGTATGAATCCTTCAAGAAGCAGGAGAGGAGAGGTGACCACCTGAGAAAGGCCAAGCTG___GATGAAGACTCCGGGAAGGCTGACAGCGACGTGGCTGACGACGTGCCTGTGGCCCAGGAGACCGTGCAGGTCATTCCTGGCAGCAAGCTGCTCTGGAGGATCAACACCCGGCCCCCCAACTtTGCCCAG|CCTTGACCGAAGTCCTGACGGCTGAGCATGCAGCTCAAATCCCTGGGGAGATACCACTGCACATACACGAGGGCGGTCGTCATCCAAAAGACAGACCACAGCAAGCGCTGGAGAGGATGTGGGGCAACTGAAACCCTG HIQDKNKKKLFMIYGKWTECLWGIDPVSYESFKKQERRGDHLRKAKLDEDSGKADSDVADDVPVAQETVQVIPGSKLLWRINTRPPNfAQ|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16530 SRC::MROH8 ENSG00000197122.13::ENSG00000101353.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRC ENSG00000197122.13 protein_coding + + chr20:37344685-37406050:+ chr20:37347236:+ chr20:35973088-36034453:+ chr20:35975639:+ MROH8 ENSG00000101353.16 protein_coding - + chr20:37101226-37179588:- chr20:37113935:+ chr20:35729629-35807991:- chr20:35742338:+ chr20:37349314,chr20:37349314 chr20:37106739,chr20:37106736 NA NA chr20:35977717,chr20:35977717 chr20:35735142,chr20:35735139 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 6 3 4 35 38 ENST00000692112.1 unknown downstream upstream duplicates(1),mismatches(4) CCCGCGGTCCGCCCTCCCGTGCGTCCGTCTGCCGGTGAGCCCGCCCGCCCGCCGGCCCAG___CCCCTGCGTCCTTCAGGTGGACTTAGGAGTGGACAGAGCCTGTGTGTGCCCCTGGGCAAGACCTCCTGAACTTCATGGACTCTGTACAATTTGGGGCAGTGGTTGCTGGGTCACCTGGG|AGTTGGCTCTGGATTTGAAGTTTGAGGGATGAGAGACACCGACAGTAGGCCTTACCTCAGCTACTGCATCATTTTCATCCTGAGAATACAGAAGTAGTGGGACCAAGCTGTCCAGGACTTGGTTCTCTATACTCTTCTTATCTGGGTTTTTTACAGACTTTATGGCGGCTCCAAAGAGAGTCACGGAGAAACGATGAACATCAGATCTCACCTGGGAAGGGAGTAGCCAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Proto-oncogene tyrosine-protein kinase Src TK Src P12931 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SRC proto-oncogene, non-receptor tyrosine kinase 1 Yes colorectal cancer, endometrial carcinoma epithelial oncogene missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 16536 CACNB2::SLC39A12 ENSG00000165995.24::ENSG00000148482.12 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNB2 ENSG00000165995.24 protein_coding + + chr10:18140424-18543557:+ chr10:18291757:+ chr10:18429353-18832486:+ chr10:18580686:+ SLC39A12 ENSG00000148482.12 protein_coding + + chr10:17951839-18043292:+ chr10:18042705:+ chr10:18240768-18332221:+ chr10:18331634:+ chr10:18344932 chr10:18040270 NA NA chr10:18633861 chr10:18329199 NA NA sense sense unknown intron CDS/splice-site duplication high none |ZIP_Zinc_transporter(10%) |Zip(0%) 6 1 2 26 7 unknown ENST00000539911.5 downstream upstream none CCCACATGCTCCTTGCTCTCATTATTTTTCTTATTAGTAATTGTAAGTGGTAGCTACCAAGCTTCTTATTAAAGCTTGGAGAGTAATTGGGAATTGCAATTGAACAGCCGAGAGAGGAACACCTCTGTGATTTTGGACGTTTCCACGTGGACTGAAGTTTTAATTTTTTCAAGGGACTACTCCACTTCGGATGTTGTGGCTATACAGAAGATAACATGTTGCAGATTCTGCCTCCATAGTGATCAGAGTAGCAATCTGTGATGTGTGTGTTCACGTGCTTAATGCCCAGAAGGAAGATGGGCTATGGGAAGGTTACTTTCGCTGTTACTTATGATATCTGTGTCTGGCAAACCAGAGAACTTTTTGCATTTGGGTAACAAAGACGTTTGGAAATATACTCCATTGGATTTTCCATGTTGGTGAAACTATTGTTGACCGCTTCAGTACTGTATGTTGCCATGCCAAAATCACCTAAGGGCAAAAATGTCTCCTGG|CTTCCTGAAATGACTCATGTTCAAACACAACGACCCTGGATGATGTTTCTCCTGCAAAACTTTGGATTGATCCTAGGTTGGCTTTCTCTCCTGCTCTTGGCTATATATGAG...AACATCTTTCAAAAATGCATTTATATAGTCTTACTTTGTTTCTTTCATTGCACTCTATAATGATTTTTAAATTAAGAATTTTTTATCTTAGGCAAAGTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16548 SMPD3::TANGO6 ENSG00000103056.12::ENSG00000103047.8 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMPD3 ENSG00000103056.12 protein_coding - - chr16:68358327-68448508:- chr16:68448353:- chr16:68392230-68482411:- chr16:68482256:- TANGO6 ENSG00000103047.8 protein_coding + - chr16:68843531-69085182:+ chr16:69002243:- chr16:68877434-69119085:+ chr16:69036146:- chr16:68392850,chr16:68392856 chr16:69028554,chr16:69028557 NA NA chr16:68426753,chr16:68426759 chr16:69062457,chr16:69062460 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none none 0 22 0 64 60 ENST00000219334.10 unknown upstream downstream duplicates(2),mismatches(2) CCGGGAGCCCGGGCTGTGAGGAGCCGGGAGGAGCGGGGTGCGCTGCCGGGCGCTGACCGCCCTCCCGCCCGCCGTCAGAG|TCAACTGAATTATTTCTCCTGTCCGTTTTCTTGCTACCCTTGATGCTCACATGAGAGGACCTATGGTAATTTCTGACAGCCTGGGACTCCTTGGGAGAAAAATAGAAGATGTCACAGATCCTGTTTTGGAAGAAAAAGCTGTTTTCCTCATGGAACTCCAAGAATT___ACTGATCCTGCTTACTCCTGTGAACCAACCAGTGATCTCTGGCTGCTGCTCAGAAGAAACAATAGGGATGG___GTGTGAACTTGTATCCCAGGCTGGCCAGTTAGGATCTTCCATTCCATCCCCACCACCATGACTGGTTCAGGAACAGGGAATGAGATTCGATCCTGAAACCCACATTGACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16558 NFIX::ENSG00000267424 ENSG00000008441.19::ENSG00000267424.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFIX ENSG00000008441.19 protein_coding + + chr19:12995475-13098796:+ chr19:13025552:+ chr19:13106289-13209610:+ chr19:13136366:+ ENSG00000267424 ENSG00000267424.1 lncRNA + + chr19:12825711-12832983:+ chr19:12832555:+ chr19:12936525-12943797:+ chr19:12943369:+ chr19:13065595 chr19:12827875 NA NA chr19:13176409 chr19:12938689 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none MH1_domain(100%),Nuclear_factor_I_protein_pre-N-terminus(100%)| MH1(100%),NfI_DNAbd_pre-N(100%)| 2 1 3 753 16 ENST00000592199.6 ENST00000588469.1 downstream upstream mismatches(1) GCCCGAGTTCCGCGAGGACTTCGTGCTGACCATCACGGGCAAGAAGCCCCCCTGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATCCGGCGGATTGACTGCCTGCGCCAGGCTGACAAGGTGTGGCGGCTGGACCTGGTCATGGTGATTTTGTTTAAGGGGATCCCCCTGGAAAGTACTGATGGGGAGCGGCTCTACAAGTCGCCTCAGTGCTCGAACCCCGGCCTGTGCGTCCAGCCACATCACATTGGAGTCACAATCAAAGAACTGGATCTTTATCTGGCTTACTTTGTCCACACTCCGG|CACCGCGGACAGGAGCGCGCGAGACCAGCACCAAGGAGAGCTCCCGCGGTCGCCATCGTGAGATAGGTCGCCAGGGGCGGAGTCCGGGCCATGGACGGAGAGATGTGCCAGCAAGGGACTCAGCGAGACGGCGACACAAATGTGCCGACAAACATATACAGAGACAGACAGAGATAACCCAGGCAAAGGCG PEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTP|aprtgaretstkessrgrhreigrqgrspghgrrdvpardsarrrhkcadkhiqrqteitqak NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16569 ANKRD7::FOXP2 ENSG00000106013.15::ENSG00000128573.28 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2892 TRUE 1105 ANKRD7 ENSG00000106013.15 protein_coding + + chr7:118214669-118496171:+ chr7:118322996:+ chr7:117854723-118136225:+ chr7:117963050:+ FOXP2 ENSG00000128573.28 protein_coding + + chr7:114086327-114693772:+ chr7:114628540:+ chr7:113726382-114333827:+ chr7:114268595:+ chr7:118390681,chr7:118390919,chr7:118390675,chr7:118390699,chr7:118390698 chr7:114545073,chr7:114545102,chr7:114545073,chr7:114545071,chr7:114545071 NA NA chr7:118030735,chr7:118030973,chr7:118030729,chr7:118030753,chr7:118030752 chr7:114185128,chr7:114185157,chr7:114185128,chr7:114185126,chr7:114185126 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)|FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|FOXP-CC(100%),Forkhead(100%) 0 2 0 3 4 ENST00000433239.6 ENST00000703614.1 downstream upstream duplicates(1) TAACCTTCTAGGTTAAATCAATCCTCCCACCTCAGCATCCCAAGTAGCTGGGACTACAGGTGTGCGCCACGACATCTGG|GTGCCTGTGTCAGTGGCCATGATGACTCCCCAG...CTTCTCCAACAACAGCAGGCTGTCATGCTGCAGCAG___CAACAACTACAAGAGTTTTACAAGAAACAGCAAGAGCAGTTACATCTTCAGCTTTTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3666 chr7:114653345-114653455:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16570 ANKRD7::FOXP2 ENSG00000106013.15::ENSG00000128573.28 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 2892 TRUE 1105 ANKRD7 ENSG00000106013.15 protein_coding + + chr7:118214669-118496171:+ chr7:118259889:+ chr7:117854723-118136225:+ chr7:117899943:+ FOXP2 ENSG00000128573.28 protein_coding + + chr7:114086327-114693772:+ chr7:114570807:+ chr7:113726382-114333827:+ chr7:114210862:+ chr7:118390681,chr7:118390919,chr7:118390675,chr7:118390699,chr7:118390698 chr7:114545073,chr7:114545102,chr7:114545073,chr7:114545071,chr7:114545071 NA NA chr7:118030735,chr7:118030973,chr7:118030729,chr7:118030753,chr7:118030752 chr7:114185128,chr7:114185157,chr7:114185128,chr7:114185126,chr7:114185126 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)|FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|FOXP-CC(100%),Forkhead(100%) 1 0 0 5 0 ENST00000477532.5 ENST00000703616.1 downstream upstream none CGAAGGTATTGTGGATTCACAGCTGAGGAATATGTTTATTTCCATGGTTTTACTGC___ATAGATACCCACAATTCACTGCGAGCCATGGAAAGAAGAAACATG...GTTTGGAGCTTATTCTTGGGGACTATTCTAAGCCTGAGGAACCAACAACCCAAG|GAATTGCTTCCAGAAACAAAATTATGTATCTGTGGCCACTCTTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3666 chr7:114653345-114653455:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16613 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1605 TRUE 2900 TRUE 1106 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59811670:+ chr17:57784553-57919616:+ chr17:57889031:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)|SNARE_associated_Golgi_protein(32%) Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 136 121 134 2098 1380 ENST00000269122.8 ENST00000262291.9 downstream upstream duplicates(87),mismappers(3),mismatches(11) AGAGCTGTGCAAGAAAGACAGCCTTTACAAG___GATGCAATGCAGTATGCTTCTGAATCTAAAGATACTGAATTGGCTGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG|ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCATC ELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK|IPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16614 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2900 TRUE 1106 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59687021:+ chr17:57697045-57774317:+ chr17:57764382:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59811670:+ chr17:57784553-57919616:+ chr17:57889031:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)|SNARE_associated_Golgi_protein(32%) Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 1 1 135 140 1380 ENST00000472651.6 ENST00000262291.9 downstream upstream duplicates(19),mismappers(1),mismatches(5) CTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG___GTTGATGCAATAAAGGAAAAG|ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAG___AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAG CLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEK|IPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16615 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2900 TRUE 1106 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)| Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 0 1 46 2098 1212 ENST00000269122.8 ENST00000262291.9 downstream upstream duplicates(4),mismatches(3) CTGGAAACAGAGTGTAGAGCTGTGCAAGAAAGACAGCCTTTACAAG___GATGCAATGCAGTATGCTTCTGAATCTAAAGATACTGAATTGGCTGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG|AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGG WKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK|KIFVIITFSKHIVEQMVAFIGAVPGIGPSLQKPFQEYLEAQRQKLHHKSEM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16616 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2900 TRUE 1106 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)| Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 1 0 30 2098 1892 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(1),mismatches(3) TCTCTTCAAAGGCAACAATCGCTGGAAACAGAGTGTAGAGCTGTGCAAGAAAGACAGCCTTTACAAG___GATGCAATGCAGTATGCTTCTGAATCTAAAGATACTGAATTGGCTGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCA LFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16617 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2900 TRUE 1106 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59656027:+ chr17:57697045-57774317:+ chr17:57733388:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin_propeller_repeat(96%)| Clathrin_propel(62%)| 0 0 0 1440 1212 ENST00000269122.8 ENST00000262291.9 downstream upstream duplicates(1),low_entropy(1) GATGTGGTGTTCTTGATAACCAAGTATGGTTATATCCACCTCTATGATCTTGAGACTGGTACCTGCATCTACATGAATAGAATCAGTGGAGAAACAATTTT...TAAACAGAAAGGGACAA|AAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGG___TGCTGTCCCCGGCATAGGTCCA NRKGQ|KIFVIITFSKHIVEQMVAFIGAVPGIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16618 LNPEP::CAST ENSG00000113441.16::ENSG00000153113.24 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2901 TRUE 1107 LNPEP ENSG00000113441.16 protein_coding + + chr5:96935394-97037513:+ chr5:96936174:+ chr5:96271098-96373217:+ chr5:96271878:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96762274:+ chr5:95860971-96115299:+ chr5:96097978:+ chr5:96955387 chr5:96758472 NA NA chr5:96291091 chr5:96094176 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |Calpain_inhibitor(19%) |Calpain_inhib(8%) 21 198 38 156 1275 ENST00000395784.1 ENST00000395812.6 downstream upstream duplicates(50),mismatches(5) CTGGGCATGCTCAGTCAGCTGGGCCGCCTCAGCTCTCGGAGTAGGAAGCTCGGGCGCTCCGGCTGTAAGGAGCCGCGGCGGGGGGAAAATGGAGCCCTTCACCAATG|AAATTTGAAGATGCTAAACTTGCTGCTGCCATCTCTGAAGTGGTTTCCCAAACCCCAGCTTCAACGACCCAAGCTGGAGCCCCACCCCGTGATACCTCG___CAGAGTGACAAAGACCTCGATGATGCCTTGGATAAACTCTCTGACAGTCTAGGACAAAGGCAGCCTGACCCAGATGAGAACAAACCAATGGAAGATAAAGTAAAG___GAAAAAGCTAAAGCTGAACATAGAGACAAGCTTGGAGAAAGAGATGACACTATCCCACCTGAATACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96271878 TRUE 96011243 FALSE PARTIALLY CDS-5UTR TRUE Breast BREAST no_match 96936174 TRUE 96675539 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16619 LNPEP::CAST ENSG00000113441.16::ENSG00000153113.24 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2901 TRUE 1107 LNPEP ENSG00000113441.16 protein_coding + + chr5:96935394-97037513:+ chr5:96936174:+ chr5:96271098-96373217:+ chr5:96271878:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96765221:+ chr5:95860971-96115299:+ chr5:96100925:+ chr5:96955387 chr5:96758472 NA NA chr5:96291091 chr5:96094176 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |Calpain_inhibitor(13%) |Calpain_inhib(3%) 2 12 18 156 1529 ENST00000395784.1 ENST00000395812.6 downstream upstream duplicates(6),mismatches(1) TGCAGCTGCCACGAAAACCCGGAACGGCGGAGCGGCGCCGCCCCTCGCGGCACCTCCCTGGCAGCCCTTGGAGGCCGCGCTGGGCATGCTCAGTCAGCTGGGCCGCCTCAGCTCTCGGAGTAGGAAGCTCGGGCGCTCCGGCTGTAAGGAGCCGCGGCGGGGGGAAAATGGAGCCCTTCACCAATG|CAGAGTGACAAAGACCTCGATGATGCCTTGGATAAACTCTCTGACAGTCTAGGACAAAGGCAGCCTGACCCAGATGAGAACAAACCAATGGAAGATAAAGTAAAG___GAAAAAGCTAAAGCTGAACATAGAGACAAGCTTGGAGAAAGAGATGACACTATCCCACCTGAATACAGACATCTCCTGGATGATAATGGACAG___GACAAACCAGTGAAGCCACCTACAAAGAAATCAGAGGATTCAAAG___AAACCTGCAGATGACCAAGACCCCATTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96271878 TRUE 96011243 FALSE PARTIALLY CDS-5UTR TRUE Breast BREAST no_match 96936174 TRUE 96675539 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16620 LNPEP::CAST ENSG00000113441.16::ENSG00000153113.24 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2901 TRUE 1107 LNPEP ENSG00000113441.16 protein_coding + + chr5:96935394-97037513:+ chr5:96936174:+ chr5:96271098-96373217:+ chr5:96271878:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96765224:+ chr5:95860971-96115299:+ chr5:96100928:+ chr5:96955387 chr5:96758472 NA NA chr5:96291091 chr5:96094176 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none |Calpain_inhibitor(13%) |Calpain_inhib(3%) 0 2 18 156 1529 ENST00000395784.1 ENST00000674702.1 downstream upstream duplicates(3),mismatches(1) CCTCGCTCTTTCTGCAGCTGCCACGAAAACCCGGAACGGCGGAGCGGCGCCGCCCCTCGCGGCACCTCCCTGGCAGCCCTTGGAGGCCGCGCTGGGCATGCTCAGTCAGCTGGGCCGCCTCAGCTCTCGGAGTAGGAAGCTCGGGCGCTCCGGCTGTAAGGAGCCGCGGCGGGGGGAAAATGGAGCCCTTCACCAATG|AGTGACAAAGACCTCGATGATGCCTTGGATAAACTCTCTGACAGTCTAGGACAAAGGCAGCCTGACCCAGATGAGAACAAACCAATGGAAGATAAAGTAAAG___GAAAAAGCTAAAGCTGAACATAGAGACAAGCTTGGAGAAAGAGATGACACTATCCCACCTGAATACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96271878 TRUE 96011243 FALSE PARTIALLY CDS-5UTR TRUE Breast BREAST no_match 96936174 TRUE 96675539 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16621 IPO7::MYH9 ENSG00000205339.10::ENSG00000100345.23 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1606 FALSE NA FALSE NA IPO7 ENSG00000205339.10 protein_coding + + chr11:9384652-9448127:+ chr11:9440661:+ chr11:9406199-9469674:+ chr11:9462208:+ MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36297014:- chr22:36677326-36784055:- chr22:36693060:- chr11:9441681 chr22:36297267 NA NA chr11:9463228 chr22:36693313 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Cse1(100%),Importin-beta_N-terminal_domain(100%)|Myosin_tail(82%) Cse1(100%),IBN_N(100%)|Myosin_tail_1(73%) 64 36 89 1333 1938 ENST00000379719.8 ENST00000685801.1 downstream downstream duplicates(49),low_entropy(2),mismatches(23) ATGATGATGAAGCTGAAGATGATGATGAAACCG___AGGAACTGGGGAGTGATGAAGATGATATTGATGAAGATGGGCAAGAATATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATGGAGATGATGAAGATTGGGAAGAAGATGATGCTGAAGAGACTGCTCTGGAAGGCTATTCCACAATCATTGATGATGAAGATAACCCTGTTGATGAGTATCAGATATTTAAAGCTATCTTTCAAA|AGCGCCTCCGCAGGGAGGAGAAGCAGCGACAGGAGCTGGAGAAGACCCGCCGGAAGCTGGAGGGAGACTCCACAGACCTCAGCGACCAGATCGCCGAGCTCCAGGCCCAGATCGCGGAGCTCAAGATGCAGCTGGCCAAGAAAGAGGAGGAGCTCCAGGCCGCCCTGGCCAG___AGTGGAAGAGGAAGCTGCCCAGAAGAACATGGCCCTCAAGAAGATCCGGGAGCTGGAATCTCAGATCTCTGAACTCCAGGAAGACCTGGAGTCTGA DDEAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDEDWEEDDAEETALEGYSTIIDDEDNPVDEYQIFKAIFQ|kRLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6819 chr22:36286847-36286907:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation 16622 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1607 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44359579:- chr17:42430583-42441221:- chr17:42436947:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Uncharacterised_protein_family_UPF0560(13%)| UPF0560(8%)| 40 29 44 214 138 ENST00000293443.12 ENST00000572316.5 upstream upstream duplicates(25),mismatches(5) CGGACTCTGCTGGCAGCTGGCACCACAGACTCAGAGGGTGTGGCCACCCTGCCCCTCAGTTATCGCTTGGGCACCTGGGTGCTGGTCACTGCTGCCCGCCCTGGCTTCCTCACCAACTCTGTGCCCTGGCGTGTTGACAAGCTGCCCT___TGTATGCGTCTGTCAGCCTCTACCTGCTCCCTGAGCGGCCGGCCACGCTCATCCTCTATGAGGACCTGGTGCACATTCTCCTAGGCTCTCCCG|AGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAACCCTACCAATGCCGAGGTGCTGCGTGTGCTGGGCAAGCCCAAGCCTGAAG___AGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTG RTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSP|eFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16623 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1608 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44356430:- chr17:42430583-42441221:- chr17:42433798:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Uncharacterised_protein_family_UPF0560(20%)| UPF0560(57%)| 25 14 62 78 138 ENST00000293443.12 ENST00000572316.5 upstream upstream duplicates(23),mismatches(5) CTTCCTCACCAACTCTGTGCCCTGGCGTGTTGACAAGCTGCCCT___TGTATGCGTCTGTCAGCCTCTACCTGCTCCCTGAGCGGCCGGCCACGCTCATCCTCTATGAGGACCTGGTGCACATTCTCCTAGGCTCTCCCG___GTGCCCGCTCCCAGCCCTTGGTGCAGTTCCAGCGCCGGGCTGCCCGCCTGCCTGTCAGCTCCACCTACAGCCAGCTCTGGGCGTCACTTACGCCTGCCAGCACCCAGCAGGAAATGCGGGCTTTCCCTGCCTTCCTGGGCACTGAGGCCTCCAGCTCAG|AGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAACCCTACCAATGCCGAGGTGCTGCGTGTGCTGGGCAAGCCCAAGCCTGAAG___AGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTG FLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSS|eFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16624 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1609 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44363597:- chr17:42430583-42441221:- chr17:42440965:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 7 0 67 138 ENST00000293443.12 ENST00000572316.5 upstream upstream duplicates(1) GCTGGGGCTGCTGCTCGGCAGCGCCTCCCGGGCTCCCGGCAAGTCGCCGCCGGAGCCCCCCAGCCCGCAGG|AGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGG...TGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTGGAGGGCCTGCGTGTCTTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCTTCGGCACGTCCTTGCC LGLLLGSASRAPGKSPPEPPSPQ|eFKEAFSLFDRTPTGEMKITYGQCGDVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16625 FRYL::GABRA4 ENSG00000075539.15::ENSG00000109158.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1610 FALSE NA FALSE NA FRYL ENSG00000075539.15 protein_coding - - chr4:48497357-48780322:- chr4:48780078:- chr4:48499374-48782339:- chr4:48782095:- GABRA4 ENSG00000109158.11 protein_coding - - chr4:46918900-46993581:- chr4:46928755:- chr4:46920917-46995598:- chr4:46930772:- chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488 chr4:46941853,chr4:46941866,chr4:46941873,chr4:46941900,chr4:46941902,chr4:46941904 NA NA chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505 chr4:46943870,chr4:46943883,chr4:46943890,chr4:46943917,chr4:46943919,chr4:46943921 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Neurotransmitter-gated_ion-channel_transmembrane_region(57%) |Neur_chan_memb(1%) 11 30 33 208 83 ENST00000502520.5 ENST00000264318.4 upstream downstream duplicates(13),low_entropy(4),mismatches(3) CAGCCGGGCGCCCGTCGGGCTCTGGGAGAGAGCGAGAGAGAAATCCGGTTAAAATCAGAGTCGGAGGGAGGTTTAACCACAGATCGGTTCCGATCGGATTATTCCTTAAAGGGGACGCGCCATTGTCAAGAGAACGGAGCCAGGGGCCCGAGGGCGGGGACCGGCGGCGCTGGAGGAGCGAGGCAGCTGTACTAGGACTGGGAACGG|AATACAAATGCCAATTTGAACATGAGAAAAAGAACAAATGCTTTGGTTCACTCTGAATCTGATGTTGGCAACAGAACTGAGGTGGGAAACCATTCAAGCAAATCTTCCACAGTTGTTCAAGAATCTTCTAAAGGCACACCTCGGTCTTACTTAGCTTCCAGTCCAAACCCATTCAGCCGTGCAAATGCAGCTGAAACCATATCTGCAGCAAGAGCACTTCCATCTGCTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16628 ANXA7::CFAP70 ENSG00000138279.16::ENSG00000156042.19 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2904 TRUE 1109 ANXA7 ENSG00000138279.16 protein_coding - - chr10:73375101-73414076:- chr10:73387689:- chr10:75134859-75173834:- chr10:75147447:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73299665:- chr10:75013520-75118622:- chr10:75059423:- chr10:73386432,chr10:73386434 chr10:73308295,chr10:73308294 NA NA chr10:75146190,chr10:75146192 chr10:75068053,chr10:75068052 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Annexin(17%)|Tetratricopeptide_repeat(100%) Annexin(8%)|Sel1(100%),TPR_16(100%),TPR_6(100%),TPR_8(100%) 12 18 17 489 83 ENST00000372921.10 ENST00000355577.9 upstream downstream duplicates(7),mismappers(1),mismatches(1) CCTACTTACCCTAGTCAG___CCTGCCACAGTGACTCAGGTCACTCAAGGAACTATCCGACCAGCTGCCAACTTCGATGCTATAAGAGATGCAGAAATTCTTCGTAAGGCAATGAAGGGTTTTG___GGACAGATGAGCAGGCAATTGTGGATGTGGTGGCCAACCGTTCCAATGATCAGAGGCAAAAAATTAAAGCAGCATTTAAGACCTCCTATGGCAAG|GGTCAAGGAAATGATTCCTCCAAGGCCTCCTCTTACCCGTCGGACAGGAGGAGCTCAGAAG___GCAGTGAGTGACTACCACATACAGATCAAGAATATTTCTAGAGCCATTCTAGATGAATACTACAGAATGTTTGGAAAACAGGTGGCCAAACTGGAGAGTGATATGGATAGTGAAAC PTYPSQPATVTQVTQGTIRPAANFDAIRDAEILRKAMKGFGTDEQAIVDVVANRSNDQRQKIKAAFKTSYGK|gqgndsskassypsdrrssegse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16629 ANXA7::CFAP70 ENSG00000138279.16::ENSG00000156042.19 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2904 TRUE 1109 ANXA7 ENSG00000138279.16 protein_coding - - chr10:73375101-73414076:- chr10:73388312:- chr10:75134859-75173834:- chr10:75148070:- CFAP70 ENSG00000156042.19 protein_coding - - chr10:73253762-73358864:- chr10:73299665:- chr10:75013520-75118622:- chr10:75059423:- chr10:73386432,chr10:73386434 chr10:73308295,chr10:73308294 NA NA chr10:75146190,chr10:75146192 chr10:75068053,chr10:75068052 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Annexin(5%)|Tetratricopeptide_repeat(100%) Annexin(0%)|Sel1(100%),TPR_16(100%),TPR_6(100%),TPR_8(100%) 3 2 8 428 83 ENST00000372921.10 ENST00000355577.9 upstream downstream duplicates(3) CCGGGTTGGGCTGTGACGCTGCTGCTGGGGTCAG___...CTTTCCTGGAGGACAGATGCCTTCTCAGTATCCTGGAGGACAACCTACTTACCCTAGTCAG___CCTGCCACAGTGACTCAGGTCACTCAAGGAACTATCCGACCAGCTGCCAACTTCGATGCTATAAGAGATGCAGAAATTCTTCGTAAGGCAATGAAGGGTTTTG|GGTCAAGGAAATGATTCCTCCAAGGCCTCCTCTTACCCGTCGGACAGGAGGAGCTCAGAAG___GCAGTGAGTGACTACCACATACAGATCAAGAATATTTCTAGAGCCATTCTAGATGAATACTACAGAATGTTTGGAAAACAGGTGGCCAAACTGGAGAGTG...TTGCTTTCAAAGAACAACTCAAG___CATGCTGTGGTAAAGATTGTGAGAGATAAATACTTGAAGACAACATCATTTGAAAGCCAGGAGGAACTTCAGACATTT FPGGQMPSQYPGGQPTYPSQPATVTQVTQGTIRPAANFDAIRDAEILRKAMKGF|gsrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16630 EHBP1::WDPCP ENSG00000115504.15::ENSG00000143951.16 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EHBP1 ENSG00000115504.15 protein_coding + + chr2:62673851-63046487:+ chr2:62831158:+ chr2:62900986-63273622:+ chr2:63058293:+ WDPCP ENSG00000143951.16 protein_coding - + chr2:63119559-63827843:- chr2:63664361:+ chr2:63346694-64054977:- chr2:63891495:+ chr2:62834518,chr2:62834619,chr2:62834516 chr2:63645987,chr2:63645984,chr2:63645982 NA NA chr2:63061653,chr2:63061754,chr2:63061651 chr2:63873121,chr2:63873118,chr2:63873116 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(100%)| NT-C2(100%)| 15 9 17 123 32 ENST00000405015.7 unknown downstream upstream duplicates(8),mismatches(2) AAAAAAGTTGTATCTGCCGCTCTTCAGTTTTCATTATCTTGCATTTTTCTGAGGGAAGGAAAAGCCAC___AGATGAAGACATGCAAAGTTTGGCTAGTTTGATGAGTATGAAGCAGGCTGACATTGGCAATTTAGATGACTTCGAAGAAGATAATGAAGATGATGATGAGAACAGAGTGAACCAAGAAGAAAAGGCAGCTAAAATTACAG|GACTGGGCTCTGTCTCTGCAGCTGGTACCATCAACACTGCCAATATGTGGGATTGGGCACTACCATCAGCTCTGCTGCAACTGCCCCTGGATACTGGAGGTGCTGCTTCCATCCTTGGCAAAAGAGCTCCATGAGGGACTCCTTCTTTCTGCACCGGCTCCCAATTCAGTCTATG___...GATTTCGGCTCACTGCAAGCTACGCCTCCGGGGTTC KKVVSAALQFSLSCIFLREGKATDEDMQSLASLMSMKQADIGNLDDFEEDNEDDDENRVNQEEKAAKIT|glgsvsaagtintanmwdwalpsallqlpldtggaasilgkrap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16631 CAPRIN2::RASSF8-AS1 ENSG00000110888.19::ENSG00000246695.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAPRIN2 ENSG00000110888.19 protein_coding - - chr12:30709552-30823302:- chr12:30741020:- chr12:30862486-30976236:- chr12:30893954:- RASSF8-AS1 ENSG00000246695.9 lncRNA - + chr12:25936683-25959765:- chr12:25957470:+ chr12:26089616-26112698:- chr12:26110403:+ chr12:30740235 chr12:25949695 NA NA chr12:30893169 chr12:26102628 NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' high none none none 6 5 13 403 33 ENST00000695402.1 unknown upstream upstream duplicates(3),mismatches(3) GTGAACCACAGTCAGCATGGGGAAAGCCAGCGGGCCTTGAGCCCCCTGCAGTCTACTCTGAGTTCTGCTGCATCTCCTTCCCAAGCGTATGAGACCTATATTGAAAATGGACTCATATGCCTTAAACACAAAATTAGAAACATCGAGAAAAAGAAG___CTCAAACTGGAGGATTATAAGGATCGCCTGAAAAGTGGAGAGCATCTTAATCCAGACCAGTTG___GAAGCTGTAGAGAAATATGAAGAAGTGCTACATAATTTGGAATTTGCCAAGGAGCTTCAAAAAACCTTTTCTGGGTTGAGCCTAGAT|TCCACCTGCAGGTCAAGGAACTAATGAGGTGTGGAGTAACTAAAGGTCAAAAAACAAGAGGAAGAAACAAAGGGCCAAAAAACCCCAAACCTTAAATCAGGTCCTGAGTCAGATACGCTGTAACAAATTCTGCTTCAAGTTTAATATTCTTGTTTTGATGATGTTTAAAAAAAG VNHSQHGESQRALSPLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLD|stcrsrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16635 CHEK2::TTC28 ENSG00000183765.24::ENSG00000100154.15 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28734403:- chr22:29083731-29138410:- chr22:29130391:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28500795:- chr22:28374002-29075828:- chr22:28896783:- chr22:28725338 chr22:28503056 NA NA chr22:29121326 chr22:28899044 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none |CHAT_domain(100%),Tetratricopeptide_repeat(100%) HscB_4_cys(100%)|ANAPC5(100%),CHAT(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%) 6 7 5 171 23 ENST00000416671.5 unknown upstream downstream duplicates(2) GTCGTGATGTCTCGGGAGTCGGATGTTGAGGCTCAGCAGTCTCATGGCAGCAGTGCCTGTTCACAGCCCCATGGCAGCGTTACCCAGTCCCAAGGCTCCTCCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCAGCACGATGCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACACTGAGCTCCTTAGAGACAGTGTCCACTCAGGAACTCTATTCTATTCCTGAGGACCAAGAACCTGAGGACCAAGAACCTGAGGAGCCTACCCCTGCCCCCTGGGCTCGATTATGGGCCCTTCAGGATGGATTTGCCAATCTTG|CTTTATGAAACTCGGTTTGTCAGGAATCACGCAGAAGATTGTTACTGCTAATAAATAGAAATTGTTACTGCTAATGAAAATTATGGGATTGCTGTGATACGGAATTGTCCATTATAAATGTTAAGCTTTCTGCATATCGTAGTCTTTAATGTAATTAGCTATGTCCTAGCAAGATTGTATGTTATTCAAAAGATTAAACTAATCTGAATGTTAAGGATAAAGTAGACC MSRESDVEAQQSHGSSACSQPHGSVTQSQGSSSQSQGISSSSTSTMPNSSQSSHSSSGTLSSLETVSTQELYSIPEDQEPEDQEPEEPTPAPWARLWALQDGFANL|al* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 16636 SLC30A7::EXTL2 ENSG00000162695.12::ENSG00000162694.14 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100965918:+ chr1:101361632-101447313:+ chr1:101431474:+ EXTL2 ENSG00000162694.14 protein_coding - + chr1:100872372-100895179:- chr1:100894968:+ chr1:101337928-101360735:- chr1:101360524:+ chr1:100966371 chr1:100890136 NA NA chr1:101431927 chr1:101355692 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none Cation_efflux_family(100%)| Cation_efflux(100%)| 5 4 6 83 70 ENST00000370112.8 unknown downstream upstream duplicates(2),mismatches(1) TGTTATTCCTCTTTTAAGAGAATCTGTTGGAATATTAATGCAGAGAACTCCTCCCCTATTAGAAAATAGTCTGCCTCAGTGCTATCAGAGG___GTACAGCAGTTGCAAGGAGTTTACAGTTTACAGGAACAGCACTTCTGGACTTTATGTTCTGACGTTTATGTTGGGACCTTGAAATTAATAGTAGCACCTGATGCTGATGCTAGGTGGATTTTAAGCCAAACACATAATATTTTTACTCAG|GTAACAACTTTTAAACATTCACGTGACGGACCACCTTCCCTCAGCCAAACAACTTCCCTGAAAGGCGCCCGAAGGAGCCTTCCCATCCACCGCGGGTGCCCAGGAAAGGCCTGTGGGGCTCTCCTCCCCGCGCTCCACACGCCCTCGCATCCCACCGAGGcGCCAGCTTCTGCCTGCACGTTGCTGAAACTGGC VIPLLRESVGILMQRTPPLLENSLPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARWILSQTHNIFTQ|vttfkhsrdgppslsqttslkgarrslpihrgcpgkacgallpalhtpshpteapasactllkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16640 MARCHF6::SLC12A7 ENSG00000145495.17::ENSG00000113504.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10353917:+ chr5:10353807-10440500:+ chr5:10354029:+ SLC12A7 ENSG00000113504.21 protein_coding - + chr5:1050384-1112063:- chr5:1096468:+ chr5:1050499-1112178:- chr5:1096583:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 2 8 496 9 ENST00000274140.10 unknown downstream upstream duplicates(2),mismatches(2) CTTTCTGTCAGCCTCTCTCCCTCTCCCTCTCCCCTCTCCTTCCTCTCGCTTCCTCTCTCGCACCTGAGCGTACGCACCTGCCCGGGCCCGGCTCCCTCCTCCTCTCCCCTCCCTCTTTCCCCGCCCGGCCGCGGGAGCCTCGTGGCTGCGTCACCGCCGCCCCCCCAGACAAGATGGACACCGCGGAGGAAG|GTGTCTTTCCAAGATGAGTCCCATCCAGGGCCCTTCCCCACTCCTCTTCAATGGTTTCAGTGGATTCCTGCTCAGGCCCTTTTTCTGGACAtAACGGCCAACTGTTTACAGAGAGATCAGTGGTGACTGGCGACACTTTCTGGAGTCAATGGAAGATGAAGGACCAGGAGCCTGG MDTAEE|gvfpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16646 ARID2::KCTD16 ENSG00000189079.18::ENSG00000183775.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2907 TRUE 1110 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45731314:+ chr12:46123489-46301823:+ chr12:46125097:+ KCTD16 ENSG00000183775.11 protein_coding + + chr5:144170873-144485686:+ chr5:144206389:+ chr5:143550437-143865249:+ chr5:143585952:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none ARID/BRIGHT_DNA_binding_domain(92%)|BTB/POZ_domain(100%) ARID(1%)|BTB_2(100%) 5 3 2 131 10 ENST00000334344.11 ENST00000512467.6 downstream upstream duplicates(3),low_entropy(1),mismatches(1) CACGGTCTCTACACCAGAGTCACTACTTTAGGCGGATTCGCGAAG___GTTTCTGAGAAGAATCAGTGGGGAGAAATTGTTGAAGAGTTCAACTTTCCCAGAAGTTGTTCTAACGCTGCCTTTGCTTTAAAACAGTATTACTTGCG|ACGGACATCTGAGTAACTGGGGAATTGGCCTGCCTTGCATGTGAGCTTGATGGAAGATTGGATATAGACGAGTTGATTATATTTTATGAAGTAGCAGCTCACTACCATCCACCATCCAGGGTTTAAACTACTTTTTCAGCATCACTTCACCTGTGGACTCTTATACATTTTGATTTCTTGGGGGAAAAATACTGGGATAAGAGGAGGTCATTTTTTAATAAGTTAGCATCCTTTTCCCTTTCTTACAAGTTGATCCAAA...TCGAGAACAAGGGTCCGCAGTgCCCAACTCCTTCCCTGAGGTGGTAGAGCTGAATGTCGGGGGTCAAGTTTATTTTACTCGCCATTCCACATTGATAAGCA HGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLr|rtse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 16647 ARID2::KCTD16 ENSG00000189079.18::ENSG00000183775.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2907 TRUE 1110 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45731314:+ chr12:46123489-46301823:+ chr12:46125097:+ KCTD16 ENSG00000183775.11 protein_coding + + chr5:144170873-144485686:+ chr5:144473660:+ chr5:143550437-143865249:+ chr5:143853223:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none ARID/BRIGHT_DNA_binding_domain(92%)| ARID(1%)| 1 0 0 131 21 ENST00000334344.11 ENST00000512467.6 downstream upstream duplicates(1) GTTGAAGAGTTCAACTTTCCCAGAAGTTGTTCTAACGCTGCCTTTGCTTTAAAACAGTATTACTTGCG|GTGAGCCTTCCAGATGGTCACCCTCACACTGCGATTGCTGCTGCAAG VEEFNFPRSCSNAAFALKQYYLr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 16649 UBXN2A::EXOC4 ENSG00000173960.14::ENSG00000131558.15 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBXN2A ENSG00000173960.14 protein_coding + + chr2:23927285-24004909:+ chr2:23983033:+ chr2:24150155-24227779:+ chr2:24205903:+ EXOC4 ENSG00000131558.15 protein_coding + - chr7:133253073-134066589:+ chr7:133590831:- chr7:132937829-133751342:+ chr7:133275585:- chr2:23983166 chr7:133592127 NA NA chr2:24206036 chr7:133276881 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none SEP_domain(100%)| SEP(100%)| 2 1 5 157 7 ENST00000404924.5 unknown downstream downstream duplicates(2) GAAGAAACAG___GTAGATGTAAATATAAAATTATGGAAAAACGGATTCACCGTCAACGACGATTTCAGAAGTTATTCCGATGGTGCCAGTCAGCAGTTTTTGAACTCCATCAAAAAGGG___GGAATTACCTTCAGAATTACAGGGAATTTTTGATAAAGAAGAGGTGGACGTTAAAGTTGAAGACAAGAAAAATGAAATATGTTTGTCTACGAAGCCTGTGTTCCAGCCCTTTTCAGGACAGGGTCACAGACTAGGAAG|GTCTCGTTTGGCATCCAGGAAGAATCAAGTCACAGGAATGAATTGAAGATGGTAGATGCAAGGGATTTTATTACTGACGAAAGTGGCTCTCAGAGGGATGGAGAGCTGGAAAGAGGATGCAGTGGAAAGGTGGTCTTCCCCAGAGGTTCGGCCATCCC KKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGr|srlasrknqvtgmn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16656 RAB28::ASTN2 ENSG00000157869.16::ENSG00000148219.18 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB28 ENSG00000157869.16 protein_coding - - chr4:13361354-13484365:- chr4:13474318:- chr4:13362978-13485989:- chr4:13475942:- ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:116976785:- chr9:119185391-120177348:- chr9:119739064:- chr4:13470939,chr4:13470941 chr9:116986269,chr9:116986268 NA NA chr4:13472563,chr4:13472565 chr9:119748548,chr9:119748547 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ras_family(44%)|Annexin-like_domain(100%),Astrotactin-2_C-terminal_beta-hairpin_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),MAC/Perforin_domain(100%) Arf(9%),Gtr1_RagA(9%),Ras(9%),Roc(9%)|ASTN1_2_EGF_Fn(100%),ASTN_1_2_N(26%),ASTN_2_hairpin(100%),Annexin_like(100%),FXa_inhibition(100%),MACPF(100%),NHL(100%),zf-C3HC4(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%) 2 1 2 254 2 ENST00000338176.8 ENST00000313400.9 upstream downstream none GTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCGCCTCCGGGAAG___ACCTCCTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGATAACATTGCCAG___GAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGATAAATATATCTATGGAGCACAG|GAGAGTGCAGCTGTCATGAAGGCTATGCCCCTGACCCTGTTCACAGACACCTGTGTGTGCGCAGTGACTGGGGACAGAGTGAAGG___ACCTTGGCCCTACACGACACTTGAGAGGGGCTATGATCTGGTGACAGGGGAGCAAGCCCCTGAAAAG...CCTGCTGTCTTCCTTCGGGCCAGTTCGTGACTGCTCTCGGAACAATGGGGGCTGCACTCGCAACTTCAAGTGTGTGTCTGACCGGCAGGTGGATTCCTC SDSEEESQDRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ|esaavmkampltlftdtcvcavtgdrvkdlgptrhlrgamiw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16657 RPRD1A::ENSG00000289174 ENSG00000141425.18::ENSG00000289174.1 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPRD1A ENSG00000141425.18 protein_coding - - chr18:35984387-36067576:- chr18:35993102:- chr18:33564350-33647539:- chr18:33573065:- ENSG00000289174 ENSG00000289174.1 lncRNA - - chr12:88781256-88847391:- chr12:88832739:- chr12:89175033-89241168:- chr12:89226516:- chr18:35991518,chr18:35991520 chr12:88833767,chr12:88833766 NA NA chr18:33571481,chr18:33571483 chr12:89227544,chr12:89227543 NA NA sense sense stop-codon 3'UTR/splice-site intron translocation high none CID_domain(100%),Cell-cycle_alteration_and_expression-elevated_protein_in_tumour(100%)| CID(100%),CREPT(100%)| 0 1 3 263 2 ENST00000590898.5 unknown upstream downstream none CTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGgCCCATCGTCACCGTGTGGGAGCGGGAGCTGgGGAAAG___GAGTACAAGCGCAAGCTAGCCAGA...CTCAGGTCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCCCAATGTCACTGGCAGCCACATGCACCTGCCCTTTGCGGGAGACATCTACAGTGAAGATTGATGGACCAGCCTCTTTCCAGGTCCCAGGACTTTGCAAGAGATGGAGACAG|CAGAACCATGATATTGGCTGTATTTCTCTGGAGAATTCTAATTTATCAGAGGAAAGAAGCTTTCCAACTTCTTCCATGCTTGGCCATCAGTGTGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16658 EXD3::EHMT1 ENSG00000187609.16::ENSG00000181090.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137423114:- chr9:140201348-140317663:- chr9:140317566:- EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137710967:+ chr9:140513444-140764468:+ chr9:140605419:+ chr9:137395628 chr9:137652948 NA NA chr9:140290080 chr9:140547400 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Pre-SET_motif(100%),SET_domain(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Pre-SET(100%),SET(100%) 0 3 1 94 225 ENST00000460390.6 ENST00000460843.6 upstream upstream duplicates(3) CCGCGCTGGCCTTGGTGCGCCGGATAAAGCCCTCCGGGCCAGCGGCTGCGGTCGGGCCAAGGTTCCGCGCCGGGCGTGGACGGTGTGGGGCGGTCCCGGCCCCGCAG|GCAGTTCCGGCGAGGGGGGAGCCTCAGCAGGATTGCTGTGTGAAAACCGAGCTGCTGGGAGAAG___AGACACC...TGTGAAAACAGCGATGCCAGCAGTCATGCAAATGCTGCAAAGCACACTCAGGACAGCGCAAGGGTCAACCCCCAGGATGGCACCAACACACTAACTCGGATAGCGGAAAATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-602 chr9:137838419-137838516:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16669 KCTD8::SULT1E1 ENSG00000183783.7::ENSG00000109193.12 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2910 TRUE 1111 KCTD8 ENSG00000183783.7 protein_coding - - chr4:44173903-44448809:- chr4:44447563:- chr4:44175920-44450826:- chr4:44449580:- SULT1E1 ENSG00000109193.12 protein_coding - - chr4:69841212-69860145:- chr4:69842106:- chr4:70706930-70725863:- chr4:70707824:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BTB/POZ_domain(100%)|Sulfotransferase_domain(11%) BTB_2(100%)|Sulfotransfer_1(0%) 1 1 1 13 12 ENST00000360029.4 ENST00000226444.4 upstream downstream duplicates(1),mismatches(1) CTTTGATCGCCTGTCCGAGGCCGGCTTCCACATGGTGGCGTGTAACTCCTCGGGCACCGCCGCCTTCGTCAACCAGTACCGCGACGACAAGATCTGGAGCAGCTACACCGAGTACATTTTCTTCC|GAATTACAGGAGACTGGAAAAATCACTTTACAGTAGCCCTGAATGAAAAATTTGATAAACATTATGAGCAGCAAATGAAGGAATCTACACTGAAGTTTCGAACTGAGATCTAAGAAGGTCTTTCcTTACTTAACATATCTG...GATTGCTAGAAAAaAaAaAATCATGGATTATGTTGACATTTTtTTTTTAAATTTTTGTTTAACT[tt]TTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTG FDRLSEAGFHMVACNSSGTAAFVNQYRDDKIWSSYTEYIFF|rITGDWKNHFTVALNEKFDKHYEQQMKESTLKFRTEI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16670 KCTD8::SULT1E1 ENSG00000183783.7::ENSG00000109193.12 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2910 TRUE 1111 KCTD8 ENSG00000183783.7 protein_coding - - chr4:44173903-44448809:- chr4:44447563:- chr4:44175920-44450826:- chr4:44449580:- SULT1E1 ENSG00000109193.12 protein_coding - - chr4:69841212-69860145:- chr4:69847792:- chr4:70706930-70725863:- chr4:70713510:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none BTB/POZ_domain(100%)|Sulfotransferase_domain(48%) BTB_2(100%)|Sulfotransfer_1(37%) 0 0 0 13 4 ENST00000360029.4 ENST00000226444.4 upstream downstream duplicates(1),mismatches(1) CCGAGTACATTTTCTTCC|TTCCTTATGGTTCCTGGTATAAACATGTAAAATCTTGGTGGGAAAAGGGAAAGAGTCCACGTGTACTATTTCTTTTCTACGA...GTCGCCCTTCATGAGAAAGG___GAATTACAGGAGACTGGAAAAATCACTTTACAGTAGCCCTGAATGAAAAATTTGATAAACATTATGAGCAGCAAATGAAGG EYIFF|lPYGSWYKHVKSWWEKGKSPRVLFLFY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16672 MACROD2::MGAT4C ENSG00000172264.19::ENSG00000182050.14 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MACROD2 ENSG00000172264.19 protein_coding + + chr20:13995369-16053197:+ chr20:14002404:+ chr20:13976015-16033842:+ chr20:13983050:+ MGAT4C ENSG00000182050.14 protein_coding - - chr12:85955666-86838904:- chr12:86658959:- chr12:86349445-87232681:- chr12:87052736:- chr20:14046559,chr20:14046560 chr12:86694129,chr12:86694139 NA NA chr20:14027205,chr20:14027206 chr12:87087906,chr12:87087916 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none |N-Acetylglucosaminyltransferase-IV_(GnT-IV)_conserved_region(100%) |Glyco_transf_54(100%) 0 1 1 9 2 ENST00000217246.8 unknown downstream downstream mismappers(1) GGAACTTGCAGCTTAAAGCCAGCCACCCCCACGGCAACATGTACCCCAGCAACAAGAAGAAAAAGGTGTGGAGAGAGGAGAAAG___AACGTTTATTGAAGATGACCTTAGAAGAGAGACGCAAAGAATACCTAAGAGACTATATTCCCCTGAACAGCATTCTATCATGGAAGGAGGAGATGAAGGGCAAGGGCCAAAATGATG|GTTGACAGGACGGCTTTTATTCAGAATATTAGAA...CAAGAAAGTATAATTTTCCCGGAGGAGTGAATAATTGTGAACAACAATACAATTTAACACAAGTGGTAAAAAAAATACTTTTTGAAAAAATGACATTTGAT MYPSNKKKKVWREEKERLLKMTLEERRKEYLRDYIPLNSILSWKEEMKGKGQND|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16673 WWOX::TBL1XR1 ENSG00000186153.19::ENSG00000177565.19 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78535842:+ chr16:78133297-79246564:+ chr16:78569739:+ TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177034325:- chr3:176737128-176945788:- chr3:176752113:- chr16:78571801,chr16:78571799 chr3:177035017,chr3:177035016 NA NA chr16:78605698,chr16:78605696 chr3:176752805,chr3:176752804 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none WW_domain(100%),short_chain_dehydrogenase(98%)|WD_domain__G-beta_repeat(39%) KR(100%),WW(100%),adh_short(2%),adh_short_C2(100%)|ANAPC4_WD40(0%),PD40(100%),WD40(57%) 1 0 1 1 174 ENST00000627394.3 ENST00000457928.7 downstream downstream none CAAaATTCATCGCAGCTGGTGGGTGTACACACTGCTGTTTACCTTGGCGAGGCCTTTCACCAAGTCCATG___AACACTGTTCCCGTTGGCCATGGGATCAGGGGAAGAGAGAAGGAAGAGAGAACCAGACACAAGTTGGAGGGAATCCATCTCCAGTGCTGCTCAGAG|ATATGGAGTATGAAACAAGACAATTGTGTCCATGATTTGCAAGCACATAATAAAGAAATTTATACTATCAAATGGAGTCCAACAGaACCAGGGgCTAATAATCCAA kIHRSWWVYTLLFTLARPFTKSMNTVPVGHGIRGREKEERTRHKLEGIHLQCCSE|IWSMKQDNCVHDLQAHNKEIYTIKWSPTePGaNNP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation 16674 TSPAN4::RPLP2 ENSG00000214063.12::ENSG00000177600.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1614 FALSE NA FALSE NA TSPAN4 ENSG00000214063.12 protein_coding + + chr11:842812-867116:+ chr11:850367:+ chr11:842812-867116:+ chr11:850367:+ RPLP2 ENSG00000177600.9 protein_coding + + chr11:809965-812880:+ chr11:812535:+ chr11:809965-812880:+ chr11:812535:+ chr11:851681 chr11:811731 NA NA chr11:851681 chr11:811731 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Tetraspanin_family(5%)|60s_Acidic_ribosomal_protein(57%) Tetraspanin(0%)|Ribosomal_60s(11%) 33 18 60 1151 15697 ENST00000397397.7 ENST00000321153.9 downstream upstream duplicates(17),mismatches(11),multimappers(3) GGGCGGCGCGAGCGGGAGGCGGCGGCGCAG___...CTTGGGGCTTCCTTGGTCGCACCCACCACCTGCCTGCCCACTGGTCAGCCTTCAGGGACCCTGAGCACCGCCTGGTCTCTTTCCTGTGGCCAGCCCAG___AACTGAAGCGCTGCGGCATGGCGCGCGCCTGCCTCCAGGCCGTCAAGTACCTCATGTTCGCCTTCAACCTGCTCTTCTGG|GTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTGCTGGTTCTGCCCCTGCTGCAG___CAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGG MARACLQAVKYLMFAFNLLFW|vlaslpvyllvgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16679 DNAL1::MIDEAS ENSG00000119661.15::ENSG00000156030.14 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAL1 ENSG00000119661.15 protein_coding + + chr14:73644875-73703732:+ chr14:73671597:+ chr14:74111578-74170435:+ chr14:74138300:+ MIDEAS ENSG00000156030.14 protein_coding - + chr14:73715122-73790285:- chr14:73731628:+ chr14:74181825-74256988:- chr14:74198331:+ chr14:73685956,chr14:73685956 chr14:73726379,chr14:73726377 NA NA chr14:74152659,chr14:74152659 chr14:74193082,chr14:74193080 NA NA sense antisense unknown CDS/splice-site intron deletion/read-through/5'-5' medium none none LRR_4(44%)| 5 4 5 204 13 ENST00000311089.7 unknown downstream upstream duplicates(2),low_entropy(1),mismatches(2) GCGAAAGCAACAACAATCAAAGAAGCCTTAGCGAGATGG___...CGA___GAAGCTTTCACTGTCTACAAACTGCATTGAAAAAATTGCCAACCTGAATGGCTTAA___AAAACTTGAGGATATTATCTTTAGGAAGAAACAACATAAAGAACTTAAATGGACTG|GTGTGGTAATGCTATTGAGATAATGTTGGAGAAGAAAGAGTCCTGACGTATTTCAGATACAAACTGAAGTATACACGGATGGAATGACACGATGTCTCAGGATGTGCTTCAAAATAACCCAGTGGCATGGAGAAGCAGAGGCACAGGTGAAACAAGATTGGCTATGTTTTGATAACTGTGAAATCTGGGTGATGGCTAAACACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16680 UBE2E1::NKIRAS1 ENSG00000170142.12::ENSG00000197885.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2E1 ENSG00000170142.12 protein_coding + + chr3:23805955-23891640:+ chr3:23811510:+ chr3:23847446-23933131:+ chr3:23853001:+ NKIRAS1 ENSG00000197885.11 protein_coding - + chr3:23889951-23946591:- chr3:23915544:+ chr3:23931442-23988082:- chr3:23957035:+ chr3:23888958,chr3:23888956,chr3:23888957 chr3:23910360,chr3:23910358,chr3:23910356 NA NA chr3:23930449,chr3:23930447,chr3:23930448 chr3:23951851,chr3:23951849,chr3:23951847 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Ubiquitin-conjugating_enzyme(17%)| UQ_con(4%)| 0 2 10 271 76 ENST00000306627.8 unknown downstream upstream duplicates(2),mismatches(1) ACACCCCCAAGAAGAAGGAGAGTAAAGTCAGCATGAGCAAAAACTCCAAACTCCTCTCCACCAGCGCCAAGAG___...GCGGACCATGAAGGAAGTGGGCAGACCCCGGGAAGTTAGAGGACGCCCGGGGAAAAGCAG___AATTCAGAAGGAGCTGGCGGACATCACTTTAGACCCTCCACCTAATTGCAG|CCTCAAAAGGAGCAATCCGAGTTATCTTTTTAAAATGTACGCCATATGAAGTCATCCTTCTGTTCAAAATCTGCCAATGAAATCCAAAGTCCATGTGAGAACCTTCACCTCTCCGACGTCATTTCCCACTTTC...___ACCTCAAAGACAGCGGCTCCACCGCGGTACGCGGCCACCGGCTTTGGAGCCTGGACCCCAACTTGCCTCCTC rtmkevgrprevrgrpgksRIQKELADITLDPPPNCs|lkrsnpsylfkmyai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16683 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1615 FALSE NA FALSE NA PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79795638:- chr12:80167343-80329240:- chr12:80189418:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613609:- chr12:79968759-80084744:- chr12:80007389:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 4 7 0 358 481 ENST00000261207.9 ENST00000328827.9 upstream downstream duplicates(2),mismatches(1) AAATGAAAGAG___AGGGAGAAAAAAGAGAAGAGGAaAAAGAAGGAGAAGATAAATCACAACCTAAATCAATCAGAGAACGACGACGACCAAGAGAGAAAAGAAGATCTACAGGAGTTTCATTTTGGACACAAGAT|GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG___CACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATAGAAGTGGGTTCCCTAGATATAACAGGGATGCAAATGTTTCAGGTACTCTGGTTTCAAGTAGCACACTGGAAA NEREGEKREEEKEGEDKSQPKSIRERRRPREKRRSTGVSFWTQD|EPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANVSGTLVSSSTLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16687 COPZ1::KRT2 ENSG00000111481.10::ENSG00000172867.4 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA COPZ1 ENSG00000111481.10 protein_coding + + chr12:54301202-54351846:+ chr12:54325181:+ chr12:54694986-54745630:+ chr12:54718965:+ KRT2 ENSG00000172867.4 protein_coding - + chr12:52644558-52652211:- chr12:52647814:+ chr12:53038342-53045995:- chr12:53041598:+ chr12:54326912 chr12:52646284 NA NA chr12:54720696 chr12:53040068 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Clathrin_adaptor_complex_small_chain(2%)| Clat_adaptor_s(0%)| 0 7 0 3119 15 ENST00000552848.5 unknown downstream upstream mismatches(2) ACCAGCTGCGGGGCAAGATGGAGGCGCTGATTTTG|GCTGTCTCCATGTCTCCCGACAGTCACCTGGAGCTCCTCATACTGATATGGGGAGAAGAGGACAGTTTGCAAGGAAGTTCCAGCCTGGCTCACATTCCAGACTGACTGGAGTGAAGGAGAGCTGGTTACTGGTCCAGGGAGGGTCAACCCAGCTAAATGTCATGGCTGCATTCATGAGAGG...___TGAGCCCATCCAGATATCTCTTGAGGCTGTCGATATgCCCCTGGAAGATGGGCTCCAGGTTGATGGGGC...CATTCATTTGTTGTcGCcGCcCCCATTTGGTCTGTAACcCCgGGTcCTGCTGCTCCAAGcACCGCACCTGCCATGACCAGAAGGAGAGCACATGAGTTCTA MEALIL|avsmspdshlelliliwgeedslqgssslahipd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16722 TJP2::TRPM3 ENSG00000119139.21::ENSG00000083067.26 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TJP2 ENSG00000119139.21 protein_coding + - chr9:69121264-69274615:+ chr9:69170656:- chr9:71736180-71889531:+ chr9:71785572:- TRPM3 ENSG00000083067.26 protein_coding - - chr9:70529060-71446904:- chr9:70591205:- chr9:73143976-74061820:- chr9:73206121:- chr9:69143763,chr9:69143781 chr9:70595745,chr9:70595758 NA NA chr9:71758679,chr9:71758697 chr9:73210661,chr9:73210674 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |Ion_transport_protein(50%),Tetramerisation_domain_of_TRPM(100%) |Ion_trans(75%),TRPM_tetra(100%) 0 1 1 52 1 unknown ENST00000357533.6 upstream downstream none GTTGCCAGAACAGAGACCAAAGAGGAGCTGCCAGAAAGGAAAGAAAACGCTTCTGGAGGAGAGTGTCCAAAAAGCCAAGGAAAGAACAAACTTCAGGAAAGAGGGAGAGGCCAACAACATGGAATTTCGAGGAGGTCAATTAAG|ATGATAGACATGATGTACTTTGTCATCATTATGCTGGTGGTTCTGATGAGCTTTGGGGTCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16729 XKR9::ENSG00000285579 ENSG00000221947.8::ENSG00000285579.1 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA XKR9 ENSG00000221947.8 protein_coding + + chr8:70669339-70790371:+ chr8:70734182:+ chr8:71581574-71702606:+ chr8:71646417:+ ENSG00000285579 ENSG00000285579.1 lncRNA + - chr8:70669369-71228629:+ chr8:70749957:- chr8:71581604-72140864:+ chr8:71662192:- chr8:70767675,chr8:70767515 chr8:70767515,chr8:70767675 NA NA chr8:71679910,chr8:71679750 chr8:71679750,chr8:71679910 NA NA sense antisense out-of-frame CDS intron inversion/3'-3' low none XK-related_protein(84%)| XK-related(99%)| 6 2 0 40 7 ENST00000408926.8 unknown downstream downstream none TTATCGTGGATGCTGAGTGTTGTACTTCTACTATTCTTAAATGTTAAGATTGCTTTATTTCTGTTGTTATTTCTTTGGTTGTTAGGTATAATATGGGCATTTAAAAACAACACCCAGTTTTGTACTTGTATAAGTATGGAATTCTTATATAGGATTGTTGTTGGATTCATTCTTATCTTTACATTTTTTAATATTAAGGGACAGAATACCAAGTGTCCAATGTCTTGTTATTATATTGTTA|TTCCTGATCTAATCACTACTTGTATTTAACAGTCTCAGTAGATTATATTTTCTAAATATCAGGAATAAACACAAC LSWMLSVVLLLFLNVKIALFLLLFLWLLGIIWAFKNNTQFCTCISMEFLYRIVVGFILIFTFFNIKGQNTKCPMSCYYIV|ipdlittci* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16730 APAF1::ANKS1B ENSG00000120868.14::ENSG00000185046.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APAF1 ENSG00000120868.14 protein_coding + + chr12:98645290-98735433:+ chr12:98680402:+ chr12:99039068-99129211:+ chr12:99074180:+ ANKS1B ENSG00000185046.21 protein_coding - + chr12:98726457-99984936:- chr12:99057848:+ chr12:99120235-100378714:- chr12:99451626:+ chr12:98682838 chr12:99046601 NA NA chr12:99076616 chr12:99440379 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none APAF-1_helical_domain(100%),Caspase_recruitment_domain(100%),NB-ARC_domain(100%),WD_domain__G-beta_repeat(20%)| APAF1_C(100%),CARD(100%),CARD_2(100%),NB-ARC(100%),WD40(6%)| 1 2 2 69 16 ENST00000551964.6 unknown downstream upstream duplicates(1) TTCCCGCTTAGTTGTCCGCCCCCACACAGATGCTGTTTACCATGCCTGCTTTTCTGAGGATGGTCAGAGAATAGCTTCTTGTGGAGCTGATAAAACCTTAC...CTAGAAATCAAGGCTCATGAGGATGAAGTGCTTTGTTGTGCATTCTCTACAGATGACAGATTTATAGCAACCTGCTCAGTGGATAAAAAAGTGAAG|GAGAAAGATGAAGACTCGTGGAGCAAACCTAAATTTAACCCAAAGCTTGGAATCTACCCTAGCTCGATGGGGCTCAGGAAAGTCCAGATGAAGTTAGCTGAAGCACAGCAGACCCGTGAGTAAGAAAAAAATATTTTTTGTTGTTGT...TATGGAAAAAGCCAAAAGACAGAACATCCTGGAGAATAGAtCCACTCTTTGACTGGAAGCTTGGAGGATGATT___AACCCTcCATTCTATGCTGAATTCTACT LEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK|ekdedswskpkfnpklgiypssmglrkvqmklaeaqqtre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16733 BLTP3B::ANKS1B ENSG00000111647.13::ENSG00000185046.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2919 TRUE 1112 BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100039596:- chr12:100422233-100536652:- chr12:100433374:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99782097:- chr12:99120235-100378714:- chr12:100175875:- chr12:100029975 chr12:99796407 NA NA chr12:100423753 chr12:100190185 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(100%)|Ankyrin_repeats_(3_copies)(13%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(100%)|Ank_2(0%),Ank_3(7%),Ank_4(6%),Ank_5(5%),DUF3699(100%),PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 1 0 0 151 17 ENST00000279907.12 ENST00000547776.6 upstream downstream none GCTCTTTTCATATCAGAG___ATTCTCACATGCTTAACACTGGAAATGATTTGAAAGAAAATGTCAAAAGCGATTCAGTGCTGCTGACCAGTGGAAAGTATGAT...CACTCAGACAAGCCCAGGGGTTCCTTGGCCTTCTCAGTCAGCTAACTTTCCTGAGTTCTCCTTTGACTTCACTAGGGAACAG|ACAGAAAAGGGGAGTGCAC TQTSPGVPWPSQSANFPEFSFDFTREQ|TEKGSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16734 BLTP3B::ANKS1B ENSG00000111647.13::ENSG00000185046.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2919 TRUE 1112 BLTP3B ENSG00000111647.13 protein_coding - - chr12:100028455-100142874:- chr12:100047530:- chr12:100422233-100536652:- chr12:100441308:- ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99782097:- chr12:99120235-100378714:- chr12:100175875:- chr12:100029975 chr12:99796407 NA NA chr12:100423753 chr12:100190185 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(100%)|Ankyrin_repeats_(3_copies)(13%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(100%)|Ank_2(0%),Ank_3(7%),Ank_4(6%),Ank_5(5%),DUF3699(100%),PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 0 0 0 175 17 ENST00000279907.12 ENST00000547776.6 upstream downstream mismatches(1) CTGTAATTCATTtCAAATCCTCTCCTGAGATTTCTCTGAGgTTTGAAAGTGGGCCTGtcGCTGTAATACAtTCTTTACTTGtAGAAAA...GTACATATTGATCATCTTGTaGTAGAGAGAAGTGACGATGGCTCTTTTCATATCAGAG|ACAGAAAAGGGGAGTGCACTTCATGAAGCAGCTTTGTTTGGA VHIDHLVVERSDDGSFHIR|drkgects* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16735 C2CD2::PRDM15 ENSG00000157617.17::ENSG00000141956.14 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA C2CD2 ENSG00000157617.17 protein_coding - - chr21:41885112-41954018:- chr21:41912332:- chr21:43305221-43374127:- chr21:43332441:- PRDM15 ENSG00000141956.14 protein_coding - - chr21:41798225-41879482:- chr21:41810836:- chr21:43218385-43299591:- chr21:43231192:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none C2_domain(52%),Synaptotagmin-like__mitochondrial_and_lipid-binding_domain(100%)|Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(20%) C2(33%),SMP_C2CD2L(100%)|zf-C2H2(11%) 0 3 1 67 71 ENST00000380486.4 ENST00000422911.6 upstream downstream mismatches(1) GTGTGCGTCGTGCAGCTGAACGATCCTGTTCAGAGGTTCTCCAGCACCCTGACGAAAAACACTCCGGACCTCATGTGGGAAGAGGAATTCACCTT|GGATTAAAGATTTCATGTGTGAATTGTGTGGGAAGACATTCAGCGAGAGGAACACCATGGAGACCCACAAGCTCATCCACACAG___TGGGCAAGCAGTGGACGTGCTCCGTGTGCGACAAGAAGTACGTGACCGAGTACATGCTGCAGAAGCACGTTCAGCTCACACACGACAAGGTGGAGGCGCAGAGCTGCCAGCTGTGCGGGACCAAGGTGTCCACCAGGGCCTCCATGAGCCGACACATGCGGCGCAAGCACCCCG VCVVQLNDPVQRFSSTLTKNTPDLMWEEEFTl|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16759 GCDH::POLR2E ENSG00000105607.13::ENSG00000099817.12 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GCDH ENSG00000105607.13 protein_coding + + chr19:12891160-12914207:+ chr19:12897863:+ chr19:13001974-13025021:+ chr19:13008677:+ POLR2E ENSG00000099817.12 protein_coding - - chr19:1086574-1095380:- chr19:1091907:- chr19:1086573-1095379:- chr19:1091906:- chr19:12908792 chr19:1093284 NA NA chr19:13019606 chr19:1093283 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Acyl-CoA_dehydrogenase__C-terminal_domain(90%),Acyl-CoA_dehydrogenase__N-terminal_domain(100%),Acyl-CoA_dehydrogenase__middle_domain(100%)|RNA_polymerase_Rpb5__C-terminal_domain(100%),RNA_polymerase_Rpb5__N-terminal_domain(18%) Acyl-CoA_dh_1(5%),Acyl-CoA_dh_2(33%),Acyl-CoA_dh_M(100%),Acyl-CoA_dh_N(100%)|RNA_pol_Rpb5_C(100%),RNA_pol_Rpb5_N(1%) 1 0 1 166 2133 ENST00000222214.10 ENST00000615234.5 downstream downstream duplicates(2),low_entropy(1) CAA___GGCTGCCCCCGAGATGGTTTCTCTGCTGAAGAGGAATAACTGTGGGAAAGCCCTGGACATCGCCCGCCAGGCCCGAGACATGCTGGGGGGtAATGGGATTTCTGACGAGTATCACGTGATCCGGCACGCCATGAACCTGGAGGCCGTGAACACCTACGAAG|AGGAGCCCAAGGTGGGCATCAAGACCATCAAGGTGTACTGCCAGCGCATGCAGGAGGAGAACATCACACGGGCTCTCATCGTGGTGCAGCAGGGCATGACACCCTCCGCCAAGCAG___TCCCTGGTCGACATGGCCCCCAAGTACATCCTGG KAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE|eEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYIL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16768 ENSG00000272410::LMCD1-AS1 ENSG00000272410.5::ENSG00000227110.7 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000272410 ENSG00000272410.5 protein_coding + + chr3:10249372-10285796:+ chr3:10260670:+ chr3:10291056-10327480:+ chr3:10302354:+ LMCD1-AS1 ENSG00000227110.7 lncRNA - + chr3:7951263-8611924:- chr3:8596352:+ chr3:7992950-8653610:- chr3:8638038:+ chr3:10268809,chr3:10268803 chr3:8594534,chr3:8594518 NA NA chr3:10310493,chr3:10310487 chr3:8636220,chr3:8636204 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none none none 50 28 93 511 78 ENST00000437082.5 unknown downstream upstream duplicates(12),mismatches(6) GCCAAGACTGCAGAAGGAGCAGCCAGGAGTGTCACAGTCACTGCTGCTCAGAAGGAGAAAGACGCAACCCCAGAGGTCAGCATGGAGGAGGATAAGACAGTGCCAGAGAGGAGCAGCTTCTATGACAGGAGAGTAGTTATAGACCCTCAAGAGAAACCCAGTGAGGAGCCCCTTGGGGACCGAAGGACTGTCATTGACAAATGCTCTCCACCCCTAGAGTTCTTGGATGACTCTGACTCTCATTTAGAAATCCAAAAG|GGCGAAGCCAGTGCAATGCCAGTGACGTCAAGGAAGATTTGGGCTATGTAGAAGTCAGCTCGGTACTGACCAGCAGTCAGGGCTGTCAGAGGATAAAATGGGTTGTCTCCAGAGAGACTGAGCTCCCCGTCACTGGAAGTCATCAAGCACAACAGAACGACCACCTCAGAGGGGTACTAAGAAGGTCGTCGCTGGCCAAGATGCTCCCTGTGGGCCCTTTTATCTCCAGGAACTGAGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16769 TATDN2::LMCD1-AS1 ENSG00000157014.11::ENSG00000227110.7 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TATDN2 ENSG00000157014.11 protein_coding + + chr3:10248023-10281218:+ chr3:10260670:+ chr3:10289707-10322902:+ chr3:10302354:+ LMCD1-AS1 ENSG00000227110.7 lncRNA - + chr3:7951263-8611924:- chr3:8596352:+ chr3:7992950-8653610:- chr3:8638038:+ chr3:10268809,chr3:10268803 chr3:8594534,chr3:8594518 NA NA chr3:10310493,chr3:10310487 chr3:8636220,chr3:8636204 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 50 28 93 511 78 ENST00000287652.8 unknown downstream upstream duplicates(12),mismatches(7) GCCAAGACTGCAGAAGGAGCAGCCAGGAGTGTCACAGTCACTGCTGCTCAGAAGGAGAAAGACGCAACCCCAGAGGTCAGCATGGAGGAGGATAAGACAGTGCCAGAGAGGAGCAGCTTCTATGACAGGAGAGTAGTTATAGACCCTCAAGAGAAACCCAGTGAGGAGCCCCTTGGGGACCGAAGGACTGTCATTGACAAATGCTCTCCACCCCTAGAGTTCTTGGATGACTCTGACTCTCATTTAGAAATCCAAAAG|GGCGAAGCCAGTGCAATGCCAGTGACGTCAAGGAAGATTTGGGCTATGTAGAAGTCAGCTCGGTACTGACCAGCAGTCAGGGCTGTCAGAGGATAAAATGGGTTGTCTCCAGAGAGACTGAGCTCCCCGTCACTGGAAGTCATCAAGCACAACAGAACGACCACCTCAGAGGGGTACTAAGAAGGTCGTCGCTGGCCAAGATGCTCCCTGTGGGCCCTTTTATCTCCAGGAACTGAGCCT AKTAEGAARSVTVTAAQKEKDATPEVSMEEDKTVPERSSFYDRRVVIDPQEKPSEEPLGDRRTVIDKCSPPLEFLDDSDSHLEIQK|geasampvtsrkiwam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16775 ATP2C1::ALG1L2 ENSG00000017260.20::ENSG00000251287.9 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1616 TRUE 2925 TRUE 1113 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130894775:+ chr3:130569439-130735556:+ chr3:130613619:+ ALG1L2 ENSG00000251287.9 protein_coding + + chr3:130081831-130113227:+ chr3:130091261:+ chr3:129800674-129832070:+ chr3:129810104:+ chr3:130918851,chr3:130918852 chr3:130082484,chr3:130082482 NA NA chr3:130637695,chr3:130637696 chr3:129801327,chr3:129801325 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |Glycos_transf_1(100%) 32 60 34 641 128 ENST00000533801.6 ENST00000425059.1 downstream upstream duplicates(5),inconsistently_clipped(1),mismatches(6) CAGCCGTGGGACGCGTGGCCGGGAGCGGGGGTGACAGCCTGGGATTCCGGGGGCTTCTCTTCCTTGTCCTCCTCCTCTCCTCTCTATTCCCAGTGTGGCCGTGGCTGACACTAAAGACTTTGTAGCCATCAACCCGAGTGCAGTTTCGATGGAAAATGAAG|GGCTGTGACCGTCTACGACAAGCCGGCATCTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCG___CTCAGAACCTGAGGACCCAGACACAGAGCaGTCGGCCTTCACGGAGCGGGATTCTGGGAGCGGGCTGGTGACGCGTCTCCACGAGCGGCCAGCCCTGCTGGTCAGCAGCACAAGCTGGACAG___AGTTTGAACAACTGACTCTTGACGGACAGAACCTTCCTTCTCTCGTCTGTGTGATAACAG___AAGAGCCCCTGTCCCAGTTACTGCTGCTGAGCC MK|gcdrlrqagifl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16776 ATP2C1::ALG1L2 ENSG00000017260.20::ENSG00000251287.9 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2925 TRUE 1113 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130894337:+ chr3:130569439-130735556:+ chr3:130613181:+ ALG1L2 ENSG00000251287.9 protein_coding + + chr3:130081831-130113227:+ chr3:130091261:+ chr3:129800674-129832070:+ chr3:129810104:+ chr3:130918851,chr3:130918852 chr3:130082484,chr3:130082482 NA NA chr3:130637695,chr3:130637696 chr3:129801327,chr3:129801325 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none |Glycos_transf_1(100%) 1 5 14 175 128 ENST00000533801.6 ENST00000425059.1 downstream upstream duplicates(1),mismatches(3) CCCCGCCCGCCCTCTCTCCCTCCCTTCCTCCCTCCCGCTCGCTTCTTCTCACGCCGGGAGCAGGCTCCCGCCTCGCACCGCTGCCCCGCGAGCAGCTCCTCTTCTCCCGAGGCGCGCGGGGCGCCCCCGCGAGCCCCGCGGCTGAGACCCCGCAGCCTGGAGGAGGGCTGTCCGGGGCTTTGG|GGCTGTGACCGTCTACGACAAGCCGGCATCTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCG___CTCAGAACCTGAGGACCCAGACACAGAGCaGTCGGCCTTCACGGAGCGGG...___AGTTTGAACAACTGACTCTTGACGGACAGAACCTTCCTTCTCTCGTCTGTGTGATAACAG___GGTCGGTGGACCTGGATGTCTGTCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16777 ATP2C1::ALG1L2 ENSG00000017260.20::ENSG00000251287.9 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2925 TRUE 1113 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130850928:+ chr3:130569439-130735556:+ chr3:130569772:+ ALG1L2 ENSG00000251287.9 protein_coding + + chr3:130081831-130113227:+ chr3:130091261:+ chr3:129800674-129832070:+ chr3:129810104:+ chr3:130918851,chr3:130918852 chr3:130082484,chr3:130082482 NA NA chr3:130637695,chr3:130637696 chr3:129801327,chr3:129801325 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none |Glycos_transf_1(100%) 1 2 1 12 128 ENST00000504381.5 ENST00000425059.1 downstream upstream duplicates(1) CAGGAACTCTACCCAAAAGAGGAAACAGCAAGGAGAACATTTGCTTTGTTTGTAGGAGGGAAGTgGTCGAGCTACAAACAAATCTTTAGGCATCTGAGGAATTGCTAAGTTTCTAATTTCATATGGTTGC...CTTATTTCAAAAAATATCCTCTCCATGCAATTAGGAGATATTTATCGACGCTGAGAAACCAAAGAGCCGAAGAACAG|GGCTGTGACCGTCTACGACAAGCCGGCATCTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCG...AGCGGGCTGGTGACGCGTCTCCACGAGCGGCCAGCCCTGCTGGTCAGCAGCACAAGCTGGACAG___AGTTTGAACAACTGACTCTTGACGGACAGAACCTTCC YFKKYPLHAIRRYLSTLRNQRAEEQ|gcdrlrqagifl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16778 SMARCC1::MAP4 ENSG00000173473.11::ENSG00000047849.22 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1617 TRUE 2926 TRUE 1114 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47772817:- chr3:47626759-47823596:- chr3:47814307:- MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47857512:- chr3:47892180-48130762:- chr3:47899002:- chr3:47746138,chr3:47746144 chr3:47867593,chr3:47867596 NA NA chr3:47787628,chr3:47787634 chr3:47909083,chr3:47909086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SWIRM-associated_domain_at_the_N-terminal(17%)|Tau_and_MAP_protein__tubulin-binding_repeat(53%) SWIRM-assoc_2(9%)|Tubulin-binding(20%) 35 25 53 551 1101 ENST00000254480.10 ENST00000395734.8 upstream downstream duplicates(8),mismatches(9) CAGCCGCAGGCCTAGCTGTTTATCGACGGAAGGATGGGGGCCCGGCCACCAAGTTTTGGGAGAGCCCGGAGACGGTGTCCCAGCTGGATTCGGTGCGGGTCTGGCTGGGCAAGCACTACAAGAAG___TATGTTCATGCGGATGCTCCTACCAATAAAACACTGGCTGGGCTGGTGGTGCAGCTTCTTCAGTTCCAGGAAGATGCCTTTGGGAAGCATGTCACCAACCCGGCCTTCACCAAACTCCCT|GTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGGTCTCCTCCAAGTGTGGGTCTAAGGCTAACATCAAGCACAAGCCTG___GTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAAGGCCCAGGCCAAGGTGGGATCCCTCGATAATGTGGGCCACCTACC AAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLP|VQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVGHL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16779 SMARCC1::MAP4 ENSG00000173473.11::ENSG00000047849.22 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1618 TRUE 2926 TRUE 1114 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47772817:- chr3:47626759-47823596:- chr3:47814307:- MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47867338:- chr3:47892180-48130762:- chr3:47908828:- chr3:47746138,chr3:47746144 chr3:47867593,chr3:47867596 NA NA chr3:47787628,chr3:47787634 chr3:47909083,chr3:47909086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SWIRM-associated_domain_at_the_N-terminal(17%)|Tau_and_MAP_protein__tubulin-binding_repeat(80%) SWIRM-assoc_2(9%)|Tubulin-binding(78%) 22 21 69 551 1228 ENST00000254480.10 ENST00000395734.8 upstream downstream duplicates(7),mismatches(15) GGATGGGGGCCCGGCCACCAAGTTTTGGGAGAGCCCGGAGACGGTGTCCCAGCTGGATTCGGTGCGGGTCTGGCTGGGCAAGCACTACAAGAAG___TATGTTCATGCGGATGCTCCTACCAATAAAACACTGGCTGGGCTGGTGGTGCAGCTTCTTCAGTTCCAGGAAGATGCCTTTGGGAAGCATGTCACCAACCCGGCCTTCACCAAACTCCCT|GTCCAGATAGTCTCCAAAAAAGTGAGCTACAGCCATATTCAGTCCAAGTGTGGTTCCAAGGACAATATTAAGCATGTCCCTGGAGGTGGTAAT___GTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGGTCTCCTCCAAGTGTGGGTCTAAGGCTAACATCAAGCACAAGCCTG___GTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAAGGCCCAGG DGGPATKFWESPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLP|VQIVSKKVSYSHIQSKCGSKDNIKHVPGGGNVQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16780 SMARCC1::MAP4 ENSG00000173473.11::ENSG00000047849.22 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2926 TRUE 1114 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47781603:- chr3:47626759-47823596:- chr3:47823093:- MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47857512:- chr3:47892180-48130762:- chr3:47899002:- chr3:47746138,chr3:47746144 chr3:47867593,chr3:47867596 NA NA chr3:47787628,chr3:47787634 chr3:47909083,chr3:47909086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SWIRM-associated_domain_at_the_N-terminal(8%)|Tau_and_MAP_protein__tubulin-binding_repeat(53%) SWIRM-assoc_2(0%)|Tubulin-binding(20%) 0 1 12 729 1101 ENST00000254480.10 ENST00000395734.8 upstream downstream mismatches(4) GGACGACGGGCTGCGACGATGGCCGCAGCGGCGGGCGGCGGCGGGCCGGGGACAGCGGTAGGCGCCACGGGCTCGGGGATTGCGGCGGCAGCCGCAGGCCTAGCTGTTTATCGACGGAAGGATGGGGGCCCGGCCACCAAGTTTTGGGAGAGCCCGGAGACGGTGTCCCAGCTGGATTCGGTGCGGGTCTGGCTGGGCAAGCACTACAAGAAG|GTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGGTCTCCTCCAAGTGTGGGTCTAAGGCTAACATCAAGCACAAGCCTG___GTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAAGGCCCAGGCCAAGGTGGGATCCCTCGATAATGTGGGCCA MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLGKHYKK|VQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16781 PRRC2B::NUP214 ENSG00000288701.1::ENSG00000126883.19 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1619 TRUE 2927 TRUE 1115 PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131467753:+ chr9:134249023-134375584:+ chr9:134343140:+ NUP214 ENSG00000126883.19 protein_coding + + chr9:131125573-131234663:+ chr9:131215212:+ chr9:134000960-134110050:+ chr9:134090599:+ chr9:131469036,chr9:131469035 chr9:131212248,chr9:131212244 NA NA chr9:134344423,chr9:134344422 chr9:134087635,chr9:134087631 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BAT2_N-terminus(100%)|Nucleoporin_Nup214_phenylalanine-glycine_(FG)_domain(100%) BAT2_N(100%)|Nup214_FG(100%) 45 27 28 486 248 ENST00000684596.1 ENST00000359428.10 downstream upstream duplicates(8),low_entropy(4),mismatches(4) GCAGGCACGAAAGGCAGGTGAGGCCCGGAAGCAGGCAGAGAAGGAAGTGCCCTGGTCTCCAAGTGCTGAGAAGGCATCTCCCCAGGAAAACGGCCCTGCTGTCCACAAAG___GCTCCCCAGAATTCCCTGCCCAAGAGACCCCCACCACATTCCCAGAAGAGGCACCCACAGTGTCCCCAGCAGTGGCACAGAGCAACAGCAGTGAGGAAGAGGCCAGAGAGGCTGGGTCCCCTGCACAGGAGTTCAAGTATCAGAAGTCCCTTCCTCCCCGATTCCAGCGCCAGCAGCAGCAACAACAGCAG|CAATCATCCTCTTCCAGTGGTAGCGTGTTTGGGTCTGGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAA___ATACCTCTAACCTATTTGGAAACAGTGGGG QARKAGEARKQAEKEVPWSPSAEKASPQENGPAVHKGSPEFPAQETPTTFPEEAPTVSPAVAQSNSSEEEAREAGSPAQEFKYQKSLPPRFQRQQQQQQQ|QSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma LUNG,BREAST,UTERUS,LIVER,UTERUS exact 134269650|134269650|134375584,134340465,134358832|134375584,134354780|134354006,134334743 FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 134090599|134098165|134010285,134050847,134103547|134010285,134103547|134103547,134090599 TRUE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,TRUE PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,In-frame,Out-of-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nucleoporin 214kDa (CAN) 1 AML, T-ALL leukaemia_lymphoma fusion translocation 16782 PRRC2B::NUP214 ENSG00000288701.1::ENSG00000126883.19 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2927 TRUE 1115 PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131455166:+ chr9:134249023-134375584:+ chr9:134330553:+ NUP214 ENSG00000126883.19 protein_coding + + chr9:131125573-131234663:+ chr9:131232284:+ chr9:134000960-134110050:+ chr9:134107671:+ chr9:131469036,chr9:131469035 chr9:131212248,chr9:131212244 NA NA chr9:134344423,chr9:134344422 chr9:134087635,chr9:134087631 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none BAT2_N-terminus(100%)| BAT2_N(100%)| 0 1 0 454 2 ENST00000684596.1 ENST00000359428.10 downstream upstream duplicates(1) GGAAGAAGTTGTGAAGGACGGCAGGCCAAAGTG|GGTTCAGCTTTGGGTCAAATAACTC___GTCTGTCCAGGGTTTTGGTGGCTGGCGAAGCTGgGGGCGTGTC...GTATGTGGGTTTTTTCAGATCACAGCCAAGAAGATTGCCCCGTTTCTGTGGCTCTGAGAAGCCAGCAGAGCCTCCATCAGCCAGAACACTGTGTCTTCAAG EEVVKDGRPKw|vqlwvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma LUNG,BREAST,UTERUS,LIVER,UTERUS exact 134269650|134269650|134375584,134340465,134358832|134375584,134354780|134354006,134334743 FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 134090599|134098165|134010285,134050847,134103547|134010285,134103547|134103547,134090599 FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,In-frame,Out-of-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nucleoporin 214kDa (CAN) 1 AML, T-ALL leukaemia_lymphoma fusion translocation 16783 CDC73::ENSG00000288950 ENSG00000134371.14::ENSG00000288950.1 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000288950 ENSG00000288950.1 lncRNA + + chr1:193482540-193546198:+ chr1:193546048:+ chr1:193451670-193515328:+ chr1:193515178:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 50 7 17 524 83 ENST00000367435.5 ENST00000691564.1 downstream upstream duplicates(9),low_entropy(4),mismatches(2) ATGGCGGACGTGCTTAGCGTCCTGCGACAGTACAACATCCAGAAGAAGGAGATTGTGGTGAAGGGAGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|GAAGAATATGAAGTCAAGGAAGACCATCCACAGAAAAGATGCTTGCCAAACTCCCAGGTTCCTGGCAGAATGAATAATGTGAATAAAATGCATGTTTAGTCCAACAGTCCTTC MADVLSVLRQYNIQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|eeyevkedhpqkrclpnsqvpgrmnnvnkmhv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 16786 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2929 TRUE 1116 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193673210:+ chr1:193442354-194167838:+ chr1:193642340:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 9 6 35 524 53 ENST00000367435.5 ENST00000656143.1 downstream upstream duplicates(3),mismappers(2) AGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|CATTCTCTCTCTTGCTGCCCTGTGAAGAGGTGCCTTCTGCCATAATT___TTACAGAGCTTTCACTCTAGCATCTGAAAAAGGAACCAACTCCTGCTAAATCTTGA...___GCTGGAAGCTTATCATGGGCCTGGATCTTGTGCTATTCAAATGTTTTCACCGATGCCTACAACTGTATTTGGCACATAGAA DEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|hslsccpvkrcllp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 16787 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2929 TRUE 1116 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193886321:+ chr1:193442354-194167838:+ chr1:193855451:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 3 2 18 524 40 ENST00000367435.5 ENST00000656143.1 downstream upstream duplicates(2) GCGGCGGCGAAGGAGGAGGAGGAAGAGGGCGAGGCGACAAGAGAAGAAGGAGGCAGGCGCGGCGGCAGCGGCGGCGCCCCGAGCCGGCGGAGGCGAGGGGGG...CATCCAGAAGAAGGAGATTGTGGTGAAGGGAGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|TTACAGAGCTTTCACTCTAGCATCTGAAAAAGGAACCAACTCCTGCTAAATCTTGAGAATTGACACATTGAAGCCTTATCTTCAGACTCTGAAAAAG___GCTGGAAGCTTATCATGGGCCTGGATCTTGTGCTATTCAAATGTTTTCACCGATGCCTACAACTGTATTTGGCACATAG IQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|lqsfhssi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 16788 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2929 TRUE 1116 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193899287:+ chr1:193442354-194167838:+ chr1:193868417:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 5 4 11 524 55 ENST00000367435.5 ENST00000656143.1 downstream upstream duplicates(1) GGGCGAGGCGACAAGAGAAGAAGGAGGCAGGCGCGGCGGCAGCGGCGGCGCCCCGAGCCGGCGGAGGCGAGGGGGGGGgAGcTGGgGGACGTGCTTAGCGTC...CATCCAGAAGAAGGAGATTGTGGTGAAGGGAGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|GCTGGAAGCTTATCATGGGCCTGGATCTTGTGCTATTCAAATGTTTTCACCGATGCCTACAACTGTATTTGGCACATAGAA___GATGCAAACAATAAACCTCAGAAC IQKKEIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|agslswawilcysnvftdaynciwhiedannkpq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 16789 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2929 TRUE 1116 CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193507926:+ chr1:193442354-194167838:+ chr1:193477056:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through medium none Paf1_complex_subunit_CDC73_N-terminal(26%)| CDC73_N(3%)| 3 3 47 524 9 ENST00000367435.5 unknown downstream upstream duplicates(5),low_entropy(2),mismatches(2),multimappers(1) AGGAGATTGTGGTGAAGGGAGACGAAGTGATCTTCGGGGAGTTCTCCTGGCCCAAGAATGTGAAGACCAACTATGTTGTTTGGGG___GACTGGAAAGGAAGGCCAACCCAGAGAGTACTACACATTGGATTCCATTTTATTTCTACTTAATAACGTGCACCTTTCTCATCCTGTTTATGTCCGACGTGCAGCT|GCTGCATGGATGTCCTTCTCAGATTGGCTGGGCTCTCATATTGGGATGCCTCCCCACAGGGATTACTACCTAATCTGGGATTACTATCTGAGCTGGGATATTCATGCCGGGTGACCATCCTTCCCAGGTgACCTCCTCCTTTTACCTAAGGCCTGATACCTTGTGCTGTATATCTCTATTACGTGGATGACCTCCTCAACCTGCTTGGACTCTGATAGACTCCTTTCAGCTAAT...ACTCTTTTCCCCGCTGAGGCATGAATAAGCTCTTAGCAAATCTGACAAATATATTAGAAACAGGGAAACTACAGACAAATCCATCATAAAAAGAAATGCAGAAATTCTAAATGAAATATTAGCAC EIVVKGDEVIFGEFSWPKNVKTNYVVWGTGKEGQPREYYTLDSILFLLNNVHLSHPVYVRRAA|aawmsfsdwlgshigmpphrdyyliwdyylswdihag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 16801 CTCF::SLC9A5 ENSG00000102974.16::ENSG00000135740.17 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1624 FALSE NA FALSE NA CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67571264:+ chr16:67596370-67673080:+ chr16:67605167:+ SLC9A5 ENSG00000135740.17 protein_coding + + chr16:67237683-67272191:+ chr16:67270738:+ chr16:67271586-67306094:+ chr16:67304641:+ chr16:67600556 chr16:67270696 NA NA chr16:67634459 chr16:67304599 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 7 15 10 474 235 ENST00000646076.1 ENST00000299798.16 downstream upstream duplicates(3),mismatches(1) AGCGGGCGCCGCGGGGGGTGTGGCGCGGAG___AATGATTACGGACCTGAAGCCAAAGAACAAGATGCGCTAGTGGACAGATTGCTGACCAGGGGCTTGAGAGCTGGGTTCTATTTTCCCTCCTCAAACTGACTTTGCAGCCACGGAGAG|GAAGCCTTGAGGTGTGCCCAAGCCCACGAATCATTCCCCCCTCCCCAACCTGTGCAGAAAAGGAGCTCCCCTGGAAGAGTGGGCAGGGGGACCTGGCAGTGTACGTGTCCTCGGAAACCACCAAGATTGTGCCTGTGGACATGCAGACGGGTTGGAACCAGAGCATCTCATCCCTGGAGAGCCTAGCGTCCCCTCCCTGTAACCAGGCCCCAATTCTGACCTGCCTGCCTCCCCATCCACGGGGCACTGAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 16802 PIGG::ZNF595 ENSG00000174227.16::ENSG00000272602.6 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1625 TRUE 2932 TRUE 1117 PIGG ENSG00000174227.16 protein_coding + + chr4:499210-540200:+ chr4:500601:+ chr4:492999-533989:+ chr4:494390:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:85731:+ chr4:53180-88096:+ chr4:85622:+ chr4:504905,chr4:504903 chr4:77017,chr4:77012 NA NA chr4:498694,chr4:498692 chr4:76909,chr4:76904 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) Phosphodiest(1%)|zf-C2H2(100%),zf-C2H2_6(100%),zf-C2HC_2(100%) 3 4 14 197 59 ENST00000453061.7 ENST00000610261.6 downstream upstream duplicates(2),mismatches(1) GCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCCGGCTCCCGTTCGTTCCTCTGCCAGAGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTG___GAGCCAGTTCTAACTGGACCACGCTGCCACCACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAGATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGTGTGAAATTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCCACCTACAGTTACTATGCCTCGAATCAAG|CTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAATACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAA AIEVLGIAVFLRGFFPAPVRSSARAEHGAEPPAPEPSAGASSNWTTLPPPLFSKVVIVLIDALRDDFVFGSKGVKFMPYTTYLVEKGASHSFVAEAKPPTVTMPRIK|lyvllsaktfhqcrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16803 PIGG::ZNF595 ENSG00000174227.16::ENSG00000272602.6 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1626 TRUE 2932 TRUE 1117 PIGG ENSG00000174227.16 protein_coding + + chr4:499210-540200:+ chr4:501170:+ chr4:492999-533989:+ chr4:494959:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:85731:+ chr4:53180-88096:+ chr4:85622:+ chr4:504905,chr4:504903 chr4:77017,chr4:77012 NA NA chr4:498694,chr4:498692 chr4:76909,chr4:76904 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) Phosphodiest(8%)|zf-C2H2(100%),zf-C2H2_6(100%),zf-C2HC_2(100%) 3 1 15 20 59 ENST00000504187.5 ENST00000610261.6 downstream upstream low_entropy(1),mismatches(1) GCGGCTACCTGGAGCCGGAAGCGCGGCTGCAGCAGGGCGAGGCTCCAGGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGCTCCGGGACTTTCGCTACCTGTTGCGTAGCGATCGAGGTGCTAGGGATCGCGGTCTTC...TTTATGCCCTACACAACTTACCTTGTGGAAAAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCCACCTACAGTTACTATGCCTCGAATCAAG___GTGTCCAGCCTACTGACAGCAGCTTTGAAGTACATAGTGCATTTCCCAAGAACCGTGGGTAAAGAAAAAA|CTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAATACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAAC FMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKVSSLLTAALKYIVHFPRTVGKEK|tICSPFSQDLSPVQGIEDSFHKLILKRYEKCGHENLQLRKGCKRVNECKVQKGVNNGVYQCLSTTQSKIFQCNTCVKVFSKFSNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16805 NCOA7::TPD52L1 ENSG00000111912.20::ENSG00000111907.21 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1628 TRUE 2933 TRUE 1118 NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125815404:+ chr6:126102307-126253180:+ chr6:126136550:+ TPD52L1 ENSG00000111907.21 protein_coding + + chr6:125119049-125264407:+ chr6:125262834:+ chr6:125440195-125585553:+ chr6:125583980:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Tumour_protein_D52_family(13%) |TPD52(0%) 3 4 5 63 130 ENST00000392477.7 ENST00000368388.6 downstream upstream mismappers(1) CCCGGGGTGAG___...ATGCGCTCCCCGGCGCCCAGCAGCAGAGGCCACCGCTCCCAGAAATGCATGCGACCGATCCCCTTCTCCCGGACCCCAGGAGCCGGCGCCCCCGCCCTGTAG___GGTTACGACTCACTGATTAAAAAGAGGGACTTTTTCAAATACTTTGCACTTTTGATTGTGTATTATGGATACCAAGGAAGAGAAGAAGGAACGGAAACAAAGTTATTTTGCTCG|ACGAAAGTAGGCGGTACGAACCCTAATGGAGGCAGTTTTGAGGAGGTCCTCAGCTCCACGGCCCATGCCAGTGCCCAG...GCGGACCAAGGAGGAGGAGCTGCAGTGCTAAGTCCAGCCAGCGTGCAGCTGCATCCAGAAACCGGCCACTACCCAGCCCATCTCTGCCTGTGCTTATCCAGATAAGAAGACCAAAATCCCGCTGGGAAAAACCCAGGCCTTGACATTGTTATTCAAATGGCCCCTCCAG...ACCATCACATTTCAGTATTCATAGATGACTGTCACATTTTAAAATGTTCCCACTTGAGCAGGTACACAACTGGTCATAATTCCTGTCTGTGTAATTCGATG MDTKEEKKERKQSYFAr|RK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16806 NCOA7::TPD52L1 ENSG00000111912.20::ENSG00000111907.21 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2933 TRUE 1118 NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125815404:+ chr6:126102307-126253180:+ chr6:126136550:+ TPD52L1 ENSG00000111907.21 protein_coding + + chr6:125119049-125264407:+ chr6:125257098:+ chr6:125440195-125585553:+ chr6:125578244:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Tumour_protein_D52_family(25%) |TPD52(13%) 1 0 5 63 43 ENST00000392477.7 ENST00000534000.6 downstream upstream none ATAAATTTGTAATGAACTTGCTCACAACATCCGCCGCCACTGTGAgTTGCAGTCATCATCCATTACCACAAAATTAG___TTGCAGGATGGCTAtTCGTATCCC...CGCTCCCAGAAATGCATGCGACCGATCCCCTTCTCCCGGACCCCAGGAGCCGGCGCCCCCGCCCTGTAG___GGTTACGACTCACTGATTAAAAAGAGGGACTTTTTCAAATACTTTGCACTTTTGATTGTGTATTATGGATACCAAGGAAGAGAAGAAGGAACGGAAACAAAGTTATTTTGCTCG|GAATTCTCCTACTTTCAAATCATTTGAGGAGAGGGTTGAG MDTKEEKKERKQSYFAr|NSPTFKSFEERV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16815 POLR1A::PTCD3 ENSG00000068654.17::ENSG00000132300.19 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POLR1A ENSG00000068654.17 protein_coding - - chr2:86020216-86106155:- chr2:86047165:- chr2:86247339-86333278:- chr2:86274288:- PTCD3 ENSG00000132300.19 protein_coding + - chr2:86106223-86142157:+ chr2:86134177:- chr2:86333346-86369280:+ chr2:86361300:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RNA_polymerase_Rpb1__domain_1(100%),RNA_polymerase_Rpb1__domain_2(100%),RNA_polymerase_Rpb1__domain_3(100%),RNA_polymerase_Rpb1__domain_4(64%)| RNA_pol_Rpb1_1(100%),RNA_pol_Rpb1_2(100%),RNA_pol_Rpb1_3(100%),RNA_pol_Rpb1_4(54%)| 1 1 4 206 12 ENST00000263857.11 unknown upstream downstream low_entropy(1) GTCCACTGCTGCTATGAGATCTATGGAGGCGAGcCCAGCGGCAAGGTTCTAACCTGCCTGGCCCGCCTCTTCACCGCCTACCTGCcGCTCTACAGAGGCTT...ACAAG___GCATGCATGCCTTTTGGCCTACACAGACAGTTCCCAGAGAACAGCCTGCAGATGATGGTGCAGTCGGGAGCCAAAGGTTCAACTGTGAACACGATGCAG|GCTTATCCCAGGATTCCAGAAACCCACCAGGATTCACAGTGGAACAAATGTAAAAGCCAATGCCTGGGCCTTGCTCCAGTGACGTGTTCATCACGGCATGTGCACTACATGGGAGCAGCCACCAGCTCCACGTGGTTAAGACGTTGTTTTATAGCACTTGGGAATTTGATATACTTTTATCACTCATTAGAGCAGTCGTGTGAAGCAGGAGGGCGGGACTAGAGCCTACTGACTTTATGATACAGTAGTCACCTAGTGAAA...ACTGGCACAGAGGAATTACACAGGCTTCCGGGTCAAAGACCTTTATTCAGATTTAGGGTCTGCCACGCCATTAGCATTTATTTTCTTTGGGTCATATCCCG KACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQ|aypripethqdsqwnkcksqclglapvtcssrhvhymgaatsstwlrrcfialgnliyfyhsleqsceaggrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16816 LRRCC1::RALYL ENSG00000133739.16::ENSG00000184672.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRCC1 ENSG00000133739.16 protein_coding + + chr8:85107215-85146080:+ chr8:85141517:+ chr8:86019450-86058315:+ chr8:86053752:+ RALYL ENSG00000184672.12 protein_coding + + chr8:84182787-84921844:+ chr8:84849980:+ chr8:85095022-85834079:+ chr8:85762215:+ chr8:85144731 chr8:84849469 NA NA chr8:86056966 chr8:85761704 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none LRR_6(100%)| 1 0 4 149 3 ENST00000360375.8 ENST00000521268.6 downstream upstream duplicates(1) TGTTTACAAGAAAAAGcTGAACACATCAAAAGATTACAAGAAAAGATCACAGAAATAGAAAAATGCACTCAAGAACAACTTGATGAAAAATCTTCACAA...ATGCAATGGAAAAACTTCATAGTATGGATGATGCCTTTAAAAGACAAGTTGATGCAATTGTTGAAGCTCATCAAGCTGAAATAGCACAGCTGGCCAATGAAAAGCAGAAGTGTATTGATTCTGCAAATTTAAAG|CGGTTATGTCTTTGACTATGATTACTACAGAGATGATTTCTACAATCG___GTTATTTGATTACCACGGGCGTGTGCCTCCACCTCCCCGTGCAGTAATTCCGCTGAAGCGTCCCAGA AMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLK|rlcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16820 POU6F2::LRP1B ENSG00000106536.21::ENSG00000168702.18 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POU6F2 ENSG00000106536.21 protein_coding + + chr7:38977909-39493095:+ chr7:39086031:+ chr7:39017509-39532694:+ chr7:39125631:+ LRP1B ENSG00000168702.18 protein_coding - - chr2:140231423-142131016:- chr2:140989657:- chr2:140988992-142888585:- chr2:141747226:- chr7:39145700,chr7:39145700,chr7:39145698,chr7:39145698 chr2:141001394,chr2:141001393,chr2:141001321,chr2:141001396 NA NA chr7:39185300,chr7:39185300,chr7:39185298,chr7:39185298 chr2:141758963,chr2:141758962,chr2:141758890,chr2:141758965 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none |Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(75%),Complement_Clr-like_EGF-like(100%),Domain_of_unknown_function_(DUF5050)(100%),EGF-like_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(89%),Low-density_lipoprotein_receptor_repeat_class_B(62%) |DUF5050(100%),EGF(100%),EGF_CA(32%),FXa_inhibition(67%),Ldl_recept_a(4%),Ldl_recept_b(51%),cEGF(100%),hEGF(100%) 3 0 1 46 5 ENST00000517348.1 ENST00000389484.8 downstream downstream mismappers(1) CTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTGGACTGGAGCTGTTCCTATGCGGCCATCTTGGCTCCTCCCTAGATAG___GATCCAATGATAGCTGGACAAGTCAGTAAGCCCTTGCTGTCAGTGCGGAGTGAAATGAATGCGGAGTTGAGAGGTGAGGACAAGGCTGCTACTTCAGACAGCGAGCTGAATGAGCCCCTGCTTGCGCCTGTGGAATCAAATGACAGCGAGGACACTCCCAGCAAGCTCTTCG|TCAATCATAGCTGTCCTGATGATCAGTTTAAATGCCAGAATAATCGCTGCATCCCCAAGAGATGGCTTTGTGATGGAGCTAATGACTGTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7157 chr2:140586626-140586685:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE LDL receptor related protein 1B 1 Yes CLL, ovarian cancer, oesophageal squamous cell carcinoma, urothelial cancer epithelial, leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift 16821 GPATCH2L::ENSG00000258807 ENSG00000089916.18::ENSG00000258807.5 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2934 TRUE 1119 GPATCH2L ENSG00000089916.18 protein_coding + + chr14:76151916-76254342:+ chr14:76195972:+ chr14:76618259-76720685:+ chr14:76662315:+ ENSG00000258807 ENSG00000258807.5 lncRNA - - chr14:87710419-87872291:- chr14:87767815:- chr14:88176763-88338635:- chr14:88234159:- NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site intron inversion high none none none 1 1 2 243 1 ENST00000261530.12 unknown downstream downstream none GGGTACCATACTCGCTTGAATCGTCTACCTGGAGCTGCAGCTCGATGCCTCAGAAAGGGGCGAAGAAGGCTGGTTGGGAAG___GAGACCAGCATAAACACTTT...AAAGAATAAAGCGTTGGCTTCTGATTTTCCTCACATTTCTGCTTGTGCACATGAG___ACAGGCAAATGTACACTGGGGACCACCATGTTCACGTGACATCAAGAGGAAGCGGAAACCAGTGGCCACAGCATCTTTGTCTAGCCCCAGTGCAG|TTGCTTTATTGTGGTATCTTCCCAAATGTTGAGAGCTTTTGCTGTGTTTTGGGTTCTTCTCATGGTGGAGTGTGATGAGACTCAATGGAAAGCCCCATTTCTCATATCTGGCTGTCCATTAACAGACAGCAGCAAGGGTTACAAAGCTGATGAGAAGCACTGAAGGCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16822 GPATCH2L::ENSG00000258807 ENSG00000089916.18::ENSG00000258807.5 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2934 TRUE 1119 GPATCH2L ENSG00000089916.18 protein_coding + + chr14:76151916-76254342:+ chr14:76195972:+ chr14:76618259-76720685:+ chr14:76662315:+ ENSG00000258807 ENSG00000258807.5 lncRNA - - chr14:87710419-87872291:- chr14:87763810:- chr14:88176763-88338635:- chr14:88230154:- NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site exon/splice-site inversion high none none none 0 1 2 243 4 ENST00000261530.12 ENST00000554305.5 downstream downstream none AAAGAATAAAGCGTTGGCTTCTGATTTTCCTCACATTTCTGCTTGTGCACATGAG___ACAGGCAAATGTACACTGGGGACCACCATGTTCACGTGACATCAAGAGGAAGCGGAAACCAGTGGCCACAGCATCTTTGTCTAGCCCCAGTGCAG|GCTTTCTCACCATGTGATGCATTCTGCTATGTTATGATACAGCAAGAAGGGCCTCACAAGATGTGACCTCTTGTTCTTGGACTTCTCAGCCTCCAGAATCATGAG___CCCCTCTTTGAGCCGAAGGACTAGAGGAACAAAAGACTCAGCCCCAAGGTTATCCG___CTGCTGCTGCCCCCGAGACAGTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16823 PJA2::PARP8 ENSG00000198961.10::ENSG00000151883.19 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PJA2 ENSG00000198961.10 protein_coding - - chr5:109334713-109409974:- chr5:109355915:- chr5:108670414-108745675:- chr5:108691616:- PARP8 ENSG00000151883.19 protein_coding + + chr5:50665899-50846519:+ chr5:50741831:+ chr5:49961733-50142353:+ chr5:50037665:+ chr5:109347829,chr5:109347831 chr5:50670619,chr5:50670617 NA NA chr5:108683530,chr5:108683532 chr5:49966453,chr5:49966451 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Poly(ADP-ribose)_polymerase_catalytic_domain(100%) |PARP(100%) 1 0 3 295 2 ENST00000361189.7 ENST00000513738.5 upstream upstream duplicates(1) AATGAATTTGCACAGCCAGCTTTCATGTTGGATGGTAACAATAACCTGGAGGATGACTCCAGTGTGAGTGAAGACTTAGATGTGGATTGGAG___CCTATTTGATGGCTTTGCAGATGGACTAGGAGTTGCTGAAGCTATTTCATATGTGGATCCTCAGTTCCTTACCTACATGGCACTAGAAGAACGCTTAGCCCAGGCTATGGAG|GTAGAATTTCATTCTTGTTGCCCAGGCCGGGTGCAATAGCGCGATCTCAGCTCACTGCAAC NEFAQPAFMLDGNNNLEDDSSVSEDLDVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAME|vefhsccpgrvq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16826 MRPS27::FCHO2 ENSG00000113048.19::ENSG00000157107.14 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MRPS27 ENSG00000113048.19 protein_coding - - chr5:72214953-72321717:- chr5:72295531:- chr5:71510780-71617544:- chr5:71591358:- FCHO2 ENSG00000157107.14 protein_coding + - chr5:72956041-73090522:+ chr5:72990841:- chr5:72251868-72386349:+ chr5:72286668:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Mitochondrial_28S_ribosomal_protein_S27(21%)| MRP-S27(24%)| 1 1 1 178 41 ENST00000694990.1 unknown upstream downstream duplicates(1) TGGCTGCCTCCATAGTGCGGCGCGGGATGCTCCTGGCGCGGCAAGTGGTTCTTCCTCAGCTCTCTCCTGCAG___GTAAAAGATACCTGCTTTCTTCAGCCTAT...GGGAAGAGATAGATCATGCAGAGTATTACCTTTACAA|CTCCTTCCTTTTTCAAACGCTCCTGTTCTACACACTTGGCATTGTAATTTTCCTTGGATTTCTGGAGGGCCTGAGTTATGCTCTGAATGGTTTGGACAGCTTCCAG...ATTTTCTAACAAGATCCAAGTGACAATTTGCTAATTTCTCTGTAGATGTTTTGAATACATCCCATACTGGTGCAAATGTTCTAAGAAAATAAAAAATATGG EEIDHAEYYLYn|sflfqtllfytlgiviflgfleglsyalngldsf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16827 ENSG00000291063::LRRC37B ENSG00000291063.1::ENSG00000185158.13 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291063 ENSG00000291063.1 lncRNA + + chr17:31008497-31093127:+ chr17:31024427:+ chr17:29335515-29420145:+ chr17:29351445:+ LRRC37B ENSG00000185158.13 protein_coding + + chr17:32007383-32053504:+ chr17:32045697:+ chr17:30334402-30380523:+ chr17:30372716:+ NA NA NA NA NA NA NA NA sense sense unknown intron exon deletion high none |LRRC37A/B_like_protein_1_C-terminal_domain(100%) |LRRC37AB_C(100%) 0 1 2 16 74 ENST00000580190.5 ENST00000581086.5 downstream upstream none CAAGAAGATCCATAAGAAACAAGGTGCTGGATTTCTCCGTTGTGTTCgTCTTTTTCCAGTGCCATCAACCACCTCAAAGACACTGGTT___ATCAGAGGTTGGATTTATGCAAACtTGGGCCAAAGGACAGTTAGAAGACaG|TAGGATCTTACCTAGCCATATGGtCTGCTGCCTC...CCAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCATACATTGTC___CTGAAGAAGCATCTGTAGGGAATCCAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16843 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1632 TRUE 2938 TRUE 1120 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 6 5 4 108 18 ENST00000582329.1 ENST00000585268.1 downstream downstream duplicates(4),mismatches(3) TGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|TCGCTCTGTCACCCAGGCTAGAGTGCAGTGACACAATCATAGtTCACTACAGCCTCAGACTCCTGGGCTCAAGAGATCCTCCCACCTTGGTCTTCCAAAGTACTAAGATTACAAGTGTGAGCCACTGCACTCAGCCCTCTGTGAGATTTTAAAAACAATTTTTACACATCTAACATGCAGATTTTGGCTTAAAAATACTATTCTTCTATAAGGAATCAGGACTCCTTGAAGAAATCACAACTTCAGAGCAGAG___GAACGAGGTCTTGCTATGTTGTCCAAACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16844 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1633 TRUE 2938 TRUE 1120 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 10 1 1 108 31 ENST00000578070.5 ENST00000583527.1 downstream downstream mismatches(1) TGGAAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAG___GATGTATGTTGTCCAATAAGGCAAGTTCCCACAG___...GTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|GAACGAGGTCTTGCTATGTTGTCCAAACTGGTCTCAAACTCCTGGGCTCAAAGTCTTCGCACCTTGGACTCCCAAAGTGTTAGGGTTACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16845 SUZ12P1::CRLF3 ENSG00000264538.8::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2939 TRUE 1121 SUZ12P1 ENSG00000264538.8 transcribed_unprocessed_pseudogene + + chr17:30731886-30776402:+ chr17:30769965:+ chr17:29058904-29103420:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 6 5 4 108 18 ENST00000578195.6 ENST00000585268.1 downstream downstream duplicates(4),mismatches(3) TGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|TCGCTCTGTCACCCAGGCTAGAGTGCAGTGACACAATCATAGtTCACTACAGCCTCAGACTCCTGGGCTCAAGAGATCCTCCCACCTTGGTCTTCCAAAGTACTAAGATTACAAGTGTGAGCCACTGCACTCAGCCCTCTGTGAGATTTTAAAAACAATTTTTACACATCTAACATGCAGATTTTGGCTTAAAAATACTATTCTTCTATAAGGAATCAGGACTCCTTGAAGAAATCACAACTTCAGAGCAGAG___GAACGAGGTCTTGCTATGTTGTCCAAACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16846 SUZ12P1::CRLF3 ENSG00000264538.8::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2939 TRUE 1121 SUZ12P1 ENSG00000264538.8 transcribed_unprocessed_pseudogene + + chr17:30731886-30776402:+ chr17:30769965:+ chr17:29058904-29103420:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 8 1 1 108 31 ENST00000578195.6 ENST00000583527.1 downstream downstream mismatches(1) TGGAAGTCCTGCTTGTGAAAGTTTGCCACAAAAAAAGAAAG___GATGTATGTTGTCCAATAAGGCAAGTTCCCACAG___...GCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|GAACGAGGTCTTGCTATGTTGTCCAAACTGGTCTCAAACTCCTGGGCTCAAAGTCTTCGCACCTTGGACTCCCAAAGTGTTAGGGTTACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16849 LRIG3::ENSG00000258231 ENSG00000139263.12::ENSG00000258231.5 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRIG3 ENSG00000139263.12 protein_coding - - chr12:58872149-58920504:- chr12:58885831:- chr12:59265931-59314285:- chr12:59279613:- ENSG00000258231 ENSG00000258231.5 lncRNA + - chr12:58544124-58813060:+ chr12:58802013:- chr12:58937907-59206842:+ chr12:59195795:- chr12:58885658,chr12:58885660,chr12:58885663 chr12:58802424,chr12:58802422,chr12:58802401 NA NA chr12:59279440,chr12:59279442,chr12:59279445 chr12:59196206,chr12:59196204,chr12:59196183 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Leucine_rich_repeat(84%)| LRR_5(91%),LRR_6(100%),LRR_8(97%)| 1 1 10 62 8 ENST00000320743.8 unknown upstream downstream duplicates(3) CTGAAGAACAATGAAATTTCCTGGACTATTGAAGACATGAATGGTGCTTTCTCTGGGCTTGACAAACTGAGGCGACT___GATACTCCAAGGAAATCGGATCCGaTCTATTACTAAAAAAGCCTTCACTGGTTTGGATGCATTGGAGCATCT|CTTTAGGTTATGCTGGGCCATGCTGTTATATACCTTTCAACATTCC...TTCTGCAAGGGCAGGAAATAACTTGTTCATGGGCTTATCTCTGCACACAGCACAATGCCTAGCACCTGACAGGTGCTTAATACATATTTGAAGAATAAAAG LKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHl|frlcwamllytfqh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE leucine-rich repeats and immunoglobulin-like domains 3 1 NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16850 EIF3B::MAD1L1 ENSG00000106263.19::ENSG00000002822.16 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3B ENSG00000106263.19 protein_coding + + chr7:2354086-2380745:+ chr7:2355420:+ chr7:2393721-2420380:+ chr7:2395055:+ MAD1L1 ENSG00000002822.16 protein_coding - + chr7:1815793-2233243:- chr7:2093634:+ chr7:1855429-2272878:- chr7:2133269:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 4 2 3 3304 4 ENST00000360876.9 unknown downstream upstream none CTGAGCCCCCTGTCCCGGCACAGGGCGAGGCCCCAGGAGAGCAGGCTCGGGACGAGCGCTCCGACAGCCGGGCCCAGGCGGTGTCCGAGGACGCGGGAGGAAACGAGGGCAGAGCGGCCGAGGCCGAACCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGACGTGAGCGAGGAAG|GTGTGGGAACACAGCTCACAGAATGTGGGGAAAGCAGATCCGGCGAACCTAGAAGAGGAAGTGGCCCCCAAGACAGCTCCGTCTCATCtACCCCTATGAGACACACTGGCACTGGCTGGGCAACGCACGGGAGAGTCCACAGCTGCGCTCCATCAGCCAGAGGAGCACGGAACGCGGAACCaAG EPPVPAQGEAPGEQARDERSDSRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEE|gvgtqltecgesrsgeprrgsgpqdssvsstpmrhtgtgwathgrvhscapsargarnaep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16851 EIF3B::ENSG00000286192 ENSG00000106263.19::ENSG00000286192.1 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3B ENSG00000106263.19 protein_coding + + chr7:2354086-2380745:+ chr7:2355420:+ chr7:2393721-2420380:+ chr7:2395055:+ ENSG00000286192 ENSG00000286192.1 protein_coding - + chr7:1815804-2242215:- chr7:2093634:+ chr7:1855440-2281850:- chr7:2133269:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 4 2 3 3304 4 ENST00000360876.9 unknown downstream upstream none CTGAGCCCCCTGTCCCGGCACAGGGCGAGGCCCCAGGAGAGCAGGCTCGGGACGAGCGCTCCGACAGCCGGGCCCAGGCGGTGTCCGAGGACGCGGGAGGAAACGAGGGCAGAGCGGCCGAGGCCGAACCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGACGTGAGCGAGGAAG|GTGTGGGAACACAGCTCACAGAATGTGGGGAAAGCAGATCCGGCGAACCTAGAAGAGGAAGTGGCCCCCAAGACAGCTCCGTCTCATCtACCCCTATGAGACACACTGGCACTGGCTGGGCAACGCACGGGAGAGTCCACAGCTGCGCTCCATCAGCCAGAGGAGCACGGAACGCGGAACCaAG EPPVPAQGEAPGEQARDERSDSRAQAVSEDAGGNEGRAAEAEPRALENGDADEPSFSDPEDFVDDVSEE|gvgtqltecgesrsgeprrgsgpqdssvsstpmrhtgtgwathgrvhscapsargarnaep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16853 PHRF1::RASSF7 ENSG00000070047.13::ENSG00000099849.15 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:601701:+ chr11:576470-612222:+ chr11:601701:+ RASSF7 ENSG00000099849.15 protein_coding + + chr11:560404-564025:+ chr11:561762:+ chr11:560404-564025:+ chr11:561762:+ chr11:602613,chr11:602611 chr11:561192,chr11:561187 NA NA chr11:602613,chr11:602611 chr11:561192,chr11:561187 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none PHD-finger(100%),Ring_finger_domain(100%)|Ras_association_(RalGDS/AF-6)_domain(100%) PHD(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_2(100%),zf-RING_UBOX(100%)|RA(100%) 1 3 4 485 252 ENST00000264555.10 ENST00000431809.5 downstream upstream duplicates(1),mismatches(7) CCGTGAGTGAGGAGGAGGTCTCCCTGCTCTTGGCTGATGTGGTGCCCACCACCAGCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCCAGGACAC...CACACACCAGG?CGCCTCGGGTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTGGCCTGAGCACTGCCGTGTATCAGCGCCCCCTGACGCCGCGCACTCCCGCCCGACGGAAGAGGAAGACAA___GAAGACGGAAGAAAGTGCCGGGAAGAAAGAAAACCCCGTCCGGACCATCCGCAAAAAGTAAGAGCTCAGCGACAAGATCTAAGAAACGCCAACATCGAGTGAAGAAGAGAAGAGGGAAGAAGGTAAAG|GACAGGCATGTTGTTGGGACTGGCGGCCATGGAGCTGAAGGTGTGGGTGGATGGCATCCAGCGTGTGG...CTGTGGGGTCTCAGAGCAGACCACCTGCCAGGAAGTGGTCATCGCACTAGCCCAAGCAATAG___GCCAGACTGGCCGCTTTGTGCTTGTGCAGCGGCTTCGGGAGAAGGAGCGGCAGTTGCTGCCACAAGAGTGTCCAGTGGGCGCCCAGGCCACCTG HTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTPARRKRKTRRRKKVPGRKKTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVK|drhvvgtgghgaegvggwhpac NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16856 BORCS5::DUSP16 ENSG00000165714.11::ENSG00000111266.9 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BORCS5 ENSG00000165714.11 protein_coding + + chr12:12357078-12471233:+ chr12:12361349:+ chr12:12510012-12624167:+ chr12:12514283:+ DUSP16 ENSG00000111266.9 protein_coding - + chr12:12473282-12562863:- chr12:12554295:+ chr12:12626216-12715797:- chr12:12707229:+ chr12:12382787,chr12:12382786 chr12:12536968,chr12:12536964 NA NA chr12:12535721,chr12:12535720 chr12:12689902,chr12:12689898 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Tumour_suppressor_protein(5%)| LOH1CR12(3%)| 1 0 5 70 2 ENST00000314565.9 unknown downstream upstream duplicates(1) CAACGATCTGAACTCCTCAG___TGACTCCTTCACCAGCCAAGCATAGAGCCAAGATGGATGATATTGTGGTTGTAGCTCAGGGCTCCCAGGCCTCACGGAACGTCAGCAACGATCCCGATGTCATCAAGTTGCAAGAGATTCCAACCTTCCAGCCCCTTTTGAAAG|AGACAGAGTCTCACCATGCTACCTAAGCTGGTCTCAAACTCCTGACCTCAAGCGATCCTCCCACCTCAGCCTCCCAAAGTACTGGATCATAAGAATGAACCCTCATACCCAACCCAACAACACAATTTTATTGCATTTAATTTCTTACCCTACAGTTATAATTGGTTATATATTTTAAATCATTATTAGGGACATTTCCA NDLNSSVTPSPAKHRAKMDDIVVVAQGSQASRNVSNDPDVIKLQEIPTFQPLLK|eteshhat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16874 KLC1::NSUN6 ENSG00000126214.22::ENSG00000241058.4 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLC1 ENSG00000126214.22 protein_coding + + chr14:103561896-103714249:+ chr14:103687211:+ chr14:104028233-104180586:+ chr14:104153548:+ NSUN6 ENSG00000241058.4 protein_coding - + chr10:18545561-18659285:- chr10:18581957:+ chr10:18834490-18948214:- chr10:18870886:+ chr14:103696460 chr10:18566667 NA NA chr14:104162797 chr10:18855596 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Tetratricopeptide_repeat(100%)| DUF2315(100%),PPR(100%),TPR_1(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_7(100%),TPR_8(100%),TPR_MalT(100%)| 1 0 2 322 6 ENST00000334553.11 unknown downstream upstream none TTACAGACGTCAAGGCAAATTTGAAGCTGCAGAAACGTTAGAAGAAGCTGCTATGAGGTCTCGTAAACAG___GGTCTTGACAATGTTCACAAACAGAGGGTGG...GCCAAAGAACCCCGG|GAGATCCAAGAACCCTCTCCTGGGGTCTGGATCTGGACCCCTTTCCAGTAACATAATTACTGGAGTTGTGTGCATTCTTGCTGAGGCGTTCTTCCCTTACCAGCCGAAAGTCCCTAGGAGGTCATATACCAGTTAAACTTCCAAGACCTTGCCTTCGTG PKNPg|rsknpllgsgsgplssniitgvvcilaeaffpyqpkvprrsyts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16875 AARS1::VAC14 ENSG00000090861.17::ENSG00000103043.15 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AARS1 ENSG00000090861.17 protein_coding - - chr16:70251983-70289707:- chr16:70264958:- chr16:70285886-70323610:- chr16:70298861:- VAC14 ENSG00000103043.15 protein_coding - + chr16:70687439-70801160:- chr16:70717530:+ chr16:70721342-70835063:- chr16:70751433:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none tRNA_synthetases_class_II_(A)(83%)| tRNA-synt_2c(75%)| 1 0 2 1370 6 ENST00000674963.1 unknown upstream upstream none GCCGAGCTGTCCGATACGCCCATGAAAAGCTCAATGCCAGCAGGGGCTTCTTTGCTACGTTAGTGGATGTTGTCGTCCAGTCCCTG___GGAGATGCATTTCCT...GGGCACGGGGTCTGGAGGTCACAGATGATTCCCCAAAGTACAATTACCATTTGGACTCCAGTGGTAGCTATG|GGTGAGAATTGGTTTTCTGCCATGTGCCG ARGLEVTDDSPKYNYHLDSSGSY|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16885 NFASC::ADAMTS9-AS2 ENSG00000163531.17::ENSG00000241684.8 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NFASC ENSG00000163531.17 protein_coding + + chr1:204828651-205022822:+ chr1:205000030:+ chr1:204797779-204991950:+ chr1:204969158:+ ADAMTS9-AS2 ENSG00000241684.8 lncRNA + + chr3:64684909-65053439:+ chr3:65000950:+ chr3:64670585-65039114:+ chr3:64986625:+ NA NA NA NA NA NA NA NA sense sense unknown exon intron translocation medium none Fibronectin_type_III_domain(82%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),fn3(87%),ig(100%)| 1 1 0 86 1 ENST00000492085.1 unknown downstream upstream none AAAATATACAGCAGCCACACTTGTAAAGTCTTTGAAATACGAGGCTTCATGCAAGTACTCCACTATTAAATCTTTGCTGGAAAATGGGGTAACCAGACTGCTGGGACTCTTGCAAAATGATTACGTTTGAAGATTAGTGCCATTC|TCTGGCAATCATTAAAAAGTCAGGAAACAACAGgTGCTGGAgAGGATGcGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16902 ZFHX3::ZFHX3-AS1 ENSG00000140836.17::ENSG00000259768.8 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- ZFHX3-AS1 ENSG00000259768.8 lncRNA + - chr16:72665123-72828293:+ chr16:72730300:- chr16:72699022-72862192:+ chr16:72764199:- chr16:72949947,chr16:72949949 chr16:72738573,chr16:72738572 NA NA chr16:72983846,chr16:72983848 chr16:72772472,chr16:72772471 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Zinc_finger__C2H2_type(50%)| zf-C2H2(50%),zf-met(100%)| 2 1 3 44 10 ENST00000641206.2 unknown upstream downstream duplicates(1),mismappers(1) CCAGTGCAAGCTCTGCCGCTACAACACCCAGCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACGTGCAGAAGTACCAGCTGGTGGCCCACATCAAGGAGGGCGGCAAGGCCAACGAGTGGAGGCTCAAGTGTGTGGCCATCGGCAACCCCGTG...TGACTACTACACCAACAGCCTGGAGAAGCTGCGGCTGCACACGGTCAACTCCAGGCACGAGGCCAGCCTGAAGTTGTACAAG|AGAAGAAAACCAAGACACAGTTCAAGTCACTTGTCAAAGGACACGGTATGTTTCAGCACTGAGGTTAGTACCCCGGGACT...TGCTTACAATTTTCTCTTTTCCTGCTATACGCTTCTCCCAgATTTTCCTATCTATATCCATCGAGATCTGAAATGCCACCTCTTCCATGATGCTCACCCAGAGACCTTGTCGATTCCACTGTATACATTTATCTGCTATAACACTGTATTTTCTCTTTTTTTTTTTTTGTTTTGGACCGCTGAACTTTTCATTGGCC DYYTNSLEKLRLHTVNSRHEASLKLYK|rrkprhssshlskdtvcfstevstpg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 16947 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1634 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1267992:- chr1:1189289-1209244:- chr1:1203372:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Ubiquitin-conjugating_enzyme(100%) |UQ_con(100%) 301 303 300 5138 2654 ENST00000372771.5 ENST00000349431.11 downstream downstream duplicates(254),low_entropy(10),mismatches(3) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGT...CGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|ATGAGCAGCACCAGCAGTAAGAGGGCTCCGACCACGGCAACCCAGAGGCTGAAGCAGGACTACCTTCGCATTAAGAAAGACCCGGTGCCTTACATCTGTGCCGAGCCCCTCCCTTCGAATATTCTCGAGTG___GCACTATGTCGTCCGAGGCCCAGAGATGACCCCTTATGAAG___GTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAG___GCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACC RPCLWQLETELREQEVSEVSSLNYCRSFCQ|MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16948 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1635 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1263386:- chr1:1189289-1209244:- chr1:1198766:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Ubiquitin-conjugating_enzyme(70%) |UQ_con(58%) 146 300 300 5138 5505 ENST00000372771.5 ENST00000349431.11 downstream downstream duplicates(222),mismatches(10) GAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GCACTATGTCGTCCGAGGCCCAGAGATGACCCCTTATGAAG___GTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAG___GCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACG___AAAAGACAACTGGCAGTGCAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|alcrprprddpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16949 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1636 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1257310:- chr1:1189289-1209244:- chr1:1192690:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Ubiquitin-conjugating_enzyme(59%) |UQ_con(2%) 107 245 300 5138 6709 ENST00000372771.5 ENST00000464036.5 downstream downstream duplicates(198),mismatches(7) GAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAG___GCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACG___AAAAGACAACTGGCAGTGCAGAGTTTAGCATTTAATTTGAAAGATAAAGTCTTTTGTGAATTATTTCCTGAAGTCGTGGA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VAIIMEN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16950 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1257130:- chr1:1189289-1209244:- chr1:1192510:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Ubiquitin-conjugating_enzyme(29%) |UQ_con(0%) 26 44 300 5138 5601 ENST00000372771.5 ENST00000349431.11 downstream downstream duplicates(66),mismatches(1) GGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACG___AAAAGACAACTGGCAGTGCAGAGTTTAGCATTTAATTTGAAAGATAAAGTCTTTTGTGAATTATTTCCTGAAGTCGTGGAG___GAGATTAAACAAAAACAGAAA ADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|avsfyhgfppghvepglvclhhpdwapelhggegphpgqyrdvglhekttgsaefsi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16951 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1255487:- chr1:1189289-1209244:- chr1:1190867:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 1 39 5138 5626 ENST00000372771.5 ENST00000349431.11 downstream downstream duplicates(2),mismatches(8) AAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAGATTAAACAAAAACAGAAAGCACAAGACGAACTCAGTAGCAGACCCCAGACTCTCCCCTTGCCAGACGTGGTTCCAGACGGGGAGACGCACCTCGTCCAGAACGGGATTCAGCTGCTCAACGGGCATGCGCCGGGGGCCGTCCCAAACCTCGCAGGGCTCCAGCAGGCCAACCGGCACCACGGACTCCTGGGTGGCGCCCTGGCGAACTTGTTTGTGATAGTTGGGTTTGCAGCCTTTGCTT MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|EIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16960 TRIT1::EP400 ENSG00000043514.17::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2956 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132076516:+ chr12:132434487-132565005:+ chr12:132561061:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none IPP_transferase(0%)| AAA_33(0%),IPPT(0%),IPT(0%)| 1 0 0 7489 5010 ENST00000316891.10 ENST00000389561.7 upstream upstream none CACGAGCAGTTCCCGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCG...GCTGACTCCATGCAG|GTTGCAAAACTTCCTCAAGTTGTTCAACAGCAAACACCCGTGGCCAGCATCCAGCAAGTTGCCTCTGCTTCCCAGCAG___GCTTCTCC ADSMQ|VAKLPQVVQQQTPVASIQQVASASQQAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16961 TCF12::CGNL1 ENSG00000140262.18::ENSG00000128849.11 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:56921098:+ chr15:57210821-57591479:+ chr15:57213296:+ CGNL1 ENSG00000128849.11 protein_coding + + chr15:57375967-57550717:+ chr15:57437985:+ chr15:57668165-57842915:+ chr15:57730183:+ chr15:57042671,chr15:57042668 chr15:57392809,chr15:57392803 NA NA chr15:57334869,chr15:57334866 chr15:57685007,chr15:57685001 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Myosin_tail(100%) |Myosin_tail_1(100%) 56 33 117 396 225 ENST00000267811.9 ENST00000281282.6 downstream upstream duplicates(45),low_entropy(1),mismappers(3),mismatches(19),multimappers(3) AGTGAACTTTAATCGGGGTGGTTGGATGCGGAGACGGGGCGGCAG___GACCTGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCG___ATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAG|CTGGAACAGTGAACCATGGAGCTGTATTTCGGTGAATATCAACATGTGCAGCAGGAATATGGGGTCCATCTGAGACTCGCAAGTGATGATACCCAAAAATCAAGGAGTTCCCAGAACTCCAAGGCAGGCTCCTACGGTGTCAGTATTCGGGTCCAGGGAATTGATGGTCACCCCTATATTGTCCTGAATAACACAGAACGGTGCCTAGCAGGCACATCGTTTTCTGAAAATGGGCCACCCTTTCCACCTCCAGTGATAAATAACCTGCCTCTACATTCC MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGS|agtvnhgavfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 16963 TUT1::SZT2 ENSG00000149016.16::ENSG00000198198.17 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1641 FALSE NA FALSE NA TUT1 ENSG00000149016.16 protein_coding - - chr11:62575045-62591637:- chr11:62589031:- chr11:62342517-62359109:- chr11:62356503:- SZT2 ENSG00000198198.17 protein_coding + + chr1:43389882-43454247:+ chr1:43403177:+ chr1:43855553-43919918:+ chr1:43868848:+ chr11:62587377,chr11:62587379 chr1:43394083,chr1:43394081 NA NA chr11:62354849,chr11:62354851 chr1:43859754,chr1:43859752 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(54%),Zinc-finger_of_C2H2_type(100%)| RRM_1(1%),zf-met(100%)|AP_endonuc_2(100%) 17 6 34 340 109 ENST00000308436.11 ENST00000562955.2 upstream upstream duplicates(17),mismatches(3) GTCGCTATGGCGGCGGTGGATTCGGATGTCGAATCGCTGCCGCGTGGGGGGTTCCGCTGCTGCCTCTGCCACGTTACTACAGCCAACC___GACCCAGCCTTGATGCCCACTTGGGAGGCAGAAAGCACCGGCACCTGGTAGAACTACGAGCTGCGAGAAAGGCCCAGGGACTTCGAAGTGTGTTTGTCAGTGGCTTTCCCAGGGATGTGGATTCTGCTCAGCTCTCTGAGTACTTCCTAGCATTTGGACCTGTGGCCAGTGTTGTCATGGACAAGGACAAG|GTGGAAGAAGCTGGGCAGGTGTTCCTGTTAATGAAAAAGGATTATCGAATCTCCCGAAATGTTCGCCTGGCTTGGTTCCTCAGTCATCTGCACCAAACTGTGCAGGCCACACCCCAGGAGATGCTG___CTTCAGTCTGAACAGGAATTGGAAGTCCTCAGTGTCCTGCCCCCTGGGTGGCAGCCAGATGAACCAGTGGTCCCAAGGCCATTCCTCC VAMAAVDSDVESLPRGGFRCCLCHVTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDK|VEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQATPQEMLLQSEQELEVLSVLPPGWQPDEPVVPRPFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6735 chr1:43448539-43448611:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16964 ENSG00000255508::SZT2 ENSG00000255508.7::ENSG00000198198.17 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000255508 ENSG00000255508.7 protein_coding - - chr11:62559603-62591531:- chr11:62589031:- chr11:62327075-62359003:- chr11:62356503:- SZT2 ENSG00000198198.17 protein_coding + + chr1:43389882-43454247:+ chr1:43403177:+ chr1:43855553-43919918:+ chr1:43868848:+ chr11:62587377,chr11:62587379 chr1:43394083,chr1:43394081 NA NA chr11:62354849,chr11:62354851 chr1:43859754,chr1:43859752 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none RRM_1(1%),zf-met(100%)|AP_endonuc_2(100%) 17 6 34 340 109 ENST00000496634.2 ENST00000562955.2 upstream upstream duplicates(17),mismatches(3) GTCGCTATGGCGGCGGTGGATTCGGATGTCGAATCGCTGCCGCGTGGGGGGTTCCGCTGCTGCCTCTGCCACGTTACTACAGCCAACC___GACCCAGCCTTGATGCCCACTTGGGAGGCAGAAAGCACCGGCACCTGGTAGAACTACGAGCTGCGAGAAAGGCCCAGGGACTTCGAAGTGTGTTTGTCAGTGGCTTTCCCAGGGATGTGGATTCTGCTCAGCTCTCTGAGTACTTCCTAGCATTTGGACCTGTGGCCAGTGTTGTCATGGACAAGGACAAG|GTGGAAGAAGCTGGGCAGGTGTTCCTGTTAATGAAAAAGGATTATCGAATCTCCCGAAATGTTCGCCTGGCTTGGTTCCTCAGTCATCTGCACCAAACTGTGCAGGCCACACCCCAGGAGATGCTG___CTTCAGTCTGAACAGGAATTGGAAGTCCTCAGTGTCCTGCCCCCTGGGTGGCAGCCAGATGAACCAGTGGTCCCAAGGCCATTCCTCC MAAVDSDVESLPRGGFRCCLCHVTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDK|VEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQATPQEMLLQSEQELEVLSVLPPGWQPDEPVVPRPFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6735 chr1:43448539-43448611:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16965 KMT5B::CATSPER1 ENSG00000110066.16::ENSG00000175294.6 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2957 TRUE 1123 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68189917:- chr11:67922330-67981319:- chr11:67957384:- CATSPER1 ENSG00000175294.6 protein_coding - - chr11:66016752-66026479:- chr11:66018902:- chr11:65784223-65793950:- chr11:65786373:- chr11:68185866,chr11:68185869 chr11:66019901,chr11:66019901 NA NA chr11:67953333,chr11:67953336 chr11:65787372,chr11:65787372 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 11 10 23 476 41 ENST00000304363.9 ENST00000529244.1 upstream downstream duplicates(9),mismatches(1) GAGAGAACATTGAAAGTATTCTCTAAGCTATTTGAAGAGAGTGACTAAATGCACCTGGGTCAGGCTGTCTGTGGGTATGAAGTGGTTGGGAGAATCCAAGAACATGGTGGTGAATGGCAGGAGAAATGGAGGCAAGTTGTCTAATGACCATCAGCAGAATCAATCAAAATTACAGCACACGGGGAAGGACACCCTGAAGGCTGGCAAAAATGCAGTCGAGAGGAGGTCGAACAGAT|AGCCCAAAGAGGTGGCGAGTGAAGGCACCATGCTGAAGCGGCTCATCGAGAAAAAGTTTGGGACCATGACTGAGAAGTGAGGAGACAGGAAGGGAGCGAGGCCTGGGGTCTGAGG___GCAGCAGGAGCTCCTGTTCCATTACCTGCAGCTGGTGGCAAGCGTGGAGCAGGAGCAGCAGAAGTTCCGCTCCCAGGCAGCCGTCATCGATGAGATTGTGGACACCACATTTGAG___GCTGGAGAAGAGGACTTCAGGAA MKWLGESKNMVVNGRRNGGKLSNDHQQNQSKLQHTGKDTLKAGKNAVERRSNR|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16966 KMT5B::CATSPER1 ENSG00000110066.16::ENSG00000175294.6 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2957 TRUE 1123 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68213477:- chr11:67922330-67981319:- chr11:67980944:- CATSPER1 ENSG00000175294.6 protein_coding - - chr11:66016752-66026479:- chr11:66018902:- chr11:65784223-65793950:- chr11:65786373:- chr11:68185866,chr11:68185869 chr11:66019901,chr11:66019901 NA NA chr11:67953333,chr11:67953336 chr11:65787372,chr11:65787372 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 1 3 9 101 41 ENST00000524672.3 ENST00000529244.1 upstream downstream duplicates(2) GCGGCAGGGCAGCGGGGCGATGAGGTGAGGACGCCCGGGAACCGGAGGCGGCACCGCGCGGCGCACGGACCTGGGACGCGGAGTCCTGAAGCCGGCGGACGGTTTTCGTACGGGCGGCCGTGCGCGAGGCGAG|AGCCCAAAGAGGTGGCGAGTGAAGGCACCATGCTGAAGCGGCTCATCGAGAAAAAGTTTGGGACCATGACTGAGAAGTGAGGAGACAGGAAGGGAGCGAGGCCTGGGGTCTGAGG___GCAGCAGGAGCTCCTGTTCCATTACCTGCAGCTGGTGGCAAGCGTGGAGCAGGAGCAGCAGAAGTTCCGCTCCCAGGCAGCCGTCATCGATGAGAT...CCCCTGGCAGTCTGCCCACCTGGGTGCACTGGGACGGGTCCCCAGATCTGCTGGAATGATTGTCCGGGCCCTGCAGAGCAGGGGCCCCAACAGAGTTTTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16967 KMT5B::CATSPER1 ENSG00000110066.16::ENSG00000175294.6 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2957 TRUE 1123 KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68213138:- chr11:67922330-67981319:- chr11:67980605:- CATSPER1 ENSG00000175294.6 protein_coding - - chr11:66016752-66026479:- chr11:66018902:- chr11:65784223-65793950:- chr11:65786373:- chr11:68185866,chr11:68185869 chr11:66019901,chr11:66019901 NA NA chr11:67953333,chr11:67953336 chr11:65787372,chr11:65787372 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 0 3 9 21 41 ENST00000304363.9 ENST00000529244.1 upstream downstream duplicates(2) AGCGGGGCCTGGGACGCGCCCCGAGGAGGAGCGGGGCGGCGCAGGCG|AGCCCAAAGAGGTGGCGAGTGAAGGCACCATGCTGAAGCGGCTCATCGAGAAAAAGTTTGGGACCATGACTGAGAAGTGAGGAGACAGGAAGGGAGCGAGGCCTGGGGTCTGAGG___GCAGCAGGAGCTCCTGTTCCATTACCTGCAGCTGGTGGCAAGCGTGGAGCAGGAGCAGCAGAAGTTCCGCTCCCAGGCAGCCGTCATCGATGAGATTGTGGACACCACATTTGAG___GCTGGAGAAGAGGACTTCAGGAATTGACCCCAGGAGGACACCAGATACAGACTTCAGCCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16969 EBF4::PDYN-AS1 ENSG00000088881.22::ENSG00000233896.2 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2958 TRUE 1124 EBF4 ENSG00000088881.22 protein_coding + + chr20:2692780-2760108:+ chr20:2693782:+ chr20:2673426-2740754:+ chr20:2674428:+ PDYN-AS1 ENSG00000233896.2 lncRNA + + chr20:1947246-2030028:+ chr20:2026512:+ chr20:1927892-2010674:+ chr20:2007158:+ chr20:2703463,chr20:2703464 chr20:2010151,chr20:2010156 NA NA chr20:2684109,chr20:2684110 chr20:1990797,chr20:1990802 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Transcription_factor_COE1_DNA-binding_domain(10%)| COE1_DBD(0%)| 1 14 5 57 40 ENST00000497450.5 ENST00000651021.1 downstream upstream duplicates(2) CCGGGCTGCTGCTGCTGCTGCTCCAG___GACGCTCTGCCCCGCAGCGGGCTGAACCTGAAGGAGGAGCCGCTGCTGCCCGCCGGCCTGGGCTCAGTGCGCTCCTGGATGCAGGGCGCGGGCATCCTGGACGCCAGCACCGCGGCGCAGAG|GTCTTTCATCACCGCCATTTGATGAGTCCCAAGTTCTTGTCCTGTGTCCAGGAAGAATGAG___GAAAACACACTCTTCTGAATGGAGCCAGAAGACATAGAGCCCTGGTGCCAGTGATTgCAATTTGGTGGCCACAAAGGGAGATCCTGTTGCTCACTGAGGATTAGCCCCCTCCCCACCGAGGGAGCAGAGGAGAGAAATACCTAAAGGGAGACATCATGGTCACATTGCTGATGGATTCATCTTCATTTGAAGCTGGCCCTACCTCTCAGCTTTTTA MQGAGILDASTAAQr|sfitai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16970 EBF4::PDYN-AS1 ENSG00000088881.22::ENSG00000233896.2 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2958 TRUE 1124 EBF4 ENSG00000088881.22 protein_coding + + chr20:2692780-2760108:+ chr20:2693782:+ chr20:2673426-2740754:+ chr20:2674428:+ PDYN-AS1 ENSG00000233896.2 lncRNA + + chr20:1947246-2030028:+ chr20:2028600:+ chr20:1927892-2010674:+ chr20:2009246:+ chr20:2703463,chr20:2703464 chr20:2010151,chr20:2010156 NA NA chr20:2684109,chr20:2684110 chr20:1990797,chr20:1990802 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Transcription_factor_COE1_DNA-binding_domain(10%)| COE1_DBD(0%)| 0 2 5 57 49 ENST00000497450.5 ENST00000651021.1 downstream upstream none GCCGGGCTGCTGCTGCTGCTGCTCCAG___GACGCTCTGCCCCGCAGCGGGCTGAACCTGAAGGAGGAGCCGCTGCTGCCCGCCGGCCTGGGCTCAGTGCGCTCCTGGATGCAGGGCGCGGGCATCCTGGACGCCAGCACCGCGGCGCAGAG|GAAAACACACTCTTCTGAATGGAGCCAGAAGACATAGAGCCCTGGTGCCAGTGATTACAATTTGGTGGCCACAAAGGGAGATCCTGTTGCTCACTGAGGATTAGCCCCCTCCCCACCGAGGGAGCAGAGGAGAGAAATACCTAAAGGGAGACATCATGGTCACATTGCTGATGGATTCATCTTCATTTGAAGCTGGCCCTACCTCTCAGCTTTTTAATTATGTGAGTCAATAAAT MQGAGILDASTAAQr|kthssewsqkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16982 ZNF382::UBE4B ENSG00000161298.19::ENSG00000130939.20 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF382 ENSG00000161298.19 protein_coding + + chr19:36604817-36634114:+ chr19:36610742:+ chr19:37095719-37125016:+ chr19:37101644:+ UBE4B ENSG00000130939.20 protein_coding + + chr1:10032832-10181239:+ chr1:10072028:+ chr1:10092890-10241297:+ chr1:10132086:+ chr19:36613223,chr19:36613219 chr1:10056865,chr1:10056858 NA NA chr19:37104125,chr19:37104121 chr1:10116923,chr1:10116916 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none KRAB_box(100%)|U-box_domain(100%),Ubiquitin_elongating_factor_core(100%) KRAB(100%)|U-box(100%),Ufd2P_core(100%) 2 2 2 11 120 ENST00000292928.7 ENST00000672724.1 downstream upstream duplicates(1) CCTGCTCAGAAGGCGCTTTACAGGGATGTGATGTTGGAAAACTATTGCCACTTCGTATCTGTGG___GGTTTCACATGGCTAAGCCTGATATGATCCGCAAGTTGGAACAAGGAGAAGAGCTATGGACACAGAGAATTTTTCCAAGTTACAGCTACCTAG|ATTCGACGGAGGCGCCTTGCACGACTTGCTGGTGGACAGACCTCTCAGCCAACCACCCCACTCACCTCTCCCCAGAGGGAGAACCCTCCGGGGCCTCCCATAGCGGCATCAGCCCCAGGACCCTCTCAGAGTCTTGGTCTCAATGTCCACAACATGACCCCAGCTACCTCCCCAATAGGTGCATCAG___GAGTAGCC PAQKALYRDVMLENYCHFVSVGFHMAKPDMIRKLEQGEELWTQRIFPSYSYL|dsteapcttcwwtdlsanhpthlspegepsgashsgisprtlseswsqcpqhdpsylpnrcirss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16983 ENSG00000284697::DDX47 ENSG00000284697.1::ENSG00000213782.7 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284697 ENSG00000284697.1 lncRNA + + chr12:8082269-8138548:+ chr12:8104062:+ chr12:8234865-8291144:+ chr12:8256658:+ DDX47 ENSG00000213782.7 protein_coding + + chr12:12813316-12829981:+ chr12:12826000:+ chr12:12966250-12982915:+ chr12:12978934:+ chr12:8104225,chr12:8104167,chr12:8104168,chr12:8104223 chr12:12825740,chr12:12825740,chr12:12825740,chr12:12825735 NA NA chr12:8256821,chr12:8256763,chr12:8256764,chr12:8256819 chr12:12978674,chr12:12978674,chr12:12978674,chr12:12978669 NA NA sense sense unknown intron CDS/splice-site deletion high none |Helicase_conserved_C-terminal_domain(10%) |Helicase_C(1%) 2 1 2 4 313 unknown ENST00000352940.8 downstream upstream none CCCGCTTTTGCCTTCCTGTAGGAGGACTTAAGAGACTTCCTGAACTGtGTCTTTTCTTATCATTACTGAGATTTTGAGGCACTGCTATTGACAGAG___TACTTCCCATACACCTTTCTAGATAGTACATGCTCATGAAGTACTTGTGGAATTAACAGTGATTTCAGTGAGGAGGGACTAGAAGTTG|GATTACATCCATCGAGTAGGTCGAACAGCTAGAGCTGGGCGCTCCGGAAAGGCTATTACTTTTGTCACACA___GTATGATGTGGAACTCTTCCAGCGCATAGAACACTTAATTGGGAAGAAACTACCAGGTTTTCC...TGCTGACAGAACGCGTCGCTGAAGCCCAAAGGTTTGCCCGAATG___GAGTTAAGGGAGCATGGAGAAAAGAAGAAACGCTCGCGAGAGGATGCTGGAGATAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16984 ENSG00000284697::APOLD1 ENSG00000284697.1::ENSG00000178878.13 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284697 ENSG00000284697.1 lncRNA + + chr12:8082269-8138548:+ chr12:8104062:+ chr12:8234865-8291144:+ chr12:8256658:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12826000:+ chr12:12878851-12982909:+ chr12:12978934:+ chr12:8104225,chr12:8104167,chr12:8104168,chr12:8104223 chr12:12825740,chr12:12825740,chr12:12825740,chr12:12825735 NA NA chr12:8256821,chr12:8256763,chr12:8256764,chr12:8256819 chr12:12978674,chr12:12978674,chr12:12978674,chr12:12978669 NA NA sense sense unknown intron 3'UTR/splice-site deletion high none none |Helicase_C(1%) 2 1 2 4 313 unknown ENST00000534843.1 downstream upstream none CCCGCTTTTGCCTTCCTGTAGGAGGACTTAAGAGACTTCCTGAACTGtGTCTTTTCTTATCATTACTGAGATTTTGAGGCACTGCTATTGACAGAG___TACTTCCCATACACCTTTCTAGATAGTACATGCTCATGAAGTACTTGTGGAATTAACAGTGATTTCAGTGAGGAGGGACTAGAAGTTG|GATTACATCCATCGAGTAGGTCGAACAGCTAGAGCTGGGCGCTCCGGAAAGGCTATTACTTTTGTCACACA___GTATGATGTGGAACTCTTCCAGCGCATAGAACACTTAATTGGGAAGAAACTACCAGGTTTTCC...TGCTGACAGAACGCGTCGCTGAAGCCCAAAGGTTTGCCCGAATG___GAGTTAAGGGAGCATGGAGAAAAGAAGAAACGCTCGCGAGAGGATGCTGGAGATAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16990 PPT1::ANKLE2 ENSG00000131238.18::ENSG00000176915.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40076842:- chr1:40538382-40562932:- chr1:40542514:- ANKLE2 ENSG00000176915.15 protein_coding - + chr12:132725503-132761832:- chr12:132758707:+ chr12:133302089-133338418:- chr12:133335293:+ chr1:40076242,chr1:40076461,chr1:40076255,chr1:40075857 chr12:132756194,chr12:132755869,chr12:132756183,chr12:132756327 NA NA chr1:40541914,chr1:40542133,chr1:40541927,chr1:40541529 chr12:133332780,chr12:133332455,chr12:133332769,chr12:133332913 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' medium none Palmitoyl_protein_thioesterase(91%)| Palm_thioest(88%)| 2 7 12 13770 19 ENST00000642050.2 unknown upstream upstream duplicates(5),mismappers(2),mismatches(1) CGG___GGTATCAATGAGTCCTACAAGAAAAACCTGATGGCCCTGAAGAAGTTTGTGATGGTGAAATTCCTCAATGATTCCATTGTGGACCCTGTAGATTCGGAG___TGGTTTGGATTTTACAGAAGTGGCCAAGCCAAGGAAACCATTCCCTTACAGGAGACCTCCCTGTACACACAG|TGGAGACTGCCTCACCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATT?CAGGCATGAGCCACCGCAACCGGCCAAGTACACAACTTTTGAGACTGGCTTTTCCTATTCAGCATAATGCCCTTGAGATCCACCCACGTGGCAGAGTGGATCGCTGCGGAGTGGCACCCCGGGGCACCCACGTGGCAGAGTGGATCACGCAGTGTGGCACCCCGGGGCACCCACGTGGCAGAGAGGATCGCTGCGGAGTGGC...CCCCGGGGCACCCACGTGGCAGAGTGGATCAcGCAGtGTGGCACCCCGGGGCACCCACGTGGCAGAGAGGATCGCTGCGGAGTGGCACCCCGGGGTATCAG RGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKETIPLQETSLYTQ|wrlphhvgqadlelltl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16991 ENSG00000291171::COL9A2 ENSG00000291171.1::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1643 TRUE 2961 TRUE 1125 ENSG00000291171 ENSG00000291171.1 lncRNA + + chr12:132084275-132131639:+ chr12:132090943:+ chr12:132568820-132616184:+ chr12:132575488:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40301889:- chr1:40766161-40783485:- chr1:40767561:- chr12:132094544,chr12:132094543 chr1:40302205,chr1:40302206 NA NA chr12:132579089,chr12:132579088 chr1:40767877,chr1:40767878 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(13%) |Collagen(1%) 5 4 12 802 8184 ENST00000700891.1 ENST00000372748.8 downstream downstream duplicates(1),mismatches(1) ATACCACCACCTTTACAGTAAAGACGCTGCGAATTGACGCCTTTTATAATAAAGACACTTATCTTGCCCAAGAGCTGG___GCTGGAGTGTAGTGGCGCAATCTTGGATCACCACAACCTCCGTCTCCCAGGTTCAAGCGATTCTCCCGCCTCAGCCTCCTGAGTAGCAATTACAG|GAAAACGTGGAGAGAAGGGTGATCCAGGAGAAGTGGGACGGGGGCACCCCGGGATGCCTGGGCCCCCAGGGATCCCAG___GACTCCCTGGCCGGCCTGGCCAGGCAATCAACGGCAAGGATGGAGATCGAG...CCAGGAGAGGCAGGTCGACCTGGCCTGCCAGGCCCCGTGGGGCTGCCGGGCTTCTGTGAACCTGCCGCCTGCCTTGGAGCTTCGGCCTATGCCTCTGCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16992 ENSG00000291171::COL9A2 ENSG00000291171.1::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2961 TRUE 1125 ENSG00000291171 ENSG00000291171.1 lncRNA + + chr12:132084275-132131639:+ chr12:132091516:+ chr12:132568820-132616184:+ chr12:132576061:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40301889:- chr1:40766161-40783485:- chr1:40767561:- chr12:132094544,chr12:132094543 chr1:40302205,chr1:40302206 NA NA chr12:132579089,chr12:132579088 chr1:40767877,chr1:40767878 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(13%) |Collagen(1%) 2 0 13 287 8184 ENST00000389560.6 ENST00000372748.8 downstream downstream duplicates(2),mismatches(2) CCACCACCTTTACAGTAAAGACGCTGCGAATTGACGCCTTTTATAATAAAGACACTTATCTTGCCCAAGAGCTGG___...ATTTATCTTGATTGCAGGCACCTCAACAAAATTGTTATTC?TTTTTTTTT...___GCCGAGTCTCACTCTGTCGCCCAGGATGGAGTGCAGTGGCGCAATGT...ACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTACCTGGGATTACAG|GAAAACGTGGAGAGAAGGGTGATCCAGGAGAAGTGGGACGGGGGCACCCCGGGATGCCTGGGCCCCCAGGGATCCCAG___GACTCCCTGGCCGGCCTGGCCAGGCAATCAACGGCAAGGATGGAGATCGAG...CCAGTCCAGGAAACCATCTCCCCCAGGACCTTCTGTCTGGGACTCAGGAGTCCTAAGGAAAAGGAATTCTAAAACATGGGGGAAGGGGAGGTAGAGCACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16993 ENSG00000291171::COL9A2 ENSG00000291171.1::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2961 TRUE 1125 ENSG00000291171 ENSG00000291171.1 lncRNA + + chr12:132084275-132131639:+ chr12:132085316:+ chr12:132568820-132616184:+ chr12:132569861:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40301889:- chr1:40766161-40783485:- chr1:40767561:- chr12:132094544,chr12:132094543 chr1:40302205,chr1:40302206 NA NA chr12:132579089,chr12:132579088 chr1:40767877,chr1:40767878 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(13%) |Collagen(1%) 0 1 9 1224 8184 ENST00000488030.5 ENST00000372748.8 downstream downstream duplicates(1),mismatches(1) CCGCCCGGTCCGCTGTCGCAGCGCTCATCCGCGCCGGGAGCCCTTGGCTGCGTCGCCCGGCAGCCGCG___TAAAGACGCTGCGAATTGACGCCTTTTATAATAAAGACACTTATCTTGCCCAAGAGCTGG|GAAAACGTGGAGAGAAGGGTGATCCAGGAGAAGTGGGACGGGGGCACCCCGGGATGCCTGGGCCCCCAGGGATCCCAG___GACTCCCTGGCCGGCCTGGCCAGGCAATCAACGGCAAGGATGGAGATCGAG...TTGAGCATCAGGCCCAGACAGAGCCTGGCAGGCATCCTGGCGGGAAGGACCAGGTCCCCTCTGGGTGGACATGCACCCATCCCCAGTCCAGGAAACCATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16994 ENSG00000291171::COL9A2 ENSG00000291171.1::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2961 TRUE 1125 ENSG00000291171 ENSG00000291171.1 lncRNA + + chr12:132084275-132131639:+ chr12:132084399:+ chr12:132568820-132616184:+ chr12:132568944:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40301889:- chr1:40766161-40783485:- chr1:40767561:- chr12:132094544,chr12:132094543 chr1:40302205,chr1:40302206 NA NA chr12:132579089,chr12:132579088 chr1:40767877,chr1:40767878 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(13%) |Collagen(1%) 0 3 1 508 8184 ENST00000700891.1 ENST00000372748.8 downstream downstream none GGCCGGTCGGTTTGGTCGGTTGTAGTGGCCTCGCCGCCCGGTCCGCTGTCGCAGCGCTCATCCGCGCCGGGAGCCCTTGGCTGCGTCGCCCGGCAGCCGCG|GAAAACGTGGAGAGAAGGGTGATCCAGGAGAAGTGGGACGGGGGCACCCCGG...AATCAACGGCAAGGATGGAGATCGAGGGTCCCCAGGGGCTCCAGGAGAGGCAGGTCGACCTGGCCTGCCAGGCCCCGTGGGGCTGCCGGGCTTCTGTGAACCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16998 FBRSL1::COL9A2 ENSG00000112787.14::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1645 TRUE 2963 TRUE 1126 FBRSL1 ENSG00000112787.14 protein_coding + + chr12:132489551-132585188:+ chr12:132490861:+ chr12:133066137-133161774:+ chr12:133067447:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40306187:- chr1:40766161-40783485:- chr1:40771859:- chr12:132506904,chr12:132506904,chr12:132506904,chr12:132506904 chr1:40306762,chr1:40306771,chr1:40306790,chr1:40306786 NA NA chr12:133083490,chr12:133083490,chr12:133083490,chr12:133083490 chr1:40772434,chr1:40772443,chr1:40772462,chr1:40772458 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(55%) |Collagen(10%) 1 11 2 529 6870 ENST00000434748.2 ENST00000372748.8 downstream downstream duplicates(1) GCGCCGCCGCCGCCGCGAGTCCAGCTCGCAGGAGGAGGAGGTCATCGACGGCTTCGCCATCGCCAGCTTCAGCACCCTGGAGGCCCTGGAG|GGTGTGCCAGGCCAGCCTGGGACAAAAGGAGGCCCTGGAGACCAG___GGTGAGCCGGGCCCGCAGGGCCTTCCTGGATTCTCTGGTCCCCCTGGGAAAGAG___GGAGAGCCAGGGCCTCGAGGAGAAATTGGTCCCCAGGGCATCATGGGACAGAAG___GGTGACCAAGGCGAGAGGGGTCCAGTGGGGCAACCAGGCCCTCAGGGAAGGCAG___GGCCCTAAGGGGGAGCAGGGCCCCCCCGGAATTCCAGGGCCCCAAGGCTTGCCAGGCGTCAAAGGAGACAAG___GGCTCCCCAGGGAAGACCGGGCCCCGCGGCAAAGTG___GGTGACCCAGGGGTGGCCGGCCTCCCCGGAGAGAAAGGCGAGAAG___GGCGAGTCCGGCGAGCCGGGGCCCAAGGGACAG___CAAGGAGTACGTGGAGAACCCGGCTACCCTGGCCCCAGCGGGGATGCGGGCGC RRRRRESSSQEEEVIDGFAIASFSTLEALE|GVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 16999 FBRSL1::COL9A2 ENSG00000112787.14::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2963 TRUE 1126 FBRSL1 ENSG00000112787.14 protein_coding + + chr12:132489551-132585188:+ chr12:132490861:+ chr12:133066137-133161774:+ chr12:133067447:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40305768:- chr1:40766161-40783485:- chr1:40771440:- chr12:132506904,chr12:132506904,chr12:132506904,chr12:132506904 chr1:40306762,chr1:40306771,chr1:40306790,chr1:40306786 NA NA chr12:133083490,chr12:133083490,chr12:133083490,chr12:133083490 chr1:40772434,chr1:40772443,chr1:40772462,chr1:40772458 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Collagen_triple_helix_repeat_(20_copies)(52%) |Collagen(9%) 0 1 2 529 7379 ENST00000434748.2 ENST00000372748.8 downstream downstream none CCGCGCGTCCCCCGCGCCGCCGCCGCCGCGAGTCCAGCTCGCAGGAGGAGGAGGTCATCGACGGCTTCGCCATCGCCAGCTTCAGCACCCTGGAGGCCCTGGAG|GGTGAGCCGGGCCCGCAGGGCCTTCCTGGATTCTCTGGTCCCCCTGGGAAAGAG___GGAGAGCCAGGGCCTCGAGGAGAAATTGGTCCCCAGGGCATCATGGGACAGAAGGTAAGTGCCTGGCACAAT...GGGTGcCCCAGGGGTGGCCGGCCcCCCCGGAGAGAAAGGCGAGAAG___GGCGAGTCCGGCGAGCCGGGGCCCAAGGGACAG___CAAGGAGTACGTGGAG ARPPRRRRRESSSQEEEVIDGFAIASFSTLEALE|GEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKvsawh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17004 PPT1::EP400 ENSG00000131238.18::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1648 FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132053146:+ chr12:132434487-132565005:+ chr12:132537691:+ chr1:40080699 chr12:132051768 NA NA chr1:40546371 chr12:132536313 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Palmitoyl_protein_thioesterase(61%)| Palm_thioest(33%)| 3 0 5 11850 3726 ENST00000642050.2 ENST00000389561.7 upstream upstream duplicates(2) TGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACCCTGATGGAG___GACGTGGAGAACAGCTTCTTCTTGAATGTCAATTCCCAAGTAACAACAGTGTGTC...TGGGATTCTCCCAGGGAGGCCAATTTCT___GAGGGCAGTGGCTCAGAGATGCCCTTCACCTCCCATGATCAATCTGATCTCGGTTGGGGGACAACATCAAG___GTGTTTTTGGACTCCCTCGATGCCCAGGAGAGAGCTCTCACATCTGTGACTTCATCCGAAAAACACTGAATGCTGGGGCGTACTCCAAAGTTGTTCAGGAACG|TGGAATCAACTATGACAAGCCGCTGCCTCCCATCCAGGTGGCATCTCTCCGTGCAGAGCGAATCGCAAAAGAGAAAAAG___GCTCTGGCTGATCAGCAGAAGGCACAGCAGCCGGCCGTGGCCCAGCCACCCCCGCCCCA GFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQEr|GINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPAVAQPPPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17010 FBRSL1::EP400 ENSG00000112787.14::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2966 TRUE 1127 FBRSL1 ENSG00000112787.14 protein_coding + + chr12:132489551-132585188:+ chr12:132508350:+ chr12:133066137-133161774:+ chr12:133084936:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:131979697:+ chr12:132434487-132565005:+ chr12:132464242:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |E1A-binding_protein_p400__N-terminal(4%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |EP400_N(0%),HSA(100%),Helicase_C(100%),SNF2-rel_dom(100%) 1 3 2 1218 848 ENST00000434748.2 ENST00000333577.8 downstream upstream duplicates(1) GTCATCGACGGCTTCGCCATCGCCAGCTTCAGCACCCTGGAGGCCCTGGAG___AAGGATATGGCCCTGAAGCCACATGAGCGGAAGGAGAAGTGGGAGCGTCGTCTCATCAAGAAGCCCCGGGAGTCGGAAACCTGCCCCCCTGCGGAGCCCAGTGAGAA...CGGCCCCTGGAGGCAGGCAGCCCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCACTGCAGCCCTCCAAGCAG|CAAGCCCTCGCAGGGAGCCTGGTAGCAGGGGCCGGAAGCACAGTAGAGACGGACCTGTTTAAGAGGCAGCAGGCGATGCCCTCCACAGGTATGGCAG___AGCAGTCTAAGAGGCCTCGCCTTGAAGTGGGTCACCAAGG...GTTTTCCAGCACCCAGGGGCGGACGCAGGCGTTCCTCTCCAGCAACTAATGCCGACCGCACAAG___GAGGAATGCCCCCCACGCCGCAGGCCGCGCAGCTCGC...GGTGAAGAtgCAGCAGCaCAATGTTCCCATCCCTGCACCGCCCAGCAGCCAACTCCCCATCCCTCCCTCGCAGCCTGCcCAGCTGGCCCTCCACGTTCCCA RPLEAGSPGQDLEPACDGARKVPLQPSKQ|QALAGSLVAGAGSTVETDLFKRQQAMPSTGMAEQSKRPRLEVGHQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17011 FBRSL1::EP400 ENSG00000112787.14::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2966 TRUE 1127 FBRSL1 ENSG00000112787.14 protein_coding + + chr12:132489551-132585188:+ chr12:132508350:+ chr12:133066137-133161774:+ chr12:133084936:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:131979694:+ chr12:132434487-132565005:+ chr12:132464239:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |E1A-binding_protein_p400__N-terminal(4%),HSA_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |EP400_N(0%),HSA(100%),Helicase_C(100%),SNF2-rel_dom(100%) 0 0 0 1218 848 ENST00000434748.2 ENST00000389561.7 downstream upstream mismatches(1) CGGGAGTCGGAAACCTGCCCCCCTGCGGAGCCCAGTGAGAACAGGCGGCCCCTGGAGGCAGGCAGCgCCGGGCAGGACCTCGAACCCGCCTGCGATGGGGCGAGAAAGGTCCCACTGCAGCCCTCCAAGCAG|CAGCAAGCCCTCGCAGGGAGCCTGGTAGCAGGGGCCGGAAGCACAGTAGAGgCGGA RESETCPPAEPSENRRPLEAGSaGQDLEPACDGARKVPLQPSKQ|QQALAGSLVAGAGSTVEa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17052 RLF::EP400 ENSG00000117000.9::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2968 TRUE 1128 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132031953:+ chr12:132434487-132565005:+ chr12:132516498:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Helicase_conserved_C-terminal_domain(50%) |Helicase_C(8%) 1 0 0 5138 4809 ENST00000372771.5 ENST00000389561.7 downstream upstream none CGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTC...TCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAACTGATGAGGAGTTTCAACAGAGACAGGCGGATTTTTTGTGCCATTCTCTCCACTCACAGCCG SSLNYCRSFCQ|ELMRSFNRDRRIFCAILSTHS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17053 RLF::EP400 ENSG00000117000.9::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2968 TRUE 1128 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40202614:+ chr1:40627059-40706593:+ chr1:40668286:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132064668:+ chr12:132434487-132565005:+ chr12:132549213:+ chr1:40228095,chr1:40203348 chr12:132046103,chr12:132058513 NA NA chr1:40693767,chr1:40669020 chr12:132530648,chr12:132543058 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none none 1 0 0 1233 3133 ENST00000372771.5 ENST00000389561.7 downstream upstream none AAACGGAGGAAG___TCAATAAATTGATTGCACAAGAAGGACCTTCCTTTCTGCAAATGCGAATAAAACATTTGTTGAAATCTAACTGCATCCCCCAGGCTACT...TTcCAAATGTGTCATCTTTTCAGCAAGCCTATATCACATGTTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGAG|GAACACCTCATCAAAATGCAG pNVSSFQQAYITCLCSMLPNEDAIKE|EHLIKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17054 RLF::EP400 ENSG00000117000.9::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2968 TRUE 1128 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132076516:+ chr12:132434487-132565005:+ chr12:132561061:+ chr1:40228095,chr1:40203348 chr12:132046103,chr12:132058513 NA NA chr1:40693767,chr1:40669020 chr12:132530648,chr12:132543058 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none none 0 0 0 5138 5010 ENST00000372771.5 ENST00000389561.7 downstream upstream mismatches(1) CGGAGGaaTCATgTTTGAAgTACTGCCGGAGCTTCTGCCAG|GTTGCAAAACTTCCTCAAGTTGTTCAACAGCAAACACCCGTGGCCAGCATCCAGCAAGTT...CCCAACCCAGCCCAGGTGCCCaCCAGCTCCGACAGCCCAAGCCAGCAGCCCAAGTTACAGATGAGGGTCCCTGCTGTCAGGCTAAAGACACCTACTAAGCC EeScLkYCRSFCQ|VAKLPQVVQQQTPVASIQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17055 RERE::SLC2A5 ENSG00000142599.20::ENSG00000142583.18 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1649 TRUE 2969 TRUE 1129 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8614561:- chr1:8412457-8908980:- chr1:8674620:- SLC2A5 ENSG00000142583.18 protein_coding - - chr1:9035106-9088478:- chr1:9058250:- chr1:9095165-9148537:- chr1:9118309:- chr1:8614197,chr1:8614199 chr1:9066408,chr1:9066407 NA NA chr1:8674256,chr1:8674258 chr1:9126467,chr1:9126466 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none BAH_domain(39%)|Sugar_(and_other)_transporter(100%) BAH(28%)|MFS_1(100%),Sugar_tr(100%) 127 75 159 550 255 ENST00000656437.1 ENST00000486632.5 upstream downstream duplicates(53),low_entropy(3),mismatches(14) GAAGAAACCACCGAAAAAAAAGTCTCGTTATGAAAGGACAGATACCGGTGAGATAACATCCTACATCACTGAAGATGATGTGGTCTACAGACCAGGAG___ACTGTGTGTATATCGAGAGTCGGAGGCCAAACACACCGTATTTCATCTGTAGCATTCAAGACTTCAAACTG___GTCCACAACTCCCAGGCCTGTTGCAGATCTCCAACTCCTGCTTTGTGTGACCCCCCAGCATGCTCTCTGCCGGTGGCATCACAGCCACCACAGCATCTTTCTGAAGCCGGGAGAGGGCCTGTAGGG|AGGCTGACGCTTGTGCTTGCCCTGGCAACCCTGATAGCTGCCTTTGGGTCATCCTTCCAGTATGGGTACAACGTGGCTGCTGTCAACTCCCCAGCACTG___CTCATGCAACAATTTTACAATGAGACTTACTATGGTAGGACCGGTGAATTCATGGAAGACTTCCCCTTGACGTTGCTGTGGTCTGTAACCGTGT KKPPKKKSRYERTDTGEITSYITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPTPALCDPPACSLPVASQPPQHLSEAGRGPVG|RLTLVLALATLIAAFGSSFQYGYNVAAVNSPALLMQQFYNETYYGRTGEFMEDFPLTLLWSVTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma LUNG,UTERUS,LIVER exact 8877219,8555123|8555123,8877219 FALSE,FALSE|FALSE,FALSE 9129653,9118309|9129653,9107793 FALSE,TRUE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-5UTR,In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17056 RERE::SLC2A5 ENSG00000142599.20::ENSG00000142583.18 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2969 TRUE 1129 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8614561:- chr1:8412457-8908980:- chr1:8674620:- SLC2A5 ENSG00000142583.18 protein_coding - - chr1:9035106-9088478:- chr1:9047734:- chr1:9095165-9148537:- chr1:9107793:- chr1:8614197,chr1:8614199 chr1:9066408,chr1:9066407 NA NA chr1:8674256,chr1:8674258 chr1:9126467,chr1:9126466 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BAH_domain(39%)|Sugar_(and_other)_transporter(82%) BAH(28%)|MFS_1(48%),Sugar_tr(48%) 0 1 18 550 479 ENST00000656437.1 ENST00000486632.5 upstream downstream duplicates(5),mismatches(2) GTATATCGAGAGTCGGAGGCCAAACACACCGTATTTCATCTGTAGCATTCAAGACTTCAAACTG___GTCCACAACTCCCAGGCCTGTTGCAGATCTCCAACTCCTGCTTTGTGTGACCCCCCAGCATGCTCTCTGCCGGTGGCATCACAGCCACCACAGCATCTTTCTGAAGCCGGGAGAGGGCCTGTAGGG|AAAAGGGGCCTTGCTGTTCAACAACATATTTTCTATCGTGCCTGCGATCTTAATGGGATGCAGCAGAGTCGCCACATCATTTGAGCTTATCATTATTTCCAGACTTTTGGTGGGAATATGTGCAG___GTGTATCTTCCAACGTGGTCCCCATGTACTTAGGGGAGCTGGCCCCTAAAAACCT YIESRRPNTPYFICSIQDFKLVHNSQACCRSPTPALCDPPACSLPVASQPPQHLSEAGRGPVG|krglavqqhifyracdlngmqqsrhii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma LUNG,UTERUS,LIVER exact 8877219,8555123|8555123,8877219 FALSE,FALSE|FALSE,FALSE 9129653,9118309|9129653,9107793 FALSE,FALSE|FALSE,TRUE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-5UTR,In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17058 SF3A3::GNL2 ENSG00000183431.12::ENSG00000134697.13 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2970 FALSE NA SF3A3 ENSG00000183431.12 protein_coding - - chr1:37956975-37990075:- chr1:37979465:- chr1:38422647-38455747:- chr1:38445137:- GNL2 ENSG00000134697.13 protein_coding - - chr1:37566816-37595937:- chr1:37568357:- chr1:38032417-38061538:- chr1:38033958:- chr1:37978679,chr1:37978681 chr1:37568610,chr1:37568609 NA NA chr1:38444351,chr1:38444353 chr1:38034211,chr1:38034210 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Pre-mRNA-splicing_factor_SF3A3__of_SF3a_complex__Prp9(100%),Replication_stress_response_SDE2_C-terminal(16%),Splicing_factor_SF3a60_binding_domain(100%)| SDE2_2C(61%),SF3A3(100%),SF3a60_bindingd(100%)| 4 4 19 4424 3030 ENST00000373019.5 ENST00000373062.8 upstream downstream none GCAGAGTATAAGAG___ATACCTAGAGATGCTGCTTGAGTACCTTCAGGATTACACAGATAGAGTGAAGCCTCTCCAAGATCAGAATGAACTTTTTGGGAAGATTCAGGCTGAGTTTGAGAAGAAATGGGAGAATGGGACCTTTCCTGGATGGCCG___...GAAAGAGACAAGCAGTGCCCTGACCCATGCTGGAGCCCATCTTGACCTCTCTGCATTCTCCTCCTGGGAG|AATATCCAAGGGACTGAGTGAAAAGATATTTGCAAAACCTGAAGAACAAAGAAAAACACTGGAAGAAGATGTAGATGACAGAG___CACCTTCCAAAAAGGGAAAGAAGCGGAAGGCACAAAGGGAAGAGGAACAGGAACATTCAAATAAAGCTCC...___CGGA KETSSALTHAGAHLDLSAFSSWE|niqgte* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17060 ENTPD4::ADAM7-AS1 ENSG00000197217.13::ENSG00000253535.5 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENTPD4 ENSG00000197217.13 protein_coding - - chr8:23385783-23457695:- chr8:23434317:- chr8:23243296-23315208:- chr8:23291830:- ADAM7-AS1 ENSG00000253535.5 lncRNA - + chr8:24295814-24912073:- chr8:24756359:+ chr8:24153327-24769586:- chr8:24613872:+ chr8:23433286,chr8:23433289 chr8:24752835,chr8:24752832 NA NA chr8:23290799,chr8:23290802 chr8:24610348,chr8:24610345 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none GDA1/CD39_(nucleoside_phosphatase)_family(99%)| GDA1_CD39(21%)| 37 24 30 291 74 ENST00000356206.10 unknown upstream upstream duplicates(15),low_entropy(2),mismatches(7) CCATTTTGCGGGAACGCTTTGACCGAGGACTGTACGCCTCTCATGCTGACCTCCACAGGCTTAA___GTATCAGTGCTTCAAATCGGCCTGGATGTTTGAGGTGTTTCATAGGGGCTTTTCGTTTCCTGTCAACTATAAAAGCTTAAAGACTGCCTTGCAAGTTTACGACAAGGAGGTTCAGTGGACCCTTGGAGCCATCCTCTACAGGACCCGCTTTCTACCATTAAG|GATGATGATGAAGAAGGAGGAGGAAGAGAAGAGGAGAAAGGGGAAGGGAAGGAGAAGAAGAGAGAGAAAGAGAAGAAGGGTGAGGAGGATACGAAAAGAGCTAACAGCAAAGCACATCACTGAAGTAACTTGGAACTGGACTCCATCCAGAATCTTAATCGTGTGTGTGTGTGTGTGT ILRERFDRGLYASHADLHRLKYQCFKSAWMFEVFHRGFSFPVNYKSLKTALQVYDKEVQWTLGAILYRTRFLPLr|mmmkkeeeekrrkgkgrrrrerkrrrvrrirkeltakhitevtwnwtpsrilivcvcv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17061 PCMTD1::RB1CC1 ENSG00000168300.14::ENSG00000023287.13 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51845661:- chr8:52730135-52811746:- chr8:52758221:- RB1CC1 ENSG00000023287.13 protein_coding - + chr8:52622458-52745843:- chr8:52673071:+ chr8:53535018-53658403:- chr8:53585631:+ chr8:51844817,chr8:51844817,chr8:51844821 chr8:52672233,chr8:52672234,chr8:52672229 NA NA chr8:52757377,chr8:52757377,chr8:52757381 chr8:53584793,chr8:53584794,chr8:53584789 NA NA sense antisense unknown CDS/splice-site intron inversion/5'-5' high none Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)(60%)| PCMT(52%)| 19 34 31 179 62 ENST00000519559.1 unknown upstream upstream duplicates(22),mismatches(2) GCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAG___GTCCTTTTGGAATAAATCATGGGATTGAGCTTCATTCAGATGTGGTGGAATATGCCAAGGAAAAACTGGAGAGCTTCATCAAAAATAGTGATAGCTTTGATAA|GCATCCCAGACAATGTGCTATCCTGCTCTAAATAGTGAATCAAAGATGAACTCTTCTTCGACTGCATGCTCCTTGAAAAGTTTAACTATTTTTAACAATTATCTTTTGACAACAGCAGCCTTCACAACATTATTTAACATTTCTGTAACAATGAAACATGCCCCATCAACTTCCTTCCTGGTGTCAAAGATTTTGCATCAGTTTGCAGATCAGATATGAAGGGGTATTTATTCCTCAGGTTTAAAAGGTTTTCAGGTGTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17062 MTF1::ZC3H12A-DT ENSG00000188786.10::ENSG00000233621.3 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTF1 ENSG00000188786.10 protein_coding - - chr1:37809574-37859592:- chr1:37857251:- chr1:38275246-38325264:- chr1:38322923:- ZC3H12A-DT ENSG00000233621.3 lncRNA - - chr1:37350934-37474432:- chr1:37352557:- chr1:37816535-37940033:- chr1:37818158:- chr1:37847930,chr1:37847930,chr1:37847932,chr1:37847932 chr1:37355900,chr1:37355897,chr1:37355899,chr1:37355897 NA NA chr1:38313602,chr1:38313602,chr1:38313604,chr1:38313604 chr1:37821501,chr1:37821498,chr1:37821500,chr1:37821498 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 33 20 29 408 102 ENST00000373036.5 ENST00000668045.1 upstream downstream duplicates(16),mismatches(1) GCAGGACCCTGGCACTTTGGAGGATGAAGATGACGACGGACAGTGCGGAGAACACTTGCCTTTTCTAGTAGGGGGTGAAGAGGGCTTTCACCTGATAGATCATGAAGCAATGTCCCAGGGTTATGTGCAGCACATTATCTCACCAGATCAGATTCATTTGACAATAAACCCTGGTTCCACACCCATGCCAAGAAATATTGAAGGTGCAACCCTCACTCTGCAGTCGGAATGTCCGGAAACAAAACGTAAAGAA|GTTAGAGCTGGGCAAAGAGGAAGCTGCTCAGGATTGGAAGGTGGGAGAGAAGCATCAGCCATCACTCTCTGAGGTCGCCACAGTCAGATGGAGTGACAGATGAAGAGATGCCTGGTGGGTCCCAGCTTGTCCTCGTTCTTCTCCCTTTGCCTCCAGCTCTTCTCCCTGGCTACCTACCCTGTTGGCCAATGGCGGCTCATGCTCATCACCAGG QDPGTLEDEDDDGQCGEHLPFLVGGEEGFHLIDHEAMSQGYVQHIISPDQIHLTINPGSTPMPRNIEGATLTLQSECPETKRKE|vragqrgscsgleggreasaitl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17063 MEAF6::INPP5B ENSG00000163875.16::ENSG00000204084.14 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEAF6 ENSG00000163875.16 protein_coding - - chr1:37489993-37514766:- chr1:37495885:- chr1:37955594-37980367:- chr1:37961486:- INPP5B ENSG00000204084.14 protein_coding - + chr1:37860697-37947053:- chr1:37907268:+ chr1:38326369-38412725:- chr1:38372940:+ chr1:37495448,chr1:37495455 chr1:37904775,chr1:37904769 NA NA chr1:37961049,chr1:37961056 chr1:38370447,chr1:38370441 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Histone_acetyltransferase_subunit_NuA4(100%)| NuA4(100%)| 13 20 29 3433 185 ENST00000373075.6 unknown upstream upstream duplicates(12) AGGATCTGGATGGATCTGTGCAGGGAGTGAAACCTCAGAAGGCTGCTTCTTCTACTTCCTCAGGGAGTCACCACAGCAGCCATAAAAAGCGAAAGAATAAAAACCGGCACAG___CCCGTCTGGCATGTTTGATTATGACTTTGA___GATTGATCTGAAGTTAAACAAAAAACCACGAGCT|ATATTACCTTTTGTTGGAACTCAAGAGACATGAATGGCCTTGCCATACTGCTGCTTTCTGACTGAGCTCCTCTCTACCCTGAATACAAGAGACCCTCATAGTTAGGCAGGAATATAATCGACCTATTCAGCATGAAGAAGTTACAGAAGATGGATTTTCATCCCTTTGCAACCCTTATGATTAAGGGCTCTTTTATAAAAGGGAGGGAGAAATATCAGAGGCATTTGAACCtCAGTAACTCCATCTTGAATAGGGGCCAGGTAAAAT DLDGSVQGVKPQKAASSTSSGSHHSSHKKRKNKNRHSPSGMFDYDFEIDLKLNKKPRA|ilpfvgtqet* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5581 chr1:37500935-37500994:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17064 PRKRIP1::CUX1 ENSG00000128563.13::ENSG00000257923.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1652 TRUE 2971 TRUE 1130 PRKRIP1 ENSG00000128563.13 protein_coding + + chr7:102363872-102426676:+ chr7:102397698:+ chr7:102004319-102067123:+ chr7:102038145:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102234052:+ chr7:101459184-101927250:+ chr7:101877332:+ chr7:102398313,chr7:102398310 chr7:102230915,chr7:102230909 NA NA chr7:102038760,chr7:102038757 chr7:101874195,chr7:101874189 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF1168)(20%)|CASP_C_terminal(100%),CUT_domain(24%),Homeodomain(100%) DUF1168(4%)|CASP_C(100%),CUT(1%),Homeobox_KN(100%),Homeodomain(100%) 15 12 35 366 136 ENST00000496391.5 ENST00000645010.1 downstream upstream duplicates(9),mismatches(3) AGGGAGAGGAGCCGTGGATAATGGAAGGTGAATTTCCATGTCAACATAGTCCAG___...CTCGTCATCCCCAAGAATGCGGCGGAGGAGCAGAAGCTCAAGCTGGAGCGGCTCATGAAGAACCCG___GACAAAGCAGTTCCAATTCCAGAGAAAATGAGTGAATGGGCACCTCGACCTCCCCCAGAATTTGTCCGAGATGTCATGG|GCCAGCGCTTATTTGGGGAGACCATCTTAGGGCTCACCCAAGGCTCTGTCTCTGACCTCCTTGCCCGCCCCAAACCCTGGCATAAGCTCAGTCTGAAAGGACGAGAGCCCTTCGTCCGGATGCAGCTGTGGCTGAACGACCCCAACAATGTGGAGAAGCTGATGGACATGAAACGGATGGAGAAGAAAG___CCTACATGAAGCGGCGGCACAGCTCAGTCAGTGACAGCCAGCCCTGCGAACCGCCCTCTG LVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVM|gQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMDMKRMEKKAYMKRRHSSVSDSQPCEPPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 17065 PRKRIP1::CUX1 ENSG00000128563.13::ENSG00000257923.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1653 TRUE 2971 TRUE 1130 PRKRIP1 ENSG00000128563.13 protein_coding + + chr7:102363872-102426676:+ chr7:102396537:+ chr7:102004319-102067123:+ chr7:102036984:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102234052:+ chr7:101459184-101927250:+ chr7:101877332:+ chr7:102398313,chr7:102398310 chr7:102230915,chr7:102230909 NA NA chr7:102038760,chr7:102038757 chr7:101874195,chr7:101874189 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Protein_of_unknown_function_(DUF1168)(0%)|CASP_C_terminal(100%),CUT_domain(24%),Homeodomain(100%) DUF1168(0%)|CASP_C(100%),CUT(1%),Homeobox_KN(100%),Homeodomain(100%) 3 4 18 236 136 ENST00000496391.5 ENST00000645010.1 downstream upstream duplicates(2),mismatches(3) TCGCTTGTGAAACTGGAAGGCTGCCATGGCTAGCCCAGCCGCCTCCTCGGTGCGACCACCGAGGCCCAAGAAAGAGCCGCAGACGCTCGTCATCCCCAAGAATGCGGCGGAGGAGCAGAAGCTCAAGCTGGAGCGGCTCATGAAGAACCCG|GCCAGCGCTTATTTGGGGAGACCATCTTAGGGCTCACCCAAGGCTCTGTCTCTGACCTCCTTGCCCGCCCCAAACCCTGGCATAAGCTCAGTCTGAAAGGACGAGAGCCCTTCGTCCGGATGCAGCTGTGGCTGAACGACCCCAACAATGTGGAGAAGCTGATGGACATGAAACGGATGGAGAAGAAAG___CCTACATGAAGCGGCGGCACAGCTCAGTC MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNP|asaylgrps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 17066 PRKRIP1::CUX1 ENSG00000128563.13::ENSG00000257923.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2971 TRUE 1130 PRKRIP1 ENSG00000128563.13 protein_coding + + chr7:102363872-102426676:+ chr7:102376322:+ chr7:102004319-102067123:+ chr7:102016769:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102234052:+ chr7:101459184-101927250:+ chr7:101877332:+ chr7:102398313,chr7:102398310 chr7:102230915,chr7:102230909 NA NA chr7:102038760,chr7:102038757 chr7:101874195,chr7:101874189 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |CASP_C_terminal(100%),CUT_domain(24%),Homeodomain(100%) |CASP_C(100%),CUT(1%),Homeobox_KN(100%),Homeodomain(100%) 1 5 4 451 136 ENST00000496391.5 ENST00000645010.1 downstream upstream mismatches(1) GAGAAGATAGCATACGGGGATGTGATGTTGGAGAACTACAGCCATCTAGTTTCTGTGG___GGTATGATTATCACCAAGCCAAACATCATCATGGAGTGGAGGTGAAGGAAGTGGAGCAGGGAGAGGAGCCGTGGATAATGGAAGGTGAATTTCCATGTCAACATAGTCCAG|GCCAGCGCTTATTTGGGGAGACCATCTTAGGGCTCACCCAAGGCTCTGTCTCTGACCTCCTTGCCCGCCCCAAACCCTGGCATAAGCTCAGTCTGAAAGGACGAGAGCCCTTCGTCCGGATGCAGCTGTGGCTGAACGACCCCAACAATGTGGAGAAGCTGATGGACATGAAACGGATGGAGAAGAAAG___CCTACATGAAGCGGCGGCACAGCTCAGTCAGTGACAGCCAGCCCTGCGAACCGCCCTCTGTCGGCACCGAGTACAGCCAGGGCGCCAG...ACCAAAAACCATCGAAGACCTCGCCACCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAG___GTCTCGGATCCGCAGAGAACTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 17069 PXDNL::ANK1 ENSG00000147485.13::ENSG00000029534.22 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PXDNL ENSG00000147485.13 protein_coding - - chr8:51319577-51809445:- chr8:51809181:- chr8:52232137-52722005:- chr8:52721741:- ANK1 ENSG00000029534.22 protein_coding - + chr8:41653220-41896741:- chr8:41771667:+ chr8:41510739-41754259:- chr8:41629185:+ chr8:51746915,chr8:51746917 chr8:41739390,chr8:41739388 NA NA chr8:52659475,chr8:52659477 chr8:41596908,chr8:41596906 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Leucine_rich_repeat(3%)| LRR_8(0%)| 5 10 16 63 39 ENST00000356297.5 unknown upstream upstream duplicates(6),mismatches(2) CAGCCACCATCACCACCACTGCGGTTGCTGCTGCAGCTGCgGCTGCTGCTCTCCCTCCGGCTGCTTCTTCGCGTGGCCAGCAGCGAATGGAGCGATGGAGCCCAGACTGTTCTGCTGGACCACTCTCTTTCTCCTGGCCGGGTGGTGCCTGCCAGGGTTGCCCTGCCCCAGCCGGTGCCTTTGCTTTAAGAGCACCGTCCGCTGCATGCACTTGATGCTGGACCACATTCCTCAGGTACCACAGCAGACCACAGTTCT|GTCTCTCTGCAGACAAGCATAATGAAAAGCTGGAGGCCTCGCCTGTGGGGTTCTGTCCTCTGGGCCACATGCAGCTATGCCAAGCAGGGATGATGTGGGAGAGAAGAAAGGGAAGAAATAGACTATGCAGCACTTAAACCCCCAGCTCGCTCCTGGCTTGATGCAGTGGGCTGTTCTCAGTATAGACAGGGACTCTG MEPRLFCWTTLFLLAGWCLPGLPCPSRCLCFKSTVRCMHLMLDHIPQVPQQTTVl|slcrqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17070 GSR::UBXN8 ENSG00000104687.14::ENSG00000104691.16 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GSR ENSG00000104687.14 protein_coding - - chr8:30678066-30727846:- chr8:30727530:- chr8:30535583-30585363:- chr8:30585047:- UBXN8 ENSG00000104691.16 protein_coding + - chr8:30729131-30767006:+ chr8:30744542:- chr8:30586648-30624522:+ chr8:30602059:- chr8:30713871,chr8:30713874,chr8:30713874,chr8:30713873 chr8:30747341,chr8:30747308,chr8:30747341,chr8:30747500 NA NA chr8:30571388,chr8:30571391,chr8:30571391,chr8:30571390 chr8:30604858,chr8:30604825,chr8:30604858,chr8:30605017 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Pyridine_nucleotide-disulphide_oxidoreductase(11%)| FAD_oxidored(0%),Pyr_redox_2(0%),Pyr_redox_3(0%)| 1 20 0 186 31 ENST00000221130.11 unknown upstream downstream duplicates(5),mismatches(1),multimappers(1) GCTGGCCAGCGCGCGCAGGGCGGCCGAGCTGGGTGCCAGGGCCGCCGTGGTGGAGAGCCACAAGCTGGGTGGCACTTGC|TGTTCGCCAGGATGCGAAAGCACTGTCTATGATTGCCCCTGTGCTCTTTGCCTCTACCCTCTTACACGTAAAACCATCACACCTGGAGGGAAAAGGTTCCTCGAAGTGAAGTCAGCTCCGGAAGTGGGGGGGCAGGGGCGATGCAGTCTGGGAGTTGTAGTCAAAGCTGCTCCGAAGCCACGCAGCCGAAGAGGCGGTCGTTCTATGCAACATTCCTGTGAAAATTACCCAGCTGTGACTGTCGAAGGGAAAAAaTCACACTTACCTATATCCGGGATCCCACGCCGGAGCTCCAGACACACAAGGGGGACAGCAGAGAG LASARRAAELGARAAVVESHKLGGTC|cspgcestvydcpcalclypltrktitpggkrflevksapevggqgrcslgvvvkaapkprsrrggrsmqhscenypavtvegkkshlpisgiprrssrhtrgtae NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17071 RLF::KCNQ4 ENSG00000117000.9::ENSG00000117013.17 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40222710:+ chr1:40627059-40706593:+ chr1:40688382:+ KCNQ4 ENSG00000117013.17 protein_coding + - chr1:40783787-40840452:+ chr1:40819459:- chr1:41249459-41306124:+ chr1:41285131:- chr1:40225063,chr1:40225063,chr1:40225063 chr1:40830074,chr1:40830079,chr1:40830053 NA NA chr1:40690735,chr1:40690735,chr1:40690735 chr1:41295746,chr1:41295751,chr1:41295725 NA NA sense antisense stop-codon CDS/splice-site CDS inversion/3'-3' high none none none 3 7 9 383 81 ENST00000372771.5 unknown downstream downstream duplicates(4),mismatches(1) ACTGCTTTATCAAAACTATGTGCAGAATCTAAAGAAATTTCAAATGTGTCATCTTTTCAGCAAGCCTATATCACATGTTTATGTTCTATGCTCCCTAATGAAGATGCTATTAAGGAG___ATTGCAAAGGTCGACTGCAAGGAAGTACTAGACATCATTTGTAATCTGGAATCTGAGGGGCAGGATAACACAGCATTTGTTCTTTGTACGACTTACCTTACCCAGCAGCTCCAAACTGCAAGTGTATATTGTTCTTG|AGCGAGTCGGCGTAGGAGGAGAAGTCGGAGTTGGCGTCCTTCTCgGCCAGGTAGACCAGGAAGGAGGCGAAGATGAGCACCAGGAACCCGATGTACCAGGCGGTGATCAGCTCCTGCGGGGCAGGCGGAGGGGCGCGGTGAGGAGCGCTGTGCCTGCCTGGGAGATGTGGGGGGCTTCCACACGGGAAAGGGATAAAGGTCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17072 MACF1::RRAGC-DT ENSG00000127603.32::ENSG00000228436.4 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39287562:+ chr1:39546988-39952849:+ chr1:39753234:+ RRAGC-DT ENSG00000228436.4 lncRNA + - chr1:38859912-38965038:+ chr1:38942302:- chr1:39325584-39430710:+ chr1:39407974:- chr1:39290987,chr1:39291265,chr1:39290986,chr1:39290987 chr1:38957470,chr1:38957469,chr1:38957471,chr1:38957469 NA NA chr1:39756659,chr1:39756937,chr1:39756658,chr1:39756659 chr1:39423142,chr1:39423141,chr1:39423143,chr1:39423141 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Calponin_homology_(CH)_domain(100%)| CH(100%)| 2 5 12 579 70 ENST00000361689.7 unknown downstream downstream duplicates(2),mismatches(1) ACAAACCTGTACCGGAAGGGTCATTTCACTTCACTTGAATTGGTTCCACCCTCTACTTTAACCACCACTCATCTGAAAGCAGAACCCTTAACCAAGGCAACCCATTCTTCTTCTACCTCCTGGTTCCGAAAGCCTATGACTCGGGCTGAACTTGTGGCCATCAGCTCCTCTGAAGATGAAGGCAATCTCCGATTTGTGTATGAACTACTGTCTTGGGTAGAAGAGATGCAG|GGCCTCACACAAGGCCAGTTATTCTCAAAATGCTTTGAATGAATAATCAGAGCTGGCAAAGCTATTTCACCAGGGGCCATGGTGTCACCAATTCTTCTGTGGACTAAATCTCTGCTGAGGATCGTCAAGTCACCCACCCTGGTGCCCAGTACAGGCCTGGCTTCAGACTGGAGCATAACCAAATGCAGAGTGATAGAGACCACCCGGTTGAGGCGTCAGAGAGCTGAGAGTGGAG...AGCAGAGGCTGCCACCGGCTCCCTGGCTAAGACCCAAGCAGGCGAAGAGGAGGACTCATTCATCCAGGGCCAGCCCAGGAGCAAGACTGCCAAGCAGGCCG TNLYRKGHFTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAISSSEDEGNLRFVYELLSWVEEMQ|gltqgqlfskcfe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17073 HEYL::P2RX7 ENSG00000163909.8::ENSG00000089041.17 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39639546:- chr1:40089107-40105315:- chr1:40105218:- P2RX7 ENSG00000089041.17 protein_coding + - chr12:121132819-121188032:+ chr12:121162417:- chr12:121570622-121625835:+ chr12:121600220:- chr1:39637125,chr1:39637128 chr12:121164917,chr12:121164917 NA NA chr1:40102797,chr1:40102800 chr12:121602720,chr12:121602720 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR translocation/5'-5' high none none none 3 7 7 356 12 ENST00000372852.4 unknown upstream downstream duplicates(3),mismatches(1) CGCGGGGCTGAGACCAGGCAGCCTGCGTTCGCCATGAAGCGACCCAAGGAGCCGAGCGGCTCCGACGGGGAGTCCGACGGACCCATCGACGTGGGCCAAGAGGGCCAGCTGAG|GGGTCAAAGCATCGTAGAACCACAGATGTGAAAGAACTGCGGAGAGGACGTTCTCCAGGAGGGACATCATTAACTCAACCCGGGCGAGAGACTAGGCTTTGACCAGGCTTTCCAACCCACGCAGCTTCAGCTTCCATCAAGCCCATCCTAACCACAACGAACACAAGGCAAGGCAAACAAGCAAAACATAATAAAGATCAGAGA MKRPKEPSGSDGESDGPIDVGQEGQLr|gqsivepqm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17075 FLRT1::MARK2 ENSG00000126500.4::ENSG00000072518.23 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2973 TRUE 1131 FLRT1 ENSG00000126500.4 protein_coding + + chr11:64035931-64119173:+ chr11:64061112:+ chr11:63803403-63886645:+ chr11:63828584:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63895159:+ chr11:63606400-63678492:+ chr11:63662631:+ chr11:64061224,chr11:64061223 chr11:63868415,chr11:63868411 NA NA chr11:63828696,chr11:63828695 chr11:63635887,chr11:63635883 NA NA sense sense unknown intron CDS/splice-site duplication high none |Kinase_associated_domain_1(100%),Protein_kinase_domain(100%),UBA/TS-N_domain(100%) Macro(40%)|ABC1(100%),KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),UBA(100%) 2 2 10 10 200 unknown ENST00000377810.8 downstream upstream none GCTCCCGGGCCGCCAGGCGACCGGGCGGGCCGGCGTCGACCTTCCCCGACCCAGGCATCCTCAACCGCGGCCTCCTCCTCCCTTGTCTTGATGGAAAGGGCTTGGCGTCCCCCCCACTCCCAACCACCTGAGAGCCTCGCGCTGGAAGGACTTTG|CCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAG___GTAGCTGTGAAGATCATTGACAAGACTCAACTGAACTCCTCCAGCCTCCAGAAA___CTATTCCGCGAAGTAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17076 FLRT1::MARK2 ENSG00000126500.4::ENSG00000072518.23 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2973 TRUE 1131 FLRT1 ENSG00000126500.4 protein_coding + + chr11:64035931-64119173:+ chr11:64036159:+ chr11:63803403-63886645:+ chr11:63803631:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63895159:+ chr11:63606400-63678492:+ chr11:63662631:+ chr11:64061224,chr11:64061223 chr11:63868415,chr11:63868411 NA NA chr11:63828696,chr11:63828695 chr11:63635887,chr11:63635883 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Kinase_associated_domain_1(100%),Protein_kinase_domain(100%),UBA/TS-N_domain(100%) Macro(24%)|ABC1(100%),KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),UBA(100%) 1 1 1 14 200 ENST00000682287.1 ENST00000377810.8 downstream upstream none CCCGGGCCCCCCTGGGCGCCCTCCGGCTCTGGTTCCCGCCCGCTCCTTGGAATAACCCCTGAGGCTCCAGCCGTCACCGCAAAGTTTCCCGAGGAGACCCGCCTCCCCGGCCGCTGCGCAG|CCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAG___GTAGCTGTGAAGATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17077 ENSG00000256824::MARK2 ENSG00000256824.1::ENSG00000072518.23 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2974 TRUE 1132 ENSG00000256824 ENSG00000256824.1 lncRNA + + chr11:64035970-64103653:+ chr11:64061112:+ chr11:63803442-63871125:+ chr11:63828584:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63895159:+ chr11:63606400-63678492:+ chr11:63662631:+ chr11:64061224,chr11:64061223 chr11:63868415,chr11:63868411 NA NA chr11:63828696,chr11:63828695 chr11:63635887,chr11:63635883 NA NA sense sense unknown intron CDS/splice-site duplication high none |Kinase_associated_domain_1(100%),Protein_kinase_domain(100%),UBA/TS-N_domain(100%) |ABC1(100%),KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),UBA(100%) 2 2 10 10 200 unknown ENST00000377810.8 downstream upstream none GCTCCCGGGCCGCCAGGCGACCGGGCGGGCCGGCGTCGACCTTCCCCGACCCAGGCATCCTCAACCGCGGCCTCCTCCTCCCTTGTCTTGATGGAAAGGGCTTGGCGTCCCCCCCACTCCCAACCACCTGAGAGCCTCGCGCTGGAAGGACTTTG|CCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAG___GTAGCTGTGAAGATCATTGACAAGACTCAACTGAACTCCTCCAGCCTCCAGAAA___CTATTCCGCGAAGTAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17078 ENSG00000256824::MARK2 ENSG00000256824.1::ENSG00000072518.23 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2974 TRUE 1132 ENSG00000256824 ENSG00000256824.1 lncRNA + + chr11:64035970-64103653:+ chr11:64036159:+ chr11:63803442-63871125:+ chr11:63803631:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63895159:+ chr11:63606400-63678492:+ chr11:63662631:+ chr11:64061224,chr11:64061223 chr11:63868415,chr11:63868411 NA NA chr11:63828696,chr11:63828695 chr11:63635887,chr11:63635883 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Kinase_associated_domain_1(100%),Protein_kinase_domain(100%),UBA/TS-N_domain(100%) |ABC1(100%),KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),UBA(100%) 1 1 1 14 200 ENST00000537170.1 ENST00000377810.8 downstream upstream none CCCGGGCCCCCCTGGGCGCCCTCCGGCTCTGGTTCCCGCCCGCTCCTTGGAATAACCCCTGAGGCTCCAGCCGTCACCGCAAAGTTTCCCGAGGAGACCCGCCTCCCCGGCCGCTGCGCAG|CCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAG___GTAGCTGTGAAGATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17079 PID1::DNER ENSG00000153823.19::ENSG00000187957.8 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1655 TRUE 2975 TRUE 1133 PID1 ENSG00000153823.19 protein_coding - - chr2:228850526-229271287:- chr2:229262683:- chr2:229715242-230136003:- chr2:230127399:- DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229388396:- chr2:230222345-230579271:- chr2:230253112:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Phosphotyrosine_interaction_domain_(PTB/PID)(0%)|EGF-like_domain(16%) PID_2(3%)|DNER_C(100%),EGF(0%),EGF_CA(100%),hEGF(0%) 2 3 9 17 1616 ENST00000392054.7 ENST00000341772.5 upstream downstream duplicates(5),mismatches(1) GCCAAAACCCAGGGCTGGAAGATGTGGCAGCCGGCaACGGAGCGCCTGCAG___GAGAGATTTGCAGACACAGAAGCGGCACAGAGAAGGCCATTGTGAAGATCAAGGCAGAAACCGGAGTTATGGCATCATAAGCCAAGGAATGCCAAGGATTGCTGGCAACCACCTGATGTTAGAAGAGTCGAGGACATGTTCTTCTCCAGAGCTTTTGGATGGTGTGTGGCCCTGCCAACCTTTACATTTTGGACTTCCAGCCTCCGAAATG|GTGAAGAGTGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGCAAACTGTGAGATCC___ACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCAT MPRIAGNHLMLEESRTCSSPELLDGVWPCQPLHFGLPASEM|vksatlt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Brain exact TRUE Lung adenocarcinoma LUNG exact 230020534 FALSE 230456604 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17080 PID1::DNER ENSG00000153823.19::ENSG00000187957.8 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1656 TRUE 2975 TRUE 1133 PID1 ENSG00000153823.19 protein_coding - - chr2:228850526-229271287:- chr2:229271014:- chr2:229715242-230136003:- chr2:230135730:- DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229388396:- chr2:230222345-230579271:- chr2:230253112:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Phosphotyrosine_interaction_domain_(PTB/PID)(0%)|EGF-like_domain(16%) PID_2(0%)|DNER_C(100%),EGF(0%),EGF_CA(100%),hEGF(0%) 1 4 7 252 1616 ENST00000392055.8 ENST00000341772.5 upstream downstream duplicates(5),mismatches(1) CGCGGCCGTGCCCACAAGTTGCCGGCAGCTGAGCGCCGCGCCTCCTCCTGCTCGCAGCCCCCTACGCCCACCCGGCGGCGGTGGCCAGCGCCAGGACGCACATCCCGCGGACACCGACCCCAGATGTAAAGCGGGACCCCAGCCCCTCGCCCCCCGGCGCGATCGACAGTCTCGCCAGCGTCTCCTCTGCCAAAACCCAGGGCTGGAAGATGTGGCAGCCGGCCACGGAGCGCCTGCAG|GTGAAGAGTGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGCAAACTGTGAGATCC___ACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCATCATTGGAGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATCCTGATCGTGGGGATTTGCCGCATCAGCCGCATTGAATACCAGGGTTCTTCCAG...CCGGCATGCCAG___GTTTGGAAAGAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATCGCCTATGAAGATTACAGTCCTGATGACAAACCCTTGGTCACAC MWQPATERLQ|vksatlt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Brain exact TRUE Lung adenocarcinoma LUNG exact 230020534 FALSE 230456604 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17082 MACROD1::MARK2 ENSG00000133315.12::ENSG00000072518.23 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MACROD1 ENSG00000133315.12 protein_coding - + chr11:63998558-64166113:- chr11:64061112:+ chr11:63766030-63933585:- chr11:63828584:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63895159:+ chr11:63606400-63678492:+ chr11:63662631:+ chr11:64061224,chr11:64061223 chr11:63868415,chr11:63868411 NA NA chr11:63828696,chr11:63828695 chr11:63635887,chr11:63635883 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |Kinase_associated_domain_1(100%),Protein_kinase_domain(100%),UBA/TS-N_domain(100%) |ABC1(100%),KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),UBA(100%) 2 2 9 10 200 unknown ENST00000377810.8 downstream upstream none GCTCCCGGGCCGCCAGGCGACCGGGCGGGCCGGCGTCGACCTTCCCCGACCCAGGCATCCTCAACCGCGGCCTCCTCCTCCCTTGTCTTGATGGAAAGGGCTTGGCGTCCCCCCCACTCCCAACCACCTGAGAGCCTCGCGCTGGAAGGACTTTG|CCCACCTTGGGACACCTTGACTCCAAGCCCAGCAGTAAGTCCAACATGATTCGGGGCCGCAACTCAGCCACCTCTGCTGATGAGCAGCCCCACATTGGAAACTACCGGCTCCTCAAGACCATTGGCAAGGGTAATTTTGCCAAGGTGAAGTTGGCCCGACACATCCTGACTGGGAAAGAG___GTAGCTGTGAAGATCATTGACAAGACTCAACTGAACTCCTCCAGCCTCCAGAAA___CTATTCCGCGAAGTAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17083 BAG4::XPO7 ENSG00000156735.11::ENSG00000130227.17 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38192795:+ chr8:38034051-38070819:+ chr8:38050313:+ XPO7 ENSG00000130227.17 protein_coding + - chr8:21919662-22006585:+ chr8:21948121:- chr8:21777173-21864096:+ chr8:21805632:- chr8:38193601,chr8:38193598 chr8:21958461,chr8:21958464 NA NA chr8:38051119,chr8:38051116 chr8:21815972,chr8:21815975 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 6 1 5 76 17 ENST00000287322.5 unknown downstream downstream duplicates(2),mismatches(2) GGGGGCGGCCCGGCGGAGACCACCTGGCTGGGAGAAGGCGGAGGAGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG___GAGCAGCCACCATATCCTAGCTACAATTCTAACTATTGGAATTCTACTGCGAGATCTAGGGCTCCTTACCCAAGTACATATCCTGTAAGACCAGAATTGCAAGGCCAG|GTCAATATATGAcAGTAAGAGGTATTACAAATTTG___GTTGCTGTTGAGATGTCTTTATCTGCCAGTCTGTTCTCTGCAGGTGATGTTTTCTTTCTGATAAGATGTTTTGTC...CCATTGCAACTTCAGCCTGGGTAACAGGGCAAGACTCCGTCAAAAAAAAAAAAAAAAAAAAATCCTGTTTTGCATATGTGGAACTTCTTTAACTTAG GGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQEQPPYPSYNSNYWNSTARSRAPYPSTYPVRPELQGQ|vni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17088 CCDC85C::MEG8 ENSG00000205476.9::ENSG00000225746.13 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99603167:- chr14:99966527-100070544:- chr14:100069504:- MEG8 ENSG00000225746.13 lncRNA + - chr14:100894770-101038859:+ chr14:100954019:- chr14:101361107-101505196:+ chr14:101420356:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none CCDC85_family(100%)| CCDC85(100%)| 2 3 4 233 13 ENST00000380243.9 unknown upstream downstream duplicates(1) TACGTCCAGCGCGGGCAGCGGCGGCAGCCCCGACCACCACCACCACGTCCCACCCCCGCTGCTGCCCCCCGGGCCGCACAAGGCCCCCGACGGCAAGGCAGGAGCCACACGTCGGTCCCTGGACGACTTGTCGGCGCCGCCGCACCACCGCAGCATCCCCAACGGCCTGCACG|TGGCAACCACAAATCTCATGACCATGAATGCTTAGGTCGGCTCAAGTGCATCCATTCTGCAGAATACAAAGAGCAG___TGTCCAGGCTCCTACCCAGAGGCAACTGTGGAGAACGCGATCACAGCAGAAGGCCT___GTGGCCATCAAAACCTTCATCAGTGGAAAATGATTGCATCAGC...TTTCTTTCTGTTTATGGATGTCATGTGTTACTGGATTAATTGAAATTCTTGATAGGTAACAGAGTTTTATCATCAGCTTATGATTGCCTATGACTAGCTCA TSSAGSGGSPDHHHHVPPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNGLH|vattnlmtmna* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17093 MACF1::INPP5B ENSG00000127603.32::ENSG00000204084.14 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2977 TRUE 1134 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39105717:+ chr1:39546988-39952849:+ chr1:39571389:+ INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891454:- chr1:38326369-38412725:- chr1:38357126:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Endonuclease/Exonuclease/phosphatase_family(100%),RhoGAP_domain(100%) |Exo_endo_phos(100%),RhoGAP(100%) 1 2 4 96 549 ENST00000524432.5 ENST00000373024.8 downstream downstream duplicates(3) CCGGCAGCCCCCGGGGCTCGGCGAGAAGGCGGTGCGGGCGGCCATGGCCGGCTACGTGCCGGGTCAGCAGCCGGCCAACCGCAGCCAGGAGAAGGAGTTCGTGCAGGCGTACGAGGATGTGCTGGAGCGGTACAAAG|GTGGTTCTAACTTTGATGGTTTGAGACCAAATGGGAAGGGAGTGCCTATGGACCAAAGCTCCAGGGGTCAAGATAAACCAGAAAGCTTGCAACCAAG___ACAGAATAAATCCAAGTCCGAAATTACTGACATGGTTCGCTCCTCCACTATCACAGTGTCGGACAAGG MAGYVPGQQPANRSQEKEFVQAYEDVLERYK|gGSNFDGLRPNGKGVPMDQSSRGQDKPESLQPRQNKSKSEITDMVRSSTITVSDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 39920769 FALSE 38352676 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17095 MACF1::INPP5B ENSG00000127603.32::ENSG00000204084.14 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 2977 TRUE 1134 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39084438:+ chr1:39546988-39952849:+ chr1:39550110:+ INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891454:- chr1:38326369-38412725:- chr1:38357126:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Endonuclease/Exonuclease/phosphatase_family(100%),RhoGAP_domain(100%) |Exo_endo_phos(100%),RhoGAP(100%) 1 0 1 146 549 ENST00000361689.7 ENST00000373024.8 downstream downstream duplicates(3) CGGCCGCCGCCGCCTTCGCTGCCGCCACGGGCCCGTCTTCTTCCTCCTTCGGCTCCCAGG___ATCACTTCTCCCTGGGCTCCCAGGCCCTCCTGCAGCAGCCC...CCCCCAGGGGACACCTTGCCCTGGAACCTGCCACTGCATGAGCAGAAAAAGCGGAAAAGCCAGGATTCGGTGCTGGACCCTGCAGAGCGTGCTGTGGTCAGAGTCGCTG|GTGGTTCTAACTTTGATGGTTTGAGACCAAATGGGAAGGGAGTGCCTATG PPGDTLPWNLPLHEQKKRKSQDSVLDPAERAVVRVA|gGSNFDGLRPNGKGVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 39920769 FALSE 38352676 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17097 CCDC85C::MIR493HG ENSG00000205476.9::ENSG00000258399.8 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99603167:- chr14:99966527-100070544:- chr14:100069504:- MIR493HG ENSG00000258399.8 lncRNA + - chr14:100836269-100955006:+ chr14:100954019:- chr14:101302606-101421343:+ chr14:101420356:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none CCDC85_family(100%)| CCDC85(100%)| 1 2 4 233 13 ENST00000380243.9 unknown upstream downstream duplicates(1) TACGTCCAGCGCGGGCAGCGGCGGCAGCCCCGACCACCACCACCACGTCCCACCCCCGCTGCTGCCCCCCGGGCCGCACAAGGCCCCCGACGGCAAGGCAGGAGCCACACGTCGGTCCCTGGACGACTTGTCGGCGCCGCCGCACCACCGCAGCATCCCCAACGGCCTGCACG|TGGCAACCACAAATCTCATGACCATGAATGCTTAGGTCGGCTCAAGTGCATCCATTCTGCAGAATACAAAGAGCAG___TGTCCAGGCTCCTACCCAGAGGCAACTGTGGAGAACGCGATCACAGCAGAAGGCCT___GTGGCCATCAAAACCTTCATCAGTGGAAAATGATTGCATCAGC TSSAGSGGSPDHHHHVPPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNGLH|vattnlmtmna* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17098 JAG1::ENSG00000232900 ENSG00000101384.12::ENSG00000232900.2 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2978 TRUE 1135 JAG1 ENSG00000101384.12 protein_coding - - chr20:10637684-10673999:- chr20:10644357:- chr20:10618332-10654647:- chr20:10625005:- ENSG00000232900 ENSG00000232900.2 lncRNA - - chr20:10875333-10909279:- chr20:10897167:- chr20:10855981-10889927:- chr20:10877815:- chr20:10643838,chr20:10643845 chr20:10899343,chr20:10899347 NA NA chr20:10624486,chr20:10624493 chr20:10879991,chr20:10879995 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Calcium-binding_EGF_domain(100%),Delta_serrate_ligand(100%),EGF-like_domain(92%),N_terminus_of_Notch_ligand_C2-like_domain(100%)| DSL(100%),EGF(74%),EGF_CA(100%),MNNL(100%),hEGF(71%)| 1 1 4 26 5 ENST00000254958.10 ENST00000448859.2 upstream downstream mismatches(1) AACCTGTAACATAG___CCCGAAACAGTAGCTGCCTGCCCAACCCCTGCCATAATGGGGGCACATGTGTGGTCAACGGCGAGTCCTTTACGTGCGTCTGCAAGGAAGGCTGGGAGGGGCCCATCTGTGCTCAGA___ATACCAATGACTGCAGCCCTCATCCCTG|GGAAATGGAAGTAGAACTCTGAAGCTAAATCAGAGGACTCCAAGCAAATGAAGTGACTG...ACCAAGAGTTGCTGTTTAGGAAGGaAAGGAAGAAACATCAGTGTCTCGTCTAGCCTCAGAAAAAAACGACTTCCTATTTTTACTACTGTTATGAATCCC...GACACCTTTGTGACGTGACTTCCAcGTTGCTATTCTcaTgTCTGtCTGGAACCTGCAAgCTCCcATCgGGAAcTATATCTCTTTAGGGAAAGGGAAGGAAG TCNIARNSSCLPNPCHNGGTCVVNGESFTCVCKEGWEGPICAQNTNDCSPHPw|emevel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6870 chr20:10649636-10649695:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17099 JAG1::ENSG00000232900 ENSG00000101384.12::ENSG00000232900.2 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2978 TRUE 1135 JAG1 ENSG00000101384.12 protein_coding - - chr20:10637684-10673999:- chr20:10644357:- chr20:10618332-10654647:- chr20:10625005:- ENSG00000232900 ENSG00000232900.2 lncRNA - - chr20:10875333-10909279:- chr20:10876230:- chr20:10855981-10889927:- chr20:10856878:- chr20:10643838,chr20:10643845 chr20:10899343,chr20:10899347 NA NA chr20:10624486,chr20:10624493 chr20:10879991,chr20:10879995 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Calcium-binding_EGF_domain(100%),Delta_serrate_ligand(100%),EGF-like_domain(92%),N_terminus_of_Notch_ligand_C2-like_domain(100%)| DSL(100%),EGF(74%),EGF_CA(100%),MNNL(100%),hEGF(71%)| 1 0 0 26 2 ENST00000254958.10 ENST00000448859.2 upstream downstream duplicates(1) AACAACGGTGGCACCTGCTATGATGAGGGGGATGCTTTTAAGTGCATGTGTCCTGGCGGCTGGGAAGGAACAACCTGTAACATAG___CCCGAAACAGTAGCTG...GGAGGGGCCCATCTGTGCTCAGA___ATACCAATGACTGCAGCCCTCATCCCTG|GAAGTGATAACACCAAGAGTTGCTGTTTAGGAAGGCAAGGAAGAAACATC EGPICAQNTNDCSPHPw|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6870 chr20:10649636-10649695:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17104 WNK1::B4GALNT3 ENSG00000060237.19::ENSG00000139044.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:754324:+ chr12:861745-1020618:+ chr12:863490:+ B4GALNT3 ENSG00000139044.12 protein_coding + - chr12:459939-563509:+ chr12:525689:- chr12:569105-672675:+ chr12:634855:- chr12:761078 chr12:526335 NA NA chr12:870244 chr12:635501 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_kinase_domain(11%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 0 1 4 649 14 ENST00000315939.11 unknown downstream downstream duplicates(2) GGGAGCAAAGAGGAGCCGCCGCCGGCGAGAAGTGGCAGCGGCGGCGGCAGCGCCAAGGAGCCACAGGAGGAACGGAGCCAGCAGCAGGATGATATCGAAGAGCTGGAGACCAAGGCCGTGGGAATGTCTAACGATGGCCGCTTTCTCAAGTTTGACATCGAAATCGGCAGAGGCTCCTTTAAGACGGTCTACAAAGGTCTGGACACTGAAACCACCGTGGAAGTCGCCTGGTGTGAACTGCAG|GTGGAAGGAGGGAGCAGGAACTCTTCCCAGCTT...ACACACGACTTACAGAAACAAAGAGAAGGAACCAGAATGAAAAAACTGAAGATTGGAAAAAGAGTGGGAGAGAAGAATACAGTCAGGAGTGTGGCTTTGGAAAGGAGAAAAGAGAGCATCACCTCACCAGCAACGGAGACAGGAGGAGAGAC GSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQ|veggsrnssq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17105 MIR3659HG::PPIEL ENSG00000224592.5::ENSG00000291129.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR3659HG ENSG00000224592.5 lncRNA + + chr1:38047314-38119025:+ chr1:38047614:+ chr1:38512986-38584697:+ chr1:38513286:+ PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39529164:- chr1:39987952-40025370:- chr1:39994836:- chr1:38099218,chr1:38099219,chr1:38099658 chr1:39539730,chr1:39539729,chr1:39540113 NA NA chr1:38564890,chr1:38564891,chr1:38565330 chr1:40005402,chr1:40005401,chr1:40005785 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 2 0 2 9 95 ENST00000432922.5 ENST00000690758.1 downstream downstream duplicates(1) CTCGCCTCCCGCGGCTGCCAGCGTGCACTGGGCGCTCCTCGGCGCGTCTGCCCGGCCCGTCTCGGCTTTCCTTCTCCTTCCTCTAGTCCCAGCGTCACAACTCCGCCGACCTCCTCTGCCCTGAGAGCGCGTCCGGTGCGGGCGGAGTCGGACGGACTCTGGCTTCACGCCTCGCGCGGGCACACCTTCTCCCGGGCACTGAGGCCCAG|GTCTGCGCAGGCATGGCACTAAGTGTCCCATGGCACATTTGGCCCTCATGGAGGCCTCAAAAGGGCAGGACCAGCACCCTCTTCTACGGAGGAAGGAACGGGCACAGCAGGTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17106 BICD1::ERGIC2 ENSG00000151746.15::ENSG00000087502.19 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BICD1 ENSG00000151746.15 protein_coding + + chr12:32106835-32383633:+ chr12:32107544:+ chr12:32259769-32536567:+ chr12:32260478:+ ERGIC2 ENSG00000087502.19 protein_coding - + chr12:29337352-29381189:- chr12:29380491:+ chr12:29490285-29534122:- chr12:29533424:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 1 1 149 1 ENST00000548411.6 unknown downstream upstream duplicates(1),mismatches(1) ATTTCCTTCTCCCTTTCCCCGCCAGCTTCGCATCCATCTCCCCCACCCCGTAACCCCCTCCTGCCTCCATCCACCGGGGCTATGGCCGCAGAAGAGGTATT...CCGAGTACGGGCTGGTGGTGCTGGAGGAGAAGCTGACCCTCAAACAGCAGTATGATGAACTGGAGGCTGAGTACGACAGCCTCAAACAGGAGCTGGAGCAGCTCAAAGAG|ATAAACAAGGCTATTCTCCACCACGAGTTGACACGTTGCCTTCGGAAGGTTTCCTGCGCCGAGGAAAAGTAGTGACAGTCGAACCTGTCTCTCAGCATCTCGCCC EYGLVVLEEKLTLKQQYDELEAEYDSLKQELEQLKE|inkailhheltrclrkvscaeek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17131 LINC02150::ENSG00000288067 ENSG00000248150.1::ENSG00000288067.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02150 ENSG00000248150.1 lncRNA - - chr5:16373361-16440081:- chr5:16430790:- chr5:16373470-16440190:- chr5:16430899:- ENSG00000288067 ENSG00000288067.1 lncRNA - + chr8:134190383-134390487:- chr8:134353484:+ chr8:135202626-135402730:- chr8:135365727:+ chr5:16430677 chr8:134351823 NA NA chr5:16430786 chr8:135364066 NA NA sense antisense unknown exon intron translocation/5'-5' medium none none none 1 1 8 12 12 ENST00000513157.1 unknown upstream upstream duplicates(1),mismatches(1) GCTCGACGCTGTTTGATGTGGAG___ATGAGTCAAACCTAAGCATTCGGCATTGGGAGCACTGTCACTAAAACTGCAGCCTCATTCAACAACACATCCTTATCGAGCACTTGCAGGTACTCCATTGAATGTTAGAAATGCATTGATGATGGAGACACAGCACCGGCTCATGAGGACCTTCCAGCCTAGGCAGCAGGACTGGACATACGCACTTTG|ACAGGCCCCTTTTCCGTAGTGATGCTGTGGTTTGCATGGGGTCCACTCCAGACCCTATTCATCCAGGTCCTTCCTGCACCTGGAGGTGTCACCAGTGGAGGCTGCAGAACAGCAAAGGTGACTGCGTGCTCCTTCCCAGAGGGACACCAAACTGATGCCAGCAGGAATGCTCCTGTATAAGGTGTCTGGCAACACCAGTTGcGGGGTCTCACTCAGTCAGTAAGTTTGAGATCCAGGACCTGCTTAACAAAGCAGTGTGTCTGCCCTCTTGGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17133 PLEKHA1::TACC2 ENSG00000107679.15::ENSG00000138162.19 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1662 FALSE NA FALSE NA PLEKHA1 ENSG00000107679.15 protein_coding + + chr10:122374696-122432354:+ chr10:122413045:+ chr10:124134212-124191870:+ chr10:124172561:+ TACC2 ENSG00000138162.19 protein_coding + + chr10:121989163-122254545:+ chr10:122195040:+ chr10:123748678-124014060:+ chr10:123954555:+ chr10:122415466 chr10:122194325 NA NA chr10:124174982 chr10:123953840 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PH_domain(51%)|Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(100%) Mcp5_PH(100%),PH(78%)|TACC_C(100%) 3 3 3 1910 343 ENST00000368990.8 ENST00000369005.6 downstream upstream mismatches(1) CTTCCTACAAGCCAATGcTCAGCAGGACCTAGTGGAATGGGTAAATGTGTTAAACAAAGCTATAAAAATTACA___GTACCAAAGCAGTCAGACTCACAGCCTAATTCTGATAACCTAAGTCGCCATGGTGAATGTGGGAAAAAGCAAGTGTCTTACAGAACTGATATTGTTGGTGGCGTACCCATCATTACTCCCACTCAG|GAGTTCCGATTCTGAAGAGGCATTTGAGACCCCGGAGTCAACGACCCCTGTCAAAGCTCCGCCAGCTCCACCCCCACCACCCCCCGAAGTCATCCCAGAACCCGAGGTCAGCACACAGCCACCCCCGGAAGAACCAG___GATGTGGTTCTGAGACAGTCCCTGTCCCTGATGGCCCACGGAGCGACTCGGTGGAAGGAAGTCCCTTCCGTCCCCCGTCACcCTCCTTCTCTGCCGTCTTCGATGAAGACAAGCCG...GATcCCGTCCCCcTCcaTAAGTCTACACTGTCCgGGTCGCTCAGCCTGCAAGCCAGTGACTTTGATGGTGCTTCTTCCTCAGGCAATCCCGAGGCCGTGG FLQANaQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRHGECGKKQVSYRTDIVGGVPIITPTQ|efrf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17138 PPM1D::LINC01999 ENSG00000170836.13::ENSG00000267772.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPM1D ENSG00000170836.13 protein_coding + + chr17:60600193-60666280:+ chr17:60633977:+ chr17:58677554-58743641:+ chr17:58711338:+ LINC01999 ENSG00000267772.1 lncRNA + + chr17:60564547-60586623:+ chr17:60577197:+ chr17:58641908-58663984:+ chr17:58654558:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Protein_phosphatase_2C(69%)| PP2C(59%)| 1 1 4 818 8 ENST00000305921.8 ENST00000592917.1 downstream upstream duplicates(1) AGGTGACACAGGACCATAAGCCAGAACTTCCCAAGGAAAGAGAACGAATCGAAGGACTTGGTGGGAG___TGTAATGAACAAGTCTGGGGTGAATCGTGTAGTTTGGAAACGACCTCGACTCACTCACAATGGACCTGTTAGAAGGAGCACAGTTATTGACCAGATTCCTTTTCTGGCAGTAGCAAGAGCACTTG|GGAATCTGTGTGAGAAGGCATGCCTTCATACTTCAGGCAGTTTACAAGACAGCCTTAGCTTTCGTTTTCTGCTTGCTACAGAGCCTTAAGGTCAGCCAGAAGCGAGTGACTGGAAACTTCTTCATTCCCATCTCTCTCCTGGaTAAaTG...TCTTTTTGTACAGCTGAGGGGCACCTGGAACATAGAAGTTAAGAAGAGATCTGGCTGGGATCAAGAAACCTCTTTTCACTGCACCTGAGGCTCAGTTGTGC VTQDHKPELPKERERIEGLGGSVMNKSGVNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARAL|gnlcekaclhtsgslqdslsfrfllatep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase, Mg2+/Mn2+ dependent 1D 1 Yes glioma, ovarian cancer, breast cancer epithelial oncogene amplification, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 17150 EPHA10::PPIEL ENSG00000183317.17::ENSG00000291129.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2984 TRUE 1136 EPHA10 ENSG00000183317.17 protein_coding - - chr1:37713880-37765133:- chr1:37752876:- chr1:38179552-38230805:- chr1:38218548:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39541841:- chr1:39987952-40025370:- chr1:40007513:- chr1:37740249 chr1:39543464 NA NA chr1:38205921 chr1:40009136 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Ephrin_receptor_ligand_binding_domain(100%),Fibronectin_type_III_domain(57%)| Ephrin_lbd(100%),fn3(4%)| 0 1 1 10 30 ENST00000427468.6 ENST00000692918.1 upstream downstream none CCGTGCGCGTGGCCGCGCTCAACGGCGTCTCGGGCCCGGCGGCCGCCGCGGGAACCACCTACGCGCAGGTCACCGTCTCCACCGGGCCCGGGG|AGAATTTTCTCTACATGTGCACCCATTTAAAGGACTCGGCTTCAAGGGAAGCAGCTTCCACCGCATTATCCCCCAGTTCATTTGCCAGGGCAGTGATTTCACAAACCACGGTGGCACCAGGG___GTCTGCGCAGGCATG...AATcACCAGCCAGCCAAGGTCCgGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGCGGACGTCATCTGCAGGGACAGAAG VRVAALNGVSGPAAAAGTTYAQVTVSTGPG|enflymcthlkdsasreaastalspssfaravisqttvapgvcag NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 10 TK Eph Q5JZY3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17151 EPHA10::PPIEL ENSG00000183317.17::ENSG00000291129.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2984 TRUE 1136 EPHA10 ENSG00000183317.17 protein_coding - - chr1:37713880-37765133:- chr1:37752876:- chr1:38179552-38230805:- chr1:38218548:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39529164:- chr1:39987952-40025370:- chr1:39994836:- chr1:37740249 chr1:39543464 NA NA chr1:38205921 chr1:40009136 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Ephrin_receptor_ligand_binding_domain(100%),Fibronectin_type_III_domain(57%)| Ephrin_lbd(100%),fn3(4%)| 0 1 0 10 95 ENST00000427468.6 ENST00000692918.1 upstream downstream duplicates(1) GCGCAGGTCACCGTCTCCACCGGGCCCGGGG|GTCTGCGCAGGCATGGCACTAAGTGTCCCATGGCACATTTGGCCCTCATGGAGGCCTCAAAAGGGCAGGA...AGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGCGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTGCTGTGTGCAGC AQVTVSTGPG|glrrhgtkcpmahlalmeaskgq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 10 TK Eph Q5JZY3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17152 EPHA10::PPIEL ENSG00000183317.17::ENSG00000291129.1 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2984 TRUE 1136 EPHA10 ENSG00000183317.17 protein_coding - - chr1:37713880-37765133:- chr1:37761405:- chr1:38179552-38230805:- chr1:38227077:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39541841:- chr1:39987952-40025370:- chr1:40007513:- chr1:37740249 chr1:39543464 NA NA chr1:38205921 chr1:40009136 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Ephrin_receptor_ligand_binding_domain(100%)| Ephrin_lbd(100%)| 0 1 0 21 30 ENST00000427468.6 ENST00000692918.1 upstream downstream duplicates(1) CAGCTGCAGCGCGGGATTCCAGGAGCGTGGaGACTTCTGCGAAG|AGAATTTTCTCTACATGTGCACCCATTTAAAGGACTCGGCTTCAAGGGAAGCAGCTTCCACCGCATTATCCCCCAGTTCATTTGCCAGGGCAGTGATTTCACAAACCACGGTaGCACCAGG SCSAGFQERGDFCE|enflymcthlkdsasreaastalspssfaravisqttvap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 10 TK Eph Q5JZY3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17157 TANGO6::SNTB2 ENSG00000103047.8::ENSG00000168807.17 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:69040421:+ chr16:68877434-69119085:+ chr16:69074324:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69284048:+ chr16:69221050-69342955:+ chr16:69317951:+ chr16:69065372,chr16:69065372,chr16:69065373 chr16:69279544,chr16:69279554,chr16:69279542 NA NA chr16:69099275,chr16:69099275,chr16:69099276 chr16:69313447,chr16:69313457,chr16:69313445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%)| RTP1_C1(100%)| 5 3 0 49 67 ENST00000261778.2 ENST00000336278.9 downstream upstream duplicates(2) TGCCGGACTTGTTGGCTCAATATGACAGCAGCAAAGACAAGCACACACCAGAGACCAGAATGAAAGTCGGGGAAGTCCTTATGCGAATCGTCAGGGCATTAG___GAGACATGGTCTCAAAGTACCGAGAACCTTTGATCCATACCTTCCTGAGGGGAGTGAGAGATCCTGATGGTGCTCACAGGGCCAGCAGCTTGGCCAACCTTGGGGAGCTG...CCATGAG___GTAACAGCTTGCCTGATTGCTGTGGCCAAAACAGATGGTGAAGTTCAAGTACGCAGAGCTGCCATACATGTGGTTGTGCTGCTGCTTCGGGGACTCAGCCAGAAAGCTACTGAG|GTTGGTTCATTCTGGCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTG...GCTGATCAAGGAAGTCTCTCTAG___GCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTAC HEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATE|vgsfwlrmsiplpwi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17188 STK40::OSCP1 ENSG00000196182.11::ENSG00000116885.18 NCIH1341 SRR8615904 SRR8652143 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1663 TRUE 2990 TRUE 1137 STK40 ENSG00000196182.11 protein_coding - - chr1:36339624-36385924:- chr1:36361221:- chr1:36805225-36851525:- chr1:36826822:- OSCP1 ENSG00000116885.18 protein_coding - - chr1:36415827-36450451:- chr1:36438910:- chr1:36881428-36916052:- chr1:36904511:- chr1:36358991,chr1:36358994 chr1:36440715,chr1:36440715 NA NA chr1:36824592,chr1:36824595 chr1:36906316,chr1:36906316 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Organic_solute_transport_protein_1(83%) |Oscp1(57%) 11 17 15 162 196 ENST00000373132.4 ENST00000235532.9 upstream downstream duplicates(16),low_entropy(1),mismatches(4) CGGCCCCCCGGGAGGGAGAGCCGAGCAGCCCCGGCTCTGGGCTACGGACTATGGGCGAATAGCTCTGACCACCCGGCGAAG___AGCTGAGAATGAAGCGGAGAGCATCAGACAGAGGAGCTGGGGAAACGTCGGCCAGGGCCAAGGCTCTAGGAAGTGGGATTTCTGGAAATAATGCAAAGAGAGCTGGACCATTCATCCTTG|TTCTGAATGACATCATCTCCACCATGTTCAATAGAAAGTTTATGGAGGAATTATTCAAGCCTCAAGAGCTCTACTCCAAGAAGGCCCTGAGGACTGTCTATGAGCGCCTGGCTCATGCCTCCATTATGAAACTGAACCAGGCCAGCATGGATAAG___CTCTATGACCTGATGACCATGGCTTTCAAATATCAAGTATTGCTGTGTCCCCGACCCAAGGATGTGCTGCTGGTCACTTTCAATCACTTGGATACCATCAAGGGATTCATCCGAGACTCCCCAACCATCCTGCAGCAAGTGGACG MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFIL|vLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 40 CAMK SgK495 Q8N2I9 FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 36851324 FALSE 36904511 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17189 STK40::OSCP1 ENSG00000196182.11::ENSG00000116885.18 NCIH1341 SRR8615904 SRR8652143 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1664 TRUE 2990 TRUE 1137 STK40 ENSG00000196182.11 protein_coding - - chr1:36339624-36385924:- chr1:36385723:- chr1:36805225-36851525:- chr1:36851324:- OSCP1 ENSG00000116885.18 protein_coding - - chr1:36415827-36450451:- chr1:36438910:- chr1:36881428-36916052:- chr1:36904511:- chr1:36358991,chr1:36358994 chr1:36440715,chr1:36440715 NA NA chr1:36824592,chr1:36824595 chr1:36906316,chr1:36906316 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Organic_solute_transport_protein_1(83%) |Oscp1(57%) 1 7 3 113 196 ENST00000373132.4 ENST00000235532.9 upstream downstream duplicates(5),mismatches(2) GCGGCGGCGGCGGCTCGGGTGGCTGCGCTGGGAGGCGGCGGTGAGAGGCTCGCACGCCTCCAGCCCGGCCCCGGCCCCCCGGGAGGGAGAGCCGAGCAGCCCCGGCTCTGGGCTACGGACTATGGGCGAATAGCTCTGACCACCCGGCGAAG|TTCTGAATGACATCATCTCCACCATGTTCAATAGAAAGTTTATGGAGGAATTATTCAAGCCTCAAGAGCTCTACTCCAAGAAGGCCCTGAGGACTGTCTATGAGCGCCTGGCTCATGCCTCCATTATGAAACTGAACCAGGCCAGCATGGATAAG___CTCTATGACCTGATGACCATGGCTTTCAAATATCAAGTATTGCTGTGTCC...AGGGATTCATCCGAGACTCCCCAACCATCCTGCAGCAAGTGGACGAGACTTTGCGGCAGCTGACAGAA___ATATATGGTGGTCTCTCTGCAGGGGAGTTCCAGCTGATCCGGCAGACACTCCTCATCTTCTTCCAAGACCTGCACATCCGA___GTATCCATGTTTCTAAAGGACAAAGTTCAGAATAATAACGGTCGCTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 40 CAMK SgK495 Q8N2I9 FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 36851324 TRUE 36904511 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17190 STK40::OSCP1 ENSG00000196182.11::ENSG00000116885.18 NCIH1341 SRR8615904 SRR8652143 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2990 TRUE 1137 STK40 ENSG00000196182.11 protein_coding - - chr1:36339624-36385924:- chr1:36367852:- chr1:36805225-36851525:- chr1:36833453:- OSCP1 ENSG00000116885.18 protein_coding - - chr1:36415827-36450451:- chr1:36438910:- chr1:36881428-36916052:- chr1:36904511:- chr1:36358991,chr1:36358994 chr1:36440715,chr1:36440715 NA NA chr1:36824592,chr1:36824595 chr1:36906316,chr1:36906316 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Organic_solute_transport_protein_1(83%) |Oscp1(57%) 1 1 4 80 196 ENST00000482458.1 ENST00000235532.9 upstream downstream duplicates(1),mismatches(2) CTTCGGCAGTAAAAGTTTTACAGCACAATATATGTGCTCTGCTCTCCTCCCGCAATCCTGCTCCAAGAGATCTTAAGCTGGAGGCACCAGGTCTGAATTCCAGACTCCTCCCCACCACCCACACTTCACCTCCAACTGGAGCATGACCACAGACCCATTCAGGGAGGCTGGCGGACTCTTCATCCTGGACAGTCCCTTACTGTATGTCAA|TTCTGAATGACATCATCTCCACCATGTTCAATAGAAAGTTTATGGAGGAATTATTCAAGCCTCAAGAGCTCTACTCCAAGAAGGCCCTGAGGACTGTCTATGAGCGCCTGGCTCATGCCTCCATTATGAAACTGAACCAGGCCAGCATGGATAAG___CTCTATGACCTGATGACCATGGCTTTCAAATATCAAGTATTGCTGTGTCC...AGGTTCTTgTGAACTTTATGGAGAgCGAGTCCTGAAACTGGGAACTAACAT___GTACAGCGTGAATCAGCCTGTGGAAACTCATGTGTCTGGATCATCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 40 CAMK SgK495 Q8N2I9 FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 36851324 FALSE 36904511 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17217 PDE4D::DHX29 ENSG00000113448.21::ENSG00000067248.11 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- DHX29 ENSG00000067248.11 protein_coding - + chr5:55256055-55307694:- chr5:55270565:+ chr5:54551883-54603522:- chr5:54566393:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)| PDE4_UCR(8%)| 26 25 23 1119 288 ENST00000502484.6 unknown upstream upstream duplicates(4),mismappers(4),mismatches(6) CAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___GTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|TGCTATGCCATACCTTTCTCTTGTGTACATTCGGAAACAGAAGCCATCTCTGACCCGCCCAGCTCTTCCCTGGCGCTGCAAAGCACTGGCTTTACTGACAAACGTCTCCACCAAAGAACTCATCTGACTGCTTTCATGGTACCTAAAGAAATGTTTTAGGAGAGAATATGTAGATAATTGACTTAAGTCAAAATTGGAAAAAGCTGGATTTGACTCTTACAACTAAGTTAAA SDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATIT|vlchtfllctfgnrshl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17218 ATF7::LRIG3-DT ENSG00000170653.19::ENSG00000257443.2 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATF7 ENSG00000170653.19 protein_coding - - chr12:53507856-53626410:- chr12:53531744:- chr12:53901640-54020194:- chr12:53925528:- LRIG3-DT ENSG00000257443.2 lncRNA + - chr12:58920639-59065312:+ chr12:58982775:- chr12:59314420-59459093:+ chr12:59376556:- chr12:53528584,chr12:53528593 chr12:58999801,chr12:58999807 NA NA chr12:53922368,chr12:53922377 chr12:59393582,chr12:59393588 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none zf-C2H2(100%)| 12 13 17 237 60 ENST00000548446.6 unknown upstream downstream duplicates(5),mismatches(8) CCCTGGCCCACCAGTTAACAGTAGTGGCTCCATTTCTCCCTCTGGCCACCCTATACCATCAGAAGCCAAGATG___AGACTGAAAGCCACCCTAACTCACCAAGTCTCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGTACTGCCAGCACCATGGTGACAGCCCGCCCAGAGCAGAGCCAGATTCTCATCCAGCACCCTGATGCCCCATCCCCTGCCCAGCCACAG|GCAATTTAATATGGAAGTTACAAAGAGGAGCAAATGACTGTCAGAGAAGACTTCATAGAAGAGACAACGGAACATTCAAGGATGAGTAGTAGTTTGCCAGACATAAAAAGAAGCAAAAATAATAGTATTCTTTGTTGATAACAATAGTGATCACTAACATTCATTGAGAGCTTGCCAT PGPPVNSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTASTMVTARPEQSQILIQHPDAPSPAQPQ|ai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17219 ATF7-NPFF::LRIG3-DT ENSG00000267281.3::ENSG00000257443.2 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATF7-NPFF ENSG00000267281.3 protein_coding - - chr12:53506691-53625979:- chr12:53531744:- chr12:53900475-54019763:- chr12:53925528:- LRIG3-DT ENSG00000257443.2 lncRNA + - chr12:58920639-59065312:+ chr12:58982775:- chr12:59314420-59459093:+ chr12:59376556:- chr12:53528584,chr12:53528593 chr12:58999801,chr12:58999807 NA NA chr12:53922368,chr12:53922377 chr12:59393582,chr12:59393588 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none zf-C2H2(100%)| 12 13 17 237 60 ENST00000591834.1 unknown upstream downstream duplicates(5),mismatches(8) CCCTGGCCCACCAGTTAACAGTAGTGGCTCCATTTCTCCCTCTGGCCACCCTATACCATCAGAAGCCAAGATG___AGACTGAAAGCCACCCTAACTCACCAAGTCTCCTCAATCAATGGTGGTTGTGGAATGGTGGTGGGTACTGCCAGCACCATGGTGACAGCCCGCCCAGAGCAGAGCCAGATTCTCATCCAGCACCCTGATGCCCCATCCCCTGCCCAGCCACAG|GCAATTTAATATGGAAGTTACAAAGAGGAGCAAATGACTGTCAGAGAAGACTTCATAGAAGAGACAACGGAACATTCAAGGATGAGTAGTAGTTTGCCAGACATAAAAAGAAGCAAAAATAATAGTATTCTTTGTTGATAACAATAGTGATCACTAACATTCATTGAGAGCTTGCCAT PGPPVNSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTASTMVTARPEQSQILIQHPDAPSPAQPQ|ai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17220 PUS1::GLIPR1L2 ENSG00000177192.14::ENSG00000180481.11 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PUS1 ENSG00000177192.14 protein_coding + + chr12:131929200-131945896:+ chr12:131930135:+ chr12:132413745-132430441:+ chr12:132414680:+ GLIPR1L2 ENSG00000180481.11 protein_coding + - chr12:75391089-75432688:+ chr12:75394759:- chr12:75784869-75826468:+ chr12:75788539:- chr12:131931916 chr12:75404047 NA NA chr12:132416461 chr12:75797827 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 8 12 6 355 54 ENST00000376649.8 unknown downstream downstream duplicates(2),inconsistently_clipped(1),mismatches(1) CGCCGCCCGCCGGAGCCGCATGCCCCCAGGACCGGAGGTCCTGCAGCGGCCGGGCCGGGGGCGACCGCGTCTGGGAGGACGGAGAACATCCGGCGAAGAAGCTCAAGAGCGGTGGCGACGAGGAGCGGCGCGAGAAGCCGCCCAAGCGGAAGATCGTGCTGCTCATGGCCTATTCGGGCAAGGGCTACCACGGCATGCAG|AAATACAAAAATACATCTCAAAATTCGTAAAAAATCTGAAAGGACCCTGTATGGCCAAAATAATCTTGAAGAAGATGAAAAAAGTTGAAGAATGCACACTTCCTAATTTCTACTTACCAGTATTCTACAGTAATCATTGTGGAACTATTAATAGCATACAGACATATTAGACTAACAGAATGGAATAGAGGGCCCCAAAATAAATGCCAG PPAGAACPQDRRSCSGRAGGDRVWEDGEHPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQ|kykntsqns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17222 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55279533:+ chr5:54529762-54591029:+ chr5:54575361:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)| PDE4_UCR(8%)| 0 9 10 1119 97 ENST00000502484.6 ENST00000506435.1 upstream upstream mismappers(9) CCTCCATTGCCAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___GTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|GCTCTCGCTCTGTTGACCAGGCTGGAGTGCAGTGGCGCTACCACAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGCAATCCTCCACCTCAGCCTTGCAAGCAGATGGGACTATAG___GACAGTGGCATACTATCACATCTATCAAAGAAAATGTGAAAAGTGCCTGAAATGTGCTACTGATCAACCAATAGCAGTGAAAACTCAC SIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATIT|gsrsvdqagvqwryhsslqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17223 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55278592:+ chr5:54529762-54591029:+ chr5:54574420:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)| PDE4_UCR(8%)| 1 1 11 1119 64 ENST00000502484.6 unknown upstream upstream none CCTGTATCGATCCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___...AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|TGCAGTAAGAAGATACTGTATAGGATGGTTTGAAATTATATTTGAAGCATAGCTAATCCAGATGGTCAAGAAGGCTACTAAGACAAAT RSPMCNQPSINKATIT|vq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17224 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55283028:+ chr5:54529762-54591029:+ chr5:54578856:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)| PDE4_UCR(8%)| 1 5 5 1119 132 ENST00000502484.6 ENST00000506435.1 upstream upstream none AAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|GACAGTGGCATACTATCACATCTATCAAAGAAAATGTGAAAAGTGCCTGAAATGTGCTACTGATCAACCAATAGCAGTGAAAACTCACATATGGTACACATTCCATTTGGATCACAAAAGCAAAG NNFAALTNLQDRAPSKRSPMCNQPSINKATIT|gqwhtitsikenvksa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17225 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55283770:+ chr5:54529762-54591029:+ chr5:54579598:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)| PDE4_UCR(8%)| 0 1 2 1119 315 ENST00000502484.6 ENST00000506435.1 upstream upstream none CAaAAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|CCAAACATCTCGGTAAGTGGGAGGAAGTAACTGATGAACTGACTAAAGGAAAAACAGAG___ACTCTGGGCTTGGTCATGTGACTTACTTCAGTCAATGGGACATTAGCAAGAATAATAAAG KRSPMCNQPSINKATIT|akhlgkweevtdeltkgktetlglvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17226 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59275338:- chr5:58264865-59817947:- chr5:58571164:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55279533:+ chr5:54529762-54591029:+ chr5:54575361:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 1 616 97 ENST00000503258.5 ENST00000506435.1 upstream upstream mismappers(2) CTTTGCTCCACGGAGAGGAGTGTTTTCCTGTGCTTGCCCTGAAATGGAACTTCCTTGACAGCTCTCCCGTGTTACAGTACCTCCCGGTCATTTTCTTTTTC...CAAGCAGCCTCCCTTGGAAATGGAATATCTTTAAAATCTTCTTTGCAGAAAGACAGTTAGAATGTATTAATCAGAATAGTTGAAGACTTATTTTCCTTTTTATTTTTTTTCAAAATGAGCATTATTATGAAGCCAAGATCCCGATCTACAAGTTCCCTAAGGACTGCAGAGGCAGTTTG|GCTCTCGCTCTGTTGACCAGGCTGGAGTGCAGTGGCGCTACCACAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGCAATCC...GGGAGGAAGTAACTGATGAACTGACTAAAGGAAAAACAGAG___ACTCTGGGCTTGGTCATGTGACTTACTTCAGTCAATGGGACATTAGCAAGAATAATAAAG MSIIMKPRSRSTSSLRTAEAVw|lslc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17227 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2993 TRUE 1138 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59275338:- chr5:58264865-59817947:- chr5:58571164:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55283028:+ chr5:54529762-54591029:+ chr5:54578856:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 1 616 132 ENST00000503258.5 ENST00000506435.1 upstream upstream none CAAGCAGCCTCCCTTGGAAATGGAATATCTTTAAAATCTTCTTTGCAGAAAGACAGTTAGAATGTATTAATCAGAATAGTTGAcGACTTATTTTCCTTTTT...TAAGGACTGCAGAGGCAGTTTG|GACAGTGGCATACTATCACATCTATCAAAGAAAATGTGAAAAGTGCCTGAAATGTGCTACTGATCAACCAATAGCAGTGAAAACTCACATATGGTACACATTCCATTTGGATCACAAAAGCAAAG RTAEAVw|tvayyhiyqrkcekclkcatdqpiavkthiwytfhldhksk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17228 YAF2::LRRK2 ENSG00000015153.15::ENSG00000188906.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1665 TRUE 2994 TRUE 1139 YAF2 ENSG00000015153.15 protein_coding - - chr12:42157104-42238349:- chr12:42210355:- chr12:42550906-42632151:- chr12:42604157:- LRRK2 ENSG00000188906.17 protein_coding + + chr12:40196744-40369285:+ chr12:40294845:+ chr12:40590546-40763087:+ chr12:40688647:+ chr12:42173483,chr12:42173379,chr12:42173492,chr12:42173387,chr12:42173383 chr12:40294594,chr12:40294589,chr12:40294589,chr12:40294589,chr12:40294589 NA NA chr12:42567285,chr12:42567181,chr12:42567294,chr12:42567189,chr12:42567185 chr12:40688396,chr12:40688391,chr12:40688391,chr12:40688391,chr12:40688391 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion high none Zn-finger_in_Ran_binding_protein_and_others(100%)|C-terminal_of_Roc__COR__domain(100%),Leucine_Rich_repeats_(2_copies)(100%),Leucine_rich_repeat(100%),Protein_kinase_domain(100%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%) zf-RanBP(100%)|Arf(100%),COR(100%),LRR_4(100%),LRR_6(100%),LRR_8(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ras(100%),Roc(100%) 6 6 5 59 76 ENST00000547254.5 ENST00000298910.12 upstream upstream mismatches(3) CAGATCCACATTGTTTGAAGTTATTGTGAG?GCCTCGAGGACCAAGGAACCGTTGAAATTTCCAATTTCAGGAAG___TTCCAGTGGATGCCCATCAGGAAGATTCTCATGCTGAACAGAAGGGCAAGAGAGGTGGATCTGTGAGGGAAAAGACCCAATAGGATAACTCAAGTTACTG|GGGCCCATTTTTGATCATGAAGATTTACTGAAGCGAAAAAGAAAAATATTATCTTCAGATGATTCACTCA___GGTCATCAAAACTTCAATCCCATATGAGGCATTCAGACAGCATTTCTTCTCTGGCTTCTGAGAGAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Leucine-rich repeat serine/threonine-protein kinase 2 TKL LRRK Q5S007 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17229 YAF2::LRRK2 ENSG00000015153.15::ENSG00000188906.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2994 TRUE 1139 YAF2 ENSG00000015153.15 protein_coding - - chr12:42157104-42238349:- chr12:42235614:- chr12:42550906-42632151:- chr12:42629416:- LRRK2 ENSG00000188906.17 protein_coding + + chr12:40196744-40369285:+ chr12:40294845:+ chr12:40590546-40763087:+ chr12:40688647:+ chr12:42173483,chr12:42173379,chr12:42173492,chr12:42173387,chr12:42173383 chr12:40294594,chr12:40294589,chr12:40294589,chr12:40294589,chr12:40294589 NA NA chr12:42567285,chr12:42567181,chr12:42567294,chr12:42567189,chr12:42567185 chr12:40688396,chr12:40688391,chr12:40688391,chr12:40688391,chr12:40688391 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site inversion high none Zn-finger_in_Ran_binding_protein_and_others(100%)|C-terminal_of_Roc__COR__domain(100%),Leucine_Rich_repeats_(2_copies)(100%),Leucine_rich_repeat(100%),Protein_kinase_domain(100%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%) zf-RanBP(100%)|Arf(100%),COR(100%),LRR_4(100%),LRR_6(100%),LRR_8(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ras(100%),Roc(100%) 2 5 5 46 76 ENST00000555248.2 ENST00000298910.12 upstream upstream mismatches(2) GAAACAGGCTGAATACCTGGCACCTGGAAGAAGAAGGAATATAGTACACAGGGGAGTTGGCCCAGGACAGAGAAGTGGGCCTAGTTTAAAAGAGGCTTGAGGCCCACATGGGGGCCCCTGACATTTTTTTTTTTTACCAGTACATCTAAGCTCTTGTAGATCCAATTTTTAGTGGTGGAAACATTACTTGAGGAGGACTCAGAGAAGCATTGTCATTTGGATTGAAACTGAAGAGGCTCTGGGCAACTCACCAGAAATCTAAGGGACACTGTGTTCCTGAAA|GGGCCCATTTTTGATCATGAAGATTTACTGAAGCGAAAAAGAAAAATATTATCTTCAGATGATTCACTCA___GGTCATCAAAACTTCAATCCCATATGAGGCATTCAGACAGCATTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Leucine-rich repeat serine/threonine-protein kinase 2 TKL LRRK Q5S007 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17230 YAF2::LRRK2 ENSG00000015153.15::ENSG00000188906.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2994 TRUE 1139 YAF2 ENSG00000015153.15 protein_coding - - chr12:42157104-42238349:- chr12:42237599:- chr12:42550906-42632151:- chr12:42631401:- LRRK2 ENSG00000188906.17 protein_coding + + chr12:40196744-40369285:+ chr12:40294845:+ chr12:40590546-40763087:+ chr12:40688647:+ chr12:42173483,chr12:42173379,chr12:42173492,chr12:42173387,chr12:42173383 chr12:40294594,chr12:40294589,chr12:40294589,chr12:40294589,chr12:40294589 NA NA chr12:42567285,chr12:42567181,chr12:42567294,chr12:42567189,chr12:42567185 chr12:40688396,chr12:40688391,chr12:40688391,chr12:40688391,chr12:40688391 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Zn-finger_in_Ran_binding_protein_and_others(100%)|C-terminal_of_Roc__COR__domain(100%),Leucine_Rich_repeats_(2_copies)(100%),Leucine_rich_repeat(100%),Protein_kinase_domain(100%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%) zf-RanBP(100%)|Arf(100%),COR(100%),LRR_4(100%),LRR_6(100%),LRR_8(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ras(100%),Roc(100%) 2 4 4 310 76 ENST00000534854.7 ENST00000298910.12 upstream upstream mismatches(1) AGAAGAGCCCCACCAG___GCCGAAGCGGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCG|GGGCCCATTTTTGATCATGAAGATTTACTGAAGCGAAAAAGAAAAATATTATCTTCAGATGATTCACTCA___GGTCATCAAAACTTCAATCCCATATGAGGCATTCAGACAGCATTTCTTCTCTGGCTTCTGAGAGAGAATATATTACATCACTAGACCTTTCA KSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTr|gpflimkiy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Leucine-rich repeat serine/threonine-protein kinase 2 TKL LRRK Q5S007 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17231 YAF2::LRRK2 ENSG00000015153.15::ENSG00000188906.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2994 TRUE 1139 YAF2 ENSG00000015153.15 protein_coding - - chr12:42157104-42238349:- chr12:42199136:- chr12:42550906-42632151:- chr12:42592938:- LRRK2 ENSG00000188906.17 protein_coding + + chr12:40196744-40369285:+ chr12:40294845:+ chr12:40590546-40763087:+ chr12:40688647:+ chr12:42173483,chr12:42173379,chr12:42173492,chr12:42173387,chr12:42173383 chr12:40294594,chr12:40294589,chr12:40294589,chr12:40294589,chr12:40294589 NA NA chr12:42567285,chr12:42567181,chr12:42567294,chr12:42567189,chr12:42567185 chr12:40688396,chr12:40688391,chr12:40688391,chr12:40688391,chr12:40688391 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site inversion high none Zn-finger_in_Ran_binding_protein_and_others(100%)|C-terminal_of_Roc__COR__domain(100%),Leucine_Rich_repeats_(2_copies)(100%),Leucine_rich_repeat(100%),Protein_kinase_domain(100%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%) zf-RanBP(100%)|Arf(100%),COR(100%),LRR_4(100%),LRR_6(100%),LRR_8(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ras(100%),Roc(100%) 1 2 5 12 76 ENST00000552109.5 ENST00000298910.12 upstream upstream mismatches(1) GGAAGAGAGCCTGGTTACCATTTGGTGGAACAATCCTGCTGGCTCAAGCCTCTGCCTAGAAATTTGGGTCATTCTCTTTTTTGGACAGTCTG|GGGCCCATTTTTGATCATGAAGATTTACTGAAGCGAAAAAGAAAAATATTATCTTCAGATGATTCACTCA___GGTCATCAAAACTTCAATCCCATATGAGGCATTCAGACAGCATTTCTTCTCTGGCTTCTGAGAGAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Leucine-rich repeat serine/threonine-protein kinase 2 TKL LRRK Q5S007 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17232 C7orf50::MAD1L1 ENSG00000146540.15::ENSG00000002822.16 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 1666 FALSE NA FALSE NA C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1127257:- chr7:1036622-1177896:- chr7:1166893:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1980541:- chr7:1855429-2272878:- chr7:2020176:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Mitotic_checkpoint_protein(36%) |MAD(39%) 7 3 7 469 181 ENST00000357429.10 ENST00000406869.5 upstream downstream low_entropy(1),mismatches(2) AGGTGGGCGCAG___GATGGCAAAACAGAAGAGAAAAGTTCCTGAAGTGACAGAGAAAAAGAACAAAAAGCTGAAGAAGGCGTCAGCAGAGGGGCCACTGCTGGGCCCTGAGGCTGCACCAAGTGGCGAAGGAGCCGGCTCCAAG|CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAG___GTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGC MAKQKRKVPEVTEKKNKKLKKASAEGPLLGPEAAPSGEGAGSK|LEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4655 chr7:1844180-1844253:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Esophageal carcinoma,Uterine Carcinosarcoma UTERUS,OESOPHAGUS,UTERUS no_match 1166893,1166893|1067894,1166893|1166893 TRUE,TRUE|FALSE,TRUE|TRUE 2041756,1855864|1855864,1855864|1938026 FALSE,FALSE|FALSE,FALSE|FALSE YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17233 C7orf50::ENSG00000286192 ENSG00000146540.15::ENSG00000286192.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1127257:- chr7:1036622-1177896:- chr7:1166893:- ENSG00000286192 ENSG00000286192.1 protein_coding - - chr7:1815804-2242215:- chr7:1980541:- chr7:1855440-2281850:- chr7:2020176:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none none |MAD(39%) 7 3 7 469 181 ENST00000357429.10 ENST00000651235.1 upstream downstream low_entropy(1),mismatches(2) AGGTGGGCGCAG___GATGGCAAAACAGAAGAGAAAAGTTCCTGAAGTGACAGAGAAAAAGAACAAAAAGCTGAAGAAGGCGTCAGCAGAGGGGCCACTGCTGGGCCCTGAGGCTGCACCAAGTGGCGAAGGAGCCGGCTCCAAG|CTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAG___GTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGC MAKQKRKVPEVTEKKNKKLKKASAEGPLLGPEAAPSGEGAGSK|lemelkmlksqsssaeqsflfsreeadtlrlkveelegersrleeekrmleaqlerr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17234 WWOX::ADAMTS18 ENSG00000186153.19::ENSG00000140873.16 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ ADAMTS18 ENSG00000140873.16 protein_coding - + chr16:77247813-77435034:- chr16:77382839:+ chr16:77281710-77468931:- chr16:77416736:+ chr16:78176527,chr16:78176524 chr16:77373592,chr16:77373586 NA NA chr16:78210424,chr16:78210421 chr16:77407489,chr16:77407483 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none WW_domain(100%),short_chain_dehydrogenase(33%)| KR(15%),WW(100%),adh_short(4%),adh_short_C2(15%)| 5 6 4 42 10 ENST00000683929.1 unknown downstream upstream mismatches(1) TCAGGAATAG___GGTTCGAAACCGCCAAGTCTTTTGCCCTCCATGGTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG|GCTTTGCTGCTGGGTCTGCTAATAACACTCCTCTTCACACGTCAGCATCCTTGGAAAGCGGCGGCTTGAATGTCTGGGAGGAGAAGATCCTACCTCATATCCAT___GAGGAAGAGGAGGAGGTGGAGGAGCAAAAAAACGTGA SGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEW|alllgllitllftrqhpwkaaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17237 TSPAN5::DNAJB14 ENSG00000168785.8::ENSG00000164031.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2996 TRUE 1140 TSPAN5 ENSG00000168785.8 protein_coding - - chr4:98470367-98658611:- chr4:98658146:- chr4:99391518-99579762:- chr4:99579297:- DNAJB14 ENSG00000164031.17 protein_coding - - chr4:99896248-99946618:- chr4:99930621:- chr4:100817405-100867775:- chr4:100851778:- chr4:98531486,chr4:98531493 chr4:99933365,chr4:99933369 NA NA chr4:99452637,chr4:99452644 chr4:100854522,chr4:100854526 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Tetraspanin_family(5%)|DnaJ_domain(100%),Domain_of_unknown_function_(DUF1977)(100%) Tetraspanin(0%)|DUF1977(100%),DnaJ(100%) 4 3 2 118 315 ENST00000305798.8 ENST00000442697.7 upstream downstream none CCGGGGCAAGTGTCTTCATGAACCCAGAGGATGTCCGGGAAGCACTACAAGGGTCCTGAAGTCAGTTGTTGCATCAAATACTTCATATTTGGCTTCAATGTCATATTTTGG|CACTATTGGAAATAATTATGAAAAATGGAAGCACGGCTGGAAATAGCCCTCATTGCCGAAAACCATCAGGTAGTGGCGATCAAAGCAAGCCTAATTGCACAAAGGACAGCACATCTGGTAGTGGTGAAGGTGGAAAAGGC MSGKHYKGPEVSCCIKYFIFGFNVIFW|hywk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17238 TSPAN5::DNAJB14 ENSG00000168785.8::ENSG00000164031.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2996 TRUE 1140 TSPAN5 ENSG00000168785.8 protein_coding - - chr4:98470367-98658611:- chr4:98574457:- chr4:99391518-99579762:- chr4:99495608:- DNAJB14 ENSG00000164031.17 protein_coding - - chr4:99896248-99946618:- chr4:99930621:- chr4:100817405-100867775:- chr4:100851778:- chr4:98531486,chr4:98531493 chr4:99933365,chr4:99933369 NA NA chr4:99452637,chr4:99452644 chr4:100854522,chr4:100854526 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none Tetraspanin_family(5%)|DnaJ_domain(100%),Domain_of_unknown_function_(DUF1977)(100%) Tetraspanin(45%)|DUF1977(100%),DnaJ(100%) 1 1 2 2 315 ENST00000511651.5 ENST00000442697.7 upstream downstream none GACAAAGACCATTTAAATGGATTACAAAAAGCAGACTTCACCAGGCAGAGCGGCCTCTAACTTCTTCAGTAATGaTGCCATTTACCATGTGTCTGTTGGGG...CTTGGATGAAGCACTGCAGCTTATGCTAAGAAGATCAAGGCCCTGTTAGACTGGAAACATTCATTGTAAGACCTAGTGCCATAAG|CACTATTGGAAATAATTATGAAAA...GAAAgAGCCCTCATTGCCGAAAACCATCAGGTAGTGGCGATCAAAGCAAGCCTAATTGCACAAAGGACAGCACATCTGGTAGTGGTGAAGGTGGAAAAGGCTATACCAAAGACCAAGTAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17241 FBXO4::NIPBL ENSG00000151876.13::ENSG00000164190.19 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXO4 ENSG00000151876.13 protein_coding + + chr5:41925254-41941743:+ chr5:41934308:+ chr5:41925356-41941845:+ chr5:41934410:+ NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:37063790:+ chr5:36876871-37066515:+ chr5:37063892:+ chr5:41939337,chr5:41939338 chr5:37061959,chr5:37061957 NA NA chr5:41939439,chr5:41939440 chr5:37062061,chr5:37062059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none F-box_domain(100%)| F-box(100%),F-box-like(100%)| 2 4 2 76 260 ENST00000281623.8 ENST00000282516.13 downstream upstream mismatches(2) GAGATAGAGCAAGGGAAGAGCATACAAGTGCAGTTAACAAGATGTTCAGTCGACACAATGAAGGTGATGATCAACAAGGAAGCCGGTACAGTGTGATTCCACAGATTCAAAAAGTGTGTGAAGTTGTAGATGGGTTCATCTATGTTGCAAATGCTGAAGCTCATAAAA|TTCAAACTTCTCATGGAACATCTGGACCCTGATGAAGAAGAAGAAGAAGGGGAGGTTTCAGCTAGCACAAATGCTCGGAACAAAGCAATTACCTCACTGCTTGGAGGAGGCAGCCCTAAAAATAATACAGCAGCAGAGACAGAAGATGATGAAAG DRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHK|iqtshgtsgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17242 CCSER1::MMRN1 ENSG00000184305.16::ENSG00000138722.10 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90127831:+ chr4:91048545-92526446:+ chr4:91048982:+ MMRN1 ENSG00000138722.10 protein_coding + + chr4:89879532-89954629:+ chr4:89951605:+ chr4:90800683-90875780:+ chr4:90872756:+ chr4:90285671,chr4:90285671 chr4:89949879,chr4:89949876 NA NA chr4:91206822,chr4:91206822 chr4:90871030,chr4:90871027 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C1q_domain(100%),EGF-like_domain(100%) |C1q(100%),EGF(100%),hEGF(100%) 4 1 1 62 28 ENST00000509176.6 ENST00000394980.5 downstream upstream none TGCCAATCCGCCTCTCCTCTCTCTCTCTCTCTGTCTCAACATGACTGACTGGGAAGCGGTGGCTCGGGCAGAGCAGCTCCGCTGGCGCAGGCAGGAGGAGCAGGAGGATTATTAAATAAaGCAGgTGGACTCTGTGCAACTGGGAGTGGAGAGGAGCCCAACAGCCGAGAAGGGGAGGGAGGGCAGAGGAGGGGGACCAGGAAGGACACCCCCGTGCCCCGAAGACATAAATCCCTGAGTGCCCGGGAGGAGCCTTAACAAGCGCACGGAGCCCTCAAG|AGGAGTATTCAAGCTGTAGTCGGCATCCGTGCCAAAATGGGGGCACGTGCATAAATGGAAGAACTAGCTTTACCTGTGCCTGCAGACATCCTTTTACTGGTGACAACTGCACTATCAAGCTTGTGGAAGAAAATGCTTTAGCTCCAG___ATTTTTCCAAAGGATCTTACAGATATGCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17243 GRB14::COBLL1 ENSG00000115290.11::ENSG00000082438.18 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2998 TRUE 1141 GRB14 ENSG00000115290.11 protein_coding - - chr2:164492417-164621482:- chr2:164619687:- chr2:165348927-165477992:- chr2:165476197:- COBLL1 ENSG00000082438.18 protein_coding - - chr2:164653624-164843679:- chr2:164743875:- chr2:165510134-165700189:- chr2:165600385:- chr2:164576683,chr2:164576688 chr2:164769319,chr2:164769321 NA NA chr2:165433193,chr2:165433198 chr2:165625829,chr2:165625831 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Ras_association_(RalGDS/AF-6)_domain(2%)|Cordon-bleu_ubiquitin-like_domain(100%) RA(0%)|Cobl(100%) 1 1 1 171 39 ENST00000263915.8 ENST00000652658.2 upstream downstream duplicates(4),mismappers(1) GAAAGATCTTGATGTTCCGGAAATGCCATCTATTCCAAACCCTTTTCCTGAGCTATGCTGTTCTCCAaTTACATCTGTGTTGTCAGCAGACCTATTTCCCAAAGCAAATTCAAGGAAAAAACAG|GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCA KDLDVPEMPSIPNPFPELCCSPiTSVLSADLFPKANSRKKQ|ektksqgttsss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17244 GRB14::COBLL1 ENSG00000115290.11::ENSG00000082438.18 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 2998 TRUE 1141 GRB14 ENSG00000115290.11 protein_coding - - chr2:164492417-164621482:- chr2:164619687:- chr2:165348927-165477992:- chr2:165476197:- COBLL1 ENSG00000082438.18 protein_coding - - chr2:164653624-164843679:- chr2:164730115:- chr2:165510134-165700189:- chr2:165586625:- chr2:164576683,chr2:164576688 chr2:164769319,chr2:164769321 NA NA chr2:165433193,chr2:165433198 chr2:165625829,chr2:165625831 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Ras_association_(RalGDS/AF-6)_domain(2%)|Cordon-bleu_ubiquitin-like_domain(100%) RA(0%)|Cobl(100%) 0 0 0 171 70 ENST00000263915.8 ENST00000652658.2 upstream downstream mismatches(1) AGCAAATTCAAGGAAAAAACAG|TAAACCTATGATGGACTTGTTGATATTCCTTTGTGCACAGTATCACTTAAATCCATCAAGTTACACAATCGATCTGTTGTCAGCTGAACAGAAC ANSRKKQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17245 SPC24::KLK6 ENSG00000161888.12::ENSG00000167755.15 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPC24 ENSG00000161888.12 protein_coding - + chr19:11131520-11155807:- chr19:11143341:+ chr19:11242196-11266483:- chr19:11254017:+ KLK6 ENSG00000167755.15 protein_coding - - chr19:50958631-50969673:- chr19:50968591:- chr19:51461887-51472929:- chr19:51471847:- chr19:11144250 chr19:50968829 NA NA chr19:11254926 chr19:51472085 NA NA antisense sense unknown intron 5'UTR/splice-site inversion/3'-3' high none |Trypsin(100%) |DUF1986(100%),Trypsin(100%),Trypsin_2(100%) 2 1 0 4 6 unknown ENST00000597379.5 downstream downstream none GTCTCTTCCTTGGGGAAACTGAGGCCCAG___GGCACTCAGAGCTGCAGTTTGCAGGACGAGAGGGAGACGTGCCC-ATCCCCCCATCCCAGGACGCTCAGCCGTGCGTGGGCTGGGCCCACTCCACTCCCGGCGCCCACAGTTGCCCCAGTGAACCGGCCAGTGGAGGCATCCTGTCCCGTGTGCGGGAAAGGAATGACCGCCAAG|CTGTTCCTTCCCCCGACTCAAGAATCCCCGGA[g]GCCCGGAGGCCTGCAGCAG___GAGCGGCCATGAAGAAGCTGATGGTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17275 MRPL4::ICAM1 ENSG00000105364.14::ENSG00000090339.9 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MRPL4 ENSG00000105364.14 protein_coding + + chr19:10251901-10260055:+ chr19:10254640:+ chr19:10362577-10370731:+ chr19:10365316:+ ICAM1 ENSG00000090339.9 protein_coding + + chr19:10271093-10286615:+ chr19:10283481:+ chr19:10381769-10397291:+ chr19:10394157:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ribosomal_protein_L4/L1_family(15%)|Intercellular_adhesion_molecule_(ICAM)__N-terminal_domain(5%) Ribosomal_L4(28%)|ICAM_N(0%) 1 0 2 355 28 ENST00000307422.9 ENST00000264832.8 downstream upstream duplicates(1) CTCGCaAGGCTCCAGTGGCCTTGACCTCCCGCGGCGTGGGAGGCTGCGCGGCGATGCTGCAGTTCGTCCGGGCCGGGGCGCGGGCCTGGCTTCGGCCTACC...AGAAGAACTTCAAGAGAATT|GGACTCCAGAACGGGTGGAACTGGCACCCCTCCCCTCTTGGCAGCCAGTGGGCAAGAACCTTACCCTACGCTGCCAGGTGGAGGGTGGGGCACCCCGGGCCAACCTCACCGTGGTGCTGCTCCGTGGGGAGAAGGAGCTGAAACGGGAGCCAGCTGTGGGGGAGCCCGCTGAGGTCACGACCACGGTGCTGGTGAGGAGAG KNFKRI|glqngwnwhpsplgsqwartlpyaarwrvghpgptspwccsvgrrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17297 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1668 TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154170400:- chr1:154127784-154167124:- chr1:154142876:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156874571:+ chr1:156785428-156851642:+ chr1:156844363:+ chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman Tropomyosin(78%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%) CLZ(100%),Tropomyosin(62%),Tropomyosin_1(100%)|PK_Tyr_Ser-Thr(87%),Pkinase(82%),TrkA_TMD(100%) 77 81 124 2164 392 ENST00000271850.11 ENST00000674537.2 upstream upstream duplicates(22),low_entropy(2),mismatches(16),multimappers(1) CAGAGTC___CCGTTGCCGAGAGATGGATGAGCAGATTAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAG___TACTCTCAAAAAGAAGATAAATATGAGGAAGAAATCAAGATTCTTACTGATAAACTCAAGGAG___GCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAG|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGG ESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLE|dTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRNKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 TRUE|TRUE|TRUE,TRUE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 17298 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1669 TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154169305:- chr1:154127784-154167124:- chr1:154141781:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156874571:+ chr1:156785428-156851642:+ chr1:156844363:+ chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman Tropomyosin(85%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(100%) CLZ(100%),Tropomyosin(65%),Tropomyosin_1(100%)|PK_Tyr_Ser-Thr(87%),Pkinase(82%),TrkA_TMD(100%) 54 37 143 146 392 ENST00000651641.1 ENST00000674537.2 upstream upstream duplicates(20),low_entropy(10),mismatches(13) CCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAG___ATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCACGCCCTCAATGACATGACCTCTAT|ACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGG___GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACC___GCCCGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTC RAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSi|h* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 FALSE|FALSE|FALSE,FALSE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 17299 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154170400:- chr1:154127784-154167124:- chr1:154142876:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156874906:+ chr1:156785428-156851642:+ chr1:156844698:+ chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium Mitelman Tropomyosin(78%)|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(95%) CLZ(100%),Tropomyosin(62%),Tropomyosin_1(100%)|PK_Tyr_Ser-Thr(87%),Pkinase(82%),TrkA_TMD(18%) 1 1 82 2164 641 ENST00000271850.11 ENST00000674537.2 upstream upstream duplicates(7),mismatches(7) CTGAGTGCTGCTGAAGAAAAG___TACTCTCAAAAAGAAGATAAATATGAGGAAGAAATCAAGATTCTTACTGATAAACTCAAGGAG___GCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGACCTGGAAG|GTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACC___GCCCGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTGCATTTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGG LSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLE|glggcgpgrlclplpfyaapcaqqmwtekqvwdqppgcagsrgwaghvpafhdigwqlpvphr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 TRUE|TRUE|TRUE,TRUE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 17300 RNF125::RPRD1A ENSG00000101695.9::ENSG00000141425.18 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1670 FALSE NA FALSE NA RNF125 ENSG00000101695.9 protein_coding + + chr18:32018825-32073219:+ chr18:32042273:+ chr18:29598788-29653182:+ chr18:29622236:+ RPRD1A ENSG00000141425.18 protein_coding - - chr18:35984387-36067576:- chr18:35993300:- chr18:33564350-33647539:- chr18:33573263:- chr18:32045027 chr18:36019413 NA NA chr18:29624990 chr18:33599376 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none C2HC_Zing_finger_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|Cell-cycle_alteration_and_expression-elevated_protein_in_tumour(32%) zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-C3HC4_4(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%),zf_C2HC_14(100%)|CREPT(0%) 20 13 18 75 367 ENST00000217740.4 ENST00000399022.9 downstream downstream duplicates(2),mismatches(2) GCGGGCCCTGGAGCGCAGGAGGGACCCGGAGTTGCCCGTCACGTCCTTCGACTGCGCCGTGTGCCTTGAGGTGTTACACCAGCCTGTCCGGACCCGCTGTGGCCACGT___ATTCTGCCGTTCCTGTATTGCTACCAGTCTAAAGAACAACAAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCTTCAGAAGGAGTTCCAGCAACTGATGTAGCCAAAAGAATGAAATCAGAGTATAAGAACTGCGCTGAGTGTGACACCCTG___GTTTGCCTCAGTGAAATGAGGGCACATATTCGGACTTGTCAGAAGTACATAGATAAGTATGGACCACTACAAGAACTTGAGGAGACAGCAGCAAG|GAGTACAAGCGCAAGCTAGCCAGAGTTTCCCTGGTGCGCAAAGAACTCAGGTCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCCCAATGTCACTGGCAGCCACATGCACCTGCCCTTTGCGGGAGACATCTACAGTGAAGATTGATGGACCAGCCTCTTTCCAGGTCCCAGGACTTTGCAAGAGATGGAGACAGGTTAGGTGGATAGTCCTGTAGTGTTATTTTTGTATATTGTTGAGAAAGAAACA RALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAAr|stsas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17301 ENSG00000263917::RPRD1A ENSG00000263917.1::ENSG00000141425.18 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000263917 ENSG00000263917.1 lncRNA + + chr18:32018829-32111779:+ chr18:32042273:+ chr18:29598792-29691742:+ chr18:29622236:+ RPRD1A ENSG00000141425.18 protein_coding - - chr18:35984387-36067576:- chr18:35993300:- chr18:33564350-33647539:- chr18:33573263:- chr18:32045027 chr18:36019413 NA NA chr18:29624990 chr18:33599376 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Cell-cycle_alteration_and_expression-elevated_protein_in_tumour(32%) |CREPT(0%) 20 13 18 75 367 ENST00000583184.1 ENST00000399022.9 downstream downstream duplicates(2),mismatches(2) GCGGGCCCTGGAGCGCAGGAGGGACCCGGAGTTGCCCGTCACGTCCTTCGACTGCGCCGTGTGCCTTGAGGTGTTACACCAGCCTGTCCGGACCCGCTGTGGCCACGT___ATTCTGCCGTTCCTGTATTGCTACCAGTCTAAAGAACAACAAGTGGACCTGTCCTTATTGCCGGGCATATCTTCCTTCAGAAGGAGTTCCAGCAACTGATGTAGCCAAAAGAATGAAATCAGAGTATAAGAACTGCGCTGAGTGTGACACCCTG___GTTTGCCTCAGTGAAATGAGGGCACATATTCGGACTTGTCAGAAGTACATAGATAAGTATGGACCACTACAAGAACTTGAGGAGACAGCAGCAAG|GAGTACAAGCGCAAGCTAGCCAGAGTTTCCCTGGTGCGCAAAGAACTCAGGTCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCCCAATGTCACTGGCAGCCACATGCACCTGCCCTTTGCGGGAGACATCTACAGTGAAGATTGATGGACCAGCCTCTTTCCAGGTCCCAGGACTTTGCAAGAGATGGAGACAGGTTAGGTGGATAGTCCTGTAGTGTTATTTTTGTATATTGTTGAGAAAGAAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17309 CHEK2::HSCB ENSG00000183765.24::ENSG00000100209.11 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28741769:- chr22:29083731-29138410:- chr22:29137757:- HSCB ENSG00000100209.11 protein_coding + - chr22:28742039-28757515:+ chr22:28744915:- chr22:29138027-29153503:+ chr22:29140903:- chr22:28740179 chr22:28750226 NA NA chr22:29136167 chr22:29146214 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' medium none none HscB_4_cys(100%)| 0 5 0 133 21 ENST00000416671.5 unknown upstream downstream mismatches(1) GCGGAGAGTGTGCGGCTCCAGGTGGGCTCACGCG|AAATGGGGTGTCATCATGTTGCCCAGGATGGTCTTGAACTCCTGGGCTGAAGTGATCTGACCACCTCAGCCTCTGAAAGTTCTGGGATTACAGGTGTGAGCCACCATGCCTGACCTCAAGCACTCTTCTGCTGAATAAAGGGGACGTGGCTGTCCTACGCCATAATGGGCATCAGGACGTCATACACAGAAGTGTTGGGAAATCACCTTACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift FALSE NA NA NA NA NA NA NA NA NA 17355 UQCRH::PIK3R3 ENSG00000173660.12::ENSG00000117461.15 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UQCRH ENSG00000173660.12 protein_coding + + chr1:46303698-46316776:+ chr1:46310316:+ chr1:46769370-46782448:+ chr1:46775988:+ PIK3R3 ENSG00000117461.15 protein_coding - + chr1:46040140-46133036:- chr1:46053820:+ chr1:46505812-46598708:- chr1:46519492:+ chr1:46313290,chr1:46313410,chr1:46313290,chr1:46313288 chr1:46053354,chr1:46053351,chr1:46053361,chr1:46053349 NA NA chr1:46778962,chr1:46779082,chr1:46778962,chr1:46778960 chr1:46519026,chr1:46519023,chr1:46519033,chr1:46519021 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquinol-cytochrome_C_reductase_hinge_protein(84%)| UCR_hinge(2%)| 147 93 194 646 362 ENST00000311672.10 unknown downstream upstream duplicates(54),low_entropy(1),mismatches(10),multimappers(1) GCTTACCGAATCCGGAGATCCTGAGGAG___GAGGAAGAGGAAGAGGAGGAATTAGTG___GATCCCCTAACAACAGTGAGAGAGCAATGCGAGCAGTTGGAGAAATGTGTAAAGGCCCGGGAGCGGCTAGAGCTCTGTGATGAGCGTGTATCCTCTCGATCACATACAGAAGAGGATTGCACGGAGGAGCTCTTTGACTTCTTGCATGCGAGGGACCATTGC|GGCAAAGAAGGACTTCCATTCATTGTTTTGGTGTATAGCATAGCCTTTTTGAGCCTTTCTTCAGCTTCATGATGTGACCAGAACCACGTGAGCATTCCAAGAGCAGACACACCCCATTTACAGATAAGAGaACCCTCCTTGCCTTGTTTACAAAGCTCTTCAGTATGCTATATACACTTGGCTTGACTTTTGGCCACAATAGCA LTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHC|gkeglpfivlvysiaflslssas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17356 UQCRH::P3R3URF-PIK3R3 ENSG00000173660.12::ENSG00000278139.1 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UQCRH ENSG00000173660.12 protein_coding + + chr1:46303698-46316776:+ chr1:46310316:+ chr1:46769370-46782448:+ chr1:46775988:+ P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - + chr1:46043661-46176488:- chr1:46053820:+ chr1:46509333-46642160:- chr1:46519492:+ chr1:46313290,chr1:46313410,chr1:46313290,chr1:46313288 chr1:46053354,chr1:46053351,chr1:46053361,chr1:46053349 NA NA chr1:46778962,chr1:46779082,chr1:46778962,chr1:46778960 chr1:46519026,chr1:46519023,chr1:46519033,chr1:46519021 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquinol-cytochrome_C_reductase_hinge_protein(84%)| UCR_hinge(2%)| 147 93 191 646 362 ENST00000311672.10 unknown downstream upstream duplicates(54),low_entropy(1),mismatches(10),multimappers(1) GCTTACCGAATCCGGAGATCCTGAGGAG___GAGGAAGAGGAAGAGGAGGAATTAGTG___GATCCCCTAACAACAGTGAGAGAGCAATGCGAGCAGTTGGAGAAATGTGTAAAGGCCCGGGAGCGGCTAGAGCTCTGTGATGAGCGTGTATCCTCTCGATCACATACAGAAGAGGATTGCACGGAGGAGCTCTTTGACTTCTTGCATGCGAGGGACCATTGC|GGCAAAGAAGGACTTCCATTCATTGTTTTGGTGTATAGCATAGCCTTTTTGAGCCTTTCTTCAGCTTCATGATGTGACCAGAACCACGTGAGCATTCCAAGAGCAGACACACCCCATTTACAGATAAGAGaACCCTCCTTGCCTTGTTTACAAAGCTCTTCAGTATGCTATATACACTTGGCTTGACTTTTGGCCACA LTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSRSHTEEDCTEELFDFLHARDHC|gkeglpfivlvysiaflslssas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17357 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1671 TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767255:+ chr14:70193617-70238722:+ chr14:70233972:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Sushi_repeat_(SCR_repeat)(100%) |Sushi(100%) 124 139 133 2572 418 ENST00000553521.5 ENST00000342745.5 downstream upstream duplicates(79),mismatches(13) CGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCGGTAG|TGTGCCCCCTACCACCGGAGCCAGAGAATGGTGGCTACATCTGCCACCCCCGGCCCTGCAGAGACCCCCTGACAGCAGGCAGTGTCATCGAATACCTGTGTGCTGAAGGCTACATGTTGAAGGGCGATTACAAATACCTGACGTGTAAGAATGGCGAGTGGAAACCAGCCATGGAGATTAGCTGCCGTCTCAACGAGG___ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCAGCTCCGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17358 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1672 TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767251:+ chr14:70193617-70238722:+ chr14:70233968:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Sushi_repeat_(SCR_repeat)(100%) |Sushi(100%) 41 76 59 2572 418 ENST00000553521.5 ENST00000342745.5 downstream upstream duplicates(28),mismatches(6) GCTGCTAAGTGCGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCG|TGTGCCCCCTACCACCGGAGCCAGAGAATGGTGGCTACATCTGCCACCCCCGGCCCTGCAGAGACCCCCTGACAGCAGGCAGTGTCATCGAATACCTGTGTGCTGAAGGCTACATGTTGAAGGGCGATTACAAATACCTGACGTGTAAGAATGGCGAGTGGAAACCAGCCATGGAGATTAGCTGCCGTCTCAACGAGG___ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCAGCTCCGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17359 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767987:+ chr14:70193617-70238722:+ chr14:70234704:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Sushi_repeat_(SCR_repeat)(100%) |Sushi(100%) 0 2 137 19 418 ENST00000555412.1 ENST00000342745.5 downstream upstream duplicates(18),mismatches(5) GGCGTTGCGGTTGCTGCGGTCTGGGCCCAGTAGCGGACCGTGTTGGGAGGGAGCTGGGTTTTCATTTTGTCTGCAG|TGTGCCCCCTACCACCGGAGCCAGAGAATGGTGGCTACATCTGCCACCCCCGGCCCTGCAGAGACCCCCTGACAGCAGGCAGTGTCATCGAATACCTGTGTGCTGAAGGCTACATGTTGAAGGGCGATTACAAATACCTGACGTGTAAGAATGGCGAGTGGAAACCAGCCATGGAGATTAGCTGCCGTCTCAACGAGG___ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17360 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767380:+ chr14:70193617-70238722:+ chr14:70234097:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Sushi_repeat_(SCR_repeat)(100%) |Sushi(100%) 2 0 137 223 418 ENST00000394366.6 ENST00000342745.5 downstream upstream duplicates(18),mismatches(5) AGAGCTGCTAAGTGCGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCGGTAGGTGAGTGGCTCACTTTGAGGGCAAGCCTTCTCGGATCGAGGCTTCTTCATGGCCGCTCAGATCGTGAGCGGCCGGGGCTGCTCTCTTTGCGGAGGATGGCGTCTAATGAGCGCAGTTGATTCGAG|TGTGCCCCCTACCACCGGAGCCAGAGAATGGTGGCTACATCTGCCACCCCCGGCCCTGCAGAGACCCCCTGACAGCAGGCAGTGTCATCGAATACCTGTGTGCTGAAGGCTACATGTTGAAGGGCGATTACAAATACCTGACGTGTAAGAATGGCGAGTGGAAACCAGCCATGGAGATTAGCTGCCGTCTCAACGAGG___ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17361 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767255:+ chr14:70193617-70238722:+ chr14:70233972:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69704604:+ chr14:70078313-70181861:+ chr14:70171321:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 0 0 20 2572 863 ENST00000553521.5 ENST00000342745.5 downstream upstream duplicates(2),mismatches(3) GCTGCTAAGTGCGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCGGTAG|ATAAAGACACCCACACATCACTTGGGGTCCCCACGCTGTCTATAGTGGCTTCTACTGCCAGCTCCGTGGCGCTCATTCTCCTCCTCGTGGTGCTGTTTGTGCTGCTGCAGCCAAAGCTGAAGTCTTTCCATCATAGCAG___GCGTGACCAGGGGGTATCTGGGGACCAGGTCTCCATCATGGTGGATGGAGTCCAGGTTGCACTACCATCATACGAGGAGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17362 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767251:+ chr14:70193617-70238722:+ chr14:70233968:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69708677:+ chr14:70078313-70181861:+ chr14:70175394:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 1 0 1 2572 726 ENST00000553521.5 ENST00000342745.5 downstream upstream none GCCCTCCATTTTGTGGAGCGCCAGAGCTGCTAAGTGCGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCG|GCGTGACCAGGGGGTATCTGGGGACCAGGTCTCCATCATGGTGGATG...GGAGGCTGTATATGGCAGTTCTGGTCACTGTGTGCCACCTGCTGACCCCAGAGTACAGATTGTGCTGTCAGAAGGGTCTGGGCCCAGTGGGAGGAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17363 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767255:+ chr14:70193617-70238722:+ chr14:70233972:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69710954:+ chr14:70078313-70181861:+ chr14:70177671:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 0 2572 705 ENST00000553521.5 ENST00000342745.5 downstream upstream none TCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCGGTAG|ATATTCCACTGTTGAAAGAAGCATGAGGGCAGCGGC...CCTTTCCTCTCTGCGAGGTTCTCTCAGCCCTTCCTCCCTCTCCCTGTGGGATTGAGCACCCTGTACTCTCCAGCCACCTTACCTGGATACCTGAGCTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17365 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 1673 TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Per1-like_family(36%)|Gasdermin_PUB_domain(62%) Per1(21%)|Gasdermin_C(79%) 17 12 18 142 46 ENST00000579146.5 ENST00000418519.6 upstream downstream duplicates(1),low_entropy(1),mismatches(2) GGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTACCACACCTGTGTGGCCTTCGCCTGG|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAG___AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAG___GTGAAATCTGTCATGGAGCAGAACTGGG PFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAW|VSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17366 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 1674 TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Per1-like_family(36%)|Gasdermin_PUB_domain(100%),Gasdermin_pore_forming_domain(42%) Per1(21%)|Gasdermin(28%),Gasdermin_C(100%) 2 3 18 142 13 ENST00000579146.5 ENST00000418519.6 upstream downstream duplicates(1),mismatches(1) TGGCAAG___TGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCTTCGTGCCAGCCTCCTCCCCCATGTACCACACCTGTGTGGCCTTCGCCTGG|GAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTG...ACTCTGGAGACGGTAAAGtAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAG___GGCCAAAGGGAAGTGACCATC GKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAW|eaeegttlfipin* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17367 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39685922:- chr17:37827375-37853050:- chr17:37842175:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Per1-like_family(15%)|Gasdermin_PUB_domain(62%) Per1(12%)|Gasdermin_C(79%) 1 0 6 95 46 ENST00000579146.5 ENST00000418519.6 upstream downstream mismatches(1) GGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCTGAATCACTTCCGCTCCtGCCAGCCAATCTACATGAGTCTAGCAG___GCTGGACCTGTCGGGACGACTGTAAGTATGAGTGTATGTGGGTCACCGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAG|GTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAG___AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAG...___GTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGG VYRDCVLQCEEQNCSGGALNHFRScQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGK|VSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17368 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905496:- chr17:38060848-38076107:- chr17:38061749:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Per1-like_family(36%)|Gasdermin_PUB_domain(26%) Per1(21%)|Gasdermin_C(42%) 1 0 2 142 58 ENST00000579146.5 ENST00000418519.6 upstream downstream duplicates(1) ATGTGGGTCACCGTTGGGCTCTACCTCCAGGAAGGTCACAAAGTGCCTCAGTTCCATGGCAAG___TGGCCCTTCTCCCGGTTCCTGTTCTTTCAAGAGCCGGCATCGGCCGTGGCCTCGTTTCTCAATGGCCTGGCCAGCCTGGTGATGCTCTGCCGCTACCGCACCT...TGGCCTTCGCCTGG|AGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAG___GTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCG AFAW|sclkssslwlrpwrrgpflc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17369 ADK::ENOX1 ENSG00000156110.15::ENSG00000120658.14 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74398579:+ chr10:75910960-76469721:+ chr10:76158337:+ ENOX1 ENSG00000120658.14 protein_coding - + chr13:43213130-43786972:- chr13:43749450:+ chr13:43787266-44361108:- chr13:44323586:+ chr10:74429154,chr10:74429153 chr13:43646453,chr13:43646449 NA NA chr10:76188912,chr10:76188911 chr13:44220589,chr13:44220585 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none pfkB_family_carbohydrate_kinase(46%)| PfkB(38%)| 18 13 15 183 30 ENST00000673352.1 unknown downstream upstream duplicates(5) AAGCTGCTGAAGCCCATGTGGATGCTCATTACTACGAGCAGAATGAGCAGCCAACAGGAACTTGTGCTGCATGCATCACTGGTGACAACAG___GTCCCTCATAGCTAATCTTGCTGCTGCCAATTGTTATAAAAAGGAAAAACATCTTGATCTGGAGAAAAACTGGATGTTGGTAGAAAAAGCAAGAGTTTGTTATATAGCA|GTACAGAGAGGCACCTCTGTGCCCAAGGCTGGAGCTCACCTTGGAGAAGAGAGCCATGGAAATGCTGGGCTTGGTGACAACAGCAAGGACAACATCAGCATCAAGTAGCAAAGATGCACCTGTTTCCCAGCAGGGAACCAGCTTTGCTCCTCACGGGCAATTAGCAAGGTTTGACTTAATTTAAAGCCTACACAACCACTGATCTCTG AAEAHVDAHYYEQNEQPTGTCAACITGDNRSLIANLAAANCYKKEKHLDLEKNWMLVEKARVCYIA|vqrgtsvpkagahlgeeshgnaglgdnskdnisik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17379 ITCH::RALY ENSG00000078747.17::ENSG00000125970.12 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34492597:+ chr20:32951041-33099578:+ chr20:33080402:+ RALY ENSG00000125970.12 protein_coding + + chr20:33993646-34108308:+ chr20:34084661:+ chr20:32581452-32696114:+ chr20:32672467:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR duplication high none C2_domain(100%),HECT-domain_(ubiquitin-transferase)(81%),WW_domain(100%)| C2(100%),HECT(46%),WW(100%)|eIF-5_eIF-2B(100%) 3 3 5 213 88 ENST00000374864.10 ENST00000375114.7 downstream upstream duplicates(1) AAAGGAATTAGAG___GTCCTTTTATGTGGAATGCAAGAGATTGATTTGAATGACTGGCAAAGACATGCCATCTACCGTCATTATGCAAGGACCAGCAAACAAATCATGTGGTTTTGGCAG___TTTGTTAAAGAAATTGATAATGAGAAGAGAATGAGACTTCTGCAGTTTGTTACTGGAACCTGCCGATTGCCAGTAGGAGGATTTGCTGATCTCATGG|CTCTTGGGACCCAACCACCATGCTGTGAAGCAGCCCAGGCCACACAGAGAGGCCACGTGTACATGTTCAGCTGACAGCAGTATCAAATGTCAGACATGAGAGAGGAAGGCTTCAAGATGACTCCAGCCCAGCCACCGTCTGAGAACAAAGTAAGAACTGCCTCACTGATGCCATTCAAAGCCCAGCACCATGAGAGATAATAAAACGTTGTTTGAAGATGCTAA KELEVLLCGMQEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLM|algtqppcceaaqatqrghvymfs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-644a chr20:34466325-34466418:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus,Breast inexact TRUE Breast invasive carcinoma,Stomach adenocarcinoma,Skin Cutaneous Melanoma,Uterine Carcinosarcoma BREAST,STOMACH,SKIN,UTERUS inexact 33033266|32981687,33059320,32996598|32981687|32981687|32996598,33028149 FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE 32619328|32659872,32659872,32619328|32619328|32581528|32659872,32619328 FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17380 ENSG00000289720::RALY ENSG00000289720.1::ENSG00000125970.12 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000289720 ENSG00000289720.1 protein_coding + + chr20:34363271-34540923:+ chr20:34492597:+ chr20:32951077-33128727:+ chr20:33080402:+ RALY ENSG00000125970.12 protein_coding + + chr20:33993646-34108308:+ chr20:34084661:+ chr20:32581452-32696114:+ chr20:32672467:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR duplication high none none C2(100%),HECT(46%),WW(100%)|eIF-5_eIF-2B(100%) 3 3 5 213 88 ENST00000696979.1 ENST00000375114.7 downstream upstream duplicates(1) AAAGGAATTAGAG___GTCCTTTTATGTGGAATGCAAGAGATTGATTTGAATGACTGGCAAAGACATGCCATCTACCGTCATTATGCAAGGACCAGCAAACAAATCATGTGGTTTTGGCAG___TTTGTTAAAGAAATTGATAATGAGAAGAGAATGAGACTTCTGCAGTTTGTTACTGGAACCTGCCGATTGCCAGTAGGAGGATTTGCTGATCTCATGG|CTCTTGGGACCCAACCACCATGCTGTGAAGCAGCCCAGGCCACACAGAGAGGCCACGTGTACATGTTCAGCTGACAGCAGTATCAAATGTCAGACATGAGAGAGGAAGGCTTCAAGATGACTCCAGCCCAGCCACCGTCTGAGAACAAAGTAAGAACTGCCTCACTGATGCCATTCAAAGCCCAGCACCATGAGAGATAATAAAACGTTGTTTGAAGATGCTAA KELEVLLCGMQEIDLNDWQRHAIYRHYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLM|algtqppcceaaqatqrghvymfs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17382 DHDDS::CDH23 ENSG00000117682.18::ENSG00000107736.22 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHDDS ENSG00000117682.18 protein_coding + + chr1:26432282-26471306:+ chr1:26457905:+ chr1:26758773-26797797:+ chr1:26784396:+ CDH23 ENSG00000107736.22 protein_coding + - chr10:71396920-71815947:+ chr10:71790970:- chr10:73156677-73575704:+ chr10:73550727:- chr1:26458774,chr1:26458775,chr1:26458769 chr10:71794290,chr10:71794289,chr10:71794289 NA NA chr1:26785265,chr1:26785266,chr1:26785260 chr10:73554047,chr10:73554046,chr10:73554046 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Putative_undecaprenyl_diphosphate_synthase(82%)| Prenyltransf(64%)| 4 1 1 435 2 ENST00000236342.12 unknown downstream downstream duplicates(2) GTCCTGGGCGATCTGCACTTGTTGCCCTTGGATCTCCAGGAGCTGATTGCACAAGCTGTACAGGCCACGAAGAACTACAACAA___GTGTTTCCTGAATGTCTGTTTTGCATACACATCCCGTCATGAGATCAGCAATGCTGTGAGAGAGATGGCCTGGGGGGTGGAGCAAGGCCTGTTGGATCCCAG___TGATATCTCTGAGTCTCTGCTTGATAAGTGCCTCTATACCAACCGCTCTCCTCATCCTGACATCTTGATACGGACTTCTGGAGAAGTGCGGCTGAGTGACTTCTTGCTATGGCAG|GCTCAACCACCCGTGCTGAGGGAGGGCCCCATGCATTTCCTGTGGTTGTCCCCTCTGCAGGTGCCCTCTGCTGTCTTCAAGACTCTTGCCTGGGAAGAGTGACCCAGGGCACAGGGTTGAC VLGDLHLLPLDLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVREMAWGVEQGLLDPSDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQ|aqppvlregpmhflwlsplqvpsavfktlawee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17387 RMEL3::RUNX2 ENSG00000250961.2::ENSG00000124813.23 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3031 TRUE 1145 RMEL3 ENSG00000250961.2 lncRNA + + chr5:57395060-57534504:+ chr5:57496917:+ chr5:56690887-56830331:+ chr5:56792744:+ RUNX2 ENSG00000124813.23 protein_coding + + chr6:45328157-45664349:+ chr6:45663115:+ chr6:45295894-45632086:+ chr6:45630852:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 1 2 1 3 18 ENST00000506106.1 ENST00000576263.5 downstream upstream none GAAATCTACAGACATTCAATGAGGGGAGGATTTCGTTCCATCAGATGGGCTTCCTGACATAATTGCAAAG___TTAATATCAGCCCATGTGCTCCAAGAAAACCAGAGGAAATATCAAGAAAGAAGAAAACATGAGACCCTGAAAATAAAAACCTCAACCCAGAAG|ATTCAGAGCCCAGTACCTTGGACTCCCAGTCTTCGACCACCTTGTTCCTCTCCTCGGAGGAGCCAGGCCCCTCCACCGCCGCCCTGCCATCTCCCTCCTCCTCTTCCTGCGAGCCTCAGGCCTTTTCCCCAGGTCCGCCAGCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17388 RMEL3::RUNX2 ENSG00000250961.2::ENSG00000124813.23 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3031 TRUE 1145 RMEL3 ENSG00000250961.2 lncRNA + + chr5:57395060-57534504:+ chr5:57494225:+ chr5:56690887-56830331:+ chr5:56790052:+ RUNX2 ENSG00000124813.23 protein_coding + + chr6:45328157-45664349:+ chr6:45663115:+ chr6:45295894-45632086:+ chr6:45630852:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 0 1 1 15 18 ENST00000506106.1 ENST00000576263.5 downstream upstream none AATCTACAGACATTCAATGAGGGGAGGATTTCGTTCCATCAGATGGGCTTCCTGACATAATTGCAAAG|ATTCAGAGCCCAGTACCTTGGACTCCCAGTCTT...GTTCCTCTCCTCGGAGGAGCCAGGCCCCTCCACCGCCGCCCTGCCATCTCCCTCCTCCTCTTCCTGCGAGCCTCAGGCCTTTTCCCCAGGTCCGCCAGCGCTGCCTCCGCTGTTGCCTCCGCTCCCCGCAGCCTCGGCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17391 EXOC4::LMTK2 ENSG00000131558.15::ENSG00000164715.6 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133306061:+ chr7:132937829-133751342:+ chr7:132990815:+ LMTK2 ENSG00000164715.6 protein_coding + + chr7:98106862-98209638:+ chr7:98171541:+ chr7:97736174-97838950:+ chr7:97800853:+ chr7:133310142,chr7:133310139 chr7:98167006,chr7:98167001 NA NA chr7:132994896,chr7:132994893 chr7:97796318,chr7:97796313 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Sec8_exocyst_complex_component_specific_domain(100%)|Protein_kinase_domain(69%) Sec8_exocyst(100%)|PK_Tyr_Ser-Thr(50%),Pkinase(50%) 1 2 1 77 43 ENST00000253861.5 ENST00000297293.6 downstream upstream mismatches(1) CAAGCAAGTGCCTCAAAAGCTGGAACAGTGCATGGCCAGCAAcCACTATCTCAGTGCCACTGACATGTTG___GTGTCAGCAGTTGAGTCTTTGGAGGGCCCCCTGCTCCAGGTGGAAGGACTGAGTGACCTTCGACTAGAGCTTCACAGCAAGAAG...CGGCACCTGTACATCAAATCGACTAGCCGAGTTGTGCAGCGTAACAAGGAAAAAGGGAAAATCAG|GGTGACCTGAAGGCGTATCTGCGCAGCGAGCAGGAGCACATGCGGGGGGACTCACAGACCATGCTGCTGCAGAGGATGGCGTGCGAGGTCGCCGCGGGGCTGGCCGCCATGCACAAGCTGCACTTCCTGCACAG___AAATGAGGAAGGCTTCAAGGGAAAGGAACCAGTTTGACTGCAGCTACA...TTGACgtTGCaGCAttGCCGTtTTCAAACCTTaCCAcCTTAGATGTCCTCAACCAAGTCATTAtAGAGAGAGACACAAAACgCCCGAAGCCCCAGCTGGAG RHLYIKSTSRVVQRNKEKGKIr|vt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6133 chr7:133290881-133290988:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase LMTK2 TK Lmr Q8IWU2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17392 SOX5::CHD8 ENSG00000134532.20::ENSG00000100888.15 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23845983:- chr12:23682438-24715478:- chr12:23998917:- CHD8 ENSG00000100888.15 protein_coding - + chr14:21385194-21456126:- chr14:21391410:+ chr14:21853353-21924285:- chr14:21859569:+ chr12:23760896,chr12:23760875,chr12:23760848,chr12:23760844,chr12:23760831 chr14:21388399,chr14:21388399,chr14:21388399,chr14:21388399,chr14:21388399 NA NA chr12:23913830,chr12:23913809,chr12:23913782,chr12:23913778,chr12:23913765 chr14:21856558,chr14:21856558,chr14:21856558,chr14:21856558,chr14:21856558 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 2 0 39 4 ENST00000646273.1 unknown upstream upstream none AGACTTGTGGCCATAGGACTCCCACTTCTCAGCACAATACAATG___GAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCA...CGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAG|CTTAAATACCAAAGGAATGACTTTAAATCTTGCTGGATGGGACTGCCACTCACCGCTAGAAATCGGGGATCAACAGCAAACTCTGGATGcCCCTGgAACCcCATCTCCAGTTCAGCCCGGCGAGGGGCATCCTCACCCACCAGCAAAGTACCATCCACCTTATTGATGACAGGGATCC RKGSLADVVDTLKQRKMEELIKNEPE|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17409 ENSG00000269749::TOMM40 ENSG00000269749.1::ENSG00000130204.13 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000269749 ENSG00000269749.1 lncRNA - + chr19:40048757-40090925:- chr19:40056443:+ chr19:40554664-40596832:- chr19:40562350:+ TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44900730:+ chr19:45393826-45406946:+ chr19:45403987:+ chr19:40058761,chr19:40058759,chr19:40058762 chr19:44899745,chr19:44899745,chr19:44899743 NA NA chr19:40564668,chr19:40564666,chr19:40564669 chr19:45403002,chr19:45403002,chr19:45403000 NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' medium none |Eukaryotic_porin(51%) |Porin_3(21%) 2 7 5 23 6199 unknown ENST00000252487.9 downstream upstream mismatches(1),multimappers(1) CCTCAGAAGTCTTGGTCTATGGTCTGTTCAGGTTGATCCCAGCATACATTGGGGGCTCCTAAGGGACCCGAGCCTAATGGATTTGTGGGAGTTCCAGACCGTGGGGTGCAGAGGTTGCGGCCACGGGCGAGAATCCCCATCTGAGAGGAGCGTTGCTGTTTTCG|GAATCCTCGTAGCCCACTACCTCCAGAGCATCACGCCTTGCCTGGCCCTGGGTGGAGAGCTGGTCTACCACCGGCGGCCTGGAGAGGAGGGCACTGTCATGTCTCTAGCTGGGAAATACACAT___TGAACAACTGGTTGGCAACGGTAACGTTGGGCCAGGCGGGCATGCACGCAACATACTACCACAAAGCCAGTGACCAG___CTGCAGGTGGGTGTGGAGTTTGAGGCCAGCACAAGGATGCAGGACAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17436 ENSG00000285329::ADCY9 ENSG00000285329.1::ENSG00000162104.10 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285329 ENSG00000285329.1 protein_coding + + chr16:3365099-3479550:+ chr16:3430509:+ chr16:3415099-3529550:+ chr16:3480509:+ ADCY9 ENSG00000162104.10 protein_coding - + chr16:3953387-4116442:- chr16:4072050:+ chr16:4003388-4166443:- chr16:4122051:+ chr16:3431305,chr16:3431304 chr16:4059736,chr16:4059732 NA NA chr16:3481305,chr16:3481304 chr16:4109737,chr16:4109733 NA NA sense antisense unknown intron intron deletion/5'-5' medium none none KRAB(35%),Myb_DNA-bind_4(100%),SCAN(100%),zf-C2H2(77%),zf-C2H2_4(50%),zf-C2H2_6(50%),zf-C2HC_2(100%),zf-met(78%)| 3 0 2 4 4 ENST00000575785.2 unknown downstream upstream none CCATCATTGGGAGAAATCCCCACTCCTCCAAGAACCAACCCCCAAATTGGCTGGGACAG___...CAAATACTAAACCCTGCCATTCCCGGGATAAGAAGATTTAGGA...___TGTGTTAGCTGTGTTGACAGAGAACAAGTGTGATATGAAAGTCATCAGCGGGCTCTTTCAGGTAACCCAG|AACCAAAGCCACTGCATTCTGAAGACTGAAGACGA...GGAAGAAGAGGaCATGTGAGATTACAAGAGCTGGATTACAAGAGTGGACTGTGGAGGCTGAAGTAGCTCCATCGTGGATGCTACTCCGCCATGTGGCTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17450 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193059185:- chr1:192981380-193029210:- chr1:193028315:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192911481:- chr1:192136916-192926843:- chr1:192880611:- chr1:193057222 chr1:192917198 NA NA chr1:193026352 chr1:192886328 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Ubiquitin_carboxyl-terminal_hydrolase__family_1(9%)| Peptidase_C12(0%)| 1 3 0 225 7 ENST00000367455.8 ENST00000644436.1 upstream downstream none CCGGCGGCAGCTGGTGCGGGGGGCAGCTGAGAGCGAGAGGTGGATCGGGGCGGTGTGTGGCCAGGGCCATGACGGGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGGGTCTTCACCGAGCTCATTAAAGGATTCG|ACCTCCTGCTGGGACTCTACAGGAACTCAACTGCAGACTAGGAGGCAAAGGAGCCGACGGATGTATTCCACACTGAACAGCATCCTGGGATCCAGAGGGGTAAACAAGACGTCTGGTACCATCACTCCTGGCCCC MTGNAGEWCLMESDPGVFTELIKGF|dlllglyrnstad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17452 DNAJC9::P4HA1 ENSG00000213551.7::ENSG00000122884.13 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJC9 ENSG00000213551.7 protein_coding - - chr10:73183362-73247255:- chr10:73243843:- chr10:74943120-75007013:- chr10:75003601:- P4HA1 ENSG00000122884.13 protein_coding - - chr10:73007217-73096974:- chr10:73016899:- chr10:74766975-74856732:- chr10:74776657:- chr10:73215564,chr10:73215568 chr10:73030357,chr10:73030358 NA NA chr10:74975322,chr10:74975326 chr10:74790115,chr10:74790116 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none DnaJ_domain(100%)|2OG-Fe(II)_oxygenase_superfamily(96%) DnaJ(100%)|2OG-FeII_Oxy(39%),2OG-FeII_Oxy_3(39%) 1 3 0 467 101 ENST00000372950.6 ENST00000263556.3 upstream downstream duplicates(1) ATTCAGCAAGCTATTGACGCCGGAGAGGTCCCATCCTATAATGCCTTTGTCAAAGAATCGAAACAAAAGATGAATGCAAGGAAAAGGAGG___GCTCAGGAAGA...GCTTGATGAAGGCGTGGATAGCCTGAAGGCAGCCATTCAG|GTAGCAAATTATGGAGTTGGAGGACAGTATGAACCCCATTTTGACTTTGCACGG___AAAGATGAGCCAGATGCTTTCAAAGAGCTGGGGACAGG...GAGCTAGTGTTTGGCCCAAAAAA___GGAACTGCTGTTTTCTGGTATAATCTGTTTGCCAGTGGAGAAGGAGATTATAGTACACGGCATGCAGCCTGTCCAGTGCTAGTTGGCAACAAATGGG LDEGVDSLKAAIQ|VANYGVGGQYEPHFDFARKDEPDAFKELGT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17468 ENSG00000287594::LINC02538 ENSG00000287594.3::ENSG00000272549.1 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000287594 ENSG00000287594.3 lncRNA + + chr6:167678180-167680362:+ chr6:167678605:+ chr6:168078860-168081042:+ chr6:168079285:+ LINC02538 ENSG00000272549.1 lncRNA - - chr6:167666840-167679270:- chr6:167670909:- chr6:168067520-168079950:- chr6:168071589:- chr6:167678743,chr6:167679240,chr6:167678744 chr6:167677395,chr6:167677362,chr6:167677394 NA NA chr6:168079423,chr6:168079920,chr6:168079424 chr6:168078075,chr6:168078042,chr6:168078074 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 62 74 125 135 380 ENST00000662677.3 ENST00000609107.1 downstream downstream duplicates(16),low_entropy(2),mismatches(14) AAAAGCTGCGCATTTACCCGGCGCATTCTAACCGCCTTTGAGGTTCCCTCCGGCAGCCATGGGAGCCGTGGTGGGGCAAAGCCTGGGCTGGGAGACGCTGCAAGGCTCTGGGGAGCAGTGAGGCGCCGCGCCAGCTCCTCCGTTCCCGTCATAGCCTCACACGGGCTTCGCTGGACACGTCCAGGACGCAGCGCCGGTGGGCACCAGGCGTTGAGCGCCTGCCCCGCGTCTGTGCTAAGACCTCCCTTTGCATTATTGaATTTATTaCAACGATGGGGTGAG|TTCCTTCCAGGTCTCCGCGGAAAACTGAAGATTCCTGTGTGCTTTCAGAAAAGAGGTTCCAAGGAAAAGGGCAGCCATTTAGTTTTCACAAGTCTGGGCAGTGAGCGATTTGGAGCTTCCATCCTTGGCTGACATCATGAACACCAATGTTGCTGGCCTCGATCGCAAGAAGGGTGGGACTTCGTGCTTAGCCTTCCTGGGGAAGGGCCTGTCCCTGGGTCACGTCCCCAGTGACCACAGGAGGAAGAGAAGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17469 PHAF1::CBFB ENSG00000125149.12::ENSG00000067955.15 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1678 TRUE 3042 TRUE 1146 PHAF1 ENSG00000125149.12 protein_coding + + chr16:67109941-67148544:+ chr16:67144376:+ chr16:67143844-67182447:+ chr16:67178279:+ CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67098710:+ chr16:67062887-67134961:+ chr16:67132613:+ chr16:67144763,chr16:67144764 chr16:67095414,chr16:67095412 NA NA chr16:67178666,chr16:67178667 chr16:67129317,chr16:67129315 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Phagosome_assembly_factor_1(78%)|Core_binding_factor_beta_subunit(1%) UPF0183(92%)|CBF_beta(0%) 30 40 30 197 709 ENST00000219139.8 ENST00000290858.11 downstream upstream duplicates(5),low_entropy(2),mismatches(1) ATGAAAATTCATTCTCCTTCCCCTCATAAACAAGTTCCATCGAAGTGTAATGACTACTTTTTTAACTACTTCACTCTTGGAGTG___GACATCCTCTTTGATGCGAATACACACAAAGTGAAGAAGTTTGTTCTACACACCAATTACCCTGGGCATTATAATTTCAACAT|GCAAGAAGACAACAAGACCCTAGTCCTGGTTCCAATTTAGGTGGTGGTGATGACCTCAAACTTCGTTAATTAATAGCACAGCAGATGTGTGCTGCCCATCTTTACATACACATTGCTTCTAGTTGGCAGAAATAATTGATTAAAAGACCAGAAACTGTGATAACTGGAGGTACTACGGTCT MKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNm|qednktlvlvpi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 17470 PHAF1::CBFB ENSG00000125149.12::ENSG00000067955.15 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3042 TRUE 1146 PHAF1 ENSG00000125149.12 protein_coding + + chr16:67109941-67148544:+ chr16:67140594:+ chr16:67143844-67182447:+ chr16:67174497:+ CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67098710:+ chr16:67062887-67134961:+ chr16:67132613:+ chr16:67144763,chr16:67144764 chr16:67095414,chr16:67095412 NA NA chr16:67178666,chr16:67178667 chr16:67129317,chr16:67129315 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Phagosome_assembly_factor_1(70%)|Core_binding_factor_beta_subunit(1%) UPF0183(82%)|CBF_beta(0%) 0 1 17 179 709 ENST00000219139.8 ENST00000412916.7 downstream upstream mismatches(1) GTTCAGTGTATTTTGGTGATTCCTGCCAAGATGTTCTTAGCATGCTTGGCTCTCCACACAAAGTCTTCTATAAATCAGAAGACAAG___ATGAAAATTCATTCTCCTTCCCCTCATAAACAAGTTCCATCGAAGTGTAATGACTACTTTTTTAACTACTTCACTCTTGGAGTG|GCAAGAAGACAACAAGACCCTAGTCCTGGTTCCAATTTAGGTGGTGGTGATGACCTCAAACTTCGTTAATTAATAGCACAGCAGATGTGTGCTGCCCATCTTTACATACACATTGCTTCTAGTTGGCAGAAATAATTGATTAAAAGACCAGAAACTGTGATAACTGGAGGTACTACGG SVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGV|ARRQQDPSPGSNLGGGDDLKLR* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 17471 SENP6::MYO6 ENSG00000112701.18::ENSG00000196586.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3043 TRUE 1147 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75670720:+ chr6:76311225-76427997:+ chr6:76380436:+ MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75817501:+ chr6:76458918-76629254:+ chr6:76527218:+ chr6:75672653,chr6:75672654 chr6:75775484,chr6:75775482 NA NA chr6:76382369,chr6:76382370 chr6:76485201,chr6:76485199 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Myosin_VI_cargo_binding_domain(100%),Myosin_head_(motor_domain)(100%) |IQ(100%),Myosin-VI_CBD(100%),Myosin_head(100%) 26 17 23 142 133 ENST00000447266.7 ENST00000369985.9 downstream upstream duplicates(8),low_entropy(2) GAAGCAGCGCTAAATGAAAATACTTGCAGAGCAGAGCGTGAACTACGAAGCATTCCAGAAGACTCAGAGTTAAATACAGTTACATTGCCAAGAAAAGCAAGAATGAAAGACCAG___TTTGGCAATTCTATTATCAACACACCTCTGAAACGTCGTAAAGTGTTTTCTCAAGAACCTCCAGATGCTTTAGCTTTAAGCTGCCAAAGTTCCTTTGACAGTGTCATTTTAAACTGTCGAAGTATACGAGTAGGAACACTCTTCCGGCTGTTAATAGAGCCTGTAATT|GTGACAGTGGATAGTGGAAACAGGAGATCGTGGATCCTCCTTCAAAAATGGAGGATGGAAAGCCCGTTTGGGCGCCACACCCTACAGATGGATTTCAGATGGGCAATATTGTGGATATTGGCCCCGACAGCTTAACAATTGAACCCTTGAATCAGAAAGGCAAG___ACATTTTTGGCTCTCATAAACCAAGTGTTTCCTGCAGAAGAGGACAGTAAAAAAGATGTGGAAG EAALNENTCRAERELRSIPEDSELNTVTLPRKARMKDQFGNSIINTPLKRRKVFSQEPPDALALSCQSSFDSVILNCRSIRVGTLFRLLIEPVI|vtvdsgnrrswillqkwrmespfgrhtlqmdfrwailwilapta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17472 SENP6::MYO6 ENSG00000112701.18::ENSG00000196586.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3043 TRUE 1147 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75670720:+ chr6:76311225-76427997:+ chr6:76380436:+ MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75777453:+ chr6:76458918-76629254:+ chr6:76487170:+ chr6:75672653,chr6:75672654 chr6:75775484,chr6:75775482 NA NA chr6:76382369,chr6:76382370 chr6:76485201,chr6:76485199 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Myosin_VI_cargo_binding_domain(100%),Myosin_head_(motor_domain)(100%) |IQ(100%),Myosin-VI_CBD(100%),Myosin_head(100%) 1 0 24 142 6 ENST00000447266.7 ENST00000662603.1 downstream upstream duplicates(3),mismatches(1) AGTTAAATACAGTTACATTGCCAAGAAAAGCAAGAATGAAAGACCAG___TTTGGCAATTCTATTATCAACACACCTCTGAAACGTCGTAAAGTGTTTTCTCAAGAACCTCCAGATGCTTTAGCTTTAAGCTGCCAAAGTTCCTTTGACAGTGTCATTTTAAACTGTCGAAGTATACGAGTAGGAACACTCTTCCGGCTGTTAATAGAGCCTGTAATT|GGTCTCACTGTGTCACCTGGGCTACAGTGCAGTGGCGCAATTTCAGTTCACTGCAACTTTGACTTCCTGGGCTCAGATGATCCTGGC LNTVTLPRKARMKDQFGNSIINTPLKRRKVFSQEPPDALALSCQSSFDSVILNCRSIRVGTLFRLLIEPVI|gltvspglqcsgaisvhcnfdflgsddp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17473 SENP6::MYO6 ENSG00000112701.18::ENSG00000196586.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3043 TRUE 1147 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75634811:+ chr6:76311225-76427997:+ chr6:76344527:+ MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75835901:+ chr6:76458918-76629254:+ chr6:76545618:+ chr6:75672653,chr6:75672654 chr6:75775484,chr6:75775482 NA NA chr6:76382369,chr6:76382370 chr6:76485201,chr6:76485199 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Myosin_VI_cargo_binding_domain(100%),Myosin_head_(motor_domain)(84%) |IQ(100%),Myosin-VI_CBD(100%),Myosin_head(77%) 1 0 1 166 111 ENST00000447266.7 ENST00000369985.9 downstream upstream none GGCAACCCAATTGGACTTAACATGTTGAGCAACAATAAGAAATTGAG___TGAAAATACGCAAAATACGTCATTATGTTCTGGAACTGTAGTTCATGGTAGACGTTTTCATCATGCTCATGCACAGATACCAGTAGTAAAAACAGCAGCCCAAAG|ATACCTGACTGAATCCTATGGAACAGGTCAAGATATTGATGACAGAATTGTTG GNPIGLNMLSNNKKLSENTQNTSLCSGTVVHGRRFHHAHAQIPVVKTAAQr|YLTESYGTGQDIDDRIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17474 RAPGEF1::LINC01508 ENSG00000107263.19::ENSG00000231107.2 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAPGEF1 ENSG00000107263.19 protein_coding - - chr9:131576770-131740076:- chr9:131621796:- chr9:134452157-134615463:- chr9:134497183:- LINC01508 ENSG00000231107.2 lncRNA - + chr9:90300885-90433566:- chr9:90368813:+ chr9:93063167-93195848:- chr9:93131095:+ chr9:131619573,chr9:131619577 chr9:90362929,chr9:90362924 NA NA chr9:134494960,chr9:134494964 chr9:93125211,chr9:93125206 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 24 20 20 284 48 ENST00000372195.5 unknown upstream upstream duplicates(2),low_entropy(2),mismatches(1) AGGTTCCTCAGCCCCTGTCGAATTTGTGGGTGATTTTACTGCTCCTGAGTCAACCGGTGACCCAGAAAAACCACCTCCTCTACCAGAGAAGAAAAACAAACACA___TGCTGGCCTACATGCAGTTGCTGGAGGACTACTCGGAGCCGCAGCCCTCTATGTTCTACCAGACGCCACAGAACGAGCACATCTACCAGCAGAAGAACAAGCTCCTCATGGAGGTATACGGCTTCAGCGACTCCTTCAGTGGGGTGGACTCCGTGCAGGAGCTGGCCCCGCCGCCCGCCCTACCCCCCAAGCAGCGGCAGCTG|TTTTAAAATGCTTATTTACAGAACAAGACTTAGAATGACAGCATGAGGAACTGCATGAACGCTCTTCCAATCAAATCAACTATCACCAATGAAAACATGTTTTTTAACTATTTCGAATCTCTGGAAATTGTTCTCAGATCAACACCAAGTGAAAAT GSSAPVEFVGDFTAPESTGDPEKPPPLPEKKNKHMLAYMQLLEDYSEPQPSMFYQTPQNEHIYQQKNKLLMEVYGFSDSFSGVDSVQELAPPPALPPKQRQL|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17475 PDE3A::SLCO1C1 ENSG00000172572.7::ENSG00000139155.9 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1679 FALSE NA FALSE NA PDE3A ENSG00000172572.7 protein_coding + + chr12:20368537-20688583:+ chr12:20370244:+ chr12:20521471-20841517:+ chr12:20523178:+ SLCO1C1 ENSG00000139155.9 protein_coding + + chr12:20695332-20753386:+ chr12:20740184:+ chr12:20848266-20906320:+ chr12:20893118:+ chr12:20419203,chr12:20419204 chr12:20737921,chr12:20737919 NA NA chr12:20572137,chr12:20572138 chr12:20890855,chr12:20890853 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Kazal-type_serine_protease_inhibitor_domain(14%),Organic_Anion_Transporter_Polypeptide_(OATP)_family(25%) |Kazal_2(0%),OATP(21%) 16 12 4 51 43 ENST00000359062.4 ENST00000266509.7 downstream upstream duplicates(3) GCTGGGCGTCCTCATGATCGCCTTGACTAGCGCGGTCAGGACCGTGTCCCTCATTTCCTTAGAGAGGTTCAAGGTCGCCTGGAGACCTTACCTGGCGTACCTGGCCGGCGTGCTGGGGATCCTCTTGGCCAGGTACGTGGAACAAATCTTGCCGCAGTCCGCGGAGGCGGCTCCAAGGGAGCATTTGGGGTCCCAGCTGATTGCTGGGACCAAGGAAGATATCCCGGTGTTTAAGAGGAGGAGGCGGTCCAGCTCCGTCGTGTCCGCCGAGATGTCCGGCTGCAGCAGCAAGTCCCATCGGAGGACCTCCCTGCCCTGTATACCGAGGGAACAG|ATATTTTACAACTGCACTTGTGTGGGAATTGCAGCTTCTAAATCCGGAAATTCCTCAGGCATAGTGGGAAGATGTCAGAAAGACAATGGATGTCCCCAAATGTTTCTGTATTTCCTTGTAATTTCAGTCATCACATCCTATACTTTATCCCTAGGTGGCATACCTGGATACATATTACTTCTGAG___GTGCATTAAGCCACAGCTTAAGTCTTTTGCCTTGGGTATCTACACATTAGCAATAAGAGTTCTTG___CAGGAATCCCA LGVLMIALTSAVRTVSLISLERFKVAWRPYLAYLAGVLGILLARYVEQILPQSAEAAPREHLGSQLIAGTKEDIPVFKRRRRSSSVVSAEMSGCSSKSHRRTSLPCIPREQ|IFYNCTCVGIAASKSGNSSGIVGRCQKDNGCPQMFLYFLVISVITSYTLSLGGIPGYILLLRCIKPQLKSFALGIYTLAIRVLAGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17477 ZNF367::ENSG00000285269 ENSG00000165244.7::ENSG00000285269.2 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3044 TRUE 1148 ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96417613:- chr9:99148223-99180652:- chr9:99179895:- ENSG00000285269 ENSG00000285269.2 protein_coding - - chr9:96235331-96352058:- chr9:96324169:- chr9:98997613-99114340:- chr9:99086451:- chr9:96407928,chr9:96407932 chr9:96331596,chr9:96331597 NA NA chr9:99170210,chr9:99170214 chr9:99093878,chr9:99093879 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none none |KR(100%),adh_short(100%),adh_short_C2(100%) 1 16 2 37 292 ENST00000375256.5 ENST00000643789.1 upstream downstream mismappers(2),mismatches(1) CGCGCCCCCGCCCGCCGCCTCGGCCTCCGCCGCCGCCTCGGGAGGTGAGGACGAGGAGGAAGCGAGCAGCCCAGACAGCGGCCACCTCAAG|GTTTCTGCTGATGTACTCCACGGTTCTGTGCAGCTATTACAATTCAGCCCTGACGACAGCAGTGGTTGGAGCCATCAAG___AATGTATCCGTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATATTTG___CATGGCAGGGGGCTTGAGATATTCCTTTTTAACACTGAGCAGCCAGTTAAAACCTAAACCTGTGGGTGAAGAAAACATCTGTTTGGATTTGAAGAGCTAAAGAGTCTGCAGCAGGATTGGAGACTGACTTGTGACTGCGGG APPPAASASAAASGGEDEEEASSPDSGHLK|vsadvlhgsvqllqfspddssgwshqecirclhwdinrwrlhflfvklcrvkylhgrgleiflfnteqpvkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17478 ZNF367::ENSG00000285269 ENSG00000165244.7::ENSG00000285269.2 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3044 TRUE 1148 ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96417613:- chr9:99148223-99180652:- chr9:99179895:- ENSG00000285269 ENSG00000285269.2 protein_coding - - chr9:96235331-96352058:- chr9:96322080:- chr9:98997613-99114340:- chr9:99084362:- chr9:96407928,chr9:96407932 chr9:96331596,chr9:96331597 NA NA chr9:99170210,chr9:99170214 chr9:99093878,chr9:99093879 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none none |KR(100%),adh_short(100%),adh_short_C2(100%) 1 0 1 37 303 ENST00000375256.5 ENST00000643789.1 upstream downstream mismatches(1) GGGGCTTCGTGGCCGGGGCGCGCCCCCGCCCGCCGCCTCGGCCTCCGCCGCCGCCTCGGGAGGTGAGGACGAGGAGGAAGCGAGCAGCCCAGACAGCGGCCACCTCAAG|AATGTATCCGTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATATTTG___CATGGCAGGGGGCTTGAGATATTCCTTTTTAACACTGAG GLRGRGAPPPAASASAAASGGEDEEEASSPDSGHLK|nvsvayigiliggdyifsllnfvglnicmagglrysfltl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17479 ZNF367::ENSG00000285269 ENSG00000165244.7::ENSG00000285269.2 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3044 TRUE 1148 ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96417613:- chr9:99148223-99180652:- chr9:99179895:- ENSG00000285269 ENSG00000285269.2 protein_coding - - chr9:96235331-96352058:- chr9:96298462:- chr9:98997613-99114340:- chr9:99060744:- chr9:96407928,chr9:96407932 chr9:96331596,chr9:96331597 NA NA chr9:99170210,chr9:99170214 chr9:99093878,chr9:99093879 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through low none none |KR(93%),adh_short(94%),adh_short_C2(100%) 0 1 0 37 56 ENST00000375256.5 ENST00000643789.1 upstream downstream none CAGACAGCGGCCACCTCAAG|TGATCACTGGAGCAGGCGATGGAATTGGGAAAGCGTACTCGTTCGAG___CTAGCAAAACGTGGACTCAATGTTGTCCTTATTA...TGCTTCCAAACCTTCTCCCAAGCCATTTCCTGAACGCACCGGATGAAATCCAG___AGCCTCATCCATTGTAACATCACCTCCGTAGTCAAG___ATGACACAGCTA DSGHLK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17480 ZNF367::SLC35D2 ENSG00000165244.7::ENSG00000130958.13 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3045 TRUE 1149 ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96417613:- chr9:99148223-99180652:- chr9:99179895:- SLC35D2 ENSG00000130958.13 protein_coding - - chr9:96313444-96383711:- chr9:96324169:- chr9:99075726-99145993:- chr9:99086451:- chr9:96407928,chr9:96407932 chr9:96331596,chr9:96331597 NA NA chr9:99170210,chr9:99170214 chr9:99093878,chr9:99093879 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Triose-phosphate_Transporter_family(21%) |TPT(4%) 1 16 2 37 292 ENST00000375256.5 ENST00000253270.13 upstream downstream mismappers(2),mismatches(1) CGCGCCCCCGCCCGCCGCCTCGGCCTCCGCCGCCGCCTCGGGAGGTGAGGACGAGGAGGAAGCGAGCAGCCCAGACAGCGGCCACCTCAAG|GTTTCTGCTGATGTACTCCACGGTTCTGTGCAGCTATTACAATTCAGCCCTGACGACAGCAGTGGTTGGAGCCATCAAG___AATGTATCCGTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATATTTG___CATGGCAGGGGGCTTGAGATATTCCTTTTTAACACTGAGCAGCCAGTTAAAACCTAAACCTGTGGGTGAAGAAAACATCTGTTTGGATTTGAAGAGCTAAAGAGTCTGCAGCAGGATTGGAGACTGACTTGTGACTGCGGG APPPAASASAAASGGEDEEEASSPDSGHLK|vsadvlhgsvqllqfspddssgwshqecirclhwdinrwrlhflfvklcrvkylhgrgleiflfnteqpvkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17481 ZNF367::SLC35D2 ENSG00000165244.7::ENSG00000130958.13 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3045 TRUE 1149 ZNF367 ENSG00000165244.7 protein_coding - - chr9:96385941-96418370:- chr9:96417613:- chr9:99148223-99180652:- chr9:99179895:- SLC35D2 ENSG00000130958.13 protein_coding - - chr9:96313444-96383711:- chr9:96322080:- chr9:99075726-99145993:- chr9:99084362:- chr9:96407928,chr9:96407932 chr9:96331596,chr9:96331597 NA NA chr9:99170210,chr9:99170214 chr9:99093878,chr9:99093879 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Triose-phosphate_Transporter_family(12%) |TPT(1%) 1 0 1 37 303 ENST00000375256.5 ENST00000253270.13 upstream downstream mismatches(1) GGGGCTTCGTGGCCGGGGCGCGCCCCCGCCCGCCGCCTCGGCCTCCGCCGCCGCCTCGGGAGGTGAGGACGAGGAGGAAGCGAGCAGCCCAGACAGCGGCCACCTCAAG|AATGTATCCGTTGCCTACATTGGGATATTAATCGGTGGAGACTACATTTTCTCTTTGTTAAACTTTGTAGGGTTAAATATTTG___CATGGCAGGGGGCTTGAGATATTCCTTTTTAACACTGAG GLRGRGAPPPAASASAAASGGEDEEEASSPDSGHLK|NVSVAYIGILIGGDYIFSLLNFVGLNICMAGGLRYSFLTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17482 ITPR1::ENSG00000235978 ENSG00000150995.21::ENSG00000235978.8 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR1 ENSG00000150995.21 protein_coding + + chr3:4493345-4847506:+ chr3:4521094:+ chr3:4535029-4889190:+ chr3:4562778:+ ENSG00000235978 ENSG00000235978.8 lncRNA - + chr3:4793222-4887293:- chr3:4878351:+ chr3:4834906-4928977:- chr3:4920035:+ chr3:4610566,chr3:4610561 chr3:4875054,chr3:4875046 NA NA chr3:4652250,chr3:4652245 chr3:4916738,chr3:4916730 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(22%)| Ins145_P3_rec(3%)| 5 5 4 36 28 ENST00000357086.10 unknown downstream upstream duplicates(11),mismatches(1) TCGACAAATGGATTTATTAGCACCTTGGG___CCTGGTTGATGATCGTTGTGTTGTACAGCCAGAAACCGGGGACCTTAACAATCCACCTAAGAAATTCAGAG|TAATTGTTGGAAAGAAGAAATCTAAGACGTAAGCCATGAGATTCCAAAGAGCAGAAAAAGAATCCAGGGAGCCCATTAG___GTTAGATGGATAATGTGCCGATGTGGGAACAAGGTTCAGAGGGTGGCACATCTCACACATGTCATGAAC?CCCAATCA STNGFISTLGLVDDRCVVQPETGDLNNPPKKFR|vivgkkkskt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17483 SASH1::TRDN ENSG00000111961.19::ENSG00000186439.15 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1680 FALSE NA FALSE NA SASH1 ENSG00000111961.19 protein_coding + + chr6:148272304-148552044:+ chr6:148343223:+ chr6:148593440-148873180:+ chr6:148664359:+ TRDN ENSG00000186439.15 protein_coding - - chr6:123216339-123637189:- chr6:123516206:- chr6:123537484-123958334:- chr6:123837351:- chr6:148368796,chr6:148368797 chr6:123524133,chr6:123524135 NA NA chr6:148689932,chr6:148689933 chr6:123845278,chr6:123845280 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Aspartyl_beta-hydroxylase_N-terminal_region(47%) none 2 6 4 51 33 ENST00000367467.8 ENST00000334268.9 downstream downstream none GGGAGCAGCTGGCCCGGGGCCGGAGCCTGAGCCCGAGCCCGAGCCGGAGCCCGAGCCCGCGCCGGAGCCGGAACCGGAGCCCAAGCCGGGTGCTGGCACATCCGAGGCGTTCTCCCGACTCTGGACCGACGTGATGGGTATCCTG|TTACACACAAAGAAAAAGAAAAAGGAAAAGAAAAAGTAAGAGAAAAAGAAAAACCTGAAAAGAAAG___CAACTCACAAGGAAAAAATTGAGAAAAAAGAAAAACCAGAAACAAAGACAgTGGCGA GAAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAFSRLWTDVMGIL|lhtkkkkkekkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17485 DEPDC1B::PDE4D ENSG00000035499.13::ENSG00000113448.21 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1681 TRUE 3046 TRUE 1150 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60638750:- chr5:59892739-59996017:- chr5:59934577:- PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59988717:- chr5:58264865-59817947:- chr5:59284544:- chr5:60618983,chr5:60618985 chr5:60044260,chr5:60044260 NA NA chr5:59914810,chr5:59914812 chr5:59340087,chr5:59340087 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%),RhoGAP_domain(40%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) DEP(100%),RhoGAP(0%)|PDE4_UCR(100%),PDEase_I(100%) 2 2 6 126 23 ENST00000265036.10 ENST00000509355.5 upstream downstream none GTCAAACTTGTCAATTCGAAGTTCATCATCCATAATGTATATAGTGTTAGCAAGCAGGGAGTTGTTATTCTTGATGACAAGTCAA___AAGAACTTCCTCATTG...GTCAGCTATGAAGTGTTTGGCAAATT___GGCCCAACTGTTCTGATTTGAAGCAGCCTATGTACTTGGGATTTGAAAAAGATGTCTTTAAAACCATAGCTGATTACTATGGTCACTTGAAAGAGCCTCTACTTACATTTCATCTTTTTGATGCTTTTGTCAGTGTACTGG|GCCTCTGAGGAAACACTACATTCCAGTAATGAAGAGGAAGACCCTTTCCGCGGAATGGAACCCTATCTTGTCCGGAGACTTTCATGTCGCAATATTCAGCTTCCCCCTCTCGCCTTCAGACAGTTGGAACAAGCTGACTTGAAAAGTGAATCAGAGAACATTCAACGACCAACCAGCCTCCCCCTGAAGATTCTGCCGCTGATTGCTATCACTTCTGCAGAATCCAGTGGGTGAGTGCCCTCAGATGTCATTTCCCC...ACATTGTGGGTTTGCGTTATTTGATTCAGAAATTTTACATATGTGATTCCATATGGTAAATCTATGCAGTGTTTGTATTTGGGTTTGTGTTTAAATTATTT SAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVL|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17486 DEPDC1B::PDE4D ENSG00000035499.13::ENSG00000113448.21 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3046 TRUE 1150 DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59988717:- chr5:58264865-59817947:- chr5:59284544:- chr5:60618983,chr5:60618985 chr5:60044260,chr5:60044260 NA NA chr5:59914810,chr5:59914812 chr5:59340087,chr5:59340087 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(98%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%),Phosphodiesterase_4_upstream_conserved_regions_(UCR)(100%) DEP(0%)|PDE4_UCR(100%),PDEase_I(100%) 0 0 1 201 23 ENST00000265036.10 ENST00000502484.6 upstream downstream mismappers(1) AAGATTTTGAAGACAATCGTCACTTATACAG|GCCTCTGAGGAAACACTACATTCCAGTAATGAAGAGGAAGACCCTTTCCGCGGAATGGAACCCTATCTTGTCCGGAGACTTTCATGTCGCAATATTCAGCTTCCCCCTCTCGCCTTCAGACAGTTGGAACAAGCTGACTTGAAAAGTGAATCAGAGAACATTCAACGACCAACCAGCCTCCCCCTGAAGATTCTGCCGCTGATTGCTA DFEDNRHLYr|plrkhyipvmkrktlsaewnpilsgdfhvaifsfplspsdswnklt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17490 PLCB1::ENSG00000283072 ENSG00000182621.19::ENSG00000283072.3 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3048 TRUE 1151 PLCB1 ENSG00000182621.19 protein_coding + + chr20:8077251-8968360:+ chr20:8790261:+ chr20:8057898-8949007:+ chr20:8770908:+ ENSG00000283072 ENSG00000283072.3 lncRNA + + chr20:22684958-22746991:+ chr20:22744691:+ chr20:22665596-22727629:+ chr20:22725329:+ chr20:8835144,chr20:8835142 chr20:22698830,chr20:22698825 NA NA chr20:8815791,chr20:8815789 chr20:22679468,chr20:22679463 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none C2_domain(100%),PH_domain(100%),PLC-beta_C_terminal(80%),Phosphatidylinositol-specific_phospholipase_C__X_domain(100%),Phosphatidylinositol-specific_phospholipase_C__Y_domain(100%),Phosphoinositide-specific_phospholipase_C__efhand-like(100%),Protein_of_unknown_function_(DUF1154)(100%)| C2(100%),DUF1154(100%),EF-hand_like(100%),PH_14(100%),PI-PLC-X(100%),PI-PLC-Y(100%),PLC-beta_C(14%)| 1 4 2 200 20 ENST00000637919.1 ENST00000652062.1 downstream upstream none CTTATTCAGAGTGTCTTAACAG___AAGTGGAAGCACAGACCATCGAAGAACTAAAGCAACAGAAATCGTTTGTGAAACTTCAAAAGAAACACTACAAAGAAAT...GAAGAAGCGCAAAGTAAACGGCAAGAAAAACTCGTAGAGAAACACAAGGAAATACGTCAGCAGATCCTGGATGAAAAGCCCAAG|AAACTGATTTTGCAACATTGCTAAACTAGCAGACTGGAGAGATGCTCACAATTCTCAGATGATATGAGTGTTTCTCTGCATGGGCATCAGAGCTGCCACTGCTTGACATTCCAAGAACTTCCCAGCTACAGGTTCATCACCTTCTCCTCCCAGGAAAGACATGTGAGATTCTGCACAGAGACAGGAATGTC___AAGCAAGAACTGAC EEAQSKRQEKLVEKHKEIRQQILDEKPK|klilqhc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17491 PLCB1::ENSG00000283072 ENSG00000182621.19::ENSG00000283072.3 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3048 TRUE 1151 PLCB1 ENSG00000182621.19 protein_coding + + chr20:8077251-8968360:+ chr20:8802173:+ chr20:8057898-8949007:+ chr20:8782820:+ ENSG00000283072 ENSG00000283072.3 lncRNA + + chr20:22684958-22746991:+ chr20:22744691:+ chr20:22665596-22727629:+ chr20:22725329:+ chr20:8835144,chr20:8835142 chr20:22698830,chr20:22698825 NA NA chr20:8815791,chr20:8815789 chr20:22679468,chr20:22679463 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site deletion high none C2_domain(100%),PH_domain(100%),PLC-beta_C_terminal(81%),Phosphatidylinositol-specific_phospholipase_C__X_domain(100%),Phosphatidylinositol-specific_phospholipase_C__Y_domain(100%),Phosphoinositide-specific_phospholipase_C__efhand-like(100%),Protein_of_unknown_function_(DUF1154)(100%)| C2(100%),DUF1154(100%),EF-hand_like(100%),PH_14(100%),PI-PLC-X(100%),PI-PLC-Y(100%),PLC-beta_C(25%)| 0 3 3 55 20 ENST00000637919.1 ENST00000652062.1 downstream upstream none AAAAACTCGTAGAGAAACACAAGGAAATACGTCAGCAGATCCTGGATGAAAAGCCCAAG___GGGGAAGGTTCCTCCTCATTCTTGTCGGAAACTTGCCATGAGGATCCCTCTGTTTCCCCCAACTTTACTCCCCCCAACCCTCAAGCTCTCAAGTGGTGACCACCGTCCTTCCGGCCAG|AAACTGATTTTGCAACATTGCTAAACTAGCAGACTGGAGAGATGCTCACAATTCTCAGATGATATGAGTGTTTCTCTGCATGGGCATCAGAGCTGCCACTGCTTGACATTCCAAGAACTTCCCAGCTACAGGTTCATCACCTTCTCCTCCCAGGAAAGACATGTGAGATTCTGCACAGAGACAGGAATGTC___...TCCCTGGCTGAATGCCATGGGTTAC...___AAGCAAGAACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17492 PLCB1::ENSG00000283072 ENSG00000182621.19::ENSG00000283072.3 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3048 TRUE 1151 PLCB1 ENSG00000182621.19 protein_coding + + chr20:8077251-8968360:+ chr20:8790261:+ chr20:8057898-8949007:+ chr20:8770908:+ ENSG00000283072 ENSG00000283072.3 lncRNA + + chr20:22684958-22746991:+ chr20:22746432:+ chr20:22665596-22727629:+ chr20:22727070:+ chr20:8835144,chr20:8835142 chr20:22698830,chr20:22698825 NA NA chr20:8815791,chr20:8815789 chr20:22679468,chr20:22679463 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none C2_domain(100%),PH_domain(100%),PLC-beta_C_terminal(80%),Phosphatidylinositol-specific_phospholipase_C__X_domain(100%),Phosphatidylinositol-specific_phospholipase_C__Y_domain(100%),Phosphoinositide-specific_phospholipase_C__efhand-like(100%),Protein_of_unknown_function_(DUF1154)(100%)| C2(100%),DUF1154(100%),EF-hand_like(100%),PH_14(100%),PI-PLC-X(100%),PI-PLC-Y(100%),PLC-beta_C(14%)| 0 1 0 200 30 ENST00000637919.1 ENST00000652062.1 downstream upstream none CGGCAAGAAAAACTCGTAGAGAAACACAAGGAAATACGTCAGCAGATCCTGGATGAAAAGCCCAAG|GCTGGGGGATGCCAGCTGCCATATTGTGAAGACCC...CAGCATGACCCTACTAAACAACTCTCAAATTTCTGACCCTCAGAAATTGTGTGAGATAATAATTGTTTTTTGTTTTAATATGCTAAGCTTTAGGTTTGTTT RQEKLVEKHKEIRQQILDEKPK|aggcqlpyced NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17504 SLC25A21::TTC6 ENSG00000183032.12::ENSG00000139865.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A21 ENSG00000183032.12 protein_coding - - chr14:36677921-37172606:- chr14:37172281:- chr14:37147126-37641811:- chr14:37641486:- TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37669958:+ chr14:38064834-38510647:+ chr14:38139163:+ chr14:37169803,chr14:37169805 chr14:37662691,chr14:37662689 NA NA chr14:37639008,chr14:37639010 chr14:38131896,chr14:38131894 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Mitochondrial_carrier_protein(3%)|Tetratricopeptide_repeat(100%) Mito_carr(0%)|ANAPC5(100%),TPR_1(100%),TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_8(100%) 0 2 1 40 5 ENST00000331299.6 ENST00000533625.5 upstream upstream none CCTTGTCCTCCCGCCTGGCGAAGATGTCCGCCAAGCCTGAAGTCAGCTTAGTGCGCGAGGCTTCTCGGCAGATCGTGGCCGGTGGTTCTGCAG|ATCCATACGAGAAAAATTTGGAGGAGATGGAATTTAGTATGGAGAAGAGATGACTGATGGCTGATTATTAATGCTCTTTCA...CATGATCTGTGCACCACCATCCCAGCCCAGGAGCTGCCTGTTGACTTGCGCCTGGCTTCTCGAGTGTATCACACTGCTAACAGGAAAGGCCACGATACCC MSAKPEVSLVREASRQIVAGGSA|dpyeknleemefsmekr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17513 AUH::WNK2 ENSG00000148090.12::ENSG00000165238.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AUH ENSG00000148090.12 protein_coding - - chr9:91213815-91361918:- chr9:91306329:- chr9:93976097-94124200:- chr9:94068611:- WNK2 ENSG00000165238.17 protein_coding + - chr9:93184122-93320572:+ chr9:93320024:- chr9:95946404-96082854:+ chr9:96082306:- NA NA NA NA NA NA NA NA sense antisense out-of-frame intron intron duplication/5'-5' medium none Enoyl-CoA_hydratase/isomerase(33%)| ECH_1(38%),ECH_2(36%)| 4 0 4 8 13 ENST00000375731.9 unknown upstream downstream duplicates(1) TAATAATCAGGAGTGAAGTCCCAGGGATATTCTGTGCTG___GTGCTGACCTTAAGGAAAGAGCCAAAATGAGTTCCAGTGAAGTTGGTCCTTTTGTCTCCAAAATAAGAGCAGTGATTAACGATATTG___AAATAGAAGTGACTGCATTTACCATGTTAAGCAGCATTTTAAATGCCAAGAGTTTTGTTAAATGTGGAACAGCAATCAACAGAAGTCATCACTCAGTTCTACTA|AAGCTCGAAGGCTGGCACTGCAGCTCTCTGAGGAGGTGGCCCCACAGCCAAG IIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIeievtaftmlssilnaksfvkcgtainrshhsvll|klegwhcsslrrwphsq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17514 AUH::ENSG00000290685 ENSG00000148090.12::ENSG00000290685.1 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AUH ENSG00000148090.12 protein_coding - - chr9:91213815-91361918:- chr9:91306329:- chr9:93976097-94124200:- chr9:94068611:- ENSG00000290685 ENSG00000290685.1 lncRNA - - chr9:93318199-93346414:- chr9:93320024:- chr9:96080481-96108696:- chr9:96082306:- NA NA NA NA NA NA NA NA sense sense unknown intron intron duplication medium none Enoyl-CoA_hydratase/isomerase(33%)| ECH_1(38%),ECH_2(36%)| 4 1 2 8 13 ENST00000375731.9 ENST00000648864.1 upstream downstream none TAATAATCAGGAGTGAAGTCCCAGGGATATTCTGTGCTG___GTGCTGACCTTAAGGAAAGAGCCAAAATGAGTTCCAGTGAAGTTGGTCCTTTTGTCTCCAAAATAAGAGCAGTGATTAACGATATTG___...GAAATAGAAGTGACTGCATTTACCATGTTAAGCAGCATTTTAAATGCCAAGAGTTTTGTTAAATGTGGAACAGCAATCAACAGAAGTCATCACTCAGTTCTACTA|AAGCTCGAAGGCTGGCACTGCAGCTCTCTGAGGAGGTGGCCCCACAGCCAAGGCAGCCCCCACAGTGGACCGGGCAGGAGACACTGGGACCCTCAGCTTGCTCACA___ATATACAATCTATTGGGGATTCCGTGCCACTGACCACCATGTACAAGGAAGGGATTCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17515 SRBD1::CLIP4 ENSG00000068784.13::ENSG00000115295.21 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRBD1 ENSG00000068784.13 protein_coding - - chr2:45388680-45612165:- chr2:45546317:- chr2:45615819-45839304:- chr2:45773456:- CLIP4 ENSG00000115295.21 protein_coding + - chr2:29097705-29199777:+ chr2:29157264:- chr2:29320571-29422643:+ chr2:29380130:- chr2:45517403 chr2:29165136 NA NA chr2:45744542 chr2:29388002 NA NA sense antisense out-of-frame intron CDS deletion/5'-5' medium none Tex-like_protein_N-terminal_domain(100%),Tex_protein_YqgF-like_domain(69%)| Tex_N(100%),Tex_YqgF(6%)| 1 3 2 24 53 ENST00000263736.5 unknown upstream downstream duplicates(1) CTTTTGCTGAATTTCAA___CTGCAGCACAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGAATTATTTTGCACCACTGGATGTTGTTTACTG___CTTTGAAGCCTATGAATCATTACCCTTCAGAACTGAGAGCCAAG|CTCTGTCTGTGTTCCAAAGAAGATGTAGAGGAGCAGCTGCTGACAGATCCAAGCAGGGCAACTGTAACAGATAAAGAACGTGTCAAACGGTGGAAAATAAGATGTGGACCAAGAAGCAGCTTGTCAAGGCAAATCTTTCTGAAATTCTTCATTTAACTTCCTCAATTATGG LLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYcfeayeslpfrtesq|alsvfqrrcrgaaadrskqgncnr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17518 TESMIN::CPT1A ENSG00000132749.11::ENSG00000110090.13 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3052 TRUE 1152 TESMIN ENSG00000132749.11 protein_coding - - chr11:68707440-68751520:- chr11:68747208:- chr11:68474908-68518988:- chr11:68514676:- CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68794911:- chr11:68522088-68611878:- chr11:68562379:- chr11:68742985,chr11:68742987,chr11:68743002 chr11:68798876,chr11:68798876,chr11:68799159 NA NA chr11:68510453,chr11:68510455,chr11:68510470 chr11:68566344,chr11:68566344,chr11:68566627 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Choline/Carnitine_o-acyltransferase(85%) |Carn_acyltransf(80%) 3 2 1 134 1174 ENST00000255087.10 ENST00000376618.6 upstream downstream none CAAGTAATAATCCGGAAGAAGCAACTTTGCAGAATCTTCTTGCTCAGGAATCCTGTTGCAAGTTCCCATCGTCCCAGGAACTAGAGGATGCCTCCTGCTGTTCTCTTAAGAAAGATTCCAACCCAATG|GATCTGCTGTATATCCTTCCAACTCACATTCAGGCAGCAAGAGCCGGCAACGCCATCCATGCCATCCTGCTTTACAGGCGCAAACTGGACCGGGAGGAAATCAAACCA___ATTCGTCTTTTGGGATCCACG...GCTCAGTGGGAGCGGATGTTTAATACTTCCCGGATCCCAGGAGAGGAGACAG___ACACCATCCAGCACATGAGAGACAGCAAGCACATCGTCGTGTACCATCG SNNPEEATLQNLLAQESCCKFPSSQELEDASCCSLKKDSNPM|DLLYILPTHIQAARAGNAIHAILLYRRKLDREEIKPIRLLGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17519 TESMIN::CPT1A ENSG00000132749.11::ENSG00000110090.13 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3052 TRUE 1152 TESMIN ENSG00000132749.11 protein_coding - - chr11:68707440-68751520:- chr11:68744991:- chr11:68474908-68518988:- chr11:68512459:- CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68796933:- chr11:68522088-68611878:- chr11:68564401:- chr11:68742985,chr11:68742987,chr11:68743002 chr11:68798876,chr11:68798876,chr11:68799159 NA NA chr11:68510453,chr11:68510455,chr11:68510470 chr11:68566344,chr11:68566344,chr11:68566627 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Choline/Carnitine_o-acyltransferase(89%) |Carn_acyltransf(84%) 0 1 4 77 856 ENST00000255087.10 ENST00000376618.6 upstream downstream none GAATCTTCTTGCTCAGGAATCCTGTTGCAAGTTCCCATCGTCCCAGGAACTAGAGGATGCCTCCTGCTGTTCTCTTAAGAAAGATTCCAACCCAATG___GTGA...CCTCAGTATCAAGATCAAAATAATTATCTACAGTCAG|GTGAGCGACTGGTGGGAGGAGTACATCTACCTCCGAGGACGAGGGCCGCTCATGGTGAACAGCAACTATTATGCCATG___GATCTGCTGTATATCCTTCCAACTCACATTCA PQYQDQNNYLQS|gerlvggvhlpprtraahgeqqllchgsavypsnsh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17524 TULP4::GTF2H5 ENSG00000130338.13::ENSG00000272047.4 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158314268:+ chr6:158653268-158932860:+ chr6:158735300:+ GTF2H5 ENSG00000272047.4 protein_coding + + chr6:158168350-158199344:+ chr6:158191977:+ chr6:158589382-158620376:+ chr6:158613009:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Transcription_factor_TFIIH_complex_subunit_Tfb5(82%) |Tfb5(0%) 1 1 1 174 1767 ENST00000367097.8 ENST00000607778.2 downstream upstream none GCAGCAGTGGAACATGGGCCTGTGCTTTGCAGtGAcTCCAACATCCTGTGCCTGTCCTGGAAGGGGCGTGTCCCCAAGAGTGAGAAGGAGAAGCCTGTGTG...CGAGGAGTGGTTGGGGTGACTTTCACCTCTAGTCACTGTCGCAGGGACAGGAGTACTCCACAGAGGATAAATTTCAACCTCCGGGGCCACAATAGCGAG|TGATCCTGCCATGAAGCAGTTTCTGCTGTACTTGGATGAGTCCAATGCCCTGGGGAAGAAGTTCATCATTCAAGACATTGATGACACTCACGTCTTTGTAATAGCAGAATTGGTTAATGTCCT RGVVGVTFTSSHCRRDRSTPQRINFNLRGHNSE|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17531 BMPR1B::UNC5C ENSG00000138696.11::ENSG00000182168.16 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BMPR1B ENSG00000138696.11 protein_coding + + chr4:94757955-95158448:+ chr4:94996134:+ chr4:95679106-96079599:+ chr4:95917285:+ UNC5C ENSG00000182168.16 protein_coding - + chr4:95162504-95549206:- chr4:95290820:+ chr4:96083655-96470357:- chr4:96211971:+ chr4:95053716 chr4:95280528 NA NA chr4:95974867 chr4:96201679 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' low none none none 0 1 4 18 3 ENST00000515059.6 unknown downstream upstream duplicates(1) GGACGCGGGAGCCGGGAGCGCAGCCGCGG___GTTCAGACTTCTGCTGATTCATAACCATTTGGCTCTGAGCTATGACAAGAGAGGAAACAAAAAGTTAAACAAGCAAGCCTGCCATAAGTGAGAAG|GAATTTACCACAAACACTTTCATAATATCATAACTCATAACCAGGAAGAGCGGTTAGAATGATCTGCAGCAAGTCAGCAGAAAG___CAGCCACAGGCAAGGGACGTCTTCTAG...AAGCAGGATTAGGATTAGGCAAGTGACAGGGTTGAGGCCtGGATAGACAGACCCCTCTATAGGAGTGACATCTCAGTATAAATCTGAATGAAAGAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bone morphogenetic protein receptor type-1B TKL STKR STKR1 O00238 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17549 TPST1::GALNT17 ENSG00000169902.15::ENSG00000185274.13 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPST1 ENSG00000169902.15 protein_coding + + chr7:66205317-66420543:+ chr7:66286709:+ chr7:65670304-65885530:+ chr7:65751696:+ GALNT17 ENSG00000185274.13 protein_coding + + chr7:71132144-71713600:+ chr7:71335550:+ chr7:70597130-71178585:+ chr7:70800536:+ chr7:66323616 chr7:71212404 NA NA chr7:65788603 chr7:70677390 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Sulfotransferase_family(100%)|Glycosyl_transferase_family_2(100%),Ricin-type_beta-trefoil_lectin_domain(100%) Sulfotransfer_1(100%),Sulfotransfer_3(100%)|Glycos_transf_2(100%),Ricin_B_lectin(100%) 2 0 0 186 0 ENST00000304842.6 ENST00000333538.10 downstream upstream none GCCAGTCAATGTAGGAGCTCTATCAAAATGGGTTGGGAAGATACCGCCAGATGTTTTACAAGACATGGCAGTGATTGCTCCTATGCTTGCCAAGCTTGGATATGACCCATATGCCAACCCACCTAACTACGGAAAACCTGATCCCAAAATTATTGAAAACACTCGAAGG|GCTTATCCAAATCCCTTGGGCTCATTGAAG PVNVGALSKWVGKIPPDVLQDMAVIAPMLAKLGYDPYANPPNYGKPDPKIIENTRR|aypnplgsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17562 SCAF4::KCNE1 ENSG00000156304.15::ENSG00000180509.13 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3057 TRUE 1153 SCAF4 ENSG00000156304.15 protein_coding - - chr21:31671000-31732118:- chr21:31688307:- chr21:33043313-33104431:- chr21:33060620:- KCNE1 ENSG00000180509.13 protein_coding - - chr21:34446688-34512214:- chr21:34471567:- chr21:35818986-35884512:- chr21:35843865:- chr21:31687568 chr21:34473609 NA NA chr21:33059881 chr21:35845907 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Slow_voltage-gated_potassium_channel(100%) CID(100%),RRM_1(100%)|ISK_Channel(100%) 41 23 54 469 97 ENST00000286835.12 unknown upstream downstream duplicates(71),low_entropy(1),mismatches(6) CTTGGTGTTACTTATATTCCATGGGACAAAGTCAAGCCTGAGGAACTGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGACACACTTAACCCAG___ATTGGAAAGGAATTCCTAAGAAGCCTGAAAATGAAGTTGCTCAAAATGGAGGTGCTGAAACCTCACACACAGAACCAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGTGCCACCTCCACAG|ATATGTGAAGATTTATTGACCATAAATTTACTGCTGATTTATAACCTAACTGCATTTTGATCATAGAGCCAAGCACGTATGTAAAACTAATATTTAAAATGTTCTTGAGACTTCTTTCATGATCTAGTACATGGCCAAATGGTAAAAAAAGTTCCGTGAACACTTGTTAAAAAAATGCATATTGTTTATTGGTTGGGTGTAGTGCTCTCTCTATATATATATTTAATGAACTTTGTTAATTTCATCACTCAAATATTCTATATGCT LGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQ|icedlltinllliynltaf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17563 SCAF4::KCNE1 ENSG00000156304.15::ENSG00000180509.13 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3057 TRUE 1153 SCAF4 ENSG00000156304.15 protein_coding - - chr21:31671000-31732118:- chr21:31688307:- chr21:33043313-33104431:- chr21:33060620:- KCNE1 ENSG00000180509.13 protein_coding - - chr21:34446688-34512214:- chr21:34458764:- chr21:35818986-35884512:- chr21:35831062:- chr21:31687568 chr21:34473609 NA NA chr21:33059881 chr21:35845907 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Slow_voltage-gated_potassium_channel(100%) CID(100%),RRM_1(100%)|ISK_Channel(100%) 1 3 9 469 27 ENST00000286835.12 ENST00000399286.3 upstream downstream duplicates(8) TGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGACACACTTAACCCAG___ATTGGAAAGGAATTCCTAAGAAGCCTGAAAATGAAGTTGCTCAAAATGGAGGTGCTGAAACCTCACACACAGAACCAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGTGCCACCTCCACAG|GAAAAATCCCTCTGCTTTCTCTGGCCAGTTTCACACAATCATCAGGTGAGCCGAGGATCCATTGGAGGAAGGCATTATCTGTATCCAGAGGAAATAGCCAAGGATATTCAG___AGGTGTGCCTGGGAAGTTTGAGCTGCAGCAGTGGAACCTTAATGCCCAGGATGATCCTGTCTAACACCACAGCGGTGACGCCC...CCTGGCCCGCAGGTCCCCCCGCAGCAGTGACGGCAAGCTGGAGGCCCTCTACGTCCTCATGGTACTGGGATTCTTCGGCTTCTTCACCCTGGGCATCATGC ESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQ|ekslcflwpvshnhqvsrgsiggrhylypeeiakdiqrcawev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17564 SCAF4::KCNE1 ENSG00000156304.15::ENSG00000180509.13 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3057 TRUE 1153 SCAF4 ENSG00000156304.15 protein_coding - - chr21:31671000-31732118:- chr21:31688307:- chr21:33043313-33104431:- chr21:33060620:- KCNE1 ENSG00000180509.13 protein_coding - - chr21:34446688-34512214:- chr21:34458736:- chr21:35818986-35884512:- chr21:35831034:- chr21:31687568 chr21:34473609 NA NA chr21:33059881 chr21:35845907 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Slow_voltage-gated_potassium_channel(100%) CID(100%),RRM_1(100%)|ISK_Channel(100%) 1 2 9 469 32 ENST00000286835.12 ENST00000399284.1 upstream downstream duplicates(6) TGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGACACACTTAACCCAG___ATTGGAAAGGAATTCCTAAGAAGCCTGAAAATGAAGTTGCTCAAAATGGAGGTGCTGAAACCTCACACACAGAACCAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGTGCCACCTCCACAG|TTTCACACAATCATCAGGTGAGCCGAGGATCCATTGGAGGAAGGCATTATCTGTATCCAGAGGAAATAGCCAAGGATATTCAG___AGGTGTGCCTGGGAAGTTTGAGCTGCAGCAGTGGAACCTTAATGCCCAGGATGATCCTGTCTAACACCACAGCGGTGACGCCC ESFCEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQ|fhtiir* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17565 SCAF4::KCNE1 ENSG00000156304.15::ENSG00000180509.13 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3057 TRUE 1153 SCAF4 ENSG00000156304.15 protein_coding - - chr21:31671000-31732118:- chr21:31688307:- chr21:33043313-33104431:- chr21:33060620:- KCNE1 ENSG00000180509.13 protein_coding - - chr21:34446688-34512214:- chr21:34449684:- chr21:35818986-35884512:- chr21:35821982:- chr21:31687568 chr21:34473609 NA NA chr21:33059881 chr21:35845907 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Slow_voltage-gated_potassium_channel(100%) CID(100%),RRM_1(100%)|ISK_Channel(100%) 0 1 3 469 33 ENST00000286835.12 ENST00000399286.3 upstream downstream duplicates(1) AAACCTCACACACAGAACCAGTATCACCCATACCTAAACCATTACCTGTGCCTGTCCCTCCTATTCCTGTTCCTGCACCTATAACAGTGCCACCTCCACAG|AGGTGTGCCTGGGAAGTTTGAGCTGCAGCAGTGGAACCTTAATGCCCAGGATGATCCTGTCTAACACCACAGCGGTGACGCCCTTTCTGACCAAGCTGTGGCAGGAGACAGTTCAGCAGGGTGGCAACATGTCGGGCCTGGCCCGCAGGTCCCCCCGCAGCAGTGACGGCAAGCTGGAGGCCCTCTACGTCCTCATGGTACTGGGATTCTTCGGCTTCTTCACCCTGGGCATCATGC TSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQ|rcawev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17566 OAZ1::JSRP1 ENSG00000104904.12::ENSG00000167476.10 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA OAZ1 ENSG00000104904.12 protein_coding + + chr19:2269509-2273490:+ chr19:2271530:+ chr19:2269508-2273489:+ chr19:2271529:+ JSRP1 ENSG00000167476.10 protein_coding - + chr19:2252252-2269759:- chr19:2261965:+ chr19:2252251-2269758:- chr19:2261964:+ NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none none none 41 20 32 8694 98 ENST00000592787.2 unknown downstream upstream duplicates(46),mismatches(4) GCGGAGAGACGCAGCGGAGGTTTTCCTGGTTTCGGACCCCAGCGGCCGGATGGTGAAATCCTCCCTGCAGCGGATCCTCAATAGCCACTGCTTCGCCAGAGAGAAGGAAGGGGATAAACCCAGCGCCACCATCCACGCCAGCCGCACCATGCCGCTCCTAAGCCTGCACAGCCGCGGCGGCAGCAGCAGTGAGAG___TTCCAGGGTCTCCCTCCACTGCTGTAGTAACCCGGGTCCGGGGCCTCGGTGGTGCTCCTGATGCCCCTCACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATAGTCAGAGGGATCACAATCTTTCAGCTAACTTATTCTACTCC|TGACGTTCAAGATGGCAGGGGAGGTGAGCAGCGCCCCCTAGGGCCTGAGAAGCTCATGGAGCAAGAACAAGAAATAGACCTTTCCTGGTTTGCAGG...ATCTATTTATTTTTGAATGGG...___GCTGGAGTGCAGCGGCG...GCTCACTGCAACCTCTGCCTCAAGGTGTGGATTTCAACGTGCGCAGTCTCCTGGGACCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17568 SLC35E2B::KIAA2013 ENSG00000189339.12::ENSG00000116685.17 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1683 TRUE 3058 TRUE 1154 SLC35E2B ENSG00000189339.12 protein_coding - - chr1:1659529-1692795:- chr1:1692449:- chr1:1590990-1624234:- chr1:1623888:- KIAA2013 ENSG00000116685.17 protein_coding - - chr1:11919591-11926428:- chr1:11923489:- chr1:11979648-11986485:- chr1:11983546:- chr1:1682156,chr1:1682161,chr1:1682164 chr1:11925218,chr1:11925220,chr1:11925223 NA NA chr1:1613595,chr1:1613600,chr1:1613603 chr1:11985275,chr1:11985277,chr1:11985280 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Uncharacterized_conserved_protein_(DUF2152)(45%) |DUF2152(23%) 11 21 26 144 657 ENST00000617444.5 ENST00000376572.8 upstream downstream duplicates(12),mismatches(14) CCCGGCTCCGTGGCTCTGGGGCACTGAGGAGCGGCGCCCGCGGGGCAGCGAGGAGCCaGATGCAGGGTTCTGCGCGTCATTTCCGGTCCCGCGGGCGCCCCGTGAAGCCCACCTGGATCCGCCAGCGCTGTGCCACTCCCCAGTGCCGAGCTCCGAGCTGTCTCCGCGGCCTCGCGCCCGGCCCCTCCACCGCGCGCCTCTCAGGCCCCGCCCGCCAGCGTCCCTTTGTTGTGAAGGCGCCGGGGCCTAGCGCTATGCCTGCGGCGGAGACTGCATCAGGCTCTCG|GAGTGGAAATGAAGAAGATCACTGACACCCACACGCCGTCTGGCCTCACCGTGAACCTGACGCTCTATTACATGCTCTCCTGCTCGCCAGCCCCACTGCTCAGCCCCTCCCTGAGCCACAGGGAGCGAGACCAGATGGAGTCGACGCTCAACTATGAAGATCACTGCTTCAGCGGGCACGCCACCATGCACGCCGAGAACCTGTGGCCGGGGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17569 SLC35E2B::KIAA2013 ENSG00000189339.12::ENSG00000116685.17 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1684 TRUE 3058 TRUE 1154 SLC35E2B ENSG00000189339.12 protein_coding - - chr1:1659529-1692795:- chr1:1690976:- chr1:1590990-1624234:- chr1:1622415:- KIAA2013 ENSG00000116685.17 protein_coding - - chr1:11919591-11926428:- chr1:11923489:- chr1:11979648-11986485:- chr1:11983546:- chr1:1682156,chr1:1682161,chr1:1682164 chr1:11925218,chr1:11925220,chr1:11925223 NA NA chr1:1613595,chr1:1613600,chr1:1613603 chr1:11985275,chr1:11985277,chr1:11985280 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Uncharacterized_conserved_protein_(DUF2152)(45%) |DUF2152(23%) 6 1 37 82 657 ENST00000614300.4 ENST00000376572.8 upstream downstream duplicates(19),mismatches(6) GGGGGCCCTTTCCACCTATAGCCAGCAAGGAACTGAACCCAGCCAGCGTCCACCTGAGTGAGCTCAGAGGTGGGCCTCAGCCCCAGcTGAGCCTTCGGATGAGGTCACAGCCCTGGTCCATGGTGTGACTGCAGCTTCAGGAGGGACCTTAAGCCAGAGGTGCCTGGCTAAGCTTCCCGCAGATTGCTGCCCCACAGGAGCCAACATCAAAAGCATTTGTTGTTTTGAGGTG|GAGTGGAAATGAAGAAGATCACTGACACCCACACGCCGTCTGGCCTCACCGTGAACCTGACGCTCTATTACATGCTCTCCTGCTCGCCAGCCCCACTGCTCAGCCCCTCCCTGAGCCACAGGGAGCGAGACCAGATGGAGTCGACGCTCAACTATGAAGATCACTGCTTCAGCGGGCACGCCACCATGCACGCCGAGAACCTGTGGCCGGGGCGGCTGTCCTCCGTCCAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17570 ARID2::BICD1 ENSG00000189079.18::ENSG00000151746.15 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45731314:+ chr12:46123489-46301823:+ chr12:46125097:+ BICD1 ENSG00000151746.15 protein_coding + - chr12:32106835-32383633:+ chr12:32312190:- chr12:32259769-32536567:+ chr12:32465124:- chr12:45755881,chr12:45755878 chr12:32331582,chr12:32331585 NA NA chr12:46149664,chr12:46149661 chr12:32484516,chr12:32484519 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none ARID/BRIGHT_DNA_binding_domain(92%)| ARID(1%)| 16 13 29 144 93 ENST00000334344.11 unknown downstream downstream duplicates(34),mismatches(6) AAAGGGACTCGCTTTCCTGGACGAGCTGCGGCAGTTCCACCACAGCAGAGG___GTCGCCTTTTAAAAAAATCCCTGCGGTGGGTGGGAAGGAGCTGGATCTTCACGGTCTCTACACCAGAGTCACTACTTTAGGCGGATTCGCGAAG___GTTTCTGAGAAGAATCAGTGGGGAGAAATTGTTGAAGAGTTCAACTTTCCCAGAAGTTGTTCTAACGCTGCCTTTGCTTTAAAACAGTATTACTTGCG|TTCCAACAAAGGCATGaaAGAGACAAATGGTGGGGCTAATTTATTACCTTCCCCTTTTGAATGAGCCTCAGAGAAGCAAAACAATTCACTCAACATTCCTGATAATTAAGGCAGAG___AACAATGATCCTTAGGTCATGCAGACCTCCTTGATGGCATCCAGAA KGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLr|snkgmketngganllpspfe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 17571 DUS1L::CCDC57 ENSG00000169718.18::ENSG00000176155.21 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1685 TRUE 3059 TRUE 1155 DUS1L ENSG00000169718.18 protein_coding - - chr17:82057506-82065887:- chr17:82062861:- chr17:80015382-80023763:- chr17:80020737:- CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82101866:- chr17:80059336-80170754:- chr17:80059742:- chr17:82062293,chr17:82062296 chr17:82108688,chr17:82108688 NA NA chr17:80020169,chr17:80020172 chr17:80066564,chr17:80066564 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dihydrouridine_synthase_(Dus)(55%)| Dus(60%)| 20 14 17 2078 549 ENST00000306796.10 ENST00000694881.1 upstream downstream duplicates(25),low_entropy(1),mismatches(1) GCGACGCCAACTACCGGAAGGAGAACCTGTACTGCGAGGTGTGCCCCGAGGACCGGCCCCTCATCGTGCAG___TTCTGTGCCAATGACCCGGAGGTGTTTGTTCAGGCGGCTCTCCTGGCTCAGGATTACTGTGACGCCATTGACCTGAACTTGGGCTGCCCACAGATGATAGCCAAGAGAG___GTCACTATGGCGCCTTTCTGCAGGACGAGTGGGACCTGCTCCAAAGAATGA___TTTTGCTGGCCCACGAGAAACTCTCTGTTCCTGTCACaTGCAAAATCCGTGTCTTCCCGGAGATTGACAAGACCGTGAGGTACGCCCAGATGCTGGAGAAGGCCGGCTGCCAG|AGCTCCCAGCTCCTCCAGCAGCCGACAGGAGGCCCGTCAAGATGCAGGCAGGCATTGCCACCCCAGGGATGAAGACAGCAGCCCAGGCAAAGGCCAAGACCACAGGAGCCTCCCGGTCTCATCCTGCAAAAGCTAAAGGCTGCCAGAGGCCCCCCAAGATCCGTAACTACAACATTATGGACTGACTTCCTCCCCCCACCCCGCCCCACTAAGGGGTGCTCGGGGCCTCCGCATGGTGCCTGTGCTTTCACCTACGTGTTGTGGGGGGGTGTGGGCACAGCGTGCAGGGTGGAGGCAGGG DANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQ|ssqllqqptggpsrcrqalppqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver,Nasopharynx no_match TRUE Liver hepatocellular carcinoma LIVER no_match 80023489|80023489 FALSE|FALSE 80092070|80086473 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17572 DUS1L::CCDC57 ENSG00000169718.18::ENSG00000176155.21 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3059 TRUE 1155 DUS1L ENSG00000169718.18 protein_coding - - chr17:82057506-82065887:- chr17:82062861:- chr17:80015382-80023763:- chr17:80020737:- CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82107621:- chr17:80059336-80170754:- chr17:80065497:- chr17:82062293,chr17:82062296 chr17:82108688,chr17:82108688 NA NA chr17:80020169,chr17:80020172 chr17:80066564,chr17:80066564 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dihydrouridine_synthase_(Dus)(55%)| Dus(60%)| 1 1 25 2078 27 ENST00000306796.10 ENST00000392345.6 upstream downstream duplicates(11),mismatches(2) CCCGAGGACCGGCCCCTCATCGTGCAG___...CGCCATTGACCTGAACTTGGGCTGCCCACAGATGATAGCCAAGAGAG___GTCACTATGGCGCCTTTCTGCAGGACGAGTGGGACCTGCTCCAAAGAATGA___TTTTGCTGGCCCACGAGAAACTCTCTGTTCCTGTCACaTGCAAAATCCGTGTCTTCCCGGAGATTGACAAGACCGTGAGGTACGCCCAGATGCTGGAGAAGGCCGGCTGCCAG|GGCCCCATTCATTCTGGAACCTGCAGACCAACTCCATCCGCCCATCCTCACAGTGTGCCGAGCGCCAGGTCCAGAAGCACGCACCTACCTGGGGGCCTCTTCCTCCTTTCTGGCGGGGGTCCGCTTTGGCCCCTGATGCTAACCTCGCCCCGTGTGCCGTGCAGCTGGAGTCAAACGGAGGCGCAGAGACGCCATGGAGGGTGACAAG...ACACAGCAGGtTTCGAGGC?GCCACTCCCCACTCCCCACTCCCGCGGCATCTGTGCCCCACCCGGGTGCCAAGCCACTGTGCCATGCATCCCCCCACCCCC AIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQ|gpihsgtcrptpsahphsvpsarsrsthlpgglfllsgggplwplmltsprvpcswsqteaqrrhgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver,Nasopharynx no_match TRUE Liver hepatocellular carcinoma LIVER no_match 80023489|80023489 FALSE|FALSE 80092070|80086473 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17574 DUS1L::CCDC57 ENSG00000169718.18::ENSG00000176155.21 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3059 TRUE 1155 DUS1L ENSG00000169718.18 protein_coding - - chr17:82057506-82065887:- chr17:82064823:- chr17:80015382-80023763:- chr17:80022699:- CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82101866:- chr17:80059336-80170754:- chr17:80059742:- chr17:82062293,chr17:82062296 chr17:82108688,chr17:82108688 NA NA chr17:80020169,chr17:80020172 chr17:80066564,chr17:80066564 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Dihydrouridine_synthase_(Dus)(21%)| Dus(5%)| 1 1 0 1000 549 ENST00000306796.10 ENST00000694881.1 upstream downstream none GCCGGCGCCACGGGGCACAGCTCTGCTACACGCCCATGCTGCATGCCCAGGTCTTTGTCCGCGACGCCAACTACCGGAAGGAGAACCTGTACTGCGAGGTG...CCCGAGGACCGGCCCCTCATCGTGCAG|AGCTCCCAGCTCCTCCAGCAGCCGACAGGAGGCCCGTCAAGATGCAGGCAGGCATTGCCACCCCAGGGATGAAGA...ATTATGGACTGACTTCCTCCCCCCACCCCGCCCCACTAAGGGGTGCTCGGGGCCTCCGCATGGTGCCTGTGCTTTCACCTACGTGTTGTGGGGGGGTGTGG PEDRPLIVQ|ssqllqqptggpsrcrqalppqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver,Nasopharynx no_match TRUE Liver hepatocellular carcinoma LIVER no_match 80023489|80023489 FALSE|FALSE 80092070|80086473 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17575 SAMD4B::PPFIA3 ENSG00000179134.16::ENSG00000177380.14 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3060 TRUE 1156 SAMD4B ENSG00000179134.16 protein_coding + + chr19:39342421-39385710:+ chr19:39357089:+ chr19:39833061-39876350:+ chr19:39847729:+ PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49148083:+ chr19:49622801-49654283:+ chr19:49651340:+ chr19:39369154,chr19:39369152 chr19:49148033,chr19:49148028 NA NA chr19:39859794,chr19:39859792 chr19:49651290,chr19:49651285 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |SAM_domain_(Sterile_alpha_motif)(67%) |SAM_1(75%),SAM_2(100%) 10 9 30 228 88 ENST00000610417.5 ENST00000334186.9 downstream upstream duplicates(20),mismatches(9) TGACGGCGCTGGCCCTCGCCACCGCCGTCCCCCGACCCTGGCCCCAGGCCCGGCACCATGATGTTCCGAGACCAGGTGGGCATCCTCGCTGGCTGGTTCAAAGGCTGGAATGAGTGTGAGCAGACAGTGGCCCTCCTGTCACTTCTGAAACGGGTCACCCGTACCCAGGCCCGCTTCCTGCAGCTCTGCCTGGAGCACTCACTGGCGGACTGCAATGACATCCACCTGCTGGAGTCGGAGGCCAACAGTGCTG|ATCCTGGCATATGGCGACATGAACCACGAGTGGGTGGGGAACGACTGGCTGCCCAGCCTGGGGCTGCCCCAATACCGCAGCTACTTCATGGAGTCGCTGGTGGACGCTCGAATGTTAGATCACCTTAACAAGAAGGAGCTCCGGGGCCAACTCAAGATGGTGGACAGCTTTCACAG___GGTGAGTCTACATTATGGGATTATGTGCCTGAAACGGCTCAACTATGACCGGAAGGACCTGGAGCGGAGGCGGGAAGAAAGTCAGACCCAGATCCGAG MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLESEANSA|dpgiwrheprvggerlaaqpgaapipqllhgvaggrsnvrsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17576 SAMD4B::PPFIA3 ENSG00000179134.16::ENSG00000177380.14 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3060 TRUE 1156 SAMD4B ENSG00000179134.16 protein_coding + + chr19:39342421-39385710:+ chr19:39357089:+ chr19:39833061-39876350:+ chr19:39847729:+ PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49148666:+ chr19:49622801-49654283:+ chr19:49651923:+ chr19:39369154,chr19:39369152 chr19:49148033,chr19:49148028 NA NA chr19:39859794,chr19:39859792 chr19:49651290,chr19:49651285 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |SAM_domain_(Sterile_alpha_motif)(41%) |SAM_1(4%),SAM_2(36%) 8 1 9 228 130 ENST00000610417.5 ENST00000334186.9 downstream upstream duplicates(9),mismatches(3) CCAGAAACGTCCTTAAGCCCTGGCCCTCAGGGGAAAGGTAACAGGAGGCCAGAGCCGGGACCATGTGACGGCGCTGGCCCTCGCCACCGCCGTCCCCCGACCCTGGCCCCAGGCCCGGCACCATGATGTTCCGAGACCAGGTGGGCATCCTCGCTGGCTGGTTCAAAGGCTGGAATGAGTGTGAGCAGACAGTGGCCCTCCTGTCACTTCTGAAACGGGTCACCCGTACCCAGGCCCGCTTCCTGCAGCTCTGCCTGGAGCACTCACTGGCGGACTGCAATGACATCCACCTGCTGGAGTCGGAGGCCAACAGTGCTG|GGTGAGTCTACATTATGGGATTATGTGCCTGAAACGGCTCAACTATGACCGGAAGGACCTGGAGCGGAGGCGGGAAGAAAGTCAGACCCAGATCCGAG___ACGTG...___ATCCCCACGCAGAATGCACAG___GCCCGGCAGCTTCTGGAGAAGGAA MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLESEANSA|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17577 THEM6::FANCI ENSG00000130193.8::ENSG00000140525.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1686 FALSE NA FALSE NA THEM6 ENSG00000130193.8 protein_coding + + chr8:142727223-142736927:+ chr8:142727859:+ chr8:143808641-143818345:+ chr8:143809277:+ FANCI ENSG00000140525.20 protein_coding + + chr15:89243945-89317261:+ chr15:89301326:+ chr15:89787176-89860492:+ chr15:89844557:+ chr8:142728529,chr8:142728529,chr8:142728529 chr15:89300466,chr15:89300472,chr15:89300463 NA NA chr8:143809947,chr8:143809947,chr8:143809947 chr15:89843697,chr15:89843703,chr15:89843694 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Thioesterase-like_superfamily(89%)|FANCI_solenoid_3(30%),FANCI_solenoid_4(100%) 4HBT_2(4%)|FANCI_S3(34%),FANCI_S4(100%) 10 21 12 135 321 ENST00000336138.4 ENST00000300027.12 downstream upstream duplicates(10),mismatches(2) GTGCGCGCGCCACCGCCGCTCGCTGCGCCTGCTGGAGCCCTTCGAGGTGCGCACCCGCCTGCTGGGCTGGGACGACCGCGCGTTCTACCTGGAGGCGCGCTTTGTCAGCCTGCGGGACGGtTTCGTGTGCGCGCTGCTGCGCTTCCGGCAGCACCTGCTGGGCACCTCACCCGAGCGCGTCGTGCAGCACCTGTGCCAGCGCAGG|AGGTCCTTGTTGAATTTACTTAGCAGTCAAGAGGAAGATTTTAATAGCAAAGAAGCCCTCCTGCTAGTCACGGTTCTTACCAGTTTGTCCAAGTTACTGGAGCCCTCCTCTCCTCAG___TTTGTGCAGATGTTATCCTGGACATCAAAGATTTGCAAGGAAAACAGCCGGG___AGGATGCCTTGTTTTGCAAGAGCTTGATGAACTTGCTCTTCAGCCTGCATGTTTCGTATAAGAGTCCTGTCATTCTGCTGCGTGACTTGTCCCAGGATATCCACGGGCATCTGGGAGATATAGACCAG___GATGTAGAGGTGGAGAAAACAAACCACTTTGCAATAGTGAATTTGAGAACGGC CARHRRSLRLLEPFEVRTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRR|RSLLNLLSSQEEDFNSKEALLLVTVLTSLSKLLEPSSPQFVQMLSWTSKICKENSREDALFCKSLMNLLFSLHVSYKSPVILLRDLSQDIHGHLGDIDQDVEVEKTNHFAIVNLRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17578 EEIG1::CIZ1 ENSG00000167106.12::ENSG00000148337.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1687 FALSE NA FALSE NA EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127979992:- chr9:130702861-130743268:- chr9:130742271:- CIZ1 ENSG00000148337.22 protein_coding - - chr9:128161251-128204383:- chr9:128190862:- chr9:130923530-130966662:- chr9:130953141:- chr9:127966211,chr9:127966213 chr9:128195821,chr9:128195820 NA NA chr9:130728490,chr9:130728492 chr9:130958100,chr9:130958099 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(29%)|Zinc-finger_double-stranded_RNA-binding(100%) NT-C2(0%)|UPF0184(100%),zf-C2H2_jaz(100%) 19 2 21 223 472 ENST00000373095.6 ENST00000538431.5 upstream downstream duplicates(24),low_entropy(41),mismatches(11) CGGGATCCGGCTCTGGTGTTTTGAGGAGGGGGTGTGGTGTAGGGAAAGGAATCCCGTCCCTCTCCACCTTTTTTCGCCTTCGGGGCTTCAGACTCAGGGAACTCGCTCATGGCTTTCTTGATGAAGAAGAAGAAATTCAAATTCCAAACTACTTTCACCCTGGAGGAGCTGACTGCGGTTCCCTTCGTGAACGGGGTCCTCTTCTGCAAGGTCCGGCTGCTGGATGGAGGGGATTTTGTCAGCTTGTCGTCAAG|CCACCATGTTCAGCCAGCAGCAGCAGCAGCAGCTCCAGCAACAGCAGCAGCAGCTCCAGCAGTTACAGCAGCAGCAGCTCCAGCAGCAGCAATTGCAGCAGCAGCAGTTACTGCAGCTCCAGCAGCTGCTCCAGCAGTCCCCACCACAGGCCCCGTTGCCCATGGCTGTCAGCCG___GGGGCTCCCCCCGCAGCAGCCACAGCAGCCGCTTCTGAATCTCCAGGGCACCAACTCAGCCTCCCTCCTCAACGGCTCCATGCTGCAGAGAGCTTTGCTTTTACAGCAGTTGCAAG___GACT MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSs|hhvqpaaaaaapataaaapavtaaaapaaaiaaaavtaapaaapavpttgpvahgcqpgappaaataaasespghqlslppqrlhaaesfaftavar NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17579 BACH2::ENSG00000288714 ENSG00000112182.16::ENSG00000288714.1 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3061 TRUE 1157 BACH2 ENSG00000112182.16 protein_coding - - chr6:89926528-90296843:- chr6:90206569:- chr6:90636247-91006562:- chr6:90916288:- ENSG00000288714 ENSG00000288714.1 lncRNA + + chr6:140148490-140785421:+ chr6:140363129:+ chr6:140469627-141106558:+ chr6:140684266:+ chr6:90099843,chr6:90099846 chr6:140358773,chr6:140358770 NA NA chr6:90809562,chr6:90809565 chr6:140679910,chr6:140679907 NA NA sense sense unknown 5'UTR/splice-site intron inversion high none none none 2 2 23 41 5 ENST00000406998.7 ENST00000684511.1 upstream upstream duplicates(8),mismatches(1),multimappers(1) CGGAAAAGGACGCAAAGTTCTCCGGCGAG___...GCAG___TGCAGCTGTCTGCTTCAGAAAGTGAGGGCTCCAGGAATGAGGAGAATCTTCAAGAACTTCCTCGCACTGTGACATGTCTGATCCCTTGCTCCCATCCCTGCAGCATGAACAAG|GCTCTCTCTTTGCCTGCTGCCATCCACGTAAAACATGACTTGCTCCTCCTTGCCTTCTGCCATGACTGTGAGGCCTCCCCAGCCACATGGAACT___AGATTAAAATGCCATGAAAAAGAAAAAATTATAGAAAAGCAAAAAGAGCTGAATGCAGTGAATGAACATCTGTGAATGAAGTTGAGAgGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4465 chr6:140683814-140683883:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17580 BACH2::ENSG00000288714 ENSG00000112182.16::ENSG00000288714.1 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3061 TRUE 1157 BACH2 ENSG00000112182.16 protein_coding - - chr6:89926528-90296843:- chr6:90206569:- chr6:90636247-91006562:- chr6:90916288:- ENSG00000288714 ENSG00000288714.1 lncRNA + + chr6:140148490-140785421:+ chr6:140565564:+ chr6:140469627-141106558:+ chr6:140886701:+ chr6:90099843,chr6:90099846 chr6:140358773,chr6:140358770 NA NA chr6:90809562,chr6:90809565 chr6:140679910,chr6:140679907 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 2 1 15 41 31 ENST00000406998.7 ENST00000684511.1 upstream upstream duplicates(9),multimappers(2) CGGAAAAGGACGCAAAGTTCTCCGGCGAG___TGCAGCTGTCTGCTTCAGAAAGTGAGGGCTCCAGGAATGAGGAGAATCTTCAAGAACTTCCTCGCACTGTGACATGTCTGATCCCTTGCTCCCATCCCTGCAGCATGAACAAG|AGATTAAAATGCCATGAAAAAGAAAAAATTATAGAAAAGCAAAAAGAGCTGAATGCAGTGAATGAACATCTGTGAATGAAGTTGAGAgGGTATATGTG___GGGCAGACTAGAATTGCAGTGCACAGATACAAGAATGTTGCCTGCTTTGGAGCCAAGACTGCCTTCCGGATAAAGGGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4465 chr6:140683814-140683883:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17581 STK24::DOCK9 ENSG00000102572.15::ENSG00000088387.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1688 TRUE 3062 TRUE 1158 STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98576745:- chr13:99097439-99230194:- chr13:99228999:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98810291:- chr13:99445683-99738879:- chr13:99462545:- chr13:98541307,chr13:98541309 chr13:98813494,chr13:98813493 NA NA chr13:99193561,chr13:99193563 chr13:99465748,chr13:99465747 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |DHR-2__Lobe_A(63%) |DHR-2(38%) 2 21 2 139 264 ENST00000539966.6 ENST00000448493.7 upstream downstream duplicates(14),mismatches(1) ATCGTCGCGGCCCGGCCGTCCCGTCCCAGGAAGTGGCCGTCCTGAGCGCCATGGCTCACTCCCCGGTGCAGTCGGGCCTGCCCGGCATGCAG|GATGTGCTGATGGAGCTCCTTGAGCAGTGCGCAGATGGACTCTGGAAAGCCGAGCGCTACGAGCTCATCGCCGACATCTACAAACTTATCATCCCCATTTATGAGAAGCGGAGGGATTTTGAG___AGGCTGGCCCATCTGTATGACACGCTGCACCGGGCCTACAGCAAAGTGACCGAGGTCATGCACTCGGGCCGCAGGCTTCTGGGGACCTACTTCCGGGTAGCCTTCTTCGGGCAG___GGATTCTTTGAAGATGAAGATGGAAAGGAGTATATTTACAAGGAACCCAAACTCACACCGCTGTCGGAAATTTCTCAGAGACTCCTTAAACTGTACTCGGATAAATTTGGTTCTGAAA MAHSPVQSGLPGMQ|DVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA TRUE Stomach,Liver,Breast no_match TRUE Liver hepatocellular carcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma LIVER,STOMACH,STOMACH no_match 99228999,99228999,99171497|99171497 TRUE,TRUE,FALSE|FALSE 99462545,99449507,99532926|99520631 TRUE,FALSE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17582 STK24::DOCK9 ENSG00000102572.15::ENSG00000088387.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3062 TRUE 1158 STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98575995:- chr13:99097439-99230194:- chr13:99228249:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98810291:- chr13:99445683-99738879:- chr13:99462545:- chr13:98541307,chr13:98541309 chr13:98813494,chr13:98813493 NA NA chr13:99193561,chr13:99193563 chr13:99465748,chr13:99465747 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |DHR-2__Lobe_A(63%) |DHR-2(38%) 1 1 3 7 264 ENST00000481288.1 ENST00000448493.7 upstream downstream duplicates(1),mismatches(1) CCGCGAGTTCCACTTGCAGTGGCTTTGCCCGGAGCCCCCGTGCACCTGCGGACCGGGGGAAAGTGCGAGTTGCAAACCTTCTGGAAGGAGGAATCCCTCGG...CGCGCACCAGGGTCCCGGGCCCGGCCCCGGGACCCTGGACTTTCACTTTGAGACTTGGTTGCATTTACAGGAATTCTTCGCCCAGTAAACCTCTCTTTCG|GATGTGCTGATGGAGCTCCTTGAGCAGTGCGCAGATGGACTCTGGAAAGCCGAGCGCTACGAGCTCATCGCCGACATCTACAAACTTATCATCCCCATTTATGAGAAGCGGAGGGATTTTGAG___AGGCTGGCCCATCTGTATGACACGCTGCACCGGGCCTACAGCAAAGTGACCGAGGTCATGCACTCGGGCCGCAGGCTTCTGGGGACCTACTTCCGGGTAGCCTTCTTCGGGCAG___GGATTCTTTGAAGATGAAGATGGAAAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA TRUE Stomach,Liver,Breast no_match TRUE Liver hepatocellular carcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma LIVER,STOMACH,STOMACH no_match 99228999,99228999,99171497|99171497 FALSE,FALSE,FALSE|FALSE 99462545,99449507,99532926|99520631 TRUE,FALSE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17584 CYTH1::USP36 ENSG00000108669.18::ENSG00000055483.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78782202:- chr17:76670130-76778379:- chr17:76778284:- USP36 ENSG00000055483.20 protein_coding - + chr17:78787381-78841441:- chr17:78797687:+ chr17:76783463-76837523:- chr17:76793769:+ chr17:78755430,chr17:78755418,chr17:78755409,chr17:78755403,chr17:78755398,chr17:78755390,chr17:78755455,chr17:78755448,chr17:78755446,chr17:78755439,chr17:78755436,chr17:78755432 chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392,chr17:78794392 NA NA chr17:76751512,chr17:76751500,chr17:76751491,chr17:76751485,chr17:76751480,chr17:76751472,chr17:76751537,chr17:76751530,chr17:76751528,chr17:76751521,chr17:76751518,chr17:76751514 chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474,chr17:76790474 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR inversion/5'-5' high none none none 0 11 1 68 558 ENST00000589296.5 unknown upstream upstream inconsistently_clipped(1) CGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTACG|GGCTGGTCGGGAATGTCACCAAAGAGGTTCCGATCTAGAGAAGCCTCAAAGCCTCTGTGTTGGGCGGTCTGTGGACACTGGTACCGGGAGAGCTCCTACCGTGACAGGCTCCCAGCGCAGCAGAGCCCACACAGAGAGCTCCCTCAGATCCAGACCGACAGCTCCCGGGAAGGGACGCCTTGTCTCCAGGAGGCTGCAGAACAAACCACGGTAGTCCTGACAGAGAGAAACGAGACCCGAATCTTCCCACTGCCACCCTCGG MEEDDSY|glvgnvtkevpi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17586 UBE3C::NISCH ENSG00000009335.19::ENSG00000010322.16 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE3C ENSG00000009335.19 protein_coding + + chr7:157138926-157269370:+ chr7:157207935:+ chr7:156931620-157062064:+ chr7:157000629:+ NISCH ENSG00000010322.16 protein_coding + - chr3:52455118-52493068:+ chr3:52457914:- chr3:52489134-52527084:+ chr3:52491930:- chr7:157208095 chr3:52463970 NA NA chr7:157000789 chr3:52497986 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none none IQ(100%)| 2 2 6 648 182 ENST00000348165.10 unknown downstream downstream duplicates(4),low_entropy(1) TACCGTTGCTTCAGGTGATATCCAGGGGTTCTCCTATGTCTTTTGAAGATTCTAGTCGAATCATCCCACTCTTTTAcCTTTTTAGCTCCTTGTTTAGTCAT...CTAATTTCCATACATGATAACGcATTCTTtGGTGATCCCATAGAAG___TTGTAGGTCAAAGACAATCATCAATGATGCCTTTTACTTTAGAAGAGCTGATAATGTTGTCTCGATGCCTTCGAGATGCATGCCTGGGGATCATCAAGTTGGCTTATCCAGAAACCAAGCCAGAAGTTCGAGAAGAATATATTACAGCATTTCAGAGTATTGGAGTTACTACTAGCTCTGAAATGCAACAATGCATACAGATGGAACAGAAAAGATGGATTCAGTTATTTAAG|GTCATGGAAGTCGCTGTAGCGGTGCTTTACTGTCCACTCATGGCTGCCATCAGTGACCTGGATGATGTAAACCTAAAAGGGGAAACCAACAGCCCTTGTGGCAAGGGAGCCCAGCAACAAGGAGTCTCCTCCCCCAGCAGCAAAAGCTGCAATTATCTTTCCCAATTATCTTTTATCAGTCTTTCTCTCTGCAACTCAGACCCACCCCAAGGCCAAAGTCAGGCTGCCCTTGCCCACCAGCCTCTGC LISIHDNaFFGDPIEVVGQRQSSMMPFTLEELIMLSRCLRDACLGIIKLAYPETKPEVREEYITAFQSIGVTTSSEMQQCIQMEQKRWIQLFK|vmevavavlycplmaaisdlddvnlkgetnspcgkgaqqqgvsspsskscnylsqlsfislslcnsdppqgqsqaalahqpl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17589 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102425291:+ chr14:102829278-102968814:+ chr14:102891628:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101818992:+ chr14:102228046-102394326:+ chr14:102285329:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(74%) 0 3 4 72 13 ENST00000359520.12 ENST00000422945.6 downstream upstream duplicates(1),mismatches(1) CAGGACTCTGTAAGCAAAGTGATCTAACCTTGTATGCGTCACGGCCCGGGCTCCGGCTATGGAAGGCTGATGTCCACGGGACTGTTCAAGCCACGTTTATCTTAAAAGATGCTTTTGCCGGGGGAGTCAAGCCTTTTGAACTGCACCCGCGTCTGGAATCCCCCAACAGTGGAAGTTGCAGCTTACCTGAGAGGCACCTGGGGCTTGTTTCATGTTTCTTTCAAGAAGGCTGGGTGCTGAGTTGGAATGAATATAGTATCTATCTCCTAGACACAGTCAACCAG|GGAACAAGTCCTGAAGAACCCTCAAGCCCTAAAGTACCACCTCCACTTCTTCCTGAGTTGCTGGTTCTTATTTTTGGTGGGCTTCAAGGAAGAG___ATGTTCCTCCTGCTGATCAAGAGAAGCTTTTTATCCAGAAGTTACGTCAGTGTTGCGTCCTCTTTGACTTTGTTTC GLCKQSDLTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQ|GTSPEEPSSPKVPPPLLPELLVLIFGGLQGRDVPPADQEKLFIQKLRQCCVLFDFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17590 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102425291:+ chr14:102829278-102968814:+ chr14:102891628:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101824014:+ chr14:102228046-102394326:+ chr14:102290351:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(70%) 2 1 4 72 14 ENST00000359520.12 ENST00000556307.5 downstream upstream duplicates(1),mismatches(1) AATGGAATGAAATTGTTCTCTGGAGATGACAAAGGCAAAATTGTTTATTCTTCTCTGGATCTAGACCAG___GGGCTCTGTAACTCCCAGCTGGTGTTGGAGGA...CAGGACTCTGTAAGCAAAGTGATCTAACCTTGTATGCGTCACGGCCCGGGCTCCGGCTATGGAAGGCTGATGTCCACGGGACTGTTCAAGCCACGTTTATCTTAAAAGATGCTTTTGCCGGGGGAGTCAAGCCTTTTGAACTGCACCCGCGTCTGGAATCCCCCAACAGTGGAAGTTGCAGCTTACCTGAGAGGCACCTGGGGCTTGTTTCATGTTTCTTTCAAGAAGGCTGGGTGCTGAGTTGGAATGAATATAGTATCTATCTCCTAGACACAGTCAACCAG|GCACAGTGCCCACTTGTTCCGTGGCACAGCCCCAGAGCTCCTGTTGAAGGAACAGACTCCAGGACTGACTTTCCACTTGATTTTCGGAGCTCGCACATCCCGAGAGATTCATGTTCAAGCTGCATTTTAGACATAG GLCKQSDLTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQ|aqcplvpwhsprapvegtdsrtdfpldfrsshiprdscsscildi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17591 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102425291:+ chr14:102829278-102968814:+ chr14:102891628:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101831701:+ chr14:102228046-102394326:+ chr14:102298038:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(63%) 0 1 3 72 7 ENST00000359520.12 ENST00000554442.5 downstream upstream mismatches(1) CAGGACTCTGTAAGCAAAGTGATCTAACCTTGTATGCGTCACGGCCCGGGCTCCGGCTATGGAAGGCTGATGTCCACGGGACTGTTCAAGCCACGTTTATCTTAAAAGATGCTTTTGCCGGGGGAGTCAAGCCTTTTGAACTGCACCCGCGTCTGGAATCCCCCAACAGTGGAAGTTGCAGCTTACCTGAGAGGCACCTGGGGCTTGTTTCATGTTTCTTTCAAGAAGGCTGGGTGCTGAGTTGGAATGAATATAGTATCTATCTCCTAGACACAGTCAACCAG|ATTGCAAATGCACAAGA...TCCCGtCCTGCCAGCCTTCTCCCCTGCCCTTCTGCCTCTACTCCCGACCTGCCAACCTTAGCCTAAAATCAGAGCTGCTAGAATCACACACACTGTCGTAG GLCKQSDLTLYASRPGLRLWKADVHGTVQATFILKDAFAGGVKPFELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQ|ianaq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17592 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102425291:+ chr14:102829278-102968814:+ chr14:102891628:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101836169:+ chr14:102228046-102394326:+ chr14:102302506:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(60%) 0 1 2 72 50 ENST00000359520.12 ENST00000554442.5 downstream upstream mismatches(1) CAGGACTCTGTAAGCAAAGTGATCTAACCTTGTATGCGTCACGGCCCGGGCTCCGGCTATGGAAGGCTGATGTCCACGGGACTGTTCAAGCCACGTTTATCTTAAAAGATGCTTTTGCCGGGGGAGTCAAGCCTTTTGAACTGCACCCGCGTCTGGAATCCCCCAACAGTGGAAGTT...ATCTATCTCCTAGACACAGTCAACCAG|TTGAGGCTGTGAAGCTGGGCAGGGTTTCAGCTGAGCTGAGGTTGGAAGTCCCTGACCTTCAGCTGTGGCCGCCTACGGAGCAGCAGGGAGAGCAAACCCATGGAGAACCCCGCGGCCCCCAAAGCATGGACGGAGCTGCCAGCCTTCTCCCCTGCCCTTCTTCCTCTACTCCCG IYLLDTVNQ|LRL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17593 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102414793:+ chr14:102829278-102968814:+ chr14:102881130:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101831701:+ chr14:102228046-102394326:+ chr14:102298038:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(63%) 1 0 1 108 7 ENST00000359520.12 ENST00000554442.5 downstream upstream none CAGGGTTGCAGTTTTTCAACTTGTATCTTCATTGCCAGGGAGAAATAAACAG___CTTCGGAGATTTGATGTCACTGGTATTCACAAAAATAGCATTACAGCTC...GTTCTCTGGAGATGACAAAGGCAAAATTGTTTATTCTTCTCTGGATCTAGACCAG___GGGCTCTGTAACTCCCAGCTGGTGTTGGAGGAGCCATCTTCCATTG...CTCTACTCTGCAAAGAAGTCTGCTCTTTTACACTGAAGAAAAGTCTGTAAGGCAAATTGGAACACAACCAAGGAAAAG|ATTGCAAATGCACAAGATTCGAG STLQRSLLFYTEEKSVRQIGTQPRKr|lqmhkir NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17594 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102414793:+ chr14:102829278-102968814:+ chr14:102881130:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101856686:+ chr14:102228046-102394326:+ chr14:102323023:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(44%) 1 0 0 108 1063 ENST00000359520.12 ENST00000694906.1 downstream upstream none TAAACAG___CTTCGGAGATTTGATGTCACTGGTATTCACAAAAATAGCATTACAGCTCTGGCTTGGAGCCCCAATGGAATGAAATTGTTCTCTGGAGATGACA...GTCTGCTCTTTTACACTGAAGAAAAGTCTGTAAGGCAAATTGGAACACAACCAAGGAAAAG|ATGTTCCTCCTGCTGATCAAGAGAAGCTTTTTATCCAGA LLFYTEEKSVRQIGTQPRKr|cssc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17595 TECPR2::PPP2R5C ENSG00000196663.16::ENSG00000078304.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3063 TRUE 1159 TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102425291:+ chr14:102829278-102968814:+ chr14:102891628:+ PPP2R5C ENSG00000078304.20 protein_coding + + chr14:101761709-101927989:+ chr14:101856686:+ chr14:102228046-102394326:+ chr14:102323023:+ chr14:102427019,chr14:102427020 chr14:101817568,chr14:101817566 NA NA chr14:102893356,chr14:102893357 chr14:102283905,chr14:102283903 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(97%) WD40(100%)|B56(44%) 1 0 0 72 1063 ENST00000359520.12 ENST00000694906.1 downstream upstream mismatches(1) CCATCTTCCATTGTGCAGCTGGATTATAGCCAGAAAGTGCTGCTGGTCTCTACTCTGCAAAGAAGTCTGCTCTTTTACACTGAAGAAAAGTCTGTAAGGCA...CAGGACTCTGTAAGCAAAGTGATCTAACCTTGTATGCGTCACGGCCCGGGCTCCGGCTATGGAAGGCTGATGTCCACGGGcCTGTTCAAGCCACcTTTATC...CTCCTAGACACAGTCAACCAG|ATGTTCCTCCTGCTGATCAAGAGAAGCTTTTTATCCAGAAGTTACGTCAGTGTTGCGTCCTCTTTGACTTTGTTTCTGAT LLDTVNQ|mflllikrsflsrsyvsvassltlfl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17616 SLC46A3::SACS ENSG00000139508.15::ENSG00000151835.17 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC46A3 ENSG00000139508.15 protein_coding - - chr13:28700064-28718970:- chr13:28717810:- chr13:29274201-29293107:- chr13:29291947:- SACS ENSG00000151835.17 protein_coding - - chr13:23288689-23433763:- chr13:23365277:- chr13:23862828-24007902:- chr13:23939416:- chr13:28715938 chr13:23368497 NA NA chr13:29290075 chr13:23942636 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Major_Facilitator_Superfamily(13%)|HEPN_domain(100%) MFS_1(1%)|HEPN(100%),Sarcoglycan_1(100%) 2 0 0 266 77 ENST00000266943.11 ENST00000683210.1 upstream downstream duplicates(1) CCGGGCGCGCACGAGCGCAGGGCATCCGAGGCGACAGCCCCTGGCACGGCCCGACCTGTACCCAGCCTGGCAGGAAGACTGTAATCGTGGG___AATACAGCTA...TGACAACGCAATATGTTTATCGGAGAATATGGGAAGAAACTGGCAACTACACTTTTTCATCTGATAGCAATATTTCTGAGTGTGAAAAAAAacAAAGCAGCCCAATTTTTGCATTCCAGGAG|GAATTAATTCAGAATGCAGAAGATGCTGGGGCGACAGAAGTTAAATTTTTATATGATGAAACTCAATACGGAAC TTQYVYRRIWEETGNYTFSSDSNISECEKkqSSPIFAFQE|ELIQNAEDAGATEVKFLYDETQYG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17618 CACNA1D::ITIH3 ENSG00000157388.20::ENSG00000162267.14 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNA1D ENSG00000157388.20 protein_coding + + chr3:53328963-53813733:+ chr3:53511487:+ chr3:53362990-53847760:+ chr3:53545514:+ ITIH3 ENSG00000162267.14 protein_coding + + chr3:52794768-52808799:+ chr3:52796739:+ chr3:52828784-52842815:+ chr3:52830755:+ chr3:53512221,chr3:53512221 chr3:52796647,chr3:52796660 NA NA chr3:53546248,chr3:53546248 chr3:52830663,chr3:52830676 NA NA sense sense unknown intron CDS/splice-site duplication medium none Ion_transport_protein(3%)|Inter-alpha-trypsin_inhibitor_heavy_chain_C-terminus(100%),Vault_protein_inter-alpha-trypsin_domain(56%),von_Willebrand_factor_type_A_domain(100%) DCP1(100%),Ion_trans(3%)|ITI_HC_C(100%),VIT(65%),VWA(100%),VWA_2(100%),VWA_3(100%) 1 1 0 4 5 ENST00000637424.1 ENST00000449956.3 downstream upstream duplicates(3) GGAATGGAA___ACCATTTGACATATTTATATTATTGGCTATTTTTGCCAATTGTGTGGCCcTAGCTATTTACATCCCATTCCCTGAAGATGATTCTAATTCAA...GGAAGCACATCCAAGGAGGAATCTCCAGCGCAGGTCCTTGTGTAAG|GACCATCGACGGTGTTACCTACCCTGGGAATGTCAAGGAGAAGGAAGTTGCCAAGAAGC...TCGAGCTAACCTACGAGGAGCTGCTGAAGAGGCACAAGGGCAAGTACGAGATGTACCTCAAGGTCCAGCCTAAGCAACTGGTCAAACACTTTGAG___ATCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE calcium channel, voltage-dependent, L type, alpha 1D subunit 1 Yes adrenal aldosterone producing adenoma epithelial oncogene missense FALSE NA NA NA NA NA NA NA NA NA 17621 LINC01004::KMT2E ENSG00000228393.6::ENSG00000005483.23 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC01004 ENSG00000228393.6 lncRNA - - chr7:104950315-105013068:- chr7:104983352:- chr7:104590762-104653515:- chr7:104623799:- KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:104980365:+ chr7:104581390-104755466:+ chr7:104620812:+ NA NA NA NA NA NA NA NA sense sense unknown exon intron inversion low none |PHD-finger(100%),SET_domain(100%) |PHD(100%),SET(100%) 0 2 4 58 3 ENST00000687367.1 unknown upstream upstream none GCAATAATGGCCCTGCTATAGGACTGGCTTTTATTTGAATTCCAACTCTTCTGCCACCTTAACCAGCTGTATCCAGATTTTAAAAGTTAATCTATCCGAGCCTCTTATTAAATATTAGGTTGATGAGATGATGCATGCAAAGCGCTTAGAACAGTACTAGGCATAAAGCGTCCGACATAAAGGTTAAGTAAAAGTAAGGAAAAGCTA...CTTTGCCCAATGACGTATTAGTCGTATTAAATATGG|AAGATTCCAGGGACTCAGGGTGAGAAGCACCCAATGCTTTCCTCAAGCAACTGGGTTCTTGGAGAGCCCAAGAAGTACTGGTATTAAGTACCAAAGTCTATGTCTGTCAGTGCAGGAAAAGAACTATAGATGGTCATGTAGACTATGTGGAGAGAAGGTATCTCTTGGAATGTGTCTGAGGAAGTAAATTTTAGCTGTATAGCCTATGCAATGCTGAAAATGGGTGAGAATGGATGACGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17622 UQCC5::PHF7 ENSG00000168273.8::ENSG00000010318.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UQCC5 ENSG00000168273.8 protein_coding + + chr3:52534013-52579237:+ chr3:52548561:+ chr3:52568029-52613253:+ chr3:52582577:+ PHF7 ENSG00000010318.22 protein_coding + + chr3:52410660-52423641:+ chr3:52416476:+ chr3:52444676-52457657:+ chr3:52450492:+ NA NA NA NA NA NA NA NA sense sense unknown intron intron duplication low none Uncharacterised_protein_family_UPF0640(96%)|PHD-like_zinc-binding_domain(94%) UPF0640(27%)|zf-HC5HC2H(70%),zf-HC5HC2H_2(66%) 0 0 6 2 25 unknown unknown downstream upstream duplicates(2) ATTTTAAGTTGGCAAAATTTCCCTCAGTTCTAAGGTCTGACGAACTTATTAAAACACAAAACATTGAATATTTATTAAATATTATGAATTTTAACTGCAGA...CTGTCGCCCTCGCTGGAGTGCAGTGGCGCGgTCTCgGCTCACTGCAACCTCTACCTCCTGGGTTCgAGCGATTCTCCTGCCTCAGGCTCCAGAGTAGCTGG...|...GCC?GGCCCGGCCCACATATTTTCGTTTGTTAAGTATCTGTACAAATATTTTTACCCATTTAAAAACACTGAGTGGTGGTCGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17633 ENSG00000203279::PTCSC2 ENSG00000203279.6::ENSG00000236130.2 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000203279 ENSG00000203279.6 lncRNA - - chr9:97200475-97238766:- chr9:97238423:- chr9:99962757-100001048:- chr9:100000705:- PTCSC2 ENSG00000236130.2 lncRNA - - chr9:97699625-97853080:- chr9:97722934:- chr9:100461907-100615362:- chr9:100485216:- chr9:97231253,chr9:97231255 chr9:97803084,chr9:97803084 NA NA chr9:99993535,chr9:99993537 chr9:100565366,chr9:100565366 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 1 84 3 ENST00000607322.1 ENST00000649461.1 upstream downstream none CTTCAGCAGGACCCACTAGCCAAGGAAAGGGGATAAAATAAATAGCAAAGGGAAGGAAAAACACGCACCTCTGGGATGCTGCAGGTCCTGTTGCAGCCGCCGCCATCCCTCGAAGCCAC...TGCTACTAGCGCGCTTATCAGCTCCGCCACCGCCCAAGGGGGAAACTTCTGCAGAAACCCCAACCGAGCTTCCGTC|GTATGAGAGAACAGAAATAGAGATT...CTCCACACAATGAAAATGGCCTTGTTCCTTAAG___ATTATTTTGAGATACTCTGCAAAATTCTGTAGTCACACGCAAAAGATTAGTCACCTTGAACAAGTAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17644 RPS6KA3::ENSG00000283400 ENSG00000177189.14::ENSG00000283400.1 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPS6KA3 ENSG00000177189.14 protein_coding - - chrX:20149911-20267519:- chrX:20204022:- chrX:20168029-20285637:- chrX:20222140:- ENSG00000283400 ENSG00000283400.1 lncRNA + - chrX:20443326-20492349:+ chrX:20453487:- chrX:20461444-20510467:+ chrX:20471605:- chrX:20195209,chrX:20195216 chrX:20463353,chrX:20463358 NA NA chrX:20213327,chrX:20213334 chrX:20481471,chrX:20481476 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Protein_kinase_domain(7%)| PK_Tyr_Ser-Thr(8%),Pkinase(9%)| 41 46 41 3008 118 ENST00000379565.9 unknown upstream downstream duplicates(5),low_entropy(1),mismappers(1),mismatches(8) CACAAACT___GAAGAAGTCAGTATCAAAGAAATTGCAATCACACATCATGTAAAGGAAGGACATGAAAAGGCAGATCCTTCCCAGTTTGAACTTTTAAAAGTATTAGGGCAGGGATCATTTGGAAAG___GTTTTCTTAGTTAAAAAAATCTCAGGCTCTGATGCTAGGCAGCTTTATGCCATGAAGGTATTGAAGAAGGCCACACTGAAAG|CTCATGCGCTTCATCACCATGCTATGAAGTTCAAGATGAAGATAGAATCATATTGTGACCGGAATTTTTCAGTGATGTGTTTCCCACAATCCTTCCTCATATGGATTTGTATCTAGAGAGAAAGCAACAAAAACCAAGACCTCAAAAAACTGAGGACCCAAAACCTTGTGGAAGGCCACAACTCTTGATCTTTT QTEEVSIKEIAITHHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLK|ahalhhhamkfkmkiesycdrnfsvmcfpqsfliwici* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase alpha-3 AGC RSK RSKp90 P51812 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17646 BDNF::ENSG00000255496 ENSG00000176697.20::ENSG00000255496.1 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BDNF ENSG00000176697.20 protein_coding - - chr11:27654893-27722058:- chr11:27700164:- chr11:27676440-27743605:- chr11:27721711:- ENSG00000255496 ENSG00000255496.1 lncRNA - - chr11:27696312-27877648:- chr11:27857916:- chr11:27717859-27899195:- chr11:27879463:- chr11:27660051,chr11:27660062 chr11:27859795,chr11:27859798 NA NA chr11:27681598,chr11:27681609 chr11:27881342,chr11:27881345 NA NA sense sense unknown 5'UTR/splice-site intron duplication high none none none 20 25 11 616 85 ENST00000418212.5 unknown upstream downstream duplicates(7),mismatches(4) GCCAGCCCGGTGCGCCCCTCCACCTCCTGCTCGGGGGGCTTTAATGAGACACCCACCGCTGCTGTGGGGCCGGCGGGGAGCAGCACCGCGACGGGGACCGGGGCTGGGCGCTGGAGCCAGAATCGGAACCACGATGTGACTCCGCCGCCGGGGACCCGTGAGGTTTGTGTGGACCCCGAG|ATGTTGATGACCAGAATAACACCTGCTCCACCGAAGTCTCAGAGCAGCAGTGGGAATCACGTGACACAGTCATTCACTCAGCAAGTGTGTGTGGAGTGCCCATGACATGCCAGCCCCTCTTCCAGGAGCCAGAGATAGAGAATGGAGTTCCAA___GCAGCAGCTGAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17649 GNB1L::SEPTIN5 ENSG00000185838.14::ENSG00000184702.20 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1692 FALSE NA FALSE NA GNB1L ENSG00000185838.14 protein_coding - - chr22:19783223-19854939:- chr22:19806659:- chr22:19770746-19842462:- chr22:19794182:- SEPTIN5 ENSG00000184702.20 protein_coding + + chr22:19714503-19724224:+ chr22:19719602:+ chr22:19702026-19711747:+ chr22:19707125:+ chr22:19804159,chr22:19804165 chr22:19717947,chr22:19717941 NA NA chr22:19791682,chr22:19791688 chr22:19705470,chr22:19705464 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Septin(100%) DUF4939(100%)|LRRNT(100%),MMR_HSR1(100%),Septin(100%) 14 13 12 366 883 ENST00000329517.11 ENST00000455784.7 upstream upstream duplicates(2),low_entropy(1),mismatches(2) GACCTCGCGGAGGGCAGGAGCGCTGTCGTGGACTCCGTGTGCTTGGAGAGTGTGGGCTTCTGCCGGAGCAGCATCCTGGCCGGGGGCCAGCCACGCTGGACGCTTGCCGTGCCAGGGAGGGGCAGCGACGAG___GTTCAGATTCTGGAGATGCCCTCCAAGACGTCAGTGTGCGCCCTGAAGCCGAAGGCAGATGCCAAGCTGGGCATGCCCATGTGCCTGCGGCTGTGGCAG|GACATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACCAGGTGCACCGCAAGTCGGTGAAGAAAGGCTTTGACTTCACACTCATGGTGGCTG___GTGAGTCAGGCCTGGGGAAGTCCACACTGGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGAAGCTGCTCAGTGCTGAGG___AGCGCATCAGCCAGACGGTAGAGATTCTAAAACACACGGTGG DLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQ|DIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE septin 5 2 AML leukaemia_lymphoma fusion translocation 17651 GNB1L::ENSG00000284874 ENSG00000185838.14::ENSG00000284874.1 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNB1L ENSG00000185838.14 protein_coding - - chr22:19783223-19854939:- chr22:19806659:- chr22:19770746-19842462:- chr22:19794182:- ENSG00000284874 ENSG00000284874.1 protein_coding + + chr22:19717220-19724772:+ chr22:19719602:+ chr22:19704743-19712295:+ chr22:19707125:+ chr22:19804159,chr22:19804165 chr22:19717947,chr22:19717941 NA NA chr22:19791682,chr22:19791688 chr22:19705470,chr22:19705464 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none DUF4939(100%)|LRRCT(100%),LRRNT(100%),MMR_HSR1(100%),Septin(100%) 14 10 9 366 883 ENST00000329517.11 ENST00000455843.5 upstream upstream duplicates(2),mismatches(2) AGCTGTGCCTGTGGGACCTCGCGGAGGGCAGGAGCGCTGTCGTGGACTCCGTGTGCTTGGAGAGTGTGGGCTTCTGCCGGAGCAGCATCCTGGCCGGGGGCCAGCCACGCTGGACGCTTGCCGTGCCAGGGAGGGGCAGCGACGAG___GTTCAGATTCTGGAGATGCCCTCCAAGACGTCAGTGTGCGCCCTGAAGCCGAAGGCAGATGCCAAGCTGGGCATGCCCATGTGCCTGCGGCTGTGGCAG|GACATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACCAGGTGCACCGCAAGTCGGTGAAGAAAGGCTTTGACTTCACACTCATGGTGGCTG___GTGAGTCAGGCCTGGGGAAGTCCACACTGGTCCACAGCCTCTTCCTGACAGACTTGTACAAG LCLWDLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQ|DIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17654 ZZZ3::MIGA1 ENSG00000036549.13::ENSG00000180488.17 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZZZ3 ENSG00000036549.13 protein_coding - - chr1:77562416-77683419:- chr1:77682587:- chr1:78028101-78149104:- chr1:78148272:- MIGA1 ENSG00000180488.17 protein_coding + - chr1:77779624-77879540:+ chr1:77806416:- chr1:78245309-78345225:+ chr1:78272101:- chr1:77653098,chr1:77653167 chr1:77820823,chr1:77821113 NA NA chr1:78118783,chr1:78118852 chr1:78286508,chr1:78286798 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 1 17 8 44 107 ENST00000370801.8 unknown upstream downstream duplicates(3),mismappers(1),mismatches(2) AGCAGTTGTCCTGGATGGCGGAGCCTTGGGTTCCGGGGGCCTGGGACCTGCAACTCTTTCTACA|AGGTGACTCCATTTGGCTCTTCTGCTGGCATCTCAAACTAACTACAGACACTTTCGACATAACAACATCTGGGTCAACGACGGACCACATATACAACAGTCAACCCTACCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17657 MAP7D2::ENSG00000283400 ENSG00000184368.16::ENSG00000283400.1 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP7D2 ENSG00000184368.16 protein_coding - - chrX:20006713-20116907:- chrX:20063414:- chrX:20024831-20135025:- chrX:20081532:- ENSG00000283400 ENSG00000283400.1 lncRNA + - chrX:20443326-20492349:+ chrX:20449595:- chrX:20461444-20510467:+ chrX:20467713:- chrX:20058970,chrX:20058975 chrX:20450704,chrX:20450706 NA NA chrX:20077088,chrX:20077093 chrX:20468822,chrX:20468824 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 4 4 10 493 42 ENST00000379643.10 unknown upstream downstream none GCAGAGATTGGCCAAAGAAAGACGAGAAGAAAGAGAAAAATGTCTGG___CTGCTCGGGAGCAACAGATCCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAATGGAGGAGCGATGGCGAAAACTGGAAGAGCAGCGGCAGCGGGAGGACCAAAAGAGAGCTGCTGTGGAAGAGAAAAGGAAACAGAAGCTCCGGGAGGAGGAG|AACCCAGCTGAAGGAACAACTCCTGTCTAGTGGCAAAAGAAAAAGAGCAATTGTAGAACTATGCAATGTGTTTTAAAGGAGATACTCAGACATGGTATATGTCACATTTCCTTAGGCAAAGAAAGTCACATAGGCAAACCAGCCAACAACAAGACAGGGAGATATACTCATTCCATGGGGACGGCCTGCAAGTCAGATGGCAATGGGCAGGAGTATCAAATTCTCTCACAGGGAAAGCAGTGAATAATTGGGAACGACAATACCATCTGCAACTGAGGGA...TGAGGTGCAAATTTGACTGTTTGAGTAGAAGTAATTGGTAAGAGGTTGGATATATGAATCCAGAGTTCAGGAAAGAGGCCTGGAGGCAGATATCATTTGAC QRLAKERREEREKCLAAREQQILEKQKRARLQYEKQMEERWRKLEEQRQREDQKRAAVEEKRKQKLREEE|npaegttpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17659 SKP2::TTC23L ENSG00000145604.17::ENSG00000205838.15 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE FALSE TRUE 1695 FALSE NA FALSE NA SKP2 ENSG00000145604.17 protein_coding + + chr5:36151989-36196849:+ chr5:36177292:+ chr5:36152091-36196951:+ chr5:36177394:+ TTC23L ENSG00000205838.15 protein_coding + + chr5:34838833-34900511:+ chr5:34845487:+ chr5:34838938-34900616:+ chr5:34845592:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none F-box-like(100%)| F-box(100%),F-box-like(100%)| 5 3 3 681 43 ENST00000676559.1 ENST00000505624.6 downstream upstream none ATCTCTCTACTTTAGTTAGAAGATGCCCCAATCTTGTCCATCTAGACTTAAG___TGATAGTGTCATGCTAAAGAATGACTGCTTTCAGGAATTTTTCCAGCTCAACTACCTCCAACACCTATCACTCAGTCGGTGCTATGATATAATACCTGAAACTTTACT|GTCACAGCAAACCGAGATCCCAGCTCACCAGCAAACAGATGAGTTGTATCCCACTGGTGGGTGTGGAGAGAGTGAAGAGGAAACTAAAGCTAAAGAGAAGGAGAAGGCCATAGACTGTATGTCTCATCCCAAAGAGAAATTAGCCCAATCCCAGAAGAAAGTAGCTCAGCT LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLl|SQQTEIPAHQQTDELYPTGGCGESEEETKAKEKEKAIDCMSHPKEKLAQSQKKVAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17661 CCDC88A::PNPT1 ENSG00000115355.18::ENSG00000138035.15 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3066 TRUE 1160 CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55332566:- chr2:55514978-55647031:- chr2:55559702:- PNPT1 ENSG00000138035.15 protein_coding - - chr2:55634061-55693863:- chr2:55656371:- chr2:55861196-55920998:- chr2:55883506:- chr2:55329430 chr2:55659403 NA NA chr2:55556566 chr2:55886538 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none HOOK_domain(100%)|3'_exoribonuclease_family__domain_1(27%),KH_domain(100%),S1_RNA_binding_domain(100%) HOOK_N(100%)|KH_1(100%),RNase_PH(24%) 3 1 4 149 597 ENST00000263630.13 ENST00000447944.7 upstream downstream duplicates(2) GAAAGAACTAGAAAAAGAAAATAAGGAGCTTGTGAAAAGAGCAACTATTGATATAAAAACGTTGGTTACACTACGTGAG___GATTTGGTGAGTGAAAAGTTGAAGACCCAACAGATGAACAATGATCTCGAAAAATTAACTCATGAGCTTGAGAAGATAGGGTTAAATAAGGAGCGACTCTTACATGATGAACAAAGTACTGATGACAG|TTTCCTCCTTATGCAACTAATGAAATTGGCAAAGTCACTGGTTTAAATAGAAGAGAACTTGGGCATG___GTGCTCTTGCTGAGAAAGCTTTGTATCCTGTTATTCCCCGAGATTTTCCTTTCACCATAAGAGTTACATCTGAAGTCCTAGAGTCAAATG___GGTCATCTTCTATGGCATCTGCATGTGGCGGAAGTTTAGCATTAATGGATTCA KELEKENKELVKRATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDs|fllmqlmklakslv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17662 CCDC88A::PNPT1 ENSG00000115355.18::ENSG00000138035.15 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3066 TRUE 1160 CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55332566:- chr2:55514978-55647031:- chr2:55559702:- PNPT1 ENSG00000138035.15 protein_coding - - chr2:55634061-55693863:- chr2:55656220:- chr2:55861196-55920998:- chr2:55883355:- chr2:55329430 chr2:55659403 NA NA chr2:55556566 chr2:55886538 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none HOOK_domain(100%)|3'_exoribonuclease_family__domain_1(19%),KH_domain(100%),S1_RNA_binding_domain(100%) HOOK_N(100%)|KH_1(100%),RNase_PH(24%) 2 1 3 149 730 ENST00000263630.13 ENST00000447944.7 upstream downstream duplicates(1),low_entropy(1) CTCCGACAACAAGCAGAAATTAAAGATACCACATTAGAAGAAAATAATGTGAAGATTGGAAATTTGGAAAAAGAAAACAAAACCCTATCCAAAGAAATTGG...GGtGCTTGTGAAAAGAGCAACTATTGATATAAAAACGTTGGTTACACTACGTGAG___GATTTGGTGAGTGAAAAGTTGAAGACCCAACAGATGAACAATGATCTCGAAAAATTAACTCATGAGCTTGAGAAGATAGGGTTAAATAAGGAGCGACTCTTACATGATGAACAAAGTACTGATGACAG|GTGCTCTTGCTGAGAAAGCTTTGTATCCTGTTATTCCCCGAGATTTTCCTTTCACCATAAGAGTTACATCTGAAGTCCTAGAGTCAAATG___GGTCATCTTCTATGGCATCTGCATGTGGCGGAAGTTTAGCATTAATGGATTCAGG vLVKRATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDr|csc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17724 LRCH3::PAK2 ENSG00000186001.14::ENSG00000180370.10 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRCH3 ENSG00000186001.14 protein_coding + + chr3:197791226-197888436:+ chr3:197847460:+ chr3:197518097-197615307:+ chr3:197574331:+ PAK2 ENSG00000180370.10 protein_coding + + chr3:196739857-196832647:+ chr3:196810590:+ chr3:196466728-196559518:+ chr3:196537461:+ chr3:197847683 chr3:196808643 NA NA chr3:197574554 chr3:196535514 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Leucine_rich_repeat(100%)|Protein_kinase_domain(100%) LRR_6(100%),LRR_8(100%)|ABC1(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_fungal(100%) 0 2 2 90 599 ENST00000438796.6 ENST00000327134.7 downstream upstream none AGCCAGTAGCCATTAGGGAGTTTCAAAAAACAGAAGATATGAGAAGATAcTTACATCAAAACAG___GGTTCCAGCTGAGCCATCTTCCCTCCTGTCACTATCAGCAAGTCACAATCAG|GAACTATCGTGAGCATAGGTGACCCTAAGAAAAAATATACAAGATATGAAAAAATTGGACAAGGGTAAGTATTTGTGACTGTATTACGATAATATTCAGTATTCAGTATTTCCTGGCTTTATAGCATGATGTTTATTTTGCCTGCCGACATCAAGTACTTATATAGTATTCTGTGAGTGGTACCCTTGGGGGATTTGTGTAAATAAATAATGCAGTTATTTGTAGATGCTGT...TGGTACAGTTTTCACTGCTACTGACGTTGCACTGGGACAGGAG___GTTGCTATCAAACAAATTAATTTACAGAAACAGCCAAAGAAGGAACTGATCATTAAC PVAIREFQKTEDMRRYLHQNRVPAEPSSLLSLSASHNQ|els* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase PAK 2 STE STE20 PAKA Q13177 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17754 EDA::SLC31A1 ENSG00000158813.18::ENSG00000136868.11 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EDA ENSG00000158813.18 protein_coding + + chrX:69616067-70039472:+ chrX:69957132:+ chrX:68835911-69259322:+ chrX:69176982:+ SLC31A1 ENSG00000136868.11 protein_coding + + chr9:113221544-113264492:+ chr9:113256114:+ chr9:115983824-116026772:+ chr9:116018394:+ chrX:69997179 chr9:113223893 NA NA chrX:69217029 chr9:115986173 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site translocation low none |Ctr_copper_transporter_family(100%) |Ctr(100%) 0 2 0 2 988 ENST00000374553.6 ENST00000374212.5 downstream upstream none GCCATACTCTGAAGAAGAAAGTAGGCGTGTTCGCCGCAATAAAAGAAGCAAAAGCAATGAAGGAGCAGATG|AATCTTCTGCTGACTCTCAACTTTTCCTGGAAAAAATGGATCATTCCCACCATATGGGGATGAGCTATATGGACTCCAACAGTACCATG PYSEEESRRVRRNKRSKSNEGAD|essadsqlflekMDHSHHMGMSYMDSNST NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17764 RFC5::KSR2 ENSG00000111445.14::ENSG00000171435.15 SNU1 SRR8615933 SRR8670770 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RFC5 ENSG00000111445.14 protein_coding + + chr12:118013588-118033130:+ chr12:118020985:+ chr12:118451393-118470935:+ chr12:118458790:+ KSR2 ENSG00000171435.15 protein_coding - + chr12:117453012-117968990:- chr12:117898993:+ chr12:117890817-118406795:- chr12:118336798:+ chr12:118021161 chr12:117898241 NA NA chr12:118458966 chr12:118336046 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none ATPase_family_associated_with_various_cellular_activities_(AAA)(51%)| AAA(24%),AAA_24(25%),DNA_pol3_delta2(0%),Rad17(100%),RuvB_N(100%)| 4 4 4 870 20 ENST00000454402.7 unknown downstream upstream duplicates(1),mismatches(1) GTCAGGTCGCGGCTGGTCACTGTGCAGGCGCTTGGcTGACGCGACGATCTCAGCGGATCTGGTCACCTTCGTCTCCCCGCCATGGAGACCTCAGCACTCAAGCAGCAGGAGCAGCCCGCGGCGACCAAGATCAGGAACCTGCCCT...CGGCCACAGACCCTGAATGATCTCATTTCTCATCAGGACATTCTGAGTACCA___TTCAGAAGTTTATCAATGAAGACCGACTGCCACACTTGCTTCTCTACGG...GGGACAGGCAAGACATCTACCATCCTAGCCTGTGCGAAACAGCTATATAAAGACAAAGAATTTGGCTCCATGGTCTTGGAG___...GCTGAATGCTTCAGATGACCGAGGAATAGACATCATTCGAGGACCGATCCTGAGCTTTGCTAGCACAAGGACAATATTTAA|ACTGTTTATTTAAAGTCCCTCCCTCCATAGAATCTTGGCGCAGATGATCTCATTACATCTTCGGTAGGTACATCGTGGATATATCACTGATACTTAATATGTGAAAAATACCTAAAAATCTCTGCTTATCCCAAAGTCAAGCTTCCAGCAACTCCCGCCCCACTTTGGGATACAACCGTGAAATAAACTGTAGATAAAGGCCTATGACAAGTTAAACACGGTTGGGCACGGTGGCTCATGCTTGTAATCCTACTCTTTGTGGGGCTGAG LNASDDRGIDIIRGPILSFASTRTIFk|lfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17769 SORBS2::LINC01344 ENSG00000154556.20::ENSG00000228918.5 SNU1 SRR8615933 SRR8670770 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SORBS2 ENSG00000154556.20 protein_coding - - chr4:185585444-185956652:- chr4:185856782:- chr4:186506598-186877806:- chr4:186777936:- LINC01344 ENSG00000228918.5 lncRNA - - chr1:182096338-182329213:- chr1:182204105:- chr1:182065473-182298348:- chr1:182173240:- chr4:185818848,chr4:185818868,chr4:185818867,chr4:185818862,chr4:185818861,chr4:185818853 chr1:182209786,chr1:182209786,chr1:182209786,chr1:182209786,chr1:182209786,chr1:182209786 NA NA chr4:186740002,chr4:186740022,chr4:186740021,chr4:186740016,chr4:186740015,chr4:186740007 chr1:182178921,chr1:182178921,chr1:182178921,chr1:182178921,chr1:182178921,chr1:182178921 NA NA sense sense unknown intron exon/splice-site translocation high none none none 0 1 1 11 3 unknown ENST00000663078.1 upstream downstream low_entropy(1) CGCTCTCTCCTGCCACCTTGTGAGATGTGCCTTGCTTCTCCTTCATCTTCTATGATGATTCTAAGTTTCCTGAGGCCTCCCCAGCCAGGCAGAACT|GAATGAAGAAGCAGAGAgCATGCAAGGTGTTTCCA...GAGAAAAGAAGAAGTGTAGAGATGATGTACTTGCCTGAGGGATGGATTAAAAAGTCTTTGGTCTTCTCTGAACGGTACTACTGAATTTATCCTCATCACCGTCATCATTGTCATTGTCATCATCATCATGAAAACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17770 COPZ1::ENSG00000258344 ENSG00000111481.10::ENSG00000258344.1 SNU1 SRR8615933 SRR8670770 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA COPZ1 ENSG00000111481.10 protein_coding + + chr12:54301202-54351846:+ chr12:54342287:+ chr12:54694986-54745630:+ chr12:54736071:+ ENSG00000258344 ENSG00000258344.1 lncRNA + + chr12:54276631-54345083:+ chr12:54321241:+ chr12:54670415-54738867:+ chr12:54715025:+ chr12:54343241,chr12:54343237 chr12:54302697,chr12:54302690 NA NA chr12:54737025,chr12:54737021 chr12:54696481,chr12:54696474 NA NA sense sense out-of-frame CDS/splice-site intron duplication medium none Clathrin_adaptor_complex_small_chain(32%)| Clat_adaptor_s(67%)| 7 2 5 2642 18 ENST00000552848.5 unknown downstream upstream duplicates(5),mismatches(3) TGCGGGGCAAGATGGAGGCGCTGATTTTG___GAACCTTCCCTGTATACTGTCAAAGCCATCCTGATTCTGGACAATGATGGAGATCGACTTTTTGCCAAG___TACTATGACGACACCTACCCCAGTGTCAAGGAGCAAAAGGCCTTTGAGAAGAACATTTTCAACAAGACCCATCGGACTGACA|CACAATTACCCCAACAGGCTGGAGAGCTAAGAATCAAGCGATCTTCTGCAACAATATCTGACTTAAAATTTGTCAGTTACTACACAGAAAAAGGAGCCAACCATCCCCATGAACCAACCATACCACACTTTTTCCTCCTTATGGTCCTTGTAGAATATCTGGCACTGAGGTAGAGTCCTTGAGGTAGGACTGGGATGCAAGAGAG MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTD|tqlpqqagelrikrssatisdlkfvsyytekganhpheptiphffllmvlveylalr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-148b chr12:54337216-54337314:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17818 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1697 TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 163 117 280 698 564 ENST00000667305.1 ENST00000278379.9 downstream downstream duplicates(60),mismappers(3),mismatches(23),multimappers(6) AGAGATTTTGAGAAACACATTGAAGGATCTGTTAACACTTGATATACCCAATAAAAGCAGTGGTTGTGCCAGTGCTGATCTGTCTTGATGTGAATGTGAACAATGGGAACCTGAGCTGAGCAG___TTAATGCTAGGGTGACAGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTG___GTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGTGGTTATGTTAATAGCCTTCCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17819 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35322679:- chr11:35272752-35441610:- chr11:35344226:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 14 7 290 698 65 ENST00000667305.1 ENST00000644779.1 downstream downstream duplicates(30),low_entropy(4),mismappers(3),mismatches(15),multimappers(4) TTAATGCTAGGGTGACAGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|GGTGACCTAGTGTCTTCCAGTAGGGCAATCTCTGGACATCTTTATCTCCCCAGTACCTCTCCAGATCCTGAAGCCTGGGGCCAGGGAGGAGAGGTTAGATGTCAGCAGTGGAAGGACAG___TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17820 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128009718:+ chr8:128806772-129199347:+ chr8:129021964:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 15 12 193 1145 564 ENST00000667305.1 ENST00000278379.9 downstream downstream duplicates(17),mismappers(2),mismatches(11),multimappers(4) ACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG___...CAG___GCCAACAGAGATTTTGAGAAACACATTGAAGGATCTGTTAACACTTGATATACCCAATAAAAGCAGTGGTTGTGCCAGTGCTGATCTGTCTTGATGTGAATGTGAACAATGGGAACCTGAGCTGAGCAG|TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTG___GTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCCATCCACCCTGATGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17821 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 21 12 71 749 564 ENST00000667305.1 ENST00000278379.9 downstream downstream duplicates(13),mismappers(1),mismatches(4),multimappers(2) ACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___...CTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG___AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTG___GTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17822 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128032272:+ chr8:128806772-129199347:+ chr8:129044518:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 3 3 294 58 564 ENST00000656999.1 ENST00000278379.9 downstream downstream duplicates(26),low_entropy(1),mismappers(2),mismatches(18),multimappers(4) TGATCCTGAGAACAAGCCTTGGAGGCGGAATCATTTTGAAATCCCAGGAAACCGGGCCTTAAGAGACGGCTGAAGACCCGAGCAGTCATTCGGTGGAGTCTGTGAGGCCCAGAGCTGAGGAGGAGGACATGGGTGTAGAAACGGTCGCAGCCCACACTGCTGTGCCTACAGCTCTGGATCCTGACTGT|TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTG___GTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17823 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128038980:+ chr8:128806772-129199347:+ chr8:129051226:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 2 1 296 23 564 ENST00000667305.1 ENST00000278379.9 downstream downstream duplicates(25),mismappers(2),mismatches(20),multimappers(4) AGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG___ATGTCTGCAACCAAGTCATTATAACACAGAAGGGACCTTGCAGCCATTGTGTCTTTGTGCTCAG|TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCGCCTGTGTGACAAGCTGGGGAAGAATCTGCTGCTCACCCTGACGGTGTTTG___GTGTCATCCTGGGAGCAGTGTGTGGAGGGCTTCTTCGCTTGGCATCTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17824 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128032272:+ chr8:128806772-129199347:+ chr8:129044518:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35322679:- chr11:35272752-35441610:- chr11:35344226:- chr8:128043199,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 0 1 296 58 65 ENST00000656999.1 ENST00000644779.1 downstream downstream duplicates(26),mismappers(2),mismatches(19),multimappers(4) GATCCTGAGAACAAGCCTTGGAGGCGGAATCATTTTGAAATCCCAGGAAACCGGGCCTTAAGAGACGGCTGAAGACCCGAGCAGTCATTCGGTGGAGTCTGTGAGGCCCAGAGCTGAGGAGGAGGACATGGGTGTAGAAACGGTCGCAGCCCACACTGCTGTGCCTACAGCTCTGGATCCTGACTGT|GGTGACCTAGTGTCTTCCAGTAGGGCAATCTCTGGACATCTTTATCTCCCCAGTACCTCTCCAGATCCTGAAGCCTGGGGCCAGGGAGGAGAGGTTAGATGTCAGCAGTGGAAGGACAG___TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17825 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128038980:+ chr8:128806772-129199347:+ chr8:129051226:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35322679:- chr11:35272752-35441610:- chr11:35344226:- chr8:128043199,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 0 1 296 23 65 ENST00000667305.1 ENST00000644779.1 downstream downstream duplicates(24),mismappers(2),mismatches(21),multimappers(4) TGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG___ATGTCTGCAACCAAGTCATTATAACACAGAAGGGACCTTGCAGCCATTGTGTCTTTGTGCTCAG|GGTGACCTAGTGTCTTCCAGTAGGGCAATCTCTGGACATCTTTATCTCCCCAGTACCTCTCCAGATCCTGAAGCCTGGGGCCAGGGAGGAGAGGTTAGATGTCAGCAGTGGAAGGACAG___TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17826 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35322679:- chr11:35272752-35441610:- chr11:35344226:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(100%) |SDF(100%) 1 2 73 749 65 ENST00000667305.1 ENST00000644779.1 downstream downstream duplicates(7),mismappers(1),mismatches(2),multimappers(2) TGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___...CCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG___AATCCTGTTACACCTGGGATTTAGGCACTTTCAATCTGAAAAAATACATATCCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|GGTGACCTAGTGTCTTCCAGTAGGGCAATCTCTGGACATCTTTATCTCCCCAGTACCTCTCCAGATCCTGAAGCCTGGGGCCAGGGAGGAGAGGTTAGATGTCAG...TGGAAGGACAG___TGCCAACAATATGCCCAAGCAGGTGGAAGTGCGAATGCACGACAGTCATCTTGGCTCAGAGGAACCCAAGCACCGGCACCTGGGCCTGCG...CAGGCCTGGATGCTAAGGCTAGTGGCCGCTTGGGCACGAGAGCCATGGTGTATTACATGTCCACGACCATCATTGCTGCAGTACTGGGGaTCATTCTGGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17827 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3089 TRUE 1161 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35286951:- chr11:35272752-35441610:- chr11:35308498:- chr8:127950984,chr8:127951022,chr8:127951061,chr8:127951115,chr8:127951191,chr8:128043199,chr8:127833660,chr8:127833684,chr8:127833653,chr8:127833660,chr8:127856467,chr8:127815932,chr8:127962046,chr8:127962232,chr8:127962088,chr8:127951055,chr8:127879520,chr8:127879484,chr8:127879503,chr8:127879505,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190,chr8:127833609,chr8:127833504,chr8:127833611 chr11:35311307,chr11:35311357,chr11:35311372,chr11:35311358,chr11:35311378,chr11:35336473,chr11:35291416,chr11:35291427,chr11:35291543,chr11:35291543,chr11:35296421,chr11:35299294,chr11:35311227,chr11:35311923,chr11:35311224,chr11:35311271,chr11:35315658,chr11:35315693,chr11:35315743,chr11:35315778,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478,chr11:35291468,chr11:35291467,chr11:35291468 NA NA chr8:128963230,chr8:128963268,chr8:128963307,chr8:128963361,chr8:128963437,chr8:129055445,chr8:128845906,chr8:128845930,chr8:128845899,chr8:128845906,chr8:128868713,chr8:128828178,chr8:128974292,chr8:128974478,chr8:128974334,chr8:128963301,chr8:128891766,chr8:128891730,chr8:128891749,chr8:128891751,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436,chr8:128845855,chr8:128845750,chr8:128845857 chr11:35332854,chr11:35332904,chr11:35332919,chr11:35332905,chr11:35332925,chr11:35358020,chr11:35312963,chr11:35312974,chr11:35313090,chr11:35313090,chr11:35317968,chr11:35320841,chr11:35332774,chr11:35333470,chr11:35332771,chr11:35332818,chr11:35337205,chr11:35337240,chr11:35337290,chr11:35337325,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025,chr11:35313015,chr11:35313014,chr11:35313015 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Sodium:dicarboxylate_symporter_family(29%) |SDF(41%) 0 1 1 4484 1043 ENST00000651587.1 ENST00000278379.9 downstream downstream duplicates(1) GGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGG...CACGGCCAGATCTGCCCTCCA|TGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTC...TGAAGCGGTgGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAG___CCTCACAGCCACCCTGGCAAGCGTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17828 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1698 TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121496532:- chr10:123237846-123357972:- chr10:123256046:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120503818:+ chr10:122216739-122351577:+ chr10:122263330:+ chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121489276,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121491887,chr10:121491888,chr10:121481847,chr10:121482067,chr10:121481881,chr10:121481996,chr10:121481996,chr10:121482007,chr10:121489288,chr10:121489247,chr10:121489185 chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120482722,chr10:120479253,chr10:120479060,chr10:120479055,chr10:120478959,chr10:120479253,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479092,chr10:120479096,chr10:120479129,chr10:120482714,chr10:120482757,chr10:120482818 NA NA chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123248790,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123251401,chr10:123251402,chr10:123241361,chr10:123241581,chr10:123241395,chr10:123241510,chr10:123241510,chr10:123241521,chr10:123248802,chr10:123248761,chr10:123248699 chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122242234,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238471,chr10:122238765,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238604,chr10:122238608,chr10:122238641,chr10:122242226,chr10:122242269,chr10:122242330 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|PAP2_superfamily(100%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(21%),Pkinase(25%),ig(100%)|PAP2(100%) 30 29 114 13909 200 ENST00000613048.4 ENST00000398250.6 upstream upstream duplicates(22),mismatches(11) GTGGGAATTGACAAAGACAAGCCCAAGGAGGCGGTCACCGTGGCCGTGAAGATGTTGAAAG___ATGATGCCACAGAGAAAGACCTTTCTGATCTGGTGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCACACAGGATG___GGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCCCGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|TTTTACAGAGTTTTTGGATCCGTTCCAGAGAGTCATCCAGCCAGAAGAGATCTGGCTCTATAAAAATCCTTTGGTGCAATCAGATAACATACCTACCCGCCTCATGTTT___GCAATTTCTTTCCTCACACCCCTGGCTGTTATTTGTGTGGTGAAAATTATCCGGCGAACAGACAAGACTGAAATTAAGGAAGCCTTCTTAG___CGGTGTC VGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQK|fyrvfgsvpeshparrdlal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17829 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121496532:- chr10:123237846-123357972:- chr10:123256046:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120575131:+ chr10:122216739-122351577:+ chr10:122334643:+ chr10:121489156,chr10:121489151,chr10:121485401,chr10:121488119,chr10:121491394,chr10:121491702,chr10:121491903,chr10:121491903,chr10:121491903,chr10:121491903,chr10:121489176,chr10:121489162,chr10:121489297,chr10:121489296,chr10:121489283,chr10:121489298,chr10:121489243,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481394,chr10:121481395,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121486619,chr10:121488325,chr10:121486450,chr10:121486605,chr10:121486513,chr10:121488265,chr10:121486632,chr10:121486488,chr10:121486488,chr10:121491617,chr10:121486449,chr10:121486488,chr10:121481417,chr10:121481419,chr10:121481420,chr10:121481420,chr10:121481422,chr10:121481423,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121486461,chr10:121486523,chr10:121486528,chr10:121486582,chr10:121486588,chr10:121486620,chr10:121486620,chr10:121486637,chr10:121486639,chr10:121486644,chr10:121486644,chr10:121486658,chr10:121486673,chr10:121486871,chr10:121488259,chr10:121488259,chr10:121488277,chr10:121488285,chr10:121488312,chr10:121488313,chr10:121488316,chr10:121488316,chr10:121488316,chr10:121488321,chr10:121488321,chr10:121488340,chr10:121489207,chr10:121489276,chr10:121489313,chr10:121489327,chr10:121489332,chr10:121489340,chr10:121488480,chr10:121488560,chr10:121491730,chr10:121491746,chr10:121491781,chr10:121491884,chr10:121491887,chr10:121491887,chr10:121491888,chr10:121491889,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121493130,chr10:121491594,chr10:121491635,chr10:121491635,chr10:121491708,chr10:121491715,chr10:121491723,chr10:121481847,chr10:121482067,chr10:121486484,chr10:121481881,chr10:121481996,chr10:121486610,chr10:121491691,chr10:121481996,chr10:121491707,chr10:121491714,chr10:121482007,chr10:121486607,chr10:121489288,chr10:121489247,chr10:121489185 chr10:120529892,chr10:120529892,chr10:120556918,chr10:120560459,chr10:120560476,chr10:120560482,chr10:120560504,chr10:120560526,chr10:120560531,chr10:120560539,chr10:120563159,chr10:120563207,chr10:120563035,chr10:120563037,chr10:120563052,chr10:120563059,chr10:120563097,chr10:120565346,chr10:120565347,chr10:120565351,chr10:120565354,chr10:120565355,chr10:120565277,chr10:120565277,chr10:120565279,chr10:120565279,chr10:120565279,chr10:120565343,chr10:120565344,chr10:120565345,chr10:120566768,chr10:120566790,chr10:120566557,chr10:120566561,chr10:120566634,chr10:120569005,chr10:120569099,chr10:120569151,chr10:120569197,chr10:120570115,chr10:120573278,chr10:120574164,chr10:120565317,chr10:120565317,chr10:120565318,chr10:120565338,chr10:120565318,chr10:120565317,chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120566714,chr10:120479164,chr10:120569036,chr10:120479114,chr10:120479114,chr10:120566718,chr10:120569083,chr10:120566711,chr10:120566711,chr10:120566711,chr10:120479041,chr10:120569035,chr10:120479024,chr10:120504608,chr10:120566723,chr10:120479052,chr10:120568966,chr10:120568965,chr10:120560485,chr10:120478957,chr10:120560485,chr10:120568965,chr10:120478957,chr10:120566762,chr10:120569041,chr10:120566814,chr10:120562981,chr10:120482722,chr10:120563019,chr10:120563008,chr10:120563008,chr10:120563008,chr10:120482812,chr10:120482750,chr10:120479049,chr10:120479063,chr10:120479114,chr10:120560331,chr10:120560487,chr10:120478959,chr10:120479253,chr10:120560332,chr10:120479253,chr10:120479060,chr10:120479055,chr10:120479039,chr10:120479047,chr10:120560485,chr10:120478957,chr10:120479047,chr10:120479057,chr10:120479070,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479045,chr10:120479092,chr10:120479092,chr10:120479092,chr10:120479096,chr10:120479096,chr10:120479096,chr10:120479129,chr10:120479129,chr10:120482714,chr10:120482757,chr10:120482818 NA NA chr10:123248670,chr10:123248665,chr10:123244915,chr10:123247633,chr10:123250908,chr10:123251216,chr10:123251417,chr10:123251417,chr10:123251417,chr10:123251417,chr10:123248690,chr10:123248676,chr10:123248811,chr10:123248810,chr10:123248797,chr10:123248812,chr10:123248757,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240908,chr10:123240909,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123246133,chr10:123247839,chr10:123245964,chr10:123246119,chr10:123246027,chr10:123247779,chr10:123246146,chr10:123246002,chr10:123246002,chr10:123251131,chr10:123245963,chr10:123246002,chr10:123240931,chr10:123240933,chr10:123240934,chr10:123240934,chr10:123240936,chr10:123240937,chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123245975,chr10:123246037,chr10:123246042,chr10:123246096,chr10:123246102,chr10:123246134,chr10:123246134,chr10:123246151,chr10:123246153,chr10:123246158,chr10:123246158,chr10:123246172,chr10:123246187,chr10:123246385,chr10:123247773,chr10:123247773,chr10:123247791,chr10:123247799,chr10:123247826,chr10:123247827,chr10:123247830,chr10:123247830,chr10:123247830,chr10:123247835,chr10:123247835,chr10:123247854,chr10:123248721,chr10:123248790,chr10:123248827,chr10:123248841,chr10:123248846,chr10:123248854,chr10:123247994,chr10:123248074,chr10:123251244,chr10:123251260,chr10:123251295,chr10:123251398,chr10:123251401,chr10:123251401,chr10:123251402,chr10:123251403,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123252644,chr10:123251108,chr10:123251149,chr10:123251149,chr10:123251222,chr10:123251229,chr10:123251237,chr10:123241361,chr10:123241581,chr10:123245998,chr10:123241395,chr10:123241510,chr10:123246124,chr10:123251205,chr10:123241510,chr10:123251221,chr10:123251228,chr10:123241521,chr10:123246121,chr10:123248802,chr10:123248761,chr10:123248699 chr10:122289404,chr10:122289404,chr10:122316430,chr10:122319971,chr10:122319988,chr10:122319994,chr10:122320016,chr10:122320038,chr10:122320043,chr10:122320051,chr10:122322671,chr10:122322719,chr10:122322547,chr10:122322549,chr10:122322564,chr10:122322571,chr10:122322609,chr10:122324858,chr10:122324859,chr10:122324863,chr10:122324866,chr10:122324867,chr10:122324789,chr10:122324789,chr10:122324791,chr10:122324791,chr10:122324791,chr10:122324855,chr10:122324856,chr10:122324857,chr10:122326280,chr10:122326302,chr10:122326069,chr10:122326073,chr10:122326146,chr10:122328517,chr10:122328611,chr10:122328663,chr10:122328709,chr10:122329627,chr10:122332790,chr10:122333676,chr10:122324829,chr10:122324829,chr10:122324830,chr10:122324850,chr10:122324830,chr10:122324829,chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122326226,chr10:122238676,chr10:122328548,chr10:122238626,chr10:122238626,chr10:122326230,chr10:122328595,chr10:122326223,chr10:122326223,chr10:122326223,chr10:122238553,chr10:122328547,chr10:122238536,chr10:122264120,chr10:122326235,chr10:122238564,chr10:122328478,chr10:122328477,chr10:122319997,chr10:122238469,chr10:122319997,chr10:122328477,chr10:122238469,chr10:122326274,chr10:122328553,chr10:122326326,chr10:122322493,chr10:122242234,chr10:122322531,chr10:122322520,chr10:122322520,chr10:122322520,chr10:122242324,chr10:122242262,chr10:122238561,chr10:122238575,chr10:122238626,chr10:122319843,chr10:122319999,chr10:122238471,chr10:122238765,chr10:122319844,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238551,chr10:122238559,chr10:122319997,chr10:122238469,chr10:122238559,chr10:122238569,chr10:122238582,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238557,chr10:122238604,chr10:122238604,chr10:122238604,chr10:122238608,chr10:122238608,chr10:122238608,chr10:122238641,chr10:122238641,chr10:122242226,chr10:122242269,chr10:122242330 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)|PAP2_superfamily(54%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(21%),Pkinase(25%),ig(100%)|PAP2(18%) 0 1 16 13909 318 ENST00000613048.4 ENST00000398250.6 upstream upstream none GGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCACACAGGATG___GGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAcTAC...GTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAA|TTGCCTTTTCGGGCCTTGGCTTCACGACGTTCTACTTGGCGGGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAAGAGCTGGCGGCTCTGTGCTGCCATCCTGCCCTTGTACTGCGCCATGATGATTGCCCTGTCCCGCATGTGCGACTACAAGCATCACTGGCAAG___ATTCCTTTGTGGGTGGAGTCATCGGCCTCATTTTTGCATACATTTGCTACAG...GGTATGACCAGTGTCCTGGGAGGATGGACACTAAGCCCTGGGCACATCTGCCACCCTGACATCATAACACAATAGAAATGGTTTTCTGTAGTGTATTTTTC VPEEQMTFKDLVSCTYQLARGMEYLASQK|lpfralasrrstwrasctasprvggeraggsvlpscpctap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17830 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121483698:- chr10:123237846-123357972:- chr10:123243212:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120589303:+ chr10:122216739-122351577:+ chr10:122348815:+ chr10:121481417,chr10:121481419,chr10:121481420,chr10:121481420,chr10:121481422,chr10:121481423,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121482993,chr10:121483020,chr10:121481847,chr10:121482067,chr10:121481881,chr10:121481996,chr10:121481996,chr10:121482007,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481395,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121482094,chr10:121482965 chr10:120565317,chr10:120565317,chr10:120565318,chr10:120565338,chr10:120565318,chr10:120565317,chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120586312,chr10:120586312,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479092,chr10:120479096,chr10:120479129,chr10:120565346,chr10:120565347,chr10:120565351,chr10:120565354,chr10:120565355,chr10:120565277,chr10:120565277,chr10:120565279,chr10:120565279,chr10:120565343,chr10:120565344,chr10:120565345,chr10:120582553,chr10:120586338 NA NA chr10:123240931,chr10:123240933,chr10:123240934,chr10:123240934,chr10:123240936,chr10:123240937,chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123242507,chr10:123242534,chr10:123241361,chr10:123241581,chr10:123241395,chr10:123241510,chr10:123241510,chr10:123241521,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240909,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123241608,chr10:123242479 chr10:122324829,chr10:122324829,chr10:122324830,chr10:122324850,chr10:122324830,chr10:122324829,chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122345824,chr10:122345824,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238604,chr10:122238608,chr10:122238641,chr10:122324858,chr10:122324859,chr10:122324863,chr10:122324866,chr10:122324867,chr10:122324789,chr10:122324789,chr10:122324791,chr10:122324791,chr10:122324855,chr10:122324856,chr10:122324857,chr10:122342065,chr10:122345850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(99%)|PAP2_superfamily(14%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(82%),Pkinase(100%),ig(100%)|PAP2(0%) 0 1 8 21489 304 ENST00000613048.4 ENST00000398250.6 upstream upstream none CAACGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAACCAATGAG|ATTCCTTTGTGGGTGGAGTCATCGGCCTCATTTTTGCATACATTTGCTACAGACAGCACTATCCTCCTCTGGCCAACACAGCTTGCCATAAACCCTACGTTAGTCTGCGAGTCCCAGCCTCACTGAAGAAAGAGGAGAGGCCCACAGCTGACAGCGCACCCAGCTTGCCTCTGGAGGGGATCACCGAAGGCCCGGTATGACCAGTGTCCTGGGAGGATGGACACTAAGCCCTGGGCACATCTGCCACCCTGACATCATAACACAATAGAAATGGTTTTCTGTAGTGTATTTTTCATCAG TFKQLVEDLDRILTLTTNE|iplwvessasflhtfatdstillwptqlainptlvcesqph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17831 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551290:- chr10:123237846-123357972:- chr10:123310804:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120503818:+ chr10:122216739-122351577:+ chr10:122263330:+ chr10:121519997,chr10:121520658,chr10:121520726,chr10:121520742,chr10:121519987,chr10:121520684,chr10:121520683,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121481847,chr10:121482067,chr10:121481881,chr10:121510846,chr10:121481996,chr10:121481996,chr10:121482007,chr10:121510853,chr10:121489288,chr10:121489247,chr10:121489185,chr10:121489276,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121491887,chr10:121491888,chr10:121510944,chr10:121510944 chr10:120463720,chr10:120498043,chr10:120463865,chr10:120463890,chr10:120463918,chr10:120463877,chr10:120463912,chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479045,chr10:120479092,chr10:120479096,chr10:120479129,chr10:120482704,chr10:120482714,chr10:120482757,chr10:120482818,chr10:120482722,chr10:120479253,chr10:120479060,chr10:120479055,chr10:120478959,chr10:120479253,chr10:120479102,chr10:120482788 NA NA chr10:123279511,chr10:123280172,chr10:123280240,chr10:123280256,chr10:123279501,chr10:123280198,chr10:123280197,chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123241361,chr10:123241581,chr10:123241395,chr10:123270360,chr10:123241510,chr10:123241510,chr10:123241521,chr10:123270367,chr10:123248802,chr10:123248761,chr10:123248699,chr10:123248790,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123251401,chr10:123251402,chr10:123270458,chr10:123270458 chr10:122223232,chr10:122257555,chr10:122223377,chr10:122223402,chr10:122223430,chr10:122223389,chr10:122223424,chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238557,chr10:122238604,chr10:122238608,chr10:122238641,chr10:122242216,chr10:122242226,chr10:122242269,chr10:122242330,chr10:122242234,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238471,chr10:122238765,chr10:122238614,chr10:122242300 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)|PAP2_superfamily(100%) I-set(1%),Ig_2(0%),Ig_3(1%),ig(0%)|PAP2(100%) 0 1 7 12899 200 ENST00000613048.4 ENST00000398250.6 upstream upstream none CCAACACAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGGGGAACCCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGcGGCTACAAG|TTTTACAGAGTTTTTGGATCCGTTCCAGAGAGTCATCCAGCCAGAAGAGATCTGGCTCTATAAAAAT...TGCAATCAGATAACATACCTACCCGCCTCATGTTT___GCAATTTCTTTCCTCACACCCCTGGCTGTTATTTGTGTGGTGAAAATTATCCGGCGAACAGACAAG NTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK|fyrvfgsvpeshparrdlal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17832 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121538592:- chr10:123237846-123357972:- chr10:123298106:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120589303:+ chr10:122216739-122351577:+ chr10:122348815:+ chr10:121508817,chr10:121509058,chr10:121509480,chr10:121509507,chr10:121509580,chr10:121509580,chr10:121509584,chr10:121509584,chr10:121509623,chr10:121509715,chr10:121509715,chr10:121509725,chr10:121509727,chr10:121509728,chr10:121509738,chr10:121509746,chr10:121509747,chr10:121509747,chr10:121510944,chr10:121510944,chr10:121510974,chr10:121511047,chr10:121510899,chr10:121510902,chr10:121512187,chr10:121512190,chr10:121512223,chr10:121512242,chr10:121512282,chr10:121512298,chr10:121512307,chr10:121512314,chr10:121511629,chr10:121511716,chr10:121511721,chr10:121511728,chr10:121511734,chr10:121511735,chr10:121511742,chr10:121511745,chr10:121511634,chr10:121511635,chr10:121511824,chr10:121511861,chr10:121511885,chr10:121511902,chr10:121511904,chr10:121511905,chr10:121511913,chr10:121511935,chr10:121511642,chr10:121511994,chr10:121511995,chr10:121512060,chr10:121512082,chr10:121512170,chr10:121513122,chr10:121513148,chr10:121513206,chr10:121512663,chr10:121520658,chr10:121520723,chr10:121520726,chr10:121520737,chr10:121520742,chr10:121519987,chr10:121519997,chr10:121520039,chr10:121524140,chr10:121524146,chr10:121524146,chr10:121524147,chr10:121524148,chr10:121481417,chr10:121481419,chr10:121481420,chr10:121481420,chr10:121481422,chr10:121481423,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121534330,chr10:121534342,chr10:121534420,chr10:121534232,chr10:121534260,chr10:121534306,chr10:121520684,chr10:121520683,chr10:121509488,chr10:121481847,chr10:121482067,chr10:121486484,chr10:121510846,chr10:121481881,chr10:121481996,chr10:121486610,chr10:121491691,chr10:121481996,chr10:121491707,chr10:121491714,chr10:121482007,chr10:121486607,chr10:121510853,chr10:121489288,chr10:121489247,chr10:121489185,chr10:121483463,chr10:121483470,chr10:121483483,chr10:121483487,chr10:121483516,chr10:121483544,chr10:121483554,chr10:121483568,chr10:121482917,chr10:121482921,chr10:121482889,chr10:121482922,chr10:121482926,chr10:121482930,chr10:121482935,chr10:121482951,chr10:121482959,chr10:121482993,chr10:121483006,chr10:121483020,chr10:121483022,chr10:121482898,chr10:121483065,chr10:121483071,chr10:121483083,chr10:121483169,chr10:121483188,chr10:121483211,chr10:121483233,chr10:121483238,chr10:121483264,chr10:121483273,chr10:121483301,chr10:121483331,chr10:121483333,chr10:121483391,chr10:121486461,chr10:121486523,chr10:121486528,chr10:121486582,chr10:121486588,chr10:121486620,chr10:121486620,chr10:121486637,chr10:121486639,chr10:121486644,chr10:121486644,chr10:121486658,chr10:121486673,chr10:121486871,chr10:121488259,chr10:121488259,chr10:121488277,chr10:121488285,chr10:121488312,chr10:121488313,chr10:121488316,chr10:121488316,chr10:121488316,chr10:121488321,chr10:121488321,chr10:121488340,chr10:121489156,chr10:121489151,chr10:121485401,chr10:121488119,chr10:121491394,chr10:121491702,chr10:121491903,chr10:121513128,chr10:121491903,chr10:121513121,chr10:121491903,chr10:121513128,chr10:121491903,chr10:121489207,chr10:121489276,chr10:121489313,chr10:121489327,chr10:121489332,chr10:121489340,chr10:121488480,chr10:121488560,chr10:121509578,chr10:121509596,chr10:121509586,chr10:121509579,chr10:121509635,chr10:121489243,chr10:121489176,chr10:121489162,chr10:121489297,chr10:121489296,chr10:121489283,chr10:121489298,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481395,chr10:121481391,chr10:121481391,chr10:121481392,chr10:121481391,chr10:121486619,chr10:121488325,chr10:121486450,chr10:121486605,chr10:121486513,chr10:121486632,chr10:121509591,chr10:121510848,chr10:121486488,chr10:121509586,chr10:121509581,chr10:121509581,chr10:121486488,chr10:121510832,chr10:121488265,chr10:121491617,chr10:121524103,chr10:121524115,chr10:121486449,chr10:121486488,chr10:121529205,chr10:121529277,chr10:121482094,chr10:121483407,chr10:121497038,chr10:121482965,chr10:121534362,chr10:121534290,chr10:121534264,chr10:121534289,chr10:121534290,chr10:121534265,chr10:121534196,chr10:121520757,chr10:121534203,chr10:121534195,chr10:121491730,chr10:121491746,chr10:121491781,chr10:121491884,chr10:121491887,chr10:121491887,chr10:121491888,chr10:121491889,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121493130,chr10:121491594,chr10:121491635,chr10:121491635,chr10:121491708,chr10:121491715,chr10:121491723,chr10:121496680,chr10:121496684,chr10:121496830,chr10:121496831,chr10:121496834,chr10:121496842,chr10:121496846,chr10:121496850,chr10:121496858,chr10:121496890,chr10:121496898,chr10:121496899,chr10:121496930,chr10:121496944,chr10:121496949,chr10:121496960,chr10:121496966,chr10:121497016,chr10:121497032,chr10:121497181,chr10:121497189,chr10:121497220,chr10:121497229,chr10:121497230,chr10:121497231,chr10:121497288,chr10:121497327,chr10:121497414,chr10:121497421,chr10:121497430,chr10:121497460,chr10:121497468,chr10:121497489,chr10:121497490,chr10:121497510,chr10:121496328,chr10:121497524,chr10:121497545,chr10:121496182,chr10:121497568,chr10:121497582,chr10:121496330,chr10:121496335,chr10:121496341,chr10:121496342,chr10:121496348,chr10:121496349,chr10:121496350,chr10:121496413,chr10:121496444,chr10:121496452,chr10:121496224,chr10:121496494,chr10:121496507,chr10:121496546,chr10:121496573,chr10:121496593,chr10:121496613,chr10:121496633,chr10:121496636,chr10:121496656,chr10:121496660 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NA NA chr10:123268331,chr10:123268572,chr10:123268994,chr10:123269021,chr10:123269094,chr10:123269094,chr10:123269098,chr10:123269098,chr10:123269137,chr10:123269229,chr10:123269229,chr10:123269239,chr10:123269241,chr10:123269242,chr10:123269252,chr10:123269260,chr10:123269261,chr10:123269261,chr10:123270458,chr10:123270458,chr10:123270488,chr10:123270561,chr10:123270413,chr10:123270416,chr10:123271701,chr10:123271704,chr10:123271737,chr10:123271756,chr10:123271796,chr10:123271812,chr10:123271821,chr10:123271828,chr10:123271143,chr10:123271230,chr10:123271235,chr10:123271242,chr10:123271248,chr10:123271249,chr10:123271256,chr10:123271259,chr10:123271148,chr10:123271149,chr10:123271338,chr10:123271375,chr10:123271399,chr10:123271416,chr10:123271418,chr10:123271419,chr10:123271427,chr10:123271449,chr10:123271156,chr10:123271508,chr10:123271509,chr10:123271574,chr10:123271596,chr10:123271684,chr10:123272636,chr10:123272662,chr10:123272720,chr10:123272177,chr10:123280172,chr10:123280237,chr10:123280240,chr10:123280251,chr10:123280256,chr10:123279501,chr10:123279511,chr10:123279553,chr10:123283654,chr10:123283660,chr10:123283660,chr10:123283661,chr10:123283662,chr10:123240931,chr10:123240933,chr10:123240934,chr10:123240934,chr10:123240936,chr10:123240937,chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123293844,chr10:123293856,chr10:123293934,chr10:123293746,chr10:123293774,chr10:123293820,chr10:123280198,chr10:123280197,chr10:123269002,chr10:123241361,chr10:123241581,chr10:123245998,chr10:123270360,chr10:123241395,chr10:123241510,chr10:123246124,chr10:123251205,chr10:123241510,chr10:123251221,chr10:123251228,chr10:123241521,chr10:123246121,chr10:123270367,chr10:123248802,chr10:123248761,chr10:123248699,chr10:123242977,chr10:123242984,chr10:123242997,chr10:123243001,chr10:123243030,chr10:123243058,chr10:123243068,chr10:123243082,chr10:123242431,chr10:123242435,chr10:123242403,chr10:123242436,chr10:123242440,chr10:123242444,chr10:123242449,chr10:123242465,chr10:123242473,chr10:123242507,chr10:123242520,chr10:123242534,chr10:123242536,chr10:123242412,chr10:123242579,chr10:123242585,chr10:123242597,chr10:123242683,chr10:123242702,chr10:123242725,chr10:123242747,chr10:123242752,chr10:123242778,chr10:123242787,chr10:123242815,chr10:123242845,chr10:123242847,chr10:123242905,chr10:123245975,chr10:123246037,chr10:123246042,chr10:123246096,chr10:123246102,chr10:123246134,chr10:123246134,chr10:123246151,chr10:123246153,chr10:123246158,chr10:123246158,chr10:123246172,chr10:123246187,chr10:123246385,chr10:123247773,chr10:123247773,chr10:123247791,chr10:123247799,chr10:123247826,chr10:123247827,chr10:123247830,chr10:123247830,chr10:123247830,chr10:123247835,chr10:123247835,chr10:123247854,chr10:123248670,chr10:123248665,chr10:123244915,chr10:123247633,chr10:123250908,chr10:123251216,chr10:123251417,chr10:123272642,chr10:123251417,chr10:123272635,chr10:123251417,chr10:123272642,chr10:123251417,chr10:123248721,chr10:123248790,chr10:123248827,chr10:123248841,chr10:123248846,chr10:123248854,chr10:123247994,chr10:123248074,chr10:123269092,chr10:123269110,chr10:123269100,chr10:123269093,chr10:123269149,chr10:123248757,chr10:123248690,chr10:123248676,chr10:123248811,chr10:123248810,chr10:123248797,chr10:123248812,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240909,chr10:123240905,chr10:123240905,chr10:123240906,chr10:123240905,chr10:123246133,chr10:123247839,chr10:123245964,chr10:123246119,chr10:123246027,chr10:123246146,chr10:123269105,chr10:123270362,chr10:123246002,chr10:123269100,chr10:123269095,chr10:123269095,chr10:123246002,chr10:123270346,chr10:123247779,chr10:123251131,chr10:123283617,chr10:123283629,chr10:123245963,chr10:123246002,chr10:123288719,chr10:123288791,chr10:123241608,chr10:123242921,chr10:123256552,chr10:123242479,chr10:123293876,chr10:123293804,chr10:123293778,chr10:123293803,chr10:123293804,chr10:123293779,chr10:123293710,chr10:123280271,chr10:123293717,chr10:123293709,chr10:123251244,chr10:123251260,chr10:123251295,chr10:123251398,chr10:123251401,chr10:123251401,chr10:123251402,chr10:123251403,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123252644,chr10:123251108,chr10:123251149,chr10:123251149,chr10:123251222,chr10:123251229,chr10:123251237,chr10:123256194,chr10:123256198,chr10:123256344,chr10:123256345,chr10:123256348,chr10:123256356,chr10:123256360,chr10:123256364,chr10:123256372,chr10:123256404,chr10:123256412,chr10:123256413,chr10:123256444,chr10:123256458,chr10:123256463,chr10:123256474,chr10:123256480,chr10:123256530,chr10:123256546,chr10:123256695,chr10:123256703,chr10:123256734,chr10:123256743,chr10:123256744,chr10:123256745,chr10:123256802,chr10:123256841,chr10:123256928,chr10:123256935,chr10:123256944,chr10:123256974,chr10:123256982,chr10:123257003,chr10:123257004,chr10:12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chr10:122328524,chr10:122328631,chr10:122320418,chr10:122320268,chr10:122238524,chr10:122328538,chr10:122328536,chr10:122238526,chr10:122238568,chr10:122238523,chr10:122328537,chr10:122328527,chr10:122328525,chr10:122328524,chr10:122328524,chr10:122328524,chr10:122328524,chr10:122328505,chr10:122238614,chr10:122242300,chr10:122328597,chr10:122328530,chr10:122328539,chr10:122328535,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122320020,chr10:122320011,chr10:122319997,chr10:122320020,chr10:122257555,chr10:122348332,chr10:122223377,chr10:122348347,chr10:122223402,chr10:122223430,chr10:122223232,chr10:122348429,chr10:122330611,chr10:122330611,chr10:122330609,chr10:122330607,chr10:122330607,chr10:122324829,chr10:122324829,chr10:122324830,chr10:122324850,chr10:122324830,chr10:122324829,chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122348345,chr10:122348340,chr10:122348391,chr10:122348433,chr10:122348433,chr10:122348314,chr10:122223389,chr10:122223424,chr10:122238719,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238557,chr10:122238557,chr10:122238604,chr10:122238604,chr10:122238604,chr10:122238608,chr10:122238608,chr10:122238608,chr10:122238641,chr10:122238641,chr10:122242216,chr10:122242226,chr10:122242269,chr10:122242330,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122345824,chr10:122346601,chr10:122345824,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122326226,chr10:122238676,chr10:122328548,chr10:122238626,chr10:122238626,chr10:122326230,chr10:122328595,chr10:122326223,chr10:122326223,chr10:122238553,chr10:122326223,chr10:122328547,chr10:122238536,chr10:122264120,chr10:122238564,chr10:122326235,chr10:122328478,chr10:122328477,chr10:122319997,chr10:122238469,chr10:122238469,chr10:122319997,chr10:122328477,chr10:122326274,chr10:122328553,chr10:122326326,chr10:122289404,chr10:122289404,chr10:122316430,chr10:122319971,chr10:122319988,chr10:122319994,chr10:122320016,chr10:122320038,chr10:122320038,chr10:122320043,chr10:122320043,chr10:122320051,chr10:122320051,chr10:122322493,chr10:122242234,chr10:122322531,chr10:122322520,chr10:122322520,chr10:122322520,chr10:122242324,chr10:122242262,chr10:122320716,chr10:122320173,chr10:122320183,chr10:122320190,chr10:122320137,chr10:122322609,chr10:122322671,chr10:122322719,chr10:122322547,chr10:122322549,chr10:122322564,chr10:122322571,chr10:122324858,chr10:122324859,chr10:122324863,chr10:122324866,chr10:122324867,chr10:122324789,chr10:122324789,chr10:122324791,chr10:122324791,chr10:122324855,chr10:122324856,chr10:122324857,chr10:122326280,chr10:122326302,chr10:122326069,chr10:122326073,chr10:122326146,chr10:122328611,chr10:122328662,chr10:122328663,chr10:122328663,chr10:122328667,chr10:122328680,chr10:122328681,chr10:122328709,chr10:122328070,chr10:122328517,chr10:122329627,chr10:122330641,chr10:122330641,chr10:122332790,chr10:122333676,chr10:122338086,chr10:122338601,chr10:122342065,chr10:122346087,chr10:122345772,chr10:122345850,chr10:122348083,chr10:122348119,chr10:122348276,chr10:122348343,chr10:122348393,chr10:122348410,chr10:122348462,chr10:122348473,chr10:122348473,chr10:122348488,chr10:122238561,chr10:122238575,chr10:122238626,chr10:122319843,chr10:122238471,chr10:122319999,chr10:122238765,chr10:122319844,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238551,chr10:122238559,chr10:122238469,chr10:122319997,chr10:122238559,chr10:122238569,chr10:122238582,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122345649,chr10:122346703,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122345641,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Immunoglobulin_I-set_domain(35%),Immunoglobulin_domain(100%)|PAP2_superfamily(14%) I-set(70%),Ig_2(100%),Ig_3(85%),ig(90%)|PAP2(0%) 1 1 6 15742 304 ENST00000613048.4 ENST00000398250.6 upstream upstream none CACCATACTGGACCAACACAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGGGGAACCCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG___GTACGAAACCAGCACTGGAGCCTCATTATGGAAAGTGTGGTCCCATCTGACAAGGGAAATTATACCTGTGTgGTGGAGAATGAATACGGGTCCATCAATCACACGTACCACCTGGATGTTGTGG|ATTCCTTTGTGGGTGGAGTCATCGGCCTCATTTTTGCATACATTTGCTACAGACAGCACTATCCTCCTCTGGCCAACACAGCTTGCCATAAACCCTACGTTAGTCTGCGAGTCCCAGCCTCACTGAAGAAAGAGGAGAGGCCCACAGCTGACAGCGCACCCAGCTTGCCTCTGGAGGGGATCACCGAAGGCCCGGTATGACCAGTGTCCTGGGAGGATGGACACTAAGCCCTGGGCACATCTGCCACCCTGACATCATAACACAATAGAAATGGTTTTCTGTAGTGTATTTTTCATCAG PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV|dSFVGGVIGLIFAYICYRQHYPPLANTACHKPYVSLRVPASLKKEERPTADSAPSLPLEGITEGPV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17833 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120503818:+ chr10:122216739-122351577:+ chr10:122263330:+ chr10:121519997,chr10:121520658,chr10:121520726,chr10:121520742,chr10:121519987,chr10:121553108,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121557378,chr10:121560536,chr10:121560554,chr10:121560571,chr10:121560642,chr10:121563159,chr10:121563215,chr10:121563215,chr10:121563226,chr10:121563382,chr10:121563391,chr10:121562962,chr10:121562962,chr10:121563003,chr10:121563044,chr10:121563135,chr10:121575582,chr10:121575707,chr10:121575715,chr10:121575721,chr10:121575890,chr10:121575891,chr10:121576056,chr10:121576080,chr10:121575572,chr10:121560477,chr10:121560617,chr10:121560617,chr10:121560620,chr10:121560543,chr10:121560517,chr10:121575662,chr10:121575939,chr10:121520684,chr10:121575644,chr10:121520683,chr10:121563268,chr10:121575750,chr10:121562970,chr10:121481847,chr10:121482067,chr10:121481881,chr10:121510846,chr10:121481996,chr10:121481996,chr10:121482007,chr10:121489276,chr10:121510853,chr10:121489288,chr10:121489247,chr10:121489185,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121491887,chr10:121491888,chr10:121510944,chr10:121510944 chr10:120463720,chr10:120498043,chr10:120463865,chr10:120463890,chr10:120463918,chr10:120458604,chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120487320,chr10:120463130,chr10:120463078,chr10:120463093,chr10:120463020,chr10:120469356,chr10:120469254,chr10:120469253,chr10:120469397,chr10:120469254,chr10:120469406,chr10:120469396,chr10:120469401,chr10:120469489,chr10:120469421,chr10:120469293,chr10:120469397,chr10:120469397,chr10:120469397,chr10:120469397,chr10:120469405,chr10:120469410,chr10:120469382,chr10:120469378,chr10:120469231,chr10:120463023,chr10:120463039,chr10:120463040,chr10:120463040,chr10:120463079,chr10:120463147,chr10:120463235,chr10:120463291,chr10:120463877,chr10:120463910,chr10:120463912,chr10:120469487,chr10:120469487,chr10:120469512,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479045,chr10:120479092,chr10:120479096,chr10:120479129,chr10:120482722,chr10:120482704,chr10:120482714,chr10:120482757,chr10:120482818,chr10:120479253,chr10:120479060,chr10:120479055,chr10:120478959,chr10:120479253,chr10:120479102,chr10:120482788 NA NA chr10:123279511,chr10:123280172,chr10:123280240,chr10:123280256,chr10:123279501,chr10:123312622,chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123316892,chr10:123320050,chr10:123320068,chr10:123320085,chr10:123320156,chr10:123322673,chr10:123322729,chr10:123322729,chr10:123322740,chr10:123322896,chr10:123322905,chr10:123322476,chr10:123322476,chr10:123322517,chr10:123322558,chr10:123322649,chr10:123335096,chr10:123335221,chr10:123335229,chr10:123335235,chr10:123335404,chr10:123335405,chr10:123335570,chr10:123335594,chr10:123335086,chr10:123319991,chr10:123320131,chr10:123320131,chr10:123320134,chr10:123320057,chr10:123320031,chr10:123335176,chr10:123335453,chr10:123280198,chr10:123335158,chr10:123280197,chr10:123322782,chr10:123335264,chr10:123322484,chr10:123241361,chr10:123241581,chr10:123241395,chr10:123270360,chr10:123241510,chr10:123241510,chr10:123241521,chr10:123248790,chr10:123270367,chr10:123248802,chr10:123248761,chr10:123248699,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123251401,chr10:123251402,chr10:123270458,chr10:123270458 chr10:122223232,chr10:122257555,chr10:122223377,chr10:122223402,chr10:122223430,chr10:122218116,chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122246832,chr10:122222642,chr10:122222590,chr10:122222605,chr10:122222532,chr10:122228868,chr10:122228766,chr10:122228765,chr10:122228909,chr10:122228766,chr10:122228918,chr10:122228908,chr10:122228913,chr10:122229001,chr10:122228933,chr10:122228805,chr10:122228909,chr10:122228909,chr10:122228909,chr10:122228909,chr10:122228917,chr10:122228922,chr10:122228894,chr10:122228890,chr10:122228743,chr10:122222535,chr10:122222551,chr10:122222552,chr10:122222552,chr10:122222591,chr10:122222659,chr10:122222747,chr10:122222803,chr10:122223389,chr10:122223422,chr10:122223424,chr10:122228999,chr10:122228999,chr10:122229024,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238557,chr10:122238604,chr10:122238608,chr10:122238641,chr10:122242234,chr10:122242216,chr10:122242226,chr10:122242269,chr10:122242330,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238471,chr10:122238765,chr10:122238614,chr10:122242300 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |PAP2_superfamily(100%) |PAP2(100%) 1 0 2 24238 200 ENST00000613048.4 ENST00000398250.6 upstream upstream none GCAGCAGCAGCGGCAGCGCCTCGGTTCCTGAGCCCACCGCAGGCTGAAGGCATTGCGCGTAGTCCATGCCCGTAGAGGAAGTGTGCAGATGGGATTAACGTCCACATGGAGATATGGAAGAGGACCGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|TTTTACAGAGTTTTTGGATCCGTTCC MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|vlqsfwir NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17834 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3090 TRUE 1162 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121564502:- chr10:123237846-123357972:- chr10:123324016:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120589303:+ chr10:122216739-122351577:+ chr10:122348815:+ chr10:121529205,chr10:121529277,chr10:121482094,chr10:121483407,chr10:121534093,chr10:121534362,chr10:121482986,chr10:121534290,chr10:121482962,chr10:121534264,chr10:121496963,chr10:121496954,chr10:121482961,chr10:121534289,chr10:121483002,chr10:121496908,chr10:121482999,chr10:121482986,chr10:121482986,chr10:121534290,chr10:121482975,chr10:121482963,chr10:121534265,chr10:121496963,chr10:121496978,chr10:121482961,chr10:121496963,chr10:121482961,chr10:121496963,chr10:121496968,chr10:121482961,chr10:121482961,chr10:121482929,chr10:121534196,chr10:121497027,chr10:121520757,chr10:121534203,chr10:121497013,chr10:121534195,chr10:121497013,chr10:121497038,chr10:121520646,chr10:121534093,chr10:121482965,chr10:121508817,chr10:121509058,chr10:121509480,chr10:121509507,chr10:121509580,chr10:121509580,chr10:121509584,chr10:121509584,chr10:121509623,chr10:121509715,chr10:121509715,chr10:121509725,chr10:121509727,chr10:121509728,chr10:121509738,chr10:121509746,chr10:121509747,chr10:121510944,chr10:121510944,chr10:121510974,chr10:121511047,chr10:121510899,chr10:121510902,chr10:121512187,chr10:121512190,chr10:121512223,chr10:121512242,chr10:121512282,chr10:121512298,chr10:121512307,chr10:121512314,chr10:121511629,chr10:121511716,chr10:121511721,chr10:121511728,chr10:121511734,chr10:121511735,chr10:121511736,chr10:121511742,chr10:121511745,chr10:121511634,chr10:121511635,chr10:121511824,chr10:121511861,chr10:121511885,chr10:121511902,chr10:121511904,chr10:121511905,chr10:121511913,chr10:121511935,chr10:121511936,chr10:121511642,chr10:121511994,chr10:121511995,chr10:121512060,chr10:121512082,chr10:121512170,chr10:121513122,chr10:121513148,chr10:121513206,chr10:121512663,chr10:121520186,chr10:121520190,chr10:121519705,chr10:121520242,chr10:121520252,chr10:121520253,chr10:121520263,chr10:121520264,chr10:121520276,chr10:121520278,chr10:121520287,chr10:121520328,chr10:121519715,chr10:121520345,chr10:121520355,chr10:121520416,chr10:121520417,chr10:121519656,chr10:121520421,chr10:121519726,chr10:121520430,chr10:121520431,chr10:121520470,chr10:121520483,chr10:121520497,chr10:121520498,chr10:121520502,chr10:121520529,chr10:121520545,chr10:121520549,chr10:121520592,chr10:121520624,chr10:121520630,chr10:121520631,chr10:121520642,chr10:121520657,chr10:121520658,chr10:121519756,chr10:121520663,chr10:121519756,chr10:121520687,chr10:121520692,chr10:121520723,chr10:121520726,chr10:121520728,chr10:121520733,chr10:121520736,chr10:121520737,chr10:121520737,chr10:121520742,chr10:121520759,chr10:121520761,chr10:121520767,chr10:121520772,chr10:121519663,chr10:121520781,chr10:121520789,chr10:121520801,chr10:121520804,chr10:121520814,chr10:121519818,chr10:121519841,chr10:121519844,chr10:121519846,chr10:121519678,chr10:121519911,chr10:121519684,chr10:121519928,chr10:121519934,chr10:121519954,chr10:121519987,chr10:121519997,chr10:121520006,chr10:121520007,chr10:121519689,chr10:121520039,chr10:121520052,chr10:121520083,chr10:121520086,chr10:121520091,chr10:121520097,chr10:121520098,chr10:121520104,chr10:121520105,chr10:121520116,chr10:121520119,chr10:121520120,chr10:121520145,chr10:121520160,chr10:121520168,chr10:121519694,chr10:121520177,chr10:121520178,chr10:121524140,chr10:121524146,chr10:121524146,chr10:121524147,chr10:121524148,chr10:121528174,chr10:121481417,chr10:121481419,chr10:121481420,chr10:121481420,chr10:121481422,chr10:121481423,chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121534309,chr10:121534330,chr10:121534340,chr10:121534342,chr10:121534344,chr10:121534353,chr10:121534354,chr10:121533787,chr10:121534378,chr10:121534384,chr10:121534400,chr10:121533795,chr10:121534420,chr10:121533823,chr10:121533838,chr10:121533849,chr10:121533877,chr10:121533879,chr10:121533881,chr10:121533884,chr10:121533907,chr10:121533921,chr10:121533970,chr10:121533973,chr10:121534124,chr10:121534142,chr10:121534143,chr10:121534192,chr10:121534214,chr10:121534224,chr10:121534257,chr10:121534260,chr10:121534269,chr10:121534290,chr10:121537006,chr10:121543419,chr10:121544266,chr10:121544308,chr10:121544329,chr10:121544329,chr10:121544331,chr10:121544337,chr10:121544354,chr10:121544354,chr10:121544366,chr10:121544398,chr10:121544443,chr10:121547131,chr10:121547131,chr10:121552253,chr10:121552736,chr10:121552760,chr10:121552761,chr10:121552783,chr10:121552812,chr10:121552826,chr10:121552827,chr10:121552867,chr10:121552917,chr10:121552921,chr10:121552975,chr10:121553010,chr10:121553013,chr10:121553021,chr10:121553023,chr10:121553028,chr10:121552280,chr10:121553049,chr10:121553052,chr10:121553108,chr10:121553117,chr10:121553129,chr10:121553130,chr10:121553134,chr10:121553138,chr10:121553144,chr10:121553154,chr10:121553165,chr10:121553170,chr10:121553173,chr10:121553179,chr10:121553180,chr10:121553204,chr10:121553276,chr10:121553278,chr10:121553297,chr10:121553306,chr10:121553322,chr10:121553339,chr10:121553386,chr10:12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NA NA 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chr10:122318078,chr10:122319971,chr10:122319988,chr10:122319994,chr10:122320016,chr10:122320038,chr10:122320038,chr10:122320043,chr10:122320043,chr10:122320051,chr10:122320051,chr10:122320716,chr10:122320173,chr10:122320183,chr10:122320190,chr10:122320137,chr10:122322547,chr10:122322549,chr10:122322551,chr10:122322564,chr10:122322571,chr10:122322596,chr10:122322609,chr10:122322609,chr10:122322621,chr10:122322622,chr10:122322671,chr10:122322676,chr10:122322692,chr10:122322719,chr10:122322097,chr10:122324858,chr10:122324859,chr10:122324863,chr10:122324866,chr10:122324867,chr10:122324789,chr10:122324789,chr10:122324791,chr10:122324791,chr10:122324855,chr10:122324856,chr10:122324857,chr10:122326280,chr10:122326302,chr10:122326069,chr10:122326073,chr10:122326146,chr10:122327239,chr10:122327249,chr10:122327291,chr10:122327291,chr10:122327291,chr10:122328070,chr10:122326334,chr10:122328517,chr10:122328611,chr10:122328662,chr10:122328663,chr10:122328663,chr10:122328667,chr10:122328680,chr10:122328681,chr10:122328709,chr10:122329627,chr10:122330641,chr10:122330641,chr10:122332790,chr10:122333642,chr10:122333676,chr10:122333680,chr10:122333713,chr10:122333724,chr10:122333739,chr10:122346601,chr10:122346601,chr10:122348403,chr10:122346601,chr10:122346601,chr10:122345649,chr10:122346703,chr10:122346601,chr10:122348390,chr10:122346601,chr10:122348390,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122348440,chr10:122348440,chr10:122348440,chr10:122348440,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122345641,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601,chr10:122346601 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Immunoglobulin_domain(100%)|PAP2_superfamily(14%) I-set(0%),Ig_3(1%)|PAP2(0%) 1 0 2 19990 304 ENST00000358487.10 ENST00000398250.6 upstream upstream none CCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA|ATTCCTTTGTGGGTGGAGTCATCGGCCTCATTTTTGCATACATTTGC...CCTACGTTAGTCTGCGAGTCCCAGCCTCACTGAAGAAAGAGGAGAGGCCCACAGCTGACAGCGCACCCAGCTTGCCTCTGGAGGGGATCACCGAAGGCCCGGTATGACCAGTGTCCTGGGAGGATGGACACTAA GLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNK|nSFVGGVIGLIFAYI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17838 PVT1::FER1L6-AS2 ENSG00000249859.14::ENSG00000253868.4 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3091 TRUE 1163 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ FER1L6-AS2 ENSG00000253868.4 lncRNA - - chr8:124044395-124171522:- chr8:124060792:- chr8:125056636-125183763:- chr8:125073033:- chr8:127893539,chr8:128022886,chr8:128022886,chr8:128022886 chr8:124105994,chr8:124139363,chr8:124139333,chr8:124139364 NA NA chr8:128905785,chr8:129035132,chr8:129035132,chr8:129035132 chr8:125118235,chr8:125151604,chr8:125151574,chr8:125151605 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 10 5 33 4484 32 ENST00000667305.1 ENST00000669903.1 downstream downstream duplicates(6),mismappers(2),mismatches(7) GCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTAGTGGACATCTGAAACCCTAAAACATCTCATCTGTGCAAAAAAGAGGAATGAGCCAGGTCGGGAGAGTGAGAAGCTCGCACCACTTCGAAAGCGTCTGCCTGGATGCTGAAGTTCGGGTTGTTCTTGTAGCTCTGGATCACGCAGGACTTCACACCTTGTCCTCCGCACTCAATGAGAGCCTGAGGCCGATCCACAGAGAGGAGCTGCACCTTCTTCATTTCCCGAACTCCCCAGAAGAGAACCTGAGGAAAAGACCAGCAGAGCCATCACCACAGATCCACGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17839 PVT1::FER1L6-AS2 ENSG00000249859.14::ENSG00000253868.4 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3091 TRUE 1163 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ FER1L6-AS2 ENSG00000253868.4 lncRNA - - chr8:124044395-124171522:- chr8:124060792:- chr8:125056636-125183763:- chr8:125073033:- chr8:127893539,chr8:128022886,chr8:128022886,chr8:128022886 chr8:124105994,chr8:124139363,chr8:124139333,chr8:124139364 NA NA chr8:128905785,chr8:129035132,chr8:129035132,chr8:129035132 chr8:125118235,chr8:125151604,chr8:125151574,chr8:125151605 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 1 36 889 32 ENST00000667305.1 ENST00000669903.1 downstream downstream duplicates(5),mismatches(3) CAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGgGACGACGAGCTGCGAGCAAAGATGTG...CAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CTAGTGGACATCTGAAACCCTAAAACATCTCATCTGTGCAAAAAAGAGGAATGAGCCAGGTCGGGAGAGTGAGAAGCTCGCACCACTTCGAAAGCGTCTGCCTGGATGCTGAAGTTCGGGTTGTTCTTGTAGCTCTGGATCACGCAGGACTTCACACCTTGTCCTCCGCACTCAATGAGAGCCTGAGGCCGATCCACAGAGAGGAGCTGCACCTTCTTCATTTCCCGAACTCCCCAGAAGAGAACCTGAGGAAAAGACCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17840 PVT1::FER1L6-AS2 ENSG00000249859.14::ENSG00000253868.4 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3091 TRUE 1163 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ FER1L6-AS2 ENSG00000253868.4 lncRNA - - chr8:124044395-124171522:- chr8:124047693:- chr8:125056636-125183763:- chr8:125059934:- chr8:127893539,chr8:128022886,chr8:128022886,chr8:128022886 chr8:124105994,chr8:124139363,chr8:124139333,chr8:124139364 NA NA chr8:128905785,chr8:129035132,chr8:129035132,chr8:129035132 chr8:125118235,chr8:125151604,chr8:125151574,chr8:125151605 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 4484 9 ENST00000651587.1 ENST00000669903.1 downstream downstream none CGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGTCAATAATGTCAGCTGAATTTCTCCATAAAGGGCTTGACTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17849 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3093 TRUE 1164 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr8:127956735,chr8:127955729,chr8:127956782,chr8:127955843,chr8:127956610,chr8:127956631,chr8:127955721 chr8:127286892,chr8:127287029,chr8:127286911,chr8:127286999,chr8:127286891,chr8:127286891,chr8:127241892 NA NA chr8:128968981,chr8:128967975,chr8:128969028,chr8:128968089,chr8:128968856,chr8:128968877,chr8:128967967 chr8:128299137,chr8:128299274,chr8:128299156,chr8:128299244,chr8:128299136,chr8:128299136,chr8:128254137 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 16 889 35 ENST00000667305.1 ENST00000642795.1 downstream upstream duplicates(1),mismatches(2) GGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATG...CATTATTTGAGATGAGTTACATCTTGGAG|AGAACTGAGGTCGCAAGACAACAAACTGGTCCTAAATAAAAAGTAAGAAAAATGCCGGGGAGGAGCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17850 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3093 TRUE 1164 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:127955721,chr8:127956735,chr8:127955729,chr8:127956782,chr8:127955843,chr8:127956610,chr8:127956631 chr8:127241892,chr8:127286892,chr8:127287029,chr8:127286911,chr8:127286999,chr8:127286891,chr8:127286891 NA NA chr8:128967967,chr8:128968981,chr8:128967975,chr8:128969028,chr8:128968089,chr8:128968856,chr8:128968877 chr8:128254137,chr8:128299137,chr8:128299274,chr8:128299156,chr8:128299244,chr8:128299136,chr8:128299136 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 19 4484 75 ENST00000651587.1 ENST00000642795.1 downstream upstream duplicates(2),mismatches(2) GGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAA...AGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGAGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17851 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3093 TRUE 1164 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127956735,chr8:127955729,chr8:127956782,chr8:127955843,chr8:127956610,chr8:127956631,chr8:127955721,chr8:127856378,chr8:127856384 chr8:127286892,chr8:127287029,chr8:127286911,chr8:127286999,chr8:127286891,chr8:127286891,chr8:127241892,chr8:127322074,chr8:127322076 NA NA chr8:128968981,chr8:128967975,chr8:128969028,chr8:128968089,chr8:128968856,chr8:128968877,chr8:128967967,chr8:128868624,chr8:128868630 chr8:128299137,chr8:128299274,chr8:128299156,chr8:128299244,chr8:128299136,chr8:128299136,chr8:128254137,chr8:128334319,chr8:128334321 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 16 4484 479 ENST00000651587.1 ENST00000645215.1 downstream upstream duplicates(1),mismatches(1) GGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGC...___ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCtGGC...CTGGACTCTTTGACTTCTCAAGGCTTAGACTCGTGCTTCCTGGAATGTCCTTCATTCCTCTCAGGCTGGTACATTCCAAGTCTCCCTTCAGCACACAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17852 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3093 TRUE 1164 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127414888:+ chr8:127568568-128431295:+ chr8:128427133:+ chr8:127956735,chr8:127955729,chr8:127956782,chr8:127955843,chr8:127956610,chr8:127956631,chr8:127970543,chr8:127955721,chr8:127856378,chr8:127856384,chr8:127977585,chr8:127803994,chr8:127970459,chr8:127970445,chr8:127970586 chr8:127286892,chr8:127287029,chr8:127286911,chr8:127286999,chr8:127286891,chr8:127286891,chr8:127393395,chr8:127241892,chr8:127322074,chr8:127322076,chr8:127358916,chr8:127359549,chr8:127393563,chr8:127393568,chr8:127393426 NA NA chr8:128968981,chr8:128967975,chr8:128969028,chr8:128968089,chr8:128968856,chr8:128968877,chr8:128982789,chr8:128967967,chr8:128868624,chr8:128868630,chr8:128989831,chr8:128816240,chr8:128982705,chr8:128982691,chr8:128982832 chr8:128299137,chr8:128299274,chr8:128299156,chr8:128299244,chr8:128299136,chr8:128299136,chr8:128405640,chr8:128254137,chr8:128334319,chr8:128334321,chr8:128371162,chr8:128371795,chr8:128405808,chr8:128405813,chr8:128405671 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 1 4484 602 ENST00000651587.1 ENST00000645215.1 downstream upstream mismatches(1) GGCCCGCGGGgCGGGCGGGCTCGGGGgGGCCGGGgCGAGGAGGGGCGACGcCGAGgTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCATTCTCTCTGGGTGA...GCAGCTTTATGGAAAAGCCCACATGGTGAGCAACTGAGGCCTCCTACCAACAGCCAACAAGAAACCGGGGCCTTTGCCAACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17853 MON2::LINC02458 ENSG00000061987.16::ENSG00000246363.4 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MON2 ENSG00000061987.16 protein_coding + + chr12:62466817-62600476:+ chr12:62556192:+ chr12:62860597-62994256:+ chr12:62949972:+ LINC02458 ENSG00000246363.4 lncRNA - + chr12:89010681-89309566:- chr12:89025171:+ chr12:89404458-89703343:- chr12:89418948:+ chr12:62560332,chr12:62560333 chr12:89022199,chr12:89022197 NA NA chr12:62954112,chr12:62954113 chr12:89415976,chr12:89415974 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none C-terminal_region_of_Mon2_protein(26%),Dimerisation_and_cyclophilin-binding_domain_of_Mon2(100%),Domain_of_unknown_function_(DUF1981)(100%),Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%)| DCB(100%),DUF1981(100%),Mon2_C(15%),Sec7_N(100%)| 5 10 17 128 28 ENST00000393630.8 unknown downstream upstream duplicates(6),mismappers(2),mismatches(4) GGAACTTTATTACAGCATTCAACCTGGCACACTGTTATCTGGAAG___GTACTCTTTCATCTACTGGACAGAGTTCGAGAGTCCTCTACCACTGCAGACAAAGAAAAGATTGAGTCTGGAGGTGGCAATATTCTCATTCATCATTCAAGGGACACCGCCGAGAAGCAATGGGCTGAGACGTGGGTATTAACATTGGCTGGAGTAGCAAGGATCTTCAACACTAGAAGATATTTGCTGCAGCCTTTAG|GATCTCACTGTGTCATCCAGATTGGAGTGCAGTGGTGTGATCACAGCTCACTGCAGCCTCGATCTCCCAAGCTCAAGTGATCCTCCCACCTCAGCCTCATAAGTAGCTGGGACTAAAGGCATGTGCCACCACACCCAGCTATTTTTTTTTAATTTCTTCAGAAAAACGAAGTCTCACTATATTGCCTAGGCTGGTCTCAAACTCCTGACTTCAAGAAATCCTCCTGCCTCAGGCTCCCAAAGTGCTAGGATTACAGGCATGAACCACCACTCCCAGCTATGTTTTAATTTTT GTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGGGNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPL|gshcviqigvqwcdhsslqprspklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17855 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127992244,chr8:128015367,chr8:128016260,chr8:127992368,chr8:128015612,chr8:128015714,chr8:128015647,chr8:127992168,chr8:127992214 chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052,chr8:127477915,chr8:127477912 NA NA chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:129004490,chr8:129027613,chr8:129028506,chr8:129004614,chr8:129027858,chr8:129027960,chr8:129027893,chr8:129004414,chr8:129004460 chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297,chr8:128490160,chr8:128490157 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 20 1454 21 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(5),mismatches(4) GTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGACG...TTTTATAGCTAGTGAGGCTGGCTGGAAGCAGGGTCGATCTGGTCTGATGTGTTGCAAGATGTGAACTTATTAAGGCATCACAGAGGCAACTCCCAGCGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17856 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr8:127992168,chr8:127992214,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127477915,chr8:127477912,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:129004414,chr8:129004460,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128490160,chr8:128490157,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 18 889 21 ENST00000662410.1 ENST00000501396.5 downstream downstream duplicates(4),mismatches(4) AAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGACG...CTTTCCAGAGCTGTGACCTGAACTGTcCCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17857 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127992168,chr8:127992214,chr8:127999761,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127895280,chr8:127970423,chr8:127895241,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647,chr8:127936839,chr8:127936879,chr8:127936573,chr8:127937141,chr8:127937225,chr8:127936574,chr8:127937303,chr8:127936667,chr8:127936678 chr8:127477915,chr8:127477912,chr8:127384390,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127330020,chr8:127393608,chr8:127329762,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343 NA NA chr8:129004414,chr8:129004460,chr8:129012007,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128907526,chr8:128982669,chr8:128907487,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893,chr8:128949085,chr8:128949125,chr8:128948819,chr8:128949387,chr8:128949471,chr8:128948820,chr8:128949549,chr8:128948913,chr8:128948924 chr8:128490160,chr8:128490157,chr8:128396635,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128342265,chr8:128405853,chr8:128342007,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 16 181 25 ENST00000661830.1 ENST00000501396.5 downstream downstream duplicates(4),mismatches(4) GGCCTTGGCTGTAAGGACCCCTAAGG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17858 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127895241,chr8:127936839,chr8:127936879,chr8:127936573,chr8:127937141,chr8:127937225,chr8:127936574,chr8:127937303,chr8:127936667,chr8:127936678,chr8:127992168,chr8:127992214,chr8:127999761,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127895280,chr8:127970423,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127329762,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127477915,chr8:127477912,chr8:127384390,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127330020,chr8:127393608,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:128907487,chr8:128949085,chr8:128949125,chr8:128948819,chr8:128949387,chr8:128949471,chr8:128948820,chr8:128949549,chr8:128948913,chr8:128948924,chr8:129004414,chr8:129004460,chr8:129012007,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128907526,chr8:128982669,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128342007,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128490160,chr8:128490157,chr8:128396635,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128342265,chr8:128405853,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 15 889 25 ENST00000662410.1 ENST00000501396.5 downstream downstream duplicates(4),mismatches(4) CTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17859 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127895241,chr8:127936839,chr8:127936879,chr8:127936573,chr8:127937141,chr8:127937225,chr8:127936574,chr8:127937303,chr8:127936667,chr8:127936678,chr8:127992168,chr8:127992214,chr8:127999761,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127884359,chr8:127895280,chr8:127970423,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127329762,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127477915,chr8:127477912,chr8:127384390,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127297050,chr8:127330020,chr8:127393608,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:128907487,chr8:128949085,chr8:128949125,chr8:128948819,chr8:128949387,chr8:128949471,chr8:128948820,chr8:128949549,chr8:128948913,chr8:128948924,chr8:129004414,chr8:129004460,chr8:129012007,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128896605,chr8:128907526,chr8:128982669,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128342007,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128490160,chr8:128490157,chr8:128396635,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128309295,chr8:128342265,chr8:128405853,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 1 11 889 41 ENST00000662410.1 ENST00000502082.5 downstream downstream duplicates(2),mismatches(4) GAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17860 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr8:127992168,chr8:127992214,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127477915,chr8:127477912,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:129004414,chr8:129004460,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128490160,chr8:128490157,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 0 18 4484 21 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(4),mismatches(4) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17861 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127895241,chr8:127936839,chr8:127936879,chr8:127936573,chr8:127937141,chr8:127937225,chr8:127936574,chr8:127937303,chr8:127936667,chr8:127936678,chr8:127992168,chr8:127992214,chr8:127999761,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127895280,chr8:127970423,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127329762,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127477915,chr8:127477912,chr8:127384390,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127330020,chr8:127393608,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:128907487,chr8:128949085,chr8:128949125,chr8:128948819,chr8:128949387,chr8:128949471,chr8:128948820,chr8:128949549,chr8:128948913,chr8:128948924,chr8:129004414,chr8:129004460,chr8:129012007,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128907526,chr8:128982669,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128342007,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128490160,chr8:128490157,chr8:128396635,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128342265,chr8:128405853,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 15 4484 25 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(3),mismatches(4) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17862 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3094 TRUE 1165 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127895241,chr8:127936839,chr8:127936879,chr8:127936573,chr8:127937141,chr8:127937225,chr8:127936574,chr8:127937303,chr8:127936667,chr8:127936678,chr8:127992168,chr8:127992214,chr8:127999761,chr8:128016286,chr8:128015770,chr8:128015769,chr8:128016124,chr8:127884359,chr8:127895280,chr8:127970423,chr8:127841860,chr8:127992244,chr8:128015367,chr8:127992368,chr8:128016260,chr8:128015612,chr8:128015714,chr8:128015647 chr8:127329762,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127420343,chr8:127477915,chr8:127477912,chr8:127384390,chr8:127477653,chr8:127477948,chr8:127478117,chr8:127477650,chr8:127297050,chr8:127330020,chr8:127393608,chr8:127446990,chr8:127477587,chr8:127477648,chr8:127477524,chr8:127477524,chr8:127477904,chr8:127478024,chr8:127478052 NA NA chr8:128907487,chr8:128949085,chr8:128949125,chr8:128948819,chr8:128949387,chr8:128949471,chr8:128948820,chr8:128949549,chr8:128948913,chr8:128948924,chr8:129004414,chr8:129004460,chr8:129012007,chr8:129028532,chr8:129028016,chr8:129028015,chr8:129028370,chr8:128896605,chr8:128907526,chr8:128982669,chr8:128854106,chr8:129004490,chr8:129027613,chr8:129004614,chr8:129028506,chr8:129027858,chr8:129027960,chr8:129027893 chr8:128342007,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128432588,chr8:128490160,chr8:128490157,chr8:128396635,chr8:128489898,chr8:128490193,chr8:128490362,chr8:128489895,chr8:128309295,chr8:128342265,chr8:128405853,chr8:128459235,chr8:128489832,chr8:128489893,chr8:128489769,chr8:128489769,chr8:128490149,chr8:128490269,chr8:128490297 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 11 4484 41 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(2),mismatches(4) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17865 CMIP::DYNLRB2-AS1 ENSG00000153815.18::ENSG00000259867.6 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CMIP ENSG00000153815.18 protein_coding + + chr16:81444808-81711762:+ chr16:81699801:+ chr16:81478413-81745367:+ chr16:81733406:+ DYNLRB2-AS1 ENSG00000259867.6 lncRNA - + chr16:80154979-80563354:- chr16:80528656:+ chr16:80188876-80597251:- chr16:80562553:+ chr16:81700067,chr16:81700068 chr16:80517428,chr16:80517426 NA NA chr16:81733672,chr16:81733673 chr16:80551325,chr16:80551323 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none none none 2 0 6 505 1 ENST00000537098.8 unknown downstream upstream duplicates(1) TGAGAAGTTCACCAA___GGAACTGAAGTACGTGATTCAGAGGTTCGCCGAAGACCCCAGGCAAGAG___...GTCCACTCATGCCTGCTGAGCGTGCGGGCCGGCAAAGATGGCTGGTTCCAGCTCTACAGCCCCGGAGGGGTGG?CTGCGA?GATGACGGGGAGCTGTTCGCCAGCATG___GTGCACATCCTCATGGGCTCCTGTTACAAGACCAAAAAATTCCTGCTCTCCCTGGCAGAAAACAAGCTGGGTCCCTGCATGCTCCTGGCACTGAGGGGGAACCAGACCATGGTGGAG|ATCCAAAGCGGTCAGAAGAAGTGATCAAGATTCAACAAGCTAAGCTGTCTCCTGATGGTCAAGGCATTCTCTTC...ATTCCAATTTCTGAGTCAGCTGCAAGAGAAGAAGTCAACCAAATAGATTTACAAAAGGGATCGGATCATGCTGGAATGTCTGGcGTGACATTACAAGGCAGCATCCTCCCTGGGAAG VHSCLLSVRAGKDGWFQLYSPGGV?C?DDGELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVE|iqsgqkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-7854,hsa-mir-6504 chr16:81533902-81533966:+,chr16:81611348-81611408:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17871 SPECC1::PRR5L ENSG00000128487.19::ENSG00000135362.14 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SPECC1 ENSG00000128487.19 protein_coding + + chr17:20008865-20319026:+ chr17:20156236:+ chr17:19912178-20222339:+ chr17:20059549:+ PRR5L ENSG00000135362.14 protein_coding + + chr11:36296288-36465204:+ chr11:36393846:+ chr11:36317838-36486754:+ chr11:36415396:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |HbrB-like(100%) |HbrB(100%) 1 0 3 9 328 ENST00000395530.6 ENST00000527172.5 downstream upstream none GCCGGACGCAACCGCCTCGCCAGCCGGAGCCAGCGCGAGCTCGGCACGGTGGACACCCGGTCCGAGGCCGGCAAGCCGGCTGGTGCCCGAGTCGGCCAAGCATGGGCAACCACTCAGGACGGCCCGAGGATCCGGAACCAG|AAGAGGCAATTCGGACATAAAGAGAAACATCAAGGGCATG...GTGACGGCATGGCTACAAGGCAGCCATCTGTAAACCAAGGAGAGAGACCCCAAAGGAAATCAACCCTGCTGACACCTTGATCGTGGACTTCTAGCCTCCAG MGNHSGRPEDPEP|eeairt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE sperm antigen with calponin homology and coiled-coil domains 1 2 JMML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 17873 SLC1A2::ATE1 ENSG00000110436.13::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35391540:- chr11:35272752-35441610:- chr11:35413087:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121790289:- chr10:123468907-123688316:- chr10:123549804:- chr11:35284915,chr11:35289836,chr11:35291389,chr11:35291457,chr11:35291457,chr11:35291464,chr11:35291492,chr11:35291496,chr11:35291505,chr11:35291543,chr11:35291543,chr11:35299067,chr11:35299140,chr11:35299172,chr11:35299172,chr11:35299200,chr11:35299222,chr11:35299230,chr11:35299232,chr11:35299271,chr11:35299304,chr11:35299306,chr11:35299313,chr11:35299325,chr11:35299333,chr11:35299335,chr11:35316917,chr11:35333282,chr11:35333289,chr11:35333290,chr11:35333246,chr11:35333674,chr11:35333679,chr11:35333679,chr11:35333730,chr11:35333265,chr11:35333851,chr11:35333851,chr11:35333272,chr11:35390954,chr11:35390858,chr11:35390729,chr11:35266702,chr11:35291484,chr11:35291328,chr11:35291426,chr11:35291328,chr11:35291328,chr11:35299126,chr11:35299161,chr11:35333846,chr11:35299155,chr11:35299280,chr11:35299124,chr11:35348691,chr11:35348694,chr11:35348694,chr11:35348692,chr11:35258661,chr11:35300745,chr11:35291430,chr11:35291437,chr11:35299145,chr11:35299251,chr11:35333830,chr11:35333830,chr11:35333831,chr11:35333829,chr11:35258604,chr11:35258608,chr11:35258605,chr11:35258597,chr11:35258606,chr11:35258820,chr11:35351757 chr10:121878478,chr10:121815418,chr10:121894801,chr10:121821738,chr10:121894757,chr10:121894736,chr10:121894838,chr10:121821679,chr10:121821680,chr10:121821647,chr10:121894666,chr10:121829571,chr10:121829678,chr10:121829533,chr10:121829544,chr10:121829571,chr10:121829593,chr10:121829602,chr10:121829602,chr10:121895539,chr10:121895570,chr10:121829511,chr10:121895590,chr10:121829408,chr10:121829408,chr10:121829408,chr10:121795075,chr10:121829552,chr10:121829566,chr10:121829551,chr10:121829543,chr10:121829740,chr10:121829555,chr10:121829564,chr10:121829398,chr10:121829547,chr10:121829725,chr10:121896840,chr10:121829552,chr10:121790673,chr10:121791110,chr10:121791188,chr10:121809779,chr10:121821655,chr10:121821667,chr10:121821663,chr10:121821774,chr10:121821795,chr10:121829495,chr10:121829530,chr10:121829530,chr10:121829523,chr10:121829364,chr10:121829733,chr10:121844180,chr10:121844201,chr10:121844180,chr10:121843703,chr10:121845475,chr10:121875551,chr10:121894704,chr10:121894711,chr10:121895496,chr10:121895822,chr10:121896830,chr10:121896829,chr10:121896829,chr10:121896828,chr10:121900617,chr10:121900617,chr10:121900617,chr10:121900617,chr10:121900617,chr10:121899434,chr10:121899434 NA NA chr11:35306462,chr11:35311383,chr11:35312936,chr11:35313004,chr11:35313004,chr11:35313011,chr11:35313039,chr11:35313043,chr11:35313052,chr11:35313090,chr11:35313090,chr11:35320614,chr11:35320687,chr11:35320719,chr11:35320719,chr11:35320747,chr11:35320769,chr11:35320777,chr11:35320779,chr11:35320818,chr11:35320851,chr11:35320853,chr11:35320860,chr11:35320872,chr11:35320880,chr11:35320882,chr11:35338464,chr11:35354829,chr11:35354836,chr11:35354837,chr11:35354793,chr11:35355221,chr11:35355226,chr11:35355226,chr11:35355277,chr11:35354812,chr11:35355398,chr11:35355398,chr11:35354819,chr11:35412501,chr11:35412405,chr11:35412276,chr11:35288249,chr11:35313031,chr11:35312875,chr11:35312973,chr11:35312875,chr11:35312875,chr11:35320673,chr11:35320708,chr11:35355393,chr11:35320702,chr11:35320827,chr11:35320671,chr11:35370238,chr11:35370241,chr11:35370241,chr11:35370239,chr11:35280208,chr11:35322292,chr11:35312977,chr11:35312984,chr11:35320692,chr11:35320798,chr11:35355377,chr11:35355377,chr11:35355378,chr11:35355376,chr11:35280151,chr11:35280155,chr11:35280152,chr11:35280144,chr11:35280153,chr11:35280367,chr11:35373304 chr10:123637993,chr10:123574933,chr10:123654316,chr10:123581253,chr10:123654272,chr10:123654251,chr10:123654353,chr10:123581194,chr10:123581195,chr10:123581162,chr10:123654181,chr10:123589086,chr10:123589193,chr10:123589048,chr10:123589059,chr10:123589086,chr10:123589108,chr10:123589117,chr10:123589117,chr10:123655054,chr10:123655085,chr10:123589026,chr10:123655105,chr10:123588923,chr10:123588923,chr10:123588923,chr10:123554590,chr10:123589067,chr10:123589081,chr10:123589066,chr10:123589058,chr10:123589255,chr10:123589070,chr10:123589079,chr10:123588913,chr10:123589062,chr10:123589240,chr10:123656355,chr10:123589067,chr10:123550188,chr10:123550625,chr10:123550703,chr10:123569294,chr10:123581170,chr10:123581182,chr10:123581178,chr10:123581289,chr10:123581310,chr10:123589010,chr10:123589045,chr10:123589045,chr10:123589038,chr10:123588879,chr10:123589248,chr10:123603695,chr10:123603716,chr10:123603695,chr10:123603218,chr10:123604990,chr10:123635066,chr10:123654219,chr10:123654226,chr10:123655011,chr10:123655337,chr10:123656345,chr10:123656344,chr10:123656344,chr10:123656343,chr10:123660132,chr10:123660132,chr10:123660132,chr10:123660132,chr10:123660132,chr10:123658949,chr10:123658949 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Arginine-tRNA-protein_transferase__C_terminus(5%) |ATE_C(0%) 0 3 1 7 125 ENST00000645966.1 ENST00000540606.7 upstream downstream none GGTCAGGTGGGCTGATTGGTTCTCCCTGCTACAGTGGTAGAATTCAGCGCTGTACCTAG|GGTCAGTATAGACCTTCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAACCAG...AAGTTCCTGTGTTGgGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17874 PVT1::ENSG00000289526 ENSG00000249859.14::ENSG00000289526.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3097 TRUE 1166 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35030265:- chr11:35035622-35088739:- chr11:35051812:- chr8:127949648,chr8:127949654,chr8:127949663,chr8:127949667,chr8:127949683,chr8:127949683,chr8:127949672,chr8:127949671,chr8:127949655,chr8:127949661,chr8:127949707,chr8:127949707,chr8:127949698,chr8:127949702,chr8:127949670,chr8:127949706,chr8:127949711,chr8:127949707,chr8:127949690,chr8:127949682,chr8:127949708,chr8:127949718,chr8:127949701,chr8:127949703 chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059052,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059076,chr11:35059052,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077 NA NA chr8:128961894,chr8:128961900,chr8:128961909,chr8:128961913,chr8:128961929,chr8:128961929,chr8:128961918,chr8:128961917,chr8:128961901,chr8:128961907,chr8:128961953,chr8:128961953,chr8:128961944,chr8:128961948,chr8:128961916,chr8:128961952,chr8:128961957,chr8:128961953,chr8:128961936,chr8:128961928,chr8:128961954,chr8:128961964,chr8:128961947,chr8:128961949 chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080599,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080623,chr11:35080599,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 0 1 3 357 9 ENST00000654105.1 ENST00000702237.1 downstream downstream duplicates(1),mismatches(1) GCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|AACACACCCTTCAAAGTGCTAATGCTGTTCCAGCTCAGCAGACAC...GAGCTTTGAACCCTGAACCCAGCATTCTGAGAGTGGGAACCAGAAATGTGCATTTGAAAAGACTCCCCAGGCAATTCTGATGAGGAGCCAGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17876 PVT1::ENSG00000289526 ENSG00000249859.14::ENSG00000289526.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3097 TRUE 1166 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35014618:- chr11:35035622-35088739:- chr11:35036165:- chr8:127949648,chr8:127949654,chr8:127949663,chr8:127949667,chr8:127949683,chr8:127949683,chr8:127949672,chr8:127949671,chr8:127949655,chr8:127949661,chr8:127949707,chr8:127949707,chr8:127949698,chr8:127949702,chr8:127949670,chr8:127949706,chr8:127949711,chr8:127949707,chr8:127949690,chr8:127949682,chr8:127949708,chr8:127949718,chr8:127949701,chr8:127949703 chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059052,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059076,chr11:35059052,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077 NA NA chr8:128961894,chr8:128961900,chr8:128961909,chr8:128961913,chr8:128961929,chr8:128961929,chr8:128961918,chr8:128961917,chr8:128961901,chr8:128961907,chr8:128961953,chr8:128961953,chr8:128961944,chr8:128961948,chr8:128961916,chr8:128961952,chr8:128961957,chr8:128961953,chr8:128961936,chr8:128961928,chr8:128961954,chr8:128961964,chr8:128961947,chr8:128961949 chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080599,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080623,chr11:35080599,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 0 1 4 1454 27 ENST00000651587.1 ENST00000702237.1 downstream downstream duplicates(1),mismatches(1) ATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAATGAAGCATCCACACAGTCCATCC...CTGTGAATCAAAACACATGTCATAGCTGGAACGAAAGCATTAGGACCATCTAACTGGATTCCACTGGAATGAGTCTCTGTGAAACCATGCCGAAGTCTTTGTAAACAACCACCCTAAAGAAAGCTACATGAAGAATAGCCAATAACAAAAGCACTGGATTTAACTCAATTTTGTGAAAAAACAAAAAAAACAAATATGATGCACACACTCTATCCTTTTGTG?ACAAAATGCCACCAAACATTTGAAACTGGCCTAAGCATACATTGACATGTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17877 PVT1::ENSG00000289526 ENSG00000249859.14::ENSG00000289526.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3097 TRUE 1166 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35030265:- chr11:35035622-35088739:- chr11:35051812:- chr8:127949648,chr8:127949654,chr8:127949663,chr8:127949667,chr8:127949683,chr8:127949683,chr8:127949672,chr8:127949671,chr8:127949655,chr8:127949661,chr8:127949707,chr8:127949707,chr8:127949698,chr8:127949702,chr8:127949670,chr8:127949706,chr8:127949711,chr8:127949707,chr8:127949690,chr8:127949682,chr8:127949708,chr8:127949718,chr8:127949701,chr8:127949703 chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059052,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059076,chr11:35059052,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059075,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077,chr11:35059077 NA NA chr8:128961894,chr8:128961900,chr8:128961909,chr8:128961913,chr8:128961929,chr8:128961929,chr8:128961918,chr8:128961917,chr8:128961901,chr8:128961907,chr8:128961953,chr8:128961953,chr8:128961944,chr8:128961948,chr8:128961916,chr8:128961952,chr8:128961957,chr8:128961953,chr8:128961936,chr8:128961928,chr8:128961954,chr8:128961964,chr8:128961947,chr8:128961949 chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080599,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080623,chr11:35080599,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080622,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624,chr11:35080624 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 1 1 2 4484 9 ENST00000667305.1 ENST00000702237.1 downstream downstream duplicates(1),mismatches(1) GCGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AACACACCCTTCAAAGTGCTAATGCTGTTCCAGCTCAGCAGACACCTCGTCTCGGGAAAGCCATTAGAAACCCCCAAAATACTACATTTTTCTCCTG___AGCTTTGAACCCTGAACCCAGCATTCTGAGAGTGGGAACCAGAAATGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17880 FGFR2::ENSG00000227307 ENSG00000066468.24::ENSG00000227307.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3098 TRUE 1167 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121564502:- chr10:123237846-123357972:- chr10:123324016:- ENSG00000227307 ENSG00000227307.1 lncRNA - - chr10:120925547-120980700:- chr10:120978103:- chr10:122685059-122740213:- chr10:122737616:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron deletion medium none Immunoglobulin_domain(100%)| I-set(0%),Ig_3(1%)| 82 4 17 19990 251 ENST00000613048.4 unknown upstream downstream duplicates(12),mismappers(5),mismatches(2) CCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG___...CAATAGGACAGTGCTT...ATAAAGGGCGCCACGCCTAGAGACTCCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA|CCTCCAGCTTGAAGAGCTGAACGTCTAACCCATGACCATCACACGTAATAAA ikgatprdsglyactasrtvdsetwyfmvnvtDAISSGDDEDDTDGAEDFVSENSNNK|tsslks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17881 FGFR2::ENSG00000227307 ENSG00000066468.24::ENSG00000227307.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3098 TRUE 1167 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121565438:- chr10:123237846-123357972:- chr10:123324952:- ENSG00000227307 ENSG00000227307.1 lncRNA - + chr10:120925547-120980700:- chr10:120960834:+ chr10:122685059-122740213:- chr10:122720347:+ chr10:121547106,chr10:121547192,chr10:121555073,chr10:121555101,chr10:121555112,chr10:121554614,chr10:121562302,chr10:121561444,chr10:121562415,chr10:121562433,chr10:121562455,chr10:121562518,chr10:121562560,chr10:121562576,chr10:121547118,chr10:121486468,chr10:121486651,chr10:121562539,chr10:121562417,chr10:121562375,chr10:121562292,chr10:121496970,chr10:121496968,chr10:121496967,chr10:121496966,chr10:121496961,chr10:121496921,chr10:121497039,chr10:121497051,chr10:121497062 chr10:120935182,chr10:120935181,chr10:120928936,chr10:120929081,chr10:120929063,chr10:120928966,chr10:120944368,chr10:120944374,chr10:120944265,chr10:120944246,chr10:120944206,chr10:120944304,chr10:120944101,chr10:120944096,chr10:120935253,chr10:120941722,chr10:120942189,chr10:120944077,chr10:120944175,chr10:120944299,chr10:120944378,chr10:120958682,chr10:120958684,chr10:120958685,chr10:120958686,chr10:120958695,chr10:120958745,chr10:120958628,chr10:120958607,chr10:120958590 NA NA chr10:123306620,chr10:123306706,chr10:123314587,chr10:123314615,chr10:123314626,chr10:123314128,chr10:123321816,chr10:123320958,chr10:123321929,chr10:123321947,chr10:123321969,chr10:123322032,chr10:123322074,chr10:123322090,chr10:123306632,chr10:123245982,chr10:123246165,chr10:123322053,chr10:123321931,chr10:123321889,chr10:123321806,chr10:123256484,chr10:123256482,chr10:123256481,chr10:123256480,chr10:123256475,chr10:123256435,chr10:123256553,chr10:123256565,chr10:123256576 chr10:122694694,chr10:122694693,chr10:122688448,chr10:122688593,chr10:122688575,chr10:122688478,chr10:122703881,chr10:122703887,chr10:122703778,chr10:122703759,chr10:122703719,chr10:122703817,chr10:122703614,chr10:122703609,chr10:122694765,chr10:122701235,chr10:122701702,chr10:122703590,chr10:122703688,chr10:122703812,chr10:122703891,chr10:122718195,chr10:122718197,chr10:122718198,chr10:122718199,chr10:122718208,chr10:122718258,chr10:122718141,chr10:122718120,chr10:122718103 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Immunoglobulin_domain(100%)| I-set(0%),Ig_3(1%)| 3 0 5 16715 11 ENST00000358487.10 unknown upstream upstream duplicates(1) GTCGCTTTCTCCATCCCGACCCACGCGGGGCGCGGGGACAACACAGGTCGCGGAGGAGCGTTGCCATTCAAG___TGACTGCAGCAGCAGCGGCAGCGCCTCGG...GTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG___AGCCACCAACCAAATACCAAAT...GCTAGAGGTGCGCTGCCTGTTGAAAGATGCCGCCGTGATCAGTTGGACTAAGGATGGGGTGCACTTGGGGCCCAACAATAGGACAGTGCTTATTGGGGAGTACTTGCAGATAAAGGGCGCCACGCCTAGAGACTCCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG|GCAGGAAAGACCCTTCTTGCGCTTAGGAACACCAGACGGCACTTCAGCACTGTGCCTAGGGGCCATTTTAAACAGCGAAATCATCA...ATGAAAGGACATTTGCTCATAGTGTGAGAGCTGAACATGCACATACGTGTTCATCACTCTGCGCTTGTCTGTGAATGACCGTGAACATGCTaCAAGTCTTGATTTGGGGGTTACAAGTTAATTTTATCAAGTAGAAGAATTTGCCAACATGGAATTTATGAACA LEVRCLLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVT|grkdpsca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17882 PVT1::CD44 ENSG00000249859.14::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3099 TRUE 1168 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Extracellular_link_domain(100%) |Xlink(100%) 11 9 74 4484 34774 ENST00000667305.1 ENST00000263398.11 downstream upstream duplicates(12),mismatches(11),multimappers(2) GCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG___GTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGGGGTGTACATCCTCACATCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17883 PVT1::CD44 ENSG00000249859.14::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3099 TRUE 1168 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Extracellular_link_domain(100%) |Xlink(100%) 2 0 79 889 34774 ENST00000662410.1 ENST00000263398.11 downstream upstream duplicates(12),mismatches(9),multimappers(2) GCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___...TATCAATCCTCAGAAC...GGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG___GTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGGGGTGTACATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17885 PVT1::CD44 ENSG00000249859.14::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3099 TRUE 1168 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35208105:+ chr11:35160429-35253949:+ chr11:35229652:+ chr8:127803744,chr8:127803934,chr8:127804015,chr8:127903012,chr8:127803826,chr8:127804008 chr11:35188952,chr11:35188666,chr11:35188739,chr11:35199915,chr11:35188775,chr11:35188776 NA NA chr8:128815990,chr8:128816180,chr8:128816261,chr8:128915258,chr8:128816072,chr8:128816254 chr11:35210499,chr11:35210213,chr11:35210286,chr11:35221462,chr11:35210322,chr11:35210323 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Extracellular_link_domain(7%) |Xlink(30%) 1 0 3 4484 56534 ENST00000651587.1 ENST00000428726.8 downstream upstream duplicates(1) CTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATATGGACTCCAGTCATAGTAcAACGCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17886 PVT1::CD44 ENSG00000249859.14::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3099 TRUE 1168 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35229129:+ chr11:35160429-35253949:+ chr11:35250676:+ chr8:127992293,chr8:127803826,chr8:127804008,chr8:127803744,chr8:127803934,chr8:127804015,chr8:127903012,chr8:127989474,chr8:128029426,chr8:128028990 chr11:35220870,chr11:35188775,chr11:35188776,chr11:35188952,chr11:35188666,chr11:35188739,chr11:35199915,chr11:35213479,chr11:35227146,chr11:35227331 NA NA chr8:129004539,chr8:128816072,chr8:128816254,chr8:128815990,chr8:128816180,chr8:128816261,chr8:128915258,chr8:129001720,chr8:129041672,chr8:129041236 chr11:35242417,chr11:35210322,chr11:35210323,chr11:35210499,chr11:35210213,chr11:35210286,chr11:35221462,chr11:35235026,chr11:35248693,chr11:35248878 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 1 4484 48546 ENST00000651587.1 ENST00000263398.11 downstream upstream duplicates(1) CTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGTGGGCAGAAGAAAAAGCTAGTGAgCAACAGTGGCAATGGAGCTGT...TGCATTTGGTGAACAAGGAGTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATTGGGGTGTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17887 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34931404:+ chr11:34937376-35042138:+ chr11:34952951:+ chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127978766 chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:34924501 NA NA chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:128991012 chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:34946048 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(100%),Biotin-requiring_enzyme(100%),e3_binding_domain(100%) |2-oxoacid_dh(100%),Biotin_lipoyl(78%),E3_binding(100%) 2 1 38 4484 16074 ENST00000651587.1 ENST00000227868.9 downstream upstream duplicates(7),mismappers(6),mismatches(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGATCCCATTAAGATACTAATGCCATCACTGTCTCCTACAATGGAAGAAGGAAACATTGTGAAATGGCTGAAAAAGGAAG___GTGAAGCGGTGAGTGCTGGAGATGCATTATGTGAAATTGAGACTGACAAAGCTGTGGTTACCTTAGATGCAAGTGATGATGGAATCTTGGCCAAAATCGTG___GTTGAAGAAGGAAGTAAAAATATAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17888 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34947506:+ chr11:34937376-35042138:+ chr11:34969053:+ chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127978766,chr8:127831310,chr8:127831260 chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:34924501,chr11:34936781,chr11:34936885 NA NA chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:128991012,chr8:128843556,chr8:128843506 chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:34946048,chr11:34958328,chr11:34958432 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(100%),Biotin-requiring_enzyme(80%),e3_binding_domain(100%) |2-oxoacid_dh(100%),Biotin_lipoyl(54%),E3_binding(100%) 1 0 37 4484 18324 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(6),mismappers(6),mismatches(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGAAGCGGTGAGTGCTGGAGATGCATTATGTGAAATTGAGACTGACAAAGCTGTGGTTACCTTAGATGCAAGTGATGATGGAATCTTGGCCAAAATCGTG___GTTGAAGAAGGAAGTAAAAATATACGGCTAGGTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17889 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34957384:+ chr11:34937376-35042138:+ chr11:34978931:+ chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127978766,chr8:127831310,chr8:127831260 chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:34924501,chr11:34936781,chr11:34936885 NA NA chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:128991012,chr8:128843556,chr8:128843506 chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:34946048,chr11:34958328,chr11:34958432 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(19%),e3_binding_domain(100%) |2-oxoacid_dh(79%),Biotin_lipoyl(40%),E3_binding(100%) 1 0 36 4484 9933 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(6),mismappers(6),mismatches(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGAAGAAGGAAGTAAAAATATACGGCTAGGTTCACTAATTGGTTTGATAGTAGAAGAAGGAGAAGATTGGAAACATGTTGAAATTCCCAAAGACGTAGGTCCTCCACCACCAGTTTCAAAACCTTCAGAGCCTCGCCCCTCACCAGAACCACAGATTTCCATCCCTGTCAAGAAGGAACACATACCCGGGACACTACG___GTTCCGTTTAAGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17890 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34966640:+ chr11:34937376-35042138:+ chr11:34988187:+ chr8:127831310,chr8:127831260,chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127978766 chr11:34936781,chr11:34936885,chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:34924501 NA NA chr8:128843556,chr8:128843506,chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:128991012 chr11:34958328,chr11:34958432,chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:34946048 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(6%),e3_binding_domain(9%) |2-oxoacid_dh(59%),Biotin_lipoyl(26%),E3_binding(0%) 0 1 33 4484 9076 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(5),mismappers(6),mismatches(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGATGCTCTCAAACTTGTCCAGTTGAAACAAACGGGCAAGATTACCGAGTCCAGACCAACTCCAGCCCCCACAGCCACTCCCACAGCACCTTCGCCCCTACAGGCCACAGCTGGACCATCTTATCCCCGGCCTGTGATCCCACCAGTATCAACTCCTGGACAACCCAATGCAGTG___GGCACATTCACTGAAATCCCCGCCAGCAATATTCGAAGAGTcATTGCCAAGAGATTAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17891 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34984570:+ chr11:34937376-35042138:+ chr11:35006117:+ chr8:127978766,chr8:127831310,chr8:127831260,chr8:127835415,chr8:127835435,chr8:127835447,chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336 chr11:34924501,chr11:34936781,chr11:34936885,chr11:34981204,chr11:34981222,chr11:34981242,chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481 NA NA chr8:128991012,chr8:128843556,chr8:128843506,chr8:128847661,chr8:128847681,chr8:128847693,chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582 chr11:34946048,chr11:34958328,chr11:34958432,chr11:35002751,chr11:35002769,chr11:35002789,chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(75%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(22%),Biotin_lipoyl(0%) 2 1 28 4484 10173 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(5),mismappers(6),mismatches(3) GCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CAAATGCCAGATGTTAATGTAAGCTGGGATGGAGAGGGCCCAAAGCAACTGCCATTTATTGACATTTCAGTGGCTGTGGCAACAGATAAAGGCTTACTTACTCCAATCATAAAAGATGCTGCTGCTAAAGGTATCCAGGAAATTGCTGACTCTGTAAAG___GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAGGATCTTTTAG___TATTTCCAACTTGGGGATGTTTGGCATCGACGAATTTAC?GCAGTGATTAACCCTCCTCAGGCCTGCATTTTGGCGGTTGGGAGGTTCCGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17892 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34978124:+ chr11:34937376-35042138:+ chr11:34999671:+ chr8:127978766,chr8:127831310,chr8:127831260,chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336 chr11:34924501,chr11:34936781,chr11:34936885,chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481 NA NA chr8:128991012,chr8:128843556,chr8:128843506,chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582 chr11:34946048,chr11:34958328,chr11:34958432,chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(82%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(35%),Biotin_lipoyl(9%) 1 3 24 4484 8603 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(5),mismappers(6),mismatches(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATGACATTAAAGTATCAGTAAATGATTTTATCATCAAGGCAGCAGCTGTTACCCTTAAA___CAAATGCCAGATGTTAATGTAAGCTGGGATGGAGAGGGCCCAAAGCAACTGCCATTTATTGACATTTCAG...AAAGATGCTGCTGCTAAAGGTATCCAGGAAATTGCTGACTCTGTAAAG___GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGG...AAGTATGAAGTGGATGAAATGTTTATTTATTTAAGGTGAAAGCATTTGACCCAGGGTGTCTTCATCTTCAATTTGGGTTTAATGTTATAGAAATAAATGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17893 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34992315:+ chr11:34937376-35042138:+ chr11:35013862:+ chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127978766,chr8:127831310,chr8:127831260,chr8:127835415,chr8:127835435,chr8:127835447,chr8:127850866,chr8:127850909,chr8:128041512,chr8:127838044,chr8:127838082 chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:34924501,chr11:34936781,chr11:34936885,chr11:34981204,chr11:34981222,chr11:34981242,chr11:34986014,chr11:34986205,chr11:34987466,chr11:34988776,chr11:34989752 NA NA chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:128991012,chr8:128843556,chr8:128843506,chr8:128847661,chr8:128847681,chr8:128847693,chr8:128863112,chr8:128863155,chr8:129053758,chr8:128850290,chr8:128850328 chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:34946048,chr11:34958328,chr11:34958432,chr11:35002751,chr11:35002769,chr11:35002789,chr11:35007561,chr11:35007752,chr11:35009013,chr11:35010323,chr11:35011299 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(37%) |2-oxoacid_dh(5%) 1 0 18 4484 11351 ENST00000651587.1 ENST00000448838.8 downstream upstream duplicates(4),mismappers(6),mismatches(2) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAGGATCTTTTAG___TATTTCCAACTTGGGGATGTTTGGCATCGACGAATTTACTGCAGTGATTAACCCTCCTCAGGCCTGCATTTTGGCGGTTGGGAGGTTCCGACCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17894 PVT1::PDHX ENSG00000249859.14::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3100 TRUE 1169 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:35020208:+ chr11:34937376-35042138:+ chr11:35041755:+ chr8:127978830,chr8:127978976,chr8:127978971,chr8:127979336,chr8:127999569,chr8:127978766,chr8:127831310,chr8:127831260,chr8:127835415,chr8:127835435,chr8:127835447,chr8:127850866,chr8:127850909,chr8:128041512,chr8:127838044,chr8:127835345,chr8:127835350,chr8:127835265,chr8:127835268,chr8:127835305,chr8:127835208,chr8:127835268,chr8:127835235,chr8:127835245,chr8:127835234,chr8:127835227,chr8:127835257,chr8:127835611,chr8:127961953,chr8:127835576,chr8:127835488,chr8:127835490,chr8:127835304,chr8:128042965,chr8:128042982,chr8:128042977,chr8:128042978,chr8:128042974,chr8:128042992,chr8:128042994,chr8:128043002,chr8:128043002,chr8:127835249,chr8:127835321,chr8:127835320,chr8:127835193,chr8:127838082 chr11:34924274,chr11:34924477,chr11:34924474,chr11:34924481,chr11:35002197,chr11:34924501,chr11:34936781,chr11:34936885,chr11:34981204,chr11:34981222,chr11:34981242,chr11:34986014,chr11:34986205,chr11:34987466,chr11:34988776,chr11:35004924,chr11:35004930,chr11:35004934,chr11:35004934,chr11:35004952,chr11:35004966,chr11:35005010,chr11:35005024,chr11:35005034,chr11:35005035,chr11:35005041,chr11:35005045,chr11:35004656,chr11:35004662,chr11:35004662,chr11:35004751,chr11:35004764,chr11:35004900,chr11:35008949,chr11:35008953,chr11:35009088,chr11:35009089,chr11:35009091,chr11:35009103,chr11:35009109,chr11:35009119,chr11:35009134,chr11:35004918,chr11:35004927,chr11:35004881,chr11:35005024,chr11:34989752 NA NA chr8:128991076,chr8:128991222,chr8:128991217,chr8:128991582,chr8:129011815,chr8:128991012,chr8:128843556,chr8:128843506,chr8:128847661,chr8:128847681,chr8:128847693,chr8:128863112,chr8:128863155,chr8:129053758,chr8:128850290,chr8:128847591,chr8:128847596,chr8:128847511,chr8:128847514,chr8:128847551,chr8:128847454,chr8:128847514,chr8:128847481,chr8:128847491,chr8:128847480,chr8:128847473,chr8:128847503,chr8:128847857,chr8:128974199,chr8:128847822,chr8:128847734,chr8:128847736,chr8:128847550,chr8:129055211,chr8:129055228,chr8:129055223,chr8:129055224,chr8:129055220,chr8:129055238,chr8:129055240,chr8:129055248,chr8:129055248,chr8:128847495,chr8:128847567,chr8:128847566,chr8:128847439,chr8:128850328 chr11:34945821,chr11:34946024,chr11:34946021,chr11:34946028,chr11:35023744,chr11:34946048,chr11:34958328,chr11:34958432,chr11:35002751,chr11:35002769,chr11:35002789,chr11:35007561,chr11:35007752,chr11:35009013,chr11:35010323,chr11:35026471,chr11:35026477,chr11:35026481,chr11:35026481,chr11:35026499,chr11:35026513,chr11:35026557,chr11:35026571,chr11:35026581,chr11:35026582,chr11:35026588,chr11:35026592,chr11:35026203,chr11:35026209,chr11:35026209,chr11:35026298,chr11:35026311,chr11:35026447,chr11:35030496,chr11:35030500,chr11:35030635,chr11:35030636,chr11:35030638,chr11:35030650,chr11:35030656,chr11:35030666,chr11:35030681,chr11:35026465,chr11:35026474,chr11:35026428,chr11:35026571,chr11:35011299 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 2 5 10 4484 430 ENST00000651587.1 ENST00000477173.3 downstream upstream duplicates(1),mismappers(6),mismatches(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATGGAGTCTGGCTCTGTCGCCCAGGCTGCAATGCAGTGGTATGATCTAGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCCTGGCTGATTTTTGTATTTTTAGTAGAaACGAGGTTTCACCATGTTGACTGGGCTGGTCTgAAACTCCCgACCTCAGATGATCTGCCTGCCTCAGCCTCGCAAATAAGAATATATTTCAGTGTCTTCTTGTTTACTAGCTTTGTTTCTATTAATGGCAGTTCTCCAAAATCTTCAAGAGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17895 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35221732:+ chr11:35160429-35253949:+ chr11:35243279:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Extracellular_link_domain(100%)| Xlink(100%)| 2 0 29 50763 62 ENST00000263398.11 ENST00000532760.1 downstream upstream duplicates(5),mismatches(1) CTGAAGGCTCAACTACTTTACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGTGACCTCAGCTAAGACTGGGTCC...CTCATGGATCTGAATCAGATG___GACACTCACATGGGAGTCAAGAAGGTGGAGCAAACACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAG___AATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCA HGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRr|taghvqsnvwkesaiseepksgviiimedesvfqclphsfpkvnhpglgcsniwnslsttstsvtqnvthllpmfsdhiesergnktyklls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17896 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35214914:+ chr11:35160429-35253949:+ chr11:35236461:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Extracellular_link_domain(92%)| Xlink(84%)| 1 1 23 33780 62 ENST00000428726.8 ENST00000532760.1 downstream upstream duplicates(4),mismatches(1) GCAGGACCTTCATCCCAGTGACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTCTAATGTCAATCGTTCCTTATCA...AGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCTGAATCAGATG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCA DTFHPSGGSHTTHGSESD|gllgmfkamygksppsqrnqrve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17897 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35190065:+ chr11:35160429-35253949:+ chr11:35211612:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Extracellular_link_domain(92%)| Xlink(29%)| 1 7 13 54360 62 ENST00000263398.11 ENST00000532760.1 downstream upstream duplicates(2),mismatches(1) GTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAATGCTTCAG___CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAA___CTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAATACAG...GACGTGAGCAGCGGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACTGTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCA|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCAAGATTGACAAACTCCG DVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT|rllgmfkamygksppsqrnqrve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17898 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35204640:+ chr11:35160429-35253949:+ chr11:35226187:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site deletion/read-through low none Extracellular_link_domain(92%)| Xlink(62%)| 0 2 17 14117 62 ENST00000531110.6 ENST00000532760.1 downstream upstream duplicates(1),mismatches(1) ACAGCACAGACAGAATCCCTGCTACCA___TCCAGGCAACTCCTAGTAGTACAACGGAAGAAACAGCTACCCAGAAGGAACAGTGGTTTGGCAACAGATGGCATGAGGGATATCGCCAAACACCCAgAGAAGACTCCCATTCGACAACAGGGACAGCTG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCAAGATTGACAAACTCCG...GACAGGTGCAGCAGGCCAGGCATAAGTAATAGGGAGCAGGGGAGACTGTGGGAAACTGAAGGGCAGCTGTCTCATAAGAGGATGAAATTCTAATCTTTTACAATATATTTCAAGGCAAACAAAGCAACACTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17899 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35180407:+ chr11:35160429-35253949:+ chr11:35201954:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Extracellular_link_domain(92%)| Xlink(8%)| 2 1 10 40175 62 ENST00000263398.11 ENST00000532760.1 downstream upstream duplicates(1) CGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCC...GAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG___GTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAATGCTTCAG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCAAGATTGACAAACTCCG EAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNAS|gllgmfkamygksppsqrnqrve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17900 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none none none 3 1 4 29118 62 ENST00000263398.11 ENST00000532760.1 downstream upstream duplicates(1) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCA...ACAAACTCCGTTGTCTTAAAGGGCTAAGCTGTGGTGACAGGTGCAGCAGGCCAGGCATAAGTAATAGGGAGCAGGGGAGACTGTGGGAAACTGAAGGGCAG MDKFWWHAAWGLCLVPLSLAQI|gllgmfkamygksppsqrnqrve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17901 CD44::SLC1A2-AS1 ENSG00000026508.21::ENSG00000255004.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3101 TRUE 1170 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176740:+ chr11:35160429-35253949:+ chr11:35198287:+ SLC1A2-AS1 ENSG00000255004.1 lncRNA + + chr11:35281813-35286009:+ chr11:35285337:+ chr11:35303360-35307556:+ chr11:35306884:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Extracellular_link_domain(48%)| Xlink(0%)| 0 1 4 42510 62 ENST00000263398.11 ENST00000532760.1 downstream upstream none CTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG|GACTGCTGGgCATGTTCAAAGCAATGTATGGAAAGAGTCCGCCATCTCAGAGGAACCAAAGAGTGGAGTGATTATCATCATGGAGGATGAAAGTGTATTCCAGTGTCTACCTCATTCATTTCCTAAAGTGAATCACCCAGGCCTTGGCTGTTCTAATATCTGGAATTCTCTTTCTACTACAAGTACATCTGTCACACAGAATGTTACCCACTTACTCCCTATGTTTTCTGATCACATAGAATCTGAGAGGGGAAATAAAACTTATAAATTGTTGAGTCCAA LPTMAQMEKALSIGFETCr|taghvqsnvwkesaiseepksgviiimedesvfqclphsfpkvnhpglgcsniwnslsttstsvtqnvthllpmfsdhiesergnktykllsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17902 PVT1::LDLRAD3 ENSG00000249859.14::ENSG00000179241.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LDLRAD3 ENSG00000179241.13 protein_coding + - chr11:35943981-36232136:+ chr11:36078137:- chr11:35965531-36253686:+ chr11:36099687:- chr8:127804799,chr8:127805219 chr11:36100737,chr11:36100629 NA NA chr8:128817045,chr8:128817465 chr11:36122287,chr11:36122179 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' medium none none none 7 1 21 4484 4 ENST00000667305.1 unknown downstream downstream duplicates(5) CCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCTCATAAAAACTCCGGACTCAGCCAGACTTGAGGAGACAACAGGACAAGCTGCAGAGAGGAGCTACCCTCTCTGCTGAGAGCTGAACACTCATCAAGATACCCTGGCTACGGAGAGGAGCTGCCCACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17906 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35186900:+ chr11:35160429-35253949:+ chr11:35208447:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34947506:+ chr11:34937376-35042138:+ chr11:34969053:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Extracellular_link_domain(92%)|2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(100%),Biotin-requiring_enzyme(80%),e3_binding_domain(100%) Xlink(22%)|2-oxoacid_dh(100%),Biotin_lipoyl(54%),E3_binding(100%) 0 1 20 40301 18324 ENST00000263398.11 ENST00000448838.8 downstream upstream duplicates(2),mismappers(4),mismatches(4) TATTGCTTCAATGCTTCAG___CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAA|GTGAAGCGGTGAG...GAAATTGAGACTGACAAAGCTGTGGTTACCTTAGATGCAAGTGATGATGGAATCTTGGCCAAAATCGTG___GTTGAAGAAGGAAGTAAAAATATACGGCTAGGTTCACTAATTGGTTTGATAGTAGAAGAAGGAGAAGATTGGAAACATGTTGAAATTCCCAAAGACGTAGGTCCTCCACCACCAG YCFNASAPPEEDCTSVTDLPNAFDGPITI|sEAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17907 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34947506:+ chr11:34937376-35042138:+ chr11:34969053:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(100%),Biotin-requiring_enzyme(80%),e3_binding_domain(100%) |2-oxoacid_dh(100%),Biotin_lipoyl(54%),E3_binding(100%) 1 0 20 29118 18324 ENST00000263398.11 ENST00000448838.8 downstream upstream duplicates(2),mismappers(4),mismatches(4) AGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GTGAAGCGGTGAGTGCTGGAGATGCATTATGTGAAATTGAGACTGACAAAGCTGTGGTTACCTTAGATGCAAGTGATGATGGAATCTTGGCCAAAATCGTG___GTTGAAGAAGGAAGTAAAAATATACGGCTAGGTTCACTAATTGGTTTGATAGTAGAAGAAGGAGAAGATTGGAAACATGTTGAAATTCCCAAAG MDKFWWHAAWGLCLVPLSLAQI|gEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVEIPK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17909 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34970139:+ chr11:34937376-35042138:+ chr11:34991686:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(52%),Biotin_lipoyl(21%) 5 1 11 29118 11231 ENST00000263398.11 ENST00000448838.8 downstream upstream duplicates(1),mismappers(4),mismatches(4) AGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GGCACATTCACTGAAATCCCCGCCAGCAATATTCGAAGAGTcATTGCCAAGAGATTAACTGAATCTAAAAGTACTGTACCTCATGCATATGCTACTGCTGACTGTGACCTTGGAGCTGTTTTAAAAGTTAGGCAAGATCTGGTCAAAG___ATGACATTAAAGTATCAGTAAATGATTTTATCATCAAGGCAGCAGCTGTTACCCTTA MDKFWWHAAWGLCLVPLSLAQI|ghih* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17910 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34960420:+ chr11:34937376-35042138:+ chr11:34981967:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(6%),e3_binding_domain(100%) |2-oxoacid_dh(73%),Biotin_lipoyl(35%),E3_binding(100%) 0 1 16 29118 11563 ENST00000263398.11 ENST00000448838.8 downstream upstream duplicates(1),mismappers(4),mismatches(4) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GTTCCGTTTAAGTCCAGCTG...CTAAAAGTACTGTACCTCATGCATATGCTACTGCTGACTGTGACCTTGGAGCTGTTTTAAAAGTTAGGCAAGATCTGGTCAAAG___ATGACATTAAAGTATCA MDKFWWHAAWGLCLVPLSLAQI|gsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17911 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34966640:+ chr11:34937376-35042138:+ chr11:34988187:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(6%),e3_binding_domain(9%) |2-oxoacid_dh(59%),Biotin_lipoyl(26%),E3_binding(0%) 0 1 16 29118 9076 ENST00000263398.11 ENST00000448838.8 downstream upstream duplicates(1),mismappers(4),mismatches(4) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GGATGCTCTCAAACTTGTCCAGTTGAAACAAACGGGCAAGATTACCGAGTCCAGACCAACTCCAGCCCCCACAGCCACTCCCACAGCACCTTCGCCCCTACAGGCCACAGCTGGACCATCTTATCCCCGGCCTGTGATCCCAC...TCACTGAAATCCCCGCCAGCAATATTCGAAGAGTcATTGCCAAGAGATTAACTGAATCTAAAAGTACTGTACCTCATGCATATGCTACTGCTGACTGTGAC MDKFWWHAAWGLCLVPLSLAQI|gmlsnlss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17912 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34978124:+ chr11:34937376-35042138:+ chr11:34999671:+ chr11:35176421,chr11:35176189,chr11:35176203,chr11:35176054,chr11:35176061 chr11:34972628,chr11:34972683,chr11:34972394,chr11:34972409,chr11:34972399 NA NA chr11:35197968,chr11:35197736,chr11:35197750,chr11:35197601,chr11:35197608 chr11:34994175,chr11:34994230,chr11:34993941,chr11:34993956,chr11:34993946 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(82%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(35%),Biotin_lipoyl(9%) 1 0 10 29118 8603 ENST00000263398.11 ENST00000448838.8 downstream upstream mismappers(4),mismatches(3) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|ATGACATTAAAGTATCAGTAAATGATTTTATCATCAAG MDKFWWHAAWGLCLVPLSLAQI|dDIKVSVNDFII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17913 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34984570:+ chr11:34937376-35042138:+ chr11:35006117:+ chr11:35176421,chr11:35176189,chr11:35176203,chr11:35176054,chr11:35176061 chr11:34972628,chr11:34972683,chr11:34972394,chr11:34972409,chr11:34972399 NA NA chr11:35197968,chr11:35197736,chr11:35197750,chr11:35197601,chr11:35197608 chr11:34994175,chr11:34994230,chr11:34993941,chr11:34993956,chr11:34993946 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(75%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(22%),Biotin_lipoyl(0%) 0 1 10 29118 10173 ENST00000263398.11 ENST00000448838.8 downstream upstream mismappers(4),mismatches(3) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|CAAATGCCAGATGTTAATGTAAGCTGGGATGGAGAGGGCCCAAAGCAACTGCCATTTATTGACATTTCAGTGGCTGTGGCAACAGATAAAGGCTTACTTACTCCAATCATAAAAGATGCTGCTGCTAAAGGTATCCAGGAAATTGCTGACTCTGTAAAG___GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAG MDKFWWHAAWGLCLVPLSLAQI|anarc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17914 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:35020208:+ chr11:34937376-35042138:+ chr11:35041755:+ chr11:35225598,chr11:35225543,chr11:35225485,chr11:35176421,chr11:35176189,chr11:35176203,chr11:35176054,chr11:35225561,chr11:35176061 chr11:35010654,chr11:35010648,chr11:35010648,chr11:34972628,chr11:34972683,chr11:34972394,chr11:34972409,chr11:35005781,chr11:34972399 NA NA chr11:35247145,chr11:35247090,chr11:35247032,chr11:35197968,chr11:35197736,chr11:35197750,chr11:35197601,chr11:35247108,chr11:35197608 chr11:35032201,chr11:35032195,chr11:35032195,chr11:34994175,chr11:34994230,chr11:34993941,chr11:34993956,chr11:35027328,chr11:34993946 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 2 2 5 29118 430 ENST00000263398.11 ENST00000477173.3 downstream upstream duplicates(2),mismappers(4) CCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACA...GTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|ATGGAGTCTGGCTCTGTCGCCCAGGCTGCAATGCAGTGGTATGATCTAGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCCTGGCTGATTTTTGTATTTTTAGTAGAaACGAGGTTTCACCATGTTGACTGGGCTGGTCTgAAACTCCCgACCTCAGAT FWWHAAWGLCLVPLSLAQI|dgvwlcrpgcnavv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17915 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34992315:+ chr11:34937376-35042138:+ chr11:35013862:+ chr11:35176421,chr11:35176189,chr11:35176203,chr11:35176054,chr11:35176061 chr11:34972628,chr11:34972683,chr11:34972394,chr11:34972409,chr11:34972399 NA NA chr11:35197968,chr11:35197736,chr11:35197750,chr11:35197601,chr11:35197608 chr11:34994175,chr11:34994230,chr11:34993941,chr11:34993956,chr11:34993946 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(37%) |2-oxoacid_dh(5%) 0 1 7 29118 11351 ENST00000526025.2 ENST00000448838.8 downstream upstream mismappers(4),mismatches(2) AAAACTGCAGCCAACTTCCGAGGCAGCCTCATTGCCCAGCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGcTTTGtTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAGGATCTTTTAG___TATTTCCA...___ATGGAGTCTGGCTCTGTCGCCCAGGCTGCAATGCAGTGGTATGATCTAG MDKlcWHAAWGLCLVPLSLAQI|gsikeskrwkiva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17916 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35210054:+ chr11:35160429-35253949:+ chr11:35231601:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:35020208:+ chr11:34937376-35042138:+ chr11:35041755:+ chr11:35225561,chr11:35225598,chr11:35225543,chr11:35225485 chr11:35005781,chr11:35010654,chr11:35010648,chr11:35010648 NA NA chr11:35247108,chr11:35247145,chr11:35247090,chr11:35247032 chr11:35027328,chr11:35032201,chr11:35032195,chr11:35032195 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Extracellular_link_domain(92%)| Xlink(74%)| 0 1 6 36499 430 ENST00000428726.8 ENST00000477173.3 downstream upstream mismappers(4) AGCAGAGTAATTCTCAGAGCTTCTCTACATCACATGAAGGCTTGGAAGAAGATAAAGACCATCCAACAACTTCTACTCTGACATCAAGCA|ATGGAGTCTGGCTCTGTCGCCCA...ATGATCTAGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCCTGGCTGATTTTTGTATTTTTAGTAGAaACGAGGTTTCACCATGTTGACTGGGCTGGTCTgAAACTCCCgACCTCAGAT QSNSQSFSTSHEGLEEDKDHPTTSTLTSS|ngvwlcr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17917 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35190065:+ chr11:35160429-35253949:+ chr11:35211612:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:35020208:+ chr11:34937376-35042138:+ chr11:35041755:+ chr11:35225598,chr11:35225543,chr11:35225485,chr11:35225561 chr11:35010654,chr11:35010648,chr11:35010648,chr11:35005781 NA NA chr11:35247145,chr11:35247090,chr11:35247032,chr11:35247108 chr11:35032201,chr11:35032195,chr11:35032195,chr11:35027328 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Extracellular_link_domain(92%)| Xlink(29%)| 0 1 5 54360 430 ENST00000263398.11 ENST00000477173.3 downstream upstream mismappers(4) GACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCA|ATGGAGTCTGGCTCTGTCGCCCAGGCTGCAATGCAGTGGTATGATCTAGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCCTGGCTGATTTTTGTATTTTTAGTAGAaACGAGGTTTCACCATGTTGACTGGGCTGGTCTgAAACTCCCgACCTCAGAT DEDSPWITDSTDRIPAT|ngvwlcrpgcnavv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17918 CD44::PDHX ENSG00000026508.21::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3102 TRUE 1171 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35190065:+ chr11:35160429-35253949:+ chr11:35211612:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34966640:+ chr11:34937376-35042138:+ chr11:34988187:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Extracellular_link_domain(92%)|2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(99%),Biotin-requiring_enzyme(6%),e3_binding_domain(9%) Xlink(29%)|2-oxoacid_dh(59%),Biotin_lipoyl(26%),E3_binding(0%) 0 0 0 54360 9076 ENST00000263398.11 ENST00000448838.8 downstream upstream mismatches(1) AGAATCCCTGCTACCA|GGATGCTCTCAAACTTGTCCAGTTGAAACAAACGGGCAAGATTACCGAGTCCAGACCAACTCCAGCCCCCACAGCCACTCCCACA...ATTCGAAGAGTcATTGCCAAGAGATTAACTGAATCTAAAAGTACTGTACCTCATGCATATGCTACTGCTGACTGTGACCTTGGAGCTGTTTTAAAAGTTAG RIPAT|rmlsnlss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17920 FGFR2::LINC02930 ENSG00000066468.24::ENSG00000274461.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3103 TRUE 1172 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121564502:- chr10:123237846-123357972:- chr10:123324016:- LINC02930 ENSG00000274461.2 lncRNA + + chr10:120608580-120825317:+ chr10:120824386:+ chr10:122368092-122584829:+ chr10:122583898:+ chr10:121543553,chr10:121551043,chr10:121555073,chr10:121555101,chr10:121555224,chr10:121555249,chr10:121555279,chr10:121555289,chr10:121555293,chr10:121555311,chr10:121554644,chr10:121494896,chr10:121538507,chr10:121560345,chr10:121502855,chr10:121482931,chr10:121490601,chr10:121543451,chr10:121543761,chr10:121491909,chr10:121483046,chr10:121482922,chr10:121482962,chr10:121486529,chr10:121491176,chr10:121490181,chr10:121496950,chr10:121497004 chr10:120628160,chr10:120819787,chr10:120822443,chr10:120822596,chr10:120822523,chr10:120822505,chr10:120822530,chr10:120822523,chr10:120822548,chr10:120822506,chr10:120822672,chr10:120613326,chr10:120612860,chr10:120619187,chr10:120624848,chr10:120630974,chr10:120628017,chr10:120629211,chr10:120629517,chr10:120630453,chr10:120630810,chr10:120630998,chr10:120631032,chr10:120629362,chr10:120628784,chr10:120619289,chr10:120820814,chr10:120820750 NA NA chr10:123303067,chr10:123310557,chr10:123314587,chr10:123314615,chr10:123314738,chr10:123314763,chr10:123314793,chr10:123314803,chr10:123314807,chr10:123314825,chr10:123314158,chr10:123254410,chr10:123298021,chr10:123319859,chr10:123262369,chr10:123242445,chr10:123250115,chr10:123302965,chr10:123303275,chr10:123251423,chr10:123242560,chr10:123242436,chr10:123242476,chr10:123246043,chr10:123250690,chr10:123249695,chr10:123256464,chr10:123256518 chr10:122387672,chr10:122579299,chr10:122581955,chr10:122582108,chr10:122582035,chr10:122582017,chr10:122582042,chr10:122582035,chr10:122582060,chr10:122582018,chr10:122582184,chr10:122372838,chr10:122372372,chr10:122378699,chr10:122384360,chr10:122390486,chr10:122387529,chr10:122388723,chr10:122389029,chr10:122389965,chr10:122390322,chr10:122390510,chr10:122390544,chr10:122388874,chr10:122388296,chr10:122378801,chr10:122580326,chr10:122580262 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Immunoglobulin_domain(100%)| I-set(0%),Ig_3(1%)| 5 5 12 19990 85 ENST00000358487.10 ENST00000659883.1 upstream upstream duplicates(3),mismatches(4) GGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG___...TGCACTTGGGGCCCAACAATAGGACAGTGCTTATTGGGGAGTACTTGCAGATAAAGGGCGCCACGCCTAGAGACTCCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA|AGACAGAGCACTACGGAAGGGAGCCCCATTCCCAAGCATGGTGTCCAATACACTG___AAAGAATAACTGGGCTCAGTAATGCACCTAGAGACTCAGATTCCAGACCTGCCCACTTGCTTTACTATCCAAAACAACCATGACACATGACTTCTCTG HLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNK|ktehygrephsqawcpih* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17921 FGFR2::LINC02930 ENSG00000066468.24::ENSG00000274461.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3103 TRUE 1172 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551290:- chr10:123237846-123357972:- chr10:123310804:- LINC02930 ENSG00000274461.2 lncRNA + + chr10:120608580-120825317:+ chr10:120824386:+ chr10:122368092-122584829:+ chr10:122583898:+ chr10:121543553,chr10:121494896,chr10:121538507,chr10:121502855,chr10:121490601,chr10:121543451,chr10:121543761,chr10:121491909,chr10:121483046,chr10:121482922,chr10:121482962,chr10:121482931,chr10:121486529,chr10:121491176,chr10:121496950,chr10:121497004 chr10:120628160,chr10:120613326,chr10:120612860,chr10:120624848,chr10:120628017,chr10:120629211,chr10:120629517,chr10:120630453,chr10:120630810,chr10:120630998,chr10:120631032,chr10:120630974,chr10:120629362,chr10:120628784,chr10:120820814,chr10:120820750 NA NA chr10:123303067,chr10:123254410,chr10:123298021,chr10:123262369,chr10:123250115,chr10:123302965,chr10:123303275,chr10:123251423,chr10:123242560,chr10:123242436,chr10:123242476,chr10:123242445,chr10:123246043,chr10:123250690,chr10:123256464,chr10:123256518 chr10:122387672,chr10:122372838,chr10:122372372,chr10:122384360,chr10:122387529,chr10:122388723,chr10:122389029,chr10:122389965,chr10:122390322,chr10:122390510,chr10:122390544,chr10:122390486,chr10:122388874,chr10:122388296,chr10:122580326,chr10:122580262 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)| I-set(1%),Ig_2(0%),Ig_3(1%),ig(0%)| 0 1 12 12899 85 ENST00000613048.4 ENST00000659883.1 upstream upstream duplicates(3),mismatches(3) GGAGCATCGCATTGGAGGCTACAAG|AGACAGAGCACTACGGAAGGGAGCCCCATTCCCAAGCATGGTGTCCAATACACTG___AAAGAATAACTGGGCTCAGTAATGCACCTAGAGACTCAGATTCCAGACCTGCCCACTTGCTTTACTATCCAAAACAACCATGACACATGACTTCTCTG EHRIGGYK|rqsttegspipkhgvqyteritglsnaprdsdsrpahllyypkqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17922 PVT1::APIP ENSG00000249859.14::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3104 TRUE 1173 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) |Aldolase_II(100%) 2 3 13 889 25033 ENST00000662410.1 ENST00000395787.4 downstream downstream duplicates(1),mismatches(1) GGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATG...GGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GACAAGGAGCATCCAAGATACCTGATCCCAGAACTTTGCAAACAGTTTTACCATTTAGGCTGGGTCACTGGGACTGGAGGAGGAATTAGCTTGAAGCATGG___CGATGAAATCTACATTGCTCCTTCAGGAGTGCAAAAGGAACGAATTCAG___CCTGAAGACATGTTTGTTTaTGATATAAATGAAAAGGACATAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17923 PVT1::APIP ENSG00000249859.14::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3104 TRUE 1173 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) |Aldolase_II(100%) 0 3 11 4484 25033 ENST00000651587.1 ENST00000395787.4 downstream downstream duplicates(1),mismatches(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GACAAGGAGCATCCAAGATACCTGATCCCAGAACTTTGCAAACAGTTTTACCATTTAGGCTGGGTCACTGGGACTGGAGGAGGAATTAGCTTGAAGCATGG___CGATGAAATCTACATTGCTCCTTCAGGAGTGCAAAAGGAACGAATTCAG___CCTGAAGACATGTTTGTTTaTGATATAAATGAAAAGGACATAAGTGGACCTTCGCCATCGAAGAAGCTAAAAAAAAGCCAGTGTACTCCTCTTTTCATGAATGCTTACACAATGAGAG___GAGCAGGTGCAGTGATTCATACCCACTCTAAAGCTGCTGTGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17924 PVT1::APIP ENSG00000249859.14::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3104 TRUE 1173 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34883504:- chr11:34874641-34937926:- chr11:34905051:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Class_II_Aldolase_and_Adducin_N-terminal_domain(34%) |Aldolase_II(5%) 2 0 4 4484 16280 ENST00000651587.1 ENST00000532428.6 downstream downstream none CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATATGATGATATGTTAGTGGTACCCATTATTGAGAATACACCTGAGGAGAAAGACCTCAAAGATAGAATGGCTCATGCAATGAATGAATACCCAGACTCCTGTGCAGTACTGGTCAGACGTCATGGAGTATATGTGTGGGGGGAAACATGGGAGAAGGCCAAAACCAT___GTGTGAGTGTTATGACTATTTATTTGATATTGaCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17925 PVT1::APIP ENSG00000249859.14::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3104 TRUE 1173 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) |Aldolase_II(100%) 0 0 0 792 25033 ENST00000667305.1 ENST00000395787.4 downstream downstream mismatches(1) AAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCT...CTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|GACAAGGAGCATCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17926 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121538592:- chr10:123237846-123357972:- chr10:123298106:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491996,chr10:121492020,chr10:121492031,chr10:121491635,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495336,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121497147,chr10:121496849,chr10:121496854,chr10:121497024,chr10:121497029,chr10:121497032,chr10:121497037,chr10:121497039,chr10:121497040,chr10:121497046,chr10:121497046,chr10:121497051,chr10:121497052,chr10:121508817,chr10:121509058,chr10:121507440,chr10:121478351,chr10:121513017,chr10:121513018,chr10:121513018,chr10:121513105,chr10:121513114,chr10:121513122,chr10:121513133,chr10:121513146,chr10:121513146,chr10:121513148,chr10:121513148,chr10:121513206,chr10:121512632,chr10:121512645,chr10:121512663,chr10:121512663,chr10:121514359,chr10:121512961,chr10:121512961,chr10:121512970,chr10:121512970,chr10:121512976,chr10:121519086,chr10:121520755,chr10:121520880,chr10:121529246,chr10:121529334,chr10:121529452,chr10:121528955,chr10:121530341,chr10:121530341,chr10:121530375,chr10:121530375,chr10:121530426,chr10:121529001,chr10:121530475,chr10:121530547,chr10:121530548,chr10:121530548,chr10:121530554,chr10:121529035,chr10:121529035,chr10:121529035,chr10:121529042,chr10:121529057,chr10:121529137,chr10:121529196,chr10:121529210,chr10:121529230,chr10:121529232,chr10:121529233,chr10:121533108,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534103,chr10:121534103,chr10:121534103,chr10:121534214,chr10:121534260,chr10:121534299,chr10:121534306,chr10:121534340,chr10:121534410,chr10:121534417,chr10:121520791,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121489781,chr10:121490290,chr10:121490376,chr10:121490162,chr10:121490158,chr10:121490155,chr10:121490173,chr10:121490153,chr10:121490162,chr10:121490164,chr10:121534362,chr10:121534351,chr10:121534149,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121491644,chr10:121491598,chr10:121491624,chr10:121513133,chr10:121512951,chr10:121513026,chr10:121513002,chr10:121512963,chr10:121513113,chr10:121497022,chr10:121497088,chr10:121491744,chr10:121491700,chr10:121529913,chr10:121529217,chr10:121530456,chr10:121530454,chr10:121529263,chr10:121529164,chr10:121490151,chr10:121514497,chr10:121481890,chr10:121486661,chr10:121486484,chr10:121519484,chr10:121519483,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121507586,chr10:121507317,chr10:121507404,chr10:121507403,chr10:121482961,chr10:121482980,chr10:121513145,chr10:121513122,chr10:121513133,chr10:121513124,chr10:121513131,chr10:121513128,chr10:121494900,chr10:121534214,chr10:121534187,chr10:121534213,chr10:121534203,chr10:121490259,chr10:121490378,chr10:121490388,chr10:121490356,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121490178,chr10:121490180,chr10:121490180,chr10:121490181,chr10:121490182,chr10:121490182,chr10:121490260,chr10:121490301,chr10:121490305,chr10:121490314,chr10:121490321,chr10:121490334,chr10:121490346,chr10:121490366 chr10:121812171,chr10:121896627,chr10:121812169,chr10:121812244,chr10:121811973,chr10:121896852,chr10:121812236,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121784049,chr10:121896626,chr10:121812144,chr10:121896656,chr10:121896626,chr10:121784708,chr10:121784682,chr10:121897649,chr10:121897655,chr10:121897724,chr10:121810719,chr10:121810488,chr10:121810470,chr10:121810418,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810409,chr10:121810412,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810418,chr10:121866656,chr10:121866740,chr10:121866689,chr10:121850858,chr10:121784714,chr10:121784660,chr10:121806254,chr10:121874946,chr10:121874948,chr10:121784623,chr10:121784660,chr10:121784661,chr10:121874948,chr10:121784618,chr10:121874766,chr10:121874900,chr10:121874945,chr10:121874889,chr10:121784624,chr10:121874772,chr10:121770475,chr10:121784720,chr10:121875010,chr10:121874947,chr10:121784656,chr10:121784693,chr10:121856390,chr10:121752474,chr10:121752468,chr10:121897727,chr10:121897778,chr10:121897774,chr10:121897790,chr10:121819552,chr10:121897681,chr10:121819459,chr10:121897583,chr10:121897797,chr10:121897741,chr10:121897680,chr10:121897750,chr10:121897741,chr10:121897750,chr10:121897751,chr10:121819511,chr10:121819523,chr10:121819529,chr10:121897783,chr10:121819470,chr10:121897790,chr10:121897799,chr10:121819511,chr10:121897742,chr10:121897750,chr10:121897750,chr10:121870120,chr10:121763753,chr10:121882083,chr10:121763755,chr10:121882096,chr10:121763780,chr10:121763777,chr10:121881940,chr10:121763780,chr10:121882096,chr10:121881939,chr10:121881911,chr10:121881940,chr10:121764004,chr10:121882060,chr10:121763965,chr10:121763769,chr10:121763776,chr10:121752378,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121759447,chr10:121759546,chr10:121759629,chr10:121759723,chr10:121759723,chr10:121759726,chr10:121759723,chr10:121759724,chr10:121759721,chr10:121759721,chr10:121763729,chr10:121763720,chr10:121763784,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121782276,chr10:121783982,chr10:121784376,chr10:121784555,chr10:121784623,chr10:121784663,chr10:121784723,chr10:121784768,chr10:121784888,chr10:121810387,chr10:121810452,chr10:121812048,chr10:121812245,chr10:121819220,chr10:121819510,chr10:121819535,chr10:121819486,chr10:121819529,chr10:121819610,chr10:121833302,chr10:121835555,chr10:121841665,chr10:121885038,chr10:121885251,chr10:121856037,chr10:121856059,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121866844,chr10:121866554,chr10:121866676,chr10:121866662,chr10:121871241,chr10:121871273,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874983,chr10:121874999,chr10:121877828,chr10:121881902,chr10:121881875,chr10:121881907,chr10:121881897,chr10:121884043,chr10:121884261,chr10:121884377,chr10:121884417,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121884126,chr10:121759744,chr10:121884132,chr10:121759744,chr10:121759738,chr10:121884120,chr10:121759518,chr10:121759618,chr10:121759628,chr10:121759630,chr10:121759637,chr10:121759618,chr10:121759597,chr10:121759573 NA NA chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251510,chr10:123251534,chr10:123251545,chr10:123251149,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254850,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123256661,chr10:123256363,chr10:123256368,chr10:123256538,chr10:123256543,chr10:123256546,chr10:123256551,chr10:123256553,chr10:123256554,chr10:123256560,chr10:123256560,chr10:123256565,chr10:123256566,chr10:123268331,chr10:123268572,chr10:123266954,chr10:123237865,chr10:123272531,chr10:123272532,chr10:123272532,chr10:123272619,chr10:123272628,chr10:123272636,chr10:123272647,chr10:123272660,chr10:123272660,chr10:123272662,chr10:123272662,chr10:123272720,chr10:123272146,chr10:123272159,chr10:123272177,chr10:123272177,chr10:123273873,chr10:123272475,chr10:123272475,chr10:123272484,chr10:123272484,chr10:123272490,chr10:123278600,chr10:123280269,chr10:123280394,chr10:123288760,chr10:123288848,chr10:123288966,chr10:123288469,chr10:123289855,chr10:123289855,chr10:123289889,chr10:123289889,chr10:123289940,chr10:123288515,chr10:123289989,chr10:123290061,chr10:123290062,chr10:123290062,chr10:123290068,chr10:123288549,chr10:123288549,chr10:123288549,chr10:123288556,chr10:123288571,chr10:123288651,chr10:123288710,chr10:123288724,chr10:123288744,chr10:123288746,chr10:123288747,chr10:123292622,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293617,chr10:123293617,chr10:123293617,chr10:123293728,chr10:123293774,chr10:123293813,chr10:123293820,chr10:123293854,chr10:123293924,chr10:123293931,chr10:123280305,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123249295,chr10:123249804,chr10:123249890,chr10:123249676,chr10:123249672,chr10:123249669,chr10:123249687,chr10:123249667,chr10:123249676,chr10:123249678,chr10:123293876,chr10:123293865,chr10:123293663,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123251158,chr10:123251112,chr10:123251138,chr10:123272647,chr10:123272465,chr10:123272540,chr10:123272516,chr10:123272477,chr10:123272627,chr10:123256536,chr10:123256602,chr10:123251258,chr10:123251214,chr10:123289427,chr10:123288731,chr10:123289970,chr10:123289968,chr10:123288777,chr10:123288678,chr10:123249665,chr10:123274011,chr10:123241404,chr10:123246175,chr10:123245998,chr10:123278998,chr10:123278997,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123267100,chr10:123266831,chr10:123266918,chr10:123266917,chr10:123242475,chr10:123242494,chr10:123272659,chr10:123272636,chr10:123272647,chr10:123272638,chr10:123272645,chr10:123272642,chr10:123254414,chr10:123293728,chr10:123293701,chr10:123293727,chr10:123293717,chr10:123249773,chr10:123249892,chr10:123249902,chr10:123249870,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123249692,chr10:123249694,chr10:123249694,chr10:123249695,chr10:123249696,chr10:123249696,chr10:123249774,chr10:123249815,chr10:123249819,chr10:123249828,chr10:123249835,chr10:123249848,chr10:123249860,chr10:123249880 chr10:123571686,chr10:123656142,chr10:123571684,chr10:123571759,chr10:123571488,chr10:123656367,chr10:123571751,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123543564,chr10:123656141,chr10:123571659,chr10:123656171,chr10:123656141,chr10:123544223,chr10:123544197,chr10:123657164,chr10:123657170,chr10:123657239,chr10:123570234,chr10:123570003,chr10:123569985,chr10:123569933,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569924,chr10:123569927,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569933,chr10:123626171,chr10:123626255,chr10:123626204,chr10:123610373,chr10:123544229,chr10:123544175,chr10:123565769,chr10:123634461,chr10:123634463,chr10:123544138,chr10:123544175,chr10:123544176,chr10:123634463,chr10:123544133,chr10:123634281,chr10:123634415,chr10:123634460,chr10:123634404,chr10:123544139,chr10:123634287,chr10:123529990,chr10:123544235,chr10:123634525,chr10:123634462,chr10:123544171,chr10:123544208,chr10:123615905,chr10:123511989,chr10:123511983,chr10:123657242,chr10:123657293,chr10:123657289,chr10:123657305,chr10:123579067,chr10:123657196,chr10:123578974,chr10:123657098,chr10:123657312,chr10:123657256,chr10:123657195,chr10:123657265,chr10:123657256,chr10:123657265,chr10:123657266,chr10:123579026,chr10:123579038,chr10:123579044,chr10:123657298,chr10:123578985,chr10:123657305,chr10:123657314,chr10:123579026,chr10:123657257,chr10:123657265,chr10:123657265,chr10:123629635,chr10:123523268,chr10:123641598,chr10:123523270,chr10:123641611,chr10:123523295,chr10:123523292,chr10:123641455,chr10:123523295,chr10:123641611,chr10:123641454,chr10:123641426,chr10:123641455,chr10:123523519,chr10:123641575,chr10:123523480,chr10:123523284,chr10:123523291,chr10:123511893,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123518962,chr10:123519061,chr10:123519144,chr10:123519238,chr10:123519238,chr10:123519241,chr10:123519238,chr10:123519239,chr10:123519236,chr10:123519236,chr10:123523244,chr10:123523235,chr10:123523299,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123541791,chr10:123543497,chr10:123543891,chr10:123544070,chr10:123544138,chr10:123544178,chr10:123544238,chr10:123544283,chr10:123544403,chr10:123569902,chr10:123569967,chr10:123571563,chr10:123571760,chr10:123578735,chr10:123579025,chr10:123579050,chr10:123579001,chr10:123579044,chr10:123579125,chr10:123592817,chr10:123595070,chr10:123601180,chr10:123644553,chr10:123644766,chr10:123615552,chr10:123615574,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123626359,chr10:123626069,chr10:123626191,chr10:123626177,chr10:123630756,chr10:123630788,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634498,chr10:123634514,chr10:123637343,chr10:123641417,chr10:123641390,chr10:123641422,chr10:123641412,chr10:123643558,chr10:123643776,chr10:123643892,chr10:123643932,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123643641,chr10:123519259,chr10:123643647,chr10:123519259,chr10:123519253,chr10:123643635,chr10:123519033,chr10:123519133,chr10:123519143,chr10:123519145,chr10:123519152,chr10:123519133,chr10:123519112,chr10:123519088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(35%),Immunoglobulin_domain(100%)| I-set(70%),Ig_2(100%),Ig_3(85%),ig(90%)| 4 7 6 15742 164 ENST00000358487.10 ENST00000540606.7 upstream downstream duplicates(5),mismatches(1) AGATAAAGGGCGCCACGCCTAGAGACTCCGGCCTCTATGCTTGTACTGCCAGTAGGACTGTAGACAGTGAAACTTGGTACTTCATGGTGAATGTCACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGA...CTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG___GTACGAAACCAGCACTGGAGCCTCATTATGGAAAGTGTGGTCCCATCTGACAAGGGAAATTATACCTGTGTgGTGGAGAATGAATACGGGTCCATCAATCACACGTACCACCTGGATGTTGTGG|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTGCTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGAC...CTTTTAAAAAATATTTTGTGGCAATGTATCTGTGAGAATCTCATAGTTAATATAAAGATTTTAAAACTGCATTATGACCTAGCCCCCATAATTGGGATTTATCATTTTGGAGGATTCTTTCTAGAGCAAGATAtGCTCAAATTCTCCTGTTTGTATTTTGTAAAATGAAGAAGTGAATCTAAGTAACTTAATCACAGTTGTGCATTTTTTTTGGTTCTGTTAGAGA LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV|vDEDRSTEPDRLQVFHKRAIMPYGVYKKQQKDPSEEAAVLQYASLVGQKCSERMLLFRN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 TRUE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17927 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551290:- chr10:123237846-123357972:- chr10:123310804:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121841263:- chr10:123468907-123688316:- chr10:123600778:- chr10:121509058,chr10:121508817,chr10:121519086,chr10:121529246,chr10:121529334,chr10:121529452,chr10:121528955,chr10:121529001,chr10:121529042,chr10:121529137,chr10:121529196,chr10:121529230,chr10:121529232,chr10:121529233,chr10:121533108,chr10:121478351,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534103,chr10:121534103,chr10:121534214,chr10:121543253,chr10:121543309,chr10:121543309,chr10:121543311,chr10:121543338,chr10:121543419,chr10:121543449,chr10:121543449,chr10:121543470,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121543508,chr10:121481890,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482425,chr10:121519484,chr10:121519483,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121543356,chr10:121543338,chr10:121543325,chr10:121543346,chr10:121482961,chr10:121482980,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121494900,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121543394,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121486661,chr10:121486484,chr10:121490178,chr10:121490180,chr10:121490182,chr10:121491844,chr10:121491891,chr10:121491996,chr10:121492020,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495362,chr10:121495424 chr10:121866740,chr10:121866656,chr10:121856390,chr10:121897727,chr10:121897778,chr10:121897774,chr10:121897790,chr10:121897741,chr10:121897783,chr10:121897790,chr10:121897799,chr10:121897742,chr10:121897750,chr10:121897750,chr10:121870120,chr10:121850858,chr10:121882083,chr10:121882096,chr10:121881940,chr10:121882096,chr10:121881939,chr10:121881911,chr10:121866593,chr10:121866675,chr10:121866649,chr10:121893246,chr10:121866675,chr10:121866737,chr10:121866832,chr10:121893262,chr10:121893271,chr10:121893262,chr10:121893270,chr10:121866847,chr10:121893271,chr10:121841665,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121841550,chr10:121856037,chr10:121856059,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121866692,chr10:121866676,chr10:121866662,chr10:121866673,chr10:121871241,chr10:121871273,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121877828,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121893160,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121885038,chr10:121885251,chr10:121884126,chr10:121884132,chr10:121884120,chr10:121896627,chr10:121896852,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121896656,chr10:121896626,chr10:121897649,chr10:121897655,chr10:121897724 NA NA chr10:123268572,chr10:123268331,chr10:123278600,chr10:123288760,chr10:123288848,chr10:123288966,chr10:123288469,chr10:123288515,chr10:123288556,chr10:123288651,chr10:123288710,chr10:123288744,chr10:123288746,chr10:123288747,chr10:123292622,chr10:123237865,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293617,chr10:123293617,chr10:123293728,chr10:123302767,chr10:123302823,chr10:123302823,chr10:123302825,chr10:123302852,chr10:123302933,chr10:123302963,chr10:123302963,chr10:123302984,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123303022,chr10:123241404,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241939,chr10:123278998,chr10:123278997,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123302870,chr10:123302852,chr10:123302839,chr10:123302860,chr10:123242475,chr10:123242494,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123254414,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123302908,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123246175,chr10:123245998,chr10:123249692,chr10:123249694,chr10:123249696,chr10:123251358,chr10:123251405,chr10:123251510,chr10:123251534,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254876,chr10:123254938 chr10:123626255,chr10:123626171,chr10:123615905,chr10:123657242,chr10:123657293,chr10:123657289,chr10:123657305,chr10:123657256,chr10:123657298,chr10:123657305,chr10:123657314,chr10:123657257,chr10:123657265,chr10:123657265,chr10:123629635,chr10:123610373,chr10:123641598,chr10:123641611,chr10:123641455,chr10:123641611,chr10:123641454,chr10:123641426,chr10:123626108,chr10:123626190,chr10:123626164,chr10:123652761,chr10:123626190,chr10:123626252,chr10:123626347,chr10:123652777,chr10:123652786,chr10:123652777,chr10:123652785,chr10:123626362,chr10:123652786,chr10:123601180,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123601065,chr10:123615552,chr10:123615574,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123626207,chr10:123626191,chr10:123626177,chr10:123626188,chr10:123630756,chr10:123630788,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123637343,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123652675,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123644553,chr10:123644766,chr10:123643641,chr10:123643647,chr10:123643635,chr10:123656142,chr10:123656367,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123656171,chr10:123656141,chr10:123657164,chr10:123657170,chr10:123657239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)|Arginine-tRNA-protein_transferase__C_terminus(60%) I-set(1%),Ig_2(0%),Ig_3(1%),ig(0%)|ATE_C(45%) 1 2 7 12899 107 ENST00000358487.10 ENST00000540606.7 upstream downstream mismatches(2) TGAATGTCACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA___GAGCACCATACTGGACCAACACAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGGGGAACCCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG|GCAGAGACTCCCCCTAATGGGCCAGATTGTGGCTATGGCTCCTTTCACCAGCAGTACTGGCTTGACGGAAAGATCATTGCTGTGGGGGTGATTGACATCCTCCCAAACTGTGTATCATCTGTGTATTTGTACTACGATCCTGATTATTCGTTTTTGTCTTTGGGCGTCTACTCTGCACTACG___AGAAATTGCTTTTAC NVTDAISSGDDEDDTDGAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK|AETPPNGPDCGYGSFHQQYWLDGKIIAVGVIDILPNCVSSVYLYYDPDYSFLSLGVYSALREIAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17928 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121487354:- chr10:123237846-123357972:- chr10:123246868:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr10:121481890,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121482961,chr10:121482980,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121478351,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121486661,chr10:121486484 chr10:121841665,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121871241,chr10:121871273,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121850858,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121885038,chr10:121885251 NA NA chr10:123241404,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123242475,chr10:123242494,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123237865,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123246175,chr10:123245998 chr10:123601180,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123630756,chr10:123630788,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123610373,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123644553,chr10:123644766 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(73%)| I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(64%),Pkinase(78%),ig(100%)| 0 1 8 10866 164 ENST00000613048.4 ENST00000540606.7 upstream downstream duplicates(3),mismatches(1) AAAAAGACCACCAAT___GGGCGGCTTCCAGTCAAGTGGATGGCTCCAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGT|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTGCTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGAC KKTTNGRLPVKWMAPEALFDRVYTHQSDv|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17929 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121496532:- chr10:123237846-123357972:- chr10:123256046:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491996,chr10:121492020,chr10:121492031,chr10:121491635,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121489781,chr10:121490290,chr10:121490376,chr10:121490162,chr10:121490158,chr10:121490155,chr10:121490173,chr10:121490153,chr10:121490162,chr10:121490164,chr10:121491644,chr10:121491598,chr10:121491624,chr10:121478351,chr10:121491744,chr10:121491700,chr10:121490151,chr10:121481890,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121482961,chr10:121482980,chr10:121494900,chr10:121490259,chr10:121490378,chr10:121490388,chr10:121490356,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121486661,chr10:121486484,chr10:121490178,chr10:121490180,chr10:121490180,chr10:121490181,chr10:121490182,chr10:121490182,chr10:121490260,chr10:121490301,chr10:121490305,chr10:121490314,chr10:121490321,chr10:121490334,chr10:121490346,chr10:121490366 chr10:121812171,chr10:121896627,chr10:121812169,chr10:121812244,chr10:121811973,chr10:121896852,chr10:121812236,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121784049,chr10:121896626,chr10:121812144,chr10:121896656,chr10:121896626,chr10:121897649,chr10:121897655,chr10:121897724,chr10:121759447,chr10:121759546,chr10:121759629,chr10:121759723,chr10:121759723,chr10:121759726,chr10:121759723,chr10:121759724,chr10:121759721,chr10:121759721,chr10:121782276,chr10:121783982,chr10:121784376,chr10:121850858,chr10:121812048,chr10:121812245,chr10:121833302,chr10:121841665,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121871241,chr10:121871273,chr10:121877828,chr10:121884043,chr10:121884261,chr10:121884377,chr10:121884417,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121885038,chr10:121885251,chr10:121884126,chr10:121759744,chr10:121884132,chr10:121759744,chr10:121759738,chr10:121884120,chr10:121759518,chr10:121759618,chr10:121759628,chr10:121759630,chr10:121759637,chr10:121759618,chr10:121759597,chr10:121759573 NA NA chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251510,chr10:123251534,chr10:123251545,chr10:123251149,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123249295,chr10:123249804,chr10:123249890,chr10:123249676,chr10:123249672,chr10:123249669,chr10:123249687,chr10:123249667,chr10:123249676,chr10:123249678,chr10:123251158,chr10:123251112,chr10:123251138,chr10:123237865,chr10:123251258,chr10:123251214,chr10:123249665,chr10:123241404,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123242475,chr10:123242494,chr10:123254414,chr10:123249773,chr10:123249892,chr10:123249902,chr10:123249870,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123246175,chr10:123245998,chr10:123249692,chr10:123249694,chr10:123249694,chr10:123249695,chr10:123249696,chr10:123249696,chr10:123249774,chr10:123249815,chr10:123249819,chr10:123249828,chr10:123249835,chr10:123249848,chr10:123249860,chr10:123249880 chr10:123571686,chr10:123656142,chr10:123571684,chr10:123571759,chr10:123571488,chr10:123656367,chr10:123571751,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123543564,chr10:123656141,chr10:123571659,chr10:123656171,chr10:123656141,chr10:123657164,chr10:123657170,chr10:123657239,chr10:123518962,chr10:123519061,chr10:123519144,chr10:123519238,chr10:123519238,chr10:123519241,chr10:123519238,chr10:123519239,chr10:123519236,chr10:123519236,chr10:123541791,chr10:123543497,chr10:123543891,chr10:123610373,chr10:123571563,chr10:123571760,chr10:123592817,chr10:123601180,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123630756,chr10:123630788,chr10:123637343,chr10:123643558,chr10:123643776,chr10:123643892,chr10:123643932,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123644553,chr10:123644766,chr10:123643641,chr10:123519259,chr10:123643647,chr10:123519259,chr10:123519253,chr10:123643635,chr10:123519033,chr10:123519133,chr10:123519143,chr10:123519145,chr10:123519152,chr10:123519133,chr10:123519112,chr10:123519088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(50%)| I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(21%),Pkinase(25%),ig(100%)| 0 1 7 13909 164 ENST00000613048.4 ENST00000693486.1 upstream downstream duplicates(3),mismatches(1) GGAGTACTTGGCTTCCCAAAAA|TGcATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTGCTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGAC EYLASQK|cMRIAVRNLTDCRCFTREPSCLTVFIRNSRKTQVRRLLFCSTPAWWGRSAPSGCCCSETDLFTSAGKFLCCADDLCQDTYSVPVGK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17930 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121515123:- chr10:123237846-123357972:- chr10:123274637:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491996,chr10:121492020,chr10:121492031,chr10:121491635,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495336,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121497147,chr10:121496849,chr10:121496854,chr10:121497024,chr10:121497029,chr10:121497032,chr10:121497037,chr10:121497039,chr10:121497040,chr10:121497046,chr10:121497046,chr10:121497051,chr10:121497052,chr10:121508817,chr10:121509058,chr10:121507440,chr10:121478351,chr10:121513017,chr10:121513018,chr10:121513018,chr10:121513105,chr10:121513114,chr10:121513122,chr10:121513133,chr10:121513146,chr10:121513146,chr10:121513148,chr10:121513148,chr10:121513206,chr10:121512632,chr10:121512645,chr10:121512663,chr10:121512663,chr10:121514359,chr10:121512961,chr10:121512961,chr10:121512970,chr10:121512970,chr10:121512976,chr10:121489781,chr10:121490290,chr10:121490376,chr10:121490162,chr10:121490158,chr10:121490155,chr10:121490173,chr10:121490153,chr10:121490162,chr10:121490164,chr10:121491644,chr10:121491598,chr10:121491624,chr10:121513133,chr10:121512951,chr10:121513026,chr10:121513002,chr10:121512963,chr10:121513113,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121497022,chr10:121497088,chr10:121491744,chr10:121491700,chr10:121490151,chr10:121514497,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121481890,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121507586,chr10:121507317,chr10:121507404,chr10:121507403,chr10:121482961,chr10:121482980,chr10:121513145,chr10:121513122,chr10:121513133,chr10:121513124,chr10:121513131,chr10:121513128,chr10:121494900,chr10:121490259,chr10:121490378,chr10:121490388,chr10:121490356,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121486661,chr10:121486484,chr10:121490178,chr10:121490180,chr10:121490180,chr10:121490181,chr10:121490182,chr10:121490182,chr10:121490260,chr10:121490301,chr10:121490305,chr10:121490314,chr10:121490321,chr10:121490334,chr10:121490346,chr10:121490366 chr10:121812171,chr10:121896627,chr10:121812169,chr10:121812244,chr10:121811973,chr10:121896852,chr10:121812236,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121784049,chr10:121896626,chr10:121812144,chr10:121896656,chr10:121896626,chr10:121784708,chr10:121784682,chr10:121897649,chr10:121897655,chr10:121897724,chr10:121810719,chr10:121810488,chr10:121810470,chr10:121810418,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810409,chr10:121810412,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810418,chr10:121866656,chr10:121866740,chr10:121866689,chr10:121850858,chr10:121784714,chr10:121784660,chr10:121806254,chr10:121874946,chr10:121874948,chr10:121784623,chr10:121784660,chr10:121784661,chr10:121874948,chr10:121784618,chr10:121874766,chr10:121874900,chr10:121874945,chr10:121874889,chr10:121784624,chr10:121874772,chr10:121770475,chr10:121784720,chr10:121875010,chr10:121874947,chr10:121784656,chr10:121784693,chr10:121759447,chr10:121759546,chr10:121759629,chr10:121759723,chr10:121759723,chr10:121759726,chr10:121759723,chr10:121759724,chr10:121759721,chr10:121759721,chr10:121782276,chr10:121783982,chr10:121784376,chr10:121784555,chr10:121784623,chr10:121784663,chr10:121784723,chr10:121784768,chr10:121784888,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121810387,chr10:121810452,chr10:121812048,chr10:121812245,chr10:121833302,chr10:121835555,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121841665,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121866844,chr10:121866554,chr10:121866676,chr10:121866662,chr10:121871241,chr10:121871273,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874983,chr10:121874999,chr10:121877828,chr10:121884043,chr10:121884261,chr10:121884377,chr10:121884417,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121885038,chr10:121885251,chr10:121884126,chr10:121759744,chr10:121884132,chr10:121759744,chr10:121759738,chr10:121884120,chr10:121759518,chr10:121759618,chr10:121759628,chr10:121759630,chr10:121759637,chr10:121759618,chr10:121759597,chr10:121759573 NA NA chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251510,chr10:123251534,chr10:123251545,chr10:123251149,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254850,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123256661,chr10:123256363,chr10:123256368,chr10:123256538,chr10:123256543,chr10:123256546,chr10:123256551,chr10:123256553,chr10:123256554,chr10:123256560,chr10:123256560,chr10:123256565,chr10:123256566,chr10:123268331,chr10:123268572,chr10:123266954,chr10:123237865,chr10:123272531,chr10:123272532,chr10:123272532,chr10:123272619,chr10:123272628,chr10:123272636,chr10:123272647,chr10:123272660,chr10:123272660,chr10:123272662,chr10:123272662,chr10:123272720,chr10:123272146,chr10:123272159,chr10:123272177,chr10:123272177,chr10:123273873,chr10:123272475,chr10:123272475,chr10:123272484,chr10:123272484,chr10:123272490,chr10:123249295,chr10:123249804,chr10:123249890,chr10:123249676,chr10:123249672,chr10:123249669,chr10:123249687,chr10:123249667,chr10:123249676,chr10:123249678,chr10:123251158,chr10:123251112,chr10:123251138,chr10:123272647,chr10:123272465,chr10:123272540,chr10:123272516,chr10:123272477,chr10:123272627,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123256536,chr10:123256602,chr10:123251258,chr10:123251214,chr10:123249665,chr10:123274011,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123241404,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123267100,chr10:123266831,chr10:123266918,chr10:123266917,chr10:123242475,chr10:123242494,chr10:123272659,chr10:123272636,chr10:123272647,chr10:123272638,chr10:123272645,chr10:123272642,chr10:123254414,chr10:123249773,chr10:123249892,chr10:123249902,chr10:123249870,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123246175,chr10:123245998,chr10:123249692,chr10:123249694,chr10:123249694,chr10:123249695,chr10:123249696,chr10:123249696,chr10:123249774,chr10:123249815,chr10:123249819,chr10:123249828,chr10:123249835,chr10:123249848,chr10:123249860,chr10:123249880 chr10:123571686,chr10:123656142,chr10:123571684,chr10:123571759,chr10:123571488,chr10:123656367,chr10:123571751,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123543564,chr10:123656141,chr10:123571659,chr10:123656171,chr10:123656141,chr10:123544223,chr10:123544197,chr10:123657164,chr10:123657170,chr10:123657239,chr10:123570234,chr10:123570003,chr10:123569985,chr10:123569933,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569924,chr10:123569927,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569933,chr10:123626171,chr10:123626255,chr10:123626204,chr10:123610373,chr10:123544229,chr10:123544175,chr10:123565769,chr10:123634461,chr10:123634463,chr10:123544138,chr10:123544175,chr10:123544176,chr10:123634463,chr10:123544133,chr10:123634281,chr10:123634415,chr10:123634460,chr10:123634404,chr10:123544139,chr10:123634287,chr10:123529990,chr10:123544235,chr10:123634525,chr10:123634462,chr10:123544171,chr10:123544208,chr10:123518962,chr10:123519061,chr10:123519144,chr10:123519238,chr10:123519238,chr10:123519241,chr10:123519238,chr10:123519239,chr10:123519236,chr10:123519236,chr10:123541791,chr10:123543497,chr10:123543891,chr10:123544070,chr10:123544138,chr10:123544178,chr10:123544238,chr10:123544283,chr10:123544403,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123569902,chr10:123569967,chr10:123571563,chr10:123571760,chr10:123592817,chr10:123595070,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123601180,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123626359,chr10:123626069,chr10:123626191,chr10:123626177,chr10:123630756,chr10:123630788,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634498,chr10:123634514,chr10:123637343,chr10:123643558,chr10:123643776,chr10:123643892,chr10:123643932,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123644553,chr10:123644766,chr10:123643641,chr10:123519259,chr10:123643647,chr10:123519259,chr10:123519253,chr10:123643635,chr10:123519033,chr10:123519133,chr10:123519143,chr10:123519145,chr10:123519152,chr10:123519133,chr10:123519112,chr10:123519088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%)| 1 1 6 15510 164 ENST00000457416.7 ENST00000693486.1 upstream downstream duplicates(2),mismatches(1) CAGCCCCACATCCAGTGGATCAAGCACGTGGAAAAGAACGGCAGTAAATACGGGCCCGACGGGCTGCCCTACCTCAAGGTTCTCAAG___CACTCGGGGATAAA...CACGACCAAGAAGCaAGACTTCAGCAGCCAGCCGGCTGTGCACAAGCTGACCAAACGTATCCCCCTGCGGAGACAG|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTGCTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGAC TTKKqDFSSQPAVHKLTKRIPLRRQ|WMRIAVRNLTDCRCFTREPSCLTVFIRNSRKTQVRRLLFCSTPAWWGRSAPSGCCCSETDLFTSAGKFLCCADDLCQDTYSVPVGK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17931 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121503790:- chr10:123237846-123357972:- chr10:123263304:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121790289:- chr10:123468907-123688316:- chr10:123549804:- chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491996,chr10:121492020,chr10:121492031,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121497147,chr10:121496849,chr10:121496854,chr10:121497024,chr10:121497029,chr10:121497032,chr10:121497037,chr10:121497039,chr10:121497040,chr10:121497046,chr10:121497046,chr10:121497051,chr10:121497052,chr10:121497022,chr10:121497088,chr10:121478351,chr10:121491744,chr10:121491700,chr10:121490151,chr10:121481890,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121482961,chr10:121482980,chr10:121494900,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121486661,chr10:121486484,chr10:121490178,chr10:121490180,chr10:121490182 chr10:121812171,chr10:121896627,chr10:121812169,chr10:121812244,chr10:121811973,chr10:121896852,chr10:121812236,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121896626,chr10:121812144,chr10:121896656,chr10:121896626,chr10:121897649,chr10:121897655,chr10:121897724,chr10:121810719,chr10:121810488,chr10:121810470,chr10:121810418,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810409,chr10:121810412,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810418,chr10:121810387,chr10:121810452,chr10:121850858,chr10:121812048,chr10:121812245,chr10:121833302,chr10:121841665,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121871241,chr10:121871273,chr10:121877828,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121897835,chr10:121897840,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121885038,chr10:121885251,chr10:121884126,chr10:121884132,chr10:121884120 NA NA chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251510,chr10:123251534,chr10:123251545,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123256661,chr10:123256363,chr10:123256368,chr10:123256538,chr10:123256543,chr10:123256546,chr10:123256551,chr10:123256553,chr10:123256554,chr10:123256560,chr10:123256560,chr10:123256565,chr10:123256566,chr10:123256536,chr10:123256602,chr10:123237865,chr10:123251258,chr10:123251214,chr10:123249665,chr10:123241404,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123242475,chr10:123242494,chr10:123254414,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123246175,chr10:123245998,chr10:123249692,chr10:123249694,chr10:123249696 chr10:123571686,chr10:123656142,chr10:123571684,chr10:123571759,chr10:123571488,chr10:123656367,chr10:123571751,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123656141,chr10:123571659,chr10:123656171,chr10:123656141,chr10:123657164,chr10:123657170,chr10:123657239,chr10:123570234,chr10:123570003,chr10:123569985,chr10:123569933,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569924,chr10:123569927,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569933,chr10:123569902,chr10:123569967,chr10:123610373,chr10:123571563,chr10:123571760,chr10:123592817,chr10:123601180,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123630756,chr10:123630788,chr10:123637343,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123657350,chr10:123657355,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123644553,chr10:123644766,chr10:123643641,chr10:123643647,chr10:123643635 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%)|Arginine-tRNA-protein_transferase__C_terminus(5%) I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%)|ATE_C(0%) 0 1 6 14541 125 ENST00000613048.4 ENST00000693486.1 upstream downstream duplicates(2),mismatches(3) ACACGCCTCTCTTCAACGGCAGACACCCCCATGCTGGCAGGGGTCTCCGAGTATGAACTTCCAGAGGACCCAAAATGGGAGTTTCCAAGAGATAA|GGTCAGTATAGACCTTCTGATTTGCTGTGCCCTGAaACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAACCAGGACCCAGAAGCAG...GTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGGGAAATAACTGTCACCACCCACAAATTAGACATTTTTTATTTTGACTATCTATG TRLSSTADTPMLAGVSEYELPEDPKWEFPRDk|VSIDLLICCALkHMFGYPLSNACLHLKTPSTAVSTRTQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17932 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551290:- chr10:123237846-123357972:- chr10:123310804:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr10:121543394,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491884,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491947,chr10:121491996,chr10:121491996,chr10:121492020,chr10:121492020,chr10:121492020,chr10:121492031,chr10:121491635,chr10:121491708,chr10:121491713,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121491730,chr10:121495336,chr10:121495336,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121495445,chr10:121497147,chr10:121496849,chr10:121496854,chr10:121497024,chr10:121497029,chr10:121497032,chr10:121497037,chr10:121497039,chr10:121497040,chr10:121497046,chr10:121497046,chr10:121497051,chr10:121497052,chr10:121507958,chr10:121508817,chr10:121509058,chr10:121507440,chr10:121478351,chr10:121513017,chr10:121513018,chr10:121513018,chr10:121513105,chr10:121513114,chr10:121513133,chr10:121513146,chr10:121513146,chr10:121513148,chr10:121513206,chr10:121512632,chr10:121512645,chr10:121512663,chr10:121514359,chr10:121512961,chr10:121512961,chr10:121512970,chr10:121512970,chr10:121512976,chr10:121519086,chr10:121520755,chr10:121520880,chr10:121529246,chr10:121529334,chr10:121529452,chr10:121528955,chr10:121530341,chr10:121530341,chr10:121530375,chr10:121530375,chr10:121530426,chr10:121529001,chr10:121530475,chr10:121530547,chr10:121530548,chr10:121530548,chr10:121530554,chr10:121529035,chr10:121529035,chr10:121529035,chr10:121529042,chr10:121529057,chr10:121529137,chr10:121529196,chr10:121529210,chr10:121529230,chr10:121529232,chr10:121529233,chr10:121533108,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534103,chr10:121534103,chr10:121534103,chr10:121534214,chr10:121534260,chr10:121534299,chr10:121534306,chr10:121534340,chr10:121534410,chr10:121534417,chr10:121543253,chr10:121543309,chr10:121543309,chr10:121543311,chr10:121543338,chr10:121543419,chr10:121543449,chr10:121543449,chr10:121543470,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121543508,chr10:121547131,chr10:121547415,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121520791,chr10:121489781,chr10:121490290,chr10:121490376,chr10:121490162,chr10:121490158,chr10:121490155,chr10:121490173,chr10:121490153,chr10:121490162,chr10:121490164,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121534362,chr10:121534351,chr10:121534149,chr10:121547642,chr10:121491644,chr10:121513002,chr10:121512963,chr10:121491882,chr10:121541457,chr10:121491906,chr10:121513113,chr10:121491598,chr10:121513128,chr10:121491624,chr10:121491962,chr10:121491907,chr10:121513133,chr10:121491907,chr10:121512951,chr10:121513026,chr10:121497022,chr10:121497088,chr10:121491744,chr10:121491700,chr10:121486661,chr10:121486484,chr10:121529913,chr10:121529217,chr10:121530456,chr10:121530454,chr10:121529263,chr10:121529164,chr10:121490151,chr10:121514497,chr10:121481890,chr10:121519484,chr10:121519483,chr10:121482031,chr10:121481944,chr10:121482020,chr10:121482020,chr10:121507586,chr10:121507317,chr10:121543356,chr10:121507404,chr10:121543338,chr10:121507403,chr10:121543325,chr10:121543346,chr10:121482961,chr10:121482980,chr10:121513145,chr10:121513122,chr10:121513133,chr10:121513124,chr10:121513131,chr10:121513128,chr10:121494900,chr10:121534214,chr10:121534187,chr10:121534213,chr10:121534203,chr10:121490259,chr10:121490378,chr10:121490388,chr10:121490356,chr10:121486619,chr10:121486609,chr10:121486542,chr10:121486605,chr10:121486539,chr10:121486544,chr10:121486663,chr10:121486484,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121490178,chr10:121490180,chr10:121490180,chr10:121490181,chr10:121490182,chr10:121490182,chr10:121490260,chr10:121490301,chr10:121490305,chr10:121490309,chr10:121490314,chr10:121490321,chr10:121490334,chr10:121490346,chr10:121490366 chr10:121893160,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121896627,chr10:121812171,chr10:121812169,chr10:121784876,chr10:121812244,chr10:121896852,chr10:121811973,chr10:121812236,chr10:121785183,chr10:121896628,chr10:121784678,chr10:121896655,chr10:121784705,chr10:121784703,chr10:121896626,chr10:121784049,chr10:121784700,chr10:121896626,chr10:121784676,chr10:121896656,chr10:121784706,chr10:121812144,chr10:121896626,chr10:121784703,chr10:121784708,chr10:121897649,chr10:121784682,chr10:121897655,chr10:121897724,chr10:121783997,chr10:121810719,chr10:121810488,chr10:121810470,chr10:121810418,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810409,chr10:121810412,chr10:121810412,chr10:121810418,chr10:121810418,chr10:121810418,chr10:121758155,chr10:121866656,chr10:121866740,chr10:121866689,chr10:121850858,chr10:121784714,chr10:121784660,chr10:121806254,chr10:121874946,chr10:121874948,chr10:121784660,chr10:121784661,chr10:121874948,chr10:121874766,chr10:121874900,chr10:121874945,chr10:121874889,chr10:121874772,chr10:121770475,chr10:121784720,chr10:121875010,chr10:121874947,chr10:121784656,chr10:121784693,chr10:121856390,chr10:121752474,chr10:121752468,chr10:121897727,chr10:121897778,chr10:121897774,chr10:121897790,chr10:121819552,chr10:121897681,chr10:121897583,chr10:121819459,chr10:121897797,chr10:121897741,chr10:121897680,chr10:121897750,chr10:121897741,chr10:121897750,chr10:121897751,chr10:121819511,chr10:121819523,chr10:121819529,chr10:121897783,chr10:121819470,chr10:121897790,chr10:121897799,chr10:121819511,chr10:121897742,chr10:121897750,chr10:121897750,chr10:121870120,chr10:121763753,chr10:121882083,chr10:121763755,chr10:121882096,chr10:121763780,chr10:121763777,chr10:121881940,chr10:121763780,chr10:121882096,chr10:121881939,chr10:121881911,chr10:121881940,chr10:121764004,chr10:121882060,chr10:121763965,chr10:121763769,chr10:121763776,chr10:121866593,chr10:121866675,chr10:121866649,chr10:121893246,chr10:121866675,chr10:121866737,chr10:121893262,chr10:121866832,chr10:121893271,chr10:121893262,chr10:121893270,chr10:121893271,chr10:121866847,chr10:121759111,chr10:121799450,chr10:121897835,chr10:121897840,chr10:121897775,chr10:121888345,chr10:121863485,chr10:121863487,chr10:121897738,chr10:121863874,chr10:121888306,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121897656,chr10:121863455,chr10:121897668,chr10:121863462,chr10:121888254,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121803481,chr10:121841550,chr10:121752378,chr10:121759447,chr10:121759546,chr10:121759629,chr10:121759723,chr10:121759723,chr10:121759726,chr10:121759723,chr10:121759724,chr10:121759721,chr10:121759721,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121763729,chr10:121763720,chr10:121763784,chr10:121778783,chr10:121782276,chr10:121784723,chr10:121784768,chr10:121784875,chr10:121784875,chr10:121784888,chr10:121784888,chr10:121783982,chr10:121783982,chr10:121784376,chr10:121784596,chr10:121784555,chr10:121784555,chr10:121784585,chr10:121784623,chr10:121784663,chr10:121810387,chr10:121810452,chr10:121812048,chr10:121812245,chr10:121885038,chr10:121885251,chr10:121819220,chr10:121819510,chr10:121819535,chr10:121819486,chr10:121819529,chr10:121819610,chr10:121833302,chr10:121835555,chr10:121841665,chr10:121856037,chr10:121856059,chr10:121863471,chr10:121863391,chr10:121863790,chr10:121863767,chr10:121866844,chr10:121866554,chr10:121866692,chr10:121866676,chr10:121866676,chr10:121866662,chr10:121866662,chr10:121866673,chr10:121871241,chr10:121871273,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874992,chr10:121874983,chr10:121874999,chr10:121877828,chr10:121881902,chr10:121881875,chr10:121881907,chr10:121881897,chr10:121884043,chr10:121884261,chr10:121884377,chr10:121884417,chr10:121885076,chr10:121885067,chr10:121885343,chr10:121885374,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885537,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121884126,chr10:121759744,chr10:121884132,chr10:121759744,chr10:121759738,chr10:121884120,chr10:121759518,chr10:121759618,chr10:121759628,chr10:121883994,chr10:121759630,chr10:121759637,chr10:121759618,chr10:121759597,chr10:121759573 NA NA chr10:123302908,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251398,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251461,chr10:123251510,chr10:123251510,chr10:123251534,chr10:123251534,chr10:123251534,chr10:123251545,chr10:123251149,chr10:123251222,chr10:123251227,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123251244,chr10:123254850,chr10:123254850,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123254959,chr10:123256661,chr10:123256363,chr10:123256368,chr10:123256538,chr10:123256543,chr10:123256546,chr10:123256551,chr10:123256553,chr10:123256554,chr10:123256560,chr10:123256560,chr10:123256565,chr10:123256566,chr10:123267472,chr10:123268331,chr10:123268572,chr10:123266954,chr10:123237865,chr10:123272531,chr10:123272532,chr10:123272532,chr10:123272619,chr10:123272628,chr10:123272647,chr10:123272660,chr10:123272660,chr10:123272662,chr10:123272720,chr10:123272146,chr10:123272159,chr10:123272177,chr10:123273873,chr10:123272475,chr10:123272475,chr10:123272484,chr10:123272484,chr10:123272490,chr10:123278600,chr10:123280269,chr10:123280394,chr10:123288760,chr10:123288848,chr10:123288966,chr10:123288469,chr10:123289855,chr10:123289855,chr10:123289889,chr10:123289889,chr10:123289940,chr10:123288515,chr10:123289989,chr10:123290061,chr10:123290062,chr10:123290062,chr10:123290068,chr10:123288549,chr10:123288549,chr10:123288549,chr10:123288556,chr10:123288571,chr10:123288651,chr10:123288710,chr10:123288724,chr10:123288744,chr10:123288746,chr10:123288747,chr10:123292622,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293617,chr10:123293617,chr10:123293617,chr10:123293728,chr10:123293774,chr10:123293813,chr10:123293820,chr10:123293854,chr10:123293924,chr10:123293931,chr10:123302767,chr10:123302823,chr10:123302823,chr10:123302825,chr10:123302852,chr10:123302933,chr10:123302963,chr10:123302963,chr10:123302984,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123303022,chr10:123306645,chr10:123306929,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123280305,chr10:123249295,chr10:123249804,chr10:123249890,chr10:123249676,chr10:123249672,chr10:123249669,chr10:123249687,chr10:123249667,chr10:123249676,chr10:123249678,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123293876,chr10:123293865,chr10:123293663,chr10:123307156,chr10:123251158,chr10:123272516,chr10:123272477,chr10:123251396,chr10:123300971,chr10:123251420,chr10:123272627,chr10:123251112,chr10:123272642,chr10:123251138,chr10:123251476,chr10:123251421,chr10:123272647,chr10:123251421,chr10:123272465,chr10:123272540,chr10:123256536,chr10:123256602,chr10:123251258,chr10:123251214,chr10:123246175,chr10:123245998,chr10:123289427,chr10:123288731,chr10:123289970,chr10:123289968,chr10:123288777,chr10:123288678,chr10:123249665,chr10:123274011,chr10:123241404,chr10:123278998,chr10:123278997,chr10:123241545,chr10:123241458,chr10:123241534,chr10:123241534,chr10:123267100,chr10:123266831,chr10:123302870,chr10:123266918,chr10:123302852,chr10:123266917,chr10:123302839,chr10:123302860,chr10:123242475,chr10:123242494,chr10:123272659,chr10:123272636,chr10:123272647,chr10:123272638,chr10:123272645,chr10:123272642,chr10:123254414,chr10:123293728,chr10:123293701,chr10:123293727,chr10:123293717,chr10:123249773,chr10:123249892,chr10:123249902,chr10:123249870,chr10:123246133,chr10:123246123,chr10:123246056,chr10:123246119,chr10:123246053,chr10:123246058,chr10:123246177,chr10:123245998,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123249692,chr10:123249694,chr10:123249694,chr10:123249695,chr10:123249696,chr10:123249696,chr10:123249774,chr10:123249815,chr10:123249819,chr10:123249823,chr10:123249828,chr10:123249835,chr10:123249848,chr10:123249860,chr10:123249880 chr10:123652675,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123656142,chr10:123571686,chr10:123571684,chr10:123544391,chr10:123571759,chr10:123656367,chr10:123571488,chr10:123571751,chr10:123544698,chr10:123656143,chr10:123544193,chr10:123656170,chr10:123544220,chr10:123544218,chr10:123656141,chr10:123543564,chr10:123544215,chr10:123656141,chr10:123544191,chr10:123656171,chr10:123544221,chr10:123571659,chr10:123656141,chr10:123544218,chr10:123544223,chr10:123657164,chr10:123544197,chr10:123657170,chr10:123657239,chr10:123543512,chr10:123570234,chr10:123570003,chr10:123569985,chr10:123569933,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569924,chr10:123569927,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569933,chr10:123517670,chr10:123626171,chr10:123626255,chr10:123626204,chr10:123610373,chr10:123544229,chr10:123544175,chr10:123565769,chr10:123634461,chr10:123634463,chr10:123544175,chr10:123544176,chr10:123634463,chr10:123634281,chr10:123634415,chr10:123634460,chr10:123634404,chr10:123634287,chr10:123529990,chr10:123544235,chr10:123634525,chr10:123634462,chr10:123544171,chr10:123544208,chr10:123615905,chr10:123511989,chr10:123511983,chr10:123657242,chr10:123657293,chr10:123657289,chr10:123657305,chr10:123579067,chr10:123657196,chr10:123657098,chr10:123578974,chr10:123657312,chr10:123657256,chr10:123657195,chr10:123657265,chr10:123657256,chr10:123657265,chr10:123657266,chr10:123579026,chr10:123579038,chr10:123579044,chr10:123657298,chr10:123578985,chr10:123657305,chr10:123657314,chr10:123579026,chr10:123657257,chr10:123657265,chr10:123657265,chr10:123629635,chr10:123523268,chr10:123641598,chr10:123523270,chr10:123641611,chr10:123523295,chr10:123523292,chr10:123641455,chr10:123523295,chr10:123641611,chr10:123641454,chr10:123641426,chr10:123641455,chr10:123523519,chr10:123641575,chr10:123523480,chr10:123523284,chr10:123523291,chr10:123626108,chr10:123626190,chr10:123626164,chr10:123652761,chr10:123626190,chr10:123626252,chr10:123652777,chr10:123626347,chr10:123652786,chr10:123652777,chr10:123652785,chr10:123652786,chr10:123626362,chr10:123518626,chr10:123558965,chr10:123657350,chr10:123657355,chr10:123657290,chr10:123647860,chr10:123623000,chr10:123623002,chr10:123657253,chr10:123623389,chr10:123647821,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123657171,chr10:123622970,chr10:123657183,chr10:123622977,chr10:123647769,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123511893,chr10:123518962,chr10:123519061,chr10:123519144,chr10:123519238,chr10:123519238,chr10:123519241,chr10:123519238,chr10:123519239,chr10:123519236,chr10:123519236,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123523244,chr10:123523235,chr10:123523299,chr10:123538298,chr10:123541791,chr10:123544238,chr10:123544283,chr10:123544390,chr10:123544390,chr10:123544403,chr10:123544403,chr10:123543497,chr10:123543497,chr10:123543891,chr10:123544111,chr10:123544070,chr10:123544070,chr10:123544100,chr10:123544138,chr10:123544178,chr10:123569902,chr10:123569967,chr10:123571563,chr10:123571760,chr10:123644553,chr10:123644766,chr10:123578735,chr10:123579025,chr10:123579050,chr10:123579001,chr10:123579044,chr10:123579125,chr10:123592817,chr10:123595070,chr10:123601180,chr10:123615552,chr10:123615574,chr10:123622986,chr10:123622906,chr10:123623305,chr10:123623282,chr10:123626359,chr10:123626069,chr10:123626207,chr10:123626191,chr10:123626191,chr10:123626177,chr10:123626177,chr10:123626188,chr10:123630756,chr10:123630788,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634507,chr10:123634498,chr10:123634514,chr10:123637343,chr10:123641417,chr10:123641390,chr10:123641422,chr10:123641412,chr10:123643558,chr10:123643776,chr10:123643892,chr10:123643932,chr10:123644591,chr10:123644582,chr10:123644858,chr10:123644889,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123645052,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123643641,chr10:123519259,chr10:123643647,chr10:123519259,chr10:123519253,chr10:123643635,chr10:123519033,chr10:123519133,chr10:123519143,chr10:123643509,chr10:123519145,chr10:123519152,chr10:123519133,chr10:123519112,chr10:123519088 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)| I-set(1%),Ig_2(0%),Ig_3(1%),ig(0%)| 0 2 4 12899 164 ENST00000358487.10 ENST00000693486.1 upstream downstream mismatches(1) CACAG___ATGCCATCTCATCCGGAGATGATGAGGATGACACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA___GAGCACCATACTGGACCAACACAGAAAAGATGGAAAAGaGGCTCCATG...CCAATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAGCCTGGTGGGGCAGAAGTGCTCCGAGCGGATGCTGCTGTTCAGAAACTGACCTGTTCACCTCTGCCGGGAAGTTCCTGTGTTGTGCTGATGATTTGTGCCAGGATACATATTCAGTACCTGTGGG PMPTMRWLKNGKEFKQEHRIGGYK|WMRIAVRNLTDCRCFTREPSCLTVFIRNSRKTQVRRLLFCSTPAWWGRSAPSGCCCSETDLFTSAGKFLCCADDLCQDTYSVPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17933 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121790289:- chr10:123468907-123688316:- chr10:123549804:- chr10:121494900,chr10:121486663,chr10:121486532,chr10:121571832,chr10:121486619,chr10:121486609,chr10:121571734,chr10:121486542,chr10:121571935,chr10:121572466,chr10:121486605,chr10:121571849,chr10:121486539,chr10:121486544,chr10:121571729,chr10:121486663,chr10:121572580,chr10:121486484,chr10:121571941,chr10:121571822,chr10:121486605,chr10:121486605,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121491844,chr10:121491844,chr10:121491847,chr10:121491887,chr10:121491891,chr10:121491891,chr10:121491912,chr10:121491996,chr10:121492020,chr10:121492031,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121491715,chr10:121543394,chr10:121558714,chr10:121558808,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121578918,chr10:121495336,chr10:121495362,chr10:121495424,chr10:121497147,chr10:121496849,chr10:121496854,chr10:121497024,chr10:121497029,chr10:121497032,chr10:121497037,chr10:121497039,chr10:121497040,chr10:121497046,chr10:121497046,chr10:121497051,chr10:121497052,chr10:121509058,chr10:121508817,chr10:121478568,chr10:121478351,chr10:121519086,chr10:121529246,chr10:121529334,chr10:121529452,chr10:121528955,chr10:121529001,chr10:121529042,chr10:121529137,chr10:121529196,chr10:121529230,chr10:121529232,chr10:121529233,chr10:121530341,chr10:121530375,chr10:121533108,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534103,chr10:121534103,chr10:121534214,chr10:121543253,chr10:121543309,chr10:121543309,chr10:121543311,chr10:121543338,chr10:121543419,chr10:121543449,chr10:121543449,chr10:121543470,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121543508,chr10:121546996,chr10:121481855,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482333,chr10:121482425,chr10:121554644,chr10:121554644,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554357,chr10:121554362,chr10:121554447,chr10:121554481,chr10:121554518,chr10:121555217,chr10:121555556,chr10:121557534,chr10:121557549,chr10:121557557,chr10:121558611,chr10:121558611,chr10:121558611,chr10:121558611,chr10:121558611,chr10:121558624,chr10:121558626,chr10:121558626,chr10:121558627,chr10:121558633,chr10:121558638,chr10:121558706,chr10:121558708,chr10:121558708,chr10:121558708,chr10:121558708,chr10:121558708,chr10:121558729,chr10:121558729,chr10:121558745,chr10:121558745,chr10:121558745,chr10:121558754,chr10:121558756,chr10:121558778,chr10:121558808,chr10:121558808,chr10:121558808,chr10:121558810,chr10:121558810,chr10:121558810,chr10:121558822,chr10:121558844,chr10:121558844,chr10:121558844,chr10:121558847,chr10:121558848,chr10:121558853,chr10:121558853,chr10:121558897,chr10:121560329,chr10:121560333,chr10:121560333,chr10:121560349,chr10:121560360,chr10:121560374,chr10:121560374,chr10:121560375,chr10:121560375,chr10:121560382,chr10:121560382,chr10:121560382,chr10:121561142,chr10:121561226,chr10:121561443,chr10:121562304,chr10:121562305,chr10:121562307,chr10:121562385,chr10:121562408,chr10:121562408,chr10:121562433,chr10:121562455,chr10:121562455,chr10:121562455,chr10:121562521,chr10:121562522,chr10:121562943,chr10:121562962,chr10:121561879,chr10:121562302,chr10:121562302,chr10:121570443,chr10:121482993,chr10:121483000,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121483028,chr10:121571177,chr10:121571182,chr10:121571204,chr10:121571230,chr10:121571308,chr10:121570988,chr10:121570996,chr10:121570996,chr10:121570996,chr10:121571022,chr10:121571040,chr10:121571069,chr10:121571931,chr10:121571988,chr10:121572047,chr10:121572094,chr10:121572174,chr10:121572174,chr10:121572175,chr10:121572175,chr10:121572176,chr10:121572176,chr10:121572177,chr10:121572177,chr10:121572177,chr10:121572183,chr10:121572187,chr10:121572403,chr10:121572404,chr10:121572422,chr10:121572422,chr10:121572449,chr10:121571545,chr10:121572519,chr10:121572524,chr10:121572524,chr10:121572527,chr10:121572532,chr10:121572536,chr10:121572545,chr10:121571550,chr10:121572647,chr10:121571635,chr10:121571662,chr10:121571674,chr10:121571674,chr10:121571674,chr10:121571677,chr10:121571681,chr10:121571693,chr10:121571694,chr10:121571694,chr10:121571701,chr10:121571702,chr10:121571705,chr10:121571705,chr10:121571712,chr10:121571712,chr10:121571714,chr10:121571714,chr10:121571714,chr10:121571715,chr10:121571721,chr10:121571724,chr10:121571729,chr10:121571735,chr10:121571761,chr10:121571816,chr10:121571845,chr10:121571851,chr10:121571852,chr10:121571866,chr10:121571866,chr10:121571866,chr10:121571884,chr10:121578627,chr10:121578648,chr10:121578678,chr10:121578783,chr10:121578816,chr10:121578830,chr10:121582116,chr10:121582124,chr10:121582128,chr10:121582137,chr10:121582145,chr10:121582146,chr10:121582146,chr10:121582149,chr10:121582163,chr10:121581937,chr10:121587133,chr10:121555307,chr10:121571828,chr10:121578795,chr10:121571720,chr10:121546947,chr10:121554637,chr10:121554625,chr10:121554594,chr10:121547011,chr10:121547006,chr10:121547007,chr10:121547034,chr10:121482996,chr10:121547008,chr10:121547024,chr10:121554444,chr10:121547094,chr10:121554468,chr10:121547012,chr10:121482995,chr10:121497022,chr10:121497088,chr10:121558679,chr10:121558801,chr10:121558835,chr10:121558766,chr10:121558782,chr10:121558713,chr10:121491744,chr10:121491700,chr10:121486620,chr10:121486644,chr10:121486661,chr10:121486484,chr10:121486509,chr10:121525308,chr10:121562380,chr10:121562286,chr10:121530456,chr10:121530454,chr10:121530454,chr10:121530454,chr10:121490151,chr10:121481890,chr10:121554520,chr10:121554632,chr10:121554625,chr10:121554625,chr10:121554625,chr10:121554625,chr10:121554617,chr10:121562364,chr10:121562286,chr10:121571306,chr10:121571304,chr10:121571277,chr10:121562405,chr10:121562397,chr10:121571099,chr10:121571140,chr10:121560277,chr10:121561185,chr10:121561367,chr10:121561346,chr10:121561225,chr10:121561247,chr10:121561319,chr10:121561370,chr10:121561319,chr10:121561225,chr10:121571721,chr10:121519484,chr10:121571944,chr10:121571827,chr10:121519483,chr10:121571840,chr10:121572092,chr10:121571840,chr10:121571840,chr10:121572491,chr10:121481916,chr10:121582096,chr10:121482031,chr10:121582092,chr10:121481944,chr10:121581718,chr10:121482020,chr10:121482020,chr10:121558605,chr10:121558616,chr10:121543356,chr10:121543338,chr10:121543325,chr10:121543346,chr10:121482961,chr10:121482980,chr10:121490178,chr10:121490180,chr10:121490182,chr10:121490182 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NA NA chr10:123254414,chr10:123246177,chr10:123246046,chr10:123331346,chr10:123246133,chr10:123246123,chr10:123331248,chr10:123246056,chr10:123331449,chr10:123331980,chr10:123246119,chr10:123331363,chr10:123246053,chr10:123246058,chr10:123331243,chr10:123246177,chr10:123332094,chr10:123245998,chr10:123331455,chr10:123331336,chr10:123246119,chr10:123246119,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123251358,chr10:123251358,chr10:123251361,chr10:123251401,chr10:123251405,chr10:123251405,chr10:123251426,chr10:123251510,chr10:123251534,chr10:123251545,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123251229,chr10:123302908,chr10:123318228,chr10:123318322,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123338432,chr10:123254850,chr10:123254876,chr10:123254938,chr10:123256661,chr10:123256363,chr10:123256368,chr10:123256538,chr10:123256543,chr10:123256546,chr10:123256551,chr10:123256553,chr10:123256554,chr10:123256560,chr10:123256560,chr10:123256565,chr10:123256566,chr10:123268572,chr10:123268331,chr10:123238082,chr10:123237865,chr10:123278600,chr10:123288760,chr10:123288848,chr10:123288966,chr10:123288469,chr10:123288515,chr10:123288556,chr10:123288651,chr10:123288710,chr10:123288744,chr10:123288746,chr10:123288747,chr10:123289855,chr10:123289889,chr10:123292622,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293617,chr10:123293617,chr10:123293728,chr10:123302767,chr10:123302823,chr10:123302823,chr10:123302825,chr10:123302852,chr10:123302933,chr10:123302963,chr10:123302963,chr10:123302984,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123303022,chr10:123306510,chr10:123241369,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241847,chr10:123241939,chr10:123314158,chr10:123314158,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313871,chr10:123313876,chr10:123313961,chr10:123313995,chr10:123314032,chr10:123314731,chr10:123315070,chr10:123317048,chr10:123317063,chr10:123317071,chr10:123318125,chr10:123318125,chr10:123318125,chr10:123318125,chr10:123318125,chr10:123318138,chr10:123318140,chr10:123318140,chr10:123318141,chr10:123318147,chr10:123318152,chr10:123318220,chr10:123318222,chr10:123318222,chr10:123318222,chr10:123318222,chr10:123318222,chr10:123318243,chr10:123318243,chr10:123318259,chr10:123318259,chr10:123318259,chr10:123318268,chr10:123318270,chr10:123318292,chr10:123318322,chr10:123318322,chr10:123318322,chr10:123318324,chr10:123318324,chr10:123318324,chr10:123318336,chr10:123318358,chr10:123318358,chr10:123318358,chr10:123318361,chr10:123318362,chr10:123318367,chr10:123318367,chr10:123318411,chr10:123319843,chr10:123319847,chr10:123319847,chr10:123319863,chr10:123319874,chr10:123319888,chr10:123319888,chr10:123319889,chr10:123319889,chr10:123319896,chr10:123319896,chr10:123319896,chr10:123320656,chr10:123320740,chr10:123320957,chr10:123321818,chr10:123321819,chr10:123321821,chr10:123321899,chr10:123321922,chr10:123321922,chr10:123321947,chr10:123321969,chr10:123321969,chr10:123321969,chr10:123322035,chr10:123322036,chr10:123322457,chr10:123322476,chr10:123321393,chr10:123321816,chr10:123321816,chr10:123329957,chr10:123242507,chr10:123242514,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123242542,chr10:123330691,chr10:123330696,chr10:123330718,chr10:123330744,chr10:123330822,chr10:123330502,chr10:123330510,chr10:123330510,chr10:123330510,chr10:123330536,chr10:123330554,chr10:123330583,chr10:123331445,chr10:123331502,chr10:123331561,chr10:123331608,chr10:123331688,chr10:123331688,chr10:123331689,chr10:123331689,chr10:123331690,chr10:123331690,chr10:123331691,chr10:123331691,chr10:123331691,chr10:123331697,chr10:123331701,chr10:123331917,chr10:123331918,chr10:123331936,chr10:123331936,chr10:123331963,chr10:123331059,chr10:123332033,chr10:123332038,chr10:123332038,chr10:123332041,chr10:123332046,chr10:123332050,chr10:123332059,chr10:123331064,chr10:123332161,chr10:123331149,chr10:123331176,chr10:123331188,chr10:123331188,chr10:123331188,chr10:123331191,chr10:123331195,chr10:123331207,chr10:123331208,chr10:123331208,chr10:123331215,chr10:123331216,chr10:123331219,chr10:123331219,chr10:123331226,chr10:123331226,chr10:123331228,chr10:123331228,chr10:123331228,chr10:123331229,chr10:123331235,chr10:123331238,chr10:123331243,chr10:123331249,chr10:123331275,chr10:123331330,chr10:123331359,chr10:123331365,chr10:123331366,chr10:123331380,chr10:123331380,chr10:123331380,chr10:123331398,chr10:123338141,chr10:123338162,chr10:123338192,chr10:123338297,chr10:123338330,chr10:123338344,chr10:123341630,chr10:123341638,chr10:123341642,chr10:123341651,chr10:123341659,chr10:123341660,chr10:123341660,chr10:123341663,chr10:123341677,chr10:123341451,chr10:123346647,chr10:123314821,chr10:123331342,chr10:123338309,chr10:123331234,chr10:123306461,chr10:123314151,chr10:123314139,chr10:123314108,chr10:123306525,chr10:123306520,chr10:123306521,chr10:123306548,chr10:123242510,chr10:123306522,chr10:123306538,chr10:123313958,chr10:123306608,chr10:123313982,chr10:123306526,chr10:123242509,chr10:123256536,chr10:123256602,chr10:123318193,chr10:123318315,chr10:123318349,chr10:123318280,chr10:123318296,chr10:123318227,chr10:123251258,chr10:123251214,chr10:123246134,chr10:123246158,chr10:123246175,chr10:123245998,chr10:123246023,chr10:123284822,chr10:123321894,chr10:123321800,chr10:123289970,chr10:123289968,chr10:123289968,chr10:123289968,chr10:123249665,chr10:123241404,chr10:123314034,chr10:123314146,chr10:123314139,chr10:123314139,chr10:123314139,chr10:123314139,chr10:123314131,chr10:123321878,chr10:123321800,chr10:123330820,chr10:123330818,chr10:123330791,chr10:123321919,chr10:123321911,chr10:123330613,chr10:123330654,chr10:123319791,chr10:123320699,chr10:123320881,chr10:123320860,chr10:123320739,chr10:123320761,chr10:123320833,chr10:123320884,chr10:123320833,chr10:123320739,chr10:123331235,chr10:123278998,chr10:123331458,chr10:123331341,chr10:123278997,chr10:123331354,chr10:123331606,chr10:123331354,chr10:123331354,chr10:123332005,chr10:123241430,chr10:123341610,chr10:123241545,chr10:123341606,chr10:123241458,chr10:123341232,chr10:123241534,chr10:123241534,chr10:123318119,chr10:123318130,chr10:123302870,chr10:123302852,chr10:123302839,chr10:123302860,chr10:123242475,chr10:123242494,chr10:123249692,chr10:123249694,chr10:123249696,chr10:123249696 chr10:123637343,chr10:123645271,chr10:123645317,chr10:123644528,chr10:123644591,chr10:123644582,chr10:123644697,chr10:123644858,chr10:123644889,chr10:123644889,chr10:123644889,chr10:123645013,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123644994,chr10:123645052,chr10:123645052,chr10:123645079,chr10:123645102,chr10:123645202,chr10:123645249,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123656142,chr10:123571686,chr10:123571684,chr10:123571759,chr10:123656367,chr10:123571488,chr10:123571751,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123656141,chr10:123656171,chr10:123571659,chr10:123656141,chr10:123652675,chr10:123653598,chr10:123653411,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123657318,chr10:123657164,chr10:123657170,chr10:123657239,chr10:123570234,chr10:123570003,chr10:123569985,chr10:123569933,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569924,chr10:123569927,chr10:123569927,chr10:123569933,chr10:123569933,chr10:123569933,chr10:123626255,chr10:123626171,chr10:123643483,chr10:123610373,chr10:123615905,chr10:123657242,chr10:123657293,chr10:123657289,chr10:123657305,chr10:123657256,chr10:123657298,chr10:123657305,chr10:123657314,chr10:123657257,chr10:123657265,chr10:123657265,chr10:123579067,chr10:123578974,chr10:123629635,chr10:123641598,chr10:123641611,chr10:123641455,chr10:123641611,chr10:123641454,chr10:123641426,chr10:123626108,chr10:123626190,chr10:123626164,chr10:123652761,chr10:123626190,chr10:123626252,chr10:123652777,chr10:123626347,chr10:123652786,chr10:123652777,chr10:123652785,chr10:123652786,chr10:123626362,chr10:123558182,chr10:123657350,chr10:123657355,chr10:123657353,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123647821,chr10:123657253,chr10:123623389,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123647774,chr10:123622963,chr10:123657171,chr10:123622970,chr10:123647769,chr10:123657183,chr10:123622977,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123562996,chr10:123601065,chr10:123558181,chr10:123607352,chr10:123607494,chr10:123607442,chr10:123607443,chr10:123607444,chr10:123607293,chr10:123607294,chr10:123558243,chr10:123607297,chr10:123607455,chr10:123554608,chr10:123554608,chr10:123653424,chr10:123653573,chr10:123653634,chr10:123653537,chr10:123626247,chr10:123653513,chr10:123653579,chr10:123653590,chr10:123626364,chr10:123626381,chr10:123626383,chr10:123626379,chr10:123626377,chr10:123626378,chr10:123626191,chr10:123653469,chr10:123626181,chr10:123653460,chr10:123570452,chr10:123626170,chr10:123653568,chr10:123626277,chr10:123653458,chr10:123570445,chr10:123626168,chr10:123653574,chr10:123653582,chr10:123626348,chr10:123653470,chr10:123570452,chr10:123626179,chr10:123653459,chr10:123570441,chr10:123626169,chr10:123653423,chr10:123653459,chr10:123570449,chr10:123626171,chr10:123653451,chr10:123653436,chr10:123653471,chr10:123626179,chr10:123653430,chr10:123610357,chr10:123608271,chr10:123610785,chr10:123610356,chr10:123608173,chr10:123608187,chr10:123610368,chr10:123608188,chr10:123610369,chr10:123608495,chr10:123608188,chr10:123610369,chr10:123612231,chr10:123612188,chr10:123621280,chr10:123608733,chr10:123608742,chr10:123608740,chr10:123576890,chr10:123576961,chr10:123608633,chr10:123576968,chr10:123576910,chr10:123576938,chr10:123608307,chr10:123576861,chr10:123608222,chr10:123608740,chr10:123608270,chr10:123608618,chr10:123577061,chr10:123608734,chr10:123654508,chr10:123630830,chr10:123558268,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123558242,chr10:123630801,chr10:123607998,chr10:123607995,chr10:123608553,chr10:123608233,chr10:123608186,chr10:123608006,chr10:123608632,chr10:123608002,chr10:123608291,chr10:123608128,chr10:123608405,chr10:123608583,chr10:123615862,chr10:123644798,chr10:123645388,chr10:123619246,chr10:123644800,chr10:123615610,chr10:123615610,chr10:123644802,chr10:123644802,chr10:123615610,chr10:123644802,chr10:123557122,chr10:123615610,chr10:123644802,chr10:123644802,chr10:123644558,chr10:123644540,chr10:123645054,chr10:123619425,chr10:123645244,chr10:123644891,chr10:123645317,chr10:123644664,chr10:123619364,chr10:123644860,chr10:123615952,chr10:123619374,chr10:123619374,chr10:123619395,chr10:123645433,chr10:123645085,chr10:123644910,chr10:123645271,chr10:123615901,chr10:123619313,chr10:123644820,chr10:123644822,chr10:123644822,chr10:123644845,chr10:123615805,chr10:123644979,chr10:123644845,chr10:123644848,chr10:123615808,chr10:123644855,chr10:123644854,chr10:123644547,chr10:123615816,chr10:123644852,chr10:123644850,chr10:123644854,chr10:123615853,chr10:123644605,chr10:123644543,chr10:123615861,chr10:123619332,chr10:123644989,chr10:123644990,chr10:123644996,chr10:123645340,chr10:123615970,chr10:123619382,chr10:123645060,chr10:123657195,chr10:123657197,chr10:123657114,chr10:123657291,chr10:123657249,chr10:123657263,chr10:123622954,chr10:123622958,chr10:123622957,chr10:123622958,chr10:123622983,chr10:12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NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Arginine-tRNA-protein_transferase__C_terminus(5%) |ATE_C(0%) 1 0 1 24238 125 ENST00000613048.4 ENST00000693395.1 upstream downstream none TCCACATGGAGATATGGAAGAGGACCGGGGATTGGTACCGTAACCATGGTCAGCTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGT...ACCACATTAGAGCCAGAAG|GGTCAGTATAGACCTTCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAA TTLEPE|gSV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17934 FGFR2::ATE1 ENSG00000066468.24::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3105 TRUE 1174 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121597962:- chr10:123237846-123357972:- chr10:123357476:- ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121841263:- chr10:123468907-123688316:- chr10:123600778:- chr10:121509058,chr10:121508817,chr10:121519086,chr10:121520039,chr10:121520769,chr10:121520793,chr10:121520874,chr10:121520907,chr10:121529246,chr10:121529334,chr10:121529452,chr10:121528955,chr10:121529001,chr10:121529042,chr10:121529137,chr10:121529196,chr10:121529230,chr10:121529232,chr10:121529233,chr10:121533108,chr10:121478568,chr10:121478351,chr10:121534099,chr10:121534099,chr10:121534099,chr10:121534103,chr10:121534103,chr10:121534214,chr10:121543253,chr10:121543309,chr10:121543309,chr10:121543311,chr10:121543338,chr10:121543419,chr10:121543449,chr10:121543449,chr10:121543470,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121543508,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554357,chr10:121554362,chr10:121554481,chr10:121554518,chr10:121554644,chr10:121481855,chr10:121481855,chr10:121481855,chr10:121481931,chr10:121481931,chr10:121481932,chr10:121481945,chr10:121481961,chr10:121481961,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482032,chr10:121482032,chr10:121482039,chr10:121482039,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482046,chr10:121482080,chr10:121482081,chr10:121482425,chr10:121558745,chr10:121558754,chr10:121558756,chr10:121558808,chr10:121558810,chr10:121558822,chr10:121558844,chr10:121558847,chr10:121558848,chr10:121558853,chr10:121558897,chr10:121558611,chr10:121558611,chr10:121558611,chr10:121558611,chr10:121558708,chr10:121558708,chr10:121558729,chr10:121560329,chr10:121560333,chr10:121560333,chr10:121560349,chr10:121560360,chr10:121560374,chr10:121560374,chr10:121560375,chr10:121560375,chr10:121560382,chr10:121560382,chr10:121560382,chr10:121561142,chr10:121561226,chr10:121561443,chr10:121562304,chr10:121562305,chr10:121562307,chr10:121562408,chr10:121562455,chr10:121561879,chr10:121562302,chr10:121570443,chr10:121571177,chr10:121571182,chr10:121571204,chr10:121571230,chr10:121571308,chr10:121570988,chr10:121570996,chr10:121570996,chr10:121570996,chr10:121571022,chr10:121571040,chr10:121571069,chr10:121571931,chr10:121571988,chr10:121572047,chr10:121572094,chr10:121572174,chr10:121572174,chr10:121572175,chr10:121572175,chr10:121572176,chr10:121572176,chr10:121572177,chr10:121572177,chr10:121572183,chr10:121572187,chr10:121572403,chr10:121572404,chr10:121572422,chr10:121572422,chr10:121572449,chr10:121571545,chr10:121572519,chr10:121572524,chr10:121572524,chr10:121572527,chr10:121572532,chr10:121572536,chr10:121572545,chr10:121571550,chr10:121572647,chr10:121571635,chr10:121571662,chr10:121571674,chr10:121571674,chr10:121571674,chr10:121571677,chr10:121571681,chr10:121571693,chr10:121571694,chr10:121571694,chr10:121571701,chr10:121571702,chr10:121571705,chr10:121571705,chr10:121571712,chr10:121571712,chr10:121571714,chr10:121571714,chr10:121571714,chr10:121571715,chr10:121571721,chr10:121571724,chr10:121571729,chr10:121571735,chr10:121571761,chr10:121571816,chr10:121571845,chr10:121571851,chr10:121571852,chr10:121571866,chr10:121571866,chr10:121571866,chr10:121571884,chr10:121578816,chr10:121578830,chr10:121578627,chr10:121578648,chr10:121578678,chr10:121578783,chr10:121482993,chr10:121483000,chr10:121483012,chr10:121483020,chr10:121483028,chr10:121582116,chr10:121582124,chr10:121582128,chr10:121582137,chr10:121582145,chr10:121582146,chr10:121582146,chr10:121582149,chr10:121582163,chr10:121581937,chr10:121481890,chr10:121554520,chr10:121554632,chr10:121554625,chr10:121554625,chr10:121554625,chr10:121554625,chr10:121554617,chr10:121562364,chr10:121562286,chr10:121571306,chr10:121571304,chr10:121571277,chr10:121562405,chr10:121562397,chr10:121571099,chr10:121571140,chr10:121560277,chr10:121561185,chr10:121561367,chr10:121561346,chr10:121561225,chr10:121561247,chr10:121561319,chr10:121561370,chr10:121561319,chr10:121561225,chr10:121571721,chr10:121519484,chr10:121571944,chr10:121571827,chr10:121519483,chr10:121571840,chr10:121572092,chr10:121571840,chr10:121571840,chr10:121572491,chr10:121481916,chr10:121582096,chr10:121482031,chr10:121582092,chr10:121481944,chr10:121581718,chr10:121482020,chr10:121482020,chr10:121543356,chr10:121543338,chr10:121543325,chr10:121543346,chr10:121482961,chr10:121482980,chr10:121486620,chr10:121486644,chr10:121486661,chr10:121486484,chr10:121486509,chr10:121494900,chr10:121520758,chr10:121520757,chr10:121486663,chr10:121486532,chr10:121571832,chr10:121486619,chr10:121486609,chr10:121571734,chr10:121486542,chr10:121571935,chr10:121572466,chr10:121486605,chr10:121571849,chr10:121486539,chr10:121486544,chr10:121571729,chr10:121486663,chr10:121572580,chr10:121486484,chr10:121571941,chr10:121571822,chr10:121486605,chr10:121486605,chr10:121481861,chr10:121481993,chr10:121481993,chr10:121543394,chr10:121558714,chr10:121558678,chr10:121558808,chr10:121491967,chr10:121491978,chr10:121491876,chr10:121482030,chr10:121481842,chr10:121481842,chr10:121578918,chr10:121490178,chr10:121490180,chr10:121490182,chr10:121491844,chr10:121491891,chr10:121491996,chr10:121492020,chr10:121491713,chr10:121491715,chr10:121491715,chr10:121495336,chr10:121495362,chr10:121495424 chr10:121866740,chr10:121866656,chr10:121856390,chr10:121881939,chr10:121881922,chr10:121881939,chr10:121882025,chr10:121881925,chr10:121897727,chr10:121897778,chr10:121897774,chr10:121897790,chr10:121897741,chr10:121897783,chr10:121897790,chr10:121897799,chr10:121897742,chr10:121897750,chr10:121897750,chr10:121870120,chr10:121883968,chr10:121850858,chr10:121882083,chr10:121882096,chr10:121881940,chr10:121882096,chr10:121881939,chr10:121881911,chr10:121866593,chr10:121866675,chr10:121866649,chr10:121893246,chr10:121866675,chr10:121866737,chr10:121866832,chr10:121893262,chr10:121893271,chr10:121893262,chr10:121893270,chr10:121866847,chr10:121893271,chr10:121847979,chr10:121847927,chr10:121847928,chr10:121847929,chr10:121847778,chr10:121847779,chr10:121847782,chr10:121847940,chr10:121847837,chr10:121897835,chr10:121897840,chr10:121897838,chr10:121888345,chr10:121897775,chr10:121863485,chr10:121863487,chr10:121863874,chr10:121888306,chr10:121897738,chr10:121897581,chr10:121897582,chr10:121897739,chr10:121888249,chr10:121863448,chr10:121888259,chr10:121863455,chr10:121897656,chr10:121863462,chr10:121888254,chr10:121897668,chr10:121888259,chr10:121897781,chr10:121863487,chr10:121841550,chr10:121893943,chr10:121894059,chr10:121894067,chr10:121893955,chr10:121893944,chr10:121893908,chr10:121893944,chr10:121893936,chr10:121893921,chr10:121893956,chr10:121893915,chr10:121894022,chr10:121893998,chr10:121894064,chr10:121894075,chr10:121893954,chr10:121893945,chr10:121894053,chr10:121850842,chr10:121848756,chr10:121851270,chr10:121850841,chr10:121848658,chr10:121848672,chr10:121850853,chr10:121848673,chr10:121850854,chr10:121848980,chr10:121848673,chr10:121850854,chr10:121852716,chr10:121852673,chr10:121861765,chr10:121849218,chr10:121849227,chr10:121849225,chr10:121849118,chr10:121848792,chr10:121849103,chr10:121849219,chr10:121894993,chr10:121848483,chr10:121848480,chr10:121849038,chr10:121848718,chr10:121848671,chr10:121848491,chr10:121849117,chr10:121848487,chr10:121848776,chr10:121848613,chr10:121848890,chr10:121849068,chr10:121856347,chr10:121885283,chr10:121885873,chr10:121859731,chr10:121856095,chr10:121885285,chr10:121856095,chr10:121885287,chr10:121885287,chr10:121856095,chr10:121885287,chr10:121856095,chr10:121885287,chr10:121885287,chr10:121885043,chr10:121885025,chr10:121859910,chr10:121885539,chr10:121885729,chr10:121885376,chr10:121885802,chr10:121859849,chr10:121885149,chr10:121885345,chr10:121856437,chr10:121859859,chr10:121859859,chr10:121859880,chr10:121885918,chr10:121885570,chr10:121885395,chr10:121856386,chr10:121859798,chr10:121885756,chr10:121885305,chr10:121885307,chr10:121885307,chr10:121856290,chr10:121885330,chr10:121885464,chr10:121885330,chr10:121856293,chr10:121885333,chr10:121885340,chr10:121885339,chr10:121856301,chr10:121885032,chr10:121885337,chr10:121885335,chr10:121885339,chr10:121856338,chr10:121885090,chr10:121885028,chr10:121856346,chr10:121859817,chr10:121885474,chr10:121885475,chr10:121885481,chr10:121856455,chr10:121859867,chr10:121885825,chr10:121885545,chr10:121897734,chr10:121897748,chr10:121897680,chr10:121897682,chr10:121897599,chr10:121897776,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871315,chr10:121871286,chr10:121863439,chr10:121863443,chr10:121863442,chr10:121863443,chr10:121863468,chr10:121863468,chr10:121863469,chr10:121863468,chr10:121863483,chr10:121863411,chr10:121841665,chr10:121847886,chr10:121848285,chr10:121848349,chr10:121848347,chr10:121848346,chr10:121848345,chr10:121848367,chr10:121849136,chr10:121848612,chr10:121848612,chr10:121848601,chr10:121848651,chr10:121848664,chr10:121848858,chr10:121848858,chr10:121848441,chr10:121851315,chr10:121852470,chr10:121852497,chr10:121852497,chr10:121852504,chr10:121852526,chr10:121852605,chr10:121852656,chr10:121852593,chr10:121852632,chr10:121856304,chr10:121856037,chr10:121856076,chr10:121856104,chr10:121856059,chr10:121859693,chr10:121859696,chr10:121859779,chr10:121859834,chr10:121859860,chr10:121864303,chr10:121863416,chr10:121863471,chr10:121863405,chr10:121863391,chr10:121863645,chr10:121863790,chr10:121863767,chr10:121866692,chr10:121866676,chr10:121866662,chr10:121866673,chr10:121871241,chr10:121871273,chr10:121885757,chr10:121885757,chr10:121885038,chr10:121885251,chr10:121885861,chr10:121877828,chr10:121881902,chr10:121881907,chr10:121885756,chr10:121885802,chr10:121885013,chr10:121885076,chr10:121885067,chr10:121885182,chr10:121885343,chr10:121885374,chr10:121885374,chr10:121885374,chr10:121885498,chr10:121885498,chr10:121885484,chr10:121885479,chr10:121885479,chr10:121885537,chr10:121885537,chr10:121885564,chr10:121885587,chr10:121885687,chr10:121885734,chr10:121888177,chr10:121888216,chr10:121888233,chr10:121893160,chr10:121894083,chr10:121894098,chr10:121893896,chr10:121896568,chr10:121896640,chr10:121896826,chr10:121897635,chr10:121897635,chr10:121897803,chr10:121897803,chr10:121884126,chr10:121884132,chr10:121884120,chr10:121896627,chr10:121896852,chr10:121896628,chr10:121896655,chr10:121896626,chr10:121896656,chr10:121896626,chr10:121897649,chr10:121897655,chr10:121897724 NA NA chr10:123268572,chr10:123268331,chr10:123278600,chr10:123279553,chr10:123280283,chr10:123280307,chr10:123280388,chr10:123280421,chr10:123288760,chr10:123288848,chr10:123288966,chr10:123288469,chr10:123288515,chr10:123288556,chr10:123288651,chr10:123288710,chr10:123288744,chr10:123288746,chr10:123288747,chr10:123292622,chr10:123238082,chr10:123237865,chr10:123293613,chr10:123293613,chr10:123293613,chr10:123293617,chr10:123293617,chr10:123293728,chr10:123302767,chr10:123302823,chr10:123302823,chr10:123302825,chr10:123302852,chr10:123302933,chr10:123302963,chr10:123302963,chr10:123302984,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123303022,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313871,chr10:123313876,chr10:123313995,chr10:123314032,chr10:123314158,chr10:123241369,chr10:123241369,chr10:123241369,chr10:123241445,chr10:123241445,chr10:123241446,chr10:123241459,chr10:123241475,chr10:123241475,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241546,chr10:123241546,chr10:123241553,chr10:123241553,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241560,chr10:123241594,chr10:123241595,chr10:123241939,chr10:123318259,chr10:123318268,chr10:123318270,chr10:123318322,chr10:123318324,chr10:123318336,chr10:123318358,chr10:123318361,chr10:123318362,chr10:123318367,chr10:123318411,chr10:123318125,chr10:123318125,chr10:123318125,chr10:123318125,chr10:123318222,chr10:123318222,chr10:123318243,chr10:123319843,chr10:123319847,chr10:123319847,chr10:123319863,chr10:123319874,chr10:123319888,chr10:123319888,chr10:123319889,chr10:123319889,chr10:123319896,chr10:123319896,chr10:123319896,chr10:123320656,chr10:123320740,chr10:123320957,chr10:123321818,chr10:123321819,chr10:123321821,chr10:123321922,chr10:123321969,chr10:123321393,chr10:123321816,chr10:123329957,chr10:123330691,chr10:123330696,chr10:123330718,chr10:123330744,chr10:123330822,chr10:123330502,chr10:123330510,chr10:123330510,chr10:123330510,chr10:123330536,chr10:123330554,chr10:123330583,chr10:123331445,chr10:123331502,chr10:123331561,chr10:123331608,chr10:123331688,chr10:123331688,chr10:123331689,chr10:123331689,chr10:123331690,chr10:123331690,chr10:123331691,chr10:123331691,chr10:123331697,chr10:123331701,chr10:123331917,chr10:123331918,chr10:123331936,chr10:123331936,chr10:123331963,chr10:123331059,chr10:123332033,chr10:123332038,chr10:123332038,chr10:123332041,chr10:123332046,chr10:123332050,chr10:123332059,chr10:123331064,chr10:123332161,chr10:123331149,chr10:123331176,chr10:123331188,chr10:123331188,chr10:123331188,chr10:123331191,chr10:123331195,chr10:123331207,chr10:123331208,chr10:123331208,chr10:123331215,chr10:123331216,chr10:123331219,chr10:123331219,chr10:123331226,chr10:123331226,chr10:123331228,chr10:123331228,chr10:123331228,chr10:123331229,chr10:123331235,chr10:123331238,chr10:123331243,chr10:123331249,chr10:123331275,chr10:123331330,chr10:123331359,chr10:123331365,chr10:123331366,chr10:123331380,chr10:123331380,chr10:123331380,chr10:123331398,chr10:123338330,chr10:123338344,chr10:123338141,chr10:123338162,chr10:123338192,chr10:123338297,chr10:123242507,chr10:123242514,chr10:123242526,chr10:123242534,chr10:123242542,chr10:123341630,chr10:123341638,chr10:123341642,chr10:123341651,chr10:123341659,chr10:123341660,chr10:123341660,chr10:123341663,chr10:123341677,chr10:123341451,chr10:123241404,chr10:123314034,chr10:123314146,chr10:123314139,chr10:123314139,chr10:123314139,chr10:123314139,chr10:123314131,chr10:123321878,chr10:123321800,chr10:123330820,chr10:123330818,chr10:123330791,chr10:123321919,chr10:123321911,chr10:123330613,chr10:123330654,chr10:123319791,chr10:123320699,chr10:123320881,chr10:123320860,chr10:123320739,chr10:123320761,chr10:123320833,chr10:123320884,chr10:123320833,chr10:123320739,chr10:123331235,chr10:123278998,chr10:123331458,chr10:123331341,chr10:123278997,chr10:123331354,chr10:123331606,chr10:123331354,chr10:123331354,chr10:123332005,chr10:123241430,chr10:123341610,chr10:123241545,chr10:123341606,chr10:123241458,chr10:123341232,chr10:123241534,chr10:123241534,chr10:123302870,chr10:123302852,chr10:123302839,chr10:123302860,chr10:123242475,chr10:123242494,chr10:123246134,chr10:123246158,chr10:123246175,chr10:123245998,chr10:123246023,chr10:123254414,chr10:123280272,chr10:123280271,chr10:123246177,chr10:123246046,chr10:123331346,chr10:123246133,chr10:123246123,chr10:123331248,chr10:123246056,chr10:123331449,chr10:123331980,chr10:123246119,chr10:123331363,chr10:123246053,chr10:123246058,chr10:123331243,chr10:123246177,chr10:123332094,chr10:123245998,chr10:123331455,chr10:123331336,chr10:123246119,chr10:123246119,chr10:123241375,chr10:123241507,chr10:123241507,chr10:123302908,chr10:123318228,chr10:123318192,chr10:123318322,chr10:123251481,chr10:123251492,chr10:123251390,chr10:123241544,chr10:123241356,chr10:123241356,chr10:123338432,chr10:123249692,chr10:123249694,chr10:123249696,chr10:123251358,chr10:123251405,chr10:123251510,chr10:123251534,chr10:123251227,chr10:123251229,chr10:123251229,chr10:123254850,chr10:123254876,chr10:123254938 chr10:123626255,chr10:123626171,chr10:123615905,chr10:123641454,chr10:123641437,chr10:123641454,chr10:123641540,chr10:123641440,chr10:123657242,chr10:123657293,chr10:123657289,chr10:123657305,chr10:123657256,chr10:123657298,chr10:123657305,chr10:123657314,chr10:123657257,chr10:123657265,chr10:123657265,chr10:123629635,chr10:123643483,chr10:123610373,chr10:123641598,chr10:123641611,chr10:123641455,chr10:123641611,chr10:123641454,chr10:123641426,chr10:123626108,chr10:123626190,chr10:123626164,chr10:123652761,chr10:123626190,chr10:123626252,chr10:123626347,chr10:123652777,chr10:123652786,chr10:123652777,chr10:123652785,chr10:123626362,chr10:123652786,chr10:123607494,chr10:123607442,chr10:123607443,chr10:123607444,chr10:123607293,chr10:123607294,chr10:123607297,chr10:123607455,chr10:123607352,chr10:123657350,chr10:123657355,chr10:123657353,chr10:123647860,chr10:123657290,chr10:123623000,chr10:123623002,chr10:123623389,chr10:123647821,chr10:123657253,chr10:123657096,chr10:123657097,chr10:123657254,chr10:123647764,chr10:123622963,chr10:123647774,chr10:123622970,chr10:123657171,chr10:123622977,chr10:123647769,chr10:123657183,chr10:123647774,chr10:123657296,chr10:123623002,chr10:123601065,chr10:123653458,chr10:123653574,chr10:123653582,chr10:123653470,chr10:123653459,chr10:123653423,chr10:123653459,chr10:123653451,chr10:123653436,chr10:123653471,chr10:123653430,chr10:123653537,chr10:123653513,chr10:123653579,chr10:123653590,chr10:123653469,chr10:123653460,chr10:123653568,chr10:123610357,chr10:123608271,chr10:123610785,chr10:123610356,chr10:123608173,chr10:123608187,chr10:123610368,chr10:123608188,chr10:123610369,chr10:123608495,chr10:123608188,chr10:123610369,chr10:123612231,chr10:123612188,chr10:123621280,chr10:123608733,chr10:123608742,chr10:123608740,chr10:123608633,chr10:123608307,chr10:123608618,chr10:123608734,chr10:123654508,chr10:123607998,chr10:123607995,chr10:123608553,chr10:123608233,chr10:123608186,chr10:123608006,chr10:123608632,chr10:123608002,chr10:123608291,chr10:123608128,chr10:123608405,chr10:123608583,chr10:123615862,chr10:123644798,chr10:123645388,chr10:123619246,chr10:123615610,chr10:123644800,chr10:123615610,chr10:123644802,chr10:123644802,chr10:123615610,chr10:123644802,chr10:123615610,chr10:123644802,chr10:123644802,chr10:123644558,chr10:123644540,chr10:123619425,chr10:123645054,chr10:123645244,chr10:123644891,chr10:123645317,chr10:123619364,chr10:123644664,chr10:123644860,chr10:123615952,chr10:123619374,chr10:123619374,chr10:123619395,chr10:123645433,chr10:123645085,chr10:123644910,chr10:123615901,chr10:123619313,chr10:123645271,chr10:123644820,chr10:123644822,chr10:123644822,chr10:123615805,chr10:123644845,chr10:123644979,chr10:123644845,chr10:123615808,chr10:123644848,chr10:123644855,chr10:123644854,chr10:123615816,chr10:123644547,chr10:123644852,chr10:123644850,chr10:123644854,chr10:123615853,chr10:123644605,chr10:123644543,chr10:123615861,chr10:123619332,chr10:123644989,chr10:123644990,chr10:123644996,chr10:123615970,chr10:123619382,chr10:123645340,chr10:123645060,chr10:123657249,chr10:123657263,chr10:123657195,chr10:123657197,chr10:123657114,chr10:123657291,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630830,chr10:123630801,chr10:123622954,chr10:123622958,chr10:123622957,chr10:123622958,chr10:123622983,chr10:123622983,chr10:123622984,chr10:123622983,chr10:123622998,chr10:123622926,chr10:123601180,chr10:123607401,chr10:123607800,chr10:123607864,chr10:123607862,chr10:123607861,chr10:123607860,chr10:123607882,chr10:123608651,chr10:123608127,chr10:123608127,chr10:123608116,chr10:123608166,chr10:123608179,chr10:123608373,chr10:123608373,chr10:123607956,chr10:123610830,chr10:123611985,chr10:123612012,chr10:123612012,chr10:123612019,chr10:123612041,chr10:123612120,chr10:123612171,chr10:123612108,chr10:123612147,chr10:123615819,chr10:123615552,chr10:123615591,chr10:123615619,chr10:123615574,chr10:123619208,chr10:123619211,chr10:123619294,chr10:123619349,chr10:123619375,chr10:123623818,chr10:123622931,chr10:123622986,chr10:123622920,chr10:123622906,chr10:123623160,chr10:123623305,chr10:123623282,chr10:123626207,chr10:123626191,chr10:123626177,chr10:123626188,chr10:123630756,chr10:123630788,chr10:123645272,chr10:123645272,chr10:123644553,chr10:123644766,chr10:123645376,chr10:123637343,chr10:123641417,chr10:123641422,chr10:123645271,chr10:123645317,chr10:123644528,chr10:123644591,chr10:123644582,chr10:123644697,chr10:123644858,chr10:123644889,chr10:123644889,chr10:123644889,chr10:123645013,chr10:123645013,chr10:123644999,chr10:123644994,chr10:123644994,chr10:123645052,chr10:123645052,chr10:123645079,chr10:123645102,chr10:123645202,chr10:123645249,chr10:123647692,chr10:123647731,chr10:123647748,chr10:123652675,chr10:123653598,chr10:123653613,chr10:123653411,chr10:123656083,chr10:123656155,chr10:123656341,chr10:123657150,chr10:123657150,chr10:123657318,chr10:123657318,chr10:123643641,chr10:123643647,chr10:123643635,chr10:123656142,chr10:123656367,chr10:123656143,chr10:123656170,chr10:123656141,chr10:123656171,chr10:123656141,chr10:123657164,chr10:123657170,chr10:123657239 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Arginine-tRNA-protein_transferase__C_terminus(60%) |ATE_C(45%) 0 1 0 12337 107 ENST00000613048.4 ENST00000540606.7 upstream downstream duplicates(1) GGGACAACACAGGTCGCGGAGGAGCGTTGCCATTCAAG|GCAGAGACTCCCCCTAATGGGCCAGATTGTGGCTATGGCTCCTTTCACCAGCAGTACTGGCTT...GGGGGTGATTGACATCCTCCCAAACTGTGTATCATCTGTGTATTTGTACTACGATCCTGATTATTCGTTTTTGTCTTTGGGCGTCTACTCTGCACTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Lung no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 123298106 FALSE 123683844 FALSE YES In-frame FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17938 CD44::FGFR2 ENSG00000026508.21::ENSG00000066468.24 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3106 FALSE NA CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121565704:- chr10:123237846-123357972:- chr10:123325218:- chr11:35218442,chr11:35227072,chr11:35227109,chr11:35227109,chr11:35227109,chr11:35227109,chr11:35227123,chr11:35227123,chr11:35227139,chr11:35227365,chr11:35227365,chr11:35227365,chr11:35176234,chr11:35227124,chr11:35176111,chr11:35227464,chr11:35175945,chr11:35176004,chr11:35227179,chr11:35176072,chr11:35176252,chr11:35227127,chr11:35227134,chr11:35227127,chr11:35225592,chr11:35225624,chr11:35218474,chr11:35218513,chr11:35218530,chr11:35198789,chr11:35176442,chr11:35227133,chr11:35227133,chr11:35227434,chr11:35227434,chr11:35227303,chr11:35227434,chr11:35175905,chr11:35176021,chr11:35176093,chr11:35176160 chr10:121578676,chr10:121571781,chr10:121571774,chr10:121588741,chr10:121571772,chr10:121588737,chr10:121571774,chr10:121588741,chr10:121571774,chr10:121571782,chr10:121571773,chr10:121571781,chr10:121571726,chr10:121571864,chr10:121571864,chr10:121571947,chr10:121572230,chr10:121571422,chr10:121571586,chr10:121571607,chr10:121571586,chr10:121571722,chr10:121571706,chr10:121571726,chr10:121576885,chr10:121576885,chr10:121578144,chr10:121578745,chr10:121577793,chr10:121584312,chr10:121584312,chr10:121588694,chr10:121588701,chr10:121588694,chr10:121588695,chr10:121588799,chr10:121588818,chr10:121595441,chr10:121571806,chr10:121572117,chr10:121571845 NA NA chr11:35239989,chr11:35248619,chr11:35248656,chr11:35248656,chr11:35248656,chr11:35248656,chr11:35248670,chr11:35248670,chr11:35248686,chr11:35248912,chr11:35248912,chr11:35248912,chr11:35197781,chr11:35248671,chr11:35197658,chr11:35249011,chr11:35197492,chr11:35197551,chr11:35248726,chr11:35197619,chr11:35197799,chr11:35248674,chr11:35248681,chr11:35248674,chr11:35247139,chr11:35247171,chr11:35240021,chr11:35240060,chr11:35240077,chr11:35220336,chr11:35197989,chr11:35248680,chr11:35248680,chr11:35248981,chr11:35248981,chr11:35248850,chr11:35248981,chr11:35197452,chr11:35197568,chr11:35197640,chr11:35197707 chr10:123338190,chr10:123331295,chr10:123331288,chr10:123348255,chr10:123331286,chr10:123348251,chr10:123331288,chr10:123348255,chr10:123331288,chr10:123331296,chr10:123331287,chr10:123331295,chr10:123331240,chr10:123331378,chr10:123331378,chr10:123331461,chr10:123331744,chr10:123330936,chr10:123331100,chr10:123331121,chr10:123331100,chr10:123331236,chr10:123331220,chr10:123331240,chr10:123336399,chr10:123336399,chr10:123337658,chr10:123338259,chr10:123337307,chr10:123343826,chr10:123343826,chr10:123348208,chr10:123348215,chr10:123348208,chr10:123348209,chr10:123348313,chr10:123348332,chr10:123354955,chr10:123331320,chr10:123331631,chr10:123331359 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(100%) 5 0 6 29118 17930 ENST00000263398.11 ENST00000358487.10 downstream downstream mismatches(1) GCGGACCCCAGCCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCTCCGGACACCATGGACAAGTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|AGCCACCAACCAAATACCAAATCTCTCAACCAGAAGTGTACGTGGCTGCGCCAGGGGAGTCGCTAGAGGTGCGCTGCCTGTTGAAAGATGCCGCCGTGATCAGTTGGACTAAGGATGGGGTGCACTTGGGGCCCAACAATAGcACAG MDKFWWHAAWGLCLVPLSLAQI|ePPTKYQISQPEVYVAAPGESLEVRCLLKDAAVISWTKDGVHLGPNNsT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation 17940 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121538592:- chr10:123237846-123357972:- chr10:123298106:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Immunoglobulin_I-set_domain(35%),Immunoglobulin_domain(100%)|Extracellular_link_domain(100%) I-set(70%),Ig_2(100%),Ig_3(85%),ig(90%)|Xlink(100%) 1 1 3 15742 34774 ENST00000613048.4 ENST00000263398.11 upstream upstream mismatches(2) ATGCCAACCATGCGGTGGCTGAAAAACGGGAAGGAGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG___GTACGAAACCAGCACTGGAGCCTCATTATGGA...ATGAATACGGGTCCATCAATCACACGTACCACCTGGATGTTGTGG|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAGCTCTGAGCATCGGATTTGAGACCTGCAG___GTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCG EYGSINHTYHLDVV|dLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17941 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121564502:- chr10:123237846-123357972:- chr10:123324016:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121554598,chr10:121554508,chr10:121554473,chr10:121554452,chr10:121543382,chr10:121554487,chr10:121554632,chr10:121543255,chr10:121543311,chr10:121543328,chr10:121543449,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543501,chr10:121543508 chr11:35176145,chr11:35176148,chr11:35176190,chr11:35144546,chr11:35176206,chr11:35176207,chr11:35176285,chr11:35176173,chr11:35176093,chr11:35176181,chr11:35176386,chr11:35176386,chr11:35176195,chr11:35176097,chr11:35176296,chr11:35176296,chr11:35176412,chr11:35176059,chr11:35176189,chr11:35176194,chr11:35176194,chr11:35176203,chr11:35176278,chr11:35176278,chr11:35176094,chr11:35176094,chr11:35175901,chr11:35175882,chr11:35176084,chr11:35175901,chr11:35175899,chr11:35175890 NA NA chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123314112,chr10:123314022,chr10:123313987,chr10:123313966,chr10:123302896,chr10:123314001,chr10:123314146,chr10:123302769,chr10:123302825,chr10:123302842,chr10:123302963,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303015,chr10:123303022 chr11:35197692,chr11:35197695,chr11:35197737,chr11:35166093,chr11:35197753,chr11:35197754,chr11:35197832,chr11:35197720,chr11:35197640,chr11:35197728,chr11:35197933,chr11:35197933,chr11:35197742,chr11:35197644,chr11:35197843,chr11:35197843,chr11:35197959,chr11:35197606,chr11:35197736,chr11:35197741,chr11:35197741,chr11:35197750,chr11:35197825,chr11:35197825,chr11:35197641,chr11:35197641,chr11:35197448,chr11:35197429,chr11:35197631,chr11:35197448,chr11:35197446,chr11:35197437 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Immunoglobulin_domain(100%)|Extracellular_link_domain(100%) I-set(0%),Ig_3(1%)|Xlink(100%) 1 0 2 19990 34774 ENST00000358487.10 ENST00000263398.11 upstream upstream mismatches(1) CCGTGATCAGTTGGACTAAGGATGGGGTGCACTTGGGGCCCAACAATAGGACAGTGCTTATTGGGGAGTACTTGCAGATAAAGGGCGCCACGCCTAGAGAC...ACCGATGGTGCGGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGAAAAATGGTCGCTACAGCATCTCTCGGACGGAGGCCGCTGACCTCTGCAAGGCTTTCAATAGCACCTTGCCCACAATGGCCCAGATGGAGAAAG TDGAEDFVSENSNNK|nLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17942 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121564502:- chr10:123237846-123357972:- chr10:123324016:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35186832:+ chr11:35160429-35253949:+ chr11:35208379:+ chr10:121543311,chr10:121543328,chr10:121543449,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121554598,chr10:121554508,chr10:121554473,chr10:121543382,chr10:121554452,chr10:121554487,chr10:121543255,chr10:121554632 chr11:35176094,chr11:35176094,chr11:35175901,chr11:35175882,chr11:35176084,chr11:35175901,chr11:35175899,chr11:35175890,chr11:35176145,chr11:35176148,chr11:35176190,chr11:35144546,chr11:35176206,chr11:35176207,chr11:35176285,chr11:35176173,chr11:35176093,chr11:35176181,chr11:35176386,chr11:35176386,chr11:35176195,chr11:35176097,chr11:35176296,chr11:35176296,chr11:35176412,chr11:35176059,chr11:35176189,chr11:35176194,chr11:35176194,chr11:35176203,chr11:35176278,chr11:35176278 NA NA chr10:123302825,chr10:123302842,chr10:123302963,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123314112,chr10:123314022,chr10:123313987,chr10:123302896,chr10:123313966,chr10:123314001,chr10:123302769,chr10:123314146 chr11:35197641,chr11:35197641,chr11:35197448,chr11:35197429,chr11:35197631,chr11:35197448,chr11:35197446,chr11:35197437,chr11:35197692,chr11:35197695,chr11:35197737,chr11:35166093,chr11:35197753,chr11:35197754,chr11:35197832,chr11:35197720,chr11:35197640,chr11:35197728,chr11:35197933,chr11:35197933,chr11:35197742,chr11:35197644,chr11:35197843,chr11:35197843,chr11:35197959,chr11:35197606,chr11:35197736,chr11:35197741,chr11:35197741,chr11:35197750,chr11:35197825,chr11:35197825 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Immunoglobulin_domain(100%)|Extracellular_link_domain(7%) I-set(0%),Ig_3(1%)|Xlink(77%) 0 1 1 19990 39172 ENST00000613048.4 ENST00000531118.5 upstream upstream mismatches(1) GGAAGATTTTGTCAGTGAGAACAGTAACAACAAGA|CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCA...AGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCAGTAAGGAGAATAAATCACTGTGCTTCCCAATAGCAATTCCCTGGCAAAATGTCT EDFVSENSNNK|tppeedctsvtdlpnafdgpit NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17943 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121565438:- chr10:123237846-123357972:- chr10:123324952:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35186832:+ chr11:35160429-35253949:+ chr11:35208379:+ chr10:121543311,chr10:121543328,chr10:121543449,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121554598,chr10:121554508,chr10:121554473,chr10:121543382,chr10:121554452,chr10:121554487,chr10:121543255,chr10:121554632 chr11:35176094,chr11:35176094,chr11:35175901,chr11:35175882,chr11:35176084,chr11:35175901,chr11:35175899,chr11:35175890,chr11:35176145,chr11:35176148,chr11:35176190,chr11:35144546,chr11:35176206,chr11:35176207,chr11:35176285,chr11:35176173,chr11:35176093,chr11:35176181,chr11:35176386,chr11:35176386,chr11:35176195,chr11:35176097,chr11:35176296,chr11:35176296,chr11:35176412,chr11:35176059,chr11:35176189,chr11:35176194,chr11:35176194,chr11:35176203,chr11:35176278,chr11:35176278 NA NA chr10:123302825,chr10:123302842,chr10:123302963,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123314112,chr10:123314022,chr10:123313987,chr10:123302896,chr10:123313966,chr10:123314001,chr10:123302769,chr10:123314146 chr11:35197641,chr11:35197641,chr11:35197448,chr11:35197429,chr11:35197631,chr11:35197448,chr11:35197446,chr11:35197437,chr11:35197692,chr11:35197695,chr11:35197737,chr11:35166093,chr11:35197753,chr11:35197754,chr11:35197832,chr11:35197720,chr11:35197640,chr11:35197728,chr11:35197933,chr11:35197933,chr11:35197742,chr11:35197644,chr11:35197843,chr11:35197843,chr11:35197959,chr11:35197606,chr11:35197736,chr11:35197741,chr11:35197741,chr11:35197750,chr11:35197825,chr11:35197825 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Immunoglobulin_domain(100%)|Extracellular_link_domain(7%) I-set(0%),Ig_3(1%)|Xlink(77%) 1 0 1 16715 39172 ENST00000358487.10 ENST00000263398.11 upstream upstream mismatches(1) GCCGTGATCAGTTGGACTAAGGATGGGGTGCACTTGGGGCCCAACAATAGGACAGTGCTTATTGGGGAGTACTTGCAGATAAAGGGCGCCACGCCTAGAGA...CTTCATGGTGAATGTCACAG|CTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAA___CTATTGTTAACC FMVNVT|aPPEEDCTSVTDLPNAFDGPITITIVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17944 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35176575:+ chr11:35160429-35253949:+ chr11:35198122:+ chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121554598,chr10:121554508,chr10:121554473,chr10:121554452,chr10:121543382,chr10:121554487,chr10:121554632,chr10:121543255,chr10:121543311,chr10:121543328,chr10:121543449,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543501,chr10:121543508 chr11:35176145,chr11:35176148,chr11:35176190,chr11:35144546,chr11:35176206,chr11:35176207,chr11:35176285,chr11:35176173,chr11:35176093,chr11:35176181,chr11:35176386,chr11:35176386,chr11:35176195,chr11:35176097,chr11:35176296,chr11:35176296,chr11:35176412,chr11:35176059,chr11:35176189,chr11:35176194,chr11:35176194,chr11:35176203,chr11:35176278,chr11:35176278,chr11:35176094,chr11:35176094,chr11:35175901,chr11:35175882,chr11:35176084,chr11:35175901,chr11:35175899,chr11:35175890 NA NA chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123314112,chr10:123314022,chr10:123313987,chr10:123313966,chr10:123302896,chr10:123314001,chr10:123314146,chr10:123302769,chr10:123302825,chr10:123302842,chr10:123302963,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303015,chr10:123303022 chr11:35197692,chr11:35197695,chr11:35197737,chr11:35166093,chr11:35197753,chr11:35197754,chr11:35197832,chr11:35197720,chr11:35197640,chr11:35197728,chr11:35197933,chr11:35197933,chr11:35197742,chr11:35197644,chr11:35197843,chr11:35197843,chr11:35197959,chr11:35197606,chr11:35197736,chr11:35197741,chr11:35197741,chr11:35197750,chr11:35197825,chr11:35197825,chr11:35197641,chr11:35197641,chr11:35197448,chr11:35197429,chr11:35197631,chr11:35197448,chr11:35197446,chr11:35197437 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Extracellular_link_domain(100%) |Xlink(100%) 0 1 1 24238 34774 ENST00000613048.4 ENST00000263398.11 upstream upstream mismatches(1) CACCGCAGGCTGAAGGCATTGCGCGTAGTCCATGCCCGTAGAGGAAGTGTGCAGATGGGATTAACGTCCACATGGAGATATGGAAGAGGACCGGGGATTGG...TTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|ATTTGAATATAACCTGCCGCTTTGCAGGTGTATTCCACGTGGAGtAAAATGGTCGtTACAGCAT...GTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAA___CTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAATACgGA FSLVEDTTLEPE|dLNITCRFAGVFHVE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17945 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35208105:+ chr11:35160429-35253949:+ chr11:35229652:+ chr10:121512626,chr10:121512663,chr10:121543311,chr10:121543328,chr10:121543449,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543501,chr10:121543508,chr10:121545036,chr10:121545036,chr10:121545051,chr10:121545080,chr10:121545080,chr10:121544901,chr10:121544901,chr10:121544944,chr10:121548264,chr10:121548265,chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121561331,chr10:121561443,chr10:121561445,chr10:121561447,chr10:121562302,chr10:121562304,chr10:121562305,chr10:121562307,chr10:121562385,chr10:121562385,chr10:121562408,chr10:121562408,chr10:121562433,chr10:121562455,chr10:121562455,chr10:121562455,chr10:121562521,chr10:121562522,chr10:121562522,chr10:121489251,chr10:121489285,chr10:121489313,chr10:121489315,chr10:121489322,chr10:121489340,chr10:121554598,chr10:121554508,chr10:121554473,chr10:121543382,chr10:121554452,chr10:121554487,chr10:121543255,chr10:121554632,chr10:121562397,chr10:121561335,chr10:121561155,chr10:121561329,chr10:121561227,chr10:121489242,chr10:121561232,chr10:121489222,chr10:121561195,chr10:121561153,chr10:121512607,chr10:121489283,chr10:121561200,chr10:121489243,chr10:121561261,chr10:121489222,chr10:121489180,chr10:121561319,chr10:121489282,chr10:121561200,chr10:121561325,chr10:121585070,chr10:121562357,chr10:121561336,chr10:121562295,chr10:121584038 chr11:35188725,chr11:35188691,chr11:35176094,chr11:35176094,chr11:35175901,chr11:35175882,chr11:35176084,chr11:35175901,chr11:35175899,chr11:35175890,chr11:35187013,chr11:35187003,chr11:35187160,chr11:35187202,chr11:35187191,chr11:35187169,chr11:35187143,chr11:35187218,chr11:35205117,chr11:35205117,chr11:35176145,chr11:35176148,chr11:35176190,chr11:35144546,chr11:35176206,chr11:35176207,chr11:35176285,chr11:35176173,chr11:35176093,chr11:35176181,chr11:35176386,chr11:35176386,chr11:35176195,chr11:35176097,chr11:35176296,chr11:35176296,chr11:35187165,chr11:35198969,chr11:35198969,chr11:35198969,chr11:35198965,chr11:35198963,chr11:35198962,chr11:35198960,chr11:35188738,chr11:35198762,chr11:35187169,chr11:35198874,chr11:35187147,chr11:35187121,chr11:35188785,chr11:35187278,chr11:35198762,chr11:35188722,chr11:35198762,chr11:35188779,chr11:35188761,chr11:35188717,chr11:35188717,chr11:35188775,chr11:35188717,chr11:35176412,chr11:35176059,chr11:35176189,chr11:35176194,chr11:35176194,chr11:35176203,chr11:35176278,chr11:35176278,chr11:35186878,chr11:35187029,chr11:35187047,chr11:35187163,chr11:35187189,chr11:35188666,chr11:35188666,chr11:35188676,chr11:35188684,chr11:35188699,chr11:35188713,chr11:35188770,chr11:35188770,chr11:35188798,chr11:35188798,chr11:35188812,chr11:35188858,chr11:35188858,chr11:35187935,chr11:35187948,chr11:35188179,chr11:35191364,chr11:35198908,chr11:35198937,chr11:35198971,chr11:35198230 NA NA chr10:123272140,chr10:123272177,chr10:123302825,chr10:123302842,chr10:123302963,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303015,chr10:123303022,chr10:123304550,chr10:123304550,chr10:123304565,chr10:123304594,chr10:123304594,chr10:123304415,chr10:123304415,chr10:123304458,chr10:123307778,chr10:123307779,chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123320845,chr10:123320957,chr10:123320959,chr10:123320961,chr10:123321816,chr10:123321818,chr10:123321819,chr10:123321821,chr10:123321899,chr10:123321899,chr10:123321922,chr10:123321922,chr10:123321947,chr10:123321969,chr10:123321969,chr10:123321969,chr10:123322035,chr10:123322036,chr10:123322036,chr10:123248765,chr10:123248799,chr10:123248827,chr10:123248829,chr10:123248836,chr10:123248854,chr10:123314112,chr10:123314022,chr10:123313987,chr10:123302896,chr10:123313966,chr10:123314001,chr10:123302769,chr10:123314146,chr10:123321911,chr10:123320849,chr10:123320669,chr10:123320843,chr10:123320741,chr10:123248756,chr10:123320746,chr10:123248736,chr10:123320709,chr10:123320667,chr10:123272121,chr10:123248797,chr10:123320714,chr10:123248757,chr10:123320775,chr10:123248736,chr10:123248694,chr10:123320833,chr10:123248796,chr10:123320714,chr10:123320839,chr10:123344584,chr10:123321871,chr10:123320850,chr10:123321809,chr10:123343552 chr11:35210272,chr11:35210238,chr11:35197641,chr11:35197641,chr11:35197448,chr11:35197429,chr11:35197631,chr11:35197448,chr11:35197446,chr11:35197437,chr11:35208560,chr11:35208550,chr11:35208707,chr11:35208749,chr11:35208738,chr11:35208716,chr11:35208690,chr11:35208765,chr11:35226664,chr11:35226664,chr11:35197692,chr11:35197695,chr11:35197737,chr11:35166093,chr11:35197753,chr11:35197754,chr11:35197832,chr11:35197720,chr11:35197640,chr11:35197728,chr11:35197933,chr11:35197933,chr11:35197742,chr11:35197644,chr11:35197843,chr11:35197843,chr11:35208712,chr11:35220516,chr11:35220516,chr11:35220516,chr11:35220512,chr11:35220510,chr11:35220509,chr11:35220507,chr11:35210285,chr11:35220309,chr11:35208716,chr11:35220421,chr11:35208694,chr11:35208668,chr11:35210332,chr11:35208825,chr11:35220309,chr11:35210269,chr11:35220309,chr11:35210326,chr11:35210308,chr11:35210264,chr11:35210264,chr11:35210322,chr11:35210264,chr11:35197959,chr11:35197606,chr11:35197736,chr11:35197741,chr11:35197741,chr11:35197750,chr11:35197825,chr11:35197825,chr11:35208425,chr11:35208576,chr11:35208594,chr11:35208710,chr11:35208736,chr11:35210213,chr11:35210213,chr11:35210223,chr11:35210231,chr11:35210246,chr11:35210260,chr11:35210317,chr11:35210317,chr11:35210345,chr11:35210345,chr11:35210359,chr11:35210405,chr11:35210405,chr11:35209482,chr11:35209495,chr11:35209726,chr11:35212911,chr11:35220455,chr11:35220484,chr11:35220518,chr11:35219777 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Extracellular_link_domain(7%) |Xlink(30%) 0 1 1 24238 56534 ENST00000613048.4 ENST00000428726.8 upstream upstream duplicates(1),mismatches(1) CACCGCAGGCTGAAGGCATTGCGCGTAGTCCATGCCCGTAGAGGAAGTGTGCAGATGGGATTAACGTCCACATGGAGATATGGAAGAGGACCGGGGATTGG...GGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|ATATGGACTCCAGTCATAGTAcAACGC...ATTTGGACAGGACAGGACCTCTTTCAATGACAACGC___AGCAGAGTAATTCTCAGAGCTTCTCTACATCACATGAAGGCTTGGAAGAAGATAAAGACCATCCA VTMATLSLARPSFSLVEDTTLEPE|dMDSSHStT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17946 FGFR2::CD44 ENSG00000066468.24::ENSG00000026508.21 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3107 TRUE 1175 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CD44 ENSG00000026508.21 protein_coding + - chr11:35138882-35232402:+ chr11:35159551:- chr11:35160429-35253949:+ chr11:35181098:- chr10:121501565,chr10:121512626,chr10:121512663,chr10:121482883,chr10:121482885,chr10:121482894,chr10:121483028,chr10:121483037,chr10:121543309,chr10:121543311,chr10:121543311,chr10:121543328,chr10:121543328,chr10:121543449,chr10:121543449,chr10:121543451,chr10:121543456,chr10:121543489,chr10:121543493,chr10:121543493,chr10:121543496,chr10:121543501,chr10:121543508,chr10:121542520,chr10:121542520,chr10:121545036,chr10:121545051,chr10:121545080,chr10:121544901,chr10:121544901,chr10:121544944,chr10:121554266,chr10:121554309,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554333,chr10:121554430,chr10:121554433,chr10:121554447,chr10:121554451,chr10:121554521,chr10:121554614,chr10:121554637,chr10:121554644,chr10:121557928,chr10:121557549,chr10:121561188,chr10:121560329,chr10:121560329,chr10:121560333,chr10:121560349,chr10:121560398,chr10:121560475,chr10:121560475,chr10:121560485,chr10:121560509,chr10:121560535,chr10:121560571,chr10:121562302,chr10:121562304,chr10:121562305,chr10:121562307,chr10:121562385,chr10:121562408,chr10:121562408,chr10:121562433,chr10:121562455,chr10:121562455,chr10:121562521,chr10:121562522,chr10:121571553,chr10:121571674,chr10:121571694,chr10:121571705,chr10:121571714,chr10:121571724,chr10:121571069,chr10:121571121,chr10:121571146,chr10:121571204,chr10:121571230,chr10:121571241,chr10:121574783,chr10:121574256,chr10:121574256,chr10:121574286,chr10:121574380,chr10:121574381,chr10:121574381,chr10:121574389,chr10:121574398,chr10:121574410,chr10:121574419,chr10:121574420,chr10:121574421,chr10:121574421,chr10:121574421,chr10:121574427,chr10:121574430,chr10:121574432,chr10:121574435,chr10:121574440,chr10:121574440,chr10:121574444,chr10:121574449,chr10:121574450,chr10:121574459,chr10:121574465,chr10:121574465,chr10:121574466,chr10:121574466,chr10:121574488,chr10:121575941,chr10:121577049,chr10:121585108,chr10:121587988,chr10:121591431,chr10:121489251,chr10:121489285,chr10:121489313,chr10:121489313,chr10:121489315,chr10:121489322,chr10:121489340,chr10:121554485,chr10:121583761,chr10:121543452,chr10:121554469,chr10:121543276,chr10:121554521,chr10:121543255,chr10:121554627,chr10:121545102,chr10:121545102,chr10:121562303,chr10:121545039,chr10:121562400,chr10:121561192,chr10:121489295,chr10:121561185,chr10:121489286,chr10:121561184,chr10:121561194,chr10:121489297,chr10:121489184,chr10:121561180,chr10:121512596,chr10:121489283,chr10:121512604,chr10:121561208,chr10:121489283,chr10:121489243,chr10:121489222,chr10:121512604,chr10:121561218,chr10:121560487,chr10:121489185,chr10:121489137,chr10:121560390,chr10:121512604,chr10:121561205,chr10:121560549,chr10:121560525,chr10:121512800,chr10:121562286,chr10:121491723,chr10:121491912,chr10:121519483,chr10:121543484,chr10:121560553,chr10:121560473,chr10:121543313,chr10:121560426,chr10:121561247,chr10:121560553,chr10:121560574,chr10:121543450,chr10:121560555,chr10:121560574,chr10:121574365,chr10:121574351,chr10:121574351,chr10:121575982,chr10:121575927,chr10:121560348,chr10:121491744,chr10:121561313,chr10:121560553,chr10:121491797,chr10:121571189,chr10:121571294,chr10:121571296,chr10:121571524,chr10:121571311,chr10:121482989,chr10:121571189,chr10:121571241,chr10:121571188 chr11:35197595,chr11:35188757,chr11:35188704,chr11:35227273,chr11:35227115,chr11:35227124,chr11:35227121,chr11:35227133,chr11:35213067,chr11:35176122,chr11:35213621,chr11:35176135,chr11:35213621,chr11:35175920,chr11:35213637,chr11:35212489,chr11:35175935,chr11:35176117,chr11:35175936,chr11:35213637,chr11:35213629,chr11:35175945,chr11:35175913,chr11:35175875,chr11:35212126,chr11:35187033,chr11:35187184,chr11:35187213,chr11:35187201,chr11:35187164,chr11:35187243,chr11:35176160,chr11:35176166,chr11:35176217,chr11:35176342,chr11:35176200,chr11:35176215,chr11:35176112,chr11:35176217,chr11:35176413,chr11:35176427,chr11:35176212,chr11:35176153,chr11:35176310,chr11:35176317,chr11:35218860,chr11:35218464,chr11:35213051,chr11:35187986,chr11:35225702,chr11:35213502,chr11:35213111,chr11:35213478,chr11:35188795,chr11:35225675,chr11:35225686,chr11:35188840,chr11:35188828,chr11:35225774,chr11:35198975,chr11:35198974,chr11:35198986,chr11:35198983,chr11:35198830,chr11:35187181,chr11:35198886,chr11:35187204,chr11:35187130,chr11:35187290,chr11:35198783,chr11:35198776,chr11:35227123,chr11:35227073,chr11:35227464,chr11:35227464,chr11:35227451,chr11:35227117,chr11:35227096,chr11:35227456,chr11:35227118,chr11:35227101,chr11:35226978,chr11:35226966,chr11:35218520,chr11:35218508,chr11:35218527,chr11:35218471,chr11:35218513,chr11:35218511,chr11:35218525,chr11:35218527,chr11:35218522,chr11:35218475,chr11:35218476,chr11:35218471,chr11:35218477,chr11:35218478,chr11:35218525,chr11:35218476,chr11:35218478,chr11:35218478,chr11:35218478,chr11:35218476,chr11:35218478,chr11:35218456,chr11:35218478,chr11:35218440,chr11:35218478,chr11:35218476,chr11:35218478,chr11:35218476,chr11:35218477,chr11:35218456,chr11:35225574,chr11:35218451,chr11:35192760,chr11:35227178,chr11:35192884,chr11:35188809,chr11:35188818,chr11:35188749,chr11:35188748,chr11:35188734,chr11:35188806,chr11:35188735,chr11:35175954,chr11:35176061,chr11:35176133,chr11:35176160,chr11:35176286,chr11:35176335,chr11:35176488,chr11:35176488,chr11:35187227,chr11:35187229,chr11:35187247,chr11:35187380,chr11:35187380,chr11:35188701,chr11:35188701,chr11:35188697,chr11:35188697,chr11:35188696,chr11:35188701,chr11:35188701,chr11:35188695,chr11:35188692,chr11:35188727,chr11:35188723,chr11:35188720,chr11:35188720,chr11:35188720,chr11:35188727,chr11:35188798,chr11:35188771,chr11:35188771,chr11:35188805,chr11:35188805,chr11:35188879,chr11:35188847,chr11:35188847,chr11:35188847,chr11:35188189,chr11:35188712,chr11:35194812,chr11:35198964,chr11:35225672,chr11:35229390,chr11:35199935,chr11:35211743,chr11:35213040,chr11:35213086,chr11:35213123,chr11:35213123,chr11:35213530,chr11:35213585,chr11:35213594,chr11:35213591,chr11:35213591,chr11:35213593,chr11:35218494,chr11:35218475,chr11:35218474,chr11:35225590,chr11:35225598,chr11:35226415,chr11:35225671,chr11:35225705,chr11:35225738,chr11:35225738,chr11:35227396,chr11:35226873,chr11:35226883,chr11:35226935,chr11:35226959,chr11:35227109,chr11:35227109,chr11:35227102,chr11:35227139 NA NA chr10:123261079,chr10:123272140,chr10:123272177,chr10:123242397,chr10:123242399,chr10:123242408,chr10:123242542,chr10:123242551,chr10:123302823,chr10:123302825,chr10:123302825,chr10:123302842,chr10:123302842,chr10:123302963,chr10:123302963,chr10:123302965,chr10:123302970,chr10:123303003,chr10:123303007,chr10:123303007,chr10:123303010,chr10:123303015,chr10:123303022,chr10:123302034,chr10:123302034,chr10:123304550,chr10:123304565,chr10:123304594,chr10:123304415,chr10:123304415,chr10:123304458,chr10:123313780,chr10:123313823,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313847,chr10:123313944,chr10:123313947,chr10:123313961,chr10:123313965,chr10:123314035,chr10:123314128,chr10:123314151,chr10:123314158,chr10:123317442,chr10:123317063,chr10:123320702,chr10:123319843,chr10:123319843,chr10:123319847,chr10:123319863,chr10:123319912,chr10:123319989,chr10:123319989,chr10:123319999,chr10:123320023,chr10:123320049,chr10:123320085,chr10:123321816,chr10:123321818,chr10:123321819,chr10:123321821,chr10:123321899,chr10:123321922,chr10:123321922,chr10:123321947,chr10:123321969,chr10:123321969,chr10:123322035,chr10:123322036,chr10:123331067,chr10:123331188,chr10:123331208,chr10:123331219,chr10:123331228,chr10:123331238,chr10:123330583,chr10:123330635,chr10:123330660,chr10:123330718,chr10:123330744,chr10:123330755,chr10:123334297,chr10:123333770,chr10:123333770,chr10:123333800,chr10:123333894,chr10:123333895,chr10:123333895,chr10:123333903,chr10:123333912,chr10:123333924,chr10:123333933,chr10:123333934,chr10:123333935,chr10:123333935,chr10:123333935,chr10:123333941,chr10:123333944,chr10:123333946,chr10:123333949,chr10:123333954,chr10:123333954,chr10:123333958,chr10:123333963,chr10:123333964,chr10:123333973,chr10:123333979,chr10:123333979,chr10:123333980,chr10:123333980,chr10:123334002,chr10:123335455,chr10:123336563,chr10:123344622,chr10:123347502,chr10:123350945,chr10:123248765,chr10:123248799,chr10:123248827,chr10:123248827,chr10:123248829,chr10:123248836,chr10:123248854,chr10:123313999,chr10:123343275,chr10:123302966,chr10:123313983,chr10:123302790,chr10:123314035,chr10:123302769,chr10:123314141,chr10:123304616,chr10:123304616,chr10:123321817,chr10:123304553,chr10:123321914,chr10:123320706,chr10:123248809,chr10:123320699,chr10:123248800,chr10:123320698,chr10:123320708,chr10:123248811,chr10:123248698,chr10:123320694,chr10:123272110,chr10:123248797,chr10:123272118,chr10:123320722,chr10:123248797,chr10:123248757,chr10:123248736,chr10:123272118,chr10:123320732,chr10:123320001,chr10:123248699,chr10:123248651,chr10:123319904,chr10:123272118,chr10:123320719,chr10:123320063,chr10:123320039,chr10:123272314,chr10:123321800,chr10:123251237,chr10:123251426,chr10:123278997,chr10:123302998,chr10:123320067,chr10:123319987,chr10:123302827,chr10:123319940,chr10:123320761,chr10:123320067,chr10:123320088,chr10:123302964,chr10:123320069,chr10:123320088,chr10:123333879,chr10:123333865,chr10:123333865,chr10:123335496,chr10:123335441,chr10:123319862,chr10:123251258,chr10:123320827,chr10:123320067,chr10:123251311,chr10:123330703,chr10:123330808,chr10:123330810,chr10:123331038,chr10:123330825,chr10:123242503,chr10:123330703,chr10:123330755,chr10:123330702 chr11:35219142,chr11:35210304,chr11:35210251,chr11:35248820,chr11:35248662,chr11:35248671,chr11:35248668,chr11:35248680,chr11:35234614,chr11:35197669,chr11:35235168,chr11:35197682,chr11:35235168,chr11:35197467,chr11:35235184,chr11:35234036,chr11:35197482,chr11:35197664,chr11:35197483,chr11:35235184,chr11:35235176,chr11:35197492,chr11:35197460,chr11:35197422,chr11:35233673,chr11:35208580,chr11:35208731,chr11:35208760,chr11:35208748,chr11:35208711,chr11:35208790,chr11:35197707,chr11:35197713,chr11:35197764,chr11:35197889,chr11:35197747,chr11:35197762,chr11:35197659,chr11:35197764,chr11:35197960,chr11:35197974,chr11:35197759,chr11:35197700,chr11:35197857,chr11:35197864,chr11:35240407,chr11:35240011,chr11:35234598,chr11:35209533,chr11:35247249,chr11:35235049,chr11:35234658,chr11:35235025,chr11:35210342,chr11:35247222,chr11:35247233,chr11:35210387,chr11:35210375,chr11:35247321,chr11:35220522,chr11:35220521,chr11:35220533,chr11:35220530,chr11:35220377,chr11:35208728,chr11:35220433,chr11:35208751,chr11:35208677,chr11:35208837,chr11:35220330,chr11:35220323,chr11:35248670,chr11:35248620,chr11:35249011,chr11:35249011,chr11:35248998,chr11:35248664,chr11:35248643,chr11:35249003,chr11:35248665,chr11:35248648,chr11:35248525,chr11:35248513,chr11:35240067,chr11:35240055,chr11:35240074,chr11:35240018,chr11:35240060,chr11:35240058,chr11:35240072,chr11:35240074,chr11:35240069,chr11:35240022,chr11:35240023,chr11:35240018,chr11:35240024,chr11:35240025,chr11:35240072,chr11:35240023,chr11:35240025,chr11:35240025,chr11:35240025,chr11:35240023,chr11:35240025,chr11:35240003,chr11:35240025,chr11:35239987,chr11:35240025,chr11:35240023,chr11:35240025,chr11:35240023,chr11:35240024,chr11:35240003,chr11:35247121,chr11:35239998,chr11:35214307,chr11:35248725,chr11:35214431,chr11:35210356,chr11:35210365,chr11:35210296,chr11:35210295,chr11:35210281,chr11:35210353,chr11:35210282,chr11:35197501,chr11:35197608,chr11:35197680,chr11:35197707,chr11:35197833,chr11:35197882,chr11:35198035,chr11:35198035,chr11:35208774,chr11:35208776,chr11:35208794,chr11:35208927,chr11:35208927,chr11:35210248,chr11:35210248,chr11:35210244,chr11:35210244,chr11:35210243,chr11:35210248,chr11:35210248,chr11:35210242,chr11:35210239,chr11:35210274,chr11:35210270,chr11:35210267,chr11:35210267,chr11:35210267,chr11:35210274,chr11:35210345,chr11:35210318,chr11:35210318,chr11:35210352,chr11:35210352,chr11:35210426,chr11:35210394,chr11:35210394,chr11:35210394,chr11:35209736,chr11:35210259,chr11:35216359,chr11:35220511,chr11:35247219,chr11:35250937,chr11:35221482,chr11:35233290,chr11:35234587,chr11:35234633,chr11:35234670,chr11:35234670,chr11:35235077,chr11:35235132,chr11:35235141,chr11:35235138,chr11:35235138,chr11:35235140,chr11:35240041,chr11:35240022,chr11:35240021,chr11:35247137,chr11:35247145,chr11:35247962,chr11:35247218,chr11:35247252,chr11:35247285,chr11:35247285,chr11:35248943,chr11:35248420,chr11:35248430,chr11:35248482,chr11:35248506,chr11:35248656,chr11:35248656,chr11:35248649,chr11:35248686 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' low none none none 2 1 1 24238 16 ENST00000613048.4 unknown upstream downstream none AACACAGGTCGCGGAGGAGCGTTGCCATTCAAG___TGACTGCAGCAGCAGCGGCAGCGCCTCGGTTCCTGAGCCCACCGCAGGCTGAAGGCATTGCGCGTAGT...CTGGGGTCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|GAAGATGAAACCTTGGATGACTGGCCCCAGTCTTCCCCGCTGCAAAGGGGTCTCATAGTTTCTAATTTATGATGTGTTTGCACCATGAAAAAATCATCTGCACTTTGATAATCTGCTCTTTCATCTCAAACAACAGTCCAAAA WGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|gr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17947 FOCAD::HACD4 ENSG00000188352.13::ENSG00000188921.14 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20944774:+ chr9:20658308-20995954:+ chr9:20944773:+ HACD4 ENSG00000188921.14 protein_coding - + chr9:20999509-21031640:- chr9:21010223:+ chr9:20999508-21031639:- chr9:21010222:+ chr9:20946230,chr9:20946229 chr9:21007901,chr9:21007897 NA NA chr9:20946229,chr9:20946228 chr9:21007900,chr9:21007896 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Focadhesin/RST1__DUF3730(100%)| DUF3730(100%)| 1 3 6 30 7 ENST00000380249.5 unknown downstream upstream duplicates(1) CGGCTTTGTCTCTCCTTGTGCCAGTTTTCATTATCTCTTGCAAAGAGAAGGTTGAGGAAATCCTGAACATGCTGACTGCCAGGTTACCTGGGAAACCAAGT...CTGCTTTGACACTAGTCTTGAATACAA___CACGGGCTGTATATTGGGAGTTGGACTTGTTCTGTCCCTCATGAGCCACAGCAGCCAAATGCAGTCCCGCGTTCACGTAGCAGCATTGCTCCGGAAGCTGTCTGCGCACGTAGATGACAGCGGGAGCCAGAGCAGAACGTTTCAGGAG|AATGCTCCTTACCAGTCTACCAAATCCATTGCAGAAGAAAGCATATATTCTCCAAATATCCTCAAGCTCTGCTGACTGATGATCTGAATGATTTGATCTTAAGTTTTAGGTTTATATTTAGGCTATATAATTAGCCTACTCATACTCAATAATTCATTCTGTGTTCATTGAGCATGTATACTGGTGCATAAAAGAGAGGAAGGAAGCAAAGAAACAGACTCAGACATCCTGGTACCCCCCCC...TAAGAACAAAATAATTATACAACTCACCATAATGCAGAATCAGTGGGAGCCCTGAGCTTATTTTCCTGCAACTAGATGGTTTCATCTGGGGGTGATGGGAG CFDTSLEYNTGCILGVGLVLSLMSHSSQMQSRVHVAALLRKLSAHVDDSGSQSRTFQE|napyqstksiaeesiyspnilklc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-491 chr9:20716105-20716188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17951 PDHX::SLC1A2 ENSG00000110435.13::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34931484:+ chr11:34937376-35042138:+ chr11:34953031:+ SLC1A2 ENSG00000110436.13 protein_coding - + chr11:35251205-35420063:- chr11:35388420:+ chr11:35272752-35441610:- chr11:35409967:+ chr11:34991401,chr11:35004190,chr11:35008885,chr11:35009079,chr11:35011507,chr11:35010689,chr11:35010678,chr11:34972580,chr11:34972580,chr11:34967041,chr11:35009095,chr11:35009113,chr11:34972576,chr11:34972574,chr11:34974696 chr11:35376364,chr11:35301736,chr11:35311290,chr11:35311310,chr11:35277388,chr11:35278796,chr11:35278796,chr11:35258794,chr11:35258815,chr11:35260275,chr11:35311378,chr11:35311395,chr11:35258794,chr11:35258790,chr11:35291480 NA NA chr11:35012948,chr11:35025737,chr11:35030432,chr11:35030626,chr11:35033054,chr11:35032236,chr11:35032225,chr11:34994127,chr11:34994127,chr11:34988588,chr11:35030642,chr11:35030660,chr11:34994123,chr11:34994121,chr11:34996243 chr11:35397911,chr11:35323283,chr11:35332837,chr11:35332857,chr11:35298935,chr11:35300343,chr11:35300343,chr11:35280341,chr11:35280362,chr11:35281822,chr11:35332925,chr11:35332942,chr11:35280341,chr11:35280337,chr11:35313027 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Biotin-requiring_enzyme(20%)| Biotin_lipoyl(21%)| 2 1 4 14747 13 ENST00000227868.9 unknown downstream upstream duplicates(1),mismappers(1) GCTGGGCTGTGATCCGCGGCTGCTGCGTTATCTTGTGGGCTTCCCtGGCCGCCGAAGCGTAGGGCTGGTGAAGGGGGCTCTTGGGTGGTCTGTAAGCCGCGGAGCTAATTGGAGATGGTTTCACAGCACGCAGTGGCTTCGGG___GTGATCCCATTAAGATACTAATGCCATCACTGTCTCCTACAATGGAAGAAGGAAACATTGTGAAATGGCTGAAAAAGGAAG|GGTCTCACTCTGTTGCCCAGACTGGAGTACAGTGGTGTGATCACAGCTCACTGCAACCTTGACCTCCCAGGCTCAAGCCATCCTCCTGCCCCAATCTCCAAGTAGCTGGGACTACAG___TGTGGCTACAAGAAAATCTAGTATTCTATCTGTGGCCTCTGCTATATTTCTGTT LGCDPRLLRYLVGFPGRRSVGLVKGALGWSVSRGANWRWFHSTQWLRGDPIKILMPSLSPTMEEGNIVKWLKKE|gshsvaqtgvqwcdhsslqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17958 PDHX::APIP ENSG00000110435.13::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3110 TRUE 1176 PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34984728:+ chr11:34937376-35042138:+ chr11:35006275:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site CDS/splice-site inversion medium none 2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(62%),Biotin-requiring_enzyme(100%),e3_binding_domain(100%)|Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) 2-oxoacid_dh(78%),Biotin_lipoyl(100%),E3_binding(100%)|Aldolase_II(100%) 0 1 5 10356 25033 ENST00000448838.8 ENST00000395787.4 downstream downstream duplicates(4),mismatches(1) ATCTGGTCAAAG___ATGACATTAAAGTATCAGTAAATGATTTTATCATCAAGGCAGCAGCTGTTACCCTTAAA___CAAATGCCAGATGTTAATGTAAGCTGGGAT...GCAACAGATAAgGGCTTAtTTtCTCCAATCATttAAGATGCTGCTGCTAAAGGTATCCAGGAAATTGCTGACTCTGTAAAG|GACAAGGAGCATCCAAGATACCTGATCCCAGAACTTTGCAAACAGTTTTACCATTTAGGCTGGGTCACTGGGACTGGAGGAGGAATTAGCTTGAAG...CTCTTTTCATGAATGCTTACACAATGAGAG___GAGCAGGTGCAGTGATTCATACCCACTCTAAAGCTGCTGTGATGGCCACcCTTCTCTTTCCAGGACGGGAG...CCTGAGGAGAAAGACCTCAAAGATAGAATGGCTCATGCAATGAATGAATACCCAGACTCCTGTGCAGTACTGGTCAGACGTCATGGAGTATATGTGcGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17959 PDHX::APIP ENSG00000110435.13::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3110 TRUE 1176 PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34960518:+ chr11:34937376-35042138:+ chr11:34982065:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none 2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(0%),Biotin-requiring_enzyme(93%),e3_binding_domain(90%)|Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) 2-oxoacid_dh(27%),Biotin_lipoyl(64%),E3_binding(1%)|Aldolase_II(100%) 0 1 3 10475 25033 ENST00000448838.8 ENST00000395787.4 downstream downstream duplicates(3) CTGCCCGCAATATTCTGGAAAAACACTCACTGGATGCTAGCCAGGGCACAGCCACTGGCCCTCGGGGGATATTCACTAAAGA|GACAAGGAGCATCCAAGATACCTGATCCCAGAACTTTGCAAACAGTTTTACCATTTAGGCTGGGTCACTGGGACTGGAGGAGGAATTAGCTTGAAG...AGACATGTTTGTTTaTGATATAAATGAAAAGGACATAAGTGGACCTTCGCCATCGAAGAAGCTAAAAAAAAGCCAGTGTACTCCTCTTTTCATGAATGCT ARNILEKHSLDASQGTATGPRGIFTKe|trsiqdt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17960 PDHX::APIP ENSG00000110435.13::ENSG00000149089.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3110 TRUE 1176 PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34947606:+ chr11:34937376-35042138:+ chr11:34969153:+ APIP ENSG00000149089.13 protein_coding - - chr11:34853094-34916379:- chr11:34895110:- chr11:34874641-34937926:- chr11:34916657:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none 2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(0%),Biotin-requiring_enzyme(80%)|Class_II_Aldolase_and_Adducin_N-terminal_domain(100%) 2-oxoacid_dh(0%),Biotin_lipoyl(45%)|Aldolase_II(100%) 1 0 2 16001 25033 ENST00000227868.9 ENST00000395787.4 downstream downstream duplicates(2) CTGTGATCCGCGGCTGCTGCGTTATCTTGTGGGCTTCCCtGGCCGCCGAAGCGTAGGGCTGGTGAAGGGGGCTCTTGGGTGGTCTGTAAGCCGCGGAGCTA...GAAACATTGTGAAATGGCTGAAAAAGGAAG___GTGAAGCGGTGAGTGCTGGAGATGCATTATGTGAAATTGAGACTGACAAAGCTGTGGTTACCTTAGATGCAAGTGATGATGGAATCTTGGCCAAAATCGTG|GACAAGGAGCATCCAAGATACCTGATCCCAGAACTTTGCAAACAGTTTTACCATTTAGGCTGGGTCACTGGGACTGGAGGAGGAATTAGCTTGAAG NIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV|DKEHPRYLIPELCKQFYHLGWVTGTGGGISL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17965 PVT1::ENSG00000253530 ENSG00000249859.14::ENSG00000253530.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3111 TRUE 1177 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000253530 ENSG00000253530.2 lncRNA + + chr8:126506326-126522360:+ chr8:126520900:+ chr8:127518571-127534605:+ chr8:127533145:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 3 0 0 4484 15 ENST00000667305.1 ENST00000664111.1 downstream upstream mismatches(1) CCCCGCGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCACATAGGAGAGTGATCAGCATATCTTGGGAGCACAGTAGACACAGGTTAAGGAGATCCCCTGCCTGCAGTGTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17966 PVT1::ENSG00000253530 ENSG00000249859.14::ENSG00000253530.2 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3111 TRUE 1177 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000253530 ENSG00000253530.2 lncRNA + + chr8:126506326-126522360:+ chr8:126520900:+ chr8:127518571-127534605:+ chr8:127533145:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 0 889 15 ENST00000662410.1 ENST00000664111.1 downstream upstream mismatches(1) GGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTCACATAGGAGAGTGATCAGCATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17967 PVT1::FGFR2 ENSG00000249859.14::ENSG00000066468.24 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3112 TRUE 1178 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551459:- chr10:123237846-123357972:- chr10:123310973:- chr8:127913024,chr8:127925956,chr8:127925806,chr8:127934000,chr8:127936033,chr8:127936200,chr8:127936209,chr8:127936306,chr8:127956609,chr8:128004938,chr8:128005028,chr8:127872381,chr8:127935244,chr8:127872282,chr8:127872282,chr8:127936121,chr8:127872059,chr8:127872383,chr8:127935247,chr8:127872173,chr8:127872213,chr8:127935248,chr8:127872217,chr8:127936163,chr8:127872041,chr8:127872280,chr8:127935254,chr8:127872282,chr8:127936208,chr8:127872282,chr8:127872282,chr8:127925917,chr8:127935242,chr8:127869321,chr8:127936343,chr8:127869422,chr8:127925844,chr8:127869372,chr8:127869373,chr8:127925753,chr8:127936069,chr8:127936060,chr8:127936060,chr8:127936060,chr8:127936069,chr8:127935254,chr8:127935253,chr8:127869418,chr8:127936298,chr8:127935223,chr8:127936304,chr8:127935228,chr8:127936304,chr8:127935212,chr8:127925846,chr8:127936257,chr8:127936286,chr8:127869380,chr8:127925882,chr8:127935207,chr8:127869372,chr8:127935211,chr8:127925849,chr8:127936272,chr8:127869363,chr8:127869320,chr8:127936272,chr8:127925805,chr8:127925831,chr8:127936242,chr8:127869321,chr8:127925882,chr8:127869373,chr8:128015326,chr8:128015742,chr8:128015617,chr8:128015714,chr8:128015750,chr8:128015723,chr8:128015749,chr8:128015601,chr8:128015723,chr8:127933745,chr8:127816489,chr8:127816514,chr8:127956653,chr8:127956616,chr8:127841852,chr8:127956653,chr8:127956653,chr8:127956611,chr8:127956596,chr8:127841959,chr8:127956596,chr8:127841837,chr8:127841944,chr8:127956728,chr8:127841517,chr8:127956900,chr8:127956564,chr8:127841807,chr8:127956725,chr8:127956594,chr8:127956728,chr8:127956599,chr8:127956601,chr8:127956482,chr8:127841947,chr8:127841510,chr8:127841970,chr8:127841916,chr8:127841498,chr8:127913140,chr8:127913074,chr8:127913070,chr8:127913073,chr8:128004906,chr8:128005040,chr8:128005060,chr8:128005065,chr8:128004990,chr8:128005057,chr8:128005111,chr8:128004895,chr8:128004904,chr8:127795888,chr8:127841485,chr8:127841922,chr8:127869382,chr8:127869512,chr8:127869861,chr8:127872022 chr10:121575687,chr10:121561236,chr10:121561279,chr10:121563623,chr10:121560645,chr10:121561281,chr10:121561281,chr10:121560380,chr10:121571821,chr10:121582219,chr10:121582559,chr10:121558805,chr10:121558830,chr10:121558876,chr10:121558845,chr10:121558490,chr10:121558490,chr10:121558611,chr10:121558672,chr10:121558672,chr10:121558624,chr10:121558672,chr10:121558658,chr10:121558700,chr10:121558712,chr10:121558742,chr10:121558683,chr10:121558677,chr10:121558731,chr10:121558739,chr10:121558740,chr10:121560358,chr10:121560358,chr10:121560442,chr10:121560490,chr10:121560490,chr10:121560470,chr10:121560524,chr10:121560524,chr10:121560551,chr10:121560571,chr10:121560617,chr10:121560616,chr10:121560615,chr10:121560615,chr10:121561152,chr10:121561157,chr10:121561157,chr10:121561198,chr10:121561187,chr10:121561187,chr10:121561182,chr10:121561191,chr10:121561223,chr10:121561239,chr10:121561239,chr10:121561210,chr10:121561195,chr10:121561255,chr10:121561255,chr10:121561255,chr10:121561255,chr10:121561214,chr10:121561214,chr10:121561257,chr10:121561239,chr10:121561213,chr10:121561271,chr10:121561254,chr10:121561254,chr10:121561254,chr10:121560382,chr10:121560382,chr10:121563018,chr10:121563035,chr10:121563045,chr10:121563156,chr10:121563155,chr10:121563282,chr10:121563298,chr10:121563288,chr10:121563368,chr10:121563808,chr10:121568643,chr10:121568643,chr10:121571790,chr10:121571831,chr10:121571831,chr10:121571788,chr10:121571779,chr10:121571836,chr10:121571883,chr10:121571864,chr10:121571886,chr10:121571886,chr10:121572111,chr10:121572088,chr10:121572078,chr10:121572152,chr10:121572230,chr10:121572230,chr10:121572212,chr10:121572234,chr10:121572233,chr10:121572229,chr10:121572227,chr10:121571465,chr10:121571605,chr10:121571722,chr10:121571717,chr10:121571726,chr10:121571739,chr10:121575907,chr10:121575969,chr10:121575968,chr10:121575969,chr10:121582544,chr10:121582675,chr10:121582671,chr10:121582669,chr10:121582673,chr10:121582027,chr10:121582112,chr10:121582152,chr10:121582186,chr10:121590929,chr10:121572121,chr10:121571778,chr10:121561192,chr10:121560530,chr10:121560570,chr10:121558695 NA NA chr8:128925270,chr8:128938202,chr8:128938052,chr8:128946246,chr8:128948279,chr8:128948446,chr8:128948455,chr8:128948552,chr8:128968855,chr8:129017184,chr8:129017274,chr8:128884627,chr8:128947490,chr8:128884528,chr8:128884528,chr8:128948367,chr8:128884305,chr8:128884629,chr8:128947493,chr8:128884419,chr8:128884459,chr8:128947494,chr8:128884463,chr8:128948409,chr8:128884287,chr8:128884526,chr8:128947500,chr8:128884528,chr8:128948454,chr8:128884528,chr8:128884528,chr8:128938163,chr8:128947488,chr8:128881567,chr8:128948589,chr8:128881668,chr8:128938090,chr8:128881618,chr8:128881619,chr8:128937999,chr8:128948315,chr8:128948306,chr8:128948306,chr8:128948306,chr8:128948315,chr8:128947500,chr8:128947499,chr8:128881664,chr8:128948544,chr8:128947469,chr8:128948550,chr8:128947474,chr8:128948550,chr8:128947458,chr8:128938092,chr8:128948503,chr8:128948532,chr8:128881626,chr8:128938128,chr8:128947453,chr8:128881618,chr8:128947457,chr8:128938095,chr8:128948518,chr8:128881609,chr8:128881566,chr8:128948518,chr8:128938051,chr8:128938077,chr8:128948488,chr8:128881567,chr8:128938128,chr8:128881619,chr8:129027572,chr8:129027988,chr8:129027863,chr8:129027960,chr8:129027996,chr8:129027969,chr8:129027995,chr8:129027847,chr8:129027969,chr8:128945991,chr8:128828735,chr8:128828760,chr8:128968899,chr8:128968862,chr8:128854098,chr8:128968899,chr8:128968899,chr8:128968857,chr8:128968842,chr8:128854205,chr8:128968842,chr8:128854083,chr8:128854190,chr8:128968974,chr8:128853763,chr8:128969146,chr8:128968810,chr8:128854053,chr8:128968971,chr8:128968840,chr8:128968974,chr8:128968845,chr8:128968847,chr8:128968728,chr8:128854193,chr8:128853756,chr8:128854216,chr8:128854162,chr8:128853744,chr8:128925386,chr8:128925320,chr8:128925316,chr8:128925319,chr8:129017152,chr8:129017286,chr8:129017306,chr8:129017311,chr8:129017236,chr8:129017303,chr8:129017357,chr8:129017141,chr8:129017150,chr8:128808134,chr8:128853731,chr8:128854168,chr8:128881628,chr8:128881758,chr8:128882107,chr8:128884268 chr10:123335201,chr10:123320750,chr10:123320793,chr10:123323137,chr10:123320159,chr10:123320795,chr10:123320795,chr10:123319894,chr10:123331335,chr10:123341733,chr10:123342073,chr10:123318319,chr10:123318344,chr10:123318390,chr10:123318359,chr10:123318004,chr10:123318004,chr10:123318125,chr10:123318186,chr10:123318186,chr10:123318138,chr10:123318186,chr10:123318172,chr10:123318214,chr10:123318226,chr10:123318256,chr10:123318197,chr10:123318191,chr10:123318245,chr10:123318253,chr10:123318254,chr10:123319872,chr10:123319872,chr10:123319956,chr10:123320004,chr10:123320004,chr10:123319984,chr10:123320038,chr10:123320038,chr10:123320065,chr10:123320085,chr10:123320131,chr10:123320130,chr10:123320129,chr10:123320129,chr10:123320666,chr10:123320671,chr10:123320671,chr10:123320712,chr10:123320701,chr10:123320701,chr10:123320696,chr10:123320705,chr10:123320737,chr10:123320753,chr10:123320753,chr10:123320724,chr10:123320709,chr10:123320769,chr10:123320769,chr10:123320769,chr10:123320769,chr10:123320728,chr10:123320728,chr10:123320771,chr10:123320753,chr10:123320727,chr10:123320785,chr10:123320768,chr10:123320768,chr10:123320768,chr10:123319896,chr10:123319896,chr10:123322532,chr10:123322549,chr10:123322559,chr10:123322670,chr10:123322669,chr10:123322796,chr10:123322812,chr10:123322802,chr10:123322882,chr10:123323322,chr10:123328157,chr10:123328157,chr10:123331304,chr10:123331345,chr10:123331345,chr10:123331302,chr10:123331293,chr10:123331350,chr10:123331397,chr10:123331378,chr10:123331400,chr10:123331400,chr10:123331625,chr10:123331602,chr10:123331592,chr10:123331666,chr10:123331744,chr10:123331744,chr10:123331726,chr10:123331748,chr10:123331747,chr10:123331743,chr10:123331741,chr10:123330979,chr10:123331119,chr10:123331236,chr10:123331231,chr10:123331240,chr10:123331253,chr10:123335421,chr10:123335483,chr10:123335482,chr10:123335483,chr10:123342058,chr10:123342189,chr10:123342185,chr10:123342183,chr10:123342187,chr10:123341541,chr10:123341626,chr10:123341666,chr10:123341700,chr10:123350443,chr10:123331635,chr10:123331292,chr10:123320706,chr10:123320044,chr10:123320084,chr10:123318209 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Immunoglobulin_I-set_domain(100%),NA(100%),Protein_kinase_domain(100%) |I-set(99%),Ig_2(100%),Ig_3(98%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(100%) 1 0 1 4484 11900 ENST00000651587.1 ENST00000613048.4 downstream downstream none CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACC...CAGATCTGCCCTCCA|GAGCACCATACTGGACCAACACAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation 17968 PVT1::FGFR2 ENSG00000249859.14::ENSG00000066468.24 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3112 TRUE 1178 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121565704:- chr10:123237846-123357972:- chr10:123325218:- chr8:128004938,chr8:128005028,chr8:127956653,chr8:127956616,chr8:127956653,chr8:127956653,chr8:127956611,chr8:127956596,chr8:127956596,chr8:127956728,chr8:127956482,chr8:127913140,chr8:127913074,chr8:127913070,chr8:127913073,chr8:128004906,chr8:128005040,chr8:128005060,chr8:128005065,chr8:128004990,chr8:128005057,chr8:128005111,chr8:128004895,chr8:128004904,chr8:127913024,chr8:127956535,chr8:127956609 chr10:121582219,chr10:121582559,chr10:121571790,chr10:121571831,chr10:121571788,chr10:121571779,chr10:121571836,chr10:121571883,chr10:121571886,chr10:121572088,chr10:121571465,chr10:121575907,chr10:121575969,chr10:121575968,chr10:121575969,chr10:121582544,chr10:121582675,chr10:121582671,chr10:121582669,chr10:121582673,chr10:121582027,chr10:121582112,chr10:121582152,chr10:121582186,chr10:121575687,chr10:121571747,chr10:121571821 NA NA chr8:129017184,chr8:129017274,chr8:128968899,chr8:128968862,chr8:128968899,chr8:128968899,chr8:128968857,chr8:128968842,chr8:128968842,chr8:128968974,chr8:128968728,chr8:128925386,chr8:128925320,chr8:128925316,chr8:128925319,chr8:129017152,chr8:129017286,chr8:129017306,chr8:129017311,chr8:129017236,chr8:129017303,chr8:129017357,chr8:129017141,chr8:129017150,chr8:128925270,chr8:128968781,chr8:128968855 chr10:123341733,chr10:123342073,chr10:123331304,chr10:123331345,chr10:123331302,chr10:123331293,chr10:123331350,chr10:123331397,chr10:123331400,chr10:123331602,chr10:123330979,chr10:123335421,chr10:123335483,chr10:123335482,chr10:123335483,chr10:123342058,chr10:123342189,chr10:123342185,chr10:123342183,chr10:123342187,chr10:123341541,chr10:123341626,chr10:123341666,chr10:123341700,chr10:123335201,chr10:123331261,chr10:123331335 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),ig(100%) 1 0 1 181 17930 ENST00000521122.2 ENST00000358487.10 downstream downstream none GATACTGACTCAGAGGCACAGAGTTAGAAAGCAGCATGTCTGGGATTTGACCCCAGACCTGTCTGACTCAGTTTACTATTTTAAACTACCCGATTCAAGTT...GAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGgTGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|AGCCACCAACCAAATACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation 17969 PVT1::WDR11 ENSG00000249859.14::ENSG00000120008.16 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3113 TRUE 1179 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ WDR11 ENSG00000120008.16 protein_coding + + chr10:120851305-120909524:+ chr10:120883780:+ chr10:122610817-122669036:+ chr10:122643292:+ chr8:128187027,chr8:128187051,chr8:127843206,chr8:127843653,chr8:127843162,chr8:127843162,chr8:128024516,chr8:127843244,chr8:127843244,chr8:127843696,chr8:128003162,chr8:128024570,chr8:128024571 chr10:120853529,chr10:120853574,chr10:120868168,chr10:120868253,chr10:120868262,chr10:120868263,chr10:120877543,chr10:120868214,chr10:120868231,chr10:120868188,chr10:120875681,chr10:120877571,chr10:120877571 NA NA chr8:129199273,chr8:129199297,chr8:128855452,chr8:128855899,chr8:128855408,chr8:128855408,chr8:129036762,chr8:128855490,chr8:128855490,chr8:128855942,chr8:129015408,chr8:129036816,chr8:129036817 chr10:122613041,chr10:122613086,chr10:122627680,chr10:122627765,chr10:122627774,chr10:122627775,chr10:122637055,chr10:122627726,chr10:122627743,chr10:122627700,chr10:122635193,chr10:122637083,chr10:122637083 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 0 1 1 4484 14422 ENST00000651587.1 ENST00000263461.11 downstream upstream none GCCGAGCACATGGGCCCGaGGGCCGGGCGGGCTCGGGGCcGCCGGGACGAGGAGGGGCGACGACGAGCTGaGAcCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCAGTATTTGGCAG...GTATTGTTGAATCATCTGTGATCAG___CTTGCTGCAGGAGGCAGAAAGTAAATCTGAACTTAGTCAGAACATCTCTGCCCGGGAACATTTTGTATTTACCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17970 PVT1::WDR11 ENSG00000249859.14::ENSG00000120008.16 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3113 TRUE 1179 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ WDR11 ENSG00000120008.16 protein_coding + + chr10:120851305-120909524:+ chr10:120883780:+ chr10:122610817-122669036:+ chr10:122643292:+ chr8:128187027,chr8:128187051,chr8:127843206,chr8:127843653,chr8:127843162,chr8:127843162,chr8:128024516,chr8:127843244,chr8:127843244,chr8:127843696,chr8:128003162,chr8:128024570,chr8:128024571 chr10:120853529,chr10:120853574,chr10:120868168,chr10:120868253,chr10:120868262,chr10:120868263,chr10:120877543,chr10:120868214,chr10:120868231,chr10:120868188,chr10:120875681,chr10:120877571,chr10:120877571 NA NA chr8:129199273,chr8:129199297,chr8:128855452,chr8:128855899,chr8:128855408,chr8:128855408,chr8:129036762,chr8:128855490,chr8:128855490,chr8:128855942,chr8:129015408,chr8:129036816,chr8:129036817 chr10:122613041,chr10:122613086,chr10:122627680,chr10:122627765,chr10:122627774,chr10:122627775,chr10:122637055,chr10:122627726,chr10:122627743,chr10:122627700,chr10:122635193,chr10:122637083,chr10:122637083 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 0 1 1 889 14422 ENST00000662410.1 ENST00000263461.11 downstream upstream none CAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GCAGTATTTGGCcGTCGTATTCAGAGA...CGTCAGATAAAGTGATCTTGGCCTCAGATGATGGGTGCATCAGAGTCCTAGAGATGTCTATGAAGTCTGCGTGCTTTAGAATGGATGAACAAGAGTTAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17971 FGFR2::PDHX ENSG00000066468.24::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3114 TRUE 1180 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34931404:+ chr11:34937376-35042138:+ chr11:34952951:+ chr10:121569321,chr10:121569333 chr11:34929438,chr11:34929437 NA NA chr10:123328835,chr10:123328847 chr11:34950985,chr11:34950984 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(100%),Biotin-requiring_enzyme(100%),e3_binding_domain(100%) |2-oxoacid_dh(100%),Biotin_lipoyl(78%),E3_binding(100%) 0 1 1 24238 16074 ENST00000613048.4 ENST00000227868.9 upstream upstream mismatches(2) GGGGATTGGTACCGTAACCATGGTCcGCTGGGGcCGTTTCATCTGCCTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|GTGATCCCATTAAGATACTAATGCCATCACTGTCTCCTACAATGGAAGAAGGAAACATTGTGAAATGGCTGAAAAAGGAAG___GTGAAGCGGTGAGTGCTGGAGATGCATTATGTGAAATTGAG MVrWGRFICLVVVTMATLSLARPSFSLVEDTTLEPE|gDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA TRUE TRUE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17972 FGFR2::PDHX ENSG00000066468.24::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3114 TRUE 1180 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121500826:- chr10:123237846-123357972:- chr10:123260340:- PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34992315:+ chr11:34937376-35042138:+ chr11:35013862:+ chr10:121490378,chr10:121490246,chr10:121497130,chr10:121490352,chr10:121490260,chr10:121497147 chr11:34985254,chr11:34985339,chr11:34988575,chr11:34985248,chr11:34985228,chr11:34988561 NA NA chr10:123249892,chr10:123249760,chr10:123256644,chr10:123249866,chr10:123249774,chr10:123256661 chr11:35006801,chr11:35006886,chr11:35010122,chr11:35006795,chr11:35006775,chr11:35010108 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),NA(100%),Protein_kinase_domain(14%)|2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(37%) I-set(100%),Ig_2(100%),Ig_3(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%),ig(100%)|2-oxoacid_dh(5%) 0 1 0 25257 11351 ENST00000613048.4 ENST00000448838.8 upstream upstream duplicates(1),mismatches(2) CTTTGGGCAAGTGGTCATGGCGGAAGCAGTGGGAATTGACAAAGACAAGCCCAAGGAGGCGGTCACCGTGGCCGTGAAGATGTTGAAAG|GCTCTATCAAAG...TTTCCAACTTGGGGATGTTTGGCATCGACGAATTTACTGCAGTGATTAACCCTCCTCAGGCCTGCATTTTGGCGGTTGGGAGGTTCCGACCTGTGCTGAAG FGQVVMAEAVGIDKDKPKEAVTVAVKMLK|gsik NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 17973 PDHX::PCAT1 ENSG00000110435.13::ENSG00000253438.5 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34960518:+ chr11:34937376-35042138:+ chr11:34982065:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr11:35004876,chr11:35004847,chr11:35004880,chr11:35004997,chr11:35004957,chr11:35004957,chr11:35004970,chr11:35004956,chr11:35004993,chr11:35004990,chr11:35004975,chr11:35005002,chr11:35005014,chr11:35005048,chr11:35005044,chr11:35005124,chr11:35004190,chr11:35004427,chr11:35020214,chr11:34969546,chr11:34969504,chr11:35012978,chr11:34986143,chr11:35004758,chr11:35004781,chr11:35004814,chr11:35004866,chr11:35004866,chr11:35004991,chr11:35004959,chr11:35004970,chr11:35005016,chr11:35005017,chr11:34982714 chr8:127373311,chr8:127373309,chr8:127373342,chr8:127373460,chr8:127373377,chr8:127373331,chr8:127373433,chr8:127373424,chr8:127373457,chr8:127373465,chr8:127373465,chr8:127373465,chr8:127373480,chr8:127373511,chr8:127243306,chr8:127373293,chr8:127373317,chr8:127373456,chr8:126576936,chr8:127278015,chr8:127278062,chr8:127310829,chr8:127329511,chr8:127373217,chr8:127373242,chr8:127373273,chr8:127373325,chr8:127373330,chr8:127373378,chr8:127373419,chr8:127373434,chr8:127373476,chr8:127373478,chr8:127374047 NA NA chr11:35026423,chr11:35026394,chr11:35026427,chr11:35026544,chr11:35026504,chr11:35026504,chr11:35026517,chr11:35026503,chr11:35026540,chr11:35026537,chr11:35026522,chr11:35026549,chr11:35026561,chr11:35026595,chr11:35026591,chr11:35026671,chr11:35025737,chr11:35025974,chr11:35041761,chr11:34991093,chr11:34991051,chr11:35034525,chr11:35007690,chr11:35026305,chr11:35026328,chr11:35026361,chr11:35026413,chr11:35026413,chr11:35026538,chr11:35026506,chr11:35026517,chr11:35026563,chr11:35026564,chr11:35004261 chr8:128385557,chr8:128385555,chr8:128385588,chr8:128385706,chr8:128385623,chr8:128385577,chr8:128385679,chr8:128385670,chr8:128385703,chr8:128385711,chr8:128385711,chr8:128385711,chr8:128385726,chr8:128385757,chr8:128255551,chr8:128385539,chr8:128385563,chr8:128385702,chr8:127589181,chr8:128290260,chr8:128290307,chr8:128323074,chr8:128341756,chr8:128385463,chr8:128385488,chr8:128385519,chr8:128385571,chr8:128385576,chr8:128385624,chr8:128385665,chr8:128385680,chr8:128385722,chr8:128385724,chr8:128386293 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none 2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(0%),Biotin-requiring_enzyme(93%),e3_binding_domain(90%)| 2-oxoacid_dh(27%),Biotin_lipoyl(64%),E3_binding(1%)| 1 0 1 10475 217 ENST00000448838.8 ENST00000521586.2 downstream upstream none CCACCACCAGTTTCAAAACCTTCAGAGCCTCGCCCCTCACCAGAACCACAGATTTCCATCCCTGTCAAGAAGGAACACATACCCGGGACACTACG___GTTCCG...ATTCTGGAAAAACACTCACTGGATGCTAGCCAGGGCACAGCCACTGGCCCTCGGGGGATATTCACTAAAGA|CTGAACCATCACATTCCTTATACAGAGTGG ILEKHSLDASQGTATGPRGIFTKd|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1343 chr11:34941837-34941920:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17974 PCAT1::PDHX ENSG00000253438.5::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3115 TRUE 1181 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126557931:+ chr8:127568568-128431295:+ chr8:127570176:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34984570:+ chr11:34937376-35042138:+ chr11:35006117:+ chr8:127278331,chr8:126577475,chr8:126577565 chr11:34969368,chr11:34929428,chr11:34929361 NA NA chr8:128290576,chr8:127589720,chr8:127589810 chr11:34990915,chr11:34950975,chr11:34950908 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(75%),Biotin-requiring_enzyme(6%) |2-oxoacid_dh(22%),Biotin_lipoyl(0%) 0 2 0 595 10173 ENST00000645463.1 ENST00000448838.8 downstream upstream none GAACAAGCGAGGATCTCAGAGCGCGACCTGGACAG|CAAATGCCAGATGTTAATGTAAGCTGGGATGGAGAGGGCCCAAAGCAACTGCCATTTATTGACATTTCAGTGG...CTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAGGATCTTTTAG___TATTTCCAACTTGGGGATGTTTGGCATCGACGAATTTAC...AACTAGATGTAAATCAAAGTATATGTTTGtCTCATTTGAGCATTTTGGAATATTTGAGAATGTATGATACATGTAAAATTAAAAAAACTATTAGAACTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17975 PCAT1::PDHX ENSG00000253438.5::ENSG00000110435.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3115 TRUE 1181 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126557931:+ chr8:127568568-128431295:+ chr8:127570176:+ PDHX ENSG00000110435.13 protein_coding + + chr11:34915829-35020591:+ chr11:34992315:+ chr11:34937376-35042138:+ chr11:35013862:+ chr8:127329730,chr8:126577475,chr8:126577565,chr8:127278331,chr8:127329624,chr8:127329728,chr8:127329763,chr8:127329713 chr11:34985375,chr11:34929428,chr11:34929361,chr11:34969368,chr11:34985255,chr11:34985329,chr11:34985353,chr11:34985373 NA NA chr8:128341975,chr8:127589720,chr8:127589810,chr8:128290576,chr8:128341869,chr8:128341973,chr8:128342008,chr8:128341958 chr11:35006922,chr11:34950975,chr11:34950908,chr11:34990915,chr11:35006802,chr11:35006876,chr11:35006900,chr11:35006920 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |2-oxoacid_dehydrogenases_acyltransferase_(catalytic_domain)(37%) |2-oxoacid_dh(5%) 0 1 0 595 11351 ENST00000645463.1 ENST00000477173.3 downstream upstream none CAGAGCGCGACCTGGACAG|GCTCTATCAAAGAAAGCAAGAGATGGAAAATTGTTGCCTGAAGAATACCAAGGAGGATCTTTTAG___ATGGAGTCTGGCTCTGTCGCCCAGGCTGCAATGCAGaGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17976 CD44::ENSG00000286266 ENSG00000026508.21::ENSG00000286266.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3116 TRUE 1182 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35139370:+ chr11:35160429-35253949:+ chr11:35160917:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ chr11:35153248 chr8:127585785 NA NA chr11:35174795 chr8:128598030 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 1 29118 10 ENST00000263398.11 ENST00000650971.1 downstream upstream mismatches(1) CCTCTGCCAGGTTCGGTCCGCCATCCTCGTCCCGTCCTCCGCCGGCCCCTGCCCCGCGCCCAGGGATCCTCCAGCTCCTTTCGCCCGCGCCCTCCGTTCGCT...GTTTTGGTGGCACGCAGCCTGGGGACTCTGCCTCGTGCCGCTGAGCCTGGCGCAGATCG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTG FWWHAAWGLCLVPLSLAQI|gsllld* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17977 CD44::ENSG00000286266 ENSG00000026508.21::ENSG00000286266.1 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3116 TRUE 1182 CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35180407:+ chr11:35160429-35253949:+ chr11:35201954:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127629768:+ chr8:128590718-128649112:+ chr8:128642013:+ chr11:35220996,chr11:35220974,chr11:35220946,chr11:35220939,chr11:35220940,chr11:35220964,chr11:35220965,chr11:35220963,chr11:35220964,chr11:35220963,chr11:35220966,chr11:35188698,chr11:35188749,chr11:35218602,chr11:35188010,chr11:35188701,chr11:35188697,chr11:35188696,chr11:35188701,chr11:35188692 chr8:127613643,chr8:127613643,chr8:127613959,chr8:127613960,chr8:127613960,chr8:127613960,chr8:127613960,chr8:127613967,chr8:127614063,chr8:127614063,chr8:127614063,chr8:127617386,chr8:127617452,chr8:127620980,chr8:127617373,chr8:127617387,chr8:127617384,chr8:127617384,chr8:127617392,chr8:127617384 NA NA chr11:35242543,chr11:35242521,chr11:35242493,chr11:35242486,chr11:35242487,chr11:35242511,chr11:35242512,chr11:35242510,chr11:35242511,chr11:35242510,chr11:35242513,chr11:35210245,chr11:35210296,chr11:35240149,chr11:35209557,chr11:35210248,chr11:35210244,chr11:35210243,chr11:35210248,chr11:35210239 chr8:128625888,chr8:128625888,chr8:128626204,chr8:128626205,chr8:128626205,chr8:128626205,chr8:128626205,chr8:128626212,chr8:128626308,chr8:128626308,chr8:128626308,chr8:128629631,chr8:128629697,chr8:128633225,chr8:128629618,chr8:128629632,chr8:128629629,chr8:128629629,chr8:128629637,chr8:128629629 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Extracellular_link_domain(92%)| Xlink(8%)| 0 1 1 40175 5 ENST00000263398.11 ENST00000650971.1 downstream upstream none CACATATTGCTTCAATGCTTCAG|CTCATGTTGCATGTGGATGGCTGCAGCTCAGCAGCTGTAGAATCTGCACCACCTGTCTTATGCTGAGATCCAGCCTGGAGGAACACCCCTCTGTGGAATGTGGCACTCTCTTGGCAGAAAGAGCAAGAAAGCAGGCAGAAACTCATGAAGACTCTTAAAGGCTTCTGCTTGGGCACGGG___ATCTCATGAGCACCTATGATTCTCACCACTCCTGGTGCCATTCAGACCTTC TYCFNAS|ahvacgwlqlsscricttclmlrssleehpsvecgtllaerarkqaetheds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17988 SPECC1::LINC02096 ENSG00000128487.19::ENSG00000238212.3 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SPECC1 ENSG00000128487.19 protein_coding + + chr17:20008865-20319026:+ chr17:20156236:+ chr17:19912178-20222339:+ chr17:20059549:+ LINC02096 ENSG00000238212.3 lncRNA + - chr17:14834557-14957216:+ chr17:14939138:- chr17:14737874-14860533:+ chr17:14842455:- NA NA NA NA NA NA NA NA sense antisense unknown CDS intron inversion/3'-3' low none none none 0 0 3 9 9 ENST00000395530.6 unknown downstream downstream duplicates(1) GCGGACCCGCCGGACGCAACCGCCTCGCCAGCCGGAGCCAGCGCGAGCTCGGCACGGTGGACACCCGGTCCGAGGCCGGCAAGCCGGCTGGTGCCCGAGTCGGCCAAGCATGGGCAACCACTCAGGACGGCCCGAGGATCCGGAACCAG...|...TCCAAAACGCTGGGACTACAGGAATGAGCCACCGCACCCAACCCTCAACAAAGCATCTTTCTATGAAGTACCACATGGCTAAGATTATAAGAAAATTCCACTGGTCCCATCAGCCTTCACCCCAAGACAAAGTAGTCCTGTTCTTCGACCAGCTGCAAAGACTTCTTTATTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE sperm antigen with calponin homology and coiled-coil domains 1 2 JMML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 17996 PVT1::ATE1 ENSG00000249859.14::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3117 TRUE 1183 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121790289:- chr10:123468907-123688316:- chr10:123549804:- chr8:127882609,chr8:127882631,chr8:127889273,chr8:127889348,chr8:127889429,chr8:127889249,chr8:127908505,chr8:127908524,chr8:127908534,chr8:127908559,chr8:127974669,chr8:127974701,chr8:128016207,chr8:128016259,chr8:128016274,chr8:128016642,chr8:127808793,chr8:127808793,chr8:127809028,chr8:127908479,chr8:127882711,chr8:127908572,chr8:127908548,chr8:127908615,chr8:127908621,chr8:127991221,chr8:127889205,chr8:127808870,chr8:127808857,chr8:127808877,chr8:127864698,chr8:127864793,chr8:127864785,chr8:127808864,chr8:127864602,chr8:127864600,chr8:127809049,chr8:127808941,chr8:127984076,chr8:127984082,chr8:127841944,chr8:127907204,chr8:127841960,chr8:127907184,chr8:127808826,chr8:127844824,chr8:127808828,chr8:127808985,chr8:127808979,chr8:127844796,chr8:127808887,chr8:127808887,chr8:127808888,chr8:127808924,chr8:127808925,chr8:127808888,chr8:127808888,chr8:127808928,chr8:127844839,chr8:127808849,chr8:127977636,chr8:127962249,chr8:127962092,chr8:127961993,chr8:127889351,chr8:127889325,chr8:127889338,chr8:127889351,chr8:127889323,chr8:127889468,chr8:127889468,chr8:127864714,chr8:127864598 chr10:121791298,chr10:121791315,chr10:121896669,chr10:121896636,chr10:121896664,chr10:121896668,chr10:121791297,chr10:121791328,chr10:121791328,chr10:121791373,chr10:121850858,chr10:121850826,chr10:121884050,chr10:121884115,chr10:121884116,chr10:121883956,chr10:121852504,chr10:121852541,chr10:121817550,chr10:121791196,chr10:121791268,chr10:121791268,chr10:121791312,chr10:121791312,chr10:121791327,chr10:121794537,chr10:121798839,chr10:121817343,chr10:121817323,chr10:121817353,chr10:121817423,chr10:121817448,chr10:121817447,chr10:121817446,chr10:121817504,chr10:121817506,chr10:121817538,chr10:121817602,chr10:121829530,chr10:121829523,chr10:121844201,chr10:121844180,chr10:121844180,chr10:121844201,chr10:121852462,chr10:121852485,chr10:121852470,chr10:121852497,chr10:121852497,chr10:121852497,chr10:121852504,chr10:121852526,chr10:121852548,chr10:121852550,chr10:121852540,chr10:121852550,chr10:121852535,chr10:121852541,chr10:121852605,chr10:121852568,chr10:121855828,chr10:121893963,chr10:121894083,chr10:121894139,chr10:121896598,chr10:121896633,chr10:121896607,chr10:121896640,chr10:121896635,chr10:121896828,chr10:121896829,chr10:121817451,chr10:121817508 NA NA chr8:128894855,chr8:128894877,chr8:128901519,chr8:128901594,chr8:128901675,chr8:128901495,chr8:128920751,chr8:128920770,chr8:128920780,chr8:128920805,chr8:128986915,chr8:128986947,chr8:129028453,chr8:129028505,chr8:129028520,chr8:129028888,chr8:128821039,chr8:128821039,chr8:128821274,chr8:128920725,chr8:128894957,chr8:128920818,chr8:128920794,chr8:128920861,chr8:128920867,chr8:129003467,chr8:128901451,chr8:128821116,chr8:128821103,chr8:128821123,chr8:128876944,chr8:128877039,chr8:128877031,chr8:128821110,chr8:128876848,chr8:128876846,chr8:128821295,chr8:128821187,chr8:128996322,chr8:128996328,chr8:128854190,chr8:128919450,chr8:128854206,chr8:128919430,chr8:128821072,chr8:128857070,chr8:128821074,chr8:128821231,chr8:128821225,chr8:128857042,chr8:128821133,chr8:128821133,chr8:128821134,chr8:128821170,chr8:128821171,chr8:128821134,chr8:128821134,chr8:128821174,chr8:128857085,chr8:128821095,chr8:128989882,chr8:128974495,chr8:128974338,chr8:128974239,chr8:128901597,chr8:128901571,chr8:128901584,chr8:128901597,chr8:128901569,chr8:128901714,chr8:128901714,chr8:128876960,chr8:128876844 chr10:123550813,chr10:123550830,chr10:123656184,chr10:123656151,chr10:123656179,chr10:123656183,chr10:123550812,chr10:123550843,chr10:123550843,chr10:123550888,chr10:123610373,chr10:123610341,chr10:123643565,chr10:123643630,chr10:123643631,chr10:123643471,chr10:123612019,chr10:123612056,chr10:123577065,chr10:123550711,chr10:123550783,chr10:123550783,chr10:123550827,chr10:123550827,chr10:123550842,chr10:123554052,chr10:123558354,chr10:123576858,chr10:123576838,chr10:123576868,chr10:123576938,chr10:123576963,chr10:123576962,chr10:123576961,chr10:123577019,chr10:123577021,chr10:123577053,chr10:123577117,chr10:123589045,chr10:123589038,chr10:123603716,chr10:123603695,chr10:123603695,chr10:123603716,chr10:123611977,chr10:123612000,chr10:123611985,chr10:123612012,chr10:123612012,chr10:123612012,chr10:123612019,chr10:123612041,chr10:123612063,chr10:123612065,chr10:123612055,chr10:123612065,chr10:123612050,chr10:123612056,chr10:123612120,chr10:123612083,chr10:123615343,chr10:123653478,chr10:123653598,chr10:123653654,chr10:123656113,chr10:123656148,chr10:123656122,chr10:123656155,chr10:123656150,chr10:123656343,chr10:123656344,chr10:123576966,chr10:123577023 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Arginine-tRNA-protein_transferase__C_terminus(5%) |ATE_C(0%) 0 2 0 4484 125 ENST00000651587.1 ENST00000540606.7 downstream downstream duplicates(1) AAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCAGTATAGACCTTCTGATTTGCTGTGCCCTGAGACATATGTTTGGGTACCCATTGAGCAATGCCTGCCTTCACTTGAAAACTCCAAGTACTGCCGTTTCAACCAGGACCCAGAAGCAG___TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACGGTGTTTATAAGAAACAGCAGAAAGACCCAAGTGAGGAGGCTGCTGTTCTGCAGTACGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17997 PVT1::ATE1 ENSG00000249859.14::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3117 TRUE 1183 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr8:127858139,chr8:127858295,chr8:127858324,chr8:127864714,chr8:127864598,chr8:127882609,chr8:127882631,chr8:127889273,chr8:127889348,chr8:127889429,chr8:127889249,chr8:127908505,chr8:127908524,chr8:127908534,chr8:127908559,chr8:127924937,chr8:127808793,chr8:127808793,chr8:127809028,chr8:127974669,chr8:127974701,chr8:128016207,chr8:128016259,chr8:128016274,chr8:128016642,chr8:127858279,chr8:127858288,chr8:127858314,chr8:127858263,chr8:127858285,chr8:127858285,chr8:127962038,chr8:127820842,chr8:127955730,chr8:127955762,chr8:127962788,chr8:127924792,chr8:127908479,chr8:127882711,chr8:127908572,chr8:127908548,chr8:127908615,chr8:127908621,chr8:127991221,chr8:127889205,chr8:127808870,chr8:127808857,chr8:127808877,chr8:127864698,chr8:127864793,chr8:127864785,chr8:127808864,chr8:127864602,chr8:127864600,chr8:127809049,chr8:127808941,chr8:127984076,chr8:127984082,chr8:127841944,chr8:127907204,chr8:127841960,chr8:127907184,chr8:127808826,chr8:127844824,chr8:127808828,chr8:127808985,chr8:127808979,chr8:127844796,chr8:127808887,chr8:127808887,chr8:127808888,chr8:127808924,chr8:127808925,chr8:127808888,chr8:127808888,chr8:127808928,chr8:127844839,chr8:127808849,chr8:127977636,chr8:127962249,chr8:127962092,chr8:127961993,chr8:127889351,chr8:127889325,chr8:127889338,chr8:127889351,chr8:127889323,chr8:127889468,chr8:127889468 chr10:121752357,chr10:121752495,chr10:121752466,chr10:121817451,chr10:121817508,chr10:121791298,chr10:121791315,chr10:121896669,chr10:121896636,chr10:121896664,chr10:121896668,chr10:121791297,chr10:121791328,chr10:121791328,chr10:121791373,chr10:121778906,chr10:121852504,chr10:121852541,chr10:121817550,chr10:121850858,chr10:121850826,chr10:121884050,chr10:121884115,chr10:121884116,chr10:121883956,chr10:121752378,chr10:121752364,chr10:121752343,chr10:121752394,chr10:121752341,chr10:121752372,chr10:121767003,chr10:121769618,chr10:121772520,chr10:121772653,chr10:121774289,chr10:121778845,chr10:121791196,chr10:121791268,chr10:121791268,chr10:121791312,chr10:121791312,chr10:121791327,chr10:121794537,chr10:121798839,chr10:121817343,chr10:121817323,chr10:121817353,chr10:121817423,chr10:121817448,chr10:121817447,chr10:121817446,chr10:121817504,chr10:121817506,chr10:121817538,chr10:121817602,chr10:121829530,chr10:121829523,chr10:121844201,chr10:121844180,chr10:121844180,chr10:121844201,chr10:121852462,chr10:121852485,chr10:121852470,chr10:121852497,chr10:121852497,chr10:121852497,chr10:121852504,chr10:121852526,chr10:121852548,chr10:121852550,chr10:121852540,chr10:121852550,chr10:121852535,chr10:121852541,chr10:121852605,chr10:121852568,chr10:121855828,chr10:121893963,chr10:121894083,chr10:121894139,chr10:121896598,chr10:121896633,chr10:121896607,chr10:121896640,chr10:121896635,chr10:121896828,chr10:121896829 NA NA chr8:128870385,chr8:128870541,chr8:128870570,chr8:128876960,chr8:128876844,chr8:128894855,chr8:128894877,chr8:128901519,chr8:128901594,chr8:128901675,chr8:128901495,chr8:128920751,chr8:128920770,chr8:128920780,chr8:128920805,chr8:128937183,chr8:128821039,chr8:128821039,chr8:128821274,chr8:128986915,chr8:128986947,chr8:129028453,chr8:129028505,chr8:129028520,chr8:129028888,chr8:128870525,chr8:128870534,chr8:128870560,chr8:128870509,chr8:128870531,chr8:128870531,chr8:128974284,chr8:128833088,chr8:128967976,chr8:128968008,chr8:128975034,chr8:128937038,chr8:128920725,chr8:128894957,chr8:128920818,chr8:128920794,chr8:128920861,chr8:128920867,chr8:129003467,chr8:128901451,chr8:128821116,chr8:128821103,chr8:128821123,chr8:128876944,chr8:128877039,chr8:128877031,chr8:128821110,chr8:128876848,chr8:128876846,chr8:128821295,chr8:128821187,chr8:128996322,chr8:128996328,chr8:128854190,chr8:128919450,chr8:128854206,chr8:128919430,chr8:128821072,chr8:128857070,chr8:128821074,chr8:128821231,chr8:128821225,chr8:128857042,chr8:128821133,chr8:128821133,chr8:128821134,chr8:128821170,chr8:128821171,chr8:128821134,chr8:128821134,chr8:128821174,chr8:128857085,chr8:128821095,chr8:128989882,chr8:128974495,chr8:128974338,chr8:128974239,chr8:128901597,chr8:128901571,chr8:128901584,chr8:128901597,chr8:128901569,chr8:128901714,chr8:128901714 chr10:123511872,chr10:123512010,chr10:123511981,chr10:123576966,chr10:123577023,chr10:123550813,chr10:123550830,chr10:123656184,chr10:123656151,chr10:123656179,chr10:123656183,chr10:123550812,chr10:123550843,chr10:123550843,chr10:123550888,chr10:123538421,chr10:123612019,chr10:123612056,chr10:123577065,chr10:123610373,chr10:123610341,chr10:123643565,chr10:123643630,chr10:123643631,chr10:123643471,chr10:123511893,chr10:123511879,chr10:123511858,chr10:123511909,chr10:123511856,chr10:123511887,chr10:123526518,chr10:123529133,chr10:123532035,chr10:123532168,chr10:123533804,chr10:123538360,chr10:123550711,chr10:123550783,chr10:123550783,chr10:123550827,chr10:123550827,chr10:123550842,chr10:123554052,chr10:123558354,chr10:123576858,chr10:123576838,chr10:123576868,chr10:123576938,chr10:123576963,chr10:123576962,chr10:123576961,chr10:123577019,chr10:123577021,chr10:123577053,chr10:123577117,chr10:123589045,chr10:123589038,chr10:123603716,chr10:123603695,chr10:123603695,chr10:123603716,chr10:123611977,chr10:123612000,chr10:123611985,chr10:123612012,chr10:123612012,chr10:123612012,chr10:123612019,chr10:123612041,chr10:123612063,chr10:123612065,chr10:123612055,chr10:123612065,chr10:123612050,chr10:123612056,chr10:123612120,chr10:123612083,chr10:123615343,chr10:123653478,chr10:123653598,chr10:123653654,chr10:123656113,chr10:123656148,chr10:123656122,chr10:123656155,chr10:123656150,chr10:123656343,chr10:123656344 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none none none 1 0 0 4484 164 ENST00000651587.1 ENST00000540606.7 downstream downstream none CCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAGAGCCATCATGCCTTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17998 PVT1::ATE1 ENSG00000249859.14::ENSG00000107669.19 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3117 TRUE 1183 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ ATE1 ENSG00000107669.19 protein_coding - - chr10:121709393-121928801:- chr10:121743858:- chr10:123468907-123688316:- chr10:123503373:- chr8:128016207,chr8:128016259,chr8:128016274,chr8:128016642,chr8:127962038,chr8:127955730,chr8:127955762,chr8:127962788,chr8:127991221,chr8:127984076,chr8:127984082,chr8:127977636,chr8:127962249,chr8:127962092,chr8:127961993,chr8:127974669,chr8:127974701 chr10:121884050,chr10:121884115,chr10:121884116,chr10:121883956,chr10:121767003,chr10:121772520,chr10:121772653,chr10:121774289,chr10:121794537,chr10:121829530,chr10:121829523,chr10:121855828,chr10:121893963,chr10:121894083,chr10:121894139,chr10:121850858,chr10:121850826 NA NA chr8:129028453,chr8:129028505,chr8:129028520,chr8:129028888,chr8:128974284,chr8:128967976,chr8:128968008,chr8:128975034,chr8:129003467,chr8:128996322,chr8:128996328,chr8:128989882,chr8:128974495,chr8:128974338,chr8:128974239,chr8:128986915,chr8:128986947 chr10:123643565,chr10:123643630,chr10:123643631,chr10:123643471,chr10:123526518,chr10:123532035,chr10:123532168,chr10:123533804,chr10:123554052,chr10:123589045,chr10:123589038,chr10:123615343,chr10:123653478,chr10:123653598,chr10:123653654,chr10:123610373,chr10:123610341 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none none none 1 0 0 792 164 ENST00000667305.1 ENST00000540606.7 downstream downstream none TTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCC...GCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|TGGATGAGGATCGCAGTACGGAACCTGACCGATTGCAGGTGTTTCACAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 17999 FGFR2::CASC8 ENSG00000066468.24::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3118 TRUE 1184 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr10:121543253,chr10:121543268,chr10:121543281,chr10:121551133,chr10:121551016,chr10:121582572,chr10:121582635,chr10:121582655,chr10:121582666,chr10:121587934,chr10:121539280,chr10:121539277,chr10:121587619,chr10:121587668,chr10:121506229,chr10:121506229,chr10:121502521,chr10:121489261,chr10:121489275,chr10:121489162,chr10:121582605,chr10:121543237,chr10:121551501,chr10:121509634,chr10:121491695,chr10:121491837,chr10:121491884,chr10:121491887,chr10:121491889,chr10:121491891,chr10:121491996,chr10:121491996,chr10:121506249,chr10:121506249,chr10:121506254,chr10:121506256,chr10:121506263,chr10:121506264,chr10:121506280,chr10:121509702,chr10:121509421 chr8:127456799,chr8:127456799,chr8:127456799,chr8:127456654,chr8:127456750,chr8:127456704,chr8:127456695,chr8:127456708,chr8:127456626,chr8:127440618,chr8:127422522,chr8:127422560,chr8:127440667,chr8:127440386,chr8:127443109,chr8:127443118,chr8:127447834,chr8:127451293,chr8:127451262,chr8:127451134,chr8:127456680,chr8:127456742,chr8:127457314,chr8:127478615,chr8:127477913,chr8:127477896,chr8:127477948,chr8:127429266,chr8:127477948,chr8:127477948,chr8:127429190,chr8:127477912,chr8:127443199,chr8:127443201,chr8:127443158,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127478019,chr8:127477949 NA NA chr10:123302767,chr10:123302782,chr10:123302795,chr10:123310647,chr10:123310530,chr10:123342086,chr10:123342149,chr10:123342169,chr10:123342180,chr10:123347448,chr10:123298794,chr10:123298791,chr10:123347133,chr10:123347182,chr10:123265743,chr10:123265743,chr10:123262035,chr10:123248775,chr10:123248789,chr10:123248676,chr10:123342119,chr10:123302751,chr10:123311015,chr10:123269148,chr10:123251209,chr10:123251351,chr10:123251398,chr10:123251401,chr10:123251403,chr10:123251405,chr10:123251510,chr10:123251510,chr10:123265763,chr10:123265763,chr10:123265768,chr10:123265770,chr10:123265777,chr10:123265778,chr10:123265794,chr10:123269216,chr10:123268935 chr8:128469044,chr8:128469044,chr8:128469044,chr8:128468899,chr8:128468995,chr8:128468949,chr8:128468940,chr8:128468953,chr8:128468871,chr8:128452863,chr8:128434767,chr8:128434805,chr8:128452912,chr8:128452631,chr8:128455354,chr8:128455363,chr8:128460079,chr8:128463538,chr8:128463507,chr8:128463379,chr8:128468925,chr8:128468987,chr8:128469559,chr8:128490860,chr8:128490158,chr8:128490141,chr8:128490193,chr8:128441511,chr8:128490193,chr8:128490193,chr8:128441435,chr8:128490157,chr8:128455444,chr8:128455446,chr8:128455403,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128490264,chr8:128490194 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 2 0 24238 21 ENST00000613048.4 ENST00000502082.5 upstream downstream none CTGGTCGTGGTCACCATGGCAACCTTGTCCCTGGCCCGGCCCTCCTTCAGTTTAGTTGAGGATACCACATTAGAGCCAGAAG|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCA LVVVTMATLSLARPSFSLVEDTTLEPE|alc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 18000 FGFR2::CASC8 ENSG00000066468.24::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3118 TRUE 1184 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121538592:- chr10:123237846-123357972:- chr10:123298106:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr10:121506229,chr10:121506229,chr10:121502521,chr10:121489261,chr10:121509634,chr10:121491695,chr10:121489275,chr10:121489162,chr10:121491837,chr10:121491884,chr10:121491887,chr10:121491889,chr10:121491891,chr10:121491996,chr10:121491996,chr10:121506249,chr10:121506249,chr10:121506254,chr10:121506256,chr10:121506263,chr10:121506264,chr10:121506280,chr10:121509702,chr10:121509421 chr8:127443109,chr8:127443118,chr8:127447834,chr8:127451293,chr8:127478615,chr8:127477913,chr8:127451262,chr8:127451134,chr8:127477896,chr8:127477948,chr8:127429266,chr8:127477948,chr8:127477948,chr8:127429190,chr8:127477912,chr8:127443199,chr8:127443201,chr8:127443158,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127478019,chr8:127477949 NA NA chr10:123265743,chr10:123265743,chr10:123262035,chr10:123248775,chr10:123269148,chr10:123251209,chr10:123248789,chr10:123248676,chr10:123251351,chr10:123251398,chr10:123251401,chr10:123251403,chr10:123251405,chr10:123251510,chr10:123251510,chr10:123265763,chr10:123265763,chr10:123265768,chr10:123265770,chr10:123265777,chr10:123265778,chr10:123265794,chr10:123269216,chr10:123268935 chr8:128455354,chr8:128455363,chr8:128460079,chr8:128463538,chr8:128490860,chr8:128490158,chr8:128463507,chr8:128463379,chr8:128490141,chr8:128490193,chr8:128441511,chr8:128490193,chr8:128490193,chr8:128441435,chr8:128490157,chr8:128455444,chr8:128455446,chr8:128455403,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128490264,chr8:128490194 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Immunoglobulin_I-set_domain(35%),Immunoglobulin_domain(100%)| I-set(70%),Ig_2(100%),Ig_3(85%),ig(90%)| 1 0 0 15742 21 ENST00000613048.4 ENST00000502082.5 upstream downstream none GAGAACAGTAACAACAAGA___GAGCACCATACTGGACCAACACAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTG...TCAATCACACGTACCACCTGGATGTTGTGG|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGC NHTYHLDVV|alc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 18001 FGFR2::CASC8 ENSG00000066468.24::ENSG00000246228.7 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3118 TRUE 1184 FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121551290:- chr10:123237846-123357972:- chr10:123310804:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr10:121543253,chr10:121543268,chr10:121543281,chr10:121539280,chr10:121539277,chr10:121506229,chr10:121506229,chr10:121502521,chr10:121489261,chr10:121543237,chr10:121509634,chr10:121491695,chr10:121489275,chr10:121489162,chr10:121491837,chr10:121491884,chr10:121491887,chr10:121491889,chr10:121491891,chr10:121491996,chr10:121491996,chr10:121506249,chr10:121506249,chr10:121506254,chr10:121506256,chr10:121506263,chr10:121506264,chr10:121506280,chr10:121509702,chr10:121509421 chr8:127456799,chr8:127456799,chr8:127456799,chr8:127422522,chr8:127422560,chr8:127443109,chr8:127443118,chr8:127447834,chr8:127451293,chr8:127456742,chr8:127478615,chr8:127477913,chr8:127451262,chr8:127451134,chr8:127477896,chr8:127477948,chr8:127429266,chr8:127477948,chr8:127477948,chr8:127429190,chr8:127477912,chr8:127443199,chr8:127443201,chr8:127443158,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127443160,chr8:127478019,chr8:127477949 NA NA chr10:123302767,chr10:123302782,chr10:123302795,chr10:123298794,chr10:123298791,chr10:123265743,chr10:123265743,chr10:123262035,chr10:123248775,chr10:123302751,chr10:123269148,chr10:123251209,chr10:123248789,chr10:123248676,chr10:123251351,chr10:123251398,chr10:123251401,chr10:123251403,chr10:123251405,chr10:123251510,chr10:123251510,chr10:123265763,chr10:123265763,chr10:123265768,chr10:123265770,chr10:123265777,chr10:123265778,chr10:123265794,chr10:123269216,chr10:123268935 chr8:128469044,chr8:128469044,chr8:128469044,chr8:128434767,chr8:128434805,chr8:128455354,chr8:128455363,chr8:128460079,chr8:128463538,chr8:128468987,chr8:128490860,chr8:128490158,chr8:128463507,chr8:128463379,chr8:128490141,chr8:128490193,chr8:128441511,chr8:128490193,chr8:128490193,chr8:128441435,chr8:128490157,chr8:128455444,chr8:128455446,chr8:128455403,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128455405,chr8:128490264,chr8:128490194 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)| I-set(1%),Ig_2(0%),Ig_3(1%),ig(0%)| 1 0 0 12899 21 ENST00000613048.4 ENST00000502082.5 upstream downstream none GCACCATACTGGACCAACAaAGAAAAGATGGAAAAGCGGCTCCATGCTGTGCCTGCGGCCAACACTGTCAAGTTTCGCTGCCCAGCCGGGGGGAACCCAAT...AGTTTAAGCAGGAGCATCGCATTGGAGGCTACAAG|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAG FKQEHRIGGYK|lcadehghlercveygrarkc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 18002 FNDC3B::STX7 ENSG00000075420.13::ENSG00000079950.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FNDC3B ENSG00000075420.13 protein_coding + + chr3:172039578-172401669:+ chr3:172310881:+ chr3:171757368-172119459:+ chr3:172028671:+ STX7 ENSG00000079950.14 protein_coding - + chr6:132445867-132513198:- chr6:132489513:+ chr6:132767006-132834337:- chr6:132810652:+ chr3:172315462,chr3:172315463 chr6:132488376,chr6:132488374 NA NA chr3:172033252,chr3:172033253 chr6:132809515,chr6:132809513 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Fibronectin_type_III_domain(17%)| fn3(27%)| 156 271 210 1846 807 ENST00000415807.7 unknown downstream upstream duplicates(78),low_entropy(2),mismatches(28),multimappers(2) GCTCCGAGCCTGTTAGCTTCACCACCCACAGCTGTGCACCCGAGTGTCCTTTCCCCCCTAAGCTGGCACATAGGAGCAAAAGTTCACTAACCCTGCAGTGGAAG___GCACCAATTGACAACGGTTCAAAAATCACCAACTACCTTTTAGAGTGGGATGAG|CACTAGTATATCTCATGCTCTGTCTTATGACCTGAAGAGAACACTTGTCTTCTTTGTGAGCAAAAGCACTGATCCAAACTGCAGAGACGAGAAAGTGTGGGAAGGGAGATGGAGAAGGATCTTCTAAAGGATGAGTCTCGAGGCTGGAAGCTCAATGGAGAGCATCCACCCGCAAGGCCCAACTACACTGGCTTCCTG SEPVSFTTHSCAPECPFPPKLAHRSKSSLTLQWKAPIDNGSKITNYLLEWDE|h* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18003 MLLT6::GPSM2 ENSG00000275023.5::ENSG00000121957.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1701 TRUE 3119 TRUE 1185 MLLT6 ENSG00000275023.5 protein_coding + + chr17:38705273-38729795:+ chr17:38705741:+ chr17:36861526-36886048:+ chr17:36861994:+ GPSM2 ENSG00000121957.15 protein_coding + + chr1:108875350-108934545:+ chr1:108918613:+ chr1:109417972-109477167:+ chr1:109461235:+ chr17:38706011,chr17:38706011 chr1:108917724,chr1:108917721 NA NA chr17:36862264,chr17:36862264 chr1:109460346,chr1:109460343 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none PHD-finger(48%)|GoLoco_motif(100%) PHD(6%),PHD_2(4%)|GoLoco(100%) 96 300 53 892 3320 ENST00000621332.5 ENST00000674731.1 downstream upstream duplicates(85),inconsistently_clipped(9),low_entropy(5),mismatches(66) CCCGGAGGGAGCTCATGGGAGTATGAAGGAGATGGTAGGAGGCTGCTGCGTATGTTCGGACGAGAGGGGCTGGGCCGAGAACCCGCTGGTCTACTGCGATGGGCACGCGTGCAGCGTGGCCGTCCACCAAG|GTACAGAACTGGAACAGTGAAATTCTTGCTAAGCAAAAACCTCTTATTGCCAAACCTTCTGCAAAGCTACTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCCAAGATGCCAGTAATTCTATTGACCACCGAATTCCAAATTCTC MKEMVGGCCVCSDERGWAENPLVYCDGHACSVAVHQ|gTELEQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (AF17) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 18004 MLLT6::GPSM2 ENSG00000275023.5::ENSG00000121957.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3119 TRUE 1185 MLLT6 ENSG00000275023.5 protein_coding + + chr17:38705273-38729795:+ chr17:38705741:+ chr17:36861526-36886048:+ chr17:36861994:+ GPSM2 ENSG00000121957.15 protein_coding + + chr1:108875350-108934545:+ chr1:108922417:+ chr1:109417972-109477167:+ chr1:109465039:+ chr17:38706011,chr17:38706011 chr1:108917724,chr1:108917721 NA NA chr17:36862264,chr17:36862264 chr1:109460346,chr1:109460343 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none PHD-finger(48%)|GoLoco_motif(100%) PHD(6%),PHD_2(4%)|GoLoco(100%) 0 2 9 892 2517 ENST00000621332.5 ENST00000406462.6 downstream upstream duplicates(1) CCCGCCCCAGCCCCGGAGGGAGCTCATGGGAGTATGAAGGAGATGGTAGGAGGCTGCTGCGTATGTTCGGACGAGAGGGGCTGGGCCGAGAACCCGCTGGTCTACTGCGATGGGCACGCGTGCAGCGTGGCCGTCCACCAAG|AAAATCAGTGCAGATACTATTGGAGATGAAGGGTTCTTTGACTTATTAAGCCGATTTCAAAGCAATAGGATGGATGATCAGAGATGTTGCTTACAAGAAAAGAACTGCCATACAGCTTCAACAACAACTTCTTCCACTCCCCCTAAAATGATGCTAAAAA___CATCATCTGTTCCTGTGGTATCCCC MKEMVGGCCVCSDERGWAENPLVYCDGHACSVAVHQ|enqcryywr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (AF17) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 18005 STARD7::TTC27 ENSG00000084090.14::ENSG00000018699.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1702 TRUE 3120 TRUE 1186 STARD7 ENSG00000084090.14 protein_coding - - chr2:96184859-96208827:- chr2:96194958:- chr2:96850597-96874565:- chr2:96860696:- TTC27 ENSG00000018699.13 protein_coding + + chr2:32628032-32821051:+ chr2:32733828:+ chr2:32853099-33046118:+ chr2:32958895:+ chr2:96193252,chr2:96193254 chr2:32710489,chr2:32710487 NA NA chr2:96858990,chr2:96858992 chr2:32935556,chr2:32935554 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none START_domain(26%)|Tetratricopeptide_repeat(100%) START(5%)|TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%) 131 126 162 2602 534 ENST00000337288.10 ENST00000317907.9 upstream upstream duplicates(47),low_entropy(6),mismatches(14) AAGAAATGTCAAATATGTTTCAGAGCTCTGGAGTCCAGCACCACCCTCCAGAACCAAAAGCCCAAACAGAAGGGAATGAAGATTCAGAGGGCAAAGAGCAACGTTGGGAAATGGTGATGGATAAGAAACACTTTAAGCTGTGGCGGCGCCCAATTACAGGCACCCACCTTTACCAGTACCGAG___TTTTTGGAACCTACACAGATGTGACACCTCGGCAGTTCTTCAATGTTCAG|GCTCTTGCAGACCAATTTGAAGATAAAACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGTCAAGTACCACCTCACTGGGCCATTCAG___CGCCAACTTGCAAGTTTGCTCTTTGAGTTGGGATGTACCAGTTCAGCCCTTCAGATATTTGAAAAGCTAGAAATGTGGGAAGATGTTGTCATTTGTTATGAAAGAGCCG EMSNMFQSSGVQHHPPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQ|ALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASLLFELGCTSSALQIFEKLEMWEDVVICYERA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18006 STARD7::TTC27 ENSG00000084090.14::ENSG00000018699.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3120 TRUE 1186 STARD7 ENSG00000084090.14 protein_coding - - chr2:96184859-96208827:- chr2:96208145:- chr2:96850597-96874565:- chr2:96873883:- TTC27 ENSG00000018699.13 protein_coding + + chr2:32628032-32821051:+ chr2:32733828:+ chr2:32853099-33046118:+ chr2:32958895:+ chr2:96193252,chr2:96193254 chr2:32710489,chr2:32710487 NA NA chr2:96858990,chr2:96858992 chr2:32935556,chr2:32935554 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Tetratricopeptide_repeat(100%) |TPR_16(100%),TPR_2(100%),TPR_6(100%),TPR_7(100%),TPR_8(100%) 0 1 4 1266 534 ENST00000337288.10 ENST00000317907.9 upstream upstream none ACGGGCCTGCGCGTGCGGCGCGCGCAGCAGATCGCGCAGCTCTACGGCCGCCTCTACTCCGAGAGCTCACGCCGCGTTCTCCTCGGCCGCCTCTGGCGCCGGCTGCACGGCCGTCCTGGCCATGCCTCTGCCTTGATGGCGGCGTTAGCCGGCGTCTTCGTTTGGGACGAGGAGAGGATCCAGGAGGAGGAGTTGCAGAG|GCTCTTGCAGACCAATTTGAAGATAAAACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGTCAAGTACCACCTCACTGGGCCATTCAG___GCAGAAGAAATCCTTAGACAAGAGCTGGAGAAAAAAGAAACGgCTAGTTTATACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTATGACAAGGCCTGGGAGTTGTCCCGGTACCGCAGTGCTCGTGCTCAG TGLRVRRAQQIAQLYGRLYSESSRRVLLGRLWRRLHGRPGHASALMAALAGVFVWDEERIQEEELQr|llqtnlkiklhlywna* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18007 CTDSPL2::GOLM2 ENSG00000137770.14::ENSG00000166734.20 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1703 TRUE 3121 TRUE 1187 CTDSPL2 ENSG00000137770.14 protein_coding + + chr15:44427622-44529038:+ chr15:44459200:+ chr15:44719820-44821236:+ chr15:44751398:+ GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44413336:+ chr15:44580917-44707956:+ chr15:44705534:+ chr15:44466405,chr15:44466400 chr15:44392465,chr15:44392461 NA NA chr15:44758603,chr15:44758598 chr15:44684663,chr15:44684659 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 107 87 95 576 1097 ENST00000260327.9 ENST00000299957.11 downstream upstream duplicates(26),inconsistently_clipped(4),low_entropy(1),mismappers(1),mismatches(15) CCACACATTGCGCAGTCGGGACCATCGCCGGAGCCTGAGGACACTTCTCTGTCGTCACAGTTAG___TTTTACATGTGGCACCCATAAAAGATGAGGCTGAGAACACGGAAAGCTTCTCAGCAGTCAAATCAAATCCAAACACAACGCACTGCCAGAGCAAAGAGGAAATATTCAGAGGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGAAGAATGAAACCGGCTTGTTGTCTTCAATTAAAAAATTTATTAAAGGAAGCACACCTAAG|ATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGACTATGGAAAGCAACATTTCAATGATGTCCTTTAAGTCCTAAAGGAATGCTTCAGAAAACCTAAAGTGCTGTAAAATGAAATCATTCTACTTTGTCCTTTCTGACTTTTGTTGTAAAGACGAATTGTATCAGTTGTAAAGATACATTGAGATAGAATTAAGGAAAAACTTTAATGAAG MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPK|mmknesfkwilqtmesnismmsfks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Prostate exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18008 CTDSPL2::GOLM2 ENSG00000137770.14::ENSG00000166734.20 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3121 TRUE 1187 CTDSPL2 ENSG00000137770.14 protein_coding + + chr15:44427622-44529038:+ chr15:44459200:+ chr15:44719820-44821236:+ chr15:44751398:+ GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44402887:+ chr15:44580917-44707956:+ chr15:44695085:+ chr15:44466405,chr15:44466400 chr15:44392465,chr15:44392461 NA NA chr15:44758603,chr15:44758598 chr15:44684663,chr15:44684659 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none none 2 3 107 576 380 ENST00000260327.9 ENST00000299957.11 downstream upstream duplicates(9),mismatches(10) GAAAGACACCACACATTGCGCAGTCGGGACCATCGCCGGAGCCTGAGGACACTTCTCTGTCGTCACAGTTAG___TTTTACATGTGGCACCCATAAAAGATGAGGCTGAGAACACGGAAAGCTTCTCAGCAGTCAAATCAAATCCAAACACAACGCACTGCCAGAGCAAAGAGGAAATATTCAGAGGTTGATGATAGCCTGCCTTCAGGAGGAGAAAAACCATCGAAGAATGAAACCGGCTTGTTGTCTTCAATTAAAAAATTTATTAAAGGAAGCACACCTAAG|GCCGATTCTTTGATGAAAATGAATCCCCTGTTGATCCGCAGCATGGCTCTAAACTGGCGGATTATAATGGGGATGATGGTAACGTAGGTGAGTATGAGGCAGACAAGCAGGCTGAGCTGGCTTACAATGAGGAAGAAGATGGTGATGGTGGAGAGGAAGACGTCCAAG___ATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGACTATGGAAAGCAACATTTCAATGATGTCCTTTAAGTCCTAAAGGAATGCTTCAGAAAACC MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPK|adslmkmnpllirsmalnwriimgmmvt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Prostate exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18009 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1704 TRUE 3122 TRUE 1188 NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1778289:- chr1:1682671-1711896:- chr1:1709728:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1545002:- chr1:1477053-1510243:- chr1:1480382:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Ssu72-like_protein(62%) |Ssu72(9%) 31 204 9 442 2081 ENST00000341426.9 ENST00000291386.4 upstream downstream duplicates(34),inconsistently_clipped(1),mismatches(55) GCGGCGCGGCGGCGGGGCCTGCGGGCTCGGTCCGGCATGTAGACGCCCCCGCAGGCGCCCGCGGCAGCGAACG|CTATACACAGAATGGGATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCTGATCCTCACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGAAG___ATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCcGTGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18010 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3122 TRUE 1188 NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1778746:- chr1:1682671-1711896:- chr1:1710185:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1545002:- chr1:1477053-1510243:- chr1:1480382:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Ssu72-like_protein(62%) |Ssu72(9%) 1 13 1 52 2081 ENST00000341991.7 ENST00000291386.4 upstream downstream duplicates(2),mismatches(24) CGGGACGCCGGGCTGGGATCACAATGTCGGGGGCGCCTAGGCGTAGACGTGGCGGG?GG?CCCGGGGGCGCCCTCCGGACGCGGCAG|CTATACACAGAATGGGATTTTACATATGCTGGACAGAAATAAGAGAATCAAGCCCCGGCCAGAAAGATTCCAGAACTGCAAAGACCTGTTTGATCTGATCCTCACTTGCGAAGAGAGAGTGTATGACCAGGTGGTGGAAG___ATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCcGTGCACGTGGTCAATGTGGACATCCAGGACAACCACGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18011 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3122 TRUE 1188 NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1778746:- chr1:1682671-1711896:- chr1:1710185:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1543987:- chr1:1477053-1510243:- chr1:1479367:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Ssu72-like_protein(37%) |Ssu72(5%) 1 6 0 52 4232 ENST00000341991.7 ENST00000291386.4 upstream downstream duplicates(1),mismatches(10) CGGGACGCCGGGCTGGGATCACAATGTCGGGGGCGCCTAGGCGTAGACGTGGCGGGCGG?CCCGGGGGCGCCCTCCGGACGCGGCAG|ATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCcGTGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAGTGT___ATCCAGCACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTTTCTG...TCCTGACATTTGTTTTTACTTACAGGTGTTCTGCTGGTGACGGTAGCATTACCCAAATAAACTGTGCATATGAAATGGGAGAGGAGATGCCAAAACGCCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18012 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3122 TRUE 1188 NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1778289:- chr1:1682671-1711896:- chr1:1709728:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1543987:- chr1:1477053-1510243:- chr1:1479367:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Ssu72-like_protein(37%) |Ssu72(5%) 0 4 0 442 4232 ENST00000341426.9 ENST00000291386.4 upstream downstream duplicates(2),mismatches(12) GGCGGCGCGGCGGCGGGGCCTGCGGGCTCGGTCCGGCATGTAGACGCCCCCGCAGGCGCCCGCGGCAGCGAACG|ATCTGAATTCCAGAGAACAGGAGACCTGCCAGCCcGTGCACGTGGTCAATGTGGACATCCAGGACAACCACGAGGAGGCCACCCTGGGGGCGTTTCTCATCTGTGAGCTCTGCCAGTGT___ATCCAGCACACGGAAGACATGGAGAACGAGATCGACGAGCTGCTGCAGGAGTTCGAGGAGAAGAGTGGCCGCACCTTTCTGCACACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18013 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3122 TRUE 1188 NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1779905:- chr1:1682671-1711896:- chr1:1711344:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1545002:- chr1:1477053-1510243:- chr1:1480382:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Ssu72-like_protein(62%) |Ssu72(9%) 1 0 0 3 2081 ENST00000378625.5 ENST00000291386.4 upstream downstream none GTCACCCTTGGTGCCCTGTACTTCACTGTGGTCCTGAACTGAAGAGCTGTGTTTTTCAGGAAGACTTGGCCAGGCCGTGTTCCGTGTCTCTGGATTCAAGTCCCAGGAGTCCTGACCAGAGAGCAG|CTATACACAGAATGGGATTTTACATATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18018 ASF1A::ENSG00000253194 ENSG00000111875.8::ENSG00000253194.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASF1A ENSG00000111875.8 protein_coding + + chr6:118894152-118909171:+ chr6:118894522:+ chr6:119215316-119230336:+ chr6:119215686:+ ENSG00000253194 ENSG00000253194.2 lncRNA + + chr6:118934770-119182745:+ chr6:119179857:+ chr6:119255935-119503910:+ chr6:119501022:+ chr6:118895173,chr6:118895172,chr6:118895172 chr6:119109942,chr6:119109938,chr6:119109939 NA NA chr6:119216337,chr6:119216336,chr6:119216336 chr6:119431107,chr6:119431103,chr6:119431104 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none ASF1_like_histone_chaperone(23%)| AAA_5(79%),ASF1_hist_chap(0%),MCM(77%)| 44 44 31 346 197 ENST00000229595.6 ENST00000518570.2 downstream upstream duplicates(5),low_entropy(3),mismatches(10) AGTGCTCCCGTGTAAATAAAAAGAGGAAAAAAGTTTCTCAAGTCGCCGCTGCACGACGTCTGGCCGGCGCTGGAGCGGGGGTCTGCGCTCTCCCGAGCGGCCGCGCGCTGGACTTTATTGTGCCGCAACCAGCCCCAGTTCCCATTGTTTGTGTTTTTTTCAAAATATGGCAAAGGTTCAGGTGAACAATGTAGTGGTGCTGGATAACCCTTCTCCTTTCTACAACCCGTTCCAGTTCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAG|GGAGGATAGGGAGAAGATGTGCCTCGCTATTGAAGATCCAATGCTCCAGTGGAAGAAGATCGTCGTCAGAAAATATTAG___TCTAGTATGGAAGAAGATGGGATGACTCCACTGACAACTCTCTAGAGAGAAATGATCCTACATTTCTGTAGTTGTCTGAATTTAATGAATATTTGGAAAACAG MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE|grigrrcasllkiqcssgrrsssenislvwkkmg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18020 AMFR::ENSG00000289907 ENSG00000159461.15::ENSG00000289907.1 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AMFR ENSG00000159461.15 protein_coding - - chr16:56361452-56425545:- chr16:56407964:- chr16:56395364-56459457:- chr16:56441876:- ENSG00000289907 ENSG00000289907.1 lncRNA - + chr16:52296987-52383740:- chr16:52341156:+ chr16:52330899-52417652:- chr16:52375068:+ chr16:56405258,chr16:56405267 chr16:52336163,chr16:52336154 NA NA chr16:56439170,chr16:56439179 chr16:52370075,chr16:52370066 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 38 17 33 662 72 ENST00000290649.10 unknown upstream upstream duplicates(2),mismatches(7) GCCTCTGGTTTGCCGGACTTGTCTTTCTGCACCTGATGGTTCAGCTCTGCAAGGATCGATTTGAATAT___CTTTCCTTCTCGCCCACCACGCCGATGAGCAGCCACGGTCGAGTCCTGTCCCTGTTGGTTGCCATGCTGCTTTCCTGCTGTGGACTGGCGGCCGTCTGCTCCATCACCGGCTACACCCACGGAATGCACACCTTGGCTTTCATGGCTGCAGAG|ACAGGTCTTCACCACATCACCGAGGCCAGTCTTGAAACCCTGAGCTCAAGCCATCCGTCCACCTTGGCTTCCCAAAGTGCTAGGAATACAGACGTGAGCTACCCTCACTGGGCCCTATGAAATAGCTTCTATTCAAAGATGTCTCTTGGAGACAAAGAGATCAGGTAACTTGCCAAAAGCTATACACATAGACAGTTGTAAAATCAAGATTTGAACCCATGTATGTG LWFAGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAE|tglhhiteasletlssshpstlasqsarntdvsyphwal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18021 ENSG00000285417::LINC02331 ENSG00000285417.1::ENSG00000235269.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1705 TRUE 3124 FALSE NA ENSG00000285417 ENSG00000285417.1 transcribed_unitary_pseudogene + + chr1:206035253-206062257:+ chr1:206053265:+ chr1:206279114-206306115:+ chr1:206279114:+ LINC02331 ENSG00000235269.2 lncRNA - - chr14:53685139-53850882:- chr14:53686608:- chr14:54151857-54317600:- chr14:54153326:- chr1:206054944,chr1:206054943,chr1:206054927,chr1:206054970,chr1:206054966 chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365 NA NA chr1:206286427,chr1:206286428,chr1:206286444,chr1:206286401,chr1:206286405 chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 22 32 19 3388 1018 ENST00000582596.5 ENST00000418927.2 downstream downstream duplicates(4),mismatches(11) TGTGGAGCATCCCTGAGGCGGACTCCGGCCAGCCCGAGTGACGCGATCCAAAGAGCACTCCCGGGTAGGAAATTGCCCCGGTGGAATGCCTCACCAGAGCAGCGTGTAGCAGTTCCCTGTGGAGGATTAACACAGTGGCTGAACACCGGGAAGGAACTGGCACTTGGAGTCCGGACATCTGAAACTTG|GTGCTACATACTGCAAAGCAAAGTATCTACAACAACTGCAATAAGCCACCCTGATCATTCTTCAACCTAAAGATTTGCAACTCATCCAAGTTCAACTGGTTGAAAGAGCCTGCCTCCTCACAGCAGTGCCTGATTGACACTATGAACTGAAATACTAAAGGCACTTCTTCTTTCAGGATAACTGATTAAATGTTCTGGCTGGTAAAGCAGGTCATCACTCAACTGTTGTGGCTTTGGCAAGATGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18023 SUGP2::UPF1 ENSG00000064607.17::ENSG00000005007.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1706 FALSE NA FALSE NA SUGP2 ENSG00000064607.17 protein_coding - - chr19:18990888-19034023:- chr19:19001613:- chr19:19101697-19144832:- chr19:19112422:- UPF1 ENSG00000005007.14 protein_coding + + chr19:18831959-18868230:+ chr19:18845980:+ chr19:18942768-18979039:+ chr19:18956789:+ chr19:18996023,chr19:18996030 chr19:18835741,chr19:18835734 NA NA chr19:19106832,chr19:19106839 chr19:18946550,chr19:18946543 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Surp_module(100%)|AAA_domain(100%),RNA_helicase_(UPF2_interacting_domain)(100%),RNA_helicase_UPF1__1B_domain(100%),Type_III_restriction_enzyme__res_subunit(100%) Surp(100%)|AAA_11(100%),AAA_12(100%),AAA_19(100%),AAA_30(100%),ResIII(100%),UPF1_1B_dom(100%),UPF1_Zn_bind(100%) 21 25 21 477 273 ENST00000337018.10 ENST00000262803.10 upstream upstream duplicates(3),mismatches(10) CGCTCCTGGAGGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGCTGCCGAGGACGACCTGGCTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAG___TCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCGGGGTCGTCCCATGTCCAAAAAGAAG|GTTGGGCCCGAAGGCATCCTGCAGAACGGGGCTGTGGACGACAGTGTAGCCAAGACCAGCCAGTTGTTGGCTGAGTTGAACTTCGAGGAAGATGAAGAAGACACCTATTACACGAAGGACCTCCCCATACACGCCTGCAG___TTACTGTGGAATACACGATCCTGCCTGCGTGGTTTACTGTAATACCAGCAAGAAGTGGTTCTGCAACGGACGTGGAAATACTTCTGGC APGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGTCFPRKRISSKSLKVGMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKK|VGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18024 DPY19L3::ZNF507 ENSG00000178904.19::ENSG00000168813.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1707 FALSE NA FALSE NA DPY19L3 ENSG00000178904.19 protein_coding + + chr19:32405543-32485895:+ chr19:32411372:+ chr19:32896449-32976801:+ chr19:32902278:+ ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32382467:+ chr19:32836500-32878573:+ chr19:32873373:+ chr19:32414489,chr19:32414489 chr19:32374494,chr19:32374491 NA NA chr19:32905395,chr19:32905395 chr19:32865400,chr19:32865397 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Q-cell_neuroblast_polarisation(3%)| Dpy19(0%)| 19 14 31 125 328 ENST00000392250.7 ENST00000311921.8 downstream upstream duplicates(3),mismatches(3) AGTTTCTGAAGACTTTCCAGCCCAAGAAGAAAATGTGAAGTTGGAAAATAAATTGCCATCTG___GTTGTACCAGTAGAAGATTATGGAAGATTTTGTCATTGACAATTGGTGGAACCATTGCCCTTTGCATTGGACTTCTTACATCTGTCTACCTTGCCACGTTACATGAAAATGATTTATGGTTTTCTAATATTAAG|ATGCTCTCTGTGTGGGTATGTGTGTAGCCATCCTCCTTCTTTGAAGTCTCATATGTGGAAACATGCAAGTGACCAAAATTACAACTACGAACAAGTAAACAAGGCTATTAACGACGCGATTTCACAAAGTGGCAG___AGTTCTGGGGAAATCCCCTGGAAAGACTCAATTAAAGAGCAGTGAAGAGAGTGCAGAT VSEDFPAQEENVKLENKLPSGCTSRRLWKILSLTIGGTIALCIGLLTSVYLATLHENDLWFSNIK|mlsvwvcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18025 WDHD1::MIR493HG ENSG00000198554.12::ENSG00000258399.8 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:54944332:- chr14:55405667-55493823:- chr14:55411050:- MIR493HG ENSG00000258399.8 lncRNA + - chr14:100836269-100955006:+ chr14:100929438:- chr14:101302606-101421343:+ chr14:101395775:- chr14:54942683,chr14:54942715,chr14:54942707,chr14:54942705,chr14:54942684,chr14:54942551 chr14:100931228,chr14:100931228,chr14:100931228,chr14:100931228,chr14:100931228,chr14:100932463 NA NA chr14:55409401,chr14:55409433,chr14:55409425,chr14:55409423,chr14:55409402,chr14:55409269 chr14:101397565,chr14:101397565,chr14:101397565,chr14:101397565,chr14:101397565,chr14:101398800 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Minichromosome_loss_protein__Mcl1__middle_region(100%),WD_domain__G-beta_repeat(100%)| ANAPC4_WD40(100%),Mcl1_mid(100%),WD40(100%),eIF2A(100%)| 20 15 27 502 60 ENST00000360586.8 unknown upstream downstream duplicates(5),low_entropy(4),mismatches(3) AAAATGTATTATCTGAAACCCCAGCTATATGTCCTCCTCAAAACACTGAAAACCAAAG___GCCAAAGACCGGGTTCCAGATGTGGTTAGAAGAAAATAGAAGTAATATTTTGTCTGACAATCCTGACTTTTCAGATGAAGCAGACATAATAAAAGAAGGAATGATTCGATTTAGAGTATTGTCAACTGAAGAAAGAAAG|ATTGACTGCTCTAGGGGACATCAACTGCCATGTTGTAAGGATACTCAAGCAGTCCTGAGGAAGAGTCTATTTGTGAAGAAACTGTGGCTTCCCGCAATCAGCACCAACTTTCCAGCCATGTAAGTGAAGCAGACACTCTAGCACAGTCAAGCTTTCAGATGACTGCAACTCAACCTGACATCTTGCCTGCAACTTCACAAGAAACCCTAAGCTAAAACTGCCCCCAGTAAGCCTCT NVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERK|idcsrghqlpcckdtqavlrkslfvkklwlpaistnfpam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18026 WDHD1::MEG8 ENSG00000198554.12::ENSG00000225746.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:54944332:- chr14:55405667-55493823:- chr14:55411050:- MEG8 ENSG00000225746.13 lncRNA + - chr14:100894770-101038859:+ chr14:100929438:- chr14:101361107-101505196:+ chr14:101395775:- chr14:54942683,chr14:54942715,chr14:54942707,chr14:54942705,chr14:54942684,chr14:54942551 chr14:100931228,chr14:100931228,chr14:100931228,chr14:100931228,chr14:100931228,chr14:100932463 NA NA chr14:55409401,chr14:55409433,chr14:55409425,chr14:55409423,chr14:55409402,chr14:55409269 chr14:101397565,chr14:101397565,chr14:101397565,chr14:101397565,chr14:101397565,chr14:101398800 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Minichromosome_loss_protein__Mcl1__middle_region(100%),WD_domain__G-beta_repeat(100%)| ANAPC4_WD40(100%),Mcl1_mid(100%),WD40(100%),eIF2A(100%)| 20 15 27 502 60 ENST00000360586.8 unknown upstream downstream duplicates(5),low_entropy(4),mismatches(3) AAAATGTATTATCTGAAACCCCAGCTATATGTCCTCCTCAAAACACTGAAAACCAAAG___GCCAAAGACCGGGTTCCAGATGTGGTTAGAAGAAAATAGAAGTAATATTTTGTCTGACAATCCTGACTTTTCAGATGAAGCAGACATAATAAAAGAAGGAATGATTCGATTTAGAGTATTGTCAACTGAAGAAAGAAAG|ATTGACTGCTCTAGGGGACATCAACTGCCATGTTGTAAGGATACTCAAGCAGTCCTGAGGAAGAGTCTATTTGTGAAGAAACTGTGGCTTCCCGCAATCAGCACCAACTTTCCAGCCATGTAAGTGAAGCAGACACTCTAGCACAGTCAAGCTTTCAGATGACTGCAACTCAACCTGACATCTTGCCTGCAACTTCACAAGAAACCCTAAGCTAAAACTGCCCCCAGTAAGCCTCT NVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERK|idcsrghqlpcckdtqavlrkslfvkklwlpaistnfpam* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18027 SUPT7L::MED31 ENSG00000119760.16::ENSG00000108590.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1708 TRUE 3125 FALSE NA SUPT7L ENSG00000119760.16 protein_coding - - chr2:27650809-27663840:- chr2:27657345:- chr2:27873676-27886707:- chr2:27880212:- MED31 ENSG00000108590.11 protein_coding - - chr17:6643311-6651634:- chr17:6644659:- chr17:6546631-6554954:- chr17:6547979:- chr2:27656116,chr2:27656118 chr17:6644776,chr17:6644775 NA NA chr2:27878983,chr2:27878985 chr17:6548096,chr17:6548095 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Bromodomain_associated(100%)|SOH1(43%) Bromo_TP(100%)|Med31(2%) 19 24 18 346 309 ENST00000404798.6 ENST00000225728.8 upstream downstream duplicates(2),mismatches(4) GCAGCTCCTCTACCAGGCAGTGGCCACAATCCTGGCCCACGCGGGCTTTGACTGTGCTAATGAGAGTGTCCTGGAGACCCTAACTGATGTGGCACATGAGTATTGCCTTAAGTTTACCAAGTTGCTGCGTTTTGCTGTGGACCGGGAGGCCCGGCTGGGACAGACTCCTTTTCCTGATGTGATGGAGCAGGTATTCCATGAAGTGGGTATTGGCAGTGTGCTCTCCCTCCAGAAGTTCTGGCAGCACCGCATCAAGGACTATCACAGTTACATGCTACAG|GTACCCTCAGTGTTTACACATGTTAGAGCTGCTCCAATATGAACACTTCCGAAAGGAGCTGGTGAATGCTCAGTGTGCGAAATTTATTGATGAACAGCAGATTCTACATTGGCAGCACTATTCCCGGAAGCGGATGCGCCTTCAGCAAGCCTTGGCAGAGCAGCAACAGCAAAATAACACATCGGGAAAATGAAAAACTGGATACAAACG QLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHSYMLQ|vpsvfthvraapi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18030 PTK2::DBT ENSG00000169398.20::ENSG00000137992.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140879471:- chr8:141667999-142012315:- chr8:141889570:- DBT ENSG00000137992.15 protein_coding - + chr1:100186919-100249834:- chr1:100218644:+ chr1:100652475-100715390:- chr1:100684200:+ chr8:140875118,chr8:140875121 chr1:100212334,chr1:100212331 NA NA chr8:141885217,chr8:141885220 chr1:100677890,chr1:100677887 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none FERM_N-terminal_domain(89%)| FERM_N_2(25%)| 23 20 10 1582 520 ENST00000696786.1 unknown upstream upstream duplicates(1),mismatches(1) GAGCCAACCACCTGGGCCAGTATTATCAGGCATGGAGATGCTACTGATGTCAGG___GGCATCATTCAGAAGATAGTGGACAGTCACAAAGTAAAGCATGTGGCCTGCTATGGATTCCGCCTCAGTCACCTGCGGTCAGAGGAGGTTCACTGGCTTCACGTGGATATGGGCGTCTCCAGTGTGAGGGAGAAGTATGAGCTTGCTCACCCACCAGAGGAGTGGAA|ACGGCGAACTGCAGGAGTTGCCAGTGTTTTTCGGCCCTTTATCTCTTGGTGTGTATGTTCATCATGAGACACTGCAGGAGTTTCAACAACATCTTCTTCTGAATCTGGTAACAAG___GTAAATAAAAATCTTCTACTACTGCAACCGTG EPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWk|rrtagvasvfrpfiswcvcss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18035 ASF1A::FAM184A ENSG00000111875.8::ENSG00000111879.20 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASF1A ENSG00000111875.8 protein_coding + + chr6:118894152-118909171:+ chr6:118894522:+ chr6:119215316-119230336:+ chr6:119215686:+ FAM184A ENSG00000111879.20 protein_coding - + chr6:118959763-119149387:- chr6:119110283:+ chr6:119280928-119470552:- chr6:119431448:+ chr6:118895173,chr6:118895172,chr6:118895172 chr6:119109942,chr6:119109938,chr6:119109939 NA NA chr6:119216337,chr6:119216336,chr6:119216336 chr6:119431107,chr6:119431103,chr6:119431104 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none ASF1_like_histone_chaperone(23%)| AAA_5(79%),ASF1_hist_chap(0%),MCM(77%)| 23 7 15 346 54 ENST00000229595.6 unknown downstream upstream duplicates(1),low_entropy(1),mismatches(2) TGTGGAGTGCTCCCGTGTAAATAAAAAGAGGAAAAAAGTTTCTCAAGTCGCCGCTGCACGACGTCTGGCCGGCGCTGGAGCGGGGGTCTGCGCTCTCCCGAGCGGCCGCGCGCTGGACTTTATTGTGCCGCAACCAGCCCCAGTTCCCATTGTTTGTGTTTTTTTCAAAATATGGCAAAGGTTCAGGTGAACAATGTAGTGGTGCTGGATAACCCTTCTCCTTTCTACAACCCGTTCCAGTTCGAGATCACCTTCGAGTGCATCGAGGACCTGTCTGAAG|TTTCCCACCCAGGTTTTTGGTAGGAAGCAACCAAAACAACAATCaAAACACAACAAACACAAGGAAGAACGGGAGGAGCCTGTATCAGGAAAGCAAAACTTTTGATTTCCAGCAGACTTGAGCTTCTATCTCCAGGAAAGAACTGTGGCATACCCTCATCTCGGCTGCAAGAGAG MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE|vshpgfw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18036 POLE2::KLHDC1 ENSG00000100479.14::ENSG00000197776.8 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POLE2 ENSG00000100479.14 protein_coding - - chr14:49643555-49688422:- chr14:49683593:- chr14:50110273-50155140:- chr14:50150311:- KLHDC1 ENSG00000197776.8 protein_coding + - chr14:49693105-49753150:+ chr14:49733005:- chr14:50159823-50219868:+ chr14:50199723:- chr14:49680256 chr14:49744057 NA NA chr14:50146974 chr14:50210775 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none DNA_polymerases_epsilon_N_terminal(75%)| Dpoe2NT(54%)| 21 11 13 387 64 ENST00000539565.6 unknown upstream downstream low_entropy(1),mismatches(7) CGGAGCGGCTGCGGAGCCGGGCGCTCTCCGCCTTCAAGTTGCGGGGCTTGCTGCTCCGTGG___TGAAGCTATTAAGTACCTCACAGAAGCTCTTCAGTCTATCAGTGAATTAGAGCTTGAAGATAAACTGGAAAAGATAATTAATGCAGTTGAGAAGCAACCCT|AAAACAGGGGAACGTGGAGAGCCAAGGGTACAAAAGCAAGGAGgTCATAATTCATGCAAGAAAATAATTGAGGATAAAGGCAAACCAGAAAAACAGGAAAAAAGGAAGATTTACTTCACTGTAAGTATGAAATACAATTAAGAAAAAAGAATGAGATAATAATTATAGGCTAAACCTTAATCAACTTACTT ERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18037 RHEX::LINC02331 ENSG00000263961.8::ENSG00000235269.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RHEX ENSG00000263961.8 protein_coding + + chr1:206053173-206102449:+ chr1:206053265:+ chr1:206238882-206288197:+ chr1:206238882:+ LINC02331 ENSG00000235269.2 lncRNA - - chr14:53685139-53850882:- chr14:53686608:- chr14:54151857-54317600:- chr14:54153326:- chr1:206054944,chr1:206054943,chr1:206054927,chr1:206054970,chr1:206054966 chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365 NA NA chr1:206286427,chr1:206286428,chr1:206286444,chr1:206286401,chr1:206286405 chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 9 32 0 3388 1018 ENST00000331555.10 ENST00000418927.2 downstream downstream duplicates(3),mismatches(9) GCAGTTCCCTGTGGAGGATTAACACAGTGGCTGAACACCGGGAAGGAACTGGCACTTGGAGTCCGGACATCTGAAACTTG|GTGCTACATACTGCAAAGCAAAGTATCTACAACAACTGCAATAAGCCACCCTGATCATTCTTCAACCTAAAGATTTGCAACTCATCCAAGTTCAACTGGTTGAAAGAGCCTGCCTCCTCACAGCAGTGCCTGATTGACACTATGAACTGAAATACTAAAGGCACTTCTTCTTTCAGGATAACTGATTAAATGTTCTGGCTGGTAAAGCAGGTCATCACTCAACTGTTGTGGCTTTGGCAAGATGCCACCAAAGCAGgCCATCATGGTTGGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18039 TTC28::PITPNB ENSG00000100154.15::ENSG00000180957.19 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1710 TRUE 3127 TRUE 1189 TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28629552:- chr22:28374002-29075828:- chr22:29025540:- PITPNB ENSG00000180957.19 protein_coding - - chr22:27851669-27920134:- chr22:27860241:- chr22:28247657-28316122:- chr22:28256229:- chr22:28536367,chr22:28536369 chr22:27862829,chr22:27862829 NA NA chr22:28932355,chr22:28932357 chr22:28258817,chr22:28258817 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Phosphatidylinositol_transfer_protein(28%) |IP_trans(3%) 9 11 15 53 167 ENST00000397906.7 ENST00000335272.10 upstream downstream duplicates(2),mismatches(2) CAGAGAAGTCCTGATGGACCGGTACTGAGCAAAGCTGAATTTGTTGAGAAAGTTCGTCAGAGTAATCAGGCCTGTCATGATGGAGATTTCCACACAGCTATTGTTCTGTATAATGAAGCCCTGGCTGTTGACCCTCAGAACTGCATCTTATACAGCAATAGATCTGCAGCCTACATGAAAATCCAGCAGTATGACAAGGCACTGGATGATGCAATCAAAGCTCGACTTCTCAATCCCAAGTGGCCAAAG|AAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAG___CAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACA___ATGCGT QRSPDGPVLSKAEFVEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPK|KELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18040 TTC28::PITPNB ENSG00000100154.15::ENSG00000180957.19 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3127 TRUE 1189 TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28679622:- chr22:28374002-29075828:- chr22:29075610:- PITPNB ENSG00000180957.19 protein_coding - - chr22:27851669-27920134:- chr22:27860241:- chr22:28247657-28316122:- chr22:28256229:- chr22:28536367,chr22:28536369 chr22:27862829,chr22:27862829 NA NA chr22:28932355,chr22:28932357 chr22:28258817,chr22:28258817 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none |Phosphatidylinositol_transfer_protein(28%) |IP_trans(3%) 0 1 0 17 167 ENST00000397906.7 ENST00000335272.10 upstream downstream none GTCGCCGCCGGCGTCGGCGCCG|AAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAG___CAAGAAAAACGGATATTTACAAAC SPPASAP|KELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18042 TOGARAM1::PRPF39 ENSG00000198718.13::ENSG00000185246.18 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOGARAM1 ENSG00000198718.13 protein_coding + + chr14:44962190-45074431:+ chr14:45054549:+ chr14:45431393-45543634:+ chr14:45523752:+ PRPF39 ENSG00000185246.18 protein_coding + + chr14:45084107-45116282:+ chr14:45107451:+ chr14:45553310-45585485:+ chr14:45576654:+ chr14:45066703,chr14:45066703 chr14:45107376,chr14:45107373 NA NA chr14:45535906,chr14:45535906 chr14:45576579,chr14:45576576 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 11 12 9 63 176 ENST00000361462.7 ENST00000355765.11 downstream upstream duplicates(3),mismappers(2),mismatches(3) TCTGTTAGAAACTTACAGCAAAAG___GGTTTGGGGGAGATACCATTAGATACTCCTTCAGCAAAAGGAAGACGATCTCATACTGGCAGTGTTGGAAATACAAGATCATCATCTGTTTCTAGAGATGCTTTCAATTCAGCTGAAAG|ATTTAAAGAACATGTACAGAATAATTTGCCTAGAGATCTTTTAACTGGTGAACAGTTTATTCAGTTGCGAAGGGAATTAGCTTCTGTAAATGGTCATAGTGGTGATGATGGTCCTCCTGGTGATGATCTACCATCGGGAATTGAAGACATAACCGATCCTGCAAAG___CTAATTACAGAAATAGAAAACATGAGACATAGAATCATTGAGATTCATCAAGAAATGTTTAATTATAATGAGCATGAAGTTAGTAAAAGGTGGACATTTGAAGAAGGT___ATTAAAAGACCTTACTTTCATGTGAAACCTTTGGAAAAGGC SVRNLQQKGLGEIPLDTPSAKGRRSHTGSVGNTRSSSVSRDAFNSAEr|FKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18043 ENSG00000226266::PLA2R1 ENSG00000226266.8::ENSG00000153246.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1712 TRUE 3128 TRUE 1190 ENSG00000226266 ENSG00000226266.8 lncRNA - - chr2:159670708-159712444:- chr2:159710717:- chr2:160527219-160568955:- chr2:160567228:- PLA2R1 ENSG00000153246.13 protein_coding - - chr2:159932006-160062615:- chr2:159987358:- chr2:160788517-160919126:- chr2:160843869:- chr2:159698729,chr2:159698732 chr2:159993302,chr2:159993302 NA NA chr2:160555240,chr2:160555243 chr2:160849813,chr2:160849813 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Lectin_C-type_domain(67%) |Lectin_C(37%) 11 6 14 97 71 ENST00000453016.5 ENST00000283243.13 upstream downstream duplicates(1),mismatches(2) GCGGGCTGGAGGTACCCCACCGCGGGGTGGTGCTCTGACTGCGGGAACCGTTGAAGAGCTGCCCCCGGGGAGTCAGCGAGGCGCCACTG___GTCTCTTAGACATCTTCTCAAGATTATGCTAAGAGAAATGACTGCACCCTTTTCCTGAGCTATGGCAGTCAGACCTGGCAGTGGTAACTACTCTACAGAACTCCCAAACCTGGCAAGGATGGTGCAGATTTTGGCAGATTATGGCTTTGTCCCCACCCAGCACTGATGATATTATAAA|GCTACAGTGGTGGCTGTGTTGCCATGCGAGGAAGGCATCCACTTGGTCGCTGGGAAGTGAAGCACTGTCGGCACTTTAAGGCAATGTCCTTGTGCAAGCAGCCAGTTGAAAATCAGGAAAAAGCAGAGTATGAAGAGAGATGGCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18044 ENSG00000226266::PLA2R1 ENSG00000226266.8::ENSG00000153246.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3128 TRUE 1190 ENSG00000226266 ENSG00000226266.8 lncRNA - - chr2:159670708-159712444:- chr2:159710717:- chr2:160527219-160568955:- chr2:160567228:- PLA2R1 ENSG00000153246.13 protein_coding - - chr2:159932006-160062615:- chr2:159984073:- chr2:160788517-160919126:- chr2:160840584:- chr2:159698729,chr2:159698732 chr2:159993302,chr2:159993302 NA NA chr2:160555240,chr2:160555243 chr2:160849813,chr2:160849813 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Lectin_C-type_domain(63%) |Lectin_C(37%) 0 1 3 97 54 ENST00000453016.5 ENST00000283243.13 upstream downstream none GACTGCGGGAACCGTTGAAGAGCTGCCCCCGGGGAGTCAGCGAGGCGCCACTG___GTCTCTTAGACATCTTCTCAAGATTATGCTAAGAGAAATGACTGCACCCTTTTCCTGAGCTAT...ATGGTGCAGATTTTGGCAGATTATGGCTTTGTCCCCACCCAGCACTGATGATATTATAAA|GTATTTCATAGTGAAAAAGTTCTGATGAAAAGAACATGGAGAGAAGCTGAAGCATTTTGCGAAGAATTTGGAGCTCATCTTGCAAGCTTTGCCCATATTGAGGAAGAGAATTTTGTGAATGAGCTCTTACATTCAAAATTTAATTG___GAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18045 TTC28-AS1::UNC79 ENSG00000235954.9::ENSG00000133958.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1713 TRUE 3129 TRUE 1191 TTC28-AS1 ENSG00000235954.9 lncRNA + + chr22:27919376-28008581:+ chr22:27935230:+ chr22:28315364-28404569:+ chr22:28331218:+ UNC79 ENSG00000133958.14 protein_coding + + chr14:93333219-93707876:+ chr14:93673351:+ chr14:93799565-94174222:+ chr14:94139697:+ chr22:27947798,chr22:27947873,chr22:27947873,chr22:27947768 chr14:93669535,chr14:93669535,chr14:93669532,chr14:93669688 NA NA chr22:28343786,chr22:28343861,chr22:28343861,chr22:28343756 chr14:94135881,chr14:94135881,chr14:94135878,chr14:94136034 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 14 10 6 40 40 ENST00000454741.5 ENST00000256339.8 downstream upstream duplicates(1),mismatches(2) CGAGGGCTCCTCCCTTCAGCTTTGGTCCCTCGGGGCGTCTGGGCAGCCTACGCTTTCCG___ACTGGAATCAGCCATTTTACCAAGAAAGTTGGGTTTCTTTTACTGGCAAATAGTACTTCAAGAGCACAGTCTTATGTAAG|GAACGAGATAAATTCTACTTGTCTCGTAGTGTTGTTCTAGAACTTCTGCAGGCCCTAAAGCTCAAATCTCCTTTACCAGATACAAACCTTCTTCTGCTTGTTCAG___TTTATTTGTGCAGATGCTGGAACCAAACTAGCTGAGTCAACAATCCTGAGCAAGCAGATGATAGCCTCTGTACCTGGA___TGTGGGACTGCAGCG...TTCATGGCAGACATGCACACGCTGACCAAACTGAAG___AGCCACATGAAGACATGTTCCCAGCCTCTGCATGAAGATACCTTTGGGGGACATCTCAAAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3199-2 chr22:27920526-27920611:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18046 TTC28-AS1::UNC79 ENSG00000235954.9::ENSG00000133958.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1714 TRUE 3129 TRUE 1191 TTC28-AS1 ENSG00000235954.9 lncRNA + + chr22:27919376-28008581:+ chr22:27940171:+ chr22:28315364-28404569:+ chr22:28336159:+ UNC79 ENSG00000133958.14 protein_coding + + chr14:93333219-93707876:+ chr14:93673351:+ chr14:93799565-94174222:+ chr14:94139697:+ chr22:27947798,chr22:27947873,chr22:27947873,chr22:27947768 chr14:93669535,chr14:93669535,chr14:93669532,chr14:93669688 NA NA chr22:28343786,chr22:28343861,chr22:28343861,chr22:28343756 chr14:94135881,chr14:94135881,chr14:94135878,chr14:94136034 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none none 8 3 8 15 40 ENST00000662424.1 ENST00000256339.8 downstream upstream mismatches(2) GGGCAGCCTACGCTTTCCG___GATAAAAATGGCAGAATGAAAGAATTgTGAGTGGAACTAGAGAATAGGAAAGACATGAACCAACGCCCAAAATGAGAAAGAAGGACATATAAAGAAAAAGACAAATACAAGTGAAAAAAATAGACTAATGGA...AGAAAGTTGGGTTTCTTTTACTGGCAAATAGTACTTCAAGAGCACAGTCTTATGTAAG___GGAGCTGTACCAAGTTATTTTGGGTCAGAATTCTCCTGGGATATCTTTTTTCTTCGCCTTTTTAAACTCGTTTATTATAAAAACAATGTTACCATATGCAAAACTAGAAGAGTGTAATGAATTCCCGTGTGTCCATCATCTATCTTTAACAG|GAACGAGATAAATTCTACTTGTCTCGTAGTGTTGTTCTAGAACTTCTGCAGGCCCTAAAGCTCAAATCTCCTTTACCAGATACAAACCTTCTTCTGCTTGTTCAG___TTTATTTGTGCAGATGCTGGAACCAAACTAGCTGAGTCAACAATCCTGAGCAAGCAGATGATAGCCTCTGTACCTGGA___TGTGGGACTGCAGCGATGGAGTGTGTGAGGCAGTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3199-2 chr22:27920526-27920611:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18047 SBF2::AFF3 ENSG00000133812.18::ENSG00000144218.21 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SBF2 ENSG00000133812.18 protein_coding - - chr11:9776776-10304877:- chr11:10294015:- chr11:9798323-10326424:- chr11:10315562:- AFF3 ENSG00000144218.21 protein_coding - + chr2:99545419-100192428:- chr2:99868035:+ chr2:100161881-100808890:- chr2:100484497:+ chr11:10229286 chr2:99849162 NA NA chr11:10250833 chr2:100465624 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 7 21 2 32 64 ENST00000692716.1 unknown upstream upstream duplicates(3) CGGGGACCCGCTTCCCGAGCGCGGCGGCGGCGGCCATGGCCCGGCTGGCTGACTACTTCATCGTGGTAGGCTATGACCACGAGAAGCCAG|GTCCTTTGACGGCAGCTCGTGTACTTGAAGTATGTCACTGAAAAACGCACAGATGGGATCTACCAGATCATGAGAATGCTTTCACAGCTTTTGAAAGAGTGCTGGGTTTCTTTCCTTCAGAAGAAAAAAGAAATGCTGTATTCTCAGGTCTACCCATTTTCCAC MARLADYFIVVGYDHEKP|gpltaarvlevch* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18051 CRTC1::SUGP2 ENSG00000105662.16::ENSG00000064607.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1715 TRUE 3131 FALSE NA CRTC1 ENSG00000105662.16 protein_coding + + chr19:18683678-18782333:+ chr19:18749875:+ chr19:18794488-18893143:+ chr19:18860685:+ SUGP2 ENSG00000064607.17 protein_coding - - chr19:18990888-19034023:- chr19:18994486:- chr19:19101697-19144832:- chr19:19105295:- chr19:18753573 chr19:18994958 NA NA chr19:18864383 chr19:19105767 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Transducer_of_regulated_CREB_activity__N_terminus(100%),Transducer_of_regulated_CREB_activity_middle_domain(22%)|G-patch_domain(26%) TORC_M(21%),TORC_N(100%)|G-patch(4%) 5 9 6 252 362 ENST00000338797.10 ENST00000452918.7 downstream downstream mismatches(1) GCCGACAGCTGCCCCTATGGCACCATGTACCTCTCACCACCCGCGGACACCAGCTGGAGAAG___GACCAATTCTGACTCCGCCCTGCACCAGAGCACAATGACGCCCACGCAGCCAGAATCCTTTAGCAGTGGGTCCCAGGACGTGCACCAGAAAAGAG|GGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTCCGACAGAGGATGATGCAGATGTACAGACACAAGCGGGCCAACAAATAG___ATCAAAACCACTGATGTGAAAGATAAGCCTTGAAGCAGCA ADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQPESFSSGSQDVHQKR|gepprkgkgwvltgrstkkthsmcsdrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB regulated transcription coactivator 1 1 Yes salivary gland mucoepidermoid epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 18054 LINC01876::GPD2 ENSG00000226383.7::ENSG00000115159.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3132 TRUE 1192 LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156254778:- chr2:156868042-157111462:- chr2:157111290:- GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156568825:+ chr2:157291802-157470247:+ chr2:157425337:+ chr2:156126222,chr2:156126242 chr2:156568113,chr2:156568093 NA NA chr2:156982734,chr2:156982754 chr2:157424625,chr2:157424605 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |C-terminal_domain_of_alpha-glycerophosphate_oxidase(100%),EF-hand_domain_pair(100%),FAD_dependent_oxidoreductase(14%) |DAO(0%),DAO_C(100%),EF-hand_5(100%),EF-hand_7(100%),EF-hand_8(100%) 8 1 7 104 631 ENST00000637554.1 ENST00000310454.10 upstream upstream mismappers(1),multimappers(1) CTCGCTGCCGCCTTGCAGTTTGATCTCAGACTGCTGTGCTAGCAATCAGCGAGACTCCCTGTGAGTAGGACCCTCCGAGCCAGGTGCGGCTTATAATCTCGTGGTGCGCCGTTTTTTAAGCCGGTCGGAAAAGCGCAGTATTCGaGTGGGAGTGACCCGATTTTCCAG|TGAGAAGAGGGGATGTCCTGGCAGCATGGAGTGGAATCCGTCCTCTTGTTACAGACCCCAAATCTGCAGATACTCAGTCTATCTCCCGAAATCATGTTGTTGATATCAGTGAGAGTGGCCTTATTACTATAGCAG___GTGGAAAGTGGACAACTTATCGGTCTATGGCAGAAGATACCATAAATGCTGCTGTCAAAACTCATAATTTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18055 GPD2::LINC01876 ENSG00000115159.17::ENSG00000226383.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3133 TRUE 1193 GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156557582:+ chr2:157291802-157470247:+ chr2:157414094:+ LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156095819:- chr2:156868042-157111462:- chr2:156952331:- chr2:156568112,chr2:156568095 chr2:156126224,chr2:156126241 NA NA chr2:157424624,chr2:157424607 chr2:156982736,chr2:156982753 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none FAD_dependent_oxidoreductase(85%)| DAO(83%),FAD_binding_2(100%)| 4 1 8 491 3 ENST00000310454.10 unknown downstream downstream duplicates(1) TGTCCATATTGTGATGCCTGGTTATTACAG___CCCAGAGAGCATGGGACTTCTTGACCCAGCGACCAGTGATGGGCGAGTTATTTTCTTCTTACCCTGGCAAAAGATGACGATCGCTGGCACTACTGATACTCCAACTGATGTTACACACCATCCAATTCCTTCAGAAGAAGATATCAACTTCATTTTGAATGAAGTGCGTAATTACCTGAGTTGTGATGTTGAAG|GGTCAAGATGAGATAAAAAACCATTGAAGAGTTTTGAAGAGAGGAATTACTTGATCTAACTACTGCTTTAAAAAGATCACTCTATCT...GTGGGTTTATATATGCATACACATCAAGATAACATATAAATAGAATCATATTGTTTATAACCTTTTGAGATTGGCTTCTTTCATTCAGAAAACTGCCTTTGAGATTCATCCATGTTGTTGTGTAAAACTATACCTTGTTCCTTTCTATTGCTGAAT VHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVE|gsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18056 LINC01876::GPD2 ENSG00000226383.7::ENSG00000115159.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3132 TRUE 1192 LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156205382:- chr2:156868042-157111462:- chr2:157061894:- GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156568825:+ chr2:157291802-157470247:+ chr2:157425337:+ chr2:156126222,chr2:156126242 chr2:156568113,chr2:156568093 NA NA chr2:156982734,chr2:156982754 chr2:157424625,chr2:157424605 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |C-terminal_domain_of_alpha-glycerophosphate_oxidase(100%),EF-hand_domain_pair(100%),FAD_dependent_oxidoreductase(14%) |DAO(0%),DAO_C(100%),EF-hand_5(100%),EF-hand_7(100%),EF-hand_8(100%) 1 0 9 22 631 ENST00000635799.1 ENST00000310454.10 upstream upstream none TGCTGTGCTAGCAATCAGCGAGACTCCCTGTGAGTAGGACCCTCCGAGCCAGGTGCGGCTTATAATCTCGTGGTGCGCCGTTTTTTAAGCCGGTCGGAAAA...CCGATTTTCCAG___GCAATGCTTaCACACAGGACATAGTTCAGAAGGCATTAGAAGGCATAGAGTAAAAAG|TGAGAAGAGGtGATGTCCTGGCAGCATGGAGTGGAATCCGTCCTCTTGTTACAGACCCCAAATCTGCAGATACTCAGTCTATCTCCCGAAATCATGTTGTTGATATCAGTGAGAGTGGCCTTATTACTATAGCAG___GTGGAAAGTGGACAACTTATCGGTCTATGGCAGAAGATACCATAAATGCTGCTGTCAAAACTCATAATTTAAAAGCAGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18057 LINC01876::GPD2 ENSG00000226383.7::ENSG00000115159.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3132 TRUE 1192 LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156227967:- chr2:156868042-157111462:- chr2:157084479:- GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156568825:+ chr2:157291802-157470247:+ chr2:157425337:+ chr2:156126222,chr2:156126242 chr2:156568113,chr2:156568093 NA NA chr2:156982734,chr2:156982754 chr2:157424625,chr2:157424605 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |C-terminal_domain_of_alpha-glycerophosphate_oxidase(100%),EF-hand_domain_pair(100%),FAD_dependent_oxidoreductase(14%) |DAO(0%),DAO_C(100%),EF-hand_5(100%),EF-hand_7(100%),EF-hand_8(100%) 1 1 7 36 631 ENST00000659502.1 ENST00000310454.10 upstream upstream none CAGCGAGACTCCCTGTGAGTAGGACCCTCCGAGCCAGGTGCGGCTTATAATCTCGTGGTGCGCCGTTTTTTAAGCCGGTCGGAAAAGCGCAGTATTCGaGTGGGAGTGACCCGATTTTCCAG___GTTGATTTTTGAGTAGTGAACCAGCTTTGCATTCCTGG|TGAGAAGAGGGGATGTCCTGGCAGCATGGAGTGGAATCCGTCCTCTTGTTACAGACCCCAAATCTGCAGATACTCAGTCTATCTCCCGAAATCATGTTGTTGATATCAGTGAGAGTGGCCTTATTACTATAGCAG___GTGGAAAGTGGACAACTTATCGGTCTATGGCAGAAGATACCATAAATGCTGCTGTCAAAACTCATAATTTAAAAGCAGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18058 GPD2::LINC01876 ENSG00000115159.17::ENSG00000226383.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3133 TRUE 1193 GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156557582:+ chr2:157291802-157470247:+ chr2:157414094:+ LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156024576:- chr2:156868042-157111462:- chr2:156881088:- chr2:156568112,chr2:156568095 chr2:156126224,chr2:156126241 NA NA chr2:157424624,chr2:157424607 chr2:156982736,chr2:156982753 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none FAD_dependent_oxidoreductase(85%)| DAO(83%),FAD_binding_2(100%)| 0 2 6 491 83 ENST00000310454.10 ENST00000428651.2 downstream downstream duplicates(1) GTCCATATTGTGATGCCTGGTTATTACAG___CCCAGAGAGCATGGGACTTCTTGACCCAGCGACCAGTGATGGGCGAGTTATTTTCTTCTTACCCTGGCAAAAGATGACGATCGCTGGCACTACTGATACTCCAACTGATGTTACACACCATCCAATTCCTTCAGAAGAAGATATCAACTTCATTTTGAATGAAGTGCGTAATTACCTGAGTTGTGATGTTGAAG|GGATGGAAGAAGATACTTGGAAAAATCAGGGAAGAGTGAAGAAGATACTTCAAAAAATCGGGGAAGATTTTCATCATAAGGTCCAAGCAAAG___ATTCCTGAGCCTGAGTCTACTGACAAATATACCACATCCCCAGA VHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMTIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVE|gmeedtwknqgrvkkilqkigedfhhkvqakipepestdkyttsp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18059 GPD2::LINC01876 ENSG00000115159.17::ENSG00000226383.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3133 TRUE 1193 GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156557582:+ chr2:157291802-157470247:+ chr2:157414094:+ LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156022817:- chr2:156868042-157111462:- chr2:156879329:- chr2:156568112,chr2:156568095 chr2:156126224,chr2:156126241 NA NA chr2:157424624,chr2:157424607 chr2:156982736,chr2:156982753 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none FAD_dependent_oxidoreductase(85%)| DAO(83%),FAD_binding_2(100%)| 1 1 2 491 101 ENST00000310454.10 ENST00000635799.1 downstream downstream none GACGATCGCTGGCACTACTGATACTCCAACTGATGTTACACACCATCCAATTCCTTCAGAAGAAGATATCAACTTCATTTTGAATGAAGTGCGTAATTACCTGAGTTGTGATGTTGAAG|ATTCCTGAGCCTGAGTCTACTGACAAATATACCACATCCCCAGAGTAAGTTGGAGTCTCTTAAAATTGTCTTGCTGGCATCTAGCGGAGATTGTCCCCACAAGCATGTTCCTTATGACGGATGCCTGGGTCAGAACACATAATACA___TTCC TIAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVE|ds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18060 LINC01876::GPD2 ENSG00000226383.7::ENSG00000115159.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3132 TRUE 1192 LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156254778:- chr2:156868042-157111462:- chr2:157111290:- GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156578889:+ chr2:157291802-157470247:+ chr2:157435401:+ chr2:156126222,chr2:156126242 chr2:156568113,chr2:156568093 NA NA chr2:156982734,chr2:156982754 chr2:157424625,chr2:157424605 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |EF-hand_domain_pair(100%) |EF-hand_5(100%),EF-hand_7(100%),EF-hand_8(100%) 1 0 0 104 658 ENST00000635799.1 ENST00000310454.10 upstream upstream none CAATCAGCGAGACTCCCTGTGAGTAGGACCCTCCGAGCCAGGTGCGGCTTATAATCTCGTGGTGCGCCGTTTTTTAAGCCGGTCGGAAAAGCGCAGTATTCGaGTGGGAGTGACCCGATTTTCCAG|GAACAACTTGAAACAGCCAGGAAGTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18061 URB1::CFAP298-TCP10L ENSG00000142207.7::ENSG00000265590.10 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA URB1 ENSG00000142207.7 protein_coding - - chr21:32311018-32393012:- chr21:32359796:- chr21:33683329-33765321:- chr21:33732105:- CFAP298-TCP10L ENSG00000265590.10 protein_coding - - chr21:32402511-32612865:- chr21:32497795:- chr21:33774820-33985175:- chr21:33870105:- chr21:32358000 chr21:32503730 NA NA chr21:33730309 chr21:33876040 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Ribosome_60S_biogenesis_N-terminal(100%)| Npa1(100%)|Gal_Lectin(100%) 6 4 5 262 13 ENST00000382751.4 ENST00000674122.1 upstream downstream duplicates(2),mismatches(2) CTGCGATGCTCACCAGTGCG___ATGATGCAGAAACCATTCTTTTGAAAGCTGTTTTGCTCCAGGTCATATGCCTCTACCAGAAGGTGGTCCCCCACGTGGTCATGCAGTACAACTTTGACTTCAGCAAGCTCCTGAAAG___GTGTCATCTCTGAGCAGGGCCTTCGAGAGGAGGTGCCTCCCATTCTGCAGCACCACATGCTGAAGGTGGCCCTGGAGCTGCCGGCCAGCAAGTTTCTGTGGTTAAAGGCACAG|ATGGGACTTGTTCCTCCTTGCCTTCCGCCATGACTGTGAGACCTCCTAGCCATGTGGAACT___TTGCACCTTCAAATGCCAAGTAAGACAAAGAAACTGGCTCACTCCCTCCAACA CDAHQCDDAETILLKAVLLQVICLYQKVVPHVVMQYNFDFSKLLKGVISEQGLREEVPPILQHHMLKVALELPASKFLWLKAQ|mglvppclpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18065 WDHD1::LINC01500 ENSG00000198554.12::ENSG00000258583.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3135 TRUE 1194 WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:55013485:- chr14:55405667-55493823:- chr14:55480203:- LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:58948313:+ chr14:59113349-59650965:+ chr14:59415031:+ chr14:55013402,chr14:55013414 chr14:58915145,chr14:58915133 NA NA chr14:55480120,chr14:55480132 chr14:59381863,chr14:59381851 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none WD_domain__G-beta_repeat(44%)| WD40(97%)| 8 1 5 778 9 ENST00000360586.8 ENST00000648996.1 upstream upstream mismatches(1) GGAAAACATGCCTGCCACACGGAAGCCAATGAGATATGGGCATACAGAGGGACACACGGAGGTCTGTTTTGATGATTCTGGGAG___TTTTATTGTGACTTGTGGAAGTGATGGTGATGTGAGGATTTGGGAAGACTTGGATGATGATGATCCTAAGTTCATTAATGTTGGAGAAAAGGCATATTCATGTGCTTTGAAG|GTTTCCACGGCAACAGTGGCAGCAATTCA MPATRKPMRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRIWEDLDDDDPKFINVGEKAYSCALK|vstatvaai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18066 WDHD1::LINC01500 ENSG00000198554.12::ENSG00000258583.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3135 TRUE 1194 WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:55013485:- chr14:55405667-55493823:- chr14:55480203:- LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:59009031:+ chr14:59113349-59650965:+ chr14:59475749:+ chr14:55013402,chr14:55013414 chr14:58915145,chr14:58915133 NA NA chr14:55480120,chr14:55480132 chr14:59381863,chr14:59381851 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion medium none WD_domain__G-beta_repeat(44%)| WD40(97%)| 2 0 3 778 5 ENST00000420358.2 ENST00000659176.1 upstream upstream duplicates(1),mismatches(1) GCGAGCCGAAGCGCGGGAAGCAGCTCTTGTGGATCCTCAGTGGCGGAGGCTCGGTCACCCGG___TTTTATTGTGACTTGTGGAAGTGATGGTGATGTGAGGATTTGGGAAGACTTGGATGATGATGATCCTAAGTTCATTAATGTTGGAGAAAAGGCATATTCATGTGCTTTGAAG|AAGGAAGACGTTGGAGAATTCACATGCTATTTTAGCTGGCTCTGTGATTGCAATCACACAAATCATTACATTCCAGCGAGATCCCATCAACAGAAGGTTTTTCCATTTCAGTCTGTCAAG___CAAAGCCCAGgGTCTTCCCTGGAGAAGAGTGCTGATGACGAGGATTCATGTCTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18067 WDHD1::LINC01500 ENSG00000198554.12::ENSG00000258583.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3135 TRUE 1194 WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:55026711:- chr14:55405667-55493823:- chr14:55493429:- LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:58948313:+ chr14:59113349-59650965:+ chr14:59415031:+ chr14:55013402,chr14:55013414 chr14:58915145,chr14:58915133 NA NA chr14:55480120,chr14:55480132 chr14:59381863,chr14:59381851 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none WD_domain__G-beta_repeat(22%)| WD40(0%)| 1 3 1 661 9 ENST00000360586.8 ENST00000666714.1 upstream upstream duplicates(1) GAGGCTCGGTCACCCGG___GTAAAGGAAAACATGCCTGCCACACGGAAGCCAATGAGATATGGGCATACAGAGGGACACACGGAGGTCTGTTTTGATGATTCTGGGAG|GTTTCCACGGCAACAGTGGCAGCAATTCAGTG...CAGTCTGTCAAG___CAAAGCCCAGgGTCTTCCCTGGAGAAGAGTGCTGATGACGAGGATTCATGTCTCACAACCCAGCACACAGGAATGATGTCACACAG...AAGAAATTGAAAGGTCAAATCCGGGTCTACTCACTCCAGGAAATTTCCTGATCCAATCCACCCAGACcCCTAGATCCTTCAGGCCCTACACAGGCCTAAAT...AGAAAGCCAGAGAAAGGGATTCACTTAACAACGGATAACCTTGTTGTATCATAAATTACAAGAAGAAAGCCAATCATCTTTCAAGCTGCATCATCATAAAC MPATRKPMRYGHTEGHTEVCFDDSGr|fprqqwqqfs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18068 WDHD1::LINC01500 ENSG00000198554.12::ENSG00000258583.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3135 TRUE 1194 WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:55013485:- chr14:55405667-55493823:- chr14:55480203:- LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:59079575:+ chr14:59113349-59650965:+ chr14:59546293:+ chr14:55013402,chr14:55013414 chr14:58915145,chr14:58915133 NA NA chr14:55480120,chr14:55480132 chr14:59381863,chr14:59381851 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none WD_domain__G-beta_repeat(44%)| WD40(97%)| 0 1 2 778 2 ENST00000360586.8 ENST00000663641.1 upstream upstream none GGAAAACATGCCTGCCACACGGAAGCCAATGAGATATGGGCATACAGAGGGACACACGGAGGTCTGTTTTGATGATTCTGGGAG___TTTTATTGTGACTTGTG...GAAGACTTGGATGATGATGATCCTAAGTTCATTAATGTTGGAGAAAAGGCATATTCATGTGCTTTGAAG|GAGATACTCCCAAAGTCCCATCCAGTTATATC...TCTTGGTGATGGGTAGTTATCTCCAAGTGTGGCTCCTGGGGTCAGATCACCTACAGTCTAAGAGAAGGTTCTTTTTCTCCGCCAATGGTGATAGATTTGGC EDLDDDDPKFINVGEKAYSCALK|eilpkshpvi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18069 WDHD1::LINC01500 ENSG00000198554.12::ENSG00000258583.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3135 TRUE 1194 WDHD1 ENSG00000198554.12 protein_coding - - chr14:54938949-55027105:- chr14:55026711:- chr14:55405667-55493823:- chr14:55493429:- LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:59094555:+ chr14:59113349-59650965:+ chr14:59561273:+ chr14:55013402,chr14:55013414 chr14:58915145,chr14:58915133 NA NA chr14:55480120,chr14:55480132 chr14:59381863,chr14:59381851 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none WD_domain__G-beta_repeat(22%)| WD40(0%)| 1 0 1 661 5 ENST00000360586.8 ENST00000662717.1 upstream upstream none GAGGCTCGGTCACCCGG___GTAAAGGAAAACATGCCTGCCACACGGAAGCCAATGAGATATGGGCATACAGAGGGACACACGGAGGTCTGTTTTGATGATTCTGGGAG|CAAAGCCCAGgGTCTTCCCTGGAGAAGAGTGCTGAT MPATRKPMRYGHTEGHTEVCFDDSGs|kaqglpwrrvl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18074 SLC38A9::CHD6 ENSG00000177058.12::ENSG00000124177.16 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC38A9 ENSG00000177058.12 protein_coding - - chr5:55625845-55773194:- chr5:55697846:- chr5:54921673-55069022:- chr5:54993674:- CHD6 ENSG00000124177.16 protein_coding - - chr20:41402083-41618384:- chr20:41426153:- chr20:40030723-40247023:- chr20:40054793:- chr5:55684205,chr5:55684223 chr20:41430507,chr20:41430523 NA NA chr5:54980033,chr5:54980051 chr20:40059147,chr20:40059163 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 1 8 3 612 103 ENST00000396865.7 ENST00000373233.8 upstream downstream mismatches(1) CTTCTTCAGTGCTTAGAGTGTGAGAAAAATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCATGAAAGAGATCCTGGACCTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAG|GAGAGTTCCAGTGATGGAGGTGATGGCGTTTTTAGCGAAAAGAAGGATGACAGCCGGGCAG___CCCAGGATGGCTCCGACCCAGACAAATCGCCCTGGCCAGTTTCCTCCGCCCTCACAGCTCGTCTCAGACGTCTGGTCACTGTTTACCAGCGCTGCAACCGCAAGGAACTGTGCCGGCCTGAAATTCTGGGACCAGGTAACCAAGGATATTGGGTTCAGGAAGAGATGTTCAGGAGAACCTCAGAAATGGACCTCATCAACAAGGAAGCCCAAAAGAG___GTGGACTAGGAGAGAACAAGCAGACTTCTATAGAA MANMNSDSRHLGTSEVDHERDPGPMNIQFEPSDLRSKr|rvpvmevmaflakrrmtagqprmaptqtnrpgqfpppsqlvsdvwslftsaatarncaglkfwdqvtkdigfrkrcsgepqkwtsstrkpkrgglgenkqtsi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18075 EVA1C::URB1 ENSG00000166979.13::ENSG00000142207.7 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EVA1C ENSG00000166979.13 protein_coding + + chr21:32412006-32515397:+ chr21:32501495:+ chr21:33784314-33887707:+ chr21:33873805:+ URB1 ENSG00000142207.7 protein_coding - + chr21:32311018-32393012:- chr21:32359705:+ chr21:33683329-33765321:- chr21:33732014:+ chr21:32503730 chr21:32358000 NA NA chr21:33876040 chr21:33730309 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Galactose_binding_lectin_domain(100%)| Gal_Lectin(100%)| 4 2 6 40 164 ENST00000300255.7 unknown downstream upstream none TGTTTGCCAGGCGTGAAAAAATACCTCACTGTGACCTACGCATGTG___TTCCCAAGAACATACTCACAGCGATTGATCCAGCCATTGCTAATCTAAAACCTTCTTTGAAGCAGAAAGATGGTGAATATG|GTTCTGAGCCAATTAGCAATTCATCAGGCCAAGAAGCCACCCGGCCCAGCAGGTAAGCTTAGGGCAGAAGACTGGGAGTTCTGCTTCCTACCTGTGCCTTTAACCACAGAAACTTGCTGGCCGGCAGCTCCAGGGCCACCTTCAGCATGTGGTGCTGCAGAATGGGAGGCACCTCCTCTCGAAGGCCCTGCTCAGAGATGACACCTATGGGTGAAAAAGAGGCAGGCTGAAAAAAGTCACATGGACGTGGGTGCCCAACAATTGCTGCCCTGGCCAGAAGGACAAGGAACTCACCATGGAGAAAGAAAAAG CLPGVKKYLTVTYACVPKNILTAIDPAIANLKPSLKQKDGEY|gsepisnssgqeatrpsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18076 DDX23::ASB8 ENSG00000174243.11::ENSG00000177981.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3137 TRUE 1195 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48852084:- chr12:49223539-49246625:- chr12:49245867:- ASB8 ENSG00000177981.11 protein_coding - - chr12:48147789-48181213:- chr12:48157745:- chr12:48541572-48574996:- chr12:48551528:- chr12:48849922,chr12:48849932 chr12:48171678,chr12:48171685 NA NA chr12:49243705,chr12:49243715 chr12:48565461,chr12:48565468 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),SOCS_box(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),SOCS_box(100%) 1 9 0 815 24 ENST00000308025.8 ENST00000539503.5 upstream downstream none AAACGGGAAAGATGGCGACGGCTCCGCGACGTTGAGGCCGCGTTGGGCGGTTCAGACTCAGGGTG|GACCAAGACCCGAACCCTGCGGCTGTGGCCGAGAACGCTGCACTGAGCCTGCGCGCAAAGCCTCTGAGTAAAAGGAGAAAGTAACCCCCTAACTAGGCCTCTGGAGGGCGAAAGCTGCTGCACAAGTCTGCGCAGGCGCGCCCCGCTGACGAACACTCATCAGTGCGCAGGCGCCCATCTTAGTTGGTCTTCTAGTCCGGTAAACAGAGGGCCTGCCCCCGACAGCTTCTGCTTCCGGGTCACGCCTTGACAGCGGCTTTCAACCCCCACCTCAGCCCAGCAATTCG___GCAGTTTGGAGCATGTGAACACCTTGAGCCTTGATGAGTTCCAGTAT...ACAGAGCTGTgttACtCTTTGAATTGAGGAAAAATGGCACCATGCCACGAGAGGTGGCCAGAGACCCGCAGCTATGTGAAAAACTGACTGTTCTGTGCTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18077 DDX23::ASB8 ENSG00000174243.11::ENSG00000177981.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3137 TRUE 1195 DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48852084:- chr12:49223539-49246625:- chr12:49245867:- ASB8 ENSG00000177981.11 protein_coding - - chr12:48147789-48181213:- chr12:48153529:- chr12:48541572-48574996:- chr12:48547312:- chr12:48849922,chr12:48849932 chr12:48171678,chr12:48171685 NA NA chr12:49243705,chr12:49243715 chr12:48565461,chr12:48565468 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),SOCS_box(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),SOCS_box(100%) 0 0 0 815 182 ENST00000308025.8 ENST00000317697.8 upstream downstream mismatches(1) AAACGGGgAAGATGGCGACGGCTCCGCGcCGTTcAGGCCGCGTcGGctGcTTCAGACTCAGGGTG|GCAGTTTGGAGCATGTGcACcCCTTGAGCCTTGATG...CCGAACAAcTGCTGCCATCCcTTCCTTCCCACATGATAATGTAGAGGACCTCATCAGAGGG___GGAGCAGATGTGAACTGCACTCATGGCACACTGAAGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18078 HELLS::TBC1D12 ENSG00000119969.16::ENSG00000108239.9 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94558195:+ chr10:96305086-96373662:+ chr10:96317952:+ TBC1D12 ENSG00000108239.9 protein_coding + + chr10:94402541-94536332:+ chr10:94497055:+ chr10:96162298-96296089:+ chr10:96256812:+ chr10:94562342 chr10:94493907 NA NA chr10:96322099 chr10:96253664 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 7 1 2 258 101 ENST00000698800.1 ENST00000225235.5 downstream upstream none GAACGGCCCGCGGGCAGCGGCG___GCTCGGAGGCTCCAGCAATGGTTGAACAACTGGACACTGCTGTGATTACCCCGGCCATGCTAGAAGAGGAAGAACAGCT...GGAAGATGCTGGAAAAG___GCTCGCATGTCTTGGGATAGAGAGTCGACAGAAATTCGGTACCGTAGACTTCAACATTTGCTTGAAAAAAGCAATATcTACTCCAAATTTTTATTGACGAAAATGGAACAGCAACAATTAGAG___GAACAGAAGAAGAAAGAAAAATTGGAGAGAAAAAAGGAGTCTTTAAAAGTTAAAAAG|AAATTAAGGAAGCACATAAAAGAAAAAGAATCATGAAAGAACGATTTAAGCAGGAAGAAAATATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTGCCCAATTGGGAAGTAAT___GCGTAGTACAAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTtCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAAC...AACAAGTTCAGAGAATGATACAGAAG___GTGTATCTGTTGCTGATCGAGAGGCCAGTCTGGAATTAATTAAGTTGGACATAT-CCGTACATTTCCATCTCTCTA KMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKK|klrkhikekes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96348147 FALSE 96281712 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18079 MGA::FMN1 ENSG00000174197.19::ENSG00000248905.10 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41708208:+ chr15:41913332-42065279:+ chr15:42000406:+ FMN1 ENSG00000248905.10 protein_coding - + chr15:32765544-33194714:- chr15:33031225:+ chr15:33057745-33486915:- chr15:33323426:+ chr15:41710163,chr15:41710163,chr15:41710162 chr15:32980039,chr15:32980043,chr15:32980035 NA NA chr15:42002361,chr15:42002361,chr15:42002360 chr15:33272240,chr15:33272244,chr15:33272236 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none T-box(100%)| T-box(100%)| 2 1 5 38 19 ENST00000570161.6 unknown downstream upstream duplicates(2) CAtGAAG___TGGGCTTAAAATTGAATTCAGTGGATCCAACAATGAGCATTGATCTTAAATACTTGGGAGTACAGTTACCTTTGGCTCCAGCTACTAGCTTTCCTTTTTGGAACCTTACAGGAACCAACCCTGCCTCTCCTG___ATGCGGGATTTCCCTTTGTTTCTAGGACAGGGAAAACCAATGATTTCACTAAGATCAAGGGATGGAGGGGAAAATTTCATAGTGCTTCTGCATCTAGGAATGAAG|CATACTATCCAAACTCAATAAATGTCCATCGAGGAAGACAAAAAACCATCATGATACACAAGCCTAAGCTTTCTACCATCAGGAGGAGCCAGCACTGTGGAGAGG...GCAGATCTGACTCAGGCCCAGTCCTCTCCAGAGGAGCcGCCCCAATTAGTGGTTTCCTGAAATACAGACCTCGTGGCATGACCAGTCAGCACCAATTCATCCCCACCCACAGGTTTTTTTCCACTTGGCCATTACTATCCCCATTAAACCTTTAGCAATA hEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHSASASRNE|ayypnsinvhrgrqktimihkpklstirrsqhcge NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-626 chr15:41691585-41691678:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18081 FAM53A::STK3 ENSG00000174137.14::ENSG00000104375.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM53A ENSG00000174137.14 protein_coding - - chr4:1617915-1684313:- chr4:1668667:- chr4:1619642-1686040:- chr4:1670394:- STK3 ENSG00000104375.17 protein_coding - + chr8:98371228-98942827:- chr8:98452190:+ chr8:99383456-99955055:- chr8:99464418:+ chr4:1657966,chr4:1657974 chr8:98446067,chr8:98446059 NA NA chr4:1659693,chr4:1659701 chr8:99458295,chr8:99458287 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Family_of_FAM53(8%)| FAM53(0%)| 2 3 3 18 5 ENST00000308132.11 unknown upstream upstream none GCGGCaGGCAGTCTTCTCGCTCCGCcCCCCCGCGGCCGCGCTCAG___GCACAAATCCTGAAGAGCCCGaGGGCGTGGACTGCTCATCTGTAAAGAAAGTGGAGACATGACCTTGAGATTTGGCTGACCCAGCAATGCTGGGGCCTTCGCAAGTCTGATGTTCCAGGACTCCAGTGCCTGTTGGTGTGGACGGAGGACACGGGGCCCCGACCATGGTCACACTCATCACTGAGAAGCTGCAGAGCCAGAGCCTGGACGACCTCACCTGCAAGGCGGAGGCTGGCCCG|AACTGCACATCCTTCAGTGAGTAGAGCATGATTTTGAACACTGGGGAGGTGATTCAGTAAATAAGCGGAGGAAAAATATAACAGCG___ATAATAAACTGTGGACAAAACACAAAAAtCAACTACTG...GACATAcGAAGAATCTGGAAAATGCAATCCACCCCCAATGGAAAAGACAATCAACAGAAGCCAACCTTGATACGACCCAGATATCAGAAATAACAAGACTT MVTLITEKLQSQSLDDLTCKAEAGP|nctsfse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18098 ATP2B1::ENSG00000258077 ENSG00000070961.17::ENSG00000258077.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP2B1 ENSG00000070961.17 protein_coding - - chr12:89588049-89709366:- chr12:89655679:- chr12:89981826-90103143:- chr12:90049456:- ENSG00000258077 ENSG00000258077.2 lncRNA - - chr12:75563202-75984015:- chr12:75631314:- chr12:75956982-76377795:- chr12:76025094:- chr12:89651948,chr12:89651956 chr12:75964895,chr12:75964900 NA NA chr12:90045725,chr12:90045733 chr12:76358675,chr12:76358680 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Cation_transporter/ATPase__N-terminus(25%)| Cation_ATPase_N(0%)| 4 1 0 97 28 ENST00000551310.2 ENST00000552856.1 upstream downstream none TGTATATCTCATGATTGATATGGAGAAACTAGTCATGGGCCAAAGGTCAAGATACTTCTCTGGGAAATGTTGCTGCTGATGCTGCTTTACAAAGTCATACA...GCGGGCTCTCATGGAGCTCAGGTCCACAGATGCATTACGAAAAATACAGGAAAGCTATGGAGATGTCTATGGAATTTGCACCAAATTGAAAACATCTCCCAATGAAG|GTAAAGAAACCAAGGCTTAGAGACCTGCTCACAGTCGTTTCGTGAGGGAATGCAACATCTGGGTCTAGGGTCCAAATCTATCTCTGCTGTGAAGAGGAACTCATACAGGAGATCTACATGATTACCAATTCTTGGCCTTGCAGTGGAG RALMELRSTDALRKIQESYGDVYGICTKLKTSPNE|gketka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18101 FMO4::FMO1 ENSG00000076258.10::ENSG00000010932.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FMO4 ENSG00000076258.10 protein_coding + + chr1:171314183-171342084:+ chr1:171316327:+ chr1:171283322-171311223:+ chr1:171285466:+ FMO1 ENSG00000010932.17 protein_coding + + chr1:171248471-171285978:+ chr1:171258082:+ chr1:171217610-171255117:+ chr1:171227221:+ chr1:171323738,chr1:171323736 chr1:171256043,chr1:171256038 NA NA chr1:171292877,chr1:171292875 chr1:171225182,chr1:171225177 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none |Flavin-binding_monooxygenase-like(100%) |FMO-like(100%),K_oxygenase(100%),NAD_binding_8(100%),Pyr_redox_2(100%),Pyr_redox_3(100%) 1 3 0 38 9 ENST00000367749.4 ENST00000367750.7 downstream upstream none GCCAGCCCCAGGCCTCTACCTAGTGGCCTGGAAATTCAAGTATTCTTATTGGTGGAGGCCATTTGTTTCTGATTAGAAGCTGTCTAAACCTCCTACTCCTCAACTCAAAGGAAAACACAG|GAGAACATGGCCAAGCGAGTTGCCATTGTGGGAGCTGGGGTCAGCGGCCTGGCCTCCATCAAGTGCTGTCTGGAAGAAGGACTGGAGCCCACCTGCTTTGAGAGGAGCGATGACCTTGGGGGGCTGTGGAGATTCACC___GAACATGTTGAAGAAGGCAGAGCCAGTCTCTACAAGTCTGTGGTTTCCAACAGCTGCAAGGAGATGTCTTGTTACTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18102 CCSER1::DKK2 ENSG00000184305.16::ENSG00000155011.9 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90468354:+ chr4:91048545-92526446:+ chr4:91389505:+ DKK2 ENSG00000155011.9 protein_coding - + chr4:106921802-107283806:- chr4:107065826:+ chr4:107842959-108204963:- chr4:107986983:+ chr4:90579324,chr4:90579315 chr4:106962936,chr4:106962924 NA NA chr4:91500475,chr4:91500466 chr4:107884093,chr4:107884081 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 1 2 0 21 3 ENST00000509176.6 unknown downstream upstream none ATATAGAAGAAGTTAATAGTTTAAGAAAGCAAAGAGCAGGTTCTTCATCTTCAAAAATGAACAGTTTG___GATGTTTTGAATAATTTGGGATCTTGTGAACTG...CCGCAGTAGTTCTTACTCCTATGGAACCAATGATAGAAATGAAGAAAAGAGAAGAACCAGAATTTCCTGAGCCTTCCAAACA|TTTGAGATCCTCCAATCAAGAAATGAATCCCAGGGAATACACTGACGACAAACTTATCAAAAATACATTAAGAAGTGAACTATTATGTGCTATGTCATCTGTGCCTAAATGATGCCTACTAAAGAAATGTCATTCAAAATATATTTGCTGGATG...ATGAATAAACgAAATTATTTTATAGGTATTCACTGTCCAAAAGTTATTCTTGACAGTGGATTTGTACTGACTACTGTTATTTAAATCATAATAAAATATCA AVVLTPMEPMIEMKKREEPEFPEPSKh|lrssnqemnpreytddklikntlrsellcamssvpk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18103 PATJ::NFIA ENSG00000132849.22::ENSG00000162599.18 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PATJ ENSG00000132849.22 protein_coding + + chr1:61742477-62178675:+ chr1:61763179:+ chr1:62208149-62644347:+ chr1:62228851:+ NFIA ENSG00000162599.18 protein_coding + - chr1:60865259-61462788:+ chr1:61090832:- chr1:61330931-61928460:+ chr1:61556504:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon inversion/3'-3' high none L27_2(96%)| L27_2(7%)| 2 1 0 238 3 ENST00000371158.6 unknown downstream downstream none CCCGCCCGACCCGGGCTCCCACCTGCTCCTCCAGCGCACCAG___GTGTCTTTAAGAGTGATTGAAGAGAATAATTCAAAATGCCTGAAAATCCTGCTACAG...GTGCTGCAGGTACTTGATCGCCTGAAAATGAAATTGCAGGAGAAGGGTGACACGTCGCAGAATGAGAAGTTATCTATGTTTTATGAGACACTAAAGAGTCC...TTCAGCAGTCCATCAAGCAACTGAAGGGTCAA|TCTTCCTGTTGCGCGCACAGAGAAGCAGCCATTACTGCGGTCCCGTGAAAACCAATGGCCAAACATTTGGCTGGCATTCAGGCATAACAAGGGATTCTG QQSIKQLKGQ|ssccahreaaitavp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18106 GIT2::IFT81 ENSG00000139436.22::ENSG00000122970.16 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GIT2 ENSG00000139436.22 protein_coding - - chr12:109929804-109996389:- chr12:109980952:- chr12:110367609-110434194:- chr12:110418757:- IFT81 ENSG00000122970.16 protein_coding + - chr12:110124335-110218793:+ chr12:110135863:- chr12:110562140-110656598:+ chr12:110573668:- chr12:109979032,chr12:109979042 chr12:110148498,chr12:110148505 NA NA chr12:110416837,chr12:110416847 chr12:110586303,chr12:110586310 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%)| Ank(100%),Ank_2(100%),Ank_4(100%),Ank_5(100%),ArfGap(100%)| 0 1 1 128 3 ENST00000355312.8 unknown upstream downstream mismappers(1) TGATTATGCAAG___GCAAGGAGGGCACCATGAGCTGGCAGAGCGCCTCGTGGAAATACAGTATGAGCTAACGGACAGACTAGCCTTCTATCTCTGTGGCAGGAAACCAG|ACAAAGTCTCACTCTGTTGCCTAAGCTGGAGTGTGGTGGCGTGATCTCAGCTCACCTCAACCTCCACTTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTG DYARQGGHHELAERLVEIQYELTDRLAFYLCGRKP|dkvslcclswsvva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18110 RABGAP1L::CACYBP ENSG00000152061.24::ENSG00000116161.18 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1716 FALSE NA FALSE NA RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174752354:+ chr1:174128548-174964445:+ chr1:174721492:+ CACYBP ENSG00000116161.18 protein_coding + + chr1:174999163-175012027:+ chr1:175009923:+ chr1:174968300-174981163:+ chr1:174979059:+ chr1:174799466,chr1:174799464 chr1:175009584,chr1:175009579 NA NA chr1:174768604,chr1:174768602 chr1:174978720,chr1:174978715 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Kinesin_protein_(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),Rab-GTPase-TBC_domain(96%)|SGS_domain_(73%) 7tm_1(100%),7tm_4(100%),DUF3694(100%),PID(100%),RabGAP-TBC(85%)|SGS(8%) 8 11 7 63 2352 ENST00000681986.1 ENST00000613570.4 downstream upstream mismatches(4) GCTACCGGACCTGCATAGCCATTTTTCTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTTCTCACTCTTTTTACTGCCAAGTTCCCACTCTGCATGGTGTTCCACATCATTGACTTACTGCTTTGTGAG___GGTTTGAACATAATCTTTCATGTAGCTTTGGCTCTCCTAAAG|GAAGCCCTCCTATGACACTGAAACAGATCCTAGTGAGGGATTGATGAATGTTCTAAAGAAAATTTATGAAGATGGAGACGATGATATGAAGCGAACCATTAATAAAGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGAGACACGGAATTTTGAGACTTTAAAGTCGTTTTGGG LPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLK|eall* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18112 NARS2::GAB2 ENSG00000137513.11::ENSG00000033327.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NARS2 ENSG00000137513.11 protein_coding - - chr11:78435620-78575194:- chr11:78465876:- chr11:78146666-78286239:- chr11:78176922:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78218756:- chr11:77926339-78129394:- chr11:77929802:- chr11:78465082,chr11:78465112 chr11:78219329,chr11:78219354 NA NA chr11:78176128,chr11:78176158 chr11:77930375,chr11:77930400 NA NA sense sense out-of-frame CDS/splice-site 3'UTR deletion/read-through medium none OB-fold_nucleic_acid_binding_domain(100%),tRNA_synthetases_class_II_(D__K_and_N)_(75%)| tRNA-synt_2(77%),tRNA_anti-codon(100%)| 9 7 9 427 241 ENST00000281038.10 ENST00000361507.5 upstream downstream duplicates(1),mismappers(1) TAGAACATATGCTAAAAAACAACTTTTTAAT___CATTTCTTATACTGAAGCAGTGGAGATCTTAAAGCAAGCATCCCAGAACTTCACCTTTACCCCAGAG___TGGGGTGCTGACCTACGGACTGAACATGAAAAGTACCTGGTGAAGCACTGTGGCAACATACCTGTCTTCGTTATTAATTATCCATTAACACTCAAGCCTTTCTACATGAGGGATAATGAAGATGGCCCTCAGCACACG|GAGAGAAGCAAGGCCACTAAAAGAGGAGATGGTGGAGACGGAGGCTCAGCAGTGGTCTTGAGGGGTAAAGGACTTAGATGCCCAGATGAAGAGGGAAAGCTGACATCTGCAGGGAACCCACTTTGAGGCTGAGGCCATGGCAGGACAGCTGCTGTGGGGTGCAGAGGCAGAAGATGAAGGACAAAAGGAAGGGAAAACTGATGGCCAACCTAGAGCAGCAAGGAGCAGGG EHMLKNNFLIISYTEAVEILKQASQNFTFTPEWGADLRTEHEKYLVKHCGNIPVFVINYPLTLKPFYMRDNEDGPQHT|erskatkrgdggdggsavvlrgkglrcpdeegkltsagnpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18113 PTK2::TGFBR3 ENSG00000169398.20::ENSG00000069702.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140674298:- chr8:141667999-142012315:- chr8:141684397:- TGFBR3 ENSG00000069702.11 protein_coding - + chr1:91680343-91906335:- chr1:91711083:+ chr1:92145900-92371892:- chr1:92176640:+ chr8:140670162,chr8:140670165 chr1:91708219,chr1:91708216 NA NA chr8:141680261,chr8:141680264 chr1:92173776,chr1:92173773 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none FERM_N-terminal_domain(100%),FERM_central_domain(100%),Protein_kinase_domain(100%)| FERM_M(100%),FERM_N_2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 4 2 16 3245 26 ENST00000696786.1 unknown upstream upstream mismatches(2),multimappers(2) TCTCTCGAGGCAGTATTGACAGGGAGGATGGAAGTCTTCAGGGTCCG___ATTGGAAACCAACATATATATCAGCCTGTGGGTAAACCAG___ATCCTGCAGCTCCACCAAAGAAACCGCCTCGCCCTGGAGCTCCCGGTCATCTGGGAAGCCTTGCCAGCCTCAGCAGCCCTGCTGACAGCTACAACGAGGGTGTCAAG|GAAGCAGCTGGTCCCACAGCCACACATGAAGCTCCTCATGGCTCTCTACCACTGTCCACTAAGCCCCAACCCTGATGGTGAATGCCTACAAGGCTAAGGCATCACCGCCGCAAAAGCAAACCTAGGAATATAGTCTAAATCACTGTATATGTGCTCCCCAATGATTATGATCATATCTGC SRGSIDREDGSLQGPIGNQHIYQPVGKPDPAAPPKKPPRPGAPGHLGSLASLSSPADSYNEGVK|eaagptatheaphgslplstkpqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18123 MCM9::ENSG00000253194 ENSG00000111877.18::ENSG00000253194.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3145 FALSE NA MCM9 ENSG00000111877.18 protein_coding - - chr6:118813442-118935162:- chr6:118921216:- chr6:119134605-119256327:- chr6:119242381:- ENSG00000253194 ENSG00000253194.2 lncRNA + - chr6:118934770-119182745:+ chr6:118943727:- chr6:119255935-119503910:+ chr6:119264892:- NA NA NA NA NA NA NA NA sense antisense unknown exon intron duplication/5'-5' medium none MCM_OB_domain(91%)| MCM_OB(45%)| 4 2 4 5 5 ENST00000436788.2 unknown upstream downstream duplicates(1),mismappers(1) AAGGACATCATTCCTCTCTGCTCTGTGCTGGTGACACCGTGATTGGAGTCACTGATTGTAGTCTGCTGTCTTCTGAGGGTCCTCAATGTTTcCATgGGCCG...CCTGAATTGGGAGGGTACTTGAAACCCATACTCAATGAAGAACTATACATGGTTAGCATGGAGAACCCTGAGGAAGGACATGACAGCCAACTTTCAATAGT...GGGTAAGCCACAAGGAGGTAGATTTTGACTCAATACCTAATAATTAGAGGTGTCTAACATGGGCCTTAGATGGTGATGAGTTCTT|ATTTGTTTTCTGGTTGTTTTGTGGTCTTCTCTTTCTTTCCACCTTCCTTCCTGTCTTCCTTTCAGTGAAGGTGATTTTCCCTAGTGGTATGATTTAATTTCTTGCTTTTTATTATTTACATATCTAtTAATTTTTTTATTCAAAGTTATGAGGCTTGCAAATACTATAACACATTAAATTTAGCTGATAGCAATTTAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18130 TRIR::ENOX1 ENSG00000123144.11::ENSG00000120658.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIR ENSG00000123144.11 protein_coding - - chr19:12730640-12734684:- chr19:12734313:- chr19:12841454-12845498:- chr19:12845127:- ENOX1 ENSG00000120658.14 protein_coding - - chr13:43213130-43786972:- chr13:43361452:- chr13:43787266-44361108:- chr13:43935588:- chr19:12733961,chr19:12733967 chr13:43395906,chr13:43395909 NA NA chr19:12844775,chr19:12844781 chr13:43970042,chr13:43970045 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%) 3 4 0 1421 14 ENST00000242784.5 ENST00000690772.1 upstream downstream none AGGAGCCGCCCCCGGGTCCGCAGCGACCCGACCAGTCGGCCGCCGCCGCTGGCCCCGGGGATCCGAAGAGGAAGGGCGGTCCGGGCTCCACACTTAGCTTC|ACTCAATCTGTGTCCCAGGCTTTGATCCAAGCCTCAACATGATGACTGGAATCACCCCCATTAACCCAATGATACCAGGCCTTGGACTGGTACCTCCCCCACCACCAACAGAAGTGGCTGTTGTCAAAGAAATAATCCACTGCAAAAGCTGTACTCTTTTTCCTCAAAATCCAA___ATCTTCCACCTCCTTCCACAAGAGAACGACCTCCTGtGTGTAAGACCGTGTTTGTCGGAGG EPPPGPQRPDQSAAAAGPGDPKRKGGPGSTLSF|tqsvsqaliqast* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18133 GPRIN1::SNCB ENSG00000169258.7::ENSG00000074317.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPRIN1 ENSG00000169258.7 protein_coding - - chr5:176595802-176610156:- chr5:176609999:- chr5:176022803-176037157:- chr5:176037000:- SNCB ENSG00000074317.11 protein_coding - - chr5:176620082-176630556:- chr5:176621303:- chr5:176047083-176057557:- chr5:176048304:- chr5:176603964,chr5:176603966 chr5:176622769,chr5:176622769 NA NA chr5:176030965,chr5:176030967 chr5:176049770,chr5:176049770 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Synuclein(24%) |Synuclein(5%) 1 4 0 151 15 ENST00000303991.5 ENST00000393693.7 upstream downstream none GGCGGCGGCGGCGGCGGCGGGAGCCGGAGCGCATCTCGCCCAGGAGCCGGAGCAGCGGCACTGCCTG|CCAGAGGAAGTGGCCCAGGAAGCTGCTGAAGAACCACTGATTGAGCCCCTGATGGAGCCAGAAGGGGAGAGTTATGAGGACCCACCCCAG___GAGGAATATCAGGAGTATGAGCCAGAGGCG...___AACCAGACAGCAGCCTTGGGTGCAGGCGTGGTCATGAGGGCAGATGGACACTGCTGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18134 ENSG00000284512::CDYL2 ENSG00000284512.1::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3147 TRUE 1196 ENSG00000284512 ENSG00000284512.1 protein_coding - - chr16:81022316-81096284:- chr16:81087601:- chr16:81055921-81129889:- chr16:81121206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Glycine_cleavage_H-protein(51%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(13%)|ECH_1(29%),ECH_2(29%) 1 1 2 618 36 ENST00000640345.1 ENST00000570137.7 upstream downstream none CGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG___GAAGCGTTGGGAGATGTTGTTTATTGTAGTCTCCCTGAAGTTGGGACAAAATTGAACAAACAAG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCCTCCATCCTGCCCCTCTGTGACATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGC EWVTTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQ|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18135 ENSG00000284512::CDYL2 ENSG00000284512.1::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3147 TRUE 1196 ENSG00000284512 ENSG00000284512.1 protein_coding - - chr16:81022316-81096284:- chr16:81096131:- chr16:81055921-81129889:- chr16:81129736:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |Enoyl-CoA_hydratase/isomerase(70%) GCV_H(0%)|ECH_1(29%),ECH_2(29%) 0 2 0 215 36 ENST00000640345.1 ENST00000570137.7 upstream downstream none GGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGG...CATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGCGCTG___GCCAATGAGATGCTGT GVGAVRTLRTGPALLS|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18136 ENSG00000284512::CDYL2 ENSG00000284512.1::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3147 TRUE 1196 ENSG00000284512 ENSG00000284512.1 protein_coding - - chr16:81022316-81096284:- chr16:81090601:- chr16:81055921-81129889:- chr16:81124206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Glycine_cleavage_H-protein(28%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(9%)|ECH_1(29%),ECH_2(29%) 1 0 0 481 36 ENST00000640345.1 ENST00000570137.7 upstream downstream none CTCTGCTCTCGG___TGCGTAAATTCACAGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG|GGACTTTGTGAAGaCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCC LLSVRKFTEKHEWVTTENGIGTVGISNFAQ|glcedlypv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18137 ENSG00000260643::CDYL2 ENSG00000260643.2::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3148 TRUE 1197 ENSG00000260643 ENSG00000260643.2 protein_coding - - chr16:81053587-81096296:- chr16:81087601:- chr16:81087192-81129901:- chr16:81121206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion medium none Glycine_cleavage_H-protein(50%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(13%)|ECH_1(29%),ECH_2(29%) 1 1 2 618 36 ENST00000638948.1 ENST00000570137.7 upstream downstream none CGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG___GAAGCGTTGGGAGATGTTGTTTATTGTAGTCTCCCTGAAGTTGGGACAAAATTGAACAAACAAG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCCTCCATCCTGCCCCTCTGTGACATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18138 ENSG00000260643::CDYL2 ENSG00000260643.2::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3148 TRUE 1197 ENSG00000260643 ENSG00000260643.2 protein_coding - - chr16:81053587-81096296:- chr16:81096131:- chr16:81087192-81129901:- chr16:81129736:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion low none |Enoyl-CoA_hydratase/isomerase(70%) GCV_H(0%)|ECH_1(29%),ECH_2(29%) 0 2 0 215 36 ENST00000638948.1 ENST00000570137.7 upstream downstream none GGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGG...CATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGCGCTG___GCCAATGAGATGCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18139 ENSG00000260643::CDYL2 ENSG00000260643.2::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3148 TRUE 1197 ENSG00000260643 ENSG00000260643.2 protein_coding - - chr16:81053587-81096296:- chr16:81090601:- chr16:81087192-81129901:- chr16:81124206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion low none Glycine_cleavage_H-protein(27%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(9%)|ECH_1(29%),ECH_2(29%) 1 0 0 481 36 ENST00000638948.1 ENST00000570137.7 upstream downstream none CTCTGCTCTCGG___TGCGTAAATTCACAGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG|GGACTTTGTGAAGaCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18140 GCSH::CDYL2 ENSG00000140905.11::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3149 TRUE 1198 GCSH ENSG00000140905.11 protein_coding - - chr16:81081945-81096395:- chr16:81087601:- chr16:81115550-81130000:- chr16:81121206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Glycine_cleavage_H-protein(28%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(13%)|ECH_1(29%),ECH_2(29%) 1 1 2 618 36 ENST00000315467.9 ENST00000570137.7 upstream downstream none CGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG___GAAGCGTTGGGAGATGTTGTTTATTGTAGTCTCCCTGAAGTTGGGACAAAATTGAACAAACAAG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCCTCCATCCTGCCCCTCTGTGACATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGC EWVTTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQ|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18141 GCSH::CDYL2 ENSG00000140905.11::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3149 TRUE 1198 GCSH ENSG00000140905.11 protein_coding - - chr16:81081945-81096395:- chr16:81096131:- chr16:81115550-81130000:- chr16:81129736:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Glycine_cleavage_H-protein(0%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(0%)|ECH_1(29%),ECH_2(29%) 0 2 0 215 36 ENST00000315467.9 ENST00000570137.7 upstream downstream none GGGGTGGGCGCCGTCCGTACGCTGCGCACTGGACCCGCTCTGCTCTCGG|GGACTTTGTGAAGGCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGG...CATCGTGTGGGCCAGTGAGAAGGCCTGGTTCCAGACGCCCTACGCCACCATCCGCCTCACGCCTGCTGGCTGCTCCTCCTACACCTTCCCCCAGATCCTGGGCGTCGCGCTG___GCCAATGAGATGCTGT GVGAVRTLRTGPALLS|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18142 GCSH::CDYL2 ENSG00000140905.11::ENSG00000166446.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3149 TRUE 1198 GCSH ENSG00000140905.11 protein_coding - - chr16:81081945-81096395:- chr16:81090601:- chr16:81115550-81130000:- chr16:81124206:- CDYL2 ENSG00000166446.15 protein_coding - - chr16:80597907-80804598:- chr16:80612836:- chr16:80631804-80838495:- chr16:80646733:- chr16:81086212,chr16:81086214 chr16:80619226,chr16:80619225 NA NA chr16:81119817,chr16:81119819 chr16:80653123,chr16:80653122 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Glycine_cleavage_H-protein(15%)|Enoyl-CoA_hydratase/isomerase(70%) GCV_H(9%)|ECH_1(29%),ECH_2(29%) 1 0 0 481 36 ENST00000315467.9 ENST00000570137.7 upstream downstream none CTCTGCTCTCGG___TGCGTAAATTCACAGAGAAACACGAATGGGTAACAACAGAAAATGGCATTGGAACAGTGGGAATCAGCAATTTTGCACAG|GGACTTTGTGAAGaCCTTTATCCAGTTTAAGAAGCCTATCGTGGTGGCCATCAATGGGCCGGCCCTGGGCCTGGGTGCC LLSVRKFTEKHEWVTTENGIGTVGISNFAQ|glcedlypv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18153 UBE2QL1::SRD5A1 ENSG00000215218.4::ENSG00000145545.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBE2QL1 ENSG00000215218.4 protein_coding + + chr5:6448859-6496723:+ chr5:6449247:+ chr5:6448972-6496836:+ chr5:6449360:+ SRD5A1 ENSG00000145545.12 protein_coding + + chr5:6633427-6674386:+ chr5:6668202:+ chr5:6633540-6674499:+ chr5:6668315:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Ubiquitin-conjugating_enzyme(100%)|3-oxo-5-alpha-steroid_4-dehydrogenase_(14%) UQ_con(100%)|Steroid_dh(0%) 2 0 1 11 115 ENST00000399816.4 ENST00000274192.7 downstream upstream none GTGGACGAGAGCCTGTTCGACTGGAACGTGAAGCTGCACCAGGTGGACAAGGACTCGGTGCTGTGGCAGGACATGAAGGAGACCAACACCGAGTTCATCCTGCTCAACCTCACCTTCCCCGACAACTTCCCCTTCTCGCCGCCCTTCATGCGGGTGCTCAGCCCGCGCCTGGAGAACGGCTACGTGCTGGACGGCGGCGCCATCTGCATGGAGCTGCTCACGCCGCGCGG...CCAGCGCCTACACCGTGGAGGCCGTCATGCGCCAGTTCGCAGCCAGCCTGGTCAAGGGCCAG|GTGGTACCTCCGGAAATTTGAAGAGTATCCAAAGTTCAGAA...AATAAGTTATATCTTTGTAATTTTCCTGCTACTTTATCATTTTCAAGATGTCCTCTAGGAATTTTTTTTCTAGTAATTTTGCAATCTACCTAATAAGTACC SAYTVEAVMRQFAASLVKGQ|vvppei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18165 NOD1::SKAP2 ENSG00000106100.11::ENSG00000005020.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3155 TRUE 1199 NOD1 ENSG00000106100.11 protein_coding - - chr7:30424527-30478784:- chr7:30478606:- chr7:30464143-30518400:- chr7:30518222:- SKAP2 ENSG00000005020.13 protein_coding - - chr7:26667068-26995239:- chr7:26893973:- chr7:26706687-27034858:- chr7:26933592:- chr7:30473582 chr7:26937504 NA NA chr7:30513198 chr7:26977123 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion medium none |PH_domain(100%),SH3_domain(100%) |PH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 1 0 75 1 ENST00000222823.9 ENST00000432747.1 upstream downstream none GTCCTCCCGGGCCACGGCGCTTCCCGGCCCCGGCGTCCCCGGACCATGGCGCTCTCCGGGCTCTTCTCTAGCTCTCAGCGGCTGCGAAGTCTGTAAACCTGGTGGCCAA|GAATTTGATTATTCACTTTTCCAAGATAAAGTGGCATGGAGTGGGGAAAGACCATTAAGGAATGCTGAACATAAAGGAATCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18166 NOD1::SKAP2 ENSG00000106100.11::ENSG00000005020.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3155 TRUE 1199 NOD1 ENSG00000106100.11 protein_coding - - chr7:30424527-30478784:- chr7:30478606:- chr7:30464143-30518400:- chr7:30518222:- SKAP2 ENSG00000005020.13 protein_coding - - chr7:26667068-26995239:- chr7:26854890:- chr7:26706687-27034858:- chr7:26894509:- chr7:30473582 chr7:26937504 NA NA chr7:30513198 chr7:26977123 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |PH_domain(100%),SH3_domain(100%) |PH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 2 0 0 75 823 ENST00000222823.9 ENST00000432747.1 upstream downstream none CGCGAGGCAGCCGCCCCGGTCCTGCCCCTCCCTCGCGCTACTGCGGGAGCAGCGTCCTCCCGGGCCACGGCGCTTCCCGGCCCCGGCGTCCCCGGACCATGGCGCTCTCCGGGCTCTTCTCTAGCTCTCAGCGGCTGCGAAGTCTGTAAACCTGGTGGCCAA|ATGTTGAAACATTTGTAGCAGATATACTGAAAGGAGAAAATTTATCCAAGAAAGCAAAGGAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18177 ENSG00000243176::VEPH1 ENSG00000243176.8::ENSG00000197415.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000243176 ENSG00000243176.8 lncRNA + + chr3:157174201-157381265:+ chr3:157286341:+ chr3:156891990-157099054:+ chr3:157004130:+ VEPH1 ENSG00000197415.12 protein_coding - - chr3:157259742-157533619:- chr3:157265662:- chr3:156977531-157251408:- chr3:156983451:- chr3:157302442,chr3:157302443,chr3:157302441 chr3:157281208,chr3:157281216,chr3:157281216 NA NA chr3:157020231,chr3:157020232,chr3:157020230 chr3:156998997,chr3:156999005,chr3:156999005 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |PH_domain(100%) |PH(100%) 1 3 0 3 56 ENST00000494885.2 ENST00000362010.7 downstream downstream none GTTATTTCTCAGATAATTTCTTCCTATTTCAATGCTTCACTTTTTACAGTTTAATCATCAAGCAACAGTGTTAGGGATTACGTGAGATAATATGGTCTGTG...AAATGAATACTTTTAGGGCAAAATGGCTGATACTGCTTCCTTGATAACCACATATAG|TTGTAAATCAAGATGGCCAGCCTCTCATAGAAGGAAAACTTAAAGAGAAGCAAGTCAGATGGAAGTTCATCAAAAGGTGGAAAACACGCTATTTTACACTGGCTGGAAATCAACTTCTGTTTCAAAAAGGAAAGTCT___AAAGATGACCCTGACGACTGCCCAATAGAACTCAGCAAAGTACAGAGTGTGAAGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18185 URB1::TCP10L ENSG00000142207.7::ENSG00000242220.9 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA URB1 ENSG00000142207.7 protein_coding - - chr21:32311018-32393012:- chr21:32358533:- chr21:33683329-33765321:- chr21:33730842:- TCP10L ENSG00000242220.9 protein_coding - - chr21:32497967-32587373:- chr21:32503704:- chr21:33870277-33959683:- chr21:33876014:- NA NA NA NA NA NA NA NA sense sense unknown intron intron duplication low none Ribosome_60S_biogenesis_N-terminal(100%)| Npa1(100%)| 0 0 2 5 4 unknown unknown upstream downstream mismappers(1) CAGAGGCCTCATAATTTGAAAGAGCTGGTGTGAATTTATATCCTGCGCCCCACCTTATGCTTATATCTGCTGGCTCTGCCTAAGCTAACCAGCACCTCACCATTTTCAGGGTTGTCCTCATTGCCAAGGGCTGTAGTGAGAaACACA...|...AATTGTTTTAAGTGTTGGTTCCAACTTCAGGTGCTGGTCTTCCACTCCACTGTGGAAGGGAATAAGTGGATTTTCCCATCCTAAAGACAGTGACATTCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18186 NCKAP5::TMEFF2 ENSG00000176771.18::ENSG00000144339.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133213716:- chr2:133429361-134326034:- chr2:133971288:- TMEFF2 ENSG00000144339.12 protein_coding - - chr2:191949043-192194933:- chr2:192057775:- chr2:192813769-193059659:- chr2:192922501:- chr2:133210671 chr2:192124119 NA NA chr2:133968243 chr2:192988845 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Kazal-type_serine_protease_inhibitor_domain(50%) |Kazal_1(1%),Kazal_2(1%) 1 1 0 15 7 ENST00000409261.6 ENST00000272771.10 upstream downstream mismatches(1) CGGCGGAACACAACAAAGCGGAGGAGCGCGAGGTGCCCGGGCTGCGGTGAGCGCGTGGCCCAGGCTGCCTCCGCGCTCTGGACATGGCAAGTTTGGCAACT...AGGGAGAAGTTGGCAGTGGCCCGACTACAGCGAGAAGTTGCCCAAAGAACAAGTGAGGGGGCCATG|TCCATGAAGGCTCTGGAGAAACTAGTCAAAAGGAGACATCCACCTGTGATATTTGCCAGTTTGGTGCAGAATGTGACGAAGATGCCGAGGATGTCTG REKLAVARLQREVAQRTSEGAM|smkaleklvkrrhppvifaslvqnvtkmprms NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18189 NBEAL1::RAPH1 ENSG00000144426.19::ENSG00000173166.18 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBEAL1 ENSG00000144426.19 protein_coding + + chr2:203014608-203226378:+ chr2:203041856:+ chr2:203879331-204091101:+ chr2:203906579:+ RAPH1 ENSG00000173166.18 protein_coding - + chr2:203394345-203535335:- chr2:203504757:+ chr2:204259068-204400058:- chr2:204369480:+ chr2:203043709,chr2:203043710 chr2:203498432,chr2:203498430 NA NA chr2:203908432,chr2:203908433 chr2:204363155,chr2:204363153 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' low none none none 0 2 0 47 14 ENST00000683969.1 unknown downstream upstream none CCTGAAGCTGTGGTTGGACACTTTTGTTTCTAGCTATGAACAATTTTTAGACGTTGACTTTGAAAAGCTGCCTACCAG|AATGCTTTTAATAGCACCCAAGTCACCTTTTGAATGGTTTGCTGCTTTGAAATTTCTTCCATCAGATACCCTAAATCATCTCTCTCAATTTCAAAGTTCTACAAATCTCTAGCGCAG LKLWLDTFVSSYEQFLDVDFEKLPTr|mlliapkspfewfaalkflpsdtlnhlsqfqsstnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18193 TMEM245::EPB41L4B ENSG00000106771.13::ENSG00000095203.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMEM245 ENSG00000106771.13 protein_coding - - chr9:109015135-109119947:- chr9:109060354:- chr9:111777415-111882227:- chr9:111822634:- EPB41L4B ENSG00000095203.15 protein_coding - - chr9:109171974-109321059:- chr9:109279921:- chr9:111934254-112083339:- chr9:112042201:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(77%),FERM_adjacent_(FA)(100%),FERM_central_domain(100%) |FA(100%),FERM_C(100%),FERM_M(100%),FERM_N(22%) 1 1 0 683 64 ENST00000374586.8 ENST00000374566.8 upstream downstream none CGAGAATGGATAACTCACAAG___CTCCATAAAATTCTAGGAGATAAGGTGAACAATACTGCTGTAATTGAAAAGCAAGTACTAGAACTTTGGGACAGACTGTATCACTCTTGGTTTGTAAAG|AAACATGCCAAAGGCCAGGATTTGTTTGATCAGATTGTGTACCACTTGGACCTTGTGGAAACAGATTACTTTGG...GGATCATGCCAAACCCATAAAcAAGCAGATGAAAA___TTGGACCTGCTTATGCTTTACACTTTCGAGTTAAATACTATTCTTCAGAACCAAACAACCTTCGTG REWITHKLHKILGDKVNNTAVIEKQVLELWDRLYHSWFVK|KHAKGQDLFDQIVYHLDLVETDYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18208 RPIA::PTCSC2 ENSG00000153574.9::ENSG00000236130.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPIA ENSG00000153574.9 protein_coding + + chr2:88691673-88750929:+ chr2:88738076:+ chr2:88991191-89050446:+ chr2:89037593:+ PTCSC2 ENSG00000236130.2 lncRNA - - chr9:97699625-97853080:- chr9:97810039:- chr9:100461907-100615362:- chr9:100572321:- chr2:88744815 chr9:97834988 NA NA chr2:89044332 chr9:100597270 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Ribose_5-phosphate_isomerase_A_(phosphoriboisomerase_A)(87%)| Rib_5-P_isom_A(76%)| 0 1 0 1166 3 ENST00000283646.5 ENST00000649461.1 downstream downstream none TGAAGTGAATACAGCTATCAAAATGATCCCAG|ATGGTGGAAAGCTGCACTTGAAGTCCAACTCTGTCCTGGGGGAATAATTATGTTCCCTGTCTTGGGAG EVNTAIKMIP|dggklhlksnsvlge* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18236 ERGIC2::CHRNA6 ENSG00000087502.19::ENSG00000147434.9 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1720 FALSE NA FALSE NA ERGIC2 ENSG00000087502.19 protein_coding - - chr12:29337352-29381189:- chr12:29366877:- chr12:29490285-29534122:- chr12:29519810:- CHRNA6 ENSG00000147434.9 protein_coding - - chr8:42752620-42796392:- chr8:42765204:- chr8:42607763-42651535:- chr8:42620347:- chr12:29363616,chr12:29363620 chr8:42766270,chr8:42766271 NA NA chr12:29516549,chr12:29516553 chr8:42621413,chr8:42621414 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Endoplasmic_Reticulum-Golgi_Intermediate_Compartment_(ERGIC)(100%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) ERGIC_N(100%)|Neur_chan_LBD(100%),Neur_chan_memb(100%) 12 49 23 371 65 ENST00000360150.9 ENST00000276410.7 upstream downstream duplicates(19),mismatches(5) TAGCATTTACAACTATGGCTTTATTAACCATAATGGAATTCTaAGTATATCAAGATACATGGATGAAGTATGAATACGAAGTAGACAAGGATTTTTCTAG___CAAATTAAGAATTAATATAGATATTACTGTTGCCATGAAGTGTCAAT___ATGTTGGAGCGGATGTATTGGATTTAGCAGAAACAATGGTTGCATCTGCAGATGGTTTAGTTTATGAACCA|GCTGTGTGGGCTGTGCAACTGAGGAGAGGCTCTTCCACAAACTGTTTTCTCATTACAACCAGTTCATCAGGCCTGTGGAAAACGTTTCCGACCCTGTCACGGTACACTTTGAAGTGGCCATCACCCAGCTGGCCAACGTG___GATGAAGTAAACCAGATCATGGAAACCAATTTGTGGCTGCGTCAC___ATCTGGAATGATTATAAATTGCGCTGGGATCCAATGGAATATGATGG AFTTMALLTIMEF*VYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCQYVGADVLDLAETMVASADGLVYEP|avwavqlrrgsstncflittsssglwktfptlsrytlkwpspswptwmk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18251 LPCAT1::LMBRD2 ENSG00000153395.10::ENSG00000164187.7 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LPCAT1 ENSG00000153395.10 protein_coding - - chr5:1456480-1523962:- chr5:1494700:- chr5:1456595-1524077:- chr5:1494815:- LMBRD2 ENSG00000164187.7 protein_coding - + chr5:36098407-36151887:- chr5:36149525:+ chr5:36098509-36151989:- chr5:36149627:+ chr5:1489819,chr5:1489823 chr5:36143925,chr5:36143921 NA NA chr5:1489934,chr5:1489938 chr5:36144027,chr5:36144023 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Acyltransferase(45%)| Acyltransferase(1%)| 6 1 10 563 39 ENST00000475622.5 unknown upstream upstream duplicates(5),mismatches(2) CCTGGCCCCTCGCACTTGTCGCATCCCTGGGCTCTGCGGAGAAGGAACCCGAGCAGCCCCCGGCCCTGTGGAGGAA___GGTTGTGGACTTCCTGCTGAAGGCCATCATGCGCACCATGTGGTTCGCCGGCGGCTTCCACCGGGTGGCCGTGAAGGGGCGGCAGGCGCTGCCCACCGAGGCGGCCATCCTCACGCTCGCGCCTCACTCGTCCTACTTCGACGCCATCCCTGTGACCATGACGATGTCCTCCATCGTGATGAAGGCAGAGAGCAGAGACATCCCGATCTGGGGAA|GACAGATGCTGGAACTCCAGGAATCCTATCATCATCTAGACAGCAGGATGGAGAAACAAAGAAGGGTGGACCGTCTTCCTTTTAAAGAGAT___ATAAAGGAAGGATCCCGTCCACAGACCCAATTCTTAGGGCCGCC WPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGRQALPTEAAILTLAPHSSYFDAIPVTMTMSSIVMKAESRDIPIWG|rqmlelqesyhhldsrmekqrrvdrlpfkei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6075 chr5:1510762-1510856:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18252 RAB2A::LINC01301 ENSG00000104388.15::ENSG00000251396.9 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB2A ENSG00000104388.15 protein_coding + + chr8:60516936-60623644:+ chr8:60618648:+ chr8:61429495-61536203:+ chr8:61531207:+ LINC01301 ENSG00000251396.9 lncRNA - + chr8:60289928-60516815:- chr8:60489278:+ chr8:61202487-61429374:- chr8:61401837:+ chr8:60619748,chr8:60619711,chr8:60619745 chr8:60471960,chr8:60471956,chr8:60471954 NA NA chr8:61532307,chr8:61532270,chr8:61532304 chr8:61384519,chr8:61384515,chr8:61384513 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ras_family(100%)| Arf(100%),MMR_HSR1(100%),Ras(100%),Roc(100%)| 5 4 7 796 22 ENST00000262646.12 unknown downstream upstream duplicates(4),mismatches(1) CGCCAGCATTCCAATTCCAACATGGTCATTATGCTTATTGGAAATAAAAG___TGATTTAGAATCTAGAAGAGAAGTAAAAAAAGAAGAAGGTGAAGCTTTTGCACGAGAACATGGACTCATCTTCATGGAAACGTCTGCTAAGACTGCTTCCAATGTAGAAGAG___GCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATTCAAGAAGGAGTCTTTGACATTAATAATGAG|GGAGAGTGAGACAAGACACCCATGCAATCAAGAGCTCAAGATATGGTACTCCATGAGAGATACAGTCATCGAACAGCACTGGGAGCAAGTTCCAATTATGCTCCAAAGCCTGGATGACTCATCTGTCTCTGAAAGAAGCTTTCCATGATCCCAGCCCACCCTTTTGTTCAGTTTTCTCCTTGGTAGTCACCCATATATACTCTGAGATCAAGCCAAGGGTTCACTCCTTATTCCCAACCACAGCCTGAGCTCTCCTGCTCCATGCCTCCTTCACTCTGTTCCTCTGCCAGCCTGGAATGTTCTCC RQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNE|ge* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18256 BID::MICAL3 ENSG00000015475.19::ENSG00000243156.9 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BID ENSG00000015475.19 protein_coding - - chr22:17734138-17774770:- chr22:17774381:- chr22:18216904-18257536:- chr22:18257147:- MICAL3 ENSG00000243156.9 protein_coding - - chr22:17787649-18024561:- chr22:17791301:- chr22:18270415-18507327:- chr22:18274067:- chr22:17758392,chr22:17758398 chr22:17793095,chr22:17793098 NA NA chr22:18241158,chr22:18241164 chr22:18275861,chr22:18275864 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Bivalent_Mical/EHBP_Rab_binding_domain(77%) |DUF3585(2%) 2 11 1 425 118 ENST00000614949.4 ENST00000441493.7 upstream downstream duplicates(3) GCCGAAGGAGGAAGCGCGCGGGGCGCCATAAGGAGGAAGCGGGTAGTCGACCGTGTCCGCGCGCCTGGGAGACGCTGCCTCGGCCCGGACGCGCCCGCGCCCCCGCGGCTGGAGGGTG|GCATGGGCAAGAAGGACGACCCCAAGCTGATGCAGGAGTGGTTCAAGCTAGTGCAGGAGAAGAACGCCATGGTGCGCTACGAGTCGGAGCTGATGATCTT___TGCCCGGGAGCTGGAGCTGGAAGACCGGCAGAGTCGACTGCAGCAGGAGCTCCGGGAACGCATGGCAGTGGAAG___ATCACCTTAAGACTGAGGAGGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18257 BID::ENSG00000093100 ENSG00000015475.19::ENSG00000093100.13 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1725 FALSE NA FALSE NA BID ENSG00000015475.19 protein_coding - - chr22:17734138-17774770:- chr22:17774381:- chr22:18216904-18257536:- chr22:18257147:- ENSG00000093100 ENSG00000093100.13 lncRNA - - chr22:17787652-17811497:- chr22:17791301:- chr22:18270418-18294263:- chr22:18274067:- chr22:17758392,chr22:17758398 chr22:17793095,chr22:17793098 NA NA chr22:18241158,chr22:18241164 chr22:18275861,chr22:18275864 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 2 10 1 425 118 ENST00000614949.4 ENST00000476405.1 upstream downstream duplicates(3) GCCGAAGGAGGAAGCGCGCGGGGCGCCATAAGGAGGAAGCGGGTAGTCGACCGTGTCCGCGCGCCTGGGAGACGCTGCCTCGGCCCGGACGCGCCCGCGCCCCCGCGGCTGGAGGGTG|GCATGGGCAAGAAGGACGACCCCAAGCTGATGCAGGAGTGGTTCAAGCTAGTGCAGGAGAAGAACGCCATGGTGCGCTACGAGTCGGAGCTGATGATCTT___TGCCCGGGAGCTGGAGCTGGAAGACCGGCAGAGTCGACTGCAGCAGGAGCTCCGGGAACGCATGGCAGTGGAAG___ATCACCTTAAGACTGAGGAGGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18259 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1726 FALSE NA FALSE NA THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71256715:+ chr15:71389291-72075722:+ chr15:71549054:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:71049409:+ chr15:71145578-71345997:+ chr15:71341748:+ chr15:71264483,chr15:71264484 chr15:71039556,chr15:71039554 NA NA chr15:71556822,chr15:71556823 chr15:71331895,chr15:71331893 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Thrombospondin_type_1_domain(6%)| ADAM_CR_3(0%),TSP_1(0%)| 4 4 2 57 27 ENST00000355327.7 ENST00000544974.6 downstream upstream mismappers(1) CCGGAGACAGAAGCTCTCATCCCGCCATTCCAGGTCCCAGGGAGCATCTTCTGCTAGGCATGGCTACAGTTCACCAGCCCACCAGGTCCCCCAACATGGGC...CGGAGGCCCCCATCTACCAGCTACCTTTGACCCATGATCAAGGCTACCCTGCAGCTTCAAGTCTCTTTCACAGCCCAGAAACAAGCAACAACCACGGTGTGGGGACCCATGGGGCAACTCAGAGCTTCTCTCAGCCTGCCCGATCTACAGCAATCTCATGCATCGGGGCCTATCGGCAGTACAAGCTGTGCAACACCAAC___GTATGTCCAGAAAGCAGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCATGGGCCGGTTTTATGAGTGGGAACCATTTGCAGAAG|GAAATAAAGGAAAAGAAGAAATTCTGTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATGAAAAATGAGGCTTTGCAGAAGCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATTCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAAAAA EAPIYQLPLTHDQGYPAASSLFHSPETSNNHGVGTHGATQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIREVQCASYNNKPFMGRFYEWEPFAE|gnkgkeeil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 TRUE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|TRUE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18266 ADAMTSL1::BNC2 ENSG00000178031.18::ENSG00000173068.19 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3168 TRUE 1200 ADAMTSL1 ENSG00000178031.18 protein_coding + + chr9:17906563-18910950:+ chr9:18721665:+ chr9:17906561-18910948:+ chr9:18721663:+ BNC2 ENSG00000173068.19 protein_coding - - chr9:16409503-16870843:- chr9:16738485:- chr9:16409501-16870841:- chr9:16738483:- NA NA NA NA NA NA NA NA sense sense stop-codon CDS/splice-site CDS/splice-site inversion high none Thrombospondin_type_1_domain(48%)|Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%) ADAM_CR_3(100%),ADAM_spacer1(100%),TSP1_ADAMTS(29%),TSP_1(87%)|zf-C2H2(100%),zf-met(100%) 2 0 4 8 0 ENST00000680146.1 ENST00000380672.9 downstream downstream duplicates(1) GAGGGGTTCACCAAGTGCTCCGAGTCCTGTGGAGGAG___...CT?TGCACTCTGGCCTGACCGTGTGATTTGTACACAGGTGTCCAGGAGGCTGTGGTGAGCTGCTTGAACAAACAGACTCGGGAGCCTGCTGAGGAGAACCTGTGCGTGACCAGCCGCCGGCCCCCACAGCTCCTGAAGTCCTGCAATTTGGATCCCTGCCCAGCAAG|GCACACCTTGGGCCCACCCCACCTCCACATAGCCTTAATTACAAATCAGAG...TGAGCAAGACTGGCCAGCATATTTCAAGGTCCCATGTTGTGGGGTTGATACATCTCAAATTGAG___TCAGAAGAGGCAGAAGTGGATGTGAGAGAAAGAGAGACACAGAGAGACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3152 chr9:18573306-18573379:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18267 ADAMTSL1::BNC2 ENSG00000178031.18::ENSG00000173068.19 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3168 TRUE 1200 ADAMTSL1 ENSG00000178031.18 protein_coding + + chr9:17906563-18910950:+ chr9:18721665:+ chr9:17906561-18910948:+ chr9:18721663:+ BNC2 ENSG00000173068.19 protein_coding - - chr9:16409503-16870843:- chr9:16583085:- chr9:16409501-16870841:- chr9:16583083:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Thrombospondin_type_1_domain(48%)|Zinc-finger_of_C2H2_type(100%),Zinc_finger__C2H2_type(100%) ADAM_CR_3(100%),ADAM_spacer1(100%),TSP1_ADAMTS(29%),TSP_1(87%)|zf-C2H2(100%),zf-met(100%) 0 1 0 8 6 ENST00000680146.1 ENST00000468187.6 downstream downstream none CACAGCTCCTGAAGTCCTGCAATTTGGATCCCTGCCCAGCAAG|GCCATCCGTTGCACACTGGTAAACTGCACATGTGAATGTTTTCAGCCAGGGAAGATTA...TCTCCAATGACTTCTGCTCAGAGGTGAAACACAGCATTCTTTCCGGCTGCCTTATACTGTGCAGTGTCCTGGGTGTGGGGCAATGAGGAAGTGACTTGGGT QLLKSCNLDPCPAr|psvahw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3152 chr9:18573306-18573379:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18276 TMEM120B::LSAMP ENSG00000188735.13::ENSG00000185565.13 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121761738:+ chr12:122150658-122220907:+ chr12:122199644:+ LSAMP ENSG00000185565.13 protein_coding - + chr3:115802374-117139389:- chr3:115837459:+ chr3:115521221-116858236:- chr3:115556306:+ chr12:121762930,chr12:121762929 chr3:115834861,chr3:115834857 NA NA chr12:122200836,chr12:122200835 chr3:115553708,chr3:115553704 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none TMPIT-like_protein(54%)| TMPIT(77%)| 1 0 2 46 0 ENST00000449592.7 unknown downstream upstream duplicates(1),mismatches(1) CGGCAATGTGAACGTGACCCTCCTCAGCAACCAGGCCAA___GTTCGCCTACAAGGACGAATATGAGAAGTTCAAGCTCTACCTGACCATCATCCTGCTCCTGG...GTCGATTTGTCCTTCACTACAG___GGTGACTGACGAAGTCTTCAACTTCCTGCTGGTGTGGTATTACTGCACCCTGACCATTCGGGAGAGCATTCTCATCAGCAACGGCTCAAG|a|CcAAACGCTGACTACTAGGCTGGAATATTCACTGAGAACATCAACATGCCAAAGAGAAGCCA RFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSr|pnady* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18295 RRP7A::ARFGAP3 ENSG00000189306.11::ENSG00000242247.11 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRP7A ENSG00000189306.11 protein_coding - - chr22:42508344-42519796:- chr22:42512907:- chr22:42904350-42915802:- chr22:42908913:- ARFGAP3 ENSG00000242247.11 protein_coding - - chr22:42796502-42858106:- chr22:42841447:- chr22:43192508-43254112:- chr22:43237453:- chr22:42512608,chr22:42512614 chr22:42845533,chr22:42845536 NA NA chr22:42908614,chr22:42908620 chr22:43241539,chr22:43241542 NA NA sense sense stop-codon 3'UTR intron duplication medium none Ribosomal_RNA-processing_protein_7_(RRP7)_C-terminal_domain(100%),Rrp7_RRM-like_N-terminal_domain(100%)|Putative_GTPase_activating_protein_for_Arf(50%) RRM_1(100%),RRM_Rrp7(100%),RRP7(100%)|ArfGap(38%) 1 1 3 827 34 ENST00000323013.7 unknown upstream downstream duplicates(1) CCGGCGGCCTGTGCTCCCCCGGACTGAGGCAGCCAGCTTGCGGGTGCTGGAGAGGGAGAGACGGAAGCGCAGCCGAAAAGAGCTGCTCAACTTCTACGCCTGGCAGCATCGAGAGAGCAAGATGGAGC___ATCTAGCGCAGCTGCGCAAGAAGTTCGAGGAGGACAAGCAGAGGATCGAGCTGCTGCGGGCCCAGCGCAAATTCCGACCGTACTGAGCT|GTCTCTTCTACCTTGTGATAAGAGAATGAGCATCCTCCAAGCTTCTGGTAG...CAAACAGTGCATCTGTTTCAAGTAGAGACACATTACCAAATTTCAAATCATATCCAACCAAGGATGGGAGGCAAAGAGTTGGTGTCGTTCCAGCAGCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18298 RRP7A::PACSIN2 ENSG00000189306.11::ENSG00000100266.19 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRP7A ENSG00000189306.11 protein_coding - - chr22:42508344-42519796:- chr22:42512907:- chr22:42904350-42915802:- chr22:42908913:- PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42841447:- chr22:43231418-43411155:- chr22:43237453:- chr22:42512608,chr22:42512614 chr22:42845533,chr22:42845536 NA NA chr22:42908614,chr22:42908620 chr22:43241539,chr22:43241542 NA NA sense sense stop-codon 3'UTR intron duplication medium none Ribosomal_RNA-processing_protein_7_(RRP7)_C-terminal_domain(100%),Rrp7_RRM-like_N-terminal_domain(100%)| RRM_1(100%),RRM_Rrp7(100%),RRP7(100%)|ArfGap(38%) 1 1 2 827 34 ENST00000323013.7 unknown upstream downstream duplicates(1) CCGGCGGCCTGTGCTCCCCCGGACTGAGGCAGCCAGCTTGCGGGTGCTGGAGAGGGAGAGACGGAAGCGCAGCCGAAAAGAGCTGCTCAACTTCTACGCCT...GCAAGATGGAGC___ATCTAGCGCAGCTGCGCAAGAAGTTCGAGGAGGACAAGCAGAGGATCGAGCTGCTGCGGGCCCAGCGCAAATTCCGACCGTACTGAGCT|GTCTCTTCTACCTTGTGATAAGAGAATGAGCATCCTCCAAGCTTCTGGTAG...CAAACAGTGCATCTGTTTCAAGTAGAGACACATTACCAAATTTCAAATCATATCCAACCAAGGATGGGAGGCAAAGAGTTGGTGTCGTTCCAGCAGCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Adrenocortical carcinoma ADRENAL_GLAND no_match 42914011|42915720 FALSE|FALSE 43275175|43275175 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18309 NOL4L::BPIFB4 ENSG00000197183.15::ENSG00000186191.9 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NOL4L ENSG00000197183.15 protein_coding - - chr20:32443059-32585333:- chr20:32511347:- chr20:31030862-31173135:- chr20:31099150:- BPIFB4 ENSG00000186191.9 protein_coding + + chr20:33079643-33111751:+ chr20:33092458:+ chr20:31667449-31699557:+ chr20:31680264:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |LBP_/_BPI_/_CETP_family__C-terminal_domain(100%) |LBP_BPI_CETP_C(100%) 0 2 0 4 5 ENST00000621426.7 ENST00000375483.4 upstream upstream duplicates(1) CTGGTCTCTGGGATTATTGATTACAACATGCCCCTCACCTCCACCTACCTGAAGCAGATGAAGCTTCGAGTGATGAATTCCCAGGAGCAG|ACGCTGGTTGGGGAGGCTGGAGGAGGACTCATCGACTACCCATTGGGGTGGCCAGCTGTGTCT...GCCGATGCCAGAGCTGCCTCCCATGGGTGACAACACCAAGTCCCAGCTGGCCATGTCTGCCAACTTCCTGGGCTCAGTGCTGACTCTACTGCAGAAGCAGCATGCTCTAGACCTGGATATCAC LVSGIIDYNMPLTSTYLKQMKLRVMNSQEQ|TLVGEAGGGLIDYPLGWPAV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18337 LMO7::MPRIP ENSG00000136153.20::ENSG00000133030.22 NCIH1436 SRR8615946 SRR8652142 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1728 TRUE 3177 TRUE 1201 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75761038:+ chr13:76194570-76434006:+ chr13:76335174:+ MPRIP ENSG00000133030.22 protein_coding + + chr17:17042457-17217679:+ chr17:17201458:+ chr17:16945771-17120993:+ chr17:17104772:+ chr13:75775198 chr17:17199571 NA NA chr13:76349334 chr17:17102885 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Calponin_homology_(CH)_domain(100%)| CH(100%)|PLDc_2(100%) 8 8 10 190 63 ENST00000341547.8 ENST00000578209.5 downstream upstream duplicates(5),mismatches(1) TGCTGTGTGA...___TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAA|TGTACGACACCTGTTCTACCTGGGAATGCAAACCCTGAGCTGCAAATAAGAACACAGACGTGGGAGACACCACGGCCTGAAGCTGCTCTCCTCTTCCCCGCTCTCCTCTCCTCCGGTCCCGTGATGGGTTACGCTGAGCCAGCAATGTGCACGCACTAACTCCACAGGTGTTAAAG___ACACTTTCcGCTGAACCATTTGAAAGCAAG LINKLKPGVIKKINRLSTPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVn|vrhlfylgmqtlsck* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18338 LMO7::MPRIP ENSG00000136153.20::ENSG00000133030.22 NCIH1436 SRR8615946 SRR8652142 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3177 TRUE 1201 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75761038:+ chr13:76194570-76434006:+ chr13:76335174:+ MPRIP ENSG00000133030.22 protein_coding + + chr17:17042457-17217679:+ chr17:17217490:+ chr17:16945771-17120993:+ chr17:17120804:+ chr13:75775198 chr17:17199571 NA NA chr13:76349334 chr17:17102885 NA NA sense sense unknown CDS/splice-site 3'UTR/splice-site translocation high none Calponin_homology_(CH)_domain(100%)| CH(100%)| 1 0 4 190 20 ENST00000533305.5 ENST00000578209.5 downstream upstream duplicates(1),mismatches(1) CGGGAGAGCGGGTAGCGGGCTCAGCTGGCCGGGGCTCAG___GCAGTAACAGAGAAGAATTTTGAAACAAAAGATTTTCGAGCCTCTCTAGAAAATGGTGTTCT...AATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAA|ACACTTTCcGCTGAACCATTTGAAAGCAAGCTGTAGGGCCCTCGACATGGCAGCACCCAGGAGAATAAGGGCATCTCCACAGCTGAGACCATGACTGCAGCCAGGAGTGCCTGGACGGACGCATCTGACATCCAGCCGTGTGCACAAGCC...GCgTGACGGCTcCTGTTCTTTGGATCCAtcAGATACTACAGGACCCATCATGGCTTTTAGTTGTCACGTCCTTATTCTTTAACCcAGAACAGCCcCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18341 ENSG00000261553::MPRIP ENSG00000261553.5::ENSG00000133030.22 NCIH1436 SRR8615946 SRR8652142 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3178 TRUE 1202 ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75761038:+ chr13:76123909-76381256:+ chr13:76335174:+ MPRIP ENSG00000133030.22 protein_coding + + chr17:17042457-17217679:+ chr17:17201458:+ chr17:16945771-17120993:+ chr17:17104772:+ chr13:75775198 chr17:17199571 NA NA chr13:76349334 chr17:17102885 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none none |PLDc_2(100%) 5 8 5 190 63 ENST00000563635.5 ENST00000578209.5 downstream upstream duplicates(5),mismatches(1) CGCTGAGGCTCAGAGATGGGTGGAG___TTTGATTAATAAGCTTAAACCTGGCGTCATTAAGAAGATCAATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAA|TGTACGACACCTGTTCTACCTGGGAATGCAAACCCTGAGCTGCAAATAAGAACACAGACGTGGGAGACACCACGGCCTGAAGCTGCTCTCCTCTTCCCCGCTCTCCTCTCCTCCGGTCCCGTGATGGGTTACGCTGAGCCAGCAATGTGCACGCACTAACTCCACAGGTGTTAAAG___ACACTTTCcGCTGAACCATTTGAAAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18342 ENSG00000261553::MPRIP ENSG00000261553.5::ENSG00000133030.22 NCIH1436 SRR8615946 SRR8652142 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3178 TRUE 1202 ENSG00000261553 ENSG00000261553.5 lncRNA + + chr13:75549773-75807120:+ chr13:75761038:+ chr13:76123909-76381256:+ chr13:76335174:+ MPRIP ENSG00000133030.22 protein_coding + + chr17:17042457-17217679:+ chr17:17217490:+ chr17:16945771-17120993:+ chr17:17120804:+ chr13:75775198 chr17:17199571 NA NA chr13:76349334 chr17:17102885 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site translocation high none none none 1 0 2 190 20 ENST00000563635.5 ENST00000578209.5 downstream upstream duplicates(1),mismatches(1) CGGGAGAGCGGGTAGCGGGCTCAGCTGGCCGGGGCTCAG___GCAGTAACAGAGAAGAATTTTGAAACAAAAGATTTTCGAGCCTCTCTAGAAAATGGTGTTCT...AATAGACTGTCTACACCAATAGCAGGATTG___GATAATATAAACGTTTTCTTGAAAGCTTGTGAACAGATTGGATTGAAAGAAGCCCAGCTTTTCCATCCTGGAGATCTACAGGATTTATCAAATCGAGTCACTGTCAA|ACACTTTCcGCTGAACCATTTGAAAGCAAGCTGTAGGGCCCTCGACATGGCAGCACCCAGGAGAATAAGGGCATCTCCACAGCTGAGACCATGACTGCAGCCAGGAGTGCCTGGACGGACGCATCTGACATCCAGCCGTG...GCgTGACGGCTcCTGTTCTTTGGATCCAtcAGATACTACAGGACCCATCATGGCTTTTAGTTGTCACGTCCTTATTCTTTAACCcAGAACAGCCcCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18389 DEDD::UFC1 ENSG00000158796.17::ENSG00000143222.12 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE TRUE 1731 FALSE NA FALSE NA DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130815:- chr1:161090764-161102478:- chr1:161100605:- UFC1 ENSG00000143222.12 protein_coding + + chr1:161152776-161158856:+ chr1:161156950:+ chr1:161122566-161128646:+ chr1:161126740:+ chr1:161130462,chr1:161130465 chr1:161155095,chr1:161155092 NA NA chr1:161100252,chr1:161100255 chr1:161124885,chr1:161124882 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Ubiquitin-fold_modifier-conjugating_enzyme_1(77%) |UFC1(34%) 24 61 29 524 4172 ENST00000368006.8 ENST00000368003.6 upstream upstream duplicates(7),mismatches(9) GCCCGGATGCGGCGCCGTGAGGCAGGCCCGGGAGAGCGGCGCGGATGGATCCAACATGGCGGCGCCGAGCCTGAGCCGAGA___GAAGAGACCTGGGAAATTAAGTTTCTTGCGGAG|TATGTGGAGAACAACAAGAATGCTGACAACGATTGGTTCCGACTGGAGTCCAACAAGGAAGGAACTCG___GTGGTTTGGAAAATGCTGGTATATCCATGACCTCCTGAAATATGAGTTTGACATCGAGTTTGAC___ATTCCTATCACATATCCTACTACTGCCCCAGAAATTGCAGTTCCTGAGCTGGATGGAAAGACAGCAAAGATGTACAG___GGGTGGCAAAATATGCCTGACGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18390 ZNF875::SPIDR ENSG00000181666.19::ENSG00000164808.17 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE TRUE 1732 FALSE NA FALSE NA ZNF875 ENSG00000181666.19 protein_coding + + chr19:37312837-37369365:+ chr19:37347872:+ chr19:37803739-37860267:+ chr19:37838774:+ SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47735307:+ chr8:48173470-48648868:+ chr8:48647869:+ chr19:37351211,chr19:37351211 chr8:47729634,chr8:47729631 NA NA chr19:37842113,chr19:37842113 chr8:48642196,chr8:48642193 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none KRAB_box(100%)|Domain_of_unknown_function_(DUF4503)(9%) KRAB(100%)|DUF4503(0%) 20 46 20 196 349 ENST00000392153.8 ENST00000518074.5 downstream upstream duplicates(5),mismatches(2) GCCCTTCTCCAGGAAGAGCACTCAGGAGACCAGGAAAATGGCCAC...GGGCTCCTGAGAGCCAAAAAAGAG___GCGTTCGTGGCATTCAGG?ATGTGGCTGTGTACTTCACCCAGGAGGAGTGGAGGTTGTTGAGCCCTGCTCAGAGGACCCTGCACAGGGAGGTGATGCTGGAGACTTATAACCATCTGGTCTCACTGG___AAATTCCATCTTCTAAACCAAAACTCATTGCTCAGCTGGAGCGAGGGGAAGCGCCCTGGAGAGAGGAGAGAAAATGTCCACTGGACCTCTGTCCAG|AGCTACGAAGTGAAGAGTGTCCTCGGAAAGGAAGTGGGGTTGTTAAATTGTTTTGTCCAGTCCGTAACCGCCCACCCGACCAGCTGCATTGGATTGGAGGAAATCGAGCTTCTGAGTGCAGGAGGGGCCTCTGCAGAACACTAGCGGTTGCCGCAGGATCTGTGAACTTTGCAATGTGGCTGCAAGGGTGGTGGTGGTGGTGGTGATTTGGG GLLRAKKEAFVAFR?VAVYFTQEEWRLLSPAQRTLHREVMLETYNHLVSLEIPSSKPKLIAQLERGEAPWREERKCPLDLCP|eLRSEECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWWWWW* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18391 EPN1::CYYR1-AS1 ENSG00000063245.15::ENSG00000197934.8 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3183 TRUE 1203 EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ CYYR1-AS1 ENSG00000197934.8 lncRNA + + chr21:26393635-26569252:+ chr21:26503582:+ chr21:27765954-27941571:+ chr21:27875901:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none ENTH_domain(48%)| ANTH(2%),ENTH(2%)| 31 13 14 2746 55 ENST00000270460.11 ENST00000357401.3 downstream upstream duplicates(7),mismatches(1) TGTCGACCTCGTCCTTGAGGCGCCAGATGAAGAACATCGTCCACAACTACTCAGAGGCGGAGATCAAGGTTCGAGAGGCCACGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCAGAGATTGCCGACCTCACCTACAACGTTGTCGCCTTCTCGGAGATCATGAGCATGATCTGGAAGCGGCTCAATGACCATGGCAAGAACTGGCGTCACGTTTACAAG|AGTATCTGCCTGGAAACCCTGTTGCCTGGAGACCACTCTTGAAGAACATCCACTGCTGTGGCCTCTTAAAGATTTAAGACATCTAATGAACAGCTGACAGAAATCATCAATTTGCTCCTCA___GGACATGGATCGACCTGGAAGCCATTATCCTCAGCAAACTGATGCAGGAACAGAAAACCAAACtCTGCGCGT STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYK|sicletllpgdhs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18392 EPN1::CYYR1-AS1 ENSG00000063245.15::ENSG00000197934.8 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3183 TRUE 1203 EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ CYYR1-AS1 ENSG00000197934.8 lncRNA + + chr21:26393635-26569252:+ chr21:26550319:+ chr21:27765954-27941571:+ chr21:27922638:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none ENTH_domain(48%)| ANTH(2%),ENTH(2%)| 1 0 0 2746 7 ENST00000270460.11 ENST00000357401.3 downstream upstream duplicates(1) GTCCACAACTACTCAGAGGCGGAGATCAAGGTTCGAGAGGCCACGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCAGAGATTGCCGACCTCAC...TCACGTTTACAAG|GCCTCCCTCCTCCCTGAAACACAAAAACATTGAAATTAGGCCAATTAATAACTCTACAATGGCCTCTAAGAGTTAAAATGAAAGGAAG HVYK|asllpetqkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18393 EPN1::ENSG00000232692 ENSG00000063245.15::ENSG00000232692.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3184 TRUE 1204 EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ ENSG00000232692 ENSG00000232692.1 lncRNA + + chr21:26378552-26471698:+ chr21:26470751:+ chr21:27750871-27844017:+ chr21:27843070:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none ENTH_domain(48%)| ANTH(2%),ENTH(2%)| 27 9 21 2746 51 ENST00000270460.11 ENST00000429340.1 downstream upstream duplicates(11),mismatches(3) AGTCGCCCCATCTCTCCACGCATCGGGGCCCTGTGCCCCTTGCTGCTGCAGCCGGGCACCATGTCGACCTCGTCCTTGAGGCGCCAGATGAAGAACATCGTCCACAACTACTCAGAGGCGGAGATCAAGGTTCGAGAGGCCACGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCAGAGATTGCCGACCTCACCTACAACGTTGTCGCCTTCTCGGAGATCATGAGCATGATCTGGAAGCGGCTCAATGACCATGGCAAGAACTGGCGTCACGTTTACAAG|TTTGCCTATCTTTACCAAGAGCTTGATGATTTGAACCACTGACTGATTGCCCTGTACTTGGAGGATGTGAGGAAGCAGAATTGAGCCAATAAAGAGAAGAGGAAGAAGGAGCCACAGAACTGAGTGGGATGTCCCCTGAGCACTCCTTGGTGGAGCAAAAGTCTTGCAAGTCTCTAGTGCGCTGGGCAGGCTGA MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYK|faylyqelddlnh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18394 EPN1::ENSG00000232692 ENSG00000063245.15::ENSG00000232692.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3184 TRUE 1204 EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ ENSG00000232692 ENSG00000232692.1 lncRNA + + chr21:26378552-26471698:+ chr21:26417943:+ chr21:27750871-27844017:+ chr21:27790262:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none ENTH_domain(48%)| ANTH(2%),ENTH(2%)| 0 1 21 2746 1 ENST00000270460.11 ENST00000452460.1 downstream upstream duplicates(9),mismatches(2) AGTCGCCCCATCTCTCCACGCATCGGGGCCCTGTGCCCCTTGCTGCTGCAGCCGGGCACCATGTCGACCTCGTCCTTGAGGCGCCAGATGAAGAACATCGTCCACAACTACTCAGAGGCGGAGATCAAGGTTCGAGAGGCCACGAGCAATGACCCCTGGGGCCCATCCAGCTCCCTCATGTCAGAGATTGCCGACCTCACCTACAACGTTGTCGCCTTCTCGGAGATCATGAGCATGATCTGGAAGCGGCTCAATGACCATGGCAAGAACTGGCGTCACGTTTACAAG|GAGGAGGCAGAGCAAGATAGCCAGATAGAACCCTCCAGCGATCATCCCCCTGGAGGACATCAAATTGAACTATTCACCTAAGAAAGCACCTTCATAAGAATCTACATCATGGCCA MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYK|eeaeqdsqiepssdhppgghqielft* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18395 PBX1::BCAN-AS2 ENSG00000185630.20::ENSG00000229953.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164563311:+ chr1:164524821-164868533:+ chr1:164532548:+ BCAN-AS2 ENSG00000229953.1 lncRNA - - chr1:156646507-156661424:- chr1:156647154:- chr1:156616299-156631216:- chr1:156616946:- chr1:164690110,chr1:164690106 chr1:156650054,chr1:156650058 NA NA chr1:164659347,chr1:164659343 chr1:156619846,chr1:156619850 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none PBC_domain(25%)| PBC(1%)| 21 13 18 549 56 ENST00000699845.1 ENST00000448869.1 downstream downstream low_entropy(1),mismatches(8),multimappers(2) AGGAAGCAGGACATTGGAGACATTTTACAGCAAATTATGACCATCACAGACCAGAGTTTGGATGAGGCGCAGGCCAG___AAAACATGCTTTAAACTGCCACAGAATGAAGCCTGCCTTGTTTAATGTGTTGTGTGAAATCAAAGAAAAAACAG|CGTCGCTGCTGTCATCGATGCCGTGCTGGACCTCACAGCGATAGATACCTGAGTCGTTGGGGCGCAGCTCGCTCAGCGCCAGGGAGACGTCGGTGAGCGACGCTGGGTACGCAGGCAGTGCCACGCGGAACCGGTAGGCCTCGTTCACCTTGACGCGCACTCCCCGCGCCACCAGCACCTCTGCCTCCCGGCCCCGGGACAGGAAAGTCCACTTGACCCGCGGAGAGCCCAGCACAGCCCGGCGGCTCGGCGGTGGCCGCAGGTAGTGGACGTGGCAAGGGATGGTGAGGGCGCCGCCGAGCACGCCCTGCAGTGGCGCGTCGCCCGCGATGCGCACGCGAAAAGCGCGGTCCTCTGTGAACGG RKQDIGDILQQIMTITDQSLDEAQARKHALNCHRMKPALFNVLCEIKEKT|asllssmpcwtsqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 18398 ARHGAP42::LYPD6 ENSG00000165895.19::ENSG00000187123.15 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3185 FALSE NA ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ LYPD6 ENSG00000187123.15 protein_coding + + chr2:149329985-149474138:+ chr2:149437638:+ chr2:150186499-150330652:+ chr2:150294152:+ chr11:100700692,chr11:100700692 chr2:149373571,chr2:149373568 NA NA chr11:100571423,chr11:100571423 chr2:150230085,chr2:150230082 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none BAR_domain_of_APPL_family(19%)|Ly6/PLAUR_domain-containing_protein_6__Lypd6(100%) BAR_3(0%)|UPAR_LY6_2(100%) 3 3 3 55 86 ENST00000298815.13 ENST00000409381.5 downstream upstream mismatches(1) GCCGCCGGCTGCCCCCGCCCTGACCTCCGGCCCGGACGTGTCCGCGGCCGCCGCTGGCAGCGCCTGTGCCATGGGGCTGCCCACTCTGGAGTTCAGCGATTCCTACTTGGACAGCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|GTGCAAGTTCTCTCCTGTTGCCCTGAGTGCCCACTCCCAGGCCCTCTGTATGAGTGACACTTCAGTCTGCCATGGAACCTGGCCCTGCTCTGGCCTGGCTCCTGCTCCTGAGCCTGCTGGCGGATTGTCTGAAAGCTGCTCAGTCCCGAGACTTCACAGTGAAAGACATTATCT MGLPTLEFSDSYLDSPDFRERLQCHEIELERTNKFIKELIKDGSLLIGALR|sasslllp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18400 SRGAP3::ENSG00000270533 ENSG00000196220.17::ENSG00000270533.2 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRGAP3 ENSG00000196220.17 protein_coding - - chr3:8980591-9363053:- chr3:9248885:- chr3:9022275-9404737:- chr3:9290569:- ENSG00000270533 ENSG00000270533.2 transcribed_processed_pseudogene - - chr21:9975017-10119309:- chr21:9998048:- chr21:10453045-10597337:- chr21:10476076:- chr3:9201922,chr3:9201925 chr21:10100315,chr21:10100315 NA NA chr3:9243606,chr3:9243609 chr21:10578343,chr21:10578343 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 3 2 1 59 4 ENST00000383836.8 ENST00000604687.1 upstream downstream mismatches(1) CAGGGCTTGAGAGAGGACTCGAAAAGAAAAGGAGAAATAAATCAAACAGCCTGTCAGTTCCTTTGGCCACGTCAGAAGATGTCATCTCAAACTAAGTTCAAGAAAGACAAAGAGATCATTGCTGAATATGAAGCCCAAATAAAAG|CTACCCAAGGTGCGAAAAAGAAAGAAGGCCGAAGGGAAGAAGGTGGTGCTCACCCTTGCTGTCTTGAAAAAGCAGGAGACCATGAAAGTGGTGAATCTTCCATTTGAGAAATTTGGCACTGGA...AACATCCAGCCCAAAAGGGACCTCACTTACTTTGTCAAATGGCCCCATTATACTAGGTTGCAGCAGCAGAGAGCCATCCTCTATAAACAGCTAGAAGTGCCTTCTGTGATTAATCAGTTCACCAGGGCCTTGGACCACCAAACAGCTGCTCAATGGGGTAAGCGG MSSQTKFKKDKEIIAEYEAQIK|atqgakkkegrreeggahpcclekagdhesgessi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SLIT-ROBO Rho GTPase activating protein 3 2 pilocytic astrocytoma other fusion translocation FALSE NA NA NA NA NA NA NA NA NA 18401 ZNF74::FAM230G ENSG00000185252.19::ENSG00000188280.11 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF74 ENSG00000185252.19 protein_coding + + chr22:20394115-20408461:+ chr22:20395418:+ chr22:20748405-20762751:+ chr22:20749708:+ FAM230G ENSG00000188280.11 lncRNA + + chr22:20338805-20354372:+ chr22:20344494:+ chr22:20326328-20708662:+ chr22:20332017:+ chr22:20395633,chr22:20395631 chr22:20342010,chr22:20342005 NA NA chr22:20749923,chr22:20749921 chr22:20329533,chr22:20329528 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 2 2 92 4 ENST00000357502.5 ENST00000617303.4 downstream upstream none GCTGCTCTTTGTGGCAGTCGCAGTCCTTTTGTGGGAGTCCGGTCTGTCCACTTGCCGGTCCCTCAGACCGTCGGCGGTCTCTGTCCGCTTCGGGACCTGTC...CAG___CTCTTTCCTCTCAGGATCCTGCTCTTTCCCTGAAAGAGAATCTCGAGGATATATCGGGTTGGGGTCTTCCCGAAGCCAGGTCCAAG|AGAATACAAGAAGATATGCTGTGCACACCAACCAGTGTAGGAGACCTCATGGCTCCCGGGTAAAGAAGAAGAGGTACCCACAAGAAG___ATGACTTCCATCATACAGTCTTCAGCAATCTTGAAAGATTGGACAAGCTTCAGCCCACTCTTGAAG sSFLSGSCSFPERESRGYIGLGSSRSQVQ|entrryavhtnqcrrphgsrvkkkrypqeddfhhtvfsnlerldklqptle NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18407 DCAF5::ACTN1 ENSG00000139990.18::ENSG00000072110.16 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE TRUE 1735 FALSE NA FALSE NA DCAF5 ENSG00000139990.18 protein_coding - - chr14:69050881-69153150:- chr14:69116366:- chr14:69517598-69619867:- chr14:69583083:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68925672:- chr14:69340845-69446157:- chr14:69392389:- chr14:69093947,chr14:69093954 chr14:68962065,chr14:68962069 NA NA chr14:69560664,chr14:69560671 chr14:69428782,chr14:69428786 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none WD_domain__G-beta_repeat(66%)|Ca2+_insensitive_EF_hand(100%),Calponin_homology_(CH)_domain(98%),EF-hand_domain_pair(100%),Spectrin_repeat(100%) WD40(85%)|CAMSAP_CH(100%),CH(40%),EF-hand_5(100%),EF-hand_8(100%),EFhand_Ca_insen(100%),Spectrin(100%) 6 8 7 140 1210 ENST00000341516.10 ENST00000193403.10 upstream downstream mismappers(3),mismatches(2) CAGTTCCTCAGATGATGGCCGGGTTCTCATTTGGGACATTCGGGAATCCCCCCATGGAG___AGCCCTTCTGCCTGGCAAACTATCCATCAGCCTTTCATAGTGTCATGTTTAACCCTGTGGAGCCCAGGTTGTTGGCCACAGCCAATTCAAAGGAAGGAGTGGGACTCTGGGACATTCGAAAACCTCAGAG|ACATTCACGGCATGGTGTAACTCCCACCTCCGGAAGGCGGGGACACAGATCGAGAACATCGAAGAGGACTTCCGGGATGGCCTGAAGCTCATGCTGCTGCTGGAGGTCATCTCAG___GTGAACGCTTGGCCAAGCCAGAGCGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAA SSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQr|hsrhgvtptsgrrghrsrtskrtsgma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18408 RORA::ANXA2 ENSG00000069667.16::ENSG00000182718.18 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3186 FALSE NA RORA ENSG00000069667.16 protein_coding - - chr15:60488284-61229302:- chr15:61229053:- chr15:60780483-61521501:- chr15:61521252:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60357236:- chr15:60639333-60695082:- chr15:60649435:- chr15:60778464,chr15:60778469,chr15:60778466 chr15:60357579,chr15:60357581,chr15:60357681 NA NA chr15:61070663,chr15:61070668,chr15:61070665 chr15:60649778,chr15:60649780,chr15:60649880 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |Annexin(71%) |Annexin(16%) 2 2 6 29 25884 ENST00000335670.11 ENST00000559818.6 upstream downstream none ATGGAGTCAGCTCCGGCAGCCCCCGACCCCGCCGCCAGCGAGCCAGGCAGCAGCGGCGCGGACGCGGCCGCCGGCTCCAGGGAGACCCCGCTGAACCAGGAATCCGCCCGCAAGAGCGAGCCGCCTGCCCCGGTGCGCAGACAGAGCTATTCCAGCACCAGCAGAG|GGGCTGGGAACCGACGAGGACTCTCTCATTGAGATCATCTGCTCCAGAACCAACCAGGAGCTGCAGGAAATTAACAGAGTCTACAAGGAAA___TGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAG___GGTAGAAGAGCAGAGGATGGCTC...GAGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACCGAGCGGAGCGTGCCCCACCTCCAGAAAG___TATTTGATAGGTACAAGAGTTAC MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKSEPPAPVRRQSYSSTSR|gagnrrglsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18421 PDE4DIPP2::ENSG00000290999 ENSG00000275131.4::ENSG00000290999.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4DIPP2 ENSG00000275131.4 transcribed_unprocessed_pseudogene - - chr1:120489860-120701289:- chr1:120516824:- chr1:144852443-145075862:- chr1:144879035:- ENSG00000290999 ENSG00000290999.1 lncRNA - - chr1:120519468-120548357:- chr1:120520669:- chr1:144881680-144921903:- chr1:144882881:- NA NA chr1:149006035,chr1:149006032 chr1:149001322,chr1:149001322 chr1:144878437,chr1:144878440 chr1:144883150,chr1:144883150 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 6 3 0 38 68 ENST00000612480.2 ENST00000647832.1 upstream downstream duplicates(1),mismatches(3) GTTGGCACCTTGGAGGGGTCTTCACCTCATAGTGTCCCTGATGAGGATGAGGGGTGGCTGTCTGATGGCACTGGGGCTTTCTACTCTCCAGGGCTTCAGGCCAAAAAGGACCTGGAGAGTCTCATCCAGAGAGTATCCCAGCTGGAGGCCCAGCTCCCAGAAAATGGACTAGAAGAGAAGCTGGCTGAGGAGCTGAGATCAGCCTCGTGGCCTGG|GAACACCATGCTGAGCCTTTGCCTTGAGAATGCGGAGCTGAAAGAGCAGATGGGAGAAACAATGTCTGATGGATGGGAGATCGAGGAAGACAAGGAGAAGGGCGAGGTGATGGTTGAGACTGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18423 DDX21::LINC00839 ENSG00000165732.14::ENSG00000185904.12 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DDX21 ENSG00000165732.14 protein_coding + + chr10:68956135-68985068:+ chr10:68957938:+ chr10:70715891-70744824:+ chr10:70717694:+ LINC00839 ENSG00000185904.12 lncRNA + + chr10:42475480-42495337:+ chr10:42477347:+ chr10:42970928-42990785:+ chr10:42972795:+ NA NA NA NA NA NA NA NA sense sense stop-codon intron exon duplication low none none none 5 0 0 0 50 ENST00000354185.9 ENST00000659650.1 downstream upstream none CTGCGCTGAAGATGCCGGGAAAACTCCGTAGTGACGCTGGTTTGGAATCAGACACCGCAATGAAAAAAGGGGAGACACTGCGAAAGCAAACCGAGGAG___TAGTATGAAAAGTTGTAG|CGACCTCGCCTTCCGCTGCGCGTCCTCCCAGAGCCCAAGAAGCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18441 ARID1A::MAU2 ENSG00000117713.21::ENSG00000129933.21 DB SRR8615952 SRR8639211 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) metastasis arriba TRUE TRUE TRUE 1736 TRUE 3193 TRUE 1205 ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19335718:+ chr19:19431638-19469563:+ chr19:19446527:+ chr1:26699679,chr1:26699677 chr19:19324592,chr19:19324587 NA NA chr1:27026170,chr1:27026168 chr19:19435401,chr19:19435396 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Cohesin_loading_factor(87%) |Cohesin_load(57%),TPR_8(9%) 0 35 3 80 505 ENST00000324856.13 ENST00000262815.13 downstream upstream duplicates(14),mismatches(6) CGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAG|TGGTTGATATCACAGCAA___ATCCCaCAGTTCGAAGATGTTAAATTTGAAGCAGCAAGTCTGTTGTCTGAATTGTACTGTCAAGAG___AATTCCGTTGATGCAGCAAAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGACCCCATATTGGCACTGCCGCCTGCTCTTCCAGCTCGCT___CAACTGCACACGCTTGAGAAGGACCTGGTGTCtGCCTGTGACCTCCTGGGTGTAGGGGCCGAGTACGCCCGGGTGGTGGGATCTGAATACACACG___GGCGCTGTTCCTCCTCAGCAAGGGGATG___CTGCTGCTGATGGAGCGAAAGCTGCAGGAGGTGCACCCGCTGCTG AAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQ|WLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYARVVGSEYTRALFLLSKGMLLLMERKLQEVHPL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 18442 ARID1A::MAU2 ENSG00000117713.21::ENSG00000129933.21 DB SRR8615952 SRR8639211 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3193 TRUE 1205 ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19337170:+ chr19:19431638-19469563:+ chr19:19447979:+ chr1:26699679,chr1:26699677 chr19:19324592,chr19:19324587 NA NA chr1:27026170,chr1:27026168 chr19:19435401,chr19:19435396 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Cohesin_loading_factor(82%) |Cohesin_load(52%),TPR_8(0%) 0 1 3 80 453 ENST00000324856.13 ENST00000262815.13 downstream upstream mismatches(2) GCGGaGGCAGCTGCGGCGGCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGC?CGCCCGGACCCCTCAG|AATTCCGTTGATGCAGCAAAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGACCCCATATTGGCACTGCCGCCTGCTCTTCCAGCTCGCT___CAACTGCACACGCTTGAGAAGGACCTGGTGTCtGCCTGTGACCTCCTGGGTGTAGGGGCCGAGTACGCCCGGG AeAAAAAAASGGAQQRSHHAPMSPGSSGGGGQP?ARTPQ|NSVDAAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 18479 GATAD2B::PGLYRP3 ENSG00000143614.11::ENSG00000159527.4 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- PGLYRP3 ENSG00000159527.4 protein_coding - + chr1:153297116-153312952:- chr1:153311097:+ chr1:153269592-153285428:- chr1:153283573:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 48 21 2 926 422 ENST00000368655.5 unknown upstream upstream duplicates(303),low_entropy(1),mismatches(2) CCCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|GTAAGAACATTGAGGCTCAGATGGAGTGAACTACAAGCAGAAGCAGGCTTGGCTTCGCCCCCTGCACCATTTGAGAGTCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18480 CNOT2::PTPRR ENSG00000111596.14::ENSG00000153233.13 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE TRUE 1738 TRUE 3200 TRUE 1206 CNOT2 ENSG00000111596.14 protein_coding + + chr12:70243002-70354993:+ chr12:70319364:+ chr12:70636782-70748773:+ chr12:70713144:+ PTPRR ENSG00000153233.13 protein_coding - - chr12:70638073-70920738:- chr12:70764778:- chr12:71031853-71314518:- chr12:71158558:- chr12:70321362 chr12:70778948 NA NA chr12:70715142 chr12:71172728 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Protein-tyrosine_phosphatase(100%) |Y_phosphatase(100%) 14 7 13 657 135 ENST00000418359.7 ENST00000283228.7 downstream downstream duplicates(236),low_entropy(2),mismatches(4) AACTACCAG___...CAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGAAAACATGTACTACAGCCAGTCTTCTATGTTTCCACATCGGTCAGAAAAAGAT___ATGCTGGCATCACCATCTACATCAGGTCAGCTGTCTCAGTTTGGGGCAAGTTTATACGGGCAACAAA|ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATT___GGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCC SMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQ|ntangckqaehnlasdlpprsgcsfrtltpasahqsphwkeeqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18481 CNOT2::PTPRR ENSG00000111596.14::ENSG00000153233.13 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE TRUE 1739 TRUE 3200 TRUE 1206 CNOT2 ENSG00000111596.14 protein_coding + + chr12:70243002-70354993:+ chr12:70311017:+ chr12:70636782-70748773:+ chr12:70704797:+ PTPRR ENSG00000153233.13 protein_coding - - chr12:70638073-70920738:- chr12:70764778:- chr12:71031853-71314518:- chr12:71158558:- chr12:70321362 chr12:70778948 NA NA chr12:70715142 chr12:71172728 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Protein-tyrosine_phosphatase(100%) |Y_phosphatase(100%) 5 4 6 798 135 ENST00000418359.7 ENST00000283228.7 downstream downstream duplicates(98),mismatches(2) GGGCGGTCCTTCCTGTGACACGACCCTTGAGTGACAGTTCTATTTGATTGCCTCCGGTACTGTGAGGAAAGGACACGACTCTATGGTGAGGACTGATGGACATACATTATCTGAGAAAAGAAACTACCAG___GTGACAAACAGCATGTTTGGTGCTTCAAGAAAGAAGTTTGTAGAGGGGGTCGACAGTGACTACCATGACGAAAACATGTACTACAGCCAGTCTTCTATGTTTCCACATCGGTCAGAAAAAGAT|ACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATT___GGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAG___AAAAATGTTTTACAAGGGC MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKD|TLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPEKNVLQG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18484 NUP210L::GATAD2B ENSG00000143552.10::ENSG00000143614.11 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154089421:- chr1:153965166-154127592:- chr1:154061897:- GATAD2B ENSG00000143614.11 protein_coding - + chr1:153789030-153923360:- chr1:153825877:+ chr1:153761506-153895836:- chr1:153798353:+ chr1:154082537,chr1:154082541,chr1:154082541,chr1:154082546,chr1:154086001 chr1:153811044,chr1:153811040,chr1:153810904,chr1:153811040,chr1:153814514 NA NA chr1:154055013,chr1:154055017,chr1:154055017,chr1:154055022,chr1:154058477 chr1:153783520,chr1:153783516,chr1:153783380,chr1:153783516,chr1:153786990 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 5 0 2 268 28 ENST00000271854.3 unknown upstream upstream duplicates(42),mismappers(1),mismatches(1) CATCTAAGAGAAAACAGAACCAGTACATCTACCGGATCCAATGCCTGGATTTAGGGGAACAA___GTTCTCACATTCCGAATTGGAAATCATCCAGGTGTCCTGAACCCTAGTCCAGCTGTAGAGGTTTTGCAGGTTCGCTTCATTTGTGCCCACCCTGCCAGTATGTCAGTAACTCCAGTATACAAGGTGCCAGCTGGTGCCCAGCCATGTCCTCTGCCACAGCACAACAAATGGCTG|TCCAGCTTCTTAGAGATTCTGCTTTGGATGAGTCCTACAACAAACTCAGCAAGGTCATTTGGAGGGCAACTCAACACTGAAGACTAATTCTCACAGCTATCAGCTGTTTCTGAACTATTTATAAACTGACTTTTTTTTTTTTTTTCAGACGAAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAG...ATCGCGGCTCACTGCAACCTCCACCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCCAAGTAGCGGGGACTACAGGCgCCTGCCACCATGCCTGGCA SKRKQNQYIYRIQCLDLGEQVLTFRIGNHPGVLNPSPAVEVLQVRFICAHPASMSVTPVYKVPAGAQPCPLPQHNKWL|ssfleillwmspttnsarsfggqlnted* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5698 chr1:154104521-154104592:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18486 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE TRUE 1741 TRUE 3201 TRUE 1207 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154104210:- chr1:153965166-154127592:- chr1:154076686:- chr1:153893404 chr1:154110200 NA NA chr1:153865880 chr1:154082676 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Bacterial_Ig-like_domain_(group_2)(100%) |Big_2(100%) 3 1 0 926 447 ENST00000368655.5 ENST00000271854.3 upstream downstream duplicates(19),mismatches(1) GTCCGGCCCGCCCCCCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|ATACATGTCCTGAAACTGAACAAAATGGAACTGTTACCATTTCATGCTGATGTGGAGATTGGCCAGATTATA...CTGAACATGGATAAACAAGGAGTCTTTACTCTTCTCAAAGAAG___GTATTCAAAGACCTGGACCAATGCATTGTTCCAGTACACATATCGCAGCTAAAaCTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,TRUE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18487 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3201 TRUE 1207 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154135972:- chr1:153965166-154127592:- chr1:154108448:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Bacterial_Ig-like_domain_(group_2)(100%) |Big_2(100%) 1 0 1 926 190 ENST00000368655.5 ENST00000271854.3 upstream downstream duplicates(5),mismatches(1) CCCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|AGGTGAAATTTCCCCTGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-5698 chr1:154104521-154104592:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18488 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3201 TRUE 1207 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154127417:- chr1:153965166-154127592:- chr1:154099893:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Bacterial_Ig-like_domain_(group_2)(100%) |Big_2(100%) 0 1 1 926 358 ENST00000368655.5 ENST00000271854.3 upstream downstream duplicates(9),mismatches(1) CCTCCCCTACCCCCGTCCCTAGTCCCGTCAGCAGGGTCTGGATCCCCTGTGCCGTCGCCTCTTCCTTTTTCGACGCCTCCGCCGCCGCCTGAGGAGGCGAGCTAGCCGGGAGTTACACCGCCACCGCCAG|GTTTCACTGTCCAACCTGGAAACCGATGGAGTCTAGAGGTGGGACAGGTATATGTC...AATCTCAGGATTACATACGACTTTCCTAAGGAGTACTTTGAAGAGCAACTAACTACCGTGAATGGATCTTACCATATAGTAAAAGCCCTGAAAGATGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-5698 chr1:154104521-154104592:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18492 XPNPEP1::PLXDC2 ENSG00000108039.18::ENSG00000120594.17 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE TRUE 1742 FALSE NA FALSE NA XPNPEP1 ENSG00000108039.18 protein_coding - - chr10:109864766-109923553:- chr10:109875528:- chr10:111624524-111683311:- chr10:111635286:- PLXDC2 ENSG00000120594.17 protein_coding + + chr10:19816239-20289856:+ chr10:20164468:+ chr10:20105168-20578785:+ chr10:20453397:+ chr10:109875127,chr10:109875129 chr10:20163780,chr10:20163778 NA NA chr10:111634885,chr10:111634887 chr10:20452709,chr10:20452707 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Creatinase/Prolidase_N-terminal_domain(100%),Metallopeptidase_family_M24(43%)|Plexin_repeat(100%) Creatinase_N(100%),Creatinase_N_2(100%),Peptidase_M24(48%)|PSI(100%) 1 1 1 206 44 ENST00000369683.5 ENST00000377252.5 upstream upstream duplicates(47) CCCAACGGCGCCATCATTCACTACGC___GCCAGTCCCTGAGACGAATAGGACCTTGTCCCTGGATGAGGTGTACCTTATTGACTCGGGTGCTCAATACAA|ATTCCTGTCTTGGTCACACAGATAAGTTCAACCAATCATCCAGTGAAAGTCGGACTGTCCGATGCATTTGTCGTTGTCCACAGGATCCAACAAATTCCCAGTACGTAGAAGAAGGGCAGTCGCAATGAGTGAG PNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYk|flswshr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18497 MBNL2::WDFY2 ENSG00000139793.21::ENSG00000139668.9 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBNL2 ENSG00000139793.21 protein_coding + + chr13:97221434-97394120:+ chr13:97334440:+ chr13:97873688-98046374:+ chr13:97986694:+ WDFY2 ENSG00000139668.9 protein_coding + - chr13:51584455-51767709:+ chr13:51722453:- chr13:52158591-52341845:+ chr13:52296589:- chr13:97339521 chr13:51725268 NA NA chr13:97991775 chr13:52299404 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none RNA-binding__Nab2-type_zinc_finger(50%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(48%)| zf-CCCH(2%),zf-CCCH_2(99%)| 0 1 1 91 9 ENST00000397601.5 unknown downstream downstream duplicates(13),mismatches(2) CTCCGACACACTTAAAAACTCAACTAGAAATTAATGGAAGGAACAATTTGATTCAGCAAAAAACTGCAGCAGCAATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACACCACTTCATCCAGTG|GTCATTTATATTTGAAGCTTCAGATCTTCGGTCAAAACAATCAAAGAATTTGAAGTTATTCATAAATTGATAATTCAATTTATGAACCAGTCTCTTTGTCTTCCTTTACTTTTCTACTTGAATTTTGGTTATTTTCATTGCATATTTACTTCTCCACTAAGACGCCTGAAAGAAGAGGAATAAAGGCTGA PTHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMFPGTPLHPV|viyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18499 FNDC3A::SETDB2 ENSG00000102531.16::ENSG00000136169.17 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FNDC3A ENSG00000102531.16 protein_coding + + chr13:48975912-49209779:+ chr13:49075364:+ chr13:49550048-49783915:+ chr13:49649500:+ SETDB2 ENSG00000136169.17 protein_coding + + chr13:49444274-49495003:+ chr13:49480219:+ chr13:50018410-50069139:+ chr13:50054355:+ chr13:49109217,chr13:49109218 chr13:49479743,chr13:49479741 NA NA chr13:49683353,chr13:49683354 chr13:50053879,chr13:50053877 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |Pre-SET_motif(50%),SET_domain(100%) |Pre-SET(18%),SET(100%) 3 0 0 109 31 ENST00000541916.5 ENST00000611815.2 downstream upstream duplicates(18) CTGCAGTCCTCGCCCGGTTTTAACAACCTGGATCTTCGAACTTTTGACACGGCTTTGGAAACGACGTCATGTGTTAG___...ACAG___GTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAG|AACAAAATGTGCATGTCTTCAACTGACAGCAAGGAATGCCAAAACTTCCCCCTTGTCAAGTGACAAAATAACCACTGGATATAAATATAAAAG QVILVQVNPGEAFTIRREDGQFQCIT|eqnvhvfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18500 NSDHL::ENSG00000258526 ENSG00000147383.11::ENSG00000258526.8 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NSDHL ENSG00000147383.11 protein_coding + + chrX:152830967-152869729:+ chrX:152831117:+ chrX:151999511-152038273:+ chrX:151999661:+ ENSG00000258526 ENSG00000258526.8 lncRNA + - chr14:39432599-40390547:+ chr14:39630286:- chr14:39901803-40859751:+ chr14:40099490:- chrX:152832936,chrX:152832934 chr14:39632638,chr14:39632640 NA NA chrX:152001480,chrX:152001478 chr14:40101842,chr14:40101844 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' medium none none none 0 2 0 546 58 ENST00000440023.5 unknown downstream downstream duplicates(15),mismappers(2),multimappers(2) CCGGGCCTGGAGTTCAGTGGGTGCAGCCTGCTTGCGAGCTGAGGCCAGACAGGGGGGCGCCTACGGACGG|TCTTGCTAGCGGTCTATCAATTTTGTTGATCCTTTCAAAAAACCAGCTCAAATGGGATCTAATTAAACTAGAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTAC...ATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCaAAGGACATGAACAGACACTTCTCAAAAGAAG...ATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAG...ATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGACATGAACAGACACTTCTCAAAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18501 CLN5::TBC1D4 ENSG00000102805.16::ENSG00000136111.14 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLN5 ENSG00000102805.16 protein_coding + + chr13:76990660-77019143:+ chr13:76992271:+ chr13:77564795-77593278:+ chr13:77566406:+ TBC1D4 ENSG00000136111.14 protein_coding - + chr13:75283503-75482169:- chr13:75326291:+ chr13:75857639-76056305:- chr13:75900427:+ chr13:76994709,chr13:76994710 chr13:75321270,chr13:75321258 NA NA chr13:77568844,chr13:77568845 chr13:75895406,chr13:75895394 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Ceroid-lipofuscinosis_neuronal_protein_5(1%)| CLN5(0%)| 0 2 0 69 35 ENST00000636525.2 unknown downstream upstream duplicates(17) CGGGCTGGTCCCGGGTCTCGGGCATCCCCTCCCGGCGCCACTGGCCGGTGCCCTACAA|GTGGGTGGCTGAACGTGTGTGCCCGTCTTCGAAACTGCGGGGAGTCGGAATCCTCTTCGGGAAACGTTTGCCAAGCTGAGGACGGTGGGGACGCTGGCGGTGTCCCTGGTGGAGAATCCCC...TTTATTTCCCACGTGGGTCATGGCAGACCTGCCAAAACACAGAGCTCAAAAGTGACAGTGTGCCTCATCTTCCTCCTGAGTCATGACAAAACTGTTTTTC GWSRVSGIPSRRHWPVPYk|wvaervcpssklrgvgilfgkrlps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18502 ENSG00000283208::TBC1D4 ENSG00000283208.2::ENSG00000136111.14 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283208 ENSG00000283208.2 protein_coding + + chr13:76992078-77129589:+ chr13:76992271:+ chr13:77566213-77703724:+ chr13:77566406:+ TBC1D4 ENSG00000136111.14 protein_coding - + chr13:75283503-75482169:- chr13:75326291:+ chr13:75857639-76056305:- chr13:75900427:+ chr13:76994709,chr13:76994710 chr13:75321270,chr13:75321258 NA NA chr13:77568844,chr13:77568845 chr13:75895406,chr13:75895394 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' medium none Ceroid-lipofuscinosis_neuronal_protein_5(4%)| CLN5(0%)| 0 2 0 69 35 ENST00000638147.2 unknown downstream upstream duplicates(17) CGGGCTGGTCCCGGGTCTCGGGCATCCCCTCCCGGCGCCACTGGCCGGTGCCCTACAA|GTGGGTGGCTGAACGTGTGTGCCCGTCTTCGAAACTGCGGGGAGTCGGAATCCTCTTCGGGAAACGTTTGCCAAGCTGAGGACGGTGGGGACGCTGGCGGTGTCCCTGGTGGAGAATCCCC...TTTATTTCCCACGTGGGTCATGGCAGACCTGCCAAAACACAGAGCTCAAAAGTGACAGTGTGCCTCATCTTCCTCCTGAGTCATGACAAAACTGTTTTTC GWSRVSGIPSRRHWPVPYk|wvaervcpssklrgvgilfgkrlps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18517 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1743 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36581739:+ chr9:36572859-36677680:+ chr9:36581736:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(3%)|Zinc_knuckle(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|zf-CCHC(100%),zf-CCHC_3(100%) 42 39 203 453 452 ENST00000536860.5 ENST00000336755.10 downstream upstream duplicates(38),low_entropy(5),mismappers(1),mismatches(21) AAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG___GTTCTTTTTCTAATTCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG|GAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAG___GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTG MKDYDELLKYYELHETIGT|gEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18518 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1744 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36583712:+ chr9:36572859-36677680:+ chr9:36583709:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(15%)|Zinc_knuckle(100%) PK_Tyr_Ser-Thr(3%),Pkinase(3%)|zf-CCHC(100%),zf-CCHC_3(100%) 11 17 208 333 452 ENST00000536860.5 ENST00000336755.10 downstream upstream duplicates(36),mismappers(1),mismatches(14) CCCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAGGTCAGTTCTCCCGCCTGCCCGCCGCAGTCGCAGTTGATGGCTGGGGTCTGGGCTGTGCGGGGCGCAGCGGCCCAAA...CAGCCCTGTTCCCTGGATAAGATATTTGACCTTTCCGACCCGCGGTTTTCTTCTCC___GTTCTTTTTCTAATTCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG___GTGGCTTTGCAAAGGTCAAACTTGCCTGCCATATCCTTACTGGAGAGATGGTAGCTATAAAAATCATGGATAAAAACACACTAGGG|GAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAG___GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTG MKDYDELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLG|ekmv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18519 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1745 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573007:+ chr9:36572859-36677680:+ chr9:36573004:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Zinc_knuckle(100%) |zf-CCHC(100%),zf-CCHC_3(100%) 4 13 77 1096 452 ENST00000543751.5 ENST00000336755.10 downstream upstream duplicates(22),mismatches(5) GCGGCCACAACCCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG|GAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAG___GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGA___AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18520 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573007:+ chr9:36572859-36677680:+ chr9:36573004:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37305544:+ chr9:37120571-37358146:+ chr9:37305541:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none |zf-CCHC_3(100%) 0 2 24 1096 495 ENST00000543751.5 ENST00000336755.10 downstream upstream duplicates(2),mismatches(3) GCGGAAGCGGCCACAACCCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG|AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGAT___GCTTGCACAGAAATCTGGAGGCAGTATCACCTAACG___ACCAAACCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18521 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36581739:+ chr9:36572859-36677680:+ chr9:36581736:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37304188:+ chr9:37120571-37358146:+ chr9:37304185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Protein_kinase_domain(3%)|Zinc_knuckle(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|zf-CCHC(100%),zf-CCHC_3(100%) 3 2 144 453 597 ENST00000543751.5 ENST00000336755.10 downstream upstream duplicates(24),mismappers(1),mismatches(9) AAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG___GTTCTTTTTCTAATTCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG|GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGA___AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTG MMNFSNIMNYMKLLGQ|AQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18522 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573198:+ chr9:36572859-36677680:+ chr9:36573195:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |Zinc_knuckle(100%) |zf-CCHC(100%),zf-CCHC_3(100%) 0 1 96 228 452 ENST00000487398.3 ENST00000336755.10 downstream upstream duplicates(21),mismatches(6) CCCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAGGTCAGTTCTCCCGCCTGCCCGCCGCAGTCGCAGTTGATGGCTGGGGTCTGGGCTGTGCGGGGCGCAGCGGCCCAAACCCAGTTTGCTCCTGGCTCTCGGGAGACTGGAGGATTTCATCGGAGCCCCGCGCTTTACCAGCCCTGTTCCCTGGATAAGATATTTGACCTTTCCGACCCGCGGTTTTCTTCTCC|GAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAG___GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18523 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36581739:+ chr9:36572859-36677680:+ chr9:36581736:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37305544:+ chr9:37120571-37358146:+ chr9:37305541:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Protein_kinase_domain(3%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)|zf-CCHC_3(100%) 2 1 63 453 495 ENST00000543751.5 ENST00000336755.10 downstream upstream duplicates(5),mismatches(6) AAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG___GTTCTTTTTCTAATTCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG|AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGAT___GCTTGCACAGAAATCTGGAGGCAGTATCACCTAACG___ACCAAACCTGGACCACCCAAAAAGCC MMNFSNIMNYMKLLGQ|KVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18524 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36583712:+ chr9:36572859-36677680:+ chr9:36583709:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37305544:+ chr9:37120571-37358146:+ chr9:37305541:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Protein_kinase_domain(15%)| PK_Tyr_Ser-Thr(3%),Pkinase(3%)|zf-CCHC_3(100%) 0 1 65 333 495 ENST00000536860.5 ENST00000336755.10 downstream upstream duplicates(5),mismatches(6) TCCAAATAAACTTGCAAGAGGACTATGAAAGATTATGATGAACTTCTCAAATATTATGAATTACATGAAACTATTGGGACAG___GTGGCTTTGCAAAGGTCAAACTTGCCTGCCATATCCTTACTGGAGAGATGGTAGCTA...AAATCATGGATAAAAACACACTAGGG|AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGAT___GCTTGCACAGAAATCTGGAGGCAGTATCACCTAACG___ACCAAACCTGGACCACCCAAAAAGCC IMDKNTLG|KVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18525 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573007:+ chr9:36572859-36677680:+ chr9:36573004:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37304188:+ chr9:37120571-37358146:+ chr9:37304185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Zinc_knuckle(100%) |zf-CCHC(100%),zf-CCHC_3(100%) 0 2 59 1096 597 ENST00000543751.5 ENST00000336755.10 downstream upstream duplicates(14),mismatches(4) AGCGGCCACAACCCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAG|GCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGA___AAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18526 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573198:+ chr9:36572859-36677680:+ chr9:36573195:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37305544:+ chr9:37120571-37358146:+ chr9:37305541:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none none |zf-CCHC_3(100%) 0 1 28 228 495 ENST00000487398.3 ENST00000336755.10 downstream upstream duplicates(3),mismatches(3) CCGGCGATCGAAAAGATTCTTAGGAACGCCGTACCAGCCGCGTCTCTCAGGACAGCAGGCCCCTGTCCTTCTGTCGGGCGCCGCTCAGCCGTGCCCTCCGCCCCTCAGGT...GCAGTCGCAGTTGATGGCTGGGGTCTGGGCTGTGCGGGGCGCAGCGGCCCAAACCCAGTTTGCTCCTGGCTCTCGGGAGACTGGAGGATTTCATCGGAGCCCCGCGCTTTACCAGCCCTGTTCCCTGGATAAGATATTTGACCTTTCCGACCCGCGGTTTTCTTtTCC|AAAGTTCGTCtCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGAT___GCTTGCACAGAAATCTGGAGGCAGTATCACCTAACG___ACCAAACCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18528 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1746 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20290652:- chr2:20448452-20551995:- chr2:20490413:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27870890:- chr2:28004246-28113548:- chr2:28093757:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(95%) |PfkB(82%),Phos_pyr_kin(100%) 4 8 34 694 55 ENST00000704930.1 ENST00000449378.1 upstream downstream duplicates(3) CAGCAGCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG___GTTCTCCGTGCTGGAGCAGGTCAGCGTCCTCTTACTCCCAATCAGGGTCAGCAAGGGCAGCAAGCAGAATCACTTGCGGCAGCTGCAGCAGCAAATCCAACATTGGCTTTTGGTCAGGGTCTTGCTACTGGCATGCCAG|GAGGATGTGCATGAGGATATGTTATGTGCACTTTTGTTGCCAGCCCACACCACAGCTGCAGAACTGTTCAAGTCTTTGCGTGATTACATGTCAGGAAAACTGAACTGGTCATTTTGTGTGAGTATATGCATGGACAGAGTGGCTGCCATGGCTGGACAGCTTCTGGTTTCACTACTCACATCAAAGAGGTTGCTTCTGAATGTGAGTCTACACACCATGTCATCCATAGAGAAATGCTGGCTAGCCAAAAAATGTCACCTGAACTTAACAGCATTTTGCAGGATGTGATTAAAATTATCAACCACGTTAAAGTACATGCCCTTAACTCACGTCTCTTCGCACAGCTCTGTGAGGAGGTGGGTGCAGTGCACA QQQAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMP|ggca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18529 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1747 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20294376:- chr2:20448452-20551995:- chr2:20494137:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27870890:- chr2:28004246-28113548:- chr2:28093757:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(95%) |PfkB(82%),Phos_pyr_kin(100%) 9 8 25 761 55 ENST00000704930.1 ENST00000449378.1 upstream downstream duplicates(2),low_entropy(1) GCTACATTAGCAG___GTCCAGCAGTGGTTCCACCTCAGTATTACGGCGTTCCATGGGGGGTGTATCCAGCCAACTTATTTCAGCAGCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG|GAGGATGTGCATGAGGATATGTTATGTGCACTTTTGTTGCCAGCCCACACCACAGCTGCAGAACTGTTCAAGTCTTTGCGTGATTACATGTCAGGAAAACTGAACTGGTCATTTTGTGTGAGTATATGCATGGACAGAGTGGCTGCCATGGCTGGACAGCTTCTGGTTTCACTACTCACATCAAAGAGGTTGCTTCTGAATGTGAGTCTACACACCATGTCATCCATAGAGAAATGCTGGCTAGCCAAAAAATGTCACCTGAACTTAACAGCATTTTGCAGGATGTGATTAAAATTATCAACCACGTTAAAG...ACCAACTGCTTGAGATCGCAAATGACGGTGGCCTTAAAAGTATGTTGAAACAGCTTCAAATCTTCACACAGTCCGGATTGAAGTCAAGGCATAATATCCAGA ATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQ|edvhedmlcalllpahttaaelfkslrdymsgklnwsfcvsicmdrvaamagqllvslltskrlllnvslhtmssiekcwlakkchlnltafcrm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18530 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1748 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20290652:- chr2:20448452-20551995:- chr2:20490413:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27858571:- chr2:28004246-28113548:- chr2:28081438:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(95%) |PfkB(70%),Phos_pyr_kin(100%) 8 7 20 694 51 ENST00000704930.1 ENST00000302188.8 upstream downstream duplicates(3),low_entropy(1) GCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG___GTTCTCCGTGCTGGAGCAGGTCAGCGTCCTCTTACTCCCAATCAGGGTCAGCAAGGGCAGCAAGCAGAATCACTTGCGGCAGCTGCAGCAGCAAATCCAACATTGGCTTTTGGTCAGGGTCTTGCTACTGGCATGCCAG|TCTTACTTCTCGTTTGCCAAAAACTGGAGAAACCATCCATGGACATAAGTTTTTTATTGGCTTTGGAGGGAAAGGTGCCAACCAGTGTGTCCAAGCTGCTCGGCTTGGAGCAATGACGTCCATGGTGTGTAAG___GTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTCTACAG___AATTTACATATCAGACTAAAGATGCTGCTACAGGA QAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMP|vlllvcqklekpsmdisfllalegkvptsvskllgleq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18531 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20294376:- chr2:20448452-20551995:- chr2:20494137:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27858571:- chr2:28004246-28113548:- chr2:28081438:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(95%) |PfkB(70%),Phos_pyr_kin(100%) 6 2 15 761 51 ENST00000704930.1 ENST00000302188.8 upstream downstream duplicates(1),mismatches(1) CTCAGAATCTGGATGCCATGGAACAAGTTGGTCTGGAATCCTTACAGTTTGACTATCCTGGTAATCAGGTACCAATGGACTCTTCAGGAGCTACTGTAGGC...CAGGGACCGATCCGTATACTGCAGCAGGATTGGCTGCAGCAGCTACATTAGCAG___GTCCAGCAGTGGTTCCACCTCAGTATTACGGCGTTCCATGGGGGGTGTATCCAGCCAACTTATTTCAGCAGCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG|TCTTACTTCTCGTTTGCCAAAAACTGGAGAAACCATCCATGGACATAAGTTTTTTATTGGCTTTGGAGGGAAAGGTGCCAACCAGTGTGTCCAAGCTGCTCGGCTTGGAGCAATGACGTCCATGGTGTGTAAG___GTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTCTACAG___AATTTACATATCAGACTAAAGATGCTGCTACAGGAACTGCTTCTATAATTGTCAATAATGAAG___GCCAGAATATCATTGTC GTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQ|syfsfaknwrnhpwt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18532 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20294376:- chr2:20448452-20551995:- chr2:20494137:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27861546:- chr2:28004246-28113548:- chr2:28084413:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(95%) |PfkB(73%),Phos_pyr_kin(100%) 1 1 16 761 8 ENST00000704930.1 ENST00000453412.1 upstream downstream duplicates(1) GCTACATTAGCAG___GTCCAGCAGTGGTTCCACCTCAGTATTACGGCGTTCCATGGGGGGTGTATCCAGCCAACTTATTTCAGCAGCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG|GAGATACATCAGGACACAGTGATGAACATTTGTTGAATTAGTGCATGAATGAAGGAATATATGACTTCTAGTTACAGTTCTTGCTTGTGGAAGAGGAATGCTGCTGATACTGGGAGTGCAGTGGGCAAGATCTG___TCTTACTTCTCGTTTGCCAAAAAC ATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQ|eihqdtvmnic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18533 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20294376:- chr2:20448452-20551995:- chr2:20494137:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27848097:- chr2:28004246-28113548:- chr2:28070964:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |pfkB_family_carbohydrate_kinase(80%) |PfkB(61%),Phos_pyr_kin(100%) 0 1 9 761 43 ENST00000704930.1 ENST00000302188.8 upstream downstream none TCCACCTCAGTATTACGGCGTTCCATGGGGGGTGTATCCAGCCAACTTATTTCAGCAGCAAGCTGCAGCTGCGGCAAATAACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG|GTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTCTACAG___AATTTACATATCAGACTAAAGATGCTGCTACAGGAACTGCTTCTATAATTGTCAATAATGAAG___GCCAGAATATCATTGTCA PPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQ|VGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18534 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20290652:- chr2:20448452-20551995:- chr2:20490413:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27861546:- chr2:28004246-28113548:- chr2:28084413:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |pfkB_family_carbohydrate_kinase(95%) |PfkB(73%),Phos_pyr_kin(100%) 0 1 21 694 8 ENST00000704930.1 ENST00000453412.1 upstream downstream duplicates(4) AACACAGCCAGTCAGCAAGCAGCATCACAAGCTCAGCCTGGACAGCAACAG___GTTCTCCGTGCTGGAGCAGGTCAGCGTCCTCTTACTCCCAATCAGGGTCAGCAAGGGCAGCAAGCAGAATCACTTGCGGCAGCTGCAGCAGCAAATCCAACATTGGCTTTTGGTCAGGGTCTTGCTACTGGCATGCCAG|GAGATACATCAGGACACAGTGATGAACATTTGTTGAATTAGTGCATG...TATATGACTTCTAGTTACAGTTCTTGCTTGTGGAAGAGGAATGCTGCTGATACTGGGAGTGCAGTGGGCAAGATCTG___TCTTACTTCTCGTTTGCCAAAAACTGGAGAAACCATCCATGGACATAAG[t]TTTTTTATTGGCTTTGGA NTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMP|gdtsghsdehlln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18535 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20350597:- chr2:20448452-20551995:- chr2:20550358:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27848097:- chr2:28004246-28113548:- chr2:28070964:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |pfkB_family_carbohydrate_kinase(80%) |PfkB(61%),Phos_pyr_kin(100%) 0 1 0 983 43 ENST00000361078.7 ENST00000302188.8 upstream downstream none AACGGTCGGTGTCCCCGGCTGAGGCAGCGCGGCCGCAGCAGCCCT|GTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTCTACAG___AATTTACATATCAGACTAAAGATGCTGCTACAGGAACTGCTTCTATAATTGTCAATAATGAAG___GCCAGAATATCATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18536 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20350597:- chr2:20448452-20551995:- chr2:20550358:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27858571:- chr2:28004246-28113548:- chr2:28081438:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |pfkB_family_carbohydrate_kinase(95%) |PfkB(70%),Phos_pyr_kin(100%) 0 1 0 983 51 ENST00000361078.7 ENST00000302188.8 upstream downstream low_entropy(1) GGAGGGGGAGGACCGCCAAGAGCGACGCCGCCGTGTGCCCAACGGTCGGTGTCCCCGGCTGAGGCAGCGCGGCCGCAGCAGCCCT|TCTTACTTCTCGTTTGCCAAAAACTGGAGAAA...CATCCATGGACATAAGTTTTTTATTGGCTTTGGAGGGAAAGGTGCCAACCAGTGTGTCCAAGCTGCTCGGCTTGGAGCAATGACGTCCATGGTGTGTAAG___GTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18540 TJP2::FAM27C ENSG00000119139.21::ENSG00000231527.7 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TJP2 ENSG00000119139.21 protein_coding + + chr9:69121264-69274615:+ chr9:69230232:+ chr9:71736180-71889531:+ chr9:71845148:+ FAM27C ENSG00000231527.7 lncRNA + + chr9:61854148-62096920:+ chr9:61903708:+ chr9:44990300-45233072:+ chr9:45039860:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none PDZ_domain(89%)| PDZ(87%),PDZ_6(100%)| 13 41 54 1710 132 ENST00000647986.1 unknown downstream upstream duplicates(11),mismatches(25),multimappers(15) CCTGAAGATGAAGCAATATATGG___CCCTAATACCAAAATGGTAAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGCAATGATGTCGGGATATTTGTTGCTGGCATTCAAGAAGGGACCTCGGCGGAGCAGGAGGGCCTTCAAGAAGGAGACCAGATTCTGAAG|AACTGCAAGGTCCATGAGGGCAGAGGCAGTGTCTGTTGCTGGGTGAGTGACTGGATTGACCTCAAAGCATGTCTGAAGACTGAAATGGGCCAGGCAAGGAGATGGACACTGGAGGCCTGGATTCTGGGCTCAGTCATACCTCCAAGAACATAACTTTCCCTCGACCCTGGAGTCTTCACAGACCTTCCTTCCACTGTGAGGCACTGGATAATCACTTGAGACCAGACTCAGG PEDEAIYGPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEGTSAEQEGLQEGDQILK|nckvhegrgsvccwvsdwidlkaclktemgqarrwtleawilgsvipprt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18541 ENSG00000285130::FAM27C ENSG00000285130.2::ENSG00000231527.7 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000285130 ENSG00000285130.2 protein_coding + + chr9:69035747-69255187:+ chr9:69230232:+ chr9:71650663-71870103:+ chr9:71845148:+ FAM27C ENSG00000231527.7 lncRNA + + chr9:61854148-62096920:+ chr9:61903708:+ chr9:44990300-45233072:+ chr9:45039860:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none PDZ_domain(89%)| Frataxin_Cyay(100%),PDZ(88%),PDZ_6(100%)| 13 41 54 1710 132 ENST00000642889.1 unknown downstream upstream duplicates(11),mismatches(25),multimappers(15) CCTGAAGATGAAGCAATATATGG___CCCTAATACCAAAATGGTAAGGTTCAAGAAGGGAGACAGCGTGGGCCTCCGGTTGGCTGGTGGCAATGATGTCGGGATATTTGTTGCTGGCATTCAAGAAGGGACCTCGGCGGAGCAGGAGGGCCTTCAAGAAGGAGACCAGATTCTGAAG|AACTGCAAGGTCCATGAGGGCAGAGGCAGTGTCTGTTGCTGGGTGAGTGACTGGATTGACCTCAAAGCATGTCTGAAGACTGAAATGGGCCAGGCAAGGAGATGGACACTGGAGGCCTGGATTCTGGGCTCAGTCATACCTCCAAGAACATAACTTTCCCTCGACCCTGGAGTCTTCACAGACCTTCCTTCCACTGTGAGGCACTGGATAATCACTTGAGACCAGACTCAGG PEDEAIYGPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEGTSAEQEGLQEGDQILK|nckvhegrgsvccwvsdwidlkaclktemgqarrwtleawilgsvipprt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18542 NBN::RIPK2 ENSG00000104320.15::ENSG00000104312.8 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBN ENSG00000104320.15 protein_coding - - chr8:89924515-90003228:- chr8:89958725:- chr8:90936743-91015456:- chr8:90970953:- RIPK2 ENSG00000104312.8 protein_coding + - chr8:89757806-89791064:+ chr8:89764037:- chr8:90770034-90803292:+ chr8:90776265:- chr8:89956219,chr8:89956221 chr8:89769874,chr8:89769874 NA NA chr8:90968447,chr8:90968449 chr8:90782102,chr8:90782102 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none FHA_domain(100%),Second_BRCT_domain_on_Nijmegen_syndrome_breakage_protein(100%)| BRCT(100%),FHA(100%),NIBRIN_BRCT_II(100%),RTT107_BRCT_5(100%)| 71 18 18 584 113 ENST00000697292.1 unknown upstream downstream duplicates(9),mismappers(2),mismatches(1) ACAGACCTTAATTCCTGACTGTCAGAAGAAATGGATTCAGTCAATAATGGATATGCTCCAAAG___GCAAGGTCTTAGACCTATTCCTGAAGCAGAAATTGGATTGGCGGTGATTTTCATGACTACAAAGAATTACTGTGATCCTCAGGGCCATCCCAGTACAG___GATTAAAGACAACAACTCCAGGACCAAGCCTTTCACAAGGCGTGTCAGTTGATGAAAAACTAATGCCAAGCGCCCCAGTGAACACTACAACATACGTAGCTGACACAGAATCAGAGCAAGCAGATACATG|GAGTTAGCAATCCCCCTTGAGGAGGCTGTAGAATTTCCAGCGAGCTGCAAATTTGGGTGCCAGAGTATCTGCTGGGGTGTGGGAAGAAAATGTTAGATTTCTACTTATACT QTLIPDCQKKWIQSIMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDPQGHPSTGLKTTTPGPSLSQGVSVDEKLMPSAPVNTTTYVADTESEQADTw|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nibrin 1 NHL, glioma, medulloblastoma, rhabdomyosarcoma Nijmegen breakage syndrome leukaemia_lymphoma, epithelial, mesenchymal, other TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 18553 ITGAV::ZC3H15 ENSG00000138448.13::ENSG00000065548.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1749 FALSE NA FALSE NA ITGAV ENSG00000138448.13 protein_coding + + chr2:186590010-186680901:+ chr2:186590523:+ chr2:187454737-187545628:+ chr2:187455250:+ ZC3H15 ENSG00000065548.18 protein_coding + + chr2:186486253-186509361:+ chr2:186495233:+ chr2:187350980-187374088:+ chr2:187359960:+ chr2:186600774,chr2:186600772 chr2:186491721,chr2:186491716 NA NA chr2:187465501,chr2:187465499 chr2:187356448,chr2:187356443 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |CCCH-type_zinc_finger(100%),DRG_Family_Regulatory_Proteins__Tma46(100%) |DFRP_C(100%),zf-CCCH(100%),zf-CCCH_2(100%),zf-CCCH_4(100%) 13 23 14 144 1265 ENST00000696906.1 ENST00000337859.11 downstream upstream mismatches(3),multimappers(1) ACCGCTCCCGGCTTGGCGTCCCGCGCGCACTTCGGCGATGGCTTTTCCGCCGCGGCGACGGCTGCGCCTCGGTCCCCGCGGCCTCCCGCTTCTTCTCTCGGGACTCCTGCTACCTCTGTGCCGCGCCTTCAACCTAGACGTGGACAGTCCTGCCGAGTACTCTGGCCCCGAGGGAAGTTACTTCGGCTTCGCCGTGGATTTCTTCGTGCCCAGCGCGTCTTC|GACAAAACTTTCGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACACATCAAGTTAAATTTGGTCAACAAAATCCACGTCAG___GTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAGCTAAATGAGCTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAG___GTGCAGATCCCAAGTCTGTAGTATGTGCATTCTTCAAG MAFPPRRRLRLGPRGLPLLLSGLLLPLCRAFNLDVDSPAEYSGPEGSYFGFAVDFFVPSASs|tklsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE integrin subunit alpha V 2 large intestine carcinoma epithelial frameshift FALSE NA NA NA NA NA NA NA NA NA 18554 MTMR9::CSMD1 ENSG00000104643.10::ENSG00000183117.20 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTMR9 ENSG00000104643.10 protein_coding + + chr8:11284816-11328146:+ chr8:11309688:+ chr8:11142325-11185655:+ chr8:11167197:+ CSMD1 ENSG00000183117.20 protein_coding - + chr8:2935353-4994972:- chr8:4307582:+ chr8:2792875-4852494:- chr8:4165104:+ chr8:11313687,chr8:11313686 chr8:4299097,chr8:4299093 NA NA chr8:11171196,chr8:11171195 chr8:4156619,chr8:4156615 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Myotubularin-like_phosphatase_domain(63%)| Myotub-related(49%)| 2 4 8 843 40 ENST00000221086.8 unknown downstream upstream mismatches(4) TGAACGTGGCTCAGCAAACTAGAGCCAAAGGAGGTGGCTTTGAACAAGAAGCTCATTATCCTCAGTGGAGGCGAATTCATAAGTCCATTGAGAG___GTATCACATTCTTCAGGAGAGCTTAATCAAACTTGTGGAAGCTTGTAATGACCAAACACATAACATGGACCGATGGCTCAGTAAATTGGAGGCCTCTAACTGGCTGACTCACATCAAAGAGATTCTGACAACTGCCTGCCTAGCGGCTCAGTGCATCGACAG|AGTCCAGCCTCTGTACCCACCCAACTTGTGAAATAAGCAAGCTTATCGAATTTTGCATCTCAAGGACGATGGGAAATGGGTTAAAATACAAATTTGTTGGTcACTTTGCAAACGAACAGCACGATGCTCTTGACCATGAGTGGGAATGAATACCTACATGGGCAACCAGAGAGTTTATCAAGGGTGGAATAAGGTCCAGAGTCAGTTTACCTCTCTACACTACAGTCTGAAAgATTATAATATGATGATTTAACTGTGGTGAAACTCAAC NVAQQTRAKGGGFEQEAHYPQWRRIHKSIERYHILQESLIKLVEACNDQTHNMDRWLSKLEASNWLTHIKEILTTACLAAQCIDr|vqplyppnl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18569 NUAK2::LINC00880 ENSG00000163545.11::ENSG00000243629.2 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUAK2 ENSG00000163545.11 protein_coding - - chr1:205302063-205321745:- chr1:205306188:- chr1:205271191-205290873:- chr1:205275316:- LINC00880 ENSG00000243629.2 lncRNA - - chr3:157081667-157128595:- chr3:157083275:- chr3:156799456-156846384:- chr3:156801064:- chr1:205305387 chr3:157094463 NA NA chr1:205274515 chr3:156812252 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_kinase_domain(70%)| Kdo(100%),Kinase-like(72%),PK_Tyr_Ser-Thr(89%),Pkinase(89%),RIO1(100%)| 1 2 0 32 6 ENST00000367157.6 ENST00000659739.1 upstream downstream none GGCAGATCGTCTCTGCCGTGCACTATTGCCATCAG___AACAGAGTTGTCCACCGAGATCTCAAGCTGGAGAACATCCTCTTGGATGCCAATGGGAATATCAAG...AGTTCCTGCAGACATTCTGTGGGAGCCCCCTCTATGCCTCGCCAGAGATTGTCAATGGGAAGCCCTACACAGGCCCAGAG|GGCTCAGGGAGGACTGACAGGACTAGAGTTGACAACCATTCATCCAACAAACATTTACTGCACGAGGAAGAGAGGTGA...ATTTTTTCCAAAAGTCAAGAGTTTGGAAGAACACTAATGTGTTTTTCTTCCAGCCTTTCCTATACAAATGACAACATCATTACCCTCAGCTTTTAAAGTGCAAGTCTGTACAGAGATCCCAGAGTCAAGGAGGGCGCCTGAGTCATTTGAAATAAT FLQTFCGSPLYASPEIVNGKPYTGPE|gsgrtdrtrvdnhssnkhllheeer NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE NUAK family SNF1-like kinase 2 CAMK CAMKL NuaK Q9H093 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18580 TACC1::ADAM3A ENSG00000147526.20::ENSG00000197475.11 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TACC1 ENSG00000147526.20 protein_coding + + chr8:38728186-38853028:+ chr8:38788819:+ chr8:38585704-38710546:+ chr8:38646337:+ ADAM3A ENSG00000197475.11 transcribed_unitary_pseudogene - + chr8:39451045-39522852:- chr8:39504462:+ chr8:39308564-39380371:- chr8:39361981:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 4 0 0 243 5 ENST00000317827.9 unknown downstream upstream mismappers(2) CCGAGACCAAATCCTTGAGTTTCAG___CTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAG|AGTGTCGTTCTCTCGCCCAGTCTGGAGTGCAGTGGCGCGATTTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCAAGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGGGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGAAGGG ETKSLSFSSDSEGNFETPEAETPIRSPFKESCDPSLGLAGPGAKSQ|ecrslaqsgvqwrdfgslqapppgfkpfsclsllsswdyrgppprpanflyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18601 DNAJC24::IMMP1L ENSG00000170946.15::ENSG00000148950.11 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJC24 ENSG00000170946.15 protein_coding + + chr11:31369840-31432835:+ chr11:31370859:+ chr11:31391387-31454382:+ chr11:31392406:+ IMMP1L ENSG00000148950.11 protein_coding - + chr11:31432401-31509645:- chr11:31453417:+ chr11:31453948-31531192:- chr11:31474964:+ chr11:31374608,chr11:31374608 chr11:31449399,chr11:31449396 NA NA chr11:31396155,chr11:31396155 chr11:31470946,chr11:31470943 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none DnaJ_domain(39%)| DnaJ(0%)| 2 1 1 158 12 ENST00000465995.6 unknown downstream upstream none CCGACAGCAGGCGAGGAGTGGGTAGCAGCGCCTATGTGAAGTTAG___CTAATCTGAGAAGGCCCACTTCTGGTTCCATGGATGATGGCGGTTGAGCAGATGCCAAAAAAGGATTGGTACAGCATCCTGGGAGCAGACCCATCTGCAAATATATCAGACCTAAAACAAAAATATCAAAAACTCATATTAATG|CTCAATCAAGATATGAATAGCAGGATCTTCATCTCATAAACAACAATGATTTTTCTTAGAGGATGCAGAG___CTGAAGGAGCTACTCAGAAGaCTGATGTGGGAGGAGCAcCTGAG MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILM|lnqdmnsrifis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18610 KIAA1217::CDC42BPA ENSG00000120549.19::ENSG00000143776.20 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KIAA1217 ENSG00000120549.19 protein_coding + + chr10:23694746-24547848:+ chr10:24239337:+ chr10:23983675-24836777:+ chr10:24528266:+ CDC42BPA ENSG00000143776.20 protein_coding - - chr1:226989865-227318492:- chr1:227005111:- chr1:227177566-227506193:- chr1:227192812:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none none none 0 1 1 35 97 ENST00000438429.5 ENST00000366766.8 downstream downstream duplicates(1) GAAGACCCTGGAGTCCGTTCCAGACAAAAACTTCCAGAAGAATTAGATTTTCTGCTTTAACTGCCGCCTCACCTGTGGAGCTCTGGGTACAG|AACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAA___TTCACCTGAGGAATGAGACCCGCTCCTGTCAGCAGTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MRCK alpha AGC DMPK GEK Q5VT25 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18631 PCGF2::PIP4K2B ENSG00000277258.5::ENSG00000276293.5 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1752 FALSE NA FALSE NA PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38738353:- chr17:36890151-36906070:- chr17:36894606:- PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38786920:- chr17:36921944-36956379:- chr17:36943173:- chr17:38738172,chr17:38738174,chr17:38738180 chr17:38796446,chr17:38796445,chr17:38796445 NA NA chr17:36894425,chr17:36894427,chr17:36894433 chr17:36952699,chr17:36952698,chr17:36952698 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(44%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|Phosphatidylinositol-4-phosphate_5-Kinase(100%) RAWUL(3%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_2(100%),zf-RING_UBOX(100%)|PIP5K(100%) 13 29 48 428 348 ENST00000616199.4 ENST00000619039.5 upstream downstream duplicates(17),mismatches(14) GGGGGCTCTGAGTGATGATGAGATTGTCAGCCTCTCCATCGAATTCTACGAAGGTGCCAG___GGACCGGGAtGAGAAGAAGGGCCCCCTGGAGAATGGGGATGGGGACAAAGAGAAA___ACAGGGGTGCGCTTCCTGCGATGCCCAGCAGCCATGACCGTCATGCATCTTGCCAAGTTTCTCCGCAACAAGATGGATGTGCCCAGCAAGTACAAG|ATCAATGAGCTGAGCAATGTTCCTGTTCCTGTCATGCTAATGCCAGATGACTTCAAAGCCTACAGCAAGATCAAGGTGGACAATCATCTCTTCAATAA___GGAGAACCTGCCCAGCCGCTTTAAGTTTAAGGAGTATTGCCCCATGGTGTTCCGAAACCTTCGGGAGAGGTTTGGAATTGATGATCAGGATTACCAG___AATTCAGTGACGCGCAGCGCCCCCATCAACAGTGACAGC GALSDDEIVSLSIEFYEGARDRDEKKGPLENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPSKYK|INELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18632 AP2B1::LINC02693 ENSG00000006125.18::ENSG00000212719.15 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AP2B1 ENSG00000006125.18 protein_coding + + chr17:35578046-35726413:+ chr17:35657791:+ chr17:33905065-34053432:+ chr17:33984810:+ LINC02693 ENSG00000212719.15 lncRNA - + chr17:21428263-21574517:- chr17:21472837:+ chr17:21331575-21477781:- chr17:21376149:+ chr17:35658906,chr17:35658904,chr17:35658907 chr17:21469694,chr17:21469694,chr17:21469692 NA NA chr17:33985925,chr17:33985923,chr17:33985926 chr17:21373006,chr17:21373006,chr17:21373004 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Adaptin_N_terminal_region(100%)| Adaptin_N(100%),Cnd1(100%),Cnd3(100%),HEAT(100%),HEAT_2(100%)| 16 8 27 1181 49 ENST00000621914.4 unknown downstream upstream duplicates(9),mismatches(4) CCTTCGAGACCGGGGCTATATTTATTGGCGCCTTCTCTCAACTGACCCTGTTACAGCTAAAGAAGTAGTCTTGTCTGAGAAGCCACTGATCTCTGAGGAGAC...CTAATCTGCCACATTGGTTCTTTGGCCTCTGTGTATCATAAGCCTCCCAATGCTTTTGTGGAAGGAAGTCATGGAATTCATCGTAAACACTTGCCAATTCATCATGGGAG___CACTGATGCAGGTGACAGCCCTGTTGGCACTACCACTGCAACGAACCTGGAACAGCCTCAGGTTATCCCCTCTCAAGGTGATCTTCTAGGGGATCTTTTAAACCTTGACCTCGGTCCCCCAGTCAATGTGCCACAGGTGTCCTCCATGCAGATGGGAGCAGTGGATCTCCTAGGAGGAGGACTAGATAGTCTG|GGCCACATCTTGCTGCTTTGGAGAGGACTCCGTGTGAGCCAATGGTCCTGAGCTTGGAGCAGGATGGAATTACTAGAGAATCCTTTGCATGGCCACCTTGGAGACAGA___AGATGAGGTCTTGCTATGTTGTGCAGGCTGGTCTCAGTCCCCTGGTCTCAAGAGATCCTCCTGCCTTTGCCTCCCCAAGTTTTGGGATTACAGGCATCAGCCACCATGCCCATCCTGAAATGAAATTCTAA LICHIGSLASVYHKPPNAFVEGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQGDLLGDLLNLDLGPPVNVPQVSSMQMGAVDLLGGGLDSL|ghilllwrglrvsqws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18633 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1753 TRUE 3216 TRUE 1210 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59910316,chr17:59910313 chr17:59831456,chr17:59831450 NA NA chr17:57987677,chr17:57987674 chr17:57908817,chr17:57908811 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 0 15 27 149 1884 ENST00000225577.9 ENST00000710770.1 downstream upstream duplicates(14),mismatches(4) CCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18634 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1754 TRUE 3216 TRUE 1210 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893924:+ chr17:57970407-58027935:+ chr17:57971285:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59910316,chr17:59910313 chr17:59831456,chr17:59831450 NA NA chr17:57987677,chr17:57987674 chr17:57908817,chr17:57908811 NA NA sense sense unknown UTR/splice-site CDS/splice-site duplication high none none none 3 1 32 16 1884 ENST00000393021.7 ENST00000262291.9 downstream upstream duplicates(8),mismatches(1) CGGGTCCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GAAGCGCTCAGCTGTTAGAAGTGACAGCTGAAAACTTCTGTCGGGAGTAGCACTGCCGCTGCTGTTACAGCCACCAGGAGTTTTATTTCGGGAGCAAGGGGGCTCTGCTGCATCTTCCAATCTTCCAGG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18635 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3216 TRUE 1210 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59834012:+ chr17:57784553-57919616:+ chr17:57911373:+ chr17:59910316,chr17:59910313 chr17:59831456,chr17:59831450 NA NA chr17:57987677,chr17:57987674 chr17:57908817,chr17:57908811 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none none 0 0 0 149 16 ENST00000225577.9 ENST00000591877.2 downstream upstream mismatches(1) ACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|GCTGGAGGACAATGGCGC GFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|aggqw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18636 EP400::PGAM5 ENSG00000183495.15::ENSG00000247077.8 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1755 TRUE 3217 TRUE 1211 EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132011634:+ chr12:132434487-132565005:+ chr12:132496179:+ PGAM5 ENSG00000247077.8 protein_coding + + chr12:132710819-132722734:+ chr12:132714858:+ chr12:133287405-133299320:+ chr12:133291444:+ chr12:132012669,chr12:132012670 chr12:132712366,chr12:132712364 NA NA chr12:132497214,chr12:132497215 chr12:133288952,chr12:133288950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none E1A-binding_protein_p400__N-terminal(100%),HSA_domain(100%),SNF2-related_domain(29%)|Histidine_phosphatase_superfamily_(branch_1)(100%) EP400_N(100%),HSA(100%),SNF2-rel_dom(44%)|His_Phos_1(100%) 4 8 15 216 264 ENST00000389561.7 ENST00000498926.7 downstream upstream duplicates(9),mismappers(2),mismatches(3) TCGGGAAGCCAAACGCCAAGGACATTGCGGACGTCACTGCGGTGGCTGAAGCCATCCTGCCGAAGGGCAGTGaTCGGGTCACAACCTCG___GTCAAGTTTAATGCTaCATCTTTGTTGTATGGGGCTCTCAGAGATTATCAGAAGATTGGCCTGGACTGGCTGGCCAAACTTTACAGGAAGAATCTCAATGGCATATTGGCAGATGAAGCTGGGCTGGGTAAAACAGTGCAGATCATTGCTTTTTTTGCCCACCTAGCTTGTAACGAAG___GTAATTGGGGCCCCCATCTTGTTGTTGTGAGAAGTTGTAACATACTCAAGTGGGAGCTTGAATTGAAACGTTGGTGTCCCGGACTCAAAATCCTCTCATATATTGGCAGCCACAGAGAACTCAAAGCAAAGAGACAG|GCGAGAACCACTGTCTCTGATCAACGTGCGGAAGAGGAACGTGGAATCTGGGGAAGAAGAGCTGGCGTCCAAGCTGGACCACTACAAAGCCAAGGCCACGCGGCACATCTTCCTCATCAGGCATTCCCAGTACCACGTGGATGGCTCCCTGGAGAAGGACCGCACTCTGACCCCGCTGG___GTCGGGAGCAGGCTGAACTCACTGGGCTCCGCCTGGCAAGCTTGGGGTTGAAGTTTAATAAAATCGTCCATTCGTCTATGACGCGCGCCA GKPNAKDIADVTAVAEAILPKGSdRVTTSVKFNAtSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQ|arttvsdqraeeergiwgrragvqagplqsqghaahlphqafpvprgwlpgegphsdpagsgag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18637 EP400::PGAM5 ENSG00000183495.15::ENSG00000247077.8 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3217 TRUE 1211 EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132006877:+ chr12:132434487-132565005:+ chr12:132491422:+ PGAM5 ENSG00000247077.8 protein_coding + + chr12:132710819-132722734:+ chr12:132714858:+ chr12:133287405-133299320:+ chr12:133291444:+ chr12:132012669,chr12:132012670 chr12:132712366,chr12:132712364 NA NA chr12:132497214,chr12:132497215 chr12:133288952,chr12:133288950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none E1A-binding_protein_p400__N-terminal(100%),HSA_domain(100%),SNF2-related_domain(12%)|Histidine_phosphatase_superfamily_(branch_1)(100%) EP400_N(100%),HSA(100%),SNF2-rel_dom(0%)|His_Phos_1(100%) 3 2 9 182 264 ENST00000389561.7 ENST00000498926.7 downstream upstream duplicates(1) GGAAGCCAAACGCCAAGGACATTGCGGACGTCACTGCGGTGGCTGAAGCCATCCTGCCGAAGGGCAGTGCTCGGGTCACAACCTCG___GTCAAGTTTAATGCTCCATCTTTGTTGTATGGGGCTCTCAGAGATTATCAGAAGATTGGCCTGGACTGGCTGGCCAAACTTTACAGGAAGAATCTCAATGGCATATTGGCAGATGAAGCTGGGCTGGGTAAAACAGTGCAGATCATTGCTTTTTTTGCCCACCTAGCTTGTAACGAAG|GCGAGAACCACTGTCTCTGATCAACGTGCGGAAGAGGAACGTGGAATCTGGGGAAGAAGAGCTGGCGTCCAAGCTGGACCACTACAAAGCCAAGGCCACGCGGCACATCTTCCTCATCAGGCATTCCCAGTACCACGTGGATGGCTCCCTGGAGAAGGACCGCACTCTGACCCCGCTGG___GTCGGGAGCAGGC KPNAKDIADVTAVAEAILPKGSARVTTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNE|genhcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18638 MIGA2::TOR1A ENSG00000148343.19::ENSG00000136827.12 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIGA2 ENSG00000148343.19 protein_coding + + chr9:129036621-129072082:+ chr9:129042514:+ chr9:131798900-131834361:+ chr9:131804793:+ TOR1A ENSG00000136827.12 protein_coding - + chr9:129812942-129824244:- chr9:129821360:+ chr9:132575221-132586523:- chr9:132583639:+ chr9:129042836,chr9:129042835 chr9:129819242,chr9:129819238 NA NA chr9:131805115,chr9:131805114 chr9:132581521,chr9:132581517 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Mitoguardin(13%)| DUF3824(100%),Miga(6%)| 4 6 14 129 35 ENST00000684074.1 unknown downstream upstream duplicates(7),mismatches(3) TCCCGG___CTCTGTGGAGGGGCCCTCTGGTATGTGTGTCCCTGTCCTTCTGGGGCGTGGATGGTGCCTGGGACCCAGCTGGCAACCAGTTGAAGACGTTCTCCT...CCGAGATCCCCGTGTTCCTGTACACGACGTTTGGGCAG___TCTGCATTCTCCCAGCTACGGTTGACGCCAGGCCTGCGGAAAGTCCTCTTTGCCACGGCCCTGGGGACTGTGGCCCTGGCCCTGGCTGCCCACCAGCTGAAGAGGCGACGGAGGAGGAAGAAGCAGGTTGGTCCCGAGATGGGAGGGGAGCAGCTGGGCACGGTGCCCCTCCCTATCCTCTTGGCCAGGAAGGTCCCTTCAGTGAAGAAAG|GTCTGCTACAAGGATCTAAAAGGCAACAGTTAACATTTATTTGTAACATGCACCAGGTACATGTTATGCACTTGACAGACAGAGCTCCCTGGATTGTTACAAGCAACACTTTGTAAGTCAGAATCTGAGTCTCAGGTCAGGCAACTTTCCTAAGACTACGGAGCTGGGAGAGTGTTAGGACTCAAATCCAGATGTGTCTGCTGCCAAAGCCCAAGCTGCTCATCAGTGAGTTCAACCATAA EIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQLKRRRRRKKQVGPEMGGEQLGTVPLPILLARKVPSVKK|gllqgskrqqltficnmhqvhvmhltdrapwivtsntl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18639 SERPINF1::ZNF385C ENSG00000132386.11::ENSG00000187595.18 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3218 TRUE 1212 SERPINF1 ENSG00000132386.11 protein_coding + + chr17:1762029-1777565:+ chr17:1771184:+ chr17:1665323-1680859:+ chr17:1674478:+ ZNF385C ENSG00000187595.18 protein_coding - - chr17:42025576-42098479:- chr17:42080858:- chr17:40177594-40250497:- chr17:40232876:- chr17:1771560,chr17:1771561,chr17:1771556 chr17:42084387,chr17:42084386,chr17:42084386 NA NA chr17:1674854,chr17:1674855,chr17:1674850 chr17:40236405,chr17:40236404,chr17:40236404 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Serpin_(serine_protease_inhibitor)(25%)|Zinc-finger_of_C2H2_type(100%) Serpin(16%)|zf-C2H2_jaz(100%),zf-met(100%) 5 4 13 23 16 ENST00000254722.9 unknown downstream downstream duplicates(2) AGCGGCTGTCTCCAACTTCGGCTATGACCTGTACCGGGTGCGATCCAGCAtGAGCCCCACGACCAACGTGCTCCTGTCTCCTCTCAGTGTGGCCACGGCCCTCTCGGCCCTCTCGCTGG___GAGCGGAGCAGCGAACAGAATCCATCATTCACCGGGCTCTCTACTATGACTTGATCAGCAGCCCAGACATCCATGGTACCTATAAGGAGCTCCTTGACACGGTCACTGCCCCCCAGAAGAACCTCAAGAGTGCCTCCCGGATCGTCTTTGAGAAGA|CCAAGGCCTCTGAGTGGCCCTGCTGTGGGAAGCTGCTTGGAAGCTGCACCAGTGGGCCTGGGGGGCACAGGACATGTTGACACAGCCTGTCCTCAGGGCGTTTCTTGGAACCTCTCAGCTGGTTTTGAAAGGACTCCTTCTTCATGGCCTGCAACGGCTTTGTGCCTCCTCCCACCGGACCGATTTGAGAGGAGGACTTTGATGTGGTCAGCAGCTGCTCCCTGGCCAGCAAGGTGGACCATGGATACCCCACCATCTCCCTCAGCCAATGGACTTGGAGGTTCTCCC AAVSNFGYDLYRVRSSmSPTTNVLLSPLSVATALSALSLGAEQRTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEK|tkasewpccgkllgsctsgpgghrtc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18640 SERPINF1::ZNF385C ENSG00000132386.11::ENSG00000187595.18 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3218 TRUE 1212 SERPINF1 ENSG00000132386.11 protein_coding + + chr17:1762029-1777565:+ chr17:1771184:+ chr17:1665323-1680859:+ chr17:1674478:+ ZNF385C ENSG00000187595.18 protein_coding - - chr17:42025576-42098479:- chr17:42063058:- chr17:40177594-40250497:- chr17:40215076:- chr17:1771560,chr17:1771561,chr17:1771556 chr17:42084387,chr17:42084386,chr17:42084386 NA NA chr17:1674854,chr17:1674855,chr17:1674850 chr17:40236405,chr17:40236404,chr17:40236404 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site inversion high none Serpin_(serine_protease_inhibitor)(25%)|Zinc-finger_of_C2H2_type(100%) Serpin(16%)|zf-C2H2_jaz(100%),zf-met(100%) 0 1 2 23 3 ENST00000254722.9 ENST00000436535.5 downstream downstream duplicates(1) GGGCTCTCTACTATGACTTGATCAGCAGCCCAGACATCCATGGTACCTATAAGGAGCTCCTTGACACGGTCACTGCCCCCCAGAAGAACCTCAAGAGTGCCTCCCGGATCGTCTTTGAGAAGA|ATATGAAGCGGCCACTGAGCCCAC...GCCTCCCTCGGCCCCCAGAACCACCTAAGCCCAAGCGAGAAAGAAAGCGGCCATCGTACACGCTCTGTGATGTCTGCAACATCCAGCTGAACTCGGCGGCCCAGGCCCAGGTGCACTGTGGGGGGCGGGCCCACCAGAGGCGGCTTCGGCAGCTCAGCTTGGGGAAGAGCCCCTCAGGGCCAG___TCTCCCACCG ALYYDLISSPDIHGTYKELLDTVTAPQKNLKSASRIVFEK|nMKRPLSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18641 EHHADH::PEX5L ENSG00000113790.11::ENSG00000114757.19 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3219 TRUE 1213 EHHADH ENSG00000113790.11 protein_coding - - chr3:185190624-185281990:- chr3:185226828:- chr3:184908412-184999778:- chr3:184944616:- PEX5L ENSG00000114757.19 protein_coding - - chr3:179794958-180037053:- chr3:179802032:- chr3:179512746-179754841:- chr3:179519820:- chr3:185220549 chr3:179807081 NA NA chr3:184938337 chr3:179524869 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none Enoyl-CoA_hydratase/isomerase(78%)|Tetratricopeptide_repeat(12%) ECH_1(55%),ECH_2(55%)|TPR_8(0%) 1 0 8 7 17 ENST00000475987.1 ENST00000467460.6 upstream downstream duplicates(4),mismatches(1) CCAGAAGTTACACTGGGACTTCTCCCTGGTGCAAGAGGAACCCAGCTTCTCCCCAGACTCACTGGAGTTCCTGCTGCACTTGACTTAATTACCTCAG___CTTTCAAAGTGAGATGACTCTCAGATTCATT|AGAAGCGGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAATCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAGGCGGCTAATCTTGGTGACCTGGATGTCCTCTTAAGAaCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5588 chr3:185253210-185253272:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18642 EHHADH::PEX5L ENSG00000113790.11::ENSG00000114757.19 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3219 TRUE 1213 EHHADH ENSG00000113790.11 protein_coding - - chr3:185190624-185281990:- chr3:185229432:- chr3:184908412-184999778:- chr3:184947220:- PEX5L ENSG00000114757.19 protein_coding - - chr3:179794958-180037053:- chr3:179802032:- chr3:179512746-179754841:- chr3:179519820:- chr3:185220549 chr3:179807081 NA NA chr3:184938337 chr3:179524869 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Enoyl-CoA_hydratase/isomerase(78%)|Tetratricopeptide_repeat(12%) ECH_1(49%),ECH_2(49%)|TPR_8(0%) 1 1 7 47 17 ENST00000231887.8 ENST00000467460.6 upstream downstream duplicates(4) CATTTGGCCTTACACTGGGACATGTAGTAGATGAAATACAGAGAAATGAGAAGCCCGTGGTGGCAGCAATCCAAGGCATGGCTTTCGGAGGGGGACTAGAGCTGGCCCTGGGCTGTCACTATAGGATTGCCCACGCAGAG___GCTCAAGTTGGCTTACCAGAAGTTACACTGGGACTTCTCCCTGGTGCAAGAGGAACCCAGCTTCTCCCCAGACTCACTGGAGTTCCTGCTGCACTTGACTTAATTACCTCAG|AGAAGCGGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAATCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAGGCGGCTAATCTTGGTGACCTGGATGTCCTCTTAAGAGCTTTCAACTTGGATCCTTGAAGAAAG FGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITS|ekrsaifslpsvckeragisskflilqslgisglpselrsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5588 chr3:185253210-185253272:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18643 EHHADH::PEX5L ENSG00000113790.11::ENSG00000114757.19 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3219 TRUE 1213 EHHADH ENSG00000113790.11 protein_coding - - chr3:185190624-185281990:- chr3:185235290:- chr3:184908412-184999778:- chr3:184953078:- PEX5L ENSG00000114757.19 protein_coding - - chr3:179794958-180037053:- chr3:179802032:- chr3:179512746-179754841:- chr3:179519820:- chr3:185220549 chr3:179807081 NA NA chr3:184938337 chr3:179524869 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Enoyl-CoA_hydratase/isomerase(59%)|Tetratricopeptide_repeat(12%) ECH_1(37%),ECH_2(37%)|TPR_8(0%) 1 0 3 60 17 ENST00000231887.8 ENST00000467460.6 upstream downstream duplicates(1) ATAGAGGAAACATGGCCGAGTATACGCGGCTGCACAACGCCTTGGCGCTAATCCGCCTCCGAAACCCGCCGGTCAACGCGATCAG___TACGACTTTACTCCGT...GCCTTACACTGGGACATGTAGTAGATGAAATACAGAGAAATGAGAAGCCCGTGGTGGCAGCAATCCAAGGCATGGCTTTCGGAGGGGGACTAGAGCTGGCCCTGGGCTGTCACTATAGGATTGCCCACGCAGAG|AGAAGCGGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAATCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAG LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAE|rsgqqfshcpqfakkeqesaasssscnlweylgcpqncalsdgptrtlp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5588 chr3:185253210-185253272:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18644 B3GNTL1::SERPINF1 ENSG00000175711.9::ENSG00000132386.11 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3220 TRUE 1214 B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82956186:- chr17:80900025-81009685:- chr17:80914062:- SERPINF1 ENSG00000132386.11 protein_coding + + chr17:1762029-1777565:+ chr17:1766903:+ chr17:1665323-1680859:+ chr17:1670197:+ chr17:82953014 chr17:1764869 NA NA chr17:80910890 chr17:1668163 NA NA sense sense stop-codon intron 5'UTR/splice-site inversion high none Glycosyl_transferase_family_2(100%)|Serpin_(serine_protease_inhibitor)(100%) Glyco_tranf_2_3(100%),Glycos_transf_2(100%)|Serpin(100%) 1 1 7 21 5 ENST00000320865.4 ENST00000254722.9 upstream upstream duplicates(4),mismatches(4) CTCAG___GAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTG___AAACTTGCAAAGCACGAGGCCCTGCGGTGCCATGTCTGAGGGGCCAAGGCCAGGACCTCCAGCTCCCGTGGACTGAGGTGGCTGCATCGGGGATGTCCTCAGCCCCTGAGTGTGAACGACCCTTGCCTGGGGTGGGCAGGTGATGGGTGCCTCGGGCTCCAAATGCAGCCTTTTTCCCCAAGCGTGGGGAGTCCAGGCTGGCTGCGGGGGGCTGAG|GCCCCAGGATGCAGGCCCTGGTGCTACTCCTCTGCATTGGAGCCCTCCTCGGGCACAGCAGCTGCCAGAACCCTGCCAGCCCCCCGGAGGAG___GGCTCCCCAGACCCCGACAGCACAGGGGCGCTGGTGGAGGAGGAGGATCCTTTCTTCAAAGTCCCCGTGAACAAGCTGGCAGCGGC...CGGGTGCGATCCAGCAtGAGCCCCACGACCAACGTGCTCCTGTCTCCTCTCAGTGTGGCCACGGCCCTCTCGGCCCTCTCGCTGG___GAGCGGAGCAGCGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18645 B3GNTL1::SERPINF1 ENSG00000175711.9::ENSG00000132386.11 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3220 TRUE 1214 B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82956695:- chr17:80900025-81009685:- chr17:80914571:- SERPINF1 ENSG00000132386.11 protein_coding + + chr17:1762029-1777565:+ chr17:1766903:+ chr17:1665323-1680859:+ chr17:1670197:+ chr17:82953014 chr17:1764869 NA NA chr17:80910890 chr17:1668163 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Glycosyl_transferase_family_2(100%)|Serpin_(serine_protease_inhibitor)(100%) Glyco_tranf_2_3(100%),Glycos_transf_2(100%)|Serpin(100%) 1 2 5 61 5 ENST00000320865.4 ENST00000254722.9 upstream upstream duplicates(2),mismatches(3) CGTGGACCAGAGTCTCCTGCTGTATCGCCACCACCCACAGGCGGCCACGCACTGCGTCCTCGA___GACGACCATCTGGACCCACCGCGTCCGCTTCCTGGAAG...TCTGTGACGTGGACGAGAACAAGATCAGGAAAGGCTTCTATTGCCACGAGGACTCTCAG___GAAAGACCCAAGCCCCGAATCCCCATCCTGCACTTCCGAGCCGCCCGGCCACCCTTCGTCATCTGCGTGAAGCTG|GCCCCAGGATGCAGGCCCTGGTGCTACTCCTCTGCATTGGAGCCCTCCTCGGGCACAGCAGCTGCCAGAACCCTGCCAGCCCCCCGGAGGAG___GGCTCCCCAGACCCCGACAGCACAGGGGCGCTGGTGGAGGAGGAGGATCCTTTCTTCAAAGTCCCCGTGAACAAGCTGGCAGCGGCTGTCTCCAACTTCGGCTATGACCTGTACCGGGTGCGATCCAGCAtGAGCCCCACGACCAACGTGCgCCTGTCTC CDVDENKIRKGFYCHEDSQERPKPRIPILHFRAARPPFVICVKL|apgcrpwcyssalepssgtaaartlpaprrrapqtptaqgrwwrrrilssksp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18646 SPAG7::B3GNTL1 ENSG00000091640.8::ENSG00000175711.9 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3221 TRUE 1215 SPAG7 ENSG00000091640.8 protein_coding - - chr17:4959226-4967817:- chr17:4967720:- chr17:4862521-4871112:- chr17:4871015:- B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82965746:- chr17:80900025-81009685:- chr17:80923622:- chr17:4965775 chr17:82968466 NA NA chr17:4869070 chr17:80926342 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Glycosyl_transferase_family_2(13%) |Glycos_transf_2(0%) 1 7 1 534 58 ENST00000206020.8 ENST00000320865.4 upstream downstream none CATCGCTGCACCAGCCAGCCTCCGGCCTCTGTCTGCGGGGGCGGGGCGGGGCCTAGGCCAGCTGGAGGCCGCCATGCACCGCGGGCCTGGGATCTGCGCCC...CACCGCCCCCTCTCAGTCACTCCCAAGATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAGCCACCCAGCCTCGGTGACCAGGAGACTCGGCGCAAGGCCCGAG|GTTTTCACCTCAAATGGCCCCACGGTGATCATGCCCACCTGGTTCTGCTCGCGAGCGTGGTTCTCCCACGTGGGCCCCTTTAACGAGGGAGGTCAG___GGCGTCCCGGAGGACCTGCTGTTCTTCTACGAGCACCTCAGGAAGGGCGGCGGCGTCATCCGCGTGGACCAGAGTCTCCTGCTGTATCGCCACCACCCACAGGCGGCCACGCACTGCGTCCTCGA___GACGACCATCTGGACCCACCGCGTCCGCTTCCTGGAAGAGCAGGCCCTGCCCCGCTGGGCGGCCTTCACCATCTGGAACGCTGGCAAGCAGGGGCGCCGGCTGTACCGCAGCTTGACTGCCGGCAGCCAGCGCAAG___GTGGTGGCATTCTGTGACGTGGACGAGAACAAGAT MADLLGSILSSMEKPPSLGDQETRRKAR|gfhlkwphgdhahlvllasvvlprgpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18648 SPAG7::B3GNTL1 ENSG00000091640.8::ENSG00000175711.9 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3221 TRUE 1215 SPAG7 ENSG00000091640.8 protein_coding - - chr17:4959226-4967817:- chr17:4967720:- chr17:4862521-4871112:- chr17:4871015:- B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82961181:- chr17:80900025-81009685:- chr17:80919057:- chr17:4965775 chr17:82968466 NA NA chr17:4869070 chr17:80926342 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none none 0 3 1 534 60 ENST00000206020.8 ENST00000320865.4 upstream downstream none CACCGCCCCCTCTCAGTCACTCCCAAGATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAGAAGCCACCCAGCCTCGGTGACCAGGAGACTCGGCGCAAGGCCCGAG|GGCGTCCCGGAGGACCTGCTGTTCTTCTACGAGCA...GCGTGGACCAGAGTCTCCTGCTGTATCGCCACCACCCACAGGCGGCCACGCACTGCGTCCTCGA___GACGACCATCTGGACCCACCGCGTCCGCTTCCTGGAAG...CCCGCTGGGCGGCCTTCACCATCTGGAACGCTGGCAAGCAGGGGCGCCGGCTGTACCGCAGCTTGACTGCCGGCAGCCAGCGCAAG___GTGGTGGCATTCTG MADLLGSILSSMEKPPSLGDQETRRKAR|grpggpavllr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18651 DOCK2::GABRP ENSG00000134516.20::ENSG00000094755.17 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK2 ENSG00000134516.20 protein_coding + + chr5:169637268-170083382:+ chr5:170057666:+ chr5:169064272-169510386:+ chr5:169484670:+ GABRP ENSG00000094755.17 protein_coding + + chr5:170763350-170814047:+ chr5:170788574:+ chr5:170190354-170241051:+ chr5:170215578:+ chr5:170057985,chr5:170057986 chr5:170774945,chr5:170774943 NA NA chr5:169484989,chr5:169484990 chr5:170201949,chr5:170201947 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site deletion high none C2_domain_in_Dock180_and_Zizimin_proteins(100%),DHR-2__Lobe_A(74%),DOCK_N-terminus(100%),Variant_SH3_domain(100%)|Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%) DHR-2(67%),DOCK-C2(100%),DOCK_N(100%),FAM196(100%),SH3_1(100%),SH3_2(100%)|Neur_chan_LBD(100%),Neur_chan_memb(100%) 0 3 3 39 6 ENST00000520908.7 ENST00000521481.5 downstream upstream duplicates(1),mismatches(1) GTTCCACTACTCCCGGCCCGTGCGCAGGGGGACCGTAGACCCAGAGAATGAGTTTGCT___TCCATGTGGATTGAGAGAACCTCCTTCGTGACTGCATACAAGCTGCCGGGGATCCTGCGCTGGTTTGAGGTGGTGCACATGTCGCAG|GTGATTCCTACTTCAGCCCCTTGGTGTGAGCAGCTTCTCAACATGAACTACAGCCTCCACTTGGCCTTCGTGTGTCTGAGTCTCTTCACTGAGAG___GATGTGCATCCAGGGGAGTCAGTTCAACGTCGAGGTCGGCAGAAGTGACAAGCTTTCCCTGCCTGGCTTTGAGAACCTCACAGCAGGATATAACAAATTTCTCAGGCCCAATTTTGGTG___GAGAACCCGTACAGATAGCGCTGACTCTG FHYSRPVRRGTVDPENEFASMWIERTSFVTAYKLPGILRWFEVVHMSQ|viptsapwceqllnMNYSLHLAFVCLSLFTERMCIQGSQFNVEVGRSDKLSLPGFENLTAGYNKFLRPNFGGEPVQIALT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-378e chr5:170028488-170028566:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18654 ABR::SLC43A2 ENSG00000159842.16::ENSG00000167703.15 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE TRUE 1756 TRUE 3223 TRUE 1216 ABR ENSG00000159842.16 protein_coding - - chr17:1003519-1229738:- chr17:1067077:- chr17:906759-1133032:- chr17:970317:- SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1586051:- chr17:1472562-1532180:- chr17:1489345:- chr17:1059857,chr17:1056799 chr17:1613306,chr17:1588744 NA NA chr17:963097,chr17:960039 chr17:1516600,chr17:1492038 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Bcr-Abl_oncoprotein_oligomerisation_domain(100%),PH_domain(48%),RhoGEF_domain(100%)|Major_Facilitator_Superfamily(9%) Bcr-Abl_Oligo(100%),PH(24%),PH_19(100%),RhoGEF(100%)|MFS_1(0%) 3 3 0 659 217 ENST00000574139.7 ENST00000301335.10 upstream downstream duplicates(1) CGCCCAAGGGGGAG___ACGCGACAGCTGGTGAAGGACGGCTTCCTGGTGGAAGTGTCAGAGAGCTCCCGGAAGCTGCGGCACGTCTTCCTCTTTACAGATGTCCTAC...GCCAAGCTGAAGAAGACCTCTGCAGG___GAAGCACCAGCAGTATGACTGTAAGTGGTACATCCCCCTGGCCGACCTGGTGTTTCCATCCCCCGAGGAaTCTGA...CCCAGGTGCACCCCTTCCCAGACCATGAGCTGGAGGACATGAAGATGAAGATCTCTGCCCTCAAGAGTGAAATCCAGAAGGAG|TTGGCCTCTACACCTCCATCTTCGGCGTGCTCCAGCTGCTGTGCCTGCTGACGGCCCCCGTCATTGGCTA...CTGGAGGCTGAAGGAGTGTGAAGACGCCTCCGAGGAGCCCGAGGAGAAAGACGCCAACCA___AGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAGATCCtGA...CTCCGCTGTCGGGGGCCTGTACGCTGCCGT___GTACCCCTCCACCCAGTTCGGCAGCCTCACGGGACTGCAGTCTCTGATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCCAGGGAGACCCTCTGTGG___GTGAACGTG QVHPFPDHELEDMKMKISALKSEIQKE|lastppssacssccac* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Active breakpoint cluster region-related protein Atypical BCR Q12979 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18655 ABR::SLC43A2 ENSG00000159842.16::ENSG00000167703.15 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3223 TRUE 1216 ABR ENSG00000159842.16 protein_coding - - chr17:1003519-1229738:- chr17:1067077:- chr17:906759-1133032:- chr17:970317:- SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1583336:- chr17:1472562-1532180:- chr17:1486630:- chr17:1059857,chr17:1056799 chr17:1613306,chr17:1588744 NA NA chr17:963097,chr17:960039 chr17:1516600,chr17:1492038 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Bcr-Abl_oncoprotein_oligomerisation_domain(100%),PH_domain(48%),RhoGEF_domain(100%)| Bcr-Abl_Oligo(100%),PH(24%),PH_19(100%),RhoGEF(100%)| 0 1 0 659 226 ENST00000574139.7 ENST00000301335.10 upstream downstream none ATGAGCTGGAGGACATGAAGATGAAGATCTCTGCCCTCAAGAGTGAAATCCAGAAGGAG|AGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAGATCCAGAA...ACTGCAGTCTCTGATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCCAGGGAGACCCTCTGTGG___GTGAACGgGG ELEDMKMKISALKSEIQKE|rreekeeagpadp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Active breakpoint cluster region-related protein Atypical BCR Q12979 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18658 FOCAD::PRH1 ENSG00000188352.13::ENSG00000231887.9 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20885230:+ chr9:20658308-20995954:+ chr9:20885229:+ PRH1 ENSG00000231887.9 protein_coding - - chr12:10824960-11171608:- chr12:11095801:- chr12:10977559-11324207:- chr12:11248400:- chr9:20892815,chr9:20892813 chr12:11096957,chr12:11096959 NA NA chr9:20892814,chr9:20892812 chr12:11249556,chr12:11249558 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Focadhesin/RST1__DUF3730(100%)|Proline-rich_protein(100%) DUF3730(100%)|Pro-rich(100%),TAS2R(89%) 1 2 2 15 7 ENST00000380249.5 unknown downstream downstream duplicates(1),multimappers(1) GGGATATATCACTCTGCATTAAAAGGAGGTGCCCGCTCAGACCAAGGAAAGACTGTAGCAGGAATCCCCAATTTTATATTGAAAATGTATGAAACAAACAA...CTGAAACCTGGCCTTGCAG___GTGGTATGTTATTTTGCTATGATGTTTCCATGTATCAGAGTAAAGATGGAAAACCATTGAACAGACTGATGGCCAGCAGAGGGCGAAGTTTCAAGCAGACTTCACTTGCTCTTGTACATGAG|AGTTGGATTCTCACTCTGTTGTCCACGCTGGAGTTCAGTGGTAGGATCATGGCTTACTGCAGTCTGGAACTCCTGGGCTCAAACCATCCTCCCACCTCAGCCTT___TGTACTAGCCAGGCGATATTCTCATGGTAAATGGAAAGAGGAAGAATCCC LKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHE|swiltllstlefsgrimaycslellgsnhpptsafvlarryshgkwkeees NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-491 chr9:20716105-20716188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18659 SH3GL3::EP300 ENSG00000140600.17::ENSG00000100393.15 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SH3GL3 ENSG00000140600.17 protein_coding + + chr15:83447228-83618743:+ chr15:83447578:+ chr15:84115980-84287495:+ chr15:84116330:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41117187:+ chr22:41488596-41576081:+ chr22:41513191:+ chr15:83479528,chr15:83479529 chr22:41096572,chr22:41096570 NA NA chr15:84148280,chr15:84148281 chr22:41492576,chr22:41492574 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BAR_domain(4%)|Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(100%),Zinc_finger__ZZ_type(100%) BAR(0%)|Bromodomain(100%),Creb_binding(100%),DUF902(100%),HAT_KAT11(100%),KIX(100%),ZZ(100%),zf-TAZ(100%) 0 4 1 12 139 ENST00000427482.7 ENST00000263253.9 downstream upstream duplicates(2) CCGGGCTCCCGCTCCCCGAGCGCGTCGCGGCCGCGTGGCCCAGCCGAGCCTTGAGACCACCCCGCCCCTGCCGGTCGCAGTCGCGATGTCGGTGGCCGGGCTGAAGAAGCAGTTCCACAAAGCCAGCCAG|ATTTTGGCTCTCTATTTGACTTGGAGCACGACTTACCAGATGAATTAATCAACTCTACAGAATTGGGACTAACCAATGGTGGTGATATTAATCAGCTTCAGACAAGTCTTGGCATGGTACAAGATGCAGCTTCTAAACATAAACAGCTGTCAGAATTGCTGCGATCTGGTAGTTCCCCTAACCTCAATATGGGAGTTGGTGGCCCAGGTCAAGTCATGGCCAGCCA...CCTGGATTAGGTTTGATAAATAGCATGGTCAAAAGCCCAATGACACAGGCAGGCTTGACTTCTCCCAACATGGGGATGGGCACTAGTGGACCAAATCAGGG MSVAGLKKQFHKASQ|ilalyltwsttyqmn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 18660 FOCAD::TAS2R14 ENSG00000188352.13::ENSG00000212127.6 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20885230:+ chr9:20658308-20995954:+ chr9:20885229:+ TAS2R14 ENSG00000212127.6 protein_coding - - chr12:10937408-11171573:- chr12:11095801:- chr12:11090007-11324172:- chr12:11248400:- chr9:20892815,chr9:20892813 chr12:11096957,chr12:11096959 NA NA chr9:20892814,chr9:20892812 chr12:11249556,chr12:11249558 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Focadhesin/RST1__DUF3730(100%)|Taste_receptor_protein_(TAS2R)(100%) DUF3730(100%)|Pro-rich(100%),TAS2R(88%) 1 2 2 15 7 ENST00000380249.5 unknown downstream downstream duplicates(1),multimappers(1) GGGATATATCACTCTGCATTAAAAGGAGGTGCCCGCTCAGACCAAGGAAAGACTGTAGCAGGAATCCCCAATTTTATATTGAAAATGTATGAAACAAACAA...CTGAAACCTGGCCTTGCAG___GTGGTATGTTATTTTGCTATGATGTTTCCATGTATCAGAGTAAAGATGGAAAACCATTGAACAGACTGATGGCCAGCAGAGGGCGAAGTTTCAAGCAGACTTCACTTGCTCTTGTACATGAG|AGTTGGATTCTCACTCTGTTGTCCACGCTGGAGTTCAGTGGTAGGATCATGGCTTACTGCAGTCTGGAACTCCTGGGCTCAAACCATCCTCCCACCTCAGCCTT___TGTACTAGCCAGGCGATATTCTCATGGTAAATGGAAAGAGGAAGAATCCC LKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHE|swiltllstlefsgrimaycslellgsnhpptsafvlarryshgkwkeees NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-491 chr9:20716105-20716188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18662 FOCAD::ENSG00000275778 ENSG00000188352.13::ENSG00000275778.3 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20885230:+ chr9:20658308-20995954:+ chr9:20885229:+ ENSG00000275778 ENSG00000275778.3 protein_coding - - chr12:10845849-11171600:- chr12:11095801:- chr12:10998448-11324199:- chr12:11248400:- chr9:20892815,chr9:20892813 chr12:11096957,chr12:11096959 NA NA chr9:20892814,chr9:20892812 chr12:11249556,chr12:11249558 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Focadhesin/RST1__DUF3730(100%)| DUF3730(100%)|Pro-rich(100%),TAS2R(91%) 1 2 2 15 7 ENST00000380249.5 unknown downstream downstream duplicates(1),multimappers(1) GGGATATATCACTCTGCATTAAAAGGAGGTGCCCGCTCAGACCAAGGAAAGACTGTAGCAGGAATCCCCAATTTTATATTGAAAATGTATGAAACAAACAA...CTGAAACCTGGCCTTGCAG___GTGGTATGTTATTTTGCTATGATGTTTCCATGTATCAGAGTAAAGATGGAAAACCATTGAACAGACTGATGGCCAGCAGAGGGCGAAGTTTCAAGCAGACTTCACTTGCTCTTGTACATGAG|AGTTGGATTCTCACTCTGTTGTCCACGCTGGAGTTCAGTGGTAGGATCATGGCTTACTGCAGTCTGGAACTCCTGGGCTCAAACCATCCTCCCACCTCAGCCTT___TGTACTAGCCAGGCGATATTCTCATGGTAAATGGAAAGAGGAAGAATCCC LKPGLAGGMLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHE|swiltllstlefsgrimaycslellgsnhpptsafvlarryshgkwkeees NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-491 chr9:20716105-20716188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18663 EP300::CARMAL ENSG00000100393.15::ENSG00000260123.2 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41131633:+ chr22:41488596-41576081:+ chr22:41527637:+ CARMAL ENSG00000260123.2 lncRNA + + chr15:89041223-89082819:+ chr15:89082491:+ chr15:89584454-89626050:+ chr15:89625722:+ chr22:41134558,chr22:41134555 chr15:89079004,chr15:89078998 NA NA chr22:41530562,chr22:41530559 chr15:89622235,chr15:89622229 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none TAZ_zinc_finger(51%)| zf-TAZ(93%)| 1 2 1 202 6 ENST00000263253.9 ENST00000565938.1 downstream upstream duplicates(1) ATCAACAGC___CAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTAAGCACTGTTAGTCAG...CTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCGACACAACCCCAGGTGCAAGCAAAGAACCAGCAGAATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATGAGCAACATGA|GCCTACCTGGAATGCCATGCTCCCTCACCGCCAATGCTGCCCTACCAAAT...GAAGAAATTGCTGCCTCCTCTGAATAATTATTGCTGACACTGATTGCACTCTGTGCTTATTGCTCAGTCCTTTGAGTTATCTCGTCAATATTTCCCATTTGTCCTATATCCATCCCCACCTAGGAATGAATGGGACTTCATGATTCTGTCTTTCTAGTATTAGATGTCTT SIERAYAALGLPYQVNQMPTQPQVQAKNQQNQQPGQSPQGMRPMSNM|slpgmpcsltanaalp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 18666 USP13::LINC01840 ENSG00000058056.10::ENSG00000230215.1 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP13 ENSG00000058056.10 protein_coding + + chr3:179653032-179804366:+ chr3:179765848:+ chr3:179370820-179522154:+ chr3:179483636:+ LINC01840 ENSG00000230215.1 lncRNA - + chr3:184546714-184556918:- chr3:184554900:+ chr3:184264502-184274706:- chr3:184272688:+ chr3:179769869,chr3:179769869,chr3:179769870 chr3:184553565,chr3:184553542,chr3:184553556 NA NA chr3:179487657,chr3:179487657,chr3:179487658 chr3:184271353,chr3:184271330,chr3:184271344 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none UBA/TS-N_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(92%),Variant_UBP_zinc_finger(100%),Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)| UBA(100%),UCH(70%),zf-UBP(100%),zf-UBP_var(100%)| 0 1 2 149 9 ENST00000680008.1 unknown downstream upstream duplicates(1) CTACGAGCAACG___AATAATAACCTGGAAAGAGCACTGGATTGGATCTTTAGCCACCCTGAGTTTGAAGAAGACAGTGATTTTGTGATTGAGATGGAGAATAATGCCAATGCAAACATTATTTCTGAGGCCAAGCCCGAAGGACCTAGAGTCAAGGATGGATCTGGAA|CTGGTGGCAGGAGGTGCAGCGAAGATTCTGTGTGTAGCAGGAGGGACCCAGACAGGCCCGACAAAAGGCATTCTGAAGGAAGAGGCTGTTAGGCCTGGCCCAGGAGGGGCAGCTTCAGAAACCAGGGTAAAGGAATTGCCTCAT...GCCAGCCACTTCTGGCTGTTCTGGGAAAGAAACCCAGGGGGCGGCCAGGTGTGGTTGTTCAAGCCTGTAATCCCAGCACTTTGCGGGGCCGAG...CGTACGCTCGAGGAACTCTTCCTCCTCTGCAATAAAGCTCCTTACACTCTACAGCGATGACTTAATCCCACGTCCTCCACTGCTAAGCTAGTAACACAAGC LRATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSG|tggrrcsedsvcsrrdpdrpdkrhsegrgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18667 ENSG00000288698::LINC01840 ENSG00000288698.1::ENSG00000230215.1 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288698 ENSG00000288698.1 protein_coding + + chr3:179604807-179784179:+ chr3:179765848:+ chr3:179322595-179501967:+ chr3:179483636:+ LINC01840 ENSG00000230215.1 lncRNA - + chr3:184546714-184556918:- chr3:184554900:+ chr3:184264502-184274706:- chr3:184272688:+ chr3:179769869,chr3:179769869,chr3:179769870 chr3:184553565,chr3:184553542,chr3:184553556 NA NA chr3:179487657,chr3:179487657,chr3:179487658 chr3:184271353,chr3:184271330,chr3:184271344 NA NA sense antisense unknown 3'UTR/splice-site intron deletion/5'-5' high none none NDUF_B5(100%),UBA(100%),UCH(70%),zf-UBP(100%),zf-UBP_var(100%)| 0 1 2 149 9 ENST00000680408.1 unknown downstream upstream duplicates(1) CTACGAGCAACG___AATAATAACCTGGAAAGAGCACTGGATTGGATCTTTAGCCACCCTGAGTTTGAAGAAGACAGTGATTTTGTGATTGAGATGGAGAATAATGCCAATGCAAACATTATTTCTGAGGCCAAGCCCGAAGGACCTAGAGTCAAGGATGGATCTGGAA|CTGGTGGCAGGAGGTGCAGCGAAGATTCTGTGTGTAGCAGGAGGGACCCAGACAGGCCCGACAAAAGGCATTCTGAAGGAAGAGGCTGTTAGGCCTGGCCCAGGAGGGGCAGCTTCAGAAACCAGGGTAAAGGAATTGCCTCAT...GCCAGCCACTTCTGGCTGTTCTGGGAAAGAAACCCAGGGGGCGGCCAGGTGTGGTTGTTCAAGCCTGTAATCCCAGCACTTTGCGGGGCCGAG...CGTACGCTCGAGGAACTCTTCCTCCTCTGCAATAAAGCTCCTTACACTCTACAGCGATGACTTAATCCCACGTCCTCCACTGCTAAGCTAGTAACACAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18673 DMXL2::CYP19A1 ENSG00000104093.14::ENSG00000137869.16 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3227 TRUE 1217 DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51453550:- chr15:51739908-51915030:- chr15:51745747:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51278162:- chr15:51500254-51630798:- chr15:51570359:- chr15:51452946,chr15:51452948 chr15:51304561,chr15:51304561 NA NA chr15:51745143,chr15:51745145 chr15:51596758,chr15:51596758 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(44%)|Cytochrome_P450(100%) Rav1p_C(100%),WD40(92%)|p450(100%) 1 0 13 181 6 ENST00000251076.9 ENST00000405011.6 upstream downstream duplicates(2) CTCAGGACGGCAGTGTACGAATGTTTGAATGGACGCGGCCTCAGCAACTTGTCTGCTTTCGTCAAGCTGGCAATGCAAGAGTTACTAGATTATATTTTAAT...GGTGTTGCGGATGGAGAGGGTTTTCTGAG?ATCTGGCAAGTTAACCAAACTGCATCAAATCCTAAACCTTATATG___AGTTGGCAGTGCCACAGTAAAGCCACAAGTGACTTTGCATTTATTACCTCTTCAAGTCTAGTTGCCACATCTGGACACTCCAATGACAATAG|CAACTGATCTCTTAGCA...TTATAAAAGATGGCACACGAAGAGTGATTGCCAGAAAAGCCACCTGGTTCTTAAACAGCCGCGCATCATTAGCAAAACTCACCATCTTCAAGAGTCCAAAAACTAGAAGTGACCAGCAGACCCAG___GACTCTAAATTGCCCCCTCTGAGGTCAAGGAACACAAGATGGTTTTGGAAATGCTG GVADGEGFL?IWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNs|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18674 DMXL2::CYP19A1 ENSG00000104093.14::ENSG00000137869.16 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3227 TRUE 1217 DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51453550:- chr15:51739908-51915030:- chr15:51745747:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51242950:- chr15:51500254-51630798:- chr15:51535147:- chr15:51452946,chr15:51452948 chr15:51304561,chr15:51304561 NA NA chr15:51745143,chr15:51745145 chr15:51596758,chr15:51596758 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(44%)|Cytochrome_P450(100%) Rav1p_C(100%),WD40(92%)|p450(100%) 4 0 8 181 25 ENST00000251076.9 ENST00000396402.6 upstream downstream duplicates(2),mismatches(1) AAAAGGAATCTACATAATGTTAAGAGAATGACTTCACACCCAGTCCATCAATACT___ATCTTACAGGTGCTCAGGACGGCAGTGTACGAATGTTTGAATGGACGCGGCCTCAGCAACTTGTCTGCTTTCGTCAAGCTGGCAATGCAAGAGTTACTAGATTATATTTTAATTCACAAGGCAACAAG___TGTGGTGTTGCGGATGGAGAGGGTTTTCTGAG?ATCTGGCAAGTTAACCAAACTGCATCAAATCCTAAACCTTATATG___AGTTGGCAGTGCCACAGTAAAGCCACAAGTGACTTTGCATTTATTACCTCTTCAAGTCTAGTTGCCACATCTGGACACTCCAATGACAATAG|GACTCTAAATTGCCCCCTCTGAGGTCAAGGAACACAAGATGGTTTTGGAAATGCTGAACCCGATACATTATAACATCACCAGCATCGTGCCTGAAGCCATGCCTGCTGCCACCATGCCAGTCCTGCTCCTCACTGGCCTTTTTCTCTTGGTGTGGAATTATGAGGGCACATCCTCAATACCAG___GTCCTGGCTACTGCATGGGAATTGGAC...ACTACTtCAACCGGGTgTATGGAGAATTCATGCGtGTCTGGATCTCTGGAGAGtAAACcCTCATTATCAGCAA___GTCCTCAAGTgTGgTCCACAgAggGAAG KRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNARVTRLYFNSQGNKCGVADGEGFL?IWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNr|tlncpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18675 DMXL2::CYP19A1 ENSG00000104093.14::ENSG00000137869.16 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3227 TRUE 1217 DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51453550:- chr15:51739908-51915030:- chr15:51745747:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51255708:- chr15:51500254-51630798:- chr15:51547905:- chr15:51452946,chr15:51452948 chr15:51304561,chr15:51304561 NA NA chr15:51745143,chr15:51745145 chr15:51596758,chr15:51596758 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(44%)|Cytochrome_P450(100%) Rav1p_C(100%),WD40(92%)|p450(100%) 0 1 9 181 5 ENST00000251076.9 ENST00000453807.6 upstream downstream duplicates(1) GGTGTTGCGGATGGAGAGGGTTTTCTGAGgATCTGGCAAGTTAACCAAACTGCATCAAATCCTAAACCTTATATG___AGTTGGCAGTGCCACAGTAAAGCCACAAGTGACTTTGCATTTATTACCTCTTCAAGTCTAGTTGCCACATCTGGACACTCCAATGACAATAG|GACCGCTGATAACAGCTTTCATGTGGAACTTGGGATTAATATCAAGCAAGCCATG...CCTCAGCCACTT___GACTCTAAATTGCCCCCTCTGAGGTCAAGGAACACAAGATGGTTTTGGAAATGCTGAACCCGATACATTATAACATCACCAGCATCGTG GVADGEGFLrIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNr|tadnsfhvelginikqa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18676 DMXL2::CYP19A1 ENSG00000104093.14::ENSG00000137869.16 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE TRUE FALSE NA TRUE 3227 TRUE 1217 DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51453550:- chr15:51739908-51915030:- chr15:51745747:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51255761:- chr15:51500254-51630798:- chr15:51547958:- chr15:51452946,chr15:51452948 chr15:51304561,chr15:51304561 NA NA chr15:51745143,chr15:51745145 chr15:51596758,chr15:51596758 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none RAVE_protein_1_C_terminal(100%),WD_domain__G-beta_repeat(44%)|Cytochrome_P450(100%) Rav1p_C(100%),WD40(92%)|p450(100%) 0 1 9 181 1 ENST00000251076.9 ENST00000439712.6 upstream downstream duplicates(1) GGTGTTGCGGATGGAGAGGGTTTTCTGAGgATCTGGCAAGTTAACCAAACTGCATCAAATCCTAAACCTTATATG___AGTTGGCAGTGCCACAGTAAAGCCACAAGTGACTTTGCATTTATTACCTCTTCAAGTCTAGTTGCCACATCTGGACACTCCAATGACAATAG|CATGTGGAAAAGCTCCCTGAcTTCCCCGCCTGCCCCACCTGCTGATTTCTCAGGACCGCTGATAACAGCTTTCATGTGG...TTTGGAAATGCTGAcCCCGATACATTATAACATCACCAGCATCGTGCCTGAAGCCATGCCTGCTGCCACCATGCCAGTCCTGCTCCTCACTGGCCTTTTTC GVADGEGFLrIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNs|mwkssltsppappadfsgplitafm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18702 DNAAF4-CCPG1::PIGB ENSG00000261771.5::ENSG00000069943.10 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DNAAF4-CCPG1 ENSG00000261771.5 lncRNA - - chr15:55355248-55498360:- chr15:55454290:- chr15:55647446-55790558:- chr15:55746488:- PIGB ENSG00000069943.10 protein_coding + - chr15:55318960-55355648:+ chr15:55320514:- chr15:55611158-55647846:+ chr15:55612712:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron deletion/read-through/5'-5' low none none none 1 0 9 2 9 ENST00000565113.5 unknown upstream downstream duplicates(5) AGAAAATGAACGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAAAGAATATCAAAGAAAAGCTGAGGAGC[a]AAAAAAAAATTCAGAGAGAAGAGAAATTA...TTTGGCATCTAGAAATCTTGCTCCAAAAG___ATGTTTTTCTTTTTTTTTGAGACtGA|aga|CTACTGAAGACGAGGGAGCAAGGGGGACTACTCTAAAAGAAACTGAGCACAATTTCCAAGATGAATACACACTCATAGTCTGGAAAAGAAACCACAAAGGATATTTGAAAACCATGTGATGTGAAACTTCAAGAGACTGCCAGTATTCATCTGGAACAAAACTTGTCTGCACTAAAAAGCAGTTTAATATTCGTAAAGCTATGGTAAACAAGAGCAGATAAATATTTTCTCCAAGAAGATCTGAAAAACAGAACAAAACAGGTAATAGTGGCACAAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18733 GATAD2A::ZNF675 ENSG00000167491.18::ENSG00000197372.10 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19386138:+ chr19:19496635-19619741:+ chr19:19496947:+ ZNF675 ENSG00000197372.10 protein_coding - + chr19:23525631-23687220:- chr19:23549896:+ chr19:23708433-23870022:- chr19:23732698:+ chr19:19429577,chr19:19429574,chr19:19429577,chr19:19429576,chr19:19429578 chr19:23540991,chr19:23540985,chr19:23540988,chr19:23540988,chr19:23540996 NA NA chr19:19540386,chr19:19540383,chr19:19540386,chr19:19540385,chr19:19540387 chr19:23723793,chr19:23723787,chr19:23723790,chr19:23723790,chr19:23723798 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 43 167 79 180 946 ENST00000360315.7 unknown downstream upstream duplicates(17),mismappers(2),mismatches(27),multimappers(1) TCGGTCGTCTGTCCTGTCGCCGCTGCCGCCGCCGCCACAGCGGCCGCCGCGGGCGCCACCTGAGGGAGTCGCCTCCGCGGGACGCCACAAGACCTGACCGGACTGCGCCGCCCGAGGCCGTCGGCCGCCGTCAGCGAGGGCGCCGAGCAACTTCG|ACATGCGTGACATTTGGTGCTGAAGACCCGGGATGGGGGACTCCTTCGGGAGACTGGTCCCCTGTCCTCACCCTCACTCCATGAGGAGATCCACCTACAACCTCGGGTCCTCAGTCCAACCAGCCTAAGGAACATCTCACCAATTTCAAATCAG___ATCTTGGCTTAGTGGCTGAAGACTGATGCTGCCCAATTACCTCGGAAGCCTCCTGGACCATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18737 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1758 TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120980644:- chr12:121379531-121418771:- chr12:121418447:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Rpp14/Pop5_family(55%) |RNase_P_Rpp14(20%) 6 2 7 79 660 ENST00000647473.1 ENST00000357500.5 upstream downstream duplicates(2),mismatches(1) TCTCTCCCGTGCCCCTTCTCCCAGCTGGGTCTGAGCCCCCGCCCCCCTGGCTCCTCCGTTCTGCTTCTCCCAGCTTCTCTGTCCATCTCCCCCAATGGCCTCTCTCTACACTCTCTGCCTCAGCTTCCAGGTCTCTGCTGGTCCCTAGGAAGCACTTTGACCTCTGCTTCCCCTTCAAATGCTGTGGATCAAGCCTCCCCAACCCCACCATCCCACCAAAGGGGGCTGCTGACCGAGAGAGCTCACTCAGCCAG|TTCGATATCTCAATGCCTATACTGGAATAGTGCTACTTCGATGCAGAAAAGAATTCTATCAGCTTGTGTGGTCAGCTCTTCCCTTCATCACATACTTGGAGAACAAAGGACACCGTTACCCATGCTTTTTCAACACATTACATGTGGGAG___GTACAATAAGAACATGTCAGAAGTTCCTAATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18738 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE TRUE 1759 TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120970298:- chr12:121379531-121418771:- chr12:121408101:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none |Rpp14/Pop5_family(55%) |RNase_P_Rpp14(20%) 7 0 11 36 660 ENST00000647473.1 ENST00000357500.5 upstream downstream duplicates(1),mismatches(1) TGAGCCCCCGCCCCCCTGGCTCCTCCGTTCTGCTTCTCCCAGCTTCTCTGTCCATCTCCCCCAATGGCCTCTCTCTACACTCTCTGCCTCAGCTTCCAGGTCTCTGC...ATCAAGCCTCCCCAACCCCACCATCCCACCAAAGGGGGCTGCTGACCGAGAGAGCTCACTCAGCCAG___...CCTGGCTTCAAGCAATCCTCCCACCT...CAG___AGAGCCAGCTGTTAAACACTAGCCAACACCCCATTGATGCTGTTCCTTCTACCTGAAACACCTCGCATTGCCG|TTCGATATCTCAATGCCTATACTGGAATAGTGCTACTTCGATGCAGAAAAGAATTCTATCAGCTTGTGTGGTCAGCTCTTCCCTTCATCACATACTTGGAGAACAAAGGACACCGTTACCCATGCTTTTTCAACACATTACATGTGGGAG___GTACAATAAGAACATGTCAGAAGTTCCTAATTCAGTACAACAGGAGACAGCTGTTGATCTTGTTGCAGAACTGCACTGATGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18739 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120979614:- chr12:121379531-121418771:- chr12:121417417:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none |Rpp14/Pop5_family(55%) |RNase_P_Rpp14(20%) 0 3 9 15 660 ENST00000646404.1 ENST00000357500.5 upstream downstream duplicates(1) GTTCTCCAGGAGACGGGGAGTCCGCCAGCGGATGGGGATGTAGAACGGGCAGCCTCTAATGGCGCCTGCTGGTGAGGTGGGGTGCCTGTGGCCATACAGGAAAGGGGAGCAGCTCCCACCTCGAGGCTCTGTCTGCCTCAG|TTCGATATCTCAATGCCTATACTGGAATAGTGCTACTTCGATGCAGAAAAGAATTCTATCAGCTTGTGTGGTCAGCTCTTCCCTTCATCACATACTTGGAGAACAAAGGACACCGTTACCCATGCTTTTTCAACACATTACATGTGGGAG___GTACAATAAGAACATGTCAGAAGTTCCTAATTCAGTACAACAGGAGACAGCTGTTGATCTTGTTGCAGAACTGCACTGATGAAG___GAGAGCGGGAAGCTATCCAGAAGTCTGTGACAAGAAGCTGCTTATTAGAGGAGGAGGAGGAGTCAGGTGAGGAGGCTGCAGAAGCAATGGAGTGAACCTCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18740 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120974485:- chr12:121379531-121418771:- chr12:121412288:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none |Rpp14/Pop5_family(55%) |RNase_P_Rpp14(20%) 1 1 9 22 660 ENST00000535301.2 ENST00000357500.5 upstream downstream duplicates(1) CAGGTCTCTGCTGGTCCCTAGGAAGCACTTTGACCTCTGCTTCCCCTTCAAATGCTGTGGATCAAGCCTCCCCAACCCCACCATCCCACCAAAGGGGGCTG...CTAGAACTCCTGGCTTCAAGCAATCCTCCCACCTCAGCATCCCAAGTAGCTGGAACTACAG|TTCGATATCTCAATGCCTATACTGGAATAGTGCTACTTCGATGCAGAAAAGAATTCTATCAGCTTGTGTGGTCAGCTCTTCCCTTCATCACATACTTGGAGAACAAAGGACACCGTTACCCATGCTTTTTCAACACATTACATGTGGGAG___GTACAATAAGAACATGTCAGAAGTTCCTAATTCAGTACAACAGGAGACAGCTGTTGATCTTGTTGCAGAACTGCACTGATGAAG___GAGAGCGGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18743 RAD18::SRGAP3 ENSG00000070950.10::ENSG00000196220.17 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD18 ENSG00000070950.10 protein_coding - - chr3:8775402-8963773:- chr3:8947220:- chr3:8817088-9005457:- chr3:8988904:- SRGAP3 ENSG00000196220.17 protein_coding - - chr3:8980591-9363053:- chr3:9124917:- chr3:9022275-9404737:- chr3:9166601:- chr3:8945966,chr3:8946004,chr3:8945971 chr3:9131341,chr3:9131344,chr3:9131343 NA NA chr3:8987650,chr3:8987688,chr3:8987655 chr3:9173025,chr3:9173028,chr3:9173027 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Zinc_finger__C3HC4_type_(RING_finger)(100%)|Fes/CIP4__and_EFC/F-BAR_homology_domain(100%),RhoGAP_domain(100%),SH3_domain(100%) zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_UBOX(100%)|FCH(100%),RhoGAP(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 4 0 2 85 3 ENST00000264926.7 ENST00000383836.8 upstream downstream none CTGACCCCCAGCATCCTCGaGAGCGACCATGGACTCCCTGGCCGAGTCTCGGTGGCCTCCGGGCCTGGCAGTCATGAAG___ACAATAGATGATTTGCTGCGG...ATTTGCTTCGAGTATTTCAACATTGCAATGATAATACCTCAGTGTTCACATAACT___ACTGCTCTCTCTGTATAAGAAAATTTCTGTCCTATAAAACTCAGTGTCCAACTTGCTGTGTG___ACTGTCACAGAGCCGGATCTGAAAAATAACCGCATATTAGATGAACTGGTAAAAAGCTTGAATTTTGCACG|AGATCCGCACGCAGCTGGTGGAGCAGTTCAAATGTCTGGAGCAGCAATCAGAGTCGCGACTGCAGC...GCTTCAAGACCTCCAGGAGTTTTTCCGCCGGAAAGCTGAGATTGAGCTCGAGTACTCCCGCAGCCTGGAGAAGCTGGCTGAGCGCTTCTCCTCCAAAATCC ICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAr|dphaaggavqmsgaairvata NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SLIT-ROBO Rho GTPase activating protein 3 2 pilocytic astrocytoma other fusion translocation 18758 ASPH::LINC02842 ENSG00000198363.18::ENSG00000254119.5 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASPH ENSG00000198363.18 protein_coding - - chr8:61500556-61714640:- chr8:61633683:- chr8:62413115-62627199:- chr8:62546242:- LINC02842 ENSG00000254119.5 lncRNA + - chr8:61785047-61944180:+ chr8:61875595:- chr8:62697606-62856739:+ chr8:62788154:- chr8:61630094 chr8:61878237 NA NA chr8:62542653 chr8:62790796 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Aspartyl_beta-hydroxylase_N-terminal_region(100%)| Asp-B-Hydro_N(100%)| 1 4 1 2238 9 ENST00000379454.9 unknown upstream downstream duplicates(1) AGATGATGTAACATACCAAGTCTATGAGGAACAAG___CAGTATATGAACCTCTAGAAAATGAAGGGATAGAAATCACAG___AAGTAACTGCTCCCCCTGAGGATAATCCTGTAGAAGATTCACAGGTAATTGTAGAAG___...AGAAGTAAGCATTTTTCCTGTGGAAGAACAGCAGGAAGTACCACCAG|GATTAGAGGCCTTCTAAAAAGAGTTGCTTCGGAGCTCACTGTCTTTCAGCCATGGGAGAATATAGCAGGAAGGAAGCAGTCTTCAAGCAAAGAAAAGTGCCCGTGAAAGAAGAGCTGAACCCTGCTAGAATATTGATCTTGGACTTTCCAGCCTCCAGAACTGTG EVSIFPVEEQQEVPP|gleaf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18759 AGO2::TRAPPC9 ENSG00000123908.12::ENSG00000167632.18 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140635485:- chr8:141530255-141645732:- chr8:141645584:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140024079:- chr8:140739968-141468678:- chr8:141034176:- chr8:140592251,chr8:140592253 chr8:140082875,chr8:140082874 NA NA chr8:141602350,chr8:141602352 chr8:141092974,chr8:141092973 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none none none 0 4 0 20 110 ENST00000220592.10 ENST00000648948.2 upstream downstream duplicates(1) CCTCGGCCCCGGAGCCCCTCGGCGGCGCCACCATGTACTCGGGAGCCGGCCCCG|ACCCTGGAAGCTGTCCTGAATTTCAAATACTCTGGAGGCCCGGGCCACACTGAAGGATATTACAGGAATCTCTCCCTGGGGCTGCATGTAGAAGTCGAGCCGTCTGTATTTTTCACCCGAGTCAGCACCCTCCCAGCAACCAG___TACCCGGCAGTGTCACCTGCTCCTGGAT...TCCTCTTCCTCTACACGGGAGACTTCTTCCTCCACATCCGGTTCCACGAGGACAGCACCAGCAAGGAGCTGCCACCCTCTTGGTTCTGCCTGCCCAGTGTG MYSGAGP|dpgscpefqilwrpgph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18760 LRCH3::KIF27 ENSG00000186001.14::ENSG00000165115.15 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRCH3 ENSG00000186001.14 protein_coding + + chr3:197791226-197888436:+ chr3:197838550:+ chr3:197518097-197615307:+ chr3:197565421:+ KIF27 ENSG00000165115.15 protein_coding - + chr9:83834099-83921465:- chr9:83914452:+ chr9:86449014-86536380:- chr9:86529367:+ NA NA chr3:197838551 chr9:83914453 NA NA chr3:197565422 chr9:86529368 sense antisense unknown intron intron translocation/5'-5' medium none Leucine_rich_repeat(100%)| LRR_6(100%),LRR_8(100%)| 1 1 2 7 5 unknown unknown downstream upstream mismatches(2) CTaTTTCTTGGAGGTAGATGCTATTTCTTGGAgGTAGATGGTAAGTAGTTTTATGTTTGATTTGTAGATATCCTTTTTGGGAAAGTTGTTTTCTTATTTTTCCCTTGATGAATAACCATTTTG|GCATTTAATGAGAGAAGTTTCTTTTTTAAAATTTTTTATTTTTTTATTGTTTCAGCTCATATCTGAACAGCTAGAGAAAAAAGTTTCTGAAAGCCATATATTTTACATTTGTGAAATATG...TAGACAATGATGCATATGTGCACTACTCAAAAGTTTGTTTTTAGTGGAAAAATATAAATACAGTAAACAATCTTAACAGAGGACTTGGCTGTCAATTCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18770 AGO2::ENSG00000289741 ENSG00000123908.12::ENSG00000289741.1 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140635485:- chr8:141530255-141645732:- chr8:141645584:- ENSG00000289741 ENSG00000289741.1 lncRNA - - chr8:140023724-140096538:- chr8:140024079:- chr8:141033821-141106637:- chr8:141034176:- chr8:140592251,chr8:140592253 chr8:140082875,chr8:140082874 NA NA chr8:141602350,chr8:141602352 chr8:141092974,chr8:141092973 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none none none 0 2 0 20 110 ENST00000220592.10 ENST00000698172.1 upstream downstream duplicates(1) CCTCGGCCCCGGAGCCCCTCGGCGGCGCCACCATGTACTCGGGAGCCGGCCCCG|ACCCTGGAAGCTGTCCTGAATTTCAAATACTCTGGAGGCCCGGGCCACACTGAAGGATATTACAGGAATCTCTCCCTGGGGCTGCA MYSGAGP|dpgscpefqilwrpgph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18790 ATF7::MAP3K12 ENSG00000170653.19::ENSG00000139625.13 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATF7 ENSG00000170653.19 protein_coding - - chr12:53507856-53626410:- chr12:53537415:- chr12:53901640-54020194:- chr12:53931199:- MAP3K12 ENSG00000139625.13 protein_coding - - chr12:53479669-53500063:- chr12:53487428:- chr12:53873453-53893847:- chr12:53881212:- chr12:53537156 chr12:53499168 NA NA chr12:53930940 chr12:53892952 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |Protein_kinase_domain(100%) zf-C2H2(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 1 109 133 ENST00000420353.7 ENST00000547488.6 upstream downstream none CTTTGAACATGAATTCAAGAAAGCTGCAGATGAGGATGAGAAAAAG___GCTGCTGCTGGGCCCCTTGACATGTCTCTGCCTTCCACACCAGACATCAAAATCAAAGAAGAAGAGCCAGTGGAGGTAGACTCATCCCCACCTGATAGCCCTGCCTCTAGTCCCTGTTCCCCACCACTGAAGGAGAAG|GGCCCAGTGTTCACCATCATACCAGGGGCCAGAGGCGATGGCTTGCCTCCATGAGACCCGAACACCCTCTCCTTCCTTTGG...TGTGTCTcCCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGACTGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAG...TGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGCTGTGAAGAAGGTGCGAGACCTCAAAGAAACCGAC FEHEFKKAADEDEKKAAAGPLDMSLPSTPDIKIKEEEPVEVDSSPPDSPASSPCSPPLKEK|gpvftiipgargdglpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase 12 TKL MLK LZK Q12852 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18816 SRSF4::OS9 ENSG00000116350.18::ENSG00000135506.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1761 FALSE NA FALSE NA SRSF4 ENSG00000116350.18 protein_coding - - chr1:29147743-29181900:- chr1:29181646:- chr1:29474255-29508412:- chr1:29508158:- OS9 ENSG00000135506.17 protein_coding + + chr12:57693841-57728342:+ chr12:57715760:+ chr12:58087624-58122125:+ chr12:58109543:+ chr1:29178064,chr1:29178117,chr1:29178068 chr12:57715565,chr12:57715330,chr12:57715561 NA NA chr1:29504576,chr1:29504629,chr1:29504580 chr12:58109348,chr12:58109113,chr12:58109344 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(25%)|Glucosidase_II_beta_subunit-like_protein(4%) RRM_1(0%)|Ank(100%),Ank_2(100%),ArfGap(100%),PRKCSH(11%),PRKCSH_1(0%) 182 166 194 625 2945 ENST00000373795.7 ENST00000389142.10 upstream upstream duplicates(57),mismatches(21) CCCGCCCGTTGCCGCCGCCGCCGCTGCCGCCGTGCTCTCGCTTTGCCCGCCGCCGCCTAAGGGGGGCTGGGGCCGGGGCCAGCCATCACTGCCGTTGCCGGGATGCCGCGGGTGTACATCGGCCGCCTGAGCTACCAGGCCCGGGAGCGCGATGTGGAGCGCTTCTTTAAGGGCTACGGGAAGATCCTGGAGGTGGATCTGAAGAACGG|TTCCTCTGTGACGAGGGTGCAGGTATCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCTGACCATTCGCACTCCTCGGCTCTGCCCCCACCCTCTCCTCCGGCCCCCACCCAGTGCTGCACCGCAGGCCATCCTCTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACGTTCAGAGGCAAGCCG___ACTCAAAGCAGTATGGAGATAAAATCATAGAGGAGCTGCAAGATCTAGGCCCC MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNg|ssvtrvqvslgttsiawtspcpalmc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18817 STXBP5::SAMD5 ENSG00000164506.16::ENSG00000203727.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3250 TRUE 1219 STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147353373:+ chr6:147525316-147712146:+ chr6:147674509:+ SAMD5 ENSG00000203727.4 protein_coding + + chr6:147508690-147737547:+ chr6:147630336:+ chr6:147829826-148058683:+ chr6:147951472:+ chr6:147355887,chr6:147355887 chr6:147630193,chr6:147630190 NA NA chr6:147677023,chr6:147677023 chr6:147951329,chr6:147951326 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none LLGL2(100%),WD_domain__G-beta_repeat(100%)| LLGL(100%),WD40(100%)| 62 22 222 753 166 ENST00000706850.1 unknown downstream upstream duplicates(25),low_entropy(12),mismappers(7),mismatches(16) CCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAG___CCGGTCTGTGTGATATTAGTGAAGGGACTGTTGTTCCAGAGGATCGCTGCAAATCTCCAACCTCTG___CAAAGATGTCAAGGAAGTTAAGCTTACCTACTGACCTAAAGCCTGATTTAG|GATTGATGTGAGAGAGACTTGTGACAAGACTGTGGTGTTTGTCAGGCCTCTGAGTCCAAGCCTGCACGTATTTGTCCAGACGGCCTGAAGCAAGTGAAGAATCACAAAATAAGTGAAAATGGCCGGTTCCTGCCTTAACTGATGACATTACCTAGTGGAATTCCTTCTCCTGGCTCATCCTGACTCAAAAGCTCCCCCACTGAGTATCTTGTGACCCCCACCCCTGCCAGCCAGAGAGCAAC RSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSAKMSRKLSLPTDLKPDL|glm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18818 STXBP5::SAMD5 ENSG00000164506.16::ENSG00000203727.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3250 TRUE 1219 STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147334222:+ chr6:147525316-147712146:+ chr6:147655358:+ SAMD5 ENSG00000203727.4 protein_coding + + chr6:147508690-147737547:+ chr6:147737317:+ chr6:147829826-148058683:+ chr6:148058453:+ chr6:147355887,chr6:147355887 chr6:147630193,chr6:147630190 NA NA chr6:147677023,chr6:147677023 chr6:147951329,chr6:147951326 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none LLGL2(100%),WD_domain__G-beta_repeat(100%)| LLGL(100%),WD40(100%)| 1 0 17 809 112 ENST00000706850.1 ENST00000566741.1 downstream upstream mismatches(1) GCTGCTCAACCTGGGCACTATTGAATTATATGGCTCTAATGATCCTTATCGGAGAGAACCCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAG___CCGGTCTGTGTGATATTAGTGAAGGGACTGTTGTTCCAGAGGATCGCTGCAAATCTCCAACCTCTG|GTATTATTATGCCGCTACCTTCAAGAAGTAATTTGCGTGCTGTTTATTGGAGCTGTGAATTTAATCATCTCAATCCCACGCTATTACAGGATGACTATAAGAAGATGTATTGACATTTCTTTGGACACATAATTTTGCCTCCATTGTGTGTTGTTTTGCCAGAATACTGAAGGCAGTGTTTGTATGATGGCACATCCAAATAAAAAGCAG LLNLGTIELYGSNDPYRREPRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTS|giimplpsrsnlravywscefnhlnptllqddykkmy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18819 STXBP5::SAMD5 ENSG00000164506.16::ENSG00000203727.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3250 TRUE 1219 STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147353373:+ chr6:147525316-147712146:+ chr6:147674509:+ SAMD5 ENSG00000203727.4 protein_coding + + chr6:147508690-147737547:+ chr6:147737317:+ chr6:147829826-148058683:+ chr6:148058453:+ chr6:147355887,chr6:147355887 chr6:147630193,chr6:147630190 NA NA chr6:147677023,chr6:147677023 chr6:147951329,chr6:147951326 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none LLGL2(100%),WD_domain__G-beta_repeat(100%)| LLGL(100%),WD40(100%)| 4 2 27 753 112 ENST00000706850.1 ENST00000566741.1 downstream upstream duplicates(3),low_entropy(2),mismatches(1) ACCCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAG___CCGGTCTGTGTGATATTAGTGAAGGGACTGTTGTTCCAGAGGATCGCTGCAAATCTCCAACCTCTG___CAAAGATGTCAAGGAAGTTAAGCTTACCTACTGACCTAAAGCCTGATTTAG|GTATTATTATGCCGCTACCTTCAAGAAGTAATTTGCGTGCTGTTTATTGGAGCTGTGAATTTAATCATCTCAATCCCACGCTATTACAGGATGACTATAAGAAGATGTATTGACATTTCTTTGGACACATAATTTTGCCTCCATTGTGTGTTGTTTTGCCAGAATACTGAAGGCAGTGTTTGTATGATGGCACATCCAAATAAAAA PRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSAKMSRKLSLPTDLKPDL|giimplpsrsnlravywscefnhlnptllqddykkmy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18825 CNTN4::SUMF1 ENSG00000144619.15::ENSG00000144455.14 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2988472:+ chr3:2140497-3099643:+ chr3:3030156:+ SUMF1 ENSG00000144455.14 protein_coding - + chr3:3700814-4467273:- chr3:4163562:+ chr3:3742498-4508957:- chr3:4205246:+ chr3:2992587,chr3:2992586 chr3:4140585,chr3:4140581 NA NA chr3:3034271,chr3:3034270 chr3:4182269,chr3:4182265 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(71%)| I-set(97%),Ig_2(100%),Ig_3(96%),ig(97%)| 19 13 66 72 43 ENST00000418658.6 unknown downstream upstream duplicates(8),mismatches(7),multimappers(3) AGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAAGGAAGGGATATATTAAAAGAAAATGAAAG___AATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTAAATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTAGTGAAAG|GATACTGTCCTTGGACCCACTTTCTCAGACATTTCTGTAAAGGAACAGTCTTCCAGCTCCTTTGTATGAGAGGAAATTGAAGCCTATGAAAG___GAATGTTCCTCCATGGAAAAACTTCCTTATAGTGGCAGGATTAAAAAGG VVIECKPKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVVK|gycpwthflrhfckgtvfqllcmrgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18826 SLC16A7::CCDC60 ENSG00000118596.12::ENSG00000183273.7 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1762 TRUE 3252 TRUE 1220 SLC16A7 ENSG00000118596.12 protein_coding + + chr12:59596029-59789855:+ chr12:59705018:+ chr12:59989810-60183636:+ chr12:60098799:+ CCDC60 ENSG00000183273.7 protein_coding + + chr12:119334712-119541040:+ chr12:119428683:+ chr12:119772517-119978845:+ chr12:119866488:+ chr12:59787683,chr12:59787735 chr12:119339260,chr12:119339260 NA NA chr12:60181464,chr12:60181516 chr12:119777065,chr12:119777065 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Major_Facilitator_Superfamily(12%)|Domain_of_unknown_function_(DUF4698)(100%) MFS_1(0%)|DUF4698(100%) 27 12 58 164 83 ENST00000547379.6 ENST00000536742.5 downstream upstream duplicates(3),mismatches(6) CCTGCGCCAGAGACCAGATAAA___GAGTCAATCTTAAGATGTGATACTTTCCTGTGAAACCTGAAACAAGGTGATCTGGGGAACCAAAGACTCTGGGACTCTTGGTGCCAACAGAGTTACTCT___GTTACTTGAATTTCCACTAGAGGAGCAGAAATGCCACCAATGCCAAGTGCCCCACCTGTGCATCCACCTCCAGATGGAGGATGGGGTTGGATTGTGGTTGGAGCAGCTTTTATCTCCATTGGATTTTCCTATGCATTCCCCAAAGCTGTCACCGTATTCTTCAAAGAAATTCAGCAAATATTCCACACTACCTACAGTGAAATAGCATGGATTTCATCCATTATGCTGGCTGTTATGTACGCAGGAG|GTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCG___CCTCTCCCACTGCCGGACACAAAGGAGAATGGGGAAAAGGCCAAACAGAGAAGCCACAAGCAAGCAAGAAAGAAACGACAATGAGATG...AGGAATCAGGATTCCCCTTCAGAAGGAAAC MPPMPSAPPVHPPPDGGWGWIVVGAAFISIGFSYAFPKAVTVFFKEIQQIFHTTYSEIAWISSIMLAVMYAG|gprqaneehqvygqgnnkpqkgpytkpplplpdtkengekakqrshkqarkkrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18827 SLC16A7::CCDC60 ENSG00000118596.12::ENSG00000183273.7 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3252 TRUE 1220 SLC16A7 ENSG00000118596.12 protein_coding + + chr12:59596029-59789855:+ chr12:59655250:+ chr12:59989810-60183636:+ chr12:60049031:+ CCDC60 ENSG00000183273.7 protein_coding + + chr12:119334712-119541040:+ chr12:119428683:+ chr12:119772517-119978845:+ chr12:119866488:+ chr12:59787683,chr12:59787735 chr12:119339260,chr12:119339260 NA NA chr12:60181464,chr12:60181516 chr12:119777065,chr12:119777065 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Domain_of_unknown_function_(DUF4698)(100%) |DUF4698(100%) 0 1 20 271 83 ENST00000547379.6 ENST00000536742.5 downstream upstream duplicates(1),mismatches(2) AGGCGAATCGGCTGCGGTTTGCTGGGAACGGAGGGCTGCAGCGCCCACCCTGCGCCAGAGACCAGATAAA___GAGTCAATCTTAAGATGTGATACTTTCCTGTGAAACCTGAAACAAGGTGATCTGGGGAACCAAAGACTCTGGGACTCTTGGTGCCAACAGAGTTACTCT|GTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCG___CCTCTCCCACTGCCGGACACAAAGGAGAATGGGGAAAAGGCCAAACAGAGAAGCCACAAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18828 SLC16A7::CCDC60 ENSG00000118596.12::ENSG00000183273.7 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3252 TRUE 1220 SLC16A7 ENSG00000118596.12 protein_coding + + chr12:59596029-59789855:+ chr12:59735988:+ chr12:59989810-60183636:+ chr12:60129769:+ CCDC60 ENSG00000183273.7 protein_coding + + chr12:119334712-119541040:+ chr12:119428683:+ chr12:119772517-119978845:+ chr12:119866488:+ chr12:59787683,chr12:59787735 chr12:119339260,chr12:119339260 NA NA chr12:60181464,chr12:60181516 chr12:119777065,chr12:119777065 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site deletion medium none Major_Facilitator_Superfamily(12%)|Domain_of_unknown_function_(DUF4698)(100%) MFS_1(44%)|DUF4698(100%) 1 1 61 5 83 ENST00000552432.5 ENST00000536742.5 downstream upstream duplicates(2),mismatches(5) GAGTCAATCTTAAGATGTGATACTTTCCTGTGAAACCTGAAACAAGGTGATCTGGGGAACCAAAGACTCTGGGACTCTTGGTGCCAACAGAGTTACTCTG...CTGTTATGTACGCAGGAG___GAAAAAAGGAGAAGCGGAATGCATCATTCACCCTTTAAAGAGATCACCATCTACTTGAG|GTCCCAGA?AAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCG___CCTCTCCCACTGCCGGACACAAAGGAGAATGGGGAAAAGGCCAAACAGAGAAGCCACAAGCAAGCAAGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18838 RNF10::COQ5 ENSG00000022840.17::ENSG00000110871.15 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF10 ENSG00000022840.17 protein_coding + + chr12:120533480-120577588:+ chr12:120557682:+ chr12:120971283-121015391:+ chr12:120995485:+ COQ5 ENSG00000110871.15 protein_coding - + chr12:120503279-120534434:- chr12:120516107:+ chr12:120941082-120972237:- chr12:120953910:+ chr12:120560151,chr12:120560139 chr12:120511386,chr12:120511370 NA NA chr12:120997954,chr12:120997942 chr12:120949189,chr12:120949173 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ring_finger_domain(100%)| zf-C3HC4(100%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_UBOX(100%)| 22 24 21 616 62 ENST00000325954.9 unknown downstream upstream duplicates(6),mismatches(2) TGTGGACACATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGAAGACGTGGAGTAAATGTCCCATCTGTTACAGTTCTGTGCATAAGAAGGATCTCAAGAG___TGTTGTTGCCACAGAGTCACATCAGTATGTTGTTGGTGATACCATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGACCATCCCATTCATCTAGGAG|GAGATGAGAGGTCCAGTTGCACAGCAATCAAACTATCCTAGTATGGACAGGAGAATGGAATGGTTCAAGAATGGGAATGATACACCGAAGTCACCCTGAAGCTGCTGGGAAATGACAGCAAAACTTCTGTCTCAGGGTCTCAGAGCTGAGATCTGAAGATTCAACTCCAATTTGGGATCTGCCACTGAGAAGTTGTGTGACTTGG___GACTCACCAGCTCTGTATCCTT CGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLG|gderssctaikls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18839 SLC6A6::ENSG00000255028 ENSG00000131389.18::ENSG00000255028.5 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3255 TRUE 1221 SLC6A6 ENSG00000131389.18 protein_coding + + chr3:14402576-14489349:+ chr3:14416453:+ chr3:14444076-14530857:+ chr3:14457961:+ ENSG00000255028 ENSG00000255028.5 lncRNA - - chr11:109355085-109583907:- chr11:109374477:- chr11:109225812-109454633:- chr11:109245203:- chr3:14423433,chr3:14423432 chr11:109476567,chr11:109476568 NA NA chr3:14464941,chr3:14464940 chr11:109347293,chr11:109347294 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none none 16 12 23 134 35 ENST00000613060.4 unknown downstream downstream duplicates(3),low_entropy(1),mismatches(1) CAGACAACAGACACGCGAGGTCAGGAAGAAGCCGCTTATAAATTACCGCTTCCTTCGCGCCGCCGCCAACGCCGAGCCCCGAGGACCGCAAGCCCAGAGGACAAGCTGCGCCAAGAGGGAGTGCGGAGCGTTCACCCAGCGGGTCAGAGAGCGAGCGGGCAGGCAGCCCCCGGCCGGCGGAACCCGGCACAGCCGAGCAGAGCGCGGGCGGCGCCGCAGCCACCCCAG___ATCCAGAACCAGAACCACAGCCCTTCTGAGGAGCTCCCAAAC|AAGAAAGGAATGGAATCTGAGCTAACCTACCATGTTTGTACTGGAAGTCCTGCCAACAGCATTTAAGGAGGCCTG___CCTCTCCTGCAGTCAGGTGTGACCAAAGGAGTATGAGTGAAAGTAATGTGTGCCTCTACAAAACCTGACGCATATGAAGAAACAAACCATCCATCCACACCTGATCCTTGTCTTCTCCATCTGCCAGCTGAATGGAGAG?AACAAAGAACTCCTGCTGACCCACACTGGACTATGACATGAGCAAG?AGCAC...CGTACTTGCTTTTGTCACTGAACATCATGTAAATTTTTCCAAATCTATTAGTATAGAGGCTACTCATTCTTTTTAATAGGGGTGTAATAATCCTATAT RQQTREVRKKPLINYRFLRAAANAEPRGPQAQRTSCAKRECGAFTQRVRERAGRQPPAGGTRHSRAERGRRRSHPRSRTRTTALLRSSQt|rkewnls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18840 SLC6A6::ENSG00000255028 ENSG00000131389.18::ENSG00000255028.5 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3255 TRUE 1221 SLC6A6 ENSG00000131389.18 protein_coding + + chr3:14402576-14489349:+ chr3:14416453:+ chr3:14444076-14530857:+ chr3:14457961:+ ENSG00000255028 ENSG00000255028.5 lncRNA - - chr11:109355085-109583907:- chr11:109416171:- chr11:109225812-109454633:- chr11:109286897:- chr3:14423433,chr3:14423432 chr11:109476567,chr11:109476568 NA NA chr3:14464941,chr3:14464940 chr11:109347293,chr11:109347294 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 3 3 41 134 17 ENST00000613060.4 ENST00000532929.1 downstream downstream duplicates(2) GAGCGAGCGGGCAGGCAGCCCCCGGCCGGCGGAACCCGGCACAGCCGAGCAGAGCGCGGGCGGCGCCGCAGCCACCCCAG___ATCCAGAACCAGAACCACAGCCCTTCTGAGGAGCTCCCAAAC|GCGCTGGGAACAGCCTTTGGCTGACAGCCAGCAAGGAAATGGGGACTTCAGTGCTACAACTTCAAGGAACTAAATTTTGCCAACAAATGTGAATAAGCTTCCAAGTGGATTCTTCCCCAGAGCCTCCAAATAAGAGCCCAGCCTGGCTTTCATCTTGATTTCATCTCTTTGAGACTCCAAGCAGAGAAGCTGGTCAGGCCCCCACCACTTCCTCCACCCATCAGACCTCTGACCTACAGAACTATCAG___GCAACAAGAATATGAC ERAGRQPPAGGTRHSRAERGRRRSHPRSRTRTTALLRSSQt|rweqpladsqqgngdfsattsrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18841 SLC6A6::ENSG00000255028 ENSG00000131389.18::ENSG00000255028.5 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3255 TRUE 1221 SLC6A6 ENSG00000131389.18 protein_coding + + chr3:14402576-14489349:+ chr3:14416453:+ chr3:14444076-14530857:+ chr3:14457961:+ ENSG00000255028 ENSG00000255028.5 lncRNA - - chr11:109355085-109583907:- chr11:109365068:- chr11:109225812-109454633:- chr11:109235795:- chr3:14423433,chr3:14423432 chr11:109476567,chr11:109476568 NA NA chr3:14464941,chr3:14464940 chr11:109347293,chr11:109347294 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 0 2 134 5 ENST00000613060.4 ENST00000532992.5 downstream downstream none CCAGAGGACAAGCTGCGCCAAGAGGGAGTGCGGAGCGTTCACCCAGCGGGTCAGAGAGCGAGCGGGCAGGCAGCCCCCGGCCGGCGGAACCCGGCACAGCCGAGCAGAGCGCGGGCGGCGCCGCAGCCACCCCAG___ATCCAGAACCAGAACCACAGCCCTTCTGAGGAGCTCCCAAAC|GAGTGGTGACAGTTTGAGACAAGGACAAGAGCACCAGACTTCAGAACTTGACATCCACAAAATGTAAATAAGATGAAAGTTCAGCTCTGTCATTTGACATATGAGTTCCGCCCTCTGCCCCTACTCCTAGCAACTCTCTGAGCCTCAGCTCTGCCTTCA QRTSCAKRECGAFTQRVRERAGRQPPAGGTRHSRAERGRRRSHPRSRTRTTALLRSSQt|sgdslrqgqehqtseldihkm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18842 PRH1::STYK1 ENSG00000231887.9::ENSG00000060140.9 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1764 FALSE NA FALSE NA PRH1 ENSG00000231887.9 protein_coding - - chr12:10824960-11171608:- chr12:11171422:- chr12:10977559-11324207:- chr12:11324021:- STYK1 ENSG00000060140.9 protein_coding - - chr12:10618923-10674318:- chr12:10620348:- chr12:10771522-10826917:- chr12:10772947:- chr12:11130820,chr12:11130820,chr12:11130822 chr12:10621742,chr12:10621740,chr12:10621741 NA NA chr12:11283419,chr12:11283419,chr12:11283421 chr12:10774341,chr12:10774339,chr12:10774340 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Protein_kinase_domain(8%) DUF4560(71%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%) 14 8 27 700 200 ENST00000546265.1 ENST00000075503.8 upstream downstream duplicates(2),mismatches(3) CTGGCCCCGGAGGCCGTTAGCTTAGTCATGGCTCTAAATATGTACCTGCAATCGGATGTTGAGGATCACCGAGCCCGCGACGTAGAAGTACGGGAAGTTCATGCGCAGCTGCCAGGCCAGCTCGAAGAAGGCGAGCAGGGTGCGGGAGAGCCCCTTGCAGAAGACGCCGTACGAG|GTACAGTATCATGAAGTCCTGCTGGCGCTGGCGTGAGGCTGACCGCCCCTCACCTAGAGAGCTGCGCTTGCGCCTAGAAGCTGCCATTAAAACTGCAGATGACGAGGCTGTGTTACAAGTACCAGAGTTGGTGGTACCTGAACTGTATGCAGCTGTGGCCGGCATCAGAGTGGAGAGCCTCTTCTACAACTATAGCATGCTTTGAAGAGTCTCGGGCAAGAAACATTCATGCATGAGTATATGTTCTTGGAATCAATTCCTCTAAGAACAGAGAATGGTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase STYK1 TK TK-Unique Q6J9G0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18843 ENSG00000275778::STYK1 ENSG00000275778.3::ENSG00000060140.9 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000275778 ENSG00000275778.3 protein_coding - - chr12:10845849-11171600:- chr12:11171422:- chr12:10998448-11324199:- chr12:11324021:- STYK1 ENSG00000060140.9 protein_coding - - chr12:10618923-10674318:- chr12:10620348:- chr12:10771522-10826917:- chr12:10772947:- chr12:11130820,chr12:11130820,chr12:11130822 chr12:10621742,chr12:10621740,chr12:10621741 NA NA chr12:11283419,chr12:11283419,chr12:11283421 chr12:10774341,chr12:10774339,chr12:10774340 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Protein_kinase_domain(8%) DUF4560(71%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%) 13 8 25 700 200 ENST00000536668.2 ENST00000075503.8 upstream downstream duplicates(2),mismatches(3) CCCCGGAGGCCGTTAGCTTAGTCATGGCTCTAAATATGTACCTGCAATCGGATGTTGAGGATCACCGAGCCCGCGACGTAGAAGTACGGGAAGTTCATGCGCAGCTGCCAGGCCAGCTCGAAGAAGGCGAGCAGGGTGCGGGAGAGCCCCTTGCAGAAGACGCCGTACGAG|GTACAGTATCATGAAGTCCTGCTGGCGCTGGCGTGAGGCTGACCGCCCCTCACCTAGAGAGCTGCGCTTGCGCCTAGAAGCTGCCATTAAAACTGCAGATGACGAGGCTGTGTTACAAGTACCAGAGTTGGTGGTACCTGAACTGTATGCAGCTGTGGCCGGCATCAGAGTGGAGAGCCTCTTCTACAACTATAGCATGCTTTGAAGAGTCTCGGGCAAGAAACATTCATGCATGAGTATATGTTCTTGGAATCAATTCCTCTAAGAACAGAGAATGGTCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase STYK1 TK TK-Unique Q6J9G0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18847 TAS2R14::STYK1 ENSG00000212127.6::ENSG00000060140.9 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TAS2R14 ENSG00000212127.6 protein_coding - - chr12:10937408-11171573:- chr12:11171422:- chr12:11090007-11324172:- chr12:11324021:- STYK1 ENSG00000060140.9 protein_coding - - chr12:10618923-10674318:- chr12:10620348:- chr12:10771522-10826917:- chr12:10772947:- chr12:11130820,chr12:11130820,chr12:11130822 chr12:10621742,chr12:10621740,chr12:10621741 NA NA chr12:11283419,chr12:11283419,chr12:11283421 chr12:10774341,chr12:10774339,chr12:10774340 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Protein_kinase_domain(8%) DUF4560(71%)|PK_Tyr_Ser-Thr(0%),Pkinase(0%) 12 8 16 700 200 ENST00000381852.4 ENST00000075503.8 upstream downstream duplicates(1),mismatches(1) CTGCAATCGGATGTTGAGGATCACCGAGCCCGCGACGTAGAAGTACGGGAAGTTCATGCGCAGCTGCCAGGCCAGCTCGAAGAAGGCGAGCAGGGTGCGGGAGAGCCCCTTGCAGAAGACGCCGTACGAG|GTACAGTATCATGAAGTCCTGCTGGCGCTGGCGTGAGGCTGACCGCCCCTCACCTAGAGAGCTGCGCTTGCGCCTAGAAGCTGCCATTAAAACTGCAGATGACGAGGCTGTGTTACAAGTACCAGAGTTGGTGGTACCTGAACTGTATGCAGCTGTGGCCGGCATCAGAGTGGAGAGCCTCTTCTACAACTATAGCATGCTTTGAAGAGTCTCGGGCAAGAAACATTCATGCATGAGTATATGTTCTTGGAATCAATTCCTCTAAGAACAGAGAATGGTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase STYK1 TK TK-Unique Q6J9G0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18848 MYO5C::GNB5 ENSG00000128833.13::ENSG00000069966.19 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3256 TRUE 1222 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52229133:- chr15:52484519-52588001:- chr15:52521330:- GNB5 ENSG00000069966.19 protein_coding - - chr15:52115100-52191392:- chr15:52135756:- chr15:52407297-52483589:- chr15:52427953:- chr15:52225557,chr15:52225560 chr15:52141098,chr15:52141098 NA NA chr15:52517754,chr15:52517757 chr15:52433295,chr15:52433295 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%)|WD_domain__G-beta_repeat(79%) IQ(100%),Myosin_head(100%)|WD40(80%) 11 8 15 69 181 ENST00000261839.12 ENST00000261837.12 upstream downstream duplicates(4),mismatches(1) CAGAACTAGAAAAAGCAGCCACTCACAGGCGAAATTACGAGGAGAAGGGGAAGAGATACAGGGATGCTGTGGAAGAG___AAATTGGCAAAGCTTCAGAAGCATAATTCAGAACTGGAAACACAGAAAGAACAAATACAGCTGAAGCTTCAAGAGAAGACTGAAGAGTTAAAAG___AAAAAATGGACAACCTCACCAAGCAGCTCTTTGATGATGTACAAAAGGAAGAACGGCAAAGAAT___GCTTCTTGAAAAAAGTTTTGAACTGAAAACACAAGACTATGAGAAGCAGATTCAGTCTTTGAAAGAAGAAATTAAAGCTCTCAAGGATGAGAAGATGCAACTCCAACACCTGGTGGAGGGGGAGCACGTCACTTCTGATGGCTTGAAGGCGGAAGTGGCCCGCCTGAGCAAGCAGGTCAAG|ATCCTGACAGCGAGCGGCGATGGCACATGTGCCCTGTGGGACGTGGAGAGCGGGCAGCTGCTGCAGAGCTTCCACGGACATGGGGCTGACGTCCTCTGCTTGGACCTGGCCCCCTCAGAAACTGGAAACACCTTCGTGTCTGGG___GGATGTGACAAGAAAGCCATGGTGTGGGACATGCGCTCCGGCCAGTGCGTGCAGGCCTTTGAAACACATGAATCTGACATCAACAGTGTCCG___GTACTACCCCAGTGGAGATGCCT ELEKAATHRRNYEEKGKRYRDAVEEKLAKLQKHNSELETQKEQIQLKLQEKTEELKEKMDNLTKQLFDDVQKEERQRMLLEKSFELKTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVK|ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1266 chr15:52277117-52277200:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18849 MYO5C::GNB5 ENSG00000128833.13::ENSG00000069966.19 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3256 TRUE 1222 MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52229133:- chr15:52484519-52588001:- chr15:52521330:- GNB5 ENSG00000069966.19 protein_coding - - chr15:52115100-52191392:- chr15:52133469:- chr15:52407297-52483589:- chr15:52425666:- chr15:52225557,chr15:52225560 chr15:52141098,chr15:52141098 NA NA chr15:52517754,chr15:52517757 chr15:52433295,chr15:52433295 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%)|WD_domain__G-beta_repeat(61%) IQ(100%),Myosin_head(100%)|WD40(67%) 1 3 4 69 229 ENST00000261839.12 ENST00000261837.12 upstream downstream none TGCTGCGTAGGCTTCTTGAAAAAAGTTTTGAACTGAAAACACAAGACTATGAGAAGCAGATTCAGTCTTTGAAAGAAGAAATTAAAGCTCTCAAGGATGAGAAGATGCAACTCCAACACCTGGTGGAGGGGGAGCACGTCACTTCTGATGGCTTGAAGGCGGAAGTGGCCCGCCTGAGCAAGCAGGTCAAG|GGATGTGACAAGAAAGCCATGGTGTGGGACATGCGCTCCGGCCAGTGCGTGCAGGCCTTTGAAACACATGAATCTGACATCAACAGTGTCCG___GTACTACCCCAGTGGAGATGCCTTTGCTTCAGGGTCAGATGACGCTACG___TGTCGCCTCTATGACCTGCGGGCAGATAGGGAGGTTGCCATCTATTCCAAAGAAAGCATCATATTTGGAGCATCCAGCGTGGACTTCTCCCTCAGTG___GTCGCCTGCTG...AGAGTAAGAGGGATGGTTTTCTGTTTTCCTGTGTGTGAGAGGAGAGAGGACTGGTGACAGGCCTTCTGAAGCAGAGGGAAGGCTATCAGAGTAAGCTCAGG lrrLLEKSFELKTQDYEKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVK|GCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1266 chr15:52277117-52277200:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18851 TTLL7::PRKACB ENSG00000137941.17::ENSG00000142875.21 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TTLL7 ENSG00000137941.17 protein_coding - - chr1:83865024-83999150:- chr1:83998931:- chr1:84330707-84464833:- chr1:84464614:- PRKACB ENSG00000142875.21 protein_coding + - chr1:84078062-84238498:+ chr1:84086606:- chr1:84543745-84704181:+ chr1:84552289:- chr1:83992212,chr1:83992214 chr1:84113546,chr1:84113545 NA NA chr1:84457895,chr1:84457897 chr1:84579229,chr1:84579228 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 10 3 17 154 29 ENST00000474957.5 unknown upstream downstream duplicates(6),mismatches(1) GCTTGGGCAGCGACAGCTGTTCCAGGCACTCCGCGTCGAGCACCGGAGTCCCGAGCCGTGGCTGCCACGGGCGGTGGGCGGGCGGAGGAGAGCACCGGACCACCAGTGCAGGCTGCCGAGTCGGGGCGGCCGCCCACGGGGAAGCTGCGAGGCGCGGGAGCACCTGGGGGACCGCTTGCAGCGGGGACGCGAGGACCCGGGCTGGGCTTTCCTCACCCGG|CAGCAAGAAAGAGAAATGCAGGTGGCAGAAGAGCCAGGCACGAGGCTTCAGATCGGAAGGGACCAGAGATGAGGACCAAGGTGTGGCTGCCTGACCAGGAGTGCTGTGGGCTGGCCTGGGCTCTCTCTATGCATCTTGAGAGAACTGCCACAGGCCCTAGAGGGAGGGGACGAAAGGCATGTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18852 DHDDS::AK4 ENSG00000117682.18::ENSG00000162433.15 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DHDDS ENSG00000117682.18 protein_coding + + chr1:26432282-26471306:+ chr1:26460144:+ chr1:26758773-26797797:+ chr1:26786635:+ AK4 ENSG00000162433.15 protein_coding + - chr1:65147549-65232145:+ chr1:65186791:- chr1:65613232-65697828:+ chr1:65652474:- chr1:26461852,chr1:26461851 chr1:65190043,chr1:65190044 NA NA chr1:26788343,chr1:26788342 chr1:65655726,chr1:65655727 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Putative_undecaprenyl_diphosphate_synthase(96%)| Prenyltransf(71%)| 9 3 13 120 18 ENST00000236342.12 unknown downstream downstream duplicates(2),mismatches(1) ACGAAGAACTACAACAA___...GTTTCCTGAATGT...CCTGGGGGGTGGAGCAAGGCCTGTTGGATCCCAG___TGATATCTCTGAGTCTCTGCTTGATAAGTGCCTCTATACCAACCGCTCTCCTCATCCTGACATCTTGATACGGACTTCTGGAGAAGTGCGGCTGAGTGACTTCTTGCTATGGCAG___ACCTCTCACTCCTGCCTGGTGTTCCAACCCGTTCTGTGGCCAGAGTATACATTTTGGAACCTCTTCGAGGCCATCCTGCAGTTCCAGATGAACCATAGCaTGCTTCAG|GTCTAAACAATCACTATCAGAAAAGATGCAAGGAGCAACTGACAACCTGGGTGCTGTCCCACTCTGCAATAGTCACGCCAGGCCCAGAGCCCCATTCTTAGTCTCATCCACCAAACTTTAAGGTAGATAAACAACAAATACACATCTTCCAAGGTGAAAGACCAAAATGTGTATTTTGCATTGTTTTCTAGA WGVEQGLLDPSDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQPVLWPEYTFWNLFEAILQFQMNHSmLQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18858 LEPR::DNAJC6 ENSG00000116678.20::ENSG00000116675.16 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65425378:+ chr1:65886335-66107242:+ chr1:65891061:+ DNAJC6 ENSG00000116675.16 protein_coding + + chr1:65248219-65415871:+ chr1:65408641:+ chr1:65713902-65881554:+ chr1:65874324:+ chr1:65510477,chr1:65510466 chr1:65406938,chr1:65406923 NA NA chr1:65976160,chr1:65976149 chr1:65872621,chr1:65872606 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |DnaJ_domain(100%) Vps55(1%)|DnaJ(100%) 0 14 3 1282 622 ENST00000349533.11 ENST00000263441.11 downstream upstream duplicates(2),mismappers(1),mismatches(1) cTCGGGAGACATGGCGGGCGTTAAAG___CTCTCGTGGCATTATCCTTCAGTGGGGCTATTGGACTGACTTTTCTTATGCTGGGATGTGCCTTAGAGGATTATGG|AAGGGAAACAAAAAGCAGCTGATTTTGAAGACCTACTCTCTGGTCAAGGTTTCAATGCTCACAAAGACAAAAAGGGGCCTCGGACAATAGCTGAGATGAGAAAGGAGGAAATGGCCAAGGAAATGGATCCTGAGAAATTAAAG___ATTCTGGAATGGATTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18862 LINC01814::ENSG00000231083 ENSG00000236008.5::ENSG00000231083.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3259 TRUE 1223 LINC01814 ENSG00000236008.5 lncRNA - - chr2:8461703-8592903:- chr2:8576911:- chr2:8601833-8733033:- chr2:8717041:- ENSG00000231083 ENSG00000231083.1 lncRNA - - chr2:8600892-8622942:- chr2:8613235:- chr2:8741022-8763072:- chr2:8753365:- chr2:8559375,chr2:8559379 chr2:8621103,chr2:8621104 NA NA chr2:8699505,chr2:8699509 chr2:8761233,chr2:8761234 NA NA sense sense unknown exon/splice-site intron duplication high none none none 2 1 10 277 18 ENST00000670008.1 unknown upstream downstream duplicates(2),mismatches(1) CAGATGAGGAAcCTGGGGCGTTTGGCTAAAGTTGTTGATTTGCCAGAGTCCCACAGCAGTGG___CTTCACAGAGAGGCAGATGCCACACAGGCCACCCACCCAGATGCAGAGCCAGATTCCCTGtGTGGACTGGACGGGAGTTTCCCAGCTGGAGTTCTCTCGGCCAAGCTGCCTGTGACATGGGGTTGGAGGTGCTCCAGAGAGTCATGGCCACCCCTGGAGGAAGTGACTTGTGGCTGACTGCTCAAGGGGAAGTCCTGTGGCAGTGGAGTCGTCAGCATTAATTCAAATAAG|GAAGCAAGAAAATAAATCCATGAGACTCTCATTAGATTTTTTCAAACAAAGTAACTTGATCTTATCCCTGGAAGGGAGCACCATGCCTCGGACACAGTTACTCCAGAGATCTCATCCCTGCCTCAACTATTCTGAATGGCTTCTTTGGGAGGTGGTTGCAGAGACAGCTTACTGATCACACAGGAAAATGATTGCCATGACCTTCTATCACTATCTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18863 LINC01814::ENSG00000231083 ENSG00000236008.5::ENSG00000231083.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3259 TRUE 1223 LINC01814 ENSG00000236008.5 lncRNA - - chr2:8461703-8592903:- chr2:8570448:- chr2:8601833-8733033:- chr2:8710578:- ENSG00000231083 ENSG00000231083.1 lncRNA - - chr2:8600892-8622942:- chr2:8607801:- chr2:8741022-8763072:- chr2:8747931:- chr2:8559375,chr2:8559379 chr2:8621103,chr2:8621104 NA NA chr2:8699505,chr2:8699509 chr2:8761233,chr2:8761234 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 11 103 48 ENST00000454224.1 ENST00000425678.1 upstream downstream duplicates(2),mismatches(1) GACTTGTGGCTGACTGCTCAAGGGGAAGTCCTGTGGCAGTGGAGTCGTCAGCATTAATTCAAATAAG___ATCTCTCCCTGCACACAATCTGCTTTCGTGTTCCTGATGGATTGAATCAAGAGTGAATGAGCTCCTACTTCGCGAAAGCAAAACAAACTAAACGCATCAACCACGACCGCAGAGCCCCCATCTCTCCCAGGAGG|GAAATAAAGGAAAAGAATGTCTTGCTAAATCAACAAAGCTGCTGTATCATTGTTCATTTGGCCAGGCAATTCCTCATGGGACCAGTAATAAGCTTCAGCTCGGCCAAACCCATTTTTGATAGCAATCAAGATGATTTACCATTTAAAGTATTCAGCACTTCTAAGACCTGGTTGAGGAGTTCACGAACAGCAGGCAGAGCTGGGCAGAAGAGATCAAGACAGACGGGACCTCAGCGATCATGGGTTCCAGCCTTTTCCTTTCACAGGTGAGGACACcGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18864 LINC01814::ENSG00000231083 ENSG00000236008.5::ENSG00000231083.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE TRUE 1769 TRUE 3259 TRUE 1223 LINC01814 ENSG00000236008.5 lncRNA - - chr2:8461703-8592903:- chr2:8576911:- chr2:8601833-8733033:- chr2:8717041:- ENSG00000231083 ENSG00000231083.1 lncRNA - - chr2:8600892-8622942:- chr2:8607801:- chr2:8741022-8763072:- chr2:8747931:- chr2:8559375,chr2:8559379 chr2:8621103,chr2:8621104 NA NA chr2:8699505,chr2:8699509 chr2:8761233,chr2:8761234 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 2 4 6 277 48 ENST00000648900.2 ENST00000425678.1 upstream downstream duplicates(2),mismatches(1) GTTGGTTCTTGAATCAGTTGGCTGCCCCGGATGTCTGAATCCCTTGGAAGGAACCTGGAGGAGTTGGCTGATGGGCTCCAG___GTGCTACCGGATCACCCTAA...CAGAGTCCCACAGCAGTGG___CTTCACAGAGAGGCAGATGCCACACAGGCCACCCACCCAGATGCAGAGCCAGATTCCCTGtGTGGACTGGACGGGAGTTTCCCAGCTGGAGTTCTCTCGGCCAAGCTGCCTGTGACATGGGGTTGGAGGTGCTCCAGAGAGTCATGGCCACCCCTGGAGGAAGTGACTTGTGGCTGACTGCTCAAGGGGAAGTCCTGTGGCAGTGGAGTCGTCAGCATTAATTCAAATAAG|GAAATAAAGGAAAAGAATGTCTTGCTAAATCAACAAAGCTGCTGTATCATTGTTCATTTGGCCAGGCAATTCCTCATGGGACCAGTAATAAGCTTCAGCTCGGCCAAACCCATTTTTGATAGCAATCAAGATGATTTACCATTTAAAGTATTCAGCACTTCTAAGACCTGGTTGAGGAGTTCACGAACAGCAGGCAGAGCTGGGCAGAAGAGATCAAGACAGACGGGACCTCAGCGATCATGGGTTCCAGCCTTTTCCTTTCACAGGTGAGGACACTGAGGATGCCTGGGAGAAGGAACTTGCTGGAGGTCCCTGCGAGGGTGTCTGAG___AGAGTGAAGTTTCAAACTTGATCTTCAAGAAAACAGACTATCTATCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18865 LINC01814::ENSG00000231083 ENSG00000236008.5::ENSG00000231083.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3259 TRUE 1223 LINC01814 ENSG00000236008.5 lncRNA - - chr2:8461703-8592903:- chr2:8575366:- chr2:8601833-8733033:- chr2:8715496:- ENSG00000231083 ENSG00000231083.1 lncRNA - - chr2:8600892-8622942:- chr2:8607801:- chr2:8741022-8763072:- chr2:8747931:- chr2:8559375,chr2:8559379 chr2:8621103,chr2:8621104 NA NA chr2:8699505,chr2:8699509 chr2:8761233,chr2:8761234 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 0 1 7 21 48 ENST00000685270.1 ENST00000425678.1 upstream downstream duplicates(2),mismatches(1) TCGGGATCCATAGGAGACTGGAACCTGGACcGCAGGGACCCGACGCTCAGG|GAAATAAAGGAAAAGAATGTCTTGCTAAATCAACAAAGCTGCTGTATCATTGTTCATTTGGCCAGGCAATTCCTCATGGGACCAGTAATAAGCTTCAGCTCGGCCAAACCCATTTTTGATAGCAATCAAGATGATTTACCATTTAAAGTATTCAGCACTTCTAAGACCTGGTTGAGGAGTTCACGAACAGCAGGCAGAGCTGGGCAGAAGAGATCAAGACAGACGGGACCTCAGCGATCATGGGTTCCAGCCTTTTCCTTTCACAGGTGAGGACACcGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18869 POLQ::ARGFX ENSG00000051341.15::ENSG00000186103.5 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POLQ ENSG00000051341.15 protein_coding - - chr3:121431431-121545988:- chr3:121467519:- chr3:121150278-121264835:- chr3:121186366:- ARGFX ENSG00000186103.5 protein_coding + - chr3:121567949-121590622:+ chr3:121570243:- chr3:121286796-121309469:+ chr3:121289090:- chr3:121453799,chr3:121453802 chr3:121581313,chr3:121581313 NA NA chr3:121172646,chr3:121172649 chr3:121300160,chr3:121300160 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none DEAD/DEAH_box_helicase(100%),DNA_polymerase_family_A(46%),Helicase_conserved_C-terminal_domain(100%)| DEAD(100%),DNA_pol_A(20%),Helicase_C(100%)| 3 4 3 105 10 ENST00000264233.6 unknown upstream downstream duplicates(1),mismappers(1) AAGGGTTTCAGCGTGAATCCTAGATGCCAGGCACAGATGGAGGAGAGAGCTGCAGACAGAGGAATGCCATTTTCAATTAGCATGCGACATGCCTTTGTGCCTTTCCCAG|GAAAGAAGGTGAAATGAAGACATTCTCTGAACTATGAGAATCTGTGGCCAGTAGTCCTGTTCTGTGGAGTATTAAAGAAAATTCTTCCTAAGAGGGAAAATTGGAACTTCAAGAATAAAGGAAAAGCCACACATATG___GACGGGCATGGTGGCTCACGCCTGTAATCTCAGCACTTTGAAAGGCCGAGGAGGGTGAATTACTTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTAAAGCCCCATCTCTACTAAGAATACGAAAATTAGCTGGGCGTGGTGGCACGCcCCTGTAGTCCCAGCTACTAGGGAG...TGTCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTCAAAAAAAAtAAAAAAAAAAAAGTTTTCACATTGCAACTCATCTTTAAGAAACTGCTA KGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFP|gkkvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA polymerase theta 1 oral SCC breast cancer epithelial oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 18870 CCDC91::CRTC3 ENSG00000123106.11::ENSG00000140577.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3261 TRUE 1224 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28549130:+ chr12:28286182-28734444:+ chr12:28702063:+ CRTC3 ENSG00000140577.17 protein_coding + + chr15:90529923-90645345:+ chr15:90593636:+ chr15:91073155-91188577:+ chr15:91136868:+ chr12:28550308,chr12:28550309 chr15:90574772,chr15:90574770 NA NA chr12:28703241,chr12:28703242 chr15:91118004,chr15:91118002 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none |Transducer_of_regulated_CREB_activity__C_terminus(100%),Transducer_of_regulated_CREB_activity__N_terminus(9%),Transducer_of_regulated_CREB_activity_middle_domain(100%) |TORC_C(100%),TORC_M(100%),TORC_N(7%) 2 1 6 375 132 ENST00000542801.5 ENST00000268184.11 downstream upstream none CAGAAACGAAGTGAAAAGGCTGTGGAAGAGGCAGTGAAAAGAACAAGAGATGAATTGATAGAGTATATAAAAGAACAGAAAAGG___CTCGATCAAGTCATCCGCCAAAGAAGCCTGTCCAGTTTGGAACTGTTCCTCTCCTGTGCACAGAAACA|CCGTCATTTCACCAAGCTGATAATGTTCGGGGAACCCGCCATCACGGGCTGGTGGAGAGGCCATCCAGGAACCGCTTCCACCCCCTCCACCGAAGGTCTGGGGACAAGCCAGGGCGACAA___TTTGATGGTAGTGCTTTTGGAGCCAATTATTCCTCACAGCCTCTGGATGAGAGTTGGCCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CREB regulated transcription coactivator 3 1 salivary gland mucoepidermoid epithelial fusion translocation 18871 CCDC91::CRTC3 ENSG00000123106.11::ENSG00000140577.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3261 TRUE 1224 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28484165:+ chr12:28286182-28734444:+ chr12:28637098:+ CRTC3 ENSG00000140577.17 protein_coding + + chr15:90529923-90645345:+ chr15:90593636:+ chr15:91073155-91188577:+ chr15:91136868:+ chr12:28550308,chr12:28550309 chr15:90574772,chr15:90574770 NA NA chr12:28703241,chr12:28703242 chr15:91118004,chr15:91118002 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Transducer_of_regulated_CREB_activity__C_terminus(100%),Transducer_of_regulated_CREB_activity__N_terminus(9%),Transducer_of_regulated_CREB_activity_middle_domain(100%) |TORC_C(100%),TORC_M(100%),TORC_N(7%) 2 1 4 438 132 ENST00000539107.5 ENST00000560927.1 downstream upstream none GTGAAGGATGCAGTTTTAAAAGTCGTAGcAGAAGAAAGAAAAAATTTAaAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAAgcTGCAAAAGA...AAAATAAGTCAG___GAAACTGTTAAGGCAGCAATAATAGAAGAGCAGAAACGAAGTGAAAAGGCTGTGGAAGAGGCAGTGAAAAGAACAAGAGATGAATTGATAGAGTATATAAAAGAACAGAAAAGG|CCGTCATTTCACCAAGCTGATAATGTTCGGGGAACCCGCCATCACGGGCTGGTGGAGAGGCCATCCAGGAACCGCTTCCACCCCCTCCACCGAAGGTCTGGGGACAAGCCAGGGCGACAAATATCCTTTTTTACTCTTCAAAGGGAGTGTGCATTCTGAAATGTTTGAAAAGTTTTCA...___TTTG KISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKR|psfhqadnvrgtrhhglverpsrnrfhplhrrsgdkpgrqisfftlqrecaf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CREB regulated transcription coactivator 3 1 salivary gland mucoepidermoid epithelial fusion translocation 18878 RTN4RL2::FAM111A ENSG00000186907.8::ENSG00000166801.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3263 TRUE 1225 RTN4RL2 ENSG00000186907.8 protein_coding + + chr11:57460528-57477534:+ chr11:57460896:+ chr11:57228001-57245007:+ chr11:57228369:+ FAM111A ENSG00000166801.17 protein_coding + + chr11:59142748-59155039:+ chr11:59145827:+ chr11:58910221-58922512:+ chr11:58913300:+ chr11:57467217,chr11:57467216 chr11:59143744,chr11:59143740 NA NA chr11:57234690,chr11:57234689 chr11:58911217,chr11:58911213 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Trypsin-like_peptidase_domain(100%) |Trypsin(100%),Trypsin_2(100%) 0 1 3 14 117 ENST00000335099.8 ENST00000675163.1 downstream upstream none GGCCCGGCCACGCAGCCCGGGGACTCCCGGGCCCTCCCGGAGCCCCGCGGGGTCCCCGCCGTGCATCCGGCGGGCTCAGGGAGCGAGTGGGAGCGCCCTCCCCCCGCTGCCCCCTCCCCCGAGCATCGAGACAAGATGCTGCCCGGGCTCAGGCGCCTGCTGCAAG|GTTCTCTGCTGTTTAAAAAGTATCCCTGTG___CTTTGAAGATACTGCTATAATTTGAAAATTTGAAATTAGTGTTTCAGCTGAACCATCCGTTCATCTTCA...TCTCCG___GTCTCTAAAGAGCAACAGAATAATTGCAGTACTTCTCTAATGAGGATGGAGTCTAGAGGAGACCCAAGAGCCACAACTAATACCCAGGCTCAAAG MLPGLRRLLQ|gsllfkkypcalkill* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18879 RTN4RL2::FAM111A ENSG00000186907.8::ENSG00000166801.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3263 TRUE 1225 RTN4RL2 ENSG00000186907.8 protein_coding + + chr11:57460528-57477534:+ chr11:57460896:+ chr11:57228001-57245007:+ chr11:57228369:+ FAM111A ENSG00000166801.17 protein_coding + + chr11:59142748-59155039:+ chr11:59148704:+ chr11:58910221-58922512:+ chr11:58916177:+ chr11:57467217,chr11:57467216 chr11:59143744,chr11:59143740 NA NA chr11:57234690,chr11:57234689 chr11:58911217,chr11:58911213 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Trypsin-like_peptidase_domain(100%) |Trypsin(100%),Trypsin_2(100%) 0 1 2 14 27 ENST00000335099.8 ENST00000527629.6 downstream upstream none GGCCCGGCCACGCAGCCCGGGGACTCCCGGGCCCTCCCGGAGCCCCGCGGGGTCCCCGCCGTGCATCCGGCGGGCTCAGGGAGCGAGTGGGAGCGCCCTCCCCCCGCTGCCCCCTCCCCCGAGCATCGAGACAAGATGCTGCCCcGGCTCAGGCGCCTGCTGCAAG|GTACCATCTCCgGGGAGgGCAAGGTTGGAGCCTAAGGGGAAAGATGGGACGCAGGACACtAGCTAATCTTTTCCTCTGTACAAT...TTTGAAGAgACTGCTATAATTTGAAAATTTGAAATTAGTGTTTCAGCTGAACCATCCGTTCATCTTCAAGCCATCATGAGCTGTAAGAAGCAGAGGTCACG...GTCAATGAAAAATGTAATATGAAAATCGAGCACTATTTTTCTCCG___GTCTCTAAAGAGCAACAGAATAATTGCAGTACTTCTCTAATGAGGATGGAGTCTAG MLPrLRRLLQ|gtisgegkvga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18880 RTN4RL2::FAM111A ENSG00000186907.8::ENSG00000166801.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3263 TRUE 1225 RTN4RL2 ENSG00000186907.8 protein_coding + + chr11:57460528-57477534:+ chr11:57460896:+ chr11:57228001-57245007:+ chr11:57228369:+ FAM111A ENSG00000166801.17 protein_coding + + chr11:59142748-59155039:+ chr11:59148836:+ chr11:58910221-58922512:+ chr11:58916309:+ chr11:57467217,chr11:57467216 chr11:59143744,chr11:59143740 NA NA chr11:57234690,chr11:57234689 chr11:58911217,chr11:58911213 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |Trypsin-like_peptidase_domain(100%) |Trypsin(100%),Trypsin_2(100%) 0 2 1 14 117 ENST00000335099.8 ENST00000528737.5 downstream upstream duplicates(1) CGGCGGGCTCAGGGAGCGAGTGGGAGCGCCCTCCCCCCGCTGCCCCCTCCCCCGAGCATCGAGACAAGATGCTGCCCGGGCTCAGGCGCCTGCTGCAAG|TGTTTCAGCTGAACCATCCGTTCATCTTCAAGCCATCATGAGCTGTAAGAAGCAGAGGTCACGGAAGCACTCAGTCA...AAAATCGAGCACTATTTTTCTCCG___GTCTCTAAAGAGCAACAGAATAATTGCAGTACTTCTCTAATGAGGATGGAGTCTAGAGGAGACCCAAGAGCCACAAC...AAGATATGAAACTTAAGCTCACACATAGTGAGAATAGTAGCTTATATATGGCTCTCAACACTCTCCAGGCTGTCAGAAAAGAGATAGAAACTCACCAAGGC MLPGLRRLLQ|vfqlnhpfifkps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18886 NAV3::ENSG00000258084 ENSG00000067798.16::ENSG00000258084.6 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAV3 ENSG00000067798.16 protein_coding + + chr12:77324641-78213010:+ chr12:77325214:+ chr12:77718421-78606790:+ chr12:77718994:+ ENSG00000258084 ENSG00000258084.6 lncRNA + + chr12:78352519-78483030:+ chr12:78423192:+ chr12:78746299-78876810:+ chr12:78816972:+ chr12:77344344,chr12:77344325 chr12:78370749,chr12:78370727 NA NA chr12:77738124,chr12:77738105 chr12:78764529,chr12:78764507 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 0 1 2 2 1 ENST00000550042.2 ENST00000548963.1 downstream upstream duplicates(1) AGAGGCGCCGCGCCCGGTCCCGCGCCCGGTCCCGCACCCGCTCTCAGCGGCCCAAGCAGTTTCTTTCTGGGTGACAAGAATGTGCCTCGGTTGGTTTTTCTTTTTTTTCTCCATCTCCTTAAGACGATTTCCATAGTAACCTGATCAAGTGGCTCAAAATCGCAAACCTGAGGATTTCCGCGGCCCGCCGGCAAGACCTCGGCCAG|CCACGTAAGATGTGCCTGCTTCCCTTCGCCTTCTGCCA...TAGCAGAAAATAATTCAG___AGTTTCCCTGTTGTTGATGAGGCTGGAGTGCAATGGCACAATCTCGGCTCACCGCAGCCTCCACCTCCAAGGTTCAAGCAATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18889 NBAS::MIR3681HG ENSG00000151779.14::ENSG00000224184.7 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15275484:- chr2:15307040-15701464:- chr2:15415608:- MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12570020:+ chr2:11974052-12843039:+ chr2:12710146:+ chr2:15273130,chr2:15273094 chr2:12562609,chr2:12562609 NA NA chr2:15413254,chr2:15413218 chr2:12702735,chr2:12702735 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(100%)| Nbas_N(100%),Sec39(100%)| 1 0 1 141 7 ENST00000281513.10 unknown upstream upstream none GACAGATGAAAACATGAGTCCTCTTGAAGCATTGGAGCCAGTTCTTTCAAGTCAAAATATCTTGTCTATTTCCAAACTTGTTCCCAAAATCCCTGAAAAGG...GTGACCTCATCACTGTGGTAGATGCAGTTACATTTTCTCCAAAAGCTGTGACCAAG|ACTCAGCCCACCTGCACCCAGGTGAAATAAACAGCCATGTTGCCCACACAAAGCCTGTTTGGTGGTCTCTTCACACGGACGCTCATGGAATTTGGTGCCGTGACTCAGATCGGG DLITVVDAVTFSPKAVTK|tqptctqvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18892 C2CD5::C2CD5-AS1 ENSG00000111731.13::ENSG00000250166.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3265 TRUE 1226 C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22453896:- chr12:22601517-22697480:- chr12:22606830:- C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22468626:+ chr12:22562171-22771802:+ chr12:22621560:+ chr12:22452877,chr12:22452883 chr12:22454252,chr12:22454246 NA NA chr12:22605811,chr12:22605817 chr12:22607186,chr12:22607180 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none C2_domain(100%)| C2(100%)| 18 8 8 448 86 ENST00000333957.8 ENST00000689593.1 upstream upstream duplicates(4) CTAAGTATCTTGGGATAATTAACATGTTTTTTATTCGAGAGACTACTTCTCTTCGGGAG___GAAGGAGGAGTCAGTGGTTTTCTCCATGCTTTTATTGCTGAAGTGTTTGCAATGGTGAGAGCTCATGTTGCTGCATTAGGAGGGAATGCTGTTGTCTCCTACATAATGAAGCAGTGTGTCTTCATGGAGAATCCAAATAAAAACCAG|GACATTGAGATATGCTACAATTCTCTATGGAGTTCTAAATCAGAATTTTGGGTGATCACAAAAAGGAAAAAGGACCACAGTTACTACGTTACAAAGTTCAGAATCTGGAAGCAGCTTATTTTTCGTCTTTGAAATATGAGACAAG KYLGIINMFFIRETTSLREEGGVSGFLHAFIAEVFAMVRAHVAALGGNAVVSYIMKQCVFMENPNKNQ|dieicynslwssksefwvitkrkkdhsyyvtkfriwkqlifrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18893 C2CD5::C2CD5-AS1 ENSG00000111731.13::ENSG00000250166.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3265 TRUE 1226 C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22453896:- chr12:22601517-22697480:- chr12:22606830:- C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22585606:+ chr12:22562171-22771802:+ chr12:22738540:+ chr12:22452877,chr12:22452883 chr12:22454252,chr12:22454246 NA NA chr12:22605811,chr12:22605817 chr12:22607186,chr12:22607180 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none C2_domain(100%)| C2(100%)| 0 1 0 448 1 ENST00000333957.8 ENST00000661495.1 upstream upstream none GCTGTTGTCTCCTACATAATGAAGCAGTGTGTCTTCATGGAGAATCCAAATAAAAACaAG|AAGATCAAACTCTCCCAAAAAGTAGAGATTAAACAACAACTAAAGATGGCGAATCATAGAAG___TTACCACCATTCCTGGTATTGGTCCCAG AVVSYIMKQCVFMENPNKNk|kiklsqkveikqqlkmanhrsyhhswyws NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18900 RACGAP1::ENSG00000257735 ENSG00000161800.13::ENSG00000257735.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RACGAP1 ENSG00000161800.13 protein_coding - - chr12:49976923-50033136:- chr12:49994131:- chr12:50370706-50426919:- chr12:50387914:- ENSG00000257735 ENSG00000257735.1 lncRNA + - chr12:48350945-48442411:+ chr12:48377797:- chr12:48744728-48836194:+ chr12:48771580:- chr12:49994042,chr12:49994046 chr12:48380334,chr12:48380335 NA NA chr12:50387825,chr12:50387829 chr12:48774117,chr12:48774118 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),RhoGAP_domain(58%)| C1_1(100%),RhoGAP(15%)| 2 2 1 628 4 ENST00000312377.10 unknown upstream downstream none CCCCTCCATTGTTGTGCATTGTGTAAATGAGATTGAGCAAAGAGGTCTGACTGAG___ACAGGCCTGTATAGGATCTCTGGCTGTGACCGCACAGTAAAAGAGCTGAAAGAGAAATTCCTCAGAGTGAAAACTGTACCCCTCCTCAGCAAAGTGGATGATATCCATGCTATCTGTAGCCTTCTAAAAGACTTTCTTCGAAACCTCAAAGAACCTCTTCTGACCTTTCGCCTTAACAGAGCCTTTATGGAAGCAGCAG|GTCAAAGCAAACTGTTTTTGATGGGCCTTGCAAGCTGGGATGAAGGAAATGGCATTAGCCACGTCAATAGCTGCACAGCAAGTATTAGGAGGCATACTGATTTTCTCCAATAAGATTCCTCATCTAGCAGAGCCAGCGAAATTGGAGTCACCACTTAATTAAATTCATTGTAGTCCACAGTCATTCTCAAAAATCCATCTGACAGCTACACGAGTCAAACAGGTGAGTTAAAT PSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAA|gqsklflmglaswdegngishvnsctasirrhtdflq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18902 CLNS1A::RSF1 ENSG00000074201.9::ENSG00000048649.14 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77619606:- chr11:77225981-77348839:- chr11:77330651:- RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77764689:- chr11:77371054-77531915:- chr11:77475734:- chr11:77593467,chr11:77593473 chr11:77777627,chr11:77777630 NA NA chr11:77304512,chr11:77304518 chr11:77488673,chr11:77488676 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(100%)|PHD-finger(100%),WSTF__HB1__Itc1p__MBD9_motif_1(100%) Voldacs(100%)|PHD(100%),WHIM1(100%) 1 0 3 1519 201 ENST00000525428.6 ENST00000308488.11 upstream downstream duplicates(1) GAAGGGCCTCGGCACTGGTACCCTTTACATCGCTGAGAG___CCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGATTCTCACTGGAATACCCCACCATTAGTT...AGtCAGTATAATATGGCTGGGGTCAGGACAGAAGATTCAATAAGAGATTATGAAG___ATGGGATGGAGGTGGATACCACACCAACAGTTGCTGGACAGTTTGAGGATGCAGATGTTGATCACTGAAAATGATTTATGCAAGTTTAAG|TACCAAAAGAATTGGTGGAGCTCCATTTGAAGCTGATGAGGAAAATTGGCAAATCTGTTACTGCAGACAGATGGGAAAAATATTTGATCAAG___ATATGCCAAGAGTTTAACAGTACCTGGGCATGGGAGATGGAGAAGAAGGGCTATCTTGAAATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18903 ATL2::SLC8A1 ENSG00000119787.14::ENSG00000183023.19 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3267 FALSE NA ATL2 ENSG00000119787.14 protein_coding - - chr2:38293954-38377285:- chr2:38377143:- chr2:38521096-38604427:- chr2:38604285:- SLC8A1 ENSG00000183023.19 protein_coding - - chr2:40097270-40611053:- chr2:40177855:- chr2:40324410-40838193:- chr2:40404995:- chr2:38329198,chr2:38329202 chr2:40397283,chr2:40397284 NA NA chr2:38556340,chr2:38556344 chr2:40624423,chr2:40624424 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Calx-beta_domain(10%),Sodium/calcium_exchanger_protein(48%) GBP(0%)|Calx-beta(0%),Na_Ca_ex(97%) 0 1 2 514 73 ENST00000378954.9 ENST00000407929.6 upstream downstream duplicates(1) GGGGACGAGGCAGCGCGAGGGCAGCAACCGCACCAGGGGCTGcGGCGCCGGCGACGGACCAGCGACCCAAGCGCCGCGGTTAACCACGTCTCGTCCACGACCTCCCTAG|GAAGATCATTACCATTAGAATATTTGACCGTGAGGAATATGAGAAAGAGTGCAGTTTCTCCCTTGTGCTTGAGGAACCAAAATGGATAAGAAGAGGAATGAAAG___GTGGCTTCACAATAACAG___ACGAATATGATGACAAGCAGCCACTGACCAGCAAAGAGGAAGAGGA GDEAARGQQPHQGLrRRRRTSDPSAAVNHVSSTTSL|gRSLPLEYLTVRNMRKSAVSPLCLRNQNG* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18917 C2CD5::C2CD5-AS1 ENSG00000111731.13::ENSG00000250166.4 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3265 TRUE 1226 C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22469709:- chr12:22601517-22697480:- chr12:22622643:- C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22468626:+ chr12:22562171-22771802:+ chr12:22621560:+ chr12:22452877,chr12:22454246,chr12:22454252,chr12:22452883 chr12:22454252,chr12:22452883,chr12:22452877,chr12:22454246 NA NA chr12:22605811,chr12:22607180,chr12:22607186,chr12:22605817 chr12:22607186,chr12:22605817,chr12:22605811,chr12:22607180 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none C2_domain(100%)| C2(100%)| 6 2 5 516 86 ENST00000333957.8 ENST00000689593.1 upstream upstream duplicates(2),mismatches(1) AGCCTGTACTTTAAACTACGATCTATGATCCCCTGCTGCCTTTGCCATGTAAATTTTACAGTATCTCTGCCTGAAGATGAATTAATTCAG___GTTACAGTCACGGCAGTCGCAATCACTTTTGACAAAAATCAGGCTTTACAAACCACAAAAACCCCTGTTGAAAAGTCATTGCAAAGAG___CCTCAACAGATAATGAAGAACTTTTACAATTTCCACTGGAACTGTGTTCAGATTCACTTCCTTCTCATCCTTTTCCACCAGCTAAAG|GACATTGAGATATGCTACAATTCTCTATGGAGTTCTAAATCAGAATTTTGGGTGATCACAAAAAGGAAAAAGGACCACAGTTACTACGTTACAAAGTTCAGAATCTGGAAGCAGCTTATTTTTCGTCTTTGAAATATGAGACAAGATCTATTTATCTATATAAACAGACTTTGTACTGATTTAATAAAG SLYFKLRSMIPCCLCHVNFTVSLPEDELIQVTVTAVAITFDKNQALQTTKTPVEKSLQRASTDNEELLQFPLELCSDSLPSHPFPPAK|gh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18922 ENSG00000225087::ENSG00000286863 ENSG00000225087.2::ENSG00000286863.2 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000225087 ENSG00000225087.2 lncRNA - - chr1:72636547-72899240:- chr1:72898774:- chr1:73102230-73364923:- chr1:73364457:- ENSG00000286863 ENSG00000286863.2 lncRNA + - chr1:72283170-72753772:+ chr1:72482206:- chr1:72748853-73219455:+ chr1:72947889:- chr1:72666036 chr1:72666352 NA NA chr1:73131719 chr1:73132035 NA NA sense antisense unknown exon intron deletion/5'-5' low none none none 0 0 4 79 7 ENST00000654386.1 unknown upstream downstream duplicates(1) GGTGCGATATAATcTCGTGGTGCGCCGTTTTTTAAGCTGGTTGGAAAAGCGCAGTATTCGCGTGGGAGTGACCCGATTTTCCAG___TGAGATGAACCCGGTACCTCAGATTGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCT...|...GGCCCCACCCTCAGGCCTGGAACCTCGGCCCAAAGTGAGAACATACATTCCTATTTTCCCATTCAAATGTTGCCTTTTCCAAAACCACCCATGGCCTACCCTGAACCCCAAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18946 DPH1::CCDC42 ENSG00000108963.19::ENSG00000161973.11 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1771 TRUE 3271 TRUE 1227 DPH1 ENSG00000108963.19 protein_coding + + chr17:2030137-2043898:+ chr17:2030230:+ chr17:1933431-1947192:+ chr17:1933524:+ CCDC42 ENSG00000161973.11 protein_coding - - chr17:8729935-8745219:- chr17:8735254:- chr17:8633253-8648537:- chr17:8638572:- chr17:2031436 chr17:8738611 NA NA chr17:1934730 chr17:8641929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 11 300 1 991 566 ENST00000674200.2 ENST00000293845.8 downstream downstream duplicates(82),mismatches(5) GGTGATGGCGGCGCTGGTCGTATCCGGGGCAGCGGAGCAGGGCGGCCGAGACGGCCCTGGCAGAG|GAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCTGCTTGGCACCATTAAGATGGCCACGCTGAACCTCTTCCAGATCGTGAGCAAGCACCTGAAGGAGGTGACTGAGGTGGCACTGGAGGACACCCACAAGCAGCTGGACATG___ATCCAGCAATTTATCCAAGACCGGTCGGACATCTGGGCAGAGGTGAAAAAGAAGGAACAACAGCGAGTCCGGATTTAAGGAGGCAGCCTTGTTCCAGAATGTCCTGAGACAGAGATCGTGAAAGAAGAAGTCGTGAGCCTGCGGTCCAGTCAGTCCAGCTCGGGACCGATGCCTGCTGTGCCTTCCTGCTGA VMAALVVSGAAEQGGRDGPGR|gislgahpehrsqedppawhh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18947 DPH1::CCDC42 ENSG00000108963.19::ENSG00000161973.11 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3271 TRUE 1227 DPH1 ENSG00000108963.19 protein_coding + + chr17:2030137-2043898:+ chr17:2030230:+ chr17:1933431-1947192:+ chr17:1933524:+ CCDC42 ENSG00000161973.11 protein_coding - - chr17:8729935-8745219:- chr17:8735611:- chr17:8633253-8648537:- chr17:8638929:- chr17:2031436 chr17:8738611 NA NA chr17:1934730 chr17:8641929 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 1 1 991 5 ENST00000674200.2 ENST00000293845.8 downstream downstream none ATCGATCGCAATGTCTGCGCTCTCCGCGTTCTTCCAGCGCTGTCTTTTTAGTACCACATGCGCAGGCAGGTGATGGCGGCGCTGGTCGTATCCGGGGCAGC...GGGCGGCCGAGACGGCCCTGGCAGAG|TTCGAGGAGATCCATGAGGTGATTGCACGCTACAAGACGCTGGTGAGCATGCGCCACGACCTCATGCAGTCTGCG...GGCCAGGAGAAGATTGAGCGCGCCAAGGCCCGGCTGGCGCGCTACATGGAGGAAAAGGATGATGAGATCCTGCAGCAAAACAATGAGCTGGCAAGGCTGC GGRDGPGR|vrgdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18948 CUL5::SLC35F2 ENSG00000166266.14::ENSG00000110660.15 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108033911:+ chr11:107879624-107978488:+ chr11:107904637:+ SLC35F2 ENSG00000110660.15 protein_coding - + chr11:107790991-107928293:- chr11:107878816:+ chr11:107661717-107799019:- chr11:107749542:+ chr11:108035594,chr11:108035590,chr11:108035639,chr11:108035591 chr11:107874779,chr11:107874776,chr11:107874681,chr11:107874773 NA NA chr11:107906320,chr11:107906316,chr11:107906365,chr11:107906317 chr11:107745505,chr11:107745502,chr11:107745407,chr11:107745499 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cullin_family(4%)| Cullin(0%)| 31 27 76 451 73 ENST00000393094.7 unknown downstream upstream duplicates(30),mismappers(4),mismatches(4),multimappers(3) TCAAGGCCTGGCCGGGAGCGCCACGAATTCTCGCGTCGTCTCGCGAGAGTCCAAGTTAAAGAACATGGCGACGTCTAATCTGTTAAAG___AATAAAGGTTCTCTTCAGTTTGAAGACAAATGGGATTTTATGCGCCCGATTGTTTTGAAGCTTTTACGCCAGGAATCTGTTACAAAACAGCAGTGGTTTGATCTGTTTTC|GGTTGTGCATTTCACTATGATGTATCTAGATGTGGATTTTTTTGCTTGGGATTTACCTGGCTTTATTGGGCTTCCTAGATCTGAATATTGATATATTATCCATGAATATTTTGATACCTGGATTACAGCTGAATTCTCCCAAAGATAAGTTACTTCTGACTGAGAGAGCTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCCCTGTGACCTGCACGAATACATCCAGATGGCCTAAAGCAACTGAAGATCCACACAAGAAGTGAAA MATSNLLKNKGSLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFs|vvhftmmyldvdffawdlpgfiglprsey* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18949 SPTBN1::NHERF2 ENSG00000115306.16::ENSG00000065054.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1772 TRUE 3272 TRUE 1228 SPTBN1 ENSG00000115306.16 protein_coding + + chr2:54456317-54671446:+ chr2:54526566:+ chr2:54683454-54898583:+ chr2:54753703:+ NHERF2 ENSG00000065054.14 protein_coding + + chr16:2025356-2039026:+ chr16:2036728:+ chr16:2075357-2089027:+ chr16:2086729:+ chr2:54540639,chr2:54540638 chr16:2036636,chr16:2036632 NA NA chr2:54767776,chr2:54767775 chr16:2086637,chr16:2086633 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |EBP50__C-terminal(100%),PDZ_domain(19%) |EBP50_C(100%),PDZ(8%),PDZ_2(19%),PDZ_6(7%) 35 28 62 614 832 ENST00000615901.4 ENST00000424542.7 downstream upstream duplicates(21),mismatches(8),multimappers(1) ACGGGACCCCGGCGCCCCCACCCCATCCCCGGGAG___AACTCTAAGAAGGAGCTGATGTGGAGGAGCAGCTGAGACAGTTCAAGATGACGACCACAGTAGCCACAGACTATGACAACATTGAGATCCAGCAGCAGTACAGTGATGTCAACAACCGCTGGGATGTCGACGACTGGGACAATGAGAACAGCTCTGCGCGGCTTTTTGAGCGGTCCCGCATCAAGGCTCTGGCAG|GTGAACGGGCAGAATGTGGAGGGACTGCGCCATGCTGAGGTGGTGGCCAGCATCAAGGCACGGGAGGACGAGGCCCGGCTGCTGGTCGTGGACCCCGAGACAGATGAACACTTCAAGCGGCTTCGGGTCACACCCACCGAGGAGCACGTGGAAG___GTCCTCTGCCGTCACCCGTCACCAATGGAACCAGCCCTGCCCAG___CTCAATGGTGGCTCTGCGTGCTCGTCCCGAAGTGACCTGCCT MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALA|geraecggtapc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18950 SPTBN1::NHERF2 ENSG00000115306.16::ENSG00000065054.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3272 TRUE 1228 SPTBN1 ENSG00000115306.16 protein_coding + + chr2:54456317-54671446:+ chr2:54526566:+ chr2:54683454-54898583:+ chr2:54753703:+ NHERF2 ENSG00000065054.14 protein_coding + + chr16:2025356-2039026:+ chr16:2036955:+ chr16:2075357-2089027:+ chr16:2086956:+ chr2:54540639,chr2:54540638 chr16:2036636,chr16:2036632 NA NA chr2:54767776,chr2:54767775 chr16:2086637,chr16:2086633 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |EBP50__C-terminal(82%) |EBP50_C(90%) 5 5 8 614 916 ENST00000615901.4 ENST00000424542.7 downstream upstream duplicates(1),mismatches(2) aCCACCCCATCCCCGGGAG___...CGCCGAGCCGCCGCTGCG?CCGCCCTTCAGCTCCTGCCACCCTCT?TTC?ACAG___AACTCTAAGAAGGAGCTGATGTGGAGGAGCAGCTGAGACAGTTCAAGATGACGACCACAGTAGCCACAGACTATGACAACATTGAGATCCAGCAGCAGTACAGTGATGTCAACAACCGCTGGGATGTCGACGACTGGGACAATGAGAACAGCTCTGCGCGGCTTTTTGAGCGGTCCCGCATCAAGGCTCTGGCAG|GTCCTCTGCCGTCACCCGTCACCAATGGAACCAGCCCTGCCCAG___CTCAATGGTGGCTCTGCGTGCTCGTCCCGAAGTGACCTGCCTGGTTCCGACAAGGACACTGAG___GATGGCAGTGCCTGGAAGCAAGATCCCTTCCAGGAGAGCGGCCTCCACCTGAGCCgCACGGCGGCCGAGGCCAAGGAGAAGGCTCGAGCCATGCGAGTCAACAAGCGCGCGCCACAGATGGA MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALA|gPLPSPVTNGTSPAQLNGGSACSSRSDLPGSDKDTEDGSAWKQDPFQESGLHLSrTAAEAKEKARAMRVNKRAPQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18951 PELP1::RAP1GAP2 ENSG00000141456.16::ENSG00000132359.17 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1773 FALSE NA FALSE NA PELP1 ENSG00000141456.16 protein_coding - - chr17:4669774-4704337:- chr17:4674809:- chr17:4573069-4607632:- chr17:4578104:- RAP1GAP2 ENSG00000132359.17 protein_coding + + chr17:2755705-3037741:+ chr17:3018061:+ chr17:2658999-2941035:+ chr17:2921355:+ chr17:4674688,chr17:4674688,chr17:4674690,chr17:4674696 chr17:3015788,chr17:3015787,chr17:3015785,chr17:3015785 NA NA chr17:4577983,chr17:4577983,chr17:4577985,chr17:4577991 chr17:2919082,chr17:2919081,chr17:2919079,chr17:2919079 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none NUC202_domain(37%),rRNA_processing/ribosome_biogenesis(100%)| NUC202(35%),RIX1(100%)| 38 35 48 999 171 ENST00000572293.7 ENST00000637138.1 upstream upstream duplicates(14),mismatches(11) CTGATCGGCCGCCTGCTTCCCCAGGTCCTCAATTCCTGGAGCATCGGTAGAGATTCCCTCTCTCCAGGCCAGGAGAGGCCTTACAG___CACGGTTCGGACCAAGGTGTATGCGATATTAGAGCTGTGGGTGCAGGTTTGTGGGGCCTCGGCGGGAATGCTTCAGGGAGGAGCCTCTGGAGAGGCCCTGCTCACCCACCTGCTCAGCGACATCTCCCCGCCAGCTGATGCCCTTAAG|AGGGCCATCCGCGTACGCAGCCACTCCATGGAGACCATGGTGGGCGGCCAGAAGAAGTCGCACAGTGGGGGCATCCCTGGCAGCCTCAGCGGGGGCATCTCCCACAACAGCATGGAGGTCACCAAGACCACCTTCTCG___CCTCCAGTGGTGGCGGCAACGGTGAAGAACCAGTCACGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCC LIGRLLPQVLNSWSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALK|RAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVAATVKNQSRSPIKRRSGLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18952 CRK::YWHAE ENSG00000167193.8::ENSG00000108953.17 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1774 TRUE 3273 TRUE 1229 CRK ENSG00000167193.8 protein_coding - - chr17:1420689-1463162:- chr17:1462953:- chr17:1323983-1366456:- chr17:1366247:- YWHAE ENSG00000108953.17 protein_coding - - chr17:1344275-1400222:- chr17:1354347:- chr17:1247569-1303516:- chr17:1257641:- chr17:1461864,chr17:1462091,chr17:1461869 chr17:1354823,chr17:1354698,chr17:1354825 NA NA chr17:1365158,chr17:1365385,chr17:1365163 chr17:1258117,chr17:1257992,chr17:1258119 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through high none |14-3-3_protein(21%) |14-3-3(16%) 27 24 43 191 7754 ENST00000572145.1 ENST00000264335.13 upstream downstream duplicates(20),mismappers(8),mismatches(13) CAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCAGGGTGGCGTGTGCCTGTAATCCCAGCTACTCGGAAGGCTGAGGCAGGAGAATCCCTTGAACCCCGGAGGCGAAGGTTACAGTGAGCCGAGATTATGCCACTGCCCTCCAGCCTGGGCGACAGAGCAAAAAAAAAAAAGAAAGTGCTTCAAGCTGCAACCACGGAGCTCGTCGTCAGCAGATGGCT|GTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACGCTGAGTGAAGAAAGCTATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTATGGACTTCAGACATGCAGGGTGACG___GTGAAGAGCAGAATAAAGAAGCGCTGCAGGACGTGGAAGACGAAAATCAGTGAGACATAAGCCAACAAGAGAAACCATCTCTGACCACCCCCTCCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon) 1 endometrial stromal sarcoma mesenchymal TSG, fusion translocation 18953 CRK::YWHAE ENSG00000167193.8::ENSG00000108953.17 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3273 TRUE 1229 CRK ENSG00000167193.8 protein_coding - - chr17:1420689-1463162:- chr17:1462223:- chr17:1323983-1366456:- chr17:1365517:- YWHAE ENSG00000108953.17 protein_coding - - chr17:1344275-1400222:- chr17:1354347:- chr17:1247569-1303516:- chr17:1257641:- chr17:1461864,chr17:1462091,chr17:1461869 chr17:1354823,chr17:1354698,chr17:1354825 NA NA chr17:1365158,chr17:1365385,chr17:1365163 chr17:1258117,chr17:1257992,chr17:1258119 NA NA sense sense unknown intron CDS/splice-site deletion/read-through medium none |14-3-3_protein(21%) |14-3-3(16%) 11 10 61 82 7754 unknown ENST00000264335.13 upstream downstream duplicates(18),inconsistently_clipped(1),mismappers(17),mismatches(12) CAGGCTGGAGTGCAATGGCACGATCTCAAAGTGGTCACTCCAAAGTGGTGGGATGACAGGCGTGAGCCACCGTGCCCAGCCTACTCTGACCTTTTGAGAGGTAACCAGGACTGGTTTGTGCCCTCAGCTCACATCCTGAGGGAAGTCCAGTGACCTCCAGGAAATATCTGCCAATTATGGGAAAAGCTAATGCTGGCTCTAGACAAGAGCTTCCGCCAGTTCTCCATTCATCCTTCCTTCATTCAACCCGGCGCTTTGGGAGGCCGAG|GTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACGCTGAGTGAAGAAAGCTATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTATGGACTTCAGACATGCAGGGTGACG___GTGAAGAGCAGAATAAAGAAGCGCTGCAGGACGTGGAAGACGAAAATCAGTGAGACATAAGCCAACAAGAGAAACCATCTCTGACCACCCCCTCCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon) 1 endometrial stromal sarcoma mesenchymal TSG, fusion translocation 18954 NAA38::VPS53 ENSG00000183011.14::ENSG00000141252.21 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1775 TRUE 3274 TRUE 1230 NAA38 ENSG00000183011.14 protein_coding - - chr17:7856685-7885238:- chr17:7883235:- chr17:7760003-7788556:- chr17:7786553:- VPS53 ENSG00000141252.21 protein_coding - - chr17:508503-721717:- chr17:661895:- chr17:411743-624957:- chr17:565135:- chr17:7869715,chr17:7869715,chr17:7869717,chr17:7869718 chr17:666284,chr17:666279,chr17:666283,chr17:666283 NA NA chr17:7773033,chr17:7773033,chr17:7773035,chr17:7773036 chr17:569524,chr17:569519,chr17:569523,chr17:569523 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Vps53-like__N-terminal_(86%) |ING(13%),Vps53_N(67%),Vps54_N(38%) 12 24 45 257 353 ENST00000570555.1 ENST00000437048.7 upstream downstream duplicates(23),mismatches(20),multimappers(11) CGCAGCCGCCACCGCCCGCCCCGACCTCCCGGACCGCCGCGGGGCCACGGGCCCGAGCCCCGGATTCGCGCTCCGGATTCGCCTCGGCTCGGCCGCGCG___TATATTTGCCTTCCCTCCATGATCTCCAACACTATCCGATAAAGTAGAAGCAACTGAGGTACCGTGAAAGAGAAAGGAGCTGGAACTGAGAAAAAGCAGAG|GCGCTTGAAGAGGCTCAGAAAGCTATCCAACAACTCTTTGGCAAAATCAAAGATATCAAAGACAAAGCTGAAAAATCAGAGCAAATG___GTGAAAGAAATCACCCGTGATATTAAGCAATTAGATCACGCCAAACGCCACCTGACCACCTCAATCACCACACTGAACCACCTGCACATGCTGGCAGGAGGTGTCGACTCCCTCGA___AGCCATGACCAGGCGAAGACAATACGGAGAAGTTGCTAATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18955 NAA38::VPS53 ENSG00000183011.14::ENSG00000141252.21 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3274 TRUE 1230 NAA38 ENSG00000183011.14 protein_coding - - chr17:7856685-7885238:- chr17:7883235:- chr17:7760003-7788556:- chr17:7786553:- VPS53 ENSG00000141252.21 protein_coding - - chr17:508503-721717:- chr17:655953:- chr17:411743-624957:- chr17:559193:- chr17:7869715,chr17:7869715,chr17:7869717,chr17:7869718 chr17:666284,chr17:666279,chr17:666283,chr17:666283 NA NA chr17:7773033,chr17:7773033,chr17:7773035,chr17:7773036 chr17:569524,chr17:569519,chr17:569523,chr17:569523 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Vps53-like__N-terminal_(79%) |ING(0%),Vps53_N(63%),Vps54_N(30%) 2 1 27 257 323 ENST00000570555.1 ENST00000437048.7 upstream downstream duplicates(12),mismatches(1),multimappers(2) GGGGGCCCTGGCTTCGCCTTGGCCGTTTCCTGCCTACCCCCTCCCCGCCGAGG___...GCCACCGCCCGCCCCGACCTCCCGGACCGCCGCGGGGCCACGGGCCCGAGCCCCGGATTCGCGCTCCGGATTCGCCTCGGCTCGGCCGCGCG___TATATTTGCCTTCCCTCCATGATCTCCAACACTATCCGATAAAGTAGAAGCAACTGAGGTACCGTGAAAGAGAAAGGAGCTGGAACTGAGAAAAAGCAGAG|GTGAAAGAAATCACCCGTGATATTAAGCAATTAGATCACGCCAAACGCCACCTGACCACCTCAATCACCACACTGAACCACCTGCACATGCTGGCAGGAGGTGTCGACTCCCTCGA___AGCCATGACCAGGCGAAGACAATACGGAGAAGTTGCTAATCTCCTTCAGGGTGTGATGAATGTCCTGGAGCACTTCCACAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18956 CCDC144BP::ENSG00000266877 ENSG00000291090.1::ENSG00000266877.1 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3275 TRUE 1231 CCDC144BP ENSG00000291090.1 lncRNA - - chr17:18537800-18625653:- chr17:18625104:- chr17:18441114-18528966:- chr17:18528417:- ENSG00000266877 ENSG00000266877.1 lncRNA + + chr17:31583162-31637543:+ chr17:31632061:+ chr17:29910181-29964562:+ chr17:29959080:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site intron inversion high none none none 14 10 44 209 92 ENST00000618081.6 unknown upstream upstream duplicates(11),mismatches(2) CGAAGCTGGCAGTCTACGCCACGAGGAAGACCCGTAGCGTCAGGAGCCAGGAGGACCAGTGGTACTTGGGCTACCCGGGGGACCAGTGGTCTTCGGGCTTCTCCTACAGCTGGTGGAAAAATAGCGTCGGCAGCGAGAGCAAGCACGGTGAGGGCGCCTTAGACCAGCCCCAGCACGACGTCCGCCTGGAAGATCTTGGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGGGGTGGAGCACGTCTTGGCTCCTGGAGACACTGGCGTGGACAAGAGGGATAGGAAGAAGAG|CAAAGAATTTGCCAAGTCACTCAGGGTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCTCTGTGACCAGATGGCCTGAAGCAACTGAAGATCCACAAAATAAGTGAAAATAGCCTGAACTGATGGCATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATACAATATATTCTCCCCCACCCTTAAGAAGGTACTTTGTAATATTCTCCCCACCCTTGAGAATGTCCTTTGTACGCCTATCCCAAACCTGTAAGAACTAATGATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18957 CCDC144BP::ENSG00000266877 ENSG00000291090.1::ENSG00000266877.1 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3275 TRUE 1231 CCDC144BP ENSG00000291090.1 lncRNA - - chr17:18537800-18625653:- chr17:18625104:- chr17:18441114-18528966:- chr17:18528417:- ENSG00000266877 ENSG00000266877.1 lncRNA + + chr17:31583162-31637543:+ chr17:31637385:+ chr17:29910181-29964562:+ chr17:29964404:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 6 0 3 209 15 ENST00000618081.6 ENST00000578650.1 upstream upstream duplicates(1) CTTGGCTTGGCGGTGGTCGCTTGGCTTGGCGTGGCAGTGATCGCTTGGCTTGGCATTTCTGGCTTGGCGGTCCTCCTTTCGCAGATTGGAAACCGCGGGCT...GGCAGTCTACGCCACGAGGAAGACCCGTAGCGTCAGGAGCCAGGAGGACCAGTGGTACTTGGGCTACCCGGGGGACCAGTGGTCTTCGGGCTTCTCCTACAGCTGGTGGAAAAATAGCaTCGGCAGCGAGAGCAAGCACGGTGAGGGCGCCTTAGACCAGCCCCAGCACGACGTCCGCCTGGAAGATCTTGGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGGGGTGGAGCACGTCTTGGCTCCTGGAGACACTGGCGTGGACAAGAGGGATAGGAAGAAGAG|GCAAGAATCAACAATCAATTTGGATACCATCAAGACACCTGAAACCTTATCATGAGCC...CTGAGGAAGAGATTCCGGGGGGGATCCCCCAGTTGCAGTCATGTCAAGACTGATGCTGAGGAGGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCTACCTGGGGACAgATCgAGAAGCTGTCACAGACGGTGGAAGAAAACCTGAGGAAAGCAGGACAACCAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18958 AKAP10::ENSG00000266313 ENSG00000108599.15::ENSG00000266313.2 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AKAP10 ENSG00000108599.15 protein_coding - - chr17:19904302-19978343:- chr17:19977592:- chr17:19807615-19881656:- chr17:19880905:- ENSG00000266313 ENSG00000266313.2 lncRNA + - chr17:27333241-27352828:+ chr17:27340271:- chr17:25660267-25679854:+ chr17:25667297:- chr17:19975231,chr17:19975231,chr17:19975239 chr17:27348739,chr17:27348740,chr17:27348723 NA NA chr17:19878544,chr17:19878544,chr17:19878552 chr17:25675765,chr17:25675766,chr17:25675749 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 25 7 32 253 141 ENST00000225737.11 unknown upstream downstream duplicates(17),mismatches(10) CTTGTTGATAATATGGCGGCTGGAGCTGCCTGGGCATCCCGAGGAGGCGGTGGGGCCCACTCCCGGAAGAAGGGTCCCTTTTCGCGCTAGTGCAGCGGCCCCTCTGGACCCGGAAGTCCGGGCCGGTTGCTGAATGAGGGGAGCCGGGCCCTCCCCGCGCCAGTCCCCCCGCACCCTCCGTCCCGACCCGGGCCCCGCCATGTCCTTCTTCCGGCGGAAAG|ATATTTTTTGCATGTCTGACACCCATGACTCCACCTGGACCTGATGACTCCTGTGGCCCCACCCAGGAGTGACTCAGCTCAACACAACAGCTTTGACCCCCTCTGAGTTCATCTCCACTCCAACCAATCAGCAGCAAGCACCCATTGGCTGGCCACCCCCACCCCTTACCCAAACTGCCTTTGAGCCTTGGAGATTGATATGAGT MRGAGPSPRQSPRTLRPDPGPAMSFFRRK|difcmsdthdstwt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18959 CCDC144BP::ENSG00000266877 ENSG00000154874.18::ENSG00000266877.1 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3276 TRUE 1232 CCDC144BP ENSG00000154874.18 transcribed_unprocessed_pseudogene - - chr17:18542155-18625447:- chr17:18625104:- chr17:18445469-18528760:- chr17:18528417:- ENSG00000266877 ENSG00000266877.1 lncRNA + + chr17:31583162-31637543:+ chr17:31632061:+ chr17:29910181-29964562:+ chr17:29959080:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site intron inversion high none none none 11 10 40 209 92 ENST00000285176.13 unknown upstream upstream duplicates(10),mismatches(2) TGGCAGTCTACGCCACGAGGAAGACCCGTAGCGTCAGGAGCCAGGAGGACCAGTGGTACTTGGGCTACCCGGGGGACCAGTGGTCTTCGGGCTTCTCCTACAGCTGGTGGAAAAATAGCGTCGGCAGCGAGAGCAAGCACGGTGAGGGCGCCTTAGACCAGCCCCAGCACGACGTCCGCCTGGAAGATCTTGGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGGGGTGGAGCACGTCTTGGCTCCTGGAGACACTGGCGTGGACAAGAGGGATAGGAAGAAGAG|CAAAGAATTTGCCAAGTCACTCAGGGTGTCAGGCCTCTGAGCCCAAGCTAAGCCATCATATCCTCTGTGACCAGATGGCCTGAAGCAACTGAAGATCCACAAAATAAGTGAAAATAGCCTGAACTGATGGCATTCCACCATTGTGATTTGTTCCTGCCCCACCCTAACTGATACAATATATTCTCCCCCACCCTTAAGAAGGTACTTTGTAATATTCTCCCCACCCTTGAGAATGTCCTTTGTACGCCTATCCCAAACCTGTAAGAACTAATGATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18960 CCDC144BP::ENSG00000266877 ENSG00000154874.18::ENSG00000266877.1 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3276 TRUE 1232 CCDC144BP ENSG00000154874.18 transcribed_unprocessed_pseudogene - - chr17:18542155-18625447:- chr17:18625104:- chr17:18445469-18528760:- chr17:18528417:- ENSG00000266877 ENSG00000266877.1 lncRNA + + chr17:31583162-31637543:+ chr17:31637385:+ chr17:29910181-29964562:+ chr17:29964404:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 4 0 2 209 15 ENST00000285176.13 ENST00000578650.1 upstream upstream duplicates(1) GGCAGTCTACGCCACGAGGAAGACCCGTAGCGTCAGGAGCCAGGAGGACCAGTGGTACTTGGGCTACCCGGGGGACCAGTGGTCTTCGGGCTTCTCCTACAGCTGGTGGAAAAATAGCaTCGGCAGCGAGAGCAAGCACGGTGAGGGCGCCTTAGACCAGCCCCAGCACGACGTCCGCCTGGAAGATCTTGGCGAGCTCCACAGAGCTGCCCGGTCGGGCGACGTCCCTGGGGTGGAGCACGTCTTGGCTCCTGGAGACACTGGCGTGGACAAGAGGGATAGGAAGAAGAG|GCAAGAATCAACAATCAATTTGGATACCATCAAGACACCTGAAACCTTATCATGAG...GTCAAGACTGATGCTGAGGAGGACCCCAACTGTCACGAGCAACACCTGTCAAACACAGCCACCTACCTGGGGACAgATCgAGAAGCTGTCACAGACGGTGGAAGAAAACCTGAGGAAAGCAGGACAACCAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18962 ZNF586::ENSG00000286125 ENSG00000083828.16::ENSG00000286125.3 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57769878:+ chr19:58281023-58331307:+ chr19:58281246:+ ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56789928:+ chr19:57181309-57334763:+ chr19:57301296:+ chr19:57772774,chr19:57772775 chr19:56780313,chr19:56780311 NA NA chr19:58284142,chr19:58284143 chr19:57291681,chr19:57291679 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 12 5 18 172 64 ENST00000599802.1 ENST00000652504.1 downstream upstream duplicates(3),mismatches(2) GGTCCATCCGGCGATGCTGGGTCTGGACGAGCTCGGGAGGAGTGGTTGTGGCCATTGCACACAGGCGGATCTGAGGTTCGGCGACGCCGCTGGTCGCGACCCGGGACAGGACAACGACAGGAACACCGCCGAGCCCGCGTTCCCCCCCCGCCCAGAGTCATGGCGGCAGCAGCCGCTCTGAGGGCGCCTGCTCAG|GGACAGAGTCCTGAGCAAGGAAACCTAGAAGGGAGAGAGGAATACCATGGAATTGAGTCCTGTCTGGTAGCACTGACAGACACAGTGGCCAGCCACCCTCATGCCACCCTGTCCTGCCATGGGAAGGAACAGCAGCTCTAGAGTTCCTATGGTGAGAAAGTCAGATATCAT...___GGAACTCTCTTTCCTTCTCACTGAACTCTAGCTTCATCAATAACTCAGTGCCTCTGGCCAAGTTTTT MAAAAALRAPAQ|gqspeqgnlegreeyhgiesclvaltdtvashphatlschgkeqql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18963 ZMYM4::ARL15 ENSG00000146463.12::ENSG00000185305.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1777 TRUE 3277 TRUE 1233 ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35361789:+ chr1:35734310-35887659:+ chr1:35827390:+ ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54113410:- chr5:53179772-53606412:- chr5:53409240:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |ADP-ribosylation_factor_family(67%) |Arf(79%),Ras(79%),Roc(0%),SRPRB(79%) 5 14 11 315 132 ENST00000314607.11 ENST00000504924.6 downstream downstream duplicates(1),mismappers(1),mismatches(1) CAAACCCCAGAAACAAACTTTAGG___GATTCCAGCTACCCATTTGCCAATAAAGAATCCATTGGTTCGGAACTGGGGAATTCCTTTGCATCAAATATTAGAATTAAAGAAGAACCTTTGGATGATGAGTATGACAAAGCAATGGCACCACAGCAGGGACTACTAGACAAAATAAAAGATGAACCTGACAATGCTCAA|GGGCTGATAACATCCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGCTCAGTACAAGAGGTATGTCTCATTAGCATGACAACTCTTTGTCTTCCTTGCTTGTACTTTTGCTGCC...___ATCAAAAAATATTTTGAACTTGAACCACTTGCACGTGGAAAACGCTG...CTACAGCCCTGCTCACTGGATGACATGGATGCACTGAAAGACAGCTTCTCTCAGCTGATTAATTTGTTAGAAGAAAAAGACCATGAAGCTGTAAGAATGTGA QTPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAMAPQQGLLDKIKDEPDNAQ|glitsgntgaattkdlkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-581 chr5:53951504-53951599:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18964 ZMYM4::ARL15 ENSG00000146463.12::ENSG00000185305.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3277 TRUE 1233 ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325405:+ chr1:35734310-35887659:+ chr1:35791006:+ ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54113410:- chr5:53179772-53606412:- chr5:53409240:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |ADP-ribosylation_factor_family(67%) |Arf(79%),Ras(79%),Roc(0%),SRPRB(79%) 2 9 4 418 132 ENST00000314607.11 ENST00000504924.6 downstream downstream duplicates(1),mismappers(1),mismatches(1) AGGTACCGCCGCCACCGCGCGGGGAGCCGCAGCGGTTCCGAGCGGGGCCCAACATGGCGGAGAGAGAGGTGGAGTCCGGCCCCCGAAAGAGG___TTTGAACAAAAAAGTGGTGCAGTTTTTGATGAAATTGTAGAGAACT|GGGCTGATAACATCCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGCTCAGTACAAGAG___ATCAAAAAATATTTTGAACTTGAACCACTTGCACGTGGAAAACGCTGGATTCTACAGCCCTGCTCACTGGATGACATGGATGCACTGAAAGACAGCTTCTCTCAGCTGATTAATTTGTTAGAAGAAAAAGACC MAEREVESGPRKRFEQKSGAVFDEIVEN|wADNIRKYWSRYYQGSQGVIFVLDSASSEDDLEAARNELHSALQHPQLCTLPFLILANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEEKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-581 chr5:53951504-53951599:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18965 ZMYM4::ARL15 ENSG00000146463.12::ENSG00000185305.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3277 TRUE 1233 ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35359446:+ chr1:35734310-35887659:+ chr1:35825047:+ ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54113410:- chr5:53179772-53606412:- chr5:53409240:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |ADP-ribosylation_factor_family(67%) |Arf(79%),Ras(79%),Roc(0%),SRPRB(79%) 1 1 8 283 132 ENST00000314607.11 ENST00000505630.5 downstream downstream mismatches(1) GTAGAGAGAAGAGTCACACAGCATGAATCAGACAATGAAAATGAAATACAAATTCAAAATAAGTTAAAAAAAGACTTTCCTAAACAATTTGATCAGGTTTCTGTCTTTAAATCAATACGGAAAGATTTTAGTCTAGTAAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATGAACGTGAAAAACGGTTGGATAAACCCCATAAAGATTTGGATTCAAGGTTGAAAAGCAGTTTTTTTGATAAAGCAG|GGGCTGATAACATCCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGCTCAGTACAAGAGGTATGTCTCATTAGCATGACAACTCTTTGTCTTCCTTGCTTGTACTTTTGCTGCCAC VERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYEREKRLDKPHKDLDSRLKSSFFDKA|gadnirkywsryyqgsqgvifvldsasseddleaarnelhsalqhpqlctlpflilanhqdkpaarsvqevclismttlclpclyfcc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-581 chr5:53951504-53951599:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18966 ARL15::ZMYM4 ENSG00000185305.12::ENSG00000146463.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3278 TRUE 1234 ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54154580:- chr5:53179772-53606412:- chr5:53450410:- ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35370029:+ chr1:35734310-35887659:+ chr1:35835630:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none ADP-ribosylation_factor_family(32%)|Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) Arf(6%),Ras(6%),Roc(29%),SRPRB(6%)|DUF3504(100%),zf-FCS(100%) 2 1 4 86 402 ENST00000504924.6 ENST00000314607.11 upstream upstream duplicates(2) CTGCTTTCGGCTATTTTCGCTGTTGCTGGCTTTTTCAGGAGCTGCTCGCTCGCAGCCAGAGACGCTGCTTTTTTTTTCCGGGTTCGGAGCCGTTCCGGATGCTTTAGGCTGCCGGATGTCTGATCTCCGgATAACTG...CGTCGTGTCGACCACAG___GTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAG|GAGTATAGTCATGGCCAACAGCAAAAAACTCAAGAGGGGGAACTGAAAATTAGTGCTGTGTTTTCAGTCAGTGGCAGCCCTCTTG___CTCCACAGTTGACTACTGGCTT...ACTAGTAAAGATTTTTGCAGTCAGTCATGTTTGTCAACATATGAACTGAAAAAAAAACCTATTGTTACCATAAATACAAATAGTATTTCAACCAAATGCAG VVSTTGFSIKAVPFQNAILNVKELG|gv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18967 ARL15::ZMYM4 ENSG00000185305.12::ENSG00000146463.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3278 TRUE 1234 ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54154580:- chr5:53179772-53606412:- chr5:53450410:- ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35381259:+ chr1:35734310-35887659:+ chr1:35846860:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none ADP-ribosylation_factor_family(32%)|Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(75%) Arf(6%),Ras(6%),Roc(29%),SRPRB(6%)|DUF3504(100%),zf-FCS(10%) 1 0 2 86 667 ENST00000504924.6 ENST00000314607.11 upstream upstream none CTTTTTCAGGAGCTGCTCGCTCGCAGCCAGAGACGCTGC[t]TTTTTTTTTCCGGGTTCGGAGCCGTTCCGGATGCTTTAGGCTGCCGGATGTCTGATCTCCG...CGTGTCGACCACAG___GTTTTAGTATTAAAGCAGTGCCATTCCAGAATGCCATCTTGAATGTAAAAGAACTTGGAG|AGACATTTTAAATCCAAAGGATGTGAT...TTTGCAGTCAGTCATGTTTGTCAACATATGAACTGAAAAAAAAACCTATTGTTACCATAAATACAAATAGTATTTCAACCAAATGCAGCATGTGTCAGAAGAATGCTGTT___ATTCGACATGAAGTTAAT VSTTGFSIKAVPFQNAILNVKELG|etf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18968 SMG6::MYO15A ENSG00000070366.14::ENSG00000091536.20 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1778 TRUE 3279 TRUE 1235 SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2188399:- chr17:1963133-2207079:- chr17:2091693:- MYO15A ENSG00000091536.20 protein_coding + + chr17:18108756-18179802:+ chr17:18124483:+ chr17:18012070-18083116:+ chr17:18027797:+ chr17:2188028 chr17:18116816 NA NA chr17:2091322 chr17:18020130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Est1_DNA/RNA_binding_domain(69%),Telomerase_activating_protein_Est1(100%)|FERM_central_domain(100%),IQ_calmodulin-binding_motif(100%),MyTH4_domain(100%),Myosin_head_(motor_domain)(100%),Variant_SH3_domain(100%) EST1(100%),EST1_DNA_bind(86%)|IQ(100%),MyTH4(100%),Myosin_head(100%),SH3_2(100%) 11 7 10 148 49 ENST00000263073.11 ENST00000647165.2 upstream upstream duplicates(8),mismappers(1) CGGATTGG___GATGGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTCAAGGAGTTCCAGGTGTTACTGCAGCACAGCCCCTCTCCCATTGGAAGTACCCGCATGCTGCAGCTTATGACCATCAATATGTTTGCAGTACACAACTCCCAGCTGAAAG___ACTGCTTCTCGGAGGAGTGCCGCTCTGTGATCCAGGAACAAGCCGCAGCTCTGGGCTTGGCCATGTTTTCTCTACTGGTCCGCCGCTGCACCTGCTTACTTAAGGAGTCCGCCAAAG|ATGCACTCCATCCGCAACCTGCCATCCATGCGGTTCCGTGAGCAGCACGGGGAGGATGGTGTGGAGGACATGACACAGCTGGA___AGACCTCCAGGAAACCACTGTGCTGTCCAACCTCAAGATTAGATTTGAACGGAACCTCATCTAC RIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAK|dalhpqpaihavp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18969 SMG6::MYO15A ENSG00000070366.14::ENSG00000091536.20 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3279 TRUE 1235 SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2188399:- chr17:1963133-2207079:- chr17:2091693:- MYO15A ENSG00000091536.20 protein_coding + + chr17:18108756-18179802:+ chr17:18118582:+ chr17:18012070-18083116:+ chr17:18021896:+ chr17:2188028 chr17:18116816 NA NA chr17:2091322 chr17:18020130 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Est1_DNA/RNA_binding_domain(69%),Telomerase_activating_protein_Est1(100%)|FERM_central_domain(100%),IQ_calmodulin-binding_motif(100%),MyTH4_domain(100%),Myosin_head_(motor_domain)(100%),Variant_SH3_domain(100%) EST1(100%),EST1_DNA_bind(86%)|IQ(100%),MyTH4(100%),Myosin_head(100%),SH3_2(100%) 2 5 21 148 9 ENST00000263073.11 ENST00000647165.2 upstream upstream duplicates(6),mismatches(1),multimappers(1) CTGCAGCACAGCCCCTCTCCCATTGGAAGTACCCGCATGCTGCAGCTTATGACCATCAATATGTTTGCAGTACACAACTCCCAGCTGAAAG___ACTGCTTCTCGGAGGAGTGCCGCTCTGTGATCCAGGAACAAGCCGCAGCTCTGGGCTTGGCCATGTTTTCTCTACTGGTCCGCCGCTGCACCTGCTTACTTAAGGAGTCCGCCAAAG|GGTGAAACCCAAGGCGCTCTAGAGGAGATGAATTATGGATCCGCCCTCCCGGAATCCTGGCTCGGCCCTCCCCACGCCACCCAGGGCCAGTCGGGTCTGCTCACAGCCCGAGGAGGCCGCGTGTCCAGCCGCGGGCAAGAGACAGAGCAGGTCCCTGTGTCTCCAAGTCCCTGAGCCCGTGACACCGGCCCCAGGCCCTGTAGAGAGCAGGCAGCCACCATGGCGAAGGAGGAAGATGAGGAGAAGAAAG...AAGGGAAGAAGGGGAAGAAGGCACCGGAGCCGGAGAAGCCCAAACGGAGCCTGAAGGGGACGTCGCGGCTGTTCATGGGCTTCCGCGACCGTACACCCAAG LQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAK|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18976 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 1 18 37 11 ENST00000641991.1 ENST00000501396.5 upstream downstream duplicates(4),mismatches(2) CTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18977 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127197475:- chr8:128084939-128239786:- chr8:128209720:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 18 12 11 ENST00000641912.1 ENST00000501396.5 upstream downstream duplicates(4),mismatches(2) CATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG...CACAATGATGGAAGGCTTCCTAAAGAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18978 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 3 9 74 11 ENST00000641496.2 ENST00000501396.5 upstream downstream duplicates(6),mismatches(2) CATCATTACCAGCTGCCGTGTTAAGCATTGCGAAAACGCTCACGATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATC...GGTCTGATGTGTTGCAAGATGTGAACTTATTAAGGCATCACAGAGGCAACTCCCAGCGGGGGTGGAGGAGAGCAGCAGGGATGGAAAGGAAGAAGACTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18979 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127202042:- chr8:128084939-128239786:- chr8:128214287:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 12 10 745 ENST00000641912.1 ENST00000502082.5 upstream downstream duplicates(3),mismatches(1) GGtAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGC...AGTGATCCATTTTGCAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18980 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 12 37 745 ENST00000641991.1 ENST00000502082.5 upstream downstream duplicates(3),mismatches(1) CTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAG...GATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18981 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3281 TRUE 1236 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127192010,chr8:127192018 chr8:127331045,chr8:127331050 NA NA chr8:128204255,chr8:128204263 chr8:128343290,chr8:128343295 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 3 6 74 745 ENST00000641496.2 ENST00000523825.2 upstream downstream duplicates(3),mismatches(1) TGGGATTCTTCACCCACTCCCTTCTTCTAGATTAGCAATGCCCTGTTAAGTAAACGAACACGAAATTCAAAGGGAAACAGGAGCAATCATCATTACCAGCT...GCGAAAACGCTCACGATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGGGTGGCTGTTATGTAGCAGTAGATAATTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18982 KRBA2::LRRC37B ENSG00000184619.8::ENSG00000185158.13 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KRBA2 ENSG00000184619.8 protein_coding - - chr17:8356902-8376704:- chr17:8369787:- chr17:8260220-8280022:- chr17:8273105:- LRRC37B ENSG00000185158.13 protein_coding + + chr17:32007383-32053504:+ chr17:32017972:+ chr17:30334402-30380523:+ chr17:30344991:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS 5'UTR/splice-site inversion high none KRAB_box(100%)|LRRC37A/B_like_protein_1_C-terminal_domain(100%),Leucine-rich_repeat-containing_protein_37_family(100%),Leucine_rich_repeat(100%) KRAB(100%)|LRRC37(100%),LRRC37AB_C(100%),LRR_5(100%),LRR_8(100%) 2 2 15 200 87 ENST00000649935.1 ENST00000543378.7 upstream upstream duplicates(3),mismatches(1) CTACTCATGGAGAACGTGATCGAATACGGaATTATGTACATAAGGAAGAGTTGTTTGATATTCTTCATGATACACATCTCAGTATTGGACATGGTGGGCGGACACGCATGCTCAAGGAGCTGCAAGGAAAATATGGGAATGTCACCAAAGAAGTTATTGTCTTATATCTGACTCTGTGTAAACAGTGCCACCAGAAGAACCCAGTACCCAAGAGAGGCCTTGCACCAAAGCCCATGACTTTTAAGGACATAGACTCCACATGCCAAGTTGAAATACTTGACATGCAGTCCAGTGCCGATG|AAAGTGGTAAAATAGCTGTGGAGTGCAGACCCAGTGAAGAGATTGTAGATGTCAGATGGGAAGAACTACACAGTTTAATTCAA___GTCAGTTGCTCTCCCCTGAAGGAAGAGTATTCTCGGATTTCACCTCAGAGGAGGAAGAATTCAGGCTGCCAGAACTGG...AAGGCCAG___ATGTCAGCCCTGCCTCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAGAGCCG THGERDRIRnYVHKEELFDILHDTHLSIGHGGRTRMLKELQGKYGNVTKEVIVLYLTLCKQCHQKNPVPKRGLAPKPMTFKDIDSTCQVEILDMQSSAD|esgkiavecrpseeivdvrweelhsliqvscsplkeeysrispqrrknsgcqn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18988 SYCP2L::CASC15 ENSG00000153157.14::ENSG00000272168.10 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3283 TRUE 1237 SYCP2L ENSG00000153157.14 protein_coding + + chr6:10886831-10979320:+ chr6:10942746:+ chr6:10887064-10979553:+ chr6:10942979:+ CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:22205185:+ chr6:21664415-22654684:+ chr6:22205414:+ chr6:10945840 chr6:22132815 NA NA chr6:10946073 chr6:22133044 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Synaptonemal_complex_2_Spt16M-like_domain(100%),Synaptonemal_complex_2_armadillo-repeat-like_domain(100%)| SYCP2_ARLD(100%),SYCP2_SLD(100%)| 7 3 7 97 27 ENST00000283141.11 ENST00000652000.1 downstream upstream duplicates(3),multimappers(1) GCAAAATAACACCACATCTCCAAAGACTTCTGAACAAAAATTCCAAGATAGTTTTGCTTTTTTGACTGCTGAAGATTCTGCCCAGAAAACAG___AGCTTCAAGATCCTCACTCACTGAGTGAGCTCTCTTCCTTGAAGCACTCAGAAGATGAAGAAAAACCTAAG___ATTGTGAACCAAGAATCACTAACAGAAAGTACTAGCTTGAAACATAAGCTGAGAAACTTGGAAGACAAAG|TTTGTTAGACTTTGGATGGTGGAGACCTGTGCCTGCTACTTCTCTCATCTCCTGATACCTAATGCATAGTGTTCA___CTGCCTTTTCAGAAGGCAATAAAAAGGGTTTGTTCGATTTCTCTCTTCTGGATCTTCTGGATTATCA QNNTTSPKTSEQKFQDSFAFLTAEDSAQKTELQDPHSLSELSSLKHSEDEEKPKIVNQESLTESTSLKHKLRNLEDK|vc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18989 SYCP2L::CASC15 ENSG00000153157.14::ENSG00000272168.10 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3283 TRUE 1237 SYCP2L ENSG00000153157.14 protein_coding + + chr6:10886831-10979320:+ chr6:10942746:+ chr6:10887064-10979553:+ chr6:10942979:+ CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:22214307:+ chr6:21664415-22654684:+ chr6:22214536:+ chr6:10945840 chr6:22132815 NA NA chr6:10946073 chr6:22133044 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Synaptonemal_complex_2_Spt16M-like_domain(100%),Synaptonemal_complex_2_armadillo-repeat-like_domain(100%)| SYCP2_ARLD(100%),SYCP2_SLD(100%)| 1 0 0 97 34 ENST00000283141.11 ENST00000688254.1 downstream upstream duplicates(1) GAAAGACCAA___GCTAAGCTTCTATCACCATCAGAGAAAGAAATAaCCGAGCAAAATAACACCACATCTCCAAAGACTTCTGAACAAAAATTCCAAGATAGTT...AGAAAGTACTAGCTTGAAACATAAGCTGAGAAACTTGGAAGACAAAG|GGCACCGAGGAAGAGAACCAATGGCAGAGGCCACATGTGCAAGCAAGATGGGAG ESTSLKHKLRNLEDK|ghrgrepmaeatcaskmg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18993 RPH3AL::RHOT1 ENSG00000181031.16::ENSG00000126858.19 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:319420:- chr17:62180-236045:- chr17:169211:- RHOT1 ENSG00000126858.19 protein_coding + - chr17:32142454-32253374:+ chr17:32169838:- chr17:30469473-30580393:+ chr17:30496857:- chr17:311713,chr17:311719 chr17:32190096,chr17:32190099 NA NA chr17:161504,chr17:161510 chr17:30517115,chr17:30517118 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none FYVE-type_zinc_finger(63%)| FYVE_2(2%)| 3 2 10 220 20 ENST00000323434.12 unknown upstream downstream duplicates(2),mismappers(1),mismatches(6) CGGAGGTGGAGGCCATCCTGCAGGTCATCCAGAGGGCAGAGCGGCTCGACGTCCTGGAGCAGCAGAGAATCGG___GCGGCTGGTGGAGCGGCTGGAGACCATGAGGCGGAATGTGATGGGGAACGGCCTGTCCCAGTGTCTGCTCTGCGGGGAGGTGCTGGGCTTCCTGGGCAGCTCGTCGGTGTTCTGCAAAGACTGCAGGAAG|GGACAGGGTTTCGTCATGTCGCCCAGGATGGTCTCAAACTCCTTGACTCAAGCAATCCACCTGCCTC?GCTTCGCAAAGTGCTGGGATTACAGGTGTGAGCCACCACACCTGGCCCTAAGTTTTCACTTTTATAAACAATGCAACAATTAGT...TTTCTACAGAATAAATTCCTAGAAGTAGAACTCAAGTTAGTGCACAAGATCTTTTTTATTTTTAACTGATGTTGTTAAATTATCTCCAAAAACGAATAAACC EVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRK|gqgfvmsprmvsnsltqaihlp?lrkvlglqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18997 ZNF217::SIGLEC5 ENSG00000171940.14::ENSG00000268500.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF217 ENSG00000171940.14 protein_coding - - chr20:53567071-53609907:- chr20:53608354:- chr20:52183610-52226446:- chr20:52224893:- SIGLEC5 ENSG00000268500.7 protein_coding - - chr19:51610960-51630401:- chr19:51612422:- chr19:52114213-52133654:- chr19:52115675:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 4 4 3 536 8 ENST00000540425.1 ENST00000683636.1 upstream downstream duplicates(2),mismatches(1) CTACCTGGAGCCCGTCGGTTTCACCTCTTCTGCGG?GGGGTCGTCCGCAGTTGCCCTCTCTTTCCTCCTAGGCCTGGCTCGACCTCCACTTTGGAGAAGATGCTCCAGGAACACTGAAGGGCAGGTCGTCCCCGACCTTCTATGAGGATTGCCCAGCTCAAG|GGTTCCAGGAAGAAGCCCTGGCCAGACAGCCCCGGAGATCAAGCATCTCCTCCTGGGGATGCCCCTCCCTTGGAAGAACAAAAGGAGCTCCATTATGCCTCCCTTAGTTTTTCTGAGATGAAGTCGAGGGAGCCTAAGGACCAGGAGGCCCCAAGCACCACGGAGTACTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18998 ZNF649::SIGLEC5 ENSG00000198093.11::ENSG00000268500.7 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF649 ENSG00000198093.11 protein_coding - - chr19:51889235-51905040:- chr19:51896472:- chr19:52392488-52408293:- chr19:52399725:- SIGLEC5 ENSG00000268500.7 protein_coding - + chr19:51610960-51630401:- chr19:51613925:+ chr19:52114213-52133654:- chr19:52117178:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none KRAB_box(100%)| KRAB(100%)| 5 2 3 160 13 ENST00000354957.8 unknown upstream upstream duplicates(1),mismatches(1) TTCAGGGAATTTAGGTGTAGCCAGAAGAAAATCAG___GTCCTGGCTCCCCAGAAGCAAGAGAGTTCAAATGAAGGAAGGAGGAGGTTCCTGGATGTGGATGTCATCATTTCTGGGAACACTCTTAAATG...CAGATTTCTTAGCCAAAATTTAGGGAGGATCCAGAAGAAACCAAAGACGAAGCATCCCAGTTCTTGGGTATTTCCTGAAACAGAAGAAAATGACAAAGGCC...CCTGGAGGATGTGGCTGTGGACTTCACCTGGGAGGAGTGGCAGTTCCTGAGCCCTGCTCAGAAGGACCTGTACCGGGATGTGATGTTGGAGAACTACAGCAACCTTGTGTCAGTGG___GGTATCAAGCCGGCAAACCTGATGCCCTCACCAAGTTGGAACAAGGAGAACCACTATGGACACTAGAAGATGAAATCCACAGTCCAGCCCACCCAG|GTTACAAGGTGTCTTATGTGCAAACCAGAAAAGAGATGGCAATTCTGATCCTGGACCCAGTTTCCATGAAAGAGAAACAAAATGGAGCAGATCCTGTCCCCAGCAAAGATGGTAACCAGATACAAGTAAGCAATTTCTTTCCTCTCCCACCTTCACCCATATCCC...AATCCTGGCTCACTGCAGCCTCAACCTCCATGATCAAGTGATCCTCCTGCCTCAGACTCCTGAGCATCTGGAACCACAAGCACACATCACCACCTCTGGCC LEDVAVDFTWEEWQFLSPAQKDLYRDVMLENYSNLVSVGYQAGKPDALTKLEQGEPLWTLEDEIHSPAHP|gykvsyvqtrkemailildpvsmkekqngadpvpskdgnqiqvsnffplppspis NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 18999 ERBB4::LINC00630 ENSG00000178568.16::ENSG00000223546.9 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3286 TRUE 1238 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:211947430:- chr2:212240442-213403565:- chr2:212812155:- LINC00630 ENSG00000223546.9 lncRNA + + chrX:102769158-102885406:+ chrX:102884143:+ chrX:102024086-102140334:+ chrX:102139071:+ chr2:211832544,chr2:211832548 chrX:102866554,chrX:102866550 NA NA chr2:212697269,chr2:212697273 chrX:102121482,chrX:102121478 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Receptor_L_domain(37%)| Recep_L_domain(51%)| 3 2 4 207 244 ENST00000436443.5 ENST00000440496.5 upstream upstream duplicates(1),low_entropy(2) CTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAGTACTATGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG___TCTGTTCGAGAAGTCACAGGCTACG...TCTTAATCAGTTTCGTTACCTGCCTCTGGAGAATTTACGCATTATTCGTGGGACAAAACTTTATGAGGATCGATATGCCTTGGCAATATTTTTAAACTACAGAAAAGATGGAAACTTTGGACTTCAAGAACTTGGATTAAAGAACTTGACAG|ATTTGTTGTTGGGGATAGATAAGGAAAGAAGAAAAAGGCTCTGGTGAGAAACCCATTGTACCTTCTGGATATGATCACTACCCAATTTTATCAGTGTCATTGATCACTAACCCAGTGCCTCGTATGGTGCCAGGCACAGAGTTACTCCAAGAATGTACAATAATGGCTGGATTCTCTTTCTCCCTGTGCAACTCTTCATGCATGTGACTGAACTTATATTAAGTGTCTGAAGGAGGTTCGTTCTGAGGATCTGGGACATGATGGGTGCTGAAGCTTCTACTCAAGATTTGAAGGGCAGCTGTCCTCAGGAGACCCCTG...AGCTGAACAAAAGTACGTTGTGGAATAGCTCCTGTGAGGTTCACAACATAGTCCGGAAGATGAGAAACTACTTTTTTTAGTAACCTGGATTCCCATCTAAG LNQFRYLPLENLRIIRGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLT|dlllgidkerrkrlw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 19000 ERBB4::LINC00630 ENSG00000178568.16::ENSG00000223546.9 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3286 TRUE 1238 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:211947430:- chr2:212240442-213403565:- chr2:212812155:- LINC00630 ENSG00000223546.9 lncRNA + + chrX:102769158-102885406:+ chrX:102878013:+ chrX:102024086-102140334:+ chrX:102132941:+ chr2:211832544,chr2:211832548 chrX:102866554,chrX:102866550 NA NA chr2:212697269,chr2:212697273 chrX:102121482,chrX:102121478 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Receptor_L_domain(37%)| Recep_L_domain(51%)| 0 1 5 207 42 ENST00000436443.5 ENST00000440496.5 upstream upstream duplicates(1) TGAAAACTGTGAGGTTGTCATGGGCAACCTGGAGATAACCAGCATTGAGCACAACCGGGACCTCTCCTTCCTGCGG___TCTGTTCGAGAAGTCACAGGCTACG...TCTTAATCAGTTTCGTTACCTGCCTCTGGAGAATTTACGCATTATTCGTGGGACAAAACTTTATGAGGATCGATATGCCTTGGCAATATTTTTAAACTACAGAAAAGATGGAAACTTTGGACTTCAAGAACTTGGATTAAAGAACTTGACAG|TTAACCTCAGAGACCTGGTAATCCATATGACCCCACAGCTATGCCTCATGgCCcAA...TGTTGTTGGGGATAGATAAGGAAAGAAGAAAAAGGCTCTGGTGAGAAACCCATTGTACCTTCTGGATATGATCACTACCCAATTTTATCAGTGTCATTGAT LNQFRYLPLENLRIIRGTKLYEDRYALAIFLNYRKDGNFGLQELGLKNLT|vnlrdlvihmtpqlclma NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 19001 ERBB4::LINC00630 ENSG00000178568.16::ENSG00000223546.9 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3286 TRUE 1238 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- LINC00630 ENSG00000223546.9 lncRNA + + chrX:102769158-102885406:+ chrX:102884143:+ chrX:102024086-102140334:+ chrX:102139071:+ chr2:211832544,chr2:211832548 chrX:102866554,chrX:102866550 NA NA chr2:212697269,chr2:212697273 chrX:102121482,chrX:102121478 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Receptor_L_domain(10%)| Recep_L_domain(0%)| 0 2 1 453 244 ENST00000436443.5 ENST00000440496.5 upstream upstream none GGACCGTCCAGCCCAGCGATTCTCAGTCAG___TGTGTGCAGGAACGGAGAATAAACTGAGCTCTCTCTCTGACCTGGAACAGCAGTACCGAGCCTTGCGCAAG...ACCGGGACCTCTCCTTCCTGCGG|ATTTGTTGTTGGGGATAGATAAGGAAAGAAGAAAAAGGCTCTGGTGAGAAACCCATTGTACCTTCTGGATATGATCACTAC...TCACTAACCCAGTGCCTCGTATGGTGCCAGGCACAGAGTTACTCCAAGAATGTACAATAATGGCTGGATTCTCTTTCTCCCTGTGCAACTCTTCATGCATGTGACTGAACTTATATTAAGTGTCTGAAGGAGGTTCGTTCTGAGGATCTGGGAC RDLSFLR|iccwg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 19004 CACNA2D1::ABCB1 ENSG00000153956.17::ENSG00000085563.15 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNA2D1 ENSG00000153956.17 protein_coding - - chr7:81946444-82443956:- chr7:82443365:- chr7:81575760-82073272:- chr7:82072681:- ABCB1 ENSG00000085563.15 protein_coding - - chr7:87503017-87713323:- chr7:87601078:- chr7:87132333-87342639:- chr7:87230394:- chr7:82398489,chr7:82398501 chr7:87654953,chr7:87654963 NA NA chr7:82027805,chr7:82027817 chr7:87284269,chr7:87284279 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |ABC_transporter(100%),ABC_transporter_transmembrane_region(100%) |ABC_ATPase(100%),ABC_membrane(100%),ABC_tran(100%) 4 2 1 213 2 ENST00000443883.2 ENST00000265724.8 upstream downstream none CCGCCCTTGCCGTCCCCCGCGCGGCTCCGCGCCTCGGGCCCCGGGCGCAGCCAGCCCTCCAGACGCCCGCGGTCCCGGCGGCGTGTGCTGCTCTTCCTCCGCCCGCGGTTTCCAGCGCCGCTCCTTCCCCCGCTTGGGCAGGGAGGGGGCATTGATCTTCGATCGCGAAGATGGCTGCTGGCTGCCTGCTGGCCTTGACTCTGACACTTTTCCAATCTTTGCTCATCGGCCCCTCGTCGGAGGAGCCGTTCCCTTCGGCCGTCAC|AGAGGTGCAACGGAAGCCAGAACATTCCTCCTGGAAATTCAACCTGTTTCGCAGTTTCTCGAGGAATCAGCATTCAGTCAATCCGGGCCGGGAGCAGTCATCTGTGGTGAGGCTGATTGGCTGGGCAGGAACAGCGCCGGGGCGTGGGCTGAGCACAGCCGCTTCGCTCTCTTTGCC MAAGCLLALTLTLFQSLLIGPSSEEPFPSAVt|evqrkpehsswkfnlfrsfsrnqhsvnpgreqssvvrligwagtapgrglstaaslsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19007 SPECC1::KCNJ12 ENSG00000128487.19::ENSG00000184185.10 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPECC1 ENSG00000128487.19 protein_coding + + chr17:20008865-20319026:+ chr17:20260294:+ chr17:19912178-20222339:+ chr17:20163607:+ KCNJ12 ENSG00000184185.10 protein_coding + + chr17:21376357-21419870:+ chr17:21408519:+ chr17:21279669-21323182:+ chr17:21311831:+ chr17:20266528 chr17:21376905 NA NA chr17:20169841 chr17:21280217 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Calponin_homology_(CH)_domain(16%)|Inward_rectifier_potassium_channel_C-terminal_domain(100%),Inward_rectifier_potassium_channel_N-terminal(100%),Inward_rectifier_potassium_channel_transmembrane_domain(100%) CAMSAP_CH(0%),CH(19%)|IRK(100%),IRK_C(100%),IRK_N(100%) 0 2 1 97 59 ENST00000395527.9 ENST00000583088.6 downstream upstream none CGGGCATGGAAACCACAAAGCAAACTCAG___TGTGGAAAGAAAAGACCCTCTGGCgGCCTTGGCCCGGGAATACGGTGGTTCCAAGCGCAATGCTCTACTGAAATGGTGCCAGAAGAAGACACAAGGTTATGCG|GATGTTCTAGTGACTGGATCCTTTCCAGTTGGTGCCTGGGAAATGGCAGCCACTACTAATTCAGCCTTGAAGACAGTACCGT...ACAGCATCGTGTCATCGGAGGAGGACGGGCTGCACCTGGTCACCATGTCGGGCGCCAACGGCTTCGGCAACGGCAAGGTGCACACGCGGCGCAGGTGCCGCAACCGCTTCGTCAAGAAGAATGcCCAGTGCAACATTGAGTTCGCCAACATGGACGAGAAGTCACAGCG RAWKPQSKLSVERKDPLAALAREYGGSKRNALLKWCQKKTQGYA|dvlvtgsfpvgawemaattnsalktvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE sperm antigen with calponin homology and coiled-coil domains 1 2 JMML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19011 SLC7A6::PRMT7 ENSG00000103064.15::ENSG00000132600.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3287 TRUE 1239 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68297476:+ chr16:68298419-68335726:+ chr16:68331379:+ PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68337459:+ chr16:68344854-68394755:+ chr16:68371362:+ chr16:68301989,chr16:68301987 chr16:68332090,chr16:68332088 NA NA chr16:68335892,chr16:68335890 chr16:68365993,chr16:68365991 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion/read-through medium none Amino_acid_permease(100%)| AA_permease(100%),AA_permease_2(100%)|PrmA(0%) 17 3 19 336 697 ENST00000379152.7 ENST00000687654.1 downstream upstream duplicates(4),mismatches(2) TGTTTTCCAGCTTATCAACTACTTCAGCTTCAGCTACTGGTTCTTCGTGGGCCTGTCTGTTGTTGGACAGCTCTACCTCCGCTGGAAGGAGCCCAAGCGGCC...TGATAGTGCCCCTCTTCACTGACACCATTAATTCCCTCATTGGCATCGGGATTGCCCTTTCTGGAGTCCCTTTCTACTTCATGGGTGTTTACCTGCCAGAGTCCCGGAGGCCATTGTTTATTCGGAATGTCCTGG___CTGCTATCACCAGAGGCACCCAGCAGCTTTGCTTTTGTGTCCTGACTGAGCTTGATGTAGCCGAAGAAAAAAAGGATGAGAGGAAAACTGACTAGAGGTCAGAGGTGGCTTTCTGAGGCCTGGAAGGCAGGCCAACCAGCAAAATCCTGATAACAAGACTCTGTGGGCCCAACTCTCCTGAATTAAAGGAGCCTTTTGACCCAATCATATAGTGGGGCTCAGGGCCAGTGCTCACTCTTATTG|AGGGTGACATGCCATGCCGTGCCAACATCCTGGTCACAGAGTTGTTTGACACAGAGCTGATCGGGGAGGGGGCGCTGCCCTCCTATGAGCACGCACACAGGCATCTCGTGGAG___GAAAATTGTGAGGCCGTGCCCCACAGAGCCACCGTCTATGCACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19012 SLC7A6::PRMT7 ENSG00000103064.15::ENSG00000132600.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3287 TRUE 1239 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68296810:+ chr16:68298419-68335726:+ chr16:68330713:+ PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68337459:+ chr16:68344854-68394755:+ chr16:68371362:+ chr16:68301989,chr16:68301987 chr16:68332090,chr16:68332088 NA NA chr16:68335892,chr16:68335890 chr16:68365993,chr16:68365991 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Amino_acid_permease(100%)| AA_permease(100%),AA_permease_2(100%)|PrmA(0%) 1 2 10 367 697 ENST00000219343.11 ENST00000687654.1 downstream upstream duplicates(2),mismatches(1) GCTCTACCTCCGCTGGAAGGAGCCCAAGCGGCCCCGGCCTCTCAAG___CTGAGCGTGTTTTTCCCCATCGTGTTCTGCATATGCTCCGTGTTTCTGGTGATAGTGCCCCTCTTCACTGACACCATTAATTCCCTCATTGGCATCGGGATTGCCCTTTCTGGAGTCCCTTTCTACTTCATGGGTGTTTACCTGCCAGAGTCCCGGAGGCCATTGTTTATTCGGAATGTCCTGG|AGGGTGACATGCCATGCCGTGCCAACATCCTGGTCACAGAGTTGTTTGACACAGAGCTGATCGGGGAGGGGGCGCTGCCCTCCTATGAGCACGCACACAGGCATCTCGTGGAG___GAAAATTGTGAGGCCGTGCCCCACAGAGCCACCGTCTATGCACAGCTGGTGGAGTCCGGGAGGATGTGGTCGTGGAACAAGCTATTTCCCATCCACGTGCAGACCAGCCTCGGAG...TCCCGTTGACGTGGAGAGCTGCCCTGGCGCACCCTCTGTCTGTGACATTCAGCTGAACCAGGTGTCACCAGCCGACTTTACAGTCCTCAGtGATGTGCcGC LYLRWKEPKRPRPLKLSVFFPIVFCICSVFLVIVPLFTDTINSLIGIGIALSGVPFYFMGVYLPESRRPLFIRNVL|eGDMPCRANILVTELFDTELIGEGALPSYEHAHRHLVEENCEAVPHRATVYAQLVESGRMWSWNKLFPIHVQTSLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19013 SLC7A6::PRMT7 ENSG00000103064.15::ENSG00000132600.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3287 TRUE 1239 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68287871:+ chr16:68298419-68335726:+ chr16:68321774:+ PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68337459:+ chr16:68344854-68394755:+ chr16:68371362:+ chr16:68301989,chr16:68301987 chr16:68332090,chr16:68332088 NA NA chr16:68335892,chr16:68335890 chr16:68365993,chr16:68365991 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Amino_acid_permease(42%)| AA_permease(59%),AA_permease_2(59%)|PrmA(0%) 1 1 4 276 697 ENST00000618043.4 ENST00000687654.1 downstream upstream duplicates(1),mismatches(1) GTCAGGCCATCATCGCCATCACCTTTGCCAACTACATCATCCAGCCGTCCTTCCCCAGCTGTGATCCCCCATACCTGGCCTGCCGTCTCCTGGCTGCTGCT...CTGACATTTGTGAACTGTGCCTATGTCAAGTGGGGCACACGTGTGCAGGACACGTTCACTTACGCCAAGGTCGTAGCGCTCATTGCCATCATTGTCATGGGCCTTGTTAAACTGTGCCAGG|AGGGTGACATGCCATGCCGTGCCAACATCCTGGTCACAGAGTTGTTTGACACAGAGCTGATCGGGGAGGGGGCGCTGCCCTCCTATGAGCACGCACACAGGCATCTCGTGGAG___GAAAATTGTGAGGCCGTGCCCCACAGAGCCACCGTCTATGCACAGCTGGTGGAGTCCGGGAGGATGTGGTCGTGGAACAAGCTATTTCCCATCCACGTGCAGACCAGCCTCGGAGAGCAGGTCATCGTCCC LTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQ|eGDMPCRANILVTELFDTELIGEGALPSYEHAHRHLVEENCEAVPHRATVYAQLVESGRMWSWNKLFPIHVQTSLGEQVIV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19014 SLC7A6::PRMT7 ENSG00000103064.15::ENSG00000132600.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3287 TRUE 1239 SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68337459:+ chr16:68344854-68394755:+ chr16:68371362:+ chr16:68301989,chr16:68301987 chr16:68332090,chr16:68332088 NA NA chr16:68335892,chr16:68335890 chr16:68365993,chr16:68365991 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none none |PrmA(0%) 1 0 0 308 697 ENST00000618043.4 ENST00000687654.1 downstream upstream mismatches(1) CGAGCATCCTGGCGGCGCCGGGCCACTGGGAG___AGTTTATGTGGCCGAGGCAGACAAGTGGAATTAGGCCTTGCTGCAGGGGACTTCATTTCCTTCTCAGTACTGGACCCATTTATGAGGAGGTGGCTTATGAAAGTGTGATGTTCGCGTATTTCTTGACAG|AGGGTGACATGCCATGCCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19024 PCNX1::DIAPH2 ENSG00000100731.16::ENSG00000147202.19 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3290 TRUE 1240 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:71109831:+ chr14:71374122-71582099:+ chr14:71576548:+ DIAPH2 ENSG00000147202.19 protein_coding + + chrX:96684712-97604997:+ chrX:97383909:+ chrX:95939711-96859996:+ chrX:96638908:+ chr14:71110908,chr14:71110906 chrX:97360010,chrX:97360005 NA NA chr14:71577625,chr14:71577623 chrX:96615009,chrX:96615004 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Pecanex_protein_(C-terminus)(100%)|DRF_Autoregulatory_Domain(100%) Pecanex_C(100%)| 4 0 0 446 674 ENST00000304743.7 ENST00000324765.13 downstream upstream mismatches(1) GCACTAGCCACAGCTCTCACTCTGTGCAGTCGGGCCTGGTCAGACAGTCTCCTGCCCGGGCCTCAGTAGCCAGCCAGTCTTCCTACTGCTATAGCAGCCGGCA...CATCCATCCAATCCCGACTGTCGATGGTGAACCAAATGGAACCCTCAGGTCAGAGCGGCCTGGCCTGTGTGCAGCACGGCCTGCCTTCCTCCAGCAGCTCC...ATtCGGTTAAAAGCTGGGAGAAATAGCTGGAAAGACTGGAGTCCGCAGGAGGGCATGGAAGGCCAT___GTGATTCACCGATGGGTGCCTTGCAGCAGAGATCCAG|GAAGCAGTGAGAGAAAACAATAAGAGAAGAGAAATGGAAGAGAAGACCAGGAGGGCAAAACTTGCAAAAGAGAAAGCTG IRLKAGRNSWKDWSPQEGMEGHVIHRWVPCSRDP|gsserkq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19025 PCNX1::DIAPH2 ENSG00000100731.16::ENSG00000147202.19 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3290 TRUE 1240 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:71109592:+ chr14:71374122-71582099:+ chr14:71576309:+ DIAPH2 ENSG00000147202.19 protein_coding + + chrX:96684712-97604997:+ chrX:97383909:+ chrX:95939711-96859996:+ chrX:96638908:+ chr14:71110908,chr14:71110906 chrX:97360010,chrX:97360005 NA NA chr14:71577625,chr14:71577623 chrX:96615009,chrX:96615004 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Pecanex_protein_(C-terminus)(100%)|DRF_Autoregulatory_Domain(100%) Pecanex_C(100%)| 0 1 0 434 674 ENST00000304743.7 ENST00000324765.13 downstream upstream mismatches(1) CTGGAAAGACTGGAGTCCGCAGGAGGGCATGGAAGGCCAT|GAAGCAGTGAGAGAAAACAATAAGAGAAGAGAAATGGAAGAGAAGACCAGGAGGGCAAAACTTGCAAAAGAGAAAGCTGAACAAGAAAAGTTAGAACGCCAGAAGAAAAAGAAACAACTCATTGATATAAACAAAGG WKDWSPQEGMEGH|EAVRENNKRREMEEKTRRAKLAKEKAEQEKLERQKKKKQLIDINK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19027 SMYD4::NAA38 ENSG00000186532.12::ENSG00000183011.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD4 ENSG00000186532.12 protein_coding - - chr17:1779485-1830634:- chr17:1799857:- chr17:1682779-1733928:- chr17:1703151:- NAA38 ENSG00000183011.14 protein_coding - - chr17:7856685-7885238:- chr17:7857198:- chr17:7760003-7788556:- chr17:7760516:- chr17:1795604,chr17:1795631 chr17:7871818,chr17:7871846 NA NA chr17:1698898,chr17:1698925 chr17:7775136,chr17:7775164 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none MYND_finger(100%),SET_domain(92%)|LSM_domain_(100%) SET(5%),zf-MYND(100%)|LSM(100%) 1 1 6 258 4680 ENST00000305513.12 ENST00000576861.5 upstream downstream none ATGCGATATTAATGGGAAGTATGAAAATAATTATAATGCTGTCTTCAACCTTTTGCCCCACACTGAAAACCATAGCCCAGAGCACAAATTCCTCTGTGCTC...GTGAACTCCTCTCAGCTTAAAGCAGCAGTGACACCTGAATTGTGTCCTGACGTGACTATTTGGGGAGTGGCGATGCTGAGACACATGTTACAGCTTCAGTGTAACGCTCAGGCGATGACCACCATACAACACACAG|GATTCGGACGGAGAGCGCGAGGACTCGGCGGCTGAGCGCGCCCGACAGCAGCTAGAGGCGCTGCTCAACAAGACTATGCGCATTCGCATGACAGATGGACGGACACTGGTCGGCTGCTTCCTCTGCACTGACCGTGACTGCAATGTCATCCTGGGCTCGGCGCAGGAGTTCCTCAAGCCGTCGG___ATTCCTTCTCTGCCGGGGAGCCCCGTGTGCTGGGCCTGGCCATGGTACCCGGACACCACATCGTTTCCATTGAGGTGCAGAGGGAGAGTCTG VNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHT|gfgrrarglgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19029 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3291 TRUE 1241 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 2 3 8 900 ENST00000503441.1 ENST00000265070.7 upstream downstream mismatches(1) CTAGGTTGCATGTTCCTTATGAGAATCTAATGCCTGATGATCTGTCATTGTCTCCCATCACCCCCAGATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGG...CGCATGGACAGGCGCTTGCTGGCCCTCATTTACCTGGCTCATGCCTCGGACGTCCTGGAGAATGCTTTTGCTCCTCTTCTGGACGAGCAGTATGATTTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 19030 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3291 TRUE 1241 ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106401:- chr5:32103551-32122047:- chr5:32106507:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 0 3 11 900 ENST00000503441.1 ENST00000265070.7 upstream downstream none AGA___GTTGTTAGAAGGACTGAATGAGATGAAGTAGAGGAAAGTCTTCTAGGACAGGGGTCCTCAACCCTTGGGCCACAGACTGGTGGCAGGAGGGCTGCACAGCAG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGcGG...ATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 19038 FAM171A2::AATF ENSG00000161682.15::ENSG00000275700.6 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44359579:- chr17:42430583-42441221:- chr17:42436947:- AATF ENSG00000275700.6 protein_coding + - chr17:36948925-37056871:+ chr17:36999241:- chr17:35306225-35414171:+ chr17:35356540:- chr17:44356564,chr17:44356566 chr17:37005945,chr17:37005944 NA NA chr17:42433932,chr17:42433934 chr17:35363244,chr17:35363243 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none Uncharacterised_protein_family_UPF0560(13%)| UPF0560(8%)| 3 0 0 830 23 ENST00000293443.12 unknown upstream downstream mismatches(1) CCTGATCAAGGTGCAGGTGTATGTGAGCGGGGAGCTGGTGCCCCTGGCCCGGGCCTCAGTGGATGTGTTTGGGAACCGGACTCTGCTGGCAGCTGGCACCACAGACTCAGAGGGTGTGGCCACCCTGCCCCTCAGTTATCGCTTGGGCACCTGGGTGCTGGTCACTGCT...CAACTCTGTGCCCTGGCGTGTTGACAAGCTGCCCT___TGTATGCGTCTGTCAGCCTCTACCTGCTCCCTGAGCGGCCGGCCACGCTCATCCTCTATGAGGACCTGGTGCACATTCTCCTAGGCTCTCCCG|AAATTTTCAAACATCCACAAAAGTAGACAATAGCAAAA NSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSP|eifkhpqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19044 ALOX12-AS1::ANKFY1 ENSG00000215067.12::ENSG00000185722.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3295 TRUE 1242 ALOX12-AS1 ENSG00000215067.12 lncRNA - - chr17:6875232-7012530:- chr17:7002484:- chr17:6778551-6915849:- chr17:6905803:- ANKFY1 ENSG00000185722.18 protein_coding - - chr17:4163821-4263995:- chr17:4170861:- chr17:4067115-4167290:- chr17:4074155:- chr17:6888401,chr17:6888403 chr17:4172363,chr17:4172362 NA NA chr17:6791720,chr17:6791722 chr17:4075658,chr17:4075657 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none |FYVE_zinc_finger(100%) |FYVE(100%) 1 0 1 479 263 ENST00000574377.5 ENST00000341657.9 upstream downstream none CCGGGACTTGCTGTGTTGCCCAGGCTGGTCTTGAACTCCTGGTCTTAAGCAATCATACTGCTTTGGCCACCCAAAGCACTGGGATTACAGGCGTGAACCACCACACCCAGCTCTTAAAACCACAGTATTTCTAG|TGCTGCTCCTGGCATACATGAAAGGGAACGCCAACTTGTGCCGCGCCATCGTCCGGTCGGGGGCTCGCCTCGGGGTGAATAACAACCAGGGAGTCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19045 ALOX12-AS1::ANKFY1 ENSG00000215067.12::ENSG00000185722.18 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3295 TRUE 1242 ALOX12-AS1 ENSG00000215067.12 lncRNA - - chr17:6875232-7012530:- chr17:6926161:- chr17:6778551-6915849:- chr17:6829480:- ANKFY1 ENSG00000185722.18 protein_coding - - chr17:4163821-4263995:- chr17:4164173:- chr17:4067115-4167290:- chr17:4067467:- chr17:6888401,chr17:6888403 chr17:4172363,chr17:4172362 NA NA chr17:6791720,chr17:6791722 chr17:4075658,chr17:4075657 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site deletion low none none none 1 0 0 2 238 ENST00000653385.1 ENST00000648043.1 upstream downstream none GTCTAACTGGCGGAACTCCTGGGAACTGGGGCGATGGGCTCTTAGTATCGGAGGATTGGAGCCATCTGATTTTTACCTGAAATTCCTTAGTCTCTCCTGTG...AAGTGATTCTCGTCCCTCAGCCTCCCAAGTAGCTGGGATTACAG|ATGTGTGGAGTTGGCTGTTACGACATCCCTGTGTGATCCCAGAGGAGGGGCAGTtGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19072 CYB5D2::ALOX12P2 ENSG00000167740.10::ENSG00000291084.1 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYB5D2 ENSG00000167740.10 protein_coding + + chr17:4143168-4187310:+ chr17:4154860:+ chr17:4046462-4090605:+ chr17:4058154:+ ALOX12P2 ENSG00000291084.1 lncRNA + + chr17:6853861-6954107:+ chr17:6892003:+ chr17:6757180-6857426:+ chr17:6795322:+ chr17:4172362,chr17:4172363 chr17:6888403,chr17:6888401 NA NA chr17:4075657,chr17:4075658 chr17:6791722,chr17:6791720 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Cytochrome_b5-like_Heme/Steroid_binding_domain(100%)| Cyt-b5(100%)| 2 0 0 682 14 ENST00000301391.8 ENST00000574727.5 downstream upstream none CGCAGACAGCGAGCTTTTCGCCAGTGCCAGGAATACAGATAAAACGAGAGAGACTAAGGGAGGGAGCGCGAGCACTAGCGCGCGAGAGAGAGAGCGAGAGC...CGGCTTATGGGCTGGTGGGGTCCCCGCGCTGGCTTTCGCCTTTTCATACCGGAGGAGCTGTCTCGCTACCGCGGCtGCCCAGGGGACCaGGGCCTGTACTT...TGCAAGAGAAGCAGACATTCCCGCCGTGCAACGCGGAGTGGAGCTCAGCCAGGGGCAGCCGGCTCTGGTGCTCCCAGAAGAG|TCAGAACCTTCAGGAAGGGGAGAGTGGCTCATGGGCTGAGTGGATAAACCACAAAATG QEKQTFPPCNAEWSSARGSRLWCSQKs|qnlqegesgswaewinhk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19084 PPIA::OGDH ENSG00000196262.15::ENSG00000105953.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1779 TRUE 3299 TRUE 1243 PPIA ENSG00000196262.15 protein_coding + + chr7:44796680-44824564:+ chr7:44796793:+ chr7:44836279-44864163:+ chr7:44836392:+ OGDH ENSG00000105953.16 protein_coding + + chr7:44606572-44709066:+ chr7:44693825:+ chr7:44646171-44748665:+ chr7:44733424:+ chr7:44798356,chr7:44798342 chr7:44687891,chr7:44687874 NA NA chr7:44837955,chr7:44837941 chr7:44727490,chr7:44727473 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(10%)|2-oxoglutarate_dehydrogenase_C-terminal(100%),Dehydrogenase_E1_component(41%),Transketolase__pyrimidine_binding_domain(100%) Pro_isomerase(1%)|E1_dh(7%),OxoGdeHyase_C(100%),Transket_pyr(100%) 67 281 100 56846 1299 ENST00000479021.1 ENST00000222673.6 downstream upstream duplicates(104),inconsistently_clipped(17),low_entropy(2),mismatches(28),multimappers(2) CGCCACCGCCGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCCACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAG|ATCGGCTTCACCACCGACCCTCGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCATTTTCCACGTGAACTCAGATGACCCCGAGGCTGTCATGTACGTGTGCAAAGTGGCGGCCGAGTGGAGGAGCACCTTCCACAAGGACGTGGTTGTCGATTTG___GTGTGTTACCGGCGCAACGGCCACAACGAGATGGATGAGCCCATGTTCACGCAGCCGCTCATGTACAAGCAGATCCGCAAGCAG MVNPTVFFDIAVDGEPLGRVSFE|IGFTTDPRMARSSPYPTDVARVVNAPIFHVNSDDPEAVMYVCKVAAEWRSTFHKDVVVDLVCYRRNGHNEMDEPMFTQPLMYKQIRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19085 PPIA::OGDH ENSG00000196262.15::ENSG00000105953.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3299 TRUE 1243 PPIA ENSG00000196262.15 protein_coding + + chr7:44796680-44824564:+ chr7:44797621:+ chr7:44836279-44864163:+ chr7:44837220:+ OGDH ENSG00000105953.16 protein_coding + + chr7:44606572-44709066:+ chr7:44693825:+ chr7:44646171-44748665:+ chr7:44733424:+ chr7:44798356,chr7:44798342 chr7:44687891,chr7:44687874 NA NA chr7:44837955,chr7:44837941 chr7:44727490,chr7:44727473 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(10%)|2-oxoglutarate_dehydrogenase_C-terminal(100%),Dehydrogenase_E1_component(41%),Transketolase__pyrimidine_binding_domain(100%) Pro_isomerase(18%)|E1_dh(7%),OxoGdeHyase_C(100%),Transket_pyr(100%) 0 1 298 410 1299 ENST00000677107.1 ENST00000222673.6 downstream upstream duplicates(64),mismatches(57),multimappers(2) CGAGGAAAACCGTGTACTATTAGCCATGGTCAACCCCACCGTGTTCTTCGACATTGCCGTCGACGGCGAGCCCTTGGGCCGCGTCTCCTTTGAG___TGACGGC...CTCTGCCTAGCAAGCAAGTTGCGACTGGCCACAAGGCAGGCCTCTTCCGACCAAG|ATCGGCTTCACCACCGACCCTCGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCATTTTCCACGTGAACTCAGATGACCCCGAGGCTGTCATGTACGTGTGCAAAGTGGCGGCCGAGTGGAGGAGCACCTTCCACAAGGACGTGGTTGTCGATTTG___GTGTGTTACCGGCGCAACGGCCACAACGAGATGGATGAGCCCATGTTCACGCAGCCGCTCATGTACAAGCAGATCCGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19088 DDX19A::GLG1 ENSG00000168872.17::ENSG00000090863.12 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DDX19A ENSG00000168872.17 protein_coding + + chr16:70346861-70373383:+ chr16:70356247:+ chr16:70380764-70407286:+ chr16:70390150:+ GLG1 ENSG00000090863.12 protein_coding - + chr16:74447427-74607144:- chr16:74477435:+ chr16:74481325-74641042:- chr16:74511333:+ chr16:70357277,chr16:70357609,chr16:70357354,chr16:70357356,chr16:70357274 chr16:74470947,chr16:74470981,chr16:74470924,chr16:74470924,chr16:74470924 NA NA chr16:70391180,chr16:70391512,chr16:70391257,chr16:70391259,chr16:70391177 chr16:74504845,chr16:74504879,chr16:74504822,chr16:74504822,chr16:74504822 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none none DEAD(72%)| 21 24 113 757 1038 ENST00000569771.5 unknown downstream upstream duplicates(26),low_entropy(2),mismappers(20),mismatches(22) CAAGGAAGAGAAAGTCAAAGCAGATACCAATG___GTATTATCAAAACCAGTACCACTGCCGAGAAAACAGATGAAGAGGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAACGGGATCCAAACTCCCCTCTGTACTCGGTGAAGTCGTTTGAAGAGCTTCGGCT|ATCAATCAGGCACTTATCCTGGAGGGCAGGATCCAGCTTGACATCCATGGCACGCTGGTGTAGGATCCTTTGGACTTCAGCTCGGCACTCCCGTGAGAGCTGCATGAGAAAAAATGAGCTAAATACTTGAAAG___AATAAAAATTAAATGTTGCGGCCAGGTGCGGTGGCTCACGCATGTAATCCCAGCACTTTGGGAGGTCGAGGCGG KEEKVKADTNGIIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRl|sirhlswragssltsmarwcrilwtsarhsrescmrknelnt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19091 MLLT3::TMIGD1 ENSG00000171843.17::ENSG00000182271.13 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1782 TRUE 3301 TRUE 1244 MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20448123:- chr9:20341667-20622498:- chr9:20448121:- TMIGD1 ENSG00000182271.13 protein_coding - - chr17:30316333-30334059:- chr17:30329529:- chr17:28643351-28661077:- chr17:28656547:- chr9:20444925,chr9:20444930,chr9:20444927 chr17:30332050,chr17:30332052,chr17:30332530 NA NA chr9:20444923,chr9:20444928,chr9:20444925 chr17:28659068,chr17:28659070,chr17:28659548 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none YEATS_family(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) YEATS(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%) 22 37 66 114 154 ENST00000380338.9 ENST00000538566.6 upstream downstream duplicates(29),mismatches(6) TGCAAAGATCCACCTTACAAAGTAGAAGAATCTGGGTATGCTGGTTTCATTTTGCCAATTGAAGTTTATTTTAAAAACAAG___GAAGAACCTAGGAAAGTCCGCTTTGATTATGACTTATTCCTGCATCTTGAAGGCCATCCACCAGTGAATCACCTCCGCTGTGAAAAGCTAACTTTCAACAACCCCACAGAGGACTTTAGGAGAAAGTTGCTGAAGGCAGGAGGG|GTTCTGTTTTAACTGTGAATGGTAAAACTGAGAACTATATCCTGGATACTACACCTGGCTCCCAAGCATCTCTGATATGTGCTGTTCAAAACCACACCAGAGAGGAAGAACTGCTCTGGTACCGAGAGGAGGGGAGAGTGGATTTGAAATCTGGAAACAAAATCAATTCCAGCTCTGTCTGTGTCTCTTCCATCAGTGAAAATGACAACGGAATCAGCTTTACCTGCAGGCTGGGGAGGGATCAGTCCGTGTCCGTTTCGGTGGTGCTGAATGTTACTTGTGAGTGAGG CKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGG|vlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4474 chr9:20502265-20502342:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19092 MLLT3::TMIGD1 ENSG00000171843.17::ENSG00000182271.13 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3301 TRUE 1244 MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20448123:- chr9:20341667-20622498:- chr9:20448121:- TMIGD1 ENSG00000182271.13 protein_coding - - chr17:30316333-30334059:- chr17:30317233:- chr17:28643351-28661077:- chr17:28644251:- chr9:20444925,chr9:20444930,chr9:20444927 chr17:30332050,chr17:30332052,chr17:30332530 NA NA chr9:20444923,chr9:20444928,chr9:20444925 chr17:28659068,chr17:28659070,chr17:28659548 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none YEATS_family(100%)| YEATS(100%)| 0 1 0 114 50 ENST00000380338.9 ENST00000328886.5 upstream downstream none TTTCAACAACCCCACAGAGGACTTTAGGAGAAAGTTGCTGAAGGCAGGAGGG|CTCTGCATGAAGGATAAAGACCCTCACAGTGAAACAGCTCT___ATGAGAAAGCTGAGATGCC FNNPTEDFRRKLLKAGG|LCMKDKDPHSETAL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4474 chr9:20502265-20502342:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19093 MLLT3::TMIGD1 ENSG00000171843.17::ENSG00000182271.13 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3301 TRUE 1244 MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20448123:- chr9:20341667-20622498:- chr9:20448121:- TMIGD1 ENSG00000182271.13 protein_coding - - chr17:30316333-30334059:- chr17:30325094:- chr17:28643351-28661077:- chr17:28652112:- chr9:20444925,chr9:20444930,chr9:20444927 chr17:30332050,chr17:30332052,chr17:30332530 NA NA chr9:20444923,chr9:20444928,chr9:20444925 chr17:28659068,chr17:28659070,chr17:28659548 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none YEATS_family(100%)|Immunoglobulin_I-set_domain(100%) YEATS(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),ig(82%) 0 0 0 114 67 ENST00000380338.9 ENST00000538566.6 upstream downstream low_entropy(1) CCACCAGTGAATCACCTCCGCTGTGAAAAGCTAACTTTCAACAACCCCACAGAGGACTTTAGGAGAAAGTTGCTGAAGGCAGGAGGG|TTCCTCCTCTCCTA...GTACAAAAACAGTAGTCTCCTCGATTTAGAGAAAAGCCGTCACCAAATCCAACAGACAAGTGAGTCTTTTCAGCTGTCAATCACCAAAGTCGAGAAGCCTG PPVNHLRCEKLTFNNPTEDFRRKLLKAGG|flls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4474 chr9:20502265-20502342:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19094 GLG1::ENSG00000285710 ENSG00000090863.12::ENSG00000285710.1 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3302 TRUE 1245 GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74471173:- chr16:74481325-74641042:- chr16:74505071:- ENSG00000285710 ENSG00000285710.1 lncRNA - - chr16:70349085-70372166:- chr16:70349597:- chr16:70382988-70406069:- chr16:70383500:- chr16:74470924,chr16:74470924,chr16:74470924,chr16:74470947,chr16:74470981 chr16:70357354,chr16:70357356,chr16:70357274,chr16:70357277,chr16:70357609 NA NA chr16:74504822,chr16:74504822,chr16:74504822,chr16:74504845,chr16:74504879 chr16:70391257,chr16:70391259,chr16:70391177,chr16:70391180,chr16:70391512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Cysteine_rich_repeat(62%)| Cys_rich_FGFR(91%)| 46 24 39 708 377 ENST00000205061.9 ENST00000650629.1 upstream downstream duplicates(24),low_entropy(1),mismatches(7) GGAGTGTAGAGATATAGTTGGCAACCTCACTGAGTTAGAATCAGAG___GATATTCAAATAGAAGCCTTGCTGATGAGAGCCTGTGAGCCCATAATTCAGAACTTCTGCCAC___GATGTGGCAGATAACCAGATAGACTCTGGGGACCTGATGGAGTGTCTGATACAGAACAAACACCAGAAGGACATGAACGAGAAGTGTGCCATCGGAGTTACCCACTTCCAGCTG|TGCTGTATTTCCAAATGTCTGATGGCTACCGGGCAGAAGAGAACACAGCAGGCCTGACCGCTCTCCTTAGGAAAGCCTATTTGCAAGGCTGGCCCTTGGCTGTCACCTGCGAACTTGGACTTTGGGAAGGTTCCCATCATTCCTAGAACTGATAAGAGGGGGTCAGTCTGCCTCAACTCTTTTTAAAAACAGTTGCATGTAATTTATGCTAACCACCTGCATTCCTTCTGGAAGTCTGGAATTCTGGTACATGCTAGG ECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCHDVADNQIDSGDLMECLIQNKHQKDMNEKCAIGVTHFQL|cciskclmatgqkrtqqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19095 GLG1::ENSG00000285710 ENSG00000090863.12::ENSG00000285710.1 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3302 TRUE 1245 GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74472349:- chr16:74481325-74641042:- chr16:74506247:- ENSG00000285710 ENSG00000285710.1 lncRNA - - chr16:70349085-70372166:- chr16:70349597:- chr16:70382988-70406069:- chr16:70383500:- chr16:74470924,chr16:74470924,chr16:74470924,chr16:74470947,chr16:74470981 chr16:70357354,chr16:70357356,chr16:70357274,chr16:70357277,chr16:70357609 NA NA chr16:74504822,chr16:74504822,chr16:74504822,chr16:74504845,chr16:74504879 chr16:70391257,chr16:70391259,chr16:70391177,chr16:70391180,chr16:70391512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Cysteine_rich_repeat(58%)| Cys_rich_FGFR(90%)| 1 0 15 709 377 ENST00000205061.9 ENST00000650629.1 upstream downstream mismatches(2) GAGCTGGAGTGCCTTCAGGACCATCTGGATGACTTGGTGGTGGAGTGTAGAGATATAGTTGGCAACCTCACTGAGTTAGAATCAGAG___GATATTCAAATAGAAGCCTTGCTGATGAGAGCCTGTGAGCCCATAATTCAGAACTTCTGCCAC|TGCTGTATTTCCAAATGTCTGATGGCTACCGGGCAGAAGAGAACACAGCAGGCCTGACCGCTCTCCTTAGGAAAGCCTATTTGCAAGGCTGGCCCTTGGCTGTCACCTGCGAACTTGGACTTTGGGAAGGTTCCCATCATTCCTAGAACTGATAAGAGGGGGTCAGTCTGCCTCAACTCTTTTTAAAAACAGTTGCATGTAATTTATGCTAACCACCTGCATTCCTTCTGGAAGTCTGGAATTCTGGTACATGCTAGG ELECLQDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCH|cciskclmatgqkrtqqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19096 GLG1::ENSG00000285710 ENSG00000090863.12::ENSG00000285710.1 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3302 TRUE 1245 GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74474546:- chr16:74481325-74641042:- chr16:74508444:- ENSG00000285710 ENSG00000285710.1 lncRNA - - chr16:70349085-70372166:- chr16:70349597:- chr16:70382988-70406069:- chr16:70383500:- chr16:74470924,chr16:74470924,chr16:74470924,chr16:74470947,chr16:74470981 chr16:70357354,chr16:70357356,chr16:70357274,chr16:70357277,chr16:70357609 NA NA chr16:74504822,chr16:74504822,chr16:74504822,chr16:74504845,chr16:74504879 chr16:70391257,chr16:70391259,chr16:70391177,chr16:70391180,chr16:70391512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Cysteine_rich_repeat(55%)| Cys_rich_FGFR(88%)| 1 0 6 815 377 ENST00000205061.9 ENST00000650629.1 upstream downstream mismatches(2) GGAACAGGGAAGGAGG___CTCTCACGGGAGcGCCGAGCTGAAGTCCAAAGGATCCTACACCAGCGTGCCATGGATGTCAAGCTGGATCCTGtCCTCCAGcATA...GGAAAATGGTGCAGTGAGAAAACAGAGACTGGACAG___GAGCTGGAGTGCCTTCAGGACCATCTGGATGACTTGGTGGTGGAGTGTAGAGATATAGTTGGCAACCTCACTGAGTTAGAATCAGAG|TGCTGTATTTCCAAATGTCTGATGGCTACCGGGCAGAAGAGAACACAGCAGGCCTGACCGCTCTCCTTAGGAAAGCCTATTTGCAAGGCTGGCCCTTGGCTGTCACCTGCGAACTTGGACTTTGGGAAGGTTCCCATCATTCCTAGAACTG...GGGGTCAGTCTGCCTCAACTCTTTTTAAAAACAGTTGCATGTAATTTATGCTAACCACCTGCATTCCTTCTGaAAGTCTGGAATTCTGGTACATGCTAGGC GKWCSEKTETGQELECLQDHLDDLVVECRDIVGNLTELESE|cciskclmatgqkrtqqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19098 ENSG00000260537::GLG1 ENSG00000260537.2::ENSG00000090863.12 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000260537 ENSG00000260537.2 protein_coding + + chr16:70299194-70372582:+ chr16:70356247:+ chr16:70333097-70406485:+ chr16:70390150:+ GLG1 ENSG00000090863.12 protein_coding - + chr16:74447427-74607144:- chr16:74477435:+ chr16:74481325-74641042:- chr16:74511333:+ chr16:70357277,chr16:70357609,chr16:70357354,chr16:70357356,chr16:70357274 chr16:74470947,chr16:74470981,chr16:74470924,chr16:74470924,chr16:74470924 NA NA chr16:70391180,chr16:70391512,chr16:70391257,chr16:70391259,chr16:70391177 chr16:74504845,chr16:74504879,chr16:74504822,chr16:74504822,chr16:74504822 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none none DEAD(75%),Helicase_C(66%)| 11 24 55 757 1038 ENST00000443119.7 unknown downstream upstream duplicates(17),low_entropy(1),mismappers(18),mismatches(11) TCAAAACCAGTACCACTGCCGAGAAAACAGATGAAGAGGAGAAAG___AGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAACGGGATCCAAACTCCCCTCTGTACTCGGTGAAGTCGTTTGAAGAGCTTCGGCT|ATCAATCAGGCACTTATCCTGGAGGGCAGGATCCAGCTTGACATCCATGGCACGCTGGTGTAGGATCCTTTGGACTTCAGCTCGGCACTCCCGTGAGAGCTGCATGAGAAAAAATGAGCTAAATACTTGAAAG___AATAAAAATTAAATGTTGCGGCCAGGTGCGGTGGCTCACGCATGTAATCCCAGCACTTTGGGAGGTCGAGGCGGG ktsttaektdeeekEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRl|sirhlswragssltsmarwcrilwtsarhsrescmrknelnt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19100 UMAD1::DGKB ENSG00000219545.12::ENSG00000136267.14 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UMAD1 ENSG00000219545.12 protein_coding + + chr7:7640711-7968020:+ chr7:7801743:+ chr7:7680342-8007651:+ chr7:7841374:+ DGKB ENSG00000136267.14 protein_coding - + chr7:14145049-14974777:- chr7:14862519:+ chr7:14184674-15014402:- chr7:14902144:+ chr7:7858958,chr7:7858959 chr7:14816219,chr7:14816214 NA NA chr7:7898589,chr7:7898590 chr7:14855844,chr7:14855839 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 22 13 18 473 35 ENST00000636849.1 unknown downstream upstream duplicates(14),low_entropy(1),mismatches(10) GGGGGACTGCGGGGCCAGCCTCAGGTAgCag___CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCCTCAGTACCAGAGACAGAAGCAGATGGATTCGTCCTTTTAG___GAGATACAACAGATGAGCAAAGAATGACAGCAAGAGGCAAAACTTCGGACATAGAGGCCAACCAACCTTTGGAG|ATAAGAAAACTGACATGAAGAGTTTACATTATTTGCCAAAAGTCACACCGTTAATAAGCAATGAAGCCAGAATTCAAACTCTTGGAGTTCAATAAAGGAGCCTCAACTCTTAGCCAATTGTAATTACACTATACTCTGTTGCCTCCCTTATATACGGACTAAATGTTTTTTGCTTGTACTTAAAAGTACAGAATTCAAAGCGAAAAAAGCCAAAAGAAAAGAATCAAGAACGCTTATAACTTC MFHFFRKPPESKKPSVPETEADGFVLLGDTTDEQRMTARGKTSDIEANQPLE|irklt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19101 ENSG00000283549::DGKB ENSG00000283549.1::ENSG00000136267.14 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000283549 ENSG00000283549.1 lncRNA + + chr7:7640752-8004053:+ chr7:7801743:+ chr7:7680383-8043683:+ chr7:7841374:+ DGKB ENSG00000136267.14 protein_coding - + chr7:14145049-14974777:- chr7:14862519:+ chr7:14184674-15014402:- chr7:14902144:+ chr7:7858958,chr7:7858959 chr7:14816219,chr7:14816214 NA NA chr7:7898589,chr7:7898590 chr7:14855844,chr7:14855839 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 14 13 15 473 35 ENST00000469183.5 unknown downstream upstream duplicates(11),mismatches(5) GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGTTTCACTTCTTCAGAAAGCCTCCGGAATCTAAAAAGCCCTCAGTACCAGAGACAGAAGCAGATGGATTCGTCCTTTTAG___GAGATACAACAGATGAGCAAAGAATGACAGCAAGAGGCAAAACTTCGGACATAGAGGCCAACCAACCTTTGGAG|ATAAGAAAACTGACATGAAGAGTTTACATTATTTGCCAAAAGTCACACCGTTAATAAGCAATGAAGCCAGAATTCAAACTCTTGGAGTTCAATAAAGGAGCCTCAACTCTTAGCCAATTGTAATTACACTATACTCTGTTGCCTCCCTTATATACGGACTAAATGTTTTTTGCTTGTACTTAAAAGTACAGAATTCAAAGCGAAAAAAGCCAAAAGAAAAGAATCAAGAACGCTTATAACTTCTCTGTACAAATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19118 BLTP3A::ANKS1A ENSG00000065060.18::ENSG00000064999.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1785 TRUE 3306 TRUE 1246 BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34792294:+ chr6:34759860-34845291:+ chr6:34760071:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34981690:+ chr6:34857032-35059183:+ chr6:34949467:+ chr6:34797713,chr6:34797713 chr6:34971167,chr6:34971165 NA NA chr6:34765490,chr6:34765490 chr6:34938944,chr6:34938942 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none N-terminal_region_of_Chorein_or_VPS13(13%)|Ankyrin_repeats_(3_copies)(43%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(0%)|Ank(18%),Ank_2(0%),Ank_3(15%),Ank_4(3%),Ank_5(8%),PID(100%),SAM_1(100%),SAM_2(100%) 5 9 8 62 66 ENST00000192788.6 ENST00000360359.5 downstream upstream duplicates(8),low_entropy(1),mismappers(2),mismatches(2) GGCGGCGGCGGCGGCTGTGTCCGGTGCTCACGCCGCGGCGAGGTGAGGGGgCCGCCTCTTCTCCACAACTGAGGAGGCCACAGCTGCCGGCCCACCCGCCTTCCACGCGGGCCGCGGCTCCGGCATGGCCGGGATCATTAAGAAGCAGATCCTGAAACACCTGTCCCG|AACAATGACAACGAGACAGCCCTGCATTGTGCAGCGCAGTATGGCCACACAGAGGTGGTGAAGGTGCTCTTAGAGGAGCTGACGGACCCCACCATGCGCAACAACAAATTCGAGACCCCTTTGGACCTGGCAGCACTGTACGGGCGACTGGAGGTGGTGAAAATGCTCCTTAATGCACACCCCAACCTCCTGAGCTGCAACACTAAGAAGCACACCCCTCTGCACTTGGCAGCAAGGAATGGCCACAAAGCCGTGGTCCAGGTCCTCC MAGIIKKQILKHLSr|tmttrqpcivqrsmatqrw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19119 BLTP3A::ANKS1A ENSG00000065060.18::ENSG00000064999.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3306 TRUE 1246 BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34792294:+ chr6:34759860-34845291:+ chr6:34760071:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34972581:+ chr6:34857032-35059183:+ chr6:34940358:+ chr6:34797713,chr6:34797713 chr6:34971167,chr6:34971165 NA NA chr6:34765490,chr6:34765490 chr6:34938944,chr6:34938942 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none N-terminal_region_of_Chorein_or_VPS13(13%)|Ankyrin_repeats_(3_copies)(44%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(0%)|Ank(18%),Ank_2(14%),Ank_3(15%),Ank_4(74%),Ank_5(69%),PID(100%),SAM_1(100%),SAM_2(100%) 2 0 9 62 15 ENST00000192788.6 ENST00000649117.1 downstream upstream duplicates(2),mismappers(1) GGCGGCGGCGGCGGCTGTGTCCGGTGCTCACGCCGCGGCGAGGTGAGGGGgCCGCCTCTTCTCCACAACTGAGGAGGCCACAGCTGCCGGCCCACCCGCCTTCCACGCGGGCCGCGGCTCCGGCATGGCCGGGATCATTAAGAAGCAGATCCTGAAACACCTGTCCCG|AATGCTCTTGAGATCAAAGAACTCAAAAAGTACGGCCCCTTTGACCCTTATATCAATGCCAAG MAGIIKKQILKHLSr|mllrsknskstapltlismp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19120 BLTP3A::ANKS1A ENSG00000065060.18::ENSG00000064999.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3306 TRUE 1246 BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34792294:+ chr6:34759860-34845291:+ chr6:34760071:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34983113:+ chr6:34857032-35059183:+ chr6:34950890:+ chr6:34797713,chr6:34797713 chr6:34971167,chr6:34971165 NA NA chr6:34765490,chr6:34765490 chr6:34938944,chr6:34938942 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none N-terminal_region_of_Chorein_or_VPS13(13%)|Ankyrin_repeats_(3_copies)(2%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) Chorein_N(0%)|Ank(0%),Ank_2(0%),Ank_3(0%),Ank_4(0%),Ank_5(0%),PID(100%),SAM_1(100%),SAM_2(100%) 0 1 0 62 66 ENST00000192788.6 ENST00000360359.5 downstream upstream none AGCAGATCCTGAAACACCTGTCCCG|GAACTGACGTCAACATAAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGGAACTGCCTTCTCAAAAGAG...GACTGGAAAAAGAAGTACAAAAGAAGTAGATAAAcCCCCCCCACCCCAGCCcCCTCTCATCTCCAGTATGGACTCCATATCACAGAAGTCTCAGG___GTGACG QILKHLSr|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19122 FOCAD::ASIC2 ENSG00000188352.13::ENSG00000108684.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3307 TRUE 1247 FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20658826:+ chr9:20658308-20995954:+ chr9:20658825:+ ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33104629:- chr17:31340105-32501983:- chr17:31431647:- chr9:20659801 chr17:33106613 NA NA chr9:20659800 chr17:31433631 NA NA sense sense unknown 5'UTR/splice-site intron translocation high none |Amiloride-sensitive_sodium_channel(35%) |ASC(7%) 3 6 7 125 10 ENST00000380249.5 unknown downstream downstream duplicates(10),mismappers(6),mismatches(4) CTCCAAGCCAG___...GTTTTTTAAGCCCGTCGGAAAAGCGCAGTATTCGGGTGGGAGTGACCCGATTTTCTAGGTGCCGTCTGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCC...?C?C?CGGTGCATGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACTCGGTATCTCAGATGGAAATGCAGAAATCACCGTCTTCTCCATCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTTGCTCCTCCCTGCAACTAACTCCATTCTTAATTG|GAGCAGAATCATTATACTGAATGAAAGCTTTAGCGCAGTCCCACGTAGAAAACAGACAAAAGCAACATGGCTCTGATCCCACTGGAGATGGAAACCCCCGTTTGCTTTCTCCCTTGGTCCCTGTGACCAACCCTGAGGCACCACTGAGGATGCCCTGTTTGAAAACCACTGGATGGGAGGCAGATGTCATTGGGATTAAAAGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19123 FOCAD::ASIC2 ENSG00000188352.13::ENSG00000108684.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1786 TRUE 3307 TRUE 1247 FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20658826:+ chr9:20658308-20995954:+ chr9:20658825:+ ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33088990:- chr17:31340105-32501983:- chr17:31416008:- chr9:20659801 chr17:33106613 NA NA chr9:20659800 chr17:31433631 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Amiloride-sensitive_sodium_channel(35%) |ASC(6%) 4 3 4 125 17 ENST00000380249.5 ENST00000359872.6 downstream downstream duplicates(2),mismappers(1),mismatches(3) CCCAGGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCACGGTGCATGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACTCGGTATCTCAGATGGAAATGCAGAAATCACCGTCTTCTCCATCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTTGCTCCTCCCTGCAACTAACTCCATTCTTAATTG|AGGAAACGACATTTGAAGCAGGAGTGAAAGTTCAGATCCACAGTCAGTCTGAGCCACCTTTCATCCAAGAGCTGGGCTTTGGGGTGGCTCCAGGGTTCCAGACCTTTGTGGCCACACAGGAGCAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19126 ASCC1::DNAJB12 ENSG00000138303.19::ENSG00000148719.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1787 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72196811:- chr10:73855790-73976892:- chr10:73956569:- DNAJB12 ENSG00000148719.16 protein_coding - - chr10:72332830-72355149:- chr10:72345127:- chr10:74092588-74114907:- chr10:74104885:- chr10:72177924,chr10:72177928 chr10:72349705,chr10:72349706 NA NA chr10:73937682,chr10:73937686 chr10:74109463,chr10:74109464 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none AKAP7_2'5'_RNA_ligase-like_domain(12%),KH_domain(100%)|DnaJ_domain(100%),Domain_of_unknown_function_(DUF1977)(100%) AKAP7_NLS(0%),KH_1(100%)|DUF1977(100%),DnaJ(100%) 6 1 7 352 253 ENST00000672957.1 ENST00000338820.7 upstream downstream duplicates(1) TAATCACTGGCCAGCATCGAAATGGTGTAATTTCAGCCCGAACACGGATTGATGTTCTTTTGGACACTTTTCGAAGAAAGCAGCCCTTCACTCACTTCCTTGCCTTTTTCCTCAATGAAGTTGAGGTTCAGGAAGGATTCCTGAGATTCCAGGAGGAAGTACTGGCGAAGTGCTCCATG|CCCTGATTGAGTCCCTCAACCAGAAACCACAGACTGCCGGTGACCAACCCCCACCCACAGACACAACCCATGCCACCCACAGGAAAGCAGGTGGGACCGATGCCCCCTCGGCCAACGGTGAAGCTGGAGGAGAGAGCACCAAAGGCTACACTGCAGAACAGGTTGCAGCTGTGAAAAGG...___GGTCAAGCAATGgAAAGATTACTATGAGATCCTGGGGGTGAGCAGAGGGGCCTCGGATGAGGACCTGAAGAAGGCCTACCGCAGACTGGCCCTCAAATTCCACCCAGACAAGAACCACGCA ITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSM|p* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Pheochromocytoma and Paraganglioma ADRENAL_GLAND no_match 73912627 FALSE 74095689 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19129 GET4::CTNNA3 ENSG00000239857.7::ENSG00000183230.18 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GET4 ENSG00000239857.7 protein_coding + + chr7:876554-896436:+ chr7:876800:+ chr7:916191-936073:+ chr7:916437:+ CTNNA3 ENSG00000183230.18 protein_coding - + chr10:65912457-67763637:- chr10:67546159:+ chr10:67672215-69523395:- chr10:69305917:+ chr7:879938,chr7:879930 chr10:67481310,chr10:67481299 NA NA chr7:919575,chr7:919567 chr10:69241068,chr10:69241057 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 5 2 246 77 ENST00000265857.8 unknown downstream upstream duplicates(1) GCGGCCGCAACCGCGGCGGCGTCCAGCGTGTGGAGGGCAAGCTGCGCGCCAGCGTCGAGAAGGGCGACTACTACGAGGCGCACCAGATGTACCGGACCCTGTTCTTCAG|GCTCTCACTTTGTCACCTAGGCTGGAGTACAGGGGTAATCTTAGCTCACTGCAGTCTCAAACTCCTGGGATCAAGCAATCCTCCTGCCTCAGCCTTCCAAGGAGCTGAGACTACAG___TGTGAAGATTTATCACGTCAAAATCAAGGCTACTCCCATGAAACTTACAGAAGAATTTCCCATGGAGCTTCAGCAAACTTTCGTGTCTCAGTCTATCATAAATCTCAGCTTGCTATTGACAGGGAAAGGAGGC GRNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFr|lslchlgwstgvilahcslkllgssnppasafqgaettv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19131 TYW5::C2CD6 ENSG00000162971.11::ENSG00000155754.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3308 TRUE 1248 TYW5 ENSG00000162971.11 protein_coding - - chr2:199928913-199955736:- chr2:199938933:- chr2:200793636-200820459:- chr2:200803656:- C2CD6 ENSG00000155754.15 protein_coding - - chr2:201487421-201619178:- chr2:201487902:- chr2:202352144-202483901:- chr2:202352625:- chr2:199937340,chr2:199937344 chr2:201495948,chr2:201495949 NA NA chr2:200802063,chr2:200802067 chr2:202360671,chr2:202360672 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Cupin-like_domain(61%)| Cupin_4(0%),Cupin_8(74%)| 0 4 2 307 76 ENST00000354611.9 ENST00000439140.6 upstream downstream mismatches(3) CCTGAATAAGAAGTAAGATGATTAAAAAGTGATTACTTTGTATTCAG___GATGTTGCAGATATCAGAAAGCAGTTTCCTTTGTTGAAAGGAGATATTAAGTTTCCAGAATTCTTCAAAGAGGAACAGTTCTTTTCCAGTGTTTTTCGAATTAGTTCACCAGGATTACAACTATGGACTCATTATGAT|GATTGTTCAGATAAATTTGAGGATTTACATGACATGACCTCATTTACACACCTTAAAAAAGTAAAATCAAGATCAAGGCTTTTAGGAAAAAGCTCAGATGATATCCATAACCATGCCAGACACTCTGCAAGACCATATACTGCTCCGGAGGTTAACAAGCAACGAGAAAGCTACAGTGGAAAGTTTACAAGTCGTCGAATGGTTTCATCAGGCTTAGTTCATATAAATGATAAAACATCAGATTATGAAATGCATAAAATGCGGCCAAAAAAAATTAAAAGAGGATATTGAAAAATGTTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19132 TYW5::C2CD6 ENSG00000162971.11::ENSG00000155754.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3308 TRUE 1248 TYW5 ENSG00000162971.11 protein_coding - - chr2:199928913-199955736:- chr2:199938933:- chr2:200793636-200820459:- chr2:200803656:- C2CD6 ENSG00000155754.15 protein_coding - - chr2:201487421-201619178:- chr2:201494759:- chr2:202352144-202483901:- chr2:202359482:- chr2:199937340,chr2:199937344 chr2:201495948,chr2:201495949 NA NA chr2:200802063,chr2:200802067 chr2:202360671,chr2:202360672 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cupin-like_domain(61%)| Cupin_4(0%),Cupin_8(74%)| 1 1 3 307 52 ENST00000354611.9 ENST00000439140.6 upstream downstream none AAGGATGAGAAATACTACTTACGGTCACTTGGAGAAGACCCTAGAAAG___GATGTTGCAGATATCAGAAAGCAGTTTCCTTTGTTGAAAGGAGATATTAAGTTTCCAGAATTCTTCAAAGAGGAACAGTTCTTTTCCAGTGTTTTTCGAATTAGTTCACCAGGATTACAACTATGGACTCATTATGAT|TTTCAGAAATTCAACAAGAACGGTTTTGATCCTTTTCTAAGGAATATAAACAAAATGTCAGTCAGAAAAAGAAAAGATCAAGATATATACAAATATAGAAATATCTTAGGTGCAGAGGTCATAGAGCATGAAGACCAGGATCCTCCTTATCCAGCACAATCAAAAACTG kDEKYYLRSLGEDPRKDVADIRKQFPLLKGDIKFPEFFKEEQFFSSVFRISSPGLQLWTHYD|FQKFNKNGFDPFLRNINKMSVRKRKDQDIYKYRNILGAEVIEHEDQDPPYPAQSKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19145 PAICS::SRP72 ENSG00000128050.9::ENSG00000174780.17 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3309 TRUE 1249 PAICS ENSG00000128050.9 protein_coding + + chr4:56435741-56464578:+ chr4:56453761:+ chr4:57301907-57330744:+ chr4:57319927:+ SRP72 ENSG00000174780.17 protein_coding + + chr4:56467617-56503681:+ chr4:56495357:+ chr4:57333783-57369847:+ chr4:57361523:+ chr4:56457822 chr4:56490880 NA NA chr4:57323988 chr4:57357046 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none AIR_carboxylase(75%),SAICAR_synthetase(100%)|SRP72_RNA-binding_domain(72%) AIRC(24%),SAICAR_synt(100%)|SRP72(57%) 2 2 8 4833 1845 ENST00000512576.3 ENST00000642900.1 downstream upstream duplicates(7),mismatches(2) CAAGAAGGCCTGTGGAAATTTTGGCATTCCATGTGAACTTCGAGTAACATCTGCGCATAAAGGACCAGATGAAACTCTGAGGATTAAAGCTGAGTATGAAG___GGGATGGCATTCCTACTGTATTTGTGGCAGTGGCAGGCAGAAGTAATGGTTTGGGACCAGTGATGTCTGGGAACACTGCATATCCAGTTATCAGCTGTCCTCCCCTCACACCAGACTGGGGAGTTCAGGATGTGTGGTCTTCTCTTCGACTACCCAGTG|ACAGGGAGATTTGAAAAAGAAGAAAAAGAAAAAGAAGG___GAAAATTGCCTAAGAATTATGACCCAAAAGTTACCCCAGATCCAGAAAGATGGCTGCCAATGCGAGAACGTTCTTACTACCGGGGAAGAAAGAAGGGTAAAAAGAAGGATCAGATTGGAAAAGGGACC KKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPS|drei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19146 PAICS::SRP72 ENSG00000128050.9::ENSG00000174780.17 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3309 TRUE 1249 PAICS ENSG00000128050.9 protein_coding + + chr4:56435741-56464578:+ chr4:56453761:+ chr4:57301907-57330744:+ chr4:57319927:+ SRP72 ENSG00000174780.17 protein_coding + + chr4:56467617-56503681:+ chr4:56500536:+ chr4:57333783-57369847:+ chr4:57366702:+ chr4:56457822 chr4:56490880 NA NA chr4:57323988 chr4:57357046 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none AIR_carboxylase(75%),SAICAR_synthetase(100%)|SRP72_RNA-binding_domain(50%) AIRC(24%),SAICAR_synt(100%)|SRP72(0%) 1 1 5 4833 1835 ENST00000512576.3 ENST00000642900.1 downstream upstream duplicates(4),mismatches(2) AAACAG___TCTTATCGGGACCTCAAAGAAGTAACTCCTGAAGGGCTCCAAATGGTAAAGAAAAACTTTGAGTGGGTTGCAGAGAGAGTAGAG___TTGCTTTTGAA...CATAAAGGACCAGATGAAACTCTGAGGATTAAAGCTGAGTATGAAG___GGGATGGCATTCCTACTGTATTTGTGGCAGTGGCAGGCAGAAGTAATGGTTTGGGACCAGTGATGTCTGGGAACACTGCATATCCAGTTATCAGCTGTCCTCCCCTCACACCAGACTGGGGAGTTCAGGATGTGTGGTCTTCTCTTCGACTACCCAGTG|GAAAATTGCCTAAGAATTATGACCCAAAAGTTACCCCAGATCCAGAAAGATGGCTGCCAATGCGAGAACGTTCTTACTACCGGGGAAGAAAGAAGGGTAAAAAGAAGGATCAGATTGGAAAAGGGACCCAGGGAGCAACTGCAGGAGCTTCATCTGAACT___GGATGCCAGTAAAcCTGTGAGCAGCCCACCCcCCTCCCCAAGACCTGGCAGTGCTGCAACAGTATCTGCCTCTACA...CCAGAAACCTGCAGGGGCTCCAGCAACAAAAAAGAAACAGCAACAGAAAAAGAAGAAAGGTGGAAAAGGTGGCTGGTGATGAGAATATTCTTGTTGCAGG HKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPS|gKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKpVSSPPpSPRPGSAATVSAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19147 PAICS::SRP72 ENSG00000128050.9::ENSG00000174780.17 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3309 TRUE 1249 PAICS ENSG00000128050.9 protein_coding + + chr4:56435741-56464578:+ chr4:56452052:+ chr4:57301907-57330744:+ chr4:57318218:+ SRP72 ENSG00000174780.17 protein_coding + + chr4:56467617-56503681:+ chr4:56500536:+ chr4:57333783-57369847:+ chr4:57366702:+ chr4:56457822 chr4:56490880 NA NA chr4:57323988 chr4:57357046 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none AIR_carboxylase(37%),SAICAR_synthetase(100%)|SRP72_RNA-binding_domain(50%) AIRC(2%),SAICAR_synt(100%)|SRP72(0%) 0 1 1 7283 1835 ENST00000512576.3 ENST00000642900.1 downstream upstream mismatches(1) GTTGTAGTGTTGATGGGCTCTACTTCTGATCTTGGTCACTGTGAAAAAATCAAGAAGGCCTGTGGAAATTTTGGCATTCCATGTGAACTTCGAGTAACATCTGCGCATAAAGGACCAGATGAAACTCTGAGGATTAAAGCTGAGTATGAAG|GAAAATTGCCTAA...TGCgAATGCGAGAACGTTCTTACTACCGGGGAAGAAAGAAGGGTAAAAAGAAGGATCAGATTGGAAAAGGGACCCAGGGAGCAACTGCAGGAGCTTCATCTGAAC VVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYE|gKLP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19167 DNER::TRIP12 ENSG00000187957.8::ENSG00000153827.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229714148:- chr2:230222345-230579271:- chr2:230578864:- TRIP12 ENSG00000153827.15 protein_coding - - chr2:229763837-229923239:- chr2:229778990:- chr2:230628553-230787955:- chr2:230643706:- chr2:229704596,chr2:229704598 chr2:229780468,chr2:229780467 NA NA chr2:230569312,chr2:230569314 chr2:230645184,chr2:230645183 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |HECT-domain_(ubiquitin-transferase)(100%) |HECT(100%) 0 1 3 4 838 ENST00000341772.5 ENST00000675453.1 upstream downstream none GCCGGAATGGGGGTGTGTGCACCTCGCGCCCTGAGCCGGACCCGCAGCACCCGGCCCCCGCCGGCGAGCCTGGCTACAGCTGCACCTGCCCCGCCGGGATCTCCGGCGCCAACTGCCAG|GTTGGTACAGGTCTTGGGCCTACACTGGAGTTTTATGCGCTTGTATCTCAGGAACTACAGAGAGCTGACTTGGGTCTTTGGAGAGGTGAAGAAGTAACTCTTAGCAATCCAAAAG___GGAGCCAAGAAGGGACCAAGTATATTCAAAACCTCCAGGGCCTGTTTGCGCTTCCCTTTGGTAGGACAGCAAAGCCAG...AAGGTTAAGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTG___GTGGACCTTCCCCTTGGCTTACCCTTTTATAAATG RNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANCQ|VGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGTKYIQNLQGLFALPFGRTAKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 230411663 FALSE 230650571 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19198 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40168472 chr1:39874716 NA NA chr1:40634144 chr1:40340388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 72 50 78 8687 5778 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(28),low_entropy(2),mismatches(20) GAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTG___ATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VYEGLDIITNKVSAQEQRICRHHMISFVDPLVTNYTVVDFRNRATALIEDIFARDKIPIVVGGTNYYIES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19199 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39852876:- chr1:40303782-40349183:- chr1:40318548:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(70%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(15%),zf-C2H2_jaz(100%),zf-met(100%) 0 7 33 8687 6318 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(4),mismatches(4) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGGCTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAG___GAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTaCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCC MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|PQEMGTEKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSElLHRQHTEEGGGP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19200 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39850261:- chr1:40303782-40349183:- chr1:40315933:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(52%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(8%),zf-C2H2_jaz(100%),zf-met(100%) 6 5 27 8687 8199 ENST00000372771.5 ENST00000495175.6 downstream downstream duplicates(3),mismatches(3) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTaCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCCTTGGAGGTCCTCTGAAGTTCTCTAACCCTTGCATCCTTTGGCTTCATGCTGACCAGGCAG...___TTCTAGATGAGCGCTTGGATAAGAGG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|ELASF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19201 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844218:- chr1:40303782-40349183:- chr1:40309890:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 11 11 15 8687 11533 ENST00000372771.5 ENST00000316891.10 downstream downstream mismatches(3) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGAATGGGCAG___CGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGATGCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCCAGACCATAACAAAGAACCTAAAGAGAAGGGATCCCCAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|GHKPTATPIKMPYNEAENKRSYHLCDLCDRIIIGDREWAAHIKSKSHLNQLKKRRRLDSDAVNTIESQSVSPDHNKEPKEKGSP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19202 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(35%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 5 4 26 8687 8939 ENST00000372771.5 ENST00000537440.5 downstream downstream duplicates(3),mismatches(4) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|TTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAG___GTATTGAGGC MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19203 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39844640:- chr1:40303782-40349183:- chr1:40310312:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(100%) |zf-C2H2_jaz(100%),zf-met(100%) 3 9 19 8687 10010 ENST00000372771.5 ENST00000316891.10 downstream downstream duplicates(2),mismatches(4) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GACCTGGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAATCGTGCAAAGTTTCATCCAG___GGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|dlvplsplsma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19204 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39847660:- chr1:40303782-40349183:- chr1:40313332:- chr1:40173685,chr1:40172612,chr1:40168472 chr1:39853583,chr1:39853599,chr1:39874716 NA NA chr1:40639357,chr1:40638284,chr1:40634144 chr1:40319255,chr1:40319271,chr1:40340388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |IPP_transferase(21%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(1%),zf-C2H2_jaz(100%),zf-met(100%) 1 0 21 8687 9105 ENST00000372771.5 ENST00000372818.5 downstream downstream duplicates(2),mismatches(3) GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTGATCACTGAGGGAAAATGCACACTGGAGACTAGTAACCAGCTTCTAAAGAAAG___GACCTGGTCCCATTGaCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|pglstwylpinwlqgisrvpdh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19205 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39841913:- chr1:40303782-40349183:- chr1:40307585:- chr1:40173685,chr1:40172612 chr1:39853583,chr1:39853599 NA NA chr1:40639357,chr1:40638284 chr1:40319255,chr1:40319271 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Zinc-finger_double-stranded_RNA-binding(33%) |zf-C2H2_jaz(1%),zf-met(1%) 2 1 4 8687 14366 ENST00000372771.5 ENST00000316891.10 downstream downstream mismatches(2) GGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAG?CCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGATGCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCCAGACCATAACAAAGAACCTAAAGAGAAGGGATCCCCAGGGCAGAATGATCAAGAGCTGAAATGCAGCGTTTAAGAGACATGTCCAGTGGCCTTTGGAAAGGTGGTGGGGATCCAGTTCAG MADGKGDAAAVAGAGAEAPAVAGAGDGVETE?MVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|rt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19206 RLF::TRIT1 ENSG00000117000.9::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3312 TRUE 1250 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ TRIT1 ENSG00000043514.17 protein_coding - + chr1:39838110-39883511:- chr1:39869470:+ chr1:40303782-40349183:- chr1:40335142:+ chr1:40173685 chr1:39853567 NA NA chr1:40639357 chr1:40319239 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 6 0 1 8687 17 ENST00000372771.5 unknown downstream upstream none TGGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGG...GAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|CaGCCTGCCTTGGCCTCCCAAAGTGCCGAGATTGCAGCCTCTGCCCGGCCGCCACCCCGTCTGGGA EQEVSEVSSLNYCRSFCQ|qpalasqsaeiaasarppprl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19208 FAM136A::FLJ46284 ENSG00000035141.9::ENSG00000248858.7 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM136A ENSG00000035141.9 protein_coding - - chr2:70295976-70302067:- chr2:70300840:- chr2:70523108-70529199:- chr2:70527972:- FLJ46284 ENSG00000248858.7 lncRNA - + chr8:92699742-92879502:- chr8:92733322:+ chr8:93711970-93891730:- chr8:93745550:+ chr2:70299741,chr2:70299743 chr8:92732750,chr8:92732748 NA NA chr2:70526873,chr2:70526875 chr8:93744978,chr8:93744976 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Eukaryotic_protein_of_unknown_function_(DUF842)(57%)| DUF842(24%)| 20 8 24 847 41 ENST00000037869.8 unknown upstream upstream duplicates(12),mismatches(7),multimappers(2) GTCGCCATGGCTGAGCTGCAGCAGCTCCGGGTGCAGGAGGCGGTGGAGTCCATGGTGAAGAGTCTGGAAAGAGAGAACATCCGGAAGATGCAG___GGTCTCATGTTCCGGTGCAGCGCCAGCTGTTGTGAGGACAGCCAGGCCTCCATGAAGCAGGTGCACCAGTGCATCGAGCGCTGCCATGTGCCTCTGGCTCAAGCCCAGGCTTTGGTCACCAGTGAGCTGGAGAAGTTCCAG|ATTATGAACACTTGTAGAGATTTTCAGTTGTTCTTAAATTCCTGTGACTACTACTCCTTATTTCAACTGATTGGGAAAATTCTTGGTGATCAGAAAACTTGGAGTAAGAGAAAAGTGGAAATGGTTTCTTGAAAACTGAAAAGCAGCATTGCCCCCAT___GTTATTCTTCAATGGATTATTTCAAAAAAAGGAAGAAAAAATTAAGTGAATTCATAGCAACCTTTAAAAAT MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQ|imntcrdfqlflnscdyyslfqligkilgdqktwskrkvemvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19210 CLTCL1::HIRA ENSG00000070371.16::ENSG00000100084.14 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1790 TRUE 3313 TRUE 1251 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19275623:- chr22:19166986-19279242:- chr22:19263146:- HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19331556:- chr22:19318221-19434973:- chr22:19319079:- chr22:19263920,chr22:19263923 chr22:19339707,chr22:19339707 NA NA chr22:19251443,chr22:19251446 chr22:19327230,chr22:19327230 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Clathrin_propeller_repeat(25%)| Clathrin_propel(0%)| 10 17 23 249 665 ENST00000427926.6 ENST00000263208.5 upstream downstream duplicates(7),mismappers(1),mismatches(3) CGCCGCCGAGGTCCCGCACCAGCCATGGCGCAGATCCTCCCTGTTCGCTTTCAGGAGCACTTCCAG___CTCCAAAACCTTGGAATTAATCCAGCTAACATTGGATTCAGCACACTGACCATGGAATCTGACAAGTTCATATGTATCCGAGAGAAAGTTGGTGAGCAGGCACAGGTCACGATCATTGACATGAGTGACCCAATGGCTCCGATCCGACGGCCTATCTCTGCAGAGAGTGCCATCATGAATCCAGCCTCTAAGGTGATAGCTCTGAAAG|GGTCTGCGGAAGAGGGAGCTGCTGAAGGAGCTGCTACCAGTCATCGGGCAGAACCTCCGATTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTGAGGGACAAGTAGCCTGCCCCAGCCTGCCCTGGCTGCAGCAAGGGCAGGGCCACACTCTCGCCGCTGATGACATGCAGGACCGCCTCTCACCTGACCAGGCTGTAGGGGGAGGAGACACTGGCAGGAGATGTGCTGTCCTGCACCAGCGCCAGCCCAGCTCCCTGGGCAGATGTGCCCTGTGTCCTGGGTCTGACATTGCCTCAGGAGGGGGAAGCTCATCCCTCCCTCCAAGC MAQILPVRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAESAIMNPASKVIALK|gsaeegaaegaatshraeppipaplhrvsgtarhpegqvacpslpwlqqgqghtlaaddmqdrlspdqavgggdtgrrcavlhqrqpsslgrcalcpgsdiasgggssslpp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19211 CLTCL1::HIRA ENSG00000070371.16::ENSG00000100084.14 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3313 TRUE 1251 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19291600:- chr22:19166986-19279242:- chr22:19279123:- HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19331556:- chr22:19318221-19434973:- chr22:19319079:- chr22:19263920,chr22:19263923 chr22:19339707,chr22:19339707 NA NA chr22:19251443,chr22:19251446 chr22:19327230,chr22:19327230 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 1 5 370 665 ENST00000427926.6 ENST00000263208.5 upstream downstream none CGTCGCCACCGGTCAGCCCGCGCGAGGGGTCGGCGTTCATTCCTGCCGCTGCCGCCGCCGCCGCCGAGGTCCCGCACCAGCCATGGCGCAGATCCTCCCTGTTCGCTTTCAGGAGCACTTCCAG|GGTCTGCGGAAGAGGGAGCTGCTGAAGGAGCTGCTACCAGTCATCGGGCAGAACCTCCGATTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTG...AGCCTGCCCCAGCCTGCCCTGGCTGCAGCAAGGGCAGGGCCACACTCTCGCCGCTGATGACATGCAGGACCGCCTCTCACCTGACCAGGCTGTAGGGGGAGGAGACACTGGCAGGAGATGTGCTGTCCTGCACCAGCGCCA MAQILPVRFQEHFQ|GLRKRELLKELLPVIGQNLRFQRLFTECQEQLDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19215 NEDD4::LRRC66 ENSG00000069869.17::ENSG00000188993.4 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEDD4 ENSG00000069869.17 protein_coding - - chr15:55826922-55993660:- chr15:55951376:- chr15:56119120-56285858:- chr15:56243574:- LRRC66 ENSG00000188993.4 protein_coding - + chr4:51993652-52020363:- chr4:52017022:+ chr4:52859818-52886529:- chr4:52883188:+ chr15:55950030,chr15:55950032 chr4:52015572,chr4:52015570 NA NA chr15:56242228,chr15:56242230 chr4:52881738,chr4:52881736 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none C2_domain(63%)| C2(16%)| 13 4 8 80 33 ENST00000435532.8 unknown upstream upstream duplicates(1) TGGAGGACGAG___GAAAATTCACGAATTGTGAGAGTAAGAGTTATAGCCGGAATAGGCCTTGCCAAGAAGGATATATTGGGAGCTAG___TGATCCTTACGTGAGAGTGACGTTATATGACCCAATGAATGGAGTTCTTACAAGTGTGCAAACAAAAACCATTAAAAAG___AGTTTGAATCCAAAGTGGAATGAAGAAATATTATTCAGA|CTGTCCCTTGAACCTGAAAACAAATGTGGAATTCTTATGAACATGAAACAACTCCACGTAAGCATTGTTTCTCTGCCTAGTTAAAATTGTACTCACCCTTGGGAGTGTCACTGAGTTTATTTCTTTGAAGAATGAGCACCTTCAGCAATGGAAACCTGTTTCTGAAGCTGCTTCTGTGGCGTTTCACCCATGAGGAC EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR|lslepenkcgilmnmkqlhvsivslps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19224 USP40::ENSG00000229321 ENSG00000085982.16::ENSG00000229321.2 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP40 ENSG00000085982.16 protein_coding - - chr2:233475526-233566782:- chr2:233519614:- chr2:234384172-234475428:- chr2:234428260:- ENSG00000229321 ENSG00000229321.2 lncRNA + - chr2:206798325-206926876:+ chr2:206877531:- chr2:207663049-207791600:+ chr2:207742255:- chr2:233517052,chr2:233517067,chr2:233517071 chr2:206890695,chr2:206890709,chr2:206890710 NA NA chr2:234425698,chr2:234425713,chr2:234425717 chr2:207755419,chr2:207755433,chr2:207755434 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Ubiquitin_carboxyl-terminal_hydrolase(100%)| UCH(100%),UCH_1(100%)| 1 1 6 73 10 ENST00000251722.10 unknown upstream downstream duplicates(1) TAACAG___CTTGTTGACCAAGGAAGAGAAATGGGTCACTAGTATGAATGAGATTGACTGGCTCCACGTTAAAAATTTATGCCAGTTAGAATCTGAAGAGAAGCAAGTTAAAATATCAGCAACTGTTAACACA___ATGGTGTTTGATATTCGAATTAAAGCCATAAAGGAATTAAAATTAATGAAGGAACTAG|ACAGTCTCACTGGACTGCAAGCTCCGCCT...CTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATCCACCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGCGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCCGACCTCATGATCTGCCCGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCGGCTGAATCAAAAATGTTTTAAAGATTTTCAGGCCCTAAATTTGAAATAAAA NSLLTKEEKWVTSMNEIDWLHVKNLCQLESEEKQVKISATVNTMVFDIRIKAIKELKLMKEL|dsltglqap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19226 OTUD7A::OR3A2 ENSG00000169918.10::ENSG00000221882.5 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OTUD7A ENSG00000169918.10 protein_coding - - chr15:31475398-31870789:- chr15:31870507:- chr15:31767601-32162992:- chr15:32162710:- OR3A2 ENSG00000221882.5 protein_coding - - chr17:3276177-3386317:- chr17:3279153:- chr17:3179471-3289611:- chr17:3182447:- chr15:31740589,chr15:31740591 chr17:3286087,chr17:3286086 NA NA chr15:32032792,chr15:32032794 chr17:3189381,chr17:3189380 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |Olfactory_receptor(100%) |7tm_1(57%),7tm_4(50%) 1 2 1 14 11 ENST00000307050.6 ENST00000573901.3 upstream downstream duplicates(1) CGGGACCGCGAGCGGCAGCTGGGGAGGGGGCCGCGGAGCCCGAGCGGGAGCAAAACAGCTGATCTGGTTTTCCTTTAAAGCGAGAGAAAATGGAAGTCGGGTAGCGGCGACTGCGGCGCTGCGGGCTGGCGGAGCGGAGCGGCGCGGCGCGGCAG|GTATTCTGACCTTTTCAGCTAGCAGAGGATGAGGAGGACAAGGTGGTGGTGTCATTGGGCATGTCAACCAAGAGCAAG___AAAC...AGAAGCTGGGACCAATAGGACCGCTGTTGCTGAGTTCATTCTACTGGGCCTAGTGCAAACAGAAGAGATGCAGCCAGTTGTCTTTGTGCTCCTCCTCTTTGCCTATCTGGTCACAACTGGGGGCAACCTCAGCATCCTGGCAGCCGTCTTGGTGGAGCCCAAACTCCACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19239 TRIT1::NDUFS5 ENSG00000043514.17::ENSG00000168653.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3317 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- NDUFS5 ENSG00000168653.11 protein_coding + + chr1:39026318-39034636:+ chr1:39034392:+ chr1:39491990-39500308:+ chr1:39500064:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|NADH:ubiquinone_oxidoreductase__NDUFS5-15kDa(25%) AAA_33(0%),IPPT(0%),IPT(0%)|Ndufs5(1%) 2 1 4 6206 65535 ENST00000316891.10 ENST00000372967.3 upstream upstream duplicates(1),mismatches(1) GGCGTCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|ATGAGACGTGCAGGTACCATCAGGAAGCAGCGGGATAAGCTGATAAAGGAAGGAAAGTACACCCCTCCACCTCACCACATTGGCAAGGGGGAGCCTCGGCCCTGAACAGAGCAGCTGCTGATGTCTGGAGGCTGATTTTCCTGTTCTCTGTTCTCCACTGGAAAGGTTGTTTACGAC ASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|MRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19242 PPIE::RHBDL2 ENSG00000084072.17::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3318 TRUE 1252 PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39745498:+ chr1:40157854-40229586:+ chr1:40211170:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38896069:- chr1:39351479-39407502:- chr1:39361741:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(15%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Rhomboid_family(63%) Pro_isomerase(0%),RRM_1(100%),RRM_5(100%)|Rhomboid(32%) 1 3 3 10492 75 ENST00000356511.6 ENST00000372990.6 downstream downstream none AAGGCCCGCTCAAATCCTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCGGCTGGCCGCATCCAGATGCTCCTGCGTTCTGATGTCGTGCCCATGACAGCAG|GGTCCCTTGCCAGCTCCATCTTTGACCCACTCAGATATCTTGTGGGAGCTTCAGGAGGAGTCTATGCTCTGATGGGAGGCTATTTTATGAATGTTCTGGTG___AATTTTCAAGAAATGATTCCTGCCTTTGGAATTTTCAGACTGCTGATCATCATCCTGATAA___TTGTGTTGGACATGGGATTTGCTCTCTATAGAAGGTTCTTTGTTCCTGAAGATGGGTCTCCGGTGAGTTCAGTTTCTTTCTTTTATAAAATAGAAATTAGTTTACTGTCAAAAAG KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTA|gSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMGFALYRRFFVPEDGSPvssvsffykieisllsk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19243 PPIE::RHBDL2 ENSG00000084072.17::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3318 TRUE 1252 PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39753052:+ chr1:40157854-40229586:+ chr1:40218724:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38919337:- chr1:39351479-39407502:- chr1:39385009:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(76%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Rhomboid_family(100%) Pro_isomerase(41%),RRM_1(100%),RRM_5(100%)|Rhomboid(100%) 0 1 4 11448 133 ENST00000356511.6 ENST00000372990.6 downstream downstream mismatches(1) TTCCTGACATGTGACAAGACAGACTGGCTGGATGGCAAGCATGTGGTGTTTGGAGAGGTCACCGAAGGCCTAGATGTCTTGCGGCAAATTGAG|GAAAGGCCTTGGAAAGCAGTCGTTGCGCCAGAC...TTCCCTGGGATTCATGTCCTTCTGGGGAGGAGGGAGGACCCAGGACAATGGCTGCTGTTCATGATCTGGAGATGGAGAGCATGAATCTGAATATGGGGAG FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE|erpwkavvap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19249 RLF::RRAGC-DT ENSG00000117000.9::ENSG00000228436.4 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RRAGC-DT ENSG00000228436.4 lncRNA + + chr1:38859912-38965038:+ chr1:38964134:+ chr1:39325584-39430710:+ chr1:39429806:+ chr1:40168566 chr1:38903762 NA NA chr1:40634238 chr1:39369434 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 2 4 0 8687 17 ENST00000372771.5 ENST00000667635.1 downstream upstream none GCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTG...GGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AGAGAAGAAAGGCTTCCTGTCTCTCATCTCTGGGACTGGCAGTGGCTGCACCAGCGACAGCCAGCAGCAGTGGCTGGCAGATCCACACCAGCAGAGACGAAGCTGAGCAACAGCTCTGGAGTGATGGCAAGAAGACCCAAGGCACTGTGGTACCTGTTGTCAACACTCAGATTCTGTAACCTGTATCAGAGGAAGATGGAGTGACCTCTG QLETELREQEVSEVSSLNYCRSFCQ|reerlpvshlwdwqwlhqrqpaavagrstpaetklsnssgvmarrpkalwyllstlrfcnlyqrkme* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19271 RLF::RHBDL2 ENSG00000117000.9::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3327 TRUE 1253 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38919337:- chr1:39351479-39407502:- chr1:39385009:- chr1:40168157,chr1:40168402 chr1:38927405,chr1:38927272 NA NA chr1:40633829,chr1:40634074 chr1:39393077,chr1:39392944 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none |Rhomboid_family(100%) |Rhomboid(100%) 1 0 1 8687 133 ENST00000372771.5 ENST00000372990.6 downstream downstream none GGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCcGGACcGCGGgCGTG...GAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GAAAGGCCTTGGAAAGCAGTCGTTGCGCCAGACAGCCCAGGGAAGAGCGGCAGCCTGAGGACCTAGGGCCACCTGCTGTTCCCTGGGATTCATGTCCTTCTGGGGAGGAGGGAGGACCCAGGACAATGGCTGCTGT EQEVSEVSSLNYCRSFCQ|erpwkavvapdspgksgslrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19272 RLF::RHBDL2 ENSG00000117000.9::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3327 TRUE 1253 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38893224:- chr1:39351479-39407502:- chr1:39358896:- chr1:40168157,chr1:40168402,chr1:40168419,chr1:40168753 chr1:38927405,chr1:38927272,chr1:38904323,chr1:38927422 NA NA chr1:40633829,chr1:40634074,chr1:40634091,chr1:40634425 chr1:39393077,chr1:39392944,chr1:39369995,chr1:39393094 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Rhomboid_family(41%) |Rhomboid(22%) 1 0 0 8687 59 ENST00000372771.5 ENST00000372990.6 downstream downstream none TCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AATTTTCAAGAAATGATTCCTGCCTTTGGAATTTTC RGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|NFQEMIPAFGI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19273 RLF::RHBDL2 ENSG00000117000.9::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3327 TRUE 1253 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38896069:- chr1:39351479-39407502:- chr1:39361741:- chr1:40168157,chr1:40168402,chr1:40168419,chr1:40168753 chr1:38927405,chr1:38927272,chr1:38904323,chr1:38927422 NA NA chr1:40633829,chr1:40634074,chr1:40634091,chr1:40634425 chr1:39393077,chr1:39392944,chr1:39369995,chr1:39393094 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |Rhomboid_family(63%) |Rhomboid(32%) 0 1 0 8687 75 ENST00000372771.5 ENST00000372990.6 downstream downstream none GCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GGTCCCTTGCCAGCTCCATCTTTGACCCACTCAGATATCT...CATCATCCTGATAA___TTGTGTTGGACATGGGATTTGCTCTCTATAGAAGGTTCTTTGTTCCTGAAGATGGGTCTCCG___GTGTCTTTTGCAGCTCACATTGCAG LREQEVSEVSSLNYCRSFCQ|gplpapslthsdi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19280 TRIT1::ENSG00000273637 ENSG00000043514.17::ENSG00000273637.1 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3329 FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- ENSG00000273637 ENSG00000273637.1 lncRNA - - chr1:38839333-38874494:- chr1:38839704:- chr1:39305005-39340166:- chr1:39305376:- chr1:39863811,chr1:39838601 chr1:38871902,chr1:38849476 NA NA chr1:40329483,chr1:40304273 chr1:39337574,chr1:39315148 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none IPP_transferase(0%)| AAA_33(0%),IPPT(0%),IPT(0%)| 0 1 0 6206 4224 ENST00000316891.10 ENST00000622355.1 upstream downstream none GGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GTTTAATAGACTACAACTTCCACTGTTTCCGAAAAGCTATTCATGAGGTTTTTGAGGTGGGTGTGACTTCTCA GQRLGGEIVSADSMQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19281 ENSG00000273637::TRIT1 ENSG00000273637.1::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000273637 ENSG00000273637.1 lncRNA - - chr1:38839333-38874494:- chr1:38851615:- chr1:39305005-39340166:- chr1:39317287:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) |IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 5481 5778 ENST00000622355.1 ENST00000316891.10 upstream downstream none CTTATGAACTTTGCTGTGACATGATCGATGTTGTAATTGATGTGTCTTtTATATATGG|GTCTATGAAGGCCTAGACATCATaACCAACAAGGgTTCTGCCC...CTCCAGCCAGGGTGACGAGAGCGAaACACCATCTCACAAAATATATATGTATATTTTCTTAGCACATGAAAATTATGTGAAATTAAAATTTCAGTGTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19291 NDUFS5::RHBDL2 ENSG00000168653.11::ENSG00000158315.11 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3331 FALSE NA NDUFS5 ENSG00000168653.11 protein_coding + + chr1:39026318-39034636:+ chr1:39028940:+ chr1:39491990-39500308:+ chr1:39494612:+ RHBDL2 ENSG00000158315.11 protein_coding - - chr1:38885807-38941830:- chr1:38886683:- chr1:39351479-39407502:- chr1:39352355:- chr1:39031300,chr1:39031393 chr1:38904321,chr1:38904388 NA NA chr1:39496972,chr1:39497065 chr1:39369993,chr1:39370060 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none NADH:ubiquinone_oxidoreductase__NDUFS5-15kDa(75%)|Rhomboid_family(14%) Ndufs5(3%)|Rhomboid(0%) 0 1 0 65535 101 ENST00000372967.3 ENST00000372990.6 downstream downstream none CAGAGAAAGAGTGCAAGATAGAATATGATGATTTCGTAGAGcGTTTGCTTCGGCAGAAAACG|GTGTCTTTTGCAGCTCACATTGCAGGTGGATTTGCTGGAATGTCCATTGGCTACACGGTGTTTAGCTGCTTTGATAAAGCACTG EKECKIEYDDFVErLLRQKT|VSFAAHIAGGFAGMSIGYTVFSCFDKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19315 TRIT1::RRAGC ENSG00000043514.17::ENSG00000116954.8 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- RRAGC ENSG00000116954.8 protein_coding - - chr1:38838198-38859772:- chr1:38839704:- chr1:39303870-39325444:- chr1:39305376:- chr1:39838601 chr1:38849476 NA NA chr1:40304273 chr1:39315148 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none IPP_transferase(0%)| AAA_33(0%),IPPT(0%),IPT(0%)| 0 1 0 6206 4224 ENST00000316891.10 ENST00000373001.4 upstream downstream none GGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GTTTAATAGACTACAACTTCCACTGTTTCCGAAAAGCTATTCATGAGGTTTTTGAGGTGGGTGTGACTTCTCA GQRLGGEIVSADSMQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19316 RRAGC::TRIT1 ENSG00000116954.8::ENSG00000043514.17 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RRAGC ENSG00000116954.8 protein_coding - - chr1:38838198-38859772:- chr1:38851615:- chr1:39303870-39325444:- chr1:39317287:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Gtr1/RagA_G_protein_conserved_region(100%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) Arf(100%),Gtr1_RagA(100%),SRPRB(100%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 5481 5778 ENST00000373001.4 ENST00000316891.10 upstream downstream none CTTATGAACTTTGCTGTGACATGATCGATGTTGTAATTGATGTGTCTTtTATATATGG|GTCTATGAAGGCCTAGACATCATaACCAACAAGGgTTCTGCCC...CTCCAGCCAGGGTGACGAGAGCGAaACACCATCTCACAAAATATATATGTATATTTTCTTAGCACATGAAAATTATGTGAAATTAAAATTTCAGTGTCCG YELCCDMIDVVIDVSfIYg|smka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19317 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1793 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 181 235 300 6459 1251 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(123),low_entropy(2),mismappers(13),mismatches(49) ACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCACATCTCAAATCACAGTCTCTGTCTGTAGTAGATAAAAAAAAATGGACACACACTTTGCAATACCACCCATCAAGAGATTAAGTAACTTTCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19318 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1794 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406633:- chr8:129417515-129576925:- chr8:129418879:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 158 128 300 6459 2358 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(122),inconsistently_clipped(2),low_entropy(14),mismappers(4),mismatches(37) ACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCACATCTCAAATCACAGTCTCTGTCTGTAGTAGATAAAAAAAAATGGACACACACTTTGCAATACCACCCATCAAGAGATTAAGTAACTTTCTTCATCCCTTGAATCTAGTGGGCTCTTGTGACTACCAATAGAATTTGGTGGAAGTGACACTCTGCCTTCTGCAACAAGGCACCTGTGCTGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19319 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1795 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127809647,chr8:127851917 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128546223,chr8:128467717 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128821893,chr8:128864163 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129558469,chr8:129479963 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 96 94 300 9629 399 ENST00000651587.1 ENST00000520766.5 downstream downstream duplicates(55),low_entropy(7),mismatches(23) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCAGCCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAGGTGACTCAGCTCTGGCTTTTCAGCAATGCCCTAACATTGGCTATTTAAAAAGAG...___ACGGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19320 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127851917,chr8:127809647 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128467717,chr8:128546223 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128864163,chr8:128821893 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129479963,chr8:129558469 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 10 18 300 2073 399 ENST00000662410.1 ENST00000520766.5 downstream downstream duplicates(42),mismatches(21) GGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCAGCCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAGGTGACTCAGCTCTGGCTTTTCAGCAATGCCCTAACATTGGCTATTTAAAAAG...___ACGGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19321 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128423593:- chr8:129417515-129576925:- chr8:129435839:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127809647,chr8:127851917 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128546223,chr8:128467717 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128821893,chr8:128864163 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129558469,chr8:129479963 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 5 4 86 9629 387 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(15),mismappers(1),mismatches(12) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAACAAGATCTGCACTGAATTATATG___CCACAGGGAGCCAGGATAGGAGGACAACATGGTGGATCCAGCATGGAACTTACAACTGAGGCTAGTTTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19322 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:127809647,chr8:127851917,chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:128108296,chr8:127803722,chr8:127803893,chr8:128174468,chr8:127851911,chr8:128106912 chr8:128546223,chr8:128467717,chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128477739,chr8:128558938,chr8:128559179,chr8:128422158,chr8:128467723,chr8:128468541 NA NA chr8:128821893,chr8:128864163,chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:129120542,chr8:128815968,chr8:128816139,chr8:129186714,chr8:128864157,chr8:129119158 chr8:129558469,chr8:129479963,chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129489985,chr8:129571184,chr8:129571425,chr8:129434404,chr8:129479969,chr8:129480787 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 13 15 51 9629 1251 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(11),mismatches(10) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19323 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127851917,chr8:127809647 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128467717,chr8:128546223 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128864163,chr8:128821893 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129479963,chr8:129558469 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 7 300 725 399 ENST00000651587.1 ENST00000520766.5 downstream downstream duplicates(40),mismatches(21) CCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCAGCCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAGGTGACTCAGCTCTGGCTTTTCAGCAATGCCCTAACATTGGCTATTTAAAAAG...___ACGGCAGGAATGCAAAATGGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19324 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902539:+ chr8:128806772-129199347:+ chr8:128914785:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 3 299 105 1251 ENST00000657297.1 ENST00000520206.5 downstream downstream duplicates(33),mismappers(1),mismatches(33),multimappers(1) CGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGC...CTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___AATCAAGA...ATATGCAGGTTTGTTACAGAGGTATATGGGATGCGGTTGAAGTTTGGAGTATGATTGAACTCATCACGCAG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19325 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902539:+ chr8:128806772-129199347:+ chr8:128914785:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406633:- chr8:129417515-129576925:- chr8:129418879:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 0 299 105 2358 ENST00000657297.1 ENST00000520206.5 downstream downstream duplicates(28),mismatches(28),multimappers(1) GGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGC...CTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___AATCAAGAGATGCATATGCAGGTTTGTTACAGAGGTATATGGGATGCGGTTGAAGTTTGGAGTATGATTGAACTCATCACGCAG|ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCACATCTCAAATCACAGTCTCTGTCTGTAGTAGATAAAAAAAAATGGACACACACTTTGCAATACCACCCATCAAGAGATTAAGTAACTTTCTTCATCCCTTGAATCTAGTGGGCTCTTGTGACTACCAATAGAATTTGGTGGAAGTGACACTCTGCCTTCTGCAACAAGGCACCTGTGCTGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19326 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128423593:- chr8:129417515-129576925:- chr8:129435839:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127851917,chr8:127809647 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128467717,chr8:128546223 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128864163,chr8:128821893 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129479963,chr8:129558469 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 88 725 387 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(16),mismatches(12) GTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCG...GTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAACAAGATCTGCACTGAATTATATG___CCACAGGGAGCCAGGATAGGAGGACAACATGGTGGATCCAGCATGGAACTTACAACTGAGGCTAGTTTGAT...___GACATGGCACCAAATCTCATGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19327 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128423593:- chr8:129417515-129576925:- chr8:129435839:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127851917,chr8:127809647 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128467717,chr8:128546223 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128864163,chr8:128821893 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129479963,chr8:129558469 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 87 2073 387 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(15),mismatches(12) GTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCG...CTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAACAAGATCTGCACTGAATTATATG___CCACAGGGAGCCAGGATAGGAGGACAACATGGTGGATCCAGCATGGAACTTACAACTGAGGCTAGTTTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19328 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128414408:- chr8:129417515-129576925:- chr8:129426654:- chr8:127809647,chr8:127851917,chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:128108296,chr8:127803722,chr8:127803893,chr8:128174468,chr8:127851911,chr8:128106912 chr8:128546223,chr8:128467717,chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128477739,chr8:128558938,chr8:128559179,chr8:128422158,chr8:128467723,chr8:128468541 NA NA chr8:128821893,chr8:128864163,chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:129120542,chr8:128815968,chr8:128816139,chr8:129186714,chr8:128864157,chr8:129119158 chr8:129558469,chr8:129479963,chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129489985,chr8:129571184,chr8:129571425,chr8:129434404,chr8:129479969,chr8:129480787 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 54 9629 459 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(8),mismatches(7) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GACATGGCACCAAATCTCATGAGAGTGACAATAAGCTAGAACAGAAGTTTTGGAAAGCCAAAGAAAAGACTGTAACTGCACACAATAAgCAGAAAACATTTGTGCTTTCTGTCTCCATCTATCACCCAAACAGTCAAACCTGGAGAAAACTACTTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19329 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:127809647,chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:128174468,chr8:127851911,chr8:128106912,chr8:127851917 chr8:128546223,chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128422158,chr8:128467723,chr8:128468541,chr8:128467717 NA NA chr8:128821893,chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:129186714,chr8:128864157,chr8:129119158,chr8:128864163 chr8:129558469,chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129434404,chr8:129479969,chr8:129480787,chr8:129479963 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 2 52 2073 1251 ENST00000662410.1 ENST00000520206.5 downstream downstream duplicates(8),mismatches(8) GTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCG...GGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19330 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:127809647,chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:128174468,chr8:127851911,chr8:128106912,chr8:127851917 chr8:128546223,chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128422158,chr8:128467723,chr8:128468541,chr8:128467717 NA NA chr8:128821893,chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:129186714,chr8:128864157,chr8:129119158,chr8:128864163 chr8:129558469,chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129434404,chr8:129479969,chr8:129480787,chr8:129479963 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 53 725 1251 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(9),mismatches(8) GTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCG...GTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19331 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:128108296,chr8:127851917,chr8:128174468,chr8:127851911,chr8:128106912 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128477739,chr8:128467717,chr8:128422158,chr8:128467723,chr8:128468541 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:129120542,chr8:128864163,chr8:129186714,chr8:128864157,chr8:129119158 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129489985,chr8:129479963,chr8:129434404,chr8:129479969,chr8:129480787 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 53 617 1251 ENST00000654105.1 ENST00000520206.5 downstream downstream duplicates(9),mismatches(8) CCGCTCTGCATCATGTTG|TAACACAAGGAAGTGAAGCAATTTGCTCAAGATAATGTGTCTAGTCATCAaAAGGACTGGTCAGTGCCTCG___ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19332 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406633:- chr8:129417515-129576925:- chr8:129418879:- chr8:127809647,chr8:127851917,chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:128108296,chr8:127803722,chr8:127803893,chr8:128174468,chr8:127851911,chr8:128106912 chr8:128546223,chr8:128467717,chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128477739,chr8:128558938,chr8:128559179,chr8:128422158,chr8:128467723,chr8:128468541 NA NA chr8:128821893,chr8:128864163,chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:129120542,chr8:128815968,chr8:128816139,chr8:129186714,chr8:128864157,chr8:129119158 chr8:129558469,chr8:129479963,chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129489985,chr8:129571184,chr8:129571425,chr8:129434404,chr8:129479969,chr8:129480787 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 0 18 9629 2358 ENST00000651587.1 ENST00000520206.5 downstream downstream duplicates(3),mismatches(4) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATCTTGATGATGATGGATACTGCTTATTGGATACTCTCACATCTCAACAATCCAAACACCTTCCACAATGACCTGCTTAATCTGACCCCTGGCACATCTCAAATCACAGTCTCTGTCTGTAGTAGATAAAAAAAAATGGACACACACTTTGCAATACCACCCATCAAGAGATTAAGTAACTTTCTTCATCCCTTGAATCTAGTGGGCTCTTGTGACTACCAATAGAATTTGGTGGAAGTGACACTCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19333 PVT1::ENSG00000286034 ENSG00000249859.14::ENSG00000286034.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3338 TRUE 1255 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127901039:+ chr8:128806772-129199347:+ chr8:128913285:+ ENSG00000286034 ENSG00000286034.1 lncRNA + - chr8:128323131-128388636:+ chr8:128375493:- chr8:129335377-129400882:+ chr8:129387739:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/3'-3' high none none none 62 234 277 282 830 unknown unknown downstream downstream duplicates(53),inconsistently_clipped(2),low_entropy(1),mismappers(2),mismatches(16) CCTTCCCTGAGAGCCTGGGAACTTCTGGAAGGCAGGAGTGGGTGGTGTTCACCACTATATACCTCTGCCAGTCAGCATGCCCCACACCATGTACCAGCTCATGACACGCCTGAATGGGGTGAATTCTGGAAGGGGACAAGGCAAGTGCCAGGGCAGGTCCAGAGTCTGGGTGTGGAAGGAGCAACATAATGGGGGCCCCTTGCAGAAGCAGCAG|TGTAAGACTGCCAACTCCTTGAATTTTTACACTGTGTACAATAACTCCATAATTTCCTTCTGGTATTTAATGTGGGTTCTCCCAGAGGTTAGGAACTCCCTTTCTTTCCATATTGCAGCATGGGCATGTAGGATTAGATAAGCATACTTGCTATCTGTATGCACATTTATTCTTTTTCCCTTTCCCAGTTCTAAGGCTTGGATAAGTGCCAGTAGTTCTGCTAGCTGGGCACTGGTCCCTGGGGGAAGAGGCTTACTTTCAAGTACTGTTACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19334 PVT1::ENSG00000286034 ENSG00000249859.14::ENSG00000286034.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 1796 TRUE 3338 TRUE 1255 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ ENSG00000286034 ENSG00000286034.1 lncRNA + + chr8:128323131-128388636:+ chr8:128386011:+ chr8:129335377-129400882:+ chr8:129398257:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 4 9 10 2373 166 ENST00000667305.1 ENST00000652078.1 downstream upstream duplicates(3),low_entropy(1),mismatches(2) GGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGtGCGGGTGACCTTGGCAtATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|GAGACGGCTGGAAACATCCTCCTTGAGGGTAGCGGCCACCCTGTATACATCTCTTCAGAGCCCAGCGCTG___TTTATTTTAGTCTGAAAGATCTGGAAATATAGAAAACATCTCCATCTTTCTGCTGTTGAGTTCCCAGTGCCCCTGCAAAATG...___CCTGTGcCTGTCAATATCTGTGACTCTATCCCTCGACCCATAATTCCCAGCCTCCATCCTAGCTTCTGGGATAGAGTTCCATGGATAATTCAGCAATTGCAGGAAAATTTGGGCCCCCAACAGTGAACAACAGAACTCAAAAGATGCAAATACGAGGATAATG...AAGAGGATTAACCTACTAAATCCTACTAGCAAGTTTCTGGAGAACTCTATAAATTGTAGCAAATCAATAACCTCTGAAGTGTAACCTCTACTTGGACTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19335 PVT1::ENSG00000286034 ENSG00000249859.14::ENSG00000286034.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3338 TRUE 1255 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000286034 ENSG00000286034.1 lncRNA + + chr8:128323131-128388636:+ chr8:128386011:+ chr8:129335377-129400882:+ chr8:129398257:+ chr8:127892596,chr8:127892596,chr8:127892596,chr8:127892596,chr8:127892596,chr8:127892596,chr8:127898084,chr8:127898245,chr8:127894924,chr8:127894929,chr8:127894963,chr8:127894964,chr8:127894965,chr8:127894945,chr8:127894966,chr8:127894967,chr8:127894969,chr8:127894971,chr8:127894944,chr8:127894973,chr8:127894974,chr8:127894975,chr8:127894978,chr8:127894977,chr8:127894980,chr8:127894988,chr8:127894989,chr8:127894921,chr8:127894923,chr8:127894925,chr8:127894927,chr8:127894928,chr8:127894932,chr8:127894934,chr8:127894937,chr8:127894939,chr8:127894941,chr8:127894942,chr8:127894943,chr8:127894946,chr8:127894947,chr8:127894950,chr8:127894951,chr8:127894952,chr8:127894953,chr8:127894954,chr8:127894955,chr8:127894957,chr8:127894958,chr8:127894959,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040,chr8:127901040 chr8:128329838,chr8:128329835,chr8:128329834,chr8:128329833,chr8:128329832,chr8:128329822,chr8:128361182,chr8:128361494,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128379609,chr8:128375440,chr8:128375439,chr8:128375437,chr8:128375434,chr8:128375433,chr8:128375431,chr8:128375430,chr8:128375428,chr8:128375427,chr8:128375426,chr8:128375420,chr8:128375418,chr8:128375417,chr8:128375485,chr8:128375419,chr8:128375486,chr8:128375484,chr8:128375481,chr8:128375480,chr8:128375476,chr8:128375475,chr8:128375477,chr8:128375474,chr8:128375471,chr8:128375466,chr8:128375463,chr8:128375458,chr8:128375455,chr8:128375453,chr8:128375451,chr8:128375449,chr8:128375445,chr8:128375444 NA NA chr8:128904842,chr8:128904842,chr8:128904842,chr8:128904842,chr8:128904842,chr8:128904842,chr8:128910330,chr8:128910491,chr8:128907170,chr8:128907175,chr8:128907209,chr8:128907210,chr8:128907211,chr8:128907191,chr8:128907212,chr8:128907213,chr8:128907215,chr8:128907217,chr8:128907190,chr8:128907219,chr8:128907220,chr8:128907221,chr8:128907224,chr8:128907223,chr8:128907226,chr8:128907234,chr8:128907235,chr8:128907167,chr8:128907169,chr8:128907171,chr8:128907173,chr8:128907174,chr8:128907178,chr8:128907180,chr8:128907183,chr8:128907185,chr8:128907187,chr8:128907188,chr8:128907189,chr8:128907192,chr8:128907193,chr8:128907196,chr8:128907197,chr8:128907198,chr8:128907199,chr8:128907200,chr8:128907201,chr8:128907203,chr8:128907204,chr8:128907205,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286,chr8:128913286 chr8:129342084,chr8:129342081,chr8:129342080,chr8:129342079,chr8:129342078,chr8:129342068,chr8:129373428,chr8:129373740,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129391855,chr8:129387686,chr8:129387685,chr8:129387683,chr8:129387680,chr8:129387679,chr8:129387677,chr8:129387676,chr8:129387674,chr8:129387673,chr8:129387672,chr8:129387666,chr8:129387664,chr8:129387663,chr8:129387731,chr8:129387665,chr8:129387732,chr8:129387730,chr8:129387727,chr8:129387726,chr8:129387722,chr8:129387721,chr8:129387723,chr8:129387720,chr8:129387717,chr8:129387712,chr8:129387709,chr8:129387704,chr8:129387701,chr8:129387699,chr8:129387697,chr8:129387695,chr8:129387691,chr8:129387690 NA NA sense sense unknown exon/splice-site exon/splice-site deletion medium none none none 3 1 4 6459 166 ENST00000651587.1 ENST00000652078.1 downstream upstream mismatches(1) CTTCGTTCAAGTATTTTCTGAGCCTGcTGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAGACGGCTGGAAACATCCTCCTTGAGGGTAGCGGCCACCCTGTATACATCTCTTCAGAGCCCAGCGCTGG...___TTTATTTTAGTCTGAAAGATCTGGAAATATAGAAAACATCTCCATCTTTCTGCTGTTGAGTTCCCAGTGCCCCTGCAAAATGCCA...CTTCTGGGATAGAGTTCCATGGATAATTCAGCAATTGCAGGAAAATTTGGGCCCCCAACAGTGAACAACAGAACTCAAAAGATGCAAATACGAGGATAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19336 PVT1::ENSG00000286034 ENSG00000249859.14::ENSG00000286034.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3338 TRUE 1255 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ ENSG00000286034 ENSG00000286034.1 lncRNA + + chr8:128323131-128388636:+ chr8:128388462:+ chr8:129335377-129400882:+ chr8:129400708:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion medium none none none 0 1 1 2373 129 ENST00000667305.1 ENST00000652078.1 downstream upstream duplicates(3) GTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|GAAACCACATCAAGAAGACTTTGTTTTGGTGCCCCAAGAGGATTAACCTACTAAATCCTACTAGCAAGTTTCTGGAGAACTCTATAAATTGTAGCAAATCAATAACCTCTGAAGTGTAACCTCTACTTGGACTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19337 SRSF7::SOS1 ENSG00000115875.19::ENSG00000115904.15 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1797 TRUE 3339 TRUE 1256 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38749529:- chr2:38970741-38978636:- chr2:38976671:- SOS1 ENSG00000115904.15 protein_coding - - chr2:38962206-39124345:- chr2:38997425:- chr2:39189347-39351486:- chr2:39224566:- chr2:38748742,chr2:38748745,chr2:38748747 chr2:39001385,chr2:39001385,chr2:39001385 NA NA chr2:38975884,chr2:38975887,chr2:38975889 chr2:39228526,chr2:39228526,chr2:39228526 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|RasGEF_domain(17%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(17%)|RasGEF(0%) 111 80 137 2276 497 ENST00000446327.6 ENST00000692089.1 upstream downstream duplicates(71),inconsistently_clipped(1),low_entropy(3),mismatches(17) CGAAGATCCTAGAGATGCAGAAGATGCAGTACGAGGACTGGATGGAAA___GGTGATTTGTGGCTCCCGAGTGAGGGTTGAACTATCGACAGGCATGCCTCGGAGATCACGTTTTGATAGACCACCTGCCCGACGTCCCTTTGATCCAAATGATAGATGCTATGAGTGTGGCGAAAAGGGACATTATGCTTATGATTGTCATCGTTACAGCCGGCGAAGAAGAAGCAG|GAATTTATCTCACTAATATCTTGAAAACAGAAGAAGGCAACCCTGAGGTCCTAAAAAGACATGGAAAAGAGCTTATAAACTTTAGCAAAAGGAGGAAAGTAGCAGAAATAACAGGAGAGATCCAGCAGTACCAAAATCAGCCTTACTGTTTACGAGTAGAATCAGATATCAAA___AGGTTCTTTGAAAACTTGAATCCGATGGGAAATAGCATGGAGAAGGAATTTACA EDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSr|nlsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ras/Rac guanine nucleotide exchange factor 1 1 Yes lung adenocarcinoma, follicular thyroid adenoma epithelial, other oncogene, fusion missense, translocation 19338 SRSF7::SOS1 ENSG00000115875.19::ENSG00000115904.15 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3339 TRUE 1256 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38748898:- chr2:38970741-38978636:- chr2:38976040:- SOS1 ENSG00000115904.15 protein_coding - - chr2:38962206-39124345:- chr2:38997425:- chr2:39189347-39351486:- chr2:39224566:- chr2:38748742,chr2:38748745,chr2:38748747 chr2:39001385,chr2:39001385,chr2:39001385 NA NA chr2:38975884,chr2:38975887,chr2:38975889 chr2:39228526,chr2:39228526,chr2:39228526 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|RasGEF_domain(17%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(100%)|RasGEF(0%) 3 7 163 151 497 ENST00000425778.5 ENST00000692089.1 upstream downstream duplicates(39),mismatches(10) GTAAATTTGGCTTACAATTGGGGCCCCCCTCCGGTTTAGAAAGAGGAACACCAGATTGACCACATTCCCAACTAGAAAAATCTTCTTGCGTCAATCAAGCCTCACCTGGCTCATTTGGCTGTCAGTTTGATCGTCGTTAGATTGAAGAAAACATCTAGATGCAGCGATCGGCTATAGATACTTCTAGATCGTCTAGATCTACTAGACCATGGGCCAAAGAGGGTCGACCTGCAAACTTGCAAG|GAATTTATCTCACTAATATCTTGAAAACAGAAGAAGGCAACCCTGAGGTCCTAAAAAGACATGGAAAAGAGCTTATAAACTTTAGCAAAAGGAGGAAAGTAGCAGAAATAACAGGAGAGATCCAGCAGTACCAAAATCAGCCTTACTGTTTACGAGTAGAATCAGATATCAAA___AGGTTCTTTGAAAACTTGAATCCGATGGGAAATAGCATGGAGAAGGAATTTACAGATTATCTTTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ras/Rac guanine nucleotide exchange factor 1 1 Yes lung adenocarcinoma, follicular thyroid adenoma epithelial, other oncogene, fusion missense, translocation 19339 SRSF7::SOS1 ENSG00000115875.19::ENSG00000115904.15 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3339 TRUE 1256 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38748898:- chr2:38970741-38978636:- chr2:38976040:- SOS1 ENSG00000115904.15 protein_coding - - chr2:38962206-39124345:- chr2:38998610:- chr2:39189347-39351486:- chr2:39225751:- chr2:38748742,chr2:38748745,chr2:38748747 chr2:39001385,chr2:39001385,chr2:39001385 NA NA chr2:38975884,chr2:38975887,chr2:38975889 chr2:39228526,chr2:39228526,chr2:39228526 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|RasGEF_domain(17%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(100%)|RasGEF(8%) 1 0 163 151 22 ENST00000425778.5 ENST00000690876.1 upstream downstream duplicates(38),mismatches(10) GTAAATTTGGCTTACAATTGGGGCCCCCCTCCGGTTTAGAAAGAGGAACACCAGATTGACCACATTCCCAACTAGAAAAATCTTCTTGCGTCAATCAAGCCTCACCTGGCTCATTTGGCTGTCAGTTTGATCGTCGTTAGATTGAAGAAAACATCTAGATGCAGCGATCGGCTATAGATACTTCTAGATCGTCTAGATCTACTAGACCATGGGCCAAAGAGGGTCGACCTGCAAACTTGCAAG|ATGAGAAAAACTGAGGCACAGAGAGACTAATTAAGCAATTTGCACAAGATCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ras/Rac guanine nucleotide exchange factor 1 1 Yes lung adenocarcinoma, follicular thyroid adenoma epithelial, other oncogene, fusion missense, translocation 19340 SRSF7::SOS1 ENSG00000115875.19::ENSG00000115904.15 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3339 TRUE 1256 SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38749529:- chr2:38970741-38978636:- chr2:38976671:- SOS1 ENSG00000115904.15 protein_coding - - chr2:38962206-39124345:- chr2:38998610:- chr2:39189347-39351486:- chr2:39225751:- chr2:38748742,chr2:38748745,chr2:38748747 chr2:39001385,chr2:39001385,chr2:39001385 NA NA chr2:38975884,chr2:38975887,chr2:38975889 chr2:39228526,chr2:39228526,chr2:39228526 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|RasGEF_domain(17%) RRM_1(100%),RRM_5(100%),zf-CCHC(100%),zf-CCHC_3(17%)|RasGEF(8%) 0 0 0 2276 22 ENST00000446327.6 ENST00000690876.1 upstream downstream low_entropy(1) CTTTGATCCAAATGATAGATGCTATGAGTGTGGCGAAAAGGGACATTATGCTTATGATTGTCATCGTTACAGCCGGCGAAGAAGAAGCAG|ATGAGAAAAAC...ACAGGAGAGATCCAGCAGTACCAAAATCAGCCTTACTGTTTACGAGTAGAATCAGATATCAAA___AGGTTCTTTGAAAACTTGAATCCGATGGGAAATAGCA FDPNDRCYECGEKGHYAYDCHRYSRRRRSr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ras/Rac guanine nucleotide exchange factor 1 1 Yes lung adenocarcinoma, follicular thyroid adenoma epithelial, other oncogene, fusion missense, translocation 19343 SRGAP1::MSRB3 ENSG00000196935.10::ENSG00000174099.12 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3341 TRUE 1257 SRGAP1 ENSG00000196935.10 protein_coding + + chr12:63843761-64162217:+ chr12:63990072:+ chr12:64237541-64555997:+ chr12:64383852:+ MSRB3 ENSG00000174099.12 protein_coding + + chr12:65278643-65491430:+ chr12:65308529:+ chr12:65672423-65885210:+ chr12:65702309:+ chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044 chr12:65296356,chr12:65296351,chr12:65296408,chr12:65296369,chr12:65296364 NA NA chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824 chr12:65690136,chr12:65690131,chr12:65690188,chr12:65690149,chr12:65690144 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)|SelR_domain(100%) FCH(100%)|SelR(100%) 18 14 26 135 106 ENST00000355086.8 ENST00000308259.10 downstream upstream duplicates(7),mismatches(4) CGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTCATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAA___GAAAGACCAGAACCTGTTGTCTCCAGTGAACTGCTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACATCTATCTGAACAATGTGATTATGCGGTTCATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAG|CTCTTGCCCCTGTTCTTTGCTTCTCGTTTTGTTGGTGAAGATATCACAGTGATGTCTGCATTCAACCTGCTGCATTTGGTGACAAAGAGCCAGCCAGTAGCCCTTCGAGCCTGTGGGCTTCCCTCAG___...GCTTGTTGTACTGTACATAGTGAAGGCACA...___GGTCGTGTAGGGATAAAAAGAACTGTAAGG RKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKK|llplffasrfvgeditvMSAFNLLHLVTKSQPVALRACGLPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19344 SRGAP1::MSRB3 ENSG00000196935.10::ENSG00000174099.12 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3341 TRUE 1257 SRGAP1 ENSG00000196935.10 protein_coding + + chr12:63843761-64162217:+ chr12:63990072:+ chr12:64237541-64555997:+ chr12:64383852:+ MSRB3 ENSG00000174099.12 protein_coding + + chr12:65278643-65491430:+ chr12:65326826:+ chr12:65672423-65885210:+ chr12:65720606:+ chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044 chr12:65296356,chr12:65296351,chr12:65296408,chr12:65296369,chr12:65296364 NA NA chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824 chr12:65690136,chr12:65690131,chr12:65690188,chr12:65690149,chr12:65690144 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)|SelR_domain(100%) FCH(100%)|SelR(100%) 1 0 5 135 183 ENST00000355086.8 ENST00000541189.5 downstream upstream duplicates(4) ATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTCATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAA___GAAAGACCAGAACCTGTTGTCTCCAGTGAACTGCTGGTATTTGCTCCTGAACCAAGTAAGGAGAGAAAGCAAAGACCATGCAACCTTGAGTGACATCTA...CATGCAGATAAGTGAGGATTCTACCAGGATGTTTAAAAAG|GGTCGTGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCTAACACCCCTGCAGTACCATGTCACTCAGGAGAAAGGGACCGAAAG___TGCCTTTGAAGGAGAATAC MQISEDSTRMFKK|grvgikrtvrwsfpsrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19345 SRGAP1::MSRB3 ENSG00000196935.10::ENSG00000174099.12 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3341 TRUE 1257 SRGAP1 ENSG00000196935.10 protein_coding + + chr12:63843761-64162217:+ chr12:63984142:+ chr12:64237541-64555997:+ chr12:64377922:+ MSRB3 ENSG00000174099.12 protein_coding + + chr12:65278643-65491430:+ chr12:65308529:+ chr12:65672423-65885210:+ chr12:65702309:+ chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044 chr12:65296356,chr12:65296351,chr12:65296408,chr12:65296369,chr12:65296364 NA NA chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824 chr12:65690136,chr12:65690131,chr12:65690188,chr12:65690149,chr12:65690144 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Fes/CIP4__and_EFC/F-BAR_homology_domain(66%)|SelR_domain(100%) FCH(2%)|SelR(100%) 0 1 4 210 106 ENST00000355086.8 ENST00000645872.1 downstream upstream duplicates(1),mismatches(1) CCCGGAACAGCTGGATAATGTCCACCCCGAGCCGATTCAAGAAGGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAG___AAATTCGAGCTCAACTGGTAGAACAACAAAAATGCCTGGAGCAGCAAACGGAGATGCGAGTTCAGCTTCTCCAGGATCTGCAAGATTTCTTCCGAAAAAAAGCTGAAATTGAGACGGAATATTCCCGGAATCTAGAGAAGTTAGCAGAAAGGTTCATGGCAAAAACAAGAAGCACTAAGGATCATCAACAATACAA|CTCTTGCCCCTGTTCTTTGCTTCTCGTTTTGTTGGTGAAGATATCACAGTGATGTCTGCATTCAACCTGCTGCATTTGGTGACAAAGAGCCAGCCAGTAGCCCTTCGAGCCTGTGGGCTTCCCTCAGGTTGCTGCTTGTTGTACTGTACATAGTGAAGGCACAGGGCCAACTGGG...ATACACCATCATGCTTTGCTAAATTTCATTTTCTTTTACTTGGGCCCTAATTTGAAGACGGAAATTGGTTATAAATCACCACTCTACTTTGAGTAACATTC MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQYn|scpcslllvllvkisq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19346 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1800 TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142721026:- chr4:142944313-143768585:- chr4:143642179:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense unknown intron CDS/splice-site translocation high none |Glycosyl_hydrolases_family_15(0%) |Glyco_hydro_15(0%),KPBB_C(100%) 4 4 44 37 248 ENST00000262992.9 ENST00000299167.12 upstream upstream duplicates(9),mismatches(1) GGCTAAAAGTGTCTGCTGCTGCTGCCGCCCCCCACTCCGCCTCCGGGAGAG___AATACAAAGAAATGGTGTTACCTGGCAAGAGGTCTTCTGTCTTTTATGAAAAATTAGACAAAG___CACTAAGATTACTTTGGAAGGAGAATCACATCATTGAAGACAAAGTGATCTGGGCTACAAATAATTG|GTGGATCATCCATGCCATGGAGTATGAACTTCAGATCCGTGGCGGAGACAAGCCAGCCTTGGACTTGTATCAGCTGTCACCTAGTGAAGTTAAACAGCTTCTGCTGGATATTCTGCAGCCTCAACAGAATGGAAG___ATGTTGGCTGAACAGGCGTCAGATCGATGGGTCTTTGAATAGAACTCCCACCGGGTTCTATGACCGAGTGTGGCAGATTCTGGAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19347 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1801 TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142725839:- chr4:142944313-143768585:- chr4:143646992:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Glycosyl_hydrolases_family_15(0%) |Glyco_hydro_15(0%),KPBB_C(100%) 6 10 30 126 248 ENST00000262992.9 ENST00000299167.12 upstream upstream duplicates(9),mismatches(1) CGCGAAGCCGCGGCCGGCGCCCTGCGCCGTCGCCGCCGCCTGCTAGTTTCCTCCGGGTTCTCAGCCCCGGGTACTGAGGCTTCGGTCTATAAATAGCAGGT...CGCTCACACGCTCGCAAGCGAACGCAGGAAAGTCAGGCTAAAAGTGTCTGCTGCTGCTGCCGCCCCCCACTCCGCCTCCGGGAGAG___AATACAAAGAAATGGTGTTACCTGGCAAGAGGTCTTCTGTCTTTTATGAAAAATTAGACAAAG|GTGGATCATCCATGCCATGGAGTATGAACTTCAGATCCGTGGCGGAGACAAGCCAGCCTTGGACTTGTATCAGCTGTCACCTAGTGAAGTTAAACAGCTTCTGCTGGATATTCTGCAGCCTCAACAGAATGGAAG___ATGTTGGCTGAACAGGCGTCAGATCGATGGGTCTTTGAATAGAACTCCCACCGGGTTCTATGACCGAGTGTGGCAGATTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19348 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142846209:- chr4:142944313-143768585:- chr4:143767362:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Glycosyl_hydrolases_family_15(0%) |Glyco_hydro_15(0%),KPBB_C(100%) 1 4 16 170 248 ENST00000508084.1 ENST00000299167.12 upstream upstream duplicates(6) GCGAGCAGGGAGCGCGGCCGAAGCCAGAGGCTGGGGGAGCTGCTGGAGCCTCGCGAAGCCGCGGCCGGCGCCCTGCGCCGTCGCCGCCGCCTGCTAGTTTCCTCCGGGTTCTCAGCCCCGGGTACTGAGGCTTCGGTCTATAAATAGCAGGTTACAGCTCCTCCTGGGCGCGCACACGCTCACACGCTCGCAAGCGAACGCAGGAAAGTCAGGCTAAAAGTGTCTGCTGCTGCTGCCGCCCCCCACTCCGCCTCCGGGAGAG|GTGGATCATCCATGCCATGGAGTATGAACTTCAGATCCGTGGCGGAGACAAGCCAGCCTTGGACTTGTATCAGCTGTCACCTAGTGAAGTTAAACAGCTTCTGCTGGATATTCTGCAGCCTCAACAGAATGGAAG___ATGTTGGCTGAACAGGCGTCAGATCGATGGGTCTTTGAATAGAACTCCCACCGGGTTCTATGACCGAGTGTGGCAGATTCTGGAGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19349 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142660777:- chr4:142944313-143768585:- chr4:143581930:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Glycosyl_hydrolases_family_15(0%) |Glyco_hydro_15(0%),KPBB_C(100%) 0 0 0 29 248 ENST00000503927.5 ENST00000299167.12 upstream upstream mismatches(1) CGAGCAGGGAGCGCGGCCGAAGCCAGAGGCTGGGGGAGCTGCTGGAGCCTCGCGAAGCCGCGGCCGGCGCCCcGCGCCGgCGCCcCCcgCcGCcAGgTT...AGAGGCcGATCTAAGGGTTCCCGGCAGAAGGGGCCATCTTCAGAGGCTCTGGTTGCATGACTGTTTGGAGTTTGATGGCCTGAAG|GTGGATCATCCATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19350 CCDC88A::NRXN1 ENSG00000115355.18::ENSG00000179915.25 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55295597:- chr2:55514978-55647031:- chr2:55522733:- NRXN1 ENSG00000179915.25 protein_coding - + chr2:49918503-51225575:- chr2:50519766:+ chr2:50145641-51452713:- chr2:50746904:+ chr2:55292073,chr2:55292080 chr2:50514934,chr2:50514927 NA NA chr2:55519209,chr2:55519216 chr2:50742072,chr2:50742065 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none HOOK_domain(100%)| HOOK_N(100%)| 5 7 20 225 24 ENST00000263630.13 unknown upstream upstream duplicates(2),low_entropy(1),mismatches(2) CGAAAAACTGAAGATACCTACTTCATTAGTTCTGCGGGAAAACCTACACCAGGCACTCAAGGAAAAATAAAATTAGTAAAAGAATCTTCTCTGTCACGACAATCAAAAGATAGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCAACTGCCGAAGGAACTACACGAAGGACAAGCATCCATGATTTTTTGACCAAGGACAGTAGACTGCCTATATCAGTTGATTCACCACCAGCTGCTGCTGACAGCAACACCACTGCAGCATCTA|ATGCTCCCAACCAGTTATCATCTGAGAAAACTGAGATCACTGAAGAATCATGGTATAATTTCCATTGGTAGACATATTTTTCCTCCCTATTATATGTTACTTCAACTGGCTCAGTGACCTGGAATTGCTTTATATAACCTTGGCATAAAATCTAAGAGAAACAgTAGATTACATTTAAAAATATTGTATGTTTTAATCAAAGACAGGACATAATGTTTACAAGATGTTGCTAAAATTAGAGAACGGGGTGCAAAACATTCCTATACCATGGCTCTATATTTTTAAAGAAG RKTEDTYFISSAGKPTPGTQGKIKLVKESSLSRQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLTKDSRLPISVDSPPAAADSNTTAAS|napnqlssekteiteeswynfhw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19354 CAPRIN2::TMEM117 ENSG00000110888.19::ENSG00000139173.10 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1803 FALSE NA FALSE NA CAPRIN2 ENSG00000110888.19 protein_coding - - chr12:30709552-30823302:- chr12:30728648:- chr12:30862486-30976236:- chr12:30881582:- TMEM117 ENSG00000139173.10 protein_coding + + chr12:43835967-44389762:+ chr12:44376595:+ chr12:44229770-44783545:+ chr12:44770378:+ chr12:30726395,chr12:30726397 chr12:44362657,chr12:44362655 NA NA chr12:30879329,chr12:30879331 chr12:44756440,chr12:44756438 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Caprin-1_dimerization_domain(100%)|TMEM117_protein_family(38%) Caprin-1_dimer(100%)|TMEM117(2%) 4 7 11 261 26 ENST00000684863.1 ENST00000266534.8 upstream upstream duplicates(2),mismatches(1) CCAGTTCAGCTGCAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGTCTTGGACACCTTCCgTGCAGAGCGAACAGAACACCACCAAGTCATGGACCACTCCCATGTGTGAAGAACAGGATTCAAAACAGCCAGAGACTCCAAAATCCTGGGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACATCACAGTCACAGATTTCTCCAAAGTCCTGGGGAGTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGCTGCCCAGGAAGTTGAACACAGAACCCAAAGAT|GACTGGGAATTCCCACATTTCATGGGAGATGTTGATGTAAATCTCCCTGGTTTGCACACCCCTCACATGCAGTTCAAGATTCCTTTCTTCCAGAAAATCTTCAAGGAGGAATATCGTATTCACATAACAGG...___GCAAATGGTTTAACTATGGA...ATTTTGGATCTTAATATGTGGAAGAACCAAATATTTTATAAACCTCATGAATATGGGCAATATATCGGCCCGGGGCAGAAGATATATACAGTGAAAGACTCAGAAAGTTTAAAAGATTTGAACAGAACCAAGCTATCCTGGGAATGGAG PVQLQKEQDPKKQTPKSWTPSvQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQLLPRKLNTEPKD|DWEFPHFMGDVDVNLPGLHTPHMQFKIPFFQKIFKEEYRIHIT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19355 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE TRUE 1804 TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127668823:- chr8:128675525-128683235:- chr8:128681068:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 3 0 16 617 97 ENST00000523328.6 ENST00000652367.1 downstream downstream duplicates(1) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___...GTTACATCTTGGAG...___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GCTGCCCTGTCCTTCCCTGGGAATCAGGTCAAGAGCCCTGCTGGCAGGTGTCCTAGAGCATGAATCAGGtCCCTGGCAAGGAGAAGGCGGGAGATCTTGGCTGAGATCAG___TGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19356 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 0 2 10 617 146 ENST00000656491.1 ENST00000652367.1 downstream downstream duplicates(1) CGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGAAATGCCTGGCCCAGCCAGTGCTGTTCTAAAGATCCTCATCCTCATGGAGATAACCATTTTTAAGGAAGAAAAGAGGATCTGGACCCTACCCATCTCAGTCTCCATCAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19357 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818998:+ chr8:128806772-129199347:+ chr8:128831244:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 10 164 146 ENST00000656168.1 ENST00000652367.1 downstream downstream duplicates(1) GTGGCGgGATCATAGCTCACAACAGCCTCTGTCTGCCgGGCTCAAGGGATACTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTTGCAG|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19358 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 9 725 146 ENST00000660438.1 ENST00000652367.1 downstream downstream duplicates(1) GTCATTCTTCTTGGCTGGGCTGTTGATTTtATTAG___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19359 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127668823:- chr8:128675525-128683235:- chr8:128681068:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 1 9 9629 97 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(1) GCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCTGCCCTGTCCTTCCCTGGGAATCAGGTCAAGAGCCCTGCTGGCAGGTGTCCTAGAGCATGAATCAGGtCCCTGGCAAGGAGAAGGCGGGAGATCTTGGCTGAGATCAG___ATGTGGAACCAATTCAGGATTGTCC...___TGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19360 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 12 6459 146 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(1) GGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAG...CTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19361 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127668823:- chr8:128675525-128683235:- chr8:128681068:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 2 11 2073 97 ENST00000657667.1 ENST00000652367.1 downstream downstream duplicates(1) CCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GCTGCCCTGTCCTTCCCTGGGAATCAGGTCAAGAGCCCTGCTGGCAGGTGTCCTAGAGCATGAATCAGGtCCCTGGCAAGGAGAAGGCGGGAGATCTTGGCTGAGATCAG___TGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19362 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 0 7 2073 146 ENST00000657183.1 ENST00000652367.1 downstream downstream duplicates(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19363 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667579:- chr8:128675525-128683235:- chr8:128679824:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 6 9629 146 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATGTGGAACCAATTCAGGATTGTCCTTGTGATTCTTTTTCCTAAGTGGAATACTGAGCCTCCAGCTTGTGTGTCATATGTGTGGACTTTTCAGCATATTCTTCTCTGGCCCAGAAGTCTGGATTCTTCTTGTCTGTTGCAATAATATAAAG___TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19364 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667324:- chr8:128675525-128683235:- chr8:128679569:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 0 4 617 173 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(2) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAG...AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGAAATGCCTGGCCCAGCCAGTGCTGTTCTAAAGATCCTCATCCTCATGGAGATAACCATTTTTAAGGAAGAAAAGAGGATCTGGACCCTACCCATCTCAGTCTCCATCAGATCTTATGGATGCTCCAGGAATTGGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19365 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667324:- chr8:128675525-128683235:- chr8:128679569:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 4 725 173 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(1) AAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGAAATGCCTGGCCCAGCCAGTGCTGTTCTAAAGATCCTCATCCTCATGGAGATAACCATTTTTAAGGAAGAAAAGAGGATCTGGACCCTACCCATCTCAGTCTCCATCAGATCTTATGGATGCTCCAGGAATTGGCCATGATTCTCCTCTTTTCTACCATCTTGTATGTTGGGCTTTGTAGAGGATAGATGTTTTCTAGAAGAATGGCAGATAAGGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19366 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3344 TRUE 1259 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127667324:- chr8:128675525-128683235:- chr8:128679569:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 2 9629 173 ENST00000651587.1 ENST00000652367.1 downstream downstream duplicates(2) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGAgGTTGGCGGcCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TTATTCAGAGCTGTACATGAAGAGAAGTCCCACAGGGACCCTGGGATCAGAAGAACTCTGGGAAATGCCTGGCCCAGCCAGTGCTGTTCTAAAGATCCTCATCCTCATGGAtATAtCCATTTTTAAGGAAGAAAAGAGGATCTGGACCCTACCCATCTCAGTCTCCcTCAGATCTTATGGATGCTCCAGGAATTGGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19367 NHS::ENSG00000233928 ENSG00000188158.17::ENSG00000233928.7 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3345 TRUE 1260 NHS ENSG00000188158.17 protein_coding + + chrX:17375200-17735994:+ chrX:17692468:+ chrX:17393323-17754114:+ chrX:17710588:+ ENSG00000233928 ENSG00000233928.7 lncRNA + + chrX:33726337-34346527:+ chrX:34266095:+ chrX:33744454-34364644:+ chrX:34284212:+ chrX:17694946,chrX:17694945 chrX:34218889,chrX:34218885 NA NA chrX:17713066,chrX:17713065 chrX:34237006,chrX:34237002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 5 1 10 57 3 ENST00000676302.1 ENST00000668394.1 downstream upstream duplicates(2),mismatches(1) CCGTCTCCAACCTGGACATAGAGAGTAAGCTGAGTGTGTACTACCGCGCCCCGTGGCACCAGCAGCGCAACATCTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCGCCACGCCCGGCAGAGCCTGCAAGCCCTGCGCAGAG___AACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGCAGCTCCTCCACTGCCAGCCTACCCTCCAGCTCACAGCCAGAGGAGGCGTGAGTTTAAGGACCGTCACTTTTTAACG|GTGTGTTCCTGGTGATATGTGGTCA___TAAACCCTTCAGACAGCAATGTG...___CACTTCTCCTTGCTGCTACCATGTGAAGAAGAATGTGTTTT VSNLDIESKLSVYYRAPWHQQRNIFLPATRPPCVEELHRHARQSLQALRREHRSRSDRREQRAAAPLSIAAPPLPAYPPAHSQRRREFKDRHFLT|vcsw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4768 chrX:17425881-17425954:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19368 NHS::ENSG00000233928 ENSG00000188158.17::ENSG00000233928.7 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3345 TRUE 1260 NHS ENSG00000188158.17 protein_coding + + chrX:17375200-17735994:+ chrX:17692468:+ chrX:17393323-17754114:+ chrX:17710588:+ ENSG00000233928 ENSG00000233928.7 lncRNA + + chrX:33726337-34346527:+ chrX:34272558:+ chrX:33744454-34364644:+ chrX:34290675:+ chrX:17694946,chrX:17694945 chrX:34218889,chrX:34218885 NA NA chrX:17713066,chrX:17713065 chrX:34237006,chrX:34237002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 1 0 10 57 8 ENST00000676302.1 ENST00000668394.1 downstream upstream mismatches(1) CCGCGCCCCGTGGCACCAGCAGCGCAACATCTTCCTCCCAGCCACAAGGCCACCCTGCGTGGAGGAGCTGCACCGCCACGCCCGGCAGAGCCTGCAAGCCCTGCGCAGAG___AACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGCAGCTCCTCCACTGCCAGCCTACCCTCCAGCTCACAGCCAGAGGAGGCGTGAGTTTAAGGACCGTCACTTTTTAACG|TAAACCCTTCAGACAGCAATGTGTTGAAAAAGAAGAAGAAAGAAAGCTTTCTTAAAAATTTTCTCACTGATATTCCATTTCTTAAGAGTTGATTTTGTGCATGAGTAATTAGCACAAAATGCTCGTAGACAATAAATATCTATGTGGATAATATCACTAAGCATATGCAATCAAGGCACAGTCTTTTGAAGAACATCATTTTGAGAAGACAGTGCCTAAAGATGACGATTTAAT RAPWHQQRNIFLPATRPPCVEELHRHARQSLQALRREHRSRSDRREQRAAAPLSIAAPPLPAYPPAHSQRRREFKDRHFLT|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4768 chrX:17425881-17425954:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19369 NHS::ENSG00000233928 ENSG00000188158.17::ENSG00000233928.7 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3345 TRUE 1260 NHS ENSG00000188158.17 protein_coding + + chrX:17375200-17735994:+ chrX:17692468:+ chrX:17393323-17754114:+ chrX:17710588:+ ENSG00000233928 ENSG00000233928.7 lncRNA + + chrX:33726337-34346527:+ chrX:34295942:+ chrX:33744454-34364644:+ chrX:34314059:+ chrX:17694946,chrX:17694945 chrX:34218889,chrX:34218885 NA NA chrX:17713066,chrX:17713065 chrX:34237006,chrX:34237002 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 0 2 4 57 3 ENST00000676302.1 ENST00000668394.1 downstream upstream duplicates(1) CTGCAAGCCCTGCGCAGAG___AACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGCAGCTCCTCCACTGCCAGCCTACCCTCCAGCTCACAGCCAGAGGAGGCGTGAGTTTAAGGACCGTCACTTTTTAACG|CACTTCTCCTTGCTGCTACCATGTGAAGAAGAATGTGTTTTCTTCCCCTTCTGCCATGATT___TGGCACTCCTCCA--TCTCTGGGAGATCCAACACTTGAGGGCTTATGAGCCGTTTCAGTATGAATGAAAG LQALRREHRSRSDRREQRAAAPLSIAAPPLPAYPPAHSQRRREFKDRHFLT|hfslllpceeecvffpfchdlallhlweiqhlrayepfqye* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4768 chrX:17425881-17425954:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19371 TRAF2::P3R3URF-PIK3R3 ENSG00000127191.18::ENSG00000278139.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136900520:+ chr9:139776364-139821059:+ chr9:139794972:+ P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - + chr1:46043661-46176488:- chr1:46173205:+ chr1:46509333-46642160:- chr1:46638877:+ chr9:136903207,chr9:136903205 chr1:46141549,chr1:46141547 NA NA chr9:139797659,chr9:139797657 chr1:46607221,chr1:46607219 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Zinc_finger__C3HC4_type_(RING_finger)(100%)| zf-C3HC4(100%),zf-RING_UBOX(100%)| 7 3 4 287 23 ENST00000247668.7 unknown downstream upstream duplicates(2) GGCTTTGTTCGCGGGGGTCACAGCTCTCATGGCTGCAGCTAGCGTGACCCCCCCTGGCTCCCTGGAGTTGCTACAGCCCGGCTTCTCCAAGACCCTCCTGGGGACCAAGCTGGAAGCCAAGTACCTGTGCTCCGCCTGCAGAAACGTCCTCCGCAGGCCCTTCCAGGCGCAGTGTGGCCACCGGTACTGCTCCTTCTGCCTG...CCTTCCCAGATAATGCTGCCCGCAGGGAGGTGGAGAGCCTGCCGGCCGTCTGTCCCAGTGATGGATGCACCTGGAAGGGGACCCTGAAAGAATACGAG|GTTATCTCACCTATGGGAGAAGGAAGAACAGAGAGAGGCAGAGAACATCATCGCAAACGGAGCCCCTGTTACAAGTACTCAGAGACCTCCTCACGATTTAATGAAGAGCTTGTGTAATCTGTGTAATGTGCCTCTCACTaAGC FPDNAARREVESLPAVCPSDGCTWKGTLKEYE|vispmgegrtergrehhrkrspcykysetssrfneelv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4479 chr9:136886733-136886803:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19377 INTS2::TANC2 ENSG00000108506.14::ENSG00000170921.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA INTS2 ENSG00000108506.14 protein_coding - - chr17:61865367-61928016:- chr17:61897469:- chr17:59942728-60005377:- chr17:59974830:- TANC2 ENSG00000170921.16 protein_coding + - chr17:62966235-63427703:+ chr17:63061364:- chr17:61043596-61505064:+ chr17:61138725:- chr17:61896839,chr17:61896843 chr17:63062605,chr17:63062606 NA NA chr17:59974200,chr17:59974204 chr17:61139966,chr17:61139967 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Integrator_complex_subunit_2(43%)| INTS2(49%)| 1 0 10 154 10 ENST00000444766.7 unknown upstream downstream duplicates(2),mismappers(1),mismatches(1) CACTTGTCAG___TACACCTGAACAGGAGCAGCTGATGGTGGTGTGGCTAAGTTGGATGATAAAAGAAGAAGCGTATTTTGAGAG___TACTTCAGGCGTCTCTGCTTCTTTTGGGGAGATGTTATTATTGGTGGCTATGTACTTTCACAGCAACCAGCTTAGTGCTATCATTGACTTGGTCTGTTCCACTTTGGGGATGAAG|ACAGAGTTTCGCTCTTGTCACCCAGGCTGGAGAGCAATGGCGTGATCTCGGCTCACTGCAACTTCCACCTCCTGGATTCAAGCAACTCTCCTGCCTCACCCTCCCCAGTAACTGGGATTACAGGTGCCAGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGAG LVSTPEQEQLMVVWLSWMIKEEAYFESTSGVSASFGEMLLLVAMYFHSNQLSAIIDLVCSTLGMK|tefrschpgwrama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19378 DMD::DCLK2 ENSG00000198947.18::ENSG00000170390.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1807 TRUE 3347 TRUE 1261 DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:32491277:- chrX:31115794-33357726:- chrX:32509394:- DCLK2 ENSG00000170390.16 protein_coding + + chr4:150078445-150257438:+ chr4:150220703:+ chr4:150999597-151178590:+ chr4:151141855:+ chrX:32487314,chrX:32487318 chr4:150212425,chr4:150212421 NA NA chrX:32505431,chrX:32505435 chr4:151133577,chr4:151133573 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(20%)|Protein_kinase_domain(100%) CAMSAP_CH(100%),CH(100%),Spectrin(9%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 2 6 47 108 ENST00000357033.9 ENST00000296550.12 upstream upstream mismatches(1) CTCAGGCCCTGGTGGAACAGATGGTGAATG___AGGGTGTTAATGCAGATAGCATCAAACAAGCCTCAGAACAACTGAACAGCCGGTGGATCGAATTCTGCCAGTTGCTAAGTGAGAGACTTAACTGGCTGGAGTATCAGAACAACATCATCGCTTTCTATAATCAGCTACAACAATTGGAGCAGATGACAACTACTGCTGAAAACTGGTTGAAAATCCAACCCACCACCCCATCAGAGCCAACAGCAATTAAAAGTCAGTTAAAAATTTGTAAG|CAGATTTCTGCTCATGGCAGATCTTCTTCCAATGTAAACGGTGGACCTGAGCTTGACCGTTGCATAAGTCCTGAAG___GTGTGAATGGAAACAGATGCTCTGAATCATCAACTCTTCTTGAGAAATACAAAATTGGAAAGGTCATTGGTGATGGCAATTTTGCAGTAGTCAAAGAGTGTATAGACAG___GTCCACTGGAAAGGAGTTTGCCCTAAAGATTATAGACAAAGCC QALVEQMVNEGVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAFYNQLQQLEQMTTTAENWLKIQPTTPSEPTAIKSQLKICK|QISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEKYKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3915,hsa-mir-548f-5 chrX:32583656-32583752:-,chrX:32641474-32641559:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase DCLK2 CAMK DCAMKL Q8N568 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19379 DMD::DCLK2 ENSG00000198947.18::ENSG00000170390.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3347 TRUE 1261 DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:32491277:- chrX:31115794-33357726:- chrX:32509394:- DCLK2 ENSG00000170390.16 protein_coding + + chr4:150078445-150257438:+ chr4:150220706:+ chr4:150999597-151178590:+ chr4:151141858:+ chrX:32487314,chrX:32487318 chr4:150212425,chr4:150212421 NA NA chrX:32505431,chrX:32505435 chr4:151133577,chr4:151133573 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Calponin_homology_(CH)_domain(100%),Spectrin_repeat(20%)|Protein_kinase_domain(100%) CAMSAP_CH(100%),CH(100%),Spectrin(9%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 0 6 47 108 ENST00000357033.9 ENST00000411937.6 upstream upstream none GAACAGATGGTGAATG___AGGGTGTTAATGCAGATAGCATCAAACAAGCCTCAGAACAACTGAACAGCCGGTGGATCGAATTCTGCCAGTTGCTAAGTGAGAGACTTAACTGGCTGGAGTATCAGAACAACATCATCGCTTTCTATAATCAGCTACAACAATTGGAGCAGATGACAACTACTGCTGAAAACTGGTTGAAAATCCAACCCACCACCCCATCAGAGCCAACAGCAATTAAAAGTCAGTTAAAAATTTGTAAG|ATTTCTGCTCATGGCAGATCTTCTTCCAATGTAAACGGTGGACCTGAGCTTGACCGTTGCATAAGTCCTGAAG___GTGTGAATGGAAACAGATGCTCTGAATCATCAACTCTTCTTGAGAAATACAAAATTGGAA EQMVNEGVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAFYNQLQQLEQMTTTAENWLKIQPTTPSEPTAIKSQLKICK|ISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEKYKIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3915,hsa-mir-548f-5 chrX:32583656-32583752:-,chrX:32641474-32641559:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase DCLK2 CAMK DCAMKL Q8N568 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19382 RPRD1B::ENSG00000284776 ENSG00000101413.12::ENSG00000284776.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPRD1B ENSG00000101413.12 protein_coding + + chr20:38033725-38127780:+ chr20:38040564:+ chr20:36662127-36756182:+ chr20:36668966:+ ENSG00000284776 ENSG00000284776.1 protein_coding + - chr20:18567453-18744216:+ chr20:18700362:- chr20:18548097-18724860:+ chr20:18681006:- chr20:38043248 chr20:18721076 NA NA chr20:36671650 chr20:18701720 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none CID_domain(73%)| CID(27%)| 2 3 4 269 6 ENST00000373433.9 unknown downstream downstream duplicates(2),mismatches(1) AAAAAGTCCCGCAGCCTGTCAGGTGAGGCCCCGGCCTCGTGCCGTCGCTCTTCCCGCCGCACTGGGCGGCCCAGGCCGCTCCCTGCCGGGCCTCACTGCCG...GTGCAGACCCTGTCCCTTTGGCTCATCCACCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACCGCGAGCTCCGCAAAG___CCAAATCAAATAGAAAGCTTACTTTTCTGTATTTAGCGAATGATGTCATCCAAAACAGTAAAAGGAAAGGACCTGAATTCACTAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCTCATGTTGCCAG|AGGCTACTGAAGACAGTCAAATGATGAGCCACTAAAAAGAACCTGTGTTTTAAGAAGTCCATTTAAGAAATGTTCTCTTGAGAAACAAACAAATAGTAACTTTCCAGCAGAGAAACCTGACTGATACCATCTTGACCAAGTGAGTGATCAAGGTCAGCATCAGTAGTCATGAGACACATCAATACCATGTGCCCTGACATGGCACACCAAGGACATCAAATTCCCAAACTAAGGGACATTCTAAAAAATAACTGGCCTGTGTCTTCAGAAGTATCAAGATCGTAAGACTGGAGGAGGCTGAGAC VQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAr|gy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19383 RPRD1B::DTD1 ENSG00000101413.12::ENSG00000125821.13 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPRD1B ENSG00000101413.12 protein_coding + + chr20:38033725-38127780:+ chr20:38040564:+ chr20:36662127-36756182:+ chr20:36668966:+ DTD1 ENSG00000125821.13 protein_coding + - chr20:18587942-18766644:+ chr20:18700362:- chr20:18568586-18747288:+ chr20:18681006:- chr20:38043248 chr20:18721076 NA NA chr20:36671650 chr20:18701720 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none CID_domain(73%)| CID(27%)| 2 3 4 269 6 ENST00000373433.9 unknown downstream downstream duplicates(2),mismatches(1) AAAAAGTCCCGCAGCCTGTCAGGTGAGGCCCCGGCCTCGTGCCGTCGCTCTTCCCGCCGCACTGGGCGGCCCAGGCCGCTCCCTGCCGGGCCTCACTGCCG...GTGCAGACCCTGTCCCTTTGGCTCATCCACCACCGCAAGCACGCGGGACCCATCGTCTCCGTGTGGCACCGCGAGCTCCGCAAAG___CCAAATCAAATAGAAAGCTTACTTTTCTGTATTTAGCGAATGATGTCATCCAAAACAGTAAAAGGAAAGGACCTGAATTCACTAGAGAATTTGAATCTGTCCTTGTGGATGCTTTTTCTCATGTTGCCAG|AGGCTACTGAAGACAGTCAAATGATGAGCCACTAAAAAGAACCTGTGTTTTAAGAAGTCCATTTAAGAAATGTTCTCTTGAGAAACAAACAAATAGTAACTTTCCAGCAGAGAAACCTGACTGATACCATCTTGACCAAGTGAGTGATCAAGGTCAGCATCAGTAGTCATGAGACACATCAATACCATGTGCCCTGACATGGCACACCAAGGACATCAAATTCCCAAACTAAGGGACATTCTAAAAAATAACTGGCCTGTGTCTTCAGAAGTATCAAGATCGTAAGACTGGAGGAGGCTGAGAC VQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAr|gy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19384 PTPRM::ENSG00000266573 ENSG00000173482.17::ENSG00000266573.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3348 TRUE 1262 PTPRM ENSG00000173482.17 protein_coding + + chr18:7566782-8406861:+ chr18:8253414:+ chr18:7566780-8406859:+ chr18:8253412:+ ENSG00000266573 ENSG00000266573.6 lncRNA + + chr18:24725762-24986980:+ chr18:24909788:+ chr18:22305726-22566944:+ chr18:22489752:+ chr18:8260313,chr18:8260313 chr18:24821648,chr18:24821645 NA NA chr18:8260311,chr18:8260311 chr18:22401612,chr18:22401609 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Fibronectin_type_III_domain(100%),Immunoglobulin_domain(100%),MAM_domain__meprin/A5/mu(100%),TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(100%)| MAM(100%),fn3(100%),ig(100%)| 3 1 4 47 9 ENST00000332175.12 ENST00000577354.6 downstream upstream none ATCGGTGCCTAATTCCTATTACCCAG___ATGAAACCCACACAATGGCCAGCGATACCAGCAGCCTGGTGCAGTCCCATACTTACAAGAAGCGAGAGCCGGCCGACGTGCCCTATCAGACTGGGCAGCTCCACCCCGCCATCCGGGTGGCAGACCTCCTTCAGCACATCACACAGATGAAGTGTGCGGAGGGCTACGGCTTCAAGGAGGAATACGAG|GGGCCATCCATGGAGGGCTGGATGGTGTCCTCACTCTCCCATCACACAGCTCTTCTGATGATGTTTTTGCT...AAGTTCGCTCTGATCCAAAATTACATCTGCAAGGGGCAGCTGAAGTCCATCAGTTCTGTGAAGTCTTCTGGGAGTTGCCTCAGCCTAGAGATCTCTTCCTCCATTTCTCCAAATATTTCAGTTAGC SVPNSYYPDETHTMASDTSSLVQSHTYKKREPADVPYQTGQLHPAIRVADLLQHITQMKCAEGYGFKEEYE|gpsmegwmvsslshhtallmmfl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19385 PTPRM::ENSG00000266573 ENSG00000173482.17::ENSG00000266573.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3348 TRUE 1262 PTPRM ENSG00000173482.17 protein_coding + + chr18:7566782-8406861:+ chr18:8253414:+ chr18:7566780-8406859:+ chr18:8253412:+ ENSG00000266573 ENSG00000266573.6 lncRNA + + chr18:24725762-24986980:+ chr18:24935982:+ chr18:22305726-22566944:+ chr18:22515946:+ chr18:8260313,chr18:8260313 chr18:24821648,chr18:24821645 NA NA chr18:8260311,chr18:8260311 chr18:22401612,chr18:22401609 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Fibronectin_type_III_domain(100%),Immunoglobulin_domain(100%),MAM_domain__meprin/A5/mu(100%),TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(100%)| MAM(100%),fn3(100%),ig(100%)| 2 0 1 47 6 ENST00000332175.12 ENST00000654065.1 downstream upstream mismatches(1) CTGCGACGAGGCTTTCTCATTCATGGACACGCACAATCTGAATGGGAGAT___CTGTGTCTTCACCATCGTCCTTCACAATGAAAACAAATgtAaTGAGCACA...GCCCTATCAGACTGGGCAGCTCCACCCCGCCATCCGGGTGGCAGACCTCCTTCAGCACATCACACAGATGAAGTGTGCGGAGGGCTACGGCTTCAAGGAGGAATACGAG|GGGACCTCTGAGGGTCTATTTGAGGGCATGAATATGGAAAATTCAGCTCCAGCTCCTCCACCCCACTCCCTGAACAGCACTGCAG PYQTGQLHPAIRVADLLQHITQMKCAEGYGFKEEYE|gtseglfegmnmensapappphslnsta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19386 PTPRM::ENSG00000266573 ENSG00000173482.17::ENSG00000266573.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3348 TRUE 1262 PTPRM ENSG00000173482.17 protein_coding + + chr18:7566782-8406861:+ chr18:8253414:+ chr18:7566780-8406859:+ chr18:8253412:+ ENSG00000266573 ENSG00000266573.6 lncRNA + + chr18:24725762-24986980:+ chr18:24927838:+ chr18:22305726-22566944:+ chr18:22507802:+ chr18:8260313,chr18:8260313 chr18:24821648,chr18:24821645 NA NA chr18:8260311,chr18:8260311 chr18:22401612,chr18:22401609 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Fibronectin_type_III_domain(100%),Immunoglobulin_domain(100%),MAM_domain__meprin/A5/mu(100%),TM_proximal_of_protein_tyrosine_phosphatase__receptor_type_J(100%)| MAM(100%),fn3(100%),ig(100%)| 1 0 1 47 1 ENST00000332175.12 ENST00000582650.5 downstream upstream none CTTCACCATCGTCCTTCACAATGAAAACAAATACACTGAGCACATCGGTGCCTAATTCCTATTACCCAG___ATGAAACCCACACAATGGCCAGCGATACCAGC...GGCAGACCTCCTTCAGCACATCACACAGATGAAGTGTGCGGAGGGCTACGGCTTCAAGGAGGAATACGAG|CCACCGGAGAGGCCCTCGATTAAAGTTGGAG ADLLQHITQMKCAEGYGFKEEYE|pperpsikvg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19387 AAAS::LEMD3 ENSG00000094914.14::ENSG00000174106.3 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AAAS ENSG00000094914.14 protein_coding - - chr12:53307456-53324864:- chr12:53314298:- chr12:53701240-53718648:- chr12:53708082:- LEMD3 ENSG00000174106.3 protein_coding + - chr12:65169583-65248355:+ chr12:65172125:- chr12:65563363-65642135:+ chr12:65565905:- chr12:53314072,chr12:53314077 chr12:65173296,chr12:65173298 NA NA chr12:53707856,chr12:53707861 chr12:65567076,chr12:65567078 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 2 1 5 318 10 ENST00000550286.5 unknown upstream downstream duplicates(1) GGGCCTTTTTGGGGTGCTAAATGAAATTGCAAACTCAGAAGAAGAGG___TGTTTGAGTGGGgGAAGACGGCATCCGGCTGGGCCCTtGCACTCTGTCGATGG...CTGCTAGATGACTCAGTCCGTGTGTATAATGCCAGCAG___CACCATAGTCCCCTCCCTGAAGCACCGGCTGCAGCGAAATGTGGCGTCTCTGGCCTGGAAGCCCCTTAGTGCCTCTGTCTTGGCTGTGGCCTGCCAGAGCTGCATTCTTATCTGGACCCTGGACCCTACCTCCTTGTCTACCCG|GTGCTTAACCACTCTAACCTACAAGAAGGCTCTTGCTCAACTCAAGGCCTTAATCTCTGCTCAGAATGGTCTACTGTTTCTCCACAAGGCTGTCTCCTTCTGCTTCAGGTCTCACCTCAAATAGTACCTCCTCCGTTCAATCTAAAGTAGTGTACACCTACGTCAGTGTAGTCTGGTAAATTTTTTTAAAAAAG LLDDSVRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTr|clttltykkalaqlkalisaqngllflhkavsfcfrshlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19388 CUX1::CDHR3 ENSG00000257923.12::ENSG00000128536.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3349 TRUE 1263 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101816093:+ chr7:101459184-101927250:+ chr7:101459373:+ CDHR3 ENSG00000128536.16 protein_coding + + chr7:105876796-106036432:+ chr7:105911017:+ chr7:105517242-105676878:+ chr7:105551463:+ chr7:101855642,chr7:101855642 chr7:105893010,chr7:105893001 NA NA chr7:101498922,chr7:101498922 chr7:105533456,chr7:105533447 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none |Cadherin_domain(100%) |Cadherin(100%) 2 6 0 243 68 ENST00000437600.9 ENST00000470188.5 downstream upstream duplicates(1),mismatches(1) GTCCGCGTCCTCGGTGGCGGCGGCGGCGGCCGGCTCCAGGCCGGGTTTTGGCGCCGCCCGCCTGCTGCCTCCTGGCGGCTCCTGAACTCCAGCCCCCTCTC...ATATGTCTCAAGATGGCGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG|TTCTTCTTTTTGTAAAGGTGTGTCCTGAGGAACCTCAGATTTGAAAGAAGAGTGAATGGAAGTCAAATGTGGAAACCACTCAAATGTCCATCAACTGATGAATGAATAAACAAATCATGGTATATCCATACAAGGAATATTATTCACCCATAAAAAG MAANVGSMFQYWKRFDLQQLQ|fffl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 19389 CUX1::CDHR3 ENSG00000257923.12::ENSG00000128536.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3349 TRUE 1263 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101816093:+ chr7:101459184-101927250:+ chr7:101459373:+ CDHR3 ENSG00000128536.16 protein_coding + + chr7:105876796-106036432:+ chr7:105910227:+ chr7:105517242-105676878:+ chr7:105550673:+ chr7:101855642,chr7:101855642 chr7:105893010,chr7:105893001 NA NA chr7:101498922,chr7:101498922 chr7:105533456,chr7:105533447 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none |Cadherin_domain(100%) |Cadherin(100%) 0 3 0 243 36 ENST00000437600.9 ENST00000487084.1 downstream upstream duplicates(2) CGGCCAATGTGGGATCGATGTTTCAATATTGGAAGCGCTTTGATTTACAGCAGCTGCAG|AGAGCTGTGATCACTTGAGGGTGTCATGTCAACCTTGTCTCATGCACCAGCTGAATTCAGTGACACTAACATCCTGGATCCTGCAGATGAGAGTATTATGACTGCACTACCAGGGAGGCTGCCCAGGGCTGGAGATTGCTCTGCTCCAGAGGTGCTTGGTTTGCAG...GTGGTTtTTTTTTTTTTTTTTTCTGAGATGGAGTTTCTCTCTTTTTGCCCAGGCTGGCGTGCAgTGGTGTGATCTCGGCTTACCACAACCTCCACCTCCC ANVGSMFQYWKRFDLQQLQ|ravit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 19390 AREL1::ENSG00000258526 ENSG00000119682.18::ENSG00000258526.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AREL1 ENSG00000119682.18 protein_coding - - chr14:74653437-74713117:- chr14:74692041:- chr14:75120140-75179820:- chr14:75158744:- ENSG00000258526 ENSG00000258526.8 lncRNA + - chr14:39432599-40390547:+ chr14:39520543:- chr14:39901803-40859751:+ chr14:39989747:- chr14:74687011,chr14:74687015 chr14:39576399,chr14:39576400 NA NA chr14:75153714,chr14:75153718 chr14:40045603,chr14:40045604 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 1 2 4 289 6 ENST00000557401.5 unknown upstream downstream duplicates(1),mismatches(1) CTGGGGCGTCCTTTGGCAGTCGATTGCACCCTGCACTAGAGAGAAGTCCAGGAATGATATATTCTTGGGCTGTATTTCTCTACCCTGGAGTTCATCCAGTTCATCCCAGAAACACTGACCTGATTACTGTGACAAAGTCTGATGGATAGACCCTTTCTGTTGACCTTGTGGCGTTTTTCTTTCATGTGGAAGTTGGAAGACAAGGTGAAAGGGGCCAAAAGTTACCTGCTTTGGTGAATAGGAGTGCTCTACTTGGTTCTCAGAACATGGGCCCTCGTTTAAAG|ATTGAGGAGGTACATGTGCTGGTTTGTTAC...GGGCATATgGCgTGATtCTGAAGTTTGTGATACAAATAATCCCATAACCCAG___...GAGGGAGGAAGAAACTGAATGAAGAAAGGATGATTTGAAATTACCAGAAAGTGGTAATTTATTCTCATTTGAGGATAAAATCTTAGGTTGcTACATCTTCA...___ATGTGAtCACATtACCATGGTACCCACTGTTTCTATCACAAAATGCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19391 PRH1::PPP4R3B ENSG00000231887.9::ENSG00000275052.5 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRH1 ENSG00000231887.9 protein_coding - - chr12:10824960-11171608:- chr12:11171422:- chr12:10977559-11324207:- chr12:11324021:- PPP4R3B ENSG00000275052.5 protein_coding - + chr2:55547292-55618880:- chr2:55617635:+ chr2:55774428-55846015:- chr2:55844770:+ chr12:11168823,chr12:11168832 chr2:55611287,chr2:55611285 NA NA chr12:11321422,chr12:11321431 chr2:55838423,chr2:55838421 NA NA sense antisense unknown exon/splice-site exon translocation/5'-5' high none none DUF4560(71%)| 1 0 6 420 242 ENST00000546265.1 unknown upstream upstream duplicates(1),mismatches(3) CCCGGAGGCCGTTAGCTTAGTCATGGCTCTAAATATGTACCTGCAATCGGATGTTGAGGATCACCGAGCCCGCGACGTAGAAGTACGGGAAGTTCATGCGCAGCTGCCAGGCCAGCTCGAAGAAGGCGAGCAGGGTGCGGGAGAGCCCCTTGCAGAAGACGCCGTACGAG|GCTCGCACGGGCTGTCCTAGCAGGGGCTACGGCGGCCGACAAGTCCCATGAGCAGCACCTCCGCTTCTGCACGCGCTTCCCAGGCCGGAATGCTCGGCGCTCTCGCGAGGAGGGGTACCGACTGGGGCGGGAGTACTTCGGCGAGACTTCCTCCTCTTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19392 ENSG00000275778::PPP4R3B ENSG00000275778.3::ENSG00000275052.5 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000275778 ENSG00000275778.3 protein_coding - - chr12:10845849-11171600:- chr12:11171422:- chr12:10998448-11324199:- chr12:11324021:- PPP4R3B ENSG00000275052.5 protein_coding - + chr2:55547292-55618880:- chr2:55617635:+ chr2:55774428-55846015:- chr2:55844770:+ chr12:11168823,chr12:11168832 chr2:55611287,chr2:55611285 NA NA chr12:11321422,chr12:11321431 chr2:55838423,chr2:55838421 NA NA sense antisense unknown 5'UTR/splice-site exon translocation/5'-5' high none none DUF4560(71%)| 1 0 6 420 242 ENST00000536668.2 unknown upstream upstream duplicates(1),mismatches(3) CCCGGAGGCCGTTAGCTTAGTCATGGCTCTAAATATGTACCTGCAATCGGATGTTGAGGATCACCGAGCCCGCGACGTAGAAGTACGGGAAGTTCATGCGCAGCTGCCAGGCCAGCTCGAAGAAGGCGAGCAGGGTGCGGGAGAGCCCCTTGCAGAAGACGCCGTACGAG|GCTCGCACGGGCTGTCCTAGCAGGGGCTACGGCGGCCGACAAGTCCCATGAGCAGCACCTCCGCTTCTGCACGCGCTTCCCAGGCCGGAATGCTCGGCGCTCTCGCGAGGAGGGGTACCGACTGGGGCGGGAGTACTTCGGCGAGACTTCCTCCTCTTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19395 NHS::ENSG00000233571 ENSG00000188158.17::ENSG00000233571.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NHS ENSG00000188158.17 protein_coding + + chrX:17375200-17735994:+ chrX:17692468:+ chrX:17393323-17754114:+ chrX:17710588:+ ENSG00000233571 ENSG00000233571.1 lncRNA - + chrX:34206725-34415537:- chrX:34220876:+ chrX:34224842-34433654:- chrX:34238993:+ chrX:17694946,chrX:17694945 chrX:34218889,chrX:34218885 NA NA chrX:17713066,chrX:17713065 chrX:34237006,chrX:34237002 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 1 0 3 57 3 ENST00000676302.1 unknown downstream upstream none CACGCTTGACCCTAAGCAGGAGGCAGTGC___CCGTCTCCAACCTGGACATAGAGAGTAAGCTGAGTGTGTACTACCGCGCCCCGTGGCACCAGCAGCGCAACA...CAAGGCCACCCTGCGTGGAGGAGCTGCACCGCCACGCCCGGCAGAGCCTGCAAGCCCTGCGCAGAG___AACACCGGAGCCGGAGCGATCGCCGAGAGCAAAGAGCAGCTGCCCCCCTTTCCATTGCAGCTCCTCCACTGCCAGCCTACCCTCCAGCTCACAGCCAGAGGAGGCGTGAGTTTAAGGACCGTCACTTTTTAACG|GATGTGTAGGAAGAATGGCACTGGCATCTGCTCAGCTTCTGGGGATGCCTGAGGGAGCTTTTACTCATGGCAGAAGAGGAAGTGGGAGCAGGCATCTCACATGGCAAGAACCGGAGAGAGGCGGGAGATGCCACACACTTTTAAATGACCAGACCTCCC RPPCVEELHRHARQSLQALRREHRSRSDRREQRAAAPLSIAAPPLPAYPPAHSQRRREFKDRHFLT|dv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4768 chrX:17425881-17425954:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19396 ETV6::A2ML1-AS1 ENSG00000139083.11::ENSG00000256661.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ETV6 ENSG00000139083.11 protein_coding + + chr12:11649674-11895377:+ chr12:11869969:+ chr12:11802608-12048311:+ chr12:12022903:+ A2ML1-AS1 ENSG00000256661.1 lncRNA - - chr12:8776219-8830947:- chr12:8776384:- chr12:8928815-8983543:- chr12:8928980:- chr12:11879907,chr12:11879906 chr12:8819091,chr12:8819092 NA NA chr12:12032841,chr12:12032840 chr12:8971687,chr12:8971688 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Sterile_alpha_motif_(SAM)/Pointed_domain(100%)| SAM_PNT(100%)| 2 0 2 207 39 ENST00000396373.9 ENST00000537288.1 downstream downstream none ATCCAGCCCCCGGCAGGAGAGCACACGCGTGATCCAGCTGATGCCCAGCCCCATCATGCACCCTCTGATCCTGAACCCCCGGCACTCCGTGGATTTCAAACAGTCCAGGCTCTCCGAGGACGGGCTGCATAGGGAAGGGAAGCCCATCAACCTCTCTCATCGGGAAGACCTGGCTTACATGAACCACATCATGGTCTCTGTCTCCCCGCCTGAAGAGCACGCCATGCCCATTGGGAGAATAGCAG|GTACTTCCAGAATGATTTGCTCTTATTCTCTACCTCAATCTTGAAGGAATTCAAGAAGATATCCATGTTTTTAAAATCTAAGATAACTACTGCTCTTTTCATTCTAACATGTGAGTGTACGTTTTAATATCATGTG SSPRQESTRVIQLMPSPIMHPLILNPRHSVDFKQSRLSEDGLHREGKPINLSHREDLAYMNHIMVSVSPPEEHAMPIGRIA|gtsrmicsyslpqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ets variant gene 6 (TEL oncogene) 1 Yes congenital fibrosarcoma, multiple different leukaemia and lymphoma tumour types including ALL, secretory breast, MDS leukaemia_lymphoma, epithelial, mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19397 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111487238:- chr7:110302700-111202573:- chr7:111127294:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111769677:- chr7:111366166-111846462:- chr7:111409733:- chr7:111411929 chr7:111775345 NA NA chr7:111051985 chr7:111415401 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Signal_peptidase__peptidase_S26_(48%)|DHR-2__Lobe_A(73%) Peptidase_S26(5%)|DHR-2(57%) 0 3 1 149 91 ENST00000405709.7 ENST00000437633.6 upstream downstream none ATCTGATGTGGTGCTTTTGAACCACTGGAAAGTGAGGAATTTTGAAGTACACCGTGGTGACATTGTATCATTGGT|AAGCTGCATATACCCTCCTCTTATATGACGAGCTACTGGAATGGTCTGATCGGCCCCTCAGGGAGTTCCTGACCTACCCCATGCAAACAGAATGGCAGCGCAAAGAGCACCTGCACCTCACCATCATCCAGAACTTTGACAGAGGCAAA___TGTTGGGAGAATGGCATTATCTTGTGCCGG...AGTTTGTGTGTCGAGGGCATGACTACGAGAGGCTGGAAGCCTTCCAACAGAGAATGCTGAACGAGTTCCCCCATGCCATCGCCATGCAGCACGCCAACCAG SDVVLLNHWKVRNFEVHRGDIVSLv|sciyppli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 FALSE,TRUE,FALSE 111644186,111452005,111409733 FALSE,FALSE,TRUE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19399 PARD3::CUL2 ENSG00000148498.17::ENSG00000108094.17 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3350 TRUE 1264 PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814045:- chr10:34398488-35104253:- chr10:35102973:- CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35016396:- chr10:35297432-35415934:- chr10:35305324:- NA NA NA NA NA NA NA NA sense sense unknown intron intron duplication high none N-terminal_of_Par3_and_HAL_proteins(48%)|Cullin_family(13%),Cullin_protein_neddylation_domain(100%) Par3_HAL_N_term(0%)|Cullin(7%),Cullin_Nedd8(100%) 0 1 3 1 490 unknown ENST00000626172.3 upstream downstream duplicates(3) ATCCCGGGCTGGTTCCATGTGGCTGGGCTGCGGGGCCGGGCCTGACTTGGG|AGGTGAAGTTAAAATGAACTATTTGGGCAAACCATATGTAGCCATGGTTACAACATACCAAATGGCAGTTCTTCTTGCCTTTAACAACAGTGAAACTGTCAGTTATAAAGAGCTTCAGGACAGCACTCAGATGAATGAAAAGGAACTGACAAAAACAATCAAATCATTACTTGATGTGAAAATGATTAACCATGATTCAGAAAAG___GAAGATATTGATGCAGAATCTTCGTTTTCATTAAATATGAACTTTAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Bladder Urothelial Carcinoma,Breast invasive carcinoma BLADDER,BREAST no_match 34985246,34985246 FALSE,FALSE 35360267,35305322 FALSE,TRUE YES,YES CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19400 PARD3::CUL2 ENSG00000148498.17::ENSG00000108094.17 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3350 TRUE 1264 PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814876:- chr10:34398488-35104253:- chr10:35103804:- CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35016394:- chr10:35297432-35415934:- chr10:35305322:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none N-terminal_of_Par3_and_HAL_proteins(48%)|Cullin_family(13%),Cullin_protein_neddylation_domain(100%) Par3_HAL_N_term(0%)|Cullin(7%),Cullin_Nedd8(100%) 0 3 0 235 490 ENST00000545260.5 ENST00000626172.3 upstream downstream duplicates(1),mismatches(1) CACATGAAAGTTTTCAGCCTCATCCAGCAGGCGGTGACCCGCTACCGGAAGGCCATCGCCAAG|GTGAAGTTAAAATGAACTATTTGGGCAAACCATATGTAGCCATGGTTACAACATACCAAATGGCAGTTCTTCTTGCCTTTAACAACAGTGAAACTGTCAGTTATAAAGAGCTTCAGGACAGCACTCAGATGAATGAAAAGGAACTGACAAAAACAATCAAATCATTACTTGATGTGAAAATGATTAACCATGATTCAGAAAAG___GAAGATATTGATGCAGAATCTTCGTTTTCATTAAATATGAACTTTAGCAGTAAAAGAACAAAATTTAAAATTACTACATCAATGCAGAAAGA HMKVFSLIQQAVTRYRKAIAK|vklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Bladder Urothelial Carcinoma,Breast invasive carcinoma BLADDER,BREAST no_match 34985246,34985246 FALSE,FALSE 35360267,35305322 FALSE,TRUE YES,YES CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19401 PPP4R3B::NRXN1 ENSG00000275052.5::ENSG00000179915.25 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP4R3B ENSG00000275052.5 protein_coding - - chr2:55547292-55618880:- chr2:55598416:- chr2:55774428-55846015:- chr2:55825552:- NRXN1 ENSG00000179915.25 protein_coding - - chr2:49918503-51225575:- chr2:50307835:- chr2:50145641-51452713:- chr2:50534973:- chr2:55592780,chr2:55592782 chr2:50331044,chr2:50331046 NA NA chr2:55819916,chr2:55819918 chr2:50558182,chr2:50558184 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Phosphatase_4_regulatory_subunit_3(72%)|Laminin_G_domain(17%),Syndecan_domain(100%) SMK-1(3%)|Laminin_G_1(20%),Laminin_G_2(39%),Syndecan(100%) 2 0 1 281 0 ENST00000616407.2 unknown upstream downstream none GAAAACACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTTTTTGAGGTAATGTTTTCTGATGAGTGTAT...AATACATCAGACTTACAGGGTACAGTACATTCAGGACATCATTTTGCCCACACCATCTGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTTTTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAG|TGTTCATACAACTATTCCAGAGCTTTGGGTATAAATCCACGGAAAA IHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQ|csynysralginprk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19405 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1809 TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- chr8:128061145,chr8:128072938,chr8:128079986,chr8:128079987,chr8:128103284,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:127933159,chr8:128061096,chr8:127922047,chr8:128152808,chr8:128152811,chr8:128152816,chr8:128152819,chr8:128152826,chr8:128152832,chr8:128152838,chr8:128152840,chr8:128152843,chr8:128152847,chr8:128152860,chr8:128152869,chr8:128152872,chr8:128072934,chr8:127921812,chr8:127921812,chr8:128103285 chr8:127705229,chr8:127720696,chr8:127726663,chr8:127726978,chr8:127730890,chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336,chr8:127703667,chr8:127705963,chr8:127705963,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127720552,chr8:127705083,chr8:127705073,chr8:127730889 NA NA chr8:129073391,chr8:129085184,chr8:129092232,chr8:129092233,chr8:129115530,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:128945405,chr8:129073342,chr8:128934293,chr8:129165054,chr8:129165057,chr8:129165062,chr8:129165065,chr8:129165072,chr8:129165078,chr8:129165084,chr8:129165086,chr8:129165089,chr8:129165093,chr8:129165106,chr8:129165115,chr8:129165118,chr8:129085180,chr8:128934058,chr8:128934058,chr8:129115531 chr8:128717474,chr8:128732942,chr8:128738909,chr8:128739224,chr8:128743136,chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582,chr8:128715912,chr8:128718208,chr8:128718208,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128732798,chr8:128717328,chr8:128717318,chr8:128743135 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 8 2 31 6459 20 ENST00000651587.1 ENST00000519071.6 downstream downstream duplicates(3) ACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAGATCCCCAGAGGCAATTGTCCACCTGACTTCAGAATCAGAAGTAGCTCTGCTTTTCCTGAGAAGTGGTGCGGGTTTTGCCTTATGGATGCTAACTGAGACTGGAACATGTTCCCTTTTTTGTATCAGCTGCTGGTACAAAATTGAGAGTTGAGAGCCAAAACTGTACCCTTATCACCTGTCAGTAACTTAAG___GAGGAAGTCAGCTACCATGCCTCCAGGACACTCAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19406 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127700839:- chr8:128698588-128751233:- chr8:128713084:- chr8:128061145,chr8:128072938,chr8:128079986,chr8:128079987,chr8:128103284,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:127933159,chr8:128061096,chr8:127922047,chr8:128152808,chr8:128152811,chr8:128152816,chr8:128152819,chr8:128152826,chr8:128152832,chr8:128152838,chr8:128152840,chr8:128152843,chr8:128152847,chr8:128152860,chr8:128152869,chr8:128152872,chr8:128072934,chr8:128103285,chr8:127921812,chr8:127921812 chr8:127705229,chr8:127720696,chr8:127726663,chr8:127726978,chr8:127730890,chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336,chr8:127703667,chr8:127705963,chr8:127705963,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127720552,chr8:127730889,chr8:127705083,chr8:127705073 NA NA chr8:129073391,chr8:129085184,chr8:129092232,chr8:129092233,chr8:129115530,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:128945405,chr8:129073342,chr8:128934293,chr8:129165054,chr8:129165057,chr8:129165062,chr8:129165065,chr8:129165072,chr8:129165078,chr8:129165084,chr8:129165086,chr8:129165089,chr8:129165093,chr8:129165106,chr8:129165115,chr8:129165118,chr8:129085180,chr8:129115531,chr8:128934058,chr8:128934058 chr8:128717474,chr8:128732942,chr8:128738909,chr8:128739224,chr8:128743136,chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582,chr8:128715912,chr8:128718208,chr8:128718208,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128732798,chr8:128743135,chr8:128717328,chr8:128717318 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 21 6459 50 ENST00000651587.1 ENST00000519071.6 downstream downstream duplicates(1) ACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAGGAAGTCAGCTACCATGCCTCCAGGACACTCAAGTAACCCCATGGAGATGACATTGCAGAGAAGAACTGGTCGAAAGCCAGTACCCACTTTGCCATCTGTGTGAACAATCCACCTTTGAGTGGGTCCTCCAGCCCACATCAAGCCTTCATATAACAGCAGTCCTGAAGGACATTTTATTGTAACCTCGTGAAAATCGAAGTAGGAACTCACCAGCCAAGTTGCTCCTGAATTCTGCAGGCGTAAAACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19407 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1810 TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844 chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336 NA NA chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090 chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 9 4 8 9629 26 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(6) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCCCCGACCCCAACACCTTCTTTGAACATCTCTTTCTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19408 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127699559:- chr8:128698588-128751233:- chr8:128711804:- chr8:128061145,chr8:128072938,chr8:128079986,chr8:128079987,chr8:128103284,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:127933159,chr8:128061096,chr8:127922047,chr8:128152808,chr8:128152811,chr8:128152816,chr8:128152819,chr8:128152826,chr8:128152832,chr8:128152838,chr8:128152840,chr8:128152843,chr8:128152847,chr8:128152860,chr8:128152869,chr8:128152872,chr8:128072934,chr8:128103285,chr8:127921812,chr8:127921812 chr8:127705229,chr8:127720696,chr8:127726663,chr8:127726978,chr8:127730890,chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336,chr8:127703667,chr8:127705963,chr8:127705963,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127720552,chr8:127730889,chr8:127705083,chr8:127705073 NA NA chr8:129073391,chr8:129085184,chr8:129092232,chr8:129092233,chr8:129115530,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:128945405,chr8:129073342,chr8:128934293,chr8:129165054,chr8:129165057,chr8:129165062,chr8:129165065,chr8:129165072,chr8:129165078,chr8:129165084,chr8:129165086,chr8:129165089,chr8:129165093,chr8:129165106,chr8:129165115,chr8:129165118,chr8:129085180,chr8:129115531,chr8:128934058,chr8:128934058 chr8:128717474,chr8:128732942,chr8:128738909,chr8:128739224,chr8:128743136,chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582,chr8:128715912,chr8:128718208,chr8:128718208,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128732798,chr8:128743135,chr8:128717328,chr8:128717318 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 17 6459 31 ENST00000651587.1 ENST00000672637.1 downstream downstream duplicates(1) ACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAGTCTGAGAATATCTGTTGACCAGAGATAAACTATCGGGAGGCTTTGAAGTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19409 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844 chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336 NA NA chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090 chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 8 2073 26 ENST00000662410.1 ENST00000672942.1 downstream downstream duplicates(1) CAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___AGACACAAAAGGGAAGATTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCCCCGACCCCAACACCTTCTTTGAACATCTCTTTCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19410 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127689423:- chr8:128698588-128751233:- chr8:128701668:- chr8:127982639,chr8:127982699,chr8:128029548,chr8:128061145,chr8:128072938,chr8:128079986,chr8:128079987,chr8:128103284,chr8:128156865,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128029621,chr8:127962188,chr8:127982636,chr8:128156780,chr8:127955875,chr8:127962265,chr8:128063365,chr8:128063368,chr8:128063369,chr8:128063376,chr8:128063381,chr8:128063382,chr8:128063387,chr8:128029606,chr8:128063402,chr8:128063404,chr8:128063406,chr8:128063408,chr8:128063417,chr8:128063427,chr8:128063429,chr8:128063416,chr8:127933159,chr8:128061096,chr8:127922047,chr8:127916834,chr8:128152808,chr8:128152811,chr8:128152816,chr8:128152819,chr8:128152826,chr8:128152832,chr8:128152838,chr8:128152840,chr8:128152843,chr8:128152847,chr8:128152860,chr8:128152869,chr8:128152872,chr8:128072934,chr8:128103285,chr8:127921812,chr8:127921812 chr8:127690818,chr8:127690666,chr8:127690710,chr8:127705229,chr8:127720696,chr8:127726663,chr8:127726978,chr8:127730890,chr8:127690096,chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336,chr8:127690696,chr8:127690696,chr8:127690821,chr8:127690926,chr8:127690926,chr8:127690926,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689855,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689846,chr8:127689910,chr8:127689910,chr8:127703667,chr8:127705963,chr8:127705963,chr8:127690754,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127720552,chr8:127730889,chr8:127705083,chr8:127705073 NA NA chr8:128994885,chr8:128994945,chr8:129041794,chr8:129073391,chr8:129085184,chr8:129092232,chr8:129092233,chr8:129115530,chr8:129169111,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129041867,chr8:128974434,chr8:128994882,chr8:129169026,chr8:128968121,chr8:128974511,chr8:129075611,chr8:129075614,chr8:129075615,chr8:129075622,chr8:129075627,chr8:129075628,chr8:129075633,chr8:129041852,chr8:129075648,chr8:129075650,chr8:129075652,chr8:129075654,chr8:129075663,chr8:129075673,chr8:129075675,chr8:129075662,chr8:128945405,chr8:129073342,chr8:128934293,chr8:128929080,chr8:129165054,chr8:129165057,chr8:129165062,chr8:129165065,chr8:129165072,chr8:129165078,chr8:129165084,chr8:129165086,chr8:129165089,chr8:129165093,chr8:129165106,chr8:129165115,chr8:129165118,chr8:129085180,chr8:129115531,chr8:128934058,chr8:128934058 chr8:128703063,chr8:128702911,chr8:128702955,chr8:128717474,chr8:128732942,chr8:128738909,chr8:128739224,chr8:128743136,chr8:128702341,chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582,chr8:128702941,chr8:128702941,chr8:128703066,chr8:128703171,chr8:128703171,chr8:128703171,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702100,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702091,chr8:128702155,chr8:128702155,chr8:128715912,chr8:128718208,chr8:128718208,chr8:128702999,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128732798,chr8:128743135,chr8:128717328,chr8:128717318 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 1 4 6459 108 ENST00000651587.1 ENST00000502463.7 downstream downstream duplicates(2) CATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATG...CGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGAT...GTTCCATCCGGCGCTCAGCTGGGCTTGAG|GAGAAGTCAGGCACCATGTTATGAGGACACTCAAGCAACCCTGTAGAAAGTTCCATGTGGTGAGGAACTGATACCTCCAATCCATGGCCAGTACCAATTTACTTAGCAT___GCTGGAGTGCAATGGTGCAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19412 R3HDM2::COPZ1 ENSG00000179912.21::ENSG00000111481.10 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57395749:- chr12:57647545-57824826:- chr12:57789532:- COPZ1 ENSG00000111481.10 protein_coding + - chr12:54301202-54351846:+ chr12:54347819:- chr12:54694986-54745630:+ chr12:54741603:- NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site CDS deletion/5'-5' medium none none none 5 8 2 106 6343 ENST00000402412.6 unknown upstream downstream duplicates(1) GCGGCCGTGGGCCCGGGCGGCGGGCGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG___AGGTTAGACTTGTTTCTTATATGTGATGCCATTCCAGCACTGGACTCATGGAGGCTGAGCATTTATTCAG|CCAAGAACAGCCCCTCCATGTTCTCCAGCAGTGCTCGCTTTTCTACATTTTTCCTGAGTCCCCAAGAGAAGAGAAGAGAATAACCAACTTGTATGTGAAAGAAATCCTAGGACCTTGTCTCAATTGAGGAACCTAAACTAGACCAATAAACATCTCCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19418 HNRNPC::ELOVL6 ENSG00000092199.19::ENSG00000170522.10 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HNRNPC ENSG00000092199.19 protein_coding - - chr14:21209136-21269494:- chr14:21230319:- chr14:21677295-21737653:- chr14:21698478:- ELOVL6 ENSG00000170522.10 protein_coding - + chr4:110045846-110199199:- chr4:110099653:+ chr4:110967002-111120355:- chr4:111020809:+ chr14:21225282 chr4:110087868 NA NA chr14:21693441 chr4:111009024 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| RRM_1(100%),RRM_5(100%)| 1 1 2 6406 11 ENST00000556142.5 unknown upstream upstream none GGTCAGTAACAGAACACCCTTCTCCGTCCCCTCTACTCAG___CTCCTCTTTTGACTTGGACTATGACTTTCAACGGGACTATTATGATAG|GTCAAGAACCTCAAAGATGGCTTCTTGGAACTCCTTATGCTGCTGATGAAAAGAAAACACTGCCAGACAGGTAACTGGTAGAGGCTCCTTGAATCAGAAGCACAC...ATGCTCTGTTGCCATATCAAAGTTGGATAACTTAGCCAAATCTAgCTTCTTTGCCACCAGGAGCAATCTCATCTAAAAGTCTTACTGATTCACATAACCAG SVTEHPSPSPLLSSSFDLDYDFQRDYYDr|srtskmaswnslcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19434 PVT1::CPQ ENSG00000249859.14::ENSG00000104324.16 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CPQ ENSG00000104324.16 protein_coding + - chr8:96645242-97149654:+ chr8:96953610:- chr8:97657470-98161882:+ chr8:97965838:- chr8:127834952,chr8:127834953,chr8:127834948,chr8:127834953,chr8:127834952 chr8:97096947,chr8:97096946,chr8:97096946,chr8:97096944,chr8:97096939 NA NA chr8:128847198,chr8:128847199,chr8:128847194,chr8:128847199,chr8:128847198 chr8:98109175,chr8:98109174,chr8:98109174,chr8:98109172,chr8:98109167 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' high none none none 300 274 300 10397 5250 ENST00000667305.1 unknown downstream downstream duplicates(240),mismappers(27),mismatches(99) GGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GACACCTGAGGAAAGAGTTTGGAAAAGAGACAGTGGTCAGAAAAGAACTGACAGGATTTTCCAGTGTCTAGAAATGCACTGCTTGAAGAGCAGCAGAATATATTACACTGGAGAAGAGAAGACTGTAAGGGGCTAGATGCTTCATCTGCAAGAAGAGTAGACTTGCCCTGAAGGAATAATCAGGCCAGTGAGAAAGAGCATATGCACATAGATTTGAGCTCAGTAAAGAATAAACCTGAGCAGTCCCACAAGGGAACAGTACTCCCCAGAGGATAAGCTGCCAAATATGGGCAGTGTTCAAGCAGAGGTGCAAGGAACACCTGCCAGGTAAACAATGGACACCTGCCCTGAGGAGGCCGTGAGATAGATCATCTCCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19435 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1811 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 123 113 300 10397 828 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(129),mismatches(14) GTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19436 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1812 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 13 31 300 1264 828 ENST00000662410.1 ENST00000523825.2 downstream downstream duplicates(68),mismatches(12) GCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19438 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1814 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 13 13 300 451 828 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(66),mismatches(12) TGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19457 EXOC5::CPQ ENSG00000070367.16::ENSG00000104324.16 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXOC5 ENSG00000070367.16 protein_coding - - chr14:57200507-57268905:- chr14:57244165:- chr14:57667225-57735623:- chr14:57710883:- CPQ ENSG00000104324.16 protein_coding + - chr8:96645242-97149654:+ chr8:96953610:- chr8:97657470-98161882:+ chr8:97965838:- chr14:57242386,chr14:57242388 chr8:96973207,chr8:96973206 NA NA chr14:57709104,chr14:57709106 chr8:97985435,chr8:97985434 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Exocyst_complex_component_Sec10(11%)| Sec10(6%)| 38 36 44 1518 5250 ENST00000621441.5 unknown upstream downstream duplicates(25),low_entropy(2),mismatches(5) AAGGAATTTGCCAAGAAGGTACAAGAGCTGCAGAAAAGCAATCAG___GTTGCCTTCCAACATTTCCAAGAACTAGATGAGCACATTAGCTATGTAGCAACTAAAGTCTGTCACCTTGGAGACCAGTTAGAGGGGGTAAACACACCCAGACAACGGGCAGTGGAGGCTCAGAAATTGATGAAATACTTTAATGAGTTTCTAGATGGAGAATTGAAATCTGATGTTTTTACAAATTCTGAAAAG|GACACCTGAGGAAAGAGTTTGGAAAAGAGACAGTGGTCAGAAAAGAACTGACAGGATTTTCCAGTGTCTAGAAATGCACTGCTTGAAGAGCAGCAGAATATATTACACTGGAGAAGAGAAGACTGTAAGGGGCTAGATGCTTCATCTGCAAGAAGAGTAGACTTGCCCTGAAGGAATAATCAGGCCAGTGAGAAAGAGCATATGCACATAGATTTGAGCTCAGTAAAGAATAAACCTGAGCAGTCCCACAAGGGAACAGT KEFAKKVQELQKSNQVAFQHFQELDEHISYVATKVCHLGDQLEGVNTPRQRAVEAQKLMKYFNEFLDGELKSDVFTNSEK|dt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19458 SUPT6H::MYH10 ENSG00000109111.15::ENSG00000133026.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1819 FALSE NA FALSE NA SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28662342:+ chr17:26989216-27029697:+ chr17:26989360:+ MYH10 ENSG00000133026.14 protein_coding - - chr17:8474207-8631376:- chr17:8554018:- chr17:8377525-8534694:- chr17:8457336:- chr17:28671475 chr17:8563788 NA NA chr17:26998493 chr17:8467106 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(76%),Myosin_tail(100%) |IQ(100%),Myosin_head(33%),Myosin_tail_1(100%) 21 70 26 477 630 ENST00000314616.11 ENST00000688902.1 downstream downstream duplicates(22),inconsistently_clipped(4),low_entropy(1),mismatches(2) CGGCGGAGGGGCCGTGCGGTGGGTCCGTACTATCTTTTCCCAGTCTCGGTTCGACGACTCCATTTTCCTCGGTGGGGGCTTAGCGCACTGGAGGAGCGGCGGGCTTCAGACAG|GGCAAATTTATTCGGATCAACTTTGATGTAACTGGCTATATCGTTGGGGCCAACATTGAAACAT___ACCTTCTGGAAAAGTCTCGTGCTGTTCGTCAAGCAAAAGATGAACGTACTTTTCATATCTTTTACCAGTTGTTATCTGGAGCAGGAGAACACCTAAAGT___CTGATTTGCTTCTTGAAGGATTTAATAACTACAGGTTTCTCTCCAATGGCTATATTCCTATTCCGGGACAGCAAGACAAAGATAATTTCCAGGAGACCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19459 MYH10::SUPT6H ENSG00000133026.14::ENSG00000109111.15 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYH10 ENSG00000133026.14 protein_coding - - chr17:8474207-8631376:- chr17:8569720:- chr17:8377525-8534694:- chr17:8473038:- SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28673371:+ chr17:26989216-27029697:+ chr17:27000389:+ chr17:8563785,chr17:8563788 chr17:28671475,chr17:28671472 NA NA chr17:8467103,chr17:8467106 chr17:26998493,chr17:26998490 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(23%)|Acidic_N-terminal_SPT6(100%),HHH_domain(100%),Helix-hairpin-helix_motif_______________________(100%),Helix-turn-helix_DNA-binding_domain_of_SPT6(100%),Holliday-junction_resolvase-like_of_SPT6_(100%),S1_RNA_binding_domain(100%),SH2_domain(100%) Myosin_N(100%),Myosin_head(51%)|HHH_3(100%),HHH_7(100%),HHH_9(100%),HTH_44(100%),S1(100%),SH2(100%),SH2_2(100%),SPT6_acidic(100%),YqgF(100%) 1 0 5 492 480 ENST00000269243.8 ENST00000314616.11 upstream upstream none GGGTGAGTCAGGTGCTGGGAAGACAGAAAATACAAAGAAAGTTATTCAGTACCTTGCCCATGTTGCTTCTTCACATAAAGGAAGAAAGGACCATAATATTCCT___GGGGAACTTGAACGGCAGCTTTTGCAAGCAAATCCAATTCTGGAATCATTTGGAAATGCGAAGACTGTGAAAAATGATAACTCATCTCGTTTT|TTgTCTTCAGGCAGAGTGAGAAGCTGCAGCAATGTCTGATTTTGTGGAAAGCGAGGCTGAGGAGTCAGAGGAAGAATACAATGATGAAGGCGAGGTGGTACCCCGAGTCACCAAGAAATTTGTGGAAGAGGAGGATGATG GESGAGKTENTKKVIQYLAHVASSHKGRKDHNIPGELERQLLQANPILESFGNAKTVKNDNSSRF|lssgrvrscsnv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19467 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127311689:- chr8:127568568-128431295:+ chr8:128323934:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense antisense unknown exon/splice-site exon inversion/3'-3' high none none none 3 2 76 1264 105 ENST00000662410.1 unknown downstream downstream duplicates(16),mismappers(4),mismatches(3) TGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|TGAGATGAACCCGGTACCTCCGATGGAAATGCAGAAATCACCCATTTTCCGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTTGGCCATCTTGGCTCCTCCCCGGCATTTTTCTTACTTTTTATTTAGGACCAGTTTGTTGTCTTGCGACCTCAGTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19468 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1820 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73268510:+ chr14:73704205-73741348:+ chr14:73735218:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense unknown 5'UTR/splice-site exon deletion/read-through high none |Immunoglobulin_I-set_domain(21%),PLAC_(protease_and_lacunin)_domain(100%) |I-set(4%),Ig_2(7%),Ig_3(2%),PLAC(100%),ig(3%) 7 18 55 603 73 ENST00000261973.12 ENST00000554527.1 downstream upstream duplicates(25),mismatches(8) GCCGCGCAGCGCGGCTGTATTTGCGGCCTGTGCGAGTAGGCGCTTGGGCACTCAGTCTCCCTGGCGAGCGACGGGCAGAAATCTCGAACCAGTGGAGCGCACTCGTAACCTGGATCCCAGAAGGTCGCGAAGGCAGTACCGTTTCCTCAGCGGCGG|ACCTCCAGAGGCCCTTGATGGCTCTCCCAGTGTCCTCTCTCCTCCAGGAACGGGCTACCTGTGCAGGCTGATGGCCACCGTGTCCACCAGTCCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAGTGCCTACCAGGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAG___CACCCACCGCCCAGCCCAGGGACCCTGGCAGGGACTGCGTCGACCAGCCAGAGCTGGCCAACTGTGATTTGATCCTGCAGGCCCAGCTTTGTGGCAATGAGTATTACTCCAGCTTCTGCTGTGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19469 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1821 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73272495:+ chr14:73704205-73741348:+ chr14:73739203:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |PLAC_(protease_and_lacunin)_domain(100%) |PLAC(100%) 15 20 39 603 167 ENST00000261973.12 ENST00000340738.9 downstream upstream duplicates(20),low_entropy(3),mismatches(8) TCGCCGCGCAGCGCGGCTGTATTTGCGGCCTGTGCGAGTAGGCGCTTGGGCACTCAGTCTCCCTGGCGAGCGACGGGCAGAAATCTCGAACCAGTGGAGCGCACTCGTAACCTGGATCCCAGAAGGTCGCGAAGGCAGTACCGTTTCCTCAGCGGCGG|CACCCACCGCCCAGCCCAGGGACCCTGGCAGGGACTGCGTCGACCAGCCAGAGCTGGCCAACTGTGATTTGATCCTGCAGGCCCAGCTTTGTGGCAATGAGTATTACTCCAGCTTCTGCTGTGCCAGCTGTTCACGTTTCCAGCCTCACGCTCAGCCCATCTGGCAGTAGGGATGAAGGCTAGTTCCAGCCCCAGTCCAAAATAGTTCATAGGGCTAGGGAGAAAGGAAGATGGACTCTTGGCTTCCTCTCTCTGGCTGGCAAAGGGAGTTATCTTCTGGAATACATTAGCTCTTTCAAAAACCCACCCAGTGTTTAGCCTCAACGGCAGCCAGTTACCAGCTTCTCTCTGTAGCCTTCAGCAGTGTTTGCATCTCTGACATAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19470 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1822 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73268557:+ chr14:73704205-73741348:+ chr14:73735265:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |Immunoglobulin_I-set_domain(21%),PLAC_(protease_and_lacunin)_domain(100%) |I-set(3%),Ig_2(5%),Ig_3(1%),PLAC(100%),ig(2%) 3 6 51 603 108 ENST00000261973.12 ENST00000340738.9 downstream upstream duplicates(17),mismatches(6) TCGCCGCGCAGCGCGGCTGTATTTGCGGCCTGTGCGAGTAGGCGCTTGGGCACTCAGTCTCCCTGGCGAGCGACGGGCAGAAATCTCGAACCAGTGGAGCGCACTCGTAACCTGGATCCCAGAAGGTCGCGAAGGCAGTACCGTTTCCTCAGCGGCGG|GAACGGGCTACCTGTGCAGGCTGATGGCCACCGTGTCCACCAGTCCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAGTGCCTACCAGGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAG___CACCCACCGCCCAGCCCAGGGACCCTGGCAGGGACTGCGTCGACC...CCAGCCTCgCGCTCAGCCCATCTGGCAGTAGGGATGAAGGCTAGTTCCAGCCCCAGTCCAAAATAGTTCATAcGGCTAGGtAGAAAGGAA...AGGGATAGAGTCTAcGTTGCACAGTCTGGTCACAAACTCCTGGCCTCAAGTGATGTTTCCTCCTCAGCCTCCTAAAGTATTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19471 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058811:+ chr14:73525240-73590607:+ chr14:73525519:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73268557:+ chr14:73704205-73741348:+ chr14:73735265:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Immunoglobulin_I-set_domain(21%),PLAC_(protease_and_lacunin)_domain(100%) |I-set(3%),Ig_2(5%),Ig_3(1%),PLAC(100%),ig(2%) 1 0 51 5 108 ENST00000261973.12 ENST00000340738.9 downstream upstream duplicates(17),mismatches(6) TCGCCGCGCAGCGCGGCTGTATTTGCGGCCTGTGCGAGTAGGCGCTTGGGCACTCAGTCTCCCTGGCGAGCGACGGGCAGAAATCTCGAACCAGTGGAGCGCACTCGTAACCTGGATCCCAGAAGGTCGCGAAGGCAGTACCGTTTCCTCAGCGGCGGGTGAGT...GAGACCGGGTGCCTCAGCTGGTGaAGGAGGAAAAGCCGGGGTGGCTGCGAAAGCGCCAGGGTGGGGTAGAG|GAACGGGCTACCTGTGCAGGCTGATGGCCA...CCACCAGTCCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAGTGCCTACCAGGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAG___CACCCACCGCCCAGCCCAGGGACCCTGGCAGGGACTGCGTCGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19472 LTBP2::CASC8 ENSG00000119681.12::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LTBP2 ENSG00000119681.12 protein_coding - - chr14:74498183-74612378:- chr14:74603635:- chr14:74964886-75079081:- chr14:75070338:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 12 31 23 50 828 ENST00000261978.9 ENST00000523825.2 upstream downstream duplicates(10),mismatches(3) CCCGGACCCGGGCCGCGCCGGCTCTCCCACGCCTGGGGACCCCACAGCGGTCTGGGGCTGCGCCCCCAACCCCGCCGCGAGGGCGGCTCACGGG___GAGGAACGTCTGCGGGGGACAGTGCTGCCCAGGATGGACAACAGCAAACAGCACCAACCACTGTATCAAAC|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGGGTGGCTGTTATGTAGCAGTAGATAATTGGAACA RTRAAPALPRLGTPQRSGAAPPTPPRGRLTGRNVCGGQCCPGWTTANSTNHCIK|rckkaqvaygedarlpadalsqaq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19473 SLC22A17::CASC11 ENSG00000092096.19::ENSG00000249375.8 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1823 TRUE 3358 TRUE 1268 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23346756:- chr14:23815523-23822121:- chr14:23815965:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127730922:- chr8:128698588-128751233:- chr8:128743168:- NA NA NA NA NA NA NA NA sense sense unknown CDS exon/splice-site translocation high none Sugar_(and_other)_transporter(100%)| MFS_1(100%),Sugar_tr(100%)| 22 10 23 376 172 ENST00000397267.6 ENST00000672942.1 upstream downstream duplicates(7),mismatches(2) CTGAACGAGGCTGCCATCACCACTTTCTCTGTCCTTGGGCTCTTCTCCTCCCAAGCTGCCGCCATCCTCAGCACCCTCCTTGCTGCTGAGGTCATCCCCACCACTGTCCG___GGGCCGTGGCCTGGGCCTGATCATGGCTCTAGGGGCGCTTGGAGGACTGAGCGGCCCGGCCCAGCGCCTCCACATGGGCCATGGAGCCTTCCTGCAGCACGTGGTGCTGGCGGCCTGCGCCCTCCTCTGCATTCTCAGCATTATGCTGCTGCCGGAGACCAAGCGCAAGCTCCTGCCCGAG|AGACACAAAAGGGAAGAaTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCCCCGACCCCAACACCTTCTgTGAACATCTCTTTCTCCACCTCTCAAAAAATTTCCTACTGAGTTGGTCCTCTAGTGAAAAGAGCAGTTAATAAGATGGAAAGCAACTGGACGTGGTGAAGAAAAAGCCAGCGAACTTAGGGGTGAGACTGAAGCCCCTCAGGGTGGCTGAGCTGCTATTTGAAAAATTCCTTCAAGTCACGTGCGGCCTGTCAAGAGATGAGGTGAAGGAAGAGAATGATAAATATCTATCTCCAGTGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19474 SLC22A17::CASC11 ENSG00000092096.19::ENSG00000249375.8 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1824 TRUE 3358 TRUE 1268 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23347101:- chr14:23815523-23822121:- chr14:23816310:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127730922:- chr8:128698588-128751233:- chr8:128743168:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site translocation high none Sugar_(and_other)_transporter(84%)| MFS_1(63%),Sugar_tr(93%)| 2 6 10 493 172 ENST00000354772.10 ENST00000672942.1 upstream downstream duplicates(1) AGGAGGCCCAGGAGGCCCTGCAGG___...CCGGCATTGCTTCCCTGGTCCTGCTGGGCCTGTGGGATT___ATCTGAACGAGGCTGCCATCACCACTTTCTCTGTCCTTGGGCTCTTCTCCTCCCAAGCTGCCGCCATCCTCAGCACCCTCCTTGCTGCTGAGGTCATCCCCACCACTGTCCG|AGACACAAAAGGGAAGAaTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCCCCGACCCCAACACCTTCTgTGAACATCTCTTTCTCCACCTCTCAAAAAATTTCCTACTGAGTTGGTCCTCTAGTGAAAAGAGCAGTTAATAAGATGGAAAGCAACTGGACGTGGTGAAGAAAAAGCCAGCGAACTTAGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19475 TPD52L1::PARVA ENSG00000111907.21::ENSG00000197702.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1825 FALSE NA FALSE NA TPD52L1 ENSG00000111907.21 protein_coding + + chr6:125119049-125264407:+ chr6:125153970:+ chr6:125440195-125585553:+ chr6:125475116:+ PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12496458:+ chr11:12399110-12556903:+ chr11:12518005:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Calponin_homology_(CH)_domain(82%) |CH(36%) 3 18 30 771 146 ENST00000368388.6 ENST00000334956.15 downstream upstream duplicates(10),mismatches(4) GCCTGCGTCCCCAACCCCCTCCGCGCAGCGCTCGCGACACGCGTGCCAGGAGTGGGAGCGAGCGGCGGGGCCAGCTGCGTTCTGAGCCTGGGCGCAGCTGCCATCTGCTCTGGGAAGCACCAGGGTGTCCCCGCCGCCCTCAGCTCGAAGTCAGCCACCATGGAGGCGCAGGCACAAG|AGAAACTGGAGAGTGAGAAGCTAAATGTGGCTGAGGTCACCCAGTCAGAGATTGCTCAGAAGCAAAAACTGCAGACTGTCCTGGAGAAGATCAATGAAACCCTGAAACTTCCTCCCAGGAGCATCAAGTGGAATGTGGATT___CTGTTCATGCCAAGAGCCTGGTGGCCATCTTACACCTGCTCGTTGCTCTGTCTCAGTATTTCCGCGCACCAATTCGACTCCCAGACCATGTTTCCATCCAAGTGGTTGTGGTCCAG___AAACGAGAAGGAAT MEAQAQ|eKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19477 DACH2::HDAC8 ENSG00000126733.22::ENSG00000147099.21 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DACH2 ENSG00000126733.22 protein_coding + + chrX:86148451-86832604:+ chrX:86149108:+ chrX:85403455-86087607:+ chrX:85404112:+ HDAC8 ENSG00000147099.21 protein_coding - - chrX:72329516-72573101:- chrX:72351838:- chrX:71549366-71792951:- chrX:71571688:- chrX:86220454 chrX:72459171 NA NA chrX:85475457 chrX:71679021 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none SKI/SNO/DAC_family(100%)| Ski_Sno(100%)| 14 11 17 212 137 ENST00000373125.9 ENST00000373589.9 downstream downstream duplicates(17),mismatches(3) GCCGGAGGCGGCGGCAGGGGCAACACCAACACCAACGAGTGCCGCATGGTCGACATGCACGGGATGAAGGTGGCTTCGTTCCTGATGGACGGCCAGGAACTGATCTGCCTGCCGCAAGTCTTTGATCTTTTTCTCAAGCACCTGGTGGGAGGCTTGCACACTGTGTACACCAAGCTGAAGAGACTGGATATATCCCCCGTGGTGTGTACTGTTGAGCAGGTCCGGATCCTCCGCGGGCTGGGGGCCATCCAGCCCGGGGTAAACCGCTGCAAACTCATCACCAGGAAAGACTTCGAAACTTTGTTCACCGATTGCACCAATGCCAG|TTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAAG___GGAATCTGAAGCATGTGGTCTAGTTGACAGAAAGAGATCAGGTTTCCAGAGCTGAGGAGTGGTGCCTATAATGAAGACAGCGTGTTTA AGGGGRGNTNTNECRMVDMHGMKVASFLMDGQELICLPQVFDLFLKHLVGGLHTVYTKLKRLDISPVVCTVEQVRILRGLGAIQPGVNRCKLITRKDFETLFTDCTNAs|fsqhmvlimcwksrqaagqtamsptesnkssttskgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19478 HDAC8::DACH2 ENSG00000147099.21::ENSG00000126733.22 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HDAC8 ENSG00000147099.21 protein_coding - - chrX:72329516-72573101:- chrX:72462004:- chrX:71549366-71792951:- chrX:71681854:- DACH2 ENSG00000126733.22 protein_coding + + chrX:86148451-86832604:+ chrX:86223900:+ chrX:85403455-86087607:+ chrX:85478903:+ chrX:72459159 chrX:86220464 NA NA chrX:71679009 chrX:85475467 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Histone_deacetylase_domain(100%)| Hist_deacetyl(100%)| 7 3 2 131 21 ENST00000373589.9 unknown upstream upstream mismatches(1) GACGCATTCAGTTTCACCTCCAAAGTCATGACCGTGTCCCTGCACAAATTCTCCCCAGGATTTTTCCCAG___GAACAGGTGACGTGTCTGATGTTGGCCTAGG...GTGAAAG___TGTACTAAAGGAAGTATACCAAGCCTTTAATCCCAAAGCAGTGGTCTTACAGCTGGGAGCTGACACAATAGCTGGGGATCCCATGTGCTCCTTTAACATGACTCCAGTGGGA...GTCTTAAGTACATCCTTCAATGGCAGTTGGCAACACTCATTTTGGGAGGAG___GAGGCTATAACCTTGCCAACACGGCTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGAAAACACTATCCTCTGAGATCCCAGATCATGAG|GTGCTGACCATCTCTTGAGAAGTAGAAACTTGGTGTATAGCTTGTATGTCTTAGTGACATGGAAAGGTGATTCTTCATTTATCAAAGAGGGTTCTCTTTGAAATTCTAGTTTCATAACTTTCTCCATCAGTCTCTTCTCCATTTTTTGAATGTCATTTCTGTTTTGCCTCTGGGGCTATTGATCTGGTCTTTGC LKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE|vltis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19481 DACH2::ENSG00000285547 ENSG00000126733.22::ENSG00000285547.1 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DACH2 ENSG00000126733.22 protein_coding + + chrX:86148451-86832604:+ chrX:86149108:+ chrX:85403455-86087607:+ chrX:85404112:+ ENSG00000285547 ENSG00000285547.1 protein_coding - - chrX:72301691-72572843:- chrX:72351838:- chrX:71521541-71792693:- chrX:71571688:- chrX:86220454 chrX:72459171 NA NA chrX:85475457 chrX:71679021 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none SKI/SNO/DAC_family(100%)| Ski_Sno(100%)|CITED(100%) 14 8 12 212 137 ENST00000373125.9 ENST00000648922.1 downstream downstream duplicates(15),mismatches(2) GCCGGAGGCGGCGGCAGGGGCAACACCAACACCAACGAGTGCCGCATGGTCGACATGCACGGGATGAAGGTGGCTTCGTTCCTGATGGACGGCCAGGAACTGATCTGCCTGCCGCAAGTCTTTGATCTTTTTCTCAAGCACCTGGTGGGAGGCTTGCACACTGTGTACACCAAGCTGAAGAGACTGGATATATCCCCCGTGGTGTGTACTGTTGAGCAGGTCCGGATCCTCCGCGGGCTGGGGGCCATCCAGCCCGGGGTAAACCGCTGCAAACTCATCACCAGGAAAGACTTCGAAACTTTGTTCACCGATTGCACCAATGCCAG|TTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAAG___GGAATCTGAAGCATGTGGTCTAGTTGACAGAAAGAGATCAGGTTTCCAGAGCTGAGGAGTGGTGCCTATAATGAAGACAGCG AGGGGRGNTNTNECRMVDMHGMKVASFLMDGQELICLPQVFDLFLKHLVGGLHTVYTKLKRLDISPVVCTVEQVRILRGLGAIQPGVNRCKLITRKDFETLFTDCTNAs|fsqhmvlimcwksrqaagqtamsptesnkssttskgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19482 ENSG00000285547::DACH2 ENSG00000285547.1::ENSG00000126733.22 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285547 ENSG00000285547.1 protein_coding - - chrX:72301691-72572843:- chrX:72462004:- chrX:71521541-71792693:- chrX:71681854:- DACH2 ENSG00000126733.22 protein_coding + + chrX:86148451-86832604:+ chrX:86223900:+ chrX:85403455-86087607:+ chrX:85478903:+ chrX:72459159 chrX:86220464 NA NA chrX:71679009 chrX:85475467 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none none Hist_deacetyl(100%)| 6 3 2 131 21 ENST00000648922.1 unknown upstream upstream mismatches(1) GACGCATTCAGTTTCACCTCCAAAGTCATGACCGTGTCCCTGCACAAATTCTCCCCAGGATTTTTCCCAG___GAACAGGTGACGTGTCTGATGTTGGCCTAGG...GTGAAAG___TGTACTAAAGGAAGTATACCAAGCCTTTAATCCCAAAGCAGTGGTCTTACAGCTGGGAGCTGACACAATAGCTGGGGATCCCATGTGCTCCTTTAACATGACTCCAGTGGGA...CTCGATGCTGGACATACTTGACCGGGGTCATCCTAGGGAAAACACTATCCTCTGAGATCCCAGATCATGAG|GTGCTGACCATCTCTTGAGAAGTAGAAACTTGGTGTATAGCTTGTATGTCTTAGTGACATGGAAAGGTGATTCTTCATTTATCAAAGAGGGTTCTCTTTGAAATTCTAGTTTCATAACTTTCTCCATCAGTCTCTTCTCCATTTTTTGAATGTCATTTCTGTTTTGCCTCTGGGGCTATTGATCTGGTCTTTGC RCWTYLTGVILGKTLSSEIPDHE|vltis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19483 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57864787:- chr14:58030638-58448912:- chr14:58331505:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr14:57854575,chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582 chr8:127299070,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063 NA NA chr14:58321293,chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300 chr8:128311315,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308 NA NA sense sense unknown intron exon/splice-site translocation high none none none 7 9 18 34 243 unknown ENST00000644021.1 upstream upstream duplicates(4),mismappers(2),mismatches(2) CTTTCACGTTTTTGGACCAGTTTTGGTGGGAGGGCGATGAGGTGTGCTCTGCTCGCAGTCCCCCTCCCCCAGTACACAAACCCACTAGCTATATTTGCTGGGATTAGTTCTACTGGCGACTGAAGTGCAGCTCATTTTTCTTCGAATTGGAGGAGTAGCTGCGGTTTAGTTTCTATGCAG|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACCAAAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19484 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57865723:- chr14:58030638-58448912:- chr14:58332441:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr14:57854575,chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582 chr8:127299070,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063 NA NA chr14:58321293,chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300 chr8:128311315,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 4 7 8 41 240 ENST00000556826.6 ENST00000646670.1 upstream upstream duplicates(7),mismatches(1) GCAGGAGCTGCAAGATCAGCACCAGCGGCTCCGGCACCTGCACCAGCTCCCGGGCCCCGCGCTGCGCTCTCCGCCCCGCCGCACTCGGGGCCGTCGCCCCGCGCTCTCTATGGATGTCAAGGCGGCCCCCAACGGGGTGGCCACTATCGAGGACCGGATCCTGCGGATCACCGGCTACTATGGCTATTATCCAGGTTACTCCAGCCAGAAAA|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG MDVKAAPNGVATIEDRILRITGYYGYYPGYSSQK|kvli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19485 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57865723:- chr14:58030638-58448912:- chr14:58332441:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr14:57854575,chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582 chr8:127299070,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063 NA NA chr14:58321293,chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300 chr8:128311315,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 2 9 41 243 ENST00000556826.6 ENST00000644021.1 upstream upstream duplicates(3),mismappers(1),mismatches(1) GCAGGAGCTGCAAGATCAGCACCAGCGGCTCCGGCACCTGCACCAGCTCCCGGGCCCCGCGCTGCGCTCTCCGCCCCGCCGCACTCGGGGCCGTCGCCCCGCGCTCTCTATGGATGTCAAGGCGGCCCCCAACGGGGTGGCCACTATCGAGGACCGGATCCTGCGGATCACCGGCTACTATGGCTATTATCCAGGTTACTCCAGCCAGAAAA|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCC...ATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTC MDVKAAPNGVATIEDRILRITGYYGYYPGYSSQK|kshlvaqtgvqwydldslkpllpgfkhfsclsllss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19486 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57981913:- chr14:58030638-58448912:- chr14:58448631:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582,chr14:57854575 chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063,chr8:127299070 NA NA chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300,chr14:58321293 chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308,chr8:128311315 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 1 0 181 243 ENST00000556568.1 ENST00000646670.1 upstream upstream none GCAATTGGAGACCTTGAAAAACTTTT|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCA...TTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19487 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57981913:- chr14:58030638-58448912:- chr14:58448631:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582,chr14:57854575 chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063,chr8:127299070 NA NA chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300,chr14:58321293 chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308,chr8:128311315 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 1 0 181 240 ENST00000556568.1 ENST00000646670.1 upstream upstream none GTTGCAAAAAACCTGGCAATTGGAGACCTTGAAAAACTTTT|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19507 USP14::ENSG00000263551 ENSG00000101557.15::ENSG00000263551.6 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP14 ENSG00000101557.15 protein_coding + + chr18:158383-214629:+ chr18:204692:+ chr18:158383-214629:+ chr18:204692:+ ENSG00000263551 ENSG00000263551.6 lncRNA + + chr18:976589-1310018:+ chr18:1133843:+ chr18:976590-1310019:+ chr18:1133844:+ chr18:208823 chr18:1072829 NA NA chr18:208823 chr18:1072830 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Ubiquitin_carboxyl-terminal_hydrolase(75%)| UCH(78%),UCH_1(79%)| 2 4 2 642 9 ENST00000261601.8 ENST00000580781.5 downstream upstream duplicates(1),mismappers(1) AAGAAATCACCAAACAGTCTCCAACGTTGCAAAGAAATGCCTTGTATATCAAATCT___TCCAAGATCAGCCGGCTGCCTGCTTACTTGACCATTCAGATGGTTCGATTTT...CAGAACTTCAAGAGAAAATGGTGTCTTTTCGATCCAAATTCAAGGATCTAGAAGATAAAAAAGTGAATCAGCAGCCAAATACA|GGTCTGGAAATAACTGGGAAAGAAAAGCCTTGTGGAAAGAAGACATCTCCAG___GGAAAACATGCTGCTTCTTCAAAGACTCCAATTTCAGATGGCAAAATGCATGGAAGCTGAGATGGACCTTCTGGAGTTTTCGATAAACCACTGTAGCTCAGTCAGAGGTCCAATTATGATGATACCCACACAGCCCGGTCCTCCCACAGCCTACATCCAATCCTCTGAGGAAGCTGAGTGGCACTGCCTTTATTCACCACAGATGCTACAGAATCAGCAG___GAAtGAAGACTGTGAAAAGGAAAAATGCACTCTTTTAAG___GTGCATGGTGCAAGCTGTCA ELQEKMVSFRSKFKDLEDKKVNQQPNT|gleitgkekpcgkktspgktccffkdsnfrwqnawklrwtfwsfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19510 BPHL::CPAMD8 ENSG00000137274.13::ENSG00000160111.15 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BPHL ENSG00000137274.13 protein_coding + + chr6:3118374-3153578:+ chr6:3123760:+ chr6:3118608-3153812:+ chr6:3123994:+ CPAMD8 ENSG00000160111.15 protein_coding - + chr19:16892951-17026815:- chr19:17017239:+ chr19:17003762-17137625:- chr19:17128049:+ chr6:3124523 chr19:17015795 NA NA chr6:3124757 chr19:17126605 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none alpha/beta_hydrolase_fold(7%)| Abhydrolase_1(0%),Abhydrolase_6(0%),Hydrolase_4(0%)| 0 1 5 67 3 ENST00000380379.10 unknown downstream upstream duplicates(2) CACGGGCCGGACCCGCGGCCGCGTTCGG___CACCTCGGTAACCTCTGCCAAAGTGGCTGTGAATGGCGTTCAGCTGCATTACCAGCAGACTGGAGAGGGAGATCACGCAGTCCTGCTACTTCCTGGGATGTTAG|GTGGGACCATCTAGTTGAAGGAAAACAAGCTCAGGGCTTGCACTGTTTCTTCAGTTATG___GGCCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCATAGTTCACTGCAGCCTCAACC...AACAGGCGTGAACCACCATGCCTAGCTAATGGATAATTTTTGTA--TTTTTTTTTTGTAGAGACAGGATTTTACCATGTTTTCCAGGCTGGCCTTGAATTCCT RAGPAAAFGTSVTSAKVAVNGVQLHYQQTGEGDHAVLLLPGML|ggti* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19511 CDKAL1::ENSG00000286590 ENSG00000145996.11::ENSG00000286590.1 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20649377:+ chr6:20534688-21232635:+ chr6:20649608:+ ENSG00000286590 ENSG00000286590.1 lncRNA + + chr6:20321461-20333193:+ chr6:20331706:+ chr6:20321692-20333424:+ chr6:20331937:+ chr6:20667807,chr6:20667806 chr6:20329588,chr6:20329584 NA NA chr6:20668038,chr6:20668037 chr6:20329819,chr6:20329815 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Uncharacterized_protein_family_UPF0004(73%)| UPF0004(52%)| 1 2 3 193 5 ENST00000274695.8 ENST00000662918.1 downstream upstream duplicates(1) CAGTCCACCAAGTGACAG___CACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAG___AAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAA|AATGGAAGGCCAAGGAGATGAAATGGAAGACTTTGGACAGAACTTCTGGGAAAGCTCTTTAAAGCAGTCTACTAGACTGGCAAGCAGACATTCATTCTCCTCTTCTGACTTAGACATGGTATTTTTAGCTCCAGCAGCCGTCCTGTGAAGATGGGAGCACACGCTAAGGGCAGCAGAAAAGAAAGCCAGAAGGAGGTTGGATATTGATAACCACCGTGGTGCCATCTTACCAGCCCTCGGC...___AATACTTGCTTCTGGAATCCAGCGGCCATGTTGTGAGGAAG SPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIk|megqgdemedfgqnfwesslkqstrlasrhsfsssdldmvflapaavl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19513 TSEN34::ZFP14 ENSG00000170892.13::ENSG00000142065.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3364 TRUE 1270 TSEN34 ENSG00000170892.13 protein_coding + + chr19:54189938-54194536:+ chr19:54190450:+ chr19:54693789-54698394:+ chr19:54694301:+ ZFP14 ENSG00000142065.14 protein_coding - - chr19:36334453-36379201:- chr19:36360533:- chr19:36825355-36870103:- chr19:36851435:- chr19:54191043,chr19:54191043,chr19:54191044 chr19:36361168,chr19:36361162,chr19:36361168 NA NA chr19:54694894,chr19:54694894,chr19:54694895 chr19:36852070,chr19:36852064,chr19:36852070 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 1 3 1 74 91 ENST00000302937.8 ENST00000270001.12 downstream downstream mismatches(1) CCACCTCGACTGCGAATTACTGTTTATGAGGTGACTCGCTGGTTCTATCGGTGGACAGTGGGACATTCTGAAGGGAGGCAAGGAGGCGGACTGAGCGCTCCCAATTGGG|GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGCCCTG___ATTTGGAGTCCAGATACAGGACCAATACTTTATCTCCAGAAAAGGACATTTATGAAATATATTCATTTCAGTGGGATATAATGGAAAGA...GACAGCCAGCTTGTAGGGGGGAGTGCCACCTGAAAAAAAAATTTCCAGGTCCCCAAAGGGTGACCGTCTTCCGGAGGACAGCGGATCGACTACCATGTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19514 TSEN34::ZFP14 ENSG00000170892.13::ENSG00000142065.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3364 TRUE 1270 TSEN34 ENSG00000170892.13 protein_coding + + chr19:54189938-54194536:+ chr19:54190450:+ chr19:54693789-54698394:+ chr19:54694301:+ ZFP14 ENSG00000142065.14 protein_coding - - chr19:36334453-36379201:- chr19:36360536:- chr19:36825355-36870103:- chr19:36851438:- chr19:54191043,chr19:54191043,chr19:54191044 chr19:36361168,chr19:36361162,chr19:36361168 NA NA chr19:54694894,chr19:54694894,chr19:54694895 chr19:36852070,chr19:36852064,chr19:36852070 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 1 74 91 ENST00000302937.8 ENST00000270001.12 downstream downstream duplicates(1) GCGAATTACTGTTTATGAGGgGACTCGCTGGTTCTATCGGTGGACcGTGGGACATTCTGAAGGGAGGCAAGGAGGCGGACTGAGCGCTCCCAATTGGG|CAGGACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGG...GATACTGCCCTG___ATTTGGAGTCCAGATACAGGACCAATACTTTATCTCCAGAAAAGGACATTTATGAAATATATTCATTTCAGTGGGATATAATGGAAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19515 TSEN34::ZFP14 ENSG00000170892.13::ENSG00000142065.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3364 TRUE 1270 TSEN34 ENSG00000170892.13 protein_coding + + chr19:54189938-54194536:+ chr19:54190162:+ chr19:54693789-54698394:+ chr19:54694013:+ ZFP14 ENSG00000142065.14 protein_coding - - chr19:36334453-36379201:- chr19:36360533:- chr19:36825355-36870103:- chr19:36851435:- chr19:54191043,chr19:54191043,chr19:54191044 chr19:36361168,chr19:36361162,chr19:36361168 NA NA chr19:54694894,chr19:54694894,chr19:54694895 chr19:36852070,chr19:36852064,chr19:36852070 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 0 4 91 ENST00000455798.6 ENST00000270001.12 downstream downstream none ACGATCCTCAAGTTCCCAAGTAGAGGAGAGGAAGCGGCAGAGGGAG|GACCTTCCATTTCTAAACCAGATGTGATTACCTTATTGGATGAAGAAAGGAAGGAACCTGGGATGGTTGTGAGGGAAGGGACAAGAAGATACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19516 TSEN34::ZFP14 ENSG00000170892.13::ENSG00000142065.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3364 TRUE 1270 TSEN34 ENSG00000170892.13 protein_coding + + chr19:54189938-54194536:+ chr19:54190371:+ chr19:54693789-54698394:+ chr19:54694222:+ ZFP14 ENSG00000142065.14 protein_coding - - chr19:36334453-36379201:- chr19:36360533:- chr19:36825355-36870103:- chr19:36851435:- chr19:54191043,chr19:54191043,chr19:54191044 chr19:36361168,chr19:36361162,chr19:36361168 NA NA chr19:54694894,chr19:54694894,chr19:54694895 chr19:36852070,chr19:36852064,chr19:36852070 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |C2H2-type_zinc_finger(100%),KRAB_box(1%),Zinc_finger__C2H2_type(100%) |KRAB(0%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%) 0 1 0 63 91 ENST00000429671.7 ENST00000270001.12 downstream downstream none GAGGGGGTGGAGCAAGGAGCGCGTGGCGCGGTGCGCAGTGGGTGGCTCCACCTCGACTGCGAATTACTGTTTATGAG|GACCTTCCATTTCTAAACCAGATG...AGCAGtCATTGAGAAATCACTACTGCAG___ATTTGGAGTCCAGATACAGGACCAATACTTTATCTCCAGAAAAGGACATTTATGAAATATATTCATTTCAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19520 POU5F1B::PCAT1 ENSG00000212993.6::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3365 TRUE 1271 POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127339435:+ chr8:128334428-128432311:+ chr8:128351680:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr8:127375606,chr8:127375613,chr8:127375614,chr8:127375615,chr8:127375616,chr8:127375617,chr8:127375618,chr8:127375619,chr8:127375620,chr8:127375621,chr8:127375622,chr8:127375624,chr8:127375625,chr8:127375626,chr8:127375627,chr8:127375628,chr8:127375629,chr8:127375630,chr8:127375631,chr8:127375632,chr8:127375633,chr8:127375634,chr8:127375635,chr8:127375636,chr8:127375637,chr8:127375638,chr8:127375639,chr8:127375640,chr8:127375641,chr8:127375642,chr8:127375643,chr8:127375644,chr8:127375645,chr8:127375646,chr8:127375647,chr8:127375648,chr8:127375649,chr8:127375651,chr8:127375652,chr8:127375653,chr8:127375654,chr8:127375655,chr8:127375656,chr8:127375657,chr8:127375658,chr8:127375661,chr8:127375662,chr8:127375663,chr8:127375665,chr8:127375652,chr8:127375639,chr8:127375663 chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291884,chr8:127291884,chr8:127291884 NA NA chr8:128387852,chr8:128387859,chr8:128387860,chr8:128387861,chr8:128387862,chr8:128387863,chr8:128387864,chr8:128387865,chr8:128387866,chr8:128387867,chr8:128387868,chr8:128387870,chr8:128387871,chr8:128387872,chr8:128387873,chr8:128387874,chr8:128387875,chr8:128387876,chr8:128387877,chr8:128387878,chr8:128387879,chr8:128387880,chr8:128387881,chr8:128387882,chr8:128387883,chr8:128387884,chr8:128387885,chr8:128387886,chr8:128387887,chr8:128387888,chr8:128387889,chr8:128387890,chr8:128387891,chr8:128387892,chr8:128387893,chr8:128387894,chr8:128387895,chr8:128387897,chr8:128387898,chr8:128387899,chr8:128387900,chr8:128387901,chr8:128387902,chr8:128387903,chr8:128387904,chr8:128387907,chr8:128387908,chr8:128387909,chr8:128387911,chr8:128387898,chr8:128387885,chr8:128387909 chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304129,chr8:128304129,chr8:128304129 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 9 2 181 243 ENST00000645438.1 ENST00000644021.1 downstream upstream same_gene(2) TGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19521 POU5F1B::PCAT1 ENSG00000212993.6::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3365 TRUE 1271 POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127339435:+ chr8:128334428-128432311:+ chr8:128351680:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr8:127375606,chr8:127375613,chr8:127375614,chr8:127375615,chr8:127375616,chr8:127375617,chr8:127375618,chr8:127375619,chr8:127375620,chr8:127375621,chr8:127375622,chr8:127375624,chr8:127375625,chr8:127375626,chr8:127375627,chr8:127375628,chr8:127375629,chr8:127375630,chr8:127375631,chr8:127375632,chr8:127375633,chr8:127375634,chr8:127375635,chr8:127375636,chr8:127375637,chr8:127375638,chr8:127375639,chr8:127375640,chr8:127375641,chr8:127375642,chr8:127375643,chr8:127375644,chr8:127375645,chr8:127375646,chr8:127375647,chr8:127375648,chr8:127375649,chr8:127375651,chr8:127375652,chr8:127375653,chr8:127375654,chr8:127375655,chr8:127375656,chr8:127375657,chr8:127375658,chr8:127375661,chr8:127375662,chr8:127375663,chr8:127375665,chr8:127375652,chr8:127375639,chr8:127375663 chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291884,chr8:127291884,chr8:127291884 NA NA chr8:128387852,chr8:128387859,chr8:128387860,chr8:128387861,chr8:128387862,chr8:128387863,chr8:128387864,chr8:128387865,chr8:128387866,chr8:128387867,chr8:128387868,chr8:128387870,chr8:128387871,chr8:128387872,chr8:128387873,chr8:128387874,chr8:128387875,chr8:128387876,chr8:128387877,chr8:128387878,chr8:128387879,chr8:128387880,chr8:128387881,chr8:128387882,chr8:128387883,chr8:128387884,chr8:128387885,chr8:128387886,chr8:128387887,chr8:128387888,chr8:128387889,chr8:128387890,chr8:128387891,chr8:128387892,chr8:128387893,chr8:128387894,chr8:128387895,chr8:128387897,chr8:128387898,chr8:128387899,chr8:128387900,chr8:128387901,chr8:128387902,chr8:128387903,chr8:128387904,chr8:128387907,chr8:128387908,chr8:128387909,chr8:128387911,chr8:128387898,chr8:128387885,chr8:128387909 chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304129,chr8:128304129,chr8:128304129 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 5 3 181 78 ENST00000645438.1 ENST00000642795.1 downstream upstream none GCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|AGAACTGAGGTCGCAAGACAACAAACTGGTCCTAAATAAAAAGTAAGAAAAATGCCGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCGGAAAATGGGTGATTTCTGCATTTCCATCGGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGCACAGGTCAGTGGGTGTGCGCACCGTGCGCAAGCCAAAGCAAGGTGAGGCATTGCCTCACTTGGGAAGTGCAAGGGGTCAGGGAGTTCCCTTTCCGAGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19522 POU5F1B::PCAT1 ENSG00000212993.6::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3365 TRUE 1271 POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127339435:+ chr8:128334428-128432311:+ chr8:128351680:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127301359:+ chr8:127568568-128431295:+ chr8:128313604:+ chr8:127375606,chr8:127375613,chr8:127375614,chr8:127375615,chr8:127375616,chr8:127375617,chr8:127375618,chr8:127375619,chr8:127375620,chr8:127375621,chr8:127375622,chr8:127375624,chr8:127375625,chr8:127375626,chr8:127375627,chr8:127375628,chr8:127375629,chr8:127375630,chr8:127375631,chr8:127375632,chr8:127375633,chr8:127375634,chr8:127375635,chr8:127375636,chr8:127375637,chr8:127375638,chr8:127375639,chr8:127375640,chr8:127375641,chr8:127375642,chr8:127375643,chr8:127375644,chr8:127375645,chr8:127375646,chr8:127375647,chr8:127375648,chr8:127375649,chr8:127375651,chr8:127375652,chr8:127375653,chr8:127375654,chr8:127375655,chr8:127375656,chr8:127375657,chr8:127375658,chr8:127375661,chr8:127375662,chr8:127375663,chr8:127375665,chr8:127375652,chr8:127375639,chr8:127375663 chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291884,chr8:127291884,chr8:127291884 NA NA chr8:128387852,chr8:128387859,chr8:128387860,chr8:128387861,chr8:128387862,chr8:128387863,chr8:128387864,chr8:128387865,chr8:128387866,chr8:128387867,chr8:128387868,chr8:128387870,chr8:128387871,chr8:128387872,chr8:128387873,chr8:128387874,chr8:128387875,chr8:128387876,chr8:128387877,chr8:128387878,chr8:128387879,chr8:128387880,chr8:128387881,chr8:128387882,chr8:128387883,chr8:128387884,chr8:128387885,chr8:128387886,chr8:128387887,chr8:128387888,chr8:128387889,chr8:128387890,chr8:128387891,chr8:128387892,chr8:128387893,chr8:128387894,chr8:128387895,chr8:128387897,chr8:128387898,chr8:128387899,chr8:128387900,chr8:128387901,chr8:128387902,chr8:128387903,chr8:128387904,chr8:128387907,chr8:128387908,chr8:128387909,chr8:128387911,chr8:128387898,chr8:128387885,chr8:128387909 chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304129,chr8:128304129,chr8:128304129 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 0 3 1 181 126 ENST00000645438.1 ENST00000642795.1 downstream upstream duplicates(1) GGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTATCATACGAACGCAGCCTAACCACCTGCTACTCCAAGTGAGAGTCAAAATCCAGCAGCATTGGTCTCACCTGAAAGTAAGTACTATTGACGCATGCTACTCAAGTGAGCTCTGCTGACAGGCCACATTGACATCATCTGGGAGCCTGTGTGAAATGCGGCATCTCAAGACCCACTCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19523 POU5F1B::PCAT1 ENSG00000212993.6::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3365 TRUE 1271 POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127339435:+ chr8:128334428-128432311:+ chr8:128351680:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127375606,chr8:127375613,chr8:127375614,chr8:127375615,chr8:127375616,chr8:127375617,chr8:127375618,chr8:127375619,chr8:127375620,chr8:127375621,chr8:127375622,chr8:127375624,chr8:127375625,chr8:127375626,chr8:127375627,chr8:127375628,chr8:127375629,chr8:127375630,chr8:127375631,chr8:127375632,chr8:127375633,chr8:127375634,chr8:127375635,chr8:127375636,chr8:127375637,chr8:127375638,chr8:127375639,chr8:127375640,chr8:127375641,chr8:127375642,chr8:127375643,chr8:127375644,chr8:127375645,chr8:127375646,chr8:127375647,chr8:127375648,chr8:127375649,chr8:127375651,chr8:127375652,chr8:127375653,chr8:127375654,chr8:127375655,chr8:127375656,chr8:127375657,chr8:127375658,chr8:127375661,chr8:127375662,chr8:127375663,chr8:127375665,chr8:127375652,chr8:127375639,chr8:127375663 chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291908,chr8:127291884,chr8:127291884,chr8:127291884 NA NA chr8:128387852,chr8:128387859,chr8:128387860,chr8:128387861,chr8:128387862,chr8:128387863,chr8:128387864,chr8:128387865,chr8:128387866,chr8:128387867,chr8:128387868,chr8:128387870,chr8:128387871,chr8:128387872,chr8:128387873,chr8:128387874,chr8:128387875,chr8:128387876,chr8:128387877,chr8:128387878,chr8:128387879,chr8:128387880,chr8:128387881,chr8:128387882,chr8:128387883,chr8:128387884,chr8:128387885,chr8:128387886,chr8:128387887,chr8:128387888,chr8:128387889,chr8:128387890,chr8:128387891,chr8:128387892,chr8:128387893,chr8:128387894,chr8:128387895,chr8:128387897,chr8:128387898,chr8:128387899,chr8:128387900,chr8:128387901,chr8:128387902,chr8:128387903,chr8:128387904,chr8:128387907,chr8:128387908,chr8:128387909,chr8:128387911,chr8:128387898,chr8:128387885,chr8:128387909 chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304153,chr8:128304129,chr8:128304129,chr8:128304129 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 1 2 0 181 240 ENST00000645438.1 ENST00000646670.1 downstream upstream none GGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19526 PTGR2::CPQ ENSG00000140043.12::ENSG00000104324.16 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTGR2 ENSG00000140043.12 protein_coding + + chr14:73851831-73885726:+ chr14:73860657:+ chr14:74318534-74352429:+ chr14:74327360:+ CPQ ENSG00000104324.16 protein_coding + - chr8:96645242-97149654:+ chr8:96953610:- chr8:97657470-98161882:+ chr8:97965838:- chr14:73864665,chr14:73864667 chr8:97031457,chr8:97031457 NA NA chr14:74331368,chr14:74331370 chr8:98043685,chr8:98043685 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none N-terminal_domain_of_oxidoreductase(42%)| ADH_N_2(9%)| 2 2 4 71 5250 ENST00000555661.6 unknown downstream downstream duplicates(2) GTGAAACCACTGCCCAACCAGAGCAATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTG___GAAAAAATGGTAATCCAGTGGCAGAGAATTTCCGAATGGAAGAAGTCTATTTACCAGATAATATTAATGAAGGACAAGTACAAGTTAGAACTCTTTATCTTTCTGTGGATCCTTACATG|GACACCTGAGGAAAGAGTTTGGAAAAGAGACAGTGGTCAGAAAAGAACTGACAGGATTTTCCAGTGTCTAGAAATGCACTGCTTGAAGAGCAGCAGAATATATTACACTGGAGAAGAGAAGACTGTAAGGGGCTAGATGCTTCATCTGCAAGAAGAGTAGACTTGCCCTGAAGGAATAATCAGGCCAGTGAGAAAGAGCATATGCACATAGATTTGAGCTCAGTAAAGAATAAACCTGAGCAGTCCCACAAGGGAACAGTACTCCCCAG MIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYM|dt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19527 ENSG00000258653::CPQ ENSG00000258653.3::ENSG00000104324.16 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258653 ENSG00000258653.3 protein_coding + + chr14:73851971-73932278:+ chr14:73860657:+ chr14:74318674-74398981:+ chr14:74327360:+ CPQ ENSG00000104324.16 protein_coding + - chr8:96645242-97149654:+ chr8:96953610:- chr8:97657470-98161882:+ chr8:97965838:- chr14:73864665,chr14:73864667 chr8:97031457,chr8:97031457 NA NA chr14:74331368,chr14:74331370 chr8:98043685,chr8:98043685 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none none ADH_N_2(9%)| 2 2 4 71 5250 ENST00000556551.2 unknown downstream downstream duplicates(2) GTGAAACCACTGCCCAACCAGAGCAATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTG___GAAAAAATGGTAATCCAGTGGCAGAGAATTTCCGAATGGAAGAAGTCTATTTACCAGATAATATTAATGAAGGACAAGTACAAGTTAGAACTCTTTATCTTTCTGTGGATCCTTACATG|GACACCTGAGGAAAGAGTTTGGAAAAGAGACAGTGGTCAGAAAAGAACTGACAGGATTTTCCAGTGTCTAGAAATGCACTGCTTGAAGAGCAGCAGAATATATTACACTGGAGAAGAGAAGACTGTAAGGGGCTAGATGCTTCATCTGCAAGAAGAGTAGACTTGCCCTGAAGGAATAATCAGGCCAGTGAGAAAGAGCATATGCACATAGATTTGAGCTCAGTAAAGAATAAACCTGAGCAGTCCCACAAGGGAACAGTACTCCCCAG MIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYM|dt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19532 PCAT1::SDC2 ENSG00000253438.5::ENSG00000169439.12 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127031745:- chr8:127568568-128431295:+ chr8:128043990:- SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96593480:+ chr8:97506041-97624018:+ chr8:97605708:+ chr8:127025107,chr8:127025110,chr8:127025115,chr8:127025112,chr8:127025113,chr8:127025114,chr8:127025119,chr8:127025109 chr8:96591587,chr8:96591584,chr8:96591584,chr8:96591584,chr8:96591584,chr8:96591584,chr8:96591584,chr8:96591595 NA NA chr8:128037352,chr8:128037355,chr8:128037360,chr8:128037357,chr8:128037358,chr8:128037359,chr8:128037364,chr8:128037354 chr8:97603815,chr8:97603812,chr8:97603812,chr8:97603812,chr8:97603812,chr8:97603812,chr8:97603812,chr8:97603823 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Syndecan_domain(100%) |Syndecan(100%) 1 3 0 2 1172 unknown ENST00000302190.9 upstream upstream duplicates(1) AAAAATGGATGTTCAGAGAGAACAACAAACATGCCTCAAGATACACAGCTAGTATGTGGTAGTGACAAGAATCTAGCACAAGCAGTCTGATTTCAG|AGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGAC...TCGG___GAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACAaCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGAC...GACAAAG___TCACCTGAAGAAACTGATAAAGAGAAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGACCCAGCCGAAGAGGATACAAATGTGTATACTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19541 APEH::RNF123 ENSG00000164062.13::ENSG00000164068.16 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3367 FALSE NA APEH ENSG00000164062.13 protein_coding + + chr3:49674014-49683971:+ chr3:49675787:+ chr3:49711447-49721404:+ chr3:49713220:+ RNF123 ENSG00000164068.16 protein_coding + + chr3:49689538-49721529:+ chr3:49697363:+ chr3:49726971-49758962:+ chr3:49734796:+ chr3:49676826,chr3:49676824 chr3:49696931,chr3:49696926 NA NA chr3:49714259,chr3:49714257 chr3:49734364,chr3:49734359 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |SPRY_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%) APEH_N(54%)|LRR_6(100%),LRR_8(100%),SPRY(100%),zf-C3HC4_3(100%) 0 1 0 614 76 ENST00000446089.5 ENST00000457726.5 downstream upstream none CGGGCCCTGGGGAAGAGAAGCAGTTCCTGGAG|GACAGGTTGAAGGGCGGCTTGGCCCATCCACTGTGGTCCTGGACCACACAGGCGGCTTTGAGGGGCTTC...AGATCATCTGTTCCCTTCTGTAGAGCCATATGCATCCAAGGCTGGTGATTGGTGGGCTCTGGCCCAGcCCCTGCCTGCCTCACCAGGGACCTCAT GPWGREAVPG|gQVEGRLGPSTVVLDHTGGFEGL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19546 UBR1::ENSG00000285080 ENSG00000159459.12::ENSG00000285080.1 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBR1 ENSG00000159459.12 protein_coding - - chr15:42942897-43106113:- chr15:43105942:- chr15:43235095-43398311:- chr15:43398140:- ENSG00000285080 ENSG00000285080.1 lncRNA - - chr15:43106225-43185779:- chr15:43131142:- chr15:43398423-43477977:- chr15:43423340:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 6 0 128 8 ENST00000290650.9 ENST00000570199.2 upstream downstream mismatches(1) TGGCGGACGAGGAGGCTGGAGGTACTGAGAGGATGGAAATCAGCGCGGAGTTACCCCAGACCCCTCAGCGTCTGGCATCT|GCTTATCATCTGTCTTCCACTTATCCAACAAGCTGCTATGGCCACTGCCTGTGCCGCACCTGGAACCACCGCCAGCCCCACTACTGCCTCCACTACCACTGGTTCTCCCACCCTGATCAGCTGCTTGCTGCTGCCATCTTATCCGCTTCTGC ADEEAGGTERMEISAELPQTPQRLAS|ayhlsstyptscyghclcrtwnhrqphyclhyhwfshpdqllaaailsas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19548 PPM1E::TRIM37 ENSG00000175175.6::ENSG00000108395.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58972925:+ chr17:56833215-57062540:+ chr17:57050286:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:58982921:- chr17:57059999-57184282:- chr17:57060282:- chr17:58976883,chr17:58976879 chr17:58985843,chr17:58985847 NA NA chr17:57054244,chr17:57054240 chr17:57063204,chr17:57063208 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Protein_phosphatase_2C(68%)| PP2C(49%)| 3 1 1 114 116 ENST00000308249.4 ENST00000393066.7 downstream downstream duplicates(1) TGTTGAACTAATGAAGCCACACAAACCAGACAGAGAG___GATGAAAAGCAGAGAATTGAGGCCCTTGGAGGTTGCGTAGTCTGGTTTGGTGCCTGGAGGGTGAATGGAAGTCTGTCGGTTTCCAGAGCTATTG|ATAATTTGATTTGAAACTGACACTGCACCTGATGGGTTAACAAGATCTAGGCTTCAGAAGGTGACAGATATGAGTGAGGACCATGTGTGGGGCAAAGCCTCAGAATGAT VELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAI|dnli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19556 BACE1::RNF214 ENSG00000186318.18::ENSG00000167257.11 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BACE1 ENSG00000186318.18 protein_coding - - chr11:117285232-117316259:- chr11:117315535:- chr11:117155948-117186975:- chr11:117186251:- RNF214 ENSG00000167257.11 protein_coding + - chr11:117232625-117286454:+ chr11:117273927:- chr11:117103341-117157170:+ chr11:117144643:- chr11:117308977 chr11:117283683 NA NA chr11:117179693 chr11:117154399 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Eukaryotic_aspartyl_protease(3%)| Asp(0%)| 0 2 1 56 7 ENST00000313005.11 unknown upstream downstream none CCGAGGAGCCCGGCCGGAGGGGCAGCTTTGTGGAGATGGTGGACAACCTGAGGGGCAAGTCGGGGCAGGGCTACTACGTGGAGATGACCGTGGGCAGCCCCCCGCAGACG|ATATTCTTTCAGATCCTGCATAGCAGTGAAATTATTGACATCAGCCTGTCTGAAGGACCCCACTGACGCCAGTTGGTCTGAAGGATCCCAGAGGAGCTGACTCACCAAAGAATGCAGTTTCCACATCTTGATGATTTCATCCCCCGTATCCCAACCAATCAACGACCTCAATTTTCCCGCCCCTTACCTTCCACAATCCCCTTAAAACTTAAAATACCAGCCCATAACTCCTCAGGGG EEPGRRGSFVEMVDNLRGKSGQGYYVEMTVGSPPQT|iffqilhsseiidislsegph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19559 CARS2::LINC03082 ENSG00000134905.17::ENSG00000275830.4 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CARS2 ENSG00000134905.17 protein_coding - - chr13:110641412-110713603:- chr13:110683051:- chr13:111293759-111365950:- chr13:111335398:- LINC03082 ENSG00000275830.4 lncRNA - - chr13:109988097-110129136:- chr13:110036971:- chr13:110640444-110781483:- chr13:110689318:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none tRNA_synthetases_class_I_(C)_catalytic_domain(50%)| tRNA-synt_1e(38%),tRNA-synt_1g(46%)| 0 1 1 403 14 ENST00000257347.9 ENST00000670698.1 upstream downstream none CCTGAGGGTAACCGAAAATATTCCTCAGATAATTTCTTTCATTGAAGGAATCATTGCTCGTGGGAACGCTTATTCAACGGCAAAAG___GCAATGTCTACTTCG...GGCAAATTGGTCGGCGTGGTCCCTGGTCCAGTCGGAGAGCCAG|GACTAAGCCAGTGGATCACAAACATCCTGGAGAGCAGTGACTCTGTGATTCCATCACA...TGGTGGCAGGGGCTGATACTCAGCCGGGCCAGGGTGCTCTCCTGTTAACCATAACCAAGCTCACAGGACATGGGATGAGCCCACTGTGTGACACAGGGAGC GKLVGVVPGPVGEP|glsqwitnilessdsvips NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19587 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1831 TRUE 3372 TRUE 1272 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39372596:+ chr1:39546988-39952849:+ chr1:39838268:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243330540:+ chr1:243419336-243663393:+ chr1:243493842:+ chr1:39374855,chr1:39374850,chr1:39374855,chr1:39374852,chr1:39374853,chr1:39374854,chr1:39375162,chr1:39374830,chr1:39430062 chr1:243324002,chr1:243324002,chr1:243324004,chr1:243324004,chr1:243324004,chr1:243324009,chr1:243324004,chr1:243324004,chr1:243299073 NA NA chr1:39840527,chr1:39840522,chr1:39840527,chr1:39840524,chr1:39840525,chr1:39840526,chr1:39840834,chr1:39840502,chr1:39895734 chr1:243487304,chr1:243487304,chr1:243487306,chr1:243487306,chr1:243487306,chr1:243487311,chr1:243487306,chr1:243487306,chr1:243462375 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(49%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(2%),Spectrin_like(100%)|CCCAP(69%) 301 300 298 2255 1145 ENST00000361689.7 ENST00000366541.8 downstream upstream duplicates(200),low_entropy(1),mismatches(86),multimappers(2) CGGAAGCTGGTCAGGACCTTCCAGAAATGGTTGAAAGAAACTGAAGGGAGTATTCCACCTACGGAAACTTCTATGAGTGCTAAAGAGTTAGAAAAGCAGATTGAACACCTGAAG___AGTCTACTAGATGACTGGGCAAGTAAGGGAACTCTGGTGGAAGAAATCAATTGCAAAGGTACTTCTTTAGAAAATCTCATCATGGAAATCACAGCACCTGATTCCCAAGGCAAGACAG|GCTTTAATCCAGTGTGACCAGTTGAGGAAGGAGCTGGAGAGGCAGGCGGAGCGACTTGAAAAAGAtCTTGCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGATGAAAAAGGAAATAACGAAAGAAAGGGAGTACATGGGATCAAAG___ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAA RKLVRTFQKWLKETEGSIPPTETSMSAKELEKQIEHLKSLLDDWASKGTLVEEINCKGTSLENLIMEITAPDSQGKT|gfnpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19588 SDCCAG8::MACF1 ENSG00000054282.16::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1832 TRUE 3373 TRUE 1273 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378863:+ chr1:243419336-243663393:+ chr1:243542165:+ MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39378461:+ chr1:39546988-39952849:+ chr1:39844133:+ chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243430611,chr1:243429995,chr1:243430074 chr1:39375321,chr1:39375317,chr1:39375313,chr1:39375310,chr1:39375298,chr1:39375293,chr1:39375291,chr1:39375290,chr1:39375283,chr1:39375292,chr1:39375267,chr1:39375268,chr1:39375314,chr1:39375266,chr1:39375286,chr1:39375318,chr1:39375263,chr1:39375259,chr1:39375256,chr1:39375254,chr1:39375252,chr1:39375251,chr1:39375258,chr1:39365250,chr1:39365251,chr1:39365314 NA NA chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243593913,chr1:243593297,chr1:243593376 chr1:39840993,chr1:39840989,chr1:39840985,chr1:39840982,chr1:39840970,chr1:39840965,chr1:39840963,chr1:39840962,chr1:39840955,chr1:39840964,chr1:39840939,chr1:39840940,chr1:39840986,chr1:39840938,chr1:39840958,chr1:39840990,chr1:39840935,chr1:39840931,chr1:39840928,chr1:39840926,chr1:39840924,chr1:39840923,chr1:39840930,chr1:39830922,chr1:39830923,chr1:39830986 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Centrosomal_colon_cancer_autoantigen_protein_family(76%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(90%) CCCAP(50%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(97%) 232 301 298 1373 1887 ENST00000366541.8 ENST00000361689.7 downstream upstream duplicates(224),mismatches(52),multimappers(5) AGCTGAATAAAACCAACATGGAGAAGGATGAGGCAGAAAAGGAGCACAGAGAGTTCAGAGCAAAAACTAACAGGGATCTTGAAATTAAAGATCAG___GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAG|GTTCCATACTGCCCTCTGTAGGAAGCTCTGTAGGCAGTGTAAACGGATACCACACCTGCAAAG___ATCTGACGGAGATCCAGTGTGACATGTCAGATGTAAACTTGAAGTATGAGAAACTAGGGGGAGTACTTCATGAACGCCAGGAAAGCCTTCAGGCTATCCTCAACAGAATGGAGGAGGTTCACAAGGAGGCAAACTCTGTGCTGCAGTGGCTGGAATCAAAA LNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTr|fhtalcrklcrqckriphlqrsdgdpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19589 SDCCAG8::MACF1 ENSG00000054282.16::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3373 TRUE 1273 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378863:+ chr1:243419336-243663393:+ chr1:243542165:+ MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39379203:+ chr1:39546988-39952849:+ chr1:39844875:+ chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243430611,chr1:243429995,chr1:243430074 chr1:39375321,chr1:39375317,chr1:39375313,chr1:39375310,chr1:39375298,chr1:39375293,chr1:39375291,chr1:39375290,chr1:39375283,chr1:39375292,chr1:39375267,chr1:39375268,chr1:39375314,chr1:39375266,chr1:39375286,chr1:39375318,chr1:39375263,chr1:39375259,chr1:39375256,chr1:39375254,chr1:39375252,chr1:39375251,chr1:39375258,chr1:39365250,chr1:39365251,chr1:39365314 NA NA chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243593913,chr1:243593297,chr1:243593376 chr1:39840993,chr1:39840989,chr1:39840985,chr1:39840982,chr1:39840970,chr1:39840965,chr1:39840963,chr1:39840962,chr1:39840955,chr1:39840964,chr1:39840939,chr1:39840940,chr1:39840986,chr1:39840938,chr1:39840958,chr1:39840990,chr1:39840935,chr1:39840931,chr1:39840928,chr1:39840926,chr1:39840924,chr1:39840923,chr1:39840930,chr1:39830922,chr1:39830923,chr1:39830986 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Centrosomal_colon_cancer_autoantigen_protein_family(76%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(90%) CCCAP(50%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(97%) 7 11 184 1373 1894 ENST00000366541.8 ENST00000361689.7 downstream upstream duplicates(57),mismatches(16) ACCAACATGGAGAAGGATGAGGCAGAAAAGGAGCACAGAGAGTTCAGAGCAAAAACTAACAGGGATCTTGAAATTAAAGATCAG___GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAG|ATCTGACGGAGATCCAGTGTGACATGTCAGATGTAAACTTGAAGTATGAGAAACTAGGGGGAGTACTTCATGAACGCCAGGAAAGCCTTCAGGCTATCCTCAACAGAATGGAGGAGGTTCACAAGGAGGCAAACTCTGTGCTGCAGTGGCTGGAATCAAAAGAGGAAGTCCTGAAATCCATGGATGCCATGTCATCTCCAACCAAGACAGAAACAGTGAAAGCCCAAGCTGAATCTAACAAG___GCCTTCCTGGCTGAGTTGGAAC TNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTr|sdgdpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19590 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3372 TRUE 1272 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39370186:+ chr1:39546988-39952849:+ chr1:39835858:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243330540:+ chr1:243419336-243663393:+ chr1:243493842:+ chr1:39374855,chr1:39374850,chr1:39374855,chr1:39374852,chr1:39374853,chr1:39374854,chr1:39375162,chr1:39374830,chr1:39430062 chr1:243324002,chr1:243324002,chr1:243324004,chr1:243324004,chr1:243324004,chr1:243324009,chr1:243324004,chr1:243324004,chr1:243299073 NA NA chr1:39840527,chr1:39840522,chr1:39840527,chr1:39840524,chr1:39840525,chr1:39840526,chr1:39840834,chr1:39840502,chr1:39895734 chr1:243487304,chr1:243487304,chr1:243487306,chr1:243487306,chr1:243487306,chr1:243487311,chr1:243487306,chr1:243487306,chr1:243462375 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(49%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(2%),Spectrin_like(100%)|CCCAP(69%) 3 4 153 2114 1145 ENST00000361689.7 ENST00000366541.8 downstream upstream duplicates(29),mismatches(18),multimappers(2) GCATCAGGACAGGGTACAGAATCTAAGAAAAGACTTCACAGAGCTACAGAAGACAGTTAAAGAGAG___AGAGAAAGATGCATCATCTTGCCAGGAACAGTTGGATGAATTCCGGAAGCTGGTCAGGACCTTCCAGAAATGGTTGAAAGAAACTGAAGGGAGTATTCCACCTACGGAAACTTCTATGAGTGCTAAAGAGTTAGAAAAGCAGATTGAACACCTGAAG|GCTTTAATCCAGTGTGACCAGTTGAGGAAGGAGCTGGAGAGGCAGGCGGAGCGACTTGAAAAAGAtCTTGCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGATGAAAAAGGAAATAACGAAAGAAAGGGAGTACATGGGATCAAAG___ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAG HQDRVQNLRKDFTELQKTVKEREKDASSCQEQLDEFRKLVRTFQKWLKETEGSIPPTETSMSAKELEKQIEHLK|ALIQCDQLRKELERQAERLEKdLASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19591 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3372 TRUE 1272 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39368314:+ chr1:39546988-39952849:+ chr1:39833986:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243330540:+ chr1:243419336-243663393:+ chr1:243493842:+ chr1:39374855,chr1:39374850,chr1:39374855,chr1:39374852,chr1:39374853,chr1:39374854,chr1:39375162,chr1:39374830,chr1:39430062 chr1:243324002,chr1:243324002,chr1:243324004,chr1:243324004,chr1:243324004,chr1:243324009,chr1:243324004,chr1:243324004,chr1:243299073 NA NA chr1:39840527,chr1:39840522,chr1:39840527,chr1:39840524,chr1:39840525,chr1:39840526,chr1:39840834,chr1:39840502,chr1:39895734 chr1:243487304,chr1:243487304,chr1:243487306,chr1:243487306,chr1:243487306,chr1:243487311,chr1:243487306,chr1:243487306,chr1:243462375 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(49%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(2%),Spectrin_like(100%)|CCCAP(69%) 0 1 38 1855 1145 ENST00000361689.7 ENST00000366541.8 downstream upstream duplicates(3),multimappers(2) ACAAAAGTCGGATGCTGGCCTCTGGAAATCAGCCAGATCAAGATATTACACATTTCTTCCAACAGATCCAG___GAGCTCAATTTGGAAATGGAAGACCAACAGGAGAACCTAGATACTCTTGAGCACCTGGTCACTGAACTGAGCTCTTGTGGCTTTGCGCTGGACTTGTGCCAGCATCAGGACAGGGTACAGAATCTAAGAAAAGACTTCACAGAGCTACAGAAGACAGTTAAAGAGAG|GCTTTAATCCAGTGTGACCAGTTGAGGAAGGAGCTGGAGAGGCAGGCGGAGCGACTTGAAAAAGAtCTTGCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGATGAAAAAGGAAATAACGAAAGAAAGGGAGTACATGGGATCAAAG___ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAGG KSRMLASGNQPDQDITHFFQQIQELNLEMEDQQENLDTLEHLVTELSSCGFALDLCQHQDRVQNLRKDFTELQKTVKEr|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19592 SDCCAG8::MACF1 ENSG00000054282.16::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3373 TRUE 1273 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378863:+ chr1:243419336-243663393:+ chr1:243542165:+ MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39381953:+ chr1:39546988-39952849:+ chr1:39847625:+ chr1:243430074,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243430611,chr1:243429995 chr1:39365314,chr1:39375321,chr1:39375317,chr1:39375313,chr1:39375310,chr1:39375298,chr1:39375293,chr1:39375291,chr1:39375290,chr1:39375283,chr1:39375292,chr1:39375267,chr1:39375268,chr1:39375314,chr1:39375266,chr1:39375286,chr1:39375318,chr1:39375263,chr1:39375259,chr1:39375256,chr1:39375254,chr1:39375252,chr1:39375251,chr1:39375258,chr1:39365250,chr1:39365251 NA NA chr1:243593376,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243593913,chr1:243593297 chr1:39830986,chr1:39840993,chr1:39840989,chr1:39840985,chr1:39840982,chr1:39840970,chr1:39840965,chr1:39840963,chr1:39840962,chr1:39840955,chr1:39840964,chr1:39840939,chr1:39840940,chr1:39840986,chr1:39840938,chr1:39840958,chr1:39840990,chr1:39840935,chr1:39840931,chr1:39840928,chr1:39840926,chr1:39840924,chr1:39840923,chr1:39840930,chr1:39830922,chr1:39830923 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Centrosomal_colon_cancer_autoantigen_protein_family(76%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(85%) CCCAP(50%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(94%) 0 1 3 1373 1590 ENST00000366541.8 ENST00000361689.7 downstream upstream duplicates(1) CCAACATGGAGAAGGATGAGGCAGAAAAGGAGCACAGAGAGTTCAGAGCAAAAACTAACAGGGATCTTGAAATTAAAGATCAG___GAAATAGAGAAATTGAGA...CAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGCACCTCACCAG|ATTCCCGATGGGAAAGGGCCACTGcGGTTACTGTGGCTttGCgAA...ATCTGCAAGTCATCTGGCCTGCTTCCAGGCTGCAGAATCCCAGCTCCGGCCGTGGCTGATGGAGAAAGAACTGATGATGGGAGTGCTGGGGCCCCTGTCTA...ACCAGCCAAGTACAGAAAGAACTCCAGAGCATCAATCAGAAATGGGTTGAGCTGACTGACAAACTCAACTCCCGTTCCAGCCAAATTGACCAAGCTATTGT QHLEQEQQKAALAREECLRLTELLGESEHQLHLTr|fpmgkghcgycgfa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19593 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3372 TRUE 1272 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39388658:+ chr1:39546988-39952849:+ chr1:39854330:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243415702:+ chr1:243419336-243663393:+ chr1:243579004:+ chr1:39430062 chr1:243299073 NA NA chr1:39895734 chr1:243462375 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(28%)|Centrosomal_colon_cancer_autoantigen_protein_family(23%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(6%),Spectrin_like(100%)|CCCAP(34%) 0 1 0 2804 1765 ENST00000361689.7 ENST00000366541.8 downstream upstream duplicates(2) GAGGCCCTCCAGTGGGTAGTGGGGACCGAAGTGGAAATCATCAACCAACAATTAGCAGATTTTAAA|ACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGAC EALQWVVGTEVEIINQQLADFK|tgkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19594 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3372 TRUE 1272 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39388658:+ chr1:39546988-39952849:+ chr1:39854330:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:39430062 chr1:243299073 NA NA chr1:39895734 chr1:243462375 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(28%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(6%),Spectrin_like(100%)|CCCAP(4%) 1 0 0 2804 6860 ENST00000361689.7 ENST00000366541.8 downstream upstream duplicates(2) CTCTGGATTTGTTAGGTCTCAAAAGGGAGCTAGAAGCCCTGAACAAACAGTGTGGCAAACTGACAGAGAGGGGGAAAGCTCGTCAGGAACAGCTGGAACTG...CAGAGGCCCTCCAGTGGGTAGTGGGGACCGAAGTGGAAATCATCAACCAACAATTAGCAGATTTTAAA|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCAC EALQWVVGTEVEIINQQLADFK|akaag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19595 COPA::DEDD ENSG00000122218.17::ENSG00000158796.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3374 TRUE 1274 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160294484:- chr1:160258384-160313356:- chr1:160264274:- DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130847:- chr1:161090764-161102478:- chr1:161100637:- chr1:160294361,chr1:160294361,chr1:160294366,chr1:160294373,chr1:160294371 chr1:161132148,chr1:161132146,chr1:161132150,chr1:161132151,chr1:161132150 NA NA chr1:160264151,chr1:160264151,chr1:160264156,chr1:160264163,chr1:160264161 chr1:161101938,chr1:161101936,chr1:161101940,chr1:161101941,chr1:161101940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_(COPI)_alpha_subunit_C-terminus(19%),Coatomer_WD_associated_region_(100%),WD_domain__G-beta_repeat(100%)|Death_effector_domain(100%) ANAPC4_WD40(100%),COPI_C(22%),Coatomer_WDAD(100%),WD40(100%)|CN_hydrolase(100%),DED(100%) 222 300 286 2313 1126 ENST00000241704.8 ENST00000368006.8 upstream downstream duplicates(174),low_entropy(6),mismatches(20) ACTGGCTGCTGACATTGACATTGACACTGTTGGTACAGAGGGCTGGGGAGAGGATGCAGAGCTGCAGTTGGATGAAG___ATGGGTTTGTGGAGGCTACAGAAGGTTTGGGGGATGATGCTCTTGGCAAGGGACAGGAAGAAGGAGGTGGCTGGGATGTAGAAGAAGATCTGGAGCTCCCTCCTGAGCTG|GAAGAGACCTGGGAAATTAAGTTTCTTGCGGAG___TACGGTGGGGATTGCAGCTGCTGAGCAGGGATTCTGGAAAGCATTGCGTACCTGAGCCCCCAGCATGGCGGGCCTAAAGCGGCGGGCAAGCCAGGTGTGGCCAGAAGAGCATGGTGAGCAGGAACATGGGCTGTACAGCCTGCACCGCATGTTTGACATCGTGGGCACTCATCTGACACACAGAGATGTGCGCGTGCTTTCT LAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPEL|eetweikflaeyggdcsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19596 COPA::DEDD ENSG00000122218.17::ENSG00000158796.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3374 TRUE 1274 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160294484:- chr1:160258384-160313356:- chr1:160264274:- DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130843:- chr1:161090764-161102478:- chr1:161100633:- chr1:160294361,chr1:160294361,chr1:160294366,chr1:160294373,chr1:160294371 chr1:161132148,chr1:161132146,chr1:161132150,chr1:161132151,chr1:161132150 NA NA chr1:160264151,chr1:160264151,chr1:160264156,chr1:160264163,chr1:160264161 chr1:161101938,chr1:161101936,chr1:161101940,chr1:161101941,chr1:161101940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_(COPI)_alpha_subunit_C-terminus(19%),Coatomer_WD_associated_region_(100%),WD_domain__G-beta_repeat(100%)|Death_effector_domain(100%) ANAPC4_WD40(100%),COPI_C(22%),Coatomer_WDAD(100%),WD40(100%)|CN_hydrolase(100%),DED(100%) 24 17 277 2313 1126 ENST00000241704.8 ENST00000490843.6 upstream downstream duplicates(75),mismatches(17) GGAGCACTGGCTGCTGACATTGACATTGACACTGTTGGTACAGAGGGCTGGGGAGAGGATGCAGAGCTGCAGTTGGATGAAG___ATGGGTTTGTGGAGGCTACAGAAGGTTTGGGGGATGATGCTCTTGGCAAGGGACAGGAAGAAGGAGGTGGCTGGGATGTAGAAGAAGATCTGGAGCTCCCTCCTGAGCTG|AGACCTGGGAAATTAAGTTTCTTGCGGAG___TACGGTGGGGATTGCAGCTGCTGAGCAGGGATTCTGGAAAGCATTGCGTACCTGAGCCCCCAGCATGGCGGGCCTAAAGCGGCGGGCAAGCCAGGTGTGGCCAGAAGAGCATGGTGAGC GALAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPEL|rpgklsflrstvgiaaaeqgfwkalrt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19597 COPA::DEDD ENSG00000122218.17::ENSG00000158796.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3374 TRUE 1274 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160294484:- chr1:160258384-160313356:- chr1:160264274:- DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161124526:- chr1:161090764-161102478:- chr1:161094316:- chr1:160294361,chr1:160294361,chr1:160294366,chr1:160294373,chr1:160294371 chr1:161132148,chr1:161132146,chr1:161132150,chr1:161132151,chr1:161132150 NA NA chr1:160264151,chr1:160264151,chr1:160264156,chr1:160264163,chr1:160264161 chr1:161101938,chr1:161101936,chr1:161101940,chr1:161101941,chr1:161101940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_(COPI)_alpha_subunit_C-terminus(19%),Coatomer_WD_associated_region_(100%),WD_domain__G-beta_repeat(100%)|Death_effector_domain(100%) ANAPC4_WD40(100%),COPI_C(22%),Coatomer_WDAD(100%),WD40(100%)|CN_hydrolase(100%),DED(100%) 1 1 217 2313 1259 ENST00000241704.8 ENST00000545495.5 upstream downstream duplicates(52),mismatches(14) CTGGCTGCTGACATTGACATTGACACTGTTGGTACAGAGGGCTGGGGAGAGGATGCAGAGCTGCAGTTGGATGAAG___ATGGGTTTGTGGAGGCTACAGAAGGTTTGGGGGATGATGCTCTTGGCAAGGGACAGGAAGAAGGAGGTGGCTGGGATGTAGAAGAAGATCTGGAGCTCCCTCCTGAGCTG|TACGGTGGGGATTGCAGCTGCTGAGCAGGGATTCTGGAAAGCATTGCGTACCTGAGCCCCCAGCATGGCGGGCCTAAAGCGGCGGGCAAGCCAGGTGTGGCCAGAAGAGCATGGTGAGCAGGAACATGGGCTGTACAGCCTGCACCGCATGTTTGACATCGTGGGCACTCATCTGACACACAGAGATGTGCGCGTGCTTTCTTTCCTCTTTGTTGATGTCATTGATGACCACGAGCGTGGACTCATCCGAAATGGACGTGAC LAADIDIDTVGTEGWGEDAELQLDEDGFVEATEGLGDDALGKGQEEGGGWDVEEDLELPPEL|yggdcsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19598 COPA::DEDD ENSG00000122218.17::ENSG00000158796.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3374 TRUE 1274 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160294768:- chr1:160258384-160313356:- chr1:160264558:- DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130847:- chr1:161090764-161102478:- chr1:161100637:- chr1:160294361,chr1:160294361,chr1:160294366,chr1:160294373,chr1:160294371 chr1:161132148,chr1:161132146,chr1:161132150,chr1:161132151,chr1:161132150 NA NA chr1:160264151,chr1:160264151,chr1:160264156,chr1:160264163,chr1:160264161 chr1:161101938,chr1:161101936,chr1:161101940,chr1:161101941,chr1:161101940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_(COPI)_alpha_subunit_C-terminus(10%),Coatomer_WD_associated_region_(100%),WD_domain__G-beta_repeat(100%)|Death_effector_domain(100%) ANAPC4_WD40(100%),COPI_C(17%),Coatomer_WDAD(100%),WD40(100%)|CN_hydrolase(100%),DED(100%) 0 1 88 2801 1126 ENST00000241704.8 ENST00000368006.8 upstream downstream duplicates(13),mismatches(7) GCCACCTGCACCTATCATGCCATTGGATACCAATTGGCCTTTATTGACTGTATCCAAAGGATTTTTTGAAGGCACCATTGCCAGCAAAG___GGAAGGGAGGAGCACTGGCTGCTGACATTGACATTGACACTGTTGGTACAGAGGGCTGGGGAGAGGATGCAGAGCTGCAGTTGGATGAAG|GAAGAGACCTGGGAAATTAAGTTTCTTGCGGAG___TACGGTGGGGATTGCAGCTGCTGAGCAGGGATTCTGGAAAGCATTGCGTACCTGAGCCCCCAGCATGGCGGGCCTAAAGCGGCGGGCAAGCCAGGT PPAPIMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDTVGTEGWGEDAELQLDE|grdlgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19603 NCSTN::ENSG00000282564 ENSG00000162736.18::ENSG00000282564.3 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCSTN ENSG00000162736.18 protein_coding + + chr1:160343294-160358952:+ chr1:160344826:+ chr1:160313084-160328742:+ chr1:160314616:+ ENSG00000282564 ENSG00000282564.3 lncRNA + + chr1:230426491-230641806:+ chr1:230517558:+ chr1:230562237-230777552:+ chr1:230653304:+ chr1:160346315,chr1:160346315,chr1:160346306,chr1:160346309,chr1:160346308,chr1:160346304,chr1:160346310,chr1:160346308,chr1:160346305 chr1:230506911,chr1:230506913,chr1:230506907,chr1:230506902,chr1:230506902,chr1:230506902,chr1:230506905,chr1:230506922,chr1:230506902 NA NA chr1:160316105,chr1:160316105,chr1:160316096,chr1:160316099,chr1:160316098,chr1:160316094,chr1:160316100,chr1:160316098,chr1:160316095 chr1:230642657,chr1:230642659,chr1:230642653,chr1:230642648,chr1:230642648,chr1:230642648,chr1:230642651,chr1:230642668,chr1:230642648 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Nicastrin_small_lobe(8%)| Ncstrn_small(0%)| 107 95 107 1060 323 ENST00000459963.6 unknown downstream upstream duplicates(63),low_entropy(1),mismatches(19),multimappers(4) CGGCAGGGGGTGGCTCTGGGGCTGACCCGGGAAGTCGGGGTCTCCTTCGCCTTCTGTCTTTCTGCGTCCTACTAGCAG___GTTTGTGCAGGGGAAACTCAGTGGAGAGGAAGATATATATCCCCTTAAATAAAACAGCTCCCTGTGTTCGCCTGCTCAACGCCACTCATCAGATTGGCTGCCAGT|ACACACACAGAGGGAAGACAGTGTGAGGATGCAGGGAGAAGCTGACCATCTACCAGACAAGCACAGAGGACTCAGAGGAAGCCGATCCTGCCGACACCCGGACCTCAGACTTCCAGCCTCCAGAACGTGAGAGTCAATTCTTGTGATTTAAGCCACCCAGCGGGCCGGACTTTGTGATGGTCGCCTTGGCACATTGATACAGTGTGTGTGCATGCATGTGTTTCATCTTTTCTTACCAGACCTAAAATGTGCTTTGCAGGGAGCAG AGGGSGADPGSRGLLRLLSFCVLLAGLCRGNSVERKIYIPLNKTAPCVRLLNATHQIGCQ|ythrgktv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19604 P4HB::ASPSCR1 ENSG00000185624.16::ENSG00000169696.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA P4HB ENSG00000185624.16 protein_coding - - chr17:81843159-81860856:- chr17:81855142:- chr17:79801035-79818732:- chr17:79813018:- ASPSCR1 ENSG00000169696.16 protein_coding + - chr17:81976807-82017406:+ chr17:81997221:- chr17:79934683-79975282:+ chr17:79955097:- chr17:81850880,chr17:81851160,chr17:81851191 chr17:81999797,chr17:81999787,chr17:81999804 NA NA chr17:79808756,chr17:79809036,chr17:79809067 chr17:79957673,chr17:79957663,chr17:79957680 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Thioredoxin(62%),Thioredoxin-like_domain(46%)| Calsequestrin(33%),OST3_OST6(100%),Thioredoxin(39%),Thioredoxin_2(100%),Thioredoxin_6(32%),Thioredoxin_7(100%)| 124 26 102 3005 190 ENST00000681566.1 unknown upstream downstream duplicates(73),low_entropy(2),mismatches(45),multimappers(3) GGAATATACAG___CTGGCAGAGAGGCTGATGACATCGTGAACTGGCTGAAGAAGCGCACGGGCCCGGCTGCCACCACCCTGCCTGACGGCGCAGCTGCAGAGTCCTTGGTGGAGTCCAGCGAGGTGGCTGTCATCGGCTTCTTCAAG___GACGTGGAGTCGGACTCTGCCAAGCAGTTTTTGCAGGCAGCAGAGGCCATCGATGACATACCATTTGGGATCACTTCCAACAGTGACGTGTTCTCCAAATACCAGCTCGACAAAGATGGGGTTGTCCTCTTTAAGAAG|GGCGGCCCTGCTCTGTGCCACACATCACGGAGCCAACACGGAGCTGACACAGTTGCCGCCTTGTCATGGAGCCAACACGGCCTCATCCCGGAGCCCACACGGCCTCATCCCGGAGC??ACACGGCCTCATCCCGGAGCAGACACAGCCACCGTCTCAGTAAAGC EYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKK|ggpalchtsrsqhgadtvaalswsqhglipeptrphpga?tassrsrhshrlsk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19606 CYRIB::ASAP1 ENSG00000153310.22::ENSG00000153317.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1834 TRUE 3377 TRUE 1275 CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129871375:- chr8:130851839-131029750:- chr8:130883621:- ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130137038:- chr8:131064350-131455920:- chr8:131149284:- chr8:129869175,chr8:129869179,chr8:129869181 chr8:130149231,chr8:130149232,chr8:130149232 NA NA chr8:130881421,chr8:130881425,chr8:130881427 chr8:131161477,chr8:131161478,chr8:131161478 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CYRIA/CYRIB_Rac1_binding_domain(15%)|Ankyrin_repeats_(3_copies)(100%),PH_domain(60%),Putative_GTPase_activating_protein_for_Arf(100%),SH3_domain(100%) DUF1394(23%)|Ank(100%),Ank_2(100%),ArfGap(100%),PH(28%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 38 22 59 1344 671 ENST00000694912.1 ENST00000518721.6 upstream downstream duplicates(26),mismatches(4),multimappers(1) GAACAAGTGAACTAGGAAAGAGGGAACGCCAATCCAAGG___ATAGAAGGACAAGGACAGAATCACCAGCACTGGCTGAAG___GTACCTTAACATGGGGAATCTTCTTAAAGTTTTGACATGCACAGACCTTGAGCAGGGGCCAAATTTTTTCCTTGATTTTGAAA___ATGCCCAGCCTACAGAGTCTGAGAAGGAAATTTATAATCAGGTGAATGTAGTATTAAAAGATGCAGAAGGCATCTTGGAGGACTTGCAGTCATACAGAGGAGCTGGCCACGAAATACGAGAG|TCTAACAGGCAACCAGCCAAGTTGAACCTTCTCACCTGCCAAGTAAAACCTAATGCCGAAGACAAAAAATCTTTTGACCTGATATCAC___ATAATAGAACATATCACTTTCAGGCAGAAGATGAGCAGGATTATGTAGC___ATGGATATCAGTATTGACAAATAGCAAAGAAGAGGCC MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIRE|SNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-5194 chr8:130008334-130008453:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19607 CYRIB::ASAP1 ENSG00000153310.22::ENSG00000153317.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3377 TRUE 1275 CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129903312:- chr8:130851839-131029750:- chr8:130915558:- ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130137038:- chr8:131064350-131455920:- chr8:131149284:- chr8:129869175,chr8:129869179,chr8:129869181 chr8:130149231,chr8:130149232,chr8:130149232 NA NA chr8:130881421,chr8:130881425,chr8:130881427 chr8:131161477,chr8:131161478,chr8:131161478 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Ankyrin_repeats_(3_copies)(100%),PH_domain(60%),Putative_GTPase_activating_protein_for_Arf(100%),SH3_domain(100%) |Ank(100%),Ank_2(100%),ArfGap(100%),PH(28%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 0 10 1554 671 ENST00000703342.1 ENST00000518721.6 upstream downstream duplicates(2),low_entropy(1),mismatches(1) CTCGGCTTCTCGAAG___GAGAAGAAACTGAGGCCTGGAATTTGATTAACTCATTCAAGGTTACCCAGTTG___...AC?CCTGTTAGCAAGAAACAGAAGTTGAAGGACTGGAACAAGTGAACTAGGAAAGAGGGAACGCCAATCCAAGG___ATAGAAGGACAAGGACAGAATCACCAGCACTGGCTGAAG|TCTAACAGGCAACCAGCCAAGTTGAACCTTCTCACCTGCCAAGTAAAACCTAATGCCGAAGACAAAAAATCTTTTGACCTGATATCAC___ATAATAGAACATATCACTTTCAGGCAGAAGATGAGCAGGATTATGTAGC___ATGGATATCAGTATTGACAAATAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-5194 chr8:130008334-130008453:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19608 UBFD1::SCNN1B ENSG00000103353.16::ENSG00000168447.11 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1835 TRUE 3378 TRUE 1276 UBFD1 ENSG00000103353.16 protein_coding + + chr16:23557721-23574389:+ chr16:23562730:+ chr16:23569042-23585710:+ chr16:23574051:+ SCNN1B ENSG00000168447.11 protein_coding + + chr16:23278231-23381294:+ chr16:23348592:+ chr16:23289552-23392615:+ chr16:23359913:+ chr16:23565291,chr16:23565324,chr16:23565318 chr16:23330800,chr16:23330807,chr16:23330798 NA NA chr16:23576612,chr16:23576645,chr16:23576639 chr16:23342121,chr16:23342128,chr16:23342119 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ubiquitin_family(100%)|Amiloride-sensitive_sodium_channel(100%) Ubiquitin_2(100%),ubiquitin(100%)|ASC(100%) 27 31 53 500 454 ENST00000567212.5 ENST00000307331.9 downstream upstream duplicates(18),mismatches(1) ACACACCCAAAGATGCTGCGCAGCAGGATGCAAAGGCCGAAGAGAACAAGAAGGAGCCTCTCTGCAGGCAGAAA___CAACACAGGAAAGTGTTGGATAAAGGAAAACCTGAAGATGTGATGCCATCTGTTAAGGGGGCCCAG___GAGCGCCTGCCAACGGTACCGCTGTCCGGCATGTACAATAAATCTGGAGGAAAAGTGAGACTCACCTTTAAACTAGAACAAGACCAGCTGTGGATTGGCACTAAAG|GTGCCACTATGCACGTGAAGAAGTACCTGCTGAAGGGCCTGCATCGGCTGCAGAAGGGCCCCGGCTACACGTACAAGGAGCTGCTGGTGTGGTACTGCGACAACACCAACACCCACGGCCCCAAGCGCATCATCTGTGAGGGGCCCAAGAAGAAAGCCATGTGGTTCCTGCTCACCCTGCTCTTCGCCGCCCTCGTCTGCTGGCAGTGGGGCATCTTCATCAGGACCTACTTGAGCTGGGAGGTCAGCGTCTCCCTCTCCGTAGGCTTCAAGACCATGGACTTCCC TPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTK|gATMHVKKYLLKGLHRLQKGPGYTYKELLVWYCDNTNTHGPKRIICEGPKKKAMWFLLTLLFAALVCWQWGIFIRTYLSWEVSVSLSVGFKTMDF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19609 UBFD1::SCNN1B ENSG00000103353.16::ENSG00000168447.11 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3378 TRUE 1276 UBFD1 ENSG00000103353.16 protein_coding + + chr16:23557721-23574389:+ chr16:23564732:+ chr16:23569042-23585710:+ chr16:23576053:+ SCNN1B ENSG00000168447.11 protein_coding + + chr16:23278231-23381294:+ chr16:23348592:+ chr16:23289552-23392615:+ chr16:23359913:+ chr16:23565291,chr16:23565324,chr16:23565318 chr16:23330800,chr16:23330807,chr16:23330798 NA NA chr16:23576612,chr16:23576645,chr16:23576639 chr16:23342121,chr16:23342128,chr16:23342119 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none Ubiquitin_family(100%)|Amiloride-sensitive_sodium_channel(100%) Ubiquitin_2(100%),ubiquitin(100%)|ASC(100%) 2 1 58 25 454 ENST00000564106.1 ENST00000307331.9 downstream upstream duplicates(6),mismatches(2) ACTGCATGGTCAAAGCAAGTTTTGCAGAATATCTGAGGGTTCCCCCCAGTTTTTGCAAGGGCCTTTGAACCCTCTGCTAGATCATTCTCTTCTGTAGAGCC...AACTTTGCAGGTGATTTTGCTTAGTTCTGTCTCATCACATTCACTTGCTGAAGTGCATAGACTTCCTGCCTCTTGCTGGACCTCTACTTTTGCTTGTGGGCAGCCTCATTGAAGGCAGTTGCTACGGCTGACCTGGAAAGACCCTGCCATGAAGATAGGTGCAGGCAGAGAAGTCTGGATGGGAACTAAGTCT|GTGCCACTATGCACGTGAAGAAGTACCTGCTGAAGGGCCTGCATCGGCTGCAGAAGGGCCCCGGCTACACGTACAAGGAGCTGCTGGTGTGGTACTGCGACAACACCAACACCCACGGCCCCAAGCGCATCATCTGTGAGGGGCCCAAGAAGAAAGCCATGTGGTTCCTGCTCACCCTGCTCTTCGCCGCCCTCGTCTGCTGGCAGTGGGGCATCTTCATCAGGACCTACTTGAGCTGGGAGGTCAGCGTCTCCCTCTCCGTAGGCTTCAAGACCATGGACTTCCCTGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19610 LINC02774::VANGL2 ENSG00000226828.2::ENSG00000162738.7 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1836 FALSE NA FALSE NA LINC02774 ENSG00000226828.2 lncRNA + + chr1:243917402-244047317:+ chr1:243917526:+ chr1:244080704-244210619:+ chr1:244080828:+ VANGL2 ENSG00000162738.7 protein_coding + + chr1:160400564-160428670:+ chr1:160415648:+ chr1:160370354-160398460:+ chr1:160385438:+ chr1:243947832,chr1:243947825,chr1:243947805,chr1:243947822,chr1:243947814,chr1:243947821,chr1:243947815,chr1:243947832,chr1:243947832,chr1:243947830,chr1:243947825,chr1:243947831,chr1:243947830 chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412073,chr1:160412074,chr1:160412064,chr1:160412064,chr1:160412067,chr1:160412067 NA NA chr1:244111134,chr1:244111127,chr1:244111107,chr1:244111124,chr1:244111116,chr1:244111123,chr1:244111117,chr1:244111134,chr1:244111134,chr1:244111132,chr1:244111127,chr1:244111133,chr1:244111132 chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381863,chr1:160381864,chr1:160381854,chr1:160381854,chr1:160381857,chr1:160381857 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Strabismus_protein(100%) |Strabismus(100%) 16 28 38 85 316 ENST00000440494.1 ENST00000696602.1 downstream upstream duplicates(13),mismatches(5) CGGCGTCCCGCGGGCCCCCGAGGCCGGGGAGCTCCGCCAGCGCATTGTGCGAGCGAGCTGAATGCAGCCGAGGGGCGAGCGCGCGGGCTCGCACGGATTAGCCGTGCTTTCCCATGAGCCACAAAAGAATGCCCGAATCTGGGACATCTGTCATCAAGGGGCAGGCTGCTCAGGATGCAAG|GAGCGTCGCTGGATTTTCTCTGAGACAAGCCCACCCGTCCAGCAAAATAGAGTCCCTCAGGGTGACAGTTGACTTCCTGAAGGTGCCTCTTGGCCTAAAGAAGCCGGTGCTGAAGGAGGTGGCTGTGGGGCCCCCCAAGAGGCCCCAGCCTGCGGCCCTGGAGCGCTACAAGGCGCGGCGTTCAGACGCCATGGACACCGAGTCCCAGTACTCGGGCTATTCCTACAAGTCGGGCCACTCCCGCAGCTCCCGCAAGCACAG___GGACCGCCGGGACCGACACCGCTCTAAGAGTCGAGATGGGGGCCGAGGGGACAAGTCGGTGACAATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19612 PABPN1::CHD8 ENSG00000100836.11::ENSG00000100888.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1837 FALSE NA FALSE NA PABPN1 ENSG00000100836.11 protein_coding + + chr14:23321457-23326163:+ chr14:23323066:+ chr14:23790666-23795372:+ chr14:23792275:+ CHD8 ENSG00000100888.15 protein_coding - - chr14:21385194-21456126:- chr14:21428254:- chr14:21853353-21924285:- chr14:21896413:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(7%)|BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) RRM_1(1%)|BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 15 19 36 3760 336 ENST00000216727.9 ENST00000646647.2 downstream downstream duplicates(8),mismatches(4) GGCGCCATTGAGGACCCG___GAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTGAGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATG___CTGGCCCaGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAAT|GCTGGCTCTTCCCAAGGGGCCTCTTCTGGGCTCTCTGTAGTTAAAGTTCTGAGTGCCAGTGAAGTGGCAGCTTTGTCATCACCAGCAAGCTCTGCTCCTCATTCGGGGGGAAAGACAGGAATGGAGGAAAACCGCAGATTGGAACACCAGAAaAAGCAAGAGAAAGCAAATCGGATTGTAGCAGAGGCCATTGCGAGAGCCCGTGCCCGCGGTGAGCAaAACATACCTCGAGTCTTAAATGAGGACGAGTTGCCCAGCGTTCGGCCAGAGGAGGAAGGCGAGAAGAAACGCAGG GAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGN|AGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19613 BCL2L2-PABPN1::CHD8 ENSG00000258643.6::ENSG00000100888.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BCL2L2-PABPN1 ENSG00000258643.6 protein_coding + + chr14:23306833-23326175:+ chr14:23323066:+ chr14:23776042-23795384:+ chr14:23792275:+ CHD8 ENSG00000100888.15 protein_coding - - chr14:21385194-21456126:- chr14:21428254:- chr14:21853353-21924285:- chr14:21896413:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Apoptosis_regulator_proteins__Bcl-2_family(100%),Bcl-2_homology_region_4(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(7%)|BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) BH4(100%),Bcl-2(100%),RRM_1(1%)|BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 6 19 26 3760 336 ENST00000678502.1 ENST00000646647.2 downstream downstream duplicates(5),mismatches(2) AGGGAGATGGAGGAAGAAGCTGAGAAGCTAAAGGAGCTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATG___CTGGCCCaGTGATCATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAAT|GCTGGCTCTTCCCAAGGGGCCTCTTCTGGGCTCTCTGTAGTTAAAGTTCTGAGTGCCAGTGAAGTGGCAGCTTTGTCATCACCAGCAAGCTCTGCTCCTCATTCGGGGGGAAAGACAGGAATGGAGGAAAACCGCAGATTGGAACACCAGAAaAAGCAAGAGAAAGCAAATCGGATTGTAGCAGAGGCCATTGCGAGAGCCCGTGCCCGCGGTGAGCAaAACATACCTCGAGTCTTAAATGAGGACGAGTTGCCCAGCGTTCGGCCAGAGGAGGAAGGCGAGAAGAAACGCAGGA REMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGN|AGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19614 CDK12::FBXL20 ENSG00000167258.16::ENSG00000108306.13 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39471763:+ chr17:37617739-37723812:+ chr17:37628016:+ FBXL20 ENSG00000108306.13 protein_coding - + chr17:39252663-39402523:- chr17:39335826:+ chr17:37408916-37558776:- chr17:37492079:+ chr17:39472452 chr17:39335202 NA NA chr17:37628705 chr17:37491455 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 10 5 23 453 64 ENST00000559663.2 unknown downstream upstream duplicates(6),mismatches(1) GCCTCCTTCTCAGCCAGCATTTAGTCAGGTTCCTGCTTCCAGTACTTCAACTTTGCCCCCTTCTACTCACTCAAAGACATCTGCTGTGTCCTCTCAGGCAAATTCTCAGCCCCCTGTACAGGTTTCTGTGAAGACTCAAGTATCTGTAACAGCTGCTATTCCACACCTGAAAACTTCAACGTTGCCTCCTTTGCCCCTCCCACCCTTATTACCTGGAGATGATGACATGGATAG|GGAAGGAAGAGAATCAGTATAAAAGGGGAAACAGGCTGGGTGCAGTGGCTCATGCCTGTAATCCTAATACTTCGTGAGGCTAAGGGGAGAGAATTGCTTGAGGCCAGAAGTACAAAACCAGCCTGGTCAACAAAGTGAGTCCCCATCTCTACAAAAGAAAACAACATGCGTGTAGTCCCAGCTACTCAGGAGCTGAGGAAGAGGATCAATCGTTTAGGCCCAGGAGTTTGGGACTGCCATTATCATCCCACCGTATTCCAGCCTAGGCAACAGAGTGAGA PPSQPAFSQVPASSTSTLPPSTHSKTSAVSSQANSQPPVQVSVKTQVSVTAAIPHLKTSTLPPLPLPPLLPGDDDMDr|egresv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 19615 COPA::PPIEL ENSG00000122218.17::ENSG00000291129.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3379 TRUE 1277 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160305433:- chr1:160258384-160313356:- chr1:160275223:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39522505:- chr1:39987952-40025370:- chr1:39988177:- chr1:160302608 chr1:39523006 NA NA chr1:160272398 chr1:39988678 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_WD_associated_region_(51%),WD_domain__G-beta_repeat(100%)| ANAPC4_WD40(100%),Coatomer_WDAD(41%),WD40(100%)| 10 6 14 1527 323 ENST00000241704.8 ENST00000692918.1 upstream downstream duplicates(10),mismatches(14) GATGCATTCG___CTTCTGATCAAGAATCTGAAGAATGAGATCACCAAAAAGGTACAGGTGCCCAACTGTGATGAGATCTTCTATGCTGGCACAGGCAATCTCCTGCTTCGAGATGCGGACTCTATCACACTCTTTGACGTACAGCAGAAGCG___GACTCTGGCATCTGTGAAGATTTCTAAAGTGAAATACGTTATCTGGTCAGCAGACATGTCACATGTAGCACTACTAGCCAAACACG___CCATTGTGATCTGTAACCGCAAACTGGATGCTTTATGTAACATTCATGAGAACATTCGTGTCAAGAGTGGGGCCTGGGATGAGAGTGGGGTATTTATCTATACCACAAGCAACCACATCAAATATGCTGTCACCACTGG|AAACAAGGAGAGTCAGCAATTACCAGCCAGCCgAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGCGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTGCTGTGTGCAGCTACTATGGGGTACCAGGGTGGGGGATGCCCTGATGAGC MHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQKRTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTg|nkesqqlpasrgpgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19616 COPA::PPIEL ENSG00000122218.17::ENSG00000291129.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3379 TRUE 1277 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160305433:- chr1:160258384-160313356:- chr1:160275223:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39522543:- chr1:39987952-40025370:- chr1:39988215:- chr1:160302608 chr1:39523006 NA NA chr1:160272398 chr1:39988678 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Anaphase-promoting_complex_subunit_4_WD40_domain(100%),Coatomer_WD_associated_region_(51%),WD_domain__G-beta_repeat(100%)| ANAPC4_WD40(100%),Coatomer_WDAD(41%),WD40(100%)| 3 1 14 1527 189 ENST00000241704.8 ENST00000702110.1 upstream downstream duplicates(7),mismatches(5) GACTCTGGCATCTGTGAAGATTTCTAAAGTGAAATACGTTATCTGGTCAGCAGACATGTCACATGTAGCACTACTAGCCAAACACG___CCATTGTGATCTGTAACCGCAAACTGGATGCTTTATGTAACATTCATGAGAACATTCGTGTCAAGAGTGGGGCCTGGGATGAGAGTGGGGTATTTATCTATACCACAAGCAACCACATCAAATATGCTGTCACCACTGG|ATTCACTTCTGATCTACAGGTGGTGATTGTCATTTCAGAAACAAGGAGAGTCAGCAATTACCAGCCAGCCgAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGCGGACGTCATCTGCAGGGACAGAAGGGGCAAGGTCTTTTCTGGGGTTCCTGCTGTGTGCAGCTACTATGGGGTACCAGGGTGGGGGATGCCCTGATGAGCA TLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTg|ftsdlqvvivisetrrvsnyqpaevleadvelvptadlpavgaadvicrdrrgkvfsgvpavcsyygvpgwgmp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19617 COPA::PPIEL ENSG00000122218.17::ENSG00000291129.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3379 TRUE 1277 COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160332448:- chr1:160258384-160313356:- chr1:160302238:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39529164:- chr1:39987952-40025370:- chr1:39994836:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none WD_domain__G-beta_repeat(100%)| WD40(68%)| 0 1 0 1675 281 ENST00000241704.8 ENST00000692918.1 upstream downstream none CCAGCCTGGACCAGACTGTGCGCGTTTGGGATATTTCTG|GTCTGCGCAGGCATGGCACTAAGTGTCCCATGGCACATTTGGCCCTCATGGAGGCCTCAAAA...AGGAGAGTCAGCAATTACCAGCCAGCCAAGGTCCTGGAAGCTGACGTAGAGCTCGTGCCGACGGCAGACCTGCCGGCCGTGGGAGCCGtGGACGTCATCTG SLDQTVRVWDIS|glrrhgtkcpmahlalmeas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19618 ANKRD28::ENSG00000287042 ENSG00000206560.12::ENSG00000287042.3 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- ENSG00000287042 ENSG00000287042.3 lncRNA + - chr3:15860112-16137529:+ chr3:16051862:- chr3:15901619-16179036:+ chr3:16093369:- chr3:15797248,chr3:15797250 chr3:16054713,chr3:16054712 NA NA chr3:15838755,chr3:15838757 chr3:16096220,chr3:16096219 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 14 14 88 58 ENST00000399451.6 unknown upstream downstream duplicates(9),mismatches(1) GGGGAGGCGGCGCCGCCCCCTGCCCGC-GGTCTTCTCAGCGCAGTCGGCCGCGGACCCGCTGGTCCCGGGCAGCGGCCAAGGCTACTGGGGCGGGAGCAGTGGGCCGGgCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGCGACCGCCATGGCGTTCCTCAAACTCCGTGACCAG|ACTGTCATTCCAGACCATTACAGAGTGAAGAGAAGTTATTCTATTTTTAAGGACCGCCAAAGTAGATTCCACTGTCTTCACAACCTATTCTGGTGTCTACGAGCTCTCAGCATTGGCAAGTTTTCCTTGGGATCTAACAAAATTCTGTCCATAGAAGCTCAGGCCAGCCAGCCAGCCATGGGAGCCAGAGAAAACTTCCACCACCCCAGATAAAATCTACCTCAGATTTTCAAGATGGTCCGTAAACCcCTGG MAFLKLRDQ|tvipdhyrvkrsysifkdrqsrfhclhnlfwclralsigkfslgsnkilsieaqasqpamgarenfhhpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19620 MFSD2A::ATF6 ENSG00000168389.18::ENSG00000118217.7 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3380 TRUE 1278 MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39966014:+ chr1:40420784-40435640:+ chr1:40431686:+ ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161819633:+ chr1:161736088-161947364:+ chr1:161789423:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none MFS/sugar_transport_protein(44%)|bZIP_transcription_factor(100%) MFS_2(76%)|bZIP_1(100%),bZIP_2(100%) 0 3 3 2963 261 ENST00000420632.6 ENST00000681738.1 downstream upstream duplicates(3) CTCAATAGCTCTACAGTAGCTTCACAAAGTGCCAACCATACACATGGCACCACCTCACACAGGGAAACG|ATTGCTGTGCTAAGGAGACAGCAACGTATGATAAAAAATCGAGAATCCGCTTGTCAGTCTCGCAAGAAGAAGAAAGAATATATGCTAGGGTTAGAGGCGAGATTAAAGGCTGCCCTCTCAGAAAACGAGCAACTGAAGAAAGAAAATGGAACACTGAAGCGGCAGCTGGATGAAGTTGTGTCAGAG___AACCAGAGGCTTAAAGTCCCTAGTCCAAAGCGAAG LNSSTVASQSANHTHGTTSHRET|IAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKENGTLKRQLDEVVSENQRLKVPSPKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19621 MFSD2A::ATF6 ENSG00000168389.18::ENSG00000118217.7 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3380 TRUE 1278 MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39955385:+ chr1:40420784-40435640:+ chr1:40421057:+ ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161819633:+ chr1:161736088-161947364:+ chr1:161789423:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%) 1 0 2 3032 261 ENST00000372811.10 ENST00000681738.1 downstream upstream duplicates(1) TGCGTTCCTCGTCTGCCAGCCGGCTTGGCTAGCGCGCGGCGGCCGTGGCTAAGGCTGCTACGAAGCGAGCTTGGGgGGgGgAGCGGCCTGCGGGGCcGAGG...CGTCTACCAGGTCCCAAGCGGCGTGGCCCGCGGGTCATGGCCAAAGGAGAAGGCGCCGAGAGCGGCTCCGCGGCGGGGCTGCTACCCACCcGCATCCTCCAAAGCACTGAACGCCCGGCCCAGGTGAAG|ATTGCTGTGCTAAGGAGACAGCAACGTATGATAAAAAATCGAGAATCCGCTTGTCAGTCTCGCAAGAAGAAGAAAGAATATATGCTAGGGTTAGAGGCGAGATTAAAGGCTGCCCTCTCAGAAAACGAGCAACTGAAGAAAGAAAATGGAACACTGAAGCGGCAGCTGGATGAAGTTGTGTCAGAG___AACCAGAGGCTTAAAGTCCCTAGTCCAAAGCGAAG MAKGEGAESGSAAGLLPTrILQSTERPAQVK|IAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKENGTLKRQLDEVVSENQRLKVPSPKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19622 MFSD2A::ATF6 ENSG00000168389.18::ENSG00000118217.7 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3380 TRUE 1278 MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39957221:+ chr1:40420784-40435640:+ chr1:40422893:+ ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161819633:+ chr1:161736088-161947364:+ chr1:161789423:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none MFS/sugar_transport_protein(6%)|bZIP_transcription_factor(100%) MFS_2(0%)|bZIP_1(100%),bZIP_2(100%) 0 1 2 3142 261 ENST00000372809.5 ENST00000681738.1 downstream upstream duplicates(2) GGGGAGCCCCCTACCAGGTGACGGGCTGTGCCCTGGGTTTCTTCCTTCAGATCTACCTATTGGATGTGGCTCAG|ATTGCTGTGCTAAGGAGACAGCAACGT...GCAAGAAGAAGAAAGAATATATGCTAGGGTTAGAGGCGAGATTAAAGGCTGCCCTCTCAGAAAACGAGCAACTGAAGAAAGAAAATGGAACACTGAAGCGGCAGCTGGATGAAGTTGTGTCAGAG___AACCAGAGGCTTAAAGTCCCTAGTCCAAAGCGAAG...ATGATAGTATTGGCATTTATAATACTGAACTATGGACCTATGAG___CATGTTGGAACAGGATTCCAGGAGAATGAACCCTAGTGTGAGCCCTGCAAATCAAAG GAPYQVTGCALGFFLQIYLLDVAQ|IAVLRRQQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19623 MGST3::PBX1 ENSG00000143198.13::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1838 TRUE 3381 TRUE 1279 MGST3 ENSG00000143198.13 protein_coding + + chr1:165631213-165661796:+ chr1:165631293:+ chr1:165600450-165631033:+ chr1:165600530:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164792494:+ chr1:164524821-164868533:+ chr1:164761731:+ chr1:165631441,chr1:165631441 chr1:164643716,chr1:164643713 NA NA chr1:165600678,chr1:165600678 chr1:164612953,chr1:164612950 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Homeodomain(100%),PBC_domain(74%) |Homeobox_KN(100%),Homeodomain(100%),PBC(3%) 7 19 0 1654 159 ENST00000367888.8 ENST00000699845.1 downstream upstream duplicates(6),mismatches(2) TCGCTGGACGACCATGAGCAGGAAGAAAATTAGGCCTCCACCTCCCAACCAGTGGCCCTGAGTTGGCAACTTAGACAGCGCGCGCCAGCGCCAGGAGCCCCGCCTTGGGGGCGTGGCCGCGCGCTGGTCGGCTGGGGCcGGGCCTtCcTCTGGCCTCATCTAGCCCCGCCCCAGGCGAGGGCGCCGCACCCACACCGCGCTGCGCAGTTTTGTTCTGCTCCAGCTGTTCGAAGGTGATCCAG|TTTTGAGTATCCGAGGAGCCCAGGAGGAGGAACCCACAGACCCCCAGCTGATGCGGCTGGACAACATGCTGTTAGCGGAAGGCGTGGCGGGGCCTGAGAAGGGCGGAGGGTCGGCGGCAGCGGCGGCAGCGGCGGCGGCTTCTGGAGGGGCAGGTTCAGACAACTCAGTGGAGCATTCAGATTACAGAGCCAAACTCTCACAGATCAGACAAATCTACCATACGGAGCTGGAGAAATACGAGCAG___GCCTGCAACGAGTTCACCACCCACGTGATGAATCTCCTGCGAGAGCAAAGCCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 19624 MGST3::PBX1 ENSG00000143198.13::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3381 TRUE 1279 MGST3 ENSG00000143198.13 protein_coding + + chr1:165631213-165661796:+ chr1:165631293:+ chr1:165600450-165631033:+ chr1:165600530:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164682310:+ chr1:164524821-164868533:+ chr1:164651547:+ chr1:165631441,chr1:165631441 chr1:164643716,chr1:164643713 NA NA chr1:165600678,chr1:165600678 chr1:164612953,chr1:164612950 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none |Homeodomain(100%),PBC_domain(74%) |Homeobox_KN(100%),Homeodomain(100%),PBC(49%) 0 2 0 1654 6 ENST00000367888.8 ENST00000474046.1 downstream upstream mismatches(1) GCCAGCGCCAGGAGCCCCGCCTTGGGGGCGTGGCCGCGCGCTGGTCGGCTGGGGCcGGGCCTtCcTCTGGCCTCATCcAagCCCGgCCCcGGCGAGGGgGCCGCACCCACACCGCGCTGCGCAGTTTTGTTCTGCTCCAGCTGTTCGAAGGTGATCCAG|GTATTTCGAAAAAAGCCTGGTTTTGGTACAGCTCTTCCAGAACCCACGGGAAGAACCTGTTCATCAGCTCATCCATCCGTCTGCTGAGTAAATGCTTATTGAGCATCTACTGAATGCCAGCACTGTTCTTTGTTCTTGGAATACATCAGTAAACAAAATAAGaAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 19629 PPOX::LRRC52 ENSG00000143224.18::ENSG00000162763.4 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1840 TRUE 3383 TRUE 1280 PPOX ENSG00000143224.18 protein_coding + + chr1:161166056-161178013:+ chr1:161167234:+ chr1:161135846-161147803:+ chr1:161137024:+ LRRC52 ENSG00000162763.4 protein_coding + + chr1:165544000-165563957:+ chr1:165563505:+ chr1:165513237-165533194:+ chr1:165532742:+ chr1:161168567,chr1:161168568 chr1:165563162,chr1:165563157 NA NA chr1:161138357,chr1:161138358 chr1:165532399,chr1:165532394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Flavin_containing_amine_oxidoreductase(13%)| Amino_oxidase(8%),DAO(100%),NAD_binding_8(100%)| 6 8 10 231 66 ENST00000497522.5 ENST00000294818.2 downstream upstream duplicates(6),low_entropy(2),mismatches(7) CGGGGTACGGTCTTAGGACCTCGATCTCCTTCTCCCTCATTTTCTCTCATCCCTACCTATTGTGG___GTTTCCGCATGGGCCGGACCGTGGTCGTGCTGGGCGGAGGCATCAGCGGCTTGGCCGCCAGTTACCACCTGAGCCGGGCCCCCTGCCCCCCTAAG___GTGGTCCTAGTGGAGAGCAGTGAGCGTCTGGGAGGCTGGATTCGCTCCGTTCGAGGCCCTAATGGTGCTATCTTTGAGCTTGGACCTCGGGGAATTAGGCCAGCGGGAGCCCTAGGGGCCCGGACCTTGCTCCTG|ATGATCTAAATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGCCGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAAC?CCCGCCACAAGTCGAGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCaGGCGGATTTTTCAAACCCAGACGAGCTCGGTCCAGG MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLL|mi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19630 PPOX::LRRC52 ENSG00000143224.18::ENSG00000162763.4 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3383 TRUE 1280 PPOX ENSG00000143224.18 protein_coding + + chr1:161166056-161178013:+ chr1:161167486:+ chr1:161135846-161147803:+ chr1:161137276:+ LRRC52 ENSG00000162763.4 protein_coding + + chr1:165544000-165563957:+ chr1:165563505:+ chr1:165513237-165533194:+ chr1:165532742:+ chr1:161168567,chr1:161168568 chr1:165563162,chr1:165563157 NA NA chr1:161138357,chr1:161138358 chr1:165532399,chr1:165532394 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none Flavin_containing_amine_oxidoreductase(22%)| Amino_oxidase(14%),DAO(100%),NAD_binding_8(100%)| 2 1 13 158 66 ENST00000479246.5 ENST00000294818.2 downstream upstream duplicates(2),mismatches(2) TGAGCGTCTGGGAGGCTGGATTCGCTCCGTTCGAGGCCCTAATGGTGCTATCTTTGAGCTTGGACCTCGGGGAATTAGGCCAGCGGGAGCCCTAGGGGCCC...ATTGGGGAATAGAGTTTAGGGGAGGAAGTATGTTTGGTGGGTCAGATCTTCCCTTAGTTTCTCCTCTTCTGAGGGCATGTGGAGAGCAGGTTTCTGAGCTTGGCTTGGATTCAGAAGTGCTGCCTGTCCGGGGAGACCACCCAGCTGCCCAGAACAGGTTCCTCTACGTGGGCGGTGCCCTGCATGCCCTACCCACTGGCCTCAG|ATGATCTAAATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGCCGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAAC?CCCGCCACAAGTCGAGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCaGGCGGATTTTTCAAACCCAGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19631 PPOX::LRRC52 ENSG00000143224.18::ENSG00000162763.4 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3383 TRUE 1280 PPOX ENSG00000143224.18 protein_coding + + chr1:161166056-161178013:+ chr1:161166934:+ chr1:161135846-161147803:+ chr1:161136724:+ LRRC52 ENSG00000162763.4 protein_coding + + chr1:165544000-165563957:+ chr1:165563505:+ chr1:165513237-165533194:+ chr1:165532742:+ chr1:161168567,chr1:161168568 chr1:165563162,chr1:165563157 NA NA chr1:161138357,chr1:161138358 chr1:165532399,chr1:165532394 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Flavin_containing_amine_oxidoreductase(3%)| Amino_oxidase(1%),DAO(27%),NAD_binding_8(20%)| 0 2 8 273 66 ENST00000497522.5 ENST00000294818.2 downstream upstream duplicates(1),mismatches(2) CGCCGCCCGAGCCCTGCGAGGGCCGATAGCGAGGGTGTGGCCCTTATCTGCACCCAGCAGAGCGCCGGCGGG___...GTCTTAGGACCTCGATCTCCTTCTCCCTCATTTTCTCTCATCCCTACCTATTGTGG___GTTTCCGCATGGGCCGGACCGTGGTCGTGCTGGGCGGAGGCATCAGCGGCTTGGCCGCCAGTTACCACCTGAGCCGGGCCCCCTGCCCCCCTAAG|ATGATCTAAATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGCCGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAAC?CCCGCCACAAGTCGAGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCaGGCGGATTTTTCAAACCCAGACGAGCTCGGTCCAGG MGRTVVVLGGGISGLAASYHLSRAPCPPK|mi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19637 UNC80::MAP2 ENSG00000144406.19::ENSG00000078018.22 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1841 TRUE 3385 TRUE 1281 UNC80 ENSG00000144406.19 protein_coding + + chr2:209771832-209999300:+ chr2:209881094:+ chr2:210636556-210864024:+ chr2:210745818:+ MAP2 ENSG00000078018.22 protein_coding + + chr2:209424047-209734147:+ chr2:209692625:+ chr2:210288771-210598871:+ chr2:210557349:+ chr2:209887169 chr2:209692084 NA NA chr2:210751893 chr2:210556808 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none UNC80_N-terminal(100%)|MAP2/Tau_projection_domain(100%),Tau_and_MAP_protein__tubulin-binding_repeat(100%) UNC80(44%),UNC80_N(100%)|MAP2_projctn(100%),Tubulin-binding(100%) 6 10 4 74 317 ENST00000673920.1 ENST00000704357.1 downstream upstream duplicates(4) GTGGGCAACAAGCGAAACCAGAAGCTGCAGTGGAATGCAGCCAAGCTCTTCTACCAATGGGGAGAC___GCAATTGGCGTCCGATTGAATGAGCTGTGCCACGGGGAAAGTGAGAGCCCAGCCAACCTGCTGGGTCTCATTTACGATGAAGAGACCAAGAGGAGACTTAGAAAGGAGGATGAGGAGGAAGACTTTTTAGATGACA___GTACTGTGAACCCCTCTAAATGCGGTTGCCCCTTTGCCTTGAAGATGGCAGCATGTCAGCTTCTTCTGGAGATTACCACCTTCCTGCGAGAGACCTTTTCTTGCCTGCCCAGACCTCGCACTGAGCCTCTGGTG|ATTTACTTACAGCCTCGAAGATGGAGTTCCACGATCAACAGGAATTGACTCCCTCTACAGCTGAGCCTTCAGACCAGAAGGAAAAGGAGTCAGAGAAGCAAAGTAAGCCTGGTGAAGACCTTAAACATGCTGCCTTAGTTTCTCAGCCAGAGACAACTAAAACTTACCCTGATAAAAAGGACATGCAAGGCACGGAAGAAGAAAAAGCACCCCTAGCTTTGTTTGGGCACACTCTTGTTGCCAGCCTGGAAGACATGAAACAGAAGACAGAA VGNKRNQKLQWNAAKLFYQWGDAIGVRLNELCHGESESPANLLGLIYDEETKRRLRKEDEEEDFLDDSTVNPSKCGCPFALKMAACQLLLEITTFLRETFSCLPRPRTEPLV|iylqprrwsstinrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19638 UNC80::MAP2 ENSG00000144406.19::ENSG00000078018.22 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3385 TRUE 1281 UNC80 ENSG00000144406.19 protein_coding + + chr2:209771832-209999300:+ chr2:209881094:+ chr2:210636556-210864024:+ chr2:210745818:+ MAP2 ENSG00000078018.22 protein_coding + + chr2:209424047-209734147:+ chr2:209692637:+ chr2:210288771-210598871:+ chr2:210557361:+ chr2:209887169 chr2:209692084 NA NA chr2:210751893 chr2:210556808 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none UNC80_N-terminal(100%)|MAP2/Tau_projection_domain(100%),Tau_and_MAP_protein__tubulin-binding_repeat(100%) UNC80(44%),UNC80_N(100%)|MAP2_projctn(100%),Tubulin-binding(100%) 1 4 4 74 317 ENST00000673920.1 ENST00000447185.5 downstream upstream duplicates(1),mismatches(1) CAACTGGCCAGAGTGGAgGAAAGGGCACCACGTGAACcTCACCAAGAAAGGACTTTCCCGGGGACGCgCTCCCATTGTGGGCAACAAGCGAAACCAGAAGC...GTGAGAGCCCAGCCAACCTGCTGGGTCTCATTTACGATGAAGAGACCAAGAGGAGACTTAGAAAGGAGGATGAGGAGGAAGACTTTTTAGATGACA___GTACTGTGAACCCCTCTAAATGCGGTTGCCCCTTTGCCTTGAAGATGGCAGCATGTCAGCTTCTTCTGGAGATTACCACCTTCCTGCGAGAGACCTTTTCTTGCCTGCCCAGACCTCGCACTGAGCCTCTGGTG|CCTCGAAGATGGAGTTCCACGATCAACAGGAATTGACTCCCTCTACAGCTGAGCCTTCAGACCAGAAGGAAAAGGAGTCAGAGAAGCAAAGTAAGCCTGGTGAAGACCTTAAACATGCTGCCTTAGTTTCTCAGCCAGAGACAACTAAAACTTACCCTGATAAAAAGGACATGCAAGGCACGGAAGAAGAAAAAGCACCCCTAGCTTTGTTTGGGCACACTCTTGTTGCCAGCCTGGAAGACATGAAACAGAAGACAGAACCAAGCCTTGTAGTACCTGGCATTGACCTCCCTAAAGAGCCTCCAACTCCAAAAGAACAAAAGGACTGGTTCATCGAAATGCCAACGGAAGCAAAAAAGGATG ESPANLLGLIYDEETKRRLRKEDEEEDFLDDSTVNPSKCGCPFALKMAACQLLLEITTFLRETFSCLPRPRTEPLV|prrwsstinrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19639 UNC80::MAP2 ENSG00000144406.19::ENSG00000078018.22 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3385 TRUE 1281 UNC80 ENSG00000144406.19 protein_coding + + chr2:209771832-209999300:+ chr2:209878089:+ chr2:210636556-210864024:+ chr2:210742813:+ MAP2 ENSG00000078018.22 protein_coding + + chr2:209424047-209734147:+ chr2:209692637:+ chr2:210288771-210598871:+ chr2:210557361:+ chr2:209887169 chr2:209692084 NA NA chr2:210751893 chr2:210556808 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none UNC80_N-terminal(100%)|MAP2/Tau_projection_domain(100%),Tau_and_MAP_protein__tubulin-binding_repeat(100%) UNC80(42%),UNC80_N(100%)|MAP2_projctn(100%),Tubulin-binding(100%) 0 1 0 117 317 ENST00000673920.1 ENST00000447185.5 downstream upstream none GGAAGACTTTTTAGATGACA|CCTCGAAGATGGAGTTCCACGATCAACAGGAATTGACTCCCTCTACAGCTGAGCCTTCAGACCAGAAGGAAAAGGAGTCAG...AAAGGACTGGTTCATCGAAATGCCAACGGAAGCAAAAAAGGATGAGTGGGGTTTAGTTGCCCCCATATCTCCTGGCCCTCTGACTCCCATGAGGGAAAAAG EDFLDD|tSKMEFHDQQELTPSTAEPSDQKEKES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19640 UNC80::MAP2 ENSG00000144406.19::ENSG00000078018.22 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3385 TRUE 1281 UNC80 ENSG00000144406.19 protein_coding + + chr2:209771832-209999300:+ chr2:209881094:+ chr2:210636556-210864024:+ chr2:210745818:+ MAP2 ENSG00000078018.22 protein_coding + + chr2:209424047-209734147:+ chr2:209704450:+ chr2:210288771-210598871:+ chr2:210569174:+ chr2:209887169 chr2:209692084 NA NA chr2:210751893 chr2:210556808 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none UNC80_N-terminal(100%)|Tau_and_MAP_protein__tubulin-binding_repeat(100%) UNC80(44%),UNC80_N(100%)|Tubulin-binding(100%) 1 0 0 74 173 ENST00000673920.1 ENST00000199940.10 downstream upstream none CTTAGAAAGGAGGATGAGGAGGAAGACTTTTTAGATGACA___GTACTGTGAACCCCTCTAAATGCGGTTGCCCCTTTGCCTTGAAGATGGCAGCATGTCAGCT...TTCTTGCCTGCCCAGACCTCGCACTGAGCCTCTGGTG|AATTCTACCTTGTCAAAGATTCCTGCTTTACAGGGTAGCACAAAGTCCCCAAGATACAGCTCAG SCLPRPRTEPLV|NSTLSKIPALQGSTKSPRYSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19641 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623913:- chr3:17198654-18486309:- chr3:17665405:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 3 7 8 88 98 ENST00000399451.6 ENST00000696125.1 upstream downstream duplicates(4),mismatches(3) GGCGGCGCCGCCCCCTGCCCGC-GGTCTTCTCAGCGCAGTCGGCCGCGGACCCGCTGGTCCCGGGCAGCGGCCAAGGCTACTGGGGCGGGAGCAGTGGGCCGGgCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGCGACCGCCATGGCGTTCCTCAAACTCCGTGACCAG|TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT___GTAGTTACTTTTGGTGACGCTGTCCAGTTCCCACAATGTATCATTCCTTATCTGAAACTAGACATCCTCTGCAGCCAGAAGAACAAGAAGTAGGCATTGACCCCTTGTCCAGTTACTCTAACAAGTCTGGAG___GAGATTCAAATAAAAATGGAAGAAGAACAAGTTCTACTTTAGACT MAFLKLRDQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19642 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15814240:- chr3:15708743-15901278:- chr3:15855747:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623913:- chr3:17198654-18486309:- chr3:17665405:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense stop-codon 3'UTR/splice-site 5'UTR/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 0 4 8 18 98 ENST00000439830.5 ENST00000696125.1 upstream downstream duplicates(2),mismatches(3),multimappers(1) CAG___GCCTGTGATTGGAATTGAAACAGTACAACTGCCTCCACCAGAGGAAAATAGTATGGGAATTCCTATTATG|TGATATCAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT___GTAGTTACTTTTGGTGACGCTGTCCAGTTCCCACAATGTATCATTCCTTATCTGAAACTAGACATCCTCTGCAGCCAGAAGAACAAGAAGTAGGCATTGACCCCTTGTCCAGTTACTCTAACAAGTCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19643 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17647056:- chr3:17198654-18486309:- chr3:17688548:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 0 1 8 88 1 ENST00000399451.6 ENST00000480435.5 upstream downstream duplicates(2),mismatches(3) GGCGGCGCCGCCCCCTGCCCGC-GGTCTTCTCAGCGCAGTCGGCCGCGGACCCGCTGGTCCCGGGCAGCGGCCAAGGCTACTGGGGCGGGAGCAGTGGGCCGGgCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGgGACCGCCATGGCGTTCCTCAAACTCCGTGACCAG|TTTTGGAGTCCAGAACATGTAAAGTTTTTTCACCCATTATAAACAATTTGGACAAAATgCTGCATGTTC...CAGTATCAAGATAAAAGTTTGGAATGGGAGAAAAATTCTCAAAGCCTGAAAGAAAATCT___GTAGTTACTTTTGGTGACGCTGTCCAGTTCCCtCAATGTATC MAFLKLRDQ|fwspehvkffhpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19644 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17562142:- chr3:17198654-18486309:- chr3:17603634:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 0 2 5 88 19 ENST00000399451.6 ENST00000452492.6 upstream downstream duplicates(1),mismatches(3) CGGCGCCGCCCCCTGCCCGC-GGTCTTCTCAGCGCAGTCGGCCGCGGACCCGCTGGTCCCGGGCAGCGGCCAAGGCTACTGGGGCGGGAGCAGTGGGCCGGgCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGCGACCGCCATGGCGTTCCTCAAACTCCGTGACCAG|AGATGGGGTCTCACTCTGTCATCCAGGCTGGAATATAGTGGCACAATCATAGCCCATTGTAGCCTCCATC...CAGAAGAACAAGAAGTAGGCATTGACCCCTTGTCCAGTTACTCTAACAAGTCTGGAG___GAAAGAATGGGAAGAACTATTTGTAAACAACAATTACTTGGCAACAATAAGGCAGAAGGGGATTAATGGGCAGCT MAFLKLRDQ|rwgltlssrleysgtiiahcslh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19645 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17428519:- chr3:17198654-18486309:- chr3:17470011:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 1 0 1 88 139 ENST00000399451.6 ENST00000696125.1 upstream downstream duplicates(1),mismatches(2) GGTCTTCTCAGCGCAGTCGGCCGCGGACCCGCTGGTCCCGGGCAGCGGCCAAGGCTACTGGGGCGGGAGCAGTGGGCCGGgCGGCGGCGGCAGCGGCAGCGGCGGAGGAGGAGGAGGCTGGAGTGGGCGCGGAGGCGACCGCCATGGCGTTCCTCAAtCTCCGTGACCAG|GAGATTCAAATAAAAATGGAA...AAGGGACTTTTAATTCCTATAG___GAAAGAATGGGAAGAACTATTTGTAAACAACAATTACTTGGCAACAATAAGGCAGAAGGGGATTAATGGGCAGCTGAGAAGCAGCAGGTTCCGC MAFLnLRDQ|eiqikm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19647 CARS1::ATL1 ENSG00000110619.18::ENSG00000198513.14 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1843 FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3017106:- chr11:3022152-3078843:- chr11:3038336:- ATL1 ENSG00000198513.14 protein_coding + + chr14:50532509-50634017:+ chr14:50613259:+ chr14:50999227-51100735:+ chr14:51079977:+ chr11:3017057 chr14:50610974 NA NA chr11:3038287 chr14:51077692 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none tRNA_synthetases_class_I_(C)_catalytic_domain(100%)|Guanylate-binding_protein__N-terminal_domain(37%) tRNA-synt_1e(100%)|GBP(25%) 5 3 8 334 422 ENST00000397111.9 ENST00000556478.3 upstream upstream duplicates(5),mismatches(1) GTTTTTCTTAAATGTGAAAGATATCCTTCGCGCTCCTGTTGACATCACTGGTCAGTTTGAGAAGTGGGGAGAAGAAGAAGCAGAACTGAATAAGAA___CTTTTATGACAAGAAGACAGCAATTCACAAAGCCCTCTGTGACAATGTTGACACCCGCACCGTCATGGAAGAGATGCGGGCCTTGGTCAGTCAGTGCAACCTCTATATGGCAGCCCGGAAAGCCGTGAGGAAGAGGCCCAACCAGGCTCTGCTGGAGAACATCGCCCTGTACCTCACCCATATGCTGAAG|AGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATAtGAATTTTCATATGGAGCCGATGGTGGTGCCAAATTCTTGGAAAAACGCCTCAAG___GTCTCAGGGAACCAGCATGAAGAACTACAGAACGTCAGAAAACACATCCATTCCTGTTTCACCAACATTTCCTGTTTTC FFLNVKDILRAPVDITGQFEKWGEEEAELNKNFYDKKTAIHKALCDNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLK|SLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19649 ERI3::ST3GAL3 ENSG00000117419.16::ENSG00000126091.21 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44284835:- chr1:44686742-44820932:- chr1:44750507:- ST3GAL3 ENSG00000126091.21 protein_coding + - chr1:43705824-43931165:+ chr1:43799523:- chr1:44171495-44396837:+ chr1:44265194:- chr1:44276577,chr1:44276579 chr1:43828762,chr1:43828761 NA NA chr1:44742249,chr1:44742251 chr1:44294434,chr1:44294433 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none Exonuclease(65%)| RNase_T(52%)| 8 3 4 494 18 ENST00000372257.7 unknown upstream downstream duplicates(3) GAG___TTTTAGATGCTTCTGGATGTTCAATGCTAGCACCTTTACAGACTGGAGCAGCTCGATTTTCTTCGTATTTACTTTCAAGAGCAAGAAAAGTGCTG...CTTTGAGGCCACGTGCGACAAGCCACAGATTCATCCTCAG___GAAATCATCGAGTTCCCCATCCTAAAGCTAAATGGCCGGACCATGGAGATTGAGTCTACCTTTCACATGTATGTCCAGCCTGTAGTCCATCCACAGCTTACCCCATTCTGTACAGAG___CTCACCGGGATTATTCAAGCCATGGTGGATGGTCAGCCAAGCCTGCAGCAAGTGCTGGAG___GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG|GACACACACAGAAGGTTCCATCTATGAGGAATGGACCCTTTCCAAACACTGAATCTGCTGATGTCTTGATCTTGGACTTCCCAGCCTTCAGAACTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19650 ERI3::ENSG00000284989 ENSG00000117419.16::ENSG00000284989.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44284835:- chr1:44686742-44820932:- chr1:44750507:- ENSG00000284989 ENSG00000284989.1 protein_coding + - chr1:43650149-43931014:+ chr1:43799523:- chr1:44115820-44396686:+ chr1:44265194:- chr1:44276577,chr1:44276579 chr1:43828762,chr1:43828761 NA NA chr1:44742249,chr1:44742251 chr1:44294434,chr1:44294433 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none Exonuclease(65%)| RNase_T(52%)| 8 3 3 494 18 ENST00000372257.7 unknown upstream downstream duplicates(3) GAG___TTTTAGATGCTTCTGGATGTTCAATGCTAGCACCTTTACAGACTGGAGCAGCTCGATTTTCTTCGTATTTACTTTCAAGAGCAAGAAAAGTGCTG...CTTTGAGGCCACGTGCGACAAGCCACAGATTCATCCTCAG___GAAATCATCGAGTTCCCCATCCTAAAGCTAAATGGCCGGACCATGGAGATTGAGTCTACCTTTCACATGTATGTCCAGCCTGTAGTCCATCCACAGCTTACCCCATTCTGTACAGAG___CTCACCGGGATTATTCAAGCCATGGTGGATGGTCAGCCAAGCCTGCAGCAAGTGCTGGAG___GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG|GACACACACAGAAGGTTCCATCTATGAGGAATGGACCCTTTCCAAACACTGAATCTGCTGATGTCTTGATCTTGGACTTCCCAGCCTTCAGAACTGTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19653 ENSG00000232184::SDCCAG8 ENSG00000232184.1::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000232184 ENSG00000232184.1 lncRNA - - chr1:243702857-243740821:- chr1:243739523:- chr1:243866159-243904123:- chr1:243902825:- SDCCAG8 ENSG00000054282.16 protein_coding + - chr1:243256034-243500091:+ chr1:243372345:- chr1:243419336-243663393:+ chr1:243535647:- chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243731955,chr1:243731957 chr1:243494354,chr1:243494373,chr1:243494378,chr1:243494391,chr1:243494408,chr1:243494412,chr1:243394244,chr1:243394243 NA NA chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243895257,chr1:243895259 chr1:243657656,chr1:243657675,chr1:243657680,chr1:243657693,chr1:243657710,chr1:243657714,chr1:243557546,chr1:243557545 NA NA sense antisense unknown exon/splice-site intron deletion/read-through/5'-5' high none none none 4 6 2 90 144 ENST00000453572.1 unknown upstream downstream mismappers(1),mismatches(1) GGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___TCTAGGTTAGAAGAGGCAAAAATTGAAGACCTACATTTGTACTGTTCAACAAAGTAGCCATGGGCCAAAGTGGCTGTTGAGCACTTGAAAG|GGTGACTTGTTTGTGTAACAGAAGATGAGAATGGGGAGAAGAAAAATTACAGAACAGTAAGAAGACTAGATCCAAAAATCCTCGCAAGTTAAAAGAAGGAACTGGTGGATTTGAGGCTGACAAATTTTGACAATGTGAATTTATC...AGATGAGAAAACTGAAGCTCACAGATGTTAAGTAACTTACATAAGATTATACAGTGGCAGAGCTGAGATTCAAAACGGAGTTAGTCTGATTTCAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19654 SPRTN::PBX1 ENSG00000010072.16::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPRTN ENSG00000010072.16 protein_coding + + chr1:231337104-231355023:+ chr1:231339868:+ chr1:231472850-231490769:+ chr1:231475614:+ PBX1 ENSG00000185630.20 protein_coding + - chr1:164555584-164899296:+ chr1:164624541:- chr1:164524821-164868533:+ chr1:164593778:- chr1:231342034,chr1:231342054 chr1:164624691,chr1:164624691 NA NA chr1:231477780,chr1:231477800 chr1:164593928,chr1:164593928 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none SprT-like_family(57%)| SprT-like(10%),Vps51(100%)| 3 2 5 372 6 ENST00000295050.12 unknown downstream downstream duplicates(1) CGCCTGTGATCCTGGCAACGATGGATGATGACTTGATGTTGGCACTGCGGCTTCAGGAGGAGaGGAACTTGCAGtAGGCGGAGCGCGATCATGCCCAGGAG...CGACCAATTCTTCTGGGGCCAGCTGGAGGCCGTCGAGGTGAAGTGGAGCGTGCGAATGACCCT___GTGTGCTGGGATATGCAGCTATGAAGGGAAGGGTGGAATGTGTTCCATCCGTCTCAGCGAACCCCTTTTGAAGTTGAGGCCAAGAAAGGATCTTGTAGAG|GCTCCCTCAGGGTCCGTGGCCCACAAATTGAGAATCACCATGTTAGAGGAAGAAAGATACCAGCTGAAGGAATGCATGCCTCTAACCAATTCTTTCATTGAGAGAAAATGtCATTCAAACAGCTtAATGATTTTACA DQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVE|apsgsvahklritmleeeryqlkecmpltnsfierkchsnslmil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19656 ARHGAP12::ZNF277 ENSG00000165322.18::ENSG00000198839.10 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1846 FALSE NA FALSE NA ARHGAP12 ENSG00000165322.18 protein_coding - - chr10:31805398-31928876:- chr10:31908172:- chr10:32094326-32217804:- chr10:32197100:- ZNF277 ENSG00000198839.10 protein_coding + + chr7:112206695-112343934:+ chr7:112286873:+ chr7:111846750-111983989:+ chr7:111926928:+ chr10:31900812,chr10:31900814 chr7:112243678,chr7:112243676 NA NA chr10:32189740,chr10:32189742 chr7:111883733,chr7:111883731 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Linker_region_between_SH3_and_WW_domains_on_ARHGAP12(80%),Variant_SH3_domain(100%)|C2H2_type_zinc-finger_(2_copies)(100%) SH3-WW_linker(1%),SH3_1(100%),SH3_9(100%)|zf-C2H2(100%),zf-C2H2_2(100%),zf-C2H2_4(100%) 3 0 6 102 96 ENST00000375245.8 ENST00000361822.8 upstream upstream duplicates(1) CCTGGACCTGACCCATAATAACGGAAAGTTTAACAATGACTCACATTCTCCTAAAGTTTCCAGCCAGAATAGGACACGCTCATTTGGTCATTTTCCCGGTCCAGAGTTCTTGGATGTAGAGAAAACTAGCTTCTCCCAGGAACAATCTTGTGATTCCGCAGGAGAAGGCTCTGAAAGAATACATCAAGATTCTGAATCTGGTGATGAACTTAGCAGCAGCTCCACTGAACAGATAAGG|ACAGTAAGGATTGTATCCTGGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATCTGTGCCTTGTATTTTCTGTGAAGAACATTTTCCTGTGGCTGAACAAGACAAACTTCTGAAGCACATGATTATTGAGCATAAGATTGTCATAGCTGATGTCAAGTTGGTTGCTGATTTCCAAAG___GTACATTTTATATTGGAGGAAAAGGTTCACTGAACAGCCCATCACAGATTTTTGTAGTGTAATA LDLTHNNGKFNNDSHSPKVSSQNRTRSFGHFPGPEFLDVEKTSFSQEQSCDSAGEGSERIHQDSESGDELSSSSTEQIR|tvrivswsrfpcqkvqvappl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19657 ANKRD13B::TAOK1 ENSG00000198720.13::ENSG00000160551.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD13B ENSG00000198720.13 protein_coding + + chr17:29589769-29614761:+ chr17:29608240:+ chr17:27916787-27941779:+ chr17:27935258:+ TAOK1 ENSG00000160551.12 protein_coding + + chr17:29390363-29551903:+ chr17:29478251:+ chr17:27717381-27878921:+ chr17:27805269:+ chr17:29608714 chr17:29477780 NA NA chr17:27935732 chr17:27804798 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ankyrin_repeats_(3_copies)(100%)|Protein_kinase_domain(64%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),ArfGap(100%)|PK_Tyr_Ser-Thr(39%),Pkinase(39%) 3 2 3 439 303 ENST00000394859.8 ENST00000261716.8 downstream upstream none CTCGTGTGGCACAACCGCCACCGCGAGCTGGAGAAGGAGGTCCGCGCGGGCCAG___GTGGACATCGAGCAGCTGGATCCCCGCGGCCGGACTCCCCTGCACCTGGCCACCACGCTGGGG...CCCTCCCCCAGTGCTCCAGGAGGCTGTGAGTACCCGGGACCTGGAGCTGGTGCAGCTGGTGCTTCGGTACCGGGACTACCAGCGGGTGGTGAAGCGGCTGGCGGGCATCCCCGTGCTCCTGGAGAAGCTGCGCAAG___GCCCAGGACTTCTACGTGGAGATGAAATGGGAGTTCACTAGCTGGG|TTCACAAAAAGCCATTACAAGAAGTGGAAATAGCAGCAATTACACATGGTGCTCTTCAGGGATTAGCCTACTTACATTCTCATACTATGATTCATAG___AGATATCAAAGCAGGAAATATCCTTCTGACAGAACCAGGCCAGGTGAAACTTGCTGACTTTGGCTCTGCTTCCATGGCATCAC pppVLQEAVSTRDLELVQLVLRYRDYQRVVKRLAGIPVLLEKLRKAQDFYVEMKWEFTSW|vHKKPLQEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEPGQVKLADFGSASMAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase TAO1 STE STE20 TAO Q7L7X3 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19659 SPRTN::ENSG00000228863 ENSG00000010072.16::ENSG00000228863.8 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3387 FALSE NA SPRTN ENSG00000010072.16 protein_coding + + chr1:231337104-231355023:+ chr1:231339868:+ chr1:231472850-231490769:+ chr1:231475614:+ ENSG00000228863 ENSG00000228863.8 lncRNA + + chr1:160670778-160699761:+ chr1:160698955:+ chr1:160640568-160669551:+ chr1:160668745:+ chr1:231347478,chr1:231347479 chr1:160695952,chr1:160695950 NA NA chr1:231483224,chr1:231483225 chr1:160665742,chr1:160665740 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none SprT-like_family(57%)| SprT-like(10%),Vps51(100%)| 1 1 4 372 128 ENST00000295050.12 ENST00000628340.1 downstream upstream none CTGGGGCCAGCTGGAGGCCGTCGAGGTGAAGTGGAGCGTGCGAATGACCCT___GTGTGCTGGGATATGCAGCTATGAAGGGAAGGGTGGAATGTGTTCCATCCGTCTCAGCGAACCCCTTTTGAAGTTGAGGCCAAGAAAGGATCTTGTAGAG|TCTGCAGGTGTACCCAACAGCTCCGAAGAGACAGTGACATCGAGAACGGGCCATGATGACGATGGCGGTTTTGTCGAAAAGAAAAGGGGGAAATGTGGGGAAAAGCAAGAGAGATGAGATTGTTACTGTGTCTGTATAGAAAGAAGTAGACATAGGAGACTCCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGAGATGCTGTTAATCTATGACCTTA WGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVE|sagvpnsseetvtsrtghdddggfvekkrgkcgekqer* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19667 AKT3::MYCL ENSG00000117020.19::ENSG00000116990.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1847 TRUE 3388 TRUE 1283 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none PH_domain(100%),Protein_kinase_domain(100%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|HLH(100%),Myc_N(4%) 34 40 37 11807 16960 ENST00000336199.9 ENST00000372816.3 upstream downstream duplicates(27),low_entropy(2),mismatches(14) CCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|AGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGA QDHEKLFELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|rmkklml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 19670 MYCL::AKT3 ENSG00000116990.12::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39900939:- chr1:40361100-40367928:- chr1:40366611:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243573048:- chr1:243651535-244014381:- chr1:243736350:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Myc_amino-terminal_region(70%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(67%) Myc_N(24%)|CCCAP(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(29%),Pkinase(29%),Pkinase_C(100%) 0 1 1 20420 8894 ENST00000372816.3 ENST00000336199.9 upstream downstream none CCCAAGGCGTCCGCCGCCCCGGACTGCACTCCCAGCCTCGAAGCCGGCAACCCGGCGCCCGCCGCCCCCTGTCCGCTGGGCGAACCCAAGACCCAGGCCTGCTCCGGGTCCGAGAGCCCAAGCGACTCGG|CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCG PKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS|avfpfveragvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19671 AKT3::MYCL ENSG00000117020.19::ENSG00000116990.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3388 TRUE 1283 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none PH_domain(9%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(29%) PH(0%)|HLH(100%),Myc_N(4%) 1 0 0 10643 16960 ENST00000673466.1 ENST00000372816.3 upstream downstream none AGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|AGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTG MSDVTIVKEGWVQKR|eNEEIDVVTVEKRQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 19672 AKT3::MYCL ENSG00000117020.19::ENSG00000116990.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3388 TRUE 1283 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39901443:- chr1:40361100-40367928:- chr1:40367115:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none PH_domain(9%)|Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(97%) PH(0%)|HLH(100%),Myc_N(88%) 0 1 0 10643 11059 ENST00000336199.9 ENST00000397332.3 upstream downstream none GTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GGAGCGGACATGGACTACGACTCGTACCAGCACTATTTCTACGACTATG...AAGGCTGGGGCAGGAACTACGCCTCCATCATACGCCGTGACTGCATGTGGAGCGGCTTCTCGGCCCGGGAACGGCTGGAGAGAGCTGTGAGCGACCGGCTC MSDVTIVKEGWVQKR|gsghglrlvpalflrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 19674 AKT3::IMPG1 ENSG00000117020.19::ENSG00000112706.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- IMPG1 ENSG00000112706.12 protein_coding - + chr6:75921114-76072678:- chr6:75946849:+ chr6:76630831-76782395:- chr6:76656566:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none PH_domain(100%),Protein_kinase_domain(100%)| Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 18 10 48 11807 77 ENST00000336199.9 unknown upstream upstream duplicates(12),mismappers(1),mismatches(5) GGGAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|AATGCTGTCTCTGATCCTGAATTACATGATGAAGTAGCTATTCTGATAATGAACTGTGATTGAAAGATTGCTTAGGTAGGAAGCCCCGAGGTTGTTGCAGAGCACTGAGAAAGTGCTTTTGACTTCTAGCAGAATGTAAATTAGCTTGGCTGTGGGCTACATTAAAAAAAACTCcTAAACACAGCAAAAGTTTTGTTCTG GRLPFYNQDHEKLFELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|navsdpelhdevailimncd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19675 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + - chr1:243256034-243500091:+ chr1:243372345:- chr1:243419336-243663393:+ chr1:243535647:- chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243714952,chr1:243731955,chr1:243776968,chr1:243731957,chr1:243684102 chr1:243494354,chr1:243494373,chr1:243494378,chr1:243494391,chr1:243494408,chr1:243494412,chr1:243394244,chr1:243423442,chr1:243394243,chr1:243492320 NA NA chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243878254,chr1:243895257,chr1:243940270,chr1:243895259,chr1:243847404 chr1:243657656,chr1:243657675,chr1:243657680,chr1:243657693,chr1:243657710,chr1:243657714,chr1:243557546,chr1:243586744,chr1:243557545,chr1:243655622 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none PH_domain(9%)| PH(0%)| 14 37 21 10643 144 ENST00000673466.1 unknown upstream downstream duplicates(17),mismatches(5) CGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GGTGACTTGTTTGTGTAACAGAAGATGAGAATGGGGAGAAGAAAAATTACAGAACAGTAAGAAGACTAGATCCAAAAATCCTCGCAAGTTAAAAGAAGGAACTGGTGGATTTGAGGCTGACAAATTTTGACAATGTGAATTTATCACTCAGAAGCCAATGGATGAATTCAAAGAATATATTTCCAAAA___ATGAGAAAACTGAAGCTCACAGATGTTAAGTAACTTACATAAGATTATACAGTGGCAGAGCTGAGA MSDVTIVKEGWVQKR|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19676 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:243689504,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243750764,chr1:243689512,chr1:243608823,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329,chr1:243750707,chr1:243792746,chr1:243792706,chr1:243792692,chr1:243792679 chr1:243322036,chr1:243423413,chr1:243423402,chr1:243423388,chr1:243423371,chr1:243288707,chr1:243322030,chr1:243337871,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713,chr1:243478854,chr1:243487228,chr1:243487228,chr1:243487228,chr1:243487228 NA NA chr1:243852806,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243914066,chr1:243852814,chr1:243772125,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631,chr1:243914009,chr1:243956048,chr1:243956008,chr1:243955994,chr1:243955981 chr1:243485338,chr1:243586715,chr1:243586704,chr1:243586690,chr1:243586673,chr1:243452009,chr1:243485332,chr1:243501173,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015,chr1:243642156,chr1:243650530,chr1:243650530,chr1:243650530,chr1:243650530 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) PH(0%)|CCCAP(4%) 3 11 5 10643 6860 ENST00000673466.1 ENST00000366541.8 upstream upstream duplicates(6),low_entropy(2),mismatches(8) CGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAG___TTACCCAGCATGCCACAATCTGATTGCTGACCTGGATGGAACAGAGTGAAATAAATGATTTACAAAGAGATATTTACATTCATCTGGTTTAGACTTAATATGCCACAACGCACCACGACCTTCCCAGGGTG MSDVTIVKEGWVQKR|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19677 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243330540:+ chr1:243419336-243663393:+ chr1:243493842:+ chr1:243689504,chr1:243689512 chr1:243322036,chr1:243322030 NA NA chr1:243852806,chr1:243852814 chr1:243485338,chr1:243485332 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(49%) PH(74%)|CCCAP(69%) 6 0 12 13222 1145 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(4),mismatches(2) GGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GCTTTAATCCAGTGTGACCAGTTGAGGAAGGAGCTGGAGAGGCAGGCGGAGCGACTTGAAAAAGAtCTTGCATCTCAGCAAGAGAAAAGGGCCATTGAGAAAGACATGATGAAAAAGGAAATAACGAAAGAAAGGGAGTACATGGGATCAAAG___ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAGGAA MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVA|sfnpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19678 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243415702:+ chr1:243419336-243663393:+ chr1:243579004:+ chr1:243689504,chr1:243689512,chr1:243565679,chr1:243565677,chr1:243565634 chr1:243322036,chr1:243322030,chr1:243395261,chr1:243395261,chr1:243395261 NA NA chr1:243852806,chr1:243852814,chr1:243728981,chr1:243728979,chr1:243728936 chr1:243485338,chr1:243485332,chr1:243558563,chr1:243558563,chr1:243558563 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(23%) PH(0%)|CCCAP(34%) 8 6 3 10643 1765 ENST00000673466.1 ENST00000366541.8 upstream upstream duplicates(4),mismatches(2) TAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|ACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGACAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAG MSDVTIVKEGWVQKR|drkkiafsralarkqrpkpfrpskesrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19679 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243637611:- chr1:243651535-244014381:- chr1:243800913:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243286272:+ chr1:243419336-243663393:+ chr1:243449574:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(14%)|Centrosomal_colon_cancer_autoantigen_protein_family(80%) PH(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%)|CCCAP(87%) 0 1 13 11380 139 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(5),mismatches(4) TGCAGAGGCAAGAAGAGGAGAGAATGAATTGTAGTCCAACTTCAtAAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGA...ATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAG|GAGGAACTCTCTGGAATGAAAAATAAAATACAAGTAGTTGTGCTTGAAAACGAAGGGCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACACTGAG ILVREKASGKYYAMKILKKEVIIAK|EELSGMKNKIQVVVLENEGLQQQLKSQRQEETL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19680 SDCCAG8::AKT3 ENSG00000054282.16::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3390 TRUE 1285 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426558:+ chr1:243419336-243663393:+ chr1:243589860:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843282:- chr1:243651535-244014381:- chr1:244006584:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) CCCAP(69%)|CCCAP(100%),Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 2 2 6 3990 3150 ENST00000366541.8 ENST00000673466.1 downstream downstream duplicates(1),mismatches(2) CAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAA...GTCTGTAACCCCGGGGTTTGTGAATG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGA vcnpgvce*SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|lshh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19682 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243270105:+ chr1:243419336-243663393:+ chr1:243433407:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(97%) PH(0%)|CCCAP(94%) 0 2 7 10643 196 ENST00000673466.1 ENST00000366541.8 upstream upstream duplicates(4),mismatches(2) CTCCCCCCGCCCCCCCCCGGCTCCATCCTCCGCCGCCGCCCGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|AACATGCCAGCAGAAGCATTCACCAACTGACATGTGCCCTGAAAGAAGGCGATGTCACTATTGGAGAAGATGCACCAAATCTTTCTTTTAGCACCAGTGTGGGAAATGAGGACGCCAGGACAGCCTGGCCCGAATTACAACAGAGCCATGCTG___TTAATCAGCTCAAAGATTTG MSDVTIVKEGWVQKR|eHASRSIHQLTCALKEGDVTIGEDAPNLSFSTSVGNEDARTAWPELQQSHAVNQLKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19683 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426427:+ chr1:243419336-243663393:+ chr1:243589729:+ chr1:243689504,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243689512,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329 chr1:243322036,chr1:243423413,chr1:243423402,chr1:243423388,chr1:243423371,chr1:243322030,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713 NA NA chr1:243852806,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243852814,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631 chr1:243485338,chr1:243586715,chr1:243586704,chr1:243586690,chr1:243586673,chr1:243485332,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%) PH(0%)|CCCAP(30%) 2 6 1 10643 4597 ENST00000673466.1 ENST00000366541.8 upstream upstream duplicates(2) GTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG...GTCGGAAGAGGTGGACCGGCTGCGGACCCAG MSDVTIVKEGWVQKR|dlk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19684 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243341039:+ chr1:243419336-243663393:+ chr1:243504341:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(100%)|Centrosomal_colon_cancer_autoantigen_protein_family(42%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|CCCAP(65%) 0 1 8 11807 1652 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(3),mismatches(2) GTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|ATGTTGATCTTGTCTCAGAATATTGCCCAACTGGAGGCCCAGGTGGAAAAGGTTACAAAGGAAAAGATTTCAGCTATTAATCAACTGGAGGAAATTCAAAGCCAGCTGGCTTCTCGGGAAATGGATGTCACAAAG___GTGTGTGGAGAAATGCGCTATCAGCTGAATAAAACCAACATGGAGAAGGATGAG GGPDDAKEIMRHSFFSGVNWQDVYDKK|MLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19685 SDCCAG8::AKT3 ENSG00000054282.16::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3390 TRUE 1285 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426558:+ chr1:243419336-243663393:+ chr1:243589860:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- chr1:243487290,chr1:243487292,chr1:243487311,chr1:243460520 chr1:243792759,chr1:243792759,chr1:243792759,chr1:243845369 NA NA chr1:243650592,chr1:243650594,chr1:243650613,chr1:243623822 chr1:243956061,chr1:243956061,chr1:243956061,chr1:244008671 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) CCCAP(69%)|CCCAP(100%),Kinase-like(100%),PH(25%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 2 0 5 3990 11668 ENST00000366541.8 ENST00000336199.9 downstream downstream duplicates(1),mismatches(3) GTTTATTGTTATTTCTAGAAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAA...GTCTGTAACCCCGGGGTTTGTGAATG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAAC...AAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAG vcnpgvce*SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|riykkleakilpfedrwlihri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19686 SDCCAG8::AKT3 ENSG00000054282.16::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3390 TRUE 1285 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489140:+ chr1:243419336-243663393:+ chr1:243652442:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Centrosomal_colon_cancer_autoantigen_protein_family(99%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) CCCAP(95%)|CCCAP(100%),Kinase-like(100%),PH(25%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 2 5 10390 11668 ENST00000366541.8 ENST00000336199.9 downstream downstream duplicates(2),mismatches(2) GCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAA...ATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG...ACAAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAG___ACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAG QNQLLLERQSLSEEVDRLRTQ|eni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19687 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243274543:+ chr1:243419336-243663393:+ chr1:243437845:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(86%) PH(0%)|CCCAP(92%) 1 0 5 10643 151 ENST00000673466.1 ENST00000366541.8 upstream upstream duplicates(3),mismatches(2) CTCCCCCCGCCCCCCCCCGGCTCCATCCTCCGCCGCCGCCCGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|AGGTCATTAGAACATGAGGAAACCAATATGCCTACTATGCACGACCTTGTTCATACTATTAATGACCAGTCTCAATATATTCA MSDVTIVKEGWVQKR|evirt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19688 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243415702:+ chr1:243419336-243663393:+ chr1:243579004:+ chr1:243689504,chr1:243689512,chr1:243565679,chr1:243565677,chr1:243565634 chr1:243322036,chr1:243322030,chr1:243395261,chr1:243395261,chr1:243395261 NA NA chr1:243852806,chr1:243852814,chr1:243728981,chr1:243728979,chr1:243728936 chr1:243485338,chr1:243485332,chr1:243558563,chr1:243558563,chr1:243558563 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(23%) PH(74%)|CCCAP(34%) 1 1 4 13222 1765 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(2),mismatches(1) GTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|ACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGACAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAAACTGGAACAAATCTCTCAAAAAACCAG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGA MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVA|nrkkiafsralarkqrpkpfrpskesrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19689 SDCCAG8::AKT3 ENSG00000054282.16::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3390 TRUE 1285 SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426558:+ chr1:243419336-243663393:+ chr1:243589860:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664883:- chr1:243651535-244014381:- chr1:243828185:- chr1:243487290,chr1:243487292,chr1:243487311,chr1:243460520 chr1:243792759,chr1:243792759,chr1:243792759,chr1:243845369 NA NA chr1:243650592,chr1:243650594,chr1:243650613,chr1:243623822 chr1:243956061,chr1:243956061,chr1:243956061,chr1:244008671 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Centrosomal_colon_cancer_autoantigen_protein_family(93%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) CCCAP(69%)|CCCAP(100%),Kinase-like(100%),PH(9%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 1 5 3990 13135 ENST00000366541.8 ENST00000336199.9 downstream downstream duplicates(1),mismatches(2) GTCTGTAACCCCGGGGTTTGTGAATG___ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG|AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAG vcnpgvce*SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQr|mpvnenrttkakhiynqmspvdycyreniscrysrgkgrmdrsypgcsrqtaearr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19690 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243613671:- chr1:243651535-244014381:- chr1:243776973:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378721:+ chr1:243419336-243663393:+ chr1:243542023:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(32%)|Centrosomal_colon_cancer_autoantigen_protein_family(30%) PH(100%),PK_Tyr_Ser-Thr(26%),Pkinase(26%)|CCCAP(49%) 1 0 5 9902 1800 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(3),mismatches(1) GAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|GAAATAGAGAAATTGAGAATAGAACTGGATGAAAGCAAACAACACTTGG...CTGGGCGAATCTGAGCACCAACTGCACCTCACCAG___CATACTGAGGATTCATCCATAAACCTGAGGTTGACAACCATCTTCTTCTCTACTGATACAGTGAAG EVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGE|EIEKLRIELDESKQHL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19691 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243739523:- chr1:243651535-244014381:- chr1:243902825:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378721:+ chr1:243419336-243663393:+ chr1:243542023:+ chr1:243689504,chr1:243689512 chr1:243322036,chr1:243322030 NA NA chr1:243852806,chr1:243852814 chr1:243485338,chr1:243485332 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(30%) PH(52%)|CCCAP(49%) 0 1 3 90 1800 ENST00000550388.1 ENST00000366541.8 upstream upstream duplicates(2),mismatches(1) CAAAAATTGAAGACCTACATTTGTACTGTTCAACAAAGTAGCCATGGGCCAAAGTGGCTGTTGAGCACTTGAAAG|GAAATAGAGAAATTGAGAATAGAACT...AAGCAAACAACACTTGGAACAGGAGCAGCAGAAGGCAGCCCTGGCCAGAGAGGAGTGCCTGAGACTAACAGAACTGCTGGGCGAATCTGAGCACCAACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19692 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664772:- chr1:243651535-244014381:- chr1:243828074:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426427:+ chr1:243419336-243663393:+ chr1:243589729:+ chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329 chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713 NA NA chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631 chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(89%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%) PH(90%)|CCCAP(30%) 2 0 2 13798 4597 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(2) AGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAG...CTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTT...CTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG|ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG___GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGC VIERTFHVDTPEEr|SEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19693 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243499756:+ chr1:243419336-243663393:+ chr1:243663058:+ chr1:243689504,chr1:243714952,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243750764,chr1:243689512,chr1:243608823,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329,chr1:243750707,chr1:243792746,chr1:243792706,chr1:243792692,chr1:243792679,chr1:243714957 chr1:243322036,chr1:243494345,chr1:243423413,chr1:243423402,chr1:243423388,chr1:243423371,chr1:243288707,chr1:243322030,chr1:243337871,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713,chr1:243478854,chr1:243487228,chr1:243487228,chr1:243487228,chr1:243487228,chr1:243494340 NA NA chr1:243852806,chr1:243878254,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243914066,chr1:243852814,chr1:243772125,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631,chr1:243914009,chr1:243956048,chr1:243956008,chr1:243955994,chr1:243955981,chr1:243878259 chr1:243485338,chr1:243657647,chr1:243586715,chr1:243586704,chr1:243586690,chr1:243586673,chr1:243452009,chr1:243485332,chr1:243501173,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015,chr1:243642156,chr1:243650530,chr1:243650530,chr1:243650530,chr1:243650530,chr1:243657642 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(0%) PH(0%)|CCCAP(0%) 1 1 1 10643 13007 ENST00000673466.1 ENST00000366541.8 upstream upstream none GCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|TTACCCAGCATGCCACAATCTGATTGCTGACCTGGATGGAACAGAGTGAAATAAATG...AATATGCCACAACGCACCACGACCTTCCCAGGGTGACACCGCCTCAGCCTGCAGTGGGGCTGGTCCTCATCAACGCGGGCGCTGTCCCCGCACGCAGTCGG MSDVTIVKEGWVQKR|vtqhati* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19694 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243613671:- chr1:243651535-244014381:- chr1:243776973:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426427:+ chr1:243419336-243663393:+ chr1:243589729:+ chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329 chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713 NA NA chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631 chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(32%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%) PH(100%),PK_Tyr_Ser-Thr(26%),Pkinase(26%)|CCCAP(30%) 1 0 2 9902 4597 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(2) GGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAG___GATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAG...TAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|ATCTGAAATAGCTCAACTCAGTCAAGA...AGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG___GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGC TSLKYSFQTKDRLCFVMEYVNGGE|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19695 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426427:+ chr1:243419336-243663393:+ chr1:243589729:+ chr1:243494329 chr1:243418713 NA NA chr1:243657631 chr1:243582015 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(100%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|CCCAP(30%) 0 1 2 11807 4597 ENST00000336199.9 ENST00000366541.8 upstream upstream duplicates(1) AAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATTGGGAAAGTTACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG___GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGC KEIMRHSFFSGVNWQDVYDKK|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19696 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243552729:- chr1:243651535-244014381:- chr1:243716031:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:243494329 chr1:243418713 NA NA chr1:243657631 chr1:243582015 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(93%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(92%),Pkinase(92%)|CCCAP(4%) 1 0 1 12832 6860 ENST00000336199.9 ENST00000366541.8 upstream upstream none CTATTGCTTCAGAATAAAAAAGAAGTATAGAAATTTCTTGGAAGATATGT___GTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGG...TTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCC...GCAGGTGGGAGTCCTTGGGCGGGCGTCTACAGGTGGATCTTTTATGCACCTCAACAGGCCGGCTTTCTCACGGATCACATCGGTTAGCAGTAAGCTGGGAG FELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKr|LRQLDKHSQATAQQLVQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19697 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243499756:+ chr1:243419336-243663393:+ chr1:243663058:+ chr1:243494329 chr1:243418713 NA NA chr1:243657631 chr1:243582015 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(100%),Protein_kinase_domain(100%)|Centrosomal_colon_cancer_autoantigen_protein_family(0%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|CCCAP(0%) 3 0 0 11807 13007 ENST00000336199.9 ENST00000366541.8 upstream upstream none CTGGCACCAGAG___GTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTT...TTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACG___CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|TTACCCAGCATGCCACAATCTGATTGCTGACCTGGATGGAACAGAGTGAAATAAATGATTTACAAAGAGATATTTAC SDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKK|LPSMPQSDC* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19698 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:243689504,chr1:243689512,chr1:243608823,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329 chr1:243322036,chr1:243322030,chr1:243337871,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713 NA NA chr1:243852806,chr1:243852814,chr1:243772125,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631 chr1:243485338,chr1:243485332,chr1:243501173,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(51%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) PH(74%)|CCCAP(4%) 0 2 0 13222 6860 ENST00000336199.9 ENST00000366541.8 upstream upstream none CAACTTTTCAGTGGCAA|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGA...ACTTAATATGCCAgAACGCACCACGACCTTCCCAGGGTGACACCGCCTCAGCCTGCAGTGGGGCTGGTCCTCATCAACGCGGGCGCTGTCCCCGCACGCAG NFSVA|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19699 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243850040:- chr1:243651535-244014381:- chr1:244013342:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243415702:+ chr1:243419336-243663393:+ chr1:243579004:+ chr1:243689504,chr1:243689512,chr1:243565679,chr1:243565677,chr1:243565634 chr1:243322036,chr1:243322030,chr1:243395261,chr1:243395261,chr1:243395261 NA NA chr1:243852806,chr1:243852814,chr1:243728981,chr1:243728979,chr1:243728936 chr1:243485338,chr1:243485332,chr1:243558563,chr1:243558563,chr1:243558563 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Centrosomal_colon_cancer_autoantigen_protein_family(23%) |CCCAP(34%) 0 1 0 2193 1765 ENST00000673466.1 ENST00000366541.8 upstream upstream none CTCTCCTCCCCCCGCCCCCCCCCGGCTCCATCCTCCGCCGCCGCCCGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG|ACAGGAAAAAGATA...AGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19700 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664772:- chr1:243651535-244014381:- chr1:243828074:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:243608823,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329 chr1:243337871,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713 NA NA chr1:243772125,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631 chr1:243501173,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(89%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) PH(90%)|CCCAP(4%) 0 1 0 13798 6860 ENST00000336199.9 ENST00000366541.8 upstream upstream none CAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCC...GATGGAACAGAGTGAAATAAATGATTTACAAAGAGATATTTACATTCATCTGGTTTAGACTTAATATGCCACAACGCACCACGACCTTCCCAGGGTGACAC RCLQWTTVIERTFHVDTPEEr|LRQLDKHSQATA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19701 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243286272:+ chr1:243419336-243663393:+ chr1:243449574:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(9%)|Centrosomal_colon_cancer_autoantigen_protein_family(80%) PH(0%)|CCCAP(87%) 0 0 0 10643 139 ENST00000336199.9 ENST00000366541.8 upstream upstream mismatches(1) GGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGaGAAAGAAGGTTGGGTTCAGAAGAGGG|GAGGAACTCTCTGGAATGAAAAATAAAATACAAGTAGTTGTGCTTGAAAACGAAGGGCTCCAGCAACAGCTAAAATCTCAAAGACAAGAGGAGACACTGAG MSDVTIeKEGWVQKR|ggtlwnek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19702 AKT3::SDCCAG8 ENSG00000117020.19::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3389 TRUE 1284 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243850040:- chr1:243651535-244014381:- chr1:244013342:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ chr1:243689504,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243776968,chr1:243750764,chr1:243689512,chr1:243608823,chr1:243565679,chr1:243565677,chr1:243565634,chr1:243494329,chr1:243750707,chr1:243792746,chr1:243792706,chr1:243792692,chr1:243792679 chr1:243322036,chr1:243423413,chr1:243423402,chr1:243423388,chr1:243423371,chr1:243288707,chr1:243322030,chr1:243337871,chr1:243395261,chr1:243395261,chr1:243395261,chr1:243418713,chr1:243478854,chr1:243487228,chr1:243487228,chr1:243487228,chr1:243487228 NA NA chr1:243852806,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243940270,chr1:243914066,chr1:243852814,chr1:243772125,chr1:243728981,chr1:243728979,chr1:243728936,chr1:243657631,chr1:243914009,chr1:243956048,chr1:243956008,chr1:243955994,chr1:243955981 chr1:243485338,chr1:243586715,chr1:243586704,chr1:243586690,chr1:243586673,chr1:243452009,chr1:243485332,chr1:243501173,chr1:243558563,chr1:243558563,chr1:243558563,chr1:243582015,chr1:243642156,chr1:243650530,chr1:243650530,chr1:243650530,chr1:243650530 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Centrosomal_colon_cancer_autoantigen_protein_family(6%) |CCCAP(4%) 0 0 0 2193 6860 ENST00000673466.1 ENST00000366541.8 upstream upstream mismatches(1) CGGGCTCCAGGAGGCCAGAGGCTCTGTGGGGTGGGGGGAGGACAGGAGGGGAGGAGGAGGGAGGGGGGgCCCCCGcGcCGCCCCCcCcCCTCCCCCCcCCC...CGCCGTTGCAG|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19704 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39422374:+ chr1:39546988-39952849:+ chr1:39888046:+ chr1:243818019,chr1:243818021 chr1:39410471,chr1:39410469 NA NA chr1:243981321,chr1:243981323 chr1:39876143,chr1:39876141 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(71%) PH(0%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(45%) 9 22 18 10643 4549 ENST00000673466.1 ENST00000361689.7 upstream upstream duplicates(9),mismatches(10) GCAG___GCTGAGTCATCACTAGAGAGTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|ATGTTTCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGCAGGTGAATGGACTTGGCCAGGGATTAATTCAGAGTGCAGGAAAAGACTGTGATGTACAGGGTTTAGAACATGACATGGAAGAGATCAATGCTCGATGGAATACATTGAATAAAAAG___GTCGCACAAAGAATTGCACAGCTACAGGAAGCTTTGTTGCATTGTGGGAAGTTTCAAGATGCCTTGGAGCCATTGCTCAGCTGGTTGGCA MSDVTIVKEGWVQKR|dvsertsgsssdeiaagewtwpginsecrkrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19705 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243613671:- chr1:243651535-244014381:- chr1:243776973:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39309570:+ chr1:39546988-39952849:+ chr1:39775242:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(32%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Plectin_repeat(100%),Spectrin_like_domain(100%),Spectrin_repeat(100%) PH(100%),PK_Tyr_Ser-Thr(26%),Pkinase(26%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Plectin(100%),Spectrin(100%),Spectrin_like(100%) 0 1 29 9902 1118 ENST00000336199.9 ENST00000496804.5 upstream upstream duplicates(4),mismatches(4) CTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG|GGTCGAACAATC...AGATTATGAAGAACCTTCAGGCCCACTATGAAGACTTTCTGCAGGATAGTCGTGACTCTGTGCTGTTCTCAGTGGCTGATCGCTTGCGCTTGGAAGAGGAG RHPFLTSLKYSFQTKDRLCFVMEYVNGGE|GRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19706 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243613671:- chr1:243651535-244014381:- chr1:243776973:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39350785:+ chr1:39546988-39952849:+ chr1:39816457:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(32%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(100%) PH(100%),PK_Tyr_Ser-Thr(26%),Pkinase(26%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(100%) 0 1 29 9902 1365 ENST00000336199.9 ENST00000361689.7 upstream upstream duplicates(4),mismatches(4) TTTGTGATGGAATATGTTAATGGGGGCGAG|GATTTACAGGATGACATTCAGAATCGTGCCACCTCATTTGCCtCTGTTGTCAAGGACATTGAGGGGTTCAT...GGCGCTCCAGGAAGAGACACGTGTGGCCCAGAAGGAACTGGAGGAAGCAGTGACCTCCGCCTTACAGCAGGAGACTGAAAAG___AGTAAAGCAGCAAAGGAA FVMEYVNGGE|DLQDDIQNRATSFAsVVKDIEGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19707 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39378461:+ chr1:39546988-39952849:+ chr1:39844133:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(100%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(90%) Kinase-like(100%),PH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(97%) 0 1 29 11807 1887 ENST00000336199.9 ENST00000361689.7 upstream upstream duplicates(2),mismatches(4) TGAGACcCAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG|GTTCCATACTGCCCTCTGTAGGAAGCTCTGTAGGCAGTGTAAACGGATACCACgCCTGCAAAG___ATCTGACGGAGATCCAGTGTGACATGTCAGATGTAAACTTGAAGTATGA RpSFFSGVNWQDVYDKK|vpycpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19708 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243563720:- chr1:243651535-244014381:- chr1:243727022:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39422374:+ chr1:39546988-39952849:+ chr1:39888046:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(100%),Protein_kinase_domain(65%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(71%) Kinase-like(45%),PH(100%),PK_Tyr_Ser-Thr(80%),Pkinase(80%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(45%) 0 1 20 9488 4549 ENST00000336199.9 ENST00000361689.7 upstream upstream duplicates(2),mismatches(4) AGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAG|ATGTTTCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGCAGGTGAATGGACTTGGCCAGGGATTAATTCAGAGTGCAGGAAAAGACTGTGATGTACAGGGTTTAGAACATGACATGGAAGAGATCAATGCTCGATGGAATACATTGAATAAAAAG___GTCGCACAAAGAATTGCACAGCTACAGGAAGCTTTGTTGCATTGTGGGAAGTTTCAAGATGCCTTGGAGCCATTGCTCAGCTGGTTGGCA TFCGTPEYLAPE|MFQKEQVDPLQMKLQQVNGLGQGLIQSAGKDCDVQGLEHDMEEINARWNTLNKKVAQRIAQLQEALLHCGKFQDALEPLLSWL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19709 MACF1::AKT3 ENSG00000127603.32::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3392 TRUE 1287 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39444835:+ chr1:39546988-39952849:+ chr1:39910507:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243512426:- chr1:243651535-244014381:- chr1:243675728:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(78%)|Protein_kinase_C_terminal_domain(100%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(80%),Spectrin_like(100%)|CCCAP(100%),Pkinase_C(100%) 0 1 1 4883 9567 ENST00000361689.7 ENST00000673466.1 downstream downstream none GAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAAG|CTTGTACCTCCTTTTAAACCTCAAGTAACATCTGA...TTTGTTTTTGCATGAAATTGTATCTCAGTCTAAGGTCTCATGCTGTTGCTGCTACTGTCTTACTATTATAGCAACTTTAAGAAGTAATTTTCCAACCTTTG EQSVALLEQKWHVVSSKMEERK|LVPPFKPQVTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19710 MACF1::AKT3 ENSG00000127603.32::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3392 TRUE 1287 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39452350:+ chr1:39546988-39952849:+ chr1:39918022:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243615161:- chr1:243651535-244014381:- chr1:243778463:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(94%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(85%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin(90%),Spectrin_like(100%)|CCCAP(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(75%),Pkinase(75%),Pkinase_C(100%) 1 0 1 5764 11479 ENST00000361689.7 ENST00000336199.9 downstream downstream none GGGAAAGCGAACAGGAACCGTTCAGGTCCTGAAGCGGTCAGGCCGAGAGCTGATTGAGAATAGTCGAGATGACACCACTTGGGTAAAAGGACAGCTCCAGG...CTGTAAACTCTCTGTTTCCAAACAAAGCCGGCTTGAGCAGGCCTTAAAACAA|GATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTA CKLSVSKQSRLEQALKQ|DEVAHTLTESRVLKNT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19711 MACF1::AKT3 ENSG00000127603.32::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3392 TRUE 1287 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39337331:+ chr1:39546988-39952849:+ chr1:39803003:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Calponin_homology_(CH)_domain(100%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) CH(100%),Plectin(100%),SH3_10(100%),Spectrin_like(100%)|CCCAP(100%),Kinase-like(100%),PH(25%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 0 96 11668 ENST00000567887.5 ENST00000336199.9 downstream downstream none CGGCAACTCTGTTTAGAACATGATGAAAAGCTAGTATCCTATCTGTCTCTGTTACGGAACATTGAAATGAGGACCAAACAGATTCAACCTTTGGAGCTAAACCTGGCAGAACTACAGGATCTGCTGTGTCAGGCCAAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAG RQLCLEHDEKLVSYLSLLRNIEMRTKQIQPLELNLAELQDLLCQAK|eni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19712 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243739523:- chr1:243651535-244014381:- chr1:243902825:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39447432:+ chr1:39546988-39952849:+ chr1:39913104:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none PH_domain(9%)|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%),Spectrin_repeat(21%) PH(52%)|EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(100%),Spectrin(16%) 0 1 0 90 5228 ENST00000550388.1 ENST00000361689.7 upstream upstream duplicates(1) GTTCAACAAAGTAGCCATGGGCCAAAGTGGCTGTTGAGCACTTGAAAG|TCAAAGCTGGAAGAGGCCCTCAACTTGGCAACAGAATTCCAGAATTCCCTACA...CTGTCCTTTCCCAGATAGAAGAGCACAAG___GTTTTTGCTAATGAAGTAAATGCTCATCGAGACCAGATCATTGAGCTGGATCAAACTGGGAATCAATTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19713 AKT3::MACF1 ENSG00000117020.19::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3391 TRUE 1286 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243563720:- chr1:243651535-244014381:- chr1:243727022:- MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39479798:+ chr1:39546988-39952849:+ chr1:39945470:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(100%),Protein_kinase_domain(65%)|Growth-Arrest-Specific_Protein_2_Domain(0%) Kinase-like(45%),PH(100%),PK_Tyr_Ser-Thr(80%),Pkinase(80%)|GAS2(0%) 1 0 0 9488 6286 ENST00000336199.9 ENST00000442046.5 upstream upstream duplicates(1) CCGTGATCTCAAG___TTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTaTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAG|CACGAGGTAGAACTAACATTGAACTTAGAGAGAAATTC RDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPE|HEVELTLNLERN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19716 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|PH_domain(90%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),Kinase-like(100%),PH(25%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 4 1 26 10074 11668 ENST00000316891.10 ENST00000336199.9 upstream downstream duplicates(4),mismatches(4) CGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA___AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGA...TGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGG VAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|eni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19717 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664883:- chr1:243651535-244014381:- chr1:243828185:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|PH_domain(48%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),Kinase-like(100%),PH(9%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 2 24 10074 13135 ENST00000316891.10 ENST00000336199.9 upstream downstream duplicates(5),mismatches(4) CGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGCAG|AATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGGAG VAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|nas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19718 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39847220:- chr1:40303782-40349183:- chr1:40312892:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243615161:- chr1:243651535-244014381:- chr1:243778463:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(100%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(85%) AAA_33(100%),IPPT(100%),IPT(100%)|CCCAP(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(75%),Pkinase(75%),Pkinase_C(100%) 0 1 19 11692 11479 ENST00000316891.10 ENST00000336199.9 upstream downstream duplicates(2),mismappers(1),mismatches(4) CGGAAACAAAACCGATGGGTTAAAAACCGTTTTTTGAGCA|GATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACA___TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAG___CTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCG RKQNRWVKNRFLS|r* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19719 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243552943:- chr1:243651535-244014381:- chr1:243716245:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(34%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),Kinase-like(1%),PK_Tyr_Ser-Thr(7%),Pkinase(8%),Pkinase_C(100%) 2 1 10 10074 10275 ENST00000316891.10 ENST00000336199.9 upstream downstream duplicates(1),mismatches(5) TCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAG...TTACAGCTCAGACTATTACAATAACACCACCTGAAAAAT___ATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCC SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|VLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSSDAKSLLSGLLI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19720 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545597:- chr1:243651535-244014381:- chr1:243708899:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(6%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%),Pkinase_C(100%) 0 1 8 10074 12451 ENST00000316891.10 ENST00000336199.9 upstream downstream duplicates(2),mismatches(3) GTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|CCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAG___CTTGTACCTCCTTTTAAACCTCAAGTAACAT VAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|pwwrtr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19721 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243512426:- chr1:243651535-244014381:- chr1:243675728:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Protein_kinase_C_terminal_domain(100%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),Pkinase_C(100%) 3 0 5 10074 9567 ENST00000316891.10 ENST00000673466.1 upstream downstream duplicates(2),mismatches(2) GTCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGCAG|CTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAAT___ATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCCTACTCTGCAAG SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|LVPPFKPQVTSETDTRYFDEEFTAQTITITPPEKYDEDGMDCMDNERRPHFPQFSYSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19722 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39853970:- chr1:40303782-40349183:- chr1:40319642:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243512426:- chr1:243651535-244014381:- chr1:243675728:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(29%)|Protein_kinase_C_terminal_domain(100%) AAA_33(100%),IPPT(81%),IPT(100%)|CCCAP(100%),Pkinase_C(100%) 0 1 6 12344 9567 ENST00000316891.10 ENST00000673466.1 upstream downstream duplicates(1),mismappers(1),mismatches(3) CCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG|CTTGTACCTCCTTTTAAA...CTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAAT___ATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCCTACTCTGCAAG RDKIPIVVGGTNYYIESLLWKVLVNTK|LVPPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19724 AKT3::TRIT1 ENSG00000117020.19::ENSG00000043514.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3394 TRUE 1289 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243563720:- chr1:243651535-244014381:- chr1:243727022:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none PH_domain(100%),Protein_kinase_domain(65%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) Kinase-like(45%),PH(100%),PK_Tyr_Ser-Thr(80%),Pkinase(80%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 2 9488 8296 ENST00000336199.9 ENST00000316891.10 upstream downstream duplicates(1) CTGTGGCACTCCAGAATATCTGGCACCAGAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACA...TGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG___CCCCAGGAGATGGGCA CGTPEYLAPE|VYEGLDIITNKVSAQEQRICRHH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19725 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243505334:- chr1:243651535-244014381:- chr1:243668636:- chr1:39870774 chr1:243815950 NA NA chr1:40336446 chr1:243979252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none IPP_transferase(0%)|Protein_kinase_C_terminal_domain(45%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(100%),Pkinase_C(0%) 1 0 2 10074 8001 ENST00000316891.10 ENST00000673466.1 upstream downstream mismatches(2) GTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|ATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGC...GAAAAgGATTCCTGGACATCACCAGTCCTAGCTCTTACACATAGCAGGGGCACCTTCCGACATCCCAGACCAGCCAAGGGTCCTCACCCCTCGCCACCTTTCACCCTCATGAAAACACAC VAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|mmrmvwtawtmrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19726 AKT3::TRIT1 ENSG00000117020.19::ENSG00000043514.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3394 TRUE 1289 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664772:- chr1:243651535-244014381:- chr1:243828074:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none PH_domain(89%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) PH(90%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 1 13798 8296 ENST00000336199.9 ENST00000492612.6 upstream downstream none AGAGAACATTTCATGTAGATACTCCAGAGGAAAG|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACC...AATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG___GAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTaCTCCATCGTCAACATAC RTFHVDTPEEr|smka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19727 AKT3::TRIT1 ENSG00000117020.19::ENSG00000043514.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3394 TRUE 1289 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none PH_domain(51%)|IPP_transferase(99%),Zinc-finger_double-stranded_RNA-binding(100%) PH(74%)|IPPT(28%),IPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 1 0 1 13222 8296 ENST00000336199.9 ENST00000316891.10 upstream downstream duplicates(1) ATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGG...ATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTG VDLPYPLNNFSVA|sl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19728 AKT3::TRIT1 ENSG00000117020.19::ENSG00000043514.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3394 TRUE 1289 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39847297:- chr1:40303782-40349183:- chr1:40312969:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none PH_domain(51%)|IPP_transferase(8%),Zinc-finger_double-stranded_RNA-binding(100%) PH(74%)|IPPT(0%),zf-C2H2_jaz(100%),zf-met(100%) 0 1 0 13222 11576 ENST00000336199.9 ENST00000316891.10 upstream downstream none GATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GTATTGAGGCTCTGAAACAAGTAACTAAGAGATATGCCCGGAAACAAAACCGATGGGTTAAAAA...GGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAATCGTGCAAAGTTTCAT DLPYPLNNFSVA|sIEALKQVTKRYARKQNRWVK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19729 AKT3::TRIT1 ENSG00000117020.19::ENSG00000043514.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3394 TRUE 1289 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- chr1:243751172 chr1:39864033 NA NA chr1:243914474 chr1:40329705 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none PH_domain(9%)|IPP_transferase(35%),Zinc-finger_double-stranded_RNA-binding(100%) PH(0%)|IPPT(2%),zf-C2H2_jaz(100%),zf-met(100%) 0 0 0 10643 11742 ENST00000336199.9 ENST00000316891.10 upstream downstream mismatches(1) AGAAGGTTGGGTTCAGAAGAGGG|TTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAG___CCAGG EGWVQKR|vLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19730 TRIT1::AKT3 ENSG00000043514.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3393 TRUE 1288 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39853970:- chr1:40303782-40349183:- chr1:40319642:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243613739:- chr1:243651535-244014381:- chr1:243777041:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none IPP_transferase(29%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(76%) AAA_33(100%),IPPT(81%),IPT(100%)|CCCAP(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(73%),Pkinase(73%),Pkinase_C(100%) 0 0 0 12344 10640 ENST00000316891.10 ENST00000336199.9 upstream downstream mismatches(1) ATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAG|TCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTT...TATGGTGCAGAAAgTGgCTCTGtCTTtGACTtTCTtCATTCCGGAAAGATTGTGTACCGTGATCTCAAG___TTGGAGAtTCTAATGCTGGACAAAGATGGCCA YIESLLWKVLVNTK|SLKYSFQTKDRLCFVMEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19732 TRIT1::TSNAX ENSG00000043514.17::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1850 FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|Translin_family(66%) AAA_33(0%),IPPT(0%),IPT(0%)| 5 0 8 10074 683 ENST00000316891.10 ENST00000366639.9 upstream upstream duplicates(1) GTCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACT___CCCTCCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTACCTTCTGGGAGTGGCTGACTTAACTGG SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|dyrnmwklslfntsskhdh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19734 DISC1::PBX1 ENSG00000162946.24::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DISC1 ENSG00000162946.24 protein_coding + + chr1:231626790-232041272:+ chr1:231626834:+ chr1:231762536-232177018:+ chr1:231762580:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164827432:+ chr1:164524821-164868533:+ chr1:164796669:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR intron duplication medium none none none 0 10 1 8 17 ENST00000439617.8 ENST00000420696.7 downstream upstream duplicates(1) GCGGACTCGCTGAGGAGAAGAAAGGAGCCGCCCCCTTCGTCGCCAGCCCCCTCCCCACTTCCtGTCCAGCGCGCTGCTCCCTTCCCCCCGCCTCTGGCCTCGGGGAAGGAGCAGGAGGCAGCC|CTGAGGGGTAAAGGTACCAAGGAAAATCGAGGGGTCTGAATGTGGCAGACCAGACTGTATAGTGTTTGAAGGCAGCAGAGATAGAGTAGATAGATGGAAGCTAACAGCCTCACTTTCCTTCATGACAAAACTATTGGGAAACAGA___GCTAATGGAGGTTGGCAGGATGCTACTACCCCTTCATCAGTGACCTCCCCTACAGAAGGCCCTGGCAGTGTTCACTCTGATACCTCCAACTGATCTCCCAGCAATCGCATCCCGGCTGACCCTGTGCCCCAGTTGGGGCAGGGGCAGGAGGGAGGGTTTCTCTCCCAACGCTG...AAGAGTCTCCTTCTCTTCTCTTCTTTGGGATGCTATTTaAGCCAATCTGGACtCTTCTTTATACTCTCTTCCCTTTTTTTTCTGGGTAGAAGCCACCCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 19736 TRIT1::TSNAX-DISC1 ENSG00000043514.17::ENSG00000270106.6 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231561128:+ chr1:231664399-231954990:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)| AAA_33(0%),IPPT(0%),IPT(0%)|Translin(69%) 5 0 6 10074 683 ENST00000316891.10 ENST00000602567.1 upstream upstream duplicates(1) GTCCGTGGCGGCTGCACGAGCAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACT___CCCTCCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTACCTTCTGGGAGTGGCTGACTTAACTGG SVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|dyrnmwklslfntsskhdh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19743 AKT3::ASTN1 ENSG00000117020.19::ENSG00000152092.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- ASTN1 ENSG00000152092.16 protein_coding - + chr1:176857302-177164973:- chr1:177035700:+ chr1:176826438-177134109:- chr1:177004836:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none PH_domain(9%)| PH(0%)| 3 3 1 10643 36 ENST00000673466.1 unknown upstream upstream duplicates(2),mismatches(1) GCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GTTCAGCCCCTTCCTTTTCTGATGAAAAAACCAAGGCTCAGAGAAACTACAGAACTAGACAGTGCAGAACTGGCTCTAGTCCCAGATCTTCC MSDVTIVKEGWVQKR|gsapsfsdektkaqrnyrtrqcrtgssprs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19745 TRIT1::SDCCAG8 ENSG00000043514.17::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3395 TRUE 1290 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243415702:+ chr1:243419336-243663393:+ chr1:243579004:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|Centrosomal_colon_cancer_autoantigen_protein_family(23%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(34%) 0 1 6 10074 1765 ENST00000316891.10 ENST00000366541.8 upstream upstream duplicates(2),mismatches(1) CAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGgGAGATCGTCAGCGCTGACTCCATGCAG|ACAGGAAAAAGATAGCATTCAGCAGAGCTTTAGCAAGGAAGCAAAGGCCCAAGCCCTTCAGGCCCAGCAAAGAGAGCAGGAGCTGACACAGAAGATACAGCAAATGGAGGCCCAGCATGACAAAACTG___AAAATGAACAGTATTTGTTGCTGACCTCCCAGAATACATTTTTGACAAAGTTAAAGGAAGAATGCTGTACATTAGCCAAGAA...ACAGAGAAGAAATGAAGAATTGGAGGAACAGTGTGTCCAGCATGGGAGAGTACATGAGACGATGAAGCAAAG___GCTAAGGCAGCTGGATAAGCACAGCCgGG VPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|tgkr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19746 TRIT1::SDCCAG8 ENSG00000043514.17::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3395 TRUE 1290 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243426427:+ chr1:243419336-243663393:+ chr1:243589729:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|Centrosomal_colon_cancer_autoantigen_protein_family(12%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(30%) 1 0 4 10074 4597 ENST00000316891.10 ENST00000366541.8 upstream upstream duplicates(2) CAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGG?GAGATCGTCAGCGCTGACTCCATGCAG|ATCTGAAATAGCTCAACTCAGTCAAGAAAAAAGGTATACATATGATAAATT VPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19747 TRIT1::SDCCAG8 ENSG00000043514.17::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3395 TRUE 1290 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243489014:+ chr1:243419336-243663393:+ chr1:243652316:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none IPP_transferase(0%)|Centrosomal_colon_cancer_autoantigen_protein_family(6%) AAA_33(0%),IPPT(0%),IPT(0%)|CCCAP(4%) 0 1 4 10074 6860 ENST00000316891.10 ENST00000366541.8 upstream upstream duplicates(2) CAGTTCCtGTGGGCAGTGGGCTCAGGGGCCTGCAACGGACCCTACCTCTTGTAGTGATTCTCGGGGCCACGGGCACCGGCAAATCCACGCTGGCGTTGCAGCTAGGCCAGCGGCTCGGCGGTGAGATCGTCAGCGCTGACTCCATGCAG|GCTAAGGCAGCTGGATAAGCACAGCCAGGCCACAGCCCAGCAGCTGGTGCAGCTCCTCAGCAAGCAGAACCAGCTTCTCCTGGAGAGGCAGAGCCTGTCGGAAGAGGTGGACCGGCTGCGGACCCAG___TTACCCAGCATGCCACAATCTGATTGCTGACCTGGATGGAACAG VPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQ|akaag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19749 TSNAX-DISC1::PBX1 ENSG00000270106.6::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231616720:+ chr1:231664399-231954990:+ chr1:231752466:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164827860:+ chr1:164524821-164868533:+ chr1:164797097:+ chr1:231626836,chr1:231626836,chr1:231626836,chr1:231626836,chr1:231626834,chr1:231626825,chr1:231626836,chr1:231626832 chr1:164827434,chr1:164827435,chr1:164827439,chr1:164827431,chr1:164827431,chr1:164827431,chr1:164827432,chr1:164827431 NA NA chr1:231762582,chr1:231762582,chr1:231762582,chr1:231762582,chr1:231762580,chr1:231762571,chr1:231762582,chr1:231762578 chr1:164796671,chr1:164796672,chr1:164796676,chr1:164796668,chr1:164796668,chr1:164796668,chr1:164796669,chr1:164796668 NA NA sense sense stop-codon 3'UTR intron duplication medium none none Translin(100%)| 1 1 4 15 20 ENST00000602567.1 unknown downstream upstream duplicates(2) CTGTTGACGACAGTATTGTTGGTGAAAGCAGCTCCAGTTCCACAACTTACGATCTGAGACATCGTGTGGCCATTCATGTACAGGCTTTCAGAACTGAGAGA...CAAGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAGAAGCTCCATCTGAAGACTTTTATA|CTTGAGGAATGAAGCTACATCATGGTACATCCAGGTCAAATTGGAGAAACTCTGATGTCAGTCAGGGTACATTTTCCCTTTTAGTCTCATTCAGCACTTTGTCTGGGATTGAATTTCCTGTTCCTAGAAGACTAGACCAAGGGAACTGACCAACTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 19752 NCSTN::AKT3 ENSG00000162736.18::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3396 FALSE NA NCSTN ENSG00000162736.18 protein_coding + + chr1:160343294-160358952:+ chr1:160344826:+ chr1:160313084-160328742:+ chr1:160314616:+ AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243512426:- chr1:243651535-244014381:- chr1:243675728:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Nicastrin_small_lobe(8%)|Protein_kinase_C_terminal_domain(100%) Ncstrn_small(0%)|CCCAP(100%),Pkinase_C(100%) 0 1 0 1060 9567 ENST00000459963.6 ENST00000673466.1 downstream downstream none CTCAACGCCACTCATCAGATTGGCTGCCAGT|CTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAAT___ATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGG LNATHQIGCQ|sctsf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19754 ENSG00000256500::MARK3 ENSG00000256500.6::ENSG00000075413.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3397 FALSE NA ENSG00000256500 ENSG00000256500.6 protein_coding + + chr14:103562962-103685924:+ chr14:103587364:+ chr14:104029299-104152261:+ chr14:104053701:+ MARK3 ENSG00000075413.19 protein_coding + + chr14:103385377-103503831:+ chr14:103448919:+ chr14:103851714-103970168:+ chr14:103915256:+ chr14:103612890,chr14:103612889 chr14:103433183,chr14:103433181 NA NA chr14:104079227,chr14:104079226 chr14:103899520,chr14:103899518 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Cytochrome_c_oxidase_assembly_factor_8(95%)|Kinase_associated_domain_1(100%),Protein_kinase_domain(81%),UBA/TS-N_domain(100%) DUF2315(18%)|KA1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(21%),Pkinase(21%),RIO1(100%),UBA(100%) 1 1 4 808 1088 ENST00000472726.3 ENST00000678179.1 downstream upstream none TGGTGGTCTTGCGGGCGGGGAAGAAGACCTTTCTCCCCCCTCTCTGCCGCGCCTTCGCCTGCCGCGGCTGTCAACTCGCTCCGGAGCGCGGCGCCGAGCGC...TTTTAGTAAG___GAAAAAGAAGAATTTATTCACTCAAGACTAAAAACTAAAGGCCTGGGCCTGAGAACTGAATCAG___GTCAGAAAGCAACATTGAATGCAGAAGAAATGGCGGACTTCTACAAGGAATTTTTAAGTAAAAATTTTCAGAAGCACATGTATTATAACAG|CTCTTCAGAGAAGTAAGAATAATGAAGATTTTAAATCATCCCAATATAG___TGAAGTTATTCGAAGTCATTGAAACTGAAAAAACACTCTACCTAATCATGGAATATGCAAGTGGAG FSKEKEEFIHSRLKTKGLGLRTESGQKATLNAEEMADFYKEFLSKNFQKHMYYNs|ssek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP/microtubule affinity-regulating kinase 3 CAMK CAMKL MARK P27448 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19756 DISC1::ENSG00000287856 ENSG00000162946.24::ENSG00000287856.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DISC1 ENSG00000162946.24 protein_coding + + chr1:231626790-232041272:+ chr1:231767269:+ chr1:231762536-232177018:+ chr1:231903015:+ ENSG00000287856 ENSG00000287856.1 protein_coding - + chr1:231363797-231528603:- chr1:231503152:+ chr1:231499543-231664349:- chr1:231638898:+ chr1:231770316,chr1:231770312 chr1:231465858,chr1:231465851 NA NA chr1:231906062,chr1:231906058 chr1:231601604,chr1:231601597 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 5 0 0 83 13 ENST00000439617.8 unknown downstream upstream duplicates(1) CTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGCCACTCAGCA___GGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAG|GTAAGACGTACCTTTCACCTTCTGCCAAGACTGTGAGGATTCTCCAGCCATGTGGAACTGTGAGTCC ETLQQRLEDLEQEKISLHFQLPSRQPALSSFLGHLAAQVQAALRRGATQQASGDDTHTPLRMEPRLLEPTAQDSLHVSITRRDWLLQEKQQLQ|vrrtfhllprl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19757 TSNAX-DISC1::ENSG00000287856 ENSG00000270106.6::ENSG00000287856.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231767269:+ chr1:231664399-231954990:+ chr1:231903015:+ ENSG00000287856 ENSG00000287856.1 protein_coding - + chr1:231363797-231528603:- chr1:231503152:+ chr1:231499543-231664349:- chr1:231638898:+ chr1:231770316,chr1:231770312 chr1:231465858,chr1:231465851 NA NA chr1:231906062,chr1:231906058 chr1:231601604,chr1:231601597 NA NA sense antisense unknown 3'UTR/splice-site intron duplication/5'-5' medium none none Translin(100%)| 5 0 0 83 13 ENST00000602567.1 unknown downstream upstream duplicates(1) CTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGCCACTCAGCA___GGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAG|GTAAGACGTACCTTTCACCTTCTGCCAAGACTGTGAGGATTCTCCAGCCATGTGGAACTGTGAGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19766 AKT3::TSNAX ENSG00000117020.19::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3399 TRUE 1291 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243664772:- chr1:243651535-244014381:- chr1:243828074:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(89%)|Translin_family(66%) PH(90%)| 0 1 2 13798 683 ENST00000336199.9 ENST00000366639.9 upstream upstream none GTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTAC...AGAGTCACACCTGTCGATTACCTTCTGGGAGTGGCTGACTTAACTGGAGAATTGATGCGGATGTGTATTAACAGTGTGGGGAATGGGGACATTGATACCCC WTTVIERTFHVDTPEEr|ttgicgsclfstlhqntiin* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19767 AKT3::TSNAX ENSG00000117020.19::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3399 TRUE 1291 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(51%)|Translin_family(66%) PH(74%)| 1 0 2 13222 683 ENST00000336199.9 ENST00000366639.9 upstream upstream none GTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTAC VTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVA|rLQEYVEAVSFQHFIKTRSLISMDEINKQLIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19768 AKT3::TSNAX ENSG00000117020.19::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3399 TRUE 1291 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)|Translin_family(66%) PH(0%)| 0 1 1 10643 683 ENST00000673466.1 ENST00000475168.1 upstream upstream mismatches(1) GTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTAC...TGGGAAAGAAAATAAAACT___ATGAGGAAACTGAGGTTTAGAGAGATGAAATAACTTGCCCAAGGGCATACACCTTATGAAGCAAGGTCCTGGAAGAGGTGGG MSDVTIVKEGWVQKR|glqeyveavsfqhfiktrslismdeinkqlif NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19769 AKT3::TSNAX ENSG00000117020.19::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3399 TRUE 1291 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243637611:- chr1:243651535-244014381:- chr1:243800913:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231564528:+ chr1:231664287-231702270:+ chr1:231700274:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(100%),Protein_kinase_domain(14%)|Translin_family(46%) PH(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 0 1 0 11380 706 ENST00000336199.9 ENST00000366639.9 upstream upstream none GCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAG|CCCTCCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACgCCTGTCGATTtCCTTCTGGGAGTGGCTGACTTAACTGGAGAATTGATGCGGATGTGTATTAACAG ASGKYYAMKILKKEVIIAK|PSSDAQDKQFGTWRLRVTPVDfLLGVADLTGELMRMCIN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19770 AKT3::TSNAX-DISC1 ENSG00000117020.19::ENSG00000270106.6 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3400 TRUE 1292 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231561128:+ chr1:231664399-231954990:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(51%)| PH(74%)|Translin(69%) 1 0 2 13222 683 ENST00000336199.9 ENST00000602567.1 upstream upstream none GTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG___GAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTAC VTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVA|rLQEYVEAVSFQHFIKTRSLISMDEINKQLIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19771 AKT3::TSNAX-DISC1 ENSG00000117020.19::ENSG00000270106.6 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3400 TRUE 1292 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231561128:+ chr1:231664399-231954990:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none PH_domain(9%)| PH(0%)|Translin(69%) 0 1 1 10643 683 ENST00000673466.1 ENST00000602567.1 upstream upstream mismatches(1) GTGGGAAGGGCAGCAGCAGCAGAGAATCCAAACCCTAAAGCTGATATCACAAAGTACCATTTCTCCAAGTTGGGGGCTCAGAGGGGAGTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|GACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTAC...TGGGAAAGAAAATAAAACT___ATGAGGAAACTGAGGTTTAGAGAGATGAAATAACTTGCCCAAGGGCATACACCTTATGAAGCAAGGTCCTGGAAGAGGTGGG MSDVTIVKEGWVQKR|gLQEYVEAVSFQHFIKTRSLISMDEINKQLIF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19772 AKT3::TSNAX-DISC1 ENSG00000117020.19::ENSG00000270106.6 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3400 TRUE 1292 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243645893:- chr1:243651535-244014381:- chr1:243809195:- TSNAX-DISC1 ENSG00000270106.6 protein_coding + + chr1:231528653-231819244:+ chr1:231616644:+ chr1:231664399-231954990:+ chr1:231752390:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none PH_domain(100%)| PH(100%)|Translin(0%) 1 0 0 12883 11 ENST00000336199.9 ENST00000602567.1 upstream upstream none GCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAG___GGAAGAATGGACAGAAGCTA...ATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAG|AAGTTTACAGGCAAGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGAC IGEEEMDASTTHHKRK|KFTGKILLTEALGIKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19774 NRG1::VAMP7 ENSG00000157168.22::ENSG00000124333.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NRG1 ENSG00000157168.22 protein_coding + + chr8:31639222-32855666:+ chr8:31640729:+ chr8:31496738-32713184:+ chr8:31498245:+ VAMP7 ENSG00000124333.16 protein_coding + + chrX:155881345-155943769:+ chrX:155939701:+ chrX:155111008-155173433:+ chrX:155169365:+ chr8:32121569 chrX:155933449 NA NA chr8:31979085 chrX:155163113 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Synaptobrevin(49%) none 1 0 1 25 309 ENST00000520407.5 ENST00000262640.11 downstream upstream none CTTCCCCTCCTGCGGGAGGCTCAAGGAGGACAGCAGGTACATCTTCTTCATGGAGCCCGACGCCAACAGCACCAGCCGCGCGCCGGCCGCCTTCCGAGCCTCTTTCCCCCCTCTGGAGACGGGCCGGAACCTCAAGAAGGAGGTCAGCCGGGTGCTGTGCAAGCGGTGCG|TCTGTCACCTTCAAAACTACCAGCAGAAATCTTGCTCGAGCCATGTGTATGAAGAACCTCAAGCTCACTATTATCATCATCATCGTATCAATT___GTGTTCATCTATATCATTGTTT FPSCGRLKEDSRYIFFMEPDANSTSRAPAAFRASFPPLETGRNLKKEVSRVLCKRC|vCHLQNYQQKSCSSHVYEEPQAHYYHHHRINCVHLYHC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE neuregulin 1 1 NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19778 AKT3::HEYL ENSG00000117020.19::ENSG00000163909.8 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3402 TRUE 1293 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695591:- chr1:243651535-244014381:- chr1:243858893:- HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39632715:- chr1:40089107-40105315:- chr1:40098387:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion medium none PH_domain(51%)|Hairy_Orange(100%),Helix-loop-helix_DNA-binding_domain(100%) PH(74%)|HLH(100%),Hairy_orange(100%) 1 0 1 13222 321 ENST00000672578.1 ENST00000372852.4 upstream downstream none CCCCGCCCCCCCCCGGCTCCATCCTCCGCCGCCGCCCGAGCAGCTGCGGGGCCGCCACCGCCGCCGCCGCCGTTGCAG___GAGAATATATAAAAAACTGGAGG...ACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAA|CCAGATGGCCAGGCCGCTGTCCACCCCCAGCTCTTCGCAGATGCAAGCCAGGAAGAAACgCAGAGGGGTGAGTGTCCGTCTCAGCCTCTGAGTTGACCAACAAAGGGTTGCCATGAATCCCCTGCAGTCTGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19779 AKT3::HEYL ENSG00000117020.19::ENSG00000163909.8 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3402 TRUE 1293 AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243843125:- chr1:243651535-244014381:- chr1:244006427:- HEYL ENSG00000163909.8 protein_coding - - chr1:39623435-39639643:- chr1:39632715:- chr1:40089107-40105315:- chr1:40098387:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none PH_domain(9%)|Hairy_Orange(100%),Helix-loop-helix_DNA-binding_domain(100%) PH(0%)|HLH(100%),Hairy_orange(100%) 0 1 0 10643 321 ENST00000336199.9 ENST00000372852.4 upstream downstream none GTCATCATGAGCGATGTTACCATTGTGAAAGAAGGTTGGGTTCAGAAGAGGG|CCAGATGGCCAGGCCGCTGTCCACCCCCAGCTCTTCGCAGATGCAAGCC...CGCATCAACAGTAGCCTTTCTGAATTGCGACGCTTGGTCCCCACTGCCTTTGAGAAACAG___GGCTCTTCCAAGCTGGAGAAAGCCGAGGTCTTGCAGATGAC MSDVTIVKEGWVQKR|arwpgrcpppalrrck NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19781 AKT3::C1orf198 ENSG00000117020.19::ENSG00000119280.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243637611:- chr1:243651535-244014381:- chr1:243800913:- C1orf198 ENSG00000119280.17 protein_coding - - chr1:230837119-230869589:- chr1:230855718:- chr1:230972865-231005335:- chr1:230991464:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none PH_domain(100%),Protein_kinase_domain(14%)|Domain_of_unknown_function_(DUF4706)(22%) PH(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%)|DUF4706(48%) 0 1 1 11380 11949 ENST00000336199.9 ENST00000470540.5 upstream downstream none GTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAG|GATCTAACTTGGCAAGATGAGCACTCTGCCCC...ACTGTCCAAAGCTTCCCAGGGCTCCCAGGCCCTCAAGTCCTCCCAAGGCAGCAGGTCCTCCAGCCTGGACGCCCTGGGCCCCACCAGGAAGGAGGAGGAAG VREKASGKYYAMKILKKEVIIAK|DLTWQDEHSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 19782 C1orf198::AKT3 ENSG00000119280.17::ENSG00000117020.19 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3403 FALSE NA C1orf198 ENSG00000119280.17 protein_coding - - chr1:230837119-230869589:- chr1:230868180:- chr1:230972865-231005335:- chr1:231003926:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243505334:- chr1:243651535-244014381:- chr1:243668636:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Domain_of_unknown_function_(DUF4706)(77%)|Protein_kinase_C_terminal_domain(45%) DUF4706(0%)|CCCAP(100%),Pkinase_C(0%) 0 0 0 10759 8001 ENST00000366663.10 ENST00000673466.1 upstream downstream mismatches(1) CGGGCATGGCGTCCATGGCGGCGGCGATCGCGGCTTCGCGCTCGGCGGTCATGAGCGGGAACCGGCCTCTGGACGACCGGGAGCGAAAGCGCTTCACTTAC...GGgCTCGGAGGAGCTCACGCGCTTCCCCGGCTTGCGCGGGCCCACGGGCCAGAAGGTGGTGCGCTTCGGGGACGAG|ATGATGAGGATGGTATGGACTGCAT gSEELTRFPGLRGPTGQKVVRFGDE|mmrmvwta NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 19800 ASTN1::TSNAX ENSG00000152092.16::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ASTN1 ENSG00000152092.16 protein_coding - - chr1:176857302-177164973:- chr1:177014791:- chr1:176826438-177134109:- chr1:176983927:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |Translin_family(66%) ASTN_1_2_N(69%)| 1 0 1 16 683 ENST00000367657.7 ENST00000366639.9 upstream upstream none GCCGCTTCATCTTGCTGGAGGGGAGCCAGCTGGATGCCAGTGACTGGCTGAACCCTGCCCAAGTGGTTCTCTTCTCTCAGCAGAACTCCAGCGGACCCTGGGCCATGGACCTCTGTGCCCGGCGGCTCCTGGACCCCTGTGAACACCAATGcGACCCCGAAACTG___GGGAATGCCTCTGCTATGAAGGCTACATGAAGGATCCAGTACATAAGCACCTTTGCATTCGGAACGAATGGGGGACAAACCAGGG|GACTACAGGAATATGTGGAAGCTGTCTCTTTT RFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQg|ttgicgsclf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-488 chr1:177029363-177029445:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19808 KRIT1::COG5 ENSG00000001631.17::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1851 TRUE 3407 TRUE 1294 KRIT1 ENSG00000001631.17 protein_coding - - chr7:92197498-92246166:- chr7:92234449:- chr7:91826812-91875480:- chr7:91863763:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none NUDIX__or_N-terminal_NPxY_motif-rich___region_of_KRIT(100%)| Ank(0%),Ank_2(1%),Ank_4(0%),NUDIX_5(100%)| 18 13 18 346 246 ENST00000394507.5 ENST00000297135.9 upstream downstream duplicates(3),low_entropy(2),mismatches(3) CAAAAATCCAAATACCTAAACAGGAAAAATGGCAGAGAAGCATGAGCAGTGTCACAGAAGACAA___GGAACGACAGTGGGTAGATGATTTTCCTCTCCACCGAAGCGCCTGTGAAGGAGATTCAGAATTACTAAGCCGTCTTCTCAGTGAAAGATTTTCAGTCAACCAGTTAGATAGTGACCACTGGGCACCCATTCATTATGCATGCTG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA KIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGDSELLSRLLSERFSVNQLDSDHWAPIHYACc|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19809 KRIT1::COG5 ENSG00000001631.17::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3407 TRUE 1294 KRIT1 ENSG00000001631.17 protein_coding - - chr7:92197498-92246166:- chr7:92234808:- chr7:91826812-91875480:- chr7:91864122:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none NUDIX__or_N-terminal_NPxY_motif-rich___region_of_KRIT(100%)| NUDIX_5(100%)| 3 1 9 463 246 ENST00000394507.5 ENST00000297135.9 upstream downstream mismatches(2) CTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTGTTTGGATCAGATCTTCAGTATACAAATCGG___GTAGATAAAGTGGTAATAAATCCATACTTTGGTCTAGGAGCTCCAGACTACTCAAAAATCCAAATACCTAAACAGGAAAAATGGCAGAGAAGCATGAGCAGTGTCACAGAAGACAA|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACC ESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQYTNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDn|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19810 KRIT1::COG5 ENSG00000001631.17::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3407 TRUE 1294 KRIT1 ENSG00000001631.17 protein_coding - - chr7:92197498-92246166:- chr7:92235403:- chr7:91826812-91875480:- chr7:91864717:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none NUDIX__or_N-terminal_NPxY_motif-rich___region_of_KRIT(100%)| NUDIX_5(100%)| 0 1 6 301 246 ENST00000394507.5 ENST00000297135.9 upstream downstream mismatches(1) CAAGGATGTTAATAGCCTTGGATAA___GTGGTTAGATGAACGTCATGCACAATCTCACTTTATTCCAGCTTTATTCCGACCTTCTCCTCTTGAGCGGATAAAAACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTG...CTTCAGTATACAAATCGG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA___TCCAGAAAAGGCTTTGAAAGACTCACTACAACCCTATGAGGCTGC LQYTNR|lrcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19811 ENSG00000289027::COG5 ENSG00000289027.1::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3408 TRUE 1295 ENSG00000289027 ENSG00000289027.1 protein_coding - - chr7:92112176-92245924:- chr7:92234449:- chr7:91741490-91875238:- chr7:91863763:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none Ank(0%),Ank_2(1%),Ank_4(0%),NUDIX_5(100%)| 17 13 15 346 246 ENST00000692281.1 ENST00000297135.9 upstream downstream duplicates(3),low_entropy(1),mismatches(4) CAAAAATCCAAATACCTAAACAGGAAAAATGGCAGAGAAGCATGAGCAGTGTCACAGAAGACAA___GGAACGACAGTGGGTAGATGATTTTCCTCTCCACCGAAGCGCCTGTGAAGGAGATTCAGAATTACTAAGCCGTCTTCTCAGTGAAAGATTTTCAGTCAACCAGTTAGATAGTGACCACTGGGCACCCATTCATTATGCATGCTG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA KIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGDSELLSRLLSERFSVNQLDSDHWAPIHYACc|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19812 ENSG00000289027::COG5 ENSG00000289027.1::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3408 TRUE 1295 ENSG00000289027 ENSG00000289027.1 protein_coding - - chr7:92112176-92245924:- chr7:92234808:- chr7:91741490-91875238:- chr7:91864122:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none NUDIX_5(100%)| 3 1 6 463 246 ENST00000692281.1 ENST00000297135.9 upstream downstream mismatches(3) CTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTGTTTGGATCAGATCTTCAGTATACAAATCGGGT...AATAAATCCATACTTTGGTCTAGGAGCTCCAGACTACTCAAAAATCCAAATACCTAAACAGGAAAAATGGCAGAGAAGCATGAGCAGTGTCACAGAAGACAA|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACC INPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDn|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19813 ENSG00000289027::COG5 ENSG00000289027.1::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3408 TRUE 1295 ENSG00000289027 ENSG00000289027.1 protein_coding - - chr7:92112176-92245924:- chr7:92235403:- chr7:91741490-91875238:- chr7:91864717:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none NUDIX_5(100%)| 0 1 6 301 246 ENST00000692281.1 ENST00000297135.9 upstream downstream mismatches(2) CAAGGATGTTAATAGCCTTGGATAA___GTGGTTAGATGAACGTCATGCACAATCTCACTTTATTCCAGCTTTATTCCGACCTTCTCCTCTTGAGCGGATAAAAACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTG...CTTCAGTATACAAATCGG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA___TCCAGAAAAGGCTTTGAAAGACTCACTACAACCCTATGAGGCTGC LQYTNR|lrcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19814 ENSG00000285953::COG5 ENSG00000285953.2::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3409 TRUE 1296 ENSG00000285953 ENSG00000285953.2 protein_coding - - chr7:92144723-92245943:- chr7:92234449:- chr7:91774037-91875257:- chr7:91863763:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none Ank(0%),Ank_2(1%),Ank_4(0%),NUDIX_5(100%)| 10 13 6 346 246 ENST00000458493.6 ENST00000297135.9 upstream downstream duplicates(3),low_entropy(1),mismatches(3) GTAGATGATTTTCCTCTCCACCGAAGCGCCTGTGAAGGAGATTCAGAATTACTAAGCCGTCTTCTCAGTGAAAGATTTTCAGTCAACCAGTTAGATAGTGACCACTGGGCACCCATTCATTATGCATGCTG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA VDDFPLHRSACEGDSELLSRLLSERFSVNQLDSDHWAPIHYACc|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19815 ENSG00000285953::COG5 ENSG00000285953.2::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3409 TRUE 1296 ENSG00000285953 ENSG00000285953.2 protein_coding - - chr7:92144723-92245943:- chr7:92234808:- chr7:91774037-91875257:- chr7:91864122:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none NUDIX_5(100%)| 3 1 4 463 246 ENST00000458493.6 ENST00000297135.9 upstream downstream mismatches(2) CTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTGTTTGGATCAGATCTTCAGTATACAAATCGGGT...AATAAATCCATACTTTGGTCTAGGAGCTCCAGACTACTCAAAAATCCAAATACCTAAACAGGAAAAATGGCAGAGAAGCATGAGCAGTGTCACAGAAGACAA|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAG INPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDn|fdvfeagi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19816 ENSG00000285953::COG5 ENSG00000285953.2::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3409 TRUE 1296 ENSG00000285953 ENSG00000285953.2 protein_coding - - chr7:92144723-92245943:- chr7:92235403:- chr7:91774037-91875257:- chr7:91864717:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none NUDIX_5(100%)| 0 1 4 301 246 ENST00000458493.6 ENST00000297135.9 upstream downstream mismatches(1) ACTAATGTCATAAATCCTGCATATGCTACTGAATCAGGTCAGACAGAAAACTCACTACATATGGGCTATAGTGCACTAGAAATAAAGAGTAAAATGTTAGCCCTAGAGAAAGCAGATACCTGTATTTACAACCCTTTG...CTTCAGTATACAAATCGG|CTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGA___TCCAGAAAAGGCTTTGAAAGACTCACTACAACCCTATGAGGCTGC LQYTNR|lrcf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19817 SCFD2::ENSG00000287999 ENSG00000184178.17::ENSG00000287999.1 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3410 TRUE 1297 SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53273826:- chr4:53739149-54232233:- chr4:54139993:- ENSG00000287999 ENSG00000287999.1 lncRNA - - chr4:52252820-52551574:- chr4:52345751:- chr4:53118986-53417740:- chr4:53211917:- chr4:53182362,chr4:53182375,chr4:53182375 chr4:52350477,chr4:52350480,chr4:52350479 NA NA chr4:54048529,chr4:54048542,chr4:54048542 chr4:53216643,chr4:53216646,chr4:53216645 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Sec1_family(19%)| Sec1(0%)| 1 1 11 106 7 ENST00000401642.8 unknown upstream downstream mismappers(1) AAAACCTGCCAATCAAGATGAGTATGG___GGAGAGTCACACCGGGACAGCTCATGTCCTATATTCAGCTCTTCAAGAACAACCTCAAAGCTCTAATGAATCATTGTGGCCTCCTCCAGCTTGGACTGGCCACAGCTCAAACGTTGAAACACCCACAGACTGCCAAGTGGGACAACTTTCTGGCTTTTGAAAGGCTCCTTCTTCAG|ATATCACCTTTTGTCAGAACTTGGCGTTATGAATGACCTTCACCATACCAACACTCTCTGACTGAGCTTCTCTCTACCCTGAATGCAAGAGAACCTAATAGTTAGGCAGGAATATCATCGCCCCCATTCAGCCTGAAGAAGTTACAGAAGATGGATCTTCA NLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQ|ispfvrtwrye* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19818 SCFD2::ENSG00000287999 ENSG00000184178.17::ENSG00000287999.1 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3410 TRUE 1297 SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53273826:- chr4:53739149-54232233:- chr4:54139993:- ENSG00000287999 ENSG00000287999.1 lncRNA - - chr4:52252820-52551574:- chr4:52253344:- chr4:53118986-53417740:- chr4:53119510:- chr4:53182362,chr4:53182375,chr4:53182375 chr4:52350477,chr4:52350480,chr4:52350479 NA NA chr4:54048529,chr4:54048542,chr4:54048542 chr4:53216643,chr4:53216646,chr4:53216645 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Sec1_family(19%)| Sec1(0%)| 0 2 1 106 8 ENST00000401642.8 ENST00000660768.1 upstream downstream none AAAACCTGCCAATCAAGATGAGTATGG___GGAGAGTCACACCGGGACAGCTCATGTCCTAaATTCAGCTCTTCAAGAACAACCTCAAAGCTCTAATGAATCAT...CAGCTTGGACTGGCCACAGCTCAAACGTTGAAACACCCACAGACTGCCAAGTGGGACAACTTTCTGGCTTTTGAAAGGCTCCTTCTTCAG|GTTTTTCTCCAAAGGCTAAACAGAAATCGGTCCTTTCAAAAGACTTCACCACTGATATCAACCAACCTCCTGCCACTTCTCCTCTCTTCTGTGGTTTGGACACAGCTGACC QLGLATAQTLKHPQTAKWDNFLAFERLLLQ|vflqrlnrnrsfqktsplistnllplllssvvwtql NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19819 NUTM2A-AS1::LINC00863 ENSG00000223482.10::ENSG00000224914.4 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUTM2A-AS1 ENSG00000223482.10 lncRNA - - chr10:87189773-87342612:- chr10:87246115:- chr10:88949530-89102369:- chr10:89005872:- LINC00863 ENSG00000224914.4 lncRNA + - chr10:87341685-87357882:+ chr10:87350997:- chr10:89101442-89117639:+ chr10:89110754:- chr10:87223055 chr10:87355277 NA NA chr10:88982812 chr10:89115034 NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 1 1 5 494 20 ENST00000451940.6 unknown upstream downstream mismappers(1),mismatches(2) GCCTCCACCCAGGCGCATGGCTCCATGAAGCAAGAGGAGGAGGCAGAGCGCGAGAGATCCCGTCCGCCCCAGCCGCGTCTGGGCCAGGAGAAAAG___CAAAAC...GAGAAGCTTTACTGGTGTTCCAGCCCTAAG___GCTCATATaACATTAACAGACAAGACACTTTTCAGAAAGACAG___GCAACGTGTTGGACCTTCCGGAGCTTCTCAGAAGACAGAGGGTTTTCTTTTGAG___GCTGTTGTACAGTGGCCTGATTATAGCTCACTGTAGCCTCGAAATTCTGGGCCGAAATGATCCGCCTGCCTCAGCCTCCAAAGTAGCTGAGACTACAG|ATGGAGCATCGCTCTGTTGCCCAGGCTGGAGTATGGTGGCGCGATCTGGGCTCACTGAAACCTCTGTCTCCCGGGTTCAAGCGACTCTCCTACCTCAGCCTCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19820 CDC14B::LINC02745 ENSG00000081377.17::ENSG00000255300.6 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CDC14B ENSG00000081377.17 protein_coding - - chr9:96490241-96619843:- chr9:96619219:- chr9:99252523-99382125:- chr9:99381501:- LINC02745 ENSG00000255300.6 lncRNA - + chr11:41993381-42163851:- chr11:42066937:+ chr11:42014931-42185401:- chr11:42088487:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none Dual_specificity_protein_phosphatase__N-terminal_half(1%)| DSPn(0%)| 1 1 1 33 3 ENST00000474602.5 unknown upstream upstream none CGGGCCGCGGCCGCCTCCATGAAGCGGAAAAGCGAGCGGCGGTCGAGCTGGGCCGCCGCGCCCCCCTGCTCGCGGCGCTGCTCGTCGACCTCGCCGGGTGTGAAGAAGATCCGCAGCTCCACGCAGCAAGACCCGCGCCGCCGGGACCCCCAGGACGACGTGTACCTGGACATCACCG|AACATGTCTATCACTATTTTGGCTGACAGAGTAGCTTCGATATAGAACATTTCTCATCTCGTAGAAGAAGA MKRKSERRSSWAAAPPCSRRCSSTSPGVKKIRSSTQQDPRRRDPQDDVYLDIT|ehvyhyfg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19856 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1852 TRUE 3418 TRUE 1298 MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97979008:+ chr8:98881068-99048952:+ chr8:98991236:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97988698,chr8:97988692 chr8:98075126,chr8:98075117 NA NA chr8:99000926,chr8:99000920 chr8:99087354,chr8:99087345 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(40%),von_Willebrand_factor_type_A_domain(49%)|Domain_of_unknown_function_(DUF4573)(100%) EGF_CA(40%),FXa_inhibition(41%),VWA(12%),VWA_2(41%),cEGF(13%),hEGF(40%)|DUF4573(100%) 154 84 151 633 1194 ENST00000254898.7 ENST00000318528.8 downstream upstream duplicates(126),mismappers(9),mismatches(18) TGTGCCGGGCTCCTTCGTCTGCCAGTGCTACAGTGGCTACGCCCTGGCTGAGGATGGGAAGAGGTGTGTGG___CTGTGGACTACTGTGCCTCAGAAAACCACGGATGTGAACATGAGTGTGTAAATGCTGATGGCTCCTACCTTTGCCAGTGCCATGAAGGATTTGCTCTTAACCCAGATAAAAAAACGTGCACAA|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTcATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGC VPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCT|iTSNEHFSTAEESESCFAQPKPHALGRESTVhGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19857 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3418 TRUE 1298 MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97961530:+ chr8:98881068-99048952:+ chr8:98973758:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97988698,chr8:97988692 chr8:98075126,chr8:98075117 NA NA chr8:99000926,chr8:99000920 chr8:99087354,chr8:99087345 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(20%),von_Willebrand_factor_type_A_domain(49%)|Domain_of_unknown_function_(DUF4573)(100%) EGF_CA(18%),FXa_inhibition(21%),VWA(12%),VWA_2(41%),cEGF(0%),hEGF(10%)|DUF4573(100%) 0 2 25 765 1194 ENST00000254898.7 ENST00000318528.8 downstream upstream duplicates(3),mismatches(2) GCCCACTTCTGCATCAACATCCCTGGCTCATACGTCTGCAGGTGCAAACAAGGCTACATTCTCAACTCGGATCAGACGACTTGCAGAA___TCCAGGATCTGTGTGCCATGGAGGACCACAACTGTGAGCAGCTCTGTGTGAATGTGCCGGGCTCCTTCGTCTGCCAGTGCTACAGTGGCTACGCCCTGGCTGAGGATGGGAAGAGGTGTGTGG|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTcATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAG AHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCV|vTSNEHFSTAEESESCFAQPKPHALGRESTVhGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQPGEGL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19858 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3418 TRUE 1298 MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97979008:+ chr8:98881068-99048952:+ chr8:98991236:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98093221:+ chr8:99076750-99105838:+ chr8:99105449:+ chr8:97988698,chr8:97988692 chr8:98075126,chr8:98075117 NA NA chr8:99000926,chr8:99000920 chr8:99087354,chr8:99087345 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Calcium-binding_EGF_domain(48%),Coagulation_Factor_Xa_inhibitory_site(40%),von_Willebrand_factor_type_A_domain(49%)| EGF_CA(40%),FXa_inhibition(41%),VWA(12%),VWA_2(41%),cEGF(13%),hEGF(40%)| 5 0 3 633 1008 ENST00000254898.7 ENST00000545282.1 downstream upstream duplicates(2) GTGCCGGGCTCCTTCGTCTGCCAGTGCTACAGTGGCTACGCCCTGGCTGAGGATGGGAAGAGGTGTGTGG___CTGTGGACTACTGTGCCTCAGAAAACCACGGATGTGAACATGAGTGTGTAAATGCTGATGGCTCCTACCTTTGCCAGTGCCATGAAGGATTTGCTCTTAACCCAGATAAAAAAACGTGCACAA|GTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAGATAGAAGAGTGAACCGACACAGTGTGTTATCATAGAGGAGACAAAAATGGTAGTGAAGCTTGTGGTTATGTATCTTATCTTTCTACATTTACATGTTTTCTGTAAGGAGTGTGGTTATAGAGAGACTGTTGGAACCATGAGAAG VPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCT|sETGEKVETDMENEKVSEGAETKEEETGEVVDLSAAT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19859 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3418 TRUE 1298 MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97941899:+ chr8:98881068-99048952:+ chr8:98954127:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97988698,chr8:97988692 chr8:98075126,chr8:98075117 NA NA chr8:99000926,chr8:99000920 chr8:99087354,chr8:99087345 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Coagulation_Factor_Xa_inhibitory_site(20%),von_Willebrand_factor_type_A_domain(49%)|Domain_of_unknown_function_(DUF4573)(100%) EGF_CA(8%),FXa_inhibition(12%),VWA(12%),VWA_2(41%),hEGF(10%)|DUF4573(100%) 1 0 6 508 1194 ENST00000254898.7 ENST00000318528.8 downstream upstream mismatches(1) CTTGTGGCCAATTTCAGCCAGATTGAGACGCTGACCTCCGTGTTCCAGAAGAAGTTGTGCA___CGGCCCAcATGTGCAGCACCCTGGAGCATAACTGTGCCCACTTCTGCATCAACATCCCTGGCTCATACGTCTGCAGGTGCAAACAAGGCTACATTCTCAACTCGGATCAGACGACTTGCAGAA|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTcATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAG LVANFSQIETLTSVFQKKLCTAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCR|iTSNEHFSTAEESESCFAQPKPHALGRESTVhGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19861 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1853 TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98044943:- chr8:99037079-99058697:- chr8:99057171:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family(46%)|Domain_of_unknown_function_(DUF4573)(100%) Ribosomal_L7Ae(4%)|DUF4573(100%) 82 75 133 8828 1194 ENST00000287038.8 ENST00000318528.8 upstream upstream duplicates(90),mismatches(13) GGCCATCTTAGCGGCTGCTGTTG___GTTGGGGGCCGTCCCGCTCCTAAGGCAGGAAGATGGTGGCCGCAAAGAAGACG___AAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTCGTTATGAAAAGTGGGAAGTACGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCATTCTCGCTAACAACTGCCCAGCTTTGAG|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAG MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALs|nfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19862 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1854 TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98045347:- chr8:99037079-99058697:- chr8:99057575:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Domain_of_unknown_function_(DUF4573)(100%) |DUF4573(100%) 10 256 12 9449 1194 ENST00000518850.5 ENST00000318528.8 upstream upstream duplicates(70),mismatches(7) CGGCCATCTTAGCGGCTGCTGTTG___GTTGGGGGCCGTCCCGCTCCTAAGGCAGGAAGATGGTGGCCGCAAAGAAGACG|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAGGAATCTGG MVAAKKT|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19863 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98044827:- chr8:99037079-99058697:- chr8:99057055:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion medium none Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family(46%)|Domain_of_unknown_function_(DUF4573)(100%) Ribosomal_L7Ae(7%)|DUF4573(100%) 0 1 134 110 1194 ENST00000518850.5 ENST00000318528.8 upstream upstream duplicates(41),mismatches(10) GGAAGATGGTGGCCGCAAAGAAGACG___AAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTCGTTATGAAAAGTGGGAAGTACGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCATTCTCGCTAACAACTGCCCAGCTTTGAGGT...CTTaGCCTACCGCGAATTCATCGTGAACGAATATACAGGAGTGTAAACTTGTAATCTGAGTACCATGAACTCGAACACTTGCAGGATAATTACG|TAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19864 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98045347:- chr8:99037079-99058697:- chr8:99057575:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98093221:+ chr8:99076750-99105838:+ chr8:99105449:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none none none 3 14 1 9449 1008 ENST00000518850.5 ENST00000545282.1 upstream upstream duplicates(7) CGGCCATCTTAGCGGCTGCTGTTG___GTTGGGGGCCGTCCCGCTCCTAAGGCAGGAAGATGGTGGCCGCAAAGAAGACG|GTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAGATAGAAGAGTGAACCGACACAGTGTGTTATCATAGAGGAGACAAAAATGGTAGTGAAGCTTGTGGTTATGTATCTTATCTTTCTACATTTACATGTTTTCTGTAAGGAGTGTGGTTATAGAGAGACTGTTGGAACCATGAGAA MVAAKKT|vrqgkrwkqtwrmrk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19865 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98044943:- chr8:99037079-99058697:- chr8:99057171:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98093221:+ chr8:99076750-99105838:+ chr8:99105449:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Ribosomal_protein_L7Ae/L30e/S12e/Gadd45_family(46%)| Ribosomal_L7Ae(4%)| 3 0 7 8828 1008 ENST00000287038.8 ENST00000545282.1 upstream upstream duplicates(3),mismatches(2) GCCATCTTAGCGGCTGCTGTTG___GTTGGGGGCCGTCCCGCTCCTAAGGCAGGAAGATGGTGGCCGCAAAGAAGACG___AAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTCGTTATGAAAAGTGGGAAGTACGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCATTCTCGCTAACAACTGCCCAGCTTTGAG|GTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAGATAGAAGAGTGAACCGACACAGTGTGTTATCATAGAGGAGACAAAAATGGTAGTGAAGCTTGTGGTTATGTATCTTATCTTTCTACATTTACATGTTTTCTGTAAGGAGTGTGGTTATAGAGAGACTGTTGGAACCATGAGAAGGATGTTTC MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19871 DDX31::CFAP77 ENSG00000125485.18::ENSG00000188523.9 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DDX31 ENSG00000125485.18 protein_coding - - chr9:132592997-132670401:- chr9:132642004:- chr9:135468384-135545788:- chr9:135517391:- CFAP77 ENSG00000188523.9 protein_coding + - chr9:132410043-132573319:+ chr9:132548598:- chr9:135285430-135448706:+ chr9:135423985:- chr9:132637898,chr9:132637905 chr9:132549636,chr9:132549640 NA NA chr9:135513285,chr9:135513292 chr9:135425023,chr9:135425027 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(68%)| DEAD(100%),Helicase_C(29%),ResIII(100%)| 9 4 17 147 42 ENST00000372159.8 unknown upstream downstream duplicates(8),mismappers(1),mismatches(1) AGAAGATGGTTGTCTTTTTCTCAAGTTGCGAGCTGGTGGAGTTCCACTACAGCCTCTTCCTACAGACCCTGCTGAGCAGCTCAGGGGCGCCGGCATCAGGGCAGTTGCCATCTGCCTCCATGCGATTAAAATTCCTACGGCTGCATGGCGGCATGGAGCAGGAG___GAAAGAACAGCAGTGTTTCAGGAATTTTCACATTCCAGAAGAGGCGTCCTTCTTTGCACG|ATCCAGGCTCCGGAAGTCAGCAGGCCTCGCTGCTGGGGCACAGCCCTGACCTTCATGCCTGAGGGAAGCTGAATATGCAAAACCGGACTTGGCCAGCAGCGTGCGAGCGTTTGGTGAGACATCAGGAAGAACTGAGCTCAAAGCTGGAGGTCGAACACTGGGATGAACACCTGGGGAAGAACTCAGGATCTCCATCTTTTAAAAACATTTAAAAAAATAGCCTTACTGGTTTTGGAAAAGC KMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCT|iqapevsrprcwgtaltfmpegs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19888 NUP214::NTMT1 ENSG00000126883.19::ENSG00000148335.15 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUP214 ENSG00000126883.19 protein_coding + + chr9:131125573-131234663:+ chr9:131147584:+ chr9:134000960-134110050:+ chr9:134022971:+ NTMT1 ENSG00000148335.15 protein_coding + + chr9:129608884-129636135:+ chr9:129632650:+ chr9:132371163-132398414:+ chr9:132394929:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |AdoMet_dependent_proline_di-methyltransferase(100%) ANAPC4_WD40(100%),WD40(100%)|Methyltransf_11(100%),Methyltransf_12(100%),Methyltransf_2(100%),Methyltransf_25(100%),Methyltransf_PK(100%),Ubie_methyltran(100%) 5 8 6 189 468 ENST00000695497.1 ENST00000481189.1 downstream upstream duplicates(5),mismatches(1) TCCAAATATAGCAATGAAGtCCTCCTTCCCACCCTCAACCTCTGCTGTCAAAGTCAACCTTAGTGAAAA___GTTTACTGCTGCAGCTACCTCTACTCCTGTTAGTAGCTCCCAGAGCGCACCCCCGATGTCGCCATTCTCTTCTGaCTCCAAGCCAGCTGCTTCTGGACaACTCAGCCACCCCACACCTCTCTCAGCACCACCTAGTTCCGTGCCATTGAAGTCCTCAGTCTTGCCCTCACCATCAG___GACGATCTGCTCAGGGCAGTTCAAGCCCAGTGCCCTCAATGGTACAGAAATCACCCAGGATAACCCCTCCAGCGGCAAAGCCAGGCTCTCCCCAG|GAGAGTCGCGGTTGCTGATCGTGGTGCTTGAGTAGAGCCGTGGTTGGTGACAGCATGACGAGCGAGGTGATAGAAGACGAGAAGCAATTCTATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGGGGG___GAAGGCCCGAACAAG PNIAMKsSFPPSTSAVKVNLSEKFTAAATSTPVSSSQSAPPMSPFSSdSKPAASGqLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVPSMVQKSPRITPPAAKPGSPQ|esrgc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleoporin 214kDa (CAN) 1 AML, T-ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19903 DTNBP1::JARID2 ENSG00000047579.20::ENSG00000008083.14 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DTNBP1 ENSG00000047579.20 protein_coding - - chr6:15522807-15663058:- chr6:15593059:- chr6:15523038-15663289:- chr6:15593290:- JARID2 ENSG00000008083.14 protein_coding + - chr6:15246069-15522042:+ chr6:15492904:- chr6:15246300-15522273:+ chr6:15493135:- chr6:15547493,chr6:15547497 chr6:15513616,chr6:15513618 NA NA chr6:15547724,chr6:15547728 chr6:15513847,chr6:15513849 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none none none 4 2 5 41 36 ENST00000622898.4 unknown upstream downstream mismatches(1) GCTGCATCTGGAAGACTTATGTGGGCAGTGTGAATTAGAAAGATGCAAACATATGCAGTCCCAGCAACTGGAGAATTACAAGAAAAATAAGAG___GAAGGAACTTGAAACCTTCAAAG|GAGTTATCTTCAACAGTATCCACCCAGATATCACACACGCATGCCCATATAACAAGCTCAAAGACTAGATGGATCTCACCCACAACACAGACCAGCGAAGTTCAAtCAATTACGAAGACTGAAAAAGGCAAGTGTCACTGGCCATCTTCCTCCTCGAAACCCAGAGGGTCCGTGTTCTATGCCCACCACGAGAGGCCACAGGGGAGCTGAAAAGCTAACATAGGAAGCCCCTTAAGCTGCTCCATGTGTCCTAAAAGGGAGAAATAAAA LHLEDLCGQCELERCKHMQSQQLENYKKNKRKELETFK|gvifnsihpdithacpynklkd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19906 MRTFA::ENSG00000285943 ENSG00000196588.21::ENSG00000285943.1 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MRTFA ENSG00000196588.21 protein_coding - - chr22:40410281-40636719:- chr22:40552108:- chr22:40806285-41032723:- chr22:40948112:- ENSG00000285943 ENSG00000285943.1 protein_coding - - chr3:113361901-113515151:- chr3:113362712:- chr3:113080748-113233998:- chr3:113081559:- NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site 3'UTR translocation medium none none none 3 0 0 310 18 ENST00000463769.7 ENST00000649772.1 upstream downstream duplicates(2) CCGGGAGCCGCGCGAGGCG___ATTGCCATCACGAAAGCCAAAGTGGATTTCTCCAGTGTGGTGTGCCTGCCCCCTTCCGTCATTGCTGTGAATGGGCTGGACG...ACCCTAGGCCTCCACCCTGGCAGGAATCCCAATTTGCCTCCACTTAGTGAGCGGAAGAA|TGCcATCGGAAGACTGTGTGAAAAATGTGATGGCAAGTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE megakaryoblastic leukemia (translocation) 1 1 acute megakaryocytic leukaemia leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19916 MB21D2::FGF12 ENSG00000180611.7::ENSG00000114279.15 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- FGF12 ENSG00000114279.15 protein_coding - - chr3:192139390-192767764:- chr3:192360538:- chr3:191857179-192485553:- chr3:192078327:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none |Fibroblast_growth_factor(98%) |FGF(34%) 0 2 0 75 37 ENST00000392452.3 ENST00000450716.5 upstream downstream none ATTCACACAGCCAAGGATTTCATCTTTTCCATGCTGG|AACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATACTTCCTGCAGATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACA___CTCTCTTCAATCTAATTCCCGTGGGCCTGCGTGTAGTGGCCATCCAAGGAGTGAAGGCTAG...TCCAGAATGCAAATTCAAGGAATCTGTGTTTGAAAACTACTATGTGATCTATTCTTCCACACTGTACCGCCAGCAAGAATCAGGCCGAGCTTGGTTTCTGG IHTAKDFIFSML|ePQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 19921 PCAT1::PVT1 ENSG00000253438.5::ENSG00000249859.14 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589290:+ chr8:127568568-128431295:+ chr8:127601535:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070160:+ chr8:128806772-129199347:+ chr8:129082406:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site deletion low none none none 1 0 0 52 224 ENST00000645463.1 ENST00000651587.1 downstream upstream none CTCTCACAAAAGTCACCGCGTTTGTGTAGGTAACTAAGGCCTACCGAAACCAGTCAGCCCTAAGTGCACACAGGAGAACCATGGAGTTGGAGGAAAAG|AGCCAGTCTTGGTGCTCTGTGTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19922 ASAP1::EFR3A ENSG00000153317.15::ENSG00000132294.15 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130214556:- chr8:131064350-131455920:- chr8:131226802:- EFR3A ENSG00000132294.15 protein_coding + + chr8:131904093-132013642:+ chr8:132001759:+ chr8:132916340-133025889:+ chr8:133014006:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none BAR_domain_of_APPL_family(35%)| BAR(75%),BAR_3(75%)| 1 0 0 273 884 ENST00000518721.6 ENST00000254624.10 upstream upstream none GTACAAAATGAAGAAAACTATGCACAAGTTCTTGATAAGTTTGGGAGTAATTTTTTAAGTCGAGACAACCCCGACCTTGGCACCGCGTTTGTCAAGTTTTC...CTGTCCACACTGCTGAAAAATCTG|GTTAGTAACACTGAAGAAATCACTTTTGAAGCATTGAAGAAAGCAATTG___ATACCAGTGGAATGGAAGAACAGGAAAA LSTLLKNL|VSNTEEITFEALKKAIDTSGMEEQE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19929 KATNBL1::TP53BP1 ENSG00000134152.11::ENSG00000067369.14 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1858 FALSE NA FALSE NA KATNBL1 ENSG00000134152.11 protein_coding - - chr15:34140674-34210096:- chr15:34145398:- chr15:34432875-34502297:- chr15:34437599:- TP53BP1 ENSG00000067369.14 protein_coding - - chr15:43403061-43510728:- chr15:43422126:- chr15:43695259-43802926:- chr15:43714324:- chr15:34142398,chr15:34142402 chr15:43423150,chr15:43423151 NA NA chr15:34434599,chr15:34434603 chr15:43715348,chr15:43715349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none con80_domain_of_Katanin(94%)|BRCA1_C_Terminus_(BRCT)_domain(100%),Tumour_suppressor_p53-binding_protein-1_Tudor(100%) Katanin_con80(52%)|53-BP1_Tudor(100%),BRCT_3(100%),GCP_C_terminal(100%) 62 41 112 275 525 ENST00000256544.8 ENST00000263801.7 upstream downstream duplicates(60),low_entropy(1),mismatches(13),multimappers(13) TGAAGA___ATATGTTATAGTTGGTTTAAACTGGCTTCAAGCAGTCATTAAAAGGTGGTGGTCAGAACTATCATCCAAAACAGAAATTATAAATGATGG___AAATATTCAAATTTTAAAACAACAATTAAGTGGATTATGGGAACAGGAAAACCATCTTACTTTGGTTCCAGGATATACTGGTAATATAGCTAAG|GAGACTGAAGAGCCAATTGTAGAGTGTCAGGAGTGTGAAACTGAAGTTTCCCCTTCACAGACTGGGGGCTCCTCAGGTGACCTGGGGGATATCAGCTCCTTCTCCTCCAAGGCATCCAGCTTACACCGCACATCAAGTGGGACAAGTCTCTCAGCTATGCACAGCAGTGGAAGCTCAGGGAAAGGAGCCGGACCACTCAGAGGGAAAACCAGCGGGACAGAACCCGCAGATTTTGCCTTACCCAGCTCCCGAGGAGGCC EEYVIVGLNWLQAVIKRWWSELSSKTEIINDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAK|ETEEPIVECQECETEVSPSQTGGSSGDLGDISSFSSKASSLHRTSSGTSLSAMHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19931 ZNFX1::ECI1 ENSG00000124201.15::ENSG00000167969.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1859 TRUE 3431 TRUE 1300 ZNFX1 ENSG00000124201.15 protein_coding - - chr20:49237946-49278426:- chr20:49278021:- chr20:47854483-47894963:- chr20:47894558:- ECI1 ENSG00000167969.13 protein_coding - - chr16:2239402-2252300:- chr16:2246986:- chr16:2289403-2302301:- chr16:2296987:- chr20:49275949,chr20:49275953,chr20:49275953 chr16:2248121,chr16:2248122,chr16:2248423 NA NA chr20:47892486,chr20:47892490,chr20:47892490 chr16:2298122,chr16:2298123,chr16:2298424 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Enoyl-CoA_hydratase/isomerase(99%) |ECH_1(61%),ECH_2(100%) 9 113 8 48 1428 ENST00000371754.8 ENST00000301729.9 upstream downstream duplicates(27),mismatches(6) GCGCCGGGCGGGGCCACCGACCTGCCTGGGCCGAAGCCCCAGCACTCGCCGGCGGCAGTGAAAGGACGCGCCGGAGCCGG|GGGTCGCTGTGATGAAATTCAAGAACCCCCCAGTGAACAGCCTGAGCCTGGAGTTTCTGACGGAGCTGGTCATCAGCCTGGAGAAGCTGGAGAATGACAAGAGCTTCCGCGGTGTCATTCTGACCTCG___GACCGCCCGGGTGTCTTCTCGGCCGGCCTGGACCTGACGGAGATGTGTGGGAGGAGCCCCGCCCACTACGCTGGGTACTGGAAGGCCGTTCAGGAGCTGTGGCTGCGGTTGTACCAGTCCAACCTGGTGCTGGTCTCCGCCATCAAC___GGAGCCTGCCCCGCTGGAGGCTGCCTGGTGGCCCTGACCTGTGACTACCGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19932 ZNFX1::ECI1 ENSG00000124201.15::ENSG00000167969.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3431 TRUE 1300 ZNFX1 ENSG00000124201.15 protein_coding - - chr20:49237946-49278426:- chr20:49277930:- chr20:47854483-47894963:- chr20:47894467:- ECI1 ENSG00000167969.13 protein_coding - - chr16:2239402-2252300:- chr16:2246986:- chr16:2289403-2302301:- chr16:2296987:- chr20:49275949,chr20:49275953,chr20:49275953 chr16:2248121,chr16:2248122,chr16:2248423 NA NA chr20:47892486,chr20:47892490,chr20:47892490 chr16:2298122,chr16:2298123,chr16:2298424 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Enoyl-CoA_hydratase/isomerase(99%) |ECH_1(61%),ECH_2(100%) 2 2 9 9 1428 ENST00000371754.8 ENST00000301729.9 upstream downstream duplicates(5) CCGCCCGCCCGGCTCCGCCCAGGGTCTGCGGGGAACGGAAACCGAAAGTGCGCGGCGCCGGGCGGGGCCACCGACCTGCCTGGGCCGAAGCCCCAGCACTCGCCGGCGGCAGTGAAAGGACGCGCCGGAGCCGGGTGAGTGGCCCCGCAACTGCCCCTGCCCCTGATTCTTCCTTGCCTCGCCGCGAACCCCGGCGCCCGCGCCGACCCGCCACTGCCTCTGCCC|GGGTCGCTGTGATGAAATTCAAGAACCCCCCAGTGAACAGCCTGAGCCTGGAGTTTCTGACGGAGCTGGTCATCAGCCTGGAGAAGCTGGAGAATGACAAGAGCTTCCGCGGTGTCATTCTGACCTCG___GACCGCCCGGGTGTCTTCTCGGCCGGCCTGGACCTGACGGAGATGTGTGGGAGGAGCCCCGCCCACTACGCTGGGTACTGGAAGGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19933 SLC31A1::CPNE2 ENSG00000136868.11::ENSG00000140848.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1860 TRUE 3432 TRUE 1301 SLC31A1 ENSG00000136868.11 protein_coding + + chr9:113221544-113264492:+ chr9:113221678:+ chr9:115983824-116026772:+ chr9:115983958:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57125860:+ chr16:57126495-57182281:+ chr16:57159772:+ chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759 chr16:57125747,chr16:57125741,chr16:57125740,chr16:57125720,chr16:57125717,chr16:57125702,chr16:57125690 NA NA chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039 chr16:57159659,chr16:57159653,chr16:57159652,chr16:57159632,chr16:57159629,chr16:57159614,chr16:57159602 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Copine(100%) |Copine(100%) 11 80 32 470 408 ENST00000374212.5 ENST00000290776.13 downstream upstream duplicates(21),mismatches(8) GGACACGTCGAGCCGGGTAGAAGTGGAGGGGCCGTTCGAAGAGTCGTGAGGGGGTGACGGGTTAAGATTCGGAGAGAGAGGTGCTAGTGGCTGGACTTGACCTGGAAAG|GTTGGAATAGACTTTACAGCCTCCAACGGGAATCCCCTCGACCCTTCCTCTTTGCACTATATCAACCCTATGGGCACCAACGAATATCTGTCGGCCATCTGGGCTGTTGGGCAGATCATTCAGGACTACGACAG___TGATAAGATGTTTCCAGCTCTGGGATTCGGGGCCCAGTTACCCCCAGACTGGAAG___GTCTCCCATGAGTTTGCCATCAACTTCAACCCCACCAACCCCTTCTGCTCAG___GTGTGGATGGTATTGCCCAGGCGTACTCAGCTTGCCTGCCCCACATCCGCTTCTACGGTCCTACCAATTTCTCCCCCATCGTCAACCACGTGGCCCGGTTTGCGGCCCAGGCCACACAACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19934 SLC31A1::CPNE2 ENSG00000136868.11::ENSG00000140848.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3432 TRUE 1301 SLC31A1 ENSG00000136868.11 protein_coding + + chr9:113221544-113264492:+ chr9:113221678:+ chr9:115983824-116026772:+ chr9:115983958:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57127849:+ chr16:57126495-57182281:+ chr16:57161761:+ chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759 chr16:57125747,chr16:57125741,chr16:57125740,chr16:57125720,chr16:57125717,chr16:57125702,chr16:57125690 NA NA chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039 chr16:57159659,chr16:57159653,chr16:57159652,chr16:57159632,chr16:57159629,chr16:57159614,chr16:57159602 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Copine(86%) |Copine(91%) 0 4 8 470 567 ENST00000374212.5 ENST00000290776.13 downstream upstream duplicates(2),mismatches(4) GACACGTCGAGCCGGGTAGAAGTGGAGGGGCCGTTCGAAGAGTCGTGAGGGGGTGACGGGTTAAGATTCGGAGAGAGAGGTGCTAGTGGCTGGACTTGACCTGGAAAG|TGATAAGATGTTTCCAGCTCTGGGATTCGGGGCCCAGTTACCCCCAGACTGGAAG___GTCTCCCATGAGTTTGCCATCAACTTCAACCCCACCAACCCCTTCTGCTCAG___GTGTGGATGGTATTGCCCAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19935 SLC31A1::CPNE2 ENSG00000136868.11::ENSG00000140848.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3432 TRUE 1301 SLC31A1 ENSG00000136868.11 protein_coding + + chr9:113221544-113264492:+ chr9:113221678:+ chr9:115983824-116026772:+ chr9:115983958:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57134775:+ chr16:57126495-57182281:+ chr16:57168687:+ chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759 chr16:57125747,chr16:57125741,chr16:57125740,chr16:57125720,chr16:57125717,chr16:57125702,chr16:57125690 NA NA chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039 chr16:57159659,chr16:57159653,chr16:57159652,chr16:57159632,chr16:57159629,chr16:57159614,chr16:57159602 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Copine(78%) |Copine(59%) 1 5 6 470 716 ENST00000374212.5 ENST00000290776.13 downstream upstream duplicates(1),mismatches(3) GACACGTCGAGCCGGGTAGAAGTGGAGGGGCCGTTCGAAGAGTCGTGAGGGGGTGACGGGTTAAGATTCGGAGAGAGAGGTGCTAGTGGCTGGACTTGACCTGGAAAG|GTCTCCCATGAGTTTGCCATCAACTTCAACCCCACCAACCCCTTCTGCTCAG___GTGTGGATGGTATTGCCCAGGCGTACTCAGCTTGCCTGCCCCACATCCGCTTCTACGGTCCTACCAATTTCTCCCCCATCGTCAACCACGTGGCCCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACG___CAGTACTTCATCCTCCTCATCATCACGGACGGGGTCATCAGTGACATGGAGGAGACACGGCATGCCGTGGTGCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19938 LRIG2::CHIA ENSG00000198799.12::ENSG00000134216.19 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3433 TRUE 1302 LRIG2 ENSG00000198799.12 protein_coding + + chr1:113073198-113132260:+ chr1:113098785:+ chr1:113615820-113674882:+ chr1:113641407:+ CHIA ENSG00000134216.19 protein_coding + + chr1:111290851-111320566:+ chr1:111310400:+ chr1:111833473-111863188:+ chr1:111853022:+ chr1:113099747,chr1:113099748 chr1:111292450,chr1:111292448 NA NA chr1:113642369,chr1:113642370 chr1:111835072,chr1:111835070 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Leucine_rich_repeat(77%)|Chitin_binding_Peritrophin-A_domain(100%),Glycosyl_hydrolases_family_18(100%) LRR_1(100%),LRR_5(35%),LRR_8(25%)|CBM_14(100%),Glyco_hydro_18(100%) 31 36 46 120 83 ENST00000361127.6 ENST00000451398.6 downstream upstream duplicates(26),low_entropy(1),mismatches(6) GGGAGTTCTGCCAAAGACTATCCGAACT___TGATTTGTCCTATAACCAGCTGACCCGCCTGGATGAATCTGCCTTTGTGGGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGACAACAGAGTCACTCATATTGCTGATGGTGTATTTAGATTTCTTTCCAATCTTCAGACATT___AGACTTAAGAAACAATGAAATTTCATGGGCCATAGAAGATGCTAGTGAAGCCTTTGCTGGACTCACAAGTCTCACTAAACT|AAGCCTTTGTGATAACCACAGAATCAGAACATATAAAAAGCTCTGCGGGACTGGTGCTGACTGCAACCATGACAAAGCTTATTCTCCTCACAG___GTCTTGTCCTTATACTGAATTTGCAGCTCG___GAACAGCCAGCTGAAAACTCTCCTGGCCATTGGAGGCTGGAACTTCGGGACTGCCCC___TTTCACTGCCATGGTTTCTACTCCTGAGAACCGCCAGACTTTC EFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKl|slcdnhrirtykklcgtgadcnhdkaysphrscpytefaarnsqlktllaiggwnfgtapftamvstpenrqt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19939 LRIG2::CHIA ENSG00000198799.12::ENSG00000134216.19 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3433 TRUE 1302 LRIG2 ENSG00000198799.12 protein_coding + + chr1:113073198-113132260:+ chr1:113098785:+ chr1:113615820-113674882:+ chr1:113641407:+ CHIA ENSG00000134216.19 protein_coding + + chr1:111290851-111320566:+ chr1:111311689:+ chr1:111833473-111863188:+ chr1:111854311:+ chr1:113099747,chr1:113099748 chr1:111292450,chr1:111292448 NA NA chr1:113642369,chr1:113642370 chr1:111835072,chr1:111835070 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Leucine_rich_repeat(77%)|Chitin_binding_Peritrophin-A_domain(100%),Glycosyl_hydrolases_family_18(100%) LRR_1(100%),LRR_5(35%),LRR_8(25%)|CBM_14(100%),Glyco_hydro_18(100%) 2 3 27 120 109 ENST00000361127.6 ENST00000451398.6 downstream upstream duplicates(6),mismatches(3) TTGGAGAGATTGAATTTAGGAGACAACAGAGTCACTCATATTGCTGATGGTGTATTTAGATTTCTTTCCAATCTTCAGACATT___AGACTTAAGAAACAATGAAATTTCATGGGCCATAGAAGATGCTAGTGAAGCCTTTGCTGGACTCACAAGTCTCACTAAACT|GTCTTGTCCTTATACTGAATTTGCAGCTCG___GAACAGCCAGCTGAAAACTCTCCTGGCCATTGGAGGCTGGAACTTCGGGACTGCCCC___TTTCACTGCCATGGTTTCTACTCCTGAGAACCGCCAGACTTTCATCACCTCAGTCATCAAATTCCTG...TATCCAGTCTGGCTATGAGATCCCCCAACTGTCACA___GTACCTGGACTACATCCATGTCATGACCTACGACCTCCATGGCTCCTGGGAGGGCTACACTGGAG LERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKl|scpytefaarnsqlktllaiggwnfgtapftamvstpenrqtfitsvikf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19940 LRIG2::CHIA ENSG00000198799.12::ENSG00000134216.19 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1861 TRUE 3433 TRUE 1302 LRIG2 ENSG00000198799.12 protein_coding + + chr1:113073198-113132260:+ chr1:113098785:+ chr1:113615820-113674882:+ chr1:113641407:+ CHIA ENSG00000134216.19 protein_coding + + chr1:111290851-111320566:+ chr1:111314540:+ chr1:111833473-111863188:+ chr1:111857162:+ chr1:113099747,chr1:113099748 chr1:111292450,chr1:111292448 NA NA chr1:113642369,chr1:113642370 chr1:111835072,chr1:111835070 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Leucine_rich_repeat(77%)|Chitin_binding_Peritrophin-A_domain(100%),Glycosyl_hydrolases_family_18(81%) LRR_1(100%),LRR_5(35%),LRR_8(25%)|CBM_14(100%),Glyco_hydro_18(67%) 2 5 25 120 122 ENST00000361127.6 ENST00000369740.6 downstream upstream duplicates(7),mismatches(3) GGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGACAACAGAGTCACTCATATTGCTGATGGTGTATTTAGATTTCTTTCCAATCTTCAGACATT___AGACTTAAGAAACAATGAAATTTCATGGGCCATAGAAGATGCTAGTGAAGCCTTTGCTGGACTCACAAGTCTCACTAAACT|GAACAGCCAGCTGAAAACTCTCCTGGCCATTGGAGGCTGGAACTTCGGGACTGCCCC___TTTCACTGCCATGGTTTCTACTCCTGAGAACCGCCAGACTTTCATCACCTCAGTCATCAAATTCCTGCGCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGA GLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKl|NSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19945 CHMP4C::C8orf88 ENSG00000164695.5::ENSG00000253250.3 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1864 FALSE NA FALSE NA CHMP4C ENSG00000164695.5 protein_coding + + chr8:81732448-81759515:+ chr8:81732816:+ chr8:82644683-82671750:+ chr8:82645051:+ C8orf88 ENSG00000253250.3 protein_coding - - chr8:90958471-90985238:- chr8:90960848:- chr8:91970699-91997466:- chr8:91973076:- chr8:81733402,chr8:81733402 chr8:90966401,chr8:90966396 NA NA chr8:82645637,chr8:82645637 chr8:91978629,chr8:91978624 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Snf7(23%)| Snf7(0%)| 20 37 50 185 167 ENST00000297265.5 ENST00000517562.3 downstream downstream duplicates(21),low_entropy(1),mismatches(3) TCCGGTCTGGGTCCCCGAGAGGACTGCCTTGCTCACCTGTCCCCTCGGCGCGGCCCCGGGGAGCTCCCGAGAGGCCCCCGGGATCGCTGGCCCTCCGAACTCCACAGCAATGAGCAAGTTGGGCAAGTTCTTTAAAGGGGGCGGCTCTTCTAAGAGCCGAGCCGCTCCCAGTCCCCAGGAGGCCCTGGTCCGACTTCGGGAGACTGAGGAGATGCTGGGCAAGAAACAAGAGTACCTGGAAAATCGAATCCAGAGAGAAATCGCCCTGGCCAAGAAGCACGGCACGCAGAATAAGCGAG|AGAGAATTAAATACAGCAGAGATTTCCTGTTGAAGCTCTCAAGTGTTTCCATCTGCAGAAAAAAACCAGACTTTCTGCCTGATCATCCCATTGTACTGCAAAAACCA___GAAAACAACCAAAGTTTTAAGTAGCATTTTAAGAACAGATGAATTTAAGTTTGGACATCTGCAAATGAGGTGGATCTAGCAACAATA MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKR|eRIKYSRDFLLKLSSVSICRKKPDFLPDHPIVLQKPENNQSFK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19946 NOP2::ANO2 ENSG00000111641.13::ENSG00000047617.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOP2 ENSG00000111641.13 protein_coding - - chr12:6556863-6568691:- chr12:6566101:- chr12:6666029-6677857:- chr12:6675267:- ANO2 ENSG00000047617.17 protein_coding - + chr12:5531869-5946232:- chr12:5776445:+ chr12:5641035-6055398:- chr12:5885611:+ chr12:6564412,chr12:6564416 chr12:5773112,chr12:5773108 NA NA chr12:6673578,chr12:6673582 chr12:5882278,chr12:5882274 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 22 32 41 1096 89 ENST00000322166.10 unknown upstream upstream duplicates(19),mismappers(2),mismatches(4) GGAGCTGTCCAGACAGCTGGTAAGAAGGGACCCCAGTCCCTATTTAATGCTCCTCGAGGCAAGAAGCGCCCAGCACCTGGCAGTGATGAGGAAGAGGAGGAGGAAGACTCTGAAGAAGATGGTATGGTGAACCACGGGGACCTCTGGGGCTCCGAGGACGATGCTGATACGGTAGATGACTATGGAGCTGACTCCAACTCTGAGGATGAGGAGGAAGGTGAAGCG|GCATTGTACAAGGCCCTGTCCTTTCCAAGCACTTGACAAATGCCTATTGAATGCATGAACAAATGAATGTGTGACATGAGCATCTTCCACGTGTCAAGTAATGGCAAGTGGAAGAATGCATCAGCTGATGTGCATGAGAGACATTTAGGAAGAAAGCCATTCAGGGACGGTACCAGTTTCTGTCACCAGGATCCTGGTTACCCGGAAGAATCTAAATGTGAGTAACCTTTGCCTGGACTCGGCCATGAGCTTTCTCTTAGCATATTTTAACGTAAGGACTAGAGAATGAG GAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDGMVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEA|alykalsfpst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19949 ENSG00000285238::ANO2 ENSG00000285238.2::ENSG00000047617.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285238 ENSG00000285238.2 protein_coding - - chr12:6556886-6607367:- chr12:6566101:- chr12:6666052-6716533:- chr12:6675267:- ANO2 ENSG00000047617.17 protein_coding - + chr12:5531869-5946232:- chr12:5776445:+ chr12:5641035-6055398:- chr12:5885611:+ chr12:6564412,chr12:6564416 chr12:5773112,chr12:5773108 NA NA chr12:6673578,chr12:6673582 chr12:5882278,chr12:5882274 NA NA sense antisense unknown 3'UTR/splice-site intron inversion/5'-5' high none none CHDCT2(100%),CHDNT(100%),Chromo(100%),DUF1086(100%),DUF1087(100%),Helicase_C(100%),PHD(100%),ResIII(100%),SNF2-rel_dom(100%)| 17 32 36 1096 89 ENST00000644480.2 unknown upstream upstream duplicates(16),mismappers(2),mismatches(1) CCCCAGTCCCTATTTAATGCTCCTCGAGGCAAGAAGCGCCCAGCACCTGGCAGTGATGAGGAAGAGGAGGAGGAAGACTCTGAAGAAGATGGTATGGTGAACCACGGGGACCTCTGGGGCTCCGAGGACGATGCTGATACGGTAGATGACTATGGAGCTGACTCCAACTCTGAGGATGAGGAGGAAGGTGAAGCG|GCATTGTACAAGGCCCTGTCCTTTCCAAGCACTTGACAAATGCCTATTGAATGCATGAACAAATGAATGTGTGACATGAGCATCTTCCACGTGTCAAGTAATGGCAAGTGGAAGAATGCATCAGCTGATGTGCATGAGAGACATTTAGGAAGAAAGCCATTCAGGGACGGTACCAGTTTCTGTCACCAGGATCCTGGTTACCCGGAAGAATCTAAATGTGAGTAACCTTTGCCTGGACTCGGCCATGAGCTTTCTCTTAGCATATTTTAACGTAAGGACTAGAGAATGAGAAGCTCCTTTGATCTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19950 RABGAP1L::DNM3 ENSG00000152061.24::ENSG00000197959.15 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1865 FALSE NA FALSE NA RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174159657:+ chr1:174128548-174964445:+ chr1:174128795:+ DNM3 ENSG00000197959.15 protein_coding + + chr1:171817887-172418466:+ chr1:172379018:+ chr1:171787027-172387606:+ chr1:172348158:+ chr1:174168272,chr1:174168273 chr1:172351889,chr1:172351887 NA NA chr1:174137410,chr1:174137411 chr1:172321029,chr1:172321027 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Dynamin_GTPase_effector_domain(100%) |GED(100%) 12 32 38 114 88 ENST00000681986.1 ENST00000485254.3 downstream upstream duplicates(20),low_entropy(5),mismatches(4) AGTTCCCTCCGCCCTCCTCGGGCTCCAGCGGTGGCGGAGCGAACGGGACCGGCCCGGCTTCAGAGCGCGAGGTGGAGGGTGGAACGCGGGCGCCTGAAGGAGTTGTTGTCTCGGCAGCGCCCGCGGAGACGTGAAGAG|GCTGAAAATGATGAGAATGGACAAGCAGAAAACTTTTCCATGGACCCACAATTGGAGAGGCAAGTGGAGACCATTCGCAACCTCGTAGACTCCTACATGTCCATTATCAACAAATGTATCCGAGATCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAC___GTTAAAGATTTCATAAATTCCGAGCTCCTAGCACAGTTGTATTCTTCAGAGGACCAAAATACCCTGATGGAGGAATCTGCTGAGCAGGCTCAGCGCCGGGATGAGATGCTTCGAATGTATCAAGCACTGAAAGAAGCCCTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19951 MTUS1::SLC7A2 ENSG00000129422.15::ENSG00000003989.18 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTUS1 ENSG00000129422.15 protein_coding - - chr8:17643795-17801094:- chr8:17653186:- chr8:17501304-17658603:- chr8:17510695:- SLC7A2 ENSG00000003989.18 protein_coding + - chr8:17497088-17570573:+ chr8:17527738:- chr8:17354597-17428082:+ chr8:17385247:- chr8:17651348 chr8:17532043 NA NA chr8:17508857 chr8:17389552 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 24 7 35 205 92 ENST00000693296.1 unknown upstream downstream duplicates(17),low_entropy(4),mismappers(3),mismatches(2) CTTACATTGAAGAAGCAGAGAAGTACAAAATGCAATTGCAAGAGCAG___TTTGACAACTTAAATGCTGCGCATGAAACCTCTAAGTTGGAAATTGAAGCTAGCCACTCAGAGAAACTTGAATTGCTAAAGAAGGCCTATGAAGCCTCCCTTTCAG___AAATTAAGAAAGGCCATGAAATAGAAAAGAAATCGCTTGAAGATTTACTTTCTGAGAAGCAGGAATCGCTAGAG___AAGCAAATCAATGATCTGAAGAGTGAAAATGATGCTTTAAATGAAAAATTGAAATCAGAAGAACAAAAAAGAAGAGCAAGAGAAAAAGCAAATTTG|AAGAAGAAAATGCCATGTGAGACACACGAAGAATGCCATGTGATGACAGAGGCAGAAATTACAGTGACGCAGCTGTGAGCCAAGTAACGCCAAAGATGGATGGCCACAACCAGAAGCTAGAAGAGGCAAGGAATGACCCTCCCCTGCAGGTTTCAGAAGGAGCACAGACAGTCCAGCTGCCACCTTGATTTTGGACTTCAAGTTTCCAGAACTGTAAGACAAACTATTTGTTATTTTA YIEEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEKLELLKKAYEASLSEIKKGHEIEKKSLEDLLSEKQESLEKQINDLKSENDALNEKLKSEEQKRRAREKANL|kkkmpcetheechvmteaeitvtql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548v chr8:17681578-17681657:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19957 LRRC28::IQCH ENSG00000168904.15::ENSG00000103599.20 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1867 TRUE 3437 TRUE 1303 LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99287951:+ chr15:99791567-99930934:+ chr15:99828156:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:99310521,chr15:99310517 chr15:67382669,chr15:67382665 NA NA chr15:99850726,chr15:99850722 chr15:67675007,chr15:67675003 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Leucine_rich_repeat(65%)| LRR_4(0%),LRR_8(30%)| 16 4 16 78 20 ENST00000301981.8 ENST00000335894.9 downstream upstream duplicates(5) CCATTTTCCATTGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG___CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT___ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAG___CCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAG|GGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAG___ATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGAC HFPLELLKDEGLQYLERLYMKRNSLTSLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPP|gYSQPVREHIADFNTQQNMQLGRLCDILDANVNVIYICSHHMN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19958 LRRC28::IQCH ENSG00000168904.15::ENSG00000103599.20 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3437 TRUE 1303 LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99287951:+ chr15:99791567-99930934:+ chr15:99828156:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67388831:+ chr15:67547124-67794598:+ chr15:67681169:+ chr15:99310521,chr15:99310517 chr15:67382669,chr15:67382665 NA NA chr15:99850726,chr15:99850722 chr15:67675007,chr15:67675003 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Leucine_rich_repeat(65%)| LRR_4(0%),LRR_8(30%)| 0 1 11 78 35 ENST00000559433.5 ENST00000335894.9 downstream upstream duplicates(2) GAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG___ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAG___CCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCCAG|ATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTACATGCAGCCGTCAAATCTGGGAACCTTGAGGACAGAAGTGACCTGCAGGACAGGTTCAAAATTATCACACCTGAAGCTGTAAACATCTTCCCT___GAGCCAGCTTTGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAGCACGCACAGCCAGTCAATGAGAAACGGTTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19959 SLC44A3-AS1::ALG14 ENSG00000224081.10::ENSG00000172339.10 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1868 TRUE 3438 TRUE 1304 SLC44A3-AS1 ENSG00000224081.10 transcribed_processed_pseudogene - - chr1:94613814-94855426:- chr1:94819956:- chr1:95079370-95320982:- chr1:95285512:- ALG14 ENSG00000172339.10 protein_coding - - chr1:94974405-95072951:- chr1:94983306:- chr1:95439961-95538507:- chr1:95448862:- chr1:94810989,chr1:94810993 chr1:95006991,chr1:95006992 NA NA chr1:95276545,chr1:95276549 chr1:95472547,chr1:95472548 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Oligosaccharide_biosynthesis_protein_Alg14_like(42%) |Alg14(0%) 7 6 17 31 146 ENST00000634870.1 ENST00000370205.6 upstream downstream duplicates(7),mismatches(1) AGCTCACCCGCTGTCAGCTGGGGTCCTGCTCTGGTGGGAGGAAGAGGCTCAGACGCTTCCCTGCCCTCTCGCCTCAACCACCTCGAGGCAGCGGCTCCCAGGATGTGCACTTTGACGACTAAAGCTGAGCCGGCGCCGCCACGACCTTGGGCGGGTGGTCGGCCTCTGCCCTGAGCAGGAAGTAGAAAGTCTCAGCAGACCCTTCCTGAGGGCCGAGCAACAGTGTAGTGGCGTATTCCACATAGCAAACAG|GTGTTGTGTAACGGACCAGGAACATGTGTTCCTATCTGTGTATCTGCCCTTCTCCTTGGGATACTAGGAATAAAGAAAGTGATCATTGTCTACGTTGAAAGCATCTGCCGTGTAGAAACGTTATCCATGTCCGGAAAGATTCTGTTTCATCTCTCAGATTACTTCATTGTTCAGTGGCCGGCTCTGAAAGAAAAGTATCCCAAATCGGTGTACCTTGGGCGAATTGTTTGACAAATGGCAACTGACTTCTTTAGAATTTTGCAGTTAACAGTAGTATGTACTCAAATTGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19960 SLC44A3-AS1::ALG14 ENSG00000224081.10::ENSG00000172339.10 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3438 TRUE 1304 SLC44A3-AS1 ENSG00000224081.10 transcribed_processed_pseudogene - - chr1:94613814-94855426:- chr1:94819956:- chr1:95079370-95320982:- chr1:95285512:- ALG14 ENSG00000172339.10 protein_coding - - chr1:94974405-95072951:- chr1:94983633:- chr1:95439961-95538507:- chr1:95449189:- chr1:94810989,chr1:94810993 chr1:95006991,chr1:95006992 NA NA chr1:95276545,chr1:95276549 chr1:95472547,chr1:95472548 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none |Oligosaccharide_biosynthesis_protein_Alg14_like(42%) |Alg14(0%) 2 1 17 31 15 ENST00000634870.1 ENST00000507727.2 upstream downstream duplicates(6),mismatches(1) TGCGGTCCACTGGGTCCGCCTCTTCCCGGCATGGGTTTCTGCCCAGCTCACCCGCTGTCAGCTGGGGTCCTGCTCTGGTGGGAGGAAGAGGCTCAGACGCTTCCCTGCCCTCTCGCCTCAACCACCTCGAGGCAGCGGCTCCCAGGATGTGCACTTTGACGACTAAAGCTGAGCCGGCGCCGCCACGACCTTGGGCGGGTGGTCGGCCTCTGCCCTGAGCAGGAAGTAGAAAGTCTCAGCAGACCCTTCCTGAGGGCCGAGCAACAGTGTAGTGGCGTATTCCACATAGCAAACAG|GTCCACAGAGCAGTCAGAGAAGAGCAACACATGCCTGTCCGATGAGTGCTGACTGAGCACCAGGAACTGTGCTAGAAGTTAGAAGTTAAGTGATTTGCCCTGAGTCACACAGTTG___GTGTTGTGTAACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19965 IGF1R::TTC23 ENSG00000140443.15::ENSG00000103852.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ TTC23 ENSG00000103852.13 protein_coding - + chr15:99136323-99251223:- chr15:99162090:+ chr15:99676528-99791428:- chr15:99702295:+ chr15:98762017,chr15:98762014 chr15:99151664,chr15:99151658 NA NA chr15:99305246,chr15:99305243 chr15:99691869,chr15:99691863 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Furin-like_cysteine_rich_region(24%),Receptor_L_domain(50%)| C_tripleX(0%),Furin-like(0%),Recep_L_domain(1%)| 3 6 10 94 20 ENST00000650285.1 unknown downstream upstream duplicates(5),mismatches(2) TCGGGGGGCCATCAGGATTGAGAAAAATGCTGACCTCTGTTACCTCTCCACTGTGGACTGGTCCCTGATCCTGGATGCGGTGTCCAATAACTACATTGTGGGGAATAAGCCCCCAAAGGAATGTGGGGACCTGTGTCCAGGGACCATGGAGGAGAAGCCGATGTGTGAGAAGACCACCATCAACAATGAGTACAACTACCGCTGCTGGACCACAAACCGCTGCCAGAAAA|CTTTCCCGGTGATACATAAAGAAAAGTTACTGCAAAAGAAGAAACTATGCCCCACATCTGAACACACTG___GAACGAACTTCAGAAAGCACCCCAACCTCCAGTTGAGAGTGGAGCTGGC RGAIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQK|tfpvihkekllqkkklcptsehtgtnfrkhpnlqlrvel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19966 PML::MCTP2 ENSG00000140464.20::ENSG00000140563.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1869 TRUE 3440 TRUE 1305 PML ENSG00000140464.20 protein_coding + + chr15:73994673-74047827:+ chr15:73998476:+ chr15:74287014-74340168:+ chr15:74290817:+ MCTP2 ENSG00000140563.16 protein_coding + + chr15:94231538-94483952:+ chr15:94356137:+ chr15:94774767-95027181:+ chr15:94899366:+ chr15:74006104,chr15:74006105 chr15:94345340,chr15:94345338 NA NA chr15:74298445,chr15:74298446 chr15:94888569,chr15:94888567 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none B-box_zinc_finger(100%)|C2_domain(65%),Plant_phosphoribosyltransferase_C-terminal(100%) zf-B_box(100%)|C2(57%),PRT_C(100%) 7 3 8 83 71 ENST00000268058.8 ENST00000357742.10 downstream upstream duplicates(2),mismatches(2) GCAGACACACCCGCCCTGGATAACGTCTTTTTCGAGAGTCTGCAGCGGCGCCTGTCGGTGTACCGGCAGATTGTGGATGCGCAGGCTGTGTGCACCCGCTGCAAAGAGTCGGCCGACTTCTGGTGCTTTGAGTGCGAGCAGCTCCTCTGCGCCAAGTGCTTCGAGGCACACCAGTGGTTCCTCAAGCACGAGGCCCGGCCCCTAGCAGAGCTGCGCAACCAGTCGGTGCGTGAGTTCCTGGACGGCACCCGCAAGACCAACAACATCTTCTGCTCCAACCCCAACCACCGCACCCCTACGCTGACCAG|TCCTCTTTGATACGCAACCTACGGCTCTCTGAGTCCTTGAAAAAGAACCAACTCTGGAACGGGATTATAAGTATAACTTTGTTGGAAGGGAAGAATGTCTCAGGAGGAAGCATGACAGAGATGTTTGTCCAGTTAAAACTGGGAGATCAGAGGTATAAAAGTAAG___ACACTGTGTAAGAGTGCAAATCCGCAGTGGCAGGAACAGTTTGACTTTCAC...___GATGGGC ADTPALDNVFFESLQRRLSVYRQIVDAQAVCTRCKESADFWCFECEQLLCAKCFEAHQWFLKHEARPLAELRNQSVREFLDGTRKTNNIFCSNPNHRTPTLTs|pl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE promyelocytic leukemia 1 APL, ALL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19967 PML::MCTP2 ENSG00000140464.20::ENSG00000140563.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3440 TRUE 1305 PML ENSG00000140464.20 protein_coding + + chr15:73994673-74047827:+ chr15:73998476:+ chr15:74287014-74340168:+ chr15:74290817:+ MCTP2 ENSG00000140563.16 protein_coding + + chr15:94231538-94483952:+ chr15:94367605:+ chr15:94774767-95027181:+ chr15:94910834:+ chr15:74006104,chr15:74006105 chr15:94345340,chr15:94345338 NA NA chr15:74298445,chr15:74298446 chr15:94888569,chr15:94888567 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none B-box_zinc_finger(100%)|C2_domain(38%),Plant_phosphoribosyltransferase_C-terminal(100%) zf-B_box(100%)|C2(38%),PRT_C(100%) 0 1 1 83 102 ENST00000268058.8 ENST00000357742.10 downstream upstream none AAAGAGTCGGCCGACTTCTGGTGCTTTGAGTGCGAGCAGCTCCTCTGCGCCAAGTGCTTCGAGGCACACCAGTGGTTCCTCAAGCACGAGGCCCGGCCCCT...AACATCTTCTGCTCCAACCCCAACCACCGCACCCCTACGCTGACCAG|GTGTAAAGTGGATATCTCGGCACTCCCTCTGAAGCAAGCCAACTGCCTGGAGCT...TGCTTACAGAACTCCCTGAAAGATGTGAAAGACGTCGGCATTCTACAAGTGAAGGTTTTAAAGGCAGCAGATCTCTTAGCGGCAGATTTCTCAG___GGAAG NIFCSNPNHRTPTLTr|CKVDISALPLKQANCLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE promyelocytic leukemia 1 APL, ALL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 19968 MTMR10::TRPM1 ENSG00000166912.17::ENSG00000134160.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1870 FALSE NA FALSE NA MTMR10 ENSG00000166912.17 protein_coding - - chr15:30938941-30991628:- chr15:30947130:- chr15:31231144-31283831:- chr15:31239333:- TRPM1 ENSG00000134160.16 protein_coding - - chr15:31001065-31161160:- chr15:31003070:- chr15:31293268-31453363:- chr15:31295273:- chr15:30944438,chr15:30944438,chr15:30944443 chr15:31007604,chr15:31058884,chr15:31007606 NA NA chr15:31236641,chr15:31236641,chr15:31236646 chr15:31299807,chr15:31351087,chr15:31299809 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Myotubularin-like_phosphatase_domain(100%)|Tetramerisation_domain_of_TRPM(82%) Myotub-related(100%)|TRPM_tetra(0%) 3 8 7 84 39 ENST00000435680.6 ENST00000558445.6 upstream downstream duplicates(2),mismatches(6) GTCCTACAAG___AGGAGGAAGGAAGAGACTTGAGCTGTTGTGTAGCTTCTCTTGTTCAAGTGATGCTGGATCCCTATTTTAGGACAATTACTGGATTTCAGAGTCTGATACAGAAGGAGgGGGgCATGGCAGGATATCAGTTTCTAGACAGATGCAACCATCTAAAGAGATCAGAGAAAGAG___TCTCCTTTATTTTTGCTATTCTTGGATGCCACCTGGCAGCTGTTAGAACAATATCCTGCAGCTTTTGAGTTCTCCGAAACCTACCTGGCAGTGTTGTATGACAGCACCCGGATCTCACTGTTTGGCACCTTCCTGTTCAACTCCCCTCACCAGCGAGTGAAGCAAAGCACG|AGTTGAAAATATGTCAATGAGGTTGGAAGAAATCAATGAAAGAGAAACTTTTATGAAAACTTCCCTGCAGACTGTTGACCTTCGACTTGCTCAGCTAGAAGAATTATCTAACAGAATGGTGAATGCTCTTGAAAATCTTGCGGGAATCGACAGGTCTGACCTGATCCAGGCACGGTCCCGGGCTTCTTCTGAATGTGAGGCAACGTATCTTCTCCGGCAAAGCAGCATCAATAGCGCTGATGGCTACAGCTTGTATCGATATCATTTTAACGGAGAAGAGT VLQEEEGRDLSCCVASLVQVMLDPYFRTITGFQSLIQKEggMAGYQFLDRCNHLKRSEKESPLFLLFLDATWQLLEQYPAAFEFSETYLAVLYDSTRISLFGTFLFNSPHQRVKQST|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19971 PLA2G6::CHEK2 ENSG00000184381.20::ENSG00000183765.24 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3442 TRUE 1306 PLA2G6 ENSG00000184381.20 protein_coding - - chr22:38111495-38214778:- chr22:38169218:- chr22:38507502-38610785:- chr22:38565225:- CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28734727:- chr22:29083731-29138410:- chr22:29130715:- chr22:38161171 chr22:28735627 NA NA chr22:38557178 chr22:29131615 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none |FHA_domain(100%),Protein_kinase_domain(100%) bZIP_Maf(100%)|FHA(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 4 1 10 41 135 ENST00000402064.5 ENST00000416671.5 upstream downstream duplicates(3),mismatches(1),multimappers(1) GTAGAAGTGCTGAGTAAGCCGAG___ACAGAGGGGGAAGACGGTGGGGCCTCCCCACCTGCCCCGCAGAAGATGCAGTTCTTTGGCCGCCTGGTCAATACCTTCAGTGGCGTCACCAACTTGTTCTCTAACCCATTCCGGGTGAAGGAGGTGGCTGTGGCCGACTACACCTCGAGTGACCGAGTTCGGGAGGAAGGGCAGCTGATTCTGTTCCAGAACACTCCCAACCGCACCTGGGACTGCGTCCTGGTCAACCCCAGGAACTCACAGAGTGGATTCCG|GTCGTGATGTCTCGGGAGTCGGATGTTGAGGCTCAGCAGTCTCATGGCAGCAGTGCCTGTTCACAGCCCCATGGCAGCGTTACCCAGTCCCAAGGCTCCTCCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCAGCACGATGCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACACTGAGCTCCTTAGAGACAGTGTCCACTCAGGAACTCTATTCTATTCCTGAGGACCAAGAACCTGAG MQFFGRLVNTFSGVTNLFSNPFRVKEVAVADYTSSDRVREEGQLILFQNTPNRTWDCVLVNPRNSQSGFr|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift 19972 PLA2G6::CHEK2 ENSG00000184381.20::ENSG00000183765.24 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3442 TRUE 1306 PLA2G6 ENSG00000184381.20 protein_coding - - chr22:38111495-38214778:- chr22:38163415:- chr22:38507502-38610785:- chr22:38559422:- CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28734727:- chr22:29083731-29138410:- chr22:29130715:- chr22:38161171 chr22:28735627 NA NA chr22:38557178 chr22:29131615 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion high none |FHA_domain(100%),Protein_kinase_domain(100%) bZIP_Maf(100%)|FHA(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 10 2 135 ENST00000445591.5 ENST00000416671.5 upstream downstream duplicates(5) CTGAGGGACAGGGCCTGGGGCCAAGTCTCCTCTGCGTTCCTGATGCCTGGTGGTGTGCCACGCTCTCCGTGGGTGCACG|GTCGTGATGTCTCGGGAGTCGGATGTTGAGGCTCAGCAGTCTCATGGCAGCAGTGCCTGTTCACAGCCCCATGGCAGCGTTACCCAGTCCCAAGGCTCCTCCTCACAGTCCCAGGGCATATCCAGCTCCTCTACCAGCACGATGCCAAACTCCAGCCAGTCCTCTCACTCCAGCTCTGGGACACTGAGCTCCTTAGAGACAGTGTCCACTCAGGAACTCTATTCTATTCCTGAGGACCAAGAACCTGAGGACCAAGAACCTGAGGAGCCTACCCCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift 19975 DERA::ENSG00000255910 ENSG00000023697.13::ENSG00000255910.2 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3443 TRUE 1307 DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15911414:+ chr12:16064236-16190315:+ chr12:16064348:+ ENSG00000255910 ENSG00000255910.2 lncRNA + + chr12:19775451-20012261:+ chr12:19923198:+ chr12:19928385-20165195:+ chr12:20076132:+ chr12:15932083,chr12:15932076 chr12:19866369,chr12:19866352 NA NA chr12:16085017,chr12:16085010 chr12:20019303,chr12:20019286 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 0 10 1 190 18 ENST00000526521.5 ENST00000535764.1 downstream upstream duplicates(1),mismatches(1) CCGGGCGCGGCGCAGAGGCGGGCGCCTACCAGCCGGCAGCTCCGGAGCTGCCCGCGCCATGTCCGCGCACAATCGGGGCACCGAGCTCG|ATTGCCCAGCCTCACATATTCCTTCATAGCAACACAAAGGGACTGAGACAATATATAAG___TTAACATCTGCCATGTAGTGGAGGTTCCAGAGAAAAAGTGAGAGAAGCTGAGTCTGCACCCTCAACATGGAGGAAATAAGCTCTCTTAGGACCAAGAACAGAGGACAGAGGAAGGACTCCAGCATGATGGGCACCAAG...TCCTTCTGAGAAAGAGGAG___AGACAGGGTCTTCCTCTTTGCCTAAGCTGGAGCGCATTGGTGTGATCATCGCTCACTGCTGCCTCAAACTCCTGGGCTCATG MSAHNRGTEL|dcpaships* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19976 DERA::ENSG00000255910 ENSG00000023697.13::ENSG00000255910.2 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3443 TRUE 1307 DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15911753:+ chr12:16064236-16190315:+ chr12:16064687:+ ENSG00000255910 ENSG00000255910.2 lncRNA + + chr12:19775451-20012261:+ chr12:19923198:+ chr12:19928385-20165195:+ chr12:20076132:+ chr12:15932083,chr12:15932076 chr12:19866369,chr12:19866352 NA NA chr12:16085017,chr12:16085010 chr12:20019303,chr12:20019286 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 0 2 1 3 18 ENST00000531803.5 ENST00000535764.1 downstream upstream mismatches(1) GTTCACTCTAGCTCGCTGGTTGGAAAACCCAACAACCCAAAAAACAAAACCCAAAACAAACAACCCCCAAGCAG|ATTGCCCAGCCTCACATATTCCTTCATAGCAACACAAAGGGACTGAGACAATATATAAG___TTAACATCTGCCATGTAGTGGAGGTTCCAGAGAAAAAGTGAGAGAAGCTGAGTCTGCgCCCTCAACATGGAG...ATGGGCACCAAGGGATTTTGGTCCTTCTGAGAAAGAGGAG___AGACAGGGTCTTCCTCTTTGCCTAAGCTGGAGCGCATTGGTGTGATCATCGCTCACTGCTG ftlARWLENPTTQKTKPKTNNPQA|dcpaships* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19977 ZNF626::ZNF66 ENSG00000188171.17::ENSG00000160229.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF626 ENSG00000188171.17 protein_coding - - chr19:20619939-20661596:- chr19:20661444:- chr19:20802745-20844402:- chr19:20844250:- ZNF66 ENSG00000160229.13 protein_coding + - chr19:20776304-20809995:+ chr19:20777112:- chr19:20959110-20992801:+ chr19:20959918:- chr19:20624289 chr19:20806965 NA NA chr19:20807095 chr19:20989771 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 8 3 752 74 ENST00000291750.6 unknown upstream downstream duplicates(4),mismappers(14),mismatches(6) GCGGCCTTTGTCTCTCGCTGCAGTCAGAGCTCCAGGTCTGGTTCTTCTCCTAAAGGCCCAGGCTGTGTGGCCCCGTGTCCTGCAGGTATTGGGAGATCCACAGCTAAGACACCGGGACCTCCTGGAAGCCAAAAATG|ACAAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCAGGATTTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCTCACTTCTGCCTCCCGAGAAGCTGGGACTACAGACATTCGCCAACATATCCACCTAATTTTTGTATTTTTAGTAGACAAGGGGTTTCCCCATTTTGGTCAGTCTGGTCTTCAACTCCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAACGTGCGGGGATTACAGGCTTGAACGACCGCGCCCGGCCCCATACAATTTTAATAGCAGA M|trvllcrpgwsavagfqltatsasrvqailsllppeklglqtfanist* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19978 ENSG00000269110::ZNF66 ENSG00000269110.1::ENSG00000160229.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000269110 ENSG00000269110.1 lncRNA - - chr19:20553792-20661583:- chr19:20661444:- chr19:20736598-20844389:- chr19:20844250:- ZNF66 ENSG00000160229.13 protein_coding + - chr19:20776304-20809995:+ chr19:20777112:- chr19:20959110-20992801:+ chr19:20959918:- chr19:20624289 chr19:20806965 NA NA chr19:20807095 chr19:20989771 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 0 8 2 752 74 ENST00000595094.1 unknown upstream downstream duplicates(4),mismappers(14),mismatches(6) GGCCTTTGTCTCTCGCTGCAGTCAGAGCTCCAGGTCTGGTTCTTCTCCTAAAGGCCCAGGCTGTGTGGCCCCGTGTCCTGCAGGTATTGGGAGATCCACAGCTAAGACACCGGGACCTCCTGGAAGCCAAAAATG|ACAAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCAGGATTTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCTCACTTCTGCCTCCCGAGAAGCTGGGACTACAGACATTCGCCAACATATCCACCTAATTTTTGTATTTTTAGTAGACAAGGGGTTTCCCCATTTTGGTCAGTCTGGTCTTCAACTCCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAACGTGCGGGGATTACAGGCTTGAACGACCGCGCCCGGCCCCATACAATTTTAATAGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19980 PPP1R12A::OTOGL ENSG00000058272.19::ENSG00000165899.12 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79845302:- chr12:80167343-80329240:- chr12:80239082:- OTOGL ENSG00000165899.12 protein_coding + - chr12:80099537-80380880:+ chr12:80323639:- chr12:80493317-80774660:+ chr12:80717419:- chr12:79837079,chr12:79837081 chr12:80359710,chr12:80359709 NA NA chr12:80230859,chr12:80230861 chr12:80753490,chr12:80753489 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ankyrin_repeats_(3_copies)(65%),Ankyrin_repeats_(many_copies)(100%)| Ank(95%),Ank_2(94%),Ank_3(85%),Ank_4(96%),Ank_5(95%)| 1 1 7 424 8 ENST00000261207.9 unknown upstream downstream duplicates(4),mismappers(1),mismatches(1) CTTGCTCCAGCGGCGACACGGACGAGGTCCTCAAGCTGCTGCACCGCGGCGCCGACATCAATTACGCCAATGTGGACGGACTCACTGCCCTGCACCAG___GCT...TTCTGGTAGAAAATGGAGCAAATATTAATCAACCTGATAATGAAGGCTGGATACCACTACATGCAGCAGCTTCCTGTGGATATCTTGATATTGCAGA___GTTTTTGATTGGTCAAGGAGCACATGTAGGGGCTGTCAACAGTGAAGGAGATACACCTTTAGATATTGCGGAGGAGGAGGCAATGGAAGAGCTACTTCAAAATGAAGTTAATCGGCAAG|TCTCGCTCTGTCACTCAGGCTCGAGCGCAGTGGCACTATTTCGATTCACCACAACCTCTGCCTCCTGGGTTCAAGTGACTGTCGTGCCTCAGCCTCCCAA___CTGACAAATTTCTCCAACAAGCCACCTGAAGTGCCT LVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ|vslchsgssavalfrftttsaswvqvtvvpqppn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19982 IQCK::PRKCB ENSG00000174628.17::ENSG00000166501.14 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1872 FALSE NA FALSE NA IQCK ENSG00000174628.17 protein_coding + + chr16:19716456-19858467:+ chr16:19827137:+ chr16:19727778-19869789:+ chr16:19838459:+ PRKCB ENSG00000166501.14 protein_coding + + chr16:23835983-24220611:+ chr16:24032136:+ chr16:23847304-24231932:+ chr16:24043457:+ chr16:19839195 chr16:24022976 NA NA chr16:19850517 chr16:24034297 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(50%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) IQ(100%)|C1_1(1%),C2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 3 4 52 11 ENST00000320394.10 ENST00000321728.12 downstream upstream duplicates(3) GAGGAAGCAGCCCTCTACATTCAATCCTTCTGGAGAGCCTGTGTG___GTTCGCTGTGATCCTGAGATTCAAGAACTGCGTCAGTGGCAGAAGAAACTTCGCGAGGCCAAGCACATTCACCAGCAAGTCAAAATTTTCTGGGCCAAGCAAGAACAAAAAG|GACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGATGAAAT...TGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGAC...ATTCCCGATCCCAAAAGgGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATT___TCAGCTGAAAGAAT EEAALYIQSFWRACVVRCDPEIQELRQWQKKLREAKHIHQQVKIFWAKQEQK|gppqqtqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1273h chr16:24203116-24203231:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C beta type AGC PKC PKCa P05771 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE protein kinase C beta 2 adult T-cell lymphoma-leukaemia leukaemia_lymphoma missense 19983 PDE4D::TAFA2 ENSG00000113448.21::ENSG00000198673.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3444 TRUE 1308 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- TAFA2 ENSG00000198673.11 protein_coding - - chr12:61708273-62279150:- chr12:62023779:- chr12:62102054-62672931:- chr12:62417560:- chr5:59058651 chr12:62149219 NA NA chr5:58354478 chr12:62543000 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)|TAFA_family(100%) PDE4_UCR(8%)|TAFA(100%) 2 1 3 122 20 ENST00000502484.6 ENST00000551619.5 upstream downstream duplicates(1),mismappers(1) CCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___GTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|CATGTCAAGTTCAGACTGTAAGGAGTAGATGCAGTAGTGAAGCTGTCCATCTCAGGTGAATTGAAAAAGTAAAGAACTACAAAATGCCATCATTCCCTCTCTGTGTTGATTTCTGGTGAAGCTCAGAG___GATGAGTAAGA...GCTCCAGATGTGACTACTTgTCTTGTTTCTGCAAaCTGTATCCCAAGTGCAgTGTCCTTCTGTCCTGGATGTGTTCCTGGGTCCTATGTTCATTTGCTA DSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATIT|acqvqtvrsrcsseavhlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19984 PDE4D::TAFA2 ENSG00000113448.21::ENSG00000198673.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3444 TRUE 1308 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- TAFA2 ENSG00000198673.11 protein_coding - - chr12:61708273-62279150:- chr12:62070562:- chr12:62102054-62672931:- chr12:62464343:- chr5:59058651 chr12:62149219 NA NA chr5:58354478 chr12:62543000 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)|TAFA_family(100%) PDE4_UCR(8%)|TAFA(100%) 1 0 4 122 0 ENST00000502484.6 ENST00000549456.5 upstream downstream duplicates(2) CACATCTGCGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGATCCGGGCTAATTCTCCAAGCAAATTTTGTtCACAGTCAACGACGGGAGTCCTTCC...GTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|GTGTAGCCCTAACTACTAGCAGAGGCAAGAGAATAGAGCTATGCCACTTCTTCCATCAGTAAGaGAG VRNNFAALTNLQDRAPSKRSPMCNQPSINKATIT|gvalttsrgkrielchffhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19985 PDE4D::TAFA2 ENSG00000113448.21::ENSG00000198673.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3444 TRUE 1308 PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- TAFA2 ENSG00000198673.11 protein_coding - - chr12:61708273-62279150:- chr12:61867426:- chr12:62102054-62672931:- chr12:62261207:- chr5:59058651 chr12:62149219 NA NA chr5:58354478 chr12:62543000 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Phosphodiesterase_4_upstream_conserved_regions_(UCR)(39%)|TAFA_family(100%) PDE4_UCR(8%)|TAFA(100%) 2 1 1 122 18 ENST00000502484.6 ENST00000552075.5 upstream downstream duplicates(3),mismappers(1) CCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATAT___ACACGGAGATGACTTGATTGTGACTCCATTTGCTCAG___GTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAA___AAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAG|GATGAGTAAGAGATACTTACAGAAAGCAACAAAAGGAAAACTGCTAATAATAATATTTATTGTAACCTT...GGGGGAAAGTTGTATCCAGTGCAAACCATCATAAAG___CTCACCATGTTAAAACGGGAACTTGTGAGGTGGTGGCACTCCACAGATGCTGTAATAAGAACAAGATAGAAGAACGGTCACAAACAGTCAAGTGCTCCTGCTTCCCTGGGCAGGTGGCAGGCACCACGCGAGCTGCTCC LSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATIT|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19988 ZFAND3::LINC02520 ENSG00000156639.12::ENSG00000204110.7 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:37820016:+ chr6:37787503-38122400:+ chr6:37787792:+ LINC02520 ENSG00000204110.7 lncRNA + + chr6:37507348-37536266:+ chr6:37534276:+ chr6:37475124-37504042:+ chr6:37502052:+ chr6:37884759 chr6:37524947 NA NA chr6:37852535 chr6:37492723 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none A20-like_zinc_finger(31%)| zf-A20(0%)| 1 3 2 195 15 ENST00000287218.9 ENST00000570443.2 downstream upstream duplicates(1),mismatches(1) CCACCGCCTCCTCAGAGCGGGGCCCGGGCCCAGCCGCCGCCACCGCTGCCGCCGCCGAGCTCCGCCGCCGCCGAGCACCATGGGAGACGCTGGGAGCGAGCGCAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG|GTACTGCCCAGTTTTAGCAATGAAAGTCCCACGTCACGGGAAACCTCTGAGTCCTGGAgAAATCAAGATG___GTTGCCTGGAAGTGATTGGAGGaGAAGGAATGCCAATTCTCAGACATTTCCAGCTCTCCTTACAGGCGAGG MGDAGSERSKAPSLPPRCPCGFWg|ycpvlamkvprhgkplspgeikmvawk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19990 BTBD8::ASL ENSG00000189195.15::ENSG00000126522.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3445 TRUE 1309 BTBD8 ENSG00000189195.15 protein_coding + + chr1:92080305-92184725:+ chr1:92102669:+ chr1:92545862-92650282:+ chr1:92568226:+ ASL ENSG00000126522.17 protein_coding + + chr7:66075800-66094697:+ chr7:66088807:+ chr7:65540787-65559684:+ chr7:65553794:+ chr1:92106716,chr1:92106716 chr7:66087197,chr7:66087194 NA NA chr1:92572273,chr1:92572273 chr7:65552184,chr7:65552181 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none BTB/POZ_domain(46%)|Argininosuccinate_lyase_C-terminal(100%),Lyase(22%) BTB(24%)|Lyase_1(2%) 4 0 1 12 292 ENST00000635934.1 ENST00000304874.14 downstream upstream mismatches(1) AAAGGAAGGGGCCGTGTGAGCGGCGCCGGCTGAAGGCGACGGTGTCGGAGCAGCTCAGCCAGGATTTGCTCAG___GCTTCTAAGGGAAGAATTCCATACAGAT...CTTTGTTCAAAGCACACAAAGCAGTCCTTTTAGCAAGAGTTCCTGACTTCTATTTTCATACTATTGGACAGACATCAAATAGTTTAACAAATCAGGAGCCTATTGCTGTGGAGAATGTTGAAGCTTTAGAATTTAGAACGTTTTTACA___GATTATATATTCATCAAACAGAAACATAAAAAACTATGAAGAGGAAATTCTTAGGAAAAAGATAATGGAGATTGGG...TCTTCAGAAGCATGAAATTCCAGAGGATATCAGTGACAGAGATGATGATTTCATTTCCAATG|CCGAGTTCCTGTTCTGGGCTTCGCTGTGCATGACCCATCTCAGCAGGATGGCCGAGGACCTCATCCTCTACTGCACCAAGGAATTCAGCTTCGTGCAGCTCTCAGATGCCTACAG___CACGGGAAGCAGCCTGATGCCCCAGAAGAAAAACCCCGACAGTTTGGAGCTGATCCGGAGCAAGGCTGGG LQKHEIPEDISDRDDDFISN|aEFLFWASLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19991 BTBD8::ASL ENSG00000189195.15::ENSG00000126522.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3445 TRUE 1309 BTBD8 ENSG00000189195.15 protein_coding + + chr1:92080305-92184725:+ chr1:92102669:+ chr1:92545862-92650282:+ chr1:92568226:+ ASL ENSG00000126522.17 protein_coding + + chr7:66075800-66094697:+ chr7:66087729:+ chr7:65540787-65559684:+ chr7:65552716:+ chr1:92106716,chr1:92106716 chr7:66087197,chr7:66087194 NA NA chr1:92572273,chr1:92572273 chr7:65552184,chr7:65552181 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none BTB/POZ_domain(46%)|Argininosuccinate_lyase_C-terminal(100%),Lyase(29%) BTB(24%)|Lyase_1(11%) 1 0 1 12 227 ENST00000635934.1 ENST00000304874.14 downstream upstream mismatches(1) ATACTATTGGACAGACATCAAATAGTTTAACAAATCAGGAGCCTATTGCTGTGGAGAATGTTGAAGCTTTAGAATTTAGAACGTTTTTACA___GATTATATATTCATCAAACAGAAACATAAAAAACTATGAAGAGGAAATTCTTAGGAAAAAGATAATGGAGATTGGGATATCACAAAAGCAACTTGACATCAGTTTTCCAAAGTGTGAAAACTCATCTGATTGTTCTCTTCAGAAGCATGAAATTCCAGAGGATATCAGTGACAGAGATGATGATTTCATTTCCAATG|AACTCAACTTTGGGGCCATCACTCTCAAC TIGQTSNSLTNQEPIAVENVEALEFRTFLQIIYSSNRNIKNYEEEILRKKIMEIGISQKQLDISFPKCENSSDCSLQKHEIPEDISDRDDDFISN|eLNFGAITL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19994 LETM1::MFSD10 ENSG00000168924.15::ENSG00000109736.15 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LETM1 ENSG00000168924.15 protein_coding - - chr4:1811479-1856156:- chr4:1855869:- chr4:1813206-1857883:- chr4:1857596:- MFSD10 ENSG00000109736.15 protein_coding - - chr4:2930561-2934834:- chr4:2933944:- chr4:2932288-2936561:- chr4:2935671:- chr4:1850092,chr4:1850094 chr4:2935031,chr4:2935030 NA NA chr4:1851819,chr4:1851821 chr4:2936758,chr4:2936757 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |Major_Facilitator_Superfamily(100%) |MFS_1(100%),Sugar_tr(100%) 0 4 1 62 756 ENST00000302787.3 ENST00000507272.5 upstream downstream duplicates(3),mismatches(1) GCAGGAGGCCGGAGCGGCCGCCGCGCCCGAGCACATGGCGTCCATCTTACTGAGGAGCTGCCGCGGCCGGGCGCCCGCCCGCCTCCCGCCGCCGCCTCGGTACACCGTCCCGCGGG|GCCAGGTCAGAGCAGCCCACCATGGGATGGGGAGGGGGTGGAGGCTGCACCCCGCGCCCACCCATCCACCAGCAGCCGCCGGAGCGCCGCGTGGTCACCGTTGTCTTTCTCGGCCTCCTGCTGGACCTCCTGGCCTTCACGCTGCTGCTGCCCCTGCTGCCCGGGCTGTTGGAGAGCCACGGCCGTGCCCAC___GACCCCCTCTATGGCTCCTGGCAGGGCGGGGTGGACTGGTTTGCCACCGCCATCGGGATGCCAGTGGAGAAGAGGTACAACAGTGTCCTGTTCGGAG___TTTCTGTGTGCGCCACTCACTGGGGCCACCTCTGACTGCTTGGGGAGGCGCCCGGTGATGCTGCTGTGCCTG___ATGGGTGTGGCCACCTC MASILLRSCRGRAPARLPPPPRYTVPR|gqvraahhgmgrgwrlhpapthppaaagaprghrclsrppagppglhaaaapaaravgeprpcprpplwllagrgglvchrhrdasgeevqqcpvrsfcvrhslgppltawggar* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19995 ENSG00000228509::ENSG00000228033 ENSG00000228509.7::ENSG00000228033.6 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000228509 ENSG00000228509.7 lncRNA - - chr2:190672297-190843734:- chr2:190842761:- chr2:191537023-191708460:- chr2:191707487:- ENSG00000228033 ENSG00000228033.6 lncRNA - - chr2:52722671-52961452:- chr2:52910024:- chr2:52949809-53188590:- chr2:53137162:- chr2:190816541,chr2:190816543 chr2:52930967,chr2:52930966 NA NA chr2:191681267,chr2:191681269 chr2:53158105,chr2:53158104 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 0 2 2 18 3 ENST00000676152.1 ENST00000421575.6 upstream downstream duplicates(1),mismatches(1) CTTCATTCACGTACCCACTGTGTCAGTTCTGGGATGACTAAAATCAACTGG___GTCATCATGAGTGAAGTCTTGAGCCACTGAGCCACTACCACCTTGTGCCAAATACTATCTGTGCCCTGCCTGCCAACCAGGATGACAACCCTTCACCTGCCAGGTG|TTCTATCAGATTTCGCTTCAAAAATTTTGGACCTTTGTTACTAGGTACATAAACATCTGAG___GTGTTTATTGGAGCTCTTTGCCTAGAACTGATAATTGGATTCATGGTATTCTGGAGAACAAGGTATTTATGTGATTTAATGATAGAGAATAGTCCTCTGGCATAATTTCTGGGTAAACCTGTGATGATTTCAAAAGTTCCTCTAGTTATTTCTGTGAAATCCCTCTCCTGAGTGGCATTTGGAAAATCCTTTTTGGAATAAATGAATATCATGCTGGACATGCACAAAGTTGTAAATGGGAAACATCATCGCTGCTGCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 19998 CPNE3::ENSG00000253553 ENSG00000085719.13::ENSG00000253553.9 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPNE3 ENSG00000085719.13 protein_coding + + chr8:86514435-86561498:+ chr8:86515499:+ chr8:87526664-87573726:+ chr8:87527727:+ ENSG00000253553 ENSG00000253553.9 lncRNA + - chr8:88326836-88887573:+ chr8:88588611:- chr8:89339065-89899802:+ chr8:89600840:- chr8:86516542 chr8:88593944 NA NA chr8:87528770 chr8:89606173 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 0 1 1 98 3 ENST00000517490.6 unknown downstream downstream none CCGGACGCTGCCAACCTGTTCTCCACCGTCGCTCGACTTCCACCTCTAAGACTCCCAC___GAAACTCAGGTTGAATAATTCATCAAATTACACAACTG|GTTAACAATCTGGAAATTAAATCAAGGTTCTGCTTATACAGTACCCATAAGAGGCACAAGAATATCTTTTAAAATATCAGGAGGCACTTgTCTTCAAGACTGTACATGAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20001 TAB1::GRAP2 ENSG00000100324.14::ENSG00000100351.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1874 FALSE NA FALSE NA TAB1 ENSG00000100324.14 protein_coding + + chr22:39399778-39437060:+ chr22:39399835:+ chr22:39795783-39833065:+ chr22:39795840:+ GRAP2 ENSG00000100351.17 protein_coding + + chr22:39901084-39973721:+ chr22:39965990:+ chr22:40297088-40369725:+ chr22:40361994:+ chr22:39415059,chr22:39415038,chr22:39415060 chr22:39961422,chr22:39961232,chr22:39961420 NA NA chr22:39811064,chr22:39811043,chr22:39811065 chr22:40357426,chr22:40357236,chr22:40357424 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none |SH2_domain(47%),SH3_domain(50%) |SH2(1%),SH3_1(0%),SH3_2(1%),SH3_9(0%) 0 20 0 105 48 ENST00000216160.11 ENST00000344138.9 downstream upstream duplicates(7),low_entropy(4) CCCGCAGGGGTTCCTCCAAGATGGCGGCGCAGAGGAGGAGCTTGCTGCAGAGT|GCATGAGGATGACGTTCAACACTTCAAGGTCATGCGAGACAACAAGGGTAATTACTTTCTGTGGACTGAGAAGTTTCCATCCCTAAATAAGCTGGTAGACTACTACAGGACAAATTCCATCTCCAGACAGAAGCAGATCTTCCTTAGAGACAGAACCCGAGAAGACCAG___GGTCACCGGGGCAACAGCCTGGACCGGAGGTCCCAGGGAGGCCCACACCTCAGTGGGGCTGTGGGAGAAGAAATCCGACCTTCGATGAACCGGAAGCTGTCGGATCcCCCCCCG?CCCTTCCCCTGCAGCAGCACCAGC?CCAGCCACAGCCTCCGCAATATGCCCCAGCGCCCCAGCAGCTGCAGCAGCCCCCAC MAAQRRSLLQS|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20009 NNT::CDH18 ENSG00000112992.18::ENSG00000145526.12 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NNT ENSG00000112992.18 protein_coding + + chr5:43602692-43707405:+ chr5:43659350:+ chr5:43602794-43707507:+ chr5:43659452:+ CDH18 ENSG00000145526.12 protein_coding - + chr5:19471296-20575873:- chr5:20019591:+ chr5:19471405-20575982:- chr5:20019700:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none 4TM_region_of_pyridine_nucleotide_transhydrogenase__mitoch(100%),Alanine_dehydrogenase/PNT__C-terminal_domain(100%),Alanine_dehydrogenase/PNT__N-terminal_domain(100%),NAD(P)_transhydrogenase_beta_subunit(56%)| AlaDh_PNT_C(100%),AlaDh_PNT_N(100%),PNTB(14%),PNTB_4TM(100%)| 1 0 4 630 1 ENST00000264663.9 unknown downstream upstream none CTGGGTTCAGTGTCTGCTCTCTCTGCTGTCATG___GGTGTGACTTTGACAGCTGCTATTGGGGGTGCTGACATGCCCGTCGTTATCACTGTGCTGAACAGCTACTCAGGCTGGGCCCTGTGTGCAGAGGGCTTCCTGCTCAACAACAATCTGCTGACCATCGTGGGTGCACTCATAGGCTCGTCTGGTGCTATCCTGTCATACATCATGTGTGTG|CATACCTGCTTCCCCTCACCTTCTGCCATGATaGTACATTTCCTGAGGCCTCCCAGCCATGCTTCCTGTACAGGCTGTGGAACT___AGGGTGTATGGAAATGCCTGGATGTCTATGAAGAAGTCTG LGSVSALSAVMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGALIGSSGAILSYIMCV|htcfpspsamivhflrppshasctgcgtrvygnawmsmkks NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20010 LINC01473::LINC01090 ENSG00000237877.8::ENSG00000231689.3 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01473 ENSG00000237877.8 lncRNA - - chr2:186032884-186486005:- chr2:186215019:- chr2:186897611-187350732:- chr2:187079746:- LINC01090 ENSG00000231689.3 lncRNA - - chr2:187712816-188384365:- chr2:188228583:- chr2:188577543-189249092:- chr2:189093310:- chr2:186105207,chr2:186105214 chr2:188285394,chr2:188285398 NA NA chr2:186969934,chr2:186969941 chr2:189150121,chr2:189150125 NA NA sense sense unknown exon/splice-site intron duplication medium none none none 0 0 4 10 0 ENST00000667056.1 unknown upstream downstream mismappers(1) CCACCTTGCCTCCCAAAATGCTCCTCCAAAAAAGGAGTGTGCCGCCACACCCAGCCTGAGCAACTTTTGTTTTTAAG___GTGAAGGACATGTTTGCTTCCCTTTCCACCATGATTGCAAGTTTCCTGAGGCCTCCCTAGCCATGCTGAACT|GTTATTTAAATTTAATTTACTTTTTTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20011 ANO2::STRAP ENSG00000047617.17::ENSG00000023734.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANO2 ENSG00000047617.17 protein_coding - - chr12:5531869-5946232:- chr12:5732520:- chr12:5641035-6055398:- chr12:5841686:- STRAP ENSG00000023734.11 protein_coding + + chr12:15882387-15903478:+ chr12:15894047:+ chr12:16035321-16056412:+ chr12:16046981:+ chr12:5660979,chr12:5660981,chr12:5660984 chr12:15893991,chr12:15894004,chr12:15893986 NA NA chr12:5770145,chr12:5770147,chr12:5770150 chr12:16046925,chr12:16046938,chr12:16046920 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Calcium-activated_chloride_channel(29%),Dimerisation_domain_of_Ca+-activated_chloride-channel__anoctamin(100%)|WD_domain__G-beta_repeat(49%) Anoct_dimer(100%),Anoctamin(28%)|WD40(39%) 1 3 0 8 738 ENST00000682330.1 ENST00000419869.7 upstream upstream duplicates(2) GCGCAGGCCAGCCACCTGTTTGACAACCCTGCCACCGTCTTCTTCTCTATCTTCATGGCTCTGTGGG___CTACCATGTTCCTGGAAAACTGGAAGAGGCTACA...CAAAGTTCGAGAGAAAATGCTAAAGGAGAGCAACCAGTCTGCTGTCCAGAAATTGGAAACAAACACGACGGAGTGTGGCGATGAG|AACCTAAGGAAATTAGTGGTCATACTTCTGGTATAAAAAAAGCTCTGTGGTGCAGTGAGGATAAACAGATTCTTTCTGCTGATGACAAAACTGTTCG___ACTTTG...AATTTTAATATGTCTGTTAGTAGTATGGAATATATTCCTGAGGGAGAGATTTTGGTTATAACTTATGGACGATCTATTGCTTTTCATAGTGCAGTAAG___TTTGGAC KVREKMLKESNQSAVQKLETNTTECGDE|nlrklvvillv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20014 ADAMTS17::SNAPC5 ENSG00000140470.15::ENSG00000174446.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAMTS17 ENSG00000140470.15 protein_coding - - chr15:99971437-100342005:- chr15:100330889:- chr15:100511642-100882210:- chr15:100871094:- SNAPC5 ENSG00000174446.13 protein_coding - - chr15:66490135-66497780:- chr15:66490717:- chr15:66782473-66790118:- chr15:66783055:- chr15:100310490,chr15:100310493,chr15:100310509 chr15:66493783,chr15:66493783,chr15:66493783 NA NA chr15:100850695,chr15:100850698,chr15:100850714 chr15:66786121,chr15:66786121,chr15:66786121 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion medium none Reprolysin_family_propeptide(100%)| Pep_M12B_propep(100%)|Pkinase(100%) 2 1 0 4 929 ENST00000268070.9 ENST00000563480.6 upstream downstream duplicates(1) CTTCACTCCGGCTGGCGCCGCCGCCTAGCGCGCTCCTGCTTCGCCGCCACGGTCCGGGGGGGCTGCCGGTCCCGGGTACCATGTGTGACGGCGCCCTGCTG...CAACAACTCCCAGGGCCCATTCAGTGGACGAGAACATCTGATCAGGCGCAAATGGTCCTTGACCCCCAGCCCTTCTGCTGAGGCCCAGAGACCTGAGCAGCTCTGCAAGGTTCTAACAG|GTGAAATGCACATCTGAACAGAGACAGGCATGGGAAGGAGGCCCAAAAGCGACATGGCAAACCACCGGGCAGGGGACTCGCTCTTTGTTGCTTCCCAA NNSQGPFSGREHLIRRKWSLTPSPSAEAQRPEQLCKVLT|gemhi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20020 LINC02071::ZDHHC14 ENSG00000249383.2::ENSG00000175048.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC02071 ENSG00000249383.2 lncRNA - - chr17:51312609-51335165:- chr17:51333000:- chr17:49389970-49412526:- chr17:49410361:- ZDHHC14 ENSG00000175048.17 protein_coding + - chr6:157381133-157678157:+ chr6:157542729:- chr6:157802165-158099189:+ chr6:157963761:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site CDS translocation/5'-5' medium none none none 0 2 0 3 66 ENST00000514726.1 unknown upstream downstream duplicates(2) GAACAGCTCCGGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG|ATCGGCGGCTTCATCAGG?GTGGCTCGTGGGAGGACTCCGGGGTCGCTGAAGCTGGTGCGGAGCAGGGTCCCCATCACAAAGAAGAACAGGATGCCAGCGAC...TTTTCACCGCCAGGTACGGACAGCTGCCGACAGGTTGGACAGACCGGAGAGAAGGGGAAAAGAAAGGAAATACAATGTTAGGAATCAACgGTAAGCAGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20022 FAT3::NPAT ENSG00000165323.16::ENSG00000149308.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAT3 ENSG00000165323.16 protein_coding + + chr11:92224818-92896473:+ chr11:92355404:+ chr11:91957984-92629639:+ chr11:92088570:+ NPAT ENSG00000149308.17 protein_coding - - chr11:108157215-108222638:- chr11:108194017:- chr11:108027942-108093365:- chr11:108064744:- chr11:92450116,chr11:92450117 chr11:108195545,chr11:108195544 NA NA chr11:92183282,chr11:92183283 chr11:108066272,chr11:108066271 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Cadherin_domain(21%)|NPAT_C_terminus(100%) Cadherin(0%)|NPAT_C(100%) 1 1 0 27 98 ENST00000525166.6 ENST00000278612.9 downstream downstream duplicates(3),mismatches(2) CTTGAAGATCTCCCTGTTGGCACTGTCATTGCTTGGCTTGAGACCCATGATCCAGATCTTGGACTGGGGGGTCAAGTGCGCTATTCTTTGGTCAATGACTA...GGAAAACTCACGCATTGGAACAAGCGTGCTGCAGGTGACTGCTCGAGATGAAGACTCCGGAAGGGATGGAGAGATCCAGTACTCCATCAGGGATGGCAGTGGTCTTGGAAGGTTCAGTATAGACGACGAGAGTG|TCCTTATTTGGAAAAAACTTGACAACAATTTTAAATGAGTATGTAGCTATGAAAACAAAAG___AAACATCAAATAATGTCCCAGCAATAATGTCATCTCTATGGAAGAAATTGGACCATACACTTTCTCAGATCAG___GAGCATGCAAAGTTCCCCAAGGTTTGCTGGCAGTCAGAGAG___CCCGAACGAGAACTGGAATTGCAGAAATCAAACGGCAGAGAAAGCTTGCATCTCAAACAGCTCCA ENSRIGTSVLQVTARDEDSGRDGEIQYSIRDGSGLGRFSIDDES|vliwkkldnnfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE FAT atypical cadherin 3 2 SCC, colon adenocarcinoma, gastric adenocarcinoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20044 GPC6::LINC00440 ENSG00000183098.12::ENSG00000234660.2 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:93830545:+ chr13:93879060-95060274:+ chr13:94482798:+ LINC00440 ENSG00000234660.2 lncRNA + + chr13:89181324-89280240:+ chr13:89269632:+ chr13:89833578-89932494:+ chr13:89921886:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Glypican(42%)| Glypican(51%)| 0 1 1 519 6 ENST00000377047.9 ENST00000653072.1 downstream upstream none GCCATTTGGAGACGTGCCCCGGAAACTGAAGATTCAGGTTACCCGCGCCTTCATTGCTGCCAGGACCTTTGTCCAGGGGCTGACTGTGGGCAGAGAAGTTGCAAACCGAGTTTCCAAG|CCTATAaTCTTCCTGCATTTTCAGTGACCTCACTGACTGGAAACTGGG...CTCACAAG___TGTCATAATACACCATGAGGTGGTTGGGTCCCATTTCCAGAACAACCAGAGTGACGTCTGAACAATGCTCTCTAAACAAGATCTTCATGTCTG PFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRVSK|piiflhfq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20045 FAM81A::PEAK1 ENSG00000157470.12::ENSG00000173517.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM81A ENSG00000157470.12 protein_coding + + chr15:59372693-59523555:+ chr15:59402358:+ chr15:59664892-59815754:+ chr15:59694557:+ PEAK1 ENSG00000173517.11 protein_coding - - chr15:77100656-77420144:- chr15:77182040:- chr15:77392998-77712486:- chr15:77474382:- chr15:59411770 chr15:77225251 NA NA chr15:59703969 chr15:77517593 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 0 0 2 22 ENST00000560394.5 ENST00000560626.6 downstream downstream none CGCTGCGGACCCAGCTCGCTCCTGGTAGCAAGACCCGAACT___ATCCAGAACATTTCTGCCTTCAACTCCAGCcAGGATCTGAAGGTCCAGGACCTTAGGAAAGCTGCCTGCAGAGAGGTGGAGAG|ATTGATCATTCTTAGAAGAGCTGCTGTAACACATAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Pseudopodium-enriched atypical kinase 1 Other NKF3 Q9H792 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20046 DMXL2::SLIT3 ENSG00000104093.14::ENSG00000184347.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51622459:- chr15:51739908-51915030:- chr15:51914656:- SLIT3 ENSG00000184347.16 protein_coding - - chr5:168661740-169301139:- chr5:168883336:- chr5:168088745-168728143:- chr5:168310341:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(80%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(65%) |EGF(100%),LRRCT(100%),LRRNT(59%),LRR_5(20%),LRR_8(22%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 0 1 0 120 567 ENST00000251076.9 ENST00000519560.6 upstream downstream none TCTGCATCAGGTCCTCACCGGAGCTGTCAACCCTGGAGACAACTGCTACTCCGTGGGCAGCGTCGGGGATGTCCCCTTCACG|AGATTTGAGTGAAAACCAG...GCAGAAGAAGGAGTACGTGTGCCCAG___CCCCCCACTCGGAGCCCCCATCCTGCAATGCCAACTCCATCTCCTGCCCTTCGCCCTGCACGTGCAGCAATAACA LHQVLTGAVNPGDNCYSVGSVGDVPFT|rfe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-218-2 chr5:168768146-168768255:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20051 SLC25A3::ANKS1B ENSG00000075415.15::ENSG00000185046.21 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1877 TRUE 3451 TRUE 1310 SLC25A3 ENSG00000075415.15 protein_coding + + chr12:98593591-98606379:+ chr12:98594135:+ chr12:98987369-99000157:+ chr12:98987913:+ ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99246864:- chr12:99120235-100378714:- chr12:99640642:- chr12:98595407,chr12:98595391,chr12:98595406 chr12:99381178,chr12:99381180,chr12:99381179 NA NA chr12:98989185,chr12:98989169,chr12:98989184 chr12:99774956,chr12:99774958,chr12:99774957 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(100%) |PID(100%),SAM_1(100%),SAM_2(100%),WD40(100%) 21 10 22 2282 51 ENST00000228318.8 ENST00000547776.6 downstream downstream duplicates(17),mismatches(2) ACCTTTCCAAGGGAGTGGTTGTGTGATCGCCATCTTAGGGA___AAAGATGTTCTCGTCCGTGGCGCACCTGGCGCGGGCGAACCCCTTCAACACGCCACATCTGCAGCTGGTGCACGATGGTCTCGGGGACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCAGCCCCGCCGCCCTCGCAACCTGGCAGCCGCCGCCGTGGAAG|ATGACCTCTCCCGACAGGATGACAATGATCCCCCAAAAGAATATGATCCTGGGCAATTTGCAGGCCTGCTCCATGGATCCTCTCCgGCCTGTGAGTCCCCTGAAAATCCATTTCATCTCTATGGGAAAAGAGAACAATGTGAAAAAGGACAAGATGAAGTCAGTTTGGCAAACAGTCCTTTGCCTTTCAAGCAGTCTCCAATAGAAAATAACTCAGAACCTTTGGTAAAGAAAATTAAACCCAAAGTGGTCAGTAGAACAATTTTTCACAAAAAAAG MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSPGPTGQPRRPRNLAAAAVE|dDLSRQDDNDPPKEYDPGQFAGLLHGSSPACESPENPFHLYGKREQCEKGQDEVSLANSPLPFKQSPIENNSEPLVKKIKPKVVSRTIFHKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20052 SLC25A3::ANKS1B ENSG00000075415.15::ENSG00000185046.21 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3451 TRUE 1310 SLC25A3 ENSG00000075415.15 protein_coding + + chr12:98593591-98606379:+ chr12:98594135:+ chr12:98987369-99000157:+ chr12:98987913:+ ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:98832136:- chr12:99120235-100378714:- chr12:99225914:- chr12:98595407,chr12:98595391,chr12:98595406 chr12:99381178,chr12:99381180,chr12:99381179 NA NA chr12:98989185,chr12:98989169,chr12:98989184 chr12:99774956,chr12:99774958,chr12:99774957 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Phosphotyrosine_interaction_domain_(PTB/PID)(100%),SAM_domain_(Sterile_alpha_motif)(9%) |PID(100%),SAM_1(0%),SAM_2(0%),WD40(100%) 1 0 1 2282 108 ENST00000228318.8 ENST00000547776.6 downstream downstream none ATCTTAGGGA___AAAGATGTTCTCGTCCGTGGCGCACCTGGCGCGGGCGAACCCCTTCAACACGCCACATCTGCAGCTGGTGCACGATGGTCTCGGGGACCTC...GGCAGCCGCCGCCGTtGAAG|GTTTTAAAAATCAATTTGATTGGCCACAGGAAACGTATTTTGGCATCcCTGGGAGACAGGCTGCACGcCGATCCCCCACAG AAAAVE|gfknqfdwpqetyfgipgrqaarrspt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20053 MAP3K4::C6orf118 ENSG00000085511.20::ENSG00000112539.15 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1878 TRUE 3452 TRUE 1311 MAP3K4 ENSG00000085511.20 protein_coding + + chr6:160991727-161117385:+ chr6:160992083:+ chr6:161412759-161538417:+ chr6:161413115:+ C6orf118 ENSG00000112539.15 protein_coding - - chr6:165279664-165309605:- chr6:165290067:- chr6:165693153-165723094:- chr6:165703556:- chr6:161011148,chr6:161011146 chr6:165292234,chr6:165292236 NA NA chr6:161432180,chr6:161432178 chr6:165705723,chr6:165705725 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none MEKK4_N(0%)| 12 22 13 103 50 ENST00000366919.6 ENST00000230301.9 downstream downstream duplicates(14),mismatches(4) CCGCGGCGCGCACGGCTCCTGCGGCGGGGTAGAGGCGGAGGCGGAGTCGAGTCACTCCCGCACTTCGGGGCTCCGGTGCCCCGCGCCAGGCTGCAGCTTACTGCCCGCCGCGGCCATGCGGGGCTCCGTGCACGGATGAGAGAAGCCGCTGCCGCGCTGGTCCCTCCTCCCGCCTTTGCCGTCACGCCTGCCGCCGCCATGGAGGAGCCGCCGCCACCGCCGCCGCCGCCACCACCGCCACCGGAACCCGAGACCGAGTCAGAACCCGAGTGCTGCTTGGCGGCGAG|AATCATCTGAGAAACATATAATTGATGAAAACCGACTTACTCTTACTGAGAAGGTTGAAAAGAAGAGGTGTGAAATACTCAGTAAGTGGGATGAGATACAAGCTCTGGAAAAAGAAATTAAAACAACTTTGGTTCATACTGGAATTTCAGATATCACTGAGAATAGGATTAAAAGCATAGAG___CATGAAGCTATACAATTGGAAA MREAAAALVPPPAFAVTPAAAMEEPPPPPPPPPPPPEPETESEPECCLAAr|ii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase 4 STE STE11 Q9Y6R4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20054 MAP3K4::C6orf118 ENSG00000085511.20::ENSG00000112539.15 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3452 TRUE 1311 MAP3K4 ENSG00000085511.20 protein_coding + + chr6:160991727-161117385:+ chr6:160992083:+ chr6:161412759-161538417:+ chr6:161413115:+ C6orf118 ENSG00000112539.15 protein_coding - - chr6:165279664-165309605:- chr6:165281693:- chr6:165693153-165723094:- chr6:165695182:- chr6:161011148,chr6:161011146 chr6:165292234,chr6:165292236 NA NA chr6:161432180,chr6:161432178 chr6:165705723,chr6:165705725 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none MEKK4_N(0%)| 2 4 2 103 79 ENST00000366919.6 ENST00000230301.9 downstream downstream none CCAGGCTGCAGCTTACTGCCCGCCGCGGCCATGCGGGGCTCCGTGCACGGATGAGAGAAGCCGCTGCCGCGCTGGTCCCTCCTCCCGCCTTTGCCGTCACGCCTGCCGCCGCCATGGAGGAGCCGCCGCCACCGCCGCCGCCGCCACCACCGCCACCGGAACCCGAGACCGAGTCAGAACCCGAGTGCTGCTTGGCGGCGAG|CATGAAGCTATACAATTGGAAACAGAAAATATGATTTTAAAGAAGAAAATAAAA___GGGCCTTTGGAAATTTATCAAGGAATTTGTAAAATCAGAGGAAACAGAAGATAACGCTCAAGTGGCTGAACAAATGGCCAGTGGAAATTCTTAACTTCCATGTATGTAGCATGGATATTTGCAGATGCATATACATTCATAAAGATACATTTagTTTCATCAGCTTTAATCTCTAGgAAAATTAATGTGGTA MREAAAALVPPPAFAVTPAAAMEEPPPPPPPPPPPPEPETESEPECCLAAs|mklynwkqki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase 4 STE STE11 Q9Y6R4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20055 QKI::ZDHHC14 ENSG00000112531.17::ENSG00000175048.17 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA QKI ENSG00000112531.17 protein_coding + + chr6:163414000-163578592:+ chr6:163415335:+ chr6:163835032-163999624:+ chr6:163836367:+ ZDHHC14 ENSG00000175048.17 protein_coding + - chr6:157381133-157678157:+ chr6:157620898:- chr6:157802165-158099189:+ chr6:158041930:- chr6:163428956,chr6:163428957 chr6:157648957,chr6:157648956 NA NA chr6:163849988,chr6:163849989 chr6:158069989,chr6:158069988 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Homodimerisation_region_of_STAR_domain_protein(64%)| STAR_dimer(0%)| 12 17 11 181 79 ENST00000361752.8 unknown downstream downstream duplicates(6),mismatches(2) TGAGCTGCGGAGCCTGGAATATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAAGCCCACCCCAGATTACCTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTTCTGCGGGATCTTCAACCACCTCGAGCGGCTGCTGGACGAAG|GTAAGAAAAGTGCAGATGGAGGAGTCAGCATTGGAACCCACACGTTCATCTGCACCTCAGCCACCACCTGTGACTGCCTCACACTCCAATTCTCTGCTGGTTGCTGTGCCAGAGTGCCCTGAGGACCCAAAGCGTCTCTGCTGGAGCAGACACTCAGGCTGATCGGGTGATGGGTACCCAAGGCCCAGCATGGCAGCAGGAATGTGGCCACAAgGGGACCTGCCACACCAGGCCTGGCCTTTGTGTCCAGGGTCCCTTGGGACTCTGCAGCACAAGAAAAGAACCTGCCCATGTGTGGAGATATCCACCCTCAATCAAGTCAAGGTGGCCTCATCCTCAGCAAAGTGAATGTTGGAAGAAGCAGAAACTTCTTACAGAGACATGGATTTGATAAAGCTGCTTGGCAAACATTATTGTTCaGATTGTGGAGCTTGGAGGGTGCTAGGGTT MVGEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDE|gkksadggvsigthtfictsattcdcltlqfsagccarvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE QKI, KH domain containing, RNA binding 1 Yes angiocentric glioma, colorectal cancer epithelial, other oncogene, TSG missense, frameshift, translocation FALSE NA NA NA NA NA NA NA NA NA 20056 MED29::FREM2 ENSG00000063322.15::ENSG00000150893.11 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1879 FALSE NA FALSE NA MED29 ENSG00000063322.15 protein_coding + + chr19:39391303-39400641:+ chr19:39393637:+ chr19:39881943-39891281:+ chr19:39884277:+ FREM2 ENSG00000150893.11 protein_coding + + chr13:38687077-38887131:+ chr13:38880284:+ chr13:39261214-39461268:+ chr13:39454421:+ chr19:39396659 chr13:38879124 NA NA chr19:39887299 chr13:39453261 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Mediator_complex_subunit_29(51%)| Med29(33%)| 3 13 7 167 35 ENST00000315588.11 ENST00000280481.9 downstream upstream duplicates(5),mismatches(2) AGCAAGCTTCAGCGGCTTCCTCAGCTGCTGGTGTATCGGGTCCTAGTTCGGCTGGCGG?CCGGG?CCCCAGCAGCAGCCGCAACCGCCAGCACcACTGGTGGGCCCTGgCCAGAG...GCTCATCCCGCAGCTGAAGGAGAGTCTACAG___ACCTTGATGAAGGTTGCGGCCCAAAACTTGATTCAGAACACTAACATCGACAATGGACA___AAAGAGCAGTGATGGACCCATACAGCGCTTTGACAAGTGCCTGGAAGAGTTCTATGCACTCTGTGACCAGCTGGAGCTGTGCCTG|GTCGCTCTAGGCCGAGAATGGTATATACATACGATCTATACAGTGAGATCGAAAGACAATGCCAATCGAGGTATTGGCAAAAGAAGTGTGGAGTACCATTCTCTGGTGAGTCAAGGAAAGCCCCAATCCACCACCAAGAGCCGGAAGAAGAGAGAGATCAGGAGCACACCCTCACTGGCATGGGAGATTGGTGCTGAAAACAGTCGAGGAACAAACATCCAGCACATTGCCCTGGACCGCAC...CCAGCTCTGCAGTCAGCCTGGTCACTGTGGTGGGAGGCACCACGGTAGGGTTACTCACCATCTGCCTCACTGTCATTGCAGTGCTGATGTGCAGGGGCAAGGAAAGTTTCAGGGGGAAGGATGCCCCGAAAGGCTCCAGCAGCAGTGAGCCCATGGTGCCCCCcCAGAGCCAT...AACCTTTTCCGTAAGTGCCTCGGAAAAGATCACAATGGAACCTTAAATACTTCTGGTAAACCATAGAGAATGGAGGATGGCTGTGATGAAGCTGCTTAGAG LIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYALCDQLELCL|VALGREWYIHTIYTVRSKDNANRGIGKRSVEYHSLVSQGKPQSTTKSRKKREIRSTPSLAWEIGAENSRGTNIQHIALDR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20057 TMC6::TK1 ENSG00000141524.19::ENSG00000167900.12 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1880 TRUE 3453 TRUE 1312 TMC6 ENSG00000141524.19 protein_coding - - chr17:78107397-78132407:- chr17:78128612:- chr17:76103478-76128488:- chr17:76124693:- TK1 ENSG00000167900.12 protein_coding - - chr17:78174091-78187233:- chr17:78175618:- chr17:76170172-76183314:- chr17:76171699:- chr17:78128212,chr17:78128214 chr17:78178478,chr17:78178480 NA NA chr17:76124293,chr17:76124295 chr17:76174559,chr17:76174561 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Thymidine_kinase(52%) |TK(6%) 0 15 5 259 505 ENST00000589553.5 ENST00000301634.12 upstream downstream duplicates(4),mismatches(2) GGCAGACCTGCGACTGGCCCAGTCGCCCCTGGGGCCCTTTGCCACTCCCTTGGCAAGGAGAGCCGAGACCTCAGTTCCCGGCGGCTCTTGCGGGGCACAGGTGAGCCCTGGCTGCGCGCGCGGCCCCTCCTCCCCGGCGCCTCCCAG|TTCCCTGACATCGTGGAGTTCTGCGAGGCCATGGCCAACGCCGGGAAGACCGTAATTGTGGCTGCACTGGATGGGACCTTCCAGAGGAAG___CCATTTGGGGCCATCCTGAACCTGGTGCCGCTGGCCGAGAGCGTGGTGAAGCTGACGGCGGTGTGCATGGAGTGCTTCCGGGAAGCCGCCTATACCAAGAGGCTCGGCACAGAGAAGGAG___GTCGAGGTGATTGGGGGAGCAGACAAGTACCACTCCGTGTGTCGGCTCTGCTACTTCAAGAAGGCCTCAGGCCAGCCTGCCGGGCCGGACAACAAAGAGAACTGCCCAGTGCCAGGAAAGCCAGGGGAAGCCGTGGCTGCCAGGAAGCTCTTTGCCCCACAGCAGATTCTGCAATGCAGCCCTGCCAACTGAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 76124693 TRUE 76171699 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20058 TMC6::TK1 ENSG00000141524.19::ENSG00000167900.12 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3453 TRUE 1312 TMC6 ENSG00000141524.19 protein_coding - - chr17:78107397-78132407:- chr17:78128659:- chr17:76103478-76128488:- chr17:76124740:- TK1 ENSG00000167900.12 protein_coding - - chr17:78174091-78187233:- chr17:78175618:- chr17:76170172-76183314:- chr17:76171699:- chr17:78128212,chr17:78128214 chr17:78178478,chr17:78178480 NA NA chr17:76124293,chr17:76124295 chr17:76174559,chr17:76174561 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Thymidine_kinase(52%) |TK(6%) 0 2 1 132 505 ENST00000698550.1 ENST00000301634.12 upstream downstream duplicates(4),mismatches(1) CCCGGCCCCGGCAGACCTGCGACTGGCCCAGTCGCCCCTGGGGCCCTTTGCCACTCCCTTGGCAAGGAGAGCCGAGACCTCAGTTCCCGGCGGCTCTTGCGGGGCACAG|TTCCCTGACATCGTGGAGTTCTGCGAGGCCATGGCCAACGCCGGGAAGACCGTAATTGTGGCTGCACTGGATGGGACCTTCCAGAGGAAG___CCATTTGGGGCCATCCTGAACCTGGTGCCGCTGGCCGAGAGCGTGGTGAAGCTGACGGCGGTGTGCATGGAGTGCTTCCGGGAAGCCGCCTATACCAAGAGGCTCGGCACAGAGAAGGAG___GTCGAGGTGATTGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 76124693 FALSE 76171699 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20059 RBL1::TMPRSS15 ENSG00000080839.12::ENSG00000154646.9 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3454 TRUE 1313 RBL1 ENSG00000080839.12 protein_coding - - chr20:36996349-37095997:- chr20:37040153:- chr20:35624752-35724400:- chr20:35668556:- TMPRSS15 ENSG00000154646.9 protein_coding - - chr21:18269116-18485879:- chr21:18412405:- chr21:19641433-19858197:- chr21:19784722:- chr20:37037348 chr21:18415320 NA NA chr20:35665751 chr21:19787637 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(100%)|CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),MAM_domain__meprin/A5/mu(100%),SEA_domain(100%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%) DUF3452(100%),RB_A(100%)|CUB(100%),DUF1986(100%),Ldl_recept_a(100%),MAM(100%),SEA(100%),SRCR(100%),SRCR_2(100%),Trypsin(100%) 2 5 12 115 15 ENST00000373664.8 ENST00000284885.8 upstream downstream duplicates(5),mismatches(1) CCAGGTTTCTGCAAACAAAGTTCCTACCTGTGAAGAA___GTTATATTCCCAAATAACTTTGAAACAGGAAATGGAGGAAATGTGCAGGGACATCTTCCCCTGATGCCAATGTCTCCTCTAATGCACCCAAGAGTCAAGGAAGTTCGAACTGACAGTGGGAGTCTTCGAAGAG|AAAAGAAAACAGAACAAGCTTCCTGGAATTGTGTTAAGACAGAACTTAGCAAGCGGATGTGGAAAACTGATTCTGTGGACAAAGTAAATGT...GTCCCAAGCAGACTTATGTTCCAGAT?CCTA?GAT?GTAACTGGCTTGATCACACCCAGTCTTCACTGGCTTTATC?CCCTCCATCTCTT...___TTCTTAAATTAGCAAGCCTTCAAAACCAAAAATGGGGTCGAAAAGAGGCATATCTTCTAGGCATCATTCTCTCAGCTCCTATGAAATC QVSANKVPTCEEVIFPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRR|ekkteqaswncvktelskrmwktdsvdkvn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20060 RBL1::TMPRSS15 ENSG00000080839.12::ENSG00000154646.9 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3454 TRUE 1313 RBL1 ENSG00000080839.12 protein_coding - - chr20:36996349-37095997:- chr20:37040153:- chr20:35624752-35724400:- chr20:35668556:- TMPRSS15 ENSG00000154646.9 protein_coding - - chr21:18269116-18485879:- chr21:18398329:- chr21:19641433-19858197:- chr21:19770646:- chr20:37037348 chr21:18415320 NA NA chr20:35665751 chr21:19787637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(100%)|CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),MAM_domain__meprin/A5/mu(100%),SEA_domain(100%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%) DUF3452(100%),RB_A(100%)|CUB(100%),DUF1986(100%),Ldl_recept_a(100%),MAM(100%),SEA(100%),SRCR(100%),SRCR_2(100%),Trypsin(100%) 3 1 3 115 26 ENST00000373664.8 ENST00000284885.8 upstream downstream duplicates(1) CTCAGAAGAGGGGCTCTCAAGGGACATGGTGAAACACCTAAACAGCATTGAAGAACAGATTTTGGAGAGTTTAGCATGGAGTCACGATTCTGCACTGTGGG...TTCCCAAATAACTTTGAAACAGGAAATGGAGGAAATGTGCAGGGACATCTTCCCCTGATGCCAATGTCTCCTCTAATGCACCCAAGAGTCAAGGAAGTTCGAACTGACAGTGGGAGTCTTCGAAGAG|GTGCAGCACTTGGACAGAGTCATGAAGCCAGAGCGACATTTAAAATAACATCCGGAGTTACATATAATCCTAATTTGCAAGACAAACTCTCAGTGGATTTCAAAGTTCTTGCTTTTGACCTTCAGCAAATG___ATAGATGAGATCTTTCTATCAAGCAATCTGAAGAATGAATATAAGAACTCAAGAGTTT FPNNFETGNGGNVQGHLPLMPMSPLMHPRVKEVRTDSGSLRR|gAALGQSHEARATFKITSGVTYNPNLQDKLSVDFKVLAFDLQQMIDEIFLSSNLKNEYKNSRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20062 STXBP5::PLAGL1 ENSG00000164506.16::ENSG00000118495.21 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147278204:+ chr6:147525316-147712146:+ chr6:147599340:+ PLAGL1 ENSG00000118495.21 protein_coding - + chr6:143940300-144064599:- chr6:143962943:+ chr6:144261437-144385736:- chr6:144284080:+ chr6:147280511,chr6:147280512 chr6:143945240,chr6:143945238 NA NA chr6:147601647,chr6:147601648 chr6:144266377,chr6:144266375 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none LLGL2(3%),WD_domain__G-beta_repeat(100%)| LLGL(0%),WD40(100%)| 6 5 5 32 10 ENST00000706850.1 unknown downstream upstream none CTTTTGATTGGCTTTGAATCTGGAACAGTAGTTTTATGGGACCTCAAATCAAAGAAAGCCGACTACAGATACACATATGATGAG___GCTATCCACTCTGTTGCTTGGCATCATGAAGGAAAACAATTTATTTGCAGTCATTCAGATGGCACCTTGACTATATGGAATGTAAGGTCCCCTGCTAAACCAGTACAGACAATCACTCCACATG|ATGGAAAGGAGCCCACCTGATTTGGTAGATTACAGACAACTAAATCTTATTTCAGCAAGATGGATCATGGTGAACAATGAGATTATTTCTTTGAAATGAAGCCTGAGTGGGATATTCAGATTCACCTCCAGGCAATGATGTCATTTTAAAG___CTGAAGACAGAAGCATTCTGAAGAAGTCTGTCTTTGTTAACAATATCTAAACCCAGAGAAGAAATTCTGCTGGACTTCTGGGAGGCG LLIGFESGTVVLWDLKSKKADYRYTYDEAIHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPH|dgkept* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20063 PRDM15::CRYZL1 ENSG00000141956.14::ENSG00000205758.12 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1881 FALSE NA FALSE NA PRDM15 ENSG00000141956.14 protein_coding - - chr21:41798225-41879482:- chr21:41821903:- chr21:43218385-43299591:- chr21:43242259:- CRYZL1 ENSG00000205758.12 protein_coding - - chr21:33589341-33643926:- chr21:33631557:- chr21:34961647-35016232:- chr21:35003863:- chr21:41821466,chr21:41821466,chr21:41821469 chr21:33642277,chr21:33642273,chr21:33642277 NA NA chr21:43241822,chr21:43241822,chr21:43241825 chr21:35014583,chr21:35014579,chr21:35014583 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Zinc_finger__C2H2_type(40%)| zf-C2H2(54%),zf-C2H2_4(100%),zf-C2HC_2(66%),zf-met(100%)|ADH_N(100%) 3 8 5 37 123 ENST00000422911.6 ENST00000361534.6 upstream downstream duplicates(2),mismatches(2) CCATGTCCACTTCAAG___GACATCGCGTTGATGGATGACCACCAGAGGGAAGAGTTTATCGGCAAGATCGGGATCTCCTCGGAAGAAAACGATGACAATTCTGACGAGAGCGCAGACTCGGAGCCTCACAAGTACAGCTGCAAGCGGTGCCAG|GTGACTATGAAAGGCTTATATTTCCAACAGAGTTCCACAGATGAAGAAATAACATTTGTATTTCAAGAAAAG___GAAGATCTTCCTGTTACAGAGGATAACTTTGTGAAACTTCAAGTTAAAGCTTGTGCTCTGAGCCAGATAAATACAAAG___CTTCTGGCAGAAATGAAGATGAAAAAGGATTTATTTCCTGTTGGGAGAGAAATTGCTGGAATTGTATTAGATG___TTGGAAGCAAGGTATCATTCTTTCAACCAGATGATGAAGTAGTTG___GAATTTTGCCCCTGGACTCTGAAGACCCTGGACTTTGTGAAGTTGTTAGAGTACATGAGC HVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQ|VTMKGLYFQQSSTDEEITFVFQEKEDLPVTEDNFVKLQVKACALSQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVVRVHE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20071 ENSG00000237312::ARID1B ENSG00000237312.2::ENSG00000049618.25 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000237312 ENSG00000237312.2 lncRNA - + chr6:153304595-153427154:- chr6:153357936:+ chr6:153625730-153748289:- chr6:153679071:+ ARID1B ENSG00000049618.25 protein_coding + + chr6:156776020-157210779:+ chr6:157110473:+ chr6:157097154-157531913:+ chr6:157431607:+ chr6:153358050,chr6:153358048 chr6:157108810,chr6:157108805 NA NA chr6:153679185,chr6:153679183 chr6:157429944,chr6:157429939 NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' high none |ARID/BRIGHT_DNA_binding_domain(100%),SWI/SNF-like_complex_subunit_BAF250/Osa_(100%) |ARID(100%),BAF250_C(100%) 2 1 3 2 66 unknown ENST00000346085.10 downstream upstream duplicates(1) CGTTTCTCCACTGTCAGCAAGAAGCA___TGAAACCCTGCTTTTCAAGCTCTTCACACCGCCTGTGAGCCTAAACTTTCATGGCCGTGGGACAAGGAGCCCATCTTTAGCTAAGCTCAGGAAGAGTCCTGCAACATTAAGACGTGGAAGTGGTCCTGTGAAAGCAAAAGTGGACCAGTCAAGAGCAAAGATCGAGG|TAGTCAGATGCCTCCGCAGCCACCCGGGAGCCAGTCAGAATCCAGTTCCCATCCCGCCTTGAGCCAGTCACCAATGCCACAGGAAAGAG___GTTTTATGGCAGGCACACAAAGAAACCCTCAGATGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1B 1 Yes breast, hepatocellular carcinoma, clear cell ovarian carcinoma epithelial TSG missense, frameshift, nonsense, other 20072 PRKD2::NRP2 ENSG00000105287.13::ENSG00000118257.17 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKD2 ENSG00000105287.13 protein_coding - - chr19:46674275-46717127:- chr19:46689537:- chr19:47177532-47220384:- chr19:47192794:- NRP2 ENSG00000118257.17 protein_coding + - chr2:205681990-205798133:+ chr2:205708784:- chr2:206546714-206662857:+ chr2:206573508:- chr19:46689370,chr19:46689373 chr2:205710872,chr2:205710872 NA NA chr19:47192627,chr19:47192630 chr2:206575596,chr2:206575596 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(39%)| C1_1(100%),Kdo(9%),PK_Tyr_Ser-Thr(13%),Pkinase(13%)| 4 1 1 217 4 ENST00000433867.5 unknown upstream downstream none GGCCGCCCGGGGCTGGGAGACAGCCATCCGCCAGGCCCTGATGCCCGTCATCCTTCAGGACGCACCCAGCGCCCCAGGCCACGCGCCCCACA___GACAAGCTT...GTCATTGACAAACTGCGCTTCCCTACCAAGCAGGAGAGCCAGCTCCGGAATGAAGTGGCCATTCTGCAG___AGCCTGCGGCATCCCGGGATCGTGAACCTGGAGTGCATGTTCGAGACGCCTGAGAAAGTGTTTGTGGTGATGGAGAAGCTGCATGGGGACATGTTGGAGATGATCCTGTCCAGTGAGAAGGGCCGGCTGCCTGAGCGCCTCACCAAGTTCCTCATCACCCAG|GGTCACCATGGCTCTTCAGAAAGGAGGAAGTCTGACCACCCACCAAAGGAAGTACACGGAGAGAATAACCCAAAACAAACTGAAGGAATTATTCCAAAAAACCTTGAAGGCgAagAAA...AAAGGCCCTGCGATGATGGTGgGGcCCCCGCCAATCTCATTGTTCCTCATGGAGCAGGCTGCCAAGAATGCCTCCTGACGTGAGGAAGGAGGCCACTCCAG VIDKLRFPTKQESQLRNEVAILQSLRHPGIVNLECMFETPEKVFVVMEKLHGDMLEMILSSEKGRLPERLTKFLITQ|ghhgsserrksdhppkevhgennpkqtegiipknlegee NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-320e chr19:46709282-46709354:- FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase D2 CAMK PKD Q9BZL6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20082 APP::ENSG00000270533 ENSG00000142192.22::ENSG00000270533.2 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APP ENSG00000142192.22 protein_coding - - chr21:25880535-26171128:- chr21:25954590:- chr21:27252846-27543446:- chr21:27326904:- ENSG00000270533 ENSG00000270533.2 transcribed_processed_pseudogene - - chr21:9975017-10119309:- chr21:9998048:- chr21:10453045-10597337:- chr21:10476076:- chr21:25947783,chr21:25947766,chr21:25947791 chr21:9999568,chr21:9999572,chr21:9999572 NA NA chr21:27320098,chr21:27320081,chr21:27320106 chr21:10477596,chr21:10477600,chr21:10477600 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Amyloid_A4_N-terminal_heparin-binding(100%),Copper-binding_of_amyloid_precursor__CuBD(100%),E2_domain_of_amyloid_precursor_protein(100%),Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain(100%)| APP_Cu_bd(100%),APP_E2(100%),APP_N(100%),Kunitz_BPTI(100%)| 0 1 14 2761 53 ENST00000359726.7 ENST00000604687.1 upstream downstream duplicates(1),mismatches(2) GACAGACAGCACACCCTAAAGCATTTCGAGCATGTGCGCATGGTGGATCCCAAGAAAGCCGCTCAGATCCGGTCCCAG___GTTATGACACACCTCCGTGTGATTTATGAGCGCATGAATCAGTCTCTCTCCCTGCTCTACAACGTGCCTGCAGTGGCCGAGGAGATTCAGGATGAAGTTG|CTACCCAAGGTGCGAAAAgGAAAGAAGGCCGAAGGGAAGAAGGTGGTGCcCACCCTTGCTGTCTTGAAAAAGCAGGAGACCATGAAAGTGGTGAATCTTCCATTTGAGAAATTTGGCACTGGACAGGACATTTTGGCATTGGACAGAACATCCAGCCCAAAAGGGACCTCACTTACTTTGTCAAATGGCCCCATTATACTAGGTTGCAGCAGCAGAGAGCCATCCTCTATAAACAGCTAGAAGTGCCTTCTGTGATTAATCAGTTCACCAGGGCCTTGGACCACCAAACAGCTGCTCAATGGGGTAAGCGGGCTGGCAAGTACAGACCAG DRQHTLKHFEHVRMVDPKKAAQIRSQVMTHLRVIYERMNQSLSLLYNVPAVAEEIQDEV|atqgakrkegrreeggahpcclekagdhesgessi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20086 MAP7::IGF2R ENSG00000135525.19::ENSG00000197081.16 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1883 FALSE NA FALSE NA MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136550342:- chr6:136663419-136871957:- chr6:136871480:- IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:159991184:+ chr6:160390114-160534539:+ chr6:160412216:+ chr6:136467959,chr6:136467965 chr6:159975876,chr6:159975870 NA NA chr6:136789097,chr6:136789103 chr6:160396908,chr6:160396902 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Cation-independent_mannose-6-phosphate_receptor_repeat(100%),Fibronectin_type_II_domain(100%) |ATG27(100%),CIMR(100%),Man-6-P_recep(100%),fn2(100%) 0 10 0 119 78 ENST00000616617.4 ENST00000676781.1 upstream upstream duplicates(1),mismatches(1) TCGGAGCACCATGGCGGAGCTAGGAGCTGGCGGCGACGGCCACAGGGGCGGCGACGGCGCAGTGCGAAGCGAAACAG|TTATACATGGGAAGCTGTTGATACCAAAAATAATGTACTTTATAAAATCAACATCTGTGGAAGTGTGGATATTGTCCAGTGCGGGCCATCAAGTGCTGTTTGTATGCACGACTTGAAGACACGCACTTATCATTCAGTGG___GTGACTCTGTTTTGAGAAGTGCAACCAGATCTCTCCTGGAATTCAACACAACAGTGAGCTGTGACCAGCAAGGCACAAATCACAGAGTCCAGAGCAGCATTGCCTTCCTGTGTGGGAAAACCCTGG MAELGAGGDGHRGGDGAVRSET|vihgkllipkimyfikstsvevwilssaghqvlfvctt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20090 ENSG00000249141::PRKN ENSG00000249141.1::ENSG00000185345.25 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000249141 ENSG00000249141.1 protein_coding - - chr6:166858094-166956124:- chr6:166938895:- chr6:167271582-167369612:- chr6:167352383:- PRKN ENSG00000185345.25 protein_coding - + chr6:161347417-162727775:- chr6:162439701:+ chr6:161768449-163148807:- chr6:162860733:+ chr6:166877989,chr6:166877991 chr6:162436131,chr6:162436129 NA NA chr6:167291477,chr6:167291479 chr6:162857163,chr6:162857161 NA NA sense antisense unknown CDS/splice-site intron inversion/5'-5' medium none none Ribonuclease_T2(65%)| 0 2 2 1888 5 ENST00000507747.1 unknown upstream upstream duplicates(2) TTTTGCCAGAAATGAGGGCATACTGGCCTGACGTAATTCACTCGTTTCCCAATCGCAGCCGCTTCTG___GAAGCATGAGTGGGAAAAGCATGGGACCTGCGCCGCCCAGGTGGATGCGCTCAACTCCCAGAAGAAGTACTTTGGCAGAAGCCTGGAACTCTACAGGGAGCTGGACCTCAACAG|CCTACTCAACATGAAGACAAAGACAATGAAAATCTTGATGATCCACTTCTACTTAATGAATA___...TTGTTCTTCCAATCTTTCCTGCTTGCTGTTTTAATGCATAATTAAGAAGGTCAGAATTAATGAAGCAGTGTGGAGTAAAGTTCAAG...___ATCTCAGGCATGAATGTCAGATTGGCAGCGCAGGCGGCATGAGCAATGGAGCTGGCGGCATCCCAAGAACGGCCGCCAAGGGAGACTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20092 FOXO1::CA8 ENSG00000150907.10::ENSG00000178538.10 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3456 TRUE 1314 FOXO1 ENSG00000150907.10 protein_coding - - chr13:40555667-40666641:- chr13:40633147:- chr13:41129804-41240778:- chr13:41207284:- CA8 ENSG00000178538.10 protein_coding - - chr8:60185412-60281400:- chr8:60208919:- chr8:61097971-61193959:- chr8:61121478:- chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713 chr8:60218491,chr8:60218497,chr8:60218516,chr8:60218521,chr8:60218537 NA NA chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850 chr8:61131050,chr8:61131056,chr8:61131075,chr8:61131080,chr8:61131096 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none Forkhead_domain(59%)|Eukaryotic-type_carbonic_anhydrase(15%) Forkhead(31%)|Carb_anhydrase(0%) 1 0 0 9 2 ENST00000660760.1 ENST00000317995.5 upstream downstream none CAAGAGCGTGCCCTACTTCAAGGATAAGGGTGACAGCAACAGCTCGGCGGGCTGGtAG___GgGGTGATGATACACTTCACCCTGGGCGTGAACATGATGaAAG...GGAACTGTCAAACTGCTGAAAAGTGGCTGCACCATTTTACATTCCTACCATGAAAG|ATAGAAGAATTTCGAAGGCTGAGGACACATGTTAAGGGGGCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box O1 1 alveolar rhabdomyosarcoma mesenchymal oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20093 FOXO1::CA8 ENSG00000150907.10::ENSG00000178538.10 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3456 TRUE 1314 FOXO1 ENSG00000150907.10 protein_coding - - chr13:40555667-40666641:- chr13:40665583:- chr13:41129804-41240778:- chr13:41239720:- CA8 ENSG00000178538.10 protein_coding - - chr8:60185412-60281400:- chr8:60189985:- chr8:61097971-61193959:- chr8:61102544:- chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713 chr8:60218491,chr8:60218497,chr8:60218516,chr8:60218521,chr8:60218537 NA NA chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850 chr8:61131050,chr8:61131056,chr8:61131075,chr8:61131080,chr8:61131096 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation low none Forkhead_domain(59%)| Forkhead(0%)| 0 1 0 24 5 ENST00000379561.6 ENST00000317995.5 upstream downstream duplicates(1) CAAGGATAAGGGTGACAGCAACAGCTCGGCGGGCTGGAAG|GAGGAAGACAATGGTCCTATAATGCCCTTGGATAAGAAAAGGAAACTTTTGAGCTGCACCT...TATTGCTTATGTGTAGAAGGAATGAAACTAGTTTCCAGAGTTGTTATTAATATGAATATATATCATGTGTTAATATTGAGAAAGGAAAAATACATTCCCG KDKGDSNSSAGWK|eedngpimpldkkrkllsct NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box O1 1 alveolar rhabdomyosarcoma mesenchymal oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20094 FOXO1::CA8 ENSG00000150907.10::ENSG00000178538.10 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3456 TRUE 1314 FOXO1 ENSG00000150907.10 protein_coding - - chr13:40555667-40666641:- chr13:40665583:- chr13:41129804-41240778:- chr13:41239720:- CA8 ENSG00000178538.10 protein_coding - - chr8:60185412-60281400:- chr8:60208919:- chr8:61097971-61193959:- chr8:61121478:- chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713,chr13:40631713 chr8:60218491,chr8:60218497,chr8:60218516,chr8:60218521,chr8:60218537 NA NA chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850,chr13:41205850 chr8:61131050,chr8:61131056,chr8:61131075,chr8:61131080,chr8:61131096 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Forkhead_domain(59%)|Eukaryotic-type_carbonic_anhydrase(15%) Forkhead(0%)|Carb_anhydrase(0%) 0 1 0 24 2 ENST00000379561.6 ENST00000317995.5 upstream downstream none CCTACTTCAAGGATAAGGGTGACAGCAACAGCTCGGCGGGCTGGAAG|ATAGAAGAATTTCGAAGGCTGAGGACACATGTTAAGGGGGCAGAACTTGTGGAA...TGCATTTCAGTAGCCAAAGAGGACAGGAACAAGTCTGTCTTCATGAGG___GAGGAAGACAATGGTCCTATAATGCCCTTGGATAAGAAAAGGAAACTTTTGAG YFKDKGDSNSSAGWK|IEEFRRLRTHVKGAELV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box O1 1 alveolar rhabdomyosarcoma mesenchymal oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20096 NUDCD1::TBC1D31 ENSG00000120526.12::ENSG00000156787.17 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUDCD1 ENSG00000120526.12 protein_coding - - chr8:109240919-109334121:- chr8:109245322:- chr8:110253148-110346350:- chr8:110257551:- TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123093591:+ chr8:124054208-124164393:+ chr8:124105831:+ chr8:109242604 chr8:123089519 NA NA chr8:110254833 chr8:124101759 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none CS_domain(100%)|Rab-GTPase-TBC_domain(100%) CS(100%)|RabGAP-TBC(100%) 1 0 1 250 41 ENST00000239690.9 ENST00000287380.6 upstream upstream none TTTTCTCTGTCATAGTGGATCCTAAAGAAATGCCCTGCTTCTGTTTGCGCCATGATGTTGATGCCCTACTCTGGCAACCACACTCCAGCAAACAAGATGATATGTGGGAGCACATCGCAACTTTCAATGCTTTAG|GTTTTCTTTCTACCATTAAGTAATACCATCCTCAGCTGTTTTAAAGATAATTCCATTTTTGCCTGGGAATGTGACACACTTTTTTGCAAATATCAATTGCCAGCTCCACCTGAAAGCTCTAG FSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNAL|gflstik* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20097 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63622815:- chr15:63900817-64126147:- chr15:63915014:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:63939361:- chr15:64199235-64364232:- chr15:64231560:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none HECT-domain_(ubiquitin-transferase)(0%),Regulator_of_chromosome_condensation_(RCC1)_repeat(100%),SPRY_domain(100%),WD_domain__G-beta_repeat(100%)|Protein_kinase_domain(50%) HECT(0%),RCC1(100%),RCC1_2(100%),SPRY(100%),WD40(100%)|Kdo(0%),PK_Tyr_Ser-Thr(12%),Pkinase(12%),RIO1(0%) 1 1 0 89 3 ENST00000443617.7 ENST00000457488.6 upstream downstream none CTCTGCCAATGGTGCGCTCCATAGGAAAAACCATGGTTCAAGGCAAAAACTATGGACCTCAGATAACTGTAAAGAGGATATCAACCAG___AGGACGGAAGTG...GTGCCAG___GAACTTGAAACTGGTATTGTTGACCTTCTTATACCCTCTCCCAATGCCACCGCAGAAGTGGGTTACAATAGGGACAG|CCAGAAAACATTATGTTGTTAGACAAGAATATTCCCATTCCACACATCAAGCTGATTGACTTTGGTCTGGCTCACGAAATAGAAGATGGAGTTGAATTTAAGAATATTTTTGGGACGCCGGAATTTGTTG___CTCCAGAAATTGTGAACTACGAG CQELETGIVDLLIPSPNATAEVGYNRDs|qktlcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,TRUE,FALSE,FALSE,FALSE|TRUE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20113 CNGA1::ENSG00000286133 ENSG00000198515.16::ENSG00000286133.2 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNGA1 ENSG00000198515.16 protein_coding - - chr4:47935977-48016681:- chr4:48016483:- chr4:47937994-48018698:- chr4:48018500:- ENSG00000286133 ENSG00000286133.2 lncRNA - - chr4:157568731-157824256:- chr4:157677333:- chr4:158489883-158745408:- chr4:158598485:- chr4:48012459 chr4:157688355 NA NA chr4:48014476 chr4:158609507 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 1 1 0 19 18 ENST00000514170.7 ENST00000652341.2 upstream downstream none AACTGGTGTATCTGGCAGGAGTAGCAGCTGCCCCTTGGCGCGACTGCTGGAGCCGCGAACTAGAGAAACACAGACACGCCTCATAGAGCAACgGCGTCTCTCGGAGCGTGGAGCCCGCCAAG|CCATGTGAAGTGCCTCACTCCCTGTTCACCTTCCACCATGATTTTAAGTTCTGTGAGGCCTCCCTAGAAGCTGATGCCACCATGTTTCCTGTACAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20120 GALE::ELOA-AS1 ENSG00000117308.15::ENSG00000236810.8 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GALE ENSG00000117308.15 protein_coding - - chr1:23795599-23800781:- chr1:23797695:- chr1:24122089-24127271:- chr1:24124185:- ELOA-AS1 ENSG00000236810.8 lncRNA - - chr1:23706901-23778325:- chr1:23761151:- chr1:24033391-24104815:- chr1:24087641:- chr1:23797145,chr1:23797150 chr1:23761912,chr1:23761914 NA NA chr1:24123635,chr1:24123640 chr1:24088402,chr1:24088404 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none GDP-mannose_4_6_dehydratase(52%)| 3Beta_HSD(100%),Epimerase(53%),GDP_Man_Dehyd(43%),KR(100%),NAD_binding_4(61%),Polysacc_synt_2(100%),RmlD_sub_bind(100%)| 69 112 48 1281 495 ENST00000617979.5 ENST00000427796.6 upstream downstream duplicates(20),low_entropy(19),mismatches(17) CGGGACCATCCAGCTTCTGGAG___ATCATGAAGGCCCACGGGGTGAAGAACCTGGTGTTCAGCAGCTCAGCCACTGTGTACGGGAACCCCCAGTACCTGCCCCTTGATGAGGCCCACCCCACGGGTGGTTGTACCAACCCTTACGGCAAGTCCAAGTTCTTCATCGAGGAAATGATCCGGGACCTGTGCCAGGCAGACAAG|GCACCCTGCACAGCAATACACACTGAACAATGTCGAGTTTCTGCTGAATAGACTTCCTACGTTGCTCTGGAATTCGAAGTTGGCCTAACTGAGGTCTCCAGTTACAGAAAACACTGGCTCTGTATCCTGGGCTTTGAGAAAACTTATCAGGCTGTCACACTTACCATCCCTTCAGTCTGCTTGTCAGGTTCCTTAAGGACGCATATCTCAAATGTATGGCATCTACCTCTACCTGGG GTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK|apctaihteqcrvsae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20121 WIPF2::FMNL1-DT ENSG00000171475.14::ENSG00000267121.7 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ FMNL1-DT ENSG00000267121.7 lncRNA - + chr17:45190931-45222274:- chr17:45212409:+ chr17:43268298-43299641:- chr17:43289776:+ chr17:40235564,chr17:40235587,chr17:40235628,chr17:40235591,chr17:40235622,chr17:40235618,chr17:40235617 chr17:45204741,chr17:45204741,chr17:45204689,chr17:45204878,chr17:45204669,chr17:45204669,chr17:45204669 NA NA chr17:38391816,chr17:38391839,chr17:38391880,chr17:38391843,chr17:38391874,chr17:38391870,chr17:38391869 chr17:43282108,chr17:43282108,chr17:43282056,chr17:43282245,chr17:43282036,chr17:43282036,chr17:43282036 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 31 131 29 275 300 ENST00000323571.9 unknown downstream upstream duplicates(12),inconsistently_clipped(1),low_entropy(2),mismatches(10) GCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|AGAAGAAAACAGAGGCTCAGGGAGTTTATGACTGCATTCAGATCCTAGTTCTGACATTTACCAGCAATATGACATTGAATAAGTCAGTCACTCCAGAGGACACCGAGCTCAGTGAGCACATTGGCGAGGCCTGCCCTGCCGGGATGCTGTTTGCCTTACAGTAACACGTAGAATGCCTCAGTGTCTGGCACAGCACTGGTACTCAGAAGACGTCAGTGATGACTGCTGTCTAAAGGGAAGGGATATGTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20125 CDH1::CDH3 ENSG00000039068.20::ENSG00000062038.15 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68812263:+ chr16:68771195-68869440:+ chr16:68846166:+ CDH3 ENSG00000062038.15 protein_coding + + chr16:68636189-68727468:+ chr16:68698191:+ chr16:68670092-68761371:+ chr16:68732094:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Cadherin_domain(41%),Cadherin_prodomain_like(100%)|Cadherin__Y-type_LIR-motif(44%) Cadherin(34%),Cadherin_pro(100%)|Cadherin_C(6%) 24 26 21 223 127 ENST00000261769.10 ENST00000264012.9 downstream upstream duplicates(3),mismatches(5) AGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTGGACCGAGAG___AGTTTCCCTACGTATACCCTGGTGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGCAACAGCTGTGATCACAGTCACTGACACCAACGATAATCCTCCGATCTTCAATCCCACCACG|AACCTGAAGGCGGCTAACACAGACCCCACAGCCCCGCCCTACGACACCCTCTTGGTGTTCGACTATGAGGGCAGCGGCTCCGACGCCGCGTCCCTGAGCTCCCTCACCTCCTCCGCCTCCGACCAAGACCAAGATTACGATTATCTGAACGAGTGGGGCAGCCGCTTCAAGAAGCTGGCAGACATGTACGGTGGCGGGGAGGACGACTAGGCGGCCTGCCTGCAGGGCTGGGGACCAAACGTCAGGCCACAGAGCATCTCCAAGGGGTCTCAGTTCCCCCTTCAGCTGAG RNTGVISVVTTGLDRESFPTYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNPTT|NLKAANTDPTAPPYDTLLVFDYEGSGSDAASLSSLTSSASDQDQDYDYLNEWGSRFKKLADMYGGGEDD* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 20126 CPEB2::CC2D2A ENSG00000137449.17::ENSG00000048342.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1886 FALSE NA FALSE NA CPEB2 ENSG00000137449.17 protein_coding + + chr4:15002481-15070153:+ chr4:15017278:+ chr4:15004105-15071777:+ chr4:15018902:+ CC2D2A ENSG00000048342.18 protein_coding + + chr4:15469865-15601552:+ chr4:15553158:+ chr4:15471489-15603175:+ chr4:15554781:+ chr4:15025809,chr4:15025838,chr4:15025837 chr4:15552467,chr4:15552467,chr4:15552463 NA NA chr4:15027433,chr4:15027462,chr4:15027461 chr4:15554090,chr4:15554090,chr4:15554086 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |C2_domain(100%),CC2D2A_N-terminal_C2_domain(22%) |C2(100%),CC2D2AN-C2(0%) 22 10 21 101 63 ENST00000382395.8 ENST00000503292.6 downstream upstream duplicates(2),mismatches(3) CCAGGAACTATGAATCAGATATCTCCATTGAAGAAACCGTTTTCTGGTAATGTCATAGCACCACCGAAATTTACTCGCTCAACTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGAACAGACAACAATAGTAATACACTCTTACCCTTACAG___GATCGAAGTAGAATGTATGACAGTTTGAATATGCACTCTTTGGAAAATTCCCTTATCGATATTATGAGAGCAGAGCATGATCCTCTTAAGG|GAGTGCCCTTCTCATTTGAAGCTGATGGCAGTAACCAGCTGACTCTGATGACCTCAGGGAAAGTGTCTCATAGTGTGGCATGGGCCATTGGAGAAAACGGGATACCTTTAATTCCTCCATTGTCACAGCAGAACATCGGATTTCGGAG___TGCTTTGAAGAAAGCAGATGCCATCTCATCTATTGGCACATCAGGACTGACAGACATGAAAAAATTGG PGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSLNMHSLENSLIDIMRAEHDPLK|gVPFSFEADGSNQLTLMTSGKVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSIGTSGLTDMKKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20127 AGAP3::TTC26 ENSG00000133612.20::ENSG00000105948.13 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1887 FALSE NA FALSE NA AGAP3 ENSG00000133612.20 protein_coding + + chr7:151085831-151144436:+ chr7:151123886:+ chr7:150782918-150841523:+ chr7:150820973:+ TTC26 ENSG00000105948.13 protein_coding + + chr7:139133744-139191986:+ chr7:139165132:+ chr7:138818490-138876732:+ chr7:138849878:+ chr7:151127085,chr7:151127084 chr7:139162342,chr7:139162338 NA NA chr7:150824172,chr7:150824171 chr7:138847088,chr7:138847084 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PH_domain(2%),Ras_family(100%)| PH(0%),Ras(100%)| 19 12 13 101 65 ENST00000463381.5 ENST00000430935.5 downstream upstream none ATCGAGACCATCGCTGCCTCCTCCACCCCCACACCCATCCGAAAGCAGTCCAAGCGGCGCTCCAACATCTTCACG___TCTCGGAAGGGTGCTGACCTGGACCGGGAGAAGAAGGCTGCCGAGTGCAAGGTGGACAGCATCGGGAGCGGCCGCGCCATCCCCATCAAGCAG|GTTGTTTTCCGAGGAGGTGAAGGGGCTTTGCAGGTTTTACCTCCCCTAGTTGATGTCATTCCTGAAGCTAGGCTAAACTTGGTGATTTACTACCTTCGTCAAG___ATGATGTACAAGAAGCTTATAACTTAATTAAGGATCTGGAACCTACTACTCCTCAG___GAGTATATTCTCAAAGGAGTGGTCAATGCA IETIAASSTPTPIRKQSKRRSNIFTSRKGADLDREKKAAECKVDSIGSGRAIPIKQ|VVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20128 NIPBL::CPLANE1 ENSG00000164190.19::ENSG00000197603.16 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:36877178:+ chr5:36876871-37066515:+ chr5:36877280:+ CPLANE1 ENSG00000197603.16 protein_coding - + chr5:37106228-37249376:- chr5:37221351:+ chr5:37106330-37249478:- chr5:37221453:+ chr5:36952258,chr5:36952256 chr5:37203305,chr5:37203300 NA NA chr5:36952360,chr5:36952358 chr5:37203407,chr5:37203402 NA NA sense antisense unknown 5'UTR/splice-site CDS deletion/read-through/5'-5' high none none none 11 20 5 220 143 ENST00000282516.13 unknown downstream upstream duplicates(3),mismatches(7) AGGAAGAAGAAGCAACGATTTGTCTTCTCGGCTGGTCTCCCCCCGGCTCTACATGTTCCCCGCACTGAGGAGACGGAAGAGGAGCCGTAGCCACCCCCCCTCCCGGCCCGGATTATAGTCTCTCGCCACAGCGGCCTCGGCCTCCCCTTGGATTCAGACGCCGATTCGCCCAG|GTAGTTGGGACCATCTCAGGATTTCTCTTGCTAGCTGATCACACAATCCTTGAGCATCATTTAAATTATAGCTATAGAGGTGGCAGTATAAGAGAGAAAGATAATAGCGTATCTGAAGAAAATACGTCCTTCTTCCTCCTGAAACAAGAAGTAAGCTCACCTTAAAAGTATGTAAGCAAAGGAATGCCCTTGGTGTAGTGCTCAATTGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20135 TPRG1::RNF2 ENSG00000188001.10::ENSG00000121481.11 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPRG1 ENSG00000188001.10 protein_coding + - chr3:188947214-189325304:+ chr3:189023157:- chr3:188665003-189043093:+ chr3:188740946:- RNF2 ENSG00000121481.11 protein_coding + + chr1:185045526-185102603:+ chr1:185098072:+ chr1:185014658-185071735:+ chr1:185067204:+ chr3:189002378,chr3:189002388 chr1:185095920,chr1:185095909 NA NA chr3:188720167,chr3:188720177 chr1:185065052,chr1:185065041 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none |RAWUL_domain_RING_finger-_and__WD40-associated_ubiquitin-like(100%) |RAWUL(100%) 3 15 1 181 731 unknown ENST00000367510.8 upstream upstream duplicates(1),multimappers(2) CCAAGATGGCCGAATAGGAACAGCTCCGGTCTGCAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAG|ACTGCAGCGAGGCAAGAAACAACAGATTGAAAATGGTAGTGGAGCAGAAGATAATGGTGACAGTTCACACTGCAGTAATGCATCCACACATAGCAATCAGGAAGCAGGCCCTAGTAACAAACGGACCAAAACATCTGATGATTCTGGGCTAGAGCTTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20138 GTF2I::GTF2IRD1 ENSG00000263001.8::ENSG00000006704.11 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 1890 FALSE NA FALSE NA GTF2I ENSG00000263001.8 protein_coding + + chr7:74650231-74760692:+ chr7:74658068:+ chr7:74064571-74175022:+ chr7:74072394:+ GTF2IRD1 ENSG00000006704.11 protein_coding + + chr7:74453790-74602605:+ chr7:74529734:+ chr7:73868120-74016931:+ chr7:73944064:+ chr7:74662377,chr7:74662375 chr7:74524792,chr7:74524787 NA NA chr7:74076706,chr7:74076704 chr7:73939122,chr7:73939117 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none CENP-B_N-terminal_DNA-binding_domain(100%),Tc5_transposase_DNA-binding_domain(100%)|GTF2I-like_repeat(76%) CENP-B_N(100%),HTH_Tnp_Tc5(100%)|GTF2I(67%) 2 13 0 87 146 ENST00000573035.6 ENST00000265755.7 downstream upstream duplicates(1) CCGCAGCCCGCGCGCGGCCCACACTCGCCTCCCCTCGGCACCCCCGGCCCCGGAGCTGCCTGGAGGCGGCCGCACTCGG|CGGAAGCCCTGGGCCTGGACCACATGGTCCCCGTGCCCTACCGGAAGATTGCCTGTGACCCGGAGGCTGTGGAGATCGTGGGCATCCCGGACAAGATCCCCTTCAAGCGCCCCTGCACTTATGGAGTCCCCAAGCTGAAGCGGATCCTGGAGGAGCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-10525 chr7:74595968-74596026:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Liver,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE General transcription factor IIi 2 thymoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20144 CCDC7::PATJ ENSG00000216937.14::ENSG00000132849.22 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3463 FALSE NA CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32474023:+ chr10:32735068-33171802:+ chr10:32762951:+ PATJ ENSG00000132849.22 protein_coding + - chr1:61742477-62178675:+ chr1:61976353:- chr1:62208149-62644347:+ chr1:62442025:- chr10:32502826,chr10:32502826,chr10:32502825 chr1:61977264,chr1:61977263,chr1:61977265 NA NA chr10:32791754,chr10:32791754,chr10:32791753 chr1:62442936,chr1:62442935,chr1:62442937 NA NA sense antisense stop-codon CDS/splice-site intron translocation/5'-5' high none Spermatogenesis_family_BioT2(100%)| BioT2(100%)| 2 3 4 122 13 ENST00000545067.6 unknown downstream downstream mismappers(1) GGCAGGTCAATCAGATGGAAGAA___GGATAAAGAAAATCGACCAGAAGCAGTGAAAAGTTGTGAAGCTCTGGCACAGAAAATTGAAG___AATTCTTAGAAGCCCACTCAACTGATGAATTTAAAGATGTTTCTGCAACAGAACCAC|ATAATGAAGCTGAGGCCAGTGGAGGTTgTaGAACTTGCCTAAACTCAAAGTAAGTAATTGGTAAGATTTGGGTTTCAGGTTTGGGTCTGTCTCACTTCAAATCCTGTGTGTTTACCCATCAACACAAAGAAAATAAAGAAGCACGTTATGTTCACTTCTGCTAGAGTAGCAGAAGGAAAGCCTAAAACCTTCCTCAGCCCTTTTGGAATCGACAATTTAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20156 DNAH14::ENSG00000286719 ENSG00000185842.16::ENSG00000286719.1 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAH14 ENSG00000185842.16 protein_coding + + chr1:224896262-225399292:+ chr1:224929835:+ chr1:225083964-225586994:+ chr1:225117537:+ ENSG00000286719 ENSG00000286719.1 lncRNA - + chr1:224802959-224881355:- chr1:224858710:+ chr1:224990661-225069057:- chr1:225046412:+ chr1:224944335 chr1:224856981 NA NA chr1:225132037 chr1:225044683 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 7 1 457 22 ENST00000445597.6 unknown downstream upstream low_entropy(1),mismatches(1) CCAGGAGGCGTCGGAGCCTGGCGTGGTAGGGCTGTGCTGCGCGGTCCTTCCCATTCACCCTAGTCTGGCGCTCGCCGGCGTGGGCGGGCCGGACCTTCGCCGCTTCCAGGAAGGGCCACAACGGCCGTCGGACCACGGCGCGGCGG|GCAAGAGATGGGAGAAAGATAGGAAGACACTCAGAGAAATAAGGAGGAGAACCAGGAGAGTGCACATTTTAGAAGAAAAGGAGGAGAAGAGTTACAAGAAAGAGAGAGGTGAAGAGAAGGAAG___GAGAAAACTGTCCTTCTAATTGTCAAGGAACTGTAGTAGGTTGTAAACATCCC QEASEPGVVGLCCAVLPIHPSLALAGVGGPDLRRFQEGPQRPSDHGAA|gkrwekdrktlreirrrtrrvhileekeeksykkergeekegencpsncqgtvvgckh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20157 GRIP1::CRACD ENSG00000155974.14::ENSG00000109265.15 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GRIP1 ENSG00000155974.14 protein_coding - - chr12:66347431-67069162:- chr12:66596847:- chr12:66741211-67462942:- chr12:66990627:- CRACD ENSG00000109265.15 protein_coding + - chr4:56049098-56330609:+ chr4:56159115:- chr4:56915264-57196775:+ chr4:57025281:- chr12:66566857,chr12:66566859 chr4:56180416,chr4:56180416 NA NA chr12:66960637,chr12:66960639 chr4:57046582,chr4:57046582 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 3 3 41 7 ENST00000643019.1 unknown upstream downstream duplicates(1) GCCCGACAGCGAGCGCAGGGAGCGACACCATGCCCGGCTGGAAGAAGAATATCCCTATCTGCTTGCAGGCAGAGGAGCAGGAGAGAG___ATGAGAGTCCCTACACTAAATCCGCCAGCCAGACAAAGCCGCCTGATGGAGCGTTGGCTGTGAGGAGACAGAGCATCCCAG|GACTTGAGTAGTGATTCCTCCCCAGAGGGGTGAGACGTCGTCACAACACTATAAAGTAATAACTGCCATCACATAACATACAACATGCAACCACTCTGGCATGGGACAGCTGGGAAATGCTCCACAGGGAAAATGATTTGAAG MPGWKKNIPICLQAEEQERDESPYTKSASQTKPPDGALAVRRQSIP|gle* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20159 TRIM37::TMEM186 ENSG00000108395.14::ENSG00000184857.8 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3465 TRUE 1315 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59104293:- chr17:57059999-57184282:- chr17:57181654:- TMEM186 ENSG00000184857.8 protein_coding - - chr16:8780384-8797642:- chr16:8781444:- chr16:8874241-8891499:- chr16:8875301:- chr17:59103635,chr17:59103639 chr16:8792310,chr16:8792311 NA NA chr17:57180996,chr17:57181000 chr16:8886167,chr16:8886168 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Zinc_finger__C3HC4_type_(RING_finger)(60%)| zf-C3HC4_3(0%),zf-RING_2(0%)|Aminotran_3(100%) 2 1 4 566 107 ENST00000393066.7 ENST00000564869.1 upstream downstream duplicates(1),mismappers(2) CGTGGAG___AGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAGAAATTGCGGGATGCACGCCTGTGTCCTCATTGCTCCAAACTGTGTTGTTTCAGCTGTATTAGG|TGGAAATGGCTTCTTTACTTGAAGTCTGCTAAGATGTCACTGAAAATATTGAGGAACAGGTGAGCGTGGTGATCCCTGAAGACCAGCGTGGGACGGAAACGAATGGATTTGTCACCACAGCCACCCAACACCACACCTGAAAGAGGCAGGAG___AGATGGAGTCTCGCGCTGTCACCCA VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIR|wkwllylksakmslkilrnr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20160 TRIM37::TMEM186 ENSG00000108395.14::ENSG00000184857.8 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3465 TRUE 1315 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59104293:- chr17:57059999-57184282:- chr17:57181654:- TMEM186 ENSG00000184857.8 protein_coding - - chr16:8780384-8797642:- chr16:8780761:- chr16:8874241-8891499:- chr16:8874618:- chr17:59103635,chr17:59103639 chr16:8792310,chr16:8792311 NA NA chr17:57180996,chr17:57181000 chr16:8886167,chr16:8886168 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Zinc_finger__C3HC4_type_(RING_finger)(60%)| zf-C3HC4_3(0%),zf-RING_2(0%)|Aminotran_3(98%) 1 2 2 566 84 ENST00000393066.7 ENST00000564869.1 upstream downstream duplicates(1),mismappers(2),mismatches(1) CGGCGCTGGACCTGAAGAGATGGGGCGCGCAGGTGGGGCGGTTGTCAGAGCCCCCTGACGTGGGCGCCGGGCTTTTATCGGCGATTTGATCTGGCGACCTC...GAG___AGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAGAAATTGCGGGATGCACGCCTGTGTCCTCATTGCTCCAAACTGTGTTGTTTCAGCTGTATTAGG|AGATGGAGTCTCGCGCTGTCACCCAGGCTGGGGTGCAGTGGCAACCCAGTCTCACTCACTGCAACCTCCACCTCCCAGGTTCAAGCCATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATCACAGGTGCCGCCACCACGGCCAGCTAATTTTTGTATTTTCAGTAGAGATGAGGTTTTGCCCCGTTGGCCAGGCTGGTCTCGAACTCCTGACTTCAGCTGATCTGCCCACGTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACTG ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIR|rwslalsprlgcsgnpvsltatstsqvqaillpqspk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20166 ABAT::MSI2 ENSG00000183044.12::ENSG00000153944.12 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABAT ENSG00000183044.12 protein_coding + + chr16:8674596-8784575:+ chr16:8735809:+ chr16:8768453-8878432:+ chr16:8829666:+ MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57529676:+ chr17:55333212-55762050:+ chr17:55607037:+ chr16:8736195,chr16:8736192 chr17:57516036,chr17:57516030 NA NA chr16:8830052,chr16:8830049 chr17:55593397,chr17:55593391 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(31%) |RRM_1(33%) 1 1 2 21 260 ENST00000268251.13 ENST00000284073.7 downstream upstream none CGAGCAGACACCCAGCGCTGCCGGAACTCGGGGCGCGCATCCCGCAAGTCGGAACCCGGCGGATCGGATCCCGCAGATCGGAGACGGGGCCTGGAG___GGTGGCAGCACGCAAAGGGTGTCCCTGTCCCTCAAGGGGTCATGGCCTCCATGTTGCTCGCCCAGCGCCTGGCCTGCAGCTTCCAGCACAGCTACCGCCTGCTGGTGCCTG|GTGGAAGATGCAATGCTGATGTTTGATAAAACTACCAACAGGCACAGAG___GGTTTGGCT...AAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAAATG___GTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTCATGTTCCCACCTGGGACAAGAGGCCGG MASMLLAQRLACSFQHSYRLLVP|ggrcnadv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation 20173 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45255218:+ chr17:43325283-43347191:+ chr17:43332585:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- chr17:45265675,chr17:45265670,chr17:45265667 chr17:45268106,chr17:45268110,chr17:45268114 NA NA chr17:43343042,chr17:43343037,chr17:43343034 chr17:43345473,chr17:43345477,chr17:43345481 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 15 8 6 606 254 ENST00000655903.1 ENST00000344686.8 downstream downstream duplicates(1),mismatches(2) CCGGGGCTGGGCTTCGTGTCCTGCGTTCCGGGAGCGCCAACCCCTCCAG___CAGAGGGGACGTGGCTGGTGGCTGGAGAAGCTGGATTTGCCCTTTGATGGTGGCCCTCTTGATCCCCGGCTTGCTGAAGTCAAA|TGGGAGGTCTGAAGAGCCCTTGGAGGGGAGAATATAAAGAACCAAGACATCCACCGCCAAATCAAGCCAATTACCACCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGCCAAGGGCCCCAGGGCCCCGGCCAGCTGAGGAGACAACAGGCAGAGCCCCTAAGCTCCAGCCTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20174 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45248003:+ chr17:43325283-43347191:+ chr17:43325370:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- chr17:45265675,chr17:45265670,chr17:45265667 chr17:45268106,chr17:45268110,chr17:45268114 NA NA chr17:43343042,chr17:43343037,chr17:43343034 chr17:43345473,chr17:43345477,chr17:43345481 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 0 6 1 633 254 ENST00000657572.1 ENST00000344686.8 downstream downstream none GGCCGGGCTAGTAGGGCTGGATCAGGCGGAAGCCGGGGCCCGGGGCTGGGCTTCGTGTCCTGCGTTCCGGGAGCGCCAACCCCTCCAG|TGGGAGGTCTGAAGAGCCCTTGGAGGGGAGAATATAAAGAACCAAGACATCCACCGCCAAATCAAGCCAATTACCACCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGCCAAGGGCCCCAGGGCCCCGGCCAGCTGAG...AGGCAGAcCCCCTAAGCTCCAGCCTCCTCTCCCACCAGAGCCCCCAGAGCCAAACAAGTCTCCTCCCTTGACTTTGAGCAAGGAGGAGTCTGGGATGTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20175 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45262343:+ chr17:43325283-43347191:+ chr17:43339710:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- chr17:45265675,chr17:45265670,chr17:45265667 chr17:45268106,chr17:45268110,chr17:45268114 NA NA chr17:43343042,chr17:43343037,chr17:43343034 chr17:43345473,chr17:43345477,chr17:43345481 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 5 0 1 17 254 ENST00000586450.6 ENST00000344686.8 downstream downstream mismatches(1) CTGTGATGTCGCCGCCTCTGTGACGTCCCCGCCGCGACCCCACAGGCAGGGAGCCGCATTTAGGTTTCGGGCGGGCGGACGGGGGACGGCCCGAGTGAGGCGTCCTCCGAAGGCTGCGGGCCCGAAGCCAGAACTCCTTCCTCTCCGAAGACCTCGGGGGTGGGGCTCGCGCTTCCGCAGCGGGCCTAGAGCGAGAGGCAGGCGGCAG|TGGGAGGTCTGAAGAGCCCTTGGAGGGGAGAATATAAAGAACCAAGACATCCACCGCCAAATCAAGCCAATTACCACCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGCCAAGGGCCCCAGGGCCCCGGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20176 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45249632:+ chr17:43325283-43347191:+ chr17:43326999:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45267759:- chr17:43340486-43394395:- chr17:43345126:- chr17:45265675,chr17:45265670,chr17:45265667 chr17:45268106,chr17:45268110,chr17:45268114 NA NA chr17:43343042,chr17:43343037,chr17:43343034 chr17:43345473,chr17:43345477,chr17:43345481 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none none 0 1 0 87 254 ENST00000592422.5 ENST00000344686.8 downstream downstream none TGGCGAGATCTCGGCTCACTGCAGCCTCAACCTCCCAAGGCTCAAACGATCCTCTCGCCTCAGCCTTCTGAGTAGCTGGGATCACAG|TGGGAGGTCTGAAG...CCAGACCCTCCATGCCCAGCCGAGAGAGCTTTCGCCAAGGGCCCCAGGGCCCCGGCCAGCTGAGGAGACAACAGGCAGAGCCCCTAAGCTCCAGCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20180 BCL2L13::BID ENSG00000099968.18::ENSG00000015475.19 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17702386:+ chr22:18111621-18213621:+ chr22:18185152:+ BID ENSG00000015475.19 protein_coding - + chr22:17734138-17774770:- chr22:17758155:+ chr22:18216904-18257536:- chr22:18240921:+ chr22:17722008,chr22:17722008 chr22:17744550,chr22:17744547 NA NA chr22:18204774,chr22:18204774 chr22:18227316,chr22:18227313 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Apoptosis_regulator_proteins__Bcl-2_family(100%)| Bcl-2(100%)| 3 7 6 1301 62 ENST00000337612.9 unknown downstream upstream mismatches(2) ATTTTGGTGCCTCTGGTTTTGCTACGACAAATGCTTTTGGAATTGACAAGACGTGGTCAAGAACCTTTGAGCGCACTGCTGCAGTTTGGCGTGACATACCTGGAGGACTATTCGGCAGAGTACATCATTCAGCAAGGTGGCTGG|GTCCCTCAAAGAGCTTAAGTTCCCCAGCTGCTGGCAAGTGACCTTCCTGCCACGCTGTGAGCTGGGGCCGAGCTACTCTTCCCAGGAGGCCGAGACCTCGCAGGCACTGACTCCACGGTCGCCTCAGTTCCTCTAGAAGTGGCTGGTCAGCATCCTTCACAAATACGGCATTCCAGGGAAGGCCCTGGCCGCACTAGGAACTTATCCAGTTATATTTTAGTTTGAGAAAAGGCACAGAC FGASGFATTNAFGIDKTWSRTFERTAAVWRDIPGGLFGRVHHSARWL|gpskslsspaagk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20197 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3473 TRUE 1317 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13958185:- chr21:15281895-15352232:- chr21:15330506:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 0 1 60 7 ENST00000428809.5 ENST00000451663.5 downstream downstream none CTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|CATTTTCCATGAACTGTGTGTGGATTTATTGCCTGCATTGGATGACAAAGTCTTGAGTATTGCTGCTAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20198 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3473 TRUE 1317 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13954150:- chr21:15281895-15352232:- chr21:15326471:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 1 60 20 ENST00000428809.5 ENST00000451663.5 downstream downstream none GGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|CAGTGTGTCCCCAAGAA...ATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTACAGACATTGAGAGCAG___AAAAAGCCTTACCAGTGGCTTCAGAGGAAGAGCAACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20199 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3473 TRUE 1317 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13970110:- chr21:15281895-15352232:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 1 60 12 ENST00000428809.5 ENST00000451663.5 downstream downstream none GGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20201 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000291280.1 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3474 TRUE 1318 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000291280.1 lncRNA - - chr21:13937946-13980437:- chr21:13954150:- chr21:15310267-15352758:- chr21:15326471:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 1 60 20 ENST00000428809.5 ENST00000344693.5 downstream downstream none GGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|CAGTGTGTCCCCAAGAA...ATGGAAGATCCTGCTGTGAAAGGAGCAGTACAAAGAAAGAATGTACAGACATTGAGAGCAG___AAAAAGCCTTACCAGTGGCTTCAGAGGAAGAGCAACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20202 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000291280.1 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3474 TRUE 1318 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000291280.1 lncRNA - - chr21:13937946-13980437:- chr21:13970110:- chr21:15310267-15352758:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 1 60 12 ENST00000428809.5 ENST00000429521.5 downstream downstream none GGGTTAGGGCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20204 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45268108:+ chr17:43325283-43347191:+ chr17:43345475:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45265265:- chr17:43340486-43394395:- chr17:43342632:- NA NA NA NA NA NA NA NA sense sense unknown exon intron inversion low none none none 13 7 5 66 150 ENST00000657572.1 ENST00000344686.8 downstream downstream duplicates(1) GCACAGTCGGTAGAAGCTGAGCTGCTGGGGAAGGGGCTGGAAGAAAGCCCACACCGCAG___GTATCAGTAGCAAATTCAAAAACTACAGAATCAGCTCCAGAGGACTTTGTTAACAAGAAAGAGAAGATTGAAAACAGCCCTGGGGCTACACCAACTCAAG|AGGTGTGAAAGTCCAAATACAGTCTCTTAATGGTGAACACCTGCACATCCGGGAGTTCCACCGGGTCAAAGTGGGAGACATCGCCACTGGCATCAGCAGCCAG___ATCCCAGCTGCAGCCTTCAGCTTGGTCACCAAAGACGGGCAGCCTGTTCGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20205 MAP3K14-AS1::MAP3K14 ENSG00000267278.6::ENSG00000006062.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3467 TRUE 1316 MAP3K14-AS1 ENSG00000267278.6 lncRNA + + chr17:45247916-45269824:+ chr17:45267328:+ chr17:43325283-43347191:+ chr17:43344695:+ MAP3K14 ENSG00000006062.18 protein_coding - - chr17:45263119-45317029:- chr17:45265263:- chr17:43340486-43394395:- chr17:43342630:- chr17:45268114,chr17:45268106,chr17:45268110 chr17:45265667,chr17:45265675,chr17:45265670 NA NA chr17:43345481,chr17:43345473,chr17:43345477 chr17:43343034,chr17:43343042,chr17:43343037 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none none 1 0 1 93 150 ENST00000657572.1 ENST00000344686.8 downstream downstream mismatches(1) GATGCTGAGGCACGAGAGAATTTGCTCCTGCTCCTCCAGAGAAAATGGCTGGGgCAGGCTGTTGAGGAAgAATTCTGCAGGGAAAAGTGGAAGATGGCTGTGAAAGACTGGGAGGAGGCTGGCTGTGTTTTCAGGGGTTCTTCCTGCACAGTCGGTAGAAGCTGAGCTGCTGGGGAAGGGGCTGGAAGAAAGCCCACACCGCAG|GTGTGAAAGTCCAAATACAGTCTCTTAATGGTGAACACCTGCACATCCGGGAGTTCCACCGGGTCAAAGTGGGAGACATCGCCACTGGCATCAGCAGCCAG___ATCCCAGCTGCAGCCTTCAGCTTGGTCACCAAAGACGGGCAGCCTGTTCGCTACGACATGGAGGTGCCAGACTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 14 STE STE-Unique Q99558 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20210 EXOC1::CRACD ENSG00000090989.18::ENSG00000109265.15 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3475 TRUE 1319 EXOC1 ENSG00000090989.18 protein_coding + + chr4:55853648-55905086:+ chr4:55883928:+ chr4:56719814-56771252:+ chr4:56750094:+ CRACD ENSG00000109265.15 protein_coding + + chr4:56049098-56330609:+ chr4:56179284:+ chr4:56915264-57196775:+ chr4:57045450:+ chr4:55886051,chr4:55886060,chr4:55886074,chr4:55886093,chr4:55886097 chr4:56053570,chr4:56053570,chr4:56053570,chr4:56053570,chr4:56053570 NA NA chr4:56752217,chr4:56752226,chr4:56752240,chr4:56752259,chr4:56752263 chr4:56919736,chr4:56919736,chr4:56919736,chr4:56919736,chr4:56919736 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none Exocyst_complex_component_SEC3_N-terminal_PIP2_binding_PH(100%),Exocyst_complex_component_Sec3(37%)|Domain_of_unknown_function_(DUF4592)(100%) Sec3-PIP2_bind(100%),Sec3_C(42%)|DUF4592(100%) 0 3 2 308 56 ENST00000381295.7 ENST00000646253.2 downstream upstream low_entropy(1),mismatches(1) TGCTCCGATATGCCAAGCTGATGGAGTGGCTAAAGAGTACAGATTATGGAAAATATGAAGGACTAACAAAG___AATTACATGGATTATTTATCCCGACTATAT...AAAGAGAAATCAAAGATTTCTTTGAAGTTGCAAAGATCAAGATGACTGGCACAACTAAAGAAAGCAAGAAGTTTG|CTTACAAGAGCAGTGATTCCCAGGCTTTCTCAGCAATGTACCCCATTTCCTGACATTTACAGCTGAAGGTGAAGTTTCCCTTTTGCAAGGAGAAAATTTTGGTGGAGAATTATCCAACAAGAAAAAGACCTGTGGCTATTAAGATAGGTAAGTCTTTTATGTAGAGTATGGAG...___TGACGTTTAACAAAGTCATGGCCAT...CTAAAATAAAATAGATCAAAtAATGAGCTAGAgAAGGAGTCTGCgCATTAAtAAACAAAAACAAAAACCAGCCgGTTCAATTCaTTACAACgGAATCTCTG REIKDFFEVAKIKMTGTTKESKKF|aykssdsqafsamypis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20211 EXOC1::CRACD ENSG00000090989.18::ENSG00000109265.15 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3475 TRUE 1319 EXOC1 ENSG00000090989.18 protein_coding + + chr4:55853648-55905086:+ chr4:55878066:+ chr4:56719814-56771252:+ chr4:56744232:+ CRACD ENSG00000109265.15 protein_coding + + chr4:56049098-56330609:+ chr4:56179284:+ chr4:56915264-57196775:+ chr4:57045450:+ chr4:55886051,chr4:55886060,chr4:55886074,chr4:55886093,chr4:55886097 chr4:56053570,chr4:56053570,chr4:56053570,chr4:56053570,chr4:56053570 NA NA chr4:56752217,chr4:56752226,chr4:56752240,chr4:56752259,chr4:56752263 chr4:56919736,chr4:56919736,chr4:56919736,chr4:56919736,chr4:56919736 NA NA sense sense stop-codon CDS/splice-site 5'UTR/splice-site deletion/read-through low none Exocyst_complex_component_SEC3_N-terminal_PIP2_binding_PH(100%),Exocyst_complex_component_Sec3(32%)|Domain_of_unknown_function_(DUF4592)(100%) Sec3-PIP2_bind(100%),Sec3_C(26%)|DUF4592(100%) 1 0 1 276 56 ENST00000381295.7 ENST00000682029.1 downstream upstream none CTCAACAATGTTTTTGTTCAACAG___AGATTTGCTCCGATATGCCAAGCTGATGGAGTGGCTAAAGAGTACAGATTATGGAAAATATGAAGGACTAACAAAG|CTTACAAGAGCAGTGATTCCCAGGCTTTCTCAGCAATGTACCCCATTTCCTGACATTTACAGCTGAAGGTGAAGTTTCCCTTTTGCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20239 MAML1::C5orf60 ENSG00000161021.13::ENSG00000204661.9 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAML1 ENSG00000161021.13 protein_coding + + chr5:179732822-179777283:+ chr5:179769089:+ chr5:179159823-179204284:+ chr5:179196090:+ C5orf60 ENSG00000204661.9 lncRNA - - chr5:179641544-179645046:- chr5:179641878:- chr5:179068545-179072047:- chr5:179068879:- chr5:179770213 chr5:179642337 NA NA chr5:179197214 chr5:179069338 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none MamL-1_domain(100%)| MamL-1(100%)| 6 12 18 342 99 ENST00000292599.4 ENST00000625191.3 downstream downstream duplicates(3),mismappers(37),mismatches(17) AGCCAAAGCCAGGAAATATGCCTTTCCGATCACTGGTTCCACCTGGCCAG___GAGCAGAACCCTTCCAGTGTCCCTGTGCAAGCCCAGGCTACCAGTGTTGGGACCCAGCCGCCTGCCGTGTCCGTGGCCAGCTCCCACAACAGCTCCCCCTATCTCAGCAGCCAGCAACAGGCCGCTGTAATGAAGCAGCATCAGTTGCTTTTGGACCAACAGAAACAAAGGGAGCAGCAGCAAAAGCATTTACAGCAACAGCAGTTCCTTCAGAGGCAACAGCACCTTCTCGCGGAACAG|ATGGAGTCTCACTCTGTTGCTCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACCACAACCTCCGCCTCCCGGATTCAAGCCATTCTCCTGCCTCAGCCTCCCGAGTAACTGGGATTACAGGCTTGTGCCACCGCACCCAGCTAATTTTTGTAATTTTAGTCGAGAGAAGGTGTCACCATGTTAGCCAGGCTTGTCTTGAACTCCTGACCTTGAGATATCTGCCC PKPGNMPFRSLVPPGQEQNPSSVPVQAQATSVGTQPPAVSVASSHNSSPYLSSQQQAAVMKQHQLLLDQQKQREQQQKHLQQQQFLQRQQHLLAEQ|meshsvaqagvqwhhlgspqppppgfkpfsclslpsnwdyrlvpphpanfcnfsrekvspc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20240 ITIH4::STIMATE-MUSTN1 ENSG00000055955.17::ENSG00000248592.7 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3479 TRUE 1320 ITIH4 ENSG00000055955.17 protein_coding - - chr3:52812962-52830688:- chr3:52829119:- chr3:52846978-52864704:- chr3:52863135:- STIMATE-MUSTN1 ENSG00000248592.7 protein_coding - - chr3:52833121-52897562:- chr3:52835190:- chr3:52867137-52931578:- chr3:52869206:- chr3:52828899,chr3:52828908 chr3:52836366,chr3:52836372 NA NA chr3:52862915,chr3:52862924 chr3:52870382,chr3:52870388 NA NA sense sense out-of-frame CDS/splice-site exon duplication high none Vault_protein_inter-alpha-trypsin_domain(43%)|Musculoskeletal__temporally_activated-embryonic_nuclear_protein_1(100%) VIT(6%)|Mustang(100%) 13 9 13 151 44 ENST00000266041.9 ENST00000495552.1 upstream downstream none GCAGACACTGGAGCCACGATGAAGCCCCCAAGGCCTGTCCGTACCTGCAGCAAAGTTCTCGTCCTGCTTTCACTGCTGGCCATCCACCAGACcACTACTGCCGAAAAG___AATGGCATCGACATCTACAGCCTCACCGTGGACTCCAGGGTCTCATCCCGATTTGCCCACACGGTCGTCACCAGCCGAGTGGTCAATAGGGCCAATACTGTGCAGGAGGCCACCTTCCAGATGGAGCTGCCCAAGAAAGCCTTCATCACCAACTTCTCCAT|GGCTGCAGCCCCCAGGCAGCAGTACTGGGAGCCCCTCTCATCTCCGAGAATAAACTCTGAAGCCAGCGACCCTGCGGACCTGAATCATCAGGGAGCCTGTCAGAGGAGGGGCAGTGACTCTGCGGGACAAGCAAGCAGGCTATATAAGTTTCAGAAGGCTGGGCTCCACTCAGATCTTTTCCAGCAGCTGCTGCCTGCCAGAGAGGCGCCTTCAGAGACCCAGCGCTTACACAATACCCACCATGTCCCAG___GCTGGTGCTCAGGAAGCCCCTATCAAGAAGAAGCGCCC MKPPRPVRTCSKVLVLLSLLAIHQTTTAEKNGIDIYSLTVDSRVSSRFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSm|aaaprqqyweplssprinseasdpadlnhqgacqrrgsdsagqasrlykfqkaglhsdlfqqllpareapsetqrlhnthhvpgwcsgspyqeea NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20241 ITIH4::STIMATE-MUSTN1 ENSG00000055955.17::ENSG00000248592.7 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3479 TRUE 1320 ITIH4 ENSG00000055955.17 protein_coding - - chr3:52812962-52830688:- chr3:52829119:- chr3:52846978-52864704:- chr3:52863135:- STIMATE-MUSTN1 ENSG00000248592.7 protein_coding - - chr3:52833121-52897562:- chr3:52835003:- chr3:52867137-52931578:- chr3:52869019:- chr3:52828899,chr3:52828908 chr3:52836366,chr3:52836372 NA NA chr3:52862915,chr3:52862924 chr3:52870382,chr3:52870388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Vault_protein_inter-alpha-trypsin_domain(43%)|Musculoskeletal__temporally_activated-embryonic_nuclear_protein_1(100%) VIT(6%)|Mustang(100%) 2 3 3 151 77 ENST00000266041.9 ENST00000514466.5 upstream downstream none CGATGAAGCCCCCAAGGCCTGTCCGTACCTGCAGCAAAGTTCTCGTCCTGCTTTCACTGCTGGCCATCCACCAGACcACTACTGCCGAAAAG___AATGGCATCGACATCTACAGCCTCAC...CCGATTTGCCCACACGGTCGTCACCAGCCGAGTGGTCAATAGGGCCAATACTGTGCAGGAGGCCACCTTCCAGATGGAGCTGCCCAAGAAAGCCTTCATCACCAACTTCTCCAT|CTGCTGCCTGCCAGAGAGGCGCCTTCAGAGACCCAGCGCTTACACAATACCCACCATGTCCCAG___GCTGGTGCTCAGGAAGCCCCTATCAAGAAGAAGCGCCCCCCTGTGAAGGAgGAGGACCTGAAGGGGG RFAHTVVTSRVVNRANTVQEATFQMELPKKAFITNFSi|cclperrlqrpsaytiptmsqagaqeapikkkrppvkeedlkg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20244 PHTF2::MAGI2 ENSG00000006576.17::ENSG00000187391.23 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHTF2 ENSG00000006576.17 protein_coding + + chr7:77798773-77957503:+ chr7:77840300:+ chr7:77428090-77586820:+ chr7:77469617:+ MAGI2 ENSG00000187391.23 protein_coding - + chr7:78017055-79453667:- chr7:79102258:+ chr7:77646372-79082983:- chr7:78731574:+ chr7:77868690,chr7:77868675 chr7:79043359,chr7:79043337 NA NA chr7:77498007,chr7:77497992 chr7:78672675,chr7:78672653 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Homeodomain_containing_protein_PHTF1/2__N-terminal(6%)| Phtf-FEM1B_bdg(0%)| 4 3 9 140 30 ENST00000416283.6 unknown downstream upstream duplicates(1),mismappers(3),mismatches(2) TGGCTCCTTGGGCTCTGTTGGCGGCGGCGCTAGCTTCGGAGTCTCCCGCGCGCACCTCAGCCGCCTCCTAGCGGCGCGGCGCTCGCTCCTACG___CCTAAAATGACCAATGTGTGATTTCAGTGGAATAAATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAG|ATGTTGCCAACTTTTTTTGCTCTTAAAAATAAGATCACAATTAATATACCTAAGCTAAATCTCCGCATATATATTTGATTGCTTCCTTAAAAGAATGGATCTTTAGCTGCTGCCTAAATCAAACG___ATTATAACACTGGGACTCAGGGAGGTTACACTTGGATACAGAACATGTGCA MASKVTDAIVWYQKK|mlptffalknkitinipklnlriyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20255 CPNE7::RPL13 ENSG00000178773.15::ENSG00000167526.14 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3481 FALSE NA CPNE7 ENSG00000178773.15 protein_coding + + chr16:89575758-89597246:+ chr16:89588808:+ chr16:89642166-89663654:+ chr16:89655216:+ RPL13 ENSG00000167526.14 protein_coding + + chr16:89560677-89564542:+ chr16:89562335:+ chr16:89627085-89630950:+ chr16:89628743:+ chr16:89589968,chr16:89589963 chr16:89562008,chr16:89562000 NA NA chr16:89656376,chr16:89656371 chr16:89628416,chr16:89628408 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none C2_domain(100%),Copine(13%)|Ribosomal_protein_L13e(26%) C2(100%),Copine(1%)|Ribosomal_L13e(31%) 1 0 6 98 10766 ENST00000319518.13 ENST00000311528.10 downstream upstream mismatches(1) ATCCTGGTGGGGTGTCCTCCCGGAGATCCAGGGAGCCTAGGGGCTGGCAGGTTTTGAGGAGACCTCTCCTGGCCCTGTGTAGCAGGTGGGTCAGCCCCAAC...TTTCTCTACCTGTCAGGAGCGGGTTCGGGGAGCCCCGGCCCAGCACAGCTCCTGGCTCCCGGCCCACTGCAGGTGGCCATTGACTTCACCGCCTCCAATGGAGACCCGCGGAACAGCTGCTCCCTGCACTACATCAACCCCTACCAGCCGAACGAGTACCTGAAGGCACTGGTGTCCGTGGGCGAGATCTGCCAGGACTATGACAG|GCTGAAGAACTGAAACTGGCCACCCAGCTGACCGGACCGGTCATGCCCGTCCGGAAC___GTCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGTATGGCCCGTGCCAACGCC flylsgagsgspgpaqllapgplqVAIDFTASNGDPRNSCSLHYINPYQPNEYLKALVSVGEICQDYDr|lkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20258 OMG::NF1 ENSG00000126861.5::ENSG00000196712.20 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OMG ENSG00000126861.5 protein_coding - + chr17:31272013-31297539:- chr17:31277150:+ chr17:29599031-29624557:- chr17:29604168:+ NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31201037:+ chr17:29421945-29709134:+ chr17:29528055:+ chr17:31278881,chr17:31278862,chr17:31278850 chr17:31200952,chr17:31200947,chr17:31200947 NA NA chr17:29605899,chr17:29605880,chr17:29605868 chr17:29527970,chr17:29527965,chr17:29527965 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |Divergent_CRAL/TRIO_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%) |CRAL_TRIO_2(100%),EVI2A(100%),LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%),MOR2-PAG1_mid(100%),RasGAP(100%) 1 1 1 7 71 unknown ENST00000356175.7 downstream upstream none GTTACCCAGAAAATCATGAGGAAGAGAAAATATATTTACTGTTCTCTGAGTGGAAGTGGATTATCACGAAGGTCTTCATCCTCTTTATCTTCATGTTGA|AACCTGCTTTTTAATCCAAGTAAGCCATTCTCAAGAGGCAGTCAGCCTGCAGATGTGGATCTAATGATTGACTGCCTTGTTTCTTGCTTTCGTATAAGCCCTCACAACAACCAACACTTTAAG___ATCTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation 20266 ENSG00000243696::STIMATE-MUSTN1 ENSG00000243696.5::ENSG00000248592.7 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000243696 ENSG00000243696.5 protein_coding - - chr3:52813282-52835729:- chr3:52829119:- chr3:52847298-52869745:- chr3:52863135:- STIMATE-MUSTN1 ENSG00000248592.7 protein_coding - - chr3:52833121-52897562:- chr3:52835003:- chr3:52867137-52931578:- chr3:52869019:- chr3:52828899,chr3:52828908 chr3:52836366,chr3:52836372 NA NA chr3:52862915,chr3:52862924 chr3:52870382,chr3:52870388 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication low none |Musculoskeletal__temporally_activated-embryonic_nuclear_protein_1(100%) Mustang(100%),VIT(6%)|Mustang(100%) 2 3 3 151 77 ENST00000468472.1 ENST00000514466.5 upstream downstream none CGATGAAGCCCCCAAGGCCTGTCCGTACCTGCAGCAAAGTTCTCGTCCTGCTTTCACTGCTGGCCATCCACCAGACcACTACTGCCGAAAAG___AATGGCATCGACATCTACAGCCTCAC...CCGATTTGCCCACACGGTCGTCACCAGCCGAGTGGTCAATAGGGCCAATACTGTGCAGGAGGCCACCTTCCAGATGGAGCTGCCCAAGAAAGCCTTCATCACCAACTTCTCCAT|CTGCTGCCTGCCAGAGAGGCGCCTTCAGAGACCCAGCGCTTACACAATACCCACCATGTCCCAG___GCTGGTGCTCAGGAAGCCCCTATCAAGAAGAAGCGCCCCCCTGTGAAGGAgGAGGACCTGAAGGGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20268 SH3RF2::ENSG00000251031 ENSG00000156463.18::ENSG00000251031.2 RERFLCMS SRR8615993 SRR8670760 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SH3RF2 ENSG00000156463.18 protein_coding + + chr5:145936578-146081791:+ chr5:145938171:+ chr5:145316141-145461354:+ chr5:145317734:+ ENSG00000251031 ENSG00000251031.2 lncRNA - + chr5:144856890-145228982:- chr5:145168590:+ chr5:144236453-144608545:- chr5:144548153:+ chr5:145993058,chr5:145993059,chr5:145993056 chr5:145125453,chr5:145125159,chr5:145125448 NA NA chr5:145372621,chr5:145372622,chr5:145372619 chr5:144505016,chr5:144504722,chr5:144505011 NA NA sense antisense unknown CDS intron duplication/5'-5' low none RING-type_zinc-finger(100%)| zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%)| 0 0 5 71 1 ENST00000511217.1 unknown downstream upstream none CTGCGGTGCCCCGAATGCAGGACGCCTGTGTTTTCCAACATTGAGGCGCTGCCGGCCAACCTGCTGCTCGTGCGCCTTCTGGATGGAGTGCGCTCAGGGCAGAGC...|...GGTGAATGTGAAAAGGAGCTGAAGAAGCCTCAGCATCACTCTGATGCCTCCCTGGATGAGATCACATGCTGATGGAGCAGCTTGAAATGGGTCCATGCAGTTCTTATATAGCTCACCTTCTTGAAGGGAATCTGCATTTCATGGAATAATATAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20288 KRT7::SMIM41 ENSG00000135480.17::ENSG00000284791.2 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3484 TRUE 1321 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52248211:+ chr12:52626304-52645970:+ chr12:52641995:+ SMIM41 ENSG00000284791.2 protein_coding + + chr12:52079704-52108255:+ chr12:52107379:+ chr12:52473488-52502039:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Intermediate_filament_protein(100%),Keratin_type_II_head(100%)| Filament(100%),GA(100%),Keratin_2_head(100%)| 12 34 107 5973 460 ENST00000331817.6 ENST00000546390.2 downstream upstream duplicates(28),mismatches(22) GCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAAGCCGCCCTGCAGCGGGcCAAGCAGGATATGGCACGGCAGCTGCGTGAGTACCAGGAACTCATGAGCGTGAAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCG___GTTGGCTGGAGATGGAGTGGGAGCCGTGAATATCT|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTC LALKDARAKQEELEAALQRaKQDMARQLREYQELMSVKLALDIEIATYRKLLEGEESRLAGDGVGAVNI|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20289 KRT7::SMIM41 ENSG00000135480.17::ENSG00000284791.2 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3484 TRUE 1321 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52245632:+ chr12:52626304-52645970:+ chr12:52639416:+ SMIM41 ENSG00000284791.2 protein_coding + + chr12:52079704-52108255:+ chr12:52107379:+ chr12:52473488-52502039:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication high none Intermediate_filament_protein(99%),Keratin_type_II_head(100%)| Filament(82%),GA(100%),Keratin_2_head(100%)| 11 32 98 6367 460 ENST00000331817.6 ENST00000546390.2 downstream upstream duplicates(28),mismatches(29) TCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCTGAGATCGACAACATCAAGAACCAG___CGTGCCAAGTTGGAGGCCGCCATTGCCGAGGCTGAGGAGCGTGGGGAGCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAAGCCGCCCTGCAGCGGGcCAAGCAGGATATGGCACGGCAGCTGCGTGAGTACCAGGAACTCATGAGCGTGAAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCG|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTCTCTCTTTGCCATTTTT SEMNRAIQRLQAEIDNIKNQRAKLEAAIAEAEERGELALKDARAKQEELEAALQRaKQDMARQLREYQELMSVKLALDIEIATYRKLLEGEESr|tsedpdrqlvlaglflsmclvmvlgnlliirp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20291 KRT7::SMIM41 ENSG00000135480.17::ENSG00000284791.2 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3484 TRUE 1321 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52243137:+ chr12:52626304-52645970:+ chr12:52636921:+ SMIM41 ENSG00000284791.2 protein_coding + + chr12:52079704-52108255:+ chr12:52107379:+ chr12:52473488-52502039:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none Intermediate_filament_protein(76%),Keratin_type_II_head(100%)| Filament(65%),GA(100%),Keratin_2_head(100%)| 1 5 12 8345 460 ENST00000331817.6 ENST00000546390.2 downstream upstream duplicates(4),mismatches(1) TCCCTGGACCTGGACGGCATCATCGCTGAGGTCAAGGCaCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGCTGAAGCCTGGTACCAGACCAAG___TTTGAGACCCTCCAGGCCCAGGCTGGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCTGAGATCGACAACATCAAGAACCAG|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTCTCTCTTTGCCATTTTTGGAGGCACGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACCGGTTTGTAGCCA SLDLDGIIAEVKAQYEEMAKCSRAEAEAWYQTKFETLQAQAGKHGDDLRNTRNEISEMNRAIQRLQAEIDNIKNQ|nlrgsrsaagpcwtvpvhvpghgagepahhpamspdshlhtsmyfflsnlslpdigftsttvpqmtvdiqsrsrvisyagcltqkslfaifggteerhapecdgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20292 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52248211:+ chr12:52626304-52645970:+ chr12:52641995:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Intermediate_filament_protein(100%),Keratin_type_II_head(100%)| Filament(100%),GA(100%),Keratin_2_head(100%)| 12 34 107 5973 460 ENST00000331817.6 ENST00000546981.1 downstream upstream duplicates(28),mismatches(22) GCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAAGCCGCCCTGCAGCGGGcCAAGCAGGATATGGCACGGCAGCTGCGTGAGTACCAGGAACTCATGAGCGTGAAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCG___GTTGGCTGGAGATGGAGTGGGAGCCGTGAATATCT|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTC LALKDARAKQEELEAALQRaKQDMARQLREYQELMSVKLALDIEIATYRKLLEGEESRLAGDGVGAVNI|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20293 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52245632:+ chr12:52626304-52645970:+ chr12:52639416:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Intermediate_filament_protein(99%),Keratin_type_II_head(100%)| Filament(82%),GA(100%),Keratin_2_head(100%)| 11 32 98 6367 460 ENST00000331817.6 ENST00000546981.1 downstream upstream duplicates(28),mismatches(29) TCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCTGAGATCGACAACATCAAGAACCAG___CGTGCCAAGTTGGAGGCCGCCATTGCCGAGGCTGAGGAGCGTGGGGAGCTGGCGCTCAAGGATGCTCGTGCCAAGCAGGAGGAGCTGGAAGCCGCCCTGCAGCGGGcCAAGCAGGATATGGCACGGCAGCTGCGTGAGTACCAGGAACTCATGAGCGTGAAGCTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGAGCCG|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTCTCTCTTTGCCATTTTT SEMNRAIQRLQAEIDNIKNQRAKLEAAIAEAEERGELALKDARAKQEELEAALQRaKQDMARQLREYQELMSVKLALDIEIATYRKLLEGEESr|tsedpdrqlvlaglflsmclvmvlgnlliirp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20295 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52243137:+ chr12:52626304-52645970:+ chr12:52636921:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Intermediate_filament_protein(76%),Keratin_type_II_head(100%)| Filament(65%),GA(100%),Keratin_2_head(100%)| 1 5 12 8345 460 ENST00000331817.6 ENST00000546981.1 downstream upstream duplicates(4),mismatches(1) TCCCTGGACCTGGACGGCATCATCGCTGAGGTCAAGGCaCAGTATGAGGAGATGGCCAAATGCAGCCGGGCTGAGGCTGAAGCCTGGTACCAGACCAAG___TTTGAGACCCTCCAGGCCCAGGCTGGGAAGCATGGGGACGACCTCCGGAATACCCGGAATGAGATTTCAGAGATGAACCGGGCCATCCAGAGGCTGCAGGCTGAGATCGACAACATCAAGAACCAG|AACCTCAGAGGATCCAGAtCGGCAGCTGGTCCTTGCTGGACTGTTCCTGTCCATGTGCCTGGTCATGGTGCTGGGGAACCTGCTCATCATCCGGCCATGAGCCCTGACTCCCACCTCCACACCTCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCCAGATGACTGTGGACATCCAGTCTCGCAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGAAGTCTCTCTTTGCCATTTTTGGAGGCACGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACCGGTTTGTAGCCA SLDLDGIIAEVKAQYEEMAKCSRAEAEAWYQTKFETLQAQAGKHGDDLRNTRNEISEMNRAIQRLQAEIDNIKNQ|nlrgsrsaagpcwtvpvhvpghgagepahhpamspdshlhtsmyfflsnlslpdigftsttvpqmtvdiqsrsrvisyagcltqkslfaifggteerhapecdgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20306 RASSF8::TSPAN9 ENSG00000123094.16::ENSG00000011105.14 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1895 TRUE 3487 TRUE 1323 RASSF8 ENSG00000123094.16 protein_coding + + chr12:25958232-26079892:+ chr12:25959148:+ chr12:26111165-26232825:+ chr12:26112081:+ TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3278421:+ chr12:3186521-3395730:+ chr12:3387587:+ chr12:25961524,chr12:25961521,chr12:25961524,chr12:25961500,chr12:25961518,chr12:25961522 chr12:3261658,chr12:3261658,chr12:3261663,chr12:3261651,chr12:3261649,chr12:3261682 NA NA chr12:26114457,chr12:26114454,chr12:26114457,chr12:26114433,chr12:26114451,chr12:26114455 chr12:3370824,chr12:3370824,chr12:3370829,chr12:3370817,chr12:3370815,chr12:3370848 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Tetraspanin_family(94%) |Tetraspanin(5%) 1 71 5 15 807 ENST00000381352.7 ENST00000537971.5 downstream upstream duplicates(15),mismappers(5),mismatches(3) CCGCCGCGTCCCCAGCGCCCCGGCCGGCCCCTCTGGGCGGCCTGCGGGGGCGGCGCAGTTGCGAAACTGA|CTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCGTGTCCCAAGGCAACTTTGCCACCTTCTCCCCCAGCTTCCCTTCGTTGTCTGCAGCCAACCTGGTCATcGCCATAGGCACCATTGTCATGGTGACGGGCTTCCTCGGCTGCCTGGGGGCCATCAAGGAAAACAAGTGCCTCCTCCTCAGC___TTTTTCATCGTCCTGTTGGTCATCCTCCTAGCAGAGCTGATCTTACTCATCCTCTTCTTTGTCTACATGGACAAG___GTGAACGAGAACGCCAAGAAGGACCTGAAGGAAGGCCTGCTGCTGTACCACACtGAGAACAACGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20307 RASSF8::TSPAN9 ENSG00000123094.16::ENSG00000011105.14 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3487 TRUE 1323 RASSF8 ENSG00000123094.16 protein_coding + + chr12:25958232-26079892:+ chr12:25958342:+ chr12:26111165-26232825:+ chr12:26111275:+ TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3278421:+ chr12:3186521-3395730:+ chr12:3387587:+ chr12:25961524,chr12:25961521,chr12:25961524,chr12:25961500,chr12:25961518,chr12:25961522 chr12:3261658,chr12:3261658,chr12:3261663,chr12:3261651,chr12:3261649,chr12:3261682 NA NA chr12:26114457,chr12:26114454,chr12:26114457,chr12:26114433,chr12:26114451,chr12:26114455 chr12:3370824,chr12:3370824,chr12:3370829,chr12:3370817,chr12:3370815,chr12:3370848 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Tetraspanin_family(94%) |Tetraspanin(5%) 0 7 3 21 807 ENST00000689434.1 ENST00000537971.5 downstream upstream duplicates(2) GGGCAGTTTGACAAGTCTCAGCCCCGGGCGATGGAAGATTTTGCCCGTGGGACCGTCACGAGCCACCGGTCATCTCCCCGCGCCCGGCTTTCGGGTCCTCAGGCCTCG|CTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCGTGTCCCAAGGCAACTTTGCCACCTTCTCCCCCAGCTTCCCTTCGTTGTCTGCAGCCAACCTGGTCATcGCCATAGGCACCATTGTCATGGTGACGGGCTTCCTCGGCTGCCTGGGGGCCATCAAGGAAAACAAGTGCCTCCTCCTCAGC___TTTTTCATCGTCCTGTTGGTCATCCTCCTAGCAGAGCTGATCTTACTCATCCTCTTCTTTGTCTACATGGACAAG___GTGAACGAGAACGCCAAGAAGGACCTGAAGGAAGGCCTGCTGCTGTACCACACtGAGAACAACGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20308 GALNT8::PRMT8 ENSG00000130035.9::ENSG00000111218.12 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1896 TRUE 3488 TRUE 1324 GALNT8 ENSG00000130035.9 protein_coding + + chr12:4720400-4851927:+ chr12:4765546:+ chr12:4829566-4961093:+ chr12:4874712:+ PRMT8 ENSG00000111218.12 protein_coding + + chr12:3381349-3593973:+ chr12:3553651:+ chr12:3490515-3703139:+ chr12:3662817:+ chr12:4785425,chr12:4785409,chr12:4785381,chr12:4785421 chr12:3552056,chr12:3552036,chr12:3552036,chr12:3552049 NA NA chr12:4894591,chr12:4894575,chr12:4894547,chr12:4894587 chr12:3661222,chr12:3661202,chr12:3661202,chr12:3661215 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Glycosyl_transferase_family_2(100%),Ricin-type_beta-trefoil_lectin_domain(72%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(58%) Glycos_transf_2(100%),Ricin_B_lectin(23%)|Methyltransf_11(81%),Methyltransf_25(81%),PrmA(80%) 20 13 28 620 475 ENST00000252318.7 ENST00000452611.6 downstream upstream duplicates(8) CCGGGATCCCAGCCCTCTGCTCCTTGTGGCTGGTCGTTCCTGGTGTCCTCG___ATGAAAAACCTATTGGATGAAAATGTCTGCTTGGATCAGGGACCCtTTCCAGGCAACACCCCCATCATGTATTACTGCCATGAATTCAGCTCACAG___AATGTCTACTATCACCTAACTGGGGAGCTCTATGTGGGACAACTGATTGCAGAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCTGGCAAGGCGGAGAAGCCCACCTTAGAACCATGCTCCAAGGCAGCTAAGAATAGACTGCATATATATTGGGATTTTAAACCG|ATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACA___TCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCG...GGACAAGTGGCTG___...AAACCTGGAG...TAGCGATTGAAGAC...___GGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAG pgsqpsapcgwsflvssMKNLLDENVCLDQGPfPGNTPIMYYCHEFSSQNVYYHLTGELYVGQLIAEASASDRCLTDPGKAEKPTLEPCSKAAKNRLHIYWDFKP|IECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIIS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20309 GALNT8::PRMT8 ENSG00000130035.9::ENSG00000111218.12 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3488 TRUE 1324 GALNT8 ENSG00000130035.9 protein_coding + + chr12:4720400-4851927:+ chr12:4765546:+ chr12:4829566-4961093:+ chr12:4874712:+ PRMT8 ENSG00000111218.12 protein_coding + + chr12:3381349-3593973:+ chr12:3552703:+ chr12:3490515-3703139:+ chr12:3661869:+ chr12:4785425,chr12:4785409,chr12:4785381,chr12:4785421 chr12:3552056,chr12:3552036,chr12:3552036,chr12:3552049 NA NA chr12:4894591,chr12:4894575,chr12:4894547,chr12:4894587 chr12:3661222,chr12:3661202,chr12:3661202,chr12:3661215 NA NA sense sense unknown CDS/splice-site exon/splice-site duplication high none Glycosyl_transferase_family_2(100%),Ricin-type_beta-trefoil_lectin_domain(72%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(58%) Glycos_transf_2(100%),Ricin_B_lectin(23%)|Methyltransf_11(86%),Methyltransf_25(86%),PrmA(85%) 1 1 30 620 98 ENST00000542998.5 ENST00000261252.4 downstream upstream duplicates(5) ACCCCCATCATGTATTACTGCCATGAATTCAGCTCACAG___AATGTCTACTATCACCTAACTGGGGAGCTCTATGTGGGACAACTGATTGCAGAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCTGGCAAGGCGGAGAAGCCCACCTTAGAACCATGCTCCAAGGCAGCTAAGAATAGACTGCATATATATTGGGATTTTAAACCG|GTGCCCTCACCCTTCCTCAAGGCGTGGCCAGAGGCGTCAGAAACTCCCTCAGTGCCCCTTTGCGAGTACTTCTCAAGGGAATGGTCCCTGCCCGAGGCCTGGGGGTAGTCTGAGGGGCCCCCAAGTGTGGAG___ATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACA___TCATCACCATATTTAAG...AGTCCATGCTCAACACGGTGATCTTTGCCAGGGACAAGTGGCTG___AAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20310 GALNT8::PRMT8 ENSG00000130035.9::ENSG00000111218.12 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3488 TRUE 1324 GALNT8 ENSG00000130035.9 protein_coding + + chr12:4720400-4851927:+ chr12:4764047:+ chr12:4829566-4961093:+ chr12:4873213:+ PRMT8 ENSG00000111218.12 protein_coding + + chr12:3381349-3593973:+ chr12:3553651:+ chr12:3490515-3703139:+ chr12:3662817:+ chr12:4785425,chr12:4785409,chr12:4785381,chr12:4785421 chr12:3552056,chr12:3552036,chr12:3552036,chr12:3552049 NA NA chr12:4894591,chr12:4894575,chr12:4894547,chr12:4894587 chr12:3661222,chr12:3661202,chr12:3661202,chr12:3661215 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Glycosyl_transferase_family_2(100%),Ricin-type_beta-trefoil_lectin_domain(28%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(58%) Glycos_transf_2(100%),Ricin_B_lectin(7%)|Methyltransf_11(81%),Methyltransf_25(81%),PrmA(80%) 1 0 3 654 475 ENST00000252318.7 ENST00000452611.6 downstream upstream none CCGGGATCCCAGCCCTCTGCTCCTTGTGGCTGGTCGTTCCTGGTGTCCTCG___ATGAAAAACCTATTGGATGAAAATGTCTGCTTGGATCAGGGACCCtTTCCAGGCAACACCCCCATCATGTATTACTGCCATGAATTCAGCTCACAG|ATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACA___TCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGAT pgsqpsapcgwsflvssMKNLLDENVCLDQGPfPGNTPIMYYCHEFSSQ|IECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20319 USP43::CNTLN ENSG00000154914.17::ENSG00000044459.15 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1900 FALSE NA FALSE NA USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9666751:+ chr17:9548015-9633004:+ chr17:9570068:+ CNTLN ENSG00000044459.15 protein_coding + + chr9:17134982-17503923:+ chr9:17226203:+ chr9:17134980-17503921:+ chr9:17226201:+ chr17:9674184,chr17:9674183 chr9:17213328,chr9:17213324 NA NA chr17:9577501,chr17:9577500 chr9:17213326,chr9:17213322 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ubiquitin_carboxyl-terminal_hydrolase(24%)| UCH(32%)| 6 9 18 72 81 ENST00000285199.12 ENST00000380647.8 downstream upstream duplicates(6),mismatches(1) GTTTCCAAGTACGGCTCTCAGTTCCAAGGCAATTCCCAGCACGACGCCCTGGAATTCCTGCTCTGGTTGCTGGATCGTGTACATGAGGACCTGGAGGGTTCATCCCGAGGGCCGGTGTCGGAGAAG___CTTCCGCCTGAAGCCACTAAAACCTCTGAGAACTGCCTGTCACCATCAGCTCAGCTTCCTCTAGGTCAAAGCTTTGTGCAAAGCCACTTTCAAGCACAATATAG|AGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAGAAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAG___AGAGAGTCAGTACTGAAACAGGAAATAAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGACTTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAG___GACACTAAGGAGTGTGTACAGAACAAAGAAGAGCAAAACAGACTAGTTATAAAAAATCTGGAG VSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEATKTSENCLSPSAQLPLGQSFVQSHFQAQYr|EKQKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20320 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1901 TRUE 3491 TRUE 1325 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245646280:+ chr1:245318287-245872734:+ chr1:245809582:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245121920:+ chr1:245132984-245290466:+ chr1:245285222:+ chr1:245663543,chr1:245663541 chr1:245086179,chr1:245086174 NA NA chr1:245826845,chr1:245826843 chr1:245249481,chr1:245249476 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Kinesin_motor_domain(85%)| Kinesin(53%),Microtub_bd(100%)| 7 2 13 93 25 ENST00000407071.7 ENST00000366522.6 downstream upstream duplicates(5),mismappers(7),mismatches(3) TGAGGACGACCACCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAA___TGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGTCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAA|ATGGAGTTTCGCTCCGTCGCCCAGGCTGAAGTGCAGTGGCGTGATCTTGGCTCGTTGCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATGACAGGCACACACCACCACGCCTGGCTAATTTCTGTATTTTTAGTAGAGACGGGGTTTCACCATGGTCTGGTGACCTCCTGGTCTCGAACTCCTGACCTCAAGTGATCCTCCC EDDHRNSHVFFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHIPYk|wsfapsprlkcsgvilarcnlhlpgsrdspasas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20321 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1902 TRUE 3491 TRUE 1325 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245646280:+ chr1:245318287-245872734:+ chr1:245809582:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245087245:+ chr1:245132984-245290466:+ chr1:245250547:+ chr1:245663543,chr1:245663541 chr1:245086179,chr1:245086174 NA NA chr1:245826845,chr1:245826843 chr1:245249481,chr1:245249476 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Kinesin_motor_domain(85%)|EF-hand_domain_pair(51%) Kinesin(53%),Microtub_bd(100%)|EF-hand_7(2%) 4 1 12 93 40 ENST00000407071.7 ENST00000366523.6 downstream upstream duplicates(5),mismappers(8),mismatches(3) GACCACCGCAACTCACACGTGTTCTTCACACTGCACATCTACCAGTACCGGATGGAGAAGAGCGGGAAAGGGGGAA___TGTCTGGAGGTCGCAGCCGCCTGCATCTCATTGATCTCGGCAGCTGTGTGAAAGCTCTTAGCAAAAATCGAGAAGGAGGCTCAGGGCTGTGTCTCTCGCTGTCTGCTCTGGGCAATGTCATCCTGGCTCTCGTCAATGGCAGCAAACACATTCCATACAA|GTGAGCCTTTTTCTCAAGAGGAAATGGAAGAAATGTTGTCTGCTGCAATTGATCCAGAATCAAATTCAATTAATTACAAGGACTATATAAC...AAATTAAATGTTCTAAAGATAATTTCTGATTGAAAGAACAATTTTAGAAATTGCTTGTTCTTGTTAATTTCACATCTTATCTTAGGATTCCTATATGTGATATTTAATACCTTGTGACATAACTATTTTAAGACACTTTGTTTTTAAAGATGATCG DHRNSHVFFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHIPYk|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20324 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1903 TRUE 3493 TRUE 1326 HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63833822:- chr15:63900817-64126147:- chr15:64126021:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:63908600:- chr15:64199235-64364232:- chr15:64200799:- chr15:63819617,chr15:63819622,chr15:63819627 chr15:63909835,chr15:63909837,chr15:63909837 NA NA chr15:64111816,chr15:64111821,chr15:64111826 chr15:64202034,chr15:64202036,chr15:64202036 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 8 13 31 51 ENST00000443617.7 ENST00000457488.6 upstream downstream duplicates(2),mismatches(2) TGACAAGTCGCTGCTGCTGCAGCAAAAATAAAGGACGCGACCGCCGCAGCCTCTGCGGAGCCGGGCTCGGGTCGCCGGAGCCGCGCCCCACCCCGCCAGCTCCAGAGCCACGTACG|AGGAACTGTGAGAGTGACACTGAGGAGGACATCGCCAGGAGGAAAGCCCTCCACCCACGGAGGAGGAGCAGCACCTCCTAACTGGCCTGACCTGCAGTGGCCGCCAGGGAGGTCTGGGCCCAGCGGGGCTCCCTTCTGTGCAGACTTTTGGACCCAGCTCAGCACCAGCACCCGGGCGTCCTGAGCACTTTGCAAGAGAGATGGGCCCAAGGAATTCAGAAGAGCTTGCAGGCAAGCCAGGAGACCCTGGGAGCTGTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 TRUE,TRUE,TRUE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20325 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1904 TRUE 3493 TRUE 1326 HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63833827:- chr15:63900817-64126147:- chr15:64126026:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:63908600:- chr15:64199235-64364232:- chr15:64200799:- chr15:63819617,chr15:63819622,chr15:63819627 chr15:63909835,chr15:63909837,chr15:63909837 NA NA chr15:64111816,chr15:64111821,chr15:64111826 chr15:64202034,chr15:64202036,chr15:64202036 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 6 9 31 51 ENST00000443617.7 ENST00000457488.6 upstream downstream duplicates(2),mismatches(1) GCCGCCTCTTACGTCTTTCCCTTTGACAAGTCGCTGCTGCTGCAGCAAAAATAAAGGACGCGACCGCCGCAGCCTCTGCGGAGCCGGGCTCGGGTCGCCGGAGCCGCGCCCCACCCCGCCAGCTCCAGAGCCAC|AGGAACTGTGAGAGTGACACTGAGGAGGACATCGCCAGGAGGAAAGCCCTCCACCCACGGAGGAGGAGCAGCACCTCCTAACTGGCCTGACCTGCAGTGGCCGCCAGGGAGGTCTGGGCCCAGCGGGGCTCCCTTCTGTGCAGACTTTTGGACCCAGCTCAGCACCAGCACCCGGGCGTCCTGAGCACTTTGCAAGAGAGATGGGCCCAAGGAATTCAGAAGAGCTTGCAGGCAAGCCAGGAGACCCTGGGAGCTGTGGCTGTCTTCTGTGGAGGAGGCTCCAGCATTCCCAAAGCTCTTAATTCTCCATAAAATGGGCTTTCCTCTGTCTGCCATCCTCAGAGTCTGGGGTGGGAGTGTGGACTTAGGAAAACAATATAAAGGACATCCTCATCATCACGGGGTGAAGGTCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 TRUE,TRUE,TRUE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20327 AGAP1::IQCA1 ENSG00000157985.20::ENSG00000132321.17 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235930923:+ chr2:236402687-237040437:+ chr2:236839567:+ IQCA1 ENSG00000132321.17 protein_coding - + chr2:236324147-236507535:- chr2:236350770:+ chr2:237232790-237416178:- chr2:237259413:+ chr2:235964530 chr2:236347629 NA NA chr2:236873174 chr2:237256272 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Ras_family(100%)| Ras(100%)| 2 6 6 71 33 ENST00000304032.13 unknown downstream upstream duplicates(1),low_entropy(1),mismatches(2) GGCCACCCCGAGCCACGTCAGCCTGCGCACCCATCTCCAGCCCTAAAACCAATGGCCTATCCAAGGACATGAGCAGTTTACACATCTCACCCAATTCAG___GGAATGTCACTAGTGCATCTGGGTCTCAGATGGCAAGCGGCATCAGCCTGGTCTCCTTCAACAGCCGACCCGACGGCATGCACCAGCGCTCCTACTCAGTCTCCAGTGCCGACCAGTGGAGTGAGGCTACGGTCATTGCAAACTCGGCCATCAGCAGTG|CAGGAAGAATGCTAAAACCATCACTGTCTTGCCCTCCAGAGCTCGGATCTCTGGCTTTCCTGACCTTCCCCTGGGGAAGCTGAGGGGCCTGCTGGTCACAGGACCCCTGGTGACCATGTTCAGGTCTGGCCAGAAAGAAGATGGGCATGGAAACTGGGGCAGTGTCAAGCGGAAGCTACTTCGTCCAGGAGGGATGAAAGGGACAGAGGCTGCTTCTCTTGGAG PPRATSACAPISSPKTNGLSKDMSSLHISPNSGNVTSASGSQMASGISLVSFNSRPDGMHQRSYSVSSADQWSEATVIANSAISS|agrmlkpslscppelgslafltfpwgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20331 ZNRF3::TTC28 ENSG00000183579.16::ENSG00000100154.15 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNRF3 ENSG00000183579.16 protein_coding + + chr22:28883572-29057488:+ chr22:29042569:+ chr22:29279560-29453476:+ chr22:29438557:+ TTC28 ENSG00000100154.15 protein_coding - + chr22:27978014-28679840:- chr22:28673074:+ chr22:28374002-29075828:- chr22:29069062:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none ZNRF-3_Ectodomain(62%)| ZNRF_3_ecto(98%)| 6 2 0 78 26 ENST00000544604.7 unknown downstream upstream duplicates(9),mismappers(4),mismatches(4) TCGTGCAG___ATGCACCCACTGGGCCTATGTAATAACAATGACGAAGAGGACTTGTATGAATATGGCTGGG?AGGAGTGGTGAAGCTGGAACAGCCAGAATTGGACCCGAAACCATGCCTCACTGTCCTAGGCAAG___GCCAAGCGAGCAGTACAGCGGGGAGCTACTGCAGTCATCTTTGATGTGTCTGAAAACCCAGAAGCTATTGATCAG|GAGTTAAAAAAAGAAGTTGGGCCGGGAGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTTAGCTAGACTTGGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAAACTGAGGCAGGAGAATGGCGTGAACCCAGAAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGACT VQMHPLGLCNNNDEEDLYEYGW?GVVKLEQPELDPKPCLTVLGKAKRAVQRGATAVIFDVSENPEAIDQ|elkkevgpgavahtcnpstlgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc and ring finger 3 2 colorectal cancer, adrenocortical carcinoma, gastric cancer epithelial TSG nonsense, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 20332 RRP12::R3HCC1L ENSG00000052749.14::ENSG00000166024.14 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRP12 ENSG00000052749.14 protein_coding - - chr10:97356358-97426076:- chr10:97396218:- chr10:99116115-99185833:- chr10:99155975:- R3HCC1L ENSG00000166024.14 protein_coding + - chr10:98134624-98244897:+ chr10:98141914:- chr10:99894381-100004654:+ chr10:99901671:- chr10:97393959,chr10:97393959,chr10:97393962 chr10:98178764,chr10:98178762,chr10:98178764 NA NA chr10:99153716,chr10:99153716,chr10:99153719 chr10:99938521,chr10:99938519,chr10:99938521 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 3 1 4 467 15 ENST00000536831.5 unknown upstream downstream mismatches(2) GGCCGTCAG___GAAGGAGTGACCTGACAGTCGATGCTGTGAAGTTACATAATGAGCTGCAGTCAGGGTCCTTGCGCTTGGGCAAAAGCGAAGCCCCGGAGA...CCATGGAAGAAGAGGCGGAGCTGGTTCTCACCGAGAAGTCCTCGGGTACCTTCCTGAGTGGCCTTTCCGACTGCACAAACGTCACCTTCAGCAAAGTACAGCGCTTCTGGGAGTCCAACTCGGCTGCCCACAAGGAG___ATCTGTGCTGTTCTGGCTGCTGTCACTGAGGTGATTCGCTCCCAGGGAGGGAAGGAGACGGAGACTGAGTACTTCGCTGCTCTG|TGACTCTGACACTCCTGTGAGAAGCAGATCCCATGTAACTGTCACTCTCTCCTTGAATCTGGCAAGCTTGTGATACTACAGAACTTCTAAGGCTTGGTCACAAAAAGTAATGCAGTTTCC...GTTCACTCTTAGAAAACAGCCACCACCATGCTGCAAAGAAGCTCAAATTAGCCTATCTGGGTAGGTAGGTGTTCTGAGGGACAATCAACATCAATCACCAGCCATGTGAGTGAAGAAGCCTCCAGGTTCTAAGT?CCAGCCATAAAGTCACCACCAGCTTTTGAATCTTCCCAGCTAAGGCTTAAGCAAG MEEEAELVLTEKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYFAAL|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20335 ENSG00000287721::REV1 ENSG00000287721.1::ENSG00000135945.10 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000287721 ENSG00000287721.1 lncRNA + + chr17:28204616-28223735:+ chr17:28205124:+ chr17:26531642-26550761:+ chr17:26532150:+ REV1 ENSG00000135945.10 protein_coding - - chr2:99400475-99490035:- chr2:99429945:- chr2:100016938-100106497:- chr2:100046407:- chr17:28212712,chr17:28212712,chr17:28212713,chr17:28212710 chr2:99434427,chr2:99434424,chr2:99434426,chr2:99434426 NA NA chr17:26539738,chr17:26539738,chr17:26539739,chr17:26539736 chr2:100050889,chr2:100050886,chr2:100050888,chr2:100050888 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |DNA_repair_protein_REV1_C-terminal_domain(100%),Ubiquitin_binding_region(100%),impB/mucB/samB_family(70%),impB/mucB/samB_family_C-terminal_domain(100%) |IMS(64%),IMS_C(100%),REV1_C(100%),UBM(100%) 2 0 4 20 168 ENST00000658960.1 ENST00000393445.7 downstream downstream duplicates(2) TTTATTAACACGAAATGATGTCTGCCATATACTGaTGAATGCACTTCCTAAACTGTGATTTCATATGACTTCCTGGTATTCCAGGGGAAACTCATCCAGTAAAGTTCAGCCCTTTATGAAGAATTCCCCTGTGGTCACATTCCAATTCCTGGACCTGCTGCCACCCTCAGAGCTGCATGCTCCTTCTTCAGACTTTCTAAGAATGACTCAGGTCATTGGTGGAGTGAAGCCAAGATTTCCAACTCAGTCACCTGAAGAGATGGAGATACCATTCATGGAGCTGGAGATCCCTGAAGATATGGGAATTCAGAAAACAAGCTAAGATAAGG|ATATACCAGATTCATCATTGTGGGAGAATCCAGATTCTGCGCAAGCAAATGGAATTGATTCTGTTTTGTCAAGGGCTGAAATTGCATCTTGTAGTTATGAGGCCAG___GCAACTTGGCATTAAGAACGGAATGTTTTTTGGGCATGCTAAACAACTATGTCCTAATCTTCAAGCTGTTCCATACGATTTTCATGCATATAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20339 PEX5L::STRADB ENSG00000114757.19::ENSG00000082146.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3495 TRUE 1327 PEX5L ENSG00000114757.19 protein_coding - - chr3:179794958-180037053:- chr3:179971594:- chr3:179512746-179754841:- chr3:179689382:- STRADB ENSG00000082146.13 protein_coding + + chr2:201387858-201480846:+ chr2:201454746:+ chr2:202252581-202345569:+ chr2:202319469:+ chr3:179941024 chr2:201399287 NA NA chr3:179658812 chr2:202264010 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 2 2 17 81 ENST00000467460.6 ENST00000194530.8 upstream upstream none GGGAGCCCTGAAGAAACCGAAGCAGAATGTACCAGGGACACATGCAG___AAAAGTAAAGAACAAGGATATGGAAAACTAAGCAGTGATGAAGACCTCGAAATAATTGTTGATCAAAAGCAG|TAGGATATATCTGCATCTTGAAAGGAAGATAAAACAAAAGCCTTCTTTGGAATAGATGGATTTTTGTCACTTTCTG...AATGTCTCTTTTG___GATTGCTTCTGCACTTCAAGAACACAAGTTGAATCACTCAGACCTGAAAAACAGTCTGAAACCAGTATCCATCAATACTTG___GTTGATGAGCCAACCCTTTCCTGGTCACGTCCATCCACTAGAGCCAGTGAAGTACTATGTTCC MYQGHMQKSKEQGYGKLSSDEDLEIIVDQKQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE STE20-related kinase adapter protein beta STE STE20 STLK Q9C0K7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20340 PEX5L::STRADB ENSG00000114757.19::ENSG00000082146.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3495 TRUE 1327 PEX5L ENSG00000114757.19 protein_coding - - chr3:179794958-180037053:- chr3:180036579:- chr3:179512746-179754841:- chr3:179754367:- STRADB ENSG00000082146.13 protein_coding + + chr2:201387858-201480846:+ chr2:201454746:+ chr2:202252581-202345569:+ chr2:202319469:+ chr3:179941024 chr2:201399287 NA NA chr3:179658812 chr2:202264010 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 2 1 36 81 ENST00000467460.6 ENST00000194530.8 upstream upstream mismatches(2) CGGCTCCTCGCCTTCTCTGCGCGCTCTCCCGCGTCCGCTTTCAGCACCCCGAGCGGAGAACAGTTCCCGGCAGCCCGCAGCGCTGCCGAGTGGCCGCCGGC...CTTTTCCCCTCTTTTGGTGGGCAAGTAAGCACGGGGGAAAAGCATCCGGTGGCCTCAGGGAGCCCTGAAGAAACCGAAGCAGAATGTACCAGGGACACATGCAG|TAGGATATATCTGCATCTTGAAAGGAAGATAAAACAAAAGCCTTCTTTGGAATAGATGGATTTTTGTCACTTTCT...AATGTCTCTTTTG___GATTGCTTCTGCACTTCAAGAACACAAGTTGAATCACTCAGACCTGAAAAACAGTCTGAAACCAGTATCCATCAATACTTG___GTTGATGAGCCAACCCTTTCCTGGTCACGTCCATCCACTAGAGCCAGTGAAGTACTATGTTCCACCAACGTTTCTCACTATGAGCTCCAAGTAGAAATAG___GAAGAGGATTTGACAACTTGACTTCTG MYQGHMQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE STE20-related kinase adapter protein beta STE STE20 STLK Q9C0K7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20343 MNAT1::SYT16 ENSG00000020426.11::ENSG00000139973.18 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MNAT1 ENSG00000020426.11 protein_coding + + chr14:60734742-60969965:+ chr14:60734951:+ chr14:61201460-61436683:+ chr14:61201669:+ SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:61970132:+ chr14:62278692-62579268:+ chr14:62436850:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none Zinc_finger__C3HC4_type_(RING_finger)(57%)|C2_domain(100%) zf-C3HC4_5(0%),zf-RING_UBOX(0%)|C2(100%) 1 1 2 232 2 ENST00000555545.1 ENST00000636133.1 downstream upstream duplicates(2) CTGCCAAGCGCCTGTTGGTAGGAACCTGCTTGGTCGCGTCTGAGGGGGCTTGTAGGTGGCTCTGGCTGAAACAGGCGCCTGCGAGAGTCTGTAGGAGGGA...CCGCCATGGACGATCAGGGTTGCCCTCGGTGTAAGACCACCAAATATCGGAACCCCTCCTTGAAGCTGATGGTGAATGTGTGCGGACACACTCT|TCACTCCTGAAGCCATTGGCTTCTTG...GGGTCTTTATTGTTCTTCTGGCCGTCCTCTTCCTCTTCATCAACAAGAAGCTGTGTTTTGAAACGATAGGAGGCCTTCCTTTCCTGGAGCATCGAGGGAAAAGAAAGCATTCTAAAGACAAGACTGGGATTCACAAGGGGCTGG___CTGGAAGTTTTGAGAGTGAA...GATCAAACAATTTGAGATTTCCGTGTCCCGGTCCCAGAGTTTCCGTTCAGTGACATCTGAGAAAGGAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20346 PTPRN2::SCN2A ENSG00000155093.20::ENSG00000136531.19 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRN2 ENSG00000155093.20 protein_coding - - chr7:157539056-158587823:- chr7:157898673:- chr7:157331750-158380515:- chr7:157691365:- SCN2A ENSG00000136531.19 protein_coding + + chr2:165194993-165392310:+ chr2:165342296:+ chr2:166051503-166248820:+ chr2:166198806:+ chr7:157768716,chr7:157768720 chr2:165332907,chr2:165332903 NA NA chr7:157561408,chr7:157561412 chr2:166189417,chr2:166189413 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Protein-tyrosine_phosphatase_receptor_IA-2(98%),RESP18_domain(100%)|Ion_transport_protein(65%),Sodium_ion_transport-associated(100%) RESP18(100%),Receptor_IA-2(52%)|IQ(100%),Ion_trans(48%),Na_trans_assoc(100%),PKD_channel(100%) 1 1 2 289 44 ENST00000389418.9 ENST00000375437.7 upstream upstream none CAGcGCGTTCGCTGACGTGGA___GGTTCTCGGACCAGCAGTGACCTTCAAAGTGAGCGCCAATGTCCAAAACGTGACCACTGAGGATGTGGAGAAGGCCACAG___TTGACAACAAAGACAAACTGGAGGAAACCTCTGGACTGAAAATTCTTCAAACCGGAGTCGGGTCG|GTCTTCACAGGGATCTTCACAGCAGAAATGTTTCTCAAGATAATTGCCATGGATCCATATTATTACTTTCAAGAAGGCTGGAATATTTTTGATGGTTTTATTGTGAGCC...AACTTGGTTTGGCAAATGTGGAAGGATTGTCAGTTCTCCGATCATTCCGGCTG___CTCCGAGTTTTCAAGTTGGCAAAATCTTGGCCAACTCTAAATATGCTA SAFADVEVLGPAVTFKVSANVQNVTTEDVEKATVDNKDKLEETSGLKILQTGVGS|VFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-595 chr7:158532718-158532813:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20361 NLRP1::STAT5B ENSG00000091592.17::ENSG00000173757.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NLRP1 ENSG00000091592.17 protein_coding - - chr17:5499415-5619424:- chr17:5592151:- chr17:5402735-5522744:- chr17:5495471:- STAT5B ENSG00000173757.11 protein_coding - + chr17:42199176-42288633:- chr17:42284107:+ chr17:40351194-40440651:- chr17:40436125:+ NA NA chr17:5592150,chr17:5592152 chr17:42284108,chr17:42284106 NA NA chr17:5495470,chr17:5495472 chr17:40436126,chr17:40436124 sense antisense unknown intron intron inversion/5'-5' medium none none none 7 3 18 28 11 unknown unknown upstream upstream duplicates(7) GCTTATTCTTAAAGGCTTCTGGAAGGGAATTCCACGCTAACCTCCCCTATCTCATTCCTACAACTTAGCATCCCTCACTGGGCAGAAGTCCTACCCCAGGGCTAATCCTAGTTCCTCCTGCTGCACTTAAAGCCCCCTTGCTTTGATTGTCATCCATGGAGCTGGATGTTCTCAGCGGCCATCATCTGACCTCTGTATTTTCTAGCTCAGAAGCCTCCATAGGGAGGGGTAGGCAACAATCCACTTGAGGTACAGATACGTTCTGAGAGGC|GGAAACAAAGGCATCTCTGTACCACCTCCCTCCACCCCCCAAGGAAGGTCAAGTCAAGGTGACCTCAATCTGTTCTCCCCAGGGTAGGGGCATGGGCAGACCTGATCGTCAAGGGCAAGGCAGAAAGGGGACCTGGGATAATTCTTTCTCTCTCCCTCTTTTTTTTTTTTTCTTTTTGTGACGGAGTTTCGCTTTTGTTGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20362 TMEM260::RAB1B ENSG00000070269.14::ENSG00000174903.16 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1905 FALSE NA FALSE NA TMEM260 ENSG00000070269.14 protein_coding + + chr14:56488354-56650606:+ chr14:56636598:+ chr14:56955072-57117324:+ chr14:57103316:+ RAB1B ENSG00000174903.16 protein_coding + + chr11:66268590-66277492:+ chr11:66271797:+ chr11:66036061-66044963:+ chr11:66039268:+ chr14:56639456 chr11:66269228 NA NA chr14:57106174 chr11:66036699 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Protein_of_unknown_function_(DUF2723)(100%)|Ras_family(100%) DUF2723(100%)|Arf(100%),Gtr1_RagA(100%),MMR_HSR1(100%),Ras(100%),Roc(100%),SRPRB(100%) 4 9 5 123 3382 ENST00000261556.11 ENST00000311481.11 downstream upstream duplicates(5),mismatches(1) CATTTAATCTTTATCATTTTCTTGAAGTAAATAAACA___AAAAGAAACATTTGTTTGCATAGGAATTCATGAAGGCGACCCAACCTGGAAAAAGAACTATTCAC...ATTAAACTTACAAAAAaTATCTATAACTGGACCGAAGAATATGGAAG___GTTTGATCCATCTTCTTGGGAATCTGTGGCCAATGAAGAAATGTGGCAAGCGAG___GATGAAAACACCGTTCTTCATCTTTAACCTGGCAGAAACTGCTCACATGCCTTCAAAAGTGAAAGCTCAACTCTACGCTCAAGCATATGAC|TGACTACCTGTTTAAGCTGCTTTTGATTGGCGACTCAGGCGTGGGCAAGTCATGCCTGCTCCTGCGGTTTGCT___GATGACACGTACACAGAGAGCTACATCAGCACCATCGGGGTGGACTTCAAGATCCGAACCATCGAGCTGGATGGCAAAACTATCAAACTTCAGATC___TGGGACACAGCGGGCCAGGAACGGTTCCGGACCATCACTTCCAGCTACTACCG...GGGCTCATGGCATCATCGTGGTGTATGACGTCACTGACCAG IKLTKnIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAHMPSKVKAQLYAQAYD|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20374 NEGR1::ZRANB2-DT ENSG00000172260.15::ENSG00000229956.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:71592817:- chr1:71861626-72748222:- chr1:72058500:- ZRANB2-DT ENSG00000229956.11 lncRNA + - chr1:71081324-71489976:+ chr1:71288431:- chr1:71547007-71955659:+ chr1:71754114:- chr1:71461069 chr1:71293057 NA NA chr1:71926752 chr1:71758740 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),V-set(100%),ig(100%)| 2 1 5 125 15 ENST00000357731.10 unknown upstream downstream mismappers(2) TATGAATGCAGTGCGGAAAATGATGTGTCATTCCCAGATGTGAGGAAAGTAAAAGTTGTTGTCAACT___TTGCTCCTACTATTCAGGAAATTAAATCTGGCACCGTGACCCCCGGA...AAGGAATTATTATTCAAAATTTTAGCACAAGATCCATTCTCACTGTTACCAACGTGACACAGGAGCACTTCGGCAATTATACtTGTGTGGCTGCCAACAAGCTAGGCACAACCAATGCGAGCCTGCCTCTTAACC|ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGAGTGGTGGCGCCATCTTCGCTCACTGCCACCTCTGTCTCCCAGGTTCAAGAGATTCTCCTGTCTCAGCCTCCCAAGTAGCTGGAATTACAG___GCTCCAATTCTTC...___ATTTAGAAGAATGGATAAGAAGTTGCTTTTTATGGATGAGTAAAGAAACTGTCCTTTTGAGAT GIIIQNFSTRSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLN|hgvslchpgwsewwrhlrslpplsprfkrfsclslpsswnyrlqf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20382 ENSG00000235726::LRPPRC ENSG00000235726.7::ENSG00000138095.20 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3498 TRUE 1328 ENSG00000235726 ENSG00000235726.7 lncRNA - - chr2:234803808-234913384:- chr2:234817234:- chr2:235712452-235822028:- chr2:235725878:- LRPPRC ENSG00000138095.20 protein_coding - - chr2:43886224-43996226:- chr2:43899605:- chr2:44113363-44223365:- chr2:44126744:- chr2:234813672,chr2:234813676 chr2:43901313,chr2:43901314 NA NA chr2:235722316,chr2:235722320 chr2:44128452,chr2:44128453 NA NA sense sense unknown intron CDS/splice-site deletion medium none |PPR_repeat(33%) |PPR(27%) 1 1 1 6 962 ENST00000669419.1 ENST00000260665.12 upstream downstream none AGAACAGCATGCAGCCTGGCACTTAGCAAGTGATCGAGAAATAATTCATGAGTGAATGAATGAACAGATGACAGATGTAACCAAAAATCAAAACTAAAATCACTTCTGAAGTCGAGGATGCACTTCTCg___ATGGTGTGAACTTTAAAAGGTCAAAAAGTAAATATGTCCT...CCGATCCAGAAAAAAATATAAAGAAGAAAAGAAAACAGCCAGAAATCTCAGCAACTGGTAAAAAT|TAATAACATAGATGCCGCAATAGAAAACATTGAAAATATGCTTACTTCAGAGAATAAAGTCATTGAACCCCAATACTTCGGCTTGGCATACTTATTCAGAAAAGTAATAGAGGAGCAGTTGGAACCAG...TAAGCATCATGGCGGAGAGATTGGCCAATCAGTTTGCAATTTATAAACCTGTCACTGATTTTTTCCTTCAACTTGTGGATGCAGGCAAGGTGGATGATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20383 ENSG00000235726::LRPPRC ENSG00000235726.7::ENSG00000138095.20 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3498 TRUE 1328 ENSG00000235726 ENSG00000235726.7 lncRNA - - chr2:234803808-234913384:- chr2:234817242:- chr2:235712452-235822028:- chr2:235725886:- LRPPRC ENSG00000138095.20 protein_coding - - chr2:43886224-43996226:- chr2:43899605:- chr2:44113363-44223365:- chr2:44126744:- chr2:234813672,chr2:234813676 chr2:43901313,chr2:43901314 NA NA chr2:235722316,chr2:235722320 chr2:44128452,chr2:44128453 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |PPR_repeat(33%) |PPR(27%) 0 1 1 6 962 ENST00000669419.1 ENST00000260665.12 upstream downstream none TGACAGATGTAACCAAAAATCAAAACTAAAATCACTTCTGAAGTCGAGGATGCACTTCTCg___ATGGTGTGAACTTTAAAAGGTCAAAAAGTAAATATGTCCT...CATGTTTCTTGTGAGGAATATTGGCCGATCCAGAAAAAAATATAAAGAAGAAAAGAAAACAGCCAGAAATCTCAGCAACTG|TAATAACATAGATGCCGCAA...CATTGAAAATATGCTTACTTCAGAGAATAAAGTCATTGAACCCCAATACTTCGGCTTGGCATACTTATTCAGAAAAGTAATAGAGGAGCAGTTGGAACCAG...TTGGCCAATCAGTTTGCAATTTATAAACCTGTCACTGATTTTTTCCTTCAACTTGTGGATGCAGGCAAGGTGGATGATGCCAGAGCTCTCCTACAG___AGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20412 WDR5B-DT::KPNA1 ENSG00000272758.7::ENSG00000114030.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WDR5B-DT ENSG00000272758.7 lncRNA + + chr3:122416200-122443180:+ chr3:122432842:+ chr3:122135047-122162027:+ chr3:122151689:+ KPNA1 ENSG00000114030.13 protein_coding - + chr3:122421902-122514945:- chr3:122432074:+ chr3:122140749-122233792:- chr3:122150921:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron duplication/5'-5' low none none none 1 1 1 6 10 ENST00000608346.1 unknown downstream upstream none TGAAATACTAGATGTCCTGAATTTTGCATTTAATTATATGATGCTCCTTTGAAGAACTGATTCCCATCCATATTTATGTTTTCTTCCACTCATTAAGCTTATAAGCTGCTCGTCGGGCATGATGGCTCACACCTGTAATTCCAGCACTCTGGGA|TTACAGACATGAGCCGCTGCACCCGGCCTGGCTTATTTCAATTAAGAAAATATATTTGCTATAAAATATAGAGACAATTAATAACTATAAATGTGAATTTGAACATAAAGCTTATTCAAATAACTATAGTACTTCATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20426 NOTCH3::ENSG00000286229 ENSG00000074181.9::ENSG00000286229.1 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOTCH3 ENSG00000074181.9 protein_coding - - chr19:15159038-15200995:- chr19:15180681:- chr19:15269849-15311806:- chr19:15291492:- ENSG00000286229 ENSG00000286229.1 lncRNA + - chr20:54232758-54269542:+ chr20:54257489:- chr20:52849297-52886081:+ chr20:52874028:- chr19:15180336,chr19:15180327 chr20:54258883,chr20:54258883 NA NA chr19:15291147,chr19:15291138 chr20:52875422,chr20:52875422 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Calcium-binding_EGF_domain(100%),EGF-like_domain(74%),Human_growth_factor-like_EGF(100%)| EGF(93%),EGF_CA(95%),hEGF(86%)| 264 281 300 1516 839 ENST00000263388.7 unknown upstream downstream duplicates(134),mismatches(57) GCTGCCTGTGCCGTCCCGGCTACACAGGAGCCCACTGCCAACATGAGGCAGACCCCTGCCTCTCGCGGCCCTGCCTACACGGGGGCGTCTGCAGCGCCGCCCACCCTGGCTTCCGCTGCACCTGCCTCGAGAGCTTCACGGGCCCGCAGTGCCAG___ACGCTGGTGGATTGGTGCAGCCGCCAGCCTTGTCAAAACGGGGGTCGCTGCGTCCAGACTGGGGCCTATTGCCTTTGTCCCCCTGGATGGAGCGGACGCCTCTGTGACATCCGAAGCTTGCCCTGCAGGGAGGCCGCAGCCCAGATCG|GTAGATACTCCTGACCATCACAGAGATGCTTACAGCATCCACAAATTGCAATTGTGAACTCCTGCTGAGAATGACCAGGTCTGGGTTCAACGTCTTTGCCTCCTTTTCTACACATTGCATAAGGTTCCCCTCCAACACATCTCCCATTAGCATGGATTGCAAAAGCTTCAGGCAGCAGTGAGTCAACCATAGCTGCACCTGGGGAACAGAGAAAAAAAAATACCACTGCCCTGACCCCATTCCAAAAGGACTGAATCAGACTCTCTAATCAGGGGCTTGGCTAATA CLCRPGYTGAHCQHEADPCLSRPCLHGGVCSAAHPGFRCTCLESFTGPQCQTLVDWCSRQPCQNGGRCVQTGAYCLCPPGWSGRLCDIRSLPCREAAAQI|grys* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20427 PTPRK::SCN11A ENSG00000152894.15::ENSG00000168356.13 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRK ENSG00000152894.15 protein_coding - - chr6:127968785-128520616:- chr6:128184432:- chr6:128289930-128841761:- chr6:128505577:- SCN11A ENSG00000168356.13 protein_coding - - chr3:38845764-39052157:- chr3:39032503:- chr3:38887255-39093648:- chr3:39073994:- chr6:128132136,chr6:128132138 chr3:39034675,chr3:39034674 NA NA chr6:128453281,chr6:128453283 chr3:39076166,chr3:39076165 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Fibronectin_type_III_domain(49%),Immunoglobulin_I-set_domain(100%),MAM_domain__meprin/A5/mu(100%)|Ion_transport_protein(100%),Sodium_ion_transport-associated(100%) I-set(100%),MAM(100%),fn3(18%)|Ion_trans(100%),Na_trans_assoc(100%) 110 217 229 441 1275 ENST00000368226.9 ENST00000302328.9 upstream downstream duplicates(125),low_entropy(1),mismappers(137),mismatches(83) CATTGCTCCTCCTCAGCTTCTTGGTGTTGGGCCTACATATTTGCTGATCCAACTAAATGCCAACTCGATCATTGGCGATGGTCCTATCATCCTGAAAGAAGTAGAGTACCGAATGACATCAGGATCCTGGACAGAAACCCATGCAGTCAATGCTCCAACTTACAAATTATGGCATTTAGATCCAGATACCGAATATGAGATCCGAGTTCTACTTACAAGACCTGGTGAAGGTGGAACGGGGCTCCCAGGACCTCCACTAATCACCAGAACAAAATGTGCAG|ATTGTCCCAGTGCTTCGCATGTTTTTGGCTCCATGTTCAATCCATTTGCTGAACACAGTGAAAGTATCCAGTATGTCTTTCCACCGTACCCTAGAGTTGGCATCTTGTTTACCAGAGGGGAGCG___AATCTCACTCTGTCACCCAGGCTGGAGTGCACTGGTGCAATCTTGGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCCTCAGCCTCCCAAGTAACTGGGATTA IAPPQLLGVGPTYLLIQLNANSIIGDGPIILKEVEYRMTSGSWTETHAVNAPTYKLWHLDPDTEYEIRVLLTRPGEGGTGLPGPPLITRTKCA|dcpsashvfgsmfnpfaehsesiqyvfppyprvgilftrgerislchpgwsalvqswliatstsqvqaillpqppk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, receptor type, K 1 colorectal epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20428 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87682734:- chr3:87690562-87842779:- chr3:87731884:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ephrin_receptor_ligand_binding_domain(12%)| Ephrin_lbd(0%)| 6 33 107 143 70 ENST00000336596.7 ENST00000462792.2 downstream downstream duplicates(34),mismappers(23),mismatches(6) TCATGGAGATATGCTCCTCTCACTGCCCTCTGCACCAGCAACATGGATTGTCAGCTCTCCATCCTCCTCCTTCTCAGCTGCTCTGTTCTCGACAGCTTCGGGGAACTGATTCCGCAGCCTTCCAATGAAG___TCAATCTACTGGATTCAAAAACAATTCAAGGGGAGCTGGGCTGGATCTCTTATCCATCACATGGG|ATGGAGTTTCGCTCTTATTGCCCAAGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTTGAGCGACTCTCCTGCCACAGCCTCCAGAGTAGCTGGGATTACAGTCATGTGTCACCACGTCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCAGGTGATCCGCTGGCCTCGGCCTCCCAAAGTGCTGGGGTTACAGGGTGCACAGCGGGCCAGCCTAAAACGACCTTTTTAAAGCAATTGAAAG MDCQLSILLLLSCSVLDSFGELIPQPSNEVNLLDSKTIQGELGWISYPSHG|mefrsycpswsama* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20429 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87644502:- chr3:87690562-87842779:- chr3:87693652:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ephrin_receptor_ligand_binding_domain(12%)| Ephrin_lbd(0%)| 22 29 50 143 165 ENST00000336596.7 ENST00000462792.2 downstream downstream duplicates(16),mismatches(1) CAGAGCGCTCCCCCTCACATCAGTGGCATGCTTCATGGAGATATGCTCCTCTCACTGCCCTCTGCACCAGCAACATGGATTGTCAGCTCTCCATCCTCCTCCTTCTCAGCTGCTCTGTTCTCGACAGCTTCGGGGAACTGATTCCGCAGCCTTCCAATGAAG___TCAATCTACTGGATTCAAAAACAATTCAAGGGGAGCTGGGCTGGATCTCTTATCCATCACATGGG|GATGTGATTCCAATAAATAAACCAGGGCACCTGCTGGTTCTCAATACATACTTGAGATCCTAACAACTTGGAAGAAGAAACAAAAATGTCTTCAAAGGAACAAGAATTTGGCATTTCATTGACAACTCTGGAACACGGAATACAACAAGACATGTCTTCAGAATTCTTAGATGTATTTTCAACTTTGAATTCTATACTGAAACTATGAACCCTGAGGGCAGAAAAAGTATTCAAGAACTCAGGAAGTATCTCCAAAAACCCACACAGAATATTACTCAAAGA MDCQLSILLLLSCSVLDSFGELIPQPSNEVNLLDSKTIQGELGWISYPSHG|dvipinkpghllvlntylrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20430 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87680379:- chr3:87690562-87842779:- chr3:87729529:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ephrin_receptor_ligand_binding_domain(12%)| Ephrin_lbd(0%)| 4 3 60 143 66 ENST00000336596.7 ENST00000462792.2 downstream downstream duplicates(12),mismatches(1) ACCAGCAACATGGATTGTCAGCTCTCCATCCTCCTCCTTCTCAGCTGCTCTGTTCTCGACAGCTTCGGGGAACTGATTCCGCAGCCTTCCAATGAAG___TCAATCTACTGGATTCAAAAACAATTCAAGGGGAGCTGGGCTGGATCTCTTATCCATCACATGGG|GTGGCGTGTCTGGAGTCTGTCCCTTCTGATGTTCACATGTGTACGGAGTTTCTTTCTTCTGGTGGGTTCGTGGTCTCGCTGGCTCAGGAGTGAAGCTGCAGACCTTCGCG___GATGTGATTCCAATAAATAAACCAGGGCACCTGCTGGTTCTCAATACATACTTGAGATCCTAACAACTTGGAAGAAGAAACAAAAATGTCTTCAAAGGAACAAGAATT...CTTCAGAATTCTTAGATGTATTTTCAACTTTGAATTCTATACTGAAACTATGAACCCTGAGGGCAGAAAAAGTATTCAAGAACTCAGGAAGTATCTCCAAA MDCQLSILLLLSCSVLDSFGELIPQPSNEVNLLDSKTIQGELGWISYPSHG|vaclesvpsdvhmcteflssggfvvslaqe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20431 ZFAND3::C6orf89 ENSG00000156639.12::ENSG00000198663.17 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1906 TRUE 3503 TRUE 1330 ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:37929999:+ chr6:37787503-38122400:+ chr6:37897775:+ C6orf89 ENSG00000198663.17 protein_coding + + chr6:36871870-36928964:+ chr6:36914284:+ chr6:36839646-36896740:+ chr6:36882060:+ chr6:38039463,chr6:38039458 chr6:36908905,chr6:36908897 NA NA chr6:38007239,chr6:38007234 chr6:36876681,chr6:36876673 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none A20-like_zinc_finger(100%)| zf-A20(100%)| 3 30 42 703 551 ENST00000287218.9 ENST00000359359.6 downstream upstream duplicates(14),mismatches(5) CGCCGAGCTCCGCCGCCGCCGAGCACCATGGGAGACGCTGGGAGCGAGCGCAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG___GTCCAGCAAGACTATGAATCTCTGTTCCAAATGCTTTGCTG|ACTTTGACCCCTGGTGGACAAACGACTGTGAGCAGAATGAGTCAGAGCCCATTCCTGCCAACTGCACTGGCTGTGCCCAGAAACACCTGAAGGTGATGCTCCTGGAAGACGCCCCAAGGAAATTTGAGAGGCTCCATCCACTGGTGATCAAG___ACGGGAAAGCCCCTGTTGGAGGAAGAGATTCAGCATTTTTTGTGCCAGTACCCTGAGGCGACAGAAGGCTTCTCTGAAG MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFA|dFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 37787792|37787792 FALSE|FALSE 36869997|36870056 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20432 ZFAND3::C6orf89 ENSG00000156639.12::ENSG00000198663.17 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3503 TRUE 1330 ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:37820016:+ chr6:37787503-38122400:+ chr6:37787792:+ C6orf89 ENSG00000198663.17 protein_coding + + chr6:36871870-36928964:+ chr6:36914284:+ chr6:36839646-36896740:+ chr6:36882060:+ chr6:38039463,chr6:38039458 chr6:36908905,chr6:36908897 NA NA chr6:38007239,chr6:38007234 chr6:36876681,chr6:36876673 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none A20-like_zinc_finger(31%)| zf-A20(0%)| 1 4 13 594 551 ENST00000287218.9 ENST00000359359.6 downstream upstream duplicates(6),mismatches(3) CCCAGCCGCCGCCACCGCTGCCGCCGCCGAGCTCCGCCGCCGCCGAGCACCATGGGAGACGCTGGGAGCGAGCGCAGCAAAGCGCCCAGCCTGCCGCCTCGCTGTCCCTGCGGCTTCTGGGG|ACTTTGACCCCTGGTGGACAAACGACTGTGAGCAGAATGAGTCAGAGCCCATTCCTGCCAACTGCACTGGCTGTGCCCAGAAACACCTGAAGGTGATGCTCCTGGAAGACGCCCCAAGGAAATTTGAGAGGCTCCATCCACTGGTGATCAAG___ACGGGAAAGCCCCTGTTGGAGGAAGAGATTCAGCATTTTTTGTGCCAGTACCCTGAGGCGACAGAAGGCTTCTCTGAAGGGTTTTTCGCCAAGTGGTGGCGCTGCTTTCCTGAGCGGTGGTTCCCATTTCCTTATCCATG___GAGGAGACCTCTGAAC...AAAgCCAGGTTGAAAGGGGAAAAATAAAAACAAAAACGATGAAACTGCTTTCTGGGGGTTGGTTACTTAGTTACCTGCCCTTTGCATGCATGTGTGAAC MGDAGSERSKAPSLPPRCPCGFWg|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 37787792|37787792 TRUE|TRUE 36869997|36870056 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20433 CCDC26::ROBO1 ENSG00000229140.12::ENSG00000169855.21 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CCDC26 ENSG00000229140.12 lncRNA - + chr8:128634199-129683770:- chr8:128877559:+ chr8:129646445-130696016:- chr8:129889805:+ ROBO1 ENSG00000169855.21 protein_coding - - chr3:78597239-79767998:- chr3:78647655:- chr3:78646389-79817148:- chr3:78696805:- NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none none none 7 10 44 54 397 unknown ENST00000464233.6 downstream downstream duplicates(12),mismappers(2),mismatches(11) TCCAGATAGAGCCTGGACGTTTAAATGAAGACATGGAGCACAGCTGCCATCAACCCATAGTGAAAAAACAGAGACTTTGAGCTTTGAG___CATCTACAGCAATGACAGGCTAAAGAAGAAAAGAACAAGGAGGAGGAGAAGAAGAAGGAGAAGGAGGAGGAGAAGAAAGAAGAGGAGGTGGAGAGGAAG|TCCCGTCTTTTACCTTCACACCAACAG___TAACTTACCAGAGAGGAGGCGAAGCTGTCAGCAGTGGAGGGAG___GCCTGGACTTCTCAACATCAGTGAACCTGCCGCGCAGCCATGGCTGGCAGACACGTGGCCTAATACTGGCAACAACCACAATGACTGCTCCATCAGCTGCTGCACGGCAGGCAATGGAAACAGCGACAGCAACCTCACTACCTACAGTCGCCCAG___CTGATTGTATAGCAAATTATAACAACCAACTGGATAACAAACAAACAAATCTGATGCTCCCTGAGTCAACTGTTTATGGTGATGTGGACCTTAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20435 RC3H1::RABGAP1L ENSG00000135870.12::ENSG00000152061.24 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RC3H1 ENSG00000135870.12 protein_coding - - chr1:173931084-174022357:- chr1:173992755:- chr1:173900222-173991495:- chr1:173961893:- RABGAP1L ENSG00000152061.24 protein_coding + - chr1:174159410-174995308:+ chr1:174383838:- chr1:174128548-174964445:+ chr1:174352976:- chr1:173987605,chr1:173987606,chr1:173987607,chr1:173987609 chr1:174385237,chr1:174385237,chr1:174385236,chr1:174385236 NA NA chr1:173956743,chr1:173956744,chr1:173956745,chr1:173956747 chr1:174354375,chr1:174354375,chr1:174354374,chr1:174354374 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RING-type_zinc-finger(100%)| zf-RING_UBOX(100%)| 7 12 21 102 43 ENST00000367696.7 unknown upstream downstream duplicates(9),mismatches(2),multimappers(1) TCTTTGCTTTAGATTTGTGTGTGTGTTTGTGTTCGTGAATTGTAACTCCAGAAGCAATGCCTGTACAAGCTCCACAATGGACGGATTTCCTCTCCTGCCCAATTTGCACTCAGACTTTCGACGAAACAATTCGAAAGCCCATCAGTTTGGGTTGTGGCCATACTGTCTGCAAGATGTGCCTGAATAAACTCCACCGCAAGGCTTGCCCATTTGACCAGACCACTATCAATACAGACATTGAGCTCCTCCCTGTGAACTCAGCATTGCTGCAGCTCGTGGGTGCTCAG|CAACATATGAGAGTTGCAGTTGCGAGGAGGAGCCAAGATGGCCGAATAGGAACAGCTCCGGTCTACAGCTCCCAGCATGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCATCTGAGGTACCGGGTTCATCTCACTAGGGAGTGCCAGACAGTGGGTGCAGGCCAGTGGGTGCGCGC?CCGTGCGCGAGCCGAAGCAGGGC...GGAAGCGCAAGGGGTCAGGGAGTTCCCTTTCCCAGTCAAAGAAAG MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSALLQLVGAQ|qhmrvavarrsqdgrigtapvyssqherrrrrvisafpsevpgssh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20436 FTX::UPRT ENSG00000230590.13::ENSG00000094841.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FTX ENSG00000230590.13 lncRNA - - chrX:73940435-74293574:- chrX:74274342:- chrX:73160270-73513409:- chrX:73494177:- UPRT ENSG00000094841.14 protein_coding + - chrX:75156388-75304885:+ chrX:75225565:- chrX:74376223-74524720:+ chrX:74445400:- chrX:74253407 chrX:75251309 NA NA chrX:73473242 chrX:74471144 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 8 6 17 92 70 ENST00000603672.5 unknown upstream downstream duplicates(4) CTTG___ATTCCTGGATGGCCAGAAAACTTGTCATTGGTCAAGAGCAACATTAAGATCTGCCTGTTACTCATACTGATGCTTCCTGCCCAGCAAGTTCATCAGAGGGCGAGGATGAATTACGGTTGCCATGAATGTCCTTGTGAGGCAGTTGGGAAGCCTTG___GCTGGATTGTGAAGGATATTTGAAAAGTATTTTAGAGTCCACCAGATCATCCATGTGAGTGACCATGCAGCAAAAGAAGGAGGGTCCTCTCAGTGATTAAG___GATTATGAAGTATTAATTCTTCCACTGATATCTCAAAAGGTGATCTGGACAAAGGAACAGGTATCTCAG|ATCAGCAAGGTAGAAACTTCACTCCAGGCTACAGCAGCCAAGAATATAGGACTGCCTCTCCCCCAACTGGAAGCATTATTCTCAGGAGGAGTAAAACTGCATTTCTCATTCTGCCCCCAGCTACTGGTTGCTGAGGCTGTTCCAG___CACCACAACCCACGAGTAGACTTCAGAGAATTATCCAGCCATTCTTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-545,hsa-mir-374a chrX:74287104-74287209:-,chrX:74287286-74287357:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20437 EIF2S3::KLHL15 ENSG00000130741.11::ENSG00000174010.10 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF2S3 ENSG00000130741.11 protein_coding + + chrX:24054946-24078810:+ chrX:24060182:+ chrX:24073063-24096927:+ chrX:24078299:+ KLHL15 ENSG00000174010.10 protein_coding - + chrX:23983716-24027186:- chrX:24006307:+ chrX:24001833-24045303:- chrX:24024424:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Elongation_factor_Tu_GTP_binding_domain(58%)| GTP_EFTU(52%)| 9 8 14 2753 194 ENST00000253039.9 unknown downstream upstream duplicates(8),mismatches(3) TACAATTGGTCATGTAGCTCATGGGAAATCCACAGTCGTCAAAGCTATTTCTGGAGTTCATACTGTCAGGTTCAAAAATGAACTAGAAAGAAATATTACAATCAAGCTTGGATATGCTAATGCTAAG___ATTTATAAGCTTGATGACCCAAGTTGCCCTCGGtCAGAATGTTATAGATCTTGTGGGAGCAGTACACCTGACGAGTTTCCTACGGACATTCCAGGGACCAAAGGGAACTTCAAATTAGTCAG___ACATGTTTCCTTTGTTGACTGTCCTGGCCACGATATTTTGATGGCTACTATGCTGAACGGTGCAGCAGTGATGGATGCAGCTCTTCTGTTGATAG|GCAGATCTTCGCTAAGAGAAAAGAGCAGCAGAACTTCACCACTTCTATAAGTTGAACATACATGGCAGCCTGAAGAATCTCATGAACGGTATTCATACTCAGCTCTATAGTTCCATAGTACATAAATTGCAGGACATGGCTGAAACCGGTAGCTGTTAGACCTTTTAAATGAATTTTGTCCTGATCTCGTTCCCTCATGTCTGCAGTAAACATAATTCTGAAGTAATCACTCTGGGTGGCCA TIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDPSCPRsECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI|grsslrekssrtspll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20439 JPH3::KLHDC4 ENSG00000154118.13::ENSG00000104731.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA JPH3 ENSG00000154118.13 protein_coding + + chr16:87601835-87698156:+ chr16:87645035:+ chr16:87635441-87731762:+ chr16:87678641:+ KLHDC4 ENSG00000104731.14 protein_coding - + chr16:87696485-87765992:- chr16:87738211:+ chr16:87730091-87799598:- chr16:87771817:+ chr16:87683779,chr16:87695154,chr16:87695271,chr16:87683780,chr16:87695269 chr16:87734618,chr16:87735595,chr16:87735595,chr16:87734616,chr16:87735590 NA NA chr16:87717385,chr16:87728760,chr16:87728877,chr16:87717386,chr16:87728875 chr16:87768224,chr16:87769201,chr16:87769201,chr16:87768222,chr16:87769196 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none MORN_repeat(100%)| MORN(100%)| 7 8 11 166 31 ENST00000284262.3 unknown downstream upstream duplicates(2) AAACGCTCCGGCTTCGGCGTGAGCCAGCGCTCGGACGGGCTCAAGTACGAGGGCGAGTGGGCCAGCAACCGGCGtCATGGCTACGGCTGCATGACCTTCCCGGACGGCACCAAGGAGGAGGGCAAGTACAAGCAGAACATCCTCGTCGGCGGCAAGCGCAAGAACCTCATCCCCCTGCGGGCCAGCAAGATCCGCGAGAAGGTGGACCGCGCCGTTGAGGCCGCTGAGCGGGCCGCCACCATCGCCAAGCAGAAGGCTGAGATCGCGGCTTCCAG|AATCGTAAAGTAACGGAATCATCCTGCCGAGGAGCCTTCTCCAGGAAACTGACTTTCACTCAGATGCAGCTTTAGCTGAGGACCAAATGAGGACCCTTCCTCACATCAGGAGAAAACAGTGCGTATGCCTGCGCACACACGGACGTGCACACACACACACACACACACATCTATATCTTCATCCAACCAAACAGTACCGATCATCTCCCAAGTGCTCCGGTGCATACAAAGATGTATGCACTGTCCGTGAACTTTCACAGCAACACTGCAAGAGCAGAAAAGTGGAAACAAC KRSGFGVSQRSDGLKYEGEWASNRRHGYGCMTFPDGTKEEGKYKQNILVGGKRKNLIPLRASKIREKVDRAVEAAERAATIAKQKAEIAASr|ivk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20440 ENSG00000229618::SCIN ENSG00000229618.3::ENSG00000006747.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1908 FALSE NA FALSE NA ENSG00000229618 ENSG00000229618.3 lncRNA + + chr7:12726152-13751920:+ chr7:13217668:+ chr7:12765777-13791545:+ chr7:13257293:+ SCIN ENSG00000006747.15 protein_coding + + chr7:12570577-12660182:+ chr7:12622801:+ chr7:12610203-12699807:+ chr7:12662426:+ chr7:13306256,chr7:13306255 chr7:12622205,chr7:12622201 NA NA chr7:13345881,chr7:13345880 chr7:12661830,chr7:12661826 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Gelsolin_repeat(65%) |Gelsolin(28%) 7 2 12 17 19 ENST00000639998.1 ENST00000297029.10 downstream upstream duplicates(6) AGGGAGCACAG...___ACATGGATTCTCACTATGACAtCCAGGCTGGAGTGCAGTGGCACAATCATAGCTGACTACAGCCTCGAATTTCTGGGCTCAAGCAAGGCTTTCATCTCAACCTCCCCAGGAGCTGGGATTACAG|GTCTTAGGGGAAAAGCCAGAGCTTCCAGATGGAGGTGATGATGATGACATTATAGCAGACATAAGTAACAGGAAAATGGCTAAACTATACATG___GTTTCAGATGCAAGTGGCTCCATGAGAGTGACTGTGGTGGCAGAAGAAAACCCCTTCTCAATGGCAATGCTGCTGTCTGAAGAATGCTTTATTTTGG...GGAAAG___GTAAAGATGCTAATCCCCAAGAGAGGAAGGCTGCAATGAAGACAGCTGAAGAATTTCTACAGCAAATGAATTATTCCAAGAATACCCAA___ATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20441 FAM13B::SIL1 ENSG00000031003.11::ENSG00000120725.13 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1909 FALSE NA FALSE NA FAM13B ENSG00000031003.11 protein_coding - - chr5:137937960-138051961:- chr5:138032782:- chr5:137273649-137387650:- chr5:137368471:- SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139127853:- chr5:138282413-138629246:- chr5:138463542:- chr5:138029413 chr5:139243924 NA NA chr5:137365102 chr5:138579613 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 2 5 10 160 520 ENST00000689681.1 ENST00000505830.5 upstream downstream duplicates(6) CTCTCCTCCCGCTCGCCGTTAGGGAGGCTCTGCACCTCAGCCGCCGCCTCTGTCGCCACTCTCTCCCCCTGTTCCGCGTCTGCGTCGCCACCACCGCCGGGGGTATCCGGGGGGTCGCTTACCGGGCTGGCCCCGCGCCACAGCCGTAGCTTTAACCTCCCGTCAGCGGCCGCCCCAGGAAGAGGCTTCTCGGCCGCGGAGCCACTTGGGGCCTCAGTTCTCGCCCTCTTGCCGTCGCCGCGGGTCCTGGAGAAGCGGCCGCGGCCAGGGAACGGGGCATCGCGGTTCCAACG|GTCCCTGACTATGGCTCCCCAGAGCCTGCCTTCATCTAGGATGGCTCCTCTGGGCATGCTGCTTGGGCTGCTGATGGCCGCCTGCTTCACCTTCTGCCTCAGTCATCAGAACCTG___AAGGAGTTTGCCCTGACCAACCCAGAGAAGAGCAGCACCAAAGAAACgGAGAGAAAAGAAACCAAAGCCGAGGAGGAGCTGGATGCCGAAGTCCTGGAGGTGTTaCACCCGACGCATGAGTGGCAGGCCCTTCAGCCAG___GGCAGGCTGTCCCTGCAGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20443 BOK::FARP2 ENSG00000176720.6::ENSG00000006607.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BOK ENSG00000176720.6 protein_coding + + chr2:241551424-241574131:+ chr2:241572585:+ chr2:242490839-242513546:+ chr2:242512000:+ FARP2 ENSG00000006607.14 protein_coding + + chr2:241356285-241494841:+ chr2:241475857:+ chr2:242295700-242434256:+ chr2:242415272:+ chr2:241572872,chr2:241573034,chr2:241572873 chr2:241473786,chr2:241473786,chr2:241473781 NA NA chr2:242512287,chr2:242512449,chr2:242512288 chr2:242413201,chr2:242413201,chr2:242413196 NA NA sense sense stop-codon 3'UTR CDS/splice-site duplication high none Apoptosis_regulator_proteins__Bcl-2_family(100%)|PH_domain(100%),RhoGEF_domain(6%) Bcl-2(100%)|PH(100%),RhoGEF(0%) 2 3 8 267 30 ENST00000318407.5 ENST00000264042.8 downstream upstream low_entropy(1) AGACTGATGTCCTCAAGTGTGTGGTCAGCACAGACCCTGGCCTCCGCTCCCACTGGCTGGTGGCTGCACTCTGCAGCTTCGGCCGCTTCCTGAAGGCTGCCTTCTTCGTGCTGCTGCCAGAGAGATGAGCTGCCCACCTGGCAGTGGCCGCAGCCTGGCCCTCTGGGCCCAACGCAGGAGGCCCTCAGCACCCGAACACATCTTCCTCCTCCCCACCCGAGCCTGGAGCACTCTAACCCTCGGAGACCCCCTAAGCCCCGTTCCTCCGCAGACCCAGGCCCTCCGGAAGGG|ACGCCCTGAAAGCCATCACAGAGGTGACCACCACACTACAGCACATTCTCATCCGGCTGGAGAACCTGCAGAAGCTAACGGAGCTGCAGCGGGACCTGGTGGGCATAGAGAACCTCATTGCTCCTGGCAGG___GAGTTCATCCGTGAGGGCTGCCTTCACAAGCTCACCAAGAAGGGCCTGCAGCAGAGGATGTTTTTTCTG___TTCTCAGATATGTTGCTGTACACtAGC...TTCCGGATCCGGGGCCaCCTTCCCCTCCAAGGCATGCTG___GTGGAAGAAAGTGATAACGAGTGGTCTGTTCCACACTGTTTCACCATCTACGCGGCcCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3133 chr2:241477905-241477982:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20446 HS1BP3::LDAH ENSG00000118960.13::ENSG00000118961.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1911 FALSE NA FALSE NA HS1BP3 ENSG00000118960.13 protein_coding - - chr2:20560448-20651130:- chr2:20623896:- chr2:20760208-20850890:- chr2:20823656:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20701652:- chr2:20883774-21022890:- chr2:20901412:- chr2:20622814,chr2:20622821 chr2:20727520,chr2:20727524 NA NA chr2:20822574,chr2:20822581 chr2:20927280,chr2:20927284 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PX_domain(100%)|Lipid-droplet_associated_hydrolase(26%) PX(100%)|LIDHydrolase(12%) 4 3 5 386 152 ENST00000446825.1 ENST00000403006.6 upstream downstream duplicates(4),mismatches(1) CTTTGACGAGGAGGTGGACCCTGATGAGGGGCTCTTTGGCCCGGGCAGGAAGCTGTCTCCACAGGACCCCTCGGAGGACGTGTCATCCaTGGACC___CCCTGAAGCTATTTGATGATCCTGACCTCGGCGGGGCCATCCCCCTGGGTGACTCCCTCCTGCTGCCgGCCGCCTGTGAGAGTGGAGGGCCCACACCCAGCCTCAGCCACAGGGACGCCTCCAAGGAACTGTTCAG|CTAATGCTGCCTACCTTGGGGGCCAAGAAATGATGGAGGTGGTGAAGAGAGATGACGAAACCATAAAGGAGCATTTATGTAAG___CTTACATTTTATTATGGTACTATAGATCCTTGGTGTCCAAAAGAGTACTATGAAGACATTAAGAAGGATTTTCCAGAAGGAGACATTCGACTCTGTGAGAAAA...CCCCCACTGCCAGTACATGGAGGCAGTCAGTGTACTAGACTTAGTAG___AGGAAATCCCTCATGGCATTATCATTCCCTAAGGACAATGAGATGTCCCTCCGC FDEEVDPDEGLFGPGRKLSPQDPSEDVSSmDPLKLFDDPDLGGAIPLGDSLLLPAACESGGPTPSLSHRDASKELFs|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20449 ARHGAP4::HCFC1 ENSG00000089820.17::ENSG00000172534.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1912 FALSE NA FALSE NA ARHGAP4 ENSG00000089820.17 protein_coding - - chrX:153907367-153934999:- chrX:153912700:- chrX:153172821-153200452:- chrX:153178154:- HCFC1 ENSG00000172534.14 protein_coding - - chrX:153947557-153971818:- chrX:153952958:- chrX:153213008-153237269:- chrX:153218409:- chrX:153911137 chrX:153953390 NA NA chrX:153176591 chrX:153218841 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)| Acetyltransf_1(100%),Acetyltransf_10(100%),Acetyltransf_7(100%),FCH(100%),FR47(100%)| 3 2 6 386 409 ENST00000393721.5 ENST00000310441.12 upstream downstream duplicates(3),mismatches(2) CAGCAGGAGACCGAAACCTTCTACCTCACG___AAGCTCCAGGAGTATCTGAGTGGACGGAGCATCCTCGCCAAGCTGCAGGCCAAGCACGAGAAGCTGCAGGAGGCCCTTCAGCGAG___GTGACAAGGAGGAGCAGGAGGTGTCTTG___GACCCAGTACACACAGAGAAAATTCCAGAAGAGCCGCCAGCCCCGCCCCAGCTCCCAGTATAACCAGAGACTCTTTGGGGGAGACATGGAGAAGTTTATCCAG|CCCCCAGAGGAACTCCAGGTGTCGCCAGGTCCTCGCCAGCAGCTGCCGCCACGGCAGCTTCTGCAGTCGGCTTCCACAGCCCTGATGGGGGAGTCCGCCGAGGTCCTGTCAGCCTCCCAGACCCCTGAGCTCCCGGCCGCCGTGGATCTGAGCAGCACAGGGGAGCCATCTTCGGGCCAGGAGTCTGCCGGCTCTGCGGTGGTGGCCACTGTGGTGGTCCAGCCACCCCCACCCACACAGTCCGAAGTAGACCAGTTATCACTTCCCCAAGAGCTAATGGCCGAGGCCCAAGCTGGCACCACCACCCTCATGGTAACGGGGCTCACCCCCGAG...GCCCAGtCCCTGcCCATCCAGGgGtgGCTCCAGGCCGCGCAGCAGtCCGTCATGG___GCACCGGCGAGCCCATGGACACCTCCGAGGCAGCAGCAACCGTG QQETETFYLTKLQEYLSGRSILAKLQAKHEKLQEALQRGDKEEQEVSWTQYTQRKFQKSRQPRPSSQYNQRLFGGDMEKFIQ|PPEELQVSPGPRQQLPPRQLLQSASTALMGESAEVLSASQTPELPAAVDLSSTGEPSSGQESAGSAVVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20450 KLHL3::PKD2L2-DT ENSG00000146021.15::ENSG00000250159.7 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLHL3 ENSG00000146021.15 protein_coding - - chr5:137617500-137736089:- chr5:137709750:- chr5:136953189-137071778:- chr5:137045439:- PKD2L2-DT ENSG00000250159.7 lncRNA - + chr5:137809780-137889394:- chr5:137855872:+ chr5:137145469-137225083:- chr5:137191561:+ chr5:137702684,chr5:137702689 chr5:137838918,chr5:137838913 NA NA chr5:137038373,chr5:137038378 chr5:137174607,chr5:137174602 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none BTB/POZ_domain(38%)| BTB(38%)| 2 3 4 20 12 ENST00000309755.9 unknown upstream upstream duplicates(2) CTGCGAGTAAGTCAGAGGAAGGAGGATTGAGAAGGGAGGAGGCTTCACTTGCAGCCATGCTGAATCACTGTTGCTGATCAGATTTCCCACTGGTCTGCTGG...AGAAGAACCAGAGGACGATCACTGTCAACCCTGCCCACATGGGGAAAGCATTCAAGGTTATGAATGAACTGCGGAG___TAAACAGCTGTTGTGTGACGTGATGATTGTGGCAGAAGATGTCGAGATAGAAGCCCACCGTGTGGTCCTGGCAGCCTGCAGCCCCTACTTCTGTGCGATGTTCACAG|GTGCTCAGGGAAGTAAGGAAGTTTTATCTCTGGAATTGTGGTTGAAATGTGCTACAGAAATTTCAGG___GATAAAGAAGAAAACCACTAGAGTTTCTCTGACCATCAGCTCCCCAACGAATGAAACCTCCA...CTTCAAGACATCCCTACAACCAGAGGTCAGTTGGTCATGTTTGAATGCGGAATCCAGGCCACAGCCACAGTTCAAGTTCACTGGTACAGAGAGAACGTGC KNQRTITVNPAHMGKAFKVMNELRSKQLLCDVMIVAEDVEIEAHRVVLAACSPYFCAMFT|gaqgskevlslelwlkcateisgikkkttrvsltissptnets NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20458 ERC1::FSTL3 ENSG00000082805.21::ENSG00000070404.10 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3507 TRUE 1331 ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1266287:+ chr12:1099675-1605099:+ chr12:1375453:+ FSTL3 ENSG00000070404.10 protein_coding + + chr19:676392-683392:+ chr19:677792:+ chr19:676392-683392:+ chr19:677792:+ chr12:1266683,chr12:1266683 chr19:676381,chr19:676378 NA NA chr12:1375849,chr12:1375849 chr19:676381,chr19:676378 NA NA sense sense out-of-frame intron CDS/splice-site translocation high none RIM-binding_protein_of_the_cytomatrix_active_zone(86%)|Follistatin/Osteonectin-like_EGF_domain(100%),Kazal-type_serine_protease_inhibitor_domain(100%) Cast(62%)|FOLN(100%),Kazal_1(100%),Kazal_2(100%) 1 0 7 13 15 ENST00000543086.7 ENST00000166139.9 downstream upstream duplicates(1) GGAAGAAGCACTAAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTAGCACAAGAGGAATCAGCCAGGACCAATGCTGAAAAACAG___CTGTTGCGTGAAATATTGCATGAGACCAGTTATTTGAACTTTAAGTGGTTCAAG|GTGGTGTTTGCTGGCTCCAGCAGGGCCAGGAGGCCACCTGCAGCCTGGTGCTCCAGACTGATGTCACCCGGGCCGAGTGCTGTGCCTCCGGCAACATTGACACCGCCTGGTCCAACCTCACCCACCCGGGGAACAAGATCAACCTCCTCGGCTTCTTG EEALRESVQITAEREMVLAQEESARTNAEKQllreilhetsylnfkwfk|vvfagssrarrppaawcsrlmspgpsavppatltppgptsptrgtrstssas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation TRUE follistatin-like 3 (secreted glycoprotein) 1 B-CLL leukaemia_lymphoma oncogene, fusion translocation 20459 ERC1::FSTL3 ENSG00000082805.21::ENSG00000070404.10 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3507 TRUE 1331 ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1263165:+ chr12:1099675-1605099:+ chr12:1372331:+ FSTL3 ENSG00000070404.10 protein_coding + + chr19:676392-683392:+ chr19:681650:+ chr19:676392-683392:+ chr19:681650:+ chr12:1266683,chr12:1266683 chr19:676381,chr19:676378 NA NA chr12:1375849,chr12:1375849 chr19:676381,chr19:676378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none RIM-binding_protein_of_the_cytomatrix_active_zone(86%)| Cast(61%)| 0 1 1 339 56 ENST00000543086.7 ENST00000166139.9 downstream upstream none GGGAAATGGTGCTAGCACAAGAGGAATCAGCCAGGACCAATGCTGAAAAACAG|GCACCCCTGAGGAGCCGCCAGGTGGTGAGTCTGCAGAAGAGGAAGAGAACTTCGTGTGAGCCTGCAGGACAGGCCTGGGCCTGGTGCCCGAGGCCCCCCATCATCCCCTGTTATTTATTGCCACAGCAGAGTCTAATTTATATGCCACGGACACTCCTTAGAGCCCGGATTCGGACCACTTGGGGATCCCAGAACCTCCCTGACGATATCCTGGAAGGACTGAGGAAGGGAGGCC EMVLAQEESARTNAEKQ|aplrsrqvvslqkrkrtscepagqawawcprppiipcyllpqqsliymprtllrarirttwgsqnlpddileglrkgg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation TRUE follistatin-like 3 (secreted glycoprotein) 1 B-CLL leukaemia_lymphoma oncogene, fusion translocation 20460 HMGA2::TBK1 ENSG00000149948.14::ENSG00000183735.11 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3508 TRUE 1332 HMGA2 ENSG00000149948.14 protein_coding + + chr12:65824460-65966291:+ chr12:65838569:+ chr12:66218240-66360071:+ chr12:66232349:+ TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64466901:+ chr12:64845870-64895894:+ chr12:64860681:+ chr12:65906673,chr12:65906674 chr12:64465837,chr12:64465835 NA NA chr12:66300453,chr12:66300454 chr12:64859617,chr12:64859615 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none AT_hook_motif(85%)|Protein_kinase_domain(50%),TANK-binding_kinase_1_coiled-coil_domain_1(100%),TANK_binding_kinase_1_ubiquitin-like_domain(100%) AT_hook(0%)|PK_Tyr_Ser-Thr(54%),Pkinase(40%),Pkinase_fungal(74%),TBK1_CCD1(100%),TBK1_ULD(100%) 0 2 5 518 317 ENST00000403681.7 ENST00000676809.1 downstream upstream duplicates(2),mismatches(2) CCGGGGCGGTCGAGGCGAAGCGGCTGCAGCGGCGGTAGCGGCGGCGGGAGGCAGGATGAGCGCACGCGGgGAGGGgGgGGGGggGgCcgCCcCTTCcGCCC...GAACCAACCGGTGAGCCCTCTCCTAAGAGACCCAGGGGAAGACCCAAAGGCAGCAAAAACAAGAGTCCCTCTAAAGCAGCTCAAAAG___AAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAGGCAGACCTAGGAAATGG|TGGGTGGAATGAATCATCTACGAGAGAATGGTATAGTGCACCGTGATATCAAGCCAGGAAATATCATGCGTGTTATAGGGGAAGATGGACAGTCTGTGTACAAACTCACAGATTTTGGTGCAGCTAGAGAATTAGAA...ACAGTTGATCTTTGGAGCATTGGGGTAACATTTTACCATGCAGCTACTGGATCACTGCCATTTAGACCCTTTGAAGGGCCTCGTAGGAATAAAGAAGTGAT EPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKW|wve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE high mobility group AT-hook 2 (HMGIC) 1 lipoma, leiomyoma, pleomorphic salivary gland adenoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20461 HMGA2::TBK1 ENSG00000149948.14::ENSG00000183735.11 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3508 TRUE 1332 HMGA2 ENSG00000149948.14 protein_coding + + chr12:65824460-65966291:+ chr12:65838569:+ chr12:66218240-66360071:+ chr12:66232349:+ TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64474230:+ chr12:64845870-64895894:+ chr12:64868010:+ chr12:65906673,chr12:65906674 chr12:64465837,chr12:64465835 NA NA chr12:66300453,chr12:66300454 chr12:64859617,chr12:64859615 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none AT_hook_motif(85%)|Protein_kinase_domain(22%),TANK-binding_kinase_1_coiled-coil_domain_1(100%),TANK_binding_kinase_1_ubiquitin-like_domain(100%) AT_hook(0%)|PK_Tyr_Ser-Thr(24%),Pkinase(0%),Pkinase_fungal(0%),TBK1_CCD1(100%),TBK1_ULD(100%) 1 1 4 518 292 ENST00000403681.7 ENST00000676809.1 downstream upstream duplicates(3),mismatches(1) TCGAGGCGAAGCGGCTGCAGCGGCGGTAGCGGCGGCGGGgGGCAGGgTGAGCGCACGCGGgGAGGGCGCGGGGgAGCCGgCCACTTCAGCCCcGGGgCAAC...GAACCAACCGGTGAGCCCTCTCCTAAGAGACCCAGGGGAAGACCCAAAGGCAGCAAAAACAAGAGTCCCTCTAAAGCAGCTCAAAAG___AAAGCAGAAGCCACTGGAGAAAAACGGCCAAGAGGCAGACCTAGGAAATGG|CACCCTGATATGTATGAGAGAGCAGTGCTAAGAAAAGATCATCAGAAGAAATATGGAGCAACAGTTGATCTTTGGAGCATTGGGGTAACATTTTACCATGCAGCTACTGGATCACTGCCATTTAGACCCTTTGAAGGGCCTCGTAGGAATAAAGAAGTGAT___GTATAAAATAATTACAGGAAAGCCTTCTGGTGCAATATCTGGAGTACAGAAAGCAGA EPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKW|HPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE high mobility group AT-hook 2 (HMGIC) 1 lipoma, leiomyoma, pleomorphic salivary gland adenoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20462 TMCC2::FBXO3 ENSG00000133069.17::ENSG00000110429.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMCC2 ENSG00000133069.17 protein_coding + + chr1:205227946-205285632:+ chr1:205242044:+ chr1:205197074-205254760:+ chr1:205211172:+ FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33742084:- chr11:33762485-33796089:- chr11:33763630:- chr1:205259366 chr11:33747144 NA NA chr1:205228494 chr11:33768690 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 2 1 2 33 64 ENST00000358024.8 ENST00000265651.8 downstream downstream duplicates(2),mismatches(1) GCACCAGACGTCTCAGGATTCCCAGCAGCATCAGCAGCAGCAGGGTATGTCCGACCATGACTCCCCAGATGAGAAGGAGCGCTCTCCGGAGATGCATCGCGTCTCCTACGCCATGTCCCTGCACGACCTGCCCGCCCGGCCCA...GAGTAGCTCCCTGGAGCCCCAGCGTGGCAGCCCTCACCTGCTGCGCAAGGCCCCCCAGGACAGCAGCCTGGCCGCCATCCTGCACCAGCACCAGTGCCGTCCCCGCTCTTCCTCCACCACCGACACTGCTCTGCTGCTGGCCGACGGCAGCAACGTGTACCTCCTGGCTGAGGAGGCCGAAGGCATCGGGGACAAG|GAAATGGGTCCTGATGAATATGAAGAGATGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGACGAGGATGATGATTCAGCAGATATGGATGAATCAGATGAAGATGATGAAGAGGAG...CTTCTGCTGgaGGgAGCACTAGGATGATTCTtGGCTGTTAAATAGATTTCTCAATAATGTAAATAACTAAATTGTTCTCTGCATATAGCAGGAAAACTAGC...ATGTGACACTACATTAGGAATTGGATTGTTTGGGTTTGCTTTGTGTTTTTGAGGTAGAGGAAGAAATGGGAATCTTTTTTTTCTCTTCCAGGAGTCAGTGG SSSLEPQRGSPHLLRKAPQDSSLAAILHQHQCRPRSSSTTDTALLLADGSNVYLLAEEAEGIGDK|EMGPDEYEEMEEEEEEEEEEDEDDDSADMDESDEDDEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20463 SFMBT2::ITIH5 ENSG00000198879.13::ENSG00000123243.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SFMBT2 ENSG00000198879.13 protein_coding - - chr10:7158624-7411488:- chr10:7367649:- chr10:7200586-7453450:- chr10:7409611:- ITIH5 ENSG00000123243.15 protein_coding - - chr10:7559270-7666998:- chr10:7586069:- chr10:7601232-7708961:- chr10:7628032:- chr10:7356649 chr10:7587065 NA NA chr10:7398611 chr10:7629028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none mbt_repeat(24%)|Inter-alpha-trypsin_inhibitor_heavy_chain_C-terminus(100%),von_Willebrand_factor_type_A_domain(88%) MBT(0%)|ITI_HC_C(100%),VWA(17%),VWA_2(16%),VWA_3(17%) 3 0 2 7 3 ENST00000397167.6 ENST00000397146.7 upstream downstream duplicates(1) GACAGGAGCAAGTGCTGCTCCCCACACATCATTCAAACAC___GTTGAAATCAGCATTCAGAGCAACTTCCAGCCAGGAATGAAATTGGAAGTGGCTAATAAGAACAACCCGGACACGTACTGGGTGGCCACGATCATTACCACGTGCGGGCAGCTGCTGCTTCTGCGCTACTGCGGTTACGGGGAGGACCGCAGGGCCGACTTCTGGTGTGACGTAGTCATCGCGGATTTGCACCCCGTGGGGTGGTGCACACAGAACAACAAGGTGTTGATGCCGCCGGACG|ACCAAGGATGCCCTCTTCACAATTCTCCATGACCTCCGAC...TGGATTTTCCAACCGGATCAAAGTATGGAAGGACCACTTGATATCAGTCACTCCAGACAGCATCAGGGATGGGAAAGTGTACATTCACCATATGTCACCCACTGGAG TGASAAPHTSFKHVEISIQSNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVVIADLHPVGWCTQNNKVLMPPD|dqgcplhnsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20473 NR2F2-AS1::LINC02253 ENSG00000247809.11::ENSG00000259485.2 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NR2F2-AS1 ENSG00000247809.11 lncRNA - - chr15:96110040-96327361:- chr15:96282832:- chr15:96653269-96870590:- chr15:96826061:- LINC02253 ENSG00000259485.2 lncRNA + - chr15:97215812-97432094:+ chr15:97336007:- chr15:97759042-97975324:+ chr15:97879237:- chr15:96277861 chr15:97339854 NA NA chr15:96821090 chr15:97883084 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 0 4 72 2 ENST00000693368.1 unknown upstream downstream duplicates(1) CACGAAGATCCGAAGGTGGCCAAAAATAACAGCGCTTTCCAGATGAGG___GAGCCAGTTGTCCAGCACAGTGTCATGGGACAGTGGGCCCTGGTGCCACAATGCCCGGCATCTCCACCAGATACAGCTTTGAGATCTTCATGATGAAGCTTGCTCCAATCCAAGGGCTGTCAGGTGG...GCGGTTCAGCTGCTAACCTTTCTTTG|GTTGCTATTTCAGATGATCTCGAGGATTCGCCATTAACAGGAAGATAGGGAGACAGACCAAGCACAGAAGCCAGAAAATAGAACTGAATGtAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20475 NUDT7::ENSG00000260922 ENSG00000140876.11::ENSG00000260922.2 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUDT7 ENSG00000140876.11 protein_coding + + chr16:77722492-77742260:+ chr16:77725584:+ chr16:77756389-77776157:+ chr16:77759481:+ ENSG00000260922 ENSG00000260922.2 lncRNA + + chr16:77234877-77299950:+ chr16:77289276:+ chr16:77268774-77333847:+ chr16:77323173:+ chr16:77741096 chr16:77257350 NA NA chr16:77774993 chr16:77291247 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none NUDIX_domain(20%)| NUDIX(0%)| 1 0 3 128 148 ENST00000613075.4 ENST00000561672.1 downstream upstream duplicates(1) CGACCGAGCAGCTCCGAGGAGTCCGCCCGGAAACAAACATTCCCCAGGGCAATGTCACGACTTGGTCTTCCCGAGGAGCCAGTCAG___AAACAGTTTGCTAGATGATGCTAAGGCCCGCTTAAGAAAGTATGATATTGGAGGCAAATATTCTCACTTGCCATATAACAAATACTCCGTCCTTTTGCCATTGGTGGCTAAAGAAGGAAAACTCCATTTGTTGTTCACCGTCCGGTCAGAGAAG|GAGCTGGACAGAAGTTTGTATTACAGGCTCGTAGCACCGGAGGTTTCTGATGGAGCAGACAACTTGAGGAAGGCCGGCCTTGCTGAACACAGTGGACTGACCGGGTCTGGACCCCTCCCCCACAGGTGACT MSRLGLPEEPVRNSLLDDAKARLRKYDIGGKYSHLPYNKYSVLLPLVAKEGKLHLLFTVRSEK|eldrslyyrlvapevsdgadnlrkaglaehsgltgsgplphr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20477 UNC5D::ZMAT4 ENSG00000156687.11::ENSG00000165061.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UNC5D ENSG00000156687.11 protein_coding + + chr8:35235475-35796550:+ chr8:35235887:+ chr8:35092993-35654068:+ chr8:35093405:+ ZMAT4 ENSG00000165061.15 protein_coding - + chr8:40530590-40897833:- chr8:40635023:+ chr8:40388109-40755352:- chr8:40492542:+ chr8:35252823,chr8:35252820 chr8:40623790,chr8:40623784 NA NA chr8:35110341,chr8:35110338 chr8:40481309,chr8:40481303 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 2 0 1 280 7 ENST00000404895.7 unknown downstream upstream duplicates(1),mismappers(1),mismatches(1) GGGACTGCGGGCGACTCCGGCATCCGCGCTGGCGGCAGCGGTCGCCGCGCCGTGGGAAGCTATGGGGACGCGCCCTTTCTCGGGGTGCCCATTCAGCGGCGGCTCGGgGC...CTGAAGACTCCCGAGACCCATTCGACTCGGGACCCTCATCGCCGACCCTTTCCCGGGCTCCCGGAGCGTGAAGAAGAGCCGCCCTCCGGAACGCGGCGAGGAGCATGGGGAGAGCGGCGGCCACCGCAGGCGGCGGCGGAGGGGCGCGCCGCTGGCTCCCGTGGCTGGGGCTGTGCTTCTGGGCGGCAGGGACCGCGGCTGCCCGAG|GTGATGAGAGATCTTTTTAAAGGCAAAGACAGCAATTTCCTGGGGATCTATGAGTACACTGTTCAACTACAGTACAG___GGACCCTGGCTGATCAGGTACAGCACATGGCAGAGGAATGTTCAAGACTGGAGaTCTG MGRAAATAGGGGGARRWLPWLGLCFWAAGTAAAR|gdersf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20478 BCAS3::NFATC2 ENSG00000141376.24::ENSG00000101096.20 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60808076:+ chr17:58754814-59470199:+ chr17:58885437:+ NFATC2 ENSG00000101096.20 protein_coding - - chr20:51386957-51562831:- chr20:51475660:- chr20:50003494-50179370:- chr20:50092197:- chr17:60828900,chr17:60828900,chr17:60828900,chr17:60828900,chr17:60828900,chr17:60828900,chr17:60828900 chr20:51499814,chr20:51499819,chr20:51499836,chr20:51499781,chr20:51499782,chr20:51499784,chr20:51499801 NA NA chr17:58906261,chr17:58906261,chr17:58906261,chr17:58906261,chr17:58906261,chr17:58906261,chr17:58906261 chr20:50116353,chr20:50116358,chr20:50116375,chr20:50116320,chr20:50116321,chr20:50116323,chr20:50116340 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Rel_homology_DNA-binding_domain(78%),Rel_homology_dimerisation_domain(100%) |RHD_DNA_bind(33%),RHD_dimer(100%),TIG(100%) 1 1 1 121 18 ENST00000407086.8 ENST00000609943.5 downstream downstream none AAAATAGTCTGGGTCAGATTTGAAAATGCAGATTTAAATG___ATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAgTGAACCGCCTTTGTT...CCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTG___GTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGG|CTCCATGGCTACATGGAAAACAAGCCTCTGGGACTTCAGATCTTCATTGG...AAGCCGCACGCCTTCTACCAGGTGCACCGAATCACGGGGAAAACTGTCACCACCACCAGCTATGAGAAGATAGTGGGCAACACCAAAGTCCTGGAGATcCCCTTGGAGCCCAAAAACAACATGAGGGCAAC___CATCGAC PIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSg|smatwktslwdfrssl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3194 chr20:51452905-51452977:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 1 Ewing sarcoma mesenchymal oncogene, fusion translocation 20481 ARHGAP19-SLIT1::R3HCC1L ENSG00000269891.2::ENSG00000166024.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP19-SLIT1 ENSG00000269891.2 protein_coding - - chr10:97153045-97292637:- chr10:97256318:- chr10:98912802-99052394:- chr10:99016075:- R3HCC1L ENSG00000166024.14 protein_coding + - chr10:98134624-98244897:+ chr10:98168618:- chr10:99894381-100004654:+ chr10:99928375:- chr10:97247096 chr10:98186732 NA NA chr10:99006853 chr10:99946489 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none RhoGAP(100%)| 1 1 1 440 1 ENST00000479633.2 unknown upstream downstream duplicates(2) CCTCATTCTCCCTCCTCCTAATCGTAATTTGCTGAAGTTATTGCTTGATCTCCTATACCAGACAGCAAAGAAACAAGACAAGAACAAGATGTCAGCCTATA...CACAAAGTTAAACAGTGGGATGGCTTTTATGATTAAACACTCCCAGAAACTTTTTAAG|CTGGACAAAGAATACAGCTTGCACAACTGGAAGAAACATTTCATGAAAAAACTGAGTATCAAGACAACAAAAGATACAAGATACtTGATTCCAGTAGGATCTTGGAGGTCCCAAAATATATAAATAAACTGGCATGAAAA TKLNSGMAFMIKHSQKLFK|ldkeyslhnwkkhfmkklsikttkdtrylipvgswrsqni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20482 DCDC1::PRR5L ENSG00000170959.15::ENSG00000135362.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3512 TRUE 1333 DCDC1 ENSG00000170959.15 protein_coding - - chr11:30830369-31369810:- chr11:31127469:- chr11:30851916-31391357:- chr11:31149016:- PRR5L ENSG00000135362.14 protein_coding + + chr11:36296288-36465204:+ chr11:36462342:+ chr11:36317838-36486754:+ chr11:36483892:+ chr11:31113955,chr11:31114001,chr11:31113957 chr11:36457747,chr11:36457452,chr11:36457745 NA NA chr11:31135502,chr11:31135548,chr11:31135504 chr11:36479297,chr11:36479002,chr11:36479295 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 0 1 2 79 7 ENST00000684477.1 ENST00000530639.6 upstream upstream none AAACAaGCTTGTCCCAGGAGGCCTGCAGCTTAAG|CCAGtCGtCACTCCAGGGTCCGGCCCAAGGTGACTGTCCTGAACTATGCCTCCCCGATAACCGCAGT...GGCCACTGAATGAGATGGTCTTGACCCCACTGACAGAGCAGGAGGGGGAAGCCTACCTGGAGAAGTGTGGCAGCGTGCGGCGGCACACGGTGGCCAATGCC...AGTcAGCCCAACATCACcGACAACCCTGACGGACTGGAGGAGGGGGCCAGGGGCAGCCAGGAGGGCTCGGAGCTGAACTGTGCTTCCCTCAGCTGAGTCGC NkLVPGGLQLK|pvvtpgsgpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20483 DCDC1::PRR5L ENSG00000170959.15::ENSG00000135362.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3512 TRUE 1333 DCDC1 ENSG00000170959.15 protein_coding - - chr11:30830369-31369810:- chr11:31137692:- chr11:30851916-31391357:- chr11:31159239:- PRR5L ENSG00000135362.14 protein_coding + + chr11:36296288-36465204:+ chr11:36462342:+ chr11:36317838-36486754:+ chr11:36483892:+ chr11:31113955,chr11:31114001,chr11:31113957 chr11:36457747,chr11:36457452,chr11:36457745 NA NA chr11:31135502,chr11:31135548,chr11:31135504 chr11:36479297,chr11:36479002,chr11:36479295 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none none none 0 0 0 239 7 ENST00000684477.1 ENST00000530639.6 upstream upstream mismatches(1) ATAAGGAACAGGAAGAA|CCAGGCGGCACTCCAGGGTCCGGCCCAAGGTGACTGTCCTGAACTATGCCTCCCCGATAACCGCAGTCcGCCGGCCACTGAATG...GGCCAGCAGTGAGAACAAGTGCCTGCTCCTGCCACCCAGCTTCCCCCCGCCCCACCGGCAGTGCTCCAGTGAGCCCAACATCACcGACAACCCTGACGGAC KEQEE|pggtpgsgpr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20484 ARHGAP19::R3HCC1L ENSG00000213390.11::ENSG00000166024.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP19 ENSG00000213390.11 protein_coding - - chr10:97222173-97292673:- chr10:97256318:- chr10:98981930-99052430:- chr10:99016075:- R3HCC1L ENSG00000166024.14 protein_coding + - chr10:98134624-98244897:+ chr10:98168618:- chr10:99894381-100004654:+ chr10:99928375:- chr10:97247096 chr10:98186732 NA NA chr10:99006853 chr10:99946489 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RhoGAP_domain(100%)| RhoGAP(100%)| 1 1 1 440 1 ENST00000358531.9 unknown upstream downstream duplicates(2) CCTCATTCTCCCTCCTCCTAATCGTAATTTGCTGAAGTTATTGCTTGATCTCCTATACCAGACAGCAAAGAAACAAGACAAGAACAAGATGTCAGCCTATA...CACAAAGTTAAACAGTGGGATGGCTTTTATGATTAAACACTCCCAGAAACTTTTTAAG|CTGGACAAAGAATACAGCTTGCACAACTGGAAGAAACATTTCATGAAAAAACTGAGTATCAAGACAACAAAAGATACAAGATACtTGATTCCAGTAGGATCTTGGAGGTCCCAAAATATATAAATAAACTGGCATGAAAA TKLNSGMAFMIKHSQKLFK|ldkeyslhnwkkhfmkklsikttkdtrylipvgswrsqni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20485 ENSG00000286290::DNAH9 ENSG00000286290.1::ENSG00000007174.18 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000286290 ENSG00000286290.1 lncRNA + + chr2:103362082-103403712:+ chr2:103362612:+ chr2:103978540-104020170:+ chr2:103979070:+ DNAH9 ENSG00000007174.18 protein_coding + + chr17:11598470-11969748:+ chr17:11923814:+ chr17:11501787-11873065:+ chr17:11827131:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Dynein_heavy_chain_AAA_lid_domain(64%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(86%) |AAA_lid_11(100%),Dynein_C(100%),Dynein_heavy(31%) 0 1 1 1 2 ENST00000669555.1 ENST00000262442.9 downstream upstream none GCAAGATGAAGAGAACATTTATAAAATATCCATACTGTGCATCTCTGAATAATCTTTTCTTCACATCAGCGGCAGTACAAATTAGGTGGAGTTTTAAAAGA...TTcCAGATTACAGCATGTTATGTATCTTCAAG|GAAGAAAACTTGGATACACCTTCAACAATCAGAACTTTCACAACGTGTCTTTGGGGCAAGGACAGGAAGTGGTGGCTGAGGCTGCGCTGGACCTCGCTGCCAAG...ACTCCCAGGCAACATGGACTACAATGGTTATCATCAGGTGAGACTCTGCTCTGTGCTTCTGATGTCGTGAGGGTGCTCACAGGGCCCTGGGTATTCCcCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20488 ELP4::MPPED2-AS1 ENSG00000109911.19::ENSG00000254489.4 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELP4 ENSG00000109911.19 protein_coding + + chr11:31509755-31790324:+ chr11:31784469:+ chr11:31531302-31811872:+ chr11:31806017:+ MPPED2-AS1 ENSG00000254489.4 lncRNA + + chr11:30584112-30632583:+ chr11:30600687:+ chr11:30605659-30654130:+ chr11:30622234:+ chr11:31784760 chr11:30591651 NA NA chr11:31806308 chr11:30613198 NA NA sense sense unknown 3'UTR intron duplication medium none PAXNEB_protein(100%)| PAXNEB(100%)| 10 7 10 119 15 ENST00000640961.2 unknown downstream upstream duplicates(1) AGAAAAACATATACTGAAGCTTGTTGAGAGATTTTACAGAACATAGGTCTGAGACAAAGTGAAAAAATGAAACTAACTCAGATTTCCATTGCATCACATAAATATTTTGTTAATAATGAACATTGGTTGAGTGTGTAAATTTCTAACCATGTAAACATGTCTTTGGGGGGTATAGCATATCGAACCAGTTTTCATATGAAACATTAGGTGTTTTAATTACAATT|ATTCCTTAATCTCTTTTAGTCTACTGGTTCACTCTTATCATGCTACAAACGTTTGTGCCTCTGTATCTTCTACCTTCTAGTCACCAACAGACATCTTAACATGCTAATCTATAAAATTTCACCTCCCAATAATGGATTCTTCAATCAATTAACACCTGAAACTGCTTTATATATAGTCACCTAGATTTGATCACACACTTTCTTTTATCTTTTTGTTTGACCTAGTCATGGCAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20500 SMIM14::UBE2K ENSG00000163683.12::ENSG00000078140.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMIM14 ENSG00000163683.12 protein_coding - - chr4:39546336-39638902:- chr4:39572415:- chr4:39547956-39640522:- chr4:39574035:- UBE2K ENSG00000078140.14 protein_coding + + chr4:39698109-39782792:+ chr4:39755657:+ chr4:39699729-39784412:+ chr4:39757277:+ chr4:39559301 chr4:39751654 NA NA chr4:39560921 chr4:39753274 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none Protein_of_unknown_function_(DUF2615)(41%)|UBA/TS-N_domain(100%),Ubiquitin-conjugating_enzyme(53%) DUF2615(61%)|UBA(100%),UQ_con(27%) 0 4 0 57 472 ENST00000510628.1 ENST00000261427.10 upstream upstream multimappers(1) GAG___TTACGGCAGTCCCAGTCCTACTGCACAGACACAGAGTGTCTTCAGGAAT|GTCCGGTTTATCACTAAAATATGGCATCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATATCCTGAAAGATCAATG___GGCAGCTGCAATGACTCTCCGCACGGTATTATTGTCATTGCAAGCACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAG___TACAAACAAAATCCCGAAATGTTCAAACAGACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCACCAGTTTCTAGTCCAGAATACACCAAAAAAATAGAAAACCTATGTGCTATGGGCTTTGATAGG___AATGCAGTAATAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20501 ELP4::ENSG00000286215 ENSG00000109911.19::ENSG00000286215.1 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ELP4 ENSG00000109911.19 protein_coding + + chr11:31509755-31790324:+ chr11:31520091:+ chr11:31531302-31811872:+ chr11:31541638:+ ENSG00000286215 ENSG00000286215.1 transcribed_processed_pseudogene - - chr6:126304223-127213609:- chr6:126304781:- chr6:126625369-127534754:- chr6:126625927:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none PAXNEB_protein(11%)| PAXNEB(3%)| 1 1 1 1394 8 ENST00000640961.2 ENST00000652383.1 downstream downstream mismappers(1) CTCTAAGATGGCGGCcGTGGCAACCTGCGGTAGTGTTGCCGCGAGTACTGGGTCTGCAGTGGCGACAGCCAGCAAGAGCAACGTCACCAGTTTCCAGAGGA...CGACCGTCGGTGCGGAATGGACAGCTGCTGGTATCAACCGGGCTCCCAGCCCTAGACCAGCTCTTAG___GTGGAGGTTTAGCCGTTGGAACAGTTCTTCTAATTG|ACGGTGTCTTGCTGTTGTCGGCCCGGACTA...AGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCTGCCTCCCGTGTTCCAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACCACGCCCTGCTATTTTTTGTATTTTTTAGTAGAGACGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAGGTGATCCG...CAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCAGCCTGAGCACATATTTTTAAGGAATCCACAACGAAAACTATGAGAACTAACAAGTGAATTTAG RPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLI|dgvlllsart NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20505 CD44::DCDC1 ENSG00000026508.21::ENSG00000170959.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35214913:+ chr11:35160429-35253949:+ chr11:35236460:+ DCDC1 ENSG00000170959.15 protein_coding - + chr11:30830369-31369810:- chr11:30921384:+ chr11:30851916-31391357:- chr11:30942931:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Extracellular_link_domain(92%)| Xlink(84%)| 1 1 1 1149 5 ENST00000263398.11 unknown downstream upstream none AGCAGCGGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACTGTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCA___GAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCTGAATCAGAT|GACTTTTGTCCTGGTTCCTGGAGAAAACTTAATGGAAGGAGGAAGATCATGAGGAAATTAGAACTTTTATAAAAGAAAAGCAAAAGTCCAAAGATAGTTTTTGACATTCAAACAGC...ACACAGTCATGATCTATGGTTTCTCCAAAAGCCTGTAGCTCCCACTTACTGTATCAAGAGTTTAACTTCAGGATTGACCTGGAGAAAAACCATCACTCCTG SSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGSESD|dfcpgswrklngrrkimrklell* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20515 LINC02253::ENSG00000275443 ENSG00000259485.2::ENSG00000275443.2 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3518 TRUE 1334 LINC02253 ENSG00000259485.2 lncRNA + + chr15:97215812-97432094:+ chr15:97236319:+ chr15:97759042-97975324:+ chr15:97779549:+ ENSG00000275443 ENSG00000275443.2 lncRNA + + chr15:95990582-96300990:+ chr15:96300694:+ chr15:96533811-96844219:+ chr15:96843923:+ chr15:97339854 chr15:96277861 NA NA chr15:97883084 chr15:96821090 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 0 242 15 ENST00000559321.2 ENST00000619812.1 downstream upstream none CTTGCACTATAAGTTGAAAACATCGCTTATAAACAATACATCACAGCACACTTGCAGAGAGAGCACTG|TCCTACTTTGCCAGAAATTTGCAGGTGTCAGGTGGACTACCTGGAGAAGATGCTACAGGAGAAAGTGAACCCGGACCGCCAGTCTTCTTGAGTTT___GCTGATATGATGCTATGATCTGACAGGCATGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20516 LINC02253::ENSG00000275443 ENSG00000259485.2::ENSG00000275443.2 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3518 TRUE 1334 LINC02253 ENSG00000259485.2 lncRNA + + chr15:97215812-97432094:+ chr15:97296323:+ chr15:97759042-97975324:+ chr15:97839553:+ ENSG00000275443 ENSG00000275443.2 lncRNA + + chr15:95990582-96300990:+ chr15:96300694:+ chr15:96533811-96844219:+ chr15:96843923:+ chr15:97339854 chr15:96277861 NA NA chr15:97883084 chr15:96821090 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 0 52 15 ENST00000656523.1 ENST00000619812.1 downstream upstream none GCGCTTCCCGAGTGAGGCAATGTCTCGCCCTGCTTTGGCTCGCGCcTGGTGCGCTGCACCCACTGTCCTGCGCCCtCTGTCTGGCACTCCCTAGTGAGATG...TTCGTCCATCTTGGCTGTAATCCCAG|TCCTACTTTGCCAGAAATTTGCAGGTGTCAGGTGGACTACCTGGAGAAGATGCTACAGGAGAAAGTGAACCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20523 DCK::MOB1B ENSG00000156136.10::ENSG00000173542.9 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DCK ENSG00000156136.10 protein_coding + + chr4:70992538-71030914:+ chr4:70998182:+ chr4:71858255-71896631:+ chr4:71863899:+ MOB1B ENSG00000173542.9 protein_coding + + chr4:70902326-71022449:+ chr4:70958874:+ chr4:71768043-71888166:+ chr4:71824591:+ chr4:71017407 chr4:70951795 NA NA chr4:71883124 chr4:71817512 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Deoxynucleoside_kinase(19%)|Mob1/phocein_family(100%) dNK(12%)|Mob1_phocein(100%) 13 4 10 391 176 ENST00000504730.5 ENST00000309395.7 downstream upstream duplicates(6),mismatches(2) TCTTTGCCGGACGAGCTCTGGGCCGCCACAAGACTAAGGAATGGCCACCCCGCCCAAGAGAAGCTGCCCGTCTTTCTCAGCCAGCTCTGAGGGGACCCGCATCAAGAAAATCTCCATCGAAGGGAACATCG___CTGCAGGGAAGTCAACATTTGTGAATATCCTTAAACAATTGTGTGAAGATTGGGAAGTGGTTCCTGAACCTGTTGCCAGATGGTGCAATGTTCAAAGTACTCAAGATGAATTTGAG|TGGTAGTCGCTCTTCTAAAACTTTTAAACCAAAGAAGAACATTCCAGAGGGTTCTCACCAGTATGAGCTCTTAAAACACGCAGAAGCCACACTTGGCAGTGGCAACCTTCGGATGGCTGTCATGCTTCCTGAAGGGGAAGATCTCAATGAATGGGTTGCAGTTAACA___CTGTGGATTTCTTCAATCAGATCAACATGCTTTATGGAACTATCACAGACTTCTGTACAGAAGAGAGTTGTCCAGTGATGTCAGCT MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFE|w* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20540 EXT1::SAMD12 ENSG00000182197.13::ENSG00000177570.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3524 TRUE 1335 EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110107:- chr8:118806729-119124065:- chr8:119122346:- SAMD12 ENSG00000177570.15 protein_coding - - chr8:118189455-118622112:- chr8:118580809:- chr8:119201694-119634351:- chr8:119593048:- chr8:117928630,chr8:117928632 chr8:118618901,chr8:118618900 NA NA chr8:118940869,chr8:118940871 chr8:119631140,chr8:119631139 NA NA sense sense unknown CDS CDS duplication low none Exostosin_family(71%)|SAM_domain_(Sterile_alpha_motif)(100%) Exostosin(0%)|SAM_1(100%),SAM_2(100%),SAM_PNT(100%) 0 0 3 160 8 ENST00000378204.7 ENST00000409003.5 upstream downstream none GGGTTTTTGAAGTTCAACACCATCCCTCCTCTCAGGAAGTACATGCTGGTATTCAAGGGGAAGAGGTACCTGACAGGGATAGGATCAGACACCAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCTCGCTGTGACA...|...TGGAATCTCAAgCCATTAAAAATAAAAATTcCCAGAAGGTGCCTGACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCTGAGACGGCTAAG___TCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Ovary,Stomach no_match TRUE Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Pancreatic adenocarcinoma,Sarcoma,Lung squamous cell carcinoma,Uterine Carcinosarcoma BREAST,HEAD_AND_NECK,PROSTATE,PANCREAS,BONE_AND_SOFT_TISSUE,LUNG,UTERUS exact 119122324,119122324,119122324,119122324,119122324,119122324,119122324 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 119209971,119209971,119209971,119209971,119209971,119391939,119209971 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES,YES,YES,YES Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 20541 EXT1::SAMD12 ENSG00000182197.13::ENSG00000177570.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3524 TRUE 1335 EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- SAMD12 ENSG00000177570.15 protein_coding - - chr8:118189455-118622112:- chr8:118439961:- chr8:119201694-119634351:- chr8:119452200:- chr8:117928630,chr8:117928632 chr8:118618901,chr8:118618900 NA NA chr8:118940869,chr8:118940871 chr8:119631140,chr8:119631139 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Exostosin_family(73%)|SAM_domain_(Sterile_alpha_motif)(100%) Exostosin(0%)|SAM_1(100%),SAM_2(100%),SAM_PNT(100%) 1 0 0 157 9 ENST00000378204.7 ENST00000409003.5 upstream downstream none CAGACACCAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCT...AGACAACACCGAGTATGAGAA|TCAGCTACGGTGAAGCTATCTAAACCGGTGGCTCTATGGACCCAGCAGGATGTCTGCAAGTGGTTGAAGAAACATTGTCC DNTEYEn|qlr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Ovary,Stomach no_match TRUE Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Pancreatic adenocarcinoma,Sarcoma,Lung squamous cell carcinoma,Uterine Carcinosarcoma BREAST,HEAD_AND_NECK,PROSTATE,PANCREAS,BONE_AND_SOFT_TISSUE,LUNG,UTERUS exact 119122324,119122324,119122324,119122324,119122324,119122324,119122324 TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE 119209971,119209971,119209971,119209971,119209971,119391939,119209971 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES,YES,YES,YES Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 20542 EXT1::SAMD12 ENSG00000182197.13::ENSG00000177570.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3524 TRUE 1335 EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- SAMD12 ENSG00000177570.15 protein_coding - - chr8:118189455-118622112:- chr8:118580893:- chr8:119201694-119634351:- chr8:119593132:- chr8:117928630,chr8:117928632 chr8:118618901,chr8:118618900 NA NA chr8:118940869,chr8:118940871 chr8:119631140,chr8:119631139 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Exostosin_family(73%)|SAM_domain_(Sterile_alpha_motif)(100%) Exostosin(0%)|SAM_1(100%),SAM_2(100%),SAM_PNT(100%) 0 0 0 157 5 ENST00000378204.7 ENST00000409003.5 upstream downstream low_entropy(1) GTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCTCGCTGTGACAGAGACAACACCGAGTATGAGAA|CTCTCCACTGTG...CCCAGGAGAACCTCCGGCAGCACATCTTACAACAGGTGCTCCAGCTGAAGGTGCGAGAAGAcGTCAcAAATCTACAGTTACTCACACAAG___CATCATCTGAG VVLLTTCKHGKDWQKHKDSRCDRDNTEYEn|spl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Ovary,Stomach no_match TRUE Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Prostate adenocarcinoma,Pancreatic adenocarcinoma,Sarcoma,Lung squamous cell carcinoma,Uterine Carcinosarcoma BREAST,HEAD_AND_NECK,PROSTATE,PANCREAS,BONE_AND_SOFT_TISSUE,LUNG,UTERUS exact 119122324,119122324,119122324,119122324,119122324,119122324,119122324 TRUE,TRUE,TRUE,TRUE,TRUE,TRUE,TRUE 119209971,119209971,119209971,119209971,119209971,119391939,119209971 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES,YES,YES,YES Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 20547 UGDH-AS1::UBE2K ENSG00000249348.2::ENSG00000078140.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UGDH-AS1 ENSG00000249348.2 lncRNA + + chr4:39527720-39594707:+ chr4:39535231:+ chr4:39529340-39596327:+ chr4:39536851:+ UBE2K ENSG00000078140.14 protein_coding + + chr4:39698109-39782792:+ chr4:39774877:+ chr4:39699729-39784412:+ chr4:39776497:+ chr4:39559319,chr4:39559348 chr4:39751654,chr4:39751654 NA NA chr4:39560939,chr4:39560968 chr4:39753274,chr4:39753274 NA NA sense sense unknown intron CDS deletion/read-through low none |UBA/TS-N_domain(100%),Ubiquitin-conjugating_enzyme(23%) |UBA(100%),UQ_con(3%) 0 0 3 18 430 unknown ENST00000261427.10 downstream upstream none CACCATGTGAGTCATGCCTTTCACCTTCCACCATGATTGTGAGGCCTCCCCAGCCACGTGGAACTtTA...|...GCACTATTGGCAGCTGCAGAGCCAGATGATCCACAGGATGCTGTAGTAGCAAATCAG___TACAAACAAAATCCCGAAATGTTCAAACAGACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20548 NUDT7::ADAMTS18 ENSG00000140876.11::ENSG00000140873.16 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUDT7 ENSG00000140876.11 protein_coding + + chr16:77722492-77742260:+ chr16:77725552:+ chr16:77756389-77776157:+ chr16:77759449:+ ADAMTS18 ENSG00000140873.16 protein_coding - + chr16:77247813-77435034:- chr16:77289279:+ chr16:77281710-77468931:- chr16:77323176:+ chr16:77741096 chr16:77257350 NA NA chr16:77774993 chr16:77291247 NA NA sense antisense unknown CDS CDS duplication/5'-5' low none NUDIX_domain(10%)| NUDIX(0%)| 0 0 3 140 148 ENST00000613075.4 unknown downstream upstream duplicates(1) CCGAGGAGTCCGCCCGGAAACAAACATTCCCCAGGGCAATGTCACGACTTGGTCTTCCCGAGGAGCCAGTCAG___AAACAGTTTGCTAGATGATGCTAAGGCCCGCTTAAGAAAGTATGATATTGGAGGCAAATATTCTCACTTGCCATATAACAAATACTCCGTCCTTTTGCCATTGGTGGCTAAAGAAGGAAAAC...|...CTGGACAGAAGTTTGTATTACAGGCTCGTAGCACCGGAGGTTTCTGATGGAGCAGACAACTTGAGGAAGGCCGGCCTTGCTGAACACAGTGGACTGACCGGGTCTGGACCCCTCCCCCACAGGTGACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20559 VPS41::MAN1A2 ENSG00000006715.16::ENSG00000198162.12 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA VPS41 ENSG00000006715.16 protein_coding - - chr7:38722974-38932394:- chr7:38862545:- chr7:38762574-38971994:- chr7:38902145:- MAN1A2 ENSG00000198162.12 protein_coding + + chr1:117367449-117528872:+ chr1:117420569:+ chr1:117910071-118071494:+ chr1:117963191:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Glycosyl_hydrolase_family_47(83%) |Glyco_hydro_47(87%) 2 0 0 499 311 ENST00000310301.9 ENST00000356554.7 upstream upstream duplicates(3) GCGGAAGCAGAGGAGCAG___GAAACTGGGTCCCTTGAAGAATCTACAGATGAGTCTGAG___GAAGAAGAGAGCGAAGAGGAACCCAAGCTGAAGTATGAAAGGCTT...GCACACATTATGGCAAGGTTTATTTACTTGATGTCCAGGGGAACATCACTCAGAAGTTTGATGTA|AATTCAGAGGTGTCTGTGTTTGAAGTCAACATTCGATTTATTGGAGGCCTACTTGCAGCATATTACCTA THYGKVYLLDVQGNITQKFDV|NSEVSVFEVNIRFIGGLLAAYY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20572 MLLT10::PLXDC2 ENSG00000078403.17::ENSG00000120594.17 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21538912:+ chr10:21813575-22032559:+ chr10:21827841:+ PLXDC2 ENSG00000120594.17 protein_coding + + chr10:19816239-20289856:+ chr10:20143295:+ chr10:20105168-20578785:+ chr10:20432224:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PHD-finger(100%)|Plexin_repeat(100%) PHD(100%),PHD_2(100%)|PSI(100%) 1 0 0 741 2 ENST00000631589.1 ENST00000377252.5 downstream upstream none GACGGGCACGGCTGCAGCGTCGCGGTGCcTCAAG___CTTGCTATGGCATTGTTCAAGTACCCACTGGACCaTGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG|GTTTCATATACACTGGAGAAGTCGTACATCGAAT DGHGCSVAVpQACYGIVQVPTGPWFCRKCESQERAARV|vsytleksyie NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20576 STRN3::SCFD1 ENSG00000196792.12::ENSG00000092108.22 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30935163:- chr14:31363005-31495607:- chr14:31404369:- SCFD1 ENSG00000092108.22 protein_coding + - chr14:30622291-30737694:+ chr14:30712365:- chr14:31091497-31206900:+ chr14:31181571:- chr14:30931523,chr14:30931540 chr14:30712575,chr14:30712590 NA NA chr14:31400729,chr14:31400746 chr14:31181781,chr14:31181796 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Striatin_family(100%)| Striatin(100%)| 58 41 87 349 255 ENST00000355683.9 unknown upstream downstream duplicates(41),mismappers(1),mismatches(7) AAAAG___GTCCTCTGGTGATGTTCTTGAGACGTTCAATTTCTTAGAAAATGCCGATGACAGTGATGAAGATGAGGAAAATGACATGATCGAAGGCATCCCAGAAGGAAAAGACAAACATCGGATGAATAAACATAAA___ATAGGTAATGAAGGTTTAGCTGCTGACCTAACTGACGATCCTGATACTGAGGAAGCACTGAAAGAATTTGATTTTTTAGTGACTGCTGAAGATGGTGAAGGAGCTGGAGAAGCACGGAGTTCGGGGGATGGCACAGAATGGG|CCCTGGGCTTCAGATGATACTCTGATGTCGAAGCTGGCAGTGGGATTGGGACAAGAATTGCTACTGTCTTGATTATCAGAGCCCTGGAGAATGAAAAAGCCCTATGTGGACCTCCTGTAAGAGGACGCTTATCTTGAAGGCAGTTATCAGCCAAGTAAAGAATTAGATGGCGTGTGTGGACACTGGAAACACTGGAGATGAGAGATGTATCAATGATAGAAGGGTGGAAAGTTGCCAGTGAAGTGAAGCTACGAGGAGAGGGAATA KRSSGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSSGDGTEW|algfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-624 chr14:31014646-31014742:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20577 NF1::ENSG00000288700 ENSG00000196712.20::ENSG00000288700.2 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3527 TRUE 1336 NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31182665:+ chr17:29421945-29709134:+ chr17:29509683:+ ENSG00000288700 ENSG00000288700.2 lncRNA + + chr3:134485721-134951651:+ chr3:134721475:+ chr3:134204563-134670493:+ chr3:134440317:+ chr17:31188228,chr17:31188319,chr17:31188222,chr17:31188210 chr3:134689697,chr3:134689655,chr3:134689688,chr3:134689693 NA NA chr17:29515246,chr17:29515337,chr17:29515240,chr17:29515228 chr3:134408539,chr3:134408497,chr3:134408530,chr3:134408535 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none none 17 16 81 102 174 ENST00000356175.7 unknown downstream upstream duplicates(21),mismatches(6) AGTTATAAATAGCCTGGAAAAG___GCATTTTGGAACTGGGTAGAAAATTATCCAGATGAATTTACAAAACTaTACCAGATCCCACAGACTGATATGGCTG___AATGTGCAGAAAAGCTATTTGACTTGGTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCAGTTTGGCCACTACAAATCATTCTCCTTATCTTGTGTCCAGAAATAATCCAGGATATATCCAAAGACGTGGTTGATGAAAACAACATGAATAAG|TGGCCCTTACTGGAGCCTCCAGTACATGTTAAATAGAAGTGATGAGAACAGACATCCTTAACTTGTTCCTGATCTTTGAGGGAATGTTTTCAGGCTTTCACCATGTGGTATGATGCTAGCTGTGGATTTAAAAAGAAATAAATTTCCTTAATCGGATTGAGGAAATTCCCTTATGTTTCTAGTTTGTTGAGTGCTTTCATTATGAAATAATATTGATTTTTGTCAAATGCCTTTTATGCATTTATTGAAATAATCTGATGCTTTC VINSLEKAFWNWVENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNK|wplleppvhvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation FALSE NA NA NA NA NA NA NA NA NA 20578 NF1::ENSG00000288700 ENSG00000196712.20::ENSG00000288700.2 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3527 TRUE 1336 NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31182665:+ chr17:29421945-29709134:+ chr17:29509683:+ ENSG00000288700 ENSG00000288700.2 lncRNA + + chr3:134485721-134951651:+ chr3:134779738:+ chr3:134204563-134670493:+ chr3:134498580:+ chr17:31188228,chr17:31188319,chr17:31188222,chr17:31188210 chr3:134689697,chr3:134689655,chr3:134689688,chr3:134689693 NA NA chr17:29515246,chr17:29515337,chr17:29515240,chr17:29515228 chr3:134408539,chr3:134408497,chr3:134408530,chr3:134408535 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 5 4 11 102 24 ENST00000356175.7 ENST00000460895.5 downstream upstream duplicates(2),low_entropy(1),mismappers(1),mismatches(4) CAGAAGACAATGTTGATGTTCATGATATAGAATTGTTACAGTATATCAATGTGGATTGTGCAAAATTAAAACGACTCCTGAAGG___AAACAGCATTTAAATTTA...TTGGAACTGGGgAGAAAATTATCCAGATGAATTTACAAAACTaTACCAGATCCCACAGACTGATATGGCTG___AATGTGCAGAAAAGCTATTTGACTTGGTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCAGTTTGGCCACTACAAATCATTCTCCTTATCTTGTGTCCAGAAATAATCCAGGATATATCCAAAGACGTGGTTGATGAAAACAACATGAATAAG|ACAAAACCAAAATGTGGTGGTGAGCCAACTTCAATTTTGCAGAAACTGACTTGGAAAGAAtTGATTACCTGAAGGACCGTGAGGATCAAAGTTGTCCCACTGACCAGGCTGTAAACTTTGGAACTGATAAGTGAGAGAGATAAG WNWgENYPDEFTKLYQIPQTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNK|tkpkcggeptsilqkltwkelit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation FALSE NA NA NA NA NA NA NA NA NA 20579 NF1::ENSG00000288700 ENSG00000196712.20::ENSG00000288700.2 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3527 TRUE 1336 NF1 ENSG00000196712.20 protein_coding + + chr17:31094927-31382116:+ chr17:31182665:+ chr17:29421945-29709134:+ chr17:29509683:+ ENSG00000288700 ENSG00000288700.2 lncRNA + + chr3:134485721-134951651:+ chr3:134925816:+ chr3:134204563-134670493:+ chr3:134644658:+ chr17:31188228,chr17:31188319,chr17:31188222,chr17:31188210 chr3:134689697,chr3:134689655,chr3:134689688,chr3:134689693 NA NA chr17:29515246,chr17:29515337,chr17:29515240,chr17:29515228 chr3:134408539,chr3:134408497,chr3:134408530,chr3:134408535 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 1 3 102 194 ENST00000356175.7 ENST00000460895.5 downstream upstream none TCGCATTTCTACCAG___GTTACAGGAATTAACTGTTTGTTCAGAAGACAATGTTGATGTTCATGATATAGAATTGTTACAGTATATCAATGTGGATTGTGCAA...CAGACTGATATGGCTG___AATGTGCAGAAAAGCTATTTGACTTGGTGGATGGTTTTGCTGAAAGCACCAAACGTAAAGCAGCAGTTTGGCCACTACAAATCATTCTCCTTATCTTGTGTCCAGAAATAATCCAGGATATATCCAAAGACGTGGTTGATGAAAACAACATGAATAAG|AAACGTTAATGGACACCAGAACGGCTACTGCAGAGCTGGGCTGGACGGCCAATCCTGCGTCCGGG___TGGGAAGAAGTCAGTGGCTACGATGAAAACCTGAACACCATCCGCACCTACCAGGTGTGCAATGTCTTCGAGCCCAACCAGAACAATTGGCTGCTCACCACCTTCATCAACCGGCGGGGGGCCCATCGCATCTACACAGAGATGCGC QTDMAECAEKLFDLVDGFAESTKRKAAVWPLQIILLILCPEIIQDISKDVVDENNMNK|kr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE neurofibromatosis type 1 gene 1 Yes neurofibroma, glioma neurofibroma, glioma neurofibromatosis type 1 other TSG, fusion large_deletion, missense, nonsense, frameshift, splice_site, other, translocation FALSE NA NA NA NA NA NA NA NA NA 20583 MYO1D::NF1 ENSG00000176658.17::ENSG00000196712.20 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32876778:- chr17:30819540-31204195:- chr17:31203796:- NF1 ENSG00000196712.20 protein_coding + - chr17:31094927-31382116:+ chr17:31144722:- chr17:29421945-29709134:+ chr17:29471740:- chr17:32874904 chr17:31159937 NA NA chr17:31201922 chr17:29486955 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Myosin_head_(motor_domain)(2%)| Myosin_head(0%)| 6 27 18 331 60 ENST00000318217.10 unknown upstream downstream duplicates(17),mismatches(9) ATCGCGGGCCCACGGAGCGGCCCCGGAGGCCCGAGCGCGCCCACCTGAGCCCCCGCGCTGGCGCCATGGCGGAGCAGGAGAGCCTGGAATTCGGCAAGGCAGACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTTCATGGCCAACCTCAGGCTCAG|AAGCCAGTTGTCATGTAAAAAATGGGACTACTCTGAGATCAGCATGCTGTGAGAAGCCGAGGCCACATGCAGAGATTCTGAAGAATGGGACGCCATTGTGGAGAGAGAGGCCAAGAAACACTGAGGAGCCAGACATGTGACTGAAGAAGCCATAATGGAAGGGATTCTCCAGTGTCAGCAACACAATATGGAACAGAAGAACTGCCCAGCTGAACCTGTCATGAATTCCTGACCCCCAAAAATTGT MAEQESLEFGKADFVLMDTVSMPEFMANLRLr|sqlsckkwdyseisml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20584 PPIL3::AGAP1 ENSG00000240344.10::ENSG00000157985.20 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1917 TRUE 3529 TRUE 1337 PPIL3 ENSG00000240344.10 protein_coding - - chr2:200870907-200889303:- chr2:200885698:- chr2:201735630-201754026:- chr2:201750421:- AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235883345:+ chr2:236402687-237040437:+ chr2:236791989:+ chr2:200885419,chr2:200885421 chr2:235830464,chr2:235830462 NA NA chr2:201750142,chr2:201750144 chr2:236739108,chr2:236739106 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(12%)|Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%) Pro_isomerase(0%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_5(100%),ArfGap(100%),PH(100%) 10 6 16 151 236 ENST00000286175.12 ENST00000304032.13 upstream upstream duplicates(8),mismatches(5) CAG___...TTTTGAACCAACAGACCTCTGCTGGCATCTGCGAT?GCATTTTTCCTGTTTTAACAACGGCTGTGCTAGACGAAGTGGTGAAGCCCAA___AGACTTATTTTTGAGCTCGCTGTAAGACTGAGAAATCACGTAGTCCTTCCTGAAACCACTAAGAGGAAAAATG___TCTGTGACACTGCATACAGATGTAGGTGATATTAAAATTGAAGTCTTCTGTGAGAGGACACCCAAAACATGTGAG|GGCATGCTGTTGAAGCGAAGTGGCAAATCGTTGAATAAAGAGTGGAAAAAGAAATATGTCACCCTGTGTGACAATGGCGTGCTGACCTATCATCCCAGTTTACAT___GATTACATGCAGAATGTTCATGGTAAGGAGATTGACCTTCTGAGAACCACTGTGAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCTGCGCACCCATCTCCAGCCCTAAAACCAATGGCCTATCCAAG MSVTLHTDVGDIKIEVFCERTPKTCE|GMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKRPPRATSACAPISSPKTNGLS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20585 PPIL3::AGAP1 ENSG00000240344.10::ENSG00000157985.20 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1918 TRUE 3529 TRUE 1337 PPIL3 ENSG00000240344.10 protein_coding - - chr2:200870907-200889303:- chr2:200885698:- chr2:201735630-201754026:- chr2:201750421:- AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235852686:+ chr2:236402687-237040437:+ chr2:236761330:+ chr2:200885419,chr2:200885421 chr2:235830464,chr2:235830462 NA NA chr2:201750142,chr2:201750144 chr2:236739108,chr2:236739106 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(12%)|Ankyrin_repeats_(3_copies)(100%),Putative_GTPase_activating_protein_for_Arf(100%) Pro_isomerase(0%)|Ank(100%),Ank_2(100%),Ank_3(100%),Ank_5(100%),ArfGap(100%),PH(100%) 3 1 19 151 2 ENST00000706564.1 ENST00000409457.5 upstream upstream duplicates(5),mismatches(2) CTTGAGGTTGCCCAG___...CAA___AGACTTATTTTTGAGCTCGCTGTAAGACTGAGAAATCACGTAGTCCTTCCTGAAACCACTAAGAGGAAAAATG___TCTGTGACACTGCATACAGATGTAGGTGATATTAAAATTGAAGTCTTCTGTGAGAGGACACCCAAAACATGTGAG|GGCCTGCCCTTCTTTGTCCTTGCACTGACAGCCAGCACTTATCTCAGGCCTGCTGGAGCCCGTGCCCGTCAGTCCTCCC...GGGCCGAGGGGTGGTCAGACCAGCCCGCATTGTGCTGAAGGCCCACAATCAGCCCAGCTGTCCGGGGCCATGATGAATTAGCGGTGGGAGTTAACATAGAGGTGAACTCCAGATCGGCCGATAGCTTGCAG MSVTLHTDVGDIKIEVFCERTPKTCE|GLPFFVLALTASTYLRPAGARARQSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20590 ENSG00000287260::ZDHHC14 ENSG00000287260.2::ENSG00000175048.17 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 1919 FALSE NA FALSE NA ENSG00000287260 ENSG00000287260.2 lncRNA + + chr6:154510770-154522307:+ chr6:154510962:+ chr6:154831904-154843441:+ chr6:154832096:+ ZDHHC14 ENSG00000175048.17 protein_coding + + chr6:157381133-157678157:+ chr6:157542585:+ chr6:157802165-158099189:+ chr6:157963617:+ chr6:154511992 chr6:157413686 NA NA chr6:154833126 chr6:157834718 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |DHHC_palmitoyltransferase(100%) |DHHC(100%) 3 10 12 174 78 ENST00000658375.2 ENST00000359775.10 downstream upstream duplicates(9),low_entropy(1),mismatches(4) CCGCAGCGTCCCGGGCCCCGCTTTCCTTTTCAAGGGGCGGGTTGTAGATCGCGCGCGCACCCTGGAGAGCCCGCTGGTTTGTGTGAGGCCCTGGCCCTGTGGGTAGCAGAACACTCTGTCTCGCTGTGAGCAACAATACACTAAAAAAAAAAGAAAAGAAAAAAAAAA|CTGTCCGTACCTGGCGGTGAAAATCACCCCTGCCATCCCTGCAGTCGCTGGCATCCTGTTCTTCTTTGTGATGGGGACCCTGCTCCGCACCAGCTTCAGCG?CCCCGGAGTCCTCCCACGAGCCACGCCTGATGAAGCCGCCGATCTGGAAAGGCAAATAG___ATATCGCAAACGGCACCAGTTCAGGGGGGTACCGCCCGCCTCCCAGAACCAAAGAAGTCATCATCAATGGCCAGACCGTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20592 NBPF3::SCMH1-DT ENSG00000142794.19::ENSG00000235358.2 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3531 TRUE 1338 NBPF3 ENSG00000142794.19 protein_coding + + chr1:21440128-21485005:+ chr1:21479400:+ chr1:21766621-21811498:+ chr1:21805893:+ SCMH1-DT ENSG00000235358.2 lncRNA + + chr1:41242373-41284861:+ chr1:41259308:+ chr1:41708045-41750533:+ chr1:41724980:+ chr1:21480140,chr1:21479821,chr1:21480127 chr1:41251231,chr1:41251351,chr1:41251226 NA NA chr1:21806633,chr1:21806314,chr1:21806620 chr1:41716903,chr1:41717023,chr1:41716898 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Olduvai_domain(43%)| Olduvai(64%)| 4 4 5 96 24 ENST00000318249.10 unknown downstream upstream duplicates(2),mismatches(3) TCTGAAGAGGAGGAAGCCCCCCAGGAGTCCTGGGATGAAGGTGATTGGACTCTCTCAATTC?TCCTGACATGTCTGCCTCATACCAGTCTGACAGGAGCACCTTTCACTCAGTAGAGGAACAGCAAGTCGGCTTGGCTCTTGACATAGGCA___GACATTGGTGTGATCAAGTGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAG|GTAATGTGAAATGGTGAGACATGATTCCTCAGAGCTCTGTTATCCCACAAGTCTGTGTCTACCAGCCGCACAAGGAAAATCTTTCACGAGGTTCCTCTCAGTTCCTGTGGCAGACAGACTCTTGGGGAAGTTGCTCACCATCCCACCTGCTGATGTCATGGCTTTCTGTAATTCCTTCTGTTTGAG SEEEEAPQESWDEGDWTLSI?PDMSASYQSDRSTFHSVEEQQVGLALDIGRHWCDQVKKEDQEATSPr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20593 NBPF3::SCMH1-DT ENSG00000142794.19::ENSG00000235358.2 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3531 TRUE 1338 NBPF3 ENSG00000142794.19 protein_coding + + chr1:21440128-21485005:+ chr1:21479400:+ chr1:21766621-21811498:+ chr1:21805893:+ SCMH1-DT ENSG00000235358.2 lncRNA + + chr1:41242373-41284861:+ chr1:41260743:+ chr1:41708045-41750533:+ chr1:41726415:+ chr1:21480140,chr1:21479821,chr1:21480127 chr1:41251231,chr1:41251351,chr1:41251226 NA NA chr1:21806633,chr1:21806314,chr1:21806620 chr1:41716903,chr1:41717023,chr1:41716898 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Olduvai_domain(43%)| Olduvai(64%)| 0 1 1 96 15 ENST00000318249.10 ENST00000425554.1 downstream upstream none GTCGGCTTGGCTCTTGACATAGGCA___GACATTGGTGTGATCAAGTGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAG|GCCTTCAGACCTGAGCTGAAATCT...CAGGCTTTGGACTATACTTTGGGCTTTCCTGGGTCTCTTACCTGGCAGACAGCAGATTTTGGAACTTTTCAGCCTCCATAATCAT___TTCCCAGAAGAACCACAAAGCATAAATTTCCCCAAAAGGGGAATTTTGTTGATGGCTTTAGTCTATTCCCTCCTAAAAG VGLALDIGRHWCDQVKKEDQEATSPr|psdls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20594 NBPF3::ENSG00000287400 ENSG00000142794.19::ENSG00000287400.1 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBPF3 ENSG00000142794.19 protein_coding + + chr1:21440128-21485005:+ chr1:21479400:+ chr1:21766621-21811498:+ chr1:21805893:+ ENSG00000287400 ENSG00000287400.1 lncRNA + + chr1:41241772-41338644:+ chr1:41259308:+ chr1:41707444-41804316:+ chr1:41724980:+ chr1:21480140,chr1:21479821,chr1:21480127 chr1:41251231,chr1:41251351,chr1:41251226 NA NA chr1:21806633,chr1:21806314,chr1:21806620 chr1:41716903,chr1:41717023,chr1:41716898 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Olduvai_domain(43%)| Olduvai(64%)| 4 4 4 96 24 ENST00000318249.10 unknown downstream upstream duplicates(2),mismatches(3) TCTGAAGAGGAGGAAGCCCCCCAGGAGTCCTGGGATGAAGGTGATTGGACTCTCTCAATTC?TCCTGACATGTCTGCCTCATACCAGTCTGACAGGAGCACCTTTCACTCAGTAGAGGAACAGCAAGTCGGCTTGGCTCTTGACATAGGCA___GACATTGGTGTGATCAAGTGAAAAAGGAGGACCAAGAGGCCACAAGTCCCAG|GTAATGTGAAATGGTGAGACATGATTCCTCAGAGCTCTGTTATCCCACAAGTCTGTGTCTACCAGCCGCACAAGGAAAATCTTTCACGAGGTTCCTCTCAGTTCCTGTGGCAGACAGACTCTTGGGGAAGTTGCTCACCATCCCACCTGCTGATGTCATGGCTTTCTGTAATTCCTTCTGTTTGAG SEEEEAPQESWDEGDWTLSI?PDMSASYQSDRSTFHSVEEQQVGLALDIGRHWCDQVKKEDQEATSPr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20596 VPS13D::LINC01226 ENSG00000048707.15::ENSG00000284543.1 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12416827:+ chr1:12290087-12572099:+ chr1:12476880:+ LINC01226 ENSG00000284543.1 lncRNA + - chr1:31506226-31583306:+ chr1:31560290:- chr1:31971827-32048907:+ chr1:32025891:- chr1:12423653,chr1:12423651 chr1:31560750,chr1:31560749 NA NA chr1:12483706,chr1:12483704 chr1:32026351,chr1:32026350 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none N-terminal_region_of_Chorein_or_VPS13(100%),Repeating_coiled_region_of_VPS13(100%),SHR-binding_domain_of_vacuolar-sorting_associated_protein_13(100%),UBA/TS-N_domain(100%),Vacuolar-sorting-associated_13_protein_C-terminal(87%),Vacuolar_sorting-associated_protein_13__N-terminal(100%)| Chorein_N(100%),SHR-BD(100%),UBA(100%),VPS13(100%),VPS13_C(24%),VPS13_mid_rpt(100%)| 2 6 3 161 22 ENST00000620676.6 unknown downstream downstream duplicates(2),mismatches(1) AAAAATATGATGAAAACCTCCATGAAAAGACAGCTGAGCAAGGTGGAACACCAATTCGATACTACTTTGAAAATCTCAAAATCAGCATTCCTCAGATCAAG...AAGGAGTTCATCATCAATGATATCCTCAAACATTTCCAGGAG___GAACTCCTCAGCCAGGCAGCTCGAATCCTGGGATCAGTGGATTTTCTTGGCAATCCTATGGGGCTTTTGAATGATGTTTCTGAAGGGGTTACTGGACTGATAAAATATGGAAATGTCGGGGGCCTCATCAGAAATGTTACACACGGAGTATCAAACTCTGCTGCCAAG|AGATGGGGTTTGCCATGTTGCCTAGGCTGGTCTCGAATTCTGGGATTAAGCGATCCTCCTGCCTTGGCTGGGATTACAGGCATGGACCACTGCATCTGGCCAACTCTACTCTCTACTTGATTTTGCTGTGAACCTAAAACTGCTCTAAAAAAAAATGAAGTCTATTAATTCAAAAAGAATTTGCACCTAGACATATGTGGTGAAATAGCAGAATACCAAAGACAAAGAGAATATCTTAAAAACTGC KEFIINDILKHFQEELLSQAARILGSVDFLGNPMGLLNDVSEGVTGLIKYGNVGGLIRNVTHGVSNSAAK|rwglpcclgwsrilglsdppalagitgmdhciwptllst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20597 POU2F2::GSK3A ENSG00000028277.22::ENSG00000105723.13 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42099527:- chr19:42590262-42700737:- chr19:42603679:- GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42226421:- chr19:42730377-42746777:- chr19:42730573:- chr19:42098263 chr19:42228001 NA NA chr19:42602415 chr19:42732153 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none none none 1 2 6 61 139 ENST00000526831.2 ENST00000677025.1 upstream downstream duplicates(1) CTTGTCCCAACCCATCCAGCTCACAGCACAG___GACATACAGCAGCTCCTCCAGCTCCAGCAGCTGGTGCTTGTGCCAGGCCACCACCTCCAGCCACCTGCTCAGTTCCTGCTACCGCAGGCCCAGCAGAGCCAGCCAG___GCCTGCTACCG...CCCAGGGAGCTCTTCTGACCTCCCAGCCCCGGGCCGGGCTTCCCACACAG|CTGCGTCACACGAAGGCCGTGTCCAACTGCAAGAGCCCGCCTGCTTCACTGGCCCCCAGTGCAGCCTGGCACAGCTGCAGGGTGTCCTCAAGCGCCAGTGGCTGGGATGTCTCAATGATGGCGATGGTCTCCCCCAGCTCTGTGCACATGATAGTCTGTTGAGGCTCTGGAGGTGGGGGTGGGGCAGGAGATGGTGATCTGGGAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4323 chr19:42133445-42133513:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20607 PEX5::CD163L1 ENSG00000139197.11::ENSG00000177675.9 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PEX5 ENSG00000139197.11 protein_coding + + chr12:7188685-7218574:+ chr12:7199113:+ chr12:7341281-7371170:+ chr12:7351709:+ CD163L1 ENSG00000177675.9 protein_coding - + chr12:7346685-7479897:- chr12:7446187:+ chr12:7499281-7632493:- chr12:7598783:+ chr12:7199349,chr12:7199348,chr12:7199197 chr12:7440609,chr12:7440605,chr12:7440609 NA NA chr12:7351945,chr12:7351944,chr12:7351793 chr12:7593205,chr12:7593201,chr12:7593205 NA NA sense antisense stop-codon CDS/splice-site intron deletion/read-through/5'-5' medium none none none 4 1 7 168 15 ENST00000434354.6 unknown downstream upstream mismatches(1) CCCCGGAGCCCCGGCCTCTGAGGCAGTGAGTGTTCTTGAGGTGGAAAGCCCAGGTGCAGCCTCTGAGGCA___GCCTCCAAGCCTTTGGGAGTAGCTTCTGAAG...CTGAATTCCTGCAGGACCAGAATGCACCCCTTGTGTCCCGTGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCTGAGATGCAGCAGATTGAGCAGTCAAACTTCCGCCAGGCTCCCCAGAGAG___CCCCTGGTGTGGCAGACTTGGCCTTGTCTGAGAACTGGGCCCAGGAGTTTCTTGCAGCTGGAGATGCTGTGGATGTAACTCAGGATTATAATGAGACTGACTGGTCCCAAGAATTCATCTCTGAAGTTACAG___ACCCCTTGTCTGTGTCCCCTGCCCGCTGGGCTGAGGAATATTTGGAGCAATCAGAGGAGAAGCTGTGGCTGGGAGAACCTGAGGGAACAGCCACCGATCGCTG|AAGAAAGGCCACGTGAGGACACAGACAAAAAGTGGATGTCTAAAAGCCAGCAAGAGAGCCCTCACTAGAAACCAAATTTCCTGGTACCTTGATAATGAACTTCTAGCCTCCAGAAATGTGAAAAATAAATTTCTGTCATTTTTAAGTGACTCAGTCTACAGTACTTTGCTATGTTGATCCAAGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20609 RTRAF::CTNNA2 ENSG00000087302.9::ENSG00000066032.19 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RTRAF ENSG00000087302.9 protein_coding + + chr14:51989514-52010694:+ chr14:51991441:+ chr14:52456232-52477412:+ chr14:52458159:+ CTNNA2 ENSG00000066032.19 protein_coding + - chr2:79185231-80648861:+ chr2:80242304:- chr2:79412357-80875986:+ chr2:80469429:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none RNA_transcription__translation_and_transport_factor_protein(25%)| RLL(12%)| 4 0 1 1696 3 ENST00000557553.5 unknown downstream downstream duplicates(4) GCCTGCCCGCCCTCTCGCCGCGTCGCCGGTGCCTGCGCCTCCCGCTCCACCTCGCTTCTTCTCTCCCGGCCGAGGCCCGGGGGACCAGAGCGAGAAGCGGGGACCATGTTCCGACGCAAGTTGACGGCTCTCGACTACCACAACCCCGCCGGCTTCAACTGCAAAG___ATGAAACAGAATTTAGAAACTTCATCGTTTGGCTTGAAGACCAG...TTGAAGACAGAGGGAATTTAAGAAACATCCACAGCAGCGACTGGCCCAAGTTCTTTGAAAAG|GTTGTGCAAACAGCAAGAGTTATGCCACAGTGAACATCCTTGGATACAATAGCCTTTCAATCCAATGTCCATGAGAGAAAACACTCAATTCTCAAGTTCAGA EDRGNLRNIHSSDWPKFFEK|vvqtarvmpq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20635 FAM135B::STPG2 ENSG00000147724.12::ENSG00000163116.10 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM135B ENSG00000147724.12 protein_coding - - chr8:138130023-138497261:- chr8:138242993:- chr8:139142266-139509504:- chr8:139255236:- STPG2 ENSG00000163116.10 protein_coding - + chr4:97184093-98143476:- chr4:97814371:+ chr4:98105244-99064627:- chr4:98735522:+ chr8:138219322,chr8:138219329 chr4:97801858,chr4:97801851 NA NA chr8:139231565,chr8:139231572 chr4:98723009,chr4:98723002 NA NA sense antisense unknown CDS intron translocation/5'-5' low none Protein_FAM135_(100%)| DUF3657(100%)| 0 0 2 9 2 ENST00000395297.6 unknown upstream upstream mismappers(1) GTCCATGCTGCCCTGGTGGCTCTGCAGCAGCCATTGATCAG___TTTTACTCGTCCAGGAAGAGGCTCCTGGCTTGGTAAAGGTGGCCCAGACACCGGACAAGAACAGTCTATCATTTCT...|...CAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTACAACCTCTGCTTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCATCCAAGTAGCTGAGATTAAAG___TGATCTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE family with sequence similarity 135 member B 2 SCLC epithelial missense FALSE NA NA NA NA NA NA NA NA NA 20639 KIRREL3::DCPS ENSG00000149571.12::ENSG00000110063.10 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KIRREL3 ENSG00000149571.12 protein_coding - - chr11:126423358-127003460:- chr11:127000455:- chr11:126293253-126873355:- chr11:126870351:- DCPS ENSG00000110063.10 protein_coding + + chr11:126304060-126350005:+ chr11:126331405:+ chr11:126173955-126219900:+ chr11:126201300:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Scavenger_mRNA_decapping_enzyme_(DcpS)_N-terminal(20%),Scavenger_mRNA_decapping_enzyme_C-term_binding(100%) |DcpS(0%),DcpS_C(100%) 2 0 0 337 394 ENST00000525144.7 ENST00000263579.5 upstream upstream none CGGAGGCTGAGCACCGAGAGCCGCCAAGGAAGAGAAACTAACCACAGCCAAGTTACCCCGCCGGCTTTCCTTCGCTGCGCTAAGGAATGAAACCCTTCCAGCTCGATCTGCTCTTCGTCTGCTTCTTCCTCTTCAGTCAAG|ATGTAAAGACGACCGTGGTTTACCCTGCCACAGAGAAACACCTGCAGAAGTACCTGCGCCAGGACCTCCGCCTGATCCGAG MKPFQLDLLFVCFFLFSQ|dVKTTVVYPATEKHLQKYLRQDLRLIR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20653 MECOM::NAALADL2 ENSG00000085276.19::ENSG00000177694.16 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3537 TRUE 1339 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381187:- chr3:168801287-169381563:- chr3:169098975:- NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:175627291:+ chr3:174156363-175528336:+ chr3:175345079:+ chr3:169168635 chr3:175036559 NA NA chr3:168886423 chr3:174754349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none none 0 1 0 47 15 ENST00000651503.2 ENST00000454872.6 upstream upstream none GGGAGAGCAGAGGTCAAACCTGAAAGACCCCAGTTATGGATGGGAG|GGTCCAAGTTTTCTCTCCGAGGCCCGTTTTTCTACACGAGCAACAAAAATTGAAG...AAACAACCTTAAAG___GTGATCAACCCAACACTCATCAACTGTTAGCCATGGCGTcACGCCTGCGGGAGAGTGCTGAACTTTTTCAGTCTGATGAGATGCGAC GEQRSNLKDPSYGWE|GPSFLSEARFSTRATKIE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20654 MECOM::NAALADL2 ENSG00000085276.19::ENSG00000177694.16 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3537 TRUE 1339 MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169663336:- chr3:168801287-169381563:- chr3:169381124:- NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:175096790:+ chr3:174156363-175528336:+ chr3:174814580:+ chr3:169168635 chr3:175036559 NA NA chr3:168886423 chr3:174754349 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Peptidase_family_M28(100%) |Peptidase_M28(100%) 0 1 0 80 10 ENST00000651503.2 ENST00000454872.6 upstream upstream none AAAAGCCCCAACCACcCACCAGCGGCTGCAGGACTGGGCACAGCATGAGATCCAAAGGCAGGGCAAGGAAACTGGCCACAA|GTAAAAAGATGGCCTATCAGAAGGTCCATcCAGATCAAAGAGCTCCAGGcCACTCACAGTACTTAGACAATGATGACCTcCAAGCCACTGCCCTTGACTTAGAGTGGGACATG MRSKGRARKLAT|sKKMAYQKVHpDQRAPGHSQYLDNDDLQATALDLEWD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4789 chr3:175369540-175369621:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20655 ZFPM2::ZFPM2-AS1 ENSG00000169946.14::ENSG00000251003.9 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3538 TRUE 1340 ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105788924:+ chr8:105602961-106816767:+ chr8:106801152:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105689906:- chr8:106558317-107072752:- chr8:106702134:- chr8:105794258,chr8:105795335,chr8:105794247,chr8:105795256,chr8:105796543,chr8:105796143,chr8:105796544 chr8:105794247,chr8:105795256,chr8:105794258,chr8:105795335,chr8:105698930,chr8:105698484,chr8:105698924 NA NA chr8:106806486,chr8:106807563,chr8:106806475,chr8:106807484,chr8:106808771,chr8:106808371,chr8:106808772 chr8:106806475,chr8:106807484,chr8:106806486,chr8:106807563,chr8:106711158,chr8:106710712,chr8:106711152 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none none none 113 83 238 562 228 ENST00000407775.7 unknown downstream downstream duplicates(126),low_entropy(5),mismatches(16) GGGAGCATACTACAACTTGAGTAGGATATTTATTTTATTGACCACATTTTCAGCCTGTTGTGTTTTTCCAGTCATTTAAAGATTAATTG___GGGGTCAGCTTTGGTGTACAACTACGAAGGCCATCTCTGAGGGTGAAGAGCTAATTGCCTTTGTGGTGGATTTTGACTCAAGGCTACAAGCTGCCAGTCAGATGACTCTCACAGAAGGGATGTACCCTGCACGCCTGCTGGACTCAATTCAGCTGCTTCCTCAGCAAGCTGCCATGGCTTCTATTTTGCCCACAGCTATTGTCAATA|TCTGTATCCTCTAGATCATGGACAGCCTATTGATCCTTCTAACTCTGCAGCAAAGCCTCCAAGTTAAAAAGGAAAATAAGTCTCTCAACACCATTATTTATTCAGCTGCACACAGTCTTGAACTGCTGAAATATAAAAATGAAACCAAAGCAGTTTCCATCTAATCACTTTTTTAAAAAATGCCATGCAGAATATGTTTATCACAATCACCATCATCATCATCATCACCACTGCTGTTGCCACTGCATCACCATCCAACATGAACACCACCAACTTAAT gayynlsrifillttfsaccvfpvi*rliGGQLWCTTTKAISEGEELIAFVVDFDSRLQAASQMTLTEGMYPARLLDSIQLLPQQAAMASILPTAIVN|icil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20656 ZFPM2::ZFPM2-AS1 ENSG00000169946.14::ENSG00000251003.9 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3538 TRUE 1340 ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105788924:+ chr8:105602961-106816767:+ chr8:106801152:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105585833:- chr8:106558317-107072752:- chr8:106598061:- chr8:105796143,chr8:105796543,chr8:105796544,chr8:105794258,chr8:105795335,chr8:105794247,chr8:105795256 chr8:105698484,chr8:105698930,chr8:105698924,chr8:105794247,chr8:105795256,chr8:105794258,chr8:105795335 NA NA chr8:106808371,chr8:106808771,chr8:106808772,chr8:106806486,chr8:106807563,chr8:106806475,chr8:106807484 chr8:106710712,chr8:106711158,chr8:106711152,chr8:106806475,chr8:106807484,chr8:106806486,chr8:106807563 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 3 1 13 562 60 ENST00000407775.7 ENST00000647695.1 downstream downstream duplicates(6) CCACATTTTCAGCCTGTTGTGTTTTTCCAGTCATTTAAAGATTAATTG___GGGGTCAGCTTTGGTGTACAACTACGAAGGCCATCTCTGAGGGTGAAGAGCTAATTGCCTTTGTGGTGGATTTTGACTCAAGGCTACAAGCTGCCAGTCAGATGACTCTCACAGAAGGGATGTACCCTGCACGCCTGCTGGACTCAATTCAGCTGCTTCCTCAGCAAGCTGCCATGGCTTCTATTTTGCCCACAGCTATTGTCAATA|ACAGAGTCTTGCTCTAGATGTCTCCAAGACTGGAGTGCAACGGCATGATCGTAGCTCACTGCAACCTCAAACTCCTGGGGTCAAGCAATCCTCCCACATGTTAGGTACTATATTACTATACTATATTTCCTCTATTTATAACTAATAAT...CTAATTGCCTACTGTATAGTAATTGCACATTTATTTGTCTGTATTTGTCACTAGAATATAATCTCCAGGATAGCAACACCAATGTCTATTTCAAGTACACGGCAACATCTTACATTGTGTCTGGCACT tfsaccvfpvi*rliGGQLWCTTTKAISEGEELIAFVVDFDSRLQAASQMTLTEGMYPARLLDSIQLLPQQAAMASILPTAIVN|nrvll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20662 ZNF398::ZFPM2 ENSG00000197024.9::ENSG00000169946.14 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF398 ENSG00000197024.9 protein_coding + + chr7:149126416-149183042:+ chr7:149154340:+ chr7:148823508-148880134:+ chr7:148851432:+ ZFPM2 ENSG00000169946.14 protein_coding + - chr8:104590733-105804539:+ chr8:105426953:- chr8:105602961-106816767:+ chr8:106439181:- chr7:149162431,chr7:149162430 chr8:105441875,chr8:105442104 NA NA chr7:148859523,chr7:148859522 chr8:106454103,chr8:106454332 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Zinc_finger_protein_(100%)| none 13 10 23 218 85 ENST00000475153.6 unknown downstream downstream duplicates(6),mismappers(15),mismatches(7) GCCGCCGTGCAGGCTATAGAGAGGAAGGTGGAGATCCACAGCCGGCGACTCCTACACCTaGAAGGTCGGACAGGGACAGCAGAGAAGAAACTAGCCAGCTGTGAAAAGACAGTTACCGAGCTTGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGAACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACCTGCTGCGCAACAGGAACTTCTGGATCCTGCGGCTCCCTCCAGGTATTAAGGGAGATATCCCAAAG|GTGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTGGGCTCATGGCAACCTCCTCTTCCCGTGTTCAAACAATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGCGTGTACCACTGCCTGTATTTTTTGTATTTTTTGTATTTTTTGTATTTTTAGAGATGGGATTTCACCATGTTGACCAGGCTGGTCTCAAACTCCTGACCTCTTGATCTGCTAGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCGCCCCG AAVQAIERKVEIHSRRLLHLEGRTGTAEKKLASCEKTVTELGNQLEGKWAVLGTLLQEYGLLQRRLENLENLLRNRNFWILRLPPGIKGDIPK|veshsvtqagvqwhdlgswqpplpvfkqfsclslqsswdyrrvplpvffvffvffvflemgfhhvdqaglkllts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20663 PIP5K1A::POGZ ENSG00000143398.20::ENSG00000143442.24 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIP5K1A ENSG00000143398.20 protein_coding + - chr1:151197949-151249536:+ chr1:151245421:- chr1:151170425-151222012:+ chr1:151217897:- POGZ ENSG00000143442.24 protein_coding - - chr1:151402724-151459494:- chr1:151412396:- chr1:151375200-151431970:- chr1:151384872:- chr1:151244443,chr1:151244102,chr1:151244525,chr1:151244501 chr1:151419145,chr1:151419148,chr1:151419198,chr1:151419494 NA NA chr1:151216919,chr1:151216578,chr1:151217001,chr1:151216977 chr1:151391621,chr1:151391624,chr1:151391674,chr1:151391970 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |DDE_superfamily_endonuclease(100%),Tc5_transposase_DNA-binding_domain(100%) |DDE_1(100%),HTH_Tnp_Tc5(100%) 8 15 20 93 707 unknown ENST00000271715.7 upstream downstream duplicates(17),mismatches(3) AGAATtGCTTGAACCcGGGAGGCGGAAGTTGCAATGAACCAAGATAGTGCCACTACATTCTAGCCTGGGTGACAGAGGGAGACCCTGTTGGCAGAGACTGCAGTGAACCAAGATCGTGCCACTGTACTCCAGCCTGGGCAACAGAGTGAGACTCCATCTCGAAAAACAAAATCAAAACAAAACAAAACATTGGGGGTGGCTTGGAGGAGCATTTTAGTGAAAAG|CCAAGTGCAAGATCTGTGAATGGGCGTTTGAAAGTGAGCCACTATTTCTCCAGCATATGAAGGATACTCATAAGCCTGGAGAGATGCCTTATGTTTGCCAG___GTGTGTCAATATCGCTCCTCACTCTACTCTGAGGTAGATGTCCATTTTCGGATGATCCATGAGGATACCCGGCATCTGCTCTGCCCTTATTGCCTGAAGGTCTTCAAAAATGGCAATGCATTCCAACAGCATTACATGAGGCACCAG___AAGAGAAATGTTTATCACTGCAACAAATGCCGGCTGCAGTTTCTCTTTGCCAAGGACAAAATTGAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20664 ZFPM2::CASC11 ENSG00000169946.14::ENSG00000249375.8 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105634357:+ chr8:105602961-106816767:+ chr8:106646585:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 9 3 185 63 ENST00000407775.7 ENST00000672942.1 downstream downstream duplicates(3) AAGACAAAGGCTCAGGTCCCAATGGTGCTGACTGCTGGTCCCAAGTGGTTGCTGGATGTGACTTGGCAAGGAGTGGAAGACAACAAAAACAACTGCATTGTGTACAGCAAAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAAC...___AGACACAAAAGGGAAGATTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCCCCGACCCCAACACCTTCTTTGAACATCTCTTTCTCCACCTCTCAAAAAATTTCCTACTGAGTTGGTCCTCTAGTGAAAA KTKAQVPMVLTAGPKWLLDVTWQGVEDNKNNCIVYSK|gwlqkvrrkrsywrkkwfrgdys NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20665 MINDY4::CREB5 ENSG00000106125.14::ENSG00000146592.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MINDY4 ENSG00000106125.14 protein_coding + + chr7:30771417-30892387:+ chr7:30791574:+ chr7:30811033-30932002:+ chr7:30831190:+ CREB5 ENSG00000146592.17 protein_coding + + chr7:28299321-28825894:+ chr7:28658402:+ chr7:28338940-28865511:+ chr7:28698019:+ chr7:30798399,chr7:30798396 chr7:28652548,chr7:28652542 NA NA chr7:30838015,chr7:30838012 chr7:28692165,chr7:28692159 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none |bZIP_transcription_factor(100%) |bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%) 5 0 5 227 4 ENST00000265299.6 unknown downstream upstream duplicates(2),mismatches(1) ACGGTCCTCACCGTCAAGCAGCTCCACCCAACCCCAAGAAGAGAGCCGGAAGGTCCCTGAGCTCTTTGTCTGCACCCAACAGGACATTCTGGCTTCGAGCAACAGCTCCCCCTCCAGGACCTCCCTGGGTCAGCTTAGTGAACTGACCGTAGAAAGGC...CTGCCAGCAGCCCTCCCCATCTGCCCAGCAAACGGCTGCCCCCATGGGACAGGGCCAGGCCGAGGGATCCCTCCGAGGACACCCCAGCAGTGGACGGCAGCACAGACAtGGACAGGATGCCCTTGAAGCTCTACTTGCCTGGTGGTAATTCCAGGATGACCCAGGAGAGGCTGGAAAGAGCGTTCAAACGGCAGGGCAGCCAGCCCGCACCTGTCAG|GCTTTGTTGTTAGATCGACTCTTATTTGGAGTTTCACGCAGGCTGGAGATGCTTAACAGTGGTGAAGGAGGCAAGAGTTTCT...ATTATCTTCATTGCAAGAGAAGCCAGTCCCTGCAGCTGCACTGGGGAGCTCAGGCATCCCAGAACAAAGCACGTCTGCtCTCATGCACACAGAAACGTGAG ASSPPHLPSKRLPPWDRARPRDPSEDTPAVDGSTDmDRMPLKLYLPGGNSRMTQERLERAFKRQGSQPAPVr|lcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20666 INMT-MINDY4::CREB5 ENSG00000254959.6::ENSG00000146592.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA INMT-MINDY4 ENSG00000254959.6 protein_coding + + chr7:30752137-30892081:+ chr7:30791574:+ chr7:30791753-30931696:+ chr7:30831190:+ CREB5 ENSG00000146592.17 protein_coding + + chr7:28299321-28825894:+ chr7:28658402:+ chr7:28338940-28865511:+ chr7:28698019:+ chr7:30798399,chr7:30798396 chr7:28652548,chr7:28652542 NA NA chr7:30838015,chr7:30838012 chr7:28692165,chr7:28692159 NA NA sense sense unknown 3'UTR/splice-site intron duplication high none |bZIP_transcription_factor(100%) NNMT_PNMT_TEMT(100%)|bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%) 5 0 5 227 4 ENST00000458257.5 unknown downstream upstream duplicates(2),mismatches(1) ACGGTCCTCACCGTCAAGCAGCTCCACCCAACCCCAAGAAGAGAGCCGGAAGGTCCCTGAGCTCTTTGTCTGCACCCAACAGGACATTCTGGCTTCGAGCAACAGCTCCCCCTCCAGGACCTCCCTGGGTCAGCTTAGTGAACTGACCGTAGAAAGGC...CTGCCAGCAGCCCTCCCCATCTGCCCAGCAAACGGCTGCCCCCATGGGACAGGGCCAGGCCGAGGGATCCCTCCGAGGACACCCCAGCAGTGGACGGCAGCACAGACAtGGACAGGATGCCCTTGAAGCTCTACTTGCCTGGTGGTAATTCCAGGATGACCCAGGAGAGGCTGGAAAGAGCGTTCAAACGGCAGGGCAGCCAGCCCGCACCTGTCAG|GCTTTGTTGTTAGATCGACTCTTATTTGGAGTTTCACGCAGGCTGGAGATGCTTAACAGTGGTGAAGGAGGCAAGAGTTTCT...ATTATCTTCATTGCAAGAGAAGCCAGTCCCTGCAGCTGCACTGGGGAGCTCAGGCATCCCAGAACAAAGCACGTCTGCtCTCATGCACACAGAAACGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20670 PDIA4::ZFPM2 ENSG00000155660.11::ENSG00000169946.14 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3540 FALSE NA PDIA4 ENSG00000155660.11 protein_coding - - chr7:149003062-149028662:- chr7:149011846:- chr7:148700154-148725754:- chr7:148708938:- ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105798724:+ chr8:105602961-106816767:+ chr8:106810952:+ chr7:149006450,chr7:149006456 chr8:105635288,chr8:105635282 NA NA chr7:148703542,chr7:148703548 chr8:106647516,chr8:106647510 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Thioredoxin(65%),Thioredoxin-like_domain(7%)|Zinc-finger_of_C2H2_type(100%) Calsequestrin(10%),Thioredoxin(97%),Thioredoxin_6(0%)|zf-met(100%) 1 0 1 3181 124 ENST00000286091.9 ENST00000407775.7 upstream upstream duplicates(1) CCGCCAAGGAGCTCAGCAAGCGTTCTCCTCCAATTCCCCTGGCAAAGGTCGACGCCgCCGCAGAAACAGACCTGGCCAAGAGGTTTGATGTCTCTGGCTAT...TCCAGGAGTTCCTGAAGGATGGAGACGATGTCATCATCATCGGGGTCTTTAAGGGGGAGAGTGACCCAGCCTACCAGCAATACCAGGATGCCG|AGGATATATTCCCTTGCAAGTCCTGTGGCATCTGGTATCGGAGTGAGC...CTGCTCCGGTGTCAGAGGAAAATGAAGACAGTGCCCATCAGATTTCCAGCCTGTGCCCCTTCCCACAGTGCACCAAGAGCTTTTCAAATGCTCGAGCTC QEFLKDGDDVIIIGVFKGESDPAYQQYQDA|eDIFPCKSCGIWYRSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20673 PPT1::CTXND2 ENSG00000131238.18::ENSG00000283324.1 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- CTXND2 ENSG00000283324.1 protein_coding + + chr1:150887136-150913292:+ chr1:150912242:+ chr1:150859612-150885768:+ chr1:150884718:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none Palmitoyl_protein_thioesterase(61%)|Cortexin_of_kidney(100%) Palm_thioest(33%)|Cortexin(100%) 6 2 2 19124 21 ENST00000642050.2 ENST00000636087.1 upstream upstream duplicates(4),mismatches(1) AGAACAGCTTCTTCTTGAATGTCAATTCCCAAGTAACAACAGTGTGTCAGGCACTTGCTAAGGATCCTAAATTGCAGCAAGGCTACAATGCTATGGGATTCTCCCAGGGAGGCCAATTTCT___GAGGGCAGTGGCTCAGAGATGCCCTTCACCTCCCATGATCAATCTGATCTCGGTTGGGGGACAACATCAAG___GTGTTTTTGGACTCCCTCGATGCCCAGGAGAGAGCTCTCACATCTGTGACTTCATCCGAAAAACACTGAATGCTGGGGCGTACTCCAAAGTTGTTCAGGAACG|GAATATGACAAATCTGAAGCTATACCTGAGGAATTAGCTGGAGCTGGACAACAGTAACGAGGTGCAAGTCCCCATGGAAGATTCAAGCCTGTCCAGTGGTGTTGATGTGGACAAAGGCTTTGCCATTGCCTTTGTTGTTCTTCTGTTTCTGTTCCTAATAGTGATGATTTTTCGGTGTGCCAAGCTGGTGAAGAATCCCTACAAGGCCAGCTCCACAACCACAGAACCATCTCTG NSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQEr|nmtnlklylrn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20674 SCMH1::FOXO6 ENSG00000010803.17::ENSG00000204060.8 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 1923 FALSE NA FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- FOXO6 ENSG00000204060.8 protein_coding + + chr1:41361922-41383590:+ chr1:41381616:+ chr1:41827594-41849262:+ chr1:41847288:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none none |FOXO-TAD(100%),Forkhead(0%) 0 9 1 2011 4591 ENST00000695335.1 ENST00000641094.2 upstream upstream duplicates(1),mismatches(2) GCCGCCCGCCCGCCCCCTTCCCGCGTCTCCGCTCCCTCCCTGCGCAGCGGAAACATGGCGGCGGGAAGgGAGTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG|AACTCCATCCGGCACAACCTGTCGCTGCACACCCGTTTCATCCGCGTGCAGAACGAGGGCACCGGCAAGAGTTCGTGGTGGATGCTGAACCCCGAGGGCGGAAAGACAGGGAAGACCCCGCGGCGCAGGGCCGTGTCCATGGACAACGGGGCCAAGTTCCTGCGCATCAAGGGCAAGGCGAGCAAGAAGAAGCAGCTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20675 SMAP2::RFX5 ENSG00000084070.12::ENSG00000143390.18 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40417096:+ chr1:40810522-40888998:+ chr1:40882768:+ RFX5 ENSG00000143390.18 protein_coding - - chr1:151340640-151347326:- chr1:151345188:- chr1:151313116-151319802:- chr1:151317664:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Putative_GTPase_activating_protein_for_Arf(100%)|RFX5_DNA-binding_domain(100%),RFX5_N-terminal_domain(61%),RFX_DNA-binding_domain(100%) ArfGap(100%)|AT_hook(100%),Pox_D5(100%),RFX5_DNA_bdg(100%),RFX5_N(25%),RFX_DNA_binding(100%) 3 1 4 2775 4199 ENST00000372718.8 ENST00000452671.7 downstream downstream duplicates(2) CCACCAGTAGGCATGGTTGCTCAGCCAGGAGCTTCTGGGATGGTTGCCCCCATGGCCATGCCTGCAGGCTATATGGGTGGCATGCAGGCATCAATGATGGGTGTGCCGAATGGAATGATGACCACCCAGCAGGCTGGCTACATGGCAGGCATGGCAGCTATGCCCCAGACTGTGTATGGGGgCCAGCCAGCTCAGCAGCTGCAATGGAACCTTACTCAG|CAAGATGTACAGAAATTTTCTGACAATGACAAGCTGTATCTCTACCTTCAGCTCCCCTCAGGACCCACCACTGGAGACAAAAG___CTCAGAGCCAAGTACACTGAGCAATG...TATCG___GAAGTACTGTGAGAGTCTTGCCTGTTGCCGCCCACTCAGCACAGCCAACTTTGGCAAGATCATCAGAGAGATCTTCCCTGACATCAAAGCTCGAAG PPVGMVAQPGASGMVAPMAMPAGYMGGMQASMMGVPNGMMTTQQAGYMAGMAAMPQTVYGgQPAQQLQWNLTQ|QDVQKFSDNDKLYLYLQLPSGPTTGDKSSEPSTLSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20676 ZFPM2::ZFPM2-AS1 ENSG00000169946.14::ENSG00000251003.9 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3538 TRUE 1340 ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105602091:+ chr8:105602961-106816767:+ chr8:106614319:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105787596:- chr8:106558317-107072752:- chr8:106799824:- chr8:105794247,chr8:105795256,chr8:105794258,chr8:105795335,chr8:105698930,chr8:105698484,chr8:105698924 chr8:105794258,chr8:105795335,chr8:105794247,chr8:105795256,chr8:105796543,chr8:105796143,chr8:105796544 NA NA chr8:106806475,chr8:106807484,chr8:106806486,chr8:106807563,chr8:106711158,chr8:106710712,chr8:106711152 chr8:106806486,chr8:106807563,chr8:106806475,chr8:106807484,chr8:106808771,chr8:106808371,chr8:106808772 NA NA sense sense unknown intron exon/splice-site inversion medium none none none 2 1 4 44 53 unknown ENST00000520594.5 downstream downstream duplicates(3) GACCAAATGACACAGAGAATTCTGAGGATTTGCAGAAAGTCACACAGTTGATGtTGGTGCCTGCATTAGAGACCTGGGCCACTCTATTTCATGGGGGCACG...GAATCAGCTTAAAGAAAAGGATAAATTTATTTATTAGAATTGCAGAGTATTTTATGGATACCAAGGGCAGGAATTCACTGGGCCTCAAGATTTATTAGTACTGAAGATTCAGAAACCCTCAGGACGCCTTCAACATTTGTTATGGCCTCTGATTTCTCCAAGTTGGCTTCATTCTCCTTCCTCTCACGTCCAACTGCTCCTTCAGTAGACAGAAGCTTTGAACTTGATAGCTCATACTTGCATCTACCA|AGCTCATGGTTTTTAAACAACTTGTGGTAAAAATCTGGTGGAAAAGATAACAACAGTATATGATATGGCAGAGTTGCACAGAAGAATCAGAACATTGTTTTAGAGAAACGTTGGGCAATTAATTAAGCCAGCTGATTAAGTTTTAAAG___GAGGAAGATGGAACTTGGAGAAGACATACAGGCTGAAGAAAAAAAAATATTTTGGAAGTGATCA...GGTATCTCAACATTTAGGAAGTGTGCAGAGAAGATGAGATCATTAAAATGTACCAAGAGGTTATATTTAAATGTTAGAGGGAAATCAAAAGAATGGCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20678 SCMH1::ENSG00000254366 ENSG00000010803.17::ENSG00000254366.7 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3541 FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41116922:- chr1:41492874-41707978:- chr1:41582594:- ENSG00000254366 ENSG00000254366.7 lncRNA + + chr8:77399072-77537290:+ chr8:77505782:+ chr8:78311308-78449526:+ chr8:78418018:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none mbt_repeat(50%)| MBT(99%)| 1 1 4 2825 4 ENST00000695335.1 ENST00000518706.6 upstream upstream none CAAAAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTATTGGGAACTGTGAAAAGAATGGGGGTATGCTACAGCCACCTCTTG___GATTTCGGCTGAATGCGTCTTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTTTCCACAAG|TTTGATGGAGAGACTCAAATTAACAAAGAACTGTGGAATATTTCTAGCCAAAAGCCACTGGGGAACTGATTCCTGCCAACAACCACTGAACTTCGAAGTAGATCCATCAGCAACTGGACCCTCAGATGCGACCCATGTATGACACCTTGATTGGGATCCTGTGAGAGACCCTCAGGCAGAGCACCTAGTTAAGTCAAACTCAGATCGCTGACTCCCAGAAACTGTAAG___CACTCTCCTGCATACCTGTCACCAAACCTCCAGGTCAATCTCACATTTACTCTTGAAGAAAT KNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHK|fdgetqinkelwnissqkplgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20680 PABPC4::ZFPM2 ENSG00000090621.15::ENSG00000169946.14 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PABPC4 ENSG00000090621.15 protein_coding - - chr1:39560709-39576790:- chr1:39575759:- chr1:40026381-40042462:- chr1:40041431:- ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105634246:+ chr8:105602961-106816767:+ chr8:106646474:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(19%)|Zinc-finger_of_C2H2_type(100%) RRM_1(1%)|zf-met(100%) 2 1 2 31235 169 ENST00000372858.8 ENST00000407775.7 upstream upstream duplicates(3),multimappers(1) CCGATAAGAAGTCCTCCTGGCGGGGCTCGGGGTGGTGGGGGGCGGGGAGATGAACGCTGCGGCCAGCAGCTACCCCATGGCCTCCCTGTACGTGGGCGACCTGCATTCGGACGTCACCGAGGCCATGCTGTACGAAAAGTTCAGCCCCGCGGGGCCTGTGCTGTCCATCCGGGTCTGCCGCGATATGATCACCCGCCGCTCCCTGGGCTATGCCTACGTCAACTTCCAGCAGCCGGCCGACG|AAGACAAAGGCTCAGGTCCCAATGGTGCTGACTGCTGGTCCCAAGTGGTTGCTGGATGTGACTTGGCAAGGAGTGGAAGACAACAAAAACAACTGCATTGTGTACAGCAAAGGTAAATGCAAGATTGTTTCCCTCTCTCTTTGGAAGTATTAAAACCTGAGCATTGCAAAACAGCACCAGAAGAGCTGGAAcGGAAG...GTGTATTTTCAGTAAAGCCACCTGTTTTTCTTTTTTTTCTGTACAACATGAAACAAAAAGTGACATACCATTAATTTACTTAGTGCCT[gcct]TATACATTT MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD|edkgsgpngadcwsqvvagcdlarsgrqqkqlhcvqqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20682 SCMH1::CASC11 ENSG00000010803.17::ENSG00000249375.8 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 4 0 2011 8 ENST00000695335.1 ENST00000519071.6 upstream downstream duplicates(1) CGGGAAGgGAGTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG|GAGATCCCCAGAGGCAATTGTCCACCTGACTTCAGAATCAGAAGTAGCTCTGCTTTTCCTGAGAAGTGGTGCGGGTTTT...CTGCTGGTACAAAATTGAGAGTTGAGAGCCAAAACTGTACCCTTATCACCTGTCAGTAACTTAAG___GAGGAAGTCAGCTACCATGCCTCCAGGACACTCAAGTAACCCCATGGAGATGACATTGCAGAGAAGAACTGGTCGAAAGCCAGTACCCACTTTGCCATCgGTGTGAACAATCCACCTTTGAGTGGGTCCTCCAGCCCACATCAAGCCTTCATATAACAGCAGTCCTGAAGGACATTTTATTGTAACCTCGTGAAAATCGAAGTAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20686 MACF1::KCNQ4 ENSG00000127603.32::ENSG00000117013.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3542 TRUE 1341 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39269720:+ chr1:39546988-39952849:+ chr1:39735392:+ KCNQ4 ENSG00000117013.17 protein_coding + + chr1:40783787-40840452:+ chr1:40831084:+ chr1:41249459-41306124:+ chr1:41296756:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Calponin_homology_(CH)_domain(56%)|KCNQ_voltage-gated_potassium_channel(100%) CH(96%)|KCNQ_channel(100%) 1 0 1 121 323 ENST00000496804.5 ENST00000347132.10 downstream upstream none CTACTTCTCAGAGTGATTTGTCCATCAGTGGTGTGACTGTGAGCATTTTGCCCTCCTCCTCTGGCTATGGCAGTGATGGGCCACACATACATGGGATCCAG...CTCTACTTCCTTCTCAGAAGAGGATGGCACTCTTTCTCTGGAGGCAAGCCACACCCCATCATGGGGTCTGGAAGAG|CAGCCGGATGGGCATCAAAGACCG STSFSEEDGTLSLEASHTPSWGLEE|qpdghqr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20687 MACF1::KCNQ4 ENSG00000127603.32::ENSG00000117013.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3542 TRUE 1341 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39084438:+ chr1:39546988-39952849:+ chr1:39550110:+ KCNQ4 ENSG00000117013.17 protein_coding + + chr1:40783787-40840452:+ chr1:40817265:+ chr1:41249459-41306124:+ chr1:41282937:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |Ion_transport_protein(97%),KCNQ_voltage-gated_potassium_channel(100%) |Ion_trans(8%),Ion_trans_2(100%),KCNQ_channel(100%) 0 1 0 29 168 ENST00000361689.7 ENST00000347132.10 downstream upstream none AAAAAGCGGAAAAGCCAGGATTCGGTGCTGGACCCTGCAGAGCGTGCTGTGGTCAGAGTCGCTG|ATTTTTGCTGGTCTTCAGCTGCCTGGTGCTGTCTGTG...TTGGAGTACATCGTCCGGGTCTGGTCCGCCGGATGCTGCTGCCGCTACCGAGGATGGCAGGGTCGCTTCCGCTTTGCCAGAAAGCCCTTCTGTGTCATCGG KKRKSQDSVLDPAERAVVRVA|dfcwssaawccl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20688 MACF1::KCNQ4 ENSG00000127603.32::ENSG00000117013.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3542 TRUE 1341 MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39231243:+ chr1:39546988-39952849:+ chr1:39696915:+ KCNQ4 ENSG00000117013.17 protein_coding + + chr1:40783787-40840452:+ chr1:40817265:+ chr1:41249459-41306124:+ chr1:41282937:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Calponin_homology_(CH)_domain(6%)|Ion_transport_protein(97%),KCNQ_voltage-gated_potassium_channel(100%) CH(0%)|Ion_trans(8%),Ion_trans_2(100%),KCNQ_channel(100%) 0 1 0 719 168 ENST00000361689.7 ENST00000347132.10 downstream upstream none CGGGACCGGGTTCAGAAGAAAACGTTCACCAAGTGGGTCAACAAGCACTTAATGAAG|ATTTTTGCTGGTCTTCAGCTGCCTGGTGCTGTCTGTGCTGTCCA...GTCGCTTCCGCTTTGCCAGAAAGCCCTTCTGTGTCATCG___ACTTCATCGTGTTCGTGGCCTCGGTGtCCGTCATCGCCGCGGGTACCCAGGGCAACATCTTC RDRVQKKTFTKWVNKHLMK|ifaglqlpgavcav NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20696 SCMH1::PPIE ENSG00000010803.17::ENSG00000084072.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3543 TRUE 1342 SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39735468:+ chr1:40157854-40229586:+ chr1:40201140:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |Pro_isomerase(100%),RRM_1(100%),RRM_5(100%),TGF_beta(100%) 0 3 0 2011 7 ENST00000695335.1 ENST00000470018.5 upstream upstream none GCGGAAACATGGCGGCGGGAAGgGAGTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG|GCACCCCAGCCTGCTGTCCATGTGCAGGCCAGGAACCCCTGACTGCCTCCATGCTGGCGGCAGCACTTTCCCAAGAACAGAAGCAGGTGCTGAGTGAGTGACCCACGCGCCTACGAAAGAAGAGAGGGCCAGAAGCTGGTGCTGACGCAGAC...GACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGGAGACATCACAGATATTCAGATTCCTCTGGATTATGAAACAG___AAAAG...CAGAGACCCAGGAG___GGAGAGCCCATTGCTAAAAAGGCCCGCTCAAATCCTCAGGTGTACATGGACATCAAGATTGGGAACAAGCCGGCTGGCCGCATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20697 SCMH1::PPIE ENSG00000010803.17::ENSG00000084072.17 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3543 TRUE 1342 SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39740165:+ chr1:40157854-40229586:+ chr1:40205837:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(95%) |Pro_isomerase(100%),RRM_1(71%),RRM_5(74%),TGF_beta(100%) 0 3 0 2011 15663 ENST00000695335.1 ENST00000356511.6 upstream upstream none GTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG|GTGGACTGGCAGAGGAAGTGGACGACAAAGTTCTTCATGCTGCGTTCATTCCTTTTGGAGACATCACAGATA...TTTTGTTGAATTTGAGTTGGCAGAG___GATGCTGCAGCAGCTATCGACAACATG___AATGAATCTGAGCTTTTTGGACGTACAATTCGTGTCAATTTGGCCAAACCAATGAGAATTAAGGAAGGCTCTTCCAGGCCAG___TTTGGTCAGATGATGACTGGTTGAAGAAGTTTTCTGGGAAGACGCTTGAAGAGAATAAAGAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20707 MIR3659HG::SMAP2 ENSG00000224592.5::ENSG00000084070.12 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR3659HG ENSG00000224592.5 lncRNA + + chr1:38047314-38119025:+ chr1:38047614:+ chr1:38512986-38584697:+ chr1:38513286:+ SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40362300:+ chr1:40810522-40888998:+ chr1:40827972:+ chr1:38067440 chr1:40355653 NA NA chr1:38533112 chr1:40821325 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site deletion low none |Putative_GTPase_activating_protein_for_Arf(100%) |ArfGap(100%) 0 2 0 91 6 ENST00000428151.1 ENST00000435168.6 downstream upstream none TCTGGCTTCACGCCTCGCGCGGGCACACCTTCTCCCGGGCACTGAGGCCCAG|CTGGTGTGCAGAGAAGCCAGGTTGATGCCATCTATCAAAGTTGTCTCTTAGACCTCAGAGCCAGTTGAAGGGCTGAGAGAGGATGTGGAAGCCAATGGAACACAGCCAGCGCAGGAGGCAAGATTTTGAAATCTATG___GGCCGCGATGGGCCTCTTGGAACATTGGTGTGTTCATCTGCATTCGATGTGCTGGAATCCACAGGAATCTGGGGGTGCACATATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20710 SCMH1::ENSG00000273637 ENSG00000010803.17::ENSG00000273637.1 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41151614:- chr1:41492874-41707978:- chr1:41617286:- ENSG00000273637 ENSG00000273637.1 lncRNA - - chr1:38839333-38874494:- chr1:38846087:- chr1:39305005-39340166:- chr1:39311759:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none none none 1 0 1 2563 2512 ENST00000695335.1 ENST00000622355.1 upstream downstream duplicates(1) GAAATTAGCATACAAAGAAACTGACTTGTCAGAAGTCAGAGCAAGGTATTGGTGGATCCAGGGATAAATCCCAAACTTCTTAACCCCTAGACCGGTTTTTA...TACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCTTCAAGCAG|GTTAAAGGAAGATGGAAGTGGAAGTGCTTATGACAAAGAATCTATGGCAA YLKETCSVPAPVHCFKQ|vkgrwkwkcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20719 ARNT::ZFPM2 ENSG00000143437.21::ENSG00000169946.14 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3547 FALSE NA ARNT ENSG00000143437.21 protein_coding - - chr1:150809713-150876708:- chr1:150876543:- chr1:150782189-150849184:- chr1:150849019:- ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105798724:+ chr8:105602961-106816767:+ chr8:106810952:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none |Zinc-finger_of_C2H2_type(100%) |zf-met(100%) 0 1 0 1348 124 ENST00000358595.10 ENST00000407775.7 upstream upstream duplicates(1) GCGACTACTGCCAACCCCG|AGGATATATTCCCTTGCAAGTCCTGTGGCATCTGGTATCGGAGTGAGCGGAATCTGCAGGCCCATTTGATGTACTACTGCAG...TGGTGCTAGTCTAAAATGCACCGTCTGTAGCTACACTGCTGATTCCGTGATCAACTTTCACCAACACCTGTTCTCCCATCTCACTCAAGCTGCCTTCCGA ATTANP|eDIFPCKSCGIWYRSERNLQAHLMYYC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE aryl hydrocarbon receptor nuclear translocator 1 Yes AML leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20721 SCMH1::GOLPH3L ENSG00000010803.17::ENSG00000143457.11 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3548 FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- GOLPH3L ENSG00000143457.11 protein_coding - - chr1:150646230-150697154:- chr1:150648748:- chr1:150618706-150669630:- chr1:150621224:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(54%) |GPP34(0%) 0 1 0 2011 2790 ENST00000695335.1 ENST00000271732.8 upstream downstream none GAcACATGaCGGCGGGAAGgGAGTGAGCCGCCCCGCGCCCCCGCCGCGCCCTCAG|GTGAGACCTGGAACCCCTTCAAATTACAGTACCAGCTGAGAAATGT...CTCATCCAGTGACCAATACAACAGAGAAACAGCGACTAGTGAAAAAACTTCAAGATAGTGTACTAGAGCGGTGGGTAAATGACCCTCAGCGTATGGACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20726 PDAP1::SEL1L2 ENSG00000106244.13::ENSG00000101251.13 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1924 FALSE NA FALSE NA PDAP1 ENSG00000106244.13 protein_coding - - chr7:99392048-99408597:- chr7:99403398:- chr7:98989671-99006220:- chr7:99001021:- SEL1L2 ENSG00000101251.13 protein_coding - - chr20:13849247-13996443:- chr20:13888512:- chr20:13829893-13977089:- chr20:13869158:- chr7:99400333,chr7:99400336 chr20:13888922,chr20:13888922 NA NA chr7:98997956,chr7:98997959 chr20:13869568,chr20:13869568 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Sel1_repeat(84%) |Sel1(56%) 22 33 78 3105 188 ENST00000350498.8 ENST00000486903.5 upstream downstream duplicates(34),mismatches(11),multimappers(2) CGGAGCCGCAATGCCTAAAGGAG___GAAGAAAGGGAGGCCACAAAGGCCGGGCGAGGCAGTATACAAGCCCTGAGGAGATCGACGCGCAGCTGCAGGCTGAGAAGCAGAAGGCCAGG___GAAGAAGAGGAGCAAAAAGAAGGTGGAGATGGGGCTGCAGGTGACCCCAAAAAGGAGAAGAAATCTCTAGACTCAGATGAGAGTGAGGATGAAGAAGATGACTACCAG|GCATTAGGATTTTTGTCTTCTTATGGAATAGGAATGGAATATGATCAAGCTAAG___GCACTGATATATTACACCTTTGGAAGTGCTGGAGGAAACATGATGTCCCAGATGATTTTG___GGGTACAGATATTTGTCGGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTTATTACAAGAAAGTGGCAGATTATA___TTGCTGACACATTTGAAAAAAGTGAAGGTGTTCCAGTGGAAAAAGTGAGACTAACGGAAAGACCTGAAAATCTGAGTTCTAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGG MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDSDESEDEEDDYQ|ALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYKKVADYIADTFEKSEGVPVEKVRLTERPENLSSNSEILDWDIYQYYKFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20727 PTPRN2::CADM2 ENSG00000155093.20::ENSG00000175161.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1925 TRUE 3550 TRUE 1343 PTPRN2 ENSG00000155093.20 protein_coding - - chr7:157539056-158587823:- chr7:158587558:- chr7:157331750-158380515:- chr7:158380250:- CADM2 ENSG00000175161.14 protein_coding + + chr3:84958989-86074429:+ chr3:85883291:+ chr3:85008140-86123579:+ chr3:85932441:+ chr7:158562402,chr7:158562405 chr3:85853903,chr3:85853900 NA NA chr7:158355094,chr7:158355097 chr3:85903053,chr3:85903050 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |CD80-like_C2-set_immunoglobulin_domain_(100%),Immunoglobulin_V-set_domain(50%),Immunoglobulin_domain(100%) |C1-set(100%),C2-set_2(100%),I-set(46%),Ig_2(100%),Ig_3(56%),V-set(0%),ig(39%) 6 81 34 380 360 ENST00000389418.9 ENST00000383699.8 upstream upstream duplicates(15),mismatches(4) CGCGGGGATGGGGCCGCCGCTCCCGCTGCTGCTGCTGCTACTGCTGCTGCTGCCGCCACGCGTCCTGCCTGCCGCCCCTTCGTCCGTCCCCCGCGGCCGGCAGCTCCCGGGGCGTCTGG|CTTTAAGGGACAATAGGATCGAGCTGGTTCGCGCTTCCTGGCATGAATTGAGTATTAGTGTCAGTGATGTGTCTCTCTCTGATGAAGGACAGTACACCTGTTCTTTATTTACAATGCCTGTCAAAACTTCCAAGGCATATCTCACCGTTCTGG___GTGTTCCTGAAAAGCCTCAGATTAGTGGATTCTCATCACCAGTTATGGAGGGTGACTTGATGCAGCTGACTTGCAAAACATCTGGTAGTAAACCTGCAGCTGATATAAGATGGTTCAAAAATGACAAAGAGATTAAAG___ATGTAAAATATTTAAAAGAAGAGGATGCAAATCGCAAGACATTCACTGTCA MGPPLPLLLLLLLLLPPRVLPAAPSSVPRGRQLPGRL|aLRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20728 PTPRN2::CADM2 ENSG00000155093.20::ENSG00000175161.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3550 TRUE 1343 PTPRN2 ENSG00000155093.20 protein_coding - - chr7:157539056-158587823:- chr7:158587558:- chr7:157331750-158380515:- chr7:158380250:- CADM2 ENSG00000175161.14 protein_coding + + chr3:84958989-86074429:+ chr3:85935767:+ chr3:85008140-86123579:+ chr3:85984917:+ chr7:158562402,chr7:158562405 chr3:85853903,chr3:85853900 NA NA chr7:158355094,chr7:158355097 chr3:85903053,chr3:85903050 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Immunoglobulin_domain(100%) |I-set(28%),Ig_2(24%),Ig_3(20%),ig(11%) 0 1 1 380 696 ENST00000389418.9 ENST00000383699.8 upstream upstream none GCGGGGATGGGGCCGCCGCTCCCGCTGCTGCTGCTGCTACTGCTGCTGCTGCCGCCACGCGTCCTGCCTGCCGCCCCTTCGTCCGTCCCCCGCGGCCGGCAGCTCCCGGGGCGTCTGG|ATACACCATCAGTTAAGATTATACCATCGACTCCTTTTCCACAAGAAGGACAGCCTTTAATTTTGACTTGTGAATCCAAAGGAAAACCACT___GCCAGAACCTGTTTTGTGGACAAAGGATGGCGGAGAATTACCAGATCCTGACCGAATGGTTGTGAGTGGTAGGGAGCTAAACATTCTTTTCCTGAACAAAAC MGPPLPLLLLLLLLLPPRVLPAAPSSVPRGRQLPGRL|dTPSVKIIPSTPFPQEGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRELNILFLNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20729 CCNL2::DCDC2C ENSG00000221978.13::ENSG00000214866.9 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCNL2 ENSG00000221978.13 protein_coding - - chr1:1385711-1399335:- chr1:1398233:- chr1:1321091-1334715:- chr1:1333613:- DCDC2C ENSG00000214866.9 protein_coding + - chr2:3703575-3848008:+ chr2:3779498:- chr2:3751165-3895598:+ chr2:3827088:- chr1:1397983,chr1:1397985 chr2:3781507,chr2:3781506 NA NA chr1:1333363,chr1:1333365 chr2:3829097,chr2:3829096 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Cyclin__N-terminal_domain(71%)| Cyclin_N(23%)| 14 28 62 2063 142 ENST00000400809.8 unknown upstream downstream duplicates(20),mismatches(16) CGCAG___GTGGCCATGGCTACCGGGCAGGTGTTGTTCCAGCGGTTCTTTTATACCAAGTCCTTCGTGAAGCACTCCATGGAG___CATGTGTCAATGGCCTGTGTCCACCTGGCTTCCAAGATAGAAGAGGCCCCAAGACGCATACGGGACGTCATCAATGTGTTTCACCGCCTTCGACAGCTGAGAGACAAAAA|ATACACACATTTTATGTGGACGATAAGTTGCATAATCTCATAGAGGACCACAGACACACGCTCCCTGCATGGAGGAAGTTTCCAGGACATCCAGATAGGAAGAAGACCGAGCAAGAACCCACACTGCCAAGCGTCCTGCGCTGGCTTCCACTGCCATCTGCACACAGGCACCGCACGCCCTCACCCTCGTGCTCCCCGGCGGc?CCAGCCACTGACACCACGCCACAAACTACGCCAGTCAGCACCCCAGGTGTCCACTCCACACAGCCACCTGCACACCTGCTGC QVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKk|ythfmwtisciis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20730 CLINT1::EBF1 ENSG00000113282.14::ENSG00000164330.18 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLINT1 ENSG00000113282.14 protein_coding - - chr5:157785743-157859145:- chr5:157858930:- chr5:157212751-157286153:- chr5:157285938:- EBF1 ENSG00000164330.18 protein_coding - + chr5:158695920-159099916:- chr5:158841549:+ chr5:158122928-158526924:- chr5:158268557:+ chr5:157828959,chr5:157828970,chr5:157828965 chr5:158818004,chr5:158817994,chr5:158817999 NA NA chr5:157255967,chr5:157255978,chr5:157255973 chr5:158245012,chr5:158245002,chr5:158245007 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 9 34 32 313 71 ENST00000411809.7 unknown upstream upstream duplicates(17),mismatches(6) CGCCGCTGCTGTGGCAAAGGAAGGAGCTGACTGGGGGAGTTCGAGGCGGCGGGCGGCGGTGACCCCGGCCTGGAACTGCCCCGGTACGGAAGTGTTCCGGGGTCCGTGGGGAGCAGGAGAGGGAGGCGGCGGACCGTCCCGCGCGGGGCACGATGTTGAACATGTGGAAGGTGCGCGAGCTGGTGGACAAAGC|TCCACACTGGAGTAAAATCCCCATCTCAACACAAATAGATTATGAAGAACTATCACCCTATGATGCCTCAGTCTGAATTTGGCTCTGACTGCAATGTCTGTCAATCATGTAACACTGGGATCCTCTATAACAACAGCACTGCACGAAGACATACAGAGTTCAGCCAATTTCTGAATATGAAACTGAGAGAAGTCCCAGATGAATCCCTCTGCTCCTTGGTCTCTTAGAATCTGCCAAGATGGGAGTATGTTGTGGGAATCATTCTTTAGAGACAAAC MLNMWKVRELVDKa|phwskipistqidyeelspydasv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20735 MACF1::CLHC1 ENSG00000127603.32::ENSG00000162994.16 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39468732:+ chr1:39546988-39952849:+ chr1:39934404:+ CLHC1 ENSG00000162994.16 protein_coding - + chr2:55172547-55232563:- chr2:55211754:+ chr2:55399683-55459699:- chr2:55438890:+ chr1:39474990,chr1:39474991 chr2:55199080,chr2:55199078 NA NA chr1:39940662,chr1:39940663 chr2:55426216,chr2:55426214 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Calponin_homology_(CH)_domain(100%),EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(98%),Plectin_repeat(100%),SH3_domain(100%),Spectrin_like_domain(100%),Spectrin_repeat(100%)| CH(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),GAS2(37%),Plectin(100%),SH3_10(100%),Spectrin(100%),Spectrin_like(100%)| 4 19 19 1110 35 ENST00000567887.5 unknown downstream upstream duplicates(10),mismappers(7),mismatches(4) ATGCGTATCGACCAACAACCGATGCAGATAAAATCGAAGATGAG___GTTACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGATCGGAGAGAATAAATACCGG___TTCTTCCTCGGCAATCAG___TTTGGGGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACCGTGATGGTTCGCGTTGGTGGAGGATGGATGGCCTTGGATGAATTTTTAGTGAAAAATGATCCCTGCCGAG|GATGAATATCTGTAATTCCTCTATCCACTCATCGTAAAAACCTCTCCATATCCTAGATGAATTCCAGGATATACTACAATTTCTTAAAATGTGGTAACAGTATTATGCTGAAGATGTGGAAGCAGTGAATGCTGACATCAACATGAATCAACAATATCCACCAAAACTTAATACACTACAGTTTTCCTTATATTATACCAGTCGTTCTCAAACTTTAGAGTGCATCAAAAAAACCTGAAGCGGCTGGGCACAGTGGCTCATGCCTTTAATCCCAGCACTCTGGGAGGCTGAGGCGGGTGGATCGCTTGAGCCCAGGAGTTT AYRPTTDADKIEDEVTRQVAQCKCAKRFQVEQIGENKYRFFLGNQFGDSQQLRLVRILRSTVMVRVGGGWMALDEFLVKNDPCR|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20736 ENTPD4::LOXL2 ENSG00000197217.13::ENSG00000134013.16 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENTPD4 ENSG00000197217.13 protein_coding - - chr8:23385783-23457695:- chr8:23447680:- chr8:23243296-23315208:- chr8:23305193:- LOXL2 ENSG00000134013.16 protein_coding - + chr8:23296897-23425328:- chr8:23418280:+ chr8:23154410-23282841:- chr8:23275793:+ chr8:23444784,chr8:23444784,chr8:23444784,chr8:23444784 chr8:23417119,chr8:23417113,chr8:23417103,chr8:23417092 NA NA chr8:23302297,chr8:23302297,chr8:23302297,chr8:23302297 chr8:23274632,chr8:23274626,chr8:23274616,chr8:23274605 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none GDA1/CD39_(nucleoside_phosphatase)_family(12%)| GDA1_CD39(0%)| 24 12 5 270 90 ENST00000356206.10 unknown upstream upstream duplicates(12),mismatches(2) GTTTCACTTTTATATTTTTCTGTTGTCATAATCCGAAATAAGTATGGGCGACTAACCAGAGACAAGAAATTTCAAAG___GTACCTGGCACGAGTTACCGACATTGAAGCTACAGACACCAATAACCCCAATGTGAACTATGGGATCGTGGTGGACTGTGGTAGCAGTGGGTCTCGAGTATTTGTTTACTGCTGGCCAAGGCATAATGGCAATCCACATGATCTGTTGGATATCAGGCAAATGAGGGATAAAAACCGAAAGCCAGTGGTCATGAAGATAAAACCGG|ACAGTGGCTCCGAAGGGCTTTCATCACACGCATCATCTTGGAGCCCCTCGACCTCTCTGTGAGGCAG___GTGTCCTTATAAGAAGAGGAAAATGCCACGTGAAGACCGAGGCAGAGATAAAAGTGACACAGCTGCAGGCCAAGGACCATTGAGGATCGC VSLLYFSVVIIRNKYGRLTRDKKFQRYLARVTDIEATDTNNPNVNYGIVVDCGSSGSRVFVYCWPRHNGNPHDLLDIRQMRDKNRKPVVMKIKP|dsgseglsshasswspstsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20737 R3HDM2::PPP6R3 ENSG00000179912.21::ENSG00000110075.15 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1928 FALSE NA FALSE NA R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57395749:- chr12:57647545-57824826:- chr12:57789532:- PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68569748:+ chr11:68228199-68382802:+ chr11:68337216:+ chr12:57353496,chr12:57353492 chr11:68567683,chr11:68567683 NA NA chr12:57747279,chr12:57747275 chr11:68335151,chr11:68335151 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |SIT4_phosphatase-associated_protein(35%) |SAPS(20%) 1 30 8 144 867 ENST00000402412.6 ENST00000393800.7 upstream upstream duplicates(4) CGGAGACGTGGGCGCCCTCCCCGCCAAGGCCCGTGCGAG___AGGTTAGACTTGTTTCTTATATGTGATGCCATTCCAGCACTGGACTCATGGAGGCTGAGCATTTATTCAG|AACATGTTCTTCAAGTATACATGGAATAACTTTTTGCATACACAAGTGGAAATTTGTATTGCACTGATTCTTGCAAGTCCTTTTGAAAACACAGAAAATGCCACAATTACCGATCAAGACTCCACTGGTGATAATTTGTTATTAAAACAT___CTTTTCCAAAAATGTCAATTAATAGAACGAATACTTGAAGCCTGGGAAATGAATGAGAAGAAACA___GGCTGAGGGAGGAAGACGGCATGGTTACATGGGACACCTAACGAGGATAGCTAACTGTATCGTGCACAGCACTGACAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20738 MTO1::KCNQ5 ENSG00000135297.17::ENSG00000185760.18 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1929 FALSE NA FALSE NA MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73482620:+ chr6:74171301-74218959:+ chr6:74192343:+ KCNQ5 ENSG00000185760.18 protein_coding + + chr6:72621792-73198853:+ chr6:73190573:+ chr6:73331520-73908576:+ chr6:73900296:+ chr6:73486613,chr6:73486611 chr6:73189133,chr6:73189128 NA NA chr6:74196336,chr6:74196334 chr6:73898856,chr6:73898851 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Glucose_inhibited_division_protein_A(100%),tRNA_modifying_enzyme_MnmG/GidA_C-terminal_domain(49%)|KCNQ_voltage-gated_potassium_channel(57%) FAD_binding_2(100%),FAD_oxidored(100%),GIDA(100%),GIDA_C(2%)|KCNQ_channel(5%) 12 7 19 152 29 ENST00000498286.6 ENST00000342056.6 downstream upstream duplicates(3) CAGTCGCAAGCCTCCCTTTGTGGTTAGCCGAACAGAAGGTTACATAGGAGTCTTGATTGATGACCTCACTACTCTGGGCACCAGTGAACCATACCGCATGTTTACCAGCCGAGTAGAGTTCCGTTTGTCACTGCGCCCTGATAATGCTGACAGCCGGCTCACACTGCGAG___GGTATAAAGACGCTGGCTGTGTGTCCCAACAACGATATGAAAGAGCTTGTTGGATGAAGTCTTCTTTAGAAGAAGGCATTTCTGTGTTGAAATCTATTGAGTTTTTGAGCTCTAAATGGAAAAAATTAATCCCAGAGGCTTCTATAAGTACTAGTAGAAGTCTGCCTGTCAG|AATTATGAAATTTCATGTTGCAAAACGGAAGTTTAAGGAAACATTACGTCCATATGATGTAAAAGATGTCATTGAACAATATTCTGCTGGTCATCTGGACATGTTGTGTAGAATTAAAAGCCTTCAAACACG___TGTTGATCAAATTCTTGGAAAAGGGCAAATCACATCAGATAAGAAGAGCCGAGAGAAAATAACAGCAGAACATGAGACCACA SRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVr|IMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20740 RPN2::ENTPD4 ENSG00000118705.18::ENSG00000197217.13 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1931 FALSE NA FALSE NA RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37225802:+ chr20:35806813-35870022:+ chr20:35854205:+ ENTPD4 ENSG00000197217.13 protein_coding - - chr8:23385783-23457695:- chr8:23437258:- chr8:23243296-23315208:- chr8:23294771:- chr20:37228706,chr20:37228699,chr20:37228695 chr8:23438567,chr8:23438567,chr8:23438578 NA NA chr20:35857109,chr20:35857102,chr20:35857098 chr8:23296080,chr8:23296080,chr8:23296091 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Oligosaccharyltransferase_subunit_Ribophorin_II(68%)|GDA1/CD39_(nucleoside_phosphatase)_family(41%) Ribophorin_II(79%)|GDA1_CD39(82%) 13 9 16 2489 168 ENST00000705448.1 ENST00000356206.10 downstream downstream duplicates(10),low_entropy(5),mismatches(5) ACCGGTATATTGCAAATACCGTAGAG___CTCAGAGTCAAGATCTCCACTGAAGTTGGCATCACAAATGTTGATCTTTCCACCGTGGATAAGGATCAGAGCATTGCACCCAAAACTACCCG___GGTGACATACCCAGCCAAAGCCAAGGGCACATTCATCGCAGACAGCCACCAGAACTTCGCCTTGTTCTTCCAGCTGGTAGATGTGAACACTGGTGCTGAACTCACTCCTCACCAG|GCTCCTGGGTAAACAGACTGGTCTGACTCCTGATATGCCGTACTTGGACCCCTGCCTACCCCTAGACATTAAAGATGAAATCCAGCAAAATGGACAAACCATATACCTACGAGGGACTGGAGACTTTGACCTGTGTCGAGAGACTATCCAGCCTTTCATGAATAAAACAAACGAGACCCAGACTTCCCTCAATGGGGTCTACCAGCCCCCAATTCACTTCCAGAACAGTGAATTCTATGGCTTCTCCGAATTCTACTACTGCACCGAGGATGTGTTACGAATGGGGGGAGACTACAATGCTGCTAAATTTACTAAAGCTGCAAAG RYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQ|apg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20742 MEMO1::KCNB1 ENSG00000162959.14::ENSG00000158445.10 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1932 TRUE 3552 TRUE 1344 MEMO1 ENSG00000162959.14 protein_coding - - chr2:31865060-32011230:- chr2:32010187:- chr2:32090129-32236299:- chr2:32235256:- KCNB1 ENSG00000158445.10 protein_coding - - chr20:49293394-49484297:- chr20:49374992:- chr20:47909931-48100834:- chr20:47991529:- chr2:31982622,chr2:31982626 chr20:49431701,chr20:49431702 NA NA chr2:32207691,chr2:32207695 chr20:48048238,chr20:48048239 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Memo-like_protein(4%)|Ion_transport_protein(99%),Kv2_voltage-gated_K+_channel(100%) Memo(0%)|Ion_trans(0%),Ion_trans_2(100%),Kv2channel(100%) 8 16 12 130 132 ENST00000295065.9 ENST00000371741.6 upstream downstream duplicates(6),mismatches(13),multimappers(1) GCCATCTCCTCCTCCTGGGCCGCCGCCTCCTCCTCTTCCTCCTCCTCCTGGGCCGGGCTGATCCCCTCCCCGCTGCCGCCTCCTCCTGGGCTGGGCCCGCGGTGTCTCGTCCCCTCGCGGAGCCGCTCCTGCCGCCGCCGCCGCCGCCTCCTCATTCATCCTCGTGCACCATAGGCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCTGCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAG|ATCCTTGCCATAATTTCCATCATGTTCATCGTCCTCTCCACCATTGCCCTGTCCCTCAACACGCTGCCTGAGCTACAGAGCCTCGATGAGTTCGGCCAGTCCACAGACAACCCCCAGCTGGCCCACGTGGAGGCCGTGTGCATCGCATGGTTCACCATGGAGTACCTGCTGAGGTTCCTCTCCTCGCCCAAGAAGTGGAAGTTCTTCAAGGGCCCACTCAATGCCATTGACTTGTTGGCCATTCTGCCATACTATGTCACCATTTTCCTCACCGA MSNRVVCREASHAGSWYTAS|dpchnfhhvhrplhhcpvpqhaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20743 MEMO1::KCNB1 ENSG00000162959.14::ENSG00000158445.10 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3552 TRUE 1344 MEMO1 ENSG00000162959.14 protein_coding - - chr2:31865060-32011230:- chr2:32010994:- chr2:32090129-32236299:- chr2:32236063:- KCNB1 ENSG00000158445.10 protein_coding - - chr20:49293394-49484297:- chr20:49374992:- chr20:47909931-48100834:- chr20:47991529:- chr2:31982622,chr2:31982626 chr20:49431701,chr20:49431702 NA NA chr2:32207691,chr2:32207695 chr20:48048238,chr20:48048239 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Ion_transport_protein(99%),Kv2_voltage-gated_K+_channel(100%) |Ion_trans(0%),Ion_trans_2(100%),Kv2channel(100%) 0 1 0 3 132 ENST00000437854.1 ENST00000371741.6 upstream downstream duplicates(1) CGTTGAGATTCCTCGGCGG|ATCCTTGCtATAATTTCCATCATGTTCATaGTCCTCTCCACCATTGCCCTGTtCCTCAACACGCTGCCTGAGCTACAGAGCC...CCTCACCGAATCCAACAAGAGCGTGCTGCAATTCCAGAATGTCCGCCGCGTGGTCCAGATCTTCCGCATCATGCGAATTCTCCGCATCCTTAAGCTTGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20746 RPH3AL::TENM1 ENSG00000181031.16::ENSG00000009694.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1933 TRUE 3553 TRUE 1345 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:219623:- chr17:62180-236045:- chr17:69414:- TENM1 ENSG00000009694.14 protein_coding - - chrX:124375903-125204312:- chrX:124565560:- chrX:123509753-124338161:- chrX:123699410:- chr17:213070,chr17:213073 chrX:124569565,chrX:124569565 NA NA chr17:62861,chr17:62864 chrX:123703415,chrX:123703415 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none FYVE-type_zinc_finger(100%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%) FYVE_2(100%)|Tox-GHH(100%) 12 6 8 41 57 ENST00000323434.12 ENST00000422452.3 upstream downstream duplicates(5),mismatches(4) AGAGAG...CCTGGTTCTACAAAGGGCTCCCCAAGTATATCTTGCCCCTGAAGACCCCTGGCCGAGCTGATGACCCCCACTTCCGACCTTTGCCCACGGAACCGGCAGAGCGAGAGCCCAGAAGCTCTGAGACCAGCCGCATCTACACGTGGGCCCGAGGAAGAG___TGGTTTCCAGTGACAGTGACAGTGACTCGGATCTTAGCTCCTCCAGCCTAGAGGACAGACTCCCATCCACTGGGGTCAGGGACCGGAAAGGCGACAAACCCTGGAAGGAGTCAG|AGCTGTGTACCATGGAGTGTGGTAGCCATGGAGTCTGCTCAAGAGGAATTTGCCAGTGTGAAGAAGGCTGGGTAGGACCAACATGTGAGGAACGCTCCTGTCATTCTCATTGTACTGAGCATGGCCAATGCAAAGATGGAAAATGTGAGTGTAGCCCTGGATGGGAGGGCGACCACTGCACAATTG___CTCACTACTTAGATGCTGTCCGAG___ATGGCTGCCCAGGGCTCTGCTTTGGAAATGGACGATGTACCCTGGATCAAAATGGTTG WFYKGLPKYILPLKTPGRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKES|eLCTMECGSHGVCSRGICQCEEGWVGPTCEERSCHSHCTEHGQCKDGKCECSPGWEGDHCTIAHYLDAVRDGCPGLCFGNGRCTLDQNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20747 RPH3AL::TENM1 ENSG00000181031.16::ENSG00000009694.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1934 TRUE 3553 TRUE 1345 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:215654:- chr17:62180-236045:- chr17:65445:- TENM1 ENSG00000009694.14 protein_coding - - chrX:124375903-125204312:- chrX:124565560:- chrX:123509753-124338161:- chrX:123699410:- chr17:213070,chr17:213073 chrX:124569565,chrX:124569565 NA NA chr17:62861,chr17:62864 chrX:123703415,chrX:123703415 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none FYVE-type_zinc_finger(100%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%) FYVE_2(100%)|Tox-GHH(100%) 6 3 13 13 57 ENST00000323434.12 ENST00000422452.3 upstream downstream duplicates(3),mismatches(2) GTAAGATCTGCAGTGAGCAAAGAGAG___...GGAACCGGCAGAGCGAGAGCCCAGAAGCTCTGAGACCAGCCGCATCTACACGTGGGCCCGAGGA...___TGGTTTCCAGTGACAGTGACAGTGACTCGGATCTTAGCTCCTCCAGCCTAGAGGACAGACTCCCATCCACTGGGGTCAGGGACCGGAAAGGCGACAAACCCTGGAAGGAGTCAG___GTGGCAGCGTGGAGGCCCCCAGGATGGGGTTCACCCACCCGCCGGGCCACCTCTCTGGGTGCCAGAGCAGCCTGGCCAGTGGTGAGACGGGGACAGGCTCTGCTGACCCGCCAGGGGGACCCCGCCCCGGGCTGACCCGAAGGGCCCCG|AGCTGTGTACCATGGAGTGTGGTAGCCATGGAGTCTGCTCAAGAGGAATTTGCCAGTGTGAAGAAGGCTGGGTAGGACCAACATGTGAGGAACGCTCCTGTCATTCTCATTGTACTGAGCATGGCCAATGCAAAGATGGAAAATGTGAGTGTAGCCCTGGATGGGAGGGCGACCACTGCACAATTG___CTCACTACTTAGATGCTGTCCGAG___ATGGCTGCCCAGGGCTCTGCTTTGGAAATGGACGAT VSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAP|scvpwsvvamesaqeefasvkkag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20748 RPH3AL::TENM1 ENSG00000181031.16::ENSG00000009694.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3553 TRUE 1345 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:281768:- chr17:62180-236045:- chr17:131559:- TENM1 ENSG00000009694.14 protein_coding - - chrX:124375903-125204312:- chrX:124565560:- chrX:123509753-124338161:- chrX:123699410:- chr17:213070,chr17:213073 chrX:124569565,chrX:124569565 NA NA chr17:62861,chr17:62864 chrX:123703415,chrX:123703415 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none FYVE-type_zinc_finger(88%)|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%) FYVE_2(53%)|Tox-GHH(100%) 1 0 2 49 57 ENST00000618002.4 ENST00000422452.3 upstream downstream none CCCAGTGTCTGCTCTGCGGGGAGGTGCTGGGCTTCCTGGGCAGCTCGTCGGTGTTCTGCAAAGACTGCAGGAAG___AAAGTCTGCACCAAATGTGGGATCGAGGCCTCCaCTGGCaAGAAGCGGCCCCTGTGGCTGTGTAAGATCTGCAGTGAGCAAAGAGAG|AGCTGTGTACCATGGAGTGTGGTAGCCATGGAGTCTGCTCAAGAGGAATTTGCCAGTGTGAAGAAGGCTGGGTAGGACCAACATGTGAGGAACGCTCCTGTCATTCTCATTGTACTGAGCATGGCCAATGCAAAGATGGAAAATGTGAGTtTAGCCCTGGATGGGAGGGCGACCACTGCACAATTG___CTCACTAC QCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEAStGkKRPLWLCKICSEQRE|scvpwsvvamesaqeefasvkkag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20758 ENSG00000253642::RP1 ENSG00000253642.6::ENSG00000104237.11 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1938 FALSE NA FALSE NA ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:33796436:+ chr8:33462374-33896622:+ chr8:33653954:+ RP1 ENSG00000104237.11 protein_coding + + chr8:54509422-54871720:+ chr8:54857028:+ chr8:55421982-55784280:+ chr8:55769588:+ chr8:33981461 chr8:54855304 NA NA chr8:33838979 chr8:55767864 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |PLAT/LH2_domain(10%) |PLAT(9%) 3 7 7 190 15 ENST00000523063.5 ENST00000637698.1 downstream upstream duplicates(1) GCAGCATCAGAGCCTGGGGCCCTGGCAGGGGTGCCCAAGGGCACGGCAGCTGCAGGTATTGACAAGGCCAGAAGACG___GCCCTCTGTGCATGCCATGCTTAATAAGGTAATAAAAAGGTAAGATTATAAAGAAGGAAGAGGCCTATCAAGGAAAGAAGGCTCTTTATTTGCTTTGCTGTCATGGTATCCTTCCCATTCCACTGGCTTCCAGCACATATGTG|GTTGATATTTTTTCCATTAAGGCTGTATCTCTCGGAAAATTGAAGAAAGTTCTGATTAGTCATGATGGAACAtGTCCAG___GTAATGGATGGTTTCTTGGGAGTATTGTTGTTAAGTCTGAAGATGAAGACAGCAGTGAAGAGGTGCTGTTTCTATGCAACAG___ATGGCTAGATGAGTACCAAGATGATGGCAAGACCCAGCGGGAATTGCTCGCAGA...GTCCCAGTGCAGTAGGAGAGACTGGGTCTACCATCTCCTGAAAGGGCCCACTTGGGCCTGTCGCTCCAATATGCTTCAAAAGGCTATTGATCTGATTGTGATAGTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20759 ZMAT4::LINC01111 ENSG00000165061.15::ENSG00000254300.1 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1939 FALSE NA FALSE NA ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40897683:- chr8:40388109-40755352:- chr8:40755202:- LINC01111 ENSG00000254300.1 lncRNA + + chr8:76406654-76524356:+ chr8:76475946:+ chr8:77318889-77436591:+ chr8:77388181:+ chr8:40892158 chr8:76457058 NA NA chr8:40749677 chr8:77369293 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 3 4 6 48 7 ENST00000315769.11 ENST00000518732.1 upstream upstream duplicates(2) CCGAAAGGTCTGGTCGCAGAGACAGGAACGTGTAATCCTCAGCGTGCTCCAGCCCACAGCTTCGCTCTACTGCTCGGCAGGGCAGCTGGCCTCTGGGCACCGGCGGCCCCTCTGCCTCGCGGAAAAG|TTCCATCAAAGGAGGGATCTTCCTACTGACCAGAAGACCTGAACAGCCTGAGAATGATTCCTTTCAACTCCGAGAGAAGAAGCTGCAGATGAAGAGCAAG...___TCCTGGGATACATGTGCAGAATGTGCAGAATGTGTACATAGGTACACACTACCATGGTGGTTTGCTGCACCCATCAACTCGTCATCTAC...___GATACTGTTTACTGAAAACCCACCAATCTGATCTTTTATGAGAA...CCTTGGATCAAAG___ACAGAATTTCCAGGCTGGAGCGAAATGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCGAGTTTCAAGCAATTCTCATGCCTCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20760 FAM135A::ENSG00000287557 ENSG00000082269.17::ENSG00000287557.1 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM135A ENSG00000082269.17 protein_coding + + chr6:70412941-70561174:+ chr6:70538401:+ chr6:71122644-71270877:+ chr6:71248104:+ ENSG00000287557 ENSG00000287557.1 lncRNA + - chr6:67888977-67998751:+ chr6:67940118:- chr6:68598869-68708643:+ chr6:68650010:- chr6:70551125,chr6:70551117 chr6:67948919,chr6:67948927 NA NA chr6:71260828,chr6:71260820 chr6:68658811,chr6:68658819 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_FAM135_(100%),Putative_serine_esterase_(DUF676)(84%)| DUF3657(100%),DUF676(35%),Palm_thioest(100%)| 5 0 8 81 0 ENST00000418814.7 unknown downstream downstream duplicates(3) CTTATGTCTGAGAGAAATCAG___AATGATACTTTTGCTGATTTTGATAGCATGACTGATCGTCTTTTGGATGAGATAATACAGTATATTCAGATATATAGTCTAACAGTCTCAAAAATAAG___CTTTATTGGACATTCGTTGGGCAATTTAATAATTCGTTCAGTGCTTACAAGGCCAAGGTTTAAATATTACCTCAACAAACTTCATACCTTTCTGTCTCTTTCTGGACCTCACCTTGGTACACTCTACAACAGCAGTGCTCTTGTTAATACAG___GTCTCTGGTTTATGCAGAAATGGAAAAAATCAGGTTCGCTTTTGCAGCTGACATGTCGAGATCACTCAGACCCTCGCCAAACTTTTTTATATAAGCTTAGTAACAAAGCAG|AAAATTGTGGAATATCTATAAAATGCAATGAGGAGATAATATCCAAGGTCAGATGTGTAGCAGGCAAGAAAAAGTTACAGCTGCTGAACTGTGCTCAATTTCTTCCATGATTG___GTCTATATTTACATATCCAAATCTAGCAGCCAACATTTTTGGATTTCAG___AGGATCTCTCATCCATTCTCATGATTCTGAT LMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKA|encgisikcneeiiskvrcvagkkklqllncaqflp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20761 FAM135A::ENSG00000286680 ENSG00000082269.17::ENSG00000286680.1 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM135A ENSG00000082269.17 protein_coding + + chr6:70412941-70561174:+ chr6:70538401:+ chr6:71122644-71270877:+ chr6:71248104:+ ENSG00000286680 ENSG00000286680.1 lncRNA + - chr6:67884041-67986503:+ chr6:67940118:- chr6:68593933-68696395:+ chr6:68650010:- chr6:70551125,chr6:70551117 chr6:67948919,chr6:67948927 NA NA chr6:71260828,chr6:71260820 chr6:68658811,chr6:68658819 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Protein_FAM135_(100%),Putative_serine_esterase_(DUF676)(84%)| DUF3657(100%),DUF676(35%),Palm_thioest(100%)| 5 0 8 81 0 ENST00000418814.7 unknown downstream downstream duplicates(3) CTTATGTCTGAGAGAAATCAG___AATGATACTTTTGCTGATTTTGATAGCATGACTGATCGTCTTTTGGATGAGATAATACAGTATATTCAGATATATAGTCTAACAGTCTCAAAAATAAG___CTTTATTGGACATTCGTTGGGCAATTTAATAATTCGTTCAGTGCTTACAAGGCCAAGGTTTAAATATTACCTCAACAAACTTCATACCTTTCTGTCTCTTTCTGGACCTCACCTTGGTACACTCTACAACAGCAGTGCTCTTGTTAATACAG___GTCTCTGGTTTATGCAGAAATGGAAAAAATCAGGTTCGCTTTTGCAGCTGACATGTCGAGATCACTCAGACCCTCGCCAAACTTTTTTATATAAGCTTAGTAACAAAGCAG|AAAATTGTGGAATATCTATAAAATGCAATGAGGAGATAATATCCAAGGTCAGATGTGTAGCAGGCAAGAAAAAGTTACAGCTGCTGAACTGTGCTCAATTTCTTCCATGATTG___GTCTATATTTACATATCCAAATCTAGCAGCCAACATTTTTGGATTTCAG___AGGATCTCTCATCCATTCTCATGATTCTGAT LMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKA|encgisikcneeiiskvrcvagkkklqllncaqflp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20763 ST3GAL3::FAM76A ENSG00000126091.21::ENSG00000009780.16 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 1940 FALSE NA FALSE NA ST3GAL3 ENSG00000126091.21 protein_coding + + chr1:43705824-43931165:+ chr1:43736380:+ chr1:44171495-44396837:+ chr1:44202051:+ FAM76A ENSG00000009780.16 protein_coding + + chr1:27725961-27763116:+ chr1:27760495:+ chr1:28052472-28089627:+ chr1:28087006:+ chr1:43741886,chr1:43741887 chr1:27760285,chr1:27760283 NA NA chr1:44207557,chr1:44207558 chr1:28086796,chr1:28086794 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |FAM76_protein(5%) |FAM76(0%) 0 4 6 52 131 ENST00000330208.6 ENST00000373954.11 downstream upstream duplicates(3) CCGGGCGCCACCTCCCCCCTGCCTCCCTCTCCGCTGTG___GTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAGGAGGACTCCA|GCCAAAAACCGAGAGCTCCTGAAGCAGGCAGCTGCTTTGTCCAAGAGCAAGAAGTCAGAGAAGTCAGGAGCTATAACCTCTCCATGACAGACCTCAAGGAGGCTCCCTAGCAACAGCAAATGGAGTTGTCCAGGGTTAGGGTTGGAGACCTGGCTGTTCTGTGGGAATTGCAAGCTTTCTTAAGAAATCTCTATTTTATTACAGTTATCCTTCTTTGTGCGATTGCAGTGGGCTGAATGGAAACACCTGGTTTGTGCTGTGTTAGACTGCATGCTTG MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS|sqkprapeagscfvqeqevrevrsynlsmtdlkeap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20765 ENSG00000284989::FAM76A ENSG00000284989.1::ENSG00000009780.16 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284989 ENSG00000284989.1 protein_coding + + chr1:43650149-43931014:+ chr1:43736380:+ chr1:44115820-44396686:+ chr1:44202051:+ FAM76A ENSG00000009780.16 protein_coding + + chr1:27725961-27763116:+ chr1:27760495:+ chr1:28052472-28089627:+ chr1:28087006:+ chr1:43741886,chr1:43741887 chr1:27760285,chr1:27760283 NA NA chr1:44207557,chr1:44207558 chr1:28086796,chr1:28086794 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none |FAM76_protein(5%) JmjC(100%),JmjN(100%),PHD_2(100%),Tudor_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)|FAM76(0%) 0 4 6 52 131 ENST00000645057.1 ENST00000373954.11 downstream upstream duplicates(3) CCGGGCGCCACCTCCCCCCTGCCTCCCTCTCCGCTGTG___GTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAGGAGGACTCCA|GCCAAAAACCGAGAGCTCCTGAAGCAGGCAGCTGCTTTGTCCAAGAGCAAGAAGTCAGAGAAGTCAGGAGCTATAACCTCTCCATGACAGACCTCAAGGAGGCTCCCTAGCAACAGCAAATGGAGTTGTCCAGGGTTAGGGTTGGAGACCTGGCTGTTCTGTGGGAATTGCAAGCTTTCTTAAGAAATCTCTATTTTATTACAGTTATCCTTCTTTGTGCGATTGCAGTGGGCTGAATGGAAACACCTGGTTTGTGCTGTGTTAGACTGCATGCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20766 EEA1::ENSG00000258216 ENSG00000102189.17::ENSG00000258216.7 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3556 FALSE NA EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92857275:- chr12:93164413-93323107:- chr12:93251051:- ENSG00000258216 ENSG00000258216.7 lncRNA + + chr12:89712048-90100763:+ chr12:89921067:+ chr12:90105825-90494540:+ chr12:90314844:+ chr12:92856991,chr12:92856993 chr12:89839929,chr12:89839927 NA NA chr12:93250767,chr12:93250769 chr12:90233706,chr12:90233704 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 2 7 116 24 ENST00000322349.13 ENST00000651272.1 upstream upstream none GGAGAGTCTAATCTTGCTTTGAAGCG___AGATGATGTAACACTGCTCAGACAAGAGGTCCAAGACCTACAGGCTTCACTTAAG___GAAGAAAAATGGTACTCGGAAGAATTAAAGAAGGAATTAGAAAAATATCAAGGGCTGCAGCAGCAA|AACCAGGAAGATCCGGATAAAGACACTGTCTGCACTCTACTCAGATGCCCTTTGAGTCTATGCGCTGTTTCTGGGCTCATCCTCCAGCCTCAACGTGTTTGCT___GCCACACAGCATGTCCTGTGGGACTGGAGAAATATGGAGAATGCAGCACACTTG...TGAAAATCATTTTGCATAATGAAG___GATTAAAATCAAATTGTTTTGGGACAGCAGAGGATGAAGAAACTCATTTTGACTGAAGTTATTGGATGAGACATGGC GESNLALKRDDVTLLRQEVQDLQASLKEEKWYSEELKKELEKYQGLQQQ|nqedpdkdtvctllrcplslcavsglilqpqrvcchtacpvglekygecstl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20769 NRXN1::CCDC85A ENSG00000179915.25::ENSG00000055813.6 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NRXN1 ENSG00000179915.25 protein_coding - - chr2:49918503-51225575:- chr2:50921869:- chr2:50145641-51452713:- chr2:51149007:- CCDC85A ENSG00000055813.6 protein_coding + - chr2:56183990-56386172:+ chr2:56309039:- chr2:56411125-56613307:+ chr2:56536174:- chr2:50858945,chr2:50858949 chr2:56332714,chr2:56332715 NA NA chr2:51086083,chr2:51086087 chr2:56559849,chr2:56559850 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Laminin_G_domain(16%)| Laminin_G_1(0%),Laminin_G_2(0%)| 1 0 7 0 1 ENST00000406316.6 unknown upstream downstream none CAGGCCGTGTGCGACTGCTCGCGAACCGGCTTCCGCGGCAAGGACTGCAGCCAAG___AAGACAACAATGTGGAAG___GTCTGGCGCACCTGATGATGGGCGACCAAG___GTAAAAGTAAAG|AGAGCACAATCCCAAGTCCaAGTTGGAGAATTTTGAAAGCTGAGGAACCCACAGATCTCCCTTCCTCCAAAACAGAGTTCT QAVCDCSRTGFRGKDCSQEDNNVEGLAHLMMGDQGKSK|estipspswrilkaeeptdlpssktef NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20770 NRXN1::ENSG00000271894 ENSG00000179915.25::ENSG00000271894.1 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NRXN1 ENSG00000179915.25 protein_coding - - chr2:49918503-51225575:- chr2:50921869:- chr2:50145641-51452713:- chr2:51149007:- ENSG00000271894 ENSG00000271894.1 lncRNA + - chr2:56147630-56386171:+ chr2:56309039:- chr2:56374765-56613306:+ chr2:56536174:- chr2:50858945,chr2:50858949 chr2:56332714,chr2:56332715 NA NA chr2:51086083,chr2:51086087 chr2:56559849,chr2:56559850 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Laminin_G_domain(16%)| Laminin_G_1(0%),Laminin_G_2(0%)| 1 0 6 0 1 ENST00000406316.6 unknown upstream downstream none CAGGCCGTGTGCGACTGCTCGCGAACCGGCTTCCGCGGCAAGGACTGCAGCCAAG___AAGACAACAATGTGGAAG___GTCTGGCGCACCTGATGATGGGCGACCAAG___GTAAAAGTAAAG|AGAGCACAATCCCAAGTCCaAGTTGGAGAATTTTGAAAGCTGAGGAACCCACAGATCTCCCTTCCTCCAAAACAGAGTTCT QAVCDCSRTGFRGKDCSQEDNNVEGLAHLMMGDQGKSK|estipspswrilkaeeptdlpssktef NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20779 DPP8::MEGF11 ENSG00000074603.19::ENSG00000157890.19 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPP8 ENSG00000074603.19 protein_coding - - chr15:65442463-65517704:- chr15:65512295:- chr15:65734801-65810042:- chr15:65804633:- MEGF11 ENSG00000157890.19 protein_coding - - chr15:65895079-66253756:- chr15:66195337:- chr15:66187417-66546094:- chr15:66487675:- chr15:65510089 chr15:66250581 NA NA chr15:65802427 chr15:66542919 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none |Human_growth_factor-like_EGF(100%),Laminin_EGF_domain(100%) Dpp_8_9_N(19%)|Laminin_EGF(100%),hEGF(100%) 1 0 4 352 3 ENST00000300141.11 unknown upstream downstream none GGACGGTCCGGGCGGGGCCGGGGGGAAG___GAAAATGCAACATGGCAGCAGCAATGGAAACAGAACAGCTGGGTGTTGAGATATTTGAAACTGCGGACTGTGAGGAGAATATTGAATCACAGGATCGGCCTAAATTGGAGCCTTTTTATGTTGAGCGGTATTCCTGGAGTCAGCTTAAAAAGCTGCTTGCCGATACCAGAAAATATCATGGCTACATGATGGCTAAGGCACCACATGATTTCATGTTTGTGAAGAGGAATGATCCAGATGGACCTCATTCAGACAGAATCTATTACCTTG|AATGTTGTTGTGGACTGATGGTGTCCCTCAAAACTTCAGATGTTGAAGTCCTAAcCCCCAATACCTCAGAATGTGATTATATTTGGAGAGAAGGCCTTAAAAAG___aTTTTCTCACTCAACATCGC MAAAMETEQLGVEIFETADCEENIESQDRPKLEPFYVERYSWSQLKKLLADTRKYHGYMMAKAPHDFMFVKRNDPDGPHSDRIYYL|ecccglmvslktsdvevltpntsecdyiwreglkkifslni NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20782 PPP4R3A::TTC7B ENSG00000100796.18::ENSG00000165914.15 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP4R3A ENSG00000100796.18 protein_coding - - chr14:91457508-91510554:- chr14:91481576:- chr14:91923852-91976898:- chr14:91947920:- TTC7B ENSG00000165914.15 protein_coding - - chr14:90524564-90816479:- chr14:90744922:- chr14:90990908-91282823:- chr14:91211266:- chr14:91481183 chr14:90777394 NA NA chr14:91947527 chr14:91243738 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Phosphatase_4_regulatory_subunit_3(73%)|Anaphase-promoting_complex__cyclosome__subunit_3(100%),Tetratricopeptide_repeat(100%) SMK-1(64%),WH1(100%)|ANAPC3(100%),TPR_10(100%),TPR_12(100%),TPR_16(100%),TPR_2(100%),TPR_8(100%),TTC7_N(54%) 1 0 4 449 30 ENST00000554943.6 ENST00000328459.11 upstream downstream none CGAAAACACAGGGAATTTCTAACAAAAACAGCCAAGTTTAAAGAAGTGATTCCCATATCAGATCCTGAGCTGAAACAAAAAATTCATCAGACATACAGAGTTCAGTATATACAAGATATGGTTCTACCAACTCCTTCGGTCTTTGAAGAAAACATGTTATCAACACTTCACTCTTTTATCTTTTTCAATAAGGTAGAGATTGTTGGCATGTTGCAG|GACTTTGTTTGGAGAAGCTGCCTATTTCTTCTTCTACCAGTAATCTCCATGTGGACCGGGAACAGGATGTCATCACCTGTTATGAGAAAGCAGGGGACATCGCACTCCTGTATCTCCAAGAGATAGAAAGG___GTAATACTTTCTAATATTCAAAACAGAAGCCCTAAGCCTGGCCCTGCTCCCCACGATCAAGAACTAGGTTTTTTCCTAGAAACAGGACTTCAGAG RKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQ|dfvwrsclflllpvismwtgnrmsspvmrkqgtshsciskr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20783 SSH3::KDM2A ENSG00000172830.13::ENSG00000173120.15 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3559 FALSE NA SSH3 ENSG00000172830.13 protein_coding + + chr11:67303478-67312607:+ chr11:67310339:+ chr11:67070949-67080078:+ chr11:67077810:+ KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67180079:+ chr11:66886734-67025553:+ chr11:66947550:+ chr11:67312480,chr11:67312479 chr11:67177400,chr11:67177396 NA NA chr11:67079951,chr11:67079950 chr11:66944871,chr11:66944867 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none DEK_C_terminal_domain(100%),Dual_specificity_phosphatase__catalytic_domain(100%)|CXXC_zinc_finger_domain(100%),F-box_domain(100%),Jumonji_helical_domain(100%),PHD-finger(100%) DEK_C(100%),DSPc(100%)|F-box(100%),F-box-like(100%),JHD(100%),PHD_4(100%),zf-CXXC(100%) 2 2 1 138 384 ENST00000376757.9 ENST00000529006.7 downstream upstream none CAGGCAGCCCCGAAAGAAGAGCCTGGGCCACGGCCACGTATAAACCTCCGAGGGGTCATGAGGTCCATCAGTCTTCTGGAGCCCTCCTTGGAGCTGGAGAGCACCTCAGAGACCAGTGACATGCCAGAG|CGTGGTACCATGCGACGACGCTATGAAGATGATGGCATTTCAGATGATGAAATTGAAGGAAAAAGAACTTTTGACTTGGAAGAGAAACTGCACACCAACAAATATAATGCCAATTTTGTTACTTTTATGGAAGGAAAAG___ATTTTAATGTAGAGTATATTCAGCGG QAAPKEEPGPRPRINLRGVMRSISLLEPSLELESTSETSDMPE|RGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 67075929 FALSE 66985202 FALSE YES Out-of-frame TRUE Breast BREAST no_match 67308458 FALSE 67217731 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20794 CAMK2B::RABEP2 ENSG00000058404.21::ENSG00000177548.13 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMK2B ENSG00000058404.21 protein_coding - - chr7:44210019-44334577:- chr7:44325357:- chr7:44249618-44374176:- chr7:44364956:- RABEP2 ENSG00000177548.13 protein_coding - - chr16:28904421-28936526:- chr16:28914782:- chr16:28915742-28947847:- chr16:28926103:- chr7:44314097,chr7:44314097 chr16:28915233,chr16:28915297 NA NA chr7:44353696,chr7:44353696 chr16:28926554,chr16:28926618 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_kinase_domain(3%)|Rabaptin(23%),Rabaptin-like_protein(100%) PK_Tyr_Ser-Thr(0%),Pkinase(0%)|Rab5-bind(100%),Rabaptin(1%) 0 2 1 20 305 ENST00000700284.1 ENST00000358201.9 upstream downstream mismatches(2) CGCCGCCCGAGCGCAGCCGAGCGCACGCCGAGCCCGTCCGCCGCCGCCATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAA|GCCCACGAGGACTCGGAGAAGCTGCGGGAGATCGTACTGCCCATGGAAAAGGAGATCGAGGAGCTGAAGGCGAAGCTGCTGAGGGCCGAGGAGCTGATTCAGGAGATCCAG___AG?CGTCCCCGG?ATGCCCCTTCCCTG...___CTCCTCCCTGCCCCAAAGCCGC MATTVTCTRFTDEYQLYEDIGk|ptrtrrscgrsycpwkrrsrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit beta CAMK CAMK2 Q13554 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20809 LINC02449::FAM66C ENSG00000215241.4::ENSG00000226711.9 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3564 FALSE NA LINC02449 ENSG00000215241.4 lncRNA + + chr12:8235415-8242564:+ chr12:8235999:+ chr12:8388011-8395160:+ chr12:8388595:+ FAM66C ENSG00000226711.9 lncRNA + + chr12:8180207-8216151:+ chr12:8215806:+ chr12:8332803-8368747:+ chr12:8368402:+ chr12:8238303,chr12:8238300 chr12:8208860,chr12:8208854 NA NA chr12:8390899,chr12:8390896 chr12:8361456,chr12:8361450 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 302 13 ENST00000304751.9 ENST00000454799.6 downstream upstream mismatches(2) GTCCCATGTGACCAGGCCTGTGGTACCGTGAGAGATGATGGCTGTGCTCTCGGAGATTGTGACCGAGCCTtCCGAGcGCTGCACCAAGcGAGGGCGgGAG...GAAAGACACTCATCTCAGGCCACACAGGATTCCATTCATCGAACtTTCCTGAGACAACGGAATTCTGGCGATGGAGCACAG|ATATAATACGTAAGTTTGGAGGTGGATGCTTTCAGCCATTAAGTTCAAAAGTACTGCCACAAGGGCCAGGCATGGTGGCTCgCgCCTGTAATCCCAACCCTTTGGGAGGTCAAAGCAAGCgGATCACGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney,Cervix,Lower grade glioma,Lower grade glioma,Cervix,Lower grade glioma,Lower grade glioma,Lower grade glioma KIDNEY,CERVIX,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,CERVIX,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM no_match 8235999,8235999,8235999,8235999|8238252,8235999|8238252,8235999,8235999,8235999 TRUE,TRUE,TRUE,TRUE|FALSE,TRUE|FALSE,TRUE,TRUE,TRUE 8215806,8215806,8215806,8215806|8215806,8215806|8215806,8215806,8215806,8215806 TRUE,TRUE,TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE,TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20813 EML6::RPN2 ENSG00000214595.13::ENSG00000118705.18 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3565 TRUE 1346 EML6 ENSG00000214595.13 protein_coding + + chr2:54723499-54972025:+ chr2:54724670:+ chr2:54950636-55199161:+ chr2:54951807:+ RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37229973:+ chr20:35806813-35870022:+ chr20:35858376:+ chr2:54739868,chr2:54739869 chr20:37228866,chr20:37228864 NA NA chr2:54967005,chr2:54967006 chr20:35857269,chr20:35857267 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Oligosaccharyltransferase_subunit_Ribophorin_II(20%) |Ribophorin_II(12%) 2 1 4 20 2132 ENST00000491655.1 ENST00000705448.1 downstream upstream duplicates(1),mismatches(1) GGGGAGGGCAGGCAGAGGATTTCGCTCGCTCGCCCGCGCGGGATCCGGGACGCGCCGGTGGCGTCCGCTGGCAGCAGAG___ACTGTCAATTTCGGATCCAAAGACGGCGATGGCAGAGCTCACCCGGGTTGCCTGTCAAATCAAGGCTATCGCAGAATAAATCCCGCCGCCTGCCGCGAAGCCCCGGCGCACCGCAAACTTCA|GCTGATGTGGTCATCAAGTTCCCTGAGGAAGAAGCTCCCTCGACTGTCTTGTCCCAGAACCTTTTCACTCCAAAACAGGAAATTCAG___CACCTGTTCCGCGAGCCTGAGAAGAGGCCCCCCACCGTGGTGTCCAATACATTCACTGCCCTGATCCTCTCGCCGTTG...ATTATATTTCACCTGGGACATGCTG___CTATGCTGGGACTCATGTATGTCTACTGGACTCAGCTCAACATGTTCCAGACCTTGAAGTACCTGGCCATCtTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20814 EML6::RPN2 ENSG00000214595.13::ENSG00000118705.18 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3565 TRUE 1346 EML6 ENSG00000214595.13 protein_coding + + chr2:54723499-54972025:+ chr2:54725258:+ chr2:54950636-55199161:+ chr2:54952395:+ RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37229973:+ chr20:35806813-35870022:+ chr20:35858376:+ chr2:54739868,chr2:54739869 chr20:37228866,chr20:37228864 NA NA chr2:54967005,chr2:54967006 chr20:35857269,chr20:35857267 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none HELP_motif(30%),WD_domain__G-beta_repeat(3%)|Oligosaccharyltransferase_subunit_Ribophorin_II(20%) HELP(3%),WD40(0%)|Ribophorin_II(12%) 1 1 4 22 2132 ENST00000673912.1 ENST00000437329.5 downstream upstream duplicates(2),mismatches(1) GGCGGATCGGACGGCGCCCCGCTGCCAGCTCCGGCTGGAGTGGGgGTACGGGTACCGGGGTCACCAGTGCCGCAACAACCTGTACTACACGGCAGGCAAGGAGGTGGTCTACTTTGTGGCTGGGGTCGGGGTGGTTTACAACACCCGCGAGCACAGCCAAAAATTCTTCCTGGGACACAACGACGACATTATCAG|GCTGATGTGGTCATCAAGTTCCCTGAGGAAGAAGCTCCCTCGACTGTCTTGTCCCAGAACCTTTTCACTCCAAAACAGGAAATTCAG___CACCTGTTCCGCGAGCCTGAGAAGAGGC...___TGGATCCGGATTGGTGCCAATGTCTCCAACTTCACTTTTGC ADRTAPRCQLRLEWgYGYRGHQCRNNLYYTAGKEVVYFVAGVGVVYNTREHSQKFFLGHNDDIIr|lmwsssslrkklprlscprtfslqnrkfstcsaslrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20816 PEDS1::RNF114 ENSG00000240849.11::ENSG00000124226.11 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PEDS1 ENSG00000240849.11 protein_coding - + chr20:50118254-50153734:- chr20:50133451:+ chr20:48734791-48770271:- chr20:48749988:+ RNF114 ENSG00000124226.11 protein_coding + + chr20:49936336-49953885:+ chr20:49949248:+ chr20:48552873-48570422:+ chr20:48565785:+ chr20:50135425,chr20:50135423,chr20:50135426 chr20:49946631,chr20:49946631,chr20:49946629 NA NA chr20:48751962,chr20:48751960,chr20:48751963 chr20:48563168,chr20:48563168,chr20:48563166 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |Drought_induced_19_protein_(Di19)__zinc-binding(46%) |zf-Di19(2%) 0 4 2 0 1149 unknown ENST00000244061.6 downstream upstream duplicates(1) GGCACACAGACGCCTAAGGACAGGCTGAAGGGTGTCACTGCACAGTGGCTGGGCTGAG|GTTTGTCCGATATGTGCCTCGATGCCCTGGGGAGACCCCAACTACCGCAGCGCCAACTTCAGAGAGCACATCCAGCGCCG...GACACTTTTGTG___GATTATGATGTTGATGAAGAGGACATGATGAATCAGGTGTTGCAGCGCTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCTG...TTAAACGTGAAATCTATGACTCCTGTACCTTACCTGTTCAACAGACCTGAAAATGAGCCATGGCATTGGGACAGGGTCACTTCTGACAGGGGAAGTGGGTC...CCTCTTGcTTCACACTCATTCCTCCCATCCAGTGTTTGTCTCTCGGGTCCTTCAAGCCAGCCAGGACCTTTTCTGGGTCATGAATAGCACAATGAAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20817 PEDS1-UBE2V1::RNF114 ENSG00000124208.16::ENSG00000124226.11 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PEDS1-UBE2V1 ENSG00000124208.16 protein_coding - + chr20:50081124-50153637:- chr20:50133451:+ chr20:48697661-48770174:- chr20:48749988:+ RNF114 ENSG00000124226.11 protein_coding + + chr20:49936336-49953885:+ chr20:49949248:+ chr20:48552873-48570422:+ chr20:48565785:+ chr20:50135425,chr20:50135423,chr20:50135426 chr20:49946631,chr20:49946631,chr20:49946629 NA NA chr20:48751962,chr20:48751960,chr20:48751963 chr20:48563168,chr20:48563168,chr20:48563166 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |Drought_induced_19_protein_(Di19)__zinc-binding(46%) |zf-Di19(2%) 0 4 2 0 1149 unknown ENST00000244061.6 downstream upstream duplicates(1) GGCACACAGACGCCTAAGGACAGGCTGAAGGGTGTCACTGCACAGTGGCTGGGCTGAG|GTTTGTCCGATATGTGCCTCGATGCCCTGGGGAGACCCCAACTACCGCAGCGCCAACTTCAGAGAGCACATCCAGCGCCG...GACACTTTTGTG___GATTATGATGTTGATGAAGAGGACATGATGAATCAGGTGTTGCAGCGCTCCATCATCGACCAGTGAGCAGAGTCCGTGCTTGCTATCTG...TTAAACGTGAAATCTATGACTCCTGTACCTTACCTGTTCAACAGACCTGAAAATGAGCCATGGCATTGGGACAGGGTCACTTCTGACAGGGGAAGTGGGTC...CCTCTTGcTTCACACTCATTCCTCCCATCCAGTGTTTGTCTCTCGGGTCCTTCAAGCCAGCCAGGACCTTTTCTGGGTCATGAATAGCACAATGAAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20819 SGF29::LINC00917 ENSG00000176476.9::ENSG00000168367.11 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SGF29 ENSG00000176476.9 protein_coding + + chr16:28553915-28591790:+ chr16:28554097:+ chr16:28565236-28603111:+ chr16:28565418:+ LINC00917 ENSG00000168367.11 lncRNA - + chr16:86331632-86349688:- chr16:86346951:+ chr16:86365238-86383294:- chr16:86380557:+ chr16:28576892,chr16:28576890 chr16:86346885,chr16:86346880 NA NA chr16:28588213,chr16:28588211 chr16:86380491,chr16:86380486 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' medium none none none 1 1 3 582 4 ENST00000317058.8 unknown downstream upstream none AAAAAAAGCGTGTGCGGTTCTCGACGTGCCGCCAATCTTCGAACGCAGGTCTGTGATCATCCGCAGACTCCGAAAAAGGGTTCGAGGAACGCGCCTGCTCCCCTCGTCGCAGTTTCCAGCCCGACGAGCTTGTTTTGTCCCGGACTCG|ATGAGACAAAGGAAGCTCAGAGAGGGGAACTGACTTCCGAGGTCACAGAACAAGCAAtGGTGGGACAGGATTTGAACCCAGGCTTGTTTGACCCCAGCCCCTTTCAACAAACATTTC...GGGTGGCAGCCTCGACACATCTCAAAGGCTCTGATACGGTTTGGCTGTGTCCCCACCCAAATTTCACCTTGAATTGTAATAATCCCAGCATGTCAAGGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20820 ITGB3BP::PGM1 ENSG00000142856.17::ENSG00000079739.17 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITGB3BP ENSG00000142856.17 protein_coding - - chr1:63440770-63593721:- chr1:63523129:- chr1:63906441-64059392:- chr1:63988800:- PGM1 ENSG00000079739.17 protein_coding + - chr1:63593411-63660245:+ chr1:63616586:- chr1:64059082-64125916:+ chr1:64082257:- chr1:63509141,chr1:63509152 chr1:63620056,chr1:63620060 NA NA chr1:63974812,chr1:63974823 chr1:64085727,chr1:64085731 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none EF-hand_5(100%),EF-hand_7(100%),EF-hand_8(100%)| 0 4 1 706 6 ENST00000489099.5 unknown upstream downstream none GGGGAGGATGTTTCCGCCCGGCCGCGGTGGGCTTGACGCAACGTCCAGCGCGtGCTTTTCATGCCTTGGCGTTTCCTTTGGCGGATTTTCTGTTTTCGGAAGTTGCTGGGTTCGTTTTATTCAGCGGCAGTGGTGCTTTCCCGAATCTCAGAATGCC|GCACTGTACACCTCAGGAAGACTCAAGTTGCCAAGAAACTTTTGGTGCAGAAGGAGAGATAGATAAGCCAACAAATCATTTTAAAATGGAGTAAAAAGTACTCATCTGGGAGCCTACAAGAGAGCTATGAGCACTCACAGGGCAGACAAGAAGCCATGGAAGGCATTCTCCATCTGCATAATTGCCATaCTGAACCCATGTGGTTtCGTCTGAAAACAATCTCCTCAATTTGAAGATGTGCAAGGCTTAGGAACCCCTTTTCATAAGTAAGGCACGTGTGAAGGAGTCTCCTGTTTTATCAGAAATGACCCATATTCAAACATTTTGACCTATAAAAACAGC Mp|hctpqedsscqetfgaegeidkptnhfkme* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20822 COBLL1::SLC38A11 ENSG00000082438.18::ENSG00000169507.10 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3566 FALSE NA COBLL1 ENSG00000082438.18 protein_coding - - chr2:164653624-164843679:- chr2:164761283:- chr2:165510134-165700189:- chr2:165617793:- SLC38A11 ENSG00000169507.10 protein_coding - - chr2:164894354-164955525:- chr2:164915973:- chr2:165750864-165812035:- chr2:165772483:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Transmembrane_amino_acid_transporter_protein(58%) |Aa_trans(31%) 0 1 2 9 689 ENST00000493921.1 ENST00000685975.1 upstream downstream none CCTCTGCTTCCCAGCTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTAGTATTACAG|ACCAAAAACAGAAGACGCTTGGGTATTTGCAAAGCCCAA...TTGTGTCATTGCTGATTGATTGCCTCGGGATAGTTCTAGAACTCAAT___GGTGTGCTCTGTGCAACTCCCCTCATTTTTATCATTCCATCAGCCTGTTATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Liver hepatocellular carcinoma,Head and Neck squamous cell carcinoma LUNG,LIVER,HEAD_AND_NECK exact 165697666,165697666|165630217|165697666,165697666|165697666|165697666|165697666|165697666|165697666 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE 165755240,165772483|165772483|165765281,165796066|165809291|165793939|165802237|165801144|165811255 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20861 ENSG00000266994::GLYR1 ENSG00000266994.1::ENSG00000140632.17 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000266994 ENSG00000266994.1 lncRNA - - chr16:4730115-4752565:- chr16:4746145:- chr16:4780116-4802566:- chr16:4796146:- GLYR1 ENSG00000140632.17 protein_coding - - chr16:4803203-4847288:- chr16:4823907:- chr16:4853204-4897289:- chr16:4873908:- chr16:4742872,chr16:4742877 chr16:4826588,chr16:4826590 NA NA chr16:4792873,chr16:4792878 chr16:4876589,chr16:4876591 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |NAD-binding_of_NADP-dependent_3-hydroxyisobutyrate_dehydrogenase(100%),NAD_binding_domain_of_6-phosphogluconate_dehydrogenase(100%) |F420_oxidored(100%),NAD_binding_11(100%),NAD_binding_2(100%) 1 2 0 7 463 ENST00000588099.1 ENST00000321919.14 upstream downstream duplicates(3) GACAAGCCGTACACCTGCCCCGAATGTGGCAAAGGCTTCAGCAAGACGTCCCACTTGACCAAcCACCAGCGCACACACACGGGCGAGCGGCCcTACAAGTG...ACAGCATGCGAGATTTAGGCCACCgCTGGCCAACAGAACGTCCCTCATGATGGACATGCTCTCTATCTGTG|GATCTCACCATCCCGGAGTCTAGTACCGTGAAGGGGATGATGGCCGGACCGATGGCCGCGTTTAA...TCCTCATTTCCATCATTTCCTGCTAAGCCAAACAGAGAAG___CCAGCTGTCTGTTACCAGGCAATCACGAAGAAGTTGAAAATATGTGAAGAG___GAAACTGGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20887 CRKL::AP3D1 ENSG00000099942.13::ENSG00000065000.20 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE TRUE 1941 TRUE 3573 TRUE 1347 CRKL ENSG00000099942.13 protein_coding + + chr22:20917407-20953747:+ chr22:20934244:+ chr22:21271695-21308035:+ chr22:21288532:+ AP3D1 ENSG00000065000.20 protein_coding - - chr19:2100988-2164468:- chr19:2138714:- chr19:2100987-2164467:- chr19:2138713:- chr22:20943084,chr22:20943085 chr19:2151061,chr19:2151060 NA NA chr22:21297372,chr22:21297373 chr19:2151060,chr19:2151059 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SH2_domain(100%),SH3_domain(100%),Variant_SH3_domain(38%)|AP-3_complex_subunit_delta-1_(100%),Adaptin_N_terminal_region(99%) SH2(100%),SH3_1(100%),SH3_2(5%),SH3_9(100%)|AP3D1(100%),Adaptin_N(63%),Cnd1(100%) 130 78 76 725 486 ENST00000354336.8 ENST00000643116.3 downstream downstream duplicates(25),inconsistently_clipped(6),low_entropy(1),mismatches(14) GATCCTCACCACACGGAAAGCATGGAAATAGGAATTCCAACAGTTATGGGATCCCAGAACCTGCTCATGCATACGCTCAACCTCAGACCACAACTCCTCTACCTGCAGTTTCCGGTTCTCCTGGGGCAGCAATCACCCCTTTGCCATCCACACAGAATGGACCTGTCTTTGCGAAAGCAATCCAGAAAAGAGTACCCTGTGCTTATGACAAGACTGCCTTGGCATTAGAG|GCAAAATACATATCTCAGTGCATTGATGAGATCAAGCAGGAGCTGAAGCAGGACAACATAGCGGTGAAGGCGAACGCGGTCTGCAAGCTGACGTAT___TTACAGATGTTGGGATACGACATCAGCTGGGCCGCCTTCAACATCATAGAAGTGATGAGTGCCTCC SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALE|AKYISQCIDEIKQELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20888 CRKL::AP3D1 ENSG00000099942.13::ENSG00000065000.20 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 3573 TRUE 1347 CRKL ENSG00000099942.13 protein_coding + + chr22:20917407-20953747:+ chr22:20934244:+ chr22:21271695-21308035:+ chr22:21288532:+ AP3D1 ENSG00000065000.20 protein_coding - - chr19:2100988-2164468:- chr19:2137091:- chr19:2100987-2164467:- chr19:2137090:- chr22:20943084,chr22:20943085 chr19:2151061,chr19:2151060 NA NA chr22:21297372,chr22:21297373 chr19:2151060,chr19:2151059 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none SH2_domain(100%),SH3_domain(100%),Variant_SH3_domain(38%)|AP-3_complex_subunit_delta-1_(100%),Adaptin_N_terminal_region(89%) SH2(100%),SH3_1(100%),SH3_2(5%),SH3_9(100%)|AP3D1(100%),Adaptin_N(58%),Cnd1(100%) 1 1 11 725 1179 ENST00000354336.8 ENST00000643116.3 downstream downstream duplicates(1) GGAACAAGGATGGCCGGGTTGGGATGATTCCTGTCCCTTATGTCGAAAAGCTTGTGAGATCCTCACCACACGGAAAGCATGGAAATAGGAATTCCAACAGTTATGGGATCCCAGAACCTGCTCATGCATACGCTCAACCTCAGACCACAACTCCTCTACCTGCAGTTTCCGGTTCTCCTGGGGCAGCAATCACCCCTTTGCCATCCACACAGAATGGACCTGTCTTTGCGAAAGCAATCCAGAAAAGAGTACCCTGTGCTTATGACAAGACTGCCTTGGCATTAGAG|CGAATTGGCTACCTCGCTGCTTCCCAGAGCTTTCACGAAGGCACCGACGTCATCATGCTGACCACCAATCAGATCCGTAAG___GACTTGAGCAGCCCCAGCCAGTACGACACAGGTGTTGCACTGACGGGTCTGTCCTGC...___ATGTCACACACCAAGC NKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALE|RIGYLAASQSFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20895 MDGA2::LINC01191 ENSG00000139915.22::ENSG00000234199.3 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MDGA2 ENSG00000139915.22 protein_coding - - chr14:46840092-47675605:- chr14:47471075:- chr14:47309295-48144808:- chr14:47940278:- LINC01191 ENSG00000234199.3 lncRNA + + chr2:113970719-114007304:+ chr2:114007019:+ chr2:114728296-114764881:+ chr2:114764596:+ chr14:47459587,chr14:47459597 chr2:113985378,chr2:113985370 NA NA chr14:47928790,chr14:47928800 chr2:114742955,chr2:114742947 NA NA sense sense unknown intron exon/splice-site translocation high none none none 4 7 2 21 83 unknown ENST00000663402.1 upstream upstream duplicates(2),mismatches(1) AAgAGCCATCTACCAaGTACCTGGCAAGATACAAAAGAAAAAAAACAGACACACTTATTCCTTGCACTATCAACTCACAATATTTGAGGACACTAAAACAGTG|GCAGCAGTGAGGATGCCAGAGTTCATGGGTTTCTAGAAGACAAGTTTTCAACTGCAGATACAAACATCAGGACGTCAATGTATCTGCTAGGAGACACCCGGACAGTGTTGAGAACACAGAACCTGGAGGCTAAACCCCCAGCTTTCTATGCCAGCTGAGAGTCTGTGGGCACATTACTCAGCGTCTCTGAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20896 CCDC93::MDGA2 ENSG00000125633.11::ENSG00000139915.22 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC93 ENSG00000125633.11 protein_coding - - chr2:117915478-118014133:- chr2:117939029:- chr2:118673054-118771709:- chr2:118696605:- MDGA2 ENSG00000139915.22 protein_coding - - chr14:46840092-47675605:- chr14:47471172:- chr14:47309295-48144808:- chr14:47940375:- chr2:117937428,chr2:117937428,chr2:117937428,chr2:117937428,chr2:117937430 chr14:47471933,chr14:47471945,chr14:47471946,chr14:47471920,chr14:47471924 NA NA chr2:118695004,chr2:118695004,chr2:118695004,chr2:118695004,chr2:118695006 chr14:47941136,chr14:47941148,chr14:47941149,chr14:47941123,chr14:47941127 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none CCDC93__coiled-coil_domain(100%)|Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),MAM_domain__meprin/A5/mu(100%) CCDC93_CC(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),MAM(100%),ig(100%) 5 3 4 113 13 ENST00000319432.9 unknown upstream downstream none ATTTTGCACCGCAAGATTGATGAAGTCCCTAGCCGTGCCGAGCTAATACAGTATCAGAAGAGATTTATTGAACTCTACCGCCAGA___TTTCAGCAGTGCACAAAGAAACCAAGCAGTTCTTCACTTTATATAATACCCTGGATGATAAAAAGGTTTATTTGGAAAAAGAG|CCATCTACCAaGTACCTGGCAAGATACAAAAGAAAAAAAACAGACACACTTATTCCTTGCACTATCAACTCACAATATTTGAGGACACTAAAACAGTGGTGAGTATAATTTACAACCTCACCTCCAATACCACCCCAAGTAGAGAAGTCCATAATCTTCCCATATTTCTGCCCATTGCC ILHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKE|pstkylarykrkktdtlipctinsqylrtlkqw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20898 SUSD6::RAD51B ENSG00000100647.8::ENSG00000182185.19 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 3575 FALSE NA SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69658713:+ chr14:70078313-70181861:+ chr14:70125430:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68291884:+ chr14:68286496-69196935:+ chr14:68758601:+ chr14:69703650,chr14:69703649 chr14:67924950,chr14:67924946 NA NA chr14:70170367,chr14:70170366 chr14:68391667,chr14:68391663 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Rad51(33%) |DnaB_C(0%),Rad51(27%),RecA(0%) 1 3 4 128 80 ENST00000342745.5 ENST00000488612.5 downstream upstream mismatches(3) CTGGATTTTAAATTTTTTCTTTTTAAAAAAACTTGGACGGATAAAAGATGTGCCATGGCAGGATAGCACCAAAGAGCACCTCAGTGTTTGCCGTGGCCTCCGTGGGACATGGAGTGTTCCTTCCGCTAGTGATCCTTTGCACCCTGCTTGGAGACGGACTTGCTTCCG|GTTATCTTGACGAATCAGATTACAACCCATCTGAGTGGAGCCCTGGCTTCTCAGGCAGACCTGGTGTCTCCAGCTGATGATTTGTCCCTGTCTGAAG___GCACTTCTGGATCCAGCTGTGTGATAGCCGCACTAGGAAATACCTGGAGTCACAGTGTGAATACCC...___ATTCTTATTGCCAA MCHGRIAPKSTSVFAVASVGHGVFLPLVILCTLLGDGLAS|gyldesdynpsewspgfsgrpgvss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 20899 CASC3::SEPTIN9-DT ENSG00000108349.17::ENSG00000263718.3 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40162153:+ chr17:38296571-38328424:+ chr17:38318406:+ SEPTIN9-DT ENSG00000263718.3 lncRNA - + chr17:77257735-77282054:- chr17:77259916:+ chr17:75253817-75278136:- chr17:75255998:+ chr17:40162368,chr17:40162367 chr17:77259298,chr17:77259294 NA NA chr17:38318621,chr17:38318620 chr17:75255380,chr17:75255376 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none CASC3/Barentsz_eIF4AIII_binding(56%)| Btz(27%)| 2 1 5 247 6 ENST00000264645.12 unknown downstream upstream mismatches(5) TCAGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAGAAGAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCAAAGTGGGGA...GAGgGCACAGAGCCTGTGGAGAACAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGATCGGAAGAATCCAGCATACATACCTCGGAAAGGGCTCTTCTTTGAGCATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAG|GAGCGTGCATCACCTGTGAGCTTTGGATCACCGAGACTGTGGGTCCTGACCCATTATTCATGCATTTGTAGAATTTCC...CAGAAACTGGCCTGAGGACCATACTTGCCAATCCTCAGTGCCCAGAGAACGAGGTGAACAAGTAATCCTGCTCCTTTTATCTTTTTGAGACGGAATCTCGCTCTATCACCCAGGCTGGAGcGTGGTAGCATGGTCTCACCACAACCTCCGCCTCCCAGGTTCAAGTGATTCTCC EgTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVr|svhhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20903 CLTCL1::NRXN1 ENSG00000070371.16::ENSG00000179915.25 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 3577 TRUE 1348 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19253959:- chr22:19166986-19279242:- chr22:19241482:- NRXN1 ENSG00000179915.25 protein_coding - - chr2:49918503-51225575:- chr2:49982192:- chr2:50145641-51452713:- chr2:50209330:- chr22:19247028,chr22:19247032 chr2:49998672,chr2:49998673 NA NA chr22:19234551,chr22:19234555 chr2:50225810,chr2:50225811 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Clathrin_propeller_repeat(41%)|Syndecan_domain(100%) Clathrin_propel(1%)|Syndecan(100%) 1 0 1 4 2 ENST00000427926.6 unknown upstream downstream none AATGAAGGCTCATACTATGGCAGAAGAAGTGATTTTCTGGAAATGGGTTTCTGTGAACACTGTTGCCTTGGTGACCGAGACCGCGGTCTACCACTGGAGCA...GTTTGATAGACATACCAGTCTGGTGGGCTGCCAGGTGATTCACTACCGGACTGATGAGTACCAGAAGTGGCTGCTGCTCGTAGGCATCTCGGCTCAG|ATTTATCAATCTTCTATCTCTCCAAATGAAAGACATTGTGTTTAATAATTGAATTGGATGACCCGGCATGTCCAAGGCTGGTGTGACTATCTGCAGGAAATGGTTGGAGAAGAATCTGG FDRHTSLVGCQVIHYRTDEYQKWLLLVGISAQ|iyqssispnerhcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20904 CLTCL1::NRXN1 ENSG00000070371.16::ENSG00000179915.25 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 3577 TRUE 1348 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19253959:- chr22:19166986-19279242:- chr22:19241482:- NRXN1 ENSG00000179915.25 protein_coding - - chr2:49918503-51225575:- chr2:49943791:- chr2:50145641-51452713:- chr2:50170929:- chr22:19247028,chr22:19247032 chr2:49998672,chr2:49998673 NA NA chr22:19234551,chr22:19234555 chr2:50225810,chr2:50225811 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Clathrin_propeller_repeat(41%)|Syndecan_domain(100%) Clathrin_propel(1%)|Syndecan(100%) 1 0 0 4 0 ENST00000427926.6 ENST00000406316.6 upstream downstream none AGCATGGAAGGTGACTCCCAGCCCATGAAGATGTTTGATAGACATACCAGTCTGGTGGGCTGCCAGGTGATTCACTACCGGACTGATGAGTACCAGAAGTGGCTGCTGCTCGTAGGCATCTCGGCTCAG|ACCACAGATGACATCCTTGTGGCCTCAGCAGAGTGTCCCAGCGATGATGAGGACATTGAC SMEGDSQPMKMFDRHTSLVGCQVIHYRTDEYQKWLLLVGISAQ|TTDDILVASAECPSDDEDI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 20905 VEPH1::ENSG00000242536 ENSG00000197415.12::ENSG00000242536.2 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VEPH1 ENSG00000197415.12 protein_coding - - chr3:157259742-157533619:- chr3:157313621:- chr3:156977531-157251408:- chr3:157031410:- ENSG00000242536 ENSG00000242536.2 lncRNA - + chr3:157814822-158088997:- chr3:157939911:+ chr3:157532611-157806786:- chr3:157657700:+ chr3:157288121,chr3:157288127 chr3:157928937,chr3:157928931 NA NA chr3:157005910,chr3:157005916 chr3:157646726,chr3:157646720 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none Laminin_G_3(100%),Pentaxin(100%)| 0 1 1 25 1 ENST00000362010.7 unknown upstream upstream none GTCATTCTGTGCAATTCCTCAGAGCTCTGTGGGAGAAGACCCAGGCAGGGGGTGCTCACAGCTTTGAAACTGCCATGATGGAGTCCACGTTTCCACAGCAGAAG|GATGAAGAATAAAGAAAACgTACCATGAATGCTCAAGAGAATGAAGACTGTCCCTAATACTTGGACTCACAGAGCTGAAGATTATGAGATTATGAACTCTCCCTCTTGCTCTCCTATGGTTTAAAAGACTTATGATTGTCATACAGCTAGCCAGAGGGCAAGACAGGCTTGGGGATCTAGGTCTGTTACAACTGCTG HSVQFLRALWEKTQAGGAHSFETAMMESTFPQQK|dee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20908 TXNRD2::TEFM ENSG00000184470.21::ENSG00000172171.11 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TXNRD2 ENSG00000184470.21 protein_coding - - chr22:19875517-19941820:- chr22:19902299:- chr22:19863040-19929343:- chr22:19889822:- TEFM ENSG00000172171.11 protein_coding - - chr17:30897336-30906238:- chr17:30899393:- chr17:29224354-29233256:- chr17:29226411:- NA NA NA NA NA NA NA NA sense sense unknown intron CDS translocation medium none Pyridine_nucleotide-disulphide_oxidoreductase(55%)| FAD_binding_2(100%),GIDA(100%),Pyr_redox(57%),Pyr_redox_2(64%)| 7 6 8 15 175 ENST00000494454.5 ENST00000581216.6 upstream downstream mismatches(2) GAAAAGTCAAGTACTTTAACATCAAAGCCAGCTTTGTTGACGAGCACACGGTTTGCGGCGTTGCCAAAGGTGGGAAAGAG___ATTCTGCTGTCAGCCGATCAC...GGAATCACAAGTGATGACATCTTCTGGCTGAAGGAATCCCCTGGAAAAAC___...CAATAGGGAGACCAGCTGTCCTCCTGGGGCTTGTTACCAGACTGCAAAGCCCCCGCCACCTCTCTGTGTGCGTCCCTGTGGCTAAGACATGACAAG___CCTGCCCTGTGATTAGGCTCATC|CTGATGATTGGTGACTCCCGGACTAGTGGAAAAGAGCTAGTGAAGCAGTTTCTCTTCGATTCTATACTGAAGGCGGATCCTCGGGTGTTCTTCCCATCAGATAAAATAGTTCACTACAGACAGATGTTTTTATCTACTGAACTACAAAGAGTAGAAGAGCTTTATGATTCATTATTACAAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20909 TXNRD2::ENSG00000275185 ENSG00000184470.21::ENSG00000275185.1 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TXNRD2 ENSG00000184470.21 protein_coding - - chr22:19875517-19941820:- chr22:19902299:- chr22:19863040-19929343:- chr22:19889822:- ENSG00000275185 ENSG00000275185.1 lncRNA + - chr17:30899110-30899651:+ chr17:30899393:- chr17:29226128-29226669:+ chr17:29226411:- NA NA NA NA NA NA NA NA sense antisense unknown intron exon translocation/5'-5' medium none Pyridine_nucleotide-disulphide_oxidoreductase(55%)| FAD_binding_2(100%),GIDA(100%),Pyr_redox(57%),Pyr_redox_2(64%)| 7 5 7 15 175 ENST00000494454.5 unknown upstream downstream mismatches(2) GAAAAGTCAAGTACTTTAACATCAAAGCCAGCTTTGTTGACGAGCACACGGTTTGCGGCGTTGCCAAAGGTGGGAAAGAG___ATTCTGCTGTCAGCCGATCAC...GGAATCACAAGTGATGACATCTTCTGGCTGAAGGAATCCCCTGGAAAAAC___...CAATAGGGAGACCAGCTGTCCTCCTGGGGCTTGTTACCAGACTGCAAAGCCCCCGCCACCTCTCTGTGTGCGTCCCTGTGGCTAAGACATGACAAG___...AAGCCTGCCCTGTGATTAGGCTCATC|CTGATGATTGGTGACTCCCGGACTAGTGGAAAAGAGCTAGTGAAGCAGTTTCTCTTCGATTCTATACTGAAGGCGGATCCTCGGGTGTTCTTCCCATCAGATAAAATAGTTCACTACAGACAGATGTTTTTATCTACTGAACTACAAAGAGTAGAAGAGCTTTATGATTCATTATTACAAGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20915 PIP4K2B::PRKAR2A ENSG00000276293.5::ENSG00000114302.17 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38780447:- chr17:36921944-36956379:- chr17:36936700:- PRKAR2A ENSG00000114302.17 protein_coding - + chr3:48744597-48847874:- chr3:48814639:+ chr3:48782030-48885307:- chr3:48852072:+ chr17:38780031,chr17:38780039 chr3:48807893,chr3:48807885 NA NA chr17:36936284,chr17:36936292 chr3:48845326,chr3:48845318 NA NA sense antisense stop-codon intron intron translocation/5'-5' medium none Phosphatidylinositol-4-phosphate_5-Kinase(14%)| PIP5K(1%)| 2 0 3 104 5 ENST00000619039.5 unknown upstream upstream none GTTTAAGGAGTATTGCCCCATGGTGTTCCGAAACCTTCGGGAGAGGTTTGGAATTGATGATCAGGATTACCAG___AATTCAGTGACGCGCAGCGCCCCCATCAACAGTGACAGCCAGGGTCGGTGTGGCACGCGTTTCCTCACCACCTACGACCGGCGCTTTGTCATCAAGACTGTGTCCAGCGAGGACGTGGCGGAGATGCACAACATCTTAAAGAAATACCACCAGGTATG|AAAGTTCCATGAGTCTGACATGCACCAGAGTAGAAAATCATTGCTACAAATTGAAAACATATCATAGAATCAGAGGAGTTCAGAGTTTATTCAGCCTTGAAATTGGGGAAGCCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20941 TUBA1C::ENDOV ENSG00000167553.17::ENSG00000173818.17 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1942 TRUE 3582 TRUE 1349 TUBA1C ENSG00000167553.17 protein_coding + + chr12:49188736-49274600:+ chr12:49265184:+ chr12:49582519-49668383:+ chr12:49658967:+ ENDOV ENSG00000173818.17 protein_coding + + chr17:80415165-80438086:+ chr17:80422206:+ chr17:78388965-78411886:+ chr17:78396006:+ chr12:49269367,chr12:49269368 chr17:80415742,chr17:80415740 NA NA chr12:49663150,chr12:49663151 chr17:78389542,chr17:78389540 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Endonuclease_V(59%) |Endonuclease_5(57%) 11 26 2 2438 94 ENST00000301072.11 ENST00000518137.6 downstream upstream duplicates(136) CCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTGTTGCCGTCCCTTCGCCTCCTTCACCGCCGCAGACCCCTTCAAGTTCTAGTCATG|GTCCTTCTTGTGGATGGAAACGGGGTACTCCACCACCGAG___GCTTTGGGGTGGCCTGCCACCTTGGCGTCCTTACAGACCTGCCGTGTGTTGGGGTGGCCAAGAAACTTCTGCAGGTGGATGGGCTGGAGAACAACGCCCTGCACAAGGAGAAG___ATCCGACTCCTGCAGACTCGAG M|VLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKEKIRLLQTR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20942 TUBA1C::ENDOV ENSG00000167553.17::ENSG00000173818.17 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3582 TRUE 1349 TUBA1C ENSG00000167553.17 protein_coding + + chr12:49188736-49274600:+ chr12:49265184:+ chr12:49582519-49668383:+ chr12:49658967:+ ENDOV ENSG00000173818.17 protein_coding + + chr17:80415165-80438086:+ chr17:80421828:+ chr17:78388965-78411886:+ chr17:78395628:+ chr12:49269367,chr12:49269368 chr17:80415742,chr17:80415740 NA NA chr12:49663150,chr12:49663151 chr17:78389542,chr17:78389540 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Endonuclease_V(79%) |Endonuclease_5(61%) 0 1 2 2438 7 ENST00000301072.11 ENST00000517295.6 downstream upstream duplicates(5) CTCCCCCGGACTCCTTGGTAGTCTGTTAGTGGGAGATCCTTGTTGCCGTCCCTTCGCCTCCTTCACCGCCGCAGACCCCTTCAAGTTCTAGTCATG|GTGGTGTATGAGGAGAGCCGCATGGTCAGCCTCACAGCCCCCT...GGCCCgGAGGAGCCACGACCGCAGCACCAGGCCCCTCTACATCTCCGTGGGCCACAGGATGAGCCTGGAGGCCGCTGTGCGCCTGACTTGC M|vvyeesrMVSLTAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20943 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1943 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44343377:+ chr20:42965683-42979878:+ chr20:42972017:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cysteine-rich_secretory_protein_family(56%) |CAP(24%) 10 0 15 421 12 ENST00000316673.9 ENST00000217043.4 downstream upstream duplicates(122),low_entropy(1),mismatches(2) ACGGGCTCCTGGTGGCTGTGCTGCTGCTGTGAGCGGGCCCCTGCTCCTCCATGCCCCCAGCTCTCCGGCTGGGTGGGCTTGGCCATGGTCAGCGTGAACGCGCCCCTCGGGGCTCCAGTGGAGAGTTCTTACG|GTACCGGTCCGTAGTGGATCTCATGAAGTCCTGGTCTGAGGAGAAGTGGCATTACTTGTTTCCGGCCCCAAGGGACTGTAACCCACACTGCCCCTGGCGCTGCGATGGCCCCACCTGCTCCCATTATACCC MVSVNAPLGAPVESSY|gtgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20944 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1944 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44345263:+ chr20:42965683-42979878:+ chr20:42973903:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Cysteine-rich_secretory_protein_family(25%) |CAP(1%) 10 2 12 421 83 ENST00000316673.9 ENST00000217043.4 downstream upstream duplicates(108),mismatches(2) ACGGGCTCCTGGTGGCTGTGCTGCTGCTGTGAGCGGGCCCCTGCTCCTCCATGCCCCCAGCTCTCCGGCTGGGTGGGCTTGGCCATGGTCAGCGTGAACGCGCCCCTCGGGGCTCCAGTGGAGAGTTCTTACG|ATGGTGTGGGCATCCTCCAATCGGCTGGGCTGTGCCATCCACACCTGTAGTAGCATCAGTGTCTGGGGCAACACCTGGCATCGGGCGGCATACCTGGTCTGCAACTATGCCATTAA___GGGCAACTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTG MVSVNAPLGAPVESSY|dgvgilqsaglchphl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20945 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 1945 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44350660:+ chr20:42965683-42979878:+ chr20:42979300:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 10 0 5 421 197 ENST00000316673.9 ENST00000217043.4 downstream upstream duplicates(79),mismatches(2) GCTCCTGGTGGCTGTGCTGCTGCTGTGAGCGGGCCCCTGCTCCTCCATGCCCCCAGCTCTCCGGCTGGGTGGGCTTGGCCATGGTCAGCGTGAACGCGCCCCTCGGGGCTCCAGTGGAGAGTTCTTACG|GGGCAACTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCAGTTATCAAGGCAGCTGCAATAGCAACATGTGCTTCAAGGGGCTGAAATCCAACAAGTTCACGTGGTTCTGAATTTTCTCTGGGCTTTGGTGCGCCTCCAGCTGGGCCTGACCCTCCATGTCCTGCCCTCAAAAAACTGGGTGG MVSVNAPLGAPVESSY|gatglasprtrwesrappvppvikaaaiatcasrg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20948 AHCTF1::ZNF695 ENSG00000153207.16::ENSG00000197472.15 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246907670:- chr1:247002400-247095250:- chr1:247070972:- ZNF695 ENSG00000197472.15 protein_coding - - chr1:246945547-247008093:- chr1:246967792:- chr1:247108849-247171395:- chr1:247131094:- chr1:246906360,chr1:246906363 chr1:246968408,chr1:246968408 NA NA chr1:247069662,chr1:247069665 chr1:247131710,chr1:247131710 NA NA sense sense in-frame CDS CDS/splice-site duplication high none beta-propeller_of_ELYS_nucleoporin(43%)| ELYS-bb(56%)| 0 1 2 203 147 ENST00000648844.2 ENST00000487338.6 upstream downstream duplicates(20) CCTTCTTGTTGACCTATGTTTGGATGACTTGTCATGCAATCAAAATGAAGTTGAAGCATCAG___ATCTTGAAGTTCTAACTGGTATCCCAGCTGAAGTACCAC...AGAAAGTGTAATGAGACAAGGGCGCCATCTGTGTTTCCAGTTA|CCATGTGAAGATGTGCTTGCTTCCCCTTTGCCTTCTGCCATGATTCTAAGTTTCCTGA...ATGTAAAGCCCACAGAACC___GGTCCAGTCGTCGACCATCGAGCTGCTTTGAAGACCCTGCGGAGGTTCCGTCGCTGCTTGAACACAGTGCCTGGACTCCCTG ESVMRQGRHLCFQL|PCEDVLASPLPSAMILSFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20951 ARHGEF40::DHX30 ENSG00000165801.10::ENSG00000132153.15 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3585 TRUE 1351 ARHGEF40 ENSG00000165801.10 protein_coding + + chr14:21070273-21090248:+ chr14:21070399:+ chr14:21538432-21558407:+ chr14:21538558:+ DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47810657:+ chr3:47844399-47891685:+ chr3:47852147:+ chr14:21074482 chr3:47810570 NA NA chr14:21542641 chr3:47852060 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none |DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) |DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%) 1 0 0 28 183 ENST00000298694.9 ENST00000395745.6 downstream upstream none GCGGCGGGAGGGAGGCGGTGGCGCGCCCGGCCCCGCCCGCCCGACCAAGCGTCGGACGCGGCCCGGCGCCGAGCCATG|GATTCCAGCTTTCCCTCCTGGCCA M|dssfpsw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1226 chr3:47849555-47849629:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20952 ARHGEF40::DHX30 ENSG00000165801.10::ENSG00000132153.15 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3585 TRUE 1351 ARHGEF40 ENSG00000165801.10 protein_coding + + chr14:21070273-21090248:+ chr14:21073242:+ chr14:21538432-21558407:+ chr14:21541401:+ DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47810657:+ chr3:47844399-47891685:+ chr3:47852147:+ chr14:21074482 chr3:47810570 NA NA chr14:21542641 chr3:47852060 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation low none |DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%) |DEAD(100%),HA2(100%),Helicase_C(100%),OB_NTP_bind(100%) 1 0 0 184 183 ENST00000298694.9 ENST00000395745.6 downstream upstream none CGGGAGGACGCACTGAGGTACACGCTGGACTTCCTGGTACCAGCCAAGCACCTGCTTGCCAAGGTCCAGCAGGAAGCCTGT|GATTCCAGCTTTCCCTCCTGGCCA REDALRYTLDFLVPAKHLLAKVQQEAC|dssfpsw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1226 chr3:47849555-47849629:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20953 REV3L::TRERF1 ENSG00000009413.17::ENSG00000124496.13 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA REV3L ENSG00000009413.17 protein_coding - - chr6:111299028-111483715:- chr6:111482750:- chr6:111620231-111804918:- chr6:111803953:- TRERF1 ENSG00000124496.13 protein_coding - - chr6:42224931-42452051:- chr6:42363079:- chr6:42192669-42419789:- chr6:42330817:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion medium none DNA_polymerase_family_B__exonuclease_domain(0%)|C2H2-type_zinc_finger(100%),ELM2_domain(100%) DNA_pol_B_exo1(0%)|ELM2(100%),zf-C2H2_6(100%) 3 0 0 12 64 ENST00000422377.5 ENST00000541110.5 upstream downstream duplicates(9) CGAACATGTTTTCAGTAAGGATAGTGACTGCAGACTACTACATGGCCAGCCCGCTGCAGGGGCTGGATACCTGCCAATCCCCCCTCACCCAGGCCCCTGTCAAGAAGGTGCCGGTGGTGCGAGTCTTCGGAGCGACCCCGGCAG|GCCCTGGCTGTGGAGAATGCTGAAGGAAGAAGACGCAGAAGCAGGACGACCC MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPA|gpgcgec* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20960 PRKCI::PHC3 ENSG00000163558.13::ENSG00000173889.16 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKCI ENSG00000163558.13 protein_coding + + chr3:170222424-170305977:+ chr3:170281263:+ chr3:169940212-170023765:+ chr3:169999051:+ PHC3 ENSG00000173889.16 protein_coding - + chr3:170086732-170181749:- chr3:170121148:+ chr3:169804520-169899537:- chr3:169838936:+ chr3:170281531,chr3:170281531 chr3:170114027,chr3:170114024 NA NA chr3:169999319,chr3:169999319 chr3:169831815,chr3:169831812 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PB1_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(26%)| C1_1(100%),PB1(100%),PK_Tyr_Ser-Thr(5%),Pkinase(5%)| 5 13 14 302 27 ENST00000295797.5 unknown downstream upstream duplicates(1),mismatches(2) GAAAAAAGAGCTTGTTAATGATGATGAG___GATATTGATTGGGTACAGACAGAGAAGCATGTGTTTGAGCAGGCATCCAATCATCCTTTCCTTGTTGGGCTGCATTCTTGCTTTCAGACAGAAAGCAG|AAATGTAAAAGCCATCATTAGCTTGGACCACAGAAAAACAAGCAGCAAGCCATGCATGGTGGAGAGCACCTATAGTACCAGCTATTCAGGAGGCTGAGGCAGGATTACATGAGCCCAGGAGTTAGAGGCCAGCCTGGGCAACATAGTGAGACCCTATCTCTTAAAAAAAAGAAAGAAAACAGGCAGCAGAAAAGATCTGAACAGTGAGCAGTGTGCCAACCTCTAATCCTAACATTCATAAATTTAAAAAAATAACACGAAACATTTGTGTTTAGTAAAATACCTAGAATACACAGTAGCTTTGTGAGGAGGCACATACGGG KKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESr|nvkaiisldhrktsskpcmvestystsysgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Protein kinase C iota type AGC PKC PKCi P41743 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20962 SORBS1::TCTN3 ENSG00000095637.23::ENSG00000119977.22 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1947 TRUE 3586 TRUE 1352 SORBS1 ENSG00000095637.23 protein_coding - - chr10:95311771-95561414:- chr10:95561320:- chr10:97071528-97321171:- chr10:97321077:- TCTN3 ENSG00000119977.22 protein_coding - - chr10:95659823-95694143:- chr10:95683629:- chr10:97419580-97453900:- chr10:97443386:- chr10:95550412,chr10:95550414 chr10:95683808,chr10:95683807 NA NA chr10:97310169,chr10:97310171 chr10:97443565,chr10:97443564 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Tectonic_domain_DUF1619(8%) |DUF1619(0%) 0 7 2 67 172 ENST00000306402.10 ENST00000265993.13 upstream downstream none CGGTGAAGTCAGCGCTGAGTCCCAGAAAAACAGAGCGGGGCCAGCTGCAGCGTGTAGTGCGAGTGGGGCGGACGCGCGCAGCCCGCCCGCCCGGCGACCAGCAAG|GCTTTTCAACAGAGCACAGCTGCTTCTCTCACCAGTCCTAGAAGTGGGAATCCTGGCTATATAGTTGGGAAGCCACTCTTGGCTCTGACTGATGATATAAGTTACTCA___ATGACCCTCTTACAGAGCCAGGGTAATGGAAGTTGCTCTGTTAAAAGACATGAAGTGCAGTTTGGAGTGAATGCAATATCTGGATGCAAGCTCAG___GTTGAAGAAGGCAGACTGCAGCCACTTGCAGCAGGAGATTTATCAGACTCTTCATGGAAGGCCCAGACCAGAGTATGTTGCCATCTTTGGTAATGCTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20963 SORBS1::TCTN3 ENSG00000095637.23::ENSG00000119977.22 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3586 TRUE 1352 SORBS1 ENSG00000095637.23 protein_coding - - chr10:95311771-95561414:- chr10:95561320:- chr10:97071528-97321171:- chr10:97321077:- TCTN3 ENSG00000119977.22 protein_coding - - chr10:95659823-95694143:- chr10:95664300:- chr10:97419580-97453900:- chr10:97424057:- chr10:95550412,chr10:95550414 chr10:95683808,chr10:95683807 NA NA chr10:97310169,chr10:97310171 chr10:97443565,chr10:97443564 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 2 0 67 220 ENST00000306402.10 ENST00000680353.1 upstream downstream none GCGCGCAGCCCGCCCGCCCGGCGACCAGCAAG|GATTCTCAGCAAGTTACAGAAGTATCTTTGACAACTCTTGTGAACTTTGTGGACATTACCCAGAAGCCA...AATGGCCATTCGACTTCTTTCCCTTCAAAGTGGCATTCAGCAGAGGAGTATTCTCTCAAAAATGCTCAGTCTCTCCCATCCTTATCCTGTGCCTCTTACTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20965 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1948 TRUE 3587 TRUE 1353 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 9 10 11 152 55 ENST00000582329.1 ENST00000583527.1 downstream downstream duplicates(2),mismatches(3) GGCAAGTTCCCACAG___...CTTGCAGTTTCCAGTAAT...ATTTGAACCTAGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|GAACGAGGTCTTGCTATGTTGTCCAAACTGGTCTCAAACTCCTGGGCTCAAAGTCTTCGCACCTTGGACTCCCAAAGTGTTAGGGTTACAGGTATCAGCCACCATGCCTGCCTGTTTCTCTCTCTCTCTCTCTCTCTCTaTaT?T?TATATATATATACACACATATATATATTTTTTTAGGGTTAGTCAAGTGAAGCAGTGGGAGCAGAGAACGAATGCTCTTCTTTATATAAAAATGCAAATAAATGTGGAAGAAATGTTAGAAAATTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20966 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE TRUE 1949 TRUE 3587 TRUE 1353 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 5 7 2 152 38 ENST00000582329.1 ENST00000585268.1 downstream downstream duplicates(1),mismatches(2) AGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|TCGCTCTGTCACCCAGGCTAGAGTGCAGTGACACAATCATAGtTCACTACAGCCTCAGACTCCTGGGCTCAAGAGATCCTCCCACCTTGGTCTTCCAAAGTACTAAGATTACAAGTGTGAGCCACTGCACTCAGCCCTCTGTGAGATTTTAAAAACAATTTTTACACATCTAACATGCAGATTTTGGC...A unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20967 SUZ12P1::CRLF3 ENSG00000264538.8::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3588 TRUE 1354 SUZ12P1 ENSG00000264538.8 transcribed_unprocessed_pseudogene + + chr17:30731886-30776402:+ chr17:30769965:+ chr17:29058904-29103420:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 9 10 10 152 55 ENST00000578195.6 ENST00000583527.1 downstream downstream duplicates(1),mismatches(1) CCCTTGCAGTTTCCAGTAATGAATTTGAACCTAGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|GAACGAGGTCTTGCTATGTTGTCCAAACTGGTCTCAAACTCCTGGGCTCAAAGTCTTCGCACCTTGGACTCCCAAAGTGTTAGGGTTACAGGTATCAGCCACCATGCCTGCCTGTTTCTCTCTCTCTCTCTCTCTCTCTCTCT?T?TATATATATATACACACATATATATATTTTTTTAGGGTTAGTCAAGTGAAGCAGTGGGAGCAGAGAACGAATGCTCTTCTTTATATAAAAATGCAAATAAATGTGGAAGAAATGTTAGAAAATTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20968 SUZ12P1::CRLF3 ENSG00000264538.8::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3588 TRUE 1354 SUZ12P1 ENSG00000264538.8 transcribed_unprocessed_pseudogene + + chr17:30731886-30776402:+ chr17:30769965:+ chr17:29058904-29103420:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 7 2 152 38 ENST00000578195.6 ENST00000585268.1 downstream downstream duplicates(1),mismatches(2) AGTAACAGCCACATGGTGAAGTCTTACTCGTTGCTATTTAGAGTGACTCGTCCAAGAAGAAGAGAGTTTAATGGAATGATTAATGGAGAAACCATGAAAATATTG___ATGTCAGTGAAGAGCTTCCAGCCAGAAGAAAATGAAATCGTGAGGATGGGGAAAAGACATTTGTTGCACAAATGACAGTATTTGATAAAAACAG|TCGCTCTGTCACCCAGGCTAGAGTGCAGTGACACAATCATAGtTCACTACAGCCTCAGACTCCTGGGCTCAAGAGATCCTCCCACCTTGGTCTTCCAAAGTACTAAGATTACAAGTGTGAGCCACTGCACTCAGCCCTCTGTGAGATTTTAAAAACAATTTTTACACATCTAACATGCAGATTTTGGC...A unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20969 NCKAP1::ENSG00000287621 ENSG00000061676.16::ENSG00000287621.1 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCKAP1 ENSG00000061676.16 protein_coding - - chr2:182909115-183038858:- chr2:182916600:- chr2:183773843-183903586:- chr2:183781328:- ENSG00000287621 ENSG00000287621.1 lncRNA + - chr2:183253652-183495501:+ chr2:183304671:- chr2:184118380-184360229:+ chr2:184169399:- chr2:182911277,chr2:182911282 chr2:183306433,chr2:183306435 NA NA chr2:183776005,chr2:183776010 chr2:184171161,chr2:184171163 NA NA sense antisense unknown 3'UTR intron duplication/5'-5' medium none Nck-associated_protein_1(100%)| Nckap1(100%)| 3 3 4 8 11 ENST00000361354.9 unknown upstream downstream duplicates(1) GAGTATTATAATATCAGAACTTCCACTCATGCAAATGTAACATTTGTGTGTTAGTCTATTCTATAGCTCTGATCGGAGTCTTTATCTTAAATGGGAAAGATTATTTTCCCTGTCATGTAACTTTAACAGAAAACGATGCTAAAATTAATTTTAAGACTGCTCTATACTATATGTATGTTATACTATATTTTTATATACTATACACAAAAATGTATAAGATGTAAAGCTTGTATTTTCAAATGTTATTGCAGTATCCAGAACAATTGCGACAATTGCTCTTGGAAGCTTCTGTGCTTTTCCACATGCTGTTCCCTGTCTCTGGAATGGAATGTTCTCTTATTCTGGCTGGCAAACTCCTGAACATAATGTAAACA|GTCTTCAGCAGCAGCAAGGGCAGAAGACCAAATGAGGAAGGGGCTGCCACAATGGTGGATAGTCTACTGCTCACAAAAGCACCTGCTGAGCTTCTCCCAATTCTGGATTCCTGCCATGCAGCAAAGGTGAAGAGTCAGGCAAGCAAGGCCACAGGGC...___ATTTGCTGGCAAGATGGCTGAgTAGGAACAGCTCCGGTCTGCAGCTCCCAGCGAGATCAACGCAGAAGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20971 SPRY1::SPATA5 ENSG00000164056.11::ENSG00000145375.9 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPRY1 ENSG00000164056.11 protein_coding + + chr4:123396795-123403760:+ chr4:123398513:+ chr4:124317950-124324915:+ chr4:124319668:+ SPATA5 ENSG00000145375.9 protein_coding + + chr4:122923070-123319433:+ chr4:123256016:+ chr4:123844225-124240588:+ chr4:124177171:+ chr4:123398954,chr4:123398931 chr4:123233745,chr4:123233719 NA NA chr4:124320109,chr4:124320086 chr4:124154900,chr4:124154874 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |AAA+_lid_domain(57%),ATPase_family_associated_with_various_cellular_activities_(AAA)(6%) |AAA(0%),AAA_lid_3(47%) 0 5 0 8 23 ENST00000622283.1 ENST00000274008.5 downstream upstream none GCGGCACGTGCACGCCGCCGCCCGCACCAGGACCTGGGCCGGGTCGCACGGCTTGGCCCCCGGCCACCGCTTCGGCCTAG|GCTTTGATGCGGCCTGGAAGAATTGATAGAATCATCTATGTGCCTTTACCGGATGCAGCAACAAGAAGGGAAATATTTAAGCTGCAGTTTCACTCCATGCCTGTCAGTAATGAAGTTGACCTGGATGAACTCATCCTTCAAACCGAC...TGGAAGAAGACATTCAAGCCAATCTCATCATGAAAAGACATTTCACTCAGGCCTTGAGCACTGTGACACCTAGAATTCCTGAGTCATTGAGACGTTTTTATGAAGATTATCAAGAGAAGAGTGGGCTGCATACACTCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 20989 RICTOR::FYB1 ENSG00000164327.14::ENSG00000082074.19 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE TRUE 1950 TRUE 3589 TRUE 1355 RICTOR ENSG00000164327.14 protein_coding - - chr5:38937920-39074402:- chr5:39074111:- chr5:38938022-39074504:- chr5:39074213:- FYB1 ENSG00000082074.19 protein_coding - - chr5:39105252-39274528:- chr5:39141141:- chr5:39105354-39274630:- chr5:39141243:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Helically-extended_SH3_domain(100%),Variant_SH3_domain(100%) |SH3_2(100%),hSH3(100%) 2 67 31 101 150 ENST00000357387.8 ENST00000646045.2 upstream downstream duplicates(41),mismatches(2) CGGCGATCGGCCGCGGCCGCTCTCTGAAGAACCTCCGAGTACGAG___GGCGGAATGACAGCGGCGAGGAGAACGTCCCGCTGGATCTGACCCGAG|AAGCCCTGTCAATGAAGACAATCAAGATGGTGTCACGCACTCTGATG___GTGCTGGAAATCTAGATGAG___GAACAAGACAGTGAAGGAGAAACATATGAAGACAT___AGAAGCATCCAAAGAAAGAGAGAAGAAAAGGGAAAAGGAAGAAAAGAAGAGGTTAGAGCTGGAGAAAAAGGAACAGAAAGAGAAAGAAAAGAAAGAACAAGAAATAAAGAAGAAATTTAAA___CTAACAGGCCCTATTCAAGTCATCCATCTTGCAAAAGCTTGTTGTGATGTCAAAGGAGGAAAGAATGAACTGAGCTTCAAGCAAGGAGAGCAAATTGAAATCATCCGCATCACAGACAACCCAGAAGGAAAATGGTTGGGCAGAACAGCA AIGRGRSLKNLRVRGRNDSGEENVPLDLTR|ealsmktikmvsrtlmvlei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rapamycin-Insensitive Companion of mTOR 1 lung SCC epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 20990 RICTOR::FYB1 ENSG00000164327.14::ENSG00000082074.19 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3589 TRUE 1355 RICTOR ENSG00000164327.14 protein_coding - - chr5:38937920-39074402:- chr5:39074329:- chr5:38938022-39074504:- chr5:39074431:- FYB1 ENSG00000082074.19 protein_coding - - chr5:39105252-39274528:- chr5:39141141:- chr5:39105354-39274630:- chr5:39141243:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Helically-extended_SH3_domain(100%),Variant_SH3_domain(100%) |SH3_2(100%),hSH3(100%) 0 3 0 79 150 ENST00000357387.8 ENST00000646045.2 upstream downstream mismatches(1) CGGCGATCGGCCGCGGCCGCTCTCTGAAGAACCTCCGAGTACGAG|AAGCCCTGTCAATGAAGACAATCAAGATGGTGTCACGCACTCTGATG___GTGCTGGAAATCTAGATGAG___GAACAAGACAGTGAAGGAGAAACATATGAAGACAT___AGAAGCATCCAAAGAAAGAGAGAAGAAAAGGGAAAAGGAAGAAAAGAAGAGGTTAGAGCTGGAGAAAAAGGAACAGAAAGAGAAAGAAAAGAAAGAACAAGAAATAAAGAAGAAATTTAAA___CTAACAGGCC AIGRGRSLKNLRVR|ealsmktikmvsrtlmvlei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rapamycin-Insensitive Companion of mTOR 1 lung SCC epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 20991 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22127103:+ chr9:21994138-22128102:+ chr9:22127102:+ chr9:21907456,chr9:21907157,chr9:21907158,chr9:21907159,chr9:21907161,chr9:21907165,chr9:21907170,chr9:21907171,chr9:21907172,chr9:21907175,chr9:21907179,chr9:21907185,chr9:21907187,chr9:21907193,chr9:21907195,chr9:21907196,chr9:21907200,chr9:21907209,chr9:21907138,chr9:21907140,chr9:21907141,chr9:21907151,chr9:21907153 chr9:22123037,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317 NA NA chr9:21907455,chr9:21907156,chr9:21907157,chr9:21907158,chr9:21907160,chr9:21907164,chr9:21907169,chr9:21907170,chr9:21907171,chr9:21907174,chr9:21907178,chr9:21907184,chr9:21907186,chr9:21907192,chr9:21907194,chr9:21907195,chr9:21907199,chr9:21907208,chr9:21907137,chr9:21907139,chr9:21907140,chr9:21907150,chr9:21907152 chr9:22123036,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 2 35 42 341 224 ENST00000644715.2 ENST00000650946.1 downstream upstream duplicates(40),low_entropy(2),mismappers(86),mismatches(10) ACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATGTAGTGTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCTACCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGGAGCTGGGATTGCAGGCACCTGCCACCACGCCCAGCTAATTTTTGTAGTTTTGGTAGAGATGGTGTTTCACCATTTTGGCCAGGCTGGTCTTAAACTCCTGACCTTGTGATCCACCTGCCTTCGCCTCCCAAAGTGCTGGTATTACAGGCATG TAVKIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|csvtlsprlecsgvisahcnlcypgssdspasasqgagiagtchhaqlifvvlvemvfhhfgqaglklltl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21004 FAT3::LINC00964 ENSG00000165323.16::ENSG00000249816.8 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAT3 ENSG00000165323.16 protein_coding + + chr11:92224818-92896473:+ chr11:92524948:+ chr11:91957984-92629639:+ chr11:92258114:+ LINC00964 ENSG00000249816.8 lncRNA + + chr8:124823702-124962531:+ chr8:124941463:+ chr8:125835944-125974773:+ chr8:125953705:+ chr11:92600827 chr8:124906089 NA NA chr11:92333993 chr8:125918331 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Cadherin_domain(25%)| Cadherin(38%)| 1 0 1 15 0 ENST00000525166.6 ENST00000657463.1 downstream upstream duplicates(1) CTGGCTAACAGTGTATGCCACAGACAGGGGCGTTGTTCCACTCTACTCCACCATTGAGGTCTACATTGAAGTTGAAGATGTGAATGACAATGCCCCGCTGA...TCAGAACCTATATATTATCCTGTTGTCATGGAAAACTCTCCAAAGGACGTATCTGTCATTCAGATCCAGGCTGAAGATCCTGACTCCAGTTCCAATGAAAA...TACAGGATTACAAGTGGAAATCCTCAGAATTTTTTTGCCATCAATATCAAAACAG|GTGAAGGATCTAAAACCTGAAAAGAGGCCAAATGATTCCTCAAAAC YRITSGNPQNFFAINIKT|gegskt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE FAT atypical cadherin 3 2 SCC, colon adenocarcinoma, gastric adenocarcinoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 21025 PPP1R13L::EXOC3L2 ENSG00000104881.16::ENSG00000283632.4 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45385562:- chr19:45882896-45909607:- chr19:45888820:- EXOC3L2 ENSG00000283632.4 protein_coding - - chr19:45212370-45245407:- chr19:45239061:- chr19:45715628-45748665:- chr19:45742319:- chr19:45382992 chr19:45239219 NA NA chr19:45886250 chr19:45742477 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none Ankyrin_repeats_(3_copies)(100%)|Exocyst_complex_component_Sec6(100%) Ank(100%),Ank_2(100%)|Sec6(100%) 1 1 3 69 4 ENST00000418234.6 ENST00000413988.3 upstream downstream duplicates(3) CAACGcGGAGGGCATaACTGCCTTGCACAACGCCATCTGCGGCGCCAACTACTCTATCGTGGATTTCCTCATCACCGCGGGTGCCAATGTCAACTCCCCCGACAGCCACGGCTG___GACACCCTTGCACTGCGCGGCGTCGTGCAACGACACAGTCATCTGCATGGCGCTGGTGCAGCACGGCGCTGCAATCTTCGCCACCACGCTCAGCGACGGCGCCACCGCCTTCGAGAAGTGCGACCCTTACCGCGAGGGTTATGCTGACTGCGCCACCTACCTGGCAG|GTCCCCACCTGTCAAAATGCCTATCCTGAAGAATCTGGGAGTGTCAGACCCTAAGGTGCCCCGGGCGGGGACCCTGCCCCTGAGGTCCTCTCGGAACCCCTTTGAAGAAGTTTCAGGGCTGGAGGAAGAAGAGGCCGGGGAGCTGGGGTCCCTCCCCAATGGAACATCTTGTCGCCGCCGCGCCACCCTGGAGA___TCCTGAGCCTGATCCAG NaEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA|gphlskcls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21052 ALMS1::RAB11FIP5 ENSG00000116127.20::ENSG00000135631.17 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ALMS1 ENSG00000116127.20 protein_coding + + chr2:73385758-73625166:+ chr2:73455295:+ chr2:73612886-73852293:+ chr2:73682422:+ RAB11FIP5 ENSG00000135631.17 protein_coding - + chr2:73073382-73156721:- chr2:73125621:+ chr2:73300510-73383849:- chr2:73352749:+ chr2:73476485,chr2:73476481 chr2:73117144,chr2:73117137 NA NA chr2:73703612,chr2:73703608 chr2:73344272,chr2:73344265 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Alstrom_syndrome_repeat(100%)| ALMS_repeat(100%)| 34 12 53 204 62 ENST00000613296.6 unknown downstream upstream duplicates(10),mismatches(4) AAAAACCTTCTGCAATGTGAATCCTCACTGAATCATGCTAAAGAAATACTCAGAAATGCAGAGGAAGAGGAAAGCCGGGTACGAGCACATG___CCTGGAATATGAAGTTCAATTTAGCACATGATTGTGGATACTCCATTTCAGAATTAAATGAAGATGACAGGAGGAAAGTAGAAGAGATCAAGGCAGAGTTATTTGGTCATGGAAGAACAACTGACTTGTCCAAG|GGAAAGAAGCACTGCCACCTACAAGCTGCAGAGAGCATTGCTTCTTTCCTGCTTCCCAGATGCCATATTGAAGGAAAGCCACTAAAGACCACCAGGATTGCATCAAAAGGATTCCAGAGCCAACTCAAGATGCTTCTACTGGACAAAGGCACAACAAATTGAGCACCAATGAGAATAACAAGACAAAGATTTGAAATATAGAAGTGTTCCAGAAAATGAATGAAGAAGGAATGATTGAGTTGGAATAGCACCATTTC KNLLQCESSLNHAKEILRNAEEEESRVRAHAWNMKFNLAHDCGYSISELNEDDRRKVEEIKAELFGHGRTTDLSK|gkkhchlqaaesiasfllprchiegkplkttriaskgfqsqlkmllldkgttn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21057 CINP::TECPR2 ENSG00000100865.15::ENSG00000196663.16 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CINP ENSG00000100865.15 protein_coding - - chr14:102341102-102362916:- chr14:102355768:- chr14:102807439-102829253:- chr14:102822105:- TECPR2 ENSG00000196663.16 protein_coding + - chr14:102362941-102502477:+ chr14:102370485:- chr14:102829278-102968814:+ chr14:102836822:- chr14:102355332,chr14:102355334,chr14:102355336 chr14:102372409,chr14:102372410,chr14:102372409 NA NA chr14:102821669,chr14:102821671,chr14:102821673 chr14:102838746,chr14:102838747,chr14:102838746 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 10 20 1 333 34 ENST00000559514.5 unknown upstream downstream duplicates(3),mismappers(1) GCCTCGAAGGAAAATGAAGAAAAGGTGTGTCTGGAATATAACGAGGAACTGGAGAAGCTGTGTGAGGAACTGCAGGCCACCTTGGATGGGTTG|GCACTTTCGTATCTGCTTTAGCTCATGAGATCTCCTAGCAAGCAAGCGGAAGTACTGAGCTCTTCACCA___TAGAGACGGGGTTTCACCGTGTT?GCCAGGATGGTCTCAATCTCCTGATCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACTTGGCCGAGCCCAGGGGTTTGACATCAGCCTGGGCAACATGACAAAACTCTGT ASKENEEKVCLEYNEELEKLCEELQATLDGL|alsyll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21063 RAD18::PRELID3B ENSG00000070950.10::ENSG00000101166.16 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD18 ENSG00000070950.10 protein_coding - - chr3:8775402-8963773:- chr3:8890389:- chr3:8817088-9005457:- chr3:8932073:- PRELID3B ENSG00000101166.16 protein_coding - + chr20:59033145-59042809:- chr20:59037226:+ chr20:57608200-57617864:- chr20:57612281:+ chr3:8827310 chr20:59033175 NA NA chr3:8868995 chr20:57608230 NA NA sense antisense unknown CDS/splice-site CDS translocation/5'-5' high none SAP_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)| SAP(100%),zf-C3HC4(100%),zf-C3HC4_2(100%),zf-RING_UBOX(100%)| 4 3 3 156 796 ENST00000427329.5 unknown upstream upstream duplicates(1) GGTGGATCAGGCTAGAAAAGGATACAAGAAAATTGCTGGAATGTCACAAAAAACAGTAACAATAACAgAAGAAGATGAATCTACAGAAAAGCTATCTTCTG...CAAGAAGTTCTTTCTTCATCAGAATCAGATTCATGCAATAG___TTCCAGTTCAGACATCATAAGAGATCTTTTAGAAGAAGAGGAAGCCTGGGAAGCATCACATAA|GATCAACTACAGAATGTTCTTGCACATATGTTTTCGTTCTTGCTGCACCAATAAG___AGACTTCACAATGGAAGGCAGTCCCCACTCTGTGCTGAGA...TTCCAGAGGGATCTATATGTCTGTCCAACACATCAACTCCAACCACACTTGGGTTCATAGGGTTTGGGTATTTCTGCATTGCAGCTGTTGTAACAGTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21064 LINC01569::CORO7 ENSG00000262468.8::ENSG00000262246.6 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3603 TRUE 1356 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4253647:- chr16:4293944-4303848:- chr16:4303648:- CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4362738:- chr16:4404543-4475706:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1899)(50%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(7%),WD40(0%),WD40_4(47%) 4 1 5 55 126 ENST00000687438.1 ENST00000251166.9 upstream downstream none CCGGACTCCTTCAGCGCGCTGCCTGCCTGCCCAGGGCCTTCCCGGAGAGCAGGTGACGGCGGCCTCCGGGCATGGAGCTCGCGCTGACGAAAGGTTCTGGAAGCCGCCGTAAAAAGTAATCAAGAAACGGGTGACAGGACTTTTC|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21065 LINC01569::CORO7 ENSG00000262468.8::ENSG00000262246.6 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3603 TRUE 1356 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4251322:- chr16:4293944-4303848:- chr16:4301323:- CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4362738:- chr16:4404543-4475706:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1899)(50%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(7%),WD40(0%),WD40_4(47%) 0 4 5 14 126 ENST00000649264.1 ENST00000251166.9 upstream downstream none TAGGGTTTCACCATGTTGGCCAGGCTGGAGTTTTGCCTGTTCTAGAAGCTTGTATCAGTCATACAACAC|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG...CGACTGTGGCGGGTACCCGCAGAGGGCCTGGAAGAGGTGCTCACCACGCCAGAGACTGTGCTCACAG___GCCACACGGAGAAGATCTGCTCCCTGCGCTTCCACCCACTGGCAGCCAATGTGCTGGCCTCGTCCTCCTATGACCTCACTGTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21066 LINC01569::CORO7 ENSG00000262468.8::ENSG00000262246.6 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3603 TRUE 1356 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4252878:- chr16:4293944-4303848:- chr16:4302879:- CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4362738:- chr16:4404543-4475706:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Domain_of_unknown_function_(DUF1899)(50%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(7%),WD40(0%),WD40_4(47%) 0 0 5 18 126 ENST00000650502.1 ENST00000251166.9 upstream downstream duplicates(1),mismappers(1) CCGGCTAATTTTGTACTTATAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGCTCCGCCCGCCTTGGCCTCCCA...AGCTTAGGCGCTCCGTGAATTTTCACAAACTGAACATACACCCAG|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21067 LINC01569::CORO7-PAM16 ENSG00000262468.8::ENSG00000103426.12 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3604 TRUE 1357 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4253647:- chr16:4293944-4303848:- chr16:4303648:- CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4362738:- chr16:4390252-4470495:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1899)(50%),Pam16(100%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(14%),Pam16(100%),WD40(1%),WD40_4(60%) 4 1 5 55 126 ENST00000687438.1 ENST00000575334.5 upstream downstream none CCGGACTCCTTCAGCGCGCTGCCTGCCTGCCCAGGGCCTTCCCGGAGAGCAGGTGACGGCGGCCTCCGGGCATGGAGCTCGCGCTGACGAAAGGTTCTGGAAGCCGCCGTAAAAAGTAATCAAGAAACGGGTGACAGGACTTTTC|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21068 LINC01569::CORO7-PAM16 ENSG00000262468.8::ENSG00000103426.12 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3604 TRUE 1357 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4251322:- chr16:4293944-4303848:- chr16:4301323:- CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4362738:- chr16:4390252-4470495:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1899)(50%),Pam16(100%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(14%),Pam16(100%),WD40(1%),WD40_4(60%) 0 4 5 14 126 ENST00000649264.1 ENST00000575334.5 upstream downstream none TAGGGTTTCACCATGTTGGCCAGGCTGGAGTTTTGCCTGTTCTAGAAGCTTGTATCAGTCATACAACAC|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG...CGACTGTGGCGGGTACCCGCAGAGGGCCTGGAAGAGGTGCTCACCACGCCAGAGACTGTGCTCACAG___GCCACACGGAGAAGATCTGCTCCCTGCGCTTCCACCCACTGGCAGCCAATGTGCTGGCCTCGTCCTCCTATGACCTCACTGTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21069 LINC01569::CORO7-PAM16 ENSG00000262468.8::ENSG00000103426.12 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3604 TRUE 1357 LINC01569 ENSG00000262468.8 lncRNA - - chr16:4243943-4253847:- chr16:4252878:- chr16:4293944-4303848:- chr16:4302879:- CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4362738:- chr16:4390252-4470495:- chr16:4412739:- chr16:4250663,chr16:4250665 chr16:4363037,chr16:4363037 NA NA chr16:4300664,chr16:4300666 chr16:4413038,chr16:4413038 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Domain_of_unknown_function_(DUF1899)(50%),Pam16(100%),Type_of_WD40_repeat(51%),WD_domain__G-beta_repeat(48%) |ANAPC4_WD40(100%),DUF1899(14%),Pam16(100%),WD40(1%),WD40_4(60%) 1 0 5 18 126 ENST00000650502.1 ENST00000575334.5 upstream downstream duplicates(1),mismappers(1) CCGGCTAATTTTGTACTTATAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGCTCCGCCCGCCTTGGCCTCCCA...AGCTTAGGCGCTCCGTGAATTTTCACAAACTGAACATACACCCAG|GAGGGTTTCTCTTCCCCTCCCAGTTCGCTGACCTCGCCCTCCACGCCCTCCAGCCTGGGGCCCTCACTCTCCAGCACCAGTGGCATCGGGACCAGCCCCAGTTTGAGGTCGCTGCAGAGCCTGCTGG___GCgCCAGTTCCAAGTTCCGCCATGCTCcGGGCACTGTCCTGCACCGAGACAGCCACATCACCAACCTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21078 SLC25A12::ENSG00000232555 ENSG00000115840.14::ENSG00000232555.2 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A12 ENSG00000115840.14 protein_coding - - chr2:171783405-171999859:- chr2:171991347:- chr2:172639915-172864766:- chr2:172856257:- ENSG00000232555 ENSG00000232555.2 lncRNA + - chr2:172137345-172370401:+ chr2:172156552:- chr2:173002073-173235129:+ chr2:173021280:- NA NA NA NA chr2:172835053,chr2:172835058 chr2:173030659,chr2:173030661 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 1 1 109 7 ENST00000484227.5 unknown upstream downstream mismatches(3) GGGAAGCGGCTAGGGCACCCGGGCAAGCAGCAGAACCCGCGGCCGGCTGAGTCCTCTCCAGCCGCGAGAGGCGGGCTCCAGCCGCGGCTCGCGgGCcCcCcCTtAGgCCCCGCGCCCAGGTGGGATGGAAGAAGCCTGTCAG___GTTGTCTGTGTTTTCCCCTGTGAAAGCATTCAGGATCTTAATTTTATGCTGTGGATTCTGAACTTAATAATTTGGCCTGTGAGTCGATCTTTTTAG|GGGGAGCCTTGTGAAGATAAATTTGGTTTAAGCTGGTGGAAGCCATGGATGTGGAAC...AACAAGGGAACTGACTTGTCAAAGCGCACACCAATGAGTAGAGGCAGAACTGGAATCAGAATCCGAGACCTCTCTTGCACCACCCAGCACATGAGGGCTCTCTCCATGGGCATAATCCTCCCTACCTCCTACTTACCTGCCCTGTGCTGTGGGTAATAGATGAATCGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21086 ENSG00000232555::HAT1 ENSG00000232555.2::ENSG00000128708.13 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000232555 ENSG00000232555.2 lncRNA + + chr2:172137345-172370401:+ chr2:172144976:+ chr2:173002073-173235129:+ chr2:173009704:+ HAT1 ENSG00000128708.13 protein_coding + + chr2:171922448-171983686:+ chr2:171976157:+ chr2:172778958-172848600:+ chr2:172841096:+ NA NA NA NA chr2:173030661,chr2:173030659 chr2:172835058,chr2:172835053 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none none 1 0 3 12 1405 ENST00000667725.1 ENST00000264108.5 downstream upstream none GGGCCTGGAGCAATGCGAGCGGGCCCCAGGGAGCGACAGCGGCGTTGGCGCAGCGGCCGAGTGA___GTGGTGGGCCTTTTGATGACAGCTATGGAAAAGTCTTTCCAGAAAAATGCACGTGCACATAAAATTAGAATGTTTCCAAGATACGCATGGACCCTGTGAAACCCACTGAAGATTCCATGGCCCCAG|CGGAAGATCCATCCAAAAGCTATGTGAAATTACGAGACTTTGTGCTTGTGAAGCTTTGTCAAGATTTGCCCTGTTTTTCCCGGGAAAAATTAATGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21101 CORO7::TFAP4 ENSG00000262246.6::ENSG00000090447.12 A2780 SRR8616019 SRR8639176 OVARY carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4395289:- chr16:4404543-4475706:- chr16:4445290:- TFAP4 ENSG00000090447.12 protein_coding - - chr16:4257186-4273075:- chr16:4262701:- chr16:4307187-4323076:- chr16:4312702:- chr16:4394594 chr16:4272588 NA NA chr16:4444595 chr16:4322589 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Domain_of_unknown_function_(DUF1899)(49%),WD_domain__G-beta_repeat(51%)|Helix-loop-helix_DNA-binding_domain(100%) DUF1899(92%),WD40(99%)|HLH(100%) 1 0 2 141 354 ENST00000251166.9 ENST00000573476.1 upstream downstream none ACCTGGTGCAGAGCGCCGTCTGGAGCCGAGATGGAGCCCTGGTGGGCACGGCGTGCAAG___GACAAGCAGCTGCGGATCTTTGACCCCAGAACAAAGCCGCGGGCCTCTCAG|CCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGACCAGGAGCGGCGGATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCCCTCAAGACCCTCATCCCCCACACAGACGGAG LVQSAVWSRDGALVGTACKDKQLRIFDPRTKPRASQ|PCQHSTNPRDSAGPGAADSAGDRQQQRAETHAEHQRGIPVPQDPHPPHRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21111 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1955 TRUE 3611 TRUE 1358 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72553717 chr17:72654559 NA NA chr17:70549857 chr17:70650698 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(34%) |Zip(0%) 9 11 33 337 68 ENST00000648631.1 ENST00000255559.8 upstream downstream duplicates(4),mismatches(3) GGCGCCCGGTCCCTGCCCGCGTCGCGCGCCCACCCCTGGGGACGAGAAGGCGGCCGCCTGAGGACCCCCGCCCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCCCTACGCTCTGGCCTTTGCTGCCGGTGCCATGGTC...GATTTGTAGTGATGATGTCACTGGACGTTGGCCTGGGCTAGGGCTGAGACGCTTCGGACCCCGGGAAAGGCCATACGAAGAAACAGCAGTGGTTGGCTTCTATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21112 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1956 TRUE 3611 TRUE 1358 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72583044:- chr17:70286232-70636611:- chr17:70579183:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72553717 chr17:72654559 NA NA chr17:70549857 chr17:70650698 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(34%) |Zip(0%) 3 0 37 22 68 ENST00000648054.1 ENST00000255559.8 upstream downstream mismatches(2) GGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG___GCATTGGTGCAGCCGC...___ACCAGACTTCTTTAGGGGATCCAGGACTAAGCCGAGGAAGGTGTTTCTGAACCTCAGGGAATCTGTGGCCACTGGCAAGCCAGCGGAAAATTCAG|GAATTTGGCCATTGGAATCGGGATCCAGAATTTCCCCGAGGGCCTGGCTGTCAGCCTTCCCTTGCGAGGGGCAGGCTTCTCCACCTGGAGAGCTTTCTG___GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21113 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3611 TRUE 1358 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72648961:- chr17:70642088-71088851:- chr17:70645100:- chr17:72553717 chr17:72654559 NA NA chr17:70549857 chr17:70650698 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |ZIP_Zinc_transporter(24%) |Zip(0%) 1 0 15 337 84 ENST00000648631.1 ENST00000255559.8 upstream downstream mismatches(2) CCGGTCCCTGCCCGCGTCGCGCGCCCACCCCTGGGGACGAGAAGGCGGCCGCCTGAGGACCCCCGCCCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAG|GTATGGGCAGCTGAGCGGCATGGTGGAGCCCCTGGCCGGGGTCTTTGGTGCCTTTGCCGTGGTGCTGGCTGAGCCCATCCTGCCCTACGCTCTGGCCTTTGCTGCCGGTGCCATGGTCTACGTGGTCATGGACGACATCATCCCCGAAGCCCAGATCAG___TGGTAATGGGAAACTGGCATCCTGGGCCTCCATCCTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21114 AHCY::RTN4 ENSG00000101444.13::ENSG00000115310.19 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHCY ENSG00000101444.13 protein_coding - - chr20:34280268-34311802:- chr20:34291419:- chr20:32868074-32899608:- chr20:32879225:- RTN4 ENSG00000115310.19 protein_coding - - chr2:54972187-55112621:- chr2:55109028:- chr2:55199323-55339757:- chr2:55336164:- chr20:34291070,chr20:34291073 chr2:55109297,chr2:55109297 NA NA chr20:32878876,chr20:32878879 chr2:55336433,chr2:55336433 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none S-adenosyl-L-homocysteine_hydrolase(100%)|Reticulon(100%) AdoHcyase(53%)|Reticulon(100%) 32 4 15 1455 59 ENST00000538132.1 unknown upstream downstream duplicates(5) CGTCACCCTGGGTGCTGAG___GTGCAGTGGTCCAGCTGCAACATCTTCTCCACCCAGGACCATGCGGCGGCTGCCATTGCCAAGGCTGGCATTCCGG___TGTATGCCTGGAAGGGCGAAACGGACGAGGAGTACCTGTGGTGCATTGAGCAGACCCTGTACTTCAAGGACGGGCCCCTCAACATGATTCTGGACGACGGGGGCGACCTCACCAACCTCATCCACACCAAGTACCCGCAGCTTCTGCCAG___GCATCCGAGGCATCTCTGAGGAGACCACGACTGGGGTCCACAACCTCTACAAGATGATGGCCAATGGGATCCTCAAGGTGCCTGCCATCAATGTCAATGACTCCGTCACCAAG|AAATTGTACTTGGAGACGTGTCCAGCTGAGCCTGCTGTCACTTGGAAACGCTGCAGACCTGAAAAAGCTGCTGGCCTTGATCTTCTCTTTGCACAGAGTTTCCTTAGG VTLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK|klyletcpaepavtwkrcrpekaagldllfaqsfl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21115 ELOVL5::KLHL31 ENSG00000012660.14::ENSG00000124743.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1957 FALSE NA FALSE NA ELOVL5 ENSG00000012660.14 protein_coding - - chr6:53267398-53349179:- chr6:53348817:- chr6:53132196-53213977:- chr6:53213615:- KLHL31 ENSG00000124743.6 protein_coding - - chr6:53647916-53665756:- chr6:53652330:- chr6:53512714-53530554:- chr6:53517128:- chr6:53312708,chr6:53312710 chr6:53652587,chr6:53652586 NA NA chr6:53177506,chr6:53177508 chr6:53517385,chr6:53517384 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Kelch_motif(84%) |DUF1668(100%),Kelch_1(31%),Kelch_2(100%),Kelch_4(100%),Kelch_6(9%) 4 16 26 756 26 ENST00000370918.8 ENST00000370905.4 upstream downstream duplicates(3) CGCGGGTCCTAGCCACCGGTGTCTCCTTCTACATCCGCCTCTGCGCCGGCTGCCACCCGCGCTCCCTCCGCCGCCGCCGCCTTGCTGCTGCTCAAAGCTGCTGCCGCCCCTTGGGCTAAAAG|ATACGATCCCCGCTTCAACACCTGGATACACCTGGCCAGCATGAACCAGAAGCGCACGCACTTCAGCCTGAGCGTGTTCAACGGGCTCGTGTACGCCGCGGGCGGCCGCAACGCAGAAGGAAGCCTGGCCTCGCTGGAGTGCTACGTGCCCTCCACCAATCAGTGGCAGCCGAAGACGCCCCTGGAGGTGGCGCGCTGCTGCCACGCTAGCGCGGTCGCCGACGGCCGCGTGCTGGTGACCGGAGGCTACATcGCCAACGCCTACTCGCGCTCTGTGTGCGCCTACGACCCGGCCAGCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21117 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3612 TRUE 1359 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61243020:+ chr14:61654277-62017694:+ chr14:61709738:+ chr14:61735189,chr14:61735190 chr14:61233321,chr14:61233319 NA NA chr14:62201907,chr14:62201908 chr14:61700039,chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none PAS_fold(100%)|C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),C2(100%),CDC50(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 2 3 30 990 7 ENST00000337138.9 ENST00000556778.5 downstream upstream duplicates(4),mismappers(1),mismatches(2) AAGAACTTTTAGGCCGCTCAATTTATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAACTCATCATGATA___TGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|AGAAGTCTAGAAGACTATGAAGTCAAGAGGGATTTGACCTAGACCCGATTTTGGGAAGGCTTCTG-AAAAAgAAAATTACTTTAAAGCTGAAATCTGGCTGGGCACAGTTCACGCCTGTAATCTCAGCACTTTGGGAGGTCAAGGTGGGTGAATCACTTGAGGTCTGGATTTCGAGACCAGCTTGGCCAATATAGCAAAACCCCATCTCTACTACAAATACAAAAAAAATTCACCAGGTGTGGTTGTGCGCACCTGTAGTCCCAGC...CAGAGGTTCGGGATCAACATCCCACACAAGTTCAGCATtCACAACTACAAAGTGCCAACATTCTGCGATCACTGTGGCTCACTGCTCTGGGGAATAATGCG ELLGRSIYEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVr|ev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 21118 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3612 TRUE 1359 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61299711:+ chr14:61654277-62017694:+ chr14:61766429:+ chr14:61735189,chr14:61735190 chr14:61233321,chr14:61233319 NA NA chr14:62201907,chr14:62201908 chr14:61700039,chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none PAS_fold(100%)|C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),C2(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 5 990 1 ENST00000337138.9 ENST00000554835.1 downstream upstream duplicates(1),mismappers(1),mismatches(1) TATGAATATTATCATGCTTTGGACTCTGATCATCTGACCAAAACTCATCATGATA___TGTTTACTAAAGGACAAGTCACCACAGGACAGTACAGGATGCTTGCCAAAAGAGGgGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTTTTCAACTCTACTTTCATCTCCCATGAGACCTTTTTTTGAGACAAGC...TACACCCTCCCAACCTAAAATCAAACTAGAGCTCTGCAATTAGAACATAGCTACAGAAGTTAACAAACTGTATTGTTATTTGATATAAGAAAATGTGATCA YEYYHALDSDHLTKTHHDMFTKGQVTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVr|fstllsspmrpffet NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 21119 HIF1A::PRKCH ENSG00000100644.17::ENSG00000027075.17 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3612 TRUE 1359 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61734285:+ chr14:62162231-62214977:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61391225:+ chr14:61654277-62017694:+ chr14:61857943:+ chr14:61735189,chr14:61735190 chr14:61233321,chr14:61233319 NA NA chr14:62201907,chr14:62201908 chr14:61700039,chr14:61700037 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PAS_fold(100%)|Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PAS(100%),PAS_11(71%),PAS_3(100%),PAS_9(100%)|C1_1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 4 990 59 ENST00000337138.9 ENST00000553726.5 downstream upstream none AAAAGGGTAAAGAACAAAACACACAGCGAAGCTTTTTTCTCAGAATGAAGTGTACCCTAACTAGCCGAGGAAGAACTATGAACATAAAGTCTGCAACATGG...GCTTGCCAAAAGAGGgGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTGGATCTCGAGCCAGAGGGGAAAGTATTTGTGGTAA...GAAG___GGGAGTGTTTGGGAAACAGGGTTATCAGTGCCAAG___TGTGCACCTGTGTCGTCCATAAACGCTGCCATCATCTAATTGTTACAGCCTGTACTTGCCA LAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVr|wissqrgkylw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C eta type AGC PKC PKCh P24723 TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma OVARY,LUNG,UTERUS,STOMACH no_match 62162557,62207906|62205091,62162557|62162557,62162557 FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 61909829,61995793|61995793,61995793|61952220,61857943 FALSE,FALSE|FALSE,FALSE|FALSE,TRUE YES,PARTIALLY,PARTIALLY,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame TRUE Lung,Lung LUNG,LUNG no_match 61741188|61741188|61741188|61738373|61741188,61741188|61741188 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE 61529075|61529075|61525052|61529075|61513940,61529075|61525052 FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 21120 MIR924HG::LINC01477 ENSG00000267374.3::ENSG00000261715.1 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39751329:- chr18:36786881-37380286:- chr18:37331293:- LINC01477 ENSG00000261715.1 lncRNA + - chr18:40066286-40099233:+ chr18:40083791:- chr18:37646250-37679197:+ chr18:37663755:- chr18:39743987,chr18:39743989 chr18:40090575,chr18:40090574 NA NA chr18:37323951,chr18:37323953 chr18:37670539,chr18:37670538 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 12 3 15 59 13 ENST00000670992.1 unknown upstream downstream duplicates(1),mismappers(3),mismatches(1) GAACGGCAGGC?GGAAGTGCTCTAGCAGGGGAGTCTGACCTTGTGAGGGAATACCTGTGTCCCCCCTTTTTTCCCCTTTTTACCCAATAAAACCCTGCCTTACTCACCCTTTAAATCATCTGCGAGCCTaAATTTTCATGGCCGTGGGACGGACAAGAACTTTATCTTCAGCTGAACTAAGAAAAAGTCCTGCAACATTTTTGGCGCGCAATGTGGGGGCACCAGAAGCG___GGCACCGTTGAGCTGTTGCAACTGTTaTGCTG|GTACCAAGAACACAGAATTCCAAAGGACCCAAAGTGAATTGGAGTGCAATGAGACTGAAAAGTACAAG___GAGGGCCTTTTAAACATTCCATCAGGGGCCTGTGGAGGACGTCTGGCGGCGAGTCAATCAAGAAGCAGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21124 LINC02109::LINC02064 ENSG00000259786.7::ENSG00000248391.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC02109 ENSG00000259786.7 lncRNA + + chr5:28809331-29217115:+ chr5:28810148:+ chr5:28809438-29217222:+ chr5:28810255:+ LINC02064 ENSG00000248391.6 lncRNA - + chr5:29304305-29396095:- chr5:29387254:+ chr5:29304412-29396202:- chr5:29387361:+ NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 7 4 4 60 21 ENST00000658190.1 unknown downstream upstream duplicates(2),mismatches(3) GGCGTCCGGTCGTCAAGTTCTGGATCAGGACCCTGTGGAGGTCTCAGGGCGGGCGGTGGGGGCCACTGTGTTCTCCAACGCAAGCACGCGGAGAATGGATTT...GGACGCCTCGCTGCCTTGGGAGACCCTAGTGTAGACACCCCGGTGAAAACGGGCCTGCCCGGGTCCAGGCTGAGCCAGAGTGCGCCCAGGAGTGTTCCAGTCAGAGCCTCCAGTTCTCGAGTCCCAGCGACCCTCGGTCAGACCTGGAAGCCCTCTGGGAGGAGGAGGAGGCCGGGACTGGGCTGCGCGGACACAGCCCCAGCCACCTTCCTACGGAGATGGCGG|ATAGCCAACTTAACATACCTGGTGTCAGGAGTGATTCAAGGATGCAGCTGGAAAAATGTGGATTTGGGACTAGATCTCTCACTACCTGACTGTTAATGATGATCTAATCTTGTAAG___TGTATGGCTGTCTTGAGAAATACATGAATCATGGATCTCTGTTGGATGGGTATTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21125 ENSG00000258964::PRKCH ENSG00000258964.1::ENSG00000027075.17 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3613 TRUE 1360 ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61734285:+ chr14:62200856-62242978:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61237437:+ chr14:61654277-62017694:+ chr14:61704155:+ chr14:61735189,chr14:61735190 chr14:61233321,chr14:61233319 NA NA chr14:62201907,chr14:62201908 chr14:61700039,chr14:61700037 NA NA sense sense unknown exon/splice-site intron duplication high none |C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(100%),C2(100%),CDC50(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 1 10 990 2 ENST00000555937.1 unknown downstream upstream duplicates(2) AGTCACCACAGGACAGTACAGGATGCTTGCCAAAAGAGGTGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTCTTCATCCTGATCGAGGAGAGAATTAACTAAGAGTCTGACAGCTTTTTAAGTCTGACAAGA...CTCTTTCAATCAATCGTCAATCGGAAAATCTTTGAATCCACCTATGACCCAGAAACCTGGAACTTTCTCCCCCAACCCTTACCTCCAGTTGTCCCCCTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21126 ENSG00000258964::PRKCH ENSG00000258964.1::ENSG00000027075.17 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3613 TRUE 1360 ENSG00000258964 ENSG00000258964.1 lncRNA + + chr14:61734138-61776260:+ chr14:61734285:+ chr14:62200856-62242978:+ chr14:62201003:+ PRKCH ENSG00000027075.17 protein_coding + + chr14:61187559-61550976:+ chr14:61299711:+ chr14:61654277-62017694:+ chr14:61766429:+ chr14:61735189,chr14:61735190 chr14:61233321,chr14:61233319 NA NA chr14:62201907,chr14:62201908 chr14:61700039,chr14:61700037 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none |C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(100%),C2(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 1 0 1 990 1 ENST00000555937.1 ENST00000554835.1 downstream upstream none GCTTGCCAAAAGAGGgGGATATGTCTGGGTTGAAACTCAAGCAACTGTCATATATAACACCAAGAATTCTCAACCACAGTGCATTGTATGTGTGAATTACGTTGTGAG|GTTTTCAACTCTACTTTCATCTCCCATGAGACCTTTTTTTGAGACAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C eta type AGC PKC PKCh P24723 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21127 ENSG00000286385::LINC01192 ENSG00000286385.1::ENSG00000241369.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000286385 ENSG00000286385.1 lncRNA - - chr13:82778208-83102335:- chr13:83099293:- chr13:83352343-83676470:- chr13:83673428:- LINC01192 ENSG00000241369.6 lncRNA - - chr3:163109152-163361563:- chr3:163337236:- chr3:162826940-163079351:- chr3:163055024:- chr13:83079568 chr3:163357745 NA NA chr13:83653703 chr3:163075533 NA NA sense sense unknown intron exon/splice-site translocation high none none none 1 3 8 42 22 ENST00000663739.1 ENST00000489012.5 upstream downstream low_entropy(1),mismatches(1) CAGGCAtgtGCCagcAtGCCtgGCTAATTTTTTGTAATTTTTAGTAGAGACGGGGTTTCACTGTGTTGGCCAGGATGATCTCAATCTCCTGTGTCTTTAACTCTTCTTAATTCCCCACTGATGACGAAAATGATAGAAAGCAATAAACCAGATTTGAAATTCAGAGTGAAACATCTAAGATCG___TCTGCAGTGCAGTGGCACGCTCTCTGCAACCTCTGTCTCCCGGGTTCAAACCATTCTCCTGCCTCAATCTCCAGAGTGGCTGATATTACAGGATTCCACCACCAAACCCAG|AGATGAAATCCCACTATTTTGCCCAGGCTCATCTATAACTTCTGAGCTCAAGACATCCTCCTGCTTTGACCTTCCAcAGTGCTGGGATAGGG___GTTTTGTGCAAATATCTGCTGAGTGAACTACTTATTTGAAAATACATCATT...TCATTGAAATCTCAAAGACTACAG___GTGTGGTGCAATTCCATTAGATGAAAGAGATCTACACATTCAGAAGCACATGATTCTTCCCCCTTCCATGATTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21128 OSBPL9::EPS15 ENSG00000117859.19::ENSG00000085832.18 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL9 ENSG00000117859.19 protein_coding + + chr1:51577179-51798427:+ chr1:51714079:+ chr1:52042851-52264099:+ chr1:52179751:+ EPS15 ENSG00000085832.18 protein_coding - + chr1:51354263-51519328:- chr1:51510054:+ chr1:51819935-51985000:- chr1:51975726:+ chr1:51727218,chr1:51727219 chr1:51506157,chr1:51506155 NA NA chr1:52192890,chr1:52192891 chr1:51971829,chr1:51971827 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PH_domain(100%)| PH(100%),PH_8(100%)| 2 1 6 361 1 ENST00000371714.5 unknown downstream upstream duplicates(2) GTTAGACTCAGA___GGAGCTGTGATTGGTATAGACGATGAGGACGACAGCACCTTCACAATAACTGTTGATCAGAAAACCTTCCATTTCCAGG___CCCGTGATGCTGATGAGCGAGAGAAGTGGATCCATGCCTTAGAAGAAACAATTCTTCGACATACTCTCCAGCTTCAA|GGATATAAGGATTACCAAGTTGTAAAGAATACTGAAAGGTTCATCAGGTTGTAAAGATTATTGAAAATAGCACATGACACcTAAGTGTGCTCA___ATAGGTACCATGGGAGAAAGATGGATTAAAAGATGTCCCTGCCCTGAATGAGCTCTCACTTGAG VRLRGAVIGIDDEDDSTFTITVDQKTFHFQARDADEREKWIHALEETILRHTLQLQ|gykdyqvvknterfirl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21132 CAMK2D::ENSG00000288781 ENSG00000145349.20::ENSG00000288781.2 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMK2D ENSG00000145349.20 protein_coding - - chr4:113418054-113761927:- chr4:113759320:- chr4:114339210-114683083:- chr4:114680476:- ENSG00000288781 ENSG00000288781.2 lncRNA - - chr4:114281113-114364978:- chr4:114315024:- chr4:115202269-115286134:- chr4:115236180:- chr4:113694084 chr4:114331794 NA NA chr4:114615240 chr4:115252950 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Protein_kinase_domain(14%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 1 1 1 127 1 ENST00000296402.9 unknown upstream downstream mismatches(1) GGGCGAGCTACTTTCGGACCAGGAAAGTAAcAaCGGCCCTGGGTGACAGCGCCGCGGGGCCAGaCCCGGGGcTAGCCGCGCGgCTGtTCGCTTCTGGgCCGTCGCGCTCCCAGCCAGGGCACAGCCCGGACCGAGGATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTATCAGCTTTTCGAGGAGCTTGGAAA___GGGGGCATTCTCAGTG...ATGTATGAAAATTCCTACTGGACAAGAATATGCTGCCAAAATTATCAACACCAAAAAGCTTTCTGCTAGGG|GTTGACTGTATAAAAAATAAAATACTTGGAATACATCTAGCCAAGGAGGTAAAAGATATCTACAAGGAGAACTACAAAACgCTGCTAAAATAAATCATAAGTGACATAAATAAAAG CMKIPTGQEYAAKIINTKKLSAR|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit delta CAMK CAMK2 Q13557 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21134 WWOX::CLEC3A ENSG00000186153.19::ENSG00000166509.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78115154:+ chr16:78133297-79246564:+ chr16:78149051:+ CLEC3A ENSG00000166509.12 protein_coding + + chr16:78022515-78066761:+ chr16:78051958:+ chr16:78056412-78100658:+ chr16:78085855:+ chr16:78135356,chr16:78135356,chr16:78135356 chr16:78046554,chr16:78046557,chr16:78046573 NA NA chr16:78169253,chr16:78169253,chr16:78169253 chr16:78080451,chr16:78080454,chr16:78080470 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%),short_chain_dehydrogenase(8%)| KR(0%),WW(100%),adh_short(0%),adh_short_C2(0%)| 0 1 2 72 3 ENST00000683929.1 ENST00000567430.2 downstream upstream duplicates(2),mismatches(1) AAaAAACTGATGAGAACGGACAAGTGTTTTTTGTTGA___CCATATAAATAAAAGAACCACCTACTTGGACCCAAGACTGGCGTTTACTGTGGATGATAATCCGACCAAGCCAACCACCCGGCAAAGATAC...GGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTGGCAAAGTGGTTGTGGTCACTGGAGCTAATTCAGGAATAG|GTATCTGCTGAATCCT...CCCaTGTGCgGcCCTGCCATGACAAACACTGGaAGGGAGCCTGCCATAGAGGAAAAGAGTAAGAATTGGCTGAGTTCACATATGGGCTCCATCAATAACTAGCGGCCAG___GTAACCCTAAGAAATAATTCCTACAAGGAGAAGGTCTCAAATGCCAATCAGCAGTCATTTGGT GSTTAMEILQGRDFTGKVVVVTGANSGI|gIC* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21136 PARM1::CCSER1 ENSG00000169116.11::ENSG00000184305.16 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PARM1 ENSG00000169116.11 protein_coding + + chr4:74933095-75050115:+ chr4:75033961:+ chr4:75858305-75975325:+ chr4:75959171:+ CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:91283809:+ chr4:91048545-92526446:+ chr4:92204960:+ chr4:75039774,chr4:75039774 chr4:91213801,chr4:91213798 NA NA chr4:75964984,chr4:75964984 chr4:92134952,chr4:92134949 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none PARM(90%)| PARM(89%)| 0 1 1 18 1 ENST00000513238.5 ENST00000649522.1 downstream upstream none GGTGTTTGGAGTTGCAGCCTACCTAAAAATCAG|GGCACAGCTTATGGAAGTGCTCCTGTACCTTCTCGCAGGCAATTAT___GCTACATATCGAAATCGAATTG...CAAACATTCAAGAGGAACTTATGAAACCCTCACTTCAGACGTTACACAGAACTTACGGGCCACCGTTGGGCAGAGCTCTCTGAAGCCAACAGCTAAGACAG VFGVAAYLKIr|aqlmevllyllagnyatyrnri NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21139 ST3GAL2::COG4 ENSG00000157350.13::ENSG00000103051.21 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE TRUE 1960 TRUE 3615 TRUE 1361 ST3GAL2 ENSG00000157350.13 protein_coding - - chr16:70375977-70439237:- chr16:70438949:- chr16:70409880-70473140:- chr16:70472852:- COG4 ENSG00000103051.21 protein_coding - - chr16:70480568-70523560:- chr16:70519731:- chr16:70514471-70557463:- chr16:70553634:- chr16:70438515 chr16:70521770 NA NA chr16:70472418 chr16:70555673 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |COG4_transport_protein(100%) |COG4(100%) 0 34 0 68 420 ENST00000342907.3 ENST00000674443.1 upstream downstream duplicates(3),mismatches(2) CGGCGGCGGCGGCCGGAGCGGCGAGCATGGCCCGCGCGGCGCCGGGCGCTGACTGAG|AAAGTGGTGGAGAGAGAGCTGGATGCTCTTTTGGAACAGCAAAACACCATTGAAAGTAAGATGGTCACTCTCCACCGAATGGG___TCCTAATCTGCAGCTGATTGAGGGAGATGCAAAGCAGCTGGCTGGAATGATCACCTTTACCTGCAACCTGGCTGAGAATGTGTCCAGCAAAGTTCGTCAGCTTGACCTGGCCAAG___AACCGCCTCTATCAGGCCATTCAGAGAGCTGATGACATCTTGGACCTGAAGTTCTGCA...TATGAGCAGGCTGCAGCACATAtTCATCGCTACTTGTGCCTGGACAAGTCGGTCATTGAGCTCAGCCGACAGGGCAAAGAGG___GGAGCATGATTGATGCCAACCTGAAATTGCTGCAGGAAGCTGAGCAACGTCTCAAAGCCATTGTGGCAGAGAAGTTTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Esophageal carcinoma OVARY,OESOPHAGUS no_match 70422270,70472852 FALSE,TRUE 70534994,70517872 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21140 ST3GAL2::COG4 ENSG00000157350.13::ENSG00000103051.21 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3615 TRUE 1361 ST3GAL2 ENSG00000157350.13 protein_coding - - chr16:70375977-70439237:- chr16:70438949:- chr16:70409880-70473140:- chr16:70472852:- COG4 ENSG00000103051.21 protein_coding - - chr16:70480568-70523560:- chr16:70517740:- chr16:70514471-70557463:- chr16:70551643:- chr16:70438515 chr16:70521770 NA NA chr16:70472418 chr16:70555673 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |COG4_transport_protein(100%) |COG4(100%) 0 5 0 68 513 ENST00000342907.3 ENST00000674443.1 upstream downstream duplicates(1) GGCGGCCGGAGCGGCGAGCATGGCCCGCGCGGCGCCGGGCGCTGACTGAG|TCCTAATCTGCAGCTGATTGAGGGAGATGCAAAGCAGCTGGCTGGAATGATCACCTTTACCTGCAACCTGGCTGAGAATGTGTCCAGCAAAGTTCGTCAGCTTGACCTGGCCAAG___AACCGCCTCTATCAGGCCATTCAGAGAGCTGATGACATCTTGGACCTGAAGTTCTGCATGGATGGAGTTCAGACTGCTTTGAGGAGTGAAGATTATGAGCAGGCTGCAGCACATAtTCATCGCTACTTGTGCCTGGACAAGTCGGTCATTGAGCTCAGCCGACAGGGCAAAGAGGGTCAGCATCCGAAACT___GGAGCATGATTGATGCCAACCTGAAATTGCTGCAGGAAGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Esophageal carcinoma OVARY,OESOPHAGUS no_match 70422270,70472852 FALSE,TRUE 70534994,70517872 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21144 DPYD::MIR137HG ENSG00000188641.14::ENSG00000225206.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3616 TRUE 1362 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:97995000:- chr1:98399030-98515427:- chr1:98460556:- chr1:97901033,chr1:97901035 chr1:98017779,chr1:98017778 NA NA chr1:98366589,chr1:98366591 chr1:98483335,chr1:98483334 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 0 12 1 278 17 ENST00000370192.8 ENST00000424528.2 upstream downstream mismatches(1) CTGCTGTCACTTGGCTCTCTGGCTGGAGCTTGAGGACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|GCATCCAAAGCCTCTGGGATGTGTTCTGACTGTAAAAACTCTGATGTTGTGAAAAAAGCTTACGCTTTGCCTCCACTCAAACCAG___ATGGTGTTTCGCTCTTATTGCCCAGGCTGGAGTGCAATGACGTGATCTTGACTCACCACAGCCTCTGCATCCAGGATTCAAGCTATTCCCCTGCCTCAGCCTCCCAAAATGCTGGGATTATAGGCGTGAGCCACCACGCCTGGCCAGCATTCCCAATTTTTAAAAATGAATGATTGGCACAAATCTTAGAAAGCCATTTTCTGTAGATTTGAAAGCAATGCTATTTACATTGTTACTACTTTCTTGTTAAATCTTGCATGTCTGCAGTATGTGTTGTAATAGAAACCTAAGATTATGA MAPVLSKDSADIE|askasgmcsdcknsdvvkkayalpplkpdgvslllprlecndvilthhslciqdssyspasasqnagiigvshhawpafpifkne* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21145 DPYD::MIR137HG ENSG00000188641.14::ENSG00000225206.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3616 TRUE 1362 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:97989569:- chr1:98399030-98515427:- chr1:98455125:- chr1:97901033,chr1:97901035 chr1:98017779,chr1:98017778 NA NA chr1:98366589,chr1:98366591 chr1:98483335,chr1:98483334 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 2 4 278 28 ENST00000370192.8 ENST00000424528.2 upstream downstream duplicates(4) CTCGCGCTCCGGCTGCTGTCACTTGGCTCTCTGGCTGGAGCTTGAGGACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|ATGGTGTTTCGCTCTTATTGCCCAGGCTGGAGTGCAATGACGTGATCTTGACTCACCACAGCCTCTGCATCCAGGATTCAAGCTATTCCCCTGCCTCAGCCTCCCAAAATGCTGGGATTATAGGCGTGAG MAPVLSKDSADIE|mvfrsycpgwsamt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21146 DPYD::MIR137HG ENSG00000188641.14::ENSG00000225206.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3616 TRUE 1362 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:97975100:- chr1:98399030-98515427:- chr1:98440656:- chr1:97901033,chr1:97901035 chr1:98017779,chr1:98017778 NA NA chr1:98366589,chr1:98366591 chr1:98483335,chr1:98483334 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 2 2 0 278 2 ENST00000370192.8 ENST00000602672.2 upstream downstream none TGGCTCTCTGGCTGGAGCTTGAGGACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|AAGCATATGAGAAAAATTTGCTGGGTATCTACTCACTTCAATTCAAACATTTGAAGAAATTATGAAA...AAAAAATCAAGAACAATAAAACATTAGAGAAGAAAATAGAAAAATCCTGTGAAAAAGGTCCAAATGCAGGCTGCAAAG...ATCTTCAGACAGTGTAGCGAACCAACTGTGCCAGACTTAAACTGACGACCCTGAGGTGAATCGTTCTATTGCCACAACATTTCTGATCTTCAAGGCTCTC MAPVLSKDSADIE|khmrkicwvsthfnsni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21147 DPYD::MIR137HG ENSG00000188641.14::ENSG00000225206.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3616 TRUE 1362 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:97941740:- chr1:98399030-98515427:- chr1:98407296:- chr1:97891702,chr1:97901033,chr1:97891704,chr1:97901035 chr1:97954956,chr1:98017779,chr1:97954955,chr1:98017778 NA NA chr1:98357258,chr1:98366589,chr1:98357260,chr1:98366591 chr1:98420512,chr1:98483335,chr1:98420511,chr1:98483334 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 0 2 1 278 13 ENST00000370192.8 ENST00000602672.2 upstream downstream none CGCGCTCCGGCTGCTGTCACTTGGCTCTCTGGCTGGAGCTTGAGGACGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|CCAAAAGTGGAAACAATTCAAATGTCCAACAACTGACGAAAAGATGAAGTGTGGTATATCCATATAATGGAATAATATGC...CATAAAGTGGAATGATTGACACATGTTTACAACATGGATGAACCTTGACAACGCTGTGTTAAGTTAAAGAAGCCAGACACAAAAG___GATTGTCAACACTGTG...ATAACAGGAATAACTGTTTTATGACAAATGGACCTGAACCCTATGAAATGAATTTGCAAGCACTGGCACAGTTAACATATGCTACAAACAACCATCTTCAG...CAACTGTGCCAGACTTAAACTGACGACCCTGAGGTGAATCGTTCTATTGCCACAACATTTCTGATCTTCAAGGCTCTCCATGCTCCTAAACTCTTTTCTTT MAPVLSKDSADIE|pkvetiqmsnn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21148 DPYD::MIR137HG ENSG00000188641.14::ENSG00000225206.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3616 TRUE 1362 DPYD ENSG00000188641.14 protein_coding - - chr1:97077743-97995000:- chr1:97920884:- chr1:97543299-98460556:- chr1:98386440:- MIR137HG ENSG00000225206.12 lncRNA - - chr1:97933474-98049871:- chr1:97979315:- chr1:98399030-98515427:- chr1:98444871:- chr1:97901033,chr1:97901035 chr1:98017779,chr1:98017778 NA NA chr1:98366589,chr1:98366591 chr1:98483335,chr1:98483334 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 1 0 278 1 ENST00000370192.8 ENST00000602672.2 upstream downstream none CGCAAGGAGGGTTTGTCACTGGCAGACTCGAGACTGTAGGCACTGCCATGGCCCCTGTGCTCAGTAAGGACTCGGCGGACATCGAG|CCTCTTGCAGCTTTT...TCATCACAG___CCAAAAGTGGAAACAATTCAAATGTCCAACAACTGACGAAAAGATGAAGTGTGGTATATCCATATAATGGAATAATATGCAGACATAAAGTG MAPVLSKDSADIE|plaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21151 FBXO8::LINC02268 ENSG00000164117.14::ENSG00000248174.8 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXO8 ENSG00000164117.14 protein_coding - - chr4:174236658-174283667:- chr4:174241100:- chr4:175157809-175204818:- chr4:175162251:- LINC02268 ENSG00000248174.8 lncRNA - - chr4:174061732-174220398:- chr4:174120086:- chr4:174982883-175141549:- chr4:175041237:- chr4:174240081,chr4:174240102 chr4:174184117,chr4:174184126 NA NA chr4:175161232,chr4:175161253 chr4:175105268,chr4:175105277 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none F-box-like(100%),Sec7_domain(31%)| F-box(100%),F-box-like(100%),Sec7(83%)| 2 1 5 41 14 ENST00000393674.7 ENST00000515444.5 upstream downstream mismappers(1),mismatches(1) CTTTACCATCTTGTCCTACCTGAATGCAACTGACCTTTGCTTGGCTTCATGTGTTTGGCAGGACCTTGCGAATGATGAACTTCTCTGGCAAGG___GTTGTGCAAATCCACTTGGGGTCACTGTTCCATATACAATAAGAACCCACCTTTAGGATTTTCTTTTAGAAAATTGTATATGCAGCTGGATGAAGGCAGCCTCACCTTTAATGCCAACCCAGATGAG___GGAGTGAACTACTTTATGTCCAAGGGTATCCTGGATGATTCGCCAAAGGAAATAGCAAAGTTTATCTTCTGTACAAGAACACTAAATTGGAAAAAACTGAGAATCTATCTTGATGAAAG|AAAGCAATGAAGAGAAAAGCTGAAGTCAGTGATTAGGAGTGTCTGTGTAAGTAAAAGCAACAGGCAATTACTGAGTGTGGTGTGAGAGGCACGGAAAGATTGGGAATTCAGCAAGAAGAGGAATTGAAGTCAAACCTCACCTACTTCCCAGAGTCTTCTGGATTTTCTGTTAGAAGCTTCAGTATCTGAG___GGGCACACCCAGCTCCAAG FTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDEr|kq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21155 PHF3::EYS ENSG00000118482.12::ENSG00000188107.15 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF3 ENSG00000118482.12 protein_coding + + chr6:63635802-63779336:+ chr6:63728875:+ chr6:64345707-64489229:+ chr6:64438768:+ EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:63864358:- chr6:64429876-66417119:- chr6:64574251:- chr6:63751986,chr6:63751986,chr6:63744351,chr6:63744352,chr6:63744365,chr6:63744393,chr6:63744398,chr6:63744378,chr6:63744382,chr6:63744407 chr6:64577539,chr6:64577555,chr6:64032295,chr6:64032295,chr6:64032295,chr6:64032295,chr6:64032295,chr6:64032295,chr6:64032295,chr6:64032295 NA NA chr6:64461879,chr6:64461879,chr6:64454244,chr6:64454245,chr6:64454258,chr6:64454286,chr6:64454291,chr6:64454271,chr6:64454275,chr6:64454300 chr6:65287432,chr6:65287448,chr6:64742188,chr6:64742188,chr6:64742188,chr6:64742188,chr6:64742188,chr6:64742188,chr6:64742188,chr6:64742188 NA NA sense sense unknown intron CDS/splice-site inversion medium Mitelman PHD-finger(100%),SPOC_domain(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%)|EGF-like_domain(19%),Human_growth_factor-like_EGF(25%),Laminin_G_domain(58%) Laminin_G_1(28%),Laminin_G_2(100%),PHD(100%),SPOC(100%),TFIIS_M(100%),hEGF(67%)|EGF(2%),Laminin_G_1(29%),Laminin_G_2(19%),hEGF(0%) 2 0 1 1 36 unknown ENST00000503581.6 downstream downstream none TGAGGGAAGGAGAGAAAGAGAACTCTGGGAGTTATCTGCTGGATTAAAAAACATTGCTCATAAATACAATAAACTGCTTATGTAATTTTGTAATTTCAGGA...TAGGGGTTCCTTGGACCACATTTTCATAAAATCTGGTTAAAATTTTAAGAACACAAGGGTGATTTAAAAT___TATATCATATAGTTGGAATCATACAGTTTGAACACAAGTTTTCAGCTCCTTTGGACAAATACCAAGGAACACAATTGCTTGATCATATG|TGATAATGAAAATCTGTTTTGTGAGTGTCCAAGGCTGTATTCAGGCAAGCTGTGCCAGTTTGCAAGTTGTGAAAACAACCCATGTGGAAATGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain,Breast no_match TRUE Breast invasive carcinoma BREAST no_match 64356700 FALSE 64791895 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21166 UFL1::FHL5 ENSG00000014123.10::ENSG00000112214.11 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3619 TRUE 1363 UFL1 ENSG00000014123.10 protein_coding + + chr6:96521595-96555276:+ chr6:96543016:+ chr6:96969471-97003152:+ chr6:96990892:+ FHL5 ENSG00000112214.11 protein_coding + + chr6:96562548-96618626:+ chr6:96586849:+ chr6:97010424-97066502:+ chr6:97034725:+ chr6:96545902,chr6:96545899 chr6:96565154,chr6:96565148 NA NA chr6:96993778,chr6:96993775 chr6:97013030,chr6:97013024 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through low none E3_UFM1-protein_ligase_1(100%)|LIM_domain(100%) E3_UFM1_ligase(100%)|LIM(100%) 0 1 7 117 0 ENST00000369278.5 unknown downstream upstream duplicates(1),mismatches(1) CTCCACTTTAGAAAtCGTTtGTACAAtTAAAAAGGtTAAAAAAGATGAGCGAAGAAGGAAAGCAACAG___AGGGCAGTGGAAGCATGAGAGGAGGAGGTGGGGGCAATGCCAGAGAGTACAAAATTAAAAAAGTCAAGAAGAAAGGAAGAAAAGATGATGATAGTGATGATGAATCTCAATCATCCCACACTG|ATCAGCTGCA...TTGAAGAACTGTGATAAGAGATGAAACACGGCTTTGCCAGTCCGATCCTGAAGACAAAGCACAATCAAAGGAATGGCCTCCAAGAGACGGAAGTGGTCCAG STLEiVcTiKKvKKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHT|dql NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21167 UFL1::FHL5 ENSG00000014123.10::ENSG00000112214.11 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3619 TRUE 1363 UFL1 ENSG00000014123.10 protein_coding + + chr6:96521595-96555276:+ chr6:96543016:+ chr6:96969471-97003152:+ chr6:96990892:+ FHL5 ENSG00000112214.11 protein_coding + + chr6:96562548-96618626:+ chr6:96603602:+ chr6:97010424-97066502:+ chr6:97051478:+ chr6:96545902,chr6:96545899 chr6:96565154,chr6:96565148 NA NA chr6:96993778,chr6:96993775 chr6:97013030,chr6:97013024 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none E3_UFM1-protein_ligase_1(100%)|LIM_domain(100%) E3_UFM1_ligase(100%)|LIM(100%) 1 0 4 117 6 ENST00000369278.5 ENST00000450218.6 downstream upstream duplicates(1),mismatches(1) GAAGATCTGAAACAAATCTCCACTTTAGAAAGCGTTAGTACAAGTAAAAAGGATAAAAAAGATGAGCGAAGAAGGAAAGCAACAG___AGGGCAGTGGAAGCATGAGAGGAGGAGGTGGGGGCAATGCCAGAGAGTACAAAATTAAAAAAGTCAAGAAGAAAGGAAGAAAAGATGATGATAGTGATGATGAATCTCAATCATCCCACACTG|GATCAAACCAAAATGACAACTGCTCACTTTTACTGTCAATACTGCACAGCATCACTTCTTGGGAAGAAATATGTACTAAAGGATGACAGTCCATACTGTGTTACATGTTATGATCGTGTATTTTCTtACTATTGCGAGGAATGCAAAAAACCAATTGAATCTGATTCTAAG___GATCTTTGTTACAAAGACCGGCAC EDLKQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSSHT|gsnqndncslllsilhsitsweeictkg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21169 INTU::SLC25A31 ENSG00000164066.13::ENSG00000151475.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3620 TRUE 1364 INTU ENSG00000164066.13 protein_coding + + chr4:127623271-127726737:+ chr4:127644056:+ chr4:128544426-128647892:+ chr4:128565211:+ SLC25A31 ENSG00000151475.6 protein_coding + + chr4:127730400-127774292:+ chr4:127768752:+ chr4:128651555-128695447:+ chr4:128689907:+ chr4:127646735 chr4:127745721 NA NA chr4:128567890 chr4:128666876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Mitochondrial_carrier_protein(34%) |Mito_carr(20%) 0 3 4 33 6 ENST00000335251.11 ENST00000281154.6 downstream upstream none CTAAAGCATCAGTCCAATCAGAAGACAGGAGTCATTGTCCAACAGCGgTACAAAGATGTGAATGTTTATGTAAACCCCAAAAAGCTAACTGTTATCAAAGCCcAAGAGCAGCTCAAGCTTCTGGAAGTGCTGGTTGGAATTATTCATCAGACCAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAGAGAGGCTTGTGGTTCATGGCCTGCTGCCAGGGGGATCTGCTATGAAGAGCGGTCAGGTACTCATTG|GGTTTATTACCAAAGCCAAAGAAAACTCCgTTTCTTGTCTCCTTTTTCATTGCTCAAGTTGTGACTACATGCTCTGGAATACTTTCTTATCCCTTTGACACAGTTAGAAGACGTATGATGATGCAG___AGTGGTGAGGCTAAACGGCA...CTCCAATGTTCTTCGCGGTACAGGGGGTGCTTTGGTGTTGGTATTATATGATAAAATTAAAGAATTCTTTCATATTGATATTGGTGGTAGGTAATCGGGAGAGTAAATTAAGAAATACATGGATTTAtCTTGTTAAACATACAAATTACATAGCTGCCATTTGCATACATTTTG...ATAAAGCATACATTTTTTCAAGAATTTAAATACTAAAAATCAGATAAATGTGGATTTTCCTCCCACTTAGACTCAAACACATTTTAGTGTGATATTTCATT LKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAqEQLKLLEVLVGIIHQTKWSWRRTGKQGDGERLVVHGLLPGGSAMKSGQVLI|gfitkakensvscllfhcsscdymlwntflsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21170 INTU::SLC25A31 ENSG00000164066.13::ENSG00000151475.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3620 TRUE 1364 INTU ENSG00000164066.13 protein_coding + + chr4:127623271-127726737:+ chr4:127644056:+ chr4:128544426-128647892:+ chr4:128565211:+ SLC25A31 ENSG00000151475.6 protein_coding + + chr4:127730400-127774292:+ chr4:127767066:+ chr4:128651555-128695447:+ chr4:128688221:+ chr4:127646735 chr4:127745721 NA NA chr4:128567890 chr4:128666876 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Mitochondrial_carrier_protein(52%) |Mito_carr(27%) 0 1 4 33 3 ENST00000335251.11 ENST00000281154.6 downstream upstream low_entropy(1) CTAAAGCATCAGTCCAATCAGAAGACAGGAGTCATTGTCCAACAGCGgTACAAAGATGTGAATGTTTATGTAAACCCCAAAAAGCTAACTGTTATCAAAGCCcAAGAGCAGCTCAAGCTTCTGGAAGTGCTGGTTGGAATTATTCATCAGACCAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAGAGAGGCTTGTGGTTCATGGCCTGCTGCCAGGGGGATCTGCTATGAAGAGCGGTCAGGTACTCATTG|GTCCTGAGGAGCGACAATTCAAGGGTTTAGGTGACTGTATTATGAAAATAGCAAAATCAGATGGAATTGCTGGTTTATACCAAGGGTTTG...TTCTTGTCTCCTTTTTCATTGCTCAAGTTGTGACTACATGCTCTGGAATACTTTCTTATCCCTTTGACACAGTTAGAAGACGTATGATGATGCAG___AGTGG LKHQSNQKTGVIVQQRYKDVNVYVNPKKLTVIKAqEQLKLLEVLVGIIHQTKWSWRRTGKQGDGERLVVHGLLPGGSAMKSGQVLI|gPEERQFKGLGDCIMKIAKSDGIAGLYQGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21171 INTU::SLC25A31 ENSG00000164066.13::ENSG00000151475.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 3620 TRUE 1364 INTU ENSG00000164066.13 protein_coding + + chr4:127623271-127726737:+ chr4:127644056:+ chr4:128544426-128647892:+ chr4:128565211:+ SLC25A31 ENSG00000151475.6 protein_coding + + chr4:127730400-127774292:+ chr4:127773386:+ chr4:128651555-128695447:+ chr4:128694541:+ chr4:127646735 chr4:127745721 NA NA chr4:128567890 chr4:128666876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Mitochondrial_carrier_protein(19%) |Mito_carr(0%) 0 1 2 33 9 ENST00000335251.11 ENST00000281154.6 downstream upstream none CTAAAGCATCAGTCCAATCAGAAGACAGGAGTCATTGTCCAACAGCGgTACAAAGATGTGAATGTTTATGTAAACCCCAAAAAGCTAACTGTTATCAAAGC...GTTGGAATTATTCATCAGACCAAGTGGAGCTGGAGAAGAACCGGAAAGCAGGGTGATGGAGAGAGGCTTGTGGTTCATGGCCTGCTGCCAGGGGGATCTGC...CAGGTACTCATTG|AGTGGTGAGGCTAAACGGCAATATAAAGGAACCTTAGACTGCTTTGTGAAGATATACCAACATGAAGGAATCAGTTCCTTTTTTCGTGGCGCCTTCTCCAATGTTCTTCGCGGTACAGGGGGTGCTTTGGTG...TAAAGAATTCTTTCATATTGATATTGGTGGTAGGTAATCGGGAGAGTAAATTAAGAAATACATGGATTTAACTTGTTAAACATACAAATTACATAGCTGCC...TTTTTCAAGAATTTAAATACTAAAAATCAGATAAATGTGGATTTTCCTCCCACTTAGACTCAAACACATTTTAGTGTGATATTTCATTTATTATAGGTAGT QVLI|ew* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21202 RPS15::DAZAP1 ENSG00000115268.10::ENSG00000071626.17 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RPS15 ENSG00000115268.10 protein_coding + + chr19:1438358-1440495:+ chr19:1438892:+ chr19:1438357-1440494:+ chr19:1438891:+ DAZAP1 ENSG00000071626.17 protein_coding + + chr19:1407569-1435687:+ chr19:1422348:+ chr19:1407568-1435686:+ chr19:1422347:+ chr19:1439244,chr19:1439244,chr19:1439232,chr19:1439239 chr19:1422114,chr19:1422118,chr19:1422099,chr19:1422109 NA NA chr19:1439243,chr19:1439243,chr19:1439231,chr19:1439238 chr19:1422113,chr19:1422117,chr19:1422098,chr19:1422108 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(35%) |RRM_1(80%),RRM_7(75%) 160 271 72 17463 1938 ENST00000592588.7 ENST00000589484.5 downstream upstream duplicates(97),inconsistently_clipped(15),low_entropy(3),mismatches(9) CCGGCAAGATG___GCAGAAGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTCCTA|GTCACGGAGGTAGTCATGATCTATGACGCCGAGAAGCAGAGGCCCCGAG___GTGGAAGTTAAACGAGCTGAGCCTCGGGACAGCAAGAGCCAAGCGCCGGGACAGCCAGGTGCCAGCCAGTGGGGGAGCCGGGTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21204 EFNA4::RUSC1 ENSG00000243364.8::ENSG00000160753.17 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE TRUE 1961 FALSE NA FALSE NA EFNA4 ENSG00000243364.8 protein_coding + + chr1:155063737-155069553:+ chr1:155067440:+ chr1:155036213-155042029:+ chr1:155039916:+ RUSC1 ENSG00000160753.17 protein_coding + + chr1:155320894-155331114:+ chr1:155324845:+ chr1:155290685-155300905:+ chr1:155294636:+ chr1:155068263,chr1:155068573,chr1:155068261 chr1:155324485,chr1:155324485,chr1:155324479 NA NA chr1:155040739,chr1:155041049,chr1:155040737 chr1:155294276,chr1:155294276,chr1:155294270 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Ephrin(100%)|RUN_domain(100%),Variant_SH3_domain(100%) |RUN(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 89 103 68 464 358 ENST00000368409.8 ENST00000696599.1 downstream upstream duplicates(7),low_entropy(1),mismappers(2),mismatches(16) TGTTCAATTCTCAGAGAAGATTCAGCGCTTCACACCCTTCTCCCTCGGCTTTGAGTTCTTACCTGGAGAGACTTACTACTACATCT___CGGTGCCCACTCCAGAGAGTTCTGGCCAGTGCTTGAGGCTCCAGGTGTCTGTCTGCTGCAAGGAGAGGA|TCCGTAGTTCGTGGTCCTTCGCCGGTGTCCCCGGAGCCCAGCGGCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAG___GTCTTCTGATAGCCGTCAGCGTCTCCGTTGATAAAATCATCTCGCATTTCGGGGCCGCCCGGAACTTGGTGCAGAAG___GCCCAGTTGGG VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER|iRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21206 ZFYVE28::POLN ENSG00000159733.14::ENSG00000130997.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE TRUE 1963 TRUE 3623 TRUE 1365 ZFYVE28 ENSG00000159733.14 protein_coding - - chr4:2269582-2418651:- chr4:2353933:- chr4:2271309-2420378:- chr4:2355660:- POLN ENSG00000130997.16 protein_coding - - chr4:2071918-2242121:- chr4:2095933:- chr4:2073645-2243848:- chr4:2097660:- chr4:2343952,chr4:2343957 chr4:2108474,chr4:2108476 NA NA chr4:2345679,chr4:2345684 chr4:2110201,chr4:2110203 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |DNA_polymerase_family_A(47%) |DNA_pol_A(23%) 61 39 22 231 162 ENST00000290974.7 ENST00000511885.6 upstream downstream duplicates(5),low_entropy(1),mismappers(1),mismatches(7) CGAAAGTGGCTCTACAAACCCAAG___AGGTCGGATCCGCAGCTGCTTGCCCGGTTCTACTATGCCGACGAGGAGCTGAACCAGGTGGCCGCGGAGCTGGACAGCCTGGATGGGCGGAAGGACCCCCAGCGGTGCACGCTGCTGGTCAGCCAGTTCCGCTCCTGTCAG|GAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAACCAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAG___GGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCTATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAG RKWLYKPKRSDPQLLARFYYADEELNQVAAELDSLDGRKDPQRCTLLVSQFRSCQ|egcargtgdtrrqranqeggvrgglwsregaagclpwssysgscpvfgeffaevq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21207 ZFYVE28::POLN ENSG00000159733.14::ENSG00000130997.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3623 TRUE 1365 ZFYVE28 ENSG00000159733.14 protein_coding - - chr4:2269582-2418651:- chr4:2418285:- chr4:2271309-2420378:- chr4:2420012:- POLN ENSG00000130997.16 protein_coding - - chr4:2071918-2242121:- chr4:2095933:- chr4:2073645-2243848:- chr4:2097660:- chr4:2343952,chr4:2343957 chr4:2108474,chr4:2108476 NA NA chr4:2345679,chr4:2345684 chr4:2110201,chr4:2110203 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |DNA_polymerase_family_A(47%) |DNA_pol_A(23%) 0 5 2 71 162 ENST00000290974.7 ENST00000511885.6 upstream downstream mismatches(1) CGCAGCGCTGCGGAGGGCGAGGGCCGCCCGGAGTCCGGCCAGGGCCGGCGCGGCGATGATGAACAGGTTCCGAAAGTGGCTCTACAAACCCAAG|GAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAACCAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAG___GGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCTATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAGAAAATCAAGGACTTCGCCCG...GTGTGGTGTCCATCATGGGCAGAAGGAGACCCCTGCCAAGGATTCACGCTCATGACCAGCAACTCCGGGCACAAGCAGAGCGACAGGCAGTGAACTTCGTG MMNRFRKWLYKPK|egcargtgdtrrqranqeggvrgglwsregaagclpwssysgscpvfgeffaevqenqglr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21208 ZFYVE28::ENSG00000290263 ENSG00000159733.14::ENSG00000290263.1 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3624 TRUE 1366 ZFYVE28 ENSG00000159733.14 protein_coding - - chr4:2269582-2418651:- chr4:2353933:- chr4:2271309-2420378:- chr4:2355660:- ENSG00000290263 ENSG00000290263.1 protein_coding - - chr4:2078998-2242276:- chr4:2095933:- chr4:2080725-2244003:- chr4:2097660:- chr4:2343952,chr4:2343957 chr4:2108474,chr4:2108476 NA NA chr4:2345679,chr4:2345684 chr4:2110201,chr4:2110203 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through high none none |DNA_pol_A(23%) 61 38 22 231 162 ENST00000290974.7 ENST00000672739.1 upstream downstream duplicates(5),low_entropy(1),mismappers(1),mismatches(6) CGAAAGTGGCTCTACAAACCCAAG___AGGTCGGATCCGCAGCTGCTTGCCCGGTTCTACTATGCCGACGAGGAGCTGAACCAGGTGGCCGCGGAGCTGGACAGCCTGGATGGGCGGAAGGACCCCCAGCGGTGCACGCTGCTGGTCAGCCAGTTCCGCTCCTGTCAG|GAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAACCAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAG___GGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCTATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAG RKWLYKPKRSDPQLLARFYYADEELNQVAAELDSLDGRKDPQRCTLLVSQFRSCQ|egcargtgdtrrqranqeggvrgglwsregaagclpwssysgscpvfgeffaevq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21209 ZFYVE28::ENSG00000290263 ENSG00000159733.14::ENSG00000290263.1 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3624 TRUE 1366 ZFYVE28 ENSG00000159733.14 protein_coding - - chr4:2269582-2418651:- chr4:2418285:- chr4:2271309-2420378:- chr4:2420012:- ENSG00000290263 ENSG00000290263.1 protein_coding - - chr4:2078998-2242276:- chr4:2095933:- chr4:2080725-2244003:- chr4:2097660:- chr4:2343952,chr4:2343957 chr4:2108474,chr4:2108476 NA NA chr4:2345679,chr4:2345684 chr4:2110201,chr4:2110203 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none none |DNA_pol_A(23%) 0 5 2 71 162 ENST00000290974.7 ENST00000672739.1 upstream downstream mismatches(1) CGCAGCGCTGCGGAGGGCGAGGGCCGCCCGGAGTCCGGCCAGGGCCGGCGCGGCGATGATGAACAGGTTCCGAAAGTGGCTCTACAAACCCAAG|GAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAACCAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAG___GGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCTATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAGAAAATCAAGGACTTCGCCCG...GTGTGGTGTCCATCATGGGCAGAAGGAGACCCCTGCCAAGGATTCACGCTCATGACCAGCAACTCCGGGCACAAGCAGAGCGACAGGCAGTGAACTTCGTG MMNRFRKWLYKPK|egcargtgdtrrqranqeggvrgglwsregaagclpwssysgscpvfgeffaevqenqglr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21210 METTL16::SMG6 ENSG00000127804.13::ENSG00000070366.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE TRUE 1964 FALSE NA FALSE NA METTL16 ENSG00000127804.13 protein_coding - - chr17:2405562-2511891:- chr17:2511759:- chr17:2308856-2415185:- chr17:2415053:- SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2283735:- chr17:1963133-2207079:- chr17:2187029:- chr17:2508844,chr17:2508852 chr17:2287227,chr17:2287232 NA NA chr17:2412138,chr17:2412146 chr17:2190521,chr17:2190526 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none |Est1_DNA/RNA_binding_domain(91%),PIN_domain(100%) |EST1_DNA_bind(92%),PIN_4(100%) 10 55 14 149 131 ENST00000263092.11 ENST00000263073.11 upstream downstream duplicates(6),mismappers(2),mismatches(4) GCTGGGAGCGTATCATCTGCGTTTCTAGGAGCTTCGCTATGCGGCTGCTTTAAGATTCTAGGGTTGTACAGGCCCACGCCAGACACGACGTCTGGCAGGAACCTCGGCCTCAGAG|AGGAGGAAGCTTGACGCTGTCTATTACTATATGCGCAGTTTAGCTGCCAGCAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAGCTTGTTTGAAGAGACCAAGCGGAAG___GCAGAACAGATGGAAAAGAAGCAACATGAGGAATTTGACCTGAGCCCTGACCAGTGGCGGAAAGGAAAGAAGTCTACTTTCCGGCATGTTGGAGATGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21212 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3625 TRUE 1367 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80278519:- chr14:80663869-80854100:- chr14:80744862:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Iodothyronine_deiodinase(100%) |T4_deiodinase(100%) 20 11 23 546 67 ENST00000555265.6 ENST00000554188.5 upstream downstream duplicates(2),mismappers(1),mismatches(7) GAAGATTTCAAAGACTTCAGA___GATTCCTGCAGTTCATCTGAGAGAACTGATGGAAGATATTCCAAATACAGGGTTCGCAGAAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTGACAGAACCTTTCTGGAAGGTTCCCACACTCGTGGGTTAGATCACTCATCCTCTTGGCAGGATCACAGTCGCTTCCTGTCTAGTCCAAGATTTTCATACGTGAACT|GACTTTGGACTTGGGCCGGAACTACACATCAGCTCTCCTGGGCCTCTAGCTTGCCAACTACGGACACTGTGACTTTTCAGCCATCACAATTGT___...GTTCAATTTGAT EDFKDFRDSCSSSERTDGRYSKYRVRRNSLQHHQDDTKYRTKSFKGDRTFLEGSHTRGLDHSSSWQDHSRFLSSPRFSYVN|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21213 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3625 TRUE 1367 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80313579:- chr14:80663869-80854100:- chr14:80779922:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none |Iodothyronine_deiodinase(100%) |T4_deiodinase(100%) 3 2 27 546 18 ENST00000555265.6 ENST00000556384.1 upstream downstream duplicates(1),mismatches(5) GTTCATCTGAGAGAACTGATGGAAGATATTCCAAATACAGGGTTCGCAGAAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTGACAGAACCTTTCTGGAAGGTTCCCACACTCGTGGGTTAGATCACTCATCCTCTTGGCAGGATCACAGTCGCTTCCTGTCTAGTCCAAGATTTTCATACGTGAACT|GTGTGGCATGGGGGAAAGGAATATGGCTAATAATCACTATGCAAAATAAGAAATGCATTTAAAAGTTGATACAGTATGGAGGAAAGGTGTGACCCTTTCTGCAGATGTGAG___...ATAGTCACATTT?TACCTTGGAAGTCTCCCTTTGGGATCAGCATGTAGGATG...___TATTTAGGGAGAAAGAAGAGATTGA SSERTDGRYSKYRVRRNSLQHHQDDTKYRTKSFKGDRTFLEGSHTRGLDHSSSWQDHSRFLSSPRFSYVN|cvawgkgiwliitmqnkkci* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21214 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3625 TRUE 1367 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80216737:- chr14:80663869-80854100:- chr14:80683080:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |Iodothyronine_deiodinase(100%) |T4_deiodinase(100%) 0 1 13 546 231 ENST00000555265.6 ENST00000553594.1 upstream downstream duplicates(1),mismatches(3) AAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTGACAGAACCTTTCTGGAAGGTTCCCACACTCGTGGGTTAGATCACTCATCCTCTTGGCAGGATCACAGTCGCTTCCTGTCTAGTCCAAGATTTTCATACGTGAACT|TATTTAGGGAGAAAGAAGAGATTGAGTCACAGTTTCAGAAAAGAAAGG___TAGGTAGCCTGGAAAAAAAAGAGAAGCAACAGTTCCTGAGGGAAGAATGCATTAACAACTCGG NSLQHHQDDTKYRTKSFKGDRTFLEGSHTRGLDHSSSWQDHSRFLSSPRFSYVN|lfrekeeiesqfqkrkvgslekkekqqflreecinns NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21215 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3625 TRUE 1367 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80211525:- chr14:80663869-80854100:- chr14:80677868:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |Iodothyronine_deiodinase(100%) |T4_deiodinase(100%) 4 2 7 546 254 ENST00000555265.6 ENST00000557010.5 upstream downstream mismatches(2) GAAGATTTCAAAGACTTCAGA___GATTCCTGCAGTTCATCTGAGAGAACTGATGGAAGATATTCCAAATACAGGGTTCGCAGAAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTGACAGAACCTTTCTGGAAGGTTCCCACACTCGTGGGTTAGATCACTCATCCTCTTGGCAGGATCACAGTCGCTTCCTGTCTAGTCCAAGATTTTCATACGTGAACT|AGGGTGAAGGGGAACCAGAGCGCACAAGGGAACTGACTCAGGAGGCAGAGAAGATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATTCTGCCAGTTTTTTTCTCCAACTGCCTCTTCCTGGCTCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGTGCTGCTGTTGAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAGGGACTGCGCT...AAGAGCTTCCTCCTCGATGCCTACAAACAG___GTGAAATTGGGTGAGGATGCCCCCAATTCCAGTGTGGTGCATGTCTCCAGTACAGAAGGAGGTGACAACAG EDFKDFRDSCSSSERTDGRYSKYRVRRNSLQHHQDDTKYRTKSFKGDRTFLEGSHTRGLDHSSSWQDHSRFLSSPRFSYVN|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21216 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3625 TRUE 1367 CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80203288:- chr14:80663869-80854100:- chr14:80669631:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Iodothyronine_deiodinase(72%) |T4_deiodinase(6%) 1 2 4 546 262 ENST00000555265.6 ENST00000557010.5 upstream downstream mismatches(1) AAATTCTCTTCAGCATCACCAAGATGACACCAAGTACAGAACCAAAAGTTTCAAA___GGTGACAGAACCTTTCTGGAAGGTTCCCACACTCGTGGGTTAGATCACTCATCCTCTTGGCAGGATCACAGTCGCTTCCTGTCTAGTCCAAGATTTTCATACGTGAACT|GTGAAATTGGGTGAGGATGCCCCCAATTCCAGTGTGGTGCATGTCTCCAGTACAGAAGGAGGTGACAACAGTGGCAATGGTACCCAGGAGAAGATAGCTGAGGGAGCCACATGCCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTAGTGGTCAACTTTGGCTCAGCCACTTGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCCGCAAACTGGTGGAAGAGTTCTCCTCAGTGGCT NSLQHHQDDTKYRTKSFKGDRTFLEGSHTRGLDHSSSWQDHSRFLSSPRFSYVN|ceig* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21219 SUMF1::ENSG00000235978 ENSG00000144455.14::ENSG00000235978.8 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3626 TRUE 1368 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4410865:- chr3:3742498-4508957:- chr3:4452549:- ENSG00000235978 ENSG00000235978.8 lncRNA - - chr3:4793222-4887293:- chr3:4856745:- chr3:4834906-4928977:- chr3:4898429:- chr3:4410488,chr3:4410500 chr3:4867366,chr3:4867368 NA NA chr3:4452172,chr3:4452184 chr3:4909050,chr3:4909052 NA NA sense sense out-of-frame CDS/splice-site exon duplication high none Sulfatase-modifying_factor_enzyme_1(82%)| FGE-sulfatase(14%)| 12 14 8 260 39 ENST00000448413.5 ENST00000465436.5 upstream downstream mismappers(2) GGCCTGCATAATAG___ACTTTTCCCCTGGGGCAACAAACTGCAGCCCAAAGGCCAGCATTATGCCAACATTTGGCAGGGCGAGTTTCCGGTGACCAACACTGGTGAGGATGGCTTCCAAGGAACTGCGCCT___GTTGATGCCTTCCCTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA|ATGGGGTCAGGCCACAAGCCAAGGAACGGAGGCAGCCTCTTGAACCTGAAAAAGGCAAGAAAATGGATTCTCCCCTAGTGCCTTCAGAAGGAACGTGGACAAGCAGAACT___AGAGATTCTCTTGTAAAATGAGATCCATGTACAAAACTAG...ATATAAAAGTTTCCTTTCATATTTTTCATCCATCAAGAAAAGAAATCATGTGACAAGAAATAAAACCAAAATGTG GLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNP|mgsghkprnggsllnlkkarkwilp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21220 SUMF1::ENSG00000235978 ENSG00000144455.14::ENSG00000235978.8 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3626 TRUE 1368 SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4410865:- chr3:3742498-4508957:- chr3:4452549:- ENSG00000235978 ENSG00000235978.8 lncRNA - - chr3:4793222-4887293:- chr3:4831018:- chr3:4834906-4928977:- chr3:4872702:- chr3:4410488,chr3:4410500 chr3:4867366,chr3:4867368 NA NA chr3:4452172,chr3:4452184 chr3:4909050,chr3:4909052 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Sulfatase-modifying_factor_enzyme_1(82%)| FGE-sulfatase(14%)| 4 4 1 260 64 ENST00000448413.5 ENST00000441894.4 upstream downstream none AACTGCGCCT___GTTGATGCCTTCCCTCCCAATGGTTATGGCTTATACAACATAGTGGGGAACGCATGGGAATGGACTTCAGACTGGTGGACTGTTCATCATTCTGTTGAAGAAACGCTTAACCCA|GTTCAAAAGAAGAGGCTGTTCTAAGAAAGACTACCGAGTAATCAATCACCTCCTCAGAGAAAGTCTGCTCAG___GGACCAGC?CTGTGAACACGGC TAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNP|vqkkrlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21225 PAWR::ENSG00000257191 ENSG00000177425.11::ENSG00000257191.1 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3628 TRUE 1369 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613575:- chr12:79968759-80084744:- chr12:80007355:- ENSG00000257191 ENSG00000257191.1 lncRNA - - chr12:78960258-79045644:- chr12:78976669:- chr12:79354038-79439424:- chr12:79370449:- chr12:79605551,chr12:79605555 chr12:79028173,chr12:79028174 NA NA chr12:79999331,chr12:79999335 chr12:79421953,chr12:79421954 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 4 11 15 144 24 ENST00000328827.9 ENST00000548384.1 upstream downstream duplicates(1),mismatches(1) GGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG___TGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATTCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG|TTTAGTTTTCAACTCTCCAGAGGAAGCTGACATGGCAACACTCTGTTATTTGAAGATTTGAGTTTTCCTACTACAAG___GTGACATCTCCCAGAAGCCATCTCTAACCCTATTGATGTAAGTGAG...___GAAGAAGTTGTAACTTCTGACTTAGTATGAGGTTCAAGCCAGA QIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKs|lvfnspeeadmatlcylki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21226 PAWR::ENSG00000257191 ENSG00000177425.11::ENSG00000257191.1 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3628 TRUE 1369 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613575:- chr12:79968759-80084744:- chr12:80007355:- ENSG00000257191 ENSG00000257191.1 lncRNA - - chr12:78960258-79045644:- chr12:78960714:- chr12:79354038-79439424:- chr12:79354494:- chr12:79605551,chr12:79605555 chr12:79028173,chr12:79028174 NA NA chr12:79999331,chr12:79999335 chr12:79421953,chr12:79421954 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 2 0 7 144 34 ENST00000328827.9 ENST00000548384.1 upstream downstream none CAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATTCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG|GTGACATCTCCCAGAAGCCATCTCTAACCCTATTGATGTAAGTGAGAATCCTTCCTGGGTACCTGCGGATCCTGCAGCCCCCTTCATAACATGACACTGATGGTGCCGCTCTGAACTTGGTCCTCTTCAAGAGCCTGGGATGTCCCAGAGCAGGAAGCACGCGAGAACATTTGTTTGTTACATTTAGCTCACCAAATGGTTTCATTCATGCTAAAGGAACTCAGTTTTGTTGTTGGTGTTGCTGTTGTTGTTGTTTGGCATTTCTTTAAGATAAGGG QKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21227 DCAF7::TANC2 ENSG00000136485.16::ENSG00000170921.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE TRUE 1966 FALSE NA FALSE NA DCAF7 ENSG00000136485.16 protein_coding + + chr17:63550222-63594286:+ chr17:63550815:+ chr17:61627583-61671648:+ chr17:61628176:+ TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63379718:+ chr17:61043596-61505064:+ chr17:61457079:+ chr17:63565707,chr17:63565706 chr17:63361702,chr17:63361698 NA NA chr17:61643068,chr17:61643067 chr17:61439063,chr17:61439059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Tetratricopeptide_repeat(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),TPR_8(100%) 9 12 7 943 29 ENST00000431926.7 ENST00000689528.1 downstream upstream none GCCCGCCCCCTCCTCTCCTCCCTTCGGACCCATAGATCTCAGGCTCGGCTCCCCGCCCGCCGCAGCCCACTGTTGACCCGGCCCGTACTGCGGCCCCGTGGCCACCATGTCCCTGCACGGCAAACGGAAGGAGATCTACAAGTATGAAGCGCCCTGGACAGTCTACGCGATGAACTGGAGTGTGCGGCCCGATAAGCGCTTTCGCTTGGCGCTGGGCAGCTTCGTGGAGGAGTACAACAACAAG|GAGTGGTCACACGTTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAG___GGTTTGAGTAAAAAAGTTGGTGTATCATCCTCCATCCTCCAAGGTCTCTGGATCTCTTATAGCACAGAAGGTCTTTCCATGGCACTGGCGTCTTTACGAAATCTCTACACTCCAAATATAAAG___GTCAGCCGACTGCTGATTTTGG MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNK|ewshvtcllvfpprgktkptady* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21233 KDM4B::UHRF1 ENSG00000127663.15::ENSG00000276043.5 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KDM4B ENSG00000127663.15 protein_coding + + chr19:4969113-5153598:+ chr19:4969230:+ chr19:4969124-5153609:+ chr19:4969241:+ UHRF1 ENSG00000276043.5 protein_coding + + chr19:4903080-4962154:+ chr19:4960657:+ chr19:4903092-4962165:+ chr19:4960668:+ chr19:4984446,chr19:4984446 chr19:4957770,chr19:4957767 NA NA chr19:4984457,chr19:4984457 chr19:4957781,chr19:4957778 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 23 1 152 245 ENST00000159111.9 ENST00000612630.4 downstream upstream duplicates(2),mismatches(29) CGCCGAGGGCGGGGGAGAGCGCGCCGCTGCTCCCGGACCGGGCCGCGCACGCCGCCTCAG|GACTGCCTGGACAGATCCTTTCGGGCACAGGTGTTCAGCTGCCCTGCCTGCCGCTACGACCTGGGCCGCAGCTATGCCATGCAGGTGAACCAGCCTCTGCAGACCGTCCTCAACCAGCTCTTCCCCGGCTACGGCAATGGCCGGTGATCTCCAAGCACTTCTCGACAGGCGTTTTGCTGAAAACGTGTCGGAGGGCTCGTTCATCGGCACTGATTTTGTTCTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 4969241,5144913 TRUE,FALSE 4941540,4929234 FALSE,FALSE YES,YES 5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21234 SP100::ENSG00000235419 ENSG00000067066.17::ENSG00000235419.5 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SP100 ENSG00000067066.17 protein_coding + + chr2:230415942-230545606:+ chr2:230450255:+ chr2:231280657-231410321:+ chr2:231314970:+ ENSG00000235419 ENSG00000235419.5 lncRNA - + chr2:230520594-230580006:- chr2:230557857:+ chr2:231385309-231444721:- chr2:231422572:+ chr2:230454875,chr2:230454873 chr2:230550820,chr2:230550815 NA NA chr2:231319590,chr2:231319588 chr2:231415535,chr2:231415530 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none HSR_domain(100%)| HSR(100%)| 7 11 7 257 66 ENST00000340126.9 unknown downstream upstream low_entropy(1) AGATAAATGCAAAGAGAAAAGATACAACCAGTGACAAAGATGATTCGCTAGGAAGCCAACAAACAAATGAACAATGTGCTCAAAAGGCTGAGCCAACAG___AGTCCTGCGAACAAATTGCTGTCCAAGTGAATAATGGGGATGCTGGAAGGGAGATGCCCTGCCCGTTGCCCTGTGATGAAGAAA|GGCACACAGTTAAACTATATTTTCCAGGAATTCCTGCAGGTATGAGTGGCCTATGACCGAGTTCTAGATAGAGGAACATCTGAGGAAGACATGTGCCTAGTTCCAAGGCTGACCCATAAAAGCTTCTTACACGTACTGCCCCACAATCTTTCCTCTGCCATGAACTGGATGGCAGTCTCCAAGTAAGGACACCCTTGGAAGCCATGAGTGTCAAAACCTCCATCAGTCTGAGACCATGCATAATTACATGGAAGAGAGCCC INAKRKDTTSDKDDSLGSQQTNEQCAQKAEPTESCEQIAVQVNNGDAGREMPCPLPCDEE|rhtvklyfpgipagmsgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21235 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3631 TRUE 1370 PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42248665:+ chr18:39739247-40271387:+ chr18:39828630:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none Phosphoinositide_3-kinase_C2(100%)| PI3K_C2(100%)| 11 1 12 165 19 ENST00000262039.9 unknown downstream upstream duplicates(1),mismatches(1) TTGAAAGTCTGGCCTAATGTAGAAGCAGATGGATCAGAACCCACAAAAACTCCTGGCAGAACAAGTAGCACTCTCTCAGAAGATCAGATGAGCCGTCTTGCCAAG___CTCACCAAAGCTCATCGACAAGGACACATGGTGAAAGTAGATTGGCTGGATAGATTGACATTTAGAGAAATAGAAATGATAAATGAG___AGTGAAAAACGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTGATGATAAGGAATATGGTATTGTTTATTATGAAAAG|GTTTTTACATGCTACAGTTACAAAGGCTGAGATTCACCAACAGAAGCCCATGAAGTTGTTGGCATATCCTTAAGTGTGTTTCTCATTTTAGTGCTGGGATATTTGAAACAGGCCATCACATTTTCCATAAATCTCATCTTTTCTAATTCAC LKVWPNVEADGSEPTKTPGRTSSTLSEDQMSRLAKLTKAHRQGHMVKVDWLDRLTFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEK|vftcysykg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21236 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3631 TRUE 1370 PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42433050:+ chr18:39739247-40271387:+ chr18:40013015:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Phosphoinositide_3-kinase_C2(100%)| PI3K_C2(100%)| 0 2 1 165 12 ENST00000262039.9 ENST00000593316.5 downstream upstream none CGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTGATGATAAGGAATATGGTATTGTTTATTATGAAAAG|GTGTCATAAACTTTCTAAGACAGTGCCTTGCCTGAAGACTATGAGTTTCTGTGCATCCTAGGACCTTTATGGA...TAATACAGTTCAAATCTAAATGTCTGCTCTTGCATTTCTGTGACTTTTCATGCCATGCTGAAAATCTGGAATGGAAACTCTCATCCATCTTGGTGATTTCC...GATGACTTCATTTAAAAGCATTTGAAGATTTAAGTTCTTTCTGAGATGTGCTCTTGTTTTCAGGAATAAAAGTGACATTATGATGAGTTA RSSNFMYLMVEFRCVKCDDKEYGIVYYEK|vs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21237 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3631 TRUE 1370 PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42453932:+ chr18:39739247-40271387:+ chr18:40033897:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Phosphoinositide_3-kinase_C2(100%)| PI3K_C2(100%)| 2 0 1 165 35 ENST00000262039.9 ENST00000589068.5 downstream upstream none ATGGATCAGAACCCACAAAAACTCCTGGCAGAACAAGTAGCACTCTCTCAGAAGATCAGATGAGCCGTCTTGCCAAG___CTCACCAAAGCTCATCGACAAGGA...TGACATTTAGAGAAATAGAAATGATAAATGAG___AGTGAAAAACGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTGATGATAAGGAATATGGTATTGTTTATTATGAAAAG|GCACTTCTAGATATCTGTTGAGGCCTGGAAGGGGCAAAACAATTCAGGAAGCAGTTGAAGATAAAGGGGTTTACCATGGAAGAGAAGATCCAGGTGCCTTCATGGAAATGCT TFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEK|alldic* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21238 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3631 TRUE 1370 PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42335084:+ chr18:39739247-40271387:+ chr18:39915049:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphoinositide_3-kinase_C2(100%)| PI3K_C2(100%)| 7 1 7 165 45 ENST00000262039.9 ENST00000589068.5 downstream upstream mismatches(1) ACCAAAGCTCATCGACAAGGACACATGGTGAAAGTAGATTGGCTGGATAGATTGACATTTAGAGAAATAGAAATGATAAATGAG___AGTGAAAAACGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTGATGATAAGGAATATGGTATTGTTTATTATGAAAAG|CTCCAGTGCCATGACAGTTTTAATCTTCTGGTTCCATCTGCATAGATTTCAGTCTCTAATTGAaGAAAATCATCTGTTTTTCTCAGGAGCCCCTTGATTCAAGTTTACACAAAATGTGCCTTTGGAGACTATCCTGTTAATTaAAACAGTTCAGATCCCACTTGTATGTGAGACAGATGCTTCTCTGGCCATCAGCCAGGTACCACTAAAGGAtGTACAG TKAHRQGHMVKVDWLDRLTFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEK|lqchdsfnllvpsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21239 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3631 TRUE 1370 PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42289504:+ chr18:39739247-40271387:+ chr18:39869469:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphoinositide_3-kinase_C2(100%)| PI3K_C2(100%)| 1 2 9 165 55 ENST00000262039.9 ENST00000593234.5 downstream upstream mismatches(1) AGGACACATGGTGAAAGTAGATTGGCTGGATAGATTGACATTTAGAGAAATAGAAATGATAAATGAG___AGTGAAAAACGAAGTTCTAATTTCATGTACCTGATGGTTGAATTTCGATGTGTCAAGTGTGATGATAAGGAATATGGTATTGTTTATTATGAAAAG|ATGCACATTGTTCTTTTGGTTGTGAAAAATTCGAAGAAGTAGATGTGGTCCTGGTTGATGGATGAACATTGAGGCCCTCAAGTGCATAAAG___CTCCAGTGCCATGACAGTTTTAATCTTCTGGTTCCATCTGCATAGATTTCAG GHMVKVDWLDRLTFREIEMINESEKRSSNFMYLMVEFRCVKCDDKEYGIVYYEK|mhivllvvknskk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21242 ENSG00000288894::TANC2 ENSG00000288894.1::ENSG00000170921.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288894 ENSG00000288894.1 protein_coding + + chr17:63550603-63608347:+ chr17:63550815:+ chr17:61627964-61685707:+ chr17:61628176:+ TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63379718:+ chr17:61043596-61505064:+ chr17:61457079:+ chr17:63565707,chr17:63565706 chr17:63361702,chr17:63361698 NA NA chr17:61643068,chr17:61643067 chr17:61439063,chr17:61439059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Tetratricopeptide_repeat(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),TPR_8(100%) 6 12 5 943 29 ENST00000690765.1 ENST00000689528.1 downstream upstream none CGCCCGCCGCAGCCCACTGTTGACCCGGCCCGTACTGCGGCCCCGTGGCCACCATGTCCCTGCACGGCAAACGGAAGGAGATCTACAAGTATGAAGCGCCCTGGACAGTCTACGCGATGAACTGGAGTGTGCGGCCCGATAAGCGCTTTCGCTTGGCGCTGGGCAGCTTCGTGGAGGAGTACAACAACAAG|GAGTGGTCACACGTTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAG___GGTTTGAGTAAAAAAGTTGGTGTATCATCCTCCATCCTCCAAGGTCTCTGGATCTCTTATAGCACAGAAGGTCTTTCCATGGCACTGGCGTCTTTACGAAATCTCTACACTCCAAATATAAAG___GTCAGCCGACTGCTGATTTTGG MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNK|ewshvtcllvfpprgktkptady* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21250 MTFR1::PDE7A ENSG00000066855.16::ENSG00000205268.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3634 TRUE 1371 MTFR1 ENSG00000066855.16 protein_coding + + chr8:65644734-65771261:+ chr8:65682451:+ chr8:66556969-66683496:+ chr8:66594686:+ PDE7A ENSG00000205268.11 protein_coding - + chr8:65714334-65842322:- chr8:65819953:+ chr8:66626569-66754557:- chr8:66732188:+ chr8:65688441,chr8:65688441,chr8:65688441,chr8:65688441,chr8:65688441,chr8:65688441,chr8:65688441 chr8:65792421,chr8:65792426,chr8:65792402,chr8:65792400,chr8:65792386,chr8:65792420,chr8:65792385 NA NA chr8:66600676,chr8:66600676,chr8:66600676,chr8:66600676,chr8:66600676,chr8:66600676,chr8:66600676 chr8:66704656,chr8:66704661,chr8:66704637,chr8:66704635,chr8:66704621,chr8:66704655,chr8:66704620 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Mitochondrial_fission_regulator(14%)| Mito_fiss_reg(0%)| 10 3 7 138 24 ENST00000262146.9 unknown downstream upstream low_entropy(1),mismappers(1),mismatches(1) TGTTTTATGGACCATGTGCTGCTATGTATGCCTGAAGAAGTACTTGAAATGCAAATTTGGGGAGACTTTGCCATATAAATGCTTGGCTGGATTAAGCGCCTAATTAGGATGGTTTTTCAACAAGTTGGAGTAAGCATGCAATCG___GTACTTTGGTCTAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAATTGGTACTAATTTGTCTCTGATTCAGTGTCCAAGAGTTCAGTTTCAG|ACTGAAGTGTGAAATTGTACAACCATGACAAGTGGATCCCTGTATTACTTCATGGAGCAGAATAGAATATCTCCAACCTACTACATGACAGCAAAATAAAATGTTATCTTATTATGAAGACTAAGTAACTGTAAAAATCCACATTTTAAAAAGTATTACATGGCCAGGTGTGATGGCTCACGCCTGTCATCCCAgCACGTTGGGAGGCCG MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQ|tev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21251 MTFR1::PDE7A ENSG00000066855.16::ENSG00000205268.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3634 TRUE 1371 MTFR1 ENSG00000066855.16 protein_coding + + chr8:65644734-65771261:+ chr8:65682451:+ chr8:66556969-66683496:+ chr8:66594686:+ PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65788978:- chr8:66626569-66754557:- chr8:66701213:- chr8:65688441,chr8:65688440 chr8:65792440,chr8:65792441 NA NA chr8:66600676,chr8:66600675 chr8:66704675,chr8:66704676 NA NA sense sense out-of-frame CDS/splice-site 5'UTR inversion high none Mitochondrial_fission_regulator(14%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%) Mito_fiss_reg(0%)|PDEase_I(100%) 7 4 7 138 31 ENST00000262146.9 ENST00000523253.1 downstream downstream low_entropy(1),mismatches(2) CGGAGAGGGTGCTGGCTGCCGCGCGGCCGAG___TGTGTTTTATGGACCATGTGCTGCTATGTATGCCTGAAGAAGTACTTGAAATGCAAATTTGGGGAGACTTTGCCATATAAATGCTTGGCTGGATTAAGCGCCTAATTAGGATGGTTTTTCAACAAGTTGGAGTAAGCATGCAATCG___GTACTTTGGTCTAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAATTGGTACTAATTTGTCTCTGATTCAGTGTCCAAGAGTTCAGTTTCAG|AAGAGAGAGATTATGCAGCGGGCTTTTGATTGATCCAATGGGAATTACATTGATCTGGTGTCTGGCCTTGGTTCTTATCAAGTGGATCACCTCTAAG___AGGCt MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQ|kreimqrafd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21252 MTFR1::PDE7A ENSG00000066855.16::ENSG00000205268.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3634 TRUE 1371 MTFR1 ENSG00000066855.16 protein_coding + + chr8:65644734-65771261:+ chr8:65682451:+ chr8:66556969-66683496:+ chr8:66594686:+ PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65788981:- chr8:66626569-66754557:- chr8:66701216:- chr8:65688441,chr8:65688440 chr8:65792440,chr8:65792441 NA NA chr8:66600676,chr8:66600675 chr8:66704675,chr8:66704676 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Mitochondrial_fission_regulator(14%)|3'5'-cyclic_nucleotide_phosphodiesterase(100%) Mito_fiss_reg(0%)|PDEase_I(100%) 3 1 7 138 31 ENST00000262146.9 ENST00000523253.1 downstream downstream duplicates(1),low_entropy(1),mismatches(3) GCTAGAAGCCTGAGGAGCCGGAGAGGGTGCTGGCTGCCGCGCGGCCGAG___TGTGTTTTATGGACCATGTGCTGCTATGTATGCCTGAAGAAGTACTTGAAATGCAAATTTGGGGAGACTTTGCCATATAAATGCTTGGCTGGATTAAGCGCCTAATTAGGATGGTTTTTCAACAAGTTGGAGTAAGCATGCAATCG___GTACTTTGGTCTAGGAAGCCATATGGTTCGTCTCGAAGTATCGTAAGGAAAATTGGTACTAATTTGTCTCTGATTCAGTGTCCAAGAGTTCAGTTTCAG|TAGAAGAGAGAGATTATGCAGCGGGCTTTTGATTGATCCAATGGGAATTACATTGATCTGGTGTCTGGCCTTGGTTCTTATCAAGTGGATCACCTCTAAG___AGGC MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21255 PXK::FLNB ENSG00000168297.16::ENSG00000136068.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE TRUE 1973 FALSE NA FALSE NA PXK ENSG00000168297.16 protein_coding + + chr3:58332880-58426127:+ chr3:58333090:+ chr3:58318607-58411854:+ chr3:58318817:+ FLNB ENSG00000136068.16 protein_coding + + chr3:58008398-58172251:+ chr3:58142650:+ chr3:57994125-58157978:+ chr3:58128377:+ chr3:58342100,chr3:58342101 chr3:58142350,chr3:58142348 NA NA chr3:58327827,chr3:58327828 chr3:58128077,chr3:58128075 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PX_domain(9%)|Filamin/ABP280_repeat(30%) PX(0%)|Filamin(33%) 5 6 5 213 27 ENST00000383716.7 ENST00000358537.7 downstream upstream none GCGGGAGTCGGCGCCTCGGGTTCCTACCTCGCGTCCCTAGGCGGCGGCGGCCGGGCGTCCCGGGATGGCCTTCATGGAGAAGCCGCCAGCCGGCAAGGTGCTGCTGGACGACACGGTGCCGCTGACAGCAGCCATCGAGGCGAGCCAGAGCCTGCAGTCCCACACG|GTGACCGAAGAGGCCTATGTCCCAGTGAGTGACATGAACGGCCTGGGATTTAAGCCTTTTGACCTGGTCATTCCGTTTGCTGTCAGGAAAGGAGAAATCACTG___GAGAGGTCCACATGCCTTCTGGGAAGACAGCCACACCTGAGATTGTGGACAACAAGG MAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHT|VTEEAYVPVSDMNGLGFKPFDLVIPFAVRKGEITGEVHMPSGKTATPEIVDNK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE PX domain-containing protein kinase-like protein Other Slob Q7Z7A4 FALSE NA NA NA NA NA NA TRUE Liver no_match TRUE Liver hepatocellular carcinoma LIVER no_match 58318817 TRUE 58145281 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21257 PLSCR1::BFSP2 ENSG00000188313.13::ENSG00000170819.5 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146544467:- chr3:146232967-146262643:- chr3:146262254:- BFSP2 ENSG00000170819.5 protein_coding + - chr3:133400056-133475222:+ chr3:133427335:- chr3:133118900-133194066:+ chr3:133146179:- chr3:146540869,chr3:146540871 chr3:133475269,chr3:133475268 NA NA chr3:146258656,chr3:146258658 chr3:133194113,chr3:133194112 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 2 4 0 410 23 ENST00000342435.9 unknown upstream downstream none GAGAAGGTTGCGCAGCAGCTGTGCCCGGCAGTCTAGAGGCGCAGAAGAGGAAGCCATCGCCTGGCCCCGGCTCTCTGGACCTTGTCTCGCTCGGGAGCGGAAACAGCGGCAGCCAGAG|GGAGGCTGTGAGGATCTAGAGGATACAGCTACGGAGAACATGCTGGGTTCCTTGAGCTGCTAAGCACTGAAGTCCCACCAATGGTGACGAAGGTCTAAGGAGAACATTGCAATTGCACAAAATGATCCTTGGAAATTCTTTAGAAGGGCACCATCTTGGAGACCCAGAATCAATAAAACCAGCA...ATCATGAGAGGCACAGGGGAAATGAGCCAGCCTGTCTGGAAAGGAAGCAAATGCATGCTTTCCATCTCCCACTCAGTACTGGACATGAAGCTATGTCATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21258 STS::ENSG00000285679 ENSG00000101846.9::ENSG00000285679.2 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3636 TRUE 1372 STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7148083:+ chrX:7065278-7772399:+ chrX:7066124:+ ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:8062611:+ chrX:7896484-8342427:+ chrX:8030652:+ chrX:7177049,chrX:7481950,chrX:7481948,chrX:7177050 chrX:8027388,chrX:7932757,chrX:7932752,chrX:8027386 NA NA chrX:7095090,chrX:7399991,chrX:7399989,chrX:7095091 chrX:7995429,chrX:7900798,chrX:7900793,chrX:7995427 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none HAD_2(100%),Hydrolase(99%)| 0 1 4 159 2 ENST00000674429.1 ENST00000649338.1 downstream upstream none CGGGGCCAGCCGGGGGCAGAGCGCGCGGGAGCCCGAGCGTCCCTGCATGAACACCGCCCCGCCGCGGCCCCCAGGCCGTGACGTACCCCGCGCCGACCGTC...AGAAGAAGTCCGTCCATGTCAAAGATGAG|ATGAGACTGTCCAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTACATGATG___GACTCCAGAAACTGGGCCCATATAAGAACACACAAGGAGGCATCGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-4767 chrX:7147860-7147937:+ TRUE hsa-mir-651 chrX:8126965-8127061:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21259 STS::ENSG00000285679 ENSG00000101846.9::ENSG00000285679.2 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3636 TRUE 1372 STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7148083:+ chrX:7065278-7772399:+ chrX:7066124:+ ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:8228335:+ chrX:7896484-8342427:+ chrX:8196376:+ chrX:7177049,chrX:7481950,chrX:7481948,chrX:7177050 chrX:8027388,chrX:7932757,chrX:7932752,chrX:8027386 NA NA chrX:7095090,chrX:7399991,chrX:7399989,chrX:7095091 chrX:7995429,chrX:7900798,chrX:7900793,chrX:7995427 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none HAD_2(100%),Hydrolase(99%)| 1 1 3 159 6 ENST00000674429.1 ENST00000659022.1 downstream upstream none CGGGGCCAGCCGGGGGCAGAGCGCGCGGGAGCCCGAGCGTCCCTGCATGAACACCGCCCCGCCGCGGCCCCCAGGCCGTGACGTACCCCGCGCCGACCGTCCCCACGCCCACACAAGACCGCCCTTcCTGGA...AGAAGTCCGTCCATGTCAAAGATGAG|CACTTACAAATTCATGGACTATTATGAAGACAAGTTAAGAGATTGTGTCCTCCAAACTCATCATTTTTCAGGTAA...___GGACCCATGGGATGATAGTTCCACCTCAAAATCCTTGACTTAAGACACCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-4767 chrX:7147860-7147937:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21260 STS::ENSG00000285679 ENSG00000101846.9::ENSG00000285679.2 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3636 TRUE 1372 STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7147602:+ chrX:7065278-7772399:+ chrX:7065643:+ ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:8062611:+ chrX:7896484-8342427:+ chrX:8030652:+ chrX:7177049,chrX:7481950,chrX:7481948,chrX:7177050 chrX:8027388,chrX:7932757,chrX:7932752,chrX:8027386 NA NA chrX:7095090,chrX:7399991,chrX:7399989,chrX:7095091 chrX:7995429,chrX:7900798,chrX:7900793,chrX:7995427 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none HAD_2(99%),Hydrolase(99%)| 1 0 3 8 2 ENST00000664306.2 ENST00000649338.1 downstream upstream mismappers(2) CAGCCAGGCCACTTGACGGACCTTCTGTGCCTCTACACTGTTGACGGCGCGGGATAATTCCTTATGGTTGCATAGGGCACTCCTGTGCACTGCGGGAAGTTTAACAGTATCACTGGTCTGGACTCCACTAGATGCCAGTGACCCCATCACTCCTCGCCAGCTGTGACAGCCAAAATGTCTCCTGACATCGCCATTGCCAGATGCCCTCAGGGCTGCAAAACCGCCAGGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTGCGCCCACAGCAGCAACCTTGGAGCAGGCAG|ATGAGACTGTCCAGTTGCAGGAAAACAAGCTCAGGGCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-651 chrX:8126965-8127061:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21261 STS::ENSG00000285679 ENSG00000101846.9::ENSG00000285679.2 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3636 TRUE 1372 STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7147600:+ chrX:7065278-7772399:+ chrX:7065641:+ ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:8228333:+ chrX:7896484-8342427:+ chrX:8196374:+ chrX:7177049,chrX:7481950,chrX:7481948,chrX:7177050 chrX:8027388,chrX:7932757,chrX:7932752,chrX:8027386 NA NA chrX:7095090,chrX:7399991,chrX:7399989,chrX:7095091 chrX:7995429,chrX:7900798,chrX:7900793,chrX:7995427 NA NA sense sense unknown 5'UTR/splice-site intron deletion high none none HAD_2(99%),Hydrolase(99%)| 0 1 2 8 6 ENST00000664306.2 ENST00000659022.1 downstream upstream none CAGCCAGGCCACTTGACGGACCTTCTGTGCCTCTACACTGTTGACGGCGCGGGATAATTCCTTATGGTTGCATAGGGCACTCCTGTGCACTGCGGGAAGTTTAACAGTATCACTGGTCTGGACTCCACTAGATGCCAGTGACCCCATCACTCCTC...CCGCCAGGTAGAGAACCGCTACCATGCAGGATGCTACCATCAAAGTGCGCCCACAGCAGCAACCTTGGAGCAGGC|AGCACTTACAAATTCATGGACTATTATGAAGACAAGTTAAGAGATTGTGTCCTCCAAACTtATCATTTTTCAGGTAAGGAAACTTACGTTCAGAGATATTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21263 PAWR::SYT1 ENSG00000177425.11::ENSG00000067715.15 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613575:- chr12:79968759-80084744:- chr12:80007355:- SYT1 ENSG00000067715.15 protein_coding + - chr12:78863993-79452008:+ chr12:79020433:- chr12:79257773-79845788:+ chr12:79414213:- chr12:79605551,chr12:79605555 chr12:79028173,chr12:79028174 NA NA chr12:79999331,chr12:79999335 chr12:79421953,chr12:79421954 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 1 1 2 144 4 ENST00000328827.9 unknown upstream downstream mismatches(1) GGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG___TGCTTAGATGAGTACGAAGATGATGAAGCA...CAACAGAACACTATTCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAG___GAGCCACCTAGAACAGTTTCAGGCAGATATAAAAG|AGAGGAGGAGAACCAGTGTGAGCTTTTATTATTCTGCCAGGGAAATGTCCTGGGCATCCTGTTAATTGAAATGGACAACTTCCTAGGCTCAAAAAATCTGTCAGGTGGACTTGTTGC QQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKr|eeenqcelllfcqgnvlgilliemdnflgsknlsgglv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21264 CEP97::SENP7 ENSG00000182504.12::ENSG00000138468.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP97 ENSG00000182504.12 protein_coding + + chr3:101724534-101770562:+ chr3:101724719:+ chr3:101443378-101489406:+ chr3:101443563:+ SENP7 ENSG00000138468.16 protein_coding - + chr3:101324205-101513241:- chr3:101512152:+ chr3:101043049-101232085:- chr3:101230996:+ chr3:101725196,chr3:101725195 chr3:101474002,chr3:101473998 NA NA chr3:101444040,chr3:101444039 chr3:101192846,chr3:101192842 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 0 2 1 31 4 ENST00000704365.1 unknown downstream upstream none CACAGAGCCGCGGGAGGACGGTTGCCTGGTATTATTAGCAAGCAGCAAATATGGCGGTGGCGCGCGTGGACGCGGCTTTGCCTCCCGGAGAAG|AAACCAACGGTACCATCAGAAACAGAAAAATGAAATGAAATAATTGATTCATTGGGCGTTCGTTTGTGTACTGGACTGTAAGCATATGAGTCCTCGTCCTCTCCTCCTACCATCCATAGGACTTAACACAAGGACTTGAGGACCCCCTAATGGATG MAVARVDAALPPGE|etngtirnrkmk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21266 NIHCOLE::ENSG00000251574 ENSG00000251026.2::ENSG00000251574.8 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NIHCOLE ENSG00000251026.2 lncRNA + + chr5:104079847-104406121:+ chr5:104104287:+ chr5:103415548-103741822:+ chr5:103439988:+ ENSG00000251574 ENSG00000251574.8 lncRNA - + chr5:104383298-105392970:- chr5:104613209:+ chr5:103718999-104728671:- chr5:103948910:+ chr5:104385669,chr5:104385669 chr5:104587002,chr5:104586999 NA NA chr5:103721370,chr5:103721370 chr5:103922703,chr5:103922700 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 1 0 73 5 ENST00000666145.1 unknown downstream upstream low_entropy(1),mismappers(1) GTTTTTTAAGCCCGTCGGAAAAGCACAGTATTCGGGTGGGAGTGACCCGATTTTCCAG___GTTGCTAATTCTCTCTGTTGGTAATATCTTTTGATGCTGTTGTGTCCAGAATTGATTCATTCCTGTGGGTTCTTGGTCTCACTGACTTCAAGAATAAAGCTGCGGACCCTAGTG|GAGAACTGAAGGAAAACCAAGAGAGACTACTTCAAACCAGATTCTGTGGCAAAAGGAAGCTTAAGTGGTATGGCCAGAGGATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21269 EIF3B::CHST12 ENSG00000106263.19::ENSG00000136213.10 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3637 FALSE NA EIF3B ENSG00000106263.19 protein_coding + + chr7:2354086-2380745:+ chr7:2364529:+ chr7:2393721-2420380:+ chr7:2404164:+ CHST12 ENSG00000136213.10 protein_coding + + chr7:2403588-2448484:+ chr7:2432563:+ chr7:2443223-2488119:+ chr7:2472198:+ chr7:2366464,chr7:2366461,chr7:2366464,chr7:2366459 chr7:2424557,chr7:2424551,chr7:2424552,chr7:2424544 NA NA chr7:2406099,chr7:2406096,chr7:2406099,chr7:2406094 chr7:2464192,chr7:2464186,chr7:2464187,chr7:2464179 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|Sulfotransferase_family(100%) RRM_1(100%),eIF2A(10%)|Sulfotransfer_2(100%) 8 12 20 1848 1760 ENST00000360876.9 ENST00000258711.7 downstream upstream duplicates(2),mismatches(1) AAAGACCCTGTCTCAATTGAAGAAAGAGCG___AGATGGACAGAGACGTATGTGCGTTGGTCTCCTAAGGGCACCTACCTGGCTACCTTTCATCAAAGAGGCATTGCTCTATGGGGGGGAGAGAAATTCAAGCAAATTCAGAGATTCAGCCACCAAGGGGTTCAGCTTATTGACTTCTCACCTTGTGAAAG|GTTCCCAGCAGGATGCCCCGGCTCTGCAGGAAGCTGAAGTGAGAGGCCCGGAGAGGGCCCAGCCCGCCCGGGGCAGGATGACCAAGGCCCGGCTGTTCCGGCTGTGGCTGGTGCTGGGGTCGGTGTTCATGATCCTGCTGATCATCGTGTACTGGGACAGCGCAGGCGCCGCGCACTTCTACTTGCACACGTCCTTCTCTAGGCCGCACACGGGGCCGCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCACGGCCGACTCCGATGTCGACGAGTTTCTGGACAAGTTTCTCAGTGCTGGCGTGAAGCAGAGCGACCTTCCCAGAAAGGAGACGGAGCAGCCGCCTGCG KDPVSIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCEr|fpagcpgsags* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21272 MYC::PLXNC1 ENSG00000136997.22::ENSG00000136040.9 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127741713:+ chr8:128747680-128755197:+ chr8:128753959:+ PLXNC1 ENSG00000136040.9 protein_coding + + chr12:94148577-94307675:+ chr12:94149698:+ chr12:94542353-94701451:+ chr12:94543474:+ NA NA chr8:127741715,chr8:127741716 chr12:94149703,chr12:94149701 NA NA chr8:128753961,chr8:128753962 chr12:94543479,chr12:94543477 sense sense unknown 3'UTR CDS translocation medium none Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%)|IPT/TIG_domain(100%),Plexin_cytoplasmic_RasGAP_domain(100%),Plexin_repeat(100%) HLH(100%),Myc-LZ(100%),Myc_N(100%)|PSI(100%),Plexin_cytopl(100%),TIG(100%) 3 4 7 11 15 ENST00000621592.8 ENST00000258526.9 downstream upstream mismatches(1) GCCAAATCTTAAGTTGTGAATGTTTTGTTTCGTTTCTTCCCCCTCCCAAtCACCACCATCCCTGTTTGTTTTCATCAATTGCCCCTTCAGAGGGTGGTCTTAAGAAAGGCAAGAGTTTTCCTCTGTTGAAATGGGTCTGGGGGCCTTAAGGTCTTTAAGTTCTTGGAGGTTCTAAGATGCTTCCTGGAGACTATGATAACAGCCAGAGTTGACAGTTAGAAGGAATGGCAGAAGGCAGGTGAGAAGGTGAGAGGTAGGCAAAGGAGATACAAGAGGTCAAAGGTAGCAGTT|AGagTCTACTTCCCCTACTACCCCTACAACTACACGAGCGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACCGAGGTGCTGTTCCAGGGCCAGGCATCCCTCGACTGCGGCCACGGCCACCCCGACGGCCGCCGCCTGCTCCTCTCCTCCAGCCTAGTGGAGGCCCTGGACGTCTGGGCGGGAGTGTTCAGCGCGGCCGCTGGAGAGGGCCAGGAGCGGCGCTCCCCCACCACCACGGCGCTCTGCCTCTTCA...ACTGC___AAAGAAGGGGATCAACCTGAAAGAGTCCAACCAATCGCATCATCTACCTTGATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTAATGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 21281 TMEM50B::DONSON ENSG00000142188.17::ENSG00000159147.18 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3640 TRUE 1373 TMEM50B ENSG00000142188.17 protein_coding - - chr21:33432485-33479974:- chr21:33447018:- chr21:34804792-34852281:- chr21:34819325:- DONSON ENSG00000159147.18 protein_coding - - chr21:33559542-33588706:- chr21:33559707:- chr21:34931848-34961012:- chr21:34932013:- chr21:33445424,chr21:33445429 chr21:33560872,chr21:33560875 NA NA chr21:34817731,chr21:34817736 chr21:34933178,chr21:34933181 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication medium none Uncharacterised_protein_family_(UPF0220)(100%)| UPF0220(100%)| 1 0 5 46 746 ENST00000468874.2 ENST00000439593.1 upstream downstream mismatches(1) GTGCATATGTTACCCAAA___GCTGGAGTGCAGTGGTGCAACCACAGCTCACTGCACCTTCAAATGCTGGAGCTCAGGCAATCCTCTTACCTCCGCTTTCCAAG...CTGGGACCACAG___ATGGAGTTTTGCTCTTGTCACCCAGGCTGGAGTGTAGTGGTGCAATCTCAGCTCACTGCAACCTCTGTCTCCCAGGTTCAAATGGTTCTCGTGCCTCAGCCTCCCGAGTAGCTGGGGTTACAG|GAACCCATTCTCCATAAACACTATCCGCTTCTTTTTTCCGATGTTGAGATCCAGATGATACAGGGAATTCTTTTGTTAATGTTACCTGGCTTTTTGGTGGAGTTGGTTTTGCTGCAGCAATCTAAAAAATAAAGTGTTTCTTAATTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21282 TMEM50B::DONSON ENSG00000142188.17::ENSG00000159147.18 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3640 TRUE 1373 TMEM50B ENSG00000142188.17 protein_coding - - chr21:33432485-33479974:- chr21:33448782:- chr21:34804792-34852281:- chr21:34821089:- DONSON ENSG00000159147.18 protein_coding - - chr21:33559542-33588706:- chr21:33559707:- chr21:34931848-34961012:- chr21:34932013:- chr21:33445424,chr21:33445429 chr21:33560872,chr21:33560875 NA NA chr21:34817731,chr21:34817736 chr21:34933178,chr21:34933181 NA NA sense sense unknown 3'UTR/splice-site 3'UTR/splice-site duplication medium none Uncharacterised_protein_family_(UPF0220)(100%)| UPF0220(100%)| 3 0 2 206 746 ENST00000420455.5 ENST00000439593.1 upstream downstream mismatches(2) TTTTTTTTTAAAGACAATATCTCACTCTGTTGCCTAGGCTGGAGTGCAGTGGTGCAACCACAGCTCACTGCACCTTCAAATGCTGGAGCTCAGGCAATCCTCTTACCTCCGCTTTCCAAGCAGCTGGGACCACAG|GAACCCATTCTCCATAAACACTATCCGCTTCTTTTTTCCGATGTTGAGATCCAGATGATACAGGGAATTCTTTTGTTAATGTTACCTGGCTTTTTGGTGGAGTTGGTTTTGCTGCAGCAATCTAAAAAATAAAGTGTTTCTTAATTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21287 SIK2::ENSG00000258529 ENSG00000170145.5::ENSG00000258529.5 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIK2 ENSG00000170145.5 protein_coding + + chr11:111602449-111730855:+ chr11:111712375:+ chr11:111473173-111601579:+ chr11:111583099:+ ENSG00000258529 ENSG00000258529.5 protein_coding - + chr11:111786286-111879425:- chr11:111871950:+ chr11:111657010-111750149:- chr11:111742674:+ chr11:111717988,chr11:111717988,chr11:111717989 chr11:111871074,chr11:111871075,chr11:111871072 NA NA chr11:111588712,chr11:111588712,chr11:111588713 chr11:111741797,chr11:111741798,chr11:111741795 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Protein_kinase_domain(100%)| Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 1 3 1 208 5 ENST00000304987.4 unknown downstream upstream none AGCGCCTGAAATCACATCGGAGCAGTTTCCCAGTGGAGCAGAGACTTGATGGCCGCCAGCGTCGGCCTAGCACCATTGCTGAGCAAACAGTTGCCAAG___GCA...CGTGGAGGCCTTTTCATTTCCAGCATCTGGCTGTCAGGCGGAAGCTGCATTCATGGAAGAAGAGTGTGTGGACACTCCAAAG|AGTGACAGAGGCAGCCTGTAGCTAAAAACTGCTTCAGAGAGACAAACCGGTAATGGCAGAGTGTAGACTGATGAAATTCTGTGCGGCAAATTGAAC...CATCACTGTCATCGCTACTACGGCATTGTG___TTCAAAGACATCTGCCAGCTGGGTGCAGTCCACACCGAAACGTACATCGATACCTGGCAAAGATAGTTTGG VEAFSFPASGCQAEAAFMEEECVDTPK|sdrgsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase SIK2 CAMK CAMKL QIK Q9H0K1 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21299 CBX5::ZNF385A ENSG00000094916.16::ENSG00000161642.18 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CBX5 ENSG00000094916.16 protein_coding - - chr12:54230942-54280133:- chr12:54280008:- chr12:54624726-54673917:- chr12:54673792:- ZNF385A ENSG00000161642.18 protein_coding - - chr12:54369133-54391298:- chr12:54384564:- chr12:54762917-54785082:- chr12:54778348:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Zinc-finger_of_C2H2_type(100%) |zf-C2H2_jaz(100%),zf-met(100%) 1 2 1 757 26 ENST00000209875.9 ENST00000338010.9 upstream downstream none GGCGGTTGGCGTTGCGCAGAAGGCGGCGGCGGTGGTGGCTTGTGGTGCGGCCTCACCATACAGGAACAGGGCAGACGTTAGCGTGAGTGATCACTCTCAATCCCGG|GCAGCCTGAGCCGGGCAGGGCCCCTGCCTCTGCTACGGCAGCCCCCGATCATGCAGCCCCCACTGGACCTCAAGCAGATCCTGCCCTTCCCACTCGAGCCAGCCCCTACCCTTGGCCTCTTCAGCAACTACAGCACC___ATGGACCCTGTGCAGAAGGCTGTGCTCTCCCACACTTTTGGGGGACCCTTGCTCAAGACCAAGCGGCCCGTCATTTCCTGTAATATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21307 RABGAP1L::RABGAP1L-DT ENSG00000152061.24::ENSG00000227373.6 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174159657:+ chr1:174128548-174964445:+ chr1:174128795:+ RABGAP1L-DT ENSG00000227373.6 lncRNA - + chr1:174110268-174160165:- chr1:174158915:+ chr1:174079406-174129303:- chr1:174128053:+ chr1:174181760,chr1:174181760 chr1:174138945,chr1:174138943 NA NA chr1:174150898,chr1:174150898 chr1:174108083,chr1:174108081 NA NA sense antisense unknown 5'UTR/splice-site exon duplication/5'-5' low none none none 11 5 8 180 27 ENST00000357444.10 unknown downstream upstream inconsistently_clipped(3),mismatches(2) CCTCCCCTCTCAGTTCCCTCCGCCCTCCTCGGGCTCCAGCGGTGGCGGAGCGAACGGGACCGGCCCGGCTTCAGAGCGCGAGGTGGAGGGTGGAACGCGGGCGCCTGAAGGAGTTGTTGTCTCGGCAGCGCCCGCGGAGACGTGAAGAG|GTGATTTCCCTCTTCAGTCTCCCCCGAGTCTCACAGAAGGAACTAACAAGGGAGCGCTTCACAAGCACACAGACACCTTCAAACAGGCGCAGAAGAGTACTTGGTGAAAAAGTATTCTTTCAGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21325 CARD18::CASP5 ENSG00000255501.3::ENSG00000137757.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary arriba TRUE TRUE FALSE NA TRUE 3647 FALSE NA CARD18 ENSG00000255501.3 protein_coding - - chr11:105137714-105531697:- chr11:105156109:- chr11:105008441-105402424:- chr11:105026836:- CASP5 ENSG00000137757.11 protein_coding - - chr11:104994235-105023168:- chr11:105002201:- chr11:104864962-104893895:- chr11:104872928:- chr11:105140314,chr11:105140318 chr11:105013351,chr11:105013352 NA NA chr11:105011041,chr11:105011045 chr11:104884078,chr11:104884079 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |Caspase_domain(100%) |CARD(0%),Peptidase_C14(100%) 0 1 1 1 12 ENST00000649856.1 ENST00000393141.6 upstream downstream none GTAAAACTCCACACAGATGTACCACACCTAACCTCCTCTGCATAGACCCCTACTTCCA|ATCTATCCAATAAAAAAGAGAGAGGACCGCAGACGCCTGGCTC...ACAAAGTTTGATCACCTGCCTGCAAGGAATGGGGCTCACTATGACATCGTGGGGATGAAAAGGCTGCTTCAAGGCCTGGGCTACACTGTGGTTGACGAAAA...TGCAGAGGTGGTGAGTGCTGAGGCTGAACATCTAACAGTTTTGAAGGTGTATGCAGAGGATTGTGATGTTTGGTTTATATTTAGGGGAAACAATGTTAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21350 DDX55::DNAH10 ENSG00000111364.16::ENSG00000197653.16 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1977 FALSE NA FALSE NA DDX55 ENSG00000111364.16 protein_coding + + chr12:123602077-123620943:+ chr12:123610128:+ chr12:124086624-124105490:+ chr12:124094675:+ DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123783107:+ chr12:124246735-124420267:+ chr12:124267654:+ chr12:123612248,chr12:123612249 chr12:123782507,chr12:123782505 NA NA chr12:124096795,chr12:124096796 chr12:124267054,chr12:124267052 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none DEAD/DEAH_box_helicase(100%)|AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) DEAD(100%),ResIII(100%)|AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(100%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 15 10 6 201 32 ENST00000238146.9 ENST00000409039.8 downstream upstream inconsistently_clipped(1),mismappers(1),mismatches(1) ACAGACTTCTGGACATGGGGTTTGAGGCAAG___CATCAACACCATTCTGGAGTTTTTGCCAAAGCAGAGGAGAACAGGCCTTTTCTCTGCCACTCAGACGCAGGAAGTGGAGAACCTGGTGAGAGCGGGCCTCCGGAACCCTGTCCGGGTCTCAGTGAAGGAGAAGGGCGTGGCAGCCAGCAGTGCCCAGAAGACCCCCTCCCGCCTGGAAAACTACTACATG|GTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAG___GGTAAAGGCCCTCTGGCTGAAATTGAATTCTG RLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYM|vrss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21351 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1978 TRUE 3650 TRUE 1374 DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123799371:+ chr12:124246735-124420267:+ chr12:124283918:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123704532:+ chr12:124155657-124192946:+ chr12:124189079:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynein_heavy_chain__N-terminal_region_1(80%)| DHC_N1(73%)| 9 11 10 28 22 ENST00000409039.8 ENST00000303372.7 downstream upstream mismatches(1) GAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAG___GTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATaAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAG|GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG___GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAA NHPPVAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQEVKQKYLEVGRTMKEYEDRKYkQWMEVTEQVLPALMKKSLLTK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21352 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3650 TRUE 1374 DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123796832:+ chr12:124246735-124420267:+ chr12:124281379:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123704532:+ chr12:124155657-124192946:+ chr12:124189079:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynein_heavy_chain__N-terminal_region_1(72%)| DHC_N1(57%)| 2 1 3 38 22 ENST00000409039.8 ENST00000303372.7 downstream upstream duplicates(1) ATCATTAATAAAATCTTTGTCCAGAAaCTTGAAAATCCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAG|GTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGG...GCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAG___GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAG...GTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG___ATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCC IINKIFVQkLENPPLYKNHPPVAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQE|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21353 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3650 TRUE 1374 DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123799371:+ chr12:124246735-124420267:+ chr12:124283918:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123706726:+ chr12:124155657-124192946:+ chr12:124191273:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Dynein_heavy_chain__N-terminal_region_1(80%)| DHC_N1(73%)| 1 0 4 28 51 ENST00000409039.8 ENST00000303372.7 downstream upstream none CCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGT...CGAGGACAGGAG___GTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATaAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAG|GTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAG___ATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCCGCAGCTTCTATATCCATGGACTCA RGQEVKQKYLEVGRTMKEYEDRKYkQWMEVTEQVLPALMKKSLLTK|vllselavpvwayl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21354 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3650 TRUE 1374 DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123790120:+ chr12:124246735-124420267:+ chr12:124274667:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123704531:+ chr12:124155657-124192946:+ chr12:124189078:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense out-of-frame CDS/splice-site intron duplication low none Dynein_heavy_chain__N-terminal_region_1(52%)| DHC_N1(28%)| 1 0 0 26 22 ENST00000409039.8 ENST00000303372.7 downstream upstream none GGCCTAGTCACCCCCATGGAAAACCTGACCTTTGACCCCTTCAGCATCAAGTCCTCCCAGTTCTGGAAATATGTGATGGATGAATTCAAGATTGAAGTTCT|GGTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGA GLVTPMENLTFDPFSIKSSQFWKYVMDEFKIEVl|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21355 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3650 TRUE 1374 DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123785936:+ chr12:124246735-124420267:+ chr12:124270483:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123707604:+ chr12:124155657-124192946:+ chr12:124192151:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Dynein_heavy_chain__N-terminal_region_1(29%)| DHC_N1(11%)| 0 1 0 19 67 ENST00000409039.8 ENST00000303372.7 downstream upstream none GGTCAACCTGCGGACTTTGTTCAA|GGGAGCTGCATTCTCAGTGTGTTGCTAAGGGCTTACTGTTGCTGTTGTTCCTCACATTGGCCTTGTTCCTCAGCAACCCCTGGACCAGAATATGCA VNLRTLFk|gaafsvcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21356 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1979 TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83161242:- chr6:83857043-83903655:- chr6:83870961:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Malic_enzyme__N-terminal_domain(23%)| malic(0%)| 6 11 10 235 25 ENST00000369705.4 ENST00000698599.1 upstream downstream none GGTATCTTCTCTTAATGGATCTCCAAGATAGAAATGAAAAACTCTTTTATAGAGTGCTGACATCTGACATTGAGAAATTCATGCCTATTGTTTATACTCCCACTGTGGGTCTGGCTTGCCAACAATATAGTTTGGTGTTTCGGAAGCCAAG|TAACTAACATCTTGACAAAGAGGATAAACTGATTTTGGTTCTTGTCATGGAAGATAAAAAGTCAGTATCATGAGCATACTATTTCATGTCCCTCCAAAAGCACCACAGAATAGTTATCACTTTTGTGAAG___AAAACCATATCCAAAAGATGA...___ATAATAAACCTAAATGTTTGACAAGAATACCTTCAACATCAGA YLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPs|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21357 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE TRUE 1980 TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83166466:- chr6:83857043-83903655:- chr6:83876185:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Malic_enzyme__N-terminal_domain(23%)| malic(0%)| 6 3 19 235 68 ENST00000369705.4 ENST00000512866.5 upstream downstream duplicates(1),mismatches(1) GTATCTTCTCTTAATGGATCTCCAAGATAGAAATGAAAAACTCTTTTATAGAGTGCTGACATCTGACATTGAGAAATTCATGCCTATTGTTTATACTCCCACTGTGGGTCTGGCTTGCCAACAATATAGTTTGGTGTTTCGGAAGCCAAG|GTTATAAAGCAGCAGAGACAACACACAACATCAACAATGCATTTGGCCCAGGAACTGCTAATGAACATACAGTGCCGTGATGGCTCAAGAAGTTTTGCAAAGGAGACTAGAGCCTTGAAGATGAGGAGTGCAGTGGCCAGTCATCGGAAATTGATAATGACCAATTGAGAACATCATCGAAGCTGATCCTCTTACAACTATAAGAGAGCTGCCCAAGAACTCAATGTTGACCATTTTATGGTCGTTCGGCATTTGAAGCAAATTGAAAAGGTGA YLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPr|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21358 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83166488:- chr6:83857043-83903655:- chr6:83876207:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through medium none Malic_enzyme__N-terminal_domain(23%)| malic(0%)| 2 0 19 235 35 ENST00000369705.4 ENST00000698524.1 upstream downstream duplicates(1),mismatches(1) CTGAACTCTGACTTTGACAG___GTATCTTCTCTTAATGGATCTCCAAGATAGAAATGAAAAACTCTTTTATAGAGTGCTGACATCTGACATTGAGAAATTCATGCCTATTGTTTATACTCCCACTGTGGGTCTGGCTTGCCAACAATATAGTTTGGTGTTTCGGAAGCCAAG|CGATTTTCTGAGTTCAAAATAGGTTATAAAGCAGCAGAGACAACACACAACATCAACAATGCATTTGGCCCAGGAACTGCTAATGAACATACAGTGCCGTGATGGCTCAAGAAGTTTTGCAAAGGAGACTAGAGCCTTGAAGATGAGGAGTGCAGTGGCCAGTCATCGGAAATTGATAATGACCAATTGAGAACATCATCGAAGCTGATCCTCTTACAACTATAAGAGAGCTGCCCAAGAACTCAATGTTGACCATTTTATGGTCGTTC LNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPs|dflssk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21359 CDK5RAP2::ENSG00000197585 ENSG00000136861.19::ENSG00000197585.10 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120487294:- chr9:123151153-123342448:- chr9:123249572:- ENSG00000197585 ENSG00000197585.10 lncRNA - - chr2:214241676-214684246:- chr2:214436317:- chr2:215106400-215548970:- chr2:215301041:- chr9:120481325,chr9:120481336,chr9:120481331 chr2:214436555,chr2:214436558,chr2:214436558 NA NA chr9:123243603,chr9:123243614,chr9:123243609 chr2:215301279,chr2:215301282,chr2:215301282 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Centrosomin_N-terminal_motif_1(100%)| Cnn_1N(100%)| 5 4 1 125 30 ENST00000349780.9 ENST00000412896.5 upstream downstream duplicates(1),mismatches(3) GCAAGTGATCAAACATCTAACAGAAAGTACCAATCAGAAGGACGTGTTGCTTCAG___AAATTCAATGAAAAAGATTTGGAAGTAATACAGCAGAACTGCTATTTAATGGCTGCAGAGGATCTTGAGCTCAGGAGTGAAGGCTTAATAACAGAAAAGTGCTCTTCTCAACAGCCACCAGGCAGCAAAACCATCTTCTCTAAG|ATGTACTGATTGCTCTGACCTC---TCGTAAACAGGCATTCTACTGGAACGTGTAAGATAATTTTTGCCATCTGTCATTTTCTTCTTCTTGAGAAAGGAGGAGAATTACTGAGAAACAAGAAAATGGTAAGTGGACATCTGTACCCTTTGTATGAACTCTTTTTCAAGCCAACTTAGACTCTAAATGGCATTTTTTTTT QVIKHLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIFSK|my* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21363 IQCH::SPESP1 ENSG00000103599.20::ENSG00000258484.4 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3652 TRUE 1376 IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67261394:+ chr15:67547124-67794598:+ chr15:67553732:+ SPESP1 ENSG00000258484.4 protein_coding + + chr15:68818221-68946811:+ chr15:68945599:+ chr15:69110560-69239150:+ chr15:69237938:+ chr15:67281933,chr15:67281931 chr15:68942312,chr15:68942307 NA NA chr15:67574271,chr15:67574269 chr15:69234651,chr15:69234646 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Sperm_equatorial_segment_protein_1(99%) |SPESP1(5%) 2 2 3 26 8 ENST00000335894.9 ENST00000310673.4 downstream upstream duplicates(1) CGCGCCTCCGCGGAGGTAGCCGTTCCCTGACCTAGCCATGGCACAGAACACTGAAAACCACGACCCTGTCGGATCCATCTTAATCCAG___ATCCATGAAGACCTTTATCAGTTAAAGGAGAAATTAACAAAATTCTCACCTGAGGAAAAAGGAGAGACTCTAGACATTCAGAGTCTTGAAACAGCAATCAAAAGGACTGAAGTGGGGTTAAGA|GCATAACTGTGACACCTGATGAAGAGCAAAACTTGAATCATTATATACAAGTTTTAGAGAACCTAGTACGAAGTGTTCCCTCTGGGGAGCCAGGTCGTGAGAAAAAATCTAACTCTCCAAAACATGTTTATTCTATAGCATCAAAGGGATCAAAATTTAAGGAGCTAGTTACACATGGAGACGCTTCAACTGAGAATGATGTTTTAACCAATCCTATCAGTGAAGAAACTACAACTTTC...GTCACCTGTCACCACTTTAGATAAGAGCACTGGCATTGaGATCTCTACAGAATCAGAAGATGTTCCTCAGCTCTCAGGTGAAACTGCGATAGAAAAACCCG MAQNTENHDPVGSILIQIHEDLYQLKEKLTKFSPEEKGETLDIQSLETAIKRTEVGLR|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21364 IQCH::SPESP1 ENSG00000103599.20::ENSG00000258484.4 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3652 TRUE 1376 IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67279512:+ chr15:67547124-67794598:+ chr15:67571850:+ SPESP1 ENSG00000258484.4 protein_coding + + chr15:68818221-68946811:+ chr15:68945599:+ chr15:69110560-69239150:+ chr15:69237938:+ chr15:67281933,chr15:67281931 chr15:68942312,chr15:68942307 NA NA chr15:67574271,chr15:67574269 chr15:69234651,chr15:69234646 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Sperm_equatorial_segment_protein_1(99%) |SPESP1(5%) 1 2 4 3 8 ENST00000335894.9 ENST00000310673.4 downstream upstream none GTTACTTCCAACTGTAATTGATCAGAAATCATTTATTTTCCCTCAGGAATCTGAGGGTACATTTTGGCAACCCCAAAGACAGCACAGTTCATCTCTGCCTGTCTTTCCAAGAGCAAAG|GCATAACTGTGACACCTGATGAAGAGCAAAACTTGAATCATTATATACAAGTTTTAGAGAACCTAGTACGAAGTGTTCCCTCTGGGGAGCCAGGTCGTGAGAAAAAATCTAACTCTCCAAAACATGTTTATTCTATAGCATCAAAGGGATCAAAATTTAAGGAGCTAGTTACACATGGAGACGCTTCAACTGAGAATGATGTTTTAACCAATCCTATCAGTGAAGAAACTACAACTTTCCCTACAGGAGGCTTCACACCGGAAATAGGAAAGAAAAAACACACGGAAAGTACCC LLPTVIDQKSFIFPQESEGTFWQPQRQHSSSLPVFPRAK|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21365 IQCH::SPESP1 ENSG00000103599.20::ENSG00000258484.4 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3652 TRUE 1376 IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67254947:+ chr15:67547124-67794598:+ chr15:67547285:+ SPESP1 ENSG00000258484.4 protein_coding + + chr15:68818221-68946811:+ chr15:68945599:+ chr15:69110560-69239150:+ chr15:69237938:+ chr15:67281933,chr15:67281931 chr15:68942312,chr15:68942307 NA NA chr15:67574271,chr15:67574269 chr15:69234651,chr15:69234646 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |Sperm_equatorial_segment_protein_1(99%) |SPESP1(5%) 0 1 0 29 8 ENST00000335894.9 ENST00000310673.4 downstream upstream none CGGAGGTAGCCGTTCCCTGACCTAGCCATGGCACAGAACACTGAAAACCACGACCCTGTCGGATCCATCTTAATCCAG|GCATAACTGTGACACCTGATGAA...TACAAGTTTTAGAGAACCTAGTACGAAGTGTTCCCTCTGGGGAGCCAGGTCGTGAGAAAAAATCTAACTCTCCAAAACATGTTTATTCTATAGCATCAAAG MAQNTENHDPVGSILIQ|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21367 SLC35F4::ARMH4 ENSG00000151812.15::ENSG00000139971.15 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57981913:- chr14:58030638-58448912:- chr14:58448631:- ARMH4 ENSG00000139971.15 protein_coding - - chr14:57999735-58298139:- chr14:58012150:- chr14:58466453-58764857:- chr14:58478868:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 2 4 1 58 113 ENST00000556568.1 ENST00000267485.7 upstream downstream none AATTAGGATTCAAAAAAGACTCAATGCGG___GGGGTGAGGAGCCGACTGGAAGCATCACTTTCTGGGATGTCAGAGTCTCCTTGGAAGAGTCCTAATTAAGGACTCAGAATGATTGACAGGTGGTGGAAGCTCAAGAAAGCACACTTGATATGCAGCAGAAGACAGTCTGTGAGTTGCAAAAAACCTGGCAATTGGAGACCTTGAAAAACTTTT|TGAGAAGCTGGATGGAAAAATTAAAAGACAAG___GCTGGTTACATGTCTGGGATGCTGGTGCCTGTAGGGGTTGGGATAGCTGGAGCCTTGTTCATCTTGGGAGCCCTCTACAGCATTAAGGTTATGAATCGCCGAAGGAGAAATGGCTTCAAAAGGCATAAAAGAAAG___CAGAGAGAATTCAACAGCATGCAAGATCGAGTAATGCTCTTAGCCGACAGCTCTGAAGATGAATTTTGAATTGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21369 MEIS2::RIMS1 ENSG00000134138.22::ENSG00000079841.20 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3653 TRUE 1377 MEIS2 ENSG00000134138.22 protein_coding - - chr15:36889204-37101299:- chr15:37036814:- chr15:37181405-37393500:- chr15:37329015:- RIMS1 ENSG00000079841.20 protein_coding + + chr6:71886550-72403150:+ chr6:71968983:+ chr6:72596253-73112852:+ chr6:72678686:+ chr15:37003944,chr15:37003947 chr6:71963139,chr6:71963136 NA NA chr15:37296145,chr15:37296148 chr6:72672842,chr6:72672839 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Homeobox_KN_domain(17%),N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|C2_domain(100%),FYVE-type_zinc_finger(100%),PDZ_domain(100%) Homeobox_KN(0%),Homeodomain(0%),Meis_PKNOX_N(100%)|C2(100%),FYVE_2(100%),PDZ(100%) 1 0 3 33 1 ENST00000338564.9 ENST00000697193.1 upstream upstream mismatches(1) GCAGTGAGCAAG___GGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTCACA|GTGTGTTGTCAGGGACATGGCGAAGCCTGCTGCCTGCAAAACACCAAGAAATGCTGAAAACCAGCCCCACCAACCTTCACC___GAGATTGCATCAACAGTTTGAAAGCTATAAGGAAaAAGTGAGA SEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT|vccqghgeacclqntkkc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21370 MEIS2::RIMS1 ENSG00000134138.22::ENSG00000079841.20 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3653 TRUE 1377 MEIS2 ENSG00000134138.22 protein_coding - - chr15:36889204-37101299:- chr15:37036814:- chr15:37181405-37393500:- chr15:37329015:- RIMS1 ENSG00000079841.20 protein_coding + + chr6:71886550-72403150:+ chr6:72096949:+ chr6:72596253-73112852:+ chr6:72806652:+ chr15:37003944,chr15:37003947 chr6:71963139,chr6:71963136 NA NA chr15:37296145,chr15:37296148 chr6:72672842,chr6:72672839 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Homeobox_KN_domain(17%),N-terminal_of_Homeobox_Meis_and_PKNOX1(100%)|C2_domain(100%),FYVE-type_zinc_finger(100%),PDZ_domain(100%) Homeobox_KN(0%),Homeodomain(0%),Meis_PKNOX_N(100%)|C2(100%),FYVE_2(100%),PDZ(100%) 2 0 1 33 5 ENST00000338564.9 ENST00000697193.1 upstream upstream none GCAGTGAGCAAG___GGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTCACA|GAGATTGCATCAACAGTTTGAAAGCTATAAGGAACAAGTGAGAAAAATAGGGGAAGAAGCGCGGCGTTACCAGGGCGAGCACAAAGACGATGCTCCGAC SEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT|eiastv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21373 CDK5RAP2::VWC2L ENSG00000136861.19::ENSG00000174453.10 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3655 TRUE 1378 CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120491307:- chr9:123151153-123342448:- chr9:123253585:- VWC2L ENSG00000174453.10 protein_coding + + chr2:214411054-214578976:+ chr2:214436629:+ chr2:215275778-215443700:+ chr2:215301353:+ chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325 chr2:214436506,chr2:214436498,chr2:214436485,chr2:214436484,chr2:214436540,chr2:214436539,chr2:214436527,chr2:214436518 NA NA chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603 chr2:215301230,chr2:215301222,chr2:215301209,chr2:215301208,chr2:215301264,chr2:215301263,chr2:215301251,chr2:215301242 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Centrosomin_N-terminal_motif_1(100%)| Cnn_1N(100%)| 1 2 0 153 30 ENST00000349780.9 ENST00000312504.10 upstream upstream mismatches(1) CTGGAGGAAGCCCATCGAGAGAAGAGCAAAGGAGACTGCACCATCCGT___GATCTTAGAAATGAAGTTGAAAAATTACGCAATGAAGTGAATGAAAGAGAGAAAGCAATGGAAAATCGTTACAAGAGT...AAGCAATAAAAAATTGCACAATCAAGAGCAAGTGATCAAACATCTAACAGAAAGTACCAATCAGAAGGACGTGTTGCTTCAG|CCCTCTCCATGTGAATGGTGTCGCTGTGAGCCCAGCAATGAAGTTCACTGTGTTGTAGCgGACTGCGCAGTTCCTGAGTGTGTCAcCCCAG...CTATGAACCAGAACAATGTTGTCCTGTCTGCAAAAATG___ATGTGATGACTCCTTTGCGAATGaGGAAAGATGACAATGACAAGGAACCCAGGAGGAAGTCTG SNKKLHNQEQVIKHLTESTNQKDVLLQ|PSPCEWCRCEPSNEVHCVVADCAVPECVtP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21374 CDK5RAP2::VWC2L ENSG00000136861.19::ENSG00000174453.10 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3655 TRUE 1378 CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120487294:- chr9:123151153-123342448:- chr9:123249572:- VWC2L ENSG00000174453.10 protein_coding + + chr2:214411054-214578976:+ chr2:214436629:+ chr2:215275778-215443700:+ chr2:215301353:+ chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325,chr9:120481325 chr2:214436506,chr2:214436498,chr2:214436485,chr2:214436484,chr2:214436540,chr2:214436539,chr2:214436527,chr2:214436518 NA NA chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603,chr9:123243603 chr2:215301230,chr2:215301222,chr2:215301209,chr2:215301208,chr2:215301264,chr2:215301263,chr2:215301251,chr2:215301242 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Centrosomin_N-terminal_motif_1(100%)| Cnn_1N(100%)| 3 0 0 125 30 ENST00000349780.9 ENST00000312504.10 upstream upstream mismatches(1) ATTTAATGGCTGCAGAGGATCTTGAGCTCAGGAGTGAAGGCTTAATAACAGAAAAGTGCTCTTCTCAACAGCCACCAGGCAGCAAAACCATCTTCTCTAAG|CCCTCTCCATGTGAATGGTGTCGCTGTGAGCCCAGCAATGAAGTTCACTGTGTTGTAGCAGACTGCGCAGTTCCTGAGTGTGTCAcCCCAG LMAAEDLELRSEGLITEKCSSQQPPGSKTIFSK|PSPCEWCRCEPSNEVHCVVADCAVPECVtP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21381 GRAMD1C::CCDC191 ENSG00000178075.20::ENSG00000163617.11 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GRAMD1C ENSG00000178075.20 protein_coding + + chr3:113828182-113947174:+ chr3:113915838:+ chr3:113547029-113666021:+ chr3:113634685:+ CCDC191 ENSG00000163617.11 protein_coding - + chr3:113964137-114056594:- chr3:113978320:+ chr3:113682984-113775441:- chr3:113697167:+ chr3:113929955,chr3:113929956 chr3:113964721,chr3:113964719 NA NA chr3:113648802,chr3:113648803 chr3:113683568,chr3:113683566 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' medium none GRAM_domain(100%),VAD1_Analog_of_StAR-related_lipid_transfer_domain(22%)| GRAM(100%),VASt(0%)| 3 6 10 34 28 ENST00000358160.9 unknown downstream upstream none AAAATGTTCCTGAGAAAGATCTTCATGGAAGACTTTTTATCAACCGTATTTTTCATATCAGTGCTGACAGAATGTTTGAATTGCTCTTTACCAGTTCACGCTTTATGCAGAAATTTGCCAGTTCTAGAAATATAATAG|ATCAATCACGTACTGGGGATGAAGACAGAAATAAAAGTGAGACAAAAAATATCAGTTGACAAAGAATTAGAGCAAATAAACAGCACAAAAGACAGAAATGAAACAAAAGAAACAAATGACACTAGAGACATACAAAGAAAAGGATAACCTGGAAGCCAAGAAAATATCCTCTATAATGTATCCTAAAAATGGTAAGAGAACACATGAATAGAA NVPEKDLHGRLFINRIFHISADRMFELLFTSSRFMQKFASSRNII|dqsrtgdedrnksetknis* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21395 SNRNP35::C12orf75 ENSG00000184209.15::ENSG00000235162.9 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNRNP35 ENSG00000184209.15 protein_coding + + chr12:123458088-123473154:+ chr12:123458216:+ chr12:123942635-123957701:+ chr12:123942763:+ C12orf75 ENSG00000235162.9 protein_coding + - chr12:105235290-105396097:+ chr12:105277361:- chr12:105629068-105789875:+ chr12:105671139:- chr12:123467741 chr12:105288292 NA NA chr12:123952288 chr12:105682070 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 0 2 0 161 2 ENST00000527158.2 unknown downstream downstream none GTCGCCTGCAGCTGCTCGCCTGTCTCCGTCGGAAGGGAGCCCAAGCTTTGCAGAG|ATATGAGGTCTCATTATGTTGCCCAGGCTGGTCTCAGACTCCTGACCTCAAGCAGTCCTCCAGCCTCAGCCTCCCAAAGGCCTGTGATTACAGGTGTGAACCACTGCACCCGGCCCTTGGTGGTATGTTTAATCTCCTCTGGGATCACTGAGTGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21397 DOP1A::ME1 ENSG00000083097.15::ENSG00000065833.9 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOP1A ENSG00000083097.15 protein_coding + + chr6:83067666-83171350:+ chr6:83162919:+ chr6:83777385-83881069:+ chr6:83872638:+ ME1 ENSG00000065833.9 protein_coding - + chr6:83210402-83431051:- chr6:83392131:+ chr6:83920121-84140770:- chr6:84101850:+ chr6:83167241,chr6:83167242 chr6:83389946,chr6:83389944 NA NA chr6:83876960,chr6:83876961 chr6:84099665,chr6:84099663 NA NA sense antisense out-of-frame CDS intron deletion/read-through/5'-5' low none Dopey__N-terminal(100%)| Dopey_N(100%)| 1 2 8 43 21 ENST00000237163.9 unknown downstream upstream none GCAGGAACTCACTGCTGATGAAGATATTTCACG___GACTTCAGGGCCCTCTGTGGCTGGgCTGGAGACAACGTACACAGGAGGTAATGGCTTtTCTACTTCAT...CTTTATTCCAGAAGCCTCAGATGATTCAGGTTTGGAAGTCAGAAGGCAGGGTATACATCAACGAGAATTTAAACCTTACGTGGTACGACTAGCAAAACTTCTTCGGAAAAGAGCAAAG|ACAGCTGCATCTTCTCGTGCATTGCCAGCTGCATCCCTGAGACACCATGGTGAAGGTGAAGGCTGGAGTCAACAGATTTGGTTGTATTGGCTGCCTGGTCACCAGGGCTGCTTTAAACTCTGGTTAAGTCGATATTGTCGCCATCAATGACCCCTTCATTGACCTCAACAACACTGTCTACATGTTCCAGTATAATTCTGCCCATGGCAAATTCCATGGCACCGTCAAG FIPEASDDSGLEVRRQGIHQREFKPYVVRLAKLLRKRAK|taassralpaaslrhhgegegwsqqiwlywlpghqgcfklwlsrycrhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21412 ENSG00000197585::VWC2L ENSG00000197585.10::ENSG00000174453.10 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000197585 ENSG00000197585.10 lncRNA - - chr2:214241676-214684246:- chr2:214436192:- chr2:215106400-215548970:- chr2:215300916:- VWC2L ENSG00000174453.10 protein_coding + + chr2:214411054-214578976:+ chr2:214414114:+ chr2:215275778-215443700:+ chr2:215278838:+ chr2:214416301,chr2:214416305 chr2:214411611,chr2:214411607 NA NA chr2:215281025,chr2:215281029 chr2:215276335,chr2:215276331 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion low none none none 1 2 0 20 3 ENST00000412896.5 ENST00000312504.10 upstream upstream none CCTCTCGTAAACAGGCATTCTACTGGAACGTGTAAGATAATTTTTGCCATCTGTCATTTTCTTCTTCTTGAGAAAGGAGGAGAATTACTGAGAAACAAGAAAATG|CCTACCCCTCTTGTATTCCCATGGAAGGAGCTGAGTATATTTAATATTAGGAGCACATCCAGAAGTCT...GCTCTTCATATTCATGAAGCTTGCATACTTCTGTTGGTCATCCCTGGATTGGTCACCTCTGCTGCTATCAGTCATGAAGACTATCCTGCTGATGAAGGTGA...AAGTGGAACACAATGGATGCTGTCCTGAGTGCAAAGAAGTAAAAAACTTCTGTGAATATCACGGGAAAAATTACAAAATCTTGGAGGAATTTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21423 USP6NL::UPF2 ENSG00000148429.15::ENSG00000151461.20 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1984 TRUE 3661 TRUE 1379 USP6NL ENSG00000148429.15 protein_coding - - chr10:11460510-11611666:- chr10:11597631:- chr10:11502509-11653665:- chr10:11639630:- UPF2 ENSG00000151461.20 protein_coding - - chr10:11920022-12043170:- chr10:11956523:- chr10:11962021-12085169:- chr10:11998522:- chr10:11537050,chr10:11537052 chr10:11957129,chr10:11957128 NA NA chr10:11579049,chr10:11579051 chr10:11999128,chr10:11999127 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |MIF4G_domain(31%),Up-frameshift_suppressor_2_(100%) |MIF4G(6%),Upf2(100%) 42 41 91 161 190 ENST00000609104.6 ENST00000397053.6 upstream downstream duplicates(13),mismatches(7) ATGGGGCGGAGGGCACTGCGGTAGCCGCCGCCGCCGCCGCGCCGCGCCGCGCCGGATCTGCTCGGCCGCCCGGGACCGCCAGCTCTGTCCGCTGCCCACAGCCTAGCAGTCGGGACCGTACTGAG___GACATGTATTCCTCTGAGAAACCTTGGACAGCAGATTTTGGTTTAATATCTGATTGGGACAACATTCAGACCCATTTCCAGTCATGA|GTTTTGAGACAGATGCGAAAGCTGCCCTGGCAGGACCAAGAAGTGAAAGACTATGTTATTTGTTGTATGATAAACATCTGGAATGTGAAATATAATAGTATTCATTGTGTAGCCAACCTCTTAGCAGGACTAGTGCTCTACCAAGAGGATGTTGGGATCCACGTTGTGGATGGAGTGTTAGAAGATATTCGATTAGGAATGGAG___GTTAATCAACCTAAATTTAATCAGAGGCGCATCAGCAGTGCCAAGTTCTTAGGAGAACTTTACA M|sfetdakaalagprserlcyllydkhlecei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 11532831|11653442,11523769 FALSE|FALSE,FALSE 11973781|12056183,11985167 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21424 USP6NL::UPF2 ENSG00000148429.15::ENSG00000151461.20 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3661 TRUE 1379 USP6NL ENSG00000148429.15 protein_coding - - chr10:11460510-11611666:- chr10:11611443:- chr10:11502509-11653665:- chr10:11653442:- UPF2 ENSG00000151461.20 protein_coding - - chr10:11920022-12043170:- chr10:11956523:- chr10:11962021-12085169:- chr10:11998522:- chr10:11537050,chr10:11537052 chr10:11957129,chr10:11957128 NA NA chr10:11579049,chr10:11579051 chr10:11999128,chr10:11999127 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |MIF4G_domain(31%),Up-frameshift_suppressor_2_(100%) |MIF4G(6%),Upf2(100%) 1 4 57 267 190 ENST00000609104.6 ENST00000397053.6 upstream downstream duplicates(3),mismatches(4) CTTGGAAGGGAAACAATGGGGCGGAGGGCACTGCGGTAGCCGCCGCCGCCGCCGCGCCGCGCCGCGCCGGATCTGCTCGGCCGCCCGGGACCGCCAGCTCTGTCCGCTGCCCACAGCCTAGCAGTCGGGACCGTACTGAG|GTTTTGAGACAGATGCGAAAGCTGCCCTGGCAGGACCAAGAAGTGAAAGACTATGTTATTTGTTGTATGATAAACATCTGGAATGTGAAATATAATAGTATTCATTGTGTAGCCAACCTCTTAGCAGGACTAGTGCTCTACCAAGAGGATGTTGGGATCCACGTTGTGGATGGAGTGTTAGAAGATATTCGATTAGGAATGGAG___GTTAATCAACCTAAATTTAATCAGAGGCGCATCAGCAGTGCCAAGTTCTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 11532831|11653442,11523769 FALSE|TRUE,FALSE 11973781|12056183,11985167 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21425 USP6NL::UPF2 ENSG00000148429.15::ENSG00000151461.20 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1985 TRUE 3661 TRUE 1379 USP6NL ENSG00000148429.15 protein_coding - - chr10:11460510-11611666:- chr10:11597631:- chr10:11502509-11653665:- chr10:11639630:- UPF2 ENSG00000151461.20 protein_coding - - chr10:11920022-12043170:- chr10:11948508:- chr10:11962021-12085169:- chr10:11990507:- chr10:11537050,chr10:11537052 chr10:11957129,chr10:11957128 NA NA chr10:11579049,chr10:11579051 chr10:11999128,chr10:11999127 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Up-frameshift_suppressor_2_(100%) |Upf2(100%) 3 7 8 161 521 ENST00000609104.6 ENST00000397053.6 upstream downstream duplicates(1) CACTGCGGTAGCCGCCGCCGCCGCCGCGCCGCGCCGCGCCGGATCTGCTCGGCCGCCCGGGACCGCCAGCTCTGTCCGCTGCCCACAGCCTAGCAGTCGGGACCGTACTGAG___GACATGTATTCCTCTGAGAAACCTTGGACAGCAGATTTTGGTTTAATATCTGATTGGGACAACATTCAGACCCATTTCCAGTCATGA|GCCTAGTAAATGACAAAGACTCAAAAGATTCTATGACAGAAGGAGAAAATCTTGAAGAGGATGAAGAAGAAGAAGAAGGTGGGGCTGAAACAGAAGAACAATCTGGAAATGAAAGTGAAGTAAATGAGCCAGAAGAAGAG___GAGGGTTCTGATAATGATGATGATGAGGGAGAAGAAGAGG...AATGCCGTTTGTCATGTTAACAAGAAAAGGCAATAAACAGCAG___TTTAAGATCCTTAATGTACCCATGTCCTCTCAACTTGCTGCAAATCACTGGAACCAGCA M|sLVNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 11532831|11653442,11523769 FALSE|FALSE,FALSE 11973781|12056183,11985167 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21428 ATP2C1::LINC01208 ENSG00000017260.20::ENSG00000223715.3 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3663 TRUE 1380 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130932138:+ chr3:130569439-130735556:+ chr3:130650982:+ LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176537730:- chr3:176133227-176585626:- chr3:176255518:- chr3:130934377,chr3:130934376 chr3:176549160,chr3:176549161 NA NA chr3:130653221,chr3:130653220 chr3:176266948,chr3:176266949 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Cation_transporter/ATPase__N-terminus(76%)| Cation_ATPase_N(39%)| 4 4 31 350 8 ENST00000508532.5 unknown downstream downstream duplicates(1),mismappers(1),mismatches(3) GCTCGCTTCTTCTCACGCCGGGAGCAGGCTCCCGCCTCGCACCGCTGCCCCGCGAGCAGCTCCTCTTCTCCCGAGGCGCGCGGGGCGCCCCCGCGAGCCCCG...TGTCCTCCTCCTCTCCTCTCTATTCCCAGTGTGGCCGTGGCTGACACTAAAGACTTTGTAGCCATCAACCCGAGTGCAGTTTCGATGGAAAATGAAG___GTTGCACGTTTTCAAAAAATACCTAATGGTGAAAATGAGACAATGATTCCTGTATTGACATCAAAAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGCATTCTCCAA___GCTGATCTTCAGAATGGTCTAAACAAATGTGAAGTTAGTCATAGGCGAGCCTTTCATGGCTGGAATGAGTTTGATATTAGTGAAGATGAGCCACTGTGGAAGAAGTATATTTCTCAG|GTAAATCAGGGATTTCCTCTTGGTTTGGATCCTTTGCTG___CCACAGGTCACATGGCATTCCCC MKVARFQKIPNGENETMIPVLTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQ|vnqgfplgldpllpqvtwhs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21429 ATP2C1::LINC01208 ENSG00000017260.20::ENSG00000223715.3 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3663 TRUE 1380 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130932138:+ chr3:130569439-130735556:+ chr3:130650982:+ LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176491407:- chr3:176133227-176585626:- chr3:176209195:- chr3:130934377,chr3:130934376 chr3:176549160,chr3:176549161 NA NA chr3:130653221,chr3:130653220 chr3:176266948,chr3:176266949 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Cation_transporter/ATPase__N-terminus(76%)| Cation_ATPase_N(39%)| 3 3 27 350 16 ENST00000513801.5 ENST00000652470.1 downstream downstream duplicates(1),mismappers(1),mismatches(1) AGGCTCCCGCCTCGCACCGCTGCCCCGCGAGCAGCTCCTCTTCTCCCGAGGCGCGCGGGGCGCCCCCGCGAGCCCCGCGGCTGAGACCCCGCAGCCTGGAGGAGGGCTGTCCGGGGCTTTGG___GTTGCACGTTTTCAAAAAATACCT...GAGACAATGATTCCTGTATTGACATCAAAAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGCATTCTCCAA___GCTGATCTTCAGAATGGTCTAAACAAATGTGAAGTTAGTCATAGGCGAGCCTTTCATGGCTGGAATGAGTTTGATATTAGTGAAGATGAGCCACTGTGGAAGAAGTATATTTCTCAG|TTTTCTTCTTCATGCACAGACAGGCACCAATTTGAAGCTTAATGACAGCAGAAACAGAGAACAACTACT___AACTAAGAGTATT MIPVLTSKKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQ|fsssctdrhqfea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21430 ATP2C1::LINC01208 ENSG00000017260.20::ENSG00000223715.3 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3663 TRUE 1380 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130932138:+ chr3:130569439-130735556:+ chr3:130650982:+ LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:130934377,chr3:130934376 chr3:176549160,chr3:176549161 NA NA chr3:130653221,chr3:130653220 chr3:176266948,chr3:176266949 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Cation_transporter/ATPase__N-terminus(76%)| Cation_ATPase_N(39%)| 7 10 14 350 29 ENST00000508532.5 ENST00000652470.1 downstream downstream duplicates(1) GCAGGCTCCCGCCTCGCACCGCTGCCCCGCGAGCAGCTCCTCTTCTCCCGAGGCGCGCGGGGCGCCCCCGCGAGCCCCGCGGCTGAGACCCCGCAGCCTGGA...GGGGGCTTCTCTTCCTTGTCCTCCTCCTCTCCTCTCTATTCCCAGTGTGGCCGTGGCTGACACTAAAGACTTTGTAGCCATCAACCCGAGTGCAGTTTCGATGGAAAATGAAG___GTTGCACGTTTTCAAAAAATACCTAATGGTGAAAATGA...AAAAAAAGCAAGTGAATTACCAGTCAGTGAAGTTGCAAGCATTCTCCAA___GCTGATCTTCAGAATGGTCTAAACAAATGTGAAGTTAGTCATAGGCGAGCCTTTCATGGCTGGAATGAGTTTGATATTAGTGAAGATGAGCCACTGTGGAAGAAGTATATTTCTCAG|AACTAAGAGTATTTTTAATACAGTGCTGAAGAGCCAGCTGAACTGGCTTTGTAGATCATCCTCAG___GAAACTGACGGTCAGGCCTCCTGTATGACACCAGGGAGCTGAGGCTTTATGGATTGGATCACTGCACCCAATGAGACACACCTGCTGCCTGTCGAACCAACCCTCTTCCTAGCTCCTCCATAATTCCTTTTTTTCCTGCACGTGATTA...ACCAGCTCCTCTTCCTCTCCCCCGGCCCTGGTTCTTCTTCCAAGCTATTAGGTGAAAGCAAAAGTAATTGCGGTTTTTGCATTGTTGAAATTTGCCATTTGA KKASELPVSEVASILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQ|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21432 STX7::ENSG00000258342 ENSG00000079950.14::ENSG00000258342.4 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STX7 ENSG00000079950.14 protein_coding - - chr6:132445867-132513198:- chr6:132503446:- chr6:132767006-132834337:- chr6:132824585:- ENSG00000258342 ENSG00000258342.4 lncRNA + - chr14:35897884-36068321:+ chr14:36023201:- chr14:36367090-36537527:+ chr14:36492407:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Syntaxin-like_protein(11%)| Syntaxin(0%),Syntaxin_2(0%)| 15 4 4 245 6 ENST00000367941.7 unknown upstream downstream duplicates(1),mismatches(1) GAGAATTGCAGCTGAGGGCTCCGGGGTAGGTGGGTGACGGCGGTCGGAGGTGTAGGAGGGAGCCGTGGAGGTCCAG___GTGACTGCTTAGAAAACTGCACAGCATCTGATGAAATTAGCGAATAAGAACATCAACCATGTCTTACACTCCAGGAGTTGGTGGTGACCCCGCCCAGTTGGCCCAGAGGATCTCTTCTAACATCCAGAAGATCACACAGTGTT|CTAAACCCTTGAAAACTGGGAGACAGACAAAGGAACCCAAACGTGAAGAGCATTCATTAAAAGATGTAAATAGCCAGGATCCGTGCTGTTTTGTTTCAATCTTCTTTATACTGCTGAAAACAGGAAAGCCTCCTGTCACGCAGACTCCGGGATTCTCAGAGCCCAATAAAG___GTTTAGAAGAGGCAGCACCCCTCTTGCCTGGGATTGGGATAATGCAGCTGAGACGGC MSYTPGVGGDPAQLAQRISSNIQKITQC|skplktgrqtkepkreehslkdvnsqdpccfvsiffillktgkppvtqtpgfsepnkgleeaapllpgigimqlrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21433 STXBP5::STXBP5-AS1 ENSG00000164506.16::ENSG00000233452.9 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STXBP5 ENSG00000164506.16 protein_coding + + chr6:147204180-147391010:+ chr6:147353373:+ chr6:147525316-147712146:+ chr6:147674509:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - + chr6:146824539-147204614:- chr6:146925972:+ chr6:147145675-147525750:- chr6:147247108:+ chr6:147355546,chr6:147355544 chr6:146883876,chr6:146883871 NA NA chr6:147676682,chr6:147676680 chr6:147205012,chr6:147205007 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none LLGL2(100%),WD_domain__G-beta_repeat(100%)| LLGL(100%),WD40(100%)| 2 1 6 44 3 ENST00000706850.1 unknown downstream upstream duplicates(2),mismatches(1) ATCGGAGAGAACCCCGATCTCCTCGTAAATCTCGACAGCCTTCAGGAG___CCGGTCTGTGTGATATTAGTGAAGGGACTGTTGTTCCAGAGGATCGCTGCAAATCTCCAACCTCTG___CAAAGATGTCAAGGAAGTTAAGCTTACCTACTGACCTAAAGCCTGATTTAG|GAATGACAAAAGCTGAAAGAAATGTGTGACCATGAGGACACTGTAAACCATGAATGACATGCTGAAACCGGAAACCCAGGATGATCATAACTGAGAGTGGCGCTA...TAAACAAAATTATGGGAGGCCATTATTTTGGACTGAGCTCATGCACTAGGCCCCAACAAACCAAACTAAAATAGAGTCACTCATGCTAAATATGACATAGTCAAGCTAAG RREPRSPRKSRQPSGAGLCDISEGTVVPEDRCKSPTSAKMSRKLSLPTDLKPDL|gmtkaernv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21434 KDM6A::ENSG00000283380 ENSG00000147050.18::ENSG00000283380.1 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3664 FALSE NA KDM6A ENSG00000147050.18 protein_coding + + chrX:44873188-45112779:+ chrX:44873987:+ chrX:44732434-44972024:+ chrX:44733233:+ ENSG00000283380 ENSG00000283380.1 lncRNA - - chrX:20769718-21374265:- chrX:21082964:- chrX:20787836-21392383:- chrX:21101082:- chrX:44961295 chrX:21132502 NA NA chrX:44820540 chrX:21150620 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 4 2 77 5 ENST00000611820.5 ENST00000637444.1 downstream downstream mismatches(2) CGAGCGGCGAGAGCGAGGAGGCGTCCCCCAGCCTGACAGCCGAGGAGAGGGAGGCGCTCGGCGGACTGGACAG___CCGCCTCTTTGGGTTCGTGAGATTTCATGAAGATGGCGCCAGGACGAAGGCCCTACTGGGCAAG|ACAAAAAAAAGTTGCTGATTCCAGTCTAGAGGAAACAGTAAGGAAGAGAAAAGAGAAATTCTCATTATAGCCATGGCAAAGGAAGGGACATTTTTATGGACTACATCTCTGCCTGGATGGCTGTCTCTAACTGGATTTTGCCAATATATGCTGA___AATGTAAGCTTCATGAAGTCAAGTTGTTTGTCTTGTACACTGCTGTATTTCCAGTGCCTTAAACAGTGACAGG...TAAGATGTGACTTGCTCCTCCaTGCCTcCCACCATGATCATGAGGCCTCCCCAACCATGTGGAACT___GGGGAGATATGAAATTATCCAGGAATGGCAATTTG SGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGARTKALLGK|tkksc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific demethylase 6A, UTX 1 Yes renal cell carcinoma, bladder carcinoma, oesophageal SCC, MM, medulloblastoma, T-ALL, other tumour types epithelial, leukaemia_lymphoma oncogene, TSG large_deletion, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 21438 FAM120B::PACRG ENSG00000112584.14::ENSG00000112530.13 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM120B ENSG00000112584.14 protein_coding + + chr6:170290703-170407067:+ chr6:170348323:+ chr6:170599791-170716155:+ chr6:170657411:+ PACRG ENSG00000112530.13 protein_coding + - chr6:162727132-163315500:+ chr6:162732312:- chr6:163148164-163736532:+ chr6:163153344:- chr6:170352497,chr6:170352498 chr6:162754768,chr6:162754767 NA NA chr6:170661585,chr6:170661586 chr6:163175800,chr6:163175799 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 1 1 0 24 12 ENST00000630384.2 unknown downstream downstream duplicates(1) GGCTGAACCAAGAGCCAGAAATACAGGTTCGGCGCTTGGACACACTCCTAGCCTGTTTCAATCTTTCCTCCTCAAGAGAAGAGCTGCAGGCTGTCGAAAGCCCATTTCAAGCTTTGTGCTGCCTCTTGATCTACCTCTTTGTCCAG|ATTGCTCCATACCCATTTTTCTCTCCTCCACCTGAAGTAGGTGTTGGAGATGATGCCCTTTTGGAACTACATAGCTTCCTTCATCCTTTTCCTGAGGAGACAGGT LNQEPEIQVRRLDTLLACFNLSSSREELQAVESPFQALCCLLIYLFVQ|iapypffspppevgvgddallelhsflhpfpeet NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4644 chr6:170330761-170330844:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21443 MCF2L::STARD13 ENSG00000126217.22::ENSG00000133121.21 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MCF2L ENSG00000126217.22 protein_coding + + chr13:112894378-113099742:+ chr13:112969458:+ chr13:113548692-113754056:+ chr13:113623772:+ STARD13 ENSG00000133121.21 protein_coding - - chr13:33103137-33350630:- chr13:33142373:- chr13:33677274-33924767:- chr13:33716510:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |RhoGAP_domain(100%),SAM_domain_(Sterile_alpha_motif)(20%),START_domain(100%) |RhoGAP(100%),SAM_2(0%),START(100%) 0 1 1 67 5 ENST00000535094.7 ENST00000567873.2 downstream downstream none CAGAGATTAAATGCGGTTTCCAAGCACACGG|ACGACTAAATACGTTGAACAAGTGTGCCTCAATGAAACTTGATGTGAACTTCCAAAGGAAAAAG___GGTGAC...GGCCTGGTGATCAGTGGGCCCATGTTGCAGCAGGAGCCAGAGTCCTTTAAGGCTATGCAGTGCATCCAAATACCAAATGGAGATCTCCAGAATTCGCCGC QRLNAVSKHT|dd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21445 TRAPPC9::AGO2 ENSG00000167632.18::ENSG00000123908.12 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140397620:- chr8:140739968-141468678:- chr8:141407719:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(24%)|Argonaute_linker_1_domain(100%),Argonaute_linker_2_domain_(100%),Mid_domain_of_argonaute(100%),N-terminal_domain_of_argonaute(100%),PAZ_domain(100%),Piwi_domain(100%) TRAPPC9-Trs120(9%)|ArgoL1(100%),ArgoL2(100%),ArgoMid(100%),ArgoN(100%),PAZ(100%),Piwi(100%) 1 0 1 213 85 ENST00000648948.2 ENST00000220592.10 upstream downstream none AGTTGGAAGCGTGCATCAAGGCTGTACGTGTCCTTGCAATTCAGAAACGGAGCATGGAAGCATCAGAATTTCTTCAGAATGCAGTTTACATTAACCTTCGACAG|CACTTGCACCTCCTGCGCCGCCGCCCCCCATCCAAGGATATGCCTTCAAGCCTCCACCTAGACCCGACTTTGGGACCTCCGGGAGAACAATCAAATTACAGGCCAATTTCTTCGAAATGGACATCCCCAAAATTGACATCTATCATTATGAATTGGATATCAAGCCAGAGAAGTGCCCGAGG LEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQ|hlhllrrrppskdmpsslhldptlgppgeqsnyrpisskwtspkltsiimnwissqrsar NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 140456799|140457639 FALSE|FALSE 140541358|140541358 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21446 LAPTM4B::MTDH ENSG00000104341.17::ENSG00000147649.10 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3666 TRUE 1381 LAPTM4B ENSG00000104341.17 protein_coding + + chr8:97775057-97853013:+ chr8:97819238:+ chr8:98787285-98865241:+ chr8:98831466:+ MTDH ENSG00000147649.10 protein_coding + + chr8:97644184-97730260:+ chr8:97689038:+ chr8:98656412-98742488:+ chr8:98701266:+ chr8:97820636 chr8:97688760 NA NA chr8:98832864 chr8:98700988 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Golgi_4-transmembrane_spanning_transporter(23%)|Lysine-rich_CEACAM1_co-isolated_protein_family(41%) Mtp(0%)|LYRIC(28%) 1 0 1 329 288 ENST00000445593.6 ENST00000336273.8 downstream upstream mismatches(1) TTGCGCGCGCGCTCGCGCCACTGCGCCCGGAGCGATGAAGATGGTCGCGCCCTGGACGCGGTTCTACTCCAACAGCTGCTGCTTGTGCTGCCATGTCCGCA...GGCAACTG___CCTCCTAATTTTCCCTACAGAGATGATGTCATGTCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTTAAG|GTGATTCTCATCTAAATGTTCAAGTTAGCAACTTTAAATCTGGAA QLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK|vili* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21447 LAPTM4B::MTDH ENSG00000104341.17::ENSG00000147649.10 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3666 TRUE 1381 LAPTM4B ENSG00000104341.17 protein_coding + + chr8:97775057-97853013:+ chr8:97819238:+ chr8:98787285-98865241:+ chr8:98831466:+ MTDH ENSG00000147649.10 protein_coding + + chr8:97644184-97730260:+ chr8:97690952:+ chr8:98656412-98742488:+ chr8:98703180:+ chr8:97820636 chr8:97688760 NA NA chr8:98832864 chr8:98700988 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Golgi_4-transmembrane_spanning_transporter(23%)|Lysine-rich_CEACAM1_co-isolated_protein_family(36%) Mtp(0%)|LYRIC(25%) 0 1 1 329 289 ENST00000445593.6 ENST00000336273.8 downstream upstream mismatches(1) GGCAACTG___CCTCCTAATTTTCCCTACAGAGATGATGTCATGTCAGTGAATCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATTAGCATTATCTTGACTTTTAAG|TTTCTTCAGGATTGAATGAAAACCTCACTGTCAATGGAGGAGGCTGGAATGAAAAGTCTGTAAAACTCTCCTCACAGATCAGTGCAGGTGAGGAGAAGTGGAACTCCGTTTCACCTGCTTCTGCAGGAA...GCTAATACAAATGGAAAAGACTGGGGAAGGAGTTGGAGTGACCGTTCAATATTTTCTGGCATTG___GGTCTACTGCTGAGCCAGTTTCTCAGTCTACCACTTCTGATTATCAGTG QLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFK|flqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21448 ABHD12::PYGB ENSG00000100997.20::ENSG00000100994.12 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 1987 FALSE NA FALSE NA ABHD12 ENSG00000100997.20 protein_coding - - chr20:25294742-25390835:- chr20:25302219:- chr20:25275378-25371471:- chr20:25282855:- PYGB ENSG00000100994.12 protein_coding + + chr20:25248085-25298012:+ chr20:25295604:+ chr20:25228721-25278648:+ chr20:25276240:+ chr20:25296992,chr20:25296998 chr20:25295203,chr20:25295197 NA NA chr20:25277628,chr20:25277634 chr20:25275839,chr20:25275833 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Serine_aminopeptidase__S33(100%)|Carbohydrate_phosphorylase(8%) Abhydrolase_1(100%),Abhydrolase_3(100%),Abhydrolase_6(100%),Hydrolase_4(100%)|Phosphorylase(2%) 17 6 6 504 1711 ENST00000376542.8 ENST00000216962.9 upstream upstream duplicates(4),mismatches(1) ATTAAATTTGCAAATGATGAAAA___CGTGAAGCACATCTCCTGTCCCCTGCTCATCCTGCACGCTGAGGACGACCCGGTGGTGCCCTTCCAGCTTGGCAGAAAG___CTCTATAGCATCGCCGCACCAGCTCGAAGCTTCCGAGATTTCAAAGTTCAGTTTGTGCCCTTTCATTCAGACCTTGGCTACAGGCACAAATACATTTACAAGAGCCCTGAGCTGCCACGGATACTGAG|GTTCAAGGTGTTTGCAGACTATGAAGCCTACATGCAGTGCCAGGCACAGGTGGACCAGCTGTACCGG___AACCCCAAGGAGTGGACCAAGAAGGTCATCAGGAACATCGCCTGCTCGGGCAAGTTCTCCAGTGACCGGACCATCACGGAGTATGCACGGGAGATCTGGGGTGTGGAGCCCTCCGACCT IKFANDENVKHISCPLLILHAEDDPVVPFQLGRKLYSIAAPARSFRDFKVQFVPFHSDLGYRHKYIYKSPELPRILr|FKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21454 CDH1::TANGO6 ENSG00000039068.20::ENSG00000103047.8 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68738411:+ chr16:68771195-68869440:+ chr16:68772314:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68867079:+ chr16:68877434-69119085:+ chr16:68900982:+ chr16:68762788 chr16:68864772 NA NA chr16:68796691 chr16:68898675 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Cadherin_prodomain_like(31%)|Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_1(100%),Required_for_nuclear_transport_of_RNA_pol_II_C-terminus_2(100%) Cadherin_pro(0%)|RTP1_C1(100%),RTP1_C2(100%) 0 2 3 607 14 ENST00000261769.10 ENST00000261778.2 downstream upstream none GAGAGGCCGCGTCCTGGGCAGAG|TCCTGCACAGATGTGAAGACACAGATGAGGTGTCGGGCCCCAGCTTGGCTTCGGCGTCTATGTGGACAGCTGCTCTCTGAAAGGTTAATGAGACCTAATGGTGTTCAGGCAGTAGTCCGGGGCATTTTGGAAGGAGCAGGTG___CGGGAGCAGCTGGTGGAAGTGATGCTGAGGTGACGGCTGCTGACTGGAAGAAGTGTGACCTGATCGCAAAGATTTTGGCCTCTTGTCCCCA RGRVLGR|vlhrcedtdevsgpslasasmwtaal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 21473 CTNNA1::SIL1 ENSG00000044115.21::ENSG00000120725.13 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA1 ENSG00000044115.21 protein_coding + + chr5:138610967-138935034:+ chr5:138783372:+ chr5:137946656-138270723:+ chr5:138119061:+ SIL1 ENSG00000120725.13 protein_coding - + chr5:138946724-139293557:- chr5:139070438:+ chr5:138282413-138629246:- chr5:138406127:+ chr5:138787342 chr5:139070358 NA NA chr5:138123031 chr5:138406047 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Vinculin_family(9%)| Vinculin(0%)| 40 59 74 394 246 ENST00000522227.5 unknown downstream upstream duplicates(45),mismappers(1),mismatches(6),multimappers(1) CTGCTGTCCATGCAGGCAACATAAACTTCAAGTGGGATCCTAAAAGTCTAGAGATCAGGACTCTGGCAGTTGAGAGACTGTTGGAGCCTCTTGTTACACAG___GTTACAACCCTTGTAAACACCAATAGTAAAGGGCCCTCTAATAAGAAGAGAGGTCGTTCTAAGAAGGCCCATGTTTTGGCTGCATCTGTTGAACAAGCAACTGAGAATTTCTTGGAGAAGGGGGATAAAATTGCGAAGGAGAGCCAGTTTCTCAAGGAGGAGCTTGTGGCTGCTGTAGAAGATGTTCGAAAACAAG|AAAAGGCCTAGAAACAATGACCAACACAGCAGTAATGAGCGACCTAATGGCCAGAATGTAGTCTTAAAACTTCTTAGAGAAACAGCTAATTCCAGTCCTGGGAAGGAAATGTACAAGACGAGCTTAGAATATCTTGTCAAACCAGACAGCAAGAAAACTATCAAAGACTATTAGAGTAACATGAAAAGAACTCATTTGAAAACCTTCAACTGACCAAAAATCAAACAATTTCAACTTCAATAAAAGTAATAATTACAATGAATTAAAGCCCATAAAATATGCTTTGAACCTGTGAG AVHAGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQ|eka* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Catenin Alpha 1 2 AML, MDS, cutaneous melanoma gastric cancer Hereditary Diffuse Gastric Cancer Syndrome epithelial, leukaemia_lymphoma TSG, fusion large_deletion, missense, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 21474 ASAP2::MBOAT2 ENSG00000151693.11::ENSG00000143797.12 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASAP2 ENSG00000151693.11 protein_coding + + chr2:9206765-9405683:+ chr2:9279389:+ chr2:9346894-9545812:+ chr2:9419518:+ MBOAT2 ENSG00000143797.12 protein_coding - + chr2:8852690-9003709:- chr2:8992321:+ chr2:8992820-9143838:- chr2:9132450:+ chr2:9282614,chr2:9282611 chr2:8986003,chr2:8985997 NA NA chr2:9422743,chr2:9422740 chr2:9126132,chr2:9126126 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none BAR_domain_of_APPL_family(15%)| BAR_3(56%)| 37 69 57 285 231 ENST00000315273.4 unknown downstream upstream duplicates(41),mismappers(14),mismatches(11),multimappers(1) GCGGCTGTGCGCCAGCGCCCTCGCGCCGAGGCGATGCCGGACCAGATCTCCGTGTCGGAATTCGTGGCCGAGACCCATGAGGACTACAAGGCGCCCACGGCCTCCAGCTTCACCACCCGCACGGCGCAGTGCCGGAACACTGTGGCGGCCATCGAGGAG___GCTTTGGACGTGGACCGGATGGTTCTTTACAAAATGAAGAAATCCGTGAAAGCAATCAACAGCTCTGGGCTGG|ATTTGAAGGTCTCGCTACATTGCCTGGGCTGATCTCAAACTCCTGGACTCAAGGGATCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTACGGGCATGAGCTACCGTGCCCAGCCTCTCCATTGAGTTTTAACAAGTAAAGTATCACTTAGATGTTTTTCATGTATATATTGTAGTTTTAGCTATAATCTAGTTTCAAAAAGAAAATTAAAAGAACCAGAATGTTTTGTTTGTACAAGCAGGGAGCTATCTATTTTATTTTAACATATACCATACATGTATTGAACTACTTAAATATATCTAAAATTATATGTTATGTATCACCCTGACCTTCCACTAACACCTAAGTCTGGCG MPDQISVSEFVAETHEDYKAPTASSFTTRTAQCRNTVAAIEEALDVDRMVLYKMKKSVKAINSSGL|dlkvslhclg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21475 SEH1L::ENSG00000263588 ENSG00000085415.16::ENSG00000263588.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEH1L ENSG00000085415.16 protein_coding + + chr18:12947133-12987536:+ chr18:12982675:+ chr18:12947132-12987535:+ chr18:12982674:+ ENSG00000263588 ENSG00000263588.1 lncRNA + - chr18:22088060-22098780:+ chr18:22088416:- chr18:19668021-19678741:+ chr18:19668377:- chr18:12983616 chr18:22091462 NA NA chr18:12983615 chr18:19671423 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none WD_domain__G-beta_repeat(100%)| WD40(100%)| 15 35 52 1667 110 ENST00000262124.15 unknown downstream downstream duplicates(18),low_entropy(1),mismatches(3) GGAAGATCTTTCCATATTCTAGCAATAGCGACCAAAGATGTGAGAATTTTTACATTAAAGCCTGTGAG___GAAAGAACTGACTTCCTCTGGTGGGCCAACAAAGTTTGAAATCCATATAGTGGCTCAGTTCGATAATCATAATTCTCAGGTCTGGCGAGTGAGTTGGAATATAACAGGAACGGTGCTAGCATCTTCAGGAGATGATGGGTGTGTAAGATTGTGGAAAG|GTCACAGGTCCAAAAGTAGGAAGAAATCAGTCTGGACTGAAAGAAACCACTTTGTGAATAAGGAGACCTCCCAGCGAAAATCAGCAGTGCAGCCGGCCACACGTCCTCCTGACTGGAGTGTTGAAAACAACACGAGGCTGTGGCACACCCTTGCCACGCTGAGCCACCGCACACATGGAGCCTCTTTATAACCTGCCTGCAAGGATTGGGCAACACTTGGCAAGAAACCCTGGAAAAATCAGCTGACTGTATGGAGACTTTCCTCAGCATTCAATGCCACGCAACCACCCC GRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDGCVRLWK|ghrsksrkksvwternhfvnketsqrksavqpatrppdwsvenntrlwhtlatlshrthgasl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21482 MIR3171HG::SLC7A7 ENSG00000258932.5::ENSG00000155465.21 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1989 TRUE 3669 TRUE 1382 MIR3171HG ENSG00000258932.5 transcribed_processed_pseudogene - - chr14:27258717-27845286:- chr14:27673029:- chr14:27727923-28314492:- chr14:28142235:- SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- chr14:27664836,chr14:27664836,chr14:27664839,chr14:27664839 chr14:22800728,chr14:22800724,chr14:22800690,chr14:22800728 NA NA chr14:28134042,chr14:28134042,chr14:28134045,chr14:28134045 chr14:23269937,chr14:23269933,chr14:23269899,chr14:23269937 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Amino_acid_permease(67%) |AA_permease(14%),AA_permease_2(15%) 10 6 24 72 25 ENST00000553392.5 ENST00000555702.5 upstream downstream duplicates(7) GCACGATGCACGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCTGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTTGCTtACGCTGGGAGCTGTAGACCAGAGCTGTTCCTATTCGGCCTTCTTGGCTCCTTCCCTGGGCTCTTTTATATTGCTGGCAAAATAGTG|GTCTCTTAACCTTCATTAACTGTGCCTATGTCAAATGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAAAGTATTGGCACTGATCGCGGTCATCGTTGCAGGCATTGTTAGACTTGGCCAGG___GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGTTCATCATTTGCAGTGGGTGACATTGCCCTGGCACTGTACTCAGCTCTGTTCTCCTACTCAGGCTGGGACACCCTCAACTATGTCACTGAAGAGATCAAGAATCCTGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21483 MIR3171HG::SLC7A7 ENSG00000258932.5::ENSG00000155465.21 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3669 TRUE 1382 MIR3171HG ENSG00000258932.5 transcribed_processed_pseudogene - - chr14:27258717-27845286:- chr14:27673029:- chr14:27727923-28314492:- chr14:28142235:- SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22778937:- chr14:23242431-23299029:- chr14:23248146:- chr14:27664836,chr14:27664836,chr14:27664839,chr14:27664839 chr14:22800728,chr14:22800724,chr14:22800690,chr14:22800728 NA NA chr14:28134042,chr14:28134042,chr14:28134045,chr14:28134045 chr14:23269937,chr14:23269933,chr14:23269899,chr14:23269937 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Amino_acid_permease(57%) |AA_permease(11%),AA_permease_2(12%) 0 1 9 72 61 ENST00000553392.5 ENST00000555702.5 upstream downstream duplicates(1) CCTGCTTCGGCTCGgGCACGATGCACGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCTGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTTGCTtACGCTGGGAGCTGTAGACCAGAGCTGTTCCTATTCGGCCTTCTTGGCTCCTTCCCTGGGCTCTTTTATATTGCTGGCAAAATAGTG|GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGTTCATCATTTGCAGTGGGTGACATTGCCCTGGCACTGTACTCAGCTCTGTTCTCCTACTCAGGCTGGGACACCCTCAACTATGTCACTGAAGAGATCAAGAATCCTGAGAG___GAACCTGCCCCTCTCCATTGGCATCTCCAT?CCCATTGTCACCATCATCTATATCTTGACCAATGTGGC...___ACTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21484 ZNF555::ARHGAP29-AS1 ENSG00000186300.12::ENSG00000226835.4 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3670 TRUE 1383 ZNF555 ENSG00000186300.12 protein_coding + + chr19:2841437-2860471:+ chr19:2841575:+ chr19:2841435-2860469:+ chr19:2841573:+ ARHGAP29-AS1 ENSG00000226835.4 lncRNA + + chr1:94247819-94411036:+ chr1:94333309:+ chr1:94713375-94876592:+ chr1:94798865:+ chr19:2844467,chr19:2844468 chr1:94285958,chr1:94285956 NA NA chr19:2844465,chr19:2844466 chr1:94751514,chr1:94751512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 28 1 10 39 ENST00000334241.9 ENST00000660441.1 downstream upstream duplicates(9),mismatches(1) GCCCCGCCTGCCCCTAGCGGTCCCTGGCGTCCCGGTTCCTGTCGCGCTCACCTGCGCCGGTAGCGAAGAAATCGCCCCGGGACATG|GTCTGGGCTTGATGTTCACCGATTTTCCCTCAGCTCCGACTGTGGCTCCTCTCAGCTGACTCTGACCCTGCTCTCAGCCGGGCTGCATCTGCCCATCTCAG___CACATCAATAAACAGCAGAGGGAAACTACCACCTTGGAAGGAGCCAGGCAGTTTCTGCTGGGTAGGCCGCAGCCTGGAACATGGAAGTAGCTTCTTCCATCCTACACTGGAAACCACCCAGCATCCCGGGCCCTCCAGAGAAGAGCCAGACTCCCTTCCCTGGGAAGAGACTATAGTCCTATCTGTATCCTCCGTGGTCATTGCCCC M|vwa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21485 ZNF555::ARHGAP29-AS1 ENSG00000186300.12::ENSG00000226835.4 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3670 TRUE 1383 ZNF555 ENSG00000186300.12 protein_coding + + chr19:2841437-2860471:+ chr19:2841575:+ chr19:2841435-2860469:+ chr19:2841573:+ ARHGAP29-AS1 ENSG00000226835.4 lncRNA + + chr1:94247819-94411036:+ chr1:94324155:+ chr1:94713375-94876592:+ chr1:94789711:+ chr19:2844467,chr19:2844468 chr1:94285958,chr1:94285956 NA NA chr19:2844465,chr19:2844466 chr1:94751514,chr1:94751512 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 1 1 10 3 ENST00000591539.1 ENST00000656153.1 downstream upstream none GGACGCCTCTGTCCTAGCCGTGAGTGCCCCGCCTGCCCCTAGCGGTCCCTGGCGTCCCGGTTCCTGTCGCGCTCACCTGCGCCGGTAGCGAAGAAATCGCCCCGGGACATG|ATGCCTCAGCCATGAAC...GCAGCCTGGAACATGGAAGTAGCTTCTTCCATCCTACACTGGAAACCACCCAGCATCCCGGGCCCTCCAGAGAAGAGCCAGACTCCCTTCCCTGGGAAGAG M|mpqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21486 EP300::DHX9 ENSG00000100393.15::ENSG00000135829.17 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41137790:+ chr22:41488596-41576081:+ chr22:41533794:+ DHX9 ENSG00000135829.17 protein_coding + - chr1:182839347-182887982:+ chr1:182881421:- chr1:182808482-182857117:+ chr1:182850556:- chr22:41139449 chr1:182883288 NA NA chr22:41535453 chr1:182852423 NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none KIX_domain(25%),TAZ_zinc_finger(51%)| KIX(0%),zf-TAZ(93%)| 7 5 12 114 2581 ENST00000263253.9 unknown downstream downstream duplicates(8),mismatches(2),multimappers(1) GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAGTTCAAACGCCGAGTCTTCTTTCTGACTCAATGTTGCATTCAGCCATAAATTCTCAAAA___CCCAATGATGAGTGAAAATGCCAGTGTGCCCTCCCTGGGTCCTATGCCAACAGCAGCTCAACCATCCACTACTGGAATTCGGAAACAGTGGCACGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCACAAACT|CATCATCCCAGGCTTGGAATACTGATAAAAGGGCTACGTGATCAGAAAATCTGTTTCCAGCAAAATTTCGATGGATATAGCCCAGCCGCTTTCCTTCATTGATGAAAGGCTCTGGAAAGCAGGTAGCAGCAGCAATGGTACAGATAGCATCTCCCACG___TAGAAAATACACCCCATTATCATCATTTTGCCAAAACGAGGCTCAATGGGGAGTTTAGCCAGGATTCGTCCCAAAGGAGTCAACTCATCATTGGCATCTAATGCATCAAGCT___CTCTAAGAGTGTGTTCT...CATCCAAAGGGGGAGGTTCAATTGCTTTGGCCAGAAATTGGCCAATTCCTCCTAGACGCAGAAGTTTTATGCTAAGAGCAATTTCATGCAATGGTGTTCGGAACATCTCTGGTGTCATGTGGGT ASPMGVNGGVGVQTPSLLSDSMLHSAINSQNPMMSENASVPSLGPMPTAAQPSTTGIRKQWHEDITQDLRNHLVHKl|iipgley* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 21488 SMURF1::KPNA7 ENSG00000198742.10::ENSG00000185467.8 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1991 FALSE NA FALSE NA SMURF1 ENSG00000198742.10 protein_coding - - chr7:99027440-99144108:- chr7:99143726:- chr7:98625063-98741731:- chr7:98741349:- KPNA7 ENSG00000185467.8 protein_coding - - chr7:99173572-99250075:- chr7:99185162:- chr7:98771195-98847698:- chr7:98782785:- chr7:99130387 chr7:99188034 NA NA chr7:98728010 chr7:98785657 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none C2_domain(6%)|Armadillo/beta-catenin-like_repeat(32%),Atypical_Arm_repeat_(100%) C2(0%)|Arm(19%),Arm_3(100%) 0 10 6 303 31 ENST00000361368.7 ENST00000681060.1 upstream downstream duplicates(5),mismatches(1) GGGCGGTGGCGCTGGATCCGCGGCTGCCCGATCGTTGGCGGGAGATGTCGAACCCCGGGACACGCAGGAACGGCTCCAGCATCAAGATCCGTCTGACAG|ACTCCTTCTCTCCGCACCGTGGGGAACATTGTCACGGGCACAGATGAGCAGACGCAGATGGCCATTGATGCGGGTATGCTGAACGTGCTCCCCCAGCTCCTGCAACACAACAAGCCCTCCATCCAGAAGGAGGCAGCCTGGGCCCTGAGCAACGTAGCAGCGGGGCCTTGTCACCACATCCAGCAGCTGCTTGCCTACGACGTCTTGCCTCCCTTGGTGGCTCTGCTAAAAAAC___GGAGAATTTAAAGTCCAGAAAGAGGCTGTCTGGATG?TGGCGAACTTTGC...GTTCTCATCATCCTTGATGTCATCTCTTGCATCCTCCAG___GCGGCAGAGAAACGGTCTGAGAAGGAAAACCTGTGTCTTCTGATAGAAGAACTTGGTGGGAT MSNPGTRRNGSSIKIRLT|dsfsphrgehchghr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match TRUE Liver hepatocellular carcinoma LIVER no_match 98741349 TRUE 98790724 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21490 RPS6KA5::ZBP1 ENSG00000100784.12::ENSG00000124256.15 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3671 TRUE 1384 RPS6KA5 ENSG00000100784.12 protein_coding - - chr14:90847861-91060641:- chr14:90978306:- chr14:91314205-91526985:- chr14:91444650:- ZBP1 ENSG00000124256.15 protein_coding - - chr20:57603846-57620576:- chr20:57615580:- chr20:56178902-56195632:- chr20:56190636:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Protein_kinase_domain(15%)|Adenosine_deaminase_z-alpha_domain(49%) PK_Tyr_Ser-Thr(20%),Pkinase(20%)|RHIM(100%),z-alpha(81%) 4 1 4 66 7 ENST00000614987.5 ENST00000395822.7 upstream downstream none CGGGGACCAGCGCGGACGGCGGCGACGGAGGAGAGCAGCTCCTCACTGTCAAGCACGAGCTGCGGACTG___CTAATTTGACAGGACATGCTGAGAAGGTGGGAATAGAAAATTTTGAGCTCCTGAAGGTCCTAGGAACTGGAG___CTTATGGAAAAGTATTTCTA...CTGGAAAGCTGTATGCCATGAAAGTTTTGAAAAAGGCAACAATCGTTCAAAAGGCCAAAACCACAGAGCATACAAGGACAGAACGACAAGTCCTGGAACACATTAGGCAGTCGCCATTTTTGGTAACATTACATTATGCTTTCCAGACAGAAACCAAACTTCATCTCATTTTAG|CCGAGAGGCCCCAGCAACATGCAGCTACAATTCCAGAGACCCCTGGCCCTCAGTTCAGCCAACAACGGG___AGGAAGACATCTACAGGTTTCTCAAAGACAAT...TGGGAATGAGGACAGCAAAAGATGTGAACCGAGACTTGTACAGGATGAAGAGCAGGCACCTTCTGGACATGGATGAGCAGTCCAAAGCATGGACGATTTAC GKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLIL|aERPQQHAATIPETPGPQFSQQREEDIYRFLKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase alpha-5 AGC RSK MSK O75582 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21491 RPS6KA5::ZBP1 ENSG00000100784.12::ENSG00000124256.15 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3671 TRUE 1384 RPS6KA5 ENSG00000100784.12 protein_coding - - chr14:90847861-91060641:- chr14:90978306:- chr14:91314205-91526985:- chr14:91444650:- ZBP1 ENSG00000124256.15 protein_coding - - chr20:57603846-57620576:- chr20:57616468:- chr20:56178902-56195632:- chr20:56191524:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Protein_kinase_domain(15%)|Adenosine_deaminase_z-alpha_domain(100%) PK_Tyr_Ser-Thr(20%),Pkinase(20%)|RHIM(100%),z-alpha(100%) 2 1 6 66 3 ENST00000614987.5 ENST00000371173.8 upstream downstream duplicates(2) GAAAAGTATTTCTAGTTCGTAAAATAAGTGGCCATGATACTGGAAAGCTGTATGCCATGAAAGTTTTGAAAAAGGCAACAATCGTTCAAAAGGCCAAAACCACAGAGCATACAAGGACAGAACGACAAGTCCTGGAACACATTAGGCAGTCGCCATTTTTGGTAACATTACATTATGCTTTCCAGACAGAAACCAAACTTCATCTCATTTTAG|GCCACCTTGAACAAAGAATCCTGCAGGTGCTGACAGAGGCTGGCTCCCCGGTGAAACTTGCCCAGCTGGTGAAGGAATGCCAAGCACCCAAGAGGGAGCTCAACCAAGTCCTCTACCGAATGAAAAAGGAGTTGAAAGTCTCCCTCACATCCCCT...CAACATGCAGCTACAATTCCAGAGACCCCTGGCCCTCAGTTCAGCCAACAACGGG___AGGAAGACATCTACAGGTTTCTCAAAGACAATGGTCCCCAGAGGGC KVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLIL|gHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase alpha-5 AGC RSK MSK O75582 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21500 GOLIM4::NAALADL2 ENSG00000173905.9::ENSG00000177694.16 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3674 TRUE 1385 GOLIM4 ENSG00000173905.9 protein_coding - - chr3:168008689-168095924:- chr3:168095099:- chr3:167726477-167813712:- chr3:167812887:- NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:174737641:+ chr3:174156363-175528336:+ chr3:174455431:+ chr3:168078595 chr3:174649974 NA NA chr3:167796383 chr3:174367764 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Peptidase_family_M28(100%) |Peptidase_M28(100%) 1 1 5 356 10 ENST00000470487.6 ENST00000434257.1 upstream upstream duplicates(2),multimappers(1) CGGGACTATGGGAAACGGGATGTGCTCCCGAAAGCAGAAGCGGATTTTCCAGACGCTGCTGCTGCTGACCGTCGTGTTCGGCTTTCTCTACGGCGCGATGCTCTACTACGAGCTGCAGACGCAGCTGCGGAAAGCCGAGGCGGTGGCGCTCAAGTACCAGCAGCACCAGGAGTCCCTCTCCGCCCAGTTACAAG|GAAATGAGCATTGACTATTAGGCACCTGGATGAAGACTGGGTCCAGATTGTCAGTCTCCTGTAACCTGCAGAAGCCCTCCAGTTGCACTAGGAACATTCAATTGAA___GTAAAAAGATGGCCTATCAGAAGGTCCATGCAGAgCAAAGAGCTCCAGGA...TTCAAGAAGAATCTGACTACATTACCCATTATACACGATCTGCACCAAAGAGCAATCGCTtCAACTTTTGCCACGTCTTAAAAATACTTTGCACAGCCACC MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQLQ|gneh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4789 chr3:175369540-175369621:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21501 GOLIM4::NAALADL2 ENSG00000173905.9::ENSG00000177694.16 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3674 TRUE 1385 GOLIM4 ENSG00000173905.9 protein_coding - - chr3:168008689-168095924:- chr3:168095099:- chr3:167726477-167813712:- chr3:167812887:- NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:175096790:+ chr3:174156363-175528336:+ chr3:174814580:+ chr3:168078595 chr3:174649974 NA NA chr3:167796383 chr3:174367764 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |Peptidase_family_M28(100%) |Peptidase_M28(100%) 0 1 2 356 22 ENST00000470487.6 ENST00000454872.6 upstream upstream none CGGGACTATGGGAAACGGGATGTGCTCCCGAAAGCAGAAGCGGATTTTCCAGACGCTGCTGCTGCTGACCGTCGTGgTCGGCTTTCTCTACGGCGCGATGCTCTACTACGAGCTGCAGACGCAGCTGCGGAAAGCCGAGGCGGTGGCGCTCAAGTACCAGCAGCACCAGGAGTCCCTCTCCGCCCAGTTACAAG|GTAAAAAGATGGCCTATCAGAAGGTCCATGCAGATCAAAGAGCTCCAGG...TCAAGCCACTGCCCTTGACTTAGAGTGGGACATGGAGAAGGAACTAGAGGAGTCTGGTTTTGACCAATTCCAGCTAGACGGTGCTGAGAATaAGAACCTAGGGCATTCAGAGACTATAGACCTCAATCTTGATTCCATTCAACCAGCAACTTCACCCAAAGGAAGGTTCCAGAGACTTCAAGAAGAATCTGAC MGNGMCSRKQKRIFQTLLLLTVVvGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQLQ|gKKMAYQKVHADQRAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4789 chr3:175369540-175369621:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21503 ENSG00000289849::KCNIP4 ENSG00000289849.1::ENSG00000185774.17 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000289849 ENSG00000289849.1 lncRNA + - chr4:22237413-22317359:+ chr4:22268403:- chr4:22239036-22318982:+ chr4:22270026:- KCNIP4 ENSG00000185774.17 protein_coding - - chr4:20728606-21948772:- chr4:21763032:- chr4:20730229-21950395:- chr4:21764655:- NA NA NA NA NA NA NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' high none |EF-hand_domain_pair(100%) |EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),SPARC_Ca_bdg(100%) 0 2 5 10 7 unknown ENST00000515786.2 upstream downstream duplicates(1) TTTACACCCTCCCCTGAGTTaTGGCCAGGAGGCCTCTCACCTGGTTCAAATTGTTACAACGTTCAGCTGGAGACCTCCTACTCCCTGTGGTTATCTCCCCGCACCTCTGGCCACCCTCCCGAAAGGATCCCTGTGGTGCCAGGCAGGAATGGCCTGCCTGGGGACCCAGCAAGCTCCCAGGGCCCTTCCCACTGCCTCCTCCACCCCTGCATTTCACTCAGCTCTCTAAGTTGACTCAGCTCCAG|AAGCGGTTATTGAGCATTCGCTGTGTACCAAGTGCTGTCCTTGACAAGAAGACTTACACCCAG...ACTTCGGAAGTGGGAGCACCTGTCAGATCATCAT___GATCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGAGTGGCGTGATCACAGCTCACTGCAACCTCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7978 chr4:21464700-21464758:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21507 ANKS3::ENSG00000285567 ENSG00000168096.15::ENSG00000285567.2 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4724750:- chr16:4746511-4784379:- chr16:4774751:- ENSG00000285567 ENSG00000285567.2 lncRNA + - chr16:5103339-5235822:+ chr16:5182207:- chr16:5153340-5285823:+ chr16:5232208:- chr16:4716371,chr16:4716327 chr16:5191768,chr16:5191967 NA NA chr16:4766372,chr16:4766328 chr16:5241769,chr16:5241968 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ankyrin_repeat(81%),Ankyrin_repeats_(3_copies)(75%)| Ank(23%),Ank_2(33%),Ank_3(36%),Ank_4(100%),Ank_5(100%)| 0 2 1 143 8 ENST00000304283.9 unknown upstream downstream duplicates(1),mismappers(2) TTtGGGGGGGTTGGCGACGGCAGCCCGAGGGCGGCGCAAGGCCTGAGGCCCAGCACAG___...CAG?CCTCTTCCACTGTACCAGCGCCGGGCACCAGCACATGGTCAGGTTCCTCTTGGACAGTGGAGC?AATGCCAA...___GGAGCCGATATGTGGATTTACTCCCTTGATGGAAGCAGCTGCTGCTGGCCATGAGATAATCGTGCAGTATTTTCTGAATCAC|AGTCTTGCTCCATCACCCAGGCTGGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCTGCCTCCCCGGTTC...GCCAGGCTGGTCTTAAACTCCTGACCTCAAGTGATCCACCTGCCTCGACCTCCCAAAGTGCTGAGATTACAGATGTGAGCCACCACACCCGACCATGTGGC...TTCCAGAATATTTACTCCCCCTACAAAGAAACCCCATGCCTATTTTAGTCACTCCCCATCCACCCTTTCTGTAGCCCCTGGAAACTGCTGATGTACTTTGG EPICGFTPLMEAAAAGHEIIVQYFLNH|slapsprlecngailahcnlclpg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21508 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3675 TRUE 1386 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322069:+ chr8:127568568-128431295:+ chr8:128334314:+ chr8:127837276 chr8:127297932 NA NA chr8:128849522 chr8:128310177 NA NA sense sense unknown exon/splice-site intron duplication high none none none 0 1 2 264 5 ENST00000651587.1 ENST00000644021.1 downstream upstream none CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACAGAGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACG...GC??aTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21509 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3675 TRUE 1386 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127837276 chr8:127297932 NA NA chr8:128849522 chr8:128310177 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 1 264 6 ENST00000651587.1 ENST00000521586.2 downstream upstream none GCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCG...GTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAG...GGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCACATTtCTTATACAGAGTGGGACAGCATTGGCTGAGTTCgACTAGCAAATGCCGGAGATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21510 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3675 TRUE 1386 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127837276 chr8:127297932 NA NA chr8:128849522 chr8:128310177 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 1 80 6 ENST00000657667.1 ENST00000521586.2 downstream upstream none CTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|AGGTGCTTATTTAGCAAATTCAACCTTAA...GGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCACATTtCTTATACAGAGTGGGACAGCATTGGCTGAGTTCgACTAGCAAATGCCGGAGATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21511 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3675 TRUE 1386 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127837276 chr8:127297932 NA NA chr8:128849522 chr8:128310177 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 0 0 7 6 ENST00000654105.1 ENST00000646670.1 downstream upstream low_entropy(1) CTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21515 KRT14::RMDN3 ENSG00000186847.6::ENSG00000137824.16 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA KRT14 ENSG00000186847.6 protein_coding - - chr17:41582279-41586895:- chr17:41583763:- chr17:39738531-39743147:- chr17:39740015:- RMDN3 ENSG00000137824.16 protein_coding - - chr15:40735884-40755851:- chr15:40743542:- chr15:41028082-41048049:- chr15:41035740:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS intron translocation medium none Intermediate_filament_protein(62%)| Filament(83%)| 13 14 25 37448 52 ENST00000167586.7 ENST00000260385.10 upstream downstream duplicates(15),low_entropy(1),mismatches(1) CAGAGTTGAACCTGCGCATGAGTGTGGAAGCCGACATCtATGGCCTGCGCAGGGTGCTGGACGAACTGACCCTGGCCAGAGCTGACCTGGAGATGCAGATTGAGAGCCTGAAGGAGGAGCTGGCCTACCTGAAGAAGAACCACGAGGAG___GAGATGAATGCCCTGAGAGGCCAGGTGGGTGGAGATGTCAATGTGGAGATGGACGCTGCACCTGGCGTGGACCTGAGCCGCATTCTGAACGAGATGCGTGACCAGTATGAGAAGATGGCAGAGAAGAACCGCAAGGATGCCGAGGAATGGTTCTTCACC|GAGAATGCTTGGACTTTAGAGACTGATGTGTCCTGCTGAACTCCACACACTGAGTCAGG...___GAAAAGAAGAAGCAGAGGCTGCTCTGGAGAAGGGGGATGAGAGTGCTGACTGTCACCTGTG___GTATGCGGTGCTTTGTGGTCAGCTGGCTGAGCATGAGAGCATCCAGAGGCGCATCCAGAGTGGCTTTAGCTTCAAG___GAGCATGTGGACAAAGCCATTGCTCTCCAGCCAGAAAACC ELNLRMSVEADIyGLRRVLDELTLARADLEMQIESLKEELAYLKKNHEEEMNALRGQVGGDVNVEMDAAPGVDLSRILNEMRDQYEKMAEKNRKDAEEWFFT|enawtletdvsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21517 PPP6C::SCAI ENSG00000119414.12::ENSG00000173611.18 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1993 TRUE 3677 TRUE 1387 PPP6C ENSG00000119414.12 protein_coding - - chr9:125146573-125189939:- chr9:125189644:- chr9:127908852-127952218:- chr9:127951923:- SCAI ENSG00000173611.18 protein_coding - - chr9:124942608-125143528:- chr9:125020769:- chr9:127704887-127905807:- chr9:127783048:- chr9:125177333,chr9:125177344 chr9:125023827,chr9:125023835 NA NA chr9:127939612,chr9:127939623 chr9:127786106,chr9:127786114 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Protein_SCAI_(78%) |SCAI(58%) 1 5 13 666 98 ENST00000415905.5 ENST00000336505.11 upstream downstream duplicates(6),mismappers(2),mismatches(3) CGCAGGGAAAGTTCCGGCTTCGGCCTCCGCCGCTGCCGCCGCCGCTGCTACAGCCGCCGCCGCCGCTGTTGCCGCGGCTTGTTATTCTTAAAATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAG|ACCTGAATTGGTAGTTAAGAAGTTACGATATTATGCAAGATTTATAGTAGTTTGTCTTCTTCTCAACAAAATGGATGTTGTAAAGGATCTGGTAAAG___GAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAG___GCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGCTGAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGG MAPLDLDKYVEIARLCKYLPENDLK|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase 6, catalytic subunit 1 Yes melanoma epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 21518 PPP6C::SCAI ENSG00000119414.12::ENSG00000173611.18 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3677 TRUE 1387 PPP6C ENSG00000119414.12 protein_coding - - chr9:125146573-125189939:- chr9:125189644:- chr9:127908852-127952218:- chr9:127951923:- SCAI ENSG00000173611.18 protein_coding - - chr9:124942608-125143528:- chr9:125019205:- chr9:127704887-127905807:- chr9:127781484:- chr9:125177333,chr9:125177344 chr9:125023827,chr9:125023835 NA NA chr9:127939612,chr9:127939623 chr9:127786106,chr9:127786114 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Protein_SCAI_(71%) |SCAI(56%) 1 0 3 666 107 ENST00000415905.5 ENST00000336505.11 upstream downstream duplicates(2),mismatches(2) CGCAGGGAAAGTTCCGGCTTCGGCCTCCGCCGCTGCCGCCGCCGCTGCTACAGCCGCCGCCGCCGCTGTTGCCGCGGCTTGTTATTCTTAAAATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAG|GAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAG___GCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGCTGAAACAGG MAPLDLDKYVEIARLCKYLPENDLK|ELSDEIEDYTHRFNTEDQVEWNLVLQEVAAFIEADPVMVLNDDNTIVITSNRLAET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase 6, catalytic subunit 1 Yes melanoma epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 21525 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3679 TRUE 1388 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178807343:+ chr3:177990720-178562217:+ chr3:178525131:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(100%) |CaKB(100%),KcnmB2_inactiv(100%) 3 3 10 226 81 ENST00000437488.5 ENST00000437510.5 upstream upstream duplicates(7),mismappers(3),mismatches(2) CTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|GTCTTTTTGCCATTCCTCCAGGACATCCACCATAAGGAAAGGAGACCCTGGACCAACATTCTCTAAGATGTTTATATGGACCAGTGGCCGGACCTCTTCATCTTATAGACATGATGAAAAAAG___AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21526 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3679 TRUE 1388 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178842653:+ chr3:177990720-178562217:+ chr3:178560441:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(45%) |CaKB(1%) 1 0 5 226 42 ENST00000437488.5 ENST00000452583.6 upstream upstream duplicates(3) GCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|TGCTCCTATATACCTAAATGTGGAAAAAATTTTGAAGAATCCATGTCCCTGGTGAATGTTGTCATGGAAAACTTCAGGAAGTATCAACACTTCTCCTGCTATTCTGACCCAGAAGGAAACCAGAAGAGTGTTATCCTAACAAAACTCTACAGTTCCAACGTGCTGTTCCATTCACTCTTCTGGCCAACCTGTATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21527 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3679 TRUE 1388 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178825588:+ chr3:177990720-178562217:+ chr3:178543376:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 0 1 2 226 76 ENST00000437488.5 ENST00000437510.5 upstream upstream duplicates(1),mismatches(1) CGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTATTCTCCTGGGACTGGCTATGATGGTGTGCTCCATCATGATGTATTTTCTGCTG...CCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAATTGCTCCTTCAGCTGTGGTCCAGACTGCTGGAAACTTTCTCAGTACCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21528 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3679 TRUE 1388 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178841545:- chr3:178244293-178655140:- chr3:178559333:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178807343:+ chr3:177990720-178562217:+ chr3:178525131:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(100%) |CaKB(100%),KcnmB2_inactiv(100%) 1 0 1 36 81 ENST00000451742.5 ENST00000437510.5 upstream upstream none CCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG___ATGTGC...CATCCATGTGGAACT|GTCTTTTTGCCATTCCTCCAGGACATCCACCATAAGGAAAGGAGACCCTGGACCAACATTCTCTAAGATGTTTATATGGACCAGTGGCCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21529 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3680 TRUE 1389 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178807343:+ chr3:178136911-178561088:+ chr3:178525131:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(100%) |CaKB(100%),KcnmB2_inactiv(100%) 3 3 10 226 81 ENST00000437488.5 ENST00000614557.1 upstream upstream duplicates(7),mismappers(3),mismatches(2) CTGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|GTCTTTTTGCCATTCCTCCAGGACATCCACCATAAGGAAAGGAGACCCTGGACCAACATTCTCTAAGATGTTTATATGGACCAGTGGCCGGACCTCTTCATCTTATAGACATGATGAAAAAAG___AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21530 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3680 TRUE 1389 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178842653:+ chr3:178136911-178561088:+ chr3:178560441:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(46%) |CaKB(1%) 1 0 5 226 42 ENST00000437488.5 ENST00000614557.1 upstream upstream duplicates(3) GCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|TGCTCCTATATACCTAAATGTGGAAAAAATTTTGAAGAATCCATGTCCCTGGTGAATGTTGTCATGGAAAACTTCAGGAAGTATCAACACTTCTCCTGCTATTCTGACCCAGAAGGAAACCAGAAGAGTGTTATCCTAACAAAACTCTACAGTTCCAACGTGCTGTTCCATTCACTCTTCTGGCCAACCTGTATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21531 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3680 TRUE 1389 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178825588:+ chr3:178136911-178561088:+ chr3:178543376:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 0 1 2 226 76 ENST00000437488.5 ENST00000614557.1 upstream upstream duplicates(1),mismatches(1) CGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTATTCTCCTGGGACTGGCTATGATGGTGTGCTCCATCATGATGTATTTTCTGCTG...CCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAATTGCTCCTTCAGCTGTGGTCCAGACTGCTGGAAACTTTCTCAGTACCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21532 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3680 TRUE 1389 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178841545:- chr3:178244293-178655140:- chr3:178559333:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178807343:+ chr3:178136911-178561088:+ chr3:178525131:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(100%) |CaKB(100%),KcnmB2_inactiv(100%) 1 0 1 36 81 ENST00000451742.5 ENST00000614557.1 upstream upstream none CCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG___ATGTGC...CATCCATGTGGAACT|GTCTTTTTGCCATTCCTCCAGGACATCCACCATAAGGAAAGGAGACCCTGGACCAACATTCTCTAAGATGTTTATATGGACCAGTGGCCGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21563 PPP1R13B::KLC1 ENSG00000088808.18::ENSG00000126214.22 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R13B ENSG00000088808.18 protein_coding - - chr14:103733195-103847575:- chr14:103797371:- chr14:104199532-104313912:- chr14:104263708:- KLC1 ENSG00000126214.22 protein_coding + - chr14:103561896-103714249:+ chr14:103608192:- chr14:104028233-104180586:+ chr14:104074529:- chr14:103789638,chr14:103789643 chr14:103618025,chr14:103618027 NA NA chr14:104255975,chr14:104255980 chr14:104084362,chr14:104084364 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 1 4 84 12 ENST00000202556.14 unknown upstream downstream duplicates(2),mismatches(2) CGCGGAGCGTCCTGTCAGGCGGCGGCCGAGGGCGTCGCGGACTCTCCCCGCGATGATGCCG___ATGATATTAACTGTTTTCTTGAGCAACAATGAACAGATTTTAACAGAAGTTCCTATAACACCGGAAACAACCTGTCGAGATGTTGTAGAATTTTGCAAGGAACCTGGAGAAGGCAGCTGCCATTTAGCTGAAGTGTGGAGGGGAAATG|CAGGTTTCTCAGCCCCCGAGGATTCACGATCATCTTTGGGAGGAGAGGGCCACTCACATCCTCCCAACTAAGCTCCATGTTGGCCAACTGGGACCACACGCCTCGGGCAACGTCCAAGGGAAAGGCGATCTGGGGGCAAGAGGCATGAGGTTCGGGCACCTCCAGCAGAGGCGGACTTCCAGCCACGGCCCCCACCTGGGCAGAGGGAACGTCTCCAGACCTGTGGAAACAGGAGGAGGGCAGAGCCGACGGTGGGAG MMPMILTVFLSNNEQILTEVPITPETTCRDVVEFCKEPGEGSCHLAEVWRGN|agfsapedsrsslggeghshppn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21565 PPP1R13B::ENSG00000256500 ENSG00000088808.18::ENSG00000256500.6 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R13B ENSG00000088808.18 protein_coding - - chr14:103733195-103847575:- chr14:103797371:- chr14:104199532-104313912:- chr14:104263708:- ENSG00000256500 ENSG00000256500.6 protein_coding + - chr14:103562962-103685924:+ chr14:103608192:- chr14:104029299-104152261:+ chr14:104074529:- chr14:103789638,chr14:103789643 chr14:103618025,chr14:103618027 NA NA chr14:104255975,chr14:104255980 chr14:104084362,chr14:104084364 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 0 1 4 84 12 ENST00000202556.14 unknown upstream downstream duplicates(2),mismatches(2) CGCGGAGCGTCCTGTCAGGCGGCGGCCGAGGGCGTCGCGGACTCTCCCCGCGATGATGCCG___ATGATATTAACTGTTTTCTTGAGCAACAATGAACAGATTTTAACAGAAGTTCCTATAACACCGGAAACAACCTGTCGAGATGTTGTAGAATTTTGCAAGGAACCTGGAGAAGGCAGCTGCCATTTAGCTGAAGTGTGGAGGGGAAATG|CAGGTTTCTCAGCCCCCGAGGATTCACGATCATCTTTGGGAGGAGAGGGCCACTCACATCCTCCCAACTAAGCTCCATGTTGGCCAACTGGGACCACACGCCTCGGGCAACGTCCAAGGGAAAGGCGATCTGGGGGCAAGAGGCATGAGGTTCGGGCACCTCCAGCAGAGGCGGACTTCCAGCCACGGCCCCCACCTGGGCAGAGGGAACGTCTCCAGACCTGTGGAAACAGGAGGAGGGCAGAGCCGACGGTGGGAG MMPMILTVFLSNNEQILTEVPITPETTCRDVVEFCKEPGEGSCHLAEVWRGN|agfsapedsrsslggeghshppn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21597 STAG3L5P::CASTOR3P ENSG00000290682.1::ENSG00000291122.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STAG3L5P ENSG00000290682.1 lncRNA + + chr7:100336079-100351900:+ chr7:100338889:+ chr7:99933702-99949523:+ chr7:99936512:+ CASTOR3P ENSG00000291122.1 lncRNA - - chr7:100200653-100272218:- chr7:100202603:- chr7:99798276-99869841:- chr7:99800226:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 365 17 ENST00000473757.5 ENST00000649671.1 downstream downstream none AACAAAACGACCACTGAAAACAATGCCG___GTGGCAAAACATCCAAAGAAAGGGTCCCAAGTGGTACATCGTCATAGCTGGAAACAGTCAGAGCCACCAGCCA...AAGTGACATGCAG|GGCCTTGGTGTACCTTGTTGTAGTGTTTGAAAACATCTGAGGCTGCATCCATCTCCAGCACCCCATAAAGCAACAGCTTGCAGAACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21598 CASTOR3P::STAG3L5P ENSG00000291122.1::ENSG00000290682.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASTOR3P ENSG00000291122.1 lncRNA - - chr7:100200653-100272218:- chr7:100222597:- chr7:99798276-99869841:- chr7:99820220:- STAG3L5P ENSG00000290682.1 lncRNA + - chr7:100336079-100351900:+ chr7:100345908:- chr7:99933702-99949523:+ chr7:99943531:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' low none none none 0 1 0 45 341 ENST00000543273.5 unknown upstream downstream none CGACACGCTGCCTGCTGTTGCCACACTCCTCATGGATGTCATGTCCTACTTCAATGG|GAGATAACACCAACAAGTCACTTCCGGCAGACCTCATGGCCACACTGCAAGTTAAAAAAG___GAGACCACAGTGAGAACCTGTCACTAAAGCAGGTGCCCATGATGGGAAGAACTGGAAATTTTATCTAAAGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21599 STAG3L5P-PVRIG2P-PILRB::CASTOR3P ENSG00000272752.6::ENSG00000291122.1 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA STAG3L5P-PVRIG2P-PILRB ENSG00000272752.6 lncRNA + + chr7:100336104-100367831:+ chr7:100338889:+ chr7:99933727-99965454:+ chr7:99936512:+ CASTOR3P ENSG00000291122.1 lncRNA - - chr7:100200653-100272218:- chr7:100202603:- chr7:99798276-99869841:- chr7:99800226:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 1 0 0 365 17 ENST00000310771.8 ENST00000649671.1 downstream downstream none AACAAAACGACCACTGAAAACAATGCCG___GTGGCAAAACATCCAAAGAAAGGGTCCCAAGTGGTACATCGTCATAGCTGGAAACAGTCAGAGCCACCAGCCA...AAGTGACATGCAG|GGCCTTGGTGTACCTTGTTGTAGTGTTTGAAAACATCTGAGGCTGCATCCATCTCCAGCACCCCATAAAGCAACAGCTTGCAGAACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21600 CASTOR3P::STAG3L5P-PVRIG2P-PILRB ENSG00000291122.1::ENSG00000272752.6 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASTOR3P ENSG00000291122.1 lncRNA - - chr7:100200653-100272218:- chr7:100222597:- chr7:99798276-99869841:- chr7:99820220:- STAG3L5P-PVRIG2P-PILRB ENSG00000272752.6 lncRNA + - chr7:100336104-100367831:+ chr7:100345908:- chr7:99933727-99965454:+ chr7:99943531:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' low none none none 0 1 0 45 341 ENST00000543273.5 unknown upstream downstream none CGACACGCTGCCTGCTGTTGCCACACTCCTCATGGATGTCATGTCCTACTTCAATGG|GAGATAACACCAACAAGTCACTTCCGGCAGACCTCATGGCCACACTGCAAGTTAAAAAAG___GAGACCACAGTGAGAACCTGTCACTAAAGCAGGTGCCCATGATGGGAAGAACTGGAAATTTTATCTAAAGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21602 GSTP1::CPT1A ENSG00000084207.18::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3689 TRUE 1390 GSTP1 ENSG00000084207.18 protein_coding + + chr11:67583742-67586656:+ chr11:67585241:+ chr11:67351213-67354127:+ chr11:67352712:+ CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68762761:- chr11:68522088-68611878:- chr11:68530229:- chr11:67586196,chr11:67586197 chr11:68770209,chr11:68770208 NA NA chr11:67353667,chr11:67353668 chr11:68537677,chr11:68537676 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Glutathione_S-transferase__C-terminal_domain(16%),Glutathione_S-transferase__N-terminal_domain(100%)|Choline/Carnitine_o-acyltransferase(30%) GST_C(3%),GST_C_3(3%),GST_N(100%)|Carn_acyltransf(10%) 86 122 150 276 283 ENST00000398603.6 ENST00000376618.6 downstream downstream duplicates(65),mismatches(25) TCGCCACCA___TGCCGCCCTACACCGTGGTCTATTTCCCAGTTCGAG___GCCGCTGCGCGGCCCTGCGCATGCTGCTGGCAGATCAGGGCCAGAGCTGGAAGGAGGAGGTGGTGACCGTGGAGACGTGGCAGGAGGGCTCACTCAAAGCCTCCTGC___CTATACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATACCATCCTGCGTCACCTGGGCCGCACCCTTG___GGCTCTATGGGAAGGACCAGCAGGAGGCAGCCCTGGTGGACATGGTGAATGACGGCGTGGAGGACCTCCGCTGCAAATACATCTCCCTCATCTACACCAACTAT|GACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACG___GTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21603 GSTP1::CPT1A ENSG00000084207.18::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3689 TRUE 1390 GSTP1 ENSG00000084207.18 protein_coding + + chr11:67583742-67586656:+ chr11:67584772:+ chr11:67351213-67354127:+ chr11:67352243:+ CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68762761:- chr11:68522088-68611878:- chr11:68530229:- chr11:67586196,chr11:67586197 chr11:68770209,chr11:68770208 NA NA chr11:67353667,chr11:67353668 chr11:68537677,chr11:68537676 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none Glutathione_S-transferase__N-terminal_domain(100%)|Choline/Carnitine_o-acyltransferase(30%) GST_N(100%)|Carn_acyltransf(10%) 1 2 71 530 283 ENST00000398603.6 ENST00000376618.6 downstream downstream duplicates(13),mismatches(8) CGCCGCCGCAGTCTTCGCCACCA___...GGGCTCACTCAAAGCCTCCTGC___CTATACGGGCAGCTCCCCAAGTTCCAGGACGGAGACCTCACCCTGTACCAGTCCAATACCATCCTGCGTCACCTGGGCCGCACCCTTG|GACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACG___GTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21604 GSTP1::CPT1A ENSG00000084207.18::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3689 TRUE 1390 GSTP1 ENSG00000084207.18 protein_coding + + chr11:67583742-67586656:+ chr11:67583844:+ chr11:67351213-67354127:+ chr11:67351315:+ CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68762761:- chr11:68522088-68611878:- chr11:68530229:- chr11:67586196,chr11:67586197 chr11:68770209,chr11:68770208 NA NA chr11:67353667,chr11:67353668 chr11:68537677,chr11:68537676 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low none |Choline/Carnitine_o-acyltransferase(30%) |Carn_acyltransf(10%) 0 1 0 348 283 ENST00000398603.6 ENST00000376618.6 downstream downstream duplicates(1) CGCCGCCGCAGTCTTCGCCACCA|GACATGGGCcAGTTTTGgCTCACATACGAGGCCTCCATGACCCGGaTCTTCCGAGAGGGGAGGACGGgGAaCGTGCGC...ATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGaGTCCAGCGGAGGGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21605 GSTP1::CPT1A ENSG00000084207.18::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3689 TRUE 1390 GSTP1 ENSG00000084207.18 protein_coding + + chr11:67583742-67586656:+ chr11:67584169:+ chr11:67351213-67354127:+ chr11:67351640:+ CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68761687:- chr11:68522088-68611878:- chr11:68529155:- chr11:67586196,chr11:67586197 chr11:68770209,chr11:68770208 NA NA chr11:67353667,chr11:67353668 chr11:68537677,chr11:68537676 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low none Glutathione_S-transferase__N-terminal_domain(10%)|Choline/Carnitine_o-acyltransferase(22%) GST_N(3%)|Carn_acyltransf(8%) 0 1 0 431 635 ENST00000398603.6 ENST00000376618.6 downstream downstream none CGCCGCCGCAGTCTTCGCCACCA___TGCCGCCCTACACCGTGGTCTATTTCCCAGTTCGAG|GTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAG...TGGAGTCCCCTTTCCTTAAGGAA___GTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21621 MB21D2::FGF12 ENSG00000180611.7::ENSG00000114279.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1995 FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- FGF12 ENSG00000114279.15 protein_coding - - chr3:192139390-192767764:- chr3:192360538:- chr3:191857179-192485553:- chr3:192078327:- chr3:192846821,chr3:192846825,chr3:192846832 chr3:192401392,chr3:192401393,chr3:192401715 NA NA chr3:192564610,chr3:192564614,chr3:192564621 chr3:192119181,chr3:192119182,chr3:192119504 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Fibroblast_growth_factor(98%) |FGF(34%) 20 54 101 168 361 ENST00000392452.3 ENST00000450716.5 upstream downstream duplicates(57),mismappers(6),mismatches(6) GGCGGCTCCCACCGCCAACAAGGCAGCCTCCCTGGGCTGTAACAACAAGCCTGCGTTCCCGGAGCTGGATTTCAGGTCGGGAGCTCGGGTGGAGGAATTGAACAAACTCATCCAAGAATTTACGAAGCACGACCAGCGGGAATACGACGACCAGAGAGCGCTGGAGATTCACACAGCCAAGGATTTCATCTTTTCCATGCTGG|AACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATACTTCCTGCAGATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACA___CTCTCTTCAATCTAATTCCCGTGGGCCTGCGTGTAGTGGCCATCCAAGGAGTGAAGGCTAGCCTCTATGTGGCCATGAATGGTGAAGGCTATCTCTACAGTTCA___GATGTTTTCACTCCAGAATGCAAATTCAAGGAATCTGTGTTTGAAAACTACTATGTGATCTATTCTTCCACACTGTACCGCCAGCAAGAATCAGGCCGAGCTTGGTTTCTGGG AAPTANKAASLGCNNKPAFPELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSML|ePQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 21622 ATM::DPP3 ENSG00000149311.20::ENSG00000254986.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1996 TRUE 3690 TRUE 1391 ATM ENSG00000149311.20 protein_coding + + chr11:108223044-108369102:+ chr11:108223186:+ chr11:108093771-108239829:+ chr11:108093913:+ DPP3 ENSG00000254986.8 protein_coding + + chr11:66480013-66509657:+ chr11:66491253:+ chr11:66247484-66277128:+ chr11:66258724:+ chr11:108224717,chr11:108224714 chr11:66488967,chr11:66488960 NA NA chr11:108095444,chr11:108095441 chr11:66256438,chr11:66256431 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Peptidase_family_M49(85%) |Peptidase_M49(79%) 6 123 29 130 407 ENST00000675843.1 ENST00000532677.5 downstream upstream duplicates(42),low_entropy(1),mismatches(12) CTAACGGAGAAAAGAAGCCGTGGCCaCGGGAGGAGGCGAGAGGAGTCGGGATCTGCGCTGCAGCCACCGCCGCGGTTGATACTACTTTGACCTTCCGAGTGCAGTG|AGCCTTCCCTGGACTCTGAGGTGACTTCCAAGCTGAAGAGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCATCCTCCAGAAGGTGGTGGAGCAGCTGGAGAAAGCCAAG___GCCTATGCAGCCAACAGCCACCAGGGGCAGATGCTGGCCCAGTATATAGAGAGCTTCACCCAGGGCTCCATCGAGGCCCACAAGAGGGGCTCCCGCTTCTGGATCCAGGACAAAGGCCCCATCGTGGAGAG___TTACATCGGGTTCATCGAGAGCTACCGCGACCCCTTTGGTTCCCGAGGAGAATTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine-protein kinase ATM Atypical PIKK ATM Q13315 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ataxia telangiectasia mutated 1 Yes T-PLL leukaemia, lymphoma, medulloblastoma, glioma ataxia-telangiectasia leukaemia_lymphoma, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 21623 ATM::DPP3 ENSG00000149311.20::ENSG00000254986.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3690 TRUE 1391 ATM ENSG00000149311.20 protein_coding + + chr11:108223044-108369102:+ chr11:108223686:+ chr11:108093771-108239829:+ chr11:108094413:+ DPP3 ENSG00000254986.8 protein_coding + + chr11:66480013-66509657:+ chr11:66491253:+ chr11:66247484-66277128:+ chr11:66258724:+ chr11:108224717,chr11:108224714 chr11:66488967,chr11:66488960 NA NA chr11:108095444,chr11:108095441 chr11:66256438,chr11:66256431 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Peptidase_family_M49(85%) |Peptidase_M49(79%) 3 7 32 25 407 ENST00000530958.5 ENST00000532677.5 downstream upstream duplicates(11),mismatches(4) CTTGGCCAATAACCTCCTCCTTTTAAACGCCCTGAATTGAACCCTGCCTCCTGCGCATCCTCTTTTTGTGTCACCTTAGGGTTCAGATTTAACTACGCGACTTGACTAGTCATCTTTTGA...___TACTTTTAGTCAGCGAGCATTTATTGATATTTCAACTTCAGCCTCGCGGTTAAGAGCTTGGGCTCTGGAcaCATACGGC...TGTCAGTCGTGTGGCCGCTCTCTACTGTCTTGTGAAGATAAGTGAGATAATCTTGACCTGTGGTGAGCACTCGTGAGCGTTAGCTGCTGTATTTACCAG|AGCCTTCCCTGGACTCTGAGGTGACTTCCAAGCTGAAGAGCTATGAATTCCGGGGAAGCCCTTTCCAGGTGACCCGGGGGGACTACGCGCCCATCCTCCAGAAGGTGGTGGAGCAGCTGGAGAAAGCCAAG___GCCTATGCAGCCAACAGCCACCAGGGGCAGATGCTGGCCCAGTATATAGAGAGCTTCACCCAGGGCTCCATCGAGGCCCACAAGAGGGGCTCCCGCTTCTGGATCCAGGACAAAGGCCCCATCGTGGAGAG___TTACATCGGGTTCATCGAGAGCTACCGCGACCCCTTTGGTTCCCGAGGAGAATTTGAAG___GTTTCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine-protein kinase ATM Atypical PIKK ATM Q13315 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ataxia telangiectasia mutated 1 Yes T-PLL leukaemia, lymphoma, medulloblastoma, glioma ataxia-telangiectasia leukaemia_lymphoma, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 21624 CGAS::EEF1A1-AS1 ENSG00000164430.17::ENSG00000229862.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3691 TRUE 1392 CGAS ENSG00000164430.17 protein_coding - - chr6:73413515-73452297:- chr6:73445528:- chr6:74123238-74162020:- chr6:74155251:- EEF1A1-AS1 ENSG00000229862.5 lncRNA + + chr6:73523618-73570596:+ chr6:73570287:+ chr6:74233341-74280319:+ chr6:74280010:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Mab-21_protein_nucleotidyltransferase_domain(26%)| Mab-21(16%)| 23 35 73 775 138 ENST00000370318.5 ENST00000429386.1 upstream upstream duplicates(41),mismatches(6) GCGACTCCGCGTTCAGAGGCGTCGGGCTGCTGAACACCGGGAGCTACTATGAGCACGTGAAG___ATTTCTGCACCTAATGAATTTGATGTCATGTTTAAACTGGAAGTCCCCAGAATTCAACTAGAAGAATATTCCAACACTCGTGCATATTACTTTGTGAAATTTAAAAGAAATCCGAAAGAAAATCaTCTGAGTCAGTTTTTAGAAGGTGAAATATTATCAGCTTCTAAGATGCTGTCAAAGTTTAGGAAAATCATTAAGGAAGAAATTAACGACATTAAAG|GAAGAAGACGTATAAGCCTTTAAGCTTAGTAAACCTTTGGGTTCTGTGCATTTGGCCATCATTCCAGTTGTCAGCATTGTGCAGGACAGGTACTTGAGGTCTGTTTTTGTGAACCAGGGACCCGAGGCACAGAGCAAGTAAGTGGATAGAAACAAATGCTGTAAGAACAAATAATTGTATTTAAAAATTTATGATTTTCATTTATTTTTCAGAGGAAGCATTAATGAGTAGGTAGTAATTTCTGGGTATTAAAAAAC DSAFRGVGLLNTGSYYEHVKISAPNEFDVMFKLEVPRIQLEEYSNTRAYYFVKFKRNPKENhLSQFLEGEILSASKMLSKFRKIIKEEINDIK|grrrisl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21625 CGAS::EEF1A1-AS1 ENSG00000164430.17::ENSG00000229862.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3691 TRUE 1392 CGAS ENSG00000164430.17 protein_coding - - chr6:73413515-73452297:- chr6:73451525:- chr6:74123238-74162020:- chr6:74161248:- EEF1A1-AS1 ENSG00000229862.5 lncRNA + + chr6:73523618-73570596:+ chr6:73570287:+ chr6:74233341-74280319:+ chr6:74280010:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Mab-21_protein_nucleotidyltransferase_domain(2%)| Mab-21(0%)| 0 0 0 722 138 ENST00000370318.5 ENST00000431108.5 upstream upstream low_entropy(1) TGTGGACCACCTGCTGCTCAGACTGAAGTGCGACTCCGCGTTCAGAGGCGTCGGGCTGCTGAACACCGGGAGCTACTATGAGCACGTGAAG|GAAGAAGACG...TTGGCCATCATTCCAGTTGTCAGCATTGTGCAGGACAGGTACTTGAGGTCTGTTTTTGTGAACCAGGGACCCGAGGCACAGAGCAAGTAAGTGGATAGAAA VDHLLLRLKCDSAFRGVGLLNTGSYYEHVK|eed NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21627 UVRAG::DYNC2H1 ENSG00000198382.9::ENSG00000187240.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1998 TRUE 3692 TRUE 1393 UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75815524:+ chr11:75526255-75855276:+ chr11:75526569:+ DYNC2H1 ENSG00000187240.17 protein_coding + + chr11:103109410-103479863:+ chr11:103358243:+ chr11:102980139-103350591:+ chr11:103228971:+ chr11:75826144,chr11:76047698 chr11:103338669,chr11:103353294 NA NA chr11:75537189,chr11:75758742 chr11:103209397,chr11:103224022 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Dynein_heavy_chain_C-terminal_domain(98%) VPS38(0%)|Dynein_C(35%) 11 59 51 302 318 ENST00000356136.8 ENST00000375735.7 downstream upstream duplicates(25),mismatches(17) GTGGCAAGGGGGCGGCGGCGGATGCCGGAAGAGTGCCCGCCCCGCCGCTTGGCGGCCCCTGGATCGAGATGAGCGCCTCCGCGTCGGTCGGGGGCCCCGTCCCCCAGCCACCCCCGGGCCCGGCCGCTGCTCTGCCTCCCGGTTCTGCCGCGCGGGCCCTGCATGTGGAGCTGCCGTCTCAGCAG|GTTATTTCACAGTTGAGGATTTTGGGCAGATCCATAACAGCTGGTTCCAAATTTGATAGAGAAATCTGGTCTAATGAACTTTCTCCTGTCCTCAATCTCTGGAAGAAACTAAACCAG___AATTCAAACCTAATACATCAGAAAGTGCCTCCTCCTAACGATCGACAAGGATCTCCAATACTGTCATTCATCATTCTTGAACAATTTAATGCTATTCGTTTAGTACAAAGTGTCCACCA...___TGTCCTCTCGCATGGCAGAGCAAGTGGGAAGGCCCAGAAGATCCCTTACAATACCTGAGAGGTCTTGTTGCCCGTGCCCTTGCAATACAG___AACTGGGTAGATAAAGCTGAAAAACAGGCTCTTC MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQ|VISQLRILGRSITAGSKFDREIWSNELSPVLNLWKKLNQNSNLIHQKVPPPNDRQGSPILSFIILEQFNAIRLVQSVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21628 UVRAG::DYNC2H1 ENSG00000198382.9::ENSG00000187240.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3692 TRUE 1393 UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75815524:+ chr11:75526255-75855276:+ chr11:75526569:+ DYNC2H1 ENSG00000187240.17 protein_coding + + chr11:103109410-103479863:+ chr11:103399663:+ chr11:102980139-103350591:+ chr11:103270391:+ chr11:75826144,chr11:76047698 chr11:103338669,chr11:103353294 NA NA chr11:75537189,chr11:75758742 chr11:103209397,chr11:103224022 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Dynein_heavy_chain_C-terminal_domain(93%) VPS38(0%)|Dynein_C(23%) 1 3 15 302 389 ENST00000356136.8 ENST00000375735.7 downstream upstream duplicates(2),mismatches(4) GTGGCAAGGGGGCGGCGGCGGATGCCGGAAGAGTGCCCGCCCCGCCGCTTGGCGGCCCCTGGATCGAGATGAGCGCCTCCGCGTCGGTCGGGGGCCCCGTCCCCCAGCCACCCCCGGGCCCGGCCGCTGCTCTGCCTCCCGGTTCTGCCGCGCGGGCCCTGCATGTGGAGCTGCCGTCTCAGCAG|AATTCAAACCTAATACATCAGAAAGTGCCTCCTCCTAACGATCGACAAGGATCTCCAATACTGTCATTCATCATTCTTGAACAATTTAATGCTATTCGTTTAGTACAAAGTGTCCACCAGTCTCTTGCTGCTCTCAGCAAAGTCATCAGAGGAACTACTTTACTGAGTTCAGAAGTACAAAAATTGGCAAGTGCTTTATTAAACCAAAAG___TGTCCTCTCGCATGGCAGAGCAAGTGGGAAGGCCCAGAAGATCCCTTACAATACCTGAGAGGTCTTGTTGCCCGTGCCCTTGCAATACAG___AACTG MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQ|NSNLIHQKVPPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRGTTLLSSEVQKLASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21629 UVRAG::DYNC2H1 ENSG00000198382.9::ENSG00000187240.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3692 TRUE 1393 UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75815524:+ chr11:75526255-75855276:+ chr11:75526569:+ DYNC2H1 ENSG00000187240.17 protein_coding + + chr11:103109410-103479863:+ chr11:103435943:+ chr11:102980139-103350591:+ chr11:103306671:+ chr11:75826144,chr11:76047698 chr11:103338669,chr11:103353294 NA NA chr11:75537189,chr11:75758742 chr11:103209397,chr11:103224022 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Dynein_heavy_chain_C-terminal_domain(67%) VPS38(0%)|Dynein_C(12%) 0 1 8 302 602 ENST00000356136.8 ENST00000375735.7 downstream upstream duplicates(2),mismatches(2) TAGGCTGCAGGGGCTTGGTAGGTGGTGGCAAGGGGGCGGCGGCGGATGCCGGAAGAGTGCCCGCCCCGCCGCTTGGCGGCCCCTGGATCGAGATGAGCGCCTCCGCGTCGGTCGGGGGCCCCGTCCCCCAGCCACCCCCGGGCCCGGCCGCTGCTCTGCCTCCCGGTTCTGCCGCGCGGGCCCTGCATGTGGAGCTGCCGTCTCAGCAG|TGTCCTCTCGCATGGCAGAGCAAGTGGGAAGGCCCAGAAGATCCCTTACAATACCTGAGAGGTCTTGTTGCCCGTGCCCTTGCAATACAG___AACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTC MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQ|CPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTFLNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21633 RBL1::CA8 ENSG00000080839.12::ENSG00000178538.10 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RBL1 ENSG00000080839.12 protein_coding - - chr20:36996349-37095997:- chr20:37047053:- chr20:35624752-35724400:- chr20:35675456:- CA8 ENSG00000178538.10 protein_coding - - chr8:60185412-60281400:- chr8:60189985:- chr8:61097971-61193959:- chr8:61102544:- chr20:37046339,chr20:37046345 chr8:60207297,chr8:60207300 NA NA chr20:35674742,chr20:35674748 chr8:61119856,chr8:61119859 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none Domain_of_unknown_function_(DUF3452)(100%),Retinoblastoma-associated_protein_A_domain(77%)| DUF3452(100%),RB_A(82%)| 29 22 64 190 76 ENST00000373664.8 ENST00000317995.5 upstream downstream duplicates(41),low_entropy(4),mismatches(1) AACATTATGAAAATACTAAAAGGAATAGGAGAGACTTTCTGTCAACACTATACTCAATCAACAGATGAACAGCCAGGATCTCACATAG___ACTTTGCTGTAAACAGACTAAAGCTGGCAGAAATTTTGTATTATAAAATACTAGAGACTGTAATGGTTCAGGAAACACGAAGACTTCATGGAATGGACATGTCA___GTTCTTTTAGAGCAAGATATATTTCATCGTTCCTTGATGGCTTGTTGTTTGGAAATTGTGCTCTTTGCCTATAGCTCACCTCGTACTTTTCCTTGGATTATTGAAGTTCTCAACTTGCAACCATTTTACTTTTATAAG|GAGGAAGACAATGGTCCTATAATGCCCTTGGATAAGAAAAGGAAACTTTTGAGCTGCACCTTCAGTTTATCCTCAAAGCCTGCGTTGTTTGTCTTCATCTAATCCAGCTTTGATGGACATCTGTGATGGTTGCCTGTACACTTGCTGAAATGAAATATTAGAAATGGCTGTATATTCCAAAGAAACCCTATATTATATATCCACATTACTGCTGCTAGGATTCATAGTTGCACATACTGTTTATTGCTTATGTGTAGAAGGAATGAAACTAGTTTCCAGA NIMKILKGIGETFCQHYTQSTDEQPGSHIDFAVNRLKLAEILYYKILETVMVQETRRLHGMDMSVLLEQDIFHRSLMACCLEIVLFAYSSPRTFPWIIEVLNLQPFYFYK|eedngpimpldkkrkllsctfslsskpalfvfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21634 UBE2M::EYS ENSG00000130725.8::ENSG00000188107.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2M ENSG00000130725.8 protein_coding - - chr19:58555712-58558954:- chr19:58558273:- chr19:59067079-59070321:- chr19:59069640:- EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:65495993:- chr6:64429876-66417119:- chr6:66205886:- chr19:58558021,chr19:58558023,chr19:58558022,chr19:58558023 chr6:65498765,chr6:65498764,chr6:65498763,chr6:65498763 NA NA chr19:59069388,chr19:59069390,chr19:59069389,chr19:59069390 chr6:66208658,chr6:66208657,chr6:66208656,chr6:66208656 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Ubiquitin-conjugating_enzyme(3%)|EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%) UQ_con(0%)|EGF(100%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%),zf-CCCH_2(100%),zf-CCCH_3(100%) 2 62 17 921 142 ENST00000253023.8 ENST00000503581.6 upstream downstream duplicates(19),mismatches(10) CGGGCCCCGCGGCGGCGGCAGCGGCGGCGGCGGCGGCAGGATGATCAAGCTGTTCTCGCTGAAGCAGCAGAAGAAGGAGGAGGAGTCGGCGGGCGGCACCAAGGGCAGCAGCAAGAAGGCGTCGGCGGCGCAGCTGCGGATCCAGAAGG|GTGTTTTTTGAAAACTAATCAGAAGAGGAATGCTTATCTCCCAAGAAAATTGAAACCATCTGTAAAAGAATCTTGGCTGTGCTGTGTTTTGATTAGATTGAAGCTTGGTGTAAAGAGAAAACACAAAAGACCGCA___GAATATTTACAACATTTGAATTCCTGTTTCTCCATCAAAGCACATTGTCATCAAAGCTACTTTGGGTATAGAAAAAAGGTCAATTCCAATTCCCAGGAATCCTTAACCACAACTTTACTTGGAAATTTCCGGTAATACTTAAAACACCATTTTGCAGCAATTCTTTATGATAAACTGTAAAATACAGCTACCCGAAAATGACTGACAAATCAATCGTCATTC MIKLFSLKQQKKEEESAGGTKGSSKKASAAQLRIQK|gvf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21635 ENSG00000260877::ENSG00000255326 ENSG00000260877.3::ENSG00000255326.1 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3693 TRUE 1394 ENSG00000260877 ENSG00000260877.3 lncRNA + + chr11:69299274-69372512:+ chr11:69313316:+ chr11:69066741-69187280:+ chr11:69080783:+ ENSG00000255326 ENSG00000255326.1 lncRNA + + chr11:75583196-75594665:+ chr11:75594101:+ chr11:75294241-75305710:+ chr11:75305146:+ chr11:69314322,chr11:69314323 chr11:75593716,chr11:75593714 NA NA chr11:69081789,chr11:69081790 chr11:75304761,chr11:75304759 NA NA sense sense unknown intron exon/splice-site deletion high none none none 4 9 57 29 658 unknown ENST00000527803.1 downstream upstream duplicates(22) CAAAGGGTTCAGGAGGCTAAAACCCCTACTCCAGGTCCCCCAGTCTGAGAAGCCCTTTCTGGGACCTTGGACCAGGCCCAGCAGAGCCCCTCTTGAGGGGGCCAAGGGAGGCGCTGGCCCTGAACAGCCTCCAGATCCGGTCCTGTGCCCCTCGCGCTGACAGCTGCCCACAGGCTCCATGCAGAACCTCCCGTCAGACGGGAAGTGTCTTGTTCCAGCTGGCACGGCTTTATCGAACAGTCCTGGCTTT|ATGGAAACTTGACCCAGAATGGACAAGTGATTCTCCAGGTCCAGGACTAAAACATGGGCCTCTCAACATCTCAGCAGGCAGGTGGAAGAGATGGAGCAAACTCACTTGGAGCAAAGATGGGCAGGAGGGGAACAGCGAAGCCCAGGCCAACGGCACCACAGGGCCCCTGGCAGAACATGGACAGAGACAGTGTGATTCCAGGGCTCTGTTCCCTTGCTGCTGCCTCCATGGGCCCCGTACATGTGCTCATGATTCTTAGACACAAACAAAGCTCCCAACACAGTGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21636 ENSG00000260877::ENSG00000255326 ENSG00000260877.3::ENSG00000255326.1 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 1999 TRUE 3693 TRUE 1394 ENSG00000260877 ENSG00000260877.3 lncRNA + + chr11:69299274-69372512:+ chr11:69299428:+ chr11:69066741-69187280:+ chr11:69066895:+ ENSG00000255326 ENSG00000255326.1 lncRNA + + chr11:75583196-75594665:+ chr11:75594101:+ chr11:75294241-75305710:+ chr11:75305146:+ chr11:69314322,chr11:69314323 chr11:75593716,chr11:75593714 NA NA chr11:69081789,chr11:69081790 chr11:75304761,chr11:75304759 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 7 11 37 66 658 ENST00000544781.5 ENST00000527803.1 downstream upstream duplicates(16),mismatches(1) ACAGGCTCCTAAACCCAACCTCGTATCGCCTCCTGCGAGTAGCTTCCAGGTGTCtACAGGGAGCCCGGGGTCATGCTGGCATCATTCATTCTCCACGCATCAGATGATCCTGTGGCCCCTCAGTGCCAGGCCCCACTGGCCCTCTGCGCACATCAGTGACTCTGATGTTCTCCCCCACCGCATGCTGCCAgTCTGATGGTGGAGACAGAACAGCAGTCCCGGATG|ATGGAAACTTGACCCAGAATGGACAAGTGATTCTCCAGGTCCAGGACTAAAACATGGGCCTCTCAACATCTCAGCAGGCAGGTGGAAGAGATGGAGCAAACTCACTTGGAGCAAAGATGGGCAGGAGGGGAACAGCGAAGCCCAGGCCAACGGCACCACAGGGCCCCTGGCAGAACATGGACAGAGACAGTGTGATTCCAGGGCTCTGTTCCCTTGCTGCTGCCTCCATGGGCCCCGTACATGTGCTCATGATTCTTAGACACAAACAAAGCTCCCAACACAGTGATGGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21637 ENSG00000260877::ENSG00000255326 ENSG00000260877.3::ENSG00000255326.1 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3693 TRUE 1394 ENSG00000260877 ENSG00000260877.3 lncRNA + + chr11:69299274-69372512:+ chr11:69309465:+ chr11:69066741-69187280:+ chr11:69076932:+ ENSG00000255326 ENSG00000255326.1 lncRNA + + chr11:75583196-75594665:+ chr11:75594101:+ chr11:75294241-75305710:+ chr11:75305146:+ chr11:69314322,chr11:69314323 chr11:75593716,chr11:75593714 NA NA chr11:69081789,chr11:69081790 chr11:75304761,chr11:75304759 NA NA sense sense unknown exon/splice-site exon/splice-site deletion high none none none 1 9 39 39 658 ENST00000535660.2 ENST00000527803.1 downstream upstream duplicates(16) GGTGGCCGGTTCTTGGTGGGATCTGAGCAG___GTTTGCAGCTGGGGCAACTGGAAGCAGGAGAGGGACCTGGAGAAAGGAAGGCAAAGAG|ATGGAAACTTGACCCAGAATGGACAAGTGATTCTCCAGGTCCAGGACTAAAACATGGGCCTCTCAACATCTCAGCAGGCAGGTGGAAGAGATGGAGCAAACTCACTTGGAGCAAAGATGGGCAGGAGGGGAACAGCGAAGCCCAGGCCAACGGCACCACAGGGCCCCTGGCAGAACATGGACAGAGACAGTGTGATTCCAGGGCTCTGTTCCCTTGCTGCTGCCTCCATGGGCCCCGTACATGTGCTCATGATTCTTAGACACAAACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21638 TRIM29::UVRAG ENSG00000137699.17::ENSG00000198382.9 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2000 TRUE 3694 TRUE 1395 TRIM29 ENSG00000137699.17 protein_coding - - chr11:120111286-120185529:- chr11:120115338:- chr11:119981994-120056237:- chr11:119986046:- UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76065710:+ chr11:75526255-75855276:+ chr11:75776754:+ chr11:120115027,chr11:120115029 chr11:76036323,chr11:76036321 NA NA chr11:119985735,chr11:119985737 chr11:75747367,chr11:75747365 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none B-box_zinc_finger(100%)|Vacuolar_sorting_38_and_autophagy-related_subunit_14(18%) zf-B_box(100%)|ATG14(24%),VPS38(16%) 14 25 23 361 113 ENST00000341846.10 ENST00000356136.8 upstream upstream duplicates(12),mismatches(4) CCGGACATCATACCAGCCCTCGTCTCCTGGCCGCTTCACCAAGGAGACCACCCAGAAGAATTTCAACAATCTCTATGGCACCAAAG___GTAACTACACCTCCCGGGTCTGGGAGTACTCCTCCAGCATTCAGAACTCTGACAATGACCTGCCCGTCGTCCAAGGCAGCTCCTCCTTCTCCCTGAAAG___GCTATCCCTCCCTCATGCGGAGCCAAAGCCCCAAGGCCCAGCCCCAGACTTGGAAATCTGGCAAGCAGACTATGCTG|GTTTCCACTGTATCCAAAAGGAGGGGAGAAGTTGCAGTTTGATTATGGTGTCTATCTTCTGAACAAAAATATAGCACAG___CTAAGATATCAACATGGACTAGGGACTCCAGACTTGCGGCAAACCCTTCCCAACCTGAAAAACTTCATGGAGCATGGACTAATGGTCAGGTG___TGACAGACATCACACCTCCAGTGCAATCCCTGTTCCTAAGAGACAAAGCTCCATATTTGGGGGTGCAGATGTAGGCTTCTCTGGGGGGATCCC RTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSSSFSLKGYPSLMRSQSPKAQPQTWKSGKQTML|vstvskrrgevav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21639 TRIM29::UVRAG ENSG00000137699.17::ENSG00000198382.9 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3694 TRUE 1395 TRIM29 ENSG00000137699.17 protein_coding - - chr11:120111286-120185529:- chr11:120127336:- chr11:119981994-120056237:- chr11:119998044:- UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76140711:+ chr11:75526255-75855276:+ chr11:75851755:+ chr11:120115027,chr11:120115029 chr11:76036323,chr11:76036321 NA NA chr11:119985735,chr11:119985737 chr11:75747367,chr11:75747365 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none B-box_zinc_finger(100%)| zf-B_box(100%)| 1 0 0 327 118 ENST00000341846.10 ENST00000356136.8 upstream upstream none TGCGACTCCTGCATCGGCAACAAGCAGAAGGCGGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCATCTCAAGCCCCACCTGGAGGGCGC...GCCAAGGTGCTGCATGAGGACAAGCAGACCCGGGAGCAGCTGCATAGCATCAGCGACTCTGTGTTGTTTCTGCAG|TGACAGACATCACACCTCCAGTGCAA AKVLHEDKQTREQLHSISDSVLFLQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21640 FBXO22::COMMD4 ENSG00000167196.14::ENSG00000140365.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2001 FALSE NA FALSE NA FBXO22 ENSG00000167196.14 protein_coding + + chr15:75903876-75942511:+ chr15:75917394:+ chr15:76196217-76234852:+ chr15:76209735:+ COMMD4 ENSG00000140365.16 protein_coding + + chr15:75336020-75343224:+ chr15:75338062:+ chr15:75628361-75635565:+ chr15:75630403:+ chr15:75928651,chr15:75928647 chr15:75337319,chr15:75337312 NA NA chr15:76220992,chr15:76220988 chr15:75629660,chr15:75629653 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none F-box_domain(100%)|COMM_domain(100%) F-box(100%),F-box-like(100%)|COMM_domain(100%) 38 5 17 345 914 ENST00000308275.8 ENST00000566843.1 downstream upstream duplicates(20),mismatches(4) CGCGTGGTAGCAGAGGAGCTTGAG___AATGTTCGCATCTTACCACATACAGTTCTTTACATGGCTGATTCAGAAACTTTCATTAGTCTGGAAGAGTGTCGTGGCCATAAGAGAG___CAAGGAAAAGAACTAGTATGGAAACAGCACTTGCCCTTGAGAAGCTATTCCCCAAACAATGCCAAGTCCTTGGGATTGTGACCCCAGGAATTGTAG___TGACTCCAATGGGATCAGGTAGCAATCGACCTCAGGAAATAGAAATTGGAGAATCTGGTTTTGCTTTATTATTCCCTCAAATTGAAGGAATAAAAATACAACCCTTTCATTTTATTAAGGATCCAAAGAATTTAACATTAGAAAGACATCAACTCACTGAAGTAG|AGGTTCCGGTTCTGTGGTGATCTGGACTGTCCCGACTGGGTCCTGGCAGAAATCAGCACGCTGGCCAAGATGGTTGAGTGCACAGGGT RVVAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKNLTLERHQLTEV|evpvlw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21642 GDPD5::WNT11 ENSG00000158555.15::ENSG00000085741.14 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2002 TRUE 3695 TRUE 1396 GDPD5 ENSG00000158555.15 protein_coding - - chr11:75434640-75525941:- chr11:75448977:- chr11:75145685-75236986:- chr11:75160022:- WNT11 ENSG00000085741.14 protein_coding - - chr11:76186325-76210736:- chr11:76196718:- chr11:75897369-75921780:- chr11:75907762:- chr11:75446553,chr11:75446555,chr11:75446555,chr11:75446859 chr11:76201362,chr11:76201363,chr11:76201362,chr11:76201362 NA NA chr11:75157598,chr11:75157600,chr11:75157600,chr11:75157904 chr11:75912406,chr11:75912407,chr11:75912406,chr11:75912406 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Glycerophosphoryl_diester_phosphodiesterase_family(4%)|wnt_family(100%) GDPD(0%)|wnt(100%) 14 9 25 90 36 ENST00000336898.8 ENST00000322563.8 upstream downstream duplicates(13),mismatches(6) GACGAGTGGGAGGTGCTGCTGATCTCCCTGCAG___GGCACAGCGCCATTCCTGCATGTGGGGGCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGtGCAGAGCGGACCT___CCTCCCAGGTGACCATTCTCTGTACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGGCCCCTCTCACCATCTCCTCTCCCTGCATCATGGAGAAGAAAGACCTCGGCCCCAAGCCTGCTCTCATTGGCCACCGCGGGGCCCCCATG|GGCGCTGTCCAAGACACCATCGGCCCTGGCACTGAACCAGACGCAACACTGCAAGCAGCTGGAGGGTCTGGTGTCTGCACAGGTGCAGCTGTGCCGCAGCAACCTGGAGCTCATGCACACGGTGGTGCACGCCGCCCGCGAGGTCATGAAGGCCTGTCGCCGGGCCTTTGCCGACATGCGCTGGAACTGCTCCTCCATTGAGCTCGCCCCCAACTATTTGCTTGACCTGGAGAGAG___GGACCCGGGAGTCGGCCTTCGTGT DEWEVLLISLQGTAPFLHVGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPM|gavqdtigpgtepdatlqaaggsgvctgaavpqqpgahahggarrprgheglspglcrhalelllh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21643 GDPD5::WNT11 ENSG00000158555.15::ENSG00000085741.14 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3695 TRUE 1396 GDPD5 ENSG00000158555.15 protein_coding - - chr11:75434640-75525941:- chr11:75448977:- chr11:75145685-75236986:- chr11:75160022:- WNT11 ENSG00000085741.14 protein_coding - - chr11:76186325-76210736:- chr11:76194844:- chr11:75897369-75921780:- chr11:75905888:- chr11:75446553,chr11:75446555,chr11:75446555,chr11:75446859 chr11:76201362,chr11:76201363,chr11:76201362,chr11:76201362 NA NA chr11:75157598,chr11:75157600,chr11:75157600,chr11:75157904 chr11:75912406,chr11:75912407,chr11:75912406,chr11:75912406 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Glycerophosphoryl_diester_phosphodiesterase_family(4%)|wnt_family(80%) GDPD(0%)|wnt(81%) 1 0 2 90 70 ENST00000336898.8 ENST00000322563.8 upstream downstream none CGCCATTCCTGCATGTGGGGGCTGTGGCAGCAGTCACCATGCTCTCCTGGATCGTGGCAGGACAGTTCGCCCGtGCAGAGCGGACCT___CCTCCCAGGTGACCATTCTCTGTACCTTCTTCACCGTGGTGTTTGCCCTCTACCTGtCCCCTCTCACCATCTCCTCTCCCTGCATCATGGAGAAGAAAGACCTCGGCCCCAAGCCTGCTCTCATTGGCCACCGCGGGGCCCCCATG|GGACCCGGGAGTCGGCCTTCGTGTATGCGCTGTCGGCCGCCGCCATCAGCCACGCCATCGCCCGGGCCTGCACCTCCGGCGACCTGCCCGGCTGCTCCTGCGGCCCCG PFLHVGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLsPLTISSPCIMEKKDLGPKPALIGHRGAPM|gpgsrpscmrcrpppsatpspgpappatcpaapaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21645 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2003 TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47287229:- chr20:45837859-45985633:- chr20:45915973:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47702670:- chr20:46284941-46415360:- chr20:46331414:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Bromodomain(100%),PHD-finger(100%)|Sulfatase(71%),Sulfatase_protein(100%) Bromodomain(100%),PHD(100%)|DUF3740(100%),Sulfatase(30%) 8 5 29 296 179 ENST00000446994.6 ENST00000359930.8 upstream downstream duplicates(9),low_entropy(2),mismatches(4) CAGAAGCCCGTTCCATTGGAACAGCACCCTGACTATGCGGAATACATCTTCCATCCAATGGACCTTTGTACATTGGAAAAG___AATGCGAAAAAGAAAATGTATGGCTGCACAGAAGCCTTCCTGGCTGATGCAAAGTGGATTTTGCACAACTGCATCATTTATAATGGGG___GAAATCACAAATTGACGCAAATAGCGAAAGTAGTCATCAAAATCTGTGAACATGAG|CTTTCTTCGGGAAGTATCTTAATGAATACAACGGCTCCTACGTGCCACCCGGCTGGAAGGAGTGGGTCGGACTCCTTAAAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAG___GATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAGGCCAGTCCTCATGGTCATCAGC QKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHE|lssgsilmnttaptchpagrsgsdslktpafittrcvgtg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21646 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47287229:- chr20:45837859-45985633:- chr20:45915973:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47706903:- chr20:46284941-46415360:- chr20:46335647:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Bromodomain(100%),PHD-finger(100%)|Sulfatase(71%),Sulfatase_protein(100%) Bromodomain(100%),PHD(100%)|DUF3740(100%),Sulfatase(35%) 1 3 35 296 15 ENST00000446994.6 ENST00000478766.1 upstream downstream duplicates(14),mismatches(1) CGAAAAAGAAAATGTATGGCTGCACAGAAGCCTTCCTGGCTGATGCAAAGTGGATTTTGCACAACTGCATCATTTATAATGGGG___GAAATCACAAATTGACGCAAATAGCGAAAGTAGTCATCAAAATCTGTGAACATGAG|GTCCTGAGCCGATTAAGAAATCAGACCCAAGAGTCAGCTGATGAAAGTCAACACTGCACTCTGATGAATCTGGTGAAGGCTaGGTTTGAGGGCATGGCTTCCTTCTGAGAGCATTTGGGCTTCCTGACTAAACTCCAGAGTGTGACAGACTTCCCACTGATGCAGGTCCACACCTCTCCTCCCCGCGCAGACAGGACAAGCCTCCTGAAAACTAGCCCTCCCCGGGGGCAGCTCAGTCCCCAGAGGAAAAGCAAGGGAAGGGATTGGGCTATGCATGCCCACTTCGGCCCTTCAAATCCACTAGGCACATGCTAGGGG KKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHE|vlsrlrnqtqesadesqhctlmnlvkarfegmasf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21647 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47290187:- chr20:45837859-45985633:- chr20:45918931:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47702670:- chr20:46284941-46415360:- chr20:46331414:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Bromodomain(91%),PHD-finger(100%)|Sulfatase(71%),Sulfatase_protein(100%) Bromodomain(60%),PHD(100%)|DUF3740(100%),Sulfatase(30%) 0 1 14 366 179 ENST00000446994.6 ENST00000359930.8 upstream downstream duplicates(1),mismatches(1) CCAGAAGCCCGTTCCATTGGAACAGCACCCTGACTATGCGGAATACATCTTCCATCCAATGGACCTTTGTACATTGGAAAAG___AATGCGAAAAAGAAAATGTATGGCTGCACAGAAGCCTTCCTGGCTGATGCAAAGTGGATTTTGCACAACTGCATCATTTATAATGGGG|CTTTCTTCGGGAAGTATCTTAATGAATACAACGGCTCCTACGTGCCACCCGGCTGGAAGGAGTGGGTCGGACTCCTTAAAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAG___GATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAGGCCAGTCCTCATGGTCATCAG QKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNG|aFFGKYLNEYNGSYVPPGWKEWVGLLKNSRFYNYTLCRNGVKEKHGSDYSKDYLTDLITNDSVSFFRTSKKMYPHRPVLMVI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21648 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47287229:- chr20:45837859-45985633:- chr20:45915973:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47690295:- chr20:46284941-46415360:- chr20:46319039:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Bromodomain(100%),PHD-finger(100%)|Sulfatase(55%),Sulfatase_protein(100%) Bromodomain(100%),PHD(100%)|DUF3740(100%),Sulfatase(14%) 1 0 5 296 259 ENST00000446994.6 ENST00000359930.8 upstream downstream duplicates(1) TTTGTCCTGAATGTGAG___AAAATTACAGTAGCAGAATGCATCGAGACCCAGAGTAAAGCCATGACAATGCTCACCATTGAACAGTTATCCTACCTGCTCAAG...AAAATGTATGGCTGCACAGAAGCCTTCCTGGCTGATGCAAAGTGGATTTTGCACAACTGCATCATTTATAATGGGG___GAAATCACAAATTGACGCAAATAGCGAAAGTAGTCATCAAAATCTGTGAACATGAG|GATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAGGCCAGTCCTCATGGTCATCAGCCATGCAGCCCCCCACGGCCCTGAGGATTCAGCCCCACAATATTCACGCCTCTTCCCAAACGCATCTCAGCACAT___CACGCCGAGCTACAACTACGCGCCCAACCCGGACAAACACTGGATCATGCGCTACACGGGGCCCATGAAGCCCATC KMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHE|DYLTDLITNDSVSFFRTSKKMYPHRPVLMVISHAAPHGPEDSAPQYSRLFPNASQHITPSYNYAPNPDKHWIMRYTGPMKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21649 GLCE::PTPN9 ENSG00000138604.10::ENSG00000169410.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2004 TRUE 3697 TRUE 1398 GLCE ENSG00000138604.10 protein_coding + + chr15:69160584-69272217:+ chr15:69160757:+ chr15:69452923-69564556:+ chr15:69453096:+ PTPN9 ENSG00000169410.11 protein_coding - - chr15:75463251-75579315:- chr15:75490301:- chr15:75755592-75871656:- chr15:75782642:- chr15:69161528,chr15:69161525 chr15:75498237,chr15:75498240 NA NA chr15:69453867,chr15:69453864 chr15:75790578,chr15:75790581 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Protein-tyrosine_phosphatase(100%) |Y_phosphatase(100%) 6 6 27 85 165 ENST00000559798.2 ENST00000618819.5 downstream downstream duplicates(13),mismatches(3) GCACGGCGGTGGCTCGGTCTCCCGGCTGCGCGCGGAGCGGGAGGGCTCTCCTCACACAAGCGCTTCCTTGCCGAGAGGCTGGAGCTGCGGCACCGCAGGCCTGAGCCACCCCTTCTCTGCTGTCTCCTTCTCTTCCTCAGGGCTCCCGTGTCTGCTCGCCCTCCGACGCTGCTCAG|GTCTCCAGGAAACCTAGAGAAAAACCGTTATGGGGATGTACCCTGCCTGGACCAAACTAGAGTGAAGCTAACAAAGCGAAGTGGCCATACTCAG___ACAGATTACATCAATGCCAGTTTCATGGATGGCTACAAGCAGAAGAATGCTTACATTGGCACACAAG___GTCCTTTGGAGAATACCTATCGTGATTTCTGGCTCATGGTATGGGAGCAAAAAGTCTTGGTGATTGTCATGACCACCCG___CTTTGAGGAAGGCGGCAGGAGAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21650 GLCE::PTPN9 ENSG00000138604.10::ENSG00000169410.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3697 TRUE 1398 GLCE ENSG00000138604.10 protein_coding + + chr15:69160584-69272217:+ chr15:69160757:+ chr15:69452923-69564556:+ chr15:69453096:+ PTPN9 ENSG00000169410.11 protein_coding - - chr15:75463251-75579315:- chr15:75479914:- chr15:75755592-75871656:- chr15:75772255:- chr15:69161528,chr15:69161525 chr15:75498237,chr15:75498240 NA NA chr15:69453867,chr15:69453864 chr15:75790578,chr15:75790581 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Protein-tyrosine_phosphatase(88%) |Y_phosphatase(51%) 1 1 15 85 221 ENST00000559798.2 ENST00000618819.5 downstream downstream duplicates(7),mismatches(2) TGCGGGCACGGCGGTGGCTCGGTCTCCCGGCTGCGCGCGGAGCGGGAGGGCTCTCCTCACACAAGCGCTTCCTTGCCGAGAGGCTGGAGCTGCGGCACCGCAGGCCTGAGCCACCCCTTCTCTGCTGTCTCCTTCTCTTCCTCAGGGCTCCCGTGTCTGCTCGCCCTCCGACGCTGCTCAG|ACAGATTACATCAATGCCAGTTTCATGGATGGCTACAAGCAGAAGAATGCTTACATTGGCACACAAG___GTCCTTTGGAGAATACCTATCGTGATTTCTGGCTCATGGTATGGGAGCAAAAAGTCTTGGTGATTGTCATGACCACCCG___CTTTGAGGAAG...CGATTTGGCTTCCTCACAGTGACCAATCTAGGCGTGGAGAACATGAATCATTATAAGAAAACAACGCTAGAAATTCACAACACAGAG___GAACGGCAGAAACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21652 NCOR2::ENSG00000255595 ENSG00000196498.15::ENSG00000255595.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3698 TRUE 1399 NCOR2 ENSG00000196498.15 protein_coding - - chr12:124324415-124567612:- chr12:124449815:- chr12:124808961-125052158:- chr12:124934361:- ENSG00000255595 ENSG00000255595.5 lncRNA + + chr12:126191151-126434227:+ chr12:126254895:+ chr12:126675697-126918773:+ chr12:126739441:+ chr12:124449492,chr12:124449497 chr12:126238990,chr12:126238985 NA NA chr12:124934038,chr12:124934043 chr12:126723536,chr12:126723531 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none G-protein_pathway_suppressor_2-interacting_domain(100%)| GPS2_interact(100%)| 4 3 24 338 13 ENST00000405201.6 ENST00000662644.1 upstream upstream duplicates(9),mismatches(5) GCGGGATCTGAAGACCTCACCAAG___GACCGTAGCCTGACGGGCAAGCTGGAACCGGTGTCTCCCCCCAGCCCCCCaCACACTGACCCTGAGCTGGAGCTGGTGCCGCCACGGCTGTCCAAGGAGGAGCTGATCCAGAACATGGACCGCGTGGACCGAGAGATCACCATGGTAGAGCAGCAGATCTCTAAGCTGAAGAAGAAGCAG___CAACAGCTGGAGGAGGAGGCTGCCAAGCCGCCCGAGCCTGAGAAGCCCGTGTCACCGCCGCCCATCGAGTCGAAGCACCGCAGCCTGGTGCAGATCATCTACGACGAGAACCGG___AAGAAGGCTGAAGCTGCACATCGGATTCTGGAAGGCCTGGGGCCCCAGGTGGAGCTG___CCGCTGTACAACCAGCCCTCCGACACCCGGCAGTATCATGAGAACATCAAAAT|GACAGAGAGGAGTCCTGGGAGGCGGCTCATCATTGCTGAAGATCAAGGCTTGGAGGAGCTACTGGACTTGGAGGTGCAGTCCCGATGCCTGGAGTCCATTCTTGCTGTTCTTGCTGAGAAGATGTTAGAGCACCACAGGCTTGTTGGCCAAGGTCCTGGAAAGGTGAATGCTGCCATTTGCTTTAAGCTCCCCAAAC...ATATTGTTAA...GGCTTTCACATGTACCTCTTCCTTTT...___GAGTCTGAAGACCTGAGGATGG??CCATC...___GTCTGCCTGGACAATATTGGGTCACCTGTCATCTCCAGAGGACCTGGG AGSEDLTKDRSLTGKLEPVSPPSPPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAKPPEPEKPVSPPPIESKHRSLVQIIYDENRKKAEAAHRILEGLGPQVELPLYNQPSDTRQYHENIKm|terspgrrliiaedqgleelldlevqsrclesilavlaekmlehhrlvgqgpgkvnaaicfklpk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 2 1 Yes prostate epithelial TSG missense, frameshift, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 21653 NCOR2::ENSG00000255595 ENSG00000196498.15::ENSG00000255595.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3698 TRUE 1399 NCOR2 ENSG00000196498.15 protein_coding - - chr12:124324415-124567612:- chr12:124449815:- chr12:124808961-125052158:- chr12:124934361:- ENSG00000255595 ENSG00000255595.5 lncRNA + + chr12:126191151-126434227:+ chr12:126350459:+ chr12:126675697-126918773:+ chr12:126835005:+ chr12:124449492,chr12:124449497 chr12:126238990,chr12:126238985 NA NA chr12:124934038,chr12:124934043 chr12:126723536,chr12:126723531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none G-protein_pathway_suppressor_2-interacting_domain(100%)| GPS2_interact(100%)| 0 1 4 338 16 ENST00000405201.6 ENST00000662644.1 upstream upstream mismatches(1) GCCCGTGTCACCGaCGCCCATCGAGTCGAAGCACCGCAGCCTGGTGCAGATCATCTACGACGAGAACgGG___AAGAAGGCTGgAGgTGCACATCGGATTCTGG...TGGAGaTG___CCGCTGTACAACCAGCCCTCCGACACCCGGCAGTATCATGAGAACATCAAAAT|GTCTGCCTGGACAATATTGGGTCACCTGTCATCTCCAGAGGACCTGGGAAAGTGAATCTTTATTCAGTATCTATTCTGGGATGTGAGCTTGGTCAATCAGGAGGAAAGAGAAGGGGACCTGTGGATGGACACTCAAGAGGCGGCTCCAGAAAAAG___GAAATGACAGCTGCACTACAAATGGAAAACCGCGATCACTTACTGTAAGTAGAAGACAATTATAGAATAAATGTAAAAAAGGC EmPLYNQPSDTRQYHENIKm|sawtilghlsspedlgk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 2 1 Yes prostate epithelial TSG missense, frameshift, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 21654 NCOR2::ENSG00000255595 ENSG00000196498.15::ENSG00000255595.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3698 TRUE 1399 NCOR2 ENSG00000196498.15 protein_coding - - chr12:124324415-124567612:- chr12:124449815:- chr12:124808961-125052158:- chr12:124934361:- ENSG00000255595 ENSG00000255595.5 lncRNA + + chr12:126191151-126434227:+ chr12:126407898:+ chr12:126675697-126918773:+ chr12:126892444:+ chr12:124449492,chr12:124449497 chr12:126238990,chr12:126238985 NA NA chr12:124934038,chr12:124934043 chr12:126723536,chr12:126723531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none G-protein_pathway_suppressor_2-interacting_domain(100%)| GPS2_interact(100%)| 0 1 0 338 1 ENST00000405201.6 ENST00000642569.1 upstream upstream none CCGGCAGTATCATGAGAACATCAAAAT|GCCCTTGTTGAATTAGAACACTGCTGCTAAAATTGAAAGCATG___TTTCTGGAAGAGCATTATGCAATCTGTGGAC...TGTGTTTAGGGGAATCCCACTGTGGTGGGTCATCCTCAAAGGCAGCTCCAACCTCTCCTCCTGCCATGTATGCTCACCCCGCTCCTCTGATCGAGAGAGA RQYHENIKm|plln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 2 1 Yes prostate epithelial TSG missense, frameshift, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 21655 GATAD2A::DKK3 ENSG00000167491.18::ENSG00000050165.19 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19465614:+ chr19:19496635-19619741:+ chr19:19576423:+ DKK3 ENSG00000050165.19 protein_coding - + chr11:11956207-12009769:- chr11:11997508:+ chr11:11977754-12031316:- chr11:12019055:+ chr19:19488104,chr19:19488103,chr19:19488102 chr11:11997496,chr11:11997495,chr11:11997491 NA NA chr19:19598913,chr19:19598912,chr19:19598911 chr11:12019043,chr11:12019042,chr11:12019038 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 6 11 12 185 34 ENST00000360315.7 unknown downstream upstream duplicates(2),mismappers(1),mismatches(2) GCCGAACACGGAGTCAGAAACGAGCGCTTGAACGGGACCCAACAGAGGACGATGTGGAGAGCAAGAAAATAAAAATGGAGAGAGGATTGTTGGCTTCAGATTTAAACACTGACGGAGACATGAGGGTGACACCTGAGCCGGGAGCAGGTCCAACCCAAGGATTGCTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAGAGGCGAAGGGCTGGTGGGCGATGGGCCCGTGGACATGCGCACCTCACACAG|AGGCTTCTGTGCTGCCAGGGCTGGGAGAGATGATGGACATTGTTACCTCACTTGAAGATGGGGAAACTGAGGTGCCCTAGCTG___GTCTCTGCCAGCTCTAATATCACAGGAATCTGCAGCCAGGACAAAGTGGAAACTCTTGTACTAATTTGCAGAAGGGAATCAAATTCTAGTTCTGAGAAG RTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGLLRATEATAMAMGRGEGLVGDGPVDMRTSHr|gfcaaragrddghcylt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-640 chr19:19435063-19435158:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21656 ELP2::SLC39A6 ENSG00000134759.14::ENSG00000141424.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36130071:+ chr18:33709407-33760520:+ chr18:33710034:+ SLC39A6 ENSG00000141424.13 protein_coding - + chr18:36108531-36129385:- chr18:36120973:+ chr18:33688494-33709348:- chr18:33700936:+ chr18:36130325,chr18:36130321 chr18:36120755,chr18:36120748 NA NA chr18:33710288,chr18:33710284 chr18:33700718,chr18:33700711 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 5 6 17 174 48 ENST00000358232.11 unknown downstream upstream duplicates(10),mismappers(2),mismatches(3) CCAGTTGGCGACATGGTGGCACCCGTGCTGGAGACTTCTCACGTGTTTTGCTGCCCAAACCGGGTGCGGGGAGTCCTGAACTGGAGCTCTGGGCCCAGAGGACTTCTGGCCTTTGGCACGTCCTGCTCCGTGGTGCTCTATGACCCCCTG|AGAAACCAAAATTGGAAATCATAGATGAAGCAGCATGGCTGATAAAGAAAAAAAGAAACGATACAGAATACGGAACTCCAACTTGAAGAAAATCCTGGTCAATATCAAGTGACCAGAATATGAGTGTACAGATGTATTAGGTTAGACTAAAATGTTGAGATATGAACACATCACTTTTCTTTTCTTTTTTTTTTTTTATTTTTTGAGACAGAGTCTCACTATTGCCCAGGCTGGAGTGCAGTGGTATAATCTCAGCTCACTGCA MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPL|rnqnwks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21657 SIN3A::PTPN9 ENSG00000169375.17::ENSG00000169410.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3699 TRUE 1400 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75407055:- chr15:75661720-75748183:- chr15:75699396:- PTPN9 ENSG00000169410.11 protein_coding - + chr15:75463251-75579315:- chr15:75573611:+ chr15:75755592-75871656:- chr15:75865952:+ chr15:75403058,chr15:75403058,chr15:75403064 chr15:75556293,chr15:75556295,chr15:75556287 NA NA chr15:75695399,chr15:75695399,chr15:75695405 chr15:75848634,chr15:75848636,chr15:75848628 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Paired_amphipathic_helix_repeat(69%)| PAH(69%)| 3 7 14 230 31 ENST00000360439.8 unknown upstream upstream duplicates(6),mismappers(1) TTTTAAGCAAAACAACTGCTGAGAAGGTTGATTCTGTGAGAAATGATCATGGAGGCACTGTCAAGAAGCCCCAACTGAACAACAAGCCGCAGAGGCCCAGCCAGAATGGCTGCCAGATCCGCAGACATCCTACAGGAACCACCCCTCCAGTTAAG___AAGAAACCCAAACTGCTCAATCTGAAGGATTCTTCTATGGCAGATGCCAGCAAACATGGTGGTGGAACAGAATCGTTATTTTTTGATAAG|CCACTCTGAAAGAAGATGATGCTGCCTGTATACAAATCAAGAGTACAACTACTCTTCATTCATTCTGCAAGTATTTCC___AAATCAAACTGACTCTCAAAAGTACAAGGATTTTCCTACACTGAAGAAATTTCAAAGATTCTGCCACAAGCTTCTAAATCAACTCCAAATAAATGTTAAATTGGTTTGAGCAATAGGGCAGCATTACGGAGTGAATGTGTCAGTTCCC LSKTTAEKVDSVRNDHGGTVKKPQLNNKPQRPSQNGCQIRRHPTGTTPPVKKKPKLLNLKDSSMADASKHGGGTESLFFDK|pl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21658 SIN3A::PTPN9 ENSG00000169375.17::ENSG00000169410.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3699 TRUE 1400 SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75407055:- chr15:75661720-75748183:- chr15:75699396:- PTPN9 ENSG00000169410.11 protein_coding - - chr15:75463251-75579315:- chr15:75517364:- chr15:75755592-75871656:- chr15:75809705:- chr15:75403058,chr15:75403058,chr15:75403058,chr15:75403058,chr15:75403058 chr15:75556312,chr15:75556331,chr15:75556339,chr15:75556352,chr15:75556363 NA NA chr15:75695399,chr15:75695399,chr15:75695399,chr15:75695399,chr15:75695399 chr15:75848653,chr15:75848672,chr15:75848680,chr15:75848693,chr15:75848704 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Paired_amphipathic_helix_repeat(69%)|CRAL/TRIO_domain(65%),Protein-tyrosine_phosphatase(100%) PAH(69%)|CRAL_TRIO(62%),CRAL_TRIO_2(66%),Y_phosphatase(100%) 0 1 2 230 119 ENST00000360439.8 ENST00000618819.5 upstream downstream none CCAGAATGGCTGCCAGATCCGCAGACATCCTACAGGAACCACCCCTCCAGTTAAG___AAGAAACCCAAACTGCTCAATCTGAA?GATTCTTCTATGGCAGATG...CAGAATCGTTATTTTTTGATAAG|CTTTGAAACTCAGAGGAATGGACTGGTGTTTATCTATGACATGTGTGGTTCTAATTATGCCAACTTTGAGCTGGATCTTGGCAAGAAAGTCCTAAACCTGCTGAAG___GGAGCATTTCCAGCTCGTTTGAAGAAGGTGCTGATTGTGGGGGCACCCATATGGTTCCGAG ESLFFDK|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 75722528 FALSE 75819602 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21660 SIN3A::ENSG00000260269 ENSG00000169375.17::ENSG00000260269.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75407055:- chr15:75661720-75748183:- chr15:75699396:- ENSG00000260269 ENSG00000260269.5 lncRNA - + chr15:75527150-75601205:- chr15:75573611:+ chr15:75819491-75893546:- chr15:75865952:+ chr15:75403058,chr15:75403058,chr15:75403064 chr15:75556293,chr15:75556295,chr15:75556287 NA NA chr15:75695399,chr15:75695399,chr15:75695405 chr15:75848634,chr15:75848636,chr15:75848628 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Paired_amphipathic_helix_repeat(69%)| PAH(69%)| 3 7 14 230 31 ENST00000360439.8 unknown upstream upstream duplicates(6),mismappers(1) TTTTAAGCAAAACAACTGCTGAGAAGGTTGATTCTGTGAGAAATGATCATGGAGGCACTGTCAAGAAGCCCCAACTGAACAACAAGCCGCAGAGGCCCAGCCAGAATGGCTGCCAGATCCGCAGACATCCTACAGGAACCACCCCTCCAGTTAAG___AAGAAACCCAAACTGCTCAATCTGAAGGATTCTTCTATGGCAGATGCCAGCAAACATGGTGGTGGAACAGAATCGTTATTTTTTGATAAG|CCACTCTGAAAGAAGATGATGCTGCCTGTATACAAATCAAGAGTACAACTACTCTTCATTCATTCTGCAAGTATTTCC___AAATCAAACTGACTCTCAAAAGTACAAGGATTTTCCTACACTGAAGAAATTTCAAAGATTCTGCCACAAGCTTCTAAATCAACTCCAAATAAATGTTAAATTGGTTTGAGCAATAGGGCAGCATTACGGAGTGAATGTGTCAGTTCCC LSKTTAEKVDSVRNDHGGTVKKPQLNNKPQRPSQNGCQIRRHPTGTTPPVKKKPKLLNLKDSSMADASKHGGGTESLFFDK|pl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21662 SPPL2A::TRPM7 ENSG00000138600.11::ENSG00000092439.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2005 TRUE 3700 TRUE 1401 SPPL2A ENSG00000138600.11 protein_coding - - chr15:50702266-50765948:- chr15:50739680:- chr15:50994463-51058145:- chr15:51031877:- TRPM7 ENSG00000092439.16 protein_coding - - chr15:50552473-50686797:- chr15:50583159:- chr15:50844670-50978994:- chr15:50875356:- chr15:50739232,chr15:50739237,chr15:50739237 chr15:50586034,chr15:50586007,chr15:50586036 NA NA chr15:51031429,chr15:51031434,chr15:51031434 chr15:50878231,chr15:50878204,chr15:50878233 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none PA_domain(100%),Signal_peptide_peptidase(12%)|Alpha-kinase_family(100%) PA(100%),Peptidase_A22B(0%)|Alpha_kinase(100%) 7 4 9 222 122 ENST00000261854.10 ENST00000646667.1 upstream downstream duplicates(3),mismatches(1) CACTGTGGCATTAGGTGGATACTGGAGTGGACTAGTTGAATT___GGAAAACTTGAAAGCAGTGACAACTGAAGATAGAGAAATGAGGAAAAAGAAGGAAGAATATTTAACTTTTAGTCCTCTTACAGTTGTAATATTTGTGGTCATCTGCTGTGTTATGATGGTCTTACTTTATTTCTTCTACAAATGGTTGG|CAGAAAAAATCAGTAGAAGGCCATCTACCGAAGACACTCATGAAGTAGATTCCAAAGCAGCTTTAATACCG___GATTGGTTACAAGATAGACCATCAAACAGAGAAAT___GCCATCTGAAGAAGGAACATTAAATG___GTCTCACTTCTCCATTTAAGCCAGCTATGGATACAAATTACTATTATTCAG___CTGTGGAAAGAAATAACTTGATGAGGTTATCACAGAGCATTCCATTTA...GTGCCTCCAAGAG___GGGAGCCTGTCACAGTGTATCGTTTGGAAGAGAGTTCACCCAACATACTAAATAACAGCATGTCTTCTTGGTCACAACTAGGCCTCTGT TVALGGYWSGLVELENLKAVTTEDREMRKKKEEYLTFSPLTVVIFVVICCVMMVLLYFFYKWL|aEKISRRPSTEDTHEVDSKAALIPDWLQDRPSNREMPSEEGTLNGLTSPFKPAMDTNYYYSAVERNNLMRLSQSIPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Transient receptor potential cation channel subfamily M member 7 Atypical Alpha ChaK Q96QT4 TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21663 SPPL2A::TRPM7 ENSG00000138600.11::ENSG00000092439.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3700 TRUE 1401 SPPL2A ENSG00000138600.11 protein_coding - - chr15:50702266-50765948:- chr15:50739680:- chr15:50994463-51058145:- chr15:51031877:- TRPM7 ENSG00000092439.16 protein_coding - - chr15:50552473-50686797:- chr15:50583156:- chr15:50844670-50978994:- chr15:50875353:- chr15:50739232,chr15:50739237,chr15:50739237 chr15:50586034,chr15:50586007,chr15:50586036 NA NA chr15:51031429,chr15:51031434,chr15:51031434 chr15:50878231,chr15:50878204,chr15:50878233 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none PA_domain(100%),Signal_peptide_peptidase(12%)|Alpha-kinase_family(100%) PA(100%),Peptidase_A22B(0%)|Alpha_kinase(100%) 0 1 9 222 122 ENST00000261854.10 ENST00000560955.5 upstream downstream duplicates(2) TGCGGTGTTCACTGTGGCATTAGGTGGATACTGGAGTGGACTAGTTGAATT___GGAAAACTTGAAAGCAGTGACAACTGAAGATAGAGAAATGAGGAAAAAGAAGGAAGAATATTTAACTTTTAGTCCTCTTACAGTTGTAATATTTGTGGTCATCTGCTGTGTTATGATGGTCTTACTTTATTTCTTCTACAAATGGTTGG|AAAAAATCAGTAGAAGGCCATCTACCGAAGACACTCATGAAGTAGATTCCAAAGCAGCTTTAATACCG___GATTGGTTACAAGATAGACCATCAAACAGAGAAAT___GCCATCTGAAGAAGGAACATTAAATG___GTCTCACTTCTCCATTTAAGCCAG...AGGTTATCACAGAGCATTCCATTTACACCTGTGCCTCCAAGAG___GGGAGCCTGTCACAGTGTATCGTTTGGAAGAGAGTTCACCCAACATACTAAATAACAG AVFTVALGGYWSGLVELENLKAVTTEDREMRKKKEEYLTFSPLTVVIFVVICCVMMVLLYFFYKWL|eKISRRPSTEDTHEVDSKAALIPDWLQDRPSNREMPSEEGTLNGLTSPFKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Transient receptor potential cation channel subfamily M member 7 Atypical Alpha ChaK Q96QT4 TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21669 OSBPL1A::ULK4 ENSG00000141447.19::ENSG00000168038.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3702 TRUE 1402 OSBPL1A ENSG00000141447.19 protein_coding - - chr18:24162045-24397880:- chr18:24239220:- chr18:21742009-21977844:- chr18:21819184:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41705305:- chr3:41288090-42003622:- chr3:41746797:- chr18:24225495,chr18:24225497 chr3:41709309,chr3:41709308 NA NA chr18:21805459,chr18:21805461 chr3:41750801,chr3:41750800 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 1 7 10 162 21 ENST00000399443.7 ENST00000301831.9 upstream downstream duplicates(7),mismatches(1) AGCCGGGGTCCTCGGATCTGGCCCAG___GTGAGGAATTTTAAATTGGAACAAGAGCAAGAAAAAAACAAAATCTTGTCAGAAGCACTGGAGACGCTGGCCACTGAACATCATGAATTAGAGCAGTCTCTGGTGAAAGGCTCTCCACCCGCCAGCATCCTTAGCGAGGACGAGTTCTATGATGCGCTGTCAG|AGTCATATTAAATCTGTAGACTCAGGAGAAACGAACATAGATGGAGCCATAG___GACTGACAGCATCAGAAGA...___GTTGTTGACTATATACTGCCA?CCTTGGTGTCCTTGGTTCAAAGCCAAAATG___TGGAGTGGAGACTCTTTAGCTTGCGG...TCGTGAACCAGGAG?TTGGGGATGGCAAGGAGAAGGCCA...___GTATGAGCACATTCTTTTAGAACCTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21670 OSBPL1A::ULK4 ENSG00000141447.19::ENSG00000168038.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3702 TRUE 1402 OSBPL1A ENSG00000141447.19 protein_coding - - chr18:24162045-24397880:- chr18:24239220:- chr18:21742009-21977844:- chr18:21819184:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41681804:- chr3:41288090-42003622:- chr3:41723295:- chr18:24225495,chr18:24225497 chr3:41709309,chr3:41709308 NA NA chr18:21805459,chr18:21805461 chr3:41750801,chr3:41750800 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)| 0 2 3 162 34 ENST00000399443.7 ENST00000301831.9 upstream downstream duplicates(4),mismatches(1) TCTGGCCCAG___GTGAGGAATTTTAAATTGGAACAAGAGCAAGAAAAAAACAAAATCTTGTCAGAAGCACTGGAGACGCTGGCCACTGAACATCATGAATTAGAGCAGTCTCTGGTGAAAGGCTCTCCACCCGCCAGCATCCTTAGCGAGGACGAGTTCTATGATGCGCTGTCAG|GTTGTTGACTATATACTGCCACCCTTGGTGTCCTTGGTTCAAAGCCAAAATG___TGGAGTGGA...TTCTGGCTCTCATTCGAGATGTCTTACTTCCCCA___GTATGAGCACATTCTTTTAGAACCTGACaCAGTACCAGCATATGCTCTGAAACTGCTAGTCGCGATG...ACgGCTCTTTTCCCTGCTTGATATTTTGCACAGCATGCTGACCTATACCTCCGGTATTGTACGGCTGGCTTTGCAG___GCCCAGAAGTCTGGCTCAGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21671 UVRAG::ATM ENSG00000198382.9::ENSG00000149311.20 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2006 FALSE NA FALSE NA UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76016980:+ chr11:75526255-75855276:+ chr11:75728024:+ ATM ENSG00000149311.20 protein_coding + + chr11:108223044-108369102:+ chr11:108288977:+ chr11:108093771-108239829:+ chr11:108159704:+ chr11:76023504 chr11:108288386 NA NA chr11:75734548 chr11:108159113 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Vacuolar_sorting_38_and_autophagy-related_subunit_14(81%)|FATC_domain(100%),FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%) ATG14(51%),C2(100%),VPS38(67%)|FAT(100%),FATC(100%),PI3_PI4_kinase(100%) 4 4 10 678 46 ENST00000356136.8 ENST00000675843.1 downstream upstream duplicates(7) GAAATTGAAGAAAAACTAAGACTCACATCTACAAGCAATGAACTG___AAAAAAAAAAGTGAATGCCTGCAGTTAAAAATTTTGGTGCTTCAGAATGAACTGGA...CTCAGTTGACAATTCGTTGCAGGCAGTTACTCTCTGAGCTTTCCTACATTTACCCTATTGATTTG___AATGAACATAAGGATTACTTTGTATGCGGTGTCAAGTTGCCTAATTCTGAGGACTTCCAAG___CAAAAGATGATGGAAGCATTGCTGTTGCCCTTGGTTATACTGCACATCTGGTCTCCATGATTTCCTTTTTCCTACAAGTGCCCCTCAGATATCCTATAATTCATAAGGGGTCTAGATCAACAATCAAAGACAATATCAATGACAAACTGACGGAAAAGGAGAGAGA|GGATTTGGATCCTGCTCCTAATCCACCTCATTTTCCATCGCATGTGATTAAAGCAACATTTGCCTATATCAGCAATTGTCATAAAACCAAGTTAAAAAGCATTTTAGAAATTCTTTCCAAAAGCCCT___GATTCCTATCAGAAAATTCTTCTTGCCATATGTGAGCAAGCAGCTGAAACAAATAATGTTTATAAGAAGCACAGAATTCTTAAAATATATCACCTGTTTGTTAGTTTATTACTGAAAG QLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKERe|DLDPAPNPPHFPSHVIKATFAYISNCHKTKLKSILEILSKSPDSYQKILLAICEQAAETNNVYKKHRILKIYHLFVSLLLK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine-protein kinase ATM Atypical PIKK ATM Q13315 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ataxia telangiectasia mutated 1 Yes T-PLL leukaemia, lymphoma, medulloblastoma, glioma ataxia-telangiectasia leukaemia_lymphoma, other TSG large_deletion, missense, nonsense, frameshift, splice_site 21672 ZNF131::OXCT1 ENSG00000172262.12::ENSG00000083720.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF131 ENSG00000172262.12 protein_coding + + chr5:43065176-43192021:+ chr5:43123310:+ chr5:43065278-43192123:+ chr5:43123412:+ OXCT1 ENSG00000083720.13 protein_coding - + chr5:41730065-41870425:- chr5:41847007:+ chr5:41730167-41870527:- chr5:41847109:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none BTB/POZ_domain(46%)| BTB(2%)| 10 4 3 466 24 ENST00000505606.6 unknown downstream upstream duplicates(6),mismatches(1) CCCCGCTCTAGCTCGCGTCTCCCGACTCCAATTAG___AGCAGCCCGACGGCCATGGAGGCTGAAGAGACGATGGAATGCCTTCAGGAGTTCCCTGAACATCATAAAATGATCCTCGACCGATTGAATGAACAGCGAGAGCAGGACCGGTTTACTGACATCACCCTAATTGTCGACG___GACACCATTTTAAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTTCTACAAATTCTTTCAGGAGTTTACCCAAGAACCATTGGTGGAGATAGAAG|GATCAACAAAACTGATAGACCGCTAGCAAGACTAATAAAGAAAAAAAGAGAGAAGAATCAAATAGACGCAATAAAAAAT...CCATCAGAGAATACTACAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAATGGATAAATTCCTTGACACATACACTCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGAC MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEPLVEIE|gstklidr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21673 UVRAG::CPT1A ENSG00000198382.9::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75912039:+ chr11:75526255-75855276:+ chr11:75623083:+ CPT1A ENSG00000110090.13 protein_coding - + chr11:68754620-68844410:- chr11:68781856:+ chr11:68522088-68611878:- chr11:68549324:+ chr11:75936914,chr11:75937105,chr11:75937114,chr11:75937118 chr11:68773834,chr11:68773832,chr11:68773832,chr11:68773832 NA NA chr11:75647958,chr11:75648149,chr11:75648158,chr11:75648162 chr11:68541302,chr11:68541300,chr11:68541300,chr11:68541300 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Vacuolar_sorting_38_and_autophagy-related_subunit_14(4%)| ATG14(0%),C2(100%),VPS38(32%)| 2 3 12 830 23 ENST00000356136.8 unknown downstream upstream duplicates(5),mismatches(1) AGACCGTCTTGATACATCTGTGTCTTGTTTCGTGGgGAAGgTATGGGGTGGAAAGGAGAACATCTACCAGCTGTTGATTGAATGGAAAGTCTGTTTGGATG...GAAATACTTGGGTCAGCAG___ATTCATGCCCGAAACCAAAATGAAATAATTTTTGGGCTGAATGATGGATACTATGGTGCTCCATTTGAACATAAG___GGTTATTCAAATGCTCAGAAGACTATTCTTCTGCAGGTGGATCAGAACTGTGTTCGCAATTCTTACGATGTCTTCTCTTTGCTACG|TTTCATCTAACGTCACgAAGAACGCTGCTTTCTCCACAGCATCAAGAGACTGCTTATTTTTCCCACGTCCAAAATAGGCCTGACGACACCTGGCCCAGGGAACTCTGCAGTGAAGATGAAATACGATTAAAGGCAGCCCGACCTGCAGCGATGGAGCGTGATGTTTGAAATGACACAATCAAACCTTTGCAGTTTTTCAGAATTTCTCGAAGGAAAACTCCATGTTGATGATGTTCCCCATCTGAGACTGTTTGCTGGAAGGACT KYLGQQIHARNQNEIIFGLNDGYYGAPFEHKGYSNAQKTILLQVDQNCVRNSYDVFSLLr|fi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21676 NUP88::RRN3P2 ENSG00000108559.13::ENSG00000103472.10 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUP88 ENSG00000108559.13 protein_coding - - chr17:5359668-5420164:- chr17:5394891:- chr17:5262963-5323484:- chr17:5298211:- RRN3P2 ENSG00000103472.10 lncRNA + - chr16:29074976-29116718:+ chr16:29114698:- chr16:29086297-29128039:+ chr16:29126019:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Nuclear_pore_component(61%)| Nup88(42%)| 7 1 7 457 12 ENST00000700529.1 unknown upstream downstream duplicates(6),low_entropy(1) CTCATTCCTTCTCTGTATGTGTTTGAATGTGTTGAGTTGGAGCTTGCTTTGAAACTGGCATCTGGAGAGGATGACCCTTTTGATTCTGACTTTTCTTGTCCAGTCAAACTTCATAGAG___ATCCCAAGTGTCCTTCAAGATATCACTGTACTCATGAAGCTGGTGTACATAGTGTTGGGCTAACTTGGATTCATAAACTTCACAAATTTCTTGGATCAG___ATGAAGAAGATAAGGATAGTTTACAGGAACTCTCTACAGAACAGAAATGCTTTGTTGAACACATCCTTTGTACGAAGCCATTGCCCTGCAG|GCGCGTGTGAGAGAGGGAAGGAACCACGGCATCAGGTGGACCCAAGCCCACGTGATGACACTCAATCAGCTTATCTACAAAGGAGGCACGGTCCATGGCATGACAAACATGCATCGTCTTGAAAAGCAACAATAGGTGGCTGAATCCCTGAATGGCCACTGATAACCCCGCTATTTTCAACAACCAGAGAACATCAAATGTTTGGCTCTCAAATTCTT...ACAGTACACCCATATTATTTTAATTCTGAATTACCAATGATTCTGCCTGGGGTTTTGGGAAAAATCACTCTTATATACCAATAAAACAACCTAGAGCCACG LIPSLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPLPCr|rv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21677 NUP88::ENSG00000284649 ENSG00000108559.13::ENSG00000284649.3 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUP88 ENSG00000108559.13 protein_coding - - chr17:5359668-5420164:- chr17:5394891:- chr17:5262963-5323484:- chr17:5298211:- ENSG00000284649 ENSG00000284649.3 transcribed_unprocessed_pseudogene + - chr16:29113050-29116326:+ chr16:29114698:- chr16:29124371-29127647:+ chr16:29126019:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Nuclear_pore_component(61%)| Nup88(42%)| 7 1 7 457 12 ENST00000700529.1 unknown upstream downstream duplicates(6),low_entropy(1) CTCATTCCTTCTCTGTATGTGTTTGAATGTGTTGAGTTGGAGCTTGCTTTGAAACTGGCATCTGGAGAGGATGACCCTTTTGATTCTGACTTTTCTTGTCCAGTCAAACTTCATAGAG___ATCCCAAGTGTCCTTCAAGATATCACTGTACTCATGAAGCTGGTGTACATAGTGTTGGGCTAACTTGGATTCATAAACTTCACAAATTTCTTGGATCAG___ATGAAGAAGATAAGGATAGTTTACAGGAACTCTCTACAGAACAGAAATGCTTTGTTGAACACATCCTTTGTACGAAGCCATTGCCCTGCAG|GCGCGTGTGAGAGAGGGAAGGAACCACGGCATCAGGTGGACCCAAGCCCACGTGATGACACTCAATCAGCTTATCTACAAAGGAGGCACGGTCCATGGCATGACAAACATGCATCGTCTTGAAAAGCAACAATAGGTGGCTGAATCCCTGAATGGCCACTGATAACCCCGCTATTTTCAACAACCAGAGAACATCAAATGTTTGGCTCTCAAATTCTT...ACAGTACACCCATATTATTTTAATTCTGAATTACCAATGATTCTGCCTGGGGTTTTGGGAAAAATCACTCTTATATACCAATAAAACAACCTAGAGCCACG LIPSLYVFECVELELALKLASGEDDPFDSDFSCPVKLHRDPKCPSRYHCTHEAGVHSVGLTWIHKLHKFLGSDEEDKDSLQELSTEQKCFVEHILCTKPLPCr|rv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21680 CUL5::DNAL1 ENSG00000166266.14::ENSG00000119661.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3704 TRUE 1403 CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108073497:+ chr11:107879624-107978488:+ chr11:107944224:+ DNAL1 ENSG00000119661.15 protein_coding + + chr14:73644875-73703732:+ chr14:73651167:+ chr14:74111578-74170435:+ chr14:74117870:+ chr11:108074738,chr11:108074738,chr11:108074738 chr14:73648929,chr14:73648926,chr14:73648927 NA NA chr11:107945465,chr11:107945465,chr11:107945465 chr14:74115632,chr14:74115629,chr14:74115630 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Cullin_family(53%)| Cullin(62%)|LRR_4(100%) 0 3 10 242 20 ENST00000393094.7 ENST00000555919.7 downstream upstream duplicates(3) TAGAGCCAATGTTGAAAGACTTGGAGGAACATATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATTACTACT___GACTCTGAGAAATACGTTGAGCAGTTACTTACACTATTTAATAGATTTAGTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTTCTTACTGCAAGAGATAAG|AGATGGGGTCTTGCTGTGTTGTCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCAGCCTTGGCTTCCCATAGTGCTGGGATTGCAGGCATGAGCCACCATGTCCAGCTTGAAGATATAATATTGTATCTAGGATTTTCAAATCCATGTTGAAAA___CTGGGCCTTGATTGGTTGAGTCAAGTGAGCTGATTGGTTGATTCAG___GCGAAAGCAACAACAATCAAAGAAGCCTTAGCGAGATGG___GAAGAGAAAACTG EPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDK|rwglavlsrlvsnswpqvilqpwlpivlglqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21681 CUL5::DNAL1 ENSG00000166266.14::ENSG00000119661.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3704 TRUE 1403 CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108073497:+ chr11:107879624-107978488:+ chr11:107944224:+ DNAL1 ENSG00000119661.15 protein_coding + + chr14:73644875-73703732:+ chr14:73653170:+ chr14:74111578-74170435:+ chr14:74119873:+ chr11:108074738,chr11:108074738,chr11:108074738 chr14:73648929,chr14:73648926,chr14:73648927 NA NA chr11:107945465,chr11:107945465,chr11:107945465 chr14:74115632,chr14:74115629,chr14:74115630 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Cullin_family(53%)| Cullin(62%)|LRR_4(100%) 1 1 6 242 78 ENST00000393094.7 ENST00000553645.7 downstream upstream duplicates(1) GAAA___AATTACATTTAATGTTTTCATTGATGGACAAAGTTCCTAATGGTATAGAGCCAATGTTGAAAGACTTGGAGGAACATATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATTACTACT___GACTCTGAGAAATACGTTGAGCAGTTACTTACACTATTTAATAGATTTAGTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTTCTTACTGCAAGAGATAAG|CTGGGCCTTGATTGGTTGAGTCAAGTGAGCTGATTGGTTGATTCAG___GCGAAAGCAA...___GAAGCTTTCACTGTCTACAAACTGCATTGAAAAA...TGCCAACCTGAATGGCTTAA___AAAACTTGAGGATATTATCTTTAGGAAGAAACAACATAAAGAACTTAAATGGACTG___GAGGCAGTAGGGGACACATTAGAAG EKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDK|lgldwlsqvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21682 CUL5::DNAL1 ENSG00000166266.14::ENSG00000119661.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3704 TRUE 1403 CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108073497:+ chr11:107879624-107978488:+ chr11:107944224:+ DNAL1 ENSG00000119661.15 protein_coding + + chr14:73644875-73703732:+ chr14:73654847:+ chr14:74111578-74170435:+ chr14:74121550:+ chr11:108074738,chr11:108074738,chr11:108074738 chr14:73648929,chr14:73648926,chr14:73648927 NA NA chr11:107945465,chr11:107945465,chr11:107945465 chr14:74115632,chr14:74115629,chr14:74115630 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Cullin_family(53%)| Cullin(62%)|LRR_4(100%) 2 1 5 242 175 ENST00000393094.7 ENST00000553645.7 downstream upstream duplicates(2) GGAATGCTGTGTAAATGCCCTGGTGACATCATTTAAAGAGACTATCTTAGCTGAGTGCCAAGGCATGATCAAGAGAAATGAAACTGAAA___AATTACATTTAA...GGACAAAGTTCCTAATGGTATAGAGCCAATGTTGAAAGACTTGGAGGAACATATCATTAGTGCTGGCCTGGCAGATATGGTAGCAGCTGCTGAAACTATTACTACT___GACTCTGAGAAATACGTTGAGCAGTTACTTACACTATTTAATAGATTTAGTAAACTCGTCAAAGAAGCTTTTCAAGATGATCCACGATTTCTTACTGCAAGAGATAAG|GCGAAAGCAACAACAATCAAAGAAGCCTTAGCGAGATGG___GAAGAGAAAACTGGCCAGAGGCCATCTGAAGCCAAAGAGATAAAACTTTATGCCCAGATTCCCCCTATAGAGAAGATGG...TAAATGGACTG___GAGGCAGTAGGGGACACATTAGAAGAACTGTGGATCTCCTACAATTTTATTGAGAAGTTGAAAGGGATCCACATAATGAAGAAATTGAAG DKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYVEQLLTLFNRFSKLVKEAFQDDPRFLTARDK|AKATTIKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21686 PC::EYS ENSG00000173599.15::ENSG00000188107.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PC ENSG00000173599.15 protein_coding - - chr11:66848417-66958386:- chr11:66863774:- chr11:66615888-66725857:- chr11:66631245:- EYS ENSG00000188107.15 protein_coding - + chr6:63719980-65707226:- chr6:65624859:+ chr6:64429876-66417119:- chr6:66334752:+ chr11:66861315,chr11:66861317 chr6:65609510,chr6:65609508 NA NA chr11:66628786,chr11:66628788 chr6:66319403,chr6:66319401 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Biotin_carboxylase_C-terminal_domain(73%),Biotin_carboxylase__N-terminal_domain(100%),Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(100%)| ATP-grasp(100%),Biotin_carb_C(19%),Biotin_carb_N(100%),CPSase_L_D2(100%),Dala_Dala_lig_C(100%)| 2 2 6 62 5 ENST00000529047.6 unknown upstream upstream duplicates(3) CGGGTGTGCCATCCAGTGCCGGGTCACCACCGAGGACCCCGCGCGCAGCTTCCAGCCGGACACCGGCCGCATTGAG___GTGTTCCGGAGCGGAGAGGGCATGGGCATCCGCCTGGATAATGCTTCCGCCTTCCAAGGAGCCGTCATCTCGCCCCACTACGACTCCCTGCTGGTCAAAGTCATTGCCCACGGCAAAGACCACCCCACGGCCGCCACCAAGATGAGCAGGGCCCTTGCGGAGTTCCGCGTCCGAGGTGTGAAG|ATTTTGGGACTTGGACTGGCTTCCTTGCTCCTCAGCTTTCAGACGGCCTACTGTGGGACGTCACCTTGTGATCGT___GTAGGATATCTGAAGTTAGAATCATAAGACTTTTAAGAATCCTGAATTCCAGCAGAACAGCTGATGCCAACCCGAAA?C...___GAATAAATTACTGTGATTAATGGGAGACCCCTGTAAAAAAG GCAIQCRVTTEDPARSFQPDTGRIEVFRSGEGMGIRLDNASAFQGAVISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRGVK|ilglglaslllsfqtaycgtspcdrvgylkles* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3163 chr11:66934434-66934506:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21689 NTN4::CDK17 ENSG00000074527.13::ENSG00000059758.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2010 TRUE 3706 TRUE 1404 NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95682707:- chr12:96051583-96184967:- chr12:96076483:- CDK17 ENSG00000059758.8 protein_coding - - chr12:96278261-96400480:- chr12:96300360:- chr12:96672039-96794258:- chr12:96694138:- chr12:95674638,chr12:95674643 chr12:96303185,chr12:96303187 NA NA chr12:96068414,chr12:96068419 chr12:96696963,chr12:96696965 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Laminin_EGF_domain(100%),Laminin_N-terminal_(Domain_VI)(100%),UNC-6/NTR/C345C_module(0%)|Protein_kinase_domain(100%) BNR_6(100%),Laminin_EGF(100%),Laminin_N(100%),NTR(0%)|Haspin_kinase(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 2 1 6 522 179 ENST00000343702.9 ENST00000261211.8 upstream downstream duplicates(3) GCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCTATCACCGGAGACTGCATCAGCAG___CCACACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAGGATGCGCAGGGGTTTTCTGCACTTCTACACTCAG|TCAGAAATTGGCTTTGGAAAAATGGAAACCTACATCAAATTGGAAAAGCTTGGAGAG___GGTAC...GATCCGATTGGAACATGAAGAAGGTGCACCCTGCACAGCTATAAGAGAAG___TTTCACTATTAAAGGATTTAAAACATGCAAATATAGTAACCTTACATGACA PCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDPITGDCISSHTDIDWYHEVPDFRPVHNKSEPAWEWEDAQGFSALLHS|vrnwlwkngnlhqigkawrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 17 CMGC CDK PCTAIRE Q00537 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21690 NTN4::CDK17 ENSG00000074527.13::ENSG00000059758.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3706 TRUE 1404 NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95710441:- chr12:96051583-96184967:- chr12:96104219:- CDK17 ENSG00000059758.8 protein_coding - - chr12:96278261-96400480:- chr12:96300360:- chr12:96672039-96794258:- chr12:96694138:- chr12:95674638,chr12:95674643 chr12:96303185,chr12:96303187 NA NA chr12:96068414,chr12:96068419 chr12:96696963,chr12:96696965 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Laminin_EGF_domain(67%),Laminin_N-terminal_(Domain_VI)(100%)|Protein_kinase_domain(100%) BNR_6(100%),Laminin_EGF(99%),Laminin_N(100%)|Haspin_kinase(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 0 0 575 179 ENST00000343702.9 ENST00000261211.8 upstream downstream none CAACGAGTGCAGAA___CCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTG...GCTTGCAAAC|TCAGAAATTGGCTTTGGAAAAATGGAAACCTACATCAAATTGGAAAAGCTTGGAGAG___GGTACATATGCAACAGTATATAAAGGAAGAAGT ACK|lrnwlwkngnlhqigkawrgyicnsi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 17 CMGC CDK PCTAIRE Q00537 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21691 CWF19L2::C11orf65 ENSG00000152404.16::ENSG00000166323.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107416209:- chr11:107197086-107328551:- chr11:107286935:- C11orf65 ENSG00000166323.13 protein_coding - + chr11:108308519-108467531:- chr11:108398621:+ chr11:108179246-108338258:- chr11:108269348:+ chr11:107393428,chr11:107393430 chr11:108382103,chr11:108382101 NA NA chr11:107264154,chr11:107264156 chr11:108252830,chr11:108252828 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 5 1 3 134 6 ENST00000282251.10 unknown upstream upstream duplicates(3) CCTGGGgCTTTAGAAACGTGTAGAAGAGAATCTAACCCAAGGCAAAATCAAGAGTTTTCTTTTGGCAATTTGAGAGCTAAATTCTTGAGtCCCTCTGATGA...GTAGCTCAGGGCTCTTTGTGTAGTGGTTTTAGAAAACCCACCAAGAACAGTGAAGAAAGATTAACATCATGGAGTCGCTCTGATGGGAGAGGAGACAAGAA...TGACCCTCCAcAAAAAGAACcTCTACGGGATACAAAGTCTACATTTGCTGG___CAGTCCAGAGCGTGAGTCCATTCACATCCTGAGTGTTGATGAGAAGAACAAGTTGGGAGCCAAGATTATCAAAGCAGAGATGATGGGGAATATG___GAATTAGCTGAACAACTTAAAGTTCAACTTGAAAAGGCAAATAAATTCAAAGAAACTATAACACAGATACCAAAAAAATCTGGGGTAGAG|ATGCTGTTTCCCAGCTAGTAATGTGACGGTGCTTCAGCAAGTCATGCCACCATTCTGTCAAAGCCAG...AGAAGTAATGCAGGCAGAGAAATAAAATTAATATCCAGAATATTTGTCTATCACTGTGAGGACAAATGGATGCCTCCTCTATTATGGGAATGGTCTATTTT DPPqKEpLRDTKSTFAGSPERESIHILSVDEKNKLGAKIIKAEMMGNMELAEQLKVQLEKANKFKETITQIPKKSGVE|mlfps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21692 UVRAG::DGAT2 ENSG00000198382.9::ENSG00000062282.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2011 TRUE 3707 TRUE 1405 UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75861780:+ chr11:75526255-75855276:+ chr11:75572825:+ DGAT2 ENSG00000062282.15 protein_coding + + chr11:75759512-75801535:+ chr11:75784618:+ chr11:75470557-75512580:+ chr11:75495663:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Diacylglycerol_acyltransferase_(100%) C2(35%),VPS38(15%)|DAGAT(100%) 2 1 6 387 149 ENST00000356136.8 ENST00000228027.12 downstream upstream duplicates(2) GCTTGGTAGGcGGTGGCAAGGGGGCGGCGGCGGATGCCGGAAGAGTGCCCGCCCCGCCGCTTGGCGGCCCCTGGATCGAGATGAGCGCCTCCGCGTCGGTCGGGGGCCCCGTCCCaCAGCCACCCCCGGGCCCGGCCGCTGCTCTGCCTCCCGGTTCTGCCGCGCGGGCC...TGGCCATCAGCTCCTTGATACCTACTTTACACTTCACTTGTGTAGTACTGAAAAGATATATAAAG___AATTTTATAGAAGTGAAGTGATTAAGAATTCCTTG|GCACTGGATCCAGCATCCTCTCCGCCCTCCAGGACCTCTTCTCTGTCACCTGGCTCAATAGGTCCAAGGTGGAAAAGCAGCTACAGGTCATCTCAGTGCTCCAGTGGGTCCTGTCCTTCCTTGTACTGG___GAGTGGCCTGCAGTGCCATCCTCATGTACATATTCTGCACTGATTGCcGG...GTGGGTCCGAAACTGGGCTGTGTGGCGCTACTTTCGAGACTACTTTCCCATCCAG___CTGGTGAAGACACACAACCTGCTGACCACCAGGAACTATATCTTTG GHQLLDTYFTLHLCSTEKIYKEFYRSEVIKNSL|aldpassppsrtsslspgsigprwkssyrssqcssgscpslywewpavpssctysalia NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 75526569 FALSE 75507373 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21693 UVRAG::DGAT2 ENSG00000198382.9::ENSG00000062282.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3707 TRUE 1405 UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75861780:+ chr11:75526255-75855276:+ chr11:75572825:+ DGAT2 ENSG00000062282.15 protein_coding + + chr11:75759512-75801535:+ chr11:75790188:+ chr11:75470557-75512580:+ chr11:75501233:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Diacylglycerol_acyltransferase_(100%) C2(35%),VPS38(15%)|DAGAT(100%) 0 1 1 387 248 ENST00000356136.8 ENST00000376262.7 downstream upstream duplicates(1) TGAAAAGATATATAAAG___AATTTTATAGAAGTGAAGTGATTAAGAATTCCTTG|GAGTGGCCTGCAGTGCCATCCTCATGTACATATTCTGCACTGATTGCTG...TGGATGGGAAATCTGAACTCAGGCCTTAACCCACCCACgGGGAAGCAAGTTTAGACCAAGTTGGTCTCTTCATTTCCTTTCTACTGTGTCACTGGCTGTGC EKIYKEFYRSEVIKNSL|ewpavpssctysalia NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 75526569 FALSE 75507373 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21696 SCFD2::POLR2B ENSG00000184178.17::ENSG00000047315.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2012 FALSE NA FALSE NA SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53273826:- chr4:53739149-54232233:- chr4:54139993:- POLR2B ENSG00000047315.17 protein_coding + + chr4:56977722-57031158:+ chr4:56994404:+ chr4:57843888-57897324:+ chr4:57860570:+ chr4:53182687 chr4:56992512 NA NA chr4:54048854 chr4:57858678 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Sec1_family(19%)|RNA_polymerase_Rpb2__domain_2(100%),RNA_polymerase_Rpb2__domain_3(100%),RNA_polymerase_Rpb2__domain_4(100%),RNA_polymerase_Rpb2__domain_5(100%),RNA_polymerase_Rpb2__domain_6(100%),RNA_polymerase_Rpb2__domain_7(100%),RNA_polymerase_beta_subunit(91%) Sec1(0%)|RNA_pol_Rpb2_1(77%),RNA_pol_Rpb2_2(100%),RNA_pol_Rpb2_3(100%),RNA_pol_Rpb2_4(100%),RNA_pol_Rpb2_5(100%),RNA_pol_Rpb2_6(100%),RNA_pol_Rpb2_7(100%) 2 1 3 91 389 ENST00000401642.8 ENST00000381227.5 upstream upstream duplicates(1),mismatches(1) GGAAGTTCGGAGACATCTAGTGGAAGCGGCAAGCAGAGAAAACCTGCCAATCAAGATGAGTATGG___GGAGAGTCACACCGGGACAGCTCATGTCCTATATTCAGCTCTTCAAGAACAACCTCAA...TGAAACACCCACAGACTGCCAAGTGGGACAACTTTCTGGCTTTTGAAAGGCTCCTTCTTCAG|CCACGATATTTGCTGAAGTTTGAACAAATTTATCTTTCCAAGCCTACCCATTGGGAAAGAGATGGTGCTCCTTCACCAATGATGCCCAATGAAGCTAGATTAAGGAATCTCAC___GTATTCTGCTCCGCTTTATGTTGATATAACAAAAACAGTCATTAAAGAAGGTGAAGAACAACTTCAGACTCAGCATCAGAAAACTTTTATAGGAAAAATTCCAATTATGTTGCGGTCAACTTACTGCCTTTTGAATGGCTTGACAGATCGTGATCTTTGTGAGTTAAATGAATGCCCTTTGGATCCTGGTGGCTATTTCATT KHPQTAKWDNFLAFERLLLQ|PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21700 PDGFC::RXFP1 ENSG00000145431.11::ENSG00000171509.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3708 TRUE 1406 PDGFC ENSG00000145431.11 protein_coding - - chr4:156760454-156971799:- chr4:156850221:- chr4:157681606-157892951:- chr4:157771373:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158593401:+ chr4:159236463-159574524:+ chr4:159514553:+ chr4:156811416,chr4:156811419 chr4:158532980,chr4:158532977 NA NA chr4:157732568,chr4:157732571 chr4:159454132,chr4:159454129 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none CUB_domain(48%)|7_transmembrane_receptor_(rhodopsin_family)(100%),Leucine_rich_repeat(100%) CUB(0%)|7tm_1(100%),LRR_4(100%),LRR_5(100%),LRR_8(100%) 0 2 2 173 7 ENST00000502773.6 ENST00000307765.10 upstream upstream duplicates(1) ACG___GAGTACAAGATCCTCAGCATGAGAGAATTATTACTGTGTCTACTAATGGAAGTATTCACAGCCCAAGGTTTCCTCATACTTATCCAAGAAATACGGTC...TGGAGATTAGTAGCAGTAGAGGAAAATGTATGGATACAACTTACGTTTGATGAAAGATTTGGGCTTGAAGACCCAGAAGATGACATATGCAA|GAGACAACAATGGATGGTCTCTGCAATTTGACAAATATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAACACCTGAATGTT___TGGTCGGTTCTGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGATGAAACCAATTTACGAGCTGTTCCATCGGTTTCTTCAAATGTGACTGCAAT___GTCACTTCAGTGGAACTTAATAAGAAAGCTTCCTCCTGATTGCTTCAAGAATTATCATGATCTTCAGAAGCT___GTACC WRLVAVEENVWIQLTFDERFGLEDPEDDICk|rqqwmvsai* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21701 PDGFC::RXFP1 ENSG00000145431.11::ENSG00000171509.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3708 TRUE 1406 PDGFC ENSG00000145431.11 protein_coding - - chr4:156760454-156971799:- chr4:156850221:- chr4:157681606-157892951:- chr4:157771373:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158572698:+ chr4:159236463-159574524:+ chr4:159493850:+ chr4:156811416,chr4:156811419 chr4:158532980,chr4:158532977 NA NA chr4:157732568,chr4:157732571 chr4:159454132,chr4:159454129 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none CUB_domain(48%)|7_transmembrane_receptor_(rhodopsin_family)(100%),Leucine_rich_repeat(100%),Low-density_lipoprotein_receptor_domain_class_A(100%) CUB(0%)|7tm_1(100%),LRR_4(100%),LRR_5(100%),LRR_8(100%),Ldl_recept_a(100%) 1 0 2 173 0 ENST00000502773.6 ENST00000423548.5 upstream upstream none ACG___GAGTACAAGATCCTCAGCATGAGAGAATTATTACTGTGTCTACTAATGGAAGTATTCACAGCCCAAGGTTTCCTCATACTTATCCAAGAAATACGGTCTTGGTATGGAGATTAGTAGCAGTAGAGGAAAATGTATGGATACAACTTACGTTTGATGAAAGATTTGGGCTTGAAGACCCAGAAGATGACATATGCAA|TTTCTCATGGGGGTGGACAGGATGTCAAGTGCTCCCTTG GVQDPQHERIITVSTNGSIHSPRFPHTYPRNTVLVWRLVAVEENVWIQLTFDERFGLEDPEDDICn|fswgwtgcqvlp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21702 MCM3AP-AS1::LSS ENSG00000215424.10::ENSG00000160285.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2014 TRUE 3709 TRUE 1407 MCM3AP-AS1 ENSG00000215424.10 lncRNA + + chr21:46229196-46259390:+ chr21:46236326:+ chr21:47649110-47679304:+ chr21:47656240:+ LSS ENSG00000160285.15 protein_coding - - chr21:46188141-46228824:- chr21:46219572:- chr21:47608055-47648738:- chr21:47639486:- chr21:46240898 chr21:46220633 NA NA chr21:47660812 chr21:47640547 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Squalene-hopene_cyclase_C-terminal_domain(100%),Squalene-hopene_cyclase_N-terminal_domain(59%) |Prenyltrans(4%),SQHop_cyclase_C(100%),SQHop_cyclase_N(35%) 0 1 3 20 49 ENST00000669476.1 ENST00000356396.8 downstream downstream duplicates(2) CGGCCTCGTGCGCCGCGCTTTGAG___GACTTCCTAAAGCCAGTCCAGGAGCACAGTTTTTACCTGTTCAGTGGCACATATCTGTGATTGAAACTCTGTTTTTGCATCTTTAACCACTGAAGGAAGAATG|GTGGTGCTGTGGCCATCCCCTCCTGGGGGAAGTTCTGGCTGGCTGTCCTGAATGTTTACAGCTGGGAAGGCCTCAATACCCTGTTCCCAGAGATGTG___GCTGTTTCCTGACTGGGCACCGGCACACCCCTCCACACTCTGGTGCCACTGCCGGCAGGTGTACCTGCCCATGAGCTACTG...GCTGAGTGCCGCGGAAGACCCGCTGGTCCAGAGCCTCCGCCAG___GAGCTCTATGTGGAGGACTTCGCCAGCATTGACTGGCTGGCGCAGAGGAACAACGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21704 MCM3AP-AS1::LSS ENSG00000215424.10::ENSG00000160285.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3709 TRUE 1407 MCM3AP-AS1 ENSG00000215424.10 lncRNA + + chr21:46229196-46259390:+ chr21:46229266:+ chr21:47649110-47679304:+ chr21:47649180:+ LSS ENSG00000160285.15 protein_coding - - chr21:46188141-46228824:- chr21:46219572:- chr21:47608055-47648738:- chr21:47639486:- chr21:46240898 chr21:46220633 NA NA chr21:47660812 chr21:47640547 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Squalene-hopene_cyclase_C-terminal_domain(100%),Squalene-hopene_cyclase_N-terminal_domain(59%) |Prenyltrans(4%),SQHop_cyclase_C(100%),SQHop_cyclase_N(35%) 0 3 0 30 49 ENST00000590829.5 ENST00000356396.8 downstream downstream mismatches(1) GCCCGGCCTCGTGCGCCGCGCTTTGAG|GTGGTGCTGTGGCCATCCCCTCCTGGGGGAAGTTCTGGCTGGCTGTCCTGAATGTTTACAGCTGGGAAGGCCTCAATACCCTGTTCCCAGAGATGTG___GCTGTTTCCTGACTGGGCACCGGCACACCCCTCCACACTCTGGTGCCACTGCCGGCAGGT?TACCTGCCCATGcGCTACTGCTACGCCGTTCGGCTGAGTGCCGCGGAAGACCCGCTGGTCCAGAGCCTCCGCCAG___GAGCTCTATGTGGAGGACTTCGCCAGCATTGACTGGCTGGCGCAGAGGAACAACGTGGCCCCCGACG...GGACGttaCCtCCTCCtCTGCCTTCCAGGAGCATGTCTCCAGAATCCCGGACTATCTCTG___GATGGGCCTTGACGGCATGAAAATGCAG___GGCACCAACGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21705 MCM3AP-AS1::LSS ENSG00000215424.10::ENSG00000160285.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3709 TRUE 1407 MCM3AP-AS1 ENSG00000215424.10 lncRNA + + chr21:46229196-46259390:+ chr21:46229363:+ chr21:47649110-47679304:+ chr21:47649277:+ LSS ENSG00000160285.15 protein_coding - - chr21:46188141-46228824:- chr21:46219572:- chr21:47608055-47648738:- chr21:47639486:- chr21:46240898 chr21:46220633 NA NA chr21:47660812 chr21:47640547 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |Squalene-hopene_cyclase_C-terminal_domain(100%),Squalene-hopene_cyclase_N-terminal_domain(59%) |Prenyltrans(4%),SQHop_cyclase_C(100%),SQHop_cyclase_N(35%) 0 1 0 5 49 ENST00000662666.1 ENST00000356396.8 downstream downstream none CGCGGGTCGGAAGGAAGGACGTGGGGAGCGAGGCTCGAGCGAGCGACAGCGAGTGCGAAG|GTGGTGCTGTGGCCATCCCCTCCTGGGGGAAGTTCTGGCTG...CTCCGCGTGGTATATG___CGCTCCTCAACCTGTATGAGCACCACCACAGTGCCCACCTGCGGCAGCGGGCCGTGCAGAAGCTGTATGAACACATTGaGGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21706 PLEC::CCDC85C ENSG00000178209.17::ENSG00000205476.9 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3710 TRUE 1408 PLEC ENSG00000178209.17 protein_coding - - chr8:143915153-143976734:- chr8:143950184:- chr8:144989321-145050902:- chr8:145024352:- CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536088:- chr14:99966527-100070544:- chr14:100002425:- chr8:143945820 chr14:99536905 NA NA chr8:145019988 chr14:100003242 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Plectin/S10_domain(100%)| S10_plectin(100%)|Cyclin_C(100%),Cyclin_N(100%) 1 0 3 47 100 ENST00000322810.8 ENST00000380243.9 upstream downstream duplicates(1) CCAAGAAGGACCGGCGGCCCCGCAGCTTGCACCCCCATGTGCCCGGCGTCACCAACCTGCAGGTCATGCGTGCCATGGCGTCCCTGCGGGCACGGGGCCTG...TGCCGACGGAGGAGCAGCGGGTCTACCGTCGGAAGGAGCTTGAGGAGGTGTCACCTGAGAtCCCTGTGGTGCCTGCTACCACCCAGCGGACCCTGGCCAGGCCAGGCCCGGAGCCTGCCCCAGCCACAG|ATCCCTCATCCACCTACATCAGGCAACTGGAG PTEEQRVYRRKELEEVSPEiPVVPATTQRTLARPGPEPAPAT|dPSSTYIRQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Plectin 2 breast carcinoma epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 21707 PLEC::CCDC85C ENSG00000178209.17::ENSG00000205476.9 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3710 TRUE 1408 PLEC ENSG00000178209.17 protein_coding - - chr8:143915153-143976734:- chr8:143975177:- chr8:144989321-145050902:- chr8:145049345:- CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536088:- chr14:99966527-100070544:- chr14:100002425:- chr8:143945820 chr14:99536905 NA NA chr8:145019988 chr14:100003242 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none |Cyclin_C(100%),Cyclin_N(100%) 1 2 1 134 100 ENST00000436759.6 ENST00000380243.9 upstream downstream duplicates(1) AGTCTGGCTGCGGCGGCAGAGCTGAAGTGAGCGGAGCCACCAG___GAGGCCATGTCGGGTGAGGACGCTGAGGTCCGGGCAGTCTCTGAAGATGTCTCCAATGGAAGCAGTGGCTCGCCC...CGCAGCGGGGGTGGCGCTGGGAGCAACGGGAGTGTCCTGGACCCAGCTGAGCGGGCGGTCATTCGCATCGCAG|ATCCCTCATCCACCTACATCAGGCAACTGGAGAGCAAAGTGAGGCTGCTGGAGGGTGACAAGCTCCTCGCACAG___CAGGCAGGCTCCGGAGAGTTCCGCACGCTGCGGAAAGGCTTCTCGCCCTACCACTCGGAGTCCCAGCTTGCGTCCC RSGGGAGSNGSVLDPAERAVIRIA|dPSSTYIRQLESKVRLLEGDKLLAQQAGSGEFRTLRKGFSPYHSESQLAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Plectin 2 breast carcinoma epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 21711 DGAT2::CARD17P ENSG00000062282.15::ENSG00000255221.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DGAT2 ENSG00000062282.15 protein_coding + + chr11:75759512-75801535:+ chr11:75773817:+ chr11:75470557-75512580:+ chr11:75484862:+ CARD17P ENSG00000255221.5 transcribed_unprocessed_pseudogene - - chr11:105092486-105101414:- chr11:105092584:- chr11:104963213-104972141:- chr11:104963311:- chr11:75777622 chr11:105093397 NA NA chr11:75488667 chr11:104964124 NA NA sense sense unknown exon exon/splice-site inversion high none none none 0 1 1 3 218 ENST00000605608.1 ENST00000638172.1 downstream downstream duplicates(1) CTGGGAGATGGG___CTGCAGTCCCTGCGTTTGAGGAAGTGAGACCAGGGGGATGTACACAAGATGACTGTGCAGAGTGATCTGAGCAATGACAGGAAAGACTGCCAAGAG|GTTCAACTTTCATTTGAGCAGCCAGATGATAAAGCACAGATGCCCAGCACTGAAAGAGTTACTTCGACAAGACGTTTCTATCTCTTCCCAGTACATTAAAATAAGGAAGCTGTATGAATGTCTGAGGGCCGGTATGTGTGTGTGGTCAGGAGTGTGGGAAGGTTGAGTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21717 GIGYF2::DNER ENSG00000204120.16::ENSG00000187957.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2015 FALSE NA FALSE NA GIGYF2 ENSG00000204120.16 protein_coding + + chr2:232697299-232860605:+ chr2:232697392:+ chr2:233562009-233725315:+ chr2:233562102:+ DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229477253:- chr2:230222345-230579271:- chr2:230341969:- chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534 chr2:229578357,chr2:229578359,chr2:229578376,chr2:229578382,chr2:229578395,chr2:229578396 NA NA chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244 chr2:230443073,chr2:230443075,chr2:230443092,chr2:230443098,chr2:230443111,chr2:230443112 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |EGF-like_domain(83%),Human_growth_factor-like_EGF(100%) |DNER_C(100%),EGF(71%),EGF_CA(100%),hEGF(62%) 0 20 0 85 42 ENST00000373563.9 ENST00000341772.5 downstream downstream duplicates(6),mismappers(1) GGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAG|GTTATACTGGAGAGCTTTGCCAGTCCAAGATTGATTACTGCATCCTAGACCCATGCAGAAATGGAGCAACATGCATTTCCAGTCTCAGTGGATTC?CCTGCCAGTGTCCAGAAG___GATACTTCGGATCTGCTTGTGAAGAAAAGGTGGACCCCTGCGCCTCGTCTCCGTGCCAGAACAACGGCACCTGCTATGTGGACGGGGTACACTTTACCTGCAACTGCAGCCCGGGCTTCACAGGGCCGACCTGTGCCCAGCTTATTGACTTCTGTGCCCTCAGCCCCTGTGCTCATGGCACGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21718 SLC39A11::LINC00511 ENSG00000133195.12::ENSG00000227036.10 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72712798:- chr17:70642088-71088851:- chr17:70708937:- LINC00511 ENSG00000227036.10 lncRNA - + chr17:72290091-72640472:- chr17:72601183:+ chr17:70286232-70636611:- chr17:70597322:+ chr17:72707230,chr17:72707232 chr17:72596860,chr17:72596858 NA NA chr17:70703369,chr17:70703371 chr17:70592999,chr17:70592997 NA NA sense antisense unknown 3'UTR intron inversion/5'-5' medium none ZIP_Zinc_transporter(65%)| Zip(85%)| 1 0 19 8 5 ENST00000581581.1 unknown upstream upstream duplicates(3) CAACGTTCCAG___AGGGTCTCGCTGTTGGAGTTGGATTTGGGGCTATAGAAAAGACGGCATCTGCTACCTTTGAGAGTGCCAG___...CAGAATAAGGAGCGATGCTGAAGTCATGCACCCCAGAAAG___GGTCTTGAACTTGGTTTCCTGCCCTGGACTTAACCTGCCTTCCTGACACCGACTGACTTCACCTCTCCCCATGCCCTCATGTCATGTCTTATCTGTTCCTATTGTGGATCCGGGATTCCTTGGCCTGTCCCTTGGCCTGCTGCTGATCATATCTCCACTCTGACCCACAATATAGATTTTCAAG|CCTGGTGCAGGTCCTACAACCgCACACTGTGATGACCCCACCACCACCcCCGTTGCTCACACCATCCCATCTGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21720 MTO1::CD109 ENSG00000135297.17::ENSG00000156535.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3712 TRUE 1409 MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73497896:+ chr6:74171301-74218959:+ chr6:74207619:+ CD109 ENSG00000156535.15 protein_coding + + chr6:73695785-73828316:+ chr6:73722289:+ chr6:74405508-74538040:+ chr6:74432012:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through medium none Glucose_inhibited_division_protein_A(100%),tRNA_modifying_enzyme_MnmG/GidA_C-terminal_domain(91%)|A-macroglobulin_TED_domain(100%),A-macroglobulin_receptor_binding_domain(100%),Alpha-2-macroglobulin_bait_region_domain(100%),Alpha-2-macroglobulin_family(100%),MG2_domain(100%),Macroglobulin_domain_MG3(100%) FAD_binding_2(100%),FAD_oxidored(100%),GIDA(100%),GIDA_C(85%)|A2M(100%),A2M_BRD(100%),A2M_recep(100%),MG2(100%),MG3(100%),TED_complement(100%) 4 3 7 252 15 ENST00000498286.6 ENST00000437994.6 downstream upstream duplicates(2) ATTGAGTTTTTGAGCTCTAAATGGAAAAAATTAATCCCAGAGGCTTCTATAAGTACTAGTAGAAGTCTGCCTGTCAG___AGCTCTCGATGTTCTGAAGTATGA...ATTAGCCAAGGCTGTTCCAGAGCCCTTGAAGAAGTATACTAAATGTAGAGAGCTGGCTGAAAGACTGAAAATAGAAG___CCACTTATGAATCAGTGTTGTTCCATCAACTACAAGAAATAAAGGGAGTTCAGCAAGATGAAGCTCTCCAACTGCCAAAAGACCTAGATT...TATCAGGGATGTGTCTTTGTCCCATGAAGTTCGAGAGAAACTACATTTTAGTCGTCCACAGACG|GTATCAACATACGTATTCCTTATAACCACCTCATGAGATTGATATGATTATTAGCATCCTCATCTTATGGATGAAAAAAATTGAGCTAGAGAATCAG___GCTCTTTTAAGACACTTACTCTTCCATCA___CTACCTCTGAACAGTGCAGATGAGATTTATGAGCTACGTGTAACCGGACGTACCCAGGATGAGATTTTATTCTCTAATAGTACCCGC...CAAGGCCTTATACAAGCCAAAGCAAGAAGTGAAGTTTCGCATTGTTACACTCTTCTCAGATTTTAAGCCTTACAAAACCTCTTTAAACATTCTCATTAAG___GACCCCAAATCAAATTTGATCCAACAGTGGTTGTCtCAACAAAGTGATCTTGGAGTCATTTCCAAAACTTTTCAGCTATC IRDVSLSHEVREKLHFSRPQT|vstyvflitts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21721 MTO1::CD109 ENSG00000135297.17::ENSG00000156535.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2017 TRUE 3712 TRUE 1409 MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73497896:+ chr6:74171301-74218959:+ chr6:74207619:+ CD109 ENSG00000156535.15 protein_coding + + chr6:73695785-73828316:+ chr6:73723251:+ chr6:74405508-74538040:+ chr6:74432974:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Glucose_inhibited_division_protein_A(100%),tRNA_modifying_enzyme_MnmG/GidA_C-terminal_domain(91%)|A-macroglobulin_TED_domain(100%),A-macroglobulin_receptor_binding_domain(100%),Alpha-2-macroglobulin_bait_region_domain(100%),Alpha-2-macroglobulin_family(100%),MG2_domain(100%),Macroglobulin_domain_MG3(100%) FAD_binding_2(100%),FAD_oxidored(100%),GIDA(100%),GIDA_C(85%)|A2M(100%),A2M_BRD(100%),A2M_recep(100%),MG2(100%),MG3(100%),TED_complement(100%) 2 3 4 252 180 ENST00000498286.6 ENST00000437994.6 downstream upstream duplicates(6) CTGTGTGTCCCAACAACGATATGAAAGAGCTTGTTGGATGAAGTCTTCTTTAGAAGAAGGCATTTCTGTGTTGAAATCTATTGAGTTTTTGAGCTCTAAAT...TAGAAGTCTGCCTGTCAG___AGCTCTCGATGTTCTGAAGTATGAGGAAGTTGACATGGATTCATTAGCCAAGGCTGTTCCAGAGCCCTTGAAGAAGTATACTA...ATTTGACTATCAGGGATGTGTCTTTGTCCCATGAAGTTCGAGAGAAACTACATTTTAGTCGTCCACAGACG|GCTCTTTTAAGACACTTACTCTTCCATCA___CTACCTCTGAACAGTGCAGATGAGATTTATGAGCTACGTGTAACCGGACGTACCCAGGATGAGATTTTATTCTCTAATAGTACCCGCTTATCATTTGAGACCAAGAGAATATCTGTCTTCATTCAAACAGACAAGGCCTTATACAAGCCAAAGCAAGAAGTGAAGTTTCGCA...TTGAAGTGACTTTGCAGACACCATTATATTGTTCTATGAATTCTAAGCATTTAAATGGTACCATCACGGCAAA___GTATACATATGGGAAGCCAGTGAAAGGA LTIRDVSLSHEVREKLHFSRPQT|allrhllfhhyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21725 RNF4::ENSG00000290180 ENSG00000063978.17::ENSG00000290180.1 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF4 ENSG00000063978.17 protein_coding + + chr4:2462220-2515857:+ chr4:2500738:+ chr4:2463947-2517584:+ chr4:2502465:+ ENSG00000290180 ENSG00000290180.1 protein_coding + + chr4:2512477-2625320:+ chr4:2596084:+ chr4:2514204-2627047:+ chr4:2597811:+ chr4:2510000,chr4:2510000,chr4:2510000,chr4:2512904 chr4:2523032,chr4:2523023,chr4:2523003,chr4:2518132 NA NA chr4:2511727,chr4:2511727,chr4:2511727,chr4:2514631 chr4:2524759,chr4:2524750,chr4:2524730,chr4:2519859 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 6 1 5 210 18 ENST00000541204.5 ENST00000703446.1 downstream upstream duplicates(6),mismatches(3) CATCTTTCTCGAGGAGCTCTCCTGGGCGGCTGAAGAAGGAGCTTCTTCTCCGGAGTGCGCCGGCGGTGGCGCCTGCGGACCTAACTAGCTCCAGGTTAGGC...GCG___GACTTGAAAATACTGGAAATCTGTCCGGATCCAAATTATTTTGCAAGCCAGATGAGTAACCAGAGGGCATGAAAGGTTGAGAACATTTGACTTCCCTGCAAACCTTGGTATAGATCACTTCCTTTTCTGTAGGAAAGGAAAGGCACCAAAGAGCACAATGAGTACA___AGAAAGCGTCGTGGTGGAGCAATAAATTCTAGACAAGCTCAGAAGCGAACTCGGGAAGCAACCTCCACCCCCGAGATCTCCTTGGAAGCAGAACCCATAGAACTCGTGGAAACTG___CTGGAGATGAAATTGTGGACCTCACTTGTGAATCTTTAGAGCCTGTGGTGGTTGATCTGACTCACAATGACTCTGTTGTG|ACTCCTTTTAGTTTTGGCATGAATCATAGGACACCACCCTACCCTGCTGGGGATTATTGTCTTCTGTGCAGAAGTGAACGGAAAGACTCATCATTCTTAGAGAGTGGAATTAAGACTGCGAGCAAATTGGCCCTTTCCATGGCTCCCAAGGGCAACAGCGTGCTGCcCCTGCCACTGTGGGTGTGCCCGGACTGCCGCAGGACCGTGGAGAAGGAGGAGAGGCATGGCG MSTRKRRGGAINSRQAQKRTREATSTPEISLEAEPIELVETAGDEIVDLTCESLEPVVVDLTHNDSVV|tpfsfgmnhrtppypagdycllcrserkdssflesgiktasklalsmapkgnsvlplplwvcpdcrrtvekeerhg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21729 NUP205::SLC13A4 ENSG00000155561.15::ENSG00000164707.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP205 ENSG00000155561.15 protein_coding + + chr7:135557917-135648757:+ chr7:135578915:+ chr7:135242665-135333505:+ chr7:135263663:+ SLC13A4 ENSG00000164707.16 protein_coding - + chr7:135681231-135729258:- chr7:135707035:+ chr7:135365979-135414006:- chr7:135391783:+ chr7:135579443 chr7:135706051 NA NA chr7:135264191 chr7:135390799 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Nuclear_pore_complex_scaffold__nucleoporins_186/192/205(20%)| Nup192(13%)| 4 3 3 226 24 ENST00000285968.11 unknown downstream upstream duplicates(3),mismatches(1) CACAGATTGATGTGAATAATGAGTTTGAGAAACTACAGCGAGAGAGAGGgTTGGGCAGTGAAAAACATCGCAAAGAG___GTTTCTGATCTCATTAAGGAGTG...CTCTCCTCCTCATTGGACATTTGGAAAGAGTGACAGTTGAGGCTAATGGCTCACTGGATGCAGTGAATCTGGCTCTTCTTATGGCGCTTCTATACTGTTTTGATATCAGTTTTATAGAGCAAAGCACAGAGGAACGAGAT...GATTCATCAACTTCCACTGTTGACAGAAAAACAGTACATTGCAACAATTCACTCTCGTCTTCAGGACTCACAGCTTTGGAAACTGCCTGGGCTCCAAGCCACTGTTAGACTTGCCTGGGCGCTGGCATTGAGGGGAATATCCCAGCTACCTGATGTGACAG|GTGGAATCACTGACTTTGCACAACTTGGGGACAGTACGTTTATCATGTGGACTCCATTGGCTGACAGCGACTTGACTTTGCCAATTCTGaACCTACACGG___GCCCTCTCCCTGGACGGGTCCTATGGCTCTGGTGTCAGCCCGACCCTTTGGTAAAAAAACAGCTGAAGTGGACATCCCGCAGTGACCTGAG IHQLPLLTEKQYIATIHSRLQDSQLWKLPGLQATVRLAWALALRGISQLPDVT|ggitdfaqlgdstfimwtpladsdltlpilnlhgpspwtgpmalvsarpfgkktaevdipq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21756 MBOAT2::KIDINS220 ENSG00000143797.12::ENSG00000134313.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2020 FALSE NA FALSE NA MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8943187:- chr2:8992820-9143838:- chr2:9083316:- KIDINS220 ENSG00000134313.17 protein_coding - - chr2:8721081-8837630:- chr2:8791224:- chr2:8861211-8977760:- chr2:8931354:- chr2:8925114 chr2:8792106 NA NA chr2:9065244 chr2:8932236 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none MBOAT__membrane-bound_O-acyltransferase_family(17%)|KAP_family_P-loop_domain(100%) MBOAT(15%)|KAP_NTPase(100%) 2 1 3 203 111 ENST00000305997.8 ENST00000569008.2 upstream downstream duplicates(5),mismatches(1) AACGCCGTGCAGCTGCCCATCGACCAG___GTCAACTTTGTAGTGTGCCAACTCTTTGCCTTGCTAGCAGCCATTTGGTTTCGAACTTATCTACATTCAAGCAAAACTAGCTCTTTTATAAGACATGTAGTTGCTACCCTTTTGGGCCTTTATCTTGCACTTTTTTGCTTTGGATG___GTATGCCTTACACTTTCTTGTACAAAGTGGAATTTCCTACTGTATCATGATCATCATAGGAGTGGAGAACATGCACAA|GACACTTGTCTCCTACTGAAACAGACGGTGACATGCTTGGATATGATTTATATAGCAGTGCCCTGGCAGATATTCTCAGTGAGCCTACCATGCAGCCACCCATTTGTGTGGGGTTATATGCACAGTGGGGAAGTGGGAAATCTTTCTTACTCAAGAAACTAGAAG___ACGAAATGAAAACCTTCGCCG...CTTGGAATAGCAGTGTCACTGAGCTTCTTGGCTCTCTTATATATATTCTTTA___TTGTCATTTACTTTGGTGGACGAAGAGAAGGAGAGAGTTGGAATTGGGC NAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSFIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMIIIGVENMHk|tlvsy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21757 MYO5B::ACAA2 ENSG00000167306.21::ENSG00000167315.18 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MYO5B ENSG00000167306.21 protein_coding - - chr18:49822789-50195164:- chr18:49894941:- chr18:47349159-47721534:- chr18:47421311:- ACAA2 ENSG00000167315.18 protein_coding - - chr18:49782164-49813953:- chr18:49797594:- chr18:47308534-47340323:- chr18:47323964:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%)|Thiolase__C-terminal_domain(100%),Thiolase__N-terminal_domain(78%) IQ(100%),Myosin_head(100%)|Thiolase_C(100%),Thiolase_N(53%) 2 2 2 41 443 ENST00000285039.12 ENST00000285093.15 upstream downstream duplicates(1) AGGTACTGCCGGGGACACCTGGCCCGCAG___GCTGGCTGAGCACCTGCGGAGGATCAGAGCGGCTGTGGTGCTCCAGAAACATTACCGCATGCAGAGGGCCCG...GTGCCTTCCGGATGCTCAAGGCCAGGCGGGAGCTGAAGaCCCTCAGGATTGAGGCCCGCTCAGCAGAGaATCTGAAAaGTCTCAACGgGGGCATGGAGAA...CAGCTGCAGCGGAAGATCGATGAGCAG___AACAAAGAGTTCAAGACACTTTCAGAGCAGTTGTCCGTGACCACCTCAACATACACCATGGAGGTAGAGCGGCTGAAGA...CCTGCGCACAGAGCTGCAGAGGGCCCACTCGGAGCGCAAGATCTTGGAGGACGCCCACAGCAGGGAGAAAGATGAGCTGAGGAAG|AGTTCTTCAGATGCTATATATTTGGCAAGGCATGTTGGTTTGCGT...GTTCTGGTTTTCAGTCCATTGTGAATGGATGTCAG___GAAATTTGTGTTAAAGAAGCTGAAGTTGTTTTATGTGGAGGAACCGAAAGCATGAGCCAAGCTCCC...ATCATTAACAGATCAGCATGTCCAGCTCCCCATGGCAATGACTGCAGAGAATCTTGCTGTAAAACACAAAATAAGCAGAGAAGAATGTGACAAATATGC LRTELQRAHSERKILEDAHSREKDELRK|SSSDAIYLARHVGL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4320 chr18:50126499-50126563:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21758 ESCO1::GREB1L ENSG00000141446.11::ENSG00000141449.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ESCO1 ENSG00000141446.11 protein_coding - - chr18:21529284-21600884:- chr18:21560859:- chr18:19109245-19180845:- chr18:19140820:- GREB1L ENSG00000141449.16 protein_coding + - chr18:21242232-21526112:+ chr18:21459634:- chr18:18822193-19106073:+ chr18:19039595:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none zinc-finger_of_acetyl-transferase_ESCO(100%)| zf-C2H2_3(100%)| 2 0 3 74 9 ENST00000383276.1 unknown upstream downstream mismappers(1) CAAATAAG___AATTTCAGCCAATGTTTGGAATCCAAGCTAGAAAACAGTCCAGTGGAAAATGTTACTGCTGCTTCGACTCTGCTCAGTCAAGCAAAAATTGAT...CACCACGAAATCATTCTTTGCCTAAGTGTAATTCCCATTTGGAGATAACAATTCCAAAGGACTTGAAACTAAAAGAAGCAGAGAAAACTGATGAAAAACAGTTGATTATA___GATGCAGGACAAAAAAGATTTGGAGCAGTTTCTTGTAATGTTTGTGGAATGCTGTATACAGCTTCAAATCCAGAAGATGAAACACAGCATCTGCTTTTCCACAACCAGTTTATAAGTGCTGTTAAATATGTG|AAGAAAGCTCTGCCACAAGAAAATCTGTTTTTAGAAACTGAGAATGCCGGCCATGCGCGGTGGCTCACTCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCCCCTTGAGGTCAGGAGTTCAAGACAAGCCTGGCCAACATGGTGAAACCCTGCCTCTATTAAAA PRNHSLPKCNSHLEITIPKDLKLKEAEKTDEKQLIIDAGQKRFGAVSCNVCGMLYTASNPEDETQHLLFHNQFISAVKYV|kkalpqenlfletenagharwltpvipalweaevgrsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21763 PTPN13::AFF1 ENSG00000163629.13::ENSG00000172493.23 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3716 TRUE 1410 PTPN13 ENSG00000163629.13 protein_coding + + chr4:86594315-86815171:+ chr4:86693674:+ chr4:87515468-87736324:+ chr4:87614827:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:86973830:+ chr4:87856154-88062191:+ chr4:87894982:+ chr4:86696969,chr4:86696669 chr4:86965283,chr4:86965243 NA NA chr4:87618122,chr4:87617822 chr4:87886435,chr4:87886395 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Kinase_non-catalytic_C-lobe_domain(100%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(100%),AF4_interaction_motif(100%) KIND(100%)|AF-4(100%),AF-4_C(100%),AF4_int(100%) 0 1 3 54 1 ENST00000436978.5 ENST00000511996.5 downstream upstream duplicates(1) AAAAGGATTACCAACAG|ATACTTATTGAAGATCTGCTGTCAGATGATGCCTTAAAATCTGATAGATCAAAGATGACCTATGGGAGAGAATACGAGAATAGA...TGTTTAACCTGGCAGATAAGCACACAGCCAGATTGTGAAACAATGTGATAAACGCTCTAGCAGAAGAGCAAATAAAGTGTTAAAGGATCATAGAAAACAG KGLPT|dty* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 13 1 Yes lung, NSCLC, gastric, peritoneal carcinomatosis hepatocellular Familial Hepatocellular Carcinoma epithelial TSG missense, nonsense TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 21764 PTPN13::AFF1 ENSG00000163629.13::ENSG00000172493.23 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3716 TRUE 1410 PTPN13 ENSG00000163629.13 protein_coding + + chr4:86594315-86815171:+ chr4:86693674:+ chr4:87515468-87736324:+ chr4:87614827:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87046166:+ chr4:87856154-88062191:+ chr4:87967318:+ chr4:86696969,chr4:86696669 chr4:86965283,chr4:86965243 NA NA chr4:87618122,chr4:87617822 chr4:87886435,chr4:87886395 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Kinase_non-catalytic_C-lobe_domain(100%)|AF-4_proto-oncoprotein_C-terminal_region(100%),AF-4_proto-oncoprotein_N-terminal_region(100%),AF4_interaction_motif(100%) KIND(100%)|AF-4(100%),AF-4_C(100%),AF4_int(100%) 1 1 1 54 28 ENST00000436978.5 ENST00000395146.9 downstream upstream mismappers(1) TGATTATGAAGTGCCTCAGAGCCAA___CCTATTAAGCTTGGAGATCATCTCAACAGCATACTGCTTGGAATGTGTGAGGATGTTATTTACGCTCGAGTTTCTG...TTGCAGTGCCCACATTAGGAATAGCAATTGTGCACCCTCATTTTCCTACGTGAAACACTTGGTAAAACTGGTTCTGGGAAATCTTTCTGGG___ACAGATCAGCTTTCCTGTAACAGTGAACAAAAGCCTGATCGAAGCCAGGCTATTCGAGATCGATTGCGAGGAAAAGGATTACCAACAG|TTTGTACAATGACGACAGAAACCTGCTTCGAATTAGAGAGAAGGAAAGACGCAACCAGGAAGCCCACCAAGAGAAAGAGGCATTTCCTGAAAAGATTCCCCTTTTTGGAGAGCCCTACAAG___ACAGCAAAAGGTGATGAGCTGTCTAGTCGAATACAGAACATGTTGGGAAACTACGAAGAAGTGAAGGAGTTCCTTAGTACTAAGTCTCA CSAHIRNSNCAPSFSYVKHLVKLVLGNLSGTDQLSCNSEQKPDRSQAIRDRLRGKGLPT|vctmttetcfelerrkdatrkptkrkrhflkrfpflesptrqqkvmsclveyrtcwettkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 13 1 Yes lung, NSCLC, gastric, peritoneal carcinomatosis hepatocellular Familial Hepatocellular Carcinoma epithelial TSG missense, nonsense TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 21769 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3717 TRUE 1411 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)| Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 0 3 1 1319 1745 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(4) AAGATACTGAATTGGCTGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGG...CTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGC...GGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAA AWRHNIMDFAMPYFIQVMKEYLTK|CCPRHRSISAEAISGVPGGSTAEASPQKRNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 21770 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3717 TRUE 1411 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59666977:+ chr17:57697045-57774317:+ chr17:57744338:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(16%)| Clathrin(10%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 0 1 0 837 2268 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(2) ATGAACAACTGTCAACTCAGTCTCTGATTGAACTTTTTGAATCTTTCAAGAGTTTTGAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGT...GGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGG EQLSTQSLIELFESFKSFE|gRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 21772 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 1 1 2 2 196 ENST00000503441.1 ENST00000265070.7 upstream downstream duplicates(2) GGGCTGCACAGCAGGTGAGCAGTGGGTGAGTGAGCAAAGCTTCCTCTGTTCACAGCCTCTCACCGTCACTCACACTACCACCTGAGCTCTGCCTCCTGTCA...CAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATGAGACGTAAAAGTCTATTAACAAGAAAG___GTAATCTGTAAGTCAGATGCTCCAACAGGGGATGTTCTTCTTGATGAAGCTCTGAAGCATGTTAAGGAAACTCAG...ACTGGATTGAATTACTTAGTG___GTGAGcCATGGAATCCATTAAAATTGCATTATCAGTTAAGAAATGTACGGGAACGATTAGCTAAAAACCTGGTGGAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 21773 TSPAN4::MOB2 ENSG00000214063.12::ENSG00000182208.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TSPAN4 ENSG00000214063.12 protein_coding + + chr11:842812-867116:+ chr11:864864:+ chr11:842812-867116:+ chr11:864864:+ MOB2 ENSG00000182208.15 protein_coding - + chr11:1469457-1501247:- chr11:1489667:+ chr11:1490687-1522477:- chr11:1510897:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/5'-5' low none Tetraspanin_family(46%)| Tetraspanin(89%)| 0 0 3 4 6 ENST00000464987.5 unknown downstream upstream duplicates(2) TGCTACCCCACCCGGAGGGTGCGCCCCAGGTTGTCCCCCGCCCTCTGACGCAGCGTCCTGAGCCGTCTGCTCCCAGCGCCCCATCCGGGCCGCGCACCGTGGGGTTCTgCTCTGTAGAGCGGCCTCTTCTTGGTCACT...|...TATATTCAGCCATTTGTTTATATTGGGATGAAGTCCTGGCTATTGAGGtTGCACTCCGAGCTAGAACACAACACTACTTTGTTTTGTGAATCACACTGTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21776 MYO5B::ENSG00000266997 ENSG00000167306.21::ENSG00000266997.2 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MYO5B ENSG00000167306.21 protein_coding - - chr18:49822789-50195164:- chr18:49894941:- chr18:47349159-47721534:- chr18:47421311:- ENSG00000266997 ENSG00000266997.2 protein_coding - - chr18:49795793-49837623:- chr18:49797594:- chr18:47322163-47363993:- chr18:47323964:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through low none IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(100%)| IQ(100%),Myosin_head(100%)|Thiolase_N(53%) 2 1 0 41 443 ENST00000285039.12 ENST00000590532.2 upstream downstream none AGGTACTGCCGGGGACACCTGGCCCGCAG___GCTGGCTGAGCACCTGCGGAGGATCAGAGCGGCTGTGGTGCTCCAGAAACATTACCGCATGCAGAGGGCCCG...GTGCCTTCCGGATGCTCAAGGCCAGGCGGGAGCTGAAGaCCCTCAGGATTGAGGCCCGCTCAGCAGAGaATCTGAAAaGTCTCAACGgGGGCATGGAGAA...TGCGCACAGAGCTGCAGAGGGCCCACTCGGAGCGCAAGATCTTGGAGGACGCCCACAGCAGGGAGAAAGATGAGCTGAGGAAG|AGTTCTTCAGATGCTATATATTTGGCAAGGCATGTTGGTTTGCGT...GTTCTGGTTTTCAGTCCATTGTGAATGGATGTCAG___GAAATTTGTGTTAAAGAAGCTGAAGTTGTTTTATGTGGAGGAACCGAAAGCATGAGCCAAGCTCCC RTELQRAHSERKILEDAHSREKDELRK|sssdaiylarhvgl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4320 chr18:50126499-50126563:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21791 LDLR::SOAT2 ENSG00000130164.15::ENSG00000167780.12 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11111639:+ chr19:11200094-11244496:+ chr19:11222315:+ SOAT2 ENSG00000167780.12 protein_coding + - chr12:53103486-53124535:+ chr12:53107334:- chr12:53497270-53518319:+ chr12:53501118:- chr19:11112783,chr19:11112782 chr12:53109057,chr12:53109058 NA NA chr19:11223459,chr19:11223458 chr12:53502841,chr12:53502842 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(44%),Low-density_lipoprotein_receptor_domain_class_A(100%)| EGF_CA(100%),FXa_inhibition(63%),Ldl_recept_a(100%),cEGF(100%),hEGF(100%),zf-NF-X1(100%)| 301 303 299 5523 5153 ENST00000559340.2 unknown downstream downstream duplicates(148),mismatches(144),multimappers(1) CGATGAAGTTGGCTGCGTTAATG___TGACACTCTGCGAGGGACCCAACAAGTTCAAGTGTCACAGCGGCGAATGCATCACCCTGGACAAAGTCTGCAACATGGCTAGAGACTGCCGGGACTGGTCAGATGAACCCATCAAAGAGTGCG___GGACCAACGAATGCTTGGACAACAACGGCGGCTGTTCCCACGTCTGCAATGACCTTAAGATCGGCTACGAGTGCCTGTGCCCCGACGGCTTCCAGCTGGTGGCCCAGCGAAGATGCGAAG___ATATCGATGAGTGTCAGGATCCCGACACCTGCAGCCAGCTCTGCGTGAACCTGGAGGGTGGCTACAAGTGCCAGTGTGAGGAAGGCTTCCAGCTGGACCCCCACACGAAGGCCTGCAAGGCTGTGG|GTGCTGCCTCCAAGGCCCCGAAACAGAGAGTGCTACTGCGAACAAATCAACCTCTTCCACTCCACTGCTGCTTTTGGTGCCCCATAACGACGACCCCCTCTCAGCAGGAAGTAGCCAGAAAGATTACGACTCCCCATCTCCCTGCGATTCTCATGATAAATAAATATCCATGCATGATAAAAATCGTGTAAATTGACAGTGGGGACTGTGACAAGCAGGTCTCACTAATGCAGACCTCCATAACAACTGTTTCAGTACTGACTGAGTGGTTAAGTTAAATGTTAAAAACCAGTGCCCTTATACAAAGGCTGGAATGTAACAAAAGCCCACCAAGAGTTTTGCCTAGGCCTTTCCTGAACCTCAAAG DEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV|gaaskapkqrvllrtnqplplhccfwcpitttpsqqevarkittphlpailminkypcmikiv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21797 TYW3::CRYZ ENSG00000162623.16::ENSG00000116791.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3718 FALSE NA TYW3 ENSG00000162623.16 protein_coding + + chr1:74733152-74766678:+ chr1:74733418:+ chr1:75198836-75232362:+ chr1:75199102:+ CRYZ ENSG00000116791.14 protein_coding - - chr1:74705482-74733408:- chr1:74706994:- chr1:75171166-75199092:- chr1:75172678:- chr1:74736750,chr1:74736751 chr1:74709477,chr1:74709476 NA NA chr1:75202434,chr1:75202435 chr1:75175161,chr1:75175160 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Methyltransferase_TYW3(26%)|Zinc-binding_dehydrogenase(70%) TYW3(0%)|ADH_zinc_N(6%),ADH_zinc_N_2(17%) 1 0 18 325 504 ENST00000370867.8 ENST00000417775.5 downstream downstream duplicates(4),mismatches(1) GCTACCATGAAGGAGCCGAGCGCAGACCCTGAGTCCGTCACCCATGGATCGCAGCGCGGAGTTCAGGAAATGGAAGGCGCAATGTTTGAGCAAAGCGGACCTCAGCCGGAAGGGCAGTGTTGACGAGGATGTGGTAGAGCTTGTGCAGTTTCTGAACATGCGAGATCAGTTTTTCACCACCAGCTCCTGCGCTGGCCGCATCCTACTCCTTGACCGG|GTTGTTGGCAGCAGAGGTACTATTGAAATAAACCCACGAGACACCATGGCAAAGGAGTCGAGTATAATTGGAGTTACTCTCTTTTCCTCAACCAAG___GAGGAATTTCAGCAATATGCAGCAGCCCTTCAAGCTGGAATGGAAATTGGCTGGTTGAAACCTGTGATAGGTTCTCA MDRSAEFRKWKAQCLSKADLSRKGSVDEDVVELVQFLNMRDQFFTTSSCAGRILLLDR|VVGSRGTIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21802 NME7::ENSG00000231424 ENSG00000143156.14::ENSG00000231424.3 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NME7 ENSG00000143156.14 protein_coding - - chr1:169132531-169367948:- chr1:169287303:- chr1:169101769-169337186:- chr1:169256541:- ENSG00000231424 ENSG00000231424.3 lncRNA - + chr1:170748573-171251857:- chr1:170891339:+ chr1:170717714-171220996:- chr1:170860480:+ chr1:169271522,chr1:169271527,chr1:169271533 chr1:170887074,chr1:170887069,chr1:170887069 NA NA chr1:169240760,chr1:169240765,chr1:169240771 chr1:170856215,chr1:170856210,chr1:170856210 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Nucleoside_diphosphate_kinase(54%)| NDK(21%)| 16 4 28 152 35 ENST00000472647.5 unknown upstream upstream duplicates(4),mismatches(1) AAAGACTGCTGGGACCTGCAAACTCTGGAGTGGCACGCACAGATGCTTCTGAAAGCATTAGAGCCCTCTTTGGAACAGATGGCATAAGAAATGCAGCGCATGGCCCTGATTCTTTTGCTTCTGCGGCCAGA___GAAATGGAGTTGTTTTTTCCTTCAAGTGGAGGTTGTGGGCCGGCAAACACTGCTAAATTTACTAATTGTACCTGTTGCATTGTTAAACCCCATGCTGTCAGTGAAG|GATCAAAGCAAGTCACATGGCCAAGCCCAAAGTCTATGAAGCAAGAAAATACACTCCACCAATGATGGGGCTATGACTAAATATGGAAGCAAGAAAGTGTGAAGAATGGGAGCCAATCTTTCAGCCTACCACTCTGAATCACTCCCAATCCTAAGCTAAAAATGCTCTCACCTGCAGAACTTGACGTTTCTCTATTGAAAGGATATTTCTTCACTTTTTAAGATCATTCAAGGGGGTTCTAAACCCCCTACACTTCTTCC RLLGPANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKPHAVSE|gskqvtwpspksmkqentlhq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21809 AP3S2::ARPIN-AP3S2 ENSG00000157823.17::ENSG00000250021.7 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3721 TRUE 1412 AP3S2 ENSG00000157823.17 protein_coding - - chr15:89830599-89894638:- chr15:89893881:- chr15:90373831-90437870:- chr15:90437113:- ARPIN-AP3S2 ENSG00000250021.7 protein_coding - + chr15:89834308-89912882:- chr15:89890080:+ chr15:90377540-90456114:- chr15:90433312:+ chr15:89891226,chr15:89891228 chr15:89887207,chr15:89887205 NA NA chr15:90434458,chr15:90434460 chr15:90430439,chr15:90430437 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Clathrin_adaptor_complex_small_chain(14%)| Clat_adaptor_s(0%)| 24 8 2 575 74 ENST00000336418.9 unknown upstream upstream duplicates(6),mismatches(3) CGGTGCTGAGAGAACCGTGGCTGGCAAAGATGATTCAGGCGATTCTGGTTTTCAACAACCATGGGAAGCCACGGCTAGTCCGCTTCTACCAGCGTTTC|ACAGAGTCTTGTTCTGTTGCCCAGGCAGTGGTGTGATCACAGCTCATTGCAACCTCCACCTCCGGGTTCA?GtGATTCTCCTGCCTCAGCCTCCCCAG MIQAILVFNNHGKPRLVRFYQRF|tescsvaqavv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21810 AP3S2::ARPIN-AP3S2 ENSG00000157823.17::ENSG00000250021.7 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3721 TRUE 1412 AP3S2 ENSG00000157823.17 protein_coding - + chr15:89830599-89894638:- chr15:89890192:+ chr15:90373831-90437870:- chr15:90433424:+ ARPIN-AP3S2 ENSG00000250021.7 protein_coding - - chr15:89834308-89912882:- chr15:89871546:- chr15:90377540-90456114:- chr15:90414778:- chr15:89891114,chr15:89891113 chr15:89887193,chr15:89887194 NA NA chr15:90434346,chr15:90434345 chr15:90430425,chr15:90430426 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Clathrin_adaptor_complex_small_chain(45%) |Clat_adaptor_s(60%) 2 8 7 95 435 unknown ENST00000398333.7 downstream downstream duplicates(7),mismatches(12) CTTTTGTACTGGTAATATAGATACTACATATAAGATGCTGTGTTACTCACCAACAAAGTATTATTGAGAAAAATAGATTACAGATTAAAATTTTGAACAGTT...TTTTTAGACAGAGTCTTGTTCTGTTGCCCAGGCAGTGGTGTGATCACAGCTCATTGCAACCTCCACCTCCGGGTTC??GtGATTCTCCTGCCTCAGCCTCCCCAGTGGCTG?GATTACAG|GTTTTTGTGGAAACTCTGGATAAGTGTTTCGAAAATGTGTGTGAATTGGATTTGATCTTCCATATGGATAAG___GTGCACTACATCCTCCAGGAGGTGGTGATGGGTGGGATGGTGTTGGAAACAAACATGAATGAAATCGTGGCTCAGATTGAGGCTCAAAACAGGCTGGAGAAATCCGAG___GGTGGCCTTTCAGCAGCCCCTGCGCGGGCTGTGTCTGCTGTGAAAAACATCAACCTG...CAACATTGGCGATCTCAACATCAAAGTTCCCAACCTGTCCCAGTTTGTCTGAGGATCAAGTATTGGCCTGAAATAGAGTCCTTAAGACAAGCAAAGACAAGCAAGGCAAGCACGTCTGGAAACAGAACCCATTTTGAGCCTTAGAAGAGTCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21813 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2025 TRUE 3722 TRUE 1413 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:862270:+ chr12:861745-1020618:+ chr12:971436:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ chr12:876012 chr12:1414013 NA NA chr12:985178 chr12:1523179 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)|FIP_domain_(100%) OSR1_C(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|RBD-FIP(100%) 6 5 19 122 157 ENST00000315939.11 ENST00000543086.7 downstream upstream duplicates(4),mismatches(1) TTTCTACACAAGTAGAACCTGAAGAACCTGAGGCAGATCAACATCAACAACTACAGTACCAGCAACCCAGTATATCTGTGTTAT___CTGATGGGACGGTTGACAGTGGTCAGGGATCCTCTGTCTTCACAGAATCTCGAGTGAGCAGCCAACAGACAGTTTCATATGGTTCCCAACATGAACAGGCACATTCTACAGGCACAGTCCCAGGGCATATACCTTCTACTGTCCAAGCACAGTCTCAGCCCCATGGGGTATATCCACCCTCAAGTGTG|ATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAG___CTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCC STQVEPEEPEADQHQQLQYQQPSISVLSDGTVDSGQGSSVFTESRVSSQQTVSYGSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSV|IIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGLTPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNAELQEFANAILQQIADHCPDILEQVVNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 21814 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2026 TRUE 3722 TRUE 1413 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:871348:+ chr12:861745-1020618:+ chr12:980514:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ chr12:876012 chr12:1414013 NA NA chr12:985178 chr12:1523179 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)|FIP_domain_(100%) OSR1_C(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|RBD-FIP(100%) 1 2 20 53 157 ENST00000315939.11 ENST00000543086.7 downstream upstream duplicates(3) CAGGGATCCTCTGTCTTCACAGAATCTCGAGTGAGCAGCCAACAGACAGTTTCATATGGTTCCCAACATGAACAGGCACATTCTACAGGCACAGTCCCAGG...ACCTTCTACTGTCCAAGCACAGTCTCAGCCCCATGGGGTATATCCACCCTCAAGTGTG___GCACAGGGGCAGAGCCAGGGTCAGCCATCCTCAAGTAGCTTAACAGGGGTTTCATCTTCCCAACCCATACAACATCCTCAGCAG|ATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAG___CTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGA PSTVQAQSQPHGVYPPSSVAQGQSQGQPSSSSLTGVSSSQPIQHPQQ|IIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGLTPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 21818 POFUT2::PTCH2 ENSG00000186866.17::ENSG00000117425.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2028 TRUE 3723 TRUE 1414 POFUT2 ENSG00000186866.17 protein_coding - - chr21:45263928-45287898:- chr21:45277017:- chr21:46683843-46707813:- chr21:46696932:- PTCH2 ENSG00000117425.14 protein_coding - - chr1:44819844-44843253:- chr1:44829761:- chr1:45285516-45308925:- chr1:45295433:- chr21:45274848,chr21:45274850 chr1:44829935,chr1:44829934 NA NA chr21:46694763,chr21:46694765 chr1:45295607,chr1:45295606 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none GDP-fucose_protein_O-fucosyltransferase(66%)|Patched_family(100%),Sterol-sensing_domain_of_SREBP_cleavage-activation(100%) O-FucT(43%)|Patched(100%),Sterol-sensing(100%) 4 12 7 244 126 ENST00000331343.11 ENST00000447098.6 upstream downstream duplicates(3),mismatches(1) GTGATGTTAGACAGAGCCGAGAACCTACTTCACGACCACTATGGAGGGAAAGAATACTGGGAT___ACCCGTCGCAGCATGGTGTTTGCCAGGCACCTGCGGGAGGTGGGAGACGAGTTCAGGAGCAGACATCTCAACTCCACGGACGACGCAGACAGGATCCCCTTCCAGGAGGACTGGATGAAGATGAAG|GGCAGAGGCCCTGCAGAGCACCTTCTTGCTGATGAGTCCCCGCCAGCTGTACGAGCATTTCCGGGGTGACTATCAGACACATGACATTGGCTGGAGTGAGGAGCAGGCCAGCACAGTGCTACAAGCCTGGCAGCGGCGCTTTGTGCAG___CTGGCCCAGGAGGCCCTGCCTGAGAACGCTTCCCAGCAGATCCATGCCTTCTCCTCCACCACCCTGGATGACATCCTGCATGCGTTC VMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMK|grgpaehlladesppavrafpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21819 POFUT2::PTCH2 ENSG00000186866.17::ENSG00000117425.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3723 TRUE 1414 POFUT2 ENSG00000186866.17 protein_coding - - chr21:45263928-45287898:- chr21:45277017:- chr21:46683843-46707813:- chr21:46696932:- PTCH2 ENSG00000117425.14 protein_coding - - chr1:44819844-44843253:- chr1:44829533:- chr1:45285516-45308925:- chr1:45295205:- chr21:45274848,chr21:45274850 chr1:44829935,chr1:44829934 NA NA chr21:46694763,chr21:46694765 chr1:45295607,chr1:45295606 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site translocation high none GDP-fucose_protein_O-fucosyltransferase(66%)|Patched_family(100%),Sterol-sensing_domain_of_SREBP_cleavage-activation(100%) O-FucT(43%)|Patched(96%),Sterol-sensing(100%) 1 0 2 244 137 ENST00000331343.11 ENST00000447098.6 upstream downstream duplicates(1) CAG___GGCTCAGCCTCCATCGTGGCGCCCCTGCTGCTGAGAAACACATCAGCCCG___GTCCGTGATGTTAGACAGAGCCGAGAACCTACTTCACGACCACTATGGAGGGAAAGAATACTGGGAT___ACCCGTCGCAGCATGGTGTTTGCCAGGCACCTGCGGGAGGTGGGAGACGAGTTCAGGAGCAGACATCTCAACTCCACGGACGACGCAGACAGGATCCCCTTCCAGGAGGACTGGATGAAGATGAAG|CTGGCCCAGGAGGCCCTGCCTGAGAACGCTTCCCAGCAGATCCATGCCTTCTCCTCCACCACCCTGGATGACATCCTGCATGCGTTCTCTGAAGTCAGTGCTGCCCGTGTGGTGGGAGGCTATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21822 FAT2::USP10 ENSG00000086570.13::ENSG00000103194.16 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2029 FALSE NA FALSE NA FAT2 ENSG00000086570.13 protein_coding - - chr5:151504092-151591331:- chr5:151517620:- chr5:150883653-150970892:- chr5:150897181:- USP10 ENSG00000103194.16 protein_coding + + chr16:84699986-84779922:+ chr16:84733435:+ chr16:84733592-84813528:+ chr16:84767041:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Cadherin_domain(100%),Laminin_G_domain(18%)|Ataxin-2_C-terminal_region(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) Cadherin(100%),Laminin_G_1(1%),Laminin_G_2(1%)|PAM2(100%),UCH(100%) 2 4 14 58 517 ENST00000261800.6 ENST00000219473.12 upstream upstream duplicates(1) ACAAGGTTCAGTGGTCAGAGCTATGTGCGGTACAGGGCCCCAGCGGCTCGGAACTGGCACATCCATTTCTATCTGAAAACACTCCAGCCACAGGCCATTCTTCTATTCACCAATGAAACAGCGTCCGTCTCCCTGAAG|TATATTTTTGGAGATTTTAGCCCTGATGAATTCAATCAATTCTTTGTGACTCCTCGATCTTCAGTTGAG___CTTCCTCCATACAGTGGAACAGTTCTGTGTGGCACACAGGCTGTGGATAAACTACCTGATG___GACAAGAATATCAGAGAATTGAGTTTGGTGTCGATGAAGTCATTGAACCCAGTGACACTTTGCCGAGAACCCCC TRFSGQSYVRYRAPAARNWHIHFYLKTLQPQAILLFTNETASVSLK|YIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQRIEFGVDEVIEPSDTLPRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6499 chr5:151522087-151522148:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21824 MRPL33::SLC4A1AP ENSG00000243147.8::ENSG00000163798.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2031 TRUE 3724 TRUE 1415 MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27782694:+ chr2:27994584-28210954:+ chr2:28005561:+ SLC4A1AP ENSG00000163798.14 protein_coding + + chr2:27663426-27695366:+ chr2:27682248:+ chr2:27886293-27918233:+ chr2:27905115:+ chr2:27813290,chr2:27813290,chr2:27813290 chr2:27680317,chr2:27680311,chr2:27680297 NA NA chr2:28036157,chr2:28036157,chr2:28036157 chr2:27903184,chr2:27903178,chr2:27903164 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ribosomal_protein_L33(100%)| PfkB(0%),Phos_pyr_kin(1%),Ribosomal_L33(100%)| 5 2 9 20 224 ENST00000448427.1 ENST00000696011.1 downstream upstream duplicates(1),mismatches(1) CGGAGACTGCCCAGGTGTGGTCACCATGTTCCTCTCCGCGGTCTTCT___TTGCCAAGAGCAAGTCAAA___GCTGTGGTTATGGTTTTTGGAAGACCACAGAGGTGAAATGTCATTTTCATCACATCATATTAAGGGCACATATGATCAACATGACTTCTTACTGATGGTGTTAACCCTGGTCACCTGGCTAAG|GACTGAAACTCAGACTACAGGTGCAGAAAACAAAGCTAAAAAGCTTACATTGCCTCTATTTGGTGCCATGAAAGGAGGAAGCAAATTCAAATTAAAAACTGGAACAGTAGGG___AAGTTACCCCCCAAGCGTCCAGAACTCCCTCCAACTCTAATGAGAATGAAAGATGAGCCTGAAGTAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAAGAGAAAGAAA MFLSAVFFAKSKSKLWLWFLEDHRGEMSFSSHHIKGTYDQHDFLLMVLTLVTWLr|TETQTTGAENKAKKLTLPLFGAMKGGSKFKLKTGTVGKLPPKRPELPPTLMRMKDEPEVEEEEEEEEEEEKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21825 MRPL33::SLC4A1AP ENSG00000243147.8::ENSG00000163798.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3724 TRUE 1415 MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27772692:+ chr2:27994584-28210954:+ chr2:27995559:+ SLC4A1AP ENSG00000163798.14 protein_coding + + chr2:27663426-27695366:+ chr2:27682248:+ chr2:27886293-27918233:+ chr2:27905115:+ chr2:27813290,chr2:27813290,chr2:27813290 chr2:27680317,chr2:27680311,chr2:27680297 NA NA chr2:28036157,chr2:28036157,chr2:28036157 chr2:27903184,chr2:27903178,chr2:27903164 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none none none 1 2 0 2630 224 ENST00000379666.7 ENST00000696011.1 downstream upstream none GGCCTTTTGGCCGGTGACGGAGACTGCCCAGGTGTGGTCACCATGTTCCTCTCCGCGGTCTTCT___TTGCCAAGAGCAAGTCAAA|GACTGAAACTCAGACTACAGGTGCAGAAAACAAAGCTAAAAAGCTTACATTGCCTCTATTTGGT...GCAAATTCAAATTAAAAACTGGAACAGTAGGG___AAGTTACCCCCCAAGCGTCCAGAACTCCCTCCAACTCTAATGAGAATGAAAGATGAGCCTGAAGTAGAA...ACATTTTAAAGAAACCCAAACCCATG___AAAACATGTCTCAACTTAGCGAGGAAGAACAGAATAAAGATTATCAAGACTGTAGCAAAACCACTTCATTGTGCG MFLSAVFFAKSKSk|TETQTTGAENKAKKLTLPLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21827 FLVCR1::CDC42BPA ENSG00000162769.13::ENSG00000143776.20 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FLVCR1 ENSG00000162769.13 protein_coding + + chr1:212858275-212899363:+ chr1:212888594:+ chr1:213031617-213072705:+ chr1:213061936:+ CDC42BPA ENSG00000143776.20 protein_coding - - chr1:226989865-227318492:- chr1:227081017:- chr1:227177566-227506193:- chr1:227268718:- chr1:212889140 chr1:227086033 NA NA chr1:213062482 chr1:227273734 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none Major_Facilitator_Superfamily(98%)|CNH_domain(100%),DMPK_coiled_coil_domain_like(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%) MFS_1(98%)|C1_1(100%),CNH(100%),DMPK_coil(100%) 4 4 5 35 57 ENST00000483790.1 ENST00000366766.8 downstream downstream duplicates(2),mismatches(1) GCTGGATTATACTAAAACATACAA___CTTCTTCATGACTGGTTACCTCCCTTTGGGTTTTGAATTTGCTGTTGAAATCACTTACCCTGAATCTGAAGGTACTTCATCTGGTCTTCTTAATGCTTCTGCACAG|CTTACTACTTTGTATGAGAACTTAAGTATACACAACCAGCAGTTAGAAGAAGAGGTTAAAGATCTAGCAGACAAGAAAGAATCAGTTGCACATTGGGAAGCCCAAATCACAGAAATAATTCAGTG___GGTCAGCGATGAAAAGGATGCACGAGGGTATCTTCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase MRCK alpha AGC DMPK GEK Q5VT25 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21832 SMYD2::TSNAX-DISC1 ENSG00000143499.14::ENSG00000270106.6 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD2 ENSG00000143499.14 protein_coding + + chr1:214281102-214337131:+ chr1:214281427:+ chr1:214454445-214510474:+ chr1:214454770:+ TSNAX-DISC1 ENSG00000270106.6 protein_coding + - chr1:231528653-231819244:+ chr1:231529368:- chr1:231664399-231954990:+ chr1:231665114:- chr1:214288049 chr1:231587515 NA NA chr1:214461392 chr1:231723261 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none MYND_finger(17%),SET_domain(27%)| SET(0%),zf-MYND(0%)| 0 6 6 207 463 ENST00000366957.10 unknown downstream downstream duplicates(2) CGCAGCTCGGGCACAGCCGGCGGCCGCGCCCCGCCGCCACCATGAGGGCCGAGGGCCTCGGCGGCCTGGAGCGCTTCTGCAGCCCGGGCAAAGGCCGGGGGCTGCGGGCTCTGCAGCCCTTCCAGGTGGGGGACTTGCTGTTCTCCTGCCCGGCCTATGCCTACGTGCTCACGGTCAACGAGCGGGGCAACCACTGCGAGTACTGCTTCACCAG|AGAACTTACATTTAAAGGCCAACATCACGGGTGAAGATGAATTAACATCCTTCCCTTCTCTTCTTTGGTTATGTGGGAAATTGTCATGCTTCCTTTTCCTGAACCCTCCTGATCCTTATATAGAGAAGAAAAAAAGAGAGGGATCTTCCATCACCAAGAGTTTGCAAAACACAACATAGACAAACCTACTCCTTGCTTTAAAACCAGATACCCACAGGGCCCTCGCCTTAGAGGCTTTCTCCGCAGACTGACAGAGACGCTGCCCAGGCCTTTCCAAGCAAATCATCCAAGTTTCCACCAACTGG MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTr|eltfkgqhhg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21834 TPCN1::DDX54 ENSG00000186815.13::ENSG00000123064.13 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TPCN1 ENSG00000186815.13 protein_coding + + chr12:113221050-113298585:+ chr12:113260492:+ chr12:113658855-113736390:+ chr12:113698297:+ DDX54 ENSG00000123064.13 protein_coding - + chr12:113157173-113185479:- chr12:113168623:+ chr12:113594978-113623284:- chr12:113606428:+ chr12:113264461,chr12:113264459 chr12:113158805,chr12:113158800 NA NA chr12:113702266,chr12:113702264 chr12:113596610,chr12:113596605 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 2 7 2 341 13 ENST00000550785.5 unknown downstream upstream duplicates(2),mismappers(4) CCCCACTGGCTCCCTCCAACGGCCTGGGCCAAGAAGAGCTACCTAGCAAAA___ATGGCGGCAGCTATGCCATCCACGACTCCCAGGCCCCCAGTCTCAGCTCTGGGGGTGAGAGTTCCCCCTCCAGCCCCGCACACAACTGGGAGATGAATTACCAAGAGGCAGCAATCTACCTCCAG|GATGTATACAGAAATGTCCTGTGGGCGGCTGGGCACAGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACCTGAGATCAGAAGTTCAAGACCAGCGTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATTAGCTGGGCGTGGTTGTGTGTGCCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGATGCGGAGGTTGTGG PLAPSNGLGQEELPSKNGGSYAIHDSQAPSLSSGGESSPSSPAHNWEMNYQEAAIYLQ|dvyrnvlwaaghsgsrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21839 ACOT7::PLEKHG5 ENSG00000097021.21::ENSG00000171680.23 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2033 FALSE NA FALSE NA ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6360570:- chr1:6324329-6453827:- chr1:6420630:- PLEKHG5 ENSG00000171680.23 protein_coding - - chr1:6467122-6520074:- chr1:6475138:- chr1:6527182-6580134:- chr1:6535198:- chr1:6360247 chr1:6475353 NA NA chr1:6420307 chr1:6535413 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |RhoGEF_domain(100%) |RhoGEF(100%) 2 3 4 10 99 ENST00000377845.7 ENST00000377740.5 upstream downstream duplicates(4) CAGCAATGCCCGCCTGGAGGGATGAGGCCAAGTCCAAAGGGCACAGTATTGGGGCCCAGGCTCATTCCTTGAGTTCCATTTGGCTGCAGCTTCTGGAGGGAGCCGACAGGAGACGTGGGGAGACGATGCTCCTGCTTCGGAGAAGCTTGTCACTAAACGTCCTCAGAAAGGAAGTCGACAGGGCCTGTTTTGGGGAGAAGGCCAAACA|GACCCAAGCAAGGAATGCTTCACTCTGAAATTTGACCTGAATGTGGACATTGAGACAGAGATCGTCCCAGCCATGAAGAAGAAGTCACTGGG___GGAGGTGCTGCTGCCTGTATTTGAAAGGAAGGGCATTGCGCTGGGCAAAGTGGACATCTACCTGGAC MLLLRRSLSLNVLRKEVDRACFGEKAKq|tqarnasl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach exact TRUE Esophageal carcinoma OESOPHAGUS exact 6341162|6354924 FALSE|FALSE 6556629|6556629 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21850 ZMAT3::KIAA0825 ENSG00000172667.11::ENSG00000185261.16 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3727 TRUE 1416 ZMAT3 ENSG00000172667.11 protein_coding - - chr3:178960121-179072215:- chr3:179004061:- chr3:178677909-178790003:- chr3:178721849:- KIAA0825 ENSG00000185261.16 protein_coding - - chr5:94150851-94618604:- chr5:94417380:- chr5:93486556-93954309:- chr5:93753085:- chr3:178994593,chr3:178994601 chr5:94433146,chr5:94433145 NA NA chr3:178712381,chr3:178712389 chr5:93768851,chr5:93768850 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Zinc-finger_double-stranded_RNA-binding(100%),Zinc-finger_of_C2H2_type(100%)| zf-C2H2_jaz(100%),zf-met(100%)| 2 1 2 4 3 ENST00000652290.1 ENST00000703867.1 upstream downstream none CCGAAATTACTATGCAGCAAATcGCTGTCaTCCTCCTGCTAGAATGAGCAATGTGGTCGAGCCTGCAGCTACTCCAGTTGTTCCAGTCCCcCCGCAGaTG...ATACAGTACAGAATAATTCAG___CAGGTCCTTACTTCAATCCCCGCTCTCGGCAGAGAATTCCACGTGATCTGGCCATGTGTGTTACTCCAAGTGGCCAGTTT...GTAATGTTGGAGCTGGCGAAGAGATGGAATTCCGGCAGCATTTAGAGAGCAAGCAACATAAGAGCAAG___GATACAGAAATGCTCTCTGCACTGCGCTGCCAC...ATTTTGTGTCAGCAACTCAAGACTGTTTTTTCTACCCTTCGGTGCCTCTTTCAGTGATATGAAGTTAAAACCAG|AACGTACCTTTCAAGAACAAGTTTCCGACACAGAAAATAACCTGAACCAAGGACCCAGCTTGATGGAAGCCATCTTTAAAATATTGTACCATTGCAGTTTTTCTCCACAAACATTTGCAAACGTTTTTGTGAGCTACATGGAAGAAG...AACATCCCAG___TCTCAACGTGCGTGGAGTACGAGCTAGAGGTCATCCGATGCTTGAGACTGGCACTGACCGATGCCATCAAGGACACTGTACAG...AACAAGCACAgTGTTCCTGATTGTTTGCTTGAGAGCATGCCAAAGGAATGGAATTATAGTCCAAAAGAAACTAACAGGAAAGAATCATGCAAAA___GCTTCAC FCVSNSRLFFLPFGASFSDMKLKP|eRTFQEQVSDTENNLNQGPSLMEAIFKILYHCSFSPQTFANVFVSYMEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21851 ZMAT3::KIAA0825 ENSG00000172667.11::ENSG00000185261.16 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3727 TRUE 1416 ZMAT3 ENSG00000172667.11 protein_coding - - chr3:178960121-179072215:- chr3:179025068:- chr3:178677909-178790003:- chr3:178742856:- KIAA0825 ENSG00000185261.16 protein_coding - - chr5:94150851-94618604:- chr5:94417380:- chr5:93486556-93954309:- chr5:93753085:- chr3:178994593,chr3:178994601 chr5:94433146,chr5:94433145 NA NA chr3:178712381,chr3:178712389 chr5:93768851,chr5:93768850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Zinc-finger_double-stranded_RNA-binding(100%),Zinc-finger_of_C2H2_type(100%)| zf-C2H2_jaz(100%),zf-met(100%)| 0 1 1 95 3 ENST00000652290.1 ENST00000703867.1 upstream downstream none AATTCCGGCAGCATTTAGAGAGCAAGCAACATAAGAGCAAG|AACGTACCTTTCAAGAACAAGTTTCCGACACAGAAAATAACCTGAACCAAGGACCCAGCTTGATGGAAGCCATCTTTAAAATATTGTACCATTGCAGTTTTTCTCCACAAACATTTGCAAACGTTTTTGTGAGCTACATGGAAGAAG...TCCGATGCTTGAGACTGGCACTGACCGATGCCATCAAGGACACTGTACAGCAGATAGTATCTGTAATGAGTTCTAGGAGAAACTGTGAGACAAACCTAAAC FRQHLESKQHKSK|nvpfknkfptqkit* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21857 SMYD3::KCNK2 ENSG00000185420.19::ENSG00000082482.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3729 TRUE 1417 SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246327201:- chr1:245912644-246670614:- chr1:246490503:- KCNK2 ENSG00000082482.14 protein_coding + + chr1:215005775-215237090:+ chr1:215086368:+ chr1:215179118-215410433:+ chr1:215259711:+ chr1:246129727 chr1:215025829 NA NA chr1:246293029 chr1:215199172 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none MYND_finger(100%),SET_domain(79%)|Ion_channel(100%) SET(30%),zf-MYND(100%)|Ion_trans(100%),Ion_trans_2(100%) 0 1 3 112 124 ENST00000490107.6 ENST00000486921.5 upstream upstream duplicates(1) CTCAGGCAACTCGTAATGACATTTCAACATTTCATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCCTTTGCAAAA|TGGCGGCACCTGACTTGCTGGATCCTAAATCTGCCGCTCAGAACTCCAAACCGAGGCTC...TGTCCTCTATCTGATCATCGGAGCCACCGTGTTCAAAGCATTGGAGCAGCCTCATGAGATTTCACAGAGGACCACCATTGTGATCCAGAAGCAAACATTCA LRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAK|wrhltcwilnlplrtpnrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21858 SMYD3::KCNK2 ENSG00000185420.19::ENSG00000082482.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3729 TRUE 1417 SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246330480:- chr1:245912644-246670614:- chr1:246493782:- KCNK2 ENSG00000082482.14 protein_coding + + chr1:215005775-215237090:+ chr1:215086368:+ chr1:215179118-215410433:+ chr1:215259711:+ chr1:246129727 chr1:215025829 NA NA chr1:246293029 chr1:215199172 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none MYND_finger(100%),SET_domain(64%)|Ion_channel(100%) SET(29%),zf-MYND(100%)|Ion_trans(100%),Ion_trans_2(100%) 0 2 2 73 124 ENST00000490107.6 ENST00000486921.5 upstream upstream none GGGAATGCAAATGCCTTAAAAGCTGCAAACCCAGATATCCTCCAGACTCCGTTCGACTTCTTGGCAGAGTTGTCTTCAAACTT___ATGGATGGAGCACCTTCAGAATCAGAGAAGCTTTACTCATTTTATGATCTGGAGTCAA|TGGCGGCACCTGACTTGCTGGATCCTAAATCTGCCGCTCAGAACTCCAAACCGAGGCTCTCGTTTTCCACGAAACCCACAGTGCTTGCTTCCCGGGTGGAGAGTGACACGAC ECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLES|mAAPDLLDPKSAAQNSKPRLSFSTKPTVLASRVESDT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21859 SMYD3::KCNK2 ENSG00000185420.19::ENSG00000082482.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3729 TRUE 1417 SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246327201:- chr1:245912644-246670614:- chr1:246490503:- KCNK2 ENSG00000082482.14 protein_coding + + chr1:215005775-215237090:+ chr1:215124633:+ chr1:215179118-215410433:+ chr1:215297976:+ chr1:246129727 chr1:215025829 NA NA chr1:246293029 chr1:215199172 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none MYND_finger(100%),SET_domain(79%)|Ion_channel(100%) SET(30%),zf-MYND(100%)|Ion_trans(53%),Ion_trans_2(100%) 1 0 3 112 103 ENST00000490107.6 ENST00000391895.6 upstream upstream none GCTAAGTGTCAG___AAAAAAGCTTGGCCAGACCACAAGCGGGAATGCAAATGCCTTAAAAGCTGCAAACCCAGATATCCTCCAGACTCCGTTCGACTTCTTGG...CTCAGGCAACTCGTAATGACATTTCAACATTTCATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCCTTTGCAAAA|CAAATAGTGGCAGCAATAAATGCAGGGATTATACCGTTAGGAAACACCTCCAATCAAATCAG LRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAK|QIVAAINAGIIPLGNTSNQI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21860 SMYD3::KIF26B ENSG00000185420.19::ENSG00000162849.16 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:245858498:- chr1:245912644-246670614:- chr1:246021800:- KIF26B ENSG00000162849.16 protein_coding + - chr1:245154985-245709432:+ chr1:245235425:- chr1:245318287-245872734:+ chr1:245398727:- chr1:245806149,chr1:245806149 chr1:245238664,chr1:245238665 NA NA chr1:245969451,chr1:245969451 chr1:245401966,chr1:245401967 NA NA sense antisense unknown CDS/splice-site intron deletion/5'-5' high none MYND_finger(100%),SET_domain(100%)| SET(100%),zf-MYND(100%)| 1 0 3 57 5 ENST00000488153.5 unknown upstream downstream none GGAG___GATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGA___AGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCAcGGAGCCATAC|AGGAAAGGATCTTGCTATGTTGCCGAGACTGGTCTGGAACTCCTGGCCTCGAGCCATCCTCCTGCCTCAGCCTCTCAAAGCACTGGAATTACAAGCATGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21873 ARPIN-AP3S2::AP3S2 ENSG00000250021.7::ENSG00000157823.17 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARPIN-AP3S2 ENSG00000250021.7 protein_coding - + chr15:89834308-89912882:- chr15:89890192:+ chr15:90377540-90456114:- chr15:90433424:+ AP3S2 ENSG00000157823.17 protein_coding - - chr15:89830599-89894638:- chr15:89871546:- chr15:90373831-90437870:- chr15:90414778:- chr15:89891114,chr15:89891113 chr15:89887193,chr15:89887194 NA NA chr15:90434346,chr15:90434345 chr15:90430425,chr15:90430426 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Clathrin_adaptor_complex_small_chain(34%) |Clat_adaptor_s(60%) 2 8 7 95 435 unknown ENST00000336418.9 downstream downstream duplicates(7),mismatches(12) CTTTTGTACTGGTAATATAGATACTACATATAAGATGCTGTGTTACTCACCAACAAAGTATTATTGAGAAAAATAGATTACAGATTAAAATTTTGAACAGTT...TTTTTAGACAGAGTCTTGTTCTGTTGCCCAGGCAGTGGTGTGATCACAGCTCATTGCAACCTCCACCTCCGGGTTC??GtGATTCTCCTGCCTCAGCCTCCCCAGTGGCTG?GATTACAG|GTTTTTGTGGAAACTCTGGATAAGTGTTTCGAAAATGTGTGTGAATTGGATTTGATCTTCCATATGGATAAG___GTGCACTACATCCTCCAGGAGGTGGTGATGGGTGGGATGGTGTTGGAAACAAACATGAATGAAATCGTGGCTCAGATTGAGGCTCAAAACAGGCTGGAGAAATCCGAG___GGTGGCCTTTCAGCAGCCCCTGCGCGGGCTGTGTCTGCTGTGAAAAACATCAACCTG...CAACATTGGCGATCTCAACATCAAAGTTCCCAACCTGTCCCAGTTTGTCTGAGGATCAAGTATTGGCCTGAAATAGAGTCCTTAAGACAAGCAAAGACAAGCAAGGCAAGCACGTCTGGAAACAGAACCCATTTTGAGCCTTAGAAGAGTCAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-5094 chr15:89850637-89850721:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21896 CFAP206::ENSG00000243176 ENSG00000272514.6::ENSG00000243176.8 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3731 TRUE 1418 CFAP206 ENSG00000272514.6 protein_coding + + chr6:87407972-87464465:+ chr6:87426645:+ chr6:88117690-88174183:+ chr6:88136363:+ ENSG00000243176 ENSG00000243176.8 lncRNA + + chr3:157174201-157381265:+ chr3:157315811:+ chr3:156891990-157099054:+ chr3:157033600:+ chr6:87427227 chr3:157181638 NA NA chr6:88136945 chr3:156899427 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Domain_of_unknown_function(38%)| FAP206(50%)| 1 1 0 70 7 ENST00000369562.9 ENST00000668714.2 downstream upstream duplicates(1) CCCATCTGGAACAACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACATCACAAGTCTTT|AAAACTGACAACTGTTTAGAACAAAGCCAAAGATGAAACCAAATATAAAAC...ATTATTATAATGTATTCAGCATTAAAATTCATTATTTCCCAATAAGCTTGACTTTATCTTATAATGAAATACAACTGTCTTCTTGGTGATTTTTATAGGAG HLEQLKMTIKSKIAVPTSQVF|ktdncleqsqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21897 CFAP206::ENSG00000243176 ENSG00000272514.6::ENSG00000243176.8 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3731 TRUE 1418 CFAP206 ENSG00000272514.6 protein_coding + + chr6:87407972-87464465:+ chr6:87426645:+ chr6:88117690-88174183:+ chr6:88136363:+ ENSG00000243176 ENSG00000243176.8 lncRNA + + chr3:157174201-157381265:+ chr3:157230089:+ chr3:156891990-157099054:+ chr3:156947878:+ chr6:87427227 chr3:157181638 NA NA chr6:88136945 chr3:156899427 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Domain_of_unknown_function(38%)| FAP206(50%)| 0 1 0 70 2 ENST00000369562.9 ENST00000701678.1 downstream upstream none CAAAACAGTTAGGAGCCCATCTGGAACAACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACATCACAAGTCTTT|AAAAAAAGTATACTCATGAGC...ATTACAGACTACTAAAAACATGGGATTGCCAGTTGTTCAGAAATTCCACAGATGGATCGTGAGTG___GTTGTTGGATCTTTCCAGATCACCACACCACATCAC KQLGAHLEQLKMTIKSKIAVPTSQVF|kksilm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21900 ENSG00000213204::ENSG00000243176 ENSG00000213204.8::ENSG00000243176.8 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3732 TRUE 1419 ENSG00000213204 ENSG00000213204.8 protein_coding + + chr6:87408012-87511634:+ chr6:87426645:+ chr6:88117730-88221352:+ chr6:88136363:+ ENSG00000243176 ENSG00000243176.8 lncRNA + + chr3:157174201-157381265:+ chr3:157315811:+ chr3:156891990-157099054:+ chr3:157033600:+ chr6:87427227 chr3:157181638 NA NA chr6:88136945 chr3:156899427 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none FAP206(50%)| 1 1 0 70 7 ENST00000507897.5 ENST00000668714.2 downstream upstream duplicates(1) CCCATCTGGAACAACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACATCACAAGTCTTT|AAAACTGACAACTGTTTAGAACAAAGCCAAAGATGAAACCAAATATAAAAC...ATTATTATAATGTATTCAGCATTAAAATTCATTATTTCCCAATAAGCTTGACTTTATCTTATAATGAAATACAACTGTCTTCTTGGTGATTTTTATAGGAG HLEQLKMTIKSKIAVPTSQVF|ktdncleqsqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21901 ENSG00000213204::ENSG00000243176 ENSG00000213204.8::ENSG00000243176.8 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3732 TRUE 1419 ENSG00000213204 ENSG00000213204.8 protein_coding + + chr6:87408012-87511634:+ chr6:87426645:+ chr6:88117730-88221352:+ chr6:88136363:+ ENSG00000243176 ENSG00000243176.8 lncRNA + + chr3:157174201-157381265:+ chr3:157230089:+ chr3:156891990-157099054:+ chr3:156947878:+ chr6:87427227 chr3:157181638 NA NA chr6:88136945 chr3:156899427 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none FAP206(50%)| 0 1 0 70 2 ENST00000507897.5 ENST00000701678.1 downstream upstream none CAAAACAGTTAGGAGCCCATCTGGAACAACTAAAAATGACCATAAAATCAAAGATAGCGGTCCCAACATCACAAGTCTTT|AAAAAAAGTATACTCATGAGC...ATTACAGACTACTAAAAACATGGGATTGCCAGTTGTTCAGAAATTCCACAGATGGATCGTGAGTG___GTTGTTGGATCTTTCCAGATCACCACACCACATCAC KQLGAHLEQLKMTIKSKIAVPTSQVF|kksilm NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21902 OSGIN2::NBN ENSG00000164823.11::ENSG00000104320.15 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OSGIN2 ENSG00000164823.11 protein_coding + + chr8:89901849-89927888:+ chr8:89914202:+ chr8:90914077-90940116:+ chr8:90926430:+ NBN ENSG00000104320.15 protein_coding - + chr8:89924515-90003228:- chr8:89952829:+ chr8:90936743-91015456:- chr8:90965057:+ chr8:89914756,chr8:89914772,chr8:89914752,chr8:89914773 chr8:89932007,chr8:89932004,chr8:89932004,chr8:89932004 NA NA chr8:90926984,chr8:90927000,chr8:90926980,chr8:90927001 chr8:90944235,chr8:90944232,chr8:90944232,chr8:90944232 NA NA sense antisense unknown CDS intron deletion/read-through/5'-5' low none none none 0 0 38 323 108 ENST00000297438.6 unknown downstream upstream duplicates(13),mismatches(1),read_through(42) GGCGAAAAGTTAAAGCGATGCCATTAGTTGAAGAAACTTCTTTACTGGAAGATTCGTCAGTGACTTTTCCTGTGGTAATAATAG___GAAATGGACCCTCAGGAATATGCCTTTCTTATATGTTATCAGGCTACAGACCGTATTTATCATCAGAAGCAATACACCCAAATACAATCTTAAATAGTAAATTAGAAGAAGCAAGACATCTTTCCA...|...CAAGGACATTACAAAACCTAAATGAAAATGAAAATTCCTAGTGATGTTATATCCTAAAAATTTATTGAGTAGATACTTTGTTTTACTAACTTCATCTTTCTGTGCCTGTTTCTTATACTGAAGCATCTCCTACACTTATCATCATAGCCAAATGTCTTTTATAATAGTACAGCCTAATTTGGAAATCTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21927 RALGPS1::GARNL3 ENSG00000136828.19::ENSG00000136895.19 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:126977745:+ chr9:129677053-129985445:+ chr9:129740024:+ GARNL3 ENSG00000136895.19 protein_coding + + chr9:127224265-127393660:+ chr9:127387193:+ chr9:129986544-130155939:+ chr9:130149472:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion low none RasGEF_domain(11%)|CNH_domain(0%) RasGEF(5%)| 1 1 0 54 13 ENST00000480993.1 ENST00000435213.6 downstream upstream none AGCAGGGCCCCAGGTGAGGAGCAGGCGAGG___GACTTCTCCAGACAGGTTATGTTACCTGCAGAGGCTGCCCTGAAGCTCCCTGTGGCCTGGAGACTATGTAC...AATGGATATACCTGTGTTTAAAGCTATCCAGCCGGAG|TCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCTCCAAGGGGGCCAGTGCCCG...GGAGATCAAAGAAATAGCAAGCAGGACCCGCAGGGAACTACTGG___GCCTCTCGGATGAAGGTGGACCCAAGTCAGAAGGAGCGCCAAAGGCCAAATCAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21938 ATP7A::SNRNP27 ENSG00000165240.22::ENSG00000124380.11 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ATP7A ENSG00000165240.22 protein_coding + + chrX:77910690-78050395:+ chrX:77971761:+ chrX:77166187-77305892:+ chrX:77227258:+ SNRNP27 ENSG00000124380.11 protein_coding + + chr2:69893956-69905575:+ chr2:69904512:+ chr2:70121088-70132707:+ chr2:70131644:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation low none Heavy-metal-associated_domain(8%)| HMA(0%),His_Phos_1(100%),LysM(100%)| 0 1 0 61 175 ENST00000341514.11 ENST00000487029.1 downstream upstream duplicates(1) GCAGATTGGAAAAGTGAATGGTGTGCATCACATTAAG|GAAATATCATTTGTGGCAGGCGgCAACCCCATTTTATTTGTCCTTATTCCTGTGGAAGCAGTAT...TTTTCTTCCTGAATGCTCATTAGGACTTCTTAAAAAACATGAAAGTAATTTGGAA___GGTCCGTACTTAGACGTGGCATTGCTGAGTGAGATTAAAAGcGCCA QIGKVNGVHHIK|eisfvaggnpilfvlipveav NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21942 LAMA3::S1PR2 ENSG00000053747.17::ENSG00000267534.4 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3733 FALSE NA LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23921585:+ chr18:21269417-21536186:+ chr18:21501549:+ S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10224947:- chr19:10332109-10342007:- chr19:10335623:- chr18:23923040 chr19:10227501 NA NA chr18:21503004 chr19:10338177 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Laminin_B_(Domain_IV)(100%),Laminin_Domain_I(100%),Laminin_Domain_II(100%),Laminin_EGF_domain(100%),Laminin_G_domain(39%),Laminin_N-terminal_(Domain_VI)(100%)|7_transmembrane_receptor_(rhodopsin_family)(100%) Laminin_B(100%),Laminin_EGF(100%),Laminin_G_1(27%),Laminin_G_2(18%),Laminin_I(100%),Laminin_II(100%),Laminin_N(100%)|7TM_GPCR_Srsx(100%),7tm_1(100%) 14 7 27 2317 140 ENST00000313654.14 ENST00000646641.1 downstream downstream duplicates(13),mismatches(1) ATTCAGACCACCGTGGATAGAGGCTTGCTGTTCTTTGCAGAAAACGGG___GATCGCTTCATATCTCTAAATATAGAAGATGGCAAGCTCATGGTGAGATACAAACTGAATTCAGAGCTACCAAAAGAGAGAGGAGTTGGAGACGCCATAAACAACGGCAGAGACCATTCG___ATTCAGATCAAAATTGGAAAACTCCAAAAGCGTATGTGGATAAATGTGGACGTTCAAAACACTATAATTGATGGTGAAGTATTTGATTTCAGCACATATTATCTGGGAGGAATTCCAATTGCAATCAGGGAAAG|TTCTGAAAGCCCCATGGCCCCAGCAGGCCTCTGAGCCCCACCATGGGCAGCTTGTACTCGGAGTACCTGAACCCCAACAAGGTCCAGGAACACTATAATTATACCAAGGAGACGCTGGAAACGCAGGAGACGACCTCCCGCCAGGTGGCCTCGGCCTTCATCGTCATCCTCTGTTGCGCCATTGTGGTGGAAAACCTTCTGGTGCTCATTGCGGTGGCCCGAAACAGCAAGTTCCACT IQTTVDRGLLFFAENGDRFISLNIEDGKLMVRYKLNSELPKERGVGDAINNGRDHSIQIKIGKLQKRMWINVDVQNTIIDGEVFDFSTYYLGGIPIAIREs|sespmapagl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21944 AMOTL1::FERMT3 ENSG00000166025.18::ENSG00000149781.14 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AMOTL1 ENSG00000166025.18 protein_coding + + chr11:94706431-94876748:+ chr11:94795160:+ chr11:94439597-94609913:+ chr11:94528326:+ FERMT3 ENSG00000149781.14 protein_coding + - chr11:64205926-64223896:+ chr11:64211805:- chr11:63973398-63991368:+ chr11:63979277:- chr11:94797827,chr11:94797823,chr11:94797822 chr11:64213714,chr11:64213718,chr11:64213718 NA NA chr11:94530993,chr11:94530989,chr11:94530988 chr11:63981186,chr11:63981190,chr11:63981190 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 5 5 8 818 22 ENST00000433060.3 unknown downstream downstream duplicates(4),mismatches(2) ATCGCCTCATGTGGAGGGCAAAGTTGCGCCGGGGAACTTGTGAGCCTGCGGTGAAAG___GGTCCCCTTCTGCTTGTTATAGCCCCAGTAGTCCTGTCCAGGTTCTAGAAGACTCCACCTACTTTTCCCCAGACTTTCAGCTCTATTCTGGGAGGCATGAAACATCTGCTTTGACGGTGGAGGCAACCAGTAGCATCAGGGAAAAAGTTG|GCCCTAGGTCTCCACATCTCATGGACCTGAGGCCCGCTTTCTCCCTGCCCCGACCCACCTTGGGATCCAAATCGAAGAAGCTGTAGTACTTGAAGCGCAGCCAGAGTGCGTCCCCGGCCTTGATGCCCTGCTGCATGAGACACCGCGACGAGTCCAGCCACCTGGGCCGCGGCAGAAGCAGCAGTCAGGGCTGCGCCAG___GAGCCCGGAGCAGGGACAGCTCCTCGGGGTGCCGGA MWRAKLRRGTCEPAVKGSPSACYSPSSPVQVLEDSTYFSPDFQLYSGRHETSALTVEATSSIREKV|gprsphlmdlrpafslprptlgskskkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21951 C11orf80::MAPKAPK5 ENSG00000173715.19::ENSG00000089022.15 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2040 FALSE NA FALSE NA C11orf80 ENSG00000173715.19 protein_coding + + chr11:66744451-66843516:+ chr11:66759096:+ chr11:66511922-66610987:+ chr11:66526567:+ MAPKAPK5 ENSG00000089022.15 protein_coding + + chr12:111842013-111902222:+ chr12:111880447:+ chr12:112279817-112340026:+ chr12:112318251:+ chr11:66778855 chr12:111879419 NA NA chr11:66546326 chr12:112317223 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(39%) |PK_Tyr_Ser-Thr(26%),Pkinase(26%) 2 3 4 268 254 ENST00000540737.7 ENST00000550735.7 downstream upstream none GCGGCGGCGGCGGCGGCGGCGGCGGGCGGGTACCCTTCGACTGGGCGTTGCCGCTGTTCCCTGCGCGGCATGGAGGGGACGGCCGTGGCCGTGTTCGAG___TTGCTTCTGCAGGAAGCCTTTTTGGTGGCATGGTCCTCAAGAAGTTCCTAAAAG|GTACTGGAGGCGCAAAGAAGGCATCAGAAGGAGAAATCTGGCATCATACCTACCTCACCGACGCCCTACACTTACAACAAG___AGCTGTGACTTGTGGTCCCTAGGGGTGATTATCTATGTGATGCTGTGCGGATACCCTCCTTTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAAGAAAG...GAGTGGAGTCAGATCTCAGAGATGcCCAAAGATGTTGTGAGGAA___cCTCCTGAAGGTCAAACCGGAGGAGAGACTCACCATCGAGaGAGTGCTGGACCACC MVLKKFLK|gtggakkasegeiwhhtyltdalhlqqel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-activated protein kinase 5 CAMK MAPKAPK MK5 Q8IW41 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21952 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 4 1 4 406 4 ENST00000506640.3 unknown upstream downstream duplicates(2),mismatches(2),multimappers(2) GTCACGGCAGCCTCCGCAGATGAGCCTACTGCCTCACAACAGCCTCCACAGGCACAGCTCCATCGTTACAATGGCCTCTTTAGACCCAGCTCCTGCCTCCCAGCCTTCTCTCCAGGCTCTGAACTTTCTCAGTAAGTTCAGGTAGCTGGGACTGTAG___GGTCTCCCTCTGTTGTCCAAGGCTGGAGTGTAGTAGTGCTATCGCAGCTGACTGCAGCCTCAACCTTCCAGGCTGAAGCGATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21954 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 1 2 3 406 53 ENST00000506640.3 unknown upstream downstream mismatches(1),multimappers(1) ATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTC?CCcCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGATTCCTTCAACCGTCACTGAGC...CCCGAGCCTCATAGTTCAGGAGGGGCAGGAGGGGCTGATCGCCCTCACCCCAGAACAGCGCTTTGGCGATCCTTCACGCAGACACCAGTCCCCTCTCTCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21955 CSMD3::PAQR8 ENSG00000164796.18::ENSG00000170915.9 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:112674198:- chr8:113235157-114449168:- chr8:113686427:- PAQR8 ENSG00000170915.9 protein_coding + + chr6:52361421-52407777:+ chr6:52403162:+ chr6:52226219-52272575:+ chr6:52267960:+ chr8:112667291,chr8:112667293 chr6:52380727,chr6:52380725 NA NA chr8:113679520,chr8:113679522 chr6:52245525,chr6:52245523 NA NA sense sense unknown intron 5'UTR/splice-site translocation high none CUB_domain(28%),Sushi_repeat_(SCR_repeat)(14%)|Haemolysin-III_related(100%) CUB(63%),Sushi(56%)|HlyIII(100%) 2 0 3 16 3 unknown ENST00000442253.3 upstream upstream duplicates(2) CAGACAGGCAACTACAAAAGGTTGAGCTTCTCTTTTATCAGGGAATTGTGCGGTGAGAAGCCATTCTCCTCACTCTTGGCCTTTGCAAACAACTCATTTGTTC...GGAGAATCAACATGTTCCATACCTGACAAAAGAGAGGCACCAGTGACCAGACAAAGGTTTGCAAGGAAAGCAATAACTTCCAGGAAAGGACTATGACCTTTCACCTCATCCCAGCCCTAACTCACCACAGGAAACAGGATCTAAAGGTAAAAGGAAGAGGACAAGATATAAAATAAGTGATAATACCTTCTCTACTCCAAGTGCTGAA|GTTGCATACCCTGTCCTGAGGGCGCGGCACGGAGTGCATGCGGGCCGCgGCCATGACGACCGCCATCTTGGAGCGCCTGAGCACCCTGTCG...CAAGATGCCTTGCACTGTCCCAGAAACGGATGTGCCCCAGCTCTTCCGGGAGCCTTACATCCGCACCGGCTACCGCCCCACGGGGCACGAGTGGCGCTACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 21956 ANKRD36B::ZNF479 ENSG00000196912.13::ENSG00000185177.14 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2041 FALSE NA FALSE NA ANKRD36B ENSG00000196912.13 protein_coding - - chr2:97492663-97589877:- chr2:97553168:- chr2:98109127-98206340:- chr2:98169631:- ZNF479 ENSG00000185177.14 protein_coding - - chr7:57117676-57139864:- chr7:57121152:- chr7:57185383-57207571:- chr7:57188859:- chr2:97552072,chr2:97552074 chr7:57121904,chr7:57121903 NA NA chr2:98168535,chr2:98168537 chr7:57189611,chr7:57189610 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Ankyrin_repeats_(3_copies)(100%)|Zinc_finger__C2H2_type(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%)|zf-C2H2(100%),zf-C2H2_6(100%) 0 2 3 36 5 ENST00000359901.9 ENST00000331162.8 upstream downstream none GGATGGACTACAATGTGGGACAG___TGTCTTCTCAGAAACAACAAGCCTTGAAG___GCTACAACTGACGAGGAAGGTTCTGTTTCTAATATAGCCACAGAAATAAAGGATGGAGAAAAATCTGGGACAG|TTACGCGTTCCCATTTCACCCAAGACCTTCAGCCAGAGCAGGGCATCAAAGATTCACTCCAAAAAGTAATACCAAGAACATATGGAAAATGTGGACATGAGAAATTACAATTTAAAAAATGCTGTAAAAGTGTGGGTGAATATGAGGTGCACAAGGGAGGTTATAGTGAAGTTAACCAATGTTTGTCAACTACCCAAAACAAAATATTTCAGACTCATAAATATGTCAAAGTCTTTGGTAAATTTTCAAATTCC DGLQCGTVSSQKQQALKATTDEEGSVSNIATEIKDGEKSGT|vTRSHFTQDLQPEQGIKDSLQKVIPRTYGKCGHEKLQFKKCCKSVGEYEVHKGGYSEVNQCLSTTQNKIFQTHKYVKVFGKFSN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE zinc finger protein 479 2 lung cancer, bladder carcinoma, prostate carcinoma epithelial missense 21957 RAB33B-AS1::SETD7 ENSG00000273247.7::ENSG00000145391.14 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3736 FALSE NA RAB33B-AS1 ENSG00000273247.7 lncRNA - - chr4:139411927-139454034:- chr4:139453685:- chr4:140333081-140375188:- chr4:140374839:- SETD7 ENSG00000145391.14 protein_coding - - chr4:139495941-139606699:- chr4:139547049:- chr4:140417095-140527853:- chr4:140468203:- chr4:139453372,chr4:139453377,chr4:139453376 chr4:139602679,chr4:139602681,chr4:139602679 NA NA chr4:140374526,chr4:140374531,chr4:140374530 chr4:140523833,chr4:140523835,chr4:140523833 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |MORN_repeat(100%),SET_domain(100%) |MORN(100%),MORN_2(100%),SET(100%) 0 2 1 15 267 ENST00000608661.1 ENST00000608795.5 upstream downstream mismatches(1) GCTGGGCCCAGCGCCCTGACTGACCCAGCCCCGCCACGgCCAAGGTTCCCGCCCTCTGGAGGAAGCCGCGCAATCACTCCGGGGGCGGGGAGAGACAGACAACTGAGAGGAAGGAGGTACCACGGGCACTCTCTCGCGAGAGGGCCGCAGAGCCGCCTTTGACGGGGGCGTGTACCTGGAGAGCAACG|GGCACCTGGACGATGACGGATTACCGCACGGGTTCTGCACAGTCACCTACTCCTCCACAGACAGATTTGAGGGGAACTTTGTTCACGGAGAAAAGAACGGACGGGGGAAGTTCTTCTTCTTTGATGGCAG___CACCCTGGAGGGGTATTATGTGGATGATGCCTTGCAGGGCCAGGGAGTTTACACTTACGAAGATGGGGGAGTTCTCCAGGGCACGTATGTAGACGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21971 GUSBP1::CDH12 ENSG00000291102.1::ENSG00000154162.15 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GUSBP1 ENSG00000291102.1 lncRNA + + chr5:21341833-21589372:+ chr5:21502165:+ chr5:21341942-21589481:+ chr5:21502274:+ CDH12 ENSG00000154162.15 protein_coding - + chr5:21750673-22853344:- chr5:21965658:+ chr5:21750782-22853453:- chr5:21965767:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/5'-5' low none none none 0 0 3 29 2 ENST00000688956.1 unknown downstream upstream duplicates(1) GCAGAAAATACGTGGTTGGAGAGCTCATCTGGAATTTTGCCGATTTCATGACTAACCAGT___CCAAGGATGAAGGAAAAACTGGACCTCATTATGGATTTACTTTTGGGATACACTC...|...GTGATACCTTCACTCTAATTTTACTTTCTGAGGAAGTTTTCTGTAATAGTTAtTTGGTGATAATTATTAATACTG___GTGAGAAAATCAATGTAAAAGAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21989 ENSG00000250603::SLC12A2-DT ENSG00000250603.1::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3738 TRUE 1420 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127956921:- chr5:127274844-127418864:- chr5:127292613:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 79 55 254 30566 3194 ENST00000507509.1 ENST00000499346.7 upstream downstream duplicates(100),mismappers(1),mismatches(6),multimappers(1) AAAGAGCATTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|ATGGAATCTTGCTCTCTTGCTCAGACTGGAGTGCAGTGGCATGACCTTGGCTCACTGCAACCTCACCTCTCGGGTTCAAGCGATTCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAG___GTGGGAGACCTCCACAGAACCCTTCCAGCAAGCTGTCTTCTAAAGCAAACAAGAAAAGGAAAGTCTGAGCAGTTTTGATTAGATTTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21990 ENSG00000250603::SLC12A2-DT ENSG00000250603.1::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3738 TRUE 1420 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127941220:- chr5:127274844-127418864:- chr5:127276912:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 46 51 169 30566 6226 ENST00000507509.1 ENST00000499346.7 upstream downstream duplicates(75),mismappers(1),mismatches(7) AGAGCATTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|GTGGGAGACCTCCACAGAACCCTTCCAGCAAGCTGTCTTCTAAAGCAAACAAGAAAAGGAAAGTCTGAGCAGTTTTGATTAGATTTCCCAGAAGTCAAAGCAAGGAAAAATGAAAAAGCTTCATTTCTCACGTTCTTAAAAGAGAGCACAGATGTTGCATCATCTGGTTAGATACCCTGAGAATAAAATCTGGATCCAGTGAGAGGAAAGATTCTGGGTGCTCATGAAAAAAGAAACAAAACAAAACTTGGGAGCCTCTTGAGAGTGTACAGCATCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21992 ENSG00000250603::SLC12A2-DT ENSG00000250603.1::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3738 TRUE 1420 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857616:- chr5:127174178-127193496:- chr5:127193308:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127956921:- chr5:127274844-127418864:- chr5:127292613:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 254 30566 3194 ENST00000507509.1 ENST00000499346.7 upstream downstream duplicates(62),mismappers(1),mismatches(5),multimappers(1) AGAGCATTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTC|ATGGAATCTTGCTCTCTTGCTCAGACTGGAGTGCAGTGGCATGACCTTGGCTCACTGCAACCTCACCTCTCGGGTTCAAGCGATTCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAG___GTGGGAGACCTCCACAGAACCCTTCCAGCAAGCTGTCTTCTAAAGCAAACAAGAAAAGGAAAGTCTGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21993 CCDC192::SLC12A2-DT ENSG00000230561.7::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3739 TRUE 1421 CCDC192 ENSG00000230561.7 protein_coding + - chr5:127703361-127941507:+ chr5:127878087:- chr5:127039053-127277199:+ chr5:127213779:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- chr5:127829624,chr5:127829631,chr5:127836052,chr5:127809457,chr5:127809452,chr5:127829622,chr5:127829622 chr5:127981768,chr5:127981768,chr5:127989638,chr5:127995380,chr5:127995378,chr5:127981769,chr5:127981766 NA NA chr5:127165316,chr5:127165323,chr5:127171744,chr5:127145149,chr5:127145144,chr5:127165314,chr5:127165314 chr5:127317460,chr5:127317460,chr5:127325330,chr5:127331072,chr5:127331070,chr5:127317461,chr5:127317458 NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 298 111 300 1346 14703 unknown ENST00000657475.3 upstream downstream duplicates(210),low_entropy(6),mismatches(58) CAAAGATTGGTTCATATCCACAGATGGGTACCCAACCTAAGCTAGGACTGAGTTCTTTCTTGCACTTTCCAACTAGAGTTAGTGGAAAAATGCTTTCTTTCTTCCCTGGAGATTATATGATAAGGAGGGCAGCCCATAGCTGCTTGTGGCCATATTTCCATTaTCTTCTGAAGTCTAGCCTGAGAGAATCAAGTCTCAATGCAGAGAGAAGCAGAG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGGCAAGCCGACTGACGGCAAAACGACGTAGCAGAGAAAGAGAGAAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21994 CCDC192::SLC12A2-DT ENSG00000230561.7::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3739 TRUE 1421 CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127798162:+ chr5:127039053-127277199:+ chr5:127133854:+ SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- chr5:127829644,chr5:127829645,chr5:127829648,chr5:127829652,chr5:127829653,chr5:127829656,chr5:127829657,chr5:127829658,chr5:127829659,chr5:127829640,chr5:127829655,chr5:127829661,chr5:127829663,chr5:127829664,chr5:127829665,chr5:127829649,chr5:127829662,chr5:127829667,chr5:127829668,chr5:127829669,chr5:127829670,chr5:127829671,chr5:127829672,chr5:127829673,chr5:127829674,chr5:127829675,chr5:127829679,chr5:127829682,chr5:127829683,chr5:127829685,chr5:127829688,chr5:127829692,chr5:127829680,chr5:127829698,chr5:127836084,chr5:127836080,chr5:127915322,chr5:127915319,chr5:127809467,chr5:127809473,chr5:127809474,chr5:127809480,chr5:127809491,chr5:127809502,chr5:127809477,chr5:127809506,chr5:127809488,chr5:127809509,chr5:127809512,chr5:127809526,chr5:127809530,chr5:127809531,chr5:127809525,chr5:127809536,chr5:127809537 chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127989638,chr5:127989638,chr5:127992087,chr5:127992087,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380 NA NA chr5:127165336,chr5:127165337,chr5:127165340,chr5:127165344,chr5:127165345,chr5:127165348,chr5:127165349,chr5:127165350,chr5:127165351,chr5:127165332,chr5:127165347,chr5:127165353,chr5:127165355,chr5:127165356,chr5:127165357,chr5:127165341,chr5:127165354,chr5:127165359,chr5:127165360,chr5:127165361,chr5:127165362,chr5:127165363,chr5:127165364,chr5:127165365,chr5:127165366,chr5:127165367,chr5:127165371,chr5:127165374,chr5:127165375,chr5:127165377,chr5:127165380,chr5:127165384,chr5:127165372,chr5:127165390,chr5:127171776,chr5:127171772,chr5:127251014,chr5:127251011,chr5:127145159,chr5:127145165,chr5:127145166,chr5:127145172,chr5:127145183,chr5:127145194,chr5:127145169,chr5:127145198,chr5:127145180,chr5:127145201,chr5:127145204,chr5:127145218,chr5:127145222,chr5:127145223,chr5:127145217,chr5:127145228,chr5:127145229 chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127325330,chr5:127325330,chr5:127327779,chr5:127327779,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 5 2 3 75 14703 ENST00000706942.1 ENST00000657475.3 downstream downstream duplicates(7),mismatches(1),multimappers(1) GCTGGAGGAAAAACTGGAGGCTGTGGACCACAAGGAAGCCAGTGGGGGACCATATGAAAAAATGGTTCTTGTGAAAGACCAG___TGCATCCAGAAATTGCAAGCTGAAGTAAAAGCTTCCCAGGAGCAACTTATAGCCCAG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGA LEEKLEAVDHKEASGGPYEKMVLVKDQCIQKLQAEVKASQEQLIAQ|ewiffcvlltrtgdgnte* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21995 CCDC192::SLC12A2-DT ENSG00000230561.7::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3739 TRUE 1421 CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127798162:+ chr5:127039053-127277199:+ chr5:127133854:+ SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127941220:- chr5:127274844-127418864:- chr5:127276912:- chr5:127900400,chr5:127900403,chr5:127900404,chr5:127900405,chr5:127900406,chr5:127900407,chr5:127900408,chr5:127900413,chr5:127900411,chr5:127900414,chr5:127900409,chr5:127900425,chr5:127900428,chr5:127900429,chr5:127900435,chr5:127900431,chr5:127900412,chr5:127900452,chr5:127900432,chr5:127900459,chr5:127900430,chr5:127829644,chr5:127829645,chr5:127829648,chr5:127829652,chr5:127829653,chr5:127829656,chr5:127829657,chr5:127829658,chr5:127829659,chr5:127829640,chr5:127829655,chr5:127829661,chr5:127829663,chr5:127829664,chr5:127829665,chr5:127829649,chr5:127829662,chr5:127829667,chr5:127829668,chr5:127829669,chr5:127829670,chr5:127829671,chr5:127829672,chr5:127829673,chr5:127829674,chr5:127829675,chr5:127829679,chr5:127829682,chr5:127829683,chr5:127829685,chr5:127829688,chr5:127829692,chr5:127829680,chr5:127829698,chr5:127836084,chr5:127836080,chr5:127915322,chr5:127915319,chr5:127809467,chr5:127809473,chr5:127809474,chr5:127809480,chr5:127809491,chr5:127809502,chr5:127809477,chr5:127809506,chr5:127809488,chr5:127809509,chr5:127809512,chr5:127809526,chr5:127809530,chr5:127809531,chr5:127809525,chr5:127809536,chr5:127809537 chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127965261,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127981768,chr5:127989638,chr5:127989638,chr5:127992087,chr5:127992087,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380,chr5:127995380 NA NA chr5:127236092,chr5:127236095,chr5:127236096,chr5:127236097,chr5:127236098,chr5:127236099,chr5:127236100,chr5:127236105,chr5:127236103,chr5:127236106,chr5:127236101,chr5:127236117,chr5:127236120,chr5:127236121,chr5:127236127,chr5:127236123,chr5:127236104,chr5:127236144,chr5:127236124,chr5:127236151,chr5:127236122,chr5:127165336,chr5:127165337,chr5:127165340,chr5:127165344,chr5:127165345,chr5:127165348,chr5:127165349,chr5:127165350,chr5:127165351,chr5:127165332,chr5:127165347,chr5:127165353,chr5:127165355,chr5:127165356,chr5:127165357,chr5:127165341,chr5:127165354,chr5:127165359,chr5:127165360,chr5:127165361,chr5:127165362,chr5:127165363,chr5:127165364,chr5:127165365,chr5:127165366,chr5:127165367,chr5:127165371,chr5:127165374,chr5:127165375,chr5:127165377,chr5:127165380,chr5:127165384,chr5:127165372,chr5:127165390,chr5:127171776,chr5:127171772,chr5:127251014,chr5:127251011,chr5:127145159,chr5:127145165,chr5:127145166,chr5:127145172,chr5:127145183,chr5:127145194,chr5:127145169,chr5:127145198,chr5:127145180,chr5:127145201,chr5:127145204,chr5:127145218,chr5:127145222,chr5:127145223,chr5:127145217,chr5:127145228,chr5:127145229 chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127300953,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127317460,chr5:127325330,chr5:127325330,chr5:127327779,chr5:127327779,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072,chr5:127331072 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 4 75 6226 ENST00000706942.1 ENST00000499346.7 downstream downstream duplicates(2) GGAAAAACTGGAGGCTGTGGACCACAAGGAAGCCAGTGGGGGACCATATGAAAAAATGGTTCTTGTGAAAGACCAG___TGCATCCAGAAATTGCAAGCTGAAGTAAAAGCTTCCCAGGAGCAACTTATAGCCCAG|GTGGGAGACCTCCACAGAACCCTTCCAGCAAGCTGTCTTCTAAAGCAAACAAGAAAAGGAAAGTCTGAG...AAATGAAAAAGCgTCATTTCTCACGTTCTTAAAAGAGAGCACAGATGTTGCATCATCTGGTTAGATACCCTGAGAATAAAATCTGGATCCAGTGAGAGGAAAGATTCTGGGTGCTCATGAAAAAAGAAACAAAACAAAACTTGGGAGCCTCTTGAGAGTGTACAGCATCAG EKLEAVDHKEASGGPYEKMVLVKDQCIQKLQAEVKASQEQLIAQ|vgdlhrtlpascllkqtrkgks NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21996 CCDC192::SLC12A2-DT ENSG00000230561.7::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3739 TRUE 1421 CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127875661:+ chr5:127039053-127277199:+ chr5:127211353:+ SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- chr5:127915322,chr5:127915319 chr5:127992087,chr5:127992087 NA NA chr5:127251014,chr5:127251011 chr5:127327779,chr5:127327779 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 1 0 3 141 14703 ENST00000706942.1 ENST00000657475.3 downstream downstream duplicates(6),mismatches(1),multimappers(1) CTTCAGTCAAGTTCAAAGGGAGTGCTGGACACAGAAAAAGaAAAGTATCTGACCGATTATAAAGTTATTGCTCTTCATTATTTTTGTAATCATGTTAGAAG...TGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAG...CCaAAAAAGcTGCTTTTTGACCaACCAaGCaCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGGCAAGCCGACTGACGGCAAAACGACGTAGCA ELNEKIKTLYEGKPAPR|gmdfllciadtnrrrky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21998 AGR2::AGR3 ENSG00000106541.12::ENSG00000173467.9 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AGR2 ENSG00000106541.12 protein_coding - - chr7:16791811-16833433:- chr7:16833256:- chr7:16831435-16873057:- chr7:16872880:- AGR3 ENSG00000173467.9 protein_coding - - chr7:16859412-16881987:- chr7:16862662:- chr7:16899036-16921611:- chr7:16902286:- chr7:16817229 chr7:16863180 NA NA chr7:16856853 chr7:16902804 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Thioredoxin-like(80%) |Thioredoxin_7(15%) 157 126 296 1316 11104 ENST00000412973.1 ENST00000310398.7 upstream downstream duplicates(256),low_entropy(12),mismatches(15) GAAACATTGCTAACAGGAATTAGATTCACAAGGCCAACAGACAACCCAAAGTCATTAAGCCATGAGAGTGGAATGAATCTATGAAAACTCAATGAAGACAGAACAAGAGAAAAATCTTTTCAGCCACGATGAATTAGGAGAACAAGATGTCAAATTACACTGATGCTGAGTCAAGCTTCTCAAAGCAAGAGATAATCAG|TAAGAAGCCATTAATGGTTATTCATCACCTGGAGGATTGTCAATACTCTCAAG___CACTAAAGAAAGTATTTGCCCAAAATGAAGAAATACAAGAAATGGCTCAGAATAAGTTCATCATGCTAAACCTTATG___CATGAAACCACTGATAAGAATTTATCACCTGATGGGCAATATGTGCCTAGAATCATGTTTGTAG___ACCCTTCTTTAACAGTTAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 21999 ENSG00000250603::SLC12A2 ENSG00000250603.1::ENSG00000064651.14 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3740 TRUE 1422 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- SLC12A2 ENSG00000064651.14 protein_coding + - chr5:128083766-128189677:+ chr5:128130676:- chr5:127419458-127525369:+ chr5:127466368:- chr5:127848946,chr5:127849075,chr5:127849077 chr5:128138547,chr5:128138548,chr5:128138547 NA NA chr5:127184638,chr5:127184767,chr5:127184769 chr5:127474239,chr5:127474240,chr5:127474239 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 220 33 104 30566 817 ENST00000507509.1 unknown upstream downstream duplicates(138),inconsistently_clipped(1),mismappers(3),mismatches(12) AGAGCATTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|AAACAGTTTCACTGTCGCCCACGCTGAAGTGCAGTGGTGCAATCTTGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCGTGCCTCAGCCTCCTGAGCAGCTGAGACTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22002 ENSG00000250603::SLC12A2 ENSG00000250603.1::ENSG00000064651.14 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3740 TRUE 1422 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128141830:+ chr5:127419458-127525369:+ chr5:127477522:+ chr5:127848946,chr5:127849075,chr5:127849075,chr5:127849075,chr5:127849075,chr5:127849075 chr5:128138510,chr5:128138523,chr5:128138511,chr5:128138510,chr5:128138509,chr5:128138481 NA NA chr5:127184638,chr5:127184767,chr5:127184767,chr5:127184767,chr5:127184767,chr5:127184767 chr5:127474202,chr5:127474215,chr5:127474203,chr5:127474202,chr5:127474201,chr5:127474173 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Amino_acid_permease(50%),Solute_carrier_family_12(100%) |AA_permease(35%),AA_permease_2(25%),SLC12(100%) 1 0 1 30566 4387 ENST00000507509.1 ENST00000262461.7 upstream upstream none GTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGG...TAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|GTTCTTGTGTTGTTCGAGATGCCACTGGAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22003 PACSIN2::TTLL1 ENSG00000100266.19::ENSG00000100271.17 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 2046 TRUE 3741 TRUE 1423 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- TTLL1 ENSG00000100271.17 protein_coding - - chr22:43039516-43089419:- chr22:43046573:- chr22:43435522-43485425:- chr22:43442579:- chr22:43013351 chr22:43051805 NA NA chr22:43409357 chr22:43447811 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Tubulin-tyrosine_ligase_family(11%) |TTL(0%) 63 134 102 2249 284 ENST00000263246.8 ENST00000266254.12 upstream downstream duplicates(91),mismatches(4) GTCTGGGCAGGGCTGGGCAGTGCTGCCGGAGCAAAAGCGGTAGCGGGAGCCCGGCCGGAGCTGGGTCTGGAGACGCCGTGGCAGCCTGAACGGAGTGTGCGACGGATTGGGAG|GTGAATGCGTCCCCGTCTCTCACGTCCAGCACTGCCAATGACCGAATCCTCAAGTACAACCTGATTAATGACACCCTCAACATCGCCGTCCCGAATGGTGAAATCCCAGACTGCAAATGGAACAAGTCGCCACCTAAGGAAGTCCTCGGCAATTACGAGATTCT___GTATGATGAAGAATTGGCCCAGGGTGACGGGGCTGACCGGGAGCTGAGAAGCCGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma LUNG,LUNG,UTERUS no_match 43411027|43411027|43411027,43308027|43411027,43411027|43411027|43389626 TRUE|TRUE|TRUE,FALSE|TRUE,TRUE|TRUE|FALSE 43447893|43435911|43442579,43435911|43435911,43447893|43435911|43447893 FALSE|FALSE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22004 PACSIN2::TTLL1 ENSG00000100266.19::ENSG00000100271.17 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3741 TRUE 1423 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- TTLL1 ENSG00000100271.17 protein_coding - - chr22:43039516-43089419:- chr22:43039905:- chr22:43435522-43485425:- chr22:43435911:- chr22:43013351 chr22:43051805 NA NA chr22:43409357 chr22:43447811 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 2 8 25 2249 198 ENST00000263246.8 ENST00000266254.12 upstream downstream duplicates(10),mismatches(1) CAGGGGTCTGGGCAGGGCTGGGCAGTGCTGCCGGAGCAAAAGCGGTAGCGGGAGCCCGGCCGGAGCTGGGTCTGGAGACGCCGTGGCAGCCTGAACGGAGTGTGCGACGGATTGGGAG|GTATGATGAAGAATTGGCCCAGGGTGACGGGGCTGACCGGGAGCTGAGAAGCCGTCAGGGTCAGTCTCTGGGGCCCAGAGCAGGCCGATCGAGAGACTCaGGGAGAGCGGTCCTCACCACCTGGAAGTGAGTCCCACCTGGACCTTATCAAAACTACTCACTCCACCTGGGCCCCTGCTGAAGCCCTATTTTGAAATTTCCCTTTTGTAGAGCTTTTTTCCTTTCCTAAGCCCTGTAAATAAAt unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma LUNG,LUNG,UTERUS no_match 43411027|43411027|43411027,43308027|43411027,43411027|43411027|43389626 TRUE|TRUE|TRUE,FALSE|TRUE,TRUE|TRUE|FALSE 43447893|43435911|43442579,43435911|43435911,43447893|43435911|43447893 FALSE|TRUE|FALSE,TRUE|TRUE,FALSE|TRUE|FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22005 FLOT1::LINC00243 ENSG00000137312.15::ENSG00000214894.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FLOT1 ENSG00000137312.15 protein_coding - - chr6:30727709-30742732:- chr6:30740158:- chr6:30695486-30710509:- chr6:30707935:- LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr6:30736741,chr6:30736755 chr6:30812318,chr6:30812329 NA NA chr6:30704518,chr6:30704532 chr6:30780095,chr6:30780106 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none SPFH_domain_/_Band_7_family(100%)| Band_7(100%)| 62 54 141 4814 704 ENST00000376389.8 ENST00000419357.6 upstream downstream duplicates(104),low_entropy(2),mismatches(52) ATTTGCACTCTTTGGGGAAGGCTCGAACAGCTCAAGTCCAAAAAGATGCACGGATTGGAGAAGCAGAGGCCAAGAGAGATGCTGGGATCCGG___GAAGCTAAAGCCAAGCAGGAAAAGGTGTCTGCTCAGTACCTGAGTGAGATCGAGATGGCCAAGGCACAGAGAGATTACGAACTGAAGAAGGCCGCCTATGACATCGAGGTCAACACCCGCCGAGCACAGGCTGACCTGGCCTATCAGCTTCAG|GCCCTAGAAACAAGAACCAATCCAGCAGCAACAAGCATCTCTGGCAGTCTATCATTTCCCTTCAACTGAAATCAGATCTTCTTAAAGAAATGCTTGGCTCTCAGACTGGGAACGGAAATGTACAAGATGTGCTTCGATATCTGGTCAAATCAGAAACTCAAAAAGCTATCAAAGTCTCTTTGGACTGTGTCAGAAAGAGGTGAAAAGACTCCCACTTGCCAAAGACGGGACAATTTGAGCATTCATAAGA LHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADLAYQLQ|aletrtnpaatsisgslsfpfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22006 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 2047 TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127187785:- chr8:128084939-128239786:- chr8:128200030:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 36 30 151 627 1358 ENST00000641912.1 ENST00000523825.2 upstream downstream duplicates(92),low_entropy(3),mismatches(9) ACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___ATAACACTAACAAAGTTGACCTTAGAATTGGAGTGCCTGGGTTAGAACCCTGCTGGTACCACCTGCTTACT___GCATGCTTCTGATGTGAGTTCAGGAGAAGACACTGGCAAGGACAGCAAAGAACAGGAGAACACTCTAGCTTCCCTGAaAGCATTCAAGGTGCTGTCCAAA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22007 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 2048 TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 5 45 61 1196 1358 ENST00000641912.1 ENST00000523825.2 upstream downstream duplicates(49),low_entropy(1),mismappers(1),mismatches(2) GGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGGGTGGCTGTTATGTAGCAGTAGATAATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22008 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127203163:- chr8:128084939-128239786:- chr8:128215408:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 4 5 71 562 1358 ENST00000641991.1 ENST00000502082.5 upstream downstream duplicates(37),low_entropy(1),mismatches(3) CTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22011 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127179641:- chr8:128084939-128239786:- chr8:128191886:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 151 170 1358 ENST00000641912.1 ENST00000502082.5 upstream downstream duplicates(67),mismatches(6) CGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCaCTGCCACTTACCAG...CTATGCTATTTAAAACTTGCATGATCTTGTGCTAATTAATCAATTTTTGCTTCAGTTTCCGAAACG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22012 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127187797:- chr8:128084939-128239786:- chr8:128200042:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 3 143 627 1358 ENST00000641912.1 ENST00000502082.5 upstream downstream duplicates(62),mismatches(5) CGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___ATAACACTAACAAAGTTGACCTTAGAATTGGAGTGCCTGGGTTAGAACCCTGCTGGTACCACCTGCTTACT___GCATGCTTCTGATGTGAGTTCAGGAGAAGACACTGGCAAGGACAGCAAAGAACAGGAGAACACTCTAGCTTCCCTGAaAGCATTCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22014 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127197475:- chr8:128084939-128239786:- chr8:128209720:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 3 88 332 1358 ENST00000701231.1 ENST00000502082.5 upstream downstream duplicates(43),mismatches(3) CTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG___CATCTGGCATCTTT...GAAATGTGATGTTCAGTGATCCATTTTGCAG___ATTGCAAACTCCTAGAGAAGGGCTCAACAGTGAGTGCTGAGGCTGCACAGAGGAGGAAGGCAGCACAATGATGGAAGGCTTCCTAAAGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22015 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127202042:- chr8:128084939-128239786:- chr8:128214287:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 2 1 87 392 1358 ENST00000641991.1 ENST00000502082.5 upstream downstream duplicates(46),mismatches(3) CACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG___GCTGTGGCTTGCCTTTTCACTTCTTGTGTCCTGTTTAAGAAATATCTGCTATCCCAAG___CATCTGGCATCTTTCTTGACATATGTAGCAGTTGCTTTTTGACAGCTTGCTTCTTCAGTGAATGAAcAAATTAATAAAGAGAAATGTGATGTTCAGTGATCCATTTTGCAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22018 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218815:- chr8:128084939-128239786:- chr8:128231060:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 41 1196 1358 ENST00000641174.1 ENST00000523825.2 upstream downstream duplicates(20),mismatches(1) ATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22021 DNAJB6::PTPRN2 ENSG00000105993.15::ENSG00000155093.20 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157367483:+ chr7:157128075-157210133:+ chr7:157160177:+ PTPRN2 ENSG00000155093.20 protein_coding - + chr7:157539056-158587823:- chr7:157906966:+ chr7:157331750-158380515:- chr7:157699658:+ chr7:157369760 chr7:157895216 NA NA chr7:157162454 chr7:157687908 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none DnaJ_domain(100%)| DnaJ(100%),SRR(100%)| 31 18 53 1995 158 ENST00000262177.9 unknown downstream upstream duplicates(20),low_entropy(1),mismatches(6) GCGGAGGCATATGAAGTGCTGTCGGATG___CTAAGAAACGGGACAcCTATGACAAATATGGCAAAGAAGGATTAAATGGTGGAGGAGGAG___GTGGAAGTCATTTTGACAGTCCATTTGAATTTGGCTTCACATTCCGTAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCATTTTCATTTGACTTCTTTG|AACCAAAGACTCTCACTCAGCAAATCCTGAGATCCCGAGATCCTGACACCCTGACACCTGTTGGAAAGGTTTGGAAGCAGCCATGGAAGCTGTCACCAGTGTTTTATGCTCAGATCTGTGCTGATGTCACACTTTGGACAGCCAAGGGGGCGGGAAGATGAAGCATAAAACC...___GACGTCCAATGGTGTCTCCACCCAAATTCCTG AEAYEVLSDAKKRDtYDKYGKEGLNGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDFF|epktltqqilrsrdpdtltpvgkvwkqpwklspvfyaqicadvtlwtakgagr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22022 MARS1::INHBC ENSG00000166986.15::ENSG00000175189.4 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE TRUE 2049 FALSE NA FALSE NA MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57490644:+ chr12:57869228-57911352:+ chr12:57884427:+ INHBC ENSG00000175189.4 protein_coding + + chr12:57434784-57452062:+ chr12:57449277:+ chr12:57828567-57845845:+ chr12:57843060:+ chr12:57491117 chr12:57449192 NA NA chr12:57884900 chr12:57842975 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Glutathione_S-transferase__C-terminal_domain(100%),Glutathione_S-transferase__N-terminal_domain(100%)|Transforming_growth_factor_beta_like_domain(100%) GST_C(100%),GST_N_5(100%),PH(100%),SH3_1(100%),WW(100%),tRNA-synt_1g(0%)|TGF_beta(100%) 13 26 31 4790 87 ENST00000537638.6 ENST00000309668.3 downstream upstream duplicates(24),low_entropy(1),mismatches(5) TGAAACAGCAAGGTGTCCTGGCTCTCCGGCCTTACCTCCAAAAGCAGCCCCAGCCCAGCCCCGCTGAGGGAAGGGCTGTCACCAATGAGCCTGAG___GAGGAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGGCTGTTACTGCTTGGGAGAAGGGCCTAGAAAGTTTGCCCCCGCTGCGGCCCCAGCAGAATCCAGT|GCCTCTCCACCATCAACCAGACTCGTCTTGATTTTCACTTCTCCTCTGATAGAACTGCTGGTGACAGGGAGGTCCAGCAGGCCAGTCTCATGTTCTTTGTGCAGCTCCCTTCCAATACCACTTGGACCTTGAAAGTGAGAGTCCTTGTGCTGGGTCCACATAATACCAACCTCACCTTGGCTACTCAGTACCTGCTGGAGGTGGATGCCAGTGGCTGGCATCAACTCCCCCTAGGGCCTGAAGCTCAAGCTGCCTGCAGCCAGGGGCACCTGACCCTGGAGCTGGT KQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPv|plhhqpdss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22023 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128135808:+ chr5:127419458-127525369:+ chr5:127471500:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127875538:+ chr5:127039053-127277199:+ chr5:127211230:+ chr5:128138547,chr5:128166992,chr5:128138547,chr5:128138548 chr5:127849077,chr5:127776811,chr5:127848946,chr5:127849075 NA NA chr5:127474239,chr5:127502684,chr5:127474239,chr5:127474240 chr5:127184769,chr5:127112503,chr5:127184638,chr5:127184767 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Amino_acid_permease(35%),Amino_acid_permease_N-terminal(100%)| AA_permease(50%),AA_permease_2(58%),AA_permease_N(100%)| 7 9 48 4162 115 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(21),mismappers(3),mismatches(1) GGGGAATCAGGCAAAACAAGACAGAAATTCTTTCCCTCATGGAAGTTATATTCTAGGGGAATTGAATCAAGATATAGAAACAAGATACTTGATTTTAATTTTTAATGTTTAAAATTGCAGGCTCAGATTGTTCTTTTGGTGATCCTACTTCTTGCTATTGGTGATTTCGTCATAGGAACATTTATCCCACTGGAGAGCAAGAAGCCAAAAGGGTTTTTTGGTTATAAAT|AAACTAAAGCATGAAAAGAAAGTGAAAAAACTACAGACTGATTTGGCAACAGCTAATGCCATCACAGTTCTGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAG___AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22024 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128135808:+ chr5:127419458-127525369:+ chr5:127471500:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128138547,chr5:128166992,chr5:128138547,chr5:128138548 chr5:127849077,chr5:127776811,chr5:127848946,chr5:127849075 NA NA chr5:127474239,chr5:127502684,chr5:127474239,chr5:127474240 chr5:127184769,chr5:127112503,chr5:127184638,chr5:127184767 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Amino_acid_permease(35%),Amino_acid_permease_N-terminal(100%)| AA_permease(50%),AA_permease_2(58%),AA_permease_N(100%)| 7 2 30 4162 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(14),mismatches(2) TGGGAAGCAAAA___...GGGGAATCAGGCAAAACAAGACAGAAATTCTTTCCCTCATGGAAGTTATATTCTAGGGGAATTGAATCAAGATATAGAAACAAGATACTTGATTTTAATTTTTAATGTTTAAAATTGCAGGCTCAGATTGTTCTTTTGGTGATCCTACTTCTTGCTATTGGTGATTTCGTCATAGGAACATTTATCCCACTGGAGAGCAAGAAGCCAAAAGGGTTTTTTGGTTATAAAT|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGGTCTCTGATGAGAATTTGTAGATTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22025 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128138545:+ chr5:127419458-127525369:+ chr5:127474237:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127849072:+ chr5:127039053-127277199:+ chr5:127184764:+ chr5:128166992 chr5:127776811 NA NA chr5:127502684 chr5:127112503 NA NA sense sense unknown intron intron duplication medium none Amino_acid_permease(35%),Amino_acid_permease_N-terminal(100%)| AA_permease(56%),AA_permease_2(65%),AA_permease_N(100%)| 16 19 151 133 270 unknown unknown downstream upstream duplicates(54),mismappers(6),mismatches(9) TCCCTTCTTGCTTCTTTTACCTCAGAGATTGAGGGGATTATCCACATTTTGATTTGCATTTGGGCTAGTCATAACAATTCATTCAGAGGCTCTTGAAACATAATTAGCGAGGTATACAAAAAATGAGACATGAATCAGATCAGATGATCATTTTGATGGTAAACCATTGTCTCATACAAGAAAAGAACACCAAATACTTGAACTGGGAAATATGCAAAAATTTACTCGTTACTTTAACTGAAGAAAAGTTAGGGGTCATGTATACCTATTATTCTTGACCTCAGTTATT|AattAAAAATTAGCAGGGCGTGGTGACAGGTGCCTATAATCTCAGCTACTCGGGAGGCTGAGGTGGGAGAATCAATTGAACCCAAGAGGCAGAGGTTGCAGTGAGCTGAGGTCGCATGCCACTGCACTCCAGCCTAGGCGAAAGAGTGAGACTCTGTCTCAAAAATAAATAAATAAATAAAAGGACATTGAATTTACTTGAAATTAGTAAGCCTAGACTGCCTTATTCTCCCCAGTTCTACAGCCAGGATTCCCACCTCCTCAGCACTCTCAGCTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22026 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128161800:+ chr5:127419458-127525369:+ chr5:127497492:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127875538:+ chr5:127039053-127277199:+ chr5:127211230:+ chr5:128166992 chr5:127776811 NA NA chr5:127502684 chr5:127112503 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease(100%),Amino_acid_permease_N-terminal(100%),Solute_carrier_family_12(17%)| AA_permease(100%),AA_permease_2(100%),AA_permease_N(100%),SLC12(13%)| 0 1 51 5726 115 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(14),mismappers(3),mismatches(1) GATCTGTGGCCATGTACATATG___GGTCCTCGAAGACAAGCCATGAAAGAGATGTCCATCGATCAAGCCAAATATCAGCGATGGCTTATTAAGAACAAAATGA...CCAGTACATGCAGATGACTTGAGAGAAGGTGCACAGTATTTGATGCAG|AAACTAAAGCATGAAAAGAAAGTGAAAAAACTACAGACTGATTTGGCAACAGCTAATGCCATCACAGTTCTGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAG___AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAA PVHADDLREGAQYLMQ|KLKHEKKVKKLQTDLATANAITVLELNEKIKTLYEGKPAPREDSLLEGFCGGLPPVEEGDRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22027 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128148877:+ chr5:127419458-127525369:+ chr5:127484569:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128166992 chr5:127776811 NA NA chr5:127502684 chr5:127112503 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease(75%),Amino_acid_permease_N-terminal(100%)| AA_permease(79%),AA_permease_2(93%),AA_permease_N(100%)| 1 0 31 4202 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(9) ACAACATCTACCCAGCTTTCCAGATGTTTGCTAAAGGTTATGGGAAAAATAATGAACCTCTTCGTGGCTACATCTTAACATTCTTAATTGCACTTGGATTCATCTTAATTG|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGGTCTCTG NIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILI|eDSLLEGFCGGLPPVEEGDRKISLIMELSTQVSLQTERITQLKEVLEEKERKIQQLEAERSPHPPQEVKDPPGCLPEAPVFSTHDIPPVVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22028 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128131206:+ chr5:127419458-127525369:+ chr5:127466898:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128135848,chr5:128138547,chr5:128138548,chr5:128138547,chr5:128166992 chr5:127819946,chr5:127848946,chr5:127849075,chr5:127849077,chr5:127776811 NA NA chr5:127471540,chr5:127474239,chr5:127474240,chr5:127474239,chr5:127502684 chr5:127155638,chr5:127184638,chr5:127184767,chr5:127184769,chr5:127112503 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease(21%),Amino_acid_permease_N-terminal(100%)| AA_permease(40%),AA_permease_2(45%),AA_permease_N(100%)| 1 0 11 7093 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(1) TTAATATCTAGAAGTCTAGGGCCAGAATTTGGTGGTGCAATTGGTCTAATCTTCGCCTTTGCCAACGCTGTTGCAGTTGCTATGTATGTGGTTGGATTTGCAGAAACCGTGGTGGAGTTGCTTAAG|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGG LISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLK|ktacwkgsvevshlwkkviekla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22029 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128084710:+ chr5:127419458-127525369:+ chr5:127420402:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128135848,chr5:128138547,chr5:128138548,chr5:128138547,chr5:128166992 chr5:127819946,chr5:127848946,chr5:127849075,chr5:127849077,chr5:127776811 NA NA chr5:127471540,chr5:127474239,chr5:127474240,chr5:127474239,chr5:127502684 chr5:127155638,chr5:127184638,chr5:127184767,chr5:127184769,chr5:127112503 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease_N-terminal(98%)| AA_permease_N(0%)| 3 0 9 4161 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(2),mismatches(1) CGGGGAAGCCAGCGGCGAGAGCGAGCCGGCTAAAGGCAGCGAGGAAGCCAAGGGCCGCTTCCGCGTGAACTTCGTGGACCCAGCTGCCTCCTCGTCGGCTG...CGGGCCCAACGTGAGCTTCCAGAACGGCGGGGACACGGTGCTGAGCGAGGGCAGCAGCCTGCACTCCGGCGGCGGCGGCGGCAGTGGGCACCACCAGCACTACTATTATGATACCCACACCAACACCTACTACCTGCGCACCTTCGGCCACAACACCATGGACGCTGTGCCCAGGATCGATCACTACCGGCACACAGCCGCGCAGCTGGGCGAGAAGCTGCTCCGGCCTAGCCTGGCGGAGCTCCACGACGAGCTGGAAAAG|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGG GPNVSFQNGGDTVLSEGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELHDELEK|ktacwkgsvevshlwkkviekla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22030 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128114681:+ chr5:127419458-127525369:+ chr5:127450373:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128135848,chr5:128138547,chr5:128138548,chr5:128138547,chr5:128166992 chr5:127819946,chr5:127848946,chr5:127849075,chr5:127849077,chr5:127776811 NA NA chr5:127471540,chr5:127474239,chr5:127474240,chr5:127474239,chr5:127502684 chr5:127155638,chr5:127184638,chr5:127184767,chr5:127184769,chr5:127112503 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease(11%),Amino_acid_permease_N-terminal(100%)| AA_permease(3%),AA_permease_2(1%),AA_permease_N(100%)| 1 0 10 8203 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(1) CGTTGTATGTTAAACATTTGGGGTGTGATGCTTTTCATTAGATTGTCATGGATTGTGGGTCAAGCTGGAATAG___GTCTATCAGTCCTTGTAATAATGATGGCCACTGTTGTGACAACTATCACAGGATTGTCTACTTCAGCAATAGCAACTAATGcATTTGTAAGAGGAG|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGG RCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNaFVRG|eDSLLEGFCGGLPPVEEGDRKISLIMELSTQVSLQTERITQLKEVLEEKERKIQQLEAERSPHPPQEVKDPPGCLPEAPVFSTHDIPPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22031 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128112933:+ chr5:127419458-127525369:+ chr5:127448625:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128135848,chr5:128138547,chr5:128138548,chr5:128138547,chr5:128166992 chr5:127819946,chr5:127848946,chr5:127849075,chr5:127849077,chr5:127776811 NA NA chr5:127471540,chr5:127474239,chr5:127474240,chr5:127474239,chr5:127502684 chr5:127155638,chr5:127184638,chr5:127184767,chr5:127184769,chr5:127112503 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Amino_acid_permease(0%),Amino_acid_permease_N-terminal(100%)| AA_permease(0%),AA_permease_N(100%)| 1 0 9 7816 5482 ENST00000262461.7 ENST00000706942.1 downstream upstream duplicates(2) CCCACACCAACACCTACTACCTGCGCACCTTCGGCCACAACACCATGGACGCTGTGCCCAGGATCGATCACTACCGGCACACAGCCGCGCAGCTGGGCGAG...TGTGGTCACGTATACTGCAGAAAGTAAAGGAGTCGTGAAGTTTaGCTGGATCAAGGGTGTATTA|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGG VVTYTAESKGVVKFsWIKGVL|ktacwkgsvevshlwkkviekla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22042 PRXL2C::ENSG00000224848 ENSG00000158122.12::ENSG00000224848.4 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PRXL2C ENSG00000158122.12 protein_coding - - chr9:96639577-96655317:- chr9:96651390:- chr9:99401859-99417599:- chr9:99413672:- ENSG00000224848 ENSG00000224848.4 lncRNA + - chr9:96687018-96774318:+ chr9:96743647:- chr9:99449300-99536600:+ chr9:99505929:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none AhpC/TSA_antioxidant_enzyme(49%)| AhpC-TSA(100%),AhpC-TSA_2(25%)| 10 4 13 242 17 ENST00000375234.8 unknown upstream downstream duplicates(5) CCGCGGGCAGCGGGTACCGTTCGGCGCGCTGTTCCGGGAGCGCCGCGCCGTGGTGGTGTTCGTGCGG___CATTTCCTGTGTTACATCTGCAAGGAATACGTAGAGGATCTGGCCAAAATCCCCAGGAGTTTCTTACAA___GAAGCAAATGTCACCCTTATAGTGATTGGACAGTCATCCTACCATCATATTGAG___CCTTTTTGCAAGCTGACTGGATATTCTCATGAAATCTATGTCGATCCTGAGAGAGAAATTTATAAAAGATTGGGAATGAAAAGAGGTGAAGAAATTGCTTCCTCAG|CCACACAGGATGGTGCTATATCAAGATCCTCACATCCTACTTGAGACTGAAGAATTTCTGCCCTGAAATTATCATCCTGTGGTAAGGAAGGCCACCAGCAAGAACAGAGCTGGTGGACTGCCCTGGGCCAGTCTCTGGAAGACTTTGATCAAGCCTTGCTCTTCACAGGCACTGAGAGCAATCTTTGAAACCTGAGTCCAAACAGAAGAATAGGTCTCTAGGTGCTGCTCAAGAGTCAGCCAGACACTCTTAACTTGTTGCATAGCACTCTGACCCCTGAGATGGCAATATCATACATCGGAGTGGCTGTG...CTTCTGAGCAGCAGATGAAAATTGTAGTAGTCCATTCTCACACTGCTGAGACTGGGTAATTTATAAAGGAAAGAAGTTTAATTGACTCACAGTTTTGCAAGG RGQRVPFGALFRERRAVVVFVRHFLCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTGYSHEIYVDPEREIYKRLGMKRGEEIASS|atqdgaisrsshpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22044 ENSG00000228613::PXDN ENSG00000228613.1::ENSG00000130508.11 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000228613 ENSG00000228613.1 lncRNA - - chr2:1546665-1620113:- chr2:1617167:- chr2:1550437-1623885:- chr2:1620939:- PXDN ENSG00000130508.11 protein_coding - - chr2:1631887-1744852:- chr2:1635521:- chr2:1635659-1748624:- chr2:1639293:- chr2:1590774 chr2:1636164 NA NA chr2:1594546 chr2:1639936 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |von_Willebrand_factor_type_C_domain(100%) |PSP94(100%),VWC(100%) 5 4 4 23 36 ENST00000438247.1 ENST00000252804.9 upstream downstream duplicates(2) CTCGGTGGCACTGCCCACATGATAAG___GGAGACATGAGACATCAATCAACACATGTAGGATGAACATTGGTTCGGTCTGGAAAGGCGGGACAACTCGAAGCAAAGGCAGGAAGACTCGAAGCAGACGGGGGCTTCCAGGTCATAG|ATAAAGAAACTTGAATCACGGCTCAGTACCACAGAGTGCGTGGATGCCGGGGGCGAATCTCACGCCAACAACACCAAGTGGAAAAAAGATGCATGCACCATTTGTGAATGCAAA___GACGGGCAGGTCACCTGCTTCGTGGAAGCTTGCCCCCC...AGTCTGCTTACAGAAGAGtGCGGAGGAAAAGCCCTAGGCTCCTGGGAGGgTCCTCAGAGTTTGTCTGCTGTGCCATCGTGAGATCGGGTGGCCGATGGaAG...GCTGCGGACTGCAGACCAGGAAACACCCAGAACTCGTGACATTTCATGACAACGTCCAGCTGGTGCTGTTACAGAAGGCAGTGCAGGAGGCTTCCAACCAGAGCATCTGCGGAGAAGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22045 ZNF503-AS1::LRMDA ENSG00000226051.10::ENSG00000148655.16 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF503-AS1 ENSG00000226051.10 lncRNA + + chr10:75243568-75373500:+ chr10:75276896:+ chr10:77003326-77133258:+ chr10:77036654:+ LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:76036008:+ chr10:77191382-78319926:+ chr10:77795766:+ chr10:75282964,chr10:75282963 chr10:75456974,chr10:75456965 NA NA chr10:77042722,chr10:77042721 chr10:77216732,chr10:77216723 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Leucine-rich_repeat(83%) |LRR_9(3%) 0 3 8 16 32 ENST00000670946.1 ENST00000611255.5 downstream upstream duplicates(3),mismappers(1),mismatches(2) CGGCCGGCTAGATTTCGACCTGGACCCTCTCATCTGCCCTTCTCCACCGAGCAGGTGGAAGAGTGGTGGCGGGAATGCGCCAGCTCTGACCTCCCTGCGGTGCGCGCTGCGGGGCTGGGAGCAACTGTGCTGGGTTCTGAGGCCCATGCGGGTGCCTTCTTGGAGCCGCGCCAGCACCAGAAATCGCCCGGGCTCGGAGTCCCAATTAGAGGCGATGGTATCGTTTTACATTCCTAGCATCAGTGTACGAGGCCCAGTTCCTCCACATCCTC?CCAACACGTG|GTCACTGGAAGGACTGAGCGCATTCAGGAGCCTGGAGGAACTCATCTTGGACAACAATCAGCTGGGGGACGACCTTGTGTTGCCAGGGTTACCCAGACTGCATACCTTAACCCTCAACAAGAACCGA___ATCACTGATTTGGAGAACCTGCTGGATCACTTGGCAGAAGTGACACCAGCTCTGGAGTACCTCAGTCTGCTGGGCAACGTGGCCTGTCCCAACGAGCTGGTCAGCcTGGAAAAGGATGAGGAAGACTACAAGAGATACAG___ATGCTTTGTTCTGTACAAGCTGCCCAACTTGAAATTTCTGGATGCCCAGAAAGTAACCAGACAAGAACGAGAGGAGGCGTTGGTCAGAGGAGTCTTCATG...CCAAG___GCTTCTAGTGAGGACGTTGCCAGCTCCCCGGAGCGCCACTACACGCCCTTGCCTTCTGCTTCCAGGGAACTCACCAGTCACCAAG___ATGAAGTTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22046 DMPK::RSPH6A ENSG00000104936.20::ENSG00000104941.8 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3747 TRUE 1426 DMPK ENSG00000104936.20 protein_coding - - chr19:45769709-45782552:- chr19:45777327:- chr19:46272967-46285810:- chr19:46280585:- RSPH6A ENSG00000104941.8 protein_coding - - chr19:45795713-45815308:- chr19:45805016:- chr19:46298971-46318566:- chr19:46308274:- chr19:45776357 chr19:45808909 NA NA chr19:46279615 chr19:46312167 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(100%)|Radial_spokehead-like_protein(80%) Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Radial_spoke(48%) 2 0 9 115 15 ENST00000291270.9 ENST00000221538.8 upstream downstream duplicates(3),mismatches(2) ATTCGCCTATGAAATGTTCTATGGGCAGACGCCCTTCTACGCGGATTCCcCGGCGGAGACCTATGGCAAGATCGTCCACTACAAG___GAGCACCTCTCTCTGCCGCTGGTGGACGAAGGGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATCCCTTCTTCTTTGGCCTCGACTGGGATGGTCTCCGGGACAGCGTGCCCCCCTTTACACCGGATTTCGAAGGTGCCACCGACACATGCAACTTCGACTTGGTGGAGGACGGGCTCACTGCCATGGTGAGCGGGGGCGGG|GGGGAGACACCAGTGCCCAACATCATGGAGACTGCCTTCTACTTCGAGCAGGCCGGCGTCGGCCTGAGCTCGGACGAGAGCTTCCGCATTTTCCTGGCCATGAAACAGCTGGTGGAGCAGCAGCCCATCCACACCTGTCGCTTCTGGGGCAAGATCCTGGGAATCAAACGCAGCTACCTGGTGGCCG FAYEMFYGQTPFYADSpAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLCPPETRLGRGGAGDFRTHPFFFGLDWDGLRDSVPPFTPDFEGATDTCNFDLVEDGLTAMVSGGG|GETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Myotonin-protein kinase AGC DMPK GEK Q09013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22047 DMPK::RSPH6A ENSG00000104936.20::ENSG00000104941.8 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3747 TRUE 1426 DMPK ENSG00000104936.20 protein_coding - - chr19:45769709-45782552:- chr19:45777342:- chr19:46272967-46285810:- chr19:46280600:- RSPH6A ENSG00000104941.8 protein_coding - - chr19:45795713-45815308:- chr19:45805016:- chr19:46298971-46318566:- chr19:46308274:- chr19:45776357 chr19:45808909 NA NA chr19:46279615 chr19:46312167 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(100%)|Radial_spokehead-like_protein(80%) Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Radial_spoke(48%) 1 1 8 126 15 ENST00000447742.6 ENST00000221538.8 upstream downstream duplicates(3),mismatches(2) GCACCTCTCTCTGCCGCTGGTGGACGAAGGGGTCCCTGAGGAGGCTCGAGACTTCATTCAGCGGTTGCTGTGTCCCCCGGAGACACGGCTGGGCCGGGGTGGAGCAGGCGACTTCCGGACACATCCCTTCTTCTTTGGCCTCGACTGGGATGGTCTCCGGGACAGCGTGCCCCCCTTTACACCGGATTTCGAAGGTGCCACCGACACATGCAACTTCGACTTGGTGGAGGACGGGCTCACTGCCATG|GGGGAGACACCAGTGCCCAACATCATGGAGACTGCCTTCTACTTCGAGCAGGCCGGCGTCGGCCTGAGCTCGGACGAGAGCTTCCGCATTTTCCTGGCCATGAAACAGCTGGTGGAGCAGCAGCCCATCCACACCTGTCGCTTCTGGGGCAAGATCCTGGGAATCAAACGCAGCTACCTGGTGGCCGAGGTGG HLSLPLVDEGVPEEARDFIQRLLCPPETRLGRGGAGDFRTHPFFFGLDWDGLRDSVPPFTPDFEGATDTCNFDLVEDGLTAM|GETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Myotonin-protein kinase AGC DMPK GEK Q09013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22048 CTTNBP2::CFTR ENSG00000077063.11::ENSG00000001626.18 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTTNBP2 ENSG00000077063.11 protein_coding - + chr7:117710651-117874139:- chr7:117801044:+ chr7:117350705-117514193:- chr7:117441098:+ CFTR ENSG00000001626.18 protein_coding + + chr7:117287120-117715971:+ chr7:117642438:+ chr7:116927174-117356025:+ chr7:117282492:+ chr7:117808130 chr7:117629264 NA NA chr7:117448184 chr7:117269318 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |ABC_transporter(47%) |ABC_tran(29%) 6 2 1 12 1171 unknown ENST00000003084.11 downstream upstream duplicates(3) TTACATTCTAGTGGATGAGGACAAAA___GAAACAGTGCTCCTGGAAGAAATACCTAATTCCAAGCATTGGATTAAAGAAAACACAAAATGAGCCTGGAGTATCTTGCTGCAAGTGCTAAAAAATGATGAGAATATATAGAAGAAGCCAGCTTAAGAGGGCTCCCAGTGGCCAAATCGGGGACAGATAGTGATG|GTGGGCCTCTTGGGAAGAACTGGATCAGGGAAGAGTACTTTGTTATCAGCTTTTTTGAGACTACTGAACACTGAAGGAGAAATCCAGATCGATGGTGTGTCTTGG...CAGTGGAGGAAAGCCTTTGGAGTGATACCACAG___AAAGTATTTATTTTTTCTGGAACATTTAGAAAAAACTTGGATCCCTATGAACAGTGGAGTGATCAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22066 ENSG00000250603::CCDC192 ENSG00000250603.1::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3751 TRUE 1427 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- CCDC192 ENSG00000230561.7 protein_coding + - chr5:127703361-127941507:+ chr5:127912841:- chr5:127039053-127277199:+ chr5:127248533:- chr5:127838564 chr5:127923801 NA NA chr5:127174256 chr5:127259493 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' medium none none none 45 51 97 30566 847 ENST00000507509.1 unknown upstream downstream duplicates(71),mismatches(14) TTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|GTATAAGCCTGGTTTTGCAGTATATACAGCAAGCCATAGGAAGTTTCATTGGAAGCGTTGTGGAACTCATTGAGAGTTGAATGGAAGAAAGAACCTATAGCAGAAATTTCCAGTTGCTTCAAATACCTAAGCAGAGAGTGAAGAGTTCCTCCTCCCCAG___GGACGGGGGTCTCACTATGTTGCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22067 ENSG00000250603::CCDC192 ENSG00000250603.1::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3751 TRUE 1427 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:127838403,chr5:127838509,chr5:127838114,chr5:127838267,chr5:127838199,chr5:127843085,chr5:127842412,chr5:127842433,chr5:127841956,chr5:127841919,chr5:127842021,chr5:127842033,chr5:127842098,chr5:127842111,chr5:127848937,chr5:127849068,chr5:127849013,chr5:127848660,chr5:127848872,chr5:127849248,chr5:127848861,chr5:127848719,chr5:127848760,chr5:127848754,chr5:127848926,chr5:127848882,chr5:127843435,chr5:127843076,chr5:127843083,chr5:127842910,chr5:127842916,chr5:127838423,chr5:127838466,chr5:127838085,chr5:127838227,chr5:127838248,chr5:127842429,chr5:127842449,chr5:127843150,chr5:127843220,chr5:127843351,chr5:127843441,chr5:127841972,chr5:127841972,chr5:127842002,chr5:127842008,chr5:127842060,chr5:127842076,chr5:127849007,chr5:127849045,chr5:127849051,chr5:127848606,chr5:127848612,chr5:127849273,chr5:127848675,chr5:127848578,chr5:127848782,chr5:127848818,chr5:127848898,chr5:127848902,chr5:127851090,chr5:127851090,chr5:127851090 chr5:127838423,chr5:127838466,chr5:127838085,chr5:127838227,chr5:127838248,chr5:127842330,chr5:127842429,chr5:127842449,chr5:127841972,chr5:127841972,chr5:127842002,chr5:127842008,chr5:127842060,chr5:127842076,chr5:127849007,chr5:127849045,chr5:127849051,chr5:127848606,chr5:127848612,chr5:127849273,chr5:127848675,chr5:127848578,chr5:127848782,chr5:127848818,chr5:127848898,chr5:127848902,chr5:127889407,chr5:127889489,chr5:127889498,chr5:127889793,chr5:127889793,chr5:127838403,chr5:127838509,chr5:127838114,chr5:127838267,chr5:127838199,chr5:127842412,chr5:127842433,chr5:127842488,chr5:127849068,chr5:127889652,chr5:127889884,chr5:127841956,chr5:127841919,chr5:127842021,chr5:127842033,chr5:127842098,chr5:127842111,chr5:127848937,chr5:127849068,chr5:127849013,chr5:127848660,chr5:127848872,chr5:127849248,chr5:127848861,chr5:127848719,chr5:127848760,chr5:127848754,chr5:127848926,chr5:127848882,chr5:127831769,chr5:127831736,chr5:127831710 NA NA chr5:127174095,chr5:127174201,chr5:127173806,chr5:127173959,chr5:127173891,chr5:127178777,chr5:127178104,chr5:127178125,chr5:127177648,chr5:127177611,chr5:127177713,chr5:127177725,chr5:127177790,chr5:127177803,chr5:127184629,chr5:127184760,chr5:127184705,chr5:127184352,chr5:127184564,chr5:127184940,chr5:127184553,chr5:127184411,chr5:127184452,chr5:127184446,chr5:127184618,chr5:127184574,chr5:127179127,chr5:127178768,chr5:127178775,chr5:127178602,chr5:127178608,chr5:127174115,chr5:127174158,chr5:127173777,chr5:127173919,chr5:127173940,chr5:127178121,chr5:127178141,chr5:127178842,chr5:127178912,chr5:127179043,chr5:127179133,chr5:127177664,chr5:127177664,chr5:127177694,chr5:127177700,chr5:127177752,chr5:127177768,chr5:127184699,chr5:127184737,chr5:127184743,chr5:127184298,chr5:127184304,chr5:127184965,chr5:127184367,chr5:127184270,chr5:127184474,chr5:127184510,chr5:127184590,chr5:127184594,chr5:127186782,chr5:127186782,chr5:127186782 chr5:127174115,chr5:127174158,chr5:127173777,chr5:127173919,chr5:127173940,chr5:127178022,chr5:127178121,chr5:127178141,chr5:127177664,chr5:127177664,chr5:127177694,chr5:127177700,chr5:127177752,chr5:127177768,chr5:127184699,chr5:127184737,chr5:127184743,chr5:127184298,chr5:127184304,chr5:127184965,chr5:127184367,chr5:127184270,chr5:127184474,chr5:127184510,chr5:127184590,chr5:127184594,chr5:127225099,chr5:127225181,chr5:127225190,chr5:127225485,chr5:127225485,chr5:127174095,chr5:127174201,chr5:127173806,chr5:127173959,chr5:127173891,chr5:127178104,chr5:127178125,chr5:127178180,chr5:127184760,chr5:127225344,chr5:127225576,chr5:127177648,chr5:127177611,chr5:127177713,chr5:127177725,chr5:127177790,chr5:127177803,chr5:127184629,chr5:127184760,chr5:127184705,chr5:127184352,chr5:127184564,chr5:127184940,chr5:127184553,chr5:127184411,chr5:127184452,chr5:127184446,chr5:127184618,chr5:127184574,chr5:127167461,chr5:127167428,chr5:127167402 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 29 9 36 30566 5482 ENST00000507509.1 ENST00000706942.1 upstream upstream duplicates(20),mismatches(3) TAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCAGCCTGCTGGCCCATCCTGCAGATTTAGAACTGAAAACTACATCAACTAATTTGCCTGCATTCCCACTTTACCgGCCAGCCCTACAGCTTTCAAACTTGCCAGCCCCTACAGTCAT|AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22068 ENSG00000250603::CCDC192 ENSG00000250603.1::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3751 TRUE 1427 ENSG00000250603 ENSG00000250603.1 lncRNA - - chr5:127838486-127857804:- chr5:127857614:- chr5:127174178-127193496:- chr5:127193306:- CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127875538:+ chr5:127039053-127277199:+ chr5:127211230:+ chr5:127838403,chr5:127838509,chr5:127838114,chr5:127838267,chr5:127838199,chr5:127842412,chr5:127842433,chr5:127841956,chr5:127841919,chr5:127842021,chr5:127842033,chr5:127842098,chr5:127842111,chr5:127848937,chr5:127849068,chr5:127849013,chr5:127848660,chr5:127848872,chr5:127849248,chr5:127848861,chr5:127848719,chr5:127848760,chr5:127848754,chr5:127848926,chr5:127848882,chr5:127838423,chr5:127838466,chr5:127838085,chr5:127838227,chr5:127838248,chr5:127842429,chr5:127842449,chr5:127841972,chr5:127841972,chr5:127842002,chr5:127842008,chr5:127842060,chr5:127842076,chr5:127849007,chr5:127849045,chr5:127849051,chr5:127848606,chr5:127848612,chr5:127849273,chr5:127848675,chr5:127848578,chr5:127848782,chr5:127848818,chr5:127848898,chr5:127848902,chr5:127851090,chr5:127851090,chr5:127851090 chr5:127838423,chr5:127838466,chr5:127838085,chr5:127838227,chr5:127838248,chr5:127842429,chr5:127842449,chr5:127841972,chr5:127841972,chr5:127842002,chr5:127842008,chr5:127842060,chr5:127842076,chr5:127849007,chr5:127849045,chr5:127849051,chr5:127848606,chr5:127848612,chr5:127849273,chr5:127848675,chr5:127848578,chr5:127848782,chr5:127848818,chr5:127848898,chr5:127848902,chr5:127838403,chr5:127838509,chr5:127838114,chr5:127838267,chr5:127838199,chr5:127842412,chr5:127842433,chr5:127841956,chr5:127841919,chr5:127842021,chr5:127842033,chr5:127842098,chr5:127842111,chr5:127848937,chr5:127849068,chr5:127849013,chr5:127848660,chr5:127848872,chr5:127849248,chr5:127848861,chr5:127848719,chr5:127848760,chr5:127848754,chr5:127848926,chr5:127848882,chr5:127831769,chr5:127831736,chr5:127831710 NA NA chr5:127174095,chr5:127174201,chr5:127173806,chr5:127173959,chr5:127173891,chr5:127178104,chr5:127178125,chr5:127177648,chr5:127177611,chr5:127177713,chr5:127177725,chr5:127177790,chr5:127177803,chr5:127184629,chr5:127184760,chr5:127184705,chr5:127184352,chr5:127184564,chr5:127184940,chr5:127184553,chr5:127184411,chr5:127184452,chr5:127184446,chr5:127184618,chr5:127184574,chr5:127174115,chr5:127174158,chr5:127173777,chr5:127173919,chr5:127173940,chr5:127178121,chr5:127178141,chr5:127177664,chr5:127177664,chr5:127177694,chr5:127177700,chr5:127177752,chr5:127177768,chr5:127184699,chr5:127184737,chr5:127184743,chr5:127184298,chr5:127184304,chr5:127184965,chr5:127184367,chr5:127184270,chr5:127184474,chr5:127184510,chr5:127184590,chr5:127184594,chr5:127186782,chr5:127186782,chr5:127186782 chr5:127174115,chr5:127174158,chr5:127173777,chr5:127173919,chr5:127173940,chr5:127178121,chr5:127178141,chr5:127177664,chr5:127177664,chr5:127177694,chr5:127177700,chr5:127177752,chr5:127177768,chr5:127184699,chr5:127184737,chr5:127184743,chr5:127184298,chr5:127184304,chr5:127184965,chr5:127184367,chr5:127184270,chr5:127184474,chr5:127184510,chr5:127184590,chr5:127184594,chr5:127174095,chr5:127174201,chr5:127173806,chr5:127173959,chr5:127173891,chr5:127178104,chr5:127178125,chr5:127177648,chr5:127177611,chr5:127177713,chr5:127177725,chr5:127177790,chr5:127177803,chr5:127184629,chr5:127184760,chr5:127184705,chr5:127184352,chr5:127184564,chr5:127184940,chr5:127184553,chr5:127184411,chr5:127184452,chr5:127184446,chr5:127184618,chr5:127184574,chr5:127167461,chr5:127167428,chr5:127167402 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none none 0 1 5 30566 115 ENST00000507509.1 ENST00000706942.1 upstream upstream none CATTAAGGCAGAGGAAACACTGTGTGTAAAGGTCTTGCAATGGAAAGAGAAATG___GCCTTAGAAGCAAAGACTGAAGATTTCTGAAGAAGAAGCAATCATGCCTCAATAAAGCAACCTAAGAAACCCTGCCTGAGTTTCCA...TTTCAAACTTGCCAGCCCCTACAGTCAT|AAACTAAAGCATGAAAAGAAAGTGAAAAAACTACAGACTGATTTGGCAACAGCTAATGCCATCACAGTTCTGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAG___AAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22069 SLC12A2::SLC12A2-DT ENSG00000064651.14::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC12A2 ENSG00000064651.14 protein_coding + - chr5:128083766-128189677:+ chr5:128130557:- chr5:127419458-127525369:+ chr5:127466249:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- chr5:128128671,chr5:128128675 chr5:127972047,chr5:127972048 NA NA chr5:127464363,chr5:127464367 chr5:127307739,chr5:127307740 NA NA antisense sense unknown intron exon/splice-site deletion/read-through/3'-3' medium none none none 31 18 113 1030 14703 unknown ENST00000657475.3 upstream downstream duplicates(121),low_entropy(3),mismappers(184),mismatches(12),multimappers(6) TCAtAAACAGTTTCACTGTCGCCCACGCTGAAGTGCAGTGGTGCAATCTTGGTTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCGTGCCTCAGCCTCCTGAGCAGCTGAGACTACAG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGGCAAGCCGACTGACGGCAAAACGACGTAGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22070 ST14::SLC12A2-DT ENSG00000149418.11::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ST14 ENSG00000149418.11 protein_coding + + chr11:130159782-130210362:+ chr11:130200137:+ chr11:130029677-130080257:+ chr11:130070032:+ SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),SEA_domain(100%),Trypsin(21%)| CUB(100%),CUB_2(100%),Ldl_recept_a(100%),SEA(100%),Trypsin(1%)| 36 28 40 2342 14703 ENST00000278742.6 ENST00000657475.3 downstream downstream duplicates(28),mismatches(12) ACGAGGCCTCCTGCCCCAAGG___TGAACGTCGTCACTTGTACCAAACACACCTACCGCTGCCTCAATGGGCTCTGCTTGAGCAAGGGCAACCCTGAGTGTGACGGGAAGGAGGACTGTAGCGACGGCTCAGATGAGAAGGACTGCG___ACTGTGGGCTGCGGTCATTCACGAGACAGGCTCGTGTTGTTGGGGGCACGGATGCGGATGAGGGCGAGTGGCCCTGGCAGGTAAGCCTGCATGCTCTGGGCCAGGGCCACATCTGCGGTGCTTCCCTCATCTCTCCCAACTGGCTGGTCTCTGCCGCACACTGCTACATCGATGACAGAGGATTCAG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCcTTTTGACCCACCACGCCCCCTATCCTGCCCCCATATAAACCCCAAACCCCAACCTCCAGAGCATACCAGCAGGTGAGGAGATACGAGG EASCPKVNVVTCTKHTYRCLNGLCLSKGNPECDGKEDCSDGSDEKDCDCGLRSFTRQARVVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFr|ngfssvyc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22074 CFAP69::GTPBP10 ENSG00000105792.19::ENSG00000105793.16 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CFAP69 ENSG00000105792.19 protein_coding + + chr7:90245174-90311063:+ chr7:90307854:+ chr7:89874488-89940377:+ chr7:89937168:+ GTPBP10 ENSG00000105793.16 protein_coding + + chr7:90335223-90391453:+ chr7:90352816:+ chr7:89964537-90020767:+ chr7:89982130:+ chr7:90308247 chr7:90345629 NA NA chr7:89937561 chr7:89974943 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none |50S_ribosome-binding_GTPase(100%),GTP1/OBG(100%) |FeoB_N(100%),GTP1_OBG(100%),MMR_HSR1(100%) 3 9 7 53 946 ENST00000412839.5 ENST00000222511.11 downstream upstream duplicates(12),mismatches(3),multimappers(1) TGAAGATTTTGTCACCCTTTGTATCATACATAGATATCTTGATTTTAAA___...CAAAA___ATACAGGCCACGCACAAGCAAAGAGAGCTGGCTAATAAATCATGGGAAGATTTCTTGGCTAGAACATCAAACGCTAAAACGTTAAAG|TATGGAAATTTCATCGATAAGCTAAGACTCTTCACCAGGGGAGGATCCGGTGGAATGGGTTATCCTCGTTTAGGTGGAGAAGGTGGAAAAGGTGGTGATGTCTGGGTTGTAGCCCAGAACAGAATGACTTTAAAACAACTTAAAGACAGGTATCCTCGGAAACGGTTTGTGGCTGGAGTAGGAGCAAACAGCAA___AATTAGTGCACTGAAAGGCTCCAAAGGAAAAGACTGgGAAATCCCTGTGCCTGTGGGTATTTCAGTAACTGATGAAAATGGTAAAATTATAG___GAGAACTCAgTAAAGAAAATGACAGAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22075 PCAT1::CASC19 ENSG00000253438.5::ENSG00000254166.4 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127244784:+ chr8:127568568-128431295:+ chr8:128257029:+ CASC19 ENSG00000254166.4 lncRNA - + chr8:127072694-127227541:- chr8:127182858:+ chr8:128084939-128239786:- chr8:128195103:+ chr8:127292938,chr8:127292937 chr8:127174770,chr8:127174766 NA NA chr8:128305183,chr8:128305182 chr8:128187015,chr8:128187011 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' medium none none none 6 3 10 596 157 ENST00000644021.1 unknown downstream upstream duplicates(14) CAGGTTGTGTGTGCCCCTTGAGGCGTTCATCCAGCACTGTTTCAGAGAAATCCCTATTTCAATCTATTCCTATACGTTAGTTATTGAAAAGCAATAGACAATCACAAAAAACAAGTTGACCTTTTTGTGTTCCTTGAGCCAAAGGGCCCTCATGACTGGGCCTCACACCGAATAACTCGTTACAAAAAGAGCTAGGGTCCCAGACTGCGCCAAAGCTTCAGGAGACTGCTCCTCGTCTGTGCACAGATGAGTGGCCAACTCTGGAGCCCAGGTTGTTGCTTCCTAGTCTGGTGGTGAATCCTTCATAGTCTG|CATTAGAAAAAAACTACTTTAAATTTCATCTGGAACCAAAAAAGAGCCCATATAGCCAAGACAATCCTAAGCAAAAAGAACAAAGCTGGAGGCATCATACTACCTGACTTCAAACTATACTACAAGGCTACAGTAACCAAAACAGCATGGTACTGGcACCAAAACAGATATATAGACCAATGAAACAGAGACCTCAGAAATAACACCACACATCTACAACCATCTGACCTTcaAtAAACCTGACAAAAACAAGCAATGGGGAAAGGACTTTCTATTTAATAAATGGTGCTAGGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22088 ADAP1::C7orf50 ENSG00000105963.15::ENSG00000146540.15 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAP1 ENSG00000105963.15 protein_coding - - chr7:897900-955407:- chr7:954396:- chr7:937537-995043:- chr7:994032:- C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1000551:- chr7:1036622-1177896:- chr7:1040187:- chr7:946779 chr7:1002333 NA NA chr7:986415 chr7:1041969 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Putative_GTPase_activating_protein_for_Arf(19%)|WKF_domain(92%) ArfGap(2%)|WKF(23%) 2 6 1 1594 1507 ENST00000649206.1 ENST00000357429.10 upstream downstream none GGCGCATCGCGGCCATGGCCAAGGAGCGGCGCAGGGCGGTCCTGGAGCTGCTGCAGCGGCCGGGGAACGCGCGCTGCGCGGACTGCGGCGCCCCGG|ATGGGCCCAAAAGCACAAGAACTGGAGGTTTCAGAAGACGAGGCAGACGTGGCTCCTGCTGCACATGTATGACAGTGACAAG___GTTCCCGATGAGCACTTCTCCACCCTGCTGGCCTACCTGGAGGGGCTGCAGGGCCGGGCCCGAGAGCTGACGGTGCAGAAGGCGGAAGCCCTGATGCGGGAGCTGGATGAGGAGGGCTCTGATCCCCCCCTGCCGGGGAGGGCCCAGCGCATCCGACAGGTGCTGCAGCTGCTCTCCTAGTGGGTTCAGCGCGGGGCGGGG...TCCTCCGGTGGTGGGGGCCGGGATCACCAGCACCAGAGCCTCGCAAGGGCCCCTTCCCTCCTCCAGACCCTCCTTGGCCGGTGACGGCTGTGACAGTGATG MAKERRRAVLELLQRPGNARCADCGAP|dgpkstrtggfrrrgrrgscctcmtvtrfpmstsppcwptwrgcragpes* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22091 MARCHF3::SLC12A2-DT ENSG00000173926.6::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3758 FALSE NA MARCHF3 ENSG00000173926.6 protein_coding - - chr5:126867714-127030558:- chr5:127030350:- chr5:126203406-126366250:- chr5:126366042:- SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 2 1 5 419 14703 ENST00000308660.6 ENST00000657475.3 upstream downstream duplicates(1),mismatches(1) CGTGAATTGTCAGCGCGCTGTGGGCGACTGTGTGGCCGCGGCGGCCGCCAGGCTTGCCGCACTCCCCCTGAGGTGCCCGCCGGAACCAATGTGCCCTGGTCCACTGGGCCGTGAGCAGCCACCGACTGGGGGCAACTTGGCACTTAGAACCGCAGCAGGGACGTCGGTTTGCTATCGGGACTCGGCGAGGACG|GAATGGATTTTCTTCTGTGTATTGCTGACACGAACAGGAGACGGAAATACTGAGTAGAAGAGGGCGGTTCCCTGGCTAAGGCCCCACCCTCAAGCCTGGATACCCGCGGCCCTAAATGAGAAGAGGCGTTTCTGTTTGGGGCCCAAAAAGTTGCTTTTTG...ATTCATCCTTCAAGTCCGTGTGTGACCCGATTTTTCCTGGATTCTGGAAAAGAGCTCGGAATACAGAAAGCTGTCCCCTGGTCCTTTGCCCTTGTGAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22119 MSRB3-AS1::MSRB3 ENSG00000250748.6::ENSG00000174099.12 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MSRB3-AS1 ENSG00000250748.6 lncRNA - + chr12:65466820-65642372:- chr12:65533927:+ chr12:65860600-66036152:- chr12:65927707:+ MSRB3 ENSG00000174099.12 protein_coding + + chr12:65278643-65491430:+ chr12:65453728:+ chr12:65672423-65885210:+ chr12:65847508:+ chr12:65534094,chr12:65534093 chr12:65389926,chr12:65389917 NA NA chr12:65927874,chr12:65927873 chr12:65783706,chr12:65783697 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |SelR_domain(54%) |SelR(21%) 0 3 0 0 19 unknown ENST00000355192.8 downstream upstream duplicates(1) TTGGAAGATGCCTTTTTAGTGCAAGCAAAATTCCTGGGTTGCAG|GTTGGCCTTCATTCCACGATGTGATCAATTCTGAGGCAATCACATTCACAGATGACTTTTCCTATGGGATGCACAGGGTGGAAACAAGCTGCTCTCAG___TGTGGTGCTCACCTTGGGCACATTTTTGATGATGGGCCTCGTCCAACTGG...GGCACCGCCGAGGGAGGCAGTGGGGTCGCCAGCCCGGCCCAGGCAGACAAAGCGGAGCTCTAGAGTAATGGAGAGTGATGGAAACAAAGTGTACTTAATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22195 VPS13B::LINC00534 ENSG00000132549.20::ENSG00000253394.7 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3770 TRUE 1428 VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99143165:+ chr8:100025494-100889808:+ chr8:100155393:+ LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90539338:+ chr8:91233569-91700091:+ chr8:91551566:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none N-terminal_region_of_Chorein_or_VPS13(100%)| Chorein_N(100%)| 10 8 14 75 22 ENST00000357162.7 ENST00000671657.1 downstream upstream duplicates(3),mismappers(1) ATGGAGAACACTAGTGGCAAAG___GTTCCACAAATCAACAAGACTTTTCTTCAGGGAAAAGTGAAGATTTGGGAACAGTTCAGGAGAAGTCCACCAAAAGCCTTGTTATAGGTCCTCTTGATTTTCGTTTGGATAGCAGTGCGGTGCATAGGATTTTGAAAATGATTGTGTGTGCCTTGGAACATGAATATGAACCATATAGCAGGCTAAAATCAG|ATTGTTCCTGTAGAGACAATAGATGCTGTAATGCAGAAATTGAGAGAtGGTATCAATAGATATTATGGGAACTCACTAAATTCAGACTGTACAGGAAAAGAATGTTTCAGAAGAGTAAAAGACTATTTTGGAATGAATTATAGAGTATTTTTTAAAGAAATGTAATTTTCTTCCTGTTTCCTTCCTGTTTATCCACATTTACAGAAAATGTTTACAGGTAATTTAAGAGACTCATTATCATTTGAAAAATTTTCTGATCCTC MENTSGKGSTNQQDFSSGKSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCALEHEYEPYSRLKS|dcscrdnrccnaeierwyq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22196 VPS13B::LINC00534 ENSG00000132549.20::ENSG00000253394.7 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3770 TRUE 1428 VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99143165:+ chr8:100025494-100889808:+ chr8:100155393:+ LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90566489:+ chr8:91233569-91700091:+ chr8:91578717:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none N-terminal_region_of_Chorein_or_VPS13(100%)| Chorein_N(100%)| 1 1 1 75 2 ENST00000357162.7 ENST00000658299.1 downstream upstream none CTTGGATTCAACTCATCATAAG___GAGACATACACTGAGATAGCTGGAATGCAACGGTTTGGGGCTTTTTATATGGATTACCTGTATACAATGGAGAACACTA...GTGAAGATTTGGGAACAGTTCAGGAGAAGTCCACCAAAAGCCTTGTTATAGGTCCTCTTGATTTTCGTTTGGATAGCAGTGCGGTGCATAGGATTTTGAAAATGATTGTGTGTGCCTTGGAACATGAATATGAACCATATAGCAGGCTAAAATCAG|CTTATGTTGACACATCGTTCTAGGAAGAAAACAGAACATTTCTGCTCATCAGTGTTTTGCA___GTAGGAGATAAAAACTATCATGTGGAAGATGCCCTCCCTGTGCCAAGAGAAAAGAAACATTCTTCCATGAAGACTCATAaCCGA EDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCALEHEYEPYSRLKS|ayvdtsf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22202 YARS1::S100PBP ENSG00000134684.13::ENSG00000116497.18 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA YARS1 ENSG00000134684.13 protein_coding - - chr1:32775237-32818031:- chr1:32817188:- chr1:33240838-33283632:- chr1:33282789:- S100PBP ENSG00000116497.18 protein_coding + - chr1:32816767-32858875:+ chr1:32832756:- chr1:33282368-33324476:+ chr1:33298357:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none tRNA_synthetases_class_I_(W_and_Y)(2%)| tRNA-synt_1b(0%)| 6 14 4 1633 34 ENST00000675785.2 unknown upstream downstream duplicates(1),mismatches(1) CGCGTGACAGTTCCCGGCACGCGGCGGCGACGGTGACCCAGGAAGGGGCTCTGGTGCCGGGCTGAGCGGGGGAAGCAGGGGTAGCGGAGCCATGGGGGACGCTCCCAGCCCTGAAGAGAAACTGCACCTTATCACCCGGAACCTGCAG|GTTAAATGCAATAAACATCTCAAAAGGAAGGAGGACAAGAAGTACTACGCTCCCCTTTTGTGCTTCTGGCTGCACTATAATTCACATACAAATGGAGGAAAGGTGAAGAACATACCACCCCCGCCCTTGCAATAAG___CTCCAGCAAGGAGTCATCCAATCCATCCTCATCCAAGGAATCCCAAGAAAATGGGGCACCGTCTTTAGGCAAGAGAGAG MGDAPSPEEKLHLITRNLQ|vkcnkhlkrkedkkyyapllcfwlhynshtnggkvknipppplq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22205 SCYL1::FRMD8 ENSG00000142186.18::ENSG00000126391.14 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2054 TRUE 3772 TRUE 1429 SCYL1 ENSG00000142186.18 protein_coding + + chr11:65525077-65538704:+ chr11:65536334:+ chr11:65292548-65306175:+ chr11:65303805:+ FRMD8 ENSG00000126391.14 protein_coding + + chr11:65386621-65413525:+ chr11:65393573:+ chr11:65154092-65180996:+ chr11:65161044:+ chr11:65536524 chr11:65391585 NA NA chr11:65303995 chr11:65159056 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein_kinase_domain(100%)|FERM_central_domain(100%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|FERM_M(100%) 5 4 11 303 281 ENST00000525364.5 ENST00000317568.10 downstream upstream duplicates(1),mismatches(1) TTGCACCGTCCCGGGTTGCGGGTGTCCTGGGCTTTGCTGCCACCCACAACCTCTACTCAATGAACGACTGTGCCCAGAAGATCCTGCCTGTGCTCTGCGGTCTCACTGTAGATCCTGAGAAATCCGTGCGAGACCAG___GCCTTCAAGGCCATTCGGAGCTTCCTGTCCAAATTGGAGTCTGTGTCGGAGGACCCGACCCAGCTGGAGGAAGTGG|AGGTGCAGCTGAAACCCAAGCACCAGCCCTACAAGCTGGGACGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAGTGCCCCAGAtGATGACGTGGCCATGG___ATGAGCCTTTCCTGCAGTTCCGAAGGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAG___ATCCATGACGAGGAGGTCCTGCGGCTGCTCTATG APSRVAGVLGFAATHNLYSMNDCAQKILPVLCGLTVDPEKSVRDQAFKAIRSFLSKLESVSEDPTQLEEV|eVQLKPKHQPYKLGRQWPELLLRFTSAPDDDVAMDEPFLQFRRNVFFPKRRELQIHDEEVLRLLY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE N-terminal kinase-like protein Other SCY1 Q96KG9 FALSE NA NA NA NA NA NA TRUE Breast,Lung,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 65294588 FALSE 65172335 FALSE PARTIALLY In-frame TRUE Lung LUNG no_match 65535382 FALSE 65404864 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22206 SCYL1::FRMD8 ENSG00000142186.18::ENSG00000126391.14 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3772 TRUE 1429 SCYL1 ENSG00000142186.18 protein_coding + + chr11:65525077-65538704:+ chr11:65532805:+ chr11:65292548-65306175:+ chr11:65300276:+ FRMD8 ENSG00000126391.14 protein_coding + + chr11:65386621-65413525:+ chr11:65394259:+ chr11:65154092-65180996:+ chr11:65161730:+ chr11:65536524 chr11:65391585 NA NA chr11:65303995 chr11:65159056 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Protein_kinase_domain(100%)|FERM_central_domain(100%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|FERM_M(100%) 1 0 0 626 369 ENST00000525364.5 ENST00000317568.10 downstream upstream none TTCTCATCCACTGACCGGGCCATGCGCATCCGCCTCCTGCAGCAG___ATGGAGCAGTTCATCCAGTACCTTGACGAGCCAACAGTCAACACCCAGATCTTCCCCCACGTCGTACATGGCTTCCTGGACACCAcCCCTGCCATCCGGGAGCAGACGGTCAAG|ATCCATGACGAGGAGGTCCTGCGGCTGCTC FSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTtPAIREQTVK|IHDEEVLRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE N-terminal kinase-like protein Other SCY1 Q96KG9 FALSE NA NA NA NA NA NA TRUE Breast,Lung,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 65294588 FALSE 65172335 FALSE PARTIALLY In-frame TRUE Lung LUNG no_match 65535382 FALSE 65404864 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22210 MIER3::ARPC1A ENSG00000155545.20::ENSG00000241685.10 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIER3 ENSG00000155545.20 protein_coding - - chr5:56919602-56971675:- chr5:56935428:- chr5:56215429-56267502:- chr5:56231255:- ARPC1A ENSG00000241685.10 protein_coding + - chr7:99325898-99366262:+ chr7:99330939:- chr7:98923521-98963885:+ chr7:98928562:- chr5:56935300 chr7:99338444 NA NA chr5:56231127 chr7:98936067 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none ELM2_domain(48%)| ELM2(3%)| 8 2 5 158 7 ENST00000381213.7 unknown upstream downstream duplicates(1) GATGGTGATAAGGAATCAGAGGTTGAAGATGTTGAAACAGACAGTGGTAATTCACCTGAAGATTTGAGGAAG___GAAATAATGATTGGTTTACAATATCAGGCAGAGATTCCCCCTTATCTTGGAGAGTACGATGGTAATGAGAAAG|GTACCCAAATCTAGATACACTTGAAGAAGCAACCATTAACTGAAATGGGAACATTTTTCAAAAAGCAGCCAGCCTTCCTCTACCCCCAACTTTATCATTTCCAGGAGGCACCCTCACAATAAACTCAAGTTTCAAC DGDKESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEK|gtqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22211 MIER3::ENSG00000284292 ENSG00000155545.20::ENSG00000284292.1 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIER3 ENSG00000155545.20 protein_coding - - chr5:56919602-56971675:- chr5:56935428:- chr5:56215429-56267502:- chr5:56231255:- ENSG00000284292 ENSG00000284292.1 protein_coding + - chr7:99325879-99394653:+ chr7:99330939:- chr7:98923502-98992276:+ chr7:98928562:- chr5:56935300 chr7:99338444 NA NA chr5:56231127 chr7:98936067 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none ELM2_domain(48%)| ELM2(3%)| 8 2 5 158 7 ENST00000381213.7 unknown upstream downstream duplicates(1) GATGGTGATAAGGAATCAGAGGTTGAAGATGTTGAAACAGACAGTGGTAATTCACCTGAAGATTTGAGGAAG___GAAATAATGATTGGTTTACAATATCAGGCAGAGATTCCCCCTTATCTTGGAGAGTACGATGGTAATGAGAAAG|GTACCCAAATCTAGATACACTTGAAGAAGCAACCATTAACTGAAATGGGAACATTTTTCAAAAAGCAGCCAGCCTTCCTCTACCCCCAACTTTATCATTTCCAGGAGGCACCCTCACAATAAACTCAAGTTTCAAC DGDKESEVEDVETDSGNSPEDLRKEIMIGLQYQAEIPPYLGEYDGNEK|gtqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22212 SP2-AS1::CDK5RAP3 ENSG00000234494.8::ENSG00000108465.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2056 TRUE 3774 TRUE 1430 SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47941336:- chr17:45974696-46018776:- chr17:46018702:- CDK5RAP3 ENSG00000108465.15 protein_coding + + chr17:47967810-47981781:+ chr17:47971362:+ chr17:46045176-46059147:+ chr17:46048728:+ chr17:47941049 chr17:47970933 NA NA chr17:46018415 chr17:46048299 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |CDK5_regulatory_subunit-associated_protein_3(100%) |DUF773(100%) 1 14 0 16 890 ENST00000585280.5 ENST00000536708.6 upstream upstream duplicates(1) AAGGAAATGCTGTCACCGCGGTTAACACGCACGTGGAGGTTGGTTAAAG|GACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCG___ATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGCCAGAGAGCGAAGAGATCGCCCAGCTGCTGTCTGGGTCCT___ACATTCACTACTTTCACTGCCTAAGAATCCTGGACCTTCTCAAAGGCACAGAGGCCTCCACGAAGAATATTTTTGGCCGATACTCTTCACAGCGGATGAAG___GATTGGCAGGAGATTATAGCTCTGTATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22213 SP2-AS1::CDK5RAP3 ENSG00000234494.8::ENSG00000108465.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3774 TRUE 1430 SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47941347:- chr17:45974696-46018776:- chr17:46018713:- CDK5RAP3 ENSG00000108465.15 protein_coding + + chr17:47967810-47981781:+ chr17:47971362:+ chr17:46045176-46059147:+ chr17:46048728:+ chr17:47941049 chr17:47970933 NA NA chr17:46018415 chr17:46048299 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |CDK5_regulatory_subunit-associated_protein_3(100%) |DUF773(100%) 0 6 0 7 890 ENST00000451140.6 ENST00000536708.6 upstream upstream none CCTTTGGGGGCGGGAGCAGAGAGACAAGGAAATGCTGTCACCGCGGTTAACACGCACGTGGAG|GACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCG___ATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22214 SNRNP40::TOP1MT ENSG00000060688.13::ENSG00000184428.13 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNRNP40 ENSG00000060688.13 protein_coding - - chr1:31259568-31296788:- chr1:31289254:- chr1:31732415-31769635:- chr1:31762101:- TOP1MT ENSG00000184428.13 protein_coding - + chr8:143304384-143359979:- chr8:143337867:+ chr8:144386554-144442149:- chr8:144420037:+ chr1:31281538 chr8:143337801 NA NA chr1:31754385 chr8:144419971 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(42%)| WD40(7%)| 1 10 3 534 34 ENST00000263694.9 unknown upstream upstream mismatches(1) CTTCCTTTGTGAATTCCTGTTATCCAGCCAGGAGAGGCCCTCAGCTTGTCTGCACTGGCAGTGACGATGGCACAGTTAAG|ATTCCAGACTTCTTATGAGGAAGCATTGCGTAACTCCCTGTTTGGTTCTGTTCTGATCACCGGTGCATGCGGCCCCAGTTACGTAGCCCCCACTTGCACAATGTATCACGGCCCTTTCACATGGACCCCTTAGAGTTGTAAGCCCTTAAAAGGGACAGGAATCTGGACCTCGGGGAGCCCGGATCTTGAGAGGCGATTCTACTGATGCTCCC SFVNSCYPARRGPQLVCTGSDDGTVK|ipdfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22215 SP2-AS1::ENSG00000263798 ENSG00000234494.8::ENSG00000263798.2 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3775 TRUE 1431 SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47941336:- chr17:45974696-46018776:- chr17:46018702:- ENSG00000263798 ENSG00000263798.2 lncRNA + + chr17:47945424-47981736:+ chr17:47971362:+ chr17:46022790-46059102:+ chr17:46048728:+ chr17:47941049 chr17:47970933 NA NA chr17:46018415 chr17:46048299 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 12 0 16 890 ENST00000585280.5 ENST00000641877.1 upstream upstream duplicates(1) AAGGAAATGCTGTCACCGCGGTTAACACGCACGTGGAGGTTGGTTAAAG|GACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCG___ATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGCC...TGGcCCTTCTCAAAGGCACAGAGGCCTCCACGAAGAATATTTTTGGCCGATACTCTTCACAGCGGATGAAG___GATTGGCAGGAGATTATAGCTCTGTATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22216 SP2-AS1::ENSG00000263798 ENSG00000234494.8::ENSG00000263798.2 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3775 TRUE 1431 SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47941347:- chr17:45974696-46018776:- chr17:46018713:- ENSG00000263798 ENSG00000263798.2 lncRNA + + chr17:47945424-47981736:+ chr17:47971362:+ chr17:46022790-46059102:+ chr17:46048728:+ chr17:47941049 chr17:47970933 NA NA chr17:46018415 chr17:46048299 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 5 0 7 890 ENST00000451140.6 ENST00000641877.1 upstream upstream none CCTTTGGGGGCGGGAGCAGAGAGACAAGGAAATGCTGTCACCGCGGTTAACACGCACGTGGAG|GACCATCAGCACGTGCCCATCGACATCCAGACCAGCAAGCTGCTCG___ATTGGCTGGTGGACAGAAGGCACTGCAGCCTGAAATGGCAGAGTCTGGTGCTGACGATCCGCGAGAAGATCAATGCTGCCATCCAGGACATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22220 PCCA::SNX13 ENSG00000175198.17::ENSG00000071189.21 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCCA ENSG00000175198.17 protein_coding + + chr13:100089015-100530437:+ chr13:100273346:+ chr13:100741269-101182691:+ chr13:100925600:+ SNX13 ENSG00000071189.21 protein_coding - - chr7:17790761-17940501:- chr7:17834865:- chr7:17830385-17980124:- chr7:17874488:- chr13:100298133,chr13:100298127 chr7:17838091,chr7:17838092 NA NA chr13:100950387,chr13:100950381 chr7:17877714,chr7:17877715 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Biotin_carboxylase__N-terminal_domain(100%),Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(86%)|PX_domain(100%),Regulator_of_G_protein_signaling_domain(42%),Sorting_nexin_C_terminal(100%) ATP-grasp(100%),Biotin_carb_C(0%),Biotin_carb_N(100%),CPSase_L_D2(29%),Dala_Dala_lig_C(100%),PCC_BT(0%),RimK(29%)|Nexin_C(100%),PX(100%),RGS(6%) 3 1 2 38 186 ENST00000376286.8 ENST00000428135.7 downstream downstream none ATCAGAAGGTGGTGGAGGAAGCACCAAG___CATTTTTTTGGATGCGGAGACTCGAAGAGCGATGGGAGAACAAGCTGTAGCTCTTGCCAGAGCAGTAAAATATTCCTCTGCTGGGACCGTGGAGTTCCTTGTGGACTCTAAGAAGAATTTTTATTTCTTGGAAATGAATACAAGACTCCAG|GCATCTCCAAGAGTTACTGTTGATGACTATTTAGTAGCAAAATTAGCAGATACTTTGAATCATGAAGATCCAACCCCTGAAATCTTTGATGACATTCAAAGAAAG___GTATATGAATTGATGCTACGAGATGAAAGATTTTATCCTTCCTTCAGAC QKVVEEAPSIFLDAETRRAMGEQAVALARAVKYSSAGTVEFLVDSKKNFYFLEMNTRLQ|ASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKVYELMLRDERFYPSFR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22221 SUFU::C10orf95-AS1 ENSG00000107882.12::ENSG00000269609.6 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102550106:+ chr10:104263729-104393292:+ chr10:104309863:+ C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102455337:+ chr10:104209573-104220863:+ chr10:104215094:+ chr10:102556169,chr10:102556169 chr10:102450346,chr10:102450341 NA NA chr10:104315926,chr10:104315926 chr10:104210103,chr10:104210098 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Suppressor_of_fused_protein_(SUFU)(49%)| SUFU(48%)| 0 4 2 49 143 ENST00000369902.8 ENST00000473970.3 downstream upstream none TGGACCTAGTGGTTTTGGCTTTGAGTTGACCTTTCGTCTGAAGAGAGAAACTGGGGAGTCTGCCCCACCAACATGGCCCGCAGAGTTAATGCAGGGCTTGGCACGATACGTGTTCCAGTCAG|GAGTTCAGTGGCATGACCAGGGCTCACTGCAACCTTGATCTGGGCTCAAGTGATCCTCCTACCTCAGCTTCCTGAGTAGCTAGGACCACAGGTGTGCACCAACCACACCCGACTAATTTTTGTAGAGATGAGATCCCACTATGTTACCCAG GPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQS|gvqwhdqgslqp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 22222 ATP7B::ENSG00000230490 ENSG00000123191.17::ENSG00000230490.4 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP7B ENSG00000123191.17 protein_coding - - chr13:51930436-52012125:- chr13:51957516:- chr13:52504572-52586261:- chr13:52531652:- ENSG00000230490 ENSG00000230490.4 lncRNA - - chr13:33354863-33676820:- chr13:33439724:- chr13:33929000-34250957:- chr13:34013861:- chr13:51956353,chr13:51956357 chr13:33457874,chr13:33457875 NA NA chr13:52530489,chr13:52530493 chr13:34032011,chr13:34032012 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none E1-E2_ATPase(15%),Heavy-metal-associated_domain(100%)| E1-E2_ATPase(59%),HMA(100%)| 1 3 0 77 27 ENST00000674147.2 ENST00000686875.1 upstream downstream duplicates(1),mismatches(1) CCACCAGCAAAGCCCTTGTTAAGTTTGACCCGGAgATTATCGGTCCACGGGATATTATCAAAATTATTGAG___GAAATTGGCTTTCATGCTTCCCTGGCCCAG...CTCATGTCTCTCCAAGCCACAGAAGCCACCGTTGTGACCCTTGGTGAGGACAATTTAATCATCAG|GTGCTCTCTGATAACAGACCCAAAGAAAGAGTGG___AGAGTCTTTGAAGGAAGCTAGACCTGAACAAATTCTAA...AGCAGTTCTTCTAGAGGATGAGAGACATTGAAAAGATGAGATTATGACCAGAAAGCAGAAAGTAATCACAATACTTAGTAGGAACTTTGTTGGCAAAAGAG...AGAATGAAGCCGTGGACCCTCGCGGTGAGTGTTACAGCTCTTAAGGTGGCGTGTCGGGAGTCTGTCCCTTCTGATGTTCAGATGTGTTTGGAGTTTCTTCC...GCCTCAATGAAACTTGATGTGAACTTCCAAAGGAAAAAG___GGTGACGACTCCGATGAGGAAGATCTTTGTATCAGCAACAAATGGACTTTCCAAAGAACCAG LMSLQATEATVVTLGEDNLIIr|cslitdpkkewrvfegs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22226 CRPPA::LINC02981 ENSG00000214960.11::ENSG00000214870.11 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRPPA ENSG00000214960.11 protein_coding - - chr7:16087525-16502504:- chr7:16376092:- chr7:16127150-16542129:- chr7:16415717:- LINC02981 ENSG00000214870.11 lncRNA + + chr7:26398593-26497595:+ chr7:26493795:+ chr7:26438213-26537215:+ chr7:26533415:+ chr7:16344519,chr7:16344521 chr7:26468805,chr7:26468803 NA NA chr7:16384144,chr7:16384146 chr7:26508425,chr7:26508423 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none 2-C-methyl-D-erythritol_4-phosphate_cytidylyltransferase(70%)| Cys_knot(100%),DAN(100%),IspD(31%),NTP_transf_3(40%),Sclerostin(100%)| 0 1 1 16 2 ENST00000675257.1 ENST00000702901.1 upstream upstream none TGATGGTTGCTTAGACTACTCGCTAGAACGTGCCAGACACAGAGCAAGTGAAATGCCCCAAGCTTTTCTATTTGATGTGATTTATGAAGCATATCAGCAG|TACCAGAGATGTCTCCAAGAGCACCAGCAACCCCAGCTATCTGGATCTGAAGTGGATATGCTCAGAGACATCCTGGCCCACCCCAAAGAAGATGCTGCTGCACTCAGAAG...CGTGGCTTGGCAGCACTACAAGGCAGAGTGAAAACAGATACTTCTACCCACATTCCTATCTCCTCTCATTTACGCAGATTAAATGCTTTCTTTCCTTGTTT DGCLDYSLERARHRASEMPQAFLFDVIYEAYQQ|yqrclqehqqpqlsgsevdmlrdilahpkedaaalr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22228 PLCXD2::PHLDB2 ENSG00000240891.8::ENSG00000144824.21 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3777 TRUE 1432 PLCXD2 ENSG00000240891.8 protein_coding + + chr3:111674676-111846447:+ chr3:111675408:+ chr3:111393523-111565294:+ chr3:111394255:+ PHLDB2 ENSG00000144824.21 protein_coding + + chr3:111732497-111976517:+ chr3:111884064:+ chr3:111451344-111695364:+ chr3:111602911:+ chr3:111699371,chr3:111699368 chr3:111876760,chr3:111876754 NA NA chr3:111418218,chr3:111418215 chr3:111595607,chr3:111595601 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |PH_domain(100%) |PH(100%) 26 16 30 201 1321 ENST00000393934.7 ENST00000393923.7 downstream upstream duplicates(1),mismappers(3),mismatches(4) CGTCGCCCTGAAACGTCCACAGAGCCCAAGAAGTGATGATCACTGAGTGAGTGGCACTGGGCTGAGACTGGCCAGTTTGTTAACAACAGGGATGCTAGCAGTTAGGAAGGCCAGGAGGAAACTCAGGATGGGGACCATCTGCTCCCCCAACCCCAGCGGGACAAAGACATCATCGGAGGTCTGCAATGCCGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACCTCCCCCTTTCCAATCTGGCAATCCCAG|ATTCCAGCAAGATTATGGAAGAGCATAGCTACATACAAAAGGAGCTAGATTTACAAAATGGTAGCTTAGAGGAAGACTCTGTGGTGCATTCTGTTGAGAACGATTCCCAAAACATGATGGAGAGCCTCAGCCCAAAGAAATACTCTTCCAGTCTGAGATTTAAAGCCAATGGAGACTATTCTGGCTCCTATTTAACCCTCTCACAACCTGTGCCTGCAAAGAGAAGCCCTTCTCCTTTGGGAACCAGTGTCAGAAGCAGCCCCTCCTTAGCCA MLAVRKARRKLRMGTICSPNPSGTKTSSEVCNADWMASLPPHLHNLPLSNLAIP|dSSKIMEEHSYIQKELDLQNGSLEEDSVVHSVENDSQNMMESLSPKKYSSSLRFKANGDYSGSYLTLSQPVPAKRSPSPLGTSVRSSPSLA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22229 PLCXD2::PHLDB2 ENSG00000240891.8::ENSG00000144824.21 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3777 TRUE 1432 PLCXD2 ENSG00000240891.8 protein_coding + + chr3:111674676-111846447:+ chr3:111675408:+ chr3:111393523-111565294:+ chr3:111394255:+ PHLDB2 ENSG00000144824.21 protein_coding + + chr3:111732497-111976517:+ chr3:111913319:+ chr3:111451344-111695364:+ chr3:111632166:+ chr3:111699371,chr3:111699368 chr3:111876760,chr3:111876754 NA NA chr3:111418218,chr3:111418215 chr3:111595607,chr3:111595601 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |PH_domain(100%) |PH(100%) 0 1 0 201 3051 ENST00000393934.7 ENST00000393923.7 downstream upstream none CTGCAATGCCGACTGGATGGCCTCGCTCCCCCCTCACCTCCACAACCTCCCCCTTTCCAATCTGGCAATCCCAG|GAGAGACAGCGTCTGGAGACCATCCTC...CTTGGCAAGCTGTGGGAGTCTCAGTCAGAGCAGTGCCAGCTTCTTTACCCCCAGGAGCACCAGGAATGATGAACTACTCAGTGACCTtACCCGGACTCCTC CNADWMASLPPHLHNLPLSNLAIP|getasgdhp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22231 UBE3C::DNAJB6 ENSG00000009335.19::ENSG00000105993.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3778 TRUE 1433 UBE3C ENSG00000009335.19 protein_coding + + chr7:157138926-157269370:+ chr7:157170450:+ chr7:156931620-157062064:+ chr7:156963144:+ DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157358547:+ chr7:157128075-157210133:+ chr7:157151241:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |DnaJ_domain(100%) IQ(100%)|DnaJ(100%),SRR(100%) 7 1 9 239 1112 ENST00000348165.10 ENST00000262177.9 downstream upstream duplicates(2),mismatches(2) GAAGAAAGG?????????AAAAA?GCAA?AATTATCCAGTCATTTATTCGAGGCTATAGAGACAGAAAACAGCAA___TATTCCATCCAAAGAAGTGCATTTGATCGCTGTGCTACCTTGTCACAGTCCGGGGGCGCTTTTCCCATTGCTAATGGCCCCAACCTTACCCTTTTGGTAAGGCAGCTTCTGTTTTTTTACAAACAAAATGAAGACTCAAAACGTTTG|GACCCATTCCAACAATCTCGTAAAACATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCACCCGAGGATATTAAAAAGGC___ATATCGGAAACTGGCACTGAAGTGGCATCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGAGAAAATTCAAG EER???K?A?IIQSFIRGYRDRKQQYSIQRSAFDRCATLSQSGGAFPIANGPNLTLLVRQLLFFYKQNEDSKRL|dpfqqsrktwwitmkf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22232 UBE3C::DNAJB6 ENSG00000009335.19::ENSG00000105993.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3778 TRUE 1433 UBE3C ENSG00000009335.19 protein_coding + + chr7:157138926-157269370:+ chr7:157163863:+ chr7:156931620-157062064:+ chr7:156956557:+ DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157358547:+ chr7:157128075-157210133:+ chr7:157151241:+ chr7:157167529 chr7:157338398 NA NA chr7:156960223 chr7:157131092 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through low none |DnaJ_domain(100%) |DnaJ(100%),SRR(100%) 0 1 3 144 1112 ENST00000348165.10 ENST00000262177.9 downstream upstream low_entropy(1) CCAGGATGTTCAGCTTCGAAGGCGACTTCAAGACGCGGCCCAAGGTGTCCCTTGGCGGCGCGAGCAGGAAG___GAGGAAAAGGCTTCTCTTTTACATCGTACTCAGGAAGAAAGAAGAAAGAGAGAG|GACCCATTCCAACAATCTCGTAAAACATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCACCCGAGGATATTAAAAAGGC___ATATCGGAAACTGGCACTGAAGTGGCATCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGAGAAAATTCAAG MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKRE|dpfqqsrktwwitmkf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22269 PPIE::PPIEL ENSG00000084072.17::ENSG00000291129.1 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762651:+ chr1:40157854-40229586:+ chr1:40228323:+ PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39522505:- chr1:39987952-40025370:- chr1:39988177:- chr1:39763413,chr1:39763416,chr1:39763417,chr1:39763478,chr1:39763402 chr1:39522814,chr1:39522805,chr1:39522782,chr1:39522647,chr1:39522825 NA NA chr1:40229085,chr1:40229088,chr1:40229089,chr1:40229150,chr1:40229074 chr1:39988486,chr1:39988477,chr1:39988454,chr1:39988319,chr1:39988497 NA NA sense sense stop-codon 3'UTR/splice-site exon/splice-site inversion low none Cyclophilin_type_peptidyl-prolyl_cis-trans_isomerase/CLD(90%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| Pro_isomerase(94%),RRM_1(100%),RRM_5(100%),TGF_beta(66%)| 1 0 0 165 17 ENST00000372830.5 ENST00000692918.1 downstream downstream none GGCCAACTCTGGCCCAAACACCAATGGCTCTCAGTTCTTCCTGACATGTGACAAGACAGACTGGCTGGATGGCAAGCATGTGGTGTTTGGAGAGGTCACCG...AGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAGAAGCTTCCTGCCTGCGGTGCtGCACAG|AAACAAGGAGAGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22273 CORO7::NMRAL1 ENSG00000262246.6::ENSG00000153406.14 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4416459:- chr16:4404543-4475706:- chr16:4466460:- NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4481879:- chr16:4511692-4545764:- chr16:4531880:- chr16:4413634,chr16:4413636 chr16:4485661,chr16:4485660 NA NA chr16:4463635,chr16:4463637 chr16:4535662,chr16:4535661 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Domain_of_unknown_function_(DUF1899)(14%)|NmrA-like_family(100%) DUF1899(1%)|NAD_binding_10(100%),NmrA(100%),TrkA_N(100%) 11 1 3 179 20 ENST00000571227.5 ENST00000572559.1 upstream downstream duplicates(1) GTTGCTCAGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG|ACTGCCACAGAGATAGTTCAAGGTGACAATGGCTCCTCTGCAGCAGCACATAGCAGTCTTGCCAGACACAACAGCAGATCAAGTAACTACTGAAGATGATGGCTACACTTGGAC MNRFRVSKFRHTEARPPRRE|tateivqgdngssaaahsslarhnsrssny* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22274 CORO7-PAM16::NMRAL1 ENSG00000103426.12::ENSG00000153406.14 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CORO7-PAM16 ENSG00000103426.12 protein_coding - - chr16:4340251-4420494:- chr16:4416459:- chr16:4390252-4470495:- chr16:4466460:- NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4481879:- chr16:4511692-4545764:- chr16:4531880:- chr16:4413634,chr16:4413636 chr16:4485661,chr16:4485660 NA NA chr16:4463635,chr16:4463637 chr16:4535662,chr16:4535661 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Domain_of_unknown_function_(DUF1899)(14%)|NmrA-like_family(100%) DUF1899(1%)|NAD_binding_10(100%),NmrA(100%),TrkA_N(100%) 10 1 3 179 20 ENST00000575334.5 ENST00000572559.1 upstream downstream duplicates(1) AGCGTGCACCTGAGACCCGACGCCCGGGGTCCTCGAAGACGCGTCCGCCGCCGTGCCCGTCGCCATGAACCGCTTCAGGGTGTCCAAGTTCCGGCACACCGAGGCTCGGCCGCCCCGCCGCGAG|ACTGCCACAGAGATAGTTCAAGGTGACAATGGCTCCTCTGCAGCAGCACATAGCAGTCTTGCCAGACACAACAGCAGATCAAGTAACTACTGAAGATGATGGCTACACTTGGAC MNRFRVSKFRHTEARPPRRE|tateivqgdngssaaahsslarhnsrssny* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22278 LAP3::QDPR ENSG00000002549.13::ENSG00000151552.13 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LAP3 ENSG00000002549.13 protein_coding + + chr4:17577198-17607972:+ chr4:17588977:+ chr4:17578821-17609595:+ chr4:17590600:+ QDPR ENSG00000151552.13 protein_coding - + chr4:17460261-17512206:- chr4:17499180:+ chr4:17461884-17513829:- chr4:17500803:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cytosol_aminopeptidase_family__N-terminal_domain(100%),Cytosol_aminopeptidase_family__catalytic_domain(29%)| Peptidase_M17(17%),Peptidase_M17_N(100%)| 2 1 3 436 21 ENST00000226299.9 unknown downstream upstream none GTGGATCCCTGTGGAGACGCTCAGGCTGCTGCGGAGGGAGCGGTGCTTGGTCTCTATGAATACGATGACCTAAAGCAAAAAAAGAAGATGGCTGTGTCGGC...AATGAGATGACGCCAACCAGATTTGCTGAAATTATTGAGAAGAATCTCAAAAGTGCTAGTAGTAAAACCGAGGTCCATATCAG___ACCCAAGTCTTGGATTGAGGAACAGGCAATGGGATCATTCCTCAGTGTGGCCAAAGGATCTGACGAGCCCCCAGTCTTCTTGGAAATTCACTACAAAGGCAGCCCCAATGCAAACGAACCACCCCTGGTGTTTGTTGGGAAAGGAATTACCTTTGACAG|ATGACAAAACGCAGACTCAGAAAGGCGAAGTAACTTGCCGAACGTGTCACAGTAAGTGGCAGAGCCTTAAGAGAAGTCCAACGTGCACAGTTCCAGAGCCTGCAGTCTTAA...GTCATTTAGAAAAATCAGTCTTTTGGTCCTAGGGTTTTGTTTTTTAAAATGTCAAGCTAAGACTCATTTCTCTGTTTACTTTCTACTGCCTCTGTTCCGTG NEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22281 SFMBT1::C5orf64 ENSG00000163935.14::ENSG00000178722.15 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SFMBT1 ENSG00000163935.14 protein_coding - - chr3:52903572-53046750:- chr3:53045816:- chr3:52937588-53080766:- chr3:53079832:- C5orf64 ENSG00000178722.15 lncRNA + + chr5:61610424-61793401:+ chr5:61755832:+ chr5:60906251-61089228:+ chr5:61051659:+ chr3:53024972 chr5:61754257 NA NA chr3:53058988 chr5:61050084 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 0 3 1 34 1 ENST00000394752.8 ENST00000667197.1 upstream upstream none GCGAAAAGACGGAAAGAAAGAAAGAAAACGAGCGCGAGAGGGGGAAAAGCGAGCGATCGAGCGAGCGCGCGCGCGAAAACTCCGGGCAG|TCAGTGTTCCTAATTGCACTGCCCCTGGAAAACGCACGGAGAAGAAATACAGCAAAATACATGAGATGGTGAAACACTCTGGCAACTGCAAGCGGACAGATGGGATCTGGGAG___GGCTTATCACAGCAGAAGAGATTGCCAATTTTGAAATGCATTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22285 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22063944:+ chr9:21994138-22128102:+ chr9:22063943:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 3 0 10 443 8 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(1),mismappers(3) GCCGTTTTGCCCCAAAACGAGAGAG___...CTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GTGATGGAGGCTTTTTATTTTGCCACAAAACCACTGGTGACGTTGCCTGTGGCCACCTTGGAGAAGACACTGGAGGTACACAGGATGTATCCCTGGAAGTGGCAGGGGGTATAAGTTTAGTAGGAGATTTGTTACTGAGTATTTAAGGTCTAGGAACAGATTGAGGGTGTTGGGTGGATTGCCCACTAAGACACTGGGTTTTCT WKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|vmeafyfatkplvtlpvatlektlevhrmypwkwqgv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22286 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21866842:+ chr9:21802635-21937650:+ chr9:21866841:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22063944:+ chr9:21994138-22128102:+ chr9:22063943:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense unknown 3'UTR exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 1 2 8 24 8 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(1),mismappers(3) TTCCAGTCATTTTGGGAATTCCTGCTTAACTTGAAAAAAATATGGGAAAGACATGCAGCTTTCATGCCCTTGCCTATCAAAGA___AAAAAATCTGCTGGAATGGCACTGAATTTTTAGGTCGATTTGGGAAGAATTGACAATATTGAACCTTTCAATCGATGGACATG|GTGATGGAGGCTTTTTATTTTGCCACAAAACCACTGGTGACGTTGCCTGTGGCCACCTTGGAGAAGACACTGGAGGTACACAGGA...AGGGGGTATAAGTTTAGTAGGAGATTTGTTACTGAGTATTTAAGGTCTAGG...___GCTTTGGTATCAGGATGATTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22287 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22087144:+ chr9:21994138-22128102:+ chr9:22087143:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 2 1 8 443 9 ENST00000644715.2 ENST00000651519.1 downstream upstream duplicates(1),mismappers(3) GATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATATGGAGAAGAGGTGCAACTTTGCTTATGAAATGGGAGGGCAAATATGGGAAACTTTAAGGTAAGTTTTCTTTCCCCTTGAAGGGGACCAAAAAGTTGTGGTTTATACTTTCTTGACTCTGGTCACTGTTGGGTGAAGAGTTGGTGCTATGGAAGCCATCTTCAG DYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|iwrrgatllmkwegkygkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22288 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22077679:+ chr9:21994138-22128102:+ chr9:22077678:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 3 0 8 443 12 ENST00000644715.2 ENST00000580467.5 downstream upstream duplicates(1),mismappers(3) AAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCGTCCTCCTTGCAAG___GCATGGAAGGCAGC...GATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAG...ATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCA...AGCA___GTTTCGGTGGACCGaGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GATGATTACGGAGCTAGGAATTTCCTACGAAGCTGGGTGATAAAAGGACATTGGACAAAAAC AVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|ddygarnflrswvikghwtk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22289 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21856223:+ chr9:21802635-21937650:+ chr9:21856222:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22077679:+ chr9:21994138-22128102:+ chr9:22077678:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense unknown exon/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(94%)| 1 0 6 24 12 ENST00000644715.2 ENST00000580467.5 downstream upstream duplicates(1),mismappers(3) CAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGT...CTGAGCACATTTAGG|GATGATTACGGAGCTAGGAATTTCCTACGAAGCTGGGTGATAAAAGGACATTGGACAAAAACACAGATAGCTTCATTCTATACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22290 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22063944:+ chr9:21994138-22128102:+ chr9:22063943:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 0 1 6 470 8 ENST00000644715.2 ENST00000651519.1 downstream upstream duplicates(1),mismappers(3) GGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GTGATGGAGGCTTTTTATTTTGCCACAAAACCACT...CCTGGAACCATCAGGAAATAATCCTTAGTTTTTTAAAGATGCTTTTAGTTGTGTTTTcTATTACAAGTACCTGAAAGCATCCTAACTAATCAATGCTAAAT GVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|vmeafyfatkp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22291 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 0 5 470 8 ENST00000644715.2 ENST00000580576.6 downstream upstream duplicates(1),mismappers(3) GGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCC...AAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GCTTTGGTATCAGGATGATTCTGGCCTCATAAAATGAGTTGGGGAGAATTCCCTCTTTTTCTATTGAATGGAATAGTTTCAGAAGGAATGGTACCAGCTCCTCTTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTTTTTTTGGTTG___GTACCAGAGATATAATAATGAGAAACAG SFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|alvsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22292 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22097258:+ chr9:21994138-22128102:+ chr9:22097257:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 4 443 21 ENST00000644715.2 ENST00000428597.6 downstream upstream none AGCA___GTTTCGGTGGACCGaGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGATTAAACTGGGGCCATTCATATGAGAGTTTAAGAACTCAG AVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|venfsrgsgrnlgmrstviklgpfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22293 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22096372:+ chr9:21994138-22128102:+ chr9:22096371:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 1 0 4 443 20 ENST00000644715.2 ENST00000428597.6 downstream upstream none AGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GTACCAGAGATATAATAATGAGAAACAGACATGCTCCCTCCCCTCATTG AVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|vpei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22294 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3787 TRUE 1434 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22096372:+ chr9:21994138-22128102:+ chr9:22096371:+ chr9:21878549,chr9:21878549,chr9:21878542 chr9:22063862,chr9:22063857,chr9:22063847 NA NA chr9:21878548,chr9:21878548,chr9:21878541 chr9:22063861,chr9:22063856,chr9:22063846 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 1 0 2 470 20 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(1) TACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGA...AAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GTACCAGAGATATAATAATGAGAAACAGACATGCTCCCTCCCCTCATTGAGGTTACAGCTTAGTGTGGAGACACACAGAT SFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|vpei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22298 ZHX3::GSS ENSG00000174306.22::ENSG00000100983.12 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3788 TRUE 1435 ZHX3 ENSG00000174306.22 protein_coding - - chr20:41178448-41317731:- chr20:41316862:- chr20:39807088-39946371:- chr20:39945502:- GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34946098:- chr20:33516235-33543830:- chr20:33533901:- chr20:41289125,chr20:41289130 chr20:34946255,chr20:34946257 NA NA chr20:39917765,chr20:39917770 chr20:33534058,chr20:33534060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Eukaryotic_glutathione_synthase(100%),Eukaryotic_glutathione_synthase__ATP_binding_domain(94%) |GSH_synth_ATP(73%),GSH_synthase(100%) 0 1 2 12 648 ENST00000558993.1 ENST00000643188.1 upstream downstream none GCCTGACCGTGTGAGAGTGCATGCCCGAGTGTGCGTTCCGCGTGTGCACCCGAGAGCCGCCTGCGTCCACGCCCGAGGGCCCTTGCACTCTGCTGGGATGT...CCATGCCCCCGGTGTAAAGAGCGTCAGCTCGACCAGTGAAGGCGGCAGAGCCAGGACTCGAACCACTCGGGGTACAGTAGCACCCTGAATCTTGGGACCCT...TCTGCCCACGCGAAAACACTACACGTGGGCCCCAGGTCCTCGGATTCCCTGAGTGGCGT|GTGGTGAGCTATGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGATGGACTTCAACCTGCTAGTGGATGCTGTCAGCCAGAACGCTGCCTTCCTGGAGCAAACTCTTTCCAG___CACCATCAAACAGGATGACTTTACCGCTCGTCTCTTTGACATCCACAAGCAAGTCCTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22299 ZHX3::GSS ENSG00000174306.22::ENSG00000100983.12 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3788 TRUE 1435 ZHX3 ENSG00000174306.22 protein_coding - - chr20:41178448-41317731:- chr20:41316953:- chr20:39807088-39946371:- chr20:39945593:- GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34946098:- chr20:33516235-33543830:- chr20:33533901:- chr20:41289125,chr20:41289130 chr20:34946255,chr20:34946257 NA NA chr20:39917765,chr20:39917770 chr20:33534058,chr20:33534060 NA NA sense sense unknown 5'UTR CDS/splice-site deletion medium none |Eukaryotic_glutathione_synthase(100%),Eukaryotic_glutathione_synthase__ATP_binding_domain(94%) |GSH_synth_ATP(73%),GSH_synthase(100%) 1 1 1 26 648 ENST00000558993.1 ENST00000643188.1 upstream downstream none GCCTGACCGTGTGAGAGTGCATGCCCGAGTGTGCGTTCCGCGTGTGCACCCGAGAGCCGCCTGCGTCCACGCCCGAGGGCCCTTGCACTCTGCTGGGATGTGGCAGCCCATGCCCCCGGTGTAAAGAGCGTCAGCTCGACCAGTGAAGGCGGCAGAGCCAGGACTCGAACCACTCGGG|GTGGTGAGCTATGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGATGGACTTCAACCTGCTAGTGGATGCTGTCAGCCAGAACGCTGCCTTCCTGGAGCAAACTCTTTCCAG___CACCATCAAACAGGATGACTTTACCGCTCGTCTCTTTGACATCCACAAGCAAGTCCTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22300 ZHX3::GSS ENSG00000174306.22::ENSG00000100983.12 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3788 TRUE 1435 ZHX3 ENSG00000174306.22 protein_coding - - chr20:41178448-41317731:- chr20:41317509:- chr20:39807088-39946371:- chr20:39946149:- GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34946098:- chr20:33516235-33543830:- chr20:33533901:- chr20:41289125,chr20:41289130 chr20:34946255,chr20:34946257 NA NA chr20:39917765,chr20:39917770 chr20:33534058,chr20:33534060 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |Eukaryotic_glutathione_synthase(100%),Eukaryotic_glutathione_synthase__ATP_binding_domain(94%) |GSH_synth_ATP(73%),GSH_synthase(100%) 0 1 0 8 648 ENST00000683867.1 ENST00000643188.1 upstream downstream none CGCAGCGCGGGAAGAGCGGCCCGGTCGCGGGCGCCGCCACCGCCGCCGCTGCCAG|GTGGTGAGCTATGCCCCATTCACGCTCTTCCCCTCACTGGTCCCCAGTGCCCTGCTGGAGCAAGCCTATGCTGTGCAGATGGACTTCAACCTGCTAGTGGATGCTGTCAGCCAGAACGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22319 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SKMEL24 SRR8616049 SRR8670682 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21827441,chr9:21827442 chr9:22109648,chr9:22109639 NA NA chr9:21827440,chr9:21827441 chr9:22109647,chr9:22109638 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 9 14 10 36 46 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(2),mismappers(1),mismatches(3) CTGATGCCTTAATTTTGGGGAAGATAAAAAATGTTGATTGCaTCCTCCTTGCAAG___GCATGGAAGGCAGCACACCATCATGCCTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|ATTGGCTTCTCTCACATGGCAAGAAACATTGCTGCTAGCACTTCCCGAGTTCTACGTTCTACAACATCCACCACTGGTGAGAGATTAACTTAT...GTTTTTCTGTTGAAgAGTCAAA...___GATCTTAACATAGACGTAAGATCAAATGCA...CATGTCAAACAATGTGTAACTCCAGTTATA DALILGKIKNVDCiLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|lasltwqetlllalpefyvlqhpplvrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22367 COQ2::LINC00616 ENSG00000173085.15::ENSG00000248307.6 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3796 TRUE 1436 COQ2 ENSG00000173085.15 protein_coding - - chr4:83261536-83284914:- chr4:83272087:- chr4:84182689-84206067:- chr4:84193240:- LINC00616 ENSG00000248307.6 lncRNA - - chr4:137978547-138131182:- chr4:138091039:- chr4:138899701-139052336:- chr4:139012193:- chr4:83270320,chr4:83270327 chr4:138094931,chr4:138094935 NA NA chr4:84191473,chr4:84191480 chr4:139016085,chr4:139016089 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none UbiA_prenyltransferase_family(48%)| UbiA(47%)| 20 8 10 362 28 ENST00000503391.5 ENST00000665179.1 upstream downstream duplicates(1),mismatches(1) CTGGCACTGGGTGTTCTTCTGTGTCTAAATTACTACAG___TATAGCTCTGGGAGCAGGATCCTTACTTCTTGTCATCACCTACCCACTAATGAAAAGAATTTCATACTGGCCTCAACTAGCCTTGG|GAATCTGCCCACCACTCAAGCCTGGGAAAGCTGGCAGAGGATGCACGTGTTTTACTCACCTGAGTGTTTACAATGCTCGTGAGGTGCCTCCCTGATA___TTTTTATAGCAGAATGGAGAAACACAACCAAGGAGATACACCTAAGTAACAACAGCAATGATGTCAAAAAGAGTGCCTGAATACTTAG LALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLAL|gicpplkpgkagrgctcfthlsvynarevpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22368 COQ2::LINC00616 ENSG00000173085.15::ENSG00000248307.6 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3796 TRUE 1436 COQ2 ENSG00000173085.15 protein_coding - - chr4:83261536-83284914:- chr4:83278948:- chr4:84182689-84206067:- chr4:84200101:- LINC00616 ENSG00000248307.6 lncRNA - - chr4:137978547-138131182:- chr4:138091039:- chr4:138899701-139052336:- chr4:139012193:- chr4:83270320,chr4:83270327 chr4:138094931,chr4:138094935 NA NA chr4:84191473,chr4:84191480 chr4:139016085,chr4:139016089 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none UbiA_prenyltransferase_family(20%)| UbiA(0%)| 3 3 1 200 28 ENST00000503391.5 ENST00000665179.1 upstream downstream none CAGCCCCCCGCCTGTCCCGAGCCGCGCGGGCGCCAGCTCAGTTTGTCCGCGGCGGCGGTGGTGGACTCTGCGCCCCGCCCCCTGCAGCCGTACTTGCGCCTCATGCGGTTGGACAAGCCCATTG___GAACCTGGCTTCTGTATTTACCATGTACCTGGAGCATTGGTTTGGCAGCTGAACCAGGTTGTTTTCCAGATTGGTACATGCTCTCCCTCTTTGGCACTGGAGCTATTCTGATGCGTGGAGCAGGCTGTACTATTAATGACATGTGGGACCAGGACTATGATAAAAAG|GAATCTGCCCACCACTCAAGCCTGGGAAAGCTGGCAGAGGATGCACGTGTTTTACTCACCTGAGTGTTTACAATGCTCGTGAGGTGCCTCCCTGATA___TTTTTATAGCAGAATGGAGAAACACAACCAAGGAGATACACCTAAGTAACAACAGCAATGATGTCAAAAAGAGTGCCTG...TCCTGGACATGCAAACCCAAGCTTCCTCTTTGCTGTGGCCAGGAATCTGCAGTGATTGAGAGCACAGACTGTATCTAAAATTCCACCTTTCAAAGTTCAGC QPPACPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKK|esahhsslgklaedarvllt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22369 FASTKD3::LINC01019 ENSG00000124279.12::ENSG00000248118.2 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3797 TRUE 1437 FASTKD3 ENSG00000124279.12 protein_coding - - chr5:7859159-7869037:- chr5:7862823:- chr5:7859272-7869150:- chr5:7862936:- LINC01019 ENSG00000248118.2 lncRNA - - chr5:3357264-3536094:- chr5:3531878:- chr5:3357378-3536208:- chr5:3531992:- chr5:7862260,chr5:7862263 chr5:3532808,chr5:3532808 NA NA chr5:7862373,chr5:7862376 chr5:3532922,chr5:3532922 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none FAST_kinase-like_protein__subdomain_1(100%),FAST_kinase-like_protein__subdomain_2(84%)| FAST_1(100%),FAST_2(72%)| 17 7 8 70 19 ENST00000264669.10 ENST00000505443.1 upstream downstream duplicates(2) AAGAATCTCATTTGGACACATTGAGTCGGGCACAACTGACCCAACTTTTCTTAGCCTCAGTCCTGGAATGCCCTTTCTATAAG___GGTCCAAAACTCCTTCCTAAATATCAAGTGAAGTCATTTCTTACCCCATGCTGTTCCCTGGAGACCCCTGTGGATTCTCAGCTTTATAGATATGTGAAGATTGGGCTGACTAACCTTTTAGGAGCAAGATTATATTTTGCTCCAAAAGTGTTGACACCCTATTGTTATACAATAG|CTGCTACACTGAAGGGAAAAACCTGAGGAAGCCCCTGACCTTCTTGAATAACCTGGATATTGCAGAATCATGCCTGGCACACGGCACTGGCAGAGACGCAGAAGGGAAAGTGTCCAGCGATGAGAG___ATACCGGCCAGGGGGCAAATCTTCAGCTTGCA ESHLDTLSRAQLTQLFLASVLECPFYKGPKLLPKYQVKSFLTPCCSLETPVDSQLYRYVKIGLTNLLGARLYFAPKVLTPYCYTI|aatlkgkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22370 FASTKD3::LINC01019 ENSG00000124279.12::ENSG00000248118.2 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3797 TRUE 1437 FASTKD3 ENSG00000124279.12 protein_coding - - chr5:7859159-7869037:- chr5:7865898:- chr5:7859272-7869150:- chr5:7866011:- LINC01019 ENSG00000248118.2 lncRNA - - chr5:3357264-3536094:- chr5:3531878:- chr5:3357378-3536208:- chr5:3531992:- chr5:7862260,chr5:7862263 chr5:3532808,chr5:3532808 NA NA chr5:7862373,chr5:7862376 chr5:3532922,chr5:3532922 NA NA sense sense unknown CDS/splice-site exon/splice-site deletion medium none FAST_kinase-like_protein__subdomain_1(100%),FAST_kinase-like_protein__subdomain_2(20%)| FAST_1(100%),FAST_2(1%)| 1 1 0 93 19 ENST00000513658.5 ENST00000505443.1 upstream downstream none CGGCAGAGCGCG___GTAAAGAATCTCATTTGGACACATTGAGTCGGGCACAACTGACCCAACTTTTCTTAGCCTCAGTCCTGGAATGCCCTTTCTATAAG|CTGCTACACTGAAGGGAAAAACCTGAGGAAGCCCCTGACCTTCTTGAATAACCTGGATATTGCAGAATCATGCCTGGCACACGGCACTGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22371 AHCY::ASIP ENSG00000101444.13::ENSG00000101440.10 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2060 FALSE NA FALSE NA AHCY ENSG00000101444.13 protein_coding - - chr20:34280268-34311802:- chr20:34303243:- chr20:32868074-32899608:- chr20:32891049:- ASIP ENSG00000101440.10 protein_coding + + chr20:34194569-34269344:+ chr20:34268991:+ chr20:32782375-32857150:+ chr20:32856797:+ chr20:34298716,chr20:34298724 chr20:34263423,chr20:34263415 NA NA chr20:32886522,chr20:32886530 chr20:32851229,chr20:32851221 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none S-adenosyl-L-homocysteine_hydrolase(2%)|Agouti_protein(61%) AdoHcyase(0%)|Agouti(100%) 9 10 2 1158 29 ENST00000217426.7 ENST00000568305.5 upstream upstream mismatches(3) CCGCCCAGTTCCTGTTCCCAGACTGAGGCCCAGCCCCCTTCGCCCGTTTCCATCACGAGTGCCGCCAGCATGTCTGACAAACTGCCCTACAAAGTCG|AAGGAGGCTTCGATGAAGAAAGTGGTGCGGCCCCGGACCCCCCTATCTGCGCCCTGCGTGGCCACCCGCAACAGCTGCAAGCCGCCGGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGT MSDKLPYKV|eggfdeesgaapdppicalrghpqqlqaagtrllrpvrllp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22372 HAUS6::PTPRD ENSG00000147874.11::ENSG00000153707.19 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3798 FALSE NA HAUS6 ENSG00000147874.11 protein_coding - - chr9:19053141-19102904:- chr9:19076602:- chr9:19053139-19102902:- chr9:19076600:- PTPRD ENSG00000153707.19 protein_coding - - chr9:8314246-10613002:- chr9:10024942:- chr9:8314246-10613002:- chr9:10024942:- chr9:19074832,chr9:19074836 chr9:10033083,chr9:10033084 NA NA chr9:19074830,chr9:19074834 chr9:10033083,chr9:10033084 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none HAUS_augmin-like_complex_subunit_6_N-terminus(100%)|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%),Protein-tyrosine_phosphatase(100%) HAUS6_N(100%)|I-set(100%),Ig_2(100%),Ig_3(100%),Y_phosphatase(100%),fn3(100%) 2 5 4 189 11 ENST00000380502.8 unknown upstream downstream mismappers(2),mismatches(1) GAACGTTGTCAGGCTGATCAAGCAAGATTGACGGTAGACCTTCACTACCTTGAAAAAGAGACCAAATTTCAGAAGGAAAGATTATCAGATCTGAAACATAT...AAAGCAAGGAGAATGGCATAAAAAGTGGAAAGAATTTCTTGGTTTGTCTCCTTTCAGTCTAATTAAAGGTTGGACTCCA___TCTGTAGATCTTTTACCACCAATGTCTCCCCTTTCGTTTGATCCTGCCTCAGAAGAAGTGTATGCAAAGAGTATTCTTTGTCAGTATCCTGCTTCACTTCCAG|GGACATGGATGAAGCTGGAAACCACCATTCTCAGCAAACTATCGCACGGACAGAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAtGAAGGGGAAC KQGEWHKKWKEFLGLSPFSLIKGWTPSVDLLPPMSPLSFDPASEEVYAKSILCQYPASLP|gtwmklettilsklshgqktkhrmfsliggn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, receptor type D 2 lung cancer, kidney cancer, HNSCC, glioblastoma epithelial, other TSG large_deletion, nonsense, missense 22376 ARHGAP32::BARX2 ENSG00000134909.19::ENSG00000043039.7 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP32 ENSG00000134909.19 protein_coding - - chr11:128965060-129279324:- chr11:129164319:- chr11:128834955-129149219:- chr11:129034214:- BARX2 ENSG00000043039.7 protein_coding + - chr11:129375848-129452279:+ chr11:129404915:- chr11:129245743-129322174:+ chr11:129274810:- chr11:129156639 chr11:129422418 NA NA chr11:129026534 chr11:129292313 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 2 0 8 8 ENST00000525234.1 unknown upstream downstream none GCCAGCGGGGCGCAGGGACGCCGCGGCGGCGCGGCGGGGCCGCGGGGCTCG___GAAGATGAAGTCCTCAGTACATTCTGAAGAAGATGATTTTGTTCCAGAGCTACATAGAAATGTACACCCTCGAGAGCGGCCTGATTGGGAAGAAACTCTTAGCGCAATG|AGGAAAAAGAGAGGAGAGTTCTGCCTATTAGGCACAGCAAGATCAAAGAGCCCCCTAAACAGGCTGAGAGAGTGCTCCATTCAAGTCTTCCATCTGAGAAAAGATCAAAACAAGACTGATGCCC...GAAATAACAGCAAGGCCCTCAGAAGAGAAAAGAATTTCCCACCAGGCTTATTAGCCAACATTACTCTCGCAGAACAG___GCTGAATAGAATATTCTCAACAAG MKSSVHSEEDDFVPELHRNVHPRERPDWEETLSAM|rkkrgefcllgtarsksplnrlrecsiqvfhlrkdqnktda NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22377 CDK5RAP2::MEGF9 ENSG00000136861.19::ENSG00000106780.9 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120518427:- chr9:123151153-123342448:- chr9:123280705:- MEGF9 ENSG00000106780.9 protein_coding - - chr9:120600811-120714470:- chr9:120622755:- chr9:123363089-123476748:- chr9:123385033:- chr9:120498952,chr9:120498959 chr9:120627697,chr9:120627701 NA NA chr9:123261230,chr9:123261237 chr9:123389975,chr9:123389979 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Centrosomin_N-terminal_motif_1(100%)|Laminin_EGF_domain(74%) Cnn_1N(100%)|Laminin_EGF(28%) 1 2 0 104 17 ENST00000349780.9 ENST00000373930.4 upstream downstream none CAGCAGGAGAGGGAGAGACTGGAGAAGGACCTGGAGGAAGCCCATCGAGAGAAGAGCAAAGGAGACTGCACCATCCGT|TTCTGGGAAATGCCAGTGCAAAGTGGGTGTCATTGGCTCTATATGTGACCGATGCCAAGATGGATATTATGGCTTTAGTAAGAATGGCTG QQERERLEKDLEEAHREKSKGDCTIR|fwempvqsgchwlym* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 123330599 FALSE 123367919 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22387 STK40::MRPS15 ENSG00000196182.11::ENSG00000116898.12 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STK40 ENSG00000196182.11 protein_coding - + chr1:36339624-36385924:- chr1:36373295:+ chr1:36805225-36851525:- chr1:36838896:+ MRPS15 ENSG00000116898.12 protein_coding - - chr1:36455718-36464384:- chr1:36457981:- chr1:36921319-36929985:- chr1:36923582:- chr1:36378750 chr1:36458426 NA NA chr1:36844351 chr1:36924027 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' medium none |Ribosomal_protein_S15(72%) |Ribosomal_S15(38%) 2 0 2 8 614 unknown ENST00000373116.6 downstream downstream none CGCAAATGCCAACTGGGATAGCAAGATGGATTTGGGGGTCATGGAGGTCCGGGCTCAAATTTCAACTTCTGACACTCACTTATTTTGTGACTCTACACTAGTCACCTACCCTTCAGGGGCCTCAGTTTCCTCATCTGTAAAACAGAGATGGTAATATGCCTTCACAGGACAGCTGAATGATGCTGTGGCTGGCGGgGTCACCAGGTCTTTGCTGGGTGAAGGGTGGGTGCTCCCTGCTCCGTGCTGAGGCCGCTTCCCTGTGGCAAGTCTCTGCAG|TTATTGCCTTGTCTGTCAAGATCCGCAGTTATGAAGAACACTTGGAGAAACATCGAAAG___GACAAAGCCCACAAACGCTATCTGCTAATGAGCATTGACCAGAGGAAAAAGATGCTCAAAAACCTCCGTAACACCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22388 NEK9::ZC2HC1C ENSG00000119638.14::ENSG00000119703.15 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEK9 ENSG00000119638.14 protein_coding - - chr14:75079353-75127344:- chr14:75106466:- chr14:75546056-75594047:- chr14:75573169:- ZC2HC1C ENSG00000119703.15 protein_coding + + chr14:75064109-75119502:+ chr14:75090587:+ chr14:75530812-75586205:+ chr14:75557290:+ chr14:75106094,chr14:75106105 chr14:75083393,chr14:75083382 NA NA chr14:75572797,chr14:75572808 chr14:75550096,chr14:75550085 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none Protein_kinase_domain(100%),Regulator_of_chromosome_condensation_(RCC1)_repeat(53%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_fungal(100%),RCC1(11%),RCC1_2(18%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),RCC1(100%),RCC1_2(100%) 1 2 0 71 28 ENST00000678037.1 unknown upstream upstream inconsistently_clipped(1) GACAAAGTTGCTGGCCCTGAAGTGCTAGAACCCATGCAGCTGAACTTCTTCCTCAGCAATCCAGTGGAGCAGGTCTCCTGTGGAGATAATCATGTGGTGGT...GGCGAATATGGTAGGGGTAGCCTTGTCTCTGTCCACTTCTTCACAG|GGTTTTGCTTTGTCACCCAGGCTGGATTGCAGTGGTACAATCATGGCACAGCTCGGCTCACTTCAGCCTCGACTTCCCAGGTTCAAGTGATCATCCTGCC GEYGRGSLVSVHFFT|gfcfvtqaglqwynhgtarltsastsqvqviil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase Nek9 Other NEK Q8TD19 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22398 ATP6V1H::RGS20 ENSG00000047249.18::ENSG00000147509.14 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1H ENSG00000047249.18 protein_coding - - chr8:53715543-53843558:- chr8:53756555:- chr8:54628103-54756118:- chr8:54669115:- RGS20 ENSG00000147509.14 protein_coding + - chr8:53851795-53959303:+ chr8:53906210:- chr8:54764355-54871863:+ chr8:54818770:- chr8:53755918,chr8:53755922 chr8:53906893,chr8:53906894 NA NA chr8:54668478,chr8:54668482 chr8:54819453,chr8:54819454 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none V-ATPase_subunit_H(91%)| V-ATPase_H_C(27%),V-ATPase_H_N(100%)| 5 6 33 686 29 ENST00000355221.7 unknown upstream downstream low_entropy(1),mismatches(5) GGAGTCCTGTGCACAAATCTGAGAAATTTTGGAGAGAGAATGCTGTGAGGTTAAATGAGAAGAATTATGAACTCTTGAA___AATCTTGACAAAACTTTTGGAAGTGTCAGATGATCCCCAAGTCTTAGCTGTTGCTGCTCACGATGTTGGAGAATATGTGCGGCATTATCCACGAGGCAAACG|TAGGGACGAGGTCGTGATCCGCCCGCCTCAGCCTCCCAAAATGCTGGGATTACAAGCATGAACCACCGCGCCTGGCCTGAG...___CCCCTCTGTTTCACCTCCTGTCTTCTCCATGGCCACACATGTTGC...___GGACGATCATCACCCTAGAGGTTGAACCCTTGGATACAACAGAAAAATGTAAAGGCCAATATCCAGGA SPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKr|rdevvirppqppkmlglqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22400 ZNF347::ZNF702P ENSG00000197937.13::ENSG00000242779.8 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3802 FALSE NA ZNF347 ENSG00000197937.13 protein_coding - - chr19:53124072-53159075:- chr19:53148681:- chr19:53627325-53662328:- chr19:53651934:- ZNF702P ENSG00000242779.8 transcribed_processed_pseudogene - - chr19:52966896-53037898:- chr19:52980972:- chr19:53470149-53541151:- chr19:53484225:- chr19:53142555,chr19:53142558 chr19:52982592,chr19:52982592 NA NA chr19:53645808,chr19:53645811 chr19:53485845,chr19:53485845 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none KRAB_box(100%)| KRAB(100%)| 1 1 7 42 34 ENST00000334197.12 ENST00000600425.5 upstream downstream mismatches(1) CAGGGATGTGGCTATAGAATTCTCTCAGGAGGAGTGGACATGCCTGGACCCCGCTCAGAGGACTTTGTACAGGGACGTGATGTTGGAGAATTATAGGAACCTGGCCTCCCTGG___...GGAATCTCTTGTTTTGACCTCAGTATTATCTCTATGTTGGAGCAAGGGAAGGAGCCTTTCACTTTGGAGAGCCAAGTACAAATAGCAGGAAACCCAGATGGATGGGAATGGATCAAAGCTGTGATCACAG|GATTGATTTCCAAAAACTCCTGTTACATGAGGAAGACACCAAGAAGAGCAAAGAAAAGGAGCCAGGGTGGCTCTTCCTCAG___TCAAATTAAAAGGAGAAGACCTCACTAAAGCCAGA...___CTATCTCTTCCAAATGCATGACAAGGAAGTTCTCATCAAGAAGGCAAGGCAATACAGAAGTGTTCCgCACAGGGACATTGCAAAGACAAGCAAGTCATCA GISCFDLSIISMLEQGKEPFTLESQVQIAGNPDGWEWIKAVIT|glisknscymrktprrakkrsqggsssvklkgedltka NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22401 UTRN::STXBP5-AS1 ENSG00000152818.20::ENSG00000233452.9 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3803 TRUE 1438 UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144782123:+ chr6:144606471-145174170:+ chr6:145103259:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146860743:- chr6:147145675-147525750:- chr6:147181879:- chr6:144787134,chr6:144787134,chr6:144787134 chr6:146927640,chr6:146927675,chr6:146927686 NA NA chr6:145108270,chr6:145108270,chr6:145108270 chr6:147248776,chr6:147248811,chr6:147248822 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Calponin_homology_(CH)_domain(100%),EF_hand(83%),Spectrin_repeat(100%),WW_domain(100%)| CH(100%),EF-hand_2(58%),Spectrin(100%),WW(100%)| 2 1 6 134 4 ENST00000367545.8 ENST00000660355.1 downstream downstream none ACATAATAAAGTGCCCTATTACATCAA___CCATCAAACACAGACCACCTGTTGGGACCATCCTAAAATGACCGAACTCTTTCAATCCCTTG___CTGACCTGAATA...GTACGTTTTTCTGCCTACCGTACAGCAATCAAAATCCGAAGACTACAAAAAGCACTATGTT___TGGATCTCTTAGAGTTGAGTACAACAAATGAAATTTTCAAACAGCACAAGTTGAACCAAAATGACCAGCTCCTCAGTGTTCCAGATGTCATCAACTGTCTGACAACAACTTATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTTCCACTCTGTGTTGATATGTGTCTCAATTGGTTGCTCAATGTCTATGACAC|GTGGTGACCAGATGGATATAAACGGGCTGTGGAAAAAGAGAATGCATGGCCAAAAATGGTGGTGCTCTCTGTCCAAAAACTGAGGCCCTATGACCATGAATGAAGCCAGAGGGCAGGTAGGAATAG___ATCATTTGCTCCAGAAGAAGCTGGTTGCCATGTCTTGAGGACAGTAAACCCTCTGGGGAGGTTCCTGTGGTAAGGAACAAGGGCTCCTGGC VRFSAYRTAIKIRRLQKALCLDLLELSTTNEIFKQHKLNQNDQLLSVPDVINCLTTTYDGLEQMHKDLVNVPLCVDMCLNWLLNVYDt|w* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22402 UTRN::STXBP5-AS1 ENSG00000152818.20::ENSG00000233452.9 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3803 TRUE 1438 UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144782123:+ chr6:144606471-145174170:+ chr6:145103259:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:144787134,chr6:144787134,chr6:144787134 chr6:146927640,chr6:146927675,chr6:146927686 NA NA chr6:145108270,chr6:145108270,chr6:145108270 chr6:147248776,chr6:147248811,chr6:147248822 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Calponin_homology_(CH)_domain(100%),EF_hand(83%),Spectrin_repeat(100%),WW_domain(100%)| CH(100%),EF-hand_2(58%),Spectrin(100%),WW(100%)| 4 1 3 134 12 ENST00000367545.8 ENST00000660355.1 downstream downstream none GTACGTTTTTCTGCCTACCGTACAGCAATCAAAATCCGAAGACTACAAAAAGCACTATGTT___TGGATCTCTTAGAGTTGAGTACAACAAATGAAATTTTCAAACAGCACAAGTTGAACCAAAATGACCAGCTCCTCAGTGTTCCAGATGTCATCAACTGTCTGACAACAACTTATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTTCCACTCTGTGTTGATATGTGTCTCAATTGGTTGCTCAATGTCTATGACAC|ATCATTTGCTCCAGAAGAAGCTGGTTGCCATGTCTTGAGGACAGTAAACCCTCTGGGGAGGTTCCTGTGGTAAGGAACAAGGGCTCCTGGCAATAGCCTCTGAGTGAGCCACCTTGAAAATGGATTGcCC...CTGCCAATGTCTTCACCACAACCTCATGAGATCCCAAGCTACAACCACTCAGTTAAGTTATGCCAAAATTCCTGATTCACAGAAATTGACATACAGGAGAGGTCACAGTTAAGATCTTGATGTTCT VRFSAYRTAIKIRRLQKALCLDLLELSTTNEIFKQHKLNQNDQLLSVPDVINCLTTTYDGLEQMHKDLVNVPLCVDMCLNWLLNVYDt|sfapeeagchvlrtvnplgrflw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22403 PPM1E::SKAP1 ENSG00000175175.6::ENSG00000141293.16 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3804 TRUE 1439 PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58972925:+ chr17:56833215-57062540:+ chr17:57050286:+ SKAP1 ENSG00000141293.16 protein_coding - - chr17:48133442-48430275:- chr17:48189500:- chr17:46210804-46507637:- chr17:46266862:- chr17:58982826 chr17:48248340 NA NA chr17:57060187 chr17:46325702 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Protein_phosphatase_2C(68%)|PH_domain(100%),SH3_domain(100%) PP2C(49%)|PH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 1 1 0 6 2 ENST00000308249.4 ENST00000336915.11 downstream downstream none TGAGGCCCTTGGAGGTTGCGTAGTCTGGTTTGGTGCCTGGAGGGTGAATGGAAGTCTGTCGGTTTCCAGAGCTATTG|GAATGGAAGACATCGTAAAAGGAGCTCAAGAACTTGATAACGTAATCAAGCAAGGATACTTGGAGAAGAAAAGCAAAGaTA...GTACGGATGGCCgCCCACCTGCGAAGAGATTCCAAGAAAGAATCCTGCTTTGAACTGACCTCCCAGGATAGGCGCAGCTATGAG___TTTACAGCTcCTAGTCC EALGGCVVWFGAWRVNGSLSVSRAI|gMEDIVKGAQELDNVIKQGYLEKKSKd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1203 chr17:48156427-48156511:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22404 PPM1E::SKAP1 ENSG00000175175.6::ENSG00000141293.16 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3804 TRUE 1439 PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58982825:+ chr17:56833215-57062540:+ chr17:57060186:+ SKAP1 ENSG00000141293.16 protein_coding - - chr17:48133442-48430275:- chr17:48248338:- chr17:46210804-46507637:- chr17:46325700:- chr17:58982826 chr17:48248340 NA NA chr17:57060187 chr17:46325702 NA NA sense sense unknown 3'UTR intron inversion medium none Protein_phosphatase_2C(100%)|PH_domain(100%),SH3_domain(100%) PP2C(100%)|PH(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 0 1 2 3 1 ENST00000308249.4 unknown downstream downstream mismappers(1),mismatches(1) AAAACAGCTTCACTTTAGCAATGATCAGATTGTTAATCTACAGATTTTATTTTTTAAAATTTGGATGTAAGTAGAGACTTTCAGTATTTGTTTTCTCTTGATTTTGAAGTCATTTCTTCTTCTCACGTCTGTGACAAATGGTTGAAAAGGAGTCAACATGGCCCCAACTATAGTGCCGGAACCTTTTCATCATTCTGAGGC|CGCCTCGGCTTCCCAAAGTCCTAGGATaAC...ACCTGTGCCCATCCTCCCCTATAGTTTTTCATACAGTACCGTATACAAAGAAAATAATAATTACTTGGTGAAGAATTGGCAAAAGTAAAAACTAAGAAGACTACCTGTTCCTGCGCAGGCCATCCTTGGAAGAATAAATGG___GAAATTCATGAAGAGAGATTCCAGGAAAGAAGTAGAACAGTGTTGCAAAATTAAAGTGTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1203 chr17:48156427-48156511:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22416 TRIM37::SKAP1 ENSG00000108395.14::ENSG00000141293.16 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:58999381:- chr17:57059999-57184282:- chr17:57076742:- SKAP1 ENSG00000141293.16 protein_coding - + chr17:48133442-48430275:- chr17:48257659:+ chr17:46210804-46507637:- chr17:46335021:+ chr17:58982829,chr17:58982831 chr17:48248359,chr17:48248357 NA NA chr17:57060190,chr17:57060192 chr17:46325721,chr17:46325719 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none B-box_zinc_finger(100%),MATH_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(100%)| MATH(100%),zf-B_box(100%),zf-C3HC4_3(100%),zf-RING_2(100%)| 0 1 1 206 1 ENST00000393066.7 unknown upstream upstream none CAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAAAATAGTGGAAG|ATGGGAGATTTAGTCCTGGTGCCTGAATTTGA...CTGTTCACCTGAATGACAaCCATAAATTAAGTCTCCCACAAAGTCCAAAATGTTCTTCTATTGCATTTAACAGAGAAGATACAAAATATAAAACTTTATTT SFPDGEQIGPEDLSFNTDENSGr|wei* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22426 HIPK3::KIAA1549L ENSG00000110422.12::ENSG00000110427.17 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HIPK3 ENSG00000110422.12 protein_coding + + chr11:33256672-33357023:+ chr11:33349287:+ chr11:33278218-33378569:+ chr11:33370833:+ KIAA1549L ENSG00000110427.17 protein_coding + + chr11:33376108-33674102:+ chr11:33598820:+ chr11:33397654-33695648:+ chr11:33620366:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Protein_kinase_domain(100%)|Domain_of_unknown_function_(DUF3827)(44%) Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|DUF3827(49%) 3 0 1 77 78 ENST00000303296.9 ENST00000658780.2 downstream upstream none GAAAGATGTCGAGGAAGTAAGTTGTATAGAAACACAGGACAATCAGAACTCAGAAGGAGAGGCAAGAAATTGCTGTGAAACATCTATCAGACAGGACTCTGATTCATCAGTTTCAGACAAACAGCGGCAAACCATCATTATTGCCGACTCCCCGAGTCCTGCAGTGAGTGTCATCACTATCAGCAGTGA...GTTCATTtAGTAGTCCTGATAGTACTCTGAGTACCAGCTCCTCAGGGCAGTCCAGCCCATCCCCCTGCAAGAGACCGAATAG|CAGGTCGCCCAGTGAGAATGGCTCTGTCATCAGCAACGAATCAGGGAAGCCCAGCTCAGGGAGACGCTCACCCCAGAATGTAATGGCACAGCAGAAAGTGACAAAGGAGGAGGCAAGGAAGAGAAATG___TGCCAG SfSSPDSTLSTSSSGQSSPSPCKRPNs|RSPSENGSVISNESGKPSSGRRSPQNVMAQQKVTKEEARKRNVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Homeodomain-interacting protein kinase 3 CMGC DYRK HIPK Q9H422 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22427 PHTF2::MAGI2 ENSG00000006576.17::ENSG00000187391.23 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHTF2 ENSG00000006576.17 protein_coding + + chr7:77798773-77957503:+ chr7:77840300:+ chr7:77428090-77586820:+ chr7:77469617:+ MAGI2 ENSG00000187391.23 protein_coding - + chr7:78017055-79453667:- chr7:78158328:+ chr7:77646372-79082983:- chr7:77787645:+ chr7:77886871 chr7:78103049 NA NA chr7:77516188 chr7:77732366 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' low none Homeodomain_containing_protein_PHTF1/2__N-terminal(6%)| Phtf-FEM1B_bdg(0%)| 1 0 2 210 2 ENST00000416283.6 unknown downstream upstream none CGGCGCTAGCTTCGGAGTCTCCCGCGCGCACCTCAGCCGCCTCCTAGCGGCGCGGCGCTCGCTCCTACG___CCTAAAATGACCAATGTGTGATTTCAGTGGAATAAATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAG|GCTGCTGAATGAGCTCTGGAAGACTGTGGTAGAAAAGGAAAAACAACCAAGGAAGCCTGAGAATCTGAAAAGGTGGCCAGTTGGAAGACAAATATGGGCTATGACTGTCACCTGTTGTATAGGATCATAGAACCTTAGAGCTGGAGGAGCTTCAGAAGTTGCG...ATCTACTTCTCCTCCCTCTACTtCTACCCAGGGGAtGGTtAAACTGCCTTTGCCAAATTGTAACCGAGGAAACTATGACAGTGGAAGAAATCAGACCTAAC MASKVTDAIVWYQKK|aae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22453 C1orf43::SCAMP3 ENSG00000143612.21::ENSG00000116521.11 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 2063 TRUE 3813 TRUE 1440 C1orf43 ENSG00000143612.21 protein_coding - - chr1:154206696-154220637:- chr1:154219836:- chr1:154179172-154193113:- chr1:154192312:- SCAMP3 ENSG00000116521.11 protein_coding - - chr1:155255979-155262430:- chr1:155256791:- chr1:155225770-155232221:- chr1:155226582:- chr1:154219562 chr1:155257340 NA NA chr1:154192038 chr1:155227131 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none NICE-3_protein(28%)|SCAMP_family(26%) NICE-3(9%)|SCAMP(10%) 131 95 300 3481 2215 ENST00000470180.2 ENST00000355379.3 upstream downstream duplicates(63),low_entropy(3),mismatches(108) TTTCAGGCCGGGTCTGGCTTGGTCTTCCCCCGTAAGGAAATGGCCGGGGAGCTCCAGGGGACCCAGGCGCCGTCGCTTCGGCGGAGCCTGGGCTGACCAGCCAGGACAGCGGGGTAAACCCGAACAATTCTGCGCGAGGTAGGGAGGCCATGGCGTCCGGCAGTAACTGGCTCTCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTG___GTGTTTGTACTGCTATTTATTTTTGTGAAGAGGCAAATCATGCGCTTTGCAATGAAATCTCGAAGGGGACCTCATGTCCCTGTGGGACACAATGCCCCCAAG|TGGCTGGATCTCTGCTCTGGTGGTGCCGAAGGGCAACACAGCAGTATCCGTGCTCATGCTGCTGGTCGCCCTGCTCTTCACTGGCATTGCTGTGCTAGGAATTGTCATGCTGAAACGG___ATCCACTCCTTATACCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGG MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPK|wldlcsggaegqhssirahaagrpalhwhccarnchaetdpllipphrcqlsegpariccwcllqpc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22454 C1orf43::SCAMP3 ENSG00000143612.21::ENSG00000116521.11 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3813 TRUE 1440 C1orf43 ENSG00000143612.21 protein_coding - - chr1:154206696-154220637:- chr1:154220342:- chr1:154179172-154193113:- chr1:154192818:- SCAMP3 ENSG00000116521.11 protein_coding - - chr1:155255979-155262430:- chr1:155256791:- chr1:155225770-155232221:- chr1:155226582:- chr1:154219562 chr1:155257340 NA NA chr1:154192038 chr1:155227131 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none NICE-3_protein(9%)|SCAMP_family(26%) NICE-3(0%)|SCAMP(10%) 0 1 201 5810 2215 ENST00000470180.2 ENST00000355379.3 upstream downstream duplicates(35),mismatches(43) CTCCTGCCTGTCCGCCATGTTTTCAGGCCGGGTCTGGCTTGGTCTTCCCCCGTAAGGAAATGGCCGGGGAGCTCCAGGGGACCCAGGCGCCGTCGCTTCGGCGGAGCCTGGGCTGACCAGCCAGGACAGCGGGGTAAACCCGAACAATTCTGCGCGAGGTAGGGAGGCCATGGCGTCCGGCAGTAACTGGCTCTCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTG|TGGCTGGATCTCTGCTCTGGTGGTGCCGAAGGGCAACACAGCAGTATCCGTGCTCATGCTGCTGGTCGCCCTGCTCTTCACTGGCATTGCTGTGCTAGGAATTGTCATGCTGAAACGG___ATCCACTCCTTATACCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAA MASGSNWLSGVNVVLVMAYGSL|wldlcsggaegqhssirahaagrpalhwhccarnchaetdpllipphrcqlsegpar NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22455 C1orf43::SCAMP3 ENSG00000143612.21::ENSG00000116521.11 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA TRUE 3813 TRUE 1440 C1orf43 ENSG00000143612.21 protein_coding - - chr1:154206696-154220637:- chr1:154219836:- chr1:154179172-154193113:- chr1:154192312:- SCAMP3 ENSG00000116521.11 protein_coding - - chr1:155255979-155262430:- chr1:155256419:- chr1:155225770-155232221:- chr1:155226210:- chr1:154219562 chr1:155257340 NA NA chr1:154192038 chr1:155227131 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none NICE-3_protein(28%)|SCAMP_family(4%) NICE-3(9%)|SCAMP(1%) 4 1 112 3481 1512 ENST00000470180.2 ENST00000355379.3 upstream downstream duplicates(14),mismatches(58) GGGAGGCCATGGCGTCCGGCAGTAACTGGCTCTCCGGGGTGAATGTCGTGCTGGTGATGGCCTACGGGAGCCTG___GTGTTTGTACTGCTATTTATTTTTGTGAAGAGGCAAATCATGCGCTTTGCAATGAAATCTCGAAGGGGACCTCATGTCCCTGTGGGACACAATGCCCCCAAG|ATCCACTCCTTATACCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGGTGCGAACCGCAGCTGCCAATGCAGCCGCTGGGGCTGCTGAAAATGCCTTCCGGGCCCCGTGACCCCTGACTGGGATGCCCTGGCCCTGCTACTTGAGGGAGCTGACTTAGCTCCCGTCCCTAAGGTCTCTGGGACTTGGAGAGACATCACTAACTGATGGCTCCTCCGTAGTGCTCCCAATCCTATGGCCATGACTGCTGAAC MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPK|IHSLYRRTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22456 IL6R::RIIAD1 ENSG00000160712.13::ENSG00000178796.13 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IL6R ENSG00000160712.13 protein_coding + + chr1:154405193-154469450:+ chr1:154454581:+ chr1:154377669-154441926:+ chr1:154427057:+ RIIAD1 ENSG00000178796.13 protein_coding + - chr1:151710433-151729805:+ chr1:151729394:- chr1:151682909-151702281:+ chr1:151701870:- chr1:154458739,chr1:154458737 chr1:151730011,chr1:151730013 NA NA chr1:154431215,chr1:154431213 chr1:151702487,chr1:151702489 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Immunoglobulin_domain(100%),Interleukin-6_receptor_alpha_chain__binding(100%)| IL6Ra-bind(100%),ig(100%)| 126 127 216 694 247 ENST00000368485.8 unknown downstream downstream duplicates(43),low_entropy(2),mismatches(22) CCATGCAG___GCACTTACTACTAATAAAGACGATGATAATATTCTCTTCAGAGATTCTGCAAATGCGACAAGCCTCCCAG___TGCAAGATTCTTCTTCAGTACCACTGCCCACATTCCTGGTTGCTGGAGGGAGCCTGGCCTTCGGAACGCTCCTCTGCATTGCCATTGTTCTGAG|GAATCATTCTGCCTGAAAAACGTGTGGTGGCCTTAATGGCACAGCCTGGCTTGAAGATGAGGCAGGAGTGGGAAAGTGCCCAATCCAAGAAGCAAGGAGGGAAACTGCTCACACCCCTTCCAGAAGCAATGGAACCGTCTCCCCTCTCACCACCAAGGTCACACAGGAAAGGCCACCAGCAGGAACATCATATTGATGCTAATGGCCCCCTCCCCATTTCCCTGTTGCCATCTTTACCCCTGAACTACTGTACTTCCACT MQALTTNKDDDNILFRDSANATSLPVQDSSSVPLPTFLVAGGSLAFGTLLCIAIVLr|nhsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22457 UBE2Q1::VPS72 ENSG00000160714.10::ENSG00000163159.15 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 2064 TRUE 3814 TRUE 1441 UBE2Q1 ENSG00000160714.10 protein_coding - - chr1:154548577-154559028:- chr1:154551397:- chr1:154521053-154531504:- chr1:154523873:- VPS72 ENSG00000163159.15 protein_coding - - chr1:151176304-151195321:- chr1:151185950:- chr1:151148780-151167797:- chr1:151158426:- chr1:154551198,chr1:154551209 chr1:151195180,chr1:151195188 NA NA chr1:154523674,chr1:154523685 chr1:151167656,chr1:151167664 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Ubiquitin-conjugating_enzyme(82%)|YL1_nuclear_protein(84%),YL1_nuclear_protein_C-terminal_domain(100%) UQ_con(61%)|YL1(65%),YL1_C(100%) 55 40 86 1192 791 ENST00000292211.5 ENST00000368892.9 upstream downstream duplicates(14),low_entropy(1),mismatches(5) CTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG___GTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAG___GGCTGGAGCAGTGCCTACTCCATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGGAAAGCACGAGTGCAGTTTGGAGCCAACAAA|GAATCCGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAGAGGACGAAGTGGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTCACCAAGGCCTATAAG___GAACCTCTCAAGAGCTTAAGGCCTCGAAAGGTCAACACCCCGGCTGGTAGCTCTCAGAAGGCGCGAGAAGAGAAGGCACTACTGCCATTAGAACT FDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANK|ESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22458 UBE2Q1::VPS72 ENSG00000160714.10::ENSG00000163159.15 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 2065 TRUE 3814 TRUE 1441 UBE2Q1 ENSG00000160714.10 protein_coding - - chr1:154548577-154559028:- chr1:154551771:- chr1:154521053-154531504:- chr1:154524247:- VPS72 ENSG00000163159.15 protein_coding - - chr1:151176304-151195321:- chr1:151185950:- chr1:151148780-151167797:- chr1:151158426:- chr1:154551198,chr1:154551209 chr1:151195180,chr1:151195188 NA NA chr1:154523674,chr1:154523685 chr1:151167656,chr1:151167664 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Ubiquitin-conjugating_enzyme(46%)|YL1_nuclear_protein(84%),YL1_nuclear_protein_C-terminal_domain(100%) UQ_con(29%)|YL1(65%),YL1_C(100%) 4 7 50 1255 791 ENST00000292211.5 ENST00000368892.9 upstream downstream duplicates(1),mismatches(4) GTTGACCAGGACAGCGCTTTGCACAACGATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATTCTACTTAACTTTTCCTTTAAA___GATAACTTTCCCTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG___GTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAG|GAATCCGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAGAGGACGAAGTGGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTCACCAAGGCCTATAAG___GAACCTCTCAAGAGCTTAAGGCCTCGAAAGGTCAACACCCCGGCTGGTAGCTCTCAGAAGGCGCGAGAAGAGAAGGCACTACTGCCATTAGAACT VDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQ|ESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22459 CTTN::TRIM37 ENSG00000085733.16::ENSG00000108395.14 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE TRUE 2066 FALSE NA FALSE NA CTTN ENSG00000085733.16 protein_coding + + chr11:70398404-70436584:+ chr11:70429199:+ chr11:70244510-70282690:+ chr11:70275305:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59032090:- chr17:57059999-57184282:- chr17:57109451:- chr11:70432498 chr17:59035563 NA NA chr11:70278604 chr17:57112924 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Repeat_in_HS1/Cortactin(100%)| HS1_rep(100%)| 21 30 29 10529 312 ENST00000346329.7 ENST00000393066.7 downstream downstream duplicates(10),inconsistently_clipped(1),low_entropy(10),mismatches(5) AGAAGGATCGGATGGATAAG___AATGCGTCAACCTTTGAGGATGTCACCCAGGTGTCCTCTGCCTACCAGAAGACAGTACCTGTCGAAGCTG___TGACCAGCAAAACAAGTAACATCAGAGCTAACTTTGAAAACCTCGCTAAGGAGAAAGAGCAGGAGGACAGGCGGAAGGCGGAGGCGGAGAGAGCCCAGCGGATGGCCAAGGAGCGGCAGGAGCAGGAAGAGGCCAGGAGGAAGCTGGAG|GTAGTAGCCATGGTTATGTGGGTTCCAGTAGTAGAATATCAAGAAGAACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATTAATTTTAATACATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGCCCACCTGCTTCACTTCTGCAGCCCACAG___CATCATATTCTCGAAAAGATAAAGACCAAAGGAAGCAACAGGCAATGTGGCGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACTCAAATGG KDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERAQRMAKERQEQEEARRKLE|vvamvmwvpvveyqeehiyapllpvvy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22461 POMK::NRG1 ENSG00000185900.11::ENSG00000157168.22 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POMK ENSG00000185900.11 protein_coding + + chr8:43093498-43131180:+ chr8:43103830:+ chr8:42948641-42986323:+ chr8:42958973:+ NRG1 ENSG00000157168.22 protein_coding + + chr8:31639222-32855666:+ chr8:32208304:+ chr8:31496738-32713184:+ chr8:32065820:+ chr8:43108913,chr8:43108908 chr8:32168514,chr8:32168506 NA NA chr8:42964056,chr8:42964051 chr8:32026030,chr8:32026022 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Protein_kinase_domain(10%)|EGF-like_domain(100%),Immunoglobulin_I-set_domain(100%),Neuregulin_intracellular_region(100%) PK_Tyr_Ser-Thr(0%)|EGF(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Neuregulin(100%),V-set(100%),hEGF(100%),ig(100%) 5 1 29 340 27 ENST00000676193.1 unknown downstream upstream duplicates(4),mismappers(1),mismatches(3) AGAGGCCGTCAACATGGAAAAGCAGCCCCAGAACAGCAGGAGAGGCCTCGCCCCCCGAGAGGTGCCGCCAGCTGTTGGGCTGCTGCTGATCATGGCCCTGATGAATACTCTGCTCTACCTCTGCCTCGACCACTTCTTCATCGCTCCTCGACAATCCACTGTGGACCCCACACACTGTCCCTATGGTCACTTCAGGATAGGACAGATGAAAAACTGCTCACCTTGGCTGTCCTGCGAGGAGCTGAGAACAGAAGTGAGACAGCTGAAGCGTGTTGGGGAAGGAGCTGTAAAGAGA|ACGGAGGTTTGCTCTTGTTGTCCAGGCTGGAGTGAAATGGCGTGATCTCGGCTCACTGCATCCTCTGCCTCAGCCTCCCGAGTAGCTGGAATTACAGGCACCCTCCACCATGCCCAGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTAAACTCCTAACCTCAGGTGATCCGCCCACGTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCACCGG MEKQPQNSRRGLAPREVPPAVGLLLIMALMNTLLYLCLDHFFIAPRQSTVDPTHCPYGHFRIGQMKNCSPWLSCEELRTEVRQLKRVGEGAVKR|tevcsccpgwsema* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Protein kinase-like protein SgK196 Other Other-Unique Q9H5K3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neuregulin 1 1 NSCLC epithelial TSG, fusion translocation 22466 DIXDC1::BCO2 ENSG00000150764.14::ENSG00000197580.13 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE TRUE 2067 FALSE NA FALSE NA DIXDC1 ENSG00000150764.14 protein_coding + + chr11:111927144-112022653:+ chr11:111937559:+ chr11:111797868-111893377:+ chr11:111808283:+ BCO2 ENSG00000197580.13 protein_coding + + chr11:112175510-112224699:+ chr11:112193474:+ chr11:112046233-112095422:+ chr11:112064197:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Retinal_pigment_epithelial_membrane_protein(92%) |RPE65(71%) 5 5 2 41 12 ENST00000440460.7 ENST00000460924.6 downstream upstream duplicates(2),mismatches(1) GGCCGTGCGGCTTTCCCGCAGGAAAGCGGGGCTGGGGGCAGCCCGGCAGCGCCGCTCAACCTAGTGCGCGCCCAGTTGTTTCCATAGGAACCGCGACCGCG...GCATGCGGGACTCCGGAGGGATCCCAATGAGCTGAGCCGAGAGCCTTTGTGTGCAGAGGGAGGAGGAGGAGGCGGCGGCGGCCGCCGGGCTGGAGACCCCGCCCGGGGAGCCCCCAGCAGGAACAATGCTAGCCTGCCTGACCCGAGGGAACTTACTGGACGTCCTGCAGGAGGGCTTCAATGAG|GTACAATCATTGGTTTGATGGGATGGCGCTGCTTCACCAGTTCAGAATGGCAAAGGGCACAGTGACATACAGGAGCAAGTTTCTACAGAGTGATACATATAAGGCCAACAGTGCTAAAAACCGAATTGTGATCTCAGAATTTGGCACACTGGCTCTCCCGGATCCATGCAAGAATGTTTTTGAACGTTTCATGTCCAGGTTTGAGCTGCCTGGTAAAGCTGCAGGTGATAGTGAcGATTATTTAAACTATTACGATATATAACCA MLACLTRGNLLDVLQEGFNE|vqslv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22467 ERC1::LINC00598 ENSG00000082805.21::ENSG00000215483.12 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1263165:+ chr12:1099675-1605099:+ chr12:1372331:+ LINC00598 ENSG00000215483.12 lncRNA - + chr13:40079106-40535807:- chr13:40413882:+ chr13:40653243-41109944:- chr13:40988019:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RIM-binding_protein_of_the_cytomatrix_active_zone(86%)| Cast(61%)| 3 4 5 354 9 ENST00000543086.7 unknown downstream upstream duplicates(1) GAATAAGAAGGTAGCAAATCTGAAGCACAAGGAACAGGTGGAAAAAAAGAAGAGTGCACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCAACGACAGCTCTCAGCAGCTACAG___GACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAGCTGGAAGAAGCACTAAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTAGCACAAGAGGAATCAGCCAGGACCAATGCTGAAAAACAG|GTTCCCTCATGCATTTTTGCCATGTGGCGGTGGTGTTGAAGAAGAAGAAAAAGAAGGAGGAGGAGAAAGAGGAAGAACTTTCCAGTTTCCCGTATCTGGATTTTGCTAACCTCGTCCCATGGTCTTTTACCACGTTCCTCTGTTTCTT NKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQ|vpscifamwrwc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 22468 DIXDC1::ENSG00000255292 ENSG00000150764.14::ENSG00000255292.9 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DIXDC1 ENSG00000150764.14 protein_coding + + chr11:111927144-112022653:+ chr11:111937559:+ chr11:111797868-111893377:+ chr11:111808283:+ ENSG00000255292 ENSG00000255292.9 protein_coding + + chr11:112086903-112193805:+ chr11:112193474:+ chr11:111957627-112064528:+ chr11:112064197:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site deletion/read-through high none none |RPE65(63%) 5 5 2 41 12 ENST00000440460.7 ENST00000525987.5 downstream upstream duplicates(2),mismatches(1) GGCCGTGCGGCTTTCCCGCAGGAAAGCGGGGCTGGGGGCAGCCCGGCAGCGCCGCTCAACCTAGTGCGCGCCCAGTTGTTTCCATAGGAACCGCGACCGCG...GCATGCGGGACTCCGGAGGGATCCCAATGAGCTGAGCCGAGAGCCTTTGTGTGCAGAGGGAGGAGGAGGAGGCGGCGGCGGCCGCCGGGCTGGAGACCCCGCCCGGGGAGCCCCCAGCAGGAACAATGCTAGCCTGCCTGACCCGAGGGAACTTACTGGACGTCCTGCAGGAGGGCTTCAATGAG|GTACAATCATTGGTTTGATGGGATGGCGCTGCTTCACCAGTTCAGAATGGCAAAGGGCACAGTGACATACAGGAGCAAGTTTCTACAGAGTGATACATATAAGGCCAACAGTGCTAAAAACCGAATTGTGATCTCAGAATTTGGCACACTGGCTCTCCCGGATCCATGCAAGAATGTTTTTGAACGTTTCATGTCCAGGTTTGAGCTGCCTGGTAAAGCTGCAGGTGATAGTGAcGATTATTTAAACTATTACGATATATAACCA MLACLTRGNLLDVLQEGFNE|vqslv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22471 TUFT1::EFNA4-EFNA3 ENSG00000143367.17::ENSG00000251246.1 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUFT1 ENSG00000143367.17 protein_coding + + chr1:151540305-151583583:+ chr1:151569770:+ chr1:151512781-151556059:+ chr1:151542246:+ EFNA4-EFNA3 ENSG00000251246.1 protein_coding + + chr1:155063748-155086807:+ chr1:155085091:+ chr1:155036224-155059283:+ chr1:155057567:+ chr1:151570577,chr1:151570578,chr1:151570576 chr1:155083770,chr1:155083768,chr1:155083766 NA NA chr1:151543053,chr1:151543054,chr1:151543052 chr1:155056246,chr1:155056244,chr1:155056242 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Ephrin(91%) |Ephrin(4%) 3 1 2 56 18 ENST00000368848.6 ENST00000505139.1 downstream upstream none TGGAGACAAGATGATTCACGAGAAGAATATTAACCAGCTGAAGAGTGAGGTCCAGTACATCCAGGAG___GCCAGGAACTGCCTACAGAAGCTCCGGGAGGATATAAGTAGCAAGCTTGACAGGAACCTAGGAGATTCTCTCCATCGACAGGAGATACAG___GTGGTGCTAGAAAAGCCAAATGGCTTTAGTCAGAGTCCCACAGCCCTGTACAGCAGCCCACCTGAG___GTGGACACC...GAGGCCAAGCGGCAACACCAGTCAGACTGTGTGGCTTTTGAG|CCTGCGGCGAGAGGGCTACACCGTGCAGGTGAACGTGAACGACTATCTGGATATTTACTGCCCGCACTACAACAGCTCGGGGGTGGGCCCCGGGGCGGGACCGGGGCCCGGAGGCGGGGCAGAG...CGCTGGGAGTGCAgCCcGCCGCcCGCCCCGCACAGCCCCATCAAGTTCTCGGAGAAGTTCCAGCGCTACAGCGCCTTCTCTCTGGGCTACGAGTTCCACGC EAKRQHQSDCVAFE|paarglhragererlsgyllpalqqlgggprggtgarrrgr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-554 chr1:151545796-151545891:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22472 TUFT1::EFNA3 ENSG00000143367.17::ENSG00000143590.14 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUFT1 ENSG00000143367.17 protein_coding + + chr1:151540305-151583583:+ chr1:151569770:+ chr1:151512781-151556059:+ chr1:151542246:+ EFNA3 ENSG00000143590.14 protein_coding + + chr1:155078837-155087538:+ chr1:155085091:+ chr1:155051313-155060014:+ chr1:155057567:+ chr1:151570577,chr1:151570578,chr1:151570576 chr1:155083770,chr1:155083768,chr1:155083766 NA NA chr1:151543053,chr1:151543054,chr1:151543052 chr1:155056246,chr1:155056244,chr1:155056242 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Ephrin(90%) |Ephrin(4%) 3 1 2 56 18 ENST00000368848.6 ENST00000368408.4 downstream upstream none TGGAGACAAGATGATTCACGAGAAGAATATTAACCAGCTGAAGAGTGAGGTCCAGTACATCCAGGAG___GCCAGGAACTGCCTACAGAAGCTCCGGGAGGATATAAGTAGCAAGCTTGACAGGAACCTAGGAGATTCTCTCCATCGACAGGAGATACAG___GTGGTGCTAGAAAAGCCAAATGGCTTTAGTCAGAGTCCCACAGCCCTGTACAGCAGCCCACCTGAG___GTGGACACC...GAGGCCAAGCGGCAACACCAGTCAGACTGTGTGGCTTTTGAG|CCTGCGGCGAGAGGGCTACACCGTGCAGGTGAACGTGAACGACTATCTGGATATTTACTGCCCGCACTACAACAGCTCGGGGGTGGGCCCCGGGGCGGGACCGGGGCCCGGAGGCGGGGCAGAG...CGCTGGGAGTGCAgCCcGCCGCcCGCCCCGCACAGCCCCATCAAGTTCTCGGAGAAGTTCCAGCGCTACAGCGCCTTCTCTCTGGGCTACGAGTTCCACGC EAKRQHQSDCVAFE|paarglhragererlsgyllpalqqlgggprggtgarrrgr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-554 chr1:151545796-151545891:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22475 PEX11A::SCAPER ENSG00000166821.9::ENSG00000140386.13 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PEX11A ENSG00000166821.9 protein_coding - - chr15:89677764-89690783:- chr15:89686431:- chr15:90220995-90234014:- chr15:90229662:- SCAPER ENSG00000140386.13 protein_coding - + chr15:76347904-76905444:- chr15:76381299:+ chr15:76640245-77197785:- chr15:76673640:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon inversion/5'-5' high none Peroxisomal_biogenesis_factor_11_(PEX11)(24%)| PEX11(58%)| 1 2 2 57 2 ENST00000561224.5 unknown upstream upstream mismatches(1) ATCCGACGGGCCCCAGAGGACCCACGCCTGAGCCCCGTGCGACTCGTGGCCTTTGGGCTAGAAGCCATGGACGCCTTCACCCGCTTCACCAACCAGACCCAGGGCCGGGACCGACTCTTCAG___AGC...CCCAAAGCTGGCAAAGAGAAGGTGGTAATGAAGCTCAAGAAACTGGAGTCCAGTGTGAGCACTGGTCGTAAAT|GAGAAGAATCTGACATCCTATCTACACTAAAATACTAACTCTTGATTGGTTAACATCGATATAAACCAATACTTGGTACCTGAAAAGCAGG...TTGGATGGTATTTTGAGTGTAATTCTCCTTGGGACTGGCAGTGCTGGGGTCCAAGATGGTGCCATGGAAGAGGACACAGTAGAGCATATGAAGAACTCCAGCCAGG PKAGKEKVVMKLKKLESSVSTGRK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22478 LINC01320::LTBP1 ENSG00000228262.11::ENSG00000049323.16 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 3816 TRUE 1442 LINC01320 ENSG00000228262.11 lncRNA + + chr2:33706886-34738231:+ chr2:33816938:+ chr2:33931953-34963298:+ chr2:34042005:+ LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33020909:+ chr2:33172020-33624576:+ chr2:33245976:+ NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site duplication high none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),TB_domain(100%) |EGF_CA(100%),TB(100%),cEGF(100%),hEGF(100%) 1 0 3 173 15 unknown ENST00000404816.7 downstream upstream duplicates(3),mismappers(2) GGATCACCTCAG___TAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTGCTGACCTCGTGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAG___GGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTCGTGTGAtCTTGGCTCACTTTGGCTTTGACTTCCTGGGCTCAAGTGATCCCTCCACTTCAGCCTTCCAAGTAACTGGGACTACAG|CTAGCTGTGTTCCGCCATGTCAGAATGGAGGGATGTGTCTCCGGCCACAACTCTGTGTGTGTAAACCAGGGACCAAGGGCAAAGCCTGTGAAACAATAGCTGCCCAGGACACCTCGTCACCAGTCTTTGGAGGGCAGAGTCCTGGGGCTGCTTCCTCGTGGGGCCCTCCTaAGCAAGCAGCAAAGCATACTTCATCTAAGAAGGCAGACACTCTACCAAGAGTCAGCCCTGTGGCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22479 LINC01320::LTBP1 ENSG00000228262.11::ENSG00000049323.16 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 3816 TRUE 1442 LINC01320 ENSG00000228262.11 lncRNA + + chr2:33706886-34738231:+ chr2:33706953:+ chr2:33931953-34963298:+ chr2:33932020:+ LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33243662:+ chr2:33172020-33624576:+ chr2:33468729:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Calcium-binding_EGF_domain(99%),Complement_Clr-like_EGF-like(100%),TB_domain(74%) |EGF_CA(93%),TB(48%),cEGF(100%),hEGF(100%) 0 2 0 1362 22 ENST00000366209.6 ENST00000404816.7 downstream upstream none GTAAGAAGTGCCTTTTGCCTCCCACCATTATTCTGAGGCCTCCTCAGCCATGTGGAACT|ATATTAATGAATGTCAGCTACAAGGTGTATGCCCTAATGGTGAGTGTTTGAATACCATGGGCAGCTATCGATGTACCTGCAAAATAGGATTTGGGCCGG...GCTCCTGAAGCTTCTACGTCTAGTGCCAGCCAAGTGATTGCTCCTACTCAAGTGACAG___AAATCAATGAATGTACTGTGAACCCTGATATCTGTGGAGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22480 LINC01320::LTBP1 ENSG00000228262.11::ENSG00000049323.16 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA TRUE 3816 TRUE 1442 LINC01320 ENSG00000228262.11 lncRNA + + chr2:33706886-34738231:+ chr2:33706953:+ chr2:33931953-34963298:+ chr2:33932020:+ LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33020909:+ chr2:33172020-33624576:+ chr2:33245976:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Calcium-binding_EGF_domain(100%),Complement_Clr-like_EGF-like(100%),TB_domain(100%) |EGF_CA(100%),TB(100%),cEGF(100%),hEGF(100%) 0 1 0 1362 15 ENST00000366209.6 ENST00000404816.7 downstream upstream none GTAAGAAGTGCCTTTTGCCTCCCACCATTATTCTGAGGCCTCCTCAGCCATGTGGAACT|CTAGCTGTGTTCCGCCATGTCAGAATGGAGGGATGTGTCTCC...GAAGGCAGACACTCTACCAAGAGTCAGCCCTGTGGCCCAGATGACCTTAACCCTCAAGCCGAAGCCTTCAGTGGGACTCCCCCAGCAGATACATTCTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22481 ARAP1::ALG1L9P ENSG00000186635.16::ENSG00000248671.9 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARAP1 ENSG00000186635.16 protein_coding - - chr11:72685069-72793599:- chr11:72721850:- chr11:72396114-72504644:- chr11:72432895:- ALG1L9P ENSG00000248671.9 lncRNA - + chr11:71673885-71813859:- chr11:71754418:+ chr11:71384931-71524905:- chr11:71465464:+ chr11:72715134,chr11:72715134 chr11:71754274,chr11:71754280 NA NA chr11:72426179,chr11:72426179 chr11:71465320,chr11:71465326 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none SAM_domain_(Sterile_alpha_motif)(100%)| SAM_1(100%),SAM_2(100%),START(100%)| 0 1 3 48 2 ENST00000334211.12 unknown upstream upstream mismatches(1) CACAAACACTTAAAGACATAAATCACAGGTGCAAAGCCATACCTGGGCTCAAAAACCTCCAAGAGAACGCAGCCTCAGACCCACCCAGGGGCCAGGGGCCAGGCTGTTTGCGAGACCAGCCCAGGCGGGACCCAGGCTTGCACGGGCAGGTACACGACATTCTTGGGCATACGCAGCCCGCCTGGCCGGAGCTGTGGGAGTCCTCAGCCCCAAGACCCAGCAGGCGTCTGAGG|GGAGATTCCAGAATAAATGAGGCACAGACCTAGTCTCAGGAAGCTTTTGCAAACTAATGGAGAAAACACATCTGCAGGCAATGACTTATGGTATAAGAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22482 PPFIA1::NADSYN1 ENSG00000131626.19::ENSG00000172890.13 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70272436:+ chr11:70116796-70231418:+ chr11:70118542:+ NADSYN1 ENSG00000172890.13 protein_coding + + chr11:71453109-71524107:+ chr11:71521090:+ chr11:71164155-71235153:+ chr11:71232136:+ chr11:70309439,chr11:70309428 chr11:71505577,chr11:71505563 NA NA chr11:70155545,chr11:70155534 chr11:71216623,chr11:71216609 NA NA sense sense stop-codon CDS/splice-site 3'UTR/splice-site deletion high none none none 2 1 1 684 21 ENST00000253925.12 ENST00000527963.1 downstream upstream mismatches(2),multimappers(1) CCGCGAGCCGCCGCGGAGCCTCCTCGCCCGCTCCCGCCGGCGAGCAAG___ATGATGTGCGAGGTGATGCCGACCATCAGCGAAGCAGAAGGCCCCCCTGGAGGAGGTGGAGGCCATGGTTCCGGCTCCCCTTCACAGCCAGATGCAGATTCACATTTTGAACAGTTGATGGTCTCCATGCTAGAAGAAA...GCCTTAACCtAGGGGAAGTTACACGAGGTTGGTCATGAAAGAGATTCCTTGCAGAGACAGCTCAACACGGCACTTCCACAG|GTGAATTACTTGGAAACTGCACAACACACCCGCTGTTTTCAACAGAGTTCAGTCACCTCTTGAGGGCTCTTCTGATTCTTATCTTGGTAGAGCATCTCCTCAAGGATTTCTGCAG___GGCTTCAAGATCCCACATCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin exact TRUE Skin Cutaneous Melanoma SKIN exact 70208594 FALSE 71208529 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22484 ARAP1::ENPP7P8 ENSG00000186635.16::ENSG00000255319.6 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARAP1 ENSG00000186635.16 protein_coding - - chr11:72685069-72793599:- chr11:72726620:- chr11:72396114-72504644:- chr11:72437665:- ENPP7P8 ENSG00000255319.6 transcribed_unprocessed_pseudogene + + chr11:71722052-71781183:+ chr11:71765544:+ chr11:71433098-71492229:+ chr11:71476590:+ chr11:72715134,chr11:72715134 chr11:71754274,chr11:71754280 NA NA chr11:72426179,chr11:72426179 chr11:71465320,chr11:71465326 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none SAM_domain_(Sterile_alpha_motif)(100%)| SAM_1(100%),SAM_2(100%),START(100%)| 2 1 0 253 12 ENST00000359373.9 ENST00000527856.5 upstream upstream none CCCGCCCCGGAGGAGCTGCCTTCCGCCCACCTGCTTCACCACCCCATCCACAGCTGCCCCAGACCCTGTGCTGCCCCCGCTGCCTGCTAAGCGGCATTTGGCAGAGCTGAGCGTTCCACCCGTGCCGCCCCGCACCGGACCCCCCCGCCTGCTGGTGAG|TAATGCTGCCAGAACCCATCAAGACACCCAGGAACTGATGTGCCTTGGCAGATGATGCTGGAAAGAT...CTATTCCAGGGGAGGTGCTAAATACGAGGGTGAGGCTGTCAAGCGGTGCCTGGTGGAGTCCTACACTCACCCAAACAGCAACGAGACAGAGCGGAGGGAGA PPRRSCLPPTCFTTPSTAAPDPVLPPLPAKRHLAELSVPPVPPRTGPPRLLVs|naarthqdtqelmclgr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22499 TANC2::TEX2 ENSG00000170921.16::ENSG00000136478.9 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63340332:+ chr17:61043596-61505064:+ chr17:61417693:+ TEX2 ENSG00000136478.9 protein_coding - + chr17:64147227-64263260:- chr17:64185571:+ chr17:62224587-62340620:- chr17:62262931:+ chr17:63348256,chr17:63348257 chr17:64174316,chr17:64174307 NA NA chr17:61425617,chr17:61425618 chr17:62251676,chr17:62251667 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none FLYWCH_u(100%)| 0 0 8 131 14 ENST00000689528.1 unknown downstream upstream duplicates(1),mismappers(6),mismatches(1) CAGAGTCAGTGTTTGTTGGCCGAGATTGGGTTTTCCACGAAATAGATGCTCAACTTCAAAGTTCAAATGCCAGCGTGAACCAAGGAGTAGTGATTGTGGGA...CACACAGCCACCTTCAGCCCACTCATCTATCACCAGTGGAAGCTGCCCAGGAACTCCGGAAATGCGCAGGCGGCAGGAGGAGGCTATGCGAAGACTAGCCTCGCAG___GTGGTTGCCTATCACTATTGTCAAGCAGATAATGCCTACACTTGCTTGGTGCCAGAATTTGTCCACAATGTTGCTGCCTTGCTCTGCCGCTCACCTCAGCTGACAGCCTATCGGGAGCAGCTTCTTCGGGAACCTCACCTGCAGAGCATGCTGAGCCTTCGTTCCTGTGTTCAAGACCCCATGGCCTCCTTCCGGAGGGGAGTTCTGGAGCCACTAGAAAATCTCCATAAAG|CACCACTGCACTCCAGTCTGGGCGACAGAGTGAGACTCCAACTAAAAAAAGAAAAAAAAAATTTCATCAGAGGCCAGGCACAGTGGCTCACGCTGTAATTCCACCACTTTGGGAGGCCGAGGAGAGTGGATCACCAGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATTGTGAAACTCCGTCTCTACTAAAAATACAAAATTAGCCGGACGTGGTAGCGTGTGACTGCAGTCCTGGCTACTCAGGAGGCTGAGGCAGAAGAATTGCTTGAACCTGG TQPPSAHSSITSGSCPGTPEMRRRQEEAMRRLASQVVAYHYCQADNAYTCLVPEFVHNVAALLCRSPQLTAYREQLLREPHLQSMLSLRSCVQDPMASFRRGVLEPLENLHK|aplhsslgdrvrlqlkkekknfirgqaqwltl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22502 ABR::YWHAE ENSG00000159842.16::ENSG00000108953.17 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ABR ENSG00000159842.16 protein_coding - - chr17:1003519-1229738:- chr17:1050050:- chr17:906759-1133032:- chr17:953290:- YWHAE ENSG00000108953.17 protein_coding - - chr17:1344275-1400222:- chr17:1345499:- chr17:1247569-1303516:- chr17:1248793:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Bcr-Abl_oncoprotein_oligomerisation_domain(100%),C2_domain(92%),PH_domain(100%),RhoGEF_domain(100%)|14-3-3_protein(4%) Bcr-Abl_Oligo(100%),C2(14%),PH(100%),PH_19(100%),RhoGEF(100%)|14-3-3(0%) 1 1 3 387 4756 ENST00000574139.7 ENST00000264335.13 upstream downstream mismatches(1) CCAAGTGGGATGAG___GAGTTTGAGATCGAGCTGGAGGGCTCCCAGTCCCTGAGGATCCTGTGCTATGAGAAGTGCTATGACAAGACCAAGGTCAACAAGGACAACAATGAGATCGTGGACAAGATCATGGGCAAAGGACAGATCCAG|GTGAAGAGCAGAATAAAGAAGCGCTGCAGGACGTGGAAGACGAAAATCAG...TGACCACCCCCTCCTCCCCATCCCACCCTTTGGAAACTCCCCATTGTCACTGAGAACCACCAAATCTGACTTTTACATTTGGTCTCAGAATTTAGGTTCCTGCCCTGTTGGTTTTTTTTTTTTTTTTT KWDEEFEIELEGSQSLRILCYEKCYDKTKVNKDNNEIVDKIMGKGQIQ|vksrikkrcrtwktki NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Active breakpoint cluster region-related protein Atypical BCR Q12979 FALSE NA NA NA NA NA NA TRUE Brain,Lung,Stomach,Large_intestine,Breast,Skin exact TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 982570|994905|982054 FALSE|FALSE|FALSE 1268352|1268352|1268352 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon) 1 endometrial stromal sarcoma mesenchymal TSG, fusion translocation 22508 SLC39A11::LINC00511 ENSG00000133195.12::ENSG00000227036.10 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72849634:- chr17:70642088-71088851:- chr17:70845773:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72404816:- chr17:70286232-70636611:- chr17:70400957:- chr17:72780490 chr17:72418595 NA NA chr17:70776629 chr17:70414736 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none ZIP_Zinc_transporter(57%)| Zip(54%)| 3 0 1 365 636 ENST00000255559.8 ENST00000701652.1 upstream downstream none TCCCTGTGGCTGTTGGCTTCACCCTTGGAGCGGCTTTTGTCTACTTGGCTGACCTCCTGATGCC...AGTGAGAATGGTGAGGCATATCAGAGAAAGAAGGCGGCAGCCACTGGCCTTCCAGAGGGTCCTGCTGTCCCTGTGCCTTCTCGAGGGAATCTGGCACAGCCCGGCGGCAGCAGCTGGAGGAGGATCGCACTGCTCATCTTGGCCATCACTATACACAACGTTCCAG|GATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGcCCCCTTGGAAGGACCTGGCTCAGGCTGGACCACCTCTTGAGAGGCAGGAG SENGEAYQRKKAAATGLPEGPAVPVPSRGNLAQPGGSSWRRIALLILAITIHNVP|gweglihiptrkfsrtpachlaplegpgsgwtts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22549 NSD2::NELFA ENSG00000109685.19::ENSG00000185049.16 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NSD2 ENSG00000109685.19 protein_coding + + chr4:1871393-1982207:+ chr4:1904378:+ chr4:1873120-1983934:+ chr4:1906105:+ NELFA ENSG00000185049.16 protein_coding - + chr4:1982717-2041903:- chr4:2039997:+ chr4:1984444-2043630:- chr4:2041724:+ chr4:1914878,chr4:1914874 chr4:2017875,chr4:2017868 NA NA chr4:1916605,chr4:1916601 chr4:2019602,chr4:2019595 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none PWWP_domain(16%)| PWWP(0%)| 84 51 37 673 367 ENST00000508803.6 unknown downstream upstream duplicates(13),low_entropy(5),mismappers(1),mismatches(9) GGCCTTGTCGAAGCAGCTCTTGTGTCTAAGATCTCAAGTCCTTCAGATAAAAAG___ATTCCAGCTAAGAAAGAGTCTTGTCCAAACACTGGAAGAGACAAAGACCACCTGTTGAAATACAACGTTGGTGATTTGGTGTGGTCCAAAGTGTCGGGTTACCCTTGGTGGCCTTGCATGGTTTCTGCAGATCCACTCCTTCACAGCTATACCAAACTTAAAG|GAAGGAAACAGAAACAACATCCAAAGGAACCAGCAAGTATGACAGAGAGAGAGAGACAGAGATGAAGACAGTCATGGGAATGAAGATGCATTTTTG___GGTCAGGACACCCGCGTCCGGCCGGGGCAGGGGCGGCT GLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLK|grkqkqhpkepasmtererqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Wolf-Hirschhorn syndrome candidate 1(MMSET) 1 MM leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 22550 PPP1CC::HAUS7 ENSG00000186298.12::ENSG00000213397.12 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2071 FALSE NA FALSE NA PPP1CC ENSG00000186298.12 protein_coding - - chr12:110719680-110742939:- chr12:110742653:- chr12:111157485-111180744:- chr12:111180458:- HAUS7 ENSG00000213397.12 protein_coding - - chrX:153447668-153495516:- chrX:153457228:- chrX:152713126-152760974:- chrX:152722686:- chr12:110728656 chrX:153462137 NA NA chr12:111166461 chrX:152727595 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Serine-threonine_protein_phosphatase_N-terminal_domain(20%)| STPPase_N(0%)| 23 76 44 495 370 ENST00000335007.10 ENST00000370211.10 upstream downstream duplicates(5),mismatches(4) GGAGGAAGTAGGGAGCGGGGTGGCAGGGGGGGGACCCGCCGCGGCTGCTGCCACCGCCGCCACCACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAG|GGCTGTGCCTGCGCCCAGAAGCAGCTACACTTCATGGACCAGTTGCTCGATACCATCCGGAGCCTGACCATTGGGTGCTCCAGTTGCTCGAG___CCTGATGGAGCACTTCGAGGACACCAGGGAGAAGAACGAGGCCTTGCTGGGGGAGCTCTTCTCTAGCCCCCACCTGCAGATGCTCCTGAATCCAGAGTGCGACC MADLDKLNIDSIIQRLLE|glclrpeaatlhgpvaryhpepdhwvlqllepdgalrghqgeerglaggall* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22551 PPP1CC::TREX2 ENSG00000186298.12::ENSG00000183479.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1CC ENSG00000186298.12 protein_coding - - chr12:110719680-110742939:- chr12:110742653:- chr12:111157485-111180744:- chr12:111180458:- TREX2 ENSG00000183479.13 protein_coding - - chrX:153444473-153470587:- chrX:153457228:- chrX:152709931-152736045:- chrX:152722686:- chr12:110728656 chrX:153462137 NA NA chr12:111166461 chrX:152727595 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Serine-threonine_protein_phosphatase_N-terminal_domain(20%)| STPPase_N(0%)| 23 74 41 495 370 ENST00000335007.10 ENST00000330912.7 upstream downstream duplicates(5),mismatches(4) GGAAGTAGGGAGCGGGGTGGCAGGGGGGGGACCCGCCGCGGCTGCTGCCACCGCCGCCACCACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAG|GGCTGTGCCTGCGCCCAGAAGCAGCTACACTTCATGGACCAGTTGCTCGATACCATCCGGAGCCTGACCATTGGGTGCTCCAGTTGCTCGAG___CCTGATGGAGCACTTCGAGGACACCAGGGAGAAGAACGAGGCCTTGCTGGGGGAGCTCTTCTCTAGCCCCCACCTGCAGATGCTCCTGAATCCAGAGTGCGACC MADLDKLNIDSIIQRLLE|glclrpeaatlhgpvaryhpepdhwvlqllepdgalrghqgeerglaggall* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22556 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2074 FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77971850:+ chr16:77822461-78014004:+ chr16:78005747:+ chr16:78219049,chr16:78219048 chr16:77951087,chr16:77951083 NA NA chr16:78252946,chr16:78252945 chr16:77984984,chr16:77984980 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%),short_chain_dehydrogenase(33%)|Zinc-binding_dehydrogenase(13%) KR(15%),WW(100%),adh_short(4%),adh_short_C2(15%)|ADH_zinc_N_2(0%) 15 10 12 68 30 ENST00000683929.1 ENST00000302536.3 downstream upstream none CCAACCACCCGGCAAAGATACGACGGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTGGCAAAGTGGTTGTGGTCACTGGAGCTAATTCAGGAATAG___GGTTCGAAACCGCCAAGTCTTTTGCCCTCCATGGTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG|GTGAAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGCAAGTTAATTCTGGATGTAGAAAAGACCCCAACTCCACTG___ATGGCCAATGACAGCACAGAGACCAGTGAAGCAGGGGAAGAGGAGGAGGACCACGAGGGAGACAGtGAGA PTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEW|VKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 TRUE,FALSE 78005747,77850818 TRUE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22557 CCDC174::TBC1D5 ENSG00000154781.17::ENSG00000131374.15 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC174 ENSG00000154781.17 protein_coding + + chr3:14651762-14672659:+ chr3:14661707:+ chr3:14693269-14714166:+ chr3:14703214:+ TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17841784:- chr3:17198654-18486309:- chr3:17883276:- chr3:14662342 chr3:17843098 NA NA chr3:14703849 chr3:17884590 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none |Rab-GTPase-TBC_domain(100%) |RabGAP-TBC(100%) 7 10 13 87 16 ENST00000303688.8 unknown downstream downstream mismatches(2) AAAGCAAG___GGAAAAATTGGAAGAAAAAGCCAAATTATATGAAAAAATGACTAAAGGAGACTTTATAG___ATGAAGAAGTAGAGGATATGTACCTTGTGGATTTCACACAGAAGATCATAGACAAGCGCAAAGAAATGGAGGCATCTGGTGCCCATAGAGATTCTCAAAAGGCAGGAGAAAGGGACGACGATGAGGAAAACCTTCCTGAGGGAGAGATCCCTCCTCCCCAAGACCCCAGTGAAGAATG|GTTGCCTTCAGACCCTGAAAGAGATTTTCAGGAGAAATTTCAGTATTCTATATCAAAAAAAAAAAAAAAAAAACATGTTTTCTGGAAATGCAAGAGAATATAAGGAACAGCTTCATCTCAAAATTTGCAAAGCTTGCCTCAAAGCCATCTCAAG___AGTGAAAAAAACCTCAAGATCTTAAAGAATTATTAGAACCTCTCTAAGAAGCAGATAGCACCCCAAAACAACCACGGCATGGTTCGTCTTTCTCCAACCACCTGACGGT...___AGTGTTAAGAGAGCCTCTTCTACTAAAAGAAGACAAGAAGGACTGCTAAGCATAAAACAAGGAATAAAATA KAREKLEEKAKLYEKMTKGDFIDEEVEDMYLVDFTQKIIDKRKEMEASGAHRDSQKAGERDDDEENLPEGEIPPPQDPSEEw|lpsdperdfqekfqysiskkkkkkhvfwkckri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22559 MRPL11::ENSG00000254510 ENSG00000174547.13::ENSG00000254510.3 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MRPL11 ENSG00000174547.13 protein_coding - - chr11:66435075-66466738:- chr11:66437350:- chr11:66202546-66234209:- chr11:66204821:- ENSG00000254510 ENSG00000254510.3 lncRNA + + chr11:66409158-66417227:+ chr11:66416793:+ chr11:66176629-66184698:+ chr11:66184264:+ chr11:66437140 chr11:66414812 NA NA chr11:66204611 chr11:66182283 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ribosomal_protein_L11__N-terminal_domain(100%),Ribosomal_protein_L11__RNA_binding_domain(29%)| Ribosomal_L11(21%),Ribosomal_L11_N(100%)| 7 9 11 667 53 ENST00000310999.11 ENST00000689212.1 upstream upstream mismatches(3) GTTCAATGAGAGGACAAAGGACATCAAGGAAGGCATTCCTCTGCCTACCAAGATTTTAGTGAAG___CCTGACAGGACATTTGAAATTAAGATTGGACAGCCCACTGTTTCCTACTTCCTGAAGGCAGCAGCTGGGATTGAAAAGGGGGCCCGGCAAACAG|ACACATTTGTCCAGAGCAAGACAAGATCACACTTTGACAGCCCTCTGTCAAGATCCTTGCTCCAAATCTCCAGACTAGCAGCCAGGAGTCTCCATGCTGTTCTGAAGAAGCAGATTCCTCACCCACCCTTCAACTCCTTCCCAGGAGGTAATCCTCCTCCAAATCTCTGGAAAAGATACACCTCCTCTTCTCTGATAAAGGCTGGGGGGTGATGCCCCTCCCCCAGTTTCCCAATAAAGCTATGCAAGACAGGgGCAAGGGATCTCACGG FNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQT|dtfvqsktrshfdsplsrsllqisrlaarslhavlkkqiphppfnsfpggnpppnlwkrytssslikagg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22560 PPIG::ROCK2 ENSG00000138398.17::ENSG00000134318.16 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2075 TRUE 3827 TRUE 1443 PPIG ENSG00000138398.17 protein_coding + + chr2:169584342-169641406:+ chr2:169584490:+ chr2:170440852-170497916:+ chr2:170441000:+ ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11249798:- chr2:11319885-11488456:- chr2:11389924:- chr2:169585073,chr2:169585071,chr2:169585072 chr2:11261027,chr2:11261028,chr2:11261028 NA NA chr2:170441583,chr2:170441581,chr2:170441582 chr2:11401153,chr2:11401154,chr2:11401154 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Protein_kinase_domain(93%),Rho_Binding(100%) |ABC1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(40%),Pkinase(42%),Rho_Binding(100%) 6 12 5 167 50 ENST00000676508.1 ENST00000315872.11 downstream downstream duplicates(2),mismatches(1) TGTCTCTCCATGCCAGGACTGAGTTGTGGGGGAGGGAGGCGGTTAGCGGGCTTTAGCGCCTTTTCTGGCGGCGGTAGATTTGAAGCGCTTCAAAGGACCGGACCCAGAGAAGAGGAAAACTCTACCGGTGCAG|GTTCGTCACAAGGCATCGCAGAAGGTTTATGCTATGAAGCTTCTTAGTAAGTTTGAAATGATAAAAAGATCAGATTCTGCCTTTTTTTGGGAAGAAAGAGATATTATGGCCTTTGCCAATAGCCCCTGGGTGGTTCAG___CTTTTTTATGCCTTTCAAGATGATAGGTATCTGTACATGGTAATGGAGTACATGCCTGGTGGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22561 PPIG::ROCK2 ENSG00000138398.17::ENSG00000134318.16 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3827 TRUE 1443 PPIG ENSG00000138398.17 protein_coding + + chr2:169584342-169641406:+ chr2:169584899:+ chr2:170440852-170497916:+ chr2:170441409:+ ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11249798:- chr2:11319885-11488456:- chr2:11389924:- chr2:169585073,chr2:169585071,chr2:169585072 chr2:11261027,chr2:11261028,chr2:11261028 NA NA chr2:170441583,chr2:170441581,chr2:170441582 chr2:11401153,chr2:11401154,chr2:11401154 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Protein_kinase_domain(93%),Rho_Binding(100%) |ABC1(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(40%),Pkinase(42%),Rho_Binding(100%) 0 2 6 45 50 ENST00000679107.1 ENST00000315872.11 downstream downstream duplicates(1),mismatches(1) CTGTgGCAGAAGGAGAAGGCTgGCAGTCGAGCgCCGGGGCCTGGGGACGGTCCTTCCTCTGCCAGCCCCCGCCCTCCCCACTCAGGCGCACACCTCCCTCACTGACGCATTTTGCCGCACAAGCTGTAACATGGCGGCAGCGACTGCGGCCTGAACTCTAGGGAGCCGGGTTGATTTTTAAAGCTTCAAAATCCTAAGACTCAGCACTGTTGCGGG|GTTCGTCACAAGGCATCGCAGAAGGTTTATGCTATGAAGCTTCTTAGTAAGTTTGAAATGATAAAAAGATCAGATTCTGCCTTTTTTTGGGAAGAAAGAGATATTATGGCCTTTGCCAATAGCCCCTGGGTGGTTCAG___CTTTTTTATGCCTTTCAAGATGATAGGTATCTGTACATGGTAATGGAGTACATGCCTGGTGGAGACCTTGTAAACCTTATGAGTAATTATGATGTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22562 USP9Y::WWOX ENSG00000114374.13::ENSG00000186153.19 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP9Y ENSG00000114374.13 protein_coding + + chrY:12537650-12860839:+ chrY:12816344:+ chrY:14649585-14972764:+ chrY:14928279:+ WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78221968:+ chr16:78133297-79246564:+ chr16:78255865:+ chrY:12817339,chrY:12817338,chrY:12817339 chr16:78220502,chr16:78220498,chr16:78220527 NA NA chrY:14929274,chrY:14929273,chrY:14929274 chr16:78254399,chr16:78254395,chr16:78254424 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Ubiquitin_carboxyl-terminal_hydrolase(13%)|short_chain_dehydrogenase(66%) UCH(0%)|KR(65%),adh_short(19%),adh_short_C2(65%) 5 1 12 118 62 ENST00000651177.1 unknown downstream upstream none CCCGCATCCAAAGTTTACCTGCAGTATTTAAGAAGTGGAGAACTACCAGCTGAGCAGGCTATTCCAGTCTGTAGTTCACCCGTTACCATCAATGCCGGTTTTGAGCTACTTGTAGCATTAGCTATTGGCTGTGTGAGGAATCTCAAACAGATAGTAGACTGTTTGACTGAAATGTATTACATGGGCACAGCAATTACTA___CTTGTGAAGCACTTACTGAGTGGGAATATCTGCCCCCTGTTGGACCCCGCCCACCAAAAGGATTTGTGGGACTCAAAAATGCTGGTGCTACGTGTTACATGAACTCTGTGATCCAGCAGCTATACATGATTCCTTCTATCAGGAACAGTATTCTTGCAATTGAAGGCACAGGTAGTGATTTACACGATGATATGTTCGGGGATGAGAAGCAGGACAGTGAG|AATATAAAGAATGAAGCCTGGGGACTGGAACTTAAAACTTCTGCCGAGAAAAGAAAGTCAAGGCCTGTGGGCTCCTAAAACATCCTGTGGAATTCGCCTCAGATGCCCCTCCATTTGCACTGGTATATGGAGGATGTTTGAAAACCACCAGAACCTATTGTGTACTTTGGAACAATGGCATTTTCCTGCTTGATTGTGAAGATGGCCGCTGGAAAAGAAGCCAACTCCCAGGGGGCACGAGGGGCTAAGCTGTCTCCTGGGAAGTTTGAGGGAGGCCAAGTGTTTTCC PASKVYLQYLRSGELPAEQAIPVCSSPVTINAGFELLVALAIGCVRNLKQIVDCLTEMYYMGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIEGTGSDLHDDMFGDEKQDSE|nikneawglelktsaekrksrpvgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22563 WWOX::USP9Y ENSG00000186153.19::ENSG00000114374.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ USP9Y ENSG00000114374.13 protein_coding + - chrY:12537650-12860839:+ chrY:12801569:- chrY:14649585-14972764:+ chrY:14913502:- chr16:78220529,chr16:78220572,chr16:78220576 chrY:12817339,chrY:12817339,chrY:12817339 NA NA chr16:78254426,chr16:78254469,chr16:78254473 chrY:14929274,chrY:14929274,chrY:14929274 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WW_domain(100%),short_chain_dehydrogenase(33%)| KR(15%),WW(100%),adh_short(4%),adh_short_C2(15%)| 2 1 3 68 3 ENST00000683929.1 unknown downstream downstream none GACGGCAGCACCACTGCCATGGAAATTCTCCAGGGCCGGGATTTCACTGGCAAAGTGGTTGTGGTCACTGGAGCTAATTCAGGAATAG___GGTTCGAAACCGCCAAGTCTTTTGCCCTCCATGGTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG|AATGCCGAGTCTAAAAGGGTATGAAGCAGCCTCCCTCAAATAGATACACAGAAACTGAGATACTGCCTTTGTCTTTATGAAGATACAAAATACCTCAGAGACAGAAAATTCTAAATCAAAAGACTTATTTTTTAGAATAAATATTTCTGACAAAAATTCCACTGAAGATCATTCCCGCAAACCAAACATACACTTAGGATTCATG DGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEW|naeskrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22564 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2076 TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115071219:- chr3:114033347-114866139:- chr3:114790066:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115852617:- chr3:115521221-116858236:- chr3:115571464:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Immunoglobulin_domain(72%) |I-set(0%),Ig_2(0%),Ig_3(0%),ig(0%) 2 4 12 23 84 ENST00000675478.1 ENST00000490035.7 upstream downstream mismappers(3),mismatches(1) CAGGACTTACCGTACAACACTCCTTGGCTTCTGGAATTTTATCTCTGCTCACAGTCTACATTACAACATTAGTTCATTCTGGGCACTTTAGCTTCCTTGAATCTCCAGTTGATCTCACACCCATGCCTATGATATTCTTCTCCTGGTTAATCAAGAATTCTCTATTTCTGCTCCGTCATCCATGCCACT|GAAGGGAATTTGAAGGAGAAGAAGAATATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTGAACT___ATCCTCCCACTATCACAGAATCCAAGAGCAATGAAGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,TRUE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22565 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2077 TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115144813:- chr3:114033347-114866139:- chr3:114863660:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115852617:- chr3:115521221-116858236:- chr3:115571464:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Immunoglobulin_domain(72%) |I-set(0%),Ig_2(0%),Ig_3(0%),ig(0%) 8 4 3 30 84 ENST00000470186.1 ENST00000490035.7 upstream downstream mismatches(1) GTTGAGGAAAGAAGATTAAAGAGCGCGAGGAG___ATTTTATAGACCAGTGGAATACAGGCCTTGTGCATATGAAGATCAGGTGACAAGTTTGCTGCCTACCAGCCTCCACAGCAATATGCCCTTTCACG|GAAGGGAATTTGAAGGAGAAGAAGAATATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTGAACT___ATCCTCCCACTATCACAGAATCCAAGAGCAATGAAGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,TRUE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22566 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115147219:- chr3:114033347-114866139:- chr3:114866066:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115852617:- chr3:115521221-116858236:- chr3:115571464:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Immunoglobulin_domain(72%) |I-set(0%),Ig_2(0%),Ig_3(0%),ig(0%) 0 7 0 31 84 ENST00000675478.1 ENST00000490035.7 upstream downstream none GCGGGGGGAAGTTTAGGAGTTGAGGAAAGAAGATTAAAGAGCGCGAGGAG|GAAGGGAATTTGAAGGAGAAGAAGAATATCTGGAGATCCTTGGCATCACCAGGGAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAACGAGGTCTCCTCGGCGGATGTCAAACAAGTCAAGGTCACTGTGAACT___ATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,TRUE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22567 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115071219:- chr3:114033347-114866139:- chr3:114790066:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115842578:- chr3:115521221-116858236:- chr3:115561425:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Immunoglobulin_domain(52%) |I-set(0%),Ig_2(0%),Ig_3(0%),ig(0%) 0 0 0 23 99 ENST00000675478.1 ENST00000490035.7 upstream downstream mismatches(1) CACAGTCTACATTACAACATTAGTTCATTCTGGGCACTTTAGCTTCCTTGAATCTCCAGTTGATCTCACACCCATGCCTATGATATTCTTCTCCTGGTTAATCAAGAATTCTCTATTTCTGCTCCGTCATCCATGCCACT|ATCCTCCCACTATCACAGAcTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22571 HACL1::TBC1D5 ENSG00000131373.15::ENSG00000131374.15 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HACL1 ENSG00000131373.15 protein_coding - - chr3:15560699-15601852:- chr3:15567844:- chr3:15602206-15643359:- chr3:15609351:- TBC1D5 ENSG00000131374.15 protein_coding - + chr3:17157162-18444817:- chr3:18267018:+ chr3:17198654-18486309:- chr3:18308510:+ chr3:15565664,chr3:15565666 chr3:18191698,chr3:18191696 NA NA chr3:15607171,chr3:15607173 chr3:18233190,chr3:18233188 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Thiamine_pyrophosphate_enzyme__C-terminal_TPP_binding_domain(44%),Thiamine_pyrophosphate_enzyme__N-terminal_TPP_binding_domain(100%),Thiamine_pyrophosphate_enzyme__central_domain(100%)| CO_dh(100%),TPP_enzyme_C(12%),TPP_enzyme_M(100%),TPP_enzyme_N(100%)| 2 7 5 125 16 ENST00000321169.10 unknown upstream upstream none TGGTTTGGGATTTGCTATTGCAGCTGCCGTGGTGGCTAAAGATAGAAGCCCTGGGCAATGGATCATCTGTGTGGAAGGAGACAGTGCATTTGGGTTTTCTGGCATGGAGGTAGAAACCATCTGCAG|GCATGGTGTGCAGAAGTCAGCTGTGAAAAGGAGGAATGAAAGCAAGTGAAGGATGCCCTTCATAAGGAACAAGCGATCTCTCTAAAACCAATCCTAGAGTATGGCTTCAGATTCTGCTCCCATTTCTCAATGATTATGAGTTTTGTGCCACATCTTCTCCCCCTTTATCCCTACAATATTTGCATTTCATGTTTTTATTCTC GLGFAIAAAVVAKDRSPGQWIICVEGDSAFGFSGMEVETICr|hgvqksavkrrnesk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22573 OXNAD1::FBLN2 ENSG00000154814.14::ENSG00000163520.14 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2079 FALSE NA FALSE NA OXNAD1 ENSG00000154814.14 protein_coding + + chr3:16265160-16350299:+ chr3:16271722:+ chr3:16306667-16391806:+ chr3:16313229:+ FBLN2 ENSG00000163520.14 protein_coding + + chr3:13549125-13638422:+ chr3:13608062:+ chr3:13590625-13679922:+ chr3:13649562:+ chr3:16280527,chr3:16280528 chr3:13595069,chr3:13595067 NA NA chr3:16322034,chr3:16322035 chr3:13636569,chr3:13636567 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Anaphylotoxin-like_domain(100%),Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),Complement_Clr-like_EGF-like(100%) |ANATO(100%),EGF_CA(100%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 4 3 4 79 34 ENST00000606098.1 ENST00000404922.8 downstream upstream none GGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCAtCTTACTCTAACCAG___CATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAG|GCTCCACCAAGGACCTGATCGAGACTTGCTGCGCAGCCGGACAGCAGTGGGCCATTGACAATGACGAGTGCCTGGAGATCCCTGAGAGTGGCACTGAGGACAACGTCTGCAG...AGCCCAGAGGCACTGCTGTGTCTCCTACTTGCAGGAGAAGAGCTGCATGGCCGGCGTCCTGGGAGCCAAGGAGGGTGAGACCTGTGGGGCTGAGGACAACG ACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRRE|apprt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibulin 2 2 breast cancer, colorectal adenocarcinoma epithelial TSG missense, splice_site 22574 MAST4::ENSG00000289299 ENSG00000069020.19::ENSG00000289299.1 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MAST4 ENSG00000069020.19 protein_coding + + chr5:66596380-67169593:+ chr5:67133646:+ chr5:65892208-66465421:+ chr5:66429474:+ ENSG00000289299 ENSG00000289299.1 lncRNA + - chr10:47207445-47224994:+ chr10:47211245:- chr10:48514368-48531917:+ chr10:48514368:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Domain_of_unknown_function_(DUF1908)(100%),Protein_kinase_domain(63%)| DUF1908(100%),PK_Tyr_Ser-Thr(80%),Pkinase(59%)| 6 4 1 56 7 ENST00000403625.7 unknown downstream downstream duplicates(1),mismappers(1) ACATAAAGCTGACAGATTTTGGATTATCTAAGGTGGGACTAATGAGCATGACTACCAACCTTTACGAGGGTCATATTGAGAAGGATGCTAGAGAGTTCCTGGATAAACAG|GGAATAAAGAGGCCTGAGGAGAAAGAAATAGACAGGGGAATGGCCAGTTGGTGGAGCAGTCAGAACACACCATTTATCAATGGAGTTTGCCGTCTTGTGTGGGCATGGTTCCTGG...CCTCAAAACAATTACAATGGTAACATCAAAGATCACTGACCACAGATCACCAAAACAGATGCAATAATTATGAAAATGTTCAAAATATTGTGAGAATTACCA IKLTDFGLSKVGLMSMTTNLYEGHIEKDAREFLDKQ|gikrpeekeidrgmaswwssqntpfingvcrlvwawfl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 4 AGC MAST O15021 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22583 ROCK2::ENSG00000285939 ENSG00000134318.16::ENSG00000285939.2 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11286539:- chr2:11319885-11488456:- chr2:11426665:- ENSG00000285939 ENSG00000285939.2 lncRNA - + chr17:53276760-54365634:- chr17:53504943:+ chr17:51354121-52442995:- chr17:51582304:+ chr2:11261065,chr2:11261074 chr17:53443301,chr17:53443292 NA NA chr2:11401191,chr2:11401200 chr17:51520662,chr17:51520653 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 0 2 3 35 5 ENST00000315872.11 unknown upstream upstream duplicates(1),low_entropy(1),mismappers(1),mismatches(1) ATCCGAGACCCTCGCTCCCCCATCAACGTGGAGAGCTTGCTG___GATGGCTTAAATTCCTTGGTCCTTGATTTAGATTTTCCTGCTTTGAGGAAAAACAAGAACATAGATAATTTCTTAAATAGAT___ATGAGAAAATTGTGAAAAAAATCAGAGGTCTACAGATGAAGGCAGAAGACTATGATGTTGTAAAAGTTATTGGAAGAGGTGCTTTTGGTGAAGTGCAGTTG|TGTCTTTCCCATGTGGTCCTACATGGAATGCTGTGCCTCATGTCTCTAGGACCC___CACAAGAGGTATTCATGCAGGCCAATCACCAAGTGTTGGCTATCAGAG IRDPRSPINVESLLDGLNSLVLDLDFPALRKNKNIDNFLNRYEKIVKKIRGLQMKAEDYDVVKVIGRGAFGEVQL|clshvvlhgmlclmslgphkryscrpitkcwls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22592 ELP4::WFDC3 ENSG00000109911.19::ENSG00000124116.19 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3832 TRUE 1445 ELP4 ENSG00000109911.19 protein_coding + + chr11:31509755-31790324:+ chr11:31650221:+ chr11:31531302-31811872:+ chr11:31671769:+ WFDC3 ENSG00000124116.19 protein_coding - - chr20:45747944-45791932:- chr20:45775602:- chr20:44376583-44420571:- chr20:44404241:- chr11:31734481,chr11:31734481 chr20:45787740,chr20:45787715 NA NA chr11:31756029,chr11:31756029 chr20:44416379,chr20:44416354 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none PAXNEB_protein(93%)|WAP-type_(Whey_Acidic_Protein)_'four-disulfide_core'(25%) PAXNEB(51%)|WAP(25%) 1 0 1 113 57 ENST00000640961.2 ENST00000243938.9 downstream downstream none CATG___GATTGATTCATATACGGCAGATTCCTCGGCTTAATAACTTGATCTGTGATGAATCAGATGTCAAAGACTTAGCTTTTAAATTAAAAAGGAAGCTATTCACCATTGAG|GGCGGGGCGGTGATTGTCCAAAAGTTCTGGTGGGCCTGTGCATTGTTGGCTGTGTGATGGATGAGAATTGTCAAGCTGGAGAAAAATGTTGCAAGTCAG HGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIE|ggavivqkfwwacallav* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22593 ELP4::WFDC3 ENSG00000109911.19::ENSG00000124116.19 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3832 TRUE 1445 ELP4 ENSG00000109911.19 protein_coding + + chr11:31509755-31790324:+ chr11:31650221:+ chr11:31531302-31811872:+ chr11:31671769:+ WFDC3 ENSG00000124116.19 protein_coding - - chr20:45747944-45791932:- chr20:45758431:- chr20:44376583-44420571:- chr20:44387070:- chr11:31734481,chr11:31734481 chr20:45787740,chr20:45787715 NA NA chr11:31756029,chr11:31756029 chr20:44416379,chr20:44416354 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none PAXNEB_protein(93%)| PAXNEB(51%)| 2 0 0 113 8 ENST00000640961.2 ENST00000481847.5 downstream downstream none CGATATTTGCTGTGCAGAAAATGGTGGCAACAGTCACAGCCTTACCAAGTTCCTCTATGTTCTCCGTGGTCTTCTGAGAACCTCTCTTTCAGCCTGCATCA...TTATTGGTTCTGAGAGAGAAACTAACCCATTGTATAAGGATTATCATG___GATTGATTCATATACGGCAGATTCCTCGGCTTAATAACTTGATCTGTGATGAATCAGATGTCAAAGACTTAGCTTTTAAATTAAAAAGGAAGCTATTCACCATTGAG|GAAGAGGACACCCACCCTGGTACCTGGTCCCTGGCGAGAG IGSERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIE|eedthpgtwslar NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22606 MIR548XHG::TMPRSS15 ENSG00000224141.6::ENSG00000154646.9 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3836 FALSE NA MIR548XHG ENSG00000224141.6 lncRNA - - chr21:18561265-18760320:- chr21:18737924:- chr21:19933583-20132638:- chr21:20110242:- TMPRSS15 ENSG00000154646.9 protein_coding - - chr21:18269116-18485879:- chr21:18398329:- chr21:19641433-19858197:- chr21:19770646:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through low none |CUB_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%),MAM_domain__meprin/A5/mu(100%),SEA_domain(100%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%) |CUB(100%),DUF1986(100%),Ldl_recept_a(100%),MAM(100%),SEA(100%),SRCR(100%),SRCR_2(100%),Trypsin(100%) 0 1 0 118 24 ENST00000671206.1 ENST00000284885.8 upstream downstream none GTATCACACTCTACCCAAGTCCCAAAAGCAGGTTCACATAACTCCTGTCTTCATTATCTGATATCCG|GTGCAGCACTTGGACAGAGTCATGAAGCCAGAGCGACATTTAAAATAACATCCGGAGTTACATATAATCCTAATTTGCAAGACAAACTCTCAGTGGATTTCAAAGTTCTTGCTTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22608 PPP1CC::HVCN1 ENSG00000186298.12::ENSG00000122986.14 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1CC ENSG00000186298.12 protein_coding - - chr12:110719680-110742939:- chr12:110742653:- chr12:111157485-111180744:- chr12:111180458:- HVCN1 ENSG00000122986.14 protein_coding - + chr12:110627841-110704950:- chr12:110699526:+ chr12:111065646-111142755:- chr12:111137331:+ chr12:110736134,chr12:110736136 chr12:110694815,chr12:110694813 NA NA chr12:111173939,chr12:111173941 chr12:111132620,chr12:111132618 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Serine-threonine_protein_phosphatase_N-terminal_domain(20%)| STPPase_N(0%)| 1 1 2 495 4 ENST00000335007.10 unknown upstream upstream duplicates(1),mismatches(2) CACCGCCTCTGCTCGTGGCGTGGGAAAGGAGGTGTGAGTCCCGGGCGCGAGCCGGCGGCGGCGCCGCTGCGGGAGGGTCGGCGGTGGGAAGGCGATGGCGGATTTAGATAAACTCAACATCGACAGCATTATCCAACGGCTGCTGGAAG|CCTAGGAGCCCAGTCCAGGAGCTGAGGGAGAGACAGAGAAGACGAGGTCCTTTCTGGTAAGGGACACACTCGAAGTGCGGGAGGCAGAGCCGAGAACAGCCAGATCGAATGTGAGGCTGAAGAGTGAAATGGCCAGTGATGATGATAACGGGGAGATAAC...GCCAGGCGCTGCGCCGGGCACATGATACACATCTCTTCTTCTAGTCTTCACAATGGCCATGAGGTAGGCCCTCCGATGAGTTAGGATTATGTTCTGCGCAG MADLDKLNIDSIIQRLLE|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22640 LINC02964::PVT1 ENSG00000286122.1::ENSG00000249859.14 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3840 FALSE NA LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125725888:+ chr8:126660571-127021174:+ chr8:126738132:+ PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127989611:- chr8:128806772-129199347:+ chr8:129001857:- chr8:125779332,chr8:125779331 chr8:127990024,chr8:127990025 NA NA chr8:126791576,chr8:126791575 chr8:129002270,chr8:129002271 NA NA sense antisense unknown exon/splice-site exon inversion/3'-3' high none none none 10 14 39 100 71 ENST00000651999.1 unknown downstream downstream duplicates(8),mismatches(3),multimappers(1) CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___...AAG___CGCAGTGAGATTGGAGAGCATCCTCCGATGCACTGTACATTTGGGAGGAAGAGAAAGGATAAGAGCCCTGCTGATTCAGTGGTGGTCATTATCATTGTCAATGGAGCTGTCACTGTTATCGTCATTTTCGTTTGCGGTGAG|GCTGTCTCCACATGTTTTCACAAGACAGCTGGAGCATCCTGCACCTTCTGCTACAAGTGGCGCATTCACTAGGAGATGGTGGGCTCCTCCCTCCACTAGGGACAGAGGGAGAGCTTCCTAGGCACAATGAATAAGTGGACTAGACTCTGAGAACCAGGTCGGGGAGAGGTTATGGGGAGCCAGCTTCCCGAACACATTGGAGCGGCACAGGAAGACACACCGAGAGGTCAAGAACCACAACCCAAGCTGTGCTGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22643 FAM172A::SLC24A3 ENSG00000113391.19::ENSG00000185052.13 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM172A ENSG00000113391.19 protein_coding - - chr5:93617725-94111699:- chr5:93958777:- chr5:92953431-93447404:- chr5:93294482:- SLC24A3 ENSG00000185052.13 protein_coding + - chr20:19212642-19722926:+ chr20:19338067:- chr20:19193286-19703570:+ chr20:19318711:- chr5:93883988,chr5:93883990 chr20:19347147,chr20:19347146 NA NA chr5:93219694,chr5:93219696 chr20:19327791,chr20:19327790 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Arb2_domain(35%)| Arb2(33%)| 7 18 23 63 33 ENST00000395965.8 unknown upstream downstream duplicates(2),low_entropy(1),mismatches(2) AAAAAGTATCTATTCCA___GTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATGAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCT|TTCTCCATTCATCCCTGTATCCACGCCCTTTGCAATTGGATTTTTCTCCTCCCATCCTGTGGTGCCTCTATCCCCTGAAGATGGGCCATCTTTGTGACTTGATATGGGCAAGATAATTGAAGGAAGTGATGCTGTGCCACCCCTGCCACCACCCTATGAACAAGTCTCAACTGGCTACTGAGTGATGAGAGGCAAGTGCCAGCCAAAAGCCAGCCAACCACAAGACATGAGAGGCCATCCTAATCGAGCCAGCCCCAAGCTGACCACCAGATGATCACAGAGGCATGAACAAGCTCAGCAACCACCAGCTGATCCTGGCCCAGAGC KVSIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVA|fsihpcihalcnwifllpscgasip* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22646 EIF3B::SNX8 ENSG00000106263.19::ENSG00000106266.11 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3B ENSG00000106263.19 protein_coding + + chr7:2354086-2380745:+ chr7:2360902:+ chr7:2393721-2420380:+ chr7:2400537:+ SNX8 ENSG00000106266.11 protein_coding - + chr7:2251770-2354318:- chr7:2353914:+ chr7:2291405-2393953:- chr7:2393549:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(48%)| RRM_1(4%)| 17 1 6 1336 29 ENST00000360876.9 unknown downstream upstream duplicates(1),mismatches(2) GGGCAGAGCGGCCGAGGCCGAACCCCGGGCGCTGGAGAACGGCGACGCGGACGAGCCCTCCTTCAGCGACCCCGAGGACTTCGTGGACGACGTGAGCGAGGAAG___AATTACTGGGAGATGTACTCAAAGATCGGCCCCAGGAAGCAGATGGAATCGATTCGGTGATTGTAGTGGACAATGTCCCTCAGGTGGGACCCGACCGACTTGAGAAACTCAAAAATGTCATCCACAAGATCTTTTCCAAGTTTGGGAAAATCACAAATGATTTTTATCCTGAAGAGGATGGGAAGACAAAAGG|GATGATTAAGACATCCCCCAACCAGTGGTTGTCCTCCACTCCGGCAAAAAACAAGATAGAAGCCACATGCACCCAATGCCCGTCCCGTGAGCACCCGCGCAGAGCGAACCGCTCCGGTCCCTCCGGAGTCAGCCTCGAG GRAAEAEPRALENGDADEPSFSDPEDFVDDVSEEELLGDVLKDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKg|miktspnqwlsstpaknkieatctqcpsrehprranrsgpsgvsl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22647 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2085 FALSE NA FALSE NA PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140761165:- chr8:141667999-142012315:- chr8:141771264:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140371180:- chr8:140739968-141468678:- chr8:141381279:- chr8:140756179,chr8:140756179,chr8:140756184 chr8:140392080,chr8:140392069,chr8:140392027 NA NA chr8:141766278,chr8:141766278,chr8:141766283 chr8:141402179,chr8:141402168,chr8:141402126 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none FERM_N-terminal_domain(100%),FERM_central_domain(100%),Protein_kinase_domain(9%)|Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(75%) FERM_M(100%),FERM_N_2(100%),PK_Tyr_Ser-Thr(0%),Pkinase(0%)|TRAPPC9-Trs120(69%) 5 6 10 86 34 ENST00000522684.5 ENST00000648948.2 upstream downstream duplicates(1),mismatches(1) GTGACGGCACCATCCCTAACCATTGCGGAGAATATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGgCC...GGCTTTGCCATCAATACCAAA___GTTGGCCAACAGCGAAAAGCAAGGCATGCGGACACACGCCGTCTCTGTGTCAG___AAACAGATGATTATGCTGAGATTATAGATGAAGAAGATACTTACACCATGCCCTCAA___CCAGGGATTATGAGATTCAAAGAGAAAGAATAGAACTTGGACGATGTATTGGAGAAGGCCAATTTGGAGATGTACATCAAGGCATTTATATGAGTCCA|CTTTCTGAGGAAGAGAAAATTCAGCGCTACAGCATCCTCTCCGAGCTCTATGAGCTGATCGGCTTCCATCGCAAGTCTGCGTTCTTCAAGCGCGTGGCCGCCATGCAGTGCGTGGCCCCAAGCATCGCGGAGCCTGGGTGGAGGGCCTGCTACAAACTCCTCCTGGAAACGCTGCCCGGCTACAGTCTGTCGCTGGATCCCAAAGATTTCAGCAGAG___GCACGCACAGAGGCTGGGCTGCGGTCCAGATGCGT ALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSP|LSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22648 YTHDF3::NKAIN3 ENSG00000185728.17::ENSG00000185942.13 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2086 TRUE 3841 TRUE 1446 YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63187745:+ chr8:64081112-64125344:+ chr8:64100303:+ NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62965354:+ chr8:63161150-63926559:+ chr8:63877913:+ chr8:63201983,chr8:63201985 chr8:62952164,chr8:62952151 NA NA chr8:64114541,chr8:64114543 chr8:63864723,chr8:63864710 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none YT521-B-like_domain(100%)|Na_K-Atpase_Interacting_protein(0%) YTH(100%)|NKAIN(4%) 3 7 7 148 23 ENST00000617200.1 ENST00000623646.3 downstream upstream duplicates(2),mismatches(1) GCAAATTTGAAGTTAAATGGATCTTTGTCAAAGATGTTCCCAATAACCAATTACGGCATATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGAGGTACCCCTAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGAGGAAGCCATGCGTAGG|GTCGAAATAAGTAATGACATTGAACCAGAAATGCGGCTGCTGAACTTGACTTAGGGAGCAAAGGACCATTGACTGCGCGCCTCGGTGGATCCGACCCGCCTGACATTCCTTCCAGAGGCTAGACTGTGCTTCCTGGCTTTCCCACGAATCATGGAGCATTTTGGTCACAGCCTTTGTATTATTAGCATTGTTCTCTAGATGAGTTCTAGGTGCTTGGGTGGGTATTTTTTTAGTCG KFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRR|VEISNDIEPEMRLLNLT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22649 YTHDF3::NKAIN3 ENSG00000185728.17::ENSG00000185942.13 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3841 TRUE 1446 YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63187745:+ chr8:64081112-64125344:+ chr8:64100303:+ NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:63011987:+ chr8:63161150-63926559:+ chr8:63924546:+ chr8:63201983,chr8:63201985 chr8:62952164,chr8:62952151 NA NA chr8:64114541,chr8:64114543 chr8:63864723,chr8:63864710 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none YT521-B-like_domain(100%)| YTH(100%)| 1 0 1 148 8 ENST00000617200.1 ENST00000674864.1 downstream upstream none GGGACACTCAAGAGGTACCCCTAGAAAAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCACATTATGAAAAGCGTCAAGAAGAGGAGGAAGCCATGCGTAGG|GTTTATTATAAAGGACTTACAAAGGAC DTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRR|vyykgltk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22650 BMAL2::ENSG00000256615 ENSG00000029153.15::ENSG00000256615.1 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BMAL2 ENSG00000029153.15 protein_coding + + chr12:27332836-27425289:+ chr12:27403541:+ chr12:27485769-27578222:+ chr12:27556474:+ ENSG00000256615 ENSG00000256615.1 lncRNA + + chr12:21662313-21760032:+ chr12:21759914:+ chr12:21815247-21912966:+ chr12:21912848:+ chr12:27412288,chr12:27412285 chr12:21727850,chr12:21727835 NA NA chr12:27565221,chr12:27565218 chr12:21880784,chr12:21880769 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Helix-loop-helix_DNA-binding_domain(100%),PAS_domain(100%),PAS_fold(100%)| HLH(100%),PAS(100%),PAS_11(100%),PAS_3(100%),PAS_9(100%)| 8 7 0 416 23 ENST00000266503.10 ENST00000541860.1 downstream upstream none CCTTGTGGCCATTGGAAGATTACAGCCATATATTGTTCCACAGAACAGTGGAGAGATTAATGTGAAACCAACTGAATTTATAACCCGGTTTGCAGTGAATGG...AATAATTTGACTGACAAGCACAAAGCAG___TTCTACAGAGTAAGGAGAAAATACTTACAGATTCCTACAAATTCAGAGCAAAAGATGGCTCTTTTGTAACTTTAAAAAGCCAATGGTTTAGTTTCACAAATCCTTGGACAAAAGAAC...CCTGGAGAAGCATCATTTTTACCTTGTAGCTCTCAATCATCAGAAG___AATCCTCTAGACAGTCCTGTATGAGTGTACCTGGAATGTCTACTGGAACAGTACTTGGTGCTGGTAGTATTGGAACAGATATTGCAAATGAAATTCTGGATTTACAGAG|GTTTTATCTTCATCAGCCTGGTCAAAGCTGGATTTCCATCACACATGTGCTCACTCCACGGAACGTGCAAAAGGTCAAGACATAC...GAAAGTGGTCCACTAGCTTCTGTTCATAGGACATTGAGCCCCAGATTTGGCACATGACC___GTCACCCACTCGGAACATGAAGCACAGCTTGCCATTTCGGAC PGEASFLPCSSQSSEESSRQSCMSVPGMSTGTVLGAGSIGTDIANEILDLQr|fylhqpgqswisithvltprnvqkvkt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22651 TMEM38B::ENSG00000286536 ENSG00000095209.12::ENSG00000286536.1 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM38B ENSG00000095209.12 protein_coding + + chr9:105694541-105776629:+ chr9:105748190:+ chr9:108456822-108538910:+ chr9:108510471:+ ENSG00000286536 ENSG00000286536.1 lncRNA - + chr9:105025932-105239221:- chr9:105068613:+ chr9:107788213-108001502:- chr9:107830894:+ chr9:105750141,chr9:105750134,chr9:105750133 chr9:105054700,chr9:105054698,chr9:105054689 NA NA chr9:108512422,chr9:108512415,chr9:108512414 chr9:107816981,chr9:107816979,chr9:107816970 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none TRIC_channel(96%)| TRIC(67%)| 5 2 3 578 6 ENST00000374692.8 unknown downstream upstream duplicates(1),mismappers(1),mismatches(1) ATTGAAGTTTCTTGCAAACCACACTAACATATTACTGGCATCTTCAATCTG___GTATATTACATTTTTTTGCCCGCATGACCTAGTTTCCCAGGGCTATTCATATtTACCTGTTCAACTACTGGCTTCGGGAATGAAGGAAGTGACCAGAACTTGGAAAATA___GTGCAGGTGGTACCATTATAACGAATTTTGAGAGGTTGGT...GGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCATA___CCCTGCCAAGGTAACCCTGCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTCCTTTATACCATCTTTATTGTGGCCACAAAG|AGTTTCGCTCTTGTGGTCCAGGCTGGAGTGCAATGGCGTGATCTCAGCTCACTGCAACTTCTGCTTCCAGGGTTCAAGCGATTCTCCTGCCTCAACCTCCTG GDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATK|sfalvvqagvqwrdlsslqlllpgfkrfsclnl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22652 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125680044:+ chr8:126660571-127021174:+ chr8:126692288:+ LINC00861 ENSG00000245164.10 lncRNA - + chr8:125859721-126292788:- chr8:126107421:+ chr8:126871965-127305033:- chr8:127119665:+ chr8:125680375,chr8:125680385,chr8:125680391,chr8:125680396,chr8:125680399,chr8:125680389,chr8:125680333,chr8:125680334,chr8:125680335,chr8:125680352,chr8:125680370,chr8:125680371 chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225,chr8:126104225 NA NA chr8:126692619,chr8:126692629,chr8:126692635,chr8:126692640,chr8:126692643,chr8:126692633,chr8:126692577,chr8:126692578,chr8:126692579,chr8:126692596,chr8:126692614,chr8:126692615 chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469,chr8:127116469 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 2 6 118 34 ENST00000651999.1 unknown downstream upstream duplicates(1),mismappers(3) CCTGCTCCGGTTCCAGTTTCTTACAGG___CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAGGTATGGATAATTAAG|CATCCTGGTTCTCTGAAGACAAGTGTCATGGAAATACTTTTGGATAGGCAAAAATGCATTCATTCCTTGGTCTATTCAAAGAGTCAATATCTCTAAGAACGGCAGCTGCGTTATCCAAAACATGG...GTATTGTGATGATTGATACTTTGGAGTTTTTTCTGCTGCATCTCTCATAGCAAGGTTACTCTTTAAAAACTATTGCTCAAATACCATTCAGGACATTGGCATGGACAAAGACTTCATAACTAAAACACCAAAAGCAATTGCAATGAAAGCCAAAATTGACAAATGGAATCTAATCAAACTAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22655 LINC02964::PCAT1 ENSG00000286122.1::ENSG00000253438.5 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125665864:+ chr8:126660571-127021174:+ chr8:126678108:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127006555:+ chr8:127568568-128431295:+ chr8:128018800:+ chr8:125679200,chr8:125679199,chr8:125679199,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382,chr8:125804382 chr8:126998265,chr8:126998267,chr8:126998298,chr8:126885148,chr8:126885138,chr8:126885185,chr8:126885184,chr8:126885178,chr8:126885174,chr8:126885151,chr8:126885156,chr8:126885153 NA NA chr8:126691444,chr8:126691443,chr8:126691443,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626,chr8:126816626 chr8:128010510,chr8:128010512,chr8:128010543,chr8:127897393,chr8:127897383,chr8:127897430,chr8:127897429,chr8:127897423,chr8:127897419,chr8:127897396,chr8:127897401,chr8:127897398 NA NA sense sense unknown intron exon/splice-site deletion high none none none 1 2 2 20 4 unknown ENST00000645463.1 downstream upstream mismappers(1) GAAGCCCTTCCACCTCCCAGAGCCTGATGGGATGGAGCCCAACATTGACTGCTTATTTGAGTCACCTGG|ATCCAGCCACCTCTTGGGATGCACACGTTTCTCTTCAACTGCGTGATGTGAACTGCGTCACATG___AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22657 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127984451:- chr8:128806772-129199347:+ chr8:128996697:- chr8:127213036,chr8:127213041 chr8:127984699,chr8:127984734 NA NA chr8:128225281,chr8:128225286 chr8:128996945,chr8:128996980 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 0 1 3 8 3 ENST00000641496.2 unknown upstream downstream none CACGATTCACAGAAAAATCCATGCTGTTCTTTGAAGGCATTCAAGCCTTAATAGCTAGCTGGATGAATGTTTAACTTCTAGGCCAGGCACTACTCTGTCCCAACAATAAGCCCTGTACATTGGGAAAGGTGCCGAGACATGAACTTTGGTCTTCTCTGCAATCCATCTGGAGCATTCACTGACAACATCGACTTTGAAGTTGCACTGACCTGGCCAGCCCTGCCACTTACCAGGTTGG|GCAAATTAGGTTTCAGGA...GATAGcCTGGATTTGAATCCTAGCTCTGCCACTTGCTGaGAATGTGACTATTGACAAACCACTCTACTTCCCGATGGCTCCGTTTTCTTATCTACAGAGACGCGGACGTGATCAGCAGCCATAGGGGACCATTGAGGATTACAGAATTAAAGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22672 SLC4A7::PPP2R3A ENSG00000033867.17::ENSG00000073711.11 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC4A7 ENSG00000033867.17 protein_coding - - chr3:27372721-27484420:- chr3:27433916:- chr3:27414212-27525911:- chr3:27475407:- PPP2R3A ENSG00000073711.11 protein_coding + + chr3:135965728-136147894:+ chr3:136145043:+ chr3:135684570-135866736:+ chr3:135863885:+ chr3:27426850 chr3:136126483 NA NA chr3:27468341 chr3:135845325 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Band_3_cytoplasmic_domain(27%)| Band_3_cyto(18%)| 2 0 0 81 47 ENST00000454389.6 ENST00000264977.8 upstream upstream none GAAGAATATGAATGGAAAGAAACTGCTAG___ATGGCTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGGCAACTCTCTC...AGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCACCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAATG|CTTTGAAGATTATGAAACAGATGAACCTGCCTCTCCC REALLKRHHHQNEKRFTSRIPLVRSFADIGKKHSDPHLLERN|alkimkqmnlpl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22677 PRRG4::QSER1 ENSG00000135378.4::ENSG00000060749.17 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRRG4 ENSG00000135378.4 protein_coding + + chr11:32829927-32858120:+ chr11:32840239:+ chr11:32851473-32879666:+ chr11:32861785:+ QSER1 ENSG00000060749.17 protein_coding + + chr11:32892811-32993316:+ chr11:32927157:+ chr11:32914357-33014862:+ chr11:32948703:+ chr11:32843430 chr11:32921536 NA NA chr11:32864976 chr11:32943082 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Vitamin_K-dependent_carboxylation/gamma-carboxyglutamic_(GLA)_domain(100%)|Domain_of_unknown_function_(DUF4211)(100%) Gla(100%)|DUF4211(100%) 1 0 4 24 16 ENST00000257836.4 ENST00000527250.5 downstream upstream duplicates(2),mismappers(1),mismatches(2) AGATTGCATTTTGGCAGGAATATTCAGCTAAAGGACCAACCACAAAATCAG___ATGGCAACAGAGAGAAAATAGATGTTATGGGCCTTCTGACTGGATTAATTGCTGCTGGAGTATTTTTGGTTATTTTTGGATTACTTGGCTACTATCTTTGTATCACTAAGTGTAATAGGCTACAACATCCATG|TTTAAGCTATGAAGAAGGACATCCCTCACACTCTGAAACAGATCTCCTTCAGAGACAGAGTTTTGCAGCCTCTCATCAGCTTCCTGG...CCATCTCTCTCTGCTTATCAGCATCCCACCACCTTCAGCAATAGAAACTTTGCTACCACTTCACCTTTGGTGCTTCAGGATTCAACTTTTAACACTACAT IAFWQEYSAKGPTTKSDGNREKIDVMGLLTGLIAAGVFLVIFGLLGYYLCITKCNRLQHPc|lsyeeghpshsetdllqrqsfaashqlp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22683 TUSC3::CSMD1 ENSG00000104723.21::ENSG00000183117.20 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TUSC3 ENSG00000104723.21 protein_coding + + chr8:15417215-15766649:+ chr8:15662273:+ chr8:15274724-15624158:+ chr8:15519782:+ CSMD1 ENSG00000183117.20 protein_coding - - chr8:2935353-4994972:- chr8:4988782:- chr8:2792875-4852494:- chr8:4846304:- chr8:15663031,chr8:15663032 chr8:4990637,chr8:4990636 NA NA chr8:15520540,chr8:15520541 chr8:4848159,chr8:4848158 NA NA sense sense unknown CDS intron inversion low none OST3_/_OST6_family__transporter_family(60%)|CUB_domain(100%),Sushi_repeat_(SCR_repeat)(100%) OST3_OST6(31%)|CUB(100%),Sushi(100%) 0 0 2 6 3 ENST00000382020.8 unknown downstream downstream none ACCCAACTACTCTGGTACCATTGCTTTGGCCCTGTTAGTGTCGCTTGTTGGAGGTTTGCTTTATTTGAGAAGGAACAACTTGGAGTTCATCTATAACAAGA...|...CTTTTCTGAGCTCAGTTGCAATTTTCTTTAAACCATTTGTATCAACCTGTACTTTATGGGAGAGGAAAATGCCATCAGTGCTTTAGGGAAGTTGCAGAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22685 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127984204:+ chr8:128806772-129199347:+ chr8:128996450:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:127984699,chr8:127984734,chr8:128120810,chr8:128120855,chr8:128120855,chr8:128120855 chr8:127213036,chr8:127213041,chr8:126691056,chr8:126691052,chr8:126691048,chr8:126691022 NA NA chr8:128996945,chr8:128996980,chr8:129133056,chr8:129133101,chr8:129133101,chr8:129133101 chr8:128225281,chr8:128225286,chr8:127703301,chr8:127703297,chr8:127703293,chr8:127703267 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 1 0 1 32 5 ENST00000660631.1 ENST00000645463.1 downstream upstream none GAACTCCTGACCTCAAGTGATCCACTCACTTTGGCCTTTCAACGTGCTGGGATTACAGGCGAGAGTCACCGCACCCGGACGACTCTGACATTTTTGAAGAGTCCAG|ACACAGTCAGCCtAATGAAGGAGGAGGAGGAAAAGGAGGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22705 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25865049:- chr20:25743020-25848861:- chr20:25845685:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none PRO8NT_(NUC069)__PrP8_N-terminal_domain(100%),PROCN_(NUC071)_domain(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(36%)| PRO8NT(100%),PROCN(100%),RRM_4(100%),U5_2-snRNA_bdg(2%)| 40 37 94 536 222 ENST00000304992.11 unknown upstream downstream duplicates(50),low_entropy(1),mismatches(25),multimappers(2) CCAACCTGCTGTTCAACATGTGTGGCTTCGAGTGCCGCATCCTGCCTAAGTGCCGCACCAGCTATGAGGAGTTCACCCACAAGGACGGGGTCTGGAACCTGCAGAATGAG___GTTACTAAGGAGCGCACAGCTCAGTGTTTCCTGCGTGTGGACGATGAGTCAATGCAGCGCTTCCACAACCGCGTGCGTCAGATTCTCATGGCCTCTGGGTCCACCACCTTCACCAAG|CATCAAGATGAAAACACTGCAGCTGAGGACAAGAGCCCCACAGGAGCTCTTTGTCCCACAGGAGAGCAGCGGACCCACGTCAGAGAAGATGCTTGTATCTTTTCACGGCTCTTCTCTGAGAAATGAAGCCATAGCACGATACAGTCTGCAAGAGGAAGCCGGGAATGGGAGATGGCAACAATCCCTGTCACTGGATCGCTGGTTTCTCTGGACAAGCCACGCTTTTGGATCCCCTCCCCTTATGCCTGTGGCGGTGGCACCGTGCTGT NLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK|hqdentaaedksptgalcptgeqrthvredacifsrlfsek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22706 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25848948:- chr20:25743020-25848861:- chr20:25829584:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none PRO8NT_(NUC069)__PrP8_N-terminal_domain(100%),PROCN_(NUC071)_domain(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(36%)| PRO8NT(100%),PROCN(100%),RRM_4(100%),U5_2-snRNA_bdg(2%)| 3 4 14 536 28 ENST00000304992.11 ENST00000662978.1 upstream downstream duplicates(5),mismatches(3),multimappers(2) GGACAACCCCAACCTGCTGTTCAACATGTGTGGCTTCGAGTGCCGCATCCTGCCTAAGTGCCGCACCAGCTATGAGGAGTTCACCCACAAGGACGGGGTCTGGAACCTGCAGAATGAG___GTTACTAAGGAGCGCACAGCTCAGTGTTTCCTGCGTGTGGACGATGAGTCAATGCAGCGCTTCCACAACCGCGTGCGTCAGATTCTCATGGCCTCTGGGTCCACCACCTTCACCAAG|GTAAGATTGGGGAAGATGCCAGGTGATAGAATCCACCCTGCCTCTGACAGCATCCAATCTGGAGCAAAGGCTTCTTTCAACCTTCCCCCAAGCTCCCAATACAAGCCCAAATTCTGGAACAAGTCCTTTCCAACACCTCCTTCAGAGAAGCTCCCTGGCTCCAGGCAGTGCTTGCTCCCCTCACTGCAGCAGGAAGCCTAACTTGCGAACTGCAGGTGTGCTCCAGGTGGTCACTGGATGCAAG DNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK|vrlgkmpgdrihpasdsiqsgakasfnlppssqykpkfwnksfptppseklpgsrqcllpslqqea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22707 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25775312:- chr20:25743020-25848861:- chr20:25755948:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none PRO8NT_(NUC069)__PrP8_N-terminal_domain(100%),PROCN_(NUC071)_domain(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(36%)| PRO8NT(100%),PROCN(100%),RRM_4(100%),U5_2-snRNA_bdg(2%)| 1 3 4 536 45 ENST00000304992.11 ENST00000376403.5 upstream downstream duplicates(2),mismatches(1) CTTCGAGTGCCGCATCCTGCCTAAGTGCCGCACCAGCTATGAGGAGTTCACCCACAAGGACGGGGTCTGGAACCTGCAGAATGAG___GTTACTAAGGAGCGCACAGCTCAGTGTTTCCTGCGTGTGGACGATGAGTCAATGCAGCGCTTCCACAACCGCGTGCGTCAGATTCTCATGGCCTCTGGGTCCACCACCTTCACCAAG|AAATGGTGCGAGAACTTTGGATGTGGAACGTGGAGGAGGAGGAACACGAAGTGGGGATCTGCACTTGGGGTGGTCAGCACTGCGGATGCCCAGCAAAGTCACTGCCTGGTCCACATCCCGG...AAACTTCGGAgGGTATCCGCTACATCCTCCATAGCCGTGTATCCCTGCCCAGGGCAATCTTCTGGGGGAGCGGAAAGTCCTGCTCCCGGGCCAGGGCTGGCTGGCTGGAGCCACTTGTGCGGCGCAGCCCTGGCGGAGGTTCAGGCGGCCCCGGTGTCGCAAGCGGC FECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK|kwcenfgcgtwrrrntkwgsalgvvstadaqqshclvhip NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22708 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25775336:- chr20:25743020-25848861:- chr20:25755972:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none PRO8NT_(NUC069)__PrP8_N-terminal_domain(100%),PROCN_(NUC071)_domain(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(36%)| PRO8NT(100%),PROCN(100%),RRM_4(100%),U5_2-snRNA_bdg(2%)| 3 0 4 536 34 ENST00000304992.11 ENST00000665932.1 upstream downstream none CCCGCATGCGCCTCATGAAACATGATGTTAACTT___AGGCCGGGCGGTATTCTGGGACATCAAGAACCGCTTGCCACGGTCAGTGACTACAGTTCAGTGGGAGAACAGCTTCGTGTCTGTGTACAGTAAGGACA...GCTATGAGGAGTTCACCCACAAGGACGGGGTCTGGAACCTGCAGAATGAG___GTTACTAAGGAGCGCACAGCTCAGTGTTTCCTGCGTGTGGACGATGAGTCAATGCAGCGCTTCCACAACCGCGTGCGTCAGATTCTCATGGCCTCTGGGTCCACCACCTTCACCAAG|TTTCTTTTGATTTCTCCTGCTTAGAAATGGTGCGAGAACTTTGGATGTGGAACGTGGAGGAGGAGGAACACGAAGTGGGGATCTGCACTTGGGGTGGTCAGCACTGCGGATGCCCAGCAAAGTCACTGCCTGGTCCACATCCCGG YEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK|fllispa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22709 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25786988:- chr20:25743020-25848861:- chr20:25767624:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none PRO8NT_(NUC069)__PrP8_N-terminal_domain(100%),PROCN_(NUC071)_domain(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(36%)| PRO8NT(100%),PROCN(100%),RRM_4(100%),U5_2-snRNA_bdg(2%)| 0 0 7 536 1 ENST00000304992.11 ENST00000478164.1 upstream downstream duplicates(1),mismatches(2),multimappers(3) GGACAACCCCAACCTGCTGTTCAACATGTGTGGCTTCGAGTGCCGCATCCTGCCTAAGTGCCGCACCAGCTATGAGGAGTTCACCCACAAGGACGGGGTCTGGAACCTGCAGAATGAG___GTTACTAAGGAGCGCACAGCTCAGTGTTTCCTGCGTGTGGACGATGAGTCAATGCAGCGCTTCCACAACCGCGTGCGTCAGATTCTCATGGCCTCTGGGTCCACCACCTTCACCAAG|GTAAGATTGGGGAAGATGCCAGGTGATAGAATCCACCCTGCCTCTGAC...CCTCCTTCAGAGAAGCTCCCTGGCTCCAGGCAGTGCTTGCTCCCCTCACTGCAGCAGGAAGCCTAACTTGCGAACTGCAGGTGTGCTCCAGGTGGTCACTGGATGCAAG___AAAT DNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTK|vrlgkmpgdrihpas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22710 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE TRUE 2087 TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44672596:+ chr19:45165545-45187631:+ chr19:45175868:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Eukaryotic_porin(48%)|Immunoglobulin_V-set_domain(100%) Porin_3(21%)|V-set(100%) 49 43 67 1372 266 ENST00000252487.9 ENST00000358777.10 downstream upstream duplicates(40),mismatches(15),multimappers(1) TGGACAACAGTGGCAGTCTCAACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAG___ACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAG|CCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCAGGCAGCTCTCTACATCCAGAAGATTCCAGAGCAGCCTCAAAAGAACCAGGACCTTCTCCTGTCAGTCCAGGGTGTCCCAGACACCTTCCAGGACTTCAACTGGTACCTGGGGGAGGAGACGTACGGAGGCACGAGGCTATTTACCTACATCCCTGGGATACAACGGCCTCAGAGGGATGGCAGTGCCATGGGACAGCGAGACATCGTGGGCTTCCCCAA DNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGS|aSILVLWMLQGSQAALYIQKIPEQPQKNQDLLLSVQGVPDTFQDFNWYLGEETYGGTRLFTYIPGIQRPQRDGSAMGQRDIVGFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22711 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44671304:+ chr19:45165545-45187631:+ chr19:45174576:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Eukaryotic_porin(48%)|Immunoglobulin_V-set_domain(100%) Porin_3(21%)|V-set(100%) 1 6 83 1372 43 ENST00000252487.9 ENST00000358777.10 downstream upstream duplicates(14),mismatches(9) TGACATGGACAACAGTGGCAGTCTCAACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAG___ACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAG|T?GAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAATTCCTCACCTCGTGATCTACCCACCTTGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCTGCCTCAGAGCCTTCAA___CCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCAGGCAGCTCTCTACATCCAGAAGATTCCAGAGCAGCCTCAAAAGAACCAGGACCTTCTCCTGTCAGTCCAGGGTGTCCCAGACACCTTCCAGGACTTCAACTGGTACCTGGGGGAG DMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGS|vetgfhhvgqaglkflts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22712 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44671890:+ chr19:45165545-45187631:+ chr19:45175162:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Eukaryotic_porin(48%)|Immunoglobulin_V-set_domain(100%) Porin_3(21%)|V-set(100%) 5 2 77 1372 110 ENST00000252487.9 ENST00000358777.10 downstream upstream duplicates(13),mismatches(10) ACTGGTGGGTGACATGGACAACAGTGGCAGTCTCAACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAG___ACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAG|TGTCCAGCTCGTGGCCCCTTGGCATTTCCACAAGACGCCAAGATGGAGATTCCCATGGGGACCCAGGGCTGCTTCTCAAAGAGCCTCCTGCTCTCAG___CCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCAGGCAGCTCTCTACATCCAGAAGATTCCAGAGCAGCCTCAAAAGAACCAGGACCTTCTCCTGTCAGTCCAGGGTGTCCCAGACACCTTCCAGGACTTCAACTGGTACCTGGGGGAGGAGAC LVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGS|vssswplgistrrqdgdshgdpglllkeppalslnpgpldaprlpgsslhpedsraaskepgpspvspgcprhlpglqlvpggg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22713 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44671746:+ chr19:45165545-45187631:+ chr19:45175018:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Eukaryotic_porin(48%)|Immunoglobulin_V-set_domain(100%) Porin_3(21%)|V-set(100%) 2 2 82 1372 91 ENST00000252487.9 ENST00000591979.1 downstream upstream duplicates(16),mismatches(10) ACTGGTGGGTGACATGGACAACAGTGGCAGTCTCAACGCTCAGGTCATTCACCAGCTGGGCCCCGGTCTCAGGTCCAAGATGGCCATCCAG___ACCCAGCAGTCGAAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAG|GGAGTATAGGTGGAGCCTCCAGAGCCCATGGACAGGGCATGCTGGGGCTGGGCCAGCCCCAGCGGTGTCTCTAAGGCACCCCTGGGATCCCCACTGAGCTGGCCTACTTCAGACAGCCAGGGCCCACCCCTCTGGCCCCCTTAGTGTCCAGCTCGTGGCCCCTTGGCATTTCCACAAGACGCCAAGATGGAGATTCCCATGGGGACCCAGGGCTGCTTCTCAAAGAGCCTCCTGCTCTCAG___CCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCAGGCAGCTCTCTACA LVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGS|gsiggasrahgqgmlglgqpqrcl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22714 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44676271:+ chr19:45165545-45187631:+ chr19:45179543:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Eukaryotic_porin(48%)| Porin_3(21%)| 0 1 1 1372 308 ENST00000252487.9 ENST00000358777.10 downstream upstream none AAGTTTGTGAACTGGCAGGTGGACGGGGAGTATCGGGGCTCTGACTTCACAGCAGCCGTCACCCTGGGGAACCCAGACGTCCTCGTGGGTTCAG|AAAAGAATAAGGAGCTGCCCAGTACACACCTGCCCACCAACGCTGGGATCCTGGCGGCCACCATCATTGGATCTCTTGCTGCCGGGGCCCTTCTCATCAGCTGCATTGCCTATCTCCTGGTGACAAGGAACTGGAGGGGCCAGAGCCACAG___GATGGCGACCACAGAGAAGCCAGAATTGG KFVNWQVDGEYRGSDFTAAVTLGNPDVLVGS|eKNKELPSTHLPTNAGILAATIIGSLAAGALLISCIAYLLVTRNWRGQSHrMATTEKPEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22715 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3847 TRUE 1448 TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44682567:+ chr19:45165545-45187631:+ chr19:45185839:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Eukaryotic_porin(48%)| Porin_3(21%)| 0 0 0 1372 247 ENST00000252487.9 ENST00000358777.10 downstream upstream mismatches(1) GACGTCCTCGTGGGTTCAG|CCCCTGaCCACACCCCCACACCTGCAGGCGGAGCCAGAGAACCACCAGTACCcG___GACCTGCTAAACCCCGACCCTGCCCCC...AGACAAGGCCCCAGCCCTCCTCTGGGAGCCTCACACCTGAGACCAGCAGGACAAGGCCATTGGGGGCgGTGGGGCCGATGAGGTGGACTCAGCCAAAGAC DVLVGS|apdhtptpaggareppvpgpakprpcp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22716 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2088 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10913877:+ chr19:10982229-11033751:+ chr19:11024553:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(91%),Laminin_N-terminal_(Domain_VI)(100%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(45%) Laminin_B(100%),Laminin_EGF(75%),Laminin_N(100%)|MTS(35%),Methyltransf_11(35%),Methyltransf_25(35%),Methyltransf_9(35%),PRMT5(35%),PrmA(2%) 39 46 72 5235 515 ENST00000313654.14 ENST00000327064.9 downstream upstream duplicates(34),low_entropy(1),mismatches(5) CCTGGATACTATCGGGATCATAAAGGCTTGTATACCGGACGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT___AACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAGGGCCTGCCCATGTCCTCACACTAACAG|GTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCG___GAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGC PGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNr|sw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22717 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2089 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23876407:+ chr18:21269417-21536186:+ chr18:21456371:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10913877:+ chr19:10982229-11033751:+ chr19:11024553:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(85%),Laminin_N-terminal_(Domain_VI)(100%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(45%) Laminin_B(100%),Laminin_EGF(61%),Laminin_N(100%)|MTS(35%),Methyltransf_11(35%),Methyltransf_25(35%),Methyltransf_9(35%),PRMT5(35%),PrmA(2%) 15 10 43 5612 515 ENST00000269217.11 ENST00000327064.9 downstream upstream duplicates(11),mismatches(4) ACCGGGATGCCTCCAGCAGTGAGGCGGTCAGCCTGCAGCATGGGATGGCTGTGGATCTTTGGGGCAGCCCTGGGGCAGTGTCTGGGCTACAGTTCACAGCAGCAAAGGGTGCCATTTCTTCAGCCTCCCGGTCAAAGTCAACTGCAAGCGAGTTATGTGGAGTTTAGACCCAGCCAG___GGTTGTAGCCCTGGATACTATCGGGATCATAAAGGCTTGTATACCGGACGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT|GTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCG___GAAACATGTTTCCTACCATTGGTGACGTCCACCTT MPPAVRRSACSMGWLWIFGAALGQCLGYSSQQQRVPFLQPPGQSQLQASYVEFRPSQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICV|VLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22718 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2090 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10916407:+ chr19:10982229-11033751:+ chr19:11027083:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(91%),Laminin_N-terminal_(Domain_VI)(100%)| Laminin_B(100%),Laminin_EGF(75%),Laminin_N(100%)|MTS(0%),Methyltransf_11(0%),Methyltransf_25(0%),Methyltransf_9(0%),PRMT5(0%) 3 12 35 5235 455 ENST00000313654.14 ENST00000327064.9 downstream upstream duplicates(6),mismatches(2) TGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT___AACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAGGGCCTGCCCATGTCCTCACACTAACAG|GAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTG___GTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTG___GACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCA VPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNr|khvsyhw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22719 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10916696:+ chr19:10982229-11033751:+ chr19:11027372:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(91%),Laminin_N-terminal_(Domain_VI)(100%)| Laminin_B(100%),Laminin_EGF(75%),Laminin_N(100%)| 3 7 25 5235 487 ENST00000313654.14 ENST00000327064.9 downstream upstream duplicates(4),mismatches(1) GGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT___AACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAGGGCCTGCCCATGTCCTCACACTAACAG|GTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTG___GACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAG___GATAGAAATCCC CVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNr|YQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22720 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2091 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23876407:+ chr18:21269417-21536186:+ chr18:21456371:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10919595:+ chr19:10982229-11033751:+ chr19:11030271:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(85%),Laminin_N-terminal_(Domain_VI)(100%)| Laminin_B(100%),Laminin_EGF(61%),Laminin_N(100%)| 4 9 9 5612 691 ENST00000269217.11 ENST00000327064.9 downstream upstream duplicates(7) TACAGTTCACAGCAGCAAAGGGTGCCATTTCTTCAGCCTCCCGGTCAAAGTCAACTGCAAGCGAGTTATGTGGAGTTTAGACCCAGCCAG___GGTTGTAGCCCTGGATACTATCGGGATCATAAAGGCTTGTATACCGGACGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT|GACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAG___GATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCAT___AATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCC YSSQQQRVPFLQPPGQSQLQASYVEFRPSQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICV|DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22721 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23873215:+ chr18:21269417-21536186:+ chr18:21453179:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10913877:+ chr19:10982229-11033751:+ chr19:11024553:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(80%),Laminin_N-terminal_(Domain_VI)(100%)|Ribosomal_protein_L11_methyltransferase_(PrmA)(45%) Laminin_B(100%),Laminin_EGF(53%),Laminin_N(100%)|MTS(35%),Methyltransf_11(35%),Methyltransf_25(35%),Methyltransf_9(35%),PRMT5(35%),PrmA(2%) 0 1 15 4494 515 ENST00000269217.11 ENST00000327064.9 downstream upstream duplicates(2) CCAGGAACCGGGATGCCTCCAGCAGTGAGGCGGTCAGCCTGCAGCATGGGATGGCTGTGGATCTTTGGGGCAGCCCTGGGGCAGTGTCTGGGCTACAGTTCACAGCAGCAAAGGGTGCCATTTCTTCAGCCTCCCGGTCAAAGTCAACTGCAAGCGAGTTATGTGGAGTTTAGACCCAGCCAG|GTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCAT...ACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCG___GAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTG___GTACC MPPAVRRSACSMGWLWIFGAALGQCLGYSSQQQRVPFLQPPGQSQLQASYVEFRPSQ|VLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22722 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10919595:+ chr19:10982229-11033751:+ chr19:11030271:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Laminin_B_(Domain_IV)(100%),Laminin_EGF_domain(91%),Laminin_N-terminal_(Domain_VI)(100%)| Laminin_B(100%),Laminin_EGF(75%),Laminin_N(100%)| 2 1 13 5235 691 ENST00000313654.14 ENST00000327064.9 downstream upstream duplicates(3),mismatches(1) GTGTGTTCCCTGCAATTGCAACGGACATTCAAATCAATGCCAGGATGGCTCAGGCATATGTGTT___AACTGTCAGCACAACACCGCGGGAGAGCACTGTGAACGCTGCCAGGAGGGCTACTATGGCAACGCCGTCCACGGATCCTGCAGGGCCTGCCCATGTCCTCACACTAACAG|GACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAG___GATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCG CVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNr|thltsgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22723 NUSAP1::INO80 ENSG00000137804.14::ENSG00000128908.19 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUSAP1 ENSG00000137804.14 protein_coding + + chr15:41320794-41381050:+ chr15:41365589:+ chr15:41612992-41673248:+ chr15:41657787:+ INO80 ENSG00000128908.19 protein_coding - + chr15:40978880-41116280:- chr15:41034752:+ chr15:41271078-41408478:- chr15:41326950:+ chr15:41370842,chr15:41370843 chr15:41033661,chr15:41033659 NA NA chr15:41663040,chr15:41663041 chr15:41325859,chr15:41325857 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Nucleolar_and_spindle-associated_protein(44%)| NUSAP(39%),Yippee-Mis18(100%)| 83 15 35 756 168 ENST00000414849.6 unknown downstream upstream duplicates(27),low_entropy(5),mismappers(1),mismatches(4),multimappers(4) TCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAATGCTGTTTCCTCAG...GGAAAAAATAAAAGAACTGCAATCACTACTCCAA___ACTTTAAGAAGCTTCATGAAGCTCATTTTAAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACTGAAG___CAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTACTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGGTCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAG|GTTTGTTGGCCGAAGAATAACCCCAAACTTTTTAAGACTGATCTGGAACATGGAATCTGGGTTCAACTTGCATACTCTTCCATTAAAACCTTGAAACATAATTTGTCTTCACTGGAGAACTGCTTCT GKNKRTAITTPNFKKLHEAHFKEMESIDQYIERKKKHFEEHNSMNELKQPINKGGVRTPVPPRGRLSVASTPISQRRSQGRSCGPASQSTLGLKGSLKRSAISAAKTGVr|fvgrritpnflrliwnmesgfnlhtlplkp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22724 ENSG00000285920::INO80 ENSG00000285920.2::ENSG00000128908.19 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285920 ENSG00000285920.2 protein_coding + + chr15:41284007-41380996:+ chr15:41365589:+ chr15:41576205-41673194:+ chr15:41657787:+ INO80 ENSG00000128908.19 protein_coding - + chr15:40978880-41116280:- chr15:41034752:+ chr15:41271078-41408478:- chr15:41326950:+ chr15:41370842,chr15:41370843 chr15:41033661,chr15:41033659 NA NA chr15:41663040,chr15:41663041 chr15:41325859,chr15:41325857 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none Nucleolar_and_spindle-associated_protein(44%)| NUSAP(39%),Yippee-Mis18(100%)| 83 15 35 756 168 ENST00000668616.1 unknown downstream upstream duplicates(27),low_entropy(5),mismappers(1),mismatches(4),multimappers(4) TCTCAGAGCTACTGCAAAAGTTCCTTCTCCACCAGACGAGCACCAAGAAGCTGAGAATGCTGTTTCCTCAG...GGAAAAAATAAAAGAACTGCAATCACTACTCCAA___ACTTTAAGAAGCTTCATGAAGCTCATTTTAAGGAAATGGAGTCCATTGATCAATATATTGAGAGAAAAAAGAAACATTTTGAAGAACACAATTCCATGAATGAACTGAAG___CAGCCCATCAATAAGGGAGGGGTCAGGACTCCAGTACCTCCAAGAGGAAGACTCTCTGTGGCTTCTACTCCCATCAGCCAACGACGCTCGCAAGGCCGGTCTTGTGGCCCTGCAAGTCAGAGTACCTTGGGTCTGAAGGGGTCACTCAAGCGCTCTGCTATCTCTGCAGCTAAAACGGGTGTCAG|GTTTGTTGGCCGAAGAATAACCCCAAACTTTTTAAGACTGATCTGGAACATGGAATCTGGGTTCAACTTGCATACTCTTCCATTAAAACCTTGAAACATAATTTGTCTTCACTGGAGAACTGCTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22725 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2092 TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65053238:+ chr14:65453613-65529370:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(6%) 32 24 76 663 225 ENST00000360689.9 ENST00000246166.3 downstream upstream duplicates(28),mismatches(12) TCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...CTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG___CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 TRUE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22726 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2093 TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65061181:+ chr14:65453613-65529370:+ chr14:65527899:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 19 19 34 663 388 ENST00000673929.1 ENST00000246166.3 downstream upstream duplicates(15),mismatches(4) CCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...GGCTGAGGGCTGTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTTTCTACAGAAGCCAGTCCCAGGTTTTGAGGAGCTTAAGGATGAGACATCGGCAGAGCCTGCAACCGACTAGAGGACCTGGGTCCCGGCAGCTCTTTGCTCACCCATCTCCCCAGTCAGACAAGGTTTATACGTTTCAATACATACTGCATTCTGTGCTACACAAGCCTTAGCCTCAGTGGAGCTGTGGTTCTCTTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 TRUE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22727 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65054575:+ chr14:65453613-65529370:+ chr14:65521293:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(8%) |Prenyltrans(0%) 2 2 51 663 291 ENST00000360689.9 ENST00000246166.3 downstream upstream duplicates(12),mismatches(3) GGTCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...TTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG___CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTTTCTACAGAAGCCAGTCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 TRUE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22728 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65413214:+ chr14:65877310-66210839:+ chr14:65879932:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65053238:+ chr14:65453613-65529370:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(6%) 1 1 35 540 225 ENST00000673929.1 ENST00000246166.3 downstream upstream duplicates(6),mismatches(3) C?CGCGCTCTGCCTCAGTCAGTGGCGCCGAAGGCTCCGTTAAGCGGCGGCGGCGGTTCCTGTTTCCGTTTCTTCCTCTCCGTTCGGTCGGGAGTAGCATCCTCCACTCAGCCACCCTTCCCACTCCCCCATCGTGGGGCAGCTGCGGCTGAGGGCTGTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 FALSE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22729 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65411993:+ chr14:65877310-66210839:+ chr14:65878711:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65053238:+ chr14:65453613-65529370:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(6%) 0 4 2 271 225 ENST00000360689.9 ENST00000246166.3 downstream upstream duplicates(4) CTCCGGTCCTCCCGCTCAGCTGGCGGTCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG...ACTTTCTACAGAAGCCAGTCCCAGGTTTTGAGGAGCTTAAGGATGAGACATCGGCAGAGCCTGCAACCGACTAGAGGACCTGGGTCCCGGCAGCTCTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 FALSE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22730 FUT8::CHURC1-FNTB ENSG00000033170.17::ENSG00000125954.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3850 TRUE 1451 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ CHURC1-FNTB ENSG00000125954.13 protein_coding + + chr14:64914485-65061803:+ chr14:65053238:+ chr14:65381203-65528521:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(7%) 32 24 76 663 225 ENST00000360689.9 ENST00000549987.1 downstream upstream duplicates(28),mismatches(12) TCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...CTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG___CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22731 FUT8::CHURC1-FNTB ENSG00000033170.17::ENSG00000125954.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3850 TRUE 1451 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ CHURC1-FNTB ENSG00000125954.13 protein_coding + + chr14:64914485-65061803:+ chr14:65061181:+ chr14:65381203-65528521:+ chr14:65527899:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 19 18 34 663 388 ENST00000673929.1 ENST00000552941.6 downstream upstream duplicates(15),mismatches(4) CCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...GGCTGAGGGCTGTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTTTCTACAGAAGCCAGTCCCAGGTTTTGAGGAGCTTAAGGATGAGACATCGGCAGAGCCTGCAACCGACTAGAGGACCTGGGTCCCGGCAGCTCTTTGCTCACCCATCTCCCCAGTCAGACAAGGTTTATACGTTTCAATACATACTGCATTCTGTGCTACACAAGCCTTAGCCTCAGTGGAGCTGTGGTTCTCTTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22732 FUT8::CHURC1-FNTB ENSG00000033170.17::ENSG00000125954.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3850 TRUE 1451 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ CHURC1-FNTB ENSG00000125954.13 protein_coding + + chr14:64914485-65061803:+ chr14:65054575:+ chr14:65381203-65528521:+ chr14:65521293:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(8%) |Prenyltrans(0%) 2 2 51 663 291 ENST00000360689.9 ENST00000549987.1 downstream upstream duplicates(12),mismatches(3) GGTCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...TTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG___CAGCCCACTCACCCAGTGTACAACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTTTCTACAGAAGCCAGTCCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22733 FUT8::CHURC1-FNTB ENSG00000033170.17::ENSG00000125954.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3850 TRUE 1451 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65413214:+ chr14:65877310-66210839:+ chr14:65879932:+ CHURC1-FNTB ENSG00000125954.13 protein_coding + + chr14:64914485-65061803:+ chr14:65053238:+ chr14:65381203-65528521:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(7%) 1 1 35 540 225 ENST00000673929.1 ENST00000549987.1 downstream upstream duplicates(6),mismatches(3) C?CGCGCTCTGCCTCAGTCAGTGGCGCCGAAGGCTCCGTTAAGCGGCGGCGGCGGTTCCTGTTTCCGTTTCTTCCTCTCCGTTCGGTCGGGAGTAGCATCCTCCACTCAGCCACCCTTCCCACTCCCCCATCGTGGGGCAGCTGCGGCTGAGGGCTGTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22734 FUT8::CHURC1-FNTB ENSG00000033170.17::ENSG00000125954.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3850 TRUE 1451 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65411993:+ chr14:65877310-66210839:+ chr14:65878711:+ CHURC1-FNTB ENSG00000125954.13 protein_coding + + chr14:64914485-65061803:+ chr14:65053238:+ chr14:65381203-65528521:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Prenyltransferase_and_squalene_oxidase_repeat(20%) |Prenyltrans(7%) 0 4 2 271 225 ENST00000360689.9 ENST00000549987.1 downstream upstream duplicates(4) CTCCGGTCCTCCCGCTCAGCTGGCGGTCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG|GTGACCCTGCCCTTAGCATGAGCCACTGGATGTTCCATCAGCAGGCCCTGCAGGAGTACATCCTGATGTGCTGCCAGTGCCCTGCGGGGGGGCTTCTGGATAAACCTGGCAA___GTCGCGTGATTTCTACCACACCTGCTACTGCCTGAGCGGCCTGTCCATAGCCCAGCACTTCGGCAGtGGAGCCATGTTGCATGATGTGGTCCTGGGTGTGCCCGAAAACGCTCTG...ACTTTCTACAGAAGCCAGTCCCAGGTTTTGAGGAGCTTAAGGATGAGACATCGGCAGAGCCTGCAACCGACTAGAGGACCTGGGTCCCGGCAGCTCTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22735 PDCD6::CCDC127 ENSG00000249915.9::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2094 TRUE 3851 TRUE 1452 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none EF-hand_domain_pair(22%),EF_hand(100%)| EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)| 27 29 72 1602 565 ENST00000618970.4 ENST00000296824.4 downstream downstream duplicates(28),low_entropy(2),mismatches(12) CCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGT MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gWIWSRESQKEVEKEREAYRRRTAAFQQDLEAKYHAMISENRRAVAQLSLELEKEQNRTASYREALISQGRKLVEEKKLLEQERAQVMQEKRQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22736 PDCD6::CCDC127 ENSG00000249915.9::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3851 TRUE 1452 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:216859:- chr5:196983-218268:- chr5:216974:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none EF-hand_domain_pair(22%),EF_hand(100%)| EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)| 10 17 87 1602 396 ENST00000618970.4 ENST00000296824.4 downstream downstream duplicates(26),mismatches(12) TCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTATATCTCCATGAATAACCTAAATGATCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCGGATGGTGGTGATGGAAGCAGGTGGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTC___GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gisp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22737 PDCD6::CCDC127 ENSG00000249915.9::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3851 TRUE 1452 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:271821:+ chr5:271736-315089:+ chr5:271936:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none EF_hand(10%)| EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)| 4 1 52 1260 565 ENST00000618970.4 ENST00000296824.4 downstream downstream duplicates(8),mismatches(5) AGCGGAGTCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|ldlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22738 ENSG00000286001::CCDC127 ENSG00000286001.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3852 TRUE 1453 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:272772:+ chr5:218413-315070:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion high none none EF-hand_5(96%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)| 27 29 72 1602 565 ENST00000651543.1 ENST00000296824.4 downstream downstream duplicates(28),low_entropy(2),mismatches(12) CCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22739 ENSG00000286001::CCDC127 ENSG00000286001.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3852 TRUE 1453 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:272772:+ chr5:218413-315070:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:216859:- chr5:196983-218268:- chr5:216974:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site inversion high none none EF-hand_5(96%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)| 10 17 87 1602 396 ENST00000651543.1 ENST00000296824.4 downstream downstream duplicates(26),mismatches(12) TCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTATATCTCCATGAATAACCTAAATGATCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCGGATGGTGGTGATGGAAGCAGGTGGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTC___GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22740 ENSG00000286001::CCDC127 ENSG00000286001.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3852 TRUE 1453 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:271821:+ chr5:218413-315070:+ chr5:271936:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion high none none EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)| 4 1 52 1260 565 ENST00000651543.1 ENST00000296824.4 downstream downstream duplicates(8),mismatches(5) AGCGGAGTCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22744 ATXN2L::XPO6 ENSG00000168488.19::ENSG00000169180.12 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATXN2L ENSG00000168488.19 protein_coding + + chr16:28822999-28837237:+ chr16:28831072:+ chr16:28834320-28848558:+ chr16:28842393:+ XPO6 ENSG00000169180.12 protein_coding - + chr16:28097976-28211965:- chr16:28180556:+ chr16:28109297-28223286:- chr16:28191877:+ chr16:28831244,chr16:28831240 chr16:28178115,chr16:28178108 NA NA chr16:28842565,chr16:28842561 chr16:28189436,chr16:28189429 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ataxin_2_SM_domain(100%),LsmAD_domain(100%)| LsmAD(100%),SM-ATX(100%)| 41 19 62 612 96 ENST00000336783.9 unknown downstream upstream duplicates(17),low_entropy(1),mismappers(1),mismatches(6),multimappers(1) CCGGGAAGGTCCCCGGGGAGGAGTTCGATGCAGCAGCTCTCGGGGCGGTCGGCCTGGCCTTAGCTCTTTGCCACCTCGTGGCCCTCACCATCTGGACAACAGCAGCCCTGGCCCAGGTTCTGAGGCCCGTGGTATCAATGGAG___GCCCTTCCCGCATGTCCCCAAAGGCACAgCGGCCTCTGAGAGGTGCCAAGACTCTGTCTTCGCCCAGTAATAGGCCTTCTGGAGAAACTTCTGTTCCACCTCCTCCTGCAG|GTGCAGTGGCTCCCGCTTATAATCCCAGCTATTCAGGAGGCTGAGATGGAAGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGCAACATAGCgAGACCCTGTCCCACCCCACCCTAGACGCCCCCACCAAAAAGTCGCAGGCTTCTTATATGAAAGTTCAACAACATTGCTGAAATTAAGATCCACAGTGATGGATTTTCTTTCCTTTGGTCAAGTGGAGGGGTTTCC REGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPA|gavapaynpsysgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22746 PDCD6-AHRR::CCDC127 ENSG00000288622.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3854 TRUE 1454 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)| 20 29 54 1602 565 ENST00000505113.6 ENST00000296824.4 downstream downstream duplicates(25),low_entropy(2),mismatches(10) CTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGTGCAGCCTTTGAGA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gWIWSRESQKEVEKEREAYRRRTAAFQQDLEAKYHAMISENRRAVAQLSLELEKEQNRTASYREALISQGRKLVEEKKLLEQERAQVMQEKRQVQPL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22747 PDCD6-AHRR::CCDC127 ENSG00000288622.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3854 TRUE 1454 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:216859:- chr5:196983-218268:- chr5:216974:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none none EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)| 6 17 66 1602 396 ENST00000505113.6 ENST00000296824.4 downstream downstream duplicates(21),mismatches(8) GCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTATATCTCCATGAATAACCTAAATGATCCCCCAAATTGGAATATCCGGCCTAATTCCAGGGCGGATGGTGGTGATGGAAGCAGGTGGAATTATGCCCTGTTGGTTCCAATGCTGGGATTGGCTGCTTTTC___GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gisp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22748 PDCD6-AHRR::CCDC127 ENSG00000288622.1::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3854 TRUE 1454 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:271821:+ chr5:271785-438406:+ chr5:271936:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)| 3 1 34 1260 565 ENST00000505113.6 ENST00000296824.4 downstream downstream duplicates(6),mismatches(3) GGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|ldlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22749 ERBB2::STARD3 ENSG00000141736.14::ENSG00000131748.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2095 TRUE 3855 TRUE 1455 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39693325:+ chr17:37844167-37886679:+ chr17:37849578:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39657008:+ chr17:37793343-37820454:+ chr17:37813261:+ chr17:39693841,chr17:39693842 chr17:39656954,chr17:39656952 NA NA chr17:37850094,chr17:37850095 chr17:37813207,chr17:37813205 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Cholesterol-capturing_domain(83%),START_domain(100%) |MENTAL(35%),START(100%) 37 22 41 263 3004 ENST00000584601.5 ENST00000336308.10 downstream upstream duplicates(15),mismatches(2) TCGAGGCGATAGGGTTAAGGGAAGGCGGACGCCTGATGGGTTAATGAGCAAACTGAAGTGTTTTCCATGATCTTTTTTGAG___TCGCAATTGAAGTACCACCTCCCGAGGGTGATTGCTTCCCCATGCGGGGTAGAACCTTTGCTGTCCTGTTCACCACTCTACCTCCAGCACAGAATTTGGCTTATG___CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG|ACCAACACAGGCATCCGTAAGAACTTGGAGCAGGAGATCATCCAGTACAACTTTAAAACTTCCTTCTTCGACATCTTT___GTCCTGGCCTTCTTCCGCTTCTCTGGACTGCTCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTGATTGCG___GTCACGACGCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA TRUE Stomach,Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 22750 ERBB2::STARD3 ENSG00000141736.14::ENSG00000131748.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3855 TRUE 1455 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39693325:+ chr17:37844167-37886679:+ chr17:37849578:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39657775:+ chr17:37793343-37820454:+ chr17:37814028:+ chr17:39693841,chr17:39693842 chr17:39656954,chr17:39656952 NA NA chr17:37850094,chr17:37850095 chr17:37813207,chr17:37813205 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Cholesterol-capturing_domain(68%),START_domain(100%) |MENTAL(20%),START(100%) 0 1 17 263 2131 ENST00000584601.5 ENST00000336308.10 downstream upstream duplicates(4),mismatches(1) GAAGTACCACCTCCCGAGGGTGATTGCTTCCCCATGCGGGGTAGAACCTTTGCTGTCCTGTTCACCACTCTACCTCCAGCACAGAATTTGGCTTATG___CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG|GTCCTGGCCTTCTTCCGCTTCTCTGGACTGCTCCTAGGCTATGCCGTGCTGCGGCTCCGGCACTGGTGGGTGATTGCG___GTCACGACGCTGGTGTCCAGTGCATTCCTCATTGTCAAGGTCATCCTCTCTGAG___CTGCTCAGCAAAGGGGCATTTGGCTACCTGCTCCCCATCGTCTCTTTTGTCCTCGCCTGGTTGGAaACCTGGTTCCTTtACTTCAAAGTCCTACCCCAGGAAGCTGAAGAGGAGCGAT___GGTATCTTGCCGCCCAGGTTGCTGTTGCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA TRUE Stomach,Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 22752 FYTTD1::HOXA-AS2 ENSG00000122068.13::ENSG00000253552.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3856 TRUE 1456 FYTTD1 ENSG00000122068.13 protein_coding + + chr3:197737179-197787596:+ chr3:197770244:+ chr3:197464050-197514467:+ chr3:197497115:+ HOXA-AS2 ENSG00000253552.8 lncRNA + + chr7:27107777-27134302:+ chr7:27121919:+ chr7:27147396-27173921:+ chr7:27161538:+ chr3:197773439,chr3:197773440 chr7:27120987,chr7:27120985 NA NA chr3:197500310,chr3:197500311 chr7:27160606,chr7:27160604 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Forty-two-three_protein(50%)| FYTT(63%)| 29 23 15 660 98 ENST00000428738.5 ENST00000669815.1 downstream upstream duplicates(15),mismappers(1),mismatches(1) GTTTTGGTAAGACTAGTCTGAATCaTAGAGGAAGAGTAATGCCTGGAAAGAGACGTCCTAATGGAGTTATCACTGGCCTTGCAGCTAGGAAAACGACTGGAATTCGAAAAGGAATTAGTCCTATGAATCGTCCACCTCTAAGTGACAAG___AATATAGAACAATATTTTCCAGTGTTAAAAAGGAAGGCAAACCTTCTGAGACAAAATGAAGGGCAGAGGAAACCAGTAGCAGTTCTCAAGAGACCTAGCCAGCTAAGCAGAAA|GAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCCTGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGTTAGAAATACAGCAATTTTTCTCATGCCGAAGGAAAGGCAAAATGGTCTAAGAAACTGCAAGAGTGTGATACAAGTTTTCCTCAACAGCGAGCTGGGACTGGCG FGKTSLNhRGRVMPGKRRPNGVITGLAARKTTGIRKGISPMNRPPLSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRk|krkrqdienhafpvgrtddep* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22753 FYTTD1::HOXA-AS2 ENSG00000122068.13::ENSG00000253552.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3856 TRUE 1456 FYTTD1 ENSG00000122068.13 protein_coding + + chr3:197737179-197787596:+ chr3:197768587:+ chr3:197464050-197514467:+ chr3:197495458:+ HOXA-AS2 ENSG00000253552.8 lncRNA + + chr7:27107777-27134302:+ chr7:27121919:+ chr7:27147396-27173921:+ chr7:27161538:+ chr3:197773439,chr3:197773440 chr7:27120987,chr7:27120985 NA NA chr3:197500310,chr3:197500311 chr7:27160606,chr7:27160604 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Forty-two-three_protein(38%)| FYTT(58%)| 2 0 3 705 98 ENST00000428738.5 ENST00000517550.1 downstream upstream duplicates(1) GAATTTTCCAAGACTAAATAGAAGACTCCTCCAGCAAAGTGGTGCCCAGCAATTCAGGATGAGAGTGCGATGGGGAATCCAACAGAATTCTG___GTTTTGGTAAGACTAGTCTGAATCaTAGAGGAAGAGTAATGCCTGGAAAGAGACGTCCTAATGGAGTTATCACTGGCCTTGCAGCTAGGAAAACGACTGGAATTCGAAAAGGAATTAGTCCTATGAATCGTCCACCTCTAAGTGACAAG|GAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATG...TGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAG___GCCGCGGTTGCCAGGAACCGTGGAGGGCCAACTCCTCCCAACCGCCCTGGTGCAAAGTCC MRVRWGIQQNSGFGKTSLNhRGRVMPGKRRPNGVITGLAARKTTGIRKGISPMNRPPLSDK|eketprhrkprfsrrknr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22754 FYTTD1::HOXA-AS2 ENSG00000122068.13::ENSG00000253552.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3856 TRUE 1456 FYTTD1 ENSG00000122068.13 protein_coding + + chr3:197737179-197787596:+ chr3:197770244:+ chr3:197464050-197514467:+ chr3:197497115:+ HOXA-AS2 ENSG00000253552.8 lncRNA + + chr7:27107777-27134302:+ chr7:27123460:+ chr7:27147396-27173921:+ chr7:27163079:+ chr3:197773439,chr3:197773440 chr7:27120987,chr7:27120985 NA NA chr3:197500310,chr3:197500311 chr7:27160606,chr7:27160604 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Forty-two-three_protein(50%)| FYTT(63%)| 2 1 1 660 19 ENST00000428738.5 ENST00000517550.1 downstream upstream duplicates(2) GAGACGTCCTAATGGAGTTATCACTGGCCTTGCAGCTAGGAAAACGACTGGAATTCGAAAAGGAATTAGTCCTATGAATCGTCCACCTCTAAGTGACAAG___AATATAGAACAATATTTTCCAGTGTTAAAAAGGAAGGCAAACCTTCTGAGACAAAATGAAGGGCAGAGGAAACCAGTAGCAGTTCTCAAGAGACCTAGCCAGCTAAGCAGAAA|CAAATGGTCACCGAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGA...GACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAGACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGTAACCTCTTACCCCAGCCTGCCCCAAACCAGCCCTCCGCTGTCTGTCTGCCTTCACGCAATTCTG RRPNGVITGLAARKTTGIRKGISPMNRPPLSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRn|kwspsrqsafwewemmgk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22755 FYTTD1::HOXA-AS2 ENSG00000122068.13::ENSG00000253552.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3856 TRUE 1456 FYTTD1 ENSG00000122068.13 protein_coding + + chr3:197737179-197787596:+ chr3:197770244:+ chr3:197464050-197514467:+ chr3:197497115:+ HOXA-AS2 ENSG00000253552.8 lncRNA + + chr7:27107777-27134302:+ chr7:27134081:+ chr7:27147396-27173921:+ chr7:27173700:+ chr3:197773439,chr3:197773440 chr7:27120987,chr7:27120985 NA NA chr3:197500310,chr3:197500311 chr7:27160606,chr7:27160604 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Forty-two-three_protein(50%)| FYTT(63%)| 0 0 0 660 42 ENST00000428738.5 ENST00000521159.5 downstream upstream mismatches(1) GCCAGCTAAGCAGAAA|AGCGAGAGTCCCCCAGACTGTTCTCTATCTGATGCATGTCTCTgGAGCTGAACAGTGGAATGGCAGAATTTCAAAACGCCTGATG...TTTACCAGCCATTTGACCAATTAATTCTTTGGGGATAATTTTCTTGTAGTAGTTTAAAATAATGCACACAACGCAGGGATGAGGACTGATATTCATATTGG QLSRk|arvpqtvlylmhvsgaeqwngriskrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22756 TKT::DCP1A ENSG00000163931.17::ENSG00000272886.6 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2096 FALSE NA FALSE NA TKT ENSG00000163931.17 protein_coding - - chr3:53224712-53256052:- chr3:53255836:- chr3:53258728-53290068:- chr3:53289852:- DCP1A ENSG00000272886.6 protein_coding - - chr3:53283429-53347586:- chr3:53312379:- chr3:53317449-53381613:- chr3:53346409:- chr3:53245225,chr3:53245230 chr3:53316779,chr3:53316778 NA NA chr3:53279241,chr3:53279246 chr3:53350806,chr3:53350805 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Transketolase__thiamine_diphosphate_binding_domain(7%)|mRNA-decapping_enzyme_C-terminus(100%) Transketolase_N(0%)|mRNA_decap_C(100%) 20 11 34 2221 80 ENST00000462138.6 ENST00000610213.6 upstream downstream duplicates(14),inconsistently_clipped(1),mismatches(3) CCTGTCGCCGCGGGAGCAGCCGCTATCTCTGTGTGTCCGCGTGTGCGCCCGGTCCCCGCCTGCCGCACCATGGAGAGCTACCACAAGCCTGACCAGCAGAAGCTGCAGGCCTTGAAGGACACGGCCAACCGCCTACGTATCAGCTCCATCCAGGCCACCACTGCGGCGGGCTCTGG|TGTGGTAGAAGAGGAGACACGGCGATCCCAGCAAGCTGCTCGGGACAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCACAGGCCCATCGACATCCTGGAGATGCTGAGCAGAGCCAAGGATGAGTATGAGAGG___AATCAGATGGGTGACTCAAATATCTCCAGCCCTGGGTTACAGCCAAGCACTCAGCTCTCCAATCTGGGAAGC...___TCTGCTCCATCTGGACACAAGCA MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSg|VVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISSPGLQPSTQLSNLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22757 WDR45B::RAB40B ENSG00000141580.16::ENSG00000141542.11 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2097 TRUE 3857 TRUE 1457 WDR45B ENSG00000141580.16 protein_coding - - chr17:82614562-82648553:- chr17:82630921:- chr17:80572438-80606429:- chr17:80588797:- RAB40B ENSG00000141542.11 protein_coding - - chr17:82654973-82698698:- chr17:82664556:- chr17:80612849-80656574:- chr17:80622432:- chr17:82630779,chr17:82630784 chr17:82689098,chr17:82689100 NA NA chr17:80588655,chr17:80588660 chr17:80646974,chr17:80646976 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Ras_family(79%),SOCS_box(100%) |Arf(14%),DNA_gyraseA_C(100%),Ras(15%),Roc(15%),SOCS_box(100%) 19 15 27 425 91 ENST00000392325.9 ENST00000571995.6 upstream downstream duplicates(12),mismatches(2) GACCAGGCCGCCGTCCCCAGCGAGAGGCATGCAGCGCTGAGGAGCGGCGACCCAGCACGGCGGCGCCATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTCTACGCCGGCTTCAACCAGGACCACG___GATGCTTTGCGTGTGGGATGGAAAATGGATTCCGAGTCTATAACACTGATCCACTAAAAGAAAAAGAGAAACAAG___AATTTCTAGAAGGAGGAGTTGGCCATGTTGAAATGTTATTTCGCTGCAACTATTTAGCTTTAGTTGGTGGTGGAAAAAAGCCGAAATACCCTCCCAACAAAG|GCATCGACTACAAGACGACCACCATCCTGCTGGACGGGCGGCGGGTGAAGCTGCAGCTCTG___GGATACTTCAGGCCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCCCGGGGCGCACAG___GGTGTGATCCTGGTCTATGACATTGCGAACCGCTGGTCTTTTGACGGCATTGATCGATGGATTAAGGAGATCGATGAG___CATGCCCCCGGAGTCCCCAAGATCCTGGT MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNK|gIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVPKIL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22758 WDR45B::RAB40B ENSG00000141580.16::ENSG00000141542.11 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2098 TRUE 3857 TRUE 1457 WDR45B ENSG00000141580.16 protein_coding - - chr17:82614562-82648553:- chr17:82643949:- chr17:80572438-80606429:- chr17:80601825:- RAB40B ENSG00000141542.11 protein_coding - - chr17:82654973-82698698:- chr17:82664556:- chr17:80612849-80656574:- chr17:80622432:- chr17:82630779,chr17:82630784 chr17:82689098,chr17:82689100 NA NA chr17:80588655,chr17:80588660 chr17:80646974,chr17:80646976 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Ras_family(79%),SOCS_box(100%) |Arf(14%),DNA_gyraseA_C(100%),Ras(15%),Roc(15%),SOCS_box(100%) 9 14 19 436 91 ENST00000392325.9 ENST00000571995.6 upstream downstream duplicates(12),mismatches(2) CCTCAGCGCCGGCCCGAAGGGACCAGGCCGCCGTCCCCAGCGAGAGGCATGCAGCGCTGAGGAGCGGCGACCCAGCACGGCGGCGCCATGAACCTCCTGCCGTGTAACCCTCACGGCAACGGGCTGCTCTACGCCGGCTTCAACCAGGACCACG___GATGCTTTGCGTGTGGGATGGAAAATGGATTCCGAGTCTATAACACTGATCCACTAAAAGAAAAAGAGAAACAAG|GCATCGACTACAAGACGACCACCATCCTGCTGGACGGGCGGCGGGTGAAGCTGCAGCTCTG___GGATACTTCAGGCCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCCCGGGGCGCACAG___GGTGTGATCCTGGTCTATGACATTGCGAACCGCTGGTCTTTTGACGGCATTGATCGATGGATTAAGGAGATCGATGAG___CATGCCCCC MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQ|gIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22759 SYMPK::PRKD2 ENSG00000125755.19::ENSG00000105287.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3858 TRUE 1458 SYMPK ENSG00000125755.19 protein_coding - - chr19:45815410-45863194:- chr19:45854175:- chr19:46318668-46366452:- chr19:46357433:- PRKD2 ENSG00000105287.13 protein_coding - - chr19:46674275-46717127:- chr19:46711038:- chr19:47177532-47220384:- chr19:47214295:- chr19:45854024,chr19:45854026 chr19:46711774,chr19:46711773 NA NA chr19:46357282,chr19:46357284 chr19:47215031,chr19:47215030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) |C1_1(100%),Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 28 17 13 360 116 ENST00000245934.12 ENST00000433867.5 upstream downstream duplicates(16),mismatches(5) GGAAGAGGCACTGCTGAGGGGGCGCGAGGGGAACGGAGGCCAGAGCTGCG___CTGACAGCAGCCATGGCGAGCGGCAGTGGAGACAGCGTCACCCGTCGGAGCGTGGCATCACAGTTTTTCACTCAAGAGGAGGGGCCGGGCATCGATGGCATGACCACCTCAGAGAGG___GTGGTGGATCTTCTGAACCAGGCGGCGCTGATCACCAATGACTCAAAGATCACAGTGCTCAAACAG|CCTCGGCCACCTTCGAGGACTTCCAGATCCGCCCGCACGCCCTCACGGTGCACTCCTATCGGGCGCCTGCCTTCTGTGATCACTGCGGGGAGATGCTCTTCGGCCTAGTGCGCCAGGGCCTCAAGTGCGATG___GCTGCGGGCTGAACTACCACAAGCGCTGTGCCTTCAGCATCCCCAACAACTGTAGTGGGGCCCGCAAACGGCGCCTGTCATCCACGTCTC MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQ|prppsrtsrsartpsrctpigrlpsvitagrcssa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-320e chr19:46709282-46709354:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase D2 CAMK PKD Q9BZL6 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22760 SYMPK::PRKD2 ENSG00000125755.19::ENSG00000105287.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3858 TRUE 1458 SYMPK ENSG00000125755.19 protein_coding - - chr19:45815410-45863194:- chr19:45854391:- chr19:46318668-46366452:- chr19:46357649:- PRKD2 ENSG00000105287.13 protein_coding - - chr19:46674275-46717127:- chr19:46711038:- chr19:47177532-47220384:- chr19:47214295:- chr19:45854024,chr19:45854026 chr19:46711774,chr19:46711773 NA NA chr19:46357282,chr19:46357284 chr19:47215031,chr19:47215030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Protein_kinase_domain(100%) |C1_1(100%),Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 1 6 249 116 ENST00000245934.12 ENST00000433867.5 upstream downstream duplicates(3),mismatches(2) GCGGCGGCGGCGGCGGAGTGTAGGAAGAGGCACTGCTGAGGGGGCGCGAGGGGAACGGAGGCCAGAGCTGCG___CTGACAGCAGCCATGGCGAGCGGCAGTGGAGACAGCGTCACCCGTCGGAGCGTGGCATCACAGTTTTTCACTCAAGAGGAGGGGCCGGGCATCGAgGGCATGACCACCTCAGAGAGG|CCTCGGCCACCTTCGAGGACTTCCAGATCCGCCCGCACGCCCTCACGGTGCACTCCTATCGGGCGCCTGCCTTCTGTGATCACTGCGGGGAGATGCTCTTCGGCCTAGTGCGCCAGGGCCTCAAGTGCGATG___GCTGCGGGCTGAACTACCACAAGCGCTGTGCCTTCAGCATCCCCAACAACTGTAGTGGGGCCCGCAAACGGCGCCTGTCATCCACGTCTCTG MASGSGDSVTRRSVASQFFTQEEGPGIeGMTTSER|prppsrtsrsartpsrctpigrlpsvitagrcssa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-320e chr19:46709282-46709354:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase D2 CAMK PKD Q9BZL6 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22761 SREBF2::RANGAP1 ENSG00000198911.13::ENSG00000100401.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41880992:+ chr22:42229109-42303310:+ chr22:42276996:+ RANGAP1 ENSG00000100401.21 protein_coding - + chr22:41244779-41286187:- chr22:41260189:+ chr22:41640783-41682191:- chr22:41656193:+ chr22:41883633,chr22:41883633 chr22:41258803,chr22:41258800 NA NA chr22:42279637,chr22:42279637 chr22:41654807,chr22:41654804 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Helix-loop-helix_DNA-binding_domain(100%)| HLH(100%)| 7 6 40 566 48 ENST00000361204.9 unknown downstream upstream duplicates(11),mismappers(2),mismatches(8) TCTGGATCTCGCCAGA___GGAGATTTTGCAGCTGCTGCCGGCAACCTACAAACCTGCCTGGCAGTTTTGGGCCGGGCACTGCCCACCTCCCGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTGATCCGCTACAGCCTGCAGAAGCTACGCCTGGTGCGCTGGCTGCTCAAGAAAGTCTTCCAGTGCCGGCGGGCCACGCCAGCCACTGAGGCAGGCTTTGAAGACGAAGCTAAGACCAGCGCCCGGGATGCGGCTCTGGCCTATCACCGGCTGCACCAGCTGCACATCACAG|ACCCCTGAATTCTATCCACATACTGGGGGGGATTAAGAACCCCCATTCTAAGCCCACCAGAGGACACCTATGAAGGCTCAACACAACCACAGCGCACCCCCTCCTCCCAGTGCACTGAGGACAGCAGGCTGACGGCAGGGAGGGATCCAAGGATGGCAGTGAGGCCCCCACCAGCTCCAGAGGAGGCAGCAGGAGCTCCCCTGCAGCCAGGGGTGCAGGGAGACACAAGGCAGATCTCTGCGATGTTCACTTGGCACTGAAGCAGG LDLARGDFAAAAGNLQTCLAVLGRALPTSRLDLACSLSWNVIRYSLQKLRLVRWLLKKVFQCRRATPATEAGFEDEAKTSARDAALAYHRLHQLHIT|dp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22767 CCNC::ASCC3 ENSG00000112237.13::ENSG00000112249.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCNC ENSG00000112237.13 protein_coding - - chr6:99542387-99568825:- chr6:99549508:- chr6:99990263-100016701:- chr6:99997384:- ASCC3 ENSG00000112249.14 protein_coding - + chr6:100508194-100881372:- chr6:100687388:+ chr6:100956070-101329248:- chr6:101135264:+ chr6:99549078,chr6:99549082 chr6:100677395,chr6:100677391 NA NA chr6:99996954,chr6:99996958 chr6:101125271,chr6:101125267 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Cyclin__N-terminal_domain(100%)| Cyclin_N(100%)| 4 16 24 618 64 ENST00000520429.6 unknown upstream upstream duplicates(8),low_entropy(1),mismappers(11) GCTTGATAGTGTATCATCCTTATAGACCTTTGCTCCAGTATGTGCAGGACATGGGCCAAGAAGACATGTTGCTTCCCCTTGCATG___GAGGATAGTGAATGATACCTACAGAACGGATCTTTGCCTACTGTATCCTCCTTTCATGATAGCTTTAG|TGTCTCGCTCTGTCGCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCCCACTGCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAG___TTTACCTGGAAATGCTTTAGGAAGAAAAAAGAGACATGACCTAGCAGAAGAAATCAACAGCAGTTCAAGGGAAAGTATCCATATGTTCAAACAGAGAAGAGAGCAAATTCATATGGCGGTCAATACAGACTTTTTGTAGAAATGGAC LIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIAL|vsrsvarlecsgvisahcnlhlpgsrdspasasrvagttvyleml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin C 2 T-ALL leukaemia_lymphoma TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 22771 STX8::USP43 ENSG00000170310.15::ENSG00000154914.17 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2099 FALSE NA FALSE NA STX8 ENSG00000170310.15 protein_coding - - chr17:9250471-9576591:- chr17:9568371:- chr17:9153788-9479908:- chr17:9471688:- USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9727954:+ chr17:9548015-9633004:+ chr17:9631271:+ chr17:9566308,chr17:9566315 chr17:9716942,chr17:9716935 NA NA chr17:9469625,chr17:9469632 chr17:9620259,chr17:9620252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 10 9 10 102 35 ENST00000575858.5 ENST00000285199.12 upstream upstream duplicates(7),mismatches(1) ATGGCACCGGACCCCTG___GTTCTCCACATACGATTCTACTTGTCAAATTGCCCAAGAAATTGCTGAGAAAATTCAACAACGAAATCAATATGAAcGAAAAGGTGAAAAGGCACCAAAG|GAGGGTTGGAGCCCAGGCGTTTGGTACGGGGCGTGAAAGGCAGAAGCATTAGCATGAAGGCACCCACCACTTCCCGAGCCAAGCAGGGACCATTCAAGACCATGCCTCTGCGGTGGTCCTTTGGATCCAAGGAGAAACCACCAGGTGCCTCCGTCGAGTTGGTGGAGTACTTGGAATCCAGACGAAGACCTCGGTCCACGAGCCAGTCC MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPK|egwspgvwyga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22774 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2101 TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70083507:- chr2:70187236-70330352:- chr2:70310639:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Putative_treble-clef__zinc-finger__Zn-binding(100%) |zf-tcix(100%) 6 7 14 44 60 ENST00000631110.2 ENST00000264434.7 upstream downstream duplicates(6),low_entropy(1),mismatches(4) GGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTG___ACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAG|ACTATCAAGATCTCCACTTAGGGAAGTGGGAATCTTATTTGCGGAACATTGGGCAGAAGCTTTGCCATTGGCTGGTGGAGAAGGAGGAGGCAGAATGTCTGCATTGTTACACCATACAGCTCAAACTTCAGAAGATTTTGGGTTAAGCAGTTATCATTAGTCTGCAAATGATCGTGTTTTCACCTGATCATTAGAAACTAATGAAACACCTTTTAAGTCTTATGAATTCAGGTTACACTGTTTTCCAGATGCCTTGGCAGCTGGTACAG___GGCCTCTGAAAAATGGAACCAAATTCTCTGAGGACTAAAGTCCCAGCTTTCTTATCTGATTTGGGGAAGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22775 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70077301:- chr2:70187236-70330352:- chr2:70304433:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Putative_treble-clef__zinc-finger__Zn-binding(100%) |zf-tcix(100%) 2 0 14 4 60 ENST00000630759.2 ENST00000264434.7 upstream downstream duplicates(2),mismatches(2) TATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCC...CTCGCCTCCTCTCAGTGACCACAGGTTGGTTGAGGGGTTTAACAAGGCTAAGAAG___TACTTATCCTGTATTACATGAAGGAAATGAAATAAAAAGACTGCAGCCCCACTCCCAGCTACTCAGTGAGGTGGTAGCTAG|ACTATCAAGATCTCCACTTAGGGAAGTGGGAATCTTATTTGCGGAACATTGGGCAGAAGCTTTGCCATTGGCTGGTGGAGAAGGAGGAGGCAGAATGTCTGCATTGTTACACCATACAGCTCAAACTTCAGAAGATTTTGGGTTAAGCAGTTATCATTAGTCTGCAAATGATCGTGTTTTCACCTGATCATTAGAAACTAATGAAACACCTTTTAAGTCTTATGAATTCg unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22776 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2102 TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70083538:- chr2:70187236-70330352:- chr2:70310670:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Putative_treble-clef__zinc-finger__Zn-binding(100%) |zf-tcix(100%) 3 3 10 45 60 ENST00000688473.1 ENST00000264434.7 upstream downstream duplicates(1),mismatches(2) GCAGTTCACCGTATTCTATCTTTAATTTTTACCATGGTCCTCTGAGGTAGGTGTTCTTATCTCTCTCTCTCTCTCTCTCTTTTAAACAGAGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTG___ACCTGCATTATCTTGTGGATACCTGAGTGAATTCCACACCACCCATTTTATAGATGAAACCACTGAGACATGGAGCAATTGACTGAGTAGTCACTGCCCCACCCCTGCCTGGAGCCTCACACATGACTCGCCTCCTCTCAGTGACCACAG|ACTATCAAGATCTCCACTTAGGGAAGTGGGAATCTTATTTGCGGAACATTGGGCAGAAGCTTTGCCATTGGCTGGTGGAGAAGGAGGAGGCAGAATGTCTGCATTGTTACACCATACAGCTCAAACTTCAGAAGATTTTGGGTTAAGCAGTTATCATTAGTCTGCAAATGATCGTGTTTTCACCTGATCATTAGAAACTAATGAAACACCTTTTAAGTCTTATGAATTCgGGTTACACTGTTTTCCAGATGCCTTGGCAGCTGGTACAG___GGCCTCTGAAAAATGGAACCAAATTCTCTGAGGACTAAAGTCCCAGCTTTCTTATCTGATTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22777 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70085547:- chr2:70187236-70330352:- chr2:70312679:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Putative_treble-clef__zinc-finger__Zn-binding(100%) |zf-tcix(100%) 4 1 5 93 60 ENST00000423402.5 ENST00000264434.7 upstream downstream duplicates(3),mismatches(3) TTCCTTTCCGTGCATAAGAAGCCGAATG___AGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTG|ACTATCAAGATCTCCACTTAGGGAAGTGGGAATCTTATTTGCGGAACATTGGGCAGAAGCTTTGCCATTGGCTGGTGGAGAAGGAGGAGGCAGAATGTCTGCATTGTTACACCATACAGCTCAAACTTCAGAAGATTTTGGGTTAAGCAGTTATCATTAGTCTGCAAATGATCG...TTCAGGTTACACTGTTTTCCAGATGCCTTGGCAGCTGGTACAG___GGCCTCTGAAAAATGGAACCAAATTCTCTGAGGACTAAAGTCCCAGCTTTCTTATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22778 ZC3H7A::BCAR4 ENSG00000122299.12::ENSG00000262117.5 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2103 TRUE 3863 TRUE 1460 ZC3H7A ENSG00000122299.12 protein_coding - - chr16:11750586-11797258:- chr16:11797124:- chr16:11844442-11891114:- chr16:11890980:- BCAR4 ENSG00000262117.5 lncRNA - - chr16:11819829-11828845:- chr16:11820297:- chr16:11913686-11922702:- chr16:11914154:- chr16:11785365,chr16:11785368 chr16:11826483,chr16:11826483 NA NA chr16:11879221,chr16:11879224 chr16:11920340,chr16:11920340 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 19 0 99 52 ENST00000355758.9 ENST00000571158.5 upstream downstream duplicates(2),mismatches(2) GCCACCGCTGCCCGCCTGCCGCCGCCCGCCTCCGCCTGCCTTCTGCCGCCGGCCGGCGCGTCGTCCCCACAG|CAAAAAATCACCATGTACCAACCTATCCAAACTTATCCATGGATGAATCTATCCAGAAGACGGGAGTTCCGATGCTTGTCTTGCTCTGAATGTCTGCTTGTCACCTGCTTAGGGTTATCGACTGTGATTCTGGGACTCATTGTTGTTCTACAGGACCCCTCTGACTCTGTGGTTTTCTCTACTGGATTAACAATGATAGCCATAGGTGCTTTTTTTGTTGTCCTCACTGGAGTGACAGCCCTGTGTACGGTTACAGTCGACGAGAACTTGCAGAAAACCACGAGGCTAAGACTAGGAGTGATACGAAAAAGCGGAAGTCTCCAAGGAACTACAGAGCCTTCCATGACTCACTCAATAATCGCTAGCACCTCGCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22779 ZC3H7A::BCAR4 ENSG00000122299.12::ENSG00000262117.5 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3863 TRUE 1460 ZC3H7A ENSG00000122299.12 protein_coding - - chr16:11750586-11797258:- chr16:11797124:- chr16:11844442-11891114:- chr16:11890980:- BCAR4 ENSG00000262117.5 lncRNA - - chr16:11819829-11828845:- chr16:11821755:- chr16:11913686-11922702:- chr16:11915612:- chr16:11785365,chr16:11785368 chr16:11826483,chr16:11826483 NA NA chr16:11879221,chr16:11879224 chr16:11920340,chr16:11920340 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 0 5 0 99 18 ENST00000355758.9 ENST00000571158.5 upstream downstream duplicates(3) CACCGCTGCCCGCCTGCCGCCGCCCGCCTCCGCCTGCCTTCTGCCGCCGGCCGGCGCGTCGTCCCCACAG|GGTCTTGTCCTGTCACTCTGGCTGGAATACAATGGCGTAATCATAGCTCACTGCGGCC...TCCTGCTTCAGCTTCCCAAGTATCTGGGACTACAG___CAAAAAATCACCATGTACCAACCTATCCAAACTTATCCATGGATGAATCTATCCAGAAGACGGGAGTTCCGATGCTTGTCTTGCTCTGAATGTCTGCTTGTCACCTGCTTAGGGTTATCGACTGTGATTCTGGGACTCATTGTTGTTCTACAGGACCCCTCTGACTCTGTGGTTTTCTCTACTGGATTAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22780 ZC3H7A::BCAR4 ENSG00000122299.12::ENSG00000262117.5 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3863 TRUE 1460 ZC3H7A ENSG00000122299.12 protein_coding - - chr16:11750586-11797258:- chr16:11796219:- chr16:11844442-11891114:- chr16:11890075:- BCAR4 ENSG00000262117.5 lncRNA - - chr16:11819829-11828845:- chr16:11820297:- chr16:11913686-11922702:- chr16:11914154:- chr16:11785365,chr16:11785368 chr16:11826483,chr16:11826483 NA NA chr16:11879221,chr16:11879224 chr16:11920340,chr16:11920340 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication medium none none none 0 2 2 122 52 ENST00000572781.5 ENST00000571158.5 upstream downstream duplicates(1) ACTGACCCCCCGCCGTTTGGGACGATGGAGCCCACGAAATGGGGCCAGTTTCAGTTGCGGTCCCAGCTGTGAAACGTACATCTGATTTTAAAAACTTCGGATGAGAAAGAAAGTAAAAGATGTCATTG|CAAAAAATCACCATGTACCAACCTATCCAAACTTAT...GAATCTATCCAGAAGACGGGAGTTCCGATGCTTGTCTTGCTCTGAATGTCTGCTTGTCACCTGCTTAGGGTTATCGACTGTGATTCTGGGACTCATTGTTGTTCTACAGGACCCCTCTGACTCTGTGGTTTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22781 TTC39C::CABLES1 ENSG00000168234.13::ENSG00000134508.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3864 TRUE 1461 TTC39C ENSG00000168234.13 protein_coding + + chr18:23992773-24135610:+ chr18:24083081:+ chr18:21572737-21715574:+ chr18:21663045:+ CABLES1 ENSG00000134508.13 protein_coding + + chr18:23134564-23260470:+ chr18:23252960:+ chr18:20714528-20840434:+ chr18:20832924:+ chr18:24104930,chr18:24104928 chr18:23246170,chr18:23246165 NA NA chr18:21684894,chr18:21684892 chr18:20826134,chr18:20826129 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site duplication high none Iml2/Tetratricopeptide_repeat_protein_39(62%)|Cyclin__N-terminal_domain(100%) DUF3808(59%)|Cyclin_N(100%) 12 1 6 47 180 ENST00000304621.10 ENST00000256925.12 downstream upstream duplicates(4),mismatches(2) TGTCTGAGGAGTCTCTGAACAGACTGAAAG___ATTAGCTCTGCTCTGGTATCATACTGTAGTCCGCCCGTTTTTTGCCTTGGATGGCAGTGATAACAAGGCAGGCCTGGATGAAGCTAAGGAAATTCTCCTTAAAAAAGAAGCTGCTTATCCAAATTCTTCCCTCTTTATGTTTTTCAAGGGACGGATACAACGACTAGAG|ACAACAGTGATTGACTACGTGAAGCCCTCGGATCTCAAGAAGGACATGAACGAGACCTTCAAGGAGAAGTTTCCTCACATTAAGCTGACACTCAGCAAAATTAGGAG___TCTGAAACGAGAGATGCGGAAGCTTGCGCAGGAGGACTGTGGCCTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 21595002 FALSE 20837191 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22782 TTC39C::CABLES1 ENSG00000168234.13::ENSG00000134508.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3864 TRUE 1461 TTC39C ENSG00000168234.13 protein_coding + + chr18:23992773-24135610:+ chr18:24069271:+ chr18:21572737-21715574:+ chr18:21649235:+ CABLES1 ENSG00000134508.13 protein_coding + + chr18:23134564-23260470:+ chr18:23252960:+ chr18:20714528-20840434:+ chr18:20832924:+ chr18:24104930,chr18:24104928 chr18:23246170,chr18:23246165 NA NA chr18:21684894,chr18:21684892 chr18:20826134,chr18:20826129 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Iml2/Tetratricopeptide_repeat_protein_39(25%)|Cyclin__N-terminal_domain(100%) DUF3808(47%)|Cyclin_N(100%) 1 0 0 47 180 ENST00000304621.10 ENST00000256925.12 downstream upstream duplicates(1) CCACTAATGAGTTTTGGAGCCAGCTTTGTCAGTTTTTTG___AATGCCATGATGACATTTGAGGAAGAAAAAATGCAGTTGGCATGTGATGACTTAAAAACCAC...TCGGCTTCAGAGGCAGATAATCATAGCTGACTGCCAGGTTTACCTGGCTGTGCTTTCATTTGTAAAACAAGAATTGTtAG|ACAACAGTGATTGACTACGTG RLQRQIIIADCQVYLAVLSFVKQELl|dnsd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 21595002 FALSE 20837191 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22783 EHMT1::EXD3 ENSG00000181090.21::ENSG00000187609.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3865 TRUE 1462 EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137762820:+ chr9:140513444-140764468:+ chr9:140657272:+ EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137395404:- chr9:140201348-140317663:- chr9:140289856:- chr9:137771207,chr9:137771198,chr9:137771254,chr9:137771252,chr9:137771241,chr9:137771319 chr9:137402045,chr9:137398993,chr9:137398993,chr9:137398995,chr9:137398995,chr9:137402024 NA NA chr9:140665659,chr9:140665650,chr9:140665706,chr9:140665704,chr9:140665693,chr9:140665771 chr9:140296497,chr9:140293445,chr9:140293445,chr9:140293447,chr9:140293447,chr9:140296476 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(100%) |DNA_pol_A_exo1(100%),Mut7-C(100%) 6 5 8 161 51 ENST00000460843.6 ENST00000340951.9 downstream downstream duplicates(3) ACATGGAAGTTTCTCTGGACTCCCTGGATCTCCGAGTCAAAGGAATTCTGTCTTCACAAGCAGAAG___GGTTGGCCAACGGTCCAGATGTGCTGGAGACAGACGGCCTCCAGGAAGTGCCTCTCTGCAGCTGCCGGATGGAAACACCGAAGAGTCGAGAGATCACCACACTGGCCAACAACCAGTGCATGGCTACAGAGAGCGTGGACCATGAA|ATCCTCGTTCCTAGCTGCCTGCCAGCGTCCTCGGCCCGGCCCTGAGGATGGACCCAGGAGATCCCGCTGGTGACCCTGCCGCTGGCGAGCGCCACCGCATGG___GCCaGGACCCCCTCCTGCTCCTGCAGGCCCTGCAGgCCCTGTGGTCCACGCGGGAGCGGAAGCAG MEVSLDSLDLRVKGILSSQAEGLANGPDVLETDGLQEVPLCSCRMETPKSREITTLANNQCMATESVDHE|ilvpsclpassarp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22784 EHMT1::EXD3 ENSG00000181090.21::ENSG00000187609.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3865 TRUE 1462 EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137758011:+ chr9:140513444-140764468:+ chr9:140652463:+ EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137395404:- chr9:140201348-140317663:- chr9:140289856:- chr9:137771207,chr9:137771198,chr9:137771254,chr9:137771252,chr9:137771241,chr9:137771319 chr9:137402045,chr9:137398993,chr9:137398993,chr9:137398995,chr9:137398995,chr9:137402024 NA NA chr9:140665659,chr9:140665650,chr9:140665706,chr9:140665704,chr9:140665693,chr9:140665771 chr9:140296497,chr9:140293445,chr9:140293445,chr9:140293447,chr9:140293447,chr9:140296476 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion medium none |3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(100%) |DNA_pol_A_exo1(100%),Mut7-C(100%) 0 1 1 210 51 ENST00000460843.6 ENST00000340951.9 downstream downstream none CCTGGATCAAGCCAGCCAGGAAAAGGAGGCGGAGAAGTAGAAAGAAGCCCAGCGGTGCCCTCG___GTTCTGAGTCGTATAAGTCATCTGCAGGAAGCGCTGAG...CTCTGGACTCCCTGGATCTCCGAGTCAAAGGAATTCTGTCTTCACAAGCAGAAG|ATCCTCGTTCCTAGCTGCCTGCCAGCGTCCTCGGCCCGGCCCTGAGGATGGACCCAGGAGATCCCGCTGGTGACCCTGCCGCTGGCGAGCGCCACCGCATGGGTGAGTCTGAGCCTGATGGTGCCGAG...CTGCAGgCCCTGTGGTCCACGCGGGAGCGGAAGCAG___GCTCTCTTGTCGGACCTTCGTCTGTGACGCTCAGTCTTCCTCGCTCTTTGGCACCTGCGTGTGTG LDSLDLRVKGILSSQAE|dprs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22785 AIFM1::ZNF280C ENSG00000156709.15::ENSG00000056277.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2104 FALSE NA FALSE NA AIFM1 ENSG00000156709.15 protein_coding - - chrX:130124666-130165879:- chrX:130129970:- chrX:129258641-129299853:- chrX:129263945:- ZNF280C ENSG00000056277.16 protein_coding - - chrX:130202707-130268899:- chrX:130220480:- chrX:129336681-129402873:- chrX:129354454:- chrX:130129837,chrX:130129839 chrX:130221311,chrX:130221310 NA NA chrX:129263812,chrX:129263814 chrX:129355285,chrX:129355284 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Apoptosis-inducing_factor__mitochondrion-associated__C-term(97%),Mitochondria_Localisation_Sequence(100%),Pyridine_nucleotide-disulphide_oxidoreductase(100%)| AIF-MLS(100%),AIF_C(90%),Pyr_redox(100%),Pyr_redox_2(100%)| 8 7 4 421 33 ENST00000675050.1 ENST00000370978.9 upstream downstream duplicates(3),mismatches(1) GTCTTGTGGACAGTAGTTTGCCCACAGTTGGTGTTTTTGCAAAAGCAACTGCACAcGACAACCCCAAcTCTGCCACAGAGCAGTCAG___GAACTGGTATCCGATCAGAGAGTGAGACAGAGTCCGAGGCCTCAGAAATTACTATTCCTCCCAGCACCCCGGCAGTTCCACAGGCTCCCGTCCAGGGGGAGGACTACGGCAAAGGTGTCATCTTCTACCTCAGGGACAAAGTGGTCGTGGGGATTGTGCTATGGAACATCTTTAACCGAATGCCAATAGCAAGGAAG|AAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAA___GTTACTATTCGAGCTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTG LVDSSLPTVGVFAKATAhDNPnSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARK|KKGVHRCPKCRLQFLTSKEKAEHKAQHRTFIKPKELEGLPPGAKVTIRASLGPLQSKLPTAPFG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22790 LYL1::CACNA1A ENSG00000104903.5::ENSG00000141837.22 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2106 TRUE 3867 TRUE 1463 LYL1 ENSG00000104903.5 protein_coding - - chr19:13099033-13103161:- chr19:13102531:- chr19:13209847-13213975:- chr19:13213345:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13235730:- chr19:13317256-13743839:- chr19:13346544:- chr19:13102299,chr19:13102304 chr19:13242000,chr19:13242002 NA NA chr19:13213113,chr19:13213118 chr19:13352814,chr19:13352816 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Ion_transport_protein(16%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage_gated_calcium_channel_IQ_domain(100%) |Ca_chan_IQ(100%),GPHH(100%),Ion_trans(3%) 3 5 8 12 23 ENST00000264824.5 ENST00000664864.1 upstream downstream duplicates(4),mismatches(2) CCGGGCCGCCGGGGGCGGGGAGAAGGCGGGCCGGCCCGGGAGCCGCTCACTTTCCCTGGGGGGGACCTACGCGGAGACCTCGGCTATCCTGGCCTTCCGAGGCCCACGAGGAGGCGCGGCCCAACGCCGGGGCCTGGAGCATTGAGGCCGGACCCTCGCGAGACAGCAGAGCCTGGCCTGACGCTGGAAACCACACCCTGGCCCAGACTGCCAGCCCTGACGGGACAGAGCCAGGGCACTCACCAGGCTGCAAGAACAGTGCTGGG|AATAACTTCATCAACCTGAGCTTTCTCCGCCTCTTCCGAGCTGCCCGGCTCATCAAACTTCTCCGTCAGGGTTACACCATCCGCATTCTTCTCTGGACCTTTGTGCAGTCCTTCAAG___GCCCTGCCTTATGTCTGTCTGCTGATCGCCATGCTCTTCTTCATCTATGCCATCATTGGGATGCAG___GTGTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lymphoblastic leukemia derived sequence 1 1 T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 22791 LYL1::CACNA1A ENSG00000104903.5::ENSG00000141837.22 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2107 TRUE 3867 TRUE 1463 LYL1 ENSG00000104903.5 protein_coding - - chr19:13099033-13103161:- chr19:13102531:- chr19:13209847-13213975:- chr19:13213345:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13236618:- chr19:13317256-13743839:- chr19:13347432:- chr19:13102299,chr19:13102304 chr19:13242000,chr19:13242002 NA NA chr19:13213113,chr19:13213118 chr19:13352814,chr19:13352816 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Ion_transport_protein(16%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage_gated_calcium_channel_IQ_domain(100%) |Ca_chan_IQ(100%),GPHH(100%),Ion_trans(3%) 1 0 10 12 2 ENST00000264824.5 ENST00000573891.6 upstream downstream duplicates(4),mismatches(3) GGGCCAGCATCCTCCGGCCGCTGCGCCGCCAGGGGTGAGAGGGAGGAAACCGGGCCGCCGGGGGCGGGGAGAAGGCGGGCCGGCCCGGGAGCCGCTCACTTTCCCTGGGGGGGACCTACGCGGAGACCTCGGCTATCCTGGCCTTCCGAGGCCCACGAGGAGGCGCGGCCCAACGCCGGGGCCTGGAGCATTGAGGCCGGACCCTCGCGAGACAGCAGAGCCTGGCCTGACGCTGGAAACCACACCCTGGCCCAGACTGCCAGCCCTGACGGGACAGAGCCAGGGCACTCACCAGGCTGCAAGAACAGTGCTGGG|GCCTGGTCCCGTGCTACTCCACCCAGCCCCAGAAGCTGAGAAGCCATCCCTGAGAGGGGGGAAAAGGGCCCCAAATGCATCTTCTCCGACTCAGCGGGCAGCGAGGAtTCcCCCTGCAGCCGAACAGTCCCAGCTCCCTCCCGTCCTCCCCATTCCCGCTCGCCAAGGGG___AATAACTTCATCAACCTGAGCTTTCTCCGCCTCTTCCGgGCaGCtCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lymphoblastic leukemia derived sequence 1 1 T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 22792 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2108 TRUE 3868 TRUE 1464 CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138570318:- chr3:138213186-138313380:- chr3:138289160:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Phosphatidylinositol_3-_and_4-kinase(81%) |PI3_PI4_kinase(32%) 3 3 10 169 139 ENST00000264982.8 ENST00000674063.1 upstream downstream duplicates(2),mismatches(1) CACAAAGGATGAGACAGAATTTGAAATTGTTGGTGGAAGAAACATCATGTCAACAGAACATGATACAGGAGCTTATAGAAACTAATCAACAGCTTAG___AAATGAACTTCAGCTAGAGCAAAGCCGAGCAGCCAATCAAGAACAACGAGCTAATGACTTGGAACAAATTATGGAAAGTGTGAAATCCAAAATTGGTGAATTGGAGGATGAATCACTAAaTAGGGCTTGCCACCAACAGAATAAAATAAAAGATCTTCAAAAGGAGCAGAAAACTTTgCAG|GATGTTGCCTTATGGCTGTTTAGCAACAGGAGATCGCTCTGGCCTCATTGAAGTTGTGAGCACCTCTGAAACAATTGCTGACATTCAGCTGAACAGTAGCAATGTGGCTGCTGCAGCAGCCTTCAACAAAGATGCCCTTCTGAACTGGCTTAAAGAATACAACTCTGG___GGATGACCTGGACCGAGCCATTGAGGAATTTACACTGTCCTGTGCTGGCTACTGTGTAGCTTCTTATGTCCTTGGGATTGGTGACAGACATAGTGAC QRMRQNLKLLVEETSCQQNMIQELIETNQQLRNELQLEQSRAANQEQRANDLEQIMESVKSKIGELEDESLnRACHQQNKIKDLQKEQKTLQ|dvalwlfsnrrslwph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 22793 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3868 TRUE 1464 CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138571034:- chr3:138213186-138313380:- chr3:138289876:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Phosphatidylinositol_3-_and_4-kinase(81%) |PI3_PI4_kinase(32%) 1 3 7 207 139 ENST00000264982.8 ENST00000674063.1 upstream downstream duplicates(2) CAGGATTCCAGTCAACCATCAGACAGACTCATGACTGAAAAACAG___CAGGAAGAAGCAGAATGGGAAAGCATAAATGTGCTATTGATGATGCATGGCTTAAA...ATGAGACAGAATTTGAAATTGTTGGTGGAAGAAACATCATGTCAACAGAACATGATACAGGAGCTTATAGAAACTAATCAACAGCTTAG|GATGTTGCCTTATGGCTGTTTAGCAACAGGAGATCGCTCTGGCCTCATTGAAGTTGTGAGCACCTCTGAAACAATTGCTGACATTCAGCTGAACAGTAGCAATGTGGCTGCTGCAGCAGCCTTCAACAAAGATGCCCTTCTGAACTGGCTTAAAGAATACAACTCTGG___GGATGACCTGGACCGAGCCATTGAGGAATTTACACTGTCCTGTGCTGGCTACTGTGTAGCTTCTTATGTCCTTGGGAT MRQNLKLLVEETSCQQNMIQELIETNQQLr|MLPYGCLATGDRSGLIEVVSTSETIADIQLNSSNVAAAAAFNKDALLNWLKEYNSGDDLDRAIEEFTLSCAGYCVASYVLG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 22794 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3868 TRUE 1464 CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138594198:- chr3:138213186-138313380:- chr3:138313040:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Phosphatidylinositol_3-_and_4-kinase(81%) |PI3_PI4_kinase(32%) 0 1 0 209 139 ENST00000489254.5 ENST00000674063.1 upstream downstream none GTCGCGGAGGCGGGGCCTGACGTAGCTGATCCCAGCCTAACCTGGCCCGGCTGGCTGCTGGTGGGAGGCCGGCGACTGAGTAAG|GATGTTGCCTTATGGCT...GTCCTGTGCTGGCTACTGTGTAGCTTCTTATGTCCTTGGGATTGGTGACAGACATAGTGACAACATCATGGTCAAAAAAACTGGCCAG___CTCTTCCACATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 22795 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3868 TRUE 1464 CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138594444:- chr3:138213186-138313380:- chr3:138313286:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Phosphatidylinositol_3-_and_4-kinase(81%) |PI3_PI4_kinase(32%) 0 1 0 0 139 ENST00000470159.5 ENST00000674063.1 upstream downstream none CGAGACCAGCACATCGCACCGACGCCTTCGTTTGCG|GATGTTGCCTTATGGCTGTTTAGCAACAGGAGATCGCTCTGGCCTCATTGAAGTTGTGAGCACCTCTGAAACAATTGCTGACATTCAGCTGAACAGTAGCAATGTGGCTGCTGCAGCAGCCTTCAACAAAGATGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 22796 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3868 TRUE 1464 CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138591854:- chr3:138213186-138313380:- chr3:138310696:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none |Phosphatidylinositol_3-_and_4-kinase(81%) |PI3_PI4_kinase(32%) 0 0 0 313 139 ENST00000489254.5 ENST00000674063.1 upstream downstream low_entropy(1) CGGCGACTGAGTAAG___ATGAAGATCCAGTTTCAGACATGAGACTCGTTGGGTGATCATTTCATTGAGATCAACCTGAATGACCAGGTGTAAAGTGCAAGAGT...GCTATGACTGAG|GATGTTGCCTTATGGCTGTTTAGCAACAGGAGATCGCTCTGGCCTCATTGAAGTTGTGAGCACCTCTGAAACAATTGCTGACATTCAGC MTE|dvalwlfsnrrslwph* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 22799 USP43::PRPF8 ENSG00000154914.17::ENSG00000174231.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2110 FALSE NA FALSE NA USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9712132:+ chr17:9548015-9633004:+ chr17:9615449:+ PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1662153:- chr17:1553923-1588161:- chr17:1565447:- chr17:9715057,chr17:9715058 chr17:1669639,chr17:1669638 NA NA chr17:9618374,chr17:9618375 chr17:1572933,chr17:1572932 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Ubiquitin_carboxyl-terminal_hydrolase(100%)|JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%),PROCT_(NUC072)_domain(100%),PRP8_domain_IV_core(100%),U5-snRNA_binding_site_2_of_PrP8(63%),U6-snRNA_interacting_domain_of_PrP8(100%) UCH(100%)|JAB(100%),PROCT(100%),PRP8_domainIV(100%),U5_2-snRNA_bdg(6%),U6-snRNA_bdg(100%) 3 8 3 34 215 ENST00000285199.12 ENST00000304992.11 downstream downstream duplicates(2),mismatches(2) GCCGGAACTCTCTGGATGGCCAGTGGTACAGTTATGATGACAGCACGGTGGAACCGCTTCGAGAAGATGAGGTCAACACCAGAGGGGCTTATATCCTGTTCTATCAGAAGCGGAACAGCATCCCTCCCTGGTCAGCCAGCAGCTCCATGAGAG___GCTCTACCAGCTCCTCCCTGTCTGATCACTGGCTCTTACGGCTCGGGAGCCACGCTGGCAGCACAAGGGGAAGCCTGCTGTCCTGGAGCTCTGCCCCCTGCCCCTCCCTGCCCCAGGTTCCTGACTCTCCCATCTTCACCAACAGCCTCTGCAATCAGGAAAAGG|ATTGTGAATAAGTGGAATACAGCTCTCATTGGCCTTATGACATACTTTCGGGAGGCTGTGGTGAACACCCAAGAGCTCTTGGACTTACTGGTGAAGTGTGAGAACAAAATCCAGACACGTATCAAGATTGGACTCAACTCCAAGATGCCAAGTCGGTTCCCCCCGGTTGTGTTCTACACCCCTAAGGAGTTGGGTGGACTCGGCA RNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRNSIPPWSASSSMRGSTSSSLSDHWLLRLGSHAGSTRGSLLSWSSAPCPSLPQVPDSPIFTNSLCNQEK|dce* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22800 ENSG00000289862::TECPR2 ENSG00000289862.1::ENSG00000196663.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2111 TRUE 3869 TRUE 1465 ENSG00000289862 ENSG00000289862.1 lncRNA + + chr14:102552286-102591250:+ chr14:102552623:+ chr14:103018623-103057587:+ chr14:103018960:+ TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102376650:+ chr14:102829278-102968814:+ chr14:102842987:+ chr14:102553539,chr14:102553539 chr14:102363399,chr14:102363396 NA NA chr14:103019876,chr14:103019876 chr14:102829736,chr14:102829733 NA NA sense sense unknown intron 5'UTR/splice-site duplication high none |Propeller(100%),Tectonin_domain(100%) |Hyd_WA(100%),Tectonin(100%),WD40(100%) 4 3 7 22 55 ENST00000701178.1 ENST00000359520.12 downstream upstream duplicates(2),mismappers(2) CAGGGAGCCTGATTTTGGCACTGGTGTATTTCCAGAACCAAGGTGGGTGCCCGGTCTGAGGCCCTAGCGGGTGTCTGGGTCCCTTCCTGGAGGCCCCTTGCCTCCCTCAGCCCTGGCTTTTGGGACTTAGCAGGGGAGGAAGTTTTTTGTTTTGTTTTGTTTTGAGACGAAGTCTCACTGTCACCAAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCCTCTCCTGGGTTCAAGCGATTCTCCCGCCTCAGCGTTGCGAGTTGCTGGGACTACAG|CCCCCAGGTTTCCCTAGATGACAAATAAACATTCCTTTTCCTGCGTGAAGATAGTCTGTGGAAACCTTGGCCATGGCATCGATATCAGAGCCTGTTACATTCAGAGAGTTCTGCCCGTTGTACTATCTCCTCAATGCCATTCCGACAAAGATCCAGAAGGGTTTCCGCTCTATCGTGGTCTATCTCACGGCCCTCGACACCAACGGGGACTACATCGCGGTGGGCAGCAGCATCGGCATGCTCTATCTGTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22801 ENSG00000289862::TECPR2 ENSG00000289862.1::ENSG00000196663.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3869 TRUE 1465 ENSG00000289862 ENSG00000289862.1 lncRNA + + chr14:102552286-102591250:+ chr14:102552379:+ chr14:103018623-103057587:+ chr14:103018716:+ TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102376650:+ chr14:102829278-102968814:+ chr14:102842987:+ chr14:102553539,chr14:102553539 chr14:102363399,chr14:102363396 NA NA chr14:103019876,chr14:103019876 chr14:102829736,chr14:102829733 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication medium none |Propeller(100%),Tectonin_domain(100%) |Hyd_WA(100%),Tectonin(100%),WD40(100%) 0 6 0 50 55 ENST00000701178.1 ENST00000359520.12 downstream upstream none GCTGGAGCAGCCTGACCAAGTCCCACTTGCTGTTCTGCCAGGGAGCCTGATTTTGGCACTGGTGTATTTCCAGAACCAAG|CCCCCAGGTTTCCCTAGATGACAAATAAACATTCCTTTTCCTGCGTGAAGATAGTCTGTGGAAACCTTGGCCATGGCATCGATATCAGAGCCTGTTACATTCAGAGAGTTCTGCCCGTTGTACTATCTCCTCAATGCCATTCCGACAAAGATCCAGAAGGGTTTCCGCTCTATCGTGGTCTATCTCACGGCCCTCGA...CGGCACCTCAACCAGATGAGGAAGTACAACTTTGAG___GGGAAGACGGAATCTATCACTGTGGTGAAGCTGCTGAGCTGCTTTGATGACCTGGTGGCAGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22802 SNTA1::DYM ENSG00000101400.6::ENSG00000141627.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNTA1 ENSG00000101400.6 protein_coding - + chr20:33407957-33443763:- chr20:33410234:+ chr20:31995763-32031569:- chr20:31998040:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49257104:- chr18:46562757-46987717:- chr18:46783474:- chr20:33413888,chr20:33413886 chr18:49257356,chr18:49257358 NA NA chr20:32001694,chr20:32001692 chr18:46783726,chr18:46783728 NA NA antisense sense unknown CDS CDS/splice-site translocation/3'-3' high none |Dyggve-Melchior-Clausen_syndrome_protein(29%) |Dymeclin(55%),Hid1(78%) 5 4 5 303 271 unknown ENST00000269445.10 downstream downstream duplicates(3),mismatches(1) GCGGCAATTGAGCTCCTCAAAGTGG___...GTGCCCTAAAGAAGGAAGCTTGAATGCCCCTGGGGATAAGAGGCTTATTACCAGAGGGACACTCCCAGATCCTCCCAGCACACCTGTAGACACCTCCTGCACACCCTCGGCGGCCCGGTGACAGCCATCCACAAGCTGGCGGGTCCAGGCAGCCAGCTCCTGCGGTGACTCCACGCTGAACAG|GACAAGTACCTTCACACAAATTGTTTGGCAGCTTTAGCAAATATGTCGGCACAGTTTCGTTCTCTCCATCAGTATGCTGCCCAGAGGATCATCAG___TTTATTTTCTTTGCTGTCTAAAAAACACAACAAAGTTCTGGAACAAGCCACACAGTCCTTGAGAGGTTCGCTGAGTTCTAATGATGTTCCTCTACCAGATTAT___GCACAAGACCTAAATGTCATTGAAGAAGTGATTCGAATGATGTTAGAGATCATCAACTCCTGCCTGACAAATTCCCTTCACCACAACCCAAACTTGGTATACGCCCTGCTTTACAAACGCGATCTCTTTGAACAATTTCGAACTCATCCTTCATTTCAGGATATAATGCAAAATATTGATCTG___GTGATCTCCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22804 PGAP3::CDK12 ENSG00000161395.14::ENSG00000167258.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3870 FALSE NA PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39687834:- chr17:37827375-37853050:- chr17:37844087:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39492751:+ chr17:37617739-37723812:+ chr17:37649004:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Per1-like_family(2%)|Protein_kinase_domain(100%) Per1(0%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 1 1 661 731 ENST00000579146.5 ENST00000559663.2 upstream upstream duplicates(2),mismatches(1) CCGGCGGCGAGCCAGGGAGAAAGGATGGCCGGCCTGGCGGCGCGGTTGGTCCTGCTAGCTGGGGCAGCGGCGCTGGCGAGCGGCTCCCAGGGCGACCGTGAGCCGGTGTACCGCGACTGCGTACTGCAGTGCGAAGAGCAGAACTGCTCTGGGGGCGCTCTGAATCACTTCCGCTCCCGCCAGCCAATCTACATGAGTCTAGCAG|AATTTGTTGTCCTCGTTATGGAGAAAGAAGACAAACAGAAAGCGACTGGGGGAAACGCTGTGTGGACAAGTT...TTATTGGGATTATTGGAGAAGGAACCTATGGCCAAGTATATAAAGCCAAGGACAAAGACACAG___GAGAACTAGTGGCTCTGAAGAAGGTGAGACTAGACAATGAGAAAGAGGGCTTCCCAATCACAGCCATTCGTGAAATCAAAATCCTTCGTC...___GTGCCTTTTACCTTGTATTTGAGTATATGGACCATGAC MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLA|efvvlvmekedkqkatggnavwts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 22805 ENSG00000291215::ENSG00000230699 ENSG00000291215.1::ENSG00000230699.2 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000230699 ENSG00000230699.2 lncRNA + - chr1:911435-914948:+ chr1:913191:- chr1:846815-850328:+ chr1:848571:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site exon duplication/5'-5' high none none none 5 3 5 333 185 ENST00000506640.3 unknown upstream downstream duplicates(3),mismatches(5),multimappers(4) GCTATCGCAGCTGACTGCAGCCTCAACCTTCCAGGCTGAAGCGATCCTCCCACCTCAACCTCCCACGTGGCTGAGACTACAGGTGCTTGCCACTATGCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GCACAGTTCACAGAGGCAGCTGCTTTGGGAAGTTTGGTGCCAGACCCCGCCAAGCCCCTGCCCGGGGCATCTCCTCCCGCACCCTTCGCCGCCATCTTTCAGACGGCTGCTCTCCTGAGCCAGGCCCGCGCGCCATCTCCTTTAGGCTCCTGCAGTTCCTCCGCTGGCCTCCACGCTGCCCCAAGCAGGAGCGTTGGATCTGTCATTTCCTGACGTTAACGGTTAACCCGAGGCTCTGCTGCCTGCAGGATGAACACACTTTTCATTATTTCTCCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22806 NUDCD1::CCSER1 ENSG00000120526.12::ENSG00000184305.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3871 TRUE 1466 NUDCD1 ENSG00000120526.12 protein_coding - - chr8:109240919-109334121:- chr8:109322309:- chr8:110253148-110346350:- chr8:110334538:- CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:91198990:+ chr4:91048545-92526446:+ chr4:92120141:+ chr8:109304870 chr4:91160273 NA NA chr8:110317099 chr4:92081424 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none none 2 1 9 405 3 ENST00000239690.9 unknown upstream upstream duplicates(3),mismatches(1) CTGTGGCAGAGGTAAAACTTCGAGATGATCAATATACACTGGAACACATGCATGCTTTTGGAATGTATAATTACCTGCACTGTGATTCATGGTATCAAGACAGTGTCTACTATATTGATACCCTTGGAAGAATTATGAATTTAACAGTAATGCTG|AGCAAGACGGCTGCAGCATCTCCAGTCTCACAGCCTACAAAGTTTAAGTTGAAAAAGAATTGCCATGAAATTCTGAAATTCACTCTAATTAGATCCATTTGGTTGTAAGCCAAACCCTCAA VAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVML|sktaaaspvsqptkfklkkncheilkftlirsiwl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22807 NUDCD1::CCSER1 ENSG00000120526.12::ENSG00000184305.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3871 TRUE 1466 NUDCD1 ENSG00000120526.12 protein_coding - - chr8:109240919-109334121:- chr8:109322309:- chr8:110253148-110346350:- chr8:110334538:- CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:91598572:+ chr4:91048545-92526446:+ chr4:92519723:+ chr8:109304870 chr4:91160273 NA NA chr8:110317099 chr4:92081424 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 3 0 4 405 18 ENST00000239690.9 ENST00000509176.6 upstream upstream none CGATGGAGGTGGCGGCTAATTGCTCCCTACGGGTGAAGAGACCTCTGTTGGATCCCCGCTTCGAGGGTTACAAGCTCTCTCTTGAGCCGCTGCCTTGTTACCAGCTGGAGCTTGACGCAG___CTGTGGCAGAGGTAAAACTTCGAGATGATCAATATACACTGGAACACATGCATGCTTTTGGAATGTATAATTACCTGCACTGTGATTCATGGTATCAAGACAGTGTCTACTATATTGATACCCTTGGAAGAATTATGAATTTAACAGTAATGCTG|GCTACATATCGAAATCGAATTGTGAGCCAAAATCTCAGCACAAGGGACAGAAAAGCAATACATACTCCCACCGAGGACCGTTTTAGGTATTCGGCAGCGGACCAGACAAGCCCCTACAAAAACAAGACCTGTCAACTCCCAAGTCTCTGTTTAAGTAATTTCCTGAAGGACAAGGAACTAGCAGAAGTTATCAAACATTCAAGAGGAACTTATGAAACCCTCACTTCAGAC MEVAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDSWYQDSVYYIDTLGRIMNLTVML|ATYRNRIVSQNLSTRDRKAIHTPTEDRFRYSAADQTSPYKNKTCQLPSLCLSNFLKDKELAEVIKHSRGTYETLTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22809 PIR::ITGB4 ENSG00000087842.11::ENSG00000132470.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE TRUE 2113 TRUE 3872 TRUE 1467 PIR ENSG00000087842.11 protein_coding - - chrX:15384799-15493564:- chrX:15425906:- chrX:15402921-15511687:- chrX:15444029:- ITGB4 ENSG00000132470.14 protein_coding + + chr17:75721328-75757818:+ chr17:75740982:+ chr17:73717408-73753899:+ chr17:73737063:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Pirin(100%),Pirin_C-terminal_cupin_domain(17%)|Calx-beta_domain(100%),Fibronectin_type_III_domain(100%),Integrin_beta_chain_VWA_domain(0%) Pirin(100%),Pirin_C(0%)|Calx-beta(100%),Integrin_beta(55%),fn3(100%) 11 1 0 351 26 ENST00000380421.3 ENST00000580542.5 upstream upstream duplicates(4),inconsistently_clipped(1),mismatches(3) GCATTCTGCACGCTGAGATGCCTTGCTCAGAGGAGCCAGCCCATGGCCTACAACTGTGGGTTAATTTGAGGAGCTCAGAGAAGATGGTGGAGCCTCAGTACCAGGAACTGAAAAGTGAAGAAATCCCTAAACCCAGTAAGGATGGTGTGACAGTTGCTGTCATTTCTGGAGAAGCCCTGGGAATAAAG___TCCAAGGTTTACACTCGCACACCAACCTTATATTTGGACTTCAAATTGGACCCAGGAGCCAAACATTCCCAACCTATCCCTAAAG|GCAGCAGCCCAATGCCGGGAAAAAGTGAGTAGAAGACTCGTGGGTGAGAGGGCCCCCACTTCCTGCCCGCCTGTCCCCAGCCCAGCCACTGCCTCGTCCG ILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPK|gsspmpgkse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22810 PIR::ITGB4 ENSG00000087842.11::ENSG00000132470.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3872 TRUE 1467 PIR ENSG00000087842.11 protein_coding - - chrX:15384799-15493564:- chrX:15455848:- chrX:15402921-15511687:- chrX:15473971:- ITGB4 ENSG00000132470.14 protein_coding + + chr17:75721328-75757818:+ chr17:75740982:+ chr17:73717408-73753899:+ chr17:73737063:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Pirin(100%)|Calx-beta_domain(100%),Fibronectin_type_III_domain(100%),Integrin_beta_chain_VWA_domain(0%) Pirin(100%)|Calx-beta(100%),Integrin_beta(55%),fn3(100%) 1 0 0 359 26 ENST00000380421.3 ENST00000580542.5 upstream upstream none CTGAAAAGTGAAGAAATCCCTAAACCCAGTAAGGATGGTGTGACAGTTGCTGTCATTTCTGGAGAAGCCCTGGGAATAAAG|GCAGCAGCCCAATGCCGGGAAAAAGTGA LKSEEIPKPSKDGVTVAVISGEALGIK|aaaqcrekv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22811 CASC3::MRPL45P2 ENSG00000108349.17::ENSG00000291120.1 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40169446:+ chr17:38296571-38328424:+ chr17:38325699:+ MRPL45P2 ENSG00000291120.1 lncRNA - + chr17:47450568-47492493:- chr17:47465623:+ chr17:45527934-45569859:- chr17:45542989:+ chr17:40171656,chr17:40171652 chr17:47458990,chr17:47458983 NA NA chr17:38327909,chr17:38327905 chr17:45536356,chr17:45536349 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none CASC3/Barentsz_eIF4AIII_binding(100%)| Btz(100%)| 2 6 3 203 14 ENST00000264645.12 unknown downstream upstream duplicates(1) CTGCTCCAGGCGTCATGAACTTTGGTAATCCCAGTTACCCTTATGCTCCAGGGGCACTGCCTCCCCCACCACCGCCTCATCTGTATCCTAATACACAG___GCCCCATC...___GTATATGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCAGTCACCATCAAGCCCCCTCCACCTGAG|AGGCCTCCTCTGCAGTCTGTATCATGTCAGTTTCAGGGAGAAGAGAGAAAACATCGAATATAACAGAGCTGCATGGGGGAGGTACTGGATTTCCATTCCTGTGTATACCTCTCTGTAGCTCCCTCGATCTGGAATGCCAAAGAGAAGAGGGCACCCAGGGACCTAAGCATTACTTGGTCCCTGGATCAATACCATAATAATAACCTCGGAACCTCATCCATGTCTTCTAATGTGAATGCTCATCCCAGCTTGGAAGTAATGAAGACTACAAGCTGCTCTCC VYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPE|rpplqsvscqfqgeerkhri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22812 CMPK1::MYH11 ENSG00000162368.15::ENSG00000133392.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2114 FALSE NA FALSE NA CMPK1 ENSG00000162368.15 protein_coding + + chr1:47333790-47394866:+ chr1:47368615:+ chr1:47799462-47860538:+ chr1:47834287:+ MYH11 ENSG00000133392.18 protein_coding - - chr16:15703135-15857028:- chr16:15798687:- chr16:15796992-15950885:- chr16:15892544:- chr1:47372814,chr1:47372875,chr1:47372874 chr16:15800322,chr16:15800322,chr16:15800322 NA NA chr1:47838486,chr1:47838547,chr1:47838546 chr16:15894179,chr16:15894179,chr16:15894179 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Adenylate_kinase(41%)|Myosin_head_(motor_domain)(88%),Myosin_tail(100%) AAA_17(84%),AAA_18(84%),ADK(83%),Thymidylate_kin(81%),Zeta_toxin(83%)|IQ(100%),Myosin_head(56%),Myosin_tail_1(100%) 3 1 6 506 11 ENST00000699074.1 ENST00000300036.6 downstream downstream duplicates(3),low_entropy(1) GCGCGGTGTATGCTGAGCCGCTGCCGCAGCcGGCTGCTCCACGTCCTGGGCCTTAGCTTCCTGCTGCAGACCCGCCGGCCGATTCTCCTCTGCTCTCCACGTCTCATGAAGCCGCTGGTCGTGTTCGTCCTCGGCGGCCCCGGCGCCGGCAAGGGGACCCAGTGCGCCCGCATCGTCGAG___AAATATGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTGATGAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTGAAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGG|ATCGGGAGGACCAGTCCATTCTATGCAC___AGGCGAGTCTGGAGCCGGGAAAACCGAAAACACCAAGAAGGTCATTCAGTACCTGGCCGTGGTGGCCTCCTCCCACAAGGGCAAGAAAGACACAAGTATCACG___GGAGAGCTGGAAAAGCAGCTTCTACAAGCAAACCCGATTCTGGAGGCTTTCGGCAAC MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKR|igrtspfyaqaslepgkpktprrsfstwpwwppptrarktqvsreswkssfykqtrfwrlsa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 11, smooth muscle 1 AML leukaemia_lymphoma fusion translocation 22813 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 3 3 4 333 28 ENST00000506640.3 unknown upstream downstream duplicates(2),mismatches(1),multimappers(3) TGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGCCACACTGGTTCCTGCTGCCTGCAGCTTCCATTCTAACAGGTGTGGGGCTGATCACGAACAAATCCACTAATGAATAAATCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22818 TIAM2::IPCEF1 ENSG00000146426.19::ENSG00000074706.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TIAM2 ENSG00000146426.19 protein_coding + + chr6:154832697-155257723:+ chr6:154860998:+ chr6:155153831-155578857:+ chr6:155182132:+ IPCEF1 ENSG00000074706.14 protein_coding - + chr6:154154496-154356803:- chr6:154278237:+ chr6:154475631-154677937:- chr6:154599371:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 3 0 6 36 8 ENST00000461783.7 unknown downstream upstream duplicates(2),mismappers(1),mismatches(1) CACAGTTGCTGATATAGAAAGTGAACCAGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAG___GTTAATGATGAAATGGCAGGgAATTC...CCGCCCCCGTGGAATCACCCTACAGAAGAGGCCAGCTATAAAGGATGTCTCACACCTTTAAGATCAGTGTTTCTCAATGTGTGGACCATGGATACCTGTAT...GATTTGTTTAAAATTCAGGCTGAGCCCTTCCCAAGACCTAATAGAGCTAAAAGCTTTGGGAGTAGGTGGAGGAAACCTGCATCTTTACCCAGCAATCCAG|GCACCACTTCATGGGATTTTACATCTGAAAGAGGAACATGTGCTCTAGCAGAAGCCAGACTGACATTCACCAGGTCCAGGTCTCCTGACACTGCTGTGCTACAAAGAGCTGAGCCCTGTGGACAGGTCCGGGAGAATGAGACGCCAAGTAGAGAATGGGAATCCAAGAGACGCCAAGGCTCCAGACGTATGGATGCAAAAGTGATCTTGAAAGTAGAGATCCTCCGATCCTAGCCACCCCAGCTAAAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1273c chr6:154853360-154853436:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22819 TIAM2::ENSG00000288520 ENSG00000146426.19::ENSG00000288520.1 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TIAM2 ENSG00000146426.19 protein_coding + + chr6:154832697-155257723:+ chr6:154860998:+ chr6:155153831-155578857:+ chr6:155182132:+ ENSG00000288520 ENSG00000288520.1 protein_coding - + chr6:154159828-154510114:- chr6:154278237:+ chr6:154480963-154831248:- chr6:154599371:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 3 0 6 36 8 ENST00000461783.7 unknown downstream upstream duplicates(2),mismappers(1),mismatches(1) CACAGTTGCTGATATAGAAAGTGAACCAGTGGTAGAAAGCACAGAAACTGAGGGGACATAATCATCACTCAGTAG___GTTAATGATGAAATGGCAGGgAATTC...CCGCCCCCGTGGAATCACCCTACAGAAGAGGCCAGCTATAAAGGATGTCTCACACCTTTAAGATCAGTGTTTCTCAATGTGTGGACCATGGATACCTGTAT...GATTTGTTTAAAATTCAGGCTGAGCCCTTCCCAAGACCTAATAGAGCTAAAAGCTTTGGGAGTAGGTGGAGGAAACCTGCATCTTTACCCAGCAATCCAG|GCACCACTTCATGGGATTTTACATCTGAAAGAGGAACATGTGCTCTAGCAGAAGCCAGACTGACATTCACCAGGTCCAGGTCTCCTGACACTGCTGTGCTACAAAGAGCTGAGCCCTGTGGACAGGTCCGGGAGAATGAGACGCCAAGTAGAGAATGGGAATCCAAGAGACGCCAAGGCTCCAGACGTATGGATGCAAAAGTGATCTTGAAAGTAGAGATCCTCCGATCCTAGCCACCCCAGCTAAAGTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-1273c chr6:154853360-154853436:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22822 GPATCH8::MYO1D ENSG00000186566.13::ENSG00000176658.17 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPATCH8 ENSG00000186566.13 protein_coding - - chr17:44395281-44503430:- chr17:44503326:- chr17:42472649-42580798:- chr17:42580694:- MYO1D ENSG00000176658.17 protein_coding - + chr17:32492522-32877177:- chr17:32769235:+ chr17:30819540-31204195:- chr17:31096253:+ chr17:44502108,chr17:44502113 chr17:32740245,chr17:32740240 NA NA chr17:42579476,chr17:42579481 chr17:31067263,chr17:31067258 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none G-patch(0%)| 1 7 0 59 77 ENST00000591680.6 unknown upstream upstream duplicates(3),mismatches(3) AACCGGAGAGCGTCGTCCTGAGAGGAGTGAAGGCGGCAAAATGGCGGACCGCTTCTCCCGCTTCAACGAAGACCGAGACTTTCAG|GTGACTCCTGGAAATTCTGATGACATTTTGGGACTAAAAGGAAAACCAGCCTAAGAGGACAGAGCTGTCCATGAGTGTGGCAGAGTTGTAAGTTGGGGAAACAACCAAAAAAACACCTGGGTCCCTGACAACATTGTTAAGGCAA MADRFSRFNEDRDFQ|vtpgnsddilglkgkpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22825 LINC02323::TECPR2 ENSG00000259230.1::ENSG00000196663.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02323 ENSG00000259230.1 lncRNA + + chr14:102545254-102555826:+ chr14:102552623:+ chr14:103011591-103022163:+ chr14:103018960:+ TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102376650:+ chr14:102829278-102968814:+ chr14:102842987:+ chr14:102553539,chr14:102553539 chr14:102363399,chr14:102363396 NA NA chr14:103019876,chr14:103019876 chr14:102829736,chr14:102829733 NA NA sense sense unknown intron 5'UTR/splice-site duplication high none |Propeller(100%),Tectonin_domain(100%) |Hyd_WA(100%),Tectonin(100%),WD40(100%) 1 3 3 22 55 unknown ENST00000359520.12 downstream upstream duplicates(1),mismappers(2) CCCGGTCTGAGGCCCTAGCGGGTGTCTGGGTCCCTTCCTGGAGGCCCCTTGCCTCCCTCAGCCCTGGCTTTTGGGACTTAGCAGGGGAGGAAGTTTTTTGTTTTGTTTTGTTTTGAGACGAAGTCTCACTGTCACCAAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCCTCTCCTGGGTTCAAGCGATTCTCCCGCCTCAGCGTTGCGAGTTGCTGGGACTACAG|CCCCCAGGTTTCCCTAGATGACAAATAAACATTCCTTTTCCTGCGTGAAGATAGTCTGTGGAAACCTTGGCCATGGCATCGATATCAGAGCCTGTTACATTCAGAGAGTTCTGCCCGTTGTACTATCTCCTCAATGCCATTCCGACAAAGATCCAGAAGGGTTTCCGCTCTATCGTGGTCTATCTCACGGCCCTCGACACCAACGGGGACTACATCGCGGTGGGCAGCAGCATCGGCATGCTCTATCTGTACTGCCGGCACCTCAACCAGATGAGGAAGTACAACTTTGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22826 ROCK1::ESCO1 ENSG00000067900.9::ENSG00000141446.11 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROCK1 ENSG00000067900.9 protein_coding - - chr18:20944612-21111813:- chr18:21045292:- chr18:18524573-18691774:- chr18:18625253:- ESCO1 ENSG00000141446.11 protein_coding - - chr18:21529284-21600884:- chr18:21575777:- chr18:19109245-19180845:- chr18:19155738:- chr18:21044433,chr18:21044436 chr18:21577548,chr18:21577548 NA NA chr18:18624394,chr18:18624397 chr18:19157509,chr18:19157509 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Protein_kinase_domain(46%)|ESCO1/2_acetyl-transferase(100%),zinc-finger_of_acetyl-transferase_ESCO(100%) PK_Tyr_Ser-Thr(59%),Pkinase(43%)|Acetyltransf_13(100%),zf-C2H2_3(100%) 0 1 5 125 56 ENST00000635540.2 ENST00000383276.1 upstream downstream none TCTGATTCTGCTTTTTTCTGGGAAGAAAGGGACATCATGGCTTTTGCCAACAGTCCTTGGGTTGTTCAG___CTTTTTTATGCATTCCAAGATGATCGTTATCTCTACATGGcGATGGAATACATGCCTGGTGGAGATCTTGTAAACTTAATGAGCAACTATGATGTGCCTGA...CTTGCATTGGATGCAATCCATTCCATGGGTTTTATTCACAG|GTGCTGTGTGATGTGTTAAGAGCATATTAGAAGGAATGGTTTTGTCTAATTTTCTTCATGAGTTATGGTGGCTGAGACATCGAGTCTATATTTTGGGGCAAAAACT___AAACGGCAGCACAAAAGGAAATCTATATTAATAGAATATTTTGTTGAACAAAGGAGGTTAGATAAGAACTGCAAACCAACAGACTCAGCA LALDAIHSMGFIHr|ccvmc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 1 AGC DMPK ROCK Q13464 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rho associated coiled-coil-containing protein kinase 1 2 pancreatic ductal adenocarcinoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 22827 RTN4RL1::VPS53 ENSG00000185924.7::ENSG00000141252.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RTN4RL1 ENSG00000185924.7 protein_coding - - chr17:1934677-2025334:- chr17:2024853:- chr17:1837971-1928628:- chr17:1928147:- VPS53 ENSG00000141252.21 protein_coding - + chr17:508503-721717:- chr17:656841:+ chr17:411743-624957:- chr17:560081:+ chr17:1986255,chr17:1986261 chr17:628842,chr17:628836 NA NA chr17:1889549,chr17:1889555 chr17:532082,chr17:532076 NA NA sense antisense out-of-frame CDS/splice-site UTR inversion/5'-5' high none none none 0 4 2 47 27 ENST00000331238.7 unknown upstream upstream mismatches(2) CTCGGCGCGGGGCTGGAGCTCACCATGCCCCTGCGGGGCCGGGCCACCGGGCACGAGCGGATCCCCGGCTTGCCCCCGCCTCGACGCGCTCGGATTAGCTGCAGCTGGCGCCCAGGGATTTGAATCTGGACCCCGGGAGGGAGTGCGCCTAGGCCGACCTCGGAGCGGCGGCCCCGTGGCCAACATGCTTCGCAAAG|CAATGGTGAGGCGGATACCCTTTCCTCGGGGAAGAGAAATCCATCGTTTGTTGCCCTTGCCAATAGTGAAAATGTTGGAAACTTGAGTGCCAAAGCTGTTGCCACTGGTGTCTTTCACATGAACCACGTCAGAAGATCCCGGGTACCTCTCTCTGTTGGGGATCACACCAACTCTTCCCAG___GTGTACAGCAAAGCAACCTTTGGTGTCACGGATCAGATGGAAATTCTCTCCTGTCTTGTCAA...AACTTGGCCATGAGTTCATGGATAGATACGTCCTCATTAAAGTGAGAAACTTGGCCGTGAGTTTGTGGATAGATACATCCTCATTAAAGTGAGAAACTCGG MLRK|amvrripfprgreihrllplpivkmlet* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22829 NCOA3::EYA2 ENSG00000124151.19::ENSG00000064655.19 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCOA3 ENSG00000124151.19 protein_coding + + chr20:47501887-47656877:+ chr20:47653544:+ chr20:46130631-46285621:+ chr20:46282288:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47143059:+ chr20:45523263-45817492:+ chr20:45771698:+ chr20:47654341,chr20:47654342 chr20:47126284,chr20:47126282 NA NA chr20:46283085,chr20:46283086 chr20:45754923,chr20:45754921 NA NA sense sense unknown 3'UTR CDS/splice-site duplication high none Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)|haloacid_dehalogenase-like_hydrolase(88%) DUF1518(100%),DUF4927(100%),NCOA_u2(100%),Nuc_rec_co-act(100%),PAS(100%),PAS_11(100%),PAS_9(100%),SRC-1(100%)|Hydrolase(46%) 1 4 1 255 7 ENST00000371998.8 ENST00000357410.7 downstream upstream duplicates(1) GCAGTGTATAGTATGGTGCACATGAATGGCAGCAGTGGTCACATGGGACAGATGAACATGAACCCCATGCCCATGTCTGGCATGCCTATGGGTCCTGATCA...GTACAAATcACACTGCACTAGGATTATTGGGAAGGAATCATTGTTCCAGGCATCCATCTTGGAAGAAAGGACCAGCTTTGAGCTCCATCAAGG|GACACCACGACGTCCGTGCGCATTGGCCTTATGATGGAAGAGATGATCTTCAACCTTGCAGATACACATCTGTTCTTCAATGACCTGGAGGTTTGTGGTTGCTGATTTCATTTAATATTTGCCATGTTTAATCACCTGCATCTAGTTTAT...___GATTGTGACCAGATCCACGTTGATGACGTCTCATCAGATGACAATGGCCAAGATTTAAGGTGGGAATTTGGGGAGTCAAAAATGC...ACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGGGTGAAGGAGATGTACAATACCTACAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3616 chr20:47166967-47167058:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Carcinosarcoma OVARY,LUNG,LUNG,UTERUS,UTERUS no_match 46130763,46271128,46130763,46212005|46212005,46254225 FALSE,FALSE,FALSE,FALSE|FALSE,FALSE 45801355,45700824,45618640,45618640|45644820,45700824 FALSE,FALSE,FALSE,FALSE|FALSE,FALSE YES,YES,YES,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,5UTR-5UTR,5UTR-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22830 SMOX::ATRN ENSG00000088826.18::ENSG00000088812.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMOX ENSG00000088826.18 protein_coding + + chr20:4120980-4187747:+ chr20:4183654:+ chr20:4101627-4168394:+ chr20:4164301:+ ATRN ENSG00000088812.18 protein_coding + + chr20:3471018-3651118:+ chr20:3535253:+ chr20:3451665-3631765:+ chr20:3515900:+ chr20:4184422,chr20:4184420 chr20:3507809,chr20:3507804 NA NA chr20:4165069,chr20:4165067 chr20:3488456,chr20:3488451 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Flavin_containing_amine_oxidoreductase(87%)|CUB_domain(95%),Kelch_motif(100%),Lectin_C-type_domain(100%),Plexin_repeat(100%) Amino_oxidase(84%),FAD_binding_2(100%),NAD_binding_8(100%)|CUB(14%),Kelch_1(100%),Kelch_5(100%),Kelch_6(100%),Laminin_EGF(38%),Lectin_C(100%),PSI(100%) 1 3 2 273 200 ENST00000278795.7 ENST00000262919.10 downstream upstream duplicates(1),mismatches(1) CCAACATTCCAAAACCTCGGCGAATCTTGCGCTCGGCCTGGGGCAGCAACCCTTACTTCCGCGGCTCCTATTCATACACGCAGGTGGGCTCCAGCGGGGCGGATGTGGAGAAGCTGGCCAAGCCCCTGCCGTACACgGAGAGCTCAAAGACAGCG|ACTAACTGGATCTTCTGGGTTTGTGACAGATGGACCTGGAAATTATAAATACAAAACGAAGTGCACGTGGCTCATTGAAGGACA___GCCAAATAGAATAATGAGACTTCGTTTCAATCATTTTGCTACAGAGTGTAGTTGGGACCATTTATATGTTTATGATGGGGACTCAATTTATGCACCGCTAGTTGCTGCATTTAG___TGGCCTCATTGTTCCTGAG...TTGTTGCCACATCAGGTTATGCCTTGCTGCATTTTTTTAGTGATGCTGCTTATAATTTGACTGGATTTAATATTACTTACAG___TTTTGATATGTGTCCAAAT NIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTA|tnwifwvcdrwtwkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22832 IRF2::RUSC2 ENSG00000168310.12::ENSG00000198853.12 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IRF2 ENSG00000168310.12 protein_coding - - chr4:184385702-184474558:- chr4:184390703:- chr4:185306856-185395712:- chr4:185311857:- RUSC2 ENSG00000198853.12 protein_coding + + chr9:35490111-35561898:+ chr9:35546430:+ chr9:35490108-35561895:+ chr9:35546427:+ chr4:184390063,chr4:184390063,chr4:184390065,chr4:184390065 chr9:35503225,chr9:35503223,chr9:35503221,chr9:35503011 NA NA chr4:185311217,chr4:185311217,chr4:185311219,chr4:185311219 chr9:35503222,chr9:35503220,chr9:35503218,chr9:35503008 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Interferon_regulatory_factor_transcription_factor(100%)|RUN_domain(100%),Variant_SH3_domain(100%) IRF(100%)|RUN(100%),SH3_2(100%) 2 0 3 159 50 ENST00000696840.1 ENST00000361226.8 upstream upstream none GCTAGACATGGGgGGGATGTGGAAAAAGATGCACCACTCTTTAGAAACTGGGCAATCCATACAG___GAAAGCATCAACCAGGAGTAGATAAACCTGATCCCAA...CTGAGAGCGACGAGCAGCCGGTCAGCATGAGCGAGCTCTACCCTCTGCAGATCTCCCCCGTGTCTTCCTATGCAG___AAAGCGAAACGACTGATAGTGTGCCCAGCGATGAAGAGAGTGCCGAG|GTGCCAAGCTCTCCTGATGAAATGTGTTCTGCCCCACTGGGCTCCAGGGACAGTGTCTGGTGCTGTTGAAGCCCTTATTCGAACTTTCCAGAATGGATAGTCCCCCAAAGCTGACTGGAGAGACCCTCATCGTTCATCACATCCCCCTGGTGCACTGCCAAGTCCCAGACAGGCAGTGCTG ESDEQPVSMSELYPLQISPVSSYAESETTDSVPSDEESAE|vpsspdemcsaplgsrdsvwcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22833 PAWR::ASTN2 ENSG00000177425.11::ENSG00000148219.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3876 TRUE 1468 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291513:- chr9:119185391-120177348:- chr9:120053792:- chr12:79663587,chr12:79663595 chr9:117301221,chr9:117301226 NA NA chr12:80057367,chr12:80057375 chr9:120063500,chr9:120063505 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Annexin-like_domain(100%),Astrotactin-2_C-terminal_beta-hairpin_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),MAC/Perforin_domain(100%) |ASTN1_2_EGF_Fn(100%),ASTN_1_2_N(79%),ASTN_2_hairpin(100%),Annexin_like(100%),FXa_inhibition(100%),MACPF(100%),NHL(100%),zf-C3HC4(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%) 2 3 0 402 4 ENST00000328827.9 ENST00000313400.9 upstream downstream none CGGCGGTCGGAGGACGAGCCCCCAGCCGCCTCTGCCTCGGCTGCACCGCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|AGATGTCTGGCACAGCgGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCtGGGCAGCTGGCCCAAGCCACCGCCCCCACTC...GCCTCATCGCGCTGCTGCTGCTGCTGCTGGTGTTCACCGTGGCGCTGTACGCCCAGCGACGTTGGCAGAAGCGTCGCCGCATCCCCCAGAAGAGCGCAAGCACAGAAGCCAC RRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|rclaqrrtsrwctgdssgwrmapctstsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22834 PAWR::ASTN2 ENSG00000177425.11::ENSG00000148219.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3876 TRUE 1468 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117214742:- chr9:119185391-120177348:- chr9:119977021:- chr12:79663587,chr12:79663595 chr9:117301221,chr9:117301226 NA NA chr12:80057367,chr12:80057375 chr9:120063500,chr9:120063505 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Annexin-like_domain(100%),Astrotactin-2_C-terminal_beta-hairpin_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%),MAC/Perforin_domain(100%) |ASTN1_2_EGF_Fn(100%),ASTN_1_2_N(66%),ASTN_2_hairpin(100%),Annexin_like(100%),FXa_inhibition(100%),MACPF(100%),NHL(100%),zf-C3HC4(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%) 1 2 0 402 5 ENST00000328827.9 ENST00000313400.9 upstream downstream none GCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|GGTGGCCTCATCGCGCTGCTGCTGCTGCTGCTGGTGTTCACCGTGGCGCTGTACGCCCAGCGACGTTGGCAGAAGCGTCG...CAGAAGCCACTCATGAGATCCACTACATCCCATCTGTGCTGCTGGGTCCCCAGGCGCGGGAGAGCTTCCGTTCATCCCGGCTGCAAACCCACAATTCCGTC...TGACTGTGAGGAGGATGAGGAGCCACCTAGGCGGGCCAACCATGTCTCCCGCGAGGACGAGTTTGGCAGCCAGGTGACCCACACTCTGGACAGTCTGGGAC KGQIEKRKLREKRRSTGVVNIPAAE|GGLIALLLLLLVFTVALYAQRRWQKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22840 ARG2::PALS1 ENSG00000081181.8::ENSG00000072415.10 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3879 TRUE 1469 ARG2 ENSG00000081181.8 protein_coding + + chr14:67619920-67651708:+ chr14:67620966:+ chr14:68086637-68118425:+ chr14:68087683:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67254204:+ chr14:67707430-67802778:+ chr14:67720921:+ chr14:67626334,chr14:67626331 chr14:67250592,chr14:67250586 NA NA chr14:68093051,chr14:68093048 chr14:67717309,chr14:67717303 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Arginase_family(12%)|Guanylate_kinase(100%),L27_N(100%),L27_domain(100%),PDZ_domain(100%),Variant_SH3_domain(100%) Arginase(2%)|Guanylate_kin(100%),L27(100%),L27_N(100%),PDZ(100%),PDZ_6(100%),SH3_1(100%),SH3_2(100%) 1 0 3 141 23 ENST00000261783.4 ENST00000676464.1 downstream upstream none GTAAGAGCAGCGGCGGGCGGTGGCGCTCACTCCCGGCTTCCAACCGCGCGGAGCCTCTGCCTTGGAGATTCTCAGTGCTGCGGATCATGTCCCTAAGGGGC...CTCCAGTTTGG|ATTTTAAGTTTCTTAAGGATACGGACTCTGCCTCAGCAGCCTTTTTCTTGACAATGACTATCCAAGTTTTTGGTACCAAGTGGGTACTCG SSL|dfkflkdtdsasaaffltmtiqvfgtkwvl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22841 ARG2::PALS1 ENSG00000081181.8::ENSG00000072415.10 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3879 TRUE 1469 ARG2 ENSG00000081181.8 protein_coding + + chr14:67619920-67651708:+ chr14:67620966:+ chr14:68086637-68118425:+ chr14:68087683:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67269701:+ chr14:67707430-67802778:+ chr14:67736418:+ chr14:67626334,chr14:67626331 chr14:67250592,chr14:67250586 NA NA chr14:68093051,chr14:68093048 chr14:67717309,chr14:67717303 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Arginase_family(12%)|Guanylate_kinase(100%),L27_N(100%),L27_domain(100%),PDZ_domain(100%),Variant_SH3_domain(100%) Arginase(2%)|Guanylate_kin(100%),L27(100%),L27_N(100%),PDZ(100%),PDZ_6(100%),SH3_1(100%),SH3_2(100%) 0 1 3 141 279 ENST00000261783.4 ENST00000677382.1 downstream upstream none AGCATGGTCCCGCTGCCATAAGAGAAGCTGGCTTGATGAAAAGGCTCTCCAGTTTGG|AATAAGAAAGCCTTGAGTTTTGTGAAAAACCGGAGAAGAGAAAC...AAAAGGACAGTAGAAAAGGCTTTTCCAGTTTGCATAAT___ATTTCCTTCATGGATACTTTTTCATAGCATTATTATGTGATGTGAGAAGTTTTTTTTTTTGAAGTAACATGGATTTTATACTACAGAATCAAG HGPAAIREAGLMKRLSSL|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22848 ATG14::TBPL2 ENSG00000126775.9::ENSG00000182521.6 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3881 TRUE 1470 ATG14 ENSG00000126775.9 protein_coding - - chr14:55366391-55411830:- chr14:55377819:- chr14:55833109-55878548:- chr14:55844537:- TBPL2 ENSG00000182521.6 protein_coding - - chr14:55414210-55456726:- chr14:55440463:- chr14:55880928-55923444:- chr14:55907181:- chr14:55375566,chr14:55375576,chr14:55375642 chr14:55440936,chr14:55440946,chr14:55441005 NA NA chr14:55842284,chr14:55842294,chr14:55842360 chr14:55907654,chr14:55907664,chr14:55907723 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Vacuolar_sorting_38_and_autophagy-related_subunit_14(100%)|Transcription_factor_TFIID_(or_TATA-binding_protein__TBP)(100%) ATG14(100%)|TBP(100%) 2 0 2 179 3 ENST00000247178.6 ENST00000247219.6 upstream downstream duplicates(1) CGGAGACACCAGCATTAGCATTACAGGGCCTTGGATTAGCCTCCCTAACAATGGGGACTACTCTGCCTACTACAGCTGGGTGGAGGAGAAGAAAACAACCC...GTAACCCTGCCTACACCATCAGTGCTGCGCTGTGCTATGCAACTCAGCTGGTCAACATTCTGTCTCATATACTTGATGTAAATCTTCCCAAAAAGCTCTGCAACAG___TGAATTTTGTGGCGAAAATCTAAGCAAGCAGAAATTTACTCGAGCAGTGAAGAAACTGAATGCAAATATTCTTTACCTTTGTTTTTCTCAG___CATGTAAATTTAG...CTCAGGAATCTAATGTACCTGGTCAGTCCAAGCTCTGAACACCTAGGCAG|TGGGATTACcGTCCATGGAGCAGGAGGAGACCTACCTGGAGCTCTACCTGGACCAGTGCGCCGCTCAG___GATGGCCTTGCCCCACCCAGGTCTCCCCTGTTCAGCCCAGTTGTACCTTATGATATGTACATACTGAATGCATCCAAT LRNLMYLVSPSSEHLGs|gitvhgaggdlpgalpgpvrrsgwpcptqvspvqpsctl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22849 ATG14::TBPL2 ENSG00000126775.9::ENSG00000182521.6 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3881 TRUE 1470 ATG14 ENSG00000126775.9 protein_coding - - chr14:55366391-55411830:- chr14:55377819:- chr14:55833109-55878548:- chr14:55844537:- TBPL2 ENSG00000182521.6 protein_coding - - chr14:55414210-55456726:- chr14:55435934:- chr14:55880928-55923444:- chr14:55902652:- chr14:55375566,chr14:55375576,chr14:55375642 chr14:55440936,chr14:55440946,chr14:55441005 NA NA chr14:55842284,chr14:55842294,chr14:55842360 chr14:55907654,chr14:55907664,chr14:55907723 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Vacuolar_sorting_38_and_autophagy-related_subunit_14(100%)|Transcription_factor_TFIID_(or_TATA-binding_protein__TBP)(98%) ATG14(100%)|TBP(97%) 1 0 0 179 6 ENST00000247178.6 ENST00000247219.6 upstream downstream duplicates(1) AGCAGAAATTTACTCGAGCAGTGAAGAAACTGAATGCAAATATTCTTTACCTTTGTTTTTCTCAG___CATGTAAATTTAGATCAATTACAACCACTGCATACCCTCAGGAATCTAATGTACCTGGTCAGTCCAAGCTCTGAACACCTAGGCAG|GAATATAGTTTCCACTGTAAACCTGGCCTGTAAGTTGGATCTGAA QKFTRAVKKLNANILYLCFSQHVNLDQLQPLHTLRNLMYLVSPSSEHLGr|NIVSTVNLACKLDL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22850 TMCO4::ST3GAL3 ENSG00000162542.14::ENSG00000126091.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19787026:- chr1:20008733-20126438:- chr1:20113519:- ST3GAL3 ENSG00000126091.21 protein_coding + + chr1:43705824-43931165:+ chr1:43894383:+ chr1:44171495-44396837:+ chr1:44360055:+ chr1:19782142,chr1:19782149 chr1:43872572,chr1:43872565 NA NA chr1:20108635,chr1:20108642 chr1:44338244,chr1:44338237 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Glycosyltransferase_family_29_(sialyltransferase)(100%) |Glyco_transf_29(100%) 1 1 1 57 36 ENST00000488449.1 ENST00000335430.10 upstream upstream none AGTGTTGTACATTATAAACCGGGGCTGCTGATGAGGAGTGGGGAACTGGCTCTCTGGAACGTGTGACAGCAGGCAGAAGGGGTGAGAGTGAAAT...TTcCTCCAAgGAcCCATCCAGAcCCTGAGCAGCCTGTCTTCAGACAGAGAGAGGCCCACGGCTGTTTCTTGAAATCTGG|GTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTTTTGGGATCAAAGGTCAAG___ACAATCTGATCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22853 ASCC3::TSTD3 ENSG00000112249.14::ENSG00000279170.3 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3883 FALSE NA ASCC3 ENSG00000112249.14 protein_coding - - chr6:100508194-100881372:- chr6:100679618:- chr6:100956070-101329248:- chr6:101127494:- TSTD3 ENSG00000279170.3 protein_coding + + chr6:99520976-99589899:+ chr6:99584880:+ chr6:99968852-100037775:+ chr6:100032756:+ chr6:100677391,chr6:100677395 chr6:99549082,chr6:99549078 NA NA chr6:101125267,chr6:101125271 chr6:99996958,chr6:99996954 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DEAD/DEAH_box_helicase(51%),Helicase_conserved_C-terminal_domain(24%)| DEAD(93%),Helicase_C(66%),ResIII(93%)| 0 1 2 67 6 ENST00000369162.7 ENST00000623858.2 upstream upstream duplicates(1) CTGGACACCAG___GTGATGGTGTTTGTACATGCTCGAAATGCCACTGTAAGAACAGCTATGTCTCTAATAGAAAGAGCAAAAAATTGTGGCCATATTCCCTTCTTTTTTCCTACCCAAGGACATGACTATGTACTTGCAGAAAAACAG|TTACTATGAGAGGTGTGTTAAAATCTCTCTCTGAAAGAAAGAAAGAAAGAAGAAAAGAAAGAAAGAAAGGAAAGAAAGAGAGAAAGAAAGAGACAACCGTGAAG...CATCAGTGGACTCTTCCTTTCACAAAACATTTTTCTGTAGTATGCTATGCTGTTTGACAGCATTTTACTCACAGTAGAACTGCTTTCAAAATTGGAGTCAG GHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQ|ll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22855 UBOX5::TLDC2 ENSG00000185019.17::ENSG00000101342.10 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBOX5 ENSG00000185019.17 protein_coding - - chr20:3107573-3160196:- chr20:3121384:- chr20:3088219-3140842:- chr20:3102030:- TLDC2 ENSG00000101342.10 protein_coding + - chr20:36876121-36894235:+ chr20:36885549:- chr20:35504524-35522638:+ chr20:35513952:- chr20:3118884,chr20:3118886 chr20:36889214,chr20:36889213 NA NA chr20:3099530,chr20:3099532 chr20:35517617,chr20:35517616 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none U-box_domain(100%)| DUF5918(100%),FAST_1(100%),FAST_2(100%),RAP(100%),U-box(100%)| 0 1 2 120 8 ENST00000348031.6 unknown upstream downstream none GACCATTTCCTGCTCCAGCACTCCATCCCTGGCTGCCACCTGCTTGGGAGAGCACAGACGGCATTGGCAGTGATCCCTTCTTCCATTGTTCTGCCCTCTCAGAAAAGGAAGATAGAGCAGGCTGAACATGTCCCAGACAGTAA...CCTCAGAGCACACTGCTAAGAAAATGAAAGCCACCAATGAGCCCAGCCTGACACATATGGACTGCTCGACAG|GACATGACCTTTGACCTGAAGGAGTAAGA...CTGTGGAAGGAATTGAGACCAAGTTCATGGTGCCGTTTGGAATAGCAATCAACGAACTACCGAATTCATGAGGAATACAAGTGCCAGAAGGCCAGAGATAGCCAAGAATTAACCAATTTTTTAGAAGATGAGATTCCATAACAATAGACTGGAAAGACAGGCTCCCCTGAAAAAG SEHTAKKMKATNEPSLTHMDCST|ghdl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22860 TMCO4::ENSG00000284989 ENSG00000162542.14::ENSG00000284989.1 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19787026:- chr1:20008733-20126438:- chr1:20113519:- ENSG00000284989 ENSG00000284989.1 protein_coding + + chr1:43650149-43931014:+ chr1:43894383:+ chr1:44115820-44396686:+ chr1:44360055:+ chr1:19782142,chr1:19782149 chr1:43872572,chr1:43872565 NA NA chr1:20108635,chr1:20108642 chr1:44338244,chr1:44338237 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site inversion high none none |Glyco_transf_29(100%) 1 1 1 57 36 ENST00000488449.1 ENST00000645057.1 upstream upstream none AGTGTTGTACATTATAAACCGGGGCTGCTGATGAGGAGTGGGGAACTGGCTCTCTGGAACGTGTGACAGCAGGCAGAAGGGGTGAGAGTGAAAT...TTcCTCCAAgGAcCCATCCAGAcCCTGAGCAGCCTGTCTTCAGACAGAGAGAGGCCCACGGCTGTTTCTTGAAATCTGG|GTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTTTTGGGATCAAAGGTCAAG___ACAATCTGATCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22864 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78432752:+ chr16:78133297-79246564:+ chr16:78466649:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77876370:+ chr16:77822461-78014004:+ chr16:77910267:+ chr16:78631988 chr16:77864720 NA NA chr16:78665885 chr16:77898617 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none WW_domain(100%),short_chain_dehydrogenase(98%)|Zinc-binding_dehydrogenase(94%) KR(100%),WW(100%),adh_short(28%),adh_short_C2(100%)|ADH_zinc_N(5%),ADH_zinc_N_2(87%) 0 1 1 2 1 ENST00000683929.1 ENST00000302536.3 downstream upstream none CAAAAAACGACTATTGGGCGATGCTGGCTTATAACAGGTCCAAGCTCTGCAACATCCTCTTCTCCAACGAGCTGCACCGTCGCCTCTCCCCACGCGGGGTC...CCAACATTCATCGCAGCTGGTGGGTGTACACACTGCTGTTTACCTTGGCGAGGCgTTTCACCAAGTCCATG|AATCTCTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGGGACAACcCTGGAAAAGGTCTCAGTCTTCTCAAACCCCTGGGAACCTAC NIHRSWWVYTLLFTLARrFTKSM|nlc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH exact 78198186,78133782 FALSE,FALSE 78005747,77850818 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22868 FUT8::MAX ENSG00000033170.17::ENSG00000125952.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3886 FALSE NA FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ MAX ENSG00000125952.21 protein_coding - + chr14:65006174-65102695:- chr14:65061184:+ chr14:65472892-65569413:- chr14:65527902:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense antisense unknown 5'UTR/splice-site 3'UTR duplication/5'-5' medium none none none 0 1 33 663 388 ENST00000360689.9 unknown downstream upstream duplicates(9),mismatches(3) GGCGGTCTGGGCTGCTCTGGGGCAGCCCTTCGGTCCACTGCTCTGCATCGCGGGCGCCGGGAATTTTCCGAGTCCGAGCGG___...GTGGCTTTGGCAGCTGCGACGGGGAGCGGCGGAGACCGCCTCTGCTCCCGCCTGGG___GTTGCTGCTTTTGCTCAGAGGACATCCATGACCCTAATGGTCTTTTTGTTCAAGATAAAGTGATTTTTTGCCTTTGTTGATTAACTGGACAAATTCAG|CCCACTCACCCAGTGTACAACATTGGACCAGACAAGGTGATCCAGGCCACTACATACTTTCTACAGAAGCCAGTCCCAGGTTTTGAGGAGCTTAAGGATGAGACATCGGCAGAGCCTGCAACCGACTAGAGGACCTGGGTCCCGGCAGCTCTTTGCTCACCCATCTCCCCAGTCAGACAAGGTTTATACGTTTCAATACATACTGCATTCTGTGCTACACAAGCCTTAGCCTCAGTGGAGCTGTGGTTCTCTTGGTACTTTCTTGTCAAACAAAACCAATGGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22885 CDK12::IKZF3 ENSG00000167258.16::ENSG00000161405.17 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39526316:+ chr17:37617739-37723812:+ chr17:37682569:+ IKZF3 ENSG00000161405.17 protein_coding - + chr17:39757718-39864312:- chr17:39773482:+ chr17:37913971-38020565:- chr17:37929735:+ chr17:39527035,chr17:39527035,chr17:39527034 chr17:39770759,chr17:39770757,chr17:39770757 NA NA chr17:37683288,chr17:37683288,chr17:37683287 chr17:37927012,chr17:37927010,chr17:37927010 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Protein_kinase_domain(100%)| PK_Tyr_Ser-Thr(100%),Pkinase(100%)| 1 2 5 793 11 ENST00000559663.2 unknown downstream upstream none GCAGCAGGACTCAGAGACCATGGCCCCAGAGGAGTCTTTGAAGGAAGCACCCTCTGCCCCAGTGATCCTGCCTTCAGCAGAACAGACGACCCTTGAAGCTTCAAGCACACCAGCTGACATGCAGAATATATTGGCAGTTCTCTTGAGTCAGCTGATGAAAACCCAAGAGCCAGCAGGCAGTCTGGAGGAAAACAACAGTGACAAGAACAGTGGGCCACAGGGGCCCCGAAGAACTCCCACAATGCCACAGGAGGAGGCAGCAG|TTACTTCACAGGGAGATCCGATGGTTTGTTGAAGTGTCAAAACCTCATTAACATGTTTACCACAG___AGCTATCAGAATGAACCATGAAGAATAAAAGTACACAATGAAAAACTAATTATTTTAACAGAGGTTAAGCTAGG QQDSETMAPEESLKEAPSAPVILPSAEQTTLEASSTPADMQNILAVLLSQLMKTQEPAGSLEENNSDKNSGPQGPRRTPTMPQEEAA|vtsqgdpmvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 22886 NPEPPS::MED24 ENSG00000141279.18::ENSG00000008838.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPEPPS ENSG00000141279.18 protein_coding + + chr17:47522942-47624665:+ chr17:47545993:+ chr17:45600308-45702031:+ chr17:45623359:+ MED24 ENSG00000008838.21 protein_coding - + chr17:40019097-40061215:- chr17:40047775:+ chr17:38175350-38217468:- chr17:38204028:+ chr17:47547937,chr17:47547929 chr17:40045831,chr17:40045820 NA NA chr17:45625303,chr17:45625295 chr17:38202084,chr17:38202073 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Peptidase_M1_N-terminal_domain(29%)| Peptidase_M1_N(26%)| 0 0 7 836 27 ENST00000677120.1 unknown downstream upstream duplicates(1),mismappers(10),mismatches(4) CCCAGGCTCCCCCGGTCGCTCTCCTCCGGCGGTCGCCCGCGCTCGGTGGATGTGGCTGGCAGCTGCCGCCCCCTCCCTCGCTCGCCGCCTGCTCTTCCTCGGCCCTCCGCCTCCTCCCCTCCTCCTTCTCGTCTTCAGCCGCTCCcCTCtCCGCCGCCTCCACAGCCTGGGCCTCGCCGCGATGCCGGAGAAGAGGCCCTTCGAGCGGCTGCCTGCCGATGTCTCCCCCATCAACTACAGCCTTTGCCTCAAGCCCGACTTGCTGGACTTCACCTTCGAGGGCAAGCTGGAGGCCGCCGCCCAG___GTGAGGCAGGCGACTAATCAGATTGTGATGAATTGTGCTGATATTGATATTATTACAGCTTCATATGCACCAGAAGGAGATGAAG|GCTGGAGCACAATGGCGCAATCTCGGTTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCTTCAGCCTCCTGAGTAGCTGGGATTACAGACGCCCACCACCATGCCCGGCTAATTTTTGTATATTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTTCTGACCTCAGGTGATACACTCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGATTGAGCCACTGCGCCCAGCGCAAGATCTTTGT MWLAAAAPSLARRLLFLGPPPPPLLLLVFSRSplRRLHSLGLAAMPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDE|gwstmaqsrftatsasqvqailllqppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22894 ATP6V0D1::CTCF ENSG00000159720.13::ENSG00000102974.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V0D1 ENSG00000159720.13 protein_coding - - chr16:67438014-67481181:- chr16:67480957:- chr16:67471917-67515084:- chr16:67514860:- CTCF ENSG00000102974.16 protein_coding + - chr16:67562467-67639177:+ chr16:67564953:- chr16:67596370-67673080:+ chr16:67598856:- chr16:67474012,chr16:67474016 chr16:67571175,chr16:67571176 NA NA chr16:67507915,chr16:67507919 chr16:67605078,chr16:67605079 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none ATP_synthase_(C/AC39)_subunit(8%)| vATP-synt_AC39(0%)| 3 0 2 559 1 ENST00000290949.8 unknown upstream downstream none CGCGATTCGTGCCGGCCGGTCCTGGTTCTCCGGTCCCGCCGCTCCCGCAGCAGCCATGTCGTTCTTCCCGGAGCTTTACTTTAACGTGGACAATGGCTACTTGGAGGGACTGGTGCGCGGCCTGAAGGCCGGGGTGCTCAGCCAGGCCGACTACCTCAACCTGGTGCAGTGCGAGACGCTAGAGG|ATTGTTTTTTAATAAAAACAAAACAAAGCATGATTCCTGGCATATGGGAATTTCAAAGGATAGCAACTGTGTGGAAAAGGTCTATTCCACTAAAACAGCATAAATGACGTATAAACCCAAGAAGCTGATGACTGCATATGAAACAACCAAACCAAGAAGCAAAATATGGTCTATGGAGCACAGTACTAACCCGGGAAAAC MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLE|dcfliktkqsmipgiwefqriatvwkrsiplkqhk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22900 DOCK4::IMMP2L ENSG00000128512.24::ENSG00000184903.10 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111935540:- chr7:111366166-111846462:- chr7:111575595:- IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:110963565:- chr7:110302700-111202573:- chr7:110603621:- chr7:111919635,chr7:111919654 chr7:111207131,chr7:111207149 NA NA chr7:111559690,chr7:111559709 chr7:110847187,chr7:110847205 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none DOCK_N-terminus(88%),Variant_SH3_domain(100%)|Signal_peptidase__peptidase_S26_(51%) DOCK_N(76%),SH3_2(100%)|Peptidase_S26(12%) 3 0 0 6 4 ENST00000437633.6 ENST00000405709.7 upstream downstream none GAGGAGCTGGAGGTCATCTTCTCACTCTTTGACAGTAAAGAGAACCGGCCAATCAG___TGAGAGATTTTTCTTGAGGCTGAATAGAAACGGGCTTCCCAAAGC...CTTTGTG___GATTTGGGCAGCAGTGAGCTAAGAAAGGACATTTATATCACCGTGCACATTATCCGAATCG___GTCGAATGGGAGCAGGAGAAAAAAAGAATGCCTGTAGTGTCCAGTACCGACGACCCTTTGGCTGTGCAGTTCTTAGCATCGCTGACCTGCTAACAGGAGAG...ACACAGAGAGTGAGTGGTACCAAATCCATGAGAACATCATCAAAAAGCTGAATGCACGTTATAACTTGACTGGCTCCAATGCAG|GTCTCCTAAAAACCCAGAACAGAAGATCATTAAGAGAGTGATTGCTCTTGAAGGAGATATTGTCAG___AACCATAGGAC TESEWYQIHENIIKKLNARYNLTGSNA|gllktqnrrslre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Prostate adenocarcinoma KIDNEY,LUNG,PROSTATE no_match 111846157,111846157,111846157 FALSE,FALSE,FALSE 110603621,110303777,111127397 TRUE,FALSE,FALSE PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22927 LRSAM1::NIBAN2 ENSG00000148356.15::ENSG00000136830.12 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRSAM1 ENSG00000148356.15 protein_coding + + chr9:127451489-127503499:+ chr9:127483020:+ chr9:130213768-130265778:+ chr9:130245299:+ NIBAN2 ENSG00000136830.12 protein_coding - + chr9:127505339-127578989:- chr9:127548215:+ chr9:130267618-130341268:- chr9:130310494:+ chr9:127485108 chr9:127544805 NA NA chr9:130247387 chr9:130307084 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Leucine_rich_repeat(100%)| LRR_6(100%),LRR_8(100%)| 1 2 3 186 9 ENST00000373324.8 unknown downstream upstream duplicates(2),mismatches(3) ATCAGAG___ACAAAAGAAAAGCTCCGAGATTTTGAAATCGCTGGAAAATGAAAG___AATAAGAATGGAACAGTTGATGTCCATAACCCAGGAGGAGACTGAGAGCCTGCGGCGACGTGACGTTGCCT|GTTAATTCATCAGGAAGGAGAAGTGGAGCAAGAAACATCAAcGAAGACTTCTGAAAGCCAACACCCAAACGTACCGCACCCCTGAGAACCTCGACCGACCACAGCCCCCCTGCTCTGTGACACTGGCATGGAGAACACTCTGGCCTTGCCGCCTCTCCCTTAGCTGCTGCATCCATCACCAGAGATGCTGGTTGGGAAAATCAAGG QRQKKSSEILKSLENERIRMEQLMSITQEETESLRRRDVA|c* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22930 ZYG11A::SCP2 ENSG00000203995.11::ENSG00000116171.19 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3900 TRUE 1471 ZYG11A ENSG00000203995.11 protein_coding + + chr1:52842511-52894998:+ chr1:52867777:+ chr1:53308183-53360670:+ chr1:53333449:+ SCP2 ENSG00000116171.19 protein_coding + + chr1:52927276-53051698:+ chr1:53027969:+ chr1:53392948-53517370:+ chr1:53493641:+ chr1:52875980,chr1:52875970 chr1:53016709,chr1:53016696 NA NA chr1:53341652,chr1:53341642 chr1:53482381,chr1:53482368 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |SCP-2_sterol_transfer_family(100%) |Alkyl_sulf_C(100%),SCP2(100%) 1 1 3 42 639 ENST00000371532.5 ENST00000371514.8 downstream upstream none AAATTTCCCCCATTACCAGCAG___GATTCTTGTGGATGTTCCATTTGACAG___GTTTGATGCTGCCAAGTTTGTCATGAGATGGCTCTGTAAGCATGAAAACCCC...GGCAGTGAGTGTCACCTCTATTCTGGCTCTGCAG___CTCTCACCTGAGCAAACGGCACAGCTTGAAGAGCTTTTCATGGCAGTTAAG|TTCTTTTAGAACTCATCAAATTGAAG...TTGTTTTTAAGGAGATTGAGAAGAAACTTGAAGAG___GAAGGGGAACAGTTTGTGAAGAAAATCGGTGGTATTTTTGCCTTCAAGGTGAAAGATGGCCCTGGG...TGACTGGTAAAATGAATCCTCAGTCG___GCCTTCTTTCAAGGCAAATTGAAAATCACTGGCAACATGGGTCTCGCTATGAAGTTACAAAATCTTCAGCTTCAG AVSVTSILALQLSPEQTAQLEELFMAVK|ff* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22931 ZYG11A::SCP2 ENSG00000203995.11::ENSG00000116171.19 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3900 TRUE 1471 ZYG11A ENSG00000203995.11 protein_coding + + chr1:52842511-52894998:+ chr1:52867777:+ chr1:53308183-53360670:+ chr1:53333449:+ SCP2 ENSG00000116171.19 protein_coding + + chr1:52927276-53051698:+ chr1:53038917:+ chr1:53392948-53517370:+ chr1:53504589:+ chr1:52875980,chr1:52875970 chr1:53016709,chr1:53016696 NA NA chr1:53341652,chr1:53341642 chr1:53482381,chr1:53482368 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |SCP-2_sterol_transfer_family(90%) |Alkyl_sulf_C(100%),SCP2(51%) 0 1 2 42 523 ENST00000371532.5 ENST00000371514.8 downstream upstream duplicates(2) GGCAGTGAGTGTCACCTCTATTCTGGCTCTGCAG___CTCTCACCTGAGCAAACGGCACAGCTTGAAGAGCTTTTCATGGCAGTTAAG|GAAGGGGAACAGTTTGTGAAGAAAATCGGTG...CACCTGGGTGGTGGATGTGAAGAATGGCAAAGGATCAGTGCTTCCTAACTCAG___ATAAGAAGGCTGACTGCACAATCACAATGGCTGACTCAGACTTCCTGG AVSVTSILALQLSPEQTAQLEELFMAVK|EGEQFVKKIG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22944 GATAD2A::MAU2 ENSG00000167491.18::ENSG00000129933.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3904 TRUE 1472 GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19406019:+ chr19:19496635-19619741:+ chr19:19516828:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19335718:+ chr19:19431638-19469563:+ chr19:19446527:+ chr19:19409327,chr19:19409326 chr19:19323686,chr19:19323682 NA NA chr19:19520136,chr19:19520135 chr19:19434495,chr19:19434491 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Cohesin_loading_factor(87%) |Cohesin_load(57%),TPR_8(9%) 0 3 0 27 81 ENST00000683918.1 ENST00000262815.13 downstream upstream duplicates(1) CGGACCAGCAGCCCCCGTAACCTGCGCGCTGCCCTAGGGCCCGGCCGACCCGCGGCCCG|TGGTTGATATCACAGCAA___ATCCCaCAGTTCGAAGATGTTAAATTTGAAGCAGCAAGTCTGTTGTCTGAATTGTACTGTCAAGA...TATTGGCACTGCCGCCTGCTCTTCCAGCTCGCT___CAACTGCACACGCTTGAGAAGGACCTGGTGTCtGCCTGTGACCTCCTGGGTGTAGGGGCCGAGTACGCCCGGG...CACACG___GGCGCTGTTCCTCCTCAGCAAGGGGATG___CTGCTGCTGATGGAGCGAAAGCTGCAGGAGGTGCACCCGCTGCTGACCCTCTGCGGGCAGATCGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22945 GATAD2A::MAU2 ENSG00000167491.18::ENSG00000129933.21 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3904 TRUE 1472 GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19386138:+ chr19:19496635-19619741:+ chr19:19496947:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19335718:+ chr19:19431638-19469563:+ chr19:19446527:+ chr19:19409327,chr19:19409326 chr19:19323686,chr19:19323682 NA NA chr19:19520136,chr19:19520135 chr19:19434495,chr19:19434491 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Cohesin_loading_factor(87%) |Cohesin_load(57%),TPR_8(9%) 0 3 0 18 81 ENST00000360315.7 ENST00000262815.13 downstream upstream none CGCCACAAGACCTGACCGGACTGCGCCGCCCGAGGCCGTCGGCCGCCGTCAGCGAGGGCGCCGAGCAACTTCG|TGGTTGATATCACAGCAA___ATCCCaCAGTTCGAAGATGTTAAATTTGAAGCAGCAAGTCTGTTGTCTGAATTGTACTGTCAAGAG___AATTCCGTTGATGCAGCAAAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGACCCCATATTGGCACTGCCGCCTGCTCTTCCAGCTCGCT___CAACTGCACACGCTTG...GCGTGAAGCCGTGTCTGAAGCAGCTGCAGCAGTGCATCCAGACCATCTCCACACTGCACGATGATGAGATCCTGCCCAGCAACCCCGCTGACCTCTTCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22964 FBF1::TEN1 ENSG00000188878.20::ENSG00000257949.7 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBF1 ENSG00000188878.20 protein_coding - - chr17:75909574-75941140:- chr17:75926758:- chr17:73905655-73937221:- chr17:73922839:- TEN1 ENSG00000257949.7 protein_coding + - chr17:75979240-76000586:+ chr17:75987407:- chr17:73975321-73996667:+ chr17:73983488:- chr17:75926449,chr17:75926456 chr17:75994166,chr17:75994170 NA NA chr17:73922530,chr17:73922537 chr17:73990247,chr17:73990251 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none none none 1 1 0 29 8 ENST00000636174.2 unknown upstream downstream duplicates(2),low_entropy(1) CAAGCCTGCAG___GGGGTGCCATTCCCACCAAGAAGTCACTTCCGTCTCCCAGCAGCTCTGGGCATCAGAACAGGAGGTTTTCCTCTGAAG___ACTTGGAAGACC...CTATGATGAAGGAGGAATCACCAAGCAGCCGCCTGTGACACAGAGTAAAACAGCTTCTGACAAGAGCCCCAGCACAGTGAGAGATCAAG|AAACTGCTGTGTTATGAGGACCCTCACACAGAACTACAGAGAAATCCACATTGTCTGGAACTGAGTTATCTTGCCAAGAGCCAGCACTAATTTGCCAAACGTGAACAAG...ACTGCAGCCCTGGCCAACATCTGGATGCCACTCCCATtAtCGACCCTGAGCCAGATCCAAACAGTTAAACCACTCCCAAATTCCTGACCCACAGTAACTAT YDEGGITKQPPVTQSKTASDKSPSTVRDQ|etavl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22967 ENSG00000267426::TEN1 ENSG00000267426.5::ENSG00000257949.7 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267426 ENSG00000267426.5 protein_coding - - chr17:75898645-75930129:- chr17:75926758:- chr17:73894726-73926210:- chr17:73922839:- TEN1 ENSG00000257949.7 protein_coding + - chr17:75979240-76000586:+ chr17:75987407:- chr17:73975321-73996667:+ chr17:73983488:- chr17:75926449,chr17:75926456 chr17:75994166,chr17:75994170 NA NA chr17:73922530,chr17:73922537 chr17:73990247,chr17:73990251 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' low none none none 1 1 0 29 8 ENST00000593156.1 unknown upstream downstream duplicates(2),low_entropy(1) CAAGCCTGCAG___GGGGTGCCATTCCCACCAAGAAGTCACTTCCGTCTCCCAGCAGCTCTGGGCATCAGAACAGGAGGTTTTCCTCTGAAG___ACTTGGAAGACC...CTATGATGAAGGAGGAATCACCAAGCAGCCGCCTGTGACACAGAGTAAAACAGCTTCTGACAAGAGCCCCAGCACAGTGAGAGATCAAG|AAACTGCTGTGTTATGAGGACCCTCACACAGAACTACAGAGAAATCCACATTGTCTGGAACTGAGTTATCTTGCCAAGAGCCAGCACTAATTTGCCAAACGTGAACAAG...ACTGCAGCCCTGGCCAACATCTGGATGCCACTCCCATtAtCGACCCTGAGCCAGATCCAAACAGTTAAACCACTCCCAAATTCCTGACCCACAGTAACTAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22973 ALDH1A2::PXMP4 ENSG00000128918.15::ENSG00000101417.12 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ALDH1A2 ENSG00000128918.15 protein_coding - - chr15:57953424-58497866:- chr15:58419971:- chr15:58245622-58790065:- chr15:58712170:- PXMP4 ENSG00000101417.12 protein_coding - - chr20:33702758-33720319:- chr20:33710753:- chr20:32290564-32308125:- chr20:32298559:- chr15:58230637,chr15:58230639 chr20:33712904,chr20:33712903 NA NA chr15:58522836,chr15:58522838 chr20:32300710,chr20:32300709 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation low none |Tim17/Tim22/Tim23/Pmp24_family(67%) |Tim17(23%) 0 1 0 16 169 ENST00000558239.5 ENST00000409299.8 upstream downstream none ATCGAGGGCAGAAGcTCTGGGTTTGAGTCCAGCAGTGCTTTAG|CCTCCAGGAGAAGCTGTGGGCCATACTGCAGGCCACATATATCCACTCCTGGAACCTG...CAGTCCTACATACAAGGCAAGACCTACCCAGCACACGCATTCCTGGCGGCCTTCCTCGGGGGTATCCTGGTGTTTGGAGAAAACAATAACATCAACAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22987 UBE3B::TIAM1 ENSG00000151148.14::ENSG00000156299.15 MM1S SRR8616070 SRR8652132 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE3B ENSG00000151148.14 protein_coding + + chr12:109477402-109536705:+ chr12:109481742:+ chr12:109915207-109974510:+ chr12:109919547:+ TIAM1 ENSG00000156299.15 protein_coding - + chr21:31118416-31559977:- chr21:31413823:+ chr21:32490734-32932290:- chr21:32786136:+ chr12:109483501,chr12:109483503,chr12:109483501,chr12:109483498 chr21:31413199,chr21:31413205,chr21:31413205,chr21:31413193 NA NA chr12:109921306,chr12:109921308,chr12:109921306,chr12:109921303 chr21:32785512,chr21:32785518,chr21:32785518,chr21:32785506 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 5 6 2 72 29 ENST00000434735.6 unknown downstream upstream duplicates(1),mismatches(5) AGAACTCGGGTGTTTTGGGCTGAGACAGTGGCAGCTGCGGCCCCGACCCCAAGTGCGGGGACCTCCGGCG?ATAAAG___AAAAAATAACAAGCTTTTCTGAAGTGAGAAGCTGTTCTCAGCCACGAGTCCTGTGCAAGATCACTAATGATTACCTGGCATTTCTGCGACACAGGCAGGTCCTCAG|GGTTCCAGTGCcGCTAAATGAGATGAAGACCCAGTCCCAAAGCTGTGAGTGTGACTCAGCCAGTCCCCCCaCAACACGAGCTGGGGTTACGTCACCTGCACAAGGTCAACATCTGGAAAGCAGCAGAGCAACCGTgGTGATGGGAGTGGTGCATTCTTCCAAGTTCAAGGCAACTGCAAACATGACATTTGGCGGATGACAAAGGCCTAAAAGGAGACTTAGGATTTGGTTCAACTCTGTACTTCATTCCCTACCaCCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22992 CNTN4::SSUH2 ENSG00000144619.15::ENSG00000125046.16 MM1S SRR8616070 SRR8652132 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3910 TRUE 1473 CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2745697:+ chr3:2140497-3099643:+ chr3:2787381:+ SSUH2 ENSG00000125046.16 protein_coding - - chr3:8619386-8745040:- chr3:8635857:- chr3:8661072-8786726:- chr3:8677543:- chr3:2793111,chr3:2793111,chr3:2793111 chr3:8653134,chr3:8653137,chr3:8653133 NA NA chr3:2834795,chr3:2834795,chr3:2834795 chr3:8694820,chr3:8694823,chr3:8694819 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Immunoglobulin_I-set_domain(22%)| I-set(7%),Ig_2(16%),Ig_3(10%),ig(7%)| 2 1 0 5 5 ENST00000418658.6 ENST00000544814.7 downstream downstream none TGCAATCATTCATTTTGTGCCTTGCAG___ATGATTCCACACTGCATGGCtCGATTTTTATTCAAGAACCAAGTCCTGTAATGTTCCgTTTGGATTCTGcGGAG...CCAAGATGCTGGAACGTACCAGTGCACAGCGACAAACTCGTTTGGAACAATTGTTAGCAGAGAAGCAAAGCTTCAGTTTGCTT|GTGTGGTGGACCTCAGTTTTGAGGCCGAGAGTCCTCTGGCGCCCCCCACAGAGCTCCTGGAGAGACTGCCCAGCTATGACTGGCTTCTTCAAGGGGGCA___GAGGACAG QDAGTYQCTATNSFGTIVSREAKLQFA|cVVDLSFEAESPLAPPTELLERLPSYDWLLQGGRG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22993 CNTN4::SSUH2 ENSG00000144619.15::ENSG00000125046.16 MM1S SRR8616070 SRR8652132 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3910 TRUE 1473 CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2745697:+ chr3:2140497-3099643:+ chr3:2787381:+ SSUH2 ENSG00000125046.16 protein_coding - - chr3:8619386-8745040:- chr3:8623656:- chr3:8661072-8786726:- chr3:8665342:- chr3:2793111,chr3:2793111,chr3:2793111 chr3:8653134,chr3:8653137,chr3:8653133 NA NA chr3:2834795,chr3:2834795,chr3:2834795 chr3:8694820,chr3:8694823,chr3:8694819 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none Immunoglobulin_I-set_domain(22%)| I-set(7%),Ig_2(16%),Ig_3(10%),ig(7%)| 1 0 0 5 15 ENST00000418658.6 ENST00000435138.5 downstream downstream none GTTGATCAATAACCCCAATAAAACCCAAGATGCTGGAACGTACCAGTGCACAGCGACAAACTCGTTTGGAACAATTGTTAGCAGAGAAGCAAAGCTTCAGTTTGCTT|GTGTACCCCATCGTGGACTTCCCTCTG LINNPNKTQDAGTYQCTATNSFGTIVSREAKLQFA|cvphrglps NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 22994 CNTN4::SSUH2 ENSG00000144619.15::ENSG00000125046.16 MM1S SRR8616070 SRR8652132 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary arriba TRUE TRUE FALSE NA TRUE 3910 TRUE 1473 CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2745697:+ chr3:2140497-3099643:+ chr3:2787381:+ SSUH2 ENSG00000125046.16 protein_coding - - chr3:8619386-8745040:- chr3:8640069:- chr3:8661072-8786726:- chr3:8681755:- chr3:2793111,chr3:2793111,chr3:2793111 chr3:8653134,chr3:8653137,chr3:8653133 NA NA chr3:2834795,chr3:2834795,chr3:2834795 chr3:8694820,chr3:8694823,chr3:8694819 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none Immunoglobulin_I-set_domain(22%)| I-set(7%),Ig_2(16%),Ig_3(10%),ig(7%)| 0 1 0 5 1 ENST00000418658.6 ENST00000317371.8 downstream downstream none GAGAAGCAAAGCTTCAGTTTGCTT|CCCCTGTCAACCATCACTCTACTTTGTGTGTcTGAGTTTGACCACCTGAATCTTTTTGGCACCATCTCAAGTATAAT...CGAGAGTCCTCTGGCGCCCCCCACAGAGCTCCTGGAGAGACTGCCCAGCTATGACTGGCTTCTTCAAGGGGGCAGTAAGTTCCAAGAGGGCTTGGTTCTTT EAKLQFA|spvnhhstlcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23013 SMCO4::MS4A12 ENSG00000166002.7::ENSG00000071203.9 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2120 FALSE NA FALSE NA SMCO4 ENSG00000166002.7 protein_coding - - chr11:93478472-93543391:- chr11:93543276:- chr11:93211638-93276557:- chr11:93276442:- MS4A12 ENSG00000071203.9 protein_coding + + chr11:60492778-60507430:+ chr11:60506728:+ chr11:60260251-60274903:+ chr11:60274201:+ chr11:93514484,chr11:93515646,chr11:93514492,chr11:93515651 chr11:60505498,chr11:60506137,chr11:60505490,chr11:60506132 NA NA chr11:93247650,chr11:93248812,chr11:93247658,chr11:93248817 chr11:60272971,chr11:60273610,chr11:60272963,chr11:60273605 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none none none 1 88 15 66 181 ENST00000298966.7 ENST00000016913.8 upstream upstream duplicates(8),low_entropy(4),mismatches(9),multimappers(1) AGAGGAGAGGCGAGGCGGGGAGCGCAAGCGGCGGCGGCCACTGCCACGTATTCCCGGCAGTGGTGGCGGCGGCGGCGGCGGCGCCCGCGGGCAG|CTTTCTGGAAAAGGCATTTCAGCCACGCTGATGATCTTCTCCCTCTTGGAGTTCTTCGTAGCTTGTGCCACAGCCCATTTTGCCAACCAAGCAAACACCACAACCAATATG___TCTGTCCTGGTTATTCCAAATATGTATGAAAGCAACCCTGTGACACCAGCGTCTTCTTCAGCTCCTCCCAGATGCAACAACTACTCAGCTAATGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23014 LINC-PINT::ABCA13 ENSG00000231721.8::ENSG00000179869.15 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2121 TRUE 3912 TRUE 1474 LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130945720:- chr7:130476023-130794935:- chr7:130630479:- ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48520041:+ chr7:48211055-48687093:+ chr7:48559637:+ chr7:130944589,chr7:130944589,chr7:130932663,chr7:130932654,chr7:130932618,chr7:130932614,chr7:130932396 chr7:48173398,chr7:48173359,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48519139 NA NA chr7:130629348,chr7:130629348,chr7:130617422,chr7:130617413,chr7:130617377,chr7:130617373,chr7:130617155 chr7:48212995,chr7:48212956,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48558735 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |ABC-2_family_transporter_protein(12%),ABC_transporter(50%) |ABC2_membrane_3(0%),ABC_tran(82%) 20 25 24 100 49 ENST00000642963.1 ENST00000435803.6 upstream upstream duplicates(4),mismatches(1) GTGACTCCTGGGCTTTGGCTCAGCAGTAACTCCTCCATAAAAACAAGTGTGTGCATCTGGCTGTTAGAAGAATTCATGCTCATCCGG___GAAAAATGAGGAAGCTGTGAGTACCAGTGGAAGGAACGAGCCAGGAAGAGGGACTGGAACCATCTCAGAAGCCATGCCCCTCAGGCTGGAACTTGCCCTGTCTCCTCGCAGATGAG|AATTTACAGAATATCTATGATGTCCTCAAGTGGGTCTTTACTATTTTTCCTCAATTCTGTCTTGGTCAAGGACTGGTAGAACTCTGCTATAATCAGATCAAATATGACCTGACCCACAACTTCGGCATTGATTCCTATGTGAGTCCCTTTGAGATGAACTTTCTGGGCTGGATCTTCGTGCAACTGGCCTCGCAGGGCACAGTACTTCTCCTCTTGAGGGTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23015 LINC-PINT::ABCA13 ENSG00000231721.8::ENSG00000179869.15 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3912 TRUE 1474 LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130984053:- chr7:130476023-130794935:- chr7:130668812:- ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48520041:+ chr7:48211055-48687093:+ chr7:48559637:+ chr7:130944589,chr7:130944589,chr7:130932663,chr7:130932654,chr7:130932618,chr7:130932614,chr7:130932396 chr7:48173398,chr7:48173359,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48519139 NA NA chr7:130629348,chr7:130629348,chr7:130617422,chr7:130617413,chr7:130617377,chr7:130617373,chr7:130617155 chr7:48212995,chr7:48212956,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48558735 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |ABC-2_family_transporter_protein(12%),ABC_transporter(50%) |ABC2_membrane_3(0%),ABC_tran(82%) 1 0 2 13 49 ENST00000642963.1 ENST00000435803.6 upstream upstream none AGTTTCTCTGCCTTGCTGATCTGAGCTCAGACCTGCCAATTTACCAGAGATAATTGATAACACCCTGTAACAGCTGA___GAGGAAAATGGAAGAAACGGAGATACTTTTAGTGAAGCAGAATAAACCACTGAACAG|AATTTACAGAATATCTATGATGTCCTCAAGTGGGTCTTTACTATTTTTCCTCAATTCTGTCTTGGTCAAGGACTGGTAGAACTCTGCTATAATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23016 LINC-PINT::ABCA13 ENSG00000231721.8::ENSG00000179869.15 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3912 TRUE 1474 LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130945720:- chr7:130476023-130794935:- chr7:130630479:- ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48524248:+ chr7:48211055-48687093:+ chr7:48563844:+ chr7:130944589,chr7:130944589,chr7:130932663,chr7:130932654,chr7:130932618,chr7:130932614,chr7:130932396 chr7:48173398,chr7:48173359,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48519139 NA NA chr7:130629348,chr7:130629348,chr7:130617422,chr7:130617413,chr7:130617377,chr7:130617373,chr7:130617155 chr7:48212995,chr7:48212956,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48558735 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |ABC_transporter(50%) |ABC_tran(82%) 1 0 1 100 61 ENST00000642963.1 ENST00000435803.6 upstream upstream mismatches(1) CGCAGCCTCCAGTCTTGAGTGACTCCTGGGCTTTGGCTCAGCAGTAACTCCTCCATAAAAACAAGTGTGTGCATCTGGCTGTTAGAAGAATTCATGCTCAT...GGAAGCTGTGAGTACCAtTGGAAGGAACGAGCCAGGAAGAGGGACTGGAACCATCTCAGAAGCCAaGCaCCcCAGGCTGGAACTTGCCCTGTCTCCTCGCAGATGAG|GGGTCATTCTACTCTCCAAGGCACAGTCAAATCTTCTAAGGATACAGATGTTGAAAAAGAGGAAAAGAG...TATACAACCTTAGTAAACATTATCGACcCTTTTTCCAGAATATTATTGCTGTGCAAGATATTAGTTTGGGCATACCAAAAGGAGAG___TGCTTTGGACTTCTAGGGGTGAATGGAGCTGGGAAGAGCACGACTTTCAAAATGCTGAATGGTGAAGTTTCTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23017 SAE1::STK3 ENSG00000142230.13::ENSG00000104375.17 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SAE1 ENSG00000142230.13 protein_coding + + chr19:47113274-47210636:+ chr19:47143605:+ chr19:47616531-47713893:+ chr19:47646862:+ STK3 ENSG00000104375.17 protein_coding - + chr8:98371228-98942827:- chr8:98800174:+ chr8:99383456-99955055:- chr8:99812402:+ chr19:47148485,chr19:47148482 chr8:98783192,chr8:98783186 NA NA chr19:47651742,chr19:47651739 chr8:99795420,chr8:99795414 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none ThiF_family(16%)| ThiF(16%)| 3 5 15 630 18 ENST00000413379.7 unknown downstream upstream duplicates(2),low_entropy(1) AAGGAGGAGGCTGGCGGCGGCATTAGCGAGGAGGAGGCGGCACAGTATGACCGGCAGATCCGCCTGTGGGGACTGGAGGCCCAGAAACG___GCTGCGGGCCTCTCGGGTGCTTCTTGTCGGCTTGAAAGGACTTGGGGCTGAAATTGCCAAGAATCTCATCTTGGCAGGAGTGAAAGGACTGACCATGCTGGATCACGAACAG|AATTGAGGCCACCAAGCTACAGATGGTCTTACAAATGGAACCTCAAATGAGTTCAACTAACAACTTCTACCGAGGACCCCTGGACCGACCTGCTGGCACTTTCAATGGCCTAGAGAGCTCCCCTCTGGAGGACACTACAACTGCAGGGCCCCTTCAAAGCCCCTATCCAGCAGGAAGTAGTTAGAGCGGTCATCGGCCAAATTCCCAACAGCAGTTGGGGTGTCCTGTTTAGAGGGGGGATTGAGAGGTAACAACGTGCTAGCAGCCCTCACTCAC KEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23019 RASSF3::COLEC12 ENSG00000153179.14::ENSG00000158270.12 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2123 FALSE NA FALSE NA RASSF3 ENSG00000153179.14 protein_coding + + chr12:64507001-64697564:+ chr12:64610743:+ chr12:64900781-65091344:+ chr12:65004523:+ COLEC12 ENSG00000158270.12 protein_coding - - chr18:316737-500722:- chr18:320064:- chr18:316737-500722:- chr18:320064:- chr12:64636168,chr12:64636165 chr18:321027,chr18:321030 NA NA chr12:65029948,chr12:65029945 chr18:321027,chr18:321030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none none none 2 11 3 85 28 ENST00000542104.6 ENST00000400256.5 downstream downstream none CCTCCCTGGCCGCCTGCGCCCCGGGGAGGCCGCCCGCGCGCGACGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAA|TACTGTCATCTGCATTATAACGGACTGTGATGGGATCACATGAGCAAATTTTCAGCTCTCAAAGGCAAAGGACACTCCTTTCTAATTGCATCACCTTCTCATCAGATTGAAAAAAAAAAAGCACTGAAAACCAATTACTGAAAAAAAATTGACAGCTAGTGTTTTTTACCATCCGTCATTACCCAAAGA MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQ|ychlhyngl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23021 ARHGAP10::LINC02507 ENSG00000071205.12::ENSG00000251688.2 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3913 TRUE 1475 ARHGAP10 ENSG00000071205.12 protein_coding + + chr4:147732063-148072776:+ chr4:147822957:+ chr4:148653214-148993927:+ chr4:148744108:+ LINC02507 ENSG00000251688.2 lncRNA + + chr4:147567606-147594589:+ chr4:147572681:+ chr4:148488758-148515741:+ chr4:148493833:+ chr4:147824299,chr4:147824296 chr4:147569876,chr4:147569870 NA NA chr4:148745450,chr4:148745447 chr4:148491028,chr4:148491022 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none BAR_domain_of_APPL_family(40%)| BAR_3(63%)| 4 4 7 96 17 ENST00000336498.8 ENST00000509370.1 downstream upstream none GGAAGAACCTCATCGCTGCGACGAAAA___GTCTGTCAGTGGCCCAGCGGAAGTTTGCTCATTCACTCAGAGACTTTAAGTTTGAGTTTATCGGTGATGCTGTGACAGATGATGAACGATGCATAG___ATGCTTCCTTACGTGAATTTTCAAATTTTTTGAAGAATCTGGAGGAACAGAGAGAAATTATG|GGGCAAGAGGCCTGGATGAAGAAATACCCTCAGAAACTCCCACTCTTCTGGTTCCTGCTGAAGACTCCAGTAATAAAAGTTATTCATACCTACCTCCACCATCTTGGCTGGGAAGTCAAG___GAAGAAGATAGCAGCCCGCAACCCGGAAGAGGGCCCTCACCAGAACCTACCATGCTGGCACCCAGACCTCAGACTTCCAGCCTCCAGAAAT___TCATCTAGGATCACTCCAGCTGCTCCAGATAGCAAGATTTGCC KNLIAATKSLSVAQRKFAHSLRDFKFEFIGDAVTDDERCIDASLREFSNFLKNLEEQREIM|gqeawmkkypqklplfwfllktpvikvihtylhhlgwevkeedsspqpgrgpspeptmlaprpqtsslqkfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4799 chr4:147782595-147782668:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23022 ARHGAP10::LINC02507 ENSG00000071205.12::ENSG00000251688.2 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3913 TRUE 1475 ARHGAP10 ENSG00000071205.12 protein_coding + + chr4:147732063-148072776:+ chr4:147822957:+ chr4:148653214-148993927:+ chr4:148744108:+ LINC02507 ENSG00000251688.2 lncRNA + + chr4:147567606-147594589:+ chr4:147594265:+ chr4:148488758-148515741:+ chr4:148515417:+ chr4:147824299,chr4:147824296 chr4:147569876,chr4:147569870 NA NA chr4:148745450,chr4:148745447 chr4:148491028,chr4:148491022 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none BAR_domain_of_APPL_family(40%)| BAR_3(63%)| 1 0 0 96 15 ENST00000336498.8 ENST00000509370.1 downstream upstream none GAAGAACCTCATCGCTGCGACGAAAA___GTCTGTgAGTGGCCCAGCGGAAGTTTGCTCATTCACTCAGAGACTTTAAGTTTGAGTTTATCGGTGATGCTGTGA...TTACGTGAATTTTCAAATTTTTTGAAGAATCTGGAGGAACAGAGAGAAATTATG|GAGCTCCCTCTGCTGCAGGAACTCAACGATAGGGAGGAAGAGcCCAG LREFSNFLKNLEEQREIM|elpllqelndreeep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4799 chr4:147782595-147782668:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23026 ENSG00000291215::ENSG00000272438 ENSG00000291215.1::ENSG00000272438.1 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000291215 ENSG00000291215.1 lncRNA - - chr1:725885-778688:- chr1:733307:- chr1:661265-714068:- chr1:668687:- ENSG00000272438 ENSG00000272438.1 lncRNA + - chr1:904834-915976:+ chr1:908382:- chr1:840214-851356:+ chr1:843762:- NA NA NA NA NA NA NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 4 4 5 773 50 ENST00000506640.3 unknown upstream downstream duplicates(2),mismatches(1) GCCCAACTAACATTTGGAATTTTCGTATACGTGGATTCCAGAGGGGTGACAGCGAAAC___GTGGGACCATCCAGTTGCAGGAAAACAAGCTTAACACGCCCACTGATTCTACATTATG|GGAAACTTCCAAAGAACTGGCTGTGGCGGACACCCTATCTTTCTGGCTCTGTGACCTTCCCCTTCCAGCTGCTGCCCCCACCAGCCTGCACCCCTGTTCTGAGAGGCCATCCGCACCTCTCGGTGCCTGCCCTCCTGCCCGCCCTCCTGTGGGCCTGGCCTGCTCCACACCTGCTGTCCACGAGGAGGACCGGCTTGTGCTGCCCTCCGACTTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23029 NUP50::A4GALT ENSG00000093000.19::ENSG00000128274.17 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NUP50 ENSG00000093000.19 protein_coding + + chr22:45163925-45188017:+ chr22:45181367:+ chr22:45559806-45583898:+ chr22:45577248:+ A4GALT ENSG00000128274.17 protein_coding - - chr22:42692121-42721298:- chr22:42695631:- chr22:43088127-43117304:- chr22:43091637:- chr22:45183332 chr22:42711290 NA NA chr22:45579213 chr22:43107296 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none NUP50_(Nucleoporin_50_kDa)(100%),RanBP1_domain(9%)|Alpha_1_4-glycosyltransferase_conserved_region(100%),Glycosyltransferase_sugar-binding_region_containing_DXD_motif___(100%) NUP50(100%),Ran_BP1(0%)|Gb3_synth(100%),Gly_transf_sug(100%) 2 4 3 265 27 ENST00000347635.9 ENST00000642412.2 downstream downstream duplicates(3),mismatches(4) TTGGAGGGCCAAGCAGAAGGTGACAGTGGTGAATGCAAAG___GTGGAGATGAAGAAGAGAATGATGAGCCACCCAAAGTAGTAGTTACCGAAGTAAAAGAAGAAGAcGCTTTTTACTCCAAAAA|ATGGATTTGCAGCCGCTGCAAGTGTGTGGAAGGGCCGTGTTCGTGTTGGCAAAGAAGGTCGGCTGCTGAGCCAGGGCGTGTCTCCCGGAGGCCTGTGGGCTGCCAGGATCCCCACCTCTCTGCAATGGGCTGCCCAGGCTG___ACCAGCCGGTTCCTGCTGGAAGCTCCTGGTCTGATCTGGGGATACCATGTCCAAGCCCCCCGACCTCCTGCTGCGGCTGCTCCGGGGCGCCCCAAGGCAGCGGGTCTGCACCCTGTTCATCATCGGCTTCAAGTTCACGTTTTTCGTCTCCATCATGATCTACT LEGQAEGDSGECKGGDEEENDEPPKVVVTEVKEEDAFYSKk|wicsrckcvegpcscwqrrsaaepgrvsrrpvgcqdphlsamgcpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23031 SIRT3::SIGIRR ENSG00000142082.15::ENSG00000185187.13 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3914 TRUE 1476 SIRT3 ENSG00000142082.15 protein_coding - - chr11:215030-236931:- chr11:230452:- chr11:215030-236931:- chr11:230452:- SIGIRR ENSG00000185187.13 protein_coding - - chr11:405716-417455:- chr11:410027:- chr11:405716-417455:- chr11:410027:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Sir2_family(68%)|TIR_domain(100%) SIR2(33%)|TIR(100%),TIR_2(100%) 1 1 6 51 101 ENST00000382743.9 ENST00000332725.7 upstream downstream duplicates(1),mismatches(1) GTGGTCATGGTGGGGGCCGGCATCAGCACACCCAGTGGCATTCCAGACTTCAG___ATCGCCGGGGAGTGGCCTGTACAGCAACCTCCAGCAGTACGATCTCCC...TCCGGCTGCTTCATGACAAGGGGCTGCTTCTGCGGCTCTACACGCAGAACATCGATGGGCTTGAGAGAG___TGTCGGGCATCCCTGCCTCAAAGCTGGTTGAAGCTCATGGAACCTTTGCCTCTGCCACCTGCACAGTCTGCCAAAGACCCTTCCCAGGGGAGGACATTCGG|CCTCTGACCTGTCCAGGTGCCCTGTCCAGCTGACTGCAAGGACAGAGAGGAGTCCTGCCCAGCTCTTGGATCAGTCTGCTGGCCGAGGAGCCCGGTGGAGCCAGGGGTGACCCTGGAGCCCAGCCTGCCCCGAGGAGGCCCCGGCTCAGAGCCATGCCAG___GTGTCTGTGATAGGGCCCCTGACTTCCTCTCCCCGTCTGAAGACCA RLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIR|pltcpgalss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23032 SIRT3::SIGIRR ENSG00000142082.15::ENSG00000185187.13 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 3914 TRUE 1476 SIRT3 ENSG00000142082.15 protein_coding - - chr11:215030-236931:- chr11:236048:- chr11:215030-236931:- chr11:236048:- SIGIRR ENSG00000185187.13 protein_coding - - chr11:405716-417455:- chr11:407164:- chr11:405716-417455:- chr11:407164:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Sir2_family(0%)|TIR_domain(69%) SIR2(0%)|TIR(63%),TIR_2(62%) 0 1 0 37 99 ENST00000382743.9 ENST00000526395.5 upstream downstream none CCGGAGGCAGCCGAGGGCAGCAGCTCCCAGTTTCTTCTTTTCGAG|AGCCCTCCGCCGACCTCTTGGTGAACCTGAGCCGCTGCCGACGCCTCATCGTGGTG...CAGCTTCCG___ACTCCTTCCTCCGATTTTTGGAAAGAAGTGCAGCTGGCGCTGCCGCGGAAGGTGCgGTACAGGCCgGTGGAAGGAGACCCCCAGACGCAGC RRQPRAAAPSFFFSr|alrrplgepeplptphrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23035 SLC9A7::LINC01545 ENSG00000065923.10::ENSG00000204904.7 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC9A7 ENSG00000065923.10 protein_coding - - chrX:46599251-46759118:- chrX:46758705:- chrX:46458686-46618553:- chrX:46618140:- LINC01545 ENSG00000204904.7 lncRNA - - chrX:46887417-46899703:- chrX:46894581:- chrX:46746852-46759138:- chrX:46754016:- chrX:46750996,chrX:46751000 chrX:46896156,chrX:46896157 NA NA chrX:46610431,chrX:46610435 chrX:46755591,chrX:46755592 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Sodium/hydrogen_exchanger_family(6%)| Na_H_Exchanger(0%)| 2 1 2 46 7 ENST00000616978.5 ENST00000377879.7 upstream downstream none TGGGGGCTGCGAGTCGCGGCCGCGGCCTCGGCCTCCTCCTCTGGGGCGGCGGCcGAGGACAGCAGCGCCATGGAGGAGCTCGCTACTGAGAAGGAGGCGGAGGAGAGCCACCGGCAAGACAGCGTGAGCCTGCTCACCTTCATCCTGCTGCTCACGCTCACCATCCTCACCATCTGGCTCTTCAAGCACCGCCGGGTGCGCTTTCTGCACGAGACCGGGCTGGCCATGATCTATG|TGTATAGGATGTACAGGATGAAAAGATCCCAAGTGAGGACCCCAATCAGGAGGCTGAT___AAGGAATGTTAATCTGGATTGGGAAGATTCCATGGCACTAGGCTGTACCACAGTCATAGAAAGAGGAA WGLRVAAAASASSSGAAAEDSSAMEELATEKEAEESHRQDSVSLLTFILLLTLTILTIWLFKHRRVRFLHETGLAMIY|vyrmyrmkrsqvrtpirrlirnvnldwedsmalgcttvierg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23037 PNPLA3::SHISAL1 ENSG00000100344.11::ENSG00000138944.8 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PNPLA3 ENSG00000100344.11 protein_coding + + chr22:43923792-43964488:+ chr22:43928889:+ chr22:44319672-44360368:+ chr22:44324769:+ SHISAL1 ENSG00000138944.8 protein_coding - - chr22:44243665-44312951:- chr22:44300977:- chr22:44639545-44708831:- chr22:44696857:- chr22:43930667,chr22:43930666 chr22:44304246,chr22:44304247 NA NA chr22:44326547,chr22:44326546 chr22:44700126,chr22:44700127 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Patatin-like_phospholipase(91%)| Patatin(55%)| 2 0 2 46 9 ENST00000216180.8 ENST00000381176.5 downstream downstream none AAAATAGGCATCTCTCTTACCAGAGTGTCTGATGGGGAAAACGTTCTGGTGTCTGACTTTCGGTCCAAAGACGAAGTCGTGGAT___GCCTTGGTATGTTCCTGCTTCATgCCtTTCTACAGTGGCCTTATCCCTCCTTCCTTCAGAGGCGTG|GCAGCTCTGGACGGATCAATGCAAGCCAG KIGISLTRVSDGENVLVSDFRSKDEVVDALVCSCFmPFYSGLIPPSFRGV|aaldgsmqa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23038 PDGFB::SCUBE1 ENSG00000100311.17::ENSG00000159307.20 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDGFB ENSG00000100311.17 protein_coding - - chr22:39223359-39244982:- chr22:39235778:- chr22:39619364-39640987:- chr22:39631783:- SCUBE1 ENSG00000159307.20 protein_coding - - chr22:43197280-43343372:- chr22:43212592:- chr22:43593286-43739378:- chr22:43608598:- chr22:39234476,chr22:39234484 chr22:43213216,chr22:43213221 NA NA chr22:39630481,chr22:39630489 chr22:43609222,chr22:43609227 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Platelet-derived_growth_factor__N_terminal_region(45%)|CUB_domain(100%),Calcium-binding_EGF_domain(0%),Tyrosine-protein_kinase_ephrin_type_A/B_receptor-like_(66%) PDGF_N(67%)|CUB(100%),Ephrin_rec_like(66%) 0 1 2 21 8 ENST00000331163.11 ENST00000360835.9 upstream downstream none CCGGAGTCGGCATGAATCGCTGCTGGGCGCTCTTCCTGTCTCTCTGCTGCTACCTGCGTCTGGTCAGCGCCGAG___GGGGACCCCATTCCCGAGGAGCTTTATGAGATGCTGAGTGACCACTCGATCCGCTCCTTTGATGATCTCCAACGCCTGCTGCACGGAGACCCCGGAG|GCCAGTGTTCTCCAGGCTTCTTCTCGGCCGATGGCTTCAAGCCCTGCCAGGCCTGCCCCGTGGGCACGTACCAGCCTGAGCCCGGGCGCACCGGCTGCTTCCCCTGTGGAGGGGGTTTGCTCACCAAACACGAAGGCACCACCTCCTTCCAGGACTGCGAGGCTAAAG___TGCACTGCTCCC MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPG|gQCSPGFFSADGFKPCQACPVGTYQPEPGRTGCFPCGGGLLTKHEGTTSFQDCEAKVHCS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) 1 DFSP mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23045 HECTD4::WIPF2 ENSG00000173064.14::ENSG00000171475.14 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112254718:- chr12:112597992-112820243:- chr12:112692522:- WIPF2 ENSG00000171475.14 protein_coding + - chr17:40219304-40284136:+ chr17:40280016:- chr17:38375556-38440388:+ chr17:38436268:- NA NA NA NA NA NA NA NA sense antisense unknown intron 3'UTR translocation/5'-5' medium none none none 4 3 6 7 60 unknown unknown upstream downstream mismatches(1) GAAATAATAAGCATTCAGGGCTGAAGATAGAGCTACTAAATCTGAACTTAGATGCAGTGAGAAGCAGTCAGAGCGCACATTAGAAGACAGGGTTTGGTATTTACAGAAGCCAGAGCTTTATTTTTCCTATGGAAGTCTTTGAATGCCAAATGAGCTATAAATGTTTCTTCTGCCGATTAGAAAGTCAGCCAGCTGGTTATAAATGAATTAGAGAAATATTGATACATGAAAACTGACCCAAGAAGCAGCAGCCCCCTTTCTGGCCCAAATTTGTATCATTTTCTTT|ACACATTACCCCCGTTGAGCCCTCCCTCACCTAGCACTGGGGAGACTTGGGTTTCACCTGGCACCATGCACAGATCCCTAGCCTGTGATCCAATCAACTGGAAAGGTCTCTAAGACAGTTTAAGCCTGTGATGTGTGTG...TTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTGGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGTGATTAAATTTTTAAGCTAATTTTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23056 CPT1A::TPCN2 ENSG00000110090.13::ENSG00000162341.18 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3918 TRUE 1477 CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68780640:- chr11:68522088-68611878:- chr11:68548108:- TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69057578:+ chr11:68816400-68903784:+ chr11:68825046:+ chr11:68778257,chr11:68778259 chr11:69054395,chr11:69054393 NA NA chr11:68545725,chr11:68545727 chr11:68821863,chr11:68821861 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Carnitine_O-palmitoyltransferase_N-terminus(100%),Choline/Carnitine_o-acyltransferase(53%)|Ion_transport_protein(89%) CPT_N(100%),Carn_acyltransf(50%)|Ion_trans(90%) 2 0 1 387 446 ENST00000376618.6 ENST00000637504.1 upstream upstream none CTCTTGATGCTGTGGAGAAAGCAGCGTTCTTcGTGACGTTAGATGAAACTGAAGAAGGATACAGAAGTGAAGACCCGGATACGTCAATGGACAGCTACGCCAAATCTCTACTACACGGCCGA...TGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAG|GGTTACCTGTTCGGGTGGGCCCATTTCCAGAAAAACCTTTGGCTGCTGGGCTACCTCGTG VVFKNGKMGLNAEHSWADAPIVAHLWE|GYLFGWAHFQKNLWLLGYL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3164 chr11:69083176-69083258:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23057 CPT1A::TPCN2 ENSG00000110090.13::ENSG00000162341.18 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 3918 TRUE 1477 CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68780640:- chr11:68522088-68611878:- chr11:68548108:- TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69054721:+ chr11:68816400-68903784:+ chr11:68822189:+ chr11:68778257,chr11:68778259 chr11:69054395,chr11:69054393 NA NA chr11:68545725,chr11:68545727 chr11:68821863,chr11:68821861 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Carnitine_O-palmitoyltransferase_N-terminus(100%),Choline/Carnitine_o-acyltransferase(53%)|Ion_transport_protein(100%) CPT_N(100%),Carn_acyltransf(50%)|Ion_trans(100%) 1 0 1 387 296 ENST00000376618.6 ENST00000637504.1 upstream upstream none TCACGTTTGTTGTCTTCAAAAACGGGAAGATGGGCCTCAACGCTGAACACTCCTGGGCAGATGCGCCGATCGTGGCCCACCTTTGGGAG|TACCGCTCCATCAACCACCGGGTGGATGCCAGCTCGATGTGGCTTTACCGACGGTATTAC TFVVFKNGKMGLNAEHSWADAPIVAHLWE|YRSINHRVDASSMWLYRRY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3164 chr11:69083176-69083258:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23066 NAA40::FGF12 ENSG00000110583.13::ENSG00000114279.15 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63953578:+ chr11:63706431-63724791:+ chr11:63721050:+ FGF12 ENSG00000114279.15 protein_coding - + chr3:192139390-192767764:- chr3:192547876:+ chr3:191857179-192485553:- chr3:192265665:+ chr11:63953808 chr3:192547739 NA NA chr11:63721280 chr3:192265528 NA NA sense antisense unknown intron intron translocation/5'-5' low none Acetyltransferase_(GNAT)_family(76%)| Acetyltransf_1(71%)| 0 0 4 11 3 unknown unknown downstream upstream none CCGATGCCTGTGCAGTCTGATCAGCCTGTGATGGGGGAAGCAGTGAGTGCTGTGTGGGGGTCCAAGACCTCCAGAGGCTAGAGGCCAAATTCAGGAACACTCGTGTGGGTGAAAGGGAGGTA...|...CATGTGCTGGGAGATAATACTCTGTTCCCTTACAAATGCTTCCCAAGTATTAGCTAGAAAATTTACTGGAGGCCTCTGTACATTCAGAATGTAGATGACTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23072 ENSG00000224481::LINC01731 ENSG00000224481.4::ENSG00000234283.1 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000224481 ENSG00000224481.4 lncRNA + + chr1:148295895-148344638:+ chr1:148303555:+ chr1:147768002-147816766:+ chr1:147775662:+ LINC01731 ENSG00000234283.1 lncRNA - - chr1:148271884-148280749:- chr1:148272035:- chr1:147744014-147752855:- chr1:147744165:- NA NA NA NA NA NA NA NA sense sense unknown intron exon/splice-site inversion low none none none 1 1 0 6 7 unknown ENST00000428035.1 downstream downstream none GCAAGATGCGCCTCTCAGGTTTTCCGAGGCTTTGGAGCCTGCACAATTGTTCTACAAAAGGCAGTAGCTCCGCCGAACGTTGGATCGTCCCTTGGTCTGGT...TACCAGAACGAGAGTTGACTGTGTGTCTCAGTCGGTTGGTATGCTTGCTTCCAAGCCTGGAG|GCACGAGGAAAGGCTATGGGAGCACAAAGCAAGAAAGTGGCCTTCTGCAAGCCAGGAAGAGAGGCCTCCCCAGAAACCAACTCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23081 SKIL::MECOM ENSG00000136603.15::ENSG00000085276.19 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3921 TRUE 1478 SKIL ENSG00000136603.15 protein_coding + + chr3:170357342-170396835:+ chr3:170361427:+ chr3:170075130-170114623:+ chr3:170079215:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169143834:- chr3:168801287-169381563:- chr3:168861622:- chr3:170364892,chr3:170364888 chr3:169304277,chr3:169304276 NA NA chr3:170082680,chr3:170082676 chr3:169022065,chr3:169022064 NA NA sense sense in-frame CDS/splice-site intron inversion high none SKI/SNO/DAC_family(100%),c-SKI_Smad4_binding_domain(100%)|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) Ski_Sno(100%),c-SKI_SMAD_bind(100%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 39 43 49 381 202 ENST00000465590.2 ENST00000651503.2 downstream downstream duplicates(1),low_entropy(2),mismatches(3) TGTTCAGCCTGATGCTCCGTGTATTCAATGTCTGGAGTGTTGTGGAATGTTTGCACCCCAGACGTTTGTGATGCATTCTCACAGATCACCTGACAAAAGAACTTGCCACTGGGGCTTTGAATCAGCTAAATGGCATTGCTATCTTCATGTGAACCAAAAATACTTAGGAACACCTGAAGAAAAGAAACTGAAGATAATTTTAGAAGAAATGAAGGAGAAGTTTAGCATGAGAAGTGGAAAGAGAAATCAATCCA|AGATCTTAGACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTCAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAGATAAATGATCAG___ATATTCTATAGAGTAGTTGCAGACATTGCGCCGGGAGAGGAGCTTCTGCTGTTCA VQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSGKRNQS|kILDEFYNVKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQIFYRVVADIAPGEELLLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 23082 SKIL::MECOM ENSG00000136603.15::ENSG00000085276.19 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3921 TRUE 1478 SKIL ENSG00000136603.15 protein_coding + + chr3:170357342-170396835:+ chr3:170361427:+ chr3:170075130-170114623:+ chr3:170079215:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169149757:- chr3:168801287-169381563:- chr3:168867545:- chr3:170364892,chr3:170364888 chr3:169304277,chr3:169304276 NA NA chr3:170082680,chr3:170082676 chr3:169022065,chr3:169022064 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none SKI/SNO/DAC_family(100%),c-SKI_Smad4_binding_domain(100%)|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) Ski_Sno(100%),c-SKI_SMAD_bind(100%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 1 2 51 381 7 ENST00000465590.2 ENST00000651503.2 downstream downstream mismappers(1),mismatches(3) GTTCAGCCTGATGCTCCGTGTATTCAATGTCTGGAGTGTTGTGGAATGTTTGCACCCCAGACGTTTGTGATGCATTCTCACAGATCACCTGACAAAAGAACTTGCCACTGGGGCTTTGAATCAGCTAAATGGCATTGCTATCTTCATGTGAACCAAAAATACTTAGGAACACCTGAAGAAAAGAAACTGAAGATAATTTTAGAAGAAATGAAGGAGAAGTTTAGCATGAGAAGTGGAAAGAGAAATCAATCCA|AGGTACATCTTCCAAGGTCTCGGAGGGTAAGCGTTCACTCTTGGTTGTATTTGGGGAAGAGAAGCTCAGACGTAGGAATAGC...___ATCTTAGACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGC?CAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAG VQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRSGKRNQS|kvhlprsrrvsvhswlylgkrssdvgi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 23083 TTLL7::ERI3 ENSG00000137941.17::ENSG00000117419.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2126 FALSE NA FALSE NA TTLL7 ENSG00000137941.17 protein_coding - - chr1:83865024-83999150:- chr1:83998931:- chr1:84330707-84464833:- chr1:84464614:- ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44221640:- chr1:44686742-44820932:- chr1:44687312:- chr1:83970576,chr1:83970583 chr1:44228422,chr1:44228426 NA NA chr1:84436259,chr1:84436266 chr1:44694094,chr1:44694098 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Exonuclease(4%) |RNase_T(0%) 32 67 31 113 899 ENST00000474957.5 ENST00000372257.7 upstream downstream duplicates(4),mismatches(27) AGGCACTCCGCGTCGAGCACCGGAGTCCCGAGCCGTGGCTGCCACGGGCGGTGGGCGGGCGGAGGAGAGCACCGGACCACCAGTGCAGGCTGCCGAGTCGGGGCGGCCGCCCACGGGGAAGCTGCGAGGCGCGGGAGCACCTGGGGGACCGCTTGCAGCGGGGACGCGAGGACCCGGGCTGGGCTTTCCTCACCCGG|ACGACTGCAAGAACATTGCCAACATCATGAAGACACTCGCCTATCGAGGCTTCATCTTCAAGCAGACATCGAAGCCGTTCTGATTGGCCGAGGACAGGATGGGGCAGGACAGGGTAGCTGTTTGGCCCAGCCCAGAATCCTCCTCTCCCTCACCAGAGGGGAAGAGGGAGAGTGGCATAGCTCTGTGTCCAGAGTGTCCCCAGCTGCCCTGTGGGCTCATGCCCTTGGCGTGGGCTTGTGCCCTTGCAAGGGCTTGGCCACTTGGCCCTTCTGGAGCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23084 BCAR3::GLMN ENSG00000137936.18::ENSG00000174842.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2127 TRUE 3922 TRUE 1479 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GLMN ENSG00000174842.17 protein_coding - - chr1:92246402-92298987:- chr1:92291537:- chr1:92711959-92764544:- chr1:92757094:- chr1:93769016,chr1:93769021 chr1:92291896,chr1:92291898 NA NA chr1:94234572,chr1:94234577 chr1:92757453,chr1:92757455 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Uncharacterised_protein_family__YAP/Alf4/glomulin(90%) |Kinetochor_Ybp2(87%) 36 38 33 275 169 ENST00000433544.1 ENST00000370360.8 upstream downstream duplicates(5),mismappers(1),mismatches(8) GGAGCGGTCAGGAGCATGCCTGGCTCCTGGTGCCTCTCTATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|GTCATCATCAAGAATATGGGCTGGAATCTCGTTGGTCCTGTTGTTCGATGCCTTTTGTGTAAAGATAAAGAGGATAGTAAAAGAAAAGTTTATTTTTTGATCTTTGATTTATTGGTAAAG___TTATGCAATCCAAAGGAATTATTGTTGGGTTTGCTTGAACTGATTGAAGAGCCCTCTGGAAAACAGATATCCCAAAGTATTCTTCTTTTGCTTCAGCCATTACAAACAG___TGATTCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23085 BCAR3::GLMN ENSG00000137936.18::ENSG00000174842.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3922 TRUE 1479 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GLMN ENSG00000174842.17 protein_coding - - chr1:92246402-92298987:- chr1:92290306:- chr1:92711959-92764544:- chr1:92755863:- chr1:93769016,chr1:93769021 chr1:92291896,chr1:92291898 NA NA chr1:94234572,chr1:94234577 chr1:92757453,chr1:92757455 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Uncharacterised_protein_family__YAP/Alf4/glomulin(83%) |Kinetochor_Ybp2(85%) 4 3 14 275 222 ENST00000433544.1 ENST00000370360.8 upstream downstream none GCTGGAGCGGTCAGGAGCATGCCTGGCTCCTGGTGCCTCTCTATGGAGAGCACCTCTGTGCCTCTCTGAGAGCACTCACAGCCAAAAGTACACAGCTGCCCCCAGGCTGAGAGTGCTTGATACACCCTTGAATCCCCTCTTATATGATGCCCCAGCCCAGGAGAGATAAAAGCATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|TTATGCAATCCAAAGGAATTATTGTTGGGTTTGCTTGAACTGATTGAAGAGCCCTCTGGAAAACAGATATCCCAAAGTATTCTTCTTTTGCTTCAGCCATTACAAACAG___TGATTCAGAAACTTCATAACAAGGCATATTCAATTGGATTAGCATTGTCTACCCTTTGGAATCAGCTATCTCTTCTTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23086 BCAR3::GLMN ENSG00000137936.18::ENSG00000174842.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3922 TRUE 1479 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93845567:- chr1:94027298-94312706:- chr1:94311123:- GLMN ENSG00000174842.17 protein_coding - - chr1:92246402-92298987:- chr1:92291537:- chr1:92711959-92764544:- chr1:92757094:- chr1:93769016,chr1:93769021 chr1:92291896,chr1:92291898 NA NA chr1:94234572,chr1:94234577 chr1:92757453,chr1:92757455 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Uncharacterised_protein_family__YAP/Alf4/glomulin(90%) |Kinetochor_Ybp2(87%) 0 3 1 59 169 ENST00000370244.5 ENST00000370360.8 upstream downstream none ATCAGGGTCTTGCATTCTTGGCACATCTAGGAAGAACGTGCAAGGATGCGAATTGTGAATCGCTTCTCCAAACA|GTCATCATCAAGAATATGGGCTGGAATCTCGTTGGTCCTGTTGTTCGATGCCTTTTGTGTAAAGATAAAGAGGATAGTAAAA...AAGTATTCTTCTTTTGCTTCAGCCATTACAAACAG___TGATTCAGAAACTTCATAACAAGGCATATTCAATTGGATTAGCATTGTCTACCCTTTGGAATCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23087 BCAR3::GLMN ENSG00000137936.18::ENSG00000174842.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3922 TRUE 1479 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GLMN ENSG00000174842.17 protein_coding - - chr1:92246402-92298987:- chr1:92286592:- chr1:92711959-92764544:- chr1:92752149:- chr1:93769016,chr1:93769021 chr1:92291896,chr1:92291898 NA NA chr1:94234572,chr1:94234577 chr1:92757453,chr1:92757455 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Uncharacterised_protein_family__YAP/Alf4/glomulin(62%) |Kinetochor_Ybp2(77%) 0 1 0 275 209 ENST00000433544.1 ENST00000370360.8 upstream downstream none ATCAGCACCATGAGATTCACCTGCCTCTGGTCGTTAG|TTGTTTCAAAAGCTTGAAATGCCCTTTGCTGACAGCACAATTCTTTGAACAGTCTGAAGAAGGTGGAAATGATCCTTTCAGGTATTTTGCATCAGAAATAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23089 COPS2::CLDN16 ENSG00000166200.15::ENSG00000113946.4 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA COPS2 ENSG00000166200.15 protein_coding - - chr15:49106068-49155661:- chr15:49155525:- chr15:49398265-49447858:- chr15:49447722:- CLDN16 ENSG00000113946.4 protein_coding + - chr3:190322541-190412138:+ chr3:190326620:- chr3:190040330-190129927:+ chr3:190044409:- chr15:49153065 chr3:190385205 NA NA chr15:49445262 chr3:190102994 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 79 1 802 161 ENST00000388901.10 unknown upstream downstream duplicates(6),low_entropy(1),mismatches(2) GCCAAGATGTCTGACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACCTG|ATTCTTGCAGATCTGTGGGAGTCATCTGATATCACATCGCCATTCTCCCTCTTGGCCAACCCCTCCTCAGAAGAAGCCCTCAGGCATTAGTCCTAACCAGGGAAACTATCCAGAGCTAGGAGGGAAAACATCGCAAGGCTTGGAGAGGGGACCTAGAAATCTCACTGAAAGCTCATACCCCTGCCATTGCTGC MSDMEDDFMCDDEEDYDL|iladlwessditspfsllanpsseealrh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23090 ERI3::HIVEP3 ENSG00000117419.16::ENSG00000127124.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44247939:- chr1:44686742-44820932:- chr1:44713611:- HIVEP3 ENSG00000127124.16 protein_coding - + chr1:41506365-42035925:- chr1:41891817:+ chr1:41972036-42501596:- chr1:42357488:+ chr1:44228678 chr1:41888691 NA NA chr1:44694350 chr1:42354362 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Exonuclease(95%)| RNase_T(80%)| 20 19 26 620 72 ENST00000372257.7 unknown upstream upstream duplicates(1),mismatches(3) GGGACTTAAAAGTCAT___GCTCCCAGGCCAGTGCCAGTACTTGGGCTTGCCAGTGGCGGATTACTTCAAGCAGTGGATTAATCTGAAAAAG___GCTTACAGCTTCGCCATGGGCTGCTGGCCCAAGAATGGACTTCTAGACATGAACAAGGGCCTCAGCCTGCAACACATAGGCCGGCCCCACAGCGGCATTG|TCACTTCTTCCCATGTCCTGATTTCATTGCTTGTGAAAAGAGATGGCCTTCCAATGGGAAAAGGCAAGGAGTAAAACTCACGAGAGAAAGCGTCCTGGAGATTTTAAGGAGAAAGGCACATCGGTTCTGCCAGCACAAGAGCTGCCTGTTTCCCTATCAGATATCAACACTCATTTAGTGCAAG DLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGI|vtsshvlisllvkrdglpmgkgke* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23093 APTX::NOL6 ENSG00000137074.20::ENSG00000165271.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3923 TRUE 1480 APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:32984631:- chr9:32886599-33025128:- chr9:32984629:- NOL6 ENSG00000165271.17 protein_coding - - chr9:33461353-33473930:- chr9:33464161:- chr9:33461351-33473928:- chr9:33464159:- chr9:32978839,chr9:32978846 chr9:33465057,chr9:33465061 NA NA chr9:32978837,chr9:32978844 chr9:33465055,chr9:33465059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FHA_domain(100%),Scavenger_mRNA_decapping_enzyme_C-term_binding(81%)|Nrap_protein_PAP/OAS1-like_domain_5(49%),Nrap_protein_domain_6(100%) DcpS_C(22%),FHA(100%),FHA_2(100%),HIT(22%)|Nrap_D5(38%),Nrap_D6(100%) 2 1 7 328 335 ENST00000436040.7 ENST00000297990.9 upstream downstream mismatches(1) CCATTGGCTGGTCTTACCGTGGACCTCCATTTCCAGTCTGAAGGCTGTGGCCAGGGAACACCTTGAACTCCTTAAGCATATGCACACTGTGGGGGAAAAGGTGATTGTAGATTTTGCTGGGTCCAGCAAACTCCGCTTCCGATTGGGCTACCACGCCATTCCGAGTATGAG|TGGAGGAGCAGGTGGAGATCCGCAGTGGCTTCCTGGCAGCTCGGGCACAGCTCCCCGTCATGGTCATTGTTACCCCCCAAGACCGCAAAAACTCTGTGTGGACACAGGATGGACCCTCAGCCCAG___ATCCTGCAGCAGCTTGTGGTCCTGGCAGCTGAAGCCCTGCCCATGTTAGAGAAG HWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMs|ggaggdpqwlpgssgtaprhghcypprpqklcvdtgwtlspdpaaacgpgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 33001565|32997241 FALSE|FALSE 33472410|33472410 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23094 APTX::NOL6 ENSG00000137074.20::ENSG00000165271.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3923 TRUE 1480 APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:32984631:- chr9:32886599-33025128:- chr9:32984629:- NOL6 ENSG00000165271.17 protein_coding - - chr9:33461353-33473930:- chr9:33463920:- chr9:33461351-33473928:- chr9:33463918:- chr9:32978839,chr9:32978846 chr9:33465057,chr9:33465061 NA NA chr9:32978837,chr9:32978844 chr9:33465055,chr9:33465059 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none FHA_domain(100%),Scavenger_mRNA_decapping_enzyme_C-term_binding(81%)|Nrap_protein_PAP/OAS1-like_domain_5(22%),Nrap_protein_domain_6(100%) DcpS_C(22%),FHA(100%),FHA_2(100%),HIT(22%)|Nrap_D5(25%),Nrap_D6(100%) 1 2 5 328 363 ENST00000436040.7 ENST00000297990.9 upstream downstream none CCATTGGCTGGTCTTACCGTGGACCTCCATTTCCAGTCTGAAGGCTGTGGCCAGGGAACACCTTGAACTCCTTAAGCATATGCACACTGTGGGGGAAAAGGTGATTGTAGATTTTGCTGGGTCCAGCAAACTCCGCTTCCGATTGGGCTACCACGCCATTCCGAGTATGAG|ATCCTGCAGCAGCTTGTGGTCCTGGCAGCTGAAGCCCTGCCCATGTTAGAGAAGCAGCTCATGGATCCCCGGGGACCTGGGGACATCAGG___ACAGTGTTCCGGCCGCCCTTGGACATTTACGACGTGCTGATTCGCC HWLVLPWTSISSLKAVAREHLELLKHMHTVGEKVIVDFAGSSKLRFRLGYHAIPSMr|scsslwswqlkpcpc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 33001565|32997241 FALSE|FALSE 33472410|33472410 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23095 BRWD3::HMGN5 ENSG00000165288.11::ENSG00000198157.11 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2129 FALSE NA FALSE NA BRWD3 ENSG00000165288.11 protein_coding - - chrX:80669503-80809877:- chrX:80716157:- chrX:79925002-80065376:- chrX:79971656:- HMGN5 ENSG00000198157.11 protein_coding - - chrX:81113699-81201913:- chrX:81119817:- chrX:80369198-80457412:- chrX:80375316:- chrX:80715139 chrX:81120719 NA NA chrX:79970638 chrX:80376218 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none WD_domain__G-beta_repeat(100%)|HMG14_and_HMG17(94%) WD40(100%)|HMG14_17(72%) 26 12 15 103 113 ENST00000373275.5 ENST00000358130.7 upstream downstream duplicates(2),mismatches(1) GCAGAAGAGTGGTGGTCAATGAACTAAATAATGGGGTTAGTAG___GGTACAGGAAGAATGTCGAACTGCAAAAGGTGACATAGAAATCAGTCTTTATACAGTTGAAAAGAAGAAAAAGCCATCTTACACTACTCAAAGG|GCTGCAGGTCAAGGTGATATGAGGCAGGAG___CCAAAGAGAAGATCTGCCAGGTTGTCTGCT___ATGCTTGTGCCAGTTACACCAGAGGTGAAGCCTAAAAGAACATCAAGTTCAAGG___AAAA RRVVVNELNNGVSRVQEECRTAKGDIEISLYTVEKKKKPSYTTQR|AAGQGDMRQEPKRRSARLSAMLVPVTPEVKPKRTSSSRK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23096 CCPG1::SHC4 ENSG00000260916.8::ENSG00000185634.12 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2130 TRUE 3924 TRUE 1481 CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55408221:- chr15:55632230-55700708:- chr15:55700419:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48890811:- chr15:49115938-49256116:- chr15:49183008:- chr15:55402593,chr15:55402601 chr15:48895764,chr15:48895769 NA NA chr15:55694791,chr15:55694799 chr15:49187961,chr15:49187966 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(82%),SH2_domain(100%) |PID(31%),SH2(100%) 3 47 3 252 131 ENST00000310958.10 ENST00000332408.9 upstream downstream inconsistently_clipped(2),mismatches(6) GGTTGTTTTTATAAGAGGCGTCATTGGCGCCCGAGCTGTGACCGCCGCCACTGGGGCAGCCAGCACAATCGGGCGGAGGTGGCGCTGCCCCTTCAG|GGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAG___CCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCACATTGATGAATCTTGACAACCAACAG___ATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCT___GATACTACAGACTATGTTGCCTACGTAGCTAAAGATCCAGTTAATCAACGAG___CCTGTCACATATTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23097 CCPG1::SHC4 ENSG00000260916.8::ENSG00000185634.12 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3924 TRUE 1481 CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55407847:- chr15:55632230-55700708:- chr15:55700045:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48890811:- chr15:49115938-49256116:- chr15:49183008:- chr15:55402593,chr15:55402601 chr15:48895764,chr15:48895769 NA NA chr15:55694791,chr15:55694799 chr15:49187961,chr15:49187966 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(82%),SH2_domain(100%) |PID(31%),SH2(100%) 1 0 5 37 131 ENST00000569205.5 ENST00000332408.9 upstream downstream mismatches(1) CGCGAGTGCACAGCTCCGGAGGCCCGAGCCGACCCTGGGGCGTCCGGTCCGGTGGTCTTGCAGCCTCCAAACCCCGAGTGCTATACCGAACTGCGCGCCAAGGGTGGGAGAGCTGACGGCCTGGGCCACCCTTCTTCCTTCA...AGGCTTTGAGGTGCTTGTCGGTCTGGACTGATGAAAATCCATATG|GGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAG___CCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23098 CCPG1::SHC4 ENSG00000260916.8::ENSG00000185634.12 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3924 TRUE 1481 CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55408221:- chr15:55632230-55700708:- chr15:55700419:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48884367:- chr15:49115938-49256116:- chr15:49176564:- chr15:55402593,chr15:55402601 chr15:48895764,chr15:48895769 NA NA chr15:55694791,chr15:55694799 chr15:49187961,chr15:49187966 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Phosphotyrosine_interaction_domain_(PTB/PID)(68%),SH2_domain(100%) |PID(25%),SH2(100%) 0 1 2 252 178 ENST00000310958.10 ENST00000332408.9 upstream downstream mismatches(1) CCGGTCACCGCCTGCCGGCTGCAGACGCCTGCGAGCAGGTTGTTTTTATAAGAGGCGTCATTGGCGCCCGAGCTGTGACCGCCGCCACTGGGGCAGCCAGCACAATCGGGCGGAGGTGGCGCTGCCCCTTCAG|CCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCACATTGATGAATCTTGACAACCAACAG___ATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCT___GATACTACAGACTATGTTGCCTACGTAGCTAAAGATCCAGTTAATCAACGAG___CCTGTCACATATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23100 ADAM10::LINC02885 ENSG00000137845.15::ENSG00000286592.2 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM10 ENSG00000137845.15 protein_coding - - chr15:58588809-58749791:- chr15:58610297:- chr15:58881008-59041990:- chr15:58902496:- LINC02885 ENSG00000286592.2 lncRNA - + chr22:34756676-35002862:- chr22:34897116:+ chr22:35152667-35398852:- chr22:35293107:+ chr15:58605401,chr15:58605403 chr22:34896261,chr22:34896259 NA NA chr15:58897600,chr15:58897602 chr22:35292252,chr22:35292250 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Disintegrin(100%),Metallo-peptidase_family_M12B_Reprolysin-like(100%),Reprolysin_family_propeptide(100%)| Disintegrin(100%),Pep_M12B_propep(100%),Reprolysin(100%),Reprolysin_2(100%),Reprolysin_3(100%),Reprolysin_4(100%),Reprolysin_5(100%)| 10 16 9 459 146 ENST00000260408.8 unknown upstream upstream duplicates(3),mismatches(2) TGCCAGTACAGGGTCTGTGCAGTGGAGTAGGCACTTCAGTGGTCGAACCATCACCCTGCAACCTGGATCCCCTTGCAACGATTTTAGAGGTTACTGTGATGTTTTCATGCGGTGCAGATTAGTAGATGCTGATGGTCCTCTAGCTAGGCTTAAAAAAGCAATTTTTAGTCCAGAGCTCTATGAAAACATTGCTGAATGGATTGTG|ACCCAACACAGAGAATACAAGCTTCCCCAGGGCATGAAAAGAGACAGAGACTGAGAAGGAGACATAAACATAAACCTAGCGGCACAGACACACAAACACTCTCAACAACAGGAAACTCAGAGGGATGGCACATTAGAGATACATTGAAGGAAGCAATATTGTCCATGGAAACCAG ASTGSVQWSRHFSGRTITLQPGSPCNDFRGYCDVFMRCRLVDADGPLARLKKAIFSPELYENIAEWIV|tqhreyklpqgmkrdrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23105 PRKACB::HIVEP3 ENSG00000142875.21::ENSG00000127124.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3926 TRUE 1482 PRKACB ENSG00000142875.21 protein_coding + + chr1:84078062-84238498:+ chr1:84078371:+ chr1:84543745-84704181:+ chr1:84544054:+ HIVEP3 ENSG00000127124.16 protein_coding - - chr1:41506365-42035925:- chr1:41849089:- chr1:41972036-42501596:- chr1:42314760:- chr1:84157819,chr1:84157820 chr1:41888062,chr1:41888227 NA NA chr1:84623502,chr1:84623503 chr1:42353733,chr1:42353898 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%) 15 8 3 101 31 ENST00000370689.6 ENST00000489103.5 downstream downstream mismatches(2) GCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCCGGTGCTAAGGAGTTCGCTGGAGCCCTTTCCTCAGACCCGGCCCGGTCTTCGCGCCCGGACTCCTGGCGCCAGCGCTAGGCGCACTCACCGCTCTGACGGGTGCAGACGCGGGAGTTGTCCCAGACTGTGGAGTGGCGGGCACGGCCCCAGCCCCCCTTCCCTTCCCTGACCCCTTCTTGCCATCGCCCCAGACATGGGGAACGCGGCGACCGCCAAGAAAGGCAGCGAGGTGGAGAGCG|TCTGGTGTCTCGGATTTGTTCCTGTGTTGCCCACTCCTGCTGGATCTTGTCCAGTCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCAGAGGTTGAGGACACTGGTGCTTGAAGGGAAACTGGCACACTCTGGAGCCCCAAGA MGNAATAKKGSEVES|vwclgfvpvlptpagscpvegqts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE cAMP-dependent protein kinase catalytic subunit beta AGC PKA P22694 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23106 PRKACB::HIVEP3 ENSG00000142875.21::ENSG00000127124.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3926 TRUE 1482 PRKACB ENSG00000142875.21 protein_coding + + chr1:84078062-84238498:+ chr1:84078371:+ chr1:84543745-84704181:+ chr1:84544054:+ HIVEP3 ENSG00000127124.16 protein_coding - - chr1:41506365-42035925:- chr1:41865615:- chr1:41972036-42501596:- chr1:42331286:- chr1:84157819,chr1:84157820 chr1:41888062,chr1:41888227 NA NA chr1:84623502,chr1:84623503 chr1:42353733,chr1:42353898 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%) 1 0 3 101 8 ENST00000370689.6 ENST00000479350.1 downstream downstream none TAAGGAGTTCGCTGGAGCCCTTTCCTCAGACCCGGCCCGGTCTTCGCGCCCGGACTCCTGGCGCCAGCGCTAGGCGCACTCACCGCTCTGACGGGTGCAGACGCGGGAGTTGTCCCAGACTGTGGAGTGGCGGG...CCCAGCCCCCCTTCCCTTCCCTGACCCCTTCTTGCCATCGCCCCAGACATGGGGAACGCGGCGACCGCCAAGAAAGGCAGCGAGGTGGAGAGCG|AGCTCATCCAGTTTCCCCACATTATTTCCAGTGGAGGACCCAGC MGNAATAKKGSEVES|eliqfphiissggp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE cAMP-dependent protein kinase catalytic subunit beta AGC PKA P22694 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23109 PIGB::DNAJC13 ENSG00000069943.10::ENSG00000138246.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIGB ENSG00000069943.10 protein_coding + + chr15:55318960-55355648:+ chr15:55319413:+ chr15:55611158-55647846:+ chr15:55611611:+ DNAJC13 ENSG00000138246.17 protein_coding + + chr3:132417502-132539032:+ chr3:132434538:+ chr3:132136346-132257876:+ chr3:132153382:+ chr15:55320151,chr15:55320152 chr3:132422999,chr3:132422997 NA NA chr15:55612349,chr15:55612350 chr3:132141843,chr3:132141841 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |DnaJ_domain(100%),GYF_domain_2(100%) |DnaJ(100%),GYF_2(100%),RME-8_N(100%) 12 2 6 175 115 ENST00000565367.5 ENST00000260818.11 downstream upstream duplicates(1),mismatches(3) GCAGCGCGCTACTGCAGCTTTCTTCCGCCTTAGGAAGGTGGCGGCCAGGGATGAGGAGGCCCCTAAGCAAGTGCGGAATGGAGCCGGGGGGCGGAGATGCCAGCCTCACTTTGCATGGTCTCCAGAACCGCTCCCACGGCAAGATAAAGCTGCGAAAGAGAAAGTCTACCTTGTACTTCAACACCCAGGAGAAGAGCGCCAGGCGCCGCGGGG|GTTTGAGCACAAAATGAACATAATTAGGGAAAATAAGGATCTGGCATGTTTCTACACAACAAAACATTCATGGAGGGGGAA___GTATAAGCGTGTCTTTTCAGTTGGAACTCATGCGATTACTACAT MRRPLSKCGMEPGGGDASLTLHGLQNRSHGKIKLRKRKSTLYFNTQEKSARRRG|glstk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23110 DNAJC13::PIGB ENSG00000138246.17::ENSG00000069943.10 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3928 TRUE 1483 DNAJC13 ENSG00000138246.17 protein_coding + + chr3:132417502-132539032:+ chr3:132417760:+ chr3:132136346-132257876:+ chr3:132136604:+ PIGB ENSG00000069943.10 protein_coding + + chr15:55318960-55355648:+ chr15:55324780:+ chr15:55611158-55647846:+ chr15:55616978:+ chr3:132422983,chr3:132422983 chr15:55320594,chr15:55320591 NA NA chr3:132141827,chr3:132141827 chr15:55612792,chr15:55612789 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none |Alg9-like_mannosyltransferase_family(79%) |Glyco_transf_22(87%) 0 3 1 101 20 ENST00000260818.11 ENST00000164305.10 downstream upstream none CGGAGGGCGCCTCATCCCACTCTGGAAGCTGAGCCGGCGGCGGGAGGAGCTAGGGCTGGAGCCTCTCCAGCCTCCCGCGAAG|GGGGCCTGGGAAGTAAGGATGAAGCTTATAGCTCCCTATGCAGAGTAAACAGAAG___ATTTGGATTCCTAGACTTGCCCAAGCACTTCTGTC...AATGAAGCAACTAGAAAATCAGGAAGTGGCAAGATGGGTG___TTTTTTTGCCAGTTGTGCTCCTGGTTCACATGGTATTGCTGTACCAGAACCCTTACAAACA...AATACTCATCCCTGGTGGCACTTGCCTTCATAATTCGTCCCACAGCTGTCATTCTGTGGACACCTTTGCTCTTCAGACATTTCTGTCAAGAACCAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23111 DNAJC13::PIGB ENSG00000138246.17::ENSG00000069943.10 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3928 TRUE 1483 DNAJC13 ENSG00000138246.17 protein_coding + + chr3:132417502-132539032:+ chr3:132417760:+ chr3:132136346-132257876:+ chr3:132136604:+ PIGB ENSG00000069943.10 protein_coding + + chr15:55318960-55355648:+ chr15:55327531:+ chr15:55611158-55647846:+ chr15:55619729:+ chr3:132422983,chr3:132422983 chr15:55320594,chr15:55320591 NA NA chr3:132141827,chr3:132141827 chr15:55612792,chr15:55612789 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Alg9-like_mannosyltransferase_family(79%) |Glyco_transf_22(79%) 0 1 1 101 86 ENST00000260818.11 ENST00000164305.10 downstream upstream none CGGAGGGCGCCTCATCCCACTCTGGAAGCTGAGCCGGCGGCGGGAGGAGCTAGGGCTGGAGCCTCTCCAGCCTCCCGCGAAG|ATTTGGATTCCTAGACTTGCCCAAGCACTTCTGTCTGCTGTAGCAGATGTGAGACTTTACTCATTAATGAAGCAACTAGAAAATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23112 DNAJC13::PIGB ENSG00000138246.17::ENSG00000069943.10 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3928 TRUE 1483 DNAJC13 ENSG00000138246.17 protein_coding + + chr3:132417502-132539032:+ chr3:132417760:+ chr3:132136346-132257876:+ chr3:132136604:+ PIGB ENSG00000069943.10 protein_coding + + chr15:55318960-55355648:+ chr15:55329724:+ chr15:55611158-55647846:+ chr15:55621922:+ chr3:132422983,chr3:132422983 chr15:55320594,chr15:55320591 NA NA chr3:132141827,chr3:132141827 chr15:55612792,chr15:55612789 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |Alg9-like_mannosyltransferase_family(70%) |Glyco_transf_22(72%) 1 0 1 101 68 ENST00000260818.11 ENST00000565367.5 downstream upstream none CGGAGGGCGCCTCATCCCACTCTGGAAGCTGAGCCGGCGGCGGGAGGAGCTAGGGCTGGAGCCTCTCCAGCCTCCCGCGAAG|TTTTTTTGCCAGTTGTGCTCCTG...TCTCACTATAATTGCTCTTTTCTACTATCCTTTGGAAGGTTCAAAGTCTATGAACAG___TGTCAAATACTCATCCCTGGTGGCACTTGCCTTCATAATTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23114 SVIL::PIP4K2A ENSG00000197321.16::ENSG00000150867.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2134 FALSE NA FALSE NA SVIL ENSG00000197321.16 protein_coding - - chr10:29457338-29736959:- chr10:29529705:- chr10:29746267-30025888:- chr10:29818634:- PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22609717:- chr10:22823783-23003507:- chr10:22898646:- chr10:29525253,chr10:29525258 chr10:22622258,chr10:22622260 NA NA chr10:29814182,chr10:29814187 chr10:22911187,chr10:22911189 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Phosphatidylinositol-4-phosphate_5-Kinase(100%) |PIP5K(100%) 3 6 6 164 58 ENST00000674475.1 ENST00000376573.9 upstream downstream duplicates(1) AAAAATCTTTTGATGAACAAAATGTTCCAAAGCGACGCTCAAGAAACACAGCTGTGGAGCAGAGGCTACGCCGTCTGCAGGACAGGTCCCTCACCCAGCCCATCACCACTGAAGAGGTGGTCATCGCAGCCAC|ATCAATGAACTGAGCCATGTTCAAATCCCTGTTATGTTGATGCCAGATGACTTCAAAGCCTATTCAAAAATAAAGGTGGACAATCACCTTTTTAACAA___AGAAAACATGCCGAGCCATTTCAAGTTTAAGGAATACTGCCCGATGGTCTTCCGTAACCTGCGGGAGAGGTTTGGAATTGATGATCAAGATTTCCAG___AATTCCCT KSFDEQNVPKRRSRNTAVEQRLRRLQDRSLTQPITTEEVVIAAt|smn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-604,hsa-mir-938 chr10:29545004-29545097:-,chr10:29602264-29602346:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23115 PRKCI::MECOM ENSG00000163558.13::ENSG00000085276.19 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2135 FALSE NA FALSE NA PRKCI ENSG00000163558.13 protein_coding + + chr3:170222424-170305977:+ chr3:170263429:+ chr3:169940212-170023765:+ chr3:169981217:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381524:- chr3:168801287-169381563:- chr3:169099312:- chr3:170267272,chr3:170267270 chr3:169486483,chr3:169486484 NA NA chr3:169985060,chr3:169985058 chr3:169204271,chr3:169204272 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none PB1_domain(100%)|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) PB1(100%)|zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%),zf-met(100%) 6 3 6 769 33 ENST00000295797.5 ENST00000651503.2 downstream downstream mismatches(3) GAGACCCGTGTACAGTATCATCTCAGTTGGAGTTAGAAGAAGCCTTTAGACTTTATGAGCTAAACAAGGATTCTGAACTCTTGATTCATG___TGTTCCCTTGTGTACCAGAACGTCCTGGGATGCCTTGTCCAGGAGAAGATA|ATAATGAGTGTGTATATGGCAACTACCCTGAAATACCTTTGGAAGAAATGCCAGATGCAGATGGAGTAGCCAGCACTCCCTCCCTCAATATTCAAGAGCCATGCTCTCCTGCCACATCCAGTGAAGCATTCACTCCAAAGGAGGGTTCTCCTTACAAAGCCCCCATCTACATC DPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPCPGED|nNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C iota type AGC PKC PKCi P41743 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 23117 MECOM::PRKCI ENSG00000085276.19::ENSG00000163558.13 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3929 FALSE NA MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169663336:- chr3:168801287-169381563:- chr3:169381124:- PRKCI ENSG00000163558.13 protein_coding + + chr3:170222424-170305977:+ chr3:170281882:+ chr3:169940212-170023765:+ chr3:169999670:+ chr3:169408987,chr3:169408990 chr3:170281588,chr3:170281585 NA NA chr3:169126775,chr3:169126778 chr3:169999376,chr3:169999373 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(73%) |PK_Tyr_Ser-Thr(90%),Pkinase(90%),Pkinase_C(100%) 0 7 1 44 774 ENST00000651503.2 ENST00000295797.5 upstream upstream none GAAGGAAAGGATCCAAGAAAAAAAAGCCCCAACCACACACCAGCGGCTGCAGGACTGGGCACAGCATGAGATCCAAAGGCAGGGCAAGGAAACTGGCCACAA|ATTGTTCTTTGTTATAGAGTATGTAAATGGAGGAGACCTAATGTTTCATATGCAGCGACAAAGAAAACTTCCTGAAGAACATGCCAG___ATTTTACTCTGCAGAAATCAGTCTAGCATTAAATTATCTTCATGAGCGAGGGATAATTTATAGAGATTTGAAACTGGACAATGTATTACTGGACTCTGAAGGCCACATTAAACTCACTGACTACGGCATGTGTAAG___GcAGGATTACGGCCAGGAGATACAACaAGCACTTTCTG...CATTGCTCCTGAAATTTTAAGAGGAGAAGATTATG___GTTTCAGTGTTGACTGGTGGGCTCTTGGAGTGCTCATGTTTGAGATGATGGCAGGAAGGTCTCCAT MRSKGRARKLAT|ncsll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C iota type AGC PKC PKCi P41743 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23118 PDSS1::MINDY3 ENSG00000148459.16::ENSG00000148481.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2136 FALSE NA FALSE NA PDSS1 ENSG00000148459.16 protein_coding + + chr10:26697701-26746798:+ chr10:26742577:+ chr10:26986630-27035727:+ chr10:27031506:+ MINDY3 ENSG00000148481.14 protein_coding - - chr10:15778170-15860507:- chr10:15847943:- chr10:15820169-15902506:- chr10:15889942:- chr10:26745301,chr10:26745301,chr10:26745301 chr10:15852932,chr10:15852975,chr10:15852981 NA NA chr10:27034230,chr10:27034230,chr10:27034230 chr10:15894931,chr10:15894974,chr10:15894980 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Polyprenyl_synthetase(100%)|Deubiquitinating_enzyme_MINDY-3/4__conserved_domain(98%) polyprenyl_synt(100%)|DUF4205(80%) 4 9 1 138 161 ENST00000376215.10 ENST00000277632.8 downstream downstream none CCTGATAGCCAACAGTTGTAAAGCA___GTCTCTGTTCTAGGATGTCCCGACCCAGTGGTGCATGAGATCGCCTATCAGTACGGAAAAAATGTAGGAATAGCTTTTCAG___CTAATAGATGATGTATTGGACTTCACCTCGTGTTCTGACCAGATGGGCAAACCAACATCAGCTGAT...GTTTGCCTGTCAGCAG___TTCCCAGAAATGAATGCTATGATCATGCGACGGTTCAGTTTGCCTGGAGATGTAGACAGAGCTCGACAGTATGTACTACAG|GGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAG___GCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTC...ACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTGGATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGA FACQQFPEMNAMIMRRFSLPGDVDRARQYVLQ|glclvnqrdlh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23121 PYGO1::MAPK6 ENSG00000171016.13::ENSG00000069956.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2138 FALSE NA FALSE NA PYGO1 ENSG00000171016.13 protein_coding - - chr15:55538884-55588947:- chr15:55587835:- chr15:55831082-55881145:- chr15:55880033:- MAPK6 ENSG00000069956.14 protein_coding + + chr15:51952106-52067375:+ chr15:52058633:+ chr15:52244303-52359572:+ chr15:52350830:+ chr15:55577723,chr15:55577726,chr15:55577736 chr15:52050137,chr15:52050134,chr15:52050136 NA NA chr15:55869921,chr15:55869924,chr15:55869934 chr15:52342334,chr15:52342331,chr15:52342333 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Protein_kinase_domain(27%) |PK_Tyr_Ser-Thr(0%),Pkinase(18%) 0 10 4 40 276 ENST00000563719.4 ENST00000691380.1 upstream upstream mismatches(2) GTCGGCCCGCGTCCCCACCGCCCTCGGCCGTGCCTCGGCTCCGAGGCTTGCCTCGCAGCCGCAGCGGCCCCGCGAGGAGGAGGAGCCGCCGCCGCAGCATCAAAGAGACCGAATTCCCGCGGCCTGGGGGGGAGTCATGCTTTGCGGTCTGTAATGTCAGCAGAACAGGAGAAGGATCCCATTTCGCTGAAGAGAGTTCGAG|GTGCACATGAACTTGAACAGATGCAGCTGATTTTAGAATCTATTCCTGTTGTACATGAGGAAGATCGTCAGGAGCTTCTCAGCGTAATTCCAGTTTACATTAGAAATGACATGACTGAGCCACACAAACCTTTAACTCAGCTGCTTCCAGGAATTAGTCGAGAAG___CACTGGATTTCCTGGAACAAATTTTGACATTTAGCCCCATGGATCGGTTAACAGCAGAAG MSAEQEKDPISLKRVR|gAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREALDFLEQILTFSPMDRLTAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase 6 CMGC MAPK ERK3 Q16659 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23122 KDM5B::MIER1 ENSG00000117139.18::ENSG00000198160.15 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3931 TRUE 1484 KDM5B ENSG00000117139.18 protein_coding - - chr1:202724495-202808487:- chr1:202808102:- chr1:202693623-202777615:- chr1:202777230:- MIER1 ENSG00000198160.15 protein_coding + + chr1:66924895-66988619:+ chr1:66984572:+ chr1:67390578-67454302:+ chr1:67450255:+ chr1:202798363,chr1:202798365 chr1:66983238,chr1:66983236 NA NA chr1:202767491,chr1:202767493 chr1:67448921,chr1:67448919 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none jmjN_domain(100%)| JmjN(100%)| 5 5 3 182 135 ENST00000367265.9 ENST00000401041.6 upstream upstream mismatches(1) CCCTTGCCCAGCCTGCGGTGATGGAGGCGGCCACCACACTGCACCCAGGCCCGCGCCCGGCGCTGCCCCTCGGGGGCCCGGGCCCGCTGGGCGAGTTCCTGCCTCCACCCGAGTGCCCGGTCTTCGAACCCAGCTGGGAAGAGTTCGCGGACCCCTTCGCTTTCATCCACAAGATCCGGCCCATAGCCGAGCAGACTGGCATCTGTAAGGTGCGGCCGCCGCCG|GAGTGTCATCTAATGGACCAGGTGAAATATTAAACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCATGCAGATATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGAC MEAATTLHPGPRPALPLGGPGPLGEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPP|echlmdqvky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23123 KDM5B::MIER1 ENSG00000117139.18::ENSG00000198160.15 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3931 TRUE 1484 KDM5B ENSG00000117139.18 protein_coding - - chr1:202724495-202808487:- chr1:202806977:- chr1:202693623-202777615:- chr1:202776105:- MIER1 ENSG00000198160.15 protein_coding + + chr1:66924895-66988619:+ chr1:66984572:+ chr1:67390578-67454302:+ chr1:67450255:+ chr1:202798363,chr1:202798365 chr1:66983238,chr1:66983236 NA NA chr1:202767491,chr1:202767493 chr1:67448921,chr1:67448919 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none jmjN_domain(100%)| JmjN(100%)| 0 1 3 1 135 ENST00000235790.9 ENST00000401041.6 upstream upstream none GGCCAACTCCTTCCTCCGTGGCCGGAACTGG|GAGTGTCATCTAATGGACCAGGTGAAATATTAAACAAAGAGGAAGTAAAAGTTGAAGGGTTACACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCATGCAGATATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23124 NMT2::PDE3A ENSG00000152465.18::ENSG00000172572.7 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2139 FALSE NA FALSE NA NMT2 ENSG00000152465.18 protein_coding - - chr10:15102584-15168693:- chr10:15168503:- chr10:15144583-15210692:- chr10:15210502:- PDE3A ENSG00000172572.7 protein_coding + + chr12:20368537-20688583:+ chr12:20556660:+ chr12:20521471-20841517:+ chr12:20709594:+ chr10:15145498,chr10:15145640,chr10:15145642 chr12:20456282,chr12:20456276,chr12:20456274 NA NA chr10:15187497,chr10:15187639,chr10:15187641 chr12:20609216,chr12:20609210,chr12:20609208 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |3'5'-cyclic_nucleotide_phosphodiesterase(100%) |PDEase_I(100%) 6 4 2 95 16 ENST00000378165.9 ENST00000359062.4 upstream upstream duplicates(1) CGGCCCGGCCCCGAGCACCGCCTCCCCAGCCAGCGCCGCCGCGATGGCGGAGGACAGCGAGTCTGCGGCCAGCCAGCAGAGCCTGGAACTGGACGACCAGGACACGTGCGGGATAGACGGGGACAATGAGGAGGAGACGGAGCACGCCAAAGG|CTCATGGGGCATTCAGAATGGGACCACAAACGAGGGCCAAGAGGATCACAG___TCTTCAGGAACCAGTATTACTGTGGACATCGCCGTCATGGGCGAGGCCCACGGCCTCATTACCGACCTCCTGGCAGACCCTTCTCTTCCACCAAACGTGTGCACATCCTTGAGAGCCGTGAGCAACTTGCTCAGCACACAGCTCACCTTCCAGGCCATTCACAAGCCCAGAGTGAATCCCGTtACTTCGCTCAGTGAAAAC MAEDSESAASQQSLELDDQDTCGIDGDNEEETEHAKg|swgiqngttnegqedhslqepvllwtspswarptaslptswqtllfhqtcahp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23128 NCKAP5::AFF3 ENSG00000176771.18::ENSG00000144218.21 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133517458:- chr2:133429361-134326034:- chr2:134275029:- AFF3 ENSG00000144218.21 protein_coding - + chr2:99545419-100192428:- chr2:100097237:+ chr2:100161881-100808890:- chr2:100713699:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 5 3 1 36 6 ENST00000409261.6 unknown upstream upstream none CACAGCCAGGCAGGAACAGGACATGACTATGGACAGGATAGTTGGTGCCTGACTCTGGGCTGCTCCAGAAATCCTATTTCCAAAATCTTTTCAGCTCTTAGCTGGCTTCCTACAGTGAGCTAGGATTTCAGTCCAACATTTAGGAAC...CAAAAATAAACAGAGGATAACCAACCGCGGGAGGAAATTTTTAGCTGGAGAGAGTTGTAGTTCCTGTGTCTGTCTCCAGGcCTGTGATATGTGTTGACTGA...AGGTTCATCGTGAAGAATAAATGAGATAAGCTACCTCAAGTGCCTGTACCAAAATAGACTCACAATACAT___TGACCCTGGAAACAGACGGGGGATTCTTATAAGTCACAAAAGAAAATAAATAACTTCATCCATGGAGGGAAAGAGACAGCTTGAGAAAAGGGACTTTGGAAAAAGGCTGTCTCTAGACAGCAGTCTTGTG|GTGAGTGGGGAAATTGCAGAGGAAAAATACACAAGTGAATACAATTAATGACTTCTGCACTCTTTGATTCCTGCTACCCTGTGAGGGGAATGATC MEGKRQLEKRDFGKRLSLDSSLV|vsgeiaeekytseyn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23130 ENSG00000246130::HOOK3 ENSG00000246130.1::ENSG00000168172.9 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000246130 ENSG00000246130.1 lncRNA + - chr8:23068229-23083619:+ chr8:23074610:- chr8:22925742-22941132:+ chr8:22932123:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43013051:+ chr8:42752089-42885678:+ chr8:42868194:+ chr8:23071362,chr8:23071368 chr8:43011717,chr8:43011711 NA NA chr8:22928875,chr8:22928881 chr8:42866860,chr8:42866854 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |HOOK_protein_coiled-coil_region(18%) |HOOK(9%) 1 2 3 30 45 unknown ENST00000307602.9 upstream upstream mismatches(1) AAGCAGGCTCCTCTTTCCTCTGCAGGGCACACACACCCTTAAAGCTGCCAGTTGACCCTGAACTGAGCAATCACTCAGAAGACCAGACATCAACTCAGACTTGTTCTCTCAGTCTGTGGCCTGGGATCTACTTCTGAG|GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATCAGCTCCAGGAACGAGACCGACTGTTCCACTCATTAGAG___AAAGAATATGAGAAAACAAAGAGTCAGAGAGAGATGGAAGAGAAATATATTGTTAGTGCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 23131 CHILL1::HOOK3 ENSG00000253616.5::ENSG00000168172.9 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHILL1 ENSG00000253616.5 lncRNA - - chr8:23071377-23074488:- chr8:23074436:- chr8:22928890-22932001:- chr8:22931949:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43013051:+ chr8:42752089-42885678:+ chr8:42868194:+ chr8:23071362,chr8:23071368 chr8:43011717,chr8:43011711 NA NA chr8:22928875,chr8:22928881 chr8:42866860,chr8:42866854 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |HOOK_protein_coiled-coil_region(18%) |HOOK(9%) 3 3 0 21 45 ENST00000520840.5 ENST00000307602.9 upstream upstream none CTCCCTCAAGCCAAGCtGGCTCCTCTTTCCTCTGCAGGGCACACACACCCTTAAAGCTGCCAGTTGACCCTGAACTGAGCAATCACTCAGAAGACCAGACATCAACTCAGACTTGTTCTCTCAGT...GGAAGaGGagTTAAATGAGCTCTCAGAGGCCTCCCAGCAGTGACCCAGAATGAG|GTCATCCGTACTTTAGATCCTAAACAGAATCAAGGAGCAGCACCAGAAATACAAGCTCTTAAAAATCAGCTCCAGGAACGAGACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 23133 CSTF3::ENSG00000289526 ENSG00000176102.13::ENSG00000289526.2 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3932 TRUE 1485 CSTF3 ENSG00000176102.13 protein_coding - - chr11:33077188-33162371:- chr11:33105567:- chr11:33098734-33183917:- chr11:33127113:- ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35056363:- chr11:35035622-35088739:- chr11:35077910:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none none TPR_6(100%)| 1 2 3 146 2 ENST00000524827.6 ENST00000685560.1 upstream downstream none CTTTGCACTGGATAAAATTGGAATGGAAATTATGTCCTATCAG___ATTTGGGTGGATTACATCAATTTCCTAAAAGGCGT___GGAAGCTGTAGGATCTTATGCAGAAAATCAAAGAATAACAGCTGTCCGAAGAGTTTATCAACGAGGTTGTGTTAATCCGATGATCAACATTGAACAGCTCTGGAGAGACTATAACAAGTATGAAGAG|CAATATTTAAATGATCCAGCTTCGACACATGCTCACCACATTTGGAAAAATCGAGGAGTGTTATTTAGATCCTGCCGGAGTTCCAG___TTTATCATCAAGTTATGTCAATGCTATCTCCAAAGTACATTATGAGCCCATCTATTTCTGTGCATCCCCACCAGCAGACC...ACTTTGACTAATGAAGAACTGCCTTTTAACAGAGTTAAAATTGACAGCACCATGGCCTCACACCCAACAGGGTTTGAGGCTGGACCCTTCTTTGACAAACG FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE|qylndpasthahhiwknrgvlfrscrssslsssyvnaiskvhyepiyfcasppad NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23134 CSTF3::ENSG00000289526 ENSG00000176102.13::ENSG00000289526.2 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3932 TRUE 1485 CSTF3 ENSG00000176102.13 protein_coding - - chr11:33077188-33162371:- chr11:33105567:- chr11:33098734-33183917:- chr11:33127113:- ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35030265:- chr11:35035622-35088739:- chr11:35051812:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none TPR_6(100%)| 2 0 2 146 1 ENST00000524827.6 ENST00000702237.1 upstream downstream none CTTTGCACTGGATAAAATTGGAATGGAAATTATGTCCTATCAG___ATTTGGGTGGATTACATCAATTTCCTAAAAGGCGT___GGAAGCTGTAGGATCTTATGCAGAAAATCAAAGAATAACAGCTGTCCGAAGAGTTTATCAACGAGGTTGTGTTAATCCGATGATCAACATTGAACAGCTCTGGAGAGACTATAACAAGTATGAAGAG|AACACACCCTTCAAAGTGCTAATGCTGTTCCAGCTCAGCAGACACCTCGTCTCGGGAAAGCCATTAGAAACCCCCAAAATACTACATTTTTCTCCTG___AGCTTTGAACCCTGAACCCAGCATTCTGAGAGTGGGAACCAGAAATGTGCATTTGAA FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE|ntpfkvlmlfqlsrhlvsgkpletpkilhfspel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23135 CSTF3::ENSG00000289526 ENSG00000176102.13::ENSG00000289526.2 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE FALSE FALSE NA TRUE 3932 TRUE 1485 CSTF3 ENSG00000176102.13 protein_coding - - chr11:33077188-33162371:- chr11:33105567:- chr11:33098734-33183917:- chr11:33127113:- ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35051712:- chr11:35035622-35088739:- chr11:35073259:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none TPR_6(100%)| 0 0 0 146 1 ENST00000524827.6 ENST00000685560.1 upstream downstream mismatches(1) TAAAAATTATGACAAGGTTGAAAAG___CTATTTCAGAGATGCCTTATGAAGGTTTTGCACATTGATTTATGGAAGTGTTATCTTTCATATGTCCGAGAAACCA...AGAGTTTATCAACGAGGTTGTGTTAATCCGATGATCAACATTGAACAGCTCTGGAGAGACTATAACAAGTATGAAGAG|TCTCCTTGCTGACAAAAAAGGA RVYQRGCVNPMINIEQLWRDYNKYEE|spc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23139 ITPK1::UNC79 ENSG00000100605.17::ENSG00000133958.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPK1 ENSG00000100605.17 protein_coding - - chr14:92936914-93116320:- chr14:93076595:- chr14:93403259-93582665:- chr14:93542940:- UNC79 ENSG00000133958.14 protein_coding + - chr14:93333219-93707876:+ chr14:93553268:- chr14:93799565-94174222:+ chr14:94019614:- chr14:93029299,chr14:93029306 chr14:93568764,chr14:93568768 NA NA chr14:93495644,chr14:93495651 chr14:94035110,chr14:94035114 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Inositol_1_3_4-trisphosphate_5/6-kinase_pre-ATP-grasp_domain(34%)| Ins134_P3_kin_N(31%)| 3 1 1 401 3 ENST00000267615.11 unknown upstream downstream none CCGCCGGGAGGAGGTGCCCACTCGCTCGCGGCGCGCGCCGGCCGCCAGACTCGGCCTGTGGGCGATTTCCTCCGGgCCCAGGgTCCC...GCAGACCTTTCTGAAAGGGAAGAGAGTTGGCTACTGGCTGAGCGAGAAGAAAATCAAGAAGCTGAATTTCCAGGCCTTCGCCGAGCTGTGCAG___GAAGCGAGGGATGGAGGTTGTGCAG|AGTCAAGAAAACTTTTTTCCCTTTTAAACCATTTACAACTTTTAACAATTGAGTAAACTACAACCTATAAGCAAAATTTTGAGCATGTTTCTTTCTCTCTACCTGATTTCTGCAGAATTTGGAAACTATAT___GAAAAAGAGCAATTCTTT QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQ|sqenffpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23142 CEP89::WDR88 ENSG00000121289.18::ENSG00000166359.11 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP89 ENSG00000121289.18 protein_coding - - chr19:32875925-32971991:- chr19:32966360:- chr19:33366831-33462897:- chr19:33457266:- WDR88 ENSG00000166359.11 protein_coding + - chr19:33132090-33175799:+ chr19:33149006:- chr19:33622996-33666705:+ chr19:33639912:- chr19:32965751,chr19:32966294,chr19:32965911,chr19:32966300,chr19:32966296,chr19:32966296 chr19:33156933,chr19:33157008,chr19:33156956,chr19:33157002,chr19:33157308,chr19:33157007 NA NA chr19:33456657,chr19:33457200,chr19:33456817,chr19:33457206,chr19:33457202,chr19:33457202 chr19:33647839,chr19:33647914,chr19:33647862,chr19:33647908,chr19:33648214,chr19:33647913 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 2 1 62 9 ENST00000305768.10 unknown upstream downstream none GTCCAGGCCCCGGTCCATTtTCCTCGCGCTGCAAGGATGCTCCTGGGATTTCGGAGAGGCCGCAGGAGTCATTTC___AAACACATCATCCATGGCCTTTTACC...GTGCCACGCACACCTCCTCCCCGCAGCCCCAACCCATCTCCAGAGAGACCAAG|TTTCACCAAATAAAGCAATGGAAGGTCACCGTCAGTCAGTGACAAGTGGCTATTCCTATGGCAGACTGAAGATACAGGGAGCCCGCACACCCTCACCTTTGATGACGGAAACGG VPRTPPPRSPNPSPERPs|ftk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE centrosomal protein 89kDa 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23143 MIR924HG::DTNA ENSG00000267374.3::ENSG00000134769.23 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39535458:- chr18:36786881-37380286:- chr18:37115422:- DTNA ENSG00000134769.23 protein_coding + - chr18:34493291-34891844:+ chr18:34820376:- chr18:32073255-32471808:+ chr18:32400340:- chr18:39274336,chr18:39274338 chr18:34826345,chr18:34826344 NA NA chr18:36854300,chr18:36854302 chr18:32406309,chr18:32406308 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 2 0 1 84 1 ENST00000670992.1 unknown upstream downstream mismatches(1) GCG___GGCACCGTTGAGCTGTTGCAACTGTTCTGCTG___GAGCCTTATGTATGTGGTTGAAACCACCTGTACTACTGGAATGAAAGCACCTTTACAGAAGAGGCAATGCAAGTTGTATTCATCACATGTGTAGAATGAATTAAGATTTATGCCAGTTGCAAAGAAGAATATTGGCTCACTATTTTTCCTCTGGGCAT|GACAGAGGCAGACCATGAAGAGTTTACATCACAGGCATGACAGCATCAGACCTGATTCTAGAAGGACTGCTCTCAC...AAGATGAGTGGAAGATTTTGCGGGAATCCAGGTGCAAGAAAGATGTTTCAGGTGTGGCTGAACACATCCAGTTAGAAGTGAAAATGGAACTTCAATCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-924,hsa-mir-5583-2 chr18:39622123-39622175:-,chr18:39676719-39676777:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23149 NCKAP5::RGPD6 ENSG00000176771.18::ENSG00000183054.13 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCKAP5 ENSG00000176771.18 protein_coding - - chr2:132671788-133568463:- chr2:133517458:- chr2:133429361-134326034:- chr2:134275029:- RGPD6 ENSG00000183054.13 protein_coding - + chr2:110513802-110610840:- chr2:110603539:+ chr2:111271379-111368417:- chr2:111361116:+ chr2:133375142,chr2:133375146 chr2:110591560,chr2:110591556 NA NA chr2:134132714,chr2:134132718 chr2:111349137,chr2:111349133 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 0 2 1 36 6 ENST00000409261.6 unknown upstream upstream mismatches(1),multimappers(1) AGGTTCATCGTGAAGAATAAATGAGATAAGCTACCTCAAGTGCCTGTACCAAAATAGACTCACAATACAT___TGACCCTGGAAACAGACGGGGGATTCTTATAAGTCACAAAAGAAAATAAATAACTTCATCCATGGAGGGAAAGAGACAGCTTGAGAAAAGGGACTTTGGAAAAAGGCTGTCTCTAGACAGCAGTCTTGTG|GTGAGTGGGGAAATTGCAGAGGAAAAATACACAAGTGAATACAATTAATGACTTCTGCACTCTTTGATTCCTGCTACCCTGTGAGGGGAATGATCATAGAATTTTGAAGCTGGAAGGAATCTCGGAGATAGCCTATTGCTGCCGCTCTGCCTACCCAGGAATGTCTTTCTACAAAGTCAG___CTTTCTCCAAAACACGCCCCACACGAGGGCTGAGCTCCTCCACAGCGGAT MEGKRQLEKRDFGKRLSLDSSLV|vsgeiaeekytseyn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23150 IL6R::GATAD2B ENSG00000160712.13::ENSG00000143614.11 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IL6R ENSG00000160712.13 protein_coding + + chr1:154405193-154469450:+ chr1:154436110:+ chr1:154377669-154441926:+ chr1:154408586:+ GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153828348:- chr1:153761506-153895836:- chr1:153800824:- chr1:154442919,chr1:154442919 chr1:153842685,chr1:153842670 NA NA chr1:154415395,chr1:154415395 chr1:153815161,chr1:153815146 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Immunoglobulin_domain(100%),Interleukin-6_receptor_alpha_chain__binding(100%)|Coiled-coil_and_interaction_region_of_P66A_and_P66B_with_MBD2(100%),GATA_zinc_finger(100%) IL6Ra-bind(100%),ig(100%)|GATA(100%),P66_CC(100%) 0 2 1 17 195 ENST00000368485.8 ENST00000368655.5 downstream downstream duplicates(1) TCAAGGACCTCCAGCATCACTGTGTCATCCACGACGCCTGGAGCGGCCTGAGGCACGTGGTGCAGCTTCGTGCCCAGGAGGAGTTCGGGCAAGGCGAGTGG...GCGAGTGGAGCCCGGAGGCCATGGGCACGCCTTGGACAG|GATGGATAGAATGACAGAAGATGCTCTTCGCTTGAATCTGTTGAAGCGGAGCTTGGACCCAGCAGATGAGCGAGATGATGTCCTGGCAAAGCGACTCAAAATGGAGGGGCATGAGGCCATGGAACGTCTGAAAATGTTGGCATTGCTCAAAAG EWSPEAMGTPWT|gwie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23151 SMYD3::SLC44A5 ENSG00000185420.19::ENSG00000137968.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246327201:- chr1:245912644-246670614:- chr1:246490503:- SLC44A5 ENSG00000137968.17 protein_coding - + chr1:75202129-75611114:- chr1:75416935:+ chr1:75667814-76076799:- chr1:75882620:+ chr1:246325428,chr1:246325431 chr1:75236015,chr1:75236012 NA NA chr1:246488730,chr1:246488733 chr1:75701700,chr1:75701697 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none MYND_finger(100%),SET_domain(79%)| SET(30%),zf-MYND(100%)| 2 1 0 180 5 ENST00000490107.6 unknown upstream upstream none GTCAA___ATATTAACAAACTGACTGAAGATAAGAAAGAGGGCCTCAGGCAACTCGTAATGACATTTCAACATTTCATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCCTTTGCAAAA|GCTCATAGGCAGAAGGGATTTGCCTTGTCACCAAGATGAGACTTTGGACTGTGGAACTTTTGAGTTGAAACGAGTTGAGACCTTGGGGAACTGTTGGGAGGGCATGATTGGTTTTGAAATGTGAAGCTACGAGATTTGGGAAGGG SNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAK|ahrqkgfalspr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23152 ELMO1::ENSG00000290149 ENSG00000155849.16::ENSG00000290149.1 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELMO1 ENSG00000155849.16 protein_coding - - chr7:36852906-37449223:- chr7:37211386:- chr7:36892511-37488826:- chr7:37250991:- ENSG00000290149 ENSG00000290149.1 protein_coding + - chr7:37683843-37950412:+ chr7:37839559:- chr7:37723446-37990014:+ chr7:37879161:- chr7:37156975 chr7:37852844 NA NA chr7:37196580 chr7:37892446 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none ELMO/CED-12_family(33%),ELMO__armadillo-like_helical_domain(100%)| DUF3361(100%),ELMO_CED12(0%)| 2 0 1 95 7 ENST00000310758.9 unknown upstream downstream none TTCCACACCTGCAAGG___GTCAGATCAAGAAATCCAAACCTATACTATTGCAGTGATTAATGCGCTTTTCCTGAAGGCTCCTGcTGAGAGGAGGCAG___GAGATG...CCAAAATGGACCCCCAGGACCAG___GCTCAGAGGGACATCATATTTGAACTTCGAAGAATTGCTTTTGATGCTGAGTCTGAACCTAACAACAGCAGTGGCAGCATGGAGAAACGCAAGTCCATGTACACGCGAGATTATAAGAAGCTTGGGTTCATT|GCATCAGAATTGCCATCTCGTTTCATCGCTCTTCAGTCTGCAGAACACTATAGGATTACTTGTAATGTAcGTCTTCTAGTGACAAAtGCTCTCAGTTCTGTTTATCTGAAAATGTATTAATTTTTCC KMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFI|aselpsrfialqsaehyritcnvrllvtnalssvylkmy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23154 RPS19::POU2F2 ENSG00000105372.8::ENSG00000028277.22 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE TRUE 2140 TRUE 3935 TRUE 1486 RPS19 ENSG00000105372.8 protein_coding + + chr19:41860255-41872925:+ chr19:41860289:+ chr19:42364325-42376993:+ chr19:42364359:+ POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42122576:- chr19:42590262-42700737:- chr19:42626728:- chr19:41860752,chr19:41860752 chr19:42124609,chr19:42124613 NA NA chr19:42364822,chr19:42364822 chr19:42628761,chr19:42628765 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),POU2F1_C(100%),Pou(100%) 0 115 0 17278 2205 ENST00000598742.6 ENST00000389341.9 downstream downstream duplicates(20),mismatches(111) CCCTGGCTGGCAGCGCGGAGGCCGCACG|AAATAAGAATGTCTAAGCCCCTGGAGGCCGAGAAGCAAGGTCTGGACTCCCCATCAGAGCACACAG___ACACCGAAAGAAATGGACCAGACACTAATCATCAG___AACCCCCAAAATAAGACCTCCCCATTCTCCGTGTCCCCAACTGGCCCCAGTACAAAG___ATCAAGGCTGAAGACCCCAGTGGCGATTCAGCCCCAGCAGCACCCCTGCCCCCTCAGCCGGCCCAGCCTCATCTGCCCCAGGCCCAACTCATGTTGACGGGCAGCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23155 RPS19::POU2F2 ENSG00000105372.8::ENSG00000028277.22 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA TRUE 3935 TRUE 1486 RPS19 ENSG00000105372.8 protein_coding + + chr19:41860255-41872925:+ chr19:41860494:+ chr19:42364325-42376993:+ chr19:42364564:+ POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42122576:- chr19:42590262-42700737:- chr19:42626728:- chr19:41860752,chr19:41860752 chr19:42124609,chr19:42124613 NA NA chr19:42364822,chr19:42364822 chr19:42628761,chr19:42628765 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),POU2F1_C(100%),Pou(100%) 1 0 0 71 2205 ENST00000593863.5 ENST00000389341.9 downstream downstream none GGCCCGGACATGCCCGGTCAGCGCCGTCCGGGAACCGAGCGTGGGCCCCGGGGGGCAGCGGCGGG|AAATAAGAATGTCTAAGCCCCTGGAGGCCGAGAAGCAAGGTCTGGACTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23160 RTN4R::AP2M1 ENSG00000040608.14::ENSG00000161203.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RTN4R ENSG00000040608.14 protein_coding - - chr22:20241415-20283246:- chr22:20268071:- chr22:20228938-20270769:- chr22:20255594:- AP2M1 ENSG00000161203.14 protein_coding + + chr3:184174689-184184214:+ chr3:184176951:+ chr3:183892477-183902002:+ chr3:183894739:+ chr22:20255790,chr22:20255793 chr3:184174557,chr3:184174554 NA NA chr22:20243313,chr22:20243316 chr3:183892345,chr3:183892342 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |Adaptor_complexes_medium_subunit_family(100%),Clathrin_adaptor_complex_small_chain(100%) |Adap_comp_sub(100%),Clat_adaptor_s(100%) 2 5 0 54 6532 ENST00000043402.8 ENST00000382456.7 upstream upstream none TGCGGACCCGGCCGCGGGGAGACGGGCGCCCGCCCCGAAACGACTTTCAGTCCCCGACGCGCCCCGCCCAACCCCTACGATGAAGAGGGCGTCCGCTGGAG|GTCTGTTCTCAGAGCGATGGGCCGCGGAGACTGATCTGCCGCCATGATTGGAGGCTTATTCATCTATAATCACAAGGGGGAGGTGCTCATCTCCCGAGTCTACCGAGATGACATCGG___GAGGAACGCAGTGGATGCCTTTCGGGTCAATGTTATCCATGCCCGGCAGCAGGTGCGCAGCCCCGTCACCAACATTGCTCGCACCAGCTTCTTCCACGTTAAGCGGTCCAACATTTG MKRASAG|glfserwaaetdlpp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23167 CMTM4::NAE1 ENSG00000183723.13::ENSG00000159593.15 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CMTM4 ENSG00000183723.13 protein_coding - - chr16:66614750-66696743:- chr16:66696340:- chr16:66648653-66730646:- chr16:66730243:- NAE1 ENSG00000159593.15 protein_coding - - chr16:66802875-66873256:- chr16:66826780:- chr16:66836778-66907159:- chr16:66860683:- chr16:66672192,chr16:66672196 chr16:66837145,chr16:66837146 NA NA chr16:66706095,chr16:66706099 chr16:66871048,chr16:66871049 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Membrane-associating_domain(8%)|ThiF_family(98%) MARVEL(0%)|ThiF(85%) 0 5 0 186 1534 ENST00000394106.7 ENST00000290810.8 upstream downstream none CCGGCCTGCGCTGCGACCCCGACTACCTGCGCGGCGCGCTCGGCCGCCTCAAGGTCGCCCAAGTG|GTTGTGGGGTGATCATGGGCAAGAGGCTTTAGAATCTGCTCATGTTTGCCTAATAAATGCAACAGCCACAGGAACTGAAATTCTTAAAAACTTGGTACTACCAG___GTATTGGTTCGTTTACAATTATTGATGGAAATCAGGTCAGCGGAGAAGATGCTGGAAACAA___TTTCTTCCTTCAAAGAAGCAGTATCGGCAAG___AACCGAGCTGAAGCTGCCATGGA...GAG___AGTCCAGAAAACCTTCTAGACAATGATCCCTCATTTTTCTGTAGGTTTACTGTTGTAGTTGCAACTCAGCTTCCTGAAAG___CACTTCACTACGCTTAGC GLRCDPDYLRGALGRLKVAQV|vvg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23185 GMEB2::STMN3 ENSG00000101216.11::ENSG00000197457.10 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GMEB2 ENSG00000101216.11 protein_coding - - chr20:63587602-63627101:- chr20:63602965:- chr20:62218955-62258454:- chr20:62234318:- STMN3 ENSG00000197457.10 protein_coding - - chr20:63639705-63657682:- chr20:63644309:- chr20:62271058-62289035:- chr20:62275662:- chr20:63599091,chr20:63599093 chr20:63651260,chr20:63651259 NA NA chr20:62230444,chr20:62230446 chr20:62282613,chr20:62282612 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none SAND_domain(41%)|Stathmin_family(100%) SAND(1%)|Stathmin(100%) 2 2 3 428 563 ENST00000370077.2 ENST00000370053.3 upstream downstream mismatches(1) AAGAGGGGGAGAACCTGGAAGCTGAGATTGTGTACCCCATCACCTGTGGAGACAGCAGAGCCAACCTCATCTGGAGGAAGTTTGTGTGTCCCGGCATCAATGTGAAATGTGTTCAG|CCTACAAGGAGAAGATGAAGGAGCTGTCGGTGCTGTCGCTCATCTGCTCCTGCTTCTACACACAGCCGCACCCCAATACCGTCTACCAGTACGGGG___ACATGGAGGTGAAGCAGCTGGACAAGCGGGCCTCAGGCCAGAGCTTCGAGGcCA EGENLEAEIVYPITCGDSRANLIWRKFVCPGINVKCVQ|ptrrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 62223375 FALSE 62275662 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23188 RNF213::CA11 ENSG00000173821.20::ENSG00000063180.9 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF213 ENSG00000173821.20 protein_coding + + chr17:80260852-80398794:+ chr17:80334270:+ chr17:78234651-78372594:+ chr17:78308070:+ CA11 ENSG00000063180.9 protein_coding - - chr19:48637946-48646187:- chr19:48640280:- chr19:49141203-49149444:- chr19:49143537:- chr17:80335827 chr19:48645395 NA NA chr17:78309627 chr19:49148652 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |Eukaryotic-type_carbonic_anhydrase(76%) |Carb_anhydrase(23%) 0 1 1 210 247 ENST00000582970.6 ENST00000084798.9 downstream downstream none CTGAGAAAGGAGTTCATCTGCTGGGTCCGGGAGGCTCTTGGAG|CTCCGGGGAACCTTGTACAACACCGGCCGACATGTCTCCTTCCTGCCTGCACCCCGACCTGTGGTCAATGTGTCTGGAGGTCCCCTCCTTTACAGCCAC...GAGCTCGCGACGGAGCCGGCTCGGAACATCAGATCAACCACCAGGGCTTCTCTGCTGAG___GTGCAGCTCATTCACTTCAACC LRKEFICWVREALG|apgnlvqhrptcllpactptcgqcvwrspplqp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ring finger protein 213 1 Yes ALCL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23197 LPIN1::MIR3681HG ENSG00000134324.12::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3945 TRUE 1487 LPIN1 ENSG00000134324.12 protein_coding + + chr2:11677595-11827409:+ chr2:11785248:+ chr2:11817721-11967535:+ chr2:11925374:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12622736:+ chr2:11974052-12843039:+ chr2:12762862:+ chr2:11826506 chr2:12250111 NA NA chr2:11966632 chr2:12390237 NA NA sense sense stop-codon intron intron deletion high none Lipin/Ned1/Smp2_multi-domain_protein_middle_domain(18%),lipin__N-terminal_conserved_region(100%)| Lipin_N(100%),Lipin_mid(3%)| 300 292 300 2358 2337 ENST00000449576.6 unknown downstream upstream duplicates(209),low_entropy(15),mismappers(9),mismatches(18) CGGAGATCCTTCCGGACTCGCAAAACATGCAAGCGACAACGGAGCCCGGTCAGCCAACCAGTCCCCGCAGTCGGTGGGCAGCTCGGGCGTGGACAGTGGCGTGGAGAGCACCTCGGACGGGCTGAGGGACCTCCCTTCCATCGCCATCTCCCTCTGCGGGGGCCTCAGCGACCACCGGGAGATCACGAAAGGTACCGCGGGCCTCGCGCGGGCGCCCTCTGGTGGCCGCCGGTCAGAAGGCGCAGAGGCTTAGGCTTCTCCAAGGAGTGCGTGTCAAGGCAGCTTTTCCCTTGGTTGCGGTTAATGATAGCACAGATGATAGCgCCGAACTCATAATCCCGATGTTTCTGGCTTGCAGTTAGT|TGGGAAGCAAGGGTTGGAGGAGGAACAAGATTCTTGGTGCAACTTTCCAATATGTGGTTCTAGGACTCTGCTTTAATGCAAACCCAAATGCTTAACAAGTGAAGGTCATTTTGTCCTCAATTCATTTTTGAAATTATTTTATTTTATAGCTGAGGAAACCGAAGCTTAGAGAGGCAAAATGGCTTGTCCAGGACCACCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548s chr2:11767444-11767525:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23198 LPIN1::MIR3681HG ENSG00000134324.12::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3945 TRUE 1487 LPIN1 ENSG00000134324.12 protein_coding + + chr2:11677595-11827409:+ chr2:11785076:+ chr2:11817721-11967535:+ chr2:11925202:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12674229:+ chr2:11974052-12843039:+ chr2:12814355:+ chr2:11826506,chr2:11785252,chr2:11785253,chr2:11785247,chr2:11785252,chr2:11785252,chr2:11785225,chr2:11785250,chr2:11785249,chr2:11785245,chr2:11785247 chr2:12250111,chr2:12622740,chr2:12622741,chr2:12622737,chr2:12622741,chr2:12622744,chr2:12622737,chr2:12622735,chr2:12622735,chr2:12622735,chr2:12622742 NA NA chr2:11966632,chr2:11925378,chr2:11925379,chr2:11925373,chr2:11925378,chr2:11925378,chr2:11925351,chr2:11925376,chr2:11925375,chr2:11925371,chr2:11925373 chr2:12390237,chr2:12762866,chr2:12762867,chr2:12762863,chr2:12762867,chr2:12762870,chr2:12762863,chr2:12762861,chr2:12762861,chr2:12762861,chr2:12762868 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Lipin/Ned1/Smp2_multi-domain_protein_middle_domain(18%),lipin__N-terminal_conserved_region(100%)| Lipin_N(100%),Lipin_mid(0%)| 19 23 50 4815 82 ENST00000449576.6 ENST00000664018.1 downstream upstream duplicates(24),mismatches(3) TTCTCCTTCCAGGAAAAGAG___ATAAACGAAGCCGACATCTTGGTGCTGACGGCGTCTACTTGGATGACCTCACAGACATGGATCCTGAAGTGGCGGCCCTGTATTTTCCCAAAAA___CGGAGATCCTTCCGGACTCGCAAAACATGCAAGCGACAACGGAGCCCGGTCAGCCAACCAGTCCCCGCAGTCGGTGGGCAGCTCGGGCGTGGACAGTGGCGTGGAGAGCACCTCGGACGGGCTGAGGGACCTCCCTTCCATCGCCATCTCCCTCTGCGGGGGCCTCAGCGACCACCGGGAGATCACGAAAG|GGATTCTTTTCCCTGCTGCATCTGCCTGCTTATCAGAGGCTCCTGGGATTCTGAGAGTGATCTTCTACAGGAAGCCGTTGAGAAGGGCATTGGGTCTTTTGTTACCAGGCACAATGAAG___GAATGGAAACTAGGGCTCAGAGGTTTCACTTGCCAGAAGTCACTCGGTCCCTGGGAAGGATGCAAACCAGCTCACCTGGCTCTCCAGCACATGCACC SPSRKRDKRSRHLGADGVYLDDLTDMDPEVAALYFPKNGDPSGLAKHASDNGARSANQSPQSVGSSGVDSGVESTSDGLRDLPSIAISLCGGLSDHREITK|gilfpaasaclseapgilrvifyrkplrralglllpgtmkewklglrgftcqkslgpwegckpahlalqhmh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548s chr2:11767444-11767525:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23199 LPIN1::MIR3681HG ENSG00000134324.12::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3945 TRUE 1487 LPIN1 ENSG00000134324.12 protein_coding + + chr2:11677595-11827409:+ chr2:11785076:+ chr2:11817721-11967535:+ chr2:11925202:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12702097:+ chr2:11974052-12843039:+ chr2:12842223:+ chr2:11826506,chr2:11785252,chr2:11785253,chr2:11785247,chr2:11785252,chr2:11785252,chr2:11785225,chr2:11785250,chr2:11785249,chr2:11785245,chr2:11785247 chr2:12250111,chr2:12622740,chr2:12622741,chr2:12622737,chr2:12622741,chr2:12622744,chr2:12622737,chr2:12622735,chr2:12622735,chr2:12622735,chr2:12622742 NA NA chr2:11966632,chr2:11925378,chr2:11925379,chr2:11925373,chr2:11925378,chr2:11925378,chr2:11925351,chr2:11925376,chr2:11925375,chr2:11925371,chr2:11925373 chr2:12390237,chr2:12762866,chr2:12762867,chr2:12762863,chr2:12762867,chr2:12762870,chr2:12762863,chr2:12762861,chr2:12762861,chr2:12762861,chr2:12762868 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Lipin/Ned1/Smp2_multi-domain_protein_middle_domain(18%),lipin__N-terminal_conserved_region(100%)| Lipin_N(100%),Lipin_mid(0%)| 4 0 6 4815 150 ENST00000449576.6 ENST00000664018.1 downstream upstream duplicates(1),low_entropy(1) CTCTGCCAGTGTAGTCCAGACAGCAAACAAGACGGATTCgCCTTCCAGGAAAAGAG___ATAAACGAAGCCGACATCTTGGTGCTGACGGCGTCTACTTGGATGACCTCACAGACATGGATCCTGAAGTGGCGGCCCTGTATTTTCCCAAAAA___CGGAGATCCTTCCGGACTCGCAAAACATGCAAGCGACAACGGAGCCCGGTCAGCCAACCAGTCCCCGCAGTCGGTGGGCAGCTCGGGCGTGGACAGTGGCGTGGAGAGCACCTCGGACGGGCTGAGGGACCTCCCTTCCATCGCCATCTCCCTCTGCGGGGGCCTCAGCGACCACCGGGAGATCACGAAAG|GAATGGAAACTAGGGCTCAGAGGTTTCACTTGCCAGAAGTCACTCGGTCCCTGGGAAGGATGCAAACCAGCTCACCTGGCTCTCCAGCACATGCACCCCAGACCACCCCCAAGGATGTGACCCATTCCTTCTGTGGAGTCTGATCTTCCAAACTTTAGACAACAGCTCCTTCTGCA SASVVQTANKTDSPSRKRDKRSRHLGADGVYLDDLTDMDPEVAALYFPKNGDPSGLAKHASDNGARSANQSPQSVGSSGVDSGVESTSDGLRDLPSIAISLCGGLSDHREITK|gmetraqrfhlpevtrslgrmqtsspgspahapqttpkdvthsfcgv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548s chr2:11767444-11767525:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23200 DDX1::MIR3681HG ENSG00000079785.16::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3946 TRUE 1488 DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15630163:+ chr2:15731302-15774470:+ chr2:15770287:+ MIR3681HG ENSG00000224184.7 lncRNA + - chr2:11833926-12702913:+ chr2:12409194:- chr2:11974052-12843039:+ chr2:12549320:- chr2:15633212,chr2:15633241 chr2:12672505,chr2:12672505 NA NA chr2:15773336,chr2:15773365 chr2:12812631,chr2:12812631 NA NA sense antisense stop-codon intron intron inversion/3'-3' high none DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%),SPRY_domain(100%)| DEAD(100%),Helicase_C(100%),SPRY(100%)| 48 38 109 143 131 ENST00000677302.1 unknown downstream downstream duplicates(58),low_entropy(3),mismappers(1),mismatches(13) GTAGCAGCCGTGGAAAAGGGTGTTATAACACAAGACTCAAGGAAGATGGAGGCTGTACCATATGGTACAACGAGATGCAG___TTACTATCTGAGATAGAAGAACACCTGAACTGTACCATTTCTCAGGTTGAGCCGGATATAAAGGTACCAGTGGATGAATTTGATGGGAAAGTTACCTACGGTCAGAAAAGGGCTGCTGGTGGTAAGCTTTGAATTATTTTAAATACAATTTTAAATGTAAATATACCTGTTTTG|TGGATTTTCTTTGCAAGACAGCTGGTTGTCAAGAAGGCAAAAGAACCATCTTCCATAACTCTAAAAGGCTAAGCCTGGAAGACCACATGGTCATTTCTGCCATTTTTATATTAGTTACAACAAGTCATCAGCCAGTCAAGACTCGAGAAAAGAGGAAACTGACTCCACCCTTGATAAGAACAGTAAGATGTATGTCCAAGGAGGGGTAGAATTCTTTAcGGCCATCTGTGATGACTTTCCAGAGTATTCATTTGTGAGTTTCTCCATGAGATGATTCTTATAGTTTATCTTTGATTTTAATTTTTCTATTGCTTACTAAGAGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23201 DDX1::MIR3681HG ENSG00000079785.16::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3946 TRUE 1488 DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15613284:+ chr2:15731302-15774470:+ chr2:15753408:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12166738:+ chr2:11974052-12843039:+ chr2:12306864:+ chr2:15633269,chr2:15633275,chr2:15633279,chr2:15633282,chr2:15633287,chr2:15633289,chr2:15633273,chr2:15633292,chr2:15633288,chr2:15633307,chr2:15633308,chr2:15633316,chr2:15633319,chr2:15633321,chr2:15633327 chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588 NA NA chr2:15773393,chr2:15773399,chr2:15773403,chr2:15773406,chr2:15773411,chr2:15773413,chr2:15773397,chr2:15773416,chr2:15773412,chr2:15773431,chr2:15773432,chr2:15773440,chr2:15773443,chr2:15773445,chr2:15773451 chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none DEAD/DEAH_box_helicase(82%),SPRY_domain(100%)| DEAD(71%),SPRY(100%)| 0 1 0 65535 2 ENST00000677302.1 ENST00000412294.5 downstream upstream none TTaAGGGAGCTTCTGATAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTGGAAAATGGA|AACCCCTAGAGCAATCAACAGACAGACAGAGCCCTGCTTCATGGAGCGTCTGCTCTCTCCTGGAGCTCACACGCTGAAACAGACAGGATGCAACACCTCAGGGTTGTTGGAG lRELLIIGGVAARDQLSVLENG|np* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3681 chr2:12199130-12199201:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23202 DDX1::MIR3681HG ENSG00000079785.16::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3946 TRUE 1488 DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15597471:+ chr2:15731302-15774470:+ chr2:15737595:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12308688:+ chr2:11974052-12843039:+ chr2:12448814:+ chr2:15633269,chr2:15633275,chr2:15633279,chr2:15633282,chr2:15633287,chr2:15633289,chr2:15633273,chr2:15633292,chr2:15633288,chr2:15633307,chr2:15633308,chr2:15633316,chr2:15633319,chr2:15633321,chr2:15633327,chr2:15603988 chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:12010650 NA NA chr2:15773393,chr2:15773399,chr2:15773403,chr2:15773406,chr2:15773411,chr2:15773413,chr2:15773397,chr2:15773416,chr2:15773412,chr2:15773431,chr2:15773432,chr2:15773440,chr2:15773443,chr2:15773445,chr2:15773451,chr2:15744112 chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12150776 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none DEAD/DEAH_box_helicase(13%)| DEAD(7%)| 1 0 0 42695 131 ENST00000677302.1 ENST00000412294.5 downstream upstream none TGCACAAGCTGTGGcAGAGATGGATTGGaT___CCTCCCAACTGATATCCAGGCTGAATCTATCaCATTGATCTTAGGAGGAGGTGATGTACTTATG___GCTGCAG...CAGTTATCCAGATAGTTTATGAAACTCTGAAAGACCAACAGGAAGGCAAAAAAGGAAAAACAACAATTAAAACTGGTGCTTCAG|AGGCTGTTGCAATTAGG VIQIVYETLKDQQEGKKGKTTIKTGAS|eavai NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23203 DDX1::MIR3681HG ENSG00000079785.16::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE TRUE FALSE NA TRUE 3946 TRUE 1488 DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15607313:+ chr2:15731302-15774470:+ chr2:15747437:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12166738:+ chr2:11974052-12843039:+ chr2:12306864:+ chr2:15633269,chr2:15633275,chr2:15633279,chr2:15633282,chr2:15633287,chr2:15633289,chr2:15633273,chr2:15633292,chr2:15633288,chr2:15633307,chr2:15633308,chr2:15633316,chr2:15633319,chr2:15633321,chr2:15633327 chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588,chr2:11901588 NA NA chr2:15773393,chr2:15773399,chr2:15773403,chr2:15773406,chr2:15773411,chr2:15773413,chr2:15773397,chr2:15773416,chr2:15773412,chr2:15773431,chr2:15773432,chr2:15773440,chr2:15773443,chr2:15773445,chr2:15773451 chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714,chr2:12041714 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none DEAD/DEAH_box_helicase(78%),SPRY_domain(100%)| DEAD(47%),SPRY(100%)| 0 0 0 44302 2 ENST00000677302.1 ENST00000412294.5 downstream upstream low_entropy(1) AGcAATCCCATAACAAACAATTTGATAATTATGGAGAG___GAATTCACTATGCATGATACCATTGGATGTTACCTGGATATAGATAAGGGACATGTCAAGTTC...GATAATCCTAAATTAAG|AACCCCTAGAGCAATCAACAGACAGACAGAGCCCTGCTTCATGGAGCGTCTGCTCTCTCCTGGAGCTCACACGCTGAAACAGAC DNPKLr|tprainrqtepcfmerllspgahtlkq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3681 chr2:12199130-12199201:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23209 SMURF2::CEP95 ENSG00000108854.16::ENSG00000258890.8 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE FALSE FALSE NA TRUE 3947 FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64561500:- chr17:62538400-62658425:- chr17:62557618:- CEP95 ENSG00000258890.8 protein_coding + + chr17:64506865-64542461:+ chr17:64537603:+ chr17:62502983-62538579:+ chr17:62533721:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none C2_domain(100%),WW_domain(100%)| C2(100%),WW(100%)| 1 0 3 775 781 ENST00000262435.14 ENST00000556440.7 upstream upstream none CCCAACAACAGCCTCAGGCAGGTCATTGCCGCATTGAGGTTTCCAGGGAAGAGATTTTTGAG___GAATCATATCGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCGTGGAGAAGAAGGCCTTGACTATGGAGGCGTTGCCAG|ACATTACATAAGGTGAAGAGGGAGCTGAG...AGAAGGAAATTCAGCAGCTGCAGGACATGATAACACAGAATGATGATGATGTTTTCTTCCGGGAACTGGAAGCTGAGCGCTTCAGATCTCGGCTTCAGCTGGCTTCCTTTCAGTACAGTAAAAGTCCC QQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAr|hyir* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23211 LPIN1::TRIB2 ENSG00000134324.12::ENSG00000071575.12 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LPIN1 ENSG00000134324.12 protein_coding + + chr2:11677595-11827409:+ chr2:11773745:+ chr2:11817721-11967535:+ chr2:11913871:+ TRIB2 ENSG00000071575.12 protein_coding + - chr2:12716910-12742734:+ chr2:12737522:- chr2:12857036-12882860:+ chr2:12877648:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' medium none lipin__N-terminal_conserved_region(100%)| Lipin_N(100%)| 3 0 1 8200 135 ENST00000449576.6 unknown downstream downstream duplicates(2) CACCTGGCCACCTCCCCCATCCTGTCAGAAGGAGCTTCGAGAATGGAATGCCAGCTGAAAAGGGGCTCTGTGGACAGGATGAGAGGCCTGGACCCCAGCAC...CTCGGATGAGGCCATGGAGCTGCTGGAGAGCAGCAG___AACTCTTCCTAATGATATACCTCCATTCCAAGATGATATTCCTGAGGAAAACCTCTCCCTGGCTGTGATTTACCCTCAGTCAGCCTCATACCCTAATTCGGATAGAGAGTGGTCACCCACTCCCAG|GTGGCAGGTGGAGCTGGCCCACGAGACTTACTAGCTGTCaAGATGTGACGGAGGTGAAAAGGTG SDEAMELLESSRTLPNDIPPFQDDIPEENLSLAVIYPQSASYPNSDREWSPTPr|wqvelahety* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548s chr2:11767444-11767525:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23229 NFYC::TRIT1 ENSG00000066136.21::ENSG00000043514.17 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40766703:+ chr1:41157320-41237275:+ chr1:41232375:+ TRIT1 ENSG00000043514.17 protein_coding - + chr1:39838110-39883511:- chr1:39862800:+ chr1:40303782-40349183:- chr1:40328472:+ chr1:40769329,chr1:40769330,chr1:40769329,chr1:40769325 chr1:39862458,chr1:39862193,chr1:39862455,chr1:39862455 NA NA chr1:41235001,chr1:41235002,chr1:41235001,chr1:41234997 chr1:40328130,chr1:40327865,chr1:40328127,chr1:40328127 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Core_histone_H2A/H2B/H3/H4(100%)| CBFD_NFYB_HMF(100%),Histone(100%)| 267 278 300 6233 779 ENST00000447388.8 unknown downstream upstream duplicates(85),low_entropy(2),mismatches(47),multimappers(1) GTGCAGATTGTCCAGGCTCAGCCACAGGGTCAAGCCCAACAGGCCCAGAGTGGCACTGGACAGACCATGCAGGTGATGCAGCAGATCATCACTAACACAGGAGAGATCCAGCAGATCCCG___GTGCAGCTGAATGCCGGCCAGCTGCAGTATATCCGCTTAGCCCAGCCTGTATCAGGCACTCAAGTTGTGCAGGGACAGATCCAGACACTTGCCACCAATGCTCAACAG|CTTCAATTACAGTTTCAGCATCACTCTACCTACAATCAGCCTGAATGCTGGGAAGAGCCAAAAGGATCTGTGTTATCTTTCAAAGACAGCATGCCACTCTGCTCCATTTCCCCTTCTCCCAAAGGATACTTGTGATCTGTGTGCATGGAAATGATTTGGAATGAAATGCTTTTCTCTGCACAAACCATATTTTGACAACTAAGGGACAACTGGCTTCTTTGTAA VQIVQAQPQGQAQQAQSGTGQTMQVMQQIITNTGEIQQIPVQLNAGQLQYIRLAQPVSGTQVVQGQIQTLATNAQQ|lqlqfqhhstynqpecweepkgsvlsfkdsmplcsispspkgyl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-30e,hsa-mir-30c-1 chr1:40754355-40754446:+,chr1:40757284-40757372:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23231 DDX39B::CSNK2A1 ENSG00000198563.14::ENSG00000101266.19 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 3950 FALSE NA DDX39B ENSG00000198563.14 protein_coding - - chr6:31530219-31542448:- chr6:31535367:- chr6:31497996-31510225:- chr6:31503144:- CSNK2A1 ENSG00000101266.19 protein_coding - - chr20:472498-543835:- chr20:508660:- chr20:453142-524479:- chr20:489304:- chr6:31534626,chr6:31534628 chr20:511981,chr20:511980 NA NA chr6:31502403,chr6:31502405 chr20:492625,chr20:492624 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none DEAD/DEAH_box_helicase(100%)|Protein_kinase_domain(100%) DEAD(100%),ResIII(100%)|APH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 16 18 23 2973 551 ENST00000458640.5 ENST00000646561.1 upstream downstream duplicates(2),mismatches(10) AGAGCCTCAACCTCAAACACATTAAACACTTTATTTTGGATGAATGTGATAAGATGCTTGAACAGCTCG___ACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCACGAGAAGCAGGTCATGATGTTCAGTGCTACCTTGAGCAAAGAGATCCGTCCAGTCTGCCGCAAGTTCATGCAAGAT|TTTGAAGAAAACAGGTCTGAAACAAGGTCTTACCCCCAGCTGCTTCTGAACACAGTGACTGCCAGATCTCCAAACATCAAGTCCAGCTTTGTCCGCCAACCTGTCTGACATGTCGGGACCCGTGCCAAGCAGGGCCAGAGTTTACACAGATGTTAATACACACAGACCTCGAGAATACTGGGATTACGAGTCACATGTGGTGGAATGGGG___AAATCAAGATGACTACCAGCTGGTTCGAAAATTAGGCCGAGGTAAATACAGTGAAGTATTTGAAG SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD|feenrsetrsypqlllntvtarspnikssfvrqpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Casein kinase II subunit alpha CMGC CK2 P68400 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23232 UBAP1::ZBTB5 ENSG00000165006.14::ENSG00000168795.5 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBAP1 ENSG00000165006.14 protein_coding + + chr9:34179005-34252523:+ chr9:34179240:+ chr9:34179003-34252521:+ chr9:34179238:+ ZBTB5 ENSG00000168795.5 protein_coding - + chr9:37438102-37465450:- chr9:37464604:+ chr9:37438099-37465447:- chr9:37464601:+ chr9:34183776,chr9:34183828 chr9:37451415,chr9:37451397 NA NA chr9:34183774,chr9:34183826 chr9:37451412,chr9:37451394 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 35 22 28 394 69 ENST00000625521.2 unknown downstream upstream duplicates(4),inconsistently_clipped(1),low_entropy(2),mismatches(7) CTTCAACATGGCGGCTGCGGCACTGGCGGTGGCTACGGTGACGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGTCGGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGGCAGCAGCGGCATTCAG|GAGAAGATGGGACGGCAGTGTCTTACCACCGCATCCCCCACAGCTCCTCGCACGAAGCCTGGGAGTAGTGGGCATTCAATAAATGCCTATTAAACACTTCAGTCCTCTCATAACAAGTTGGGGCATTCCGAAACACTGGCTCCACCCCTCCAGGGTCGGCCGCTGGCTCCCGATGGCAGTCTGCCTATGGCCTTGCTCTGGTGAAATGAAACCTCGTCGCTCAAGA LQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRRQQRHS|gedgtavsyhriphsssheawe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23234 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 2142 TRUE 3951 TRUE 1489 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118483636 chr9:20373941 NA NA chr11:118354351 chr9:20373939 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman CXXC_zinc_finger_domain(100%)|ANC1_homology_domain_(AHD)(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AHD(100%) 40 19 14 158 64 ENST00000710560.1 ENST00000380338.9 downstream downstream duplicates(5),inconsistently_clipped(1),low_entropy(2) CAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG|TCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAG___GTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACA KQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEK|SEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDND NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 23235 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 3951 TRUE 1489 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482092:+ chr11:118307171-118397547:+ chr11:118352807:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118483636 chr9:20373941 NA NA chr11:118354351 chr9:20373939 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high Mitelman CXXC_zinc_finger_domain(100%)|ANC1_homology_domain_(AHD)(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AHD(100%) 2 2 14 164 64 ENST00000710560.1 ENST00000380338.9 downstream downstream duplicates(1) AAGAGAGGATCCTGCCCCAAAGAAAAGCAGTAGTGAGCCTCCTCCACGAAAGCCCGTCGAGGAAAAGAGTGAAGAAGGGAATGTCTCGGCCCCTGGGCCTGAATCCAAACAGGCCACCACTCCAGCTTCCAGGAAGTCAAGCAAGCAGGTCTCCCAGCCAGCACTGGTCATCCCGCCTCAGCCACCTACTACAGGACCGCCAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG|TCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAG___GTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACA REDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPES|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 23243 ATP6V1G2-DDX39B::CSNK2A1 ENSG00000254870.5::ENSG00000101266.19 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1G2-DDX39B ENSG00000254870.5 protein_coding - - chr6:31530219-31546608:- chr6:31535367:- chr6:31497996-31514385:- chr6:31503144:- CSNK2A1 ENSG00000101266.19 protein_coding - - chr20:472498-543835:- chr20:508660:- chr20:453142-524479:- chr20:489304:- chr6:31534626,chr6:31534628 chr20:511981,chr20:511980 NA NA chr6:31502403,chr6:31502405 chr20:492625,chr20:492624 NA NA sense sense unknown 3'UTR/splice-site 5'UTR/splice-site translocation high none |Protein_kinase_domain(100%) DEAD(100%),ResIII(100%)|APH(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 16 18 23 2973 551 ENST00000376185.5 ENST00000646561.1 upstream downstream duplicates(2),mismatches(10) AGAGCCTCAACCTCAAACACATTAAACACTTTATTTTGGATGAATGTGATAAGATGCTTGAACAGCTCG___ACATGCGTCGGGATGTCCAGGAAATTTTTCGCATGACCCCCCACGAGAAGCAGGTCATGATGTTCAGTGCTACCTTGAGCAAAGAGATCCGTCCAGTCTGCCGCAAGTTCATGCAAGAT|TTTGAAGAAAACAGGTCTGAAACAAGGTCTTACCCCCAGCTGCTTCTGAACACAGTGACTGCCAGATCTCCAAACATCAAGTCCAGCTTTGTCCGCCAACCTGTCTGACATGTCGGGACCCGTGCCAAGCAGGGCCAGAGTTTACACAGATGTTAATACACACAGACCTCGAGAATACTGGGATTACGAGTCACATGTGGTGGAATGGGG___AAATCAAGATGACTACCAGCTGGTTCGAAAATTAGGCCGAGGTAAATACAGTGAAGTATTTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Casein kinase II subunit alpha CMGC CK2 P68400 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23248 ENSG00000284989::ST3GAL3 ENSG00000284989.1::ENSG00000126091.21 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000284989 ENSG00000284989.1 protein_coding + + chr1:43650149-43931014:+ chr1:43792149:+ chr1:44115820-44396686:+ chr1:44257820:+ ST3GAL3 ENSG00000126091.21 protein_coding + - chr1:43705824-43931165:+ chr1:43799523:- chr1:44171495-44396837:+ chr1:44265194:- chr1:43799636,chr1:43802167,chr1:43802158,chr1:43799635 chr1:43802158,chr1:43799635,chr1:43799636,chr1:43802167 NA NA chr1:44265307,chr1:44267838,chr1:44267829,chr1:44265306 chr1:44267829,chr1:44265306,chr1:44265307,chr1:44267838 NA NA sense antisense unknown 3'UTR/splice-site intron inversion/3'-3' high none none JmjC(100%),JmjN(100%),PHD_2(100%),Tudor_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)| 15 15 2 338 52 ENST00000645057.1 unknown downstream downstream low_entropy(1) TCTCCGCTGTG___GTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAGGAGGACTCCA___ATTCAGTGGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAG|GACACACACAGAAGGTTCCATCTATGAGGAATGGACCCTTTCCAAACACTGAATCTGCTGATGTCTTGATCTTGGACTTCCCAGCCTTCAGAACTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23249 ST3GAL3::ENSG00000284989 ENSG00000126091.21::ENSG00000284989.1 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ST3GAL3 ENSG00000126091.21 protein_coding + + chr1:43705824-43931165:+ chr1:43792149:+ chr1:44171495-44396837:+ chr1:44257820:+ ENSG00000284989 ENSG00000284989.1 protein_coding + - chr1:43650149-43931014:+ chr1:43799523:- chr1:44115820-44396686:+ chr1:44265194:- chr1:43799636,chr1:43802167,chr1:43802158,chr1:43799635 chr1:43802158,chr1:43799635,chr1:43799636,chr1:43802167 NA NA chr1:44265307,chr1:44267838,chr1:44267829,chr1:44265306 chr1:44267829,chr1:44265306,chr1:44265307,chr1:44267838 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 15 15 2 338 52 ENST00000347631.8 unknown downstream downstream low_entropy(1) TCTCCGCTGTG___GTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAGGAGGACTCCA___ATTCAGTGGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAG|GACACACACAGAAGGTTCCATCTATGAGGAATGGACCCTTTCCAAACACTGAATCTGCTGATGTCTTGATCTTGGACTTCCCAGCCTTCAGAACTGTG MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGS|ghtqkvpsmrngpfpntesadvlildfpafrt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23250 FAM133B::CDK6-AS1 ENSG00000234545.8::ENSG00000237819.7 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FAM133B ENSG00000234545.8 protein_coding - - chr7:92560758-92590393:- chr7:92575771:- chr7:92190072-92219707:- chr7:92205085:- CDK6-AS1 ENSG00000237819.7 lncRNA + - chr7:92836367-92917188:+ chr7:92850886:- chr7:92465681-92546502:+ chr7:92480200:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 5 5 9 275 46 ENST00000445716.6 unknown upstream downstream mismatches(1) TTCATCTTCTTCTTCATCAAGCTCTGATTCTTCCAGCAGTTCTTCTGATTCTGAAGATGAG___GATAAGAAACAAGGAAAACGGAGAAAGAAAAAGAAGAACCGTTCACATAAATCTTCTGAAAGCTCCATGTCAGAAACTGAATCAGACAGTAAG___GATAGTTTAAAAAAGAAAAAGAAGTCAAAAGATGGAACTGAGAAAGAAAAG|GAAGCCAAGATCTGAGCAGGGGAAGGAGAAGAATGGCAAATAAACATCTTCCAGTGTCGGGTTAGGAAGATATTTGATCTTTCAATGTGTTCAACAAATGGGTTTAATAATGCACATTTAGGTATAAAACAGTTCACAACAGAAATATTTGCTACTCAGCCCATTTATCCTGGGAATTACACAACATGGACCATTTTCAATAATTCTTTCCATTATAATGATTTCCTCCTGCTCAAGCAAGAGAGATGTACAAACCAGTTTTGTCTAGAAATGTAATA SSSSSSSSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEK|eaki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23252 SNAPC3::KMT2A ENSG00000164975.16::ENSG00000118058.25 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 2146 FALSE NA FALSE NA SNAPC3 ENSG00000164975.16 protein_coding + + chr9:15422734-15465953:+ chr9:15458067:+ chr9:15422732-15465951:+ chr9:15458065:+ KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118488614:+ chr11:118307171-118397547:+ chr11:118359329:+ chr9:15458590,chr9:15458590,chr9:15458588 chr11:118485410,chr11:118485411,chr11:118485399 NA NA chr9:15458588,chr9:15458588,chr9:15458586 chr11:118356125,chr11:118356126,chr11:118356114 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none snRNA-activating_protein_complex_(SNAPc)__subunit_3(79%)|F/Y-rich_N-terminus(100%),F/Y_rich_C-terminus(100%),PHD-finger(100%),PHD-like_zinc-binding_domain(100%),SET_domain(100%) SNAPC3(88%)|FYRC(100%),FYRN(100%),PHD(100%),SET(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%) 4 3 3 158 51 ENST00000467062.5 ENST00000710560.1 downstream upstream duplicates(2) CAATGCTGGTGTTGGGCAGTCAAAAACTCACACAACTGAGGGATTCAATTCGATGTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACTCCTGAC...CAGAGATTTGAGCAG___AACTATCATTGAGTGGTCAGAGTCCCATGATAGAGGCTATGGAAAGTTTCAGACTGCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAAACTGGGTTTTCCTTACTTATACTGTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGACATAAG___GCTTGTGCATCATGATGACTGCTTGGATAGGACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGACCAGAAAATGTTTTGTTTGTAAAATGTATACAGCCAG|TTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTGGAGGACCAGCTGGAAAATTGGTGTTGTCGTCGTTGCAAATTCTGTCACGTTTGTGGAAGGCAACATCAGGCTACAAAG___CAGCTGCTGGAGTGTAATAAGTGCCGAAACAGCTATCACCCTGAGTGCCT RDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTAs|lciaksvvspstsfv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other 23253 VAV2::ELAVL2 ENSG00000160293.17::ENSG00000107105.15 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 2147 FALSE NA FALSE NA VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133992075:- chr9:136627016-136857726:- chr9:136857197:- ELAVL2 ENSG00000107105.15 protein_coding - - chr9:23690104-23826337:- chr9:23762249:- chr9:23690102-23826335:- chr9:23762247:- chr9:133954205,chr9:133954207 chr9:23802638,chr9:23802637 NA NA chr9:136819327,chr9:136819329 chr9:23802636,chr9:23802635 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none CAMSAP_CH_domain(58%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) CAMSAP_CH(0%),CH(0%)|RRM_1(100%),RRM_5(100%) 1 2 5 132 14 ENST00000371851.1 ENST00000380110.8 upstream downstream duplicates(1) GGCTCATCGATTGCAAGGTCCTGCCGCCCAACCACCGGGTGGTGTGGCCCTCGGCCGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGGGGTCCTTCTGTGCCAGCTGCTGCACAACCTCTCCCCCGGCTCCATCGACCTCAAGGACATCAACTTCCGGCCGCAGATGTCCCAG|CAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACCATAAACAACAACTGTTCGTCACCAGTTGACTCTGGGAACACAGAAGACAGCAAGACCAACTTAATAGTCAACTACCTTCCTCAGAACATGACACAGGAGGAACTAAAGAGTCTCTTTGGGAGCATTGGTGAAATAGAGTCCTGTAAGCTTGTAAGAGACAAAATAACAG___GGCAGAGCTT LIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQ|QVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23255 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63734724:- chr15:63900817-64126147:- chr15:64026923:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:64040267:- chr15:64199235-64364232:- chr15:64332466:- chr15:63733716 chr15:64051067 NA NA chr15:64025915 chr15:64343266 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none Regulator_of_chromosome_condensation_(RCC1)_repeat(49%)|Protein_kinase_domain(100%) RCC1(35%),RCC1_2(13%)|Kdo(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),RIO1(100%) 2 2 0 57 2 ENST00000443617.7 ENST00000457488.6 upstream downstream none CATTCTCGGGAGGCAGGCAGGTCCACTTCGAAATTTGCTCTTCAGACTGATGGACTCAACTGTCCCAGATGAAATCCAAGAG___GTGGTAATTGAAACTTTATCAGTGGGAGCAACCATGCTGTTACCTCCATTACGAGAACGGATGGAATTACTTCATTCTCTTTTACCTCAAGGACCTGATAGATGGGAAAGCTTATCTAAAGGACAG|GATTGTATGTTCCAGGCCTCAATGAGGAGTCCAAACATGGAGCCATTCAAGCAGCAGAAGGTGGAGGACTTTTATGACATCGGAGAGGAGCTGGGGAG___TGGCCAGTTTGCCATCGTGAAGAAGTGCCGGGAGAAGAGCACGGGGC ILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSKGQ|dcMFQASMRSPNMEPFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,FALSE,TRUE,FALSE,FALSE|FALSE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23273 EIF4H::ELN ENSG00000106682.16::ENSG00000049540.19 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2150 TRUE 3953 TRUE 1490 EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74174442:+ chr7:73588561-73611452:+ chr7:73588772:+ ELN ENSG00000049540.19 protein_coding + + chr7:74027789-74069907:+ chr7:74063153:+ chr7:73442119-73484237:+ chr7:73477483:+ chr7:74175727,chr7:74175727 chr7:74060981,chr7:74060978 NA NA chr7:73590057,chr7:73590057 chr7:73475311,chr7:73475308 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 41 288 3 4113 788 ENST00000678438.1 ENST00000621115.4 downstream upstream duplicates(54),inconsistently_clipped(1),mismatches(13) GAGCGGAGACGGCAAATGGCGGACTTCGACACCTACGACGATCGGGCCTACAGCAGCTTCGGCGGCGGCAGAGG|GAGCAGCAGTGCCTGGGGTCCTTGGAGGGCTCGGGGCTCTCGGTGGAGTAGGCATCCCAGGCGGTGTGGTGG___GAGCCGGACCCGCCGCCGCCGCTGCCGCAGCCAAAGCTGCTGCCAAAGCCGCCCAGTTTG___GCCTAGTGGGAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGAG___GTATACCTCCAGCTGCAGCCGCTAAAGCAGCTAAATACG___GAGTGGCAGCAAGACCTGGCTTCGGATTGTCTCCCATTTTCCCAG___GTGGGGCCTGCCTGGGGAAAGCTTGTGGCCGGAAGAGAAA MADFDTYDDRAYSSFGGGRg|sssawgpwrargsrwsrhprrcggsrtrrrrcrsqsccqsrpvwpsgsrwarrtrsrrawssrcwgpwrytsscsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 73604636|73604248|73604248 FALSE|FALSE|FALSE 73449694|73449694|73461026 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE elastin 2 B-ALL leukaemia_lymphoma fusion translocation 23274 EIF4H::ELN ENSG00000106682.16::ENSG00000049540.19 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2151 TRUE 3953 TRUE 1490 EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74174442:+ chr7:73588561-73611452:+ chr7:73588772:+ ELN ENSG00000049540.19 protein_coding + + chr7:74027789-74069907:+ chr7:74061101:+ chr7:73442119-73484237:+ chr7:73475431:+ chr7:74175727,chr7:74175727 chr7:74060981,chr7:74060978 NA NA chr7:73590057,chr7:73590057 chr7:73475311,chr7:73475308 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 11 144 3 4113 295 ENST00000678438.1 ENST00000621115.4 downstream upstream duplicates(24),mismatches(10) CGGAGACGGCAAATGGCGGACTTCGACACCTACGACGATCGGGCCTACAGCAGCTTCGGCGGCGGCAGAGG|TACCTGGAGCCCTGGCTGCCGCTAAAGCAGCCAAATATG___GAGCAGCAGTGCCTGGGGTCCTTGGAGGGCTCGGGGCTCTCGGTGGAGTAGGCATCCCAGGCGGTGTGGTGG___GAGCCGGACCCGCCGCCGCCGCTGCCGCAGCCAAAGCTGCTGCCAAAGCCGCCCAGTTTG___GCCTAGTGGGAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGAG___GTATACCTCCAGCTGCAGCCGCTAAAGCAGCTAAATACG___GAGTGGCAGCAAG MADFDTYDDRAYSSFGGGRg|twspgcr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 73604636|73604248|73604248 FALSE|FALSE|FALSE 73449694|73449694|73461026 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE elastin 2 B-ALL leukaemia_lymphoma fusion translocation 23276 NCLN::GNA11 ENSG00000125912.11::ENSG00000088256.9 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2152 TRUE 3954 TRUE 1491 NCLN ENSG00000125912.11 protein_coding + + chr19:3185563-3209575:+ chr19:3193428:+ chr19:3185561-3209573:+ chr19:3193426:+ GNA11 ENSG00000088256.9 protein_coding + + chr19:3094362-3123999:+ chr19:3110149:+ chr19:3094360-3123997:+ chr19:3110147:+ chr19:3193663,chr19:3193661 chr19:3105655,chr19:3105650 NA NA chr19:3193661,chr19:3193659 chr19:3105653,chr19:3105648 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |G-protein_alpha_subunit(91%) |Arf(100%),G-alpha(41%) 71 75 127 553 1024 ENST00000246117.9 ENST00000078429.9 downstream upstream duplicates(11),low_entropy(8),mismatches(36) GGGCGCCGTGGTCATCATCCTGCCCAGGGCCATGGCCGCCGTGCCCCAGGACGTCGTCCGG___CAATTCATGGAGATCGAGCCGGAGATGCTGGCCATGGAGACCGCCGTCCCCGTGTACTTTGCCGTGGAGGACGAGGCCCTGCTGTCTATCTACAAGCAGACCCAGGCTGCCTCCGCCTCCCAGGGCTCCGCCTCTGCTGCTGAAG|GCACGGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCATCATCCACGGCGCCGGCTACTCGGAGGAGGACAAGCGCGGCTTCACCAAGCTCGTCTACCAGAACATCTTCACCGCCATGCAGGCCATGATCCGGGCCATGGAGACGCTCAAGATCCTCTACAAGTACGAGCAGAACAAG___GCCAATGCGCTCCTGATCCGGGAGGTGGACGTGGAGAAGGTGACCACCTTCGAGCATCA GAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQAASASQGSASAAE|gTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANALLIREVDVEKVTTFEH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1 Yes uveal melanoma, primary central nervous system melanocytic neoplasms epithelial, other oncogene missense 23277 NCLN::GNA11 ENSG00000125912.11::ENSG00000088256.9 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2153 TRUE 3954 TRUE 1491 NCLN ENSG00000125912.11 protein_coding + + chr19:3185563-3209575:+ chr19:3186214:+ chr19:3185561-3209573:+ chr19:3186212:+ GNA11 ENSG00000088256.9 protein_coding + + chr19:3094362-3123999:+ chr19:3110149:+ chr19:3094360-3123997:+ chr19:3110147:+ chr19:3193663,chr19:3193661 chr19:3105655,chr19:3105650 NA NA chr19:3193661,chr19:3193659 chr19:3105653,chr19:3105648 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |G-protein_alpha_subunit(91%) |Arf(100%),G-alpha(41%) 20 32 32 508 1024 ENST00000246117.9 ENST00000078429.9 downstream upstream duplicates(3),mismatches(4) CCCAGCTGCCGCCCCGCGCGGCCCCGCCGCCGGCCAGGATGCTGGAGGAAGCGGGCGAGGTGCTGGAGAACATGCTGAAGGCGTCTTGTCTGCCGCTCGGCTTCATCGTCTTCCTGCCCGCTGTGCTGCTGCTGGTGGCGCCGCCGCTGCCTGCCGCCGACGCCGCGCACGAGTTCACCGTGTACCGCATGCAGCAGTACGACCTGCAGGGCCAGCCCTACG|GCACGGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCATCATCCACGGCGCCGGCTACTCGGAGGAGGACAAGCGCGGCTTCACCAAGCTCGTCTACCAGAACATCTTCACCGCCATGCAGGCCATGATCCGGGCCATGGAGACGCTCAAGATCCTCTACAAGTACGAGCAGAACAAG___GCCAATGCGCTCCTGATCCGGGAGGTGGACGTGGAGAAGGTGACCACCTTCGAGCATCAGTACGTCAGTGCCATCAAGA MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPY|gTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANALLIREVDVEKVTTFEHQYVSAIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1 Yes uveal melanoma, primary central nervous system melanocytic neoplasms epithelial, other oncogene missense 23278 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29461734:+ chr12:29542222-29640421:+ chr12:29614667:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 53 59 122 1147 228 ENST00000539107.5 ENST00000550906.2 downstream upstream duplicates(12),low_entropy(2),mismatches(3) ATTGGAAAAGTGTTTGGAGGAAGAAAGGCAAAGAAATAAAGAGGCATTAGTATCCGCTGCAAAG___CTTGAAAAAGAAGCAaTGAAGGATGCAGTTTTAAAAGTCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG|GGATATGATATTGAAGCACGTGACAAGTTGGTGATTTCAGCAATGGTTTCTCCTGTCTATAGAAACTCTTCAGCAGATGGCAATTTTCCACCTTCCTGTATAAAACCAGAATCCTCTCACCTGGCAGAAATCTTTCTCTCCAGATGCTGCAAAGCCAGCACAGATCATCTTCTCTGTGATCCCTCCTGGATGGGCAGAATA___AAAGAAGAGGGGCTGAAGCGGATGCTGCTTGATATCATTTACATGACCTATTTTCAAAAATAACAACTGGCATTAATGTTTATGCAACAAAAATATGCTTACCTGCACTGATGCT LEKCLEEERQRNKEALVSAAKLEKEAmKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQ|gydieardklvisamvspvyrnssadgnfppscikpesshlaeiflsrcckastdhllcdpswmgrikeeglkrmlldiiymtyfqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23279 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29486886:+ chr12:29542222-29640421:+ chr12:29639819:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 24 19 16 1147 72 ENST00000539107.5 ENST00000551108.2 downstream upstream duplicates(1),mismappers(1) TGGAAAAGTGTTTGGAGGAAGAAAGGCAAAGAAATAAAGAGGCATTAGTATCCGCTGCAAAG___CTTGAAAAAGAAGCAaTGAAGGATGCAGTTTTAAAAGTCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG|GTGATCAAAATGGAACACAATTGCTACCAGAAGAGAACTGCTCCCCTGCAGTGGAGCAGTGAAGAGGCCTTTTACATCTAAGACCAAAGGAGAGTCTGTGGCAGTCTGAGGAAGTGCTGGCCTGTGGTAGGATCCACAGCACCACTTCTAAAAGCCCTGTCAGGTGGCTGCCCTTGGACTGCCATGAGAAAGCGATGGAGGATGGAGAGAGCACTATGTTCTGG EKCLEEERQRNKEALVSAAKLEKEAmKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQ|vikmehncyqkrtaplqwsseeafyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23280 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29464405:+ chr12:29542222-29640421:+ chr12:29617338:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none none none 0 2 54 1147 275 ENST00000539107.5 ENST00000550906.2 downstream upstream duplicates(1),mismatches(2) TGTTTGGAGGAAGAAAGGCAAAGAAATAAAGAGGCATTAGTATCCGCTGCAAAG___CTTGAAAAAGAAGCAaTGAAGGATGCAGTTTTAAAAGTCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG|AAAGAAGAGGGGCTGAAGCGGATGCTGCTTGATATCATTTACATGACCTATTTTCAAAAATAACAACTGGCATTAATGTTTATGCAACAAAAATATGCTTACCTGCACTGATGCTTCCCCATCCGGTCACAGCACAGATCTCCGAGGAAAATAGAGGCTCTGCGCTGTGTGGGAGACATACTGGCCTCACCACCGAGTTGTACTCCAGAGGAGAGCTTAGTTGTATTAGGGCAATGTCAGAGTCATAACTTAGTGTGTTAAAG CLEEERQRNKEALVSAAKLEKEAmKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQ|keeglkrmlldiiymtyfqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23283 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190370893:+ chr3:190040330-190129927:+ chr3:190088682:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein-tyrosine_phosphatase(19%)|PMP-22/EMP/MP20/Claudin_family(100%) Y_phosphatase(30%)|PMP22_Claudin(100%) 15 26 74 2074 200 ENST00000647444.2 ENST00000468220.1 upstream upstream duplicates(7),mismatches(11) TGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG___GAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTA|ATGATTCCTGCCCTCAAACATCGGACTCCAAGTTCTTGAGTTTTGGGACTCAGACTGGCTTTCTTGCTCCTCAGCTTGCAGATGAACTACTGTGGGATCTTGTGATCAT___GACTGAACTCGTTGTTGGCCACCTGTTTGGAAAACCATTCTCTTGTGGTTGGATCTAACACATACAGCATGTGAAG___GTACCAGAAACACAGAAGACTG EISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVL|mipalkhrtpss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23284 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2154 TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190402337:+ chr3:190040330-190129927:+ chr3:190120126:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Protein-tyrosine_phosphatase(19%)|PMP-22/EMP/MP20/Claudin_family(83%) Y_phosphatase(30%)|PMP22_Claudin(30%) 9 3 25 2074 297 ENST00000647444.2 ENST00000264734.3 upstream upstream duplicates(2),mismatches(2) GAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG___GAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTA|GTGAGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAATGCTTTTGATGGGATTCGCACCTGTGATGAGTACGATTCCATACTTGCGGAGCATCCCT___TGAAGCTGGTGGTAACTCGAGCGTTGATGATTACTGCAGATATTCTAGCTGGGTTTGGATTTCTCACCCTGCTCCTTGGTCTTGACTGCGTGAAATTCCT NRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVL|VSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23285 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31918970:- chr1:32372022-32410457:- chr1:32384571:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190370893:+ chr3:190040330-190129927:+ chr3:190088682:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein-tyrosine_phosphatase(0%)|PMP-22/EMP/MP20/Claudin_family(100%) Y_phosphatase(0%)|PMP22_Claudin(100%) 1 1 35 2523 200 ENST00000647444.2 ENST00000468220.1 upstream upstream duplicates(2),mismatches(4) AGAAAACACTGATTGATAATAGGCATTTTAGTGGTCTTTTTAATGTTTTCTGCTGTGAAACATTTCAAGATTTATTGATTTTTTTTTTTCACTTTCCCCATCACACTCACACGCACGCTCACACTTTTTATTTGCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG|ATGATTCCTGCCCTCAAACATCGGACTCCAAGTTCTTGAGTTTTGGGACTCAGACTGGCTTTCTTGCTCCTCAGCTTGCAGATGAACTACTGTGGGATCTTGTGATCAT___GACTGAACTCGTTGTTGGCCACCTGTTTGGAAAACCATTCTCTTGTGGTTGGATCTAACACATACAGCATGTGAAGG MNRPAPVEISYENMRFLITHNPTNATLNKFTE|mipalkhrtpss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23286 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31918970:- chr1:32372022-32410457:- chr1:32384571:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190374528:+ chr3:190040330-190129927:+ chr3:190092317:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Protein-tyrosine_phosphatase(0%)|PMP-22/EMP/MP20/Claudin_family(100%) Y_phosphatase(0%)|PMP22_Claudin(100%) 0 1 17 2523 208 ENST00000647444.2 ENST00000468220.1 upstream upstream duplicates(2),mismatches(2) AGAAAACACTGATTGATAATAGGCATTTTAGTGGTCTTTTTAATGTTTTCTGCTGTGAAACATTTCAAGATTTATTGATTTTTTTTTTTCACTTTCCCCATCACACTCACACGCACGCTCACACTTTTTATTTGCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG|GACTGAACTCGTTGTTGGCCACCTGTTTGGAAAACCATTCTCTTGTGGTTGGATCTAACACATACAGCATGTGAAG___GTACCAGAAACACAGAAGACTGAC?CCCG...___GTGAGCACAAAATGCCGAGGCC MNRPAPVEISYENMRFLITHNPTNATLNKFTE|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23287 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190404762:+ chr3:190040330-190129927:+ chr3:190122551:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Protein-tyrosine_phosphatase(19%)|PMP-22/EMP/MP20/Claudin_family(63%) Y_phosphatase(30%)|PMP22_Claudin(18%) 1 0 12 2074 304 ENST00000647444.2 ENST00000264734.3 upstream upstream mismatches(1) CTaACACGCACGCTCACACTTTTTATTTGCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG___GAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCcCGTTCTA|TGAAGCTGGTGGTAAtTCGAGCGTTGATGATTACTGCAGATATTCTAGCTGGGTTTGGATTTCTCACCCTGCTCCTTGGTCTTGACTGCGTGAAATTCCTCCCTGATGAGCCGTACATTAAAGTCCGCATCTGCTTTGTTGCTGGAGCCACGTTACTAATAGCAG___GTACCCCAGGAATCATTGGCTCTGTGTGGTATGCTGTTGATGTGTATGTGGAACGTTCTACTTTGGTTTTGCA MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIpVL|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23288 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31918970:- chr1:32372022-32410457:- chr1:32384571:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190402337:+ chr3:190040330-190129927:+ chr3:190120126:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Protein-tyrosine_phosphatase(0%)|PMP-22/EMP/MP20/Claudin_family(83%) Y_phosphatase(0%)|PMP22_Claudin(30%) 1 1 10 2523 297 ENST00000647444.2 ENST00000264734.3 upstream upstream duplicates(1),mismatches(1) GAAAACACTGATTGATAATAGGCATTTTAGTGGTCTTTTTAATGTTTTCTGCTGTGAAACATTTCAAGATTTATTGATTTTTTTTTTTCACTTTCCCCATCACACTCACACGCACGCTCACACTTTTTATTTGCCATAATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG|GTGAGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAATGCTTTTGATGGGATTCGCACCTGTGATGAGTACGATTCCATACTTGCGGAGCATCCCT___TGAAGCTGGTGGTAACTCGAGCGTTGATGATTACTGCAGATATTCTAGCTGGGTTTGGATTTCTCACCCTGCTCCTTGG...ACATTAAAGTCCGCATCTGCTTTGTTGCTGGAGCCACGTTACTAATAGCAG___GTACCCCAGGAATCATTGGCTCTGTGTGGTATGCTGTTGATGTGTATGTG MNRPAPVEISYENMRFLITHNPTNATLNKFTE|VSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23289 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190408314:+ chr3:190040330-190129927:+ chr3:190126103:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Protein-tyrosine_phosphatase(19%)|PMP-22/EMP/MP20/Claudin_family(31%) Y_phosphatase(30%)|PMP22_Claudin(0%) 0 1 6 2074 256 ENST00000647444.2 ENST00000264734.3 upstream upstream none TGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCTCAACAAGTTCACAGAG___GAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTCCAGTTGAAAAAGAAGGAATCCACGTTCTA|GTACCCCAGGAATCATTGGCTCTGTGTGGTATGCTGTTGATGTGTATGTGGAACGTTCTACTTTGGTTTTGCACAATATATTTCTTGGTATCCAATATAAATTTGGTTGGTCCTGTTGGCTCGGAATGGCTGGGTCTCTGGGTTGCTTTTTGGCTGGAGCTGTTCTCACCTGCTGCTTATATCTTTTTAAAG___ATGTTGGACCTGAG EISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVL|vpqeslalcgmllmcmwnvllwfctiyflvsninlvgpvgsewlglwvafwlelfspaayiflkmldl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23290 RFTN1::DAZL ENSG00000131378.14::ENSG00000092345.14 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2155 FALSE NA FALSE NA RFTN1 ENSG00000131378.14 protein_coding - - chr3:16313574-16514026:- chr3:16493725:- chr3:16355081-16555533:- chr3:16535232:- DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16592148:- chr3:16628299-16711813:- chr3:16633655:- chr3:16436787 chr3:16593243 NA NA chr3:16478294 chr3:16634750 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Raftlin(10%)| Raftlin(0%)| 26 31 15 441 69 ENST00000334133.9 ENST00000399444.7 upstream downstream duplicates(2),mismatches(10),same_gene(4) TTCTCCTCCGCCGGTCCCATACG___CTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCTGAGTGCTG|AAATCTGTGGACCGAAGCATACAAACGGTGGTATCTTGTCTGTTTAATCCAGAGAACAGACTGAGAAACTCTGTTGTTACTCAAGATGACTACTTCAAG___GATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGATC...___CTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAG MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSA|eicgpkhtnggilsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast no_match TRUE Lung adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma LUNG,BREAST,BREAST no_match 16450882,16399439,16450882 FALSE,FALSE,FALSE 16640105,16640105,16636090 FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23293 ENSG00000246331::PKP2 ENSG00000246331.2::ENSG00000057294.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2156 FALSE NA FALSE NA ENSG00000246331 ENSG00000246331.2 lncRNA + + chr12:30755074-30780739:+ chr12:30755271:+ chr12:30908008-30933673:+ chr12:30908205:+ PKP2 ENSG00000057294.18 protein_coding - - chr12:32790745-32896798:- chr12:32850973:- chr12:32943679-33049732:- chr12:33003907:- chr12:30762005,chr12:30762006,chr12:30761980 chr12:32866902,chr12:32866904,chr12:32866787 NA NA chr12:30914939,chr12:30914940,chr12:30914914 chr12:33019836,chr12:33019838,chr12:33019721 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Armadillo/beta-catenin-like_repeat(93%) |Arm(35%) 9 19 25 39 36 ENST00000500076.2 ENST00000700559.2 downstream downstream duplicates(2),mismatches(3) TGGCCGCCAGCGCTTGTCGGGTGTTAGTTCCGGGCCCAGCTTGGGCTGGTGGTAGGTCGGGAGAGGGCGCGGTCTCCCAGCCTTTGCGCAGATTGCGGGGCACCAGGTGGGGCCGAGGCGACGCCGAACGCCGGCAGGCCGGAAACCGCGCAGCCCCGCTGGACCTCGCTGATTGCCGGCGGCACCGGTGGTTTCGCGACCTTGAACAG|GTTAACCAGCTTCGTGGCATCCTCAAGCTTCTGCAGCTCCTAAAAGTTCAGAATGAAGACGTTCAGCGAGCTGTGTGTGGGGCCTTGAGAAACTTAGTATTTGAAGACAATGACAACAAATTGGAGGTGGCTGAACTAAATGGGGTACCTCGGCTGCTCCAGGTGCTGAAGCAAACCAGAGACTTGGAGACTAAAAAACAAATAACAG___GTTTGCTGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23294 BCAT1::TSPAN11 ENSG00000060982.15::ENSG00000110900.16 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24842082:- chr12:24962958-25102035:- chr12:24995016:- TSPAN11 ENSG00000110900.16 protein_coding + + chr12:30926428-30996602:+ chr12:30953981:+ chr12:31079362-31149537:+ chr12:31106915:+ chr12:24839672,chr12:24839676 chr12:30951115,chr12:30951111 NA NA chr12:24992606,chr12:24992610 chr12:31104049,chr12:31104045 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site inversion high none Amino-transferase_class_IV(71%)|Tetraspanin_family(100%) Aminotran_4(80%)|Tetraspanin(100%) 23 11 15 3140 56 ENST00000261192.12 ENST00000546076.6 upstream upstream duplicates(2),mismatches(4) TCCAGTGTCCCTGTGGGCCAATCCCAAGTATGTAAGAGCCTGGAAAGGTGGAACTGGGGACTGCAAGATGGGAGG___GAATTACGGCTCATCTCTTTTTGCCCAATGTGAAGCAGTAGATAATGGGTGTCAGCAGGTCCTGTGGCTCTATGGAGAGGACCATCAGATCACTGAAGTGGGAACTATGAATCTTTTTCTTTACTGGATAAATGAAGATGGAG|GCCCAGAAGCCATGGCCCACTATAAGcCTGAGCAGGACGACTGGCTGATCATCTACTTGAAGTATTTACTCTTTGTCTTCAACTTCTTCTTCTGG___GTCGGGGGAGCAGCCGTCCTGGCTGTGGGCATCTGGACCCTGG PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDG|gpeaMAHYKpEQDDWLIIYLKYLLFVFNFFFWVGGAAVLAVGIWTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23295 UBQLN1::ENSG00000285987 ENSG00000135018.14::ENSG00000285987.1 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBQLN1 ENSG00000135018.14 protein_coding - - chr9:83659968-83707958:- chr9:83707500:- chr9:86274883-86322873:- chr9:86322415:- ENSG00000285987 ENSG00000285987.1 lncRNA + - chr9:84316514-84657077:+ chr9:84609663:- chr9:86931429-87271992:+ chr9:87224578:- chr9:83693948,chr9:83693953 chr9:84654602,chr9:84654604 NA NA chr9:86308863,chr9:86308868 chr9:87269517,chr9:87269519 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquitin_family(31%)| Rad60-SLD(0%),Rad60-SLD_2(0%),ubiquitin(0%)| 16 11 17 945 27 ENST00000376395.9 unknown upstream downstream mismatches(1) GGTGGCTGCTGCGGATGTCGGTGTGAGCGAGCGGCGCCTGAACACACGGCGGCTGCCGAGCGCCTGACCCGGGCCTGCGCCAGAGCCTGCACCGAGCTCCG...CTGCATTCTTCGCTGTCCAGGCCTGCCGGCTCTGGTGTCTGCTGGCTCCTCCTTGCTCGCCTGCTCCCTCCTGCTTGCCTGAGTCACCGCCGCCGCCGCCGCCACAGCCATGGCCGAGAGTGGTGAAAGCGGCGGTCCTCCGGGCTCCCAGGATAGCGCCGCCGGAGCCGAAGGTGCTGGCGCCCCCGCGGCCGCTGCCTCCGCGGAGCCCAAAATCATGAAAGTCACCGTGAAGACCCCGAAGGAAAAGGAGGAATTCGCCGTGCCCGAGAATAGCTCCGTCCAGCAG|CTGCATACATAGGCCTCTAAGGTTCAGATGGCTGAGCCATGAGATGGAAAATTCCTTTAGCCCCTAAACGATCGTATGGAAGAAGACTATCCACTTACCAGGAACCTTTGTGTTGTGTTGGACTATTACATCG___GAGCAAAAACCAAGTTCAAATGGATGACCTGAGTGGCCACAGGGCAGAGGTGGCCACGTCTGAGG MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQ|lht* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23296 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120409450:+ chr11:120207122-120360646:+ chr11:120280159:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120245813:+ chr11:120107349-120190654:+ chr11:120116522:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 13 12 18 186 35 ENST00000397843.7 unknown downstream upstream duplicates(2),mismatches(5) ATTTTGAACCGAGAGTCACCAACAGATAAGAAGCAGAAAGTTGAGCGCATTGCATCACATGATTTTGACCCCACAG___ATAGCTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGATCCGAGATATATG|TTGAAGGAGTAGGAGAGAAGGTAAGGATCCCCAAAGGACAGGATCTCCAAGGAGGACAACACAGGAGCTAGGACTTGATCCCCAGACTGTGGGCTGACCTCTGAGACCAGACAGAGAACCCAGGCAGGACCTGGGAAGAAAG___ATCCCAAAGGAAACGAGTGTTGGAAAT ILNRESPTDKKQKVERIASHDFDPTDSSSKKTKSSSEESRSEIY|vegvgekvripkgqdlqggqhrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23297 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2157 TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120407823:+ chr11:120207122-120360646:+ chr11:120278532:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120246449:+ chr11:120107349-120190654:+ chr11:120117158:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 11 10 14 464 95 ENST00000397843.7 ENST00000260264.8 downstream upstream duplicates(3),mismatches(1) ATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACACAGTCTACTATCACCGACAG___GTTTCCCCTCAAAAAACCTATAAG___GCATGGAAGTATTTTGAACCGAGAGTCACCAACAGATAAGAAGCAGAAAGTTGAGCGCATTGCATCACATGATTTTGACCCCACAG|ATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTCGCAGCACTCTCAGCCAGGTGGAGCCAG___GAAATGATCGAAATGGCCTAGATTTCAACAGGCAG___ATTAAAACCGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCAC...CCTGCCATGATGTCCGGAAACCAAATGTCTGGGCTAAATGCCAGCCCATGTCAG___GACATGGCTTCCCTCCATCCGCTCCAGCAGCTTGTGCTGGTTCCCGG MSGTQSTITDRFPLKKPIRHGSILNRESPTDKKQKVERIASHDFDPT|dIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLSDSLQQTLSHRPC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23298 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2158 TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120409450:+ chr11:120207122-120360646:+ chr11:120280159:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120246449:+ chr11:120107349-120190654:+ chr11:120117158:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 2 4 14 186 95 ENST00000397843.7 ENST00000260264.8 downstream upstream duplicates(1),low_entropy(1),mismatches(1) CGCGGCCAACGCTGCGGCCACGAGCAGCCGGCAGCCCCAGATAGAGAGCCGGGAGGGAGGGCCCCGGCCCTTGCCGCGGCGGGGAGTTCGAGGCCCCGAGA...GGCACACAGTCTACTATCACCGACAG___GTTTCCCCTCAAAAAACCTATAAG___GCATGGAAGTATTTTGAACCGAGAGTCACCAACAGATAAGAAGCAGAAAGTTGAGCGCATTGCATCACATGATTTTGACCCCACAG___ATAGCTCCTCCAAGAAGACAAAGTCTAGTTCAGAGGAGAGTAGATCCGAGATATATG|ATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTCGCAGCACTCTCAGCCAGGTGGAGCCAG___GAAATGATCGAAATGGCCTAGATTTCAACAGGCAG___ATTAAAACCGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGG GTQSTITDRFPLKKPIRHGSILNRESPTDKKQKVERIASHDFDPTDSSSKKTKSSSEESRSEIY|dIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLSDSLQQTLSH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23299 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120337275:+ chr11:120207122-120360646:+ chr11:120207984:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120246449:+ chr11:120107349-120190654:+ chr11:120117158:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 1 1 4 510 95 ENST00000397843.7 ENST00000260264.8 downstream upstream duplicates(1),mismatches(1) TTTTGCTCtAAGCCGtATtCGTTGcCCCCTTACAGTCGGATGGTCTAGATGACTGAATGGAGTTTTGAGTTGGACTTTTGTGTCCCTGACGGAGTTGGGCCTGATCCCAGAGCACTGGGGGTGGGGAGGAGGTGTTACTGTAAAATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACACAGTCTACTATCACCGACAG|ATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTCGCAGCACTCTCAGCCAGGTGGAGCCAG___GAAATGATCGAAATGGCCTAGATTTCAACAGGCAG___ATTAAAACCGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCTGAGTCAAGGAC MSGTQSTITDr|yqdewgcsrfhgcsqhsqpggark* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 TRUE|TRUE,TRUE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23301 FN3KRP::FOXK2 ENSG00000141560.15::ENSG00000141568.21 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2159 TRUE 3960 TRUE 1495 FN3KRP ENSG00000141560.15 protein_coding + + chr17:82716706-82730328:+ chr17:82719057:+ chr17:80674582-80688204:+ chr17:80676933:+ FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82601303:+ chr17:80477589-80602538:+ chr17:80559179:+ chr17:82720264,chr17:82720263 chr17:82592978,chr17:82592974 NA NA chr17:80678140,chr17:80678139 chr17:80550854,chr17:80550850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Fructosamine_kinase(28%)| APH(21%),Fructosamin_kin(21%)| 12 6 16 690 488 ENST00000269373.11 ENST00000335255.10 downstream upstream duplicates(1),low_entropy(1),mismatches(4) CCGGAGCTACGACACGGATCAAGGACGAGTGTTCGTGAAAGTGAACCCCAAGGCGGAG___GCCAGAAGAATGTTTGAAGGTGAGATGGCAAGTTTAACTGCCATCCTGAAAACAAACACGGTGAAAGTGCCCAAGCCCATCAAGGTTCTGGATGCCCCAGGCGGCGGGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAGCAG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAGCCGTAAGGGAAAAGGGTGTCCAGAACTAGCGACCGGGAGAGCTTTTCTTTAACGATATCAACTCTGTGGTGCCAAAA RSYDTDQGRVFVKVNPKAEARRMFEGEMASLTAILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSs|rgesfahvgntririglpahkapqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23302 FN3KRP::FOXK2 ENSG00000141560.15::ENSG00000141568.21 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3960 TRUE 1495 FN3KRP ENSG00000141560.15 protein_coding + + chr17:82716706-82730328:+ chr17:82719057:+ chr17:80674582-80688204:+ chr17:80676933:+ FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82595782:+ chr17:80477589-80602538:+ chr17:80553658:+ chr17:82720264,chr17:82720263 chr17:82592978,chr17:82592974 NA NA chr17:80678140,chr17:80678139 chr17:80550854,chr17:80550850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Fructosamine_kinase(28%)| APH(21%),Fructosamin_kin(21%)| 1 1 19 690 11 ENST00000269373.11 ENST00000473637.6 downstream upstream mismatches(2) CGACACGGATCAAGGACGAGTGTTCGTGAAAGTGAACCCCAAGGCGGAG___GCCAGAAGAATGTTTGAAGGTGAGATGGCAAGTTTAACTGCCATCCTGAAAACAAACACGGTGAAAGTGCCCAAGCCCATCAAGGTTCTGGATGCCCCAGGCGGCGGGAGCGTGCTGGTGATGGAGCACATGGACATGAGGCATCTGAGCAG|GGCCCCTTGGCCTCAGAAGGCCCCCATG...ACACAGCAGGCCaCATCCAGACAGACCAGCAGGTGCTTCTGGAGACAAGAGCAAAGCCTTTTCCGGCAGCCCGGAACCTGGGATGAGAAACGACAGGTGGA DTDQGRVFVKVNPKAEARRMFEGEMASLTAILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSr|apwpqkap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23303 FN3KRP::FOXK2 ENSG00000141560.15::ENSG00000141568.21 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2160 TRUE 3960 TRUE 1495 FN3KRP ENSG00000141560.15 protein_coding + + chr17:82716706-82730328:+ chr17:82716896:+ chr17:80674582-80688204:+ chr17:80674772:+ FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82601303:+ chr17:80477589-80602538:+ chr17:80559179:+ chr17:82720264,chr17:82720263 chr17:82592978,chr17:82592974 NA NA chr17:80678140,chr17:80678139 chr17:80550854,chr17:80550850 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Fructosamine_kinase(11%)| APH(0%),Fructosamin_kin(0%)| 5 7 9 647 488 ENST00000269373.11 ENST00000335255.10 downstream upstream mismatches(2) CCGCGGCGGGAACATGGAGGAGCTgCTGAGGCGCGAGCTGGGCTGCAGCTCTGTCAGGGCCACGGGCCACTCGGGGGGCGGGTGCATCAGCCAGGGCCGGAGCTACGACACGGATCAAGGACGAGTGTTCGTGAAAGTGAACCCCAAGGCGGAG|CCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAGCCGTAAGGGAAAAGGGTGTCCAGAACTAGCGACCGGGAGAGCTTTTCTTTAACGATATCAACTCTGTG MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAE|prrvlctcwqhthphrppcpqsattvtsrssrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23304 LINC00941::PKP2 ENSG00000235884.4::ENSG00000057294.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC00941 ENSG00000235884.4 lncRNA + + chr12:30755167-30802602:+ chr12:30755271:+ chr12:30908101-30955536:+ chr12:30908205:+ PKP2 ENSG00000057294.18 protein_coding - - chr12:32790745-32896798:- chr12:32850973:- chr12:32943679-33049732:- chr12:33003907:- chr12:30762005,chr12:30762006,chr12:30761980 chr12:32866902,chr12:32866904,chr12:32866787 NA NA chr12:30914939,chr12:30914940,chr12:30914914 chr12:33019836,chr12:33019838,chr12:33019721 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Armadillo/beta-catenin-like_repeat(93%) |Arm(35%) 2 19 11 39 36 ENST00000650286.1 ENST00000700559.2 downstream downstream duplicates(2) GGTGGGGCCGAGGCGACGCCGAACGCCGGCAGGCCGGAAACCGCGCAGCCCCGCTGGACCTCGCTGATTGCCGGCGGCACCGGTGGTTTCGCGACCTTGAACAG|GTTAACCAGCTTCGTGGCATCCTCAAGCTTCTGCAGCTCCTAAAAGTTCAGAATGAAGACGTTCAGCGAGCTGTGTGTGGGGCCTTGAGAAACTTAGTATTTGAAGACAATGACAACAAATTGGAGGTGGCTGAACTAAATGGGGTACCTCGGCTGCTCCAGGTGCTGAAGCAAACCAGAGACTTGGAGACTAAAAAACAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23310 CAMKK2::P2RX4 ENSG00000110931.19::ENSG00000135124.16 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2161 FALSE NA FALSE NA CAMKK2 ENSG00000110931.19 protein_coding - - chr12:121237675-121298308:- chr12:121268638:- chr12:121675478-121736111:- chr12:121706441:- P2RX4 ENSG00000135124.16 protein_coding + + chr12:121210065-121234106:+ chr12:121221913:+ chr12:121647868-121671909:+ chr12:121659716:+ chr12:121266226,chr12:121266277 chr12:121219466,chr12:121219615 NA NA chr12:121704029,chr12:121704080 chr12:121657269,chr12:121657418 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(15%)|ATP_P2X_receptor(74%) Pkinase(10%)|P2X_receptor(48%) 12 2 6 207 292 ENST00000324774.9 ENST00000359949.11 upstream upstream none CCCTGTGAGGCCCTGCGGGGCCTCTCATCCTTGAGCATCCACCTGGGCATGGAGTCCTTCATTGTGGT...CAGCCGGTGGCAGCCTGGACATGAACGGACGCTGCATCTGCCCGTCCCTGCCCTACTCACCCGTCAGCTCCCCGCAGTCCTCGCCTCGGCTGCCCCGGCGG...CACGTCTCCATCACGGGTATGCAG___GACTGTGTGCAGCTGAATCAGTATACCCTGAAGGATGAAATTGGAAAG___GGCTCCTATGGTGTCGTCAAGTTGGCCTACAATGAAAATGACAATACCTACTAT___GCAATGAAGGTGCTGTCCAAAAAGAAGCTGATCCGGCAGGCCGGCTTTCCAC|GAGGAAAACTCCCTCTTCGTCATGACCAACGTGATCCTCACCATGAACCAGACACAGGGCCTGTGCCCCGAG___ATTCCAGATGCGACCACTGTGTGTAAATCAGATGCCAGCTGTACTGCCGGCTCTGCCGGCACCCACAGCAACG___GAGTCTCAACAGGCAGGTGCGTAGCTTTCAACGGGTCTG HVSITGMQDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFP|rgklplrhdqrdphhepdtgpvprdsrcdhcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase kinase 2 Other CAMKK CAMKK-Meta Q96RR4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23311 KDM4D::AMOTL1 ENSG00000186280.7::ENSG00000166025.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE TRUE 2162 TRUE 3962 TRUE 1496 KDM4D ENSG00000186280.7 protein_coding + + chr11:94973709-94999519:+ chr11:94975748:+ chr11:94706873-94732683:+ chr11:94708912:+ AMOTL1 ENSG00000166025.18 protein_coding + + chr11:94706431-94876748:+ chr11:94850114:+ chr11:94439597-94609913:+ chr11:94583279:+ chr11:94983638,chr11:94983637 chr11:94841515,chr11:94841511 NA NA chr11:94716802,chr11:94716801 chr11:94574681,chr11:94574677 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Angiomotin_C_terminal(100%) |Angiomotin_C(100%) 8 3 8 30 262 ENST00000335080.6 ENST00000317829.12 downstream upstream mismatches(3) ACACCACGTCCCCGGCTAGCGGGAGAGAGCGTGGAAAAGGATTACACCAAACTGTTTAAATCCAACGACTCCTGCTTCCATCCTTTCTCCTGAGCTAGAACC...GTTTTCATTTAATTGGATATGAAGAAAGAACAAATATGTACGGGGCAACCACGATCTTTACAAAG___AACATAAGTTCCAGGAAAGCAGGAACCTTGTCTCTCTTGTTCACTGGGTGTATCCTCTGCATATAGAACAGTGCCTGGCACATAATAGGTGCTGA|ACAAAGAATTCTTGAAGGAAAAGGAGAAATTAGAAATGGAGTTAGCAGCAGTGCGGACTGCAAGTGAGGACCATCGGAGACACATCGAGATCCTGGACCAGGCTTTGAGCAACGCCCAGGCCAGGGTCATCAAGCTGGAAGAGGAG___TTACGAGAGAAGCAAGCATATGTTGAGAAAGTTGAGAAGCTGCAGCAGGCCCTGACCCAGCTGCAGTCTGCATGTGAGAAGCGAGAACAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23312 KDM4D::AMOTL1 ENSG00000186280.7::ENSG00000166025.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA TRUE 3962 TRUE 1496 KDM4D ENSG00000186280.7 protein_coding + + chr11:94973709-94999519:+ chr11:94974068:+ chr11:94706873-94732683:+ chr11:94707232:+ AMOTL1 ENSG00000166025.18 protein_coding + + chr11:94706431-94876748:+ chr11:94850114:+ chr11:94439597-94609913:+ chr11:94583279:+ chr11:94983638,chr11:94983637 chr11:94841515,chr11:94841511 NA NA chr11:94716802,chr11:94716801 chr11:94574681,chr11:94574677 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Angiomotin_C_terminal(100%) |Angiomotin_C(100%) 2 1 5 34 262 ENST00000335080.6 ENST00000317829.12 downstream upstream mismatches(3) CCCCTCCCAGACTCCTTCATTCCGGTACTGCGTGGACGGAAAGCCCCGGGTAGCCGACACCACGTCCCCGGCTAGCGGGAGAGAGCGTGGAAAAGGATTACACCAAACTGTTTAAATCCAACGACTCCTGCTTCCATCCTTTCTCCTGAGCTAGAACCAACAAACCTAGAGAGTTGGGCTTCGGAAAAACTAGTGTTTTCATTTAATTGGATATGAAGAAAGAACAAATATGTACGGGGCAACCACGATCTTTACAAAG|ACAAAGAATTCTTGAAGGAAAAGGAGAAATTAGAAATGGAGTTAGCAGCAGTGCGGACTGCAAGTGAGGACCATCGGAGACACATCGAGATCCTGGACCAGGCTTTGAGCAACGCCCAGGCCAGGGTCATCAAGCTGGAAGAGGAG___TTACGAGAGAAGCAAGCATATGTTGAGAAAGTTGAGAAGCTGCAGCAGGCCCTGACCCAGCTGCAGTCTGCATGTGAGAAGCGAGAACAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23327 RAB11B::RAB11B-AS1 ENSG00000185236.12::ENSG00000269386.6 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11B ENSG00000185236.12 protein_coding + + chr19:8389981-8404434:+ chr19:8390456:+ chr19:8454865-8469318:+ chr19:8455340:+ RAB11B-AS1 ENSG00000269386.6 lncRNA - + chr19:8374372-8390685:- chr19:8386164:+ chr19:8439256-8455569:- chr19:8451048:+ chr19:8391514 chr19:8376929 NA NA chr19:8456398 chr19:8441813 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Ras_family(0%)| Arf(0%),MMR_HSR1(0%),Ras(0%),Roc(0%)| 3 31 0 940 52 ENST00000328024.11 unknown downstream upstream duplicates(1) CTGCGGAGTCGCCGATCCCGCCGGAAGCGCCAGGACAATGGGGACCCGGGACGACGAGTACGACTACCTATTCAAAG|AATCGAGGCCATCAAGCTACAGATGGTCTTAAAAATGGAACCCCAAATGAGTTCAACTAACAACTTCTACTGAGGACCCCTGGACCGACCCACTGGCCCTTCCACTGGCCTAAAGAGTTCCCCTCTGGAGGACACTACAATTGCAGGGCCCCTTCTTCCAGCAGGAAGTAGCTAGAGTGGTCATCGGCCAAATTCCCAACAGCAGTTGGGGTGTTCTGTTTAGAGGGGTGATTGAGAGGTGAAGCCGGCTGGGCTTCTTGGTTGAGTAGGGACTTGGAGAACTTTTCTGTCTAGCTAAAGGATTGCAAATGCACCAATCAGCGCTCTGTGTCTAGCTAAAGGTTTGTAAATGCACCAATCAGCGCTCTGTGTCTAACTAATCGCGTA MGTRDDEYDYLFK|esrpssyrws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23355 ENSG00000291174::ENSG00000285816 ENSG00000291174.1::ENSG00000285816.1 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65455331:+ chr11:65222728-65234191:+ chr11:65222802:+ ENSG00000285816 ENSG00000285816.1 protein_coding + + chr11:65261928-65326543:+ chr11:65326388:+ chr11:65029399-65094014:+ chr11:65093859:+ chr11:65464125 chr11:65324496 NA NA chr11:65231596 chr11:65091967 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication low none none none 0 2 0 197 20 ENST00000702924.1 ENST00000649896.1 downstream upstream none CCCGGGAGCTGCACACTCTTGAAGTGACCGGCCTGGAGACGGTTGCCCAGAGCAAG|GGGTTCAGCTTCAGGCCCTGGTAACGTTTGTGAAGACAGAGGGTCGGGGAACTGAAGGGCCAGCACCTTCTTACCTGTGGGGCCCCTCAGCACTTCAG...GAAGACAAGAAAAAAGGACACCATCCTTAGAGCTTCACCCAGTGGAAGACAGCAACTCACCCTGGACCTGAGCTGAGGCCGGAGTAGCCATGGAAGGAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23375 GPAT4::LEPROTL1 ENSG00000158669.11::ENSG00000104660.19 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3973 TRUE 1497 GPAT4 ENSG00000158669.11 protein_coding + + chr8:41577187-41625001:+ chr8:41578278:+ chr8:41434706-41482520:+ chr8:41435797:+ LEPROTL1 ENSG00000104660.19 protein_coding + + chr8:30095408-30177208:+ chr8:30164111:+ chr8:29952924-30034724:+ chr8:30021627:+ chr8:41579668 chr8:30152178 NA NA chr8:41437187 chr8:30009694 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none |Vps55(0%) 24 301 2 315 1270 ENST00000396987.7 ENST00000520739.5 downstream upstream duplicates(38),mismatches(3) TTGGGCCCGCGGCGGCGGCAAGGGCGGGAGGGAGCGGTCGCCGCGGGATTTGGAGCTGCCTAGCCTCGCGGTCG|TGTGAAGATTGCTCCTGGAGCAGTTGTATGTGTAGAAAGTGAAATCAGAGGAGATGTAACTATCG___GACCTCGGACAGTGATCCACCCTAAAGCAAGAATTATTGCGGAAGCCGGGCCAATAGTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTTATCATAAATGC___TTACCCAGATAATATCACTCCTGACACTGAAGATCCAGAACCAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE leptin receptor overlapping transcript like 1 2 lung cancer, colon cancer epithelial TSG large_deletion 23376 GPAT4::LEPROTL1 ENSG00000158669.11::ENSG00000104660.19 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3973 TRUE 1497 GPAT4 ENSG00000158669.11 protein_coding + + chr8:41577187-41625001:+ chr8:41578278:+ chr8:41434706-41482520:+ chr8:41435797:+ LEPROTL1 ENSG00000104660.19 protein_coding + + chr8:30095408-30177208:+ chr8:30175085:+ chr8:29952924-30034724:+ chr8:30032601:+ chr8:41579668 chr8:30152178 NA NA chr8:41437187 chr8:30009694 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site duplication high none none none 1 21 2 315 1219 ENST00000520258.1 ENST00000520739.5 downstream upstream duplicates(1),mismatches(1) TCCTGACGCAGCTTGGGCCCGCGGCGGCGGCAAGGGCGGGAGGGAGCGGTCGCCGCGGGATTTGGAGCTGCCTAGCCTCGCGGTCG|GACCTCGGACAGTGATCCACCCTAAAGCAAGAATTATTGCGGAAGCCGGGCCAATAGTGATTGGCGAAGGGAACCTAATAGAAGAACAGGCCCTTATCATAAATGC___TTACCCAGATAATATCACTCCTGACACTGAAGATCCAGAACCAAAACCTATGATCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE leptin receptor overlapping transcript like 1 2 lung cancer, colon cancer epithelial TSG large_deletion 23377 GPAT4::LEPROTL1 ENSG00000158669.11::ENSG00000104660.19 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3973 TRUE 1497 GPAT4 ENSG00000158669.11 protein_coding + + chr8:41577187-41625001:+ chr8:41578278:+ chr8:41434706-41482520:+ chr8:41435797:+ LEPROTL1 ENSG00000104660.19 protein_coding + + chr8:30095408-30177208:+ chr8:30177126:+ chr8:29952924-30034724:+ chr8:30034642:+ chr8:41579668 chr8:30152178 NA NA chr8:41437187 chr8:30009694 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site duplication medium none none none 1 0 1 315 1171 ENST00000520258.1 ENST00000520739.5 downstream upstream none CAAAGGCGGGCGCGCGCACGTCCTGACGCAGCTTGGGCCCGCGGCGGCGGCAAGGGCGGGAGGGAGCGGTCGCCGCGGGATTTGGAGCTGCCTAGCCTCGCGGTCG|TTACCCAGATAATATCACTCCTGACACTGAAGATCCAGAACCAAAACCTATGATCATTGGCACCAATAATGTGTTTGAAGTTGGCTGTT___ATTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE leptin receptor overlapping transcript like 1 2 lung cancer, colon cancer epithelial TSG large_deletion 23378 RRS1::SDC2 ENSG00000179041.4::ENSG00000169439.12 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2169 FALSE NA FALSE NA RRS1 ENSG00000179041.4 protein_coding + + chr8:66429014-66430733:+ chr8:66429536:+ chr8:67341249-67342968:+ chr8:67341771:+ SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96593480:+ chr8:97506041-97624018:+ chr8:97605708:+ chr8:66429686,chr8:66429686,chr8:66429684 chr8:96568540,chr8:96568542,chr8:96568535 NA NA chr8:67341921,chr8:67341921,chr8:67341919 chr8:97580768,chr8:97580770,chr8:97580763 NA NA sense sense in-frame CDS CDS/splice-site deletion high none Ribosome_biogenesis_regulatory_protein_(RRS1)(64%)|Syndecan_domain(100%) RRS1(64%)|Syndecan(100%) 90 64 60 262 255 ENST00000320270.4 ENST00000302190.9 downstream upstream duplicates(8),low_entropy(2),mismatches(7) AGCGAGTGAGCCGAGCCGGAGCCATGGAGGGCCAGAGCGTGGAGGAGCTGCTCGCAAAGGCAGAGCAGGACGAGGCAGAGAAGTTGCAACGCATCACGGTGCACAAGGAGCTGGAGCTGCAGTTTGACCTGGGCAACCTGCTGGCGTCGGACCGGAACCCCCCGACCGGGCTGCGGTGCGCCGGACCCACGCCGGAGGCCGAGCTACAGGCCCTGGCGCGGGACAACACGCAACTGCTCATCAACCAGCTGTGGCAGCTGCCCACGGAGCGCGTGGAAGAGGCGATAGTGGCGCGGCTGCCGGAGCCCACCACACGCCTGCCGCGAGAGAAGCCTCTGCCCCGACCGCGGCCACTTACACGCTGGCAGCAGTTCGCGCGCCTCAAGGGCATCCGTCCCAAGAAGAAGACCAACCTGGTGTGGGACGAG|AGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGCTCGG___GAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACC MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDE|RAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23380 DNAJA1::CHST9 ENSG00000086061.16::ENSG00000154080.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2170 TRUE 3974 TRUE 1498 DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33037115:+ chr9:33025271-33039905:+ chr9:33037113:+ CHST9 ENSG00000154080.14 protein_coding - - chr18:26906481-27185308:- chr18:26944366:- chr18:24486445-24765272:- chr18:24524330:- chr9:33038090 chr18:26964968 NA NA chr9:33038088 chr18:24544932 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none DnaJ_C_terminal_domain(98%),DnaJ_central_domain(100%),DnaJ_domain(100%)|Sulfotransferase_family(100%) DnaJ(100%),DnaJ_C(82%),DnaJ_CXXCXGXG(100%)|Sulfotransfer_2(100%) 38 18 21 1210 40 ENST00000330899.5 ENST00000618847.5 downstream downstream duplicates(2),low_entropy(1),mismatches(2) TGTTAGATCAGAAGGACCATGCTGTTTTTACTCG___ACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTCGTTGAAGCACTGTGTGGCTTCCAGAAGCCAATATCTACTCTTGACAACCGAACCATCGTCATCACCTCTCATCCAG___GTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTAATCATCGAATTTAAG|TGAGTACAGAAAAAATCCAGGAACATATCACCAACCAG___AACCCCAAGTTTCACATGCCTGAGGATGTACGAGAAAAAAAGGAAAATCTTCTACTCAATTCTGAGAGATCTACTAGGCTCTTAACAAAGACCAGTCATTC LDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23381 DNAJA1::CHST9 ENSG00000086061.16::ENSG00000154080.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2171 TRUE 3974 TRUE 1498 DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33037115:+ chr9:33025271-33039905:+ chr9:33037113:+ CHST9 ENSG00000154080.14 protein_coding - - chr18:26906481-27185308:- chr18:26917350:- chr18:24486445-24765272:- chr18:24497314:- chr9:33038090 chr18:26964968 NA NA chr9:33038088 chr18:24544932 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none DnaJ_C_terminal_domain(98%),DnaJ_central_domain(100%),DnaJ_domain(100%)|Sulfotransferase_family(100%) DnaJ(100%),DnaJ_C(82%),DnaJ_CXXCXGXG(100%)|Sulfotransfer_2(100%) 4 4 10 1210 77 ENST00000330899.5 ENST00000618847.5 downstream downstream mismatches(1) AGCCAATATCTACTCTTGACAACCGAACCATCGTCATCACCTCTCATCCAG___GTCAGATTGTCAAGCATGGAGATATCAAGTGTGTACTAAATGAAGGCATGCCAATTTATCGTAGACCATATGAAAAGGGTCGCCTAATCATCGAATTTAAG|AACCCCAAGTTTCACATGCCTGAGGATGTACGAGAAAAAAAGGAAAATCTTCTACTCAATTCTGAGAGATCTACTAGGCTCTTAACAAAGACCAGTCATTCACAAGGAGGGGATCAAGCTTTAAGTAAGTCCACAGGGTCACCAACAGAGAAGTTGATTGAAAAACGTCAAGGAGCTAAGACTGTTTTTAACAAGTTCAGCA PISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFK|NPKFHMPEDVREKKENLLLNSERSTRLLTKTSHSQGGDQALSKSTGSPTEKLIEKRQGAKTVFNKFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23382 DNAJA1::CHST9 ENSG00000086061.16::ENSG00000154080.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3974 TRUE 1498 DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33036689:+ chr9:33025271-33039905:+ chr9:33036687:+ CHST9 ENSG00000154080.14 protein_coding - - chr18:26906481-27185308:- chr18:26944366:- chr18:24486445-24765272:- chr18:24524330:- chr9:33038090 chr18:26964968 NA NA chr9:33038088 chr18:24544932 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none DnaJ_C_terminal_domain(88%),DnaJ_central_domain(100%),DnaJ_domain(100%)|Sulfotransferase_family(100%) DnaJ(100%),DnaJ_C(77%),DnaJ_CXXCXGXG(100%)|Sulfotransfer_2(100%) 2 0 8 2071 40 ENST00000330899.5 ENST00000618847.5 downstream downstream mismatches(2) CCAAGAACCAGGACTGGAGCCAGGCGATATTATCATTGTGTTAGATCAGAAGGACCATGCTGTTTTTACTCG___ACGAGGAGAAGACCTTTTCATGTGTATGGACATACAGCTCGTTGAAGCACTGTGTGGCTTCCAGAAGCCAATATCTACTCTTGACAACCGAACCATCGTCATCACCTCTCATCCAG|TGAGTACAGAAAAAATCCAGGAACATATCACCAACCAG___AACCCCAAGTTTCACATGCCTGAGGATGTACGAGAAAAAAAGGAAAATCTTCTACTCAATTCTGAGAGATCTACTAGGCTCTTAACAAAG QEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHP|vSTEKIQEHITNQNPKFHMPEDVREKKENLLLNSERSTRLLT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23384 SDC2::LINC01299 ENSG00000169439.12::ENSG00000254081.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3975 TRUE 1499 SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96602528:+ chr8:97506041-97624018:+ chr8:97614756:+ LINC01299 ENSG00000254081.2 lncRNA - - chr8:65526738-65562781:- chr8:65534864:- chr8:66438973-66475016:- chr8:66447099:- chr8:96603398,chr8:96603395 chr8:65554451,chr8:65554446 NA NA chr8:97615626,chr8:97615623 chr8:66466686,chr8:66466681 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 78 42 42 362 100 ENST00000302190.9 ENST00000520902.2 downstream downstream duplicates(10),mismatches(4) AAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGCTCGG___GAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAGATACCTGCTCAGACAAAG|GTCTGATCAAAGGATGGCACCCAGTACATGTGCTGAATGACTGAATAGGGGCAGAGTtCCTTCCTGGTCCTGAAACGTGGAAATTGATTATAGCACCATGCAGGAGTTTCCCCACCCAGTGAGCTGGGGCAGAAGAG___GGTCTCACTTTGTCACCCAGGCTGGAATGCAGTGGCACAA ASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23385 SDC2::LINC01299 ENSG00000169439.12::ENSG00000254081.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3975 TRUE 1499 SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96602528:+ chr8:97506041-97624018:+ chr8:97614756:+ LINC01299 ENSG00000254081.2 lncRNA - - chr8:65526738-65562781:- chr8:65527585:- chr8:66438973-66475016:- chr8:66439820:- chr8:96603398,chr8:96603395 chr8:65554451,chr8:65554446 NA NA chr8:97615626,chr8:97615623 chr8:66466686,chr8:66466681 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 9 9 8 362 230 ENST00000302190.9 ENST00000520902.2 downstream downstream duplicates(1) GCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGCTCGG___GAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAGATACCTGCTCAGACAAAG|TGGCTGGAGGTGAAGTTCAGAGATACGGTGTCTTTCCTGAGTTGTGCAGCTCACGCATGGAGGGATCAGGATGGGAACTGAAGCCTGCATGGCTCAAAGTCTTTGCTTTGAAGTGCTGCAAATATGGCTTCCTGAGGAGGACTGCCCTGGACTGCAAATTTGTATTACACA ASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTK|wlevkfrdtvsflscaahawrdqdgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23386 SDC2::LINC01299 ENSG00000169439.12::ENSG00000254081.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3975 TRUE 1499 SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96602528:+ chr8:97506041-97624018:+ chr8:97614756:+ LINC01299 ENSG00000254081.2 lncRNA - - chr8:65526738-65562781:- chr8:65533124:- chr8:66438973-66475016:- chr8:66445359:- chr8:96603398,chr8:96603395 chr8:65554451,chr8:65554446 NA NA chr8:97615626,chr8:97615623 chr8:66466686,chr8:66466681 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 3 14 362 139 ENST00000302190.9 ENST00000520902.2 downstream downstream none TAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGCTCGG___GAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAGATACCTGCTCAGACAAAG|GGTCTCACTTTGTCACCCAGGCTGGAATGCAGTGGCACAATGTCGGTTCACTTCAACCTCAACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGTCTCCCAAGTAGCTGAAATTACAGGAGCCTACCACCACGTCTGGCTAATTTTTGTATTTTTAGTgGAGATGGGGTTTCACTATGTTGGCCAGGCTGGTTTTCAACTCCTGACCTTAGGTGATCCACCTGCCTCAG KDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTK|gltlsprlecsgtmsvhfnlnlpgssdpptsvsqvaeitgayhhvwlifvflvemgfhyvgqagfqlltlgdppas NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23387 FZD3::NRG1 ENSG00000104290.11::ENSG00000157168.22 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FZD3 ENSG00000104290.11 protein_coding + + chr8:28494205-28574267:+ chr8:28503202:+ chr8:28351722-28431784:+ chr8:28360719:+ NRG1 ENSG00000157168.22 protein_coding + - chr8:31639222-32855666:+ chr8:32210037:- chr8:31496738-32713184:+ chr8:32067553:- chr8:28517252,chr8:28517248 chr8:32222280,chr8:32222279 NA NA chr8:28374769,chr8:28374765 chr8:32079796,chr8:32079795 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Fz_domain(33%)| Fz(0%)| 36 70 48 190 126 ENST00000537916.2 unknown downstream downstream duplicates(4),inconsistently_clipped(1),low_entropy(3),mismatches(7) ATAGGCCTGATCATCTGAATCTCCTTCAGACCCAGGAAGGATGGCTATGACTTGGATTGTCTTCTCTCTTTGGCCCTTGACTGTGTTCATGGGGCATATAGGTGGGCACAGTTTGTTTTCTTGTGAACCTATTACCTTGAGGATGTGCCAAGATTTGCCTTATAATACTACCTTCATGCCTAATCTTCTGAATCATTATGACCAACAGACAGCAGCTTTGGCAATGGAG|GAAGCTTCTGAAGAAATTTATTTACAGAAGATAAATCTGAAGAACTAAAAAATCATCCCTTCAAAATTGAGAGAAGGACTCAATCCTTTCCAAACAGGTTTACCCCAGTTGACTTCCTTTCCTGTATAACAAAGAGACCCAGAAGCTGAAGGTGGCTTCCTTGCTTCaTCTCCATGTGCCTCTGTGCAGCCATCCCATCAAAACTGATCACTGAGCCTTCCTGTCCTCTAATGTAACTTACCATCAGAGAAAGA MAMTWIVFSLWPLTVFMGHIGGHSLFSCEPITLRMCQDLPYNTTFMPNLLNHYDQQTAALAME|easeeiylqkinlkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23388 PRKDC::HAS2-AS1 ENSG00000253729.9::ENSG00000248690.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKDC ENSG00000253729.9 protein_coding - - chr8:47773111-47960178:- chr8:47849154:- chr8:48685672-48872738:- chr8:48761715:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888825:+ chr8:122651533-123006424:+ chr8:122901064:+ chr8:47848796,chr8:47848796,chr8:47848800 chr8:121888089,chr8:121888093,chr8:121888085 NA NA chr8:48761357,chr8:48761357,chr8:48761361 chr8:122900328,chr8:122900332,chr8:122900324 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none DNA-dependent_protein_kinase_catalytic_subunit__CC3(100%)| DNAPKcs_CC5(21%),NUC194(100%)| 33 43 33 345 93 ENST00000314191.7 ENST00000664717.1 upstream upstream duplicates(5),mismatches(4) GTGTGCTTGAACAAAGTGACCAAGAGCTTCCCTCCTCTTGCAGACAG___GTTCATGAATGCTGTGTTCTTTCTGCTGCCAAAATTTCATGGAGTGTTGAAAACACTCTGTCTGGAGGTGGTACTTTGTCGTGTGGAGGGAATGACAGAGCTGTACTTCCAGTTAAAGAGCAAGGACTTCGTTCAAGTCATGAGACATAG|ATTTTGGTATCTGACTGATGCTGTCTTCGTGGAATGAGTTAGGAAAGAGTCCCTCCTCGTCAACTGTTGGGAATACATTCAGCAGGGTTGGTATCATTGCATGTCTGGCAGAATTTGACTAGGAATCCATCTGGTCCAGGATTTTTTTTGTTG VCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVVLCRVEGMTELYFQLKSKDFVQVMRHr|fwyltdavfve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE DNA-dependent protein kinase catalytic subunit Atypical PIKK DNAPK P78527 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23394 PHF20L1::ENSG00000286763 ENSG00000129292.21::ENSG00000286763.1 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF20L1 ENSG00000129292.21 protein_coding + + chr8:132775358-132848807:+ chr8:132839582:+ chr8:133787604-133861052:+ chr8:133851827:+ ENSG00000286763 ENSG00000286763.1 lncRNA + - chr8:80894016-80930081:+ chr8:80894832:- chr8:81806251-81842316:+ chr8:81807067:- chr8:132839789,chr8:132839787 chr8:80895561,chr8:80895563 NA NA chr8:133852034,chr8:133852032 chr8:81807796,chr8:81807798 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD_finger_protein_20-like_protein_1(100%),Protein_of_unknown_function_(DUF3776)(100%),mbt_repeat(100%)| DUF3776(100%),MBT(100%),PHD20L1_u1(100%),Tudor_2(100%),Tudor_3(100%)| 41 31 29 155 74 ENST00000395386.7 unknown downstream downstream mismatches(8) GCTTGTGTTGGCAACACAGCGTGTGCATGGGGCTGCTGGAGGAGAGCATTCCAGAGCAGTACATCTGCTATATCTGCCGGGACCCACCAG___GTCAGAGGTGGAGTGCAAAATATCGTTATGATAAGGAGTGGTTGAATAATGGGAGAATGTGCGGGTTATCATTTTTCAAAGAAAATTATTCTCATCTCAATGCCAAAAAGATAGTTTCTACACATCACCTGCTTGCTGATGTCTATGGTGTTACAGAAGTGCTACACGGGCTACAGCTGAAGATTGGAATACTAAA|GAACTCAGTTGTAACTAGTCTCCTTCCTGAAAACCTACTGTCAAAAGAAAAATAATTAAACAAATTCACACTAAGATGTAAATGACTATCTTTTAACCTCATCATTTCAAAGGTACTTCCATTCTAACCAGACTAAATCTGAATAAATAAATTCTCAGTTGTGGCACTTTGGATATCAACTCTACTGATTTGGAGGAGGACTTTCAAGTCTTCTGAATGCTTTGAAACTCAAAGACTCTGACATGAGAACACTCACC LCWQHSVCMGLLEESIPEQYICYICRDPPGQRWSAKYRYDKEWLNNGRMCGLSFFKENYSHLNAKKIVSTHHLLADVYGVTEVLHGLQLKIGILk|nsvvtsllpenllskek* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23395 APTX::DNAJA1 ENSG00000137074.20::ENSG00000086061.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2175 TRUE 3978 TRUE 1500 APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:33024804:- chr9:32886599-33025128:- chr9:33024802:- DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33038685:+ chr9:33025271-33039905:+ chr9:33038683:+ chr9:33024375,chr9:33024378 chr9:33038231,chr9:33038228 NA NA chr9:33024373,chr9:33024376 chr9:33038229,chr9:33038226 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |DnaJ_C_terminal_domain(1%) |DnaJ_C(0%) 26 35 29 192 1114 ENST00000673487.1 ENST00000330899.5 upstream upstream duplicates(4),mismatches(12) GCGGCTTCCCGGCGCTCGTGGAATCTTCTGGAGCCCTTTTCTCCACTCAGCGAGCCTGAGAGTGCGGAAGTCTCCGGCTGGTGGGGCATGGCCCAGGAGCACTGCAAGTCCTAGGGTTCCCAAACCTGTGGGGTGGCCGCCTcGGCCCGCGAGGGCGGGAAGGGCTCGgGTACAGTGACCCAGCGGGAGCTGTGTGTGAACGGGAAAGCTCTTGGAACAGTCTTGCCCCCaCCC???????TCTTACGGGCGCCTCTTCTCTTTTTGGGAACGTGGCGAGCAAAAAATGCTTGAGCCAG|GTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACCCGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGACCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGCGCCACTACAATGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23396 APTX::DNAJA1 ENSG00000137074.20::ENSG00000086061.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3978 TRUE 1500 APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:33024999:- chr9:32886599-33025128:- chr9:33024997:- DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33038686:+ chr9:33025271-33039905:+ chr9:33038684:+ chr9:33024375,chr9:33024378 chr9:33038231,chr9:33038228 NA NA chr9:33024373,chr9:33024376 chr9:33038229,chr9:33038226 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |DnaJ_C_terminal_domain(1%) |DnaJ_C(0%) 1 1 7 287 1114 ENST00000673487.1 ENST00000330899.5 upstream upstream mismatches(2) GCTAGCGCGGCTTCCCGGCGCTCGTGGAATCTTCTGGAGCCCTTTTCTCCACTCAGCGAGCCTGAGAGTGCGGAAGTCTCCGGCTGGTGGGGCATGGCCCAGGAGCACTG|TAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTCTTTGCTGGAAAAACTCCTACCCGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGACCAAGTAGAACTGGTGGACTTTGATCCAAATCAGGAAAGACGGCGCCACTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23397 APTX::DNAJA1 ENSG00000137074.20::ENSG00000086061.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3978 TRUE 1500 APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:33025023:- chr9:32886599-33025128:- chr9:33025021:- DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33038685:+ chr9:33025271-33039905:+ chr9:33038683:+ chr9:33024375,chr9:33024378 chr9:33038231,chr9:33038228 NA NA chr9:33024373,chr9:33024376 chr9:33038229,chr9:33038226 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |DnaJ_C_terminal_domain(1%) |DnaJ_C(0%) 1 1 1 249 1114 ENST00000436040.7 ENST00000330899.5 upstream upstream none TGGTGCTAGCGCGGCTTCCCGGCGCTCGTGGAATCTTCTGGAGCCCTTTTCTCCACTCAGCGAGCCTGAGAGTGCGGAAGTCTCCGGCTG|GTAAACTTTCCTGAGAATGGCTTTCTCTCTCCTGATAAACTGTaTTTGCTGGAAAAACTCCTACCCGAGAGGAAGGAAGTGGAAGAGACTGATGAGATGGACCAAGT...GATCCAAATCAGGAAAGACGGCGCCACTACAATGGAGAAGCATATGAGGATGATGAACATCATCCCAGAGGTGGTGTTCAGTGTCAGACCTCTTAATGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23402 MMP16::CNGB3 ENSG00000156103.16::ENSG00000170289.13 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2176 TRUE 3980 TRUE 1501 MMP16 ENSG00000156103.16 protein_coding - - chr8:88032011-88328025:- chr8:88327075:- chr8:89044239-89340254:- chr8:89339304:- CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86671098:- chr8:87566205-87755903:- chr8:87683326:- chr8:88317698,chr8:88317703 chr8:86722672,chr8:86722674 NA NA chr8:89329927,chr8:89329932 chr8:87734900,chr8:87734902 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Putative_peptidoglycan_binding_domain(3%)|Cyclic_nucleotide-binding_domain(100%) PG_binding_1(0%)|Copine(100%),cNMP_binding(100%) 32 20 24 106 90 ENST00000286614.11 ENST00000681746.1 upstream downstream duplicates(7),inconsistently_clipped(1),low_entropy(1),mismappers(2),mismatches(5) CGAAGGGGAGCTCGTCCATCCATTGAAGCACAGTTCACTATGATCTTACTCACATTCAGCACTGGAAGACGGTTGGATTTCGTGCATCATTCGGGGGTGTTTTTCTTGCAAACCTTGCTTTGGATTTTATGTGCTACAGTCTGCGGAACGGAGCAGTATTTCAATGTGGAG|CCCACAAAACAAACCGCCTGCAGCTCCTGTTATAAATGAGTATGCCGATGCCCAGCTACACAACCTGGTGAAAAGAATGCGTCAAAGAACAGCCCTCTACAAGAAAAAGTTGGTAGAGGGAGATCTCTCCTCACCCGAAGCCAGCCCACAAACTG___CAAAGCCCACGGC MILLTFSTGRRLDFVHHSGVFFLQTLLWILCATVCGTEQYFNVE|ptkqtacsscyk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23403 MMP16::CNGB3 ENSG00000156103.16::ENSG00000170289.13 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3980 TRUE 1501 MMP16 ENSG00000156103.16 protein_coding - - chr8:88032011-88328025:- chr8:88327075:- chr8:89044239-89340254:- chr8:89339304:- CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86704402:- chr8:87566205-87755903:- chr8:87716630:- chr8:88317698,chr8:88317703 chr8:86722672,chr8:86722674 NA NA chr8:89329927,chr8:89329932 chr8:87734900,chr8:87734902 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Putative_peptidoglycan_binding_domain(3%)|Cyclic_nucleotide-binding_domain(100%) PG_binding_1(0%)|Copine(100%),cNMP_binding(100%) 14 14 35 106 28 ENST00000286614.11 ENST00000519777.1 upstream downstream duplicates(4),mismatches(2) CGAAGGGGAGCTCGTCCATCCATTGAAGCACAGTTCACTATGATCTTACTCACATTCAGCACTGGAAGACGGTTGGATTTCGTGCATCATTCGGGGGTGTTTTTCTTGCAAACCTTGCTTTGGATTTTATGTGCTACAGTCTGCGGAACGGAGCAGTATTTCAATGTGGAG|TTGACCCTAGAACAACAAGAATTTGAACTGTGGTACCACTTATCCCTGGATTTTCTTCCTTCTCTGCCATCTGTGAGACAGCAACACGATCTCTCCTCTTCTTGCTCCTCCTCAGCCTACTCAACATGAGGACAACTGGATGCAGACCTTTCTGATGATCCACTTCCACTTAGGCAATAGTAAATATATG...CTTTATGATTTTAATAACATTTTCT MILLTFSTGRRLDFVHHSGVFFLQTLLWILCATVCGTEQYFNVE|ltleqqefelwyhlsldflpslpsvrqqhdlssscsssayst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23406 ECI1::MIR3677HG ENSG00000167969.13::ENSG00000260778.5 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ECI1 ENSG00000167969.13 protein_coding - - chr16:2239402-2252300:- chr16:2243046:- chr16:2289403-2302301:- chr16:2293047:- MIR3677HG ENSG00000260778.5 lncRNA + - chr16:2268155-2273418:+ chr16:2270532:- chr16:2318156-2323419:+ chr16:2320533:- chr16:2242229,chr16:2242284 chr16:2273201,chr16:2273253 NA NA chr16:2292230,chr16:2292285 chr16:2323202,chr16:2323254 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Enoyl-CoA_hydratase/isomerase(79%)| ECH_1(73%),ECH_2(56%)| 47 18 6 1078 94 ENST00000570258.5 unknown upstream downstream duplicates(5),mismatches(1) CCCTGACCTGTGACTACCGCATCCTGGCGGACAACCCCAGGTACTGCATAGGACTCAATGAGACCCAGCTGGGCATCATCGCCCCTTTCTG___GTTGAAAGACACCCTGGAGAACACCATCGGGCACCGGGCGGCGGAGCGTGCCCTGCAGCTGGGGCTGCTCTTCCCGCCGGCGGAGGCCCTGCAGGTGGGCATAGTGGACCAGGTGGTCCCGGAGGAGCAGGTGCAGAGCACTGCGCTGTCAGCGATAGCCCAGTGGATGGCCATTCCAG|ACATGCTTCTGCTGATCCTCAAAATGGCAAAAGCCAGGATGCTCAATTCTCAAAGCTCAACAGCTGATGGCACATTTGATAACAAAAATCAGTAATATTTAGAAACAAATTTGATTAAATTCGT LTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP|dmlllilkmakarmlnsqsstadgtfdnknq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23419 RIMS2::ENSG00000289405 ENSG00000176406.25::ENSG00000289405.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103697296:+ chr8:104512838-105266658:+ chr8:104709524:+ ENSG00000289405 ENSG00000289405.2 lncRNA - - chr8:134715820-134832014:- chr8:134717401:- chr8:135728063-135844257:- chr8:135729644:- chr8:103704235,chr8:103704234,chr8:103704236 chr8:134732283,chr8:134732284,chr8:134732282 NA NA chr8:104716463,chr8:104716462,chr8:104716464 chr8:135744526,chr8:135744527,chr8:135744525 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none FYVE-type_zinc_finger(83%)| FYVE_2(73%)| 10 10 5 165 20 ENST00000666250.1 ENST00000688995.1 downstream downstream duplicates(2) GGAGCAGTCCGTGCTCAA___AAAACTGCATCAGCAGTTTGAAATGTATAAAGAGCAGGTAAAGAAGATGGGAGAAGAATCACAGCAACAGCAAGAACAGAAGGGTGATGCGCCAACCTGTGGTATCTGCCACAAAACAAAGTTTGCTGATGGATGTGGCCATAACTGTTCATATTGCCAAACAAAGTTCTGTGCTCGTTGTGGAGGTCGAGTGTCATTACGCTCAAACAAG|GACTGCCCTTATTGGACCACAGAGAGAAAGATGATCTCCTTCCCAGGTGCACTGAGTGGCAGCCTTGGGCCTGGACTGGTGGGTTCTTGGTGGCAGCAGGCATTTGCTGGTGGGGGCTCCCTCAGACCATTTTCAACTATTAAGTCAAGAGGACTTACAGCAAGTTCTTGCAATCT EQSVLKKLHQQFEMYKEQVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNK|dcpywtterkmisfpgalsgslgpglvgswwqqafagggslrpfstiksrgltasscn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23420 SEC16A::NIPAL2 ENSG00000148396.19::ENSG00000104361.10 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEC16A ENSG00000148396.19 protein_coding - - chr9:136440096-136483759:- chr9:136459757:- chr9:139334548-139378211:- chr9:139354209:- NIPAL2 ENSG00000104361.10 protein_coding - + chr8:98189826-98294393:- chr8:98249256:+ chr8:99202054-99306621:- chr8:99261484:+ chr9:136459569,chr9:136459572 chr8:98236474,chr8:98236471 NA NA chr9:139354021,chr9:139354024 chr8:99248702,chr8:99248699 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Sec23-binding_domain_of_Sec16(46%),Vesicle_coat_trafficking_protein_Sec16_mid-region(100%)| Sec16(100%),Sec16_C(46%)| 7 7 11 261 21 ENST00000290037.10 unknown upstream upstream none GTGGGTGACGCTGTCACAGGCCGTGAGGTGCCTGGTGAGCCCAGCTGTGTGGAATTGAAATGGCGCTGGCTTCCGGGGATGAGGCTTCGTTTTGTTTTTCCTCATGTTAGTGCTGTGGAGACGAGAAATGGGGAGATTGGAGGCCGCACCTCGCCATGGTCTTGTCCAACTTGAACAACAACATGGACGTCGAGTCCAGGACGATGGCTACCATGGGCGACACTCTGG|AACACCTATGAATCTACCTGTAAAACTAATGTTGGACAAATGCTGCCTGAAGCTGAGCACGTCAGTGAGGAACAGCAGGACACACAGAGAGAGGGAAAGAAAGCACAGAAGAAAGATGCTTCAAGAAAGGAAAACATGGGTAGAGG g*rchrp*gaw*aqlcgiemalasgdeasfcfssc*CCGDEKWGDWRPHLAMVLSNLNNNMDVESRTMATMGDTL|ehl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23421 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25252194:- chr2:25450724-25565459:- chr2:25475063:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24919184:- chr2:25042038-25143106:- chr2:25142053:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(100%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(100%) |AC_N(100%),Guanylate_cyc(100%) 1 14 9 46 78 ENST00000380746.8 ENST00000679454.1 upstream downstream mismappers(1),mismatches(2) CATCGCCCCCTTCCCCTCCCCCAAGACGGGCAGCTACTTCCAGAGCTTCAGGGCCGCGGCTCACACCTGAGCGCGACTGCAGAGGGGCTGCACCTGGCCTTATGG|TTCTAGCTGATCAGTGCTACCTGTGCTCTGGAAACCCGCTCTGCGTTCCTGCTGGAGGTGGCCTCCCCTCCGCCCCAGACAAGAAGAGGCCCTCAGCCCTCCCCCGGTCTCAGAGAGCCCTGAGAGGAGGCCCAGTCCAGAGCTCTTCCTCCG...GTCCACTTCTCTAGGGCCAGTAGCAGACACCAGCCAGTATGCCGAGGAACCAGGGCTTCTCCGAGCCCGAATACTCGGCCGAGTACTCAGCCGAGTACTCCGTCAGCCTGCCCTCCGACCCTGACCGCGG M|vladqcylcsgnplcvpaggglpsapdkkrpsalprsqralrggpvqssss NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 23422 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25274941:- chr2:25450724-25565459:- chr2:25497810:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24919184:- chr2:25042038-25143106:- chr2:25142053:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(100%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(100%) |AC_N(100%),Guanylate_cyc(100%) 4 6 7 77 78 ENST00000264709.7 ENST00000679454.1 upstream downstream mismappers(1),mismatches(1) CCGGGGCCGGCTGCGGGGTGGCTTGGGCTGGGAGTCCAGCCTCCGTCAGCGGCCCATGCCGAGGCTCACCTTCCAGGCGGGGGACCCCTACTACATCAGCAAGCGCAAGCGGGACGAGTGGCTGGCACGCTGGAAAAGGGAG|TTCTAGCTGATCAGTGCTACCTGTGCTCTGGAAACCCGCTCTGCGTTCCTGCTGGAGGTGGCCTCCCCTCCGCCCCAGACAAGAAGAGGCCCTCAGCCCTCCCCCGGTCTCAGAGAGCCCTGAGAGGAGGCCCAGTCCAGAGCTCTTCCTCCGTTCCCAGTCCACTTCTCTAGGGCCAGTAGCAGACACCAGCCAGTATGCCGAGGAACCAGGGCTTCTCCGAGCCCGAATACTCGGCCGAGTACTCAGCCGAGTACTCCGTCAGCCTGCCCTCCGACCCTGACCGCGGGGTGGGCCGGACC RGRLRGGLGWESSLRQRPMPRLTFQAGDPYYISKRKRDEWLARWKRE|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 23423 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25274941:- chr2:25450724-25565459:- chr2:25497810:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24872719:- chr2:25042038-25143106:- chr2:25095588:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Adenylate_and_Guanylate_cyclase_catalytic_domain(100%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(28%) |AC_N(39%),Guanylate_cyc(100%) 3 2 4 77 194 ENST00000264709.7 ENST00000679454.1 upstream downstream mismappers(1),mismatches(1) CGGAGAGGAGCAGGAGGAGCCGCGTGGCAAGGAGGAGCGCCAAGAGCCCAGCACCACGGCACGGAAGGTGGGGCGGCCTGGGAGGAAGCGCAAGaAaCC...GAGCCCCTGCAGAAGCGG___GCAAAGAACAGAAGGAGACCAACATCGAATCCATGAAAATGGAG___GGCTCCCGGGGCCGGCTGCGGGG?GGCTTGGGCTGGGAGTCCAGCCTCCGTCAGCGGCCCATGCCGAGGCTCACCTTCCAGGCGGGGGACCCCTACTACATCAGCAAGCGCAAGCGGGACGAGTGGCTGGCACGCTGGAAAAGGGAG|ATCCTGGCCAACGTCTTCCTCTACCTGTGCGCCATCGCTGTGGGCATCATGTCCTACTACATGGCTGACCGCAAGCACCGCAAGGCCTTCCTGGAGGCCCGCCA...AAGAGCAGAGCCAGCAGCAG___GAGAACCTCATGCTTTCCATCCTGCCCAAGCACGTGGCTGACGAGATGCTGAAAGACATGAAGAAAGACGAGAGCCAGAAGGACCAGCAGCAGTTCAACACCATGTACATGTACCGTCACGAGAAC APAEAGKEQKETNIESMKMEGSRGRLRGGLGWESSLRQRPMPRLTFQAGDPYYISKRKRDEWLARWKRE|ILANVFLYLCAIAVGIMSYYMADRKHRKAFLEAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 23424 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25274941:- chr2:25450724-25565459:- chr2:25497810:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24842384:- chr2:25042038-25143106:- chr2:25065253:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion medium none |Adenylate_and_Guanylate_cyclase_catalytic_domain(100%),Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(8%) |AC_N(0%),Guanylate_cyc(100%) 0 1 2 77 349 ENST00000264709.7 ENST00000679454.1 upstream downstream mismappers(1) CAAGCGCAAGCGGGACGAGTGGCTGGCACGCTGGAAAAGGGAG|GAGAACCTCATGCTTTCCATCCTGCCCAAGCACGTGGCTGACGAGATGCTGAAAGACA...AGCAGTTCAACACCATGTACATGTACCGTCACGAGAACGTCAG___CATCCTCTTTGCCGACATCGTGGGCTTTACCCAGCTGTCTTCTGCCTGCAGTGCCCAGGAGCTTGTGAAGCTGCTCAACGAGCTCTTTGCCCGCTTTGACAAGCTGGCAGCT___AAATACCACCAGCTGCGGATTAAGATCCTGGGCGACTGCTAC KRKRDEWLARWKRE|ENLMLSILPKHVADEMLKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 23425 RMDN1::ZFPM2-AS1 ENSG00000176623.12::ENSG00000251003.9 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3986 TRUE 1503 RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86514242:- chr8:87480486-87526586:- chr8:87526471:- ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105875092:- chr8:106558317-107072752:- chr8:106887320:- chr8:86507152,chr8:86507156 chr8:105875675,chr8:105875676 NA NA chr8:87519381,chr8:87519385 chr8:106887903,chr8:106887904 NA NA sense sense unknown 5'UTR/splice-site intron duplication high none none none 4 5 8 21 20 ENST00000523370.5 unknown upstream downstream none ATCAGCCCATCCGCAGGGAGCTGACTCCGGGCTGCATGTCAGCTCCTTGCCAGTAGGCTGGCGCTTCGAGGCCATTCTGGAGGCCAGTCGCTTACTGAAAAGGCAAAACTGACTTTAAG|TTTTTGAAGTCTCGTCATGTATCTTCCTAAAAGCAAAACTCTATTCTACTATTGGCTCAACAAGGCCAAAGACAGACATGGCTCTCATGAAGACCAGTTTCAGCAATATAGGCTCTACCAGGAG___GTGGAATGTTCTTCCTTTTTTCCAAATGTGCCTTACCAAATATATAAGTAAAGCAATTATTCACTTTCCCGGTTGAAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23426 RMDN1::ZFPM2-AS1 ENSG00000176623.12::ENSG00000251003.9 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3986 TRUE 1503 RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86514242:- chr8:87480486-87526586:- chr8:87526471:- ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105798442:- chr8:106558317-107072752:- chr8:106810670:- chr8:86507152,chr8:86507156 chr8:105875675,chr8:105875676 NA NA chr8:87519381,chr8:87519385 chr8:106887903,chr8:106887904 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 1 21 5 ENST00000523370.5 ENST00000509144.2 upstream downstream none ATCAGCCCATCCGCAGGGAGCTGACTCCGGGCTGCATGTCAGCTCCTTGCCAGTAGGCTGGCGCTTCGAGGCCATTCTGGAGGCCAGTCGCTTACTGAAAAGGCAAAACTGACTTTAAG|ATTCTCACTGTG...CACTGCAACCTCTACCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG___GTGAGGAGACTGGTGTTAAGTAACTCGCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23432 UBXN8::BMP1 ENSG00000104691.16::ENSG00000168487.20 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2179 TRUE 3988 TRUE 1504 UBXN8 ENSG00000104691.16 protein_coding + + chr8:30729131-30767006:+ chr8:30763347:+ chr8:30586648-30624522:+ chr8:30620863:+ BMP1 ENSG00000168487.20 protein_coding + + chr8:22165140-22212326:+ chr8:22179705:+ chr8:22022653-22069839:+ chr8:22037218:+ chr8:30765897,chr8:30765897,chr8:30765897 chr8:22177945,chr8:22177949,chr8:22177942 NA NA chr8:30623413,chr8:30623413,chr8:30623413 chr8:22035458,chr8:22035462,chr8:22035455 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none UBX_domain(36%)|Astacin_(Peptidase_family_M12A)(21%),CUB_domain(100%),Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%) RNase_H(100%),UBX(44%)|Astacin(3%),CUB(100%),EGF_CA(100%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 3 6 7 39 41 ENST00000620074.5 ENST00000520970.5 downstream upstream mismatches(2) GCCCACATGCAAGGAG___...AAGAACCTTCTCAAACAGCAGAAGAA___GTAGTTACTGTTGCTCTCCGATGTCCCAGTGGGAATGTCCTGAGGAGAAGGTTTTTGAAGTCCTACAGCTCACAG|GGGCATCTTCCTGGATACCATTGTCCCCAAGTATGAGGTGAACGGGGTGAAACCTCCCATTGGCCAAAGGACACGGCTCAGCAAGGGGGACATTGCCCAAGCCCGCAAGCTTTACAAGTGCCCAG___CCTGTGGAGAGACCCTGCAAGACAGCACAG...ACTATGTGGAGGTCCGAGATGGCTTCTGGAGGAAGGCGCCCCTCCGAG EPSQTAEEVVTVALRCPSGNVLRRRFLKSYSSQ|ghlpgyhcpqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23433 UBXN8::BMP1 ENSG00000104691.16::ENSG00000168487.20 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3988 TRUE 1504 UBXN8 ENSG00000104691.16 protein_coding + + chr8:30729131-30767006:+ chr8:30763347:+ chr8:30586648-30624522:+ chr8:30620863:+ BMP1 ENSG00000168487.20 protein_coding + + chr8:22165140-22212326:+ chr8:22192049:+ chr8:22022653-22069839:+ chr8:22049562:+ chr8:30765897,chr8:30765897,chr8:30765897 chr8:22177945,chr8:22177949,chr8:22177942 NA NA chr8:30623413,chr8:30623413,chr8:30623413 chr8:22035458,chr8:22035462,chr8:22035455 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none UBX_domain(36%)|CUB_domain(93%),Calcium-binding_EGF_domain(100%),Coagulation_Factor_Xa_inhibitory_site(100%) RNase_H(100%),UBX(44%)|CUB(27%),EGF_CA(100%),FXa_inhibition(100%),cEGF(100%),hEGF(100%) 3 0 3 39 49 ENST00000620074.5 ENST00000520970.5 downstream upstream mismatches(1) CCCACATGCAAGGAG___ATTCCTGATTTACCTGAAGAACCTTCTCAAACAGCAGAAGAA___GTAGTTACTGTTGCTCTCCGATGTCCCAGTGGGAATGTCCTGAGGAGAAGGTTTTTGAAGTCCTACAGCTCACAG|ATCATCCTGAACTTCACGTCCCTGGACCTGTACCGCAGCCGCCTGTGCTGGTACGACTATGTGGAGGTCCGAGATGGCTTCTGGAGGAAGGCGCCCCTCCGAG PTCKEIPDLPEEPSQTAEEVVTVALRCPSGNVLRRRFLKSYSSQ|IILNFTSLDLYRSRLCWYDYVEVRDGFWRKAPLR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23434 LZTS1::LINC02055 ENSG00000061337.16::ENSG00000254101.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2180 FALSE NA FALSE NA LZTS1 ENSG00000061337.16 protein_coding - - chr8:20246165-20303963:- chr8:20303740:- chr8:20103676-20161474:- chr8:20161251:- LINC02055 ENSG00000254101.8 lncRNA + + chr8:135859369-137092183:+ chr8:136382779:+ chr8:136871612-138104426:+ chr8:137395022:+ chr8:20263657,chr8:20263662,chr8:20263664,chr8:20263662 chr8:136330540,chr8:136330535,chr8:136330535,chr8:136330536 NA NA chr8:20121168,chr8:20121173,chr8:20121175,chr8:20121173 chr8:137342783,chr8:137342778,chr8:137342778,chr8:137342779 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 5 5 5 52 38 ENST00000381569.5 ENST00000650445.2 upstream upstream duplicates(1),mismatches(1) CGCGCCTGGAGCTGGCGGGTTGGCAGCGGCCGGGCGGGGAGGCCGAAAGTTTCTCTGCCCGCCTCGGCCAGTGAGTGGGAGCCGGGAGCTGCATCCCGCGCAGTGGGACCGGCCCGGCCCGCTCAGCAGCTCTGGAAAAAGAGAGACGGGAACACACCGGGAAACACTGGGAAAAAAAAAAAGTCTCAAGTGCGCCCGAGGCGCAGGGGGCAG|TCTCTTCTGAGGTGTAAGAACACAGCACTCTTCCCCTCTGAAGGATGTAGCAACGACATGCCATCTTGGACACAGACCCAGCTCTCACCCAACACCAAATCTGCTTGTGCCTTGATCTTGGACTTACAACCTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23440 CDK8::FGF14 ENSG00000132964.13::ENSG00000102466.17 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2182 FALSE NA FALSE NA CDK8 ENSG00000132964.13 protein_coding + + chr13:26254104-26420982:+ chr13:26353880:+ chr13:26828241-26995119:+ chr13:26928017:+ FGF14 ENSG00000102466.17 protein_coding - - chr13:101710804-102402457:- chr13:101875296:- chr13:102363154-103054807:- chr13:102527646:- chr13:26372923 chr13:102028465 NA NA chr13:26947060 chr13:102680815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(40%)|Fibroblast_growth_factor(100%) PK_Tyr_Ser-Thr(71%),Pkinase(68%)|FGF(100%) 3 4 7 152 16 ENST00000536792.5 ENST00000376131.9 downstream downstream none AGAGCTTAAGCATCCAAACGTCATTTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGTGGCTTCTGTTTGACTATGCTGAACATGACCTCTGG___CATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGGTGTTGCACAGAGATTTG|ATCCCCAGCTCAAGGGTATAGTGACCAGGTTATATTGCAGGCAAGGCTACTACTTGCAAATGCACCCCGATGGAGCTCTCGATGGAACCAAGGATGACAGCACTAATTCTA___CACTCTTCAACCTCATACCAGTGGGACTACGTGTTGTTGCCATCCAGGGAGTGAAAACAGGGTTGTATATAGCCATGAATGGAGAAGGTTACCTCTACCCATCA___GAACTTTTTACCCCTGAATGCAAG ELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDL|ipssrv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 8 CMGC CDK CDK8 P49336 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23441 FBXW7::NAALADL2 ENSG00000109670.17::ENSG00000177694.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXW7 ENSG00000109670.17 protein_coding - - chr4:152320544-152536092:- chr4:152534941:- chr4:153241696-153457244:- chr4:153456093:- NAALADL2 ENSG00000177694.16 protein_coding + - chr3:174438573-175810548:+ chr3:175056549:- chr3:174156363-175528336:+ chr3:174774339:- chr4:152534046,chr4:152534058 chr3:175058510,chr3:175058519 NA NA chr4:153455198,chr4:153455210 chr3:174776300,chr3:174776309 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 3 5 6 78 22 ENST00000281708.10 unknown upstream downstream mismatches(2) CCGGAGTCTCCCAAACCTGACTGTCCCGGGAGAAGTGGCCCTGGACGGGCAGAAGCCGCAGCCTGAAAAGACCCAGGAAGAGGAAAAGAGGAG___TACCGCGCCGGAGCCTTCCGCAGCTGCCGCTTCAGTCCGAAGGAGGAAGGGAACCAACCCACTTTCTCGGCGCCGCGGCTCTTTTCTAAAAGT|CACTGCTGGGTGAGGATCTCCCTGACCCACCTTGTCTTGGCAAGTGGCACCCATACGTGGGGGCTCGAATCCAGGTTGAAGGGTCACCGGAGAGATGGTTGGAGAATGTGGAAAACTAAGCTGTAGGACACCTGAGTACTCTTAAAGCAATTCCCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila) 1 Yes colorectal, endometrial, T-ALL epithelial, leukaemia_lymphoma TSG missense, nonsense, large_deletion, frameshift FALSE NA NA NA NA NA NA NA NA NA 23442 HMBOX1::ENSG00000253642 ENSG00000147421.18::ENSG00000253642.6 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2183 FALSE NA FALSE NA HMBOX1 ENSG00000147421.18 protein_coding + + chr8:28890395-29064764:+ chr8:28890678:+ chr8:28747912-28922281:+ chr8:28748195:+ ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:33796294:+ chr8:33462374-33896622:+ chr8:33653812:+ chr8:28915565,chr8:28915566 chr8:33785509,chr8:33785506 NA NA chr8:28773082,chr8:28773083 chr8:33643027,chr8:33643024 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 4 8 2 51 56 ENST00000287701.15 ENST00000523063.5 downstream upstream mismatches(1) CCAGACAAAGACAGTCAGTCTGATGTGATTGAGACAAGGGAGGTTTTTCAGGGGGAGACTGGGAGATAGGGGCCTCCCCTCCCCCTTCTCCTCTTCCTGCGCCGGCCTCAACCCCTCCCCAGTCCCCTCCCGACGGGCGCCCCACGCGGAAGACACCCCTCCCCCTCCCGCCTTCCCTCCTCCCTATCTCAGCCCTTCGTACTGGGACGTTGGGGAGGGGGCTGTGCCGGGCGGAGAGAACTCAGCGAGGATTCTGAG|GCCCTCTGTGCATGCCATGCTTAATAAGGTAATAAAAAGGTAAGATTATAAAGAAGGAAGAGGCCTATCAAGGAAAGAAGGCTCTTTATTTGCTTTGCTGTCATGGTATCCTTCCCATTCCACTGGCTTCCAGCACATATGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23446 ARAP2::NWD2 ENSG00000047365.13::ENSG00000174145.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARAP2 ENSG00000047365.13 protein_coding - - chr4:35948221-36244514:- chr4:36073689:- chr4:35949843-36246136:- chr4:36075311:- NWD2 ENSG00000174145.8 protein_coding + - chr4:37244743-37449463:+ chr4:37374343:- chr4:37246365-37451085:+ chr4:37375965:- chr4:36072712,chr4:36072716 chr4:37384095,chr4:37384096 NA NA chr4:36074334,chr4:36074338 chr4:37385717,chr4:37385718 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PH_domain(100%),Putative_GTPase_activating_protein_for_Arf(100%),Ras_association_(RalGDS/AF-6)_domain(100%),RhoGAP_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%)| ArfGap(100%),PH(100%),RA(100%),RhoGAP(100%),SAM_1(100%),SAM_2(100%)| 5 2 4 55 6 ENST00000303965.9 unknown upstream downstream mismatches(3) ATGATATATGGCCACCAGCTGGAAAGGAACGAAAACGTTCAATAACCAAAAATCCCAAAATTGGAGGTTTGCCTCTGATTCCTATACAGCATGAGGGGAATGCAACCTTGGCCCGGAAAAATATTGAG|GCTGTACAACAAGCATGGCATCAGCATCTGCTTCTGGTCAGGACCTCAGGAAGCTTTTACTCATGGTGGAAGACAAAAGGGGAGCAG?TGTG?C?TCACATGGAGACAGAGGGAGCAACAGAGGAG...GAAA?CCCCAAGCCATTCATGAGGGATCTGCTCCCCT?ACCCAAACACTTCCC DIWPPAGKERKRSITKNPKIGGLPLIPIQHEGNATLARKNIE|avqqawhqhlllvrtsgsfyswwktkgeq???hmetegate NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23447 EYA1::ENSG00000253853 ENSG00000104313.20::ENSG00000253853.3 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EYA1 ENSG00000104313.20 protein_coding - - chr8:71197433-71592025:- chr8:71244603:- chr8:72109668-72504260:- chr8:72156838:- ENSG00000253853 ENSG00000253853.3 lncRNA + + chr8:2726956-2838823:+ chr8:2804586:+ chr8:2584496-2696345:+ chr8:2662104:+ chr8:71244492,chr8:71244497 chr8:2800781,chr8:2800776 NA NA chr8:72156727,chr8:72156732 chr8:2658299,chr8:2658294 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 5 4 2 25 38 ENST00000645793.1 ENST00000654515.1 upstream upstream duplicates(1),mismappers(1) CTGATCTTGAG___AGAGTGTTCATCTGGGACTTGGATGAGACAATCATTGTTTTCCACTCCTTGCTTACTGGGTCCTACGCCAACAGATATGGGAGG___GATCCACCCACTTCAGTTTCCCTTGGACTGCGAATGGAAGAAATGATTTTCAACTTGGCAGACACACATTTATTTTTTAATGACTTAGAA|GTTAATATCCAGAGTCACACGTGGAGAGGAAGCATCACAATGAGACCATACAACCATATAATCTGTTCAAGTCCTAGAAGGTGTTGGCAGAGCTGCAGGACTGACCTAGGTCAATGGCTGTGGG DLERVFIWDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGLRMEEMIFNLADTHLFFNDLE|vniqshtwrgsitmrpynhiicssprrcwqscrtdlgqwlw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23448 DIAPH3::ENSG00000230490 ENSG00000139734.19::ENSG00000230490.4 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:60042690:- chr13:60239717-60738062:- chr13:60616824:- ENSG00000230490 ENSG00000230490.4 lncRNA - + chr13:33354863-33676820:- chr13:33425758:+ chr13:33929000-34250957:- chr13:33999895:+ chr13:60020555,chr13:60020564 chr13:33421620,chr13:33421611 NA NA chr13:60594689,chr13:60594698 chr13:33995757,chr13:33995748 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Diaphanous_GTPase-binding_Domain(51%)| Drf_GBD(68%)| 2 4 5 67 7 ENST00000400324.9 unknown upstream upstream none GCGGGAAAAGGACTTCAGTATCAAAAAAGAAATGGTGATGCAGTACATTAATACTGCTTCTAAGACA___GGAAGTCTTAAGAGAAGCCGACAGATCTCACCTCAGGAATTCATTCATGAGCTGAAAATGGGGTCTGCAGATGAGAGACTTGTCACATGCCTGGAGTCTCTCCGAGTGTCTTTGACCAGCAATCCTGTGAG|CAATGACACTACCATGTAAATGGTGGGAAGACTGCGAAGTTTGCTCATAACTTTGTGAAGATCTGTTCACCATCACAGGACATGTTACCAAGGATGATGTCATTCATGGTATTGGGACCACCAGTTTAAGACATCCGAAGTAACCTGCATTTGTAATTACTGAAATTGTTGTTTTTACTGTGTCCAAATATATATATTCTCATTTA REKDFSIKKEMVMQYINTASKTGSLKRSRQISPQEFIHELKMGSADERLVTCLESLRVSLTSNPVs|ndttm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23449 SORBS3::FZD3 ENSG00000120896.14::ENSG00000104290.11 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SORBS3 ENSG00000120896.14 protein_coding + - chr8:22544986-22575788:+ chr8:22561832:- chr8:22402499-22433301:+ chr8:22419345:- FZD3 ENSG00000104290.11 protein_coding + + chr8:28494205-28574267:+ chr8:28555738:+ chr8:28351722-28431784:+ chr8:28413255:+ chr8:22560134 chr8:28552220 NA NA chr8:22417647 chr8:28409737 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none none none 2 8 1 13 76 unknown ENST00000537916.2 upstream upstream none GATGTTGCCGGGCCGGGCCTGTGGGCAGGTCTTTGCTGGGCTCCTAGATGCCTGGGGTCTGCAGAGGAGGTACACGAGGAAAGCATTGAAG|GATAGTGAATGAGAGCCGACAGGTACTCCAGGAACCTGATTTTGCTCAGTCTCTCCTGAGGGATCCAAATACTCCTATCATAAGAAAGTCAAGGGGAACTTCCACTCAAGGAACATCCACCCATGCTTCTTCAACTCAGCTGGCTATGGTGGATGATCAAAGAAGCAAAGCAGGAAGCATCCACAGCAAAGTGAGCAGCTACC...GCTCAATGAACAGTCACGACATAGCAGCATCAGAGATCTCAGTAATAATCCCATGACTCATATCACACATGGCACCAGCATGAATCGGGTTATTGAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23450 PTK2B::ZMAT4 ENSG00000120899.18::ENSG00000165061.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PTK2B ENSG00000120899.18 protein_coding + + chr8:27311482-27459391:+ chr8:27325681:+ chr8:27168999-27316908:+ chr8:27183198:+ ZMAT4 ENSG00000165061.15 protein_coding - + chr8:40530590-40897833:- chr8:40635023:+ chr8:40388109-40755352:- chr8:40492542:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' high none none none 4 4 3 19 11 ENST00000397501.5 unknown downstream upstream none CTCCGGAGCCGTTGCACACCTACCTGCCCGGCCGACTTACCTGTACTTGCCGCCGTCCCGGCTCACCTGGCGGTGCCCGAGGAGTAGTCGCTGGAGTCCGCGCCTCCCTGG|GTGATGAGAGATCTTTTTAAAGGCAAAGACAGCAATTTCCTGGGGATCTATGAGTACACTGTTCAACTACAGTACAG___GTTCTGGCTCTCTCGCTCAAGCTGGAGTGCAATGATGCAATCTCGGCTCACTGCAACTTCTACCTCCCAGGCTCAAACCATCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein-tyrosine kinase 2-beta TK FAK Q14289 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23452 ZFAT::ZMAT4 ENSG00000066827.16::ENSG00000165061.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134512475:- chr8:135490031-135725292:- chr8:135524718:- ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40767730:- chr8:40388109-40755352:- chr8:40625249:- chr8:134512361,chr8:134512365 chr8:40798522,chr8:40798523 NA NA chr8:135524604,chr8:135524608 chr8:40656041,chr8:40656042 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(100%)|Zinc-finger_double-stranded_RNA-binding(100%),Zinc-finger_of_C2H2_type(72%) AT_hook(100%),zf-C2H2(100%),zf-H2C2_5(100%),zf-met(100%)|zf-C2H2_jaz(0%),zf-met(0%) 5 2 1 61 8 ENST00000377838.8 ENST00000315769.11 upstream downstream none TGCTCATCCAGCAAG___GTGGTTTGAAGTGTCCTGTTTGCAGCTTTGTATATGGCACCAAATGGGAGTTCAATAGGCACTTGAAGAACAAACATGGCTTGAAGGTGGTGGAAATTGATGGAGACCCCAAGTGGGAG___ACAGCAACAGAAGCTCCTGAGGAGCCCTCCACCCAGTATCTCCACATCACAGAGGCCGAAGAAGACGTTCAAGGGACACAGGCAGCGGTGGCCGCGCTCCAGGACCTGAGATACACCTCTGAGAGTG|AGTCGAAAACATGCAAGCAAAGTCCGACTGTATTACATGCTTCACCCCAGGGATGGAGGGTGTCCTGCCAAGAGGCTCCGGTCAGAAAATG...___GGAAGTGATGCCGACATGGTGGATAAGAACAAGTGCTGCACACTCTGCAACATGTCATTCACTTCAGC LIQQGGLKCPVCSFVYGTKWEFNRHLKNKHGLKVVEIDGDPKWETATEAPEEPSTQYLHITEAEEDVQGTQAAVAALQDLRYTSES|esktckqsptvlhaspqgwrvscqeapvrk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23456 TBC1D32::ENSG00000271860 ENSG00000146350.14::ENSG00000271860.9 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TBC1D32 ENSG00000146350.14 protein_coding - - chr6:121079494-121334745:- chr6:121292053:- chr6:121400640-121655891:- chr6:121613199:- ENSG00000271860 ENSG00000271860.9 lncRNA + - chr6:97283303-98400869:+ chr6:97559466:- chr6:97731179-98848745:+ chr6:98007342:- chr6:121287311 chr6:97562472 NA NA chr6:121608457 chr6:98010348 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Broad-minded_protein(34%)| BROMI(16%)| 1 0 6 38 0 ENST00000275159.11 unknown upstream downstream none TGTGTTCAGTACTTTGAAATGTGTAAGACTAGGAAAGCTGATGAAACTTTGGGACATTCAAAGCATTGCA___GAA?CAAGCAGAAAACTTTCTACTACTTAGGACAAGAATTACAATATATTTATTTCATTCACTCACTGTGCCTTTTAGGAAGATTATTGATCTATAAACAAGGCAGAAAACTATTTCCTATTAAGCTGAAGAATAAAAAAG|TCTCACAGGATGTTGGCCAAC...GAGAGCTTCGGTTTTTGCCAGTTGTCAACAAGAGGCTACCCTCAGAGGTCACCTGCAATCCCTTGCCAAGTGGGGTTTCTCAACATGGGTGCTTACTTCTT CVQYFEMCKTRKADETLGHSKHCR?KQKTFYYLGQELQYIYFIHSLCLLGRLLIYKQGRKLFPIKLKNKK|vsqdvgq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23460 NKAIN3::LINC00589 ENSG00000185942.13::ENSG00000251191.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3990 TRUE 1505 NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62249127:+ chr8:63161150-63926559:+ chr8:63161686:+ LINC00589 ENSG00000251191.8 lncRNA - + chr8:29673922-29748109:- chr8:29733007:+ chr8:29531438-29605625:- chr8:29590523:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Na_K-Atpase_Interacting_protein(8%)| NKAIN(0%)| 2 2 3 70 21 ENST00000674864.1 unknown downstream upstream none GCCCTGGAGCCGCGAGCGGCGGCCGCGGGGCCGAGGAGCCTGGGCCGGGCCGGGCGGGGACTACTCCGGAGTCAGGAGGCAGCAGCGGCGGAGGACGAGGATCTCTGGCAGTCAGCGCCGCTCGGACGCCGCCGGCACCATGGGCTGCTGCACCGGACGCTGCTCGCTCATCTGCCTCTGCGCGCTGCAGTTG|ATTTGGAAGCAAAGCATCGTGATGTCCTAGCCAAGACCAGACACTGAAGCAGGAGAGGACATTCCCTTAGAT___GGAGAAGAAGTGAGTGTATTGAGACACTCTGGAGATAACCTGGATCAATCACTTCATTTTAGAGATAAGGACCTGAAAGGAAAAGGAAACCTGCCCCAGGTCGCACAGCT MGCCTGRCSLICLCALQL|iwkqsivms* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23461 NKAIN3::LINC00589 ENSG00000185942.13::ENSG00000251191.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 3990 TRUE 1505 NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62579676:+ chr8:63161150-63926559:+ chr8:63492235:+ LINC00589 ENSG00000251191.8 lncRNA - - chr8:29673922-29748109:- chr8:29726423:- chr8:29531438-29605625:- chr8:29583939:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Na_K-Atpase_Interacting_protein(31%)| NKAIN(44%)| 2 1 2 24 320 ENST00000674864.1 ENST00000506121.3 downstream downstream mismatches(1) AGTGAACAGAAATTCAATTTCTACTGTGACAAAAAG___GTCTCAGCATTAGAGAGGCAGATCTTTGACTTCCTTGGTTTCCAGTGGGCGCCTATTCTTGGAAATTTTCTACACATAATAGTTGTCATATTGGGTTTGTTTGGGACCATTCAGTACAGACCTCGATACATAATGGTG|CTCTGCCCAAATTTCAGCTGTCACAGAATGAGTGATCCTCATAGTATAATGGAAATGCATCATCTCAGTTTCCCCATGGCCTGAATGTCCATACAAAATGAGAGCCAGTAGAG...AACAGAGGACGTGAGGAGTTTTTAAAAATTGAGGAAAAGTGGAAGGAAAAGTAAGGATGAAGGTGAAGATGAAGGAATATGTCAGAGATGCTAGCACTGGCcTCCCCCACCACACAGTACCATGTACTGCTAAAGAACTCTAGAACATACAG___GGTGTAGAC seqkfnfycdkkVSALERQIFDFLGFQWAPILGNFLHIIVVILGLFGTIQYRPRYIMV|lcpnfschrmsdphsimemhhlsfpma* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23466 LINC02055::XKR6 ENSG00000254101.8::ENSG00000171044.11 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02055 ENSG00000254101.8 lncRNA + + chr8:135859369-137092183:+ chr8:136382918:+ chr8:136871612-138104426:+ chr8:137395161:+ XKR6 ENSG00000171044.11 protein_coding - - chr8:10896045-11201833:- chr8:10924830:- chr8:10753555-11059342:- chr8:10782340:- chr8:136408263,chr8:136408258,chr8:136408264 chr8:10974848,chr8:10974853,chr8:10974807 NA NA chr8:137420506,chr8:137420501,chr8:137420507 chr8:10832358,chr8:10832363,chr8:10832317 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |XK-related_protein(66%) |XK-related(8%) 1 3 1 24 31 ENST00000650445.2 ENST00000416569.3 downstream downstream duplicates(1),mismatches(1) CAGTCTCTTCTGAGGTGTAAGAACACAGCACTCTTCCCCTCTGAAGGATGTAGCAACGACATGCCATCTTGGACACAGACCCAGCTCTCACCCAACACCAAATCTGCTTGTGCCTTGATCTTGGACTTACAACCTCCAGAACT|GTATATCCGCACCATGTACCTGGGGATTCAGAGCCAGCGGCGGAAGGAACACCAGCG...CCTGGAGACCTTCCTGGAGAGCGCGCCCCAACTGGTGCTACAGCTCTACATCATGCTCCAGAAGAACAGCGCCGAGACCCTGCCCT___GTGTCTCCTCTGTGACTTCCCTGATGTCCCTGGCTTGGGTGCTAGCCTCCTATCACAAGCTGCTGCGGGACTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23468 ENSG00000253553::LINC02055 ENSG00000253553.9::ENSG00000254101.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000253553 ENSG00000253553.9 lncRNA + + chr8:88326836-88887573:+ chr8:88329097:+ chr8:89339065-89899802:+ chr8:89341326:+ LINC02055 ENSG00000254101.8 lncRNA + - chr8:135859369-137092183:+ chr8:136675321:- chr8:136871612-138104426:+ chr8:137687564:- chr8:88379835,chr8:88379836 chr8:136719165,chr8:136719164 NA NA chr8:89392064,chr8:89392065 chr8:137731408,chr8:137731407 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' high none none none 2 1 1 6 7 ENST00000658256.1 unknown downstream downstream none CACAGCCCGACACACACGCACGCGCGCTTCTTAAAGGAGACGGCTCATAAAGGATTCCCCACTACG___CCAGCAGAGGGGAAGAGGAGCCCACGGGAAAGAAAAGCAGGCGAGGTTAAGAATAAAGAGTGTTCCAGGTATGACAGCTACCTCGGTGAGGTGGAAGAGAGAATTGACAAGGCAAATTTCATGGGTGAGTTGGAAAGGCAAGAAGCAGGACTACAAGAGGTCCTATGTG|GTCAATTTCAACTTTCCCTGGAGTCATCAATGAGAAGCCCGCAGTGAGAGACGCCAGCTGAAAGATGCTGATTTACGTGAGGAAGACAGAACTAACTGATTTTCGTATCTTATCTGTGGAAATATTCCAAGC...TTTTCCCCTAGCTCGATTTAGCTTCTGTTATGAATAGCTAAAAGCCATATATGCTATAATCTTCCCTAATTCCTGTGGATCCTACTCTTTAAAACTTAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23469 SCNN1D::ZFAT ENSG00000162572.21::ENSG00000066827.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3991 TRUE 1506 SCNN1D ENSG00000162572.21 protein_coding + + chr1:1280436-1292029:+ chr1:1280666:+ chr1:1215816-1227409:+ chr1:1216046:+ ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134590355:- chr8:135490031-135725292:- chr8:135602598:- chr1:1284281 chr8:134593135 NA NA chr1:1219661 chr8:135605378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |C2H2-type_zinc-finger_domain(47%),Zinc_finger__C2H2_type(65%) |zf-C2H2(56%),zf-H2C2_5(47%),zf-met(42%) 1 1 2 22 34 ENST00000379116.10 ENST00000523243.5 downstream downstream none GGGAATGTCTGGTTACAGTATGGCGTTGTGCAGATGAAGGTCTTATCGCAGATGAAGCCACCAGGTCACAAGCCTCAGAGAGAATCAACTATAAATGCTTCTCATCAGACTCAAGGCCTGAGGTGATGCTGATGCTGTGCCTGAATTCCAGCAGGGAGGAGGCATGAG|GACAAAAGGAGTTATTCTTGTCCTGTTTGTGAAAAGTCTTTTTCAGAGGATCGATTGATAAAGTCACATATCAAGACCAACCATCCTG___AGGTCTCCATGAGCACCATTTCTGAGGTTCTCGGGAGGAGGGTTCAGCTGAAAGGGCTAATTGGAAAGAGAGCCATGAAATGCC Mr|tkgvilvlfvkslfqrid* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23470 SCNN1D::ZFAT ENSG00000162572.21::ENSG00000066827.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3991 TRUE 1506 SCNN1D ENSG00000162572.21 protein_coding + + chr1:1280436-1292029:+ chr1:1282319:+ chr1:1215816-1227409:+ chr1:1217699:+ ZFAT ENSG00000066827.16 protein_coding - - chr8:134477788-134713049:- chr8:134590355:- chr8:135490031-135725292:- chr8:135602598:- chr1:1284281 chr8:134593135 NA NA chr1:1219661 chr8:135605378 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |C2H2-type_zinc-finger_domain(47%),Zinc_finger__C2H2_type(65%) |zf-C2H2(56%),zf-H2C2_5(47%),zf-met(42%) 0 1 2 21 34 ENST00000470022.1 ENST00000523243.5 downstream downstream none GCTTCCTTCCAGAGCCGGCAGGCAG|GACAAAAGGAGTTATTCTTGTCCTGTTTGTGAAAAGTCTTTTTCAGAGGATCGATTGATAAAGTCACATATCAAGACCAACCATCCTG___AGGTCTCCATGAGCACCATTTCTGAGGTTCTCGGGAGGAGGGTTCAGCTGAAAGGGCTAATTGGAAAGAGAGCCATGAAATGCC ASFQSRQA|gqkelflscl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23472 CASC9::ST3GAL1 ENSG00000249395.4::ENSG00000008513.17 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC9 ENSG00000249395.4 lncRNA - - chr8:75120409-75352327:- chr8:75324221:- chr8:76032644-76264562:- chr8:76236456:- ST3GAL1 ENSG00000008513.17 protein_coding - - chr8:133454848-133571926:- chr8:133562678:- chr8:134467091-134584169:- chr8:134574921:- chr8:75310057,chr8:75310059,chr8:75310068 chr8:133566244,chr8:133566246,chr8:133566252 NA NA chr8:76222292,chr8:76222294,chr8:76222303 chr8:134578487,chr8:134578489,chr8:134578495 NA NA sense sense unknown exon/splice-site intron duplication high none |Glycosyltransferase_family_29_(sialyltransferase)(100%) |Glyco_transf_29(100%) 1 0 3 176 18 ENST00000675897.1 unknown upstream downstream multimappers(1) CGTGGGCGTAGGACCCTCTGAACCAG___TGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCGGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCG|TGTGCTGGAGCCCTAACAAGGGCAAAGAACTGCCAGTGGTCAAGAGCTCAAACACCCGGAACAACCCAGCGACATTCACAGACACCAGCAACTACAGCCCTGACCCGAGTTGGCC...TCTTCTGACGGTCCTCCTGATTTTGCAGATAAAGATGTGGATTCAGGCCAGGCCCTGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23473 EXT1::GPAT4-AS1 ENSG00000182197.13::ENSG00000253133.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- GPAT4-AS1 ENSG00000253133.2 lncRNA - + chr8:41509593-41578421:- chr8:41566631:+ chr8:41367112-41435940:- chr8:41424150:+ chr8:118077703,chr8:118077705,chr8:118077705 chr8:41554458,chr8:41554458,chr8:41554456 NA NA chr8:119089942,chr8:119089944,chr8:119089944 chr8:41411977,chr8:41411977,chr8:41411975 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Exostosin_family(73%)| Exostosin(0%)| 1 0 3 220 5 ENST00000378204.7 unknown upstream upstream none TCCCAGGACAGGAGGGGAGAGGGGGTTTTTGAAGTTCAACACCATCCCTCCTCTCAGGAAGTACATGCTGGTATTCAAGGGGAAGAGGTACCTGACAGGGATAGGATCAGACACCAGGAATGCCTTATATCACGTCCATAACGGGGAGGACGTTGTGCTCCTCACCACCTGCAAGCATGGCAAAGACTGGCAAAAGCACAAGGATTCTCGCTGTGACAGAGACAACACCGAGTATGAGAA|AGACGGGATCTCACCATCTTGCCCAGGCTGGTCTCCTAACTCCTGGGCTCAAGCGAGCCTCCCACCTTGGCCTCCCGAGTAGCTGGGACCTACTGAGTCAcACTTGTAGTCACATCCTTTTCCTTTCTCCAACCCACTGGTTAATCATG PRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEk|dgispscpgwspnswaqaslppwppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 23474 HAS2-AS1::GDAP1 ENSG00000248690.8::ENSG00000104381.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3992 TRUE 1507 HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888977:+ chr8:122651533-123006424:+ chr8:122901216:+ GDAP1 ENSG00000104381.14 protein_coding + + chr8:74320613-74518007:+ chr8:74492052:+ chr8:75232848-75430242:+ chr8:75404287:+ chr8:121993326,chr8:121993325 chr8:74395646,chr8:74395642 NA NA chr8:123005565,chr8:123005564 chr8:75307881,chr8:75307877 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 1 1 2 102 6 ENST00000664717.1 ENST00000674710.1 downstream upstream mismatches(1) GCTGTCTTCGTGGAATGAGTTAGGAAAGAGTCCCTCCTCGTCAACTGTTGGGAATACATTCAGCAGGGTTGGTATCATTGCATGTCTGGCAGAATTTGACTAGGAATCCATCTGGTCCAGGATTTTTTTTGTTG|GGAGAAGAGAACTAACATGATGGTCAGTCTGGAGGCTCAAGTGAGGAAGTAGCCACACTCCAGACTCTGAAGCAGAAC...CCCTTCTCCATCACTGGGTTAAAGAGAGAGGAATGAAAACCATTTTTCCCCCAGAAGTTTGGGTTTCTTTTCAGCATTCTAATTACCTTATTCATTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23475 HAS2-AS1::GDAP1 ENSG00000248690.8::ENSG00000104381.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3992 TRUE 1507 HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888977:+ chr8:122651533-123006424:+ chr8:122901216:+ GDAP1 ENSG00000104381.14 protein_coding + + chr8:74320613-74518007:+ chr8:74500513:+ chr8:75232848-75430242:+ chr8:75412748:+ chr8:121993326,chr8:121993325 chr8:74395646,chr8:74395642 NA NA chr8:123005565,chr8:123005564 chr8:75307881,chr8:75307877 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 0 1 2 102 30 ENST00000664717.1 ENST00000674946.1 downstream upstream none GCTGTCTTCGTGGAATGAGTTAGGAAAGAGTCCCTCCTCGTCAACTGTTGGGAATACATTCAGCAGGGTTGGTATCATTGCATGTCTGGCAGAATTTGACTAGGAATCCATCTGGTCCAGGATTTTTTTTGTTG|AAACTGAATGAATCCCGCCGGTGACTGCAGACTACGATAAGCTCAACCACATTAAAGTCCTGATCCCAGTCTTCAAACCAGATAT___TTCCCGAGAGATCCCATGATCCAGAGACAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23476 HAS2-AS1::GDAP1 ENSG00000248690.8::ENSG00000104381.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3992 TRUE 1507 HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121891754:+ chr8:122651533-123006424:+ chr8:122903993:+ GDAP1 ENSG00000104381.14 protein_coding + + chr8:74320613-74518007:+ chr8:74500513:+ chr8:75232848-75430242:+ chr8:75412748:+ chr8:121993326,chr8:121993325 chr8:74395646,chr8:74395642 NA NA chr8:123005565,chr8:123005564 chr8:75307881,chr8:75307877 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 1 0 2 70 30 ENST00000665664.1 ENST00000674946.1 downstream upstream none AGCAGGGTTGGTATCATTGCATGTCTGGCAGAATTTGACTAGGAATCCATCTGGTCCAGGATTTTTTTTGTTG___ACACTGCTCAAGGAAAGAGATGAATAATG|AAACTGAAgGAATCCCGCCGGTGACTGCAGACTACGATAAGCTCAACCACATTAAAGTCCTGATCCCAGTCTTCAAACCAGATAT___TTCCCGAGAGATCCCATGATCCAGAGACAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23477 HAS2-AS1::GDAP1 ENSG00000248690.8::ENSG00000104381.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3992 TRUE 1507 HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121891754:+ chr8:122651533-123006424:+ chr8:122903993:+ GDAP1 ENSG00000104381.14 protein_coding + + chr8:74320613-74518007:+ chr8:74438624:+ chr8:75232848-75430242:+ chr8:75350859:+ chr8:121993326,chr8:121993325 chr8:74395646,chr8:74395642 NA NA chr8:123005565,chr8:123005564 chr8:75307881,chr8:75307877 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none none none 0 0 0 70 4 ENST00000665664.1 ENST00000675999.1 downstream upstream mismatches(1) CAGACACTGCTCAAGGAAAGAGATGAATAATG|AGATGGGATCTCTGTCACCTTGGTTGGAGTGCAGTGGCATGATCATgGTTTGCTGCgGTCTTGACCTCC...GGCTGgGACTgCAGGTGCATACCATCACgCCTGGCTAATTATTGTTATTTTTGTAGgGATGGAGATCTTGCTATGTTGCCCAGGCTgGTCTTGAATTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23488 ST3GAL1::ENSG00000283674 ENSG00000008513.17::ENSG00000283674.3 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3996 TRUE 1508 ST3GAL1 ENSG00000008513.17 protein_coding - - chr8:133454848-133571926:- chr8:133545774:- chr8:134467091-134584169:- chr8:134558017:- ENSG00000283674 ENSG00000283674.3 lncRNA - - chr8:12467693-12665588:- chr8:12518955:- chr8:12325202-12523097:- chr8:12376464:- chr8:133537252,chr8:133537256 chr8:12579505,chr8:12579506 NA NA chr8:134549495,chr8:134549499 chr8:12437014,chr8:12437015 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion high none none none 0 1 2 23 19 ENST00000521180.5 ENST00000641618.1 upstream downstream none GAGGAAATTAACACCCCCAAGAGCTGCAGTGAGCAAATGCATTGAGCTTGGGTCAGGACAATTCCATTTGGGGACCAGAGATGGACGGTCACTCAGCCTATGGAG|ATCCTTCTTAGAAATTCCTAAGGCTCAATGCTTTGTGGAAGATTCTGAGAAAGAAAATAGTTTCCGATCTTTGGGATTCCCGAGATGGTCCAATCTGCAAAAAG...GAATCCCAGTCTGGAACCACCACAGCTGTGTAAAACCTGCAGCGCCGGAAACCTGGGAGGCAAGACCAAGCCCAGACAACCCTTGCAGAGTGACCCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23489 ST3GAL1::ENSG00000283674 ENSG00000008513.17::ENSG00000283674.3 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3996 TRUE 1508 ST3GAL1 ENSG00000008513.17 protein_coding - - chr8:133454848-133571926:- chr8:133539637:- chr8:134467091-134584169:- chr8:134551880:- ENSG00000283674 ENSG00000283674.3 lncRNA - - chr8:12467693-12665588:- chr8:12538053:- chr8:12325202-12523097:- chr8:12395562:- chr8:133537252,chr8:133537256 chr8:12579505,chr8:12579506 NA NA chr8:134549495,chr8:134549499 chr8:12437014,chr8:12437015 NA NA sense sense unknown 5'UTR/splice-site exon deletion high none none none 1 0 2 5 18 ENST00000648219.1 ENST00000635775.1 upstream downstream none CTCAGGCTGGTCTGGAACTACTGGGCTCAAGCAATTCCCCAGCCTCAGCCTCCTAAAGCGTTGGGATTTCAG|GCACTGTGCTGTGTTGCGGGAAGTCAGGGACCCCAAATGGAGGGACCAGCTGAAGCCATGACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23490 ST3GAL1::ENSG00000283674 ENSG00000008513.17::ENSG00000283674.3 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 3996 TRUE 1508 ST3GAL1 ENSG00000008513.17 protein_coding - - chr8:133454848-133571926:- chr8:133545774:- chr8:134467091-134584169:- chr8:134558017:- ENSG00000283674 ENSG00000283674.3 lncRNA - - chr8:12467693-12665588:- chr8:12487908:- chr8:12325202-12523097:- chr8:12345417:- chr8:133537252,chr8:133537256 chr8:12579505,chr8:12579506 NA NA chr8:134549495,chr8:134549499 chr8:12437014,chr8:12437015 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion medium none none none 1 0 1 23 32 ENST00000521180.5 ENST00000660816.1 upstream downstream mismatches(1) TCcGTTGGTACCATTTTCAGATTTCATCTTCCTAAACTGGAAATGTCAATGAGAGGAAATTAACACCCCCAAGAGCTGCAGTGAGCAAATGCATTGAGCTTGGGTCAGGACAATTCCATTTGGGGACCAGAGATGGACGGTCACTCAGCCTATGGAG|GTGATCGAGTGTGGATCAAGGACTGGAAAGTAGCCTCTTTGTGTCCACTGTGGAAAGGACCCCAGACTGTCGTCCTGAGCACTCCCACCGCTGTGAAGGTAGAAGGAATCCCAGTCTGGAACCACCACAGCTGTGTAAAACCTGCAGCGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23491 LRRC38::POP1 ENSG00000162494.6::ENSG00000104356.11 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LRRC38 ENSG00000162494.6 protein_coding - - chr1:13474973-13514003:- chr1:13512963:- chr1:13801441-13840498:- chr1:13839458:- POP1 ENSG00000104356.11 protein_coding + + chr8:98117293-98159835:+ chr8:98156050:+ chr8:99129521-99172063:+ chr8:99168278:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Leucine_rich_repeat(100%)|POPLD_(NUC188)_domain(24%) LRR_1(100%),LRR_5(100%),LRR_8(100%)|POPLD(0%) 0 1 2 11 175 ENST00000376085.4 ENST00000401707.7 upstream upstream none AACGACAACAACCTGCGCAGCCTCAGCGTGGCCGCCCTGGCCGCGCTGCCCGCGCTGCGCTCCCTGCGTCTGGACGGGAACCCCTGGCTGTGCGACTGTGACTTCGCCCACCTCTTCTCCTGGATCCAGGAGAACGCATCCAAACTGCCCAAAG|ACGCCCTCCTGCAAAACGGCCCAACTACGTTAAGCTTGGCACTCTGGCACCTTTCTGCTGTCCCTGGGAGCAGTTAACTCAAGACTGGGAGTCAAGAGTCCAGGCTTACGAAGAACCTTCTGTAGCTTCATCTCCAAATGGTAAGGAGAGTGACCTAAGAAGATCTGAGGTGCCTTGTGCTCCCATGCCTAAAAAAACTCATCAGCCATCTGATGAAGTGGGCACATCCATAGAGCACCCCAGGGAGGCAGAGGAGGTAATGG NDNNLRSLSVAALAALPALRSLRLDGNPWLCDCDFAHLFSWIQENASKLPK|dallqngpttlslalwhlsavpgss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23527 ENSG00000287289::VPS13B ENSG00000287289.1::ENSG00000132549.20 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000287289 ENSG00000287289.1 lncRNA + + chr8:107160354-107166595:+ chr8:107160438:+ chr8:108172582-108178823:+ chr8:108172666:+ VPS13B ENSG00000132549.20 protein_coding + - chr8:99013266-99877580:+ chr8:99164203:- chr8:100025494-100889808:+ chr8:100176431:- chr8:107165713,chr8:107165714 chr8:99188257,chr8:99188256 NA NA chr8:108177941,chr8:108177942 chr8:100200485,chr8:100200484 NA NA sense antisense unknown exon intron inversion/3'-3' medium none none none 1 2 0 16 29 ENST00000670718.1 unknown downstream downstream none ATCTATTCTCACCAGCACATTACATCAATACAGCTTAACTGAAGGTCACTGAACTCCTGAACCAACCAACAAG|AATCGAGACCATCAAGCAACAGATGGTCTTACAAATGGAACCCCAAATGAGTTCAACTAACAACTTCTACCCGGGACCCCTGGACCGACCCACTGGCACTTCCCCTGGCCTGGAGAGTTCCCC...TTGAGAGGTGACAGCATGCTGGCAGTCCTCAGAGCCCTCGCTTGCTCTCAGCACCTCCCCTGCCTGGGCTCCCACTTTGGTTGCATTTGAGGAGCCCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23531 BNIP3L::PPP1R3B-DT ENSG00000104765.16::ENSG00000248538.10 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4001 TRUE 1509 BNIP3L ENSG00000104765.16 protein_coding + + chr8:26383054-26505636:+ chr8:26408376:+ chr8:26240570-26363152:+ chr8:26265892:+ PPP1R3B-DT ENSG00000248538.10 lncRNA + + chr8:9151695-9425524:+ chr8:9389714:+ chr8:9009205-9283034:+ chr8:9247224:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon duplication medium none BNIP3(92%)| BNIP3(20%)| 0 1 2 682 1 ENST00000523949.5 ENST00000648214.1 downstream upstream none GGAAAAGTGGAGCCATGAAGAAAGGGGGTATTTTCTCCGCAGAATTTCTGAAGGTGTTCATTCCATCTCTCTTCCTTTCTCATGTTTTGGCTTTGGGGCTAGG|GGTTTCACCGTGTTgGCCgGGATGGatTCCATCTTCTGACCTCGTGATCCGCCTGCCTCGG...AGAACTaGAACCCAGAGGCTGTTTCTGTGTAGGCAAAGAGAATTTTTTTTTTTTGAGCTGAGCAGCTGTTCAATCTGCATTTGAATCTGCTCTACTCCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23532 BNIP3L::PPP1R3B-DT ENSG00000104765.16::ENSG00000248538.10 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4001 TRUE 1509 BNIP3L ENSG00000104765.16 protein_coding + + chr8:26383054-26505636:+ chr8:26408376:+ chr8:26240570-26363152:+ chr8:26265892:+ PPP1R3B-DT ENSG00000248538.10 lncRNA + + chr8:9151695-9425524:+ chr8:9389705:+ chr8:9009205-9283034:+ chr8:9247215:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site duplication low none BNIP3(92%)| BNIP3(20%)| 0 0 0 682 1 ENST00000523949.5 ENST00000702487.1 downstream upstream mismatches(1) GAAGTCGAGGCTTTGAAGAAAAGTGCGGACTGGGTATCAGACTGGTCCAGTAGACCCGAAAACATTCCACCCAA___GGAGTTCCACTTCAGACACCCTAAACG...ATCTCTCTTCCTTTCTCATGTTTTGGCTTTGGGGCTAGG|TgGAGACAGGGTTTCACCGTGTTgGCCAGGATGGTCTCCATCTTCTGACCTCGTGATCCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23561 POP1::NIPAL2 ENSG00000104356.11::ENSG00000104361.10 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POP1 ENSG00000104356.11 protein_coding + + chr8:98117293-98159835:+ chr8:98156412:+ chr8:99129521-99172063:+ chr8:99168640:+ NIPAL2 ENSG00000104361.10 protein_coding - + chr8:98189826-98294393:- chr8:98249256:+ chr8:99202054-99306621:- chr8:99261484:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none POPLD_(NUC188)_domain(100%),Ribonucleases_P/MRP_protein_subunit_POP1(100%)| POP1(100%),POPLD(100%)| 1 1 1 234 21 ENST00000401707.7 unknown downstream upstream mismatches(1) GAAGAACCTTCTGTAGCTTCATCTCCAAATGGTAAGGAGAGTGACCTAAGAAGATCTGAGGTGCCTTGTGCTCCCATGCCTAAAAAAACTCATCAGCCATC...TGGATGCAGGGTGTCAAGAATCGGCAGGGCCTGAGAGGATCACAGACCAGGAGGCCAGTGAAAACCATGTTGCTGCCACAGGGAGTCACCTCTGCGTTCTCAG|AACACCTATGAATCTACCTGTAAAACTAATGTTGGACAAATGCTGCCTGAAGCTGAGCACGTCAGTGAGGAACAGCAGGACACACAGAGAGAGGGAAAGAAAGCACAGAAGAAAGATGCTTCAAGAAAGGAAAAC...GGAAAGGAAAAAgGGAGCaCAATGTGTTGGTGTGAACCAGACTGTCTAAGGAGAGGGAGGAAGATGAAAGACTTAAGGGACTTAACACACTTGGACTTAAGGACTAAAACTATT DAGCQESAGPERITDQEASENHVAATGSHLCVLr|tpmnlpvklmldkcclklstsvrnsrthrererkhrrkmlqerk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23566 ATP6V1H::PCAT1 ENSG00000047249.18::ENSG00000253438.5 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1H ENSG00000047249.18 protein_coding - - chr8:53715543-53843558:- chr8:53795647:- chr8:54628103-54756118:- chr8:54708207:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:53781736,chr8:53781738 chr8:127181699,chr8:127181697 NA NA chr8:54694296,chr8:54694298 chr8:128193944,chr8:128193942 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none V-ATPase_subunit_H(61%)| V-ATPase_H_N(66%)| 0 1 1 177 9 ENST00000355221.7 ENST00000642795.1 upstream upstream none CAGGAGTCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATTTCGT|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGGTGGCTCATGC QESVKEKVTRIILAAFR|tqsaq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23571 NRIP3-DT::FAR1 ENSG00000253973.3::ENSG00000197601.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NRIP3-DT ENSG00000253973.3 lncRNA + + chr11:9004093-9067776:+ chr11:9004543:+ chr11:9025640-9089323:+ chr11:9026090:+ FAR1 ENSG00000197601.14 protein_coding + + chr11:13668668-13732346:+ chr11:13727556:+ chr11:13690215-13753893:+ chr11:13749103:+ chr11:9010025,chr11:9010023 chr11:13726445,chr11:13726440 NA NA chr11:9031572,chr11:9031570 chr11:13747992,chr11:13747987 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Male_sterility_protein(8%) |Sterile(0%) 1 0 1 26 206 ENST00000670061.1 ENST00000354817.8 downstream upstream none TGGCCGACCCGGGGATCACCGACAGCCGGGCCATGCCTCGAGTCCCGCCGCCCGCGCCGCTGCTCGGCTTCTCAGAAACGCACCTCCACGCCGCCAGCCGGGGCTCCAGGGTCCACCGCC...CCCTCCGAGGTTGGGAGCGCTCCGGATTTCTCCAACTTCAG|ACCTTCAATATTGATGTACGGCAGTTACATTGGGCAGAATATATAGAGAACTACTGCTTGGGAACTAAGAAGTACtTATTGAATGAAGAAATGTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23573 DPYSL2::SNTG1 ENSG00000092964.18::ENSG00000147481.17 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPYSL2 ENSG00000092964.18 protein_coding + + chr8:26514031-26658178:+ chr8:26514679:+ chr8:26371547-26515694:+ chr8:26372195:+ SNTG1 ENSG00000147481.17 protein_coding + + chr8:49909789-50796692:+ chr8:50530177:+ chr8:50822349-51709252:+ chr8:51442737:+ chr8:26578049,chr8:26578047 chr8:50519384,chr8:50519379 NA NA chr8:26435565,chr8:26435563 chr8:51431944,chr8:51431939 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none |PDZ_domain(5%) |PDZ(39%) 0 1 1 53 2 ENST00000521913.7 ENST00000642720.2 downstream upstream mismatches(1) CCCACTTGGGCCCGGACCCGCAGCCGCCGTACTCGCGGCAGGGCCGGCGCGCCGGCGGAGAGCCATCTGTTGAATCGGGCCGGAAGGTGGAGATCCGGAGGGCCTCGGGCAAAGAAGCCCTGCAGAACATCAACGACCAG|GTGCTCCAAGTGACCAGAGCAGTGGCACCTCCTCTCCTCTCTGTGACAGaGGCTTACATCTCAACTACCATCCCAACAATACA___GACACATTATCATGCTCGTCGTGGCCGACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCTCAGACTGATCCCTCTACTTCATTCGCGCTTCTCTCAGTATGTGCCCGGCACAGATTTGAGTCG___GCAGAATGCCTTTCAAGTCATTGCTGTGG...ATCTTCTTCCAGCGTTAAtAAGaGAAAGTGGAAAtTATACAtCTTTGGAGTGtACAAACCTAACAAACGCTACTGCAGCTGGGTGGTTAACGTCAACTGTG HLGPDPQPPYSRQGRRAGGEPSVESGRKVEIRRASGKEALQNINDQ|vlqvtravappllsvteayisttiptiqthyharrgrrlqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23582 RARA::LINC00589 ENSG00000131759.18::ENSG00000251191.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40331396:+ chr17:38465432-38513895:+ chr17:38487648:+ LINC00589 ENSG00000251191.8 lncRNA - - chr8:29673922-29748109:- chr8:29726423:- chr8:29531438-29605625:- chr8:29583939:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 1 0 1 110 320 ENST00000254066.10 ENST00000518623.5 downstream downstream none GGGGCGGGCACCTCAATGGGTACCCGGTGCCTCCCTACGCCTTCTTCTTCCCCCCTATGCTGGGTGGACTCTCCCCGCCAGGCGCTCTGACCACTCTCCAGCACCAGCTTCCAGTTAGTGGATATAGCACcCCATCCCCAGCCA|CTCTGCCCAAATTTCAGCTGTCACAGAATGAGTGATCCTCATAGTATAATGGAAATGCATCATCTCAGTTTCCCCATGGCCTGAATGTCCATACAAAATGAGAGCCAGTAGAGAAAAACAGAG GGHLNGYPVPPYAFFFPPMLGGLSPPGALTTLQHQLPVSGYSTPSPA|tlpkfqlsqne* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23590 LINC00824::ENSG00000254242 ENSG00000254275.6::ENSG00000254242.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4007 TRUE 1510 LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128561070:- chr8:129417515-129576925:- chr8:129573316:- ENSG00000254242 ENSG00000254242.2 lncRNA + + chr8:19091703-19145449:+ chr8:19136678:+ chr8:18949213-19002959:+ chr8:18994188:+ chr8:128441546,chr8:128441549 chr8:19105343,chr8:19105340 NA NA chr8:129453792,chr8:129453795 chr8:18962853,chr8:18962850 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 20 2 ENST00000520766.5 ENST00000660401.1 upstream upstream none CCTGGAGGTGGCAGAGCTGAAGAG|GTACAACTGGTCAGGGAGAACCAATGGCAGACATGTGCTATATCCCAACACACCTTGACTCTTGCTCTCACtGGAAG...AACGACCTGACTTCAACCAGGAAGACAAGGTTGATGACCTAAGGAATAGCAtTGTAGCAAATGGAAGGATCCCTGAGTGACTGTGTGGAGCAGAGCCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23591 LINC00824::ENSG00000254242 ENSG00000254275.6::ENSG00000254242.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4007 TRUE 1510 LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128561070:- chr8:129417515-129576925:- chr8:129573316:- ENSG00000254242 ENSG00000254242.2 lncRNA + + chr8:19091703-19145449:+ chr8:19142586:+ chr8:18949213-19002959:+ chr8:19000096:+ chr8:128441546,chr8:128441549 chr8:19105343,chr8:19105340 NA NA chr8:129453792,chr8:129453795 chr8:18962853,chr8:18962850 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 20 13 ENST00000520766.5 ENST00000660401.1 upstream upstream none CAGAAACCAAGAAGATGGTAAGGCCTGGAGGTGGCAGAGCTGAAGAG|CTGGTATGTGGCAACGACCTGACTTCAACCAGGAAGACAAGGTTGATGACCTAAGGAATAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23592 BAALC-AS1::ZC2HC1A ENSG00000247081.8::ENSG00000104427.13 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BAALC-AS1 ENSG00000247081.8 lncRNA - - chr8:103153394-103298772:- chr8:103285838:- chr8:104165622-104311000:- chr8:104298066:- ZC2HC1A ENSG00000104427.13 protein_coding + + chr8:78666050-78719765:+ chr8:78686467:+ chr8:79578285-79632000:+ chr8:79598702:+ chr8:103250048,chr8:103250055 chr8:78678816,chr8:78678809 NA NA chr8:104262276,chr8:104262283 chr8:79591051,chr8:79591044 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none |zinc-finger_of_a_C2HC-type(47%) |zf-C2HC_2(2%) 1 0 0 30 52 ENST00000499522.6 ENST00000519307.2 upstream upstream none AGGGGAGATGGAACCCTGAGCAGCCCATGTACATGGAAGATCTTTATTGCAGAGATCTTCAAACCAG|CCAGAACCACCAAAGAAACCATCTAATTGGAGAAGGAAACATGAAGAATTCATTGCTACCATAAGAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23596 LINC00589::SILC1 ENSG00000251191.8::ENSG00000232044.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LINC00589 ENSG00000251191.8 lncRNA - - chr8:29673922-29748109:- chr8:29724877:- chr8:29531438-29605625:- chr8:29582393:- SILC1 ENSG00000232044.8 lncRNA + + chr2:5932543-6003510:+ chr2:5968586:+ chr2:6072675-6143642:+ chr2:6108718:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 1 0 0 327 2 ENST00000506121.3 ENST00000654655.1 upstream upstream none AGACGGCAGTCTTCTTGGGGAAAAAGAGGCTTCAGGATTGCAAGATTTCAGCTACTGTCTCTCCTCGGAGCAGGATTCCATCTTTTCCATGGCTGGGGaCC...CACTGTGCACTGCTCTTCTCGCTGGG|GAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-7158 chr2:5974662-5974732:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23601 ABCA13::C7orf57 ENSG00000179869.15::ENSG00000164746.14 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2189 TRUE 4010 TRUE 1511 ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48193052:+ chr7:48211055-48687093:+ chr7:48232649:+ C7orf57 ENSG00000164746.14 protein_coding + + chr7:48035511-48061304:+ chr7:48052700:+ chr7:48075108-48100901:+ chr7:48092297:+ chr7:48198221,chr7:48198222 chr7:48052162,chr7:48052157 NA NA chr7:48237818,chr7:48237819 chr7:48091759,chr7:48091754 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Family_of_unknown_function_(DUF5524)(31%) |DUF5524(31%) 36 25 72 173 74 ENST00000435803.6 ENST00000430738.5 downstream upstream duplicates(13),low_entropy(2),mismatches(4) AGCAGCAGGCATGGGGCATGCCGGGTGCCAGTTCAAAGCCCTGCTGTGGAAGAATTGGCTCTGCAGACTCAGGAACCCG___GTCCTTTTCCTTGCTGAATTCTTCTGGCCTTGTATCCTGTTTGTAATTCTGACAGTTCTTCGTTTTCAAGAACCTCCCAGATACAGAGACATTT|GCCTGGTCAAAAAAACAGTTCACCTACCAATTTTTCCAAACTCATTAGCAATGGTTATAAGGATGAGTGGTTGCAGCAGCAGCAGCGAGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCATCAGTGTTATCTCAGTCCCCACGAGACCTGGAAGGTCCCCAGGATGCAGCCAGGCTCCAGGAcGCAGAGGCTTCTGAAGGTCCTGAGGACACCCCAG___GCCCAGAAGAATCTGTATCTGCATCAACACCAG MGHAGCQFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRDI|clvkktvhlpifpnslamvirmsgcsssseltqtrgprrppghqcylsphetwkvprmqpgsrtqrllkvlrtpqaqknlylhqh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23602 ABCA13::C7orf57 ENSG00000179869.15::ENSG00000164746.14 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2190 TRUE 4010 TRUE 1511 ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48193052:+ chr7:48211055-48687093:+ chr7:48232649:+ C7orf57 ENSG00000164746.14 protein_coding + + chr7:48035511-48061304:+ chr7:48052748:+ chr7:48075108-48100901:+ chr7:48092345:+ chr7:48198221,chr7:48198222 chr7:48052162,chr7:48052157 NA NA chr7:48237818,chr7:48237819 chr7:48091759,chr7:48091754 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Family_of_unknown_function_(DUF5524)(26%) |DUF5524(31%) 15 6 42 173 137 ENST00000435803.6 ENST00000435376.5 downstream upstream duplicates(4),mismatches(6) AGCAGCAGGCATGGGGCATGCCGGGTGCCAGTTCAAAGCCCTGCTGTGGAAGAATTGGCTCTGCAGACTCAGGAACCCG___GTCCTTTTCCTTGCTGAATTCTTCTGGCCTTGTATCCTGTTTGTAATTCTGACAGTTCTTCGTTTTCAAGAACCTCCCAGATACAGAGACATTT|CAATGGTTATAAGGATGAGTGGTTGCAGCAGCAGCAGCGAGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCATCAGTGTTATCTCAGTCCCCACGAGACCTGGAAGGTCCCCAGGATGCAGCCAGGCTCCAGGAcGCAGAGGCTTCTGAAGGTCCTGAGGACACCCCAG___GCCCAGAAGAATCTGTATCTGCATCAACACCAGCA MGHAGCQFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRDI|smvirmsgcsssseltqtrgprrppghqcylsphetwkvprmqpgsrtqrllkvlrtpqaqknlylhqhq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23604 ZMYND11::CELF2-DT ENSG00000015171.21::ENSG00000270111.4 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMYND11 ENSG00000015171.21 protein_coding + + chr10:130088-254637:+ chr10:247466:+ chr10:176028-300577:+ chr10:293406:+ CELF2-DT ENSG00000270111.4 lncRNA - + chr10:10369809-10462361:- chr10:10412976:+ chr10:10411772-10504324:- chr10:10454939:+ chr10:247665,chr10:247663 chr10:10412108,chr10:10412103 NA NA chr10:293605,chr10:293603 chr10:10454071,chr10:10454066 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Bromodomain(100%),PWWP_domain(100%)| Bromodomain(100%),PWWP(100%)| 20 16 16 209 31 ENST00000704295.1 unknown downstream upstream duplicates(2),mismatches(1) CGAGAAGGGAGATTTTGGAAATCTAAGAATGAGGACCGAGGTGAGGAAGAGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAG___CTAAAGGTCACTCAAGAACCAAGAGCAAAGAAAGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAA|GTCCCAGCAAGTGCAAGAAGATAAGAGAAATAGAAGAGTGGTAAAAGGGGGGAATATAATACATTTTGCAGCCAGACATGGTGACTCACACACCTGTAATTCCAGCACTTTGGGAGGCTGAGGTAGGAGGATCTCTTGAGCCCAGGAATTCCAGACTAGCCTGGACAACACAGGGAGACCGTGTCTCTAACTATACACATAAATACATTAAATGACTTTTCC REGRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKE|vpasarr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23605 DNASE2::MAST1 ENSG00000105612.10::ENSG00000105613.10 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2191 FALSE NA FALSE NA DNASE2 ENSG00000105612.10 protein_coding - - chr19:12875209-12881595:- chr19:12880802:- chr19:12986023-12992409:- chr19:12991616:- MAST1 ENSG00000105613.10 protein_coding + + chr19:12833951-12874952:+ chr19:12873324:+ chr19:12944765-12985766:+ chr19:12984138:+ chr19:12880265,chr19:12880651,chr19:12880655 chr19:12872760,chr19:12872762,chr19:12872758 NA NA chr19:12991079,chr19:12991465,chr19:12991469 chr19:12983574,chr19:12983576,chr19:12983572 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Deoxyribonuclease_II(29%)| DNase_II(9%)| 5 1 5 741 11 ENST00000222219.8 ENST00000251472.9 upstream upstream mismatches(1) CGGGACGGCAGGGCACTCATCAACAGCCCGGAGGGGGCCGTGGGCCGAAGCCTGCAGCCGCTGTACCGGAGCAACACCAGCCAG___CTCGCCTTCCTGCTCTACAATGACCAACCGCCTCAACCCAGCAAGGCTCAGGACTCTTCCATGCGTGGGCACACGAAGG|CAAGAAGCGCAGCTCCCTCTTCCGGAAGATCACGAAGCAGTCGAACCTGCTGCATACTAGCCGCTCGCTGTCGTCGCTGAACCGCTCGCTGTCATCCAGCGATAGTCTCCCGGGCTCGCCTACGCACGGGCTGCCGGCGCGCTCGCCCACGCACAGCTACCGCTCCACGCCTGACTCCGCCTACCTAG___GCGCCTCATCCCAGAGCAGCTCCCCAGCCTCGAGCACGCCCAACTCGCCTGCGTCGTCGGCGTCGCACCACATTCGGC RDGRALINSPEGAVGRSLQPLYRSNTSQLAFLLYNDQPPQPSKAQDSSMRGHTK|arsaapssgrsrssrtccilaarcrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 1 AGC MAST Q9Y2H9 TRUE Ovary,Fallopian_tube no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23607 DYSF::ZNF638 ENSG00000135636.16::ENSG00000075292.19 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2192 TRUE 4011 TRUE 1512 DYSF ENSG00000135636.16 protein_coding + + chr2:71453561-71686763:+ chr2:71520904:+ chr2:71680691-71913893:+ chr2:71748034:+ ZNF638 ENSG00000075292.19 protein_coding + + chr2:71276561-71435069:+ chr2:71403870:+ chr2:71503691-71662199:+ chr2:71631000:+ chr2:71524423,chr2:71524422 chr2:71402840,chr2:71402836 NA NA chr2:71751553,chr2:71751552 chr2:71629970,chr2:71629966 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none C2_domain(32%),FerI_(NUC094)_domain(54%)|Zinc-finger_double-stranded_RNA-binding(100%) C2(51%),FerI(1%)|zf-C2H2_jaz(100%) 2 3 4 32 82 ENST00000258104.8 ENST00000409544.5 downstream upstream none CTTTTCTTCAACTTGTTTGACTCTCCTGGGGAGCTGTTTGATGAGCCCATCTTTATCACG___GTGGTAGACTCTCGTTCTCTCAGGACAGATGCTCTCCTCGGGGAGTTCCGG___ATGGACGTGGGCACCATTTACAGAGAGCCCC___GGCACGCCTATCTCAGGAAGTGGCTGCTGCTCTCAGACCCTGATGACTTCTCTGCTGGGGCCAGAGGCTACCTGAAAACAAGCCTTTGTGTGCTGGGGCCTGGGGACGAAGCGCCT|GCATATATAGAAATAAATAGAAAAGCTGCTGAGTCTATGGTAAAATTTTATACCTGCTTCCCAGTATTGATGGATGGAAATCAACTCTCAATAAGTATGGCTCCTGAAAgCATGAATATAAAAGATGAG___GAAGCTATATTTATAACCTTGGTAAAAGAAAATGACCCAGAG___GCAAAC...ATTCATAAGTAATAGAAACAAG___GCAATTCTTCAGTTAGATAGTCCTGAATCTGCTCAGTCAATGTATAGCTTTCTGAAACAAAATCCACAAAATATTGGTG LFFNLFDSPGELFDEPIFITVVDSRSLRTDALLGEFRMDVGTIYREPRHAYLRKWLLLSDPDDFSAGARGYLKTSLCVLGPGDEAP|AYIEINRKAAESMVKFYTCFPVLMDGNQLSISMAPEsMNIKDEEAIFITLVKENDPEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23608 DYSF::ZNF638 ENSG00000135636.16::ENSG00000075292.19 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4011 TRUE 1512 DYSF ENSG00000135636.16 protein_coding + + chr2:71453561-71686763:+ chr2:71520904:+ chr2:71680691-71913893:+ chr2:71748034:+ ZNF638 ENSG00000075292.19 protein_coding + + chr2:71276561-71435069:+ chr2:71405601:+ chr2:71503691-71662199:+ chr2:71632731:+ chr2:71524423,chr2:71524422 chr2:71402840,chr2:71402836 NA NA chr2:71751553,chr2:71751552 chr2:71629970,chr2:71629966 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none C2_domain(32%),FerI_(NUC094)_domain(54%)|Zinc-finger_double-stranded_RNA-binding(100%) C2(51%),FerI(1%)|zf-C2H2_jaz(100%) 0 1 0 32 82 ENST00000258104.8 ENST00000409544.5 downstream upstream none CTGGGGCCTGGGGACGAAGCGCCT|GAAGCTATATTTATAACCTTGGTAAAAGAAAATGACCCAGAG___GCAAACATAGATACAATTTATGATCGATTTGTACA...ATGTATTCATAAGTAATAGAAACAAG___GCAATTCTTCAGTTAGATAGTCCTGAATCTGCTCAGTCAATGTATAGCTTTCTGAAACAAAATCCACAAAATATT LGPGDEAP|EAIFITLVKENDPEANIDTIYDRFV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23613 NOSIP::ENSG00000269469 ENSG00000142546.14::ENSG00000269469.1 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOSIP ENSG00000142546.14 protein_coding - + chr19:49555468-49590262:- chr19:49556539:+ chr19:50058725-50093519:- chr19:50059796:+ ENSG00000269469 ENSG00000269469.1 protein_coding + + chr19:49462752-49486231:+ chr19:49474603:+ chr19:49966009-49989488:+ chr19:49977860:+ chr19:49557202,chr19:49557202 chr19:49474230,chr19:49474227 NA NA chr19:50060459,chr19:50060459 chr19:49977487,chr19:49977484 NA NA antisense sense unknown exon 3'UTR/splice-site duplication/3'-3' high none none |Flt3_lig(100%) 3 0 2 17 104 unknown ENST00000599536.1 downstream upstream mismatches(1) CCGGCCGTGATTTCTCCGCTTGCAGCTTCACTCCGGAGCCCGCGAAGCCG___...TCACAGGGTCCACCATGTCCTTCCGAATCAGCTTCTCCACGCATTCGAGGGTGACCACAGCCCCACTACGGTGAGGCCGAAGGCGGGAGACTCTGATCAGGGGCCTTCCTGGGGACCTACTGGCCCCAAAGCCGGACCGCCCCGCAGGTTCCCGAGTGGTCCCTTCCCTCCCCTCCCAG|ACCCGGCGACAGGAGGCATGAGGGGCCCCCGGCCGAAATGACAGTGCTGGCGCCAGCCTGGAGCCCAACA___ACCTATCTCCTCCTGCTGCTGCTGCTGAGCTCGGGACTCAGTGGGACCCAGGACTGCTCCTTCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23614 LINC00174::PLPPR5-AS1 ENSG00000179406.10::ENSG00000232825.3 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC00174 ENSG00000179406.10 lncRNA - - chr7:66376044-66493566:- chr7:66476259:- chr7:65841031-65958553:- chr7:65941246:- PLPPR5-AS1 ENSG00000232825.3 lncRNA + + chr1:99004276-99244794:+ chr1:99181698:+ chr1:99469832-99710350:+ chr1:99647254:+ chr7:66454689,chr7:66454696 chr1:99171176,chr1:99171169 NA NA chr7:65919676,chr7:65919683 chr1:99636732,chr1:99636725 NA NA sense sense unknown exon/splice-site intron translocation high none none none 0 1 3 5 1 ENST00000638517.1 unknown upstream upstream none CAG___GGATTGTGCTGCATTCTGACTTGGATTCTGCCATCGAACACAGAATGCCCTGATCCTTAGATGCAGAGGCAGCTCTTCAGCCTATGGG___GGCTGCTGTAAAATATTACAGGCATACTTTGGAGATGTTACGGGTTTGGTTCCACATCACTGCAATAAA|AAATGTGCAAGTATAACTTTTCCTGAAATCAGACGACTG...TGTGATTTTTATAGGCATGAAATGTAGATACTATGGCACTGTTGCTTCATTCATTTTAACCATCTCTAACACCCTATGATGATGACCGGGAGAAATAAAGCAGCCAGTTTGCAATCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23615 LINC00174::PLPPR5 ENSG00000179406.10::ENSG00000117598.14 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC00174 ENSG00000179406.10 lncRNA - - chr7:66376044-66493566:- chr7:66476259:- chr7:65841031-65958553:- chr7:65941246:- PLPPR5 ENSG00000117598.14 protein_coding - + chr1:98890245-99227929:- chr1:99181698:+ chr1:99355801-99693485:- chr1:99647254:+ chr7:66454689,chr7:66454696 chr1:99171176,chr1:99171169 NA NA chr7:65919676,chr7:65919683 chr1:99636732,chr1:99636725 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' high none none none 0 1 2 5 1 ENST00000638517.1 unknown upstream upstream none CAG___GGATTGTGCTGCATTCTGACTTGGATTCTGCCATCGAACACAGAATGCCCTGATCCTTAGATGCAGAGGCAGCTCTTCAGCCTATGGG___GGCTGCTGTAAAATATTACAGGCATACTTTGGAGATGTTACGGGTTTGGTTCCACATCACTGCAATAAA|AAATGTGCAAGTATAACTTTTCCTGAAATCAGACGACTG...TGTGATTTTTATAGGCATGAAATGTAGATACTATGGCACTGTTGCTTCATTCATTTTAACCATCTCTAACACCCTATGATGATGACCGGGAGAAATAAAGCAGCCAGTTTGCAATCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23625 CDKN2A::MTAP ENSG00000147889.18::ENSG00000099810.21 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- MTAP ENSG00000099810.21 protein_coding + - chr9:21802636-21937651:+ chr9:21828097:- chr9:21802635-21937650:+ chr9:21828096:- chr9:21982658 chr9:21911534 NA NA chr9:21982657 chr9:21911533 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Cyclin-dependent_kinase_inhibitor_2a_p19Arf_N-terminus(100%)| P19Arf_N(100%)| 1 1 2 13 2 ENST00000530628.2 unknown upstream downstream low_entropy(1),mismatches(2) GGCGCTGCTCACCTCTGGTGCCAAAGGGCGGCGCAGCGGgTGCCGgGCTCGGCCCTGGAGGCGGCGAGAACATGGTGCGCAGGTTCTTGGTGACCCTCCGGATTCGGCGCGCGTGCGGCCCGCCGCGAGTGAGGGTTTTCGTGGTTCACATCCCGCGGCTCACGGGGGAGTGGGCAGCGCCAGGGGCGCCCGCCGCTGTGGCCCTCGTGCTGATGCTACTGAGGAGCCAGCGTCTAGGGCAGCAGCCGCTTCCTAGAAGACCAG|TCTCCATCTTCTGACCCAACTGCTTTCTTGAAAGAGCCAGTATGTGAAACATCTACATTTAAGACAT___AGACAAGGTCTCACT...___GAAATCCCAATCCTTCCTTA MVRRFLVTLRIRRACGPPRVRVFVVHIPRLTGEWAAPGAPAAVALVLMLLRSQRLGQQPLPRRP|vsif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 23675 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2195 TRUE 4023 FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 46 53 52 434 1222 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(7),inconsistently_clipped(2),mismappers(11),mismatches(14) GCCCGGTTCCGCCATTGCGGCTCTCCTGGCCCCTGGAGCCTCCGCCCCCGACCCGAGCTCTTTCGTCTGCCTGCCAGTTTCCTGCGTCCCCGGAGAGGATCCTGCTGAGCCCAGCCTCCCCCCTCCCCTTCTCCTCCTCTCCCTTGGAGAGCCCGGGCAGCCACTGCCCCGCAGCCCCAGTGACAGGAGGAGACCATAACCCCCGACAGCGCCATGGCCCAGATTCTGCCAATTCGTTTTCAGGAGCATCTCCAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATC MAQILPIRFQEHLQ|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23679 MAP4::CDC25A ENSG00000047849.22::ENSG00000164045.12 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2198 FALSE NA FALSE NA MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:48088773:- chr3:47892180-48130762:- chr3:48130263:- CDC25A ENSG00000164045.12 protein_coding - - chr3:48157146-48188417:- chr3:48177988:- chr3:48198636-48229907:- chr3:48219478:- chr3:48002091,chr3:48002096 chr3:48180004,chr3:48180006 NA NA chr3:48043581,chr3:48043586 chr3:48221494,chr3:48221496 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |M-phase_inducer_phosphatase(59%),Rhodanese-like_domain(100%) |M-inducer_phosp(60%),Rhodanese(100%) 4 21 4 204 103 ENST00000360240.10 ENST00000302506.8 upstream downstream mismatches(2) CGCTGGCTCCCGGCTCCTCCCGACGTCTCCTACCTCCTCACGGCTCTTCCCGGCGCTCTCCTGGCTCCCTTCTGCCCCAGCTCCGTCTCGGCGGCGGCGG|CTTTCCTCAAATGAAAGAGATAGCAGTGAACCAGGGAATTTCATTCCTCTTTTTACACCCCAGTCACCTGTGACAGCCACTTTGTCTGATGAGGATGATGGCTTCGTGGACCTTCTCGATGGAGAGAATCTGAAG___AATGAGGAGGAGACCCCCTCGTGCATGGCAAGCCTCTGGACAGCTCCTCTCGTCATGAGAACTACAAACCTT___GACAACCGATGCAAGCTGTTTGACTCCCCTTCCCTGTGTAGCTCCAGCACTCGGTCAGTGTTGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23680 PDS5B::TDRD3 ENSG00000083642.19::ENSG00000083544.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2199 TRUE 4024 TRUE 1513 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60439688:+ chr13:60970591-61148012:+ chr13:61013822:+ chr13:32636348,chr13:32636342 chr13:60427977,chr13:60427968 NA NA chr13:33210485,chr13:33210479 chr13:61002111,chr13:61002102 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RecQ_mediated_genome_instability_protein(100%),Tudor_domain(100%),UBA/TS-N_domain(100%) |RMI1_N(100%),SMN(100%),TUDOR(100%),UBA(100%) 0 26 1 90 96 ENST00000315596.15 ENST00000377881.8 downstream upstream duplicates(1) GATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG|GTATCTTTCAGATGAAGGCATTGAAGCTTGCACAAGCTCTCCAGACAAAGTCAATGTAAATGACATCATCCTGATTGCTCTCAAT___ACAGATCTGAGAACAATTGGCAAGAAATTCCTCCCCAGTGACATCAATAGTGGAAAGGTAGAAAAG___CTCGAAGGTCCATGTGTTTTGCAAATTCAAAAAATTCGCAATGTTGCTGCACCAAAGGATAATGAAGAATCTCAGGCTGCACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATAAGTTGCACAGCAGTAGAATTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23681 PDS5B::TDRD3 ENSG00000083642.19::ENSG00000083544.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4024 TRUE 1513 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60460380:+ chr13:60970591-61148012:+ chr13:61034514:+ chr13:32636348,chr13:32636342 chr13:60427977,chr13:60427968 NA NA chr13:33210485,chr13:33210479 chr13:61002111,chr13:61002102 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RecQ_mediated_genome_instability_protein(100%),Tudor_domain(100%),UBA/TS-N_domain(100%) |RMI1_N(25%),SMN(100%),TUDOR(100%),UBA(100%) 0 5 1 90 93 ENST00000315596.15 ENST00000377881.8 downstream upstream none CTGGCTGCGGAAGGGGAGGGGGGGGGAGAAGGCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG|CTCGAAGGTCCATGTGTTTTGCAAATTCAAAAAATTCGCAATGTTGCTGCACCAAAGGATAATGAAGAATCTCAGGCTGCACCAAGGATGCTGCGATTACAGATGACTGATGGTCATATAAGTTGCACAGCAGTAGAATTTAGTTATATGTCAAAAATAAG___CCTGAACACACCACCTG...GCTCTTGAATGACTCTAACACCACAGTTCTTGGTGGTGAAGTGGAACACCTTATTGAGAAATGGGAGTTACAGAGA___AGCTTATCAAAACACAATAGAAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23682 PDS5B::TDRD3 ENSG00000083642.19::ENSG00000083544.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4024 TRUE 1513 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60444683:+ chr13:60970591-61148012:+ chr13:61018817:+ chr13:32636348,chr13:32636342 chr13:60427977,chr13:60427968 NA NA chr13:33210485,chr13:33210479 chr13:61002111,chr13:61002102 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RecQ_mediated_genome_instability_protein(100%),Tudor_domain(100%),UBA/TS-N_domain(100%) |RMI1_N(82%),SMN(100%),TUDOR(100%),UBA(100%) 0 2 1 90 86 ENST00000315596.15 ENST00000377881.8 downstream upstream duplicates(1) CTGGCTGCGGAAGGGGAGGGGGGGGGAGAAGGCGATTGGATGCGGCGGCGGCGGCGGATCCCGGAGAGCCCCGGAGTGAGCGGAGTAGCGAGTCGGCAACCCGGAG|ACAGATCTGAGAACAATTGGCAAGAAATTCCTCCCCAGTGACATCAATAGTGGAAAGGTAGAAAAG___CTCGAAGGTCCATGTGTTTTGCAAATTCAAAAAATTCGCAATGTTGCTGCACCAAAGGATAATGAAGAATCTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23683 PPIL2::CCDC116 ENSG00000100023.20::ENSG00000161180.11 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPIL2 ENSG00000100023.20 protein_coding + + chr22:21666000-21700015:+ chr22:21669962:+ chr22:22020289-22054304:+ chr22:22024251:+ CCDC116 ENSG00000161180.11 protein_coding + - chr22:21632716-21637329:+ chr22:21634204:- chr22:21987005-21991618:+ chr22:21988493:- chr22:21670597,chr22:21670598 chr22:21636126,chr22:21636125 NA NA chr22:22024886,chr22:22024887 chr22:21990415,chr22:21990414 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/3'-3' high none none none 6 10 10 143 23 ENST00000335025.12 unknown downstream downstream duplicates(3),mismatches(1) CCATGGTCTGAGTTGTCAGCCGTTGTTTTTTCGTGCTCGCTAGTCGCCGCCGCCGCTCCGCCATGGGGAAGCGACAGCACCAAAAGGACAAAAT___GTACATTACCTGTGCTGAATACACTCACTTTTATGGTGGCAAGAAGCCAG|GCTGTCCAGGACCTGGCTCTCAGTTAGGAAATCCAGAAAGTGGCCAAAGGGCTGAGGGTGCCTCTTGTTTCGGCGTTGGCCCTGGAGTGCTGAGCTGCCACATGTGGATGGTGGGTGTGGCACACGGCCCGGCTTGCAGGCTGGCCGCATTTCTGGGACCAGTGGCTTCTTGGGCAGCTGCACCTGAGCAGACAG___GCAGGCAGTTTCCAGA MGKRQHQKDKMYITCAEYTHFYGGKKP|gcpgpgsqlgnpesgqraegascfgvgpgvlschmwmvgvahgpacrlaaflgpvaswaaapeqtgrqfp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23684 CRK::SMG6 ENSG00000167193.8::ENSG00000070366.14 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2200 FALSE NA FALSE NA CRK ENSG00000167193.8 protein_coding - - chr17:1420689-1463162:- chr17:1455877:- chr17:1323983-1366456:- chr17:1359171:- SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2300664:- chr17:1963133-2207079:- chr17:2203958:- chr17:1451837,chr17:1451843 chr17:2302139,chr17:2302142 NA NA chr17:1355131,chr17:1355137 chr17:2205433,chr17:2205436 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SH2_domain(74%)|Est1_DNA/RNA_binding_domain(100%),PIN_domain(100%),Telomerase_activating_protein_Est1(100%) SH2(1%)|EST1(100%),EST1_DNA_bind(100%),PIN_4(100%) 4 5 9 118 34 ENST00000300574.3 ENST00000263073.11 upstream downstream mismatches(3) GGCAACTTCGACTCGGAGGAGCGGAGTAGCTGGTACTGGGGGcGGTTGAGTCGGCAGGAGGCGGTGGCGCTGCTGCAGGGCCAGCGGCACGGGGTGTTCCTGGTGCGGGACTCGAGCACCAGCCCCGGGGACTATGTGCTCAGCGTCTCAGAGAACTCGCGCGTCTCCCACTACATCATCAACAGCAGCGGCCCGCGCCCGCCGGTGCCACCGTCGCCCGCCCAGCCTCCGCCCG|AAAACATGAAGGAATTAAAGGAGGCCAGGCCGCGCAAAGATAACAGGCGTCCAGATCTGGAAATCTATAAGCCTGGCCTTTCTCGGCTAAGGAACAAGCCCAAAATCAAGGAACCCCCTGGGAGTGAGGAATTCAAAGATGAAATTGTTAATGACCGAGATTGCTCTGCTGTTGAAAATGGTACACAGCCCGTTAAAGATGTCTGCAAGGAACTGAACAACCAAGAGCAGAATGGTCCTATAGACCCAGAAAATAATCGGGGACAAGAATCCTTTCCTAGGACTGCT GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPP|eNMKELKEARPRKDNRRPDLEIYKPGLSRLRNKPKIKEPPGSEEFKDEIVNDRDCSAVENGTQPVKDVCKELNNQEQNGPIDPENNRGQESFPRT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23685 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2201 TRUE 4025 TRUE 1514 ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25052235:+ chr12:25157276-25261269:+ chr12:25205169:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Josephin(2%)|MRVI1_protein(100%) Josephin(0%)|MRVI1(100%) 1 15 0 91 63 ENST00000647161.1 ENST00000636465.1 upstream upstream mismappers(2),mismatches(4) GGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAA|TCAGAAACAACTAGAAGCCATTAAACAACTACAGGAAGATGCTGTCAACCAGGAAGGCATCCTTAGGAAGAGGCTCCAAGAAACCAGCCAACGGCTGGAGGATGTGGAGGAGCAGGTAGG...AAAAAAAAAAAGCAAAGAGGAACTGCAAGTTCAGTCCCTAGCGACTAACAGT...___GGTAAGGATCGAGATCGAGAAGCCCACACTGCCAGTGAAAAAGCTACGTCTTTACTGCATAAATTAGAGGAAGCAATTTCGGAACAACGGAA MESIFHEK|settrsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23686 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4025 TRUE 1514 ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25061592:+ chr12:25157276-25261269:+ chr12:25214526:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Josephin(2%)|MRVI1_protein(100%) Josephin(0%)|MRVI1(100%) 0 2 0 91 36 ENST00000647161.1 ENST00000636465.1 upstream upstream none CAGACAAATAAACATGGAGTCCATCTTCCACGAGAAA|CAACAATTGAGTCACTTCAAAAGGAGTTCATTGAAGGGGAACACCATGGCTTGCTGTTTCAG___AGCTTTTTAGATGA...ATCTCTCAGGCTGCATCAGGATGAATGATGACCCAAGTATGGAA___GAGAATGGTGTTGAACGCGTGTGTCCTGAGAGCCTGCTGCAGTCCAG___GGAATATTCC MESIFHEK|qqlshfkrsslkgntmaccfraf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23687 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4025 TRUE 1514 ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25062820:+ chr12:25157276-25261269:+ chr12:25215754:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Josephin(2%)|MRVI1_protein(100%) Josephin(0%)|MRVI1(100%) 0 2 0 91 58 ENST00000647161.1 ENST00000636465.1 upstream upstream mismatches(1) CTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAA|AGCTTTTTAGATGAGGAATTTCCTCACTATGATTCCCTGTCCTGCGCAGATGCAATTCAACAACCTCTTCAAGAAAAATTG___CAGTGTTGCCACAAACTATATGGTGGTCAAGAAGCAAGA...CAGTTCCAACCCTGGAATCAACACCTTTCTCAGGTGTAGCCAACCAAATCCACACTCTGTGTGAAAGGCCCACATATGGAGAAGTAAAGGATGGTGCTTTG MESIFHEK|SFLDEEFPHYDSLSCADAIQQPLQEKLQCCHKLYGGQEA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23688 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4025 TRUE 1514 ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25066365:+ chr12:25157276-25261269:+ chr12:25219299:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Josephin(2%)|MRVI1_protein(100%) Josephin(0%)|MRVI1(100%) 0 1 0 91 71 ENST00000647161.1 ENST00000636465.1 upstream upstream none CTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAA|ATGCCTTATCTCTGGATAGTTTTACAGCAGTTCCAACCCTGGAATCAACACCTTTCTCAGGTGTAGCCAACCAAATCCACACTCTGTGTGAAAGGCCCACATATGGAG MESIFHEK|mpylwivlqqfqpwnqhlsqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23689 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4025 TRUE 1514 ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25079244:+ chr12:25157276-25261269:+ chr12:25232178:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none Josephin(2%)|MRVI1_protein(92%) Josephin(0%)|MRVI1(69%) 0 1 0 91 109 ENST00000393287.9 ENST00000636465.1 upstream upstream none GGTGGTTCGGCGTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAA|GAGAATGGTGTTGAACGCGTGTGTCCTGAGAGCCTGCTGCAGTCCAG___GGAATATTCCTCACTACCATTACCCAGACACACTTCATCG MESIFHEK|ENGVERVCPESLLQSREYSSLPLPRHTS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23691 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2202 TRUE 4026 TRUE 1515 AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57085398:+ chr17:55162453-55198707:+ chr17:55162759:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28489214:+ chr17:26800311-26824799:+ chr17:26816232:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Sodium:sulfate_symporter_transmembrane_region(95%) |CitMHS(100%),Na_sulph_symp(33%) 1 9 0 72 33 ENST00000337714.8 ENST00000314669.10 downstream upstream duplicates(1),inconsistently_clipped(1),mismatches(1) CCGGGCCGCGGGGCACAGCCGGGGGCCGGCGGCGGCGCGCGGACTCCGCATCCCGCACCCCGATGGTAGCCGAGGAGCTG|GAGGCCTACTGCGCGTATGCCATCATCCTCATGGCGCTCTTCTGGTGCACTGAGGCCCTGCCCCTGGCCGTCACTGCCCTCTTCCCCTTAATCCTG...CGTtGATtgCTCTGAG___GTTGCCGTCGAGTATCTTAAGGACTCCAACCTCCTGTTCTTCGGGGGGCTGCTGGTGGCCATCGCGGTGGAACACTGGAACCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23692 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4026 TRUE 1515 AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57086537:+ chr17:55162453-55198707:+ chr17:55163898:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28489214:+ chr17:26800311-26824799:+ chr17:26816232:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Sodium:sulfate_symporter_transmembrane_region(95%) |CitMHS(100%),Na_sulph_symp(33%) 2 2 0 6 33 ENST00000571629.5 ENST00000314669.10 downstream upstream none CGCACCCCGATGGTAGCCGAGGAGCTG___GGAGGGATAGGAGAAGAAAGGTGCTGATCGTGGTAGGCGGTGCTGTGGCGACTCGGAACGGCATGGGAGCCCTGGGCGTTTCGGGATCTTCCTCTCCT...TTCCTGCCGCCGTTAACACAAACCCGGTGGACTTCGCTCCAG|GAGGCCTACTGCGCGTATGCCATCATCCTCATGGCGCTCTTCTGGTGCACTGAGGCCCTGCCCCTGGCCGTCA...TGAG___GTTGCCGTCGAGTATCTTAAGGACTCCAACCTCCTGTTCTTCGGGGGGCTGCTGGTGGCCATCGCGGTGGAACACTGGAACCTGCATAAACGCATCG...TGTCCATGTGGATCAGCAACACGGCCACCTCAGCCATGATGGTGCCCATCGCACATGCCGTCCTGGACCAGCTGCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23693 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4026 TRUE 1515 AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57086537:+ chr17:55162453-55198707:+ chr17:55163898:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28487410:+ chr17:26800311-26824799:+ chr17:26814428:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |Sodium:sulfate_symporter_transmembrane_region(95%) |CitMHS(100%),Na_sulph_symp(41%) 0 1 1 6 7 ENST00000571629.5 ENST00000459818.2 downstream upstream none GGGAGCCCTGGGCGTTTCGGGATCTTCCTCTCCTGGGGGATGTCCTGGGTGGCGGCGCCTTCCTGCCGCCGTTAACACAAACCCGGTGGACTTCGCTCCAG|CTGTGAAATGTGAACAATAGTTATTACCTCTGAGAGCAAATAAATGCAACTTGTAAAAGCATTTGAAGCACATAGAATATGACGCCTGGCACAAAGTCATCC...TCGTTGGGGTGCGGCCTGCCCC___GCTAATCCTGGGCTTCATGCTGGTCACGGCCTTCCTGTCCATGTGGATCAGCAACACGGCCACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23694 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4026 TRUE 1515 AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57085398:+ chr17:55162453-55198707:+ chr17:55162759:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28487410:+ chr17:26800311-26824799:+ chr17:26814428:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |Sodium:sulfate_symporter_transmembrane_region(95%) |CitMHS(100%),Na_sulph_symp(41%) 0 2 0 72 7 ENST00000337714.8 ENST00000579281.5 downstream upstream duplicates(1) CCGCATCCCGCACCCCGATGGTAGCCGAGGAGCTG|CTGTGAAATGTGAACAATAGTTATTACCTCTGAGAGCAAATAAATGCAACTTGTAAAAGCATTTGAAGCACATAGA...CCTGGCACAAAGTCATCCTCCAATACTTATACAGAAACTTCTTCCTGAATCAGCAGA___GAGGCCTACTGCGCGTATGCCATCATCCTCATGGCGCTCTTCTGGTGCACTGAGGCCCTGCCCCTGGCCGTCACTGCCCTCTTCCCCTTAATCCTGTTCCCTATGATGGGCATCGTGGATGCCTCTGAG___GTTGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23695 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4026 TRUE 1515 AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57085398:+ chr17:55162453-55198707:+ chr17:55162759:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28490701:+ chr17:26800311-26824799:+ chr17:26817719:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |Sodium:sulfate_symporter_transmembrane_region(72%) |CitMHS(77%),Na_sulph_symp(27%) 0 1 0 72 119 ENST00000337714.8 ENST00000444914.7 downstream upstream none CCGGGGGCCGGCGGCGGCGCGCGGACTCCGCATCCCGCACCCCGATGGTAGCCGAGGAGCTG|GCTAATCCTGGGCTTCATGCTGGTCACGGCCTTCCTGTCCATGTGGATCAGCAACACGGCCACCTCAGCCATGATGGTGCCCATCGCACATGCCGTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23696 CAMK2D::ENSG00000286147 ENSG00000145349.20::ENSG00000286147.1 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4027 TRUE 1516 CAMK2D ENSG00000145349.20 protein_coding - - chr4:113418054-113761927:- chr4:113609152:- chr4:114339210-114683083:- chr4:114530308:- ENSG00000286147 ENSG00000286147.1 lncRNA + + chr4:106525401-106938640:+ chr4:106911058:+ chr4:107446558-107859797:+ chr4:107832215:+ chr4:113553415,chr4:113553418 chr4:106903156,chr4:106903153 NA NA chr4:114474571,chr4:114474574 chr4:107824313,chr4:107824310 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(61%),Pkinase(61%)| 2 0 2 99 0 ENST00000683023.1 ENST00000650850.1 upstream upstream none CGCGGGGCCAGTCCCGGGGTTAGCCGCGCGTCTGCTCGCTTCTGGTCCGTCGCGCTCCCAGCCAGGGCACAGCCCGGACCGAGGATGGCTTCGACCACAAC...CTTTCTGCTAGGG___ATCATCAGAAACTAGAAAGAGAAGCTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTG___TGCGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTT|GACGGCAACATAGAGTCTTCCAGGGGCTACATG LSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDl|tat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit delta CAMK CAMK2 Q13557 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23697 CAMK2D::ENSG00000286147 ENSG00000145349.20::ENSG00000286147.1 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4027 TRUE 1516 CAMK2D ENSG00000145349.20 protein_coding - - chr4:113418054-113761927:- chr4:113609152:- chr4:114339210-114683083:- chr4:114530308:- ENSG00000286147 ENSG00000286147.1 lncRNA + + chr4:106525401-106938640:+ chr4:106920071:+ chr4:107446558-107859797:+ chr4:107841228:+ chr4:113553415,chr4:113553418 chr4:106903156,chr4:106903153 NA NA chr4:114474571,chr4:114474574 chr4:107824313,chr4:107824310 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(61%),Pkinase(61%)| 1 0 0 99 7 ENST00000683023.1 ENST00000650850.1 upstream upstream none CGCGCGaCTGCTCGCTTCTGGTCCGTCGCGCTCCCAGCCAGGGCACAGCCCGGACCGAGGATGGCTTCGACCACAACCTGCACCAGGTTCACGGACGAGTA...CATGATAGCATATCAGAAGAcGGCTTTCACTACTTGGTGTTTGATTT|CTCCTGGGaACAACAGCTAAATTTCCCACCACcCCACATCCTGAGAGGATCC HDSISEdGFHYLVFDf|sweqqlnfppphilrg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit delta CAMK CAMK2 Q13557 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23698 CAMK2D::ENSG00000286147 ENSG00000145349.20::ENSG00000286147.1 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4027 TRUE 1516 CAMK2D ENSG00000145349.20 protein_coding - - chr4:113418054-113761927:- chr4:113609152:- chr4:114339210-114683083:- chr4:114530308:- ENSG00000286147 ENSG00000286147.1 lncRNA + + chr4:106525401-106938640:+ chr4:106934679:+ chr4:107446558-107859797:+ chr4:107855836:+ chr4:113553415,chr4:113553418 chr4:106903156,chr4:106903153 NA NA chr4:114474571,chr4:114474574 chr4:107824313,chr4:107824310 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Protein_kinase_domain(27%)| PK_Tyr_Ser-Thr(61%),Pkinase(61%)| 1 0 0 99 3 ENST00000683023.1 ENST00000650850.1 upstream upstream none CTAGAATCTGCCGTCTTTTGAAGCACCCTAATATTG___TGCGACTTCATGATAGCATATCAGAAGAGGGCTTTCACTACTTGGTGTTTGATTT|GAATTAAGCCAGATCAATAGTCAAATTCTACTCTGCTTTTGAAGAAACAGCTGAAGGAAGCAGATAAAATTTGAAAGACTGTTCTTT RICRLLKHPNIVRLHDSISEEGFHYLVFDl|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase type II subunit delta CAMK CAMK2 Q13557 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23699 CDC45::ZNF28 ENSG00000093009.11::ENSG00000198538.11 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC45 ENSG00000093009.11 protein_coding + + chr22:19479457-19520612:+ chr22:19480217:+ chr22:19466980-19508135:+ chr22:19467740:+ ZNF28 ENSG00000198538.11 protein_coding - + chr19:52797408-52857600:- chr19:52844315:+ chr19:53300661-53360853:- chr19:53347568:+ chr22:19480875,chr22:19480875 chr19:52841553,chr19:52841550 NA NA chr22:19468398,chr22:19468398 chr19:53344806,chr19:53344803 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none CDC45-like_protein(3%)| CDC45(0%)| 2 1 0 223 4 ENST00000437685.6 unknown downstream upstream mismatches(1) GCCGTGGCTATGTTCGTGTCCGATTTCCGCAAAGAGTTCTACGAGGTGGTCCAGAGCCAG___AGGGTCCTTCTCTTCGTGGCCTCGGACGTGGATGCTCTGTGTGCGTGCAAGATCCTTCAG|GACACAGCAGGAAGATGGCTGGGCTAAACCATGAAGAATGCTCTCACCAGGAAGCAATTTGGCTGGCACCTTGCTCTTGGATTTCCC MFVSDFRKEFYEVVQSQRVLLFVASDVDALCACKILQ|dtagrwlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23718 GNB1L::UFD1 ENSG00000185838.14::ENSG00000070010.19 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GNB1L ENSG00000185838.14 protein_coding - - chr22:19783223-19854939:- chr22:19854443:- chr22:19770746-19842462:- chr22:19841966:- UFD1 ENSG00000070010.19 protein_coding - + chr22:19449911-19479202:- chr22:19475506:+ chr22:19437434-19466725:- chr22:19463029:+ chr22:19846375,chr22:19846381 chr22:19467508,chr22:19467502 NA NA chr22:19833898,chr22:19833904 chr22:19455031,chr22:19455025 NA NA sense antisense unknown 5'UTR/splice-site CDS inversion/5'-5' medium none none none 1 1 1 219 750 ENST00000460402.5 unknown upstream upstream none GCCGGCTTGAACTCCGTGCACGCGGGCCTGGAGCTGCGCCCCTGCGTCTTTTCCCGACTTCTGATCCGCAGAGGGGCACTCGGAGCCCCAGCCTGGGTCGC...CCACGGTCTGTGGCTACGGATCCCAGGACCCTCTTCGCGGGCGATTCGCGTAGCCTCAG|GCCCTGCTAGCATGGACACAGAGAAGCAGCGGTACTGTGTGGAGAAGCGGTTTTGGAAGACCCTGGGAATAGGGTGGTCGAACATGTTGAAAGAGAACTAGAAGGAGGAAAGAGAAACAAGTATTAAAACAAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23726 TEX14::TNFRSF13B ENSG00000121101.16::ENSG00000240505.9 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TEX14 ENSG00000121101.16 protein_coding - - chr17:58556678-58692055:- chr17:58630440:- chr17:56634039-56769416:- chr17:56707801:- TNFRSF13B ENSG00000240505.9 protein_coding - - chr17:16929816-16972118:- chr17:16948983:- chr17:16833130-16875432:- chr17:16852297:- chr17:58626620,chr17:58626622 chr17:16950464,chr17:16950463 NA NA chr17:56703981,chr17:56703983 chr17:16853778,chr17:16853777 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion medium none Ankyrin_repeats_(3_copies)(64%)|TACI__cysteine-rich_domain(55%) Ank_2(74%),TAP42(100%)|TACI-CRD2(3%) 1 0 1 2 1 ENST00000389934.7 ENST00000584950.5 upstream downstream none CAGcGTTTGGTGTTGCGTTATTgTAACTGCTGTTTGCTGTTGGTGAtCGTTCTTCTCTAGAGAAGGCA___GAATTTATGTTGATGCAGTTAACTCCTTGGGCCAAACAGCACTTTTTGTTGCGGCGTTATTGGGCCTTAGGAAATTCGTTGATGTTCTGGTGGATTATGGATCAGATCCAAATCA|GGTCACTCAGCTGCCGC...GGAGTGGAGAAGTTGAAAACAATTCAGACAACTCGGGAAGGTACCAAGGATTGGAGCACAGAGGCTCAGAAGCAAGTCCAGGTAAGCCACCCAAGGCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Inactive serine/threonine-protein kinase TEX14 Other NKF5 Q8IWB6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23736 ZBTB8OS::ZBTB8A ENSG00000176261.16::ENSG00000160062.15 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZBTB8OS ENSG00000176261.16 protein_coding - - chr1:32600172-32650903:- chr1:32650429:- chr1:33065773-33116504:- chr1:33116030:- ZBTB8A ENSG00000160062.15 protein_coding + - chr1:32539427-32605941:+ chr1:32582667:- chr1:33005028-33071542:+ chr1:33048268:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Archease_protein_family_(MTH1598/TM1083)(2%)| Archease(0%)| 1 0 2 746 1 ENST00000373506.8 unknown upstream downstream mismappers(1) CGCAGGAAGAGGAAGATGTTAGAGATTACAATTTGACTGAAGAACAGAAGGCGATCAAGGCCAAGTATCCGCCAGTCAATAGGAAGTACGAGTGTGA|GTTGAGTATCCTTCTTTTTTTTT QEEEDVRDYNLTEEQKAIKAKYPPVNRKYECe|lsillff NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23737 ZBTB8OS::ENSG00000254553 ENSG00000176261.16::ENSG00000254553.1 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZBTB8OS ENSG00000176261.16 protein_coding - - chr1:32600172-32650903:- chr1:32650429:- chr1:33065773-33116504:- chr1:33116030:- ENSG00000254553 ENSG00000254553.1 protein_coding + - chr1:32465057-32600792:+ chr1:32582667:- chr1:32930658-33066393:+ chr1:33048268:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Archease_protein_family_(MTH1598/TM1083)(2%)| Archease(0%)| 1 0 2 746 1 ENST00000373506.8 unknown upstream downstream mismappers(1) CGCAGGAAGAGGAAGATGTTAGAGATTACAATTTGACTGAAGAACAGAAGGCGATCAAGGCCAAGTATCCGCCAGTCAATAGGAAGTACGAGTGTGA|GTTGAGTATCCTTCTTTTTTTTT QEEEDVRDYNLTEEQKAIKAKYPPVNRKYECe|lsillff NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23750 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4035 TRUE 1517 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188154252:+ chr3:187871072-188608460:+ chr3:187872040:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189000774:+ chr3:188665003-189043093:+ chr3:188718563:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Inositol_phosphatase_(100%) |hSac2(100%) 0 1 0 34 9 ENST00000617246.5 ENST00000433971.5 downstream upstream none CCACCACCGCCGCTGCCCCGGCTGCCTCCTCCCTGAG|GATCTCACTCTGTTGCCTAGGCTGGAATGTGGTGGCATGATCAtAGCTCACTGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23751 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4035 TRUE 1517 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188153363:+ chr3:187871072-188608460:+ chr3:187871151:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189000774:+ chr3:188665003-189043093:+ chr3:188718563:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Inositol_phosphatase_(100%) |hSac2(100%) 0 0 0 25 9 ENST00000448637.5 ENST00000433971.5 downstream upstream mismappers(1) CGCCTGGGCCCGCTCCTCGATCTGCTGAGTGACGACCCTGTACAAGTCATTTCTCTTCCGAGAGCTTCAGTTTCCTCACGTGCCAAGCGGACGGGTTGGAAGTTGGTCTTTGCCAGCTCTGACACCTT|GATCTCACTCTGTTGCCTAGGCTGGAATGTGGTGGCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23753 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2203 TRUE 4036 TRUE 1518 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59674843:+ chr17:57697045-57774317:+ chr17:57752204:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59688112,chr17:59676211 chr17:59826743,chr17:59825171 NA NA chr17:57765473,chr17:57753572 chr17:57904104,chr17:57902532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(29%)| Clathrin(51%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 26 52 45 685 1175 ENST00000269122.8 ENST00000262291.9 downstream upstream duplicates(18),low_entropy(1),mismappers(6),mismatches(11) GATTTGACTTTGTCCATGATTTGGTGCTCTATTTATATAGAAATAATCTTCAAAAGTATATAGAGATATATGTACAGAAG___GTGAATCCAAGTCGACTTCCTGTAGTTATTGGAGGATTACTTGATGTTGACTGTTCTGAAGATGTCATAAAAAACTTGATTCTTGTTGTAAGAGGTCAATTCTCTACTGATGAGCTTGTTGCTGAGGTTGAAAAAAGAAACAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAG FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNs|AVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23754 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2204 TRUE 4036 TRUE 1518 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59688112 chr17:59826743 NA NA chr17:57765473 chr17:57904104 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(100%)| Clathrin(100%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 12 17 61 1079 1175 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(9),mismatches(11) ACAATCGCTGGAAACAGAGTGTAGAGCTGTGCAAGAAAGACAGCCTTTACAAG___GATGCAATGCAGTATGCTTCTGAATCTAAAGATACTGAATTGGCTGAAGAACTCCTGCAGTGGTTTTTGCAGGAAGAAAAAAGAGAGTGCTTTGGAGCTTGTCTGTTTACCTGTTACGATCTTTTAAGGCCAGATGTCGTCCTAGAAACTGCATGGAGGCACAATATCATGGATTTTGCCATGCCCTATTTCATCCAGGTCATGAAGGAGTACTTGACAAAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTAT NRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTK|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23755 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4036 TRUE 1518 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59674843:+ chr17:57697045-57774317:+ chr17:57752204:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59834012:+ chr17:57784553-57919616:+ chr17:57911373:+ chr17:59688112,chr17:59676211 chr17:59826743,chr17:59825171 NA NA chr17:57765473,chr17:57753572 chr17:57904104,chr17:57902532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(29%)| Clathrin(51%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 2 0 52 685 13 ENST00000269122.8 ENST00000591877.2 downstream upstream duplicates(6),mismatches(8) GATTTGACTTTGTCCATGATTTGGTGCTCTATTTATATAGAAATAATCTTCAAAAGTATATAGAGATATATGTACAGAAG___GTGAATCCAAGTCGACTTCCTGTAGTTATTGGAGGATTACTTGATGTTGACTGTTCTGAAGATGTCATAAAAAACTTGATTCTTGTTGTAAGAGGTCAATTCTCTACTGATGAGCTTGTTGCTGAGGTTGAAAAAAGAAACAG|GCTGGAGGACAATGGCGCACTGCAACCTCCAC FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNr|LEDNGALQPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23757 SEC61A1::MGLL ENSG00000058262.11::ENSG00000074416.16 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEC61A1 ENSG00000058262.11 protein_coding + + chr3:128051641-128071705:+ chr3:128068059:+ chr3:127770484-127790548:+ chr3:127786902:+ MGLL ENSG00000074416.16 protein_coding - + chr3:127689062-128052190:- chr3:127784586:+ chr3:127407905-127771033:- chr3:127503429:+ chr3:128069439 chr3:127778790 NA NA chr3:127788282 chr3:127497633 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Plug_domain_of_Sec61p(100%),SecY(88%)| Plug_translocon(100%),SecY(88%),TIP49(4%)| 6 14 9 2281 35 ENST00000699273.1 unknown downstream upstream duplicates(1),mismatches(2) ACATAGTGTTCATGCTGGGCTCCTGTGCATTCTTCTCCAAAACGTGGATTGAGGTCTCAGGTTCCTCTGCCAAAGAT___GTTGCAAAGCAGCTGAAGGAGCAGCAGATGGTGATGAGAGGCCACCGAGAGACCTCCATGGTCCATGAACTCAACCG|GAAGAGCCCGTTGGCAGCACCTGTAGGCTTAGCCTTCCACAGCCCCACACTTCCACCCCCAGGCCCGGTCAGCACCCTGAGAGCCCACCTTTGGACACCTGGACTCATTCTGATCTTCAGCTTCTATTGTG___CCTTCCAGAAACTTCGCATTGCAACAGAACAAAGGTTGTCTGCCTCTGAAACACCTCTCCCCCTCTGCCCTGCTCCCGAGCTCCGAGGCCTCCTTTCTGGTGCCCAGATGTGCC IVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNr|ksplaapvglafhsptlpppgpvstlrahlwtpglilifsfycafqklriateqrlsasetplplcpapelrgllsgaqmc NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23758 LRP11::ENSG00000264324 ENSG00000120256.11::ENSG00000264324.1 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4037 TRUE 1519 LRP11 ENSG00000120256.11 protein_coding - - chr6:149818757-149864359:- chr6:149836085:- chr6:150139893-150185495:- chr6:150157221:- ENSG00000264324 ENSG00000264324.1 protein_coding - - chr2:74211604-74363377:- chr2:74216216:- chr2:74438731-74590504:- chr2:74443343:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation high none Low-density_lipoprotein_receptor_domain_class_A(100%),MANEC_domain(100%)| Ldl_recept_a(100%),MANEC(100%),PKD_4(100%)|THF_DHG_CYH_C(100%) 8 14 4 364 73 ENST00000239367.7 ENST00000451608.2 upstream downstream duplicates(1) GTAACCCACACGGCAGCTAGTCCTGCCCTGCCAAGAACCACAGGGCCGAGTGAAGATGCAGGGGGTGACTCCTTGGTGGAAAAGTCTCAGAAAGCCACTGCCCCAAACAAGCCACCTGCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|GTAAGCAGGCATGGATTAGAGACATAAGCTATACGTCACTTACAAAAACATCTCCAGCAAACTATCTAAACTTCTTTAAACTCCAGAGAACTATCAAAAGAATAACGCCAGCTGGCAGAAGAACGAGGACGGAG___GTTAATGGCTGCTCCTGGCTAGATCACAGGACCCTGCATGATACTGGAATGCTCCC VTHTAASPALPRTTGPSEDAGGDSLVEKSQKATAPNKPPALSNTEKRNHSAFWGPESQIIPVMP|gkqawirdisytsltktspanylnffklqrtikritpagrrtrtevngcswldhrtlhdtgml NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23759 LRP11::ENSG00000264324 ENSG00000120256.11::ENSG00000264324.1 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4037 TRUE 1519 LRP11 ENSG00000120256.11 protein_coding - - chr6:149818757-149864359:- chr6:149836085:- chr6:150139893-150185495:- chr6:150157221:- ENSG00000264324 ENSG00000264324.1 protein_coding - - chr2:74211604-74363377:- chr2:74214475:- chr2:74438731-74590504:- chr2:74441602:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site translocation low none Low-density_lipoprotein_receptor_domain_class_A(100%),MANEC_domain(100%)| Ldl_recept_a(100%),MANEC(100%),PKD_4(100%)|THF_DHG_CYH_C(100%) 0 1 0 364 988 ENST00000239367.7 ENST00000451608.2 upstream downstream none GCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|GTTAATGGCTGCTCCTGGCTAGATCACAGGACCCTGCATGATACTGGAATGCTCCCTGGTGAGGTACTGCAGAGGTATGTGCAGAAACACC ALSNTEKRNHSAFWGPESQIIPVMP|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23761 ENSG00000285991::ENSG00000264324 ENSG00000285991.1::ENSG00000264324.1 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4038 TRUE 1520 ENSG00000285991 ENSG00000285991.1 protein_coding - - chr6:149817937-149896011:- chr6:149836085:- chr6:150139073-150217147:- chr6:150157221:- ENSG00000264324 ENSG00000264324.1 protein_coding - - chr2:74211604-74363377:- chr2:74216216:- chr2:74438731-74590504:- chr2:74443343:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense sense unknown 3'UTR/splice-site 3'UTR/splice-site translocation high none none Ldl_recept_a(100%),MANEC(100%),MHC_I(100%),MHC_I_2(100%),PKD_4(100%)|THF_DHG_CYH_C(100%) 8 14 4 364 73 ENST00000647612.1 ENST00000451608.2 upstream downstream duplicates(1) GTAACCCACACGGCAGCTAGTCCTGCCCTGCCAAGAACCACAGGGCCGAGTGAAGATGCAGGGGGTGACTCCTTGGTGGAAAAGTCTCAGAAAGCCACTGCCCCAAACAAGCCACCTGCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|GTAAGCAGGCATGGATTAGAGACATAAGCTATACGTCACTTACAAAAACATCTCCAGCAAACTATCTAAACTTCTTTAAACTCCAGAGAACTATCAAAAGAATAACGCCAGCTGGCAGAAGAACGAGGACGGAG___GTTAATGGCTGCTCCTGGCTAGATCACAGGACCCTGCATGATACTGGAATGCTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23762 ENSG00000285991::ENSG00000264324 ENSG00000285991.1::ENSG00000264324.1 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4038 TRUE 1520 ENSG00000285991 ENSG00000285991.1 protein_coding - - chr6:149817937-149896011:- chr6:149836085:- chr6:150139073-150217147:- chr6:150157221:- ENSG00000264324 ENSG00000264324.1 protein_coding - - chr2:74211604-74363377:- chr2:74214475:- chr2:74438731-74590504:- chr2:74441602:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense sense unknown 3'UTR/splice-site 3'UTR/splice-site translocation low none none Ldl_recept_a(100%),MANEC(100%),MHC_I(100%),MHC_I_2(100%),PKD_4(100%)|THF_DHG_CYH_C(100%) 0 1 0 364 988 ENST00000647612.1 ENST00000451608.2 upstream downstream none GCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|GTTAATGGCTGCTCCTGGCTAGATCACAGGACCCTGCATGATACTGGAATGCTCCCTGGTGAGGTACTGCAGAGGTATGTGCAGAAACACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23764 CAD::KHK ENSG00000084774.14::ENSG00000138030.14 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2205 FALSE NA FALSE NA CAD ENSG00000084774.14 protein_coding + + chr2:27217369-27243943:+ chr2:27232694:+ chr2:27440237-27466811:+ chr2:27455562:+ KHK ENSG00000138030.14 protein_coding + + chr2:27086772-27100762:+ chr2:27097503:+ chr2:27309640-27323630:+ chr2:27320371:+ chr2:27233061 chr2:27097094 NA NA chr2:27455929 chr2:27319962 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(50%),Carbamoyl-phosphate_synthase_small_chain__CPSase_domain(100%),Carbamoyl-phosphate_synthetase_large_chain__oligomerisation_domain(100%),Glutamine_amidotransferase_class-I(100%)|pfkB_family_carbohydrate_kinase(45%) ATP-grasp(45%),CPSase_L_D2(44%),CPSase_L_D3(100%),CPSase_sm_chain(100%),Dala_Dala_lig_C(71%),GATase(100%)|PfkB(17%) 5 6 3 140 32 ENST00000264705.9 ENST00000260598.10 downstream upstream mismatches(3) CTGGGGATCTGTCCAGCAGTGAAACAGATTGACACAGTTGCAGCTGAGTGGCCAGCCCAGACAAATTACCTATACCTAACGTATTGGGGCACCACCCATGACCTCACCTTTCGAACACCTCATGTCCTAGTCCTTGGCTCTGGCGTCTACCGTATTGGCTCTAGCGTTGAATTTGACTGGTGTGCTGTAGGCTGCATCCAGCAGCTCCGAAAG|GGCCGGAACGCATCGGAGCAGGTGAAGATGCTGCAGCGGATAGACGCACACAACACCAGGCAGCCTCCAGAGCAGAAGATCCGGGTGTCCGTGGAGGTGGAGAAGCCACGAGAGGAGCTCTTCCAGCTGTTTGGCTACGGAGACGTG___GTGTTTGTCAGCAAAGATGTGGCCAAGCACTTGGGGTTCCAGTCAGCAGAGGAAGCCTTGAGGGGCTTGTATGGTCGTGTGAGGAAAGG___GGCTGTGCTTGTCTGTGCCTGGGCTGAGGAGGGCGCCGACGCCCTGGGCCCTGATGGC LGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPHVLVLGSGVYRIGSSVEFDWCAVGCIQQLRK|GRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23765 EHBP1::ENSG00000226622 ENSG00000115504.15::ENSG00000226622.7 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EHBP1 ENSG00000115504.15 protein_coding + + chr2:62673851-63046487:+ chr2:62874532:+ chr2:62900986-63273622:+ chr2:63101667:+ ENSG00000226622 ENSG00000226622.7 lncRNA - + chr2:62533681-62662829:- chr2:62613661:+ chr2:62760816-62889964:- chr2:62840796:+ chr2:62898797,chr2:62898798 chr2:62573298,chr2:62573296 NA NA chr2:63125932,chr2:63125933 chr2:62800433,chr2:62800431 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(100%)| NT-C2(100%)| 3 4 2 202 14 ENST00000405015.7 unknown downstream upstream duplicates(1) CCTGTTCAAGAACTAGAAACTGAAAGGCGAGTGAAAAGAAAGGCCCCGGCTCCACCAGTCCTCTCACCAAAAACAGGAGTATTAAATGAAAACACAGTTTCTGCAGGAAAAGATCTCTCTACTTCTCCTAAG|GTCACAGAGAGAGATGAGGTAGCTGAGGGCAGGTCCAGCTGGCTGGAGGGAAAAAAATACCAGAAGTGTTATCCTGGAAGAGGTCACAGAAAAGAAAACATGAACATTGATTCAGAAGAAGAGATGAATGGTTGGGAACCAAGACAGGGTGAAATCAAGGATGGCTGAGGAAACAG___ATGAAGTGACAAGTGAGCCAGATTTTGGATGATtCAAGGA PVQELETERRVKRKAPAPPVLSPKTGVLNENTVSAGKDLSTSPK|vterdevaegrsswlegkkyqkcypgrghrkenmnidseeemngweprqgeikdg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23767 GPHN::PALS1 ENSG00000171723.16::ENSG00000072415.10 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:66681185:+ chr14:66974125-67648520:+ chr14:67147903:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67269701:+ chr14:67707430-67802778:+ chr14:67736418:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none Probable_molybdopterin_binding_domain(10%)|Guanylate_kinase(100%),L27_N(100%),L27_domain(100%),PDZ_domain(100%),Variant_SH3_domain(100%) MoCF_biosynth(38%)|Guanylate_kin(100%),L27(100%),L27_N(100%),PDZ(100%),PDZ_6(100%),SH3_1(100%),SH3_2(100%) 3 3 0 115 181 ENST00000315266.9 ENST00000677382.1 downstream upstream duplicates(1),mismatches(1) GTGACTGCGCTGGGAAACATGGCGACCGAGGGAATGATCCTTACTAACCACGACCATCAAATCCGTGTCGGAGTCCTTACAG___TGAGTGATAGTTGCTTCAGGAATCTTGCAGAAGACCGCAGTGGGATAAATCTCAAAGATCTCGTACAAGATCCTTCTTT|AATAAGAAAGCCTTGAGTTTTGTGAAAAACCGGAGAAGAGAAACTAAAAGGACAGTAGAAAAGGCTTTTCCAGTTTGCATAAT___...CCTTCATGGATACTTTTTCATAGCATTATTATGTGATGTGAGAAGTTTTTTTTTTT?AAGTAACATGGATTTT...___AGGAACATCAGAAGCACCGAGAGATGGC MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSl|irkp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23768 LRP11::MTHFD2 ENSG00000120256.11::ENSG00000065911.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRP11 ENSG00000120256.11 protein_coding - - chr6:149818757-149864359:- chr6:149836085:- chr6:150139893-150185495:- chr6:150157221:- MTHFD2 ENSG00000065911.13 protein_coding + - chr2:74186172-74217565:+ chr2:74216130:- chr2:74413299-74444692:+ chr2:74443257:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR translocation/5'-5' high none Low-density_lipoprotein_receptor_domain_class_A(100%),MANEC_domain(100%)| Ldl_recept_a(100%),MANEC(100%),PKD_4(100%)| 3 1 2 364 67 ENST00000239367.7 unknown upstream downstream mismatches(1) GTGCAGCAGTGTCCTGATGGGTCTGATGAAGACTTCTGCCAGAATC___TGGGCCTGGACCGCAAGATGGTAACCCACACGGCAGCTAGTCCTGCCCTGCCAAGAACCACAGGGCCGAGTGAAGATGCAGGGGGTGACTCCTTGGTGGAAAAGTCTCAGAAAGCCACTGCCCCAAACAAGCCACCTGCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|AGAACTATCAAAAGAATAACGCCAGCTGGCAGAAGAACGAGGACGGAG___GTTAATGGCTGCTCCTGGCTAGATCACAG...TTGAGCTGGCCTGGAGTGCTGTTTGTGACACAGAAGACACAGTAGTTAATTAGTGGCTACCCCAAGCTCTTTAGACTTCAGCACTTCTCGCTCTTCAAGCC VQQCPDGSDEDFCQNLGLDRKMVTHTAASPALPRTTGPSEDAGGDSLVEKSQKATAPNKPPALSNTEKRNHSAFWGPESQIIPVMP|enyqknnaswqknedgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23769 ENSG00000285991::MTHFD2 ENSG00000285991.1::ENSG00000065911.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285991 ENSG00000285991.1 protein_coding - - chr6:149817937-149896011:- chr6:149836085:- chr6:150139073-150217147:- chr6:150157221:- MTHFD2 ENSG00000065911.13 protein_coding + - chr2:74186172-74217565:+ chr2:74216130:- chr2:74413299-74444692:+ chr2:74443257:- chr6:149833507,chr6:149833509 chr2:74217566,chr2:74217566 NA NA chr6:150154643,chr6:150154645 chr2:74444693,chr2:74444693 NA NA sense antisense unknown 3'UTR/splice-site 3'UTR translocation/5'-5' high none none Ldl_recept_a(100%),MANEC(100%),MHC_I(100%),MHC_I_2(100%),PKD_4(100%)| 3 1 2 364 67 ENST00000647612.1 unknown upstream downstream mismatches(1) GTGCAGCAGTGTCCTGATGGGTCTGATGAAGACTTCTGCCAGAATC___TGGGCCTGGACCGCAAGATGGTAACCCACACGGCAGCTAGTCCTGCCCTGCCAAGAACCACAGGGCCGAGTGAAGATGCAGGGGGTGACTCCTTGGTGGAAAAGTCTCAGAAAGCCACTGCCCCAAACAAGCCACCTGCATTATCAAACACAGAGAAGAGGAATCATTCCGCCTTTTGGGGACCAGAGAGTCAAATCATTCCTGTGATGCCAG|AGAACTATCAAAAGAATAACGCCAGCTGGCAGAAGAACGAGGACGGAG___GTTAATGGCTGCTCCTGGCTAGATCACAG...TTGAGCTGGCCTGGAGTGCTGTTTGTGACACAGAAGACACAGTAGTTAATTAGTGGCTACCCCAAGCTCTTTAGACTTCAGCACTTCTCGCTCTTCAAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23779 COX16::FARP1 ENSG00000133983.16::ENSG00000152767.17 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA COX16 ENSG00000133983.16 protein_coding - - chr14:70325081-70416984:- chr14:70359519:- chr14:70791798-70883701:- chr14:70826236:- FARP1 ENSG00000152767.17 protein_coding + - chr13:98142562-98455176:+ chr13:98180724:- chr13:98794816-99107430:+ chr13:98832978:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Cytochrome_c_oxidase_assembly_protein_COX16(9%)| COX16(0%),PDZ(100%),PDZ_2(48%),PDZ_6(100%)| 3 1 0 3469 1 ENST00000389912.7 unknown upstream downstream none GCTCGATTGCTTTTGCCTAGCGGAAACCATTCACTAAGGACCGAGCACCAAATAACCAAGGAAAAGGAAGTGAGTTAAGGACGTACTCGTCTTGGgGAGAG...ATTTGGGAGTCTGCGCTAGGCCCGCTTGGAGTTCTGAGCCGATGGAAGAGTTCACTCATGTTTGCACCCGCGGTGATGCGTGCTTTTCGCAAGAACAAGACTCTCGGCTATGGAGTCCCCATGTTG|GCAGATTCCCACAAAAGGAGCCAGAAGAAAGAGACACCAGAGAAAACAAGAACATCAATAATATTTTAGAAGAAATAAAGTGAaCTGAAAAATCTCAACTAAC MFAPAVMRAFRKNKTLGYGVPML|adshkrsqkketpektrtsiif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23784 ENSG00000237813::CAV1 ENSG00000237813.4::ENSG00000105974.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4039 TRUE 1521 ENSG00000237813 ENSG00000237813.4 lncRNA - - chr7:116238260-116499465:- chr7:116465189:- chr7:115878314-116139519:- chr7:116105243:- CAV1 ENSG00000105974.13 protein_coding + + chr7:116524994-116561179:+ chr7:116558946:+ chr7:116165048-116201233:+ chr7:116199000:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Caveolin(82%) |Caveolin(1%) 0 1 1 3 11507 ENST00000439070.1 ENST00000341049.7 upstream upstream none AGAGGAACTAGCTGCTGAGAGTCCGAAGAGCCTGGGAAGAG|ATTGACTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGTTTTGACGGCATTTGG...TTACTTCGCCATTCTCTCTTTCCTGCACATCTGGGCAGTTGTACCATGCATTAAGAGCTTCCTGATTGAGATTCAGTGCATCAGCCGTGTCTATTCCATC...AAATATTCAGCAATGTCCGCATCAACTTGCAGAAAGAAATATAAATGACATTTCAAGGATAGAAGTATACCTGATTTTTTTTCCTTTTAATTTTCCTGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23785 ENSG00000237813::CAV1 ENSG00000237813.4::ENSG00000105974.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4039 TRUE 1521 ENSG00000237813 ENSG00000237813.4 lncRNA - - chr7:116238260-116499465:- chr7:116482813:- chr7:115878314-116139519:- chr7:116122867:- CAV1 ENSG00000105974.13 protein_coding + + chr7:116524994-116561179:+ chr7:116558946:+ chr7:116165048-116201233:+ chr7:116199000:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Caveolin(82%) |Caveolin(1%) 0 1 1 38 11507 ENST00000446355.2 ENST00000341049.7 upstream upstream none CTAGCTCTCTGTGGCACTGAGCAAG|ATTGACTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGTTTTGACGGCATTTGGAAGGCCAGCTTCACCA...CCGCTTGCTGTCTGCCCTCTTTGGCATCCCGATGGCACTCATCTGGGGCATTTACTTCGCCATTCTCTCTTTCCTGCACATCTGGGCAGTTGTACCATGCATTAAGAGCTTCCTGATTGAGATTCAGTGCATCAGCCGTGTCTATTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23786 ENSG00000237813::CAV1 ENSG00000237813.4::ENSG00000105974.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4039 TRUE 1521 ENSG00000237813 ENSG00000237813.4 lncRNA - - chr7:116238260-116499465:- chr7:116499354:- chr7:115878314-116139519:- chr7:116139408:- CAV1 ENSG00000105974.13 protein_coding + + chr7:116524994-116561179:+ chr7:116558946:+ chr7:116165048-116201233:+ chr7:116199000:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Caveolin(82%) |Caveolin(1%) 0 1 1 54 11507 ENST00000446355.2 ENST00000341049.7 upstream upstream none CGAGGAGGGCCTCCTGGTCACCCTTCTGGGGGCCCGTACTGTCATGCCTCAGAGCTGGCAAGTCGTCCCAGGGAAGACAACGGCCTTCCTGGAGGGAGGGAACCTTGTGGTTAGGCGCATGGGGTGCGAAGCAG|ATTGACTTTGAAGATGTGATTGCAGAACCAGAAGGGACACACAGTTTTGACGGCATTTGGAAGGCCAGCTTCACCACCTTC...TTACTTCGCCATTCTCTCTTTCCTGCACATCTGGGCAGTTGTACCATGCATTAAGAGCTTCCTGATTGAGATTCAGTGCATCAGCCGTGTCTATTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23789 ADAP1::COX19 ENSG00000105963.15::ENSG00000240230.6 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ADAP1 ENSG00000105963.15 protein_coding - - chr7:897900-955407:- chr7:905591:- chr7:937537-995043:- chr7:945228:- COX19 ENSG00000240230.6 protein_coding - - chr7:898778-975549:- chr7:906235:- chr7:938415-1015185:- chr7:945872:- NA NA NA NA NA NA NA NA sense sense unknown exon intron duplication low none Putative_GTPase_activating_protein_for_Arf(100%)| ArfGap(100%),PH(71%)|PH(32%) 1 4 0 7092 4632 ENST00000478000.5 unknown upstream downstream duplicates(2),mismatches(3) TTTCTCCTTTCTCCTTTCCCTTTCTCCTTTCTCCTTTCcCtTTcCCCTTTCTCCTTTCCCTTTCTCCTTTCCCTTTCTCCTTTCTCCTTTCTCCTTTCTCCTT|TCCCTTTCTCCTTTCCCTTTCTCCTTTCTCCTTTCTCCTTTCTCCTTTCTCCTTTCCCTTTCTCCTTTCTCCTTTCTCCTTTCtCTTTtcCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 959605 FALSE 1009092 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23799 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2207 TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SNARE_associated_Golgi_protein(100%) none 167 300 183 1062 3105 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(106),low_entropy(4),mismatches(97) CAGCGGCTGTGGTGGCTGCGGCGGG?CCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|GGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGG___GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAG MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|GPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE|TRUE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23800 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59765052:+ chr17:57784553-57919616:+ chr17:57842413:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SNARE_associated_Golgi_protein(100%) none 5 4 94 1062 3611 ENST00000225577.9 ENST00000589823.7 downstream upstream duplicates(8),low_entropy(1),mismatches(36) TGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGG?CCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|ATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGG___GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|IICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23801 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59773754:+ chr17:57784553-57919616:+ chr17:57851115:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SNARE_associated_Golgi_protein(100%) none 4 21 72 1062 4696 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(4),mismatches(21) GCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGG?CCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAA___GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTT MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|GIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23802 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 4 42 11 1062 4575 ENST00000225577.9 ENST00000710770.1 downstream upstream duplicates(1),mismatches(5) GCGGCTGTGGTGGCTGCGGCGGG?CCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23803 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SNARE_associated_Golgi_protein(58%) none 6 7 38 1062 4580 ENST00000225577.9 ENST00000262291.9 downstream upstream duplicates(2),mismappers(1),mismatches(11) CGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG|GACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCA___ATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGAC MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEG|DFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23804 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893924:+ chr17:57970407-58027935:+ chr17:57971285:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense unknown UTR/splice-site CDS/splice-site duplication medium none |SNARE_associated_Golgi_protein(100%) none 3 5 186 10 3105 ENST00000393021.7 ENST00000262291.9 downstream upstream duplicates(13),mismatches(65) GAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGG___GAAGCGCTCAGCTGTTAGAAGTGACAGCTGAAAACTTCTGTCGGGAGTAGCACTGCCGCTGCTGTTACAGCCACCAGGAGTTTTATTTCGGGAGCAAGGGGGCTCTGCTGCATCTTCCAATCTTCCAGG|GGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGG___GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE|TRUE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23805 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893924:+ chr17:57970407-58027935:+ chr17:57971285:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59765052:+ chr17:57784553-57919616:+ chr17:57842413:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense unknown UTR/splice-site CDS/splice-site duplication medium none |SNARE_associated_Golgi_protein(100%) none 0 1 97 10 3611 ENST00000393021.7 ENST00000589823.7 downstream upstream duplicates(4),mismatches(35) CGCTCAGCTGTTAGAAGTGACAGCTGAAAACTTCTGTCGGGAGTAGCACTGCCGCTGCTGTTACAGCCACCAGGAGTTTTATTTCGGGAGCAAGGGGGCTCTGCTGCATCTTCCAATCTTCCAGG|ATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGG___GGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23806 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4041 TRUE 1522 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893924:+ chr17:57970407-58027935:+ chr17:57971285:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense unknown UTR/splice-site CDS/splice-site duplication medium none none none 0 1 11 10 4575 ENST00000393021.7 ENST00000262291.9 downstream upstream mismatches(3) GGCTCTGCTGCATCTTCCAATCTTCCAGG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23810 JAM3::KIRREL3 ENSG00000166086.13::ENSG00000149571.12 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA JAM3 ENSG00000166086.13 protein_coding + + chr11:134069071-134152001:+ chr11:134069159:+ chr11:133938966-134021896:+ chr11:133939054:+ KIRREL3 ENSG00000149571.12 protein_coding - - chr11:126423358-127003460:- chr11:126562912:- chr11:126293253-126873355:- chr11:126432807:- chr11:134129217,chr11:134129216 chr11:126567933,chr11:126567934 NA NA chr11:133999112,chr11:133999111 chr11:126437828,chr11:126437829 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%) |C2-set_2(100%),I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%) 19 72 20 501 136 ENST00000441717.3 ENST00000525144.7 downstream downstream duplicates(8),mismappers(7),mismatches(3) CGCTGCCGCTGGCCCCTCAGCAACCCTCGACATGGCGCTGAGGCGGCCACCGCGACTCCGGCTCTGCGCTCGGCTGCCTGACTTCTTCCTGCTGCTGCTTTTCAGGG|AGCTGGGCCTCCAGAAGAGAGGATGCTGTCTGGTGCTGGGCTACATGGCCAAGGACAAGTTTCGGAGAATGAATGAAG___GCCAAGTCTATTCCTTCAGCCAGCAGCCCCAGGACCAGGTGGTGGTGTCGGGACAGCCAGTGACGCTACTTTGCGCCATCCCCGAATACGATGGCTTCGTTCTGTGGATCAAGGACGGCTTGGCTCTGGG MALRRPPRLRLCARLPDFFLLLLFR|eLGLQKRGCCLVLGYMAKDKFRRMNEGQVYSFSQQPQDQVVVSGQPVTLLCAIPEYDGFVLWIKDGLAL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23814 MAP2K2::DOCK2 ENSG00000126934.15::ENSG00000134516.20 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP2K2 ENSG00000126934.15 protein_coding - - chr19:4090321-4124122:- chr19:4110509:- chr19:4090319-4124119:- chr19:4110507:- DOCK2 ENSG00000134516.20 protein_coding + - chr5:169637268-170083382:+ chr5:169696220:- chr5:169064272-169510386:+ chr5:169123224:- chr19:4108621,chr19:4108625 chr5:169706626,chr5:169706627 NA NA chr19:4108619,chr19:4108623 chr5:169133630,chr5:169133631 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Protein_kinase_domain(26%)| ABC1(0%),PK_Tyr_Ser-Thr(38%),Pkinase(26%)| 33 14 14 1384 34 ENST00000262948.10 unknown upstream downstream duplicates(4),mismatches(1) AAAGGATCTCAGAGCTGGGCGCGGGCAACGGCGGGGTGGTCACCAAAGTCCAGCACAGACCCTCGGGCCTCATCATGGCCAGGAAG___CTGATCCACCTTGAGATCAAGCCGGCCATCCGGAACCAGATCATCCGCGAGCTGCAGGTCCTGCACGAATGCAACTCGCCGTACATCGTGGGCTTCTACGGGGCCTTCTACAGTGACGGGGAGATCAGCATTTGCATGGAACACATG|AGCTGGGGAGCAAAGGTGTCAACTGCTCAGACGGCCCCGGTCTCCCGATGCTCTACTCCAGACAAGAGGAGCCCATGATTCACTGTGTTCATCATAAATCTGGACTTAGTCACCAATTATTTTGATTTAGTCACCAGAAATGTAGTTATTAAGGGCTGTCTGGC RISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHM|swgakvstaqtapvsrcstpdkrsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Dual specificity mitogen-activated protein kinase kinase 2 STE STE7 P36507 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mitogen-activated protein kinase kinase 2 1 Yes NSCLC, melanoma epithelial oncogene missense FALSE NA NA NA NA NA NA NA NA NA 23819 RDX::LINC02732 ENSG00000137710.17::ENSG00000254416.6 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RDX ENSG00000137710.17 protein_coding - - chr11:109864295-110296712:- chr11:110296467:- chr11:109735021-110167437:- chr11:110167192:- LINC02732 ENSG00000254416.6 lncRNA + - chr11:110355130-110407613:+ chr11:110372169:- chr11:110225855-110278337:+ chr11:110242893:- chr11:110283495 chr11:110399963 NA NA chr11:110154220 chr11:110270687 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 7 15 13 216 74 ENST00000645527.1 unknown upstream downstream duplicates(1),mismatches(4) CCCGCGGcCCAGCGCTCGCACCACCGCTTCTCCCTCCCTGTCGCAGCCGCGCCGCCGCGCAGCGCCCCAGCCACACGCCGGCGGGCAGAAGCCGCCCGCTCTCCGG|GCTAAATAATGGCTCCCAAAGATGTGTCTACATCCTAATCTCCAGAATCTGTGAATGTTACTTTATGTGGCAAGTACGTGGCAGATGTAATTAAGTCAAGGATCTTTGGATGGTTATCCTGAATTATCTGGGTGGGCCCTAAATACAATCACAAGTGTCCTTATAGGAGAGAGGCTGAAGGAGATTTGGTACCAACAGAAGAGGAGGAGGAAATTGTGATCATGCAGAAACTGGAGTGATGGAGTCACAAGCCAAGGAATGCCAGCAGCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23820 ACAA1::OXSR1 ENSG00000060971.19::ENSG00000172939.9 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACAA1 ENSG00000060971.19 protein_coding - - chr3:38103129-38137242:- chr3:38127786:- chr3:38144620-38178733:- chr3:38169277:- OXSR1 ENSG00000172939.9 protein_coding + - chr3:38165089-38255484:+ chr3:38189871:- chr3:38206580-38296975:+ chr3:38231362:- chr3:38126622,chr3:38126624 chr3:38193903,chr3:38193902 NA NA chr3:38168113,chr3:38168115 chr3:38235394,chr3:38235393 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Thiolase__N-terminal_domain(54%)| Thiolase_N(84%)| 5 16 12 437 28 ENST00000333167.13 unknown upstream downstream duplicates(2),low_entropy(2),mismatches(2) GGAAATATTACTTCGCGCTTGATGGAGAAGGAcAAGGCCAGAGATTGCCTGATTCCTATGGG___GATAACCTCTGAGAATGTGGCTGAGCGGTTTGGCATTTCACGGGAGAAGCAGGATACCTTTGCCCTGGCTTCCCAGCAGAA|GCTGAGAGCTCCATGAAGGCAAGTACTCAAAAGTAGATTCTCAATCACTGTGGAACTTATCTGACTATACTATAATTGCCTATTTCTTTTGACATCCCCCACAAAACTGTAAGCTCAGTGAGAACTAAAACTGTTCTTAGCACATATCATTGTGCCTGGCACAGAGTACACCTTCAATAAATATTTGTTGAATGAATGAAATACTACAGCACTTTATAAGGCTTTTCACCTATTAATGTACCTGCCCTATGCCCTTGGGATTTGTTC GNITSRLMEKdKARDCLIPMGITSENVAERFGISREKQDTFALASQQk|lrap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23821 PCBP1-AS1::LINC01816 ENSG00000179818.17::ENSG00000231327.3 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 2209 TRUE 4044 TRUE 1523 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70085547:- chr2:70187236-70330352:- chr2:70312679:- LINC01816 ENSG00000231327.3 lncRNA - - chr2:70124034-70132923:- chr2:70124425:- chr2:70351166-70360055:- chr2:70351557:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 13 5 12 377 138 ENST00000684630.1 ENST00000691543.2 upstream downstream duplicates(2),mismatches(2) GACGCCGCGGGTTTAAAACATGCGCGTGAG___AGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTG|AAACTGCCGCGATGAATGTCAGTCCCCAGAGCCGGAACCGTTCCCGGTTTTCTCTACTTGGATCTGAGAACTCTGTCCCTCCAGCCCTGCGAGCGCTTTGCCAGGGTGACGGGCGGAAATGTCCCCGCATCCGTGCCTGCTTTCCCAGATGGGACCCTCCAGCAGTCCCCTCCACTGCCCGTGCTTCCTCCTAACCACTTCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23822 PCBP1-AS1::LINC01816 ENSG00000179818.17::ENSG00000231327.3 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE TRUE 2210 TRUE 4044 TRUE 1523 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70059643:- chr2:70187236-70330352:- chr2:70286775:- LINC01816 ENSG00000231327.3 lncRNA - - chr2:70124034-70132923:- chr2:70124425:- chr2:70351166-70360055:- chr2:70351557:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 6 2 15 154 138 ENST00000413436.5 ENST00000691543.2 upstream downstream duplicates(1),mismatches(2) AGGAAGACAAACATAAAGATGAAGTGCTTAATTCAAGGTCACACAATGTCGGGGATGGACCTCCAGATTTCCTTACTG___GAAAACAAGCTCAGGGCTCCCACTGATTGTACATTATG|AAACTGCCGCGATGAATGTCAGTCCCCAGAGCCGGAACCGTTCCCGGTTTTCTCTACTTGGATCTGAGAACTCTGTCCCTCCAGCCCTGCGAGCGCTTTGCCAGGGTGACGGGCGGAAATGTCCCCGCATCCGTGCCTGCTTTCCCAGATGGGACCCTCCAGCAGTCCCCTCCACTGCCCGTGCTTCCTCCTAACCACTTCCCCCCAGCGACCGCGGAAGGCGCTTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23843 TDG::LRRC53 ENSG00000139372.15::ENSG00000162621.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4046 TRUE 1524 TDG ENSG00000139372.15 protein_coding + + chr12:103965822-103988874:+ chr12:103966060:+ chr12:104359600-104382652:+ chr12:104359838:+ LRRC53 ENSG00000162621.7 protein_coding - - chr1:74469376-74512611:- chr1:74483375:- chr1:74935060-74978295:- chr1:74949059:- chr12:103978483,chr12:103978484 chr1:74504573,chr1:74504573 NA NA chr12:104372261,chr12:104372262 chr1:74970257,chr1:74970257 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site translocation high none |Leucine_rich_repeat(100%) |LRR_5(100%),LRR_8(100%),PK_Tyr_Ser-Thr(95%),Pkinase(95%) 3 1 8 255 16 ENST00000544861.5 ENST00000294635.5 downstream downstream none GGGACaGTAGAAGCCTGGAGGAGGAGCTTGAGTCCAGCCACTGTCTGGGTACTGCCAGCCATCGGGCCCAGGTCTCTGGGGTTGTCTTACCGCAGTGAGTACCACGCGGTACTACAGAGACCGGCTGCCCGTGTGCCCGGCAGGTGGAGCCGCCCGCATCAGCGGCCTCGGGGAATGGAAGCGGAGAACGCGGGCAG|GTGGATGGCTGGTACTCTTTGCCATCATGTTGCGGTTGGTGGCAGCTTGCCCTGAGTCATGTGTGGTGTGCACCAAAGATGTAACCCTCTGTCACCAGCTAACCTATATA___AAATGGTATCGAGGATGTTCAGGAAGATGCCCTGCATGGGCTTACGATGTTGCGG...GCCTCATGTTCAAAGATGGCTGCTTGAGCTCTAGCAATCACATACATAGTTCAGGAAGCCCTATAGGAGAGGGTGAAAAGGAAAGACCTCCTACCTTTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23844 TDG::LRRC53 ENSG00000139372.15::ENSG00000162621.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4046 TRUE 1524 TDG ENSG00000139372.15 protein_coding + + chr12:103965822-103988874:+ chr12:103977060:+ chr12:104359600-104382652:+ chr12:104370838:+ LRRC53 ENSG00000162621.7 protein_coding - - chr1:74469376-74512611:- chr1:74483375:- chr1:74935060-74978295:- chr1:74949059:- chr12:103978483,chr12:103978484 chr1:74504573,chr1:74504573 NA NA chr12:104372261,chr12:104372262 chr1:74970257,chr1:74970257 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site translocation high none |Leucine_rich_repeat(100%) |LRR_5(100%),LRR_8(100%),PK_Tyr_Ser-Thr(95%),Pkinase(95%) 1 1 10 187 16 ENST00000392872.8 ENST00000294635.5 downstream downstream none CACAGAAAGGGGGTCCGTGGGGGACaaTAGAAGCCTGGAGGAGGAGCTTGAGTCCAGCCACTGTCTGGGTACTGCCAGCCATCGGGCCCAGGTCTCTGGGG...CCCGTGTGCCCGGCAGGgGGAGCCGCCCGCATCAGCGGCCTCGGGGAATGGAAGCGGAGAACGCGGGCAG___CTATTCCCTTCAGCAAGCTCAAGCTTTTTATACGTTTCCATTTCAACAACTGATGGCTGAAGCTCCTAATATGGCAGTTGTGAATGAACAGCAAATGCCAGAAGAAGTTCCAGCCCCAGCTCCTGCTCAGGAACCAGTGCAAG|GTGGATGGCTGGTACTCTTTGCCATCATGTTGCGGTTGGTGGCAGCTTGCCCTGAGTCATGTGTGGTGTGCACCAAAGATGTAACCCTCTGTCACCAGCTAACCTATATAGTAG___CAGCCCCTATGACCACGAGGGTTTTAATCATCA...___AAATGGTATCGAGGATGTTCAGGAAGATGCCCTGCATGGGCTTACGATGTTGCGG MEAENAGSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQ|ggwlvlfaiMLRLVAACPESCVVCTKDVTLCHQLTYIVAAPMTTRVLII NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23845 TDG::LRRC53 ENSG00000139372.15::ENSG00000162621.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4046 TRUE 1524 TDG ENSG00000139372.15 protein_coding + + chr12:103965822-103988874:+ chr12:103966060:+ chr12:104359600-104382652:+ chr12:104359838:+ LRRC53 ENSG00000162621.7 protein_coding - - chr1:74469376-74512611:- chr1:74480968:- chr1:74935060-74978295:- chr1:74946652:- chr12:103978483,chr12:103978484 chr1:74504573,chr1:74504573 NA NA chr12:104372261,chr12:104372262 chr1:74970257,chr1:74970257 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation high none |Leucine_rich_repeat(100%) |LRR_5(100%),LRR_8(100%),PK_Tyr_Ser-Thr(93%),Pkinase(93%) 1 1 4 255 17 ENST00000544861.5 ENST00000294635.5 downstream downstream none GGGGACaGTAGAAGCCTGGAGGAGGAGCTTGAGTCCAGCCACTGTCTGGGTACTGCCAGCCATCGGGCCCAGGTCTCTGGGGTTGTCTTACCGCAGTGAGTACCACGCGGTACTACAGAGACCGGCTGCCCGTGTGCCCGGCAGGTGGAGCCGCCCGCATCAGCGGCCTCGGGGAATGGAAGCGGAGAACGCGGGCAG|CAGCCCCTATGACCACGAGGGTTTTAATCATCACCGATGGATATCTCTCCTCTATTGAGAGCACAAACCTGTCTCTCTTGTTTAATCTTGCCCTGCTCTCCCTAAGCAGAAATGGTATCGAGGATGTTCAGGAAGATGCCCTGCATGGGCTTACGATGTTGCGGACCTTGTTGCTGGAGCACAACCAAATATCCAGCTCTTCGCTCACTGATCACACCTTCAGCAAGCTTCACAGCCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23846 TDG::LRRC53 ENSG00000139372.15::ENSG00000162621.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4046 TRUE 1524 TDG ENSG00000139372.15 protein_coding + + chr12:103965822-103988874:+ chr12:103977060:+ chr12:104359600-104382652:+ chr12:104370838:+ LRRC53 ENSG00000162621.7 protein_coding - - chr1:74469376-74512611:- chr1:74475810:- chr1:74935060-74978295:- chr1:74941494:- chr12:103978483,chr12:103978484 chr1:74504573,chr1:74504573 NA NA chr12:104372261,chr12:104372262 chr1:74970257,chr1:74970257 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation low none none |PK_Tyr_Ser-Thr(88%),Pkinase(88%) 1 0 0 187 24 ENST00000392872.8 ENST00000294635.5 downstream downstream none CGGGCAG___CTATTCCCTTCAGCAAGCTCAAGCTTTTTATACGTTTCCATTTCAACAACTGATGGCTGAAGCTCCTAATATGGCAGTTGTGAATGAACAGCAAATGCCAGAAGAAGTTCCAGCCCCAGCTCCTGCTCAGGAACCAGTGCAAG|GAGCTGTTGGTCTCACTTGCCT GSYSLQQAQAFYTFPFQQLMAEAPNMAVVNEQQMPEEVPAPAPAQEPVQ|gAVGLTC NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23847 FAM168B::SIL1 ENSG00000152102.18::ENSG00000120725.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM168B ENSG00000152102.18 protein_coding - - chr2:131047876-131093460:- chr2:131071855:- chr2:131805449-131851033:- chr2:131829428:- SIL1 ENSG00000120725.13 protein_coding - + chr5:138946724-139293557:- chr5:139263214:+ chr5:138282413-138629246:- chr5:138598903:+ chr2:131070755,chr2:131070757,chr2:131070760,chr2:131070762,chr2:131070765 chr5:139247310,chr5:139247311,chr5:139247314,chr5:139247003,chr5:139247300 NA NA chr2:131828328,chr2:131828330,chr2:131828333,chr2:131828335,chr2:131828338 chr5:138582999,chr5:138583000,chr5:138583003,chr5:138582692,chr5:138582989 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Tongue_Cancer_Chemotherapy_Resistant_Protein_1(26%)| TCRP1(36%)| 3 6 1 868 7 ENST00000389915.4 unknown upstream upstream mismatches(2) CTGGTTTTCCCATGGGCTATGCAGCAGCAGCTCCTGCCTATTCTCCTAACATGTATCCTGGAGCGAATCCTACCTTCCAAACAG|GTTTAACTAAGATTATTACAAGTTGAGTTAATTGGCTGAATGAAATAATGAGGCCAGGCCTAGAGGAAGTGGGGCTTTGAAGAAAAAAGCATGCTCATGCAGAATTGAAATAAAATCTTCAGACTCTCAGCAGTTTTTGAAGCCCCTGCTCTTTGGACTGTCCTCGTTCAGGCTCCAACCCAGATAGGGTTGGGAACTCTAGTATTTT GFPMGYAAAAPAYSPNMYPGANPTFQT|gltkiits* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23851 FAM172A::BACH2 ENSG00000113391.19::ENSG00000112182.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4048 TRUE 1525 FAM172A ENSG00000113391.19 protein_coding - - chr5:93617725-94111699:- chr5:93776159:- chr5:92953431-93447404:- chr5:93111865:- BACH2 ENSG00000112182.16 protein_coding - - chr6:89926528-90296843:- chr6:89938350:- chr6:90636247-91006562:- chr6:90648069:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Arb2_domain(100%)|bZIP_Maf_transcription_factor(100%) Arb2(100%)|bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%) 2 2 3 43 8 ENST00000395965.8 ENST00000257749.9 upstream downstream mismatches(1) CATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGACTTGCTTTTGTTGAACTG___ATGATTCAACGAGAAGCCGATGTAAAAA...CAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAG___AACTGTTGTAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGCAG|GTAAAACTTCCTTTTCCTGTAGATCAAATCACAGATCTTCCAAGGAACGATTTCCAGATGATGATTAAAATGCACAAGCTAACCTCAGAACAGTTAGAGTTTATTCATGATGTCCGACGGCGCAGCAAGAACCGCATCGCGGCCCAGCGCTGCCGCAAAAGGAAACTGGACTGTATTCAGAATTTAGAATGTGAAATCCGCAAATTG___GTGTGTGAGAAAGAGAAACTGTTGTCAGAGAGGAATCAACTGAAAGCAT QEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSA|gktsfscrsnhrsskerfpddd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23852 FAM172A::BACH2 ENSG00000113391.19::ENSG00000112182.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4048 TRUE 1525 FAM172A ENSG00000113391.19 protein_coding - - chr5:93617725-94111699:- chr5:93737812:- chr5:92953431-93447404:- chr5:93073518:- BACH2 ENSG00000112182.16 protein_coding - - chr6:89926528-90296843:- chr6:89938350:- chr6:90636247-91006562:- chr6:90648069:- NA NA NA NA NA NA NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none Arb2_domain(100%)|bZIP_Maf_transcription_factor(100%) Arb2(100%),Homeodomain(100%),Pou(100%)|bZIP_1(100%),bZIP_2(100%),bZIP_Maf(100%) 0 1 3 1 8 ENST00000502503.1 ENST00000257749.9 upstream downstream none TTCAAGTTAATTTTTGTATACGGTATGAG|GTAAAACTTCCTTTTCCTGTAGATCAAATCACAGATCTTCCAAGGAACGATTTCCAGATGATGATTAAAATGCACAAGCTAACCTCAGAACAGTTAGAGTTTATTCATGATGTCCGACGGCGCAGCAAGAACCGCATCGCGGCCCAGCGCTGCCGCAAAAGGAAACTGGACTGTATTCAGAATTTAGAATGTGAAATCCGCAAATTG___GTGTGTGAGAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23863 ENSG00000285679::STS ENSG00000285679.2::ENSG00000101846.9 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4050 TRUE 1526 ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:7929413:+ chrX:7896484-8342427:+ chrX:7897454:+ STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7678333:+ chrX:7065278-7772399:+ chrX:7596374:+ chrX:8026516,chrX:8026514 chrX:7419478,chrX:7419473 NA NA chrX:7994557,chrX:7994555 chrX:7337519,chrX:7337514 NA NA sense sense unknown exon/splice-site intron duplication high none none none 1 0 2 14 3 ENST00000659022.1 unknown downstream upstream none GGCAATCTGCAAACTGGAAAAGGGCCCTCCTCAGAACCTGACCATCTTGGCACCTTGATCTCAGACTTCCATCTTCCAGAACTGTGAGAAATAAATTTCTT...CTACTTTATTATAGCAGCCTGAATGGATTAAGACAGGTGGTCTGGTTTAAAGTGATGTGGTGGCATCAGAAGTTTAAGGAGAGACTGGcaTTACAGAACCA...GTCAGCAGGTCGATTCAGGAGACAGGTGAAAAaTTTATCACCGGGCAGCCTGGATGAACACCACAACTaTGATATCTTTCACTTAAAGGAAAGATAAGGG...CCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAG|CCTCTGTTGTCCCATAGAGAGTTGACATTCCTGGACATCTATGTGGCTTCACCCGGGCCCCTTCAGCACCTACTGAGGCCTGAAACTTCAACCAAGTTTGGAAGTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23864 ENSG00000285679::STS ENSG00000285679.2::ENSG00000101846.9 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4050 TRUE 1526 ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:7929413:+ chrX:7896484-8342427:+ chrX:7897454:+ STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7803301:+ chrX:7065278-7772399:+ chrX:7771342:+ chrX:8026516,chrX:8026514 chrX:7419478,chrX:7419473 NA NA chrX:7994557,chrX:7994555 chrX:7337519,chrX:7337514 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication low none none none 0 1 0 14 3 ENST00000659022.1 ENST00000664306.2 downstream upstream mismatches(1) CTAACCCCCAAGGTGATAGTATTAGGAGGTGGGGCCTTTGGGAGGTAATTAAGTCATGAGGGTGAAGCaCTCATGAATGGGATTAGTACTCTTAGAAAAGG...CCACAACTTTtATATtTTTCACTTAAAGGAAAGATAAGGGCATCCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAG|ACTGCATTTGCAACGATGCATGTCTGCAAGACCCCATGGACAACTTTCATCTGATGCACGCACTCATTCTTGCTTTGA...ATCTCACTATATCTCTGTCCTGCTGATGCCACCAAATGACCAGAGATGGTCCAGACAATTTACAAGAAAGGACGTGGGCAAGCCTCATcCAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23866 PACS1::ENSG00000256349 ENSG00000175115.13::ENSG00000256349.1 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66070842:+ chr11:65837743-66012215:+ chr11:65838313:+ ENSG00000256349 ENSG00000256349.1 protein_coding + + chr11:66509079-66533613:+ chr11:66514406:+ chr11:66276550-66301084:+ chr11:66281877:+ chr11:66077327,chr11:66077293 chr11:66512736,chr11:66512699 NA NA chr11:65844798,chr11:65844764 chr11:66280207,chr11:66280170 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Ciliary_BBSome_complex_subunit_1(87%) |BBS1(77%),GlcNAc_2-epim(23%) 1 1 1 57 53 ENST00000320580.9 ENST00000419755.3 downstream upstream mismatches(1) CTCCACCTCCATGGCCGTGGCGGTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCGGGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTGGACCGGAGCTCGTCCAGCTGCGTGCCTAG|CTGGTGGTAGGGGACCTTGGCCCTGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCACTGGTGATGACCGAAAGCCCGCTACCTGCTCTGCCAGCTGCTGCTGCCACCTTCCTCATGGAGCAACATGAGCCCCGGACCCCAGCTCTGGCACTTGCTTCAGGCCCTTGTGTC STSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPs|ww* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23867 PACS1::BBS1 ENSG00000175115.13::ENSG00000174483.20 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66070842:+ chr11:65837743-66012215:+ chr11:65838313:+ BBS1 ENSG00000174483.20 protein_coding + + chr11:66510606-66533613:+ chr11:66514406:+ chr11:66278077-66301084:+ chr11:66281877:+ chr11:66077327,chr11:66077293 chr11:66512736,chr11:66512699 NA NA chr11:65844798,chr11:65844764 chr11:66280207,chr11:66280170 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Ciliary_BBSome_complex_subunit_1(88%) |BBS1(77%),GlcNAc_2-epim(23%) 1 1 1 57 53 ENST00000320580.9 ENST00000526760.5 downstream upstream mismatches(1) CTCCACCTCCATGGCCGTGGCGGTGGCCTCGGGCTCCGCGCCTCCCGGTGGCCCGGGGCCAGGCCGCACCCCCGCCCCGGTGCAGATGAACCTGTACGCCACCTGGGAGGTGGACCGGAGCTCGTCCAGCTGCGTGCCTAG|CTGGTGGTAGGGGACCTTGGCCCTGGTGGGCAGCAGCCCCGCCTGAAGGTGCTCAAAGGACCACTGGTGATGACCGAAAGCCCGCTACCTGCTCTGCCAGCTGCTGCTGCCACCTTCCTCATGGAGCAACATGAGCCCCGGACCCCAGCTCTGGCACTTGCTTCAGGCCCTTGTGTC STSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPs|ww* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23868 PDE4B::FOXP2 ENSG00000184588.18::ENSG00000128573.28 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PDE4B ENSG00000184588.18 protein_coding + + chr1:65792514-66374579:+ chr1:65993142:+ chr1:66258197-66840262:+ chr1:66458825:+ FOXP2 ENSG00000128573.28 protein_coding + + chr7:114086327-114693772:+ chr7:114628540:+ chr7:113726382-114333827:+ chr7:114268595:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |FOXP_coiled-coil_domain(100%),Forkhead_domain(100%) |FOXP-CC(100%),Forkhead(100%) 1 0 1 48 1 ENST00000423207.6 ENST00000703612.1 downstream upstream none AGGAAACAGACCTACATCTCCTAAAATTTCTCCACGCAGTTCACCAAGGAACTCACCATGCTTTTTCAGAAAGTTGCTGGTGAATAAAAGCATTCGGCAGCGTCGTCGCTTCACTGTGGCTCATACATG|GTGCCTGTGTCAGTGGCCATGATGACTCCCCAGGTGATCACCCCTCAGCAAATGCAGCAGATCCTTCAGCAACAAGTCCTGTCTCCTCAGCAGCTACAAGCCCTTCTCCAACAAC GNRPTSPKISPRSSPRNSPCFFRKLLVNKSIRQRRRFTVAHTw|clcqwp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-3666 chr7:114653345-114653455:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23869 UQCC6::HSP90B1 ENSG00000204954.10::ENSG00000166598.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4051 TRUE 1527 UQCC6 ENSG00000204954.10 protein_coding - - chr12:103940763-103965708:- chr12:103956631:- chr12:104334541-104359486:- chr12:104350409:- HSP90B1 ENSG00000166598.16 protein_coding + + chr12:103930107-103953931:+ chr12:103939509:+ chr12:104323885-104347709:+ chr12:104333287:+ chr12:103953017,chr12:103953019 chr12:103938844,chr12:103938842 NA NA chr12:104346795,chr12:104346797 chr12:104332622,chr12:104332620 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Domain_of_unknown_function_(DUF4516)(76%)|Hsp90_protein(86%) DUF4516(2%)|HSP90(81%) 7 15 8 439 5135 ENST00000378090.9 ENST00000550595.2 upstream upstream mismatches(1) TAGACCTGTTGCCCAGCATCCCTGCAGTTCGCGGTACAGTCTCTAGTAGAGCGCGTGTATAGAGGCAGAGAGGAGTGAAGTCCACAGTTCCTCTCCTCCAAGAG___CCTGCCGACCATGCCCGCGGGCGTGCCCATGTCCACCTACCTGAAAATGTTCGCAGCCAGTCTCCTGGCCATGTGCGCAGGGGCAGAAGTGGTGCACAGGTACTACCGACCGGACCTG|GTTGAAAAAACTGTCTGGGACTGGGAACTTATGAATGATATCAAACCAATATGGCAGAGACCATCAAAAGAAGTAGAAGAAGATGAATACAAAGCTTTCTACAAATCATTTTCAAAG___GAAAGTGATGACCCCATGGCTTATATTCACTTTACTGCTGAAGGGGAAGTTACCTTCAAATCAATTTTATTTGTACCCACATCTGCTCCACGTG MPAGVPMSTYLKMFAASLLAMCAGAEVVHRYYRPDL|VEKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23870 UQCC6::HSP90B1 ENSG00000204954.10::ENSG00000166598.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4051 TRUE 1527 UQCC6 ENSG00000204954.10 protein_coding - - chr12:103940763-103965708:- chr12:103953414:- chr12:104334541-104359486:- chr12:104347192:- HSP90B1 ENSG00000166598.16 protein_coding + + chr12:103930107-103953931:+ chr12:103939509:+ chr12:104323885-104347709:+ chr12:104333287:+ chr12:103953017,chr12:103953019 chr12:103938844,chr12:103938842 NA NA chr12:104346795,chr12:104346797 chr12:104332622,chr12:104332620 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site inversion medium none Domain_of_unknown_function_(DUF4516)(78%)|Hsp90_protein(86%) DUF4516(64%)|HSP90(81%) 4 3 2 177 5135 ENST00000543740.6 ENST00000550595.2 upstream upstream none GTCTTTCGGTCGGAGAACTGGAAGGTCTGGGCAGAGTCGAGCAGAGGAGACCATGATGACTGCCTAGACTTGTGCTCAGTGCTGTGTTGGGGAGAACTGCTACAG|GTTGAAAAAACTGTCTGGGACTGGGAACTTATGAATGATATCAAACCAATATGGCAGAGACCATCAAAAGAAGTAGAAGAAGATGAATACAAAGCTTTCTACAAATCATTTTCAAAG___GAAAGTGATGACCCCATGGCTTATATTCACTTTACTGCTGAAGGGGAAGTTACCTTCAAATCAATTTTAT...GAACCTGTGGATGAATACTGTATTCAGGCCCTTCCCGAATTTGATGGGAAGAGGTTCCAGAATGTTGCCAAGGAAGGAGTGAAGTTCGATGAAAGTGAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23879 PUDP::STS ENSG00000130021.15::ENSG00000101846.9 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PUDP ENSG00000130021.15 protein_coding - - chrX:6667865-7148158:- chrX:7148053:- chrX:6585906-7066199:- chrX:7066094:- STS ENSG00000101846.9 protein_coding + - chrX:7147237-7804358:+ chrX:7175466:- chrX:7065278-7772399:+ chrX:7093507:- chrX:7117965 chrX:7181516 NA NA chrX:7036006 chrX:7099557 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Haloacid_dehalogenase-like_hydrolase(5%)| HAD_2(0%),Hydrolase(0%)| 0 9 1 252 16 ENST00000381077.10 unknown upstream downstream none CCCCCACCCAGACCCAGAAGGCGCCACCATGGCGGCGCCCCCGCAGCCCGTCACCCACCTCATCTTTGACATGGACGGACTTCTTCTGG|GCTGGAGTCCAGTGGCATGATCATGGCTCACTGCAGCCTCAACCTTCTGGCCTCAGGTTATCTTCCTACTTCAGCCTCCCAA___GATTGCAAACCTACATTTCTG...GA?ATATTGTGGGTTGCTGCATCCTAC MAAPPQPVTHLIFDMDGLLL|gwspva* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23885 DNAJB6::CFTR ENSG00000105993.15::ENSG00000001626.18 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157337144:+ chr7:157128075-157210133:+ chr7:157129838:+ CFTR ENSG00000001626.18 protein_coding + - chr7:117287120-117715971:+ chr7:117322381:- chr7:116927174-117356025:+ chr7:116962435:- chr7:157343764 chr7:117339272 NA NA chr7:157136458 chr7:116979326 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' medium none none none 4 2 0 1968 7 ENST00000262177.9 unknown downstream downstream multimappers(1) AGCCGCCGCCACCACCAGCGCAGCAGTCCTGGAGCTGTGAGGAGATTCGGGCCGTCACCCTGCCTCCCCTGCGTCCCGCCACCGGCCGCTTCTGTCCTCG|GTTCACCCCAGTGGGGCGGAAGAACATTTTGCTGCCTCCAGTTAGAGACTATGGCTTTAATGCAAAGCTACAGACCCCGGGGTCTGTCTCTAAGATGTTACCTTGTTCACAACCGTCCCCGCGAAGAGTAACTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23886 ITGB8::MACC1 ENSG00000105855.10::ENSG00000183742.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITGB8 ENSG00000105855.10 protein_coding + + chr7:20330702-20415754:+ chr7:20367186:+ chr7:20370325-20455377:+ chr7:20406809:+ MACC1 ENSG00000183742.13 protein_coding - + chr7:20134655-20217404:- chr7:20201632:+ chr7:20174278-20257027:- chr7:20241255:+ chr7:20372971,chr7:20372971 chr7:20196344,chr7:20196342 NA NA chr7:20412594,chr7:20412594 chr7:20235967,chr7:20235965 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Integrin_plexin_domain(100%)| PSI_integrin(100%)| 2 1 3 1988 156 ENST00000222573.5 unknown downstream upstream none GATGGTGTGTTCAAGAG___GATTTCATTTCAGGTGGATCAAGAAGTGAACGTTGTGATATTGTTTCCAATTTAATAAGCAAAGGCTGCTCAGTTGATTCAATAGAATACCCATCTGTGCATGTTATAATACCCACTGAAAATGAAATTAATACCCAGGTGACACCAGGAGAAGTGTCTATCCAGCTGCGTCCAG|GAAGGTGGAAAGCAAAAGTTGAAGCAGAACTAGAGACAAAGAGCAAGGGCAGTGGCCTGAACTAGGAAAGTGGTTGTAAGAATGGAGAGAAGTGGACAGAGTTCACCTTGTCCCTTGTTTTCGACTCCTAAACTCCAAGGATTATAAATT WCVQEDFISGGSRSERCDIVSNLISKGCSVDSIEYPSVHVIIPTENEINTQVTPGEVSIQLRP|grwkakveaeletkskgsgln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23892 DNAJB6::ENSG00000286390 ENSG00000105993.15::ENSG00000286390.1 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157337144:+ chr7:157128075-157210133:+ chr7:157129838:+ ENSG00000286390 ENSG00000286390.1 lncRNA - - chr7:117332761-117350096:- chr7:117333206:- chr7:116972815-116990150:- chr7:116973260:- chr7:157343764 chr7:117339272 NA NA chr7:157136458 chr7:116979326 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion medium none none none 1 2 0 1968 2 ENST00000262177.9 ENST00000667297.1 downstream downstream none CGCGAGGAGCCGCCGCCACCACCAGCGCAGCAGTCCTGGAGCTGTGAGGAGATTCGGGCCGTCACCCTGCCTCCCCTGCGTCCCGCCACCGGCCGCTTCTGTCCTCG|GTCCTGCAACTGCTTTGATGAGATCCAGGTGTAGTTCTTAACTAGTTTGG...CATCTTGGCATCCTACGCCACAAGTAAGAAGTCTAGGCCATGTAGAGGATGACAGCTGCAAGACATACGAGTTAAAAAGCCTCATGGGACCTCCAGCCCAG...CCACAGAACTATGAAATACAGTAATAAATTGATGTTTTGAAGTGCTAAGTTTTGGAGCGGTTTGTTATACAGCAATAGAAAACTGGAACAGCTATATATTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23895 PDE3B::COPB1 ENSG00000152270.9::ENSG00000129083.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE3B ENSG00000152270.9 protein_coding + + chr11:14643804-14872044:+ chr11:14645053:+ chr11:14665350-14893590:+ chr11:14666599:+ COPB1 ENSG00000129083.13 protein_coding - + chr11:14443440-14500027:- chr11:14474009:+ chr11:14464986-14521573:- chr11:14495555:+ chr11:14662752,chr11:14662751 chr11:14448045,chr11:14448041 NA NA chr11:14684298,chr11:14684297 chr11:14469591,chr11:14469587 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 0 1 2 41 2 ENST00000282096.9 unknown downstream upstream none CGCCTCTTCATCCTCGACTGTCCAGTGCCGCCGAAGAAAAAGTGCCTGTGATCCGACCCCGGAGGAGGTCCAGCTGCGTGTCGTTAGGAGAAACTGCAGCCAGTTACTATGGCAGTTGCAAAATATTCAGGAGACCGTCGTTGCCTTGTATTTCCAGAGAACAG|GTGCAGAAGCTGTGAATATGGAGG...AAGCAGGCATGAACTACAGATGAGAATAACTTAAGAGACATTCTGGGATAAAACAGACAATGACCGAATGGATGCAGATGCTGGAGAGAAGGACATTTCCT PLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRPSLPCISREQ|vqkl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23899 ADGRL3::SUCLA2 ENSG00000150471.17::ENSG00000136143.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4056 TRUE 1528 ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61813889:+ chr4:62066044-62944053:+ chr4:62679607:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47988981:- chr13:48319871-48612104:- chr13:48563116:- chr4:61880366,chr4:61880363,chr4:61880362 chr13:47997867,chr13:47997870,chr13:47997871 NA NA chr4:62746084,chr4:62746081,chr4:62746080 chr13:48572002,chr13:48572005,chr13:48572006 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none Galactose_binding_lectin_domain(100%),Olfactomedin-like_domain(100%)|ATP-grasp_domain(82%),CoA-ligase(100%) Gal_Lectin(100%),OLF(100%)|ATP-grasp_2(62%),ATP-grasp_5(81%),Ligase_CoA(100%) 1 0 1 11 319 ENST00000683033.1 ENST00000643584.1 downstream downstream none GCCTTTATGATTTGTGGAATTCTGTATGTGGTCAAATCTGTATATGAGGATGATGACAATGAGGCTACTGGAAATAAGATTGACTACATTTACAACACTGA...CAGGCACATCATGGACAAGTTTCATACATTTCTCCGCCAATTCACCTTGACTCTGAGCTAGAAAGACCCTCTGTTAAAG|GTTCAAAAGATGTCGTGATAAAGGCACAGGTTTTAGCTGGTGGTAGAGGAAAAGGAACATTTGAAAGTGGCCTCAAAGGAGGAGTGAAGATAGTTTTCTC QAHHGQVSYISPPIHLDSELERPSVK|gSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23900 ADGRL3::SUCLA2 ENSG00000150471.17::ENSG00000136143.16 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4056 TRUE 1528 ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61813889:+ chr4:62066044-62944053:+ chr4:62679607:+ SUCLA2 ENSG00000136143.16 protein_coding - - chr13:47745736-48037968:- chr13:47997023:- chr13:48319871-48612104:- chr13:48571158:- chr4:61880366,chr4:61880363,chr4:61880362 chr13:47997867,chr13:47997870,chr13:47997871 NA NA chr4:62746084,chr4:62746081,chr4:62746080 chr13:48572002,chr13:48572005,chr13:48572006 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Galactose_binding_lectin_domain(100%),Olfactomedin-like_domain(100%)|ATP-grasp_domain(100%),CoA-ligase(100%) Gal_Lectin(100%),OLF(100%)|ATP-grasp_2(87%),ATP-grasp_5(100%),Ligase_CoA(100%) 1 0 1 11 223 ENST00000683033.1 ENST00000643584.1 downstream downstream none CTTTATGTATGGAATAACTATCACGTCGTGAAATATTCTTTGGATTTTGGACCTCTGGATAGTAGATCAG___GGCAGGCACATCATGGACAAGTTTCATACAT...CCTCTGTTAAAG|GTTCTGGGAAGTTCTGGATTGTTTAATAACCATGGACTCCAAGTACAGCAGCAACAGCAAAGGAATCTCTCACTACATGAATACATGAG SVK|gsgkfwiv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23903 TCEANC::LINC01203 ENSG00000176896.9::ENSG00000226985.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4057 TRUE 1529 TCEANC ENSG00000176896.9 protein_coding + + chrX:13653112-13681964:+ chrX:13659768:+ chrX:13671231-13700083:+ chrX:13677887:+ LINC01203 ENSG00000226985.7 lncRNA + + chrX:13333952-13403035:+ chrX:13373517:+ chrX:13352071-13421154:+ chrX:13391636:+ chrX:13661747,chrX:13661735 chrX:13373388,chrX:13373376 NA NA chrX:13679866,chrX:13679854 chrX:13391507,chrX:13391495 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 1 23 428 ENST00000544987.3 ENST00000661545.1 downstream upstream mismatches(1) GGAGTATTGTGAGGATTGAGATGACTGGAGTGTGTGTGGCCTGGAGAGTTGCTCAATAAATATATGTTGCCTTCCACTGTGAAGAG___AGTCTCGCTCTGTCGCCAGGTTGGAGTGCAGTGGCATGATCTCGGCTCACaGCtAAC...CCGGGTTCAAGCAATTCTCCTGCCTCGGCCTTCCGAGTAGCTGGGACTACAG|TTTGGAACATCTGTTATTGCTGCTACTACGGTTTCTATCACTGTTTGATGCTGGGACTCTTAAGCTaCAACCACGTTTTCACCGAGCTGAGTCagCTTCTTATCtCCCCTTTCTG___GAGCAGCAGGACATCTGGG PGSSNSPASAFRVAGTT|vwnicyccyygfyhclmlgllsynhvftelsqllispfwssrts NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23904 TCEANC::LINC01203 ENSG00000176896.9::ENSG00000226985.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4057 TRUE 1529 TCEANC ENSG00000176896.9 protein_coding + + chrX:13653112-13681964:+ chrX:13655373:+ chrX:13671231-13700083:+ chrX:13673492:+ LINC01203 ENSG00000226985.7 lncRNA + + chrX:13333952-13403035:+ chrX:13373517:+ chrX:13352071-13421154:+ chrX:13391636:+ chrX:13661747,chrX:13661735 chrX:13373388,chrX:13373376 NA NA chrX:13679866,chrX:13679854 chrX:13391507,chrX:13391495 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 1 0 29 428 ENST00000696128.1 ENST00000661545.1 downstream upstream none GTTGCTCAATAAATATATGTTGCCTTCCACTGTGAAGAG|TTTGGAACATCTGTTATTGCTGCTACTACGGTTTCTATCACTGTTTGATGCTGGGACTCTTA...TAAGAGTGCTGTGGAAATACACTGCTGCTACTGCTGTTTCTATTACTGTTTGATGCTGGGACTCTTATGCTCCAACCACGTTTTCACCCAGCTGAGTCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23905 TCEANC::LINC01203 ENSG00000176896.9::ENSG00000226985.7 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4057 TRUE 1529 TCEANC ENSG00000176896.9 protein_coding + + chrX:13653112-13681964:+ chrX:13661122:+ chrX:13671231-13700083:+ chrX:13679241:+ LINC01203 ENSG00000226985.7 lncRNA + + chrX:13333952-13403035:+ chrX:13373517:+ chrX:13352071-13421154:+ chrX:13391636:+ chrX:13661747,chrX:13661735 chrX:13373388,chrX:13373376 NA NA chrX:13679866,chrX:13679854 chrX:13391507,chrX:13391495 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication low none none none 0 0 0 18 428 ENST00000696128.1 ENST00000661545.1 downstream upstream mismatches(1) CTGGGTCCCAGGACCACGTGCGCCGGCCTGTGGGCTTGGATTGGCTGAGCCTTGACGTTGTCCCAGTCCCGGgGATCGGAAGTTCTtCGTGGGCACTGGG...GGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG|TTTGGAACATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23909 TMEM164::AMMECR1 ENSG00000157600.12::ENSG00000101935.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM164 ENSG00000157600.12 protein_coding + + chrX:110002631-110182734:+ chrX:110067396:+ chrX:109245859-109425962:+ chrX:109310624:+ AMMECR1 ENSG00000101935.13 protein_coding - + chrX:110194186-110440318:- chrX:110269692:+ chrX:109437414-109683546:- chrX:109512920:+ chrX:110105976 chrX:110248155 NA NA chrX:109349204 chrX:109491383 NA NA sense antisense unknown CDS/splice-site intron deletion/read-through/5'-5' low none TMEM164_family(52%)| TMEM164(37%)| 2 1 3 100 7 ENST00000471255.5 unknown downstream upstream none GGGGAACCGAGCGCCCGGCGCGGAGAGCGCGGGAGCGGAGCAGTAGCCCGATCCGGGGCCGCGGGCCGAGCTGCCG___...GCTTTAAGTTCGCCACCAAGACCGTCATCTACCTGCTCAACCCCTGTCACCTGGTCACCATGATGCAT___ATCTTTCTCCTGGCCTGCCCTCCATGTCGGGGAGCTATCGTCGTCTTCAA|GATCTAGCAGCTTGCAGAAGTACAGAAATGATGATGTCTTCTTTCCACCACCAGGTgAAAA...GGCAGACAGTGCAGAATCACCAAACTG___GAAAAAAAAATGTGAGTGGCAAACCTAGGTGTCTTCTAAAAGACCAAAGAATAGGAAAATCCTATGAATACTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-652 chrX:110055329-110055426:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23942 ADNP2::PLIN3 ENSG00000101544.9::ENSG00000105355.9 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4063 FALSE NA ADNP2 ENSG00000101544.9 protein_coding + + chr18:80109262-80147523:+ chr18:80117650:+ chr18:77867146-77905406:+ chr18:77875533:+ PLIN3 ENSG00000105355.9 protein_coding - - chr19:4838341-4867694:- chr19:4852265:- chr19:4838353-4867706:- chr19:4852277:- chr18:80126141,chr18:80126140 chr19:4867665,chr19:4867666 NA NA chr18:77884024,chr18:77884023 chr19:4867677,chr19:4867678 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none |Perilipin_family(73%) ADNP_N(0%)|Apolipoprotein(1%),Perilipin(58%) 0 1 3 237 925 ENST00000262198.9 ENST00000592528.5 downstream downstream duplicates(1),mismatches(1) CCACGGGACGCGGCTGCGCTCGGCGGAAGACGCGGCAGCCCTGCGAGAGGCAGCAGaGGAGACcgGGTGCTtCTCGGGCGCCAAGCG___GcAAAaTTCAAAAATGTTTCAAATTCCTGTGGAAAATCTTGACAACATCAGAAAGGTGCGAAAAAAGGTGAAAGGTATTCTTGTGGATATTGGGCTTGACAGCTGCAAGGAGTTACTGAAG|GTGTCGGGGGCCCAAGAGATGGTGTCTAGCGCCAAGGACACGGTGGCCACCCAATTGTCGGAGGCGGTGGACGCGACCCGCGGTGCTGTGCAGAGCGGCGTGGACAAGACAAAGTCCGTAGTGACCGGCGGCGTCCAATCGGTCATGGGCTCCCGCTTGGGCCAGATGGTGcTGAGTGGGGTCGACACG MFQIPVENLDNIRKVRKKVKGILVDIGLDSCKELLK|VSGAQEMVSSAKDTVATQLSEAVDATRGAVQSGVDKTKSVVTGGVQSVMGSRLGQMVLSGVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23943 PCYT1A::RBFOX1 ENSG00000161217.12::ENSG00000078328.23 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2214 TRUE 4064 TRUE 1530 PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196247367:- chr3:195941093-196014828:- chr3:195974238:- RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6654603:+ chr16:5289803-7763342:+ chr16:6704604:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Cytidylyltransferase-like(64%)|Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) CTP_transf_like(2%)|Fox-1_C(100%),RRM_1(100%),RRM_5(100%) 32 42 39 987 120 ENST00000441879.5 ENST00000641259.1 upstream upstream duplicates(8),low_entropy(3),mismatches(2),multimappers(1) CTGATGCAAGCGAAGAACCTTTTCCCTAATACGTACCTCATTGTGGGAG___TTTGCAGTGATGAGCTCACACACAACTTCAAAGGCTTCACGGTGATGAACGAGAATGAGCGCTATGACGCAGTCCAGCACTGCCGCTACGTGGATGAGGTGGTGAGGAATGCGCCCTGGACGCTGACACCCGAGTTCCTGGCCGAACACCGG|GATATCAAAGCAGACTGCAATACCTGCGTGGAAATAGAAGACAGAAAG___GTTTCAAGACAACAGATGAATTGTGAAAGAGAGCAGCTAAGG___GGTAATCAGGAAGCAGCCGCTGCCCC LMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHR|DIKADCNTCVEIEDRKVSRQQMNCEREQLRGNQEAAAA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23944 PCYT1A::RBFOX1 ENSG00000161217.12::ENSG00000078328.23 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4064 TRUE 1530 PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196248207:- chr3:195941093-196014828:- chr3:195975078:- RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6654603:+ chr16:5289803-7763342:+ chr16:6704604:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Cytidylyltransferase-like(25%)|Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) CTP_transf_like(0%)|Fox-1_C(100%),RRM_1(100%),RRM_5(100%) 0 3 11 1265 120 ENST00000441879.5 ENST00000641259.1 upstream upstream mismappers(1) CTTACGGCAACCAGCTCCTTTTTCTGATGAAATTGAAGTTGACTTTAGTAAGCCCTATGTCAGGGTAACTATGGAAGAAGCCAGCAGAGGAACTCCTT___GTGAGCGACCTGTGAGAGTTTATGCCGATGGAATATTTGACTTATTTCACTCTGGTCACGCCCGAGCTCTGATGCAAGCGAAGAACCTTTTCCCTAATACGTACCTCATTGTGGGAG|GATATCAAAGCAGACTGCAATACCTGCGTGGAAATAGAAGACAGAAAG___GTTTCAAGACAACAGATGAATTGTGAAAGAG LRQPAPFSDEIEVDFSKPYVRVTMEEASRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVG|gyqsrlqylrgnrrqkgfkttdel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23945 PCYT1A::RBFOX1 ENSG00000161217.12::ENSG00000078328.23 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4064 TRUE 1530 PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196257788:- chr3:195941093-196014828:- chr3:195984659:- RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6654603:+ chr16:5289803-7763342:+ chr16:6704604:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |Calcitonin_gene-related_peptide_regulator_C_terminal(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |Fox-1_C(100%),RRM_1(100%),RRM_5(100%) 3 1 3 807 120 ENST00000441879.5 ENST00000641259.1 upstream upstream duplicates(1) CCCGGACCCAACGGGGCAACAGAAGAAGATGGGGTTCCTTCCAAAGTGCAGCGCTGTGCAGTG___GGCTTACGGCAACCAGCTCCTTTTTCTGATGAAATTGAAGTTGACTTTAGTAAGCCCTATGTCAGGGTAACTATGGAAGAAGCCAGCAGAGGAACTCCTT|GATATCAAAGCAGACTGCAATACCTGCGTGGAAATAGAAGACAGAAAG___CTTGAGTCAAAGGCTTATCCTGGAACTGGTTTCTGTGTTGGTGGATGGAATGATGATGTGGG...AGGCAGAAAAATGGTATACAGTGAAGAGTAATGCTTCCTCCAACCTCTGCCCCCAG___GTTTCAAGACAACAGATGAATTGTGAAAGAGAGCAG PGPNGATEEDGVPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVRVTMEEASRGTP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23948 CACNA2D1::SEMA3E ENSG00000153956.17::ENSG00000170381.15 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2216 FALSE NA FALSE NA CACNA2D1 ENSG00000153956.17 protein_coding - - chr7:81946444-82443956:- chr7:82335135:- chr7:81575760-82073272:- chr7:81964451:- SEMA3E ENSG00000170381.15 protein_coding - - chr7:83363238-83649139:- chr7:83469302:- chr7:82992554-83278455:- chr7:83098618:- chr7:82271740 chr7:83482590 NA NA chr7:81901056 chr7:83111906 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Immunoglobulin_domain(100%),Sema_domain(92%) |Ig_6(100%),Sema(78%),ig(100%) 14 27 13 71 45 ENST00000443883.2 ENST00000643230.2 upstream downstream duplicates(2),mismappers(1),mismatches(1) CCTTCGGCCGTCAC___TATCAAATCATGGGTGGATAAGATGCAAGAAGACCTTGTCACACTGGCAAAAACAGCAAGTGGAGTCAATCAGCTTGTTGAT___ATTTATGAGAAATATCAAGATTTGTATACTGTGGAACCAAATAATGCACGCCAGCTGGTAGAAATTGCAGCCAGGGATATTGAGAAACTTCTGAGCAACAGATCTAAAGCCCTGGTG|ATACACTGGCCGAGTACAGCTCTAAAAATGGAAGAATGCATAATGAAGGGAAAAGATGCG___GGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGGACACACCTTCTGACCTGTGGTACTGGAGCTTTTGATCCAGTTTGTGCCTTCATCAGAGTTGG PSAVTIKSWVDKMQEDLVTLAKTASGVNQLVDIYEKYQDLYTVEPNNARQLVEIAARDIEKLLSNRSKALV|IHWPSTALKMEECIMKGKDAGECANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23949 SDHAP4::ST6GAL1 ENSG00000214135.11::ENSG00000073849.16 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SDHAP4 ENSG00000214135.11 transcribed_unprocessed_pseudogene - - chr3:197619740-197627848:- chr3:197621704:- chr3:197346611-197354719:- chr3:197348575:- ST6GAL1 ENSG00000073849.16 protein_coding + - chr3:186930325-187078553:+ chr3:187029086:- chr3:186648114-186796341:+ chr3:186746874:- chr3:197621338 chr3:187033024 NA NA chr3:197348209 chr3:186750812 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 15 31 4 533 146 ENST00000454517.1 unknown upstream downstream duplicates(4),mismappers(5),mismatches(25) TGGAAAGGGCgGGCAGGCCCATgGGTGCTGCTGTGTGGCTGATCGGACCGGCCACTCAATATTGCACACCTCATATGGGAGG|AGACAAGGTCTTGCTTTGTCACCCAGGCTGGAGTACACAGTGGCACAATCTCTGTTCACCGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATCACAGGCGTGCACCACCACGCCCTGCTAACCACCTATGAAAAATTCTTGCCCAAAATGTTTAATCTGTATATTATCAAGCTGTCATACACAATTCCAGTTTTTAGGAAATACAGAAGAAAGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23950 SDHAP4::ST6GAL1 ENSG00000291091.1::ENSG00000073849.16 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SDHAP4 ENSG00000291091.1 lncRNA - - chr3:197578213-197627930:- chr3:197621704:- chr3:197305084-197354801:- chr3:197348575:- ST6GAL1 ENSG00000073849.16 protein_coding + - chr3:186930325-187078553:+ chr3:187029086:- chr3:186648114-186796341:+ chr3:186746874:- chr3:197621338 chr3:187033024 NA NA chr3:197348209 chr3:186750812 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 15 31 4 533 146 ENST00000701105.1 unknown upstream downstream duplicates(4),mismappers(5),mismatches(25) TGGAAAGGGCgGGCAGGCCCATgGGTGCTGCTGTGTGGCTGATCGGACCGGCCACTCAATATTGCACACCTCATATGGGAGG|AGACAAGGTCTTGCTTTGTCACCCAGGCTGGAGTACACAGTGGCACAATCTCTGTTCACCGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATCACAGGCGTGCACCACCACGCCCTGCTAACCACCTATGAAAAATTCTTGCCCAAAATGTTTAATCTGTATATTATCAAGCTGTCATACACAATTCCAGTTTTTAGGAAATACAGAAGAAAGAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23953 BRAF::ENSG00000228697 ENSG00000157764.14::ENSG00000228697.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4067 TRUE 1531 BRAF ENSG00000157764.14 protein_coding - - chr7:140719327-140924929:- chr7:140794308:- chr7:140419127-140624729:- chr7:140494108:- ENSG00000228697 ENSG00000228697.6 lncRNA - - chr1:168400829-168495692:- chr1:168402507:- chr1:168370067-168464930:- chr1:168371745:- chr7:140787979,chr7:140787981 chr1:168410682,chr1:168410681 NA NA chr7:140487779,chr7:140487781 chr1:168379920,chr1:168379919 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)| C1_1(100%),RBD(100%)| 10 6 15 235 28 ENST00000644969.2 ENST00000636459.1 upstream downstream duplicates(4),mismatches(3) CAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTATTGG___GCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGAACCTGTCAATATTGAT|ATCTCCCCGGCCCACAAAATACTTAAAAAGTAACCGGACTCTTTGTTCAGGGCTCAATCTTTTTGGATGTTAATCTGACTGGGCCGGTGCACCTAAATAATAAATAATATATATCCTCCTCGACCTTTGGTCTCTCTGATTCCTAAATTATCCTGCTGCACCAGGACTTATAGGAGCAGAAATCAGAAGACTTTACTCCACACACTTCAGGTGGACATGTGGACAAAGCCATCGGAGAACATGACAAAAATACAGCAAGAGCAGAGACAAGATCAGATC QEEASLAETALTSGSSPSAPASDSIGPQILTSPSPSKSIPIPQPFRPADEDHRNQFGQRDRSSSAPNVHINTIEPVNID|ispahkilkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase B-raf TKL RAF P15056 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf murine sarcoma viral oncogene homolog B1 1 Yes melanoma, colorectal, papillary thyroid, borderline ovarian, NSCLC, cholangiocarcinoma, pilocytic astrocytoma, Spitzoid tumour, pancreas acinar carcinoma, melanocytic nevus, prostate, gastric epithelial, other oncogene, fusion missense, translocation, other FALSE NA NA NA NA NA NA NA NA NA 23954 BRAF::ENSG00000228697 ENSG00000157764.14::ENSG00000228697.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4067 TRUE 1531 BRAF ENSG00000157764.14 protein_coding - - chr7:140719327-140924929:- chr7:140794308:- chr7:140419127-140624729:- chr7:140494108:- ENSG00000228697 ENSG00000228697.6 lncRNA - - chr1:168400829-168495692:- chr1:168407318:- chr1:168370067-168464930:- chr1:168376556:- chr7:140787979,chr7:140787981 chr1:168410682,chr1:168410681 NA NA chr7:140487779,chr7:140487781 chr1:168379920,chr1:168379919 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)| C1_1(100%),RBD(100%)| 8 2 18 235 14 ENST00000644969.2 ENST00000650143.1 upstream downstream duplicates(1),mismatches(2) AGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTATTGG___GCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGAACCTGTCAATATTGAT|AATGCTGAGTGCTCTGTATTTGTAATCCCATTGCTCCTATTGAGAAGTTAGCTGTTGGCCAAACTATTCCTACTTTCAAG EEASLAETALTSGSSPSAPASDSIGPQILTSPSPSKSIPIPQPFRPADEDHRNQFGQRDRSSSAPNVHINTIEPVNID|naecsvfvipllllrs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase B-raf TKL RAF P15056 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf murine sarcoma viral oncogene homolog B1 1 Yes melanoma, colorectal, papillary thyroid, borderline ovarian, NSCLC, cholangiocarcinoma, pilocytic astrocytoma, Spitzoid tumour, pancreas acinar carcinoma, melanocytic nevus, prostate, gastric epithelial, other oncogene, fusion missense, translocation, other FALSE NA NA NA NA NA NA NA NA NA 23955 BRAF::ENSG00000228697 ENSG00000157764.14::ENSG00000228697.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4067 TRUE 1531 BRAF ENSG00000157764.14 protein_coding - - chr7:140719327-140924929:- chr7:140794308:- chr7:140419127-140624729:- chr7:140494108:- ENSG00000228697 ENSG00000228697.6 lncRNA - - chr1:168400829-168495692:- chr1:168402343:- chr1:168370067-168464930:- chr1:168371581:- chr7:140787979,chr7:140787981 chr1:168410682,chr1:168410681 NA NA chr7:140487779,chr7:140487781 chr1:168379920,chr1:168379919 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)| C1_1(100%),RBD(100%)| 2 1 4 235 48 ENST00000644969.2 ENST00000636459.1 upstream downstream duplicates(1),mismatches(1) CAGCGTTGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGA___TTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTATTGG___GCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGAACCTGTCAATATTGAT|GACTTATAGGAGCAGAAATCAGAAGACTTTACTCCACACACTTCAGGTGGACATGTGGACAAAGCCATCGGAGAACATGACAAAAATACAGCAAGAGCAGAGACAAGATCAGATCATCCTGGGGGCAGATGCTGGGCTCTGACCAATTTGAGAGAGAAAAGGAAAAAGAACCCAGCTACAAG QRCSTEVPLMCVNYDQLDLLFVSKFFEHHPIPQEEASLAETALTSGSSPSAPASDSIGPQILTSPSPSKSIPIPQPFRPADEDHRNQFGQRDRSSSAPNVHINTIEPVNID|dl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase B-raf TKL RAF P15056 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf murine sarcoma viral oncogene homolog B1 1 Yes melanoma, colorectal, papillary thyroid, borderline ovarian, NSCLC, cholangiocarcinoma, pilocytic astrocytoma, Spitzoid tumour, pancreas acinar carcinoma, melanocytic nevus, prostate, gastric epithelial, other oncogene, fusion missense, translocation, other FALSE NA NA NA NA NA NA NA NA NA 23963 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2220 TRUE 4070 TRUE 1532 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19751271:- chr13:20248892-20357159:- chr13:20325411:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19838985:- chr13:20397622-20437789:- chr13:20413125:- chr13:19749331,chr13:19749333 chr13:19847113,chr13:19847112 NA NA chr13:20323471,chr13:20323473 chr13:20421253,chr13:20421252 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) NOPS(100%),RRM_1(100%)|zf-FCS(100%) 2 6 12 900 57 ENST00000471658.5 ENST00000337963.9 upstream downstream none GGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA___GGAAAGAGAACAACCACCACGTTTTGCTCAACCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGGCAAG|ATTCTTGGATCTCCCAGTCAGCTTCATTTCCCAGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTTACTTCGTAAGCAGAATTTCCAGCCTACAGCCCAACAACAACTTACTAAACCAGCTAAAATCACTTGTGCAAATTGCAAAAAGCCTTTACAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGCTCTACCACCTGCCTTTCTTCCTTCTCTC EPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQ|dSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23964 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2221 TRUE 4070 TRUE 1532 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19751271:- chr13:20248892-20357159:- chr13:20325411:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19837821:- chr13:20397622-20437789:- chr13:20411961:- chr13:19749331,chr13:19749333 chr13:19847113,chr13:19847112 NA NA chr13:20323471,chr13:20323473 chr13:20421253,chr13:20421252 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|MYM-type_Zinc_finger_with_FCS_sequence_motif(68%) NOPS(100%),RRM_1(100%)|zf-FCS(95%) 3 7 9 900 92 ENST00000471658.5 ENST00000382907.8 upstream downstream duplicates(1) GGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA___GGAAAGAGAACAACCACCACGTTTTGCTCAACCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGGCAAG|AGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAGGTCTGGATTTTTATACCTAAGTTGTTGTTTAGGCTAACAGTGA EPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQ|eMHLQRRLMSFFQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23965 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4070 TRUE 1532 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19751271:- chr13:20248892-20357159:- chr13:20325411:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19835689:- chr13:20397622-20437789:- chr13:20409829:- chr13:19749331,chr13:19749333 chr13:19847113,chr13:19847112 NA NA chr13:20323471,chr13:20323473 chr13:20421253,chr13:20421252 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|MYM-type_Zinc_finger_with_FCS_sequence_motif(56%) NOPS(100%),RRM_1(100%)|zf-FCS(5%) 2 2 3 900 56 ENST00000471658.5 ENST00000337963.9 upstream downstream none TGTTGTGGTTGTGGATGATCGCGGTAGAGCTACAGGAAAAGGTTTTGTAGAGTTTGCAGCAAAACCTCCTGCACGAAAGGCTCTGGAAAGATGTGGTGATG...CTCGTCCAGTCATTGTGGAACCCATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTGATGCAGAAAACTCAACAATATCATAA___GGAAAGAGAACAACCACCACGTTTTGCTCAACCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAATTAATGCTAATGAGGCAAG|ATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGA...TTAACGAATATAAACAGGTAATTCTTTTTCATGAGCTTTAAATGATCAAATATATAGTAGCTTCACCCTTACATCTTACATGAACCGGATTTATCTTAGAA RPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQ|dsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23966 MOV10L1::PARVB ENSG00000073146.17::ENSG00000188677.15 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MOV10L1 ENSG00000073146.17 protein_coding + + chr22:50090006-50161690:+ chr22:50153218:+ chr22:50528435-50600119:+ chr22:50591647:+ PARVB ENSG00000188677.15 protein_coding + - chr22:43999211-44172939:+ chr22:44037699:- chr22:44395091-44568819:+ chr22:44433579:- chr22:50154150 chr22:44038052 NA NA chr22:50592579 chr22:44433932 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none AAA_domain(68%)| AAA_11(100%),AAA_12(31%),AAA_30(100%)| 5 8 5 25 20 ENST00000262794.10 unknown downstream downstream duplicates(1),mismatches(1) AAAGCTGGTGAAGAACTACCGGTCCCACGAGGCCCTGCTGATGCTGCCCTCACGGCTGTTCTACCACAGGGAACTCGAGGTCTGTGCGGACCCCACAGTGGTGACCTCCTTGCTGGGCTGGGAGAAGTTGCCTAAGAAAGGCTTCCCTCTCATCTTCCATGGTGTGCGG|TTTAAGCAGGGTCAGCGGCAATGAAGAGCCACACTGCCTGGAGTTAAATCTCACCTGCTGGCAGGATGACCTCGATCCTCTCTAAGCCTGTGTTTGCCCATCTGCAAAATGGGAATAACCACATAACACCGACTTCCCAGCTTGGTGTGAGGAGTAAACA...TTTTGTTTTTAATCTTCCTTTAACTTTTACCCTCACTTCTCAGATTATCTTTATTATGATTATTATTTTGATGCAGGGCCTCACTCTGTCACACAGCTGCA KLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGFPLIFHGVR|fkqgqrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23967 ROCK2::LINC00276 ENSG00000134318.16::ENSG00000230448.5 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4071 TRUE 1533 ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11286539:- chr2:11319885-11488456:- chr2:11426665:- LINC00276 ENSG00000230448.5 lncRNA - - chr2:13710531-14400963:- chr2:14317103:- chr2:13850656-14541087:- chr2:14457227:- chr2:11277719,chr2:11277721 chr2:14334170,chr2:14334169 NA NA chr2:11417845,chr2:11417847 chr2:14474294,chr2:14474293 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 4 7 6 97 6 ENST00000315872.11 ENST00000417751.5 upstream downstream duplicates(1),multimappers(1) GAGGAAAAACAAGAACATAGATAATTTCTTAAATAGAT___ATGAGAAAATTGTGAAAAAAATCAGAGGTCTACAGATGAAGGCAGAAGACTATGATGTTGTAAAAGTTATTGGAAGAGGTGCTTTTGGTGAAGTGCAGTTG|ACTCATTTCCTTCTCTAGAAAGCAATGAAACAAGAATCTGGTCATGGGATTTTACCAGTGCAAAGGATTAATCCACCCAATTGATGGCCAAGAAACCAACCAGTGAGAGCAGGAAGCAAGAACACCTCGAGACAG___GACA RKNKNIDNFLNRYEKIVKKIRGLQMKAEDYDVVKVIGRGAFGEVQL|thfll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23968 ROCK2::LINC00276 ENSG00000134318.16::ENSG00000230448.5 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4071 TRUE 1533 ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11286539:- chr2:11319885-11488456:- chr2:11426665:- LINC00276 ENSG00000230448.5 lncRNA - - chr2:13710531-14400963:- chr2:13841614:- chr2:13850656-14541087:- chr2:13981739:- chr2:11277719,chr2:11277721 chr2:14334170,chr2:14334169 NA NA chr2:11417845,chr2:11417847 chr2:14474294,chr2:14474293 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Protein_kinase_domain(6%)| PK_Tyr_Ser-Thr(0%),Pkinase(0%)| 3 0 0 97 7 ENST00000315872.11 ENST00000417751.5 upstream downstream none GCGAGGAGCCTGAGTGCGGGTCCAGCGGTGGCGGCATGAGCCGGCCCCCGCCGACGGGGAAAATGCCCGGCGCCCCCGAGACCGCGCCGGGGGACGGGGCA...GGCGCTGATCCGAGACCCTCGCTCCCCCATCAACGTGGAGAGCTTGCTG___GATGGCTTAAATTCCTTGGTCCTTGATTTAGATTTTCCTGCTTTGAGGAAAA...AAAAAATCAGAGGTCTACAGATGAAGGCAGAAGACTATGATGTTGTAAAAGTTATTGGAAGAGGTGCTTTTGGTGAAGTGCAGTTG|GACAGTGAGCTGGACAACATTGCTTCATTATTTCAGCTGCTTGTGAAGGAGGacAGT KIRGLQMKAEDYDVVKVIGRGAFGEVQL|dseldniaslfqllvked NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23969 PANX2::MOV10L1 ENSG00000073150.14::ENSG00000073146.17 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2222 FALSE NA FALSE NA PANX2 ENSG00000073150.14 protein_coding + + chr22:50170731-50180295:+ chr22:50170956:+ chr22:50609160-50618724:+ chr22:50609385:+ MOV10L1 ENSG00000073146.17 protein_coding + + chr22:50090006-50161690:+ chr22:50153045:+ chr22:50528435-50600119:+ chr22:50591474:+ chr22:50178371,chr22:50178370 chr22:50151468,chr22:50151464 NA NA chr22:50616800,chr22:50616799 chr22:50589897,chr22:50589893 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Innexin(12%)|AAA_domain(46%) Innexin(1%)|AAA_12(69%) 11 2 4 313 29 ENST00000395842.3 ENST00000262794.10 downstream upstream inconsistently_clipped(1),mismatches(1) GCGACCGCGCTGCTGGCGGGAGAGAAGCTGCGGGAGCTGATCCTGCCGGGCGCGCAGGACGACAAGGCGGGCGCGCTGGCCGCGCTGCTTCTGCAGCTGAAGCTGGAGCTGCCGTTCGACCGGGTGGTCACCATCGGCACCGTGCTGGTGCCCATCCTGCTGGTCACCCTGGTCTTCACCAAGAACTTCGCAG|GTCACAAAGCTGGTGAAGAACTACCGGTCCCACGAGGCCCTGCTGATGCTGCCCTCACGGCTGTTCTACCACAGGGAACTCGAGGTCTGTGCGGACCCCACAGTGGTGACCTCCTTGCTGGGCTGGGAGAAG ATALLAGEKLRELILPGAQDDKAGALAALLLQLKLELPFDRVVTIGTVLVPILLVTLVFTKNFA|ghkageelpvprgpadaaltavlpqgtrglcgphsgdllaglge NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23970 NBAS::ENSG00000225649 ENSG00000151779.14::ENSG00000225649.7 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15287073:- chr2:15307040-15701464:- chr2:15427197:- ENSG00000225649 ENSG00000225649.7 lncRNA - - chr2:12780593-13007029:- chr2:12784737:- chr2:12920719-13147154:- chr2:12924863:- chr2:15282599,chr2:15282599,chr2:15282602 chr2:12799578,chr2:12799575,chr2:12799580 NA NA chr2:15422723,chr2:15422723,chr2:15422726 chr2:12939704,chr2:12939701,chr2:12939706 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(100%)| Nbas_N(100%),Sec39(100%)| 4 3 9 106 13 ENST00000281513.10 ENST00000663507.1 upstream downstream duplicates(1) GTGCCATCCTCTTTACAGG___GCTGATCCCAAAGAACTAATCAAGATGGTCACCAGGCATGTGACTCGACATGAGCACGAAGCCTGGCCTGAAGACCTTATTT...CAGGGCCTTCGGAAGGGTGTGGACGTGCAGCGGTTTACTGCAGATGACCAGTATAAAAGGGAAACTATCCTTGGTCTGGCAGA___AACTCTAGAGGAAAGCGTCTACAGCATTGCTATTTCTCTGGCACAACGTTACAGTGTCTCCCGCTGGGAAGTTTTTATGACCCATTTGGAGTTCCTCTTCACGGACAGTGG|ATGCCAACACAAGTGCTGAAGAGGATGTTACATGAGAGAAAGATGGATTCATATGTGGAAAAGCCTTCTAAGGATAAAGTCTACCATATACTGACTTACTTTTGGAG___...GGTTGGTGAG...ACGAGGAGGTCAGTCTCTTAAACTTCAAGTGGAAAACAGATGAGATTAGGTGACTGTGCTGAATTTGAAATATGTGCCCTAATCCCAAT...___CCCTATAGTTCAGCAATATTCTGGAATTCCAG QGLRKGVDVQRFTADDQYKRETILGLAETLEESVYSIAISLAQRYSVSRWEVFMTHLEFLFTDSg|cqhkc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23974 PPP2CB::TEX15 ENSG00000104695.13::ENSG00000133863.9 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30786211:- chr8:30631973-30671830:- chr8:30643727:- TEX15 ENSG00000133863.9 protein_coding - - chr8:30831544-30913008:- chr8:30839964:- chr8:30689060-30770524:- chr8:30697480:- NA NA NA NA NA NA NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site duplication high none Calcineurin-like_phosphoesterase(100%)| Metallophos(100%)| 3 4 1 287 26 ENST00000221138.9 ENST00000643185.2 upstream downstream duplicates(3) GTCTCACACTGGTTTCTCGTGCCCACCAGCTTGTAATGGAG___GGtTACAATTGGgGTCATGATCGGAATGTGGTTACCATTTTCAGTGCACCCAATTACTGTTATCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGACACTTTAAAATATTCCTT___CCTTCAATTTGACCCAGCGCCTCGTCGTGGTGAGCCTCATGTTACACGGCGCACCCCAGACTACTTCCTATAAATTTCTCCTGGGAAACCTGCCTTT|GTAGACATGAAAGATGTCACAAAAATCAACAGAGAAAAGGCAACATTCAAGCATCCAAG___GACTACAGGATCTCATCCCAAAAGCGAAAACAAAATAGTACCAAGTTCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23976 NAPB::LINC01721 ENSG00000125814.17::ENSG00000230133.2 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAPB ENSG00000125814.17 protein_coding - - chr20:23374519-23421519:- chr20:23389946:- chr20:23355156-23402156:- chr20:23370583:- LINC01721 ENSG00000230133.2 lncRNA + - chr20:24063255-24226013:+ chr20:24145380:- chr20:24043892-24206649:+ chr20:24126016:- chr20:23385295 chr20:24146173 NA NA chr20:23365932 chr20:24126809 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Soluble_NSF_attachment_protein__SNAP(64%)| NSF(100%),SNAP(71%)| 2 0 5 68 5 ENST00000398425.7 unknown upstream downstream duplicates(1) GGGGAAGGAGCGTGAGGCAGTACAGCTGATGGCGGAGGCCGAGAAGCGAGTCAAGGCCTCCCACTCCTTCCTCCGAGGGCTGTTTGG___AGGAAACACAAGAA...GGCTATTGCACATTATGAACAATCTGCTGATTATTACAAAGGAGAAGAATCCAACAG___CTCAGCAAACAAGTGTCTGCTGAAGGTGGCAGCATATGCTGCCCAGCTTGAGCAGTACCAGAAAGCCATTGAGATCTATGAGCAG|AGATGGGGGAAGTCTTACTACATTGCCCAAGCTGGCCTTAAACTCA...CCAAGTAGCTGGGACTCCTACAGCACCTGGCTTGCCGTATTGTAAGAACCCAACAGACAGAAATAAAG___GTTAAAATCAACCTGTCAAATCTCATGAAAAAC AIAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQ|rwgksyyiaqaglkl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23977 NEK6::AFP ENSG00000119408.17::ENSG00000081051.8 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NEK6 ENSG00000119408.17 protein_coding + + chr9:124257606-124353307:+ chr9:124258085:+ chr9:127019885-127115586:+ chr9:127020364:+ AFP ENSG00000081051.8 protein_coding + + chr4:73431138-73456174:+ chr4:73455236:+ chr4:74296855-74321891:+ chr4:74320953:+ chr9:124276685,chr9:124276681 chr4:73454699,chr4:73454688 NA NA chr9:127038964,chr9:127038960 chr4:74320416,chr4:74320405 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 1 5 0 16 19 ENST00000320246.10 ENST00000395792.7 downstream upstream duplicates(1) GCGGAACCGAGCTGACGGGCGTGCGGCCGCTGCGCCGCAAACTCGTGTGGGACGCACCGCTCCAGCCGCCCGCGGGCCAGCGCACCGGTCCCCCAGCGGCAGCCGAGCCCGCCCGCGCGCCG|GGACAAAAACTGATTTCAAAAACTCGTGCTGCTTTGGGAGTTTAAATTACTTCAG___AGAACTTCAATAGTACTCAAAAATTT...ACAT___CACCATCATTGCATTTGCTCAGTATGTTCAGGAAGCAACCTTTGAAGAAATGGAAAAGCTGGTGAAAGACATGGTAGAATACAAAGACAGATGTATGGCTGACAAGACGCTCCCAGAGTGTTCAAAATTACCT___CTATTTAGGACACTTTGGCTGGAGGATCACTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek6 Other NEK Q9HC98 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23978 LPP::WDR49 ENSG00000145012.15::ENSG00000174776.12 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188760282:+ chr3:187871072-188608460:+ chr3:188478070:+ WDR49 ENSG00000174776.12 protein_coding - + chr3:167478684-167653983:- chr3:167650406:+ chr3:167196472-167371771:- chr3:167368194:+ chr3:188822432,chr3:188822433 chr3:167647880,chr3:167647878 NA NA chr3:188540220,chr3:188540221 chr3:167365668,chr3:167365666 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none LIM_domain(31%)| LIM(0%)| 4 1 1 95 3 ENST00000414139.6 unknown downstream upstream none CAGAGGATGAGCTTGAGCACCTGACCAAAAAGATGCTGTATGACATGGAAAATCCACCTGCTGACGAATACTTTG___GCCGCTGTGCTCGCTGTGGAGAAAACGTAGTTGGGGAAGGTACAGGATGCACTGCCATGGATCAGGTCTTCCACGTGGATTGTTTTACCTGCATCATCTGCAACAACAAGCTCCGAGGGCAGCCATTCTATGCTGTGGAAAAGAAAGCATACTGCGAGCCCTGCTACATT|GCTGATATATGGCTCTTTTGACACCATCACTTAAAGGAAAATGAAATCCACAAGTTACTTTTCTGTGCTTCTACCCAG___GATTTACAAAATGAGTGGGAGACTCGTCCCTCATAAGGGATCTTGGGACAACAAAGTGCCAGAATCAGCTTAGAAAAGGAG EDELEHLTKKMLYDMENPPADEYFGRCARCGENVVGEGTGCTAMDQVFHVDCFTCIICNNKLRGQPFYAVEKKAYCEPCYI|adiwlf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-28 chr3:188688781-188688866:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 23979 ZNF227::ZNF595 ENSG00000131115.16::ENSG00000272602.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4073 TRUE 1534 ZNF227 ENSG00000131115.16 protein_coding + + chr19:44207547-44237268:+ chr19:44228572:+ chr19:44711700-44741421:+ chr19:44732725:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:67840:+ chr4:53180-88096:+ chr4:67732:+ chr19:44229096,chr19:44229087 chr4:61965,chr4:61953 NA NA chr19:44733249,chr19:44733240 chr4:61857,chr4:61845 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none KRAB_box(98%)|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) KRAB(1%)|zf-C2H2(100%),zf-C2H2_6(100%),zf-C2HC_2(100%) 2 2 2 169 71 ENST00000621083.4 ENST00000509152.3 downstream upstream mismatches(2) TGTTTACCGCCGTTTATCCGGGATAGAGACTCCATCGTGCTGACAGCATCCTTTTATTCACCGCCTCCGAATTTGCAAAGAGGAGGAAGGAGGGACTTCTT...CTCAGAACTATGACCTTCCCCAGAAGAAGCAGGAGAAAATGACCAAGTTTCAG___GAGGCTGTGACATTCAAGGATGTGGCTGTGGTCTTCTCCAGGGAGGAACTGCGACTGCTgGATCTTACCCAGAGGAAGCTGTACCGAGATGTCATGGTGGAGAACTTCAAGAACCTGGTTGCAGTGG|TTGTTCAGCACTTCTGGTCTCTTCAGTTCTGATATGATTTTAGGATTGCTTCTTTTTTTTTTTTTGAGGCGGAGTGGAGTGCAGTGGCGCCATCTCGTTTCATTGCAAGTTCCGCCTCCCATGTTCACACCATTGTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTAGTAGAGAC...TATGTTAATGCGAAATATGCATAGCTGTCATCCGAAGTATACCACCATTCCCTTCAGCACTCTACGTCAGAGGAGGCACGTCAGGGGAGACAAAATTCCTC QNYDLPQKKQEKMTKFQEAVTFKDVAVVFSREELRLLDLTQRKLYRDVMVENFKNLVAV|vVQHFWSLQF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23980 ZNF227::ZNF595 ENSG00000131115.16::ENSG00000272602.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4073 TRUE 1534 ZNF227 ENSG00000131115.16 protein_coding + + chr19:44207547-44237268:+ chr19:44217852:+ chr19:44711700-44741421:+ chr19:44722005:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:67840:+ chr4:53180-88096:+ chr4:67732:+ chr19:44229096,chr19:44229087 chr4:61965,chr4:61953 NA NA chr19:44733249,chr19:44733240 chr4:61857,chr4:61845 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_6(100%),zf-C2HC_2(100%) 0 1 0 113 71 ENST00000621083.4 ENST00000509152.3 downstream upstream none AGAAGAAGCAGGAGAAAATGACCAAGTTTCAG|TTGTTCAGCACTTCTGGTCTCTTCAGTTCTGATATGATTTTAGGATTGCTTCTTTTTTTTTTTTTGAGGCGGAGTGGAGTGCAGTGGCGCCATCTCGTTTCATTGCAAGTTCCGCCTCCCATGTTCACACCATTGTCCTG KKQEKMTKFQ|lfstsglfssdmilglllffflrrsgvqwrhlvslqvpppmftpls NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23985 RIOX2::ENSG00000251088 ENSG00000170854.18::ENSG00000251088.1 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RIOX2 ENSG00000170854.18 protein_coding - - chr3:97941818-97972457:- chr3:97961589:- chr3:97660662-97691301:- chr3:97680433:- ENSG00000251088 ENSG00000251088.1 lncRNA + - chr3:98233651-98457898:+ chr3:98322568:- chr3:97952495-98176742:+ chr3:98041412:- chr3:97960995 chr3:98326620 NA NA chr3:97679839 chr3:98045464 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none JmjC_domain(42%)| Cupin_4(29%)| 0 2 3 275 6 ENST00000333396.11 unknown upstream downstream low_entropy(1) GAGAAAAGATTTTGATCAGAAAAGGGCAACGATTCAGTTTCACCAACCTCAGAGATTTAAG___GATGAGCTTTGGAGGATCCAGGAGAAGCTGGAATGTTACTTTGGCTCCTTGGTTGGCTCGAATGTGTACATAACTCCCGCAGGATCTCAGGGCCTGCCGCCCCATTATGATGATGTCGAG|ATTTTGCTAGTAAAAGACAAAGAAGCAGAAGAAAATAATAAAGAGGAGTCAGTGTGAAACCTCTGCGGAAGTGTGGAGTAAGCAGCGTGATGTGCAGAgGTAGCTTT RKDFDQKRATIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVE|illvkdkeaeennkeesv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23989 LRP1B::FYB1 ENSG00000168702.18::ENSG00000082074.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRP1B ENSG00000168702.18 protein_coding - - chr2:140231423-142131016:- chr2:141480396:- chr2:140988992-142888585:- chr2:142237965:- FYB1 ENSG00000082074.19 protein_coding - - chr5:39105252-39274528:- chr5:39153604:- chr5:39105354-39274630:- chr5:39153706:- chr2:141440616,chr2:141433698,chr2:141433674,chr2:141433689,chr2:141440625 chr5:39196336,chr5:39195501,chr5:39195501,chr5:39195501,chr5:39196342 NA NA chr2:142198185,chr2:142191267,chr2:142191243,chr2:142191258,chr2:142198194 chr5:39196438,chr5:39195603,chr5:39195603,chr5:39195603,chr5:39196444 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Low-density_lipoprotein_receptor_domain_class_A(6%)|Helically-extended_SH3_domain(100%),Variant_SH3_domain(100%) Ldl_recept_a(95%)|SH3_2(100%),hSH3(100%) 0 2 1 3 3 ENST00000389484.8 ENST00000646045.2 upstream downstream none CTTGAATCACATTGCTTGCCTTGGTACCAACAAATGTGTTCATTTATCCCAGCTGTGCAATGGTGTCTTGGACTGCCCAGATGGGTATGACGAAGGAGTACATTGTCAGG|GTACTAGCAAAGGCCAGACGTCTTACTCAACAACTTCCCTGCCACCACCTCCACCATCCCATCCGGCCAGCCAACCACCATTGCCAGCATCTCACCCATCACAACCACCAGTCCCAAGCCTACCTCCCAG LNHIACLGTNKCVHLSQLCNGVLDCPDGYDEGVHCQ|gTSKGQTSYSTTSLPPPPPSHPASQPPLPASHPSQPPVPSLPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LDL receptor related protein 1B 1 Yes CLL, ovarian cancer, oesophageal squamous cell carcinoma, urothelial cancer epithelial, leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 23991 FSCN2::XAF1 ENSG00000186765.12::ENSG00000132530.17 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FSCN2 ENSG00000186765.12 protein_coding + + chr17:81528377-81537130:+ chr17:81535208:+ chr17:79495403-79504156:+ chr17:79502234:+ XAF1 ENSG00000132530.17 protein_coding + - chr17:6755447-6775647:+ chr17:6759763:- chr17:6658766-6678966:+ chr17:6663082:- chr17:81535851,chr17:81535849 chr17:6761252,chr17:6761253 NA NA chr17:79502877,chr17:79502875 chr17:6664571,chr17:6664572 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Fascin_domain(65%)| Fascin(77%)| 0 1 2 26 6 ENST00000417245.7 unknown downstream downstream none CAACGTCTCAGCCAATCAGGATGATGAACTAGACCACGAGACCTTCCTGATGCAAATTGACCAGGAGACAAAGAAGTGCACCTTCTATTCCAGCACTGGGG...CTGGACCCTGGTCACCCATGGGGGCATTCACGCCACAGCCACACAAGT|GTTGGTCTATTTGGCTGTAAAGGAGAAATCACATGGGGCTCTTACCTTATGAA...TTGGCTCACAGTGTTCCGGGTTTGGGTCTGTGAACTCCCAGAGGGCAGGGATCCGATGTGGCTACCTCAGTGTCTCTCTAGCACCCCGCCCAGTGTTCAAG WTLVTHGGIHATATQv|lvylavkekshgaltl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 23992 IGF2BP2::LPP ENSG00000073792.16::ENSG00000145012.15 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4075 TRUE 1535 IGF2BP2 ENSG00000073792.16 protein_coding - - chr3:185643130-185825042:- chr3:185823153:- chr3:185360918-185542830:- chr3:185540941:- LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188609161:+ chr3:187871072-188608460:+ chr3:188326949:+ chr3:185759950,chr3:185759952 chr3:188606452,chr3:188606450 NA NA chr3:185477738,chr3:185477740 chr3:188324240,chr3:188324238 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(45%)|LIM_domain(100%) RRM_1(6%)|LIM(100%) 2 1 0 304 81 ENST00000382199.7 ENST00000414139.6 upstream upstream duplicates(1),multimappers(1) GCTTTACATCGGGAACCTGAGCCCCGCCGTCACCGCCGAgGACCTCCGGCAGCTCTTTGGGGACAGGAAGCTGCCCCTGGCGGGACAGGTCCTGCTGAAG...CTCGG___GTAAAGTGGAATTGCATGGGAAAATCATGGAAGTTGATTACTCAGTCTCTAAAAAGCTAAG|AGCTCCACTGGTTCAACAGCCTCTCCTCCAGTTTCGACCCCAGTCACAGGACACAAGAGAATGGTCATCCCGAACCAACCCCCTCTAACAG...GGTGAAGTCAGCCCAGCCCAGCCCTCATTATATGGCTGCCCCTTCATCAGGACAAATTTATGGCTCAGGtCCCCAGGGCTATAACACTCAGCCAGTTCCTG SGKVELHGKIMEVDYSVSKKLr|aplvqqpllqfrpqsqdtrewssrtnpl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-28 chr3:188688781-188688866:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE insulin like growth factor 2 mRNA binding protein 2 2 lymphoma leukaemia_lymphoma TSG large_deletion TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 23993 IGF2BP2::LPP ENSG00000073792.16::ENSG00000145012.15 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4075 TRUE 1535 IGF2BP2 ENSG00000073792.16 protein_coding - - chr3:185643130-185825042:- chr3:185824783:- chr3:185360918-185542830:- chr3:185542571:- LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188609161:+ chr3:187871072-188608460:+ chr3:188326949:+ chr3:185759950,chr3:185759952 chr3:188606452,chr3:188606450 NA NA chr3:185477738,chr3:185477740 chr3:188324240,chr3:188324238 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(43%)|LIM_domain(100%) RRM_1(0%)|LIM(100%) 1 0 0 402 81 ENST00000382199.7 ENST00000414139.6 upstream upstream none GCGGGCTCTCGGGGAAGAGACGGATGATGAACAAGCTTTACATCGGGAACCTGAGCCCCGCCGTCACCGCCGACGACCTCCGGCAGCTCTTTGGGGACAGG...GCCATCCGCGCCATCGAGACCCTCTCGG|AGCTCCACTGGTTCAACAGCCTCTCCTCCAGTTTCGACCCCAGTCACAGGACACAAGAGAATGGTCATCCCGA AIRAIETLS|elhwfnslsssfdpshrtqenghp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-28 chr3:188688781-188688866:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE insulin like growth factor 2 mRNA binding protein 2 2 lymphoma leukaemia_lymphoma TSG large_deletion TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 24000 PPP2CB::GSR ENSG00000104695.13::ENSG00000104687.14 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4076 TRUE 1536 PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30791197:- chr8:30631973-30671830:- chr8:30648713:- GSR ENSG00000104687.14 protein_coding - - chr8:30678066-30727846:- chr8:30712088:- chr8:30535583-30585363:- chr8:30569605:- chr8:30787856,chr8:30787858 chr8:30728003,chr8:30728002 NA NA chr8:30645372,chr8:30645374 chr8:30585520,chr8:30585519 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Calcineurin-like_phosphoesterase(100%)|Pyridine_nucleotide-disulphide_oxidoreductase(88%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(100%) Metallophos(100%)|FAD_oxidored(12%),Pyr_redox(100%),Pyr_redox_2(65%),Pyr_redox_3(64%),Pyr_redox_dim(100%) 2 7 4 316 1268 ENST00000221138.9 ENST00000221130.11 upstream downstream duplicates(1) CTGAAACCTTTAACCATGCCAATGGTCTCACACTGGTTTCTCGTGCCCACCAGCTTGTAATGGAG___GGATACAATTGGTGTCATGATCGGAATGTGGTTACCATTTTCAGTGCACCCAATTACTGTTATCGTTGTGGGAACCAGGCTGCTATCATGGAATTAGATGACACTTTAAAATATTCCTT|GTGAATGTTGGATGTGTACCCAAAAAG___GTAATGTGGAACACAGCTGTCCACTCTGAATTCATGCATGATCATGCTGATTATGGCTTTCCAAGTTGTGAGGGTAAATTCAATTGGCGGTAAGTGTCAACACTCAGAGGGTTCAGTTTCCAAGTGTAGATATTTTTCTTTTATAACTGAGCCATAAACTTTTTTAGGGATGGA...TGCCATCTATCAAAACAATCTCACCAAG___TCCCATATAGAAATCATCCGTGGCCATGCAGCCTTCACGAGTGATCCCAAGCCCACAATAGAGGTCAGTGGGAA ETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSl|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24001 PPP2CB::GSR ENSG00000104695.13::ENSG00000104687.14 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4076 TRUE 1536 PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30812320:- chr8:30631973-30671830:- chr8:30669836:- GSR ENSG00000104687.14 protein_coding - - chr8:30678066-30727846:- chr8:30712088:- chr8:30535583-30585363:- chr8:30569605:- chr8:30787856,chr8:30787858 chr8:30728003,chr8:30728002 NA NA chr8:30645372,chr8:30645374 chr8:30585520,chr8:30585519 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Pyridine_nucleotide-disulphide_oxidoreductase(88%),Pyridine_nucleotide-disulphide_oxidoreductase__dimerisation_domain(100%) |FAD_oxidored(12%),Pyr_redox(100%),Pyr_redox_2(65%),Pyr_redox_3(64%),Pyr_redox_dim(100%) 0 1 0 665 1268 ENST00000221138.9 ENST00000221130.11 upstream downstream none GGACCAGTGGGTCGAGCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTGCGAGAAG|GTGAATGTTGGATGTGTACCCAAAAAGG...TGCTGATTATGGCTTTCCAAGTTGTGAGGGTAAATTCAATTGGCG___TGTTATTAAGGAAAAGCGGGATGCCTATGTGAGCCGCCTGAATGCCATCTATCAAA DQWVEQLNECKQLNENQVRTLCEK|VNVGCVPKK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24005 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4077 TRUE 1537 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178825588:+ chr3:177990720-178562217:+ chr3:178543376:+ chr3:178756620,chr3:178760472,chr3:178839420,chr3:178756866,chr3:178760496,chr3:178839425 chr3:178756866,chr3:178760496,chr3:178808707,chr3:178756620,chr3:178760472,chr3:178808700 NA NA chr3:178474408,chr3:178478260,chr3:178557208,chr3:178474654,chr3:178478284,chr3:178557213 chr3:178474654,chr3:178478284,chr3:178526495,chr3:178474408,chr3:178478260,chr3:178526488 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 5 0 3 172 16 ENST00000437488.5 ENST00000437510.5 upstream upstream mismatches(1) TGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTATTCTCCTGGGACTGGC...TGTGCTCCATCATGATGTATTTTCTGCTGGGAATCACACTCCTGCGCTCATACATGCAGAG___CGTGTGGACCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAAcTGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24006 KCNMB2-AS1::KCNMB2 ENSG00000237978.6::ENSG00000197584.13 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4077 TRUE 1537 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178841545:- chr3:178244293-178655140:- chr3:178559333:- KCNMB2 ENSG00000197584.13 protein_coding + + chr3:178272932-178844429:+ chr3:178825588:+ chr3:177990720-178562217:+ chr3:178543376:+ chr3:178756620,chr3:178760472,chr3:178839420,chr3:178756866,chr3:178760496,chr3:178839425 chr3:178756866,chr3:178760496,chr3:178808707,chr3:178756620,chr3:178760472,chr3:178808700 NA NA chr3:178474408,chr3:178478260,chr3:178557208,chr3:178474654,chr3:178478284,chr3:178557213 chr3:178474654,chr3:178478284,chr3:178526495,chr3:178474408,chr3:178478260,chr3:178526488 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 1 2 0 21 16 ENST00000451742.5 ENST00000437510.5 upstream upstream none CTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAG...CCTTGCTTCTCCTTCATTTTCTGCCATGACTGTAAGTTCCCTGAGGCCTTCCCATCCATGTGGAACT|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAcAA...CATGATGTATTTTCTGCTGGGAATCACcCTCCTGCGCTCATACATGCAGAG___CGTGTGGACCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAAcTGCTCCTTCAGCTGTGGTCCAGACTGCTGGAAACTTTCTCAGTACCCCTGCCTCCAGGTGTACGTTAACCTGACTTCTTCCGGGGAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24007 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4078 TRUE 1538 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178859489:- chr3:178244293-178655140:- chr3:178577277:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178825588:+ chr3:178136911-178561088:+ chr3:178543376:+ chr3:178756620,chr3:178760472,chr3:178839420,chr3:178756866,chr3:178760496,chr3:178839425 chr3:178756866,chr3:178760496,chr3:178808707,chr3:178756620,chr3:178760472,chr3:178808700 NA NA chr3:178474408,chr3:178478260,chr3:178557208,chr3:178474654,chr3:178478284,chr3:178557213 chr3:178474654,chr3:178478284,chr3:178526495,chr3:178474408,chr3:178478260,chr3:178526488 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 5 0 3 172 16 ENST00000437488.5 ENST00000614557.1 upstream upstream mismatches(1) TGCTGTGCTAGCAATCAGCGAGACTCCGTGGGCGTAGGACCCTCCGAGCCAG___AGATGGGATCTTACTACATTGCCCAGGCTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAGACTACAG|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAAAAGGAAAACAGTCACAGCACTGAAGGCAGGAGAGGACCGAGCTATTCTCCTGGGACTGGC...TGTGCTCCATCATGATGTATTTTCTGCTGGGAATCACACTCCTGCGCTCATACATGCAGAG___CGTGTGGACCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAAcTGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24008 KCNMB2-AS1::ENSG00000275163 ENSG00000237978.6::ENSG00000275163.1 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4078 TRUE 1538 KCNMB2-AS1 ENSG00000237978.6 lncRNA - - chr3:178526505-178937352:- chr3:178841545:- chr3:178244293-178655140:- chr3:178559333:- ENSG00000275163 ENSG00000275163.1 protein_coding + + chr3:178419123-178843300:+ chr3:178825588:+ chr3:178136911-178561088:+ chr3:178543376:+ chr3:178756620,chr3:178760472,chr3:178839420,chr3:178756866,chr3:178760496,chr3:178839425 chr3:178756866,chr3:178760496,chr3:178808707,chr3:178756620,chr3:178760472,chr3:178808700 NA NA chr3:178474408,chr3:178478260,chr3:178557208,chr3:178474654,chr3:178478284,chr3:178557213 chr3:178474654,chr3:178478284,chr3:178526495,chr3:178474408,chr3:178478260,chr3:178526488 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |Calcium-activated_potassium_channel__beta_subunit(100%),KCNMB2__ball_and_chain_domain(68%) |CaKB(100%),KcnmB2_inactiv(0%) 1 2 0 21 16 ENST00000451742.5 ENST00000614557.1 upstream upstream none CTGAAGTGCAGTGGCTATTAACAGCTGTAATCATAATGCATTGCAGCTTTGAATTCCTGGGCTTGAGCGACCTCCCCACCTTAGCCTCCTGAGTAGCTGAG...CCTTGCTTCTCCTTCATTTTCTGCCATGACTGTAAGTTCCCTGAGGCCTTCCCATCCATGTGGAACT|AAATATTTACCAGAAAATCAGGGACCATGACCTCCTGGACAcAA...CATGATGTATTTTCTGCTGGGAATCACcCTCCTGCGCTCATACATGCAGAG___CGTGTGGACCGAAGAGTCTCAATGCACCTTGCTGAATGCGTCCATCACGGAAACATTTAAcTGCTCCTTCAGCTGTGGTCCAGACTGCTGGAAACTTTCTCAGTACCCCTGCCTCCAGGTGTACGTTAACCTGACTTCTTCCGGGGAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24029 LPP::TBL1XR1 ENSG00000145012.15::ENSG00000177565.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188524787:+ chr3:187871072-188608460:+ chr3:188242575:+ TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177098541:- chr3:176737128-176945788:- chr3:176816329:- chr3:188529312,chr3:188529311 chr3:177180668,chr3:177180669 NA NA chr3:188247100,chr3:188247099 chr3:176898456,chr3:176898457 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none |LisH(100%),WD_domain__G-beta_repeat(100%) |ANAPC4_WD40(100%),LisH(100%),PD40(100%),WD40(100%) 0 1 1 75 334 ENST00000414139.6 ENST00000457928.7 downstream downstream none TGATTCCAGTGCCCTTCCATCTATCTCTGGAAACTTTCCTCCTCCACCACCTCTTGATGAAGAGGCTTTCAAAGTACAG___GGGAATCCCGGAGGCAAGACAC...CTTGAGTGCAGCTCCCCCTATAAGCCTCGGCCTCCACAG|CATCAACAACAGCAACTTGTGATTGGCGGTGACCGGATATTCAGTTGCACATCCCCACATCA...ATTTTCTCATTCAGCATTTACCTTTGGTATAGAAAGCCATATCAGTCAGTCCAATATAAATGGTGCCCTCGTCCCACCCGCTGCATTGATTTCTATCATCC LECSSPYKPRPPQ|hqqqqlviggdrifsctsph NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation 24030 NAALADL2::PHC3 ENSG00000177694.16::ENSG00000173889.16 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAALADL2 ENSG00000177694.16 protein_coding + + chr3:174438573-175810548:+ chr3:174859450:+ chr3:174156363-175528336:+ chr3:174577240:+ PHC3 ENSG00000173889.16 protein_coding - - chr3:170086732-170181749:- chr3:170122744:- chr3:169804520-169899537:- chr3:169840532:- chr3:175013071,chr3:175013071 chr3:170129451,chr3:170129450 NA NA chr3:174730861,chr3:174730861 chr3:169847239,chr3:169847238 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 0 2 0 3 152 ENST00000454872.6 ENST00000495893.7 downstream downstream duplicates(1) ACAACTTGAAACTGCTTGGCCCTCTTTAAAAAGAAATAATAAAATGGGAGAGAATGAAGCAAGTTTACCTAACACGTCTTTGCAAG|GTTTATCAGGTAGAAGATGTGTGTGAAGAAGAAATGCCAGAAGAGTCAGATGAATGTGTCCGGATGGATAGAACCCCACCACCACCCACTTTGTCTCC...ACATGTTTCTGTTCCcCCACCTCCATTGTTACTTCCAGCTGCCACCACAAGGAGTAACAGTACATCTATGCACAGTAGCATTCCCAGTATAGAGAACAAAC MGENEASLPNTSLQ|glsgrrcv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24034 ERGIC1::ADGRV1 ENSG00000113719.17::ENSG00000164199.18 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4079 TRUE 1539 ERGIC1 ENSG00000113719.17 protein_coding + + chr5:172834251-172952792:+ chr5:172856311:+ chr5:172261254-172379795:+ chr5:172283314:+ ADGRV1 ENSG00000164199.18 protein_coding + + chr5:90529344-91164437:+ chr5:90985344:+ chr5:89825161-90460254:+ chr5:90281161:+ chr5:172884205,chr5:172884206 chr5:90970832,chr5:90970830 NA NA chr5:172311208,chr5:172311209 chr5:90266649,chr5:90266647 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none Endoplasmic_Reticulum-Golgi_Intermediate_Compartment_(ERGIC)(2%)|7_transmembrane_receptor_(Secretin_family)(67%) ERGIC_N(27%)|7tm_2(55%) 1 0 0 3 529 ENST00000687901.1 ENST00000405460.9 downstream upstream none CCGGCGGCGGCACGATGCCCTTTGACTTCAGGAG___GAGAGACCCTGAAGCACTTGAGGCCAGAGGAAGACATGCGCCTTGTCAGTGATCCCTGCATCCCTAG...CAGGCAGGTGGACTTGAAACTTACTCACAAGAAGCAAAGAGCCCTGTTGGAAAG|TCTGTGAATTTCTGGTACGTGCTGGTGATGAATGATGAGCACACAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24035 ERGIC1::ADGRV1 ENSG00000113719.17::ENSG00000164199.18 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4079 TRUE 1539 ERGIC1 ENSG00000113719.17 protein_coding + + chr5:172834251-172952792:+ chr5:172834433:+ chr5:172261254-172379795:+ chr5:172261436:+ ADGRV1 ENSG00000164199.18 protein_coding + + chr5:90529344-91164437:+ chr5:91072447:+ chr5:89825161-90460254:+ chr5:90368264:+ chr5:172884205,chr5:172884206 chr5:90970832,chr5:90970830 NA NA chr5:172311208,chr5:172311209 chr5:90266649,chr5:90266647 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Endoplasmic_Reticulum-Golgi_Intermediate_Compartment_(ERGIC)(2%)|7_transmembrane_receptor_(Secretin_family)(41%) ERGIC_N(0%)|7tm_2(26%) 0 1 0 163 135 ENST00000393784.8 ENST00000405460.9 downstream upstream none GGCCTGCAGCGCTCCCACCCCCGGCGGCGGCACGATGCCCTTTGACTTCAGGAG|GTGTTTTATTCCAAACGTCTATGCTGCTTTGTTCACTGCAGCTCTTG...ATGATGATGTCTTCAGAGGAAGGACAAATGCTGCAG___AAATTCCACTGATTTTATATCTCTTTGCTCTGATTTCCGTGACATGGCTTTGGGGAGGACTACAC MPFDFRr|CFIPNVYAALFTAAL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24041 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2227 TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 139 303 296 543 1651 ENST00000667305.1 ENST00000423902.7 downstream upstream duplicates(169),low_entropy(1),mismappers(1),mismatches(24),multimappers(4) TATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|TAATAAGAAACCTGACTCAGAAGCAAGTGCTTTGAAGAAAAAGGTCAACAAGGGAAAAACAGAAGGTTCTGAAAATTCAGACTTAGACAAAACACCCCCACCATCTCCTCCTCCTGAAGAAGATGAGGACCCAGGTGTTCAG___AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTGATGAGGAGGCAGATGATGCAGATGCTGCTGGGAGGGATTCCCCCTCCAACACCTCCCAGTCAGAACAGCAG___GAATCTGTTGATGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24042 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2228 TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 48 63 211 1169 1651 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(54),low_entropy(5),mismatches(17) GGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|TAATAAGAAACCTGACTCAGAAGCAAGTGCTTTGAAGAAAAAGGTCAACAAGGGAAAAACAGAAGGTTCTGAAAATTCAGACTTAGACAAAACACCCCCACCATCTCCTCCTCCTGAAGAAGATGAGGACCCAGGTGTTCAG___AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTGATGAGGAGGCAGATGATGCAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24043 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60800388:+ chr8:61591299-61780587:+ chr8:61712947:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 5 4 131 543 1631 ENST00000667305.1 ENST00000423902.7 downstream upstream duplicates(15),mismatches(14),multimappers(2) TTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTGATGAGGAGGCAGATGATGCAGATGCTGCTGGGAGGGATTCCCCCTCCAACACCTCCCAGTCAGAACAGCAG___GAATCTGTTGATGCAGAAGGCCCAGTGGTAGAAAAAATTATGAGCAGTCGTTCAGTAAAAAAGCAG___AAGGAATCTGGAGAGGAGGTAGAAATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24044 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60800388:+ chr8:61591299-61780587:+ chr8:61712947:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 3 5 57 1169 1631 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(7),mismatches(7) GGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTGATGAGGAGGCAGATGATGCAGATGCTGCTGGGAGGGATTCCCCCTCCAACACCTCCCAGTCAGAACAGCAG___GAATCTGTTGATGCAGAAGGCCCAGTGGTAGAAAAAATTATGAGCAGTCGTTCAGTAAAAAAGCAG___AAGGAATCTGGAGAGGAGGTAGAAATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24045 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 3 2 28 3048 1651 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(7),low_entropy(1),mismatches(3) CGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TAATAAGAAACCTGACTCAGAAGCAAGTGCTTTGAAGAAAAAGGTCAACAAGGGAAAAACAGAAGGTTCTGAAAATTCAGACTTAGACAAAACACCCCCACCATCTCCTCCTCCTGAAGAAGATGAGGACCCAGGTGTTCAG___AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24046 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60816387:+ chr8:61591299-61780587:+ chr8:61728946:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(71%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(8%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 3 20 543 1997 ENST00000667305.1 ENST00000423902.7 downstream upstream duplicates(2),mismappers(2),mismatches(5) GCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|CTCTTATCTTCATTGTCAGTGGGCATCTATAGAAGATCTGGAAAAAGATAAGAGAATTCAGCAAAAAATTAAACGATTTAAGGCAAAGCAGGGCCAGAACAAGTTCCTTTCAGAG___ATTGAGGATGAGCTTTTTAATCCAGATTATGTGGAGGTTGACCGGATAATGGACTTTGCACGTAGCACAGATGACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24047 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60808217:+ chr8:61591299-61780587:+ chr8:61720776:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(87%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(58%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 1 17 1169 1955 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(2),mismatches(3) GGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|AAGGAATCTGGAGAGGAGGTAGAAATTGAGGAATTCTATGTGAAATACAAAAACTT___CTCTTATCTTCATTGTCAGTGGGCATCTATAGAAGATCTGGAAAAAGATAAGAGAATTCAGCAAAAAATTAAACGATTTAAGGCAAAGCAGGGCCAGAACAAGTTCCTTTCAGAG___ATTGAGGATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24048 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60808217:+ chr8:61591299-61780587:+ chr8:61720776:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(87%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(58%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 0 37 543 1955 ENST00000667305.1 ENST00000423902.7 downstream upstream duplicates(3),mismappers(1),mismatches(6) GGCCAGATCTGCCCTCCA___...GCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAGTGGAGGCTGAATCATCTCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|AAGGAATCTGGAGAGGAGGTAGAAATTGAGGAATTCTATGTGAAATACAAAAACTT___CTCTTATCTTCATTGTCAGTGGGCATCTATAGAAGATCTGGAAAAAGATAAGAGAATTCAGCAAAAAATTAAACGATTTAAGGCAAAGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24049 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 1 0 28 250 1651 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(7),mismatches(3) GCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTC...CAACTGGAATTCCACTTACGG|TAATAAGAAACCTGACTCAGAAGCAAGTGCTTTGAAGAAAAAGGTCAACAAGGGAAAAACAGAAGGTTCTGAAAATTCAGACTTAGACAAAACACCCCCACCATCTCCTCCTCCTGAAGAAGATGAGGACCCAGGTGTTCAG___AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24050 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60800388:+ chr8:61591299-61780587:+ chr8:61712947:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 1 0 11 3048 1631 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(2),mismatches(1) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AAGAGACGGTCCAGCAGACAGGTGAAGAGAAAGCGCTACACTGAAGACCTGGAGTTCAAGATTTCTGATGAGGAGGCAGATGATGCAGATGCTGCTGGGAGGGATTCCCCCTCCAACACCTCCCAGTCAGAACAGCAG___GAATCTGTTGATGCAGAAGGCCCAGTGGTAGAAAAAATTATGAGCAGTCGTTCAGTAAAAAAGCAG___AAGGAATCTGGAGAGGAGGTAGAAATTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24051 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60816387:+ chr8:61591299-61780587:+ chr8:61728946:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(71%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(8%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 1 1 10 1169 1997 ENST00000651587.1 ENST00000423902.7 downstream upstream duplicates(2),mismatches(3) GCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CTCTTATCTTCATTGTCAGTGGGCATCTATAGAAGATCTGGAAAAAGATAAGAGAATTCAGCAAAAAATTAAACGATTTAAGGCAAAGCAGGGCCAGAACAAGTTCCTTTCAGAG___ATTGAGGATGAGCTTTTTAATCCAGATTATGTGGAGGTTGACCGGATAATGGACTTTGCACGTAGCACAGATGACCGGGGAGAG___CCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24052 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60816387:+ chr8:61591299-61780587:+ chr8:61728946:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(71%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(8%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 1 4 3048 1997 ENST00000667305.1 ENST00000423902.7 downstream upstream none CGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTCTTATCTTCATTGTCAGTGGGCATCTATAGAAGATCTGGAAAAAGATAAGAGAATTCAGCAAAAAATTAAACGATTTAAGGCAAAGCAGGGCCAGAACAAGTTCCTTTCAGAG___ATTGAGGATGAGCTTTTTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24053 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60836073:+ chr8:61591299-61780587:+ chr8:61748632:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Helicase_conserved_C-terminal_domain(100%) |BRK(100%),Helicase_C(100%) 1 0 2 1169 2168 ENST00000651587.1 ENST00000423902.7 downstream upstream none CTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTGCTGAAGAGAAAATTTTGGAAGAGTTTAAAGAAACACACAATGCAGAGTCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24054 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60828663:+ chr8:61591299-61780587:+ chr8:61741222:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(40%) |BRK(100%),Helicase_C(100%),ResIII(0%),SNF2-rel_dom(22%) 1 0 1 528 2218 ENST00000651587.1 ENST00000423902.7 downstream upstream none GACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGT...ATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GAACACAAAGTGCTGCTGACGGGAACCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24055 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60848515:+ chr8:61591299-61780587:+ chr8:61761074:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |BRK_domain(100%) |BRK(100%) 0 1 1 3048 2213 ENST00000667305.1 ENST00000423902.7 downstream upstream none CGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGAaGACGAGCTGCG...CCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCCTGCTGCGTGTCC...ACAAGAAGTGATAGGAGACCAGGCGGATAAGATCTTAGAGGGTGCTGACTCAAG___TGAAGCCGATGTGTGGATCCCTGAACCTTTCCATGCTGAAGTTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24056 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902539:+ chr8:128806772-129199347:+ chr8:128914785:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |BRK_domain(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |BRK(100%),Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 0 0 18 1651 ENST00000657297.1 ENST00000423902.7 downstream upstream mismatches(1) GTTGAGtTCTgTGTTTACTTAGATtTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCcACTCTTCCTGtgGAAGCATCTGATGCACGT...TGGGATGCGGTTGAAGTTTGGAGTATGATTGAACTCATCACGCAG|TAATAAGAAgCCTGACTCAGAAGCAAGTGCTTTGAAGAAAAAGGTCAACAAGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24061 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 2231 TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Amino_acid_permease(67%) |AA_permease(14%),AA_permease_2(15%) 60 33 112 3048 1138 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(33),mismatches(13) GGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCTCTTAACCTTCATTAACTGTGCCTATGTCAAATGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAAAGTATTGGCACTGATCGCGGTCATCGTTGCAGGCATTGTTAGACTTGGCCAGG___GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24062 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Amino_acid_permease(67%) |AA_permease(14%),AA_permease_2(15%) 4 7 114 250 1138 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(20),mismatches(13) C...GCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTCTCTTAACCTTCATTAACTGTGCCTATGTCAAATGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAAAGTATTGGCACTGATCGCGGTCATCGTTGCAGGCATTGTTAGACTTGGCCAGG___GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24063 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Amino_acid_permease(67%) |AA_permease(14%),AA_permease_2(15%) 5 3 114 204 1138 ENST00000523328.6 ENST00000555702.5 downstream downstream duplicates(21),mismatches(14) CACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GTCTCTTAACCTTCATTAACTGTGCCTATGTCAAATGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAAAGTATTGGCACTGATCGCGGTCATCGTTGCAGGCATTGTTAGACTTGGCCAGG___GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24064 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22778937:- chr14:23242431-23299029:- chr14:23248146:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Amino_acid_permease(57%) |AA_permease(11%),AA_permease_2(12%) 1 4 48 3048 1624 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(9),mismatches(8) GGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCTGGCACTGTACTCAGCTCTGTTCTCCTACTCAGGCTGGGACACCCTCAACTATGTCACTGAAGAGATCAAGAATCCTGAGAG___GAACCTGCCCCTCTCCATTGGCATCTCCATGCCCATTGTCACCATCATCTATATCTTGACCAATGTGGCCTATTATACTGTGCTAGACATGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24071 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Amino_acid_permease(67%) |AA_permease(14%),AA_permease_2(15%) 0 1 114 528 1138 ENST00000662410.1 ENST00000555702.5 downstream downstream duplicates(16),mismatches(12) GCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTC...CCATTATTTGAGATGAGTTACATCTTGGAG|GTCTCTTAACCTTCATTAACTGTGCCTATGTCAAATGGGGAACCCTGGTACAAGATATTTTCACCTATGCTAAAGTATTGGCACTGATCGCGGTCATCGTTGCAGGCATTGTTAGACTTGGCCAGG___GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24072 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22778937:- chr14:23242431-23299029:- chr14:23248146:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Amino_acid_permease(57%) |AA_permease(11%),AA_permease_2(12%) 0 1 48 250 1624 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(12),mismatches(10) CTGGTCTCCATTATTTGAGATGgGTTACATCTTGGAGGgGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GAGCCTCTACTCATTTTGAGAATTCCTTTGAGGGcTCATCATTTGCAGTGGGTGACATTGCCCTGGCACTGTACTCAGCTCTGTTCTCCTACTCAGGCTGGGACACCCTCAACTATGTCACTGAAGAGATCAAGAATCCTGAGAG___GAACCTGCCCCTCTCCATTGGCATCTCCATGCCCATTGTCACCATCATCTATATCTTGACCAATGTGGCCTATTATACTGTGCTAGACATGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24073 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22773716:- chr14:23242431-23299029:- chr14:23242925:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 7 3 7 3048 1587 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(5) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCTGCCACAAGGTACCTCCAGGTCCTGTGTATGTCAGTTGCTGCAGAAATGGATTTGGAAGATGGAGGAGAGATGCCCAAGCAACGGGATCCCAAgTCTAACTAAACACCATCTGGAATCCTGATGTGGAAAGCAGGGGTTTCTGGTCTACTGGCTAGAGCTAAGGAAGTTGAAAAGGAAAGCTCACTTCTTTGGAGGCACCTGTCCAGAAGCCTGGCCTAGGC...ACTTACTTTTTGAAATGAAAAGTAATTTATTTGTTTTGCTtCATACTGTTCCAGACTTTTAAAGGGGACAATGAAGGTGACTGTGGGGAGGAGCATGTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24074 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22775540:- chr14:23242431-23299029:- chr14:23244749:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Amino_acid_permease(26%) |AA_permease(2%),AA_permease_2(3%) 1 1 13 3048 1150 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(4) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCTTTTCTTTGTGGGCTCAAGAGAAG...TGATGCCATCTGCATGATCCATGTTGAGCGGTTCACACCAGTGCCTTCTCTGCTCTTCAAT___GGTATCATGGCATTGATCTACTTGTGCGTGGAAGACATCT...CTTCTGCCTCTGCACCATCTTCCTGGTGGCTGTTCCACTTTACAGTGATACTATCAACTCCCTCATCGGCATTGCCATTGCCCTCTCAGGCCTGCCCTTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24075 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22774503:- chr14:23242431-23299029:- chr14:23243712:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Amino_acid_permease(17%) |AA_permease(0%),AA_permease_2(1%) 0 1 12 3048 1194 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(3) TGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTATCATGGCATTGATCTACTTGTGCGTGGAAGACATCTTCCAGCTCATTAACTACTACAGCTTCAGCTACTGGTTCTTTGTGGGGCTTTCTATTGTGGGTCAGCTTTATCTGCGCTGGAAGGAGCCTGATCGACCTCGTCCCCTCAAG___CTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24076 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4082 TRUE 1541 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22774116:- chr14:23242431-23299029:- chr14:23243325:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Amino_acid_permease(5%) |AA_permease_2(0%) 1 2 8 3048 1457 ENST00000651587.1 ENST00000555702.5 downstream downstream duplicates(3) CGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTCAGCGTTTTCTTCCCGATTGTCTTCTGCCTCTGCACCATCTTCCTGGTGGCTGTTCCACTTTACAGTGATACTATCAACTCCCTCATCGGCATTGCCATTGCCCTCTCAGGCCTGCCCTTTTACTTCCTCATCATCAGAGTGCCAGAACATAAGCGACCGCTTTACCTCCGAAGGATCaTGG___GGTCTGCCACAAGGTACCTCCAGGTCCTGTGTATGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24089 PVT1::CCNB1IP1 ENSG00000249859.14::ENSG00000100814.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4084 FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CCNB1IP1 ENSG00000100814.19 protein_coding - - chr14:20311368-20333312:- chr14:20316560:- chr14:20779527-20801471:- chr14:20784719:- chr8:127807973 chr14:20323921 NA NA chr8:128820219 chr14:20792080 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |zinc-RING_finger_domain(100%) |zf-RING_5(100%) 1 0 8 3048 1660 ENST00000651587.1 ENST00000353689.8 downstream downstream duplicates(5),mismatches(3) CCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGcCACGGCCAGATCTGCCCTCCA|GaCTCTCTTCAGCTTCTGGAGACCTCACTATCCTATTATGTCTTTGTGTGAAGACATGCTGCTTTGTAATTATCGAAAGTGTCGCATCAAACTCTCTGGCTATGCATGGGTCACTGCCTGCTCTCACATCTTCTGTGATCAGCATGGCAGTGGTGAGTTTAGTCGCTCACCAGCTATCTGTCCTGCCTGCAACAGTACCCTTTCTGGAAAGCTAGATATTGTCCGCACAGAACTCAGTCCATCAGAGGAATATAAAGCTATGGTATTGGCAGGACTGCGACCAGAGATCGTGTTGGACATTAGCTCCCGAGCGCTGGCCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin B1 interacting protein 1, E3 ubiquitin protein ligase 1 Yes leiomyoma mesenchymal TSG, fusion translocation 24093 CACNA1C::SPSB2 ENSG00000151067.23::ENSG00000111671.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4085 TRUE 1542 CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2120430:+ chr12:2079938-2807116:+ chr12:2229596:+ SPSB2 ENSG00000111671.10 protein_coding - - chr12:6870935-6889358:- chr12:6877600:- chr12:6980099-6998522:- chr12:6986764:- chr12:2165248,chr12:2165248,chr12:2165247 chr12:6880271,chr12:6880270,chr12:6880272 NA NA chr12:2274414,chr12:2274414,chr12:2274413 chr12:6989435,chr12:6989434,chr12:6989436 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Ion_transport_protein(3%)|SOCS_box(100%),SPRY_domain(100%) DCP1(100%),Ion_trans(0%)|SOCS_box(100%),SPRY(100%) 44 11 56 178 151 ENST00000682462.1 ENST00000437851.1 downstream downstream duplicates(16),mismappers(2),mismatches(15) CCACGGCCACACGCCCGCCCCGAGCCCTGCTCTGCCTGACCCTGAAGAACCCCATCCGGAGGGCCTGCATCAGCATTGTCGAATGGAA___ACCATTTGAAATAATTATTTTACTGACTATTTTTGCCAATTGTGTGGCCTTAGCGATCTATATTCCCTTTCCAGAAGATGATTCCAACGCCACCAATTCCAACCTG|CTTGTGACAGTCCAGCCCCTTCAGCCTGGAGTTCCACCTACCAGTCCCCACATGTGCTGTCTCTCACCAAGGTTGCCAGTGACCTCTGACCAAAACAATCTT___TGGCTCCCCATCACTGGCCTGTCCTATGGGAAAACATTTGCATTCCTTAACTCAGCCTAGAAGGCCTCTGTGACTTGCTGTCTACTTATCTGGCCCTTCTCATGCTTCCTTTCTGGCTG...CCTTGAAGATATCGTACTTCCCCAAACCCACCTGCTGCTTCTTGCTTTTTTTCATGCGGACTCTTCTGTCTGGAATATCTTCTACATGCAGCAACCGTA TATRPPRALLCLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFPEDDSNATNSNL|lvtvqplqpgvpptsphmcclsprlpvtsdqnnlwlpitglsygktfaflnsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24094 CACNA1C::SPSB2 ENSG00000151067.23::ENSG00000111671.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4085 TRUE 1542 CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2120430:+ chr12:2079938-2807116:+ chr12:2229596:+ SPSB2 ENSG00000111671.10 protein_coding - - chr12:6870935-6889358:- chr12:6872997:- chr12:6980099-6998522:- chr12:6982161:- chr12:2165248,chr12:2165248,chr12:2165247 chr12:6880271,chr12:6880270,chr12:6880272 NA NA chr12:2274414,chr12:2274414,chr12:2274413 chr12:6989435,chr12:6989434,chr12:6989436 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Ion_transport_protein(3%)|SOCS_box(100%),SPRY_domain(100%) DCP1(100%),Ion_trans(0%)|SOCS_box(100%),SPRY(100%) 0 1 5 178 598 ENST00000682462.1 ENST00000432205.5 downstream downstream duplicates(1) CCCGCCCCGAGCCCTGCTCTGCCTGACCCTGAAGAACCCCATCCGGAGGGCCTGCATCAGCATTGTCGAATGGAA___ACCATTTGAAATAATTATTTTACTGACTATTTTTGCCAATTGTGTGGCCTTAGCGATCTATATTCCCTTTCCAGAAGATGATTCCAACGCCACCAATTCCAACCTG|CTCCCTTCCAGGTCAATCCAAACTGGAGCTCAACTTTCAGAAGAGAAAGACGCCCCAGCAAGCCTCTTTCGGGGAGTCCTCTAGCTCCTCACCTCCATGGGCCAGACAGCTCTGGCAGGGGGCAGCAGCAG...GTCCCGAGGGCTTGGAAGAGCTGCTGTCTGCACCCCCTCCTGACCTGGGGGCCCAGCGGCGCCACGGTTGGAACCCCAAAGACTGTTCAGAGAACATCGAG PPRALLCLTLKNPIRRACISIVEWKPFEIIILLTIFANCVALAIYIPFPEDDSNATNSNL|lpsrsiqtgaqlseekdapaslfrgvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24095 PICALM::CCDC81 ENSG00000073921.18::ENSG00000149201.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2237 TRUE 4086 TRUE 1543 PICALM ENSG00000073921.18 protein_coding - - chr11:85957175-86069882:- chr11:85974708:- chr11:85668218-85780924:- chr11:85685751:- CCDC81 ENSG00000149201.10 protein_coding + + chr11:86374736-86423109:+ chr11:86395334:+ chr11:86085778-86134151:+ chr11:86106376:+ chr11:85959644,chr11:85959655 chr11:86391770,chr11:86391759 NA NA chr11:85670687,chr11:85670698 chr11:86102812,chr11:86102801 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none ANTH_domain(100%)| ANTH(100%),ENTH(100%)| 16 37 46 1828 117 ENST00000393346.8 ENST00000354755.5 upstream upstream duplicates(19),mismatches(4) CTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCTGCAACAATG___GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|AGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGTGCTTGCGTTTCCAAG___GATTGAGCTCAAGGAGATGGAAAACAAACTGCCTATGGAGACCCTTGTAGAAGAATGTGGAGAGAATAGAGAAAGGAAGTGCAAGTTAAAAGACCAGTCAGACAAAGAAGAAGGCACCAGAG___ATATCTCATCACCCAAAAGACTTCGAG GGSNWQPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|RPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEECGENRERKCKLKDQSDKEEGTRDISSPKRLR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatidylinositol binding clathrin assembly protein (CALM) 1 Yes T-ALL, AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24096 PICALM::CCDC81 ENSG00000073921.18::ENSG00000149201.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2238 TRUE 4086 TRUE 1543 PICALM ENSG00000073921.18 protein_coding - - chr11:85957175-86069882:- chr11:85974708:- chr11:85668218-85780924:- chr11:85685751:- CCDC81 ENSG00000149201.10 protein_coding + + chr11:86374736-86423109:+ chr11:86392541:+ chr11:86085778-86134151:+ chr11:86103583:+ chr11:85959644,chr11:85959655 chr11:86391770,chr11:86391759 NA NA chr11:85670687,chr11:85670698 chr11:86102812,chr11:86102801 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ANTH_domain(100%)|CCDC81_eukaryotic_HU_domain_2(100%) ANTH(100%),ENTH(100%)|HU-CCDC81_euk_2(100%) 5 7 50 1828 29 ENST00000393346.8 ENST00000445632.7 upstream upstream duplicates(10),mismatches(2) GGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCTGCAACAATG___GCACCCCCTGTAATGGCCTATCCTGCTACTACACCAACAGGCATGATAGGATATGGAATT___CCTCCACAAATGGGAAGTGTTCCTGTAATGACGCAACCAACCTTAATATACAGCCAGCCTGTCATGAGACCTCCAAACCCCTTTGGCCCTGTATCAGGAGCACAG|GTGAAATCCCAATTGTTCCACTTAATTTTGTCATGATATCCCTGGAGGGTCCATTTAACAGAGATGTAGTGGAAGGATGTGTGAAGGAGACGTTGCTTTTTTTATCGCGTTCCATTTCCATGAAACAAAATGTGGAGTTTACATTCAAAGGAATTGGGGTCCTCATGATCAGAGACAGCAAAGTGAAGATGAGGTTTTATAAAGACTTCCTTTGTACCATGGATGGAAGTGGGGCTTTGGCAAAGGCCCTAGCAAAT___AGGCCTGGCACTGTGGACTCGGTGTTGT...TGGAGAGAATAGAGAAAGGAAGTGCAAGTTAAAAGACCAGTCAGACAAAGAAGAAGGCACCAGAG___ATATCTCATCACCCAAAAGACTTCGAGATAGACAAG QPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQ|vksqlfhlils* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatidylinositol binding clathrin assembly protein (CALM) 1 Yes T-ALL, AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24097 PICALM::CCDC81 ENSG00000073921.18::ENSG00000149201.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4086 TRUE 1543 PICALM ENSG00000073921.18 protein_coding - - chr11:85957175-86069882:- chr11:85981129:- chr11:85668218-85780924:- chr11:85692172:- CCDC81 ENSG00000149201.10 protein_coding + + chr11:86374736-86423109:+ chr11:86395334:+ chr11:86085778-86134151:+ chr11:86106376:+ chr11:85959644,chr11:85959655 chr11:86391770,chr11:86391759 NA NA chr11:85670687,chr11:85670698 chr11:86102812,chr11:86102801 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none ANTH_domain(100%)| ANTH(100%),ENTH(100%)| 0 2 19 1675 117 ENST00000393346.8 ENST00000354755.5 upstream upstream duplicates(1),mismatches(1) GGGCA___ATCTTGGCATCGGAAATGGAACCACTAAGAA___TGATGTAAATTGGAGTCAACCAGGTGAAAAGAAGTTAACTGGGGGATCTAACTGGCAACCAAAGGTTGCACCAACAACCGCTTGGAATGCTGCAACAATG|AGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGTGCTTGCGTTTCCAAG___GATTGAGCTCAAGGAGATGGAAAACAAACTGCCTATGGAGACCCTTGTAGAAGAATGTGGAGAG...___ATATCTCATCACCCAAAAGACTTCGAGATAGACAAGCTTTGTTCCCTGCCAAAGTGACAAATGTCAGC GNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATM|RPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEECG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatidylinositol binding clathrin assembly protein (CALM) 1 Yes T-ALL, AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24098 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2239 TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 14 14 62 3048 153 ENST00000651587.1 ENST00000646670.1 downstream upstream duplicates(22),mismatches(3) CGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24099 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2240 TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 4 2 68 3048 11 ENST00000651587.1 ENST00000521586.2 downstream upstream duplicates(16),mismatches(2) CGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTTAACTGATGTGATGAAATAAAGTCTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24100 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127878272,chr8:127878272 chr8:127368720,chr8:127368723 NA NA chr8:128890518,chr8:128890518 chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 2 4 67 119 153 ENST00000651587.1 ENST00000646670.1 downstream upstream duplicates(17),mismatches(4) CGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAG...CGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24101 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 3 1 66 250 153 ENST00000651587.1 ENST00000646670.1 downstream upstream duplicates(16),mismatches(4) TGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24102 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 3 2 64 528 153 ENST00000657183.1 ENST00000646670.1 downstream upstream duplicates(16),mismatches(3) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24103 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127414888:+ chr8:127568568-128431295:+ chr8:128427133:+ chr8:127878272,chr8:127803739,chr8:127878272 chr8:127368723,chr8:126942400,chr8:127368720 NA NA chr8:128890518,chr8:128815985,chr8:128890518 chr8:128380969,chr8:127954645,chr8:128380966 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 1 0 14 250 266 ENST00000651587.1 ENST00000645215.1 downstream upstream duplicates(2),mismatches(1) GTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGCTTTATGGAAAAGCCCACATGGTGAGCAACTGAGGCCTCCTACCAACAGCCAACAAGAAACCGGGGCCTTTGCCAACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTtCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24104 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:127878272,chr8:127878272 chr8:127368720,chr8:127368723 NA NA chr8:128890518,chr8:128890518 chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 2 0 73 204 11 ENST00000523328.6 ENST00000521586.2 downstream upstream duplicates(18),mismatches(4) GCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTTAACTGATGTGATGAAATAAAGTCTTCCATAATTTGAaAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24105 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:127878272,chr8:127878272 chr8:127368720,chr8:127368723 NA NA chr8:128890518,chr8:128890518 chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 73 119 11 ENST00000661988.1 ENST00000521586.2 downstream upstream duplicates(18),mismatches(4) GGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG___GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAA...TGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTTAACTGATGTGATGAAATAAAGTCTTCCATAATTTGAaAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24106 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 3 0 70 528 11 ENST00000657183.1 ENST00000521586.2 downstream upstream duplicates(17),mismatches(3) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CTGAACCATCACATTCCTTATACAGAGTGGGACAGCATTGGCTGAGTTCTACTAGCAAATGCCGGAGATGTGGTTCCTGTTGGCCTTTTAACTGATGTGATGAAATAAAGTCTTCCATAATTTGAaAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24107 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127878272,chr8:127878272 chr8:127368720,chr8:127368723 NA NA chr8:128890518,chr8:128890518 chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 3 67 204 153 ENST00000656491.1 ENST00000646670.1 downstream upstream duplicates(16),mismatches(5) TTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24108 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818998:+ chr8:128806772-129199347:+ chr8:128831244:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127878272,chr8:127878272 chr8:127368720,chr8:127368723 NA NA chr8:128890518,chr8:128890518 chr8:128380966,chr8:128380969 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 0 67 83 153 ENST00000656168.1 ENST00000646670.1 downstream upstream duplicates(16),mismappers(1),mismatches(4) CCTCAGCCTCCTGAGTAGCTGGGACTTGCAG|ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCAGGCTAAGTCACAAGCTTTTGTTATAAGGTCTCATCACACCATATGCCTCTCTTTCAAAACCAGCACCTGCAGAAAT___GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24109 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127414888:+ chr8:127568568-128431295:+ chr8:128427133:+ chr8:127878272,chr8:127803739,chr8:127878272 chr8:127368723,chr8:126942400,chr8:127368720 NA NA chr8:128890518,chr8:128815985,chr8:128890518 chr8:128380969,chr8:127954645,chr8:128380966 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 2 3 14 3048 266 ENST00000651587.1 ENST00000645215.1 downstream upstream duplicates(1),mismatches(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGCTTTATGGAAAAGCCCACATGGTGAGCAACTGAGGCCTCCTACCAACAGCCAACAAGAAACCGGGGCCTTTGCCAACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTtCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTAGCATCATGGTATGGCAGAAGCAGAATGGACTCAGGAATCATGGTGCCTACACTGGAATTTCAGATCGGCCACTGACACAATGGACACATTATTCAACATTTCCAAATCTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24110 WDR43::PVT1 ENSG00000163811.12::ENSG00000249859.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDR43 ENSG00000163811.12 protein_coding + + chr2:28894667-28948219:+ chr2:28906581:+ chr2:29117533-29171085:+ chr2:29129447:+ PVT1 ENSG00000249859.14 lncRNA + - chr8:127794526-128187101:+ chr8:127802821:- chr8:128806772-129199347:+ chr8:128815067:- chr2:28908365,chr2:28908358 chr8:127820014,chr8:127820017 NA NA chr2:29131231,chr2:29131224 chr8:128832260,chr8:128832263 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(51%)| WD40(51%)| 24 26 30 615 66 ENST00000407426.8 unknown downstream downstream duplicates(13),low_entropy(1),mismatches(4) ACTGACTTATTGGCTCTTGGCACAGCAGTTGGTAGCATTTTATTATACAGCACAGTAAAAGGAGAGTTACACAGTAAATTAATA___AGTGGTGGACATGACAACAGAGTCAACTGCATACAGTGGCATCAAGACAGTGGCTGTTTATATAGTTGTTCAGATGATAAACATATTGTGGAgTGGAACGTACAGACATGCAAAGTAAAGTG|CAGTTACATCTGCAGTGTGCCTCCCTCCCACACTGGAAgCTTCCCGAAGATGGCAACGGTTTCTCATTCACGGCAGAACACCTGTGCCTCACCCACACATTTGATTCACTAAATGCTGACCTCGTCCAAGGCATTGTTCCATCCAGCGAAAATATGATTCAACCCACATGTAATTTTAGATTTTCTAGTAGCCATAAAGTTAGAAAAAACAGATGAAATTAATTTTAATAATTTA TDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKc|syicsvppshtgsfpkmatvshsrqntcaspthlih* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24111 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 2241 TRUE 4088 TRUE 1545 TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31742647:+ chr20:30327074-30389608:+ chr20:30330450:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31538179:+ chr20:30102231-30165726:+ chr20:30125982:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Signal_peptide_peptidase(77%) |PUA(100%),Peptidase_A22B(74%),Pre-PUA(100%) 18 18 40 1529 746 ENST00000340513.4 ENST00000340852.9 downstream upstream duplicates(24),mismatches(3) TGGAACGGCTGAAGTTCACCTTCCAGCCCCTAGCGCCGTTCGCGCCGCTAGGCCTGGCTTCTGAGGCGGTTGCGGTGCTCGGTCGCCGCCTAGGCGGGGCAGGGTGCGAGCAGGGGCTTCGGGCCACGCTTCTCTTGGCGACAGGATTTTGCTGTGAAGTCCGTCCGGGAAACGGAGGAAAAAAAGAGTTGCGGGAGGCTGTCGGCTAATAACG___GTTCTTGATACATATTTGCCAGACTTCAAGATTTCAGAAAAGGGGTGAAAGAGAAGATTGCAACTTTGAGTCAGACCTGTAGGCCTGATAGACTGATTAAACCACAG|ATATTCTCCCAGGAGTACATCAACCTCCTGCTGTCCATGTATTTCTTCGTGCTGGGAATCCTGGCCCTGTCCCACACCATCAG___CCCCTTCATGAATAAGTTTTTTCCAGCCAGCTTTCCAAATCGACAGTACCAGCTGCTCTTCACACAGGGTTCTGGGGAAAACAAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary exact TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 TRUE|TRUE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24112 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 2242 TRUE 4088 TRUE 1545 TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31742647:+ chr20:30327074-30389608:+ chr20:30330450:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31544947:+ chr20:30102231-30165726:+ chr20:30132750:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Signal_peptide_peptidase(69%) |PUA(100%),Peptidase_A22B(58%),Pre-PUA(100%) 3 4 15 1529 838 ENST00000340513.4 ENST00000340852.9 downstream upstream duplicates(4),mismatches(1) GAAAAGAGGGAGCAGCTAGGGCGCGGGTCTCCCTCCTCCCGGAGTTTGGAACGGCTGAAGTTCACCTTCCAGCCCCTAGCGCCGTTCGCGCCGCTAGGCCTGGCTTCTGAGGCGGTTGCGGTGCTCGGTCGCCGCCTAGGCGGGGCAGGGgGCGAGCAGGGGCTTCGGGCCACGCTTCTCTTGGCGACAGGATTTTGCTGTGAAGTCCGTCCGGGAAACGGAGGAAAAAAAGAGTTGCGGGAGGCTGTCGGCTAATAACG___GTTCTTGATACATATTTGCCAGACTTCAAGATTTCAGAAAAGGGGTGAAAGAGAAGATTGCAACTTTGAGTCAGACCTGTAGGCCTGATAGACTGATTAAACCACAG|CCCCTTCATGAATAAGTTTTTTCCAGCCAGCTTTCCAAATCGACAGTACCAGCTGCTCTTCACACAGGGTTCTGGGGAAAACAAGGAAG___AGATCATCAATTATGAATTTGACACCAAGGACCTGGTGTGCCTGGGCCTGAGCAGCATCGTTGGCGTCTGGTACCTGCTGAG...CAACCTTTTTGGCCTGGCCTTCTCCCTTAATGGAGTAGAGCTCCTGCACCTCAACAATGTCAGCACTGGCTGCATCCTGCTGGGCGGACTCTTCATCTACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary exact TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 TRUE|TRUE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24113 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4088 TRUE 1545 TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31739621:+ chr20:30327074-30389608:+ chr20:30327424:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31538179:+ chr20:30102231-30165726:+ chr20:30125982:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Signal_peptide_peptidase(77%) |PUA(100%),Peptidase_A22B(74%),Pre-PUA(100%) 0 2 16 1792 746 ENST00000340513.4 ENST00000340852.9 downstream upstream duplicates(6) GTCAGATCTGAGGCGAGGCTAGGTGAGCCGTGGGAAGAAAAGAGGGAGCAGCTAGGGCGCGGGTCTCCCTCCTCCCGGAGTTTGGAACGGCTGAAGTTCACCTTCCAGCCCCTAGCGCCGTTCGCGCCGCTAGGCCTGGCTTCTGAGGCGGTTGCGGTGCTCGGTCGCCGCCTAGGCGGGGCAGGGTGCGAGCAGGGGCTTCGGGCCACGCTTCTCTTGGCGACAGGATTTTGCTGTGAAGTCCGTCCGGGAAACGGAGGAAAAAAAGAGTTGCGGGAGGCTGTCGGCTAATAACG|ATATTCTCCCAGGAGTACATCAACCTCCTGCTGTCCATGTATTTCTTCGTGCTGGGAATCCTGGCCCTGTCCCACACCATCAG___CCCCTTCATGAATAAGTTTTTTCCAGCCAGCTTTCCAAATCGACAGTACCAGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary exact TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 FALSE|FALSE|TRUE,TRUE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 TRUE|FALSE|FALSE 31527484|31527484|31554760 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24114 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86264263:+ chr11:85912254-85989855:+ chr11:85975305:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127132020:+ chr8:127568568-128431295:+ chr8:128144265:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none WD_domain__G-beta_repeat(70%)| WD40(80%)| 2 2 36 1121 51 ENST00000707108.1 unknown downstream upstream duplicates(4),mismatches(1) AACAGA___GTTACCTTGTATGAATGTCATTCACAAGGAGAAATCCGGTTGTTGCAATCTTACGTGGATGCTGAT___GCTGATGAAAACTTTTACACTTGTGCATG...AAG___CACTATGTTGGCCATGGAAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCtTGTCAGTAAGTAAAG___ATCATGCTTTACGATTATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGCGTAGAAGGGCACAGAGATGAAGTTCTAAGTGCT|GGACATGGATGAAGCTGGAAACCATCATCTTCAGCAAACTTACACAGGAACAGAAAACAAAACACCACATGTTCTCACTCATAAGTGGGAGCTGAAGAATGAGAACACATGGATACAGGGAGGAGAACATCACACACTGGGGCCTGTCGGAGGGTGGGGGGTTAGGGAAGGGATAGCATTAGGAGAAATACCTGATGTAGATGACAGGTTGATGGGTGCAGCAAACGACCATGG KHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA|ghg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24115 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86264263:+ chr11:85912254-85989855:+ chr11:85975305:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none WD_domain__G-beta_repeat(70%)| WD40(80%)| 2 3 5 1121 78 ENST00000707108.1 ENST00000646670.1 downstream upstream duplicates(1) GGAAGATCgTAACCAACCATTGTTTGGAGTTCAGTTTAACTGGCACAGTAAAGAAGGAGATCCATTAGTGTTTGaAACTGTAGGAAGCAACAGA___GTTACCT...TGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG___CACTATGTTGGCCATGGAAATGCTATCAATGAGCTGAAATTCCATC...TCTTCTCtTGTCAGTAAGTAAAG___ATCATGCTTTACGATTATGGAATATCCAGACGGACACTCTGGTGGCAATATTTGGAGGCGTAGAAGGGCACAGAGATGAAGTTCTAAGTGCT|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA|rclfskfnlkpecmetidavskvekgqsgsrgakrrrpaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24116 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86257596:+ chr11:85912254-85989855:+ chr11:85968638:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none WD_domain__G-beta_repeat(44%)| WD40(11%)| 0 1 4 1160 9 ENST00000707108.1 ENST00000647190.2 downstream upstream none GCAATACGAGCCATCCTCTGCTGGCTGTAGCTGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG___CACTATGTTGGCCAT...TATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCtTGTCAGTAAGTAAAG|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGG INELKFHPRDPNLLLSVSK|dtvspmkeeeekeekkkrkrkker NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24117 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86257596:+ chr11:85912254-85989855:+ chr11:85968638:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127301359:+ chr8:127568568-128431295:+ chr8:128313604:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none WD_domain__G-beta_repeat(44%)| WD40(11%)| 1 0 4 1160 27 ENST00000707108.1 ENST00000642795.1 downstream upstream none GCAATACGAGCCATCCTCTGCTGGCTGTAGCTGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG___CACTATGTTGGCCATGGAAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCtTGTCAGTAAGTAAAG|GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTATCATACGAACGCAG NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK|gsgvghfqqiillsyer NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24118 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86257596:+ chr11:85912254-85989855:+ chr11:85968638:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none WD_domain__G-beta_repeat(44%)| WD40(11%)| 1 0 4 1160 140 ENST00000707108.1 ENST00000642795.1 downstream upstream none CTTTTACACTTGTGCATGGACCTATGATAGCAATACGAGCCATCCTCTGCTGGCTGTAGCTGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG___CACTATGTTGGCCATGGAAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCtTGTCAGTAAGTAAAG|AGAACTGAGGTCGCAAGACAACAAACTGG FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK|en* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24119 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4089 TRUE 1546 EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86256512:+ chr11:85912254-85989855:+ chr11:85967554:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none WD_domain__G-beta_repeat(5%)| WD40(0%)| 0 0 0 980 78 ENST00000707108.1 ENST00000646670.1 downstream upstream low_entropy(1) CTATGATAGCAATACGAGCCATCCTCTGCTGGCTGTAGCTGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAG YDSNTSHPLLAVAGSRGIIRIINPITMQCIK|rclfskfnlkpecmetidavskvekgqsgsr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24120 EED::CASC19 ENSG00000074266.23::ENSG00000254166.4 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86257596:+ chr11:85912254-85989855:+ chr11:85968638:+ CASC19 ENSG00000254166.4 lncRNA - + chr8:127072694-127227541:- chr8:127132020:+ chr8:128084939-128239786:- chr8:128144265:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none WD_domain__G-beta_repeat(44%)| WD40(11%)| 5 4 24 1160 51 ENST00000707108.1 unknown downstream upstream duplicates(4),mismatches(1) ACGTGGATGCTGAT___GCTGATGAAAACTTTTACACTTGTGCATGGACCTATGATAGCAATACGAGCCATCCTCTGCTGGCTGTAGCTGGATCTAGAGGCATAATTAGGATAATAAATCCTATAACAATGCAGTGTATAAAG___CACTATGTTGGCCATGGAAATGCTATCAATGAGCTGAAATTCCATCCAAGAGATCCAAATCTTCTCtTGTCAGTAAGTAAAG|GGACATGGATGAAGCTGGAAACCATCATCTTCAGCAAACTTACACAGGAACAGAAAACAAAACACCACATGTTCTCACTCATAAGTGGGAGCTGAAGAATGAGAACACATGGATACAGGGAGGAGAACATCACACACTGGGGCCTGTCGGAGGGTGGGGGGTTAGGGAAGGGATAGCATTAGGAG VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK|gtwmkletiifskltqeqktkhhmfslisgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 24122 IPO7::STK33 ENSG00000205339.10::ENSG00000130413.16 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IPO7 ENSG00000205339.10 protein_coding + + chr11:9384652-9448127:+ chr11:9440661:+ chr11:9406199-9469674:+ chr11:9462208:+ STK33 ENSG00000130413.16 protein_coding - + chr11:8391868-8594289:- chr11:8416116:+ chr11:8413415-8615836:- chr11:8437663:+ chr11:9441567,chr11:9441565 chr11:8399398,chr11:8399385 NA NA chr11:9463114,chr11:9463112 chr11:8420945,chr11:8420932 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cse1(100%),Importin-beta_N-terminal_domain(100%)| Cse1(100%),IBN_N(100%)| 11 3 10 607 48 ENST00000379719.8 unknown downstream upstream duplicates(3),mismatches(1) TCTCGGACTCTGTGCTCTTATTGATATGGAACAGATACCCCAAGTTTTAAATCAGGTTTCTGGACAGATTTTGCCGGCTTTTATCCTTTTATTTAACGGATTGAAAAGAGCATATGCCTGCCATGCAGAACATGAGAATGACAGTGATGATGATGATGAAGCTGAAGATGATGATGAAACCG___AGGAACTGGGGAGTGATGAAGATGATATTGATGAAGATGGGCAAGAATATTTGGAGATTCTGGCTAAGCAGGCTGGTGAAGATGGAGATGATGAAGATTGGGAAGAAGATGATGCTGAAGAGACTGCTCTGGAAGGCTATTCCACAATCATTGATGATGAAGATAACCCTGTTGATGAGTATCAGATATTTAAAGCTATCTTTCAAA|GGAATTAGCCAACAAAGATGAAAGTGCAGCAAAGAAAATAAAAGTGATAATGCCGAAAGTGAAAACTGAATAAAATACGAATGGAGTAACAGAAGAAATTGCTGACTGGGAATGCTGACACTACCACCGTTCAACAGAGTATTTGCCAAGGCATAAAAAAGATGCTCCCTCTGTCTTATAAGTTATATGGTAAGAAGAAG___GGTCTCACATTGTCACCCAGGCTGGAGTGCAGTAATGCAATCACGAGTCAC LGLCALIDMEQIPQVLNQVSGQILPAFILLFNGLKRAYACHAEHENDSDDDDEAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDEDWEEDDAEETALEGYSTIIDDEDNPVDEYQIFKAIFQ|rn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24132 PVT1::POU5F1B ENSG00000249859.14::ENSG00000212993.6 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4091 TRUE 1547 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127414888:+ chr8:128334428-128432311:+ chr8:128427133:+ chr8:127878272,chr8:127878272 chr8:127368723,chr8:127368720 NA NA chr8:128890518,chr8:128890518 chr8:128380969,chr8:128380966 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 1 0 15 250 266 ENST00000651587.1 ENST00000645438.1 downstream upstream duplicates(2),mismatches(1) GTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGCTTTATGGAAAAGCCCACATGGTGAGCAACTGAGGCCTCCTACCAACAGCCAACAAGAAACCGGGGCCTTTGCCAACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTtCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24133 PVT1::POU5F1B ENSG00000249859.14::ENSG00000212993.6 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4091 TRUE 1547 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127414888:+ chr8:128334428-128432311:+ chr8:128427133:+ chr8:127878272,chr8:127878272 chr8:127368723,chr8:127368720 NA NA chr8:128890518,chr8:128890518 chr8:128380969,chr8:128380966 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication medium none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),Pou(100%) 2 3 15 3048 266 ENST00000651587.1 ENST00000645438.1 downstream upstream duplicates(1),mismatches(1) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTCATTCTCTCTGGGTGAATCCAGCTGACATGTTGTGAGGACACTCAAGCAGCTTTATGGAAAAGCCCACATGGTGAGCAACTGAGGCCTCCTACCAACAGCCAACAAGAAACCGGGGCCTTTGCCAACAGCCAA___GAAATAAGAATCAGAAAGAAGGACACACCATTtCATAGCACAGAACACAAGTAGATGGCTCCCATGAAGAATCTAGCATCATGGTATGGCAGAAGCAGAATGGACTCAGGAATCATGGTGCCTACACTGGAATTTCAGATCGGCCACTGACACAATGGACACATTATTCAACATTTCCAAATCTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24135 SLC43A2::RPA1 ENSG00000167703.15::ENSG00000132383.12 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1590802:- chr17:1472562-1532180:- chr17:1494096:- RPA1 ENSG00000132383.12 protein_coding + - chr17:1829702-1900082:+ chr17:1892686:- chr17:1732996-1803376:+ chr17:1795980:- chr17:1586452,chr17:1586449 chr17:1895103,chr17:1895102 NA NA chr17:1489746,chr17:1489743 chr17:1798397,chr17:1798396 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Major_Facilitator_Superfamily(89%)| MFS_1(84%)| 2 1 7 140 8 ENST00000301335.10 unknown upstream downstream duplicates(3),mismatches(1) TGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACCTGGAGGTGAAGTGCCAGCCGGATGCtGCAG___TGGCCCCCTCCTTCATGCACAGCGTGTTCAGCCCCATCCTGCTGCTCAGCCTGGTCACCATGTGCGTCACGCAGCTGCGGCTCATCTTCTACATGGGGGCTATGAACAACATCCTCAAGTTCCTGGTCAGCGGCGACCAGAAGACAG|GACAGACCCAGGAACTTGACATACGTGCATTTTAACCAGGATCTGACTCAACTTTTCTGGAAG___TCCTGAGTCGGGCAGGCTTGGTACATGCAGTTCTCTTTGCGAAGATACACCACTGT ALQEGHKLCLSTVDLEVKCQPDAAVAPSFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNNILKFLVSGDQKT|gqtqeldiraf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24140 SENP2::MAP3K13 ENSG00000163904.13::ENSG00000073803.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2247 FALSE NA FALSE NA SENP2 ENSG00000163904.13 protein_coding + + chr3:185582496-185633551:+ chr3:185609350:+ chr3:185300284-185351339:+ chr3:185327138:+ MAP3K13 ENSG00000073803.14 protein_coding + + chr3:185282941-185489094:+ chr3:185487608:+ chr3:185000729-185206882:+ chr3:185205396:+ chr3:185609855 chr3:185483575 NA NA chr3:185327643 chr3:185201363 NA NA sense sense unknown CDS/splice-site 3'UTR duplication high none none none 3 2 3 318 19 ENST00000413407.5 ENST00000265026.8 downstream upstream duplicates(3),mismatches(1) TTCTGCTTGTAATGGAACACGGAATGcGGCCCCTTCcGtAGAG___GTTCTGGATCCTGGAACAACATGCTGAAACTGG___GTAATAAtctcCCaAATGGAA...CGAGATCAGCCACGCAGAGTCCTGCCTTCCTTTGG___TTTTACTTTGAACTCAGAAGGCTGTAATAGAAGACCAGGTGGCCGTCGCCATAGCAAAGG...CAGAGATGATTTCTGAAGAGAGTGGCAAGGGTCTGAGGCGTCCCCATTGTACTGTGGAGGAG___GGTGTTCAAAAAGAGGAAAGAGAGAAGTACCGAAAGTTATTGGAACGACTTAAAGAAAGTGGTCATGGAAACTCTGTCTGTCCTGTAACTTCAAATTATCACAG|TCCCACTTGAACTTCCTGGAACTGAATTCTCCAGAACATAATATTTATAATCCATAGAATTCCTGCCCTGCTCTGCAGTAGAGTGTGCTATGTTTTGTTTTCCCACTGAGCCAGAAGCCGAAATATTATcCTACCACTTACCACCATCTACCACCTCCAAGACCAAGACCAACATTATGTATTGAGCATCGTATCTTTCCTACTGAGCCTAGACACAGCCTCAGAACCTCTCAACATAGCACTTGGAGCAACAATTGCCGCTTGATTGGAATTGCCATTTGAGCTTGAGTTAGCCCCAATGGCAGAACGACAGGCTCGCACTAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 13 TKL MLK LZK O43283 TRUE Breast,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE mitogen-activated protein kinase kinase kinase 13 1 Yes breast epithelial oncogene, TSG frameshift 24141 C7orf50::CASC8 ENSG00000146540.15::ENSG00000246228.7 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1127257:- chr7:1036622-1177896:- chr7:1166893:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 2 1 4 378 216 ENST00000357429.10 ENST00000502082.5 upstream downstream none GCGCAGGTGGGCGCAG___GATGGCAAAACAGAAGAGAAAAGTTCCTGAAGTGACAGAGAAAAAGAACAAAAAGCTGAAGAAGGCGTCAGCAGAGGGGCCACTGCTGGGCCCTGAGGCTGCACCAAGTGGCGAAGGAGCCGGCTCCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAAT MAKQKRKVPEVTEKKNKKLKKASAEGPLLGPEAAPSGEGAGSK|varklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24142 CACNA2D4::WDR43 ENSG00000151062.15::ENSG00000163811.12 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNA2D4 ENSG00000151062.15 protein_coding - - chr12:1791963-1918666:- chr12:1795752:- chr12:1901129-2027832:- chr12:1904918:- WDR43 ENSG00000163811.12 protein_coding + + chr2:28894667-28948219:+ chr2:28912590:+ chr2:29117533-29171085:+ chr2:29135456:+ chr12:1795749 chr2:28908379 chr12:1795759 chr2:28908373 chr12:1904915 chr2:29131245 chr12:1904925 chr2:29131239 sense sense unknown CDS CDS/splice-site translocation high none Neuronal_voltage-dependent_calcium_channel_alpha_2acd(85%),VWA_N-terminal(100%),von_Willebrand_factor_type_A_domain(100%)|Dip2/Utp12_Family(100%),WD_domain__G-beta_repeat(48%) LRRNT(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%),VGCC_alpha2(96%),VWA(100%),VWA_2(100%),VWA_3(100%),VWA_N(100%)|Utp12(100%),WD40(48%) 0 1 5 5 527 ENST00000588896.1 ENST00000407426.8 upstream upstream mismatches(1) TGCTAGGAAAGGAAATGCAGCAGCAAAGGCTTGTGAGCAAAGCCAGTAGGACTGAGCCATCTGCCAGGCCCGTTCCCTTAGCTGCCCCGACCCGCCCTGCCTCATGGTTCCGGGCTTCCCTGCCACCCTAACTCCACACTAAAGTCTCCAGAAGTTCCTTCCCTAGAAGCCCTTCTCGTGGTCGCCACGGAGCCATCCTCGACTCCCTTTCTTTGCTGCAGGGTATTTGTGGTGCAGCAGATTCaCAACA|CAAATGGAAAGGgGACAATAGCAGTGTCAGTTCCCTATGTATCAGCCCAGATGGAAAGATGTTGCTTTCAGCTGGTCGAACAATCAAACTATGGGTTTTGGAGACCAAAGAAGTCTACAGG___CATTTCACAGGACATGCAACGCCAGTTTCGTCACTGATGTTCACTACCATCAGACCTCCTAATGAGAGCCAGCCCTTTGATGGAATTACAGGTCTTTATTTCTTATCTGGAGCAGTACATGACCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24145 CCDC91::PPFIBP1 ENSG00000123106.11::ENSG00000110841.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28307749:+ chr12:28286182-28734444:+ chr12:28460682:+ PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27676428:+ chr12:27676364-27848497:+ chr12:27829361:+ chr12:28321225 chr12:27675633 NA NA chr12:28474158 chr12:27828566 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SAM_domain_(Sterile_alpha_motif)(100%) |SAM_1(100%),SAM_2(100%) 0 2 3 535 290 ENST00000539107.5 ENST00000537927.5 downstream upstream duplicates(2) TGTATCTAACATACAGCTTCAGCAAAAAATTTCAAGTCTGGAGATTAAACTCAAAGTATCTGAAGAAGAAAAACAGAGAATTAAACAG___GATGTGGAATCATTGATGGAAAAGCATAATGTCTTAGAAAAAGGCTTTCTAAAAGAAAAAGAGCAAGAGGCCATTTCTTTTCAAGATAGATACAAAGAACTTCAG|GACAGAGCTCCGGCAGAAAGCAGGCCATTTGGGACCCTTCCTCCCAGGCCCCCAGGGCAGGACACCTCCATGGATGACAACCCCTTCGGCACTCGAAAAGTCAGATCTTCCTTTGGCCGGGGCTTTTTTAAAATCAAAAGTAACAAGAGAACAGCAAGTGCACCAAACTTAG___CTGAAACAGAAAAAGAGACAGCAGAGCACCTAGATCTGGCTGGTGCTTCTTCTCGGCCAAA VSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQ|DRAPAESRPFGTLPPRPPGQDTSMDDNPFGTRKVRSSFGRGFFKIKSNKRTASAPNLAETEKETAEHLDLAGASSRP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation 24148 LRRC23::CACNA1C ENSG00000010626.15::ENSG00000151067.23 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC23 ENSG00000010626.15 protein_coding + + chr12:6873569-6914241:+ chr12:6873781:+ chr12:6982733-7023405:+ chr12:6982945:+ CACNA1C ENSG00000151067.23 protein_coding + - chr12:1970772-2697950:+ chr12:2161169:- chr12:2079938-2807116:+ chr12:2270335:- chr12:6880272,chr12:6880271,chr12:6880270 chr12:2165247,chr12:2165248,chr12:2165248 NA NA chr12:6989436,chr12:6989435,chr12:6989434 chr12:2274413,chr12:2274414,chr12:2274414 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 0 2 2 189 11 ENST00000433346.5 unknown downstream downstream duplicates(1),mismappers(1) CGGCAGAGTCCGCACCCGGGCAGGCCCATCTCAGAATTAACGCTTTGATGGCATCACCGCGTCGGGAATCCCTGGGGATGGTGTTCTCCACCGTCAAGACCTTTGAGCCGCCTGAGCGACTAACTCCTGCGCCCCTGAGG|ATAGACAGCTATCAACTCAAGCATCTGTTCAGCAAAGGATAACCAGAGCTAGCCGGGTGCGGTGGCTCACGCCTGTTATCCCAACACTTTGGGAGGCCGAGGAGGGTGGATCACGAGGCCAGAAGTTCGAG...ACGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCAAGATCAAGCCACTGCACTCCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24154 PCAT1::YTHDF3 ENSG00000253438.5::ENSG00000185728.17 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2248 FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339435:+ chr8:127568568-128431295:+ chr8:128351680:+ YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63209683:+ chr8:64081112-64125344:+ chr8:64122241:+ chr8:127358653,chr8:127358604,chr8:127358644,chr8:127358650 chr8:63205384,chr8:63205380,chr8:63205374,chr8:63205378 NA NA chr8:128370899,chr8:128370850,chr8:128370890,chr8:128370896 chr8:64117942,chr8:64117938,chr8:64117932,chr8:64117936 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none none 2 7 5 14 1653 ENST00000644021.1 ENST00000617200.1 downstream upstream duplicates(1) GCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|GAGAGAAATAGAAACAAACAATAACCGTATGAAGATGTCCTGTTAAATTTACAACACTAACGATGTAGACTCTGGAAATGCCTAATAAGTCAAAGAAGACGTATTAAAGCTCTTTTCTGCTTAAGGTGACATCTTTGAACACTTTAACACAAAGTTGACTCTTCTCGTAATGGTTTTCATCAGCGCATCTGCCCTTATACTCTTCACCAAACACACTTGAGAACTGTAACTTCGTCAAGCACTTTCTGTCCTGAAGCTTTTACCAGTATCTGCTGTCTTTTGTAATTATGCATCCTAGCTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24155 POU5F1B::YTHDF3 ENSG00000212993.6::ENSG00000185728.17 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA POU5F1B ENSG00000212993.6 protein_coding + + chr8:127322183-127420066:+ chr8:127339435:+ chr8:128334428-128432311:+ chr8:128351680:+ YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63209683:+ chr8:64081112-64125344:+ chr8:64122241:+ chr8:127358653,chr8:127358604,chr8:127358644,chr8:127358650 chr8:63205384,chr8:63205380,chr8:63205374,chr8:63205378 NA NA chr8:128370899,chr8:128370850,chr8:128370890,chr8:128370896 chr8:64117942,chr8:64117938,chr8:64117932,chr8:64117936 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 2 7 5 14 1653 ENST00000645438.1 ENST00000617200.1 downstream upstream duplicates(1) GCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAGCCTCAG___AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|GAGAGAAATAGAAACAAACAATAACCGTATGAAGATGTCCTGTTAAATTTACAACACTAACGATGTAGACTCTGGAAATGCCTAATAAGTCAAAGAAGACGTATTAAAGCTCTTTTCTGCTTAAGGTGACATCTTTGAACACTTTAACACAAAGTTGACTCTTCTCGTAATGGTTTTCATCAGCGCATCTGCCCTTATACTCTTCACCAAACACACTTGAGAACTGTAACTTCGTCAAGCACTTTCTGTCCTGAAGCTTTTACCAGTATCTGCTGTCTTTTGTAATTATGCATCCTAGCTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24157 SLC11A2::LETMD1 ENSG00000110911.17::ENSG00000050426.16 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SLC11A2 ENSG00000110911.17 protein_coding - - chr12:50979401-51028566:- chr12:51004788:- chr12:51373184-51422349:- chr12:51398571:- LETMD1 ENSG00000050426.16 protein_coding + + chr12:51047962-51060424:+ chr12:51056350:+ chr12:51441745-51454207:+ chr12:51450133:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Natural_resistance-associated_macrophage_protein(13%)|LETM1-like__RBD(32%) Nramp(4%)|LETM1(29%) 0 1 0 150 335 ENST00000547688.7 ENST00000262055.9 upstream upstream none CTGGGCTGCATCTTGCTGAAGTATGTCACCGTCAGTATCCCAAG|AAAGCCTTGAGCCGGGCCATGCTTCTCACATCTTACCTGCCTCCTCCCTTGTTGAG...ATTCCTCTCACAGCTAGAACTGAAACAAACCCTCTTGCTAGGGGTGGTCCGTGTGAGGTGTCATCCTGTCCCCCTCATAATTtCTAATAGCTGGAACTGGC GLHLAEVCHRQYPK|KALSRAMLLTSYLPPPLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24167 PVT1::CLVS1 ENSG00000249859.14::ENSG00000177182.11 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4096 TRUE 1548 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CLVS1 ENSG00000177182.11 protein_coding + + chr8:61057158-61501645:+ chr8:61454141:+ chr8:61969717-62414204:+ chr8:62366700:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |CRAL/TRIO_domain(42%) |CRAL_TRIO(2%),CRAL_TRIO_2(2%) 2 1 1 3048 1544 ENST00000651587.1 ENST00000519846.5 downstream upstream none CTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GACAGCTTTCCTGCCCGCTTTGGAGGAGTCCACTTTGTCAACCAGCCCTGGTACATTCATGCCCTCTACACACTCATCAAGCCATTTCTTAAAGACAAGACCAGGAAACGG___ATTTTCCTGCATGGAAACAATTTAAACAGCC...TTGGGCCCGGACGTTACTCGGTCCCGACTACAGCGATGAAAATGACTATACTCACACATCCTATAATGCAATGCACGTGAAGCATACGTCCTCGAATCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24168 PVT1::CLVS1 ENSG00000249859.14::ENSG00000177182.11 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4096 TRUE 1548 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CLVS1 ENSG00000177182.11 protein_coding + + chr8:61057158-61501645:+ chr8:61376605:+ chr8:61969717-62414204:+ chr8:62289164:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |CRAL/TRIO_domain(81%) |CRAL_TRIO(51%),CRAL_TRIO_2(51%) 1 1 1 3048 2014 ENST00000651587.1 ENST00000519846.5 downstream upstream duplicates(1) GAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GAACTCCTTCACAGACATCCTTCGTGCCATCCTGCTG...TGGCCATTGAAGGGTTGCAG___GACAGCTTTCCTGCCCGCTTTGGAGGAGTCCACTTTGTCAACCAGCCCTGGTACATTCATGCCCTCTACACACTCATCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24176 NKAIN3::PCAT1 ENSG00000185942.13::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4098 TRUE 1549 NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62589794:+ chr8:63161150-63926559:+ chr8:63502353:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:62603961,chr8:62603965,chr8:62622419,chr8:62622419,chr8:62622418,chr8:62622413,chr8:62622416 chr8:126692841,chr8:126692848,chr8:127276402,chr8:127276403,chr8:127276404,chr8:127276404,chr8:127276404 NA NA chr8:63516520,chr8:63516524,chr8:63534978,chr8:63534978,chr8:63534977,chr8:63534972,chr8:63534975 chr8:127705086,chr8:127705093,chr8:128288647,chr8:128288648,chr8:128288649,chr8:128288649,chr8:128288649 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none Na_K-Atpase_Interacting_protein(45%)| NKAIN(45%)| 0 1 1 5 9 ENST00000674864.1 ENST00000642795.1 downstream upstream duplicates(1) ATACAGTGTGGACTGCCCTCTGGGTCACCTGGAATGTGTTCATTATCTGCTTTTATTTGGAAGTAGGTGGACTCTCAAAG|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAA TVWTALWVTWNVFIICFYLEVGGLSK|tqsaq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24177 NKAIN3::PCAT1 ENSG00000185942.13::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4098 TRUE 1549 NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62589794:+ chr8:63161150-63926559:+ chr8:63502353:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:62603961,chr8:62603965,chr8:62622419,chr8:62622419,chr8:62622418,chr8:62622413,chr8:62622416 chr8:126692841,chr8:126692848,chr8:127276402,chr8:127276403,chr8:127276404,chr8:127276404,chr8:127276404 NA NA chr8:63516520,chr8:63516524,chr8:63534978,chr8:63534978,chr8:63534977,chr8:63534972,chr8:63534975 chr8:127705086,chr8:127705093,chr8:128288647,chr8:128288648,chr8:128288649,chr8:128288649,chr8:128288649 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none Na_K-Atpase_Interacting_protein(45%)| NKAIN(45%)| 0 1 0 5 78 ENST00000674864.1 ENST00000646670.1 downstream upstream none GTGTGGACTGCCCTCTGGGTCACCTGGAATGTGTTCATTATCTGCTTTTATTTGGAAGTAGGTGGACTCTCAAAG|AGGTGCTTATTTAGCAAATTCAACCT...ATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAG VWTALWVTWNVFIICFYLEVGGLSK|rclfskfn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24178 PCAT1::NKAIN3 ENSG00000253438.5::ENSG00000185942.13 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4099 TRUE 1550 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126832792:+ chr8:127568568-128431295:+ chr8:127845037:+ NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62965354:+ chr8:63161150-63926559:+ chr8:63877913:+ chr8:126895744,chr8:126834579,chr8:126834540,chr8:127405899,chr8:127405896,chr8:127405903,chr8:127405905,chr8:127405907,chr8:127405908,chr8:127405910,chr8:127405911,chr8:127405912,chr8:127405913,chr8:127405914,chr8:127405915,chr8:127405918,chr8:127405919,chr8:127405921,chr8:127405924,chr8:127405925,chr8:127405926,chr8:127405927,chr8:127405931,chr8:127405933,chr8:127405937,chr8:127405941,chr8:127405942,chr8:127405946,chr8:127405949,chr8:127405953,chr8:127405958,chr8:127405959,chr8:127405960,chr8:127405957,chr8:127405963,chr8:127405964,chr8:127405965,chr8:127405898,chr8:126895747,chr8:126834580,chr8:126834577 chr8:62312494,chr8:62961248,chr8:62961248,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62526935,chr8:62312500,chr8:62961246,chr8:62961246 NA NA chr8:127907989,chr8:127846824,chr8:127846785,chr8:128418144,chr8:128418141,chr8:128418148,chr8:128418150,chr8:128418152,chr8:128418153,chr8:128418155,chr8:128418156,chr8:128418157,chr8:128418158,chr8:128418159,chr8:128418160,chr8:128418163,chr8:128418164,chr8:128418166,chr8:128418169,chr8:128418170,chr8:128418171,chr8:128418172,chr8:128418176,chr8:128418178,chr8:128418182,chr8:128418186,chr8:128418187,chr8:128418191,chr8:128418194,chr8:128418198,chr8:128418203,chr8:128418204,chr8:128418205,chr8:128418202,chr8:128418208,chr8:128418209,chr8:128418210,chr8:128418143,chr8:127907992,chr8:127846825,chr8:127846822 chr8:63225053,chr8:63873807,chr8:63873807,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63439494,chr8:63225059,chr8:63873805,chr8:63873805 NA NA sense sense unknown intron CDS/splice-site duplication low none |Na_K-Atpase_Interacting_protein(0%) |NKAIN(4%) 0 1 0 1 3 unknown ENST00000623646.3 downstream upstream none AAGGACCGCACAAGTTTATATGCAAAAACACA|GTCGAAATAAGTAATGACATTGAACCAGAAATGCGGCTGCTGAACTTGACTTAGGGAGCAAAGGACCATTGACgGCGCGCCTCGGTGGATCCGcCCCGCCTGACATTCCTTCCAGAGGCTAGACTGTGCTTCCTGGCTTTCCCACGAATCATGGAGCATTTTGGTCACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24179 PCAT1::NKAIN3 ENSG00000253438.5::ENSG00000185942.13 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4099 TRUE 1550 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339435:+ chr8:127568568-128431295:+ chr8:128351680:+ NKAIN3 ENSG00000185942.13 protein_coding + - chr8:62248591-63014000:+ chr8:62993232:- chr8:63161150-63926559:+ chr8:63905791:- chr8:127342285,chr8:127342286,chr8:127342280 chr8:63013111,chr8:63013111,chr8:63013111 NA NA chr8:128354531,chr8:128354532,chr8:128354526 chr8:63925670,chr8:63925670,chr8:63925670 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' low none none none 0 1 0 14 2 ENST00000646670.1 unknown downstream downstream none GGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG|CTAGATCCTGTTTTTCTGCTTTCCTTGCTGTCTGGTGGGATACTATGATTATGTTCTGGCCTGAGGAATGTGGGCAGAAAGAG___AGGCAAAAAAACAAAACAAAACAAAACCTTCAGGATCCTAGGCTTTCACAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24189 DOCK3::RNF123 ENSG00000088538.13::ENSG00000164068.16 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOCK3 ENSG00000088538.13 protein_coding + + chr3:50674927-51384198:+ chr3:50778758:+ chr3:50712358-51421629:+ chr3:50816189:+ RNF123 ENSG00000164068.16 protein_coding + + chr3:49689538-49721529:+ chr3:49720800:+ chr3:49726971-49758962:+ chr3:49758233:+ chr3:50831734 chr3:49719258 NA NA chr3:50869165 chr3:49756691 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Variant_SH3_domain(59%)|Zinc_finger__C3HC4_type_(RING_finger)(100%) SH3_2(48%)|zf-C3HC4_3(100%) 0 2 0 49 155 ENST00000266037.10 ENST00000327697.11 downstream upstream none CTCAAGGGTTGGTCTTAGAAATAGGAGAAACAGTCCAGATTCTTGAAAAATGTGAAG|ATGCGGATTATATCAGTGCCGATGAGCTGGCCCAAGTGGAACAGATGCTGGCGCACCTGACCTCTGCATCTGCCCAGGCAGCAGCTGCCTCCCTG___CCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCCTG...TAAGTGGGCCCCACAGCTTGGTGGTGGGGAGAGCAGTAGGTACATGCAGGGCAGTCCTCATCCCCTCCCCTGTTGTAGAGCCTGTATCAACCAGCACCTGA QGLVLEIGETVQILEKCE|dADYISADELAQVEQMLAHLTSASAQAAAASLPTSEEDLCPICYAHPISAVFQP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4787 chr3:50675080-50675163:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24211 CTAG2::G6PD ENSG00000126890.14::ENSG00000160211.20 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTAG2 ENSG00000126890.14 protein_coding - - chrX:154651972-154653579:- chrX:154652497:- chrX:153880246-153881853:- chrX:153880771:- G6PD ENSG00000160211.20 protein_coding - + chrX:154517825-154547572:- chrX:154522605:+ chrX:153746149-153775787:- chrX:153750824:+ chrX:154652349,chrX:154652363,chrX:154652351 chrX:154522081,chrX:154522081,chrX:154522079 NA NA chrX:153880623,chrX:153880637,chrX:153880625 chrX:153750295,chrX:153750295,chrX:153750293 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Transcription_factor_Pcc1(60%)| Pcc1(71%)| 206 289 300 991 944 ENST00000369585.4 unknown upstream upstream duplicates(202),low_entropy(1),mismatches(76) GAAGGCCaGGGCACAGGGGGTTCGACGGGCGATGCTGATGGCCCAGGAGGCCCTGGCATTCCTGATGGCCCAGGGGGCAATGCTGGCGGCCCAGGAGAGGCGGG?GCCACGGGCGGCAGAGG?CCCCGGGGCGCAGGGGCAGCAAGGGCCTCGGGGCCGAGAGGAGGCGCCCCGCGGGGTCCGCATGGCGGTGCCGCTTCTGCGCAGGATGGAAGGTGCCCCTGCGGGGCCAGGAGGCCGGACAGCCGCCTGCTTcAGTT___GCACATCACGATGCCTTTCTCGTCGCCCATGGAAGCGGAGCTGGTCCGaAGGATCCTGTCCCGGGATGCCGCACCtCTCCCCCGACCAGGGGCGGTTCTGAAGGACTTCACCGTGTCCGGCAACCTACTGTTTAT|ACCTGTAACTTCAGCCTGGAGTTGAGCAGAAACATGGCTTCCTTGTCTTCAAGTCATTCTTGGGCTTCAGAGCGAAGATGCTGGACCTTTGAACCAACAAGCAGGTTACTGGTACCTTTGCCCTGAGAATACGCTGGTGGTGCTTGTGGCTGCAGTGTTTACCCCGAGATAACTTTGCCATGAAGTATCTTCCTTTTATTATTTTTTCATCGCTCTAGTATATCGACTTTGGAAACAAAA EGqGTGGSTGDADGPGGPGIPDGPGGNAGGPGEAGATGGRGPRGAGAARASGPRGGAPRGPHGGAASAQDGRCPCGARRPDSRLLqLHITMPFSSPMEAELVRRILSRDAAPLPRPGAVLKDFTVSGNLLFi|pvtsaws* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24212 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808169:- chr8:129646445-130696016:- chr8:129820415:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 234 253 298 15395 2173 ENST00000323571.9 ENST00000675388.1 downstream downstream duplicates(190),low_entropy(6),mismappers(3),mismatches(115),multimappers(6) TGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG MPIPPPPPPPPGPPPPPTFHQ|snfkalthlvsddvrlshrrlpsshcyliww NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24213 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128816694:- chr8:129646445-130696016:- chr8:129828940:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 45 66 298 15395 367 ENST00000323571.9 ENST00000675388.1 downstream downstream duplicates(77),mismatches(71),multimappers(2) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GTACTGAAGGCTTTGATGGGAGAAAGCATCTCATTTCCCATTTCTGAG___TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG MPIPPPPPPPPGPPPPPTFHQ|vlkalmgesisfpisesnfkalthlvsddvrlshrrlpsshcyliww NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24214 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128654063:- chr8:129646445-130696016:- chr8:129666309:- chr17:40282551,chr17:40283194,chr17:40283194 chr8:128674601,chr8:128750643,chr8:128751152 NA NA chr17:38438803,chr17:38439446,chr17:38439446 chr8:129686847,chr8:129762889,chr8:129763398 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 68 52 240 15395 1622 ENST00000323571.9 ENST00000643616.1 downstream downstream duplicates(106),low_entropy(13),mismatches(67),multimappers(6) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCTTGACCAGTCCTGCAGGCCAGTAAAATCTGCATTGACAACCTGGATCAACTTAAGAAGAAAGTGATCAGAGTTAGGAACACATTCAGAACCATAAGACAGCAAGAATTCTTCAAAGAAACGAATTGTTTGTCCTGGAGACAAGACTATTTGTGTCATTGTTTTCAAATATGTAAATAATTTTTATGTAAAAAAAAGA MPIPPPPPPPPGPPPPPTFHQ|svfkfyhqgllrtsltspagq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24215 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128827701:- chr8:129646445-130696016:- chr8:129839947:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 21 4 297 15395 308 ENST00000323571.9 ENST00000676407.1 downstream downstream duplicates(55),mismappers(1),mismatches(64),multimappers(2) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|CCAAGAAGCCTTAATTAACATTTGTTAAGAACTAGAAGATGCATCCCACTCTTTACTTTTTATTCCTAATTCTCATCCATAACTGAAAAGGTTAACATTTCAAATGGGATTACAGAATAGTGATGTCACTTTCCTATATTCATATACCAAGTCAATGTTTAAAAATAGCTTATGTTCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGT MPIPPPPPPPPGPPPPPTFHQ|prsln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24216 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128814538:- chr8:129646445-130696016:- chr8:129826784:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 15 7 298 15395 308 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(55),mismatches(55),multimappers(2) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|AAACAGAAAAATAAGACCTGAATAAAGCCCATGACAATCAATTTGAAACTACTCTCAAAACCAAGAGGCCAACTGGAG___...CAGAGCTTTTTTTTCTCACATTTCTG...AGTCCAACTTCAAAGCACTG?CA...GTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG MPIPPPPPPPPGPPPPPTFHQ|kqknkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24217 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128663240:- chr8:129646445-130696016:- chr8:129675486:- chr17:40282551,chr17:40283194,chr17:40283194 chr8:128674601,chr8:128750643,chr8:128751152 NA NA chr17:38438803,chr17:38439446,chr17:38439446 chr8:129686847,chr8:129762889,chr8:129763398 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 15 5 279 15395 330 ENST00000323571.9 ENST00000675388.1 downstream downstream duplicates(51),mismatches(37),multimappers(6) GCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|ATGAGGCCCAAAATAGAGGTAGAGAGAGATTCAAAAAATCTGGGAGAACACGAGGAATGTAAAAAGACAGTGAGTGCCTGGTCAGTATGGCAGACGAGACAGCCACGGAGAAGACCCCAGCCAGTGAAAAGTTAACTTTCAAGA___TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGG MPIPPPPPPPPGPPPPPTFHQ|mrpkieverdsknlgeheeckktvsawsvwqtrqprrrpqpvks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24218 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128721628:- chr8:129646445-130696016:- chr8:129733874:- chr17:40283194,chr17:40283194 chr8:128750643,chr8:128751152 NA NA chr17:38439446,chr17:38439446 chr8:129762889,chr8:129763398 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 4 10 295 15395 1594 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(35),mismatches(53),multimappers(5) GCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TgAGTGGGAGCCAGCAGCTGACCTTCCAGCAGATGAGAGCAGGGAGTCCAACGTTCTCCTTCAGTAAGTCTATTGTGAATGGACTGTGCAACCAGAGTATCCCTGTTCAGAATCCCAGCATGTGTATCCAAATCTGACATCCATTTCCAGGAGC...___TCACTTATGCTTGAGGATAAAGACATCAGCCCGAAGGGGGAAAAAGCAG...AATTTGTAAGATTTGAAAAAG MPIPPPPPPPPGPPPPPTFHQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24219 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128721265:- chr8:129646445-130696016:- chr8:129733511:- chr17:40283194,chr17:40283194 chr8:128750643,chr8:128751152 NA NA chr17:38439446,chr17:38439446 chr8:129762889,chr8:129763398 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 8 4 294 15395 1765 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(35),mismappers(1),mismatches(47),multimappers(5) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TCACTTATGCTTGAGGATAAAGACATCAGCCCGAAGGGGGAAAAAGCAGATGTGGAAAAAATTTGTAAGATTTGAAAAAGTGCCC-TGTATTAAATTTCTGATTCTGCTGTGAAGGATCTTCTCATGATGAGTGAAAGGAAGGAAAACCCACAAAGTCAACgTCTTGGGTGGGTGGAAGGAAAGAATGG MPIPPPPPPPPGPPPPPTFHQ|slmledkdispkgekadvekicki* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24220 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808220:- chr8:129646445-130696016:- chr8:129820466:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 298 15395 451 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(49),mismatches(52),multimappers(2) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|CAGAGCTTTTTTTTCTCACATTTCTGGAACCTGTGTCTGGAACCTGGGAAGTCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG___TCAGTTTTCAAGTTCTATCACCAA MPIPPPPPPPPGPPPPPTFHQ|qsfffshfwnlclepgksnfkalthlvsddvrlshrrlpsshcyliwwksvfkfyh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24221 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128828094:- chr8:129646445-130696016:- chr8:129840340:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 0 298 15395 297 ENST00000323571.9 ENST00000676407.1 downstream downstream duplicates(46),mismappers(1),mismatches(56),multimappers(2) GAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TACAGGAAGCAGATTGTGGGGAAAATGGATG MPIPPPPPPPPGPPPPPTFHQ|yrkqivgkmd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24222 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128816694:- chr8:129646445-130696016:- chr8:129828940:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 2 1 57 15726 367 ENST00000323571.9 ENST00000675388.1 downstream downstream duplicates(16),mismatches(31) GGTGGGAGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|GTACTGAAGGCTTTGATGGGAGAAAGCATCTCATTTCCCATTTCTGAG___AAACAGAAAAATAAGACCTGAATAAAGCCCATGACAATCAATTTGAAACTAC...___TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTT...AATTGAATGGAAATACTTTTTCTCTATTACtTGTGCTAAGTAAAATTAAAACTCTGGATATTGTACATAAAGCAAGCATAAGAAGACTCTGAGCAGACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24223 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128814538:- chr8:129646445-130696016:- chr8:129826784:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 1 0 55 15726 308 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(15),mismatches(30) GGTGGGAGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|AAACAGAAAAATAAGACCTGAATAAAGCCCATGACAATCAATTTGAAACTACTCTCAAAACCAAGAGGCCAACTGGAG___TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24224 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808220:- chr8:129646445-130696016:- chr8:129820466:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 1 53 15726 451 ENST00000323571.9 ENST00000676248.1 downstream downstream duplicates(14),mismatches(29) GGTGGGAGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|CAGAGCTTTTTTTTCTCACATTTCTGGAACCTGTGTCTGGAACCTGGGAAGTCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG___TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24225 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808169:- chr8:129646445-130696016:- chr8:129820415:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 2 51 15726 2173 ENST00000323571.9 ENST00000643616.1 downstream downstream duplicates(14),mismatches(29) GGTGGGAGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|TCCAACTTCAAAGCACTGACACATTTGGTGTCTGATGATGTCCGGCTTTCTCATAGACGGCTACCTTCTTCTCACTGTTACCTCATATGGTGGAAG___TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24226 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128654063:- chr8:129646445-130696016:- chr8:129666309:- chr17:40282551,chr17:40283194,chr17:40283194,chr17:40252521,chr17:40245612 chr8:128674601,chr8:128750643,chr8:128751152,chr8:128800565,chr8:128852215 NA NA chr17:38438803,chr17:38439446,chr17:38439446,chr17:38408773,chr17:38401864 chr8:129686847,chr8:129762889,chr8:129763398,chr8:129812811,chr8:129864461 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation medium none none none 0 1 9 15726 1622 ENST00000323571.9 ENST00000643616.1 downstream downstream duplicates(4),mismatches(7) GGGACGGTGGGAGCAGATCCATTTCCGGGTTGGCAAAAGGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCTTGACCAGTCCTGCAGGCCAGTAAAATCTGCATTGACAACCTGGATCAACTTAAGAAGAAAGTGATCAGAGTTAGGAACACATTCAGAACCATAAGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24228 RARA::STARD3 ENSG00000131759.18::ENSG00000131748.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2250 TRUE 4104 TRUE 1552 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39662251:+ chr17:37793343-37820454:+ chr17:37818504:+ chr17:40311677,chr17:40311677,chr17:40311649,chr17:40311651,chr17:40311636,chr17:40311663,chr17:40311677,chr17:40311671,chr17:40311681,chr17:40311660,chr17:40311668,chr17:40311664,chr17:40311663,chr17:40311669,chr17:40311670,chr17:40311678,chr17:40311678,chr17:40311678,chr17:40311678 chr17:39661325,chr17:39661327,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661329,chr17:39661322,chr17:39661329,chr17:39661257,chr17:39661313,chr17:39661313,chr17:39661313,chr17:39661314,chr17:39661317,chr17:39661323,chr17:39661325,chr17:39661327,chr17:39661345 NA NA chr17:38467929,chr17:38467929,chr17:38467901,chr17:38467903,chr17:38467888,chr17:38467915,chr17:38467929,chr17:38467923,chr17:38467933,chr17:38467912,chr17:38467920,chr17:38467916,chr17:38467915,chr17:38467921,chr17:38467922,chr17:38467930,chr17:38467930,chr17:38467930,chr17:38467930 chr17:37817578,chr17:37817580,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817582,chr17:37817575,chr17:37817582,chr17:37817510,chr17:37817566,chr17:37817566,chr17:37817566,chr17:37817567,chr17:37817570,chr17:37817576,chr17:37817578,chr17:37817580,chr17:37817598 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |START_domain(30%) |START(18%) 64 300 81 847 1296 ENST00000254066.10 ENST00000336308.10 downstream upstream duplicates(153),inconsistently_clipped(1),mismatches(12) CCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG|GGGAGAGAATGGCCCTGGGGGCTTCATCGTGCTCAAGTCGGCCAGTAACCCCCGTGTTTGCACCTTTGTCTGGATTCTTAATACAGATCTCAAG___CTGCTCCCTGCATGAGGAGGACACCCAGAGACATGAGACCTACCACCAGCAGGGGCAGTGCCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24229 RARA::STARD3 ENSG00000131759.18::ENSG00000131748.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2251 TRUE 4104 TRUE 1552 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39662804:+ chr17:37793343-37820454:+ chr17:37819057:+ chr17:40311677,chr17:40311677,chr17:40311649,chr17:40311651,chr17:40311636,chr17:40311663,chr17:40311677,chr17:40311671,chr17:40311681,chr17:40311660,chr17:40311668,chr17:40311664,chr17:40311663,chr17:40311669,chr17:40311670,chr17:40311678,chr17:40311678,chr17:40311678,chr17:40311678 chr17:39661325,chr17:39661327,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661329,chr17:39661322,chr17:39661329,chr17:39661257,chr17:39661313,chr17:39661313,chr17:39661313,chr17:39661314,chr17:39661317,chr17:39661323,chr17:39661325,chr17:39661327,chr17:39661345 NA NA chr17:38467929,chr17:38467929,chr17:38467901,chr17:38467903,chr17:38467888,chr17:38467915,chr17:38467929,chr17:38467923,chr17:38467933,chr17:38467912,chr17:38467920,chr17:38467916,chr17:38467915,chr17:38467921,chr17:38467922,chr17:38467930,chr17:38467930,chr17:38467930,chr17:38467930 chr17:37817578,chr17:37817580,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817582,chr17:37817575,chr17:37817582,chr17:37817510,chr17:37817566,chr17:37817566,chr17:37817566,chr17:37817567,chr17:37817570,chr17:37817576,chr17:37817578,chr17:37817580,chr17:37817598 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |START_domain(15%) |START(2%) 6 59 42 847 1238 ENST00000254066.10 ENST00000336308.10 downstream upstream duplicates(36),low_entropy(2),mismatches(1) AGCCTAACCCAGAAGCAGGGGGGAATCCTGAATCGAGCTGAGAGGGCTTCCCCGGTTCTCCTGGGAACCCCATCGGCCCCCTGCCAGCACACACCTGAGCAG|GGCCGCCTGCCCCGGTACCTCATCCACCAGAGCCTCGCGGCCACCATGTTTGAATTTGCCTTTCACCTGCGACAGCGCATCAGCGAGCTGGGGGCCCGGGCGTGACTGTGCCCCCTCCCACCCTGCGGGCCAGGGTCCTGTCGCCACCACTTCCAGAGCCAGAAAGGGTGCCAGTTGGGCTCGCACTGCCCACATGGGACCTGGCCCCAGGCTGTCACCCTCCACCGAGCCACGCAGTGCCTGGAGTTGACTGACTGAGCAGGCTGTGGGGTGGAGCACTGGACTCCGGGGCCCCACTGGCTGGAGGAAGTGGGGTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24230 WIPF2::ENSG00000286266 ENSG00000171475.14::ENSG00000286266.1 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ ENSG00000286266 ENSG00000286266.1 lncRNA + - chr8:127578473-127636867:+ chr8:127612782:- chr8:128590718-128649112:+ chr8:128625027:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 220 63 133 15395 503 ENST00000323571.9 unknown downstream downstream duplicates(143),mismatches(16),multimappers(2) AAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GGGCCATGGCAGATGAGTATGAGAGGAACTATTCTGGGAGGAAAAATTCCTTTTATGGCCCAGCTTCTGATATCATGCAACATTACTTCTATTGCTTTGGTGGAAGAAGTGTCAAAGAATTTGAGGCTCTTCTTTCTCTCCAAAATCTCCAAACAGCATAG MPIPPPPPPPPGPPPPPTFHQ|gpwqmsmrgtilggkipfmaqlliscnitsialveevsknlrlfflskiskqh NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24231 ENSG00000286266::CCDC26 ENSG00000286266.1::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000286266 ENSG00000286266.1 lncRNA + - chr8:127578473-127636867:+ chr8:127612622:- chr8:128590718-128649112:+ chr8:128624867:- CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128827701:- chr8:129646445-130696016:- chr8:129839947:- NA NA NA NA NA NA NA NA antisense sense unknown intron exon/splice-site duplication/3'-3' high none none none 6 3 128 967 308 unknown ENST00000676407.1 upstream downstream duplicates(46),low_entropy(1),mismappers(25),mismatches(11),multimappers(9) CAGGGGCCATGGCAGATGAGTATGAGAGGAACTATTCTGGGAGGAAAAATTCCTTTTATGGCCCAGCTTCTGATATCATGCAACATTACTTCTATTGCTTTGGTGGAAGAAGTGTCAAAGAATTTGAGGCTCTTCTTTCTCTCCAAAATCTCCAAACAGCATAG|CCAAGAAGCCTTAATTAACATTTGTTAAGAACTAGAAGATGCATCCCACTCTTTACTTTTTATTCCTAATTCTCATCCATAACTGAAAAGGTTAACATTTCAAATGGGATTACAGAATAGTGATGTCACTTTCCTATATTCATATACCAAGTCAATGTTTAAAAATAGCTTATGTTCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24232 IKZF3::WIPF2 ENSG00000161405.17::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4105 TRUE 1553 IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39829387:- chr17:37913971-38020565:- chr17:37985640:- WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr17:39809908,chr17:39809907,chr17:39809908,chr17:39809909,chr17:39809912,chr17:39809914,chr17:39809914,chr17:39809918,chr17:39809957,chr17:39826777,chr17:39809923,chr17:39809920,chr17:39809920,chr17:39809920 chr17:40259596,chr17:40259597,chr17:40259607,chr17:40259595,chr17:40259593,chr17:40259592,chr17:40259593,chr17:40259587,chr17:40259584,chr17:40238369,chr17:40259582,chr17:40259592,chr17:40259610,chr17:40259614 NA NA chr17:37966161,chr17:37966160,chr17:37966161,chr17:37966162,chr17:37966165,chr17:37966167,chr17:37966167,chr17:37966171,chr17:37966210,chr17:37983030,chr17:37966176,chr17:37966173,chr17:37966173,chr17:37966173 chr17:38415848,chr17:38415849,chr17:38415859,chr17:38415847,chr17:38415845,chr17:38415844,chr17:38415845,chr17:38415839,chr17:38415836,chr17:38394621,chr17:38415834,chr17:38415844,chr17:38415862,chr17:38415866 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |WH2_motif(100%) |WH2(100%) 32 24 49 136 245 ENST00000346872.8 ENST00000323571.9 upstream upstream duplicates(42),low_entropy(2),mismatches(5),multimappers(1) GCCGgGTAGCCACAGCGGCAGCTCCAGCCCGGCCCGGCAGCGACATGGAAG___ATATACAAACAAATGCGGAACTGAAAAGCACTCAGGAGCAGTCTGTGCCCGCAG___AAAGTGCAGCGGTTTTGAATGACTACAGTTTAACCAAATCTCATGAAATGGAAAATGTGGACAGTGGAGAAGGCCCAGCCAATGAAGATGAAGACATAGGAG|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGGAGCTGCCCTGCAGCCCAA MEDIQTNAELKSTQEQSVPAESAAVLNDYSLTKSHEMENVDSGEGPANEDEDIG|gkhraaqae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 24233 IKZF3::WIPF2 ENSG00000161405.17::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4105 TRUE 1553 IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39829387:- chr17:37913971-38020565:- chr17:37985640:- WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40262525:+ chr17:38375556-38440388:+ chr17:38418777:+ chr17:39809908,chr17:39809907,chr17:39809908,chr17:39809909,chr17:39809912,chr17:39809914,chr17:39809914,chr17:39809918,chr17:39809957,chr17:39826777,chr17:39809923,chr17:39809920,chr17:39809920,chr17:39809920 chr17:40259596,chr17:40259597,chr17:40259607,chr17:40259595,chr17:40259593,chr17:40259592,chr17:40259593,chr17:40259587,chr17:40259584,chr17:40238369,chr17:40259582,chr17:40259592,chr17:40259610,chr17:40259614 NA NA chr17:37966161,chr17:37966160,chr17:37966161,chr17:37966162,chr17:37966165,chr17:37966167,chr17:37966167,chr17:37966171,chr17:37966210,chr17:37983030,chr17:37966176,chr17:37966173,chr17:37966173,chr17:37966173 chr17:38415848,chr17:38415849,chr17:38415859,chr17:38415847,chr17:38415845,chr17:38415844,chr17:38415845,chr17:38415839,chr17:38415836,chr17:38394621,chr17:38415834,chr17:38415844,chr17:38415862,chr17:38415866 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 0 3 12 136 221 ENST00000346872.8 ENST00000323571.9 upstream upstream duplicates(5),multimappers(1) GGCAGCTCCAGCCCGGCCCGGCAGCGACATGGAAG___ATATACAAACAAATGCGGAACTGAAAAGCACTCAGGAGCAGTCTGTGCCCGCAG___AAAGTGCAGCGGTTTTGAATGACTACAGTTTAACCAAATCTCATGAAATGGAAAATGTGGACAGTGGAGAAGGCCCAGCCAATGAAGATGAAGACATAGGAG|AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGGAGCTGCCCTGCAGCCCAAGGGAGGTCTCTTCCAAGGAGGAGTGCTGAAGCTTCGACCTGTGGGAGCCAAGGATGGTTCAG___AGAACCTAGCTGGTAAGCCAGCCCTGCAAATCCCCAGTTCTCGAGCTGCTGCCCCAAGGCCTCCAGTATCTGCCGCCAGCGGGCGTCCTCAGGATGATACAGACAGCAGCCG...GCAGTACGGGCATGAAGCACAGCTCCTCTGCCCCTCCCCCACCACCCCCAGGGCGGCGTGCCAACGCACCCCCCACACCTCTGCCTATGCACAGCAGCAA MEDIQTNAELKSTQEQSVPAESAAVLNDYSLTKSHEMENVDSGEGPANEDEDIG|ePKGSSGGYGSGGAALQPKGGLFQGGVLKLRPVGAKDGSENLAGKPALQIPSSRAAAPRPPVSAASGRPQDDTDSS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 24234 IKZF3::WIPF2 ENSG00000161405.17::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4105 TRUE 1553 IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39829387:- chr17:37913971-38020565:- chr17:37985640:- WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40264490:+ chr17:38375556-38440388:+ chr17:38420742:+ chr17:39809923,chr17:39809920,chr17:39809920,chr17:39809920,chr17:39809908,chr17:39809907,chr17:39809908,chr17:39809909,chr17:39809912,chr17:39809914,chr17:39809914,chr17:39809918,chr17:39809957,chr17:39826777 chr17:40259582,chr17:40259592,chr17:40259610,chr17:40259614,chr17:40259596,chr17:40259597,chr17:40259607,chr17:40259595,chr17:40259593,chr17:40259592,chr17:40259593,chr17:40259587,chr17:40259584,chr17:40238369 NA NA chr17:37966176,chr17:37966173,chr17:37966173,chr17:37966173,chr17:37966161,chr17:37966160,chr17:37966161,chr17:37966162,chr17:37966165,chr17:37966167,chr17:37966167,chr17:37966171,chr17:37966210,chr17:37983030 chr17:38415834,chr17:38415844,chr17:38415862,chr17:38415866,chr17:38415848,chr17:38415849,chr17:38415859,chr17:38415847,chr17:38415845,chr17:38415844,chr17:38415845,chr17:38415839,chr17:38415836,chr17:38394621 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 1 0 7 136 243 ENST00000346872.8 ENST00000323571.9 upstream upstream duplicates(4),multimappers(1) CACGTGGAGAGGCCGgGTAGCCACAGCGGCAGCTCCAGCCCGGCCCGGCAGCGACATGGAAG___ATATACAAACAAATGCGGAACTGAAAAGCACTCAGGAGCAGTCTGTGCCCGCAG___AAAGTGCAGCGGTTTTGAATGACTACAGTTTAACCAAATCTCATGAAATGGAAAATGTGGACAGTGGAGAAGGCCCAGCCAATGAAGATGAAGACATAGGAG|AGAACCTAGCTGGTAAGCCAGCCCTGCAAATCCCCAGTTCTCGAGCTGCTGCCCCAAGGCCTCCAGTATCTGCCGCCAGCGGGCGTCCTCAGGATGATACAGACAGCAGCCGGGCCTCACTCCCAGAACTGCCCCGGATGCAGAGACCCTCTTTACCGGACCTCTCTCGGCCTAATACCACCAGCAGTACGGGCATGAAGCACAGCTCCTCTGCCCCTCCCC MEDIQTNAELKSTQEQSVPAESAAVLNDYSLTKSHEMENVDSGEGPANEDEDIG|eNLAGKPALQIPSSRAAAPRPPVSAASGRPQDDTDSSRASLPELPRMQRPSLPDLSRPNTTSSTGMKHSSSAPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 24235 IKZF3::WIPF2 ENSG00000161405.17::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4105 TRUE 1553 IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39829387:- chr17:37913971-38020565:- chr17:37985640:- WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40273790:+ chr17:38375556-38440388:+ chr17:38430042:+ chr17:39809923,chr17:39809920,chr17:39809920,chr17:39809920,chr17:39809908,chr17:39809907,chr17:39809908,chr17:39809909,chr17:39809912,chr17:39809914,chr17:39809914,chr17:39809918,chr17:39809957,chr17:39826777 chr17:40259582,chr17:40259592,chr17:40259610,chr17:40259614,chr17:40259596,chr17:40259597,chr17:40259607,chr17:40259595,chr17:40259593,chr17:40259592,chr17:40259593,chr17:40259587,chr17:40259584,chr17:40238369 NA NA chr17:37966176,chr17:37966173,chr17:37966173,chr17:37966173,chr17:37966161,chr17:37966160,chr17:37966161,chr17:37966162,chr17:37966165,chr17:37966167,chr17:37966167,chr17:37966171,chr17:37966210,chr17:37983030 chr17:38415834,chr17:38415844,chr17:38415862,chr17:38415866,chr17:38415848,chr17:38415849,chr17:38415859,chr17:38415847,chr17:38415845,chr17:38415844,chr17:38415845,chr17:38415839,chr17:38415836,chr17:38394621 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none none none 0 2 0 136 336 ENST00000346872.8 ENST00000323571.9 upstream upstream duplicates(1) GGCCCAGCCAATGAAGATGAAGACATAGGAG|CTCCTCCACCCCCACCACCTGTGATCCGAAATGGTGCCAGGGATGCTCCCCCTCCCCCACCACCATACCGcATGC...CCCCaGAGCCGAGGAcAGCCCCCACCTCCACCCTCAAGGACGCCAGCTGGGCCACCCCCTCCTCCTCCACCGCCCCTGAGGAATGGCCACAGAGATTCTAT...AAGAATATAAACACTTTCAGAGGATATATCCCAGCAAAACAAACCGAG___CTGCCCGTGGAGCCCCACCTCTGCCACCCATTCTCAGGTGAAGCCTGGCTTGG GPANEDEDIG|aPPPPPPVIRNGARDAPPPPPPYRM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 24236 PSMD14::RBMS1 ENSG00000115233.12::ENSG00000153250.21 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4106 FALSE NA PSMD14 ENSG00000115233.12 protein_coding + + chr2:161308425-161411717:+ chr2:161371322:+ chr2:162164936-162268228:+ chr2:162227833:+ RBMS1 ENSG00000153250.21 protein_coding - + chr2:160272151-160493807:- chr2:160347443:+ chr2:161128662-161350318:- chr2:161203954:+ chr2:161375649,chr2:161375644 chr2:160346429,chr2:160346421 NA NA chr2:162232160,chr2:162232155 chr2:161202940,chr2:161202932 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%)| JAB(100%),Prok-JAB(100%)| 24 24 34 1839 73 ENST00000409682.8 unknown downstream upstream duplicates(32),low_entropy(1),mismappers(1),mismatches(3) TGCCACAGTCAGGAACA___GGTGTCAGTGTGGAGGCAGTTGATCCAGTGTTCCAAGCTAAAATGTTGGATATGTTGAAGCAGACAGGAAG___GCCGGAGATGGTTGTTGGTTGGTATCACAGTCACCCTGGCTTTGGTTGTTGGCTTTCTGGTGTGGATATCAACACTCAGCAGAGCTTTGAAGCCTTGTCGGAGAGAGCTGTGGCAGTGGTTGTGGATCCCATTCAGAGTGTAAAAGGAAAG|CATCAGTGTGATATCCAGTGATGTAAGAGACAGCCACAATAATGAATTCCAGTGATGCCAAAGATCAAGTAAGACTACAGAACTGGAAAATTATTCTAAGCAAATGGTGGTGAACACAAGACAGTAGTAGAACTAATCAGTTTTCTCATCGAAGGTCAACAAGTACCAGTATAAACCAGCCCTGAATACTATGGGTGAAATCACCTGAAGGTCTGTCTACCAATTTCTATCTGTGGAAGTTGTCATTTTGAGAATTACATTTTTACTGATCTCTAACACCATACAAAAGTACCTTCATATATATTATGATTCATAACATTTTTAGACTAAGGAATTTTGCTGCACTTCAAGGGCAATGTCTCAAATCTAGCCCAATAACACACCAG PQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGK|hqcdiq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24241 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2253 TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |NNMT/PNMT/TEMT_family(79%) |NNMT_PNMT_TEMT(40%) 3 1 35 2250 674 ENST00000651587.1 ENST00000269582.3 downstream upstream duplicates(14),mismatches(5) CCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTGAAGTGTCCGGACGCACCCTCATCGACATTGGTTCAGGCCCCACCGTGTACCAGCTGCTCAGTGCCTGCAGCCACTTTGAGGACATCACCATGACAGATTTCCTGGAGGTCAACCGCCAGGAGCTGGGGCGCTGGCTGCAGGAGGAGCCGGGGGCCTTCAACTGGAGCATGTACAGCCAACATGCCTGCCTCATTGAGGGCAAGGG___GGAATGCTGGCAGGATAAGGAGCGCCAGCTGCGAGCCAGGGTGAAACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24242 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |NNMT/PNMT/TEMT_family(79%) |NNMT_PNMT_TEMT(40%) 2 3 33 4352 674 ENST00000662410.1 ENST00000269582.3 downstream upstream duplicates(16),mismatches(5) CCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTGAAGTGTCCGGACGCACCCTCATCGACATTGGTTCAGGCCCCACCGTGTACCAGCTGCTCAGTGCCTGCAGCCACTTTGAGGACATCACCATGACAGATTTCCTGGAGGTCAACCGCCAGGAGCTGGGGCGCTGGCTGCAGGAGGAGCCGGGGGCCTTCAACTGGAGCATGTACAGCCAACATGCCTGCCTCATTGAGGGCAAGGG___GGAATGCTGGCAGGATAAGGAGCGCCAGCTGCGAGCCAGGGTGAAACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24243 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2254 TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |NNMT/PNMT/TEMT_family(79%) |NNMT_PNMT_TEMT(40%) 32 10 30 15088 674 ENST00000651587.1 ENST00000269582.3 downstream upstream duplicates(23),mismatches(6) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGAAGTGTCCGGACGCACCCTCATCGACATTGGTTCAGGCCCCACCGTGTACCAGCTGCTCAGTGCCTGCAGCCACTTTGAGGACATCACCATGACAGATTTCCTGGAGGTCAACCGCCAGGAGCTGGGGCGCTGGCTGCAGGAGGAGCCGGGGGCCTTCAACTGGAGCATGTACAGCCAACATGCCTGCCTCATTGAGGGCAAGGG___GGAATGCTGGCAGGATAAGGAGCGCCAGCTGCGAGCCAGGGTGAAACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24244 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |NNMT/PNMT/TEMT_family(79%) |NNMT_PNMT_TEMT(40%) 1 0 37 13172 674 ENST00000667305.1 ENST00000269582.3 downstream upstream duplicates(13),mismatches(5) GCCAGATCTGCCCTCCA___GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGT...ACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTGAAGTGTCCGGACGCACCCTCATCGACATTGGTTCAGGCCCCACCGTGTACCAGCTGCTCAGTGCCTGCAGCCACTTTGAGGACATCACCATGACAGATTTCCTGGAGGTCAACCGCCAGGAGCTGGGGCGCTGGCTGCAGGAGGAGCCGGGGGCCTTCAACTGGAGCATGTACAGCCAACATGCCTGCCTCATTGAGGGCAAGGG___GGAATGCTGGCAGGATAAGGAGCGCCAGCTGCGAGCCAGGGTGAAACGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24245 PRORP::ARHGAP5 ENSG00000100890.16::ENSG00000100852.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2255 TRUE 4108 TRUE 1555 PRORP ENSG00000100890.16 protein_coding + + chr14:35121846-35277622:+ chr14:35180777:+ chr14:35591052-35746828:+ chr14:35649983:+ ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117140:+ chr14:32545320-32628934:+ chr14:32586346:+ chr14:35222932 chr14:32114823 NA NA chr14:35692138 chr14:32584029 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein-only_RNase_P(35%)|RhoGAP_domain(99%) PPR(100%),PRORP(37%)|RhoGAP(48%),RhoGAP_pG1_pG2(0%) 14 5 15 819 377 ENST00000534898.9 ENST00000345122.8 downstream upstream duplicates(19),mismappers(1),mismatches(2) TGAATGTCTTAAGGGAAAAATCATGAGGGATGTGATAGATGGAGGTGACCAGTACAGAAAGACAACACCTCAG___GAACTTAAGAGATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTGTCATTGATGGTCTCAATGTTGCCAAAATGTTTCCTAAAGTTCGTGAATCTCAACTT|CAGAAAAAGAAAACTAAGAACTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG___GGTTATGTACCGAAGGACTCTACCGTGTCAG ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL|QKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 24246 PRORP::ARHGAP5 ENSG00000100890.16::ENSG00000100852.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4108 TRUE 1555 PRORP ENSG00000100890.16 protein_coding + + chr14:35121846-35277622:+ chr14:35180777:+ chr14:35591052-35746828:+ chr14:35649983:+ ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117143:+ chr14:32545320-32628934:+ chr14:32586349:+ chr14:35222932 chr14:32114823 NA NA chr14:35692138 chr14:32584029 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Protein-only_RNase_P(35%)|RhoGAP_domain(99%) PPR(100%),PRORP(37%)|RhoGAP(48%),RhoGAP_pG1_pG2(0%) 4 0 14 819 352 ENST00000534898.9 ENST00000556611.5 downstream upstream duplicates(10) TGAATGTCTTAAGGGAAAAATCATGAGGGATGTGATAGATGGAGGTGACCAGTACAGAAAGACAACACCTCAG___GAACTTAAGAGATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTGTCATTGATGGTCTCAATGTTGCCAAAATGTTTCCTAAAGTTCGTGAATCTCAACTT|AAAAAGAAAACTAAGAACTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG___GGTTATGTACCGAAGGACTCTACCGTGTCAGCGGGAATAAAACTGAC ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL|KKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 24247 ENSG00000258790::ARHGAP5 ENSG00000258790.1::ENSG00000100852.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4109 TRUE 1556 ENSG00000258790 ENSG00000258790.1 protein_coding + + chr14:35122549-35317474:+ chr14:35180777:+ chr14:35591755-35786680:+ chr14:35649983:+ ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117140:+ chr14:32545320-32628934:+ chr14:32586346:+ chr14:35222932 chr14:32114823 NA NA chr14:35692138 chr14:32584029 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |RhoGAP_domain(99%) PPR(100%),PRORP(37%)|RhoGAP(48%),RhoGAP_pG1_pG2(0%) 14 5 15 819 377 ENST00000557565.1 ENST00000345122.8 downstream upstream duplicates(19),mismappers(1),mismatches(2) TGAATGTCTTAAGGGAAAAATCATGAGGGATGTGATAGATGGAGGTGACCAGTACAGAAAGACAACACCTCAG___GAACTTAAGAGATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTGTCATTGATGGTCTCAATGTTGCCAAAATGTTTCCTAAAGTTCGTGAATCTCAACTT|CAGAAAAAGAAAACTAAGAACTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG___GGTTATGTACCGAAGGACTCTACCGTGTCAG ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL|QKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 24248 ENSG00000258790::ARHGAP5 ENSG00000258790.1::ENSG00000100852.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4109 TRUE 1556 ENSG00000258790 ENSG00000258790.1 protein_coding + + chr14:35122549-35317474:+ chr14:35180777:+ chr14:35591755-35786680:+ chr14:35649983:+ ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117143:+ chr14:32545320-32628934:+ chr14:32586349:+ chr14:35222932 chr14:32114823 NA NA chr14:35692138 chr14:32584029 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |RhoGAP_domain(99%) PPR(100%),PRORP(37%)|RhoGAP(48%),RhoGAP_pG1_pG2(0%) 4 0 14 819 352 ENST00000557565.1 ENST00000556611.5 downstream upstream duplicates(10) TGAATGTCTTAAGGGAAAAATCATGAGGGATGTGATAGATGGAGGTGACCAGTACAGAAAGACAACACCTCAG___GAACTTAAGAGATTTGAGAACTTCATAAAATCTCGTCCTCCTTTTGATGTTGTCATTGATGGTCTCAATGTTGCCAAAATGTTTCCTAAAGTTCGTGAATCTCAACTT|AAAAAGAAAACTAAGAACTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAG___GGTTATGTACCGAAGGACTCTACCGTGTCAGCGGGAATAAAACTGAC ECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQL|KKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 24251 ZNF91::ENSG00000268461 ENSG00000167232.14::ENSG00000268461.2 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4111 TRUE 1557 ZNF91 ENSG00000167232.14 protein_coding - - chr19:23304991-23395471:- chr19:23395325:- chr19:23487793-23578273:- chr19:23578127:- ENSG00000268461 ENSG00000268461.2 unprocessed_pseudogene + + chr19:20389658-20390689:+ chr19:20390626:+ chr19:20500467-20501498:+ chr19:20501435:+ chr19:23379429,chr19:23379880,chr19:23379883 chr19:20390172,chr19:20390161,chr19:20390158 NA NA chr19:23562231,chr19:23562682,chr19:23562685 chr19:20500981,chr19:20500970,chr19:20500967 NA NA sense sense out-of-frame CDS/splice-site exon inversion high none none none 11 9 9 121 45 ENST00000599743.5 ENST00000595282.2 upstream upstream duplicates(10),mismappers(1),mismatches(3) GTTTCCAGGTCTCGACTTCACTGCTCTGTGTCCTCTGCTCCAGGAGGCCCAGCCTGTGTGGCCCTGTGACCTGCAGGTATTGGAGAGCCACAGCTAAGATGCCAGGAACCCCTGGAAGCCTAGAAATG|ACCTGATCACTTGTCCGGAGCAAGGAAAAAAACCTTTGACTTTGAAGAGACTTGAGATGATTGCCATAGCCCCAG___AGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGaCATGATCTTGGCTTACTGCAAACTCCGCCTCCTGCGTTCAAGC?AT MPGTPGSLEM|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24252 ZNF91::ENSG00000268461 ENSG00000167232.14::ENSG00000268461.2 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4111 TRUE 1557 ZNF91 ENSG00000167232.14 protein_coding - - chr19:23304991-23395471:- chr19:23395325:- chr19:23487793-23578273:- chr19:23578127:- ENSG00000268461 ENSG00000268461.2 unprocessed_pseudogene + + chr19:20389658-20390689:+ chr19:20390605:+ chr19:20500467-20501498:+ chr19:20501414:+ chr19:23379429,chr19:23379880,chr19:23379883 chr19:20390172,chr19:20390161,chr19:20390158 NA NA chr19:23562231,chr19:23562682,chr19:23562685 chr19:20500981,chr19:20500970,chr19:20500967 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 3 11 121 42 ENST00000599743.5 ENST00000595282.2 upstream upstream duplicates(4),mismatches(3) CCGGAGTTTCCAGGTCTCGACTTCACTGCTCTGTGTCCTCTGCTCCAGGAGGCCCAGCCTGTGTGGCCCTGTGACCTGCAGGTATTGGAGAGCCACAGCTAAGATGCCAGGAACCCCTGGAAGCCTAGAAATG|GTATTGTTTTCTCTAAGCCAGACCTGATCACTTGTCCGGAGCAAGGAAAAAAACCTTTGACTTTGAAGAGACTTGAGATGATTGCCATAGCCCCAG___AGATAGAGTCTTGCACTGTCACCCAGGCTGGAGTGCAGTGaCATGATCTTGGCTTACTGCAAACTCCGCCTCCTGCGTTCAAGCgATTCTCTTGCCTCAGCCTCCCAACTAGAAGAGATTGCAGGTGCCCACCATCAGGCCCAGCTAATTTTTATATTTTTAG MPGTPGSLEM|vlfslsqt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24253 TRIM33::DENND2C ENSG00000197323.12::ENSG00000175984.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4112 TRUE 1558 TRIM33 ENSG00000197323.12 protein_coding - - chr1:114392790-114511203:- chr1:114463104:- chr1:114935412-115053824:- chr1:115005726:- DENND2C ENSG00000175984.16 protein_coding - - chr1:114582848-114670422:- chr1:114654761:- chr1:115125469-115213043:- chr1:115197382:- chr1:114455553,chr1:114455555 chr1:114656967,chr1:114656966 NA NA chr1:114998175,chr1:114998177 chr1:115199588,chr1:115199587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none B-box_zinc_finger(93%),RING-type_zinc-finger(100%)|DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%) zf-B_box(0%),zf-RING_UBOX(100%)|DENN(100%),dDENN(100%),uDENN(100%) 4 5 13 1118 32 ENST00000358465.7 ENST00000393274.6 upstream downstream duplicates(7),mismatches(2) AGCACATCAAAGAGTAAAATTTACTAAAGATCACTTGATCAGGAAGAAAGAAGATGTCTCAG___AGTCTGTTGGAGCATCTGGTCAACGCCCTGTTTTCTGCCCTGTACACAAACAAGAACAGTTGAAACTTTTCTGTGAAACATGTGATAGATTGACATGTAGAGACTGTCAGCTATTGGAACACAAAGAACATAG|GTGGCAGAGAAACAAACATCGGTATTGCTTAAACCACTTGCTATTTCCAGTTCCGGCT___TTTGCTAGGTCTACCATAACCAAATACCGCAGATTGAGTGGTTCAAACGCCAGAGATTGATATTCTCACAAGTCTGGAGGCTGTAGAAATCTAACATCAAGGTGCCAACAGG AHQRVKFTKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHr|wqrnkhryclnhllfpvpafarstitkyrrlsgsnard* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE E3 ubiquitin-protein ligase TRIM33 Atypical TIF1 Q9UPN9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tripartite motif-containing 33 (PTC7,TIF1G) 1 papillary thyroid epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24254 TRIM33::DENND2C ENSG00000197323.12::ENSG00000175984.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4112 TRUE 1558 TRIM33 ENSG00000197323.12 protein_coding - - chr1:114392790-114511203:- chr1:114463104:- chr1:114935412-115053824:- chr1:115005726:- DENND2C ENSG00000175984.16 protein_coding - - chr1:114582848-114670422:- chr1:114645559:- chr1:115125469-115213043:- chr1:115188180:- chr1:114455553,chr1:114455555 chr1:114656967,chr1:114656966 NA NA chr1:114998175,chr1:114998177 chr1:115199588,chr1:115199587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none B-box_zinc_finger(93%),RING-type_zinc-finger(100%)|DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%) zf-B_box(0%),zf-RING_UBOX(100%)|DENN(100%),dDENN(100%),uDENN(100%) 2 0 11 1118 54 ENST00000358465.7 ENST00000393274.6 upstream downstream duplicates(4),mismatches(1) CCGCCTCCTGGACCGCCAGCCTCGCTCCTGGACACCTGCGCCGTGTGTCAGCAGAGCTTGCAGAGCCGGCGTGAGGCGGAGCCCAAGCTGCTGCCCTGTCT...TTCTGATGAAAAATCAGAACAG___...GTCTCAG___AGTCTGTTGGAGCATCTGGTCAACGCCCTGTTTTCTGCCCTGTACACAAACAAGAACAGTTGAAACTTTTCTGTGAAACATGTGATAGATTGACATGTAGAGACTGTCAGCTATTGGAACACAAAGAACATAG|TTTGCTAGGTCTACCATAACCAAATACCGCAGATTGAGTGGTTCAAACGCCAGAGATTGATATTCTCACAAGTCTGGAGGCTGTAGAAATCTAACATCAAGGTGCCAACAGG___GATTATTCAAGATCAGGTTGTAGCCATTTTCAACAAGGATCACTGATCAAAATTTTCTTTTTACAAAGAGATTTACAAGTTAAACATGAAGGGAAAAT VSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHs|llglp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE E3 ubiquitin-protein ligase TRIM33 Atypical TIF1 Q9UPN9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tripartite motif-containing 33 (PTC7,TIF1G) 1 papillary thyroid epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24255 TRIM33::DENND2C ENSG00000197323.12::ENSG00000175984.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4112 TRUE 1558 TRIM33 ENSG00000197323.12 protein_coding - - chr1:114392790-114511203:- chr1:114463104:- chr1:114935412-115053824:- chr1:115005726:- DENND2C ENSG00000175984.16 protein_coding - - chr1:114582848-114670422:- chr1:114626188:- chr1:115125469-115213043:- chr1:115168809:- chr1:114455553,chr1:114455555 chr1:114656967,chr1:114656966 NA NA chr1:114998175,chr1:114998177 chr1:115199588,chr1:115199587 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none B-box_zinc_finger(93%),RING-type_zinc-finger(100%)|DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%) zf-B_box(0%),zf-RING_UBOX(100%)|DENN(100%),dDENN(100%),uDENN(100%) 1 1 5 1118 130 ENST00000358465.7 ENST00000393276.7 upstream downstream duplicates(3),low_entropy(1),mismatches(1) AAGACATGTATCGAAGCACATCAAAGAGTAAAATTTACTAAAGATCACTTGATCAGGAAGAAAGAAGATGTCTCAG___AGTCTGTTGGAGCATCTGGTCAACGCCCTGTTTTCTGCCCTGTACACAAACAAGAACAGTTGAAACTTTTCTGTGAAACATGTGATAGATTGACATGTAGAGACTGTCAGCTATTGGAACACAAAGAACATAG|GATTATTCAAGATCAGGTTGTAGCCATTTTCAACAAGGATCACTGATCAAAATTTTCTTTTTACAAAGAGATTTACAAGTTAAACATGAAGGGAAAATACTGGAATCATTTGGATTCTGACAGGATAAAGA...ATATTTCACATTTACTTGTAATGGAACCTTTGTAAGATTCATCACTTGTCATTCACCCAGTTGGGAACATGGATGTTGGTTTTTCTCGTACTACTGTTCAGACACTGTCAAGAAGCCACTGCAAAAACATCAAACAAAAAATTTCTCAATGGGAAGGAAGGG...CGGAACTCACAGACGATTCGTGAAGAACTTGGAAGAAATTCTGGGTCAGCACTTTATTACACACAGTCTGAGGACAATATCTATGAAGATATCATAT___ATCC KTCIEAHQRVKFTKDHLIRKKEDVSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHr|iiqdqvvaifnkdh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE E3 ubiquitin-protein ligase TRIM33 Atypical TIF1 Q9UPN9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tripartite motif-containing 33 (PTC7,TIF1G) 1 papillary thyroid epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24257 EAPP::ENSG00000258342 ENSG00000129518.10::ENSG00000258342.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EAPP ENSG00000129518.10 protein_coding - - chr14:34515938-34539704:- chr14:34524697:- chr14:34985144-35008910:- chr14:34993903:- ENSG00000258342 ENSG00000258342.4 lncRNA + - chr14:35897884-36068321:+ chr14:36014135:- chr14:36367090-36537527:+ chr14:36483341:- chr14:34523597 chr14:36014625 NA NA chr14:34992803 chr14:36483831 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none E2F-associated_phosphoprotein(38%)| Eapp_C(36%)| 7 1 3 272 10 ENST00000250454.8 unknown upstream downstream duplicates(2) GGAAAAGTTGCAACAGCTCCGACAAGGTACTACGATGATATATATTTTGATTCTGATTCCGAGGATGAAGACAGAGCAG___TACAGGTGACCAAGAAAAAAAAGAAGAAACAACACAAGATTCCAACAAATGACGAATTACTGTATGATCCTGAAAAAGATAACAGAGATCAGGCCTGGGTTGATGCACAGAGAAGGGG___TTACCATGGTTTGGGACCACAGAGATCACGTCAACAACAGCCTGTTCCAAATAGTGATGCTGTCTTGAATTGTCCTGCCTGCATGACCACACTTTGCCTTGATTGCCAAAG|GTTTAGAAGAGGCAGCACCCCTCTTGCCTGGGATTGGGATAATGCAGCTGAGACGGCCTTCCTGGTAGCCAAGCAGGCTATTCAGCAGGT GKVATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQr|frrgstplawdwdnaaetaflvakqaiqq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24258 COG5::MIPOL1 ENSG00000164597.15::ENSG00000151338.21 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2256 FALSE NA FALSE NA COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107527237:- chr7:106841817-107204706:- chr7:107167682:- MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37546905:+ chr14:37667099-38048330:+ chr14:38016110:+ chr7:107446519,chr7:107446524 chr14:37534018,chr14:37534013 NA NA chr7:107086964,chr7:107086969 chr14:38003223,chr14:38003218 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Golgi_transport_complex_subunit_5(100%)| COG2(100%),COG5(100%),Vps51(100%)| 2 3 5 212 211 ENST00000297135.9 ENST00000327441.11 upstream upstream duplicates(3),mismatches(2) CGAGAATTGGGGCTTTACAGGGAGCTGTTGATAG___GATAAAAGCAAAAATTGTTGAACCATACAATAAGATAGTTGCCCGGACTGCACAACTAGCAAGACTTCAG___GTTGCCTGTGATTTGCTTCGGAGGATTATTCGTATCTTGAATCTCAGTAAGAGACTCCAAGGACAACTGCAAGGGGGAAGTAGAGAGATAACAAAAGCTGCTCAGAGTCTCAATGAACTTG|GTTGGAAAGGCTGGTGGATGTACTGAGGAAGAAGGTTGGAACCGGGACCATGAGGACAGTGATCTGATTGAAAAAAAACGACAGTCTGGGGAAGCGATCACATCTGGTGACCAGGCTGCTTCATTCAACtCTGTGTAAACACCAAAGCCTTAACTTAGCAAACAGTTGTTAGAAGTGGGACACTCCAACCACATTCCAAGCTGAGATAAAATCAAATCACAAATGTTTAACCACTTTGCTGCTGACTTGAGTTATTTATCCAAAT...TTTTACTGAGAGATCATTATAGAAACATGTTAAAGTTGGTTAGGATCATATCTTCACATATGGCCCTTTCTGAATCAAAGTGCGGCAAAGTAAATATTGTCTAAG RIGALQGAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITKAAQSLNEL|gwkgwwmy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24260 CSDE1::AMPD1 ENSG00000009307.17::ENSG00000116748.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSDE1 ENSG00000009307.17 protein_coding - - chr1:114716913-114758676:- chr1:114733732:- chr1:115259534-115301297:- chr1:115276353:- AMPD1 ENSG00000116748.22 protein_coding - + chr1:114673090-114695618:- chr1:114679621:+ chr1:115215711-115238239:- chr1:115222242:+ chr1:114733598,chr1:114733603 chr1:114678324,chr1:114678319 NA NA chr1:115276219,chr1:115276224 chr1:115220945,chr1:115220940 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/5'-5' medium none 'Cold-shock'_DNA-binding_domain(40%)| CSD(66%)| 26 7 29 65535 39 ENST00000610726.5 unknown upstream upstream duplicates(28),mismatches(2) CTTTATTGAAAGAGGTGATGTTGTAAAAGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTACAGCCTGGCGATGATGTGGAATTCACAATCAAGGACAGAAAT___GGTAAAGAAGTTGCAACAGATGTCAGACTATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAG|CTCCTTTAACTCGTCCATCTCGTTAAGCATCTGATGGACCTGGAACTTGGAGGAGAGGAACTTCAGGCGCCG___GGTGAAGACTAATTTGGGTACAGACTACAACCAGGTAGAGCGTAGAGTGTTGCTCAGCAGCCCAGCCACATTCAGCC FIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQ|ll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24262 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 6 6 5 15395 13905 ENST00000323571.9 ENST00000667305.1 downstream upstream duplicates(7) CGAGAAAGAGCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAAG___GTTTTTTGCATGTCTGACACCCATGACTCCACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGCCCAACAGGAGGACAGCTTCAACCCATTACGATTTCATCTCTGCCCCAACCACTCAGCAGCAAGCACCTGTTACCTGTCCACCCCCACCCCTTCCCCCAAACTGCCTTTGAAAAATCCCTAACCTATGAGCTTTGAA MPIPPPPPPPPGPPPPPTFHQ|kdritgsqihkphqedhprnawrlrsslrllhletqdedpawgcqrffacltpmtppgpygstqkqfsptggqlqpitisslpqplsskhllpvhphpfpqtafeksltyel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24263 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr8:127795623,chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127805128,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40245125,chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40238782,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128807869,chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128817374,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38401377,chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38395034,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |WH2_motif(100%) |WH2(100%) 4 0 12 15088 245 ENST00000651587.1 ENST00000323571.9 downstream upstream none GCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24264 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr8:128015730,chr8:128015138,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:128060541 chr17:40229541,chr17:40254778,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238865 NA NA chr8:129027976,chr8:129027384,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:129072787 chr17:38385793,chr17:38411030,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395117 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |WH2_motif(100%) |WH2(100%) 1 0 15 7001 245 ENST00000667305.1 ENST00000323571.9 downstream upstream duplicates(1),mismatches(1) GCTGATCTGTCTTGATGTGAATGTGAACAATGGGAACCTGAGCTGAGCAG___TTAATGtTAGGGTGACAGAAACTGGACCTCTCCCAAGACATGTGACAGAGTAATACAGCAGCCAACTTCTTCGCCAAATTAAAGTTTTACAAGATTTAACCTGTCATCAAGACCTGGGATTTTGGTG|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGGAGCTGCCCTGCAGCCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24265 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 0 14 15395 12746 ENST00000323571.9 ENST00000651587.1 downstream upstream duplicates(15),mismappers(1),mismatches(1) TTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGT MPIPPPPPPPPGPPPPPTFHQ|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24266 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127932053:+ chr8:128806772-129199347:+ chr8:128944299:+ chr17:40261509,chr17:40258299 chr8:127796298,chr8:127925798 NA NA chr17:38417761,chr17:38414551 chr8:128808544,chr8:128938044 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 2 1 12 15395 1149 ENST00000323571.9 ENST00000669132.1 downstream upstream duplicates(16),mismappers(1),mismatches(1) TTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|ATTCCTGGGAACACCACCATGGAGGGCCTGGCCTTTGGCGGTGGACAGTCTGTGGCTGGGTGGGAACGTCAGGAGTGGGGCCTGCCTCTTTGCTGGGAATGCCGTGCACTCCCAGCCCACTTGCCCCATGCCAGCACTCGAGGCAG___GACTTCGCAGGTGAGCAGTAACGGAAATCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAG MPIPPPPPPPPGPPPPPTFHQ|ipgnttmeglafgggqsvagwerqewglplcwecralpahlphastrgrtsqvssngnqprlflpapalsnsprcg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24267 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |WH2_motif(100%) |WH2(100%) 0 1 14 13172 245 ENST00000651587.1 ENST00000323571.9 downstream upstream duplicates(1),mismatches(1) ATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCC...GTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGGAGCTGCCCTGCAGCCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24268 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:127805128,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238782,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:128817374,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395034,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |WH2_motif(100%) |WH2(100%) 1 1 12 4352 245 ENST00000662410.1 ENST00000323571.9 downstream upstream duplicates(2),mismatches(1) CTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAcCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24269 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40260535:+ chr17:38375556-38440388:+ chr17:38416787:+ chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:127805128,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238782,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:128817374,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395034,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |WH2_motif(100%) |WH2(100%) 1 0 12 2250 245 ENST00000651587.1 ENST00000323571.9 downstream upstream duplicates(1),mismatches(1) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGG...CTcCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAcCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTA...TACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GCAAACACAGAGCAGCCCAAGCTGAGTAGAGATGAGCAGCGGGGTCGAGGCGCCCTCTTACAGGACATTTGCAAAGGGACCAAGCTGAAGAAGGTGACCAACATTAATGATCGGAGTGCTCCCATCCTCGAGA___AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24270 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939508:+ chr8:128806772-129199347:+ chr8:128951754:+ chr17:40261509,chr17:40258299 chr8:127796298,chr8:127925798 NA NA chr17:38417761,chr17:38414551 chr8:128808544,chr8:128938044 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 1 10 15395 7135 ENST00000323571.9 ENST00000667305.1 downstream upstream duplicates(14),mismappers(1),mismatches(1) GCTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAG MPIPPPPPPPPGPPPPPTFHQ|ltilpgafsrgarvtlahtaimmvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24271 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 2 0 10 15395 7119 ENST00000323571.9 ENST00000651587.1 downstream upstream duplicates(14),mismappers(1),mismatches(1) CTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|AATCCTGTTACACCTGGGATTTAGGC MPIPPPPPPPPGPPPPPTFHQ|npvtpgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24272 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128009590:+ chr8:128806772-129199347:+ chr8:129021836:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 10 15395 6244 ENST00000323571.9 ENST00000667305.1 downstream upstream duplicates(12),mismappers(1),mismatches(1) GGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GaCAACAGAGATTTTGAGAAACACATTGAAGGATCTGTTAACACTTGATATACCCAATAAAAGCAGTGGTTGTGCCAGTGCTGATCTGTCTTGATGTGAATGTGAACAATGGGAACCTGAGCTGAG MPIPPPPPPPPGPPPPPTFHQ|dnrdfekhiegsvnt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1207,hsa-mir-1208 chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24273 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128070160:+ chr8:128806772-129199347:+ chr8:129082406:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 1 8 15395 7153 ENST00000323571.9 ENST00000667305.1 downstream upstream duplicates(11) GGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|AGCCAGTCTTGGTGCTCTGTGTTCACCTGGTTCATCTGAGGAGCTGCATCTA...TGCTTCTCCTGTTGCTGCTAGTGGACATGAG___AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAG MPIPPPPPPPPGPPPPPTFHQ|sqswcsvftwfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24274 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096521:+ chr8:128806772-129199347:+ chr8:129108767:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 0 5 15395 13277 ENST00000323571.9 ENST00000657693.1 downstream upstream duplicates(5) GGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGGCTACTGCATCTTGAGACTCAGGATGAAGACCCAGCTTGGGGCTGTCAAAG___GTTTTTTGCATGTCTGACACCCATGACTCCACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGC MPIPPPPPPPPGPPPPPTFHQ|dritgsqihkphqedhprnawrlrsslrllhletqdedpawgcqrffacltpmtppgpygstqkqf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24275 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40262525:+ chr17:38375556-38440388:+ chr17:38418777:+ chr8:127796551,chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127805128,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40261466,chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40238782,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128808797,chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128817374,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38417718,chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38395034,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 0 1 2 4352 221 ENST00000662410.1 ENST00000323571.9 downstream upstream none CTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|AGCCGAAAGGAAGCAGTGGTGGCTATGGCTCTGGAGGAGCTGCCCTGCAGCCCAAGGGAGGTCTCTTCCAAGGAGGAGTGCTGAAGCTTCGtCCTGTGGGgGCCtAG...TCTGCCGCCAGCGGGCGTCCTCAGGATGATACAGACAGCAGCCGGGCCTCACTCCCAGAACTGCCCCGGATGCAGAGACCCTCTTTACCGGACCTCTCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24276 PVT1::WIPF2 ENSG00000249859.14::ENSG00000171475.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4114 TRUE 1560 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40273790:+ chr17:38375556-38440388:+ chr17:38430042:+ chr8:127795623,chr8:127796551,chr8:127983897,chr8:127984074,chr8:128015750,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015791,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128015168,chr8:128060541,chr8:128117823,chr8:128117823,chr8:128117823,chr8:127805128,chr8:127951859,chr8:128015730,chr8:128015138,chr8:128005941 chr17:40245125,chr17:40261466,chr17:40232649,chr17:40232386,chr17:40254764,chr17:40228790,chr17:40228791,chr17:40255325,chr17:40255326,chr17:40254739,chr17:40228938,chr17:40228938,chr17:40254739,chr17:40255359,chr17:40238865,chr17:40245350,chr17:40245188,chr17:40245348,chr17:40238782,chr17:40228825,chr17:40229541,chr17:40254778,chr17:40260380 NA NA chr8:128807869,chr8:128808797,chr8:128996143,chr8:128996320,chr8:129027996,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028037,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129027414,chr8:129072787,chr8:129130069,chr8:129130069,chr8:129130069,chr8:128817374,chr8:128964105,chr8:129027976,chr8:129027384,chr8:129018187 chr17:38401377,chr17:38417718,chr17:38388901,chr17:38388638,chr17:38411016,chr17:38385042,chr17:38385043,chr17:38411577,chr17:38411578,chr17:38410991,chr17:38385190,chr17:38385190,chr17:38410991,chr17:38411611,chr17:38395117,chr17:38401602,chr17:38401440,chr17:38401600,chr17:38395034,chr17:38385077,chr17:38385793,chr17:38411030,chr17:38416632 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 1 15088 336 ENST00000651587.1 ENST00000323571.9 downstream upstream none GTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGgCGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCC...CGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTCCTCCACCCCCACCACCTGTGATCCGAAATGGTGCCAGGGATGCTCCCCCTCCCCCACCACCATACCGAATGCATGGGTCAGAACCCCCGAGCCGAGGAAAGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24277 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127932053:+ chr8:128806772-129199347:+ chr8:128944299:+ chr17:40258299,chr17:40261509,chr17:40238693,chr17:40234211,chr17:40237461,chr17:40247439,chr17:40248405,chr17:40248219,chr17:40227472 chr8:127925798,chr8:127796298,chr8:127804628,chr8:127807957,chr8:127869990,chr8:127907191,chr8:127915080,chr8:127914870,chr8:127922451 NA NA chr17:38414551,chr17:38417761,chr17:38394945,chr17:38390463,chr17:38393713,chr17:38403691,chr17:38404657,chr17:38404471,chr17:38383724 chr8:128938044,chr8:128808544,chr8:128816874,chr8:128820203,chr8:128882236,chr8:128919437,chr8:128927326,chr8:128927116,chr8:128934697 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 15726 1149 ENST00000323571.9 ENST00000669132.1 downstream upstream duplicates(1) GCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|ATTCCTGGGAACACCACCATGGAGGGCCTGGCCTTTGGCGGTGGACAGTCTGTGGCTGGGTGGGAACGTCAGGAGTGGGGCCTGCCTCTTTGCTGGGAATGCCGTGCACTCCCAGCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24278 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128186556:+ chr8:128806772-129199347:+ chr8:129198802:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 1 0 15395 59 ENST00000323571.9 ENST00000651587.1 downstream upstream none CCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|GTAAACATAAGAAAGGAAAACTTTTGTACGGTGAACTTGGGCTAAAAAGAAGAATGAcGTCTCTGGAACTTTTGCTGCTTATAGGAATGAGAGCAAAATCCTGGCATGACCATGATCCTTCAATGAGCACCACTGTGTTGCTGCATTCTGTCTGGCC PPGPPPPPTFHQ|vnirkenfctvnlg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24279 WIPF2::PVT1 ENSG00000171475.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4113 TRUE 1559 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ chr17:40261509,chr17:40258299,chr17:40271274 chr8:127796298,chr8:127925798,chr8:127912885 NA NA chr17:38417761,chr17:38414551,chr17:38427526 chr8:128808544,chr8:128938044,chr8:128925131 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 0 0 15395 49 ENST00000323571.9 ENST00000651587.1 downstream upstream mismatches(1) CAGGACGAAGCCGGAGTGgAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAA...CAACTGGGAGCAGGGCAAGAATGCCAATTCCgCCTCCtCCtCCtCCCCCACCTGGTtCTCCTCCtCCaCCCtCATTTCATCAG|ATTAAAAAACGAAGTCAC MPIPPPPPPPPGsPPPPsFHQ|ikkrs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24281 ENSG00000258342::SLC25A21 ENSG00000258342.4::ENSG00000183032.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000258342 ENSG00000258342.4 lncRNA + - chr14:35897884-36068321:+ chr14:36014048:- chr14:36367090-36537527:+ chr14:36483254:- SLC25A21 ENSG00000183032.12 protein_coding - - chr14:36677921-37172606:- chr14:36888817:- chr14:37147126-37641811:- chr14:37358022:- chr14:36012903,chr14:36012907 chr14:36888927,chr14:36888928 NA NA chr14:36482109,chr14:36482113 chr14:37358132,chr14:37358133 NA NA antisense sense unknown intron intron duplication/3'-3' medium none |Mitochondrial_carrier_protein(96%) |Mito_carr(38%) 0 6 4 10 10 unknown ENST00000557611.1 upstream downstream duplicates(1) AGGTTTAGAAGAGGCAGCACCCCTCTTGCCTGGGATTGGGATAATGCAGCTGAGACGGCCTTCCTGGTAGCCAAGCAGGCTATTCAGCAG|GTGTCCATGAGTAATGGGAAGAAAAGACCTGGCTACCTGTGACCTACAAATCTGAATTCTTCATTTA___GTCTTGTAGAAATTTGCCTGATGCACCCCCTAGATGTGGTGAAAACCAG___GAACTAGCCACTTGACCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24283 WIPF2::LINC00824 ENSG00000171475.14::ENSG00000254275.6 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4115 TRUE 1561 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128421814:- chr8:129417515-129576925:- chr8:129434060:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 15726 30 ENST00000323571.9 ENST00000517583.1 downstream downstream none CTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|CCACAGGGAGCCAGGATAGGAG...TGCACAAGACCACTTTGCCTCCAAACTCAATTTCAAAATCTATGGAAGCTGAATCCCAAGAATGCCTGCAGACTCAAGGGTTATCCATGGGAG___GACATGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24284 WIPF2::LINC00824 ENSG00000171475.14::ENSG00000254275.6 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4115 TRUE 1561 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 0 1 0 15726 24 ENST00000323571.9 ENST00000520766.5 downstream downstream none CTTGCCGGGGGGCGAGCAGGACAGGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG|GTTGAACTGGTTTGTTGAACTT...TTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAGGTGACTCAGCTCTGGCTTTTCAGCAATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24285 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 8 7812 18 ENST00000667305.1 ENST00000672942.1 downstream downstream duplicates(3) CGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGGTGACCTTGGCACATACAGCCATCATGATGGTACTTTAAGT...CTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___GAGATCCCCAGAGGCAATTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24286 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 8 13172 18 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(3) CCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___GAGATCCCCAGAGGCAATTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24287 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 7 4352 18 ENST00000662410.1 ENST00000672942.1 downstream downstream duplicates(3) CCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGGCTGCAGAAGGTCCGAAGAAAGAGG...GGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___GAGATCCCCAGAGGCAATTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24288 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127730922:- chr8:128698588-128751233:- chr8:128743168:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 5 2085 22 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(4) GAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGG...GATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|AGACACAAAAGGGAAGATTCAGAATGTGTGACTTGTATAAAATAAAACCAGTTTCCC...CTTTCTCCACCTCTCAAAAAATTTCCTACTGAGTTGGTCCTCTAGTGAAAAGAGCAGTTAATAAGATGGAAAGCAACTGGACGTGGTGAAGAAAAAGCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24289 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 3 3 15088 18 ENST00000651587.1 ENST00000672942.1 downstream downstream duplicates(2) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGGCTGCAGAAGGTCCGAAGAAAGAGGAGTTACTGGAGGAAAAAGTGGTTCAGAGGTGACTATTCAACCGCATAAGAGATGGTGAAAATTAACCTATCACCACTGCTAATGAACATCACCCTATGGAGAACCG___GAGATCCCCAGAGGCAATTGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24290 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4116 TRUE 1562 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127691866:- chr8:128698588-128751233:- chr8:128704111:- chr8:127930355,chr8:127951011,chr8:127963782,chr8:128029702,chr8:128029702,chr8:128093467,chr8:128175035,chr8:128176904,chr8:127856514,chr8:127806372,chr8:127956643,chr8:127951171,chr8:127808323,chr8:128175074,chr8:127856538,chr8:127856618,chr8:127798196,chr8:128029963 chr8:127715562,chr8:127705383,chr8:127713818,chr8:127705412,chr8:127719416,chr8:127720728,chr8:127705229,chr8:127726878,chr8:127703771,chr8:127703771,chr8:127703771,chr8:127703779,chr8:127703779,chr8:127703779,chr8:127703832,chr8:127704943,chr8:127717938,chr8:127718764 NA NA chr8:128942601,chr8:128963257,chr8:128976028,chr8:129041948,chr8:129041948,chr8:129105713,chr8:129187281,chr8:129189150,chr8:128868760,chr8:128818618,chr8:128968889,chr8:128963417,chr8:128820569,chr8:129187320,chr8:128868784,chr8:128868864,chr8:128810442,chr8:129042209 chr8:128727808,chr8:128717628,chr8:128726063,chr8:128717657,chr8:128731662,chr8:128732974,chr8:128717474,chr8:128739124,chr8:128716016,chr8:128716016,chr8:128716016,chr8:128716024,chr8:128716024,chr8:128716024,chr8:128716077,chr8:128717188,chr8:128730184,chr8:128731010 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 1 15088 3 ENST00000651587.1 ENST00000502463.7 downstream downstream none CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACC...GTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CCTTGCAGCATAAGTGCTGGATAATGATAATGTTCAGCATTTATTGAATGCTT...AGGCACCATGTTATGAGGACACTCAAGCAACCCTGTAGAAAGTTCCATGTGGTGAGGAACTGATACCTCCAATCCATGGCCAGTACCAATTTACTTAGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24291 WIPF2::CASC11 ENSG00000171475.14::ENSG00000249375.8 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CASC11 ENSG00000249375.8 lncRNA - + chr8:127686343-127738987:- chr8:127689191:+ chr8:128698588-128751233:- chr8:128701436:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' medium none none none 1 2 5 15395 9 ENST00000323571.9 unknown downstream upstream none GGACGAAGCCGGAGTGTAGGCGGCAGAGGATTCGCTCCCAGAGCAGCTGCGGCCAG___GTATATGAATGACCTAAAGGTACAAATAAAGACGGAGAGAGAACAGTGCCAACTGGGAGCAGGGCAAGAATGCCAATTCCTCCTCCCCCGCCACCCCCACCTGGTCCTCCTCCACCTCCCACATTTCATCAG|TTTCTGTGGATCAAGAATATGGGAGCAGCTCGCCTGGACAGTCCTGGCTTGAGGCCTCCCtTGAGATGGCAGTCAGCTTCAGGCATGGCTGAGAgAAGAGGATCTACTTCCAGGATGCACTCACATGCTAAGTAAATTGGTACTGGCCATGGATTGGAGGTATCAGTTCCTCACCACATGGAACTTTCTACAGGGTTGCTTGAGTGTCCTCATAACATGGTGCCTGACTTCTCCTAGAGGAAGAGATCCAAGAAAAAGAGTCAGAAGTTGCAAAGTCCTATAT MPIPPPPPPPPGPPPPPTFHQ|flwiknmgaarldspglrpplrwqsasgmaerrgstsrmhshak* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24292 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39832151:- chr17:37913971-38020565:- chr17:37988404:- chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128089447,chr8:127851019,chr8:128089447 chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39857946,chr17:39842060,chr17:39857951 NA NA chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129101693,chr8:128863265,chr8:129101693 chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:38014199,chr17:37998313,chr17:38014204 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2HC_2(100%) 2 0 6 15088 161 ENST00000651587.1 ENST00000346872.8 downstream downstream duplicates(2),low_entropy(1),mismatches(1) CCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATATACAAACAAATGCGGAACTGAAAAGCACTCAGGAGCAGTCTGTGCCCGCAG___AAAGTGCAGCGGTTTTGAATGACTACAGTTTAACCAAATCTCATGAAATGGAAAATGTGGACAGTGGAGAAGGCCCAGCCAATGAAGATGAAGACATAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24293 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39832151:- chr17:37913971-38020565:- chr17:37988404:- chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128089447,chr8:128089447 chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39857946,chr17:39857951 NA NA chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129101693,chr8:129101693 chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:38014199,chr17:38014204 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2HC_2(100%) 0 1 6 2085 161 ENST00000661830.1 ENST00000346872.8 downstream downstream duplicates(3) GAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|ATATACAAACAAATGCGGAACTGAAAAGCACTCAGGAGCAGTCTGTGCCCGCAG___AAAGTGCAGCGGTTTTGAATGACTACAGTTTAACCAAATCTCATGAAATGGAAAATGTGGACAGTGGAGAAGGCCCAGCCAATGAAGATGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24294 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr8:127921879,chr8:127851019,chr8:128089447,chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128117823,chr8:128158203 chr17:39822601,chr17:39842060,chr17:39857951,chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39822599,chr17:39796022 NA NA chr8:128934125,chr8:128863265,chr8:129101693,chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129130069,chr8:129170449 chr17:37978854,chr17:37998313,chr17:38014204,chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:37978852,chr17:37952275 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 2 1 2 15088 22 ENST00000651587.1 ENST00000346872.8 downstream downstream duplicates(2) CCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24295 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128089447 chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39857951 NA NA chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129101693 chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:38014204 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 3 7812 22 ENST00000651587.1 ENST00000346872.8 downstream downstream duplicates(1) GGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCA...TCCCCTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGgG|CAAGTGCGGAGGCAAGACACATCAAAG...CAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24296 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr8:127921879,chr8:127851019,chr8:128089447,chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128117823,chr8:128158203 chr17:39822601,chr17:39842060,chr17:39857951,chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39822599,chr17:39796022 NA NA chr8:128934125,chr8:128863265,chr8:129101693,chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129130069,chr8:129170449 chr17:37978854,chr17:37998313,chr17:38014204,chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:37978852,chr17:37952275 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 2 4352 22 ENST00000664995.1 ENST00000346872.8 downstream downstream duplicates(1) GATGTTTCAGACCTATTTTGCATACTGGCAGCGACAAGTTGAGACTTGTTCAACTTGACACAGTCCTGTGGTCATAGCGAATCTTTCTAAAGCTCTGATCA...AGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCT...CAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24297 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr8:127921879,chr8:127851019,chr8:128089447,chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128117823,chr8:128158203 chr17:39822601,chr17:39842060,chr17:39857951,chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39822599,chr17:39796022 NA NA chr8:128934125,chr8:128863265,chr8:129101693,chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129130069,chr8:129170449 chr17:37978854,chr17:37998313,chr17:38014204,chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:37978852,chr17:37952275 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 2 2250 22 ENST00000651587.1 ENST00000346872.8 downstream downstream duplicates(2) ATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|CAAGTGCGGAGGCAAG...CAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24298 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39791583:- chr17:37913971-38020565:- chr17:37947836:- chr8:128089447,chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128117823,chr8:128158203,chr8:127921879,chr8:127851019 chr17:39857951,chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39822599,chr17:39796022,chr17:39822601,chr17:39842060 NA NA chr8:129101693,chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129130069,chr8:129170449,chr8:128934125,chr8:128863265 chr17:38014204,chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:37978852,chr17:37952275,chr17:37978854,chr17:37998313 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_4(100%),zf-C2HC_2(100%) 1 0 2 4352 33 ENST00000662410.1 ENST00000346872.8 downstream downstream duplicates(1) CCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTGAACGCCCATTCCAGTGTAATCAGTGTGGGGCATCTTTTACTCAGAAAGGTAACCTCCTCCGCCACATTAAACTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24299 PVT1::IKZF3 ENSG00000249859.14::ENSG00000161405.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4117 TRUE 1563 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39766493:- chr17:37913971-38020565:- chr17:37922746:- chr8:127921879,chr8:127851019,chr8:128089447,chr8:128003039,chr8:128015791,chr8:128015770,chr8:128015769,chr8:128015770,chr8:128015791,chr8:128015791,chr8:128051870,chr8:128051794,chr8:128068529,chr8:128089447,chr8:128117823,chr8:128158203 chr17:39822601,chr17:39842060,chr17:39857951,chr17:39824757,chr17:39843338,chr17:39843336,chr17:39843337,chr17:39843337,chr17:39843337,chr17:39843336,chr17:39802248,chr17:39802248,chr17:39798576,chr17:39857946,chr17:39822599,chr17:39796022 NA NA chr8:128934125,chr8:128863265,chr8:129101693,chr8:129015285,chr8:129028037,chr8:129028016,chr8:129028015,chr8:129028016,chr8:129028037,chr8:129028037,chr8:129064116,chr8:129064040,chr8:129080775,chr8:129101693,chr8:129130069,chr8:129170449 chr17:37978854,chr17:37998313,chr17:38014204,chr17:37981010,chr17:37999591,chr17:37999589,chr17:37999590,chr17:37999590,chr17:37999590,chr17:37999589,chr17:37958501,chr17:37958501,chr17:37954829,chr17:38014199,chr17:37978852,chr17:37952275 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none none 1 0 1 15088 20 ENST00000651587.1 ENST00000346872.8 downstream downstream duplicates(1) GGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGAGAAGCGCCACTGCTTTGATGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 24300 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39706990:+ chr17:37844167-37886679:+ chr17:37863243:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 0 1 7 7745 8597 ENST00000651587.1 ENST00000541774.5 downstream upstream none CTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|TGTGCACCGGCACAGACATGAAGCTGCGGCTCCCTGCCAGTCCCGAGACCCACCTGGACATGCTCCGCCACCTCTACCAGGGCTGCCAGGTGGTGCAGGGAAACCTGGAACTCACCTACCTGCCCACCAATGCCAGCCTGTCCTTCCTGCAG___GATATCCAGG...GGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAGGTCCCACTGCAGAGGCTGCGGATTGTGCGAGGCACCCAGCTCTTTGAGGACAACTATGCCCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24301 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39700311:+ chr17:37844167-37886679:+ chr17:37856564:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127881801:+ chr8:128806772-129199347:+ chr8:128894047:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39704495 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614,chr8:127807805 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37860748 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860,chr8:128820051 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 2 1 4 8643 63 ENST00000269571.10 ENST00000656396.1 downstream upstream duplicates(3),mismappers(1),mismatches(1) GGAGAAACCAGGGGAGCCCCCCGGGCAGCCGCGCGCCCCTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|GCTGTTGGCTCACTGCAACCTCCACTGACTTCCTGGACTCAAGGAATCCTCTTAtCTCAGCCTCCTGAGTAGCTGGGACTACAG___GAGTGGAAGAGGGAGGCAGAGAGTTATTCAGAG MELAALCRWGLLLALLPPGAASTQ|gcwltatstdfldsrnplisas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24302 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39727003:+ chr17:37844167-37886679:+ chr17:37883256:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127932053:+ chr8:128806772-129199347:+ chr8:128944299:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)| Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Recep_L_domain(100%)| 0 1 6 26129 1149 ENST00000584601.5 ENST00000669132.1 downstream upstream duplicates(4),mismappers(1),mismatches(1) GCTTCTTCTGTCCAGACCCTGCCCCGGGCGCTGGGGGCATGGTCCACCACAGGCACCGCAGCTCATCTACCAGG|ATTCCTGGGAACACCACCATGGAGGGC...TTTGGCGGTGGACAGTCTGTGGCTGGGTGGGAACGTCAGGAGTGGGGCCTGCCTCTTTGCTGGGAATGCCGTGCACTCCCAGCCCACTTGCCCCATGCCAG FFCPDPAPGAGGMVHHRHRSSSTR|ipgnttme NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4728 chr17:39726495-39726561:+ TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24303 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39700311:+ chr17:37844167-37886679:+ chr17:37856564:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855163:+ chr8:128806772-129199347:+ chr8:128867409:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 1 0 5 8643 2442 ENST00000269571.10 ENST00000665166.1 downstream upstream duplicates(2),mismappers(1),mismatches(1) GGAGAAACCAGGGGAGCCCCCCGGGCAGCCGCGCGCCCCTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|CTGTCTGCAGTGCAGGAAGCCAAC MELAALCRWGLLLALLPPGAASTQ|avcsagsq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24304 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39693261:+ chr17:37844167-37886679:+ chr17:37849514:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 0 1 5 13172 577 ENST00000651587.1 ENST00000584601.5 downstream upstream duplicates(4) TGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGG...TAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG___GTGGCAAAGCAAAGCTATATTCAAGACCACATGCAAAGCTACTCCCTGAGCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24305 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39694988:+ chr17:37844167-37886679:+ chr17:37851241:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 1 0 4 13172 575 ENST00000651587.1 ENST00000584601.5 downstream upstream none GTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTG...TGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTGGCAAAGCAAAGCTATATTCAAGACCACATGCAAAGCTACTCCCTGAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24306 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39700311:+ chr17:37844167-37886679:+ chr17:37856564:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127882062:+ chr8:128806772-129199347:+ chr8:128894308:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39704495 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614,chr8:127807805 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37860748 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860,chr8:128820051 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 2 8643 94 ENST00000269571.10 ENST00000651568.1 downstream upstream duplicates(1),mismappers(1),mismatches(1) GGAGAAACCAGGGGAGCCCCCCGGGCAGCCGCGCGCCCCTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|ATGAGGAAACACTTTCAATGAGCTTAAGGGATGTGCCC...CAGcCACTCGAAGGCTTGGGAATTCCAAAGCAGCTGATCCATGTCATCCCAGCACACGTTAGGGAGGAAGTGAAACGAAGCAAAAATAGAGCCTGTCAGCG...CAGAGAAATAATGTGAGCACAGCCAGAGAAATTGCCACCTCTCCCTTCCTCAGAAGAAGATAAAGGAGACATCGTCTTTTTGGCATCAGTTTTGAAGAAAT MELAALCRWGLLLALLPPGAASTQ|deetlsmslrdv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24308 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39708321:+ chr17:37844167-37886679:+ chr17:37864574:+ chr8:127914830,chr8:128053382,chr8:128053383,chr8:127914938,chr8:127915046,chr8:127997030,chr8:127997057 chr17:39697369,chr17:39694240,chr17:39694292,chr17:39699332,chr17:39697576,chr17:39694198,chr17:39693488 NA NA chr8:128927076,chr8:129065628,chr8:129065629,chr8:128927184,chr8:128927292,chr8:129009276,chr8:129009303 chr17:37853622,chr17:37850493,chr17:37850545,chr17:37855585,chr17:37853829,chr17:37850451,chr17:37849741 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(90%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(75%) 0 1 2 13172 13704 ENST00000651587.1 ENST00000584601.5 downstream upstream duplicates(2) CTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GATATCCAGGAGGTGCAGGGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAGGTCCCACTG...AGAACAACCAGCTGGCTCTCACACTGATAGACACCAACCGCTCTCGGGCCT___GCCACCCCTGTTCTCCGATGTGTAAGGGCTCCCGCTGCTGGGGAGAGAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24309 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39709318:+ chr17:37844167-37886679:+ chr17:37865571:+ chr8:127997030,chr8:127997057,chr8:127880749,chr8:128053382,chr8:128053383,chr8:127914938,chr8:127915046,chr8:127973966,chr8:127914830 chr17:39694198,chr17:39693488,chr17:39693670,chr17:39694240,chr17:39694292,chr17:39699332,chr17:39697576,chr17:39709259,chr17:39697369 NA NA chr8:129009276,chr8:129009303,chr8:128892995,chr8:129065628,chr8:129065629,chr8:128927184,chr8:128927292,chr8:128986212,chr8:128927076 chr17:37850451,chr17:37849741,chr17:37849923,chr17:37850493,chr17:37850545,chr17:37855585,chr17:37853829,chr17:37865512,chr17:37853622 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(60%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(56%) 0 1 2 2085 13797 ENST00000661830.1 ENST00000584601.5 downstream upstream none CTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|AGATCTTGAAAGGAGGGGTCTTGATCCAGCGGAACCCCCAGCTCTGCTACCAGGACACGATTTTGTGGAAGGACATCTTCCACAAGAACAACCAGCTGGCTCTCACACTGATAGACACCAACCGCTCTCGGGCCT___GCCACCCCTGTTCTCCGATGTGTAAGGGCTCCCGCTGCTGGGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24310 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39723319:+ chr17:37844167-37886679:+ chr17:37879572:+ chr8:128131229,chr8:128168527 chr17:39714989,chr17:39721434 NA NA chr8:129143475,chr8:129180773 chr17:37871242,chr17:37877687 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%) 1 0 2 7745 27561 ENST00000667305.1 ENST00000584601.5 downstream upstream none CTTTGAGCTGCTTGGCACGTGGCTCCCTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG___AATCCTGTTACACCTGGGATTTAGGCACTTT...TTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|CCCTCTGACGTCCATCATCTCTGCGGTGGTTGGCATTCTGCTGGTCGTGGTCTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24311 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39693261:+ chr17:37844167-37886679:+ chr17:37849514:+ chr8:127827301 chr17:39690893 NA NA chr8:128839547 chr17:37847146 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(100%) 1 0 1 15088 577 ENST00000651587.1 ENST00000584601.5 downstream upstream none CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATT...TCTGCCCTCCA|CCTACTCAATGTGAAGATGATGAGGATGAAAACCTTTGTGATGATCCACTTCCACTTAATGAATG___GTGGCAAAGCAAAGCTATATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24312 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39700311:+ chr17:37844167-37886679:+ chr17:37856564:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39704495 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614,chr8:127807805 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37860748 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860,chr8:128820051 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 1 8643 12746 ENST00000269571.10 ENST00000651587.1 downstream upstream duplicates(1),mismatches(1) CTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGGCCGGAGCCGCAGTGAGCACCATGGAGCTGGCGGCCTTGTGCCGCTGGGGGCTCCTCCTCGCCCTCTTGCCCCCCGGAGCCGCGAGCACCCAAG|GCCTGATCTTTTGG...AGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCaTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAG MELAALCRWGLLLALLPPGAASTQ|glif NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24313 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39700311:+ chr17:37844167-37886679:+ chr17:37856564:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127932053:+ chr8:128806772-129199347:+ chr8:128944299:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39704495 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614,chr8:127807805 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37860748 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860,chr8:128820051 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none none none 0 1 1 8643 1149 ENST00000269571.10 ENST00000669132.1 downstream upstream duplicates(1) CTTCCCACGGGGCCCTTTACTGCGCCGCGCGCCCGGCCCCCACCCCTCGCAGCACCCCGCGCCCCGCGCCCTCCCAGCCGGGTCCAGCCGGAGCCATGGGG...CCGGAGCCGCGAGCACCCAAG|ATTCCTGGGAACACCACCATGGAGGGCCTGGCCTTTGGCGGTGGACAGTCTGTGGCTGGGTGGGAACGTCAGGAGTGGGG...TCGCAGGTGAGCAaTAACGGAAAaCAGCCCCGTTTATTCCTCCCAGCACCTGCCTTATCCAACTCCCCACGCTGTGGCTGAGTCCCAGCCTGCTATGGAAG GAASTQ|dswehhhggpglwrwtvcgwvgtsgv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24314 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39708321:+ chr17:37844167-37886679:+ chr17:37864574:+ chr8:127997030,chr8:127997057,chr8:128025603,chr8:128025839,chr8:128025881,chr8:128026065,chr8:128025435,chr8:127799617,chr8:127799653,chr8:127799662,chr8:127799708,chr8:127799772,chr8:127799968,chr8:127800011,chr8:127800142,chr8:128181853,chr8:128181906,chr8:128181943,chr8:128182083,chr8:128053382,chr8:128053383,chr8:127825142,chr8:127914938,chr8:127915046,chr8:127827301,chr8:127880749,chr8:127914830 chr17:39694198,chr17:39693488,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39694240,chr17:39694292,chr17:39693426,chr17:39699332,chr17:39697576,chr17:39690893,chr17:39693670,chr17:39697369 NA NA chr8:129009276,chr8:129009303,chr8:129037849,chr8:129038085,chr8:129038127,chr8:129038311,chr8:129037681,chr8:128811863,chr8:128811899,chr8:128811908,chr8:128811954,chr8:128812018,chr8:128812214,chr8:128812257,chr8:128812388,chr8:129194099,chr8:129194152,chr8:129194189,chr8:129194329,chr8:129065628,chr8:129065629,chr8:128837388,chr8:128927184,chr8:128927292,chr8:128839547,chr8:128892995,chr8:128927076 chr17:37850451,chr17:37849741,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37850493,chr17:37850545,chr17:37849679,chr17:37855585,chr17:37853829,chr17:37847146,chr17:37849923,chr17:37853622 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(90%) |Furin-like(100%),GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(75%) 1 0 1 15088 13704 ENST00000651587.1 ENST00000584601.5 downstream upstream duplicates(2) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTT...CCAGATCTGCCCTCCA|GATATCCAGGAGGTGCAGGGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAGGTCCCACTGCAGAGGCTGCGGATTGTGCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24315 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39715446:+ chr17:37844167-37886679:+ chr17:37871699:+ chr8:127914830,chr8:127997030,chr8:127997057,chr8:128025603,chr8:128025839,chr8:128025881,chr8:128026065,chr8:128025435,chr8:127799617,chr8:127799653,chr8:127799662,chr8:127799708,chr8:127799772,chr8:127799968,chr8:127800011,chr8:127800142,chr8:128131229,chr8:128181853,chr8:128181906,chr8:128181943,chr8:128182083,chr8:128053382,chr8:128053383,chr8:127825142,chr8:127914938,chr8:127915046,chr8:127973966,chr8:127827301,chr8:127880749 chr17:39697369,chr17:39694198,chr17:39693488,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39714989,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39694240,chr17:39694292,chr17:39693426,chr17:39699332,chr17:39697576,chr17:39709259,chr17:39690893,chr17:39693670 NA NA chr8:128927076,chr8:129009276,chr8:129009303,chr8:129037849,chr8:129038085,chr8:129038127,chr8:129038311,chr8:129037681,chr8:128811863,chr8:128811899,chr8:128811908,chr8:128811954,chr8:128812018,chr8:128812214,chr8:128812257,chr8:128812388,chr8:129143475,chr8:129194099,chr8:129194152,chr8:129194189,chr8:129194329,chr8:129065628,chr8:129065629,chr8:128837388,chr8:128927184,chr8:128927292,chr8:128986212,chr8:128839547,chr8:128892995 chr17:37853622,chr17:37850451,chr17:37849741,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37871242,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37850493,chr17:37850545,chr17:37849679,chr17:37855585,chr17:37853829,chr17:37865512,chr17:37847146,chr17:37849923 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(32%) |GF_recep_IV(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%),Recep_L_domain(6%) 0 1 1 4352 23993 ENST00000662410.1 ENST00000584601.5 downstream upstream none GAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTACCTATACATCTCAGCATGGCCGGACAGCCTGCCTGACCTCAGCGTCTTCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24316 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39723538:+ chr17:37844167-37886679:+ chr17:37879791:+ chr8:127997030,chr8:127997057,chr8:128131229,chr8:128168527,chr8:127914830,chr8:128053382,chr8:128053383,chr8:127914938,chr8:127915046,chr8:127973966 chr17:39694198,chr17:39693488,chr17:39714989,chr17:39721434,chr17:39697369,chr17:39694240,chr17:39694292,chr17:39699332,chr17:39697576,chr17:39709259 NA NA chr8:129009276,chr8:129009303,chr8:129143475,chr8:129180773,chr8:128927076,chr8:129065628,chr8:129065629,chr8:128927184,chr8:128927292,chr8:128986212 chr17:37850451,chr17:37849741,chr17:37871242,chr17:37877687,chr17:37853622,chr17:37850493,chr17:37850545,chr17:37855585,chr17:37853829,chr17:37865512 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%) 1 0 1 13172 29061 ENST00000651587.1 ENST00000584601.5 downstream upstream duplicates(1) CGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTT...CCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CTGGTGGAGCCGCTGACACCTAGCGGAGCGATGCCCAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24317 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39726815:+ chr17:37844167-37886679:+ chr17:37883068:+ chr8:127880749,chr8:127914830,chr8:127997030,chr8:127997057,chr8:128025603,chr8:128025839,chr8:128025881,chr8:128026065,chr8:128025435,chr8:127799617,chr8:127799653,chr8:127799662,chr8:127799708,chr8:127799772,chr8:127799968,chr8:127800011,chr8:127800142,chr8:128131229,chr8:128168527,chr8:128181853,chr8:128181906,chr8:128181943,chr8:128182083,chr8:128053382,chr8:128053383,chr8:127825142,chr8:127914938,chr8:127915046,chr8:127973966,chr8:127827301 chr17:39693670,chr17:39697369,chr17:39694198,chr17:39693488,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39714989,chr17:39721434,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39705921,chr17:39694240,chr17:39694292,chr17:39693426,chr17:39699332,chr17:39697576,chr17:39709259,chr17:39690893 NA NA chr8:128892995,chr8:128927076,chr8:129009276,chr8:129009303,chr8:129037849,chr8:129038085,chr8:129038127,chr8:129038311,chr8:129037681,chr8:128811863,chr8:128811899,chr8:128811908,chr8:128811954,chr8:128812018,chr8:128812214,chr8:128812257,chr8:128812388,chr8:129143475,chr8:129180773,chr8:129194099,chr8:129194152,chr8:129194189,chr8:129194329,chr8:129065628,chr8:129065629,chr8:128837388,chr8:128927184,chr8:128927292,chr8:128986212,chr8:128839547 chr17:37849923,chr17:37853622,chr17:37850451,chr17:37849741,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37871242,chr17:37877687,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37862174,chr17:37850493,chr17:37850545,chr17:37849679,chr17:37855585,chr17:37853829,chr17:37865512,chr17:37847146 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none none |Rdx(100%) 1 0 1 2250 30881 ENST00000651587.1 ENST00000584601.5 downstream upstream none AAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGA...GCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|AATGAGGACTTGGGCCCAGCCAGTCCCTTGGACAGCACCTTCTACCGCTCACTGCTGGAGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24318 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39708534:+ chr17:37844167-37886679:+ chr17:37864787:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128100980:+ chr8:128806772-129199347:+ chr8:129113226:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Receptor_L_domain(39%)| Recep_L_domain(28%)| 2 0 0 14538 8824 ENST00000584601.5 ENST00000667305.1 downstream upstream none GCTCCGCCACCTCTACCAGGGCTGCCAGGTGGTGCAGGGAAACCTGGAACTCACCTACCTGCCCACCAATGCCAGCCTGTCCTTCCTGCAG___GATATCCAGGAGGTGCAGGGCTACGTGCTCATCGCTCACAACCAAGTGAGGCAGGTCCCACTGCAGAGGCTGCGGATTG...GCCTCCCCAGGAGGCCTGCGGGAGCTGCAGCTTCGAAGCCTCACAG|GTTTTTTGCATGTCTGACACCCATGACTCCACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGCCC ASPGGLRELQLRSLT|gflhv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24319 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39695181:+ chr17:37844167-37886679:+ chr17:37851434:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902456:+ chr8:128806772-129199347:+ chr8:128914702:+ chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39705930,chr17:39704495 chr8:127799016,chr8:127799064,chr8:127799065,chr8:127799084,chr8:127799247,chr8:127799265,chr8:127799523,chr8:127799559,chr8:127799568,chr8:127799614,chr8:127807805 NA NA chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37862183,chr17:37860748 chr8:128811262,chr8:128811310,chr8:128811311,chr8:128811330,chr8:128811493,chr8:128811511,chr8:128811769,chr8:128811805,chr8:128811814,chr8:128811860,chr8:128820051 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation low none none none 1 0 0 607 150 ENST00000584601.5 ENST00000657297.1 downstream upstream none CCAGGACAAACGCAGTGCAGCACAGAGACTCAGACCCTGGCAGCCATGCCTGCGCAGGCAGTGATGAGAGTGACATGTACTGTTGTGGACATGCACAAAAGTGAG|AATCAAGAGATGCATATGCAGGTTTGTTACAGAGGTATATGGGATGCGGTTGAAGTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24320 ERBB2::PVT1 ENSG00000141736.14::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4119 TRUE 1565 ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39712448:+ chr17:37844167-37886679:+ chr17:37868701:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939508:+ chr8:128806772-129199347:+ chr8:128951754:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Furin-like_cysteine_rich_region(100%),Receptor_L_domain(57%)| Furin-like(100%),Recep_L_domain(46%)| 0 0 0 20813 7135 ENST00000584601.5 ENST00000667305.1 downstream upstream mismatches(1) CTCCTTAGACAACTACCTTTCTACGGACGgGGGATCCTGCACCCTCGcCTGCCCCCTGCcCAACaAAGAGGgGACAGCgGAGGATGGAACACAGCGGgGTG...CCAGGAGTTTGCTGGCTGCAAGAAGATCTTTGGGAGCCTGGCATTTCTGCCGGAGAGCTTTGATGG|CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGC QEFAGCKKIFGSLAFLPESFDg|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA TRUE FALSE Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 24321 PVT1::ERBB2 ENSG00000249859.14::ENSG00000141736.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4118 TRUE 1564 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39719787:+ chr17:37844167-37886679:+ chr17:37876040:+ chr8:127914830,chr8:128131229,chr8:128053382,chr8:128053383,chr8:127914938,chr8:127915046,chr8:127973966,chr8:127997030,chr8:127997057 chr17:39697369,chr17:39714989,chr17:39694240,chr17:39694292,chr17:39699332,chr17:39697576,chr17:39709259,chr17:39694198,chr17:39693488 NA NA chr8:128927076,chr8:129143475,chr8:129065628,chr8:129065629,chr8:128927184,chr8:128927292,chr8:128986212,chr8:129009276,chr8:129009303 chr17:37853622,chr17:37871242,chr17:37850493,chr17:37850545,chr17:37855585,chr17:37853829,chr17:37865512,chr17:37850451,chr17:37849741 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Growth_factor_receptor_domain_IV(7%),Protein_kinase_domain(100%) |GF_recep_IV(0%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Rdx(100%) 0 0 0 13172 24692 ENST00000651587.1 ENST00000584601.5 downstream upstream low_entropy(1) CGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCAC...GCGCTCAGCTGGGCTTGAG|CTGTGTGGACCTGGATGACAAGGGCTGCCCCGCCGAGCAGAGAGCCAG___CCCTCTGACGTCCATCATCTCTGCGGTGGTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 24327 ZNF91::ENSG00000291130 ENSG00000167232.14::ENSG00000291130.1 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF91 ENSG00000167232.14 protein_coding - - chr19:23304991-23395471:- chr19:23393955:- chr19:23487793-23578273:- chr19:23576757:- ENSG00000291130 ENSG00000291130.1 lncRNA - + chr19:20340262-20424986:- chr19:20391901:+ chr19:20451071-20607792:- chr19:20502710:+ chr19:23379429,chr19:23379880,chr19:23379883 chr19:20390172,chr19:20390161,chr19:20390158 NA NA chr19:23562231,chr19:23562682,chr19:23562685 chr19:20500981,chr19:20500970,chr19:20500967 NA NA sense antisense unknown intron intron inversion/5'-5' medium none none none 1 0 4 3 76 ENST00000596989.1 unknown upstream upstream mismatches(3) CTCTGCTCCAGGAGGCCCAGCCTGTGTGGCCCTGTGACCTGCAGGTATTGGAGcGCCACAGCTAAGATGCCAGGAACCCCTGGAAGCCTAGAAATG...TGTCACCCAGGCTGGAGTGCAGTGAC|ATGATCTTGGCTTACTGCAAACTCCGCCTCCTGCGTTCAAGCAATTCTCTTGCCTCAGCCTCCCAACTAGAAGAGATTGCAGGTGCCCACCATCAGGCCCAGCTAATTTTTATATTTTTAGTACAGATgGACTTTCACCACGTTGGCCAGGCTGGTCTTAAACTCCTGAACTCAGATGATCGACCCCCCTCAGCCTCCCAAAGTGCTGGGATGGCAGACGTGAGCTcCCATGCCtAGCcTCTTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24330 CASC8::CASC3 ENSG00000246228.7::ENSG00000108349.17 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127368008:- chr8:128302053-128494384:- chr8:128380254:- CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40161753:+ chr17:38296571-38328424:+ chr17:38318006:+ chr8:127338658,chr8:127338657,chr8:127338658,chr8:127338658,chr8:127338658,chr8:127338661,chr8:127338690,chr8:127338663,chr8:127338664,chr8:127338668,chr8:127338666 chr17:40151312,chr17:40151313,chr17:40151315,chr17:40151316,chr17:40151314,chr17:40151309,chr17:40151309,chr17:40151307,chr17:40151307,chr17:40151307,chr17:40151307 NA NA chr8:128350903,chr8:128350902,chr8:128350903,chr8:128350903,chr8:128350903,chr8:128350906,chr8:128350935,chr8:128350908,chr8:128350909,chr8:128350913,chr8:128350911 chr17:38307565,chr17:38307566,chr17:38307568,chr17:38307569,chr17:38307567,chr17:38307562,chr17:38307562,chr17:38307560,chr17:38307560,chr17:38307560,chr17:38307560 NA NA sense sense unknown intron CDS/splice-site translocation medium none |CASC3/Barentsz_eIF4AIII_binding(100%) |Btz(100%) 0 1 3 0 679 unknown ENST00000264645.12 upstream upstream none GTGCTTTCAGCTGCCATCAGTCATCTCTCCCTCAATATGGCTGACCATGCTATCACAG|GGTGAAGAAGGTGAATACAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCAGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAG...AGCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAG___GAGAGCACAGAGCCTGTGGAGAACAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGATCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24333 PVT1::CCDC26 ENSG00000249859.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989291:+ chr8:128806772-129199347:+ chr8:129001537:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128654063:- chr8:129646445-130696016:- chr8:129666309:- chr8:128113614,chr8:128113577,chr8:128062448,chr8:127999666,chr8:127999665,chr8:128111380,chr8:128073818,chr8:127992222,chr8:127992236,chr8:128016693,chr8:128111433,chr8:128111392,chr8:127991317,chr8:127991317,chr8:127991317,chr8:128048426,chr8:128092976,chr8:128092976,chr8:128113664,chr8:128137374,chr8:128161045,chr8:128007015 chr8:128662672,chr8:128662477,chr8:128671528,chr8:128700596,chr8:128699840,chr8:128743543,chr8:128758408,chr8:128777758,chr8:128777758,chr8:128800184,chr8:128852215,chr8:128852022,chr8:128675179,chr8:128777774,chr8:128783717,chr8:128700665,chr8:128782561,chr8:128782578,chr8:128662506,chr8:128839631,chr8:128665635,chr8:128768970 NA NA chr8:129125860,chr8:129125823,chr8:129074694,chr8:129011912,chr8:129011911,chr8:129123626,chr8:129086064,chr8:129004468,chr8:129004482,chr8:129028939,chr8:129123679,chr8:129123638,chr8:129003563,chr8:129003563,chr8:129003563,chr8:129060672,chr8:129105222,chr8:129105222,chr8:129125910,chr8:129149620,chr8:129173291,chr8:129019261 chr8:129674918,chr8:129674723,chr8:129683774,chr8:129712842,chr8:129712086,chr8:129755789,chr8:129770654,chr8:129790004,chr8:129790004,chr8:129812430,chr8:129864461,chr8:129864268,chr8:129687425,chr8:129790020,chr8:129795963,chr8:129712911,chr8:129794807,chr8:129794824,chr8:129674752,chr8:129851877,chr8:129677881,chr8:129781216 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 2 7745 1622 ENST00000651587.1 ENST00000643616.1 downstream downstream duplicates(1) CCTTTCAGCACTCTGGACGGACTTGAGAACTGTCCTTACGTGACCTAAAGCTGGAGTATTTTGAGATTGGAGAATTAAG|TCAGTTTTCAAGTTCTATCACCAAGGATTACTTAGGACTTCCTTGACCAGTCCTGCAGGCCAGTAAAATCTGCATTGACAACCTGGATCAACTTAAGAAGAAAGTGATCAGAGTTAGGAACACATTCAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205 chr8:127795962-127796028:+,chr8:127960633-127960695:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24337 PVT1::GRB7 ENSG00000249859.14::ENSG00000141738.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4122 TRUE 1566 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ GRB7 ENSG00000141738.14 protein_coding + + chr17:39737927-39747291:+ chr17:39742252:+ chr17:37894180-37903544:+ chr17:37898505:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |BPS_(Between_PH_and_SH2)_(100%),PH_domain(100%),Ras_association_(RalGDS/AF-6)_domain(100%),SH2_domain(100%) |BPS(100%),PH(100%),RA(100%),SH2(100%) 0 1 2 2085 2349 ENST00000661830.1 ENST00000445327.6 downstream upstream none ATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTgGGCTGTAAGGACCCCTAAGG|GACAAGGGCACACAACTGGTTCCGTTAAGCCCCTCTCT...GGAAGgCCTTTGCCCAGCCCCTGGGACCCCTCCTGGGACTCCCCGGCCCCCTGATACCCCTCTGCCTGAGGAGGTAAAGAGGTCCCAGCCTCTCCTCATCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24338 PVT1::GRB7 ENSG00000249859.14::ENSG00000141738.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4122 TRUE 1566 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ GRB7 ENSG00000141738.14 protein_coding + + chr17:39737927-39747291:+ chr17:39742252:+ chr17:37894180-37903544:+ chr17:37898505:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |BPS_(Between_PH_and_SH2)_(100%),PH_domain(100%),Ras_association_(RalGDS/AF-6)_domain(100%),SH2_domain(100%) |BPS(100%),PH(100%),RA(100%),SH2(100%) 0 1 1 15088 2349 ENST00000651587.1 ENST00000445327.6 downstream upstream none AGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTT...CACGGCCAGATCTGCCCTCCA|GACAAGGGCACACAACTGGTTCCGTTAAGCCCCTCTCTcGCTCAGACGCCATGGAGCTGGATCTGTCTCCACCTCATCTT...CTCCTGGGACTCCCCGGCCCCCTGATACCCCTCTGCCTGAGGAGGTAAAGAGGTCCCAGCCTCTCCTCATCCCAACCACCGGCAG___GAAACTTCGAGAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24339 PVT1::GRB7 ENSG00000249859.14::ENSG00000141738.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4122 TRUE 1566 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ GRB7 ENSG00000141738.14 protein_coding + + chr17:39737927-39747291:+ chr17:39744886:+ chr17:37894180-37903544:+ chr17:37901139:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |BPS_(Between_PH_and_SH2)_(100%),PH_domain(28%),SH2_domain(100%) |BPS(100%),PH(10%),SH2(100%) 0 1 1 2085 2930 ENST00000661830.1 ENST00000309156.9 downstream upstream duplicates(1) GGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|CCCAACAAGCTTCGAAATGGCCACAAGGGGCTTCGGATCTTCTGCAGTGAAGATGAGCAG...CACCTGCTGGCTGGCTGCCTTCCGCCTCTTCAAG___TACGGGGTGCAGCTGTACAAGAATTACCAGCAGGCACAGTCTCGCCATCTGCATCCATCTTGTTTGG...GAGAAGTGCCTCAGATAATACCCTGGTGGCCATGGACTTCTCTGGCCATGCTGGGCGTGTCATTGAGAACCCCCGGGAGGCTCTGAGTGTGGCCCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24340 PVT1::GRB7 ENSG00000249859.14::ENSG00000141738.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4122 TRUE 1566 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127818999:+ chr8:128806772-129199347:+ chr8:128831245:+ GRB7 ENSG00000141738.14 protein_coding + + chr17:39737927-39747291:+ chr17:39742253:+ chr17:37894180-37903544:+ chr17:37898506:+ NA NA NA NA NA NA NA NA sense sense unknown intron CDS/splice-site translocation low none |BPS_(Between_PH_and_SH2)_(100%),PH_domain(100%),Ras_association_(RalGDS/AF-6)_domain(100%),SH2_domain(100%) |BPS(100%),PH(100%),RA(100%),SH2(100%) 0 0 2 352 2349 ENST00000656168.1 ENST00000445327.6 downstream upstream mismappers(1) CTTACGG___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG___GCTGGAGTGCAGTGGCGTGATCATAGCTCACAgCAGC...CTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTTGCAGG|ACAAGGGCACACAACTGGTTCCGTTAAGCCCCTCTCTcGCTCAGACGCCATGGAGCTGGATCT...CCTGAGGAGGTAAAGAGGTCCCAGCCTCTCCTCATCCCAACCACCGGCAG___GAAACTTCGAGAGGAGGAGAGGCGTGCCACCTCCCTCCCCTCTATCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24342 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4123 TRUE 1567 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 2 7812 2594 ENST00000667305.1 ENST00000524013.2 downstream upstream duplicates(2),mismatches(1) CCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___CTGACCATACTCCCTGGAGCCTTCTCCCGAGGTGCGCGGG...CTTGGTGTTCCCCTTTTACTGCCAGGACACTGAGATTTGGAGAG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGAC...GCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGCGCCCAGCGAGGATATCTGGAAGAAATTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 24343 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4123 TRUE 1567 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 0 1 0 2250 2594 ENST00000651587.1 ENST00000524013.2 downstream upstream mismatches(1) TTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 24344 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4123 TRUE 1567 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 1 0 0 15088 2594 ENST00000651587.1 ENST00000621592.8 downstream upstream mismatches(1) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 24345 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4123 TRUE 1567 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738251:+ chr8:128747680-128755197:+ chr8:128750497:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(100%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(100%) 0 1 0 15088 2594 ENST00000651587.1 ENST00000524013.2 downstream upstream mismatches(1) CCCGCGGGCaGGGCGGGCTCGGGGCGGCCGGGgCGAGGAGGGGCGACGACtAGCgGgGAGCAAAGATGTGCCCCGGGACCCCCcGCACCTTCCAGTGGATT...GGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCCCCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 24346 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4123 TRUE 1567 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127740396:+ chr8:128747680-128755197:+ chr8:128752642:+ chr8:127848450 chr8:127740217 NA NA chr8:128860696 chr8:128752463 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Helix-loop-helix_DNA-binding_domain(100%),Myc_amino-terminal_region(26%),Myc_leucine_zipper_domain(100%) |HLH(100%),Myc-LZ(100%),Myc_N(11%) 1 0 0 15088 3316 ENST00000651587.1 ENST00000621592.8 downstream upstream mismatches(1) CCCGCGGGCaGGGCGGGCTCGGGGCGGCCGGGgCGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGGAGGAACAAGAAGATGAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 24347 PVT1::CDC6 ENSG00000249859.14::ENSG00000094804.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4124 TRUE 1568 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40295356:+ chr17:38444131-38460909:+ chr17:38451608:+ chr8:127974392,chr8:128029305,chr8:128060165,chr8:128060541,chr8:128060842 chr17:40290919,chr17:40290919,chr17:40288912,chr17:40288950,chr17:40294729 NA NA chr8:128986638,chr8:129041551,chr8:129072411,chr8:129072787,chr8:129073088 chr17:38447171,chr17:38447171,chr17:38445164,chr17:38445202,chr17:38450981 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |AAA_lid_domain(100%),CDC6__C_terminal_winged_helix_domain(100%) |AAA_lid_10(100%),Cdc6_C(100%) 0 1 2 13172 37395 ENST00000651587.1 ENST00000209728.9 downstream upstream duplicates(2) GCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTC...CAAAGCACTGGATGTTTGCAG___GAGAGCTATTGAAATTGTAGAGTCAGATGTCAAAAGCCAGACTATTCTCAAACCACTGTCTGAAT___GTAAATCACCTTCTGAGCCTCTGATTCCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24348 CDC6::PVT1 ENSG00000094804.12::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4125 TRUE 1569 CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40291667:+ chr17:38444131-38460909:+ chr17:38447919:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127851934:+ chr8:128806772-129199347:+ chr8:128864180:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none AAA_domain(22%)| AAA(2%),AAA_16(5%),AAA_22(2%)| 0 1 1 31607 379 ENST00000209728.9 ENST00000657449.1 downstream upstream none GTCATCAGGAATTTCTTGAGGGAACACATCTGTGGGAAAAAAGCTGGAAGCCTTTACCTTTCTGGTGCTCCTGGAACTGGAAAAACTGCCTGCTTAAGCCGGATTCTGCAAGACCTCAA|GaaGGAAcTGAGTGATGACCCTGAAGTGAGGACTCATCTCTAGATCTCCAAGGGCTGCAGCTCAGCCAGCACTTTACAAGGGTGATCTGGAGCCAAACTGGCCTGTTGGCTGACCATAGGTGACTCTGGGTAGCCCATACCCAGG VIRNFLREHICGKKAGSLYLSGAPGTGKTACLSRILQDLk|kelsddpevrthl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24349 PVT1::CDC6 ENSG00000249859.14::ENSG00000094804.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4124 TRUE 1568 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40294364:+ chr17:38444131-38460909:+ chr17:38450616:+ chr8:128060165,chr8:128060541,chr8:127843613,chr8:127843620,chr8:127974392,chr8:128029305,chr8:127820786,chr8:127843817,chr8:127843995,chr8:127936032,chr8:127973978 chr17:40288912,chr17:40288950,chr17:40288421,chr17:40288428,chr17:40290919,chr17:40290919,chr17:40291820,chr17:40288901,chr17:40288460,chr17:40289881,chr17:40290310 NA NA chr8:129072411,chr8:129072787,chr8:128855859,chr8:128855866,chr8:128986638,chr8:129041551,chr8:128833032,chr8:128856063,chr8:128856241,chr8:128948278,chr8:128986224 chr17:38445164,chr17:38445202,chr17:38444673,chr17:38444680,chr17:38447171,chr17:38447171,chr17:38448072,chr17:38445153,chr17:38444712,chr17:38446133,chr17:38446562 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |AAA_domain(1%),AAA_lid_domain(100%),CDC6__C_terminal_winged_helix_domain(100%) |AAA(1%),AAA_22(0%),AAA_lid_10(100%),Cdc6_C(100%) 0 1 1 15088 48040 ENST00000651587.1 ENST00000209728.9 downstream upstream none CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGG...CACGGCCAGATCTGCCCTCCA|GTATTGCTAATACCCTGGATCTCACAGATAGAATTCTACCTAGGCTTCAAGCTAGAGAAAAATGTAAGCCACAGCTGTT...AGAAATCAGATAGTCACTATTTTGCAAGATCGACTTAATCAG___GTATCTAGAGATCAGGTTCTGGACAATGCTGCAGTTCAATTCTGTGCCCGCAAAGTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24351 CDC6::PVT1 ENSG00000094804.12::ENSG00000249859.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4125 TRUE 1569 CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40289598:+ chr17:38444131-38460909:+ chr17:38445850:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ chr17:40296336,chr17:40296337,chr17:40296338,chr17:40292038,chr17:40292126,chr17:40295097 chr8:127904355,chr8:127904355,chr8:127904355,chr8:127935135,chr8:128029065,chr8:127980793 NA NA chr17:38452588,chr17:38452589,chr17:38452590,chr17:38448290,chr17:38448378,chr17:38451349 chr8:128916601,chr8:128916601,chr8:128916601,chr8:128947381,chr8:129041311,chr8:128993039 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 0 1 0 52621 13905 ENST00000209728.9 ENST00000667305.1 downstream upstream none GTTCTCCTCGTGTAAAAGCCCTGCCTCTCAGCCCCAGGAAACGTCTGG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCC...ATGGCTCCACCCAGAAGCAATTCAGCCCAACAGGAGGACAGCTTCAACCCATTACGATTTCATCTCTGCCCCAACCACTCAGCAGCAAGCACCTGTTACCT SPRVKALPLSPRKRL|egqnnglpdsqapprgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24352 PVT1::CDC6 ENSG00000249859.14::ENSG00000094804.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4124 TRUE 1568 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40300828:+ chr17:38444131-38460909:+ chr17:38457080:+ chr8:127963071,chr8:127973978,chr8:128021312,chr8:128021312,chr8:128021303,chr8:128060165,chr8:128060541,chr8:127843613,chr8:127843620,chr8:127974392,chr8:128029305,chr8:127820786,chr8:127843817,chr8:127843995,chr8:127936032 chr17:40300137,chr17:40290310,chr17:40299161,chr17:40299160,chr17:40299157,chr17:40288912,chr17:40288950,chr17:40288421,chr17:40288428,chr17:40290919,chr17:40290919,chr17:40291820,chr17:40288901,chr17:40288460,chr17:40289881 NA NA chr8:128975317,chr8:128986224,chr8:129033558,chr8:129033558,chr8:129033549,chr8:129072411,chr8:129072787,chr8:128855859,chr8:128855866,chr8:128986638,chr8:129041551,chr8:128833032,chr8:128856063,chr8:128856241,chr8:128948278 chr17:38456389,chr17:38446562,chr17:38455413,chr17:38455412,chr17:38455409,chr17:38445164,chr17:38445202,chr17:38444673,chr17:38444680,chr17:38447171,chr17:38447171,chr17:38448072,chr17:38445153,chr17:38444712,chr17:38446133 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |CDC6__C_terminal_winged_helix_domain(100%) |Cdc6_C(100%) 1 0 0 15088 31814 ENST00000667305.1 ENST00000209728.9 downstream upstream mismatches(1) CGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTAAATCACCTTCTGAGCCTCTGATTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24364 ZNF33A::ZNF25-DT ENSG00000189180.16::ENSG00000226447.1 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF33A ENSG00000189180.16 protein_coding + + chr10:38010650-38065088:+ chr10:38017386:+ chr10:38299578-38354016:+ chr10:38306314:+ ZNF25-DT ENSG00000226447.1 lncRNA + + chr10:37976825-37992467:+ chr10:37992327:+ chr10:38265753-38281395:+ chr10:38281255:+ chr10:38050425,chr10:38050423 chr10:37991710,chr10:37991704 NA NA chr10:38339353,chr10:38339351 chr10:38280638,chr10:38280632 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none KRAB_box(100%)| KRAB(100%)| 30 39 12 320 88 ENST00000469037.2 ENST00000412789.1 downstream upstream duplicates(19),mismatches(3) GGGCTCTGTATAGAGATGTGATGCTGGAGAACTACAGCAACCTTGTCTCAGTGG___GGTATTGTGTTCACAAACCAGAGGTGATCTTCAGGCTGCAACAAGGAGAAGAGCCATGGAAACAGGAGGAAGAATTCCCAAGCCAAAGCTTTCCAG|GATCAGAATGGCCAGCAGGAGGCCATATGCACCTAAACCAGATGGAAGAAAATGGCCCGGGGTGACCAGCTGGCTCTCTTTATCAAGCTCAGACTCCTCAAGTCCCCGCTTGGAAGAACAGTCACAGATTCCATATACAG___...TGCACTAGGGAGGTGAAG ALYRDVMLENYSNLVSVGYCVHKPEVIFRLQQGEEPWKQEEEFPSQSFP|gsewpagghmhlnqmeengpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24365 ABCB8::CACNA1I ENSG00000197150.13::ENSG00000100346.18 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2257 FALSE NA FALSE NA ABCB8 ENSG00000197150.13 protein_coding + + chr7:151028422-151047782:+ chr7:151042108:+ chr7:150725509-150744869:+ chr7:150739195:+ CACNA1I ENSG00000100346.18 protein_coding + + chr22:39570753-39689735:+ chr22:39658152:+ chr22:39966758-40085740:+ chr22:40054157:+ chr7:151043487,chr7:151043565 chr22:39655006,chr22:39655006 NA NA chr7:150740574,chr7:150740652 chr22:40051011,chr22:40051011 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none ABC_transporter(77%),ABC_transporter_transmembrane_region(100%)|Ion_transport_protein(67%) ABC_membrane(100%),ABC_tran(38%),Zeta_toxin(100%)|Ion_trans(24%),PKD_channel(100%) 10 10 14 156 57 ENST00000542328.5 ENST00000402142.4 downstream upstream duplicates(8),mismatches(1) CCTCGTGGGCCAGTCTGGCGGAG___...CGGGACCTGCGCACCCTTGACCCCTCCTGGCTCCGGGGCCAGGTTGTCGGCTTCATCAGCCAG___GAGCCCGTCCTGTTTGGGACGACCATCATGGAAAACATCCGCTTTGGGAAGCTGGAAGCTTCCGATGAAGAGGTGTACACAGCCGCCCGGGAAGCGAATGCTCACGAGTTCATCACCAGCTTCCCCGAGGGCTACAACACGGTCGTCG|CCGGAGGAGCTGACCAACATCCTGGAGATCTGCAATGTGGTCTTCACCAGCATGTTTGCCCTGGAGATGATCCTGAAGCTGGCTGCATTTGGGCTCTTCGACTACCTGCGTAACCCCTACAACATCTTCGACAGCATCATTGTCATCATCAG___CATCTGGGAGATTGTGGGGCAGGCGGACGGTGGGCTGTCGGTGCTGCGGACCTTCCGGCTGCTGCGCGTG RDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEGYNTVV|aggadqhpgdlqcglhqhvcpgddpeagciwalrlpa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24366 EPB41L1::EDEM2 ENSG00000088367.23::ENSG00000088298.13 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EPB41L1 ENSG00000088367.23 protein_coding + + chr20:36091504-36232799:+ chr20:36194360:+ chr20:34679426-34820721:+ chr20:34782282:+ EDEM2 ENSG00000088298.13 protein_coding - + chr20:35115364-35147336:- chr20:35123021:+ chr20:33703167-33735139:- chr20:33710824:+ chr20:36194886,chr20:36194878 chr20:35116342,chr20:35116331 NA NA chr20:34782808,chr20:34782800 chr20:33704145,chr20:33704134 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_adjacent_(FA)(100%),FERM_central_domain(100%),SAB_domain(3%)| FA(100%),FERM_C(100%),FERM_M(100%),FERM_N(100%),SAB(0%)| 2 13 18 271 54 ENST00000373946.7 unknown downstream upstream duplicates(7) GGCCAGCGCCCTCATTGACCGGCCTGCACCCTTCTTTGAGCGTTCTTCCAGCAAACGGTACACCATGTCCCGCAGCCTTGATGGAG___CAGAGTTCTCCCGCCCAGCCTCGGTCAGCGAGAACCATGATGCAGGGCCTGACGGTGACAAGCGGGATGAGGATGGCGAGTCTGGGGGGCAACGGTCAGAGGCTGAGGAGGGAGAGGTCAGGACTCCAACCAAGATCAAGGAGCTAAAG|CTTCCCTGAAGTGAATCAAATGACATTAGGGCTAGAAAGGAACCTATGAGAGTGTCTCAAATATAGTCCTTTGCTTGATTCTGAGCTGCAAATGGGGAGGTGGAAGAGACTAGGTAATTCCTAAGGTCCGCCCCAAAGTTCTAACATTCCATACACGTAAGCATAATTTATCTGACCCATGGACTTAGGAAGCTTGCCTACACTTCTGAAATCCTGATGGCAGGAGCTCAAAAGGAGTCAACCTTGGCCTTTTCCTTCTCACTCATTTCCTGATTTGAAAGAG ASALIDRPAPFFERSSSKRYTMSRSLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQRSEAEEGEVRTPTKIKELK|lp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24370 KAZN::FHAD1 ENSG00000189337.17::ENSG00000142621.21 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2259 TRUE 4130 TRUE 1570 KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:15044159:+ chr1:14219287-15444539:+ chr1:15370655:+ FHAD1 ENSG00000142621.21 protein_coding + + chr1:15236521-15400283:+ chr1:15327059:+ chr1:15563017-15726779:+ chr1:15653555:+ chr1:15049593,chr1:15049589 chr1:15317139,chr1:15317132 NA NA chr1:15376089,chr1:15376085 chr1:15643635,chr1:15643628 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none none none 12 12 4 102 61 ENST00000636203.1 ENST00000683790.1 downstream upstream duplicates(5) GCGAGGATGCGGTCAAAGCGCTGGCCAAGGAGAAGGACCTGCTGGAGCGTGAGAAGTGGGAGCTGCGGCGCCAAGCCAAGGAGGCCACAGACCACGCCACGGCACTGCGCTCCCAGCTGGACCTCAAGGACAACCGGATGAAGGAGCTGGAGGCCGAGCTGGCCATG|CTGGAGCACTTCAGAAGTCAAGTCATCAAGGCCACCTATGGACGGGCGAAGCCGTTCCGGGACAAGCCCGTCACCGACCAACAG___TTAATAGAGAAAATTACCCAGGTCACTGAGGACAACATCAATTTTCAGCAGAAAAAGTGGACCCTCCAGAAAGAGACCCAGCTGAGCAACTCCAAGCAGGAGGAGACCACCGAGAACATCGAGAAGCTGAGGACGTCGCTGGACAGCTGCCAG___GCTTGCATGAAAATATCCTGTTGCAGCCATGACCTGAAGAAGGAGGTCGACCTTCTTCAGC...CCTGTCTCGGGGCTCCAGAAGGTGGTGCTGGACGTCCTGAGGCACGCGCTGTCCTGGCTGGAGGAGGTGGAGCAGCTCCTCCGGGACCTCGGGATCCTGC EDAVKALAKEKDLLEREKWELRRQAKEATDHATALRSQLDLKDNRMKELEAELAM|LEHFRSQVIKATYGRAKPFRDKPVTDQQLIEKITQVTEDNINFQQKKWTLQKETQLSNSKQEETTENIEKLRTSLDSCQACMKISCCSHDLKKEVDLLQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24371 KAZN::FHAD1 ENSG00000189337.17::ENSG00000142621.21 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4130 TRUE 1570 KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:15044159:+ chr1:14219287-15444539:+ chr1:15370655:+ FHAD1 ENSG00000142621.21 protein_coding + + chr1:15236521-15400283:+ chr1:15317824:+ chr1:15563017-15726779:+ chr1:15644320:+ chr1:15049593,chr1:15049589 chr1:15317139,chr1:15317132 NA NA chr1:15376089,chr1:15376085 chr1:15643635,chr1:15643628 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 3 0 6 102 11 ENST00000636203.1 ENST00000683790.1 downstream upstream none GCCAGATGCAGCAGCTGTATGCCACACTGGAGAGCCGCGAGGAGCAGCTCCGAGACTTCATCCGCAACTATGAGCAGCACCGCAAG___GAGAGCGAGGATGCGGTCAAAGCGCTGGCCAAGGAGAAGGACCTGCTGGAGCGTGAGAAGTGGGAGCTGCGGCGCCAAGCCAAGGAGGCCACAGACCACGCCACGGCACTGCGCTCCCAGCTGGACCTCAAGGACAACCGGATGAAGGAGCTGGAGGCCGAGCTGGCCATG|CAAATCCAAGACATGGAGAAAGAAATGAAGAAGCTTAGGGCAGAGCTGAG QMQQLYATLESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHATALRSQLDLKDNRMKELEAELAM|QIQDMEKEMKKLRAEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24372 KAZN::FHAD1 ENSG00000189337.17::ENSG00000142621.21 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4130 TRUE 1570 KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:15044159:+ chr1:14219287-15444539:+ chr1:15370655:+ FHAD1 ENSG00000142621.21 protein_coding + + chr1:15236521-15400283:+ chr1:15324452:+ chr1:15563017-15726779:+ chr1:15650948:+ chr1:15049593,chr1:15049589 chr1:15317139,chr1:15317132 NA NA chr1:15376089,chr1:15376085 chr1:15643635,chr1:15643628 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 0 1 6 102 10 ENST00000636203.1 ENST00000683790.1 downstream upstream none GCCAGATGCAGCAGCTGTATGCCACACTGGAGAGCCGCGAGGAGCAGCTCCGAGACTTCATCCGCAACTATGAGCAGCACCGCAAG___GAGAGCGAGGATGCGGTCAAAGCGCTGGCCAAGGAGAAGGACCTGCTGGAGCGTGAGAAGTGGGAGCTGCGGCGCCAAGCCAAGGAGGCCACAGACCACGCCACGGCACTGCGCTCCCAGCTGGACCTCAAGGACAACCGGATGAAGGAGCTGGAGGCCGAGCTGGCCATG|GTTGAAGAGAAGCTTCAGGAGGATTCCAGAAGGAAATTGCTTCAGCTGCAAGAAATGGGGAACAGAGAGAGCGTCATTAAAATCAATTTGGAGAGGGCAGTAGGTCAG___CTGGAGCACTTCAGAAGTCAAGTCATCAAGGCCACCTATGGACGGGCGAAGCCGTTCCGGGACAAGCCCGTCACCGACCAACAG___TTAATAGAGAAAAT QMQQLYATLESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHATALRSQLDLKDNRMKELEAELAM|VEEKLQEDSRRKLLQLQEMGNRESVIKINLERAVGQLEHFRSQVIKATYGRAKPFRDKPVTDQQLIEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24375 EIF2A::MED12L ENSG00000144895.12::ENSG00000144893.13 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2261 FALSE NA FALSE NA EIF2A ENSG00000144895.12 protein_coding + + chr3:150546678-150586016:+ chr3:150568292:+ chr3:150264465-150303803:+ chr3:150286079:+ MED12L ENSG00000144893.13 protein_coding + + chr3:151085286-151437072:+ chr3:151156161:+ chr3:150803073-151154860:+ chr3:150873948:+ chr3:150569421,chr3:150569459,chr3:150569457 chr3:151137753,chr3:151137753,chr3:151137748 NA NA chr3:150287208,chr3:150287246,chr3:150287244 chr3:150855540,chr3:150855540,chr3:150855535 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Eukaryotic_translation_initiation_factor_eIF2A(28%)|Eukaryotic_Mediator_12_catenin-binding_domain(100%),Eukaryotic_Mediator_12_subunit_domain(100%) eIF2A(6%)|7TM_GPCR_Srv(100%),7TM_GPCR_Srx(100%),7tm_1(100%),I-set(100%),Ig_3(100%),Med12-LCEWAV(100%),Med12-PQL(100%),ig(100%) 3 6 11 381 43 ENST00000460851.6 ENST00000687756.1 downstream upstream duplicates(4),mismatches(1) ACCTCATGCAGCTTTAGCTAATAAAAGTTTCTTTAAGGCAGATAAAGTTACAATGCTGTGGAATAAAAAAG___CTACTGCTGTGTTGGTAATAGCTAGCACAGATGTTGACAAGACAGGAGCTTCCTACTATGGAGAACAAACTCTACACTACATTGCAACAAATGGAGAAAGTGCTGTAGTGCAATTAC|AGTGGACACAGATATCTACCAGATATCTTCGAGAGCAGTTGGCCAAGATTTCTGACTTTTACCACATGGCCTCCAGCACGGGCGATGGCCCTGTCCCTGTGCCACCAGAGGTGGAGCAAGCCATGAAGCAATGGGAATACAACGAAAAGCTAGCATTTCACATGTTCCAG___GAAGGAATGTTAGAAAAACACGAATATTTGACATGGATCCTGGATGTTTTAGAAAAGATCA PHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQL|qWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPEVEQAMKQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24380 ENPEP::SEC24B ENSG00000138792.10::ENSG00000138802.11 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENPEP ENSG00000138792.10 protein_coding + + chr4:110365733-110565285:+ chr4:110411453:+ chr4:111286889-111486441:+ chr4:111332609:+ SEC24B ENSG00000138802.11 protein_coding + + chr4:109433772-109540896:+ chr4:109506331:+ chr4:110354928-110462052:+ chr4:110427487:+ chr4:110437755,chr4:110437753 chr4:109504761,chr4:109504756 NA NA chr4:111358911,chr4:111358909 chr4:110425917,chr4:110425912 NA NA sense sense unknown intron CDS/splice-site duplication high none |Gelsolin_repeat(100%),Sec23/Sec24_beta-sandwich_domain(100%),Sec23/Sec24_helical_domain(100%),Sec23/Sec24_trunk_domain(100%),Sec23/Sec24_zinc_finger(100%) |Gelsolin(100%),Sec23_BS(100%),Sec23_helical(100%),Sec23_trunk(100%),zf-Sec23_Sec24(100%) 4 3 8 19 206 unknown ENST00000504968.6 downstream upstream duplicates(2),mismatches(2) AGGTGAATCCGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGCTTCCCAAGTGAGGCAATGCCTCGCCCTGCTTCGcCTCGCGCACGGTGCGCGCACCCACTGACCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCCGTCTTCTGCGTCGCTCACGCTGGGAGCTGTAGACCAGAGCTGTTCCTATTCGGCCATCTTGGCTCCTCCACAGAGCG|TATCCTGGTGTGAACCAGCTATCCTCCAGTATAGGAGGATTGAGTCTTCAGAGTTCTCCACAACCAGAAAGCCTGAGACCTGTAAACCTTACTCAGGAGAGGAATATTTTACCTATGACTCCTGTTTGGGCTCCTGTACCTAACTTGAATGCAGACCTCAAAAAATTAAACTGTAGCCCAGA___TTCATTTCGGTGTACTTTGACAAATATTCCACAGACACAGGCTTTACTGAATAAAGCTAAGCTTCCTTTAGGATTGTTGTTACATCCCTTCAGAGACCTAACG___CAATTACCAGTGATAACATCAAATACCATTGTGAGGTGCCGATCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24384 LRMDA::AGAP5 ENSG00000148655.16::ENSG00000172650.15 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ AGAP5 ENSG00000172650.15 protein_coding - + chr10:73674287-73698109:- chr10:73697539:+ chr10:75434045-75457867:- chr10:75457297:+ chr10:75469925 chr10:73681342 NA NA chr10:77229683 chr10:75441100 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Leucine-rich_repeat(15%)| LRR_9(0%)| 2 4 4 53 47 ENST00000611255.5 unknown downstream upstream duplicates(1) CGCTCCCCGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GCATCTCCTGGTCACGAATGTGGTGCATGTGGAGGTCCTCACCAACTTCAACGGTCACCTCAGCAGGCTGCACAGCAGCAGCCATGGGCGCTCCTGCCATCCTGTCCCCAGCTCCTGCCTCATAGATCTCAGATTCAGAGGGACACACCGACCCCTGTTGCTGGTCAAACTCGAGGCTGACGCTAGGGTGCACACAACAG___GAGTGATAAACGGAGTAAAAAACCACAGCCATGGATCGGGA...GATtACAtCAtCAGCCAcCAGGTCTGGAGAAGTCCTTAGAGTTCTCATGGACAAAGTTTGTGAAGGCATCTTAGACAAGATCTTGTCTTTGCTGGTTTTAT MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|hllvtnvvhvevltnfnghlsrlhssshgrschpvpssclidlrfrgthrplllvkleadarvhttgvingvknhshgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24386 SETD7::MAML3 ENSG00000145391.14::ENSG00000196782.13 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SETD7 ENSG00000145391.14 protein_coding - - chr4:139495941-139606699:- chr4:139517885:- chr4:140417095-140527853:- chr4:140439039:- MAML3 ENSG00000196782.13 protein_coding - - chr4:139716753-140154184:- chr4:139890967:- chr4:140637907-141075338:- chr4:140812121:- chr4:139499003,chr4:139499003,chr4:139499003 chr4:139892602,chr4:139892603,chr4:139892636 NA NA chr4:140420157,chr4:140420157,chr4:140420157 chr4:140813756,chr4:140813757,chr4:140813790 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none MORN_repeat(100%),SET_domain(49%)| MORN(100%),MORN_2(100%),SET(1%)| 2 2 3 266 127 ENST00000506866.6 ENST00000509479.6 upstream downstream duplicates(4) GAGGACCGCACTTTATGGGAAATTTATTGATGGAGAGATGATAGAAGGCAAACTGGCTACCCTTATGTCCACTGAAGAAGGGAGGCCTCACTTTGAACTGA...GGGACCTAATACTGTTATGTCTTTTTATAATGGAGTTCGAATTACACACCAAGAG___GTTGACAGCAGGGACTGGGCCCTTAATGGGAACACCCTCTCCCTTGATGAAGAAACGGTCATTGATGTGCCTGAGCCCTATAACCACGTATCCAAGTACTGTGCCTCCTTGGGACACAAGGCAAATCACTCCTTCACTCCAAACTGCATCTACGATAT|CTACAAGAGACTGTGAAAAGGAAGTTGGAAGGAGCTCGATCACCACTTAATGGAGACCAGCAGAATGGTG...GAATTTTTCTCCGACTAGCAAACGAATTCGAAAGGACATTTCTGCGGGGATGGAAGCCATCAACAATTTGCCCAGTAACATGCCACTGCCTTCAGCTTCTCCTCTTCACCAACTTGAC...TTTGCCCTTGCAGAACAGTGGAACTCACACTCCTGGGCTTCTAGAAGATCTAAGTAAGAATGGTAGGCTCCCTGAGATTAAACTTCCTGTCAACGGTTGCAGTGACCTGGAGGATAGCTTC GPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDi|ykrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24387 LRMDA::BMS1P4-AGAP5 ENSG00000148655.16::ENSG00000242288.9 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ BMS1P4-AGAP5 ENSG00000242288.9 lncRNA - + chr10:73674295-73730466:- chr10:73697539:+ chr10:75434053-75490224:- chr10:75457297:+ chr10:75469925 chr10:73681342 NA NA chr10:77229683 chr10:75441100 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Leucine-rich_repeat(15%)| LRR_9(0%)| 2 2 3 53 47 ENST00000611255.5 unknown downstream upstream none CGCTCCCCGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAGGCCAGGACTGCAGAGAAATTCCAGAGCACCTTGGCAGGGACTGTGGACATTTCGCAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GCATCTCCTGGTCACGAATGTGGTGCATGTGGAGGTCCTCACCAACTTCAACGGTCACCTCAGCAGGCTGCACAGCAGCAGCCATGGGCGCTCCTGCCATCCTGTCCCCAGCTCCTGCCTCATAGATCTCAGATTCAGAGGGACACACCGACCCCTGTTGCTGGTCAAACTCGAGGCTGACGCTAGGGTGCACACAACAG___GAGTGATAAACGGAGTAAAAAACCACAGCCATGGATCGGGA...GATtACAtCAtCAGCCAcCAGGTCTGGAGAAGTCCTTAGAGTTCTCATGGACAAAGTTTGTGAAGGCATCTTAGACAAGATCTTGTCTTTGCTGGTTTTAT MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLr|hllvtnvvhvevltnfnghlsrlhssshgrschpvpssclidlrfrgthrplllvkleadarvhttgvingvknhshgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24390 GTPBP3::ANO8 ENSG00000130299.17::ENSG00000074855.11 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GTPBP3 ENSG00000130299.17 protein_coding + + chr19:17334920-17342731:+ chr19:17339599:+ chr19:17445729-17453540:+ chr19:17450408:+ ANO8 ENSG00000074855.11 protein_coding - + chr19:17323223-17334855:- chr19:17332272:+ chr19:17434032-17445664:- chr19:17443081:+ chr19:17339759,chr19:17339761,chr19:17339737 chr19:17331956,chr19:17331957,chr19:17331934 NA NA chr19:17450568,chr19:17450570,chr19:17450546 chr19:17442765,chr19:17442766,chr19:17442743 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none 50S_ribosome-binding_GTPase(59%),GTP-binding_protein_TrmE_N-terminus(100%),MnmE_helical_domain(54%)| MMR_HSR1(19%),MnmE_helical(32%),TrmE_N(100%)| 1 2 3 340 94 ENST00000361619.9 unknown downstream upstream mismatches(1) CTGAACCTGACCGAAGTGGAGGGGCTGGCGGACCTTATCCACGCGGAAAaAGAGGCGCAGCGGCGGgAGGCCCcCAGGgAGCTGGgCGGAGAGCTGGGCCACCTCTGCCGTGGCTGGGCCGAGACCCTCACCAAA___GCTCTGGCCCACGTGGAGGCCTATATCGATTTCGGCGAGGATGACAACCTGGA...GCACGTAGTGGTCACTGGACCCCCCAATGCGGGCAAGAGCAGCCTAGTGAACCTGCTCA___GTCGGAAGCCTGTGTCCATCGTGTCCCCGGAGCCAGGGACCACCCGTGACGTGCTGGAGACCCCAGTCGACCTGGCCGGATTTCCTGTGCTGCTGAGCGACACGGCTGGGTTGCGGGAGGGCGTGGGGCCCGTGGAGCAGGAGGGCGTGCGGCGCGCCCGGGAGAG|GGTCTCGCTCTGTCACCCAGGCTGGACAGAATGCAGTGGCGCTACCATGGCTCACTGCAACCTCGAACTCCTGGGCTCAAGTGATGCTACCGCCTGGACCTCCCAAAGTACTGGGAGCCACTGCGCCTGTTCCCCTGCTTTAAA HVVVTGPPNAGKSSLVNLLSRKPVSIVSPEPGTTRDVLETPVDLAGFPVLLSDTAGLREGVGPVEQEGVRRAREr|vslchpgwtecsgatmahcnlellgssdatawtsqstgshcacspal NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24391 PRMT8::TSPAN9 ENSG00000111218.12::ENSG00000011105.14 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRMT8 ENSG00000111218.12 protein_coding + + chr12:3381349-3593973:+ chr12:3419892:+ chr12:3490515-3703139:+ chr12:3529058:+ TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3278421:+ chr12:3186521-3395730:+ chr12:3387587:+ chr12:3422534,chr12:3422532 chr12:3276197,chr12:3276195 NA NA chr12:3531700,chr12:3531698 chr12:3385363,chr12:3385361 NA NA sense sense unknown intron CDS/splice-site duplication high none |Tetraspanin_family(94%) |Tetraspanin(5%) 1 1 3 10 198 unknown ENST00000537971.5 downstream upstream none CCCAAGCGGCTTGACTTCTCCCCTTTGCCCCCTCGCCACCCACCCCTTGCCTAAGCAATCACCAAGACCTTGcATTCCTTCTGTTTAGTATTTGATTTGC...TCAGATCACTCTCCTGCTGAAAACCCTTCCAGGGCTCTCAATGGCCTCGAGTTAAATGAAGCCCAGACACCTCATCACAAGGCTCGCATCCTTTCTCCTGGCTTGTCCAGGGCATGGCCTCACACAGCACCCCAGCCAGAAGGATGCTCAGTTCCCTGACCTCATCATGCT|CTCTGTGGCTGTGGGCTGCTGGGAGTGGGCATCTGGCTCTCCGTGTCCCAAGGCAACTTTGCCACCTTCTCCCCCAGCTTCCCTTCGTTGTCTGCAGCCAACCTGGTCATTGCCATAGGCACCATTGTCATGGTGACGGGCTTCCTCGGCTGCCTGGGGGCCATCAAGGAAAACAAGTGCCTCCTCCTCAGC___TTTTTCATCGTCCTGTTGGTCATCCTCCTAGCAGAGCTGATCTTACTCATCCTCTTCTTTGTCTACATGGACAAG___GTGAACGAGAACGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24400 KIAA0232::MRFAP1 ENSG00000170871.12::ENSG00000179010.16 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4136 TRUE 1571 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6864183:+ chr4:6783102-6885897:+ chr4:6865910:+ MRFAP1 ENSG00000179010.16 protein_coding + + chr4:6640091-6642729:+ chr4:6640828:+ chr4:6641818-6644456:+ chr4:6642555:+ chr4:6870751,chr4:6870751 chr4:6640053,chr4:6640050 NA NA chr4:6872478,chr4:6872478 chr4:6641780,chr4:6641777 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none Domain_of_unknown_function_(DUF4603)(97%)|MORF4_family-associated_protein1(100%) DUF4603(84%)|MRFAP1(100%) 4 3 5 494 3807 ENST00000425103.5 ENST00000320912.8 downstream upstream duplicates(4) AAAATTCCTTCCCAGGTTAAAAAAATCTGGGATGGAAAAGAGTGCTCAGACATCACTGGATTCCCAGGAGGAATCAACTGGGATTCTTTCAGTAGGAAAGC...CATGAATGAATCCCTGGAAATAGATTTAGAAAGCTCAGAAGCAAATTGTAAAATAATGGCACAATGCGAGGAAGAAATTAATAATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAG|ACATCGCTATTGCGGTTCCGAGGCAGTGGGAAGAGATGCGGCCCCTGGACATCGTCGAGCTGGCGGAACCGGAGGAAGTGGAGGTGCTGGAGCCCGAGGAGGATTTCGAGCAGTTTCTGCTCCCGGTCATCAACGAGATGCGCGAGGACATCGCGTCGCTGACGCGCGAGCACGGGCGGGCGTACCTGCGGAACCGGAGCAAGCTGTGGGAGATGGACAATATGCTCATCCAGATCAAAACGCAGGTGGAGGCCTCGGAGGAGAGCGCCCTCAACCgCCTCCAGAACCCGG MNESLEIDLESSEANCKIMAQCEEEINNFCGCKAGCQFPAYEDNPVSSGQLEE|tsllrfrgsgkrcgpwtssswrnrrkwrcwsprrisssfcsrsstrcartsrr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 6784568|6784568 FALSE|FALSE 6642555|6643457 TRUE|FALSE PARTIALLY 5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24401 KIAA0232::MRFAP1 ENSG00000170871.12::ENSG00000179010.16 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4136 TRUE 1571 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6864183:+ chr4:6783102-6885897:+ chr4:6865910:+ MRFAP1 ENSG00000179010.16 protein_coding + + chr4:6640091-6642729:+ chr4:6641730:+ chr4:6641818-6644456:+ chr4:6643457:+ chr4:6870751,chr4:6870751 chr4:6640053,chr4:6640050 NA NA chr4:6872478,chr4:6872478 chr4:6641780,chr4:6641777 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication low none Domain_of_unknown_function_(DUF4603)(97%)| DUF4603(84%)| 1 0 0 494 4458 ENST00000425103.5 ENST00000320912.8 downstream upstream none GAAATTAATAATTTTTGTGGTTGCAAAGCAGGTTGTCAGTTTCCTGCTTATGAAGATAATCCAGTTTCTTCGGGACAGCTGGAAGAG|GTTTCCAGCCAATGGATTCTGGTCAACTGGTGGAGATTGGCTGACACCCTGG EINNFCGCKAGCQFPAYEDNPVSSGQLEE|vssqwilvnwwrladtl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 6784568|6784568 FALSE|FALSE 6642555|6643457 FALSE|TRUE PARTIALLY 5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24402 KIAA0232::MRFAP1 ENSG00000170871.12::ENSG00000179010.16 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4136 TRUE 1571 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6842204:+ chr4:6783102-6885897:+ chr4:6843931:+ MRFAP1 ENSG00000179010.16 protein_coding + + chr4:6640091-6642729:+ chr4:6640828:+ chr4:6641818-6644456:+ chr4:6642555:+ chr4:6870751,chr4:6870751 chr4:6640053,chr4:6640050 NA NA chr4:6872478,chr4:6872478 chr4:6641780,chr4:6641777 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none Domain_of_unknown_function_(DUF4603)(7%)|MORF4_family-associated_protein1(100%) DUF4603(37%)|MRFAP1(100%) 1 0 0 341 3807 ENST00000425103.5 ENST00000320912.8 downstream upstream none GGAAAAAGGAGCTTATAAGAAATGGGGAAAGAGTAAGAAAAAATGTTCAGATCTAACTCTAGAAGAAATGAAAAAACAGGCTGCTGTCCAGTGTCTTCGATCTGCTTCTGATGAA|ACATCGCTATTGCGGTTCCGAGGCAGTGGGAAGAGATGCGGCCCCTGGACATCGTCGAGCTGGCGGAACCGGAGGAAG EKGAYKKWGKSKKKCSDLTLEEMKKQAAVQCLRSASDE|tsllrfrgsgkrcgpwtssswrnrr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 6784568|6784568 FALSE|FALSE 6642555|6643457 TRUE|FALSE PARTIALLY 5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24408 BEND3::PDSS2 ENSG00000178409.14::ENSG00000164494.12 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2263 TRUE 4138 TRUE 1572 BEND3 ENSG00000178409.14 protein_coding - - chr6:107065182-107115515:- chr6:107115090:- chr6:107386386-107436719:- chr6:107436294:- PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107154777:- chr6:107473766-107780768:- chr6:107475981:- chr6:107105244,chr6:107105244,chr6:107105248 chr6:107188122,chr6:107188126,chr6:107188127 NA NA chr6:107426448,chr6:107426448,chr6:107426452 chr6:107509326,chr6:107509330,chr6:107509331 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none none none 2 5 0 19 262 ENST00000369042.6 ENST00000369037.9 upstream downstream duplicates(2),low_entropy(1) CCCCACTCCCCGGCCCCGCGCCCTCCCCCCCACGTGGCGCCCAAACTCGGCGCGGGCCCGCCCGGCAAAGTACAGAACTCGCGTCCCAG|TTGCGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCGTTACCATGGAAACAAGGCACTGGAGGCCCTGGAGAGCTTTCCTCCCTCGGAGGCCAGATCTGCTTTAGAAAACATTGTGTTTGCTGTGACCAGATTTTCATGACATCAAATTAAAAAGACACTATTGTTAGTTAGCTGAAAATCCTAGGGAATGAGGTTGATTGGGAGCGCTTTCACGATGCGTTAATGACTTTTAAAACATATGCATTTTTCCTTCCTTTTATCACATTGCTAAATGAGTTCTGC...AAAAAAAGGTCAAGCAGTTTTCACTTGTCACGCCAGAAGCACACTTGAGGCTGCAGTCGCAGAAATAATTAATGAGATTCGCTCCTGTGACCTCAGCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24409 BEND3::PDSS2 ENSG00000178409.14::ENSG00000164494.12 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4138 TRUE 1572 BEND3 ENSG00000178409.14 protein_coding - - chr6:107065182-107115515:- chr6:107106077:- chr6:107386386-107436719:- chr6:107427281:- PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107154777:- chr6:107473766-107780768:- chr6:107475981:- chr6:107105244,chr6:107105244,chr6:107105248 chr6:107188122,chr6:107188126,chr6:107188127 NA NA chr6:107426448,chr6:107426448,chr6:107426452 chr6:107509326,chr6:107509330,chr6:107509331 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 1 0 0 12 262 ENST00000429433.3 ENST00000369037.9 upstream downstream none CAGAACTCGCGTCCCAG___GTTTAATTTTTAGAAGTCAATGTCACCTGTAGCAGAGAAGTTCCTTGAAATCAAATCAGACATATGGCAATTGTGAAAAGATTGAA|TTGCGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCGTTACCATGGAAACAAGGCACTGGAGGCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24410 DLGAP1::MYL12B ENSG00000170579.19::ENSG00000118680.14 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DLGAP1 ENSG00000170579.19 protein_coding - + chr18:3496032-4455307:- chr18:4112118:+ chr18:3496030-4455307:- chr18:4112118:+ MYL12B ENSG00000118680.14 protein_coding + + chr18:3261479-3278461:+ chr18:3272884:+ chr18:3261477-3278459:+ chr18:3272882:+ NA NA NA NA NA NA NA NA antisense sense unknown intron 5'UTR/splice-site duplication/3'-3' medium none |EF-hand_domain(100%) |EF-hand_1(100%),EF-hand_11(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%) 3 3 0 4 5197 unknown ENST00000648965.1 downstream upstream duplicates(1) AATCACACTACTGTGTGACTGTCAATACAAATACAGTTTTTCCTGGGGCTTTGGGTCTCCTTTCTGAAGGCTCCTACGTCAGG...GAGGAAGCTGCCTTCCATTCCCAGTTTGTCGGTTTTTATCGTGAAGGGCTGTAGAATTTCGTCATATACTTTTTCTGTGTCTATTAAGATGATCTTCTGAGTTTTTTTCTGTTGTATTGATATGATGTATTACATTATTTGAGTTTTGAATGCTGAA...AAATCCCATTAGGTCAAG___GCACTTACAGCTACAAACTTCCCTGTGATCACTGCTTTAGCTACAATCCATACATTTTG|AATTAAACAACCACCATGTCGAGCAAAAAGGCAAAGACCAAGACCACCAAGAAGCGCCCTCAGCGTGCAACATCCAATGTGTTTGCCATGTTTGACCAGTCACAGATTCAGGAGTTCAAAGAGGCCTTCAACATGATTGATCAGAACAGAGATGGCTTCATCGACAAGGAAGATTTGCATGATATGCTTGCTTCTCTAG___GGAAGAATCCCAC...CAAAGACAAAGATGACTGAAAGAACTTTAGCTAAAATCTTCCAGTTACATTGTCTTACTCTCTTTTACTTCTCAGACACTTCCCCCACCCTCATAGAACCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24454 STRBP::DENND1A ENSG00000165209.19::ENSG00000119522.18 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STRBP ENSG00000165209.19 protein_coding - - chr9:123109500-123268586:- chr9:123132845:- chr9:125871779-126030865:- chr9:125895124:- DENND1A ENSG00000119522.18 protein_coding - - chr9:123379654-123930152:- chr9:123583270:- chr9:126141933-126692431:- chr9:126345549:- chr9:123115438 chr9:123588296 NA NA chr9:125877717 chr9:126350575 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none DZF_domain(100%),Double-stranded_RNA_binding_motif(100%)|DENN_(AEX-3)_domain(9%),dDENN_domain(100%) DZF(100%),dsrm(100%)|DENN(0%),dDENN(100%) 1 1 0 416 168 ENST00000348403.10 ENST00000474676.1 upstream downstream none GCAAAGGCGAGTGCAGCTTTAGCTGCCTTGGAGAAACTGTTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGAAGATTATCCCTCAG___GCAAAGGGCGT...CAGAGGAAGAGGAACTCTAACAAGGGGAGCTTTTGTTGGGGCGACAGCTGCTCCTGGCTACATAGCTCCAG|AAAGTCAGAAACATGGCCCTGGATGATGTCGTGATCCTGAATGTGGACACCAACACCCTGGAAACCCCCTTCGATGACCTCCAGAGCCTCCCAAACGACGTG___GAAGAG RGRGTLTRGAFVGATAAPGYIAP|esqkhgpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-601,hsa-mir-7150 chr9:123402525-123402603:-,chr9:123485529-123485622:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Stomach adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Lung squamous cell carcinoma LUNG,BREAST,STOMACH,UTERUS,LUNG exact 126030715|125999109,126030715|125999109|126030715|126030715,126030715|125999109,126030715,126030715|125999109 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE 126165769|126165769,126531842|126531842|126439068|126520101,126220176|126220176,126165769,126165769|126165769 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24455 ZNF587B::ZNF552 ENSG00000269343.9::ENSG00000178935.5 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57819945:+ chr19:58331089-58357606:+ chr19:58331313:+ ZNF552 ENSG00000178935.5 protein_coding - + chr19:57803841-57814913:- chr19:57814660:+ chr19:58315209-58326281:- chr19:58326028:+ chr19:57824306,chr19:57824322 chr19:57810980,chr19:57810990 NA NA chr19:58335674,chr19:58335690 chr19:58322348,chr19:58322358 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' low none none none 2 0 0 130 19 ENST00000651253.2 unknown downstream upstream duplicates(1) GTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACA...CGCCTGCTGCTCCCGGGCAGTGCTTTCCCCAAGTgGTCtGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|GACTTGTGTGACTAGGAGGTGACCGGAGAGCACGGAAGGCGCCACAATTACCTGAACGGGGAACCTcAG MAAAAPRRPTQ|dlcd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24466 ENSG00000268750::ZNF552 ENSG00000268750.7::ENSG00000178935.5 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57819945:+ chr19:58331087-58370309:+ chr19:58331313:+ ZNF552 ENSG00000178935.5 protein_coding - + chr19:57803841-57814913:- chr19:57814660:+ chr19:58315209-58326281:- chr19:58326028:+ chr19:57824306,chr19:57824322 chr19:57810980,chr19:57810990 NA NA chr19:58335674,chr19:58335690 chr19:58322348,chr19:58322358 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' low none none none 2 0 0 130 19 ENST00000593873.6 unknown downstream upstream duplicates(1) GTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACA...CGCCTGCTGCTCCCGGGCAGTGCTTTCCCCAAGTgGTCtGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|GACTTGTGTGACTAGGAGGTGACCGGAGAGCACGGAAGGCGCCACAATTACCTGAACGGGGAACCTcAG MAAAAPRRPTQ|dlcd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24468 CCDC154::IFT140 ENSG00000197599.13::ENSG00000187535.14 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC154 ENSG00000197599.13 protein_coding - - chr16:1434383-1444556:- chr16:1438619:- chr16:1484384-1494557:- chr16:1488620:- IFT140 ENSG00000187535.14 protein_coding - - chr16:1510427-1612072:- chr16:1511150:- chr16:1560428-1662073:- chr16:1561151:- chr16:1438541,chr16:1438546 chr16:1516952,chr16:1516954 NA NA chr16:1488542,chr16:1488547 chr16:1566953,chr16:1566955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Coiled-coil_domain-containing_protein_154(55%)| CCDC154(57%)| 2 0 0 26 117 ENST00000389176.4 ENST00000426508.7 upstream downstream duplicates(1) GAAGCTTCGGGGGCTGATGGAGGAGCGCCTGCGGGCCCTGCAGGGGCAGCATGAG___GAGAGCCACCTCCTGGAGCAGTGCCAGGGCCTGGATGCTGCCGTGGCCCAGCTGACCAAGTTTGTGCAGCAGAACCAGGCGTCGCTGAACCGcGTCCTACTGGCCGAGGAGAAAGCCTG|GCCTACAGATTCCTGGAGGAGATGCGGCGGCGGCTTCCCTTGGCCAACATGTCCTACTACGTGAGCCCGCAGGCCGTGG KLRGLMEERLRALQGQHEESHLLEQCQGLDAAVAQLTKFVQQNQASLNRVLLAEEKAw|ptdswrrcgggfpwptcptt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24471 NELL1::ANO5 ENSG00000165973.19::ENSG00000171714.13 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NELL1 ENSG00000165973.19 protein_coding + + chr11:20669551-21575686:+ chr11:20960560:+ chr11:20691097-21597232:+ chr11:20982106:+ ANO5 ENSG00000171714.13 protein_coding + + chr11:21782659-22283567:+ chr11:22203804:+ chr11:21804205-22305113:+ chr11:22225350:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none Calcium-binding_EGF_domain(0%),von_Willebrand_factor_type_C_domain(53%)|Calcium-activated_chloride_channel(100%),Dimerisation_domain_of_Ca+-activated_chloride-channel__anoctamin(100%) EGF_CA(0%),TILa(100%),VWC(48%)|Anoct_dimer(100%),Anoctamin(100%) 1 0 0 604 84 ENST00000325319.9 ENST00000684663.1 downstream upstream none ATGTCCTGTCCCCCTCTCAATTGCTCCCCAGACTCCCTCCCAGTGCACATTGCTGGCCAGTGCTGTAAGGTCTGCCGAC___CAAAATGTATCTATGGAGGAAA...TGCCTACTGTGAAG|GGGAAAAAGTCAATAAGCATATAGACTACTCTTTCCAAATGAGTGAG___AGCCTGAGCAGCAGAGAGACCAGCTTTCTCATCAATGAAG AYCE|gEKVNKHIDYSFQMSESLSSRETSFLINE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24482 ZNF419::ZNF772 ENSG00000105136.22::ENSG00000197128.13 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF419 ENSG00000105136.22 protein_coding + + chr19:57487711-57496098:+ chr19:57491597:+ chr19:57999079-58007466:+ chr19:58002965:+ ZNF772 ENSG00000197128.13 protein_coding - + chr19:57466663-57477570:- chr19:57477481:+ chr19:57978031-57988938:- chr19:57988849:+ chr19:57491789,chr19:57491790 chr19:57477118,chr19:57477116 NA NA chr19:58003157,chr19:58003158 chr19:57988486,chr19:57988484 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none KRAB_box(96%)| KRAB(0%)| 55 14 23 465 231 ENST00000347466.10 unknown downstream upstream duplicates(15),mismappers(76),mismatches(28) GTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG|GTCTGACATTGCGTTCTGGAAACTAAACCAGTGGATTAATGGAAAAGCAAACAAAATGTCCACCCGAGGATGGTAGAGGAAGTCCCGCCCTGACGTTGGTGAGGACCAACGGAAACGCCTATTTCCTGGGTTTTCATTGGCCCAGAGCCGCCAAGTTTCCTGGGTAATGTAGTTCCCAC VTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASL|gltlrsgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24483 ENSG00000268107::ZNF772 ENSG00000268107.6::ENSG00000197128.13 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268107 ENSG00000268107.6 protein_coding + + chr19:57487718-57517559:+ chr19:57491597:+ chr19:57999086-58028927:+ chr19:58002965:+ ZNF772 ENSG00000197128.13 protein_coding - + chr19:57466663-57477570:- chr19:57477481:+ chr19:57978031-57988938:- chr19:57988849:+ chr19:57491789,chr19:57491790 chr19:57477118,chr19:57477116 NA NA chr19:58003157,chr19:58003158 chr19:57988486,chr19:57988484 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none none KRAB(0%)| 52 14 21 465 231 ENST00000601674.6 unknown downstream upstream duplicates(15),mismappers(76),mismatches(27) TGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG|GTCTGACATTGCGTTCTGGAAACTAAACCAGTGGATTAATGGAAAAGCAAACAAAATGTCCACCCGAGGATGGTAGAGGAAGTCCCGCCCTGACGTTGGTGAGGACCAACGGAAACGCCTATTTCCTGGGTTTTCATTGGCCCAGAGCCGCCAAGTTTCCTGGGTAATGTAGTTCCC VAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASL|gltlrsgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24484 ERP44::ENSG00000227531 ENSG00000023318.9::ENSG00000227531.1 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERP44 ENSG00000023318.9 protein_coding - - chr9:99979185-100099052:- chr9:100098784:- chr9:102741467-102861334:- chr9:102861066:- ENSG00000227531 ENSG00000227531.1 lncRNA - + chr9:111139246-111284836:- chr9:111233572:+ chr9:113901526-114047116:- chr9:113995852:+ chr9:100069886,chr9:100069896 chr9:111163183,chr9:111163174 NA NA chr9:102832168,chr9:102832178 chr9:113925463,chr9:113925454 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none none none 42 22 15 198 89 ENST00000262455.7 unknown upstream upstream duplicates(3),mismatches(2) GCTGGAGCCCGGGTCGAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTG|GAGCCGCTCTGAGCAACTGTGCCCAGCACCTGGGAGGCGAAAGAACCCTGCAGAAGCCAACAAATCAACATTCCACCAGGAATTTTGTGCTGGATAATTCAACCAATTCAGCTGTTATCCTGGCCACACCCTCGGTCTGGGCTTCCATCCAAACTTCGTCCTTCTTCACTGTTGAAAACCAGAAGCCACAGCCCCCAGCCCTG MHPAVFLSLPDLRCSLLLL|epl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24485 ZNF419::ENSG00000268163 ENSG00000105136.22::ENSG00000268163.1 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF419 ENSG00000105136.22 protein_coding + + chr19:57487711-57496098:+ chr19:57491597:+ chr19:57999079-58007466:+ chr19:58002965:+ ENSG00000268163 ENSG00000268163.1 protein_coding - + chr19:57437970-57477536:- chr19:57477481:+ chr19:57949338-57988904:- chr19:57988849:+ chr19:57491789,chr19:57491790 chr19:57477118,chr19:57477116 NA NA chr19:58003157,chr19:58003158 chr19:57988486,chr19:57988484 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none KRAB_box(96%)| KRAB(0%)| 38 9 16 465 231 ENST00000347466.10 unknown downstream upstream duplicates(13),mismappers(42),mismatches(14) GGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG|GTCTGACATTGCGTTCTGGAAACTAAACCAGTGGATTAATGGAAAAGCAAACAAAATGTCCACCCGAGGATGGTAGAGGAAGTCCCGCCCTGACGTTGGTGAGGACCAACGGAAACGCCTATTTCCTGGGTTTTCATTGGCCCAGAGCCG GYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASL|gltlrsgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24486 ENSG00000268107::ENSG00000268163 ENSG00000268107.6::ENSG00000268163.1 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268107 ENSG00000268107.6 protein_coding + + chr19:57487718-57517559:+ chr19:57491597:+ chr19:57999086-58028927:+ chr19:58002965:+ ENSG00000268163 ENSG00000268163.1 protein_coding - + chr19:57437970-57477536:- chr19:57477481:+ chr19:57949338-57988904:- chr19:57988849:+ chr19:57491789,chr19:57491790 chr19:57477118,chr19:57477116 NA NA chr19:58003157,chr19:58003158 chr19:57988486,chr19:57988484 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR duplication/5'-5' high none none KRAB(0%)| 35 9 14 465 231 ENST00000601674.6 unknown downstream upstream duplicates(13),mismappers(42),mismatches(13) CTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG|GTCTGACATTGCGTTCTGGAAACTAAACCAGTGGATTAATGGAAAAGCAAACAAAATGTCCACCCGAGGATGGTAGAGGAAGTCCCGCCCTGACGTTGGTGAGGACCAACGGAAACGCCTATTTCCTGGGTTTTCATTGGCCCAGAGCCG FEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASL|gltlrsgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24487 WDFY2::HMGB1 ENSG00000139668.9::ENSG00000189403.15 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51675243:+ chr13:52158591-52341845:+ chr13:52249379:+ HMGB1 ENSG00000189403.15 protein_coding - + chr13:30456704-30617597:- chr13:30573839:+ chr13:31030841-31191734:- chr13:31147976:+ chr13:51699466,chr13:51699466 chr13:30567387,chr13:30567384 NA NA chr13:52273602,chr13:52273602 chr13:31141524,chr13:31141521 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 10 14 24 89 21 ENST00000298125.7 unknown downstream upstream mismatches(4) TCCGAGGACAG___GACAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTT___CTCCATGTTCATGCATGTCTTTTAACCCGGAAACAAGAAGACTGTCCATAGGTCTAGACAATGGTACAATCTCA|AGACGAGGTTTCACCAGGTTGCCGTGGCTGATCTGGAACTCCTGGTCTCAAGTGATCTACCCAACTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCGGCCTAATCTAGCATTTTCTAAAAGGAAGGACCCAGCAGTGAACGGCAATATCAATAATCATGTTCAAG SEDRTVRVWLKRDSGQYWPSVYHAMPSPCSCMSFNPETRRLSIGLDNGTIS|rrgftrlpwliwnswsqviyptqppkvlglqa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24488 EML4::ALK ENSG00000143924.19::ENSG00000171094.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2265 TRUE 4150 TRUE 1573 EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42264951:+ chr2:42396493-42559688:+ chr2:42492091:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr2:42266817,chr2:42266818 chr2:29225228,chr2:29225227 NA NA chr2:42493957,chr2:42493958 chr2:29448094,chr2:29448093 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 10 10 25 66 70 ENST00000401738.3 ENST00000389048.8 downstream downstream duplicates(2),mismatches(3) TCAGATGATAGCCGTAATAAATTGTCGAAAATACCTTCAACACCCAAATTAATACCAAAAGTTACCAAAACTGCAGACAA___GCATAAAGATGTCATCATCAACCAAG___CAAAAATGTCAACTCGCGAAAAAAACAGCCAAG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCG___GGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAG SDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQAKMSTREKNSQ|vYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Lung,Breast,Large_intestine,Intrathoracal,Thyroid,Soft_tissue,Uterus_corpus,Kidney,Salivary_gland,Liver,Gallbladder/Biliary_system,Pleura,Skin,Brain,Ovary exact TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Thyroid carcinoma KIDNEY,LUNG,LUNG,LUNG,LUNG,LUNG,THYROID exact 42472827|42472827,42492091|42491871,42491871,42492091|42491871,42522656,42552694,42492091|42491871|42491871|42492091 FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|TRUE 29446394|29445473,29446394|29446394,29446394,29446394|29446394,29446394,29446394,29449940|29449940|29450538|29450538 TRUE|FALSE,TRUE|TRUE,TRUE,TRUE|TRUE,TRUE,TRUE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,YES,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 24489 EML4::ALK ENSG00000143924.19::ENSG00000171094.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2266 TRUE 4150 TRUE 1573 EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42264731:+ chr2:42396493-42559688:+ chr2:42491871:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr2:42266817,chr2:42266818 chr2:29225228,chr2:29225227 NA NA chr2:42493957,chr2:42493958 chr2:29448094,chr2:29448093 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 5 7 18 377 70 ENST00000318522.10 ENST00000389048.8 downstream downstream duplicates(1),mismatches(1) GCAAGAATGCTACTCCCACCAAAAG___CATAAAACGACCATCACCAGCTGAAAAGTCACATAATTCTTGGGAAAATTCAGATGATAGCCGTAATAAATTGTCGAAAATACCTTCAACACCCAAATTAATACCAAAAGTTACCAAAACTGCAGACAA___GCATAAAGATGTCATCATCAACCAAG|TGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCG___GGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAA KNATPTKSIKRPSPAEKSHNSWENSDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQ|vYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Lung,Breast,Large_intestine,Intrathoracal,Thyroid,Soft_tissue,Uterus_corpus,Kidney,Salivary_gland,Liver,Gallbladder/Biliary_system,Pleura,Skin,Brain,Ovary exact TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Thyroid carcinoma KIDNEY,LUNG,LUNG,LUNG,LUNG,LUNG,THYROID exact 42472827|42472827,42492091|42491871,42491871,42492091|42491871,42522656,42552694,42492091|42491871|42491871|42492091 FALSE|FALSE,FALSE|TRUE,TRUE,FALSE|TRUE,FALSE,FALSE,FALSE|TRUE|TRUE|FALSE 29446394|29445473,29446394|29446394,29446394,29446394|29446394,29446394,29446394,29449940|29449940|29450538|29450538 TRUE|FALSE,TRUE|TRUE,TRUE,TRUE|TRUE,TRUE,TRUE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,YES,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 24490 EML4::ALK ENSG00000143924.19::ENSG00000171094.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4150 TRUE 1573 EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42264951:+ chr2:42396493-42559688:+ chr2:42492091:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29224678:- chr2:29415640-30144452:- chr2:29447544:- chr2:42266817,chr2:42266818 chr2:29225228,chr2:29225227 NA NA chr2:42493957,chr2:42493958 chr2:29448094,chr2:29448093 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman |Protein_kinase_domain(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%) 1 2 25 66 11 ENST00000401738.3 ENST00000431873.6 downstream downstream duplicates(1),mismatches(1) CCAGAAAGCAAGAATGCTACTCCCACCAAAAG___CATAAAACGACCATCACCAGCTGAAAAGTCACATAATTCTTGGGAAAATTCAGATGATAGCCGTAATAAATTGTCGAAAATACCTTCAACACCCAAATTAATACCAAAAGTTACCAAAACTGCAGACAA___GCATAAAGATGTCATCATCAACCAAG___CAAAAATGTCAACTCGCGAAAAAAACAGCCAAG|GTAACCCTAATCTGATCACGGTCGGTCCATTGCATAGAGGAGGGAACTGAGCACATAGCGGGTGACTCATTTGCCCTGGCCCATGTGTTGGGGGGCTGGGCTTTACACACAGAATCTACCCACTGAATCACAATTTTGTTCTGGCTTCCATGGAGTTTGCCTTCCAGAACATCCTCACATGTAGGAGTGATAATGGTCACTCACATTGGTAGAGCTCTTTAGGATTTTTCAAAAC PESKNATPTKSIKRPSPAEKSHNSWENSDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQAKMSTREKNSQ|gnpnlitvgplhrggn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Lung,Breast,Large_intestine,Intrathoracal,Thyroid,Soft_tissue,Uterus_corpus,Kidney,Salivary_gland,Liver,Gallbladder/Biliary_system,Pleura,Skin,Brain,Ovary exact TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Thyroid carcinoma KIDNEY,LUNG,LUNG,LUNG,LUNG,LUNG,THYROID exact 42472827|42472827,42492091|42491871,42491871,42492091|42491871,42522656,42552694,42492091|42491871|42491871|42492091 FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|TRUE 29446394|29445473,29446394|29446394,29446394,29446394|29446394,29446394,29446394,29449940|29449940|29450538|29450538 FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,YES,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 24497 PTPN3::CPOX ENSG00000070159.14::ENSG00000080819.9 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PTPN3 ENSG00000070159.14 protein_coding - - chr9:109375466-109498313:- chr9:109404448:- chr9:112137746-112260593:- chr9:112166728:- CPOX ENSG00000080819.9 protein_coding - + chr3:98579446-98593648:- chr3:98591060:+ chr3:98298290-98312492:- chr3:98309904:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site CDS translocation/5'-5' high none FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%),PDZ_domain(100%)| FERM_C(100%),FERM_M(100%),FERM_N(100%),PDZ(100%)| 8 16 4 135 170 ENST00000262539.7 unknown upstream upstream mismatches(2) GAACACACGCATGACCAAGTGGTGATGTTCATCAAAGCCAGCCGGGAGTCCCACTCACGGGAGCTGGCCCTGGTGATCAGGAGGAGAG___CTGTCCGCTCATTTGCTGACTTCAAGTCTGAAGATGAACTGAACCAGCTTTTCCCCGAAGCCATTTTCCCCATGTGTCCGGAGGGTGGGGACACTTTGGAGGGATCCATGGCACAGCTAAAGAAGGGCCTCGAAAGCGGGACGGTGCTGATCCAGTTTGAG|CTTCCTCTGAAAGATTTCCATGAACAACAGAAATGCTCACCCCAGCCTTTTCGAAAACACACCCATCTTGAAGTACACAGCTGATGCCGCCACCTCCTGTGTATAGAAATGTAAAAAAGGAGAGAATGTAAGAGTATGTGCAAAACTGAAAGCAACACTTGCATGAAGATGGTTATTTTCCCGTTTCCCAAATCTTTTATATCAG EHTHDQVVMFIKASRESHSRELALVIRRRAVRSFADFKSEDELNQLFPEAIFPMCPEGGDTLEGSMAQLKKGLESGTVLIQFE|lplkdfheqqkcspqpfrkhthlevhs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24498 ALK::PTPN3 ENSG00000171094.18::ENSG00000070159.14 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2268 FALSE NA FALSE NA ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29275099:- chr2:29415640-30144452:- chr2:29497965:- PTPN3 ENSG00000070159.14 protein_coding - - chr9:109375466-109498313:- chr9:109457399:- chr9:112137746-112260593:- chr9:112219679:- chr2:29266948,chr2:29266958 chr9:109462844,chr9:109462851 NA NA chr2:29489814,chr2:29489824 chr9:112225124,chr9:112225131 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none MAM_domain__meprin/A5/mu(100%)|FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(78%),FERM_central_domain(100%),PDZ_domain(100%),Protein-tyrosine_phosphatase(100%) MAM(100%)|FERM_C(100%),FERM_M(100%),FERM_N(3%),PDZ(100%),Y_phosphatase(100%),Y_phosphatase3(100%) 7 14 6 22 123 ENST00000389048.8 ENST00000262539.7 upstream downstream duplicates(5),low_entropy(1),mismatches(1) CTGCTACCTCACCA___TTAGCGGAGAGGACAAGATCCTGCAGAATACAGCACCCAAATCAAGAAACCTGTTTGAGAGAAACCCAAACAAGGAGCTGAAACCCGGGGAAAATTCACCAAGACAGACCCCCATCTTTGACCCTACAG|AAACAAGACACTGGCCAGGTTCTTCTGGATATGGTGCACAACCACCTGGGTGTGACTGAAAAGGAATATTTTGGTTTACAGCATGATGACGACTCCGTGGACTCTCCT___AGATGGCTGGAAGCAAGCAAAGCCATCAGGAAGCAGTTAAAAG___GAGGTTTCCCCTGTACCCTGCATTTTCGAGTAAGA CYLTISGEDKILQNTAPKSRNLFERNPNKELKPGENSPRQTPIFDPT|etrhwpgssgygaqppgcd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification FALSE NA NA NA NA NA NA NA NA NA 24501 KATNAL1::ZC3H13 ENSG00000102781.14::ENSG00000123200.17 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2269 TRUE 4154 TRUE 1574 KATNAL1 ENSG00000102781.14 protein_coding - - chr13:30202630-30307551:- chr13:30307331:- chr13:30776767-30881688:- chr13:30881468:- ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:45989097:- chr13:46528600-46626894:- chr13:46563232:- chr13:30284630,chr13:30284634 chr13:46001761,chr13:46001762 NA NA chr13:30858767,chr13:30858771 chr13:46575896,chr13:46575897 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 3 21 2 54 252 ENST00000380615.8 ENST00000242848.8 upstream downstream duplicates(6),mismatches(2) CGGCGGCGGCGGCGGCCTGCGCCCCACCCGCACCCCATCTGGACCGCATCGCTGAATGTGCCCGGACCTGCGCCTTCTGG|GTCTACTTCCCCAGCAGGACAGCATCATTCTCCTATATCTTCTAGACATCACTCATCTTCCTCACAATCAGGATCATCTATTCAAAGACATTCTCCTTCTCCTCGTCGAAAAAGAACTCCTTCACCATCTTATCAGCGGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24502 KATNAL1::ZC3H13 ENSG00000102781.14::ENSG00000123200.17 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4154 TRUE 1574 KATNAL1 ENSG00000102781.14 protein_coding - - chr13:30202630-30307551:- chr13:30306940:- chr13:30776767-30881688:- chr13:30881077:- ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:45989097:- chr13:46528600-46626894:- chr13:46563232:- chr13:30284630,chr13:30284634 chr13:46001761,chr13:46001762 NA NA chr13:30858767,chr13:30858771 chr13:46575896,chr13:46575897 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 4 3 21 252 ENST00000441394.1 ENST00000242848.8 upstream downstream duplicates(3) CGGTCTTGGTGGGGTAGCTCGGACTGGCGAACTACAAAGCCCGGCGGCCCCGACCGCCGGGAAAGACCGATAAACTTTGAGCGGACCGGGACAGAAAAAAAAATCTCTCTTTGTCTTGAGGGGGCTGTTGAGTGGTCGCGGACCTGGGCTCTGTGCGTTGGGAAAGGGAAGTGGAG|GTCTACTTCCCCAGCAGGACAGCATCATTCTCCTATATCTTCTAGACATCACTCATCTTCCTCACAATCAGGATCATCTATTCAAAGACATTCTCCTTCTCCTCGTCGAAAAAGAACTCCTTCACCATCTTATCAGCGGACACTAACTCCACCTTTACGACGCTCTGCCTCTCCTTATCCTTCACATTCTTTGTCGTCTCCCCAGAGAAAGCAGAGTCCTCCAAGACATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24503 KATNAL1::ZC3H13 ENSG00000102781.14::ENSG00000123200.17 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4154 TRUE 1574 KATNAL1 ENSG00000102781.14 protein_coding - - chr13:30202630-30307551:- chr13:30306713:- chr13:30776767-30881688:- chr13:30880850:- ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:45989097:- chr13:46528600-46626894:- chr13:46563232:- chr13:30284630,chr13:30284634 chr13:46001761,chr13:46001762 NA NA chr13:30858767,chr13:30858771 chr13:46575896,chr13:46575897 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 0 1 4 27 252 ENST00000441394.1 ENST00000242848.8 upstream downstream duplicates(2) CAGGGATGAGCAGCCGCCCAAGCTGCAGGGCCTCGGGTCTTCGGCGCCTCTGACCCTCGCAGGTTaCTGCCTTTCGGTGCAGAACCGTATGTATGTCACACATTGGATGTGAGACCTGAGAAACCGTGTTTTAACAG|GTCTACTTCCCCAGCAGGACAGCATCATTCTCCTATATCTTCTAGACATCACTCATCTTCCTCACAATCAGGATCATCTATTCAAAGACATTCTCCTTCTCCTCGTCGAAAAAGAACTCCTTCACCATCTTATCAGCGGACACTAACTCCACCTTTACGACGCTCTGCCTgTCCTTATCCTTCACATTCTTTGTCGTCTCCCCAGAGAAAGCAGAGTCCTCCAAGACATCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24504 HIP1::CFTR ENSG00000127946.17::ENSG00000001626.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HIP1 ENSG00000127946.17 protein_coding - + chr7:75533298-75738962:- chr7:75586910:+ chr7:75162619-75368280:- chr7:75216228:+ CFTR ENSG00000001626.18 protein_coding + + chr7:117287120-117715971:+ chr7:117627522:+ chr7:116927174-117356025:+ chr7:117267576:+ chr7:75587779,chr7:75587779 chr7:117620613,chr7:117620610 NA NA chr7:75217097,chr7:75217097 chr7:117260667,chr7:117260664 NA NA antisense sense unknown intron CDS/splice-site deletion/3'-3' high none |ABC_transporter(52%) |ABC_tran(48%) 9 11 2 13 33 unknown ENST00000685018.2 downstream upstream none GCACAGCTGGCCATACCCCTCGCTCAGGTGGCCCTTTTAGGAAGAGGAGGGGAAACAGAGTCAACAACAAGAACATAACAGTCAAGAGATCTGCAGCCAGGAATTCTCTG|ATGCGATCTGTGAGCCGAGTCTTTAAGTTCATTGACATGCCAACAGAAGGTAAACCTACCAAGTCAACCAAACCATACAAGAATGGCCAACTCTCGAAAGTTATGATTATTGAGAATTCACACGTGAAGAAAGATGACATCTGGCCCTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24510 NCBP1::CSGALNACT1 ENSG00000136937.13::ENSG00000147408.16 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCBP1 ENSG00000136937.13 protein_coding + + chr9:97633668-97673748:+ chr9:97645732:+ chr9:100395950-100436030:+ chr9:100408014:+ CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19694237:- chr8:19261672-19615540:- chr8:19551748:- chr9:97646135 chr8:19694398 NA NA chr9:100408417 chr8:19551909 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none MIF4G_domain(82%)|Chondroitin_N-acetylgalactosaminyltransferase(100%) MIF4G(67%)|CHGN(100%),Glyco_transf_7C(100%) 10 4 0 384 12 ENST00000375147.8 unknown downstream downstream duplicates(1) TCTGATCTTGTGAATTGTCATGTGATTGCCGCCCCATCAATGGTTGCTATGTTTGAAAATTTTGTAAGCGTAACTCAGGAAGAAGATGTACCTCAG___GTGCGACGAGATTGGTATGTGTATGCATTTCTGTCATCTTTGCCCTGGGTTGGAAAGGAGTTGTACGAAAAGAAAGATGCAGAGATGGACCGCATCTTTGCCAACACTGAAAGCTATCTTAA|TTTGTACATCTGTTGTATCTTTGTAGCCAAAAGGAAGTGGAAAGTTGTGAAAATATCAG SDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLn|lyiccifvakrkwkvvkis NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24512 SND1::ENSG00000227743 ENSG00000197157.11::ENSG00000227743.2 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SND1 ENSG00000197157.11 protein_coding + + chr7:127652194-128092609:+ chr7:127991056:+ chr7:127292248-127732661:+ chr7:127631109:+ ENSG00000227743 ENSG00000227743.2 lncRNA - + chr7:121643334-121686363:- chr7:121657461:+ chr7:121283388-121326417:- chr7:121297515:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Staphylococcal_nuclease_homologue(77%)| SNase(44%)| 2 1 7 808 12 ENST00000354725.8 unknown downstream upstream none CGTCTTCAGTGGTTCTCGTCTCAAACTCTATTTGCCAAAGGAAACTTGCCTTATCACCTTCTTGCTTGCAG___GCATTGAATGCCCCAGAGGAGCCCGAAACCTCCCAGGCTTGGTGCAGGAAGGAGAGCCCTTCAGCGAGGAAGCTACACTTTTCACCAAGGAACTGGTGCTGCAGCGAGAG|AATTGTATAAAATACATGGTATTTGGTTTTAATCATACAATTTAACTTCTTGGACCACCAACTGAGGAGATAAACTCTTTGGAAATATGATAAAGAGGAAACAGAAAAACACAATGGAGGTAATAATCAGCAGCATGGCATATTTAGGAACCCATTGCAGAGTTCTATTTTATTACTGTGaCATGGATCACTG VFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQRE|ncikymvfgfnhti* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE staphylococcal nuclease and tudor domain containing 1 1 pancreas acinar carcinoma epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24515 NPL::USP20 ENSG00000135838.14::ENSG00000136878.14 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NPL ENSG00000135838.14 protein_coding + - chr1:182789293-182830384:+ chr1:182792817:- chr1:182758428-182799519:+ chr1:182761952:- USP20 ENSG00000136878.14 protein_coding + + chr9:129834698-129881828:+ chr9:129860937:+ chr9:132596977-132644107:+ chr9:132623216:+ chr1:182792373,chr1:182792375 chr9:129860337,chr9:129860328 NA NA chr1:182761508,chr1:182761510 chr9:132622616,chr9:132622607 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none |DUSP_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%) |DUSP(100%),UCH(100%),UCH_1(100%) 1 6 0 13 131 unknown ENST00000315480.9 upstream upstream mismatches(1) AATAGGAGAATAAACTTCTGAAGTACAGAGACCATATCTTCTATTTTTCTTCCCCAAGAGTCTTGGCTCAG|GACTCCCCGCCACCCTCCCACCCTCTGAAAGCTGTTCCTATTGCTGTGGCTGATGAAGGAGAGTCTGAGTCAGAGGAtGATGACCTGAAACCTCGAG___GCCTCACGGGCATGAAGAACCTCGGGAACTCCTGCTACATGAACGCcGCCCTGCAGGCCtTGTCCAATTG___CCCGCCGCTtACTCAtTTCTTCTTGGAGTGTGGCGGCCTGGTGCGCACAGATAAGAAGCCAGCCCTGTGCAAGAGCTACCAGAAGCTGGTCTCTGAGGTCTGGCATAAGAAACG___GCCAAG...CAGATTCGAGTGACACGGATGAGAAACGGGAGGGTGACCGGAGCCCATCAGAAGATGAGTTCTTGTCCTGTGACTCGAGCAGTGACCGGGGTGAGGGTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6855 chr9:129869605-129869671:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24519 SENP7::CSGALNACT1 ENSG00000138468.16::ENSG00000147408.16 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SENP7 ENSG00000138468.16 protein_coding - - chr3:101324205-101513241:- chr3:101493873:- chr3:101043049-101232085:- chr3:101212717:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19715024:- chr8:19261672-19615540:- chr8:19572535:- chr3:101474405,chr3:101474407 chr8:19716586,chr8:19716585 NA NA chr3:101193249,chr3:101193251 chr8:19574097,chr8:19574096 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none |Chondroitin_N-acetylgalactosaminyltransferase(100%) |CHGN(100%),Glyco_transf_7C(100%) 0 2 1 44 7 ENST00000394095.7 ENST00000695896.1 upstream downstream mismappers(1) GCAAAACCAGAGGATGTCCATGTTCAATCACCACTGTCCAAATTCAGAAGCTCAGAACGCTGGACTCTCCCTTTGCAG|TCTTAGGTATGTCTTTATCAGCAGCATAAAAACGGACTAATACAAGTACACAAGAATACAAAGAAAAGAACAGCAGACACTGGGGCCCACTTGAGGGTAGAGGATGGAAGGAGGATGTGGATCAAAAGCCTACTTATCAGG AKPEDVHVQSPLSKFRSSERWTLPLQ|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24520 LPAR1::STXBP5L ENSG00000198121.15::ENSG00000145087.14 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111030564:- chr9:113635543-113800750:- chr9:113792844:- STXBP5L ENSG00000145087.14 protein_coding + + chr3:120908072-121424761:+ chr3:121318475:+ chr3:120626919-121143608:+ chr3:121037322:+ chr9:111020478,chr9:111020480 chr3:121311087,chr3:121311085 NA NA chr9:113782758,chr9:113782760 chr3:121029934,chr3:121029932 NA NA sense sense unknown intron CDS/splice-site translocation high none |Lethal_giant_larvae(Lgl)_like__C-terminal(100%) |Lgl_C(100%) 1 2 0 16 147 unknown ENST00000273666.10 upstream upstream none GGCTATTGTAAACGGGAAcAAGAAAACTATTTCCAGCTGTGTGACAACCAAGACGACAAAAAGCATTGCAGAGAATATTATTGCCACAAGGACCCTGCTTC...CGGGAGGAGGGGCATTTTGGAGCACGTGTTTGGCATCTGTGAACCTTTTGTTAG|GTTTAACTGAACTGAATGACAGTCCAGTTCCCCTAGAACTTGAGCGCTGCAAGTCTCCTACCTC...TGCAGTTCTGGAAAACGTCTTTCTAGTGCCGATGTTTCAAAAGTAAATCGCTGGGGTCCTGGAAGACCACCATTTCGAAAGGCCCAGTCAGCAGCCTGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24521 POLR1C::RSPH9 ENSG00000171453.20::ENSG00000172426.16 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POLR1C ENSG00000171453.20 protein_coding + + chr6:43509702-43562419:+ chr6:43517377:+ chr6:43477440-43530156:+ chr6:43485115:+ RSPH9 ENSG00000172426.16 protein_coding + + chr6:43645036-43672600:+ chr6:43655562:+ chr6:43612773-43640337:+ chr6:43623299:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Radial_spokehead-like_protein(100%) none 4 5 2 562 12 ENST00000607635.2 ENST00000372163.5 downstream upstream none CGCGAGATAGAACCTCTAGTCTCGTGGAGAGATTGAAGATGGCGGCTTCTCAGGCGGTGGAGGAAATGCGGAGCCGCGTGGTTCTGGGGGAGTTTGGGGTTCGCAAT___GTCCATACTACTGACTTTCCCGGTAACTATTCCGGTTATGATGATGCCTGGGACCAGGACCGCTTCGAGAAG|GTCCAGATCAAGGAAGAGACCCGCTTGGTGTCTGTCATTGACCAGATTGACAAGGCTGTGGCCATCATCCCCCGAGGCGCCCTCTTCAAGACCCCTTTTGGACCCACCCATGTCAATCGGACCTTTGAAG___GACTGTCCTTGTCTGAGGCCAAGAAGCTCAGCTCCTACTTCCATTTCAGGGAGCCTGTTG MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEK|VQIKEETRLVSVIDQIDKAVAIIPRGALFKTPFGPTHVNRTFEGLSLSEAKKLSSYFHFREPV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24522 ENSG00000273329::SND1 ENSG00000273329.2::ENSG00000197157.11 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000273329 ENSG00000273329.2 lncRNA - - chr7:129604548-129611671:- chr7:129611362:- chr7:129244389-129251512:- chr7:129251203:- SND1 ENSG00000197157.11 protein_coding + + chr7:127652194-128092609:+ chr7:127694828:+ chr7:127292248-127732661:+ chr7:127334882:+ NA NA NA NA NA NA NA NA sense sense unknown exon CDS/splice-site inversion medium none |Staphylococcal_nuclease_homologue(94%),Tudor_domain(100%) |I-set(100%),Ig_3(100%),LRR_1(100%),LRR_5(100%),LRR_8(100%),SNase(99%),TUDOR(100%) 3 2 1 35 698 ENST00000608694.2 ENST00000354725.8 upstream upstream none CTCAAAAGCAACTGGATGAGCACAACGCGGACGCCCCGGAGAAGCGGCGCAAGCGGGCCCAAAATGGTTGCTGATCAGACGAGTGGCATCTCTCGCCCCCCTACCGCGGGAATTGGGACCTCCAGACTGTGCCTGGGGGATCG|CCCTGGGCATTTCCAGCTCGAGAGTTCCTTCGAAAGAAGCTGATTGGGAAGGAAGTCTGTTTCACGATAG-AAACAAGACTCCCCAGGGGCGAGAGTATGGCATGATCTACCTTGGAAAAG...TGCAGAGGGCTTAGCCACCCGGAGAGAAGGCATGAGAGCTAATAA___TCCTGAGCAGAACCGGCTTTCAGAATGTGAAGAACAAGCAAAGGCAGCCAAGAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-593 chr7:128081861-128081960:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE staphylococcal nuclease and tudor domain containing 1 1 pancreas acinar carcinoma epithelial oncogene, fusion translocation 24523 DCBLD2::LPAR1 ENSG00000057019.16::ENSG00000198121.15 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DCBLD2 ENSG00000057019.16 protein_coding - - chr3:98795941-98901695:- chr3:98808081:- chr3:98514785-98620539:- chr3:98526925:- LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111031910:- chr9:113635543-113800750:- chr9:113794190:- chr3:98802002 chr9:111032825 NA NA chr3:98520846 chr9:113795105 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none CUB_domain(100%),F5/8_type_C_domain(100%),LCCL_domain(100%)|7_transmembrane_receptor_(rhodopsin_family)(100%) CUB(100%),F5_F8_type_C(100%),LCCL(100%)|7tm_1(100%) 2 1 2 2122 2 ENST00000326840.11 unknown upstream downstream none TGCCAGTCCTGATATCAGAAATACTACCGTAACTCCAAATGTAACCAAAG___ATGTAGCGCTGGCTGCAGTTCTTGTCCCTGTGCTGGTCATGGTCCTCACTACTCTCATTCTCATATTAGTGTGTGCTTGGCACTGGAGAAACAG|GAACATTTTCTCCAAGGTAGTCTCAATACTTTGAG___AGAGGCTATACTTGAGGCTGCCATCAAGAGTGAGAAGTTTGAAGCTGG ASPDIRNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNr|nifskvvsil* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24524 ENSG00000285679::ATP11C ENSG00000285679.2::ENSG00000101974.15 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:7929413:+ chrX:7896484-8342427:+ chrX:7897454:+ ATP11C ENSG00000101974.15 protein_coding - + chrX:139726346-139945276:- chrX:139839880:+ chrX:138808505-139027435:- chrX:138922039:+ chrX:7940318,chrX:7940318 chrX:139778227,chrX:139778224 NA NA chrX:7908359,chrX:7908359 chrX:138860386,chrX:138860383 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' medium none none none 2 0 0 5 1 ENST00000659022.1 unknown downstream upstream none CAGCAGGTCGATTCAGGAGACAGGTGAAAACTTTATCACCGGGCAGCCTGGATGAACACCACAACTTTGATATCTTTCACTTAAAGGAAAGATAAGGGCATCCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAG|GTAAGCCGGAGGACCCTTCTTGTCCCTGAGTATTCCACTGTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24527 DELEC1::SENP7 ENSG00000173077.16::ENSG00000138468.16 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4158 TRUE 1575 DELEC1 ENSG00000173077.16 lncRNA + + chr9:114850968-115402644:+ chr9:115087454:+ chr9:117613248-118164923:+ chr9:117849733:+ SENP7 ENSG00000138468.16 protein_coding - - chr3:101324205-101513241:- chr3:101459052:- chr3:101043049-101232085:- chr3:101177896:- chr9:115091192,chr9:115091189 chr3:101474387,chr3:101474390 NA NA chr9:117853471,chr9:117853468 chr3:101193231,chr3:101193234 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Ulp1_protease_family__C-terminal_catalytic_domain(100%) |Peptidase_C48(100%) 2 0 0 3 26 ENST00000649121.1 ENST00000394095.7 downstream downstream none CACAGCCACATCCTTCAGTGCTGAAGTTGCCCCGACCGCTACAGAAGGGCCTGGTGTCCAAGCGGCCTGCAACAAAAGAAACAGAAGTTCTCAGCCAGGCT...CCCAGATTCAAATTCAGCTGAAGGACGGTTGCACCCTCAGGCTCCATCTGGCTTGAGAACCATTTGTTGTAGTGTGTGAAATCAGATGAGACTCACATCCTGTTATACCAG|TGGGAAAGAAGCCTAAGGAATAAAGTCATCTCTCTAGACCATAAAAATAAAAAACATATCCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24528 DELEC1::SENP7 ENSG00000173077.16::ENSG00000138468.16 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4158 TRUE 1575 DELEC1 ENSG00000173077.16 lncRNA + + chr9:114850968-115402644:+ chr9:115084383:+ chr9:117613248-118164923:+ chr9:117846662:+ SENP7 ENSG00000138468.16 protein_coding - - chr3:101324205-101513241:- chr3:101459052:- chr3:101043049-101232085:- chr3:101177896:- chr9:115091192,chr9:115091189 chr3:101474387,chr3:101474390 NA NA chr9:117853471,chr9:117853468 chr3:101193231,chr3:101193234 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |Ulp1_protease_family__C-terminal_catalytic_domain(100%) |Peptidase_C48(100%) 0 1 0 1290 26 ENST00000649121.1 ENST00000394091.5 downstream downstream none CGGAACTGCATTTCCAGACCACCCTCGTGGGTGGGCGTGTACACGACAAG|TGGGAAAGAAGCCTAAGGAATAAAGTCATCTCTCTAGACCATAAAAATAAA...AAGCAGACTGCGCACAATAAAGAAAAACGAAGAAAGGATGATGGCATTTCTCTTTTAATATCTGATACTCAGCCTGAAGGTTTGTGAACCTTAGAAAACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24534 ZNF28::URI1 ENSG00000198538.11::ENSG00000105176.18 NCIH2227 SRR8616112 SRR8652085 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF28 ENSG00000198538.11 protein_coding - - chr19:52797408-52857600:- chr19:52817944:- chr19:53300661-53360853:- chr19:53321197:- URI1 ENSG00000105176.18 protein_coding + - chr19:29923644-30016612:+ chr19:29976561:- chr19:30414551-30507519:+ chr19:30467468:- chr19:52813200,chr19:52813204 chr19:29978784,chr19:29978785 NA NA chr19:53316453,chr19:53316457 chr19:30469691,chr19:30469692 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none KRAB(23%),zf-C2H2(31%),zf-C2H2_6(16%),zf-met(40%)| 6 39 5 238 220 ENST00000596559.5 unknown upstream downstream duplicates(17),mismatches(25),multimappers(1) TGACGGTCACGCCGCGGCGGGCG___G?TTGACTTCTAAAGAATCTTGGTACGTGAGGAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAG|GTGGGTGTTATCTTCCCACCTTGTGAATCTGCGCTGGCCCTTCCTTTGACCAACATAACGTGGCCTTGCAGCTTCCATTCTTGCTGCTGAGATGCCCATAGAAAGTAAGCTGGACAAAAGAGCACATGGAGGCAGAGGCTCAACCAACAGCACTAACCACCAGACTTGAGGGTGAGGTCATTCTGGACAACAAAGCTGACCCAGCCACCAACTGGCTGCAACCAAAGCAGTGAGCCCACACAAGACTAGCAGAAGA MALPQ|vgvifppcesalalpltnitwpcsfhscc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24544 PPM1H::CACNA1C ENSG00000111110.12::ENSG00000151067.23 NCIH2227 SRR8616112 SRR8652085 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2272 FALSE NA FALSE NA PPM1H ENSG00000111110.12 protein_coding - - chr12:62643994-62935150:- chr12:62801816:- chr12:63037774-63328930:- chr12:63195596:- CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2448976:+ chr12:2079938-2807116:+ chr12:2558142:+ chr12:62798424,chr12:62798426 chr12:2180995,chr12:2180993 NA NA chr12:63192204,chr12:63192206 chr12:2290161,chr12:2290159 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Protein_phosphatase_2C(8%)|Ion_transport_protein(96%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage-gated_calcium_channel_subunit_alpha__C-term(100%),Voltage_gated_calcium_channel_IQ_domain(100%) PP2C(0%)|CAC1F_C(100%),Ca_chan_IQ(100%),GPHH(100%),Ion_trans(44%),PKD_channel(100%) 6 2 8 224 27 ENST00000228705.7 ENST00000682462.1 upstream upstream duplicates(3),mismappers(1),mismatches(3) CGCCTGCTGCAGCACCACATCACGGAGCAGCTGCAGGACATCGTGGACATCCTGAAGAACTCCGCCGTCCTGCCCCCTACCTGCCTGGGGGAGGAGCCTGAGAACACGCCCGCCAACAGCCGGACTCTGACCCGGGCAGCCTCCCTGCGCGGAGGGGTGGGGGCCCCGGGCTCCCCCAGCACGCCCCCCACACGCTTCTTTACCGAGAAGAAGATTCCCCATGAGTGCCTGGTCATCGGAGCGCTTGAAAGTGCATTCAAGGAAATG|GAACGAGTGGAATATCTCTTTCTCATAATTTTTACGGTGGAAGCGTTTTTAAAAGTAATCGCCTATGGACTCCTCTTTCACCCCAATGCCTACCTCCGCAACGGCTGGAACCTACTAGATTTTATAATTGTGGTTGTGGG___GCTTTTTAGTGCAATTTTAGAACAAGCAACCAAAGCAGATGGGGCAAAC RLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEM|ERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKADGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24545 SBNO1::RILPL1 ENSG00000139697.14::ENSG00000188026.13 NCIH2227 SRR8616112 SRR8652085 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2273 FALSE NA FALSE NA SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123364701:- chr12:123773656-123849394:- chr12:123849248:- RILPL1 ENSG00000188026.13 protein_coding - - chr12:123470054-123533719:- chr12:123498765:- chr12:123954601-124018266:- chr12:123983312:- chr12:123364363 chr12:123499123 NA NA chr12:123848910 chr12:123983670 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Rab_interacting_lysosomal_protein(100%) |RILP(100%) 0 5 7 147 140 ENST00000602398.3 ENST00000376874.9 upstream downstream duplicates(5),low_entropy(1),mismatches(2) GTCAAGATGGCGGCGGGGAGGTAGGCAGAGCAGGACGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTcCTGGCGCCGGGTCCCGCGGGGAAA|TTACAGCAGCAGCAGACACGGCTGATGAAGATCAACCATGACCTTCGGCACCGGGTCACGGTGGTGGAGGCCCAGGGGAAAGCCCTGATCGAACAGAAGGTGGAGCTGGAGGCAGACCTGCAGACCAAGGAGCAGGAGATGGGCAGCCTGCGAGCAGAGCTGGGGAAGTTGCGAGAGAGGCTGCAGGGGGAGCACAGCCAGAATGGGGAGGAGGAGCCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24591 MARK4::ENSG00000267924 ENSG00000007047.16::ENSG00000267924.1 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MARK4 ENSG00000007047.16 protein_coding + + chr19:45079288-45305284:+ chr19:45271708:+ chr19:45582546-45808542:+ chr19:45774966:+ ENSG00000267924 ENSG00000267924.1 lncRNA - - chr19:23817599-23874701:- chr19:23823906:- chr19:24000401-24057503:- chr19:24006708:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein_kinase_domain(80%)| BLOC1S3(100%),Gemin7(100%),KAP_NTPase(100%),LRR_1(100%),LRR_6(100%),PK_Tyr_Ser-Thr(64%),Pkinase(64%),SUZ-C(100%),Sec6(100%),TRAPP(100%)| 57 58 61 219 106 ENST00000262891.9 ENST00000599944.1 downstream downstream duplicates(8),inconsistently_clipped(2),mismatches(12) AAAATATTGTACACAGGGACCTGAAG___GCTGAGAACCTCTTGCTGGATGCCGAGGCCAACATCAAGATTGCTGACTTTGGCTTCAGCAACGAGTTCACGCTGGGATCGAAGCTGGACACGTTCTGCGGGAGCCCCCCATATGCCGCCCCGGAGCTGTTTCAGGGCAAGAAGTACGACGGGCCGGAGGTGGACATCTGGAGCCTGGGAGTCATCCTGTACACCCTCGTCAGCGGCTCCCTGCCCTTCGACGGGCACAACCTCAAG|GTGTGAGACCCCAAGCCAGGAGAGACCCATGACCTCAGGTGCCATCAGGAGAACTTAAACCTGAAGAAGGGATCAGCTATCCCACAACCCAGTGCCCCTCCCAGACAGCACAACAGAATCTAAGGGGCTACAGGATGATTCCAGGAACAGTGCACTACAGGACCACG___TTGCAGGAATCGTGCCTTGGATTCACCACAGTTGGCTGAAACTGGTAGCCCAAGACAAGTGGACCAGCCAGAAGGACCCAGG NIVHRDLKAENLLLDAEANIKIADFGFSNEFTLGSKLDTFCGSPPYAAPELFQGKKYDGPEVDIWSLGVILYTLVSGSLPFDGHNLK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE MAP/microtubule affinity-regulating kinase 4 CAMK CAMKL MARK Q96L34 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24593 CDK17::CFAP54 ENSG00000059758.8::ENSG00000188596.11 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK17 ENSG00000059758.8 protein_coding - - chr12:96278261-96400480:- chr12:96311052:- chr12:96672039-96794258:- chr12:96704830:- CFAP54 ENSG00000188596.11 protein_coding + - chr12:96489571-96875555:+ chr12:96556232:- chr12:96883349-97269333:+ chr12:96950010:- chr12:96302688,chr12:96302692 chr12:96586164,chr12:96586165 NA NA chr12:96696466,chr12:96696470 chr12:96979942,chr12:96979943 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 45 35 33 497 148 ENST00000261211.8 unknown upstream downstream duplicates(10),mismatches(1) CAAGCTTCTGGGACATCATCTGATGAAGTCCAGTCACCTACAGGTGTTTGTCTCAGAAATCGTATACATAGACGGATCTCAATGGAG___GATTTAAATAAGCGGTTATCACTGCCTGCAGACATCAGAATACCTGATGGATATCTTGAAAAGTTGCAGATAAACAGTCCACCATTTGACCAACCAATGAGTCGAAGGTCTCGTAGAGCTTCCTTA|GATCAGCACTTTTTGAATCTTGTTTAAGAAGATCTTCCCTACTCCAAGCTTAGAAATATATTCTACCATATCTTCTTCTAAAAGTTTTTAAGATTTTTTTTTTACATTTAACTCTTTGGTGCATCTGGAAGATATTTTTGTGTATGGGAAGGTAAGAAATGTAATTTGGTTTTATCCATATGGATATCCAATTATCCAATGAATATGAGGTATTCTAGCACTTTGAAATAAATCTTGACTTATGTTAGAGCGAGATCC QASGTSSDEVQSPTGVCLRNRIHRRISMEDLNKRLSLPADIRIPDGYLEKLQINSPPFDQPMSRRSRRASL|dqhflnlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 17 CMGC CDK PCTAIRE Q00537 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24596 ELAVL1::FBN3 ENSG00000066044.15::ENSG00000142449.13 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2274 TRUE 4165 TRUE 1576 ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7981083:- chr19:8023457-8070543:- chr19:8045967:- FBN3 ENSG00000142449.13 protein_coding - - chr19:8065402-8149592:- chr19:8097006:- chr19:8130286-8214476:- chr19:8161890:- chr19:7975751 chr19:8099734 NA NA chr19:8040635 chr19:8164618 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|Calcium-binding_EGF_domain(44%),TB_domain(22%) RRM_1(18%),RRM_5(59%)|EGF_CA(36%),TB(10%),cEGF(32%),hEGF(35%) 12 34 27 1311 66 ENST00000407627.7 ENST00000600128.6 upstream downstream duplicates(10),mismatches(2),multimappers(2) TGAGTTACGAAGCCTGTTCAGCAGCATTGGTGAAGTTGAATCTGCAAAACTTATTCGGGATAAAGTAGCAG___GACACAGCTTGGGCTATGGCTTTGTGAACTACGTGACCGCGAAGGATGCAGAGAGAGCGATCAACACGCTGAACGGCTTGAGGCTCCAGTCAAAAACCATTAAG|ATGTCGATGAGTGTGGCAGCAGGGAGAGTCCCTGCCAGCAGAATGCTGACTGCATCAACATCCCCGGTAGCTACCGCTGCAAGTGCACCCGAGGGTACAAACTGTCGCCAGGCGGGGCTTGTGTGG___GACGGAATGAGTGTCGGGAGATCCCGAATGTCTGTAGCCATGGTGACTGCATGGACACAGAAGGCAGC...___ACATTGACGAGTGTGACCGGCAGCCTTGT ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK|msmsvaagrvpasrmltastspvataasapegtncrqaglvwdgmsvgrsrmsvamvtawtqka NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24597 ELAVL1::FBN3 ENSG00000066044.15::ENSG00000142449.13 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4165 TRUE 1576 ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7981083:- chr19:8023457-8070543:- chr19:8045967:- FBN3 ENSG00000142449.13 protein_coding - - chr19:8065402-8149592:- chr19:8097414:- chr19:8130286-8214476:- chr19:8162298:- chr19:7975751 chr19:8099734 NA NA chr19:8040635 chr19:8164618 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|Calcium-binding_EGF_domain(46%),TB_domain(22%) RRM_1(18%),RRM_5(59%)|EGF_CA(37%),TB(10%),cEGF(32%),hEGF(40%) 0 2 31 1311 4 ENST00000407627.7 ENST00000600128.6 upstream downstream duplicates(4),mismatches(1),multimappers(1) CAGGATGAGTTACGAAGCCTGTTCAGCAGCATTGGTGAAGTTGAATCTGCAAAACTTATTCGGGATAAAGTAGCAG___GACACAGCTTGGGCTATGGCTTTGTGAACTACGTGACCGCGAAGGATGCAGAGAGAGCGATCAACACGCTGAACGGCTTGAGGCTCCAGTCAAAAACCATTAAG|ACATTGATGAGTGTGGGGAGATCCCCGCCATCTGTGCCAATGGCATCTGCATAAACCAGATCGGGAGTTTCCGCTGCGAGTGCCCCGCAGGCTTCAACTACAACAGCATCCTGCTGGCTTGTGAAG___ATGTCGATGAGTGTGGCAGCAGGGAGAGTCCCTGCCAGCAGAATGCTGACTGCATCAACATCCCCGGTAGCTACCGCTGCAAGTGCACCCGAGGGTACAAACTGTCGCCAGGCGGGGCTTG QDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK|tlmsvgrsppsvpmasa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24598 ELAVL1::FBN3 ENSG00000066044.15::ENSG00000142449.13 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4165 TRUE 1576 ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7981083:- chr19:8023457-8070543:- chr19:8045967:- FBN3 ENSG00000142449.13 protein_coding - - chr19:8065402-8149592:- chr19:8096080:- chr19:8130286-8214476:- chr19:8160964:- chr19:7975751 chr19:8099734 NA NA chr19:8040635 chr19:8164618 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)|Calcium-binding_EGF_domain(39%),TB_domain(22%) RRM_1(18%),RRM_5(59%)|EGF_CA(35%),TB(10%),cEGF(32%),hEGF(24%) 1 0 5 1311 111 ENST00000407627.7 ENST00000600128.6 upstream downstream duplicates(1) AGGATGAGTTACGAAGCCTGTTCAGCAGCATTGGTGAAGTTGAATCTGCAAAACTTATTCGGGATAAAGTAGCAG___GACACAGCTTGGGCTATGGCTTTGTGAACTACGTGACCGCGAAGGATGCAGAGAGAGCGATCAACACGCTGAACGGCTTGAGGCTCCAGTCAAAAACCATTAAG|ACATTGACGAGTGTGACCGGCAGCCTTGTGGAAATGGGACCTGCAAGAACATCATTGGCTCCTACAACTGCCTCTGCTTCCCTGGCTTTGTGGTGACACACAATGGGGATTGTGTGG___ACACCAATGAGTGCCTCAGCCTTGCAGGAACCTGCCTACCCGGCACTTGCCAGAACCTCGAGGGCTCCTTCCGCTGCATCTG DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK|tltsvtgslvemgpartslapttasaslalw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24599 POLB::IKBKB ENSG00000070501.12::ENSG00000104365.16 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA POLB ENSG00000070501.12 protein_coding + + chr8:42338454-42371808:+ chr8:42352568:+ chr8:42195972-42229326:+ chr8:42210086:+ IKBKB ENSG00000104365.16 protein_coding + - chr8:42271302-42332460:+ chr8:42330071:- chr8:42128820-42189978:+ chr8:42187589:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon inversion/3'-3' high none Fingers_domain_of_DNA_polymerase_lambda(50%),Helix-hairpin-helix_domain(100%)| DNA_pol_lambd_f(35%),HHH_5(46%),HHH_8(100%)| 17 7 23 350 58 ENST00000265421.9 unknown downstream downstream duplicates(9),mismappers(6),mismatches(3) AAAAGCAGCATCTGTTATAGCAAAATACCCACACAAAATAAAGAGTGGAGCTGAAGCTAAGAAATTG___CCTGGAGTAGGAACAAAAATTGCTGAAAAGATTGATGAGTTTTTAGCAACTGGAAAATTACGTAAACTGGAAAAG___ATTCGGCAGGATGATACGAGTTCATCCATCAATTTCCTGACTCGAGTTAGTGGCATTGG___TCCATCTGCTGCAAGGAAGTTTGTAGATGAAGGAATTAAAACACTAGAAG|ACATGCAAGTAAGCAATGAACTGATCAAAACATTATCATGCCAGGAGGAGGAGAGCAGCAAGAGATATAGAATGTCCACAGACTGGAGGAGGACATGCGACTACATCAGCAAAGGCTGCAATTCACAGTGGTATCCCTTGTAATTCTTCCAAAAGCTTAAAGTTAGGGGAGGTTAGCAAGTGATTAGCAGGTAAAGGCCATGTAAAGATCTAAGCAAATG KAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLE|dmqvsneliktlscqeeesskryrmstdwrrtcdyiskgcnsqwypl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24600 PCNT::C21orf58 ENSG00000160299.19::ENSG00000160298.18 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2275 FALSE NA FALSE NA PCNT ENSG00000160299.19 protein_coding + + chr21:46324124-46445769:+ chr21:46326589:+ chr21:47744038-47865682:+ chr21:47746503:+ C21orf58 ENSG00000160298.18 protein_coding - - chr21:46300181-46323875:- chr21:46302576:- chr21:47720095-47743789:- chr21:47722490:- chr21:46331317 chr21:46309043 NA NA chr21:47751231 chr21:47728957 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Domain_of_unknown_function_(DUF4587)(88%) |DUF4587(5%) 22 11 14 204 109 ENST00000703224.1 ENST00000397682.7 downstream downstream duplicates(6),low_entropy(1),mismatches(3) GCGCGGAGTCTGAGGGAGATGGAAGTTGAGCAAGAGCAGCGGCGCAGAAAGGTGGAGGCCGGGAGGACGAAG___CTTGCTCACTTCCGACAGAGAAAAACAAAAGGTGACAGTTCGCATTCGGAGAAAAAGACGGCGAAGAGGAAGGGCTCGGCTGTCGATGCGTCTGTCCAGGAGGAGAGTCCGGTAACCAAGGAGGACAGCGCACTCTGTGGAGGAGGGGACATTTGCAAAAGCACATCATGTGACGACACCCCTGATGGGGCAGGAGGGGCCTTTGCAGCTCAG|ACATGGTGGAGCTGCTGCTGCTGCAGAACGCACAGGTGCACCAGTTGGTCCTGCAGAACTGGATGCTCAAGGCCCTGCCCCCAGCCCTGCAG___ACTTTTGAGTTCTGGCAACCTACAGACTCCACCTGG?CCTGAGACTCATGACTCAGCTGATCCCGTGG MEVEQEQRRRKVEAGRTKLAHFRQRKTKGDSSHSEKKTAKRKGSAVDASVQEESPVTKEDSALCGGGDICKSTSCDDTPDGAGGAFAAQ|twwsccccrthrctswscrtgcsrpcpqpcrllssgnlqtppgpethdsadpv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24601 C21orf58::PCNT ENSG00000160298.18::ENSG00000160299.19 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2276 FALSE NA FALSE NA C21orf58 ENSG00000160298.18 protein_coding - - chr21:46300181-46323875:- chr21:46311456:- chr21:47720095-47743789:- chr21:47731370:- PCNT ENSG00000160299.19 protein_coding + + chr21:46324124-46445769:+ chr21:46440083:+ chr21:47744038-47865682:+ chr21:47859996:+ chr21:46310744,chr21:46310749 chr21:46439748,chr21:46439743 NA NA chr21:47730658,chr21:47730663 chr21:47859661,chr21:47859656 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4587)(11%)|Pericentrin-AKAP-450_domain_of_centrosomal_targeting_protein(100%) DUF4587(0%)|PACT_coil_coil(100%) 12 8 18 124 186 ENST00000397682.7 ENST00000359568.10 upstream upstream duplicates(2),low_entropy(1) CAAGGATCATCCTGCCTACG___GTCCCCCAGCCTCCTGCCACCATCATTCAGCAGCTCCCTCAGCAGCCACTCATAGCACAGATTCCTCCTCCCCAGGCCTTCCCTACTCAACGGTCAGGAAGTATTAAGGAAG|AGGTCGGAAAGGTCTGCTTGGAAGCCAGACGAAACGGCTCCACAGAGTTCCCTGAGGCGCCCAGACCCCGGCCGGCTTCCACCAGCTGCCAGCGAGGAAGCACACACCAGCAATGTCAAG___ATGGAAAAATTGTACCTGCATTACTTG RIILPTVPQPPATIIQQLPQQPLIAQIPPPQAFPTQRSGSIKE|evgkvclearrngstefpeaprprpastscqrgsthqqcqdgkivpall NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24602 GRK5::DENND10 ENSG00000198873.12::ENSG00000119979.18 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE TRUE 2277 TRUE 4166 TRUE 1577 GRK5 ENSG00000198873.12 protein_coding + + chr10:119207571-119459745:+ chr10:119207969:+ chr10:120967083-121219257:+ chr10:120967481:+ DENND10 ENSG00000119979.18 protein_coding + + chr10:119104086-119137984:+ chr10:119129515:+ chr10:120863598-120897496:+ chr10:120889027:+ chr10:119225775 chr10:119123702 NA NA chr10:120985287 chr10:120883214 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Stabilization_of_polarity_axis(30%) |SPA(0%) 6 14 1 93 362 ENST00000392870.3 ENST00000361432.3 downstream upstream duplicates(1),mismatches(12) GCTGCTGGCTCCCCCGGCTCCGGCAGCAGCGGCGGCAGCCCGAGCAGCGGCAGCAGCAGCGGCAGCACCCCAGGCGCTGACAGCCCCGCCGGCCGGCTCCGTTGCTGACCGCCGACTGTCAATGGAGCTGGAAAACATCGTGGCCAACACGGTCTTGCTGAAAGCCAGGGAAG|GTTACGTCGCTGGATTTGTAGACTTGGAGGTGAGCAACAGACCAGACCTCTATGATGTGTTTGTGAATCTGGCAGAGAGTGAGATTACCATTGCTCCCCTTGCAAAAG___AGGCCATGGCAATGGGCAAACTGCACAAAGAAATGGGTCAGCTAATTGTTCAGTCTGCAGAAGATCCAGAGAAATCAGAGAGCCACGTTATACAG___GATATTGCTCTAAAAACAAG MELENIVANTVLLKARE|gYVAGFVDLEVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQDIALKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE G protein-coupled receptor kinase 5 AGC GRK GRK P34947 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24603 GRK5::DENND10 ENSG00000198873.12::ENSG00000119979.18 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4166 TRUE 1577 GRK5 ENSG00000198873.12 protein_coding + + chr10:119207571-119459745:+ chr10:119207969:+ chr10:120967083-121219257:+ chr10:120967481:+ DENND10 ENSG00000119979.18 protein_coding + + chr10:119104086-119137984:+ chr10:119132515:+ chr10:120863598-120897496:+ chr10:120892027:+ chr10:119225775 chr10:119123702 NA NA chr10:120985287 chr10:120883214 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 1 3 0 93 427 ENST00000392870.3 ENST00000361432.3 downstream upstream duplicates(1),mismatches(5) GCGGGCTGCTGGCTCCCCCGGCTCCGGCAGCAGCGGCGGCAGCCCGAGCAGCGGCAGCAGCAGCGGCAGCACCCCAGGCGCTGACAGCCCCGCCGGCCGGCTCCGTTGCTGACCGCCGACTGTCAATGGAGCTGGAAAACATCGTGGCCAACACGGTCTTGCTGAAAGCCAGGGAAG|AGGCCATGGCAATGGGCAAACTGCACAAAGAAATGGGTCAGCTAATTGTTCAGTCTGCAGAAGATCCAGAGAAATCAGAGAGCCACGTTATACAG___GATATTGCTCTAAAAACAAGAGAAATCTTTACCAACCTAGCACCaTTTTCAGAAGTTTCGGC MELENIVANTVLLKARE|eAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTNLAPFSEVS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE G protein-coupled receptor kinase 5 AGC GRK GRK P34947 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24605 PTPN13::MAPK10 ENSG00000163629.13::ENSG00000109339.24 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTPN13 ENSG00000163629.13 protein_coding + + chr4:86594315-86815171:+ chr4:86635371:+ chr4:87515468-87736324:+ chr4:87556524:+ MAPK10 ENSG00000109339.24 protein_coding - + chr4:85990007-86594625:- chr4:86544909:+ chr4:86911160-87515778:- chr4:87466062:+ chr4:86660077 chr4:86538723 NA NA chr4:87581230 chr4:87459876 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Kinase_non-catalytic_C-lobe_domain(27%)| KIND(0%)| 1 4 0 90 11 ENST00000436978.5 unknown downstream upstream mismatches(1) GGACCACTTCAGGAGGAAGAAATATGGGCTGTATTAAATCAAAGTGCTGAAAGTCTCCAAGAATTATTCAGAAAAG|GAAACAAAATCTTCAGACTTGCTTCCAAAGGAGAAGTTTGAAATGGAAGGGAGAAAGAGAGGAAGGGAGGGACGGCAAGAAGGAAAGAAGAGAGGAAGGAAGAAAGCAATGGCATGGCCATGTTTCTG GPLQEEEIWAVLNQSAESLQELFRK|gnkifrlaskgev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, non-receptor type 13 1 Yes lung, NSCLC, gastric, peritoneal carcinomatosis hepatocellular Familial Hepatocellular Carcinoma epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 24616 MGAT5::TMEM163 ENSG00000152127.9::ENSG00000152128.13 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MGAT5 ENSG00000152127.9 protein_coding + + chr2:134119983-134454621:+ chr2:134362408:+ chr2:134877554-135212192:+ chr2:135119979:+ TMEM163 ENSG00000152128.13 protein_coding - + chr2:134455759-134719000:- chr2:134695741:+ chr2:135213330-135476570:- chr2:135453311:+ chr2:134372990,chr2:134372991 chr2:134693347,chr2:134693333 NA NA chr2:135130561,chr2:135130562 chr2:135450917,chr2:135450903 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Domain_of_unknown_function_(DUF4525)(100%),Glycosyltransferase_family_18(52%)| DUF4525(100%),Glyco_transf_18(33%)| 2 0 2 288 3 ENST00000409645.5 unknown downstream upstream none CCTGGGTTCATTACCA___GTGCATGCTCCGAGTCCTTGATTCATTTGGTACTGAACCCGAATTTAATCATGCAAATTATGCCCAATCGAAAGGCCACAAGACCCCTTGGGGAAAATGGA...CTGGGGTTTGTGGTTGAGCAGCACCTGAACTCCAGTGATATCCACCACATTAATGAAATCAAAAGGCAGAACCAGTCCCTTGTGTATGGCAAAGTGGATAGCTTCTGGAAG|GTCAAATGGAGAGTCTCATATTATTGTTTAAAAGTTTTGGTTGGGCATGGTAGCTCATGCCTGTAATTGGG LGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWK|vkwrvsyyclkvlvghgsscl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3679 chr2:134127125-134127192:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24628 C5AR1::ZNF528 ENSG00000197405.8::ENSG00000167555.14 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA C5AR1 ENSG00000197405.8 protein_coding + + chr19:47290023-47322066:+ chr19:47316643:+ chr19:47793280-47825323:+ chr19:47819900:+ ZNF528 ENSG00000167555.14 protein_coding + + chr19:52397849-52418412:+ chr19:52417622:+ chr19:52901102-52921665:+ chr19:52920875:+ chr19:47316889,chr19:47316890,chr19:47316891,chr19:47316889 chr19:52417488,chr19:52417488,chr19:52417486,chr19:52417486 NA NA chr19:47820146,chr19:47820147,chr19:47820148,chr19:47820146 chr19:52920741,chr19:52920741,chr19:52920739,chr19:52920739 NA NA sense sense unknown intron 3'UTR deletion low none none none 0 0 2 18 20 ENST00000594787.1 ENST00000391788.6 downstream upstream duplicates(1),mismappers(2) CTGGAGTGCATTGGCATGATCTCAGCTTACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGTCTCTGGAGTAGCTGGGATTACAGGTGCGCGCCAACACTCTGGCTAATTTTTGTATTTTTAATGGCCTTTTGTGACTGGCTTCT...|...TTTTTTTTTTTTGGAGATAGAGTCTCACTCTGTTGCCCAGGCTGGAGTGTAGTGGTGTGTTCTTGGCTCACTGCACCCTCCGCCTCCTGGGCTCAAGCAGTCCTTCTGCCTTAGCCTCCTAAGTAGCTGAGACTACAGACGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24640 BCAR3::LINC01787 ENSG00000137936.18::ENSG00000231987.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4172 TRUE 1578 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93674614:- chr1:94027298-94312706:- chr1:94140170:- LINC01787 ENSG00000231987.1 lncRNA - - chr1:96254069-96374125:- chr1:96330300:- chr1:96719625-96839681:- chr1:96795856:- chr1:93670158,chr1:93670163 chr1:96339637,chr1:96339639 NA NA chr1:94135714,chr1:94135719 chr1:96805193,chr1:96805195 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none none none 8 15 47 325 42 ENST00000370244.5 ENST00000435311.1 upstream downstream duplicates(1),mismappers(4),mismatches(5) TGAATCACCAGTTCaCCCTGGCCTCATCCATGGACCTTCTGAGCAGCAGGTCCCCTCTCGCTGAGCATCGCCCAGATGCCTATCAAGATGTGTCTATACATGGCACCCTTCCACGGAAGAAAAAAGGTCCTCCTCCCATAAGGTCCTGTGATGACTTCAGTCACATGGGCACCCTCCCCCACTCCAAATCCCCACGGCAGAACTCGCCTGTGACCCAGGATGGCATCCAGGAGAGCCCATGGCAGGACCGGCACGGCGAAACCTTCACCTTCAG|GTTTGTCGACCCAGGATTCAATCCCAAATCTTCCAGACTTCAAAGTCCACATAGGACTCAGcGGGTCATGCTGCCTTCTCAGTGCACTGCAGCTTACACAAGTGAAAACGACACATGCAAGACTTGAGGAGAATGGACCACCTTCCAG___AAGGATGTATCCTCTATCCAGCAAGCCTTTTTCAATAAAATCATTATGTACTCCACCTGCAACAAG___GAAAGAAAAC?AAGT NHQFtLASSMDLLSSRSPLAEHRPDAYQDVSIHGTLPRKKKGPPPIRSCDDFSHMGTLPHSKSPRQNSPVTQDGIQESPWQDRHGETFTFr|fvdpgfnpkssrlqsphrtqrvmlpsqctaaytsendtckt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24641 BCAR3::LINC01787 ENSG00000137936.18::ENSG00000231987.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4172 TRUE 1578 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93674614:- chr1:94027298-94312706:- chr1:94140170:- LINC01787 ENSG00000231987.1 lncRNA - - chr1:96254069-96374125:- chr1:96304338:- chr1:96719625-96839681:- chr1:96769894:- chr1:93670158,chr1:93670163 chr1:96339637,chr1:96339639 NA NA chr1:94135714,chr1:94135719 chr1:96805193,chr1:96805195 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 24 22 22 325 78 ENST00000370244.5 ENST00000435311.1 upstream downstream duplicates(2),mismappers(1),mismatches(3) CAGAAACATGCCGGTGAATCACCAGTTCaCCCTGGCCTCATCCATGGACCTTCTGAGCAGCAGGTCCCCTCTCGCTGAGCATCGCCCAGATGCCTATCAAGATGTGTCTATACATGGCACCCTTCCACGGAAGAAAAAAGGTCCTCCTCCCATAAGGTCCTGTGATGACTTCAGTCACATGGGCACCCTCCCCCACTCCAAATCCCCACGGCAGAACTCGCCTGTGACCCAGGATGGCATCCAGGAGAGCCCATGGCAGGACCGGCACGGCGAAACCTTCACCTTCAG|AAGGATGTATCCTCTATCCAGCAAGCCTTTTTCAATAAAATCATTATGTACTCCACCTGCAACAAG___GAAAGAAAACAAAGTTCCGTGAATAACTAAATCATCATAATGAAGCAAAACGATAAGCAGAAAGCAAGAGTGTTTTGAAAG RNMPVNHQFtLASSMDLLSSRSPLAEHRPDAYQDVSIHGTLPRKKKGPPPIRSCDDFSHMGTLPHSKSPRQNSPVTQDGIQESPWQDRHGETFTFr|rmyplsskpfsikslctppatrkenkvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24642 BCAR3::LINC01787 ENSG00000137936.18::ENSG00000231987.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4172 TRUE 1578 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93681598:- chr1:94027298-94312706:- chr1:94147154:- LINC01787 ENSG00000231987.1 lncRNA - - chr1:96254069-96374125:- chr1:96304338:- chr1:96719625-96839681:- chr1:96769894:- chr1:93670158,chr1:93670163 chr1:96339637,chr1:96339639 NA NA chr1:94135714,chr1:94135719 chr1:96805193,chr1:96805195 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none none none 1 4 1 242 78 ENST00000260502.11 ENST00000435311.1 upstream downstream mismatches(1) CGCGCGCGGGATTCTCGGCGGGCACGCCCCGCGGACCATGAGCGTCCCCAGCTCCGGGAGCAGCCGCGGCGCGGGCGGTGCGAGGCCGGCCGCGCGGCGCCTTTGAGCCCCAGCCGGAGGTCCAGAGATCCTGAGAGCCCGAGCGCCCAGCGCCGCGCCGGGAG|AAGGATGTATCCTCTATCCAGCAAGCCTTTTTCAATAAAATCATTATGTACTCCACCTGCAACAAG___GAAAGAAAACAAAGTTCCGTGAATAACTAAATCATCATAATGAAGCAAAACGATAAGCAGAAAGCAAGAGTGTTTTGAAAG___...GAAGCAATCCAGTATCCATCGATAAATGGATGGATAAAGAAAATGTGGTACATACAT?CAACGGAATATTATTCAGCCTTAACAATGAAG...___GATTTAGAAGATTTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24643 BCAR3::LINC01787 ENSG00000137936.18::ENSG00000231987.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4172 TRUE 1578 BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93674614:- chr1:94027298-94312706:- chr1:94140170:- LINC01787 ENSG00000231987.1 lncRNA - - chr1:96254069-96374125:- chr1:96255750:- chr1:96719625-96839681:- chr1:96721306:- chr1:93670158,chr1:93670163 chr1:96339637,chr1:96339639 NA NA chr1:94135714,chr1:94135719 chr1:96805193,chr1:96805195 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 0 4 325 93 ENST00000370244.5 ENST00000435311.1 upstream downstream mismatches(3) GAAAATTTGCAAGCCTTCCCAGAAACATGCCGGTGAATCACCAGTTCaCCCTGGCCTCATCCATGGACCTTCTGAGCAGCAGGTCCCCTCTCGCTGAGCATCGCCCAGATGCCTATCAAGATGTGTCTATACATGGCACCCTTCCACGGAAGAAAAAAGGTCCTCCTCCCATAAGGTCCTGTGATGACTTCAGTCACATGGGCACCCTCCCCCACTCCAAATCCCCACGGCAGAACTCGCCTGTGACCCAGGATGGCATCCAGGAGAGCCCATGGCAGGACCGGCACGGCGAAACCTTCACCTTCAG|CATTGATCACAATAGCCAAGAAATGAAGCAATCCAGTATCCATCGATAAATGGATGGATAAAGAAAATGTGGTACATACATACAACGGAATATTATTCAGCCTTAACAATGAAGGACATCCGGACACATGCTACAACATGAATGGACTTTGAAGACATTATGTTAAAAGCAATAAGCAAATCACAATAGACAAATACTATATGACATATGATTCCACTTATATCAGGTACTTAGAG KFASLPRNMPVNHQFtLASSMDLLSSRSPLAEHRPDAYQDVSIHGTLPRKKKGPPPIRSCDDFSHMGTLPHSKSPRQNSPVTQDGIQESPWQDRHGETFTFs|idhnsqemkqssihr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24644 NOL4L::CDKN2A ENSG00000197183.15::ENSG00000147889.18 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NOL4L ENSG00000197183.15 protein_coding - - chr20:32443059-32585333:- chr20:32474601:- chr20:31030862-31173135:- chr20:31062404:- CDKN2A ENSG00000147889.18 protein_coding - + chr9:21967752-21995301:- chr9:21979061:+ chr9:21967751-21995300:- chr9:21979060:+ chr20:32457199,chr20:32457196 chr9:21974742,chr9:21974745 NA NA chr20:31045002,chr20:31044999 chr9:21974741,chr9:21974744 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 24 10 22 191 29 ENST00000359676.9 unknown upstream upstream duplicates(3),mismappers(2),mismatches(1) TGGGATTATTGATTACAACATGCCCCTCACCTCCACCTACCTGAAGCAGATGAAGCTTCGAGTGATGAATTCCCAGGAGCAG___...GGCGGCAGCAGCAGCAGCAGCAGCTGGAGCTGTGGGGCTGTCACCGCCGCCCGCCCCGCTCACTCGCGGATCCCGACCGCCCATCTCCGCCTCGCTTCCAGCCCAG___GATGAGACTTCTGTGAGCAGCGAGGATTTTGATATGAGCGACTCCACATGGATGTCAGCTGACCCGCACCTGGCCTCCAGCCTGAGCCCCAGCCAGGACGAGAGGATGCGGAGCCCGCAGAACCTCCACAGTCAAGAGGACG|TAGGCAAAGGCTTCCGGATGCTGAGAGCTGATCCCAGTCTTGAAGAATGATGTGAGAGTTTAAAGATGGAAAAGAAGGAGAAAGATATTCTAGGCAGAG___AAAATTTTCAAACATGGGGAAAGCTGCAATATAAGAAGAAAACAATGGAGAGACATCG MSDSTWMSADPHLASSLSPSQDERMRSPQNLHSQED|vgkgfrmlradpslee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24648 GSK3B::ENSG00000223727 ENSG00000082701.17::ENSG00000223727.6 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4173 TRUE 1579 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- ENSG00000223727 ENSG00000223727.6 lncRNA - - chr3:3250687-3627296:- chr3:3382630:- chr3:3292371-3668980:- chr3:3424314:- chr3:120072827,chr3:120072830 chr3:3382957,chr3:3382957 NA NA chr3:119791674,chr3:119791677 chr3:3424641,chr3:3424641 NA NA sense sense out-of-frame CDS/splice-site exon deletion high none none none 5 2 3 247 11 ENST00000264235.13 ENST00000420000.6 upstream downstream mismatches(2) AAAGGAGTGAAAAGCCAAGAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCAGGGCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|AGCTGAGAAGTGAGCTGTCTTCCAACTCACCTGCATAGGTGGAAGTCTTCCCAGATGCTGTGCTTGAATCTCTAATTTGATATATTTACAAGACTTGCAGAGGCTGTGAGCTGTGTGAATACATTGCACATAAGAACTACAGATGTTTTAAAGGTATGCAAGGTGGGATATAGTTGTCTCCAACCTAGTGATTTTCATATCCCAACAGGTCAAAGGAAAAGCACATTAAGA MSGRPRTTSFAESCKPVQQPSAFGSMKVS|klrselssnspa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 24649 GSK3B::ENSG00000223727 ENSG00000082701.17::ENSG00000223727.6 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4173 TRUE 1579 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- ENSG00000223727 ENSG00000223727.6 lncRNA - - chr3:3250687-3627296:- chr3:3382650:- chr3:3292371-3668980:- chr3:3424334:- chr3:120072827,chr3:120072830 chr3:3382957,chr3:3382957 NA NA chr3:119791674,chr3:119791677 chr3:3424641,chr3:3424641 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 3 0 4 247 6 ENST00000264235.13 ENST00000420000.6 upstream downstream mismatches(1) CTCCGCCACCGCCATGGCCGCTGGATCCAGCCGCCGCCTGCAGCTGCTCCTGGgGCAATGAGGAGAGGAGCCGCCGCCACCGCCACCGCCCGCCTCTGACT...AAAGGAGTGAAAAGCCAAGAGGACGAAGTCTTTTTCTTTTTCTTCTGTGGGAGAACTTAATGCTGCATTTATCGTTAACCTAACACCCCAACATAAAGACAAAAGGAAGAAAAGGAGGAAGGAAGGAAAAGGTGATTCGCGAAGAGAGTGATCATGTCAGGGCGGCCCAGAACCACCTCCTTTGCGGAGAGCTGCAAGCCGGTGCAGCAGCCTTCAGCTTTTGGCAGCATGAAAGTTAGCA|GTtTTTTCCTGGTTTTTCAGAGCTGAGAAGTGAGCTGTCTTCCAACTCACCTGCATAGGTGGAAGTCTTCCCAGATGCTGTGCTTGAATCTCTAATTTGATATATTTACAAGACTTGCAGAGGCTGTGAGCTGTGTGAATACATTGCACATAAGAACTACAGATGTTTTAAAGGTATGCAAGGTGGGATATAGTTGTCTCCAACCTAGTGATTTTCATATCCCAACAGGTCAAAGGAAAAGCACATTAAGA MSGRPRTTSFAESCKPVQQPSAFGSMKVS|sfflvfqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 24654 ENSG00000223727::MECOM ENSG00000223727.6::ENSG00000085276.19 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000223727 ENSG00000223727.6 lncRNA - - chr3:3250687-3627296:- chr3:3382478:- chr3:3292371-3668980:- chr3:3424162:- MECOM ENSG00000085276.19 protein_coding - + chr3:169083499-169663775:- chr3:169191891:+ chr3:168801287-169381563:- chr3:168909679:+ chr3:3379544,chr3:3379547 chr3:169189409,chr3:169189406 NA NA chr3:3421228,chr3:3421231 chr3:168907197,chr3:168907194 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 1 1 4 6 71 ENST00000420000.6 unknown upstream upstream mismappers(2) TTTTCCTGGTTTTTCAGAGCTGAGAAGTGAGCTGTCTTCCAACTCACCTGCATAGGTGGAAGTCTTCCCAGATGCTGTGCTTGAATCTCTAATTTGATATATTTACAAGACTTGCAGAGGCTGTGAGCTGTGTGAATACATTGCACATAAGAACTACAGATGTTTTAAAG|ATATATGTCAGATTGTGAAGAAAAAGTGGAAAAAAAGAAGCATGTGTATCGGAGATACTGAACAGAGAATAGAGTGGGTGGAGTAAGCCT___GACAATTCCAGAGCAGTTACAGAGGCTTGTTTGTGAGAAAGCAGAGGACTTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24657 GSK3B-DT::TF ENSG00000242622.4::ENSG00000091513.16 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GSK3B-DT ENSG00000242622.4 lncRNA + + chr3:120094895-120136783:+ chr3:120095778:+ chr3:119813742-119855630:+ chr3:119814625:+ TF ENSG00000091513.16 protein_coding + + chr3:133746040-133796641:+ chr3:133756831:+ chr3:133464884-133515485:+ chr3:133475675:+ chr3:120114444,chr3:120114443 chr3:133754813,chr3:133754809 NA NA chr3:119833291,chr3:119833290 chr3:133473657,chr3:133473653 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Transferrin(68%) |Transferrin(52%) 1 2 1 14 4 ENST00000469070.1 ENST00000402696.9 downstream upstream duplicates(1),mismatches(1) GCGCCTTTGGGCGGCCGCGCCCCGCCCAGCCGCGGGGGCCATTGATACAGAGGCTTGCTGCGCTTGGTGTGCGCGGCCCGGCCGGGCCTCTGGAAACGCCCATGAGAAATGAGCTCATGCTGGATGCGCGCGCTCCTTGGGCGCAACTGCCCAGCGCAAAACGGGCCCCGAAAGCAG|AGAACTTGGCAAACAAGGCTGACAGGGACCAGTATGAGCTGCTTTGCCTGGACAACACCCGGAAGCCGGTAGATGAATACAAGGACTGCCACTTGGCCCAGGTCCCTTCTCATACCGTCGTGGCCCGAAGTATGGGCGGCAAGGAGGACTTGATCTGGGAGCTTCTCAACCAGGCCCAG___GAACATTTTGGCAAAGACAAATCAAAAGAATTCCAACTA?TCAGCTCTCCT...ACGGGTTTTTAAAAGTCCCCCCCAGGATGGATGCCAAGATGTACCTGGGCTATGAGTATGTCACTGCCATCCGGAATCTACGGGAAGGCACAT___GCCCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24658 RBMS3::SACM1L ENSG00000144642.22::ENSG00000211456.14 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4176 FALSE NA RBMS3 ENSG00000144642.22 protein_coding + + chr3:28574791-30010391:+ chr3:29762989:+ chr3:28616282-30051882:+ chr3:29804480:+ SACM1L ENSG00000211456.14 protein_coding + + chr3:45689056-45745412:+ chr3:45735235:+ chr3:45730548-45786904:+ chr3:45776727:+ chr3:29853689,chr3:29853685 chr3:45734099,chr3:45734092 NA NA chr3:29895180,chr3:29895176 chr3:45775591,chr3:45775584 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)| RRM_1(100%)| 1 0 3 48 127 ENST00000636680.2 ENST00000438671.4 downstream upstream none TGAGAATATGCTGAAACCCTTTGGACATGTCATTTCCACAAGAATACTAAGAGACGCTAATGGAGTCAGCAGAGGTGTTGGCTTTGCCAG___AATGGAGTCTACTGAAAAATGTGAAGTGGTAATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGCATCCCAG|TTATTTTCTAGTGGACTCTGCTGGCCAGGTGGTGGCAAACCAG ENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIP|vif* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24661 FRMD4B::ENSG00000286353 ENSG00000114541.15::ENSG00000286353.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FRMD4B ENSG00000114541.15 protein_coding - - chr3:69168782-69542583:- chr3:69216263:- chr3:69217933-69591734:- chr3:69265414:- ENSG00000286353 ENSG00000286353.1 lncRNA - + chr3:54057690-54125377:- chr3:54073927:+ chr3:54091717-54159404:- chr3:54107954:+ chr3:69214046,chr3:69214053 chr3:54070345,chr3:54070338 NA NA chr3:69263197,chr3:69263204 chr3:54104372,chr3:54104365 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none FERM_C-terminal_PH-like_domain(28%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%)| FERM_C(0%),FERM_M(100%),FERM_N(100%)| 2 1 0 6 1 ENST00000398540.8 unknown upstream upstream none TGCAGTTGTCCAGAGAACAAACCTCTGGTCCTTTAGATCTGTTGCCACCTACTGTGGGAACTTTG___TGATGAAAATGCCAGGAAAGATTTAAAGACATTACCAGCCTTTCCAACCAAAA...TCCTTGGTGGCTTGGAATAAGCTATAAGGGAATTGGCCAATATGATATACAAGACAAGGTGAAGCCTCGGAAG|GACTAAAAGTCTCTTAGCGCAAACTCCGCCTCTTGAGTTTCCAGTCTATCAGCACCGGCCTG...TCACACCCGAGTCAAAAAAGTGCTGCGCCCTCCAGCGTCATGGGCCATAGTCCCAGGGGAAAATCCTACCAAACTAAAGCCAAGGGAAGTTTAACTCTCTG PWWLGISYKGIGQYDIQDKVKPRK|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24662 MITF::SUMF1 ENSG00000187098.18::ENSG00000144455.14 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MITF ENSG00000187098.18 protein_coding + + chr3:69739456-69968336:+ chr3:69879383:+ chr3:69788607-70017487:+ chr3:69928534:+ SUMF1 ENSG00000144455.14 protein_coding - + chr3:3700814-4467273:- chr3:4230480:+ chr3:3742498-4508957:- chr3:4272164:+ chr3:69883208,chr3:69883208 chr3:4145318,chr3:4145315 NA NA chr3:69932359,chr3:69932359 chr3:4187002,chr3:4186999 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none MITF/TFEB/TFEC/TFE3_N-terminus(44%)| MITF_TFEB_C_3_N(0%)| 0 2 1 12 3 ENST00000352241.9 unknown downstream upstream mismatches(1) CGAGCATCCTGGGGCCTCCAAGCCTCCGATAAGCTCCTCCAGTATGACATCACGCATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGG...AGTCAGACcCCAGCCATAAACGTCAGTGTGCCCACCACCCTTCCCTCTGCCACGCAGGTGCCGATGGAAGTCCTTAAG|c|ATACAACTCAGGAAAGCCAGACGGAAAAGGCACATGGGGCAAGAAAGGAGGAGACAGGTGTGTGGAGCTTCCGTGCCCTCTCCGGATACGCCACCTTCCCtGCACCTCAACATGTTCACCAAAtTGGAAGTTCTCCAGAG...TTCCAcAGAGAGACAAGCACCTGAAAATTTACCCTCCCAGCAATACTACATGAAACAGTGGAGAATGGTCCCTCAAAGGAAATCAGGGAATTATTCAAAAG SQTPAINVSVPTTLPSATQVPMEVLK|httqesqtekahgarkeetgvwsfralsgyatfpapqhvhqigssp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE melanogenesis-associated transcription factor 1 melanoma epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 24664 ERC2::WNT5A ENSG00000187672.15::ENSG00000114251.15 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:56434351:- chr3:55542339-56503123:- chr3:56468379:- WNT5A ENSG00000114251.15 protein_coding - - chr3:55465715-55490539:- chr3:55480918:- chr3:55499743-55524567:- chr3:55514946:- chr3:56297544,chr3:56297547,chr3:56297558 chr3:55487399,chr3:55487400,chr3:55487410 NA NA chr3:56331572,chr3:56331575,chr3:56331586 chr3:55521427,chr3:55521428,chr3:55521438 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none RIM-binding_protein_of_the_cytomatrix_active_zone(9%)|wnt_family(100%) Cast(0%)|wnt(100%) 0 1 1 8 73 ENST00000492584.3 ENST00000474267.5 upstream downstream none GAAGGAGAGAGTCTTGAGGAAAGAAGAGGCAGCGCGGATGTCTGTCCTCAAGGAGCAGATGAGGGTTTCCCATGAAGAAAATCAG|AAGTCCATTGGAATATTAAGCCCAGGAGTTGCTTTGGGGATGGCTGGAAGTGCAATGTCTTCCAAGTTCTTCCTAGTGGCTTTGGCCATATTTTTCTCCTTCGCCCAGGTTGTAATTGAAGCCAATTCTTGGTG___GTCGCTAG KERVLRKEEAARMSVLKEQMRVSHEENQ|KSIGILSPGVALGMAGSAMSSKFFLVALAIFFSFAQVVIEANSWWSL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24692 ZNF44::ZNF625 ENSG00000197857.16::ENSG00000257591.6 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4183 TRUE 1580 ZNF44 ENSG00000197857.16 protein_coding - - chr19:12224686-12294883:- chr19:12294692:- chr19:12335501-12405698:- chr19:12405507:- ZNF625 ENSG00000257591.6 protein_coding - - chr19:12142090-12156734:- chr19:12147802:- chr19:12252905-12267549:- chr19:12258617:- chr19:12278821,chr19:12278828 chr19:12154818,chr19:12154822 NA NA chr19:12389636,chr19:12389643 chr19:12265633,chr19:12265637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 0 4 5 18 20 ENST00000697576.1 ENST00000439556.3 upstream downstream mismappers(2) TGACGTTCCAGGAGCTAGTGGCCTCTTCACCCTGGTGACCTCTGTTCCGTATTCTGTCACTGAGAGACGCCCTGGGACATCTGTGGTGGCTTTTGTCGCGCTGGGACCTACCCTGgCTACGGGAGTTGGGAGGACCCGGGACACCGCACAGCCGGGAAATG|GATTCAGTGGTCTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGCAGGAAACCTTCAGGAACCTGGCTTCTGTAG___GAAAAAAATGGAAAGATCAGAAAATTGAAGATGAGTACAAAAATCCCAGGAGAAACC M|DSVVFEDVDVNFTQEEWALLDPSQKNLYRDVMQETFRNLASVGKKWKDQKIEDEYKNPRRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24693 ZNF44::ZNF625 ENSG00000197857.16::ENSG00000257591.6 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4183 TRUE 1580 ZNF44 ENSG00000197857.16 protein_coding - - chr19:12224686-12294883:- chr19:12293232:- chr19:12335501-12405698:- chr19:12404047:- ZNF625 ENSG00000257591.6 protein_coding - - chr19:12142090-12156734:- chr19:12147802:- chr19:12252905-12267549:- chr19:12258617:- chr19:12278821,chr19:12278828 chr19:12154818,chr19:12154822 NA NA chr19:12389636,chr19:12389643 chr19:12265633,chr19:12265637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 0 0 4 11 20 ENST00000600003.5 ENST00000439556.3 upstream downstream mismappers(5) CCGGGACACCGCACAGCCGGGAAATG___GCCCTGTGTTATGGAACTTTCTGGGGCTACCCTAAGATGCTGGAAGCTGCCAATCTCATGGAGGGCCTAGTGGATATCGGCCCTTGGGTCACTCTTCCCAGAGGACAGCCTGAGGTGTTGGAGTGGGGCCTCCCAAAGGATCAG|GATTCAGTGGTCTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGCAGGAAACCTTCAGGAACCTGGCTTCTG MALCYGTFWGYPKMLEAANLMEGLVDIGPWVTLPRGQPEVLEWGLPKDQ|DSVVFEDVDVNFTQEEWALLDPSQKNLYRDVMQETFRNLAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24694 ZNF44::ZNF625-ZNF20 ENSG00000197857.16::ENSG00000213297.8 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4184 TRUE 1581 ZNF44 ENSG00000197857.16 protein_coding - - chr19:12224686-12294883:- chr19:12294692:- chr19:12335501-12405698:- chr19:12405507:- ZNF625-ZNF20 ENSG00000213297.8 protein_coding - - chr19:12132117-12156731:- chr19:12147802:- chr19:12242932-12267546:- chr19:12258617:- chr19:12278821,chr19:12278828 chr19:12154818,chr19:12154822 NA NA chr19:12389636,chr19:12389643 chr19:12265633,chr19:12265637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none none |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 0 4 5 18 20 ENST00000697576.1 ENST00000430024.5 upstream downstream mismappers(2) TGACGTTCCAGGAGCTAGTGGCCTCTTCACCCTGGTGACCTCTGTTCCGTATTCTGTCACTGAGAGACGCCCTGGGACATCTGTGGTGGCTTTTGTCGCGCTGGGACCTACCCTGgCTACGGGAGTTGGGAGGACCCGGGACACCGCACAGCCGGGAAATG|GATTCAGTGGTCTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGCAGGAAACCTTCAGGAACCTGGCTTCTGTAG___GAAAAAAATGGAAAGATCAGAAAATTGAAGATGAGTACAAAAATCCCAGGAGAAACC M|DSVVFEDVDVNFTQEEWALLDPSQKNLYRDVMQETFRNLASVGKKWKDQKIEDEYKNPRRN NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24695 ZNF44::ZNF625-ZNF20 ENSG00000197857.16::ENSG00000213297.8 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4184 TRUE 1581 ZNF44 ENSG00000197857.16 protein_coding - - chr19:12224686-12294883:- chr19:12293232:- chr19:12335501-12405698:- chr19:12404047:- ZNF625-ZNF20 ENSG00000213297.8 protein_coding - - chr19:12132117-12156731:- chr19:12147802:- chr19:12242932-12267546:- chr19:12258617:- chr19:12278821,chr19:12278828 chr19:12154818,chr19:12154822 NA NA chr19:12389636,chr19:12389643 chr19:12265633,chr19:12265637 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none none |KRAB(100%),zf-C2H2(100%),zf-C2H2_4(100%),zf-C2H2_6(100%) 0 0 4 11 20 ENST00000600003.5 ENST00000430024.5 upstream downstream mismappers(5) CCGGGACACCGCACAGCCGGGAAATG___GCCCTGTGTTATGGAACTTTCTGGGGCTACCCTAAGATGCTGGAAGCTGCCAATCTCATGGAGGGCCTAGTGGATATCGGCCCTTGGGTCACTCTTCCCAGAGGACAGCCTGAGGTGTTGGAGTGGGGCCTCCCAAAGGATCAG|GATTCAGTGGTCTTTGAGGATGTAGATGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGATGTGATGCAGGAAACCTTCAGGAACCTGGCTTCTG MALCYGTFWGYPKMLEAANLMEGLVDIGPWVTLPRGQPEVLEWGLPKDQ|DSVVFEDVDVNFTQEEWALLDPSQKNLYRDVMQETFRNLAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24696 FRMD6-AS2::FRMD6 ENSG00000258537.6::ENSG00000139926.16 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA FRMD6-AS2 ENSG00000258537.6 lncRNA - + chr14:51379509-51651744:- chr14:51432493:+ chr14:51846227-52118462:- chr14:51899211:+ FRMD6 ENSG00000139926.16 protein_coding + + chr14:51489100-51730727:+ chr14:51689691:+ chr14:51955818-52197445:+ chr14:52156409:+ NA NA NA NA NA NA NA NA antisense sense unknown intron 5'UTR/splice-site deletion/read-through/3'-3' low none |FERM_C-terminal_PH-like_domain(100%),FERM_N-terminal_domain_(100%),FERM_central_domain(100%) |FERM_C(100%),FERM_M(100%),FERM_N(100%) 0 1 8 5 4439 unknown ENST00000356218.8 downstream upstream none CAAGGAGAAGGCCCAGTTTTCTGAATATTAAAACTTTAG___GTAGAGGAATTCACAaTGGTCTGGAACACAGAATCATCAGTCATAAGGTCAGTCCCCTGCTTTGACCTTTGCCAAATG|CTATGAAACCCACGTAGTCGAACACCGTGATGCTTCTCCTGCAGGGCGTGTGATGAGGAGGCGAGCTTGGCTTTGGAGTGCTGGGAACCTGAGGAATTGCCAAGGACCCAGAGCCCAGCCCTGACCACCAGAGTGCCCAAAACACAATGAACAAATTGAATTTTCATAACAACAGAGTCATGCAAGACCGCCGCAGTGTGTGCATTTTCCTTCCCAACGATGAATCTCTGAACATCATCATAAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24708 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120467308:+ chr11:120207122-120360646:+ chr11:120338017:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120298265:+ chr11:120107349-120190654:+ chr11:120168974:+ chr11:120468418 chr11:120292478 NA NA chr11:120339127 chr11:120163187 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none PDZ_domain(100%),Regulator_of_G_protein_signalling-like_domain(100%),RhoGEF_domain(87%)|Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) PDZ(100%),PDZ_6(100%),RGS-like(100%),RhoGEF(81%)|Homeodomain(100%),Pou(100%) 1 0 1 251 0 ENST00000397843.7 ENST00000260264.8 downstream upstream none TTTTGTGCAA___GATGCTGAAAGTAATCCACTGTGTCGTCGTCTTCAACTGAAGGATATTATTCCCACTCAAATGCAAAGGCTTACTAAGTACCCACTTCTGTTGGATAATATTGCCAAATACACAG|ATTAAAACCGAAGATCTCAGTGAC FVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24718 ARHGEF12::ENSG00000286992 ENSG00000196914.9::ENSG00000286992.3 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120337275:+ chr11:120207122-120360646:+ chr11:120207984:+ ENSG00000286992 ENSG00000286992.3 lncRNA + + chr11:119975745-120039822:+ chr11:120037233:+ chr11:119846454-119910531:+ chr11:119907942:+ chr11:120351558 chr11:120019052 NA NA chr11:120222267 chr11:119889761 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 105 88 61 961 351 ENST00000397843.7 ENST00000701821.1 downstream upstream duplicates(36),low_entropy(3),mismatches(47) CCGTTGACCCCTTACAGTCGGATGGTCTAGATGACTGAATGGAGTTTTGAGTTGGACTTTTGTGTCCCTGACGGAGTTGGGCCTGATCCCAGAGCACTGGGGGTGGGGAGGAGGTGTTACTGTAAAATGCAAGTTGGATAAAAGGAGGACCTCTCGCCAAGGGCCCCAATGAGTGGCACACAGTCTACTATCACCGACAG|ACCTGGGAGAAGCAGCAGCCCCGGGAGAGGCccAACTAGCAGAGCACTGAaGCCCACCGACAGCCATGTGCATGAGCTTGGAAGCACATCTCCCCAACCCACCCCAGTCAAGCCTGCAGATGAGACCTCAGCTGCAGCTGACAACTCGGCTACAACTTTGTGAGAGACCTGGAGCCAAAAG MSGTQSTITDr|pgrssspgrgptsralkptdshvhelgstspqptpvkpadetsaaadnsattl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24722 VOPP1::TYW1 ENSG00000154978.13::ENSG00000198874.14 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4187 TRUE 1582 VOPP1 ENSG00000154978.13 protein_coding - - chr7:55436056-55572988:- chr7:55492282:- chr7:55503749-55640681:- chr7:55559975:- TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67117483:+ chr7:66460160-66704501:+ chr7:66582470:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Radical_SAM_superfamily(39%),Wyosine_base_formation(100%) |Radical_SAM(56%),Wyosine_form(100%) 1 0 2 2654 609 ENST00000285279.10 ENST00000359626.10 upstream upstream mismatches(1) GTGGCTCCAGGTGCTGTGTGCGGGCCCTCTCCATACAGAGGCTGTGGTACTTCTG___GTTCCTTCTGATGATGGGCGTGCTTTTCTGCTGCGGAGCCGGCTTCTTCATCCGGtGGCGCATGTACCCCCCGCCGCTGATCGAGGAGCCAGCCTTCAATGTGTCCTACACCAGGCAGCCCCCAAATCCCGGCCCAG|GAACCTCGAGCCGGTTACTCAGCTGTATGTCAGTGTGGATGCCAGTACCAAAGACAGCCTGAAGAAAATCGACCGCCCACTCTTCAAGGATTTCTGGCAGAGATTCCTTGACAGTTTAAAAGCCTTGGCAGTCAAG___CAACAACGAACTGTCTACAGACTGACG GSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRwRMYPPPLIEEPAFNVSYTRQPPNPGP|gtssrllscmsvwmpvpkta* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24723 VOPP1::TYW1 ENSG00000154978.13::ENSG00000198874.14 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4187 TRUE 1582 VOPP1 ENSG00000154978.13 protein_coding - - chr7:55436056-55572988:- chr7:55492282:- chr7:55503749-55640681:- chr7:55559975:- TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67183126:+ chr7:66460160-66704501:+ chr7:66648113:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |Radical_SAM_superfamily(14%),Wyosine_base_formation(100%) |Radical_SAM(0%),Wyosine_form(100%) 1 0 0 2654 568 ENST00000285279.10 ENST00000359626.10 upstream upstream none TGATGATGGGCGTGCTTTTCTGCTGCGGAGCCGGCTTCTTCATCCGGAGGCGCATGTACCCCCCGCCGCTGATCGAGGAGCCAGCCTTCAATGTGTCCTAC...CAAATCCCGGCCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAACGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGG NPGP|attnclqtdaresmergrapglraarvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24724 GCNT2::OFCC1 ENSG00000111846.20::ENSG00000181355.21 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GCNT2 ENSG00000111846.20 protein_coding + + chr6:10492223-10629368:+ chr6:10529836:+ chr6:10492456-10629601:+ chr6:10530069:+ OFCC1 ENSG00000181355.21 transcribed_unitary_pseudogene - + chr6:9596110-10211608:- chr6:10141621:+ chr6:9596343-10211841:- chr6:10141854:+ chr6:10539094,chr6:10539095 chr6:10132414,chr6:10132412 NA NA chr6:10539327,chr6:10539328 chr6:10132647,chr6:10132645 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Core-2/I-Branching_enzyme(30%)| Branch(0%)| 48 71 72 351 528 ENST00000495262.7 unknown downstream upstream duplicates(22),mismappers(7),mismatches(39),multimappers(1) ACCACGCTGTTGGACGGACTAAATACGTCCACCAAGAACTGTTAAACCACAAAAATTCCTACGTGATTAAAACAACAAAATTAAAAACTCCTCCTCCTCATGACATGGTGATTTACTTTGGCACGGCCTACGTGGCTCTCACAAGGGACTTTGCTAACTTCGTCCTCCAAGACCAGCTCGCACTTGACTTACTCTCCTGGTCCAAGGACACCTACAGCCCCGACGAACATTTCTGGGTGACACTCAACAGGATTCCCG|GTGAATTTCTGCTCCAGCTGGCTGGGGACCATCATGACAAGGGAATGTGATCAAGAAGACAAACACATAGATATCATGAAGAAAAGAAAACGGAAG___ATACCAATATACTTTATTCTGAGCCAAGGCAAAGTCCATCTGACAACAGCAGATTGGACAATAACTGAAAATGTAGTCTGTAAGGAA HAVGRTKYVHQELLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVALTRDFANFVLQDQLALDLLSWSKDTYSPDEHFWVTLNRIP|gefllqlagdhhdkgm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24725 PALB2::DCTN5 ENSG00000083093.11::ENSG00000166847.10 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PALB2 ENSG00000083093.11 protein_coding - - chr16:23603160-23641321:- chr16:23637850:- chr16:23614481-23652642:- chr16:23649171:- DCTN5 ENSG00000166847.10 protein_coding + - chr16:23641466-23677472:+ chr16:23670868:- chr16:23652787-23688793:+ chr16:23682189:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site 3'UTR duplication/5'-5' high none none none 57 45 24 273 110 ENST00000261584.9 unknown upstream downstream duplicates(2),mismatches(5),multimappers(1) CCCGGCCCAGGGCCAACTGGGTCCCGGTGTCGGCAGGCCTGGGGTCGGCGACGGCTGCTCTTTTCGTTCTGTCGCCTGCCCGATGGACGAGCCTCCCGGGAAGCCCCTCAGCTGTGAGGAGAAGGAAAAG___TTAAAGGAGAAATTAGCATTCTTGAAAAGGGAATACAGCAAGACACTAGCCCGCCTTCAG___CGTGCCCAAAGAGCTGAAAAGATTAAGCATTCTATTAAGAAAACAGTAGAAGAACAAGATTGTTTGTCTCAGCAGGATCTCTCACCGCAGCTAAAACACTCAG|CATATGGTGAGGGGCCCACCTTCTTACCCCTAAATGGAAGCAAGCACATATTCTACTAAAAGCACAAGCCCATTGCTGGGGGGCTCTAGAAGTGTTTCAGTTATCATGTACTTATGGGAACTGTAGAAGTTGGCGAGACATTTTGCTGAGACCAGTTCTGAAAAAACCAGGCCTTCGGACACGCTGTCCCAACACTGCCAGTATCATTTCAGGGGACTTGCAGCTCCATGGAAGCTAACCCCCAGGAGACC MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHS|aygegptflplngskhify* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE partner and localizer of BRCA2 1 Wilms tumour, medulloblastoma, AML ,breast Fanconi anaemia N, breast cancer susceptibility leukaemia_lymphoma, other, epithelial TSG frameshift, nonsense, missense FALSE NA NA NA NA NA NA NA NA NA 24726 PALB2::ENSG00000260482 ENSG00000083093.11::ENSG00000260482.3 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PALB2 ENSG00000083093.11 protein_coding - - chr16:23603160-23641321:- chr16:23637850:- chr16:23614481-23652642:- chr16:23649171:- ENSG00000260482 ENSG00000260482.3 lncRNA + - chr16:23670011-23675499:+ chr16:23670868:- chr16:23681332-23686820:+ chr16:23682189:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none none none 57 45 23 273 110 ENST00000261584.9 unknown upstream downstream duplicates(2),mismatches(5),multimappers(1) CCCGGCCCAGGGCCAACTGGGTCCCGGTGTCGGCAGGCCTGGGGTCGGCGACGGCTGCTCTTTTCGTTCTGTCGCCTGCCCGATGGACGAGCCTCCCGGGAAGCCCCTCAGCTGTGAGGAGAAGGAAAAG___TTAAAGGAGAAATTAGCATTCTTGAAAAGGGAATACAGCAAGACACTAGCCCGCCTTCAG___CGTGCCCAAAGAGCTGAAAAGATTAAGCATTCTATTAAGAAAACAGTAGAAGAACAAGATTGTTTGTCTCAGCAGGATCTCTCACCGCAGCTAAAACACTCAG|CATATGGTGAGGGGCCCACCTTCTTACCCCTAAATGGAAGCAAGCACATATTCTACTAAAAGCACAAGCCCATTGCTGGGGGGCTCTAGAAGTGTTTCAGTTATCATGTACTTATGGGAACTGTAGAAGTTGGCGAGACATTTTGCTGAGACCAGTTCTGAAAAAACCAGGCCTTCGGACACGCTGTCCCAACACTGCCAGTATCATTTCAGGGGACTTGCAGCTCCATGGAAGCTAACCCCCAGGAGACC MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHS|aygegptflplngskhify* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE partner and localizer of BRCA2 1 Wilms tumour, medulloblastoma, AML ,breast Fanconi anaemia N, breast cancer susceptibility leukaemia_lymphoma, other, epithelial TSG frameshift, nonsense, missense FALSE NA NA NA NA NA NA NA NA NA 24727 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794735:+ chr8:128806772-129199347:+ chr8:128806981:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown intron exon/splice-site duplication high none none none 54 24 41 422 153 ENST00000651587.1 ENST00000646670.1 downstream upstream duplicates(4),mismappers(2),mismatches(9) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCAG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAACCATCA...___ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24728 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 7 5 56 422 18 ENST00000651587.1 ENST00000642795.1 downstream upstream duplicates(6),mismatches(6) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24729 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 2 1 53 422 12 ENST00000651587.1 ENST00000642795.1 downstream upstream duplicates(4),mismatches(6) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGAACTGAGGTCGCAAGACAACAAACTGGTCCTAAATAAAAAGTAAGAAAAATGtCGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCaTGAGCGACGCGGAAAATGGGTGATTTCTGCATTTCCATCGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24730 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339280:+ chr8:127568568-128431295:+ chr8:128351525:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 2 3 43 94 142 ENST00000657667.1 ENST00000644594.1 downstream upstream duplicates(1),mismatches(5) CTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATG...CTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GAGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24731 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796072:+ chr8:128806772-129199347:+ chr8:128808318:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown intron exon/splice-site duplication high none none none 2 2 42 44 153 ENST00000651587.1 ENST00000646670.1 downstream upstream duplicates(1),mismatches(5) CAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGGG|AGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAAC...___ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24732 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 58 24 18 ENST00000661830.1 ENST00000642795.1 downstream upstream duplicates(6),mismatches(6) CTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAG___GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTATCATACGAACGCAGCCTAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24733 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 56 94 18 ENST00000657667.1 ENST00000642795.1 downstream upstream duplicates(6),mismatches(6) CTTTCTAAAGCTCTGATCAGTCAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|ACACAGTCAGCCCAATGAAGGAGGAGGAGGAAAAGGAGGAGAAGAAGAAAAGAAAAAGAAAGAAAGAGAGAGGAAGAGGAAGATGATCAGAGTGGAAATGTGGCCAGGCGcGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAG___GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTATCATACGAACGCAGCCTAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24734 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 54 14 12 ENST00000656491.1 ENST00000642795.1 downstream upstream duplicates(4),mismatches(6) CACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|AGAACTGAGGTCGCAAGACAACAAACTGGcCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24735 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 53 422 13 ENST00000651587.1 ENST00000644021.1 downstream upstream duplicates(4),mismatches(6) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGTCTCACTTGGTTGCTCAGACTGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCCCACCACC-AAAAAAAAATAACCCAG...TTCAAGGAACTGATCTTCCAGTTGAAGAAACCTTTCATGCTTTTTAATTAGTGCAATCAGAAAGTCTAGATAATTTAGCTTCAATACATTCCCATTACCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24736 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127301359:+ chr8:127568568-128431295:+ chr8:128313604:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 53 422 8 ENST00000651587.1 ENST00000521586.2 downstream upstream duplicates(4),mismatches(5) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTAT...AGAGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24737 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127301359:+ chr8:127568568-128431295:+ chr8:128313604:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 53 94 8 ENST00000664995.1 ENST00000644021.1 downstream upstream duplicates(4),mismatches(6) CTTTCTAAAGCTCTGATCAGTCAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAA...ATTTGAGATGAGTTACATCTTGGAG|GGTCTGGAGTGGGACATTTTCAGCAGATCATTTTGTTATCATACGAACGCAGCCTAACCACCTGCTACTCCAAGTG...TGGAGTACAGTGGTACGATCTCGACTCACTGAAACCTCTGCTTCCTGGCTTCAAGCATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24738 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127311520:+ chr8:127568568-128431295:+ chr8:128323765:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 53 94 12 ENST00000664995.1 ENST00000642795.1 downstream upstream duplicates(4),mismatches(6) CTTTCTAAAGCTCTGATCAGTCAAGAAGGGGGTTGTATCAATCCTCAGAACCCTGAGTGGAACTTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAA...CCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|AGAACTGAGGTCGCAAGACAACAAACTGGTCCTAAATAAAAAGTAAGAAAAATGtCGGGGAGGAGCCAAGATGGCCAAATAGGAACAGCTCCGGTCTACAGCTCCCAGCaTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24739 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4188 TRUE 1583 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339280:+ chr8:127568568-128431295:+ chr8:128351525:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 45 24 142 ENST00000661830.1 ENST00000644594.1 downstream upstream duplicates(1),mismatches(5) CAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGA...CTTGGCTGTAAGGACCCCTAAGG|GAGGTGCTTATTTAGCAAATTCAACCTTAAACCTGAGTGCATGGAAACTATTGATGCAGTGTCCAAGGTGGAGAAAGGTCAGAGTGGATCCAGAGGAGCCAAGAGAAGACGTCCAGCATGGTGACCTGGGCTCAAGTCAAGGTCCTTATTTCTCTG___CTGAAC...___ATTTCTGTTCAGAAAACACATCTTCAGGAAAATCACCCCTGACTCACCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24743 PLEKHB2::ARHGEF4 ENSG00000115762.17::ENSG00000136002.21 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4190 TRUE 1584 PLEKHB2 ENSG00000115762.17 protein_coding + + chr2:131104847-131353709:+ chr2:131120978:+ chr2:131862420-132111282:+ chr2:131878551:+ ARHGEF4 ENSG00000136002.21 protein_coding + + chr2:130836914-131047263:+ chr2:131027945:+ chr2:131594487-131804836:+ chr2:131785518:+ chr2:131125202,chr2:131125198 chr2:130987884,chr2:130987877 NA NA chr2:131882775,chr2:131882771 chr2:131745457,chr2:131745450 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PH_domain(9%)|PH_domain(100%),RhoGEF_domain(100%),SH3_domain(100%) PH(0%)|PH(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%) 37 44 32 2071 116 ENST00000403716.5 ENST00000409359.7 downstream upstream duplicates(5),low_entropy(1),mismatches(15) TTGCAGGCGAGCAGGCGAGGAATCGCCGTGGCGTCTTGGTGTTCTCCACGCTGGTTCGCAG___GTGAAGAGATGGCGTTTGTGAAGAGTGGCTGGTTGCTGCGACAGA|CCATGCCTGATGGAGCTCTGGACACAGCTGTCTGCGCTGACGAAGTGGGGAGCGAGGAGGACCTGTATGATGACCTGCACAGCTCCAGCCACCACTACAGCCACCCTGGAGGGGGTGGGGAGCAGCTGGCTATCAATGAG___CTCATCAGCGATGGCAGTGTGGTCTGCGCTGAAGCACTCTGGGACCATGTCACCATGGACGACCAGGAGCTGGGCTTCAAAGC MAFVKSGWLLRQ|tMPDGALDTAVCADEVGSEEDLYDDLHSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24744 PLEKHB2::ARHGEF4 ENSG00000115762.17::ENSG00000136002.21 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4190 TRUE 1584 PLEKHB2 ENSG00000115762.17 protein_coding + + chr2:131104847-131353709:+ chr2:131120978:+ chr2:131862420-132111282:+ chr2:131878551:+ ARHGEF4 ENSG00000136002.21 protein_coding + + chr2:130836914-131047263:+ chr2:131038853:+ chr2:131594487-131804836:+ chr2:131796426:+ chr2:131125202,chr2:131125198 chr2:130987884,chr2:130987877 NA NA chr2:131882775,chr2:131882771 chr2:131745457,chr2:131745450 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PH_domain(9%)|PH_domain(100%),RhoGEF_domain(100%),SH3_domain(100%) PH(0%)|PH(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%) 2 1 7 2071 139 ENST00000403716.5 ENST00000409359.7 downstream upstream mismatches(4) GCAGGCGAGCAGGCGAGGAATCGCCGTGGCGTCTTGGTGTTCTCCACGCTGGTTCGCAG___GTGAAGAGATGGCGTTTGTGAAGAGTGGCTGGTTGCTGCGACAGA|CTCATCAGCGATGGCAGTGTGGTCTGCGCTGAAGCACTCTGGGACCATGTCACCATGGACGACCAGGAGCTGGGCTTCAAAGCTGGGGACGTCATCGAAGTGATGGATGCCACCAACAGAGAGTGGTGGTGGGGCCGGGTCGCCGATGGCGAGGGC?GGTTTCCAGCCAGCTTCGTTCGG___CTGAGGGTGAATCAGGACGAGCCCGCGGATGACGACGCCCCTCTGGCCGGGAACAGCGGAGCGGAGGACGG MAFVKSGWLLRQ|thqrwqcglr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24745 PLEKHB2::ARHGEF4 ENSG00000115762.17::ENSG00000136002.21 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4190 TRUE 1584 PLEKHB2 ENSG00000115762.17 protein_coding + + chr2:131104847-131353709:+ chr2:131105398:+ chr2:131862420-132111282:+ chr2:131862971:+ ARHGEF4 ENSG00000136002.21 protein_coding + + chr2:130836914-131047263:+ chr2:131027945:+ chr2:131594487-131804836:+ chr2:131785518:+ chr2:131125202,chr2:131125198 chr2:130987884,chr2:130987877 NA NA chr2:131882775,chr2:131882771 chr2:131745457,chr2:131745450 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |PH_domain(100%),RhoGEF_domain(100%),SH3_domain(100%) |PH(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%) 0 1 0 1490 116 ENST00000403716.5 ENST00000409359.7 downstream upstream none GCCGGACGTGCGGCAGTTGCAGGCGAGCAGGCGAGGAATCGCCGTGGCGTCTTGGTGTTCTCCACGCTGGTTCGCAG|CCATGCCTGATGGAGCTCTGGACA...CTCTGGGACCATGTCACCATGGACGACCAGGAGCTGGGCTTCAAAGCTGGGGACGTCATCGAAGTGATGGATGCCACCAACAGAGAGTGGTGGTGGGGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24746 PLEKHB2::ARHGEF4 ENSG00000115762.17::ENSG00000136002.21 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4190 TRUE 1584 PLEKHB2 ENSG00000115762.17 protein_coding + + chr2:131104847-131353709:+ chr2:131105398:+ chr2:131862420-132111282:+ chr2:131862971:+ ARHGEF4 ENSG00000136002.21 protein_coding + + chr2:130836914-131047263:+ chr2:131038853:+ chr2:131594487-131804836:+ chr2:131796426:+ chr2:131125202,chr2:131125198 chr2:130987884,chr2:130987877 NA NA chr2:131882775,chr2:131882771 chr2:131745457,chr2:131745450 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |PH_domain(100%),RhoGEF_domain(100%),SH3_domain(100%) |PH(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%) 0 1 0 1490 139 ENST00000403716.5 ENST00000409359.7 downstream upstream none CAGGACGCCGGACGTGCGGCAGTTGCAGGCGAGCAGGCGAGGAATCGCCGTGGCGTCTTGGTGTTCTCCACGCTGGTTCGCAG|CTCATCAGCGATGGCAG...TGGgGGgGGGGCCGGGTCGCCGATGGCGAGGGCTGGTTTCCAGCCAGCTTCGTTCGG___CCCCGGGAGTGGGAACCATGACTTACACCTGAAGAAGTTGAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24754 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4193 TRUE 1585 TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5397122:- chr7:5346421-5465045:- chr7:5436753:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense unknown intron 5'UTR/splice-site duplication high none none none 9 19 50 178 297 unknown ENST00000425013.6 upstream downstream duplicates(3),inconsistently_clipped(1),mismatches(7) TACCCACCCGCCTGCCACAGCAAGGCGGAAGCCCGGGGCTCAGCAGGGCTTGGAGGCCCTGCTGCCCCGGCTTGGGCCGCATGGATGAACTGACTGGCCACCGAGGCCCCGGGGCCCGAGGGCTTGGCGCTGGAGTCCG|c|TCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCATATATGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAG___AGTGGATCAATCTCCGAGATGGGCCCATCACCATATCTGACTCCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24755 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2286 TRUE 4193 TRUE 1585 TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5423441:- chr7:5346421-5465045:- chr7:5463072:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none none none 1 12 17 106 297 ENST00000430969.6 ENST00000425013.6 upstream downstream duplicates(5) CTGCGGGTGGCGGAGGGGAGCGGCGGCCGCGGGATGGCGGGCAGCAGGGGCGCCTAGCTGCGCCGGGAGCCGGGGCCGCCGCCGGAGTCGTTGTCGCCGGAGCCTGGAGCCGTGAACCCAGCCGCGCCAG|c|TCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCATATATGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAG___AGTGGATCAATCTCCGAGATGGGCCCATCACCATATCTGACTCCTCAGATGAGGAAAGGATTCCAATGCTGGTCACCCCAGCTCCTCAGCAGCATGAAGAAGAGGACCTGGATGATGATGTCATCCTGACAGAA___GATGATTCTGAGGATGACTACGGTGAATTTCTGGATCTTGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|TRUE|FALSE|FALSE,FALSE,FALSE|FALSE|TRUE|FALSE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24756 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4193 TRUE 1585 TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5421060:- chr7:5346421-5465045:- chr7:5460691:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none none none 1 5 19 100 297 ENST00000430969.6 ENST00000425013.6 upstream downstream duplicates(2) TCCGTGCACGGTCCCCCGCCGCCGCTGCTGTCCGGCCTGGCCATGGACAGCCACCGCGTGGGCGCGGCCACTGCCGGACGCTTGCCCGCCTCGGGCTTGCCCGGCCCGCTGCCGCCCGGGAAGTACATGGCCGGCCTGAATCTCCATCCGCACCCGG|c|TCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCATATATGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAG___AGTGGATCAATCTCCGAGATGGGCCCATCACCATATCTGACTCCTCAGATGAGGAAAGGATTCCAAT SVHGPPPPLLSGLAMDSHRVGAATAGRLPASGLPGPLPPGKYMAGLNLHPHP|a|llkqmvtmfry* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE,FALSE|FALSE|TRUE|FALSE,FALSE,TRUE|FALSE|FALSE|FALSE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24757 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4193 TRUE 1585 TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5407150:- chr7:5346421-5465045:- chr7:5446781:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication high none none none 0 2 21 16 297 ENST00000434361.5 ENST00000425013.6 upstream downstream duplicates(2) CTCATTGCAGCCTCAAACTCCTGGGCTCCTCCTGCCTTGGCATCTTGAGTAGCTgGGACTACAG___CATAGCTTGGAGGAGACTGCAGCCTCGGACTCTCACC...CAGAACGGCGGCGGgGGCCACAGGgCTGATAGCCCAGCCGCAGTGCCAAGGACGTGCAGG|c|TCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCATATATGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAG___AGTGGATCAATCTCCGAGATGGGCCCATCACCATATCTGACTCCTCAGATGAGGAAAGGATTCCAATGCTGGTCACCCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE,TRUE|FALSE|FALSE|FALSE,FALSE,FALSE|TRUE|FALSE|FALSE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24758 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4193 TRUE 1585 TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5425291:- chr7:5346421-5465045:- chr7:5464922:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none none none 0 1 0 10 297 ENST00000399434.2 ENST00000425013.6 upstream downstream none AAGGATTTCTGCCCCTCCAAGCTTCCTTTCCAGG|c|TCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCATATATGCATGTCTGCATTTGAAAATGGAAGAGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE,FALSE|FALSE|FALSE|TRUE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24759 PPP4R1::RAB31 ENSG00000154845.16::ENSG00000168461.13 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP4R1 ENSG00000154845.16 protein_coding - - chr18:9546791-9615240:- chr18:9614226:- chr18:9546789-9615238:- chr18:9614224:- RAB31 ENSG00000168461.13 protein_coding + - chr18:9708275-9862551:+ chr18:9763008:- chr18:9708272-9862548:+ chr18:9763005:- chr18:9602136,chr18:9602139 chr18:9793992,chr18:9793992 NA NA chr18:9602134,chr18:9602137 chr18:9793989,chr18:9793989 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 22 26 24 443 250 ENST00000400555.7 unknown upstream downstream duplicates(4),inconsistently_clipped(1),mismatches(4) CCGGCTCCCCGGCTCGCGCCGCTCCATGTAGCCCCGGCTCCCCGGGCGGCCGCGGAGGAGGGGGCGACCACAAGATGGCGG___ACCTCTCGCTGCTTCAGGAGGACCTGCAGGAGGACGCAGACGGAT|AGCTGGCCTATCTGGTGGATTCCCAAGTTCAGCAATCTTTCAGCCACTGAGCATTCTGGCCTCAATGGTGGCAGCTCCCCTACCCTGCTGGTGGCAAAGGAAACTCCTGTTGCTGAGTTCTAGGAAAGCCAGGGCCACTGACGTTATCAGGAGCAAAAAACCAAAGTGCCAGAGGCTCCATGTCTCCTCTAGCCCAGCTCTTAAGGAAGCCCGCACCACCACTCTCTCCTCCTCCCCTACTCTTCAGATCAGTTAAAGAAGGAAGACGACTTTTAAATGGGGAAGAAGAGCAAGTTCC MADLSLLQEDLQEDADG|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24760 RASSF3::TBK1 ENSG00000153179.14::ENSG00000183735.11 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RASSF3 ENSG00000153179.14 protein_coding + + chr12:64507001-64697564:+ chr12:64610743:+ chr12:64900781-65091344:+ chr12:65004523:+ TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64480012:+ chr12:64845870-64895894:+ chr12:64873792:+ chr12:64667060,chr12:64667056 chr12:64478177,chr12:64478170 NA NA chr12:65060840,chr12:65060836 chr12:64871957,chr12:64871950 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |TANK-binding_kinase_1_coiled-coil_domain_1(100%),TANK_binding_kinase_1_ubiquitin-like_domain(100%) |PK_Tyr_Ser-Thr(0%),TBK1_CCD1(100%),TBK1_ULD(100%) 16 36 4 354 325 ENST00000542104.6 ENST00000676809.1 downstream upstream duplicates(2),mismappers(1),mismatches(1) CGGGACCGGCAGCATGAGCAGCGGCTACAGCAGCCTGGAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAGGAGAGCGCCCCAGGGCAAGCCCCGCTCCGGCCAACAA|GTATAAAATAATTACAGGAAAGCCTTCTGGTGCAATATCTGGAGTACAGAAAGCAGAAAATGGACCAATTGACTGGAGTGGAGACATGCCTGTTTCTTGCAGTCTTTCTCG___GGGTCTTCAGGTTCTACTTACCCCTGTTCTTGCAAACATCCTTGAAGCAGATCAGGAAAAGTGTTGGGGTTTTGACCAGTTTTTTGCAGAAA MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQ|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 TRUE Large_intestine,Oesophagus,Skin no_match TRUE Rectum adenocarcinoma RECTUM no_match 65004523|65004523|65004523|65023024 TRUE|TRUE|TRUE|FALSE 64889263|64882267|64883821|64882267 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24762 MORC3::DOP1B ENSG00000159256.13::ENSG00000142197.13 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 2287 FALSE NA FALSE NA MORC3 ENSG00000159256.13 protein_coding + + chr21:36320189-36386148:+ chr21:36369876:+ chr21:37692487-37758446:+ chr21:37742174:+ DOP1B ENSG00000142197.13 protein_coding + + chr21:36156782-36294274:+ chr21:36288014:+ chr21:37529080-37666572:+ chr21:37660312:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none CW-type_Zinc_Finger(100%),Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Morc6_ribosomal_protein_S5_domain_2-like(100%)| HATPase_c_3(100%),Morc6_S5(100%),zf-CW(100%)| 15 11 8 226 239 ENST00000400485.6 ENST00000691173.1 downstream upstream duplicates(3) TATCAGCAAGCTTTGGAAGAAATAGAAAGGCTGAAAAAACAATGTAGTGCTTTGCAACATGTAAAGGCTGAATGCAGCCAGTGTTCCAATAATGAGAGTAAAAGTGAAATGGATGAGATGGCTGTGCAGCTTGACGATGTGTTTAGACAACTGGACAAATGCAGTATTGAGAGGGACCAGTATAAAAGTGAG|AACGCCTGACAGACAATCTCAGAGTTGGACAGACATCCATAGTTGCTGCTCAGATGTTTCTTTTTTTCAGAGTTTTGCTGCTAAGAATATCTCCTCAACATTTGACTTCATTGTGGCCAATAATGGTCTCTGAATTG___ATTCAGACATTCACACAGCTTGAAGAAGATCTAAAA YQQALEEIERLKKQCSALQHVKAECSQCSNNESKSEMDEMAVQLDDVFRQLDKCSIERDQYKSE|na* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24769 PCM1::ENSG00000253671 ENSG00000078674.20::ENSG00000253671.3 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCM1 ENSG00000078674.20 protein_coding + + chr8:17922842-18029948:+ chr8:18010668:+ chr8:17780351-17887457:+ chr8:17868177:+ ENSG00000253671 ENSG00000253671.3 lncRNA + + chr8:17808361-17822183:+ chr8:17820358:+ chr8:17665870-17679692:+ chr8:17677867:+ chr8:18010772,chr8:18010770 chr8:17813703,chr8:17813698 NA NA chr8:17868281,chr8:17868279 chr8:17671212,chr8:17671207 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Pericentriolar_material_1_C_terminus(58%)| PCM1_C(62%)| 5 5 13 292 39 ENST00000325083.13 ENST00000653384.1 downstream upstream none AGATCTTCTTGTAGAGATATCTGAAGTGTTGTTCAATGAATTGGCTTTCTTTAAGCTTATGCAAGATTTGGATAATAATAGTATAACTGTTAAACAGAGATGCAAAAGGAAAATAGAAGCAACTGGAGTGATACAATCTTGTGCCAAAGAG___GCTAAAAGGATTCTTGAAGATCATGGCTCACCTGCTGGAGAGATTGATGATGAAGACAAA|TaTGAAAAAAAAGGAAAAAACTGAAAATCTCAAGAGGATTCCAGGAAATCAAAACAATGAATTATTGAATCAAGAATTTGAAAGAGAAAATAGATGCATACTGAAAAAAGAATTTTGTTTAGTGAGATAGATGTAATAATGAAGGCATGTTGATAACGGGGGAGCTATGTATATATGAGGGGAGGGATATATTGGAAATCTCTGTATCTTCCTCTCAATCTTGCTGTGATCCTAAAAC DLLVEISEVLFNELAFFKLMQDLDNNSITVKQRCKRKIEATGVIQSCAKEAKRILEDHGSPAGEIDDEDK|yekkgkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE pericentriolar material 1 (PTC4) 1 papillary thyroid, CML, MPN epithelial, leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24775 PCM1::MTUS1-DT ENSG00000078674.20::ENSG00000253944.1 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCM1 ENSG00000078674.20 protein_coding + + chr8:17922842-18029948:+ chr8:18010668:+ chr8:17780351-17887457:+ chr8:17868177:+ MTUS1-DT ENSG00000253944.1 lncRNA + + chr8:17801345-17861069:+ chr8:17815041:+ chr8:17658854-17718578:+ chr8:17672550:+ chr8:18010772,chr8:18010770 chr8:17813703,chr8:17813698 NA NA chr8:17868281,chr8:17868279 chr8:17671212,chr8:17671207 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Pericentriolar_material_1_C_terminus(58%)| PCM1_C(62%)| 6 2 6 292 27 ENST00000325083.13 unknown downstream upstream none GCAAGATTTGGATAATAATAGTATAACTGTTAAACAGAGATGCAAAAGGAAAATAGAAGCAACTGGAGTGATACAATCTTGTGCCAAAGAG___GCTAAAAGGATTCTTGAAGATCATGGCTCACCTGCTGGAGAGATTGATGATGAAGACAAA|AGACAGGTATTGCTATGTTGCCCAGGCTGCTGCTGGCCTCAAAGCCCTGGACTCATGTGATCCTCCCACCTTGGCCTTCTGAGTAGCTGGGACTAtAGTCATGTGCCATGGTGCCCAGCA QDLDNNSITVKQRCKRKIEATGVIQSCAKEAKRILEDHGSPAGEIDDEDK|rqvllccpgccwpqspglm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE pericentriolar material 1 (PTC4) 1 papillary thyroid, CML, MPN epithelial, leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24777 FIGN::MAP3K20 ENSG00000182263.14::ENSG00000091436.17 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4197 TRUE 1586 FIGN ENSG00000182263.14 protein_coding - - chr2:163593396-163736012:- chr2:163734903:- chr2:164449906-164592522:- chr2:164591413:- MAP3K20 ENSG00000091436.17 protein_coding + + chr2:173075435-173268015:+ chr2:173090998:+ chr2:173940163-174132743:+ chr2:173955726:+ chr2:163679108,chr2:163679111 chr2:173078576,chr2:173078573 NA NA chr2:164535618,chr2:164535621 chr2:173943304,chr2:173943301 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none |Protein_kinase_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),SAM_1(100%),SAM_2(100%) 5 1 5 34 236 ENST00000409634.5 ENST00000375213.8 upstream upstream mismatches(1) CTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG___GgTAAATGAATACCTGACGAAAGGGCCCACGTTTCAAGGCAGTGACATTTGATAGCTGAGAGGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG|ATTTTGTGGAAGTATAATACTTTGTCATTATGAGATGTCGTCTCTCGGTGCCTCCTTTGTGCAAATTAAATTTGATGACTTGCAGTTTTTTGAAAACTGCGGTGGAGGAAGTTTTGGGAGTGTTTATCGAGCCAAATGGATATCACAGGACAAGGAGGTGGCTGTAAAGAAGCTCCTCAAAATAGAGAAAGAG___GCAGAAAT MISSTSVY|dfvev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase MLT TKL MLK ZAK Q9NYL2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24778 FIGN::MAP3K20 ENSG00000182263.14::ENSG00000091436.17 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4197 TRUE 1586 FIGN ENSG00000182263.14 protein_coding - - chr2:163593396-163736012:- chr2:163735838:- chr2:164449906-164592522:- chr2:164592348:- MAP3K20 ENSG00000091436.17 protein_coding + + chr2:173075435-173268015:+ chr2:173090998:+ chr2:173940163-174132743:+ chr2:173955726:+ chr2:163679108,chr2:163679111 chr2:173078576,chr2:173078573 NA NA chr2:164535618,chr2:164535621 chr2:173943304,chr2:173943301 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |Protein_kinase_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) |PK_Tyr_Ser-Thr(100%),Pkinase(100%),SAM_1(100%),SAM_2(100%) 3 2 2 68 236 ENST00000409634.5 ENST00000375213.8 upstream upstream duplicates(1) TGAAATTCCAACATGGCAGAGGCTGCAGTCCGTCTTCCCTTCAAAAACTTGGAATGATTTCAAATCATAGGCACCTTCACTTAACCCTAGCTTCCATTCATCAGCAAACACATCGGATCGATGCTACGCTAACCTATCGGGTTCTCTCTCCGCGCGTTCAG|ATTTTGTGGAAGTATAATACTTTGTCATTATGAGATGTCGTCTCTCGGTGCCTCCTTTGTGCAAATTAAATTTGATGACTTGCA...GGTGGAGGAAGTTTTGGGAGTGTTTATCGAGCCAAATGGATATCACAGGACAAGGAGGTGGCTGTAAAGAAGCTCCTCAAAATAGAGAAAGAG___GCAGAAATACTCAGTGTCCTCAGTCACAGAAACATCATCCAGTTTTATGGAGTAATTCTTGAACCTCCCAACTATGGCATTGTCACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase MLT TKL MLK ZAK Q9NYL2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24779 FIGN::MAP3K20 ENSG00000182263.14::ENSG00000091436.17 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4197 TRUE 1586 FIGN ENSG00000182263.14 protein_coding - - chr2:163593396-163736012:- chr2:163734903:- chr2:164449906-164592522:- chr2:164591413:- MAP3K20 ENSG00000091436.17 protein_coding + + chr2:173075435-173268015:+ chr2:173169805:+ chr2:173940163-174132743:+ chr2:174034533:+ chr2:163679108,chr2:163679111 chr2:173078576,chr2:173078573 NA NA chr2:164535618,chr2:164535621 chr2:173943304,chr2:173943301 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none |Protein_kinase_domain(84%),SAM_domain_(Sterile_alpha_motif)(100%) |PK_Tyr_Ser-Thr(33%),Pkinase(33%),SAM_1(100%),SAM_2(100%) 0 1 2 34 521 ENST00000409634.5 ENST00000375213.8 upstream upstream none GGAAAAGTGGCTTTAATGAAAAGCAACCTTTGGAATTCCTGCTTGTGAGAAATCCAATTCAGCTTTTTGTGCTGCCAGCAAGAAATGATCAGTAGCACCAGTGTTTATG|GCAGAAATACTCAGTGTCCTCAGTCACAGAAACATCATCCAGTTTTATGGAGTAATTCTTGAACCTCCCAACTATGGCATTGTCACAG___AATATGCTTCcCTGGG MISSTSVY|grntqcpqsqkhhpvlwsns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase MLT TKL MLK ZAK Q9NYL2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24781 PVT1::CASC19 ENSG00000249859.14::ENSG00000254166.4 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC19 ENSG00000254166.4 lncRNA - + chr8:127072694-127227541:- chr8:127169545:+ chr8:128084939-128239786:- chr8:128181790:+ chr8:127877247,chr8:127877247 chr8:127090612,chr8:127090609 NA NA chr8:128889493,chr8:128889493 chr8:128102857,chr8:128102854 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 6 0 3 422 7 ENST00000651587.1 unknown downstream upstream mismatches(1) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATATTTACTTGTTTTTACGATGGAGTGGGGACCTTCAAGCTGCTTCTACGTCAAACTAGAAACAAGAAATCCCTGGCATTTTTAATCATGATAACCATCCTATGAAGTAGATGTTATCATAATTTCTACCAGTTTACAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24785 CTCF::KCTD19 ENSG00000102974.16::ENSG00000168676.11 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67562724:+ chr16:67596370-67673080:+ chr16:67596627:+ KCTD19 ENSG00000168676.11 protein_coding - + chr16:67289428-67326760:- chr16:67325069:+ chr16:67323331-67360663:- chr16:67358972:+ chr16:67569978,chr16:67569976,chr16:67569977 chr16:67316984,chr16:67316983,chr16:67316980 NA NA chr16:67603881,chr16:67603879,chr16:67603880 chr16:67350887,chr16:67350886,chr16:67350883 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 6 2 0 345 208 ENST00000646076.1 unknown downstream upstream duplicates(1),mismatches(1) CCGGTGCGGACGCGCGGAGCTCGCCGGAGACGCCGGGTGGCCGGAGCCGTGGAGCGGCGGCGGAGCGGGCGCCGCGGGGGGTGTGGCGCGGAG|GTGGCTGAGAGCTCAATGGGGGTGCTCAGAGTGTGCAGATGTTGGATGCCAAAGAAAACCTACTTCTCGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 24786 NOTCH1::GABBR2 ENSG00000148400.13::ENSG00000136928.7 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4198 TRUE 1587 NOTCH1 ENSG00000148400.13 protein_coding - - chr9:136494433-136546048:- chr9:136501748:- chr9:139388885-139440500:- chr9:139396200:- GABBR2 ENSG00000136928.7 protein_coding - - chr9:98288109-98708935:- chr9:98311205:- chr9:101050391-101471217:- chr9:101073487:- chr9:136501521,chr9:136501523 chr9:98359042,chr9:98359041 NA NA chr9:139395973,chr9:139395975 chr9:101121324,chr9:101121323 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)|7_transmembrane_sweet-taste_receptor_of_3_GCPR(45%),Gamma-aminobutyric_acid_type_B_receptor_subunit_2_coiled-coil_domain(100%) Ank(0%),EGF(100%),EGF_CA(100%),NOD(100%),NODP(100%),Notch(100%),hEGF(100%)|7tm_3(6%),GBR2_CC(100%) 2 3 2 98 65 ENST00000651671.1 ENST00000259455.4 upstream downstream mismatches(4) GTGGGCCTCAA___GCCCCTGAAGAACGCTTCAGACGGTGCCCTCATGGACGACAACCAGAATGAGTGGGGGGACGAGGACCTGGAGACCAAGAAGTTCCGG___TTCGAGGAGCCCGTGGTTCTGCCTGACCTGGACGACCAGACAGACCACCGGCAGTGGACTCAGCAGCACCTGGATGCCGCTGACCTGCGCATGTCTGCCATGGCCCCCACACCGCCCCAGGGTGAGGTTGACGCCGACTGCATGGACGTCAATGTCCGCGGGCCTG|CCGGACCCAGCAGGACGGGATATCTCCATCCGCCCTCTCCTGGAGCACTGTGAGAACACCCATATGACCATCTGGCTTGGCATCGTCTATGCCTACAAGGGACTTCTCATG___TTGTTCGGTTGTTTCTT?GCTTGGGAGACCCGC??CGTC?GCATCCCCGCACTCAACGACA VGLKPLKNASDGALMDDNQNEWGDEDLETKKFRFEEPVVLPDLDDQTDHRQWTQQHLDAADLRMSAMAPTPPQGEVDADCMDVNVRGP|agpsrtgylhppspgal* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4673 chr9:136519568-136519626:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Notch homolog 1, translocation-associated (Drosophila) (TAN1) 1 Yes T-ALL, breast, bladder, skin SCC, lung SCC, head and neck SCC leukaemia_lymphoma, epithelial oncogene, TSG, fusion translocation, missense, other FALSE NA NA NA NA NA NA NA NA NA 24787 NOTCH1::GABBR2 ENSG00000148400.13::ENSG00000136928.7 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4198 TRUE 1587 NOTCH1 ENSG00000148400.13 protein_coding - - chr9:136494433-136546048:- chr9:136501748:- chr9:139388885-139440500:- chr9:139396200:- GABBR2 ENSG00000136928.7 protein_coding - + chr9:98288109-98708935:- chr9:98362748:+ chr9:101050391-101471217:- chr9:101125030:+ chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521,chr9:136501521 chr9:98359005,chr9:98359003,chr9:98358989,chr9:98358984,chr9:98358997,chr9:98359029,chr9:98359028,chr9:98359022,chr9:98359020,chr9:98359010 NA NA chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973,chr9:139395973 chr9:101121287,chr9:101121285,chr9:101121271,chr9:101121266,chr9:101121279,chr9:101121311,chr9:101121310,chr9:101121304,chr9:101121302,chr9:101121292 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/5'-5' high none Calcium-binding_EGF_domain(100%),EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),LNR_domain(100%),NOTCH_protein(100%)| Ank(0%),EGF(100%),EGF_CA(100%),NOD(100%),NODP(100%),Notch(100%),hEGF(100%)| 1 3 3 98 63 ENST00000651671.1 unknown upstream upstream none CGTGGTTCTGCCTGACCTGGACGACCAGACAGACCACCGGCAGTGGACTCAGCAGCACCTGGATGCCGCTGACCTGCGCATGTCTGCCATGGCCCCCACACCGCCCCAGGGTGAGGTTGACGCCGACTGCATGGACGTCAATGTCCGCGGGCCTG|GGGGTCCACAGCCTGCCAGCAGATCAGGATACACAGGTCGATCAGCAGCATGCCCCCCACGATCACAAGCAGTTTCTGGTCCTTGATGATCTACAGAGCGGGAAGGAGCAGAGGGGAGCCGATGTGAGAGACAGCTTCCCACGCAGCAACTGGGGGCCCAGGTCATAGGGGGAACCTGCATCATGAACCCCCCAGCCGGAGAGTCTCCTGCGATTCCCCATCACCCACAGGATAAATCCAGCCAAGC...TCCTCCATGAAGTCCTCTCTAACTCCTGCAGCACAACTAATTACTCCATAGCGCTTTGTCCACATACTTAATTATCAGGAGGAACCACAGTAGTAACAACA VVLPDLDDQTDHRQWTQQHLDAADLRMSAMAPTPPQGEVDADCMDVNVRGP|ggpqpasrsgytgrsaacpprsqavsgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4673 chr9:136519568-136519626:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Notch homolog 1, translocation-associated (Drosophila) (TAN1) 1 Yes T-ALL, breast, bladder, skin SCC, lung SCC, head and neck SCC leukaemia_lymphoma, epithelial oncogene, TSG, fusion translocation, missense, other FALSE NA NA NA NA NA NA NA NA NA 24789 FHDC1::GOPC ENSG00000137460.10::ENSG00000047932.14 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4199 TRUE 1588 FHDC1 ENSG00000137460.10 protein_coding + + chr4:152936323-152979671:+ chr4:152937885:+ chr4:153857475-153900823:+ chr4:153859037:+ GOPC ENSG00000047932.14 protein_coding - - chr6:117560269-117602542:- chr6:117579064:- chr6:117881432-117923705:- chr6:117900227:- chr4:152939166,chr4:152939163 chr6:117587327,chr6:117587330 NA NA chr4:153860318,chr4:153860315 chr6:117908490,chr6:117908493 NA NA sense sense unknown intron CDS/splice-site translocation high none |PDZ_domain(100%) |PDZ(100%),PDZ_6(100%) 4 2 1 18 505 unknown ENST00000052569.10 downstream downstream none CGCCCTTCTGCCCGGCGCTGATAAGGACGCAGCTGGGGCTCCGCGCGGCCCGTGGGCCGCCCACTCGCGTTCAGTTTGCTGACCCCAGCGCGGCTCCCCGGGGATTCGCGGCCCAGCCGGTGGCGGCTGAGCCGGTGGCTTGTTG|GCACAGTTGGTGGATCTGAAATCTGAACTGACAGAAACCCAAGCAGAGAAAGTTGTTTTGGAGAAAGAAGTACATGATCAGCTTTTACAGCTGCACTCTATTCAGCTGCAGCTTCATGCTAAAACTGGTCAAAGTGCTGACTCTGGTACCATTAAGGCAAAATTG___GAAAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE golgi associated PDZ and coiled-coil motif containing 1 glioblastoma, cholangiocarcinoma, borderline ovarian epithelial, other fusion translocation 24790 FHDC1::GOPC ENSG00000137460.10::ENSG00000047932.14 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2290 TRUE 4199 TRUE 1588 FHDC1 ENSG00000137460.10 protein_coding + + chr4:152936323-152979671:+ chr4:152936409:+ chr4:153857475-153900823:+ chr4:153857561:+ GOPC ENSG00000047932.14 protein_coding - - chr6:117560269-117602542:- chr6:117579064:- chr6:117881432-117923705:- chr6:117900227:- chr4:152939166,chr4:152939163 chr6:117587327,chr6:117587330 NA NA chr4:153860318,chr4:153860315 chr6:117908490,chr6:117908493 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |PDZ_domain(100%) |PDZ(100%),PDZ_6(100%) 0 15 0 40 505 ENST00000511601.6 ENST00000052569.10 downstream downstream duplicates(2) AGGCTGCAGCGGTCTGCGCGCCGGGAGCGGGGGCGCGCTGGCCGCGG|GCACAGTTGGTGGATCTGAAATCTGAACTGACAGAAACCCAAGCAGAGAAAGTTGTTTTGGAGAAAGAAGTACATGATCAGCTTTTACAGCTGCACTCTATTCAGCTGCAGCTTCATGCTAAAACTGGTCAAAGTGCTGACTCTGGTACCATTAAGGCAAAATTG___GAAAGAGAGCTTGAGGCAAACAAAAAAGAAAAAATGAAAGAAGCACAACTTGAAGCTGAAGTGAAATTGTTGAGAAAAGAGAATGAAG...G unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE golgi associated PDZ and coiled-coil motif containing 1 glioblastoma, cholangiocarcinoma, borderline ovarian epithelial, other fusion translocation 24809 LRRC28::IL27 ENSG00000168904.15::ENSG00000197272.2 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4200 TRUE 1589 LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99276616:+ chr15:99791567-99930934:+ chr15:99816821:+ IL27 ENSG00000197272.2 protein_coding - - chr16:28499362-28512051:- chr16:28504050:- chr16:28510683-28523372:- chr16:28515371:- chr15:99281794,chr15:99281795 chr16:28511159,chr16:28511158 NA NA chr15:99821999,chr15:99822000 chr16:28522480,chr16:28522479 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Leucine_rich_repeat(24%)| LRR_8(19%)| 1 1 3 60 34 ENST00000301981.8 ENST00000356897.1 downstream downstream none GCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAG___AAATGGACCAATTTTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGG...TCTGCACCATTTTCCATTGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTG___CCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT|GGCTCAGCCTGTTGCTGCTTCCCTTGCTCCTGGTTCAAGCTGGTGTCTGGGGATTCCCAAGGCCCCCAGGGAGGCCCCAGCTGAGCCTGCAGGAGCTGCGGAGGGAGTTCACAGTCAGCCTGCATCTCGCCAGGAAGCTGCTCTCCGAGGTTCGGGGCCAGGCCCACCGCTTT___GCGGAATCTCACCTGCC LHHFPLELLKDEGLQYLERLYMKRNSLTSLPENLAQKLPNLVEl|aqpvaaslapgsswclgipkapreapaepagaaegvhsqpasrqeaalrgsgpgpplcgisp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24810 LRRC28::IL27 ENSG00000168904.15::ENSG00000197272.2 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4200 TRUE 1589 LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99276616:+ chr15:99791567-99930934:+ chr15:99816821:+ IL27 ENSG00000197272.2 protein_coding - - chr16:28499362-28512051:- chr16:28502134:- chr16:28510683-28523372:- chr16:28513455:- chr15:99281794,chr15:99281795 chr16:28511159,chr16:28511158 NA NA chr15:99821999,chr15:99822000 chr16:28522480,chr16:28522479 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Leucine_rich_repeat(24%)| LRR_8(19%)| 0 1 0 60 19 ENST00000301981.8 ENST00000356897.1 downstream downstream none TCCAAACCTTGTGGAACT|GACCCGGAGCGTCTCTGCTTCATCTCCACCACGCTTCAGCCCTTCCATGCCCTGCTGGGAGGGCTGGGGACCCAGGGCCGCTG...CGTCTTATCTCGGGCCGTGCGGGAGTTGCTGCTGCTGTCCAAGGCTGGGCACTCAGTCTGGCCCTTGGGGTTCCCAACATTGAGCCCCCAGCCCTGATCGG PNLVEl|trsvsasspprfspsmpcwegwgpraa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24814 SMIM12::ZMYM6 ENSG00000163866.9::ENSG00000163867.17 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMIM12 ENSG00000163866.9 protein_coding - - chr1:34712737-34859755:- chr1:34798371:- chr1:35178338-35325356:- chr1:35263972:- ZMYM6 ENSG00000163867.17 protein_coding - - chr1:34986165-35031945:- chr1:35004005:- chr1:35451766-35497546:- chr1:35469606:- chr1:34785396,chr1:34785399 chr1:35004303,chr1:35004303 NA NA chr1:35250997,chr1:35251000 chr1:35469904,chr1:35469904 NA NA sense sense stop-codon intron CDS/splice-site duplication high none UPF0767_family(100%)|Domain_of_unknown_function_(DUF4371)(100%) UPF0767(41%)|DUF4371(100%) 1 1 2 15 64 ENST00000426886.1 ENST00000357182.9 upstream downstream mismappers(1),mismatches(1) CGGAGAGCGGGGGCCGCACTGGGGAGTGTGGGCTGGaCCGCAG___ATGTCATGTGGCCTGTGTTTTGGACCGTGGTTCGTACCTATGCTCCTTATGTCACATT...ATCTCAGAGCGCCGGGAGGATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAG___TGACATCACCAAGGAGATGCCTGCGTCCAACAAACCTAGCATTCTCCAGAGCCCCGTGCCTGACCAGTGCTTGGAG|GTGCAGTTACTAAAGAGGCAGCAAAGATCATTCAAGAT___GAAAGTACACAGGAAGATGCTATGAAATTTCCATCTTCCCAATCTTCCCAGCCTTCCAGGCTTTTAAAGAACAAAGGCATATCATGCAAACCCGTCACACAGACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24816 SMIM12::ENSG00000271741 ENSG00000163866.9::ENSG00000271741.1 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMIM12 ENSG00000163866.9 protein_coding - - chr1:34712737-34859755:- chr1:34798371:- chr1:35178338-35325356:- chr1:35263972:- ENSG00000271741 ENSG00000271741.1 protein_coding - - chr1:34981533-35031741:- chr1:35004005:- chr1:35447134-35497342:- chr1:35469606:- chr1:34785396,chr1:34785399 chr1:35004303,chr1:35004303 NA NA chr1:35250997,chr1:35251000 chr1:35469904,chr1:35469904 NA NA sense sense stop-codon intron CDS/splice-site duplication high none UPF0767_family(100%)| UPF0767(41%)|DUF4371(100%),DoxX(100%),DoxX_2(100%) 1 1 1 15 64 ENST00000426886.1 ENST00000487874.1 upstream downstream mismappers(1),mismatches(1) CGGAGAGCGGGGGCCGCACTGGGGAGTGTGGGCTGGaCCGCAG___ATGTCATGTGGCCTGTGTTTTGGACCGTGGTTCGTACCTATGCTCCTTATGTCACATT...ATCTCAGAGCGCCGGGAGGATCGCAAGCTGGATGAGCTTCTAGGCAAGGACCACACGCAG___TGACATCACCAAGGAGATGCCTGCGTCCAACAAACCTAGCATTCTCCAGAGCCCCGTGCCTGACCAGTGCTTGGAG|GTGCAGTTACTAAAGAGGCAGCAAAGATCATTCAAGAT___GAAAGTACACAGGAAGATGCTATGAAATTTCCATCTTCCCAATCTTCCCAGCCTTCCAGGCTTTTAAAGAACAAAGGCATATCATGCAAACCCGTCACACAGACCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24843 MGLL::KBTBD12 ENSG00000074416.16::ENSG00000187715.13 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MGLL ENSG00000074416.16 protein_coding - - chr3:127689062-128052190:- chr3:127710576:- chr3:127407905-127771033:- chr3:127429419:- KBTBD12 ENSG00000187715.13 protein_coding + - chr3:127915232-127987671:+ chr3:127942901:- chr3:127634075-127706514:+ chr3:127661744:- chr3:127709147,chr3:127709152 chr3:127945826,chr3:127945828 NA NA chr3:127427990,chr3:127427995 chr3:127664669,chr3:127664671 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none Serine_aminopeptidase__S33(64%)| Abhydrolase_1(100%),Abhydrolase_3(39%),Abhydrolase_6(79%),BACK(100%),BTB(100%),Esterase(100%),Hydrolase_4(85%),Kelch_1(100%),Kelch_2(100%),Kelch_4(100%),Kelch_5(100%),Kelch_6(100%),Lipase_3(100%)| 5 1 1 861 2 ENST00000648300.1 unknown upstream downstream duplicates(1) CTGGACCTGCTGGTGTTCGCCCACGACCATG___TTGGCCACGGACAGAGCGAAGGGGAGAGGATGGTAGTGTCTGACTTCCACGTTTTCGTCAGGGATGTGTTGCAGCATGTGGATTCCATGCAGAAAGACTACCCTGGGCTTCCTGTCTTCCTTCTGGGCCACTCCATG___GGAGGCGCCATCGCCATCCTCACGGCCGCAGAGAGGCCGGGCCACTTCGCCGGCATGGTACTCATTTCGCCTCTGGTTCTTGCCAATCCTGAATCTGCAACAACTTTCAAG___GTCCTTGCTGCGAAAGTGCTCAACCTTGTGCTGCCAAACTTGTCCCTCGGGCCCATCGACTCCAGCGTGCTCTCTCGGAATAAGACAGAG|GTCAGCTTCCTCTTTGACCTTCTTTGCCATGTTATGGTGCAGCAAGAAAGCCCTTGCCAGAAGCCAAGGTCATGTCCTTGAACTTCCCAGTCTGCAGAACCATGAGCTAAATAAAC LDLLVFAHDHVGHGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLVLPNLSLGPIDSSVLSRNKTE|vsflfdllchvmvqqespcqkprscp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24897 PLA2G12A::MCUB ENSG00000123739.11::ENSG00000005059.16 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLA2G12A ENSG00000123739.11 protein_coding - - chr4:109709989-109730070:- chr4:109717548:- chr4:110631145-110651226:- chr4:110638704:- MCUB ENSG00000005059.16 protein_coding + - chr4:109560209-109688719:+ chr4:109660807:- chr4:110481365-110609875:+ chr4:110581963:- chr4:109715126,chr4:109715135 chr4:109666142,chr4:109666141 NA NA chr4:110636282,chr4:110636291 chr4:110587298,chr4:110587297 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Group_XII_secretory_phospholipase_A2_precursor_(PLA2G12)(82%)| PLA2G12(88%)| 1 14 36 205 88 ENST00000243501.10 unknown upstream downstream duplicates(2),mismappers(36),mismatches(3) GACG___GATCTAAGCCTTTCCCACGTTATGGTTATAAACCCTCCCCACCGAATGGATGTGGCTCTCCACTGTTTGGTGTTCAT___CTTAACATTGGTATCCCTTCCCTGACAAAGTGTTGCAACCAACACGACAGGTGCTATGAaACCTGTGGCAAAAGCAAGAATGACTGTGATGAAGAATTCCAGTATTGCCTCTCCAAGATCTGCCGAGATGTACAGAAAACACTAGGACTAACTCAGCATGTTCAGG|TTTCACTCCTGTTGCCCAGACTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG___GTCCTGAAGGAATGAACCAACTGTTGACAACATTGGTTTGACTACGAATTGACA DGSKPFPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQHDRCYETCGKSKNDCDEEFQYCLSKICRDVQKTLGLTQHVQ|vslllprlecngvisahcnlcllgssnspasasqvagitgpegmnqllttlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24898 ENSG00000285330::MCUB ENSG00000285330.1::ENSG00000005059.16 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285330 ENSG00000285330.1 protein_coding - - chr4:109713916-109801999:- chr4:109717548:- chr4:110635072-110723155:- chr4:110638704:- MCUB ENSG00000005059.16 protein_coding + - chr4:109560209-109688719:+ chr4:109660807:- chr4:110481365-110609875:+ chr4:110581963:- chr4:109715126,chr4:109715135 chr4:109666142,chr4:109666141 NA NA chr4:110636282,chr4:110636291 chr4:110587298,chr4:110587297 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none Group_XII_secretory_phospholipase_A2_precursor_(PLA2G12)(78%),Low-density_lipoprotein_receptor_domain_class_A(100%),Scavenger_receptor_cysteine-rich_domain(100%),Trypsin(100%)| Kazal_2(100%),Ldl_recept_a(100%),PLA2G12(88%),SRCR(100%),Trypsin(100%),Trypsin_2(100%)| 1 14 32 205 88 ENST00000645635.1 unknown upstream downstream duplicates(2),mismappers(30),mismatches(3) GACG___GATCTAAGCCTTTCCCACGTTATGGTTATAAACCCTCCCCACCGAATGGATGTGGCTCTCCACTGTTTGGTGTTCAT___CTTAACATTGGTATCCCTTCCCTGACAAAGTGTTGCAACCAACACGACAGGTGCTATGAaACCTGTGGCAAAAGCAAGAATGACTGTGATGAAGAATTCCAGTATTGCCTCTCCAAGATCTGCCGAGATGTACAGAAAACACTAGGACTAACTCAGCATGTTCAGG|TTTCACTCCTGTTGCCCAGACTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG___GTCCTGAAGGAATGAACCAACTGTTGACAACATTGGTTTGACTACGAATTGACA dGSKPFPRYGYKPSPPNGCGSPLFGVHLNIGIPSLTKCCNQHDRCYETCGKSKNDCDEEFQYCLSKICRDVQKTLGLTQHVQ|vslllprlecngvisahcnlcllgssnspasasqvagitgpegmnqllttlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24899 PHF20::NFS1 ENSG00000025293.17::ENSG00000244005.13 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF20 ENSG00000025293.17 protein_coding + + chr20:35771974-35950370:+ chr20:35801605:+ chr20:34359896-34538292:+ chr20:34389527:+ NFS1 ENSG00000244005.13 protein_coding - + chr20:35668052-35699355:- chr20:35695183:+ chr20:34255974-34287277:- chr20:34283105:+ chr20:35827505,chr20:35827557 chr20:35688273,chr20:35688325 NA NA chr20:34415427,chr20:34415479 chr20:34276195,chr20:34276247 NA NA sense antisense stop-codon CDS/splice-site intron duplication/5'-5' high none none MBT(0%)| 9 8 21 236 20 ENST00000374012.8 unknown downstream upstream none AGCGGCGCAGCCGGAGTGGGGCCGTGAG___GAGAATAAAGGCAGCCCCGTTGATGACTGAAAATGACAAAGCATCCACCTAACAGACGAGGAATCAGCTTTGAAGTGGGAGCCCAGTTGGAAGCCCGGGACCGTTTAAAAAACTG|AAACCATCTCCACCTTTGGAGGAACCTTCACCCCGACTCTCTGGTCTCTGCAGTCCCAAGGAAGGATGCCTTCCTGTTAACATGATCAGGCAGAGTGCTGATGACCCTGAAGCCCGTCCTAGGCCTCCTATATTCAGGCCAAGGTCAAAGAAACCAACACTGGCAGCACAGTTCAAAGACAAAGATGAGAGCAAGTGGAGCCAGAGTTCAAAGTACAGCAAGCCACAATTTCTCAGAGCCTTGGCATTTACTCACATAATCCTGGCAACCA...TCTATGAAACACCAACGTGACTACTAAAAGTACCTTTTCCTTGCATTAGCACCAAAGATCTTCTATGTACCCAGGACAAAATGACTGATCCCAGAATGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24900 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4213 TRUE 1590 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75636726:+ chr13:76194570-76434006:+ chr13:76210862:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75604769:+ chr13:76123619-76180156:+ chr13:76178905:+ chr13:75677630,chr13:75677631 chr13:75596786,chr13:75596781 NA NA chr13:76251766,chr13:76251767 chr13:76170922,chr13:76170917 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Calponin_homology_(CH)_domain(8%)|Ubiquitin_carboxyl-terminal_hydrolase__family_1(11%) CH(0%)|Peptidase_C12(1%) 8 2 9 42 213 ENST00000377534.8 ENST00000377595.8 downstream upstream none GGGCCGGATCGCGGCGGGAGAGCGGGTAGCGGGCTCAGCTGGCCGGGGCTCAG___CCATGGAAGGGCTGGAGGAGGCAGAGGCCAACTGCTCCGTGGCGTTCGCTGAGGCTCAGAGATGGGTGGAG|ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGGAAACACCAAAAACTGTATTATTTGCAACTAAATTTTCT MEGLEEAEANCSVAFAEAQRWVE|mggshfqltmvklvmkly* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 76210862 TRUE 76140831 FALSE YES NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24901 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4213 TRUE 1590 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75636726:+ chr13:76194570-76434006:+ chr13:76210862:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75605729:+ chr13:76123619-76180156:+ chr13:76179865:+ chr13:75677630,chr13:75677631 chr13:75596786,chr13:75596781 NA NA chr13:76251766,chr13:76251767 chr13:76170922,chr13:76170917 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Calponin_homology_(CH)_domain(8%)|Ubiquitin_carboxyl-terminal_hydrolase__family_1(4%) CH(0%)|Peptidase_C12(0%) 1 0 5 42 174 ENST00000377534.8 ENST00000377595.8 downstream upstream none CCTGATTTGAGCACTGGTGTGAAAAAGACCCGCGCAAGCCGACCCGTGTGCCTCCCGCCCCGCCCCCAACCCCCCGGCCCTGCACACCTACCCAGGGCCGC...CTGGGCCGGATCGCGGCGGGAGAGCGGGTAGCGGGCTCAGCTGGCCGGGGCTCAG___CCATGGAAGGGCTGGAGGAGGCAGAGGCCAACTGCTCCGTGGCGTTCGCTGAGGCTCAGAGATGGGTGGAG|GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGGAAACACCAAAAACTGTATTATTTGCAACTAAATTTTCTCTGCC MEGLEEAEANCSVAFAEAQRWVE|DAIEVCKKFMERDPDELRFNAIALSAA* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 76210862 TRUE 76140831 FALSE YES NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24902 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4213 TRUE 1590 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75635890:+ chr13:76194570-76434006:+ chr13:76210026:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75604769:+ chr13:76123619-76180156:+ chr13:76178905:+ chr13:75677630,chr13:75677631 chr13:75596786,chr13:75596781 NA NA chr13:76251766,chr13:76251767 chr13:76170922,chr13:76170917 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(11%) |Peptidase_C12(1%) 0 1 1 9 213 ENST00000533305.5 ENST00000377595.8 downstream upstream none CGGGTAGCGGGCTCAGCTGGCCGGGGCTCAG|ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 76210862 FALSE 76140831 FALSE YES NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24903 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4213 TRUE 1590 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75623320:+ chr13:76194570-76434006:+ chr13:76197456:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75605729:+ chr13:76123619-76180156:+ chr13:76179865:+ chr13:75677630,chr13:75677631 chr13:75596786,chr13:75596781 NA NA chr13:76251766,chr13:76251767 chr13:76170922,chr13:76170917 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(4%) |Peptidase_C12(0%) 0 1 1 5 174 ENST00000341547.8 ENST00000377595.8 downstream upstream none CAAAATTCAGGAAGGACTATTCTCATTAAG|GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGATGAACTAAGATTTAATGCGATTGCTCTTTCTGCAGCATAGCTTGTCAATAATGGAAACACCAAAAACTGTATTATTTGCAACTAAATTTTCTCTGCCAT QNSGRTILIK|DAIEVCKKFMERDPDELRFNAIALSAA* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 76210862 FALSE 76140831 FALSE YES NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24904 LMO7::UCHL3 ENSG00000136153.20::ENSG00000118939.19 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4213 TRUE 1590 LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75621868:+ chr13:76194570-76434006:+ chr13:76196004:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75604769:+ chr13:76123619-76180156:+ chr13:76178905:+ chr13:75677630,chr13:75677631 chr13:75596786,chr13:75596781 NA NA chr13:76251766,chr13:76251767 chr13:76170922,chr13:76170917 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Ubiquitin_carboxyl-terminal_hydrolase__family_1(11%) |Peptidase_C12(1%) 0 1 1 4 213 ENST00000341547.8 ENST00000377595.8 downstream upstream none TATGGGTACGGcCTAAAGCTATTTTAATTTTTTTATTACAACTGCTATGAAGAAAATTAGGATATGCCATATTTTCACGTTTTACAGTTGGATGTCCTATG...CTGGAAATTTGGAGGCAACTGATATGTGCTCATGTCTGCATCTGTGTGGGTTGGCTGTATCTCAGGGACAGAGTCTGCAGCAAAAAAG|ATGGGCGGAAGCCATTTCCAATTAACCATGGTGAAACTAGTGATGAAACTTTATTAGAG___GATGCCATAGAAGTTTGCAAGAAGTTTATGGAGCGCGACCCTGA LEIWRQLICAHVCICVGWLYLRDRVCSKK|dGRKPFPINHGETSDETLLEDAIEVCKKFMERDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 76210862 FALSE 76140831 FALSE YES NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24909 MLLT10::MALRD1 ENSG00000078403.17::ENSG00000204740.11 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21681376:+ chr10:21813575-22032559:+ chr10:21970305:+ MALRD1 ENSG00000204740.11 protein_coding + + chr10:19048801-19790401:+ chr10:19257684:+ chr10:19337730-20079330:+ chr10:19546613:+ chr10:21711775,chr10:21711771,chr10:21711776 chr10:19239146,chr10:19239141,chr10:19239141 NA NA chr10:22000704,chr10:22000700,chr10:22000705 chr10:19528075,chr10:19528070,chr10:19528070 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none PHD-finger(100%),PHD-zinc-finger_like_domain(100%)|EGF-like_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(82%),MAM_domain__meprin/A5/mu(47%) PHD(100%),PHD_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%)|EGF(100%),Ldl_recept_a(93%),MAM(79%),hEGF(100%) 0 2 8 84 8 ENST00000438473.6 ENST00000454679.7 downstream upstream none CTCACAGCTCAGGTCAAAGGGGAAGAAAGCCTGGTGGTGGAAGAAATCCAGGAACAACTGTGTCAGCAGCTAGCCCTTTTCCTCAAG___...TTTACAGAGCCTCAGTGTTGGCTCATCTCCAGTTGGTTCAG___AAATTTCCATGCAGTATCGGCATGATGGAGCTTGCCCAACAACTA|ATATTGGTGGAGGCTTCAGTGGGAGATGGCTTCACTGGAGATATTGCGATTGATGATCTGTCATTTATGGACTGCACCCTCTACCCTG___GTAATTTGCCAGCAGACCTCCCAACTCCACCAGAAACGTCAGTTCCTGTAACATTACCTCCACACAACTGCACAGACAATGAATTTATCTGCAGGTCTGATGGTCACTGCATTGAAAAAATGCAGAAATGTGATTTTAAATATGACTGCCCTGACAAATCAGATGAAGCATCCTGTG___TTATGGAAGTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24910 PPL::SEC14L5 ENSG00000118898.16::ENSG00000103184.12 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4215 TRUE 1591 PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4902406:- chr16:4932508-5010742:- chr16:4952407:- SEC14L5 ENSG00000103184.12 protein_coding + + chr16:4958330-5019157:+ chr16:4962756:+ chr16:5008331-5069158:+ chr16:5012757:+ chr16:4902326,chr16:4902329 chr16:4962681,chr16:4962678 NA NA chr16:4952327,chr16:4952330 chr16:5012682,chr16:5012679 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none |CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(96%) |CRAL_TRIO(100%),CRAL_TRIO_N(100%),PRELI(89%) 1 0 5 70 5 ENST00000345988.7 unknown upstream upstream none GTTGGACTCTGAGAAGCTGCTCTATGTGCTAGAGGCGGATGCGGCCATTGCCAAGCACATGAAGCACCCACAGGGGGACATGATCGCCGAGGA___TATCCGCCAGCTGAAGGAGCGTGTGACCAACCTGCGCGGGAAACACAAGCAGATCTACAGGCTGGCGGTGAAGGAAGTGGATCCACAGGTCAACTGGGCGGCACTGGTGGAGGAGAAGCTG|AGGGACTGCCACAACCCTGTCATTCTATCTTCCATACAGTCCTTGTCTGTGAAATGGTCCCAAGCCACAGCAACACTGCCAACAAAGCCACTTTGCCGACTGTTTACAAAACATTATTGTCCCCAAAATAGCTGCATAACTCAACGTAACTTGCACACTGTGGAAGCACAAAAGGGGTTTTCTATGCTTAATGTTCGTCTTTG LDSEKLLYVLEADAAIAKHMKHPQGDMIAEDIRQLKERVTNLRGKHKQIYRLAVKEVDPQVNWAALVEEKL|rdchnpvilssiqslsvkwsqatatlptkplcrlftkhycpqnscitqrnlhtveaqkgfsmlnvrl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24911 PPL::SEC14L5 ENSG00000118898.16::ENSG00000103184.12 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4215 TRUE 1591 PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4902406:- chr16:4932508-5010742:- chr16:4952407:- SEC14L5 ENSG00000103184.12 protein_coding + + chr16:4958330-5019157:+ chr16:4987557:+ chr16:5008331-5069158:+ chr16:5037558:+ chr16:4902326,chr16:4902329 chr16:4962681,chr16:4962678 NA NA chr16:4952327,chr16:4952330 chr16:5012682,chr16:5012679 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |CRAL/TRIO__N-terminal_domain(100%),CRAL/TRIO_domain(100%),PRELI-like_family(96%) |CRAL_TRIO(100%),CRAL_TRIO_N(100%),PRELI(13%) 0 1 1 70 3 ENST00000345988.7 ENST00000251170.12 upstream upstream none GGCGGATGCGGCCATTGCCAAGCACATGAAGCACCCACAGGGGGACATGATCGCCGAGGA___TATCCGCCAGCTGAAGGAGCGTGTGACCAACCTGCGCGGGA...GGAAGTGGATCCACAGGTCAACTGGGCGGCACTGGTGGAGGAGAAGCTG|GCCTACGAGAAGCGTTTCCCCACGTGCCCACAGATCCCAGTCTTCCTGGGCAGCGAGGTCTTGCGCGAGTCCCGCAGCCCGGACGGGGCTGTGCACGTGGTGGAGCGGAGCTGCCGGCTGCGCGTGGAC EVDPQVNWAALVEEKL|AYEKRFPTCPQIPVFLGSEVLRESRSPDGAVHVVERSCRLRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24936 EIF3H::ENSG00000254303 ENSG00000147677.12::ENSG00000254303.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116726016:- chr8:117654369-117779164:- chr8:117738255:- ENSG00000254303 ENSG00000254303.1 lncRNA - + chr8:121954640-122127184:- chr8:122108505:+ chr8:122966879-123139423:- chr8:123120744:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(56%)| JAB(30%)| 212 148 300 3184 699 ENST00000276682.8 unknown upstream upstream duplicates(83),low_entropy(7),mismatches(14) CGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT___GTGGTATTAAAGATAATCAAACATTATCAAGAAGAAGGACAAGGAACTGAAGTTGTTCAAGGAGTGCTTTTGGGTCTGGTTGTAGAAGATCGGCTTGAAATTACCAACTGCTTTCCTTTCCCTCAGCACACAGAGGATGATGCTGACTTTGATGAAG|ATCCTTGCCCAAGTTTTTGGAACATGGACTTTGGATGGAGATCTGGATGCAAGGACTTTAGAGTGGAATGAACCAGGGGATTCCACCTGAATTCATGTGAGAGAAGTGGGACTGGGAAGAAAGAGAAGGTGAACTGCAATGCAAGTTAAAAGGAAGCCTCAGAAATCCATGGGAAGCTCTGAAACTGGAGTGACTGTTCAGAGATAGTTTAAGTGGAAGTACAAGGCCCACTTATATTTCAGCATCAACCAGCCACTCTGTGAACACAGATGTGAG RKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFPQHTEDDADFDE|dpcpsfwnmdfgwrsgckdfrve* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24937 ZHX1::TAF2 ENSG00000165156.15::ENSG00000064313.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2293 TRUE 4217 TRUE 1592 ZHX1 ENSG00000165156.15 protein_coding - - chr8:123248451-123275541:- chr8:123267273:- chr8:124260691-124287781:- chr8:124279513:- TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119806401:- chr8:120743014-120845103:- chr8:120818641:- chr8:123250456,chr8:123250460 chr8:119817070,chr8:119817071 NA NA chr8:124262696,chr8:124262700 chr8:120829310,chr8:120829311 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none DUF5588(0%)| 124 71 188 3473 1424 ENST00000395571.8 ENST00000685503.1 upstream downstream duplicates(47),mismatches(11) GCCGGTTTGAAATGCAAGATGGCGGCGGCGTGGCGCTGAGAGGCGCGGCGGCCCCTGCAG___GAGAAGACAGACTGCTGCTTTGGACCTGTTGGTAATGATGGCCTGAGCTAAACATCTAACTAGAAGGGATACCCTTCCATTTCAAAGAACAGAATGCTAAGGAAGCTGTGGCAA|GAGAAACCTCAATTATTTTTCCAATGCTTATGCAGCTGCAGTTAGTGCTGTGGACCCTGATGCAGGAAATGGAGAACTTTGCATTAAGGTTCCATCAGAGCTATGGAAACACGTTGATG___AGTTAAAGGTCCTGAAGATACACATCAATTTTTCTTTGGATCAGCCCAAAGGAGGTCTTCATTTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24939 ZHX1::TAF2 ENSG00000165156.15::ENSG00000064313.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4217 TRUE 1592 ZHX1 ENSG00000165156.15 protein_coding - - chr8:123248451-123275541:- chr8:123267273:- chr8:124260691-124287781:- chr8:124279513:- TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119804019:- chr8:120743014-120845103:- chr8:120816259:- chr8:123250456,chr8:123250460 chr8:119817070,chr8:119817071 NA NA chr8:124262696,chr8:124262700 chr8:120829310,chr8:120829311 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none DUF5588(0%)| 2 1 92 3473 1507 ENST00000395571.8 ENST00000378164.7 upstream downstream duplicates(10),mismatches(3) GCCGGTTTGAAATGCAAGATGGCGGCGGCGTGGCGCTGAGAGGCGCGGCGGCCCCTGCAG___GAGAAGACAGACTGCTGCTTTGGACCTGTTGGTAATGATGGCCTGAGCTAAACATCTAACTAGAAGGGATACCCTTCCATTTCAAAGAACAGAATGCTAAGGAAGCTGTGGCAA|AGTTAAAGGTCCTGAAGATACACATCAATTTTTCTTTGGATCAGCCCAAAGGAGGTCTTCATTTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGAGAGGTGCTCATGTTTTCTCTTGTGGGTATCAAAATTCTACAAG___ATTTTGGTTCCCTTGTGTTGATTCATACTCTGAATTGTGTACATGGAAATTAGAATTTACAGTAGATGCTGCAATGGTTGCTGTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24940 ZHX1-C8orf76::TAF2 ENSG00000259305.6::ENSG00000064313.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4218 TRUE 1593 ZHX1-C8orf76 ENSG00000259305.6 protein_coding - - chr8:123226189-123274284:- chr8:123267273:- chr8:124238429-124286524:- chr8:124279513:- TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119806401:- chr8:120743014-120845103:- chr8:120818641:- chr8:123250456,chr8:123250460 chr8:119817070,chr8:119817071 NA NA chr8:124262696,chr8:124262700 chr8:120829310,chr8:120829311 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Family_of_unknown_function_(DUF5588)(0%)| DUF5588(0%)| 91 71 139 3473 1424 ENST00000622816.2 ENST00000691880.1 upstream downstream duplicates(38),mismatches(5) GTTTGAAATGCAAGATGGCGGCGGCGTGGCGCTGAGAGGCGCGGCGGCCCCTGCAG___GAGAAGACAGACTGCTGCTTTGGACCTGTTGGTAATGATGGCCTGAGCTAAACATCTAACTAGAAGGGATACCCTTCCATTTCAAAGAACAGAATGCTAAGGAAGCTGTGGCAA|GAGAAACCTCAATTATTTTTCCAATGCTTATGCAGCTGCAGTTAGTGCTGTGGACCCTGATGCAGGAAATGGAGAACTTTGCATTAAGGTTCCATCAGAGCTATGGAAACACGTTGATG___AGTTAAAGGTCCTGAAGATACACATCAATTTTTCTTTGGATCAGCCCAAAGGAGGTCTTCATTTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGAGAGGT MLRKLWQ|EKPQLFFQCLCSCS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24942 ZHX1-C8orf76::TAF2 ENSG00000259305.6::ENSG00000064313.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4218 TRUE 1593 ZHX1-C8orf76 ENSG00000259305.6 protein_coding - - chr8:123226189-123274284:- chr8:123267273:- chr8:124238429-124286524:- chr8:124279513:- TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119804019:- chr8:120743014-120845103:- chr8:120816259:- chr8:123250456,chr8:123250460 chr8:119817070,chr8:119817071 NA NA chr8:124262696,chr8:124262700 chr8:120829310,chr8:120829311 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion medium none Family_of_unknown_function_(DUF5588)(0%)| DUF5588(0%)| 1 1 70 3473 1507 ENST00000622816.2 ENST00000378164.7 upstream downstream duplicates(10),mismatches(3) GCCGGTTTGAAATGCAAGATGGCGGCGGCGTGGCGCTGAGAGGCGCGGCGGCCCCTGCAG___GAGAAGACAGACTGCTGCTTTGGACCTGTTGGTAATGATGGCCTGAGCTAAACATCTAACTAGAAGGGATACCCTTCCATTTCAAAGAACAGAATGCTAAGGAAGCTGTGGCAA|AGTTAAAGGTCCTGAAGATACACATCAATTTTTCTTTGGATCAGCCCAAAGGAGGTCTTCATTTTGTGGTACCCAGTGTAGAGGGAAGTATGGCAGAGAGAGGTGCTCATGTTTTCTCTTGTGGGTATCAAAATTCTACAAG___ATTTTGGTTCCCTTGTGTTGATTCATACTCTGAATTGTGTACATGGAAATTAGAATTTACAGTAGATGCTGCAATGGTTGCTGTTTC MLRKLWQ|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24946 EIF3H::HAS2-AS1 ENSG00000147677.12::ENSG00000248690.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4219 TRUE 1594 EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116755666:- chr8:117654369-117779164:- chr8:117767905:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888825:+ chr8:122651533-123006424:+ chr8:122901064:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(9%)| JAB(0%)| 15 35 108 4120 230 ENST00000521861.6 ENST00000664717.1 upstream upstream duplicates(27),mismappers(1),mismatches(5) GAAAGATGGCGTCCCGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT|ATTTTGGTATCTGACTGATGCTGTCTTCGTGGAATGAGTTAGGAAAGAGTCCCTCCTCGTCAACTGTTGGGAATACATTCAGCAGGGTTGGTATCATTGCATGTCTGGCAGAATTTGACTAGGAATCCATCTGGTCCAGGATTTTTTTTGTTG___ATCCTTGCCCAAGTTTTTGGAACATGGACTTTGGATGGAGATCTGGATGCAAGGACTTTAGAGTGGAATGAAC MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGL|ilvsd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24949 EIF3H::HAS2-AS1 ENSG00000147677.12::ENSG00000248690.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4219 TRUE 1594 EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116755666:- chr8:117654369-117779164:- chr8:117767905:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121879630:+ chr8:122651533-123006424:+ chr8:122891869:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(9%)| JAB(0%)| 0 1 132 4120 107 ENST00000521861.6 ENST00000664717.1 upstream upstream duplicates(23),mismappers(1),mismatches(9) GGAAAGATGGCGTCCCGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT|TGTAATATGAATCAGAAAACATGAACTCAGACTGATGCTGGAAGCCACCTTATGACTATAAGCAGAATCAGCCTCGTTATGACaTTGATGCTATAAGCAACGGACTGAAAGATACAAAGAGCAAGCAGACAGGATG___ATTTTGGTATCTGACTGATGCTGTCTTCGTGGAATGAGTTAGGAAAGAGTCCCTCCTCGTCAACTGTTGGGAATACATTCAGCAGGGTTG MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGL|cnmnqkt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24952 EIF3H::HAS2-AS1 ENSG00000147677.12::ENSG00000248690.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4219 TRUE 1594 EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116755666:- chr8:117654369-117779164:- chr8:117767905:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121907644:+ chr8:122651533-123006424:+ chr8:122919883:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(9%)| JAB(0%)| 0 1 51 4120 5 ENST00000521861.6 ENST00000662694.1 upstream upstream duplicates(6),mismappers(1),mismatches(3) GAAAGATGGCGTCCCGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT|GGAGGGGCCAAGATGGCTGAATAGGAACAGCTCCAATCTGCAGCTCCAAGCAAGACGAATGCAGAAG___AAATGCGTAAATGGCGACAGTAGAGCCAGCCTTCATGAATCCAGAAATGTGAGCCACATTTTGAGGATAGCAGAGTCACTGCAGAAGCCTGG...AAGTTTTTGGAACATGGACTTTGGATGGAGATCTGGATGCAAGGACTTTAGAGTGGAATGAACCAGGGGATTCCACCTGAATTCATGTGAGAGAAGTGGG MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGL|ggakmae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24953 EIF3H::HAS2-AS1 ENSG00000147677.12::ENSG00000248690.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4219 TRUE 1594 EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116755666:- chr8:117654369-117779164:- chr8:117767905:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121993598:+ chr8:122651533-123006424:+ chr8:123005837:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(9%)| JAB(0%)| 0 1 46 4120 137 ENST00000521861.6 ENST00000664717.1 upstream upstream duplicates(5),mismatches(3) GGAAAGATGGCGTCCCGCAAGGAAGGTACCGGCTCTACTGCCACCTCTTCCAGCTCCACCGCCGGCGCAGCAGGGAAAGGCAAAGGCAAAGGCGGCTCGGGAGATTCAGCCGTGAAGCAAGTGCAGATAGATGGCCTT|AAATGCGTAAATGGCGACAGTAGAGCCAGCCTTCATGAATCCAGAAATGTGAGCCACATTTTGAGGATAGCAGAGTCACTGCAGAAGCCTGGATCCTTGCATAACCTTGTCGAGTGGGAAAATCTACCCATACTTGACCAACCACCTAACTGGGGGCTCTACATCTGAaAGAAATGATTTTTTATCTTATTTAAGCCACTGTAGTTAGGAGTCAGTTTATTACAGGACATTGCCTGGTGTTCCAACAAAT MASRKEGTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGL|kcvngdsraslhesrnvshilriaeslqkpgslhnlvewenlpildqppnwglyi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24956 CSMD3::LINC00824 ENSG00000164796.18::ENSG00000254275.6 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113098756:- chr8:113235157-114449168:- chr8:114110985:- LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:113035514,chr8:113035519 chr8:128437423,chr8:128437425 NA NA chr8:114047743,chr8:114047748 chr8:129449669,chr8:129449671 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none CUB_domain(11%),Sushi_repeat_(SCR_repeat)(3%)| CUB(13%),Sushi(0%)| 63 52 121 258 133 ENST00000297405.10 ENST00000520766.5 upstream downstream duplicates(13),low_entropy(4),mismappers(3),mismatches(6) ATCCGCTACAGCTGTGTAACTGGATACATCCTTGATGGCCACCCTCAGCTCACCTGCATgGCCAATTCAGTTAATACAGCTTCGTGGGATTTTCCTGTTCCTATCTGTAGAG___CTGAAGATGCTTGTGGAGGAACAATGAGAGGATCCAGTGGCATCATATCCAGCCCTAGTTTTCCTAATGAGTACCATAACAATGCTGATTGCACTTGGACCATTGTAGCAGAGCCTGGGGACACAATTTCACTCATATTTACTGATTTTCAAATGGAAGAGAAATATGATTACTTAGAAATAGAAGGTTCTGAGCCACCTACCATATG|GTTGAACTGGTTTGTTGAACTTTATGGATGGAGCCAGCCAACAGGATGACATTGTGGCAGAGAAAGAAGCTTGCAGCTTCTTGCATCAGAAAATCAGATAGAGCCTCTCTGGCAAGAAGCTGCAGACACAAAAGAAGCTTGCATTGAAG___ACGGCAGGAATGCAAAATGGCAAGAGGCTCCATCCTTGAATCACCATTTGGAGAAGAGTTAACTGACAAA IRYSCVTGYILDGHPQLTCmANSVNTASWDFPVPICRAEDACGGTMRGSSGIISSPSFPNEYHNNADCTWTIVAEPGDTISLIFTDFQMEEKYDYLEIEGSEPPTIw|lnwfvelygwsqptg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 24958 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2294 TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126838573:+ chr8:127568568-128431295:+ chr8:127850818:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556405:- chr8:125563025-125740714:- chr8:125568646:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense unknown intron CDS/splice-site inversion high none |WH2_motif(100%) |WH2(100%) 8 22 62 198 257 unknown ENST00000518547.6 downstream downstream duplicates(6),low_entropy(2),mismatches(9) TTAGATCTCAGACTGCCGTGCTAGCAATCAGCGAGACTCTGTGGGCGTAGGACCCTCCGAGCCAG___...CGAGAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG___GAGAGATATGTGAATCCGTGAATTTTGCCTCTGGATTGACTCCCTTGTGGATTGG|GACTGGGCTAAGCCTGGGCCCTATGACCAGCCTCTGGTGAACACCCTGCAGCGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACCTGCAGCAGCTGAGGAGGCTCAGAGACCACGGAGCATGACTGTATCGGCTGCCACCAGG___CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAGGAGCAGCCGGGACTCGCTTCAGTGCTCCAGCGGCTACAGCACCCAGACAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24959 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126823946:+ chr8:127568568-128431295:+ chr8:127836191:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556405:- chr8:125563025-125740714:- chr8:125568646:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |WH2_motif(100%) |WH2(100%) 0 5 40 125 257 ENST00000643101.1 ENST00000518547.6 downstream downstream duplicates(1),mismappers(1),mismatches(2) CATGATTGTGAGGCTTCCCCACCCACGTGGAAAT|GACTGGGCTAAGCCTGGGCCCTATGACCAGCCTCTGGTGAACACCCTGCAGCGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACCTGCAGCAGCTGAGGAGGCTCAGAGACCACGGAGCATGACTGTATCGGCTGCCACCAGG___CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24960 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126823946:+ chr8:127568568-128431295:+ chr8:127836191:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556354:- chr8:125563025-125740714:- chr8:125568595:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |WH2_motif(100%) |WH2(100%) 0 0 29 125 314 ENST00000643101.1 ENST00000431961.6 downstream downstream duplicates(1),mismappers(1),mismatches(2) CGCCATGATTGTGAGGCTTCCCCACCCACGTGGAAAT|CGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACCTGCAGCAGCTGAGGAGGCTCAGAGACCACGGAGCATGACTGTATCGGCTGCCACCAGG___CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24961 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126823946:+ chr8:127568568-128431295:+ chr8:127836191:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124555904:- chr8:125563025-125740714:- chr8:125568145:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none |WH2_motif(100%) |WH2(100%) 0 0 16 125 418 ENST00000643101.1 ENST00000518547.6 downstream downstream duplicates(2),mismappers(3),mismatches(4) CTGCCGCCATGATTGTGAGGCTTCCCCACCCACGTGGAAAT|CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAGGAGCAGCCGGGACTCGCTTCAGTGCTCCAGCGGCTACAGCACCCAGACAACCACCCCCTGCTGCTCTGAGGACACCATCCCTTCCCAAG___TTTCAGATTATGATTATTTCTCTGTAAGTGGTGACCAGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24965 HTT::TMEM131L ENSG00000197386.14::ENSG00000121210.16 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HTT ENSG00000197386.14 protein_coding + + chr4:3041363-3243957:+ chr4:3189093:+ chr4:3043090-3245684:+ chr4:3190820:+ TMEM131L ENSG00000121210.16 protein_coding + - chr4:153466346-153636711:+ chr4:153528093:- chr4:154387498-154557863:+ chr4:154449245:- chr4:3192267 chr4:153534770 NA NA chr4:3193994 chr4:154455922 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Huntingtin_protein_region_(100%)| DUF3652(100%)| 19 17 39 184 39 ENST00000680956.1 unknown downstream downstream duplicates(7),low_entropy(1),mismatches(5) TAATTAATAGGTTAAGAGATGGGGACAGTACTTCAACGCTAGAAGAACACAGTGAAGGGAAACAAATAAAGAATTTGCCAGAAGAAACATTTTCAAG___GTTTCTATTACAACTGGTTGGTATTCTTTTAGAAGACATTGTTACAAAACAGCTGAAGGTGGAAATGAGTGAGCAGCAACATACTTTCTATTGCCAGGAACTAGGCACACTGCTAATGTGTCTGATCCACATCTTCAAGTCTG|AGATGAGAGAACTCAACAAGGCGTGGCAGGCAATGCCTTTCCGCAGGACAAGGAAATTCAGACCAGACGGTGAGGAAAAGAACCTGCTCAGTTAATGGTATGGCTGCACAACACACAAACTGAACTAAAATTACAGAAGCTTCTCGAAGTTGTACGCATATAGTACCAAAAAAGAGGAAACTGAAGAGAGACAAATGCAAGGTGGTCCTGAGGCAGGTCGCAGTAAAAGGACGAGGTTAGACC INRLRDGDSTSTLEEHSEGKQIKNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKS|emrelnkawqampfrrtrkfrpdgeeknlls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24967 ENSG00000253573::MTSS1 ENSG00000253573.2::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000253573 ENSG00000253573.2 lncRNA - + chr8:126766196-126846981:- chr8:126838573:+ chr8:127778441-127859226:- chr8:127850818:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556405:- chr8:125563025-125740714:- chr8:125568646:- chr8:126845459 chr8:124557153 NA NA chr8:127857704 chr8:125569394 NA NA antisense sense unknown intron CDS/splice-site inversion/3'-3' high none |WH2_motif(100%) |WH2(100%) 6 12 55 198 257 unknown ENST00000518547.6 downstream downstream duplicates(5),low_entropy(1),mismatches(9) CCTCGCTGCCGCCTTGCAGTTAGATCTCAGACTGCCGTGCTAGCAATCAGCGAGACTCTGTGGGCGTAGGACCCTCCGAGCCAG___...CGAGAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG___GAGAGATATGTGAATCCGTGAATTTTGCCTCTGGATTGACTCCCTTGTGGATTGG|GACTGGGCTAAGCCTGGGCCCTATGACCAGCCTCTGGTGAACACCCTGCAGCGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACCTGCAGCAGCTGAGGAGGCTCAGAGACCACGGAGCATGACTGTATCGGCTGCCACCAGG___CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24969 BLVRA::COA1 ENSG00000106605.11::ENSG00000106603.20 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2297 FALSE NA FALSE NA BLVRA ENSG00000106605.11 protein_coding + + chr7:43758680-43807342:+ chr7:43792812:+ chr7:43798279-43846941:+ chr7:43832411:+ COA1 ENSG00000106603.20 protein_coding - - chr7:43608456-43729717:- chr7:43640649:- chr7:43648055-43769316:- chr7:43680248:- chr7:43800036,chr7:43799989,chr7:43799954 chr7:43642389,chr7:43642436,chr7:43642471 NA NA chr7:43839635,chr7:43839588,chr7:43839553 chr7:43681988,chr7:43682035,chr7:43682070 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Oxidoreductase_family__NAD-binding_Rossmann_fold(95%)|Cytochrome_oxidase_complex_assembly_protein_1(39%) GFO_IDH_MocA(38%)|ABC1(100%),Coa1(12%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 14 14 36 1187 1071 ENST00000265523.9 ENST00000415076.6 downstream downstream duplicates(5),mismatches(2),multimappers(4) TCAG___TGACCGAAGGAAGAGACCAAGATGAATaCAGAG___CCCGAGAGGAAGTTTGGCGTGGTGGTGGTTGGTGTTGGCCGAGCCGGCTCCGTGCGGATGAGGGACTTGCGGAATCCACACCCTTCCTCAGCGTTCCTGAACCTGATTGGCTTCGTGTCGAG___AAGGGAGCTCGGGAGCATTGATGGAGTCCAGCAGATTTCTTTGGAGGATGCTCTTTCCAGCCAAGAGGTGGAGGTCGCCTATATCTGCAGTGAGAGCTCCAGCCATGAGGACTACATCAG___GCAGTTCCTTAATGCTGGCAAGCACGTCCTTGTGGAATACCCCATGACACTGTCATTGGCGGCCGCTCAGGAACTGTGGGAGCTGGCTGAGCAGAAAG|TTGAAGATTCCTGTCTCTGGATCCAAATCAGAGGGCCTTCTCTACGTCCACTCATCCAGAGGTGGCCCCTTTCAGAG___GTGGCACCTTGACGAGGTCTTTTTAGAGCTCAAGGATGGTCAGCAGATTCCTGTGTTCAAGCTCAGTGGGGAAAACGGTGATGAAGTGA MNtEPERKFGVVVVGVGRAGSVRMRDLRNPHPSSAFLNLIGFVSRRELGSIDGVQQISLEDALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQK|vedsclwiqirgpslrpliqrwplsevap* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Biliverdin reductase A Atypical BLVRA P53004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24970 WASHC5::NSMCE2 ENSG00000164961.16::ENSG00000156831.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4222 TRUE 1596 WASHC5 ENSG00000164961.16 protein_coding - - chr8:125024260-125091819:- chr8:125091615:- chr8:126036502-126104061:- chr8:126103857:- NSMCE2 ENSG00000156831.8 protein_coding + - chr8:125091679-125367120:+ chr8:125331905:- chr8:126103921-126379362:+ chr8:126344147:- chr8:125090573 chr8:125339259 NA NA chr8:126102815 chr8:126351501 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 9 20 35 2909 51 ENST00000318410.12 unknown upstream downstream duplicates(2),mismatches(3) CGGAAGTCGGGGTCTGACCCGCTCCAGGTCCGGGACTGCGGATAGAAGAGGACCGCCGCCTTGAGGGAGGGGTGGAAACTGGGTGCCGGCTCCGCGCGCGACCTCCGGCCCTGCGCGTGCGCCGTGGCGCGGCCCGGCTGACAG|GCCATATCTGACTGAAGTTTACAAGAAGTACCCAGACCAGACTTCTTCCACTGCTCCTTCCGAAATTTTACCCCTGCAAAGTAAATTTGTGATTGCAAGAAGTGGACCATGCTATACGCTGAAACTTTACCGTTGACTGAAATTTGAAAGAAA___ATAAGGAAACAAAAGTGGAGATGGTTTAAGTAAATTTCCCGCATTATCCTGCTAATGAGGCGCAGCATCAGCACTGGAAGATCTGGCTCTGGGTCCGCAGAGCTAAGGGACCAGGCAATCTGCTTGACTGCAAACGCTGGATCTCACGTTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24971 WASHC5::NSMCE2 ENSG00000164961.16::ENSG00000156831.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2298 TRUE 4222 TRUE 1596 WASHC5 ENSG00000164961.16 protein_coding - - chr8:125024260-125091819:- chr8:125091615:- chr8:126036502-126104061:- chr8:126103857:- NSMCE2 ENSG00000156831.8 protein_coding + + chr8:125091679-125367120:+ chr8:125357219:+ chr8:126103921-126379362:+ chr8:126369461:+ chr8:125091039,chr8:125091034,chr8:125091113,chr8:125091111,chr8:125091107,chr8:125091103,chr8:125091097,chr8:125091096,chr8:125091094,chr8:125091093,chr8:125091090,chr8:125091085,chr8:125091084,chr8:125091082,chr8:125091081,chr8:125091080,chr8:125091077,chr8:125091076,chr8:125091072,chr8:125091071,chr8:125091069,chr8:125091062,chr8:125091059,chr8:125091058,chr8:125091057,chr8:125091055,chr8:125091054,chr8:125091049,chr8:125091048,chr8:125091047,chr8:125091045,chr8:125091044 chr8:125198172,chr8:125198172,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449 NA NA chr8:126103281,chr8:126103276,chr8:126103355,chr8:126103353,chr8:126103349,chr8:126103345,chr8:126103339,chr8:126103338,chr8:126103336,chr8:126103335,chr8:126103332,chr8:126103327,chr8:126103326,chr8:126103324,chr8:126103323,chr8:126103322,chr8:126103319,chr8:126103318,chr8:126103314,chr8:126103313,chr8:126103311,chr8:126103304,chr8:126103301,chr8:126103300,chr8:126103299,chr8:126103297,chr8:126103296,chr8:126103291,chr8:126103290,chr8:126103289,chr8:126103287,chr8:126103286 chr8:126210414,chr8:126210414,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion high none |Zinc-finger_of_the_MIZ_type_in_Nse_subunit(100%) |zf-Nse(100%),zf-RING_UBOX(100%) 3 20 16 2909 2403 ENST00000318410.12 ENST00000287437.8 upstream upstream duplicates(2),mismatches(2) GTCGGGGTCTGACCCGCTCCAGGTCCGGGACTGCGGATAGAAGAGGACCGCCGCCTTGAGGGAGGGGTGGAAACTGGGTGCCGGCTCCGCGCGCGACCTCCGGCCCTGCGCGTGCGCCGTGGCGCGGCCCGGCTGACAG|GTGGTCTTCAAGCTGACAGAGAAGCTGACGGAACAGAAGGAGTGGATGAAGATATAATTGTGACCCAAAGTCAGACCAACTTCACCTGCCCCATTACAAAG___GAGGAAATGAAGAAGCCAGTGAAAAATAAAGTGTGTGGCCACACCTATGAAGAGGACGCCATTGTTCGCATGATTGAGTCCAGGCAAAAGCGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24975 TCF12::ENSG00000285253 ENSG00000140262.18::ENSG00000285253.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57063823:+ chr15:57210821-57591479:+ chr15:57356021:+ ENSG00000285253 ENSG00000285253.1 protein_coding - + chr15:56652488-56918571:- chr15:56771613:+ chr15:56944686-57210769:- chr15:57063811:+ chr15:57084108 chr15:56734483 NA NA chr15:57376306 chr15:57026681 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 11 13 37 377 33 ENST00000267811.9 unknown downstream upstream duplicates(7),mismappers(1),mismatches(2) TGCTAGAAGTGGCCGAAGATGAATCCCCAGCAACAACGCATGGCCGCTATAGGGACCGACAAGGAGCTGAGCGACCTACTGGACTTCAGTGCG___ATGTTTTCCCCACCTGTTAATAGTGGGAAAACTAGACCAACTACACTGGGAAGCAGTCAATTCAGTGGATCAG___GTATTGATGAAAGAGGAGGTACAACATCTTGGGGAACAAGTGGTCAACCAAGTCCTTCCTATGATTCATCTAGA|AGGGTGTCTTCATTCCTTGGCTCATGGCCCCCTTCCTCCATCTTCAAAGCCAGTAACATCACGTCTCTCTGACCCTTCTGTCACAACATCTCTGACCACAGCCGGGAAAGCCTCTCCACATTTAAGGATTTAGGTGATTTGACTGGACCCACCTTGATAATCCAGGATAATCCCTCTTCTCCAGGTCTGTAACCTAATCATCTACAAAGTCCCTACACCACTCATCCAAGCCgGCATCATCTCTCACCTGTATCTC MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTSGQPSPSYDSSR|rvssflgswppssifkasnitsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 24976 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2299 TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28435110:+ chr3:28390212-28579613:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)|PWWP_domain(84%) Cmc1(27%),TraN(0%)|PWWP(66%) 10 10 31 174 48 ENST00000466830.6 ENST00000383768.7 downstream upstream duplicates(1),mismappers(1) GTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___CCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAA...___ATAAATCCGAAACACATGACAAAGTTG MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQ|vgqeyfaltvlkgnm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24977 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28253765:+ chr3:28283075-28366633:+ chr3:28295256:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28435110:+ chr3:28390212-28579613:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)|PWWP_domain(84%) Cmc1(15%)|PWWP(66%) 1 1 22 23 48 ENST00000418849.2 ENST00000383768.7 downstream upstream duplicates(1) CGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___AGTAAACAGTAGCACCAAACTGTCTTCAGGAGCAA|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___ATAAATCCGAAACACATGACAAAGTTG...GAAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAG___GAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24978 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28435110:+ chr3:28390212-28579613:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)|PWWP_domain(84%) Cmc1(0%)|PWWP(66%) 1 1 20 239 48 ENST00000477739.1 ENST00000383768.7 downstream upstream duplicates(1) CGGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___ATAAAT...AGCCCAGAAGCTCCTGCAGGCAGTCTGTTTGAAAACCACTATGAAGAGGACTATCTTGTAATTGATGGGATAAAATTAAAAGCTGGAGAATGTATTGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24979 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28478814:+ chr3:28390212-28579613:+ chr3:28520305:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)|PWWP_domain(22%) Cmc1(27%),TraN(0%)|PWWP(0%) 0 2 17 174 27 ENST00000466830.6 ENST00000419130.5 downstream upstream none AAAGGCGCAGGCGCAACGGGCGGCGGAA___...CAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|CCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAAGCATGTCTACTCTATGGATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCAAAACaACAAG___ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___AAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAG___GAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGG___TTGTCTGTGAG MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQ|aRKV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24980 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)| Cmc1(27%),TraN(0%)| 0 2 9 174 50 ENST00000466830.6 ENST00000383768.7 downstream upstream none CCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___AAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAG___GAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGG___TTGTCTGTGAGACGGAAGTTTTAC MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQ|dKSETHDKVAALVKKRKQTSKNNIEKKKPKFRKRKRKAILKCSFENVYSDDALSKENRVVCETEVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24981 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4223 TRUE 1597 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28492127:+ chr3:28390212-28579613:+ chr3:28533618:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)| 1 1 6 239 50 ENST00000477739.1 ENST00000383768.7 downstream upstream none GGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGA?CGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___TTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24982 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4224 TRUE 1598 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28435110:+ chr3:28390669-29809028:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(26%)| Cmc1(27%),TraN(0%)|PWWP(66%),RRM_1(100%) 10 8 28 174 48 ENST00000466830.6 ENST00000635992.1 downstream upstream duplicates(1),mismappers(1) GTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTA...CGCTCGACCCCGCAG___ACCAGCATCTCAGACATGTCGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCCAAAGAGAGGTGTTCTGAACAAGTTCAAG|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___CCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAA LDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQ|vgqeyfaltvlkgnm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24983 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4224 TRUE 1598 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28253765:+ chr3:28283075-28366633:+ chr3:28295256:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28435110:+ chr3:28390669-29809028:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(15%)|PWWP(66%),RRM_1(100%) 1 0 20 23 48 ENST00000418849.2 ENST00000635992.1 downstream upstream duplicates(1) CGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG___AGTAAACAGTAGCACCAAACTGTCTTCAGGAGCAA|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___ATAAATCCGAAACACATGACAAAGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24984 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4224 TRUE 1598 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28435110:+ chr3:28390669-29809028:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)|PWWP(66%),RRM_1(100%) 1 0 18 239 48 ENST00000477739.1 ENST00000635992.1 downstream upstream duplicates(1) CGGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGAACGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|TTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAG___ATAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24985 CMC1::ENSG00000283563 ENSG00000187118.14::ENSG00000283563.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4224 TRUE 1598 CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28241812:+ chr3:28283075-28366633:+ chr3:28283303:+ ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28492127:+ chr3:28390669-29809028:+ chr3:28533618:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion/read-through medium none Cytochrome_c_oxidase_biogenesis_protein_Cmc1_like(0%)| Cmc1(0%)|RRM_1(100%) 1 1 6 239 50 ENST00000477739.1 ENST00000635992.1 downstream upstream none GGCGGAAGTAGGAGCCTGGGAAGGAAGAGGGA?CGGGTCCTGGCGGTGCTTTGCAAAGGGCCCGTGTTTCTGTTGCGGGAAGCTCCCGGGGGTCGCACGTGCGTCCGAGCCCAAGCCCCTCCCCTCCACTCCCCTTCCTGCGTGCCCCGGAGCCGCCAAGCGGCTACGTTCTTCTCGGCCCGCCGAGATGGCGCTCGACCCCGCAG|ATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGG___TTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24986 HSD17B4::TNFAIP8 ENSG00000133835.18::ENSG00000145779.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2300 FALSE NA FALSE NA HSD17B4 ENSG00000133835.18 protein_coding + + chr5:119452465-119637199:+ chr5:119527219:+ chr5:118788160-118972894:+ chr5:118862914:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ chr5:119527522 chr5:119349323 NA NA chr5:118863217 chr5:118685018 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none MaoC_like_domain(90%),short_chain_dehydrogenase(100%)|Domain_of_unknown_function_(DUF758)_(100%) KR(100%),MaoC_dehydratas(81%),adh_short(100%),adh_short_C2(100%)|DUF758(100%) 7 11 25 831 372 ENST00000646058.1 ENST00000274456.6 downstream upstream duplicates(5) GGTGGAAAACGGACATCAGACAAAGTCAAG___GTAGCTGTAGCCATACCTAATAGACCTCCTGATGCTGTACTTACAGATACCACCTCTCTTAATCAG___GCTGCT...CTTACACATTGATCCTAACTTTGCTAGTCTAGCAG___GTTTTGACAAGCCCATATTACATGGATTATGTACATTTGGATTTTCTGCCAGGCGTGTGTTACAGCAGTTTGCAGATAATGATGTGTCAAGATTCAAGGCAgTTAAG___GCTCGTTTTGCAAAACCAGTATATCCAGGACAAACTCTACAAACTGAGATGTGGAAGGAAGGAAACAGAATTCATTTTCAAACCAAG|TGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAGATGAGCTAGCATTGATGGAGAAA LHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAvKARFAKPVYPGQTLQTEMWKEGNRIHFQTK|wpqmslipktwpfrhkrrswvkwcpnpsppp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Stomach adenocarcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma STOMACH,CERVIX exact 118850741|118850741,118792063|118788328 FALSE|FALSE,FALSE|FALSE 118728511|118727060,118728511|118728511 TRUE|FALSE,TRUE|TRUE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24988 CNOT9::RUFY4 ENSG00000144580.15::ENSG00000188282.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2302 FALSE NA FALSE NA CNOT9 ENSG00000144580.15 protein_coding + + chr2:218568580-218597080:+ chr2:218568978:+ chr2:219433303-219461803:+ chr2:219433701:+ RUFY4 ENSG00000188282.13 protein_coding + + chr2:218034960-218090584:+ chr2:218083110:+ chr2:218899683-218955307:+ chr2:218947833:+ chr2:218572515 chr2:218082638 NA NA chr2:219437238 chr2:218947361 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 12 17 9 614 32 ENST00000273064.11 ENST00000697321.1 downstream upstream duplicates(4),mismatches(4) GCCGGAGTCGGATGGCGGCTACGGCGGCTCATTaTTTTCCGCTGCAGGGGTGCTGAAGGGGGGACGCGGGTCGGACGCGTCCGGCTGTGGAAGAGAGCGGCGGCCGCTCACAACATGCACAGCCTGGCGACGGCTGCG|GTGTCAGGAAGAGAGAGCCGAGCTGCAGGCACAGCTGGAGCAGAAGCAACAGGAGGCTGAGAGGAGGGATGCCATGTACCAGGAGGAGCTTGGAGGGCAGCGGGACTTGGTCCAGGCCATGAAGAGGCGGGTGTTGGAACTGATCCA___AGAGAAGGACCGCCTGTGGCAGAGGCTCCAGCATCTCTCTTCCATGGCTCCCGAGTGCTGTGTGGCCTGTAGCAAGATCTTTGGCCGATTTTCTCGGCGGTATCCATGCAG MHSLATAA|vsgresraagtagaeatgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24996 SIPA1L3::DLG2 ENSG00000105738.11::ENSG00000150672.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ DLG2 ENSG00000150672.19 protein_coding - + chr11:83455012-85628335:- chr11:84607022:+ chr11:83166055-85339379:- chr11:84318065:+ chr19:37947968,chr19:37947969 chr11:84606350,chr11:84606348 NA NA chr19:38438608,chr19:38438609 chr11:84317393,chr11:84317391 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 2 2 24 73 2 ENST00000222345.11 unknown downstream upstream duplicates(1) GCGAAACTACAGTTCCCAGGAGGACTCGCGCGAAGCGGCTTGGAAGTGGGCAGCCTGGAAGTCACTCGGGCCACCGGAGCTGGCGGCGTCTCCAGCGAGCGGCGCGGAGCTGGACGCCGCGATCGTGGGGCCCGCGAGGCGGGCAGCCGGGGCGTCCAG|GATCCAAGGTCATCAAGAGCAGGGGGCCATAGAGCTTAATTTTTTTTAGTGTTATTCAAGCATCTAAAACAGCCAG...AGGCACTCTTCACACACTTATCTGCTGAAGCAGTGACTCATGAAATTCACAACGTGCTAAGATTCG___ATATCTAGAGATGCTAGAAGCTCTACTATCTCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24998 CCS::PACS1 ENSG00000173992.9::ENSG00000175115.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2305 TRUE 4227 TRUE 1599 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593714:+ chr11:66360624-66373490:+ chr11:66361185:+ PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66227504:+ chr11:65837743-66012215:+ chr11:65994975:+ chr11:66599208,chr11:66599205 chr11:66221761,chr11:66221755 NA NA chr11:66366679,chr11:66366676 chr11:65989232,chr11:65989226 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Heavy-metal-associated_domain(39%)|PACS-1_cytosolic_sorting_protein(100%) HMA(1%)|Pacs-1(100%) 2 6 16 255 165 ENST00000533244.6 ENST00000320580.9 downstream upstream duplicates(1),mismatches(1) CCGGAGGAGTTCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG___TTGGAGTTCGCGGTGCAGATGACCTGTCAGAGCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAG|ATGGAATTGGCTGCTCTAGAAAAAATTAAATCTACTTGGATTAAAAACCAAGATGACAGCTTGACTGAAACAGACACTCTG___GAAATCACTGACCAGGACATGTTTGGAGATGCCAGCACGAGTCTGGTTGTGCCGGAGAAAGTCAAAACTCCCATGAAGTCCAGTAAAACGG...CCCCTGAAGGAGCGGCAGCTCTCCAAGCCCCTAAGTGAGAGGACCAACAGTTCCGACAGCGAGCGCTCCCCAGATCTGGGCCACAGCACGCAG___ATTCCAAGAAAGGTGGTGTATGACCAGCTCAATCAGATCCTGG MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVA|dgigcsrkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 24999 CCS::PACS1 ENSG00000173992.9::ENSG00000175115.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4227 TRUE 1599 CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593300:+ chr11:66360624-66373490:+ chr11:66360771:+ PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66227504:+ chr11:65837743-66012215:+ chr11:65994975:+ chr11:66599208,chr11:66599205 chr11:66221761,chr11:66221755 NA NA chr11:66366679,chr11:66366676 chr11:65989232,chr11:65989226 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |PACS-1_cytosolic_sorting_protein(100%) |Pacs-1(100%) 0 4 5 441 165 ENST00000533244.6 ENST00000320580.9 downstream upstream none CCGCGACGCCGCGCTGGTTGGTGCTCCTGCGCCGGAGGAGTTCTGCGTCTCGGGGTGGTGACTGGGTCCAGAATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACG|ATGGAATTGGCTGCTCTAGAAAAAATTAAATCTACTTGGATTAAAAACCAAGATGACAGCTTGACTGAAACAGACACTCTG___GAAATCACTGACCAGGACATGTTTGGAGATGCCAGCACGAGTCTGGTTGTGCCGGAGAAAGTCAAAACTCCCATGAAGTCCAGTAAAACGGATCTCCAGGGCTCTGCCTCCCCCAG___CAAAGTGGAGGGGGTGCACACACCCCGGCAGAAGAGGAGCAC MASDSGNQGTLCT|MELAALEKIKSTWIKNQDDSLTETDTLEITDQDMFGDASTSLVVPEKVKTPMKSSKTDLQGSASPSKVEGVHTPRQKRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25001 TLK1::MYLK4 ENSG00000198586.14::ENSG00000145949.12 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TLK1 ENSG00000198586.14 protein_coding - - chr2:170990823-171231314:- chr2:171160290:- chr2:171847333-172087824:- chr2:172016800:- MYLK4 ENSG00000145949.12 protein_coding - + chr6:2663629-2770330:- chr6:2764650:+ chr6:2663863-2770564:- chr6:2764884:+ chr2:171138553,chr2:171138571,chr2:171138560 chr6:2695259,chr6:2695254,chr6:2695252 NA NA chr2:171995063,chr2:171995081,chr2:171995070 chr6:2695493,chr6:2695488,chr6:2695486 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 4 4 14 217 36 ENST00000431350.7 unknown upstream upstream duplicates(1),mismatches(4) CCCCCATCCCCTTGACTCTCCCCTCCCAGCCCTCGCTCTCTCGCTCGCCCTCAGCGCGGCCCCCGCCATGACGGAGGCGGGTGCCGGTGCCGTTGCCGCCGCTGCCGTCGCAGGGGGGGAGTCGGGTTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCAGCTCTCCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG|GACGTAATTGCACACGGGCGCCTCCCATCATTTGGTTGCTAAGGAGACAGAAGGCTGGTGTTTCCGATTTGCCACTATTACACAGCGGCCCGCGAGAAGCATCTCTTGGCTCGAAGCGCGCTGTAGGTGAACCGCCCTTGACTTAAACGCCAACACATCTAAAAGGGGGCGAGGGACGCTTTATTTTCATTTCCCTGACCACTACTGAGGTGAGCATTTCTTTCACTCGCGTACTTGTTTGTATTTTTTCTGCTGTTCACGTCCAATAGAACACTGG MSVQSSSGSLEGPPSWSQLSTSPTPGSAAAARSLLNHTPPSGRPRE|grnctrappiiwllrrqkagvsdlpllhsgpreaslgskravgepplt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase tousled-like 1 Other TLK Q9UKI8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25002 SMCHD1::XPC ENSG00000101596.17::ENSG00000154767.15 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2306 FALSE NA FALSE NA SMCHD1 ENSG00000101596.17 protein_coding + + chr18:2655726-2805017:+ chr18:2796521:+ chr18:2655725-2805015:+ chr18:2796519:+ XPC ENSG00000154767.15 protein_coding - - chr3:14145147-14178621:- chr3:14173062:- chr3:14186647-14220121:- chr3:14214562:- chr18:2797900,chr18:2797898,chr18:2797896 chr3:14174528,chr3:14174530,chr3:14174530 NA NA chr18:2797898,chr18:2797896,chr18:2797894 chr3:14216028,chr3:14216030,chr3:14216030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),SMC_proteins_Flexible_Hinge_Domain(100%)|Rad4_beta-hairpin_domain_1(100%),Rad4_beta-hairpin_domain_2(100%),Rad4_beta-hairpin_domain_3(100%),Rad4_transglutaminase-like_domain(100%) HATPase_c_3(100%),SMC_hinge(100%)|BHD_1(100%),BHD_2(100%),BHD_3(100%),Rad4(100%),TMEM43(100%) 12 3 7 325 343 ENST00000320876.11 ENST00000285021.12 downstream downstream duplicates(1),mismatches(2) CGGGGAATGGTATTTGGAGCTCCAGTTCCAAAACAGTGTCTGATCTTAGGGGAACAAATAG___ATCTTCTTCAGCAGTATCGTTCTGCTGTGTGCAAACTAGACAGTGTGAATAAGGATCTTAACAGTCAATTAGAGTACCTTCGCACTCCGGATATGAGGAAGAAAAAGCAAGAACTTGATGAACATGAGAAAAATCTCAAACTAATAGAGGAAAAACTAG___GTATGACTCCCATACGTAAGTGTAATGACTCATTGCGTCATTCACCAAAGGTTGAGACGACAGATTGTCCAGTTCCTCCTAAAAGAATGAGACGAGAAGCTACAAGACAAAATAG|ATGCCTTTGAAGATGAGAAACCCCCAAAGAAGAGCCTTCTCTCCAAAGTTTCACAAGGAAAGAGGAAAAGAGGCTGCAGTCATCCTGGGGGTTCAGCAGATGGTCCAGCAAAAAAGAAAGTGGCCAAGGTGACTGTTAAATCTGAAAACCTCAAGGTTATAAAGGATGAAGCCCTCAGCGATGGGGATGACCTCAG___GGACTTTCCAAGTGACCTCAAGAAGGCACACCATCTGAAGAGAGGGGCTACCATGAATGAAGA RGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLDSVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETTDCPVPPKRMRREATRQNr|cl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE xeroderma pigmentosum, complementation group C 1 skin basal cell, skin squamous cell, melanoma xeroderma pigmentosum (C) epithelial TSG missense, nonsense, frameshift, splice_site 25003 KIAA1958::LINGO2 ENSG00000165185.15::ENSG00000174482.11 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2307 FALSE NA FALSE NA KIAA1958 ENSG00000165185.15 protein_coding + + chr9:112486827-112669397:+ chr9:112487118:+ chr9:115249107-115431677:+ chr9:115249398:+ LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:28670280:- chr9:27937615-29213599:- chr9:28670278:- chr9:112521209,chr9:112521203 chr9:28675105,chr9:28675111 NA NA chr9:115283489,chr9:115283483 chr9:28675103,chr9:28675109 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |Immunoglobulin_I-set_domain(100%),Leucine_rich_repeat(100%) |I-set(100%),Ig_2(100%),Ig_3(100%),LRR_5(100%),LRR_6(100%),LRR_8(100%),ig(100%) 1 11 8 65 25 ENST00000337530.11 ENST00000698399.1 downstream downstream duplicates(4),mismatches(1) TCCTCGGTCCGCCGCCCGCCGGGCGCCTTCCCCGCTCCACTTACCTTcGGTGCCCGGCCCTCTGGCCGCTCTCCTCCCGCCCTCGCGCCCCTTCGGCCCGTCCCGTCCAGCCCGGGCTGCCCGGCTCTCGCAGGCCCCCCCGCGCCGACCGCGTTCCTATGGACAGACGCACAGACACCTGCAG|GAATTGATGAGTGCCATCAGAAAGCTGTATCATGAGCTGCCTGCACTTCTAAAGTGTCCAGTGGATTTTTAATCACATGAG___CCTGGAAATAGGGTTATGAGAAGAAGCTCAGAGCAGAGCACCGAAAGTGGCCACTACCAGCATGAAGAGCCCAACAATTCAAACTG___GTGAAGTGAGAAAAACAGAATGCAGCTTTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25004 FANCC::PTCH1 ENSG00000158169.14::ENSG00000185920.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2308 TRUE 4228 TRUE 1600 FANCC ENSG00000158169.14 protein_coding - - chr9:95099054-95426796:- chr9:95317526:- chr9:97861336-98189078:- chr9:98079808:- PTCH1 ENSG00000185920.19 protein_coding - - chr9:95442980-95517057:- chr9:95479147:- chr9:98205262-98279339:- chr9:98241429:- chr9:95278432,chr9:95278437 chr9:95479554,chr9:95479556 NA NA chr9:98040714,chr9:98040719 chr9:98241836,chr9:98241838 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Patched_family(100%) |Patched(100%),Sterol-sensing(100%) 4 6 7 255 242 ENST00000289081.8 ENST00000437951.6 upstream downstream mismatches(1) GTGTGCGCGCGCGCGGCTCCACTGCCGGGCGACCGCGGGAAAATTCCAAAAAAACTCAAAAAGCCAATACGAGGCAAAGCCAAATTTTCAAGCCACAGATCCCGGGCGGTGGCTTCCTTTCCGCCACTGCCCAAACTGCTGAAGCAGCTCCCGCGAGGACCACCCG|CGCCCATGCCCTGCAGACCATGTTCCAGTTAATGACTCCCAAGCAAATGTACGAGCACTTCAAGGGGTACGAGTATGTCTCACACATCAACTGGAACGAGGACAAAGCGGCAGCCATCCTGGAGGCCTGGCAGAGGACATATGTGGAG___GTGGTTCATCAGAGTGTCGCACAGAACTCCACTCAAAAGGTGCTTTCCTTCACCACCACGACCCTGGACG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group C 1 AML, leukaemia Fanconi anaemia C leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE Homolog of Drosophila Patched gene 1 Yes skin basal cell, medulloblastoma skin basal cell, medulloblastoma nevoid basal cell carcinoma syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift, splice_site 25005 FANCC::PTCH1 ENSG00000158169.14::ENSG00000185920.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4228 TRUE 1600 FANCC ENSG00000158169.14 protein_coding - - chr9:95099054-95426796:- chr9:95316832:- chr9:97861336-98189078:- chr9:98079114:- PTCH1 ENSG00000185920.19 protein_coding - - chr9:95442980-95517057:- chr9:95479147:- chr9:98205262-98279339:- chr9:98241429:- chr9:95278432,chr9:95278437 chr9:95479554,chr9:95479556 NA NA chr9:98040714,chr9:98040719 chr9:98241836,chr9:98241838 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Patched_family(100%) |Patched(100%),Sterol-sensing(100%) 0 5 7 80 242 ENST00000650176.1 ENST00000437951.6 upstream downstream duplicates(1),mismatches(1) CCAGTGTCTTCCCTCCATTCTTTTTGTGGACGCCAGGCCATATCTTCAAAGCCCGTGAGAGATTTTTCAG|CGCCCATGCCCTGCAGACCATGTTCCAGTTAATGACTCCCAAGCAAATGTACGAGCACTTCAAGGGGTACGAGTATGTCTCACACATCAACTGGAACGAGGACAAAGCGGCAGCCATCCTGGAGGCCTGGCAGAGGACATATGTGGAG___GTGGTTCATCAGAGTGTCGCACAGAACTCCACTCAAAAGGTGCTTTCCTTCACCACCACGACCCTGGACGACATCCTGAAATCCTTCTCTGACGTCAGTGTCATCCGCGTGGCCAGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group C 1 AML, leukaemia Fanconi anaemia C leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE Homolog of Drosophila Patched gene 1 Yes skin basal cell, medulloblastoma skin basal cell, medulloblastoma nevoid basal cell carcinoma syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift, splice_site 25011 LINC01667::LINC02987 ENSG00000280081.4::ENSG00000267575.9 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4229 TRUE 1601 LINC01667 ENSG00000280081.4 transcribed_processed_pseudogene - - chr21:9781910-9838011:- chr21:9837764:- chr4_gl000193_random:49224-105325:- chr4_gl000193_random:105078:- LINC02987 ENSG00000267575.9 lncRNA + + chr19:27793431-27984984:+ chr19:27956202:+ chr19:28284339-28475892:+ chr19:28447110:+ chr21:9819096,chr21:9819106 chr19:27937876,chr19:27937868 NA NA chr4_gl000193_random:86410,chr4_gl000193_random:86420 chr19:28428784,chr19:28428776 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 0 0 116 150 ENST00000651050.1 ENST00000592806.1 upstream upstream duplicates(1),multimappers(2) CACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGG|ATAGAGCTTTGGAGCCAAACCCTTCTGATGATCCAAGGGCAAGCACAGTCTTCTTGCAAAAATCTCAAACAGATGGTGAG...AGTACAGCTCGTGTTCAACCATATACCTAGATGACAGCACAGCCAGCCAGCCTCATCTTACAATCATAGTAAAATC___GAATGAGCTTGAAAGACAGTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25012 LINC01667::LINC02987 ENSG00000280081.4::ENSG00000267575.9 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4229 TRUE 1601 LINC01667 ENSG00000280081.4 transcribed_processed_pseudogene - - chr21:9781910-9838011:- chr21:9837764:- chr4_gl000193_random:49224-105325:- chr4_gl000193_random:105078:- LINC02987 ENSG00000267575.9 lncRNA + + chr19:27793431-27984984:+ chr19:27963266:+ chr19:28284339-28475892:+ chr19:28454174:+ chr21:9819096,chr21:9819106 chr19:27937876,chr19:27937868 NA NA chr4_gl000193_random:86410,chr4_gl000193_random:86420 chr19:28428784,chr19:28428776 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 0 0 116 226 ENST00000651050.1 ENST00000592806.1 upstream upstream multimappers(5) AAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGG|GTATCTACTAAGCATTTTACTAAAAAGTACAGCTCGTGTTCAACCATATACCTAGATGACAGCACAGCCAGCCAGCCTCATCTTACAATCATAGTAAAATC___TGTGGCCTTAGCAATATATTATCACATGAAGAAAAG___GATTGCAGTAGAAACCAGCCGAGACAAAAGATGCC...CACATACAGGGGGAAGCCCACAGGGAGAAGATGGCTGTCTGCAATTCAGAAGAGCAGCCTCAGAAGAAACCAACCTGCCAACATCTTTATCTGCGACTTGCAGCCTCCAAAACTGTGAGAAAATTAATTTGTTGTTTAAGCATCCAGAATGTGAGACTTTGTTACAGCAGCCCTAGCAAATTAATACAAGCAaCAAACAACCAGATGTCCCGCTTGAAAACCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25021 LINC01667::ENSG00000267623 ENSG00000280081.4::ENSG00000267623.4 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4230 TRUE 1602 LINC01667 ENSG00000280081.4 transcribed_processed_pseudogene - - chr21:9781910-9838011:- chr21:9837764:- chr4_gl000193_random:49224-105325:- chr4_gl000193_random:105078:- ENSG00000267623 ENSG00000267623.4 transcribed_unprocessed_pseudogene + + chr19:27936761-27984743:+ chr19:27956202:+ chr19:28427669-28475651:+ chr19:28447110:+ chr21:9819096,chr21:9819106 chr19:27937876,chr19:27937868 NA NA chr4_gl000193_random:86410,chr4_gl000193_random:86420 chr19:28428784,chr19:28428776 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 0 0 116 150 ENST00000651050.1 ENST00000590507.1 upstream upstream duplicates(1),multimappers(1) CGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGG|ATAGAGCTTTGGAGCCAAACCCTTCTGATGATCCAAGGGCAAGCACAGTCTTCTTGCAA...AGTACAGCTCGTGTTCAACCATATACCTAGATGACAGCACAGCCAGCCAGCCTCATCTTACAATCATAGTAAAATC___GAATGAGCTTGAAAGACAGTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25022 LINC01667::ENSG00000267623 ENSG00000280081.4::ENSG00000267623.4 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4230 TRUE 1602 LINC01667 ENSG00000280081.4 transcribed_processed_pseudogene - - chr21:9781910-9838011:- chr21:9837764:- chr4_gl000193_random:49224-105325:- chr4_gl000193_random:105078:- ENSG00000267623 ENSG00000267623.4 transcribed_unprocessed_pseudogene + + chr19:27936761-27984743:+ chr19:27963266:+ chr19:28427669-28475651:+ chr19:28454174:+ chr21:9819096,chr21:9819106 chr19:27937876,chr19:27937868 NA NA chr4_gl000193_random:86410,chr4_gl000193_random:86420 chr19:28428784,chr19:28428776 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 0 0 116 226 ENST00000651050.1 ENST00000590507.1 upstream upstream multimappers(5) AAGCAGCACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGG|GTATCTACTAAGCATTTTACTAAAAAGTACAGCTCGTGTTCAACCATATACCTAGATGACAGCACAGCCAGCCAGCCTCATCTTACAATCATAGTAAAATC___TGTGGCCTTAGCAATATATTATCACATGAAGAAAAG___GATTGCAGTAGAAACCAGCCGAGACAAAAGATGCC...CACATACAGGGGGAAGCCCACAGGGAGAAGATGGCTGTCTGCAATTCAGAAGAGCAGCCTCAGAAGAAACCAACCTGCCAACATCTTTATCTGCGACTTGCAGCCTCCAAAACTGTGAGAAAATTAATTTGTTGTTTAAGCATCCAGAATGTGAGACTTTGTTACAGCAGCCCTAGCAAATTAATACAAGCAaCAAACAACCAGATGTCCCGCTTGAAAACCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25028 SMYD3::ENSG00000232347 ENSG00000185420.19::ENSG00000232347.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246327201:- chr1:245912644-246670614:- chr1:246490503:- ENSG00000232347 ENSG00000232347.1 lncRNA - - chr1:247210691-247241823:- chr1:247212392:- chr1:247373993-247405125:- chr1:247375694:- chr1:246302602,chr1:246302604 chr1:247234477,chr1:247234479 NA NA chr1:246465904,chr1:246465906 chr1:247397779,chr1:247397781 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none MYND_finger(100%),SET_domain(79%)| SET(30%),zf-MYND(100%)| 1 3 4 328 17 ENST00000490107.6 ENST00000428687.1 upstream downstream duplicates(1) CACCTTCAGAATCAGAGAAGCTTTACTCATTTTATGATCTGGAGTCAA___ATATTAACAAACTGACTGAAGATAAGAAAGAGGGCCTCAGGCAACTCGTAATGACATTTCAACATTTCATGAGAGAAGAAATACAGGATGCCTCTCAGCTGCCACCTGCCTTTGACCTTTTTGAAGCCTTTGCAAAA|AATCCTGTTATCTCTATGATAATAAGCACACATTAACTTGCTGGGGAACGAGATACCACACGGAGAAGAACGAAGGTGCCCCAGTTGACAGGCAACTCACC...CTGCAATCAGCATCTGCCCACACATGTCTGAAGGATCCCAGCTGAGACCAAAAGAATTGCCCAGCTGAGTTTAGCTTAAATTGCTGACCAGCCGAATCATGAGCTAGTAAGTTTCGG...AATCAGTTTCACCTGTTACTTTTAATGTTTAAAAGGTGGCTACTAGGAAATTTAAAATTCACACGTGGCTTACATTTTATTTCTTAAAGGATTGCCTCCCT PSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAK|npvismiisth* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25035 LINC01667::ENSG00000290593 ENSG00000280081.4::ENSG00000290593.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4232 FALSE NA LINC01667 ENSG00000280081.4 transcribed_processed_pseudogene - - chr21:9781910-9838011:- chr21:9837764:- chr4_gl000193_random:49224-105325:- chr4_gl000193_random:105078:- ENSG00000290593 ENSG00000290593.1 lncRNA + + chr19:27902595-27956684:+ chr19:27956202:+ chr19:28393503-28447592:+ chr19:28447110:+ chr21:9819096,chr21:9819106 chr19:27937876,chr19:27937868 NA NA chr4_gl000193_random:86410,chr4_gl000193_random:86420 chr19:28428784,chr19:28428776 NA NA sense sense unknown exon/splice-site exon/splice-site translocation low none none none 0 0 0 116 150 ENST00000651050.1 ENST00000586473.2 upstream upstream multimappers(1) CACGGGATCCCAGCCTCAGGCCTGCACGGACGGTGTTGGTTGGG|ATAGAGCTTTGGAGCCAAACCCTTCTGATGATCCAAGGGCAAGCACAGTCTTCTTGCAAAAATCTCAAACAGATGGTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25037 UBE2H::KLHDC10 ENSG00000186591.13::ENSG00000128607.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA UBE2H ENSG00000186591.13 protein_coding - - chr7:129830732-129952960:- chr7:129857511:- chr7:129470572-129592800:- chr7:129497351:- KLHDC10 ENSG00000128607.14 protein_coding + - chr7:130070534-130135705:+ chr7:130107230:- chr7:129710374-129775545:+ chr7:129747070:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Ubiquitin-conjugating_enzyme(61%)| UQ_con(51%)| 4 1 0 300 4 ENST00000355621.8 unknown upstream downstream multimappers(1) TGAATTTGTAGTGAAGTTTTATGGACCACAAGGAA___CACCATATGAAGGCGGAGTATGGAAAGTTAGAGTGGACCTACCTGATAAATACCCTTTCAAATCTCCATCTATAG___GATTCATGAATAAAATTTTCCATCCCAACATTGATGAAGC___GTCAGGAACTGTGTGTCTAGATGTAATTAATCAAACTTGGACAGCTCTCTATG|AACAAGGTTGAATAGTGGAGATGACAGTGGACATCTTTGTCTCGTTTTTTTTACTTTAATGAGGACACTGGTAAGGTTATGCCGTTATGTATTATGTTTGCTATTGGTTTCTTATCAATA EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY|eqg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25038 BIRC6::SLC30A6 ENSG00000115760.16::ENSG00000152683.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4233 TRUE 1603 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32416163:+ chr2:32582091-32844638:+ chr2:32641231:+ SLC30A6 ENSG00000152683.14 protein_coding + + chr2:32165841-32224379:+ chr2:32206886:+ chr2:32390910-32449448:+ chr2:32431955:+ chr2:32421699,chr2:32421697 chr2:32204625,chr2:32204619 NA NA chr2:32646767,chr2:32646765 chr2:32429694,chr2:32429688 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Inhibitor_of_Apoptosis_domain(100%)| BIR(100%)| 0 2 2 80 164 ENST00000700518.1 ENST00000435660.5 downstream upstream none GTGGAGCCTCCCAAAAAGGAGGGCACTGAGGAACAGGACACATTTGTTTCTGTGATTTACTGTTCTGGCACAGACAGGCTGTGTGCATGCACCAAAG|ACAACACCACCCCATGTTATTGGTCAGTTGGACAAACTCATCAGAGAG___GCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAG VEPPKKEGTEEQDTFVSVIYCSGTDRLCACTK|dnttpcywsvgqthqrgwisacknstrcq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Uterine Carcinosarcoma UTERUS,UTERUS no_match 32582554,32774548|32774548 FALSE,FALSE|FALSE 32396356,32409342|32417405 FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 25039 BIRC6::SLC30A6 ENSG00000115760.16::ENSG00000152683.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4233 TRUE 1603 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32416163:+ chr2:32582091-32844638:+ chr2:32641231:+ SLC30A6 ENSG00000152683.14 protein_coding + + chr2:32165841-32224379:+ chr2:32220213:+ chr2:32390910-32449448:+ chr2:32445282:+ chr2:32421699,chr2:32421697 chr2:32204625,chr2:32204619 NA NA chr2:32646767,chr2:32646765 chr2:32429694,chr2:32429688 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Inhibitor_of_Apoptosis_domain(100%)| BIR(100%)| 1 0 2 80 212 ENST00000700518.1 ENST00000282587.9 downstream upstream none GTGGAGCCTCCCAAAAAGGAGGGCACTGAGGAACAGGACACATTTGTTTCTGTGATTTACTGTTCTGGCACAGACAGGCTGTGTGCATGCACCAAAG|GCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACgCTCTAGTGTCTACTCTAACTGTTCAAAT...CCTAAACTTTTCAGATCATCACGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTTACATCAACTCCAGCTAAACCTAGTAGTCCAC VEPPKKEGTEEQDTFVSVIYCSGTDRLCACTK|gwisacknstrcq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Uterine Carcinosarcoma UTERUS,UTERUS no_match 32582554,32774548|32774548 FALSE,FALSE|FALSE 32396356,32409342|32417405 FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 25042 RBMS3::ENSG00000258526 ENSG00000144642.22::ENSG00000258526.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4234 TRUE 1604 RBMS3 ENSG00000144642.22 protein_coding + + chr3:28574791-30010391:+ chr3:28576496:+ chr3:28616282-30051882:+ chr3:28617987:+ ENSG00000258526 ENSG00000258526.8 lncRNA + + chr14:39432599-40390547:+ chr14:39991060:+ chr14:39901803-40859751:+ chr14:40460264:+ chr3:28586935,chr3:28586931 chr14:39662470,chr14:39662463 NA NA chr3:28628426,chr3:28628422 chr14:40131674,chr14:40131667 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 0 1 1 55 3 ENST00000636680.2 ENST00000651829.1 downstream upstream mismappers(1) GAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCA...CCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG|AcGGAAGCACTGCATTAGCGAGTCCTGAAGATCCTTTCCAGCTCTTTGATTATATGACATTCTGACTAGCACAAAGAGGCACACCTGCAATCCTACTGAGAGTTCCATGGATCATTAATGATTATTCATGGTGAAGGAAGCAGAGGTAATGTAGACTCTGAAAGCTGATACTTCTCATTGTAGAAGTACACTCTTGTGTTACAGgGTTTTTG ETRPNGEKGESK|tealh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25043 RBMS3::ENSG00000258526 ENSG00000144642.22::ENSG00000258526.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4234 TRUE 1604 RBMS3 ENSG00000144642.22 protein_coding + + chr3:28574791-30010391:+ chr3:28576496:+ chr3:28616282-30051882:+ chr3:28617987:+ ENSG00000258526 ENSG00000258526.8 lncRNA + + chr14:39432599-40390547:+ chr14:40318436:+ chr14:39901803-40859751:+ chr14:40787640:+ chr3:28586935,chr3:28586931 chr14:39662470,chr14:39662463 NA NA chr3:28628426,chr3:28628422 chr14:40131674,chr14:40131667 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 1 0 0 55 36 ENST00000636680.2 ENST00000652126.1 downstream upstream low_entropy(1) GCCCTCCGCACGCTCCTCTCTTTCTAGTCCTCGCCGCCACCACCTCGCACAG___TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGA...GCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG|TTTCCCTTGGAATCCAGTCACCATGCTGTGAGGAAATCAAAGCCAAAGGGAAGTTTCACATGAAGAGCAATCAAGTCGTTTAGCCCTCAGCCTGAT LAQDELPGESAGAEDSDDPETRPNGEKGESK|fplesshhavrkskpkgsft* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25050 TATDN1::MTSS1 ENSG00000147687.19::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2311 TRUE 4235 TRUE 1605 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585161:- chr8:125563025-125740714:- chr8:125597402:- chr8:124528334 chr8:124589193 NA NA chr8:125540575 chr8:125601434 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none TatD_related_DNase(0%)|IRSp53/MIM_homology_domain(49%),WH2_motif(100%) Complex1_LYR(100%),TatD_DNase(0%)|IMD(11%),WH2(100%) 0 43 0 5006 214 ENST00000522927.5 ENST00000518547.6 upstream downstream duplicates(4),mismatches(12) GAGGTCCTCCATGCGCAGTCATGAGTCGCTTCAAGTTTATCG|AATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG___GGAGAGGTGATATCCAGCCTCAGTTGGACAGTGCTCTCCAAGATGTCAATGATAAGTATCTCTTATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTGATTGAAGAACGTGGCCGATTCTGTACCTTCATCTCTATGCTGCGGCCAGTGATT___GAAGAAGAAATCTCAATGCTAGGGGAAATAACCCACCTTCAGACCATCTCGGAAGATCTAAAAAGCCTGACCATGGACCCTCACAAACTGCCCTCCTCAAGTGAACAG___GTGATTCTGGACTTGAAAGGTTCTGATTACAGCTGGTCGTATCAGACGC MSRFKFI|eYKKARQEIKKKSSDTLKLQKKAKKGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQVILDLKGSDYSWSYQT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25051 TATDN1::MTSS1 ENSG00000147687.19::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4235 TRUE 1605 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585161:- chr8:125563025-125740714:- chr8:125597402:- chr8:124528334 chr8:124589193 NA NA chr8:125540575 chr8:125601434 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication low none TatD_related_DNase(0%)|IRSp53/MIM_homology_domain(49%),WH2_motif(100%) Complex1_LYR(100%),TatD_DNase(0%)|IMD(11%),WH2(100%) 0 5 0 474 214 ENST00000519232.5 ENST00000518547.6 upstream downstream duplicates(1),mismatches(2) CTTGTCCCGGGCGTCGGTCACCAAGGTCACAGGACCCAGGAATTGCGCCCTCCGGCATT|AATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAG___GGAGAGGTGATATCCAGCCTCAGTTGGACAGTGCTCTCCAAGATGTCAATGATAAGTATCTCTTATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTGATTGAAGAACGTGGCCGATTCTGTACCTTCATCTCTATGCTGCGGCCAGTGATT___GAAGAAGAAATCTCAATGCTAGGGGAAATAACCCACCTTCAGACCATCTCGGAAGATCTAAAAAGCCTGACCATGGACCCTCACAAACTGCC...TCTGATTACAGCTGGTCGTATCAGACGCCACCCTCTTCCCCCAGCACCACCATGTCCAGAAAGTCCAGTGTCTGCAG___CAGCCTGAACAGTGTCAACAGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25052 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193051754:- chr1:192981380-193029210:- chr1:193020884:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192766194:- chr1:192136916-192926843:- chr1:192735324:- chr1:193050455,chr1:193050457 chr1:192766835,chr1:192766834 NA NA chr1:193019585,chr1:193019587 chr1:192735965,chr1:192735964 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Ubiquitin_carboxyl-terminal_hydrolase__family_1(19%)| Peptidase_C12(24%)| 9 6 26 790 29 ENST00000367455.8 ENST00000644134.1 upstream downstream duplicates(2),mismatches(3) CTGAGATCTGTGGCCGGCGGCAGCTGGTGCGGGGGGCAGCTGAGAGCGAGAGGTGGATCGGGGCGGTGTGTGGCCAGGGCCATGACGGGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGGGTCTTCACCGAGCTCATTAAAGGATTCG___GTTGCCGAGGAGCCCAAGTAGAAGAAATATGGAGTTTAGAGCCTGAGAATTTTGAAAAATTAAA|CAGCACCATATGGCAGTGACAGCACCTTCTGCAAGAAGAGAAACTCTAAACCAATTACAACAATATCATTTCTGTGTTGAACCATAAGTCATTGGAAACCCACTGCAACCATGCTTCCATAATAGCAGCTGGAATCTCCAATTCTACAGAGAAAAG___GAATGTTGAAGTAACATACATGTAGCTTTGAGGAGGAGGCACGTGCATTCAAGCTCATGGAGAGGATTGACAGCCACAGACAGGCACTCATAAGAACT MTGNAGEWCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLn|stiwq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25054 COA1::SEMA3D ENSG00000106603.20::ENSG00000153993.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4236 FALSE NA COA1 ENSG00000106603.20 protein_coding - - chr7:43608456-43729717:- chr7:43639449:- chr7:43648055-43769316:- chr7:43679048:- SEMA3D ENSG00000153993.14 protein_coding - - chr7:84995553-85187056:- chr7:85073081:- chr7:84624869-84816372:- chr7:84702397:- chr7:43621359 chr7:85076587 NA NA chr7:43660958 chr7:84705903 NA NA sense sense stop-codon 3'UTR/splice-site CDS/splice-site duplication medium none Cytochrome_oxidase_complex_assembly_protein_1(100%)|Sema_domain(87%) Coa1(100%)|Ig_6(100%),Sema(68%) 0 2 3 691 127 ENST00000415076.6 ENST00000284136.11 upstream downstream mismatches(1) AAAACGGTGATGAAGTGAAAAAGGAGTAGAGACGACCCAGAAGACCCAGCTTGCTTCTAGTCCATCCTTCCCTCATCTCTACCATATGGCCACTGGGGTGGTGGCCCATCTCAGTGACAGACACTCCTGCAACCCAGTTTTCCAGCCACCAGTGGGATGATG|ACAGAATGTGCAAATTTCATCAGAGTACTTCAGCCCTATAACAAAACTCACATATATGTGTGTGGAACTGGAGCATTTCATCCAATATGTGGGTATATTGATCTTGGAGTCTACAAGGgG___GATATTATATTCAAACTAGACACACATAATTTGGAGTCTGGCAGACTGAAATGTCCTTTCGAT...TCATGACCACCACTACATCAGAACTGACATTTCAGAGCACTACTGGCTCAATG___GAGCAAAATTTATTGGAACTTTCTTCATACCAGACACCTACAATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25055 NDUFB9::ENSG00000253573 ENSG00000147684.10::ENSG00000253573.2 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NDUFB9 ENSG00000147684.10 protein_coding + + chr8:124539101-124580648:+ chr8:124547113:+ chr8:125551342-125592889:+ chr8:125559354:+ ENSG00000253573 ENSG00000253573.2 lncRNA - - chr8:126766196-126846981:- chr8:126845425:- chr8:127778441-127859226:- chr8:127857670:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon inversion medium none Complex_1_protein_(LYR_family)(100%)| Complex1_LYR(100%),Complex1_LYR_2(100%)| 3 3 6 37370 29 ENST00000517367.1 ENST00000520224.2 downstream downstream duplicates(2),mismatches(1) GTCAGCGCCGTAATGGCGTTCTTGGCGTCGGGACCCTACCTGACCCATCAGCAAAAGGTGTTGCGGCTTTATAAGCGGGCGCTgCGCCACCTCGAGTCGTG...CCCGGTTTGAAGAACATAAGAATGAAAAGGATATGGCGAAGGCCACCCAGCTGCTGAAGGAGGCCGAGGAAGAATTCTGGTACCGTCAGCATCCACAGCCATACATCTTCCCTGACTCTCCTGGGGGCACCTCCTATGAGAGATACGATTGCTACAAG___GTCCCAGAATGGTGCTTAGATGACTGGCATCCTTCTGAGAAGGCAATGTATCCTGATTACTTTGCCAAGAGAGAACAGTGGAAGAAACTGCGGAGGGAAAGCTGGGAACGAGAG|GCCAAAATGCGAATTTGAAACTCATTCCGAATGCCTTTCCAGGGAGGTGGCCACAGCTGATGAAAGACCTCACGCTTGTTCCAACAGGCCCTGGGAGCTGAATTGTATCCCTGAAACTGGCCTAGCTTCCTTCAGCTCAACAGAGCAGCTGAAAG___CCCTGGCAAATCCTACTCAGAGATTAAAAAGAAGAACTTCCAGCTGGGCATGGTGGCTCACGC RFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE|akmri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25057 SLC39A8::ENSG00000248161 ENSG00000138821.14::ENSG00000248161.5 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4237 TRUE 1606 SLC39A8 ENSG00000138821.14 protein_coding - - chr4:102251080-102431258:- chr4:102304317:- chr4:103172237-103352415:- chr4:103225474:- ENSG00000248161 ENSG00000248161.5 lncRNA - - chr4:102418602-102450010:- chr4:102418988:- chr4:103339759-103371167:- chr4:103340145:- chr4:102275373 chr4:102419729 NA NA chr4:103196530 chr4:103340886 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none ZIP_Zinc_transporter(47%)| Zip(21%)| 0 5 5 116 29 ENST00000424970.7 ENST00000512915.5 upstream downstream duplicates(3),mismatches(1) GTGTTTGGTGGATTTTACCTACTTTTCTTTTTTGAAAGAATGCTAAAGATGTTATTAAAGACATATGGTCAG___AATGGTCATACCCACTTTGGAAATGATAACTTTGGTCCTCAAGAAAAAACTCATCAACCTAAAGCATTACCTGCCATCAATGGTGTGACATGCTATGCAAATCCTGCTGTCACAGAAGCTAATGGACATATCCATTTTGATAATGTCAGTGTGGTATCTCTACAG|GTCACAGTGTCCATGTAACTAACTCCTGGTTAAGAGGATATGGATAGAAGGCACATGTTCAACTTCTGGCTTCTGTCCTTGAAAAGTGTGATGATTCCATCCTTTGCTGTCTTCCTTCCCGCTGACTGGAATGTGGACTTGGTAGTGAGCTACCTTGGACTATGTGGATGAAGACAAAGATAAAAGGAACCAAGGACTCTGATGATTCTGTAGAGAAGAGGAACCGTAGCTGCTCAAACGTTCATGTGAAAGAAGAAT VFGGFYLLFFFERMLKMLLKTYGQNGHTHFGNDNFGPQEKTHQPKALPAINGVTCYANPAVTEANGHIHFDNVSVVSLQ|vtvsm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25058 SLC39A8::ENSG00000248161 ENSG00000138821.14::ENSG00000248161.5 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4237 TRUE 1606 SLC39A8 ENSG00000138821.14 protein_coding - - chr4:102251080-102431258:- chr4:102307436:- chr4:103172237-103352415:- chr4:103228593:- ENSG00000248161 ENSG00000248161.5 lncRNA - - chr4:102418602-102450010:- chr4:102418988:- chr4:103339759-103371167:- chr4:103340145:- chr4:102275373 chr4:102419729 NA NA chr4:103196530 chr4:103340886 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none ZIP_Zinc_transporter(17%)| Zip(15%)| 0 1 1 144 29 ENST00000424970.7 ENST00000512915.5 upstream downstream none CAGCAATTGAACTTTCACCCATGTGAGGATCGGCCCAAGCACAAAACAAGACCAAGTCATTCAGAAG___TTTGGGGATATGGATTCCTGTCAGTGACGATTAT...TTTTGACCTTTTTTGTGGGGCTGGCTATTGGGACTCTTTTTTCAAATGCAATTTTCCAACTTATTCCAGAG|GTCACAGTGTCCATGTAACTAACTCCTGGTTAAGAGGATATGGATAGAAGGCACATGTTCAACTTCTGGCTTCTGTCCTTGAAAAGTGTGATGATTCCATCCTTTGCTGTCTTCCTTCCCGCTGACTGGAATGTGGACTTGGTAGTGAGCTACCTTGGACTATGTGGATGAAGACAAAGATAAAAGGAACCAAG LTFFVGLAIGTLFSNAIFQLIPE|vtvsm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25065 MAP4K3::SLC8A1 ENSG00000011566.15::ENSG00000183023.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP4K3 ENSG00000011566.15 protein_coding - - chr2:39249266-39437301:- chr2:39286848:- chr2:39476407-39664442:- chr2:39513989:- SLC8A1 ENSG00000183023.19 protein_coding - - chr2:40097270-40611053:- chr2:40411593:- chr2:40324410-40838193:- chr2:40638733:- chr2:39283427 chr2:40414319 NA NA chr2:39510568 chr2:40641459 NA NA sense sense out-of-frame intron intron duplication medium none Protein_kinase_domain(100%)|Calx-beta_domain(20%),Sodium/calcium_exchanger_protein(48%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Calx-beta(93%),Na_Ca_ex(97%) 0 1 4 195 2 ENST00000263881.8 unknown upstream downstream none CCAAGTTCCACCTAGACCACCACCTCCCAGATTACCCCCACACAAACCTGTTGCCTTAG___GAAATGGAATGAGCTCCTTCCAGTTAAATGGTGAACGAGATGGCTCATTATGTCAACAACAGAATGAACATAGAGGCACAAACCTTTCAAGAAAAGAAAAGAAAGATGTACCAGTAG|GTTTTTTTAAAGACAACGTTTATACATAAATAATATCATAGTAAACATTTTTGAGAAAGC...AGCTATTATTAACTTTAAATCAGTTACCTTTGAAATGTGCGTAGATTTGAATAGTAACTATTAGTGTTCAAAACTCTTCTTAAAATGCCCTTTGAAATTAT QVPPRPPPPRLPPHKPVALGNGMSSFQLNGERDGSLCQQQNEHRGTNLSRKEKKDVPv|gffkdnvyt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase kinase 3 STE STE20 KHS Q8IVH8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25066 GPC6::PSAT1 ENSG00000183098.12::ENSG00000135069.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:94027894:+ chr13:93879060-95060274:+ chr13:94680148:+ PSAT1 ENSG00000135069.14 protein_coding + + chr9:78297125-78330093:+ chr9:78300602:+ chr9:80912041-80945009:+ chr9:80915518:+ chr13:94040719,chr13:94040748,chr13:94040756,chr13:94040759,chr13:94040761,chr13:94040766 chr9:78297561,chr9:78297561,chr9:78297561,chr9:78297561,chr9:78297561,chr9:78297561 NA NA chr13:94692973,chr13:94693002,chr13:94693010,chr13:94693013,chr13:94693015,chr13:94693020 chr9:80912477,chr9:80912477,chr9:80912477,chr9:80912477,chr9:80912477,chr9:80912477 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Glypican(52%)|Aminotransferase_class-V(96%) Glypican(68%)|Aminotran_5(89%) 0 3 2 65 4994 ENST00000377047.9 ENST00000376588.4 downstream upstream mismappers(1),mismatches(1) AACCGAGTTTCCAAG___GTCAGCCCAACCCCAGGGTGTATCCGTGCCCTCATGAAGATGCTGTACTGCCCATACTGTCGGGGGCTTCCCACTGTGAGGCCCTGCAACAACTACTGTCTCAACGTCATGAAGGGCTGCTTGGCAAATCAGGCTGACCTCGACACAGAGTGGAATCTGTTTATAG|GTGTTGTTAGAGATACAAAAGGAATTATTAGACTACAAAGGAGTTGGCATTAGTGTTCTTG___AAATGAGTCACAGGTCATCAGATTTTGCCAAGATTATTAACAATACAGAGAATCTTGTGCGGGAATTGCT...TGCATGGcGTGGAGTTTGACTTTATACCCGATGTCAAGGGAGCAGTACTGGTTTGTGACATGTCCTCAAACTTCCTGTCCAAGCCAGTGGATGTTTCCAAG NRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKGCLANQADLDTEWNLFI|gvvrdtkgiirlqrswh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25070 DDX10::MTSS1 ENSG00000178105.12::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4238 TRUE 1607 DDX10 ENSG00000178105.12 protein_coding + + chr11:108665058-108940999:+ chr11:108685298:+ chr11:108535785-108811726:+ chr11:108556025:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124555904:- chr8:125563025-125740714:- chr8:125568145:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none DEAD/DEAH_box_helicase(100%)|WH2_motif(100%) DEAD(100%),ResIII(100%)|WH2(100%) 0 3 0 18 418 ENST00000686283.1 ENST00000518547.6 downstream downstream mismatches(1),multimappers(1) GCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|CCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAGGAGCAGCCGGGACTCGCTTCAGTGCTCCAGCGGCTACAGCACCCAGACAACCACCCCCTGCTGCTCTG...CACCATTCCAAGAAACAGCGACATCAGCCAGTCCTACCGACGGATGTTCCAAGCCAAGCGTCCAGCCTCAACTGCTGGCCTCCCCACCACCCTGGGACCTGCTATGGTCcCTCCAGGGGTTGCAACTATCCGACGGACCCCTTCCcCCAAGCCTTCTGTCCGCCGGGGAACCATTG RNIRVGVTRFSs|lvrrwrlvrswpwpclgacswtprgaagtrfsapaataprqpppaa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 1 Yes AML* leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25071 DDX10::MTSS1 ENSG00000178105.12::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4238 TRUE 1607 DDX10 ENSG00000178105.12 protein_coding + + chr11:108665058-108940999:+ chr11:108685298:+ chr11:108535785-108811726:+ chr11:108556025:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556354:- chr8:125563025-125740714:- chr8:125568595:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none DEAD/DEAH_box_helicase(100%)|WH2_motif(100%) DEAD(100%),ResIII(100%)|WH2(100%) 0 1 0 18 314 ENST00000686283.1 ENST00000518547.6 downstream downstream none GCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAG|CGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACC...GGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAGGAGCAGCCGGGACTCGCTTCAGTGCTCCAGCGGCTACAGCACCCAGACAACCACCCCC RNIRVGVTRFSs|aakrsenrtptgedplppaah NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 1 Yes AML* leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25075 CSMD3::PVT1 ENSG00000164796.18::ENSG00000249859.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4239 TRUE 1608 CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113436677:- chr8:113235157-114449168:- chr8:114448906:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr8:113205154 chr8:127808208 NA NA chr8:114217383 chr8:128820454 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 1 0 2 468 588 ENST00000297405.10 ENST00000651587.1 upstream upstream none CCGCGCACCAACAACAGCAACAACTCCACTGCGCCGGGCTGAGGAGCAGGAATTAGGAGCTCGCGAATAATATGAAAGGGATCCGCAAAGGGGAAAGCCGAGCAAAGGAATgCAAAC...GATGAAGAAAATGGGGATTAAAAGTGGATTTACGTTTTGtAACCcgGaaTTTTTATTGACGGTGTCTTGTGTGAAAG|AATCCTGTTACACCTGGGATTTAG MKKMGIKSGFTFcNpeFLLTVSCVK|escytwdl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 25076 CSMD3::PVT1 ENSG00000164796.18::ENSG00000249859.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4239 TRUE 1608 CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113376738:- chr8:113235157-114449168:- chr8:114388967:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ chr8:113205154 chr8:127808208 NA NA chr8:114217383 chr8:128820454 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 2 0 0 268 848 ENST00000343508.7 ENST00000651587.1 upstream upstream low_entropy(1) CGGAGAGCCGGACGACGCCGCAGCCCTTGGGGGAGTCCAGCGCCAGCTGGCGAAAA___GAAGCTTCATCTTCCAGATCATCCGGGAAAGGGGCAGAGGTGGCCGGTTGTTGCGACTCATAAACAACCTCTTCAGCACAACCCGGTTGAATGTGGAGTTGGTTCCTTTGCTGGAAACCTGTACAGCTTGACCGACAGACAGCCTCAG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCCCAGGAACGCTTGGAGGCTGAGGAGTTCACTGAGG MWSWFLCWKPVQLDRQTAS|egqnnglpdsqapprgspqerleaeefte NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 25077 CSMD3::PVT1 ENSG00000164796.18::ENSG00000249859.14 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4239 TRUE 1608 CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113436677:- chr8:113235157-114449168:- chr8:114448906:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128096518:+ chr8:128806772-129199347:+ chr8:129108764:+ chr8:113205154 chr8:127808208 NA NA chr8:114217383 chr8:128820454 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 2 0 0 468 848 ENST00000297405.10 ENST00000651587.1 upstream upstream none CAGGAATTAGGAGCTCGCGAATAATATGAAAGGGATCCGCAAAGGGGAAAGCCGAGCAAAGGAATCCAAACCCTGGGAGCCTGGCAAGCGAAGATGCGCTAAATGTGGCCGCCTAGACTTCATCCTGATGAAGAAAATGGGGATTAAAAGTGGATTTACGTTTTGGAACCTCGTCTTTTTATTGACGGTGTCTTGTGTGAAAG|AAGGACAGAATAACGGGCTCCCAGATTCACAAGCCCCACCAAGAGGATCACCC MKGIRKGESRAKESKPWEPGKRRCAKCGRLDFILMKKMGIKSGFTFWNLVFLLTVSCVK|egqnnglpdsqapprgs NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 25083 ENSG00000283563::ENSG00000258526 ENSG00000283563.1::ENSG00000258526.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4240 TRUE 1609 ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28576496:+ chr3:28390669-29809028:+ chr3:28617987:+ ENSG00000258526 ENSG00000258526.8 lncRNA + + chr14:39432599-40390547:+ chr14:39991060:+ chr14:39901803-40859751:+ chr14:40460264:+ chr3:28586935,chr3:28586931 chr14:39662470,chr14:39662463 NA NA chr3:28628426,chr3:28628422 chr14:40131674,chr14:40131667 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation medium none none PWWP(100%),zf-CW(100%)| 0 1 1 55 3 ENST00000635992.1 ENST00000651829.1 downstream upstream none GAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGAGCCCATCCCCCGCTCCCAGGGGGCTGGCGGAGCCTGCCAGGCGCCGCCACAGCCGCCCCAGCCCCA...CCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG|AcGGAAGCACTGCATTAGCGAGTCCTGAAGATCCTTTCCAGCTCTTTGATTATATGACATTCTGACTAGCACAAAGAGGCACACCTGCAATCCTACTGAGAGTTCCATGGATCATTAATGATTATTCATGGTGAAGGAAGCAGAGGTAATGTAGACTCTGAAAGCTGATACTTCTCATTGTAGAAGTACACTCTTGTGTTACAGgGTTTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25084 ENSG00000283563::ENSG00000258526 ENSG00000283563.1::ENSG00000258526.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4240 TRUE 1609 ENSG00000283563 ENSG00000283563.1 protein_coding + + chr3:28349178-29767537:+ chr3:28576496:+ chr3:28390669-29809028:+ chr3:28617987:+ ENSG00000258526 ENSG00000258526.8 lncRNA + + chr14:39432599-40390547:+ chr14:40318436:+ chr14:39901803-40859751:+ chr14:40787640:+ chr3:28586935,chr3:28586931 chr14:39662470,chr14:39662463 NA NA chr3:28628426,chr3:28628422 chr14:40131674,chr14:40131667 NA NA sense sense unknown 3'UTR/splice-site exon/splice-site translocation low none none PWWP(100%),zf-CW(100%)| 1 0 0 55 36 ENST00000635992.1 ENST00000652126.1 downstream upstream low_entropy(1) GCCCTCCGCACGCTCCTCTCTTTCTAGTCCTCGCCGCCACCACCTCGCACAG___TGAATGGGAAGATGGAGATGGATGTTGAGGGAGTTTCTCCGCGCCCGGA...GCTGGCTCAGGATGAACTGCCCGGCGAGAGTGCAGGCGCTGAGGACAGCGACGATCCCGAGACGAGACCCAACGGCGAGAAAGGAGAGAGCAAG|TTTCCCTTGGAATCCAGTCACCATGCTGTGAGGAAATCAAAGCCAAAGGGAAGTTTCACATGAAGAGCAATCAAGTCGTTTAGCCCTCAGCCTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25089 ADAT1::ENSG00000259992 ENSG00000065457.11::ENSG00000259992.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ADAT1 ENSG00000065457.11 protein_coding - - chr16:75596868-75623300:- chr16:75599311:- chr16:75630766-75657198:- chr16:75633209:- ENSG00000259992 ENSG00000259992.1 lncRNA - - chr16:75541399-75608445:- chr16:75601150:- chr16:75575297-75642343:- chr16:75635048:- NA NA NA NA NA NA NA NA sense sense unknown 3'UTR intron duplication low none Adenosine-deaminase_(editase)_domain(100%)| A_deamin(100%)| 0 2 3 118 10 ENST00000564657.2 unknown upstream downstream none GAAACAGCCAAGAGAATCAAAGATCTAGTAACACTGTTTAGATGTCTCAATTATGTGAGACAGATTCCTGTTGTTATTTTGATTAAGCCTGTTTGTGTTGG...GTCCAAAAAGCCAAAAGGTGGCCAGGCTTGGTGGCTCAGGCCTGTAATCCCAGCACTTTGGGAAGCCCAGGCAGGCAGATCACTTGAGGT|CAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCTTCGGCCTCCCAAAGTGCgGGGGTTACAGGTGTGAGCCACCATGCCTGGCCTAGAAAACTTTTAAACCAAAAAAGTAGACAGTTGTTTTTATTTTATCTGATTCCACTAGGACCATAGAAACCTAGAATTCTGTTCATTCTTAACTGTTT...AAGGAGACAGAGTTGCTCTAGGAAAGTGTCAAAAGTCAAAATAAAAATGTAAAGATAAATCTCTAAATTTAATATTTTATTTGGGATACAAGAAATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25099 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796009:+ chr8:128806772-129199347:+ chr8:128808255:+ CASC8 ENSG00000246228.7 lncRNA - + chr8:127289808-127482139:- chr8:127457381:+ chr8:128302053-128494384:- chr8:128469626:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron duplication/5'-5' low none none none 0 0 3 82 2 ENST00000651587.1 unknown downstream upstream none CTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGG...|...TGAAGCAAGTTTCCATGTTGTGAGCTGCCCTGTGAGAAGGTTTACTTGCTAGGAACTAAGAGTGGCCTCCAGCCAACAGCCAaCAAGGAAGTGAAGCCCTCAGTCTAACAGCTTGGGAGAAACTGAATTGTGCCATCAATCATGTGAGcGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25112 CASC15::ZMYM4 ENSG00000272168.10::ENSG00000146463.12 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC15 ENSG00000272168.10 lncRNA + - chr6:21664184-22654455:+ chr6:22222445:- chr6:21664415-22654684:+ chr6:22222674:- ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35358925:+ chr1:35734310-35887659:+ chr1:35824526:+ chr6:21868192,chr6:21868197 chr1:35334825,chr1:35334820 NA NA chr6:21868423,chr6:21868428 chr1:35800426,chr1:35800421 NA NA antisense sense unknown exon CDS/splice-site translocation/3'-3' high none |Domain_of_unknown_function_(DUF3504)(100%),MYM-type_Zinc_finger_with_FCS_sequence_motif(100%) |DUF3504(100%),zf-FCS(100%) 2 2 4 9 98 unknown ENST00000314607.11 upstream upstream none CCACCATGGAATACCAGATGGAACTGAAACTGGACCAAAGAACTAAGGACAAAAGGAA___CAGAACCATCAAGAGAGGAGGCTGGGCAACGCAGAGGAAATAAGACATTTTCAAAGACACACGCCAGAGTTGCGGAATTGCTAGTGCTGTCAAG|GTGGTGGTATCATGGATACAGAAATGTCTGAAGATATAGACCACAACTTAACTCCTACCCTTGACAGCATGTCTTATGGAATGCCGAATCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTGGTAGTGACAATGAGGATGA...TTTAGTTCAAAGGACAATCTTGTTTCTTCAAgTCATAtTGATGATAGCTTGGAAGTAGAGAGAAGAGTCACAtAGCATGAATCAGACAATGAAAATtAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25113 ZMYM4::CASC15 ENSG00000146463.12::ENSG00000272168.10 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325405:+ chr1:35734310-35887659:+ chr1:35791006:+ CASC15 ENSG00000272168.10 lncRNA + - chr6:21664184-22654455:+ chr6:22222971:- chr6:21664415-22654684:+ chr6:22223200:- chr1:35336793,chr1:35336786,chr1:35371621,chr1:35371629 chr6:22226423,chr6:22226430,chr6:22342709,chr6:22342709 NA NA chr1:35802394,chr1:35802387,chr1:35837222,chr1:35837230 chr6:22226652,chr6:22226659,chr6:22342938,chr6:22342938 NA NA sense antisense unknown CDS/splice-site intron translocation/5'-5' high none none none 1 1 3 74 6 ENST00000441447.1 unknown downstream downstream none CGAAAGAGG___GAACATCGTGATCAATTAGCCACTGCCAAAGATCCCTGCTGGCCAAAACATTCTGATTACCG___TTTGAACAAAAAAGTGGTGCAGTTTTTGATGAAATTGTAGAGAACT|ATGTTTCGTCTTTCTTAATCCCATTCTTAAAACCTCATGAATCTAAATCTCCTGCTGTCTCCACCATGGAATACCAGATGGAACTGAAACTGGACCAAAGAACTAAGGACAAAAGGAA___AACCATCAAGAGAGGAGGCTGGGCAACGCAGAGGAAATAAGACATTTTCAAAGACACACGCCAGAGTTGCGGAATTGCTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25118 CCT6A::ENSG00000249773 ENSG00000146731.11::ENSG00000249773.3 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4244 FALSE NA CCT6A ENSG00000146731.11 protein_coding + + chr7:56051685-56063989:+ chr7:56059640:+ chr7:56119378-56131682:+ chr7:56127333:+ ENSG00000249773 ENSG00000249773.3 protein_coding + + chr7:55887277-55955239:+ chr7:55906253:+ chr7:55954970-56022932:+ chr7:55973946:+ chr7:56059692,chr7:56059767,chr7:56059764 chr7:55893756,chr7:55893756,chr7:55893752 NA NA chr7:56127385,chr7:56127460,chr7:56127457 chr7:55961449,chr7:55961449,chr7:55961445 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none TCP-1/cpn60_chaperonin_family(65%)|KRAB_box(100%),Ribosomal_protein_S17(100%) Cpn60_TCP1(69%)|KRAB(100%),Ribosomal_S17(100%),zf-C2H2(100%),zf-C2H2_6(100%) 6 11 9 3510 53 ENST00000335503.3 ENST00000426595.1 downstream upstream duplicates(1) TTGTTGTTATTAATCAAAAG___GGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTcGCTCTGCGCAGAGCTAAAAGGAGAAATATGGAGAG___GCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATACATTG|GTCAACATACCTGGCCTAAGGAGGCAGGATTGAGTGACTCTCACTCACCACTGGTGTTGCTCTTTGAAAGTGGCGCTTGGCACCAGCATGAACTCCCCATCCTCAGCAATCCCATCAGGTGTTTTGG___GTCTTCAACCTAAAATTCTATCTTACAAGATCCTTGCCAGGATGCAGATTTGAATACTATAGTGAAGTCTGTACATGAAGAAATGATGCTTTTAGG VVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGHAGLVYEYTL|vnipglrrqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25120 CCT6A::ZNF713 ENSG00000146731.11::ENSG00000178665.16 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4245 FALSE NA CCT6A ENSG00000146731.11 protein_coding + + chr7:56051685-56063989:+ chr7:56059640:+ chr7:56119378-56131682:+ chr7:56127333:+ ZNF713 ENSG00000178665.16 protein_coding + + chr7:55887456-55942530:+ chr7:55906253:+ chr7:55955149-56010223:+ chr7:55973946:+ chr7:56059692,chr7:56059767,chr7:56059764 chr7:55893756,chr7:55893756,chr7:55893752 NA NA chr7:56127385,chr7:56127460,chr7:56127457 chr7:55961449,chr7:55961449,chr7:55961445 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none TCP-1/cpn60_chaperonin_family(65%)|KRAB_box(100%),Zinc_finger__C2H2_type(100%) Cpn60_TCP1(69%)|KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 6 11 9 3510 53 ENST00000335503.3 ENST00000411863.2 downstream upstream duplicates(1) TTGTTGTTATTAATCAAAAG___GGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTcGCTCTGCGCAGAGCTAAAAGGAGAAATATGGAGAG___GCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGCAGGACTTGTATATGAGTATACATTG|GTCAACATACCTGGCCTAAGGAGGCAGGATTGAGTGACTCTCACTCACCACTGGTGTTGCTCTTTGAAAGTGGCGCTTGGCACCAGCATGAACTCCCCATCCTCAGCAATCCCATCAGGTGTTTTGG___GTCTTCAACCTAAAATTCTATCTTACAAGATCCTTGCCAGGATGCAGATTTGAATACTATAGTGAAGTCTGTACATGAAGAAATGATGCTTTTAGG VVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGHAGLVYEYTL|vnipglrrqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25132 NDUFS7::DAZAP1 ENSG00000115286.21::ENSG00000071626.17 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4248 TRUE 1610 NDUFS7 ENSG00000115286.21 protein_coding + + chr19:1383527-1395589:+ chr19:1393330:+ chr19:1383526-1395588:+ chr19:1393329:+ DAZAP1 ENSG00000071626.17 protein_coding + + chr19:1407569-1435687:+ chr19:1416457:+ chr19:1407568-1435686:+ chr19:1416456:+ chr19:1395034,chr19:1395035 chr19:1415733,chr19:1415731 NA NA chr19:1395033,chr19:1395034 chr19:1415732,chr19:1415730 NA NA sense sense out-of-frame CDS/splice-site exon deletion/read-through low none NADH_ubiquinone_oxidoreductase__20_Kd_subunit(85%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) Oxidored_q6(53%)|RRM_1(100%),RRM_7(100%) 3 4 1 239 64 ENST00000539480.5 ENST00000589484.5 downstream upstream duplicates(1),mismatches(1) GCACATGGCAGCACCCCGCTACGACATGGACCGCTTTGGCGTGGTCTTCCGCGCCAGCCCGCGCCAGTCCGACGTCATGATCGTGGCCGGCACACTCACCAACAAGATGGCCCCAGCGCTTCGCAAG___GTCTACGACCAGATGCCGGAGCCGCGCTACGTGGTCTCCATGGGGAG___CTGCGCCAACGGAGGAGGCTACTACCACTATTCCTACTCGGTGGTGAGGGGCTGCGACCGCATCGTGCCCGTGGACATCTACATCCCAG|GGAAAGCAGGCAGGATGGGAGAGTCGCCGATAGAACCACCTCTTCCCTGCCTCCTGGGCTTGGGGGAAGCTTGAATGACATCTAAGGCCCCGTGCCTGG___GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCA HMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP|gkagrmgespiepplpcllglgea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25133 NDUFS7::DAZAP1 ENSG00000115286.21::ENSG00000071626.17 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4248 TRUE 1610 NDUFS7 ENSG00000115286.21 protein_coding + + chr19:1383527-1395589:+ chr19:1393330:+ chr19:1383526-1395588:+ chr19:1393329:+ DAZAP1 ENSG00000071626.17 protein_coding + + chr19:1407569-1435687:+ chr19:1417500:+ chr19:1407568-1435686:+ chr19:1417499:+ chr19:1395034,chr19:1395035 chr19:1415733,chr19:1415731 NA NA chr19:1395033,chr19:1395034 chr19:1415732,chr19:1415730 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none NADH_ubiquinone_oxidoreductase__20_Kd_subunit(85%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) Oxidored_q6(53%)|RRM_1(100%),RRM_7(100%) 1 1 1 239 834 ENST00000539480.5 ENST00000336761.10 downstream upstream inconsistently_clipped(1),mismatches(1) GATGGCCCCAGCGCTTCGCAAG___GTCTACGACCAGATGCCGGAGCCGCGCTACGTGGTCTCCATGGGGAG___CTGCGCCAACGGAGGAGGCTACTACCACTATTCCTACTCGGTGGTGAGGGGCTGCGACCGCATCGTGCCCGTGGACATCTACATCCCAG|GAAGCTCTTCGTGGGCGGTCTTGACTGGAGCACGACCCAAG___AGACTCTGCGCAGCTACTTTTCCCAATATGGAGAAGTCGTAGATTGTGTTATCATGAAAGATAAAACCACCAACCAGTCTCGAGG...ATaTAAAaACgCAAAaTGTaTGGGGACaGTGCTGGCCAGCAGACCGCACACGCTAGATGGtCGAAAC___ATCGACCCCAAGCCATGCAC?CCCC?G MAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP|gssswavltgarpkrlcaatfpnmeks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25141 ROCR::LINC00511 ENSG00000228639.8::ENSG00000227036.10 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROCR ENSG00000228639.8 lncRNA - - chr17:72021851-72058073:- chr17:72057459:- chr17:70017992-70054214:- chr17:70053600:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72533371:- chr17:70286232-70636611:- chr17:70529511:- chr17:72055556,chr17:72055560 chr17:72552277,chr17:72552278 NA NA chr17:70051697,chr17:70051701 chr17:70548417,chr17:70548418 NA NA sense sense unknown exon/splice-site exon/splice-site duplication low none none none 0 1 1 1 5 ENST00000540802.2 ENST00000701652.1 upstream downstream none CTAAACCACACCCGATGGCCAAGGGGCAGAGGAAAAGATGGCAGAGTAGAGACTCTTGGACTTACTCATTTGGATTTTGGAGTTTTACCTGACTTGGTCAAGCCTCATGCCAGATCCAG|ATAATTTTTCAGCCACTTCTCTTCAGGCCAAA...ACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGcCCACCTCTTGAGAGGCAGGAGCTCTGGATTTGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25156 FSTL4::ZNF608 ENSG00000053108.18::ENSG00000168916.16 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2315 TRUE 4252 TRUE 1611 FSTL4 ENSG00000053108.18 protein_coding - - chr5:133196455-133612541:- chr5:133567186:- chr5:132532147-132948232:- chr5:132902877:- ZNF608 ENSG00000168916.16 protein_coding - - chr5:124636913-124748807:- chr5:124701269:- chr5:123972606-124084500:- chr5:124036962:- chr5:133513952 chr5:124709643 NA NA chr5:132849643 chr5:124045336 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 12 40 27 189 422 ENST00000265342.12 ENST00000513986.2 upstream downstream duplicates(15),low_entropy(2),mismatches(3) CTGCATCTCACACTGCTCGGAGCCTCCCTGCCGGCTGCGCTGGGATGGATGGACCCAGGAACCAGCAGAGGCCCGGATGTGGGTGTGGGGGAGTCACAGGCAGAG___GAGCCCAGAAGCTTTGAAGTCACAAGAAGAGAAG|GTTGACCCCCTGTTTACAGTGCCAGCGCCACCACCGCCGATTTCCAGCAGTCTCACGCCTCAGATTCTACCCTCCTACTTTTCCCCATCTTCATCCAATATTGCAGCACCGGTTGAACAGCTTTTGGTTCGGACTCGTTCTGTGGGTGTCAATACATGTGAAGTTGGAGTAGTGACAGAGCCAGAGTGTCTTGGGCCCTGTGAACCTGGGACCAGTGTGAATTTGGAAGGGATCGTGTGGCATGAAACAGA LHLTLLGASLPAALGWMDPGTSRGPDVGVGESQAEEPRSFEVTRRE|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25157 FSTL4::ZNF608 ENSG00000053108.18::ENSG00000168916.16 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4252 TRUE 1611 FSTL4 ENSG00000053108.18 protein_coding - - chr5:133196455-133612541:- chr5:133603858:- chr5:132532147-132948232:- chr5:132939549:- ZNF608 ENSG00000168916.16 protein_coding - - chr5:124636913-124748807:- chr5:124701269:- chr5:123972606-124084500:- chr5:124036962:- chr5:133513952 chr5:124709643 NA NA chr5:132849643 chr5:124045336 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none none none 1 2 20 206 422 ENST00000265342.12 ENST00000513986.2 upstream downstream duplicates(1),mismatches(1) CTGGTCTTCCCCTCGGCCCCGGCCGTCTCAG___ACTCATCAAAATGAAACCAGGAGGCTTTTGGCTGCATCTCACACTGCTCGGAGCCTCCCTGCCGGCTGCGCTGGGATGGATGGACCCAGGAACCAGCAGAGGCCCGGATGTGGGTGTGGGGGAGTCACAGGCAGAG|GTTGACCCCCTGTTTACAGTGCCAGCGCCACCACCGCCGATTTCCAGCAGTCTCACGCCTCAGATTCTACCCTCCTACTTTTCCCCATCTTCATCCAATATTGCAGCACCGGTTGAACAGCTTTTGGTTCGGACTCGTTCTGTGGGTGTCAATACATGTGAAGTTGGAGTAGTGACAGAGCCAGAGTGTCTTGGGCCCTGTGAACCTGGGACCAGTGTGAATTTGGAAGGGATCGTGTGGCATGAAACAGAAGAAG___GTGTCCTAGTGGTCAAT MKPGGFWLHLTLLGASLPAALGWMDPGTSRGPDVGVGESQAE|VDPLFTVPAPPPPISSSLTPQILPSYFSPSSSNIAAPVEQLLVRTRSVGVNTCEVGVVTEPECLGPCEPGTSVNLEGIVWHETEEGVLVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25158 SMAD3::TTC23 ENSG00000166949.17::ENSG00000103852.13 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67187509:+ chr15:67356101-67487511:+ chr15:67479847:+ TTC23 ENSG00000103852.13 protein_coding - + chr15:99136323-99251223:- chr15:99218469:+ chr15:99676528-99791428:- chr15:99758674:+ chr15:67189840,chr15:67189840,chr15:67189840,chr15:67189839 chr15:99214577,chr15:99214573,chr15:99214578,chr15:99214569 NA NA chr15:67482178,chr15:67482178,chr15:67482178,chr15:67482177 chr15:99754782,chr15:99754778,chr15:99754783,chr15:99754774 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none MH1_domain(100%),MH2_domain(90%)| MH1(100%),MH2(85%)| 19 29 13 94 79 ENST00000559460.6 unknown downstream upstream duplicates(14),mismatches(3) GGGGAGGTCTTCGCAGAGTGCCTCAGTGACAGCGCTATTTTTGTCCAGTCTCCCAACTGTAACCAGCGCTATGGCTGGCACCCGGCCACCGTCTGCAAGATCCCACCAG___GATGCAACCTGAAGATCTTCAACAACCAGGAGTTCGCTGCCCTCCTGGCCCAGTCGGTCAACCAGGGCTTTGAGGCTGTCTACCAGTTGACCCGAATGTGCACCATCCGCATGAGCTTCGTCAAAGGCTGGGGAGCGGAGTACAG|TGACCTCCAGAGAAGCCATGGCCGCAGCCTCATGGAGATGCTCCTCCTACCTGAGACAGATTCTACAGGCAAAGAGCCTCCCGCCATCATGTATGCAAAATCCTAAACTTGAAACTTACTGTGCAAATGATAATCTGATCCGTGCTTCAATTTCTATCCATTCTTCCTTTATAATTCTTCCACATTGTAGCAGCTCCTTTGAAAGTCTC...___AGGTGGAGTTTCTCTCGAGGAGGCTGGAATAGTGCTGTCTGAAGCAGCTTGTTTTGG GEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYs|dlqrshgrslmemlllpetdstgkeppaimyaks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 25164 ASB3::MYCNUT ENSG00000115239.24::ENSG00000223850.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2319 TRUE 4253 TRUE 1612 ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53714384:- chr2:53759810-54087297:- chr2:53941521:- MYCNUT ENSG00000223850.1 lncRNA + + chr2:15920399-15936017:+ chr2:15935774:+ chr2:16060521-16076139:+ chr2:16075896:+ chr2:53706577,chr2:53707397,chr2:53686848,chr2:53686824,chr2:53686775,chr2:53706623,chr2:53616414,chr2:53598297,chr2:53598301,chr2:53599978,chr2:53600140,chr2:53606572,chr2:53617513 chr2:15922560,chr2:15924294,chr2:15922564,chr2:15922588,chr2:15922627,chr2:15923103,chr2:15928194,chr2:15933426,chr2:15932655,chr2:15934921,chr2:15934918,chr2:15927213,chr2:15928341 NA NA chr2:53933714,chr2:53934534,chr2:53913985,chr2:53913961,chr2:53913912,chr2:53933760,chr2:53843551,chr2:53825434,chr2:53825438,chr2:53827115,chr2:53827277,chr2:53833709,chr2:53844650 chr2:16062682,chr2:16064416,chr2:16062686,chr2:16062710,chr2:16062749,chr2:16063225,chr2:16068316,chr2:16073548,chr2:16072777,chr2:16075043,chr2:16075040,chr2:16067335,chr2:16068463 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| 7tm_1(100%),Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),ChaC(100%),PRKCSH(100%),PRKCSH_1(100%)| 9 5 11 136 40 ENST00000406053.5 ENST00000433810.1 upstream upstream duplicates(8),mismatches(1) CTGATCTTTACTGTAATGAGGACAGTTGGCAGTTACCTATTCATGCAGCTGCACAAATGGGCCATACAAA___AATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGACACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAGCCCAGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGA|GATGGATCATGAAGAGTGGAATTGCTTTTCCTCTTGGGGCAGGCACACCAACAGTGTATGTGAGGCCCCTGCTCCCACTCCCCAGGCTGGCCAGTACTTTGGGCCAATCTGCTAGACCCAAAAATGTTAATCTCACTGAGATTTAATTTGCATTCCCCTGACTACCGGTGAAGTTGAGCATCTTTTCATATGTTTATTGACAATTTGCATTTCTTATTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3682 chr2:53849122-53849205:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25165 ASB3::MYCNUT ENSG00000115239.24::ENSG00000223850.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4253 TRUE 1612 ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53714384:- chr2:53759810-54087297:- chr2:53941521:- MYCNUT ENSG00000223850.1 lncRNA + + chr2:15920399-15936017:+ chr2:15921568:+ chr2:16060521-16076139:+ chr2:16061690:+ NA NA NA NA NA NA NA NA sense sense unknown CDS/splice-site exon/splice-site inversion high none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| 7tm_1(100%),Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),ChaC(100%),PRKCSH(100%),PRKCSH_1(100%)| 0 1 11 136 21 ENST00000406053.5 ENST00000433810.1 upstream upstream duplicates(3) CTGATCTTTACTGTAATGAGGACAGTTGGCAGTTACCTATTCATGCAGCTGCACAAATGGGCCATACAAA___AATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGACACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAGCCCAGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGA|GTCTAAGCACCAGCGTGGTGGCCACCCCAGCAGCCTTGGACCCCTGAAGGCTTGAGCACCAAAGCACACACAGCTGCCTCTGGCTGAGTTCTGTGGTCGCCTGCACCCCCTCCACCTGCTTCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3682 chr2:53849122-53849205:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25168 ENSG00000228033::TEX41 ENSG00000228033.6::ENSG00000226674.11 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000228033 ENSG00000228033.6 lncRNA - + chr2:52722671-52961452:- chr2:52941341:+ chr2:52949809-53188590:- chr2:53168479:+ TEX41 ENSG00000226674.11 lncRNA + + chr2:144666312-145262988:+ chr2:145151471:+ chr2:145423879-146020556:+ chr2:145909038:+ NA NA NA NA NA NA NA NA antisense sense unknown intron exon/splice-site deletion/3'-3' high none none none 4 3 9 425 710 unknown ENST00000596747.6 downstream upstream duplicates(5),mismatches(5) CATGCTTCATGCCTATACAATGAAGTTTCCAGGAAAGGCTGAAGAGGATGAAATACGGAAGAGCTTCTGGGTAGCTGAACATCTGCAGTTCCTGGAGGGAACCTCTTCCCACATGCCTGTGCATCCCTTCTTCTGTATCCTTTGTAGTATCTTTACAATAAATTG___TGGTCTGGAAGTGAACCCACAATATCTCCAAG|ACACAAAGCAAATTCGAGCGATTTTCTTATTTGAGTTCAAAATGGGCTGTAAAGCAGTGGAGACAACTCGCAACATCAACAATCCATTTGGCCCAGGAACTGCTAATGAATGTACAGTGGAGTGGTGGTTCAAGAAGTCTGGCAAAGGAGATGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25172 CCDC162P::SLC35F1 ENSG00000203799.14::ENSG00000196376.11 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC162P ENSG00000203799.14 transcribed_unitary_pseudogene + + chr6:109165831-109355063:+ chr6:109197267:+ chr6:109487034-109676266:+ chr6:109518470:+ SLC35F1 ENSG00000196376.11 protein_coding + + chr6:117907264-118317676:+ chr6:118168546:+ chr6:118228427-118638839:+ chr6:118489709:+ chr6:109197675 chr6:118168282 NA NA chr6:109518878 chr6:118489445 NA NA sense sense unknown exon/splice-site intron deletion high none |Solute_carrier_family_35(79%) |CRT-like(88%),EamA(100%),SLC35F(35%) 8 2 2 37 8 ENST00000368966.10 unknown downstream upstream duplicates(7) CTGAAAATTTACCTTTGCTTCTGTTGCAG___TATTACACAGAGAGAATTGCCCAGCTGGCCCAGAGTAAATATTTACACATGCTTAGGTGGAAGAGGTTTTGCC...CAAG___AAACAAGTTGGCTACATTATGCAGGAGTACAATGACACCCTTCAGAGAGCTGAAAGATTGTCTGTTGCTCGAGAAAACTTCCTCATGGGAAAAAACAATCCTCCTAACTTGGTGACACAGGAAGATCTGACTATTTACACAAAGTGGTTAGTGTGCCACCTGCACTCTCTTGGGACTGTTCACCAGTACCTGCAG|ACGGTGGTTAACGATGGATAACTGAAACCGTGGAAAGTGAAAATGCAGATAAGGGATATGAGTCACTTCCAAGACTCTTAACTGTCTCGTCTTCCTTTACGAGCAGTTATATATAGGTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25179 MARCHF3::COMMD10 ENSG00000173926.6::ENSG00000145781.9 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4257 TRUE 1613 MARCHF3 ENSG00000173926.6 protein_coding - - chr5:126867714-127030558:- chr5:126914930:- chr5:126203406-126366250:- chr5:126250622:- COMMD10 ENSG00000145781.9 protein_coding + + chr5:116085016-116412762:+ chr5:116291517:+ chr5:115420713-115748459:+ chr5:115627214:+ chr5:126870415,chr5:126870415,chr5:126870418 chr5:116229542,chr5:116229545,chr5:116229539 NA NA chr5:126206107,chr5:126206107,chr5:126206110 chr5:115565239,chr5:115565242,chr5:115565236 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none RING-variant_domain(100%)|COMM_domain(44%) RINGv(100%)|COMM_domain(0%) 0 2 2 292 511 ENST00000308660.6 ENST00000274458.9 upstream upstream duplicates(2) GAGCTGCCTGGAGCACTGGCTGTCATCCTCAAACACCAGCTACTGTGAACTCTGCCACTTCAGGTTTGCAGTCGAGCGCAAACCCAGGCCGTTAGTGGAG|AGCCTGGAGAAAGTTCTTGTGGAATTCAGTCACAAGGAGTTGTTTGATTTCTATAACAAG___CTAGAGACTATACAAGCACAGCTGGATTCCCTTACATGATGTTTTCGAAGACTGTTTTTTTCATCACGCTCCTGCCACCTCATTATTTTGCATTGAAG...TAGAGATCATTGTTAAGAATtCTGAGGTTCTAATATACTTTCTTTAGTTCTGTGAGCCAACAGTAATTATTAAGAACACTTTCCCTTTAAAGGAAACAAAA SCLEHWLSSSNTSYCELCHFRFAVERKPRPLVE|SLEKVLVEFSHKELFDFYNKLETIQAQLDSLT* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25180 MARCHF3::COMMD10 ENSG00000173926.6::ENSG00000145781.9 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4257 TRUE 1613 MARCHF3 ENSG00000173926.6 protein_coding - - chr5:126867714-127030558:- chr5:126870416:- chr5:126203406-126366250:- chr5:126206108:- COMMD10 ENSG00000145781.9 protein_coding + + chr5:116085016-116412762:+ chr5:116229541:+ chr5:115420713-115748459:+ chr5:115565238:+ NA NA chr5:126870415,chr5:126870415,chr5:126870418 chr5:116229545,chr5:116229542,chr5:116229539 NA NA chr5:126206107,chr5:126206107,chr5:126206110 chr5:115565242,chr5:115565239,chr5:115565236 sense sense stop-codon 3'UTR intron inversion medium none RING-variant_domain(100%)|COMM_domain(44%) RINGv(100%)|COMM_domain(31%) 28 18 27 129 53 ENST00000308660.6 unknown upstream upstream duplicates(23),mismatches(5) GTCAATGTACCTTCTAACCAGCCGTCCTTGCTGGGCCTCCATTCGGTCAAGAGGAACTCAAAGGAGACAGTTGTTTGATGTTTGTATGGTTGGTTGGTTGTTTGATTCATTGTTTGGGGTTTGGAAGTGTCTGCACTGGGGTCATGCACTGAGCGACCCCCAAGCCCTTCCTTAAGCCTGTGGGTCTAAGAACATCCAGAGCATATTAGCACATCACTCCAAGCAACAACCTCCGCCAGAAGAAAGCAAATGCTGTTTTACTTCAAATGATGGATGCTGCAATCATATGATATTT|TGAGCAGTTCTGTAGCaCAACACTGTTAGCTGCTAAAGGACTCAAAAGGAGAAGACAGTATGATTTTGCACTAAAGTAGTTTATCATCTAAATTGGAAGACAAACGGTTCATATGTGAAACAGCTAGAAAACAAATTATGACAGTATATAATTGAGTGTACAGTTGTTCATGCAACAGAATACAAGCACAATTTATTTGTCCAGCAAGTGAAAAGATATATCTTTATAATGTTTATAATGTTAAATTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-12130 chr5:116255743-116255834:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25185 GACAT3::ASB3 ENSG00000236289.4::ENSG00000115239.24 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16013962:+ chr2:16154050-16227323:+ chr2:16154084:+ ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53670692:- chr2:53759810-54087297:- chr2:53897829:- chr2:16027705,chr2:16027704,chr2:16027707,chr2:16027703,chr2:16027698,chr2:16027705,chr2:16027697,chr2:16027706,chr2:16027702,chr2:16027703,chr2:16027704,chr2:16028060,chr2:16028062,chr2:16028062,chr2:16028062,chr2:16027210,chr2:16028055,chr2:16028056,chr2:16021373,chr2:16028088,chr2:16028207,chr2:16027682,chr2:16027679,chr2:16027710,chr2:16027682,chr2:16027678,chr2:16027706,chr2:16028023 chr2:53689669,chr2:53689669,chr2:53689645,chr2:53689669,chr2:53689669,chr2:53689668,chr2:53689669,chr2:53689667,chr2:53689669,chr2:53689667,chr2:53689656,chr2:53703561,chr2:53703558,chr2:53703557,chr2:53703554,chr2:53703615,chr2:53703566,chr2:53703565,chr2:53707431,chr2:53707431,chr2:53707578,chr2:53689664,chr2:53689664,chr2:53689664,chr2:53707916,chr2:53689664,chr2:53689668,chr2:53689669 NA NA chr2:16167827,chr2:16167826,chr2:16167829,chr2:16167825,chr2:16167820,chr2:16167827,chr2:16167819,chr2:16167828,chr2:16167824,chr2:16167825,chr2:16167826,chr2:16168182,chr2:16168184,chr2:16168184,chr2:16168184,chr2:16167332,chr2:16168177,chr2:16168178,chr2:16161495,chr2:16168210,chr2:16168329,chr2:16167804,chr2:16167801,chr2:16167832,chr2:16167804,chr2:16167800,chr2:16167828,chr2:16168145 chr2:53916806,chr2:53916806,chr2:53916782,chr2:53916806,chr2:53916806,chr2:53916805,chr2:53916806,chr2:53916804,chr2:53916806,chr2:53916804,chr2:53916793,chr2:53930698,chr2:53930695,chr2:53930694,chr2:53930691,chr2:53930752,chr2:53930703,chr2:53930702,chr2:53934568,chr2:53934568,chr2:53934715,chr2:53916801,chr2:53916801,chr2:53916801,chr2:53935053,chr2:53916801,chr2:53916805,chr2:53916806 NA NA sense sense unknown exon/splice-site intron inversion high none |SOCS_box(100%) |SOCS_box(100%) 0 2 1 12 103 ENST00000652394.1 ENST00000406625.6 downstream downstream duplicates(1) TGCACTCTCCTCCTGGTCATCCGGAGCAAGGGTCTTCAGAGCCCGAGATGCGCGACGCGCAGGAAGCACCAGAGAGGGTGGCGGGAAGAAAAGGCACCTCCATCACTTTGAAATGTCAG|AGCCACTGTTCCATCCCTGACCCATCTTTGTCGTTTGGAAATTCGGTCCAGTCTAAAATCAGAACGTCTACGGTCTGACAGTTATATTAGTCAGCTG...TCTGAGGATGTATGAAGTTCCAGAACTGGCAGCTATTCAAGATGGATAAATCAGTGAAACTACTTAACACAGCTAATTTTTTTCTCTGAAAAATCATCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25187 TMEM163::LINC01853 ENSG00000152128.13::ENSG00000224028.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4259 TRUE 1614 TMEM163 ENSG00000152128.13 protein_coding - - chr2:134455759-134719000:- chr2:134550570:- chr2:135213330-135476570:- chr2:135308141:- LINC01853 ENSG00000224028.1 lncRNA - - chr2:140103583-140131780:- chr2:140116444:- chr2:140861152-140889349:- chr2:140874013:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 3 0 1 65 74 ENST00000281924.6 ENST00000417715.1 upstream downstream duplicates(1) GGCTGTCTGCACTGATCCTCTGTTGCCTTGCTGGCATCCTTACCTCTTTGTGCATTTCCAAG___CTGTCTCCGTTATGAGGTACAGCGCCTCTGCTTTTGGGTTTGCA___TTTGATGCCATCCTGGACGTCCTGTCATCGGCGATTGTCCTGTGGCGTTACAGCAACGCGGCCGCTGTGCACTCTGCCCATAGGGAGTACAT|AAGGCCCTTGCAAGACACCAGTACCTTGATATTTGACTTCCAGTCTCCAGAACT___TGGAACCTGAACAGTCTGC avctdpllpcwhpylfvhfqaVSVMRYSASAFGFAFDAILDVLSSAIVLWRYSNAAAVHSAHREYi|rplqdtstlifdfqspelgt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25188 TMEM163::LINC01853 ENSG00000152128.13::ENSG00000224028.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4259 TRUE 1614 TMEM163 ENSG00000152128.13 protein_coding - - chr2:134455759-134719000:- chr2:134550570:- chr2:135213330-135476570:- chr2:135308141:- LINC01853 ENSG00000224028.1 lncRNA - - chr2:140103583-140131780:- chr2:140114104:- chr2:140861152-140889349:- chr2:140871673:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 1 65 83 ENST00000281924.6 ENST00000417715.1 upstream downstream none AGTTTGATGCCATCCTGGACGTCCTGTCATCGGCGATTGTCCTGTGGCGTTACAGCAACGCGGCCGCTGTGCACTCTGCCCATAGGGAGTACAT|TGGAACCTGAACAGTCTGCTGAAGCACCTGATGTTTGGCCTTCCTGAATGTCATGTAATACGT___ATTCATTTTTTCCAGCTGAAAATAAATAGAATTGGAAAAAAAAGAAATTATGTAAC FDAILDVLSSAIVLWRYSNAAAVHSAHREYi|gt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25189 TMEM163::LINC01853 ENSG00000152128.13::ENSG00000224028.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4259 TRUE 1614 TMEM163 ENSG00000152128.13 protein_coding - - chr2:134455759-134719000:- chr2:134550570:- chr2:135213330-135476570:- chr2:135308141:- LINC01853 ENSG00000224028.1 lncRNA - - chr2:140103583-140131780:- chr2:140103770:- chr2:140861152-140889349:- chr2:140861339:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 0 1 0 65 172 ENST00000281924.6 ENST00000417715.1 upstream downstream none GTTACAGCAACGCGGCCGCTGTGCACTCTGCCCATAGGGAGTACAT|ATTCATTTTTTCCAGCTGAAAATAAATAGAATTGGAAAAAAAAGAAATTATGTAACGTGAGAGGAAAAAGCCTTTGAAGTGAACTCTTCTGGAAGTTTTATGTTCATTGCTATCCTTTAGCTTTCCCAAAAT YSNAAAVHSAHREYi|fifss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25191 TEX9::MNS1 ENSG00000151575.15::ENSG00000138587.6 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TEX9 ENSG00000151575.15 protein_coding + + chr15:56243971-56445997:+ chr15:56373504:+ chr15:56536169-56738195:+ chr15:56665702:+ MNS1 ENSG00000138587.6 protein_coding - + chr15:56421544-56465137:- chr15:56459628:+ chr15:56713742-56757335:- chr15:56751826:+ NA NA NA NA NA NA NA NA sense antisense stop-codon CDS/splice-site intron deletion/read-through/5'-5' medium none none none 2 2 7 2548 153 ENST00000558083.2 unknown downstream upstream duplicates(1),mismappers(1) CTCCAGGCTCCTGGGGAGCGTCTGGGTTCCGGCGACTAGGACGCCTAACTTCCTTTAACTTCGGGTCTGAAAGTCTGTGGCTCTTTTACAGAGAAGCAGCGTTCCAGGGACTCCGTTCCCGCCACCCGTTCAGCAACCCTCTACACCTGGACCCGACCTCCTCGCCTTGGAGGAAGAATATAA___GCGTTTAAATGCAGAATTGCAGGCAAAAACAGCTGACGTGGTTCAACAAGCTAAGGAAATAATA|GTCATGAAAGACAGCAAAAAGTGAAGAATTCTTACAAACTAGAGGAGACAAAGATTGGAGAAGAAACAATGACTGGCTGGGCACGGTGGCTCATGCCTGTAATCCACTTTGGGAGCACTTTGGGAGGCCGAAGAGGACAGATCATCTTAGGTTGGGAGTTGGAGACGAGCCTGACCAACGTGGAGAAACCCCATCCCTACTAAAAATACAGAATTAGCTGGGTGTGGTGGTGCATGCCTATAATCCCAGCTACTTGGAAGGCCTCGGCAGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25206 GACAT3::TEX41 ENSG00000236289.4::ENSG00000226674.11 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16042781:+ chr2:16154050-16227323:+ chr2:16182903:+ TEX41 ENSG00000226674.11 lncRNA + + chr2:144666312-145262988:+ chr2:145142362:+ chr2:145423879-146020556:+ chr2:145899929:+ chr2:16048749,chr2:16048722,chr2:16048749,chr2:16048749,chr2:16048735,chr2:16048749,chr2:16048747,chr2:16048751,chr2:16048749,chr2:16048749,chr2:16048748,chr2:16048744,chr2:16048749,chr2:16048896,chr2:16048908,chr2:16048908,chr2:16048909,chr2:16048749,chr2:16048749,chr2:16048729,chr2:16048730,chr2:16048745,chr2:16048749,chr2:16048718,chr2:16048736,chr2:16048750,chr2:16048751,chr2:16048750,chr2:16048750,chr2:16048750,chr2:16048749,chr2:16048750,chr2:16048750,chr2:16048749 chr2:145130292,chr2:145130346,chr2:145130274,chr2:145130297,chr2:145130292,chr2:145130287,chr2:145130292,chr2:145130292,chr2:145130294,chr2:145130298,chr2:145130292,chr2:145130292,chr2:145130273,chr2:145130355,chr2:145130352,chr2:145130351,chr2:145130355,chr2:145130272,chr2:145130554,chr2:145130292,chr2:145130292,chr2:145130292,chr2:145130296,chr2:145130292,chr2:145130292,chr2:145130285,chr2:145130286,chr2:145130286,chr2:145130292,chr2:145130297,chr2:145130300,chr2:145130302,chr2:145130323,chr2:145130285 NA NA chr2:16188871,chr2:16188844,chr2:16188871,chr2:16188871,chr2:16188857,chr2:16188871,chr2:16188869,chr2:16188873,chr2:16188871,chr2:16188871,chr2:16188870,chr2:16188866,chr2:16188871,chr2:16189018,chr2:16189030,chr2:16189030,chr2:16189031,chr2:16188871,chr2:16188871,chr2:16188851,chr2:16188852,chr2:16188867,chr2:16188871,chr2:16188840,chr2:16188858,chr2:16188872,chr2:16188873,chr2:16188872,chr2:16188872,chr2:16188872,chr2:16188871,chr2:16188872,chr2:16188872,chr2:16188871 chr2:145887859,chr2:145887913,chr2:145887841,chr2:145887864,chr2:145887859,chr2:145887854,chr2:145887859,chr2:145887859,chr2:145887861,chr2:145887865,chr2:145887859,chr2:145887859,chr2:145887840,chr2:145887922,chr2:145887919,chr2:145887918,chr2:145887922,chr2:145887839,chr2:145888121,chr2:145887859,chr2:145887859,chr2:145887859,chr2:145887863,chr2:145887859,chr2:145887859,chr2:145887852,chr2:145887853,chr2:145887853,chr2:145887859,chr2:145887864,chr2:145887867,chr2:145887869,chr2:145887890,chr2:145887852 NA NA sense sense unknown intron intron deletion low none none none 0 4 0 39 222 unknown ENST00000596747.6 downstream upstream duplicates(3) AGGTGGAGATTCACCAGAATGAGATATTGCAGAACCAGGATTCAAAG|GTGGTCTAGGATGGGTCTGAGATGTCACATTTCTAACAAATTCCTAG___TCTACAGTATGCTTCCACGTTTACTGTCATATCTCCTATTAGCAACATTTTGTTCCTCTACAG___...GAGACTGTTTTCATGATATGGAGACTGAGCTGAAAGGATTTCCTCCTCTATGTTCATCATAGCTTTTAATTTAATTTTACTCACCTTACTTTGGCTCGAG...GTGGAGTGGTGGTTCAAGAAGTCTGGCAAAGGAGATGAGAGCCTTGAAGATGAGGAGTGTAGTGGCTGACCATTGGAAATTGACAACAACCAATTAAGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25208 TEX41::LRRTM4 ENSG00000226674.11::ENSG00000176204.14 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TEX41 ENSG00000226674.11 lncRNA + + chr2:144666312-145262988:+ chr2:145172120:+ chr2:145423879-146020556:+ chr2:145929687:+ LRRTM4 ENSG00000176204.14 protein_coding - + chr2:76747685-77593319:- chr2:76987763:+ chr2:76974811-77820445:- chr2:77214889:+ chr2:145181197,chr2:145181174,chr2:145181197,chr2:145181197,chr2:145181187,chr2:145181183,chr2:145181186,chr2:145181196,chr2:145181195,chr2:145181197,chr2:145181198,chr2:145181198 chr2:76985061,chr2:76985059,chr2:76985063,chr2:76985066,chr2:76985047,chr2:76985047,chr2:76985047,chr2:76985057,chr2:76985057,chr2:76985062,chr2:76985078,chr2:76985095 NA NA chr2:145938764,chr2:145938741,chr2:145938764,chr2:145938764,chr2:145938754,chr2:145938750,chr2:145938753,chr2:145938763,chr2:145938762,chr2:145938764,chr2:145938765,chr2:145938765 chr2:77212187,chr2:77212185,chr2:77212189,chr2:77212192,chr2:77212173,chr2:77212173,chr2:77212173,chr2:77212183,chr2:77212183,chr2:77212188,chr2:77212204,chr2:77212221 NA NA sense antisense unknown exon intron duplication/5'-5' low none none none 0 0 3 55 125 ENST00000627051.2 unknown downstream upstream duplicates(2) CTTTcAgaA___GTAAACCTCAGGTTCTCCTCCTGCCTTTTGCTAAGTATATGTCTTGATGACAAGCCTTCTGCTGATGAGCTGTGTTTCTGGACCGATCATGGTAGAAGTCAATTAACGTGTCCCTCACTTGGG...|...AACATGAGCTCATGGTGTTCCTCCACTTTGGAGGCCTGAAAAAGAAACACCGGGAAAATTCTGCAGGACATTTCACTACTCCACTGACTAAAAGGGCCAGGAAATATAGTCACCCATATGCCCAAAAAAGAAAAGAGCTGAATATTG___TCTGCAGCCAACCTAATTTCTCCAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25231 ASB3::MYCNOS ENSG00000115239.24::ENSG00000233718.9 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53714384:- chr2:53759810-54087297:- chr2:53941521:- MYCNOS ENSG00000233718.9 lncRNA - + chr2:15918350-15942249:- chr2:15928804:+ chr2:16058473-16082371:- chr2:16068926:+ chr2:53686848,chr2:53686824,chr2:53686775,chr2:53706623,chr2:53616414,chr2:53606572,chr2:53706577,chr2:53707397 chr2:15922564,chr2:15922588,chr2:15922627,chr2:15923103,chr2:15928194,chr2:15927213,chr2:15922560,chr2:15924294 NA NA chr2:53913985,chr2:53913961,chr2:53913912,chr2:53933760,chr2:53843551,chr2:53833709,chr2:53933714,chr2:53934534 chr2:16062686,chr2:16062710,chr2:16062749,chr2:16063225,chr2:16068316,chr2:16067335,chr2:16062682,chr2:16064416 NA NA sense antisense unknown CDS/splice-site intron inversion/5'-5' low none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%)| 7tm_1(100%),Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),ChaC(100%),PRKCSH(100%),PRKCSH_1(100%)| 1 0 0 136 30 ENST00000406053.5 unknown upstream upstream duplicates(1) CACAAATGGGCCATACAAA___AATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGACACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTG...AGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGA|CCCCTCTACTAGCATGGATGGTGAGAAATGAGTCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-3682 chr2:53849122-53849205:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25237 PLXNB2::ENSG00000289960 ENSG00000196576.16::ENSG00000289960.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4263 TRUE 1615 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50276629:- chr22:50713408-50746075:- chr22:50715058:- ENSG00000289960 ENSG00000289960.1 lncRNA + + chr22:19854972-19867419:+ chr22:19860212:+ chr22:19842495-19854942:+ chr22:19847735:+ chr22:50276305 chr22:19860121 NA NA chr22:50714734 chr22:19847644 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none IPT/TIG_domain(100%),Plexin_cytoplasmic_RasGAP_domain(95%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)| PSI(100%),Plexin_cytopl(93%),Sema(100%),TIG(100%),TIG_plexin(100%)| 176 244 300 783 841 ENST00000359337.9 ENST00000702189.1 upstream upstream duplicates(30),low_entropy(1),mismatches(33) CCTCGCTGTCAGTCATCGCGCAGACCTTCATGGATGCCTGCACGCGCACGGAGCATAAGCTGAGCCGC___GATTCTCCCAGCAACAAGCTGCTGTACGCCAAGGAGATCTCCACCTACAAGAAGATGGTGGAGGA___TTACTACAAGGGGATCCGGCAGATGGTGCAGGTCAGCGACCAGGACATGAACACACACCTGGCAGAGATTTCCCGG|GGTCTCGCTCCATCACTCAGCCTGGACACAGCTCGCTGCAGCCTCAATTCCTGGGCTCAAGTGATCCTACCCCCTCGGCCTCCCGAGCAGCTGGGACAACAG___TGTATGGTCTACTTGGTGAAAGTTCCATGTGCAACTGAAAAGAATATGAAGTGTGAAAC SLSVIAQTFMDACTRTEHKLSRDSPSNKLLYAKEISTYKKMVEDYYKGIRQMVQVSDQDMNTHLAEISR|glapslsldtarcslnswaqvilpprppeqlgqqcmvylvkvpcateknmkce NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25238 PLXNB2::ENSG00000289960 ENSG00000196576.16::ENSG00000289960.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4263 TRUE 1615 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50276629:- chr22:50713408-50746075:- chr22:50715058:- ENSG00000289960 ENSG00000289960.1 lncRNA + + chr22:19854972-19867419:+ chr22:19866807:+ chr22:19842495-19854942:+ chr22:19854330:+ chr22:50276305 chr22:19860121 NA NA chr22:50714734 chr22:19847644 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none IPT/TIG_domain(100%),Plexin_cytoplasmic_RasGAP_domain(95%),Plexin_repeat(100%),Sema_domain(100%),TIG_domain(100%)| PSI(100%),Plexin_cytopl(93%),Sema(100%),TIG(100%),TIG_plexin(100%)| 90 106 136 783 820 ENST00000359337.9 ENST00000702189.1 upstream upstream duplicates(16),mismatches(22) GCACGCGCACGGAGCATAAGCTGAGCCGC___GATTCTCCCAGCAACAAGCTGCTGTACGCCAAGGAGATCTCCACCTACAAGAAGATGGTGGAGGA___TTACTACAAGGGGATCCGGCAGATGGTGCAGGTCAGCGACCAGGACATGAACACACACCTGGCAGAGATTTCCCGG|TGTATGGTCTACTTGGTGAAAGTTCCATGTGCAACTGAAAAGAATATGAAGTGTGAAACGTATGTGAAGAATGATGGTGGGACTCTGGTATAATCATCTTGGAAAAAGTATTTGTCATTCTTGTGTTAAACATATACCTACCTATGACCTAGCCATTTCACTCGTAGATGTTCATCCAAGAGAACTGAAAATGTATGTCTACACAGAAAGTTTTACATTAACATTCATTGTAGCTTCATTTGTAATAGCCAAAAACAAC TRTEHKLSRDSPSNKLLYAKEISTYKKMVEDYYKGIRQMVQVSDQDMNTHLAEISR|cmvylvkvpcateknmkcetyvkndggtlv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25239 PXMP4::RBM39 ENSG00000101417.12::ENSG00000131051.24 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2321 FALSE NA FALSE NA PXMP4 ENSG00000101417.12 protein_coding - - chr20:33702758-33720319:- chr20:33720095:- chr20:32290564-32308125:- chr20:32307901:- RBM39 ENSG00000131051.24 protein_coding - - chr20:35701347-35742312:- chr20:35732135:- chr20:34289269-34330234:- chr20:34320057:- chr20:33718778,chr20:33718786,chr20:33718908 chr20:35733855,chr20:35733860,chr20:35733595 NA NA chr20:32306584,chr20:32306592,chr20:32306714 chr20:34321777,chr20:34321782,chr20:34321517 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Tim17/Tim22/Tim23/Pmp24_family(12%)|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),linker_between_RRM2_and_RRM3_domains_in_RBM39_protein(100%) Tim17(0%)|RBM39linker(100%),RRM_1(100%),RRM_5(100%) 62 51 55 245 4791 ENST00000409299.8 ENST00000253363.11 upstream downstream duplicates(11),mismatches(13) CGCAGCTGGAACCTCCGGCTGTCAGTGCGCTTACAGTTCCTAACCCCGACCCTGCGCGCAGCCCGCACTATGGCAGCCCCGCCGCAGCTAAGGGCTCTGCTCGTAGTCGTCAACGCACTGCTGCGCAAGCGCCGCTACCACGCTGCGTTGGCCGTGCTTAAGGGCTTCCGGAACGGGGCTGT|GAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCGAGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTA___CTCCGGAC MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAv|RKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25240 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2322 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72196811:- chr10:73855790-73976892:- chr10:73956569:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72423371:- chr10:74127098-74385889:- chr10:74183129:- chr10:72187166,chr10:72187744,chr10:72187744,chr10:72187744 chr10:72429399,chr10:72429444,chr10:72429420,chr10:72429443 NA NA chr10:73946924,chr10:73947502,chr10:73947502,chr10:73947502 chr10:74189157,chr10:74189202,chr10:74189178,chr10:74189201 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none AKAP7_2'5'_RNA_ligase-like_domain(12%),KH_domain(100%)|EF-hand_domain_pair(100%) AKAP7_NLS(0%),KH_1(100%)|EF-hand_8(82%) 59 28 48 561 434 ENST00000672957.1 ENST00000361114.10 upstream downstream duplicates(9),mismatches(2) CCTGGACAAGACGGGGAAATTG___TAATCACTGGCCAGCATCGAAATGGTGTAATTTCAGCCCGAACACGGATTGATGTTCTTTTGGACACTTTTCGAAGAAAGCAGCCCTTCACTCACTTCCTTGCCTTTTTCCTCAATGAAGTTGAGGTTCAGGAAGGATTCCTGAGATTCCAGGAGGAAGTACTGGCGAAGTGCTCCATG|TTTGAACGCCATGACCCTGTGGATGGGAGAATTACTGAGAGGCAGTTTGGTGGCATGCTACTTGCCTACAGTGGGGTGCAGTCCAAGAAGCTGACCGCCATGCAGAGGCAGCTCAAGAAGCACTTCAAAGAAGGAAAG___GGTCTGACATTTCAGGAGGTGGAGAACTTCTTTACTTTCCTAAAGAACATTAATGATGTGGACA PGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSM|FERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus no_match TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST no_match 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,TRUE,TRUE,TRUE,TRUE,TRUE 74135630,74135630,74135630,74167795,74167795,74183129 FALSE,FALSE,FALSE,FALSE,FALSE,TRUE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25241 ENTPD6::APMAP ENSG00000197586.13::ENSG00000101474.12 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENTPD6 ENSG00000197586.13 protein_coding + + chr20:25195693-25228075:+ chr20:25224157:+ chr20:25176329-25208711:+ chr20:25204793:+ APMAP ENSG00000101474.12 protein_coding - + chr20:24962925-24992751:- chr20:24985388:+ chr20:24943561-24973387:- chr20:24966024:+ chr20:25225086,chr20:25225084 chr20:24984284,chr20:24984272 NA NA chr20:25205722,chr20:25205720 chr20:24964920,chr20:24964908 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none GDA1/CD39_(nucleoside_phosphatase)_family(83%)| GDA1_CD39(92%)| 51 40 40 838 111 ENST00000376652.9 unknown downstream upstream duplicates(3),mismatches(7) CCCAGTTTCAAA...ACAGGGTTTCAGGGCAGAAAGCAG___CGGCAAGCCTGCACGAGCTGTGTGCTGCCAGAGTGTCAGAGGTCCTTCAAAACAGAGTGCACAGGACGGAGGAAGTGAAGCATGTGGACTTCTATGCTTTCTCCTACTATTACGACCTTGCAGCTGGTGTGGGCCTCATAG___ATGCGGAGAAGGGAGGCAGCCTGGTGGTGGGGGACTTCGAGATCGCAGCCAAGTACG|CACCTCTGCAGAGTGGCTGGGTTCTGCCACCAACCTGAGTGGGCAGGAAACAGAGCCTCCCCAGAGCCTCCAGAAACACAGCCCTACTGACACCCTGATCTTAACACAGTGAGACCTGCCCAGGACTTCTGGCCTACAAAAC RVSGQKAAASLHELCAARVSEVLQNRVHRTEEVKHVDFYAFSYYYDLAAGVGLIDAEKGGSLVVGDFEIAAKY|aplqsgwvlppt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25242 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2323 TRUE 4264 TRUE 1616 TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121942534:+ chr12:122356498-122441833:+ chr12:122380440:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none TMPIT-like_protein(4%)| TMPIT(0%)| 23 39 38 144 99 ENST00000449592.7 ENST00000288912.9 downstream upstream duplicates(4),mismatches(1) GCGGGCGTGGGGCGCTGGGGGGCCGGTCGGGCAGCGCTGCGGGAGCAGCCGCCGGCACCGCCGCCTTGCACCATCGCATCATGTCCGGGCAGCTGGAGCGTTGCGAGCGCGAATGGCACGAGCTGGAGGGAGAATTTCAAGAACTGCAG|TATTCCTGTGCACACAATATTTGACAGCTGCCCTGAAGGGAATGGCATCATGGCCATGGCCATGACCCACGACGCCAAGTATCTGGCAACCATCTCAGATGCTGAAGTCCAG___AAGGTATGCATCTGGAAGTGGACTTTGGCAGTGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTACGGTGTTCAG___AACTACGTTACTTTTAAC MSGQLERCEREWHELEGEFQELQ|yscahni* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25243 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4264 TRUE 1616 TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121942895:+ chr12:122356498-122441833:+ chr12:122380801:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none TMPIT-like_protein(4%)| TMPIT(0%)| 3 2 19 144 103 ENST00000449592.7 ENST00000288912.9 downstream upstream duplicates(2) GCGCGCGGGCGTGGGGCGCTGGGGGGCCGGTCGGGCAGCGCTGCGGGAGCAGCCGCCGGCACCGCCGCCTTGCACCATCGCATCATGTCCGGGCAGCTGGAGCGTTGCGAGCGCGAATGGCACGAGCTGGAGGGAGAATTTCAAGAACTGCAG|AAGGTATGCATCTGGAAGTGGACTTTGGCAGTGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTACGGTGTTCAG___AACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTAAAACAC...___TATGAAGAGA...___ACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAAT MSGQLERCEREWHELEGEFQELQ|KVCIWKWTLAVETPACTLELPTEYGVQNYVTFNPTNNKELVSNSKT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25244 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4264 TRUE 1616 TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121948984:+ chr12:122356498-122441833:+ chr12:122386890:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none TMPIT-like_protein(4%)| TMPIT(0%)| 1 0 5 144 51 ENST00000449592.7 ENST00000288912.9 downstream upstream none GCGCGCGGGCGTGGGGCGCTGGGGGGCCGGTCGGGCAGCGCTGCGGGAGCAGCCGCCGGCACCGCCGCCTTGCACCATCGCATCATGTCCGGGCAGCTGGAGCGTTGCGAGCGCGAATGGCACGAGCTGGAGGGAGAATTTCAAGAACTGCAG|AACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTAAAACACaGGCAATATATTATGCATGG___TATGAAGAGAGGGATACACTGGCTCACAGTGCCCCACTTTTAACTGAAAAA___ACCTTCAACAAGCTTGTGGGAAAGTTT MSGQLERCEREWHELEGEFQELQ|NYVTFNPTNNKELVSNSKTqAIYYAWYEERDTLAHSAPLLTEKTFNKLVGK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25245 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4264 TRUE 1616 TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121957074:+ chr12:122356498-122441833:+ chr12:122394980:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none TMPIT-like_protein(4%)| TMPIT(0%)| 0 1 0 144 83 ENST00000449592.7 ENST00000288912.9 downstream upstream none GTTGCGAGCGCGAATGGCACGAGCTGGAGGGAGAATTTCAAGAACTGCAG|CTACATTGTCACAGGTGACATTAAGGGGAACATTAAGTTCTATGATCACACCCTGTCTATTGTTAACTGGTACAGTCACTTGAAACTGGG CEREWHELEGEFQELQ|lhchr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25246 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4264 TRUE 1616 TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121955699:+ chr12:122356498-122441833:+ chr12:122393605:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none TMPIT-like_protein(4%)| TMPIT(0%)| 0 1 0 144 8 ENST00000449592.7 ENST00000543211.5 downstream upstream none GGAGAATTTCAAGAACTGCAG|GGGAACAATGAGGTCTTGACATGGTTTTACAAAGAGAAATGCAAATTGTCACCCTCACTCAGTGGAGCGAGAAGATAGGAGAACTGCAGTTGGCCATGCAATCAACCTTTAATCGGTTGGGGTTTtGGATCCAGTGGAGACCAGGCCTGGGTTCTCCAAGTTAAT GEFQELQ|gnnevltwfykekcklspslsgarr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25249 TRPC4AP::BLCAP ENSG00000100991.12::ENSG00000166619.15 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4265 TRUE 1617 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- BLCAP ENSG00000166619.15 protein_coding - - chr20:37492472-37527931:- chr20:37501292:- chr20:36120874-36156333:- chr20:36129694:- chr20:35027967,chr20:35027971 chr20:37501410,chr20:37501411 NA NA chr20:33615770,chr20:33615774 chr20:36129812,chr20:36129813 NA NA sense sense out-of-frame CDS/splice-site exon duplication high none none none 20 23 20 1790 67 ENST00000252015.3 ENST00000613961.1 upstream downstream duplicates(3),mismatches(6) GACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG___CGGCCCTTCTCAGCATTCCTGGCTTTGTTGAGCGGCTTTGCAAACTGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACACATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAAG|GTACATTTTATAATCAGCTTGTCAAAGTTCTGTGAACAAAATGTCTGTTGGAAGTTTGAGAAGAATTGCATTGAAGGGGAAATTAACATCTTTAGAATATAAGTTCTTCCCATCTGTGGACATGGTGTCTGT DKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ|gtfynqlvkvl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25250 TRPC4AP::BLCAP ENSG00000100991.12::ENSG00000166619.15 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4265 TRUE 1617 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- BLCAP ENSG00000166619.15 protein_coding - - chr20:37492472-37527931:- chr20:37495692:- chr20:36120874-36156333:- chr20:36124094:- chr20:35027967,chr20:35027971 chr20:37501410,chr20:37501411 NA NA chr20:33615770,chr20:33615774 chr20:36129812,chr20:36129813 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 2 1 3 1790 53 ENST00000252015.3 ENST00000411780.1 upstream downstream duplicates(1) CCGGCCGCGGCCTGGTAACATTCTGCTGCAGCTGCGGCAGGGCCAGCTGACCGGCCGGGGCCTGGTCCGGGCGGTGCAG___TTCACTGAGACTTTTTTGACGG...CAGGGAATGATGACAAGCACACGCTTCTTGCCAAAAATGCTCAACAGAAGAAGAGCTTGAGTTTGGGGCCTTCTGCAGCTGAAATCAATCAAG___CGGCCCTT...TGCAAACTGGCGACTCGAAAGGTGTCAGAGTCAACGGGCACAGCCAGCTTCCTTCAGGAGTTGGAAGAGTGGTACACATGGCTAGACAATGCTTTGGTGCTAGATGCCCTGATGCGAGTGGCCAATGAGGAGTCAGAGCACAATCAAG|CCACTTTTAGGTGATATATTACGTTCTGGTGAAAGCATTCTTCCTAATACAAGCTGAGAGCTTACAGCTAGGAGACAACCTCCAGGAGCAGAGATCACACACTCTCGG___GGTCTTTCTGTGTCATCTAGCCGGAGTACAGTGGC CKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQ|atfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25251 SLC25A40::ADAM22 ENSG00000075303.13::ENSG00000008277.15 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A40 ENSG00000075303.13 protein_coding - - chr7:87833568-87876360:- chr7:87846949:- chr7:87462883-87505675:- chr7:87476264:- ADAM22 ENSG00000008277.15 protein_coding + - chr7:87934143-88202889:+ chr7:88043143:- chr7:87563458-87832204:+ chr7:87672458:- chr7:87844246 chr7:88054264 NA NA chr7:87473561 chr7:87683579 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Mitochondrial_carrier_protein(62%)| Mito_carr(45%)| 10 30 21 171 42 ENST00000341119.10 unknown upstream downstream duplicates(4),mismatches(2) AGAAAATGAAACCTGCATACCAATTGTTGCTGGAATTGTAGCCAGAT___TTGGTGCAGTAACTGTGATAAGTCCACTAGAATTGATTAGAACCAAGATGCAGTCCAAGAAGTTTTCTTACGTGGAACTGCATCGATTTGTCAGCAAGAAAGTATCTGAAGATGGTTGGATTTCCCTTTGGAGGGGCTGGGCTCCTACTGTTCTTAGAGATGTACCTTTCTCAG|TCACTTCCCTGAGATCTATGTTTCAAAGAAGAAACAGCAATATTGTTTGAAGCTGCAGATTTGAAATGGGCAGCTAGCATCAAACCCTCAAAGAACAGAGAAAATAGGTAAGCTAATTGAAAGGTCACCATTGC...___AGAAATGCTAAGTCAATGGAGAGAAATGAAGACTGAATGTGCATGTGAGTAAAGG ENETCIPIVAGIVARFGAVTVISPLELIRTKMQSKKFSYVELHRFVSKKVSEDGWISLWRGWAPTVLRDVPFS|vtslrsmfqrrnsniv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25252 ECT2::FNDC3B ENSG00000114346.14::ENSG00000075420.13 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2324 FALSE NA FALSE NA ECT2 ENSG00000114346.14 protein_coding + + chr3:172750682-172821474:+ chr3:172805869:+ chr3:172468472-172539264:+ chr3:172523659:+ FNDC3B ENSG00000075420.13 protein_coding + + chr3:172039578-172401669:+ chr3:172397164:+ chr3:171757368-172119459:+ chr3:172114954:+ chr3:172806723,chr3:172806817,chr3:172806724,chr3:172806691 chr3:172389661,chr3:172389694,chr3:172389659,chr3:172389718 NA NA chr3:172524513,chr3:172524607,chr3:172524514,chr3:172524481 chr3:172107451,chr3:172107484,chr3:172107449,chr3:172107508 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BRCA1_C_Terminus_(BRCT)_domain(100%),RhoGEF_domain(100%),twin_BRCT_domain(100%)|Fibronectin_type_III_domain(4%) BRCT(100%),PTCB-BRCT(100%),RhoGEF(100%)|fn3(0%) 14 25 20 778 263 ENST00000232458.9 ENST00000415807.7 downstream upstream duplicates(1),mismatches(1) AGGAGAACAAGTAACTCTCTTCCTCTTCAATGATTGCCTAGAG___ATAGCAAGAAAACGGCACAAGGTTATTGGCACTTTTAGGAGTCCTCATGGCCAAACCCGACCCCCAGCTTCTCTTAAGCATATTCACCTAATGCCTCTTTCTCAGATTAAGAAGGTATTGGACATAAGAGAGACAGAAG|GTGTACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGACCAACACAGACTACAGGTTCCGCGTATGTGCGTGTCGTCGCTGTTTAGACACCTCTCAGGAGCTAAGCGGAGCCTTCAGCCCCTCTGCGGCTTTTGTATTACAACGAAGTGAGGTCATGCTTACAGGGGACATGGGGAGCTTAGATGATCCCAAAATGAAG GEQVTLFLFNDCLEIARKRHKVIGTFRSPHGQTRPPASLKHIHLMPLSQIKKVLDIRETE|gvqgrrshipnlrppdqhrlqvprmcvsslfrhlsgakrslqplcgfcittk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25260 DGCR2::CCDC197 ENSG00000070413.20::ENSG00000175699.15 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DGCR2 ENSG00000070413.20 protein_coding - - chr22:19036282-19122454:- chr22:19041807:- chr22:19023795-19109967:- chr22:19029320:- CCDC197 ENSG00000175699.15 protein_coding + - chr14:93987225-94008863:+ chr14:94005529:- chr14:94453571-94475209:+ chr14:94471875:- chr22:19041435,chr22:19041437 chr14:94008739,chr14:94008738 NA NA chr22:19028948,chr22:19028950 chr14:94475085,chr14:94475084 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Lectin_C-type_domain(100%),Low-density_lipoprotein_receptor_domain_class_A(100%)| Ldl_recept_a(100%),Lectin_C(100%)| 18 13 21 160 28 ENST00000537045.5 unknown upstream downstream duplicates(1),mismatches(11) CTGCTCTCTGTGAGAGGCCCCAGGGCTGCCAACAGTACCGCAAGGACCCCAAAGAGTGCTGCAAGTTCATGTGTCTGGACCCAG___ATGGCAACAGTCTGTTTGACTCCATGGCCAGCGGGATGCGCCTGGTCGTCAGCTGCATCTCCTCCTTCCTCATCCTGTCACTGCTGCTCTTCATGGTCCACCGGCTGCGCCAGCGGCGCCGGGAGCGCATCGAGTCCCTGATTGGAGCAAACT|TAACAGCATCCTGACTGATGGGGGCGGTGAGGAAAGAAGCCCAGTGGACTGACAGTGTGAAGTTTAAGGTGAGGACCCTGTGCAAGAGGCTCCCTCAGTCACTGAAATGCCCGCTGCCAGCGTTCTCATATGT___GCTGAAAGACTGGACTCACATTATAGCTGCTGCTGGTGTGTGTGTCAAAG ALCERPQGCQQYRKDPKECCKFMCLDPDGNSLFDSMASGMRLVVSCISSFLILSLLLFMVHRLRQRRRERIESLIGAN|ltas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25261 PIGU::FER1L4 ENSG00000101464.11::ENSG00000088340.17 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PIGU ENSG00000101464.11 protein_coding - - chr20:34560542-34698790:- chr20:34575104:- chr20:33148346-33286594:- chr20:33162908:- FER1L4 ENSG00000088340.17 transcribed_unitary_pseudogene - - chr20:35558737-35607562:- chr20:35565227:- chr20:34146507-34195484:- chr20:34153143:- chr20:34572669,chr20:34572678 chr20:35568330,chr20:35568336 NA NA chr20:33160473,chr20:33160482 chr20:34156249,chr20:34156255 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none GPI_transamidase_subunit_PIG-U(100%)| PIG-U(100%)| 17 11 17 1440 22 ENST00000217446.8 ENST00000615531.4 upstream downstream duplicates(2),mismatches(1) GAGCACCCCATCTTCTTCATGTTTATCCAGATCGCTGTCATCGCCATCTTTAAGTCCTACCCGACAGTGGGGGACGTGGCGCTCTACATGGCCTTCTTCCCCGTGTGGAACCATCTCTACAGAT___TCCTGAGAAACATCTTTGTCCTCACCTGCATCATCATCGTCTGTTCCCTGCTCTTCCCTGTCCTGTGGCACCTCTGGATTTATGCAGGAAGTGCCAACTCTAATTTCTTTTATGCCATCACACTGACCTTCAACGTTGGGCAG|GCTACCAACCTGGCTCCTGCAGACCCCAATGGCAAAGCAGACCCTTACGTGGTGGTGAGCGCTGGCCGGGAGCGGCAGGACACCAAGGAACGCTACATCCCCAAGCAGCTCAACCCCATCTTTGGAGA___GATCCTGGAGCTAAGCATCTCTCTCCCAGCTGAGACGGAGCTGACG EHPIFFMFIQIAVIAIFKSYPTVGDVALYMAFFPVWNHLYRFLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQ|atnlapadpngkadpyvvvsagrerqdtkeryipkqlnpifgeilelsislpaetel NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25267 RALGPS1::ENG ENSG00000136828.19::ENSG00000106991.14 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2328 FALSE NA FALSE NA RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:126977745:+ chr9:129677053-129985445:+ chr9:129740024:+ ENG ENSG00000106991.14 protein_coding - - chr9:127815013-127854658:- chr9:127829827:- chr9:130577292-130616937:- chr9:130592106:- chr9:126991476,chr9:126991472,chr9:126991387 chr9:127833277,chr9:127833281,chr9:127833539 NA NA chr9:129753755,chr9:129753751,chr9:129753666 chr9:130595556,chr9:130595560,chr9:130595818 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none RasGEF_domain(11%)|Zona_pellucida-like_domain(100%) RasGEF(5%)|Zona_pellucida(100%) 8 11 14 17 63 ENST00000259351.10 ENST00000373203.9 downstream downstream duplicates(1),mismatches(1),multimappers(1) AGCAGCTCGGACTCTCTGGAGGGCCAGAGCTGCGACTATGCCAGCAAGAGCTATGATGCCGTTGTCTTCGATGTCTTGAAAGTGACCCCAGAGGAGTTTGCT___AGCCAGATTACATTAATGGATATACCTGTGTTTAAAGCTATCCAGCCGGAG|GGCCCGTCACAGCTGGAGCTGACTCTCCAGGCATCCAAGCAAAATGGCACCTGGCCCCGAGAGGTGCTTCTGGTCCTCAGTGTAAACAGCAGTGTCTTCCTGCATCTCCAGGCCCTGGGAATCCCACTGCACTTGGCCTAC___AATTCCAGCCTGGTCACCTTCCAAGAGCCCCCGGGGGTCAACACCACAGAGCTGCCATCCTTCCCCAAGACCCAGATCCTTGAGTGGGCAGCTGAGAGGGGCCCCATCACCTCTGCTGCTGAGCTGAATGACCCCCAGAGCATCCTCCTCCGACTGGGCCAAG___CCCAGGGGTCACTGTCCTTCTGC SSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQPE|GPSQLELTLQASKQNGTWPREVLLVLSVNSSVFLHLQALGIPLHLAYNSSLVTFQEPPGVNTTELPSFPKTQILEWAAERGPITSAAELNDPQSILLRLGQAQGSLSF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25268 ELL::ENSG00000268184 ENSG00000105656.13::ENSG00000268184.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4268 TRUE 1618 ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18521921:- chr19:18553473-18632926:- chr19:18632731:- ENSG00000268184 ENSG00000268184.1 lncRNA - - chr19:21768772-21793860:- chr19:21769127:- chr19:21951574-21976662:- chr19:21951929:- chr19:18475711,chr19:18475713,chr19:18475719 chr19:21793256,chr19:21793255,chr19:21793255 NA NA chr19:18586521,chr19:18586523,chr19:18586529 chr19:21976058,chr19:21976057,chr19:21976057 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none RNA_polymerase_II_elongation_factor_ELL__(13%)| ELL(0%)| 14 10 9 540 33 ENST00000594635.6 ENST00000598561.1 upstream downstream duplicates(1),low_entropy(2),mismatches(14) CGCTGAAGGAGGATAGGAGCTACGGGCTGTCGTGCGGGCGGGTTAGCGACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGCCTTCGAGAGCTACCGCGCCAGACAG|AATGCTGCCATCTCCATGAATAATGCCCATGTTAGCCAGCTGGAAAATAAGATACCATGAgGAGGAGAAGCAAGGTGCCCCTGTTGACAGACCCAGGAGCAGAAGCTCACCCCCAGATGCACAGCTGTCTAGTCAAAAAGCAGG...___GGGCCTAGCCTGTGTGGCCCTCTGACCTGCAGATATTGGGAGA LKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQ|naaismnnahvsqlenkip* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25269 ELL::ENSG00000268184 ENSG00000105656.13::ENSG00000268184.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4268 TRUE 1618 ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18475814:- chr19:18553473-18632926:- chr19:18586624:- ENSG00000268184 ENSG00000268184.1 lncRNA - - chr19:21768772-21793860:- chr19:21769127:- chr19:21951574-21976662:- chr19:21951929:- chr19:18475711,chr19:18475713,chr19:18475719 chr19:21793256,chr19:21793255,chr19:21793255 NA NA chr19:18586521,chr19:18586523,chr19:18586529 chr19:21976058,chr19:21976057,chr19:21976057 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site duplication high none RNA_polymerase_II_elongation_factor_ELL__(13%)| ELL(65%)| 1 0 12 24 33 ENST00000596124.3 ENST00000598561.1 upstream downstream duplicates(1),mismatches(3) CTGAAGGAGGATAGGAGCTACGGGCTGTCGTGCGGGCGGGTTAGCGACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGC...CGAGAGaTACCGCGCCAGACAG___AACTCGCCGTGTGTGTGTCAGAGAATGTTGCTCCTGTGCCCTGAGTCAACAAAGACGGCCCCTGTGAGCTCAAGGGCAGTTGGGAAGGTGTAGCGAACATCCTGTAAAACGTCCCATCTT|AATGCTGCCATCTCCATGAATAATGCCCATGTTAGCCAGCTGGAAAATAAGATACCATGAgGAGGAGAAGCAAGGTGCCCCTGTTGACAGACCCAGGAGCAGAAGCTCACCCCCAGATGCACAGCTGTCTAGTCAAAAAGCAGGTGATGATACATGTCTGAAGGAGCTCAGCTGAGACCAGAAGAATGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25278 FDXR::GARNL3 ENSG00000161513.12::ENSG00000136895.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2331 FALSE NA FALSE NA FDXR ENSG00000161513.12 protein_coding - - chr17:74862497-74873031:- chr17:74872036:- chr17:72858619-72869156:- chr17:72868161:- GARNL3 ENSG00000136895.19 protein_coding + + chr9:127224265-127393660:+ chr9:127311636:+ chr9:129986544-130155939:+ chr9:130073915:+ chr17:74870863,chr17:74870866,chr17:74870931 chr9:127299041,chr9:127299038,chr9:127299072 NA NA chr17:72866988,chr17:72866991,chr17:72867056 chr9:130061320,chr9:130061317,chr9:130061351 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none NAD(P)-binding_Rossmann-like_domain(40%),Pyridine_nucleotide-disulphide_oxidoreductase(19%)|CNH_domain(100%),Rap/ran-GAP(100%) NAD_binding_8(0%),Pyr_redox_2(0%)|CNH(100%),Rap_GAP(100%) 12 4 5 110 13 ENST00000293195.10 ENST00000435213.6 upstream upstream mismatches(2) CCCAGCCATGGCTTCGCGCTGCTGGCGCTGGTGGGGCTGGTCGGCGTGGCCTCGGACCCGGCTGCCTCCCGCCGGGAGCACCCCGA___GCTTCTGCCACCATTTCTCCACACAGGAGAAGACCCCCCAGATCTGTGTGGTGGGCAGTGGCCCAGCTGGCTTCTACACGGCCCAACACCTGCTAAAG|AATGCAACTGCCCTGCCTGGTACTTGGCGAAGAACAGACGTGCACTTAGAGAACCCAGAATACCACACCAGATGGTATTTCAAATATTTTTTAGGACAAG___TCCATCAGAACTACATTGGAAACGATGCCGAGAAG MASRCWRWWGWSAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVVGSGPAGFYTAQHLLK|NATALPGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25281 CERT1::POLK ENSG00000113163.19::ENSG00000122008.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CERT1 ENSG00000113163.19 protein_coding - - chr5:75356345-75512138:- chr5:75505982:- chr5:74652170-74807963:- chr5:74801807:- POLK ENSG00000122008.16 protein_coding + - chr5:75511845-75609991:+ chr5:75579167:- chr5:74807670-74905816:+ chr5:74874992:- chr5:75472095,chr5:75472099 chr5:75608930,chr5:75608931 NA NA chr5:74767920,chr5:74767924 chr5:74904755,chr5:74904756 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none PH_domain(58%)| PH(9%),PH_8(0%)| 4 3 11 147 5 ENST00000644912.1 unknown upstream downstream duplicates(2),mismatches(1) CAGAGACGGAGTCTGGGCCGCCTGTGGAGCGCTGCGGGGTCCTCAGTAAG___TGGACAAACTACATTCATGGGTGGCAGGATCGTTGGGTAGTTTTGAAAAATAATGCTCTGAGTTACTACAAATCTGAAGATGAAACAGAGTATGGCTGCAGAGGATCCATCTGTCTTAGCAAGGCTGTCATCACA|GTGAGCCACTGTGAGAGCAGAACTATACAGCAGGAAGTGAAGAATGCTGCCTTCTCACACATTATCAGAGCTGCTGCAGAATGTTCAG___AGACAGGATCTTGCTTTGTCACCCAGGTTGGAGTGCGGCAGCACAATCATAGCTCACTGTAACCTCGAACTTCTAGGCTTAAGTGATCCTTCTGACTCAGCCTCCAGAGCAGGT ETESGPPVERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVIT|vshcesrtiqqevknaafshiiraaaecsetgscfvtqvgvrqhnhssl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Collagen type IV alpha-3-binding protein Atypical Col4A3BP Q9Y5P4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25285 SNED1::ANKMY1 ENSG00000162804.15::ENSG00000144504.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SNED1 ENSG00000162804.15 protein_coding + + chr2:240998618-241095568:+ chr2:241071878:+ chr2:241938035-242034983:+ chr2:242011293:+ ANKMY1 ENSG00000144504.16 protein_coding - + chr2:240479422-240569209:- chr2:240497043:+ chr2:241418839-241508626:- chr2:241436460:+ chr2:241079498,chr2:241079494 chr2:240488957,chr2:240488957 NA NA chr2:242018913,chr2:242018909 chr2:241428374,chr2:241428374 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none EGF-like_domain(90%),Fibronectin_type_III_domain(100%),Human_growth_factor-like_EGF(100%),Nidogen-like(100%)| EGF(98%),EGF_CA(100%),NIDO(100%),fn3(100%),hEGF(100%)| 1 10 3 45 29 ENST00000310397.13 unknown downstream upstream mismatches(1) CAGGTTCTCGGAGCTTGTGGACGGCAGAGGAAGAGTGAGCGCCAGGTTCGGTGGCTCACCCAGCAAAGCAGCCACCGTGAGATCAC|TAATTCTGAGTGCACCACTTCCTGGCCATCTTGGAAGCTGAGGATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGCATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGCATAAGAATGGAGCCGCCACCTCCTCGCCATCTTGGAAGCTGAGGATAAGAATGGAGCTGCCACCTCCTCCCCATCTTGGAAGCTGAGCATAAGAATGGTGCCGCCACCTCCTGGCCATCTTGGAAGCACAGTAAGTCTGAAGCAACAGG RFSELVDGRGRVSARFGGSPSKAATVRS|lilsaplpghlgs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25293 PCNX1::RAD51B ENSG00000100731.16::ENSG00000182185.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2333 TRUE 4273 TRUE 1619 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:70978648:+ chr14:71374122-71582099:+ chr14:71445365:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68594485:+ chr14:68286496-69196935:+ chr14:69061202:+ chr14:70983656,chr14:70983655 chr14:68579721,chr14:68579717 NA NA chr14:71450373,chr14:71450372 chr14:69046438,chr14:69046434 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 3 1 4 107 11 ENST00000304743.7 ENST00000487270.5 downstream upstream duplicates(1) GCCAAGACTCGTGCCCGAGTGTTGAGCCTGGACAGTGGCACAGTAGCATGTTTGAATGACTCAAACAGGTTAATGGCACCTGAAAGTATAAAGCCCTTAAC...CTTGAGGCCAAAGAGGGAGAGGTGCTAGATGAGCTATCTTTATTAGGACGGGCTTCCCAGTTAGAGACAGTCACTCGATCTAGGAATAGCTTGCCAAACCAGGTTGCATTTCCTGAAGGGGAAGAGCAAGATGCAGTCAGTGGAG|AGACAACATTTTGCTCTGTCACCCAAGCTGAACTGAACTGGGCTCCAGAAATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATGTGCCACCATACCCAGCTAATTTTTTAATTTTTTGTAGAGGTGGGGTCTCATTATGTTGCCCAAGCTGATCTCAAACTCCTGGCTTCAAGAGATCCACCCACCTCAGCCTCCCAAAGCGCTAGG...GAGAATTTTGTCCTTAGCAATCTCATCCAATGGCCACTGGAGATGTGTGTAGGGCCACAAGAATGAGAAAGGGGGCAATGGAGTGACAGGTGACCTGCTCA LEAKEGEVLDELSLLGRASQLETVTRSRNSLPNQVAFPEGEEQDAVSG|eTTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oral_cavity no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 25294 PCNX1::RAD51B ENSG00000100731.16::ENSG00000182185.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4273 TRUE 1619 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:70978648:+ chr14:71374122-71582099:+ chr14:71445365:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68611006:+ chr14:68286496-69196935:+ chr14:69077723:+ chr14:70983656,chr14:70983655 chr14:68579721,chr14:68579717 NA NA chr14:71450373,chr14:71450372 chr14:69046438,chr14:69046434 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none none none 1 2 0 107 5 ENST00000304743.7 ENST00000487861.5 downstream upstream none GCCAAGACTCGTGCCCGAGTGTTGAGCCTGGACAGTGGCACAGTAGCATGTTTGAATGACTCAAACAGGTTAATGGCACCTGAAAGTATAAAGCCCTTAAC...GCCAAACCAGGTTGCATTTCCTGAAGGGGAAGAGCAAGATGCAGTCAGTGGAG|TTGTTAGAACTGTGGCCAGAGTCAGCCCCAGGTCAGAATGCTGGTCAGCAGCAGACTCACATCCCAGCCCTACCTTCCTGATACCTGATGTGGTGCTCAGAAAAACAAGGAATCCCAGGCTGTT PNQVAFPEGEEQDAVSG|vVRTVARVSPRSECWSAADSHPSPTFLIPDVVLRKTRNPRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oral_cavity no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 25295 PCNX1::RAD51B ENSG00000100731.16::ENSG00000182185.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4273 TRUE 1619 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:70978648:+ chr14:71374122-71582099:+ chr14:71445365:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68682937:+ chr14:68286496-69196935:+ chr14:69149654:+ chr14:70983656,chr14:70983655 chr14:68579721,chr14:68579717 NA NA chr14:71450373,chr14:71450372 chr14:69046438,chr14:69046434 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 2 1 0 107 8 ENST00000304743.7 ENST00000553595.5 downstream upstream none CCCAGTTAGAGACAGTCACTCGATCTAGGAATAGCTTGCCAAACCAGGTTGCATTTCCTGAAGGGGAAGAGCAAGATGCAGTCAGTGGAG|GGCAGTAAACAAGAGCTCTGAAAGGGGAAGGAAGCCAGGAGAAAGCCAGCTCCATTAGTCACGCAGCAGCATATCCTGTCACAAAGGtCCCCAGTTGAGTAATCGCCCAAAA QLETVTRSRNSLPNQVAFPEGEEQDAVSG|gq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oral_cavity no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 25296 PCNX1::RAD51B ENSG00000100731.16::ENSG00000182185.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4273 TRUE 1619 PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:70978648:+ chr14:71374122-71582099:+ chr14:71445365:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68729808:+ chr14:68286496-69196935:+ chr14:69196525:+ chr14:70983656,chr14:70983655 chr14:68579721,chr14:68579717 NA NA chr14:71450373,chr14:71450372 chr14:69046438,chr14:69046434 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none none none 2 0 0 107 3 ENST00000304743.7 ENST00000488612.5 downstream upstream none CCAAGACTCGTGCCCGAGTGTTGAGCCTGGACAGTGGCACAGTAGCATGTTTGAATGACTCAAACAGGTTAATGGCACCTGAAAGTATAAAGCCCTTAACCACTTCAAAATCAGATCTTGAGGCCAAAGAGGGAGAGGTGCT...AGGAATAGCTTGCCAAACCAGGTTGCATTTCCTGAAGGGGAAGAGCAAGATGCAGTCAGTGGAG|ATGAGACCCACCCATCGGAGCCAGGCTTTGAAGGAACTGAC RNSLPNQVAFPEGEEQDAVSG|dethpsepgfegt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oral_cavity no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 25297 ENSG00000288871::MRTFA ENSG00000288871.2::ENSG00000196588.21 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000288871 ENSG00000288871.2 lncRNA + + chr22:50244637-50247014:+ chr22:50245518:+ chr22:50683066-50685443:+ chr22:50683947:+ MRTFA ENSG00000196588.21 protein_coding - - chr22:40410281-40636719:- chr22:40463286:- chr22:40806285-41032723:- chr22:40859290:- NA NA NA NA NA NA NA NA sense sense unknown exon CDS/splice-site inversion high none |RPEL_repeat(100%),SAP_domain(100%) |RPEL(100%),SAP(100%) 0 2 6 1 28 ENST00000685176.2 ENST00000355630.10 downstream downstream none TCCGTGCCCCAGAGTCGAGGGAGCCGTGGGCTTGGGGTCCGGATCGCGGCCGCGGGGCGCTGGCGTGCGGTGTCATTTCTGCGGTGTAAATGCTCCCACCTTGGCCGATTTCAAGCCACCAG|TGCTACAGTTGAAACTCCAGCAGCGCCGGACCCGGGAAGAACTGGTGAGCCAAGGGATCATGCCGC___CTTTGAAAAGTCCAGCCGCATTTCATGAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE megakaryoblastic leukemia (translocation) 1 1 acute megakaryocytic leukaemia leukaemia_lymphoma oncogene, TSG, fusion translocation 25299 PGS1::FBF1 ENSG00000087157.19::ENSG00000188878.20 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PGS1 ENSG00000087157.19 protein_coding + + chr17:78378649-78425114:+ chr17:78419675:+ chr17:76374730-76421195:+ chr17:76415756:+ FBF1 ENSG00000188878.20 protein_coding - + chr17:75909574-75941140:- chr17:75937750:+ chr17:73905655-73937221:- chr17:73933831:+ chr17:78421785 chr17:75935259 NA NA chr17:76417866 chr17:73931340 NA NA sense antisense stop-codon CDS/splice-site 3'UTR duplication/5'-5' high none none none 0 2 5 764 36 ENST00000589426.5 unknown downstream upstream multimappers(1) GCCAAAG___GTCAGTTCACCGGGACCTGGAGGCCCAGATTGCGATCGTGACGGAGAACCAGGCCCTGCAGCAGCAGCTTCACCAG___GAGCAAGAGCAGCTCTACCTGAGGTCAGGTGTGGTGTCCTCTGCCACCTTCGAGCAGCCGAGTCGCCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCACTGATCAAGAACTTCTTCTGAGGACAGACAG|TTTCTGAGAACGGACTCATTCAGAGCGTGGAAACAGCCCTGCTAACCAGCGATGGGTGCCAATGGGCGGGCAGGTCACTCCTTTCCCAGACACGACATGCAAACCCTCCCAGCCGAGATGTCATGTGACCGGAAATGTCTTCTATTCCGTGCCCCTGACTCCTCAATACCAGTGACAGACACTTAAAAACGCTTCCAGCTGGACACTCAGAGTCTCAGAAGAAACCTTGGTCGTCGAAAGTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25307 HDAC10::MRTFA ENSG00000100429.18::ENSG00000196588.21 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA HDAC10 ENSG00000100429.18 protein_coding - + chr22:50245183-50251405:- chr22:50245518:+ chr22:50683612-50689834:- chr22:50683947:+ MRTFA ENSG00000196588.21 protein_coding - - chr22:40410281-40636719:- chr22:40463286:- chr22:40806285-41032723:- chr22:40859290:- NA NA NA NA NA NA NA NA antisense sense unknown CDS CDS/splice-site inversion/3'-3' high none |RPEL_repeat(100%),SAP_domain(100%) |RPEL(100%),SAP(100%) 0 2 1 1 28 unknown ENST00000355630.10 downstream downstream none TCCGTGCCCCAGAGTCGAGGGAGCCGTGGGCTTGGGGTCCGGATCGCGGCCGCGGGGCGCTGGCGTGCGGTGTCATTTCTGCGGTGTAAATGCTCCCACCTTGGCCGATTTCAAGCCACCAG|TGCTACAGTTGAAACTCCAGCAGCGCCGGACCCGGGAAGAACTGGTGAGCCAAGGGATCATGCCGC___CTTTGAAAAGTCCAGCCGCATTTCATGAGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE megakaryoblastic leukemia (translocation) 1 1 acute megakaryocytic leukaemia leukaemia_lymphoma oncogene, TSG, fusion translocation 25313 CD109::ENSG00000243501 ENSG00000156535.15::ENSG00000243501.5 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CD109 ENSG00000156535.15 protein_coding + + chr6:73695785-73828316:+ chr6:73792802:+ chr6:74405508-74538040:+ chr6:74502525:+ ENSG00000243501 ENSG00000243501.5 protein_coding - + chr6:73209746-73263196:- chr6:73230906:+ chr6:73919469-73972919:- chr6:73940629:+ chr6:73797329,chr6:73797319 chr6:73223699,chr6:73223686 NA NA chr6:74507052,chr6:74507042 chr6:73933422,chr6:73933409 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none A-macroglobulin_TED_domain(21%),Alpha-2-macroglobulin_bait_region_domain(100%),Alpha-2-macroglobulin_family(100%),MG2_domain(100%),Macroglobulin_domain_MG3(100%)| A2M(100%),A2M_BRD(100%),MG2(100%),MG3(100%),TED_complement(18%)| 0 1 1 49 3 ENST00000422508.6 unknown downstream upstream none AAATTTTGCTCCAAATATTTACATTTTGGATTATCTGACTAAAAAGAAACAACTGACAGATAATTTGAAAGAAAAAGCTCTTTCATTTATGAGGCAAG|ACGGAGTTTCACTCTTGTTGCCCAGGATGCAGTACAATGGCGCGATCCCGGCTCACTGCAACCTCCTCCTCCCGGGTTCAACAGATTCTCC...ATTACAGACGCGTGCCACCACACCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTATCCATGTTGGTCAGGCTGGTCTCGAATTCGCGACCTCAGAC NFAPNIYILDYLTKKKQLTDNLKEKALSFMRQ|dgvslllprmqyngaipahcnlllpgstds NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25316 ELP2::MOCOS ENSG00000134759.14::ENSG00000075643.6 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36161004:+ chr18:33709407-33760520:+ chr18:33740967:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36193467:+ chr18:33767460-33852120:+ chr18:33773430:+ chr18:36164159,chr18:36164158 chr18:36192756,chr18:36192752 NA NA chr18:33744122,chr18:33744121 chr18:33772719,chr18:33772715 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through medium none WD_domain__G-beta_repeat(61%)|Aminotransferase_class-V(100%),MOSC_N-terminal_beta_barrel_domain(100%),MOSC_domain(100%) WD40(74%)|Aminotran_5(100%),MOSC(100%),MOSC_N(100%) 4 4 3 363 21 ENST00000358232.11 unknown downstream upstream duplicates(2),mismatches(1) CTGAATCATGTGCTCTGTAAT___CAAGATAGTGATCTTCCAGAAGGAGCCACTGTCCCTGCATTGGGATTATCAAATAAAGCTGTCTTTCAGG___...CTG___AGCCTCCCACTGAGGATCATCTTCTGCAGAATACTTTGTGGCCTGAAGTTCAAAAACT___ATATGGGCACGGTTATGAAATATTTTGTGTTACTTGTAACAGTTCAAAGACTCTGCTTGCCTCAGCTTGTAAG|ATACCAAGACTATTCAACGAGGGAAATAACTTCTTCAATAAGTGATATTGGGACAACTGGATATCAACATGCAAAAGAACGAACTTGGACCCCTACCTCATTCTGCATTCAAAAATTAACTCAATGGATCAAATACCTAAATATGAAACAGCTAAAAGTATAATATTCTTAGA EPPTEDHLLQNTLWPEVQKLYGHGYEIFCVTCNSSKTLLASACK|iprlfnegnnffnk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25320 PCBD2::DDX46 ENSG00000132570.15::ENSG00000145833.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4276 TRUE 1620 PCBD2 ENSG00000132570.15 protein_coding + + chr5:134905120-135007959:+ chr5:134910466:+ chr5:134240810-134343649:+ chr5:134246156:+ DDX46 ENSG00000145833.16 protein_coding + + chr5:134758771-134855133:+ chr5:134794850:+ chr5:134094461-134190823:+ chr5:134130540:+ chr5:134993084,chr5:134993027,chr5:134993081 chr5:134791612,chr5:134791562,chr5:134791606 NA NA chr5:134328774,chr5:134328717,chr5:134328771 chr5:134127302,chr5:134127252,chr5:134127296 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Pterin_4_alpha_carbinolamine_dehydratase(42%)|DEAD/DEAH_box_helicase(15%),Helicase_conserved_C-terminal_domain(100%) Pterin_4a(0%)|DEAD(0%),Helicase_C(100%) 1 3 3 223 772 ENST00000512783.5 ENST00000452510.7 downstream upstream none CGGCGGTGCTCGGGGCGCTCGGGGCGACGCGGCGCTTGTTGGCGGCGCTGCGAGGCCAGAGCCTAGGGCTAGCGGCCATG___TCATCAGGTACTCACAGGTTGACTGCAGAGGAGAGGAACCAAGCTATACTTGACCTTAAAGCAGCAGGATGGTCGGAATTAAGTGAGAGAGATGCCATCTACAAAGAATTCTCCTTCCACAATTTTAATCAG|GTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTG___ATTGTGATTGAAGAAGAAAAGAAATTCTTGAAGTTACTTGAGCTTCTAGGCCATTATCAAGAGTCAGG AVLGALGATRRLLAALRGQSLGLAAMSSGTHRLTAEERNQAILDLKAAGWSELSERDAIYKEFSFHNFNQ|VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQES NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25321 PCBD2::DDX46 ENSG00000132570.15::ENSG00000145833.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4276 TRUE 1620 PCBD2 ENSG00000132570.15 protein_coding + + chr5:134905120-135007959:+ chr5:134970092:+ chr5:134240810-134343649:+ chr5:134305782:+ DDX46 ENSG00000145833.16 protein_coding + + chr5:134758771-134855133:+ chr5:134794850:+ chr5:134094461-134190823:+ chr5:134130540:+ chr5:134993084,chr5:134993027,chr5:134993081 chr5:134791612,chr5:134791562,chr5:134791606 NA NA chr5:134328774,chr5:134328717,chr5:134328771 chr5:134127302,chr5:134127252,chr5:134127296 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none Pterin_4_alpha_carbinolamine_dehydratase(100%)|DEAD/DEAH_box_helicase(15%),Helicase_conserved_C-terminal_domain(100%) Ion_trans(0%),Pterin_4a(100%)|DEAD(0%),Helicase_C(100%) 1 1 4 17 772 ENST00000504352.1 ENST00000452510.7 downstream upstream mismappers(1) GAGAGAGATGCCATCTACAAAGAATTCTCCTTCCACAATTTTAATCAG___GAGGAACGATGATGAATGTCGGGCATTTGTGAAGAGAGTCATAATGAGCCGTTTCTTTAAGATAATTATGATTAGCACTGTCACATCGAATGCGTTTTTTATGGCCT...TATGACATAAGGTACCGCTTGTTCAGACTTCTTGAG|GTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAGGCAGGAGTGTGGTTTGCTCAGATGTGGAGCAACAAGTG___ATTGTGATTGAAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25328 ELL::ENSG00000234022 ENSG00000105656.13::ENSG00000234022.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18521921:- chr19:18553473-18632926:- chr19:18632731:- ENSG00000234022 ENSG00000234022.1 lncRNA + + chr2:15564170-15573868:+ chr2:15573484:+ chr2:15704294-15713992:+ chr2:15713608:+ chr19:18491286 chr2:15569096 NA NA chr19:18602096 chr2:15709220 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation medium none RNA_polymerase_II_elongation_factor_ELL__(13%)| ELL(0%)| 2 1 0 540 3 ENST00000594635.6 ENST00000438178.1 upstream upstream none GGGAGAGATGGTCGCAAGATGGCGGCGCTGAAGGAGGATAGGAGCTACGGGCTGTCGTGCGGGCGGGTTAGCGACGGCAGCAAGGTGTCGGTGTTCCACGTGAAGCTCACCGACAGTGCCCTGAGGGCCTTCGAGAGCTACCGCGCCAGACAG|GAGCTAGCAGGCAGTTCTTGTTGAGTTCAAGCCAGTTGAGACCATCAACCCTTCAACTGAGCCTGCATGG?TGC...ATACCGCGTGGTGTGCTCCGAACACATGGTGCCCAGAACGAAGGCGGCGTCCAGAAGCCCTAGGTCCCAGcGGTCCGCTCAGCGGCAGGCGCATAAGGCGG MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQ|elagssc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25330 LINC01473::FSIP2-AS1 ENSG00000237877.8::ENSG00000231646.6 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01473 ENSG00000237877.8 lncRNA - - chr2:186032884-186486005:- chr2:186215019:- chr2:186897611-187350732:- chr2:187079746:- FSIP2-AS1 ENSG00000231646.6 lncRNA - - chr2:185652374-185800151:- chr2:185757810:- chr2:186517101-186664878:- chr2:186622537:- chr2:186093401,chr2:186093407 chr2:185779541,chr2:185779544 NA NA chr2:186958128,chr2:186958134 chr2:186644268,chr2:186644271 NA NA sense sense unknown exon/splice-site intron deletion medium none none none 0 1 1 7 2 ENST00000667056.1 unknown upstream downstream none AAGGACATGTTTGCTTCCCTTTCCACCATGATTGCAAGTTTCCTGAGGCCTCCCTAGCCATGCTGAACT|GGTAATCTAAAAACCAAAATAAATGCCTTGAG...TTTCTGGGAATGAAAAAATACAAAGACAAGCTAAGAAGCTGGAGCAGGAAATTGACTTCAAACTCTGCTTGGAGAATCACCAGCTGCAAAACTGTATGGGGCAAATTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25331 LINC01473::FSIP2 ENSG00000237877.8::ENSG00000188738.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01473 ENSG00000237877.8 lncRNA - - chr2:186032884-186486005:- chr2:186215019:- chr2:186897611-187350732:- chr2:187079746:- FSIP2 ENSG00000188738.16 protein_coding + - chr2:185738804-185833290:+ chr2:185757810:- chr2:186603531-186698017:+ chr2:186622537:- chr2:186093401,chr2:186093407 chr2:185779541,chr2:185779544 NA NA chr2:186958128,chr2:186958134 chr2:186644268,chr2:186644271 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' medium none none none 0 1 1 7 2 ENST00000667056.1 unknown upstream downstream none AAGGACATGTTTGCTTCCCTTTCCACCATGATTGCAAGTTTCCTGAGGCCTCCCTAGCCATGCTGAACT|GGTAATCTAAAAACCAAAATAAATGCCTTGAG...TTTCTGGGAATGAAAAAATACAAAGACAAGCTAAGAAGCTGGAGCAGGAAATTGACTTCAAACTCTGCTTGGAGAATCACCAGCTGCAAAACTGTATGGGGCAAATTTCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25333 CATSPER3::DDX46 ENSG00000152705.8::ENSG00000145833.16 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CATSPER3 ENSG00000152705.8 protein_coding + + chr5:134967907-135011696:+ chr5:134970092:+ chr5:134303597-134347386:+ chr5:134305782:+ DDX46 ENSG00000145833.16 protein_coding + + chr5:134758771-134855133:+ chr5:134794850:+ chr5:134094461-134190823:+ chr5:134130540:+ chr5:134993084,chr5:134993027,chr5:134993081 chr5:134791612,chr5:134791562,chr5:134791606 NA NA chr5:134328774,chr5:134328717,chr5:134328771 chr5:134127302,chr5:134127252,chr5:134127296 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Ion_transport_protein(15%)|DEAD/DEAH_box_helicase(15%),Helicase_conserved_C-terminal_domain(100%) Ion_trans(0%)|DEAD(0%),Helicase_C(100%) 1 0 1 17 772 ENST00000282611.8 ENST00000452510.7 downstream upstream mismappers(1) GAGAGAGATGCCATCTACAAAGAATTCTCCTTCCACAATTTTAATCAG___GAGGAACGATGATGAATGTCGGGCATTTGTGAAGAGAGTCATAATGAGCCGTTTCTTTAAGATAATTATGATTAGCACTGTCACATCGAATGCGTTTTTTATGGCCT...TATGACATAAGGTACCGCTTGTTCAGACTTCTTGAG|GTCATGCGCATCGTGGATAATGTTCGTCCTGATCGACAGACGGTTATGTTTTCAGCTACTTTCCCCAGAGCTATGGAGGCTTTGGCTCGCAGGATCCTCAGTAAACCTATTGAAGTACAAGTTGGAG YDIRYRLFRLLE|VMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25338 GLCCI1::ICA1 ENSG00000106415.13::ENSG00000003147.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GLCCI1 ENSG00000106415.13 protein_coding + + chr7:7968796-8094272:+ chr7:8071131:+ chr7:8008427-8133902:+ chr7:8110761:+ ICA1 ENSG00000003147.19 protein_coding - + chr7:8113184-8262687:- chr7:8160006:+ chr7:8152814-8302317:- chr7:8199636:+ chr7:8078918 chr7:8152574 NA NA chr7:8118548 chr7:8192204 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Protein_Family_FAM117(73%)| FAM117(81%)| 1 2 1 38 4 ENST00000223145.10 unknown downstream upstream none GAAGTATCCAAG___...CAGGATGGTAGCCCTTGCTCAACAGAAGATTTGCTCTATGATCGTGATAAAG|GATACCAGGAGGGCATGGACCATGTCTACGTTGTTCATCATTATATTGCCTAGCAACCTGGCGCAAAGCAGGTACTGAATACGT...GCTGAATAAAGAAATTTTTCAAGCCATTGCAAAAG___ATCTGGGAAGATCAAAGATCAGTAGCCACCCAGTTCCTTTCAAACTGACCATACCATGAGCTGGACGGTTCTCCACTGCAGAGCAAA...TAAATTCCCTGGGAcCTCTGACTATAAAAAGAGTCTAGGATGAGTAAGTGTTAGAGATTTCCTGCCTCCCTTTGAGAGGAATAGGAAGGCAGAAAAAAGAA QDGSPCSTEDLLYDRDK|gyqegmdhvyvvhhyia* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25350 ANKMY1::MTERF4 ENSG00000144504.16::ENSG00000122085.17 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKMY1 ENSG00000144504.16 protein_coding - - chr2:240479422-240569209:- chr2:240499958:- chr2:241418839-241508626:- chr2:241439375:- MTERF4 ENSG00000122085.17 protein_coding - - chr2:241072169-241102332:- chr2:241075682:- chr2:242011584-242041747:- chr2:242015097:- chr2:240488957,chr2:240488957 chr2:241079498,chr2:241079494 NA NA chr2:241428374,chr2:241428374 chr2:242018913,chr2:242018909 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),MORN_repeat(100%)| Ank(100%),Ank_2(100%),Ank_3(100%),DSPc(100%),MORN(100%)| 1 0 0 17 6 ENST00000403283.6 ENST00000464344.6 upstream downstream none TGGACAGCAAGCTGGCCCTG___ATTGACCGACTCATCAGTCACGGGGCCGACATCCTGAAGCCTGTAATGCTCAGGCAGGGAGAAAAGGAGGCAGTGGGCACA...CTACGGCAGGCTGTCTTTGCCAAGGAGAGCCAGTGGGACCCCACGTGGCTGTACCTGTGCAAGAGAG|GAAGTACCACCAAGAACAGGGAAGGACAAGCCAG LRQAVFAKESQWDPTWLYLCKR|gsttknregqa NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25352 SCMH1::NMT1 ENSG00000010803.17::ENSG00000136448.13 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41113283:- chr1:41492874-41707978:- chr1:41578955:- NMT1 ENSG00000136448.13 protein_coding + + chr17:44957992-45109016:+ chr17:45081644:+ chr17:43035360-43186384:+ chr17:43159012:+ chr1:41097424,chr1:41097746,chr1:41097424 chr17:45065562,chr17:45065666,chr17:45065647 NA NA chr1:41563096,chr1:41563418,chr1:41563096 chr17:43142930,chr17:43143034,chr17:43143015 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none mbt_repeat(100%)|Myristoyl-CoA:protein_N-myristoyltransferase__C-terminal_domain(100%),Myristoyl-CoA:protein_N-myristoyltransferase__N-terminal_domain(100%) MBT(100%),SLED(0%)|NMT(100%),NMT_C(100%) 1 0 1 169 605 ENST00000695335.1 ENST00000592782.5 upstream upstream none GTTCGGGGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGGGCCTTTGACTACTGGTGCCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGTGTTCCTTGACTGGAGACAACCTGCAGCCTCCTGGCACCAAAG|TGGTTTGAGTCCAGCCAATGACACTGGAGCCAAAAAGAAGAAAAAG VRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTK|vv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25368 TOP1::ENSG00000286972 ENSG00000198900.7::ENSG00000286972.1 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4284 TRUE 1621 TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41029455:+ chr20:39657462-39753127:+ chr20:39658095:+ ENSG00000286972 ENSG00000286972.1 lncRNA + + chr20:40717257-40758636:+ chr20:40724332:+ chr20:39345897-39387276:+ chr20:39352972:+ chr20:41036023,chr20:41036022 chr20:40724247,chr20:40724243 NA NA chr20:39664663,chr20:39664662 chr20:39352887,chr20:39352883 NA NA sense sense out-of-frame CDS/splice-site intron duplication high none none none 46 28 53 1400 114 ENST00000361337.3 unknown downstream upstream duplicates(24),mismatches(7) GCTGGGGTCTGTTCTCGCCGCCCGCCCGGCAGTCAGGCAGCGTCGCCGCCGTGGTAGCAGCCTCAGCCGTTTCTGGAGTCTCGGGCCCACAGTCACCGCCGCTTACCTGCGCCTCCTCGAGCCTCCGGAGTCCCCGTCCGCCCGCACAGGCCGGTTCGCCGTCTGCGTCTCCCCCACGCCGCCTCGCCTGCCGCCGCGCTCGTCCCTCCGGGCCGACATGAGTGGGGACCACCTCCACAACGATTCCCAG___ATCGAAGCGGATTTCCGATTGAATG|GACTAAAGCCAAGAAAACTGAATAAGCCTCAATATTAAAACAAGGCAAGTGAATGTATGCCCATCACTGGACATCAGAGATCTGTAACTGTGCATCAGGCTGTGAGCTAAGCATAGAGGGAGGCTGAGAGTCACCCAG___GAGGCTGCAGGCAAGTCCTTAGCCCTGGGAGCGGCAAGGCAAATTCCAAGAAGAAGAAAGGATGCCCAT MSGDHLHNDSQIEADFRLN|glkprklnkpqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25369 TOP1::ENSG00000286972 ENSG00000198900.7::ENSG00000286972.1 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4284 TRUE 1621 TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41029455:+ chr20:39657462-39753127:+ chr20:39658095:+ ENSG00000286972 ENSG00000286972.1 lncRNA + + chr20:40717257-40758636:+ chr20:40757081:+ chr20:39345897-39387276:+ chr20:39385721:+ chr20:41036023,chr20:41036022 chr20:40724247,chr20:40724243 NA NA chr20:39664663,chr20:39664662 chr20:39352887,chr20:39352883 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none none none 1 0 2 1400 8 ENST00000361337.3 ENST00000655799.1 downstream upstream duplicates(4),mismatches(2) GTTCTCGCCGCCCGCCCGGCAGTCAGGCAGCGTCGCCGCCGTGGTAGCAGCCTCAGCCGTTTCTGGAGTCTCGGGCCCACAGTCACCGCCGCTTACCTGCGCCTCCTCGAGCCTCCGGAGTCCCCGTCCGCCCGCACAGGCCGGTTCGCCGTCTGCGTCTCCCCCACGCCGCCTCGCCTGCCGCCGCGCTCGTCCCTCCGGGCCGACATGAGTGGGGACCACCTCCACAACGATTCCCAG___ATCGAAGCGGATTTCCGATTGAATG|ATCTGATCTTTAAAAAAAATGCCCAAAGAGACATTGGCCAAGTTTCAGCATGAGGTATCACTGAAACCACTTCAGG...CACCTCAGAAGATGACAGCAGTGAAGAAAATGAGCATCACAAACTGGTTCCCAAGGCCTGGGCCTGAGAAACACTCAGGAGAGCCAATTGCTGAAAAAATAATAATAATAATACCCAGAGAGAGGAAGCCTTTTCTTCAGGAGGAAACTGACTCACACTCTCT MSGDHLHNDSQIEADFRLN|dlifkknaqrdigqvsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25370 SBNO1::FAM9B ENSG00000139697.14::ENSG00000177138.17 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4285 TRUE 1622 SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123313620:- chr12:123773656-123849394:- chr12:123798167:- FAM9B ENSG00000177138.17 protein_coding - - chrX:9024232-9295682:- chrX:9162904:- chrX:8992273-9263722:- chrX:9130945:- chr12:123311233,chr12:123311245 chrX:9169703,chrX:9169711 NA NA chr12:123795780,chr12:123795792 chrX:9137744,chrX:9137752 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none C-terminal_domain_on_Strawberry_notch_homologue(73%),P-loop_containing_NTP_hydrolase_pore-1(100%)|Cor1/Xlr/Xmr_conserved_region(100%) AAA_34(100%),Helicase_C_4(62%),ResIII(100%)|Cor1(100%) 30 25 55 1226 109 ENST00000602398.3 ENST00000494744.1 upstream downstream duplicates(25),mismappers(3),mismatches(3) GTTTG___GGGGCACTTACACATGGcGATAGAAGGGCAACAGAATCTAGAGATCTGAGCAGGTTCAACTTTGATAATAAG___TATGGAAGAAATGCTTTAGAAATTGTCATGAAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTATCCTGGAGAATTTTTTAAAG|GCAGATGGAGTTATTGCCATGGTGTTAGGACAAGCTGATTGTGTTAAAGCATGTGACACACCTAATTTCAGAAACCAGAGGGGAAATCGCCGCTCATTAAAGTTCAAG___GTGTAGATACTGGTTTCTAGTGATGACTAAATCACATTTGGAAGGCATTCCAAGGAAATAGGATTGGGAGTACAGGGAGGAGAAATC...___GATTTGAAGATTATCATGAAGAAATA LGALTHGDRRATESRDLSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPPPDYPGEFFK|grwsychgvrts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25371 SBNO1::FAM9B ENSG00000139697.14::ENSG00000177138.17 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4285 TRUE 1622 SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123313620:- chr12:123773656-123849394:- chr12:123798167:- FAM9B ENSG00000177138.17 protein_coding - + chrX:9024232-9295682:- chrX:9195101:+ chrX:8992273-9263722:- chrX:9163142:+ chr12:123311233 chrX:9169641 NA NA chr12:123795780 chrX:9137682 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none C-terminal_domain_on_Strawberry_notch_homologue(73%),P-loop_containing_NTP_hydrolase_pore-1(100%)| AAA_34(100%),Helicase_C_4(62%),ResIII(100%)| 2 5 7 1226 26 ENST00000602398.3 unknown upstream upstream duplicates(1),mismatches(2) GGGGCACTTACACATGGcGATAGAAGGGCAACAGAATCTAGAGATCTGAGCAGGTTCAACTTTGATAATAAG___TATGGAAGAAATGCTTTAGAAATTGTCATGAAATCCATTGTAAACTTGGATTCTCCTATGGTATCACCACCTCCAGACTATCCTGGAGAATTTTTTAAAG|ATGATGTGCCTTATGCATCACCTTGGATCCTCTTGGCCTCTCTGTCCCTGAGGAAGTCACTCCTG___GTCGCCAAAACCTCTGCAGAGTCC...___TTCTGGCCCTAGAGCAAAAATGTCTG GALTHGDRRATESRDLSRFNFDNKYGRNALEIVMKSIVNLDSPMVSPPPDYPGEFFK|ddvpyaspwillaslslrksllvaktsae NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25372 SBNO1::FAM9B ENSG00000139697.14::ENSG00000177138.17 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4285 TRUE 1622 SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123364701:- chr12:123773656-123849394:- chr12:123849248:- FAM9B ENSG00000177138.17 protein_coding - - chrX:9024232-9295682:- chrX:9162904:- chrX:8992273-9263722:- chrX:9130945:- chr12:123311233,chr12:123311245 chrX:9169703,chrX:9169711 NA NA chr12:123795780,chr12:123795792 chrX:9137744,chrX:9137752 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation low none |Cor1/Xlr/Xmr_conserved_region(100%) |Cor1(100%) 1 0 0 982 109 ENST00000602398.3 ENST00000651278.1 upstream downstream none CGCCGCTGCTGCCGCCGCCACCGCCGCCTCCGCTCCAGTCGCCTCTGGTCCTTCAAACTCACACCTCCCGGGAGGAGCTGTcCTGGCGCCGGGTCCCGCGGGGAAA|GCAGATGGAGTTATTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25373 PPT1::USP35 ENSG00000131238.18::ENSG00000118369.13 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2334 FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- USP35 ENSG00000118369.13 protein_coding + + chr11:78188812-78215232:+ chr11:78213646:+ chr11:77899858-77926278:+ chr11:77924692:+ chr1:40088680,chr1:40088682 chr11:78213207,chr11:78213205 NA NA chr1:40554352,chr1:40554354 chr11:77924253,chr11:77924251 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Palmitoyl_protein_thioesterase(61%)| Palm_thioest(33%)| 46 17 43 805 206 ENST00000642050.2 ENST00000529308.6 upstream upstream duplicates(18),mismatches(4) CTTGAATGTCAATTCCCAAGTAACAACAGTGTGTCAGGCACTTGCTAAGGATCCTAAATTGCAGCAAGGCTACAATGCTATGGGATTCTCCCAGGGAGGCCAATTTCT___GAGGGCAGTGGCTCAGAGATGCCCTTCACCTCCCATGATCAATCTGATCTCGGTTGGGGGACAACATCAAG___GTGTTTTTGGACTCCCTCGATGCCCAGGAGAGAGCTCTCACATCTGTGACTTCATCCGAAAAACACTGAATGCTGGGGCGTACTCCAAAGTTGTTCAGGAACG|GAGCAGGAGAAGGAGGCCCGGAGCAGGGCGGCCTACATCTCTGCACTCCCCACATCTCCGCACTGGGGGAGGGGCTTTGATGAAGACAAGGATGAGGATGAAGGCTCTCCAGGGGGCTGCAATCCTGCAGGTGGCAATGGTGGTGACTTCCACAGACTGGTCTTCTAATGTGAACCTGCTGCCAACCTGACCCCTTCCCTCCAGGAGCCAGGTAGGGCCTGAGGGAAGCTGTGGAGGCAGGCCCTACCAAGAGGAAGGATG LNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQEr|srrrrpgagrptslhsphlrtgggalmktrmrmkalqgaailqvamvvtstdwssnvnllpt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25374 RAB3GAP2::LINC02770 ENSG00000118873.17::ENSG00000228215.3 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB3GAP2 ENSG00000118873.17 protein_coding - - chr1:220148293-220272529:- chr1:220202276:- chr1:220321635-220445871:- chr1:220375618:- LINC02770 ENSG00000228215.3 lncRNA + - chr1:191823432-192011260:+ chr1:191880748:- chr1:191792562-191980390:+ chr1:191849878:- chr1:220201349,chr1:220201351 chr1:191889525,chr1:191889524 NA NA chr1:220374691,chr1:220374693 chr1:191858655,chr1:191858654 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Rab3_GTPase-activating_protein_regulatory_subunit_N-terminus(46%)| RAB3GAP2_N(49%)| 17 14 23 115 64 ENST00000358951.7 unknown upstream downstream duplicates(11),low_entropy(1),mismatches(6) GAAGAGTTGAGTATCTTATATCCAGCTGCCATTGTGACTATTGATGGATTTAGCCTTTTTCAATCTCTTCGTGCTTGTCtAAATCAGGTAGCAAAAG___CTGCAGCATCAGGCAATGAGAACATACAACCACCACCATTAGCTTATAAGAAATGGGGTCTACAAGATATTGACACTATTATTGATCATGCTAGTGTTG|CTGCTATAAAGAAGCAATCTGTCATGTAGTATGCTGCCACATGAAGGAGAGACCTCCAACCAACAGCCAGCAAGAAACTAAAGCCCTCACTCAAGTAGCCCACAAGAAGCCGAAcGCTGTCTATAACCACATGAGTTTGGAAGCAGATCCTTTTCCCAATCAAGCCACAGATGAGACCAAAACTCCAGTCAACACTTGGCTTACAGCTTTGTCAACCTGGATACAAAAAATGTATCTAAATTGTGC EELSILYPAAIVTIDGFSLFQSLRAClNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDHASV|aaikkqsvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25375 RAB3GAP2::ENSG00000223344 ENSG00000118873.17::ENSG00000223344.1 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB3GAP2 ENSG00000118873.17 protein_coding - - chr1:220148293-220272529:- chr1:220202276:- chr1:220321635-220445871:- chr1:220375618:- ENSG00000223344 ENSG00000223344.1 lncRNA - - chr1:191858707-191890229:- chr1:191880748:- chr1:191827837-191859359:- chr1:191849878:- chr1:220201349,chr1:220201351 chr1:191889525,chr1:191889524 NA NA chr1:220374691,chr1:220374693 chr1:191858655,chr1:191858654 NA NA sense sense out-of-frame CDS/splice-site intron deletion high none Rab3_GTPase-activating_protein_regulatory_subunit_N-terminus(46%)| RAB3GAP2_N(49%)| 17 14 23 115 64 ENST00000358951.7 unknown upstream downstream duplicates(11),low_entropy(1),mismatches(6) GAAGAGTTGAGTATCTTATATCCAGCTGCCATTGTGACTATTGATGGATTTAGCCTTTTTCAATCTCTTCGTGCTTGTCtAAATCAGGTAGCAAAAG___CTGCAGCATCAGGCAATGAGAACATACAACCACCACCATTAGCTTATAAGAAATGGGGTCTACAAGATATTGACACTATTATTGATCATGCTAGTGTTG|CTGCTATAAAGAAGCAATCTGTCATGTAGTATGCTGCCACATGAAGGAGAGACCTCCAACCAACAGCCAGCAAGAAACTAAAGCCCTCACTCAAGTAGCCCACAAGAAGCCGAAcGCTGTCTATAACCACATGAGTTTGGAAGCAGATCCTTTTCCCAATCAAGCCACAGATGAGACCAAAACTCCAGTCAACACTTGGCTTACAGCTTTGTCAACCTGGATACAAAAAATGTATCTAAATTGTGC EELSILYPAAIVTIDGFSLFQSLRAClNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDHASV|aaikkqsvm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25389 SLC35B4::ENSG00000289600 ENSG00000205060.11::ENSG00000289600.1 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC35B4 ENSG00000205060.11 protein_coding - - chr7:134289332-134316930:- chr7:134304805:- chr7:133974084-134001682:- chr7:133989557:- ENSG00000289600 ENSG00000289600.1 lncRNA + - chr7:135980929-135996598:+ chr7:135983711:- chr7:135665677-135681346:+ chr7:135668459:- chr7:134302435 chr7:135986644 NA NA chr7:133987187 chr7:135671392 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none UAA_transporter_family(35%)| UAA(54%)| 23 4 11 297 80 ENST00000378509.9 unknown upstream downstream duplicates(14),inconsistently_clipped(1),low_entropy(1),mismatches(3) CCG___GAAGCATCCAGGATGTGGGAACATTGTGACATTTGCACAATTTTTATTTATTGCTGTGGAAGGCTTCCTCTTTGAAGCTGATTTGGGAAGGAAGCCACCAGCTATCCCAATAAG___GTACTATGCCATAATGGTGACCATGTTCTTCACCGTGAGCGTGGTGAACAACTATGCCCTGAATCTCAACATTGCCATGCCCCTGCATATGATATTTAGATCC___GGTTCTCTAATTGCCAACATGATTCTAGGAATTATCATTTTGAAGAAAAG|GACATAATTGGAGACACTGGTGATTTCATCAAGACTTTGATTGTAATGACATTTTCAGATGGCCTTGAGAAAATGAGGCTGACCTATAAAGCCAATAAAAGCGCCTTGGAAAAC RKHPGCGNIVTFAQFLFIAVEGFLFEADLGRKPPAIPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKr|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25400 CNTN1::SBNO1 ENSG00000018236.15::ENSG00000139697.14 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE TRUE 2338 FALSE NA FALSE NA CNTN1 ENSG00000018236.15 protein_coding + + chr12:40692439-41072415:+ chr12:40959234:+ chr12:41086241-41466217:+ chr12:41353036:+ SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123296050:- chr12:123773656-123849394:- chr12:123780597:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),Ig_2(100%),Ig_3(100%),ig(100%)| 2 12 2 136 1325 ENST00000551295.7 ENST00000602398.3 downstream downstream duplicates(7),mismatches(1) ATTTGTTTGGTCCTTCAATGGCTATGTGATCGATTTTAACAAAGAGAATATTCACTACCAGAGGAATTTTATG___CTGGATTCCAATGGGGcATTACTAAT...CTGAAACATGCTGGAAGATACACATGCACTGCCCAGACAATTGTGGACAATTCTTCAGCTTCAGCTGACCTTGTAGTGAGAG|GTTTGATCATTCCGGCAAATTGTGTGTCTCCTCTTGTAAATCTCCTATCAACTTCAGACCAGTCTCAACAGCTTGCGGTCCAACAGAAACAGCTATGGCAACAGCATCACCCTCAGAGCATCACCAACTTGAGCAACGCATGAAGAACAGACAGGTTTCAACATGGATGGATCTGAAATGCTGTTGAAGCATATCATTTGCATAAAAATCAGGGACAGTTTCCAAAGAATTATATATTTTTTTCAGTTGTGCTCTCTAGTTAGTTTTTTTGGG LKHAGRYTCTAQTIVDNSSASADLVVR|gLIIPANCVSPLVNLLSTSDQSQQLAVQQKQLWQQHHPQSITNLSNA* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25404 TXLNA::KPNA6 ENSG00000084652.16::ENSG00000025800.14 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2339 FALSE NA FALSE NA TXLNA ENSG00000084652.16 protein_coding + + chr1:32179675-32198285:+ chr1:32194160:+ chr1:32645276-32663886:+ chr1:32659761:+ KPNA6 ENSG00000025800.14 protein_coding + + chr1:32108056-32176563:+ chr1:32154588:+ chr1:32573657-32642164:+ chr1:32620189:+ chr1:32194660,chr1:32194661 chr1:32144107,chr1:32144105 NA NA chr1:32660261,chr1:32660262 chr1:32609708,chr1:32609706 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Myosin-like_coiled-coil_protein(90%)|Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%),Importin_beta_binding_domain(100%) Taxilin(92%)|Arm(100%),Arm_3(100%),HEAT_2(100%),HEAT_EZ(100%),IBB(100%) 3 3 5 373 415 ENST00000373610.8 ENST00000373625.8 downstream upstream duplicates(2),low_entropy(3) GACAAAGTCTTCAAACACAAGGACCTACAACAGCAGCTGGTGGATGCCAAGCTCCAGCAGGCCCAGGAGATGCTAAAGGAGGCAGAAGAGCGGCACCAGCGGGAGAAGGATTTT___CTCCTGAAAGAGGCAGTAGAGTC...CAG___CTTGCCCTATACACAGAGAAGTTTGAGGAGTTCCAGAACACACTTTCCAAAAGCAGCGAGGTATTCACCACATTCAAGCAGGAGATGGAAAAG___ATGACTAAGAAGATCAAGAAGCTGGAGAAAGAAACCACCATGTACCGGTCCCGGTGGGAGAGCAGCAACAAGGCCCTGCTTGAGATGGCTGAGGAG|AGACCATGGCGAGCCCAGGGAAAGACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGAAGAGAGGAAGAGGGCATTCAGCTCCGGAAGCAGAAGCGAGAGCAACAA___CTTTTTAAACGGAGAAATGTGG QLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEE|rpwraqgktiie* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25405 TMEM38B::FKTN ENSG00000095209.12::ENSG00000106692.15 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE TRUE 2340 TRUE 4290 TRUE 1623 TMEM38B ENSG00000095209.12 protein_coding + + chr9:105694541-105776629:+ chr9:105748190:+ chr9:108456822-108538910:+ chr9:108510471:+ FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105615278:+ chr9:108320403-108416101:+ chr9:108377559:+ chr9:105765594 chr9:105609454 NA NA chr9:108527875 chr9:108371735 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none TRIC_channel(96%)|LicD_family(100%) TRIC(67%)|FKTN_N(10%),LicD(100%) 0 1 9 243 50 ENST00000374692.8 ENST00000223528.6 downstream upstream duplicates(1) TGAAGATGTCATA___CCCTGCCAAGGTAACCCTGCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTCCTTTATACCATCTTTATTGTGGCCACAAAG|CAGTACCTTGATGATAACACTGTGGAAGCTGTGGCCTTTCGGAAGAGTGCAAAGGAATTACTGCAACTAGCAGCGAAAACATTAAACAAATTGGGAGTACCATTCTGGCTGAGCAGTGGAACTTGTCTAG___GATGGTATCGACAATGCAACATTATTCCTTATAGCAAAGATGTTGACCTAGGAATTTTTATACAAGATTACAAATCTGATATTATTTTAGCATTTCAGGATGCAGGACTTCCG KMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATK|QYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25406 TMEM38B::FKTN ENSG00000095209.12::ENSG00000106692.15 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4290 TRUE 1623 TMEM38B ENSG00000095209.12 protein_coding + + chr9:105694541-105776629:+ chr9:105748190:+ chr9:108456822-108538910:+ chr9:108510471:+ FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105619934:+ chr9:108320403-108416101:+ chr9:108382215:+ chr9:105765594 chr9:105609454 NA NA chr9:108527875 chr9:108371735 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none TRIC_channel(96%)| TRIC(67%)|FKTN_N(0%) 3 0 2 243 51 ENST00000374692.8 ENST00000223528.6 downstream upstream duplicates(1) CTTTTTTGACATCGCGCACTATCTAGTGTCAGTGATGGCGGTGAAACGTCAGCCGG___GcATATTACATTTTTTTGCCCGaATGACaTAGTTTCCCAGGGCTA...CCGAG___GTGCAGGTGGTACCATTATAACGAATTTTGAGAGGTTGGTAAAAGGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCATA___CCCTGCCAAGGTAACCCTGCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTCCTTTATACCATCTTTATTGTGGCCACAAAG|GTAGAAGACAGCTTGGAACTATCCTTCCAGGGAAAAGATGATGTAAAACTTGAT RGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATK|VEDSLELSFQGKDDVKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25408 PLEKHM1::HMMR ENSG00000225190.12::ENSG00000072571.20 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHM1 ENSG00000225190.12 protein_coding - - chr17:45435900-45490758:- chr17:45489237:- chr17:43513266-43568124:- chr17:43566603:- HMMR ENSG00000072571.20 protein_coding + + chr5:163460203-163491941:+ chr5:163463856:+ chr5:162887209-162918947:+ chr5:162890862:+ chr17:45483992,chr17:45483999 chr5:163462391,chr5:163462384 NA NA chr17:43561358,chr17:43561365 chr5:162889397,chr5:162889390 NA NA sense sense unknown intron CDS/splice-site translocation high none |Hyaluronan_mediated_motility_receptor_C-terminal(100%),Hyaluronan_mediated_motility_receptor_N-terminal(99%) |HMMR_C(100%),HMMR_N(76%) 2 0 6 12 271 ENST00000579197.5 ENST00000358715.3 upstream upstream duplicates(2),mismatches(4) CCGCATCGTCGGCTCGGAGGCTGAGGGGCTGCCGCGGCCGGGAGCGCCCCTCGCCTCGCTCCTCGCTCCGCTTG___GGCCTCTCCCTGCCAGAGCTGATGGCAGATCAGTCCTGATGCTGAATTCAGGGGATATGATGGGTGCCAGAGGCAACGTTACCTGTTGTGAAGAGTATAG|GTTGTGCACCATCTCCAGGTGCTTATGATGTTAAAACTTTAGAAGTATTGAAAGGACCAGTATCCTTTCAGAAATCACAAAGATTTAAACAACAAAAAG___AATCTAAACAAAATCTTAATGTTGACAAAGATACTACCTTGCCTGCTTCAGCTAGAAAAGTTAAGTCTTCGGAATCAAAG...ATGATAAAGATTTGAAGATATTAGAGAAAGAG___ATTCGTGTTCTTCTACAGGAACGTGGTGCCCAGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25409 RAVER1::ICAM1 ENSG00000161847.15::ENSG00000090339.9 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAVER1 ENSG00000161847.15 protein_coding - + chr19:10316212-10333529:- chr19:10318840:+ chr19:10426888-10444205:- chr19:10429516:+ ICAM1 ENSG00000090339.9 protein_coding + + chr19:10271093-10286615:+ chr19:10283481:+ chr19:10381769-10397291:+ chr19:10394157:+ chr19:10321586,chr19:10321565 chr19:10277544,chr19:10277519 NA NA chr19:10432262,chr19:10432241 chr19:10388220,chr19:10388195 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' high none |Intercellular_adhesion_molecule_(ICAM)__N-terminal_domain(5%) |ICAM_N(0%) 0 4 4 13 47 unknown ENST00000264832.8 downstream upstream duplicates(3),mismatches(1) GTCAGACTGGTCTCACACTCACGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCAGTTCTGG...CAAAGACTAGCTTTGGCTAATAGGACTGAGGAGAGCTGGCACGTGGGTACCCGCCTCCTCTTCCTCCTCCAGGAACCCAGGGATCATCACCGCACGAATGGGCACACAGAAACTGTTCCAGCCTGTGGACGCCAAATATGTGAGGCCACATAGCTCACTGAGACCCAG|GGACTCCAGAACGGGTGGAACTGGCACCCCTCCCCTCTTGGCAGCCAGTGGGCAAGAACCTTACCCTACGCTGCCAGGTGGAGGGTGGGGCACCCCGGGCCAACCTCACCGTGGTGCTGCTCCGTGGGGAGAAGGAGCTGAAACGGGAGCCAGCTGTGGGGGAGCCCGCTGAGGTCACGACCACGGTGCTGGTGAGGAGAGATCACCATGGAGCCAATTTCTCGTGCCGCACTGAACTGGACCTGCGGCCCCAAGGGCTGGAGCTGTTTGAGAACACCTCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25410 WDR7::ENSG00000267327 ENSG00000091157.15::ENSG00000267327.2 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA WDR7 ENSG00000091157.15 protein_coding + + chr18:56651343-57029811:+ chr18:56758953:+ chr18:54318574-54697042:+ chr18:54426184:+ ENSG00000267327 ENSG00000267327.2 lncRNA + + chr18:55893038-56026082:+ chr18:56017728:+ chr18:53560269-53693313:+ chr18:53684959:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none WD_domain__G-beta_repeat(78%)| WD40(2%)| 1 2 1 29 17 ENST00000357574.7 ENST00000666716.1 downstream upstream none GACCAATGCAACTTTTATTGGTGATCATATGAAGAAGGGTCCTACCAG___GCCACCTAGACCAAGCACCCCAGACCTTTCTAAGGCAAGGGGTTCCCCTCCAACTTCCAGTAATATTGTGCAAGGACAGATTAAACAAG|CCCACAACAGCCTATGAAGAATAACTAGAGGTCTTCATATCAGAGGCAGAAG___GTACTGCAAGCTTACTTTCCAACGTGGCTGCATCGTTTCACATTCCCACCAGCAGTATGAGGTTTCCAATTTCTCTGCATCCTCATCAAAACTTGTTATTATCTGTCTTTTTTATTTTAGACGTTCTAGAAGGTGTGGAGTGGTATCTCATTGTGG TNATFIGDHMKKGPTRPPRPSTPDLSKARGSPPTSSNIVQGQIKQ|ahnsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25411 CNTN1::ABCB9 ENSG00000018236.15::ENSG00000150967.19 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CNTN1 ENSG00000018236.15 protein_coding + + chr12:40692439-41072415:+ chr12:40924652:+ chr12:41086241-41466217:+ chr12:41318454:+ ABCB9 ENSG00000150967.19 protein_coding - + chr12:122920951-122981649:- chr12:122967525:+ chr12:123405498-123466196:- chr12:123452072:+ chr12:40925988 chr12:122966867 NA NA chr12:41319790 chr12:123451414 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Immunoglobulin_domain(32%)| Ig_3(14%),ig(21%)| 2 0 2 159 0 ENST00000551295.7 unknown downstream upstream none GATGCTGGAATATACTACTGTTTAGCATCTAATAACTACGGGATGGTCAGAAGCACTGAAGCAACCCTGAGCTTTGGAT___ATCTTGATCCTTTCCCACCTGAGGAACGTCCTGAGGTCAGAGTAAAAGAAGGGAAAGGAATGGTGCTTCTCTGTGACCCCCCATACCATTTTCCAG|AGACTCCAGGATGGAGTGCAGTGGCGAGTTCTCAGCTCACTGCAGCCTCTGCTTCCCgGCTTCAAG DAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFP|etpgwsavassqltaasasrlq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25413 DCDC1::BBOX1-AS1 ENSG00000170959.15::ENSG00000254560.6 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DCDC1 ENSG00000170959.15 protein_coding - - chr11:30830369-31369810:- chr11:31265507:- chr11:30851916-31391357:- chr11:31287054:- BBOX1-AS1 ENSG00000254560.6 lncRNA - - chr11:27047186-27220113:- chr11:27047312:- chr11:27068733-27241660:- chr11:27068859:- chr11:31260358 chr11:27060631 NA NA chr11:31281905 chr11:27082178 NA NA sense sense stop-codon CDS/splice-site exon/splice-site deletion high none none none 1 0 2 5 6 ENST00000342355.8 ENST00000526061.5 upstream downstream duplicates(2) GATATACCCCATGAAGCCGATGTTTATGTTTCAACGGGAGAGCCCTTTTTAAATCCATTCAAAAAAATTAAAG___GTTTTAGATACTTGTACAATAAGAATGAATCTAAATTTACCAGCCAGATATTTTTATGATTTGTATGGCAGAAAAATTGAAGATATTTCAAAAG|GTTTGAATGAGAGAGGCAGAAGCACAT...TCTTTCCAACCCATTTTGCCAAATGGATGTCCTGAGGAAGGTGTTCCAAGAGAGGCGATGTCAGGATAGTGTCTGATTGGAGGGTGCCCAAGGCACATGGGAGAATGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25438 CLNS1A::GAB2 ENSG00000074201.9::ENSG00000033327.13 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77619606:- chr11:77225981-77348839:- chr11:77330651:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- chr11:77598782,chr11:77598786 chr11:78401708,chr11:78401709 NA NA chr11:77309827,chr11:77309831 chr11:78112754,chr11:78112755 NA NA sense sense in-frame 3'UTR/splice-site CDS/splice-site duplication medium none Regulator_of_volume_decrease_after_cellular_swelling(100%)|PH_domain(82%) Voldacs(100%)|PH(0%) 0 2 0 1976 16 ENST00000526761.5 ENST00000361507.5 upstream downstream duplicates(1),mismappers(1),mismatches(1) CACACCAACAGTTGCTGGACAGTTTGAGGATGCAGATGTTGATCACTGAAAATGATTTATGCAAGTTTAAG|GCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTG...TACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTGGCTTCAATCAGGCTGAGGAGAGCACAG___ACTCCCTGAG...CCTGTGTtAAACCAtATGCAGCCCtCCTTGTCCAaCAGCGCACCcCAGGAGTATCTtTACTTGCACtAtTtCATAAGCCGAAGAGCAGAAAATGCAA HQQLLDSLRMQMLItendlckfk|AWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25439 CSTF3-DT::PAX6 ENSG00000247151.7::ENSG00000007372.25 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSTF3-DT ENSG00000247151.7 lncRNA + + chr11:33161657-33191598:+ chr11:33161781:+ chr11:33183203-33213144:+ chr11:33183327:+ PAX6 ENSG00000007372.25 protein_coding - + chr11:31784779-31817961:- chr11:31794685:+ chr11:31806327-31839509:- chr11:31816233:+ chr11:33169574,chr11:33169574 chr11:31788125,chr11:31788122 NA NA chr11:33191120,chr11:33191120 chr11:31809673,chr11:31809670 NA NA sense antisense unknown exon/splice-site CDS duplication/5'-5' medium none none none 0 1 1 59 9 ENST00000531870.5 unknown downstream upstream duplicates(1) GGCTGTTGCTGAGCCGGCTCCAACCGGCTGGAAGGCGGGAAGCTGTTTCGCCTGGAGGCTCGCGCGCTTTTTGGAATTCAGTTATCAAGCTTTAGAGCCTGGCTACTCACAGTTGAAGCCTGATTGCAG|CTTCCGCTTCAGCTGAAGTCGCATTTGAGCCTCATCTGAATCTTCTCCGTTGGAACTGATGGAGTTGGTATTCTCTCCCCCTCCTTCCTGTTGCTGGCAGCCATCTGGAACAAAAAGAATAGGATGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25440 MBIP::SLC25A21 ENSG00000151332.20::ENSG00000183032.12 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MBIP ENSG00000151332.20 protein_coding - - chr14:36298564-36320637:- chr14:36311573:- chr14:36767770-36789843:- chr14:36780779:- SLC25A21 ENSG00000183032.12 protein_coding - - chr14:36677921-37172606:- chr14:36814001:- chr14:37147126-37641811:- chr14:37283206:- chr14:36310821 chr14:36858503 NA NA chr14:36780027 chr14:37327708 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Mitochondrial_carrier_protein(90%) |Mito_carr(21%) 1 0 1 162 13 ENST00000416007.9 ENST00000331299.6 upstream downstream none AAGAAAGCAAGCTGAAATCAATGAAAACAACGTCAGGGAATTTTGCAATGTTATTGATTGTAATCAAG___AAAATAGTTGTGCAAGAACTGATGCGATTTTTACCCCTTACCCCGGATTTAAAAGTCACGTAAAAG___TTTCTAGAGTTGTGAATACATACGGACCACAGACTAGACCTGAAGGA...GGTAATCAGGCTGTAGAAGAACGACTACAAAATATTGAGGCCCACTTGCGGTTACAGACAG|GTTTCAGATTCAGAGATGTGCAACCGATCCAAACAGT...GACAGCTTTCGAATGATTTTCCAAATGGAAGG___AGCAAGAGCATTTCATAGCCCTGGGTTAAACGAAAGAAAAAACAAAAAAAGAAACGAAAGAGAAGAAAA GNQAVEERLQNIEAHLRLQT|gfrfrdvqpiqt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25442 SPG11::GOLM2 ENSG00000104133.16::ENSG00000166734.20 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44628669:- chr15:44847016-44955886:- chr15:44920867:- GOLM2 ENSG00000166734.20 protein_coding + - chr15:44288719-44415758:+ chr15:44339228:- chr15:44580917-44707956:+ chr15:44631426:- chr15:44626926,chr15:44626940 chr15:44352548,chr15:44352563 NA NA chr15:44919124,chr15:44919138 chr15:44644746,chr15:44644761 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none none none 3 1 4 102 12 ENST00000684235.1 unknown upstream downstream duplicates(1),mismappers(1),mismatches(1) CCCCAAAGCAAACACTTTTCAGAACAATTGCTTAATCTTACACTGTCTTTCCTTAACAACCAAATAAAGGAGCTTTTCATTCACACTGAAG___AACTAGATGAACATCTGCAAAAAGGAGTGAACATTTTGACTAGCTACATTAATGAACTTCGAACCTTCATGATAAAGTTTCCTTGGAAGCTAACAGATGCTATAGATGAATATGATGTACATGAAAATGTCCCCAAAGTAAAGGAGAGCAATATATGGAAGAAACTCAGCTTTGAG|GGGAAATCACTATGAATTGGAAACCCATAAGAATTTGAGAAGACAATAAAACTATATAAATGAAAGGACAAATATTTCATTTATTTGATCTAAACATTCAG PQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTSYINELRTFMIKFPWKLTDAIDEYDVHENVPKVKESNIWKKLSFE|gksl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25453 CHD8::SUPT16H ENSG00000100888.15::ENSG00000092201.10 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD8 ENSG00000100888.15 protein_coding - - chr14:21385194-21456126:- chr14:21397823:- chr14:21853353-21924285:- chr14:21865982:- SUPT16H ENSG00000092201.10 protein_coding - + chr14:21351476-21384019:- chr14:21381805:+ chr14:21819635-21852178:- chr14:21849964:+ chr14:21395258 chr14:21373067 NA NA chr14:21863417 chr14:21841226 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' low none Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)| Chromo(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%)| 1 1 4 282 12 ENST00000646647.2 unknown upstream upstream duplicates(1),mismatches(1) GGGACAGTGAGGCTGACAAGTCGCTGCTCATTGGAGTCTTTAAACATG___GCTATGAGAAATATAATACCATGAGGGCAGACCCAGCCTTATGTTTCCTAGAAAAGGCTGGCCGACCAGATGACAAAGCAATTGCAGCAGAACATCGAGTGTTGGATAACTTCTCTGACATAGTAGAAGG|AGACGGGGGTCTCATCATCTTGC...AACTCCTtGCCTCATGTGCTGGGTACAGGCATGAGTCACGGTGCCCAGCCAG___CTTAAATACCAAAGGAATGACTTTAAATCTTtCTGGATGGGACTGCCAC DSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDIVEg|dggliil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25475 PLD3::BLVRB ENSG00000105223.21::ENSG00000090013.11 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4294 TRUE 1624 PLD3 ENSG00000105223.21 protein_coding + + chr19:40348456-40389472:+ chr19:40371873:+ chr19:40854363-40895379:+ chr19:40877780:+ BLVRB ENSG00000090013.11 protein_coding - - chr19:40447765-40465764:- chr19:40451492:- chr19:40953672-40971671:- chr19:40957399:- chr19:40374674,chr19:40374749,chr19:40374673 chr19:40453400,chr19:40453271,chr19:40453401 NA NA chr19:40880581,chr19:40880656,chr19:40880580 chr19:40959307,chr19:40959178,chr19:40959308 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none PLD-like_domain(38%),Phospholipase_D_Active_site_motif(100%)|NAD(P)H-binding_(43%) PLDc(100%),PLDc_2(88%),PLDc_3(21%)|Epimerase(0%),NAD_binding_10(20%),NmrA(0%) 3 2 19 1328 747 ENST00000700620.1 ENST00000643596.1 downstream downstream duplicates(8),mismatches(5) ACCCACTTCTACCTGGGCAGTGCCAACATGGACTGGCGTTCACTGACCCAG___GTCAAGGAGCTGGGCGTGGTCATGTACAACTGCAGCTGCCTGGCTCGAGACCTGACCAAGATCTTTGAGGCCTACTGGTTCCTGGGCCAGGCAGGCAGCTCCATCCCATCAACTTGGCCCCGGTTCTATGACACCCGCTACAACCAAGAGACACCAATGGAGATCTGCCTCAATGGAACCCCTGCTCTGGCCTACCTGGCG|CTTTCCTGCTCTGGGACCCTACCAAGGTGCCCCCACGACTGCAGGCTGTGACTGATGACCACATCCGGATGCACAAGGTGCTGCGGGAATCAGGCCTGAAGTACGTGGCTGTGATGCCGCCACACATAG___GAGACCAGCCACTAACTGGGGCGTACACAGTGACCCTGGATGGACGAGGGCCCTCAAGGGTCATCTCCAAAC THFYLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLA|LSCSGTLPRCPHDCRL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6796 chr19:40369846-40369907:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25476 PLD3::BLVRB ENSG00000105223.21::ENSG00000090013.11 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4294 TRUE 1624 PLD3 ENSG00000105223.21 protein_coding + + chr19:40348456-40389472:+ chr19:40371873:+ chr19:40854363-40895379:+ chr19:40877780:+ BLVRB ENSG00000090013.11 protein_coding - - chr19:40447765-40465764:- chr19:40448046:- chr19:40953672-40971671:- chr19:40953953:- chr19:40374674,chr19:40374749,chr19:40374673 chr19:40453400,chr19:40453271,chr19:40453401 NA NA chr19:40880581,chr19:40880656,chr19:40880580 chr19:40959307,chr19:40959178,chr19:40959308 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none PLD-like_domain(38%),Phospholipase_D_Active_site_motif(100%)|NAD(P)H-binding_(20%) PLDc(100%),PLDc_2(88%),PLDc_3(21%)|NAD_binding_10(0%) 1 0 8 1328 618 ENST00000700620.1 ENST00000643519.1 downstream downstream duplicates(2) CCCACTTCTACCTGGGCAGTGCCAACATGGACTGGCGTTCACTGACCCAG___GTCAAGGAGCTGGGCGTGGTCATGTACAACTGCAGCTGCCTGGCTCGAGACCTGACCAAGATCTTTGAGGCCTACTGGTTCCTGGGCCAGGCAGGCAGCTCCATCCCATCAACTTGGCCCCGGTTCTATGACACCCGCTACAACCAAGAGACACCAATGGAGATCTGCCTCAATGGAACCCCTGCTCTGGCCTACCTGGCG|GAGcCCAGCCACTAACTGGGGCGTACACAGTGACCCTGGATGGACGAGGGCCCTCAAGGGTCATCTCCAAACATGACCTGGGCCATTTCATGCTGCGCTGCCTCACCACCGATGAGTACGACGGACACAGCACCTACCCCTCCCACCAGTACCAGTAGCACTCTGTCCCCATCTGGGAGGGTGGCATTCTGGG HFYLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRFYDTRYNQETPMEICLNGTPALAYLA|epsh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6796 chr19:40369846-40369907:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25479 NDST3::USP53 ENSG00000164100.9::ENSG00000145390.12 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2344 TRUE 4295 TRUE 1625 NDST3 ENSG00000164100.9 protein_coding + + chr4:118033618-118258634:+ chr4:118143684:+ chr4:118954773-119179789:+ chr4:119064839:+ USP53 ENSG00000145390.12 protein_coding + + chr4:119212587-119295518:+ chr4:119245337:+ chr4:120133742-120216673:+ chr4:120166492:+ chr4:118178700,chr4:118178689 chr4:119223289,chr4:119223276 NA NA chr4:119099855,chr4:119099844 chr4:120144444,chr4:120144431 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none heparan_sulfate-N-deacetylase(100%)|Ubiquitin_carboxyl-terminal_hydrolase(96%) HSNSD(100%)|UCH(80%),UCH_1(75%) 2 9 5 43 95 ENST00000296499.6 ENST00000692078.1 downstream upstream duplicates(7),mismappers(1) GCTTTTCACTCACACCATTTTCTACAAAGAATATCCAGGGGGTCCTAAAGAGCTGGATAAGAGTATCCAAGGAGGAGAACTTTTCTTCACTGTCGTCCTCAACCCT|GTTTTATGGCAATTGGATATATTCCGACGAAGCTTGCGGGTTTTGACTGGACATGTTTGTCAGGGAGATGCCTGTATATTTTGTGCATTGAAG___ACGATATTTGCACAGTTCCAACACAGTCGAG LFTHTIFYKEYPGGPKELDKSIQGGELFFTVVLNP|VLWQLDIFRRSLRVLTGHVCQGDACIFCALKTIFAQFQHSR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25480 NDST3::USP53 ENSG00000164100.9::ENSG00000145390.12 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4295 TRUE 1625 NDST3 ENSG00000164100.9 protein_coding + + chr4:118033618-118258634:+ chr4:118143684:+ chr4:118954773-119179789:+ chr4:119064839:+ USP53 ENSG00000145390.12 protein_coding + + chr4:119212587-119295518:+ chr4:119239218:+ chr4:120133742-120216673:+ chr4:120160373:+ chr4:118178700,chr4:118178689 chr4:119223289,chr4:119223276 NA NA chr4:119099855,chr4:119099844 chr4:120144444,chr4:120144431 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion high none heparan_sulfate-N-deacetylase(100%)|Ubiquitin_carboxyl-terminal_hydrolase(100%) HSNSD(100%)|UCH(100%),UCH_1(100%) 2 0 7 43 47 ENST00000296499.6 ENST00000692078.1 downstream upstream duplicates(6) GGTGGTTTCCTCACATGTGGAGCCATATGCAGCCCCACCTCTTCCACAATGAGTCATCTTTGGTGGAGCAGATGATTCTCAACAAAAAATTTGCCTTA___GAG...CTGGAATATTAAAATCACCAGCACTGAAGAATATCCACATCTGAAGCCAGCTAGATACCGGAGGGGTTTTATCCACAAAAACATCATG___GTTCTCCCAAGACAAACCTGTGGGCTTTTCACTCACACCATTTTCTACAAAGAATATCCAGGGGGTCCTAAAGAGCTGGATAAGAGTATCCAAGGAGGAGAACTTTTCTTCACTGTCGTCCTCAACCCT|ATTTGCTTTGAGGTCACATTGATATGAAATATGGAGTCACCTTTTATAACTTCACCTGGGAAAGAGAGAGAAAACTTTCTTGTTAAAAAAACATAAGGAAAACAAACAACCAAAGGAATCATGCCAAATGCC...TTGTATTATTAACATATTTTATGCATCAAGACAAATGGCTTATGCATTAAAGGGGATtATTCGTTCATCAGTATTTTTAGCCATTAAAAAAAATCGTTTTC WNIKITSTEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYPGGPKELDKSIQGGELFFTVVLNP|icfevtli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25481 LARS2::KIF15 ENSG00000011376.12::ENSG00000163808.17 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2345 FALSE NA FALSE NA LARS2 ENSG00000011376.12 protein_coding + + chr3:45388561-45554726:+ chr3:45388680:+ chr3:45430053-45596218:+ chr3:45430172:+ KIF15 ENSG00000163808.17 protein_coding + + chr3:44761721-44873376:+ chr3:44826039:+ chr3:44803213-44914868:+ chr3:44867531:+ chr3:45389270,chr3:45389271 chr3:44816525,chr3:44816523 NA NA chr3:45430762,chr3:45430763 chr3:44858017,chr3:44858015 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Hyaluronan_mediated_motility_receptor_C-terminal(100%) |HMMR_C(100%) 1 13 0 62 92 ENST00000650792.2 ENST00000326047.9 downstream upstream duplicates(8),mismatches(2) TGGCCCGGCAGTGCTCGCCTAAAGGTGGAGAACGAGGAGTAGAGGAGCCGCAGGCCAGAGCCTGTGAGCAG|GTTAGAAAACGAAAAGCTGCTTGAGAGCAAAGCCTGCCTACAGGATTCCTATGACAACTTACAAGAAATAATGAAATTTGAGATTGACCAACTTTCAAGAAACCTCCAAAACTTCAAAAAAGAAAATGAAACTCTGAAATCTGATCTGAAT___AATTTGATGGAGCTTCTTGAGGCAGAAAAAGAACGCAATAACAAATTATCATTACAGTTTGAAGAAGATAAAGAAAACAGTTCTAA___AGAAATCTTAAAAGTTCTTGAGGCTGTACGTCAGGAGAAACAGAAAGAGACGGCCAAGTGTGAGCAGCAG___ATGGCAAAAGTACAGAAACTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-564 chr3:44861888-44861981:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25483 UHRF2::KDM4C ENSG00000147854.17::ENSG00000107077.19 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2346 TRUE 4296 TRUE 1626 UHRF2 ENSG00000147854.17 protein_coding + + chr9:6413151-6507054:+ chr9:6434173:+ chr9:6413151-6507054:+ chr9:6434173:+ KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:6980925:+ chr9:6720863-7175648:+ chr9:6980925:+ chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Tandem_tudor_domain_within_UHRF1(48%),Ubiquitin_family(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%) TTD(24%),Ubiquitin_2(100%),ubiquitin(43%)|PHD_2(100%),Tudor_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%) 2 2 3 56 35 ENST00000468435.6 ENST00000381309.8 downstream upstream duplicates(5) CACGTGGCAAAACTCCACTGAAGAATGGCAGTTCTTGTAAAAGGACTAATGGAAATATAAAGCATAAATCCAAAGAGAACACAAATAAATTGGACAGTGTACCCTCTACGTCTAATTCAGACTGTGTTGCTGCTGATGAAGACGTTATTTACCATATCCAGTATGATGA|TGCACTTGCAGGAAAGACATGGTGAAGATTTCAATGGATATCTTTGTGAGGAAATTTCAGCCAGACAGATATCAGCTTTGGAAACAAGGAAAGGATATATACACCATTGATCACACGAAGCCTACTCCAGCATCCACCCCTGAAGTAAAAGCATGGCTGCAGAGGAGGAGGAAAGTAAGAAAAGCATCCCGAAG___CTTCCAGTGTGCTAGGTCTACCTCTAAAAGGCCTAAGGCTGATGAGGAAGAGGAAGTGTCAGATGAAGTCGAT RGKTPLKNGSSCKRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDd|alagktw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25484 UHRF2::KDM4C ENSG00000147854.17::ENSG00000107077.19 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4296 TRUE 1626 UHRF2 ENSG00000147854.17 protein_coding + + chr9:6413151-6507054:+ chr9:6421142:+ chr9:6413151-6507054:+ chr9:6421142:+ KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:6980925:+ chr9:6720863-7175648:+ chr9:6980925:+ chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion high none Tandem_tudor_domain_within_UHRF1(2%),Ubiquitin_family(100%)|Jumonji_domain-containing_protein_2A_Tudor_domain(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%) TTD(0%),Ubiquitin_2(100%),ubiquitin(16%)|PHD_2(100%),Tudor_2(100%),zf-HC5HC2H(100%),zf-HC5HC2H_2(100%) 0 1 1 63 35 ENST00000468435.6 ENST00000381309.8 downstream upstream none CCCTGaTCTAATAGTCCACCTAAAGTAAAGAAAGCTCCGAGGGTAGGACCTTCCAATCAGCCATCTACATCAGCTCGTGCCCGTCTTATTGATCCTGGCTTTGGAATATATAAG|TGCACTTGCAGGAAAGACATGGTGAAGATT...GGAGGAAAGTAAGAAAAGCATCCCGAAG___CTTCCAGTGTGCTAGGTCTACCTCTAAAAGGCCTAAGGCTGATGAGGAAGAGGAAGTGTCAGATGAAGTCGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25485 LIMS2::SAP130 ENSG00000072163.20::ENSG00000136715.19 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2347 FALSE NA FALSE NA LIMS2 ENSG00000072163.20 protein_coding - - chr2:127638381-127681786:- chr2:127654424:- chr2:128395956-128439360:- chr2:128411998:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127945559:- chr2:128698791-128785694:- chr2:128703133:- chr2:127653038 chr2:127945965 NA NA chr2:128410612 chr2:128703539 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none LIM_domain(36%)|Histone_deacetylase_complex_subunit_SAP130_C-terminus(26%) LIM(6%)|SAP130_C(7%) 3 0 4 127 169 ENST00000410011.5 ENST00000259234.10 upstream downstream duplicates(1) GCCGAGCGCATTGTCAACAGCAATGGGGAGCTGTACCATGAGCACTGCTTCGTGTGTGCCCAGTGCTTCCGGCCCTTCCCCGAGGGGCTCTTCTATGAG...CGGAAGTACTGCGAACACGACTTCCAAATGCTGTTTGCTCCGTGCTGTGGATCCTGCG___GTGAGTTCATCATTGGCCGCGTCATCAAGGCCATGAACAACAACTGGCACCCGGGCTGCTTCCGCTGCGAGCTGTGTGATGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAATGCCGGCAG|AGGAGAAGAAAGCTATGCTGCAGGAAATAGCTAATCAGAAAGGAGTATCCTGTCGTGCTCAAGGCTGGAAAGTCCACCTCTGTGCTGCCCAGTTACTACAGCTG___ACGAATCTAGAACATGA RKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGr|geesyaagns* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25493 BTBD9::SSPN ENSG00000183826.19::ENSG00000123096.12 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BTBD9 ENSG00000183826.19 protein_coding - - chr6:38168451-38640148:- chr6:38577600:- chr6:38136227-38607924:- chr6:38545376:- SSPN ENSG00000123096.12 protein_coding + + chr12:26121991-26299290:+ chr12:26224293:+ chr12:26274924-26452223:+ chr12:26377226:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none BTB/POZ_domain(100%),BTB_And_C-terminal_Kelch(100%),F5/8_type_C_domain(42%)|CD20-like_family(75%) BACK(100%),BTB(100%),F5_F8_type_C(0%)|CD20(50%) 1 0 2 26 4 ENST00000481247.6 ENST00000535504.1 upstream upstream duplicates(1) GATTAAGCTAGGTCAGCCATCCATTATCAATCACATACGGATACTCTTGTGGGACCGAGATAGCCG___GTCTTACTCATACTTCATTGAAGTGTCAATGGATG...GTCGTTCTTGGCAGAAATTATATTTTCCAGCCCGTGTCTGCAG|GTCTGCTTAGTGGCCTATCTTGGCTTGTTTATGCTTTGTGTCTCATATCAGGTTGACG RSWQKLYFPARVCr|sa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25494 ENSG00000258081::AKAP6 ENSG00000258081.4::ENSG00000151320.11 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4298 TRUE 1627 ENSG00000258081 ENSG00000258081.4 lncRNA + + chr14:26599755-27295516:+ chr14:27134038:+ chr14:27068961-27764722:+ chr14:27603244:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32735658:+ chr14:32798504-33306890:+ chr14:33204864:+ chr14:27139995,chr14:27139995,chr14:27139993 chr14:32733773,chr14:32733772,chr14:32733767 NA NA chr14:27609201,chr14:27609201,chr14:27609199 chr14:33202979,chr14:33202978,chr14:33202973 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none none none 0 2 1 15 8 ENST00000656336.1 ENST00000280979.9 downstream upstream duplicates(3) ATAGAACTTATGCACTTCTTGGATAATTCTCTTGGATGGCCTTCTATTAATTTTCTG___GTCAGCTTCCCCCAATATTTTTCTACTTTGGATAGGtGGACTACCTCTCAGCATTTCCTGTAATGGCAT|AAAACCCTAGGAGAGAAGATCCAGGACACAATGGCAGGGCACAGTGGGTCGAGTCCACGTGACCTGCTCTCTCCTGAAAGTGGAAGCCTGGTAAGGC...CTGAAAGGATGGCTAAGAGATACAGAGCTTTTCATCTTCAATTCCTGTCTGAGACAAGAAAAGGAAGGAACAATGAATACTGAGAAACAACTGCAATACTT...TCTGTCGTGAAATCAAGCAACGACGTCGAGGAGTTGCCTCCATTCTGCGACTATGCCAGCATCTTTTGGATGACCGGGAGACTTGCAATCTGAATGCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25496 ENSG00000258081::AKAP6 ENSG00000258081.4::ENSG00000151320.11 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4298 TRUE 1627 ENSG00000258081 ENSG00000258081.4 lncRNA + + chr14:26599755-27295516:+ chr14:26843656:+ chr14:27068961-27764722:+ chr14:27312862:+ AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32735658:+ chr14:32798504-33306890:+ chr14:33204864:+ chr14:27139995,chr14:27139995,chr14:27139993 chr14:32733773,chr14:32733772,chr14:32733767 NA NA chr14:27609201,chr14:27609201,chr14:27609199 chr14:33202979,chr14:33202978,chr14:33202973 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none none none 0 1 0 55 8 ENST00000552303.1 ENST00000280979.9 downstream upstream none GGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCCTCATAAG|AAAACCCTAGGAG...ATGGGAAAGGAATCT___GAGACTTTGAATGTGATTGATCCTGGCTTGATGGACCTAAATGGGATGAGTGAGGATGCCCTGGAATGGGATGAAATGGACATAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25497 CEP135::ENSG00000249392 ENSG00000174799.12::ENSG00000249392.1 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP135 ENSG00000174799.12 protein_coding + + chr4:55948871-56033361:+ chr4:55971408:+ chr4:56815037-56899527:+ chr4:56837574:+ ENSG00000249392 ENSG00000249392.1 lncRNA - - chr4:59551142-59630324:- chr4:59594479:- chr4:60416860-60496042:- chr4:60460197:- chr4:55973473,chr4:55973472 chr4:59621117,chr4:59621118 NA NA chr4:56839639,chr4:56839638 chr4:60486835,chr4:60486836 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 2 1 0 122 3 ENST00000257287.5 ENST00000504537.1 downstream downstream duplicates(1) TTAAAAGAAAGCTCTCTGAAATGCAGGATCTTGAAGAAACAATGGCAAAACTTCAGCTG___GAATTGAACTTATGCCAGAAAGAAAAGGAGAGACTGAGTGATGAACTCCTTGTAAAATCAGACCTAGAAACTGTTGTTCATCAGCTTGAACAAGAAAAGCAAAGACTTAGCAAAAAAGTTGAAAGTTTTGCAGTTACAG|ATTATCTTGAAATGTCAGACTCTCTGGAACTACTAGACTCAGCATAAACAACAGGAGTTGGTGAGTGTGTTCCTAATTTACACAAGGCCA KRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVT|dylemsdslelldsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25498 KHDC1::SYNE1 ENSG00000135314.14::ENSG00000131018.25 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KHDC1 ENSG00000135314.14 protein_coding - - chr6:73241314-73310365:- chr6:73262774:- chr6:73951037-74020088:- chr6:73972497:- SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152505397:- chr6:152442822-152958936:- chr6:152826532:- chr6:73247329,chr6:73247313,chr6:73247300 chr6:152505677,chr6:152505677,chr6:152505677 NA NA chr6:73957052,chr6:73957036,chr6:73957023 chr6:152826812,chr6:152826812,chr6:152826812 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Calponin_homology_(CH)_domain(40%),Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(100%) |CH(7%),KASH(100%),Spectrin(100%) 1 1 0 16 1 ENST00000257765.10 ENST00000367255.10 upstream downstream duplicates(1) GAACTCGGTTAGTCCGGTGAAGGGACAGAGAAGCCTGGGTTCCCGGCGGCATCACTGAGATGCTCAGTCCTGAATTCTGCCCTCCATTAGGATTATCTGCTTTGTGGGATAATTTCCTCATTGGTTGAGTCAGTGAGTTGCGTGTCTGCAAGAGAGCATCCTATCTG|GCAGACTGGAATAGAAGTAAAAcATTTTGGGAAGAGTTGGAGAAGCGGGGTTGCCTTTCATTCAGTTATTCATGCCATTCGACCGGAATTGGcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25499 ENSG00000243501::SYNE1 ENSG00000243501.5::ENSG00000131018.25 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000243501 ENSG00000243501.5 protein_coding - - chr6:73209746-73263196:- chr6:73262774:- chr6:73919469-73972919:- chr6:73972497:- SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152505397:- chr6:152442822-152958936:- chr6:152826532:- chr6:73247329,chr6:73247313,chr6:73247300 chr6:152505677,chr6:152505677,chr6:152505677 NA NA chr6:73957052,chr6:73957036,chr6:73957023 chr6:152826812,chr6:152826812,chr6:152826812 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Calponin_homology_(CH)_domain(40%),Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(100%) |CH(7%),KASH(100%),Spectrin(100%) 1 1 0 16 1 ENST00000423730.3 ENST00000367255.10 upstream downstream duplicates(1) GAACTCGGTTAGTCCGGTGAAGGGACAGAGAAGCCTGGGTTCCCGGCGGCATCACTGAGATGCTCAGTCCTGAATTCTGCCCTCCATTAGGATTATCTGCTTTGTGGGATAATTTCCTCATTGGTTGAGTCAGTGAGTTGCGTGTCTGCAAGAGAGCATCCTATCTG|GCAGACTGGAATAGAAGTAAAAcATTTTGGGAAGAGTTGGAGAAGCGGGGTTGCCTTTCATTCAGTTATTCATGCCATTCGACCGGAATTGGcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25506 HM13::LINC01837 ENSG00000101294.19::ENSG00000267489.5 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31554829:+ chr20:30102231-30165726:+ chr20:30142632:+ LINC01837 ENSG00000267489.5 lncRNA - + chr19:31797666-32072113:- chr19:31950687:+ chr19:32288572-32563019:- chr19:32441593:+ chr20:31555726,chr20:31555727 chr19:31937736,chr19:31937734 NA NA chr20:30143529,chr20:30143530 chr19:32428642,chr19:32428640 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Signal_peptide_peptidase(74%)| PUA(100%),Peptidase_A22B(65%),Pre-PUA(100%)| 1 1 3 1537 5 ENST00000340852.9 unknown downstream upstream mismatches(1) GCCTGAGCAGCATCGTTGGCGTCTGGTACCTGCTGAGGAAG___CACTGGATTGCCAACAACCTTTTTGGCCTGGCCTTCTCCCTTAATGGAGTAGAGCTCCTG...TCGAAGCAAACAACTTTGCCATGCTGGGACTTGGAGATGTCGTCATTCCAG|CACTCATTTCTCCGAGATACTGCAATACAGACTGATGTATGAATTCTCACTGCACCCCCAGTATTAGAATGGAAGCTCCATGAGGGAAAAGACATTGCCTTGTTCACTGCGGATTCCAGGTACCTAAACCAATTCCTGACACAAAGCAGTGGTTCAGTAAATATTTGCGAATAAGCAAATAAATGAATGGATCATGTAACCAGGACACTGACCAACTCTCTGG EANNFAMLGLGDVVIP|alisprycntd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25510 NAA35::GOLM1 ENSG00000135040.16::ENSG00000135052.16 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAA35 ENSG00000135040.16 protein_coding + + chr9:85941146-86025462:+ chr9:85996577:+ chr9:88556061-88640377:+ chr9:88611492:+ GOLM1 ENSG00000135052.16 protein_coding - + chr9:86026146-86100173:- chr9:86061422:+ chr9:88641061-88715088:- chr9:88676337:+ chr9:85999033,chr9:85998978,chr9:85998978 chr9:86050766,chr9:86050760,chr9:86050758 NA NA chr9:88613948,chr9:88613893,chr9:88613893 chr9:88665681,chr9:88665675,chr9:88665673 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' low none Mak10_subunit__NatC_N(alpha)-terminal_acetyltransferase(100%)| Mak10(100%)| 2 1 1 71 5 ENST00000361671.10 unknown downstream upstream duplicates(1),low_entropy(1),mismappers(2) GAGTACTCGAAGTCGACAAGGAGAAG-AAGAGATCCAGAAGTTGAACTAGAA___CACCAACAATGTTTAGCAGTATTCAGCAGAGTGAAATTTACTCGTGTGTTACTGACAGTGCTTATAGCCTTTACTAAGAAAGAG___ACCAG...CAATTATGATGGGTTTTGAACCCCTTGTGAACCAGAGGCTACTTCCACCTACCTTCCCTCGATATGCAAAAATAATTAAAAGGGAAGAAATGGTGAACTATTTTGCAAGATTAATAGATAGAATAAAAACTGTCTGTGAGGTTGTGAATTTAACAAATTTACATTGTATCCTG|TATAGCTCCATCAACAATTATCAACTATGACAAATGGCCTTCGAAGCTCACTAATGAGGATAAAGGGAGGAAAAAGAAAAGAAAAACGAGTAACAGAGAAAGAGGGCAGCAGAGGGAAGACCGGGATGGGAG IMMGFEPLVNQRLLPPTFPRYAKIIKREEMVNYFARLIDRIKTVCEVVNLTNLHCIL|yssinnyql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25524 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125679933:+ chr8:126660571-127021174:+ chr8:126692177:+ chr8:127824906,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127832772,chr8:127839300,chr8:127839328,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127857452,chr8:127857543,chr8:127857571,chr8:127857674,chr8:127857018,chr8:127857147,chr8:127858451,chr8:127858451,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858295,chr8:127858328,chr8:127858782,chr8:127858850,chr8:127858945,chr8:127859008,chr8:127859024,chr8:127859024,chr8:127859109,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880746,chr8:127880898,chr8:127880452,chr8:127802576,chr8:127802276,chr8:127802415,chr8:127802445,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127887600,chr8:127893429,chr8:127893451,chr8:127895803,chr8:127907113,chr8:127907198,chr8:127907209,chr8:127907209,chr8:127907218,chr8:127913080,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127841461,chr8:127887714,chr8:127880879,chr8:127888220,chr8:127841333,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127827096,chr8:127880709,chr8:127888054,chr8:127841826,chr8:127858346,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127829153,chr8:127887680,chr8:127829224,chr8:127869244,chr8:127887637,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127841429,chr8:127858297,chr8:127839641,chr8:127842268,chr8:127857032,chr8:127858140,chr8:127808779,chr8:127893369,chr8:127842526,chr8:127802339,chr8:127809317,chr8:127858393,chr8:127841849,chr8:127850926,chr8:127858326,chr8:127841837,chr8:127859054,chr8:127841849,chr8:127858287,chr8:127850839,chr8:127857046,chr8:127808261,chr8:127858999,chr8:127808239,chr8:127839360,chr8:127841945,chr8:127802435,chr8:127850836,chr8:127857043,chr8:127859027,chr8:127808267,chr8:127883633,chr8:127808229,chr8:127808278,chr8:127841990,chr8:127858162,chr8:127841927,chr8:127808254,chr8:127808251,chr8:127858197,chr8:127808260,chr8:127808276,chr8:127841416,chr8:127857432,chr8:127859081,chr8:127895230,chr8:127857429,chr8:127859081,chr8:127895227,chr8:127808277,chr8:127858915,chr8:127802338,chr8:127809316,chr8:127841944,chr8:127808266,chr8:127841473,chr8:127841497,chr8:127839357,chr8:127808277,chr8:127808274,chr8:127895304,chr8:127808283,chr8:127850923,chr8:127857141,chr8:127858323,chr8:127858946,chr8:127895387,chr8:127895379,chr8:127850941,chr8:127839415,chr8:127858272,chr8:127895387,chr8:127893421,chr8:127809340,chr8:127895380,chr8:127857118,chr8:127808251,chr8:127842010,chr8:127850796,chr8:127808334,chr8:127850817,chr8:127895269,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127804468,chr8:127804599,chr8:127804638,chr8:127907235,chr8:127903841,chr8:127903939,chr8:127808755,chr8:127808213,chr8:127808813,chr8:127808821,chr8:127808844,chr8:127808309,chr8:127808317,chr8:127812326,chr8:127813153,chr8:127813194,chr8:127813194,chr8:127812472,chr8:127813896,chr8:127813961,chr8:127813833 chr8:125652773,chr8:125668217,chr8:125652896,chr8:125668188,chr8:125652729,chr8:125679631,chr8:125664048,chr8:125663895,chr8:125662633,chr8:125663448,chr8:125667205,chr8:125663888,chr8:125666578,chr8:125663896,chr8:125663438,chr8:125663887,chr8:125664054,chr8:125667116,chr8:125663530,chr8:125664059,chr8:125665327,chr8:125667224,chr8:125667227,chr8:125665272,chr8:125665271,chr8:125651092,chr8:125662864,chr8:125667118,chr8:125663911,chr8:125667257,chr8:125667060,chr8:125663451,chr8:125664021,chr8:125663443,chr8:125665327,chr8:125665351,chr8:125667068,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125648182,chr8:125648182,chr8:125652953,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125652850,chr8:125652743,chr8:125652817,chr8:125663436,chr8:125665001,chr8:125664042,chr8:125662830,chr8:125652819,chr8:125652727,chr8:125652816,chr8:125652896,chr8:125664036,chr8:125662878,chr8:125664615,chr8:125652872,chr8:125652745,chr8:125652727,chr8:125670403,chr8:125670403,chr8:125652956,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651285,chr8:125651287,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652582,chr8:125652806,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125656875,chr8:125666631,chr8:125666631,chr8:125666676,chr8:125666744,chr8:125666829,chr8:125667059,chr8:125667059,chr8:125667081,chr8:125667085,chr8:125667085,chr8:125667085,chr8:125667110,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667129,chr8:125667205,chr8:125667241,chr8:125667241,chr8:125667241,chr8:125667247,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667276,chr8:125667276,chr8:125667303,chr8:125662799,chr8:125662799,chr8:125662866,chr8:125662866,chr8:125662874,chr8:125662889,chr8:125662937,chr8:125662950,chr8:125662985,chr8:125663007,chr8:125663007,chr8:125663007,chr8:125663397,chr8:125663397,chr8:125663397,chr8:125663463,chr8:125663484,chr8:125663534,chr8:125663534,chr8:125663658,chr8:125663658,chr8:125663860,chr8:125663877,chr8:125663964,chr8:125663964,chr8:125663982,chr8:125663993,chr8:125663993,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664096,chr8:125664418,chr8:125665270,chr8:125665270,chr8:125665354,chr8:125665425,chr8:125665425,chr8:125665437,chr8:125665456,chr8:125665478,chr8:125665800,chr8:125665800,chr8:125665800,chr8:125666330,chr8:125666330,chr8:125668106,chr8:125668242,chr8:125668273,chr8:125669992,chr8:125670128,chr8:125670211,chr8:125670278,chr8:125671928,chr8:125672074,chr8:125663887,chr8:125665452,chr8:125662881,chr8:125662888,chr8:125662896,chr8:125664057,chr8:125662866,chr8:125664039,chr8:125666682,chr8:125666453,chr8:125666446,chr8:125667137,chr8:125670279,chr8:125670403,chr8:125669513 NA NA chr8:128837152,chr8:128841460,chr8:128841489,chr8:128841489,chr8:128841282,chr8:128845018,chr8:128851546,chr8:128851574,chr8:128853976,chr8:128854154,chr8:128853619,chr8:128853775,chr8:128854782,chr8:128863003,chr8:128863033,chr8:128863057,chr8:128863132,chr8:128869698,chr8:128869789,chr8:128869817,chr8:128869920,chr8:128869264,chr8:128869393,chr8:128870697,chr8:128870697,chr8:128870394,chr8:128870413,chr8:128870432,chr8:128870541,chr8:128870574,chr8:128871028,chr8:128871096,chr8:128871191,chr8:128871254,chr8:128871270,chr8:128871270,chr8:128871355,chr8:128881535,chr8:128881556,chr8:128881569,chr8:128881684,chr8:128892843,chr8:128892926,chr8:128892919,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892992,chr8:128893144,chr8:128892698,chr8:128814822,chr8:128814522,chr8:128814661,chr8:128814691,chr8:128900487,chr8:128900567,chr8:128899895,chr8:128899846,chr8:128905675,chr8:128905697,chr8:128908049,chr8:128919359,chr8:128919444,chr8:128919455,chr8:128919455,chr8:128919464,chr8:128925326,chr8:128892925,chr8:128892925,chr8:128892925,chr8:128853707,chr8:128899960,chr8:128893125,chr8:128900466,chr8:128853579,chr8:128905584,chr8:128892955,chr8:128905617,chr8:128839342,chr8:128892955,chr8:128900300,chr8:128854072,chr8:128870592,chr8:128870589,chr8:128892771,chr8:128900404,chr8:128892598,chr8:128841520,chr8:128881589,chr8:128881602,chr8:128872868,chr8:128881583,chr8:128872868,chr8:128841399,chr8:128899926,chr8:128841470,chr8:128881490,chr8:128899883,chr8:128892680,chr8:128892596,chr8:128836192,chr8:128853675,chr8:128870543,chr8:128851887,chr8:128854514,chr8:128869278,chr8:128870386,chr8:128821025,chr8:128905615,chr8:128854772,chr8:128814585,chr8:128821563,chr8:128870639,chr8:128854095,chr8:128863172,chr8:128870572,chr8:128854083,chr8:128871300,chr8:128854095,chr8:128870533,chr8:128863085,chr8:128869292,chr8:128820507,chr8:128871245,chr8:128820485,chr8:128851606,chr8:128854191,chr8:128814681,chr8:128863082,chr8:128869289,chr8:128871273,chr8:128820513,chr8:128895879,chr8:128820475,chr8:128820524,chr8:128854236,chr8:128870408,chr8:128854173,chr8:128820500,chr8:128820497,chr8:128870443,chr8:128820506,chr8:128820522,chr8:128853662,chr8:128869678,chr8:128871327,chr8:128907476,chr8:128869675,chr8:128871327,chr8:128907473,chr8:128820523,chr8:128871161,chr8:128814584,chr8:128821562,chr8:128854190,chr8:128820512,chr8:128853719,chr8:128853743,chr8:128851603,chr8:128820523,chr8:128820520,chr8:128907550,chr8:128820529,chr8:128863169,chr8:128869387,chr8:128870569,chr8:128871192,chr8:128907633,chr8:128907625,chr8:128863187,chr8:128851661,chr8:128870518,chr8:128907633,chr8:128905667,chr8:128821586,chr8:128907626,chr8:128869364,chr8:128820497,chr8:128854256,chr8:128863042,chr8:128820580,chr8:128863063,chr8:128907515,chr8:128841514,chr8:128841472,chr8:128841514,chr8:128816714,chr8:128816845,chr8:128816884,chr8:128919481,chr8:128916087,chr8:128916185,chr8:128821001,chr8:128820459,chr8:128821059,chr8:128821067,chr8:128821090,chr8:128820555,chr8:128820563,chr8:128824572,chr8:128825399,chr8:128825440,chr8:128825440,chr8:128824718,chr8:128826142,chr8:128826207,chr8:128826079 chr8:126665017,chr8:126680461,chr8:126665140,chr8:126680432,chr8:126664973,chr8:126691875,chr8:126676292,chr8:126676139,chr8:126674877,chr8:126675692,chr8:126679449,chr8:126676132,chr8:126678822,chr8:126676140,chr8:126675682,chr8:126676131,chr8:126676298,chr8:126679360,chr8:126675774,chr8:126676303,chr8:126677571,chr8:126679468,chr8:126679471,chr8:126677516,chr8:126677515,chr8:126663336,chr8:126675108,chr8:126679362,chr8:126676155,chr8:126679501,chr8:126679304,chr8:126675695,chr8:126676265,chr8:126675687,chr8:126677571,chr8:126677595,chr8:126679312,chr8:126665060,chr8:126665043,chr8:126665008,chr8:126665008,chr8:126660426,chr8:126660426,chr8:126665197,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126665094,chr8:126664987,chr8:126665061,chr8:126675680,chr8:126677245,chr8:126676286,chr8:126675074,chr8:126665063,chr8:126664971,chr8:126665060,chr8:126665140,chr8:126676280,chr8:126675122,chr8:126676859,chr8:126665116,chr8:126664989,chr8:126664971,chr8:126682647,chr8:126682647,chr8:126665200,chr8:126660422,chr8:126660423,chr8:126660435,chr8:126663306,chr8:126663306,chr8:126663346,chr8:126663346,chr8:126663389,chr8:126663389,chr8:126663494,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663529,chr8:126663529,chr8:126663531,chr8:126664781,chr8:126664781,chr8:126664825,chr8:126664826,chr8:126665050,chr8:126665079,chr8:126665086,chr8:126665086,chr8:126665098,chr8:126665105,chr8:126665105,chr8:126665110,chr8:126665110,chr8:126665110,chr8:126665122,chr8:126665172,chr8:126669119,chr8:126678875,chr8:126678875,chr8:126678920,chr8:126678988,chr8:126679073,chr8:126679303,chr8:126679303,chr8:126679325,chr8:126679329,chr8:126679329,chr8:126679329,chr8:126679354,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679373,chr8:126679449,chr8:126679485,chr8:126679485,chr8:126679485,chr8:126679491,chr8:126679491,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679520,chr8:126679520,chr8:126679547,chr8:126675043,chr8:126675043,chr8:126675110,chr8:126675110,chr8:126675118,chr8:126675133,chr8:126675181,chr8:126675194,chr8:126675229,chr8:126675251,chr8:126675251,chr8:126675251,chr8:126675641,chr8:126675641,chr8:126675641,chr8:126675707,chr8:126675728,chr8:126675778,chr8:126675778,chr8:126675902,chr8:126675902,chr8:126676104,chr8:126676121,chr8:126676208,chr8:126676208,chr8:126676226,chr8:126676237,chr8:126676237,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677514,chr8:126677598,chr8:126677669,chr8:126677669,chr8:126677681,chr8:126677700,chr8:126677722,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682455,chr8:126682522,chr8:126684172,chr8:126684318,chr8:126676131,chr8:126677696,chr8:126675125,chr8:126675132,chr8:126675140,chr8:126676301,chr8:126675110,chr8:126676283,chr8:126678926,chr8:126678697,chr8:126678690,chr8:126679381,chr8:126682523,chr8:126682647,chr8:126681757 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 300 300 300 50295 6601 ENST00000667305.1 ENST00000651999.1 downstream upstream duplicates(254),low_entropy(1),mismatches(68) GCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25525 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 271 300 300 50295 3220 ENST00000667305.1 ENST00000651999.1 downstream upstream duplicates(248),low_entropy(1),mismappers(32),mismatches(80) GCGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25526 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 95 127 300 3428 3220 ENST00000662410.1 ENST00000651999.1 downstream upstream duplicates(133),mismappers(9),mismatches(77) CCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25527 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 90 109 300 1958 3220 ENST00000661830.1 ENST00000651999.1 downstream upstream duplicates(122),mismappers(9),mismatches(73) GACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25528 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 42 40 300 1672 3220 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(81),mismappers(3),mismatches(73) GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25529 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 26 23 300 828 3220 ENST00000523328.6 ENST00000651999.1 downstream upstream duplicates(89),mismappers(2),mismatches(72) GGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25530 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125679933:+ chr8:126660571-127021174:+ chr8:126692177:+ chr8:127888241,chr8:127888321,chr8:127887649,chr8:127887600,chr8:127893451,chr8:127907113,chr8:127907198,chr8:127907209,chr8:127913080,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127887714,chr8:127888220,chr8:127880879,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127888054,chr8:127880709,chr8:127858346,chr8:127858343,chr8:127857452,chr8:127857018,chr8:127857066,chr8:127857147,chr8:127888158,chr8:127880525,chr8:127880352,chr8:127869343,chr8:127869356,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127887680,chr8:127887637,chr8:127869244,chr8:127880434,chr8:127880350,chr8:127858323,chr8:127857118,chr8:127895269,chr8:127857032,chr8:127859054,chr8:127857046,chr8:127858999,chr8:127857043,chr8:127859027,chr8:127883633,chr8:127903841,chr8:127903939,chr8:127858148,chr8:127858148,chr8:127858295,chr8:127858782,chr8:127858792,chr8:127858806,chr8:127858806,chr8:127859109,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880746,chr8:127880898,chr8:127880452 chr8:125652819,chr8:125652727,chr8:125652816,chr8:125652896,chr8:125662878,chr8:125652872,chr8:125652745,chr8:125652727,chr8:125652956,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651287,chr8:125667116,chr8:125667224,chr8:125667257,chr8:125667227,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652806,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125664012,chr8:125665456,chr8:125666330,chr8:125666829,chr8:125667119,chr8:125667241,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667276,chr8:125671928,chr8:125672074,chr8:125651092,chr8:125663907,chr8:125663911,chr8:125667060,chr8:125667072,chr8:125667060,chr8:125667061,chr8:125667068,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125648182,chr8:125648182,chr8:125652953,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125652850,chr8:125652743,chr8:125652817 NA NA chr8:128900487,chr8:128900567,chr8:128899895,chr8:128899846,chr8:128905697,chr8:128919359,chr8:128919444,chr8:128919455,chr8:128925326,chr8:128892925,chr8:128892925,chr8:128892925,chr8:128899960,chr8:128900466,chr8:128893125,chr8:128905584,chr8:128892955,chr8:128905617,chr8:128900300,chr8:128892955,chr8:128870592,chr8:128870589,chr8:128869698,chr8:128869264,chr8:128869312,chr8:128869393,chr8:128900404,chr8:128892771,chr8:128892598,chr8:128881589,chr8:128881602,chr8:128872868,chr8:128881583,chr8:128872868,chr8:128899926,chr8:128899883,chr8:128881490,chr8:128892680,chr8:128892596,chr8:128870569,chr8:128869364,chr8:128907515,chr8:128869278,chr8:128871300,chr8:128869292,chr8:128871245,chr8:128869289,chr8:128871273,chr8:128895879,chr8:128916087,chr8:128916185,chr8:128870394,chr8:128870394,chr8:128870541,chr8:128871028,chr8:128871038,chr8:128871052,chr8:128871052,chr8:128871355,chr8:128881535,chr8:128881556,chr8:128881569,chr8:128881684,chr8:128892843,chr8:128892926,chr8:128892919,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892992,chr8:128893144,chr8:128892698 chr8:126665063,chr8:126664971,chr8:126665060,chr8:126665140,chr8:126675122,chr8:126665116,chr8:126664989,chr8:126664971,chr8:126665200,chr8:126660422,chr8:126660423,chr8:126660435,chr8:126663306,chr8:126663346,chr8:126663346,chr8:126663389,chr8:126663494,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663529,chr8:126663531,chr8:126679360,chr8:126679468,chr8:126679501,chr8:126679471,chr8:126664781,chr8:126664781,chr8:126664825,chr8:126665050,chr8:126665079,chr8:126665086,chr8:126665086,chr8:126665098,chr8:126665105,chr8:126665110,chr8:126665110,chr8:126665122,chr8:126665172,chr8:126676256,chr8:126677700,chr8:126678574,chr8:126679073,chr8:126679363,chr8:126679485,chr8:126679491,chr8:126679518,chr8:126679518,chr8:126679520,chr8:126684172,chr8:126684318,chr8:126663336,chr8:126676151,chr8:126676155,chr8:126679304,chr8:126679316,chr8:126679304,chr8:126679305,chr8:126679312,chr8:126665060,chr8:126665043,chr8:126665008,chr8:126665008,chr8:126660426,chr8:126660426,chr8:126665197,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126665094,chr8:126664987,chr8:126665061 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 17 26 300 1958 6601 ENST00000661830.1 ENST00000651999.1 downstream upstream duplicates(68),mismatches(64) GCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___...AGATCATCTGGTTCCATCTTGTCTTGAG...___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25531 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125679933:+ chr8:126660571-127021174:+ chr8:126692177:+ chr8:127824906,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127832772,chr8:127839300,chr8:127839328,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127857452,chr8:127857543,chr8:127857571,chr8:127857674,chr8:127857018,chr8:127857147,chr8:127858451,chr8:127858451,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858295,chr8:127858328,chr8:127858782,chr8:127858850,chr8:127858945,chr8:127859008,chr8:127859024,chr8:127859024,chr8:127859109,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880746,chr8:127880898,chr8:127880452,chr8:127802576,chr8:127802276,chr8:127802415,chr8:127802445,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127887600,chr8:127893429,chr8:127893451,chr8:127895803,chr8:127907113,chr8:127907198,chr8:127907209,chr8:127907209,chr8:127907218,chr8:127913080,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127841461,chr8:127887714,chr8:127880879,chr8:127888220,chr8:127841333,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127827096,chr8:127880709,chr8:127888054,chr8:127841826,chr8:127858346,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127829153,chr8:127887680,chr8:127829224,chr8:127869244,chr8:127887637,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127841429,chr8:127858297,chr8:127839641,chr8:127842268,chr8:127857032,chr8:127858140,chr8:127808779,chr8:127893369,chr8:127842526,chr8:127802339,chr8:127809317,chr8:127858393,chr8:127841849,chr8:127850926,chr8:127858326,chr8:127841837,chr8:127859054,chr8:127841849,chr8:127858287,chr8:127850839,chr8:127857046,chr8:127808261,chr8:127858999,chr8:127808239,chr8:127839360,chr8:127841945,chr8:127802435,chr8:127850836,chr8:127857043,chr8:127859027,chr8:127808267,chr8:127883633,chr8:127808229,chr8:127808278,chr8:127841990,chr8:127858162,chr8:127841927,chr8:127808254,chr8:127808251,chr8:127858197,chr8:127808260,chr8:127808276,chr8:127841416,chr8:127857432,chr8:127859081,chr8:127895230,chr8:127857429,chr8:127859081,chr8:127895227,chr8:127808277,chr8:127858915,chr8:127802338,chr8:127809316,chr8:127841944,chr8:127808266,chr8:127841473,chr8:127841497,chr8:127839357,chr8:127808277,chr8:127808274,chr8:127895304,chr8:127808283,chr8:127850923,chr8:127857141,chr8:127858323,chr8:127858946,chr8:127895387,chr8:127895379,chr8:127850941,chr8:127839415,chr8:127858272,chr8:127895387,chr8:127893421,chr8:127809340,chr8:127895380,chr8:127857118,chr8:127808251,chr8:127842010,chr8:127850796,chr8:127808334,chr8:127850817,chr8:127895269,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127804468,chr8:127804599,chr8:127804638,chr8:127907235,chr8:127903841,chr8:127903939,chr8:127808755,chr8:127808213,chr8:127808813,chr8:127808821,chr8:127808844,chr8:127808309,chr8:127808317,chr8:127812326,chr8:127813153,chr8:127813194,chr8:127813194,chr8:127812472,chr8:127813896,chr8:127813961,chr8:127813833 chr8:125652773,chr8:125668217,chr8:125652896,chr8:125668188,chr8:125652729,chr8:125679631,chr8:125664048,chr8:125663895,chr8:125662633,chr8:125663448,chr8:125667205,chr8:125663888,chr8:125666578,chr8:125663896,chr8:125663438,chr8:125663887,chr8:125664054,chr8:125667116,chr8:125663530,chr8:125664059,chr8:125665327,chr8:125667224,chr8:125667227,chr8:125665272,chr8:125665271,chr8:125651092,chr8:125662864,chr8:125667118,chr8:125663911,chr8:125667257,chr8:125667060,chr8:125663451,chr8:125664021,chr8:125663443,chr8:125665327,chr8:125665351,chr8:125667068,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125648182,chr8:125648182,chr8:125652953,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125652850,chr8:125652743,chr8:125652817,chr8:125663436,chr8:125665001,chr8:125664042,chr8:125662830,chr8:125652819,chr8:125652727,chr8:125652816,chr8:125652896,chr8:125664036,chr8:125662878,chr8:125664615,chr8:125652872,chr8:125652745,chr8:125652727,chr8:125670403,chr8:125670403,chr8:125652956,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651285,chr8:125651287,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652582,chr8:125652806,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125656875,chr8:125666631,chr8:125666631,chr8:125666676,chr8:125666744,chr8:125666829,chr8:125667059,chr8:125667059,chr8:125667081,chr8:125667085,chr8:125667085,chr8:125667085,chr8:125667110,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667129,chr8:125667205,chr8:125667241,chr8:125667241,chr8:125667241,chr8:125667247,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667276,chr8:125667276,chr8:125667303,chr8:125662799,chr8:125662799,chr8:125662866,chr8:125662866,chr8:125662874,chr8:125662889,chr8:125662937,chr8:125662950,chr8:125662985,chr8:125663007,chr8:125663007,chr8:125663007,chr8:125663397,chr8:125663397,chr8:125663397,chr8:125663463,chr8:125663484,chr8:125663534,chr8:125663534,chr8:125663658,chr8:125663658,chr8:125663860,chr8:125663877,chr8:125663964,chr8:125663964,chr8:125663982,chr8:125663993,chr8:125663993,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664096,chr8:125664418,chr8:125665270,chr8:125665270,chr8:125665354,chr8:125665425,chr8:125665425,chr8:125665437,chr8:125665456,chr8:125665478,chr8:125665800,chr8:125665800,chr8:125665800,chr8:125666330,chr8:125666330,chr8:125668106,chr8:125668242,chr8:125668273,chr8:125669992,chr8:125670128,chr8:125670211,chr8:125670278,chr8:125671928,chr8:125672074,chr8:125663887,chr8:125665452,chr8:125662881,chr8:125662888,chr8:125662896,chr8:125664057,chr8:125662866,chr8:125664039,chr8:125666682,chr8:125666453,chr8:125666446,chr8:125667137,chr8:125670279,chr8:125670403,chr8:125669513 NA NA chr8:128837152,chr8:128841460,chr8:128841489,chr8:128841489,chr8:128841282,chr8:128845018,chr8:128851546,chr8:128851574,chr8:128853976,chr8:128854154,chr8:128853619,chr8:128853775,chr8:128854782,chr8:128863003,chr8:128863033,chr8:128863057,chr8:128863132,chr8:128869698,chr8:128869789,chr8:128869817,chr8:128869920,chr8:128869264,chr8:128869393,chr8:128870697,chr8:128870697,chr8:128870394,chr8:128870413,chr8:128870432,chr8:128870541,chr8:128870574,chr8:128871028,chr8:128871096,chr8:128871191,chr8:128871254,chr8:128871270,chr8:128871270,chr8:128871355,chr8:128881535,chr8:128881556,chr8:128881569,chr8:128881684,chr8:128892843,chr8:128892926,chr8:128892919,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892992,chr8:128893144,chr8:128892698,chr8:128814822,chr8:128814522,chr8:128814661,chr8:128814691,chr8:128900487,chr8:128900567,chr8:128899895,chr8:128899846,chr8:128905675,chr8:128905697,chr8:128908049,chr8:128919359,chr8:128919444,chr8:128919455,chr8:128919455,chr8:128919464,chr8:128925326,chr8:128892925,chr8:128892925,chr8:128892925,chr8:128853707,chr8:128899960,chr8:128893125,chr8:128900466,chr8:128853579,chr8:128905584,chr8:128892955,chr8:128905617,chr8:128839342,chr8:128892955,chr8:128900300,chr8:128854072,chr8:128870592,chr8:128870589,chr8:128892771,chr8:128900404,chr8:128892598,chr8:128841520,chr8:128881589,chr8:128881602,chr8:128872868,chr8:128881583,chr8:128872868,chr8:128841399,chr8:128899926,chr8:128841470,chr8:128881490,chr8:128899883,chr8:128892680,chr8:128892596,chr8:128836192,chr8:128853675,chr8:128870543,chr8:128851887,chr8:128854514,chr8:128869278,chr8:128870386,chr8:128821025,chr8:128905615,chr8:128854772,chr8:128814585,chr8:128821563,chr8:128870639,chr8:128854095,chr8:128863172,chr8:128870572,chr8:128854083,chr8:128871300,chr8:128854095,chr8:128870533,chr8:128863085,chr8:128869292,chr8:128820507,chr8:128871245,chr8:128820485,chr8:128851606,chr8:128854191,chr8:128814681,chr8:128863082,chr8:128869289,chr8:128871273,chr8:128820513,chr8:128895879,chr8:128820475,chr8:128820524,chr8:128854236,chr8:128870408,chr8:128854173,chr8:128820500,chr8:128820497,chr8:128870443,chr8:128820506,chr8:128820522,chr8:128853662,chr8:128869678,chr8:128871327,chr8:128907476,chr8:128869675,chr8:128871327,chr8:128907473,chr8:128820523,chr8:128871161,chr8:128814584,chr8:128821562,chr8:128854190,chr8:128820512,chr8:128853719,chr8:128853743,chr8:128851603,chr8:128820523,chr8:128820520,chr8:128907550,chr8:128820529,chr8:128863169,chr8:128869387,chr8:128870569,chr8:128871192,chr8:128907633,chr8:128907625,chr8:128863187,chr8:128851661,chr8:128870518,chr8:128907633,chr8:128905667,chr8:128821586,chr8:128907626,chr8:128869364,chr8:128820497,chr8:128854256,chr8:128863042,chr8:128820580,chr8:128863063,chr8:128907515,chr8:128841514,chr8:128841472,chr8:128841514,chr8:128816714,chr8:128816845,chr8:128816884,chr8:128919481,chr8:128916087,chr8:128916185,chr8:128821001,chr8:128820459,chr8:128821059,chr8:128821067,chr8:128821090,chr8:128820555,chr8:128820563,chr8:128824572,chr8:128825399,chr8:128825440,chr8:128825440,chr8:128824718,chr8:128826142,chr8:128826207,chr8:128826079 chr8:126665017,chr8:126680461,chr8:126665140,chr8:126680432,chr8:126664973,chr8:126691875,chr8:126676292,chr8:126676139,chr8:126674877,chr8:126675692,chr8:126679449,chr8:126676132,chr8:126678822,chr8:126676140,chr8:126675682,chr8:126676131,chr8:126676298,chr8:126679360,chr8:126675774,chr8:126676303,chr8:126677571,chr8:126679468,chr8:126679471,chr8:126677516,chr8:126677515,chr8:126663336,chr8:126675108,chr8:126679362,chr8:126676155,chr8:126679501,chr8:126679304,chr8:126675695,chr8:126676265,chr8:126675687,chr8:126677571,chr8:126677595,chr8:126679312,chr8:126665060,chr8:126665043,chr8:126665008,chr8:126665008,chr8:126660426,chr8:126660426,chr8:126665197,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126665094,chr8:126664987,chr8:126665061,chr8:126675680,chr8:126677245,chr8:126676286,chr8:126675074,chr8:126665063,chr8:126664971,chr8:126665060,chr8:126665140,chr8:126676280,chr8:126675122,chr8:126676859,chr8:126665116,chr8:126664989,chr8:126664971,chr8:126682647,chr8:126682647,chr8:126665200,chr8:126660422,chr8:126660423,chr8:126660435,chr8:126663306,chr8:126663306,chr8:126663346,chr8:126663346,chr8:126663389,chr8:126663389,chr8:126663494,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663529,chr8:126663529,chr8:126663531,chr8:126664781,chr8:126664781,chr8:126664825,chr8:126664826,chr8:126665050,chr8:126665079,chr8:126665086,chr8:126665086,chr8:126665098,chr8:126665105,chr8:126665105,chr8:126665110,chr8:126665110,chr8:126665110,chr8:126665122,chr8:126665172,chr8:126669119,chr8:126678875,chr8:126678875,chr8:126678920,chr8:126678988,chr8:126679073,chr8:126679303,chr8:126679303,chr8:126679325,chr8:126679329,chr8:126679329,chr8:126679329,chr8:126679354,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679373,chr8:126679449,chr8:126679485,chr8:126679485,chr8:126679485,chr8:126679491,chr8:126679491,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679520,chr8:126679520,chr8:126679547,chr8:126675043,chr8:126675043,chr8:126675110,chr8:126675110,chr8:126675118,chr8:126675133,chr8:126675181,chr8:126675194,chr8:126675229,chr8:126675251,chr8:126675251,chr8:126675251,chr8:126675641,chr8:126675641,chr8:126675641,chr8:126675707,chr8:126675728,chr8:126675778,chr8:126675778,chr8:126675902,chr8:126675902,chr8:126676104,chr8:126676121,chr8:126676208,chr8:126676208,chr8:126676226,chr8:126676237,chr8:126676237,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677514,chr8:126677598,chr8:126677669,chr8:126677669,chr8:126677681,chr8:126677700,chr8:126677722,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682455,chr8:126682522,chr8:126684172,chr8:126684318,chr8:126676131,chr8:126677696,chr8:126675125,chr8:126675132,chr8:126675140,chr8:126676301,chr8:126675110,chr8:126676283,chr8:126678926,chr8:126678697,chr8:126678690,chr8:126679381,chr8:126682523,chr8:126682647,chr8:126681757 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 16 17 300 3428 6601 ENST00000662410.1 ENST00000651999.1 downstream upstream duplicates(58),low_entropy(1),mismatches(60) GGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25532 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125649982:+ chr8:126660571-127021174:+ chr8:126662226:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 7 13 300 1958 146 ENST00000661830.1 ENST00000651999.1 downstream upstream duplicates(59),low_entropy(1),mismatches(68) GACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATTAAGGGGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|CTCCAGCTTTCTGCTCTGATGTCTGCACTCAAGCTTTGGAGGCTCTTGCCAAG___CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAGGTAAAG...___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25533 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125679933:+ chr8:126660571-127021174:+ chr8:126692177:+ chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127857452,chr8:127857571,chr8:127857674,chr8:127857018,chr8:127857066,chr8:127857147,chr8:127858148,chr8:127858167,chr8:127858295,chr8:127858782,chr8:127858792,chr8:127858806,chr8:127859024,chr8:127859024,chr8:127858806,chr8:127859109,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880746,chr8:127880898,chr8:127880452,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127887600,chr8:127893429,chr8:127893451,chr8:127907113,chr8:127907198,chr8:127907209,chr8:127913080,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127887714,chr8:127841461,chr8:127880879,chr8:127888220,chr8:127893338,chr8:127841333,chr8:127880709,chr8:127893371,chr8:127880709,chr8:127888054,chr8:127827096,chr8:127858346,chr8:127841826,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127887680,chr8:127829153,chr8:127869244,chr8:127887637,chr8:127829224,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127858162,chr8:127858197,chr8:127895230,chr8:127895227,chr8:127895304,chr8:127850923,chr8:127858323,chr8:127895387,chr8:127895379,chr8:127850941,chr8:127839415,chr8:127895387,chr8:127895380,chr8:127857118,chr8:127842010,chr8:127895269,chr8:127841429,chr8:127839641,chr8:127857032,chr8:127841849,chr8:127859054,chr8:127841837,chr8:127841849,chr8:127857046,chr8:127858999,chr8:127857043,chr8:127859027,chr8:127839360,chr8:127841945,chr8:127883633,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127824906,chr8:127903841,chr8:127903939,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127839300,chr8:127839317,chr8:127841373 chr8:125663896,chr8:125663438,chr8:125663887,chr8:125664054,chr8:125667116,chr8:125665377,chr8:125665327,chr8:125667224,chr8:125667257,chr8:125667227,chr8:125651092,chr8:125662864,chr8:125663911,chr8:125667060,chr8:125667072,chr8:125667060,chr8:125665327,chr8:125665351,chr8:125667061,chr8:125667068,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125648182,chr8:125648182,chr8:125652953,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125652850,chr8:125652743,chr8:125652817,chr8:125652819,chr8:125652727,chr8:125652816,chr8:125652896,chr8:125664036,chr8:125662878,chr8:125652872,chr8:125652745,chr8:125652727,chr8:125652956,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651285,chr8:125651287,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652582,chr8:125652806,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125656875,chr8:125662799,chr8:125662889,chr8:125663007,chr8:125663397,chr8:125663993,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664096,chr8:125664418,chr8:125665270,chr8:125665354,chr8:125665437,chr8:125665456,chr8:125665800,chr8:125666330,chr8:125666631,chr8:125666676,chr8:125666829,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667129,chr8:125667241,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667276,chr8:125668106,chr8:125668242,chr8:125668273,chr8:125652773,chr8:125671928,chr8:125672074,chr8:125668217,chr8:125652896,chr8:125668188,chr8:125652729,chr8:125665372,chr8:125665351,chr8:125667205 NA NA chr8:128863003,chr8:128863033,chr8:128863057,chr8:128863132,chr8:128869698,chr8:128869817,chr8:128869920,chr8:128869264,chr8:128869312,chr8:128869393,chr8:128870394,chr8:128870413,chr8:128870541,chr8:128871028,chr8:128871038,chr8:128871052,chr8:128871270,chr8:128871270,chr8:128871052,chr8:128871355,chr8:128881535,chr8:128881556,chr8:128881569,chr8:128881684,chr8:128892843,chr8:128892926,chr8:128892919,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892992,chr8:128893144,chr8:128892698,chr8:128900487,chr8:128900567,chr8:128899895,chr8:128899846,chr8:128905675,chr8:128905697,chr8:128919359,chr8:128919444,chr8:128919455,chr8:128925326,chr8:128892925,chr8:128892925,chr8:128892925,chr8:128899960,chr8:128853707,chr8:128893125,chr8:128900466,chr8:128905584,chr8:128853579,chr8:128892955,chr8:128905617,chr8:128892955,chr8:128900300,chr8:128839342,chr8:128870592,chr8:128854072,chr8:128870589,chr8:128892771,chr8:128900404,chr8:128892598,chr8:128841520,chr8:128881589,chr8:128881602,chr8:128872868,chr8:128881583,chr8:128872868,chr8:128899926,chr8:128841399,chr8:128881490,chr8:128899883,chr8:128841470,chr8:128892680,chr8:128892596,chr8:128836192,chr8:128870408,chr8:128870443,chr8:128907476,chr8:128907473,chr8:128907550,chr8:128863169,chr8:128870569,chr8:128907633,chr8:128907625,chr8:128863187,chr8:128851661,chr8:128907633,chr8:128907626,chr8:128869364,chr8:128854256,chr8:128907515,chr8:128853675,chr8:128851887,chr8:128869278,chr8:128854095,chr8:128871300,chr8:128854083,chr8:128854095,chr8:128869292,chr8:128871245,chr8:128869289,chr8:128871273,chr8:128851606,chr8:128854191,chr8:128895879,chr8:128841514,chr8:128841472,chr8:128841514,chr8:128837152,chr8:128916087,chr8:128916185,chr8:128841460,chr8:128841489,chr8:128841489,chr8:128841282,chr8:128851546,chr8:128851563,chr8:128853619 chr8:126676140,chr8:126675682,chr8:126676131,chr8:126676298,chr8:126679360,chr8:126677621,chr8:126677571,chr8:126679468,chr8:126679501,chr8:126679471,chr8:126663336,chr8:126675108,chr8:126676155,chr8:126679304,chr8:126679316,chr8:126679304,chr8:126677571,chr8:126677595,chr8:126679305,chr8:126679312,chr8:126665060,chr8:126665043,chr8:126665008,chr8:126665008,chr8:126660426,chr8:126660426,chr8:126665197,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126665094,chr8:126664987,chr8:126665061,chr8:126665063,chr8:126664971,chr8:126665060,chr8:126665140,chr8:126676280,chr8:126675122,chr8:126665116,chr8:126664989,chr8:126664971,chr8:126665200,chr8:126660422,chr8:126660423,chr8:126660435,chr8:126663306,chr8:126663306,chr8:126663346,chr8:126663346,chr8:126663389,chr8:126663389,chr8:126663494,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663529,chr8:126663529,chr8:126663531,chr8:126664781,chr8:126664781,chr8:126664825,chr8:126664826,chr8:126665050,chr8:126665079,chr8:126665086,chr8:126665086,chr8:126665098,chr8:126665105,chr8:126665105,chr8:126665110,chr8:126665110,chr8:126665110,chr8:126665122,chr8:126665172,chr8:126669119,chr8:126675043,chr8:126675133,chr8:126675251,chr8:126675641,chr8:126676237,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677598,chr8:126677681,chr8:126677700,chr8:126678044,chr8:126678574,chr8:126678875,chr8:126678920,chr8:126679073,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679373,chr8:126679485,chr8:126679491,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679520,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126665017,chr8:126684172,chr8:126684318,chr8:126680461,chr8:126665140,chr8:126680432,chr8:126664973,chr8:126677616,chr8:126677595,chr8:126679449 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 11 8 300 828 6601 ENST00000523328.6 ENST00000651999.1 downstream upstream duplicates(63),mismatches(61) ACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___AGATCATCTGGTTCCATCTTGTC...___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25534 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125649982:+ chr8:126660571-127021174:+ chr8:126662226:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 9 17 300 50295 146 ENST00000667305.1 ENST00000651999.1 downstream upstream duplicates(69),mismappers(2),mismatches(74) CCCGCGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTCCAGCTTTCTGCTCTGATGTCTGCACTCAAGCTTTGGAGGCTCTTGCCAAG___CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25535 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125679933:+ chr8:126660571-127021174:+ chr8:126692177:+ chr8:127824906,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127832772,chr8:127839300,chr8:127839328,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127857452,chr8:127857543,chr8:127857571,chr8:127857674,chr8:127857018,chr8:127857147,chr8:127858451,chr8:127858451,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858295,chr8:127858328,chr8:127858782,chr8:127858850,chr8:127858945,chr8:127859008,chr8:127859024,chr8:127859024,chr8:127859109,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880746,chr8:127880898,chr8:127880452,chr8:127802576,chr8:127802276,chr8:127802415,chr8:127802445,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127887600,chr8:127893429,chr8:127893451,chr8:127895803,chr8:127907113,chr8:127907198,chr8:127907209,chr8:127907209,chr8:127907218,chr8:127913080,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127841461,chr8:127887714,chr8:127880879,chr8:127888220,chr8:127841333,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127827096,chr8:127880709,chr8:127888054,chr8:127841826,chr8:127858346,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127829153,chr8:127887680,chr8:127829224,chr8:127869244,chr8:127887637,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127841429,chr8:127858297,chr8:127839641,chr8:127842268,chr8:127857032,chr8:127858140,chr8:127808779,chr8:127893369,chr8:127842526,chr8:127802339,chr8:127809317,chr8:127858393,chr8:127841849,chr8:127850926,chr8:127858326,chr8:127841837,chr8:127859054,chr8:127841849,chr8:127858287,chr8:127850839,chr8:127857046,chr8:127808261,chr8:127858999,chr8:127808239,chr8:127839360,chr8:127841945,chr8:127802435,chr8:127850836,chr8:127857043,chr8:127859027,chr8:127808267,chr8:127883633,chr8:127808229,chr8:127808278,chr8:127841990,chr8:127858162,chr8:127841927,chr8:127808254,chr8:127808251,chr8:127858197,chr8:127808260,chr8:127808276,chr8:127841416,chr8:127857432,chr8:127859081,chr8:127895230,chr8:127857429,chr8:127859081,chr8:127895227,chr8:127808277,chr8:127858915,chr8:127802338,chr8:127809316,chr8:127841944,chr8:127808266,chr8:127841473,chr8:127841497,chr8:127839357,chr8:127808277,chr8:127808274,chr8:127895304,chr8:127808283,chr8:127850923,chr8:127857141,chr8:127858323,chr8:127858946,chr8:127895387,chr8:127895379,chr8:127850941,chr8:127839415,chr8:127858272,chr8:127895387,chr8:127893421,chr8:127809340,chr8:127895380,chr8:127857118,chr8:127808251,chr8:127842010,chr8:127850796,chr8:127808334,chr8:127850817,chr8:127895269,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127804468,chr8:127804599,chr8:127804638,chr8:127907235,chr8:127903841,chr8:127903939,chr8:127808755,chr8:127808213,chr8:127808813,chr8:127808821,chr8:127808844,chr8:127808309,chr8:127808317,chr8:127812326,chr8:127813153,chr8:127813194,chr8:127813194,chr8:127812472,chr8:127813896,chr8:127813961,chr8:127813833 chr8:125652773,chr8:125668217,chr8:125652896,chr8:125668188,chr8:125652729,chr8:125679631,chr8:125664048,chr8:125663895,chr8:125662633,chr8:125663448,chr8:125667205,chr8:125663888,chr8:125666578,chr8:125663896,chr8:125663438,chr8:125663887,chr8:125664054,chr8:125667116,chr8:125663530,chr8:125664059,chr8:125665327,chr8:125667224,chr8:125667227,chr8:125665272,chr8:125665271,chr8:125651092,chr8:125662864,chr8:125667118,chr8:125663911,chr8:125667257,chr8:125667060,chr8:125663451,chr8:125664021,chr8:125663443,chr8:125665327,chr8:125665351,chr8:125667068,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125648182,chr8:125648182,chr8:125652953,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125652850,chr8:125652743,chr8:125652817,chr8:125663436,chr8:125665001,chr8:125664042,chr8:125662830,chr8:125652819,chr8:125652727,chr8:125652816,chr8:125652896,chr8:125664036,chr8:125662878,chr8:125664615,chr8:125652872,chr8:125652745,chr8:125652727,chr8:125670403,chr8:125670403,chr8:125652956,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651285,chr8:125651287,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652582,chr8:125652806,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125656875,chr8:125666631,chr8:125666631,chr8:125666676,chr8:125666744,chr8:125666829,chr8:125667059,chr8:125667059,chr8:125667081,chr8:125667085,chr8:125667085,chr8:125667085,chr8:125667110,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667129,chr8:125667205,chr8:125667241,chr8:125667241,chr8:125667241,chr8:125667247,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667276,chr8:125667276,chr8:125667303,chr8:125662799,chr8:125662799,chr8:125662866,chr8:125662866,chr8:125662874,chr8:125662889,chr8:125662937,chr8:125662950,chr8:125662985,chr8:125663007,chr8:125663007,chr8:125663007,chr8:125663397,chr8:125663397,chr8:125663397,chr8:125663463,chr8:125663484,chr8:125663534,chr8:125663534,chr8:125663658,chr8:125663658,chr8:125663860,chr8:125663877,chr8:125663964,chr8:125663964,chr8:125663982,chr8:125663993,chr8:125663993,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664012,chr8:125664096,chr8:125664418,chr8:125665270,chr8:125665270,chr8:125665354,chr8:125665425,chr8:125665425,chr8:125665437,chr8:125665456,chr8:125665478,chr8:125665800,chr8:125665800,chr8:125665800,chr8:125666330,chr8:125666330,chr8:125668106,chr8:125668242,chr8:125668273,chr8:125669992,chr8:125670128,chr8:125670211,chr8:125670278,chr8:125671928,chr8:125672074,chr8:125663887,chr8:125665452,chr8:125662881,chr8:125662888,chr8:125662896,chr8:125664057,chr8:125662866,chr8:125664039,chr8:125666682,chr8:125666453,chr8:125666446,chr8:125667137,chr8:125670279,chr8:125670403,chr8:125669513 NA NA chr8:128837152,chr8:128841460,chr8:128841489,chr8:128841489,chr8:128841282,chr8:128845018,chr8:128851546,chr8:128851574,chr8:128853976,chr8:128854154,chr8:128853619,chr8:128853775,chr8:128854782,chr8:128863003,chr8:128863033,chr8:128863057,chr8:128863132,chr8:128869698,chr8:128869789,chr8:128869817,chr8:128869920,chr8:128869264,chr8:128869393,chr8:128870697,chr8:128870697,chr8:128870394,chr8:128870413,chr8:128870432,chr8:128870541,chr8:128870574,chr8:128871028,chr8:128871096,chr8:128871191,chr8:128871254,chr8:128871270,chr8:128871270,chr8:128871355,chr8:128881535,chr8:128881556,chr8:128881569,chr8:128881684,chr8:128892843,chr8:128892926,chr8:128892919,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892992,chr8:128893144,chr8:128892698,chr8:128814822,chr8:128814522,chr8:128814661,chr8:128814691,chr8:128900487,chr8:128900567,chr8:128899895,chr8:128899846,chr8:128905675,chr8:128905697,chr8:128908049,chr8:128919359,chr8:128919444,chr8:128919455,chr8:128919455,chr8:128919464,chr8:128925326,chr8:128892925,chr8:128892925,chr8:128892925,chr8:128853707,chr8:128899960,chr8:128893125,chr8:128900466,chr8:128853579,chr8:128905584,chr8:128892955,chr8:128905617,chr8:128839342,chr8:128892955,chr8:128900300,chr8:128854072,chr8:128870592,chr8:128870589,chr8:128892771,chr8:128900404,chr8:128892598,chr8:128841520,chr8:128881589,chr8:128881602,chr8:128872868,chr8:128881583,chr8:128872868,chr8:128841399,chr8:128899926,chr8:128841470,chr8:128881490,chr8:128899883,chr8:128892680,chr8:128892596,chr8:128836192,chr8:128853675,chr8:128870543,chr8:128851887,chr8:128854514,chr8:128869278,chr8:128870386,chr8:128821025,chr8:128905615,chr8:128854772,chr8:128814585,chr8:128821563,chr8:128870639,chr8:128854095,chr8:128863172,chr8:128870572,chr8:128854083,chr8:128871300,chr8:128854095,chr8:128870533,chr8:128863085,chr8:128869292,chr8:128820507,chr8:128871245,chr8:128820485,chr8:128851606,chr8:128854191,chr8:128814681,chr8:128863082,chr8:128869289,chr8:128871273,chr8:128820513,chr8:128895879,chr8:128820475,chr8:128820524,chr8:128854236,chr8:128870408,chr8:128854173,chr8:128820500,chr8:128820497,chr8:128870443,chr8:128820506,chr8:128820522,chr8:128853662,chr8:128869678,chr8:128871327,chr8:128907476,chr8:128869675,chr8:128871327,chr8:128907473,chr8:128820523,chr8:128871161,chr8:128814584,chr8:128821562,chr8:128854190,chr8:128820512,chr8:128853719,chr8:128853743,chr8:128851603,chr8:128820523,chr8:128820520,chr8:128907550,chr8:128820529,chr8:128863169,chr8:128869387,chr8:128870569,chr8:128871192,chr8:128907633,chr8:128907625,chr8:128863187,chr8:128851661,chr8:128870518,chr8:128907633,chr8:128905667,chr8:128821586,chr8:128907626,chr8:128869364,chr8:128820497,chr8:128854256,chr8:128863042,chr8:128820580,chr8:128863063,chr8:128907515,chr8:128841514,chr8:128841472,chr8:128841514,chr8:128816714,chr8:128816845,chr8:128816884,chr8:128919481,chr8:128916087,chr8:128916185,chr8:128821001,chr8:128820459,chr8:128821059,chr8:128821067,chr8:128821090,chr8:128820555,chr8:128820563,chr8:128824572,chr8:128825399,chr8:128825440,chr8:128825440,chr8:128824718,chr8:128826142,chr8:128826207,chr8:128826079 chr8:126665017,chr8:126680461,chr8:126665140,chr8:126680432,chr8:126664973,chr8:126691875,chr8:126676292,chr8:126676139,chr8:126674877,chr8:126675692,chr8:126679449,chr8:126676132,chr8:126678822,chr8:126676140,chr8:126675682,chr8:126676131,chr8:126676298,chr8:126679360,chr8:126675774,chr8:126676303,chr8:126677571,chr8:126679468,chr8:126679471,chr8:126677516,chr8:126677515,chr8:126663336,chr8:126675108,chr8:126679362,chr8:126676155,chr8:126679501,chr8:126679304,chr8:126675695,chr8:126676265,chr8:126675687,chr8:126677571,chr8:126677595,chr8:126679312,chr8:126665060,chr8:126665043,chr8:126665008,chr8:126665008,chr8:126660426,chr8:126660426,chr8:126665197,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126665094,chr8:126664987,chr8:126665061,chr8:126675680,chr8:126677245,chr8:126676286,chr8:126675074,chr8:126665063,chr8:126664971,chr8:126665060,chr8:126665140,chr8:126676280,chr8:126675122,chr8:126676859,chr8:126665116,chr8:126664989,chr8:126664971,chr8:126682647,chr8:126682647,chr8:126665200,chr8:126660422,chr8:126660423,chr8:126660435,chr8:126663306,chr8:126663306,chr8:126663346,chr8:126663346,chr8:126663389,chr8:126663389,chr8:126663494,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663527,chr8:126663529,chr8:126663529,chr8:126663531,chr8:126664781,chr8:126664781,chr8:126664825,chr8:126664826,chr8:126665050,chr8:126665079,chr8:126665086,chr8:126665086,chr8:126665098,chr8:126665105,chr8:126665105,chr8:126665110,chr8:126665110,chr8:126665110,chr8:126665122,chr8:126665172,chr8:126669119,chr8:126678875,chr8:126678875,chr8:126678920,chr8:126678988,chr8:126679073,chr8:126679303,chr8:126679303,chr8:126679325,chr8:126679329,chr8:126679329,chr8:126679329,chr8:126679354,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679363,chr8:126679373,chr8:126679449,chr8:126679485,chr8:126679485,chr8:126679485,chr8:126679491,chr8:126679491,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679518,chr8:126679520,chr8:126679520,chr8:126679547,chr8:126675043,chr8:126675043,chr8:126675110,chr8:126675110,chr8:126675118,chr8:126675133,chr8:126675181,chr8:126675194,chr8:126675229,chr8:126675251,chr8:126675251,chr8:126675251,chr8:126675641,chr8:126675641,chr8:126675641,chr8:126675707,chr8:126675728,chr8:126675778,chr8:126675778,chr8:126675902,chr8:126675902,chr8:126676104,chr8:126676121,chr8:126676208,chr8:126676208,chr8:126676226,chr8:126676237,chr8:126676237,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677514,chr8:126677598,chr8:126677669,chr8:126677669,chr8:126677681,chr8:126677700,chr8:126677722,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682455,chr8:126682522,chr8:126684172,chr8:126684318,chr8:126676131,chr8:126677696,chr8:126675125,chr8:126675132,chr8:126675140,chr8:126676301,chr8:126675110,chr8:126676283,chr8:126678926,chr8:126678697,chr8:126678690,chr8:126679381,chr8:126682523,chr8:126682647,chr8:126681757 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 4 10 300 1672 6601 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(51),mismatches(61) ACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___...TTTCTACAGGATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___AGATCATCTGGTTC...___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25536 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125649982:+ chr8:126660571-127021174:+ chr8:126662226:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 5 6 300 3428 146 ENST00000657183.1 ENST00000651999.1 downstream upstream duplicates(66),mismappers(1),mismatches(71) GCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CTCCAGCTTTCTGCTCTGATGTCTGCACTCAAGCTTTGGAGGCTCTTGCCAAG___CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCC...GTCCCGCGTTGCCCTCAATCTGAAG___GTGCCCTTGCAGTCAGGTTGGAGCTACAGAATTATTTGCTGATTTGCGTCCCCAGCCCTCTCCTTTTTTGTTGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25537 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125886838:+ chr8:126660571-127021174:+ chr8:126899082:+ 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NA NA 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chr8:126678574,chr8:126678574,chr8:126678574,chr8:126678576,chr8:126678576,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682443,chr8:126682455,chr8:126682455,chr8:126682488,chr8:126682522,chr8:126682522,chr8:126682522,chr8:126682640,chr8:126684172,chr8:126684318,chr8:126710021,chr8:126710046,chr8:126682647,chr8:126711522,chr8:126682594,chr8:126710010,chr8:126711530,chr8:126682662,chr8:126711559,chr8:126711435,chr8:126711521,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693384,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693403,chr8:126693420,chr8:126693480,chr8:126693482,chr8:126693482,chr8:126695156,chr8:126695188,chr8:126695201,chr8:126695217,chr8:126695229,chr8:126695229,chr8:126695351,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695366,chr8:126695372,chr8:126695372,chr8:126696404,chr8:126696404,chr8:126696404,chr8:126696605,chr8:126696696,chr8:126696708,chr8:126696847,chr8:126696858,chr8:126697771,chr8:126697771,chr8:126697807,chr8:126697807,chr8:126697824,chr8:126697825,chr8:126697847,chr8:126697847,chr8:126697848,chr8:126697913,chr8:126697955,chr8:126697958,chr8:126697958,chr8:126697983,chr8:126698086,chr8:126698086,chr8:126698086,chr8:126698094,chr8:126698094,chr8:126698135,chr8:126697176,chr8:126698302,chr8:126701616,chr8:126701649,chr8:126701654,chr8:126701724,chr8:126701727,chr8:126702949,chr8:126703004,chr8:126703057,chr8:126703087,chr8:126702724,chr8:126702724,chr8:126702724,chr8:126702728,chr8:126702772,chr8:126702888,chr8:126704679,chr8:126704679,chr8:126704679,chr8:126704706,chr8:126705325,chr8:126705669,chr8:126704471,chr8:126704471,chr8:126705903,chr8:126705913,chr8:126705913,chr8:126705987,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126706019,chr8:126706019,chr8:126706036,chr8:126704497,chr8:126704497,chr8:126704497,chr8:126706217,chr8:126706217,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126704514,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704656,chr8:126709983,chr8:126709987,chr8:126710002,chr8:126711464,chr8:126711464,chr8:126711464,chr8:126711478,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711518,chr8:126711518,chr8:126711518,chr8:126711528,chr8:126711528,chr8:126711528,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711584,chr8:126711612,chr8:126711642,chr8:126711642,chr8:126711645,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711671,chr8:126711700,chr8:126712210,chr8:126712210,chr8:126712210,chr8:126710803,chr8:126710976,chr8:126710976,chr8:126710976,chr8:126710976,chr8:126720940,chr8:126720295,chr8:126728748,chr8:126731590,chr8:126731590,chr8:126731648,chr8:126731648,chr8:126731744,chr8:126731744,chr8:126731744,chr8:126678821,chr8:126693274,chr8:126862550,chr8:126675687,chr8:126885301,chr8:126678812,chr8:126885328,chr8:126678825,chr8:126677631,chr8:126693423,chr8:126711530,chr8:126675710,chr8:126885335,chr8:126711663,chr8:126693416,chr8:126885416,chr8:126693441,chr8:126711528,chr8:126677696,chr8:126711662,chr8:126676301,chr8:126862499,chr8:126885344,chr8:126675110,chr8:126711644,chr8:126877026,chr8:126862487,chr8:126676131,chr8:126885345,chr8:126675125,chr8:126711644,chr8:126675132,chr8:126885380,chr8:126675140,chr8:126885380,chr8:126711598,chr8:126675108,chr8:126885384,chr8:126677686,chr8:126711599,chr8:126693429,chr8:126693444,chr8:126711475,chr8:126675389,chr8:126885205,chr8:126711434 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 7 4 299 50295 3357 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(93),mismappers(1),mismatches(25) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|AGATCATCTGGTTCCATCTTGTCTTGAGAATGGACATCAAAGTACTATTTTTGTTGTGATTGTTCAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25538 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125649982:+ chr8:126660571-127021174:+ chr8:126662226:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 3 1 300 1672 146 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(55),mismatches(71) TGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|CTCCAGCTTTCTGCTCTGATGTCTGCACTCAAGCTTTGGAGGCTCTTGCCAAG___CATTCACCCTCACAGGTTCTGGAACAAGCTCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25539 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125725748:+ chr8:126660571-127021174:+ chr8:126737992:+ chr8:127913029,chr8:127872360,chr8:127880656,chr8:127844170,chr8:127872267,chr8:127880482,chr8:127844208,chr8:127863331,chr8:127912920,chr8:127863338,chr8:127880827,chr8:127912924,chr8:127872226,chr8:127880836,chr8:127913091,chr8:127880894,chr8:127871682,chr8:127815978,chr8:127815962,chr8:127815071,chr8:127815133,chr8:127822452,chr8:127824457,chr8:127824906,chr8:127825086,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127829036,chr8:127832772,chr8:127838479,chr8:127838475,chr8:127838537,chr8:127838713,chr8:127838713,chr8:127837932,chr8:127839300,chr8:127839300,chr8:127839328,chr8:127839317,chr8:127839317,chr8:127837957,chr8:127839453,chr8:127839453,chr8:127839490,chr8:127839490,chr8:127839574,chr8:127838003,chr8:127837988,chr8:127837988,chr8:127837988,chr8:127838008,chr8:127838189,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127842536,chr8:127844128,chr8:127843728,chr8:127843728,chr8:127843744,chr8:127843693,chr8:127844015,chr8:127845246,chr8:127847134,chr8:127847233,chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127857018,chr8:127857066,chr8:127857060,chr8:127857168,chr8:127856357,chr8:127857147,chr8:127856372,chr8:127857452,chr8:127857564,chr8:127857564,chr8:127857564,chr8:127857543,chr8:127857571,chr8:127857571,chr8:127857674,chr8:127857674,chr8:127857694,chr8:127856452,chr8:127856452,chr8:127856435,chr8:127858451,chr8:127858451,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858295,chr8:127858328,chr8:127858782,chr8:127858850,chr8:127858945,chr8:127859008,chr8:127859024,chr8:127859024,chr8:127859109,chr8:127863269,chr8:127863269,chr8:127863323,chr8:127863350,chr8:127863389,chr8:127864661,chr8:127864733,chr8:127802338,chr8:127802359,chr8:127802415,chr8:127802415,chr8:127802445,chr8:127802445,chr8:127802104,chr8:127802576,chr8:127802083,chr8:127802120,chr8:127802105,chr8:127802102,chr8:127802094,chr8:127802180,chr8:127802158,chr8:127802276,chr8:127867726,chr8:127867726,chr8:127868513,chr8:127869231,chr8:127869248,chr8:127869256,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127871790,chr8:127871921,chr8:127871990,chr8:127872189,chr8:127872229,chr8:127872373,chr8:127872373,chr8:127872373,chr8:127872419,chr8:127873598,chr8:127877116,chr8:127879300,chr8:127880584,chr8:127880581,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880673,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880739,chr8:127880746,chr8:127880898,chr8:127880898,chr8:127881121,chr8:127881121,chr8:127881242,chr8:127880348,chr8:127880378,chr8:127880452,chr8:127880452,chr8:127880452,chr8:127883886,chr8:127885220,chr8:127886001,chr8:127803997,chr8:127803951,chr8:127803978,chr8:127804000,chr8:127888012,chr8:127888012,chr8:127888061,chr8:127888061,chr8:127888110,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127888628,chr8:127887600,chr8:127887820,chr8:127887933,chr8:127891494,chr8:127892160,chr8:127892235,chr8:127893429,chr8:127893451,chr8:127892148,chr8:127895803,chr8:127896401,chr8:127905594,chr8:127907113,chr8:127907135,chr8:127907198,chr8:127907209,chr8:127907209,chr8:127907218,chr8:127907218,chr8:127807864,chr8:127807864,chr8:127807864,chr8:127808034,chr8:127808085,chr8:127808134,chr8:127808192,chr8:127808192,chr8:127808213,chr8:127807474,chr8:127807474,chr8:127808296,chr8:127808309,chr8:127808317,chr8:127808317,chr8:127808755,chr8:127808813,chr8:127808813,chr8:127808821,chr8:127808844,chr8:127808862,chr8:127807518,chr8:127807522,chr8:127807602,chr8:127912940,chr8:127913022,chr8:127913068,chr8:127913080,chr8:127913142,chr8:127913149,chr8:127913141,chr8:127912703,chr8:127912703,chr8:127912761,chr8:127912761,chr8:127912795,chr8:127912795,chr8:127912895,chr8:127912895,chr8:127912882,chr8:127912892,chr8:127912892,chr8:127912946,chr8:127912946,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127841461,chr8:127887714,chr8:127880879,chr8:127888220,chr8:127841333,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127827096,chr8:127880709,chr8:127888054,chr8:127841826,chr8:127858346,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127912910,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127829153,chr8:127887680,chr8:127829224,chr8:127869244,chr8:127887637,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127838048,chr8:127841429,chr8:127858297,chr8:127839641,chr8:127837910,chr8:127842268,chr8:127857032,chr8:127838063,chr8:127858140,chr8:127808779,chr8:127837990,chr8:127808140,chr8:127893369,chr8:127842526,chr8:127802339,chr8:127809317,chr8:127856418,chr8:127858393,chr8:127808100,chr8:127838021,chr8:127841849,chr8:127850926,chr8:127858326,chr8:127807457,chr8:127841837,chr8:127856453,chr8:127859054,chr8:127807445,chr8:127841849,chr8:127904877,chr8:127856491,chr8:127858287,chr8:127838525,chr8:127850839,chr8:127857046,chr8:127808261,chr8:127858999,chr8:127808239,chr8:127838522,chr8:127841945,chr8:127850836,chr8:127802134,chr8:127857043,chr8:127859027,chr8:127808267,chr8:127856359,chr8:127883633,chr8:127808229,chr8:127808278,chr8:127838163,chr8:127841990,chr8:127858162,chr8:127841927,chr8:127802121,chr8:127856547,chr8:127808254,chr8:127838533,chr8:127808251,chr8:127838156,chr8:127858197,chr8:127838548,chr8:127802128,chr8:127808260,chr8:127808276,chr8:127802115,chr8:127841416,chr8:127856484,chr8:127859081,chr8:127895230,chr8:127856370,chr8:127807784,chr8:127859081,chr8:127895227,chr8:127808277,chr8:127858915,chr8:127802338,chr8:127809316,chr8:127838537,chr8:127841944,chr8:127808266,chr8:127841473,chr8:127838552,chr8:127841497,chr8:127802138,chr8:127839357,chr8:127808277,chr8:127802135,chr8:127856562,chr8:127808274,chr8:127838134,chr8:127802135,chr8:127808283,chr8:127895304,chr8:127838607,chr8:127802122,chr8:127838037,chr8:127850923,chr8:127858323,chr8:127858946,chr8:127895387,chr8:127807886,chr8:127895379,chr8:127850941,chr8:127858272,chr8:127838043,chr8:127856490,chr8:127807479,chr8:127895387,chr8:127807990,chr8:127893421,chr8:127809340,chr8:127807481,chr8:127895380,chr8:127857118,chr8:127808251,chr8:127842010,chr8:127850796,chr8:127802201,chr8:127856627,chr8:127808334,chr8:127838503,chr8:127850817,chr8:127895269,chr8:127807873,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127804468,chr8:127804599,chr8:127804001,chr8:127804638,chr8:127803985,chr8:127907235,chr8:127903841,chr8:127903939,chr8:127807822,chr8:127868689,chr8:127869415,chr8:127808328,chr8:128154805,chr8:127869270,chr8:127857143,chr8:127869255,chr8:127807892,chr8:128154648,chr8:127842525,chr8:127869275,chr8:127869291,chr8:127856481,chr8:127869270,chr8:127807906,chr8:127847216,chr8:127802135,chr8:127868611,chr8:127907184,chr8:127847209,chr8:127856510,chr8:127880458,chr8:127844019,chr8:127856390,chr8:127880327,chr8:127844124,chr8:127857565,chr8:127880431,chr8:127880352,chr8:127844125,chr8:127880432,chr8:127844168,chr8:127843721,chr8:127880875,chr8:127844187,chr8:127843733,chr8:127856628,chr8:127880887,chr8:127843735,chr8:127856627,chr8:127844315,chr8:127856297,chr8:127838598,chr8:127825061,chr8:127888040,chr8:127888098,chr8:127887726,chr8:127888098,chr8:127887960,chr8:127823945,chr8:127888235,chr8:127838036,chr8:127863374,chr8:127872000,chr8:127812960,chr8:127839279,chr8:127838022,chr8:127872010,chr8:127863329,chr8:127838532,chr8:127863341,chr8:127863343,chr8:127838562,chr8:127863320,chr8:127838021,chr8:127872014,chr8:127838036,chr8:127863250,chr8:127864691,chr8:127872015,chr8:127864715,chr8:127838153,chr8:127864785,chr8:127872236,chr8:127864665,chr8:127804777,chr8:127804781,chr8:127879524,chr8:127807808,chr8:127815196,chr8:127861419,chr8:127808277,chr8:127912783,chr8:127912783,chr8:127808153,chr8:127815126,chr8:127808764,chr8:127913145,chr8:127815156,chr8:127822471,chr8:127912840,chr8:127879384,chr8:127879380,chr8:127913045,chr8:127815184,chr8:127822400,chr8:127804776,chr8:127808265,chr8:127912915,chr8:127879457,chr8:127808150,chr8:127814860,chr8:127815211,chr8:127861399,chr8:127812326,chr8:127813153,chr8:127813194,chr8:127813194,chr8:127812472,chr8:127812472,chr8:127815185,chr8:127829087,chr8:127824886,chr8:127829057,chr8:127824883,chr8:127856628,chr8:127813896,chr8:127813961,chr8:127813833 chr8:125724645,chr8:125724659,chr8:125724681,chr8:125724706,chr8:125724706,chr8:125724706,chr8:125724850,chr8:125724850,chr8:125724850,chr8:125724862,chr8:125724862,chr8:125724862,chr8:125724868,chr8:125724868,chr8:125724868,chr8:125724936,chr8:125724342,chr8:125699345,chr8:125699354,chr8:125699287,chr8:125699286,chr8:125699355,chr8:125690811,chr8:125652773,chr8:125690527,chr8:125668217,chr8:125652896,chr8:125668188,chr8:125652729,chr8:125719387,chr8:125679631,chr8:125689415,chr8:125693729,chr8:125693700,chr8:125666569,chr8:125689458,chr8:125689416,chr8:125664048,chr8:125689419,chr8:125663895,chr8:125689389,chr8:125693592,chr8:125689390,chr8:125689428,chr8:125692433,chr8:125689368,chr8:125692487,chr8:125692382,chr8:125664043,chr8:125664036,chr8:125689430,chr8:125693623,chr8:125693681,chr8:125692432,chr8:125662633,chr8:125663448,chr8:125667205,chr8:125663888,chr8:125666578,chr8:125681029,chr8:125724911,chr8:125724908,chr8:125685808,chr8:125724796,chr8:125724883,chr8:125724661,chr8:125718735,chr8:125683054,chr8:125683082,chr8:125663896,chr8:125663438,chr8:125663887,chr8:125664054,chr8:125667224,chr8:125681093,chr8:125685655,chr8:125681254,chr8:125685536,chr8:125667227,chr8:125685522,chr8:125667116,chr8:125681190,chr8:125685638,chr8:125719376,chr8:125663530,chr8:125664059,chr8:125681197,chr8:125665327,chr8:125685580,chr8:125663879,chr8:125681172,chr8:125685656,chr8:125681170,chr8:125665272,chr8:125665271,chr8:125651092,chr8:125662864,chr8:125667118,chr8:125663911,chr8:125667257,chr8:125667060,chr8:125663451,chr8:125664021,chr8:125663443,chr8:125665327,chr8:125665351,chr8:125667068,chr8:125724796,chr8:125693696,chr8:125693740,chr8:125724877,chr8:125724803,chr8:125692458,chr8:125692322,chr8:125682992,chr8:125684512,chr8:125664042,chr8:125684466,chr8:125662830,chr8:125683129,chr8:125683081,chr8:125663436,chr8:125683081,chr8:125683097,chr8:125683082,chr8:125683081,chr8:125662904,chr8:125683163,chr8:125664022,chr8:125665001,chr8:125681172,chr8:125684467,chr8:125683050,chr8:125681214,chr8:125681157,chr8:125681175,chr8:125652816,chr8:125652799,chr8:125652764,chr8:125652764,chr8:125724895,chr8:125724879,chr8:125693625,chr8:125724714,chr8:125724795,chr8:125724711,chr8:125724560,chr8:125692504,chr8:125693861,chr8:125713632,chr8:125693325,chr8:125699276,chr8:125685253,chr8:125685740,chr8:125648182,chr8:125648182,chr8:125724670,chr8:125652953,chr8:125685571,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125724721,chr8:125652850,chr8:125724876,chr8:125652743,chr8:125724818,chr8:125685721,chr8:125685308,chr8:125685553,chr8:125685655,chr8:125724796,chr8:125652817,chr8:125685697,chr8:125663002,chr8:125684470,chr8:125684497,chr8:125697802,chr8:125670403,chr8:125699278,chr8:125670350,chr8:125689397,chr8:125690724,chr8:125689452,chr8:125690767,chr8:125690786,chr8:125652819,chr8:125652727,chr8:125652816,chr8:125689389,chr8:125652896,chr8:125690805,chr8:125689336,chr8:125683050,chr8:125662853,chr8:125651076,chr8:125664036,chr8:125662878,chr8:125716756,chr8:125664615,chr8:125683055,chr8:125685554,chr8:125652872,chr8:125683073,chr8:125652745,chr8:125652727,chr8:125670403,chr8:125670403,chr8:125683148,chr8:125665387,chr8:125681179,chr8:125699286,chr8:125663466,chr8:125699419,chr8:125681172,chr8:125681197,chr8:125699284,chr8:125665452,chr8:125666577,chr8:125681030,chr8:125699418,chr8:125664057,chr8:125662866,chr8:125699400,chr8:125663887,chr8:125662881,chr8:125699400,chr8:125662888,chr8:125662896,chr8:125699354,chr8:125663443,chr8:125666568,chr8:125666581,chr8:125724884,chr8:125724804,chr8:125724813,chr8:125652956,chr8:125724802,chr8:125724798,chr8:125724795,chr8:125724670,chr8:125652955,chr8:125652913,chr8:125699246,chr8:125724691,chr8:125699245,chr8:125724826,chr8:125699403,chr8:125724816,chr8:125724823,chr8:125699400,chr8:125724837,chr8:125699414,chr8:125648178,chr8:125648179,chr8:125648191,chr8:125651062,chr8:125651062,chr8:125651102,chr8:125651102,chr8:125651145,chr8:125651145,chr8:125651250,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651283,chr8:125651285,chr8:125651285,chr8:125651287,chr8:125652537,chr8:125652537,chr8:125652581,chr8:125652582,chr8:125652806,chr8:125652835,chr8:125652835,chr8:125652842,chr8:125652842,chr8:125652854,chr8:125652861,chr8:125652861,chr8:125652866,chr8:125652866,chr8:125652866,chr8:125652878,chr8:125652928,chr8:125656875,chr8:125666631,chr8:125666631,chr8:125666631,chr8:125666676,chr8:125666744,chr8:125666744,chr8:125666829,chr8:125667059,chr8:125667059,chr8:125667059,chr8:125667081,chr8:125667081,chr8:125667081,chr8:125667085,chr8:125667085,chr8:125667085,chr8:125667094,chr8:125667110,chr8:125667110,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667119,chr8:125667129,chr8:125667144,chr8:125667205,chr8:125667205,chr8:125667241,chr8:125667241,chr8:125667241,chr8:125667241,chr8:125667247,chr8:125667247,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8:125667274,chr8: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NA NA 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126679518,chr8:126679520,chr8:126679520,chr8:126679520,chr8:126679547,chr8:126675043,chr8:126675043,chr8:126675043,chr8:126675110,chr8:126675110,chr8:126675110,chr8:126675110,chr8:126675118,chr8:126675118,chr8:126675133,chr8:126675133,chr8:126675181,chr8:126675181,chr8:126675181,chr8:126675194,chr8:126675200,chr8:126675229,chr8:126675229,chr8:126675251,chr8:126675251,chr8:126675352,chr8:126675352,chr8:126675641,chr8:126675641,chr8:126675707,chr8:126675728,chr8:126675778,chr8:126675778,chr8:126675902,chr8:126675902,chr8:126675902,chr8:126676104,chr8:126676121,chr8:126676121,chr8:126676121,chr8:126676208,chr8:126676208,chr8:126676226,chr8:126676226,chr8:126676226,chr8:126676237,chr8:126676237,chr8:126676237,chr8:126676237,chr8:126676238,chr8:126676249,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676283,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677598,chr8:126677598,chr8:126677598,chr8:126677598,chr8:126677607,chr8:126677669,chr8:126677669,chr8:126677681,chr8:126677681,chr8:126677700,chr8:126677722,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126678574,chr8:126678576,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682443,chr8:126682455,chr8:126682522,chr8:126682522,chr8:126684172,chr8:126684318,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693384,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693403,chr8:126693420,chr8:126693482,chr8:126693482,chr8:126693482,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695372,chr8:126697771,chr8:126697771,chr8:126697807,chr8:126697807,chr8:126697807,chr8:126697847,chr8:126697847,chr8:126697847,chr8:126697848,chr8:126697913,chr8:126697913,chr8:126697955,chr8:126697958,chr8:126697958,chr8:126697983,chr8:126698086,chr8:126698086,chr8:126698086,chr8:126698094,chr8:126698094,chr8:126698135,chr8:126698302,chr8:126701616,chr8:126703004,chr8:126703004,chr8:126703057,chr8:126703087,chr8:126702724,chr8:126702724,chr8:126702728,chr8:126702728,chr8:126704679,chr8:126704679,chr8:126704679,chr8:126704706,chr8:126705325,chr8:126705913,chr8:126705913,chr8:126705987,chr8:126705999,chr8:126705999,chr8:126706019,chr8:126704497,chr8:126704497,chr8:126706217,chr8:126706217,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126704514,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704656,chr8:126709983,chr8:126709987,chr8:126711464,chr8:126711464,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711514,chr8:126711518,chr8:126711528,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711612,chr8:126711628,chr8:126711642,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126712210,chr8:126712210,chr8:126710803,chr8:126710976,chr8:126710976,chr8:126676283,chr8:126678926,chr8:126678697,chr8:126678690,chr8:126679381,chr8:126705859,chr8:126731590,chr8:126731590,chr8:126731648,chr8:126731648,chr8:126731648,chr8:126731744,chr8:126682523,chr8:126682647,chr8:126681757 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 3 299 50295 1348 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(81),mismappers(1),mismatches(29) GAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CGCAGTGAGATTGGAGAGCATCCTCCGATGCACTGTACATTTGGGAGGAAGAGAAAGGATAAGAGCCCTGCTGATTCAGTGGTGGTCATTATCATTGTCAATGGAGCTGTCACTGTTATCGTCATTTTCGTTTGCGGTGAG___AGATCATC...___GATTGCTGCCATGACTCAAAATGGGACCATGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25540 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125725748:+ chr8:126660571-127021174:+ chr8:126737992:+ chr8:127822452,chr8:127824457,chr8:127824906,chr8:127825086,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127829036,chr8:127832772,chr8:127838479,chr8:127838475,chr8:127838537,chr8:127838713,chr8:127838713,chr8:127837932,chr8:127839300,chr8:127839300,chr8:127839328,chr8:127839317,chr8:127839317,chr8:127837957,chr8:127839453,chr8:127839453,chr8:127839490,chr8:127839490,chr8:127839574,chr8:127838003,chr8:127837988,chr8:127837988,chr8:127837988,chr8:127838008,chr8:127838189,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127842536,chr8:127844128,chr8:127843728,chr8:127843728,chr8:127843744,chr8:127843693,chr8:127844015,chr8:127845246,chr8:127847134,chr8:127847233,chr8:127850757,chr8:127850787,chr8:127850811,chr8:127850886,chr8:127802338,chr8:127802359,chr8:127802415,chr8:127802415,chr8:127802445,chr8:127802445,chr8:127802104,chr8:127802576,chr8:127802083,chr8:127802120,chr8:127802105,chr8:127802102,chr8:127802094,chr8:127802180,chr8:127802158,chr8:127802276,chr8:127857018,chr8:127857066,chr8:127857060,chr8:127857168,chr8:127856357,chr8:127857147,chr8:127856372,chr8:127857452,chr8:127857564,chr8:127857564,chr8:127857564,chr8:127857543,chr8:127857571,chr8:127857571,chr8:127857674,chr8:127857674,chr8:127857694,chr8:127856452,chr8:127856452,chr8:127856435,chr8:127858451,chr8:127858451,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858295,chr8:127858328,chr8:127858782,chr8:127858850,chr8:127858945,chr8:127859008,chr8:127859024,chr8:127859024,chr8:127859109,chr8:127863269,chr8:127863269,chr8:127863323,chr8:127863350,chr8:127863389,chr8:127864661,chr8:127864733,chr8:127867726,chr8:127867726,chr8:127868513,chr8:127803997,chr8:127803951,chr8:127803978,chr8:127804000,chr8:127869231,chr8:127869248,chr8:127869256,chr8:127869289,chr8:127869310,chr8:127869323,chr8:127869438,chr8:127871790,chr8:127871921,chr8:127871990,chr8:127872189,chr8:127872229,chr8:127872373,chr8:127872373,chr8:127872373,chr8:127872419,chr8:127873598,chr8:127877116,chr8:127879300,chr8:127880584,chr8:127880581,chr8:127880597,chr8:127880680,chr8:127880673,chr8:127880673,chr8:127880673,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880739,chr8:127880746,chr8:127880898,chr8:127880898,chr8:127881121,chr8:127881121,chr8:127881242,chr8:127880348,chr8:127880378,chr8:127880452,chr8:127880452,chr8:127880452,chr8:127883886,chr8:127885220,chr8:127886001,chr8:127888012,chr8:127888012,chr8:127888061,chr8:127888061,chr8:127888110,chr8:127888241,chr8:127888321,chr8:127887649,chr8:127888628,chr8:127887600,chr8:127887820,chr8:127887933,chr8:127807864,chr8:127807864,chr8:127807864,chr8:127808034,chr8:127808085,chr8:127808134,chr8:127808192,chr8:127808192,chr8:127808213,chr8:127807474,chr8:127807474,chr8:127808296,chr8:127808309,chr8:127808317,chr8:127808317,chr8:127808755,chr8:127808813,chr8:127808813,chr8:127808821,chr8:127808844,chr8:127808862,chr8:127807518,chr8:127807522,chr8:127807602,chr8:127891494,chr8:127892160,chr8:127892235,chr8:127893429,chr8:127893451,chr8:127892148,chr8:127895803,chr8:127896401,chr8:127905594,chr8:127907113,chr8:127907135,chr8:127907198,chr8:127907209,chr8:127907209,chr8:127907218,chr8:127907218,chr8:127912940,chr8:127913022,chr8:127913068,chr8:127913080,chr8:127913142,chr8:127913149,chr8:127913141,chr8:127912703,chr8:127912703,chr8:127912761,chr8:127912761,chr8:127912795,chr8:127912795,chr8:127912895,chr8:127912895,chr8:127912882,chr8:127912892,chr8:127912892,chr8:127912946,chr8:127912946,chr8:127880679,chr8:127880679,chr8:127880679,chr8:127841461,chr8:127887714,chr8:127880879,chr8:127888220,chr8:127841333,chr8:127893338,chr8:127880709,chr8:127893371,chr8:127827096,chr8:127880709,chr8:127888054,chr8:127841826,chr8:127858346,chr8:127858343,chr8:127880525,chr8:127888158,chr8:127880352,chr8:127829274,chr8:127869343,chr8:127869356,chr8:127912910,chr8:127860622,chr8:127869337,chr8:127860622,chr8:127829153,chr8:127887680,chr8:127829224,chr8:127869244,chr8:127887637,chr8:127880434,chr8:127880350,chr8:127823946,chr8:127838048,chr8:127841429,chr8:127858297,chr8:127839641,chr8:127837910,chr8:127842268,chr8:127857032,chr8:127838063,chr8:127858140,chr8:127808779,chr8:127837990,chr8:127808140,chr8:127893369,chr8:127802339,chr8:127842526,chr8:127809317,chr8:127856418,chr8:127858393,chr8:127808100,chr8:127838021,chr8:127841849,chr8:127850926,chr8:127858326,chr8:127807457,chr8:127841837,chr8:127856453,chr8:127859054,chr8:127807445,chr8:127841849,chr8:127904877,chr8:127856491,chr8:127858287,chr8:127838525,chr8:127850839,chr8:127857046,chr8:127808261,chr8:127858999,chr8:127808239,chr8:127838522,chr8:127802134,chr8:127841945,chr8:127850836,chr8:127857043,chr8:127859027,chr8:127808267,chr8:127856359,chr8:127808229,chr8:127883633,chr8:127808278,chr8:127838163,chr8:127841990,chr8:127858162,chr8:127802121,chr8:127841927,chr8:127856547,chr8:127808254,chr8:127838533,chr8:127808251,chr8:127838156,chr8:127858197,chr8:127838548,chr8:127802128,chr8:127808260,chr8:127808276,chr8:127802115,chr8:127841416,chr8:127856484,chr8:127859081,chr8:127895230,chr8:127856370,chr8:127807784,chr8:127859081,chr8:127895227,chr8:127808277,chr8:127858915,chr8:127802338,chr8:127809316,chr8:127838537,chr8:127841944,chr8:127808266,chr8:127841473,chr8:127838552,chr8:127802138,chr8:127841497,chr8:127839357,chr8:127808277,chr8:127802135,chr8:127856562,chr8:127808274,chr8:127838134,chr8:127802135,chr8:127808283,chr8:127895304,chr8:127838607,chr8:127802122,chr8:127838037,chr8:127850923,chr8:127858323,chr8:127858946,chr8:127895387,chr8:127807886,chr8:127895379,chr8:127850941,chr8:127858272,chr8:127838043,chr8:127856490,chr8:127807479,chr8:127895387,chr8:127807990,chr8:127809340,chr8:127893421,chr8:127807481,chr8:127895380,chr8:127857118,chr8:127808251,chr8:127802201,chr8:127842010,chr8:127850796,chr8:127856627,chr8:127808334,chr8:127838503,chr8:127850817,chr8:127895269,chr8:127807873,chr8:127829268,chr8:127829226,chr8:127829268,chr8:127804468,chr8:127804599,chr8:127804001,chr8:127804638,chr8:127803985,chr8:127907235,chr8:127903841,chr8:127903939,chr8:127807822,chr8:127868689,chr8:127808328,chr8:127869415,chr8:128154805,chr8:127869270,chr8:127857143,chr8:127807892,chr8:127869255,chr8:128154648,chr8:127842525,chr8:127869275,chr8:127869291,chr8:127856481,chr8:127807906,chr8:127869270,chr8:127802135,chr8:127847216,chr8:127868611,chr8:127907184,chr8:127847209,chr8:127856510,chr8:127880458,chr8:127844019,chr8:127856390,chr8:127880327,chr8:127844124,chr8:127857565,chr8:127880431,chr8:127880352,chr8:127844125,chr8:127880432,chr8:127844168,chr8:127843721,chr8:127880875,chr8:127844187,chr8:127843733,chr8:127856628,chr8:127880887,chr8:127843735,chr8:127856627,chr8:127844315,chr8:127856297,chr8:127812326,chr8:127813153,chr8:127813194,chr8:127813194,chr8:127812472,chr8:127812472,chr8:127838598,chr8:127825061,chr8:127888040,chr8:127888098,chr8:127887726,chr8:127888098,chr8:127887960,chr8:127823945,chr8:127888235,chr8:127838036,chr8:127863374,chr8:127872000,chr8:127812960,chr8:127839279,chr8:127838022,chr8:127872010,chr8:127863329,chr8:127838532,chr8:127863341,chr8:127863343,chr8:127838562,chr8:127863320,chr8:127838021,chr8:127872014,chr8:127838036,chr8:127863250,chr8:127864691,chr8:127872015,chr8:127864715,chr8:127838153,chr8:127864785,chr8:127872236,chr8:127864665,chr8:127804777,chr8:127804781,chr8:127807808,chr8:127879524,chr8:127861419,chr8:127808277,chr8:127815196,chr8:127912783,chr8:127912783,chr8:127808153,chr8:127808764,chr8:127913145,chr8:127815126,chr8:127815156,chr8:127822471,chr8:127912840,chr8:127879384,chr8:127879380,chr8:127913045,chr8:127822400,chr8:127804776,chr8:127808265,chr8:127912915,chr8:127815184,chr8:127808150,chr8:127879457,chr8:127814860,chr8:127861399,chr8:127815211,chr8:127813896,chr8:127813961,chr8:127813833,chr8:127829087,chr8:127815185,chr8:127824886,chr8:127829057,chr8:127824883,chr8:127856628,chr8:127913029,chr8:127872360,chr8:127880656,chr8:127844170,chr8:127872267,chr8:127880482,chr8:127844208,chr8:127863331,chr8:127912920,chr8:127863338,chr8:127880827,chr8:127912924,chr8:127872226,chr8:127880836,chr8:127913091,chr8:127880894,chr8:127871682,chr8:127815978,chr8:127815962,chr8:127815071,chr8:127815133 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NA NA 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126675229,chr8:126675229,chr8:126675251,chr8:126675251,chr8:126675352,chr8:126675352,chr8:126675641,chr8:126675641,chr8:126675707,chr8:126675728,chr8:126675778,chr8:126675778,chr8:126675902,chr8:126675902,chr8:126675902,chr8:126676104,chr8:126676121,chr8:126676121,chr8:126676121,chr8:126676208,chr8:126676208,chr8:126676226,chr8:126676226,chr8:126676226,chr8:126676237,chr8:126676237,chr8:126676237,chr8:126676237,chr8:126676238,chr8:126676249,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676256,chr8:126676283,chr8:126676340,chr8:126676662,chr8:126677514,chr8:126677598,chr8:126677598,chr8:126677598,chr8:126677598,chr8:126677607,chr8:126677669,chr8:126677669,chr8:126677681,chr8:126677681,chr8:126677700,chr8:126677722,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126678574,chr8:126678576,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682443,chr8:126682455,chr8:126682522,chr8:126682522,chr8:126684172,chr8:126684318,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693384,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693403,chr8:126693420,chr8:126693482,chr8:126693482,chr8:126693482,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695372,chr8:126697771,chr8:126697771,chr8:126697807,chr8:126697807,chr8:126697807,chr8:126697847,chr8:126697847,chr8:126697847,chr8:126697848,chr8:126697913,chr8:126697913,chr8:126697955,chr8:126697958,chr8:126697958,chr8:126697983,chr8:126698086,chr8:126698086,chr8:126698086,chr8:126698094,chr8:126698094,chr8:126698135,chr8:126698302,chr8:126676283,chr8:126678926,chr8:126678697,chr8:126678690,chr8:126679381,chr8:126705859,chr8:126701616,chr8:126703004,chr8:126703004,chr8:126703057,chr8:126703087,chr8:126702724,chr8:126702724,chr8:126702728,chr8:126702728,chr8:126704679,chr8:126704679,chr8:126704679,chr8:126704706,chr8:126705325,chr8:126705913,chr8:126705913,chr8:126705987,chr8:126705999,chr8:126705999,chr8:126706019,chr8:126704497,chr8:126704497,chr8:126706217,chr8:126706217,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126704514,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704656,chr8:126709983,chr8:126709987,chr8:126711464,chr8:126711464,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711514,chr8:126711518,chr8:126711528,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711612,chr8:126711628,chr8:126711642,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126712210,chr8:126712210,chr8:126710803,chr8:126710976,chr8:126710976,chr8:126682523,chr8:126682647,chr8:126681757,chr8:126731590,chr8:126731590,chr8:126731648,chr8:126731648,chr8:126731648,chr8:126731744,chr8:126736889,chr8:126736903,chr8:126736925,chr8:126736950,chr8:126736950,chr8:126736950,chr8:126737094,chr8:126737094,chr8:126737094,chr8:126737106,chr8:126737106,chr8:126737106,chr8:126737112,chr8:126737112,chr8:126737112,chr8:126737180,chr8:126736586,chr8:126711589,chr8:126711598,chr8:126711531,chr8:126711530 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 299 3428 1348 ENST00000662410.1 ENST00000651999.1 downstream upstream duplicates(74),mismappers(1),mismatches(29) CGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTgCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|CGCAGTGAGATTGGAGAGCATCCTCCGATGCACTGTACATTTGGGAGGAAGAGAAAGGATAAGAGCCCTGCTGATTCAGTGGTGGTCATTATCATTGTCAATGGAGCTGTCACTGTTATCGTCATTTTCGTTTGCGGTGAG___AGATCATC...___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25541 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855318:+ chr8:128806772-129199347:+ chr8:128867564:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125650233:+ chr8:126660571-127021174:+ chr8:126662477:+ chr8:127880680,chr8:127880674,chr8:127880682,chr8:127880680,chr8:127880680,chr8:127880597,chr8:127880679,chr8:127880679,chr8:127880679 chr8:125648182,chr8:125648183,chr8:125648186,chr8:125648184,chr8:125648187,chr8:125648182,chr8:125648178,chr8:125648179,chr8:125648191 NA NA chr8:128892926,chr8:128892920,chr8:128892928,chr8:128892926,chr8:128892926,chr8:128892843,chr8:128892925,chr8:128892925,chr8:128892925 chr8:126660426,chr8:126660427,chr8:126660430,chr8:126660428,chr8:126660431,chr8:126660426,chr8:126660422,chr8:126660423,chr8:126660435 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 1 300 1958 3220 ENST00000661830.1 ENST00000651999.1 downstream upstream duplicates(56),mismatches(69) GTCAGCAAGGAGCAACTTCCCAAATATACATCTAAAAAGATGACAAACTCATGTGGAATGTGGATTTAAGGAGGAAG___GACCATAGCTGTCTGCAGTGCAGG...CTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCGGTGAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAG|CATTCACCCTCACAGGTTCTGGAACAAGCTCCAAGGCAGAG___GGATGATGGCCTGGCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25542 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ chr8:127912703,chr8:127912703,chr8:127912761,chr8:127912761,chr8:127912761,chr8:127912795,chr8:127912795,chr8:127912895,chr8:127912895,chr8:127912895,chr8:127912882,chr8:127912892,chr8:127912892,chr8:127912946,chr8:127912946,chr8:127912940,chr8:127913022,chr8:127913068,chr8:127913080,chr8:127913080,chr8:127913142,chr8:127913142,chr8:127913149,chr8:127913149,chr8:127913141,chr8:127913141,chr8:127913357,chr8:127893338,chr8:127893371,chr8:127891494,chr8:127892148,chr8:127892165,chr8:127892150,chr8:127892160,chr8:127892160,chr8:127892235,chr8:127893342,chr8:127893342,chr8:127893429,chr8:127893429,chr8:127893451,chr8:127893451,chr8:127893451,chr8:127893554,chr8:127893554,chr8:127893651,chr8:127893792,chr8:127908524,chr8:127908626,chr8:127907019,chr8:127903841,chr8:127903939,chr8:128154805,chr8:128154648,chr8:127893370,chr8:127913145,chr8:127912840,chr8:127913045,chr8:127912915,chr8:127912783,chr8:127912783,chr8:127912915,chr8:127891451,chr8:127913029,chr8:127912920,chr8:127912924,chr8:127913091,chr8:127893445,chr8:127903501,chr8:127903170,chr8:127907134,chr8:127908899,chr8:127898226,chr8:127897508,chr8:127912921,chr8:127895421,chr8:127906973,chr8:127903013,chr8:127907113,chr8:127907198,chr8:127907209 chr8:125724670,chr8:125907977,chr8:125652913,chr8:125699246,chr8:125907929,chr8:125699245,chr8:125724691,chr8:125699403,chr8:125715724,chr8:125724826,chr8:125724816,chr8:125699400,chr8:125724823,chr8:125699414,chr8:125724837,chr8:125724884,chr8:125724804,chr8:125724813,chr8:125715734,chr8:125907978,chr8:125724802,chr8:125907839,chr8:125724798,chr8:125907827,chr8:125724795,chr8:125907827,chr8:125907828,chr8:125651145,chr8:125651283,chr8:125684521,chr8:125716756,chr8:125809773,chr8:125662833,chr8:125662853,chr8:125751646,chr8:125651076,chr8:125684432,chr8:125751531,chr8:125684484,chr8:125751584,chr8:125662878,chr8:125684554,chr8:125751654,chr8:125827218,chr8:125923574,chr8:125751476,chr8:125722070,chr8:125665456,chr8:125665800,chr8:125670128,chr8:125671928,chr8:125672074,chr8:125681062,chr8:125681151,chr8:125684160,chr8:125699296,chr8:125699322,chr8:125699398,chr8:125699420,chr8:125699270,chr8:125699274,chr8:125715741,chr8:125722014,chr8:125724645,chr8:125724850,chr8:125724862,chr8:125724868,chr8:125751463,chr8:125757126,chr8:125756883,chr8:125798732,chr8:125802459,chr8:125802454,chr8:125802452,chr8:125821780,chr8:125842812,chr8:125897062,chr8:125756732,chr8:125652872,chr8:125652745,chr8:125652727 NA NA chr8:128924949,chr8:128924949,chr8:128925007,chr8:128925007,chr8:128925007,chr8:128925041,chr8:128925041,chr8:128925141,chr8:128925141,chr8:128925141,chr8:128925128,chr8:128925138,chr8:128925138,chr8:128925192,chr8:128925192,chr8:128925186,chr8:128925268,chr8:128925314,chr8:128925326,chr8:128925326,chr8:128925388,chr8:128925388,chr8:128925395,chr8:128925395,chr8:128925387,chr8:128925387,chr8:128925603,chr8:128905584,chr8:128905617,chr8:128903740,chr8:128904394,chr8:128904411,chr8:128904396,chr8:128904406,chr8:128904406,chr8:128904481,chr8:128905588,chr8:128905588,chr8:128905675,chr8:128905675,chr8:128905697,chr8:128905697,chr8:128905697,chr8:128905800,chr8:128905800,chr8:128905897,chr8:128906038,chr8:128920770,chr8:128920872,chr8:128919265,chr8:128916087,chr8:128916185,chr8:129167051,chr8:129166894,chr8:128905616,chr8:128925391,chr8:128925086,chr8:128925291,chr8:128925161,chr8:128925029,chr8:128925029,chr8:128925161,chr8:128903697,chr8:128925275,chr8:128925166,chr8:128925170,chr8:128925337,chr8:128905691,chr8:128915747,chr8:128915416,chr8:128919380,chr8:128921145,chr8:128910472,chr8:128909754,chr8:128925167,chr8:128907667,chr8:128919219,chr8:128915259,chr8:128919359,chr8:128919444,chr8:128919455 chr8:126736914,chr8:126920221,chr8:126665157,chr8:126711490,chr8:126920173,chr8:126711489,chr8:126736935,chr8:126711647,chr8:126727968,chr8:126737070,chr8:126737060,chr8:126711644,chr8:126737067,chr8:126711658,chr8:126737081,chr8:126737128,chr8:126737048,chr8:126737057,chr8:126727978,chr8:126920222,chr8:126737046,chr8:126920083,chr8:126737042,chr8:126920071,chr8:126737039,chr8:126920071,chr8:126920072,chr8:126663389,chr8:126663527,chr8:126696765,chr8:126729000,chr8:126822017,chr8:126675077,chr8:126675097,chr8:126763890,chr8:126663320,chr8:126696676,chr8:126763775,chr8:126696728,chr8:126763828,chr8:126675122,chr8:126696798,chr8:126763898,chr8:126839462,chr8:126935818,chr8:126763720,chr8:126734314,chr8:126677700,chr8:126678044,chr8:126682372,chr8:126684172,chr8:126684318,chr8:126693306,chr8:126693395,chr8:126696404,chr8:126711540,chr8:126711566,chr8:126711642,chr8:126711664,chr8:126711514,chr8:126711518,chr8:126727985,chr8:126734258,chr8:126736889,chr8:126737094,chr8:126737106,chr8:126737112,chr8:126763707,chr8:126769370,chr8:126769127,chr8:126810976,chr8:126814703,chr8:126814698,chr8:126814696,chr8:126834024,chr8:126855056,chr8:126909306,chr8:126768976,chr8:126665116,chr8:126664989,chr8:126664971 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 0 2 298 11923 6693 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(82),mismappers(2),mismatches(19) GGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG___GCTAAGGTGTTCTATCTTCAGCAAAAAGGAACAATCTTAGAGTCTGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25543 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125886838:+ chr8:126660571-127021174:+ chr8:126899082:+ chr8:127913029,chr8:127864627,chr8:127872360,chr8:127862420,chr8:127880656,chr8:127862422,chr8:127843210,chr8:127869315,chr8:127872267,chr8:127879383,chr8:127863331,chr8:127912920,chr8:127863338,chr8:127880827,chr8:127912924,chr8:127843150,chr8:127869367,chr8:127872226,chr8:127880836,chr8:127913091,chr8:127864845,chr8:127880894,chr8:127868577,chr8:127867583,chr8:127869276,chr8:127879454,chr8:127871682,chr8:127869245,chr8:127872167,chr8:127842455,chr8:127813096,chr8:127812326,chr8:127812326,chr8:127812323,chr8:127813153,chr8:127813120,chr8:127813194,chr8:127813194,chr8:127813845,chr8:127813879,chr8:127813879,chr8:127813879,chr8:127813833,chr8:127813877,chr8:127813904,chr8:127812472,chr8:127812472,chr8:127812472,chr8:127813896,chr8:127813961,chr8:127813986,chr8:127814062,chr8:127838256,chr8:127893445,chr8:127887965,chr8:127838055,chr8:127869294,chr8:127889292,chr8:127838049,chr8:127869281,chr8:127838055,chr8:127869295,chr8:127869265,chr8:127879445,chr8:127903501,chr8:127903170,chr8:127848606,chr8:127815262,chr8:127815922,chr8:127815978,chr8:127815962,chr8:127815962,chr8:127815071,chr8:127815133,chr8:127858402,chr8:127822532,chr8:127858393,chr8:127893360,chr8:127838544,chr8:127889367,chr8:127889312,chr8:127817753,chr8:127838564,chr8:127856559,chr8:127889348,chr8:127817648,chr8:127821577,chr8:127856993,chr8:127888232,chr8:127856377,chr8:127889154,chr8:127908369,chr8:127866163,chr8:127848543,chr8:127848475,chr8:127848572,chr8:127848569,chr8:127802038,chr8:127872015,chr8:127818979,chr8:127802040,chr8:127872002,chr8:127827112,chr8:127802032,chr8:127824891,chr8:127871870,chr8:127802041,chr8:127872349,chr8:127818987,chr8:127802041,chr8:127802039,chr8:127872346,chr8:127860477,chr8:127889333,chr8:127907134,chr8:127817461,chr8:127817513,chr8:127908899,chr8:127882764,chr8:127846346,chr8:127804973,chr8:127864686,chr8:127869269,chr8:127818887,chr8:127818936,chr8:127818965,chr8:127818969,chr8:127818992,chr8:127818992,chr8:127862444,chr8:127912921,chr8:127912786,chr8:127826140,chr8:127913126,chr8:127797030,chr8:127802061,chr8:127803857,chr8:127838693,chr8:127821529,chr8:127838534,chr8:127857062,chr8:127915055,chr8:127838597,chr8:127848575,chr8:127838547,chr8:127857070,chr8:127915037,chr8:127821719,chr8:127848590,chr8:127821723,chr8:127838598,chr8:127844850,chr8:127848594,chr8:127821727,chr8:127848630,chr8:127857173,chr8:127914784,chr8:127850827,chr8:127802139,chr8:127872222,chr8:127861416,chr8:127870039,chr8:127860682,chr8:127802335,chr8:127861374,chr8:127872606,chr8:127895421,chr8:127883094,chr8:127858402,chr8:127908461,chr8:127856993,chr8:127856634,chr8:127826146,chr8:127888519,chr8:127844216,chr8:127808869,chr8:127843208,chr8:127808883,chr8:127827290,chr8:127808773,chr8:127814064,chr8:127824887,chr8:127843726,chr8:127824887,chr8:127807855,chr8:127807556,chr8:127826059,chr8:127827766,chr8:127869696,chr8:127821560,chr8:127822452,chr8:127822452,chr8:127821705,chr8:127821705,chr8:127821693,chr8:127880830,chr8:127883087,chr8:127857043,chr8:127825068,chr8:127863220,chr8:127815187,chr8:127833674,chr8:127808268,chr8:127863204,chr8:127880664,chr8:127879356,chr8:127808252,chr8:127833691,chr8:127808856,chr8:127882594,chr8:127807889,chr8:127824082,chr8:127824082,chr8:127824081,chr8:127824082,chr8:127824457,chr8:127824457,chr8:127824906,chr8:127824906,chr8:127824927,chr8:127825086,chr8:127826004,chr8:127827013,chr8:127827013,chr8:127827030,chr8:127827168,chr8:127827168,chr8:127827222,chr8:127827222,chr8:127827222,chr8:127827215,chr8:127827498,chr8:127827498,chr8:127827498,chr8:127871344,chr8:127824819,chr8:127813864,chr8:127844065,chr8:127863195,chr8:127863305,chr8:127863306,chr8:127844181,chr8:127864735,chr8:127863307,chr8:127864753,chr8:127843729,chr8:127864723,chr8:127864695,chr8:127813962,chr8:127864729,chr8:127844179,chr8:127829214,chr8:127829243,chr8:127829243,chr8:127829036,chr8:127829036,chr8:127797311,chr8:127832638,chr8:127832703,chr8:127832772,chr8:127832763,chr8:127832833,chr8:127832813,chr8:127832900,chr8:127838479,chr8:127838475,chr8:127838475,chr8:127838468,chr8:127838537,chr8:127838537,chr8:127838520,chr8:127838713,chr8:127838713,chr8:127837932,chr8:127839300,chr8:127839300,chr8:127839300,chr8:127839300,chr8:127839328,chr8:127839328,chr8:127839317,chr8:127839317,chr8:127839317,chr8:127839317,chr8:127837957,chr8:127839453,chr8:127839453,chr8:127839453,chr8:127839453,chr8:127839453,chr8:127839481,chr8:127839481,chr8:127839490,chr8:127839490,chr8:127839574,chr8:127838003,chr8:127837988,chr8:127837988,chr8:127837988,chr8:127837988,chr8:127837988,chr8:127838008,chr8:127838008,chr8:127838008,chr8:127840147,chr8:127838189,chr8:127838189,chr8:127841730,chr8:127841908,chr8:127841373,chr8:127841529,chr8:127842536,chr8:127842536,chr8:127843421,chr8:127843110,chr8:127843465,chr8:127843439,chr8:127843543,chr8:127843510,chr8:127843537,chr8:127843537,chr8:127843562,chr8:127843615,chr8:127843615,chr8:127843142,chr8:127843142,chr8:127843197,chr8:127843197,chr8:127843728,chr8:127843728,chr8:127843744,chr8:127843943,chr8:127844015,chr8: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NA NA 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chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678044,chr8:126678574,chr8:126678574,chr8:126678574,chr8:126678574,chr8:126678576,chr8:126678576,chr8:126680350,chr8:126680486,chr8:126680517,chr8:126682236,chr8:126682372,chr8:126682443,chr8:126682455,chr8:126682455,chr8:126682488,chr8:126682522,chr8:126682522,chr8:126682522,chr8:126682640,chr8:126684172,chr8:126684318,chr8:126693306,chr8:126693306,chr8:126693306,chr8:126693384,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693395,chr8:126693403,chr8:126693420,chr8:126693480,chr8:126693482,chr8:126693482,chr8:126695156,chr8:126695188,chr8:126695201,chr8:126695217,chr8:126695229,chr8:126695229,chr8:126695351,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695355,chr8:126695366,chr8:126695372,chr8:126695372,chr8:126696404,chr8:126696404,chr8:126696404,chr8:126696605,chr8:126696696,chr8:126696708,chr8:126696847,chr8:126696858,chr8:126678821,chr8:126693274,chr8:126862550,chr8:126675687,chr8:126885301,chr8:126678812,chr8:126885328,chr8:126678825,chr8:126677631,chr8:126693423,chr8:126711530,chr8:126675710,chr8:126885335,chr8:126711663,chr8:126693416,chr8:126885416,chr8:126693441,chr8:126711528,chr8:126677696,chr8:126711662,chr8:126676301,chr8:126862499,chr8:126885344,chr8:126675110,chr8:126711644,chr8:126877026,chr8:126862487,chr8:126676131,chr8:126885345,chr8:126675125,chr8:126711644,chr8:126675132,chr8:126885380,chr8:126675140,chr8:126885380,chr8:126711598,chr8:126675108,chr8:126885384,chr8:126677686,chr8:126711599,chr8:126693429,chr8:126693444,chr8:126711475,chr8:126675389,chr8:126885205,chr8:126711434,chr8:126697771,chr8:126697771,chr8:126697807,chr8:126697807,chr8:126697824,chr8:126697825,chr8:126697847,chr8:126697847,chr8:126697848,chr8:126697913,chr8:126697955,chr8:126697958,chr8:126697958,chr8:126697983,chr8:126698086,chr8:126698086,chr8:126698086,chr8:126698094,chr8:126698094,chr8:126698135,chr8:126697176,chr8:126698302,chr8:126701616,chr8:126701649,chr8:126701654,chr8:126701724,chr8:126701727,chr8:126702949,chr8:126703004,chr8:126703057,chr8:126703087,chr8:126702724,chr8:126702724,chr8:126702724,chr8:126702728,chr8:126702772,chr8:126702888,chr8:126704679,chr8:126704679,chr8:126704679,chr8:126704706,chr8:126705325,chr8:126705669,chr8:126704471,chr8:126704471,chr8:126705903,chr8:126705913,chr8:126705913,chr8:126705987,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126706019,chr8:126706019,chr8:126706036,chr8:126704497,chr8:126704497,chr8:126704497,chr8:126706217,chr8:126706217,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126704514,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704656,chr8:126709983,chr8:126709987,chr8:126710002,chr8:126711464,chr8:126711464,chr8:126711464,chr8:126711478,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711518,chr8:126711518,chr8:126711518,chr8:126711528,chr8:126711528,chr8:126711528,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711584,chr8:126711612,chr8:126711642,chr8:126711642,chr8:126711645,chr8:126711664,chr8:126711664,chr8:126711664,chr8:126711671,chr8:126711700,chr8:126712210,chr8:126712210,chr8:126712210,chr8:126710803,chr8:126710976,chr8:126710976,chr8:126710976,chr8:126710976,chr8:126720940,chr8:126720295,chr8:126728748,chr8:126731590,chr8:126731590,chr8:126731648,chr8:126731648,chr8:126731744,chr8:126731744,chr8:126731744,chr8:126734258,chr8:126734259 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 299 3428 3357 ENST00000662410.1 ENST00000651999.1 downstream upstream duplicates(82),mismappers(1),mismatches(25) CGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTgCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|AGATCATCTGGTTCCATCTTGTCTTGAGAATGGACATCAAAGTACTATTTTTGTTGTGATTGTTCAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25544 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ 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NA NA 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126698135,chr8:126697176,chr8:126697176,chr8:126698302,chr8:126701610,chr8:126701616,chr8:126701616,chr8:126701649,chr8:126701654,chr8:126702949,chr8:126703004,chr8:126703057,chr8:126703087,chr8:126702724,chr8:126702724,chr8:126702724,chr8:126702728,chr8:126702772,chr8:126702888,chr8:126704679,chr8:126704679,chr8:126704679,chr8:126704706,chr8:126705325,chr8:126705669,chr8:126705669,chr8:126705669,chr8:126704471,chr8:126704471,chr8:126704471,chr8:126705913,chr8:126705913,chr8:126705968,chr8:126705987,chr8:126705987,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126705999,chr8:126706019,chr8:126706019,chr8:126706019,chr8:126704497,chr8:126704497,chr8:126706217,chr8:126706217,chr8:126706374,chr8:126706374,chr8:126706374,chr8:126704514,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704519,chr8:126704595,chr8:126704656,chr8:126709983,chr8:126709987,chr8:126710002,chr8:126711464,chr8:126711464,chr8:126711464,chr8:126711478,chr8:126711511,chr8:126711511,chr8:126711511,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711514,chr8:126711518,chr8:126711518,chr8:126711518,chr8:126711528,chr8:126711528,chr8:126711528,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711540,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711566,chr8:126711584,chr8:126711584,chr8:126711612,chr8:126711642,chr8:126711642,chr8:126711645,chr8:126711664,chr8:126711664,chr8:126711671,chr8:126711700,chr8:126712210,chr8:126712210,chr8:126712210,chr8:126710803,chr8:126710976,chr8:126710976,chr8:126710976,chr8:126720940,chr8:126720295,chr8:126727985,chr8:126728748,chr8:126678821,chr8:126693274,chr8:126862550,chr8:126675687,chr8:126885301,chr8:126678812,chr8:126885328,chr8:126678825,chr8:126677631,chr8:126693423,chr8:126711530,chr8:126675710,chr8:126885335,chr8:126711663,chr8:126693416,chr8:126885416,chr8:126693441,chr8:126711528,chr8:126677696,chr8:126711662,chr8:126676301,chr8:126862499,chr8:126885344,chr8:126675110,chr8:126711644,chr8:126877026,chr8:126862487,chr8:126676131,chr8:126885345,chr8:126675125,chr8:126711644,chr8:126675132,chr8:126885380,chr8:126675140,chr8:126885380,chr8:126711598,chr8:126675108,chr8:126885384,chr8:126677686,chr8:126711599,chr8:126693429,chr8:126693444,chr8:126711475,chr8:126675389,chr8:126885205,chr8:126711434,chr8:126731502,chr8:126731590,chr8:126731590,chr8:126731648,chr8:126731744,chr8:126731744,chr8:126732328,chr8:126734258,chr8:126734259,chr8:126736889,chr8:126736901,chr8:126736903,chr8:126736925,chr8:126736925,chr8:126736925,chr8:126736926,chr8:126736943,chr8:126736950,chr8:126736950,chr8:126736950,chr8:126737094,chr8:126737094,chr8:126737106,chr8:126737106,chr8:126737106,chr8:126737112,chr8:126737112,chr8:126737112,chr8:126737180,chr8:126737180,chr8:126737215,chr8:126737577,chr8:126738053,chr8:126738053,chr8:126736586,chr8:126744199 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 18 5 238 50295 6693 ENST00000651587.1 ENST00000651999.1 downstream upstream duplicates(99),mismappers(1),mismatches(17) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG___GCTAAGGTGTTCTATCTTCAGCAAAAAGGAACAATCTTAGAGTCTGGTGGAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25545 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ 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NA NA 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chr8:126736903,chr8:126736925,chr8:126736925,chr8:126736925,chr8:126736926,chr8:126736943,chr8:126736950,chr8:126736950,chr8:126736950,chr8:126737094,chr8:126737094,chr8:126737106,chr8:126737106,chr8:126737106,chr8:126737112,chr8:126737112,chr8:126737112,chr8:126737180,chr8:126737180,chr8:126737215,chr8:126737577,chr8:126738053,chr8:126738053,chr8:126736586,chr8:126744199,chr8:126747343,chr8:126749870,chr8:126763523,chr8:126763707,chr8:126763724,chr8:126763815,chr8:126763815,chr8:126763815,chr8:126763864,chr8:126763864,chr8:126762761,chr8:126885298,chr8:126885421,chr8:126885455,chr8:126885205,chr8:126885526,chr8:126884601,chr8:126885530 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 0 247 828 6693 ENST00000656491.1 ENST00000651999.1 downstream upstream duplicates(81),mismappers(1),mismatches(16) AGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGC...AATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG___GCTAAGGTGTTCTATCTTCAGCAAAAAGGAACAATCTTAGAGTCTGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25546 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + - chr8:125648327-126008930:+ chr8:125697098:- chr8:126660571-127021174:+ chr8:126709342:- 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NA NA 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chr8:126999761,chr8:126999698,chr8:126800678,chr8:126999681,chr8:127001058,chr8:126747263,chr8:126800688,chr8:126999691,chr8:126846856,chr8:127001626,chr8:126999763,chr8:126736320,chr8:126737021,chr8:126737021,chr8:126737021,chr8:126737090,chr8:126737090,chr8:126737090,chr8:126737085,chr8:126737085,chr8:126737085,chr8:126737070,chr8:126737140,chr8:126737140,chr8:126737140,chr8:126737136,chr8:126737136,chr8:126737124,chr8:126737176,chr8:126737268,chr8:126737268,chr8:126737838,chr8:126736944,chr8:126736944,chr8:126736922,chr8:126736922,chr8:126736949,chr8:126736928,chr8:126736963,chr8:126737006,chr8:126737006,chr8:126737015,chr8:126737015,chr8:126737059,chr8:126737059,chr8:126737039,chr8:126737039,chr8:126745873,chr8:126979615,chr8:126956777,chr8:126956932,chr8:126711572,chr8:126956790,chr8:126956979,chr8:126956851,chr8:126979791,chr8:126711550,chr8:126711572,chr8:126957015,chr8:126711445,chr8:126711548,chr8:126756941,chr8:126763715,chr8:126763715,chr8:126763782,chr8:126763779,chr8:126763779,chr8:126763811,chr8:126763811,chr8:126763811,chr8:126763870,chr8:126763866,chr8:126763866,chr8:126763905,chr8:126763905,chr8:126764327,chr8:126766570,chr8:126766570,chr8:126766680,chr8:126766774,chr8:126766819,chr8:126766819,chr8:126775861,chr8:126775888,chr8:126776011,chr8:126776042,chr8:126776061,chr8:126776417,chr8:126776417,chr8:126776637,chr8:126776675,chr8:126776675,chr8:126776634,chr8:126776634,chr8:126776634,chr8:126776634,chr8:126776662,chr8:126776662,chr8:126776662,chr8:126776673,chr8:126776710,chr8:126776710,chr8:126776710,chr8:126776777,chr8:126776846,chr8:126776792,chr8:126776864,chr8:126776864,chr8:126786543,chr8:126787044,chr8:126862572,chr8:126885320,chr8:126885340,chr8:126711569 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none none 3 1 7 50295 117 ENST00000667305.1 unknown downstream downstream duplicates(1) GGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|TTTCTAGGCTGGTTCTTACGACACTGTTTATTCCTTGGGAAATGTCACCAGGAGCAAGTCACTGCAGTTGAGACGGGTCATGAATCGTTCTGCAGGGCTGAATCACAGCCGAAGCGTGGCCCAGGATGGTCAG___ATGGAGTTTCGCTTTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCAGCTCACCACAACCTCCGAC...AGAAACCCTGATCATCCACCGTAGCATATTCAGcATTTATGGAATCCTCCACACTGAAGTCTTTGGACAGATTCCATTAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25547 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4301 TRUE 1628 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:126008193:+ chr8:126660571-127021174:+ chr8:127020437:+ 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NA NA 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chr8:126736925,chr8:126736925,chr8:126736926,chr8:126736943,chr8:126736950,chr8:126736950,chr8:126736950,chr8:126737094,chr8:126737106,chr8:126737106,chr8:126737112,chr8:126737112,chr8:126737112,chr8:126737112,chr8:126737124,chr8:126737180,chr8:126737215,chr8:126737577,chr8:126738053,chr8:126738053,chr8:126736586,chr8:126678821,chr8:126693274,chr8:126862550,chr8:126675687,chr8:126885301,chr8:126678812,chr8:126885328,chr8:126678825,chr8:126677631,chr8:126693423,chr8:126711530,chr8:126675710,chr8:126885335,chr8:126711663,chr8:126693416,chr8:126885416,chr8:126693441,chr8:126711528,chr8:126677696,chr8:126711662,chr8:126676301,chr8:126862499,chr8:126885344,chr8:126675110,chr8:126711644,chr8:126877026,chr8:126862487,chr8:126676131,chr8:126885345,chr8:126675125,chr8:126711644,chr8:126675132,chr8:126885380,chr8:126675140,chr8:126885380,chr8:126711598,chr8:126675108,chr8:126885384,chr8:126677686,chr8:126711599,chr8:126693429,chr8:126693444,chr8:126711475,chr8:126675389,chr8:126885205,chr8:126711434,chr8:126741032,chr8:126744199,chr8:126745737,chr8:126747343,chr8:126749870 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 3 0 1 50295 210 ENST00000651587.1 ENST00000652177.1 downstream upstream mismatches(1) CGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CGCTGCTGGGTTAGGGTCTCCCCGACCTAGCTGGTCTCGGCAAGTGGCATCCATTGTGGGGACTGAATCCAGGTCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25548 PVT1::LINC00861 ENSG00000249859.14::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC00861 ENSG00000245164.10 lncRNA - + chr8:125859721-126292788:- chr8:126085598:+ chr8:126871965-127305033:- chr8:127097842:+ chr8:127914137,chr8:127914137,chr8:127914137,chr8:127914138,chr8:127914137,chr8:127914137,chr8:127914137,chr8:127914137,chr8:127914137,chr8:127914779,chr8:127914840,chr8:127914838,chr8:127914954,chr8:127914954,chr8:127914950,chr8:127912703,chr8:127912761,chr8:127912761,chr8:127912895,chr8:127912895,chr8:127912946,chr8:127912946,chr8:127913068,chr8:127913080,chr8:127913080,chr8:127913149,chr8:127913142,chr8:127913149,chr8:127913149,chr8:127913149,chr8:127913141,chr8:127913141,chr8:127913357,chr8:127914140,chr8:127914137,chr8:127914136,chr8:127914135,chr8:127906973,chr8:127908480,chr8:127903061,chr8:127903233,chr8:127914836,chr8:127914915,chr8:127912564,chr8:127906783,chr8:127893554,chr8:127907249,chr8:127914136,chr8:127914134,chr8:127914135,chr8:127914131,chr8:127914117,chr8:127914130,chr8:127914136,chr8:127914135,chr8:127914137,chr8:127915182 chr8:126082436,chr8:126082448,chr8:126082452,chr8:126082437,chr8:126082465,chr8:126082441,chr8:126082439,chr8:126082457,chr8:126082440,chr8:125978900,chr8:125940291,chr8:125907968,chr8:125907888,chr8:125948739,chr8:125907883,chr8:125907977,chr8:125907929,chr8:125948786,chr8:125948660,chr8:125978850,chr8:125948646,chr8:125978860,chr8:125948679,chr8:125907978,chr8:125948663,chr8:125994693,chr8:125907839,chr8:125907827,chr8:125948673,chr8:125978821,chr8:125907827,chr8:125948676,chr8:125907828,chr8:126082439,chr8:126082438,chr8:126082439,chr8:126082435,chr8:125897062,chr8:125896814,chr8:125954987,chr8:125954740,chr8:125978817,chr8:125978933,chr8:125994608,chr8:126016961,chr8:125923574,chr8:126048983,chr8:126082432,chr8:126082432,chr8:126082432,chr8:126082429,chr8:126082432,chr8:126082432,chr8:126082433,chr8:126082433,chr8:126082434,chr8:126082438 NA NA chr8:128926383,chr8:128926383,chr8:128926383,chr8:128926384,chr8:128926383,chr8:128926383,chr8:128926383,chr8:128926383,chr8:128926383,chr8:128927025,chr8:128927086,chr8:128927084,chr8:128927200,chr8:128927200,chr8:128927196,chr8:128924949,chr8:128925007,chr8:128925007,chr8:128925141,chr8:128925141,chr8:128925192,chr8:128925192,chr8:128925314,chr8:128925326,chr8:128925326,chr8:128925395,chr8:128925388,chr8:128925395,chr8:128925395,chr8:128925395,chr8:128925387,chr8:128925387,chr8:128925603,chr8:128926386,chr8:128926383,chr8:128926382,chr8:128926381,chr8:128919219,chr8:128920726,chr8:128915307,chr8:128915479,chr8:128927082,chr8:128927161,chr8:128924810,chr8:128919029,chr8:128905800,chr8:128919495,chr8:128926382,chr8:128926380,chr8:128926381,chr8:128926377,chr8:128926363,chr8:128926376,chr8:128926382,chr8:128926381,chr8:128926383,chr8:128927428 chr8:127094680,chr8:127094692,chr8:127094696,chr8:127094681,chr8:127094709,chr8:127094685,chr8:127094683,chr8:127094701,chr8:127094684,chr8:126991144,chr8:126952535,chr8:126920212,chr8:126920132,chr8:126960983,chr8:126920127,chr8:126920221,chr8:126920173,chr8:126961030,chr8:126960904,chr8:126991094,chr8:126960890,chr8:126991104,chr8:126960923,chr8:126920222,chr8:126960907,chr8:127006937,chr8:126920083,chr8:126920071,chr8:126960917,chr8:126991065,chr8:126920071,chr8:126960920,chr8:126920072,chr8:127094683,chr8:127094682,chr8:127094683,chr8:127094679,chr8:126909306,chr8:126909058,chr8:126967231,chr8:126966984,chr8:126991061,chr8:126991177,chr8:127006852,chr8:127029205,chr8:126935818,chr8:127061227,chr8:127094676,chr8:127094676,chr8:127094676,chr8:127094673,chr8:127094676,chr8:127094676,chr8:127094677,chr8:127094677,chr8:127094678,chr8:127094682 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 300 300 296 11923 5853 ENST00000651587.1 unknown downstream upstream duplicates(264),low_entropy(4),mismappers(3),mismatches(65),multimappers(1) AGTATTTTCTGAGCCTGATGGATTTACAGTGATCTTCAGTGGTCTGGGGAATAACGCTGGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GTTGAGAACCACTGTCCTAGTCTGAAGGAACCTCTTGTGGAACATTGGCAAGACCCTTACTGAGCAGAAGCCTAGCACCCTGAGCATCCAGGAGAAGAAAATATTTGTGATCTACGGGCTCAGTGAAGAATTATGGAGGACTTCAG___GATCTAGAAGGAAGCTTTGCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25549 PVT1::SNTB1 ENSG00000249859.14::ENSG00000172164.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2349 TRUE 4302 TRUE 1629 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120542000:- chr8:121547985-121825513:- chr8:121554240:- chr8:127803739,chr8:127803816,chr8:127803816,chr8:127803978,chr8:127804000,chr8:127804000,chr8:127803233,chr8:127808948,chr8:127809029,chr8:127809029,chr8:127816682,chr8:127816733,chr8:127816711,chr8:127841717,chr8:127841892,chr8:127841498,chr8:127841491,chr8:127841502,chr8:127872359,chr8:127872373,chr8:127871990,chr8:127816705,chr8:127803949,chr8:127841523,chr8:127803190,chr8:127841787,chr8:127803923,chr8:127816726,chr8:127816744,chr8:127872224,chr8:127841523,chr8:127803953,chr8:127803161 chr8:120542663,chr8:120542578,chr8:120633529,chr8:120542576,chr8:120542470,chr8:120633425,chr8:120542569,chr8:120744136,chr8:120744139,chr8:120543976,chr8:120542514,chr8:120542464,chr8:120542477,chr8:120542571,chr8:120542566,chr8:120542449,chr8:120542453,chr8:120542445,chr8:120542568,chr8:120542591,chr8:120542569,chr8:120542436,chr8:120542520,chr8:120542543,chr8:120542612,chr8:120542612,chr8:120542637,chr8:120542637,chr8:120542449,chr8:120542449,chr8:120542420,chr8:120542441,chr8:120542465 NA NA chr8:128815985,chr8:128816062,chr8:128816062,chr8:128816224,chr8:128816246,chr8:128816246,chr8:128815479,chr8:128821194,chr8:128821275,chr8:128821275,chr8:128828928,chr8:128828979,chr8:128828957,chr8:128853963,chr8:128854138,chr8:128853744,chr8:128853737,chr8:128853748,chr8:128884605,chr8:128884619,chr8:128884236,chr8:128828951,chr8:128816195,chr8:128853769,chr8:128815436,chr8:128854033,chr8:128816169,chr8:128828972,chr8:128828990,chr8:128884470,chr8:128853769,chr8:128816199,chr8:128815407 chr8:121554903,chr8:121554818,chr8:121645769,chr8:121554816,chr8:121554710,chr8:121645665,chr8:121554809,chr8:121756376,chr8:121756379,chr8:121556216,chr8:121554754,chr8:121554704,chr8:121554717,chr8:121554811,chr8:121554806,chr8:121554689,chr8:121554693,chr8:121554685,chr8:121554808,chr8:121554831,chr8:121554809,chr8:121554676,chr8:121554760,chr8:121554783,chr8:121554852,chr8:121554852,chr8:121554877,chr8:121554877,chr8:121554689,chr8:121554689,chr8:121554660,chr8:121554681,chr8:121554705 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none none |MTBP_C(100%) 282 301 300 50295 23586 ENST00000667305.1 ENST00000395601.7 downstream downstream duplicates(231),mismappers(25),mismatches(105) CGCGCTCCTCCGGGCAGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGGGTGCCTTTC...GGAGAGATT___CAACTGGACCTTCATTCCTGCCCCAAGCCAATTGTTTTCATCATTCATTCCTTCCTGTCAGCTAAGATTACAAGACTGGGCTTGGTGGCCTGAAGACA...CACCATCTGTAGTGAGCAGCGCACCAGATGTAGCGTGCTACAGTCAGCTTTAGCTCTCAAGAGTCGTATGTAACTGTCCCAGACTCCTCTGTCAGTTTCAGCAACTACAAGGGATACCCTGCGAAAGTACCATGAGAAATATCAGAGTAAAACTTTCTAGAACAGTACAAGGTTAAAGAGGTGAGGTGACGGGAAATACACAGCATAGCTTTGAAATAATGACAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25550 PVT1::SNTB1 ENSG00000249859.14::ENSG00000172164.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4302 TRUE 1629 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120538969:- chr8:121547985-121825513:- chr8:121551209:- chr8:127841717,chr8:127841892,chr8:127841498,chr8:127841491,chr8:127841502,chr8:127872359,chr8:127872373,chr8:127871990,chr8:127841523,chr8:127841787,chr8:127872224,chr8:127841523 chr8:120542571,chr8:120542566,chr8:120542449,chr8:120542453,chr8:120542445,chr8:120542568,chr8:120542591,chr8:120542569,chr8:120542543,chr8:120542612,chr8:120542449,chr8:120542420 NA NA chr8:128853963,chr8:128854138,chr8:128853744,chr8:128853737,chr8:128853748,chr8:128884605,chr8:128884619,chr8:128884236,chr8:128853769,chr8:128854033,chr8:128884470,chr8:128853769 chr8:121554811,chr8:121554806,chr8:121554689,chr8:121554693,chr8:121554685,chr8:121554808,chr8:121554831,chr8:121554809,chr8:121554783,chr8:121554852,chr8:121554689,chr8:121554660 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none none |MTBP_C(100%) 1 0 300 828 39307 ENST00000654105.1 ENST00000395601.7 downstream downstream duplicates(54),mismatches(97) CAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|CAACTGGACCTTCATTCCTGCCCCAAGCCAATTGTTTTCATCATTCATTCCTTCCTGTCAGCTAAGATTACAAGACTGGGCTTGGTGGCCTGAAGACAGGGGTGACTTGCCTTTGAGAAAAGAAGGGCTGCAATGCCACCAGAGAACGTGATGTCAGACACCATCTGTAGTGAGCAGCGCACCAGATGTAGCGTGCTACAGTCAGCTTTAGCTCTCAAGAGTCGTATGTAACTGTCCCAGACTCCTCTGTCAGTTTCAGCAACTACAAGGGATACCCTGCGAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25552 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4303 TRUE 1630 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC8 ENSG00000246228.7 lncRNA - + chr8:127289808-127482139:- chr8:127457380:+ chr8:128302053-128494384:- chr8:128469625:+ chr8:127907071,chr8:127907028,chr8:127907028,chr8:127907205,chr8:127906974,chr8:127907209,chr8:127907218,chr8:127905594,chr8:127909710,chr8:127910076,chr8:127910878,chr8:127912594,chr8:127909422 chr8:127329766,chr8:127329774,chr8:127329782,chr8:127329604,chr8:127329720,chr8:127329546,chr8:127329531,chr8:127329781,chr8:127384412,chr8:127384489,chr8:127325047,chr8:127325228,chr8:127437873 NA NA chr8:128919317,chr8:128919274,chr8:128919274,chr8:128919451,chr8:128919220,chr8:128919455,chr8:128919464,chr8:128917840,chr8:128921956,chr8:128922322,chr8:128923124,chr8:128924840,chr8:128921668 chr8:128342011,chr8:128342019,chr8:128342027,chr8:128341849,chr8:128341965,chr8:128341791,chr8:128341776,chr8:128342026,chr8:128396657,chr8:128396734,chr8:128337292,chr8:128337473,chr8:128450118 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 256 267 298 11923 1142 ENST00000651587.1 unknown downstream upstream duplicates(201),low_entropy(5),mismappers(7),mismatches(20) GGTGGAACCATGCACTGGAATGACACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|ATGAAGCAAGTTTCCATGTTGTGAGCTGCCCTGTGAGAAGGTTTACTTGCTAGGAACTAAGAGTGGCCTCCAGCCAACAGCCAaCAAGGAAGTGAAGCCCTCAGTCTAACAGCTTGGGAGAAACTGAATTGTGCCATCAATCATGTGAGTGAGCTTGGAAGCTCTTCTATCCCCAGTCCAACCATAACAGGACTACATCCCTGGCCAACACTTTAATGACAGCTTGTGAGAGACCCTGAGACAGAAGACTCAGCTAAGCCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25553 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4303 TRUE 1630 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420963:- chr8:128302053-128494384:- chr8:128433208:- chr8:127815962,chr8:127816003,chr8:127824457,chr8:127824457,chr8:127823618,chr8:127846794,chr8:127846823,chr8:127846823,chr8:127846835,chr8:127846796,chr8:127846960,chr8:127847087,chr8:127847062,chr8:127847137,chr8:127847134,chr8:127847187,chr8:127847221,chr8:127847221,chr8:127847221,chr8:127847219,chr8:127847853,chr8:127848477,chr8:127848562,chr8:127848615,chr8:127848972,chr8:127848293,chr8:127848326,chr8:127848458,chr8:127848488,chr8:127848488,chr8:127798426,chr8:127798676,chr8:127798830,chr8:127798052,chr8:127798268,chr8:127798306,chr8:127850757,chr8:127850786,chr8:127850786,chr8:127858766,chr8:127858148,chr8:127858285,chr8:127861453,chr8:127863893,chr8:127864243,chr8:127863350,chr8:127868606,chr8:127879523,chr8:127880381,chr8:127880452,chr8:127880348,chr8:127882575,chr8:127882657,chr8:127882737,chr8:127882586,chr8:127893342,chr8:127803668,chr8:127803739,chr8:127803749,chr8:127803368,chr8:127803233,chr8:127803211,chr8:127901279,chr8:127910268,chr8:127913357,chr8:127913022,chr8:127913022,chr8:127913068,chr8:127913068,chr8:127914136,chr8:127914137,chr8:127913080,chr8:127913080,chr8:127913142,chr8:127913142,chr8:127913149,chr8:127913149,chr8:127848448,chr8:127882759,chr8:127882682,chr8:127804948,chr8:127805081,chr8:127805170,chr8:127906976,chr8:127848540,chr8:127798730,chr8:127798245,chr8:127816020,chr8:127815992,chr8:127806439,chr8:127908620,chr8:127798246,chr8:127858355,chr8:127803227,chr8:127805050,chr8:127808978,chr8:127798723,chr8:127798777,chr8:127803261,chr8:127798768,chr8:127858173,chr8:127861391,chr8:127803391,chr8:127888202,chr8:127805192,chr8:127858162,chr8:127861380,chr8:127803399,chr8:127888210,chr8:127805200,chr8:127913120,chr8:127808318,chr8:127858171,chr8:127861389,chr8:127803400,chr8:127888211,chr8:127805201,chr8:127861390,chr8:127803416,chr8:127888229,chr8:127805210,chr8:127861374,chr8:127803400,chr8:127888211,chr8:127805201,chr8:127913121,chr8:127808319,chr8:127803417,chr8:127888230,chr8:127805222,chr8:127808780,chr8:127880861,chr8:127808310,chr8:127798216,chr8:127858319,chr8:127803249,chr8:127880410,chr8:127805051,chr8:127858353,chr8:127808976,chr8:127805174,chr8:127858321,chr8:127803255,chr8:127908474,chr8:127914501,chr8:127824425,chr8:127913117,chr8:127847192,chr8:127847216,chr8:127824166,chr8:127913058,chr8:127863194,chr8:127913226,chr8:127847053,chr8:127863370,chr8:127863236,chr8:127873260,chr8:127847211,chr8:127850857,chr8:127857481,chr8:127846944,chr8:127856992,chr8:127893405,chr8:127847193,chr8:127846959,chr8:127850931,chr8:127808755,chr8:127808844,chr8:127808862,chr8:127808881,chr8:127808936,chr8:127808932,chr8:127809029,chr8:127809019,chr8:127809038,chr8:127809039,chr8:127808313 chr8:127451240,chr8:127451199,chr8:127461363,chr8:127429177,chr8:127430946,chr8:127471834,chr8:127461406,chr8:127478004,chr8:127478646,chr8:127471834,chr8:127461323,chr8:127477878,chr8:127478061,chr8:127461363,chr8:127461397,chr8:127471784,chr8:127461292,chr8:127471711,chr8:127477862,chr8:127471708,chr8:127471863,chr8:127441913,chr8:127429176,chr8:127441912,chr8:127441913,chr8:127441833,chr8:127429080,chr8:127441879,chr8:127429236,chr8:127429176,chr8:127441844,chr8:127456533,chr8:127456787,chr8:127456776,chr8:127455108,chr8:127446756,chr8:127461400,chr8:127461264,chr8:127429268,chr8:127457124,chr8:127456776,chr8:127456700,chr8:127455003,chr8:127429076,chr8:127429068,chr8:127471708,chr8:127456601,chr8:127461414,chr8:127456612,chr8:127456704,chr8:127456544,chr8:127429104,chr8:127429204,chr8:127429262,chr8:127429124,chr8:127478063,chr8:127456609,chr8:127456530,chr8:127456550,chr8:127456768,chr8:127456627,chr8:127456611,chr8:127471896,chr8:127438427,chr8:127461351,chr8:127456704,chr8:127471782,chr8:127456711,chr8:127471775,chr8:127456312,chr8:127456311,chr8:127454962,chr8:127461324,chr8:127456703,chr8:127471798,chr8:127461362,chr8:127471786,chr8:127429714,chr8:127429714,chr8:127429150,chr8:127456526,chr8:127456705,chr8:127457111,chr8:127439310,chr8:127441845,chr8:127441946,chr8:127446804,chr8:127451167,chr8:127451196,chr8:127461482,chr8:127454359,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127456514,chr8:127456623,chr8:127456623,chr8:127456636,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456731,chr8:127456731,chr8:127456731,chr8:127456731,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127454999,chr8:127455041,chr8:127455041,chr8:127455048,chr8:127455048,chr8:127455048,chr8:127455048,chr8:127455048,chr8:127455067,chr8:127455067,chr8:127455037,chr8:127455033,chr8:127455033,chr8:127457842,chr8:127462034,chr8:127461296,chr8:127461296,chr8:127461284,chr8:127461318,chr8:127461513,chr8:127471566,chr8:127471722,chr8:127471788,chr8:127471906,chr8:127471974,chr8:127472869,chr8:127474815,chr8:127477902,chr8:127477902,chr8:127477910,chr8:127477689,chr8:127477689,chr8:127477689,chr8:127477751,chr8:127477826,chr8:127481823,chr8:127456796,chr8:127456709,chr8:127456695,chr8:127456528,chr8:127456610,chr8:127456610,chr8:127456529,chr8:127456532,chr8:127456528,chr8:127456528,chr8:127456793 NA NA chr8:128828208,chr8:128828249,chr8:128836703,chr8:128836703,chr8:128835864,chr8:128859040,chr8:128859069,chr8:128859069,chr8:128859081,chr8:128859042,chr8:128859206,chr8:128859333,chr8:128859308,chr8:128859383,chr8:128859380,chr8:128859433,chr8:128859467,chr8:128859467,chr8:128859467,chr8:128859465,chr8:128860099,chr8:128860723,chr8:128860808,chr8:128860861,chr8:128861218,chr8:128860539,chr8:128860572,chr8:128860704,chr8:128860734,chr8:128860734,chr8:128810672,chr8:128810922,chr8:128811076,chr8:128810298,chr8:128810514,chr8:128810552,chr8:128863003,chr8:128863032,chr8:128863032,chr8:128871012,chr8:128870394,chr8:128870531,chr8:128873699,chr8:128876139,chr8:128876489,chr8:128875596,chr8:128880852,chr8:128891769,chr8:128892627,chr8:128892698,chr8:128892594,chr8:128894821,chr8:128894903,chr8:128894983,chr8:128894832,chr8:128905588,chr8:128815914,chr8:128815985,chr8:128815995,chr8:128815614,chr8:128815479,chr8:128815457,chr8:128913525,chr8:128922514,chr8:128925603,chr8:128925268,chr8:128925268,chr8:128925314,chr8:128925314,chr8:128926382,chr8:128926383,chr8:128925326,chr8:128925326,chr8:128925388,chr8:128925388,chr8:128925395,chr8:128925395,chr8:128860694,chr8:128895005,chr8:128894928,chr8:128817194,chr8:128817327,chr8:128817416,chr8:128919222,chr8:128860786,chr8:128810976,chr8:128810491,chr8:128828266,chr8:128828238,chr8:128818685,chr8:128920866,chr8:128810492,chr8:128870601,chr8:128815473,chr8:128817296,chr8:128821224,chr8:128810969,chr8:128811023,chr8:128815507,chr8:128811014,chr8:128870419,chr8:128873637,chr8:128815637,chr8:128900448,chr8:128817438,chr8:128870408,chr8:128873626,chr8:128815645,chr8:128900456,chr8:128817446,chr8:128925366,chr8:128820564,chr8:128870417,chr8:128873635,chr8:128815646,chr8:128900457,chr8:128817447,chr8:128873636,chr8:128815662,chr8:128900475,chr8:128817456,chr8:128873620,chr8:128815646,chr8:128900457,chr8:128817447,chr8:128925367,chr8:128820565,chr8:128815663,chr8:128900476,chr8:128817468,chr8:128821026,chr8:128893107,chr8:128820556,chr8:128810462,chr8:128870565,chr8:128815495,chr8:128892656,chr8:128817297,chr8:128870599,chr8:128821222,chr8:128817420,chr8:128870567,chr8:128815501,chr8:128920720,chr8:128926747,chr8:128836671,chr8:128925363,chr8:128859438,chr8:128859462,chr8:128836412,chr8:128925304,chr8:128875440,chr8:128925472,chr8:128859299,chr8:128875616,chr8:128875482,chr8:128885506,chr8:128859457,chr8:128863103,chr8:128869727,chr8:128859190,chr8:128869238,chr8:128905651,chr8:128859439,chr8:128859205,chr8:128863177,chr8:128821001,chr8:128821090,chr8:128821108,chr8:128821127,chr8:128821182,chr8:128821178,chr8:128821275,chr8:128821265,chr8:128821284,chr8:128821285,chr8:128820559 chr8:128463485,chr8:128463444,chr8:128473608,chr8:128441422,chr8:128443191,chr8:128484079,chr8:128473651,chr8:128490249,chr8:128490891,chr8:128484079,chr8:128473568,chr8:128490123,chr8:128490306,chr8:128473608,chr8:128473642,chr8:128484029,chr8:128473537,chr8:128483956,chr8:128490107,chr8:128483953,chr8:128484108,chr8:128454158,chr8:128441421,chr8:128454157,chr8:128454158,chr8:128454078,chr8:128441325,chr8:128454124,chr8:128441481,chr8:128441421,chr8:128454089,chr8:128468778,chr8:128469032,chr8:128469021,chr8:128467353,chr8:128459001,chr8:128473645,chr8:128473509,chr8:128441513,chr8:128469369,chr8:128469021,chr8:128468945,chr8:128467248,chr8:128441321,chr8:128441313,chr8:128483953,chr8:128468846,chr8:128473659,chr8:128468857,chr8:128468949,chr8:128468789,chr8:128441349,chr8:128441449,chr8:128441507,chr8:128441369,chr8:128490308,chr8:128468854,chr8:128468775,chr8:128468795,chr8:128469013,chr8:128468872,chr8:128468856,chr8:128484141,chr8:128450672,chr8:128473596,chr8:128468949,chr8:128484027,chr8:128468956,chr8:128484020,chr8:128468557,chr8:128468556,chr8:128467207,chr8:128473569,chr8:128468948,chr8:128484043,chr8:128473607,chr8:128484031,chr8:128441959,chr8:128441959,chr8:128441395,chr8:128468771,chr8:128468950,chr8:128469356,chr8:128451555,chr8:128454090,chr8:128454191,chr8:128459049,chr8:128463412,chr8:128463441,chr8:128473727,chr8:128466604,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128468759,chr8:128468868,chr8:128468868,chr8:128468881,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468976,chr8:128468976,chr8:128468976,chr8:128468976,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128467244,chr8:128467286,chr8:128467286,chr8:128467293,chr8:128467293,chr8:128467293,chr8:128467293,chr8:128467293,chr8:128467312,chr8:128467312,chr8:128467282,chr8:128467278,chr8:128467278,chr8:128470087,chr8:128474279,chr8:128473541,chr8:128473541,chr8:128473529,chr8:128473563,chr8:128473758,chr8:128483811,chr8:128483967,chr8:128484033,chr8:128484151,chr8:128484219,chr8:128485114,chr8:128487060,chr8:128490147,chr8:128490147,chr8:128490155,chr8:128489934,chr8:128489934,chr8:128489934,chr8:128489996,chr8:128490071,chr8:128494068,chr8:128469041,chr8:128468954,chr8:128468940,chr8:128468773,chr8:128468855,chr8:128468855,chr8:128468774,chr8:128468777,chr8:128468773,chr8:128468773,chr8:128469038 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 6 4 12 50295 22 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(8),mismatches(5) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25554 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4303 TRUE 1630 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127830409,chr8:127837131,chr8:127801391,chr8:127860548,chr8:127882377,chr8:127860541,chr8:127860630,chr8:127879259,chr8:127882648,chr8:127907369,chr8:127821727,chr8:127838023,chr8:127860697,chr8:127869939,chr8:127881592,chr8:127798131,chr8:127827216,chr8:127801465,chr8:127861430,chr8:127881964,chr8:127838083,chr8:127838006,chr8:127801256,chr8:127882528,chr8:127880322,chr8:127882517,chr8:127821727,chr8:127860688,chr8:127881885,chr8:127861392,chr8:127798228,chr8:127827111,chr8:127829201,chr8:127838013,chr8:127869919,chr8:127879453,chr8:127831064,chr8:127910915,chr8:127798058,chr8:127861364,chr8:127880529,chr8:127798164,chr8:127838070,chr8:127907133,chr8:127861383,chr8:127869905,chr8:127882585,chr8:127821824,chr8:127860787,chr8:127880606,chr8:127882497,chr8:127906963,chr8:127890540,chr8:127802035,chr8:127858355,chr8:127815994,chr8:127815263,chr8:127853672,chr8:127885988,chr8:127815262,chr8:127815497,chr8:127815890,chr8:127815922,chr8:127815915,chr8:127815962,chr8:127815962,chr8:127816003,chr8:127816364,chr8:127815071,chr8:127815071,chr8:127815133,chr8:127815133,chr8:127815180,chr8:127890680,chr8:127827216,chr8:127845885,chr8:127847212,chr8:127882682,chr8:127846703,chr8:127906976,chr8:127859147,chr8:127848540,chr8:127798730,chr8:127798245,chr8:127816020,chr8:127838036,chr8:127815992,chr8:127838026,chr8:127872187,chr8:127908620,chr8:127798246,chr8:127858355,chr8:127805050,chr8:127879477,chr8:127808978,chr8:127798723,chr8:127798777,chr8:127803261,chr8:127807900,chr8:127798768,chr8:127860633,chr8:127803391,chr8:127858173,chr8:127861391,chr8:127805192,chr8:127888202,chr8:127814045,chr8:127860756,chr8:127879520,chr8:127888017,chr8:127808103,chr8:127803399,chr8:127861380,chr8:127805200,chr8:127879300,chr8:127888210,chr8:127913120,chr8:127814053,chr8:127803400,chr8:127858171,chr8:127861389,chr8:127805201,chr8:127888211,chr8:127814054,chr8:127803416,chr8:127861390,chr8:127805210,chr8:127888229,chr8:127814062,chr8:127802874,chr8:127803400,chr8:127856991,chr8:127861374,chr8:127805201,chr8:127913121,chr8:127808319,chr8:127814054,chr8:127802938,chr8:127803417,chr8:127805222,chr8:127888230,chr8:127879569,chr8:127860623,chr8:127860650,chr8:127808780,chr8:127802043,chr8:127798216,chr8:127805051,chr8:127858353,chr8:127813882,chr8:127802159,chr8:127805174,chr8:127858321,chr8:127807894,chr8:127814042,chr8:127908474,chr8:127914501,chr8:127824425,chr8:127913117,chr8:127847192,chr8:127847216,chr8:127824166,chr8:127913058,chr8:127848567,chr8:127863194,chr8:127880373,chr8:127913226,chr8:127847053,chr8:127848454,chr8:127863370,chr8:127863236,chr8:127873260,chr8:127847211,chr8:127850857,chr8:127857481,chr8:127893405,chr8:127848103,chr8:127848558,chr8:127847193,chr8:127850931,chr8:127822311,chr8:127822400,chr8:127821693,chr8:127821729,chr8:127821822,chr8:127821831,chr8:127824457,chr8:127824457,chr8:127823618,chr8:127827013,chr8:127827498,chr8:127827030,chr8:127827550,chr8:127827013,chr8:127827013,chr8:127829036,chr8:127829064,chr8:127829169,chr8:127798306,chr8:127798306,chr8:127798426,chr8:127798426,chr8:127798676,chr8:127798830,chr8:127798830,chr8:127798052,chr8:127798052,chr8:127798268,chr8:127831137,chr8:127829742,chr8:127829795,chr8:127834717,chr8:127835494,chr8:127836368,chr8:127838537,chr8:127838003,chr8:127837988,chr8:127837988,chr8:127838008,chr8:127845460,chr8:127846794,chr8:127846823,chr8:127846823,chr8:127846835,chr8:127846796,chr8:127846960,chr8:127847087,chr8:127847062,chr8:127847062,chr8:127847137,chr8:127847137,chr8:127847137,chr8:127847169,chr8:127847134,chr8:127847187,chr8:127847221,chr8:127847221,chr8:127847221,chr8:127847221,chr8:127847219,chr8:127847219,chr8:127847853,chr8:127848293,chr8:127848326,chr8:127848326,chr8:127848401,chr8:127848458,chr8:127848488,chr8:127848497,chr8:127848488,chr8:127848488,chr8:127848488,chr8:127848477,chr8:127848477,chr8:127848530,chr8:127848562,chr8:127848562,chr8:127848562,chr8:127848564,chr8:127848615,chr8:127848615,chr8:127848686,chr8:127845807,chr8:127848972,chr8:127845790,chr8:127850757,chr8:127850786,chr8:127850786,chr8:127801475,chr8:127801806,chr8:127801890,chr8:127857147,chr8:127857147,chr8:127857147,chr8:127857147,chr8:127857204,chr8:127857452,chr8:127857474,chr8:127857564,chr8:127857571,chr8:127857674,chr8:127857674,chr8:127857674,chr8:127857674,chr8:127857694,chr8:127858148,chr8:127858148,chr8:127858148,chr8:127858167,chr8:127858186,chr8:127858177,chr8:127858285,chr8:127858285,chr8:127858267,chr8:127858451,chr8:127858766,chr8:127857018,chr8:127859107,chr8:127860757,chr8:127860782,chr8:127860782,chr8:127860785,chr8:127860977,chr8:127860445,chr8:127861453,chr8:127861417,chr8:127860630,chr8:127860651,chr8:127863350,chr8:127863350,chr8:127863893,chr8:127863893,chr8:127862881,chr8:127864243,chr8:127864243,chr8:127868606,chr8:127869888,chr8:127869925,chr8:127869940,chr8:127869968,chr8:127802025,chr8:127802429,chr8:127802381,chr8:127802415,chr8:127802445,chr8:127802445,chr8:127802576,chr8:127802915,chr8:127803233,chr8:127803233,chr8:127803211,chr8:127803211,chr8:127803368,chr8:127803624,chr8:127803668,chr8:127803739,chr8:127803749,chr8:127803749,chr8:127802010,chr8:127802120,chr8:127802094,chr8:127802158,chr8:127872189,chr8:127872373,chr8:127872373,chr8:127879331,chr8:127879367,chr8:127879486,chr8:127879486,chr8:127879440,chr8:127879438,chr8:127879468,chr8:127879468,chr8:127879468,chr8:127879523,chr8:127880348,chr8:127880348,chr8:127880348,chr8:127880381,chr8:127880381,chr8:127880381,chr8:127880452,chr8:127880452,chr8:127880533,chr8:127878911,chr8:127882044,chr8:127882429,chr8:127882543,chr8:127882586,chr8:127882618,chr8:127882575,chr8:127882657,chr8:127882737,chr8:127882737,chr8:127882737,chr8:127881706,chr8:127881706,chr8:127883019,chr8:127883086,chr8:127881539,chr8:127885220,chr8:127891106,chr8:127890805,chr8:127890805,chr8:127804948,chr8:127805081,chr8:127805170,chr8:127893342,chr8:127901279,chr8:127906922,chr8:127905594,chr8:127905594,chr8:127907113,chr8:127907263,chr8:127909710,chr8:127910036,chr8:127910268,chr8:127910878,chr8:127912594,chr8:127912594,chr8:127912594,chr8:127913357,chr8:127913022,chr8:127913022,chr8:127913068,chr8:127913068,chr8:127914136,chr8:127914137,chr8:127913080,chr8:127913080,chr8:127913142,chr8:127913142,chr8:127913149,chr8:127913149,chr8:127806439,chr8:127806452,chr8:127848465,chr8:127848535,chr8:127881881,chr8:127834437,chr8:127802338,chr8:127807996,chr8:127807817,chr8:127807836,chr8:127807864,chr8:127807902,chr8:127807940,chr8:127808057,chr8:127808313,chr8:127808769,chr8:127808755,chr8:127808844,chr8:127808862,chr8:127808881,chr8:127808936,chr8:127808932,chr8:127809029,chr8:127808990,chr8:127809019,chr8:127809038,chr8:127809039,chr8:127807325,chr8:127833529,chr8:127863175,chr8:127907202,chr8:127905572,chr8:127834799,chr8:127885617,chr8:127863809,chr8:127885566,chr8:127848638,chr8:127848598,chr8:127848613,chr8:127848644,chr8:127848645,chr8:127848610,chr8:127908467,chr8:127848612,chr8:127848632,chr8:127908601,chr8:127848657,chr8:127848594,chr8:127848595,chr8:127848596,chr8:127848596,chr8:127848596,chr8:127908467,chr8:127908465,chr8:127848597,chr8:127848333,chr8:127848601,chr8:127848598,chr8:127908467,chr8:127908466,chr8:127848611,chr8:127848616,chr8:127848589,chr8:127848631,chr8:127882768,chr8:127858162,chr8:127858353,chr8:127816061,chr8:127806362,chr8:127836400,chr8:127884729,chr8:127813844 chr8:127383379,chr8:127383379,chr8:127384192,chr8:127384297,chr8:127384344,chr8:127384291,chr8:127384390,chr8:127384390,chr8:127384390,chr8:127384386,chr8:127384405,chr8:127384405,chr8:127384405,chr8:127384405,chr8:127384405,chr8:127384446,chr8:127384446,chr8:127384446,chr8:127384446,chr8:127384446,chr8:127384436,chr8:127384438,chr8:127384512,chr8:127384447,chr8:127384519,chr8:127384519,chr8:127384554,chr8:127384554,chr8:127384594,chr8:127384640,chr8:127385083,chr8:127385083,chr8:127385083,chr8:127385083,chr8:127385083,chr8:127385083,chr8:127385048,chr8:127385048,chr8:127385219,chr8:127385219,chr8:127385347,chr8:127385499,chr8:127385499,chr8:127385499,chr8:127385490,chr8:127385502,chr8:127385502,chr8:127385656,chr8:127385656,chr8:127385656,chr8:127385656,chr8:127385656,chr8:127382958,chr8:127393819,chr8:127393819,chr8:127394264,chr8:127393343,chr8:127396510,chr8:127396510,chr8:127393513,chr8:127393449,chr8:127393617,chr8:127393499,chr8:127393524,chr8:127393518,chr8:127451240,chr8:127451199,chr8:127393609,chr8:127393576,chr8:127374089,chr8:127393578,chr8:127374090,chr8:127393460,chr8:127406936,chr8:127410053,chr8:127430039,chr8:127429150,chr8:127429150,chr8:127429278,chr8:127439310,chr8:127440324,chr8:127441845,chr8:127441946,chr8:127446804,chr8:127451167,chr8:127451167,chr8:127451196,chr8:127451225,chr8:127454359,chr8:127454359,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127455299,chr8:127456514,chr8:127456623,chr8:127456623,chr8:127456623,chr8:127456636,chr8:127456655,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456743,chr8:127456702,chr8:127456702,chr8:127456702,chr8:127456702,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456745,chr8:127456731,chr8:127456731,chr8:127456731,chr8:127456731,chr8:127456731,chr8:127456795,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456806,chr8:127456801,chr8:127456754,chr8:127456754,chr8:127456754,chr8:127456804,chr8:127454981,chr8:127454999,chr8:127454999,chr8:127455041,chr8:127455048,chr8:127455048,chr8:127455067,chr8:127455067,chr8:127455037,chr8:127455037,chr8:127455033,chr8:127455033,chr8:127455115,chr8:127457842,chr8:127462034,chr8:127461296,chr8:127461296,chr8:127461284,chr8:127461318,chr8:127461513,chr8:127471566,chr8:127471617,chr8:127471722,chr8:127471722,chr8:127471788,chr8:127471906,chr8:127471974,chr8:127471974,chr8:127472869,chr8:127474815,chr8:127477902,chr8:127477902,chr8:127477910,chr8:127477689,chr8:127478713,chr8:127477703,chr8:127477751,chr8:127481823,chr8:127384413,chr8:127385539,chr8:127385543,chr8:127385604,chr8:127329871,chr8:127331385,chr8:127461363,chr8:127429177,chr8:127430946,chr8:127385303,chr8:127384455,chr8:127385621,chr8:127385500,chr8:127384540,chr8:127409862,chr8:127385412,chr8:127384322,chr8:127384463,chr8:127385628,chr8:127446756,chr8:127384449,chr8:127441844,chr8:127456533,chr8:127385400,chr8:127456787,chr8:127385408,chr8:127456776,chr8:127455108,chr8:127386104,chr8:127454963,chr8:127456869,chr8:127329844,chr8:127463137,chr8:127373192,chr8:127385494,chr8:127451206,chr8:127384463,chr8:127451206,chr8:127451206,chr8:127478913,chr8:127471834,chr8:127461406,chr8:127478004,chr8:127478646,chr8:127471834,chr8:127461323,chr8:127477878,chr8:127429062,chr8:127478061,chr8:127429161,chr8:127441776,chr8:127461363,chr8:127441828,chr8:127461397,chr8:127471784,chr8:127461292,chr8:127471711,chr8:127477862,chr8:127292978,chr8:127471708,chr8:127292973,chr8:127471863,chr8:127441833,chr8:127429080,chr8:127461461,chr8:127461260,chr8:127441879,chr8:127429236,chr8:127343407,chr8:127429176,chr8:127461361,chr8:127477937,chr8:127441913,chr8:127461468,chr8:127471802,chr8:127429176,chr8:127461363,chr8:127471786,chr8:127461482,chr8:127441912,chr8:127461468,chr8:127461412,chr8:127473247,chr8:127441913,chr8:127429077,chr8:127461400,chr8:127461264,chr8:127429268,chr8:127384340,chr8:127385467,chr8:127384518,chr8:127393470,chr8:127355207,chr8:127393498,chr8:127355237,chr8:127455148,chr8:127393617,chr8:127456587,chr8:127393573,chr8:127393578,chr8:127393631,chr8:127455118,chr8:127478078,chr8:127296735,chr8:127393428,chr8:127393428,chr8:127456776,chr8:127477859,chr8:127477892,chr8:127393617,chr8:127393611,chr8:127456700,chr8:127355258,chr8:127393577,chr8:127394173,chr8:127457124,chr8:127393516,chr8:127477962,chr8:127384554,chr8:127385516,chr8:127455020,chr8:127383561,chr8:127385632,chr8:127385443,chr8:127455003,chr8:127296996,chr8:127384423,chr8:127384449,chr8:127471708,chr8:127292966,chr8:127429076,chr8:127329764,chr8:127331141,chr8:127429068,chr8:127329756,chr8:127456601,chr8:127384469,chr8:127386243,chr8:127384471,chr8:127384477,chr8:127393572,chr8:127296882,chr8:127393452,chr8:127393588,chr8:127393444,chr8:127456782,chr8:127296903,chr8:127455263,chr8:127393577,chr8:127456627,chr8:127393599,chr8:127456611,chr8:127456768,chr8:127393413,chr8:127456609,chr8:127456530,chr8:127456550,chr8:127296716,chr8:127393587,chr8:127393476,chr8:127456705,chr8:127455042,chr8:127355341,chr8:127355344,chr8:127355392,chr8:127461479,chr8:127456671,chr8:127456596,chr8:127471884,chr8:127384465,chr8:127384466,chr8:127385642,chr8:127456587,chr8:127461507,chr8:127461414,chr8:127456544,chr8:127461513,chr8:127471942,chr8:127385575,chr8:127456612,chr8:127471869,chr8:127456704,chr8:127471785,chr8:127384309,chr8:127384459,chr8:127384373,chr8:127295056,chr8:127429080,chr8:127429124,chr8:127351216,chr8:127429104,chr8:127429204,chr8:127385414,chr8:127429262,chr8:127351391,chr8:127385419,chr8:127429266,chr8:127325053,chr8:127325027,chr8:127384462,chr8:127374082,chr8:127384456,chr8:127384483,chr8:127441881,chr8:127456526,chr8:127456705,chr8:127457111,chr8:127478063,chr8:127471896,chr8:127356991,chr8:127384538,chr8:127329802,chr8:127384455,chr8:127384380,chr8:127393562,chr8:127393427,chr8:127438427,chr8:127325062,chr8:127382458,chr8:127325237,chr8:127340314,chr8:127461351,chr8:127456704,chr8:127471782,chr8:127456711,chr8:127471775,chr8:127456312,chr8:127456311,chr8:127454962,chr8:127461324,chr8:127456703,chr8:127471798,chr8:127461362,chr8:127471786,chr8:127461482,chr8:127373968,chr8:127292781,chr8:127292933,chr8:127294537,chr8:127294842,chr8:127296909,chr8:127303103,chr8:127456586,chr8:127456623,chr8:127456653,chr8:127456626,chr8:127456708,chr8:127456552,chr8:127456793,chr8:127436029,chr8:127456796,chr8:127456709,chr8:127456695,chr8:127456528,chr8:127456610,chr8:127456610,chr8:127456529,chr8:127361552,chr8:127456532,chr8:127456528,chr8:127456528,chr8:127456549,chr8:127329754,chr8:127329754,chr8:127329728,chr8:127329823,chr8:127331208,chr8:127331208,chr8:127329730,chr8:127329908,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344406,chr8:127344422,chr8:127344421,chr8:127344421,chr8:127344418,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344407,chr8:127344407,chr8:127344419,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127344422,chr8:127351767,chr8:127355173,chr8:127355296,chr8:127374065,chr8:127374070,chr8:127373265,chr8:127373492,chr8:127456585 NA NA 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128815870,chr8:128815914,chr8:128815985,chr8:128815995,chr8:128815995,chr8:128814256,chr8:128814366,chr8:128814340,chr8:128814404,chr8:128884435,chr8:128884619,chr8:128884619,chr8:128891577,chr8:128891613,chr8:128891732,chr8:128891732,chr8:128891686,chr8:128891684,chr8:128891714,chr8:128891714,chr8:128891714,chr8:128891769,chr8:128892594,chr8:128892594,chr8:128892594,chr8:128892627,chr8:128892627,chr8:128892627,chr8:128892698,chr8:128892698,chr8:128892779,chr8:128891157,chr8:128894290,chr8:128894675,chr8:128894789,chr8:128894832,chr8:128894864,chr8:128894821,chr8:128894903,chr8:128894983,chr8:128894983,chr8:128894983,chr8:128893952,chr8:128893952,chr8:128895265,chr8:128895332,chr8:128893785,chr8:128897466,chr8:128903352,chr8:128903051,chr8:128903051,chr8:128817194,chr8:128817327,chr8:128817416,chr8:128905588,chr8:128913525,chr8:128919168,chr8:128917840,chr8:128917840,chr8:128919359,chr8:128919509,chr8:128921956,chr8:128922282,chr8:128922514,chr8:128923124,chr8:128924840,chr8:128924840,chr8:128924840,chr8:128925603,chr8:128925268,chr8:128925268,chr8:128925314,chr8:128925314,chr8:128926382,chr8:128926383,chr8:128925326,chr8:128925326,chr8:128925388,chr8:128925388,chr8:128925395,chr8:128925395,chr8:128818685,chr8:128818698,chr8:128860711,chr8:128860781,chr8:128894127,chr8:128846683,chr8:128814584,chr8:128820242,chr8:128820063,chr8:128820082,chr8:128820110,chr8:128820148,chr8:128820186,chr8:128820303,chr8:128820559,chr8:128821015,chr8:128821001,chr8:128821090,chr8:128821108,chr8:128821127,chr8:128821182,chr8:128821178,chr8:128821275,chr8:128821236,chr8:128821265,chr8:128821284,chr8:128821285,chr8:128819571,chr8:128845775,chr8:128875421,chr8:128919448,chr8:128917818,chr8:128847045,chr8:128897863,chr8:128876055,chr8:128897812,chr8:128860884,chr8:128860844,chr8:128860859,chr8:128860890,chr8:128860891,chr8:128860856,chr8:128920713,chr8:128860858,chr8:128860878,chr8:128920847,chr8:128860903,chr8:128860840,chr8:128860841,chr8:128860842,chr8:128860842,chr8:128860842,chr8:128920713,chr8:128920711,chr8:128860843,chr8:128860579,chr8:128860847,chr8:128860844,chr8:128920713,chr8:128920712,chr8:128860857,chr8:128860862,chr8:128860835,chr8:128860877,chr8:128895014,chr8:128870408,chr8:128870599,chr8:128828307,chr8:128818608,chr8:128848646,chr8:128896975,chr8:128826090 chr8:128395624,chr8:128395624,chr8:128396437,chr8:128396542,chr8:128396589,chr8:128396536,chr8:128396635,chr8:128396635,chr8:128396635,chr8:128396631,chr8:128396650,chr8:128396650,chr8:128396650,chr8:128396650,chr8:128396650,chr8:128396691,chr8:128396691,chr8:128396691,chr8:128396691,chr8:128396691,chr8:128396681,chr8:128396683,chr8:128396757,chr8:128396692,chr8:128396764,chr8:128396764,chr8:128396799,chr8:128396799,chr8:128396839,chr8:128396885,chr8:128397328,chr8:128397328,chr8:128397328,chr8:128397328,chr8:128397328,chr8:128397328,chr8:128397293,chr8:128397293,chr8:128397464,chr8:128397464,chr8:128397592,chr8:128397744,chr8:128397744,chr8:128397744,chr8:128397735,chr8:128397747,chr8:128397747,chr8:128397901,chr8:128397901,chr8:128397901,chr8:128397901,chr8:128397901,chr8:128395203,chr8:128406064,chr8:128406064,chr8:128406509,chr8:128405588,chr8:128408755,chr8:128408755,chr8:128405758,chr8:128405694,chr8:128405862,chr8:128405744,chr8:128405769,chr8:128405763,chr8:128463485,chr8:128463444,chr8:128405854,chr8:128405821,chr8:128386335,chr8:128405823,chr8:128386336,chr8:128405705,chr8:128419181,chr8:128422298,chr8:128442284,chr8:128441395,chr8:128441395,chr8:128441523,chr8:128451555,chr8:128452569,chr8:128454090,chr8:128454191,chr8:128459049,chr8:128463412,chr8:128463412,chr8:128463441,chr8:128463470,chr8:128466604,chr8:128466604,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128467544,chr8:128468759,chr8:128468868,chr8:128468868,chr8:128468868,chr8:128468881,chr8:128468900,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468988,chr8:128468947,chr8:128468947,chr8:128468947,chr8:128468947,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468990,chr8:128468976,chr8:128468976,chr8:128468976,chr8:128468976,chr8:128468976,chr8:128469040,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469051,chr8:128469046,chr8:128468999,chr8:128468999,chr8:128468999,chr8:128469049,chr8:128467226,chr8:128467244,chr8:128467244,chr8:128467286,chr8:128467293,chr8:128467293,chr8:128467312,chr8:128467312,chr8:128467282,chr8:128467282,chr8:128467278,chr8:128467278,chr8:128467360,chr8:128470087,chr8:128474279,chr8:128473541,chr8:128473541,chr8:128473529,chr8:128473563,chr8:128473758,chr8:128483811,chr8:128483862,chr8:128483967,chr8:128483967,chr8:128484033,chr8:128484151,chr8:128484219,chr8:128484219,chr8:128485114,chr8:128487060,chr8:128490147,chr8:128490147,chr8:128490155,chr8:128489934,chr8:128490958,chr8:128489948,chr8:128489996,chr8:128494068,chr8:128396658,chr8:128397784,chr8:128397788,chr8:128397849,chr8:128342116,chr8:128343630,chr8:128473608,chr8:128441422,chr8:128443191,chr8:128397548,chr8:128396700,chr8:128397866,chr8:128397745,chr8:128396785,chr8:128422107,chr8:128397657,chr8:128396567,chr8:128396708,chr8:128397873,chr8:128459001,chr8:128396694,chr8:128454089,chr8:128468778,chr8:128397645,chr8:128469032,chr8:128397653,chr8:128469021,chr8:128467353,chr8:128398349,chr8:128467208,chr8:128469114,chr8:128342089,chr8:128475382,chr8:128385438,chr8:128397739,chr8:128463451,chr8:128396708,chr8:128463451,chr8:128463451,chr8:128491158,chr8:128484079,chr8:128473651,chr8:128490249,chr8:128490891,chr8:128484079,chr8:128473568,chr8:128490123,chr8:128441307,chr8:128490306,chr8:128441406,chr8:128454021,chr8:128473608,chr8:128454073,chr8:128473642,chr8:128484029,chr8:128473537,chr8:128483956,chr8:128490107,chr8:128305223,chr8:128483953,chr8:128305218,chr8:128484108,chr8:128454078,chr8:128441325,chr8:128473706,chr8:128473505,chr8:128454124,chr8:128441481,chr8:128355653,chr8:128441421,chr8:128473606,chr8:128490182,chr8:128454158,chr8:128473713,chr8:128484047,chr8:128441421,chr8:128473608,chr8:128484031,chr8:128473727,chr8:128454157,chr8:128473713,chr8:128473657,chr8:128485492,chr8:128454158,chr8:128441322,chr8:128473645,chr8:128473509,chr8:128441513,chr8:128396585,chr8:128397712,chr8:128396763,chr8:128405715,chr8:128367453,chr8:128405743,chr8:128367483,chr8:128467393,chr8:128405862,chr8:128468832,chr8:128405818,chr8:128405823,chr8:128405876,chr8:128467363,chr8:128490323,chr8:128308980,chr8:128405673,chr8:128405673,chr8:128469021,chr8:128490104,chr8:128490137,chr8:128405862,chr8:128405856,chr8:128468945,chr8:128367504,chr8:128405822,chr8:128406418,chr8:128469369,chr8:128405761,chr8:128490207,chr8:128396799,chr8:128397761,chr8:128467265,chr8:128395806,chr8:128397877,chr8:128397688,chr8:128467248,chr8:128309241,chr8:128396668,chr8:128396694,chr8:128483953,chr8:128305211,chr8:128441321,chr8:128342009,chr8:128343386,chr8:128441313,chr8:128342001,chr8:128468846,chr8:128396714,chr8:128398488,chr8:128396716,chr8:128396722,chr8:128405817,chr8:128309127,chr8:128405697,chr8:128405833,chr8:128405689,chr8:128469027,chr8:128309148,chr8:128467508,chr8:128405822,chr8:128468872,chr8:128405844,chr8:128468856,chr8:128469013,chr8:128405658,chr8:128468854,chr8:128468775,chr8:128468795,chr8:128308961,chr8:128405832,chr8:128405721,chr8:128468950,chr8:128467287,chr8:128367587,chr8:128367590,chr8:128367638,chr8:128473724,chr8:128468916,chr8:128468841,chr8:128484129,chr8:128396710,chr8:128396711,chr8:128397887,chr8:128468832,chr8:128473752,chr8:128473659,chr8:128468789,chr8:128473758,chr8:128484187,chr8:128397820,chr8:128468857,chr8:128484114,chr8:128468949,chr8:128484030,chr8:128396554,chr8:128396704,chr8:128396618,chr8:128307301,chr8:128441325,chr8:128441369,chr8:128363462,chr8:128441349,chr8:128441449,chr8:128397659,chr8:128441507,chr8:128363637,chr8:128397664,chr8:128441511,chr8:128337298,chr8:128337272,chr8:128396707,chr8:128386328,chr8:128396701,chr8:128396728,chr8:128454126,chr8:128468771,chr8:128468950,chr8:128469356,chr8:128490308,chr8:128484141,chr8:128369237,chr8:128396783,chr8:128342047,chr8:128396700,chr8:128396625,chr8:128405807,chr8:128405672,chr8:128450672,chr8:128337307,chr8:128394703,chr8:128337482,chr8:128352559,chr8:128473596,chr8:128468949,chr8:128484027,chr8:128468956,chr8:128484020,chr8:128468557,chr8:128468556,chr8:128467207,chr8:128473569,chr8:128468948,chr8:128484043,chr8:128473607,chr8:128484031,chr8:128473727,chr8:128386214,chr8:128305026,chr8:128305178,chr8:128306782,chr8:128307087,chr8:128309154,chr8:128315348,chr8:128468831,chr8:128468868,chr8:128468898,chr8:128468871,chr8:128468953,chr8:128468797,chr8:128469038,chr8:128448274,chr8:128469041,chr8:128468954,chr8:128468940,chr8:128468773,chr8:128468855,chr8:128468855,chr8:128468774,chr8:128373798,chr8:128468777,chr8:128468773,chr8:128468773,chr8:128468794,chr8:128341999,chr8:128341999,chr8:128341973,chr8:128342068,chr8:128343453,chr8:128343453,chr8:128341975,chr8:128342153,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356652,chr8:128356668,chr8:128356667,chr8:128356667,chr8:128356664,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356653,chr8:128356653,chr8:128356665,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128356668,chr8:128364013,chr8:128367419,chr8:128367542,chr8:128386311,chr8:128386316,chr8:128385511,chr8:128385738,chr8:128468830 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 5 4 50295 29 ENST00000651587.1 ENST00000523825.2 downstream downstream duplicates(4),mismatches(2) CGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTAAGTAATTAATTTTTGGGTGGCTGTTATGTAGCAGTAGATAATTG...TAaAAAACTGATACAAGGAATTAAGGACTCACGAAAACGGTGATCATTTATTTTTGGATCAGATTCTTTCCAAACATCGGATCCTTGGACAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25555 CASC8::PVT1 ENSG00000246228.7::ENSG00000249859.14 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127420829:- chr8:128302053-128494384:- chr8:128433074:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890589:+ chr8:128806772-129199347:+ chr8:128902835:+ chr8:127329485,chr8:127329512,chr8:127329757,chr8:127329766,chr8:127329774,chr8:127329774,chr8:127329782,chr8:127329782,chr8:127329809,chr8:127329813,chr8:127329815,chr8:127329815,chr8:127329826,chr8:127332079,chr8:127335514,chr8:127341713,chr8:127292933,chr8:127348352,chr8:127351363,chr8:127355179,chr8:127355280,chr8:127354639,chr8:127361330,chr8:127364613,chr8:127383479,chr8:127383479,chr8:127383479,chr8:127383479,chr8:127383500,chr8:127383811,chr8:127384324,chr8:127384461,chr8:127384465,chr8:127384465,chr8:127384465,chr8:127384465,chr8:127384543,chr8:127384543,chr8:127384543,chr8:127384543,chr8:127385586,chr8:127386050,chr8:127387817,chr8:127393547,chr8:127393560,chr8:127393560,chr8:127393560,chr8:127393569,chr8:127393569,chr8:127393569,chr8:127393575,chr8:127393575,chr8:127393575,chr8:127393492,chr8:127393492,chr8:127393513,chr8:127393513,chr8:127296754,chr8:127296754,chr8:127296754,chr8:127296796,chr8:127296960,chr8:127395433,chr8:127296757,chr8:127296720,chr8:127393620,chr8:127393544,chr8:127296795,chr8:127393548,chr8:127393549,chr8:127393600,chr8:127374079,chr8:127374079,chr8:127303069,chr8:127393435,chr8:127393589,chr8:127393541,chr8:127393434,chr8:127393501,chr8:127393422,chr8:127393434,chr8:127393425,chr8:127393423,chr8:127373276,chr8:127393568,chr8:127385399,chr8:127385544,chr8:127384291,chr8:127385414,chr8:127329601,chr8:127329742,chr8:127385566,chr8:127386276,chr8:127382924,chr8:127384436,chr8:127385585,chr8:127384444,chr8:127329757,chr8:127329757,chr8:127329763,chr8:127385614,chr8:127384448,chr8:127384444,chr8:127393398,chr8:127393472,chr8:127393510,chr8:127393539,chr8:127354673,chr8:127393590,chr8:127355210,chr8:127355299,chr8:127393557,chr8:127355280,chr8:127296781,chr8:127393390,chr8:127393409,chr8:127385389,chr8:127329592,chr8:127329592,chr8:127292926,chr8:127384516,chr8:127355240,chr8:127351081,chr8:127385597,chr8:127385566,chr8:127351238,chr8:127385606,chr8:127293513,chr8:127384472,chr8:127351303,chr8:127351287,chr8:127385477,chr8:127351208,chr8:127351375,chr8:127329744,chr8:127329689,chr8:127374057,chr8:127329733 chr8:127832682,chr8:127862399,chr8:127863180,chr8:127863177,chr8:127833510,chr8:127863163,chr8:127833502,chr8:127863155,chr8:127862396,chr8:127833491,chr8:127833491,chr8:127863144,chr8:127862398,chr8:127834165,chr8:127869971,chr8:127837960,chr8:127863274,chr8:127885994,chr8:127881952,chr8:127871849,chr8:127871896,chr8:127872357,chr8:127808295,chr8:127882698,chr8:127801356,chr8:127821696,chr8:127827110,chr8:127881571,chr8:127879630,chr8:127882727,chr8:127860524,chr8:127879505,chr8:127827083,chr8:127837986,chr8:127869891,chr8:127881549,chr8:127821806,chr8:127827006,chr8:127837908,chr8:127882494,chr8:127821713,chr8:127879561,chr8:127886053,chr8:127801980,chr8:127802036,chr8:127815086,chr8:127856462,chr8:127802027,chr8:127815077,chr8:127856457,chr8:127802021,chr8:127815071,chr8:127856447,chr8:127802117,chr8:127815169,chr8:127801993,chr8:127856415,chr8:127889321,chr8:127802106,chr8:127857030,chr8:127802321,chr8:127856993,chr8:127872321,chr8:127801467,chr8:127801938,chr8:127801938,chr8:127801961,chr8:127802016,chr8:127802016,chr8:127802047,chr8:127802300,chr8:127806352,chr8:127806358,chr8:127809129,chr8:127815047,chr8:127815061,chr8:127815118,chr8:127815150,chr8:127815186,chr8:127815212,chr8:127815220,chr8:127815222,chr8:127815224,chr8:127815590,chr8:127814888,chr8:127821736,chr8:127821755,chr8:127821528,chr8:127821556,chr8:127821584,chr8:127821610,chr8:127827238,chr8:127826943,chr8:127828383,chr8:127829220,chr8:127829253,chr8:127829162,chr8:127833538,chr8:127833544,chr8:127833549,chr8:127837918,chr8:127837993,chr8:127837999,chr8:127857017,chr8:127857083,chr8:127857094,chr8:127857122,chr8:127857322,chr8:127856370,chr8:127857498,chr8:127857523,chr8:127857523,chr8:127856406,chr8:127856455,chr8:127856545,chr8:127856612,chr8:127860484,chr8:127862227,chr8:127862233,chr8:127862165,chr8:127869840,chr8:127871796,chr8:127881761,chr8:127881806,chr8:127881845,chr8:127881886,chr8:127881956,chr8:127882374,chr8:127882730,chr8:127882731,chr8:127882786,chr8:127882786,chr8:127881528,chr8:127881633,chr8:127884517,chr8:127884648,chr8:127884648,chr8:127886111 NA NA chr8:128341730,chr8:128341757,chr8:128342002,chr8:128342011,chr8:128342019,chr8:128342019,chr8:128342027,chr8:128342027,chr8:128342054,chr8:128342058,chr8:128342060,chr8:128342060,chr8:128342071,chr8:128344324,chr8:128347759,chr8:128353959,chr8:128305178,chr8:128360598,chr8:128363609,chr8:128367425,chr8:128367526,chr8:128366885,chr8:128373576,chr8:128376859,chr8:128395724,chr8:128395724,chr8:128395724,chr8:128395724,chr8:128395745,chr8:128396056,chr8:128396569,chr8:128396706,chr8:128396710,chr8:128396710,chr8:128396710,chr8:128396710,chr8:128396788,chr8:128396788,chr8:128396788,chr8:128396788,chr8:128397831,chr8:128398295,chr8:128400062,chr8:128405792,chr8:128405805,chr8:128405805,chr8:128405805,chr8:128405814,chr8:128405814,chr8:128405814,chr8:128405820,chr8:128405820,chr8:128405820,chr8:128405737,chr8:128405737,chr8:128405758,chr8:128405758,chr8:128308999,chr8:128308999,chr8:128308999,chr8:128309041,chr8:128309205,chr8:128407678,chr8:128309002,chr8:128308965,chr8:128405865,chr8:128405789,chr8:128309040,chr8:128405793,chr8:128405794,chr8:128405845,chr8:128386325,chr8:128386325,chr8:128315314,chr8:128405680,chr8:128405834,chr8:128405786,chr8:128405679,chr8:128405746,chr8:128405667,chr8:128405679,chr8:128405670,chr8:128405668,chr8:128385522,chr8:128405813,chr8:128397644,chr8:128397789,chr8:128396536,chr8:128397659,chr8:128341846,chr8:128341987,chr8:128397811,chr8:128398521,chr8:128395169,chr8:128396681,chr8:128397830,chr8:128396689,chr8:128342002,chr8:128342002,chr8:128342008,chr8:128397859,chr8:128396693,chr8:128396689,chr8:128405643,chr8:128405717,chr8:128405755,chr8:128405784,chr8:128366919,chr8:128405835,chr8:128367456,chr8:128367545,chr8:128405802,chr8:128367526,chr8:128309026,chr8:128405635,chr8:128405654,chr8:128397634,chr8:128341837,chr8:128341837,chr8:128305171,chr8:128396761,chr8:128367486,chr8:128363327,chr8:128397842,chr8:128397811,chr8:128363484,chr8:128397851,chr8:128305758,chr8:128396717,chr8:128363549,chr8:128363533,chr8:128397722,chr8:128363454,chr8:128363621,chr8:128341989,chr8:128341934,chr8:128386303,chr8:128341978 chr8:128844928,chr8:128874645,chr8:128875426,chr8:128875423,chr8:128845756,chr8:128875409,chr8:128845748,chr8:128875401,chr8:128874642,chr8:128845737,chr8:128845737,chr8:128875390,chr8:128874644,chr8:128846411,chr8:128882217,chr8:128850206,chr8:128875520,chr8:128898240,chr8:128894198,chr8:128884095,chr8:128884142,chr8:128884603,chr8:128820541,chr8:128894944,chr8:128813602,chr8:128833942,chr8:128839356,chr8:128893817,chr8:128891876,chr8:128894973,chr8:128872770,chr8:128891751,chr8:128839329,chr8:128850232,chr8:128882137,chr8:128893795,chr8:128834052,chr8:128839252,chr8:128850154,chr8:128894740,chr8:128833959,chr8:128891807,chr8:128898299,chr8:128814226,chr8:128814282,chr8:128827332,chr8:128868708,chr8:128814273,chr8:128827323,chr8:128868703,chr8:128814267,chr8:128827317,chr8:128868693,chr8:128814363,chr8:128827415,chr8:128814239,chr8:128868661,chr8:128901567,chr8:128814352,chr8:128869276,chr8:128814567,chr8:128869239,chr8:128884567,chr8:128813713,chr8:128814184,chr8:128814184,chr8:128814207,chr8:128814262,chr8:128814262,chr8:128814293,chr8:128814546,chr8:128818598,chr8:128818604,chr8:128821375,chr8:128827293,chr8:128827307,chr8:128827364,chr8:128827396,chr8:128827432,chr8:128827458,chr8:128827466,chr8:128827468,chr8:128827470,chr8:128827836,chr8:128827134,chr8:128833982,chr8:128834001,chr8:128833774,chr8:128833802,chr8:128833830,chr8:128833856,chr8:128839484,chr8:128839189,chr8:128840629,chr8:128841466,chr8:128841499,chr8:128841408,chr8:128845784,chr8:128845790,chr8:128845795,chr8:128850164,chr8:128850239,chr8:128850245,chr8:128869263,chr8:128869329,chr8:128869340,chr8:128869368,chr8:128869568,chr8:128868616,chr8:128869744,chr8:128869769,chr8:128869769,chr8:128868652,chr8:128868701,chr8:128868791,chr8:128868858,chr8:128872730,chr8:128874473,chr8:128874479,chr8:128874411,chr8:128882086,chr8:128884042,chr8:128894007,chr8:128894052,chr8:128894091,chr8:128894132,chr8:128894202,chr8:128894620,chr8:128894976,chr8:128894977,chr8:128895032,chr8:128895032,chr8:128893774,chr8:128893879,chr8:128896763,chr8:128896894,chr8:128896894,chr8:128898357 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 1 24 11880 ENST00000502082.5 ENST00000651587.1 upstream upstream duplicates(2) CTTTGTGCTGATGAACATGGTCACCTTGAAAGGTGTGTTGAATATGGCAGAGCCAGAAAATGCAAGGAGCTTCTTCTCTGGATCACCACTTGAAGAAGAGCCACTTGCTCCTCAGGAACCCTATTTTGGACTGAC|GCCTGATCTTTTGGCCAGAAGGAGATTAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25556 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126067461:- chr8:126871965-127305033:- chr8:127079705:- chr8:125979812,chr8:125954584,chr8:125954437,chr8:125954182,chr8:125963892,chr8:125963344,chr8:125972644,chr8:125972916,chr8:125978809,chr8:125978843,chr8:125979609,chr8:125979740,chr8:125979740,chr8:125979965,chr8:125979999,chr8:125987384,chr8:125987371,chr8:125987425,chr8:125987466,chr8:125987477,chr8:125989609,chr8:125990141,chr8:125989611,chr8:125989611,chr8:125989578,chr8:125993015,chr8:125994113,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000787,chr8:126000787,chr8:126000900,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126001666,chr8:126002228,chr8:126002228,chr8:125999263,chr8:125997863,chr8:125999651,chr8:125944896,chr8:126005303,chr8:126005484,chr8:126000949,chr8:125999167,chr8:125975913,chr8:125975914,chr8:125975915,chr8:125975916,chr8:125975917,chr8:125975918,chr8:125975919,chr8:125975920,chr8:125975921,chr8:125975922,chr8:125975923,chr8:125975924,chr8:125975925,chr8:125975926,chr8:125975926,chr8:125975927,chr8:125975928,chr8:125975929,chr8:125975929,chr8:125975930,chr8:125975931,chr8:125975932,chr8:125975933,chr8:125975934,chr8:125975935,chr8:125975936,chr8:125975930,chr8:125975937,chr8:125975938,chr8:125975939,chr8:125975940,chr8:125975941,chr8:125975942,chr8:125975943,chr8:125975944,chr8:125975945,chr8:125975946,chr8:125975948,chr8:125975950,chr8:125975951,chr8:125975952,chr8:125975953,chr8:125975954,chr8:125975955,chr8:125975956,chr8:125975957,chr8:125975958,chr8:125975959,chr8:125975960,chr8:125975961,chr8:125975965,chr8:125975966,chr8:125975968,chr8:125975967,chr8:125975969,chr8:125975970,chr8:125975971,chr8:125975972,chr8:125975973,chr8:125975974,chr8:125975976,chr8:125975979,chr8:125975980,chr8:125975981,chr8:125975982,chr8:125975983,chr8:125975984,chr8:125975985,chr8:126000768,chr8:126000841,chr8:125948606,chr8:125954564,chr8:125954582,chr8:125954655,chr8:125954928,chr8:125954965,chr8:125954950,chr8:125948864,chr8:125954965,chr8:125948861,chr8:126005330,chr8:125955062,chr8:126005464,chr8:125955166,chr8:125955516,chr8:125954037,chr8:125973058,chr8:126000891,chr8:126000907,chr8:126000739,chr8:126000953,chr8:125947793,chr8:125950610,chr8:125951031,chr8:125948007,chr8:125948637,chr8:125948664,chr8:125948664,chr8:125948765,chr8:125948775,chr8:125948877,chr8:125948877,chr8:125949763,chr8:125970380,chr8:125987532,chr8:126008830,chr8:126000824,chr8:126000880,chr8:126000893,chr8:126000945,chr8:125987173,chr8:125954207,chr8:125954597,chr8:125954556,chr8:125960121,chr8:125979923,chr8:125979606,chr8:125987441,chr8:126000841,chr8:125978882,chr8:125987530,chr8:125987427,chr8:125987388,chr8:125987413,chr8:125987507,chr8:125987454,chr8:125987454,chr8:125960223,chr8:125972754,chr8:125947986,chr8:125978838,chr8:125954543,chr8:125954553,chr8:125954592,chr8:125954650,chr8:125954818,chr8:125955000,chr8:125955016,chr8:125955182,chr8:125955257,chr8:125955329,chr8:125955345,chr8:125955373,chr8:125955429,chr8:125955503,chr8:126000751,chr8:126000754,chr8:126000763,chr8:126000852,chr8:125999714,chr8:126000764,chr8:126009398,chr8:125984970,chr8:125949549,chr8:125948890,chr8:125960759,chr8:125951298,chr8:126000835,chr8:125958357,chr8:125961498,chr8:125948754,chr8:125948883,chr8:125970460,chr8:125962047 chr8:126252719,chr8:126259942,chr8:126259919,chr8:126265826,chr8:126269242,chr8:126237931,chr8:126265923,chr8:126107198,chr8:126155318,chr8:126155285,chr8:126241893,chr8:126108317,chr8:126195030,chr8:126155091,chr8:126155207,chr8:126155392,chr8:126155411,chr8:126155361,chr8:126155314,chr8:126155309,chr8:126241996,chr8:126242011,chr8:126267502,chr8:126241953,chr8:126241989,chr8:126268043,chr8:126193878,chr8:126128616,chr8:126155467,chr8:126226079,chr8:126172139,chr8:126225966,chr8:126172242,chr8:126086022,chr8:126155351,chr8:126225964,chr8:126253711,chr8:126074283,chr8:126172264,chr8:126154630,chr8:126245818,chr8:126154858,chr8:126125684,chr8:126108224,chr8:126108402,chr8:126074686,chr8:126074510,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083618,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083609,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083623,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126083630,chr8:126086090,chr8:126085852,chr8:126089065,chr8:126107709,chr8:126107765,chr8:126107839,chr8:126108114,chr8:126108100,chr8:126108129,chr8:126106950,chr8:126108169,chr8:126106992,chr8:126108252,chr8:126108252,chr8:126108305,chr8:126108420,chr8:126108595,chr8:126108722,chr8:126107102,chr8:126118841,chr8:126118868,chr8:126118564,chr8:126118538,chr8:126241761,chr8:126108177,chr8:126245409,chr8:126107194,chr8:126241924,chr8:126107166,chr8:126241788,chr8:126241790,chr8:126107184,chr8:126107124,chr8:126241997,chr8:126095079,chr8:126121690,chr8:126121690,chr8:126126967,chr8:126128548,chr8:126128735,chr8:126128725,chr8:126128751,chr8:126130246,chr8:126146248,chr8:126145860,chr8:126145891,chr8:126154299,chr8:126154730,chr8:126154954,chr8:126155211,chr8:126155211,chr8:126155241,chr8:126155241,chr8:126155359,chr8:126155402,chr8:126155373,chr8:126155378,chr8:126155432,chr8:126155474,chr8:126153895,chr8:126157152,chr8:126163190,chr8:126163890,chr8:126107735,chr8:126145879,chr8:126107808,chr8:126145894,chr8:126108028,chr8:126108110,chr8:126108126,chr8:126108297,chr8:126108436,chr8:126108514,chr8:126108522,chr8:126108520,chr8:126108657,chr8:126108668,chr8:126172222,chr8:126172222,chr8:126172213,chr8:126172241,chr8:126172263,chr8:126172273,chr8:126185097,chr8:126192460,chr8:126193202,chr8:126193285,chr8:126209917,chr8:126224476,chr8:126226046,chr8:126210310,chr8:126155365,chr8:126241844,chr8:126241967,chr8:126244748,chr8:126230537 NA NA chr8:126992056,chr8:126966828,chr8:126966681,chr8:126966426,chr8:126976136,chr8:126975588,chr8:126984888,chr8:126985160,chr8:126991053,chr8:126991087,chr8:126991853,chr8:126991984,chr8:126991984,chr8:126992209,chr8:126992243,chr8:126999628,chr8:126999615,chr8:126999669,chr8:126999710,chr8:126999721,chr8:127001853,chr8:127002385,chr8:127001855,chr8:127001855,chr8:127001822,chr8:127005259,chr8:127006357,chr8:127012964,chr8:127012964,chr8:127012964,chr8:127013031,chr8:127013031,chr8:127013144,chr8:127013188,chr8:127013188,chr8:127013188,chr8:127013910,chr8:127014472,chr8:127014472,chr8:127011507,chr8:127010107,chr8:127011895,chr8:126957140,chr8:127017547,chr8:127017728,chr8:127013193,chr8:127011411,chr8:126988157,chr8:126988158,chr8:126988159,chr8:126988160,chr8:126988161,chr8:126988162,chr8:126988163,chr8:126988164,chr8:126988165,chr8:126988166,chr8:126988167,chr8:126988168,chr8:126988169,chr8:126988170,chr8:126988170,chr8:126988171,chr8:126988172,chr8:126988173,chr8:126988173,chr8:126988174,chr8:126988175,chr8:126988176,chr8:126988177,chr8:126988178,chr8:126988179,chr8:126988180,chr8:126988174,chr8:126988181,chr8:126988182,chr8:126988183,chr8:126988184,chr8:126988185,chr8:126988186,chr8:126988187,chr8:126988188,chr8:126988189,chr8:126988190,chr8:126988192,chr8:126988194,chr8:126988195,chr8:126988196,chr8:126988197,chr8:126988198,chr8:126988199,chr8:126988200,chr8:126988201,chr8:126988202,chr8:126988203,chr8:126988204,chr8:126988205,chr8:126988209,chr8:126988210,chr8:126988212,chr8:126988211,chr8:126988213,chr8:126988214,chr8:126988215,chr8:126988216,chr8:126988217,chr8:126988218,chr8:126988220,chr8:126988223,chr8:126988224,chr8:126988225,chr8:126988226,chr8:126988227,chr8:126988228,chr8:126988229,chr8:127013012,chr8:127013085,chr8:126960850,chr8:126966808,chr8:126966826,chr8:126966899,chr8:126967172,chr8:126967209,chr8:126967194,chr8:126961108,chr8:126967209,chr8:126961105,chr8:127017574,chr8:126967306,chr8:127017708,chr8:126967410,chr8:126967760,chr8:126966281,chr8:126985302,chr8:127013135,chr8:127013151,chr8:127012983,chr8:127013197,chr8:126960037,chr8:126962854,chr8:126963275,chr8:126960251,chr8:126960881,chr8:126960908,chr8:126960908,chr8:126961009,chr8:126961019,chr8:126961121,chr8:126961121,chr8:126962007,chr8:126982624,chr8:126999776,chr8:127021074,chr8:127013068,chr8:127013124,chr8:127013137,chr8:127013189,chr8:126999417,chr8:126966451,chr8:126966841,chr8:126966800,chr8:126972365,chr8:126992167,chr8:126991850,chr8:126999685,chr8:127013085,chr8:126991126,chr8:126999774,chr8:126999671,chr8:126999632,chr8:126999657,chr8:126999751,chr8:126999698,chr8:126999698,chr8:126972467,chr8:126984998,chr8:126960230,chr8:126991082,chr8:126966787,chr8:126966797,chr8:126966836,chr8:126966894,chr8:126967062,chr8:126967244,chr8:126967260,chr8:126967426,chr8:126967501,chr8:126967573,chr8:126967589,chr8:126967617,chr8:126967673,chr8:126967747,chr8:127012995,chr8:127012998,chr8:127013007,chr8:127013096,chr8:127011958,chr8:127013008,chr8:127021642,chr8:126997214,chr8:126961793,chr8:126961134,chr8:126973003,chr8:126963542,chr8:127013079,chr8:126970601,chr8:126973742,chr8:126960998,chr8:126961127,chr8:126982704,chr8:126974291 chr8:127264964,chr8:127272187,chr8:127272164,chr8:127278071,chr8:127281487,chr8:127250175,chr8:127278168,chr8:127119442,chr8:127167562,chr8:127167529,chr8:127254137,chr8:127120561,chr8:127207274,chr8:127167335,chr8:127167451,chr8:127167636,chr8:127167655,chr8:127167605,chr8:127167558,chr8:127167553,chr8:127254240,chr8:127254255,chr8:127279747,chr8:127254197,chr8:127254233,chr8:127280288,chr8:127206122,chr8:127140860,chr8:127167711,chr8:127238323,chr8:127184383,chr8:127238210,chr8:127184486,chr8:127098266,chr8:127167595,chr8:127238208,chr8:127265956,chr8:127086527,chr8:127184508,chr8:127166874,chr8:127258063,chr8:127167102,chr8:127137928,chr8:127120468,chr8:127120646,chr8:127086930,chr8:127086754,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095862,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095853,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095867,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127098334,chr8:127098096,chr8:127101309,chr8:127119953,chr8:127120009,chr8:127120083,chr8:127120358,chr8:127120344,chr8:127120373,chr8:127119194,chr8:127120413,chr8:127119236,chr8:127120496,chr8:127120496,chr8:127120549,chr8:127120664,chr8:127120839,chr8:127120966,chr8:127119346,chr8:127131085,chr8:127131112,chr8:127130808,chr8:127130782,chr8:127254005,chr8:127120421,chr8:127257654,chr8:127119438,chr8:127254168,chr8:127119410,chr8:127254032,chr8:127254034,chr8:127119428,chr8:127119368,chr8:127254241,chr8:127107323,chr8:127133934,chr8:127133934,chr8:127139211,chr8:127140792,chr8:127140979,chr8:127140969,chr8:127140995,chr8:127142490,chr8:127158492,chr8:127158104,chr8:127158135,chr8:127166543,chr8:127166974,chr8:127167198,chr8:127167455,chr8:127167455,chr8:127167485,chr8:127167485,chr8:127167603,chr8:127167646,chr8:127167617,chr8:127167622,chr8:127167676,chr8:127167718,chr8:127166139,chr8:127169396,chr8:127175434,chr8:127176134,chr8:127119979,chr8:127158123,chr8:127120052,chr8:127158138,chr8:127120272,chr8:127120354,chr8:127120370,chr8:127120541,chr8:127120680,chr8:127120758,chr8:127120766,chr8:127120764,chr8:127120901,chr8:127120912,chr8:127184466,chr8:127184466,chr8:127184457,chr8:127184485,chr8:127184507,chr8:127184517,chr8:127197341,chr8:127204704,chr8:127205446,chr8:127205529,chr8:127222161,chr8:127236720,chr8:127238290,chr8:127222554,chr8:127167609,chr8:127254088,chr8:127254211,chr8:127256993,chr8:127242781 NA NA sense sense unknown exon/splice-site intron inversion high none none none 108 279 288 6490 1536 ENST00000651999.1 unknown downstream downstream duplicates(217),mismatches(12),multimappers(12) CTGACAGTCCCGCGTTGCCCTCAATCTGAAG___...AAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|TTCAGGTGTTCCTCAAGTCCCTGAAGACAGAGAGAATTGCTCCCTCTCACTAATATGTGGGCTGAGAGTATTTTAAATGGCTGGAGTTTGGAGGAGGCACTGAAACAGTAACGTCTGACTCCTATTTCACTCAATTTTTGACAAGACTTGGGATGAGAATGAAGAAGAGTGATAACAATTGAAGAGAATTTTATTCGCTTTCATTCTTTCACAGACACCTGCCCCAATAGCACACACCCCAAATGGACAAAGTTCAGCTCTGCTGAAGCCGGCACATTAAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25557 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125725888:+ chr8:126660571-127021174:+ chr8:126738132:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126113081:- chr8:126871965-127305033:- chr8:127125325:- chr8:125907307,chr8:125906515,chr8:125908621,chr8:125918646,chr8:125918845,chr8:125919028,chr8:125918523,chr8:125921624,chr8:125938436,chr8:125940261,chr8:125944896,chr8:125947793,chr8:125948015,chr8:125948007,chr8:125948637,chr8:125948664,chr8:125948765,chr8:125948747,chr8:125948877,chr8:125948877,chr8:125950610,chr8:125954553,chr8:125954650,chr8:125961498,chr8:125750672,chr8:125972644,chr8:125972916,chr8:125973276,chr8:125978788,chr8:125978788,chr8:125978809,chr8:125978843,chr8:125979509,chr8:125979609,chr8:125979740,chr8:125979965,chr8:125979999,chr8:125751471,chr8:125751471,chr8:125751477,chr8:125751456,chr8:125751535,chr8:125751626,chr8:125751626,chr8:125752083,chr8:125752083,chr8:125987384,chr8:125987371,chr8:125987425,chr8:125987466,chr8:125987477,chr8:125989609,chr8:125989609,chr8:125990141,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989578,chr8:125989578,chr8:125994113,chr8:125999263,chr8:125999263,chr8:125997863,chr8:125999651,chr8:126008149,chr8:126008291,chr8:126000727,chr8:126000731,chr8:126000730,chr8:126000728,chr8:126000953,chr8:125905451,chr8:126000891,chr8:126000907,chr8:125754054,chr8:125970307,chr8:125873188,chr8:125859617,chr8:125970380,chr8:125987532,chr8:125873128,chr8:125859684,chr8:125970627,chr8:125803295,chr8:125742907,chr8:125970885,chr8:125954726,chr8:125891606,chr8:125891460,chr8:125954808,chr8:125840689,chr8:125891608,chr8:125791174,chr8:125791725,chr8:125791320,chr8:126008830,chr8:125987173,chr8:125895209,chr8:125895357,chr8:125895201,chr8:125938573,chr8:125954207,chr8:125954597,chr8:125954556,chr8:125841179,chr8:125841469,chr8:125757182,chr8:125757182,chr8:125960121,chr8:125979923,chr8:125979606,chr8:125987441,chr8:125978882,chr8:125987530,chr8:125832687,chr8:125832686,chr8:125832659,chr8:125987427,chr8:125987388,chr8:125987413,chr8:125987507,chr8:125987454,chr8:125987454,chr8:125960223,chr8:125972754,chr8:125820893,chr8:125963085,chr8:125951748,chr8:125978838,chr8:125978682,chr8:125850563,chr8:125888344,chr8:125918694,chr8:125918680,chr8:125918718,chr8:125918718,chr8:125918755,chr8:125918801,chr8:125918871,chr8:125918871,chr8:125999714,chr8:125918860,chr8:125998475,chr8:125728661,chr8:125761680,chr8:125760646,chr8:125832665,chr8:125936769,chr8:125984970,chr8:125920671,chr8:125978919,chr8:125850275,chr8:125895334,chr8:125837473,chr8:125850027,chr8:125762724,chr8:125726694,chr8:125871477,chr8:125892179,chr8:125840672,chr8:125960759,chr8:125981223,chr8:125761121,chr8:125998506,chr8:125895071,chr8:125938759,chr8:125979808,chr8:125774033,chr8:125788320,chr8:125947944,chr8:125837360,chr8:125851267,chr8:125895299,chr8:125978797,chr8:125788450,chr8:125895210,chr8:125850387,chr8:125999911,chr8:125895322,chr8:125978824,chr8:125978796,chr8:125788572,chr8:125948788,chr8:125788432,chr8:125895189,chr8:125936770,chr8:125978682,chr8:125907112,chr8:125788327,chr8:125895083,chr8:125851631,chr8:126001785,chr8:126000835,chr8:125859576,chr8:125859508,chr8:125842814,chr8:125842770,chr8:125842711,chr8:125752238,chr8:125751750,chr8:125751572,chr8:125835596,chr8:125948754,chr8:125948883,chr8:125745602,chr8:125970460,chr8:125766739,chr8:125979812,chr8:125774889,chr8:125954584,chr8:125953975,chr8:125954650,chr8:125954437,chr8:125954182,chr8:125832602,chr8:125895202,chr8:125895129,chr8:125758031,chr8:125898095,chr8:125963892,chr8:125842833,chr8:125842721,chr8:125870101,chr8:125850457,chr8:125850432,chr8:125814124,chr8:125814321,chr8:125814455,chr8:125814488,chr8:125875173,chr8:125813640,chr8:125813640,chr8:125848771,chr8:125774826,chr8:125777580,chr8:125777675,chr8:125777675,chr8:125782183,chr8:125788327,chr8:125788460,chr8:125788451,chr8:125788489,chr8:125791506,chr8:125791546,chr8:125790483,chr8:125792989,chr8:125793404,chr8:125793404,chr8:125793882,chr8:125794732,chr8:125796657,chr8:125796813,chr8:125797249,chr8:125803136,chr8:125803318,chr8:125803837,chr8:125802824,chr8:125803948,chr8:125803948,chr8:125803964,chr8:125806771,chr8:125813919,chr8:125813916,chr8:125813910,chr8:125814205,chr8:125814270,chr8:125832968,chr8:125833610,chr8:125832572,chr8:125834036,chr8:125832577,chr8:125832604,chr8:125832664,chr8:125832633,chr8:125832658,chr8:125832658,chr8:125832670,chr8:125832670,chr8:125832766,chr8:125832759,chr8:125832883,chr8:125835370,chr8:125837215,chr8:125837215,chr8:125837516,chr8:125841429,chr8:125841509,chr8:125841509,chr8:125841570,chr8:125842751,chr8:125842751,chr8:125842871,chr8:125843661,chr8:125842646,chr8:125842682,chr8:125842672,chr8:125842709,chr8:125842754,chr8:125842726,chr8:125850134,chr8:125850134,chr8:125850231,chr8:125850324,chr8:125850488,chr8:125851021,chr8:125850035,chr8:125850063,chr8:125850107,chr8:125850134,chr8:125859505,chr8:125860981,chr8:125862908,chr8:125867052,chr8:125867926,chr8:125869220,chr8:125737496,chr8:125871516,chr8:125873256,chr8:125873575,chr8:125874745,chr8:125874878,chr8:125888572,chr8:125888737,chr8:125890587,chr8:125891508,chr8:125891574,chr8:125891662,chr8:125896817,chr8:125897098,chr8:125897131,chr8:125897131,chr8:125895124,chr8:125895155,chr8:125895155,chr8:125895261,chr8:125895243,chr8:125895229,chr8:125895254,chr8:125895590,chr8:125895928,chr8:125895928,chr8:125895928,chr8:125899910,chr8:125899893,chr8:125899298 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NA NA chr8:126919551,chr8:126918759,chr8:126920865,chr8:126930890,chr8:126931089,chr8:126931272,chr8:126930767,chr8:126933868,chr8:126950680,chr8:126952505,chr8:126957140,chr8:126960037,chr8:126960259,chr8:126960251,chr8:126960881,chr8:126960908,chr8:126961009,chr8:126960991,chr8:126961121,chr8:126961121,chr8:126962854,chr8:126966797,chr8:126966894,chr8:126973742,chr8:126762916,chr8:126984888,chr8:126985160,chr8:126985520,chr8:126991032,chr8:126991032,chr8:126991053,chr8:126991087,chr8:126991753,chr8:126991853,chr8:126991984,chr8:126992209,chr8:126992243,chr8:126763715,chr8:126763715,chr8:126763721,chr8:126763700,chr8:126763779,chr8:126763870,chr8:126763870,chr8:126764327,chr8:126764327,chr8:126999628,chr8:126999615,chr8:126999669,chr8:126999710,chr8:126999721,chr8:127001853,chr8:127001853,chr8:127002385,chr8:127001855,chr8:127001855,chr8:127001855,chr8:127001822,chr8:127001822,chr8:127006357,chr8:127011507,chr8:127011507,chr8:127010107,chr8:127011895,chr8:127020393,chr8:127020535,chr8:127012971,chr8:127012975,chr8:127012974,chr8:127012972,chr8:127013197,chr8:126917695,chr8:127013135,chr8:127013151,chr8:126766298,chr8:126982551,chr8:126885432,chr8:126871861,chr8:126982624,chr8:126999776,chr8:126885372,chr8:126871928,chr8:126982871,chr8:126815539,chr8:126755151,chr8:126983129,chr8:126966970,chr8:126903850,chr8:126903704,chr8:126967052,chr8:126852933,chr8:126903852,chr8:126803418,chr8:126803969,chr8:126803564,chr8:127021074,chr8:126999417,chr8:126907453,chr8:126907601,chr8:126907445,chr8:126950817,chr8:126966451,chr8:126966841,chr8:126966800,chr8:126853423,chr8:126853713,chr8:126769426,chr8:126769426,chr8:126972365,chr8:126992167,chr8:126991850,chr8:126999685,chr8:126991126,chr8:126999774,chr8:126844931,chr8:126844930,chr8:126844903,chr8:126999671,chr8:126999632,chr8:126999657,chr8:126999751,chr8:126999698,chr8:126999698,chr8:126972467,chr8:126984998,chr8:126833137,chr8:126975329,chr8:126963992,chr8:126991082,chr8:126990926,chr8:126862807,chr8:126900588,chr8:126930938,chr8:126930924,chr8:126930962,chr8:126930962,chr8:126930999,chr8:126931045,chr8:126931115,chr8:126931115,chr8:127011958,chr8:126931104,chr8:127010719,chr8:126740905,chr8:126773924,chr8:126772890,chr8:126844909,chr8:126949013,chr8:126997214,chr8:126932915,chr8:126991163,chr8:126862519,chr8:126907578,chr8:126849717,chr8:126862271,chr8:126774968,chr8:126738938,chr8:126883721,chr8:126904423,chr8:126852916,chr8:126973003,chr8:126993467,chr8:126773365,chr8:127010750,chr8:126907315,chr8:126951003,chr8:126992052,chr8:126786277,chr8:126800564,chr8:126960188,chr8:126849604,chr8:126863511,chr8:126907543,chr8:126991041,chr8:126800694,chr8:126907454,chr8:126862631,chr8:127012155,chr8:126907566,chr8:126991068,chr8:126991040,chr8:126800816,chr8:126961032,chr8:126800676,chr8:126907433,chr8:126949014,chr8:126990926,chr8:126919356,chr8:126800571,chr8:126907327,chr8:126863875,chr8:127014029,chr8:127013079,chr8:126871820,chr8:126871752,chr8:126855058,chr8:126855014,chr8:126854955,chr8:126764482,chr8:126763994,chr8:126763816,chr8:126847840,chr8:126960998,chr8:126961127,chr8:126757846,chr8:126982704,chr8:126778983,chr8:126992056,chr8:126787133,chr8:126966828,chr8:126966219,chr8:126966894,chr8:126966681,chr8:126966426,chr8:126844846,chr8:126907446,chr8:126907373,chr8:126770275,chr8:126910339,chr8:126976136,chr8:126855077,chr8:126854965,chr8:126882345,chr8:126862701,chr8:126862676,chr8:126826368,chr8:126826565,chr8:126826699,chr8:126826732,chr8:126887417,chr8:126825884,chr8:126825884,chr8:126861015,chr8:126787070,chr8:126789824,chr8:126789919,chr8:126789919,chr8:126794427,chr8:126800571,chr8:126800704,chr8:126800695,chr8:126800733,chr8:126803750,chr8:126803790,chr8:126802727,chr8:126805233,chr8:126805648,chr8:126805648,chr8:126806126,chr8:126806976,chr8:126808901,chr8:126809057,chr8:126809493,chr8:126815380,chr8:126815562,chr8:126816081,chr8:126815068,chr8:126816192,chr8:126816192,chr8:126816208,chr8:126819015,chr8:126826163,chr8:126826160,chr8:126826154,chr8:126826449,chr8:126826514,chr8:126845212,chr8:126845854,chr8:126844816,chr8:126846280,chr8:126844821,chr8:126844848,chr8:126844908,chr8:126844877,chr8:126844902,chr8:126844902,chr8:126844914,chr8:126844914,chr8:126845010,chr8:126845003,chr8:126845127,chr8:126847614,chr8:126849459,chr8:126849459,chr8:126849760,chr8:126853673,chr8:126853753,chr8:126853753,chr8:126853814,chr8:126854995,chr8:126854995,chr8:126855115,chr8:126855905,chr8:126854890,chr8:126854926,chr8:126854916,chr8:126854953,chr8:126854998,chr8:126854970,chr8:126862378,chr8:126862378,chr8:126862475,chr8:126862568,chr8:126862732,chr8:126863265,chr8:126862279,chr8:126862307,chr8:126862351,chr8:126862378,chr8:126871749,chr8:126873225,chr8:126875152,chr8:126879296,chr8:126880170,chr8:126881464,chr8:126749740,chr8:126883760,chr8:126885500,chr8:126885819,chr8:126886989,chr8:126887122,chr8:126900816,chr8:126900981,chr8:126902831,chr8:126903752,chr8:126903818,chr8:126903906,chr8:126909061,chr8:126909342,chr8:126909375,chr8:126909375,chr8:126907368,chr8:126907399,chr8:126907399,chr8:126907505,chr8:126907487,chr8:126907473,chr8:126907498,chr8:126907834,chr8:126908172,chr8:126908172,chr8:126908172,chr8:126912154,chr8:126912137,chr8:126911542 chr8:127136212,chr8:127206260,chr8:127263539,chr8:127184337,chr8:127184470,chr8:127184509,chr8:127184627,chr8:127206315,chr8:127213062,chr8:127257864,chr8:127137928,chr8:127254005,chr8:127238109,chr8:127238120,chr8:127254168,chr8:127254032,chr8:127254034,chr8:127238227,chr8:127238329,chr8:127254241,chr8:127207108,chr8:127158123,chr8:127158138,chr8:127167609,chr8:127287086,chr8:127278168,chr8:127238120,chr8:127168928,chr8:127168151,chr8:127238228,chr8:127167562,chr8:127167529,chr8:127238229,chr8:127254137,chr8:127207274,chr8:127167335,chr8:127167451,chr8:127245689,chr8:127249038,chr8:127249025,chr8:127249040,chr8:127245774,chr8:127245860,chr8:127249191,chr8:127245848,chr8:127249180,chr8:127167636,chr8:127167655,chr8:127167605,chr8:127167558,chr8:127167553,chr8:127202526,chr8:127254240,chr8:127254255,chr8:127202558,chr8:127254197,chr8:127279747,chr8:127202557,chr8:127254233,chr8:127206122,chr8:127166874,chr8:127185173,chr8:127258063,chr8:127167102,chr8:127245956,chr8:127139726,chr8:127130795,chr8:127130807,chr8:127130797,chr8:127130808,chr8:127130782,chr8:127131095,chr8:127131085,chr8:127131112,chr8:127207125,chr8:127133865,chr8:127133865,chr8:127133882,chr8:127133934,chr8:127133934,chr8:127133934,chr8:127134110,chr8:127133680,chr8:127133421,chr8:127133749,chr8:127133770,chr8:127135699,chr8:127135699,chr8:127135699,chr8:127135699,chr8:127135699,chr8:127135699,chr8:127139379,chr8:127140892,chr8:127139223,chr8:127139211,chr8:127142490,chr8:127144958,chr8:127145692,chr8:127144011,chr8:127155031,chr8:127158492,chr8:127158104,chr8:127158135,chr8:127163766,chr8:127163843,chr8:127274463,chr8:127278390,chr8:127166543,chr8:127166974,chr8:127167198,chr8:127167455,chr8:127167485,chr8:127167485,chr8:127167485,chr8:127167498,chr8:127167606,chr8:127167603,chr8:127167646,chr8:127167617,chr8:127167622,chr8:127167676,chr8:127167718,chr8:127166139,chr8:127169396,chr8:127171300,chr8:127173376,chr8:127175826,chr8:127176134,chr8:127175434,chr8:127178677,chr8:127177946,chr8:127184265,chr8:127184345,chr8:127184319,chr8:127184311,chr8:127184336,chr8:127184436,chr8:127184488,chr8:127184487,chr8:127184507,chr8:127184517,chr8:127185101,chr8:127193589,chr8:127194936,chr8:127197607,chr8:127202189,chr8:127202521,chr8:127204704,chr8:127205446,chr8:127205446,chr8:127205446,chr8:127205446,chr8:127207645,chr8:127207939,chr8:127236038,chr8:127291255,chr8:127218647,chr8:127220859,chr8:127221062,chr8:127222161,chr8:127227305,chr8:127225483,chr8:127234366,chr8:127234366,chr8:127234465,chr8:127234577,chr8:127234577,chr8:127234577,chr8:127234778,chr8:127233722,chr8:127233722,chr8:127235971,chr8:127236535,chr8:127236535,chr8:127236535,chr8:127236799,chr8:127238040,chr8:127238064,chr8:127238160,chr8:127238221,chr8:127238221,chr8:127238290,chr8:127238290,chr8:127238290,chr8:127238313,chr8:127238285,chr8:127238328,chr8:127238328,chr8:127238328,chr8:127241885,chr8:127243451,chr8:127243677,chr8:127243677,chr8:127243745,chr8:127245723,chr8:127245770,chr8:127245956,chr8:127248606,chr8:127248792,chr8:127247730,chr8:127252151,chr8:127254088,chr8:127254211,chr8:127256955,chr8:127256993,chr8:127226044,chr8:127264964,chr8:127271377,chr8:127272187,chr8:127273846,chr8:127274590,chr8:127272164,chr8:127278071,chr8:127280119,chr8:127280137,chr8:127280345,chr8:127280313,chr8:127280313,chr8:127281487,chr8:127282463,chr8:127284545,chr8:127290734,chr8:127293608,chr8:127293695,chr8:127295380,chr8:127295572,chr8:127295723,chr8:127295760,chr8:127295836,chr8:127295000,chr8:127295237,chr8:127304986,chr8:127271300,chr8:127178572,chr8:127178481,chr8:127202694,chr8:127181717,chr8:127238314,chr8:127238165,chr8:127238165,chr8:127238138,chr8:127140540,chr8:127139530,chr8:127257187,chr8:127244057,chr8:127191403,chr8:127225465,chr8:127206148,chr8:127271594,chr8:127238230,chr8:127197561,chr8:127235846,chr8:127295420,chr8:127290843,chr8:127207753,chr8:127134056,chr8:127133882,chr8:127173288,chr8:127207268,chr8:127212253,chr8:127295238,chr8:127295246,chr8:127295246,chr8:127295552,chr8:127295278,chr8:127279525,chr8:127278183,chr8:127280128,chr8:127278909,chr8:127167533,chr8:127280161,chr8:127167524,chr8:127202694,chr8:127167540,chr8:127202707,chr8:127167551,chr8:127202705,chr8:127280183,chr8:127167528,chr8:127167594,chr8:127167001,chr8:127145071,chr8:127237976,chr8:127238329,chr8:127213873,chr8:127178678,chr8:127194929,chr8:127194473,chr8:127245894,chr8:127245901,chr8:127245803,chr8:127282156,chr8:127245740,chr8:127245858,chr8:127245927,chr8:127245784,chr8:127245766,chr8:127245801,chr8:127178224,chr8:127293911,chr8:127178582,chr8:127178572,chr8:127178524,chr8:127205239,chr8:127293493,chr8:127207451,chr8:127178294,chr8:127178229,chr8:127241737,chr8:127222544,chr8:127237618,chr8:127274491,chr8:127245660,chr8:127194529,chr8:127283946,chr8:127218671,chr8:127133848,chr8:127180481,chr8:127296281,chr8:127275575,chr8:127239330,chr8:127178578,chr8:127271362,chr8:127158118,chr8:127136674,chr8:127136854,chr8:127206423,chr8:127280304,chr8:127277797,chr8:127282176,chr8:127150946,chr8:127238230,chr8:127280304,chr8:127238135,chr8:127238151,chr8:127279892,chr8:127238140,chr8:127204184,chr8:127157053,chr8:127208000,chr8:127289220,chr8:127207597,chr8:127206207,chr8:127126256 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 80 1660 156 ENST00000651999.1 ENST00000651482.1 downstream downstream duplicates(17),mismatches(9),multimappers(2) GCTGAGCCGCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___CGCAGTGAGATTGGAGAGCATCCTCCGATGCACTGTACATTTGGGAGGAAGAGAAAGGATAAGAGCCCTGCTGATTCAGTGGTGGTCATTATCATTGTCAATGGAGCTGTCACTGTTATCGTCATTTTCGTTTGCGGTGAG|GGTTATAGCTACTCTTACAGAAGACATAAGAAGATATATACGCAGAGAAGACATCATAAGACCTGAAGATGAAAAACTTCTGATCACAGAAGAAAGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25558 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125946182:- chr8:126871965-127305033:- chr8:126958426:- 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NA NA 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4572,chr8:126974265,chr8:126974597,chr8:126974594,chr8:126970584,chr8:126974655,chr8:126974711,chr8:126974745,chr8:126974693,chr8:126974736,chr8:126970640,chr8:126974764,chr8:126974703,chr8:126974813,chr8:126974816,chr8:126974646,chr8:126974668,chr8:126974816,chr8:126974853,chr8:126974845,chr8:126974901,chr8:126974919,chr8:126974948,chr8:126974955,chr8:126974982,chr8:126974979,chr8:126975022,chr8:126975015,chr8:126974949,chr8:126974950,chr8:126975024,chr8:126974750,chr8:126975080,chr8:126975011,chr8:126975096,chr8:126970668,chr8:126975062,chr8:126975183,chr8:126975072,chr8:126967246,chr8:127166549,chr8:126975163,chr8:126975180,chr8:127166055,chr8:127244583,chr8:127250175,chr8:126970785,chr8:126970285,chr8:126970781,chr8:127243008,chr8:126970822,chr8:126970839,chr8:126970281,chr8:126970808,chr8:126970332,chr8:126970866,chr8:126970837,chr8:126970875,chr8:126974693,chr8:126970574,chr8:126970823,chr8:126971000,chr8:126971028,chr8:126971105,chr8:126971157,chr8:126971165,chr8:126971260,chr8:126971155,chr8:126971414,chr8:126971440,chr8:126971460,chr8:126970394,chr8:126971509,chr8:126971509,chr8:126971462,chr8:126970397,chr8:126971400,chr8:126971400,chr8:126967269,chr8:126970443,chr8:126971492,chr8:126970457,chr8:126970459,chr8:126970503,chr8:127101309,chr8:127119953,chr8:127120009,chr8:127120083,chr8:127120358,chr8:127120344,chr8:127120373,chr8:127119194,chr8:127120413,chr8:127119236,chr8:127120496,chr8:127120496,chr8:127120549,chr8:127120664,chr8:127120966,chr8:127119346,chr8:127131085,chr8:127131112,chr8:127130808,chr8:127130782,chr8:127133934,chr8:127133934,chr8:127139211,chr8:127140792,chr8:127140979,chr8:127140969,chr8:127140995,chr8:127142490,chr8:126979645,chr8:126979665,chr8:126979664,chr8:126979861,chr8:126979845,chr8:126979836,chr8:126979758,chr8:126979801,chr8:126979851,chr8:126979853,chr8:126979711,chr8:126979707,chr8:126979781,chr8:126979971,chr8:126979974,chr8:126979967,chr8:126979918,chr8:126979988,chr8:126980004,chr8:126979877,chr8:126980146,chr8:126980181,chr8:126980181,chr8:126980190,chr8:126980240,chr8:126980250,chr8:126980227,chr8:126980330,chr8:126980270,chr8:126980308,chr8:126980422,chr8:126980392,chr8:126980337,chr8:126980235,chr8:126980585,chr8:126980608,chr8:126980636,chr8:126980674,chr8:126980566,chr8:126980699,chr8:126980708,chr8:126980730,chr8:126980828,chr8:126980879,chr8:126980885,chr8:126980878,chr8:126980888,chr8:126981043,chr8:126981004,chr8:126981120,chr8:126981119,chr8:126981225,chr8:126981259,chr8:126981311,chr8:126981345,chr8:126981253,chr8:126981170,chr8:126981423,chr8:126981416,chr8:126981469,chr8:126981482,chr8:126981511,chr8:126981613,chr8:126981694,chr8:126981714,chr8:127072933,chr8:126981560 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 2 7 9 6490 3296 ENST00000651999.1 ENST00000651667.1 downstream downstream duplicates(3),multimappers(1) GCACCGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|GTATCCCACTTCTAAGATGCCTGATCTGAAGGACAGTAAAACAACTGACCTTTGCCAGCATGTAAAACACATGGTTTAACTAGTCCTCCAGGAACAACACTGAGCAATCCTGACCTGGGACTACTTTACTCGGCCATCTCCTACTTGAGATGCTCCTTGTCTCTCTGTTCAAGGACACCTTTTCTGAGCCTTTCTTGAACAAGAGTGGAGGACCGATAGGGCGATTAAACTGTCCTTGACACAACTTTAG___AGCTTCAACTGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25559 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125886905:+ chr8:126660571-127021174:+ chr8:126899149:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125936333:- chr8:126871965-127305033:- chr8:126948577:- 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NA NA 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3966,chr8:127013969,chr8:127014039,chr8:127014021,chr8:127014007,chr8:127013188,chr8:127013188,chr8:127013188,chr8:127014113,chr8:127014124,chr8:127014094,chr8:127014170,chr8:127013165,chr8:127013244,chr8:127013300,chr8:127017141,chr8:127017192,chr8:127017274,chr8:127017239,chr8:127017257,chr8:127017348,chr8:127017356,chr8:127017377,chr8:127017448,chr8:127017468,chr8:127017497,chr8:127017547,chr8:127017591,chr8:127016963,chr8:127019044,chr8:127019055,chr8:127019056,chr8:127019126,chr8:127019094,chr8:127019107,chr8:127019147,chr8:127019167,chr8:127019248,chr8:127019215,chr8:127019308,chr8:127019330,chr8:127019351,chr8:127019374,chr8:127018853,chr8:127019385,chr8:127019452,chr8:127019439,chr8:127019456,chr8:127018869,chr8:127019544,chr8:127018884,chr8:127018883,chr8:127018867,chr8:127018952,chr8:127018927,chr8:127019018,chr8:127019087,chr8:127023217,chr8:127023430,chr8:127025911,chr8:127026161,chr8:127026504,chr8:127025580,chr8:127025847,chr8:127025847,chr8:127025823,chr8:127025832,chr8:127030083,chr8:127030513,chr8:127030513,chr8:127038179,chr8:127038724,chr8:127038164,chr8:127038851,chr8:127038188,chr8:127038963,chr8:127038904,chr8:127039103,chr8:127039288,chr8:127038276,chr8:127038347,chr8:127038366,chr8:127038382,chr8:127038415,chr8:127038507,chr8:127136212,chr8:127206260 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 1 3221 476 ENST00000651999.1 ENST00000651667.1 downstream downstream duplicates(2) CGCGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___AGATCATCTGGTTCCATCTTGTCTTGAGAATGGACATCAAAGTACTATTTTTGTTGTGATTGTTCAAG|AGCTTCAACTGAGAATCTAGAAGAGAGTAGATGGAAAAATATTTTTCCCTCCCCTCCAAATGCAAGGATAATCTTACACGAGTCCAGGAGGAAG___GCTCA...GAGCTCCTATGGCCCAGAAGCTGGCATCCTGTGAGTGGGTAGGTTGATGATTATGCCAACTAACCCTGCAGGGATTCATGCTGACTTTGAGATCCACTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25560 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125725888:+ chr8:126660571-127021174:+ chr8:126738132:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125876447:- chr8:126871965-127305033:- chr8:126888691:- chr8:125985854,chr8:125985504,chr8:125985866,chr8:125985888,chr8:125985913,chr8:125985973,chr8:125985506,chr8:125985972,chr8:125985544,chr8:125986021,chr8:125986085,chr8:125986081,chr8:125986078,chr8:125985540,chr8:125986106,chr8:125986094,chr8:125986177,chr8:125986200,chr8:125986230,chr8:125986233,chr8:125986259,chr8:125986344,chr8:125986331,chr8:125986425,chr8:125986457,chr8:125986482,chr8:125986480,chr8:125986496,chr8:125985593,chr8:125986487,chr8:125986556,chr8:125986548,chr8:125986515,chr8:125986677,chr8:125986659,chr8:125986675,chr8:125986836,chr8:125986839,chr8:125986839,chr8:125986839,chr8:125986846,chr8:125986812,chr8:125986868,chr8:125986887,chr8:125986868,chr8:125986870,chr8:125986907,chr8:125985655,chr8:125986915,chr8:125986963,chr8:125987026,chr8:125987069,chr8:125987041,chr8:125987155,chr8:125985691,chr8:125985761,chr8:125985781,chr8:125987309,chr8:125987302,chr8:125987938,chr8:125987951,chr8:125988032,chr8:125988122,chr8:125988174,chr8:125987331,chr8:125988177,chr8:125988250,chr8:125988299,chr8:125988364,chr8:125988364,chr8:125988426,chr8:125988453,chr8:125988547,chr8:125988572,chr8:125987384,chr8:125987384,chr8:125988591,chr8:125988697,chr8:125988692,chr8:125988708,chr8:125987371,chr8:125987371,chr8:125987434,chr8:125987425,chr8:125987425,chr8:125987466,chr8:125987466,chr8:125987466,chr8:125987466,chr8:125987447,chr8:125987477,chr8:125987477,chr8:125987477,chr8:125987435,chr8:125987460,chr8:125987523,chr8:125987474,chr8:125987537,chr8:125987492,chr8:125987608,chr8:125987607,chr8:125987607,chr8:125987607,chr8:125987709,chr8:125987788,chr8:125987834,chr8:125987803,chr8:125987806,chr8:125987845,chr8:125987819,chr8:125987888,chr8:125987873,chr8:125987203,chr8:125987909,chr8:125987934,chr8:125987232,chr8:125987253,chr8:125988925,chr8:125991382,chr8:125988885,chr8:125991467,chr8:125991486,chr8:125991566,chr8:125991558,chr8:125991637,chr8:125988936,chr8:125991667,chr8:125991756,chr8:125988981,chr8:125991821,chr8:125988966,chr8:125989015,chr8:125989022,chr8:125989075,chr8:125989075,chr8:125989106,chr8:125989139,chr8:125989137,chr8:125989134,chr8:125989160,chr8:125989147,chr8:125989207,chr8:125989200,chr8:125989201,chr8:125989174,chr8:125989215,chr8:125989224,chr8:125989276,chr8:125989319,chr8:125989348,chr8:125989387,chr8:125989356,chr8:125989594,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989611,chr8:125989578,chr8:125989578,chr8:125989578,chr8:125989578,chr8:125989578,chr8:125989578,chr8:125989596,chr8:125989609,chr8:125989609,chr8:125989609,chr8:125989609,chr8:125989635,chr8:125989642,chr8:125989726,chr8:125989721,chr8:125989940,chr8:125989989,chr8:125990036,chr8:125990024,chr8:125990023,chr8:125990031,chr8:125990039,chr8:125990092,chr8:125990086,chr8:125990066,chr8:125990141,chr8:125990135,chr8:125990160,chr8:125990259,chr8:125990276,chr8:125990319,chr8:125990353,chr8:125990407,chr8:125990440,chr8:125990469,chr8:125990500,chr8:125990523,chr8:125990604,chr8:125990588,chr8:125990663,chr8:125990793,chr8:125990808,chr8:125990892,chr8:125990923,chr8:125990894,chr8:125990961,chr8:125991028,chr8:125991003,chr8:125991025,chr8:125991108,chr8:125988841,chr8:125991143,chr8:125991254,chr8:125991288,chr8:125991340,chr8:125991300,chr8:125991388,chr8:125991388,chr8:125991388,chr8:125991388,chr8:125991388,chr8:125991388,chr8:125993015,chr8:125993381,chr8:125993443,chr8:125993504,chr8:125993487,chr8:125993578,chr8:125993549,chr8:125993603,chr8:125993665,chr8:125993768,chr8:125993727,chr8:125993756,chr8:125993853,chr8:125993909,chr8:125993935,chr8:125993928,chr8:125993947,chr8:125993986,chr8:125993977,chr8:125994079,chr8:125994069,chr8:125994113,chr8:125994113,chr8:125994113,chr8:125994112,chr8:125994080,chr8:125994118,chr8:125994121,chr8:125994244,chr8:125994259,chr8:125994268,chr8:125994284,chr8:125994327,chr8:125994289,chr8:125994419,chr8:125994351,chr8:125994412,chr8:125994429,chr8:125994452,chr8:125994399,chr8:125994424,chr8:125994545,chr8:125994578,chr8:125994607,chr8:125994576,chr8:125994602,chr8:125994651,chr8:125994689,chr8:125994692,chr8:125994672,chr8:125994709,chr8:125994755,chr8:125994763,chr8:125994909,chr8:125994906,chr8:125994924,chr8:125995036,chr8:125995034,chr8:125995035,chr8:125995082,chr8:125999943,chr8:125999951,chr8:125999979,chr8:126000023,chr8:125999995,chr8:125999994,chr8:125999994,chr8:125999987,chr8:125999977,chr8:125998013,chr8:126000095,chr8:126000035,chr8:125998042,chr8:126000164,chr8:126000191,chr8:125998081,chr8:126000262,chr8:126000291,chr8:126000283,chr8:125997863,chr8:126000302,chr8:125998088,chr8:126000386,chr8:126000496,chr8:126000662,chr8:125998072,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000720,chr8:126000787,chr8:126000787,chr8:126000787,chr8:126000787,chr8:126000787,chr8:126000787,chr8:126000900,chr8:126000900,chr8:126000900,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000944,chr8:126000921,chr8: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NA NA 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chr8:126989877,chr8:126989835,chr8:126989915,chr8:126989965,chr8:126989980,chr8:126989663,chr8:126989786,chr8:126990017,chr8:126990143,chr8:126990116,chr8:126990166,chr8:126989935,chr8:126990102,chr8:126989862,chr8:126990230,chr8:126989708,chr8:126990263,chr8:126990276,chr8:126990171,chr8:126990276,chr8:126990198,chr8:126990283,chr8:126990262,chr8:126990382,chr8:126990228,chr8:126990463,chr8:126990473,chr8:126990172,chr8:126990501,chr8:126990454,chr8:126990540,chr8:126990539,chr8:126990269,chr8:126990603,chr8:126990565,chr8:126990749,chr8:126989745,chr8:126990793,chr8:126990732,chr8:126990870,chr8:126989757,chr8:126990912,chr8:126991117,chr8:126990926,chr8:126990987,chr8:126932763,chr8:126991017,chr8:126999671,chr8:127168151,chr8:127238228,chr8:126989399,chr8:126991083,chr8:126991090,chr8:126991099,chr8:126999741,chr8:127167562,chr8:126991116,chr8:127167529,chr8:126989619,chr8:126991149,chr8:126990948,chr8:126990944,chr8:126990956,chr8:126989721,chr8:126990972,chr8:126990947,chr8:126991166,chr8:126991163,chr8:126991162,chr8:126991233,chr8:126991277,chr8:126991280,chr8:126991444,chr8:126991431,chr8:126991395,chr8:126991498,chr8:126991454,chr8:126991510,chr8:126991487,chr8:126991632,chr8:126991640,chr8:126991644,chr8:126991666,chr8:126991738,chr8:126991733,chr8:126991745,chr8:126991742,chr8:126991700,chr8:126989843,chr8:126991773,chr8:126991768,chr8:126932767,chr8:127238229,chr8:126991863,chr8:126999664,chr8:127254137,chr8:126991765,chr8:126989433,chr8:126991925,chr8:126991953,chr8:126993137,chr8:126993140,chr8:126993083,chr8:126993205,chr8:126992987,chr8:126993449,chr8:126993384,chr8:126993389,chr8:126993429,chr8:126993428,chr8:126993496,chr8:126993538,chr8:126993562,chr8:126993595,chr8:126993610,chr8:126993600,chr8:126993936,chr8:126993948,chr8:126993944,chr8:126993991,chr8:126994012,chr8:126994028,chr8:126994070,chr8:126994110,chr8:126994119,chr8:126994117,chr8:126994131,chr8:126994029,chr8:126993067,chr8:126994211,chr8:126994239,chr8:126994260,chr8:126994267,chr8:126994066,chr8:127038840,chr8:126994303,chr8:126994235,chr8:126993029,chr8:126994326,chr8:126994310,chr8:126994344,chr8:126994354,chr8:126994350,chr8:126994346,chr8:126994378,chr8:126994554,chr8:126994451,chr8:126995425,chr8:126995464,chr8:126995543,chr8:126995587,chr8:126995604,chr8:126995633,chr8:126995643,chr8:126995709,chr8:126995779,chr8:126995744,chr8:126995761,chr8:126995419,chr8:126995815,chr8:126995785,chr8:126995901,chr8:126995906,chr8:126995909,chr8:126995921,chr8:126995880,chr8:126996549,chr8:126996478,chr8:126996615,chr8:127206139,chr8:126996588,chr8:126996605,chr8:126996622,chr8:126996656,chr8:126996699,chr8:126996789,chr8:126996860,chr8:126996845,chr8:126996260,chr8:126996758,chr8:126997067,chr8:126997066,chr8:126997101,chr8:126997263,chr8:126997266,chr8:126997262,chr8:126997294,chr8:126997398,chr8:126997390,chr8:126997375,chr8:126997480,chr8:126997479,chr8:126997547,chr8:126997552,chr8:126997475,chr8:126997581,chr8:126997586,chr8:126997636,chr8:126997639,chr8:126997672,chr8:126996347,chr8:126996426 NA NA sense sense unknown exon/splice-site exon/splice-site inversion low none none none 0 1 0 1660 63 ENST00000651999.1 ENST00000651667.1 downstream downstream duplicates(2) AAGAGCCCTGCTGATTCAGTGGTGGTCATTATCATTGTCAATGGAGCTGTCACTGTTATCGTCATTTTCGTTTGCGGTGAG|CTAAAATGAAAAGCGGAATT...GCACTTCTCCATAGATGCATCTAATCCAGCCTG___TTCTAGGAGTCTTTCTAGGAAATCATCAAACCTGAGTGTGGTCTTGGAGACCCTAACACAG___ATAAGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25562 LINC02964::MTBP ENSG00000286122.1::ENSG00000172167.8 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2350 TRUE 4305 TRUE 1632 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ MTBP ENSG00000172167.8 protein_coding + + chr8:120445400-120542133:+ chr8:120538694:+ chr8:121457640-121554373:+ chr8:121550934:+ chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975282,chr8:125975290,chr8:125975277,chr8:125975276,chr8:125975238,chr8:125975290,chr8:125975289,chr8:125975108,chr8:125975235 chr8:120528292,chr8:120528294,chr8:120528301,chr8:120528298,chr8:120528288,chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528287,chr8:120528288,chr8:120528393,chr8:120528136 NA NA chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987526,chr8:126987534,chr8:126987521,chr8:126987520,chr8:126987482,chr8:126987534,chr8:126987533,chr8:126987352,chr8:126987479 chr8:121540532,chr8:121540534,chr8:121540541,chr8:121540538,chr8:121540528,chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540527,chr8:121540528,chr8:121540633,chr8:121540376 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none |MTBP_C(0%) 30 31 25 6490 35308 ENST00000651999.1 ENST00000519841.1 downstream upstream duplicates(35),mismatches(2),multimappers(1) CTGACAGTCCCGCGTTGCCCTCAATCTGAAGGTATGGATAATTAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|GGTATCCCTTGTAGTTGCTGAAACTGACAGAGGAGTCTGGGACAGTTACATACGACTCTTGAGAGCTAAAGCTGACTGTAGCACGCTACATCTGGTGCGCTGCTCACTACAGATGGTGTCTGACATCACGTTCTCTGGTGGCATTGCAGCCCTTCTTTTCTCAAAGGCAg___AAACCATCTCAGGAAATTATGAATTTCAACACATGGACTACTTGCATTGAGACGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25563 LINC02964::MTBP ENSG00000286122.1::ENSG00000172167.8 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4305 TRUE 1632 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125886905:+ chr8:126660571-127021174:+ chr8:126899149:+ MTBP ENSG00000172167.8 protein_coding + + chr8:120445400-120542133:+ chr8:120538694:+ chr8:121457640-121554373:+ chr8:121550934:+ chr8:125975290,chr8:125975277,chr8:125975276,chr8:125975238,chr8:125975290,chr8:125975289,chr8:125975108,chr8:125975235,chr8:125910039,chr8:125907978,chr8:125907962,chr8:125907801,chr8:125910118,chr8:125910223,chr8:125910272,chr8:125910254,chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975282 chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528287,chr8:120528288,chr8:120528393,chr8:120528136,chr8:120531741,chr8:120535305,chr8:120535327,chr8:120535370,chr8:120531735,chr8:120531673,chr8:120531674,chr8:120531664,chr8:120528292,chr8:120528294,chr8:120528301,chr8:120528298,chr8:120528288 NA NA chr8:126987534,chr8:126987521,chr8:126987520,chr8:126987482,chr8:126987534,chr8:126987533,chr8:126987352,chr8:126987479,chr8:126922283,chr8:126920222,chr8:126920206,chr8:126920045,chr8:126922362,chr8:126922467,chr8:126922516,chr8:126922498,chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987526 chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540527,chr8:121540528,chr8:121540633,chr8:121540376,chr8:121543981,chr8:121547545,chr8:121547567,chr8:121547610,chr8:121543975,chr8:121543913,chr8:121543914,chr8:121543904,chr8:121540532,chr8:121540534,chr8:121540541,chr8:121540538,chr8:121540528 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none none |MTBP_C(0%) 0 1 8 3221 35308 ENST00000651999.1 ENST00000519841.1 downstream upstream duplicates(6),mismatches(1) CTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAG___AGATCATCTGGTTCCATCTTGTCTTGAGAATGGACATCAAAGTACTATTTTTGTTGTGATTGTTCAAG|GGTATCCCTTGTAGTTGCTGAAACTGACAGAGGAGTCTGGGACAGTTACATACGACTCTTGAGAGCTAAAGCTGACTGTAGCACGCTACATCTGGTGCGCTGCTCACTACAGATGGTGTCTGACATCACGTTCTCTGGTGGCATTGCAGCCCTTCTTTTCTCAAAGGCA?___AAACCATCTCAGGAAATTATGAATTTCAACACATGGACTACTTGCATTGAGACGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25565 MTBP::LINC00861 ENSG00000172167.8::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MTBP ENSG00000172167.8 protein_coding + + chr8:120445400-120542133:+ chr8:120538860:+ chr8:121457640-121554373:+ chr8:121551100:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:126067455:- chr8:126871965-127305033:- chr8:127079699:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site intron inversion medium none MDM2-binding(100%)| MTBP_C(100%),MTBP_N(100%),MTBP_mid(100%)| 21 21 46 37932 1658 ENST00000519556.1 unknown downstream downstream duplicates(24),mismappers(1),mismatches(3) TGGGATTATAGTCGTGAGCC?CC?CATCCAGCCAGAAGTTTTGGCTCTAACAAT...GAACTTTCAAACATCTCT?CCCATCC?GCAGtGG?ATGACCTG...___GGTATCCCTTGTAGTTGCTGAAACTGACAGAGGAGTCTGGGACAGTTACATACGACTCTTGAGAGCTAAAGCTGACTGTAGCACGCTACATCTGGTGCGCTGCTCACTACAGATGGTGTCTGACATCACGTTCTCTGGTGGCATTGCAGCCCTTCTTTTCTCAAAGG|TGTTCCTCAAGTCCCTGAAGACAGAGAGAATTGCTCCCTCTCACTAATATGTGGGCTGAGAGTATTTTAAATGGCTGGAGTTTGGAGGAGGCACTGAAACAGTAACGTCTGACTCCTATTTCACTCAATTTTTGACAAGACTTGGGATGAGAATGAAGAAGAGTGATAACAATTGAAGAGAATTTTATTCGCTTTCATTCTTTCACAGACACCTGCCCCAATAGCACACACCCCAAATGGACAAAGTTCAGCTCTGCTGAAGCCGGCACATTAAATGAGTGAAATATTTTTAGTAAGAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25566 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4306 TRUE 1633 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ chr8:127907236,chr8:127907259,chr8:127907200,chr8:127907159,chr8:127907177,chr8:127901712,chr8:127901279,chr8:127901486,chr8:127907709,chr8:127907113,chr8:127907209,chr8:127907218,chr8:127901765 chr8:127588535,chr8:127588547,chr8:127588573,chr8:127588604,chr8:127588606,chr8:127579717,chr8:127579776,chr8:127579671,chr8:127589091,chr8:127588670,chr8:127588509,chr8:127588503,chr8:127579885 NA NA chr8:128919482,chr8:128919505,chr8:128919446,chr8:128919405,chr8:128919423,chr8:128913958,chr8:128913525,chr8:128913732,chr8:128919955,chr8:128919359,chr8:128919455,chr8:128919464,chr8:128914011 chr8:128600780,chr8:128600792,chr8:128600818,chr8:128600849,chr8:128600851,chr8:128591962,chr8:128592021,chr8:128591916,chr8:128601336,chr8:128600915,chr8:128600754,chr8:128600748,chr8:128592130 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 78 47 93 11923 741 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(48),mismatches(9) ACACGCCCGGCACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG___CTCATGTTGCATGTGGATGGCTGCAGCTCAGCAGCTGTAGAATCTGCACCACCTGTCTTATGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25567 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4306 TRUE 1633 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127902539:+ chr8:128806772-129199347:+ chr8:128914785:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ chr8:127907709,chr8:127907113,chr8:127907209,chr8:127907218,chr8:127907236,chr8:127907259,chr8:127907200,chr8:127907159,chr8:127907177 chr8:127589091,chr8:127588670,chr8:127588509,chr8:127588503,chr8:127588535,chr8:127588547,chr8:127588573,chr8:127588604,chr8:127588606 NA NA chr8:128919955,chr8:128919359,chr8:128919455,chr8:128919464,chr8:128919482,chr8:128919505,chr8:128919446,chr8:128919405,chr8:128919423 chr8:128601336,chr8:128600915,chr8:128600754,chr8:128600748,chr8:128600780,chr8:128600792,chr8:128600818,chr8:128600849,chr8:128600851 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 3 4 95 557 741 ENST00000657297.1 ENST00000650971.1 downstream upstream duplicates(22),mismatches(5) CTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG___AATCAAGAGATGCATATGCAGGTTTGTTACAGAGGTATATGGGATGCGGTTGAAGTTTGGAGTATGATTGAACTCATCACGCAG|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCCTCTGTGACCTGATTGTGTTATCTTCATAACCAAG___CTCATGTTGCATGTGGATGGCTGCAGCTCAGCAGCTGTAGAATCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25569 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4306 TRUE 1633 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127629768:+ chr8:128590718-128649112:+ chr8:128642013:+ chr8:127912882,chr8:127912892,chr8:127912940,chr8:127912940,chr8:127912948,chr8:127913022,chr8:127913022,chr8:127913068,chr8:127913080,chr8:127913142,chr8:127913142,chr8:127913149,chr8:127913149,chr8:127913141,chr8:127913357,chr8:127912703,chr8:127901765,chr8:127907236,chr8:127907259,chr8:127907200,chr8:127907159,chr8:127907177,chr8:127893759,chr8:127912907,chr8:127912789,chr8:127912978,chr8:127912974,chr8:127912909,chr8:127912773,chr8:127912909,chr8:127908638,chr8:127908409,chr8:127901712,chr8:127901279,chr8:127901486,chr8:127907218,chr8:127907218,chr8:127907709,chr8:127906974,chr8:127907113,chr8:127907113,chr8:127907209 chr8:127604305,chr8:127604305,chr8:127595981,chr8:127604262,chr8:127595972,chr8:127596064,chr8:127604348,chr8:127596063,chr8:127596209,chr8:127596065,chr8:127604349,chr8:127596053,chr8:127604342,chr8:127596056,chr8:127622406,chr8:127596208,chr8:127579885,chr8:127588535,chr8:127588547,chr8:127588573,chr8:127588604,chr8:127588606,chr8:127610769,chr8:127595960,chr8:127596026,chr8:127596029,chr8:127603856,chr8:127604374,chr8:127622388,chr8:127622301,chr8:127629170,chr8:127629259,chr8:127579717,chr8:127579776,chr8:127579671,chr8:127588503,chr8:127604254,chr8:127589091,chr8:127604025,chr8:127588670,chr8:127607401,chr8:127588509 NA NA chr8:128925128,chr8:128925138,chr8:128925186,chr8:128925186,chr8:128925194,chr8:128925268,chr8:128925268,chr8:128925314,chr8:128925326,chr8:128925388,chr8:128925388,chr8:128925395,chr8:128925395,chr8:128925387,chr8:128925603,chr8:128924949,chr8:128914011,chr8:128919482,chr8:128919505,chr8:128919446,chr8:128919405,chr8:128919423,chr8:128906005,chr8:128925153,chr8:128925035,chr8:128925224,chr8:128925220,chr8:128925155,chr8:128925019,chr8:128925155,chr8:128920884,chr8:128920655,chr8:128913958,chr8:128913525,chr8:128913732,chr8:128919464,chr8:128919464,chr8:128919955,chr8:128919220,chr8:128919359,chr8:128919359,chr8:128919455 chr8:128616550,chr8:128616550,chr8:128608226,chr8:128616507,chr8:128608217,chr8:128608309,chr8:128616593,chr8:128608308,chr8:128608454,chr8:128608310,chr8:128616594,chr8:128608298,chr8:128616587,chr8:128608301,chr8:128634651,chr8:128608453,chr8:128592130,chr8:128600780,chr8:128600792,chr8:128600818,chr8:128600849,chr8:128600851,chr8:128623014,chr8:128608205,chr8:128608271,chr8:128608274,chr8:128616101,chr8:128616619,chr8:128634633,chr8:128634546,chr8:128641415,chr8:128641504,chr8:128591962,chr8:128592021,chr8:128591916,chr8:128600748,chr8:128616499,chr8:128601336,chr8:128616270,chr8:128600915,chr8:128619646,chr8:128600754 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 1 1 9 11923 157 ENST00000651587.1 ENST00000650971.1 downstream upstream duplicates(1),mismatches(1) CCAGAAGGAGATTAAAAAGATGCCCCTCAAGATGGCTGTGCCTGTCAGCTGCATGGAGCTTCGTTCAAGTATTTTCTGAGCCTGATGGATTTACAGTGATC...CACATTTCAGGATACTAAAAGTGGTTTTAAGGGAGGCTGTGGCTGAATGCCTCATGGATTCTTACAGCTTGGATGTCCATGGGGGACGAAGGACTGCAGCTGGCTGAGAGGGTTGAGATCTCTGTTTACTTAGATCTCTGCCAACTTCCTTTGGGTCTCCCTATGGAATGTAAGACCCCGACTCTTCCTGGTGAAGCATCTGATGCACGTTCCATCCGGCGCTCAGCTGGGCTTGAG|CTCATGTTGCATGTGGATGGCTGCAGCTCAGCAGCTGTAGAATCTGCACCACCTGTCTTATGCTGAGATCCAGCCTGGAGGAACACCCCTCTGTGGAATGTGGCACTCTCTTGGCAGAAAGAGCAAGAAAGCAGGCAGAAACTCATGAAGACTCTTAAAGGCTTCTGCTTGGGCACGGGGTATGTTTCATCTACTCACAGTCCACTGGCCAACACAAGTCACATGGTCAAACCCCAAGTCCATCCGTGAGTCAGGAGTTGTATCCTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25570 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4306 TRUE 1633 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ chr8:127860630,chr8:127860757,chr8:127860784,chr8:127877905,chr8:127901712,chr8:127901816,chr8:127901486,chr8:127907709,chr8:127907113,chr8:127907209,chr8:127907218,chr8:127798830,chr8:127841930,chr8:127843648,chr8:127843630,chr8:127841802,chr8:127877781,chr8:127801497,chr8:127841913,chr8:127843631,chr8:127841850,chr8:127841804,chr8:127841791,chr8:127877934,chr8:127901765,chr8:127843765,chr8:127877769,chr8:127843622,chr8:127878194,chr8:127822525,chr8:127822465,chr8:127843584,chr8:127822435,chr8:127799336,chr8:127843567,chr8:127843338,chr8:127829095,chr8:127843692,chr8:127857047,chr8:127843303,chr8:127798724,chr8:127907236,chr8:127858155,chr8:127907259,chr8:127858356,chr8:127907200,chr8:127860750,chr8:127858392,chr8:127860607,chr8:127907159,chr8:127907177,chr8:127858355,chr8:127858126,chr8:127858330,chr8:127801090,chr8:127801302,chr8:127801530,chr8:127801541,chr8:127822357,chr8:127822400,chr8:127822408,chr8:127822452,chr8:127829169,chr8:127841717,chr8:127841809,chr8:127841892,chr8:127841908,chr8:127841939,chr8:127843693,chr8:127843728,chr8:127843728,chr8:127843744,chr8:127843837,chr8:127843543,chr8:127843510,chr8:127843537,chr8:127843537,chr8:127843615,chr8:127853669,chr8:127853735,chr8:127857564,chr8:127858285,chr8:127858267,chr8:127858148 chr8:127588647,chr8:127588760,chr8:127588647,chr8:127579780,chr8:127579717,chr8:127579116,chr8:127579671,chr8:127589091,chr8:127588670,chr8:127588509,chr8:127588503,chr8:127582331,chr8:127579211,chr8:127579211,chr8:127579250,chr8:127579355,chr8:127579606,chr8:127579663,chr8:127579732,chr8:127579732,chr8:127579820,chr8:127579862,chr8:127579872,chr8:127579885,chr8:127579885,chr8:127579885,chr8:127579885,chr8:127579885,chr8:127579885,chr8:127582399,chr8:127582448,chr8:127582448,chr8:127582449,chr8:127582506,chr8:127582506,chr8:127582591,chr8:127582646,chr8:127582646,chr8:127582646,chr8:127582851,chr8:127582906,chr8:127588535,chr8:127588535,chr8:127588547,chr8:127588572,chr8:127588573,chr8:127588589,chr8:127588589,chr8:127588604,chr8:127588604,chr8:127588606,chr8:127588643,chr8:127588645,chr8:127588693,chr8:127579717,chr8:127579128,chr8:127579607,chr8:127579233,chr8:127582400,chr8:127582426,chr8:127582426,chr8:127582435,chr8:127582468,chr8:127579167,chr8:127579316,chr8:127579175,chr8:127579252,chr8:127579837,chr8:127579319,chr8:127579346,chr8:127582325,chr8:127582402,chr8:127579138,chr8:127582476,chr8:127579135,chr8:127579170,chr8:127582467,chr8:127579251,chr8:127585713,chr8:127585773,chr8:127582488,chr8:127588598,chr8:127588647,chr8:127588523 NA NA chr8:128872876,chr8:128873003,chr8:128873030,chr8:128890151,chr8:128913958,chr8:128914062,chr8:128913732,chr8:128919955,chr8:128919359,chr8:128919455,chr8:128919464,chr8:128811076,chr8:128854176,chr8:128855894,chr8:128855876,chr8:128854048,chr8:128890027,chr8:128813743,chr8:128854159,chr8:128855877,chr8:128854096,chr8:128854050,chr8:128854037,chr8:128890180,chr8:128914011,chr8:128856011,chr8:128890015,chr8:128855868,chr8:128890440,chr8:128834771,chr8:128834711,chr8:128855830,chr8:128834681,chr8:128811582,chr8:128855813,chr8:128855584,chr8:128841341,chr8:128855938,chr8:128869293,chr8:128855549,chr8:128810970,chr8:128919482,chr8:128870401,chr8:128919505,chr8:128870602,chr8:128919446,chr8:128872996,chr8:128870638,chr8:128872853,chr8:128919405,chr8:128919423,chr8:128870601,chr8:128870372,chr8:128870576,chr8:128813336,chr8:128813548,chr8:128813776,chr8:128813787,chr8:128834603,chr8:128834646,chr8:128834654,chr8:128834698,chr8:128841415,chr8:128853963,chr8:128854055,chr8:128854138,chr8:128854154,chr8:128854185,chr8:128855939,chr8:128855974,chr8:128855974,chr8:128855990,chr8:128856083,chr8:128855789,chr8:128855756,chr8:128855783,chr8:128855783,chr8:128855861,chr8:128865915,chr8:128865981,chr8:128869810,chr8:128870531,chr8:128870513,chr8:128870394 chr8:128600892,chr8:128601005,chr8:128600892,chr8:128592025,chr8:128591962,chr8:128591361,chr8:128591916,chr8:128601336,chr8:128600915,chr8:128600754,chr8:128600748,chr8:128594576,chr8:128591456,chr8:128591456,chr8:128591495,chr8:128591600,chr8:128591851,chr8:128591908,chr8:128591977,chr8:128591977,chr8:128592065,chr8:128592107,chr8:128592117,chr8:128592130,chr8:128592130,chr8:128592130,chr8:128592130,chr8:128592130,chr8:128592130,chr8:128594644,chr8:128594693,chr8:128594693,chr8:128594694,chr8:128594751,chr8:128594751,chr8:128594836,chr8:128594891,chr8:128594891,chr8:128594891,chr8:128595096,chr8:128595151,chr8:128600780,chr8:128600780,chr8:128600792,chr8:128600817,chr8:128600818,chr8:128600834,chr8:128600834,chr8:128600849,chr8:128600849,chr8:128600851,chr8:128600888,chr8:128600890,chr8:128600938,chr8:128591962,chr8:128591373,chr8:128591852,chr8:128591478,chr8:128594645,chr8:128594671,chr8:128594671,chr8:128594680,chr8:128594713,chr8:128591412,chr8:128591561,chr8:128591420,chr8:128591497,chr8:128592082,chr8:128591564,chr8:128591591,chr8:128594570,chr8:128594647,chr8:128591383,chr8:128594721,chr8:128591380,chr8:128591415,chr8:128594712,chr8:128591496,chr8:128597958,chr8:128598018,chr8:128594733,chr8:128600843,chr8:128600892,chr8:128600768 NA NA sense sense unknown exon/splice-site exon/splice-site duplication medium none none none 2 1 3 50295 741 ENST00000651587.1 ENST00000652749.1 downstream upstream duplicates(1),mismatches(1) CGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GGTCCCTCCTTCTGGATTGATAAGGGTGGGAACATTCAAGCTACCGATAAGACCTCTGCACCCAGCTCCTGTCCCTCCACTCCCTACGGCTCAGCTTTGAAGTTCCAAAAACCCTGCC...TTTATGGTTTCCTGTAAGCAGCCTTCTCCAAAGCCATGATTTCCTATAATGGGGGTGGAAGAAGATCTGGGGTTTCTCAGAAATTACAGCACTATCTGGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25572 NOS2::MYO18A ENSG00000007171.19::ENSG00000196535.20 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2351 TRUE 4307 TRUE 1634 NOS2 ENSG00000007171.19 protein_coding - - chr17:27756766-27800529:- chr17:27772308:- chr17:26083792-26127555:- chr17:26099334:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29103664:- chr17:27398140-27507416:- chr17:27430682:- chr17:27771485,chr17:27771485,chr17:27771494 chr17:29106838,chr17:29106833,chr17:29106836 NA NA chr17:26098511,chr17:26098511,chr17:26098520 chr17:27433856,chr17:27433851,chr17:27433854 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Flavodoxin(21%),Nitric_oxide_synthase__oxygenase_domain(100%)|Myosin_head_(motor_domain)(3%),Myosin_tail(100%) Flavodoxin_1(2%),NO_synthase(100%)|IQ(100%),Myosin_head(13%),Myosin_tail_1(100%) 12 21 15 248 393 ENST00000313735.11 ENST00000527372.7 upstream downstream duplicates(4),mismatches(3) GGCCTGGAAAACCCATGTCTGGCAGGACGAGAAGCGGAGACCCAAGAGAAGAGAGATTCCATTGAAAGTCTTGGTCAA___AGCTGTGCTCTTTGCCTGTATGCTGATGCGCAAGACAATGGCGTCCCGAGTCAGAGTCACCATCCTCTTTGCGACAGAGACAGGAAAATCAGAGGCGCTGGCCTGGGACCTGGGGGCCTTATTCAGCTGTGCCTTCAACCCCAAG|GCAGTGGAGGAGCTGCTGGAGTGCTTGGATCTGGAGAAGAGCAGCTGCTGCATGGGCCTGAGCCGG___GTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACCAGCAGGAACCTAACCCTGTTCCAAGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAG___ATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGC AWKTHVWQDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAFNPK|AVEELLECLDLEKSSCCMGLSRVFFRAGTLARLEEQRDEQTSRNLTLFQAACRGYLARQHFKKRKIQDLAIRCVQKNIKKNKGVKDWPWWKLFTTVR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 26125726 FALSE 27449271 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25573 NOS2::MYO18A ENSG00000007171.19::ENSG00000196535.20 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4307 TRUE 1634 NOS2 ENSG00000007171.19 protein_coding - - chr17:27756766-27800529:- chr17:27773161:- chr17:26083792-26127555:- chr17:26100187:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29099762:- chr17:27398140-27507416:- chr17:27426780:- chr17:27771485,chr17:27771485,chr17:27771494 chr17:29106838,chr17:29106833,chr17:29106836 NA NA chr17:26098511,chr17:26098511,chr17:26098520 chr17:27433856,chr17:27433851,chr17:27433854 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Nitric_oxide_synthase__oxygenase_domain(100%)|Myosin_head_(motor_domain)(0%),Myosin_tail(100%) NO_synthase(100%)|IQ(100%),Myosin_head(0%),Myosin_tail_1(100%) 0 1 4 261 454 ENST00000313735.11 ENST00000527372.7 upstream downstream none CTGGATTTGGCTGGTCCCTCCCATGTCTGGGAGCATCACCCCCGTGTTTCACCAGGAGATGCTGAACTACGTCCTGTCCCCTTTCTACTACTATCAG___GTAGAGGCCTGGAAAACCCATGTCTGGCAGGACGAGAAGCGGAGACCCAAGAGAAGAGAGATTCCATTGAAAGTCTTGGTCAA|GTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACC...AGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAG___ATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGCCCCTCATCGAAGTACAGCTGTCAGAGGAGCAGATCCGG WIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQDEKRRPKRREIPLKVLVk|cssgrapwhgwrssgmnk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 26125726 FALSE 27449271 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25574 DHRS7B::TNFRSF13B ENSG00000109016.18::ENSG00000240505.9 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4308 TRUE 1635 DHRS7B ENSG00000109016.18 protein_coding + + chr17:21123364-21193265:+ chr17:21126991:+ chr17:21026677-21096578:+ chr17:21030304:+ TNFRSF13B ENSG00000240505.9 protein_coding - - chr17:16929816-16972118:- chr17:16940511:- chr17:16833130-16875432:- chr17:16843825:- chr17:21145932,chr17:21145929,chr17:21145929 chr17:16948529,chr17:16948532,chr17:16948528 NA NA chr17:21049245,chr17:21049242,chr17:21049242 chr17:16851843,chr17:16851846,chr17:16851842 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none none none 1 4 1 45 116 ENST00000582161.5 ENST00000584950.5 downstream downstream duplicates(1),mismatches(2) GTCACTTCCGAGGCGGGAGGATGAAGTTGATTGACTATGGTCTCTCCGGCTACCAG|CTCTCCCGGGGCTGAAGCTGAGTGCAGATCAGGTGGCCCTGGTCTACAGCACGCTGGGGCTCTGCCTGTGTGCCGTCCTCTGCTGCTTCCTGGTGGCGGTGGCCTGCTTCCTCAAGAAGAGGGGGGATCCCTGCTCCTGCCAGCCCCGCTCAAGGCCCCGTCAAAGTCCGGCCAAGTCTTCCCAGG___ATCACGCGATGGAAGCCGGCAGCCCTGTGAGCACATCCCCCGAGCCAGTGGAGACCTGCAGCTTCTGCTTCCCTGAGTGCAGGGCGCCCACGCAGGAGAGCGCAGTCACGCCTGGGACCCCCGA MVSPATs|spgaeaecrsggpglqhagalpvcrplllpggggllpqeeggslllpaplkapsksgqvfpgsrdgsrqpcehiprasgdlqlllp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25575 DHRS7B::TNFRSF13B ENSG00000109016.18::ENSG00000240505.9 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4308 TRUE 1635 DHRS7B ENSG00000109016.18 protein_coding + + chr17:21123364-21193265:+ chr17:21126991:+ chr17:21026677-21096578:+ chr17:21030304:+ TNFRSF13B ENSG00000240505.9 protein_coding - - chr17:16929816-16972118:- chr17:16932937:- chr17:16833130-16875432:- chr17:16836251:- chr17:21145932,chr17:21145929,chr17:21145929 chr17:16948529,chr17:16948532,chr17:16948528 NA NA chr17:21049245,chr17:21049242,chr17:21049242 chr17:16851843,chr17:16851846,chr17:16851842 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site inversion medium none none none 0 1 1 45 8 ENST00000578426.5 ENST00000584950.5 downstream downstream none TGAAGTTGATTGACTATGGTCTCTCCGGCTACCAG|AAAACTGGGCATCTTCATGGTCCTAGAAGGATCCCAGGAGGCTGATCCTATAGAGACGTCTGGTTC...GGGCAAGTGTGTGTCTGTCTTAGGGCATTTGGGAACAATGGGCCTCTCTGTCCAGGTCCCCCTGTGTTCAAGTCCTCAGGAAGGAGCCTACTCCTGGTCCA...GAGCACCCGGATATCCTGCCCACCCAGGGaCAAGGCAACATCATCATTACTAAGTATGAGCAG___GGACGCTGAGCTGGGGCAGCAGTGGACACAGAGCATGA MVSPATr|klgifmvlegsqeadpietsg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25576 DHRS7B::TNFRSF13B ENSG00000109016.18::ENSG00000240505.9 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4308 TRUE 1635 DHRS7B ENSG00000109016.18 protein_coding + + chr17:21123364-21193265:+ chr17:21126991:+ chr17:21026677-21096578:+ chr17:21030304:+ TNFRSF13B ENSG00000240505.9 protein_coding - - chr17:16929816-16972118:- chr17:16933176:- chr17:16833130-16875432:- chr17:16836490:- chr17:21145932,chr17:21145929,chr17:21145929 chr17:16948529,chr17:16948532,chr17:16948528 NA NA chr17:21049245,chr17:21049242,chr17:21049242 chr17:16851843,chr17:16851846,chr17:16851842 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none none none 0 1 1 45 15 ENST00000578426.5 ENST00000584950.5 downstream downstream none GTTGATTGACTATGGTCTCTCCGGCTACCAG|GAAAACGAAGCCCCCTCCTGTATTGACAGCTGGGAATTGTGGAGTCCACCGTCCTCCACCTGAGACGAGC...CTGTGCCTGCTGCGTGGGAGACTGGTCCAGGGACAGGGAATCAGGAGTGGTTGGTGAGACAGAGGGGGTGGCCTGCGGGCCCGGGCGGTGGTAAGTGGGCC MVSPATr|KTKPPPVLTAGNCGVHRPPPET NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25577 DHRS7B::TNFRSF13B ENSG00000109016.18::ENSG00000240505.9 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4308 TRUE 1635 DHRS7B ENSG00000109016.18 protein_coding + + chr17:21123364-21193265:+ chr17:21126991:+ chr17:21026677-21096578:+ chr17:21030304:+ TNFRSF13B ENSG00000240505.9 protein_coding - - chr17:16929816-16972118:- chr17:16941477:- chr17:16833130-16875432:- chr17:16844791:- chr17:21145932,chr17:21145929,chr17:21145929 chr17:16948529,chr17:16948532,chr17:16948528 NA NA chr17:21049245,chr17:21049242,chr17:21049242 chr17:16851843,chr17:16851846,chr17:16851842 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 0 1 1 45 21 ENST00000578426.5 ENST00000581616.2 downstream downstream none GTTGATTGACTATGGTCTCTCCGGCTACCAG|CGCCTAGAGGATGCCCAGCTCCAGGGACAAGGAAGAGCTTTTGGGATAAGGAGAACTTCCAAGGGGAGGG...CACCTGGGCTGAGTCTGTCTCTGGCATCCAAACCTGGAGGCACAAGTCCTGAGTCATAGGGTGGCCAGGTGCCCTGATGCCCAAAGCCCTCCTGGTTGGCA MVSPATs|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25578 ENSG00000228033::ENSG00000231918 ENSG00000228033.6::ENSG00000231918.1 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000228033 ENSG00000228033.6 lncRNA - - chr2:52722671-52961452:- chr2:52897243:- chr2:52949809-53188590:- chr2:53124381:- ENSG00000231918 ENSG00000231918.1 lncRNA + - chr2:51032601-52407917:+ chr2:52314234:- chr2:51259739-52635055:+ chr2:52541372:- chr2:52746417 chr2:52393143 NA NA chr2:52973555 chr2:52620281 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 1 1 2 110 4 ENST00000421575.6 unknown upstream downstream duplicates(2) TGAAGAAAGTGTCTGTTTCTCCTTTGCCTTCCGCCAGGATTGTAGGTTTCCTGAGGCCTCCCCAGCCTTTCAGAA___TTCTATCAGATTTCGCTTCAAAAATT...CTAGGTACATAAACATCTGAG___GTGTTTATTGGAGCTCTTTGCCTAGAACTGATAATTGGATTCATGGTATTCTGGAGAACAAG|TCATGAGAAGATGCTCCTCTCCTCCCAACTACGTGACTGCAGTTGCCATGCTCACCTCCC...AAGATGAAAAACAATTATATTTGAAAAGAATCTGTACTTTAGTAATATCCCCAGTGTGTCTTGTGCGCATTAAAATGTGAAATGCACTGCTTTAGACCTGCACAGTGCAACGTGGCAGCCAATAGTCATAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25581 TMEM132E::PIK3R5 ENSG00000181291.8::ENSG00000141506.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM132E ENSG00000181291.8 protein_coding + + chr17:34579487-34639318:+ chr17:34630151:+ chr17:32906506-32966337:+ chr17:32957170:+ PIK3R5 ENSG00000141506.15 protein_coding - + chr17:8878911-8965712:- chr17:8957384:+ chr17:8782228-8869029:- chr17:8860701:+ chr17:34634235,chr17:34634234 chr17:8956428,chr17:8956424 NA NA chr17:32961254,chr17:32961253 chr17:8859745,chr17:8859741 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Mature_oligodendrocyte_transmembrane_protein__TMEM132D__N-term(100%),Transmembrane_protein_family_132(13%)| TMEM132(1%),TMEM132D_N(100%)| 1 1 1 106 5 ENST00000321639.7 unknown downstream upstream none GATCTTGCAGCTGGACTTTGAAATGGAGAACTTCACCAGCCAGTCAGTCAAGCGGAGGATCATGTGGCACATTGACTACCGTGGCCACGGCGCCCTGCCTG...GGACACAGAGATCATCAACACGGCCATTCTGACTGGCCGGACAGTGGCCATCCCTGTCAAGGTCATTGCCATCGAGGTGAATGGCCTCGTCCTGGACATCTCCGCCCTAGTGGAATGCGAGTCTGACAATGAAGACATCATCAAG|AGAATGACACCCAGTTGAGAAGTCTTCACCTTTTTCAAAGGACACTGCTCGTCAAACATCTGAAGACAGATACTACTTCTCCTCTGTCTTCTCTTCTTGGAGAAAAACCTCGCTACTTCTTAATTACTTCATATTCTGTCATCGCTATCCTGGTCACCTATCTCTG DTEIINTAILTGRTVAIPVKVIAIEVNGLVLDISALVECESDNEDIIK|rmtps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25587 LINC02964::CASC11 ENSG00000286122.1::ENSG00000249375.8 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125987903:+ chr8:126660571-127021174:+ chr8:127000147:+ CASC11 ENSG00000249375.8 lncRNA - + chr8:127686343-127738987:- chr8:127727022:+ chr8:128698588-128751233:- chr8:128739268:+ chr8:125988807,chr8:126000856,chr8:126000857,chr8:126000787,chr8:126000944 chr8:127696724,chr8:127706056,chr8:127706084,chr8:127706019,chr8:127706019 NA NA chr8:127001051,chr8:127013100,chr8:127013101,chr8:127013031,chr8:127013188 chr8:128708969,chr8:128718301,chr8:128718329,chr8:128718264,chr8:128718264 NA NA sense antisense unknown intron intron deletion/5'-5' medium none none none 3 4 9 62 44 unknown unknown downstream upstream duplicates(3),low_entropy(1),mismappers(1) GCTTGTTGTAACCGTGTTGCATGTGCCTGCCCATCAGACACCCAATCTTGCAAGACCATCATTAAAAGTCTCACTTTAGCTGTTCTCTGAGCCCATTGGTT...GCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACCTCTGACCTCGCGATCTGCCTGCCT...CGGCCTCTGAGTCTATTCTTTGGGTTTGGATGGGTGAGTTTGTTTCTCACAACCTGGTGGCCAGTACGGGGAACTCTGTGCCTTCATGCAGTGGGACTCTGGCTGAGAGGGGAGACTCGTCCCATTTGATTTAGGTGGCCTACTCTCTCCTTGTGTCCCGGTTCCCCACATAAGCCAGAGACAAACCTGAGACTGTTATTCAGGAGACAACAGAATTGACACAGGGAGAAAAGCAGGCACTGCAGCAACCAGGCAACCTTGTGCATGAGCCAAGGTAGGAAAATTGGACTGTAAGCACTGC|AGAAGAATGAGGGGATGGTTTAAACTCTCAAGGGAAGGGGAAAGGATCATGAAAAGCTCCTACAGGAAGATGCTTGAGTTGGATTACTAAGACATATGAGCAGAGATGGCAGGCTGGCAGCCTGAGGGCCACCTCTGCCCATAGACATGCTTTGCTTCTCCATATCATTTTTTTTCCCAAC...CCTGGATTTCCACCTTCCCTGAAAAACTGGAAGCATTTCCACCCATGGGCCCATATTTCAGGGTAACCACCAGAGCAGGTGCCAAATGGGAGCCACCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25588 PVT1::ANKRD27 ENSG00000249859.14::ENSG00000105186.16 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ANKRD27 ENSG00000105186.16 protein_coding - + chr19:32597006-32676597:- chr19:32653396:+ chr19:33087912-33167503:- chr19:33144302:+ chr8:127871990 chr19:32648165 NA NA chr8:128884236 chr19:33139071 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' medium none none none 4 2 9 50295 63 ENST00000651587.1 unknown downstream upstream duplicates(5),mismatches(2) GCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GCAAAGGGGCCAGTCTCCTGGTGCACCTGGGAAACCTGGAGGACTTTCAACTCTGCACTAAAGCCCCAGGGACGCAGACCTGCCCAGCCTGCTCTGAGGACGCCACAG___TTCAAACCCTCAGGCACCTCACATATCTAAGTAAAGTCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25589 CASC11::LINC00861 ENSG00000249375.8::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733825:- chr8:128698588-128751233:- chr8:128746071:- LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125946182:- chr8:126871965-127305033:- chr8:126958426:- chr8:127705359,chr8:127720725,chr8:127697706,chr8:127724783,chr8:127724783,chr8:127724276,chr8:127697528,chr8:127714911,chr8:127714912,chr8:127714912,chr8:127714912,chr8:127714912,chr8:127715025,chr8:127715176,chr8:127715176,chr8:127715352,chr8:127715452,chr8:127715453,chr8:127715561,chr8:127716113,chr8:127714689,chr8:127716730,chr8:127714784,chr8:127714904,chr8:127714904,chr8:127714904,chr8:127721300,chr8:127705056,chr8:127700044,chr8:127702459,chr8:127705239,chr8:127697510,chr8:127707808,chr8:127696945,chr8:127707808,chr8:127707808,chr8:127705448,chr8:127705446,chr8:127705458,chr8:127706023,chr8:127706088,chr8:127724786,chr8:127724787,chr8:127719286,chr8:127719536,chr8:127692614,chr8:127690785,chr8:127690788,chr8:127690785,chr8:127717517,chr8:127717957,chr8:127717188,chr8:127718226,chr8:127717126,chr8:127706095,chr8:127714104,chr8:127706122,chr8:127706022,chr8:127703693,chr8:127711172,chr8:127728783,chr8:127703749,chr8:127704915,chr8:127719260,chr8:127719258,chr8:127719289,chr8:127719289,chr8:127719289,chr8:127719300,chr8:127719306,chr8:127719320,chr8:127719320,chr8:127719320,chr8:127719320,chr8:127719335,chr8:127719335,chr8:127719387,chr8:127719387,chr8:127719387,chr8:127719936,chr8:127719992,chr8:127719992,chr8:127720000,chr8:127720147,chr8:127720147,chr8:127720366,chr8:127720562,chr8:127720562,chr8:127720562,chr8:127720562,chr8:127720581,chr8:127720581,chr8:127720594,chr8:127720594,chr8:127720604,chr8:127720604,chr8:127720783,chr8:127720783,chr8:127720783,chr8:127718879,chr8:127721101,chr8:127721101,chr8:127721101,chr8:127721233,chr8:127721233,chr8:127721233,chr8:127721311,chr8:127721842,chr8:127721911,chr8:127721914,chr8:127721956,chr8:127721956,chr8:127724055,chr8:127724062,chr8:127724062,chr8:127724092,chr8:127724111,chr8:127724709,chr8:127724711,chr8:127724711,chr8:127724717,chr8:127724717,chr8:127724723,chr8:127724770,chr8:127724832,chr8:127724832,chr8:127723284,chr8:127723284,chr8:127726558,chr8:127726808,chr8:127726847,chr8:127727019,chr8:127727020,chr8:127727020,chr8:127727020,chr8:127727020,chr8:127727020,chr8:127727022,chr8:127727037,chr8:127726375,chr8:127731053,chr8:127731053,chr8:127731104,chr8:127731104,chr8:127731104,chr8:127731145,chr8:127731147,chr8:127731413,chr8:127731413,chr8:127729259,chr8:127729259,chr8:127731767,chr8:127731767,chr8:127731767,chr8:127731986,chr8:127731986,chr8:127731986,chr8:127731986,chr8:127732417,chr8:127732417,chr8:127729395,chr8:127733157,chr8:127711230,chr8:127703803,chr8:127705403,chr8:127704709,chr8:127703663,chr8:127704676,chr8:127705375,chr8:127714717,chr8:127705974,chr8:127714717,chr8:127687040,chr8:127731158,chr8:127690835,chr8:127689816,chr8:127705363,chr8:127705977,chr8:127714215,chr8:127714210,chr8:127727023,chr8:127727022,chr8:127726507,chr8:127727024,chr8:127727029,chr8:127726557,chr8:127727023,chr8:127727055,chr8:127727021,chr8:127727022,chr8:127727028,chr8:127706019,chr8:127692244,chr8:127688957,chr8:127688957,chr8:127689670,chr8:127689670,chr8:127689780,chr8:127689841,chr8:127689842,chr8:127689929,chr8:127689966,chr8:127690065,chr8:127690065,chr8:127690104,chr8:127690104,chr8:127690721,chr8:127690721,chr8:127690762,chr8:127690762,chr8:127690762,chr8:127690888,chr8:127691005,chr8:127691022,chr8:127691121,chr8:127691532,chr8:127691532,chr8:127692013,chr8:127692016,chr8:127692016,chr8:127692016,chr8:127692249,chr8:127692593,chr8:127692606,chr8:127692606,chr8:127692607,chr8:127719905,chr8:127720420,chr8:127724220,chr8:127724208,chr8:127720655,chr8:127711466,chr8:127694186,chr8:127694514,chr8:127695149,chr8:127731147,chr8:127707238,chr8:127705950,chr8:127705462,chr8:127702235,chr8:127704709,chr8:127703386,chr8:127704690,chr8:127706114,chr8:127696724,chr8:127696743,chr8:127696773,chr8:127696773,chr8:127696773,chr8:127696849,chr8:127696865,chr8:127697415,chr8:127697415,chr8:127697440,chr8:127697454,chr8:127697468,chr8:127697474,chr8:127697520,chr8:127699015,chr8:127699402,chr8:127699402,chr8:127699402,chr8:127721241,chr8:127715700,chr8:127721116,chr8:127720461,chr8:127722856,chr8:127720714,chr8:127709158,chr8:127731148,chr8:127697512,chr8:127731122,chr8:127727188,chr8:127705996,chr8:127706036,chr8:127706036,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706056,chr8:127706084,chr8:127706084,chr8:127706084,chr8:127706084,chr8:127706126,chr8:127706168,chr8:127702153,chr8:127702153,chr8:127702332,chr8:127702904,chr8:127703302,chr8:127703474,chr8:127703474,chr8:127703474,chr8:127703502,chr8:127703502,chr8:127703584,chr8:127703584,chr8:127703584,chr8:127703600,chr8:127703600,chr8:127703600,chr8:127703600,chr8:127703613,chr8:127703613,chr8:127703628,chr8:127703628,chr8:127703628,chr8:127703646,chr8:127703646,chr8:127703646,chr8:127703646,chr8:127703650,chr8:127703663,chr8:127703663,chr8:127703663,chr8:127703663,chr8:127703671,chr8:127703671,chr8:127703686,chr8:127703707,chr8:127703707,chr8:127703711,chr8:127703721,chr8:127703721,chr8:127703787,chr8:127703787,chr8:127703787,chr8:127703788,chr8:127703817,chr8:127703820,chr8:127703820,chr8:127703820,chr8:127704116,chr8:127704145,chr8:127704183,chr8:127704619,chr8:127704619,chr8:127704619,chr8:127704668,chr8:127704699,chr8:127704699,chr8:127704788,chr8:127704952,chr8:127704952,chr8:127704952,chr8:127704952,chr8:127704952,chr8:127704952,chr8:127704952,chr8:127704999,chr8:127704999,chr8:127704999,chr8:127704999,chr8:127705092,chr8:127705109,chr8:127705109,chr8:127705199,chr8:127705199,chr8:127705222,chr8:127705222,chr8:127705222,chr8:127705296,chr8:127705296,chr8:127705296,chr8:127705296,chr8:127705296,chr8:127705296,chr8:127705296,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705300,chr8:127705313,chr8:127705313,chr8:127705313,chr8:127705313,chr8:127705313,chr8:127705331,chr8:127705356,chr8:127705356,chr8:127705356,chr8:127705376,chr8:127705376,chr8:127705479,chr8:127705479,chr8:127705491,chr8:127705495,chr8:127705495,chr8:127705495,chr8:127705512,chr8:127705512,chr8:127705533,chr8:127705533,chr8:127705717,chr8:127705977,chr8:127705980,chr8:127705980,chr8:127705980,chr8:127705980,chr8:127705980,chr8:127720522,chr8:127721884,chr8:127720509,chr8:127726986,chr8:127726564,chr8:127726377,chr8:127726381,chr8:127726377,chr8:127726382,chr8:127721894,chr8:127704691,chr8:127705974,chr8:127705056,chr8:127705382,chr8:127701795,chr8:127729336,chr8:127690695,chr8:127689803,chr8:127697514,chr8:127690652,chr8:127697519,chr8:127707778,chr8:127707925,chr8:127714690,chr8:127703340,chr8:127703835,chr8:127724673,chr8:127705340,chr8:127724738,chr8:127705993,chr8:127724720,chr8:127724732,chr8:127705992,chr8:127724732,chr8:127724720,chr8:127703685,chr8:127724727,chr8:127706029,chr8:127724199,chr8:127730937,chr8:127724783,chr8:127690872,chr8:127704703,chr8:127692609,chr8:127731154,chr8:127706015,chr8:127731101,chr8:127705344,chr8:127706150,chr8:127720866,chr8:127719279,chr8:127719299,chr8:127719265,chr8:127720866,chr8:127720817,chr8:127714170,chr8:127711219,chr8:127710951,chr8:127710951,chr8:127711162,chr8:127711223,chr8:127711264,chr8:127711313,chr8:127711323,chr8:127711335,chr8:127712614,chr8:127714118,chr8:127714167,chr8:127714167,chr8:127714201,chr8:127714321 chr8:126186246,chr8:126190256,chr8:126190563,chr8:126216202,chr8:126216349,chr8:126216445,chr8:126216445,chr8:126190411,chr8:126190403,chr8:126216327,chr8:126190411,chr8:125948774,chr8:126190384,chr8:126190462,chr8:125948731,chr8:126190260,chr8:126190373,chr8:125948798,chr8:125948678,chr8:126216274,chr8:126216371,chr8:125948864,chr8:126130654,chr8:126190404,chr8:125948753,chr8:125948775,chr8:126226070,chr8:126231779,chr8:126231813,chr8:126232082,chr8:126231594,chr8:126231668,chr8:126231741,chr8:126231813,chr8:126231751,chr8:126231752,chr8:126232577,chr8:126232571,chr8:126232587,chr8:126232677,chr8:126232642,chr8:126233654,chr8:126233712,chr8:126235454,chr8:126235648,chr8:126236485,chr8:126236533,chr8:126236560,chr8:126236641,chr8:125970469,chr8:125970463,chr8:125970468,chr8:126057869,chr8:125970522,chr8:126268100,chr8:126268100,chr8:126268098,chr8:126268492,chr8:126268714,chr8:126267874,chr8:126269486,chr8:126271716,chr8:126271737,chr8:126274553,chr8:126166312,chr8:126251394,chr8:126023444,chr8:126166268,chr8:126225895,chr8:126166280,chr8:126190382,chr8:126225979,chr8:126023539,chr8:126166166,chr8:126225921,chr8:126166277,chr8:126190405,chr8:126225984,chr8:126251310,chr8:126023378,chr8:126190446,chr8:126166233,chr8:125954670,chr8:126190740,chr8:126096025,chr8:126166253,chr8:126190530,chr8:126251441,chr8:126274537,chr8:126166319,chr8:126190538,chr8:126166327,chr8:126023442,chr8:126166267,chr8:126023442,chr8:126166278,chr8:126190463,chr8:126166250,chr8:126166267,chr8:126166298,chr8:126190539,chr8:126251450,chr8:126166328,chr8:126190404,chr8:126235505,chr8:126251310,chr8:126251444,chr8:126118790,chr8:126190341,chr8:126063370,chr8:126190462,chr8:126166249,chr8:126233546,chr8:126216232,chr8:126023609,chr8:126216260,chr8:126023574,chr8:126216312,chr8:126023448,chr8:126155279,chr8:126233653,chr8:126216276,chr8:126233496,chr8:126155359,chr8:126216402,chr8:126155295,chr8:126216274,chr8:126023580,chr8:126023478,chr8:125987535,chr8:125987568,chr8:125987903,chr8:125987904,chr8:125987902,chr8:125987903,chr8:125987894,chr8:125987890,chr8:125987905,chr8:125987905,chr8:126118620,chr8:126079216,chr8:126161051,chr8:126182601,chr8:126079198,chr8:126155925,chr8:126079167,chr8:126079161,chr8:126079570,chr8:126142556,chr8:126079098,chr8:126156019,chr8:125967392,chr8:126160896,chr8:125967538,chr8:125967547,chr8:126079202,chr8:126155908,chr8:126161049,chr8:126079098,chr8:126156019,chr8:126128353,chr8:126114666,chr8:125948015,chr8:125948765,chr8:125948747,chr8:125948587,chr8:125948637,chr8:125948627,chr8:125948636,chr8:125948670,chr8:125948670,chr8:125948672,chr8:126200281,chr8:125967680,chr8:125968135,chr8:125967361,chr8:125970509,chr8:125970363,chr8:125980726,chr8:125980854,chr8:125987904,chr8:125987903,chr8:125987425,chr8:125987905,chr8:125987904,chr8:125987477,chr8:125987903,chr8:125987904,chr8:125987902,chr8:125987890,chr8:125987904,chr8:126000944,chr8:126004350,chr8:126274512,chr8:126160875,chr8:126236948,chr8:126128796,chr8:125967418,chr8:126160913,chr8:125967405,chr8:126236937,chr8:126160901,chr8:126225896,chr8:126274597,chr8:126274624,chr8:126056768,chr8:126226039,chr8:126161103,chr8:126225908,chr8:126274611,chr8:126128796,chr8:126056818,chr8:126236516,chr8:126161103,chr8:126236582,chr8:126041642,chr8:126128873,chr8:126045782,chr8:126045782,chr8:126056754,chr8:126161167,chr8:126236518,chr8:126160969,chr8:126236989,chr8:126128842,chr8:126236486,chr8:126023363,chr8:126023409,chr8:126023418,chr8:126023417,chr8:126023503,chr8:126025815,chr8:126087470,chr8:126028698,chr8:126157454,chr8:126048016,chr8:126054022,chr8:126055844,chr8:126055896,chr8:126055867,chr8:126055831,chr8:126056825,chr8:126056805,chr8:126056898,chr8:125988807,chr8:126190369,chr8:126216379,chr8:126231766,chr8:126128792,chr8:126216245,chr8:126079203,chr8:126190549,chr8:126231633,chr8:126231511,chr8:126231725,chr8:126231727,chr8:126231724,chr8:126231711,chr8:126216401,chr8:126190539,chr8:126231624,chr8:126128874,chr8:126063304,chr8:126063260,chr8:126063260,chr8:126063342,chr8:126063385,chr8:126063373,chr8:126066495,chr8:126079159,chr8:126079617,chr8:126079069,chr8:126087632,chr8:125948718,chr8:125948724,chr8:126155355,chr8:126232574,chr8:126268059,chr8:125948776,chr8:125970469,chr8:126000856,chr8:126121665,chr8:126155372,chr8:126161049,chr8:126268059,chr8:125948788,chr8:126000857,chr8:126161049,chr8:126056808,chr8:126268151,chr8:125948759,chr8:126000859,chr8:126232135,chr8:126267911,chr8:126268192,chr8:126231546,chr8:125948697,chr8:126155295,chr8:126155266,chr8:126160942,chr8:125948619,chr8:125970318,chr8:126055884,chr8:125948619,chr8:125970318,chr8:126055887,chr8:126155221,chr8:125948878,chr8:126056774,chr8:125948860,chr8:126155458,chr8:126161134,chr8:126271683,chr8:125948840,chr8:126056807,chr8:126121571,chr8:125948799,chr8:126271674,chr8:125948831,chr8:126121583,chr8:126155426,chr8:125948827,chr8:126155424,chr8:126267956,chr8:125948697,chr8:126155295,chr8:126268065,chr8:125948715,chr8:126000904,chr8:126232610,chr8:126268000,chr8:125948716,chr8:125948717,chr8: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NA NA chr8:128717604,chr8:128732971,chr8:128709951,chr8:128737029,chr8:128737029,chr8:128736522,chr8:128709773,chr8:128727156,chr8:128727157,chr8:128727157,chr8:128727157,chr8:128727157,chr8:128727270,chr8:128727421,chr8:128727421,chr8:128727598,chr8:128727698,chr8:128727699,chr8:128727807,chr8:128728359,chr8:128726934,chr8:128728976,chr8:128727029,chr8:128727149,chr8:128727149,chr8:128727149,chr8:128733546,chr8:128717301,chr8:128712289,chr8:128714704,chr8:128717484,chr8:128709755,chr8:128720053,chr8:128709190,chr8:128720053,chr8:128720053,chr8:128717693,chr8:128717691,chr8:128717703,chr8:128718268,chr8:128718333,chr8:128737032,chr8:128737033,chr8:128731532,chr8:128731782,chr8:128704859,chr8:128703030,chr8:128703033,chr8:128703030,chr8:128729763,chr8:128730203,chr8:128729434,chr8:128730472,chr8:128729372,chr8:128718340,chr8:128726349,chr8:128718367,chr8:128718267,chr8:128715938,chr8:128723417,chr8:128741029,chr8:128715994,chr8:128717160,chr8:128731506,chr8:128731504,chr8:128731535,chr8:128731535,chr8:128731535,chr8:128731546,chr8:128731552,chr8:128731566,chr8:128731566,chr8:128731566,chr8:128731566,chr8:128731581,chr8:128731581,chr8:128731633,chr8:128731633,chr8:128731633,chr8:128732182,chr8:128732238,chr8:128732238,chr8:128732246,chr8:128732393,chr8:128732393,chr8:128732612,chr8:128732808,chr8:128732808,chr8:128732808,chr8:128732808,chr8:128732827,chr8:128732827,chr8:128732840,chr8:128732840,chr8:128732850,chr8:128732850,chr8:128733029,chr8:128733029,chr8:128733029,chr8:128731125,chr8:128733347,chr8:128733347,chr8:128733347,chr8:128733479,chr8:128733479,chr8:128733479,chr8:128733557,chr8:128734088,chr8:128734157,chr8:128734160,chr8:128734202,chr8:128734202,chr8:128736301,chr8:128736308,chr8:128736308,chr8:128736338,chr8:128736357,chr8:128736955,chr8:128736957,chr8:128736957,chr8:128736963,chr8:128736963,chr8:128736969,chr8:128737016,chr8:128737078,chr8:128737078,chr8:128735530,chr8:128735530,chr8:128738804,chr8:128739054,chr8:128739093,chr8:128739265,chr8:128739266,chr8:128739266,chr8:128739266,chr8:128739266,chr8:128739266,chr8:128739268,chr8:128739283,chr8:128738621,chr8:128743299,chr8:128743299,chr8:128743350,chr8:128743350,chr8:128743350,chr8:128743391,chr8:128743393,chr8:128743659,chr8:128743659,chr8:128741505,chr8:128741505,chr8:128744013,chr8:128744013,chr8:128744013,chr8:128744232,chr8:128744232,chr8:128744232,chr8:128744232,chr8:128744663,chr8:128744663,chr8:128741641,chr8:128745403,chr8:128723475,chr8:128716048,chr8:128717648,chr8:128716954,chr8:128715908,chr8:128716921,chr8:128717620,chr8:128726962,chr8:128718219,chr8:128726962,chr8:128699285,chr8:128743404,chr8:128703080,chr8:128702061,chr8:128717608,chr8:128718222,chr8:128726460,chr8:128726455,chr8:128739269,chr8:128739268,chr8:128738753,chr8:128739270,chr8:128739275,chr8:128738803,chr8:128739269,chr8:128739301,chr8:128739267,chr8:128739268,chr8:128739274,chr8:128718264,chr8:128704489,chr8:128701202,chr8:128701202,chr8:128701915,chr8:128701915,chr8:128702025,chr8:128702086,chr8:128702087,chr8:128702174,chr8:128702211,chr8:128702310,chr8:128702310,chr8:128702349,chr8:128702349,chr8:128702966,chr8:128702966,chr8:128703007,chr8:128703007,chr8:128703007,chr8:128703133,chr8:128703250,chr8:128703267,chr8:128703366,chr8:128703777,chr8:128703777,chr8:128704258,chr8:128704261,chr8:128704261,chr8:128704261,chr8:128704494,chr8:128704838,chr8:128704851,chr8:128704851,chr8:128704852,chr8:128732151,chr8:128732666,chr8:128736466,chr8:128736454,chr8:128732901,chr8:128723711,chr8:128706431,chr8:128706759,chr8:128707394,chr8:128743393,chr8:128719483,chr8:128718195,chr8:128717707,chr8:128714480,chr8:128716954,chr8:128715631,chr8:128716935,chr8:128718359,chr8:128708969,chr8:128708988,chr8:128709018,chr8:128709018,chr8:128709018,chr8:128709094,chr8:128709110,chr8:128709660,chr8:128709660,chr8:128709685,chr8:128709699,chr8:128709713,chr8:128709719,chr8:128709765,chr8:128711260,chr8:128711647,chr8:128711647,chr8:128711647,chr8:128733487,chr8:128727946,chr8:128733362,chr8:128732707,chr8:128735102,chr8:128732960,chr8:128721403,chr8:128743394,chr8:128709757,chr8:128743368,chr8:128739434,chr8:128718241,chr8:128718281,chr8:128718281,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718301,chr8:128718329,chr8:128718329,chr8:128718329,chr8:128718329,chr8:128718371,chr8:128718413,chr8:128714398,chr8:128714398,chr8:128714577,chr8:128715149,chr8:128715547,chr8:128715719,chr8:128715719,chr8:128715719,chr8:128715747,chr8:128715747,chr8:128715829,chr8:128715829,chr8:128715829,chr8:128715845,chr8:128715845,chr8:128715845,chr8:128715845,chr8:128715858,chr8:128715858,chr8:128715873,chr8:128715873,chr8:128715873,chr8:128715891,chr8:128715891,chr8:128715891,chr8:128715891,chr8:128715895,chr8:128715908,chr8:128715908,chr8:128715908,chr8:128715908,chr8:128715916,chr8:128715916,chr8:128715931,chr8:128715952,chr8:128715952,chr8:128715956,chr8:128715966,chr8:128715966,chr8:128716032,chr8:128716032,chr8:128716032,chr8:128716033,chr8:128716062,chr8:128716065,chr8:128716065,chr8:128716065,chr8:128716361,chr8:128716390,chr8:128716428,chr8:128716864,chr8:128716864,chr8:128716864,chr8:128716913,chr8:128716944,chr8:128716944,chr8:128717033,chr8:128717197,chr8:128717197,chr8:128717197,chr8:128717197,chr8:128717197,chr8:128717197,chr8:128717197,chr8:128717244,chr8:128717244,chr8:128717244,chr8:128717244,chr8:128717337,chr8:128717354,chr8:128717354,chr8:128717444,chr8:128717444,chr8:128717467,chr8:128717467,chr8:128717467,chr8:128717541,chr8:128717541,chr8:128717541,chr8:128717541,chr8:128717541,chr8:128717541,chr8:128717541,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717545,chr8:128717558,chr8:128717558,chr8:128717558,chr8:128717558,chr8:128717558,chr8:128717576,chr8:128717601,chr8:128717601,chr8:128717601,chr8:128717621,chr8:128717621,chr8:128717724,chr8:128717724,chr8:128717736,chr8:128717740,chr8:128717740,chr8:128717740,chr8:128717757,chr8:128717757,chr8:128717778,chr8:128717778,chr8:128717962,chr8:128718222,chr8:128718225,chr8:128718225,chr8:128718225,chr8:128718225,chr8:128718225,chr8:128732768,chr8:128734130,chr8:128732755,chr8:128739232,chr8:128738810,chr8:128738623,chr8:128738627,chr8:128738623,chr8:128738628,chr8:128734140,chr8:128716936,chr8:128718219,chr8:128717301,chr8:128717627,chr8:128714040,chr8:128741582,chr8:128702940,chr8:128702048,chr8:128709759,chr8:128702897,chr8:128709764,chr8:128720023,chr8:128720170,chr8:128726935,chr8:128715585,chr8:128716080,chr8:128736919,chr8:128717585,chr8:128736984,chr8:128718238,chr8:128736966,chr8:128736978,chr8:128718237,chr8:128736978,chr8:128736966,chr8:128715930,chr8:128736973,chr8:128718274,chr8:128736445,chr8:128743183,chr8:128737029,chr8:128703117,chr8:128716948,chr8:128704854,chr8:128743400,chr8:128718260,chr8:128743347,chr8:128717589,chr8:128718395,chr8:128733112,chr8:128731525,chr8:128731545,chr8:128731511,chr8:128733112,chr8:128733063,chr8:128726415,chr8:128723464,chr8:128723196,chr8:128723196,chr8:128723407,chr8:128723468,chr8:128723509,chr8:128723558,chr8:128723568,chr8:128723580,chr8:128724859,chr8:128726363,chr8:128726412,chr8:128726412,chr8:128726446,chr8:128726566 chr8:127198490,chr8:127202500,chr8:127202807,chr8:127228446,chr8:127228593,chr8:127228689,chr8:127228689,chr8:127202655,chr8:127202647,chr8:127228571,chr8:127202655,chr8:126961018,chr8:127202628,chr8:127202706,chr8:126960975,chr8:127202504,chr8:127202617,chr8:126961042,chr8:126960922,chr8:127228518,chr8:127228615,chr8:126961108,chr8:127142898,chr8:127202648,chr8:126960997,chr8:126961019,chr8:127238314,chr8:127244023,chr8:127244057,chr8:127244326,chr8:127243838,chr8:127243912,chr8:127243985,chr8:127244057,chr8:127243995,chr8:127243996,chr8:127244821,chr8:127244815,chr8:127244831,chr8:127244921,chr8:127244886,chr8:127245898,chr8:127245956,chr8:127247698,chr8:127247892,chr8:127248729,chr8:127248777,chr8:127248804,chr8:127248885,chr8:126982713,chr8:126982707,chr8:126982712,chr8:127070113,chr8:126982766,chr8:127280345,chr8:127280345,chr8:127280343,chr8:127280737,chr8:127280959,chr8:127280119,chr8:127281731,chr8:127283961,chr8:127283982,chr8:127286798,chr8:127178556,chr8:127263639,chr8:127035688,chr8:127178512,chr8:127238139,chr8:127178524,chr8:127202626,chr8:127238223,chr8:127035783,chr8:127178410,chr8:127238165,chr8:127178521,chr8:127202649,chr8:127238228,chr8:127263555,chr8:127035622,chr8:127202690,chr8:127178477,chr8:126966914,chr8:127202984,chr8:127108269,chr8:127178497,chr8:127202774,chr8:127263686,chr8:127286782,chr8:127178563,chr8:127202782,chr8:127178571,chr8:127035686,chr8:127178511,chr8:127035686,chr8:127178522,chr8:127202707,chr8:127178494,chr8:127178511,chr8:127178542,chr8:127202783,chr8:127263695,chr8:127178572,chr8:127202648,chr8:127247749,chr8:127263555,chr8:127263689,chr8:127131034,chr8:127202585,chr8:127075614,chr8:127202706,chr8:127178493,chr8:127245790,chr8:127228476,chr8:127035853,chr8:127228504,chr8:127035818,chr8:127228556,chr8:127035692,chr8:127167523,chr8:127245897,chr8:127228520,chr8:127245740,chr8:127167603,chr8:127228646,chr8:127167539,chr8:127228518,chr8:127035824,chr8:127035722,chr8:126999779,chr8:126999812,chr8:127000147,chr8:127000148,chr8:127000146,chr8:127000147,chr8:127000138,chr8:127000134,chr8:127000149,chr8:127000149,chr8:127130864,chr8:127091460,chr8:127173295,chr8:127194845,chr8:127091442,chr8:127168169,chr8:127091411,chr8:127091405,chr8:127091814,chr8:127154800,chr8:127091342,chr8:127168263,chr8:126979636,chr8:127173140,chr8:126979782,chr8:126979791,chr8:127091446,chr8:127168152,chr8:127173293,chr8:127091342,chr8:127168263,chr8:127140597,chr8:127126910,chr8:126960259,chr8:126961009,chr8:126960991,chr8:126960831,chr8:126960881,chr8:126960871,chr8:126960880,chr8:126960914,chr8:126960914,chr8:126960916,chr8:127212525,chr8:126979924,chr8:126980379,chr8:126979605,chr8:126982753,chr8:126982607,chr8:126992970,chr8:126993098,chr8:127000148,chr8:127000147,chr8:126999669,chr8:127000149,chr8:127000148,chr8:126999721,chr8:127000147,chr8:127000148,chr8:127000146,chr8:127000134,chr8:127000148,chr8:127013188,chr8:127016594,chr8:127286757,chr8:127173119,chr8:127249192,chr8:127141040,chr8:126979662,chr8:127173157,chr8:126979649,chr8:127249181,chr8:127173145,chr8:127238140,chr8:127286842,chr8:127286869,chr8:127069012,chr8:127238283,chr8:127173347,chr8:127238152,chr8:127286856,chr8:127141040,chr8:127069062,chr8:127248760,chr8:127173347,chr8:127248826,chr8:127053886,chr8:127141117,chr8:127058026,chr8:127058026,chr8:127068998,chr8:127173411,chr8:127248762,chr8:127173213,chr8:127249233,chr8:127141086,chr8:127248730,chr8:127035607,chr8:127035653,chr8:127035662,chr8:127035661,chr8:127035747,chr8:127038059,chr8:127099714,chr8:127040942,chr8:127169698,chr8:127060260,chr8:127066266,chr8:127068088,chr8:127068140,chr8:127068111,chr8:127068075,chr8:127069069,chr8:127069049,chr8:127069142,chr8:127001051,chr8:127202613,chr8:127228623,chr8:127244010,chr8:127141036,chr8:127228489,chr8:127091447,chr8:127202793,chr8:127243877,chr8:127243755,chr8:127243969,chr8:127243971,chr8:127243968,chr8:127243955,chr8:127228645,chr8:127202783,chr8:127243868,chr8:127141118,chr8:127075548,chr8:127075504,chr8:127075504,chr8:127075586,chr8:127075629,chr8:127075617,chr8:127078739,chr8:127091403,chr8:127091861,chr8:127091313,chr8:127099876,chr8:126960962,chr8:126960968,chr8:127167599,chr8:127244818,chr8:127280304,chr8:126961020,chr8:126982713,chr8:127013100,chr8:127133909,chr8:127167616,chr8:127173293,chr8:127280304,chr8:126961032,chr8:127013101,chr8:127173293,chr8:127069052,chr8:127280396,chr8:126961003,chr8:127013103,chr8:127244379,chr8:127280156,chr8:127280437,chr8:127243790,chr8:126960941,chr8:127167539,chr8:127167510,chr8:127173186,chr8:126960863,chr8:126982562,chr8:127068128,chr8:126960863,chr8:126982562,chr8:127068131,chr8:127167465,chr8:126961122,chr8:127069018,chr8:126961104,chr8:127167702,chr8:127173378,chr8:127283928,chr8:126961084,chr8:127069051,chr8:127133815,chr8:126961043,chr8:127283919,chr8:126961075,chr8:127133827,chr8:127167670,chr8:126961071,chr8:127167668,chr8:127280201,chr8:126960941,chr8:127167539,chr8:127280310,chr8:126960959,chr8:127013148,chr8:127244854,chr8:127280245,chr8:126960960,chr8:126960961,chr8:126960957,chr8:126960935,chr8:126982625,chr8:127167531,chr8:127232162,chr8:127244178,chr8:126960938,chr8:127244858,chr8:126960961,chr8:127013152,chr8:127244858,chr8:127280170,chr8:126960867,chr8:126982547,chr8:127244183,chr8:127244722,chr8:127280804,chr8:127283918,chr8:126961074,chr8:127069060,chr8:127133824,chr8:127283940,chr8:126961096,chr8:127069067,chr8:127133824,chr8:126961087,chr8:126961129,chr8:127069019,chr8:126982609,chr8:127013179,chr8:127283865,chr8:127167618,chr8:126961053,chr8:127245077,chr8:127283961,chr8:126961136,chr8:126995631,chr8:127069000,chr8:127134290,chr8:127173397,chr8:126961139,chr8:127267664,chr8:127295692,chr8:126996050,chr8:127068201,chr8:127069179,chr8:127133940,chr8:127173907,chr8:127283926,chr8:126961082,chr8:127133826,chr8:127167679,chr8:127173335,chr8:127280395,chr8:127283921,chr8:126961077,chr8:127133825,chr8:126961135,chr8:127069012,chr8:127244855,chr8:127013139,chr8:127013151,chr8:127244871,chr8:127013156,chr8:127167531,chr8:126960936,chr8:127167531,chr8:127280199,chr8:126960939,chr8:127167724,chr8:126961122,chr8:127243745,chr8:127280731,chr8:127283807,chr8:126960967,chr8:127167564,chr8:127108233,chr8:127131021,chr8:127131078,chr8:127131078,chr8:127131112,chr8:127130795,chr8:127130807,chr8:127130797,chr8:127130808,chr8:127130963,chr8:127133980,chr8:127134049,chr8:127134110,chr8:127133830,chr8:127133929,chr8:127140792,chr8:127141066,chr8:127141083,chr8:127141083,chr8:127141090,chr8:127141090,chr8:127243875,chr8:127244058,chr8:127144011,chr8:127148203,chr8:127167589,chr8:127167617,chr8:127167617,chr8:127167676,chr8:127167676,chr8:127167676,chr8:127167718,chr8:127167718,chr8:127167712,chr8:127167718,chr8:127167472,chr8:127167455,chr8:127167455,chr8:127167485,chr8:127168268,chr8:127169624,chr8:127170619,chr8:127173128,chr8:127173168,chr8:127173249,chr8:127173249,chr8:127173302,chr8:127173302,chr8:127172986,chr8:127178421,chr8:127178439,chr8:127178548,chr8:127178337,chr8:127178359,chr8:127178428,chr8:127182758,chr8:127182815,chr8:127280251,chr8:126992972,chr8:127244878,chr8:127280283,chr8:126960053,chr8:126992913,chr8:126960054,chr8:127037966,chr8:127182490,chr8:126992919,chr8:127244787,chr8:127280306,chr8:126979696,chr8:126960180 NA NA sense sense unknown exon/splice-site exon/splice-site deletion low none none none 0 0 0 568 3296 ENST00000502463.7 ENST00000651482.1 upstream downstream mismatches(1) ATCACCCTATGGAGAACCG|GTATCCCACTTCTAAGATGCCTGATCTGAAGGACAGTAAAACAACTGACCTTTGCCAGCATGTAAAA...CCTACTTGAGATGCTCCTTGTCTCTCTGTTCAAGGACACCTTTTCTGAGCCTTTCTTGAACAAGAGTGGAGGACCGATAGGGCGATTAAACTGTCCTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25590 SNTB1::LINC00861 ENSG00000172164.15::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4310 TRUE 1636 SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120541810:- chr8:121547985-121825513:- chr8:121554050:- LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125946182:- chr8:126871965-127305033:- chr8:126958426:- chr8:120540136,chr8:120539669,chr8:120539796,chr8:120539221,chr8:120541583 chr8:126134090,chr8:126089221,chr8:126280788,chr8:126141408,chr8:126245144 NA NA chr8:121552376,chr8:121551909,chr8:121552036,chr8:121551461,chr8:121553823 chr8:127146334,chr8:127101465,chr8:127293033,chr8:127153652,chr8:127257389 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none PDZ_domain(100%),PH_domain(100%)| PDZ(100%),PH(100%),PH_17(100%)| 2 2 4 37242 3296 ENST00000395601.7 ENST00000651482.1 upstream downstream duplicates(2) CTCcaCTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGGGTGCCTTTCCCAAGACCATCATACAGTCTCCTTATGAAAAGCTCAAAATGTCTTCAGATGATGGAATCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGATT|GTATCCCACTTCTAAGATGCCTGATCTGAAGGACAGTAAAACAACTGACCTTTGCCAGCATGTAAAACACATGGTTTAACTAGTCCTCCAGGAACAACACTGAGCAATCCTGACCTGGGACTACTTTACTCGGC stCTYKNQECRLTIHYENGFSITTEPQEGAFPKTIIQSPYEKLKMSSDDGIRMLYLDFGGKDGEI|vshf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25591 SNTB1::LINC00861 ENSG00000172164.15::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4310 TRUE 1636 SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120541810:- chr8:121547985-121825513:- chr8:121554050:- LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125936333:- chr8:126871965-127305033:- chr8:126948577:- chr8:120540136,chr8:120539669,chr8:120539796,chr8:120539221,chr8:120541583 chr8:126134090,chr8:126089221,chr8:126280788,chr8:126141408,chr8:126245144 NA NA chr8:121552376,chr8:121551909,chr8:121552036,chr8:121551461,chr8:121553823 chr8:127146334,chr8:127101465,chr8:127293033,chr8:127153652,chr8:127257389 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none PDZ_domain(100%),PH_domain(100%)| PDZ(100%),PH(100%),PH_17(100%)| 1 3 2 37242 476 ENST00000395601.7 ENST00000651667.1 upstream downstream duplicates(3) CTCcaCTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGGGTGCCTTTCCCAAGACCATCATACAGTCTCCTTATGAAAAGCTCAAAATGTCTTCAGATGATGGAATCAGGATGCTGTATTTAGATTTTGGAGGCAAAGATGGAGAGATT|AGCTTCAACTGAGAATCTAGAAGAGAGTAGATGGAAAAATATTTTTCCCTCCCCTCCAAATGCAAGGATAATCTTACACGAGTCCAGGAGGAAG___GCTCATTCCACACTAAGTGTTCTGAATCAAAAAGATGAACAAAATACAGTGCCATTCTTCAAGGACTTCACAGTCTACAGGAAAG...AATAACTGCAGAATTGGAAATTGGAGCTGATGTGCTTAGAAGTGTTTTGAACAAGGGGCATGACTGTGACTCTCTCTGCTTTTGCAAGCTTCAGGAAAACCTTTACTCACAG___TTGAAAATACAGAGCCTCAGGGTGAAGCCCTAACTTCCC stCTYKNQECRLTIHYENGFSITTEPQEGAFPKTIIQSPYEKLKMSSDDGIRMLYLDFGGKDGEI|sfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25598 PVT1::GNAS ENSG00000249859.14::ENSG00000087460.29 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ GNAS ENSG00000087460.29 protein_coding + + chr20:58839718-58911192:+ chr20:58895612:+ chr20:57414773-57486247:+ chr20:57470667:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |G-protein_alpha_subunit(86%) |Arf(100%),G-alpha(21%) 1 2 2 50295 8605 ENST00000651587.1 ENST00000349036.9 downstream upstream duplicates(4) GGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTGCTGGAGAATCTGGTAAAAGCACCATTGTGAAGCAGATGAGGATCCTGCATGTTAATGGGTTTAATGGAGA___TGAGAAGGCAACCAAAGTGCAGGACATCAAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 1 Yes pituitary adenoma, pancreatic intraductal papillary mucinous neoplasm, fibrous dysplasia epithelial, mesenchymal oncogene missense 25605 LINC02964::LINC00861 ENSG00000286122.1::ENSG00000245164.10 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4304 TRUE 1631 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ LINC00861 ENSG00000245164.10 lncRNA - - chr8:125859721-126292788:- chr8:125936333:- chr8:126871965-127305033:- chr8:126948577:- chr8:126000824,chr8:126000880,chr8:126000893,chr8:126000945,chr8:125987173,chr8:125954207,chr8:125954597,chr8:125954556,chr8:125960121,chr8:125979923,chr8:125979606,chr8:125987441,chr8:126000841,chr8:125978882,chr8:125987530,chr8:125987427,chr8:125987388,chr8:125987413,chr8:125987507,chr8:125987454,chr8:125987454,chr8:125960223,chr8:125972754,chr8:125961072,chr8:125947986,chr8:125978838,chr8:126000751,chr8:126000754,chr8:126000763,chr8:126000852,chr8:125999714,chr8:126000764,chr8:126009398,chr8:125971871,chr8:125974296,chr8:125974488,chr8:125974500,chr8:125971939,chr8:125974555,chr8:125971971,chr8:125974700,chr8:125974661,chr8:125974732,chr8:125974781,chr8:125971969,chr8:125974931,chr8:125974956,chr8:125971960,chr8:125975023,chr8:125975090,chr8:125971973,chr8:125975083,chr8:125975218,chr8:125975190,chr8:125975293,chr8:125972032,chr8:125972040,chr8:125972032,chr8:125975335,chr8:125975303,chr8:125972025,chr8:125972035,chr8:125972067,chr8:125972045,chr8:125975311,chr8:125972134,chr8:125975374,chr8:125975397,chr8:125975477,chr8:125975482,chr8:125975585,chr8:125975654,chr8:125975699,chr8:125975756,chr8:125975790,chr8:125975791,chr8:125972147,chr8:125972175,chr8:125972204,chr8:125972188,chr8:125972205,chr8:125976813,chr8:125972284,chr8:125972295,chr8:125972358,chr8:125972348,chr8:125972410,chr8:125972380,chr8:125972351,chr8:125972442,chr8:125972389,chr8:125972394,chr8:125972418,chr8:125972427,chr8:125972459,chr8:125972470,chr8:125972434,chr8:125972514,chr8:125972644,chr8:125972916,chr8:125973449,chr8:125973688,chr8:125971867,chr8:125971862,chr8:125971854,chr8:125971850,chr8:125984970,chr8:125948890,chr8:125960859,chr8:125960887,chr8:125962143,chr8:125960759,chr8:125961835,chr8:125979740,chr8:125979740,chr8:125979965,chr8:125979999,chr8:125979999,chr8:125978590,chr8:125978621,chr8:125978682,chr8:125978739,chr8:125978715,chr8:125978788,chr8:125978788,chr8:125978785,chr8:125978775,chr8:125978809,chr8:125978809,chr8:125978809,chr8:125978843,chr8:125978843,chr8:125978880,chr8:125978848,chr8:125978848,chr8:125978848,chr8:125978848,chr8:125978842,chr8:125978889,chr8:125978851,chr8:125978862,chr8:125978972,chr8:125979008,chr8:125979037,chr8:125979131,chr8:125979144,chr8:125979177,chr8:125979198,chr8:125979245,chr8:125979231,chr8:125979214,chr8:125979313,chr8:125979370,chr8:125979349,chr8:125979365,chr8:125979420,chr8:125979412,chr8:125979489,chr8:125979486,chr8:125979469,chr8:125979486,chr8:125979476,chr8:125979609,chr8:125979609,chr8:125979565,chr8:125974594,chr8:125951298,chr8:126000835,chr8:125958036,chr8:125944176,chr8:125964317,chr8:125960955,chr8:125958204,chr8:125981603,chr8:125981662,chr8:125981674,chr8:125981723,chr8:125981690,chr8:125981734,chr8:125981807,chr8:125981831,chr8:125981825,chr8:125981824,chr8:125981818,chr8:125981854,chr8:125981934,chr8:125981923,chr8:125981958,chr8:125981979,chr8:125982052,chr8:125982052,chr8:125982055,chr8:125982008,chr8:125982040,chr8:125982042,chr8:125982035,chr8:125982074,chr8:125982072,chr8:125982140,chr8:125982150,chr8:125982260,chr8:125982331,chr8:125948754,chr8:125948883,chr8:125989591,chr8:125970460,chr8:125979812,chr8:125954584,chr8:125954437,chr8:125983142,chr8:125983138,chr8:125983284,chr8:125983298,chr8:125983275,chr8:125983320,chr8:125983337,chr8:125983448,chr8:125983390,chr8:125983469,chr8:125983456,chr8:125983480,chr8:125983506,chr8:125983558,chr8:125983595,chr8:125983599,chr8:125983588,chr8:125983651,chr8:125983779,chr8:125954182,chr8:125952066,chr8:125989531,chr8:125963892,chr8:125984228,chr8:125984260,chr8:125984340,chr8:125984290,chr8:125984315,chr8:125984297,chr8:125984323,chr8:125984507,chr8:125984495,chr8:125984585,chr8:125984642,chr8:125984006,chr8:125984666,chr8:125984035,chr8:125984144,chr8:125985005,chr8:125985126,chr8:125985082,chr8:125985160,chr8:125985194,chr8:125985221,chr8:125985255,chr8:125985254,chr8:125985258,chr8:125985317,chr8:125985293,chr8:125985544,chr8:125984776,chr8:125984744,chr8:125984798,chr8:125984996,chr8:125984963,chr8:125984947,chr8:125986457,chr8:125986487,chr8:125986548,chr8:125986515,chr8:125986677,chr8:125986659,chr8:125986675,chr8:125986836,chr8:125986839,chr8:125986839,chr8:125986839,chr8:125986846,chr8:125986812,chr8:125986868,chr8:125986886,chr8:125986887,chr8:125986868,chr8:125986870,chr8:125986907,chr8:125986915,chr8:125986963,chr8:125987026,chr8:125987069,chr8:125987041,chr8:125987155,chr8:125987309,chr8:125987302,chr8:125987938,chr8:125987951,chr8:125988032,chr8:125988122,chr8:125988174,chr8:125987331,chr8:125988177,chr8:125988250,chr8:125988299,chr8:125988364,chr8:125988364,chr8:125988364,chr8:125988426,chr8:125988453,chr8:125987384,chr8:125987384,chr8:125987371,chr8:125987371,chr8:125987434,chr8:125987425,chr8:125987425,chr8:125987466,chr8:125987466,chr8:125987466,chr8:125987466,chr8:125987447,chr8:125987447,chr8:125987477,chr8:125987477,chr8:125987477,chr8:125987435,chr8:125987460,chr8:125987523,chr8:125987474,chr8:125987537,chr8:125987492,chr8:125987608,chr8:125987607,chr8:125987607,chr8:125987607,chr8:125987709,chr8: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5911,chr8:127026161,chr8:127026504,chr8:127025580,chr8:127025847,chr8:127025823,chr8:127025832,chr8:127038179,chr8:127038724,chr8:127038164,chr8:127038851,chr8:127038188,chr8:127038963,chr8:127038904,chr8:127039103,chr8:127039288,chr8:127038276,chr8:127038347,chr8:127038366,chr8:127038382,chr8:127038415,chr8:127038507,chr8:127053481,chr8:127054513,chr8:127054513,chr8:127053390,chr8:127055595,chr8:127068075,chr8:127068133,chr8:127068141,chr8:127068140,chr8:127068140,chr8:127068023,chr8:127068011,chr8:127068011,chr8:127069049,chr8:127073103,chr8:127079614,chr8:127206201,chr8:126970602,chr8:126970601,chr8:127167609,chr8:126973805,chr8:126973799,chr8:126973897,chr8:126973896,chr8:126973895,chr8:126973952,chr8:127222554,chr8:126970274,chr8:126973864,chr8:126973913,chr8:126974023,chr8:126970262,chr8:126974062,chr8:126974159,chr8:126974123,chr8:126973838,chr8:126974210,chr8:126974234,chr8:126974255,chr8:127222616,chr8:127224171,chr8:127242781,chr8:126974324,chr8:126996050,chr8:127104440,chr8:126974302,chr8:126974267,chr8:126974381,chr8:126974415,chr8:126974407,chr8:126974416,chr8:126974218,chr8:126974548,chr8:126974553,chr8:126974572,chr8:126974265,chr8:126974597,chr8:126974594,chr8:126970584,chr8:126974655,chr8:126974711,chr8:126974745,chr8:126974693,chr8:126974736,chr8:126970640,chr8:126974764,chr8:126974703,chr8:126974813,chr8:126974816,chr8:126974646,chr8:126974668,chr8:126974816,chr8:126974853,chr8:126974845,chr8:126974901,chr8:126974919,chr8:126974948,chr8:126974955,chr8:126974982,chr8:126974979,chr8:126975022,chr8:126975015,chr8:126974949,chr8:126974950,chr8:126975024,chr8:126974750,chr8:126975080,chr8:126975011,chr8:126975096,chr8:126970668,chr8:126975062,chr8:126975183,chr8:126975072,chr8:126967246,chr8:127166549,chr8:126955094,chr8:126975163,chr8:126975180,chr8:127166055,chr8:127244583,chr8:127250175,chr8:126970785,chr8:126970285,chr8:126970781,chr8:127243008,chr8:126970822,chr8:126970839,chr8:126970281,chr8:126970808,chr8:126970332,chr8:126970866,chr8:126970837,chr8:126970875,chr8:126974693,chr8:126970574,chr8:126970823,chr8:126971000,chr8:126971028,chr8:126971105,chr8:126971157,chr8:126971165,chr8:126971260,chr8:126971155,chr8:126971414,chr8:126971440,chr8:126971460,chr8:126970394,chr8:126971509,chr8:126971509,chr8:126971462,chr8:126970397,chr8:126971400,chr8:126971400,chr8:126967269,chr8:126970443,chr8:126971492,chr8:126970457,chr8:126970459,chr8:126970503,chr8:127086930,chr8:127086754,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095862,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095853,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095867,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127095874,chr8:127098334,chr8:127098096,chr8:127101309,chr8:127119953,chr8:127120009,chr8:127120083,chr8:127120358,chr8:127120344,chr8:127120373,chr8:127119194,chr8:127120413,chr8:127119236,chr8:127120496,chr8:127120496,chr8:127120549,chr8:127120664,chr8:127120966,chr8:127119346,chr8:127131085,chr8:127131112,chr8:127130808,chr8:127130782,chr8:127133934,chr8:127133934,chr8:127139211,chr8:126979645,chr8:126979665,chr8:126979664,chr8:126979861,chr8:126979845,chr8:126979836,chr8:126979758,chr8:126979801,chr8:126979851,chr8:126979853,chr8:126979711,chr8:126979707,chr8:126979781,chr8:126979971,chr8:126979974,chr8:126979967,chr8:126979918,chr8:126979988,chr8:126980004,chr8:126979877,chr8:126980146,chr8:126980181,chr8:126980181,chr8:126980190,chr8:126980240,chr8:126980250,chr8:126980227,chr8:126980330,chr8:126980270,chr8:126980308,chr8:126980422,chr8:126980392,chr8:126980337,chr8:126980235,chr8:126980585,chr8:126980608,chr8:126980636,chr8:126980674,chr8:126980566,chr8:126980699,chr8:126980708,chr8:126980730,chr8:126980828,chr8:126980879,chr8:126980885,chr8:126980878,chr8:126980888,chr8:126981043,chr8:126981004,chr8:126981120,chr8:126981119,chr8:126981225,chr8:126981259,chr8:126981311,chr8:126981345,chr8:126981253,chr8:126981170,chr8:126981423,chr8:126981416,chr8:126981469,chr8:126981482,chr8:126981511,chr8:126981613,chr8:126981694,chr8:126981714,chr8:127072933,chr8:126981560 chr8:126954843,chr8:126954895,chr8:126954874,chr8:126954918,chr8:126954889,chr8:126954865,chr8:126954865,chr8:126954905 chr8:126954889,chr8:126954865,chr8:126954954,chr8:126954905,chr8:126954843,chr8:126954895,chr8:126954942,chr8:126954918 sense sense unknown exon/splice-site exon/splice-site inversion low none none none 11 14 10 6490 476 ENST00000651999.1 ENST00000651667.1 downstream downstream duplicates(7),mismatches(2),multimappers(2) CGCAGGCGCTCTTCCCCAGCGCAGACGCCCTGCTCTGTCCTGACAGTCCCGCGTTGCCCTCAATCTGAAGGTATGGATAATTAAG___GATTGCTGCCATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|AGCTTCAACTGAGAATCTAGAAGAGAGTAGATGGAAAAATATTTTTCCCTCCCCTCCAAATGCAAGGATAATCTTACACGAGTCCAGGAGGAAG___GCTCATTCCACACTAAGTGTTCTGAATCAAAAAGATGAACAAAATACAGTGCCATTCTTCAAGGACTTCACAGTCTACAGGAAAGGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25639 LINC02964::SNTB1 ENSG00000286122.1::ENSG00000172164.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4316 TRUE 1637 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120538969:- chr8:121547985-121825513:- chr8:121551209:- chr8:125949710,chr8:125949701 chr8:120542612,chr8:120542632 NA NA chr8:126961954,chr8:126961945 chr8:121554852,chr8:121554872 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none |MTBP_C(100%) 0 1 0 6490 39307 ENST00000651999.1 ENST00000395601.7 downstream downstream none CTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|CAACTGGACCTTCATTCCTGCCCCAAGCCA...TGCAATGCCACCAGAGAACGTGATGTCAGACACCATCTGTAGTGAGCAGCGCACCAGATGTAGCGTGCTACAGTCAGCTTTAGCTCTCAAGAGTCGTATGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25640 LINC02964::SNTB1 ENSG00000286122.1::ENSG00000172164.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4316 TRUE 1637 LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120542000:- chr8:121547985-121825513:- chr8:121554240:- chr8:125949710,chr8:125949701 chr8:120542612,chr8:120542632 NA NA chr8:126961954,chr8:126961945 chr8:121554852,chr8:121554872 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion low none none |MTBP_C(100%) 1 0 0 6490 23586 ENST00000651999.1 ENST00000395601.7 downstream downstream none CATGACTCAAAATGGGACCATGCCTTCAGATCTCCATCTGCTCCACCCAGGTAATAAGGACACTTGGAGCCTTCATGCTCCATTTGTGACTGGCAATACAGGGACCTAAAG|CTTGCACCTACAAAAACCAGGAGTGCCGTTTGACCATACATTATGAGAATGGATTTTCTATTACCACTGAACCACAGGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25641 NBAS::ENSG00000226764 ENSG00000151779.14::ENSG00000226764.2 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4317 TRUE 1638 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- ENSG00000226764 ENSG00000226764.2 lncRNA - - chr2:15997049-16062885:- chr2:15997609:- chr2:16137171-16203007:- chr2:16137731:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron duplication high none Neuroblastoma-amplified_sequence__N_terminal(13%)| Nbas_N(3%)| 300 301 300 6666 1442 ENST00000281513.10 ENST00000422415.2 upstream downstream duplicates(174),inconsistently_clipped(1),mismatches(67) ATCTGGTACAG___CCCGGCACCTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|GTCACACGGATGAAACATGGAGGGACCAGAATGTGAATCCTGATCTGTTTCCACTCTCATTCACTACAACAGGCTTGAGG...___GTGCTGCTGCTGAGCCaGGAGAATAGAAGCGTCCAAGTCAGTGCCTTCAGAGATCCAGCTGACTTCAAGAGGGCTGAGGTCCACCCAGGGCCACCAGCATCAGGAAGGAGACAGCTTTGCAGTGACTCCACCCGCTATGTGCTGGGAGGCATTGGCTGACTCCAAAGCACACAGCAATTTCGGCTTGGCCCACGGCAGCAAACAGCTGTGCCAATGCCCATCCTAACGAGAA IWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|ghtdetwrdqnvnpdlfplsftttgl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25642 NBAS::ENSG00000226764 ENSG00000151779.14::ENSG00000226764.2 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4317 TRUE 1638 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- ENSG00000226764 ENSG00000226764.2 lncRNA - - chr2:15997049-16062885:- chr2:15997412:- chr2:16137171-16203007:- chr2:16137534:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Neuroblastoma-amplified_sequence__N_terminal(13%)| Nbas_N(3%)| 260 121 300 6666 1984 ENST00000281513.10 ENST00000422415.2 upstream downstream duplicates(149),low_entropy(7),mismatches(44) CCAGGCACTGCAGAGGGTGAGGAGGAGACGATTCTCTATGACTTGTTGGTCAACACCGAGTGGCCACCGGAGACTGAAGTACAG___CCTAGAGGCAACCAAAAACATGGTGCATCCTTTATCATCACGAAAGCAATTCGAG___ATCGTTTATTATTTTTACGCCAATACATCTGGTACAG___CCCGGCACCTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|GTGCTGCTGCTGAGCCaGGAGAATAGAAGCGTCCAAGTCAGTGCCTTCAGAGATCCAGCTGACTTCAAGAGGGCTGAGGTCCACCCAGGGCCACCAGCATCAGGAAGGAGACAGCTTTGCAGTGACTCCACCCGCTATGTGCTGGGAGGCATTGGCTGACTCCAAAGCACACAGCAATTTCGGCTTGGCCCACGGCAGCAAACAGCTGTGCCAATGCCCATCCTAACGAGAATAAgGCAAGGCTTAGCCTGTAATCCACCCCTCTGCAGAAACC PGTAEGEEETILYDLLVNTEWPPETEVQPRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|gaaaepge* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25643 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2354 TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15536418:- chr2:15307040-15701464:- chr2:15676542:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15613224:+ chr2:15731302-15774470:+ chr2:15753348:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(44%)|DEAD/DEAH_box_helicase(21%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(23%)|DEAD(28%),Helicase_C(100%) 97 69 152 2520 36621 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(79),mismatches(8),multimappers(1) GAAATGTCAAG___TTCCGAAAGACCCGAAACCCCAGTGGAGACGGGTAGCATGGAGTTACGATTGTACCCTACTGGCCTATGCCGAAAGCACAGGAACTGTGAGGGTGTTTGATCTCATGGGAAGTGAACTCTTTGTCATTTCCCCG___GCATCTAGTTTTATAGGTGACTTAAGCTATGCCATTGCTGGGTTGATATTTTTAGAATATAAAGCAAGTGCACAGTGGTCTGCAGAACTCCTGGTCATCAATTACCGAGGAGAACTTAGAAGTTACCTTGTAAG|GGAGCTTCTGATAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTGGAAAATGGA___GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGAT KCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASSFIGDLSYAIAGLIFLEYKASAQWSAELLVINYRGELRSYLVr|ELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25645 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15275484:- chr2:15307040-15701464:- chr2:15415608:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790 chr2:15596062 NA NA chr2:15413914 chr2:15736186 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(100%)|DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(100%),Sec39(100%)|DEAD(12%),Helicase_C(100%) 1 0 103 1618 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(22),mismatches(4) CAAAAAGCTGACAGATGAAAACATGAGTCCTCTTGAAGCATTGGAGCCAGTTCTTTCAAGTCAAAATATCTTGTCTATTTCCAAACTTGTTCCCAAAATCC...GTTACAGAAGTTGTTCTGGACTGGAGACCCTCATCTCATTAAACAAGTCCCAGGCTCTTCACCGGAGTGGCTTCATGCCTATGATGTCTGCATGAAGTACT...CAAAAGCTGTGACCAAG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGAC KAVTK|VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25646 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15374608:- chr2:15307040-15701464:- chr2:15514732:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790 chr2:15596062 NA NA chr2:15413914 chr2:15736186 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(79%)|DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(100%),Sec39(79%)|DEAD(12%),Helicase_C(100%) 0 1 101 5222 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(23),mismatches(4) GAGGAGCTAGATCTTATCCAAGCCGTTGGATGTCTTGAAGAATTTGGGGTAAAGATCCTGCCTTTGCAAG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGACTT EELDLIQAVGCLEEFGVKILPLQ|gryscrysgktr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25647 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15504145:- chr2:15307040-15701464:- chr2:15644269:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790 chr2:15596062 NA NA chr2:15413914 chr2:15736186 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(81%)|DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(65%)|DEAD(12%),Helicase_C(100%) 0 1 101 2261 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(22),mismatches(4) AAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGAC RMLSVKFYSRQGQEQ|VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25648 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15539223:- chr2:15307040-15701464:- chr2:15679347:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15613224:+ chr2:15731302-15774470:+ chr2:15753348:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(29%)|DEAD/DEAH_box_helicase(21%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(19%)|DEAD(28%),Helicase_C(100%) 1 1 63 2264 36621 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(9),mismatches(2) TGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG___TTCCGAAAGACCCGAAACCCCAGTGGAGACGGGTAGCATGGAGTTACGATTGTACCCTACTGGCCTATGCCGAAAGCACAGGAACTGTGAGGGTGTTTGATCTCATGGGAAGTGAACTCTTTGTCATTTCCCCG|GGAGCTTCTGATAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTGGAAAATGGA___GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTG EIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISP|gasdnwrccspgsalcfgkwsryscrysgktr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25649 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15539223:- chr2:15307040-15701464:- chr2:15679347:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(29%)|DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(19%)|DEAD(12%),Helicase_C(100%) 11 9 44 2264 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(5),low_entropy(1),mismatches(1) GCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG___TTCCGAAAGACCCGAAACCCCAGTGGAGACGGGTAGCATGGAGTTACGATTGTACCCTACTGGCCTATGCCGAAAGCACAGGAACTGTGAGGGTGTTTGATCTCATGGGAAGTGAACTCTTTGTCATTTCCCCG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGACTTCAG___GTGAT AAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISP|VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25650 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15613224:+ chr2:15731302-15774470:+ chr2:15753348:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(13%)|DEAD/DEAH_box_helicase(21%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(3%)|DEAD(28%),Helicase_C(100%) 4 5 33 6666 36621 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(4),mismatches(2) ACGAAAGCAATTCGAG___ATCGTTTATTATTTTTACGCCAATACATCTGGTACAG___CCCGGCACCTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|GGAGCTTCTGATAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTGGAAAATGGA___GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCA TKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|gsf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25651 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(13%)|DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) Nbas_N(3%)|DEAD(12%),Helicase_C(100%) 8 8 25 6666 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(2),mismatches(1),multimappers(1) AGGGCCGGCTTTGAGTCCAGGCACTGCAGAGGGTGAGGAGGAGACGATTCTCTATGACTTGTTGGTCAACACCGAGTGGCCACCGGAGACTGAAGTACAG___CCTAGAGGCAACCAAAAACATGGTGCATCCTTTATCATCACGAAAGCAATTCGAG___ATCGTTTATTATTTTTACGCCAATACATCTGGTACAG___CCCGGCACCTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGACTTCAG___GTGATTGTTTGCTCTGCCACTTTGCATTCTTTCGATGTAAAGAAACTGTCCGAGAAGATAATGCATTTTCCTACATGGGTTGACTTAAAAGGAGAAGACTCTGTTCCAG GPALSPGTAEGEEETILYDLLVNTEWPPETEVQPRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|gryscrysgktr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25652 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15603192:+ chr2:15731302-15774470:+ chr2:15743316:+ chr2:15273790 chr2:15596062 NA NA chr2:15413914 chr2:15736186 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(13%)|DEAD/DEAH_box_helicase(77%),Helicase_conserved_C-terminal_domain(100%),SPRY_domain(100%) Nbas_N(3%)|DEAD(68%),Helicase_C(100%),SPRY(100%) 1 0 36 6666 20265 ENST00000281513.10 ENST00000677302.1 upstream upstream duplicates(3),mismatches(2) GTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|GGAAACACTACTATGAAGTATCCTGTCATGACCAAGGGTTATGCAGGGTCGG VRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|gKHYYEVSCHDQGLCRV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25653 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15561188:- chr2:15307040-15701464:- chr2:15701312:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none |DEAD/DEAH_box_helicase(17%),Helicase_conserved_C-terminal_domain(100%) |DEAD(12%),Helicase_C(100%) 1 0 4 8490 44788 ENST00000281513.10 ENST00000677302.1 upstream upstream none CTCGGCGAACATGGCGGCCCCCGAGTCAGGGCCGGCTTTGAGTCCAGGCACTGCAGAGGGTGAGGAGGAGACGATTCTCTATGACTTGTTGGTCAACACCGAGTGGCCACCGGAGACTGAAGTACAG|GTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCT___GATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGtTGGAAAAAGACTTCAG MAAPESGPALSPGTAEGEEETILYDLLVNTEWPPETEVQ|VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSvGKRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25654 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- GACAT3 ENSG00000236289.4 lncRNA + - chr2:16013928-16087201:+ chr2:16039217:- chr2:16154050-16227323:+ chr2:16179339:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Neuroblastoma-amplified_sequence__N_terminal(13%)| Nbas_N(3%)| 59 92 125 6666 234 ENST00000281513.10 unknown upstream downstream duplicates(74),low_entropy(1),mismatches(11),multimappers(1) CCTAGAGGCAACCAAAAACATGGTGCATCCTTTATCATCACGAAAGCAATTCGAG___ATCGTTTATTATTTTTACGCCAATACATCTGGTACAG___CCCGGCACCTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGATCAGTGTGTGGAAATCAG___GTCTGCAAAAGATGATTTTACATCCATTATTGGGAAATGTCAAG|ATGCAGCACCTAGATTGGGATTCACCTTGAGAAACCCAGGTGACTTTGAACTTCAGCAACACGGTACACTGCAGATGGTATCAAGCTTGGGCCAGTTCACCCCCAGCTAGAATACAGAGCAAAGCCCCATGTTCTTGCAAGAGTCCTTGGTGACTTTCTCATGGCTACAGCTCACTCCTCATCGACTTACAGGAATCTAAACAAGAGAGTGCCTCCCCTGTTGGAAGCAGCAAATCTTCCTTTATGGGTGAAATCAGCCA PRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQ|daaprlgftlrnpgdfelqqhgtlqmvsslgqftps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25655 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16073304:+ chr2:16154050-16227323:+ chr2:16213426:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(96%)| Nbas_N(85%)| 5 5 37 2039 75 ENST00000281513.10 ENST00000426539.1 upstream upstream duplicates(12),mismatches(2),multimappers(1) ATGGTGGAGACGGGGTTACTGCA___GTACCGAAGACACTGGGATTATTAAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG___GATGGAATTTTTAAGATGAGCCTTTCTCCAGATGGGATGCTCCTGGCAGCCATTCACTTCTCAGGGAAACTGAGCATCTGGGCGATTCCATCTCTGAAGCAACAAGGGGAATGGGGTCAAAATGAGCAG|CCAGCTCCTGTGTAAGGAAGTCAAGATTTTCTCAAGGGAAAAATCACCCTAGAAACCATCAACTCATGACAAACGTGATCTCCAACGTTCATTGTGGAAAATAGCCTCAAGGATGAGATGATGAGGATTTTGAAGATGGGTGAGTAGGTCGTCTACTTCCCGGAGGAGAAGGAAGGCCAGGAC...___GTTGTTTCTCTGGAGAATCCTGATTAATACATGAAGGGTCAAGAT GGDGVTAVPKTLGLLRMLSVKFYSRQGQEQDGIFKMSLSPDGMLLAAIHFSGKLSIWAIPSLKQQGEWGQNEQ|papv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25656 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16080898:+ chr2:16154050-16227323:+ chr2:16221020:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(96%)| Nbas_N(85%)| 1 5 19 2039 76 ENST00000281513.10 ENST00000651908.1 upstream upstream duplicates(7),mismatches(4),multimappers(1) CGGGGTTACTGCA___GTACCGAAGACACTGGGATTATTAAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG___GATGGAATTTTTAAGATGAGCCTTTCTCCAGATGGGATGCTCCTGGCAGCCATTCACTTCTCAGGGAAACTGAGCATCTGGGCGATTCCATCTCTGAAGCAACAAGGGGAATGGGGTCAAAATGAGCAG|GTCTTAAGAGAAAACACTGAGGTCCCTCGAAGATGAAGAAATCCTCATGAAGATGAATCCAAAGGTGGATTCAATTTCAGCTGTCTTTGGACTGAAGACTGCAACATCAACACTTCCCAGGGTCTCCAGCCTGCCCGCCTCTCCCGCAAATTTCAGATTTGCAAGTATCCACAGTCATGAGCAATTCCTTAAAGTAAATATTTCTCTGTTTCTTTCTGGATATGTATAGGTTGTTTCTCTGGAGAATCCTGATTAATACATGAAGGGTCAAGATAAG GVTAVPKTLGLLRMLSVKFYSRQGQEQDGIFKMSLSPDGMLLAAIHFSGKLSIWAIPSLKQQGEWGQNEQ|vlrentevprr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25657 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16081127:+ chr2:16154050-16227323:+ chr2:16221249:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(96%)| Nbas_N(85%)| 6 7 11 2039 126 ENST00000281513.10 ENST00000652394.1 upstream upstream duplicates(5),mismappers(1),mismatches(2) GCTGAAGTAGGCATGTCAAAAGCTTCTAGCTGTGGCCTTTCTGCCTGGAGAGTTCTTTCAGGATCACCGTATTATAAGCAGGTTACTAATGGTGGAGACGGGGTTACTGCA___GTACCGAAGACACTGGGATTATTAAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG___GATGGAATTTTTAAGATGAGCCTTTCTCCAGATGGGATGCTCCTGGCAGCCATTCACTTCTCAGGGAAACTGAGCATCTGGGCGATTCCATCTCTGAAGCAACAAGGGGAATGGGGTCAAAATGAGCAG|GTTGTTTCTCTGGAGAATCCTGATTAATACATGAAGGGTCAAGATAAGTCTACTCCAGG___TGAcGTGCAAAAAATGAACAAGGAGGCCCAATGATGCATCTGCTTAACTTTTCAGTTGTCAATGCAAATTAAGCACAAAGAGGACAGAGTTGATGACATATCAGGAACATTTTTTACTTCCGGAGCAGGTCTGAGTCCCAGCGGAAGACTGAGGCCGACTGAGCCAGAG AEVGMSKASSCGLSAWRVLSGSPYYKQVTNGGDGVTAVPKTLGLLRMLSVKFYSRQGQEQDGIFKMSLSPDGMLLAAIHFSGKLSIWAIPSLKQQGEWGQNEQ|vvslenpd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25658 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15504145:- chr2:15307040-15701464:- chr2:15644269:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16073304:+ chr2:16154050-16227323:+ chr2:16213426:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(81%)| Nbas_N(65%)| 1 0 12 2261 75 ENST00000281513.10 ENST00000426539.1 upstream upstream duplicates(5),multimappers(1) GAAAGTCACTGTTTCAGCTTCAGTAGgCATTATCCTCATGGAATCAACACAGCTgTTTACCACCCTGGTCACAG___ACTTTTACTTGcTGGcGGATGTGAAAC...GGCCTTTCTGCCTGGAGAGTTCTTTCAGGATCACCGTATTATAAGCAGGTTACTAATGGTGGAGACGGGGTTACTGCA___GTACCGAAGACACTGGGATTATTAAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG|CCAGCTCCTGTGTAAGGAAGTCAAGATTTTCTCAAGGGAAAAATCACCCTAGAAACCATCAACTCATGACAAACGTGATCTCCAACGTTCATTGTGGAAAATAGCCTCAAGGATGAGATGATGAGGATTTTGAAGATGGGTGAGTAGGTCGTCTACTTCCCGGAGGAGAAGGAAGGCCAGGAC GLSAWRVLSGSPYYKQVTNGGDGVTAVPKTLGLLRMLSVKFYSRQGQEQ|papv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25659 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15504145:- chr2:15307040-15701464:- chr2:15644269:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16080898:+ chr2:16154050-16227323:+ chr2:16221020:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(81%)| Nbas_N(65%)| 0 2 5 2261 76 ENST00000281513.10 ENST00000651908.1 upstream upstream duplicates(1),multimappers(1) GGCCTTTCTGCCTGGAGAGTTCTTTCAGGATCACCGTATTATAAGCAGGTTACTAATGGTGGAGACGGGGTTACTGCA___GTACCGAAGACACTGGGATTATTAAGGATGTTAAGTGTCAAGTTTTACAGTCGCCAGGGACAAGAACAG|GTCTTAAGAGAAAACACTGAGGTCCCTCGAAGATGAAGAAATCCTCATGAAGATGAATCCAAAGGTGGATTCAATTTCAGCTGTCTTTGGACTGAAGACTGCAACATCAACACTTCCCAGGGTCTCCAGCCTGCCCGCCTC...ATGAGCAATTCCTTAAAGTAAATATTTCTCTGTTTCTTTCTGGATATGTATAGGTTGTTTCTCTGGAGAATCCTGATTAATACATGAAGGGTCAAGATAAGTCTACTCCAGG___TGAcGTGCAAAAAATGAACAAGG GLSAWRVLSGSPYYKQVTNGGDGVTAVPKTLGLLRMLSVKFYSRQGQEQ|vlrentevprr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25660 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15504145:- chr2:15307040-15701464:- chr2:15644269:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16081127:+ chr2:16154050-16227323:+ chr2:16221249:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none Neuroblastoma-amplified_sequence__N_terminal(81%)| Nbas_N(65%)| 1 0 3 2261 126 ENST00000281513.10 ENST00000652394.1 upstream upstream none CTTTTTTGCTCCCTGATGGACTGGTTCGCTTGGTTAATAAACAGATAAACTGGCATTTGGTACTTGCAAG___CAATGGAAAGCTTTTGGCTGCTGTTCAAGAT...GGCCTTTCTGCCTGGAGAGTTCTTTCAGGATCACCGTATTATAAGCAGGTTACTAATGGTGGAGACGGGGTTACTGCA___GTACCGAAGACACTGGGATTATT...GTCGCCAGGGACAAGAACAG|GTTGTTTCTCTGGAGAATCCTGATTAATACATGAAGGGTCAAGATAAGTCTACTCCAGG___TGAcGTGCAAAAAATGAACAAG RQGQEQ|vvslenpd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25661 NBAS::ENSG00000223536 ENSG00000151779.14::ENSG00000223536.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4320 TRUE 1641 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15374608:- chr2:15307040-15701464:- chr2:15514732:- ENSG00000223536 ENSG00000223536.7 lncRNA + + chr2:16728121-16769567:+ chr2:16765012:+ chr2:16909388-16950834:+ chr2:16946279:+ chr2:15373321 chr2:16761368 NA NA chr2:15513445 chr2:16942635 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(79%)| Nbas_N(100%),Sec39(79%)| 76 83 116 5222 219 ENST00000281513.10 ENST00000423925.6 upstream upstream duplicates(88),low_entropy(8),mismatches(12) AAAGCCTTCTGTGCTCTAGTCGCCTTGAAAACATCCACCTGGCTGGACAGATGATGCACTGCAGTGCTTGTTCAGAAAATCCTCCAGCTGGTATAGCCCATAAAGGGAAACCCCACTACAGGGTCAGCTACGAAAAGAGTATTGACTTGGTTTTGGCTGCCAGCAGAGAGTACTTCAATTCTTCTACCAACCTCACTGATAGCTGCATGGATCTAGCCAG___GTGCTGCTTACAACTGATAACAGACAGACCCCCTGCCATTCAAGAGGAGCTAGATCTTATCCAAGCCGTTGGATGTCTTGAAGAATTTGGGGTAAAGATCCTGCCTTTGCAAG|AATTGTTGATTGCAAACACAAGTGCATGTGAGTGTAGAGGGACAGGCCTGCTCTCTGTATCCCTCTCCTGGCCCTCCCTGTGCTTTTGCTTTGGTCAGCAGGCTAAAGGAGGAG___GACTCTGTATCTTGCTGAGCCTTCTTAGCTTGGATTCTTTGATGAAACACCACCATATTGGAGCATTCCACCTGCCAAAGAACTGAAGGCAAGCTTCAGCCAACAGCCAGCAAGGAACTAAGATCTTC SLLCSSRLENIHLAGQMMHCSACSENPPAGIAHKGKPHYRVSYEKSIDLVLAASREYFNSSTNLTDSCMDLARCCLQLITDRPPAIQEELDLIQAVGCLEEFGVKILPLQ|elliantsacecrgtgllsvslswpslcfcfgqqakggglcillsllsldslmkhhhigafhlpkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25662 NBAS::ENSG00000223536 ENSG00000151779.14::ENSG00000223536.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4320 TRUE 1641 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15374608:- chr2:15307040-15701464:- chr2:15514732:- ENSG00000223536 ENSG00000223536.7 lncRNA + + chr2:16728121-16769567:+ chr2:16767016:+ chr2:16909388-16950834:+ chr2:16948283:+ chr2:15373321 chr2:16761368 NA NA chr2:15513445 chr2:16942635 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(79%)| Nbas_N(100%),Sec39(79%)| 3 16 48 5222 405 ENST00000281513.10 ENST00000448650.1 upstream upstream duplicates(15),mismatches(4) GCAGAGAGTACTTCAATTCTTCTACCAACCTCACTGATAGCTGCATGGATCTAGCCAG___GTGCTGCTTACAACTGATAACAGACAGACCCCCTGCCATTCAAGAGGAGCTAGATCTTATCCAAGCCGTTGGATGTCTTGAAGAATTTGGGGTAAAGATCCTGCCTTTGCAAG|GACTCTGTATCTTGCTGAGCCTTCTTAGCTTGGATTCTTTGATGAAACACCACCATATTGGAGCATTCCACCTGCCAAAGAACTGAAGGCAAGCTTCAGCCAACAGCCAGCAAGGAACTAAGATCTTCAGCCCAAAGCCACAGGGAACTGAGTCCTGCCAACTGCCACATCAGTGAGCATAGATGGGATCCTCCACAGTTGAACTTTCAGATAAGACCAGAGCCACACCTGACAATTTGATTGCAGCCTTGCAGACAACCCTGAAGCAG REYFNSSTNLTDSCMDLARCCLQLITDRPPAIQEELDLIQAVGCLEEFGVKILPLQ|glcillsllsldslmkhhhigafhlpkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25664 NBAS::LINC01804 ENSG00000151779.14::ENSG00000231031.6 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15356303:- chr2:15307040-15701464:- chr2:15496427:- LINC01804 ENSG00000231031.6 lncRNA + - chr2:15690782-15744339:+ chr2:15707990:- chr2:15830906-15884463:+ chr2:15848114:- chr2:15354703,chr2:15354703,chr2:15354703,chr2:15354704,chr2:15354435,chr2:15354705,chr2:15354705 chr2:15708295,chr2:15708289,chr2:15708293,chr2:15708295,chr2:15708232,chr2:15708294,chr2:15708293 NA NA chr2:15494827,chr2:15494827,chr2:15494827,chr2:15494828,chr2:15494559,chr2:15494829,chr2:15494829 chr2:15848419,chr2:15848413,chr2:15848417,chr2:15848419,chr2:15848356,chr2:15848418,chr2:15848417 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(91%)| Nbas_N(100%),Sec39(96%)| 20 38 84 2382 160 ENST00000281513.10 unknown upstream downstream duplicates(51),low_entropy(2),mismappers(57),mismatches(4) ATCTTATCCAAGCCGTTGGATGTCTTGAAGAATTTGGGGTAAAGATCCTGCCTTTGCAAG___TGCGATTGTGCCCTGATCGGATCAGTCTCATCAAGGAGTGTATTTCCCAGTCCCCCACATGCTATAAACAATCCACCAAGCTTCTGGGCCTTGCTGAGCTGCTGAGGGTTGCAG___GTGAGAACCCAGAAGAAAGGCGGGGACAGGTTCTAATCCTTTTAGTGGAGCAGGCACTTCGCTTCCATGACTACAAAGCAGCCAGTATGCATTGTCAGGAGCTGATGGCCACAG|TGGTTGGTCAGACACAGTGGCTTACACCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGCAGATTGCTTAAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCCATCTCTACAAGAAATAAAAAAAAATTAGCCAGGCATGGCGGCACAGCTACTTGGGAGGGTGAGGTGGGAGAATCACCTGAGCCCAG LIQAVGCLEEFGVKILPLQVRLCPDRISLIKECISQSPTCYKQSTKLLGLAELLRVAGENPEERRGQVLILLVEQALRFHDYKAASMHCQELMAT|vvgqtqwltpvipafweaevgrllkprslrpawatwrnpistrnkkklarhggtatwegevgespep NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25665 XPR1::TRMT1L ENSG00000143324.14::ENSG00000121486.12 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2355 FALSE NA FALSE NA XPR1 ENSG00000143324.14 protein_coding + + chr1:180632022-180890279:+ chr1:180682411:+ chr1:180601158-180859415:+ chr1:180651547:+ TRMT1L ENSG00000121486.12 protein_coding - - chr1:185118101-185157072:- chr1:185128747:- chr1:185087233-185126204:- chr1:185097879:- chr1:180740699 chr1:185130212 NA NA chr1:180709835 chr1:185099344 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none SPX_domain(23%)|N2_N2-dimethylguanosine_tRNA_methyltransferase(28%) SPX(73%)|TRM(19%) 31 56 43 370 318 ENST00000367590.9 ENST00000367506.10 downstream downstream duplicates(40),low_entropy(1),mismatches(8),multimappers(3) GCGCAGCGCCGCGCCGCGCCGGGGCCCATGTGGGGAGGAGTCGGAGTCGCTGTTGCCGCCGCCGCCTGTAGCTGCTGGACCCGAGTGGGAGTGAGGGGGAAACGGCAGGATGAAGTTCGCCGAGCACCTCTCCGCGCACATCACTCCCGAGTGGAGGAAGCAATACATCCAGTATGAG___GCTTTCAAGGATATGCTGTATTCAGCTCAGGACCAGGCACCTTCTGTGGAAG|AAAACCCATATAGACAGCTGCCTTGTAACTGTCATGGAAGCATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTGTG___GTCAAGTTCCCTTTTCAATACTGGATTCCTCAAAAGAATGCTATTTGAATCTCTTCACCATGGTTTGGATGACATTCAGACCCTAATAAAGACATTAATCTTTGAATCAGAGTGTACGCCTCAAAGTCAGTTTTCAATTCATGCATCTTCAAATGTCAACAAGCAAG___AAGAAAATGGTGTATTTATTAAAACTACAGATGACACCACAA MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVE|eNPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGFLKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQFSIHASSNVNKQEENGVFIKTTDDTT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25666 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2356 TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146528831:- chr3:146232967-146262643:- chr3:146246618:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Mitochondrial_carrier_protein(3%)|Scramblase_(99%) Mito_carr(0%)|Scramblase(73%) 24 28 76 357 524 ENST00000324194.12 ENST00000342435.9 downstream downstream duplicates(21),low_entropy(1),mismatches(5) GGCGGCGCGCTTAGGCAGGCGGTGGCGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCAGTCCGGGACCGAAGCCGCCTGCCGTAGCGGGCGGCCAGATCCGCGTCCCGCCTCAGCGGCCGGAGGACATGCGGGAGAGAGAATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGG|GACCTCCAGGATATAGTGGCTACCCTGGGCCCCAGGTCAGCTACCCACCCCCACCAGCCGGCCATTCAGGTCCTGGCCCAGCTGGCTTTCCTGTCCCAAATCAGCCAGTGTATAATCAGCCAGTATATAATCAGCCAGTTGGAGCTGCAGGGGTACCATGGATGCCAGCGCCACAGCCTCCATTAAACTGTCCACCTGGATTAGAATATTTAAGTCAG___ATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAG___TTTTA MSQRDTLVHLFAGg|tsri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25667 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2357 TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146525647:- chr3:146232967-146262643:- chr3:146243434:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Mitochondrial_carrier_protein(3%)|Scramblase_(90%) Mito_carr(0%)|Scramblase(54%) 7 7 35 357 409 ENST00000324194.12 ENST00000342435.9 downstream downstream duplicates(7) CCTCTGGTGAAGGGCGGCGCGCTTAGGCAGGCGGTGGCGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCAGTCCGGGACCGAAGCCGCCTGCCGTAGCGGGCGGCCAGATCCGCGTCCCGCCTCAGCGGCCGGAGGACATGCGGGAGAGAGAATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGG|ATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAG___TTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGG...___ATAGAAA...TCAAAATGAGAAAAGAGAGGATGTACTAAAAATAAGTGGTCCATGTGTTGTGTGCAGCTGTT...___ATTAAATCTCTTGATGAACA MSQRDTLVHLFAGg|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25668 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146522053:- chr3:146232967-146262643:- chr3:146239840:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Mitochondrial_carrier_protein(3%)|Scramblase_(84%) Mito_carr(0%)|Scramblase(34%) 1 2 30 357 344 ENST00000324194.12 ENST00000342435.9 downstream downstream duplicates(2) CCTCTGGTGAAGGGCGGCGCGCTTAGGCAGGCGGTGGCGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCAGTCCGGGACCGAAGCCGCCTGCCGTAGCGGGCGGCCAGATCCGCGTCCCGCCTCAGCGGCCGGAGGACATGCGGGAGAGAGAATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGG|TTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGGAAGATACTGATTGCTGTACCCGAAATTGCTGTGGGCCATCTAGACCTTTTACCTTGAGGATTATTGATAATATGGGTCAAGAAGTCATAACTCTGGAGAGACCACTAAGATGTAGCAGCTGTTGTTGTCCCTGCTGCCTTCAGGAG___ATAGAAATCCAAGC MSQRDTLVHLFAGg|fnrf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25669 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146517167:- chr3:146232967-146262643:- chr3:146234954:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Mitochondrial_carrier_protein(3%)|Scramblase_(26%) Mito_carr(0%)|Scramblase(6%) 0 2 4 357 542 ENST00000324194.12 ENST00000342435.9 downstream downstream duplicates(1) GGCGCGCTTAGGCAGGCGGTGGCGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCAGTCCGGGACCGAAGCCGCCTGCCGTAGCGGGCGGCCAGATCCGCGTCCCGCCTCAGCGGCCGGAGGACATGCGGGAGAGAGAATGAGCCAGAGGGACACGCTGGTGCATCTGTTTGCCGGAGG|ATTAAATCTCTTGATGAACAGTGTGTGGTTGGCAAAATTTCCAAGCACTGGACTGGAATTTTGAGAGAGGCATTTACAGACGCTGATAACTTTGGAATCCAGTTCCCTTTAGACCTTGATGTTAAAATGAAAGCTGTA...TCATGTTTTTTGAAAGCACTGGCAGCCAGGAACAAAAATCAGGAGTGTGGTAGTGGATTAGTGAAAGTCTCCTCAGGAAATCTGAAGTCTGTATATTGATTGAGACTATCTAAACTCATACCTGTATGAATTAAGCTGTAAGGCCTGTAGCTCTGGTTGTATACTTTTGCTTTTCA MSQRDTLVHLFAGg|lnllmnsvwlakfpstglef* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25670 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942729:+ chr3:140660672-140699837:+ chr3:140661571:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146528831:- chr3:146232967-146262643:- chr3:146246618:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none Mitochondrial_carrier_protein(3%)|Scramblase_(99%) Mito_carr(1%)|Scramblase(73%) 1 1 78 12 524 ENST00000513887.5 ENST00000342435.9 downstream downstream duplicates(9),mismatches(6) CGCGGCTGGAGTGCCGCGGGGAGGGCTGTGCCGGTTGCTTTCTGCAGCCGCATCTCGGCCAGCTCTCCTCGCCGTCCCCGGGGCGCTGTGCGTCTCCcGTC...GGCCGCACGCCGCAATCTAGaAGGCGTCGGGGATCCAGGGCCGCTTTGAGGAGCCTGGCTTCGGATTTCGCGTAGGTTGCATGGCCCAAGGGGACGGGGCGGAAAGTGCGGAGGCTGAGGACAAAATGGGCGCCGGAGACTCCTTTAGCCCTCGCTCCTTGCAGCGCTCGCTTGGGCCTCTGCACGTCACTCACGCCCCACCTCGGACCTCGGGCCGCTCATTTCCGGGCTCGGCTTTGCAAG|GACCTCCAGGATATAGTGGCTACCCTGGGCCCCAGGTCAGCTACCCACCCCCACCAGCCGGCCATTCAGGTCCTGGCCCAGCTGGCTTTCCTGTCCCAAATCAGCCAGTGTATAATCAGCCAGTATATAATCAGCCAGTTGGAGCTGCAGGGGTACCATGGATGCCAGCGCCACAGCCTCCATTAAACTGTCCACCTGGATTAGAATATTTAAGTCAG___ATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25671 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942729:+ chr3:140660672-140699837:+ chr3:140661571:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146525647:- chr3:146232967-146262643:- chr3:146243434:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none Mitochondrial_carrier_protein(3%)|Scramblase_(90%) Mito_carr(1%)|Scramblase(54%) 1 0 35 12 409 ENST00000513887.5 ENST00000342435.9 downstream downstream duplicates(3),mismatches(1) CCCAAGGGGACGGGGCGGAAAGTGCGGAGGCTGAGGACAAAATGGGCGCCGGAGACTCCTTTAGCCCTCGCTCCTTGtAGCGCTCGCTTGGGCCTCTGCAC...CTCGGACCTCGGGCCGCTCATTTCCGGGCTCGGCTTTGCAAG|ATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAG___TTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25672 COP1::ENSG00000227579 ENSG00000143207.21::ENSG00000227579.6 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4322 FALSE NA COP1 ENSG00000143207.21 protein_coding - - chr1:175944831-176207286:- chr1:176149006:- chr1:175913967-176176422:- chr1:176118142:- ENSG00000227579 ENSG00000227579.6 lncRNA - + chr1:177392667-177920152:- chr1:177810598:+ chr1:177361803-177889287:- chr1:177779733:+ chr1:176136819,chr1:176136823 chr1:177756875,chr1:177756871 NA NA chr1:176105955,chr1:176105959 chr1:177726010,chr1:177726006 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Zinc_finger__C3HC4_type_(RING_finger)(100%)| zf-C3HC4(100%),zf-C3HC4_2(100%),zf-C3HC4_3(100%),zf-RING_2(100%),zf-RING_5(100%),zf-RING_UBOX(100%)| 18 21 52 812 51 ENST00000367669.8 unknown upstream upstream duplicates(27),mismappers(3),mismatches(2) ATTTCAAGATTGGTTGGGAACTGACCAAGATAACCTTGATTTGGCCAATGTCAATCTTATGTTGGAGTTACTAGTGCAGAAGAAGAAACAACTGGAAGCA___GAATCACATGCAGCCCAACTACAGATTCTTATGGAATTCCTCAAGGTTGCAAGAAGAAATAAGAGAGAG|TTAATTTGGTGAGACACCTCTTCTACAATGCCAGAAACAAGTAATGGGATTCAAAAGG...___GCAGGATTTGTTCATCACTTGCCATGTGGAGGCACTGTCCTAGCTGCTCAGGATGAAGGGCTTTGTGCTGACAGCTGAGATCTGAATCACGAGAAGGATCCAGCCATGGGAC FQDWLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKRE|liw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25676 NBAS::ENSG00000236989 ENSG00000151779.14::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15366580:- chr2:15307040-15701464:- chr2:15506704:- ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr2:15362236,chr2:15362298,chr2:15362356,chr2:15362406,chr2:15362312 chr2:16098845,chr2:16098907,chr2:16098883,chr2:16098847,chr2:16099023 NA NA chr2:15502360,chr2:15502422,chr2:15502480,chr2:15502530,chr2:15502436 chr2:16238967,chr2:16239029,chr2:16239005,chr2:16238969,chr2:16239145 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(85%)| Nbas_N(100%),Sec39(86%)| 13 16 29 4682 341 ENST00000281513.10 ENST00000412381.5 upstream downstream duplicates(10),mismatches(2) TACAACTGATAACAGACAGACCCCCTGCCATTCAAGAGGAGCTAGATCTTATCCAAGCCGTTGGATGTCTTGAAGAATTTGGGGTAAAGATCCTGCCTTTGCAAG___TGCGATTGTGCCCTGATCGGATCAGTCTCATCAAGGAGTGTATTTCCCAGTCCCCCACATGCTATAAACAATCCACCAAGCTTCTGGGCCTTGCTGAGCTGCTGAGGGTTGCAG|AGACCAGTGACCTATTGAAGTGGTGCCTCTGGCTCAGTCGGCCTCAGTCTTCCGCTGGGACTCAGACCTGCTCCGGAAGTAAAAAATGTTCCTGATATGTCATCAACTCTGTCCTCTTTGTGCTTAATTTGCATTGACAACTGAAAAGTTAAGCAGATGCATCATTGGGCCTCCTTGTTCATTTTTTGCACgTCACTGTAAAAAACAAGAAATGATTATAGAAAAATGTATATATCTGCTGGAAAACTCCTTTCTC QLITDRPPAIQEELDLIQAVGCLEEFGVKILPLQVRLCPDRISLIKECISQSPTCYKQSTKLLGLAELLRVA|etsdllkwclwlsrpqssagtqtcsgskkcs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25678 ENSG00000259704::ENSG00000236989 ENSG00000259704.3::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2359 TRUE 4324 TRUE 1643 ENSG00000259704 ENSG00000259704.3 lncRNA + + chr15:90839641-90853608:+ chr15:90841284:+ chr15:91382871-91396838:+ chr15:91384514:+ ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr15:90852198,chr15:90852195,chr15:90852192 chr2:16094618,chr2:16094621,chr2:16094621 NA NA chr15:91395428,chr15:91395425,chr15:91395422 chr2:16234740,chr2:16234743,chr2:16234743 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 16 6 24 156 341 ENST00000653647.1 ENST00000412381.5 downstream downstream duplicates(14),multimappers(1) GCCGCAGTAGGAGCCCCTACGTAGGCCCTGCAAGAGGCCTGGCGTTCAGGAAAGGGCCCGCTGACCATCCAGTGCAGGGAAAGGAGTCCAGCTCTGGCCTCTGCCCCTCAGCTCCACCTCCTGCATTCCTAGGAGTTCTCCAGAGGATCTGATGGGAGCTCAGAACCGGTCCCAACAG___CTCCCTCCACCCTTCATGAACGGGGGCTGGAAAATGTGGTCTGCTCTGATAAGGATTTGCGTCAGGCTACTGGCTACTCAGCAGCCGAGAAGAGCAAGCCTCCAGGCCTCTGCACGCGTGCCTTCTGCCCG|AGACCAGTGACCTATTGAAGTGGTGCCTCTGGCTCAGTCGGCCTCAGTCTTCCGCTGGGACTCAGACCTGCTCCGGAAGTAAAAAATGTTCCTGATATGTCATCAACTCTGTCCTCTTTGTGCTTAATTTGCATTGACAACTGAAAAGTTAAGCAGATGCATCATTGGGCCTCCTTGTTCATTTTTTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25679 ENSG00000259704::ENSG00000236989 ENSG00000259704.3::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2360 TRUE 4324 TRUE 1643 ENSG00000259704 ENSG00000259704.3 lncRNA + + chr15:90839641-90853608:+ chr15:90839900:+ chr15:91382871-91396838:+ chr15:91383130:+ ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr15:90852198,chr15:90852195,chr15:90852192 chr2:16094618,chr2:16094621,chr2:16094621 NA NA chr15:91395428,chr15:91395425,chr15:91395422 chr2:16234740,chr2:16234743,chr2:16234743 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 11 3 15 203 341 ENST00000653647.1 ENST00000412381.5 downstream downstream duplicates(12) GCCGCAGTAGGAGCCCCTACGTAGGCCCTGCAAGAGGCCTGGCGTTCAGGAAAGGGCCCGCTGACCATCCAGTGCAGGGAAAGGAGTCCAGCTCTGGCCTCTGCCCCTCAGCTCCACCTCCTGCATTCCTAGGAGTTCTCCAGAGGATCTGATGGGAGCTCAGAACCGGTCCCAACAG|AGACCAGTGACCTATTGAAGTGGTGCCTCTGGCTCAGTCGGCCTCAGTCTTCCGCTGGGACTCAGACCTGCTCCGGAAGTAAAAAATGTTCCTGATATGTCATCAACTCTGTCCTCTTTGTGCTTAATTTGCATTGACAACTGAAAAGTTAAGCAGATGCATCATTGGGCCTCCTTGTTCATTTTTTGCACg unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25681 TADA2A::ACACA ENSG00000276234.5::ENSG00000278540.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37411390:+ chr17:35766977-35839830:+ chr17:35771477:+ ACACA ENSG00000278540.5 protein_coding - + chr17:37084992-37406836:- chr17:37232043:+ chr17:35441927-35766927:- chr17:35588958:+ chr17:37413087 chr17:37229812 NA NA chr17:35773172 chr17:35586731 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 8 6 20 422 34 ENST00000615182.5 unknown downstream upstream duplicates(8) TCGGCGAG___...CTTTGAATGATTTTCTGATCCATGTGCCACTTTTGTTTGTTCCTAGGGAGTCATCAAGCTTTGGTGTATGTGTTGGCCGGTTCTGAAGTCTTGAAGAAGCTCTGCTGAGGAAGACCAAAGCAGCACTCGTTGCCAATTAGGGAATGGACCGTTTGGGTTCCTTTAGCA|ACAGAGTGAAAGATTACCAGAAATCTGCTTGAGAGTCCATGAGGCAAGTTACCACTGGGCAGGTTATGCTAACACCTGGAGAGGATGAAGGTACCTCTTTACTAGAGCAACGCATATCCCATGACATTGACTCACGGAAGCCTGAGTTTCTTGATACCTCCCTCCCTGTAGGTTCAAAAGCCCCAGAAATCATCATCTAGCTCAGCAAAGCATACTATCAACATTCCTACTTCTAGAAAGCAGAGAATGGAATACTGGGCACATAAC MDRLGSFS|nrvkdyqksa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25685 NBAS::ENSG00000224194 ENSG00000151779.14::ENSG00000224194.1 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4326 TRUE 1644 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15356303:- chr2:15307040-15701464:- chr2:15496427:- ENSG00000224194 ENSG00000224194.1 lncRNA - - chr2:15668684-15680484:- chr2:15668944:- chr2:15808808-15820608:- chr2:15809068:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(91%)| Nbas_N(100%),Sec39(96%)| 7 5 10 2382 96 ENST00000281513.10 ENST00000431117.1 upstream downstream duplicates(8),low_entropy(1),mismatches(1) CGGATCAGTCTCATCAAGGAGTGTATTTCCCAGTCCCCCACATGCTATAAACAATCCACCAAGCTTCTGGGCCTTGCTGAGCTGCTGAGGGTTGCAG___GTGAGAACCCAGAAGAAAGGCGGGGACAGGTTCTAATCCTTTTAGTGGAGCAGGCACTTCGCTTCCATGACTACAAAGCAGCCAGTATGCATTGTCAGGAGCTGATGGCCACAG|GATGGAATTTGCAACGTGTTTTCTCAACTCACCCACGTCAGACTTGAGTGAAATGAACTCTGAGCATGTCTGCTTCTCCCAGCAAACTTCAGCTAATCCAAGGACAGTCATTAACTTGTTATTCTAAGTAATCCTCTGTTGAAAGCTGTGAGCCGCCTGGGGTGGACGAGGGCAGGGTTTTCAAGCACAAAAATATTGGACCTGCGGCTCCCATGAGGACAGACAGCCTCCCCcGAGGAGGGGAGGGATTCGACAGCCTCACTCCCAGACAGGACAGACAGAGGCATTTCAAACCCAG RISLIKECISQSPTCYKQSTKLLGLAELLRVAGENPEERRGQVLILLVEQALRFHDYKAASMHCQELMAT|gwnlqrvfsthprqt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25686 NBAS::ENSG00000224194 ENSG00000151779.14::ENSG00000224194.1 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4326 TRUE 1644 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15356303:- chr2:15307040-15701464:- chr2:15496427:- ENSG00000224194 ENSG00000224194.1 lncRNA - - chr2:15668684-15680484:- chr2:15669179:- chr2:15808808-15820608:- chr2:15809303:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication medium none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(91%)| Nbas_N(100%),Sec39(96%)| 0 1 12 2382 43 ENST00000281513.10 ENST00000431117.1 upstream downstream duplicates(6),mismatches(1) ATCAGTCTCATCAAGGAGTGTATTTCCCAGTCCCCCACATGCTATAAACAATCCACCAAGCTTCTGGGCCTTGCTGAGCTGCTGAGGGTTGCAG___GTGAGAACCCAGAAGAAAGGCGGGGACAGGTTCTAATCCTTTTAGTGGAGCAGGCACTTCGCTTCCATGACTACAAAGCAGCCAGTATGCATTGTCAGGAGCTGATGGCCACAG|GTTCACACTTAAACCCCCAGCTGTTTCCTGTGtGGCCCCAGATCATTTGACCCTAAGAACAACAGAGCCCATGGCCTGCT...CAG___GATGGAATTTGCAACGTGTTTTCTCAACTCACCCACGTCAGACTTGAGTGAAATGAACTCTGAGCATGTCTGCTTCTCCCAGCAAACTTCAG...GGACCTGCGGCTCCCATGAGGACAGACAGCCTCCCCcGAGGAGGGGAGGGATTCGACAGCCTCACTCCCAGACAGGACAGACAGAGGCATTTCAAACCCAG ISLIKECISQSPTCYKQSTKLLGLAELLRVAGENPEERRGQVLILLVEQALRFHDYKAASMHCQELMAT|gshlnpqlfpvwpqii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25687 NBAS::AHI1 ENSG00000151779.14::ENSG00000135541.22 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15402168:- chr2:15307040-15701464:- chr2:15542292:- AHI1 ENSG00000135541.22 protein_coding - + chr6:135283407-135498434:- chr6:135377506:+ chr6:135604545-135819572:- chr6:135698644:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(46%)| Nbas_N(100%),Sec39(54%)| 1 4 16 2325 12 ENST00000281513.10 unknown upstream upstream duplicates(2),mismappers(1),mismatches(1) AAAGAATATTTAGTAACTTTAGCTAAAGGGGACTTAAAATTTCCCCTGAAGATATTTCAGCATTCCAAACCAGAT___CTGCAGCAAAAAATTATTCCTGATCAGGACCAACTGATGGCAATAGCACTAGAGTGCATCTATACCTGTGAACGAAATGATCAACTCTGTCTTTGCTATGACCTACTAGAATGTCTGCCAGAAAGAGGATATGG|GGTCTTGCTTGGTTGCCCAGGATGGAGTGCAGCGGCATAATCATGGCTCACTGCAGCCTTGATCTCCTGGGCTCAAGTGATGCTTCCACCTCAGCCACCCGAGTAGTGGGACT?CAGGCATGTACCACCACACTCAGCTACTTTTTAAATTTTTTTGTAGTAACGGGGTCTCACTATGTTGCCCAGGCTTGTCTTGAATTCCTGGCCTCAAGCAATCTTCCTGCCCCAACCTCCCAAAG...CTTATTTTAAAAATGTCTCAGCATTATTAAAAGCAATTAGAAAACAAATAGAGCACTCCTTCTCAACTCTGGATTTATCAGATCACCTTCCTAAACATAAG KEYLVTLAKGDLKFPLKIFQHSKPDLQQKIIPDQDQLMAIALECIYTCERNDQLCLCYDLLECLPERGYg|vllgcpgwsaaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25688 SIL1::DNAJC18 ENSG00000120725.13::ENSG00000170464.10 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139050938:- chr5:138282413-138629246:- chr5:138386627:- DNAJC18 ENSG00000170464.10 protein_coding - - chr5:139408588-139444491:- chr5:139439492:- chr5:138744277-138780180:- chr5:138775181:- chr5:139044032,chr5:139044032,chr5:139044040 chr5:139440687,chr5:139440685,chr5:139440692 NA NA chr5:138379721,chr5:138379721,chr5:138379729 chr5:138776376,chr5:138776374,chr5:138776381 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |DnaJ_domain(100%),Domain_of_unknown_function_(DUF1977)(100%) |DUF1977(100%),DnaJ(100%) 1 8 9 74 69 ENST00000394817.7 ENST00000515581.5 upstream downstream duplicates(5),mismatches(1),multimappers(1) GTTTGCCCTGACCAACCCAGAGAAGAGCAGCACCAAAGAAACgGAGAGAAAAGAAACCAAAGCCGAGGAGGAGCTGGATGCCGAAGTCCTGGAGGgGTTCCACCCGACGCATGAGTGGCAGGCCCTTCAGCCAG___GGCAGGCTGTCCCTGCAGGATCCCACGTACGGCTGAATCTTCAGACTGGGGAAAGAGAGGCAAAACTCCAATATGAGGACAAGTTCCGAAATAATTTGAAAGGCAAAAG|CCTCGGGCgCGGGGGAGGCTCGGCGGACCTGCTGATTGGGAACCGATATGGCGGCGACTCTGGGCAGCGGGGAGCGCTGGACGGAAG___CTTACATTGACGCAGTTAGAAGAAACAAATACCCAGAAGACACACCTCCTGAGAGTCATGACCCCTGTGGCTGCTGTAACTGCATGAAGGCACAAAAGGAAAAGAAGTCTGAGAATGAGTGGACTCAGACCCGGCAGGGTGAGGGGAACTCCACGTAcAGTGAGGAACAGCTGCTTGGGGTACAAAG___GATCAAGAAATGCAGAAATTACTATGAAATTCTGGGAGTTTCTCGAGA FALTNPEKSSTKETERKETKAEEELDAEVLEgFHPTHEWQALQPGQAVPAGSHVRLNLQTGEREAKLQYEDKFRNNLKGKs|lgrgggsadllignryggdsgqrgaldgslh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Uterine Corpus Endometrial Carcinoma HEAD_AND_NECK,UTERUS no_match 138456724,138533958 FALSE,FALSE 138749961,138760803 FALSE,FALSE YES,PARTIALLY In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25689 RASAL2::RALGPS2 ENSG00000075391.18::ENSG00000116191.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4327 TRUE 1645 RASAL2 ENSG00000075391.18 protein_coding + + chr1:178094104-178484147:+ chr1:178390206:+ chr1:178063239-178453282:+ chr1:178359341:+ RALGPS2 ENSG00000116191.19 protein_coding + + chr1:178725165-178921842:+ chr1:178833424:+ chr1:178694300-178890977:+ chr1:178802559:+ chr1:178395056 chr1:178829607 NA NA chr1:178364191 chr1:178798742 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |PH_domain(100%),RasGEF_domain(35%) |Fibrinogen_C(100%),PH(100%),RasGEF(47%) 4 4 10 96 179 ENST00000367649.8 ENST00000367634.7 downstream upstream duplicates(1),mismatches(1) GTCGCCGGTGGCATGTTGGATCGGATCCTTCTGGAGTCCGTGTGCCAGCAACAGAGCTGGGTCCGGGTGTACG___ATGTGAAAGGACCACCCACCCACCGTCT...GACAGATTCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCTTCCGAGGGTCAGTTTCCCGAGTACCCACCAGAGGGCGCCACTAAACTGG___AGGTACCAGCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCCATGGACACTGCAAATACCTCACCCTTCAAAGTACCA|TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAATTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCTTGCATTCCCTATTTAG___GTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATTCTAGAAAATGAGCAA TDSTKGRCLRRTVSVPSEGQFPEYPPEGATKLEVPAERSPRRRSISGTSTSEKPNSMDTANTSPFKVP|LLSRKDKTTFEKLEYVMSKEDNYKRLRDYISSLKMTPCIPYLGIYLSDLTYIDSAYPSTGSILENE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25690 RASAL2::RALGPS2 ENSG00000075391.18::ENSG00000116191.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4327 TRUE 1645 RASAL2 ENSG00000075391.18 protein_coding + + chr1:178094104-178484147:+ chr1:178390206:+ chr1:178063239-178453282:+ chr1:178359341:+ RALGPS2 ENSG00000116191.19 protein_coding + + chr1:178725165-178921842:+ chr1:178877498:+ chr1:178694300-178890977:+ chr1:178846633:+ chr1:178395056 chr1:178829607 NA NA chr1:178364191 chr1:178798742 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |PH_domain(100%),RasGEF_domain(9%) |PH(100%),RasGEF(0%) 1 0 5 96 226 ENST00000367649.8 ENST00000367634.7 downstream upstream mismatches(1) GACAGATTCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCTTCCGAGGGTCAGTTTCCCGAGTACCCACCAGAGGGCGCCACTAAACTGG___AGGTACCAGCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATC...CATGGACACTGCAAATACCTCACCCTTCAAAGTACCA|GTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATTCTAGAAAATGAGCAAAGATCAAATTTAATGAATAATATCCTTCGAATAATTTCTGATTTACAGCAGTCTTGTGAATATG___ATATTCCCATGTTGCCTCATGTCCAAAAATATCTCAACTCTGTTCAGTATATAGAAGAACTACAAAAATTTGTGGAAGACGATAATTACAA MDTANTSPFKVP|vsicqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25691 FOXJ3::CCDC30 ENSG00000198815.9::ENSG00000186409.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXJ3 ENSG00000198815.9 protein_coding - - chr1:42176539-42335877:- chr1:42265115:- chr1:42642210-42801548:- chr1:42730786:- CCDC30 ENSG00000186409.19 protein_coding + - chr1:42463221-42657190:+ chr1:42468665:- chr1:42928892-43122861:+ chr1:42934336:- chr1:42251800,chr1:42251802 chr1:42473374,chr1:42473373 NA NA chr1:42717471,chr1:42717473 chr1:42939045,chr1:42939044 NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none Forkhead_domain(80%)| Forkhead(26%)| 8 9 1 384 26 ENST00000372573.5 unknown upstream downstream duplicates(8),mismatches(1) GAAGTCCAACAGCACAAAGATGGGAAACCTCCATACAGTTATGCCAGCCTCATTACATTTGCAATTAATAGCTCACCCAAAAAGAAAATGACTTTAAGTGAAATTTATCAGTGGATTTGTGATAACTTCCCATATTATAGAGAGGCTGGCAGTGGTTGGAAG___AATTCCATACGACATAATCTGTCATTGAACAAATGTTTCCTTAAAGTGCCTCGATCTAAGGATGACCCTGGAAAG|ATCAATCTAGAAGAAGTGGCAAGAAACAGAAACACATTGAAGTTGGAACAAATACAG___TGGcGTGGTACATCAGAAGGCTGACTG EVQQHKDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVPRSKDDPGK|inleevarnrntlkleqiqwrgtseg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25693 DAP3::TRPC7 ENSG00000132676.16::ENSG00000069018.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155709824:+ chr1:155657751-155708801:+ chr1:155679615:+ TRPC7 ENSG00000069018.19 protein_coding - + chr5:136212745-136365545:- chr5:136365290:+ chr5:135548433-135701233:- chr5:135700978:+ chr1:155710723,chr1:155710713,chr1:155710724 chr5:136360713,chr5:136360700,chr5:136360711 NA NA chr1:155680514,chr1:155680504,chr1:155680515 chr5:135696401,chr5:135696388,chr5:135696399 NA NA sense antisense out-of-frame CDS/splice-site 5'UTR translocation/5'-5' high none none none 5 3 6 1110 8 ENST00000471642.6 unknown downstream upstream duplicates(6) GCGCTTTGGAGCCGGCCCCAGGCAGCGTGTGTCGGTCGCCTAGgCTGGAGAACTAGTCCTCGACTCACG___TGCAAGGATGATGCTGAAAGGAATAACAAGGCTTATCTCTAGGATCCATAAG|ATGACCGGAATCCGGTGTTGAGTCGCCAGAAGCTGGCTCCCCATGGGTGGTAGCCAAGGATGTACCGCTCTCCGTGGTGCTGAAGTATAGAGCTGGTCAA___...CTTCCGAGGCAGAACCGTGTTACCGTCCTTTTCCTAATCGGGGGGAAATTTCCCAGAGAACATGACGGAGAAGCATCTGTGTGAGAGTGGCATGCGGCGTG...___TCTCCCTTCAGGATGAGAGGCTCGCCAGACATCTGGAGGATCTGATCTTCCATCCCATATAGAAACATGG MMLKGITRLISRIHK|mtgirc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25694 XXYLT1::MED12L ENSG00000173950.16::ENSG00000144893.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2363 FALSE NA FALSE NA XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195156449:- chr3:194789013-194991888:- chr3:194877178:- MED12L ENSG00000144893.13 protein_coding + + chr3:151085286-151437072:+ chr3:151355121:+ chr3:150803073-151154860:+ chr3:151072909:+ chr3:195119090 chr3:151352906 NA NA chr3:194839819 chr3:151070694 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Glycosyl_transferase_family_8(40%)|Eukaryotic_Mediator_12_catenin-binding_domain(100%) Glyco_transf_8(44%)|I-set(100%),Ig_3(100%),Med12-LCEWAV(0%),Med12-PQL(100%),ig(100%) 6 2 5 150 83 ENST00000310380.11 ENST00000687756.1 upstream upstream duplicates(6) GACGGATAAGCTCTTCCCCATCGTGGAGGCCATGCAGAAGCACTTCAGTGCTGGCTTGGGAACCTACTACAGTGACTCCATCTTCTTCCTCTCGGTCGCCATGCATCAGATCATGCCCAAAG___AGATCCTGCAGATCATTCAGCTGGACCTAGACCTGAAGTTTAAGACCAACATCCGGGAGTTGTTTGAGGAATTTGACAGTTTCCTGCCAGGCGCCATCATCGGCATAGCCCGGGAGATGCAGCCAGTTTACAG|TTGGGGACGAAGGACAAAAAGCCAGGAAGAACAAACAGGAGACATTTCCAACACTGGAGACTGTGTTCACTAAACTCCAGCTCCTTTCATATTTTGATCAACATCAAGTGACATCTCAG___ATTTCTAACAATGTGCTAGAACAAATCACAAGCTTTGCGTCAGGAACATCCTATCATCTCCCTTTGGCTCAC TDKLFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYs|wgrrtksqeeqtgdisntgdcvh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25704 CLEC16A::ATF7IP2 ENSG00000038532.17::ENSG00000166669.14 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4331 TRUE 1646 CLEC16A ENSG00000038532.17 protein_coding + + chr16:10944539-11182186:+ chr16:11096791:+ chr16:11038396-11276043:+ chr16:11190648:+ ATF7IP2 ENSG00000166669.14 protein_coding + + chr16:10326434-10483638:+ chr16:10472110:+ chr16:10420291-10577495:+ chr16:10565967:+ chr16:11107245,chr16:11107242,chr16:11107246,chr16:11107238 chr16:10455630,chr16:10455624,chr16:10455629,chr16:10455624 NA NA chr16:11201102,chr16:11201099,chr16:11201103,chr16:11201095 chr16:10549487,chr16:10549481,chr16:10549486,chr16:10549481 NA NA sense sense unknown intron CDS/splice-site duplication high none Uncharacterised_conserved_protein(100%)|ATF-interacting_protein_binding_domain(23%),Fibronectin-III_type_domain(100%) CLEC16A_C(59%),FPL(100%)|ATF7IP_BD(4%),fn3_4(100%) 0 1 7 0 6 unknown ENST00000396560.6 downstream upstream duplicates(3) CTGAGGCAATTCTTGGTTGGCAAATGTAGGAATATTTTGTCCAT|TAACAATGATGATGTTATGTTGATTTCTGTGGAAAGTCCTAATTTGACAACTCCAATTACATCAAATCCAACAG___ATACCAGAAAAATTACATCAGGAAATTCTAGCAATTCTCCCAATGCTGAAGTTATG___GCTGTACAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25705 CLEC16A::ATF7IP2 ENSG00000038532.17::ENSG00000166669.14 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2365 TRUE 4331 TRUE 1646 CLEC16A ENSG00000038532.17 protein_coding + + chr16:10944539-11182186:+ chr16:11061022:+ chr16:11038396-11276043:+ chr16:11154879:+ ATF7IP2 ENSG00000166669.14 protein_coding + + chr16:10326434-10483638:+ chr16:10473479:+ chr16:10420291-10577495:+ chr16:10567336:+ chr16:11107245,chr16:11107242,chr16:11107246,chr16:11107238 chr16:10455630,chr16:10455624,chr16:10455629,chr16:10455624 NA NA chr16:11201102,chr16:11201099,chr16:11201103,chr16:11201095 chr16:10549487,chr16:10549481,chr16:10549486,chr16:10549481 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Uncharacterised_conserved_protein(100%)|ATF-interacting_protein_binding_domain(11%),Fibronectin-III_type_domain(100%) CLEC16A_C(41%),FPL(100%)|ATF7IP_BD(1%),fn3_4(100%) 0 1 6 84 21 ENST00000703130.1 ENST00000396559.5 downstream upstream duplicates(2) CCATCCTGCTGCCCCCAACAGGCACGCCACTGACGGGCATTGACTTCGTGAAGCGGCTGCCGTGTGGCGATGTGGAGAAGACCCGGCGG___GCCATCCGGGTaTTCTTCATGCTGCGTTCCCTGTCACTGCAATTGCGAGGGGAGCCTGAGACACAGTTGCCGCTGACTCGGGAGGAGGACCTGA...CAAGACTGATGATGTCCTGGATCTGA|ATACCAGAAAAATTACATCAGGAAATTCTAGCAATTCTCCCAATGCTGAAGTTATG___AAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCTGCTTCAAACTCAAAGGAAA KTDDVLDL|nTRKITSGNSSNSPNAEVMKVQYPPWSHIRKLLQTQR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25706 IFT122::EPHB1 ENSG00000163913.14::ENSG00000154928.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2366 FALSE NA FALSE NA IFT122 ENSG00000163913.14 protein_coding + + chr3:129429607-129520510:+ chr3:129507762:+ chr3:129148450-129239353:+ chr3:129226605:+ EPHB1 ENSG00000154928.19 protein_coding + + chr3:134795260-135260467:+ chr3:135106448:+ chr3:134514102-134979309:+ chr3:134825290:+ chr3:129509673,chr3:129509672 chr3:135068224,chr3:135068220 NA NA chr3:129228516,chr3:129228515 chr3:134787066,chr3:134787062 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none WD_domain__G-beta_repeat(100%)|Ephrin_type-A_receptor_2_transmembrane_domain(100%),Fibronectin_type_III_domain(100%),Protein_kinase_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%) MBD(100%),TPR_7(100%),WD40(100%)|EphA2_TM(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),SAM_1(100%),SAM_2(100%),fn3(100%) 1 2 5 331 35 ENST00000689313.1 ENST00000398015.8 downstream upstream duplicates(4),mismatches(1) GCAGCTCACAAACAATGCCGTGGCGGAGAGCAGGTTTAATGATGCTGCCTATTATTACTGGATGCTGTCCATGCAGTGCCTCGATATAGCTCAAG___ATCCTGCCCAGAAGGACACAATGCTTGGCAAGTTCTACCACTTCCAGCGTTTGGCAGAGCTGTACCATGGTTACCATGCCATCCATCGCCACACG|CTTGCCCTGCAGGGACATTCAAGGCCAGCCAGGAAGCTGAAGGCTGCTCCCACTGCCCCTCCAACAGCCGCTCCCCTGCAGAGGCGTCTCCCATCTGCACCTGTCGGACCGGTTATTACCGAGCGGACTTTGACCCTCCAGAAGTGGCATGCACTA___GCGTCCCATCAGGTCCCCG QLTNNAVAESRFNDAAYYYWMLSMQCLDIAQDPAQKDTMLGKFYHFQRLAELYHGYHAIHRHT|lalqghsrparklkaaptapptaaplqrrlpsapvgpvitertltlqkwhalashqvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ephrin type-B receptor 1 TK Eph P54762 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25708 MED12L::TNK2 ENSG00000144893.13::ENSG00000061938.21 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MED12L ENSG00000144893.13 protein_coding + + chr3:151085286-151437072:+ chr3:151357376:+ chr3:150803073-151154860:+ chr3:151075164:+ TNK2 ENSG00000061938.21 protein_coding - - chr3:195863364-195911945:- chr3:195867016:- chr3:195590235-195638816:- chr3:195593887:- chr3:151357846 chr3:195867134 NA NA chr3:151075634 chr3:195594005 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Eukaryotic_Mediator_12_subunit_domain(100%),Transcription_mediator_complex_subunit_Med12(100%)| 7TM_GPCR_Srv(100%),7TM_GPCR_Srx(100%),7tm_1(100%),Med12(100%),Med12-LCEWAV(100%)| 0 1 5 61 285 ENST00000687756.1 ENST00000333602.14 downstream downstream duplicates(3),low_entropy(1) CTAAACTCCAGCTCCTTTCATATTTTGATCAACATCAAGTGACATCTCAG___ATTTCTAACAATGTGCTAGAACAAATCACAAGCTTTGCGTCAGGAACATCC...CTTTGATCTCATGGAGCCAGCACTGAACATCAACGGACTAATTGACTTCGCAATACAG___TTACTAAATGAACTGAGTGTTGTGGAAGCTGAACTGCTCCTAAAATCCTCCAGCCTGGCAGGAAGTTATACAACAGGACTGTGTGTCTGCATCGTGGCTGTTCTCAGGCGCTATCACAGTTGTCTAATCTTGAATCCTGATCAGACAGCCCAGGTGTTTGAAGG|GTGGAGCAGCTCTTCGGGCTGGGTCTGCGGCCCAGAGGGGAGTGCCACAAAGTGCTGGAGATGTTCGACTGGAACCTGGAGCAGGCCGGCTGCCACCTTCTGGGCTCCTGGGGCCCTGCCCAC---AA___GCGCTGAGATGCGTCTGGAGAGCCAGAGGGCCTGCCTGAAGGAATCACCTGAGCCTGTCCaTCCACCAGGAGTGGGGAGATGCCCCCATCCAGTCCTGGAGGACCCG FDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPDQTAQVFEg|wssssgwvcgpegsatkcwrcstgtwsrpaatfwapgalptsaemrlesqraclkespepvhppgvgrcphpvled NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Activated CDC42 kinase 1 TK Ack Q07912 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25716 SRRM3::STYXL1 ENSG00000177679.16::ENSG00000127952.17 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRRM3 ENSG00000177679.16 protein_coding + + chr7:76201896-76287288:+ chr7:76235299:+ chr7:75831214-75916605:+ chr7:75864617:+ STYXL1 ENSG00000127952.17 protein_coding - + chr7:75996338-76048004:- chr7:76037583:+ chr7:75625656-75677322:- chr7:75666901:+ chr7:76238695,chr7:76238696 chr7:76022959,chr7:76022955 NA NA chr7:75868013,chr7:75868014 chr7:75652277,chr7:75652273 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none cwf21_domain(53%)| cwf21(0%)| 0 3 2 127 20 ENST00000611745.2 unknown downstream upstream duplicates(3),mismatches(3) GGGCCAGCCACGATGTCCTCCACCGTGAACAACGGGGCGGCCAGCATGCAGTCCACACCCGACGCCGCGAACGGCTTCCCGCAGCCCAGCTCCTCCTCGGGGgCCTGGCCGCGGGCGGgAGAGGAGCTGCGCGCCGCGGAGCCGGGCCTGGgGAAGCGCGCGCACCGCGAGATCCTGGACCACGAGCGCAAGCGGCGGGTGGAGCTCAAGTGCATGGAGCTGCAGGAGATGATGGAGGAGCAGGG|GGGACTTCCATCCTGACTGACGGTGGAGGTGTCAGAGGCTGGGCCTGACCACAGGCTTCTTGTAGGAGTTCGAGGATACTGCAGGCTTGACCCAGCGCTCAACTGCCAAGCCACCCTAACCCCCcAGACAGTCCAGGTGGACACAATTGATGGGCATTTGCTTCTGGTGAAGAGACAACACTTGATGATCCTGGAGAAGCCAGACCATGAGCTTCACTTTGAG...TCAAGCTGACCAGCCCAG___ATGCAGCCCTCACCAGAAGCCGACCAGATGCAGCTACCCAATCTGGAACTTCCTAGCCTCCAGAACAGTAAGCTAAATAAACTTCTTTGCTATATAAATTACCCAATCTCAAGCATTCTGTGACAGCAACAGAAAAGAGACTAAGACAGG MSSTVNNGAASMQSTPDAANGFPQPSSSSGaWPRAgEELRAAEPGLgKRAHREILDHERKRRVELKCMELQEMMEEQg|glps* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25720 DLG2::SYTL2 ENSG00000150672.19::ENSG00000137501.18 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:85598657:- chr11:83166055-85339379:- chr11:85309701:- SYTL2 ENSG00000137501.18 protein_coding - - chr11:85694224-85811159:- chr11:85745772:- chr11:85405267-85522202:- chr11:85456815:- chr11:85594743,chr11:85594743,chr11:85594746 chr11:85746258,chr11:85746245,chr11:85746258 NA NA chr11:85305787,chr11:85305787,chr11:85305790 chr11:85457301,chr11:85457288,chr11:85457301 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none L27_1(80%)|C2_domain(100%) L27_1(8%)|C2(100%) 1 3 0 10 4 ENST00000706233.1 ENST00000389960.8 upstream downstream none CTGGATTTCAAAACTGAACACTGAAGTGGTTTGCAACAGTTACCTGGCTCTTGGCCTCAATCCAGCTGGATCAAACTGAGACCTGAAAAGAGATATTGACT...GTTGAAAAATGCGGTTAAAAAGGTGATGGGTATCTTTAAGAGCAGCTTATTCCAAGCTTTGCTAG|CTGAGCAGAGTAAAGACAGAGAAAATGGGGCAAAGGAAAGCTGGGTGAATAATGTCAACAAAGATGCTTTCCTTCCTCCAGAGCTGGCTGGCGTTGTAGAAGAGCCAGAAGAgGATGCAGCACCAGCAAGCCCGAG___TTCCAGTGTGGTAAATCCAGCTTCCAGTGTGATTGATATGTCCCAGGAAAACACAAG LKNAVKKVMGIFKSSLFQALL|aEQSKDRENGAKESWVNNVNKDAFLPPELAGVVEEPEEDAAPASPSSSVVNPASSVIDMSQENT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25723 ITGA6::DLX2-DT ENSG00000091409.16::ENSG00000236651.1 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITGA6 ENSG00000091409.16 protein_coding + + chr2:172427354-172506459:+ chr2:172476513:+ chr2:173292082-173371187:+ chr2:173341241:+ DLX2-DT ENSG00000236651.1 lncRNA + + chr2:172103006-172109982:+ chr2:172108902:+ chr2:172967734-172974710:+ chr2:172973630:+ chr2:172479545,chr2:172479537 chr2:172108250,chr2:172108253 NA NA chr2:173344273,chr2:173344265 chr2:172972978,chr2:172972981 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none FG-GAP_repeat(100%)| FG-GAP(100%),FG-GAP_3(100%)| 0 2 1 125 7 ENST00000684293.1 ENST00000448117.1 downstream upstream duplicates(1) AACCAACACAG___GTTCTCAAGGGTATATCACCTTATTTTGGATATTCAATTGCTGGAAACATGGACCTTGATCGAAATTCCTACCCTGATGTTGCTGTTGGTTCCCTCTCAGATTCAGTAACTATTTTCAG|GAACAAAAGCTCAGACCGCTGAGATGTTCACTCTGCACTTTCAGCAGCACTCACcTTGAGATATGAGAAGACTGCAACAAG___AACAAAAGGGTTGTGCCACCTCCTTTGGATGTGAAGAGGATGTGCTGACACGTGTGCTCGGGAGCCAGACTTTGTG...CACCATTATAGGTTCATCGCCGCCAGGTTTACCGCGACtCTCGGCGTTCTCGGGCtTCAGCGGAATGGG[t]TTTTAAACCGCGGAGGGAGGCCCAGGtGGAG...CAG___TTTCAGAGATGACAAGGAAAATCTTCATTACCATTTCAAGAACTGGGAACAAAGAAAAATCCCGTTCCAGGACGCAAAGGAGGAGATGCGGG PTQVLKGISPYFGYSIAGNMDLDRNSYPDVAVGSLSDSVTIFr|nkssdr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25728 NBAS::MYB ENSG00000151779.14::ENSG00000118513.20 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4334 FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15366580:- chr2:15307040-15701464:- chr2:15506704:- MYB ENSG00000118513.20 protein_coding + + chr6:135181308-135219173:+ chr6:135217864:+ chr6:135502446-135540311:+ chr6:135539002:+ chr2:15358612 chr6:135200884 NA NA chr2:15498736 chr6:135522022 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Neuroblastoma-amplified_sequence__N_terminal(100%),Secretory_pathway_protein_Sec39(85%)| Nbas_N(100%),Sec39(86%)| 1 0 0 4682 6373 ENST00000281513.10 ENST00000341911.10 upstream upstream none ATCGGATCAGTCTCATCAAGGAGTGTATTTCCCAGTCCCCCACATGCTATAAACAATCCACCAAGCTTCTGGGCCTTGCTGAGCTGCTGAGGGTTGCAG|CCTTGTAGCAGTACCTGGGAACCTGCATCCTGTGGAAAGATGGA RISLIKECISQSPTCYKQSTKLLGLAELLRVA|al* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myb myeloblastosis viral oncogene homolog 1 Yes adenoid cystic carcinoma epithelial oncogene, fusion translocation 25740 PLEKHA7::ENSG00000290957 ENSG00000166689.18::ENSG00000290957.1 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PLEKHA7 ENSG00000166689.18 protein_coding - - chr11:16777297-17014415:- chr11:17013989:- chr11:16798844-17035962:- chr11:17035536:- ENSG00000290957 ENSG00000290957.1 lncRNA + - chr11:17013998-17052993:+ chr11:17034686:- chr11:17035545-17074540:+ chr11:17056233:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 2 2 3 190 10 ENST00000531066.6 unknown upstream downstream mismappers(1) GCGGCGACGGTCGGGCGGGACACTTTACCTGAGCATTGGTCCTACGGGGTGTGCCGGGATGGCCGCGTCTTCTTCATCAA___TGACCAGCTCCGCTGCACGACCTGGCTGCATCCGCGCACCGGGGAGCCCGTCAACTCGGGCCACATGATCCGCTCAG___ACCTGCCCCGCGGCTGGGAGGAGGGCTTCACGGAGGAGGGCGCCAGCTACTTCATCGA|TTGGCATTTTTCTGTAAAGAAACACTTTCCCGGGGGTGGAGCCAAGATGGCCGAATAGGAACAGCTCCAGTCTACAGCTCCCAGCGTGAGCGACGCAGAAGACGGGTGATTTCTGCATTTCCAACTGAG___CTGTCTTCCCTAAACTCAGCCTCCTG AATVGRDTLPEHWSYGVCRDGRVFFINDQLRCTTWLHPRTGEPVNSGHMIRSDLPRGWEEGFTEEGASYFId|whfsvkkhfpgggakmae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25744 MYCNOS::AHI1 ENSG00000233718.9::ENSG00000135541.22 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MYCNOS ENSG00000233718.9 lncRNA - - chr2:15918350-15942249:- chr2:15940974:- chr2:16058473-16082371:- chr2:16081096:- AHI1 ENSG00000135541.22 protein_coding - + chr6:135283407-135498434:- chr6:135417558:+ chr6:135604545-135819572:- chr6:135738696:+ chr2:15938807,chr2:15938807,chr2:15938809,chr2:15938809,chr2:15938809 chr6:135367158,chr6:135367159,chr6:135367158,chr6:135367156,chr6:135367155 NA NA chr2:16078929,chr2:16078929,chr2:16078931,chr2:16078931,chr2:16078931 chr6:135688296,chr6:135688297,chr6:135688296,chr6:135688294,chr6:135688293 NA NA sense antisense unknown exon/splice-site intron translocation/5'-5' medium none none none 2 1 2 2971 110 ENST00000419083.6 unknown upstream upstream none TGGCTGCAGAATTCTAGCTCTCACGAGCACGCAGACAACCGCACTCGCAGCGGTGTGGGGCCGGCTGCTCAGGGGAAGCCCCAGGCTCTCCGACCCAGCTACCGGGAATG___GGGCACCCTTTGGAGAAGAACCCCAGCCTGGGGTGGGGACGCACCGGCTCTCCGACAGCTCAAACACAGACAGATCTTCTAGAGCCGAGGGAATTTCTTTTCGCAGAAGCCATTACTCCCCCCG|GTATTAATATGCCTTTCGGAAGGATTAAAATGGCCCAAATGGAAGCGGATAACACAAATAAATACAAACAATTATGAACACTTGTTTTTTTCATCTAAAGGAAATTTTCTATACAGAAGCCAACTGATTGGTATTCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25762 RIMS2::MAILR ENSG00000176406.25::ENSG00000253320.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4338 TRUE 1647 RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103501062:+ chr8:104512838-105266658:+ chr8:104513290:+ MAILR ENSG00000253320.7 lncRNA + + chr8:102864271-103002424:+ chr8:102977587:+ chr8:103876499-104014652:+ chr8:103989815:+ chr8:103549327 chr8:102976727 NA NA chr8:104561555 chr8:103988955 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none FYVE-type_zinc_finger(20%)| FYVE_2(0%)| 0 1 0 87 17 ENST00000696799.1 ENST00000659614.1 downstream upstream none TGGCCGTCATGGATAGGCAGAAGAAAGAAGAGGAGAAGGAGCAGTCtGTGCTCAA|AATCAGAAATCTGAGCGTAGGAAGAAGTGGGTTAGCCCTGGAGAAAGGAAAAGGAGGATCATGGTTCTCTGCAAAGAGCTGGAAGCTAAAAAGCAGGCTGTGTTTACTTACCAACCAGGACTCA AVMDRQKKEEEKEQSVLk|irnlsvgrsglalekgkggswfsakswklksrlclltnqd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25763 RIMS2::MAILR ENSG00000176406.25::ENSG00000253320.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4338 TRUE 1647 RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103501062:+ chr8:104512838-105266658:+ chr8:104513290:+ MAILR ENSG00000253320.7 lncRNA + + chr8:102864271-103002424:+ chr8:102992250:+ chr8:103876499-104014652:+ chr8:104004478:+ chr8:103549327 chr8:102976727 NA NA chr8:104561555 chr8:103988955 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none FYVE-type_zinc_finger(20%)| FYVE_2(0%)| 0 0 0 87 2 ENST00000696799.1 ENST00000520750.6 downstream upstream low_entropy(1) AGCCACCTCACGGAGGAGGAGAGGAAAATCATCCTGGCCGTCATGGATAGGCAGAAGAAAGAAGAGGAGAAGGAGCAGTCCGTGCTCAA|TATTCACGATAG...GAAAAAAGGCTGGGCGTGGTGGATCACTTCTGTAATCCTAGCACTTTGGGAGGCTGAG___AAGCTCTGAGGAGTGAATCCACAATACAGTTCAAAGAGAGA SHLTEEERKIILAVMDRQKKEEEKEQSVLn|ihd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25797 RCOR1::PPM1E ENSG00000089902.10::ENSG00000175175.6 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE TRUE 2370 TRUE 4344 TRUE 1648 RCOR1 ENSG00000089902.10 protein_coding + + chr14:102592649-102730561:+ chr14:102701330:+ chr14:103058986-103196898:+ chr14:103167667:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58972132:+ chr17:56833215-57062540:+ chr17:57049493:+ chr14:102707329,chr14:102707329 chr17:58971682,chr17:58971679 NA NA chr14:103173666,chr14:103173666 chr17:57049043,chr17:57049040 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none ELM2_domain(100%)|Protein_phosphatase_2C(62%) ELM2(100%)|PP2C(56%) 31 50 35 160 145 ENST00000262241.7 ENST00000308249.4 downstream upstream duplicates(7),mismatches(4) CCAAACTGGCAAGACGCAGTCAAGAACGGGACAATCTTGGCATGTTGGTCTGGTCACCCAATCAAAATCTGTCAGAAGCAAAGT___TGGATGAATACATTGCCATTGCCAAAGAAAAGCATGGGTACAACATGGAACAG|AGCTTAAGATGTGGGACCACAGGAGTGGTGACTTTCATCAGAGGCAACATGCTACATGTGGCCTGGGTGGGTGATTCCCAGGTTATGCTTGTGAGAAAGGGCCAAGCTGTTGAACTAATGAAGCCACACAAACCAGACAGAGAG___GATGAAAAGCAGAGAATTGAGGCCCTTGGAGGTTGCGTAGTCTGGTTTGGTGCCTGGAGGGTGAATGGAAGTCTGTCG KLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQ|SLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25798 RCOR1::PPM1E ENSG00000089902.10::ENSG00000175175.6 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4344 TRUE 1648 RCOR1 ENSG00000089902.10 protein_coding + + chr14:102592649-102730561:+ chr14:102701330:+ chr14:103058986-103196898:+ chr14:103167667:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58979974:+ chr17:56833215-57062540:+ chr17:57057335:+ chr14:102707329,chr14:102707329 chr17:58971682,chr17:58971679 NA NA chr14:103173666,chr14:103173666 chr17:57049043,chr17:57049040 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none ELM2_domain(100%)|Protein_phosphatase_2C(31%) ELM2(100%)|PP2C(1%) 0 1 3 160 323 ENST00000262241.7 ENST00000308249.4 downstream upstream none GGACAATCTTGGCATGTTGGTCTGGTCACCCAATCAAAATCTGTCAGAAGCAAAGT___TGGATGAATACATTGCCATTGCCAAAGAAAAGCATGGGTACAACATGGAACAG|GAGATGCTGAACATAAGCCATATATCTGTGGGGATGCAGATTCTGCCTCCACTGTTCTGGATGGGACCGAAGACTACCTCATTCTGGCCTGTGATGGCTTCTATGACACCGTGAACCCTGATGAGGCAGTGAAAGTTGTGTCCGAC DNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQ|emlnishisvgmqilpplfwmgpkttsfwpvmasmtp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25799 STAU1::TYW1 ENSG00000124214.21::ENSG00000198874.14 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE TRUE 2371 FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49188116:- chr20:47729876-47804904:- chr20:47804653:- TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67183126:+ chr7:66460160-66704501:+ chr7:66648113:+ chr20:49186376,chr20:49186380 chr7:67144712,chr7:67144708 NA NA chr20:47802913,chr20:47802917 chr7:66609699,chr7:66609695 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Radical_SAM_superfamily(14%),Wyosine_base_formation(100%) |Radical_SAM(0%),Wyosine_form(100%) 14 58 22 1123 213 ENST00000371828.7 ENST00000359626.10 upstream upstream duplicates(10),low_entropy(7),mismatches(15) CCGGCGGCTGCCGCGTCTCTCTCGGCTCCCGCTTCCTTTGACCGCCTCCCCCCCC?GGCCCGGCGGCGCCCGCCTCCTCCACGGCCACTCCGCCTCTTCCCTCCCTTCGTCCCTTCTTCCTCTCCCTTTTTTCCTTCTTCCTTCCCCTCCTCGCCGCCACCGCCCAGGACCGCCGGCCGGGGGACGAGCTCGGAGCAGCAGCCAG|CAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAACGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGGAATCCTGACTTCATCGAAGTGAAG___GGCGTTACCTACTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25803 LRP6::DUSP16 ENSG00000070018.9::ENSG00000111266.9 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE TRUE 2373 TRUE 4346 TRUE 1649 LRP6 ENSG00000070018.9 protein_coding - - chr12:12116025-12267044:- chr12:12203203:- chr12:12268959-12419978:- chr12:12356137:- DUSP16 ENSG00000111266.9 protein_coding - - chr12:12473282-12562863:- chr12:12500682:- chr12:12626216-12715797:- chr12:12653616:- chr12:12202880,chr12:12202888,chr12:12202891 chr12:12509753,chr12:12509758,chr12:12509758 NA NA chr12:12355814,chr12:12355822,chr12:12355825 chr12:12662687,chr12:12662692,chr12:12662692 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Low-density_lipoprotein_receptor_repeat_class_B(23%)|Dual_specificity_phosphatase__catalytic_domain(100%),Rhodanese-like_domain(7%) Ldl_recept_b(54%)|DSPc(100%),Rhodanese(39%) 13 4 8 75 106 ENST00000261349.9 ENST00000298573.9 upstream downstream low_entropy(2),mismatches(7) CTGGGGAGAAGTGCCAAAGATAGAACGTGCTGGAATGGATGGTTCAAGTCGCTTCATTATAATAAACAGTGAAATTTACTGGCCAAATGGACTGACTTTGGATTATGAAGAACAAAAGCTTTATTGGGCAGATGCAAAACTTAATTTCATCCACAAATCAAATCTGGATGGAACAAATCG|GTGGGTTTGCTGAGTTCTCTCGTTGTTTCCCTGGCCTCTGTGAAGGAAAATCCACTCTAGTCCCTACCTGCATTTCTCAGCCTTGCTTACCTGTTGCCAACATTGGGCCAACCCGAATTCTTCCCAATCTTTATCTTGGCTGCCAGCGAGATGTCCTCAACAAG___GAGCTGATGCAGCAGAATGGGATTGGTTATGTGTTAAATGCCAGCAATACCTGTCCAAAGCCTGACTTTATCCCCGAGTCTCAT WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNr|wvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 12397196|12419615 FALSE|FALSE 12674397|12674397 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25804 LRP6::DUSP16 ENSG00000070018.9::ENSG00000111266.9 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4346 TRUE 1649 LRP6 ENSG00000070018.9 protein_coding - - chr12:12116025-12267044:- chr12:12203203:- chr12:12268959-12419978:- chr12:12356137:- DUSP16 ENSG00000111266.9 protein_coding - - chr12:12473282-12562863:- chr12:12487187:- chr12:12626216-12715797:- chr12:12640121:- chr12:12202880,chr12:12202888,chr12:12202891 chr12:12509753,chr12:12509758,chr12:12509758 NA NA chr12:12355814,chr12:12355822,chr12:12355825 chr12:12662687,chr12:12662692,chr12:12662692 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Low-density_lipoprotein_receptor_repeat_class_B(23%)|Dual_specificity_phosphatase__catalytic_domain(93%),Rhodanese-like_domain(0%) Ldl_recept_b(54%)|DSPc(40%),Rhodanese(0%) 1 0 1 75 174 ENST00000261349.9 ENST00000298573.9 upstream downstream mismatches(1) TGGATCTTTACGAAAgGTTTTATTTTGGCgAGAGTTGGATCAACCCAGAGCTATTGCCTTAGATCgTTCAAGTGG___GTTCATGTACTGGACAGACTGGGGAG...GTTCAAGTCGCTTCATTATAATAAACAGTGAAATTTACTGGCCAAATGGACTGACTTTGGATTATGAAGAACAAAAGCTTTATTGGGCAGATGCAAAACTTAATTTCATCCACAAATCAAATCTGGATGGAACAAATCG|GAGCTGATGCAGCAGAATGGGATTGGTTATGTGTTAAATGCCAGCAATACCTGTCCAAAGCCTGACTTTATCCCCGAGTCTCATTTCCTGCGTGTGCCTGTGAATGAC SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNr|s* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 12397196|12419615 FALSE|FALSE 12674397|12674397 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25805 CARS1::OSBPL5 ENSG00000110619.18::ENSG00000021762.20 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3012195:- chr11:3022152-3078843:- chr11:3033425:- OSBPL5 ENSG00000021762.20 protein_coding - - chr11:3087107-3166739:- chr11:3129169:- chr11:3108337-3187969:- chr11:3150399:- chr11:3009952 chr11:3129958 NA NA chr11:3031182 chr11:3151188 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none tRNA_synthetases_class_I_(C)_catalytic_domain(100%)|Oxysterol-binding_protein_(100%),PH_domain(100%) tRNA-synt_1e(100%)|Oxysterol_BP(100%),PH(100%) 6 2 13 582 158 ENST00000397111.9 ENST00000263650.12 upstream downstream duplicates(5),mismatches(4) AGGACAGCTCCCTGGGATTCCCGGTCGGAGGGCCTGGAACCAGCCTCAGT___CTCGAGGCCACAGTCATGCCCTACCTTCAGGTGTTATCAGAATTCCGAGAAGGAGTGCGGAAGATTGCCCGAGAGCAAAAAG|AAGCCCCCGAGCGCCCACAGCATGAAGGAGGAGGCCTTCCTCCGGCGCCGCTTCTCCCTGTGTCCACCTTCCTCCACCCCTCAGAAAGTCGACCCCCGGAAGCTCACCCGGAACTTGCTCCTCAGCGGAGACAATGAGCTCTACCCACTCAGCCCAG___GGAAGcACATGGAGCCCAACGGCCCGTCGCTGCCCAGGGATGAAGGGCCCCCG DSSLGFPVGGPGTSLSLEATVMPYLQVLSEFREGVRKIAREQK|eaperpqheggglppapllpvstflhpsesrppeahpelapqrrq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 25807 CDC42EP1::BID ENSG00000128283.7::ENSG00000015475.19 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDC42EP1 ENSG00000128283.7 protein_coding + + chr22:37560480-37569405:+ chr22:37560588:+ chr22:37956487-37965412:+ chr22:37956595:+ BID ENSG00000015475.19 protein_coding - + chr22:17734138-17774770:- chr22:17740035:+ chr22:18216904-18257536:- chr22:18222801:+ chr22:37564172,chr22:37564172 chr22:17739794,chr22:17739791 NA NA chr22:37960179,chr22:37960179 chr22:18222560,chr22:18222557 NA NA sense antisense unknown 5'UTR/splice-site exon duplication/5'-5' high none none none 4 9 2 617 17 ENST00000249014.5 unknown downstream upstream low_entropy(1),mismatches(3) CAGCGACTCTCCCGGGCTGCCAGCCGGGACGCGCGGCCGCCGCCGCTGCAGACGACGAGTCCGCCCTCGTCCCGCGCCCCCGGGGCTCGCGGAGCCAG|TCCTCCTCCTCTGGCGCACAGCCTCCGTGCTGCCCCTGCCCGAGTACCACTGTCGCAGCTCCATGAAGGCCACGCTCAACTGCCACGCTCCCTGCCGCCTCCGTTTCTTCCTCAGCACTTGCTGTGTTATTGTCTGACGCCCCTGCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25808 DGCR2::BCL2L13 ENSG00000070413.20::ENSG00000099968.18 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DGCR2 ENSG00000070413.20 protein_coding - - chr22:19036282-19122454:- chr22:19089368:- chr22:19023795-19109967:- chr22:19076881:- BCL2L13 ENSG00000099968.18 protein_coding + - chr22:17628855-17730855:+ chr22:17681495:- chr22:18111621-18213621:+ chr22:18164261:- chr22:19089170,chr22:19089173 chr22:17682134,chr22:17682134 NA NA chr22:19076683,chr22:19076686 chr22:18164900,chr22:18164900 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Low-density_lipoprotein_receptor_domain_class_A(100%)| Ldl_recept_a(100%)| 0 2 7 639 8 ENST00000545799.5 unknown upstream downstream duplicates(2),mismappers(4),mismatches(1),multimappers(1) CACCGAGCCGCTGCGGCCAG___AGCTGCGGTGCAACCCTGGGCAGTTTGCGTGTCGCAGCGGCACCATCCAGTGCATCCCCCTCCCCTGGCAGTGTGACGGCTGGGCGACTTGCGAGGATGAGAGCGACGAAGCCAACTGTCCAG|ACGGAGTCTCGCTCTGTCCCCCAGGCTGGAGTACAGTGGCGCAAGCTCTGCTCACTGTAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGCCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCAGCGTGTTAGCCAGGATGGTCTCGATCTCCTGGCCCCGTGATCCACCTGCCTCGG...TGACCGCCACACCCTACAGCGCCATCCCAACTGGCACCATACCTGCTGACCAGACCTCGCAG___ACTGGTGGAATCTGCAGAGATATGGAAACT TEPLRPELRCNPGQFACRSGTIQCIPLPWQCDGWATCEDESDEANCP|dgvslcppgwstvaqalltvssasqvhailllpsswdyrrppphppnflyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25817 MMP24OS::STAU1 ENSG00000126005.17::ENSG00000124214.21 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4349 TRUE 1650 MMP24OS ENSG00000126005.17 protein_coding - - chr20:35201745-35278131:- chr20:35272005:- chr20:33789548-33865934:- chr20:33859808:- STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49174269:- chr20:47729876-47804904:- chr20:47790806:- chr20:35265448,chr20:35265455 chr20:49182676,chr20:49182680 NA NA chr20:33853251,chr20:33853258 chr20:47799213,chr20:47799217 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication medium none |Double-stranded_RNA_binding_motif(100%),Staufen_C-terminal_domain(100%) DUF3377(100%),Hemopexin(37%)|Staufen_C(100%),dsrm(100%) 8 0 0 142 978 ENST00000635104.1 ENST00000371828.7 upstream downstream duplicates(1) GTCACGGCGCCAGCTCCTCCCGACGCCGAG___ATTGGGTAACTCAAGGCGTCCCTGGAGTACACTGAGGATAAGTGTTTGAGAAATGCTGTCTGAAGGAATGAAGTCAGTCTATGACAACGTCTCTCTGCCGTGAATCATTCCTGCAGATGAAAAAGTGTGACTTGGCAGCTG|AGTTTATTAACCACTTAACCTCTCAGAACTGAACAAAGACAACATTGTTCCTGGAACGCCCTCTTTTTAAAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25818 MMP24OS::STAU1 ENSG00000126005.17::ENSG00000124214.21 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4349 TRUE 1650 MMP24OS ENSG00000126005.17 protein_coding - - chr20:35201745-35278131:- chr20:35267636:- chr20:33789548-33865934:- chr20:33855439:- STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49179244:- chr20:47729876-47804904:- chr20:47795781:- chr20:35265448,chr20:35265455 chr20:49182676,chr20:49182680 NA NA chr20:33853251,chr20:33853258 chr20:47799213,chr20:47799217 NA NA sense sense unknown intron 5'UTR/splice-site duplication medium none |Double-stranded_RNA_binding_motif(100%),Staufen_C-terminal_domain(100%) DUF3377(100%),Hemopexin(96%)|Staufen_C(100%),dsrm(100%) 0 1 1 22 143 unknown ENST00000340954.11 upstream downstream duplicates(1),mismappers(1) CTACTCCAAGTTGACCATCTTCAGAGCCGGGTACTCACTGGATCTTCACACACTCTTTGTTAGAGGAATGACTCCCCCAGGTTTCGGATGGAGAAACTGAG...CACAGACCAGAAGCCAGCTTCCAGCACTTTCTCCCAGCATTAACCCCAGGGGAG|GTGGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTTCCCACTTCAGCCTCCCGATAAGCTGAGATTACAG___AGTTTATTAACCACTTAACCTCTCAGAACTGAACAAAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25819 MMP24OS::STAU1 ENSG00000126005.17::ENSG00000124214.21 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4349 TRUE 1650 MMP24OS ENSG00000126005.17 protein_coding - - chr20:35201745-35278131:- chr20:35272005:- chr20:33789548-33865934:- chr20:33859808:- STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49179244:- chr20:47729876-47804904:- chr20:47795781:- chr20:35265448,chr20:35265455 chr20:49182676,chr20:49182680 NA NA chr20:33853251,chr20:33853258 chr20:47799213,chr20:47799217 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication medium none |Double-stranded_RNA_binding_motif(100%),Staufen_C-terminal_domain(100%) DUF3377(100%),Hemopexin(37%)|Staufen_C(100%),dsrm(100%) 1 0 1 142 143 ENST00000635104.1 ENST00000340954.11 upstream downstream duplicates(1) CCCAGACCCAGCTCAGACCTTCGTGACCACCCCATCCCTTTCTCCGGCTGGCTGGGTCGGGGGCATCCCTCTCTGTCGCTGGCTTCCAGAGGCAGGACAGG...CTGAGGATAAGTGTTTGAGAAATGCTGTCTGAAGGAATGAAGTCAGTCTATGACAACGTCTCTCTGCCGTGAATCATTCCTGCAGATGAAAAAGTGTGACTTGGCAGCTG|GTGGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTtGCGTGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTTCCCACTTCAGCCTCCCGATAAGCTGAGATTACAG___AGTTTATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25824 DDX27::TYW1 ENSG00000124228.15::ENSG00000198874.14 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DDX27 ENSG00000124228.15 protein_coding + + chr20:49219347-49244077:+ chr20:49219541:+ chr20:47835884-47860614:+ chr20:47836078:+ TYW1 ENSG00000198874.14 protein_coding + - chr7:66995173-67239514:+ chr7:67118875:- chr7:66460160-66704501:+ chr7:66583862:- chr20:49219717 chr7:67121261 NA NA chr20:47836254 chr7:66586248 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none none none 0 6 0 1062 23 ENST00000618172.5 unknown downstream downstream duplicates(2),mismappers(5),mismatches(1) CTTCTGCGACAACATGCTTGCGGACCTCGGCTTAATCGGAACCATAGGCGAGGATGACGAGGTGCCGGTGGAGCCCGAGTCTGACTCCGGGGACGAGGAAGAGGAG|ATAGGGGTCTCACTGTCACCCACGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTACAACCTCTGCCTCCCAGGCTCAAGTGATTCTCCCACCTTAGCCTCCTGAGTAGCTGGGACCACAGG MLADLGLIGTIGEDDEVPVEPESDSGDEEEE|igvslsptlecsgaisahynlclpgssdsptlas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25835 STAU1::TRIB3 ENSG00000124214.21::ENSG00000101255.12 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49174195:- chr20:47729876-47804904:- chr20:47790732:- TRIB3 ENSG00000101255.12 protein_coding + - chr20:362835-397559:+ chr20:369056:- chr20:343479-378203:+ chr20:349700:- chr20:49173169,chr20:49173210,chr20:49173175 chr20:369633,chr20:369511,chr20:369636 NA NA chr20:47789706,chr20:47789747,chr20:47789712 chr20:350277,chr20:350155,chr20:350280 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/5'-5' medium none none none 0 3 0 1027 12 ENST00000340954.11 unknown upstream downstream mismappers(1) GTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTTTCCCACTTCAGCCTCCCG...CACTTAACCTCTCAGAACTGAACAAAGACAACATTGTTCCTGGAACGCCCTCTTTTTAAAAAAG|GTGGAGCCAACAGGATTGCTGATGGTCTAtATGTGGAGTTTGAGGGAAAAGGAGGTGTCAAGGTGCTTCCAAGGTTTCTTGGCCTGAACGGTGACAGGTATGGAACTGCCATCAAATGACATGGAGCGAGGTGTTTGGGGGAAGCCCAGGTTCAGC...___CCACAAAGGCAGATGTGGAAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25866 EXOC4::LRGUK ENSG00000131558.15::ENSG00000155530.4 2313287 SRR8616168 SRR8639137 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2374 FALSE NA FALSE NA EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133938069:+ chr7:132937829-133751342:+ chr7:133622822:+ LRGUK ENSG00000155530.4 protein_coding + + chr7:134127299-134264595:+ chr7:134183734:+ chr7:133812052-133949347:+ chr7:133868486:+ chr7:133968638,chr7:133968639 chr7:134182917,chr7:134182915 NA NA chr7:133653391,chr7:133653392 chr7:133867669,chr7:133867667 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Sec8_exocyst_complex_component_specific_domain(100%)|Guanylate_kinase(100%) Sec8_exocyst(100%)|Guanylate_kin(100%) 2 2 12 171 18 ENST00000253861.5 ENST00000285928.3 downstream upstream duplicates(11),mismatches(3) AATTCCTCAACATGGTGTGCGTGAAGCTCCAGGAGTACAAGGACACCTGCACTGCAGCTTACAG___GGGTATTGTCCAGTCAGAAGAAAAACTTGTCATCAGT...GCAGACTCTTGAAATCTCTACCAAACTGGATGAATATGGCTCAACCCAAACAGCTGAGGCCAAAAAGAGAGGAGGAAGAAGATTTCATAAG___GGCAGCTTTTGGCAAGGAGTCTGAAGTTCTTATTGGGAACCTGGGTGATAAATTAATCCCTCCACAAGACATCCTTCGTGACGTCAGTGACCTCAAAGCCTTGGCCAACATGCATGAAAGCCTGGAATGGTTGGCAAGTCGAACAAAGTCAGCTTTCTCCAATCTTTCTACATCCCAGA|CACTCTTCCCAGCCTGGATGCtCCTTATCCCATGCTGATACTAGCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATATGG___GGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAGACGTTTTTGATGAAATGGTGAACATG___GGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTAAATAGGGACACCGTAGAAGGTA RLLKSLPNWMNMAQPKQLRPKREEEEDFIRAAFGKESEVLIGNLGDKLIPPQDILRDVSDLKALANMHESLEWLASRTKSAFSNLSTSQ|tlfpawmllipc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6133 chr7:133290881-133290988:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25873 TSPAN4::MOB2 ENSG00000214063.12::ENSG00000182208.15 2313287 SRR8616168 SRR8639137 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TSPAN4 ENSG00000214063.12 protein_coding + + chr11:842812-867116:+ chr11:864881:+ chr11:842812-867116:+ chr11:864881:+ MOB2 ENSG00000182208.15 protein_coding - + chr11:1469457-1501247:- chr11:1489703:+ chr11:1490687-1522477:- chr11:1510933:+ NA NA NA NA NA NA NA NA sense antisense unknown exon intron deletion/5'-5' low none Tetraspanin_family(46%)| Tetraspanin(89%)| 0 0 2 17 5 ENST00000464987.5 unknown downstream upstream mismappers(2) CAGGCCTGGAGGGGCAGCGCCAGCGACCCTGGGAGGCTGTGCTGTGGCTCTATAGCGACTGGGGCACAAGGGCACTGCTACCCCACCCGGAGGGTGCGCCCC...GTCCTGAGCCGTCTGCTCCCAGCGCCCCATCCGGGCCGCGCACCGTGGGGTTCTgCTCTGTAGAGCGGCCTCTTCTTGGTCACTCACTCATATATTCAGCC...|...TGGCTATTGAGGtTGCACTCCGAGCTAGAACACAACACTACTTTGTTTTGTGAATCACACTGTCCGTCCTTGGCCCTGGGGAGCTtCTGCCgTCtGCTGCTGGGTCCCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25882 SLCO1B3-SLCO1B7::CCDC91 ENSG00000257046.5::ENSG00000123106.11 2313287 SRR8616168 SRR8639137 STOMACH carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SLCO1B3-SLCO1B7 ENSG00000257046.5 protein_coding + + chr12:20815674-21090245:+ chr12:20858571:+ chr12:20968608-21243179:+ chr12:21011505:+ CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28305649:+ chr12:28286182-28734444:+ chr12:28458582:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion low none Organic_Anion_Transporter_Polypeptide_(OATP)_family(6%)| OATP(1%)| 1 0 0 1386 151 ENST00000381541.7 ENST00000539107.5 downstream upstream duplicates(1) CAAATAGAAAGGAGATTTGACATATCCTCTTCTCTTGCTGGTTTAATTGATGGAAGCTTTGAAATTG___GAAATTTGCTTGTGATTGTATTTGTAAGTTACTT...AAGTATTTTGACAgCTTTACCACATTTCTTCATGGGATA|TATCTGGAGTCCATCTTTCACCATCTTCTCCTGAGATTGTACTGGACCGTGACCACTCTTCT SILTaLPHFFMGy|iwspsftifs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25884 GTDC1::ARHGAP15 ENSG00000121964.15::ENSG00000075884.14 22RV1 SRR8616169 SRR8639138 PROSTATE carcinoma primary arriba TRUE TRUE TRUE 2375 TRUE 4356 TRUE 1651 GTDC1 ENSG00000121964.15 protein_coding - - chr2:143938068-144332568:- chr2:144208603:- chr2:144695635-145090135:- chr2:144966170:- ARHGAP15 ENSG00000075884.14 protein_coding + + chr2:143091362-143768352:+ chr2:143487373:+ chr2:143848931-144525921:+ chr2:144244942:+ chr2:144201265,chr2:144201268 chr2:143470858,chr2:143470855 NA NA chr2:144958832,chr2:144958835 chr2:144228427,chr2:144228424 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF3524)(33%)|RhoGAP_domain(100%) DUF3524(0%)|RhoGAP(100%) 26 34 37 104 82 ENST00000682281.1 ENST00000295095.11 upstream upstream duplicates(26),mismatches(1) GATCATCAG___ATTGTGCTTCAAGAAGACCATAGGGAAGAACGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA___GATCTGAAGGTTTGAATGGGCCAATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAGAGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTTATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAG|TGTTCAGACTGCATCACAGTGCTTCCGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAG___ATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCCACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAG___GTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTAT MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYs|vqtasqcfrykrqkss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25885 GTDC1::ARHGAP15 ENSG00000121964.15::ENSG00000075884.14 22RV1 SRR8616169 SRR8639138 PROSTATE carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4356 TRUE 1651 GTDC1 ENSG00000121964.15 protein_coding - - chr2:143938068-144332568:- chr2:144208603:- chr2:144695635-145090135:- chr2:144966170:- ARHGAP15 ENSG00000075884.14 protein_coding + + chr2:143091362-143768352:+ chr2:143519266:+ chr2:143848931-144525921:+ chr2:144276835:+ chr2:144201265,chr2:144201268 chr2:143470858,chr2:143470855 NA NA chr2:144958832,chr2:144958835 chr2:144228427,chr2:144228424 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF3524)(33%)|RhoGAP_domain(100%) DUF3524(0%)|RhoGAP(100%) 0 1 13 104 63 ENST00000682281.1 ENST00000295095.11 upstream upstream duplicates(1) CGCATTTTCATCTTGCTGCAAAAGTTGCAATAGAA___GATCTGAAGGTTTGAATGGGCCAATGAGTATCCTCATCATTGAAGCATTCTATGGAGGCTCCCATAAACAGCTGGTGGATCTTCTTCAAGAAGAGTTAGGAGACTGTGTCGTTTATACCCTTCCTGCAAAGAAATGGCATTGGAGAGCCCGGACATCTGCTTTATATTTCTCTCAGACCATTCCCATCAGTGAGCATTACAG|ATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCCACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAG___GTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAG___AAGAGAAGCTGAATTTG MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYr|snfwlssaqsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25887 PRKRA::ENSG00000287451 ENSG00000180228.14::ENSG00000287451.1 22RV1 SRR8616169 SRR8639138 PROSTATE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKRA ENSG00000180228.14 protein_coding - - chr2:178431292-178451512:- chr2:178450242:- chr2:179296019-179316239:- chr2:179314969:- ENSG00000287451 ENSG00000287451.1 lncRNA - + chr2:115835129-115940291:- chr2:115905788:+ chr2:116592705-116697867:- chr2:116663364:+ chr2:178449288,chr2:178449290 chr2:115882194,chr2:115882192 NA NA chr2:179314015,chr2:179314017 chr2:116639770,chr2:116639768 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Double-stranded_RNA_binding_motif(34%)| dsrm(2%)| 1 1 4 193 11 ENST00000457633.2 unknown upstream upstream mismatches(1) GTCCCTTCTCGCCATGTCCCAGAGCAGGCACCGCGCCGAGGCCCCGCCGCTGGAGCGCGAGGACAGTGGGACCTTCAG___...CGGTGGCGGTTAAAACTGGCCTCTACGCTTCTGCTTCAATCTCCAATTTGGCATGCAAAGCACACCTTTTTGTGGTTTTTGCAGTTTGGGGAAGATGATAACAGCTAAGCCAGGGAAAACACCGATTCAGGTATTACACGAATACGGCATGAAGACCAAGAACATCCCAGTTTATGAATGTGAAAGATCTGATGTGCAAATACACGTGCCCACTTTCACCTTCAGAGTAACCGTTGGTGACATAACCTGCACAG|GGCCTTTCTCAACATATGGTTTATTATAGCGTTGTGAATGATTGGTCTTTCATAAGGACATTTTCCTTGGCAGAAGGCTATTTGAAGTTCATTGCTTTTACAAG___TTACATGCAAGTAAAAAGGACCTTGCTATCAAGATGTATTTGAAGAAAAAAATGGAAG...ATTATATTTCAAGACTTTCAATAAAGCTATAATAATTATGATAAAGTGGAATTATAAAGGAATACAAATAGAACAATGTACCAAAATAGGACTACAGGCT MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT|gpfstygll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25888 WWOX::ADAMTS18 ENSG00000186153.19::ENSG00000140873.16 22RV1 SRR8616169 SRR8639138 PROSTATE carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ ADAMTS18 ENSG00000140873.16 protein_coding - + chr16:77247813-77435034:- chr16:77382884:+ chr16:77281710-77468931:- chr16:77416781:+ chr16:78341601,chr16:78341933,chr16:78341596 chr16:77373994,chr16:77374037,chr16:77373986 NA NA chr16:78375498,chr16:78375830,chr16:78375493 chr16:77407891,chr16:77407934,chr16:77407883 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none WW_domain(100%),short_chain_dehydrogenase(33%)| KR(15%),WW(100%),adh_short(4%),adh_short_C2(15%)| 0 2 2 61 4 ENST00000683929.1 unknown downstream upstream none CAGGAATAG___GGTTCGAAACCGCCAAGTCTTTTGCCCTCCATGGTGCACATGTGATCTTGGCCTGCAGGAACATGGCAAGGGCGAGTGAAGCAGTGTCACGCATTTTAGAAGAATGG|CATCCTTGGAAAGCGGCGGCTTGAATGTCTGGGAGGAGAAGATCCTACCTCATATCCAT___AGTTGTTTTTTCC...TGCAGCCCCGTCCAATCCAAATGCAGCATCTAGTAGCTTCTCTAGCATCTTCTACCTCTTATTTTTTCTTTTAACTGAATTCCAGCTACATTCACTCCATT...GGGAAACAGATTTTGAGTGCAAACCTCAATTCCACTGTACTATATAATCATACATACCTAGGATTTCTCTATAAGTTCTTCTCTATAAGTCTGCAGAACCA GIGFETAKSFALHGAHVILACRNMARASEAVSRILEEW|hpwkaaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25935 KLF10::ENSG00000259199 ENSG00000155090.15::ENSG00000259199.2 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLF10 ENSG00000155090.15 protein_coding - - chr8:102648784-102655725:- chr8:102655566:- chr8:103661012-103667953:- chr8:103667794:- ENSG00000259199 ENSG00000259199.2 lncRNA - - chr15:98038571-98293199:- chr15:98149060:- chr15:98581800-98836428:- chr15:98692289:- chr8:102653082,chr8:102653087 chr15:98176419,chr15:98176421 NA NA chr8:103665310,chr8:103665315 chr15:98719648,chr15:98719650 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none none none 85 66 300 1325 247 ENST00000285407.11 unknown upstream downstream duplicates(44),low_entropy(3),mismatches(27) CGGCGGCGGGAGCGGCGTCGAGTGTCTCCGTGCGCCCGTCTGTGGCCAAGCAGCCAGCAGCCTAGCAGCCAGTCAGCTTGCCGCCGGCGGCCAAGCAGCCAACCATGCTCAACTTCGGTGCCTCTCTCCAGCAGACTGCG|GGCATGTCATTGGTGGTACACTTTACAGTTATCAAATACTGAGGCTAGATCATGAAGGAACTAGAGGATGAATGGACATTACCCCTGGATGCTGGTCTTGAACACAGATGCCGTAACCATAATCCTTCAGGTTGTCCAACTTCTGGAATGGG...___GTGAAGCTGTTTTCATCTTGGCCCCAGGAGCTTGTCCTCATTTTCTGAGGCGACAGAAGAGGAACTGAG MLNFGASLQQTA|gmslvvhftviky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25937 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 2376 TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47294030:+ chr8:48173470-48648868:+ chr8:48206619:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129855747:- chr8:130851839-131029750:- chr8:130867993:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4502)(45%)|CYRIA/CYRIB_Rac1_binding_domain(72%) DUF4502(9%)|DUF1394(35%) 47 24 63 234 701 ENST00000297423.9 ENST00000699094.1 downstream downstream duplicates(5),mismatches(10) AAGACACTTTCTCAGTTACAGAGAG___ATGAATTACAGTTTATCGACTGGGAGATTGACAGTGACAGGGCAGAGGCTAGTGACTGTGATGAATTTGAAGATGACGAGGGTGCTGTGGAAATCTCAGACTGTGCTTCTTGTGCAAGTAATCAGTCTTTGACAAGTGATGAGAAGCTGTCGGAGCTTCCCAAG|AAGCAGCATTAAGAGGTCTTCTGGGAGCCTTAACAAGTACCCCATATTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAATTCTTCATTTCACACTCCGGTTTGATGAACTCAAG___ATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAGAACATTGAGTCGTATGAGGATTAACAATGTACCG KTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPK|kqh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25938 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 2377 TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47291137:+ chr8:48173470-48648868:+ chr8:48203726:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129855747:- chr8:130851839-131029750:- chr8:130867993:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4502)(30%)|CYRIA/CYRIB_Rac1_binding_domain(72%) DUF4502(9%)|DUF1394(35%) 26 27 29 431 701 ENST00000297423.9 ENST00000699094.1 downstream downstream duplicates(3),low_entropy(3),mismatches(6),multimappers(1) GTTTCAGAACACTTCTGGGAATCCG___TCATTAACAGCTGAAGAGAAGACGATTACAGAAAAGCACCTTGAATTATGCCCTAGACCCAAGCAAG___AAACCACCACATCTAAAAGCACCAGTGGGCTTACAGACATAACATGGAGCTCCAGTGGAAGTGATTTGTCGGATGAAGATAAGACACTTTCTCAGTTACAGAGAG|AAGCAGCATTAAGAGGTCTTCTGGGAGCCTTAACAAGTACCCCATATTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAATTCTTCATTTCACACTCCGGTTTGATGAACTCAAG___ATGACAAATCCTGCCATACAGAATGATTTCAGCT FQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQR|eAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25939 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47294030:+ chr8:48173470-48648868:+ chr8:48206619:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129854343:- chr8:130851839-131029750:- chr8:130866589:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4502)(45%)|CYRIA/CYRIB_Rac1_binding_domain(57%) DUF4502(9%)|DUF1394(31%) 1 1 16 234 721 ENST00000297423.9 ENST00000699094.1 downstream downstream mismatches(1) CTTTCCAGGAGAAAGACCACTGCAGGTCAGAAGAGCAGGTCTCAGGACAGCAGGGGCAGCTGCCTCcCTCTCTGAAGCATGGCTCAGGTGTGGAGcAGGGT...GAGCTCCAGTGGAAGTGATTTGTCGGATGAAGATAAGACACTTTCTCAGTTACAGAGAG___ATGAATTACAGTTTATCGACTGGGAGATTGACAGTGACAGGGCAGAGGCTAGTGACTGTGATGAATTTGAAGATGACGAGGGTGCTGTGGAAATCTCAGACTGTGCTTCTTGTGCAAGTAATCAGTCTTTGACAAGTGATGAGAAGCTGTCGGAGCTTCCCAAG|ATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAGAACATTGAGTCGTATGAGGATTAACAATGTACCG___GCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAATGTCTTTGTTTTATGCTGAGGCAACTCCAATGCTGAAAACCTTGA SSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPK|MTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25940 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47280017:+ chr8:48173470-48648868:+ chr8:48192605:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129855747:- chr8:130851839-131029750:- chr8:130867993:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Domain_of_unknown_function_(DUF4502)(14%)|CYRIA/CYRIB_Rac1_binding_domain(72%) DUF4502(5%)|DUF1394(35%) 0 1 9 392 701 ENST00000541342.2 ENST00000699094.1 downstream downstream none TGCGCTCAGGCGGCGCTCCCGGAGATGCCCCGCGGCAGCCGCGCTCGGGGCTCTAAG___AGAAAAAGGAGTTGGAATACAGAATGCCCATCCTTTCCAGGAGAAAGACCACTGCAGGTCAGAAGAGCAGGTCTCAGGACAGCAGGGGCAGCTGCCTCTCTCTCTGAAGCATGGCTCAGGTGTGGAGAAGGGTTTCAGAACACTTCTGGGAATCCG|AAGCAGCATTAAGAGGTCTTCTGGGAGCCTTAACAAGTACCCCATATTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAATTCTTCATTTCACACTCCGGTTTGATGAACTCAAG___ATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAG MAQVWRRVSEHFWES|eAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25946 SINHCAF::DENND5B ENSG00000139146.14::ENSG00000170456.16 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 2378 FALSE NA FALSE NA SINHCAF ENSG00000139146.14 protein_coding - - chr12:31280584-31327058:- chr12:31326024:- chr12:31433518-31479992:- chr12:31478958:- DENND5B ENSG00000170456.16 protein_coding - - chr12:31382226-31591136:- chr12:31402643:- chr12:31535160-31744070:- chr12:31555577:- chr12:31325403,chr12:31325410 chr12:31405897,chr12:31405901 NA NA chr12:31478337,chr12:31478344 chr12:31558831,chr12:31558835 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |PLAT/LH2_domain(100%),RUN_domain(48%) |PLAT(100%),RUN(17%) 16 25 7 687 230 ENST00000337682.9 ENST00000389082.10 upstream downstream duplicates(4),mismatches(18) GGAGACTATCTTTCTAGACAAGGCAGTTGAGGAGGAGGGAGCGCTTGAGGGGGACTGGCCTGGCGTGCACTCCGCACCTCGGGGACATTATTGCGCGTGGAACGGCTGCTTTTGGAAG|TGATTCCGTATAGGTCAGTGATCATCCCAATCAAAAAGCTGAGCAATGCAATAATCACATCAAACCCTTGGATCTGTGTATCAGGAGAGCTGGGAGACACAGGAGTAATGCAGATTCCCAAAAACCTCCTCGAAATGACCTTTGAG___TGCCAGAACTTGGGGAAGCTGACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25947 MSC-AS1::ENSG00000259560 ENSG00000235531.11::ENSG00000259560.2 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 4363 TRUE 1653 MSC-AS1 ENSG00000235531.11 lncRNA + + chr8:71828167-72118393:+ chr8:71965534:+ chr8:72740402-73030628:+ chr8:72877769:+ ENSG00000259560 ENSG00000259560.2 lncRNA - - chr15:87325829-87703852:- chr15:87406481:- chr15:87869060-88247083:- chr15:87949712:- chr8:71997080 chr15:87417164 NA NA chr8:72909315 chr15:87960395 NA NA sense sense unknown exon/splice-site intron translocation high none none none 3 6 34 278 20 ENST00000655314.1 unknown downstream downstream none ATGTAAAGCCAGTATTATAGGACACTTCTCAGACTGAGAGCCCAATGTCGTTGGAAACCACTGGGCCACAGGAAAGGCAG___GCTCTCTCAGTCCTGCTCCTGCCATGGAAGAAGCCTGCTCCCACCATGCCTTCTGCCACGAGTAAAAGTTCCCTGAGGCCTCCCCAGAAGCAGATGCTGTCGTGCTTCCTGTATAGCTGCAGAACT|GGTACTATTGAGAACCAACTAACTTGGAGCCGTGTATGAGCCACTGGGAATAGACTAAATGAGATAATCAACGTCTTGATCTCATATTCTTTCATTCTACAGAAGGAAGCAGGCAACAG___GTTGCAATACGAAGTGGAGTTAAAGCAACTAGAAGGAAGTGTCAGTAACCAAGCTGAGAGAGGCTGGAAGGAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25948 MSC-AS1::ENSG00000259560 ENSG00000235531.11::ENSG00000259560.2 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA TRUE 4363 TRUE 1653 MSC-AS1 ENSG00000235531.11 lncRNA + + chr8:71828167-72118393:+ chr8:71963048:+ chr8:72740402-73030628:+ chr8:72875283:+ ENSG00000259560 ENSG00000259560.2 lncRNA - - chr15:87325829-87703852:- chr15:87326830:- chr15:87869060-88247083:- chr15:87870061:- chr8:71997080 chr15:87417164 NA NA chr8:72909315 chr15:87960395 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 3 2 2 470 96 ENST00000518916.5 ENST00000665121.1 downstream downstream none GGAGTTGGGGCGCCCGGAGCGTGGAGTGGGGAGACCTGATGCAGAGAGTCTGGAGTCGGAGCTGGGGGTGCTGCAG___GAAAATATTTGCAATACCTGCCACGTCCAAGGTTCAGCTGAGGCCAATGTAAAGCCAGTATTATAGGACACTTCTCAGACTGAGAGCCCAATGTCGTTGGAAACCACTGGGCCACAGGAAAGGCAG|AGTGCCACATCATTGTTATTCCCCCAAGATCCTGGATTCCAGACAGCCCAGTGGAGCACCATAGAAAGAACTTTCAGGAAGCAGAGAATGGTTCAGGGATTCTGATTTTCCTGAACTTCCTCCTCCCTATCCACCTCCAATTAGGAAAAAAGAAGAAAAAAAAGATTAAACACGTCCAGAATGTTAAAAATCCAGTAGGGATTTTAAATGTTCACTATTACAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25953 ARID1A::ATP5IF1 ENSG00000117713.21::ENSG00000130770.18 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 2380 FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ ATP5IF1 ENSG00000130770.18 protein_coding + + chr1:28236109-28246906:+ chr1:28246589:+ chr1:28562620-28573417:+ chr1:28573100:+ chr1:26709393,chr1:26709387 chr1:28244016,chr1:28244002 NA NA chr1:27035884,chr1:27035878 chr1:28570527,chr1:28570513 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Mitochondrial_ATPase_inhibitor__IATP(2%) |IATP(0%) 3 18 5 67 95 ENST00000324856.13 ENST00000468425.2 downstream upstream mismatches(6) GCGGCCGCCTCGGGAGGGGCCCAACAAAGGAGCCACCACGCGCCCATGAGCCCCGGGAGCAGCGGCGGCGGGGGGCAGCCGCTCGCCCGGACCCCTCAG|AGCACTTGGAGCTACCTTCTGTTTCTTTGCTGTAGAAGCCGTTGTGTGAACAAATCCGTTTATTTCTCTCATCAGTCTCCTTTGATAGACATTTGGGTCACGTCCGGTTTTACGCTTTTACAATACATCAGTGAACAGCAGTAATACGAGCTCAAGACAGAAGGCCTGAAAAACATTGAAAAACACAGAGACGGAAAAAAAAAAACCACAGAGGGGGAAATATAATTTCG AAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQ|stwsyllflccrsrcvnksvyfshqsplidiwvtsgftllqyiseqq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 25954 ARID3A::TMEM259 ENSG00000116017.11::ENSG00000182087.14 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE TRUE 2381 FALSE NA FALSE NA ARID3A ENSG00000116017.11 protein_coding + + chr19:925781-975939:+ chr19:960164:+ chr19:925781-975939:+ chr19:960164:+ TMEM259 ENSG00000182087.14 protein_coding - - chr19:1009648-1021179:- chr19:1014473:- chr19:1009647-1021178:- chr19:1014472:- chr19:962641 chr19:1016087 NA NA chr19:962641 chr19:1016086 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none ARID/BRIGHT_DNA_binding_domain(17%)|Tumour-associated_protein(88%) ARID(0%)|Membralin(50%) 6 8 9 42 394 ENST00000263620.8 ENST00000593068.7 downstream downstream mismatches(1),multimappers(1) CTGGGCCCCCCAGGCCCTGCCAGCTTGGGCACCACGGCACTGTTCCCCCGAAAGGCCCAGCCACCCCAGGCCTTCCGCGGCGATGGCG...CCAGGAGCGGCCGGGGCCTGGCCCTGCCCACCCCGGAGGGGCCGCCCACGTAGCCCCGCAGCTGCAGCCGCCTGACCACGGCGACTGGACTTACGAGGAGCAGTTTAAGCAG___CTCTACGAACTCGACGGGGACCCCAAGAGGAAGGAATTCCTGGATGACTTGTTCAGCTTCATGCAGAAGCGAG|GCCCTGTTTGTGCTCTTCGTCCTGGCCTACATCCACATCGTCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCAcGTGCGTGACAAGTGGCCGCGTGAGGGCATCCTGCGTGTGGAAGTGCGGCACAACTCGAGCCGCGCGCCCGTCTTCCTACAGTTCTGTGACAGCGGCGGCCGCGGGAGCTTCCCGGGCCTGGCCGTGGAACCAGGCAGCAACCTGGACATGGAAGATGAGGAGGAGGAAGAGCT QERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKR|gpvcalrpglhphrllplahqlpgara* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25956 CDK8::LATS2 ENSG00000132964.13::ENSG00000150457.9 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK8 ENSG00000132964.13 protein_coding + + chr13:26254104-26420982:+ chr13:26353880:+ chr13:26828241-26995119:+ chr13:26928017:+ LATS2 ENSG00000150457.9 protein_coding - - chr13:20973036-21061586:- chr13:21046230:- chr13:21547175-21635725:- chr13:21620369:- chr13:26366648,chr13:26366649 chr13:21058030,chr13:21058029 NA NA chr13:26940785,chr13:26940786 chr13:21632169,chr13:21632168 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion high none Protein_kinase_domain(40%)|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) PK_Tyr_Ser-Thr(71%),Pkinase(68%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 6 2 5 69 36 ENST00000536792.5 ENST00000382592.5 downstream downstream duplicates(1),mismatches(1) GAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGG___GAAGGATGATAAAGACTATGCTTTAAAACAAATAGAAGGAACTGGGATCTCTATGTCG...GCTGAACATGACCTCTGG___CATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTACCTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGGTGTTGCACAGAGATTTG|AGAGTGATAATCTTCAAAATGAAGACTTTGGAAAATTTTAGGTTCTCTATAGGAACTACAAAAATGGAAGGAAAGAACATTTTCAAAAGGAAATTATTTTGAAAGTATGTTTACAACAAACTGATACTATTGACAGTTTTTTTTTTTA AEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDL|rviifkmktlenfrfsigttkmegknifkrklf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 8 CMGC CDK CDK8 P49336 TRUE FALSE Serine/threonine-protein kinase LATS2 AGC NDR Q9NRM7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE large tumor suppressor kinase 2 1 Yes malignant mesothelioma epithelial TSG large_deletion, frameshift, nonsense 25964 TOM1L2::NOL4 ENSG00000175662.18::ENSG00000101746.16 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- NOL4 ENSG00000101746.16 protein_coding - + chr18:33851100-34224952:- chr18:34200056:+ chr18:31431064-31804916:- chr18:31780020:+ chr17:17919830,chr17:17919835 chr18:34160731,chr18:34160726 NA NA chr17:17823144,chr17:17823149 chr18:31740695,chr18:31740690 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none VHS_domain(7%)| VHS(0%)| 3 1 3 107 4 ENST00000581396.5 unknown upstream upstream mismatches(1) CGGGAGTCCGGCGGGTTACAGCGGAGGCCTAGGTGGCAGACAGGGGGCCCGGGCCGCTGCGTGTTGTCCACCCAAGATGGAGTTCCTCCTGGGGAACCCGTTCAGCACACCAGTGGGGCAGTGCCTCG|ACCCTGGCACCATCTACAGAGTGTCATCACAGAAGTAAGCAAACTAAGAGTTGACAGAGAAATAAACATGTTACTTTTTATTGGAGAAGAAAACTACTACTATGAGGAAAAGCTCATTAGAAACTTCATTTTCAGCCATCGCTTTTAGCAGTTTATAAACTGGACCACAAGCCCTGTTGACCTGGTAGCACTTCATTGGCTGTTCTTCCTGTAATTAATATATCCTGATAAACCAAACAAAACGTGCCTCATAAAGAGATGAAATTGTCTCAGTACCGGTGCCAGATCGTAAT MEFLLGNPFSTPVGQCL|dpgtiyrvssqk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 25985 ATP6V1H::SAMD12-AS1 ENSG00000047249.18::ENSG00000281641.3 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP6V1H ENSG00000047249.18 protein_coding - - chr8:53715543-53843558:- chr8:53743577:- chr8:54628103-54756118:- chr8:54656137:- SAMD12-AS1 ENSG00000281641.3 lncRNA + + chr8:118620498-118906155:+ chr8:118668450:+ chr8:119632737-119918394:+ chr8:119680689:+ chr8:53739492,chr8:53739496 chr8:118654847,chr8:118654843 NA NA chr8:54652052,chr8:54652056 chr8:119667086,chr8:119667082 NA NA sense sense unknown CDS/splice-site exon/splice-site inversion medium none V-ATPase_subunit_H(99%)| V-ATPase_H_C(50%),V-ATPase_H_N(100%)| 2 1 2 1671 5 ENST00000518072.1 ENST00000625758.3 upstream upstream duplicates(1) CAGGACCTTAG___TTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGGTTGGAATGGAGTCCTGTGCACAAATCTGAGAAATTTTGGAGAGAGAATGC...CCTCACCACGTCTCTCCCGTTTGCAGGGTCATCGAGCAGCTCGGTGGGAAGCAGCTGGTCATGAACCACATGCATCATGAAGACCAGCAGGTCCGCTATAATGCTCTGCTGGCCGTGCAGAAGCTCATGGTGCACAACTG|GTCCCAAGATTTTGACTGATTGGTTGTACGACTAGAGTTGCTGGAGTTCAAGTATTTTCATTTTAACTATTCAACTGAAAGCAGTGCGTTACAACAGAACACGGGTTCCAAAGAATTTACTGAGAAGAAGCAAAGTAATACTTGGGAGAACT___ATAATACACAGGCATCTCATGAAAAT...AATGGCTTCTGTTCCGATTGAACCTTGACTGATGTAGCACCTATCACCAAATTGCTGTTCAGGAAATATGTCCTAAAGAAACTCCCAACAGCAGCAATACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26034 TAOK1::CCL13 ENSG00000160551.12::ENSG00000181374.8 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE TRUE 2383 FALSE NA FALSE NA TAOK1 ENSG00000160551.12 protein_coding + + chr17:29390363-29551903:+ chr17:29502723:+ chr17:27717381-27878921:+ chr17:27829741:+ CCL13 ENSG00000181374.8 protein_coding + + chr17:34356480-34358610:+ chr17:34358026:+ chr17:32683499-32685629:+ chr17:32685045:+ chr17:29507081,chr17:29507077,chr17:29507072 chr17:34357519,chr17:34357512,chr17:34357512 NA NA chr17:27834099,chr17:27834095,chr17:27834090 chr17:32684538,chr17:32684531,chr17:32684531 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(100%)|Small_cytokines_(intecrine/chemokine)__interleukin-8_like(43%) PK_Tyr_Ser-Thr(100%),Pkinase(100%)|IL8(12%) 45 30 64 416 110 ENST00000261716.8 ENST00000225844.7 downstream upstream duplicates(46),mismatches(7) AGGAACAGTTAATAGTGTTGGAAGTAATCAATCCATTCCCAGCATGTCCATCAGTGCCAGCAGCCAAAGCAGTAGTGTTAACAGTCTTCCAGATGTCTCAGATGACAAGAGTGAGCTAGACATGATGGAGGGAGACCACACAGTGATGTCTAACAGTTCTGTTATCCATTTAAAACCA___GAGGAAGAAAATTACAGAGAAGAGGGAGATCCTAGAACAAGAGCATCAGATCCACAATCTCCACCCCAAGTATCTCGTCACAAATCACACTATCGTAATCGAGAACACTTTGCTACTATACGGACAGCATCACTG|CTTCAGAACCAAACTGGGCAAGGAGATCTGTGCTGACCCAAAGGAGAAGTGGGTCCAGAATTATATGAAACACCTGGGCCGGAAAGCTCACACCCTGAAGACTTGAACTCTGCTACCCCTACTGAAATCAAGCTGGAGTACGTGAAATGACTTTTCCATTCTCCTCTGGCCTCCTCTTCTATGCTTTGGAATACTTCTACCATAATTTTCAAATAGGATGCATTCGGTTTTGTGATTCAAAATGTAC GTVNSVGSNQSIPSMSISASSQSSSVNSLPDVSDDKSELDMMEGDHTVMSNSSVIHLKPEEENYREEGDPRTRASDPQSPPQVSRHKSHYRNREHFATIRTASL|lqnqtgqgdlc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4523 chr17:29390662-29390730:+ FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase TAO1 STE STE20 TAO Q7L7X3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26036 TIAM1::ATP5PO ENSG00000156299.15::ENSG00000241837.7 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE FALSE TRUE 2384 FALSE NA FALSE NA TIAM1 ENSG00000156299.15 protein_coding - - chr21:31118416-31559977:- chr21:31164962:- chr21:32490734-32932290:- chr21:32537279:- ATP5PO ENSG00000241837.7 protein_coding - - chr21:33903453-33915814:- chr21:33904021:- chr21:35275757-35288118:- chr21:35276325:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none PDZ_domain(100%),PH_domain(47%),Raf-like_Ras-binding_domain(100%),T-lymphoma_invasion_and_metastasis_CC-Ex_domain(100%)|ATP_synthase_delta_(OSCP)_subunit(35%) PDZ(100%),PH(76%),PH_9(100%),RBD(100%),Tiam_CC_Ex(100%)|OSCP(5%) 22 22 37 130 3988 ENST00000286827.7 ENST00000290299.7 upstream downstream duplicates(21),low_entropy(1),mismatches(4),multimappers(1) TTGAGATCAATAATCGTGCTGCTGACGCCCTGAACTCTTCTATGCTCAAAGATTTCCTCTCACAGCCCTCGCTGGGCCTCCTGGTGAGGACCTACCCCGAGCTGGAGGAAGGAGTGGAGCTGCTGGAAAGCCCGCCCCACCGAGTGGACGGCCCTGCCGACCTTGGCGAGAGCCCCCTCGCCTTTCTCACCAGCAACCCAG___GGCACAGCCTTTGCAGCGAGCAGGGCAGCAGTGCTGAGACCGCTCCAGAGGAGACCGAGGGGCCAGACTTGGAATCCTCAGATGAGACTGATCACAGCAGCAAG|CCTTTAGAAGAAGCCACACTCTCTGAATTAAAAACTGTCCTCAAGAGCTTCCTAAGTCAAGGCCAAGTATTGAAATTGGAGGCTAAG___ACTGATCCGTCAATCTTGGGTGGAATGATTGTGCGCATTGGCGAGAAATATGTTGACATGTCTGTCAAGACCAAGATTCAGAAGCTGGGCAGGGCTATGCGGGAGATTGTCTAAAAGTGTTGGTTTTCTGCCATCAGTGAAAATTCTT EINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVELLESPPHRVDGPADLGESPLAFLTSNPGHSLCSEQGSSAETAPEETEGPDLESSDETDHSSK|PLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26037 ZMYND11::SLIT3 ENSG00000015171.21::ENSG00000184347.16 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4380 TRUE 1654 ZMYND11 ENSG00000015171.21 protein_coding + + chr10:130088-254637:+ chr10:180128:+ chr10:176028-300577:+ chr10:226068:+ SLIT3 ENSG00000184347.16 protein_coding - - chr5:168661740-169301139:- chr5:169276485:- chr5:168088745-168728143:- chr5:168703489:- chr10:186160,chr10:186161 chr5:169299802,chr5:169299801 NA NA chr10:232100,chr10:232101 chr5:168726806,chr5:168726805 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none |EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(98%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(65%) |EGF(100%),LRRCT(100%),LRRNT(59%),LRR_5(100%),LRR_8(96%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 13 17 45 65 56 ENST00000381604.9 unknown downstream downstream duplicates(28),mismatches(2) CGGCGGTGGAGGAGCCGGAGCATAATG___CTAAAGAAGTAAACAGGTCATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAGATTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAA|GGCATCCCGGCGACTCTTTGGACCAGTTGAACCAAAGAGGATAGAGGATGAAGTCCAAATTGGTAATGGACTCCAGGAATCTTTGTTAGCAGCTCTTGGAAGAAGATGGGAGGCCAACCACACTTTTCTCCGCTTATTGACGACACAGTTCAAATCATCAGGAAGAGACATTATGGGTCTACAGGTCTCCTGGGCTGTGAGCAGAGTCGCAGCTGGCATCTGGGAGAAAAAAGAAAGAAGACCACAATTTGGCCTTTAAGGAAATAGACCTGGGAGGAGATAAAAGGGAGTCATCTCACT MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITk|asrrlfgpvepkriedevqignglqesllaalgrrweanhtflrllttqfkssgrdimglqvswavsrvaagiwekkerrpqfgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-218-2,hsa-mir-585 chr5:168768146-168768255:-,chr5:169263601-169263694:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26038 ZMYND11::SLIT3 ENSG00000015171.21::ENSG00000184347.16 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE TRUE 2385 TRUE 4380 TRUE 1654 ZMYND11 ENSG00000015171.21 protein_coding + + chr10:130088-254637:+ chr10:180128:+ chr10:176028-300577:+ chr10:226068:+ SLIT3 ENSG00000184347.16 protein_coding - - chr5:168661740-169301139:- chr5:169251459:- chr5:168088745-168728143:- chr5:168678463:- chr10:186160,chr10:186161 chr5:169299802,chr5:169299801 NA NA chr10:232100,chr10:232101 chr5:168726806,chr5:168726805 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(98%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(65%) |EGF(100%),LRRCT(100%),LRRNT(59%),LRR_5(100%),LRR_8(93%),Laminin_G_1(100%),Laminin_G_2(100%),hEGF(100%) 5 10 11 65 14 ENST00000381604.9 ENST00000519560.6 downstream downstream duplicates(8),mismatches(2) CGGCACCGGAGGGGAGGGCCGGGCGCGGCGGCGGCGGCGGTGGAGGAGCCGGAGCATAATG___CTAAAGAAGTAAACAGGTCATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAGATTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAA|TGACCTGGACAGAAATAATATCACCAGGATCACCAAGATGGACTTCGCTGGGCTCAAGAACCTCCGAGTCTT___GCATCTGGAAGACAACCAGGTCAGCGTCATCGAGAGAGGCGCCTTCCAGGACCTGAAGCAGCTAGAGCGACT___GCGCCTGAACAAGAATAAGCTGCAAGTCCTTCCAGAATTGCTTTTCCAGAGCACGCCGAAGCTCACCAGACT___AGATTTGAGTGAAAACCAGATCCAGGGGATCCCGAG MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITn|DLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-218-2 chr5:168768146-168768255:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26039 SLIT3::ZMYND11 ENSG00000184347.16::ENSG00000015171.21 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLIT3 ENSG00000184347.16 protein_coding - - chr5:168661740-169301139:- chr5:169300513:- chr5:168088745-168728143:- chr5:168727517:- ZMYND11 ENSG00000015171.21 protein_coding + + chr10:130088-254637:+ chr10:209889:+ chr10:176028-300577:+ chr10:255829:+ chr5:169299809,chr5:169299812 chr10:186161,chr10:186158 NA NA chr5:168726813,chr5:168726816 chr10:232101,chr10:232098 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Leucine_rich_repeat(1%),Leucine_rich_repeat_N-terminal_domain(34%)|Bromodomain(100%),PWWP_domain(100%) LRRNT(40%),LRR_8(0%)|Bromodomain(100%),PWWP(100%) 0 3 1 1 10 ENST00000519560.6 ENST00000381591.5 upstream upstream duplicates(2) GCCGTCGCCTGCCCCACCAAGTGTACCTGCTCCGCTGCCAGCGTGGACTGCCACGGGCTGGGCCTCCGCGCGGTTCCTCGGGGCATCCCCCGCAACGCTGAGCGCCT|GTATATGTCTCGAGTCCACGGTATGCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACAGTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATT___GACTGGGAAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCTGTGTTTTCG AVACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERl|YMSRVHGMHPKETTRQLSLAVKDGLIVETLTVGCKGSKAGIEQEGYWLPGDEIDWETENHDWYCFECHLPGEVLICDLCF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26040 CASC15::PPARG ENSG00000272168.10::ENSG00000132170.24 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE TRUE 2386 TRUE 4381 TRUE 1655 CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21909603:+ chr6:21664415-22654684:+ chr6:21909834:+ PPARG ENSG00000132170.24 protein_coding + + chr3:12287368-12434356:+ chr3:12379704:+ chr3:12328867-12475855:+ chr3:12421203:+ chr6:21957291,chr6:21957289 chr3:12338239,chr3:12338234 NA NA chr6:21957522,chr6:21957520 chr3:12379738,chr3:12379733 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%) |Hormone_recep(100%),PPARgamma_N(100%),zf-C4(100%) 11 25 30 210 1123 ENST00000685576.1 ENST00000287820.10 downstream upstream duplicates(33),mismatches(2),multimappers(4) CCAG___...GAATTGGCAACAAGCTCATTTCACTGGTGGGTTTGCTGAAGCATTATCACAAGACAGTCAGAATGACTGATGAGTGCTCTTCAG___GTGTGAATCATGGCAATACAGTGAAAGACAGTGATTTACTGCTTTTGAGGGCGTGCATGTATATGATTAACGGATGGAAGTGCAGGACTCCAAGATTTACTTCCTTCCCTTTCCAGCAGAATTACCTGAGACGA|AAATGACCATGGTTGACACAGAGATGCCATTCTGGCCCACCAACTTTGGGATCAGCTCCGTGGATCTCTCCGTAATGGAAGACCACTCCCACTCCTTTGATATCAAGCCCTTCACTACTGTTGACTTCTCCAGCATTTCTACTCCACATTACGAAGACATTCCATTCACAAGAACAGATCCAGTGGTTGCAGATTACAAGTATGACCTGAAACTTCAAGAGTACCAAA___GTGCAATCAAAGTGGAGCCTGCATCTCCACCTTATTATTCTGAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE peroxisome proliferative activated receptor, gamma 1 Yes follicular thyroid epithelial TSG, fusion translocation 26041 CASC15::PPARG ENSG00000272168.10::ENSG00000132170.24 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4381 TRUE 1655 CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21909603:+ chr6:21664415-22654684:+ chr6:21909834:+ PPARG ENSG00000132170.24 protein_coding + + chr3:12287368-12434356:+ chr3:12344807:+ chr3:12328867-12475855:+ chr3:12386306:+ chr6:21957291,chr6:21957289 chr3:12338239,chr3:12338234 NA NA chr6:21957522,chr6:21957520 chr3:12379738,chr3:12379733 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation medium none |Ligand-binding_domain_of_nuclear_hormone_receptor(100%),PPAR_gamma_N-terminal_region(100%),Zinc_finger__C4_type_(two_domains)(100%) |Hormone_recep(100%),PPARgamma_N(100%),zf-C4(100%) 0 1 30 210 14 ENST00000685576.1 ENST00000643888.2 downstream upstream duplicates(15),mismatches(1),multimappers(4) CCAG___...CAG___GTGTGAATCATGGCAATACAGTGAAAGACAGTGATTTACTGCTTTTGAGGGCGTGCATGTATATGATTAACGGATGGAAGTGCAGGACTCCAAGATTTACTTCCTTCCCTTTCCAGCAGAATTACCTGAGACGA|ACGCTGATTTATTTAAATCATCTCTAATTCTCACAACTCCGAAAAGATAAGAAAACAGAGATGTGACAAGGCTTGAATGCAAACCCAG___AAATGACCATGGTTGACACAGAGATGCCATTCTGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE peroxisome proliferative activated receptor, gamma 1 Yes follicular thyroid epithelial TSG, fusion translocation 26044 PUM2::LDAH ENSG00000055917.17::ENSG00000118961.15 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4383 TRUE 1656 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20263193:- chr2:20448452-20551995:- chr2:20462954:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20801465:- chr2:20883774-21022890:- chr2:21001225:- chr2:20260411,chr2:20260413 chr2:20803032,chr2:20803031 NA NA chr2:20460172,chr2:20460174 chr2:21002792,chr2:21002791 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Pumilio-family_RNA_binding_repeat(4%)|Lipid-droplet_associated_hydrolase(100%) PUF(0%)|LIDHydrolase(100%) 6 1 9 455 118 ENST00000704930.1 ENST00000237822.8 upstream downstream duplicates(2),mismappers(1),mismatches(1) TGACAAATGGTAGTGGTCGATATATCTCTGCAGCACCTGGAGCAGAAGCAAAATATCGAAGTGCTTCAAGCACTTCCAGTCTATTTAGCTCCAGCAGCCAGCTCTTTCCTCCTTCCCGGCTTCGGTATAATAGGTCTGATATTATGCCTTCTGGCCGCAGTAGATTATTGGAAGATTTCAGAAACAACCGCTTCCCAAACCTTCAGCTTAGAGACTTGATTGGACATATAGTTGAGTTTTCTCAAGACCAGCATGGTTCTAG|AAATGGACTCAGAACTCAAGGAAGAAATTCCTGTGCATGAGGAATTCATTTTGTGTGGTGGAGCCGAAACCCAGGTTCTAAAATGTGGGCCCTGGACAGACCTCTTTCATGATCAAAGTGTCAAAAGGCCTAAGCTGCTTATTTTCATTATTCCTG___GTAACCCAGGTTTTTCTGCCTTTTATGTGCCATTTGCA...CAAAGGACATGAAACTTGTGCTCATTGGCCATTCAATAGGCAGCTATTTCACACTTCAGATGCTGAAGCGAGTCCCTGAGCTCCCG___GTAATTCGTGCCTTT TNGSGRYISAAPGAEAKYRSASSTSSLFSSSSQLFPPSRLRYNRSDIMPSGRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSr|nglrtqgrnsca* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26045 PUM2::LDAH ENSG00000055917.17::ENSG00000118961.15 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4383 TRUE 1656 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20278583:- chr2:20448452-20551995:- chr2:20478344:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20801465:- chr2:20883774-21022890:- chr2:21001225:- chr2:20260411,chr2:20260413 chr2:20803032,chr2:20803031 NA NA chr2:20460172,chr2:20460174 chr2:21002792,chr2:21002791 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site duplication high none |Lipid-droplet_associated_hydrolase(100%) |LIDHydrolase(100%) 1 2 3 306 118 ENST00000704930.1 ENST00000440866.6 upstream downstream duplicates(1) CAATAGTCTGGGATTTTCCTCCTCTCCAAGTCCAATAGGCATGCCTCTGCCAAGCCAAACTCCAGGACATTCACTTACGCCACCGCCATCACTTTCATCACATGGATCCTCATCCAGTTTGCATTTAG|AAATGGACTCAGAACTCAAGGAAGAAATTCCTGTGCATGAGGAATTCATTTTGTGTGGTGGAGCCGAAACCCAGGTTCTAAAATGTGGGCCCTGGACAGACCTCTTTCATGATCAAAGTGTCAAAAGGCCTAAGCTGCTTATTTTCATTATTCCTG___GTAACCCAGGTTTTTCTGCCTTTTATGTGCCATTTGCAAAGGCTTTATACTCTTTG NSLGFSSSPSPIGMPLPSQTPGHSLTPPPSLSSHGSSSSLHL|eMDSELKEEIPVHEEFILCGGAETQVLKCGPWTDLFHDQSVKRPKLLIFIIPGNPGFSAFYVPFAKALYS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26046 PUM2::LDAH ENSG00000055917.17::ENSG00000118961.15 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4383 TRUE 1656 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20278583:- chr2:20448452-20551995:- chr2:20478344:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20774979:- chr2:20883774-21022890:- chr2:20974739:- chr2:20260411,chr2:20260413 chr2:20803032,chr2:20803031 NA NA chr2:20460172,chr2:20460174 chr2:21002792,chr2:21002791 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |Lipid-droplet_associated_hydrolase(78%) |LIDHydrolase(76%) 0 1 2 306 174 ENST00000704930.1 ENST00000440866.6 upstream downstream none CCGCCATCACTTTCATCACATGGATCCTCATCCAGTTTGCATTTAG|ATTCAAACGCTCAAGAAATTAAGGACATTTATGGACTAAATGGACAAATAGAGCACAAACTAGCTTTCCTGAGAACTCATGTGCCAAAGGACATGAAACTTGTGCTCATTGGCCATTCAATAGGCAGCTATTTCACACTTCAGATGCTGAAGCGAGTCCCTG PPSLSSHGSSSSLHL|dSNAQEIKDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRVP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26048 SRGAP3::TPRXL ENSG00000196220.17::ENSG00000180438.15 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SRGAP3 ENSG00000196220.17 protein_coding - - chr3:8980591-9363053:- chr3:9104680:- chr3:9022275-9404737:- chr3:9146364:- TPRXL ENSG00000180438.15 transcribed_processed_pseudogene + - chr3:13937273-14082811:+ chr3:13977016:- chr3:13978773-14124311:+ chr3:14018516:- chr3:9099507,chr3:9099509,chr3:9099511 chr3:14005720,chr3:14005721,chr3:14005721 NA NA chr3:9141191,chr3:9141193,chr3:9141195 chr3:14047220,chr3:14047221,chr3:14047221 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)| FCH(100%)| 1 2 6 72 11 ENST00000383836.8 unknown upstream downstream duplicates(1) CGCACGCAGCTGGTGGAGCAGTTCAAATGTCTGGAGCAGCAATCAGAGTCGCGACTGCAGCTGCTTCAAGACCTCCAGGAGgTTTTCCGCCGGAAAGCTGAGATTGAGCTCGAGTACTCCCGCAGCCTGGAGAAGCTGGCTGAGCGCTTCTCCTCCAAAATCCGCAGCTCCCGGGAGCACCAGTTCAA___GAAGGACCAGTACCTCCTCTCGCCTGTGAACTGTTGGTATCTGGTTCTGCATCAGACCCGGCGGGAGAGCCGAGACCATGCCACCCTCAATGACATCTTCATGAACAATGTCATCGTCCGCCTCTCCCAGATCAGTGAGGATGTCATCAGACTCTTCAAAAAG|AACAAGTTTGCCCTCTCCCTTGTTTTCCAGATACTCCGGTATCTGGAGCATCCTCAGAAAATATACTGGAATGGTAAATGAGCAGCTTTATCACATGGCATTAAGCAGATATGTTTAATTCCATATTCTTTAGAAAGGAATCTAGAAGTTTGCAAAAAAGTGATGCACAACATAATCCAGAATGCAGAATAATGCCTAACAATGTTGATGGAAATCTATGAGAATTGTTAACTTGTGAAAAGTCTTTGATTAGGTTTTTTCTGGTAG RTQLVEQFKCLEQQSESRLQLLQDLQEvFRRKAEIELEYSRSLEKLAERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFKK|nkfalslvfqilrylehpqkiywngk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SLIT-ROBO Rho GTPase activating protein 3 2 pilocytic astrocytoma other fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26050 DOP1B::VPS26C ENSG00000142197.13::ENSG00000157538.14 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DOP1B ENSG00000142197.13 protein_coding + + chr21:36156782-36294274:+ chr21:36200501:+ chr21:37529080-37666572:+ chr21:37572799:+ VPS26C ENSG00000157538.14 protein_coding - + chr21:37223420-37267919:- chr21:37243184:+ chr21:38595721-38640220:- chr21:38615485:+ chr21:36202432,chr21:36202432,chr21:36202424,chr21:36202433 chr21:37242380,chr21:37242385,chr21:37242380,chr21:37242378 NA NA chr21:37574730,chr21:37574730,chr21:37574722,chr21:37574731 chr21:38614681,chr21:38614686,chr21:38614681,chr21:38614679 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Dopey__N-terminal(52%)| Dopey_N(71%)| 1 0 5 59 2 ENST00000691173.1 unknown downstream upstream duplicates(4),mismatches(1) CAAGGACTTGTTTCTGTACAG___CTGCGGGTTATTTCCTCTCCTGGCACACGCGGCGGTGTCGGTGAGGCCGGTGCTGCTCACCCTGTACGAGAAGTACTTCCTCCCACTGCAGAAGCTGCTCCTGCCCAGTCTGCAGGC...TTCATCGTGGGCCTGCTGCCCGGCCTTGAAGAGGGCTCCGAGATCTCCGACAG|ATTTTCGTCTAGACTTTCATCAGGAAGACATtAGATTTATGGCTCCAGATAGTACTAATACCTCGTCCAACATCACAAGCAGAGGCCTTCAACTGGGGGCCGTGACTACAAAGAGGGACCGTTCACAGACTGGCAACGAACCCAGAACGTATACACCGAAATCGTGTGCAG FIVGLLPGLEEGSEISDr|fssrlssgrh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26051 USP15::ENSG00000258077 ENSG00000135655.16::ENSG00000258077.2 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62355475:+ chr12:62654119-62811211:+ chr12:62749256:+ ENSG00000258077 ENSG00000258077.2 lncRNA - - chr12:75563202-75984015:- chr12:75663806:- chr12:75956982-76377795:- chr12:76057586:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion high none DUSP_domain(100%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(2%)| DUSP(100%),UCH(0%),Ubiquitin_2(100%),Ubiquitin_3(100%)| 1 1 4 194 4 ENST00000353364.7 unknown downstream downstream none TGGCCAAGGGGaCCTTCTACTCCTAA___TGTGAAAAACTCAAATTACTGTCTTCCATCATATACCGCTTATAAGAACTATGATTATTCGGAACCTGGAAGAAACAATGAACAGCCAGGCCTCTGTGGCCTAAGTAACTTGGGAAATACGTGTTTCATGAACTCAGCTATTCAG|GATGAAGATAGCCCGAAAACTTGCCTGGAAGTTTAACAACAACAGAGGAGAGCTCCTTTATCATCAAAAGCCAAGAAAGCAATGCAGGTGATGACTTAATGTCATCTTACATAAAATATAAAGAGACTTTCTAGGA WPRGPSTPNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQ|dedspktclev* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26053 PSMD8::SIPA1L3 ENSG00000099341.13::ENSG00000105738.11 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PSMD8 ENSG00000099341.13 protein_coding + + chr19:38374563-38383850:+ chr19:38380999:+ chr19:38865203-38874490:+ chr19:38871639:+ SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:38182519:+ chr19:38397848-38699009:+ chr19:38673159:+ chr19:38381638,chr19:38381637 chr19:38182257,chr19:38182253 NA NA chr19:38872278,chr19:38872277 chr19:38672897,chr19:38672893 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none CSN8/PSMD8/EIF3K_family(56%)|C-terminal_domain_of_SPAR_protein(100%) CSN8_PSD8_EIF3K(42%)|SPAR_C(100%) 3 5 20 3302 314 ENST00000215071.9 ENST00000222345.11 downstream upstream duplicates(2),mismatches(2) CCAAACAGCAGCTAATTCTGGCCC___GTGACATACTGGAGATCGGGGCCCAATGGAGCATCCTACGCAAGGACATCCCCTCCTTCGAGCGCTACATGGCCCAGC...CAGAACCGGGTGGCTGAGTTCCACACGGAGTTGGAGCGGCTGCCTGCCAAGGACATACAGACCAATGTCTACATCAAGCACCCAGTGTCCCTGGAGCAA___TACCTGATGGAGGGCAGCTACAACAAAGTGTTCCTGGCCAAGGGTAACATCCCCGCCGAGAGCTACACCTTCTTCATTGACATCCTGCTCGACACTATCAG|TGACATGGGCTCGAGGGTTGGCTACCCCGCTCAGGTTTACAAAACTGCCAGTGCAGAGACTCCTCGGCCCTCCCAGCTGGCCCAGCCCAGCCCCTTTCAGCTCTCCGCCTCCGTCCCCAAGTCCTTCTTCTCCAAGCAGCCTGTACGCAATAAGCACCCAACAGGGTGGAAGAGAACGGAGGAGCCCCCACCACGGCCACTCCCCTTCAGTGACCCAAAGAA___GCAGGTGGACACGAACACCAAAAATGTCTTTGGGCAACCGAGGTTGAGGGCATCCCTCCGAGACCTCCGGTCACCACGGAAG QNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIs|DMGSRVGYPAQVYKTASAETPRPSQLAQPSPFQLSASVPKSFFSKQPVRNKHPTGWKRTEEPPPRPLPFSDPKKQVDTNTKNVFGQPRLRASLRDLRSPR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26056 CASC15::CDKAL1 ENSG00000272168.10::ENSG00000145996.11 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE TRUE 2390 TRUE 4384 TRUE 1657 CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21909603:+ chr6:21664415-22654684:+ chr6:21909834:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20739519:+ chr6:20534688-21232635:+ chr6:20739750:+ chr6:21937122 chr6:20732219 NA NA chr6:21937353 chr6:20732450 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Radical_SAM_superfamily(100%),TRAM_domain(100%),Uncharacterized_protein_family_UPF0004(26%) |Radical_SAM(100%),TRAM(100%),UPF0004(0%) 2 0 4 210 1368 ENST00000685576.1 ENST00000274695.8 downstream upstream none CAG___TACCCTCAGGTGACTACAGATGTGTTAACACCCAGCATGTTCCGGTAGGAGACTTTCTGGATGGGGAAGATTTCCAG___...GACTGATGAGTGCTCTTCAG___GTGTGAATCATGGCAATACAGTGAAAGACAGTGATTTACTGCTTTTGAGGGCGTGCATGTATATGATTAACGGATGGAAGTGCAGGACTCCAAGATTTACTTCCTTCCCTTTCCAGCAGAATTACCTGAGACGA|AAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGG___GTTCAGCAGATAGATCGTGTGGTAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26057 CASC15::CDKAL1 ENSG00000272168.10::ENSG00000145996.11 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4384 TRUE 1657 CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21668899:+ chr6:21664415-22654684:+ chr6:21669130:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20955419:+ chr6:20534688-21232635:+ chr6:20955650:+ chr6:21701109,chr6:21934538,chr6:21937122,chr6:21774192,chr6:21752531 chr6:20936255,chr6:20921129,chr6:20732219,chr6:20558375,chr6:20769515 NA NA chr6:21701340,chr6:21934769,chr6:21937353,chr6:21774423,chr6:21752762 chr6:20936486,chr6:20921360,chr6:20732450,chr6:20558606,chr6:20769746 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Radical_SAM_superfamily(77%),TRAM_domain(100%) |Radical_SAM(38%),TRAM(100%) 1 0 0 949 1589 ENST00000688254.1 ENST00000274695.8 downstream upstream duplicates(1) CTTAAAAGTGCGACGAAGTGGGGAAGAAG___GTGTAATTACTATTATCAGCATCTAGAAAGCATCATGAATTTGCTGGAGTACTTCCTAGCACTGACCTCCTT...ATTACAATTTGATCGCTGGGAATTCTCCACCTTAAAGAAG|AGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26058 CASC15::CDKAL1 ENSG00000272168.10::ENSG00000145996.11 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA TRUE 4384 TRUE 1657 CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21681015:+ chr6:21664415-22654684:+ chr6:21681246:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:21108401:+ chr6:20534688-21232635:+ chr6:21108632:+ chr6:21752531,chr6:21701109,chr6:21934538,chr6:21937122,chr6:21774192 chr6:20769515,chr6:20936255,chr6:20921129,chr6:20732219,chr6:20558375 NA NA chr6:21752762,chr6:21701340,chr6:21934769,chr6:21937353,chr6:21774423 chr6:20769746,chr6:20936486,chr6:20921360,chr6:20732450,chr6:20558606 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |TRAM_domain(100%) |TRAM(100%) 1 0 0 100 1062 ENST00000688254.1 ENST00000274695.8 downstream upstream duplicates(1) GTGGGGAAGAAG___GTGTAATTACTATTATCAGCATCTAGAAAGCATCATGAATTTGCTGGAGTACTTCCTAGCACTGACCTCCTTCATTCTGCGTTGTTCTT...TCAAGCAATAGCAGTCTGCCTGCTGCAGCTCTCCAAGTGCTGGGATTACAG|AAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26061 EMC3::ENSG00000233358 ENSG00000125037.13::ENSG00000233358.2 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EMC3 ENSG00000125037.13 protein_coding - - chr3:9962682-10011202:- chr3:9986507:- chr3:10004366-10052886:- chr3:10028191:- ENSG00000233358 ENSG00000233358.2 lncRNA - - chr6:22744395-23031780:- chr6:22822240:- chr6:22744624-23032009:- chr6:22822469:- chr3:9982356,chr3:9982358,chr3:9982360 chr6:22824148,chr6:22824149,chr6:22824149 NA NA chr3:10024040,chr3:10024042,chr3:10024044 chr6:22824377,chr6:22824378,chr6:22824378 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none Integral_membrane_protein_EMC3/TMCO1-like(25%)| EMC3_TMCO1(0%)| 1 0 3 5006 10 ENST00000470827.3 unknown upstream downstream duplicates(2),mismatches(2) CAGTAAGCTCGGCTCACAGTCGCAGGAGAGTTCTGtGGTACACGGGCAAAGGGGCTTGAGAAGGCCCGGAGGCGAAGCCGAAGAGAAGCAACTGTGCCCCGGAGAAGAGAAGCTCGCCCATTCCAGACTGGGAACCAGCTTTCAGTGAAGATGGCAGGGCCAGAACTGTTGCTCGACTCCAACATCCGCCTCTGGGTGGTCCTACCCATCGTTATCATCACTTTCTTCGTAGGCATGATCCGCCACTACGTGTCCATCCTGCTGCAGAGCGACAAGAAGCTCACCCAGGAACAAGTATCTGACAG|AATTTGACCCACGTGCTAGACTGAACAAACCACAAGCCCATAATCTTCCCCTGGGCCTTGTTGTGGACAGTGAGGGCCTGTAGGAATTGGGATATGAGTTCATCTGTCAACTTACAGCTAAAGAATTTAAAGCAAGAACAAGGAGTTTTGGTTCCACAAGATGCTCTGTTTAAAAGGACATTGTTGAGAGGCTTACTGTTCAGCAaTACTaGGACAGTCTTGAAAAAAcGtCCTACTTTCCCTCAGCAAAGCCAACTCTGAAAGAGGATGATGTCTACAAATGAGGTCTCA MAGPELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDr|i* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26086 CASC15::E2F3 ENSG00000272168.10::ENSG00000112242.16 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21664313:+ chr6:21664415-22654684:+ chr6:21664544:+ E2F3 ENSG00000112242.16 protein_coding + + chr6:20401879-20493714:+ chr6:20479846:+ chr6:20402110-20493945:+ chr6:20480077:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |E2F/DP_family_winged-helix_DNA-binding_domain(100%),E2F_transcription_factor_CC-MB_domain(100%) |E2F_CC-MB(100%),E2F_TDP(100%) 0 1 0 107 1637 ENST00000685576.1 ENST00000535432.2 downstream upstream none AAGAGACCCAGGGCTCCGCAAGGAGACGGCGCAGGTGTCGGGGCTCCCCGCAG|GCAAAGCGAAGGCTGGAGCTAGGAGAAAGCGGTCATCAGTACCTCTCA...GAcCTGCACTACGAAGTCCAaATAGTCCAAAAA___AAAAAACGCGGTATGATACGTCTCTTGGTCTGCTCACCAAGAAGTTCATTCAGCTCCTGAGCCAGTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26087 EIF3E::LINC00992 ENSG00000104408.11::ENSG00000248663.7 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EIF3E ENSG00000104408.11 protein_coding - - chr8:108162787-108443496:- chr8:108214607:- chr8:109175016-109455725:- chr8:109226836:- LINC00992 ENSG00000248663.7 lncRNA + + chr5:117415509-117546298:+ chr5:117505635:+ chr5:116751205-116881993:+ chr5:116841330:+ chr8:108208695,chr8:108208700 chr5:117504976,chr5:117504971 NA NA chr8:109220924,chr8:109220929 chr5:116840671,chr5:116840666 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none PCI_domain(61%),eIF3_subunit_6_N_terminal_domain(100%)| PCI(14%),eIF3_N(100%)| 297 226 299 6532 946 ENST00000677409.1 unknown upstream upstream duplicates(181),mismappers(4),mismatches(47) CTAAAAGATCTAGTTAAAGTTATTCAACAG___GAGTCTTACACATATAAAGACCCAATTACAGAATTTGTTGAATGTTTATATGTTAACTTTGACTTTGATGGGGCTCAGAAAAAGCTGAGGGAATGTGAATCA___GTGCTTGTGAATGACTTCTTCTTGGTGGCTTGTCTTGAGGATTTCATTGAAAATGCCCGTCTCTTCATATTTGAGACTTTCTGTCGCATCCACCAGTGTATCAGCATTAA|GTTCACTGGTCCACTTGTGAATTCCTTAAGAGAGCCAAGGATTTGAAACTCAGTTGGCATGAGTGAAAAG___GAAGAAGTTCACAGACAGGATGGCATCATGATAAGTAAACTCCAGTGGTGTGTTAAAGATGGCTTGTACGGGCTTGTGAGAATTACCAGCTAATCTTCTGGAGTTTTGTAAGC LKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISIk|ftgplvnslrepri* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE eukaryotic translation initiation factor 3, subunit E 1 Yes colorectal epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26088 ILRUN::SPDEF ENSG00000196821.10::ENSG00000124664.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4387 TRUE 1658 ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34646601:- chr6:34555065-34664636:- chr6:34614378:- SPDEF ENSG00000124664.11 protein_coding - - chr6:34537802-34556333:- chr6:34544484:- chr6:34505579-34524110:- chr6:34512261:- chr6:34644912,chr6:34644919,chr6:34644923 chr6:34555619,chr6:34555623,chr6:34555623 NA NA chr6:34612689,chr6:34612696,chr6:34612700 chr6:34523396,chr6:34523400,chr6:34523400 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none Ig-like_domain_from_next_to_BRCA1_gene(91%),UBA-like_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%) N_BRCA1_IG(16%),UBA_4(100%)|Ets(100%),SAM_PNT(100%) 104 78 167 1084 522 ENST00000374023.8 ENST00000544425.2 upstream downstream duplicates(77),low_entropy(9),mismappers(7),mismatches(65) TAAAAACATGGCGGATCCAGAATTCTG___GGGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATATGTCGGGGGAGACCAATTTGGACATGTGAACATGGTGATGGTGAGATCGCTAGAGCCCCAAGAGATTGCAGATGTCAGCGTCCAGATGTGCAGCCCCAGCAGAGCAGGAATGTATCAGGGACAGTGGCGGATGTGCACTGCTACAGGACTCTACTATGGAG|ACACAGCCGCCAGCCCAAACAGCAGCGGCATGGGCAGCGCCAGCCCGGGTCTGAGCAGCGTATCCCCCAGCCACCTCCTGCTGCCCCCCGACACGGTGTCGCGGACAGGCTTGGAGAAGGCGGCAGCGGGGGCAGTGGGTCTCGAGAGACGGGACTGGAGTCCCAG?CC?CCCGCCACGCCCGAGCAGGGCCTGTCCGCCTTCTACCTCTCCTACTTTGACATGCTGTACCCTGAGGACAGCAGCTGGGCAGCCAAGGCCCCTGGGGCCAGCAGTCGGGAGGAGCCACCTGAGG KTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYG|dtaaspnssgMGSASPGLSSVSPSHLLLPPDTVSRTGLEKAAAGAVGLERRDWSP?PPATPEQGLSAFYLSYFDMLYPEDSSWAAKAPGASSREEPPE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26089 ILRUN::SPDEF ENSG00000196821.10::ENSG00000124664.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4387 TRUE 1658 ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34646601:- chr6:34555065-34664636:- chr6:34614378:- SPDEF ENSG00000124664.11 protein_coding - - chr6:34537802-34556333:- chr6:34541181:- chr6:34505579-34524110:- chr6:34508958:- chr6:34644912,chr6:34644919,chr6:34644923 chr6:34555619,chr6:34555623,chr6:34555623 NA NA chr6:34612689,chr6:34612696,chr6:34612700 chr6:34523396,chr6:34523400,chr6:34523400 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Ig-like_domain_from_next_to_BRCA1_gene(91%),UBA-like_domain(100%)|Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(82%) N_BRCA1_IG(16%),UBA_4(100%)|Ets(100%),SAM_PNT(38%) 1 0 2 1084 646 ENST00000374023.8 ENST00000374037.8 upstream downstream low_entropy(1) CTG___GGGCAGAGGCCTGGCCTCCAGGGGTTTGTCTTAAATATGTCGGGGGAGACCAATTTGGACATGTGAACATGGTGATGGTGAGATCGCTAGAGCCCCAAGAGATTGCAGATGTCAGCGTCCAGATGTGCAGCCCCAGCAGAGCAGGAATGT...ACTCTACTATGGAG|ATCCCATGGACTGGAGCCCCAGCAATGTGCAGAAGTGGCTCCTGTGGACAGAGCACCAATACCGGCTGCCCCCCATGGGCAAGGCCTTCCAGGAGCTGGCGGGCAAGGAGCTGTGCGCCATGTCGGAGGAGCAGTTCCGCCAGCGCTCGCCCCTGGGTGGGGATGTGCTGCACGCCCACCTGGACATCTGGAAGTCAG___CGGCCTGGATGAAAG LYYG|dPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRSPLGGDVLHAHLDIWKSAAWMK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26091 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2392 TRUE 4388 TRUE 1659 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59683756:+ chr17:57697045-57774317:+ chr17:57761117:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59683891 chr17:59827926 NA NA chr17:57761252 chr17:57905287 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(87%)| Clathrin(89%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 73 89 120 1729 1617 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(73),mismappers(28),mismatches(19) AGAACTGGTGTTTTTGTATGACAAGTATGAAGAATATGATAATGCCATAATTACCATGATGAATCATCCAACTGATGCCTGGAAAGAAGGGCAATTCAAAGATATCATTACCAAG___GTTGCCAATGTGGAACTATACTACAGAGCAATACAGTTCTACTTAGAATTCAAGCCTCTGTTGTTAAATGATTTGCTGATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAAC ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26092 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4388 TRUE 1659 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59683756:+ chr17:57697045-57774317:+ chr17:57761117:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59834012:+ chr17:57784553-57919616:+ chr17:57911373:+ chr17:59683891 chr17:59827926 NA NA chr17:57761252 chr17:57905287 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(87%)| Clathrin(89%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 3 3 123 1729 17 ENST00000269122.8 ENST00000591877.2 downstream upstream duplicates(28),mismatches(15) TAATGCCATAATTACCATGATGAATCATCCAACTGATGCCTGGAAAGAAGGGCAATTCAAAGATATCATTACCAAG___GTTGCCAATGTGGAACTATACTACAGAGCAATACAGTTCTACTTAGAATTCAAGCCTCTGTTGTTAAATGATTTGCTGATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAG|GCTGGAGGACAATGGCGCACTGCAACCTCCACCTCCCAG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAcAaTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGA NAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK|aggqwrtatstsqccprhrsisaeaisgvpggstaeaspqkrnghttgrtmvvldv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26093 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4388 TRUE 1659 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59683756:+ chr17:57697045-57774317:+ chr17:57761117:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59683891 chr17:59827926 NA NA chr17:57761252 chr17:57905287 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(87%)| Clathrin(89%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 1 0 40 1729 1904 ENST00000269122.8 ENST00000262291.9 downstream upstream duplicates(9),mismatches(8) AATTACCATGATGAATCATCCAACTGATGCCTGGAAAGAAGGGCAATTCAAAGATATCATTACCAAG___GTTGCCAATGTGGAACTATACTACAGAGCAATACAGTTCTACTTAGAATTCAAGCCTCTGTTGTTAAATGATTTGCTGATGGTGCTGTCTCCACGGTTGGATCACACTCGTGCAGTCAATTATTTCAGCAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTCCTGAAA ITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK|GENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26095 GALNT7::ORC4 ENSG00000109586.12::ENSG00000115947.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2394 FALSE NA FALSE NA GALNT7 ENSG00000109586.12 protein_coding + + chr4:173168811-173323967:+ chr4:173304118:+ chr4:174089962-174245118:+ chr4:174225269:+ ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:147958866:- chr2:148687965-148779173:- chr2:148716435:- chr4:173308217,chr4:173308222,chr4:173308233,chr4:173308240,chr4:173308243 chr2:147963149,chr2:147963149,chr2:147963149,chr2:147963149,chr2:147963149 NA NA chr4:174229368,chr4:174229373,chr4:174229384,chr4:174229391,chr4:174229394 chr2:148720718,chr2:148720718,chr2:148720718,chr2:148720718,chr2:148720718 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Glycosyl_transferase_family_2(100%)|AAA_ATPase_domain(78%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),Origin_recognition_complex_(ORC)_subunit_4_C-terminus(100%) Glycos_transf_2(100%)|AAA(43%),AAA_16(30%),AAA_22(31%),ORC4_C(100%) 34 50 88 392 473 ENST00000265000.9 ENST00000264169.6 downstream downstream duplicates(36),low_entropy(4),mismatches(2),multimappers(1) CCAGGTCTCCAGATTTGGGGTGGTGAAAACTTTGAGATCTCATACAAG___ATATGGCAGTGTGGTGGCAAATTATTATTTGTTCCTTGTTCTCGTGTTGGACATATCTACCGTCTTGAGGGCTGGCAAGGAAATCCTCCGCCCATTTATGTTGGGTCTTCTCCAACTCTGAAG|TTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATG___GACTGCTGCAGATCAATGACAAAATCGCCCTAAAGGAAATCACAAGGCAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTT___GGAAGCTTTGCTGAAAACCTTTCATTTCTTC PGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQGNPPPIYVGSSPTLK|LINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548t chr4:173268160-173268233:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26096 NSD1::CCDC26 ENSG00000165671.22::ENSG00000229140.12 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NSD1 ENSG00000165671.22 protein_coding + + chr5:177131830-177300213:+ chr5:177212195:+ chr5:176558831-176727214:+ chr5:176639196:+ CCDC26 ENSG00000229140.12 lncRNA - + chr8:128634199-129683770:- chr8:129338443:+ chr8:129646445-130696016:- chr8:130350689:+ NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none PWWP_domain(50%)| PWWP(70%)| 86 19 41 515 99 ENST00000508896.7 unknown downstream upstream duplicates(28),mismatches(10) CAGCGTTTAAACCAAAGGCGCACTAAACCTCGTAAGCGCATGAACAGATTTAAAGAGAAAGAAAACTCTGAGTGTGCCTTTAGGGTCTTACTTCCTAGTGACCCTGTGCAGGAGGGGCGGGATGAGTTTCCAGAGCATAGAACTCCTTCAGCAAGCATACTTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACATGGAAAAGGAGCCAGGAATTCCCAGTTTGACACCACAGGCTGAGCTCCCTGAACCAG|ATGAAAGCACCAAGTATCTACACAAGGGGAGAGACCTCACTGAACCAGGAAAAGAATTAAGAGTACCTTACTATCATTGCTTCATTCATTCAACAAACATATATTGAGTTTGTTCATTCTGGGTGATAGACTCTCAATGGAAAAAAAAAGTCATCTGTAATAATTTTTAAATAGATAGCCTATATTTACCTCTAATGATATTTTCATTTATTTGTCTTCCTAAACTTAAC QRLNQRRTKPRKRMNRFKEKENSECAFRVLLPSDPVQEGRDEFPEHRTPSASILEEPLTEQNHADCLDSAGPRLNVCDKSSASIGDMEKEPGIPSLTPQAELPEP|destkylhkgrdltepgkelrvpyyhcfihstniy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor binding SET domain protein 1 1 AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26097 STRADB::NOP58 ENSG00000082146.13::ENSG00000055044.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2395 FALSE NA FALSE NA STRADB ENSG00000082146.13 protein_coding + + chr2:201387858-201480846:+ chr2:201473076:+ chr2:202252581-202345569:+ chr2:202337799:+ NOP58 ENSG00000055044.11 protein_coding + + chr2:202265736-202303661:+ chr2:202297379:+ chr2:203130459-203168384:+ chr2:203162102:+ chr2:201474662,chr2:201474658 chr2:202297149,chr2:202297142 NA NA chr2:202339385,chr2:202339381 chr2:203161872,chr2:203161865 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Protein_kinase_domain(15%)|snoRNA_binding_domain__fibrillarin(17%) HAP1_N(100%),Milton(100%),PK_Tyr_Ser-Thr(36%),Pkinase(32%)|Nop(1%) 23 33 64 171 646 ENST00000194530.8 ENST00000264279.10 downstream upstream duplicates(29),mismatches(16),multimappers(5) GTTGATGAGCCAACCCTTTCCTGGTCACGTCCATCCACTAGAGCCAGTGAAGTACTATGTTCCACCAACGTTTCTCACTATGAGCTCCAAGTAGAAATAG___GAAGAGGATTTGACAACTTGACTTCTGTCCATCTTGCACGGCATACTCCCACgGGAACACTGGTAACTATAAAAATTACAAATCTGGAAAACTGCAATGAAGAACGCCTGAAAGCTTTACAG|ATTTCTCGAATGCTGGCAGCCAAAACCGTTTTGGCTATCCGTTATGATGCTTTTGGTGAGGATTCAAGTTCTGCAATGGGAGTTGAGAACAGAGCCAAATTAGAGGCCAGGTTGAGAACTTTGGAAGACAGAGGG___ATAAGAAAAATAAGTGGAACAGGAAAAGCATTAGCAAAAACAGAAAAATATGAACACAAAAG___TGAAGTGAAGACTTACGATCC VDEPTLSWSRPSTRASEVLCSTNVSHYELQVEIGRGFDNLTSVHLARHTPTGTLVTIKITNLENCNEERLKALQ|ISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHKSEVKTYD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE STE20-related kinase adapter protein beta STE STE20 STLK Q9C0K7 FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26098 UIMC1::PCAT1 ENSG00000087206.17::ENSG00000253438.5 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UIMC1 ENSG00000087206.17 protein_coding - - chr5:176905005-177022633:- chr5:176943335:- chr5:176332006-176449634:- chr5:176370336:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127031840:- chr8:127568568-128431295:+ chr8:128044085:- chr5:176914465,chr5:176914467 chr8:127053474,chr8:127053473 NA NA chr5:176341466,chr5:176341468 chr8:128065719,chr8:128065718 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none RAP80_N-terminal_ubiquitin_interaction_motif(100%)| RAP80_UIM(100%),UIM(100%)| 29 35 46 836 206 ENST00000511320.6 unknown upstream downstream duplicates(34),mismatches(5) AGACCCAGCTAAGTTCCTCTGAAACTTTTGACCTTGAAAGAGAAGTCTCTCCAGGTAGCAGAGATATCTTGGATGGAGTCAGAATAATAATGGCAGATAAGGAG___GTTGGTAACAAGGAAGATGCTGAGAAGGAAGTAGCTATTTCTACCTTCTCATCCAGTAACCAGGTATCCTGCCCGCTATGTGACCAATGCTTTCCACCCACAAAGATTGAACGACATGCCATGTACTGCAATGGTCTGATGGAGGAAGATACAG|AAAAATGGATGTTCAGAGAGAACAACAAACATGCCTCAAGATACACAGCTAGTATGTGGTAGTGACAAGAATCTAGCACAAGCAGTCTGATTTCAGGTATGTACTTCTGACTACTGTACTATATCGACTCTTATCACCCATATTCTTATC?CCCCGCCACACTCCAGAAATAACCAATAGTATTATGTTGT...___TGCCTGGTGATGAATAAAGGAACTGCACATGAATAAAGGAACTCTCAAATTCCTG TQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDT|ekwmfrennkhasrytasmw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26105 OXR1::CASC19 ENSG00000164830.19::ENSG00000254166.4 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4389 TRUE 1660 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106658185:+ chr8:107282372-107764922:+ chr8:107670413:+ CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127079133:- chr8:128084939-128239786:- chr8:128091378:- chr8:106673111,chr8:106673107 chr8:127115282,chr8:127115286 NA NA chr8:107685339,chr8:107685335 chr8:128127527,chr8:128127531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 4 23 49 429 67 ENST00000312046.10 ENST00000641794.1 downstream downstream duplicates(11),mismatches(4) TGGGCGCGCTAGTGGTGGCCGCCACCGCCGAAACCGTCGACCTCCTGGGCCCCAGTTCCGCGTCCAGCCCCGCGGCAGCATGGACTACCTGACGACGTTCACCGAGAAGAGTGGGCGCCTTCTGCGGGGCACGGCCAACCGCCTGTTGGGGTTCGGGGGCGGCGGCGAAGCCCGGCAGGTGCGCTTCGAAGATTACCTGAGGGAGCCAGCCCAGGGGGACCTCGGGTGCGGGTCCCCGCCCCACCGGCCCCCGGCGCCGTCCAGCCCGGAGGGACCTG|ATAGTTCATTGTCAGTGTATGAAAAACCTACTGATTTTTTACGTTGATTTTATATACTGCAACTTTATTGAATTCTCAACAAATGGTGTTGAAAAAACTGGATGTCCTCATGAAGAAGAATGAAATTGAACACATCACATCCCATATACAAGAATCAACTCAAAGTGGGTTGAAGACTTAAATATAAGATCTGAAACTATAAAACTATTAGAAATAAAAAACGTAAGAGGAAAGCTCCACACACTGATCTGGACAAAGATTTTTTTGACCATGACCCTAAAAGCACAGGCAACAAAAACAAAAAGAGACCATTAATCTATTAGTTATTGTATTGCATCAAACTAAAAAGCTTACGCACAGCAAAGG MDYLTTFTEKSGRLLRGTANRLLGFGGGGEARQVRFEDYLREPAQGDLGCGSPPHRPPAPSSPEGP|dsslsvyekptdflr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26106 OXR1::CASC19 ENSG00000164830.19::ENSG00000254166.4 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4389 TRUE 1660 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106658085:+ chr8:107282372-107764922:+ chr8:107670313:+ CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127079133:- chr8:128084939-128239786:- chr8:128091378:- chr8:106673111,chr8:106673107 chr8:127115282,chr8:127115286 NA NA chr8:107685339,chr8:107685335 chr8:128127527,chr8:128127531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 1 22 620 67 ENST00000438229.6 ENST00000642100.1 downstream downstream duplicates(2),mismatches(4) CCCCTGGGTCAGGTCTGATGGGCCGGTGGGCGCGCTAGTGGTGGCCGCCACCGCCGAAACCGTCGACCTCCTGGGCCCCAGTTCCGCGTCCAGCCCCGCGGCAGCATGGACTACCTGACGACGTTCACCGAGAAGAGTGGGCGCCTTCTGCGGGGCACGGCCAACCGCCTGTTGGGGTTCGGGGGCGGCGGCGAAGCCCGGCAG|ATAGTTCATTGTCAGTGTATGAAAAACCTACTGATTTTTTACGTTGATTTTATATACTGCAACTTTATTGAATTCTCAACAAATGGTGTTGAAAAAACTGGATGTCCTCATGAAGAAGAATGAAATTGAACACATCACATCCCATATACAAGAATCAACTCAAAGTGGGTTGAAGACTTAAATATAAG MDYLTTFTEKSGRLLRGTANRLLGFGGGGEARQ|ivhcqcmknllifyvdfiycnfiefstngvektgcpheee* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26107 OXR1::CASC19 ENSG00000164830.19::ENSG00000254166.4 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4389 TRUE 1660 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106581251:+ chr8:107282372-107764922:+ chr8:107593479:+ CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127079133:- chr8:128084939-128239786:- chr8:128091378:- chr8:106673111,chr8:106673107 chr8:127115282,chr8:127115286 NA NA chr8:107685339,chr8:107685335 chr8:128127527,chr8:128127531 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 0 3 5 54 67 ENST00000517686.5 ENST00000642100.1 downstream downstream duplicates(2),mismatches(1) TCTCACTTCAATAGTCTGCTAAAGATGGAGGAAAAATATGGTGCTATTCAAAGACAGTCTAGACTTAAAGATTTAGAATTTTGGATGGAAATAATCCGGTGAAATAGCAAGAACATTTGAAAGAGAACTTGACAAACCACTGCTGCAGAAAGCTGAATTCCAAGGAAATATGCCCAATATCCATGAAGCTGAGAA|ATAGTTCATTGTCAGTGTATGAAAAACCTACTGATTTTTTACGTTGATTTTATATACTGCAACTTTATTGAATTCTCAACAAATGGTGTTGAAAAAACTGGATGTCCTCATGAAGAAGAATGAAATTGAACACATCACATCCCATATACAAGAATCAACTCAAAGTGGGTTGAAGACTTAAATATAA...TTAGAAATAAAAAACGTAAGAGGAAAG...AACAAAAACAAAAAGAG...___GCACTGATGCTCTCAGTTGATCTAGCAAATAGGCATCTGTCACAGAAAATAGAGAAGATATCCCAAGAGAAGAGGAGAAACTCC MKLR|nsslsvyekptdflr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26108 ITPR3::PTCHD4 ENSG00000096433.11::ENSG00000244694.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITPR3 ENSG00000096433.11 protein_coding + + chr6:33620365-33696574:+ chr6:33621691:+ chr6:33588142-33664351:+ chr6:33589468:+ PTCHD4 ENSG00000244694.8 protein_coding - + chr6:47856673-48111197:- chr6:48024675:+ chr6:47824409-48078933:- chr6:47992411:+ chr6:33639058,chr6:33639059 chr6:47977812,chr6:47977810 NA NA chr6:33606835,chr6:33606836 chr6:47945548,chr6:47945546 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Inositol_1_4_5-trisphosphate/ryanodine_receptor(11%)| Ins145_P3_rec(0%)| 9 23 25 202 76 ENST00000374316.9 unknown downstream upstream duplicates(15),inconsistently_clipped(1),mismatches(2) CCGCCCCGGCCGCACCGAGCGTCGGGATCCGAGGTGGGAGCGTACCCCTCCCCGCTCCCCGGACGCCTCAGTCCTCCGCACTGAGCTTGGCCACGCGCCCCTAGGCGCCCCCCACGCCCTGGGCCCCGGAGGGCCGCAGCCATGAGTGAAATGTCCAGCTTTCTTCACATCGGGGACATCGTCTCCCTGTACGCCGAGGGCTCCGTCAATGGCTTCATCAGCACTTTGGG|GCACAAAACAGATGGGGCTTCTGGATGGGACAAGCTCCATAGTGGAAAGAGTGCCTGAAGCTTTGTGGCGTTCTCTGCAGGCAAGATTGCAAGATGGAAGTAAGAACCAAACCTCC...AATACAATTCAG...___ATCTGAGTCTTCCAGTCGAAGTGCAGTTGTAGATGCAACATTTTGAAGACAGAAAGAAAACAGATTTACAGCGCAAACTTGGAGCTGAGGGTATCTGTTTTCCAGTAGAAGAAAAACATTATTTATC MSEMSSFLHIGDIVSLYAEGSVNGFISTLg|hktdgasgwdklhsgksa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26109 GSDMC::PVT1 ENSG00000147697.9::ENSG00000249859.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4390 FALSE NA GSDMC ENSG00000147697.9 protein_coding - - chr8:129748196-129786624:- chr8:129762626:- chr8:130760442-130798870:- chr8:130774872:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128100980:+ chr8:128806772-129199347:+ chr8:129113226:+ chr8:129761091,chr8:129761778,chr8:129761778,chr8:129761778,chr8:129761101 chr8:128099730,chr8:128099704,chr8:128099659,chr8:128099646,chr8:128099720 NA NA chr8:130773337,chr8:130774024,chr8:130774024,chr8:130774024,chr8:130773347 chr8:129111976,chr8:129111950,chr8:129111905,chr8:129111892,chr8:129111966 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Gasdermin_pore_forming_domain(93%)| Gasdermin(87%)| 16 13 21 490 174 ENST00000276708.9 ENST00000667305.1 upstream upstream duplicates(10),mismatches(15) GTTGGATCCAGAGCCATCATTTCTGAAGGAGTGCCGGAGGAGAGGGGACAACCTGTACGTGGTGACAGAGGCTGTTGAACTGATCAACAATACTGTGCTGTACGATAGCAGTAGTGTGAATATTTTAGGGAAAATTGCTCTTTGGATTACCTATGGCAAG___GGTCAAGGCCAAGGAGAGAGTCTCAGAGTGAAGAAGAAGGCGCTGACTCTTCAGAAAGGCATGGTGATGGCTTATAAGAGgAAGCAGCTGGTTATCAAGGAGAAAG|GTTTTTTGCATGTCTGACACCCATGACTCCACCTGGACCTTATGGCTCCACCCAGAAGCAATTCAGCCCAACAGGAGGACAGCTTCAACCCATTACGATTTCATCTCTGCCCCAACCACTCAGCAGCAAGCACCTGTTACCTGTCCAtCCCCACCCCTTCCCCCAAACTGCCTTTGAAAAATCCCTAACCTATGAGCTTTGAATAAGATGAGTACGAACTTCATCGCCCAtGTGGCGTGGCCGGC LDPEPSFLKECRRRGDNLYVVTEAVELINNTVLYDSSSVNILGKIALWITYGKGQGQGESLRVKKKALTLQKGMVMAYKRKQLVIKEK|gflhv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26111 TMED7-TICAM2::KCNN2 ENSG00000251201.8::ENSG00000080709.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMED7-TICAM2 ENSG00000251201.8 protein_coding - - chr5:115578642-115626161:- chr5:115625601:- chr5:114914339-114961858:- chr5:114961298:- KCNN2 ENSG00000080709.17 protein_coding + - chr5:114055926-114496500:+ chr5:114447670:- chr5:113391623-113832197:+ chr5:113783367:- chr5:115621493,chr5:115621495 chr5:114451716,chr5:114451715 NA NA chr5:114957190,chr5:114957192 chr5:113787413,chr5:113787412 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none emp24/gp25L/p24_family/GOLD(18%)| EMP24_GP25L(0%)| 5 21 12 1532 59 ENST00000282382.8 unknown upstream downstream duplicates(9),low_entropy(1),mismatches(1) GCAGGCTGCTCGCACTGCTGCTACTGGTGCCTGGACCCGGCGGCGCCTCTGAGATCACCTTCGAGCTTCCTGACAACGCCAAGCAGTGCTTCTACGAGGACATCGCTCAGGGCACCAAGTGCACCCTGGAGTTCCAG|GTAATGCAGGAATCAATAGGATGGAATACTGCAAAGGGAAGCTTGGAGAGAGAATAGCCTCTGCACTTTGACTGTTTTGCAGTTAACCAAAGGCCATCGAGGATCAGAATTACAAAAATCAAACAGACCCATGAGCTTGAGCTCAGTTGTGCAAAATGTTTGTCAGTCATCTCTCTTCAAAACAAACACAGGACATCTTCTTAAATTCTACCTCTGTTAAACTATACTTCCCAAACAAGAACCTATCAAACCCAG RLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCTLEFQ|vmqesigwntakgslere* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26112 PTDSS1::DPYS ENSG00000156471.13::ENSG00000147647.13 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTDSS1 ENSG00000156471.13 protein_coding + + chr8:96261902-96336995:+ chr8:96309622:+ chr8:97274130-97349223:+ chr8:97321850:+ DPYS ENSG00000147647.13 protein_coding - + chr8:104330324-104467055:- chr8:104364959:+ chr8:105342552-105479283:- chr8:105377187:+ chr8:96319258,chr8:96319258 chr8:104364686,chr8:104364683 NA NA chr8:97331486,chr8:97331486 chr8:105376914,chr8:105376911 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Phosphatidyl_serine_synthase(95%)| PSS(70%)| 11 7 20 1611 21 ENST00000517309.6 unknown downstream upstream duplicates(15),low_entropy(2),mismatches(2),multimappers(1) CCGGGAAGATCAAGAGAGCTGTTCTGCAGTTCACTCCTGCTAGCTGGACCTATGTTCGATGGTTTGACCCCAAATCTTCTTTTCAGAGAGTAGCTGGAGTGTACCTTTTCATGATCATCTGGCAG___CTGACTGAGTTGAATACCTTCTTCTTGAAGCATATCTTTGTGTTCCAAGCCAGTCATCCATTAAGTTGGGGTAGAATTCTCTTTATTGGTGGCATCACAGCTCCCACAGTGAG___ACAGTACTACGCTTACCTCACCGACACACAGTGCAAGCGCGTAGGAACACAATGCTGGGTGTTTGG|GTCTTCTTCAGTCTTGACGGTGAGACTACCAGCAGCCTGATGATGGCAGTGACCAGGAGTGGACAGGGTCTACTGAG___ACCCTCCCTGATCATCTGGAAGGACTTGGTTCTTTACCTCTGGGAAGAAGACTGAGG...ACTTTTCAACCACCTAAACTCCCAAATGCCTCACTTATAT GKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFg|sssvltvrlpaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26113 TMED7::KCNN2 ENSG00000134970.14::ENSG00000080709.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMED7 ENSG00000134970.14 protein_coding - - chr5:115613210-115632992:- chr5:115625601:- chr5:114948907-114968689:- chr5:114961298:- KCNN2 ENSG00000080709.17 protein_coding + - chr5:114055926-114496500:+ chr5:114447670:- chr5:113391623-113832197:+ chr5:113783367:- chr5:115621493,chr5:115621495 chr5:114451716,chr5:114451715 NA NA chr5:114957190,chr5:114957192 chr5:113787413,chr5:113787412 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none emp24/gp25L/p24_family/GOLD(11%)| EMP24_GP25L(0%)| 5 21 12 1532 59 ENST00000456936.4 unknown upstream downstream duplicates(9),low_entropy(1),mismatches(1) GCAGGCTGCTCGCACTGCTGCTACTGGTGCCTGGACCCGGCGGCGCCTCTGAGATCACCTTCGAGCTTCCTGACAACGCCAAGCAGTGCTTCTACGAGGACATCGCTCAGGGCACCAAGTGCACCCTGGAGTTCCAG|GTAATGCAGGAATCAATAGGATGGAATACTGCAAAGGGAAGCTTGGAGAGAGAATAGCCTCTGCACTTTGACTGTTTTGCAGTTAACCAAAGGCCATCGAGGATCAGAATTACAAAAATCAAACAGACCCATGAGCTTGAGCTCAGTTGTGCAAAATGTTTGTCAGTCATCTCTCTTCAAAACAAACACAGGACATCTTCTTAAATTCTACCTCTGTTAAACTATACTTCCCAAACAAGAACCTATCAAACCCAG RLLALLLLVPGPGGASEITFELPDNAKQCFYEDIAQGTKCTLEFQ|vmqesigwntakgslere* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26114 CCDC57::LINC00511 ENSG00000176155.21::ENSG00000227036.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4391 TRUE 1661 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82201672:- chr17:80059336-80170754:- chr17:80159548:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72431224:- chr17:70286232-70636611:- chr17:70427365:- chr17:82201640,chr17:82201643 chr17:72445575,chr17:72445575 NA NA chr17:80159516,chr17:80159519 chr17:70441715,chr17:70441715 NA NA sense sense out-of-frame CDS exon/splice-site deletion high none none none 4 12 18 118 182 ENST00000694881.1 ENST00000701652.1 upstream downstream duplicates(12),mismappers(1),mismatches(3) TTCGCAAGGAGGAGGAGTGGAGGGCGCTGCAGGCACACCGCACCCAGCTGCAGGAGGCGGCTCTGCAGGACACACGGAGCCAGCTGGAGGAGGCGCAGGGGAAACTGCGGTGCCTGCAGGAGGACTTTGTCTACAACCTTCAGGTGCTGGAGGAGCGGGACCTCGAGCTGGAGCGCTATGACGCCGCCTTCGCCCAGGCCAGGGAGTGGGAAGAGGCCAGGCGGGCAGAG|GTATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAGCACGGCCTCCTGCCTTCCTGGTGCACTTTTTGGAGAACGTG___GTGGAATCAGAGGTTTCTGGCTGACTCGGTGGGTGCTTTGAACCAGGAAAGGACAAGAAAGAG___GATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGACCACCTCTTGAGAGGCAGGAGCTCTGGATTTGATCAAGAATTCTTTGCTGAGCATGGTGCC RKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAE|vffplhpglll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26115 CCDC57::LINC00511 ENSG00000176155.21::ENSG00000227036.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4391 TRUE 1661 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82207847:- chr17:80059336-80170754:- chr17:80165723:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72431224:- chr17:70286232-70636611:- chr17:70427365:- chr17:82201640,chr17:82201643 chr17:72445575,chr17:72445575 NA NA chr17:80159516,chr17:80159519 chr17:70441715,chr17:70441715 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion low none none none 0 1 0 26 182 ENST00000665763.1 ENST00000649366.1 upstream downstream duplicates(2) GTTCAGTTCCAACACCGCCTGCCTGGAGAGAGGTCAGACCACAGG|GaATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAG...CTCCCGTGtAGGCCCTTGACCTGAGGATCACTAACTCACACCCCACCGACTTCCGGCCCCCAACAAGGGCAGTGTTCCTCTTGCTCCATTCTGCTCTGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26116 OXR1::PCAT1 ENSG00000164830.19::ENSG00000253438.5 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106658185:+ chr8:107282372-107764922:+ chr8:107670413:+ PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127031840:- chr8:127568568-128431295:+ chr8:128044085:- chr8:106673111,chr8:106673107 chr8:127115282,chr8:127115286 NA NA chr8:107685339,chr8:107685335 chr8:128127527,chr8:128127531 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 7 6 17 429 206 ENST00000312046.10 unknown downstream downstream duplicates(6),mismappers(4),mismatches(1) GGTCAGGTCTGATGGGCCGGTGGGCGCGCTAGTGGTGGCCGCCACCGCCGAAACCGTCGACCTCCTGGGCCCCAGTTCCGCGTCCAGCCCCGCGGCAGCATGGACTACCTGACGACGTTCACCGAGAAGAGTGGGCGCCTTCTGCGGGGCACGGCCAACCGCCTGTTGGGGTTCGGGGGCGGCGGCGAAGCCCGGCAGGTGCGCTTCGAAGATTACCTGAGGGAGCCAGCCCAGGGGGACCTCGGGTGCGGGTCCCCGCCCCACCGGCCCCCGGCGCCGTCCAGCCCGGAGGGACCTG|AAAAATGGATGTTCAGAGAGAACAACAAACATGCCTCAAGATACACAGCTAGTATGTGGTAGTGACAAGAATCTAGCACAAGCAGTCTGATTTCAG___TGCCTGGTGATGAATAAAGGAACTGCA...___GATTCTGTATCCATCATTGCACAATGTAACTTCAACCATTATCTCCAAAAAGAAAGATTTGGGCCAGG MDYLTTFTEKSGRLLRGTANRLLGFGGGGEARQVRFEDYLREPAQGDLGCGSPPHRPPAPSSPEGP|ekwmfrennkhasrytasmw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26118 PCAT1::ZNF346 ENSG00000253438.5::ENSG00000113761.12 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127010857:- chr8:127568568-128431295:+ chr8:128023102:- ZNF346 ENSG00000113761.12 protein_coding + + chr5:177022696-177081189:+ chr5:177050703:+ chr5:176449697-176508190:+ chr5:176477704:+ chr8:126910486,chr8:126910476,chr8:126910468,chr8:126910465,chr8:126910464,chr8:126910463,chr8:126910458,chr8:126910457,chr8:126910456,chr8:126910449,chr8:126910500,chr8:126910496,chr8:126910490,chr8:126910510,chr8:126910480 chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199,chr5:177028199 NA NA chr8:127922731,chr8:127922721,chr8:127922713,chr8:127922710,chr8:127922709,chr8:127922708,chr8:127922703,chr8:127922702,chr8:127922701,chr8:127922694,chr8:127922745,chr8:127922741,chr8:127922735,chr8:127922755,chr8:127922725 chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200,chr5:176455200 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none |Zinc-finger_of_C2H2_type(49%) |zf-C2H2_2(2%),zf-met(3%) 2 4 21 85 132 unknown ENST00000511834.5 upstream upstream duplicates(9),mismatches(2) CACAGCTAGTATGTGGTAGTGACAAGAATCTAGCACAAGCAGTCTGATTTCAG___TGCCTGGTGATGAATAAAGGAACTGCACATGAATAAAGGAACTCTCAAATTCCTGTTCCCTGGAGACCACAAAGAG|CTCTGTCAAAACGCCTTACAAATCCTTTCCTTGTGGCCTCCACCTTAGCCTTGCACCAGAATAGAGAGATGATAGACCCAGACAAGTTCTGCAGCCTCTGCCATGCAACTTTCAACGACCCTGTCATGGCTCAACAACATTATGTGGGCAAGAAACACAGAAAACAGGAGACCAAGCTCAAACTAATGGCACGCTATGGGCGGCTGGCGGACCCTGCTGTCACTGACTTTCCAG___CTGGAAAGGGCTACCCCTGCAAAACATGTAAGATAGTGCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26119 TTC39B::MACROD2 ENSG00000155158.20::ENSG00000172264.19 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TTC39B ENSG00000155158.20 protein_coding - - chr9:15163622-15307360:- chr9:15199861:- chr9:15163620-15307358:- chr9:15199859:- MACROD2 ENSG00000172264.19 protein_coding + - chr20:13995369-16053197:+ chr20:15121095:- chr20:13976015-16033842:+ chr20:15101741:- chr9:15196592,chr9:15196594 chr20:15126983,chr20:15126982 NA NA chr9:15196590,chr9:15196592 chr20:15107629,chr20:15107628 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Iml2/Tetratricopeptide_repeat_protein_39(30%)| DUF3808(75%)| 14 6 6 349 19 ENST00000512701.7 unknown upstream downstream duplicates(14),mismappers(2),mismatches(1) GCTTTACAAACCTGCCAAAA___ATACAGGAAAAAATACACAGTTGTAGAATCTTTCTCAAGTCTTCTTTCTAGAGGATCCCTGGAGCAACTGAGTGAAG___AGGAAATGCATGCTGAAATCTGTTATGCCGAGTGTCTCCTACAGAAAGCTGCACTCACGTTTGTGCAG___GATGAAAATATGATCAACTTCATCAAAGGTGGACTCAAAATTAGAACAAGTTACCAAATATATAA|AATAGCTGTATCAAATGGAATTGACAAACAGAAAAAGAAGAAAACATGCAGGCAATGGAGAAATGGAAAAGAGAGGCCAAAGTGGAGACAGAAAAAGACCAAAAGAATCAATATCAGCAGACCTGGCTTTCCGACAGCGCTTCTGGATACAG___ATCCTTAATACTTCAGTCATAATACATGATATGAAGATGGTCA ALQTCQKYRKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYk|iavsngidkqkkkktcrqwrngkerpkwrqkktkrinisrpgfptalldtdp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26120 MRE11::ENSG00000286133 ENSG00000020922.13::ENSG00000286133.2 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MRE11 ENSG00000020922.13 protein_coding - - chr11:94415570-94493885:- chr11:94464113:- chr11:94148736-94227051:- chr11:94197279:- ENSG00000286133 ENSG00000286133.2 lncRNA - + chr4:157568731-157824256:- chr4:157718442:+ chr4:158489883-158745408:- chr4:158639594:+ chr11:94452678,chr11:94452682 chr4:157705175,chr4:157705175 NA NA chr11:94185844,chr11:94185848 chr4:158626327,chr4:158626327 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Calcineurin-like_phosphoesterase(100%),Mre11_DNA-binding_presumed_domain_(68%)| Metallophos(100%),Mre11_DNA_bind(58%)| 15 5 4 699 33 ENST00000323929.8 unknown upstream upstream duplicates(4) CCAGATAATCCTAAAGTAACCCAAGCCATACAAAGCTTCTGTTTGGAGAAG___ATTGAAGAAATGCTTGAAAATGCTGAACGGGAACGTCTGGGTAATTCTCACCAGCCAGAGAAGCCTCTTGTACGACTGCGA___GTGGACTATAGTGGAGGTTTTGAACCTTTCAGTGTTCTTCGCTTTAGCCAGAAATTTGTGGATCGGGTAGCTAATCCAAAAGACATTATCCATTTTTTCAGGCATAGAGAACAAAAGGAAAAAACAG|GCTGTCAGTTATCCCCCTGACTGGAAGCTAGAAGTGTGGCTTCAAACTGAGTCTCTGGGAATGTGCAAGAAAAcTGGACTCCATGCTCTGGTGTAAGACTTCCAGATGCTGTTCTAGAATTCTTCTGTTCTTTCTTATTTGAGTATGTCACTTTGAGCTTGCTTGGGTGATGACCACTCACTGATCTCACATTCTCTCATTTATGTGCTTTGGTTTAGTGATTTAAAAACATGTGTGGGAATTTCATTTAACTAATTAAATAAAATAGGC PDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKT|gcqlsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548l chr11:94466495-94466580:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26121 CLCN3::PDGFC ENSG00000109572.16::ENSG00000145431.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLCN3 ENSG00000109572.16 protein_coding + + chr4:169612633-169723673:+ chr4:169690652:+ chr4:170533784-170644824:+ chr4:170611803:+ PDGFC ENSG00000145431.11 protein_coding - + chr4:156760454-156971799:- chr4:156897730:+ chr4:157681606-157892951:- chr4:157818882:+ chr4:169692318,chr4:169692319 chr4:156895291,chr4:156895289 NA NA chr4:170613469,chr4:170613470 chr4:157816443,chr4:157816441 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Voltage_gated_chloride_channel(5%)| Voltage_CLC(0%)| 10 0 12 196 7 ENST00000347613.9 unknown downstream upstream duplicates(4) AAAAAGTTTGTATGATGCGTGGTCAGGATGGCTAGTAGTAACACTAACAGGATTGGCATCAG___GGGCACTGGCCGGATTAATAGACATTGCTGCCGATTGGATGACTGACCTAAAGGAGGGCATTTGCCTTAGTG...TGGGGATCTAcTGAAACAACATTTGAAGAGAGGGATAAATGTCCACAGTGGAAAACATGGGCAGAATTAATCATAGGTCAAGCAGAG___GGTCCTGGTTCTTATATCATGAACTACATAATGTACATCTTCTGGGCCTTGAGTTTTGCCTTTCTTGCAGTTTCCCTGGTAAAGGTATTTGCTCCATATGCCTGTGGCTCTGGAATTCCAGAG|AGATTCCTATGAGCAACTCAATCGACAAACGGAAGATACTCGCTAATGAATAAAACACATAAAAAGTTACACTCTGAAGAGAGCCCCTTTAACTCTTCATTATAACTAAGAAC WGStETTFEERDKCPQWKTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPE|rfl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26122 INPP5A::PWWP2B ENSG00000068383.19::ENSG00000171813.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 2396 FALSE NA FALSE NA INPP5A ENSG00000068383.19 protein_coding + + chr10:132537787-132783480:+ chr10:132607956:+ chr10:134351291-134596984:+ chr10:134421460:+ PWWP2B ENSG00000171813.14 protein_coding + + chr10:132397168-132417859:+ chr10:132417061:+ chr10:134210672-134231363:+ chr10:134230565:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none Exo_endo_phos(28%)| 5 15 2 47 195 ENST00000368594.8 ENST00000631148.2 downstream upstream duplicates(2),low_entropy(1),mismatches(3) GCGGCCGCCCCGGGCACCGCGGTGCTGCTGGTCACGGCCAACGTGGGCTCGCTCTTCGACGAC___CCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAG|GTCACCGACGATGAGGGCGCACCTGCTGTCCTGGAGCTTCCGATCTCTGTTCGGGGACCCTGTGAGCCTTCTGGCCGGCTGCGTGCAGAGCCCACTGGGCACGGTGGTCGGCCTGGTGTGAGGCCCCCCGGGGACCGGCAGTGTGTCCAGGGAGGGGATGGCCCTGAGCCCAGCGGCTCCTCCCGCTGAGTGTATTTCTTCCCACCACTCAGCGCATGGCTGCCCTGGCTCACGAGGCAGTCGGGACTCGTGACTTGCTGGCTGCTGGCTGCTGCTGCCTCGCGCGCTGGGGTTCCATGGAGGAACTGGGCCTGCCGCCCCGGCCTCACCTGCTGCCCGCATGCTGGGGTCCCATGGAGGAACCAGGCCTGGCGCCCCGGCCTCGC AAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQ|vtddegapavlelpisvrgpcepsgrlraeptghggrpgvrppgdrqcvqggdgpepsgssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26125 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2397 TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39210786:- chr21:40556102-40693485:- chr21:40582712:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Bromodomain(67%),WD_domain__G-beta_repeat(100%)|Biotin-protein_ligase__N_terminal(21%),Biotin/lipoate_A/B_protein_ligase_family(100%),Biotin_protein_ligase_C_terminal_domain(100%) Bromodomain(53%),WD40(100%)|BPL_C(100%),BPL_LplA_LipB(100%),BPL_N(0%) 3 4 12 182 142 ENST00000333229.6 ENST00000336648.8 upstream downstream duplicates(4),mismatches(1) TAAACCACAAGCTGGTGAATGGGGTCAGAAATCAAGAGATGAAGAATGTGATAGAATTATCAGTGGTATAGATCAACTTTTGAATCTTG___ATATAGCAGCAG...CGAACCTGAGAGTGTAATTGaAAGATCAGCTAAAAAGATAACTGACCAACTTTTAAAATTTATCAA___GAATCAACACTGTACAAATATCTCAGAACTTTCTA...GATGAGCAAAATGCTGAGGATTTG___GATGATAGTGATCTTCCTAAAACATCTTCTGGAAGaAGGAGA___GTCCATGATGGGAAAAAAAGCATCAGAGCTACGAACTATGTTGAAAGCAACTGGAAGAAACAGTGTAAGGAACTAGTGAACTTAATTTTTCAGTGTGAAGATTCTGAACCATTTAGACAACCTGTTGATTTGGTTGAATATCCA|GAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTTAGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTTTGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTG DEQNAEDLDDSDLPKTSSGRRRVHDGKKSIRATNYVESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYP|EIRDPLMQWLGKHVDSEGEIKSGQLSLRFVSSYVSEVEITPSCIPVVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26126 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2398 TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39212666:- chr21:40556102-40693485:- chr21:40584592:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Bromodomain(51%),WD_domain__G-beta_repeat(100%)|Biotin-protein_ligase__N_terminal(21%),Biotin/lipoate_A/B_protein_ligase_family(100%),Biotin_protein_ligase_C_terminal_domain(100%) Bromodomain(34%),WD40(100%)|BPL_C(100%),BPL_LplA_LipB(100%),BPL_N(0%) 4 2 9 191 142 ENST00000333229.6 ENST00000336648.8 upstream downstream duplicates(3) GCAAGATCAGCTAAAAAGATAACTGACCAACTTTTAAAATTTATCAA___GAATCAACACTGTACAAATATCTCAGAACTTTCTAACACATCTGAAAATGATGAGCAAAATGCTGAGGATTTG___GATGATAGTGATCTTCCTAAAACATCTTCTGGAAGaAGGAGA|GAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTTAGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTTTGTTTGCCGAAGTGACCCCCACAA ARSAKKITDQLLKFIKNQHCTNISELSNTSENDEQNAEDLDDSDLPKTSSGRRR|EIRDPLMQWLGKHVDSEGEIKSGQLSLRFVSSYVSEVEITPSCIPVVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPT NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26127 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39210866:- chr21:40556102-40693485:- chr21:40582792:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense unknown CDS/splice-site CDS/splice-site deletion high none Bromodomain(51%),WD_domain__G-beta_repeat(100%)|Biotin-protein_ligase__N_terminal(21%),Biotin/lipoate_A/B_protein_ligase_family(100%),Biotin_protein_ligase_C_terminal_domain(100%) Bromodomain(52%),WD40(100%)|BPL_C(100%),BPL_LplA_LipB(100%),BPL_N(0%) 2 1 11 158 142 ENST00000473813.1 ENST00000336648.8 upstream downstream duplicates(4) CAcCACTGTACAAATATCTCAGAACTTTCTAACACATCTGAAAATGATGAGCAAAATGCTGAGGATTTG___GATGATAGTGATCTTCCTAAAACATCTTCTGGAAGaAGGAGA___GTCCATGATGGGAAAAAAAGCATCAGAGCTACGAACTATGTTGAAAGCAACTGGAAGAAACAGT|GAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTTAGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTTTGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGG___GCTGATGTTTCAGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26128 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39247701:- chr21:40556102-40693485:- chr21:40619627:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion low none WD_domain__G-beta_repeat(100%)|Biotin-protein_ligase__N_terminal(21%),Biotin/lipoate_A/B_protein_ligase_family(100%),Biotin_protein_ligase_C_terminal_domain(100%) WD40(100%)|BPL_C(100%),BPL_LplA_LipB(100%),BPL_N(0%) 0 1 0 211 142 ENST00000333229.6 ENST00000336648.8 upstream downstream none GAGTTATCTTCTGGAAATGAGTCTTCAAGCTCTGTAAGACAT|GAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCC ELSSGNESSSSVRH|EIRDPLMQWLGKHVDSEGEIK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26129 SMARCA2::DMAC1 ENSG00000080503.25::ENSG00000137038.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SMARCA2 ENSG00000080503.25 protein_coding + + chr9:1980290-2193624:+ chr9:2070471:+ chr9:1980290-2193624:+ chr9:2070471:+ DMAC1 ENSG00000137038.8 protein_coding - + chr9:7796500-7888380:- chr9:7823337:+ chr9:7796500-7888380:- chr9:7823337:+ chr9:2070988,chr9:2070986 chr9:7803255,chr9:7803250 NA NA chr9:2070988,chr9:2070986 chr9:7803255,chr9:7803250 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none HSA_domain(100%),QLQ(100%)| HSA(100%),QLQ(100%)| 4 4 11 639 62 ENST00000357248.8 unknown downstream upstream duplicates(5) GAAAACTGATTGATCAAAAGAAAGACAGGCGTTTAGCTTACCTTTTGCAGCAGACCGATGAGTATGTAGCCAATCTGACCAATCTGGTTTGGGAGCACAAGCAAGCCCAGGCAGCCAAAGAGAAGAAGAAGAGGAGGAGGAGGAAGAAG___AAGGCTGAGGAGAATGCAGAGGGTGGGGAGTCTGCCCTGGGACCGGATGGAGAG|ATATTGCTGTCGTTGTAAACTGGAGAGAGATGCTCCTGTTGGCCTTGAACAACCAAGCTGCCATGTTGTGATTGGGACACATGGCTATCACCTGAGGGCAGGCCCTAGGAGCTAAGAGTGACCCCTGGCCAAGGAACCCTATTCTTCTTACAACCTGAATGAGTTTGCAGGAAGACTAAGATCCACCTGAGAACACAGCCCCTGCTGACATGGTGATTTCAGCCTAGGCAGACTCTGAGCAAGAAACCCAGCAAGAAACACTATGCTGACTTCTGACCTAGAGAACTGTGAGGTAATAGATGCATGTTGTTTT KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGE|illsl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26130 HARBI1::AMBRA1 ENSG00000180423.4::ENSG00000110497.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2399 TRUE 4394 TRUE 1663 HARBI1 ENSG00000180423.4 protein_coding - - chr11:46602861-46617909:- chr11:46617124:- chr11:46624411-46639459:- chr11:46638674:- AMBRA1 ENSG00000110497.15 protein_coding - - chr11:46396414-46594125:- chr11:46494204:- chr11:46417964-46615675:- chr11:46515754:- chr11:46616497,chr11:46616504 chr11:46499601,chr11:46499605 NA NA chr11:46638047,chr11:46638054 chr11:46521151,chr11:46521155 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through high none none none 1 14 4 31 122 ENST00000326737.3 ENST00000683756.1 upstream downstream duplicates(9),mismatches(1) TCCGGAGGAGGGCCCAACCCGGCTGGGTGGGTGGGAAGTGTGGCTGGTAACCTGGCAGCCGCGGAGAG|GGACAATGGTGACAGATCCAGGCACCGAGCTCCACGCAATGCCCGGATGTCTGCACCTTCGCTTGGACGCTTTGTCCCAAG___GCGTTTCTTGCTGCCTGAGTACTTGCCTTATGCTGGGATTTTTCATGAACGTGGACAGCCTGGCTTGGCTACTCACTCTTCTGTTAACAGGGTCCTGGCAG___GGGCAGTGATCGGTGATGGACAGTCTGCTGTGGCCAGTAACATTGCCAATACTACCTACCGGCTCCAGTGGTGGGACTTCACTAAGTTTGACCTCCCTGAAATCAGTAATG___CTTCCGTGAATGTGCTGGTGCAGAACTGCAAGATCTACAATGATGCCAGCTGTGACATTTCTGCAGATGGCCAGCTCCTGGCAGCTTTCATaCCCAGCAGCCAGAGGGGCTTTCCTGATGAAGGCATCCTGGCAGTGTACTCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-3160-1 chr11:46451805-46451889:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26132 HARBI1::AMBRA1 ENSG00000180423.4::ENSG00000110497.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4394 TRUE 1663 HARBI1 ENSG00000180423.4 protein_coding - - chr11:46602861-46617909:- chr11:46617562:- chr11:46624411-46639459:- chr11:46639112:- AMBRA1 ENSG00000110497.15 protein_coding - - chr11:46396414-46594125:- chr11:46494204:- chr11:46417964-46615675:- chr11:46515754:- chr11:46616497,chr11:46616504 chr11:46499601,chr11:46499605 NA NA chr11:46638047,chr11:46638054 chr11:46521151,chr11:46521155 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none none none 0 1 1 127 122 ENST00000532281.1 ENST00000683756.1 upstream downstream none TGAGGGTTCCGCGCTCCGGAGCTGCAGTGACCGTACACGTCGCCGATAGACACCTAAGGCTTCAGAAGGGTCCTGGCTCGCAGGCCCCAGACGTTTTGCTC...TTTGTTTTCATCCGCTTCG|GGACAATGGTGACAGATCCAGGCACCGAGCTCCACGCAATGCCCGGATGTCTGCACCTTCGCTTGGACGCTTTGTCCCAAG___GCGTTTCTTGCTGCCTGAGTACTTGCCTTATGCTGGGATTTTTCATGAACGTGGACAGCCTGGCTTGGCTACTCACTCTTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-3160-1 chr11:46451805-46451889:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26134 EPS15::OSBPL9 ENSG00000085832.18::ENSG00000117859.19 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EPS15 ENSG00000085832.18 protein_coding - - chr1:51354263-51519328:- chr1:51444889:- chr1:51819935-51985000:- chr1:51910561:- OSBPL9 ENSG00000117859.19 protein_coding + - chr1:51577179-51798427:+ chr1:51676655:- chr1:52042851-52264099:+ chr1:52142327:- chr1:51440907,chr1:51440918 chr1:51681214,chr1:51681222 NA NA chr1:51906579,chr1:51906590 chr1:52146886,chr1:52146894 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cytoskeletal-regulatory_complex_EF_hand(100%)| EF-hand_4(100%)| 0 2 16 239 18 ENST00000371733.8 unknown upstream downstream duplicates(9),mismappers(19),mismatches(4) GAAAAACG___TGGGTTGTATCCCCTGCAGAAAAAGCTAAATATGATGAAATCTTCCTGAAAACTGATAAAGATATGGACGGATTTGTGTCTGGATTGGAGGTCCGTGAAATATTCTTGAAAACAGGTTTACCTTCTACCTTACTAGCCCATATATG___GTCATTATGCGACACAAAGGACTGTGGGAAGCTTTCAAAGGATCAGTTTGCCTTGGCTTTTCACTTAATCAGTCAGAAGTTAATCAAGGGCATTGATCCTCCTCACGTTCTTACTCCTGAAATGATTCCACCATCAGACAGGGCCAGTTTACAAAAG|ATGGAGTCTTGCTCTGTCGGCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGAAATCTTTGCCTCCTGAGTTCAAGTCATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACATCACCACCACTCCCGGCTAATTAGCGTCAAATTTTTTAATTGCATTAAACTGCACTGTAATTTAAAGTTTCTTATTTTATATTAATTCCGTTTTTTTTTGAGAAGGCATCTCACTGTGTTGTCCAGGCGGGGGTGCAATGGTGGGATCTCGGCTCACTACAACTTCCGACTCCCGAGTTCAAGCA KTWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQKLIKGIDPPHVLTPEMIPPSDRASLQK|mescsvgqagvqwrdlgslkslppefkssshlslpsswdyrhitttpg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE epidermal growth factor receptor pathway substrate 15 (AF1p) 1 Yes ALL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26135 RNF130::STK3 ENSG00000113269.14::ENSG00000104375.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF130 ENSG00000113269.14 protein_coding - - chr5:179911651-180072113:- chr5:180013061:- chr5:179338651-179499113:- chr5:179440061:- STK3 ENSG00000104375.17 protein_coding - + chr8:98371228-98942827:- chr8:98883232:+ chr8:99383456-99955055:- chr8:99895460:+ chr5:179985496,chr5:179985504 chr8:98872982,chr8:98872974 NA NA chr5:179412496,chr5:179412504 chr8:99885210,chr8:99885202 NA NA sense antisense out-of-frame CDS/splice-site exon translocation/5'-5' high none PA_domain(100%)| PA(100%)| 4 2 12 589 10 ENST00000522208.6 unknown upstream upstream duplicates(4),mismatches(1) CTCATCCAG___GCACTGGAGATATTATTGCTGTCATGATAACAGAATTGAGGGGTAAGGATATTTTGAGTTATCTGGAGAAAAACATCTCTGTACAAATGACAATAGCTGTTGGAACTCGAATGCCACCGAAGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAATATCCTTTATTGTTTTGATGATTATTTCTTCAGCATGGCTCATATTCTACTTCATTCAGAAGATCAGGTACACAAATGCACGCGACAGGAACCAG|CTAAGGGGGAGAGGGGAGTCCTGAATCTGATTTTTTAAAAAGTGCCTCCAGGCAAGTCTGATGATTAACCATCCAGTTTGGAAACC...CACCATTCATCACATTACTTATGGATTAGGCTGGCCTGCCAGAAGGAAAATACAGCATATTACAAAATTTCATCGAAACTATCTAAATCACTCTCTTGGGCTAAAATATCTGCAAGGAAATCCAAACACTCTTCTGTATTACTGAAGTCCTTTGTTT HPGTGDIIAVMITELRGKDILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNARDRNQ|lrgrges* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-340 chr5:180015303-180015397:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26136 ATRN::VPS16 ENSG00000088812.18::ENSG00000215305.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2400 TRUE 4395 TRUE 1664 ATRN ENSG00000088812.18 protein_coding + + chr20:3471018-3651118:+ chr20:3584880:+ chr20:3451665-3631765:+ chr20:3565527:+ VPS16 ENSG00000215305.10 protein_coding + + chr20:2840703-2866732:+ chr20:2859719:+ chr20:2821349-2847378:+ chr20:2840365:+ chr20:3590534 chr20:2848299 NA NA chr20:3571181 chr20:2828945 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none CUB_domain(100%),Kelch_motif(100%),Lectin_C-type_domain(100%),Plexin_repeat(100%)|Vps16__C-terminal_region(100%),Vps16__N-terminal_region(96%) CUB(100%),Kelch_1(100%),Kelch_5(100%),Kelch_6(100%),Laminin_EGF(61%),Lectin_C(100%),PSI(100%)|Vps16_C(100%),Vps16_N(15%) 4 5 9 300 277 ENST00000262919.10 ENST00000380469.7 downstream upstream duplicates(5) CTGGATTCTGTGGAATTTTATCAGAACCCAGTACTCGGGGACTGAAGGCTGCAACCTGCATCAACCCACTCAATGGTAGTGTCTGTGAAAGGCCTG___CAAACCACAGTGCTAAGtAGTGCCGGACACCATGTGCCTTGAGGACAGCATGTGGAGATTGCACCAGCGGCAGCTCTGAGTGCATGTGGTGCAGCAACATGAAGCAGTGTGTGGACTCCAATGCCTAtGTGGCCTCCTTCCCTTTTGGCCAGTGTATGGAATGGTATACGATGAGCACCTGCCCCC___...AACCAGGCTGTGGCTGGTGTACTGATCCCAGCAATACTGGCAAAGGGAAATGCATAGAGGGTTCCTATAAAGGACCAGTGAAGATGCCTTCGCAAGCCCCTACAGGAAATTTCTATCCACAGCCCCTGCTCAATTCCAGCATGTGTCTAGAGGACAGCAGATACAACTGGTCTTTCATTCACTGTCCAG|GAAATATGAGCTGTACAGCATGGACTGGGACCTGAAGGAGGAACTCAGGGATTGCCTGGTGGCTGCTGCACCCTATGGGGGCCCCATTG___CACTGCTGAGGAACCCCTGGCGGAAGGAGAAAGCTGCTAGTGTGAGGCCAGTGC?CGAT...GGCCAGCCTGCTG___TGGAAGAGTGGACCCGTGGTGTCCCTGGGCTGGTCAGCTGAGGAGGAGCTGCTCTGTGTGCAGGAAGATGGTGCTGTACTGGTTTATGGGCTTCAT?GTGACTTCCGGAGACACTTCAGCATGGGCAAT___GAAGTGCTCCAGAACCGGGTTCTGGATGCCCGGATCTTTCACACTGAG PGCGWCTDPSNTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCP|gnmsctawtgt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26137 ATRN::VPS16 ENSG00000088812.18::ENSG00000215305.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4395 TRUE 1664 ATRN ENSG00000088812.18 protein_coding + + chr20:3471018-3651118:+ chr20:3584880:+ chr20:3451665-3631765:+ chr20:3565527:+ VPS16 ENSG00000215305.10 protein_coding + + chr20:2840703-2866732:+ chr20:2860748:+ chr20:2821349-2847378:+ chr20:2841394:+ chr20:3590534 chr20:2848299 NA NA chr20:3571181 chr20:2828945 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none CUB_domain(100%),Kelch_motif(100%),Lectin_C-type_domain(100%),Plexin_repeat(100%)|Vps16__C-terminal_region(100%),Vps16__N-terminal_region(59%) CUB(100%),Kelch_1(100%),Kelch_5(100%),Kelch_6(100%),Laminin_EGF(61%),Lectin_C(100%),PSI(100%)|Vps16_C(100%),Vps16_N(10%) 1 0 0 300 291 ENST00000262919.10 ENST00000380469.7 downstream upstream duplicates(1) GAGCAACCAGGCTGTGGCTGGTGTACTGATCCCAGCAATACTGGCAAAGGGAAATGCATAGAGGGTTCCTATAAAGGACCAGTGAAGATGCCTTCGCAAGC...TCTTTCATTCACTGTCCAG|GTCTGCAAAGTGCgCCCTCCTGCTGGACTGTGCTGTGCCAGGACCGAGTGGCACACATTCTTCTGGCTGTGGGGCCTGACCT SFIHCP|gLQSAPSCWTVLCQDRVAHILLAVGPD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26138 SLC20A2::DBX2 ENSG00000168575.10::ENSG00000185610.6 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLC20A2 ENSG00000168575.10 protein_coding - - chr8:42416475-42541926:- chr8:42501031:- chr8:42273993-42397069:- chr8:42358549:- DBX2 ENSG00000185610.6 protein_coding - + chr12:45014672-45051099:- chr12:45043472:+ chr12:45408455-45444882:- chr12:45437255:+ chr8:42491760,chr8:42491762 chr12:45030458,chr12:45030456 NA NA chr8:42349278,chr8:42349280 chr12:45424241,chr12:45424239 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 1 7 10 103 26 ENST00000520262.6 unknown upstream upstream duplicates(7) GCCGGGGTTAGTTCTATGAGTTGTAAAAGTAGAAGTTAGCAAGCTGAAATGTGACTTCTCGGCCTAATGTGGTAGGATATCTATTTTAGACTTCAGATTGTGTTTGTGATCAGGAGAGCAGTCTTCTGAAGAATTGTGGCTCAGTTTTCTTGGAAACTACTT|AATCCAGCCACTCTGCTATAGAAAGGCCAAGAAACTTGGAAAGCCCAAGTGTGAATGCTGCAATAAACAGCTCCAGTTGAGCAACCAGTCAACAGATGGCATCAGTGCCAGCCAT___GAAAAAGACATCTGGTGGTCACTAAGAACAGGAAGGAGGTGGCACACCCAAAGAGAACTATCATGGAGTCTAAGCACAGCTTAGGTTCCAATATCTGAACCACATCCATGGCAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26139 TRMT11::NCOA7 ENSG00000066651.20::ENSG00000111912.20 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2401 FALSE NA FALSE NA TRMT11 ENSG00000066651.20 protein_coding + + chr6:125986479-126203817:+ chr6:125998684:+ chr6:126307625-126524963:+ chr6:126319830:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125878263:+ chr6:126102307-126253180:+ chr6:126199409:+ chr6:125999324,chr6:125999322 chr6:125877560,chr6:125877555 NA NA chr6:126320470,chr6:126320468 chr6:126198706,chr6:126198701 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |LysM_domain(100%),TLD(100%) |LysM(100%),TLD(100%) 4 6 8 132 111 ENST00000648977.1 ENST00000368357.7 downstream upstream duplicates(1),mismatches(1) TGCCAA___GTCTATATTTGAACTATGGGGTCATGGACAATCTCCTGAGGAGCTGTACAGTTCTCTTAAAAACTACCCTGTGGAGAAGATG___GTTCCATTTCTACATTCGGACTCTACATATAAAATAAAGATTCACACTTTTAATAAGACATTGACACAAGAAGAGAAAATCAAGCGAATAGAT___GCACTTGAATTTCTGCCATTTGAAGGAAAAGTGAATTTAAAGAAACCGCAACATGTATTTTCTGTTTTGGAGGATTATGGTTTAGACCCAAACTGCATCCCTGAGAATCCACATAATATTTATTTTGGTAGATGG|GCTGGAAACCAGGACACCCTAAACTCCATAGCACTGAAATTTAACATCACTCCCAATAAATTGGTGGAACTGAATAAACTTTTCACACATACTATTGTTCCAGGCCAG___GTCCTTTTTGTGCCAGATGCCAACTCTCCTTCCAGTACCTTAAGGCTATCATCATCCAGTCCTGGTGCTACTGTCTCTCCTTCATCATCAGATGCAGAATATGATAAATTGCCT___GATGCTGACTTAGCAC AKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLTQEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRW|AGNQDTLNSIALKFNITPNKLVELNKLFTHTIVPGQVLFVPDANSPSSTLRLSSSSPGATVSPSSSDAEYDKLPDADLA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma LUNG no_match 126342426|126314968|126334247|126342426 FALSE|FALSE|FALSE|FALSE 126242089|126242089|126243828|126249320 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26143 ITSN1::ENSG00000235609 ENSG00000205726.15::ENSG00000235609.7 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33735204:+ chr21:35014706-35272165:+ chr21:35107509:+ ENSG00000235609 ENSG00000235609.7 lncRNA - + chr21:14818843-15014430:- chr21:14902568:+ chr21:16191164-16386751:- chr21:16274889:+ chr21:33747902,chr21:33747902 chr21:14894652,chr21:14894649 NA NA chr21:35120207,chr21:35120207 chr21:16266973,chr21:16266970 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cytoskeletal-regulatory_complex_EF_hand(48%)| EF-hand_4(33%)| 5 3 6 140 14 ENST00000381318.8 unknown downstream upstream duplicates(2),mismatches(2) AGCGAAGCATGATCAGCAGTTCCATAGTTTAAAGCCAATATCTGGATTCATTACTG___GTGATCAAGCTAGAAACTTTTTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATG___GGCACTAGCTGACATGAATAATGATGGAAGAATGGATCAAGTGGAGTTTTCCATAGCTATGAAACTTATCAAACTGAAGCTACAAGGATATCAGCTACCCTCTGCACTTCCCCCTGTCATGAAACAGCAACCAGTTGCTATTTCTAGCGCACCAGCATTTG|AAAACCTTAGGATTGGAAGAGTTTCTCCCACCACCCAAGAAATTCTGGCACGTTCCAGAGAATGACTTTGCTGGTGAAGAGACAGCTGGTTGTGCTG___GAAATAATGGAAAACAGAAAGATTTTCCATCTTGTCAAGCAGATGGAATGGGCTTGGATAGAAAGAAGAGAGGAAAATGATAGAATAAAC AKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPAF|enlrigrvspttqeilarsre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26144 ITSN1::LINC02246 ENSG00000205726.15::ENSG00000281903.3 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33735204:+ chr21:35014706-35272165:+ chr21:35107509:+ LINC02246 ENSG00000281903.3 lncRNA - + chr21:14824254-14918552:- chr21:14902568:+ chr21:16196575-16290873:- chr21:16274889:+ chr21:33747902,chr21:33747902 chr21:14894652,chr21:14894649 NA NA chr21:35120207,chr21:35120207 chr21:16266973,chr21:16266970 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Cytoskeletal-regulatory_complex_EF_hand(48%)| EF-hand_4(33%)| 5 3 6 140 14 ENST00000381318.8 unknown downstream upstream duplicates(2),mismatches(2) AGCGAAGCATGATCAGCAGTTCCATAGTTTAAAGCCAATATCTGGATTCATTACTG___GTGATCAAGCTAGAAACTTTTTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATG___GGCACTAGCTGACATGAATAATGATGGAAGAATGGATCAAGTGGAGTTTTCCATAGCTATGAAACTTATCAAACTGAAGCTACAAGGATATCAGCTACCCTCTGCACTTCCCCCTGTCATGAAACAGCAACCAGTTGCTATTTCTAGCGCACCAGCATTTG|AAAACCTTAGGATTGGAAGAGTTTCTCCCACCACCCAAGAAATTCTGGCACGTTCCAGAGAATGACTTTGCTGGTGAAGAGACAGCTGGTTGTGCTG___GAAATAATGGAAAACAGAAAGATTTTCCATCTTGTCAAGCAGATGGAATGGGCTTGGATAGAAAGAAGAGAGGAAAATGATAGAATAAAC AKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPVAISSAPAF|enlrigrvspttqeilarsre* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26152 GON4L::KHDC4 ENSG00000116580.20::ENSG00000132680.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 2404 TRUE 4399 TRUE 1665 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155853276:- chr1:155719450-155829191:- chr1:155823067:- KHDC4 ENSG00000132680.11 protein_coding - - chr1:155913045-155934413:- chr1:155927156:- chr1:155882836-155904204:- chr1:155896947:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none none none 2 5 6 109 261 ENST00000615926.4 ENST00000368321.8 upstream downstream duplicates(2) CTGAGCTCTGGAATGCTCACCCAGAACACAAATGTACCAATTCTAGAAGGTGTTGATGTGGCCATCTCTCAGGGAATCACCCTACCTTCCTTGGAGTCTTTTCACCCCCTTAATATACACATTGGTAAAGGAAAACTCCACGCTACTGGCTCAAAGAGAGGGAAAAAAATGACACTCAGGCCTGGGCCAGTTACCCAAGAAGACAGATGTGATCATCTTACCCTAAAGGAGCCTTTTTCAGGAGAGCCTAGTGAAGAAGTCAAGGAAGAAGGAG|GGATCGTCCATTATATCTTCATGTTCAGGGCCAGACACGGGAATTAGTGGACA___GAGCTGTAAACCGGATCAAAGAAATTATCACCAATGGAGTGGTAAAAGCTGCCACAGGAACAAGTCCAACTTTTAATGG...___ATGCATTATGTTCAAGATAAATTATTTGTGGGTCTAGA LSSGMLTQNTNVPILEGVDVAISQGITLPSLESFHPLNIHIGKGKLHATGSKRGKKMTLRPGPVTQEDRCDHLTLKEPFSGEPSEEVKEEG|givhyifmfrarhgn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26153 GON4L::KHDC4 ENSG00000116580.20::ENSG00000132680.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4399 TRUE 1665 GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155853276:- chr1:155719450-155829191:- chr1:155823067:- KHDC4 ENSG00000132680.11 protein_coding - - chr1:155913045-155934413:- chr1:155925843:- chr1:155882836-155904204:- chr1:155895634:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none none none 0 1 0 109 247 ENST00000615926.4 ENST00000368321.8 upstream downstream none GGAGAGCCTAGTGAAGAAGTCAAGGAAGAAGGAG|ATGCATTATGTTCAAGATAAATTATTTGTGGGTCTAGAACATGCTGTACCCACTTTTAATGTCAAGG...CAAAGGTTCAGGCTGCATTGAGCCAGCATCTGGCCGAGAAGCTTTTGAACCTATGTATATTTACATCAG___TCACCCCAAACCAGAAGGCCTGGCTGCTGCCA GEPSEEVKEEG|dalcsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26154 NAA15::CAMK4 ENSG00000164134.14::ENSG00000152495.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NAA15 ENSG00000164134.14 protein_coding + + chr4:139301446-139420033:+ chr4:139301831:+ chr4:140222600-140341187:+ chr4:140222985:+ CAMK4 ENSG00000152495.11 protein_coding + - chr5:111223653-111494886:+ chr5:111407453:- chr5:110559351-110830584:+ chr5:110743151:- chr4:139305753 chr5:111425718 NA NA chr4:140226907 chr5:110761416 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 3 1 8 398 3 ENST00000296543.10 unknown downstream downstream duplicates(6),mismatches(6) GTGAACCGCCGACGGAGACCCGTAGTGGGGGAGGCGGCGGCAGCGTTAAGTGAGAAAGGAAAAAAGACAACGAGGAAAAAGGAGGTGTCCGGGTAGGGCAACGCGGCGACACCCGAGGCCTGGTGGTGGCGGCGGATCGAGATATTCAAGGCTGAAGCAGCTACGGAACGGCAGCGGCGGCGG?CGG?CAAACTGACTGACCGAGCCGGGgGGTGGCGGGAGCAGCGGGAGCAGCCGGAACGATGCCGGCCGTGAGCCTCCCGCCCAAGGAGAATGCGCTCTTCAAGCGGATCTTG|AAACAGTGCATGCCTTTCTGGACCTCAAAAGGACACT___CATGCCAGCAACAGTCACAGAATGATGGAGAACAGGATTAAGTTTATGCACATTTGAAGAAAGATTCAACTGAAGTTGGAA MPAVSLPPKENALFKRIL|kqcmpfwtskghscqqqsqndgeqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26157 PUS7::ATXN7L1 ENSG00000091127.14::ENSG00000146776.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2406 FALSE NA FALSE NA PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105522052:- chr7:105080108-105162718:- chr7:105162499:- ATXN7L1 ENSG00000146776.15 protein_coding - - chr7:105604772-105876599:- chr7:105665288:- chr7:105245219-105517045:- chr7:105305735:- chr7:105517835,chr7:105517838 chr7:105722753,chr7:105722753 NA NA chr7:105158282,chr7:105158285 chr7:105363199,chr7:105363199 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |SCA7__zinc-binding_domain(100%) |SCA7(100%) 0 4 6 97 21 ENST00000481939.5 ENST00000419735.8 upstream downstream duplicates(4),mismatches(1) CCGCCGGTGAGTCGGCTGGAGCGCATCTGGTCCTCCGCGCGGAAAGCGCTGCTTTTGCCTGGCCGCCCTAGCCGCTGGCTCATCCAAGTGGCCTTCGCCGCTCTCTTGCGTCCCAACCAGAGCGCTGGCCACCTCGCCGCCCAGCTCACGCCGCGCCCGCGCTCCCAGGCTCCGG|AGAGAAGACACGGTTCAATGTGTAGACCTTCTCCCTCTCCAGTGTCTCCAGCCTCCAATCCCAGGACATCACTAGTACAGGTGAAAACAAAAGCCTGTCTCAGCGGCCATCACTCTGCCAGCAGCACCTCAAAGCCATTCAAAACGCCCAAAGACAATCTACTTACCTCCAGCAGCAAACAGCACACAGTCTTTCCTGCGAAAGGATCAAGGGATAAACCATG___TGTTCCAGTTCCTGTAGTCAGTTTAGAGAAAATTCCTAACCTAGTGAAGGCAGATGGTGCCAATGTCAAAATGAACTCCACAACCACTACTGCAGTTTCTGCCTCCTCC...CCTCCTTTAATTAAGCCTGTCCTGATGTCCAAGTCAGTGCCACCTTCACCAGAGAAGATCTTAAATGGCAAAGGAATTCTGCCAACCACCATAGACAAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26164 NSD1::RNF130 ENSG00000165671.22::ENSG00000113269.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NSD1 ENSG00000165671.22 protein_coding + + chr5:177131830-177300213:+ chr5:177212195:+ chr5:176558831-176727214:+ chr5:176639196:+ RNF130 ENSG00000113269.14 protein_coding - + chr5:179911651-180072113:- chr5:180028118:+ chr5:179338651-179499113:- chr5:179455118:+ chr5:177249144,chr5:177249132,chr5:177249146,chr5:177249147,chr5:177249150,chr5:177249119,chr5:177249154,chr5:177249164,chr5:177249166,chr5:177249175,chr5:177249176,chr5:177249178,chr5:177249163,chr5:177249181,chr5:177249152,chr5:177249122,chr5:177249130,chr5:177249143 chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814,chr5:180027814 NA NA chr5:176676145,chr5:176676133,chr5:176676147,chr5:176676148,chr5:176676151,chr5:176676120,chr5:176676155,chr5:176676165,chr5:176676167,chr5:176676176,chr5:176676177,chr5:176676179,chr5:176676164,chr5:176676182,chr5:176676153,chr5:176676123,chr5:176676131,chr5:176676144 chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814,chr5:179454814 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none PWWP_domain(50%)| PWWP(70%)| 4 1 4 515 1 ENST00000508896.7 unknown downstream upstream duplicates(1) GTAAAATTTCTGAAAAAGGACTCTCTTTTGAAAACGGAAAAGGCCCAGAGCTGGACTCTGTAATGAACAGTGAGAATGATGAACTCAATGGTGTAAATCAA...GGGGCGGGATGAGTTTCCAGAGCATAGAACTCCTTCAGCAAGCATACTTGAGGAACCACTGACAGAGCAAAATCATGCTGACTGCTTAGATTCAGCTGGGCCACGGTTAAATGTTTGTGATAAATCCAGTGCCAGCATTGGTGACATGGAAAAGGAGCCAGGAATTCCCAGTTTGACACCACAGGCTGAGCTCCCTGAACCAG|ATCCTTCACTTACAAGGGGCCTTTGGCCTAGAATACTCTTCTCAACTCCTCAACTCCGACTCGGATGCTGTTTCCTCAAGGCATTCCTCTCTGACCCCTTGGACCTAAGTCACTTCCCACAGTCATGACTTCGTACTCAATGTTCATCTTCTCTGCTTGTTATAACTCCATGGAAAGAGGCACCATGTGTGTCTTGTTTATGCTTGGAGCTCTAACAAGAGTTCAAAAAACAATTAGCATATAGAATCCAACgCCCT GRDEFPEHRTPSASILEEPLTEQNHADCLDSAGPRLNVCDKSSASIGDMEKEPGIPSLTPQAELPEP|dpsltrglwprilfstpqlrlgccflkaflsdpldlshfpqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor binding SET domain protein 1 1 AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26165 CTC-338M12.4::LINC00964 ENSG00000233937.9::ENSG00000249816.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4401 TRUE 1666 CTC-338M12.4 ENSG00000233937.9 lncRNA + + chr5:181246466-181272167:+ chr5:181247386:+ chr5:180673466-180699168:+ chr5:180674386:+ LINC00964 ENSG00000249816.8 lncRNA + + chr8:124823702-124962531:+ chr8:124849745:+ chr8:125835944-125974773:+ chr8:125861987:+ chr5:181254910,chr5:181254908 chr8:124834523,chr8:124834518 NA NA chr5:180681910,chr5:180681908 chr8:125846765,chr8:125846760 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 1 1 7 259 21 ENST00000511331.5 ENST00000666508.1 downstream upstream duplicates(1),mismatches(1) GCCGGACCTGCCGGCCTCTTCCTTCTCATCCAGGGGGCCTCTTCTCCAGCCTCACGGAGGTGGGAAGCTTGCTGGAGGCCCCTACCTGCCTTTTGGGGAAGACCCCGAGGCTGGCCCACGCCCTGCTGGCAGGACCCTTCCTGACTGGGTCCACCGTTCTTCTGGGTCTCACCACTTCTCCCAGCCCCTGGGCTGCTTCCTCTCTCCCGTGTCTGGGACCCCAGAGGCACCACTTCCATTCCATACAAG|TGCTGCGATTACCGACGTGAGCCACTGTGCCCAGCCTCACTTTAAAAAAA...CTTTGCTCAgCACAACCACCCAGTGAAGCAGGCAAGACAACAGAAACTCCCCACCTGTGATAGATGTGAGGCCTGAAGTCTCCCACATACCCACGGCAGATGCAACGCACAGCGGTGACCAATG___GTGAAGGATCTAAAACCTGAAAAGAGGCCAAATGATTCCTCAAAACCACGCAAGTACGAAGTAGCAGAGCGGATCTCAAATCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26166 CTC-338M12.4::LINC00964 ENSG00000233937.9::ENSG00000249816.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2408 TRUE 4401 TRUE 1666 CTC-338M12.4 ENSG00000233937.9 lncRNA + + chr5:181246466-181272167:+ chr5:181247386:+ chr5:180673466-180699168:+ chr5:180674386:+ LINC00964 ENSG00000249816.8 lncRNA + + chr8:124823702-124962531:+ chr8:124849275:+ chr8:125835944-125974773:+ chr8:125861517:+ chr5:181254910,chr5:181254908 chr8:124834523,chr8:124834518 NA NA chr5:180681910,chr5:180681908 chr8:125846765,chr8:125846760 NA NA sense sense unknown exon/splice-site exon/splice-site translocation high none none none 0 1 7 259 13 ENST00000511331.5 ENST00000657752.1 downstream upstream mismatches(2) GCCTCACGGAGGTGGGAAGCTTGCTGGAGGCCCCTACCTGCCTTTTGGGGAAGACCCCGAGGCTGGCCCACGCCCTGCTGGCAGGACCCTTCCTGACTGGGTCCACCGTTCTTCTGGGTCTCACCACTTCTCCCAGCCCCTGGGCTGCTTCCTCTCTCCCGTGTCTGGGACCCCAGAGGCACCACTTCCATTCCATACAAG|ATGCTGGCCTGGGTGCTGGAATATGGAAATGAGGAAGATCCTGCCTGAGGATTTCATGACAG___TGCTGCGATTACCGACGTGAGCCACTGgtCCCAaCCcCcCTTTAAAAAAAAAAAAAGGTTATGAAGCATCTCAACACAAGACCTCCTTTGCTCATCACAACCACCCAGTGAAGCAGGC...TACCCACGGCAGATGCAACGCACAGCGGTGACCAATG___GACATGGTCCAAGCAGACCCTTTCCTGAGACTTTCTAAATGGAGCTGTGTGAGAAGAGTTCCTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26168 PDCD1LG2::TPGS2 ENSG00000197646.8::ENSG00000134779.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2410 FALSE NA FALSE NA PDCD1LG2 ENSG00000197646.8 protein_coding + + chr9:5510531-5571282:+ chr9:5535050:+ chr9:5510531-5571282:+ chr9:5535050:+ TPGS2 ENSG00000134779.15 protein_coding - - chr18:36777647-36829216:- chr18:36800311:- chr18:34357610-34409179:- chr18:34380274:- chr9:5543862,chr9:5543859 chr18:36801056,chr18:36801059 NA NA chr9:5543862,chr9:5543859 chr18:34381019,chr18:34381022 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Immunoglobulin_domain(100%)| Ig_3(100%)| 0 6 2 32 883 ENST00000397747.5 ENST00000614939.4 downstream downstream mismatches(1) GAAAGAGCCACTTTGCTGGAGGAGCAGCTGCCCCTAGGGAAGGCCTCGTTCCACATACCTCAAGTCCAAGTGAGGGACGAAGGACAGTACCAATGCATAATCATCTATGGGGTCGCCTGGGACTACAAGTACCTGACTCTGAAAGTCAAAG|CCAGTGATGATCAGCCAGAGAAGCCTCACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGAAACCAG___CATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATC...GCATtTATAAACCTATCACCTACAACACAAcCCTGCTCACAGAAGAGACCGACTCCTTTGTGAATAAGCTAGATCCCAGCAAAGTGTTTAAGAGCAAGAAC...AAAGGGCCCTCAGGACCCTCCGGTCCCTCCACTTCCTCCACTTCTAAATCCTCCTCTGGCTCTGGAAACCCCACCCGGAAGTGAGCACCCCTCCCTCCAAC ERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVK|aSDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRALYWHFLTDTFTAYYRLL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE programmed cell death 1 ligand 2 1 Yes PMBL, Hodgkin lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26169 TIAM1::LTN1 ENSG00000156299.15::ENSG00000198862.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TIAM1 ENSG00000156299.15 protein_coding - - chr21:31118416-31559977:- chr21:31223406:- chr21:32490734-32932290:- chr21:32595722:- LTN1 ENSG00000198862.14 protein_coding - + chr21:28928144-28992956:- chr21:28982638:+ chr21:30300466-30365277:- chr21:30354960:+ chr21:31223128,chr21:31223131 chr21:28980060,chr21:28980057 NA NA chr21:32595444,chr21:32595447 chr21:30352382,chr21:30352379 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none PH_domain(47%),T-lymphoma_invasion_and_metastasis_CC-Ex_domain(95%)| PH(76%),PH_9(100%),Tiam_CC_Ex(29%)| 2 1 4 88 4 ENST00000286827.7 unknown upstream upstream duplicates(3),mismappers(1) TGAAATCAGAGATCAAAAAACTGGAACAGAAGATTGACATGGATGAAAAGATGAAGAAAATGGGTGAAATGCAGCTGTCTTCAGTCACTGACTCAAAGAAAAAGAAAACAATATTAGATCAG___ATCTTTGTCTGGGAGCAAAATCTCGAGCAGTTCCAAATGGACCTGTTTCGTTTCCGCTGTTATTTAGCCAGCCTTCAGGGTGGGGAGCTGCCAAACCCCAAAAGGCTTCTCGCTTTTGCAAGTCGACCAACGAAAGTGGCCATGGGCCGCCTTGGAATCTTTTCGGTATCATCGTTTCATGCCCTG|CAATGAAGTGAATGTGAATCTGGGAGATAAATTAGGCTCTGCTTTCCTCTCCCCTCTTTCTGTAAGCCTGCTTGCCCACAAAGAACACCATACATTGTGCTCTGCTCCATCACAGAGGAAG___AAAAACACGCTTGGTACACCTGAGAAATGAAGA KSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQGGELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHAL|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26177 ZNF235::ENSG00000268746 ENSG00000159917.17::ENSG00000268746.1 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF235 ENSG00000159917.17 protein_coding - - chr19:44228729-44305046:- chr19:44298820:- chr19:44732882-44809199:- chr19:44802973:- ENSG00000268746 ENSG00000268746.1 lncRNA + + chr19:47607524-47733098:+ chr19:47713202:+ chr19:48110781-48236355:+ chr19:48216459:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site intron inversion high none KRAB_box(100%)| KRAB(39%)| 1 1 4 47 19 ENST00000650576.1 unknown upstream upstream duplicates(3),mismatches(2) CTGAGGAGGAGCTGGGGCTGCTGGACTCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTTAGGAACCTGGTTTCAGTGG___GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAG|AAGAGAGACAGACTGGGGAGCAGCCCAACGCTGGAGGTGGAGGCGGAATTCGAACCCCAGGCTGGACGCTGGAGCTCTCGCCCGCCGTGCTAAGGCGTCTTCCCCACTCCCCACAAGGGGGCGCCAGAGGCCGGGCGCCCGGTTTTGAGGGGGGCGCCTCGTCCCGCCCCTCCCTCCTGTCCTCCCTCCC EEELGLLDSAQRKLYRDVMLENFRNLVSVGHQSFKPDMISQLEREEKLWMKELQTQR|eerqtgeqpnagggggirtpgwtlelspavlrrlphspqggargrapgfeggassrpsllssl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26178 ZNF790::IGFL4 ENSG00000197863.9::ENSG00000204869.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4403 TRUE 1667 ZNF790 ENSG00000197863.9 protein_coding - - chr19:36817428-36850787:- chr19:36850002:- chr19:37308330-37341689:- chr19:37340904:- IGFL4 ENSG00000204869.9 protein_coding - - chr19:46039182-46077118:- chr19:46066197:- chr19:46542440-46580376:- chr19:46569455:- chr19:36844244 chr19:46066564 NA NA chr19:37335146 chr19:46569822 NA NA sense sense unknown 5'UTR/splice-site intron duplication high none |Insulin_growth_factor-like_family(100%) |IGFL(100%) 0 3 2 19 8 ENST00000614179.4 unknown upstream downstream none CTGGCCGCAGTGACCAGACTAACTGTGCCCCGGAGGCTGCTTGGAATTCCACTTAACGCTGGAAGCACGCAGACGCTCTTGAGGCGGGCAGCTGCGTAGCGTGTGGAGGAGCCGGGAGAGCGCACCCCAATGTGGCACCTGAGCGTCTGGGACCGAACCAGCATGGGGAGTCGGAAGGGGACAAATCCGCGATCCCAGTCATGCAT|CTGGATTCCTTGATATATGGTGTCAAGATGTTTAAAGATCTTTGGCATCAGGCTTTCAAGAAGATGGTAGGTGCTGGCTCCCTGTGGCTTTACAAGCTCACGCTTCACCAGAAATCAAGAGAAAAAATCACCTGGCTGAGAGGGCCATGCTGAGCTAAGTTCCACTTTCAGCCTTAAGGGTCTCTCAGGGGCTACTTTGATGGGATTCTTTGGTTCTCACTTACTTTGCTTCATGGCCGTTTTGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26179 ZNF790::IGFL4 ENSG00000197863.9::ENSG00000204869.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4403 TRUE 1667 ZNF790 ENSG00000197863.9 protein_coding - - chr19:36817428-36850787:- chr19:36850700:- chr19:37308330-37341689:- chr19:37341602:- IGFL4 ENSG00000204869.9 protein_coding - - chr19:46039182-46077118:- chr19:46060293:- chr19:46542440-46580376:- chr19:46563551:- chr19:36844244 chr19:46066564 NA NA chr19:37335146 chr19:46569822 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication medium none |Insulin_growth_factor-like_family(100%) |IGFL(100%) 0 4 0 13 12 ENST00000613249.4 ENST00000596694.1 upstream downstream duplicates(1) GACAGGTTGCCGAAAGCTACAGCCCAGCCATCCCGATTCCCCTGGCGCGGACTCTGGCACCAACAAAACTATCTCTTTGAG|AGTCAAGGAAACTTTTCTTTTGAGCTACTGACAGCTTAACTCCTGTGAACAAAATTTGGAGCATATTTGTTTCTCTCTGCCTGATTTCTCCAAAATTTGGAAACTATTTGTGAG...AAGAATGTCACTTTCTGATTGGCCCAGGAGCCCCAGGTTATCTTGGGACCTCAAGAGGAGAGGAATTTACCCAACTCAGGTATTTGAGGGTGCAAACTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26180 ZNF790::IGFL4 ENSG00000197863.9::ENSG00000204869.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4403 TRUE 1667 ZNF790 ENSG00000197863.9 protein_coding - - chr19:36817428-36850787:- chr19:36850002:- chr19:37308330-37341689:- chr19:37340904:- IGFL4 ENSG00000204869.9 protein_coding - - chr19:46039182-46077118:- chr19:46060293:- chr19:46542440-46580376:- chr19:46563551:- chr19:36844244 chr19:46066564 NA NA chr19:37335146 chr19:46569822 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |Insulin_growth_factor-like_family(100%) |IGFL(100%) 1 0 0 19 12 ENST00000614179.4 ENST00000596694.1 upstream downstream mismatches(1) GCCGGGGATAGATGGGCCCAACTAAAGTGTGCTGCGTTCTCTGGGTCCTGAGGCGGCAGTCTGGCCGCAGTGACCAGACTAACTGTGCCCCGGAGGCTGCT...GACCGAACCAGCATGGGGAGTCGGAAGGGGACAAATCCGCGATCCCAGTCATGCAT|AGTCAAGGAAACTTTTCTTTTGAGCTACTGACAGCTTAACTCCTGTGAACAAAATTTGGAGCATATTTGTTTCTC...AAGgCAATAAAAGCCCCTTGGGAAACCTGGgCTCATGCCTTGTCTACACAGTCCCTGTtCAGGGTTCCCGgCCTGgtGTAAGTAAAGAATGTCACTTTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26182 MTBP::GIN1 ENSG00000172167.8::ENSG00000145723.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTBP ENSG00000172167.8 protein_coding + + chr8:120445400-120542133:+ chr8:120470937:+ chr8:121457640-121554373:+ chr8:121483177:+ GIN1 ENSG00000145723.17 protein_coding - + chr5:103086000-103120138:- chr5:103107452:+ chr5:102421704-102455842:- chr5:102443156:+ chr8:120478422,chr8:120478423 chr5:103099786,chr5:103099775 NA NA chr8:121490662,chr8:121490663 chr5:102435490,chr5:102435479 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none MDM2-binding(42%)| MTBP_N(100%),MTBP_mid(22%)| 2 1 2 193 4 ENST00000305949.6 unknown downstream upstream duplicates(2) AAAGGATAAGAATATTTTcCCAAAG___GTTTTCCATTATTATGGCCCTGCTTTAGAATTTGTGCAGATGATAAAATTATCAGATCTACCCTCCTGCTATATGT...GCAGATTTCTTCTCTGTGTAGCAAG___GTTGGTGCTCTTTTTGTATTGCCATGTACCATTAGTAACATACTGATTCCACCTCCCAACCAACTCAGTTCAAGAAAATGGAAGGAATATATAGCTAAAAAGCCTAAAACAATCAGTG|GAGGACACCTGAGAAGAATCTGCAGCTAGGAAGTAACCAGGGTATGAAGCGAATCACCATCTACCTTTCCAATGTGAATGGGCTAGCAATTCAAACTCCAAA...AATATGAGTAAGCCAACTGATGAGTGGAACACTCCTTATTTTTTAGAATTAGAAGATAAGCAACCTAAGAGCAGGAACCTTATCTATGTTATTCATCAATG QISSLCSKVGALFVLPCTISNILIPPPNQLSSRKWKEYIAKKPKTIS|gghlrrics* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26183 URB1::KMT2C ENSG00000142207.7::ENSG00000055609.21 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA URB1 ENSG00000142207.7 protein_coding - - chr21:32311018-32393012:- chr21:32372507:- chr21:33683329-33765321:- chr21:33744816:- KMT2C ENSG00000055609.21 protein_coding - - chr7:152134922-152436644:- chr7:152273867:- chr7:151832007-152133729:- chr7:151970952:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Ribosome_60S_biogenesis_N-terminal(81%)|F/Y-rich_N-terminus(100%),F/Y_rich_C-terminus(100%),PHD-finger(100%),PHD-like_zinc-binding_domain(59%),PHD-zinc-finger_like_domain(100%),SET_domain(100%) Npa1(76%)|FYRC(100%),FYRN(100%),PHD(100%),SET(100%),zf-HC5HC2H(1%),zf-HC5HC2H_2(1%) 0 2 3 202 67 ENST00000382751.4 ENST00000262189.11 upstream downstream duplicates(2),mismatches(3) CAGTTATTGAACCACATAGCATCGCTGTACAACTGGAATGGGATTACCGATGTGAACCCAGAAAATGTCAAG___GTTTCTGCCGAAGAAGCAGGGAAAACCATGGTGCGGGAGCTTGTTCATAACTTCCTGATGGATCTTTGCTGTTCACTCAAGCATGGAATTAATTTTTACGATGCATCTTTGGGTACCTTTGGCAG|CGATGTGCATTTTGTAAGCACtTTGGAGCCACTATCAAATGCTGTGAAGAGAAATGTACCCAGATGTATCATTATCCTTGTGCTGCAGGAGCCGGCtCCTTTCAGGATTTCAGTCACATCTTCCTGCTTTGTCCAGAACACATTGACCAAGCTCCTGAAAGAT___CGAAGGAAGATGCAAACTGTGCAGTGTGCGACAGCCCG QLLNHIASLYNWNGITDVNPENVKVSAEEAGKTMVRELVHNFLMDLCCSLKHGINFYDASLGTFGs|dvhfvstleplsnavkrnvprciiilvlqepapfrisvtsscfvqntltkllkdrrkmqtvqcata NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2C 1 Yes medulloblastoma other TSG nonsense 26184 SIPA1L3::POU2F2 ENSG00000105738.11::ENSG00000028277.22 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37932692:+ chr19:38397848-38699009:+ chr19:38423332:+ POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42160392:- chr19:42590262-42700737:- chr19:42664544:- chr19:37949010 chr19:42179845 NA NA chr19:38439650 chr19:42683997 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%) |Homeodomain(100%),POU2F1_C(100%),Pou(100%) 2 3 0 37 7 ENST00000476317.2 ENST00000636631.1 downstream downstream none CTGAGGTCGGCCTGGAGAGCCAAGGCAGGTGGCCTCGCCCTGGGAGGACCAGGGACAGGAGGAGTCCACCTGGGGCTCCCCTGACAGCCACCTGCCCACTTTGTGATCAGAGCCGTGTTCGGGGAGTCTTTCAG|GTTCTCGACTGGACCGGGTTGGTGGCCTGAATGTATTAGCTTCGCTGCGTCTGCCCAAGAG___AAATAAGAATGTCTAAGCCCCTGGAGGCCGAGAAGCAAGGTCTGGACTCCCCATCAGAGCACACAG___ACACCGAAAGAAATGGACCAGACACTAATCATCAG___AACCCCCAAAATAAGACCTCCCC...CCCAACTGGCCCCAGTACAAAG___ATCAAGGCTGAAGACCCCAGTGGCGATTCAGCCCCAGCAGCACCCCTGCCCCCTCAGCCGGCCCAGCCTCATCTGCCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-4323 chr19:42133445-42133513:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26188 EYA1::ZFPM2-AS1 ENSG00000104313.20::ENSG00000251003.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4405 TRUE 1668 EYA1 ENSG00000104313.20 protein_coding - - chr8:71197433-71592025:- chr8:71244603:- chr8:72109668-72504260:- chr8:72156838:- ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105585833:- chr8:106558317-107072752:- chr8:106598061:- chr8:71218545,chr8:71218552 chr8:105594711,chr8:105594715 NA NA chr8:72130780,chr8:72130787 chr8:106606939,chr8:106606943 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 3 1 0 14 1 ENST00000645793.1 ENST00000647695.1 upstream downstream duplicates(1),mismappers(1) CTGATCGATTGCGTCGAGGTTCAGATGGGAAATCACGTGGACGGGGCCGAAGAAACAATAATCCTTCACCTCCCCCAGATTCTGATCTTGAG___AGAGTGTTC...CTGGGACTTGGATGAGACAATCATTGTTTTCCACTCCTTGCTTACTGGGTCCTACGCCAACAGATATGGGAGG___GATCCACCCACTTCAGTTTCCCTTGGACTGCGAATGGAAGAAATGATTTTCAACTTGGCAGACACACATTTATTTTTTAATGACTTAGAA|ACAGAGTCTTGCTCTAGATGTCTCCAAGACTGGAGTGCAACGGCATGATCGTAGCTCACTGCAACCTCAAACTCCTGGGGTCAAGCAATCCTCCCACATGTTAGGTACTATATTACTATACTATATTTCCTCTATTTATAACTAATAATATTATTGCTA WDLDETIIVFHSLLTGSYANRYGRDPPTSVSLGLRMEEMIFNLADTHLFFNDLE|tescsrclqdwsata* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26189 EYA1::ZFPM2-AS1 ENSG00000104313.20::ENSG00000251003.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4405 TRUE 1668 EYA1 ENSG00000104313.20 protein_coding - - chr8:71197433-71592025:- chr8:71269740:- chr8:72109668-72504260:- chr8:72181975:- ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105585833:- chr8:106558317-107072752:- chr8:106598061:- chr8:71218545,chr8:71218552 chr8:105594711,chr8:105594715 NA NA chr8:72130780,chr8:72130787 chr8:106606939,chr8:106606943 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none none none 1 0 0 17 1 ENST00000645793.1 ENST00000647695.1 upstream downstream none AAAGATTCAGATTCTGATCGATTGCGTCGAGGTTCAGATGGGAAATCACGTGGACGGGGCCGAAGAAACAATAATCCTTCACCTCCCCCAGATTCTGATCT...TTGGATGAGACAATCATTGTTTTCCACTCCTTGCTTACTGGGTCCTACGCCAACAGATATGGGAGG|ACAGAGTCTTGCTCTAGATGTCTCCAAGACTGGAG LDETIIVFHSLLTGSYANRYGR|tescsrclqdw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26190 TMEM232::KCNN2 ENSG00000186952.15::ENSG00000080709.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM232 ENSG00000186952.15 protein_coding - - chr5:110289233-110738956:- chr5:110734903:- chr5:109624934-110074657:- chr5:110070604:- KCNN2 ENSG00000080709.17 protein_coding + - chr5:114055926-114496500:+ chr5:114213774:- chr5:113391623-113832197:+ chr5:113549471:- chr5:110721089,chr5:110721101 chr5:114226347,chr5:114226356 NA NA chr5:110056790,chr5:110056802 chr5:113562044,chr5:113562053 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 2 0 2 14 4 ENST00000515278.6 unknown upstream downstream duplicates(1),mismappers(1) ACGGTTGCTAGGGAGACGCGGCGGTAACCTGGACCTTAAAAGTTTGTTGTCGTTAGGGAATAGGTGGGAATATGGTTGTGGGATTAATGAAACACAGTACCAAAGAGATTCCAGAAAG...TGGGAGGAGTTCAAAGATGCTTCTTGGAGGGAGCCGATAACCCGCGGGTGGAGCCTACCCG___AGACAGGGCATCACTGTGTTGCCAAGGCTGGTCTTGAACTGGCTCAAGCAATCTGCCCACCTCGGTCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGCGCCCTGCCTG|GAATAATGAAAGCTACCATGGAGACAAAGAGAAATCCTTAAAACTTTCAAAGACAGCAAGACCAACGGCAATAATAAGACAAATTGCATGCAATGGACTGAAGATCATAACAACAGACTTAGCCATTGCTGGGAATGAAAAAGAAAG[a]AAAAAAAATGCTTTCAATAGTTTGAAGGAAATAGATTTTTT...TAAATGTGAGGGTAACATAAAGACATTTCAGGAATGCAAATTATAAAATCACAAAAACAAAACAAAAACCACTCATAAACTCTTTCTTGACAATTTATTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26191 ASAP1::LINC00534 ENSG00000153317.15::ENSG00000253394.7 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4406 TRUE 1669 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90508559:+ chr8:91233569-91700091:+ chr8:91520787:+ chr8:130265692,chr8:130265695 chr8:90487784,chr8:90487781 NA NA chr8:131277938,chr8:131277941 chr8:91500012,chr8:91500009 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 0 2 2 71 2 ENST00000518721.6 ENST00000655219.1 upstream upstream duplicates(1) AGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG___GATGCCGGACCAGATCTCTGTCTCGGAGTTCATCGCCGAGACCACCGAGGACTACAACTCGCCCACCACGTCCAGCTTC...CACGCGGCTGCACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|GATAATTATTATGTGAACACAGAAGAAGGGTGCCTAACGTAATCTGGAAATACCACAGAAGACTTCCTGAAAGAAGTGTCTTGGCCTGAGTCTCGAAGAATGAGCAGTTATTAATTAAATGAG___ATGATGGAGACATTGAAG...AACATTTCTGCTCATCAGTGTTTTGCA___GATGAATTAGCTGCCCTGCTTCCAAGCATAACAAGAAAT___GTAGGAGATAAAAACTATCATGTGGAAGATGCCC TRLHNCRNTVTLLEE|dnyyvnteegclt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26192 ASAP1::LINC00534 ENSG00000153317.15::ENSG00000253394.7 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4406 TRUE 1669 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90539338:+ chr8:91233569-91700091:+ chr8:91551566:+ chr8:130265692,chr8:130265695 chr8:90487784,chr8:90487781 NA NA chr8:131277938,chr8:131277941 chr8:91500012,chr8:91500009 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 0 1 2 71 2 ENST00000518721.6 ENST00000671657.1 upstream upstream duplicates(2) AGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG___GATGCCGGACCAGATCTCTGTCTCGGAGTTCATCGCCGAGACCACCGAGGACTACAACTCGCCCACCACGTCCAGCTTC...CGCGGCTGCACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|ATTGTTCCTGTAGAGACAATAGATGCTGTAATGCAGAAATTGAGAGACGGTATCAAT...ACAGAAAATGTTTACAGGTAATTTAAGAGACTCATTATCATTTGAAAAATTTTCTGATCCTCTTAGCACCCAACATACACTAGTATTTTTCAATATATAGC RLHNCRNTVTLLEE|ivpvetidavmqklrdgi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26193 ASAP1::LINC00534 ENSG00000153317.15::ENSG00000253394.7 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4406 TRUE 1669 ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130358017:- chr8:131064350-131455920:- chr8:131370263:- LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90582504:+ chr8:91233569-91700091:+ chr8:91594732:+ chr8:130265692,chr8:130265695 chr8:90487784,chr8:90487781 NA NA chr8:131277938,chr8:131277941 chr8:91500012,chr8:91500009 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none BAR_domain_of_APPL_family(3%)| BAR(0%),BAR_3(0%)| 1 0 1 71 2 ENST00000518721.6 ENST00000653734.1 upstream upstream duplicates(1) CGGGCCCGCGCCTCCCGCCCAGCCGGCGCTTCCCGGTCGCAGTTCGCTTTCCCACCCGAGAGCCGCGAGCGCCCGGCCGAACCCGCGATGGAATAATtCCC...AGGCTCTCCAGTTTTTCGTCGAGAGATTCACTATGGAATCG___GATGCCGGACCAGATCTCTGTCTCGGAGTTCATCGCCGAGACCcaCGAGGACTACAACTC...CACAACTGCAGGAACACCGTCACGCTGCTGGAGGAG|GCTGCTGCCACAATCATCATTGAGATTTCCTGTCAAGGCATTTGCCACCATTAGCCCTCTTCTTC HNCRNTVTLLEE|aaatiiieiscqgichh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26194 ENSG00000289497::MAN2A1 ENSG00000289497.2::ENSG00000112893.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000289497 ENSG00000289497.2 lncRNA - - chr5:115364197-115415268:- chr5:115415079:- chr5:114699894-114750965:- chr5:114750776:- MAN2A1 ENSG00000112893.10 protein_coding + + chr5:109689927-109869625:+ chr5:109817273:+ chr5:109025628-109205326:+ chr5:109152974:+ chr5:115413721,chr5:115413783,chr5:115413787 chr5:109804377,chr5:109804341,chr5:109804337 NA NA chr5:114749418,chr5:114749480,chr5:114749484 chr5:109140078,chr5:109140042,chr5:109140038 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Glycosyl_hydrolases_family_38_C-terminal_domain(100%) |Glyco_hydro_38C(100%) 1 1 1 5 170 ENST00000691850.2 ENST00000261483.5 upstream upstream none GAATGAGCATGCAGACCCACTGAGTTGACTGGCAAAGCTTTACTATGGATAACCACAGATGCAACCGCATGCTGTGTCTTTAGGAAAATGGGAGCAAGTGGATTGTGTCAGATGTCCAAATG|GTACCTTGTGGTCTATAATCCTTTAGAACAAGACCGAATCTCGTTGGTCTCAGTCTATGTGAGTTCCCCGACAGTGCAAGTGTTCTCTGCTTCAGGAAAACCTGTGGAAGTTCAAGTCAGCGCAGTTTGGGATACAGCAAATACTATTTCAGAAACAcCCTATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26197 FAM53A::LETM1 ENSG00000174137.14::ENSG00000168924.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM53A ENSG00000174137.14 protein_coding - - chr4:1617915-1684313:- chr4:1668667:- chr4:1619642-1686040:- chr4:1670394:- LETM1 ENSG00000168924.15 protein_coding - - chr4:1811479-1856156:- chr4:1841797:- chr4:1813206-1857883:- chr4:1843524:- chr4:1663355 chr4:1848953 NA NA chr4:1665082 chr4:1850680 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Family_of_FAM53(8%)|LETM1-like__RBD(100%) FAM53(0%)|EF-hand_8(100%),LETM1(100%) 0 2 1 11 149 ENST00000308132.11 ENST00000302787.3 upstream downstream none CGCGCTCAG___GCACAAATCCTGAAGAGCCCGTGGGCGTGGACTGCTCATCTGTAAAGAAAGTGGAGACATGACCTTGAGATTTGGCTGACCCAGCAATGCTG...AGAAGCTGCAGAGCCAGAGCCTGGACGACCTCACCTGCAAGGCGGAGGCTGGCCCG|GAATGTTCCATTTGGCTGCTGCACTCCCATCCACCCTGTGTACACATCCTCCAGAGGCGATCACCTCGGCTGTTGGGCTCTGAGGCCCGAGTGCCTTCGCATAGTGTCGAGAGCGCCATGGACCTCTACCTCTGTGGGTTTTGTGGCTGTGGGACCTCAGTGCCTTCCTGTGCGTGGCTGGCACTCTTCGCGCCCTGTTCGCGATGACTCGGTAGTAGAGAAGTCCCTCAAGTCCTTGAAGGACAAGAACAAGAAGCTGGA...GTGGTGGTGAAGAAGTCCCTGGGGCAGCGGGTGCTGGACGAGCTGAAGCACTACTACCATGGCTTCCGCCTGCTATGGATCGACACCAAGATCGCGGCACG KLQSQSLDDLTCKAEAGP|ecsiwllhshppcvhilqrrsprllgsearvpshsvesamdlylcgfcgcgtsvpscawlalfapcsr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26201 PVT1::CCDC26 ENSG00000249859.14::ENSG00000229140.12 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128020719:+ chr8:128806772-129199347:+ chr8:129032965:+ CCDC26 ENSG00000229140.12 lncRNA - + chr8:128634199-129683770:- chr8:129314430:+ chr8:129646445-130696016:- chr8:130326676:+ NA NA NA NA NA NA NA NA sense antisense unknown intron intron deletion/5'-5' medium none none none 2 4 18 34 25 unknown unknown downstream upstream duplicates(3),low_entropy(1) GTGAGAAGGAGTTGATGTGCCACTGCTGGCTCTGAAATGTGGGGCCCACTTGTAGGAACTGGAGGGAGAGACTGGTTGCTAACGGTGGCCCCTAGCTAACAGCCAACAGAGAAATGGGGACCGCCGGCCTACAGCTGCAGGGAACTGAATTCAGCAACATGAATAAGTTTGGAAGAGGATCCTTCCAGAACCTCCTGATAGGAGCCCAGTCCGCTGTCACCTTGAATTCAGCTTCATGAACCAGGAGCAGGGAAACCAGCTGAGCCAACCCACATTCTGACCTAAGGAGCACTGAG|CAAAGTGCTGATTAGTGCTGGAACAAGAAAAGTACAAGATGCAATTGGACCATGAACAAGAAGCTACTAACTTCTTTAGAGAAAGCATTCTCACAG___GCCTTCGATGAATTGGACGATGTCCACCCACATGGTGAGGGCAGATCTTTCTTACTCCACCCACCGATGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26217 APP::CHODL ENSG00000142192.22::ENSG00000154645.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APP ENSG00000142192.22 protein_coding - - chr21:25880535-26171128:- chr21:26089943:- chr21:27252846-27543446:- chr21:27462259:- CHODL ENSG00000154645.14 protein_coding + + chr21:17901263-18267373:+ chr21:18248038:+ chr21:19273580-19639690:+ chr21:19620355:+ chr21:26067072,chr21:26067074 chr21:18243130,chr21:18243128 NA NA chr21:27439388,chr21:27439390 chr21:19615447,chr21:19615445 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none Amyloid_A4_N-terminal_heparin-binding(87%)|Lectin_C-type_domain(100%) APP_N(68%)|Lectin_C(100%) 3 1 1 4409 2 ENST00000359726.7 unknown upstream upstream none CCAAAACCTGCATTGATACCAAGGAAGGCATCCTGCAGTATTGCCAAGAA___GTCTACCCTGAACTGCAGATCACCAATGTGGTAGAAGCCAACCAACCAGTGACCATCCAGAACTGGTGCAAGCGGGGCCGCAAGCAGTGCAAGACCCATCCCCACTTTGTGATTCCCTACCGCTGCTTAG|TGTGCATAGCAGTGATCCCCAACCTATTTTTGCTGCAAAATGACATTAGGAATATTTCATGGTGCTTCCAGATTTCTCCAGGACACTTTAATATATATCAGTTTAACTTTATTAAAACTGGCACATGTTTTATTTAGGAGACTGGGTGATTTAG KTCIDTKEGILQYCQEVYPELQITNVVEANQPVTIQNWCKRGRKQCKTHPHFVIPYRCL|vciavipnlfllqndirniswcfqispghfniyqfnfiktgtcfi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26222 OXR1-AS1::PDCD6 ENSG00000253582.1::ENSG00000249915.9 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA OXR1-AS1 ENSG00000253582.1 lncRNA - - chr8:106520474-106657548:- chr8:106522721:- chr8:107532702-107669776:- chr8:107534949:- PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272711:+ chr5:271736-315089:+ chr5:272826:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation medium none |EF-hand_domain_pair(100%),EF_hand(89%) |EF-hand_1(100%),EF-hand_5(7%),EF-hand_6(10%),EF-hand_7(97%),EF-hand_8(100%) 0 1 3 15 1628 ENST00000518591.1 ENST00000618970.4 upstream upstream none GGTTCTGAGGCTTTGCCTGTAGTCCAG___CAATAGAAAACTTATACAGTACTTTCTATGGTCAGTTGTGATCATAAAAAGAGAGTAAGAAGAAAAACAACTCTGAAAGACAAGATTTGGTTTCTCTCTTTCATTGTACACAT|GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG___GCACGTGGACT...GGACGGGGGCAGATcGCCTTCGACGACTTCATCCAGGGCTGCATCGTCCTGCAG___AGGTTGACGGATATATTCAGACGTTACGACACGGATCAGGACGGCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26225 MCC::MAN2A1 ENSG00000171444.19::ENSG00000112893.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCC ENSG00000171444.19 protein_coding - - chr5:113022106-113488823:- chr5:113143218:- chr5:112357803-112824520:- chr5:112478915:- MAN2A1 ENSG00000112893.10 protein_coding + + chr5:109689927-109869625:+ chr5:109713520:+ chr5:109025628-109205326:+ chr5:109049221:+ chr5:113132072,chr5:113132074 chr5:109697425,chr5:109697423 NA NA chr5:112467769,chr5:112467771 chr5:109033126,chr5:109033124 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none EF-hand_domain_pair(100%)|Alpha_mannosidase_middle_domain(100%),Glycosyl_hydrolases_family_38_C-terminal_domain(100%),Glycosyl_hydrolases_family_38_N-terminal_domain(100%) EF-hand_5(100%),EF-hand_7(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|Alpha-mann_mid(100%),Glyco_hydro_38C(100%),Glyco_hydro_38N(100%) 3 0 0 39 141 ENST00000511847.2 ENST00000261483.5 upstream upstream duplicates(2) CTCAGATCTGCCTAACTGCGTTGAACAGAGACGAGAGAACAGAGACTTGATGAAATGAGCATCAG___CTCCATTCAGCAGCCCTGGCATCACTAAAGGGAGAT...TCTCCAGCAAACAGAGAGGGAACGGGACCTTCTGGAAAAGAAATTGGCCAAGGCACAG___TGCGAGCAGTCCCACCTCATGAGAGAGCATGAGGATGTCCAGG...GCATCACAGAGCTCCACAGCGTCATTGCGGAGCTCAACAAGAAGATAGACCGTCTGCAAGGCACCACCATCAG|GGCCAGCTCTCAATGTTGCAAGAAAAAATAGACCATTTGGAGCGTTTGCTAGCTGAGAATAATGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26236 MCC::SNTB1 ENSG00000171444.19::ENSG00000172164.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCC ENSG00000171444.19 protein_coding - - chr5:113022106-113488823:- chr5:113384968:- chr5:112357803-112824520:- chr5:112720665:- SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120575225:- chr8:121547985-121825513:- chr8:121587465:- chr5:113344292,chr5:113344294 chr8:120596793,chr8:120596792 NA NA chr5:112679989,chr5:112679991 chr8:121609033,chr8:121609032 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none EF-hand_domain_pair(100%)|PH_domain(60%) EF-hand_5(100%),EF-hand_7(100%),Kinase-like(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%)|MTBP_C(100%),PH(31%) 2 0 0 22 1 ENST00000408903.7 ENST00000395601.7 upstream downstream duplicates(1) GGGACGGATACATCAGCAG___AAATGACTTGCTAATGGTCTGTCGCCAGCTGAATATGGAAGAGTCTGTGGCTGAGATCATGAACCAGTTGGGAGCAGATGAAAATGGGAAGATTTCCTTTCAGGATTTCACAAGATGCCGCATGCAGCTTGTTCGAGAAATTAGGAAGGAG...AAGTCAGACAACTCCTGTACAAAGAAGCTGAGGGATAGAATTGCTTCCTGGCCCACGAGCAGTGACAACAGTTTGG|GTGCCAGGGGAGAGCAAGAAACAGTGGAAACCAGCCCTGGTTGTGCTGACTGAGAAAGACCTTTTAATCTATGACAG KSDNSCTKKLRDRIASWPTSSDNSL|gargeqetvetspgcad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26244 TTC6::FOXA1 ENSG00000139865.17::ENSG00000129514.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ FOXA1 ENSG00000129514.8 protein_coding - - chr14:37589552-37596059:- chr14:37592711:- chr14:38058757-38065264:- chr14:38061916:- chr14:37596163 chr14:37594905 NA NA chr14:38065368 chr14:38064110 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Forkhead_N-terminal_region(94%),Forkhead_domain(100%),HNF3_C-terminal_domain(100%) |Forkhead(100%),Forkhead_N(16%),HNF_C(100%) 18 13 24 51 503 ENST00000553443.6 ENST00000250448.5 downstream downstream duplicates(10),low_entropy(1),mismatches(3) GGGATAACTGACCCCGGGGTCCCTCCCCAGAGGTACACGCCACCTTCCGAGCGCGGGCTGCGGCCCAGTCTCGCGCCCCTCCTGCTCTTTGCTTCCTCCCTCCTGATTCCTGACCCAAAGTTCAACCCCGGGAGACTGGAGAATACAGACTTTTTTTTTTCTTTCCTCCTGAGAGCTTCAGACTAGAAAAGGGAAAAAGCCCCACTTTTGCTTCGTCACTAGAAACCGGGTCATCTGAGTCAGCCGAGCCAAGTGACGTTAGGCCGACCCGGGCCCCGGGCTAGCAGAGCGGAGGCGCTGCCACGAAACTCGTACCTGCGGCTAAGAGCAG|GCCTACTCCTCCGTCCCGGTCAGCAACATGAACTCAGGCCTGGGCTCCATGAACTCCATGAACACCTACATGACCATGAACACCATGACTACGAGCGGCAACATGACCCCGGCGTCCTTCAACATGTCCTATGCCAACCCGGGCCTAGGGGCCGGCCTGAGTCCCGGCGCAGTAGCCGGCATGCCGGGGGGCTCGGCGGGCGCCATGAACAGCATGACTGCGGCCGGCGTGACGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE forkhead box A1 1 Yes breast, prostate epithelial oncogene missense, frameshift 26253 SLC19A1::POFUT2 ENSG00000173638.19::ENSG00000186866.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4415 TRUE 1670 SLC19A1 ENSG00000173638.19 protein_coding - - chr21:45493572-45573365:- chr21:45514896:- chr21:46913486-46993279:- chr21:46934810:- POFUT2 ENSG00000186866.17 protein_coding - - chr21:45263928-45287898:- chr21:45285928:- chr21:46683843-46707813:- chr21:46705843:- NA NA NA NA NA NA NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion/read-through low none Reduced_folate_carrier(100%)|GDP-fucose_protein_O-fucosyltransferase(100%) Folate_carrier(100%)|O-FucT(100%) 1 2 2 111 125 ENST00000460174.1 ENST00000331343.11 upstream downstream duplicates(4) GGAAAAGCCATCTCAGGTTGGCGGCAGACACATTGTCATCAGAGGGGAGCAGCGGCTCTGGTCCTCGGAGCTGGTTCCTCTCTCCCACCCTAAGGGCAGCCCTCCATGGTCCTGTCTGTCCTTCTGA...GTCCTCAGCTGCTCCCACACTgGTGCCAGCCCGGAGGGGACTGGTCCCGGTCACCGtGGACGTGCTGGCCTTG|GTATCTTCTGTATGACGTCAACCCCCCGGAAGGCTTCAACCTGCGCAGGGATGTCTATATCCGAATCGCCTCTCTCCTGAAGACTCTGCTGAAGACGGAGGAGTGGGTGCTTGTCCTGCCTCCATGGGGCCGCCTCTATCACTG...CACGCcGGGAGGCgGTGGTTGtTTAACTGGGGCCAGGCAGTCATTTCTAAGGTAGACATCAGGTTGGGCTTgCGATTGCATCCAGCCTCACCAGCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26254 SLC19A1::POFUT2 ENSG00000173638.19::ENSG00000186866.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4415 TRUE 1670 SLC19A1 ENSG00000173638.19 protein_coding - - chr21:45493572-45573365:- chr21:45525817:- chr21:46913486-46993279:- chr21:46945731:- POFUT2 ENSG00000186866.17 protein_coding - - chr21:45263928-45287898:- chr21:45285928:- chr21:46683843-46707813:- chr21:46705843:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Reduced_folate_carrier(99%)|GDP-fucose_protein_O-fucosyltransferase(100%) Folate_carrier(55%)|O-FucT(100%) 2 1 1 157 125 ENST00000650808.1 ENST00000331343.11 upstream downstream mismatches(1) CGTCCTTCGCCGCGGGCTTCGTGAAGATCCGCTGGGCGCGCTGGTCCAAGCTGCTCATCGCGGGCGTCACGGCCACGCAGGCGGGGCTGGgCTTCCTTCTGGCGCACACGCGCCACCCGAGCAGCATCTGGCTGTGCTATGCGGCCTTCGTGCTGTTCCGCGGCTCCTACCAGTTCCTCGTGCCCATCGCC...GGGGTCAACACGTTCTTTGCCACCATCGTCAAGACCATCATCACTTTCATTGTCTCGGACGTGCGGGGCCTGGGCCTCCCGGTCCGCAAGCAG|GTATCTTCTGTATGACGTCAACCCCCCGGAAGGCTTCAACCTGCGCAGGGATGTCTATATCCGAATCGCCTCTCTCCTGAAGACTCTGCTGAAGACGGAGGAGTGGGTGCT?GTCCTGCCTCCATGGGGCCGCCTCTATCACTG GVNTFFATIVKTIITFIVSDVRGLGLPVRKQ|vssv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26257 APAF1::ANKS1B ENSG00000120868.14::ENSG00000185046.21 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APAF1 ENSG00000120868.14 protein_coding + + chr12:98645290-98735433:+ chr12:98645835:+ chr12:99039068-99129211:+ chr12:99039613:+ ANKS1B ENSG00000185046.21 protein_coding - + chr12:98726457-99984936:- chr12:99031448:+ chr12:99120235-100378714:- chr12:99425226:+ chr12:98647235,chr12:98647236 chr12:98897274,chr12:98897272 NA NA chr12:99041013,chr12:99041014 chr12:99291052,chr12:99291050 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' low none none none 2 0 1 31 3 ENST00000551964.6 unknown downstream upstream none AGCGAGTGGACGTGACTGCTCTATCCCGGGCAAAAGGGATAGAACCAGAGGTGGGGAGTCTGGGCAGTCGGCGACCCGCGAAGACTTGAGGTGCCGCAGCG...CAGAGATCCAGGGGAGGCGCCTGTGAGGCCCGGACCTGCCCCGGGtCGAAGGGTATGTGGCGAGACAGAGCCCTGCACCCCTAATTCCCGGTGGAAAACTCCTGTTGCCGTTTCCCTCCACCGGCCTGGAGTCTCCCAGTCTTGTCCCGGCAGTGCCGCCCTCCCCACTAAGACCTAGGCGCAAAGGCTTGG|AGCCTGGAAAAAGCTAAGACACACTTTCCCAGTCTCCTGCAAGTTGGACGGTGGCTGTGTGACATGGTCTGGCCAATGAGGTGTAAACCTGAGTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26274 GOSR1::MBTD1 ENSG00000108587.16::ENSG00000011258.16 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2414 FALSE NA FALSE NA GOSR1 ENSG00000108587.16 protein_coding + + chr17:30477362-30527592:+ chr17:30492753:+ chr17:28804380-28854610:+ chr17:28819771:+ MBTD1 ENSG00000011258.16 protein_coding - - chr17:51177425-51260163:- chr17:51180694:- chr17:49254786-49337524:- chr17:49258055:- chr17:30503125,chr17:30503124 chr17:51184913,chr17:51184914 NA NA chr17:28830143,chr17:28830142 chr17:49262274,chr17:49262275 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Snare_region_anchored_in_the_vesicle_membrane_C-terminus(17%)| V-SNARE_C(0%)| 300 75 300 1710 1024 ENST00000225724.9 ENST00000586178.6 downstream downstream duplicates(69),low_entropy(15),mismatches(11) CCTTGAATGCAGCCCTGATGCATACATTACAGCGGCATAGAGACATATTGCAG___GATTATACACATGAATTCCATAAAACCAAAGCAAACTTTATGGCAATACGGGAAAGGGAGAATCTTATGGGATCAGTACGAAAAGATATTGA___GTCATATAAAAGTGGGTCTGGAGTAAACAACAGAAGAACTGAGCTATTTTTGAAAGAACATGACCACCTTCGAAA|TGACAACACTGCAGCTGAAGGAGGAGTTGCTGGATGGAGAGGATTATAATTTCCTTCAAGGAGCGTCTGATCAGGAAAGCAATGGCTCTGCCAACTTCTACATCAAACAAGAGCCATGAGGTGGCTTAGAAACTGAGGGCGGGTGGGGAAGGATTTTACACAGGACTGATTTATAATCAATCCAGCTGTACAGGGGGCTACTCTACTGGGACATTTTGCTAAACATAGAAGATTTCAGT LNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRn|dntaaeggvagwrgl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26275 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230714321:- chr1:230826522-230881322:- chr1:230850067:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site 5'UTR deletion high none |Serpin_(serine_protease_inhibitor)(100%) |DUF3510(100%),Serpin(100%) 45 47 179 463 164 ENST00000366503.3 ENST00000680783.1 upstream downstream duplicates(11),mismatches(17) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|CAGTGAAACTCTGCATCGATCACTAAGACTTCCTGGAAGAGGTCCCAGCGTGAGTGTCGCTTCTGGCATCTGTCCTTCTGGCCAGCCTGTGGTCTGGCCAAGTGATGTAACCCTCCTCTCCAGCCTGTGCACAGGCAGCCTGGGAACAGCTCCATCCCCACCCCTCAGCTATAAATAGGGCATCGTGACCCGGCCGGGGGAAGAAGCTGCCGTTGTTCTGGGTACTACAGCAGAAG___GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGT M|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26276 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230710853:- chr1:230826522-230881322:- chr1:230846599:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site deletion high none |Serpin_(serine_protease_inhibitor)(100%) |DUF3510(100%),Serpin(100%) 12 19 72 463 307 ENST00000366503.3 ENST00000681269.1 upstream downstream duplicates(1),low_entropy(1),mismatches(10) GCGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGTGTGAGCCTGAGGGCCACCATCCTCTGCCTCCTGGCCTGGGCTGGCCTGGCTGCAGGTGACCGGGTGTACATACACCCCTTCCACCTCGTCATCCACAATGAGAGTACCTGTGAGCAGCTGGCAAAGGCCAATGCCGGGAAGCCCAAAGACCCCACCTTCATACCTGCTCCAATTCAGGCCAAGACATCCCCTGTGGATGAAAAGGCCCTACAGGACCAGCTGGTGCTAGTCGCTGCA M|gmrkrapqseMAPAGVSLRATILCLLAWAGLAAGDRVYIHPFHLVIHNESTCEQLAKANAGKPKDPTFIPAPIQAKTSPVDEKALQDQLVLVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26277 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2415 TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230706200:- chr1:230826522-230881322:- chr1:230841946:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Serpin_(serine_protease_inhibitor)(52%) |DUF3510(100%),Serpin(73%) 8 3 12 463 292 ENST00000366503.3 ENST00000681269.1 upstream downstream mismatches(2) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGAAGATGAAGGGCTTCTCCCTGCTGGCCGAGCCCCAGGAGTTCTGGGTGGACAACAGCACCTCAGTGTCTGTTCCCATGCTCTCTGGCATGGGCACCTTCCAGCACTGGAGTGACATCCAGGACAACTTCTCGGTGACTCAAGTGCCCTTCACTGAGAGCGCCTGCCTGCTGCTGATCCAGCCTCACTATGCCTCTGACCTGGACAAGGTGGAGGGTCTCACTTTCCAGCAAAACTCCC M|gr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26278 ZNF670-ZNF695::AGT ENSG00000135747.11::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4417 TRUE 1672 ZNF670-ZNF695 ENSG00000135747.11 protein_coding - - chr1:246945547-247078811:- chr1:247078594:- chr1:247108849-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230714321:- chr1:230826522-230881322:- chr1:230850067:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site 5'UTR deletion high none |Serpin_(serine_protease_inhibitor)(100%) |DUF3510(100%),Serpin(100%) 45 47 179 463 164 ENST00000474541.1 ENST00000680783.1 upstream downstream duplicates(11),mismatches(17) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|CAGTGAAACTCTGCATCGATCACTAAGACTTCCTGGAAGAGGTCCCAGCGTGAGTGTCGCTTCTGGCATCTGTCCTTCTGGCCAGCCTGTGGTCTGGCCAAGTGATGTAACCCTCCTCTCCAGCCTGTGCACAGGCAGCCTGGGAACAGCTCCATCCCCACCCCTCAGCTATAAATAGGGCATCGTGACCCGGCCGGGGGAAGAAGCTGCCGTTGTTCTGGGTACTACAGCAGAAG___GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGT M|q* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26279 ZNF670-ZNF695::AGT ENSG00000135747.11::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4417 TRUE 1672 ZNF670-ZNF695 ENSG00000135747.11 protein_coding - - chr1:246945547-247078811:- chr1:247078594:- chr1:247108849-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230710853:- chr1:230826522-230881322:- chr1:230846599:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense in-frame CDS/splice-site 5'UTR/splice-site deletion high none |Serpin_(serine_protease_inhibitor)(100%) |DUF3510(100%),Serpin(100%) 12 19 72 463 307 ENST00000474541.1 ENST00000681269.1 upstream downstream duplicates(1),low_entropy(1),mismatches(10) GCGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGTGTGAGCCTGAGGGCCACCATCCTCTGCCTCCTGGCCTGGGCTGGCCTGGCTGCAGGTGACCGGGTGTACATACACCCCTTCCACCTCGTCATCCACAATGAGAGTACCTGTGAGCAGCTGGCAAAGGCCAATGCCGGGAAGCCCAAAGACCCCACCTTCATACCTGCTCCAATTCAGGCCAAGACATCCCCTGTGGATGAAAAGGCCCTACAGGACCAGCTGGTGCTAGTCGCTGCA M|gmrkrapqseMAPAGVSLRATILCLLAWAGLAAGDRVYIHPFHLVIHNESTCEQLAKANAGKPKDPTFIPAPIQAKTSPVDEKALQDQLVLVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26280 ZNF670-ZNF695::AGT ENSG00000135747.11::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4417 TRUE 1672 ZNF670-ZNF695 ENSG00000135747.11 protein_coding - - chr1:246945547-247078811:- chr1:247078594:- chr1:247108849-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230706200:- chr1:230826522-230881322:- chr1:230841946:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Serpin_(serine_protease_inhibitor)(52%) |DUF3510(100%),Serpin(73%) 8 3 12 463 292 ENST00000474541.1 ENST00000681269.1 upstream downstream mismatches(2) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGAAGATGAAGGGCTTCTCCCTGCTGGCCGAGCCCCAGGAGTTCTGGGTGGACAACAGCACCTCAGTGTCTGTTCCCATGCTCTCTGGCATGGGCACCTTCCAGCACTGGAGTGACATCCAGGACAACTTCTCGGTGACTCAAGTGCCCTTCACTGAGAGCGCCTGCCTGCTGCTGATCCAGCCTCACTATGCCTCTGACCTGGACAAGGTGGAGGGTCTCACTTTCCAGCAAAACTCCC M|gr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26281 ZNF526::LIPE-AS1 ENSG00000167625.12::ENSG00000213904.11 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF526 ENSG00000167625.12 protein_coding + + chr19:42220292-42228201:+ chr19:42220387:+ chr19:42724444-42732353:+ chr19:42724539:+ LIPE-AS1 ENSG00000213904.11 lncRNA + - chr19:42397114-42652367:+ chr19:42443060:- chr19:42901266-43156519:+ chr19:42947212:- chr19:42221540 chr19:42445985 NA NA chr19:42725692 chr19:42950137 NA NA sense antisense unknown 5'UTR/splice-site intron inversion/3'-3' high none none none 20 199 2 110 792 ENST00000710326.1 unknown downstream downstream duplicates(65),inconsistently_clipped(1),mismatches(4) TGAGGGGTCCCACACGCCTGGAGCCGAGGGTCTGTGTCAAGAGCGGCAGGGGCTGCAGGAGATAAGAGAAACGG|TTTCACCTCCCAGATTCCCATAAAGCACATGGTCTAATCTGTTACGTAACAGCAAGACAGCGTCACCTCACCTGTTCTCGCCCTCAAATGGGAACGCTGGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26282 MTMR1::CABIN1 ENSG00000063601.17::ENSG00000099991.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MTMR1 ENSG00000063601.17 protein_coding + + chrX:150692971-150765108:+ chrX:150737448:+ chrX:149861444-149933581:+ chrX:149905920:+ CABIN1 ENSG00000099991.18 protein_coding + + chr22:24011192-24178628:+ chr22:24035444:+ chr22:24407642-24574596:+ chr22:24431892:+ chrX:150742966,chrX:150742967 chr22:24027547,chr22:24027545 NA NA chrX:149911438,chrX:149911439 chr22:24423995,chr22:24423993 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none GRAM_domain(100%),Myotubularin-like_phosphatase_domain(80%)|MEF2_binding(100%) GRAM(100%),Myotub-related(35%)|MEF2_binding(100%) 66 58 82 777 389 ENST00000485376.5 ENST00000263119.10 downstream upstream duplicates(3),mismatches(3) GCTGGAATATATAAGG___ATGCTGCTTGCTGGGGCAGTAAGAATTGCTGATAAAATAGAATCTGGGAAAACATCTGTGGTGGTGCATTGCAGCGACGGTTGGGACCGAACAGCCCAGCTCACATCTCTGGCTATGCTAATGTTGGACAGTTACTACAGGACCATTAAAGGATTTGAAACTCTCGTAGAAAAGGAGTGGATAAGCTTTGGACACAGGTTTGCACTG|GAGAGTTGTGGACTGGGGCAACCTTTGCCAGTGATGAGAAGTGATGCTCGTGGCAGTGCTGAATCTCTCTGAATATG___ATTCGAATTGCAGCCTTAAATGCCAGCTCCACCATTGAGGATGATCATGAAGGAAGCTTTAAAAGTCACAAAACCCAGACAAAGGAGGCTCAG___GAAGCAGAGGCTTTTGCATTGTACCACAAGGCCCTTGATCTGCAGAAACATGACCGGTTTGAGGAGTCTGCCAAAGCCTACCATGAG LEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAMLMLDSYYRTIKGFETLVEKEWISFGHRFAL|escglgqplpvmrsdargsaesl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26283 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2416 TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |EAP30/Vps36_family(65%) |EAP30(46%) 62 67 77 171 4048 ENST00000264658.11 ENST00000576353.5 upstream downstream duplicates(9),mismatches(14) CGAGCTAGCGACGAGCAGTCGTTGCGGCCGCCGGCGCCGCGGGAGGTGGTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|CTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGGGACTTCTATTACGAACTAGGTGTCCAAATTATCGAAGTGTGCCTGGCGCTGAAGCATCGGAATGGAG___GTCTGATAACTTTGGAGGAACTACATCAACAGGTGTTGAAGGGAAGGGGCAAGTTCGCCCAGGATGTCAGT MRRDVNGVTKSRFE|LEKDFGLRCWAWGTSITN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26284 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2417 TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |EAP30/Vps36_family(65%) |EAP30(46%) 23 121 13 120 4048 ENST00000577399.5 ENST00000576353.5 upstream downstream duplicates(7),mismatches(6) CCGCGGAGG?GCGGCGGCAGCCGCACTGCCCCAATCTAGACACATCCAGAAGAGGAGGAAAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|CTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGGGACTTCTATTACGAACTAGGTGTCCAAATTATCGAAGTGTGCCTGGCGCTGAAGCATCGGAATGGAG___GTCTGATAACTTTGGAGGAACTACATCAACAGGTGTTGAAGGGAAGGGGCAAGTTCGCCCAGGATGTCAGTCA___AGATGACCTGATCAGAGCCAT MAPSRDRLLHFGFKAT|LEKDFGLRCWAWGTSITN* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26285 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401666:- chr17:37408916-37558776:- chr17:37557919:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |EAP30/Vps36_family(65%) |EAP30(46%) 0 1 14 0 4048 ENST00000647139.1 ENST00000502492.6 upstream downstream duplicates(2),mismatches(4) GGCGGCTCTGTCCAATGAGCAGCGGCGTTGCTGGCAG|CTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGGGACTTCTATTACGAACTAGGTGTCCAAATTATCGAAGTGTGCCTGGCGCTGAAGCATCGGAATGGAG___GTCTGATAACTTTGGAGGAACTACATCAACAGGTGTTGAAGGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26286 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48931717:- chr17:47006678-47022204:- chr17:47009079:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |EAP30/Vps36_family(16%) |EAP30(8%) 1 2 6 171 4527 ENST00000264658.11 ENST00000502492.6 upstream downstream none GCCGGCGCCGCGGGAGGTGGTGGAGGCCTAGCCGGAGCCGAGAGGTCTCTTGTTCCCGTCCCACGGTCCCGGCGTCACCCCTCCGGCGCCCAGTCCCCGTCCCGGAACTCCCGGGCCTGTCCTGGGCCCCCGGTCTGTGCACTCCGCTCGCCGCAGCGCCCGGCCCGGGCCGCACCCGCCGGCCCCATGAGGAGGGACGTGAACGGAGTGACCAAGAGCAGGTTTGAG|AAGAATGGCTACGTGACTGTCAGTGAGATCAAAGCCAGTCTTAAATGGGAGACCGAGCGAGCGCGGCAAGTGCTG___GAACACCTGCTGAAGGAAGGGTTGGCGTGGCTGGACTTACAGGCCCCAGGGGAGGCCCACTACTGGCTGCCAGCTCTCTTCACTGACCTCTACTCCCAGGAGATTACAGCTGAGGAGGCCAGAGAAGCCCTCCCCTGACTGCATGTGGAAGGGCACACAGCAGCAGGCAGGGAGGAGGCG MRRDVNGVTKSRFE|KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26287 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48931717:- chr17:47006678-47022204:- chr17:47009079:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none |EAP30/Vps36_family(16%) |EAP30(8%) 0 1 1 120 4527 ENST00000577399.5 ENST00000502492.6 upstream downstream none CCCCGGCCCCCCAGGCCTCCCTGCAGCACCCCGTAATGTAATGCACTGGGGCGGGGGAGGCGGGGGAGGCGGCGGCGGCGGCAACCGCGGAGGCG...GAAAATGGCTCCGAGCAGGGACCGCCTGCTGCcCTTTGGGTTCAAGGCGACA|AAGAATGGCTACGTGACTGTCAGgGAGATCAAAGCCAGTCTTAAATGGG...GAGCGAGCGCGGCAAGTGCTG___GAACACCTGCTGAAGGAAGGGTTGGCGTGGCTGGACTTACAGGCCCCAGGGGAGGCCCACTACTGGCTGCCAGCTCTCTTCACTGACCTCTcCTCCCAGGAGATTACAGCTG MAPSRDRLLpFGFKAT|KNGYVTVrEIKASLKW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26288 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48930612:- chr17:47006678-47022204:- chr17:47007974:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |EAP30/Vps36_family(5%) |EAP30(0%) 0 1 0 120 3069 ENST00000577399.5 ENST00000502492.6 upstream downstream none CTTTGGGTTCAAGGCGACA|GAACACCTGCTGAAGGAAGGGTTGGCGTGGCTGGACTTACAGGCCCCAGGGGAGGCCCACTACTGGCTGCCAGCTCTCTTCA...CTCTACTCCCAGGAGATTACAGCTGAGGAGGCCAGAGAAGCCCTCCCCTGACTGCATGTGGAAGGGCACACAGCAGCAGGCAGGGAGGAGGCGGAGGTGGC FGFKAT|EHLLKEGLAWLDLQAPGEAHYWLPALF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26289 TMEM104::NHERF1 ENSG00000109066.14::ENSG00000109062.12 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2418 TRUE 4419 TRUE 1674 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74795632:+ chr17:72772638-72835892:+ chr17:72791771:+ NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74766936:+ chr17:72744767-72765492:+ chr17:72763075:+ chr17:74809250,chr17:74809245 chr17:74765283,chr17:74765275 NA NA chr17:72805389,chr17:72805384 chr17:72761422,chr17:72761414 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Transmembrane_amino_acid_transporter_protein(34%)|EBP50__C-terminal(85%) Aa_trans(17%)|EBP50_C(8%) 55 73 50 363 5186 ENST00000335464.10 ENST00000262613.10 downstream upstream duplicates(8),mismatches(17) CTCCATGTTCTTCAATAAAG___TGGGGGTCAACTTGTTCTATTTCTGCATCATCGTTTACCTGTATGGAGACCTCGCCATCTATGCTGCTGCCGTGCCCTTCTCCCTCATGCAGGTGACCTG___CAGCGCCACTGGCAATGACTCCTGCGGTGTGGAAGCAGACACCAAATACAATGACACTGACCGGTGCTGGGGGCCCCTGCGCCGAGTGGACGCCTACCGCATCTACTTG|GTCCCCTGCCTGTGCCCTTCACCAATGGGGAGATACAGAAG___GAGAACAGTCGTGAAGCCCTGGCAGAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATCCGCCTCCAGTGACACCAGCGAGGAG___CTGAATTCCCAAGACAGCCCCCCAAAACAGGACTCCACAGCGCCCTCGTCTACCTCCTCCTCCGACCCCATCCTAGACTTCAACATCTCCCTGGCCATGGCCAAAGAGAGGGCCCACCAGAAAC SMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYL|vpclcpspmgryrrrtvvkpwqrqpwrapgqpw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26290 TMEM104::NHERF1 ENSG00000109066.14::ENSG00000109062.12 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4419 TRUE 1674 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74795632:+ chr17:72772638-72835892:+ chr17:72791771:+ NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74768147:+ chr17:72744767-72765492:+ chr17:72764286:+ chr17:74809250,chr17:74809245 chr17:74765283,chr17:74765275 NA NA chr17:72805389,chr17:72805384 chr17:72761422,chr17:72761414 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Transmembrane_amino_acid_transporter_protein(34%)|EBP50__C-terminal(74%) Aa_trans(17%)|EBP50_C(2%) 2 1 31 363 6432 ENST00000335464.10 ENST00000262613.10 downstream upstream mismatches(11) ACTTGTTCTATTTCTGCATCATCGTTTACCTGTATGGAGACCTCGCCATCTATGCTGCTGCCGTGCCCTTCTCCCTCATGCAGGTGACCTG___CAGCGCCACTGGCAATGACTCCTGCGGTGTGGAAGCAGACACCAAATACAATGACACTGACCGGTGCTGGGGGCCCCTGCGCCGAGTGGACGCCTACCGCATCTACTTG|GAGAACAGTCGTGAAGCCCTGGCAGAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATCCGCCTCCAGTGACACCAGCGAGGAG___CTGAATTCCCAAGACAGCCCCCCAAAACAGGACTCCACAGCGCCCTCGTCTACCTCCTCCTCCGACCCCATCCTAGACTTCAACATCTC LFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYL|ENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26293 CSNK1E::TPTEP2-CSNK1E ENSG00000213923.13::ENSG00000283900.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CSNK1E ENSG00000213923.13 protein_coding - - chr22:38290691-38318084:- chr22:38300724:- chr22:38686697-38714089:- chr22:38696729:- TPTEP2-CSNK1E ENSG00000283900.1 protein_coding - + chr22:38291918-38398522:- chr22:38320894:+ chr22:38687924-38794527:- chr22:38716899:+ chr22:38300588,chr22:38300593 chr22:38317317,chr22:38317282 NA NA chr22:38696593,chr22:38696598 chr22:38713322,chr22:38713287 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Protein_kinase_domain(71%)| PK_Tyr_Ser-Thr(87%),Pkinase(94%),Pkinase_fungal(23%)| 62 44 42 2550 148 ENST00000359867.7 unknown upstream upstream duplicates(5),mismatches(9) TTCAACTTCTGTTCCCGCAAATTCAGCCTCAAGACGGTGCTGCTCTTGGCCGACCAGATG___ATCAGCCGCATCGAGTATATCCACTCCAAGAACTTCATCCACCGGGACGTCAAGCCCGACAACTTCCTCATGGGGCTGGGGAAGAAGGGCAACCTGGTCTACATCATCGACTTCGGCCTGGCCgAGAAGTACCGGGACGCCCGCACCCACCAGCACATTCCCTACCGGGAAAACAAGAACCTGACCGGCACGGCCCGCTACGCTTCCATCAACACGCACCTGGGCATTG|ACCCTTCAAGATCACTTGGCACGCAGGAGCACTGGGCTGGGATCCCAAGGACAGCCCTGGAATTCCCAGATAATGACGATATGGCTGCAGATAAACCCAGAAAGATTTCAGTACCTGCCCCAGGAATCTCAGTCTTGACTAAGGACTCATAGATTTACTAAACATCAAGGGCTGGCCTGAAAACGGCCCTCCAGGATCTGTCCTCCAC FNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAeKYRDARTHQHIPYRENKNLTGTARYASINTHLGI|dpsrslgtqehwagiprtalefpdnddmaadkprkisvpapgisvltkds* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Casein kinase I isoform epsilon CK1 CK1 P49674 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26296 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2420 TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49677933:- chr17:47676246-47755525:- chr17:47755295:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 19 71 19 1318 426 ENST00000347630.6 ENST00000617146.5 upstream downstream duplicates(11),low_entropy(1),mismatches(13) GTGCGCGCTCCGAGTGTGTGTGTATTTGTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGACAGTATGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAG|TGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGTGTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGGGAGACGCTGACAGAGCTCAAGG___CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26297 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2421 TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49636759:- chr17:47676246-47755525:- chr17:47714121:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 7 5 33 204 426 ENST00000347630.6 ENST00000617146.5 upstream downstream duplicates(2),mismatches(2),multimappers(1) ATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGACAGTATGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAG___AGATTTCCTGTTAGACAAGACAAATTAGAGTTTTCCTACTGACTTAACTTG|TGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGTGTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGGGAGACGCTGACAGAGCTCAAGG___CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26298 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49668027:- chr17:47676246-47755525:- chr17:47745389:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 2 2 23 107 426 ENST00000509079.6 ENST00000617146.5 upstream downstream duplicates(2),inconsistently_clipped(1),mismatches(2) GCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAG___GCTCTGGGAACCACCCTTCTACTTTCTGTCTCTAGGAATTTCACTACTCTAG|TGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGTGTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGGGAGACGCTGACAGAGCTCAAGG___CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTGGAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26299 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49675895:- chr17:47676246-47755525:- chr17:47753257:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 2 0 21 147 426 ENST00000393328.6 ENST00000617146.5 upstream downstream duplicates(2),mismatches(2) CCGGATGTTGCGGACAGTATGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAG___ATCGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCCACCTTTGCCTCCTGGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG|TGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGTGTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGGGAGACGCTGACAGAGCTCAAGG___CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26300 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49636197:- chr17:47676246-47755525:- chr17:47713559:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none none 0 0 33 2 426 ENST00000508805.5 ENST00000617146.5 upstream downstream duplicates(2),mismappers(1),mismatches(2) CAGGAgGATTGCTTGAGCTCAGGAGTTCGAGACCATCCTGGTCAACATG|TGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGTGTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGGGAGACGCTGACAGAGCTCAAGG___CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26301 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49677933:- chr17:47676246-47755525:- chr17:47755295:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552594:- chr17:36686266-36762205:- chr17:36708830:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none none none 0 2 5 1318 587 ENST00000347630.6 ENST00000617146.5 upstream downstream mismatches(4) CGCGCTCCGAGTGTGTGTGTATTTGTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGACAGTATGAGGCAAGCGCAGGGGGACGGGGACCAGCAGCTGTCGCCGCCGCTCTCAG|CTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTGGATGGGCTCCTCAAGCGCTGCCGCGGGGTCACGGACACGCTGGCCCAGATCCGAAG___GCAAGTGGATGAGGGTGTGTGGCCACCCCCCAACAATCTCCTGAGTCAGTCCCCCAAGAAGGTGACGGCAGAGACTGACTTCAACAAGAGCGTGGACTTCGAAATGCCACCCCCCAGCCCCCCGCTGAAC...TGCAGAGCGAGACTGGGAGGAGAAGCGGGCAGCCCTGACCCAGTACAGTGCCAAGGACATCAACCGGCTGCTGGAAGAGACACAGGCAGAGCTGCTCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26302 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49646926:- chr17:47676246-47755525:- chr17:47724288:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none none none 0 0 0 11 426 ENST00000665825.1 ENST00000617146.5 upstream downstream mismatches(1) GTCACCTTGCCCGGCCAAAAGAACATACTTTCATACTGAGTTGCCACTTGAAAATGAAATTGGAACTGAAAGCTAGAGAATATAAGTATCTTTCTCAG|TGACCTGGAGAAATCGGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 26303 PDCD6::SDHA ENSG00000249915.9::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2422 TRUE 4423 TRUE 1676 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EF-hand_domain_pair(22%),EF_hand(100%)|Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)|Succ_DH_flav_C(12%) 16 36 54 2084 1674 ENST00000618970.4 ENST00000264932.11 downstream upstream duplicates(3),mismatches(6),multimappers(2) TCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 272887|271936 TRUE|FALSE 240473|240473 FALSE|FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26304 PDCD6::SDHA ENSG00000249915.9::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4423 TRUE 1676 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:271821:+ chr5:271736-315089:+ chr5:271936:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EF_hand(10%)|Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)|Succ_DH_flav_C(12%) 2 2 41 1441 1674 ENST00000618970.4 ENST00000264932.11 downstream upstream duplicates(1) CGGCAGAGGCGGAAGCGGAGTCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTC MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|cglmstitpspsrgnrrsplrstggstpcpmwtlalgrslwnidp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 272887|271936 FALSE|TRUE 240473|240473 FALSE|FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26305 PDCD6::SDHA ENSG00000249915.9::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4423 TRUE 1676 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:256334:+ chr5:218418-257197:+ chr5:256449:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none EF-hand_domain_pair(22%),EF_hand(100%)|Fumarate_reductase_flavoprotein_C-term(18%) EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)|Succ_DH_flav_C(0%) 4 1 14 2084 1688 ENST00000618970.4 ENST00000264932.11 downstream upstream duplicates(1),mismatches(1),multimappers(1) TGCAG___...CCGGCCCTGGGCC...GCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGAGTACATTGAAGGGAGATTGGCACCTAGTGGCTGGGAGCTTGCCAGGAACCCAGTGGCCA AGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|ghsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 272887|271936 TRUE|FALSE 240473|240473 FALSE|FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26306 PDCD6-AHRR::SDHA ENSG00000288622.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4424 TRUE 1677 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)|Succ_DH_flav_C(12%) 12 36 37 2084 1674 ENST00000505113.6 ENST00000264932.11 downstream upstream duplicates(3),mismatches(5),multimappers(2) CCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAG MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26307 PDCD6-AHRR::SDHA ENSG00000288622.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4424 TRUE 1677 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:271821:+ chr5:271785-438406:+ chr5:271936:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)|Succ_DH_flav_C(12%) 1 2 26 1441 1674 ENST00000505113.6 ENST00000264932.11 downstream upstream duplicates(1) CTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAG MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|cglmstitpspsrgnrrsplrstggstpcpmwtlalgrslwnidp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26308 PDCD6-AHRR::SDHA ENSG00000288622.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4424 TRUE 1677 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:256334:+ chr5:218418-257197:+ chr5:256449:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Fumarate_reductase_flavoprotein_C-term(18%) EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)|Succ_DH_flav_C(0%) 4 1 11 2084 1688 ENST00000505113.6 ENST00000264932.11 downstream upstream duplicates(1),mismatches(1),multimappers(1) GCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTGGGGAAGAAGGAGTACATTGAAGGGAGATTGGCACCTAG AGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|ghsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26309 PPP1CB::PLB1 ENSG00000213639.11::ENSG00000163803.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2423 FALSE NA FALSE NA PPP1CB ENSG00000213639.11 protein_coding + + chr2:28751640-28802940:+ chr2:28788809:+ chr2:28974506-29025806:+ chr2:29011675:+ PLB1 ENSG00000163803.13 protein_coding + + chr2:28457145-28644142:+ chr2:28628563:+ chr2:28680012-28867008:+ chr2:28851430:+ chr2:28792055,chr2:28792054 chr2:28628124,chr2:28628120 NA NA chr2:29014921,chr2:29014920 chr2:28850991,chr2:28850987 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Calcineurin-like_phosphoesterase(99%),Serine-threonine_protein_phosphatase_N-terminal_domain(100%)|GDSL-like_Lipase/Acylhydrolase(17%) Metallophos(70%),STPPase_N(100%)|Lipase_GDSL(9%) 35 20 29 1268 71 ENST00000395366.3 ENST00000327757.10 downstream upstream low_entropy(2),mismatches(3),multimappers(1) TGGAG___GATTGTCACCAGACCTGCAATCTATGGAGCAGATTCGGAGAATTATGAGACCTACTGATGTCCCTGATACAG___GTTTGCTCTGTGATTTGCTATGGTCTGATCCAGATAAGGATGTGCAAGGCTGGGGAGAAAATGATCGTGGTGTTTCCTTTACTTTTGGAGCTGATGTAGTCAGTAAATTTCTGAATCGTCATGATTTAGATTTGATTTGTCGAGCTCATCAG|GAGGCCCACTTGGCCACGGAATATGTTCAGCACATCCAACAGGCCCTGGACATCCTCTCTGAGGAG___CTCCCAAGGGCTTTCGTCAACGTGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCAGGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCA___GAAC GGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQ|EAHLATEYVQHIQQALDILSEELPRAFVNVVEVMELASLYQGQGGKCAMLAAQ NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Adrenal no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma OVARY,BREAST,STOMACH,BREAST exact 28999848,28975042|28975042,29006844,28975042 FALSE,FALSE|FALSE,FALSE,FALSE 28796064,28804935|28808628,28820872,28785908 FALSE,FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES In-frame,Out-of-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26310 SPDYA::PLB1 ENSG00000163806.16::ENSG00000163803.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SPDYA ENSG00000163806.16 protein_coding + + chr2:28782517-28850611:+ chr2:28788809:+ chr2:29005383-29073477:+ chr2:29011675:+ PLB1 ENSG00000163803.13 protein_coding + + chr2:28457145-28644142:+ chr2:28628563:+ chr2:28680012-28867008:+ chr2:28851430:+ chr2:28792055,chr2:28792054 chr2:28628124,chr2:28628120 NA NA chr2:29014921,chr2:29014920 chr2:28850991,chr2:28850987 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |GDSL-like_Lipase/Acylhydrolase(17%) Metallophos(70%)|Lipase_GDSL(9%) 32 20 24 1268 71 ENST00000462832.5 ENST00000327757.10 downstream upstream low_entropy(2),mismatches(3),multimappers(1) TGGAG___GATTGTCACCAGACCTGCAATCTATGGAGCAGATTCGGAGAATTATGAGACCTACTGATGTCCCTGATACAG___GTTTGCTCTGTGATTTGCTATGGTCTGATCCAGATAAGGATGTGCAAGGCTGGGGAGAAAATGATCGTGGTGTTTCCTTTACTTTTGGAGCTGATGTAGTCAGTAAATTTCTGAATCGTCATGATTTAGATTTGATTTGTCGAGCTCATCAG|GAGGCCCACTTGGCCACGGAATATGTTCAGCACATCCAACAGGCCCTGGACATCCTCTCTGAGGAG___CTCCCAAGGGCTTTCGTCAACGTGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCAGGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCA___GAACAACTGCACTTGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26311 NAP1L1::NAV3 ENSG00000187109.15::ENSG00000067798.16 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2424 FALSE NA FALSE NA NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76084567:- chr12:76430365-76478515:- chr12:76478347:- NAV3 ENSG00000067798.16 protein_coding + + chr12:77324641-78213010:+ chr12:77571859:+ chr12:77718421-78606790:+ chr12:77965639:+ chr12:76079979,chr12:76079968,chr12:76079934,chr12:76079933,chr12:76079974,chr12:76079920,chr12:76076885,chr12:76076910,chr12:76076931,chr12:76076875,chr12:76076871,chr12:76076867,chr12:76076924,chr12:76076914,chr12:76076913,chr12:76076907 chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696 NA NA chr12:76473759,chr12:76473748,chr12:76473714,chr12:76473713,chr12:76473754,chr12:76473700,chr12:76470665,chr12:76470690,chr12:76470711,chr12:76470655,chr12:76470651,chr12:76470647,chr12:76470704,chr12:76470694,chr12:76470693,chr12:76470687 chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site inversion high none |ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),Calponin_homology_(CH)_domain(100%) |AAA(100%),CH(100%) 13 31 30 1334 75 ENST00000618691.5 ENST00000550042.2 upstream upstream duplicates(3),mismatches(1) CTGCTCGCGGCGCCGCCTCCTGCTCCTCCCGCTGCTGCTGCCGCTGCCGCCCTGAGTCACTGCCTGCGCAGCTCCGGCCGCCTGGCTCCCCATACTAGTCGCCG|GTTTACAGGAAATCTGTCATTTTTTATTAAAATGGAAAACTGTGAAGAAAGAAAAAGATAGCAGTTGAAGTCAAAATTCTCGGATGACTATTTTGCTTTTGAGGAGTCAGCATTTAAAAACGATATGCTGATTTGGAAGGTCCTGGGAGTAAACTGCAAACTTTATTTTTTCCATTCAATCAATGGATTTTTTAATCATTCCTTGGAGTCGATGAAGTTCGGAAACGGTGTGTGATGGGGAACGTGGCGGGCCAGTGTGTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26315 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2426 TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76537004:- chr12:76745577-76953589:- chr12:76930784:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76068994:- chr12:76430365-76478515:- chr12:76462774:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Nucleosome_assembly_protein_(NAP)(100%) |ING(100%),NAP(100%) 12 16 20 49 1352 ENST00000393249.6 ENST00000618691.5 upstream downstream duplicates(3),mismatches(3) CGGCTCCTTGCGTCCCGCCTCCCTGGGAGCTCCGCACGG___CAATCTCCATTGGTGCTACTGCGTTTAAAG___AACTGTGGCTAACCTCCAAGAGACTGAAGCTGGTAATT|CAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAACTGGTGAAGAAACAAAACTCAAAG___CACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAG___CCTGCCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26316 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2427 TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76537957:- chr12:76745577-76953589:- chr12:76931737:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76068994:- chr12:76430365-76478515:- chr12:76462774:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |Nucleosome_assembly_protein_(NAP)(100%) |ING(100%),NAP(100%) 2 5 16 44 1352 ENST00000393249.6 ENST00000618691.5 upstream downstream inconsistently_clipped(1),mismatches(2) GTCTGACTAGACGCTTACGGGGCCTCGGACCCCGGCGCCGCGGCGACCTCGGAGGAACCGGCTCCTTGCGTCCCGCCTCCCTGGGAGCTCCGCACGG___CAATCTCCATTGGTGCTACTGCGTTTAAAG|CAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAACTGGTGAAGAAACAAAACTCAAAG___CACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAG___CCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26317 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76559397:- chr12:76745577-76953589:- chr12:76953177:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76067473:- chr12:76430365-76478515:- chr12:76461253:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Nucleosome_assembly_protein_(NAP)(100%) |ING(100%),NAP(100%) 1 0 9 75 1265 ENST00000611266.4 ENST00000618691.5 upstream downstream mismatches(1) GTGGGGGTCCGCCCGGGCTGGTGGACCTCGGGGCCGAAAGTTCCCGCCCCGCTtGGGGGCTGAGCCGGCAGTGCCTCCGCGGCCGCTGGGCAGCGCCCTTCGTCCAGGCTCGCGCCCCAGCTGCCGCCGACGACAGCGGCCGAGAGAAGTTGGGGTCTGACTAGACGCTTACGGGGCCTCGGACCCCGGCGCCGCGGCGACCTCGGAGGAACCGGCTCCTTGCGTCCCGCCTCCCTGGGAGCTCCGCACGG|CACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCAGATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAG___CCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26318 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76559397:- chr12:76745577-76953589:- chr12:76953177:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76060279:- chr12:76430365-76478515:- chr12:76454059:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion medium none |Nucleosome_assembly_protein_(NAP)(100%) |ING(36%),NAP(100%) 0 3 2 75 1300 ENST00000611266.4 ENST00000547704.5 upstream downstream mismatches(1) GTGGGGGTCCGCCCGGGCTGGTGGACCTCGGGGCCGAAAGTTCCCGCCCCGCTtGGGGGCTGAGCCGGCAGTGCCTCCGCGGCCGCTGGGCAGCGCCCTTC...CTGCCGCCGACGACAGCGGCCGAGAGAAGTTGGGGTCTGACTAGACGCTTACGGGGCCTCGGACCCCGGCGCCGCGGCGACCTCGGAGGAACCGGCTCCTTGCGTCCCGCCTCCCTGGGAGCTCCGCACGG|CCTGCCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCAAATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAG___CGATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAAGAAGATGAGATTTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26320 CPSF2::ATXN3 ENSG00000165934.13::ENSG00000066427.25 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPSF2 ENSG00000165934.13 protein_coding + + chr14:92121969-92172145:+ chr14:92138347:+ chr14:92588313-92638489:+ chr14:92604691:+ ATXN3 ENSG00000066427.25 protein_coding - + chr14:92044496-92106621:- chr14:92063231:+ chr14:92510840-92572965:- chr14:92529575:+ chr14:92138549 chr14:92056715 NA NA chr14:92604893 chr14:92523059 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR duplication/5'-5' high none Metallo-beta-lactamase_superfamily_domain(100%)| Lactamase_B(100%),Lactamase_B_6(100%)| 26 7 13 304 43 ENST00000298875.9 unknown downstream upstream mismatches(3) AAAATTCTCTCAGATTGTGAATTTGAAAG___GTAAAGGACATGGCCTGTCTATCACACCTCTGCCAGCTGGTCATATGATAGGTGGAACAATATGGAAAATAGTCAAAGATGGAGAAGAAGAAATTGTTTATGCAGTTGACTTCAACCACAAGAGGGAGAT___CCATTTAAATGGATGTTCCCTGGAAATGCTAAGCAGGCCTTCCCTACTTATCACAGATTCATTCAATGCTACATATGTACAGCCTAGAAGAAAACAGAGAGATGAGCAGCTTCTGA|ATCACCATCTTTGACAAGCTATACCTACTAAAAGATGTGAAGCAGACACCTACATTCCATGACTCAACTGTAAAGAGAACACAAAGCTCCAGTCATAGGAGAAAAAATAAAATAAAAC KFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLL|nhhl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26321 CABIN1::MTM1 ENSG00000099991.18::ENSG00000171100.16 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CABIN1 ENSG00000099991.18 protein_coding + + chr22:24011192-24178628:+ chr22:24041273:+ chr22:24407642-24574596:+ chr22:24437721:+ MTM1 ENSG00000171100.16 protein_coding + - chrX:150568417-150673143:+ chrX:150651653:- chrX:149736867-149841616:+ chrX:149820126:- chr22:24041771 chrX:150652800 NA NA chr22:24438219 chrX:149821273 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 26 12 6 382 104 ENST00000263119.10 unknown downstream downstream duplicates(1),low_entropy(1),mismappers(1),mismatches(2) TGAGCTCTTGGAGGCGAGCCTGCTGCGGGAG___GCAGTTTCATCCGGTGATGAGAAAGAGGGGTTGAAACACCCTGGGCTGATACTGAAATATTCCACTTATAAGAACTTGGCCCAGCTGGCAGCCCAGCGGGAGGATCTGGAGACAGCCATGGAGTTCTACTTAGAG|AAAGCCTGCCTGCTAGACACCACCAGGTGGACGGCCCATCACTACCCCAAATGCATGGTGTTTCTCTTGACCAAGGTCCCAATCAAATCTTATTTTTATTTTGCCTTTCATTTTTTTATGAATTTGTCATCCTCACCAATGAATTtTTAAAAAAAAAAAAAAAAAAAACAACCTAATTGTGACAACTAAATATAATGTGATACCTGGATGGGATCCTTAAACAGAAAAAGGACATTAGGTAAAAGCTAAGG ELLEASLLREAVSSGDEKEGLKHPGLILKYSTYKNLAQLAAQREDLETAMEFYLE|kaclldttrwtahhypkcmvflltkvpiksyfyfafhffmnlssspmnf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26322 ZNF670::ENSG00000244137 ENSG00000277462.2::ENSG00000244137.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4427 FALSE NA ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- ENSG00000244137 ENSG00000244137.1 lncRNA - - chr1:230710698-230795492:- chr1:230710853:- chr1:230846444-230931238:- chr1:230846599:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 12 9 20 463 307 ENST00000366503.3 ENST00000412344.1 upstream downstream low_entropy(1),mismatches(5) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGTGTGAGCCTGAGGGCCACCATCCTCTGCCTCCTGGCCTGGGCTGGCCTGGCTGCAGGTGACCGGGTGTACATACACCCCTTCCACCTCGTCATCCA M|gmrkrapqsemapagvslratilcllawaglaagdrvyihpfhlvi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26324 ZNF670-ZNF695::ENSG00000244137 ENSG00000135747.11::ENSG00000244137.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4428 FALSE NA ZNF670-ZNF695 ENSG00000135747.11 protein_coding - - chr1:246945547-247078811:- chr1:247078594:- chr1:247108849-247242113:- chr1:247241896:- ENSG00000244137 ENSG00000244137.1 lncRNA - - chr1:230710698-230795492:- chr1:230710853:- chr1:230846444-230931238:- chr1:230846599:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none none none 12 9 20 463 307 ENST00000474541.1 ENST00000412344.1 upstream downstream low_entropy(1),mismatches(5) CGCGGCTTTTGTGTTGGGCAGCGCGAATGTGGCGAGCTCGGTGCGTCTCCGCTGCTCCTTCCCCTTATCCCTGGGAGGTCCAAGTGGTCCCGCGGCAGCTTCTGTTGCTCTGGGACCTGCAGGTCCCGGAAGGTCCTTAGGGAGGACCCCAGACACCGGAGACTGGGAAATG|GGTATGCGGAAGCGAGCACCCCAGTCTGAGATGGCTCCTGCCGGTGTGAGCCTGAGGGCCACCATCCTCTGCCTCCTGGCCTGGGCTGGCCTGGCTGCAGGTGACCGGGTGTACATACACCCCTTCCACCTCGTCATCCA M|gmrkrapqsemapagvslratilcllawaglaagdrvyihpfhlvi NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26331 CATSPERG::CARD8 ENSG00000099338.23::ENSG00000105483.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2429 TRUE 4430 TRUE 1679 CATSPERG ENSG00000099338.23 protein_coding + + chr19:38335775-38370943:+ chr19:38344368:+ chr19:38826415-38861583:+ chr19:38835008:+ CARD8 ENSG00000105483.18 protein_coding - - chr19:48180770-48255946:- chr19:48249847:- chr19:48684027-48759203:- chr19:48753104:- chr19:38351998,chr19:38351778 chr19:48252996,chr19:48253372 NA NA chr19:38842638,chr19:38842418 chr19:48756253,chr19:48756629 NA NA sense sense unknown CDS/splice-site 5'UTR/splice-site inversion high none Cation_channel_sperm-associated_protein_subunit_gamma(22%)|Caspase_recruitment_domain(100%),Function_to_find(100%) CATSPERG(20%)|CARD(100%),DUF5575(100%),FIIND(100%) 12 17 8 48 258 ENST00000475646.1 ENST00000651546.1 downstream downstream duplicates(1),mismatches(2) GTTTCAGTGCCCAGGGCCTCCCTGCAGAGCCATGCATGGCAGAAGAAGTGTGTAGCATGAGCTGGTACACGCCCATGCCC...GCAATGGCCTGGGGACCTTCATTCCAGATAAAAG___GTTCCAGATGAATATCAACGGCTTCCTGAAGAGAGACCGGGACAATAACATCCAATTCACTGTGGGAGAGGAG|TGACCAAGAGGAACAGAACACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAAACTCACATG___AGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCTGTGGGCGGTAAACGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26332 CATSPERG::CARD8 ENSG00000099338.23::ENSG00000105483.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4430 TRUE 1679 CATSPERG ENSG00000099338.23 protein_coding + + chr19:38335775-38370943:+ chr19:38344368:+ chr19:38826415-38861583:+ chr19:38835008:+ CARD8 ENSG00000105483.18 protein_coding - - chr19:48180770-48255946:- chr19:48249878:- chr19:48684027-48759203:- chr19:48753135:- chr19:38351998,chr19:38351778 chr19:48252996,chr19:48253372 NA NA chr19:38842638,chr19:38842418 chr19:48756253,chr19:48756629 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Cation_channel_sperm-associated_protein_subunit_gamma(22%)|Caspase_recruitment_domain(100%),Function_to_find(100%) CATSPERG(20%)|CARD(100%),DUF5575(100%),FIIND(100%) 0 1 8 48 20 ENST00000410018.5 ENST00000651546.1 downstream downstream duplicates(1),mismatches(1) CCTGGGGACCTTCATTCCAGATAAAAG___...AGGAGAGGCAGCTACGAGCTG...___GTTCCAGATGAATATCAACGGCTTCCTGAAGAGAGACCGGGACAATAACATCCAATTCACTGTGGGAGAGGAG|CCTCATAGGAACTTCTCCCTTTCTTCTCAAGTGACCAAGAGGAACAGAACACAGAGCAGCCTGGCAGTGTCCAAGCAACAAGCCTCCGCTCCTCCTTCCTGCACCCTGGGGCTCCTGAAACTCACATG___AGAAGGAGGGCTGTCTGAGATTCGAGGGAAACAAGCTCTCAGGACTTCCGGTCGCCATGATGGCTGTGGGCG FQMNINGFLKRDRDNNIQFTVGEE|phrnfslssqvtkrnrtqsslavskqqasappsctlgllklt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26336 NUDT3::ILRUN ENSG00000272325.2::ENSG00000196821.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2431 FALSE NA FALSE NA NUDT3 ENSG00000272325.2 protein_coding - - chr6:34279679-34392669:- chr6:34392264:- chr6:34247456-34360446:- chr6:34360041:- ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34606904:- chr6:34555065-34664636:- chr6:34574681:- chr6:34386044,chr6:34386047 chr6:34634862,chr6:34634862 NA NA chr6:34353821,chr6:34353824 chr6:34602639,chr6:34602639 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none NUDIX_domain(10%)|Ig-like_domain_from_next_to_BRCA1_gene(8%) |N_BRCA1_IG(0%) 6 13 3 359 934 ENST00000607016.2 ENST00000374026.7 upstream downstream duplicates(1),low_entropy(4),mismatches(1) CCGCACCGCACCCCCACCCGGGCCCGGAGGATGATGAAGCTCAAGTCGAACCAGACCCGCACCTACGACGGCGACGGCTACAAGAAGCGGGCCGCATGCCTGTGTTTCCGCAGCGAGAGCGAGGAGGAG|ATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGTAACGCAGCAGCTGTCATCTTTTGAAACGGAGTTCAACACACAGCCGCATCGTAAGGTAGAAGGAAACTTCAACCCTTTTGCCTCTCCCCAAAAGAACCGACAATCAGATGAAAACAACTTAAAAGACCCTGGGGGCTCCGAGTTCGACTCGATCAGCAAAAACACATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGAC MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEE|mssg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26337 PHF8::NEBL ENSG00000172943.21::ENSG00000078114.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHF8 ENSG00000172943.21 protein_coding - - chrX:53936676-54048958:- chrX:54011122:- chrX:53963109-54075391:- chrX:54037555:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20899450:- chr10:21068902-21581940:- chr10:21188379:- chrX:54006932,chrX:54006934 chr10:20928673,chr10:20928672 NA NA chrX:54033365,chrX:54033367 chr10:21217602,chr10:21217601 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none JmjC_domain__hydroxylase(81%),PHD-finger(100%)|Nebulin_repeat(89%),Variant_SH3_domain(100%) Cupin_8(39%),JmjC(28%),PHD(100%)|Nebulin(57%),SH3_1(100%),SH3_2(100%),SH3_9(100%) 5 9 7 841 62 ENST00000357988.9 ENST00000675747.1 upstream downstream duplicates(1) CTCAAG___GGTGAAAAGATCTTCTACCTGATCCGCCCAACAAATGCCAATCTGACTCTCTTTGAGTGCTGGAGCAGTTCCTCTAATCAGAATGAGATGTTCTTTGGGGACCAGGTGGACAAGTGCTACAAGTGTTCCGTGAAGCAAGGACAGACACTTTTCATTCCCACAG|CACAGTGAAGAGTCCCTAAGAACATATTACGTGATGGGAAATGAGAAATAACTGCACTGCAAGCCTGATGAAG___GTCTTCTATAAGCCTGTTATTGAAGACTTAAGCATGGAATTGGCCAGAAAATGCACGGAACTCATTAGCGAT___ATCCGTTATAAAGAAGAGTTTAAAAAGTCCAAGGATAAGTGTACATTTGTGACTGACAGTCCTATGCTAAACCATGTAAAAAATATCGGTGCTTTTATTTCTGAG___GCAAA...TTATAAGCGGATGCCAGCCACAATTGACAGTGTTTTTGCAGGAGAAGTTACACAGCTCCAGAGTGAG___GTGGCCTACAAGCAGAAACATGATGCTGCCAAAGG LKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPT|aq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26338 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51860845:- chr8:52730135-52811746:- chr8:52773405:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34007856:+ chr8:33462374-33896622:+ chr8:33865374:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)(44%)| PCMT(0%)| 5 0 14 234 21 ENST00000522514.6 ENST00000523063.5 upstream upstream duplicates(2) CCGTGTTGTTATTGTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAG___GATTAATTTATTTTTGGAAATCAAGTGCAATATTGGAAGC...ATAATGATGACTTAATTGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAG|GAAACTTTTTGGGAAAGTTCCCCAAAACTTTGGGGAACTGTGTTCCCCTGAAGTTTGGAGGGTGAGGAGTGAAAGAGGTTGAGAAGAATGAGCTGGCTGG___GTTGGACATTCAGAG...___ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCC NDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLIL|gnflgkfpktlgncvplkfgg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26339 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51898930:- chr8:52730135-52811746:- chr8:52811490:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34007856:+ chr8:33462374-33896622:+ chr8:33865374:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 5 7 6 219 21 ENST00000544451.2 ENST00000523336.2 upstream upstream duplicates(1),low_entropy(1),mismappers(1) GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATTGTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAG|GAAACTTTTTGGGAAAGTTCCCCAAAACTTTGGGGAACTGTGTTCCCCTGAAGTTTGGAGGGTGAGGAGTGAAAGAGGTTGAGAAGAATGAGCTGGCTGG___GTTGGACATTCAGAG...___ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACgTCC...TAGTAGCTGGGACTACAGGCACACACCACCACACCTGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTTGACCTCATGATCTGCCCACCCCACCCTCCCAAAGTTCTGGGATTACA RLRSPGGSGCSSRGSGPRLSTRRWRPCCYCGGSGVWLLRTPPSPSAWPARRCPRHr|klfgkvpqnfgelcspevwrvrserg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26340 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51898930:- chr8:52730135-52811746:- chr8:52811490:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34034886:+ chr8:33462374-33896622:+ chr8:33892404:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none none none 1 4 0 219 21 ENST00000544451.2 ENST00000523336.2 upstream upstream none GGCGGCTCCGGAGTCCGGGAGGCTCTGGCTGCTCCAGTCGCGGGTCCGGGCCCCGCCTCTCCACTCGGCGGTGGCGTCCGTGTTGTTATTGTGGTGGTAGCGGCGTCTGGCTGCTGCGGACCCCGCCGAGTCCTAGCGCCTGGCCTGCGCGCCGCTGCCCGCGCCACAG|GTTGGACATTCAGAGGTGACAATGGCCAGATCAACCTTG___ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCCACCTCCTGGGTTCAAGTGAATCCCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACACACCACCACACCTGGC RLRSPGGSGCSSRGSGPRLSTRRWRPCCYCGGSGVWLLRTPPSPSAWPARRCPRHr|ldiqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26341 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51860845:- chr8:52730135-52811746:- chr8:52773405:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34034886:+ chr8:33462374-33896622:+ chr8:33892404:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)(44%)| PCMT(0%)| 1 0 3 234 21 ENST00000360540.9 ENST00000523063.5 upstream upstream none TGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGgGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACA...CTTACAAAGACTTAGCCTGGAAGCATGGAAACATCCACTTGTCAGCACCTTGCATTTATTCTGAAGTTATGGAAGCATTGAAACTTCAACCAGGATTGTCTTTTCTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAG|GTTGGACATTCAGAGGTGACAATGGCCAGATCAACCTTG___ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCCACCTCCTGGGTTCAAGTGAAT YKDLAWKHGNIHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLIL|gwtfrgdngqinldgvlfchqagvqwcdlsslqppppgfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26342 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51860861:- chr8:52730135-52811746:- chr8:52773421:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34038363:+ chr8:33462374-33896622:+ chr8:33895881:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)(41%)| PCMT(0%)| 1 1 1 206 50 ENST00000521344.1 ENST00000523063.5 upstream upstream none TGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGTGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACAATGCTTACAAAGACTTAGCCTGGAAGCATGGA...CGGATATTTAAGTACAATG|ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAACCTCCACCTCCTGGGTTCAAGTGAATCCCCTGCCTCAGCCTCCCTAGTAGCTGG GYLSTM|mescsvtrlecsgaisahynlhllgssespasaslva NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26343 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51860845:- chr8:52730135-52811746:- chr8:52773405:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34038363:+ chr8:33462374-33896622:+ chr8:33895881:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none Protein-L-isoaspartate(D-aspartate)_O-methyltransferase_(PCMT)(44%)| PCMT(0%)| 0 0 1 234 50 ENST00000360540.9 ENST00000523063.5 upstream upstream mismappers(1) TGATAATTTAAAAGAAGCTCAGTATATTCGTACTGAAAGAGgGGAGCAAGCCTTCAGAGCGATTGATCGTGGAGATTACTATTTGGAAGGCTACAGAGACA...CTTAACCTGGGAAGTGGAACCGGATATTTAAGTACAATGGTGGGCTTAATTTTAG|ATGGAGTCTTGTTCTGTCACCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTACAcCCTCCACCTCCTGGGTTCAAGTGAATCCCCTGCCTCAGCCTCCCTAGTAGCTGG LNLGSGTGYLSTMVGLIL|dgvlfchqagvqwcdlsslhppppgfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26344 FYCO1::HRAS ENSG00000163820.16::ENSG00000174775.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4433 TRUE 1681 FYCO1 ENSG00000163820.16 protein_coding - - chr3:45917903-45995824:- chr3:45955249:- chr3:45959395-46037316:- chr3:45996741:- HRAS ENSG00000174775.18 protein_coding - - chr11:532242-537321:- chr11:534375:- chr11:532242-537321:- chr11:534375:- chr3:45940895,chr3:45940900 chr11:534604,chr11:534608 NA NA chr3:45982387,chr3:45982392 chr11:534604,chr11:534608 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none FYVE_zinc_finger(100%),RUN_domain(100%)|Ras_family(100%) FYVE(100%),RUN(100%)|Arf(100%),MMR_HSR1(100%),Ras(100%),Roc(100%) 3 4 11 159 216 ENST00000296137.7 ENST00000462734.2 upstream downstream mismatches(7) TGCACTGTCACCAGCCTCACCTGGGCCCCAGGCCACAGGAGGCCAAG___GAGCAAATACAGACTACAGGCCACCGGACGACGCTGTGTTTGATATCATCACAGATGAGGAATTGTGCCAGATACAGGAGTCCGGCTCCTCTTTGCCTGAAACACCCACTGAAACTGATTCTCTtGACCCAAATGCGGCTGAACA|GTGGGGCAGGAGACCCTGTAGGAGGACCCCGGGCCGCAGGCCCCTGAGGAGCGATGACGGAATATAAGCTGGTGGTGGTGGGCGCCGGCGGTGTGGGCAAGAGTGCGCTGACCATCCAGC ALSPASPGPQATGGQGANTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEq|wgrrpcrrtpgrrplrsddgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ha-ras Harvey rat sarcoma viral oncogene homolog 1 Yes infrequent sarcomas, rare other tumour types rhabdomyosarcoma, ganglioneuroblastoma, bladder Costello syndrome epithelial, leukaemia_lymphoma, mesenchymal oncogene missense 26345 FYCO1::HRAS ENSG00000163820.16::ENSG00000174775.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4433 TRUE 1681 FYCO1 ENSG00000163820.16 protein_coding - - chr3:45917903-45995824:- chr3:45955249:- chr3:45959395-46037316:- chr3:45996741:- HRAS ENSG00000174775.18 protein_coding - - chr11:532242-537321:- chr11:533944:- chr11:532242-537321:- chr11:533944:- chr3:45940895,chr3:45940900 chr11:534604,chr11:534608 NA NA chr3:45982387,chr3:45982392 chr11:534604,chr11:534608 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none FYVE_zinc_finger(100%),RUN_domain(100%)|Ras_family(79%) FYVE(100%),RUN(100%)|Arf(76%),MMR_HSR1(51%),Ras(77%),Roc(52%) 3 0 7 159 621 ENST00000296137.7 ENST00000462734.2 upstream downstream mismatches(2) AATACAGACTACAGGCCACCGGACGACGCTGTGTTTGATATCATCACAGATGAGGAATTGTGCCAGATACAGGAGTCCGGCTCCTCTTTGCCTGAAACACCCACTGAAACTGATTCTCTtGACCCAAATGCGGCTGAACA|GATTCCTACCGGAAGCAGGTGGTCATTGATGGGGAGACGTGCCTGTTGGACATCCTGGATACCGCCGGCCAGGAGGAGTACAGCGCCATGCGGGACCAGTACATGCGCACCGGGGAGGGCTTCCTGTGTGTGTTTGCCATCAACAACACCAAGTCTTTTGAG NTDYRPPDDAVFDIITDEELCQIQESGSSLPETPTETDSLDPNAAEq|iptgsrwslmgrracwtswipparrstapcgtstcapgrascvclpsttpsll NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ha-ras Harvey rat sarcoma viral oncogene homolog 1 Yes infrequent sarcomas, rare other tumour types rhabdomyosarcoma, ganglioneuroblastoma, bladder Costello syndrome epithelial, leukaemia_lymphoma, mesenchymal oncogene missense 26348 GBF1::MRC2 ENSG00000107862.7::ENSG00000011028.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2432 FALSE NA FALSE NA GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102260116:+ chr10:104005128-104142656:+ chr10:104019873:+ MRC2 ENSG00000011028.14 protein_coding + + chr17:62627670-62693597:+ chr17:62664548:+ chr17:60705031-60770958:+ chr17:60741909:+ chr10:102292478,chr10:102292476 chr17:62660267,chr17:62660262 NA NA chr10:104052235,chr10:104052233 chr17:60737628,chr17:60737623 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Fibronectin_type_II_domain(100%),Lectin_C-type_domain(100%) DCB(0%)|Lectin_C(100%),fn2(100%) 2 6 7 216 19 ENST00000676513.1 ENST00000303375.10 downstream upstream mismatches(1) GGAGATTAACATTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACACCACTG___GATGAAGAACGGGATCCTCTGCTGCATAGTTTCGGTCATCTAAAGGAGGTTTTAAACAGTATAACAG|AACCCAACGTCTTCCTCATCTTCAGCCATGGACTGCAGGGCTGCCTGGAGGCCCAGGGCGGGCAGGTCAGAGTCACCCCGGCTTGCAATACCAGCCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGAAACCGGCTATTCAACCTGGGTACCATGCAGTGCCTGGGCACAGGCTGGCCAGGCACCAACACCACGGCCTCCCTGGGCATGTATGAGTGTGACCGGGAAGCACTGAATCTTCGCTGGCATTGTCGTACACTGGGTGACCAG EINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSIT|ePNVFLIFSHGLQGCLEAQGGQVRVTPACNTSLPAQRWKWVSRNRLFNLGTMQCLGTGWPGTNTTASLGMYECDREALNLRWHCRTLGD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26350 TRIOBP::GGA1 ENSG00000100106.22::ENSG00000100083.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4434 TRUE 1682 TRIOBP ENSG00000100106.22 protein_coding + + chr22:37697048-37776556:+ chr22:37751828:+ chr22:38093055-38172563:+ chr22:38147835:+ GGA1 ENSG00000100083.19 protein_coding + + chr22:37608725-37633564:+ chr22:37630903:+ chr22:38004732-38029571:+ chr22:38026910:+ chr22:37753803,chr22:37753802 chr22:37630210,chr22:37630206 NA NA chr22:38149810,chr22:38149809 chr22:38026217,chr22:38026213 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none PH_domain(12%)|Adaptin_C-terminal_domain(100%) PH(1%)|Alpha_adaptinC2(100%) 3 10 2 238 597 ENST00000403663.6 ENST00000343632.9 downstream upstream duplicates(1) CCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGTCCACGTTCCTGCCTCCTGCTCCCGCCGCCCTGGGGCGCCGCCATGACG___CCCGATCTGCTCAACTTCAAGAAGGGATGGATGTCGATCTTGGACGAGCCTGGAGAG|GGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAG APRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKGWMSILDEPGE|geaaanppahtpgpae* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26351 TRIOBP::GGA1 ENSG00000100106.22::ENSG00000100083.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4434 TRUE 1682 TRIOBP ENSG00000100106.22 protein_coding + + chr22:37697048-37776556:+ chr22:37751828:+ chr22:38093055-38172563:+ chr22:38147835:+ GGA1 ENSG00000100083.19 protein_coding + + chr22:37608725-37633564:+ chr22:37631996:+ chr22:38004732-38029571:+ chr22:38028003:+ chr22:37753803,chr22:37753802 chr22:37630210,chr22:37630206 NA NA chr22:38149810,chr22:38149809 chr22:38026217,chr22:38026213 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none PH_domain(12%)|Adaptin_C-terminal_domain(100%) PH(1%)|Alpha_adaptinC2(100%) 0 3 1 238 447 ENST00000403663.6 ENST00000343632.9 downstream upstream none CGCGCCGCGGAGCCCGGCCCGAGAGCCGCGTCCACGTTCCTGCCTCCTGCTCCCGCCGCCCTGGGGCGCCGCCATGACG___CCCGATCTGCTCAACTTCAAGAAGGGATGGATGTCGATCTTGGACGAGCCTGGAGAG|GCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCA...GTTCCAGTCAGCTGTCCCCAAG___GTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCA...TGCTTGCCAACCCCCAGAAG___GAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTC APRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKGWMSILDEPGE|atscp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26352 PPP4R1::RAB31 ENSG00000154845.16::ENSG00000168461.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPP4R1 ENSG00000154845.16 protein_coding - - chr18:9546791-9615240:- chr18:9570157:- chr18:9546789-9615238:- chr18:9570155:- RAB31 ENSG00000168461.13 protein_coding + - chr18:9708275-9862551:+ chr18:9837993:- chr18:9708272-9862548:+ chr18:9837990:- chr18:9564368,chr18:9564373 chr18:9838502,chr18:9838504 NA NA chr18:9564366,chr18:9564371 chr18:9838499,chr18:9838501 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none HEAT_repeat(100%),Putative_WW-binding_domain_and_destruction_box_(100%)| HEAT(100%),WRNPLPNID(100%)| 8 1 4 321 11 ENST00000400555.7 unknown upstream downstream duplicates(2),mismatches(1) GCTCTTTACTTTGTACTTTGTCCTCAGAATCTCACCAGGAAGCAGCTAGTAATGAGAATGATAAAAAACCTGGTAACTACAAATCTATGTTACGACCAGAGGTTGGCACCACTTCACAAGATTCAGCTCTCTTAGATCAGGAATTGTATAACTCCTTCCATTTCTGGAGGACTCCTCTTCCTGAAATAGATCTAGACATAGAGCTTGAACAGAACTCTGGGGGAAAACCCAGCCCAGAGGGACCAGAGGAAGAATCTGAGGGCCCTGTGCCCAGTTCTCCAAACATCACCATGGCCACCAGAAAGGAACTGGAAGAAATGATAGAAAATCTAGAGCCCCACATTGATGATCCAGATGTTAAAG|AATGCCAAAAAGACTGAGGAAATGATGCGAGTAGAAGAAACAAGTAAAGGCCCTTTGTAGTGTTATCCAACTCAACCCCTTCATTTTATGCCCAGGAGAGCTCCCGGTCCAATTATCAACATTCCATAGAAGCATGAGGGGAGCACAGGCCAGATCAGC...ACTTGACAAGTATATTAATGTTCATAAGTCACCCCAAGAGTAGAACTGCATCGTACTTTGAAGTCCTTTCTCAATGAAAAAAATCTGACATTAATTCTGAG SLLCTLSSESHQEAASNENDKKPGNYKSMLRPEVGTTSQDSALLDQELYNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEESEGPVPSSPNITMATRKELEEMIENLEPHIDDPDVK|ecqkd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26353 TMED10::TTLL5 ENSG00000170348.9::ENSG00000119685.20 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMED10 ENSG00000170348.9 protein_coding - - chr14:75131469-75176612:- chr14:75176355:- chr14:75598172-75643315:- chr14:75643058:- TTLL5 ENSG00000119685.20 protein_coding + - chr14:75633625-75955079:+ chr14:75788118:- chr14:76099968-76421422:+ chr14:76254461:- chr14:75167148 chr14:75795566 NA NA chr14:75633851 chr14:76261909 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none emp24/gp25L/p24_family/GOLD(24%)| EMP24_GP25L(0%)| 3 5 5 1399 10 ENST00000303575.9 unknown upstream downstream duplicates(2),mismappers(2) AACGAGTCTCCAGCACCATGTCTGGTTTGTCTGGCCCACCAGCCCGGCGCGGCCCTTTTCCGTTAGCGTTGCTGCTTTTGTTCCTGCTCGGCCCCAGATTGGTCCTTGCCATCTCCTTCCATCTGCCCATTAACTCTCGCAAGTGCCTCCGTGAGGAGATTCACAAGGACCTGCTAGTGACTGGCGCGTACGAGATCTCCGACCAGTCTGGGGGCGCTGGCGGCCTGCGCAGCCACCTCAAG|AGATGGGATCTCGCTATGTTGCCCAGACTGGTCTCGAACTCCTGCGCTCAAGCAATCCTCCCACCTCAGCCTCCTAGGGAGCTTGGACTACAGGTGCACACCAACTATAATTATTTAAGCCAGTAAATTTCCCTTCAAATACTGACTTGCATTGCTCTCTACTTATTTGGACATACAGCTTTTTCATTATCATTCAGTTCTAAAACTTAATAATTTACTTCCATCAGGATTTCTTCTTTGACTCTTAAATTTTGAAATACATGGGGGTTTCTTCTATATCTTTTTGTTACTGACTTTCAACTTAATTGCAATGTGGACA MSGLSGPPARRGPFPLALLLLFLLGPRLVLAISFHLPINSRKCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLK|rwdlamlprlvsnscaqailppqpprelglqvhtnynylsq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26361 ANKRD13B::PCTP ENSG00000198720.13::ENSG00000141179.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4437 TRUE 1683 ANKRD13B ENSG00000198720.13 protein_coding + + chr17:29589769-29614761:+ chr17:29593735:+ chr17:27916787-27941779:+ chr17:27920753:+ PCTP ENSG00000141179.14 protein_coding + + chr17:55751051-55842830:+ chr17:55767335:+ chr17:53828412-53920191:+ chr17:53844696:+ chr17:29600359,chr17:29600360 chr17:55762260,chr17:55762258 NA NA chr17:27927377,chr17:27927378 chr17:53839621,chr17:53839619 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |START_domain(82%) Ank_5(0%),ArfGap(98%)|START(77%) 0 5 4 111 44 ENST00000394859.8 ENST00000573500.5 downstream upstream none CCCGGGCCCCGGCTCCGGCGCCGTCCCTCCTCCCCGGCCGGGCGCCGCGGCCCCGGCATGAGGAGCGGGCGATGATCCCCGCCAACGCCTCCGCCAGGAAGGGGCCCGAGGGCAAGTATCCGCTGCACTACCTCGTGTGGCACAACCGCCACCGCGAGCTGGAGAAGGAGGTCCGCGCGGGCCAG|AAGACTGGACTTTATGAGTATAAAGTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGCAGACATCTATATGGACTCAGATTACAGAAAACAATGGGACCAGTATGTTAAAG___AACTCTATGAACAAGAATGCAACGGAGAGACTGTGGTCTACTGGGAAGTGAAGTACCCTTTTCCCATGTCCAACAGAGAC___TATGTCTACCTTCGGCAGCGGCGAG MIPANASARKGPEGKYPLHYLVWHNRHRELEKEVRAGQ|KTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26362 ANKRD13B::PCTP ENSG00000198720.13::ENSG00000141179.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4437 TRUE 1683 ANKRD13B ENSG00000198720.13 protein_coding + + chr17:29589769-29614761:+ chr17:29589862:+ chr17:27916787-27941779:+ chr17:27916880:+ PCTP ENSG00000141179.14 protein_coding + + chr17:55751051-55842830:+ chr17:55767335:+ chr17:53828412-53920191:+ chr17:53844696:+ chr17:29600359,chr17:29600360 chr17:55762260,chr17:55762258 NA NA chr17:27927377,chr17:27927378 chr17:53839621,chr17:53839619 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion low none |START_domain(82%) ArfGap(63%)|START(77%) 0 2 0 5 44 ENST00000487527.5 ENST00000573500.5 downstream upstream none TCGCCTGGCCCGGAGGCAAT|AAGACTGGACTTTATGAGTATAAAGTCTTTGGTGTTCTGGAGGACTGCTCACCAACTCTACTGGCAGACATCTATATGGACTCAGATTACAGAAAAC...GGTCTACTGGGAAGTGAAGTACCCTTTTCCCATGTCCAACAGAGAC___TATGTCTACCTTCGGCAGCGGCGAGACCTGGACATGGAAGGGAGGAAGATCCATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26365 ZFP90::NFATC3 ENSG00000184939.16::ENSG00000072736.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 2433 FALSE NA FALSE NA ZFP90 ENSG00000184939.16 protein_coding + + chr16:68530090-68576072:+ chr16:68533855:+ chr16:68563993-68609975:+ chr16:68567758:+ NFATC3 ENSG00000072736.19 protein_coding + + chr16:68084751-68229259:+ chr16:68181475:+ chr16:68118654-68263162:+ chr16:68215378:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Rel_homology_dimerisation_domain(61%) |RHD_dimer(21%),TIG(21%) 2 0 5 55 78 ENST00000569109.5 ENST00000346183.8 downstream upstream none GGCTCGGCGACTTACAGGGAGGGAGAACATGGCTGCTGGCTTTTAGCACCTG___...CGCGGACCTGGAGCGGAGAAGAGAG___AGTCTTGCTCTGTTGCCCAGGCCGGAGTGCAATGGTGCAATcTCAGCTTACTGCAACCTCCACCTCCCAGGTTCAAGCCATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGAGCCATCACGCCCAGCTAGCCATCTTCTAATTTTCATTCCTTCAAAG|ATGGACGACCTCAGTGGGAGGTAGAAGGGAAGATAATCAGGGAAAAATGTCAAGGG___GCTCACATTGTCCTTGAAGTTCCTCCATATCATAACCCAGCAGTTACAGCTGCAGTGCAGGTGCACTTTTATCTTTGCAATGGCgAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26369 FGD1::SLC47A2 ENSG00000102302.8::ENSG00000180638.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FGD1 ENSG00000102302.8 protein_coding - - chrX:54445454-54496234:- chrX:54495126:- chrX:54471887-54522667:- chrX:54521559:- SLC47A2 ENSG00000180638.19 protein_coding - - chr17:19678288-19718979:- chr17:19702674:- chr17:19581601-19622292:- chr17:19605987:- chrX:54485249,chrX:54485252 chr17:19703842,chr17:19703842 NA NA chrX:54511682,chrX:54511685 chr17:19607155,chr17:19607155 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |MatE(16%) |MatE(59%) 1 1 3 57 10 ENST00000375135.4 ENST00000350657.9 upstream downstream none CCGCCGGGCGCCGCTCCGCCGGCCTGTGCCGACTCGGACCCTGGAGCCTCGGAACCCGGACTGCTGGCGCGCAGGGGCTCAGGTTCGGCTCTTGGCGGCCCACTGGATCCCCAGTTTGTCGGACCCTCGGACACCAGCCTGGGCGCTGCTCCAGGCCACCGGGTCTT...CCACCGGGCCCTGCGCTTCTCTTACCACCTGGAGGGCTCGCAGCCTCGGCCTG|AGATGTCATTGCCCTGGTGAGCCAGGTCTTGCCGGTTTATAGTGTCTTTCACGTGTTTGAGGCCATCTGT___TGTGTCTATGGCGGAGTTCTGAGAGGAACTGGGAAGCAGGCCTTTGGTGCCGCTGTGAATGCCATCACATATTACATCATCGGCCTACCACTGGGCATCCTTCTGACCTTTGTGGTCAGAATGAGAATCATGG___GCCTCTGGCTGGGCATGCTGGCCTGTGTCTTCCTGGC HRALRFSYHLEGSQPRP|emslpw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26375 USP48::CDC42-AS1 ENSG00000090686.16::ENSG00000285752.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA USP48 ENSG00000090686.16 protein_coding - - chr1:21678298-21783606:- chr1:21782824:- chr1:22004791-22110099:- chr1:22109317:- CDC42-AS1 ENSG00000285752.1 lncRNA - - chr1:22028317-22052927:- chr1:22031867:- chr1:22354810-22379420:- chr1:22358360:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none none 1 2 0 201 3 ENST00000400301.5 ENST00000649486.1 upstream downstream none GGCGGCCTGGCGCTGGGCGGAGACGGTGCGGCCCGAGGAGGTGTCGCAGGAGCACATCGAGACCGCTTACCGCATCTGGCTGGAGCCCTGCATTCGCGGCGTGTGCAG|AAGAGTCGGAGGCACAGGAAGTACTCAACAAACCCTAGCAGAATCAACAAGAGTTCCAGCATGCAGCTGACCACTCCCTATACCAAAGGCTGTTTCTGAAGTGGCACCAAGTTTGTTAGAGAAGGAGCAGAGCTACAAGTCCCGGAGCCAGACCACAGAGGCAGAC AAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCr|rvggtgstqqtlaestrvpacs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26376 EGLN3::ARHGAP5 ENSG00000129521.15::ENSG00000100852.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EGLN3 ENSG00000129521.15 protein_coding - - chr14:33924227-34462774:- chr14:34137807:- chr14:34393433-34931980:- chr14:34607013:- ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32146263:+ chr14:32545320-32628934:+ chr14:32615469:+ chr14:34130083,chr14:34130086 chr14:32129462,chr14:32129459 NA NA chr14:34599289,chr14:34599292 chr14:32598668,chr14:32598665 NA NA sense sense unknown intron CDS/splice-site inversion high none |RhoGAP_domain(90%) SPT_ssu-like(100%)|RhoGAP(10%) 0 1 2 1 112 unknown ENST00000396582.6 upstream upstream none GAAAAACATCACTGAGAGAGATGGCTGGACATGTGATAGTAATAGCTTTGTGGGGCAAGCAG|GGTTATGTACCGAAGGACTCTACCGTGTCAGCGGGAATAAAACTGACCAAGACAATATTCAAAAGCAGTTTGATCAAG___ATCATAATATCAATCTAGTGTCAATGGAAGTAACAGTAAATGCTGTAGCTGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 26377 ENSG00000286001::SDHA ENSG00000286001.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4440 TRUE 1684 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:272772:+ chr5:218413-315070:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(96%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)|Succ_DH_flav_C(12%) 16 36 8 2084 1674 ENST00000651543.1 ENST00000264932.11 downstream upstream duplicates(2),mismatches(6),multimappers(1) TCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTCCATGTCATAACTGTCTTCATACGCTTCTGCACTCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26378 ENSG00000286001::SDHA ENSG00000286001.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4440 TRUE 1684 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:271821:+ chr5:218413-315070:+ chr5:271936:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Fumarate_reductase_flavoprotein_C-term(42%) EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)|Succ_DH_flav_C(12%) 2 2 31 1441 1674 ENST00000651543.1 ENST00000264932.11 downstream upstream none CGGCAGAGGCGGAAGCGGAGTCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26379 ENSG00000286001::SDHA ENSG00000286001.1::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4440 TRUE 1684 ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:272772:+ chr5:218413-315070:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:256334:+ chr5:218418-257197:+ chr5:256449:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Fumarate_reductase_flavoprotein_C-term(18%) EF-hand_5(96%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%),FAD_binding_2(100%),Succ_DH_flav_C(100%)|Succ_DH_flav_C(0%) 4 1 3 2084 1688 ENST00000651543.1 ENST00000264932.11 downstream upstream mismatches(1),multimappers(1) GCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATGACAGAATCAGCTTTTGTAATTATGTATAATAGCTCATGCATGTGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 26381 PDCD6::ENSG00000286001 ENSG00000249915.9::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4441 TRUE 1685 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:254393:+ chr5:218413-315070:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none EF-hand_domain_pair(22%),EF_hand(100%)| EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(12%) 16 28 9 2084 1674 ENST00000618970.4 ENST00000651543.1 downstream upstream duplicates(2),mismatches(6),multimappers(1) CCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGT MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26382 PDCD6::ENSG00000286001 ENSG00000249915.9::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4441 TRUE 1685 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:271821:+ chr5:271736-315089:+ chr5:271936:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:254393:+ chr5:218413-315070:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none EF_hand(10%)| EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(12%) 2 1 31 1441 1674 ENST00000618970.4 ENST00000651543.1 downstream upstream none CGGCAGAGGCGGAAGCGGAGTCGGCCTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCT MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|cglmstitpspsrgnrrsplrstggstpcpmwtlalgrslwnidp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26383 PDCD6::ENSG00000286001 ENSG00000249915.9::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4441 TRUE 1685 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:256334:+ chr5:218413-315070:+ chr5:256449:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none EF-hand_domain_pair(22%),EF_hand(100%)| EF-hand_5(97%),EF-hand_6(94%),EF-hand_7(2%),EF-hand_8(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(0%) 4 1 3 2084 1688 ENST00000618970.4 ENST00000651543.1 downstream upstream mismatches(1) CTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATG MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|ghsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26384 PDCD6-AHRR::ENSG00000286001 ENSG00000288622.1::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4442 TRUE 1686 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:254393:+ chr5:218413-315070:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none none EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(12%) 12 28 8 2084 1674 ENST00000505113.6 ENST00000651543.1 downstream upstream duplicates(2),mismatches(5),multimappers(1) CCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGT MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|gad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26385 PDCD6-AHRR::ENSG00000286001 ENSG00000288622.1::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4442 TRUE 1686 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:271821:+ chr5:271785-438406:+ chr5:271936:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:254393:+ chr5:218413-315070:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none none EF-hand_5(1%),EF-hand_6(1%),EF-hand_7(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(12%) 1 1 18 1441 1674 ENST00000505113.6 ENST00000651543.1 downstream upstream none CTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG|GTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAG___GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTC MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQr|cglmstitpspsrgnrrsplrstggstpcpmwtlalgrslwnidp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26386 PDCD6-AHRR::ENSG00000286001 ENSG00000288622.1::ENSG00000286001.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4442 TRUE 1686 PDCD6-AHRR ENSG00000288622.1 protein_coding + + chr5:271670-438291:+ chr5:272772:+ chr5:271785-438406:+ chr5:272887:+ ENSG00000286001 ENSG00000286001.1 protein_coding + + chr5:218298-314955:+ chr5:256334:+ chr5:218413-315070:+ chr5:256449:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense out-of-frame CDS/splice-site 3'UTR/splice-site duplication medium none none EF-hand_5(95%),EF-hand_6(91%),EF-hand_7(2%),EF-hand_8(0%)|EF-hand_1(100%),EF-hand_5(100%),EF-hand_6(100%),EF-hand_7(100%),EF-hand_8(100%),Succ_DH_flav_C(0%) 4 1 3 2084 1688 ENST00000505113.6 ENST00000651543.1 downstream upstream mismatches(1) CTGAGAGGTCTCTCGTCGCTGCAGGCGCCTCAGCCCAGCCGCGTGCCTTGGCCCATGGCCGCCTACTCTTACCGCCCCGGCCCTGGGGCCGGCCCTGGGCCTGCTGCAGGCGCGGCGCTGCCGGACCAGAGCTTCCTGTGGAACGTTTTCCAGAG___GGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACG|GTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGATGAGACAAGATGTGGTGATG MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSN|ghsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26390 HECTD4::TMEM116 ENSG00000173064.14::ENSG00000198270.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2434 TRUE 4443 TRUE 1687 HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112273655:- chr12:112597992-112820243:- chr12:112711459:- TMEM116 ENSG00000198270.13 protein_coding - - chr12:111931282-112013185:- chr12:111943369:- chr12:112369086-112450989:- chr12:112381173:- chr12:112273233,chr12:112273239 chr12:111960778,chr12:111960781 NA NA chr12:112711037,chr12:112711043 chr12:112398582,chr12:112398585 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none none none 5 4 7 63 135 ENST00000377560.9 ENST00000552374.7 upstream downstream duplicates(2),mismatches(1) CATAGATGCTGCTGGAAGCTCACTGGGGCGTGGTGCTCTCGTACCAGGATTGG___GAGCGTGTTATGACACAGTGAACAACATGCTATGGACATGCTCAAATGACTATATCGATCAGTGGTGTAACCCTGGGAATCAAGCCTTCCATTATGTCTGCCAGAGACTTGGAGTCAGTCACATTATCACTGAGCCCAAAG|ATATTCTACATTTCCTCATTTCTCTACACCGTCAATTACATCTGGTATTTGTACACAGAGCTGAGGATGAAACACACCCAGAGTGGACAGAGCACATCTCCACTG___GTGATAGATTATACTTGTCGAGTTTGTCAAATGGCCTTTGTTTTCTCAAG___CCTGATACCTCTGCTATTGATGACACCTGTATTCTGTCTGGGAAATACTAGTGAATGTTTCCAAAACTTCAGTCAGA IDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPK|dilhflislhrqlhlvfvhraedethpewtehistgdrlylsslsnglcflkpdtsaiddtcilsgky* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26391 HECTD4::TMEM116 ENSG00000173064.14::ENSG00000198270.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4443 TRUE 1687 HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112279228:- chr12:112597992-112820243:- chr12:112717032:- TMEM116 ENSG00000198270.13 protein_coding - - chr12:111931282-112013185:- chr12:111943369:- chr12:112369086-112450989:- chr12:112381173:- chr12:112273233,chr12:112273239 chr12:111960778,chr12:111960781 NA NA chr12:112711037,chr12:112711043 chr12:112398582,chr12:112398585 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none none none 1 1 0 37 135 ENST00000377560.9 ENST00000552374.7 upstream downstream mismatches(1) CATCTCCAACACACTGAAAGAGGATCAAGCAG___CAAATACTAGCTGTGGGCTGCCTCTAAAAATGCTGCGGAAGACACCCATATATACCTGTGGCACCTACT...TGCTGGTGCCTCCTCCAGGGGGATCAGGCAGCTCTGCCACCCGATCTCTTTTTGGTGGAACAAGTGGTTTGTCATCTTTAAAAA|ATATTCTACATTTCCTCATTTCTCTACACCGTCAATTACATCTGGTATTTGTACACAGAGCTGAGGATGAAACACACCCAGAGTGGACAGAGCACgaCTaCcCTG___GTGATAGATTATACaTGTCGAGTTTGTCAAATGGCCTTTGTgTTCTC LVPPPGGSGSSATRSLFGGTSGLSSLK|nilhflislhrqlhlvfvhraedethpewtehdypgdrlymsslsnglcv NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26408 GOSR1::ENSG00000279089 ENSG00000108587.16::ENSG00000279089.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GOSR1 ENSG00000108587.16 protein_coding + + chr17:30477362-30527592:+ chr17:30492753:+ chr17:28804380-28854610:+ chr17:28819771:+ ENSG00000279089 ENSG00000279089.1 TEC - - chr17:51183191-51186403:- chr17:51183795:- chr17:49260552-49263764:- chr17:49261156:- chr17:30503125,chr17:30503124 chr17:51184913,chr17:51184914 NA NA chr17:28830143,chr17:28830142 chr17:49262274,chr17:49262275 NA NA sense sense out-of-frame CDS/splice-site exon inversion medium none Snare_region_anchored_in_the_vesicle_membrane_C-terminus(17%)| V-SNARE_C(0%)| 3 2 1 1710 37 ENST00000225724.9 ENST00000624148.1 downstream downstream none AGACAATGGCGATTGAGATTGAACAACTTTTGGCAAGG___CTTACAGGGGTAAATGATAAAATGGCAGAATATACCAACAGTGCAGGTGTCCCCTCCTTGAATGCAGCCCTGATGCATACATTACAGCGGCATAGAGACATATTGCAG___GATTATACACATGAATTCCATAAAACCAAAGCAAACTTTATGGCAATACGGGAAAGGGAGAATCTTATGGGATCAGTACGAAAAGATATTGA___GTCATATAAAAGTGGGTCTGGAGTAAACAACAGAAGAACTGAGCTATTTTTGAAAGAACATGACCACCTTCGAAA|GTATTGTTAAAATGGCCCTCACGCTGAATGACTGCATGCTGGCTAGATTTGAAGGATAACTGTCATGCATTTGATATCATTCCTCATAAAAGCATTTTTATTTATATTAAGTAATTTTTTAATGAAAGGAAGAACTAACTGCACAGTCTTGTTTGCTGTACCTTTGAACAGTCTGAcGG TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRk|yc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26409 RAB35::COQ5 ENSG00000111737.12::ENSG00000110871.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB35 ENSG00000111737.12 protein_coding - - chr12:120095099-120117502:- chr12:120103826:- chr12:120532903-120555306:- chr12:120541630:- COQ5 ENSG00000110871.15 protein_coding - - chr12:120503279-120534434:- chr12:120510123:- chr12:120941082-120972237:- chr12:120947926:- chr12:120103220,chr12:120103227 chr12:120512954,chr12:120512958 NA NA chr12:120541024,chr12:120541031 chr12:120950757,chr12:120950761 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Ras_family(41%)|ubiE/COQ5_methyltransferase_family(50%) Arf(66%),Gtr1_RagA(72%),MMR_HSR1(72%),Ras(66%),Roc(72%)|Methyltransf_11(44%),Methyltransf_12(29%),Methyltransf_23(34%),Methyltransf_25(44%),Methyltransf_31(30%),Ubie_methyltran(25%) 3 1 2 629 879 ENST00000229340.10 ENST00000288532.11 upstream downstream mismatches(1) GCGACAGCG___GTGTGGGCAAGAGCAGTTTACTGTTGCGTTTTGCAGACAACACTTTCTCAG___GCAGCTACATCACCACGATCGGAGTGGATTTCAAGATCCGGACCGTGGAGATCAACGGGGAGAAGGTGAAGCTGCAGATCTGGGACACAGCGGGGCAGGAGCGCTTCCGCACCATCACCTCCAC|GACTTGCATGGGTATTAGGAGATGCTGAAGAACTGCCCTTTGATGATGACAAGTTTGATATTTAC...TGCCTTTGGGATCCGGAATGTCACACACATTGATCAG___GCTTTATGATCTATATAGCTTCCAGGTCATCCCTGTCCTGGGAGAGGTCATCGCTGGAGACTGGAAGTCCTAT DSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSt|tcmgirrc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26414 DISP1::MIA3 ENSG00000154309.9::ENSG00000154305.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DISP1 ENSG00000154309.9 protein_coding + + chr1:222815022-223005995:+ chr1:222835215:+ chr1:222988364-223179337:+ chr1:223008557:+ MIA3 ENSG00000154305.18 protein_coding + + chr1:222618097-222668007:+ chr1:222630307:+ chr1:222791439-222841349:+ chr1:222803649:+ chr1:222835746 chr1:222629572 NA NA chr1:223009088 chr1:222802914 NA NA sense sense unknown exon/splice-site CDS duplication medium none none none 0 2 1 137 408 ENST00000661663.1 ENST00000344922.10 downstream upstream none CTTTCGGCGCGCCGCCGCCCGGCGCCGCGGGACTGGGAGACCGG___ATTTCTGAGAGAGCAGACACCATCTTATTTCTGTTGAATTGTATTTAGTAACTCAAAAGGCATATACCAAGCTGTCAGAAGCAGCTTCATTTAAAAG|GTACAAGCACTCCACAGCAGAGGAGACAGCCACACTGGTGATGGCACCACCTCTAGAGGAAGGCTTGGGTGGAGCAATGGAAG___AGATGCAAC...AACAAGCAcCCAGAGACAGCCGCCGAAGAGCCGGCAAGTGTCACACCTTTGGAAAACGCAATCCTTCTAATATATTCATTCATGTTTTATTTAACTAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26417 FAM83G::ENSG00000291214 ENSG00000188522.16::ENSG00000291214.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FAM83G ENSG00000188522.16 protein_coding - - chr17:18968789-19004764:- chr17:19003520:- chr17:18872102-18908077:- chr17:18906833:- ENSG00000291214 ENSG00000291214.1 lncRNA + + chr17:68101871-68161227:+ chr17:68160990:+ chr17:66098012-66157368:+ chr17:66157131:+ chr17:18989699 chr17:68152044 NA NA chr17:18893012 chr17:66148185 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none FAM83_A-H(54%)| FAM83(1%),PLDc_2(0%),SSF(30%)| 1 0 2 102 20 ENST00000388995.11 ENST00000690974.1 upstream upstream none CGGGCTCTGAGGACCCTCGGGGCACGGGCCCCTCTCAGGGGCCCGAGGACAATGGGGTCGGCGACGGCGAGGAAGCCAGCGGGGCGGATGGGGgCCCCATC...CGGACCGCTCCATCCCGCAGCTGGACCTGGGCTGGCCCGACACCATCGCCTACCGCGGCGTGACCCGGGCTAGCGTCTACATGCAGCCCCCCATAGACGGG...AAGATGATCAGCCAGGCACAGAAG|GTTCATGTTGCTGAGGAGGCAGAGGGCTGAGTTCTTCCATCCATCGCCTTCAAGTGTCAGGCGGCTTCCGGTTGGACAAGATGGCTACCCCAGTGGGCTTGTTTCC...CCAGCCTGAGCTTGGGACCATTtTTTTGCTCCTCTCATCCTCCTACCCCCAGAGCTGACAGATTTAGCAAATAAAATTTACAAGATCCTGTTAAA KMISQAQK|vhvaeeaeg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26431 BRWD1::LCA5L ENSG00000185658.14::ENSG00000157578.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39269899:- chr21:40556102-40693485:- chr21:40641825:- LCA5L ENSG00000157578.14 protein_coding - - chr21:39405728-39445805:- chr21:39423490:- chr21:40777654-40817731:- chr21:40795416:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none WD_domain__G-beta_repeat(100%)|Ciliary_protein_causing_Leber_congenital_amaurosis_disease(100%) WD40(100%)|CHD5(100%),Lebercilin(100%),SH3BGR(37%) 0 2 0 46 17 ENST00000333229.6 ENST00000288350.8 upstream downstream none GGCAGCATATTTATATGGGATATTACAAAAGGTACCAAGATGAAACATTATTTTAATATG|GCCAGAAGGAAATATCAGTTGAAAAAAAGCACACCTGGAATGCATCACTCTTTAATTCTCAAATCCATATGATTGCCCAAAGAAGAGATGCTATGG GSIFIWDITKGTKMKHYFNM|arrkyqlkkstpgmhhslilksi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 40585407|40584592 FALSE|FALSE 40801137|40807499 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26432 TFEB::ENSG00000288721 ENSG00000112561.19::ENSG00000288721.1 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TFEB ENSG00000112561.19 protein_coding - - chr6:41683978-41736259:- chr6:41735350:- chr6:41651716-41703997:- chr6:41703088:- ENSG00000288721 ENSG00000288721.1 protein_coding - - chr6:41793314-41921139:- chr6:41807011:- chr6:41761052-41888877:- chr6:41774749:- chr6:41695176 chr6:41809180 NA NA chr6:41662914 chr6:41776918 NA NA sense sense unknown 5'UTR/splice-site 3'UTR/splice-site duplication low none none |UCH(100%),UCH_1(100%),zf-UBP(100%) 1 0 1 18 75 ENST00000373033.6 ENST00000684631.1 upstream downstream none GGCCGGAGCAGGCCGGGAGCAGGTGGCGGGCACAGCTTGCGGGCCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAG|GTTGAGAAAGTGGCGACTTCTATAAGACATGGATAGATGCAAACATGTAGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCTGAACCCTCAGAAGTGGTGCTGCTTAGAGTGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor EB 1 renal cell carcinoma (childhood epithelioid) epithelial,mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26433 TFEB::USP49 ENSG00000112561.19::ENSG00000164663.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TFEB ENSG00000112561.19 protein_coding - - chr6:41683978-41736259:- chr6:41735350:- chr6:41651716-41703997:- chr6:41703088:- USP49 ENSG00000164663.15 protein_coding - - chr6:41789896-41895375:- chr6:41807011:- chr6:41757634-41863113:- chr6:41774749:- chr6:41695176 chr6:41809180 NA NA chr6:41662914 chr6:41776918 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site duplication low none |Ubiquitin_carboxyl-terminal_hydrolase(100%),Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%) |UCH(100%),UCH_1(100%),zf-UBP(100%) 1 0 1 18 75 ENST00000373033.6 ENST00000682992.1 upstream downstream none GGCCGGAGCAGGCCGGGAGCAGGTGGCGGGCACAGCTTGCGGGCCAGGCACCCGAACTTGCGACAAGTTGCCGGAGCCGCGGGGCGCGGGCGGCGGACAGATTGACCTTCAGAGCGAG|GTTGAGAAAGTGGCGACTTCTATAAGACATGGATAGATGCAAACATGTAGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCTGAACCCTCAGAAGTGGTGCTGCTTAGAGTGTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor EB 1 renal cell carcinoma (childhood epithelioid) epithelial,mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26448 RAB27A::CCPG1 ENSG00000069974.17::ENSG00000260916.8 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2436 FALSE NA FALSE NA RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55223889:- chr15:55495164-55611311:- chr15:55516087:- CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55356409:- chr15:55632230-55700708:- chr15:55648607:- chr15:55211883,chr15:55211882 chr15:55357175,chr15:55357148 NA NA chr15:55504081,chr15:55504080 chr15:55649373,chr15:55649346 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Ras_family(84%)| Arf(37%),Ras(37%),Roc(100%)|Glyco_transf_22(100%) 54 24 84 594 181 ENST00000336787.6 ENST00000442196.8 upstream downstream duplicates(28),mismatches(3) GCCAGTGGGCCGGATGGAGCCACTGGCAGAGGCCAGAGAATCCACCTGCAGTTATGGGACACAGCAGGGCAGGAGAG___GTTTCGTAGCTTAACGACAGCGTTCTTCAGAGATGCTATGGGTTTTCTTCTACTTTTTGATCTGACAAATGAGCAAAGTTTCCTCAATGTCAGAAACTGGATAA___GCCAGCTACAGATGCATGCATATTGTGAAAACCCAGATATAGTGCTGTGTGGAAACAAGAGTGATCTGGAGGACCAGAGAGTAGTGAAAGAGGAGGAAGCCATAGCACTCGCAGAGAAATATGG|TCGACCTGATAAAAAGCAACGTATGGTAAATATTGAAAACTCCAGGCATCGAAAACAAGAGCAGAAGCACCTTCAGCCACAGCCTTATAAAAGGGAAGGTAAATGGCATAAATATGGTCGCACTAATGGAAGACAAATGGCAAATCTTGAAATAGAATTGGGGCAATTACCTTTTGATCCTCAATACTGATTCACAATTGAGTTAAATTAGA ASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYg|RPDKKQRMVNIENSRHRKQEQKHLQPQPYKREGKWHKYGRTNGRQMANLEIELGQLPFDPQY* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26449 RAB27A::DNAAF4-CCPG1 ENSG00000069974.17::ENSG00000261771.5 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55223889:- chr15:55495164-55611311:- chr15:55516087:- DNAAF4-CCPG1 ENSG00000261771.5 lncRNA - - chr15:55355248-55498360:- chr15:55356409:- chr15:55647446-55790558:- chr15:55648607:- chr15:55211883,chr15:55211882 chr15:55357175,chr15:55357148 NA NA chr15:55504081,chr15:55504080 chr15:55649373,chr15:55649346 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none Ras_family(84%)| Arf(37%),Ras(37%),Roc(100%)| 54 24 71 594 181 ENST00000336787.6 ENST00000565113.5 upstream downstream duplicates(28),mismatches(1) GCCAGTGGGCCGGATGGAGCCACTGGCAGAGGCCAGAGAATCCACCTGCAGTTATGGGACACAGCAGGGCAGGAGAG___GTTTCGTAGCTTAACGACAGCGTTCTTCAGAGATGCTATGGGTTTTCTTCTACTTTTTGATCTGACAAATGAGCAAAGTTTCCTCAATGTCAGAAACTGGATAA___GCCAGCTACAGATGCATGCATATTGTGAAAACCCAGATATAGTGCTGTGTGGAAACAAGAGTGATCTGGAGGACCAGAGAGTAGTGAAAGAGGAGGAAGCCATAGCACTCGCAGAGAAATATGG|TCGACCTGATAAAAAGCAACGTATGGTAAATATTGAAAACTCCAGGCATCGAAAACAAGAGCAGAAGCACCTTCAGCCACAGCCTTATAAAAGGGAAGGTAAATGGCATAAATATGGTCGCACTAATGGAAGACAAATGGCAAATCTTGAAATAGAATTGGGGCAATTACCTTTTGATCCTCAATACTGATTCACAATTGAGTTAAATTAGA ASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYg|rpdkkqrmvniensrhrkqeqkhlqpqpykregkwhkygrtngrqmanleielgqlpfdpqy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26450 AHI1::AHI1-DT ENSG00000135541.22::ENSG00000231028.11 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AHI1 ENSG00000135541.22 protein_coding - - chr6:135283407-135498434:- chr6:135411348:- chr6:135604545-135819572:- chr6:135732486:- AHI1-DT ENSG00000231028.11 lncRNA + - chr6:135497422-135828703:+ chr6:135587095:- chr6:135818560-136149841:+ chr6:135908233:- chr6:135409310,chr6:135409315 chr6:135595290,chr6:135595292 NA NA chr6:135730448,chr6:135730453 chr6:135916428,chr6:135916430 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none WD_domain__G-beta_repeat(100%)| WD40(100%)| 37 14 70 373 94 ENST00000681022.1 unknown upstream downstream duplicates(28),mismappers(2),mismatches(2) GTTTGGAACCCAGAAACAG___GAGAACAAGTAGCCATGTATTCTGACTTGCCATTCAAGTCACCCATTCGAGACATTTCTTATCATCCATTTGAAAATATGGTTGCATTCTGTGCATTTGGGCAAAATGAGCCAATTCTTCTGTATATTTACGATTTCCATG___TTGCCCAGCAGGAGGCTGAAATGTTCAAACGCTACAATGGAACATTTCCATTACCTGGAATACACCAAAGTCAAGATGCCCTATGTACCTGTCCAAAACTACCCCATCAAGGCTCTTTTCAGATTGATGAATTTGTCCACACTGAAAGTTCTTCAACGAAGATGCAGCTAGTAAAACAGAGGCTTGAAACTGTCACA|GACCTGTAAGAAAACCACAGAAACAACCACATTTACGCACATCAGCACCATAGCAAAACCACATGAGCTACAAGGTGGAAATAACAGCTTGGGCCAGTGCCACTGGAATGCACTTGTGATACAAACATCCAGAAGAGTGACCCTCCAATTAAAGCCCCATGAACAGCAAACAGCGTTTAACCTGTGTGTTATGCAGTGTGTTTTCTCAGTAACAAGTGCGAACAAGAAGCTGGTTTCCATGTCATCTCTTTTGTATTCTTTC VWNPETGEQVAMYSDLPFKSPIRDISYHPFENMVAFCAFGQNEPILLYIYDFHVAQQEAEMFKRYNGTFPLPGIHQSQDALCTCPKLPHQGSFQIDEFVHTESSSTKMQLVKQRLETVT|dl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26452 RXRA::VAV2 ENSG00000186350.12::ENSG00000160293.17 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RXRA ENSG00000186350.12 protein_coding + + chr9:134317098-134440585:+ chr9:134434207:+ chr9:137208944-137332431:+ chr9:137326053:+ VAV2 ENSG00000160293.17 protein_coding - + chr9:133761894-133992604:- chr9:133791826:+ chr9:136627016-136857726:- chr9:136656948:+ chr9:134436010,chr9:134436093,chr9:134436008 chr9:133789903,chr9:133789900,chr9:133789898 NA NA chr9:137327856,chr9:137327939,chr9:137327854 chr9:136655025,chr9:136655022,chr9:136655020 NA NA sense antisense out-of-frame CDS/splice-site CDS duplication/5'-5' high none Ligand-binding_domain_of_nuclear_hormone_receptor(84%),Nuclear/hormone_receptor_activator_site_AF-1(100%),Zinc_finger__C4_type_(two_domains)(100%)| Hormone_recep(84%),Nuc_recep-AF1(100%),zf-C4(100%)| 20 15 12 423 257 ENST00000481739.2 unknown downstream upstream duplicates(9),mismappers(3) GCTCATCGCCTCCTTCTCCCACCGCTCCATCGCCGTGAAGGACGGGATCCTCCTGGCCACCGGGCTGCACGTCCACCGGAACAGCGCCCACAGCGCAGGGGTGGGCGCCATCTTTGACAG___GGTGCTGACGGAGCTTGTGTCCAAGATGCGGGACATGCAGATGGACAAGACGGAGCTGGGCTGCCTGCGCGCCATCGTCCTCTTTAACCCTG___ACTCCAAGGGGCTCTCGAACCCGGCCGAGGTGGAGGCGCTGAGGGAGAAGGTCTATGCGTCCTTGGAGGCCTACTGCAAGCACAAGTACCCAGAGCAGCCGGGAAG|GTCTCCTTGTCCCGTTTAACTTCATTGATGTACATCGCCAAGTCCTTGAAAACAAGAGGCAGAG___...CAGGAAAGGGAACACACTGACCG...___GAATAAATTCCCAG LIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGr|spcpv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-4669 chr9:134379411-134379472:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Retinoid X receptor alpha 1 Yes bladder carcinoma epithelial TSG frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 26453 PRKCE::TTC7A ENSG00000171132.14::ENSG00000068724.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2438 TRUE 4452 TRUE 1688 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ TTC7A ENSG00000068724.18 protein_coding + + chr2:46915869-47076137:+ chr2:47005922:+ chr2:47143008-47303276:+ chr2:47233061:+ chr2:45806229,chr2:45806230 chr2:47000395,chr2:47000393 NA NA chr2:46033368,chr2:46033369 chr2:47227534,chr2:47227532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none C2_domain(100%)|Tetratricopeptide_repeat(100%) C2(0%)|TPR_16(100%),TPR_8(100%),TTC7_N(0%) 10 7 27 93 283 ENST00000306156.8 ENST00000409245.5 downstream upstream duplicates(10),mismatches(3) GGCCGCAGACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAAGACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCGCCACTTCGAGGACTGG|GCAACTCGAGATGTGGTGCTGAGCCGGGTGCCGGAGCAGGAGGAGGACCGGACAGTGAGCTTGCAGAATGCCGCAGCCATCTATGACCTCCTGAGCATCACGTTGGGCAGAAGGGGACAGTACGTCATGCTCTCGGAG___TGCCTGGAGCGAGCCATGAAGTTTGCGTTTGGAGAATTTCACCTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAAG___TCAGCCTACGCTGTGTCCCTGCTGCGGGAGTGTGTGAAGTTGCGG PQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW|ATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQYVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26454 PRKCE::TTC7A ENSG00000171132.14::ENSG00000068724.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4452 TRUE 1688 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ TTC7A ENSG00000068724.18 protein_coding + + chr2:46915869-47076137:+ chr2:47011331:+ chr2:47143008-47303276:+ chr2:47238470:+ chr2:45806229,chr2:45806230 chr2:47000395,chr2:47000393 NA NA chr2:46033368,chr2:46033369 chr2:47227534,chr2:47227532 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none C2_domain(100%)|Tetratricopeptide_repeat(100%) C2(0%)|TPR_16(100%),TPR_8(100%) 4 4 6 93 318 ENST00000306156.8 ENST00000409245.5 downstream upstream duplicates(2) CCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAAGACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCTTTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAACGGGAGCCGCCACTTCGAGGACTGG|TCAGCCTACGCTGTGTCCCTGCTGCGGGAGTGTGTGAAGTTGCGGCCCTCGGACCCCACCGTGCCCCTGATGGCCGCGAAGGTCTGCATCGGGTCCCTTCGCTGG___CTAGAGGAAGCAGAGCACTTTGCCATGATGGTGATCAGCCTCGG LNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDW|SAYAVSLLRECVKLRPSDPTVPLMAAKVCIGSLRWLEEAEHFAMMVISL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26455 PRKCE::TTC7A ENSG00000171132.14::ENSG00000068724.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4452 TRUE 1688 PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45701491:+ chr2:45878484-46415129:+ chr2:45928630:+ TTC7A ENSG00000068724.18 protein_coding + + chr2:46915869-47076137:+ chr2:47005922:+ chr2:47143008-47303276:+ chr2:47233061:+ chr2:45806229,chr2:45806230 chr2:47000395,chr2:47000393 NA NA chr2:46033368,chr2:46033369 chr2:47227534,chr2:47227532 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion medium none C2_domain(100%)|Tetratricopeptide_repeat(100%) C2(25%)|TPR_16(100%),TPR_8(100%),TTC7_N(0%) 1 0 28 3 283 ENST00000306156.8 ENST00000409245.5 downstream upstream duplicates(7),mismatches(2) GGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAGACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACC...GATGAGGTCTCCAGCCCTTTCATCAGAAGACAGAGCTTTAAAATGCAG|GCAACTCGAGATGTGGTGCTGAGCCGGGTGCCGGAGCAGGAGGAGGACCGGACAGTGAGCTTGCAGAATGCCGCAGCCATCTATGACCTCCTGAGCATCACGTTGGGCAGAAGGGGACAGTACGTCATGCTCTCGGAG___TGCCTGGAGCGAGCCATGAAGTTTGCGTTTGGAGAATTTCACCTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGA...___TCAGCCTACGCTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26456 TMEM184B::DMC1 ENSG00000198792.13::ENSG00000100206.11 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2439 FALSE NA FALSE NA TMEM184B ENSG00000198792.13 protein_coding - - chr22:38219291-38273010:- chr22:38230669:- chr22:38615298-38669016:- chr22:38626675:- DMC1 ENSG00000100206.11 protein_coding - - chr22:38518948-38570204:- chr22:38538612:- chr22:38914953-38966209:- chr22:38934617:- chr22:38227445,chr22:38227448 chr22:38538790,chr22:38538790 NA NA chr22:38623451,chr22:38623454 chr22:38934795,chr22:38934795 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Organic_solute_transporter_Ostalpha(47%)|Rad51(55%) Solute_trans_a(74%)|Rad51(43%),RecA(41%) 12 12 14 386 78 ENST00000361906.8 ENST00000216024.7 upstream downstream duplicates(12),low_entropy(1),mismatches(2) CTACATCGTGCGCATCCTCTTCATCGTGCCCATCTACGCCTTTGACTCCTGGCTCAGCCTCCTCTTCTTCACCAACGACCAGTACTACGTGTACTTCGGCACCGTCCGCGACTGCTATGAGG___...GCTGATTTGACTGGTTTCTCCTGGACACTCTCTTCGCAGCCTTGGTCATCTATAATTTCCTGAGCCTGTGCTATGAGTACCTAGGAGGAGAAAGTTCCATCATGTCGGAGATCAGAGGAAAACCCATTGA___GTCCAGCTGTATGTATGGCACCTGCTGCCTCTGGGGAAAGACTTATTCCATCGGATTTCTGAGGTTCTGCAAACAG|GTGAACATCAGgTGGAGCTACTTGATTATGTAGCAGCAAAGTTCCATGAAGAAGCTGGCATCTTCAAGCTATTG___ATTATCGATTCAATAATGGCACTTTTTCGAGTGGATTTCAGTGGCCGTGGGGAGTTGGCCGAACGGCAGCAAAAATTGGCCCAGATGTTGTCACGACTCCAAAAAATCTCAGAAG___AATATAACGTGGCTGTTTTTGTGACCAATCAAATGACTGCCGATCCAGGAGCAACTATGAC___CTTTCAGGCAGATCCCAAAAAACCCATTGGGGGACACATTCTG *fdwflldtlfaALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQ|vnirwsylim* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26457 TEX2::SUPT3H ENSG00000136478.9::ENSG00000196284.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TEX2 ENSG00000136478.9 protein_coding - - chr17:64147227-64263260:- chr17:64188168:- chr17:62224587-62340620:- chr17:62265528:- SUPT3H ENSG00000196284.18 protein_coding - + chr6:44809317-45377953:- chr6:45093421:+ chr6:44777054-45345690:- chr6:45061158:+ chr17:64185970,chr17:64185973,chr17:64185972 chr6:45019411,chr6:45019408,chr6:45019435 NA NA chr17:62263330,chr17:62263333,chr17:62263332 chr6:44987148,chr6:44987145,chr6:44987172 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 9 5 21 201 32 ENST00000584379.6 unknown upstream upstream duplicates(8),mismappers(1),multimappers(1) GGAAATCAAGAAGTCATCGGGTGTCTCTGGAGGTAAACCAG___GGCTTTTGCCTGCACACAGCAGACACAACAGTCCGTCCGGGCACCTGACCCACAGCCGCAGCAGCAGCAAAGGCAGTGTGGAGGAGATCATGTCACAGCCAAAGCAGAAGGAGCTGGCAGGCAGCGTGCGGCAGAAGATGCTTCTCGACTACAGCGTGTACATGGGCAGGTGTGTCCCCCAGGAAAGCCGAAGCCCCCAGAGGAGCCCCCTGCAGAGTGCGGAGAGCAGCCCCACAGCTGGGAAGAAG|AAACTTAACACTAATCAAGAGTAATAGCAGCAATGGGGAAAGAAGATGCAGAGTTATGGATAAAGAAAAGACATTCAAAGATCTTGGGAAAGGAACTGGAAAGAGGAAGTTTTAAACAATCTCTTAGTTCAGATACAGAGGAGAAAAGAAAAACTGATAAATGAGAATAGAATcCTTGGAAAACATCTGCCAAATTAAAAAGCACAAAAAGTAAGAACAAAGAAAGAGGGAGAAAGAGAACCTGATGCATGCTAATCAAGATGGGAG EIKKSSGVSGGKPGLLPAHSRHNSPSGHLTHSRSSSKGSVEEIMSQPKQKELAGSVRQKMLLDYSVYMGRCVPQESRSPQRSPLQSAESSPTAGKK|klntnqe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26459 CHMP2B::MAGI1 ENSG00000083937.10::ENSG00000151276.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2440 TRUE 4453 TRUE 1689 CHMP2B ENSG00000083937.10 protein_coding + + chr3:87227271-87255556:+ chr3:87240790:+ chr3:87276421-87304706:+ chr3:87289940:+ MAGI1 ENSG00000151276.24 protein_coding - - chr3:65353525-66038918:- chr3:65493631:- chr3:65339200-66024593:- chr3:65479306:- chr3:87241700,chr3:87241697 chr3:65598784,chr3:65598791 NA NA chr3:87290850,chr3:87290847 chr3:65584459,chr3:65584466 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Snf7(15%)|Guanylate_kinase(89%),PDZ_domain(100%),Unstructured_region_on_MAGI(100%),Unstructured_region_on_MAGI_(100%),WW_domain(100%) Involucrin(0%),Snf7(0%)|Guanylate_kin(10%),MAGI_u1(100%),MAGI_u5(100%),PDZ(100%),PDZ_6(100%),WW(100%) 5 6 9 14 16 ENST00000263780.9 ENST00000402939.7 downstream downstream duplicates(9),mismatches(2) TCCGGGTGACGCGGCTGCGGTAGCTGCGGATACAAGCCTTCCGCGGGTCCTGCCTGGCGACCCCGACCTCCTCCTGCTGTCTCTCCGCTCCGCCACCCCGAACCCGCCAAGGT...CGGGCCGCCCGGGCGCAGTCTTTAACCATGGCGTCCCTCTTCAAGAAGAAAACCGTGGATG___ATGTAATAAAGGAACAGAATCGAGAGTTACGAGGTACACAGAGGGCTATAATCAGAGATCGAGCAGCTTTAGAGAAACAAGAAAAACAGCTG|GCACAACCCGATCTCCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTGTGAAGGAGTTCTTGGACCTCGAGCAGAGTGGGACTCTTCTGGAAGTCGGCACCTATGAAG___GAAACTATTATGGGACACCCAAGCCTCCTAGCCAGCCAGTCAGTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTTCAGTCTGGCTCTAAGCAGTCGACCCCGAAGCGAACCAAGTCCTACAATGATATGCAAAATGCTGGCATAGTCCACGCGGAGA MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQL|aqpdlpekekclawtitf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26460 MAGI1::CHMP2B ENSG00000151276.24::ENSG00000083937.10 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2441 FALSE NA FALSE NA MAGI1 ENSG00000151276.24 protein_coding - - chr3:65353525-66038918:- chr3:65621972:- chr3:65339200-66024593:- chr3:65607647:- CHMP2B ENSG00000083937.10 protein_coding + + chr3:87227271-87255556:+ chr3:87245714:+ chr3:87276421-87304706:+ chr3:87294864:+ chr3:65598867,chr3:65598869 chr3:87241880,chr3:87241878 NA NA chr3:65584542,chr3:65584544 chr3:87291030,chr3:87291028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Guanylate_kinase(10%)|Snf7(84%) Guanylate_kin(0%)|Involucrin(0%),Snf7(61%) 1 7 8 12 15 ENST00000402939.7 ENST00000471660.5 upstream upstream duplicates(4),mismatches(2) CCCGCTATGACGTGCTGGGGGTCATCGACAGCTGCAAGGAGGCCGTCACCTTCAAGGCCGTCAGACAAG___GAGGAAGGCTGAACAAGGACCTGCGACATTTTCTCAATCAGCGATTCCAGAAGGGGTCTCCTGATCATGAGCTCCAGCAGACCATAAGGGATAACCTTTACCGCCATGCTGTGCCTT|GAATTAGAAATTAAGAAAATGGCCAAGATTGGTAATAAGGAAGCTTGCAAAGTTTTAGCCAAACAACTTGTGCATCTACGGAAACAGAAGACGAGAACTTTTGCTGTAAGTTCAAAAGTTACTTCTATGTCTACACAAACAAAAGTGATGAATTCCCAAATGAAGATGGCTGGAGCAATGTCTACTACAGCAAAA___ACAATGCAGGCAGTTAACAA RYDVLGVIDSCKEAVTFKAVRQGGRLNKDLRHFLNQRFQKGSPDHELQQTIRDNLYRHAVP|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26461 CHMP2B::MAGI1 ENSG00000083937.10::ENSG00000151276.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4453 TRUE 1689 CHMP2B ENSG00000083937.10 protein_coding + + chr3:87227271-87255556:+ chr3:87227556:+ chr3:87276421-87304706:+ chr3:87276706:+ MAGI1 ENSG00000151276.24 protein_coding - - chr3:65353525-66038918:- chr3:65493631:- chr3:65339200-66024593:- chr3:65479306:- chr3:87241700,chr3:87241697 chr3:65598784,chr3:65598791 NA NA chr3:87290850,chr3:87290847 chr3:65584459,chr3:65584466 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |Guanylate_kinase(89%),PDZ_domain(100%),Unstructured_region_on_MAGI(100%),Unstructured_region_on_MAGI_(100%),WW_domain(100%) |Guanylate_kin(10%),MAGI_u1(100%),MAGI_u5(100%),PDZ(100%),PDZ_6(100%),WW(100%) 0 1 5 11 16 ENST00000263780.9 ENST00000402939.7 downstream downstream duplicates(1),mismatches(2) GTTCCCGGTCACCTGAGCTCCGGGTGACGCGGCTGCGGTAGCTGCGGATACAAGCCTTCCGCGGGTCCTGCCTGGCGACCCCGACCTCCTCCTGCTGTCTCTCCGCTCCGCCACCCCGAACCCGCCAAGGTCCTGTCCTTTTCCTCCTGTCCTTTGCCAGCGTTGGGCCGGACCGGGCCGAG...TTCAAGAAGAAAACCGTGGATG|GCACAACCCGATCTCCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTGTGAAGGAGTTCTTGGACCTCGAGCAGAGTGGGACTCTTCTGGAAGTCGGCACCTATGAAG___GAAACTATTATGGGACACCCAAGCCTCCTAaCCAG...CATAGTCCACGCGGAGAATGAGGAGGAGGATGACGTTCCTGAAATGAACAGCAGCTTTACAG___CAGCCGATTCTGGTGAACAAGAGGAGCACACTCTCCAAG FKKKTVD|gTTRSPREGEVPGVDYNFLTVKEFLDLEQSGTLLEVGTYEGNYYGTPKPPn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26463 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2442 TRUE 4454 TRUE 1690 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111778369:- chr7:111366166-111846462:- chr7:111418425:- chr7:111526873,chr7:111526882 chr7:111780749,chr7:111780755 NA NA chr7:111166929,chr7:111166938 chr7:111420805,chr7:111420811 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |DHR-2__Lobe_A(79%) |DHR-2(74%) 1 14 3 151 149 ENST00000331762.7 ENST00000437633.6 upstream downstream duplicates(4) CCGGGCTGAGCTGCGCAGCGG___GGTTTTGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAGCGGGAGAAAGG|AACTTCTATAAGACTGAACTGAACAAGGAGGAGATGTATATACGCTACATTCACAAACTCTATGATCTGCATCTCAAAGCACAGAACTTTACAG___AAGCTGCATATACCCTCCTCTTATATGACGAGCTACTGGAATGGTCTGATCGGCCCCTCAGGGAGTTCCTGACCTACCCCATGCAAACAGAATGGCAGCGCAAAGAGCACCTGCACCTCACCATCATCCAGAACTTTGACAGAGGCAAA___TGTTGGGAGAATGGCATTATCTTGTGCCGGAAGATTGCAGAGCAGTATGAGAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,FALSE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26464 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4454 TRUE 1690 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111915904:- chr7:111366166-111846462:- chr7:111555959:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |C2_domain_in_Dock180_and_Zizimin_proteins(100%),DHR-2__Lobe_A(100%),DOCK_N-terminus(11%) |DHR-2(100%),DOCK-C2(100%),DOCK_N(0%) 0 2 3 151 104 ENST00000405709.7 ENST00000437633.6 upstream downstream duplicates(3) GGCGGAGCTTGCCGCCGGCGGAGGGCGGGGTCTGCGCGGGGACTTCCCCCGGGCTGAGCTGCGCAGCGG___...GCGTCAGGCTTGAACAACATGATTTTAAAGCACGTGTCTGTCTGTCGTTTTTTACTTTTAGGGTTTTGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAGCGGGAGAAAGG|GTTTAGCAGTTTCCTTACAGCTATTGCACGGAGACATTGAACAAATCAGAAGGGAATATTCATCAGTATTTTCTCATGGAGTATCCATAACAAGGAAGCTGGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,FALSE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26465 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4454 TRUE 1690 IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111769677:- chr7:111366166-111846462:- chr7:111409733:- chr7:111526873,chr7:111526882 chr7:111780749,chr7:111780755 NA NA chr7:111166929,chr7:111166938 chr7:111420805,chr7:111420811 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |DHR-2__Lobe_A(73%) |DHR-2(57%) 0 3 2 151 153 ENST00000331762.7 ENST00000437633.6 upstream downstream none GGCGGAGCTTGCCGCCGGCGGAGGGCGGGGTCTGCGCGGGGACTTCCCCCGGGCTGAGCTGCGCAGCGG___...GGGTTTTGGCCAAATTGGGCGAGGGCACAAAATAACCACTTACCCCTTCTCACCGAGGAAGAGCGGGAGAAAGG|AAGCTGCATATACCCTCCTCTTATATGACGAGCTACTGGAATGGTCTGATCGGCC...AGAATGGCAGCGCAAAGAGCACCTGCACCTCACCATCATCCAGAACTTTGACAGAGGCAAA___TGTTGGGAGAATGGCATTATCTTGTGCCGGAAGATTGCAGAGCAGTATGAGAGTTATTATGACTACAGAAACCTGAGCAAGATGCGG___ATGATGGAAGCCTCTTTGTATGACAAAATTATGGACCAGCAACGTCTTGAACCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,TRUE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26468 ASXL2::ADGRF3 ENSG00000143970.18::ENSG00000173567.16 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4455 TRUE 1691 ASXL2 ENSG00000143970.18 protein_coding - - chr2:25733753-25878487:- chr2:25878166:- chr2:25956622-26101356:- chr2:26101035:- ADGRF3 ENSG00000173567.16 protein_coding - - chr2:26308173-26346817:- chr2:26314623:- chr2:26531041-26569685:- chr2:26537491:- chr2:25846342,chr2:25846347 chr2:26315747,chr2:26315750 NA NA chr2:26069211,chr2:26069216 chr2:26538615,chr2:26538618 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none HB1__ASXL__restriction_endonuclease_HTH_domain(12%)|7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(100%) HARE-HTH(0%)|7tm_2(100%),GPS(100%) 0 1 8 122 45 ENST00000435504.9 ENST00000651242.2 upstream downstream duplicates(3) GCAACGGCAGCAAGAGGACCGGCCGCCCCATAaACCCCCCCGCGCACCACCCCCGCCGCTTCCTCTGCTTGGGTGCCCCCCCGGTCTGACTTCCCTTTTCTCCCACCTTTCCCGGCACCGCGGGAAAAGCAGCGCAGGGCAGAGCAGGCAGGGAGGGCGGCCGGAGCCCGGACACGGGAGCCTCCCAGTCAGTTCAAGACCCGACATGAGGGAAAAGGGACGTAGGAAGAAGGGCAGGACCTGGGCGGAGGCCGCCAAGACG|GTGAGTACATGAGCTGCTTCGAGGCCCAGGGCTTCAAGTGGAACCTGTATGAGGTGGTGAGGGTGC...TGAAGGCGACAGATGTGGCTCGACTTCCATACCAGCTGTCCATCTCCTGTGCCACCTCCCCTGGCTTCCAGCTGAGCTGCTGCATCCCCAGCACAAACCTGGC...AAG___CTGCTGCAGGCAGGCCAGGGCAGTCCTGCTGAGGAGGTGCCACAGATCCTGGCACAGCTGCCAGGGCAGGCGGCAGAGGCAAGTTCACCCTCCG MREKGRRKKGRTWAEAAKT|vst* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE additional sex combs like 2, transcriptional regulator 2 melanoma, CCRCC, AML epithelial, leukaemia_lymphoma TSG other,nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 26469 ASXL2::ADGRF3 ENSG00000143970.18::ENSG00000173567.16 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4455 TRUE 1691 ASXL2 ENSG00000143970.18 protein_coding - - chr2:25733753-25878487:- chr2:25878166:- chr2:25956622-26101356:- chr2:26101035:- ADGRF3 ENSG00000173567.16 protein_coding - - chr2:26308173-26346817:- chr2:26313122:- chr2:26531041-26569685:- chr2:26535990:- chr2:25846342,chr2:25846347 chr2:26315747,chr2:26315750 NA NA chr2:26069211,chr2:26069216 chr2:26538615,chr2:26538618 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none HB1__ASXL__restriction_endonuclease_HTH_domain(12%)|7_transmembrane_receptor_(Secretin_family)(100%),GPCR_proteolysis_site__GPS__motif_(100%) HARE-HTH(0%)|7tm_2(100%),GPS(100%) 0 2 4 122 74 ENST00000435504.9 ENST00000651242.2 upstream downstream duplicates(1) GCAACGGCAGCAAGAGGACCGGCCGCCCCATAaACCCCCCCGCGCACCACCCCCGCCGCTTCCTCTGCTTGGGTGCCCCCCCGGTCTGACTTCCCTTTTCTCCCACCTTTCCCGGCACCGCGGGAAAAGCAGCGCAGGGCAGAGCAGGCAGGGAGGGCGGCCGGAGCCCGGACACGGGAGCCTCCCAGTCAGTTCAAGACCCGACATGAGGGAAAAGGGACGTAGGAAGAAGGGCAGGACCTGGGCGGAGGCCGCCAAGACG|CTGCTGCAGGCAGGCCAGGGCAGTCCTGCTGAGGAGGTGCCACAGATCCTGGCACAGCTGCCAGGGCAGGCGGCAGAGGCAAGTTCACCCTCCGACTTACTGACCCTGCTGAGCACCATGAAATACGTGGCCAAGGTGGTGGCAGAGGCCAGAATACAGCTTGACCGCAGAGCCCTGAAG___AATCTCCTGATTGCCACAGACAAGGTCCTAGATATGGACACCAGGTCTCTGTGGACCCTGGCCCAAGCCCGGAAGCCCTGGGCAGGCTCGACTCTCCTGCTGGCTGTGGAGACCCTGGCATGCAGCCTGTGCCCACAGGACCAC MREKGRRKKGRTWAEAAKT|LLQAGQGSPAEEVPQILAQLPGQAAEASSPSDLLTLLSTMKYVAKVVAEARIQLDRRALKNLLIATDKVLDMDTRSLWTLAQARKPWAGSTLLLAVETLACSLCPQD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE additional sex combs like 2, transcriptional regulator 2 melanoma, CCRCC, AML epithelial, leukaemia_lymphoma TSG other,nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 26471 ASXL2::ADGRF3 ENSG00000143970.18::ENSG00000173567.16 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4455 TRUE 1691 ASXL2 ENSG00000143970.18 protein_coding - - chr2:25733753-25878487:- chr2:25878166:- chr2:25956622-26101356:- chr2:26101035:- ADGRF3 ENSG00000173567.16 protein_coding - - chr2:26308173-26346817:- chr2:26310237:- chr2:26531041-26569685:- chr2:26533105:- chr2:25846342,chr2:25846347 chr2:26315747,chr2:26315750 NA NA chr2:26069211,chr2:26069216 chr2:26538615,chr2:26538618 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none HB1__ASXL__restriction_endonuclease_HTH_domain(12%)|7_transmembrane_receptor_(Secretin_family)(1%) HARE-HTH(0%)|7tm_2(1%) 1 0 1 122 114 ENST00000435504.9 ENST00000651242.2 upstream downstream none CCGCGCACCACCCCCGCCGCTTCCTCTGCTTGGGTGCCCCCCCGGTCTGACTTCCCTTTTCTCCCACCTTTCCCGGCACCGCGGGAAAAGCAGCGCAGGGC...GAGCAGGCAGGGAGGGCGGCCGGAGCCCGGACACGGGAGCCTCCCAGTCAGTTCAAGACCCGACATGAGGGAAAAGGGACGTAGGAAGAAGGGCAGGACCTGGGCGGAGGCCGCCAAGACG|GGCGTCTTCATCCTtTTGTTTGGTTGCCTCATG...TGCCGCGCCCAAGCCCCCAGCTCCACCATCTCCCTG___GCCACAAATGAAGGCTGCATCTTGGAACACAGCAAAGGAGGAAGCGACACTGCCAG___GAAGACAGA MREKGRRKKGRTWAEAAKT|GVFILLFGCL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE additional sex combs like 2, transcriptional regulator 2 melanoma, CCRCC, AML epithelial, leukaemia_lymphoma TSG other,nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 26472 FOXN3::NRXN3 ENSG00000053254.16::ENSG00000021645.20 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXN3 ENSG00000053254.16 protein_coding - - chr14:89124871-89619149:- chr14:89280950:- chr14:89591215-90085493:- chr14:89747294:- NRXN3 ENSG00000021645.20 protein_coding + - chr14:78170373-79868291:+ chr14:79597799:- chr14:78636716-80334634:+ chr14:80064142:- chr14:89245912,chr14:89245917,chr14:89245919 chr14:79614843,chr14:79614844,chr14:79614846 NA NA chr14:89712256,chr14:89712261,chr14:89712263 chr14:80081186,chr14:80081187,chr14:80081189 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Forkhead_domain(100%)| Forkhead(100%)| 1 0 5 85 9 ENST00000345097.8 unknown upstream downstream duplicates(1),mismatches(1) GGACGATGACACCCCCCCATCCCCTGCCCACTCTGACATGCCCTACGATGCCAGGCAGAACCCCAACTGCAAACCCCCCTACTCCTTCAGCTGCCTCATAT...CAAAATCTAATTCAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAG___CACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGAGAA...GGAGCCCTTCTCCAAG|ATCCAAGAGACTGACTCAGGCTATGAATCAGCTACGTAAGTTCCATGAAAGGGCTATGTCTTCTAAGAAAAAGGATCACGCTGACCTCCACTTTCAACAAGTTGCCTCTAAGCATGAAGTGACCCTAAGAGATAGGAAGATAAGGAGGTAATGGGTCTGGTTGAGACCAAGCATCCAAACTAAGAAATAAAGTTTGaGTATGGTAACAtCAATAATAATATTAC GALLQ|dprd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26473 FOXN3::ENSG00000259106 ENSG00000053254.16::ENSG00000259106.1 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXN3 ENSG00000053254.16 protein_coding - - chr14:89124871-89619149:- chr14:89280950:- chr14:89591215-90085493:- chr14:89747294:- ENSG00000259106 ENSG00000259106.1 lncRNA - - chr14:79611418-79633311:- chr14:79611830:- chr14:80077761-80099654:- chr14:80078173:- chr14:89245912,chr14:89245917,chr14:89245919 chr14:79614843,chr14:79614844,chr14:79614846 NA NA chr14:89712256,chr14:89712261,chr14:89712263 chr14:80081186,chr14:80081187,chr14:80081189 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Forkhead_domain(100%)| Forkhead(100%)| 2 3 1 85 6 ENST00000345097.8 ENST00000553812.1 upstream downstream duplicates(2) CAGGCTTTGAAAAAGACACCTTATCACCCACACCCACACGTGTTCAATACACCTCCCACCTGTCCTCAGGCATATCAAAG___CACATCAGGTCCACCCATCTGGCCGGGCAGTACCTTCTTCAAGAGAAATGGAGCCCTTCTCCAAG|ATTAAACAAGTGCAACTTTCCCAATCTCACACAACTACTTGTGGAGCCAGGATTCCATACAGGCAATGTGAGTGCACATCCAAAACTTGAAACCACTGAACAATAATGCTTTCTGAAAG...___CTTCCACTGAG...TGCCTCTAAGCATGAAGTGACCCTAAGAGATAGGAAGATAAGGAG___CTAGATCAAATAAGTGGATAATGCCgGAGAGACAGACGCCATCCCAACAGCCAGAG QALKKTPYHPHPHVFNTPPTCPQAYQSTSGPPIWPGSTFFKRNGALLQ|d* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26476 CASKIN1::ABCA3 ENSG00000167971.16::ENSG00000167972.14 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CASKIN1 ENSG00000167971.16 protein_coding - - chr16:2177180-2196605:- chr16:2186706:- chr16:2227181-2246606:- chr16:2236707:- ABCA3 ENSG00000167972.14 protein_coding - - chr16:2275881-2340746:- chr16:2329853:- chr16:2325882-2390747:- chr16:2379854:- chr16:2186357,chr16:2186357,chr16:2186360,chr16:2186359,chr16:2186362 chr16:2330161,chr16:2330158,chr16:2330161,chr16:2330306,chr16:2330161 NA NA chr16:2236358,chr16:2236358,chr16:2236361,chr16:2236360,chr16:2236363 chr16:2380162,chr16:2380159,chr16:2380162,chr16:2380307,chr16:2380162 NA NA sense sense out-of-frame intron 5'UTR/splice-site duplication high none Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Variant_SH3_domain(100%)|ABC-2_family_transporter_protein(100%),ABC_transporter(100%) Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),SH3_2(100%)|ABC2_membrane_3(100%),ABC_tran(100%) 2 1 0 16 61 ENST00000343516.8 ENST00000382381.7 upstream downstream none CGGCCACATCGACATCATCAG___AGCGGGATCAATGCCCACGTGAGGAACACCTACAGCCAGACAGCCCTGGACATCGTGCACCAGTTCACCACGTCCCAGGC...GGGCTGCATCCATGACAACCGGACGGGCAATGACCGGGTGGGCTACTTCCCGTCCTCCCTGGGCGAGGCCATTGTCAAGCGAGCAGG|TGCTGGAGAGTCATGCCTGTGAG...TCCTGAAGGGAGACCTGCTGTGTGGAGCCTCTTCTGGGACCCAG___CCATGAGTGTGGAGCTGAGCAACTGAACCTGAAACTCTTCCACTGTGAGTCAAGGAG GCIHDNRTGNDRVGYFPSSLGEAIVKRAg|agescl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26477 TMEM38A::ENSG00000141979 ENSG00000072954.7::ENSG00000141979.4 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM38A ENSG00000072954.7 protein_coding + + chr19:16661139-16690023:+ chr19:16682508:+ chr19:16771950-16800834:+ chr19:16793319:+ ENSG00000141979 ENSG00000141979.4 protein_coding - + chr19:16479067-16628204:- chr19:16527725:+ chr19:16589878-16739015:- chr19:16638536:+ chr19:16685785,chr19:16685785 chr19:16525558,chr19:16525555 NA NA chr19:16796596,chr19:16796596 chr19:16636369,chr19:16636366 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none TRIC_channel(76%)| TRIC(78%)| 1 1 1 54 13 ENST00000187762.7 unknown downstream upstream none CCACTACCACCACGGGTGGTTCGTCATGATTGCAACTGGGTGGGTCAAAG___GTTCTGGTGTCGCCCTCATGTCCAACTTTGAGCAGCTGCTCCGAGGGGTCTGGAAGCCAGAGACCAACGAGATCCTGCACATGTCTTT|GATGACAAAACACTGACACTCAACTAGCTTAACCTGTTTAAGGAGGACAGGAAACAGAACACCCTGCCGTGCCTTGCAGC...GACCTGTCCCGGAGCCACAGGAAGACAGGGCTGTCACTAACCCAGCATAAGCTCTGCCACAGAATATCCCTCATTGTTCCCCAGTAAGCCACTCAACGCCC HYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEILHMSl|mtkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26480 KRT81::KRT86 ENSG00000205426.11::ENSG00000170442.12 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4456 FALSE NA KRT81 ENSG00000205426.11 protein_coding - - chr12:52285913-52291534:- chr12:52287984:- chr12:52679697-52685318:- chr12:52681768:- KRT86 ENSG00000170442.12 protein_coding + + chr12:52249300-52309163:+ chr12:52305663:+ chr12:52643084-52702947:+ chr12:52699447:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none Intermediate_filament_protein(62%),Keratin_type_II_head(100%)|Intermediate_filament_protein(37%) Filament(73%),Keratin_2_head(100%)|Filament(28%) 0 0 0 44683 17391 ENST00000327741.9 ENST00000423955.7 upstream upstream mismatches(1) CAGACACCTCCGTGGgTGTCAAGCTGGACAACAGCCGGGgCCTGAACAaGGACTGagTCATTGCCGAGtaTAAGGCgCAGaATGACGACAaTGTCACCCGC...TCCTGGTACCGCAGCAAG|TGTGAGGAGgTGAAGGCCAgGGTGATCAGGCACGGGGAGACCCTGCGCCGCACCAAGGAGGAGATCAAtGAGCTGAACCGCAT SWYRSK|CEEvKArVIRHGETLRRTKEEINELNR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26482 TUBGCP3::ATP11A ENSG00000126216.15::ENSG00000068650.19 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4457 FALSE NA TUBGCP3 ENSG00000126216.15 protein_coding - - chr13:112485011-112588205:- chr13:112565111:- chr13:113139325-113242519:- chr13:113219425:- ATP11A ENSG00000068650.19 protein_coding + + chr13:112690038-112887168:+ chr13:112857818:+ chr13:113344352-113541482:+ chr13:113512132:+ chr13:112560455,chr13:112560674,chr13:112560674,chr13:112560674,chr13:112560674,chr13:112560674,chr13:112560674 chr13:112856418,chr13:112856463,chr13:112856454,chr13:112856443,chr13:112856434,chr13:112856422,chr13:112856413 NA NA chr13:113214769,chr13:113214988,chr13:113214988,chr13:113214988,chr13:113214988,chr13:113214988,chr13:113214988 chr13:113510732,chr13:113510777,chr13:113510768,chr13:113510757,chr13:113510748,chr13:113510736,chr13:113510727 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Phospholipid-translocating_P-type_ATPase_C-terminal(100%) |PhoLip_ATPase_C(100%) 1 0 1 361 104 ENST00000649778.1 ENST00000375645.8 upstream upstream duplicates(1) CCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAGATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGC___TTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTTTCAGAACTCCACAGAAAACTTCATTCACAG|ATTGTTAAATTAATCAAATTTTCAAAAGAGCACCCAATCACGTTAGCAATTGGCGATGGTGCAAATGATGTCAGCATGATTCTGGAAGCGCACGTGGGCATAG___GTGTCATCGGCAAGGAAGG QYAVRVIGSNFAPTVERDEFLVAEKIKKELIRQRREADAALFSELHRKLHSQ|IVKLIKFSKEHPITLAIGDGANDVSMILEAHVGIGVIGKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 113158346 FALSE 113490492 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26484 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4458 TRUE 1692 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21838010:+ chr9:21802635-21937650:+ chr9:21838009:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22077679:+ chr9:21994138-22128102:+ chr9:22077678:+ chr9:21841771,chr9:21841771,chr9:21841771,chr9:21841771 chr9:22065712,chr9:22065703,chr9:22065684,chr9:22065683 NA NA chr9:21841770,chr9:21841770,chr9:21841770,chr9:21841770 chr9:22065711,chr9:22065702,chr9:22065683,chr9:22065682 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(57%)| PNP_UDP_1(62%)| 2 0 7 203 9 ENST00000644715.2 ENST00000580467.5 downstream upstream duplicates(2),low_entropy(1),mismappers(1) CCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGATAAAAAATG...CAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGaCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|GATGATTACGGAGCTAGGAATTTCCTACGAAGCTGGGTGATAAAAGGACATTGGACAAAAACACAGATAGCTTCATTCTATACCAGGATCCATCACTGATTAGCTGTATTATATTTGTCTCTACTGTAATTTGAGGAGAATGATACCTGCTTCTCTATCTTGTTGGG NYQANIWALKEEdCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|ddygarnflrswvikghwtktqiasfytrihh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26485 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4458 TRUE 1692 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21838010:+ chr9:21802635-21937650:+ chr9:21838009:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:21841771,chr9:21841771,chr9:21841771,chr9:21841771 chr9:22065712,chr9:22065703,chr9:22065684,chr9:22065683 NA NA chr9:21841770,chr9:21841770,chr9:21841770,chr9:21841770 chr9:22065711,chr9:22065702,chr9:22065683,chr9:22065682 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(57%)| PNP_UDP_1(62%)| 0 1 7 203 30 ENST00000644715.2 ENST00000580576.6 downstream upstream duplicates(1),mismappers(1) GCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|GCTTTGGTATCAGGATGATTCTGGCCTCATAAAATGAGTTGGGG...ATGGAATAGTTTCAGAAGGAATGGTACCAGCTCCTCTTTGTACCTCTGGTAGAATTCGGCTGTGAATCCATCTGGTCCTGGACTTTTTTTGGTTG___GTGGAGAACTTCAGTAGAGGAAGTGGCAGGAATTTGGGAATGAGGAGCACAGTGAT ACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|alvsg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26486 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4458 TRUE 1692 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21838010:+ chr9:21802635-21937650:+ chr9:21838009:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22120200:+ chr9:21994138-22128102:+ chr9:22120199:+ chr9:21841771,chr9:21841771,chr9:21841771,chr9:21841771 chr9:22065712,chr9:22065703,chr9:22065684,chr9:22065683 NA NA chr9:21841770,chr9:21841770,chr9:21841770,chr9:21841770 chr9:22065711,chr9:22065702,chr9:22065683,chr9:22065682 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Phosphorylase_superfamily(57%)| PNP_UDP_1(62%)| 1 0 0 203 132 ENST00000644715.2 ENST00000428597.6 downstream upstream duplicates(1) CTTCAAAGGTCAACTACCAGGCGAACATCTGGGCTTTGAAGGAAGAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATT...CAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|TATCTTACAGACAGCAAGTTGAACATTGTGGGATGCATGAGCTATT RGVCHIPMAEPFCPKTRE|yltdsklnivgcmsy NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26490 DHX34::PTK2B ENSG00000134815.19::ENSG00000120899.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2443 FALSE NA FALSE NA DHX34 ENSG00000134815.19 protein_coding + + chr19:47349315-47382704:+ chr19:47349352:+ chr19:47852572-47885961:+ chr19:47852609:+ PTK2B ENSG00000120899.18 protein_coding + + chr8:27311482-27459391:+ chr8:27397548:+ chr8:27168999-27316908:+ chr8:27255065:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation medium none |FERM_N-terminal_domain(100%),FERM_central_domain(100%),Focal_adhesion_targeting_region(100%),Protein_kinase_domain(100%) |FERM_M(100%),FERM_N_2(100%),Focal_AT(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%) 0 31 0 16 144 ENST00000328771.9 ENST00000397501.5 downstream upstream duplicates(4),mismatches(4) TGGGACCGGAAGTTAAGGCGTTCGCGGCGTGTG|GACTGCAATGTGCCGgTCTTAGCTGCTGCCTGAGAGGATGTCTGGGGTGTCCGAGCCCCTGAGcCGAGTAAAGTTGGGCACaTTACGCCGGCCTGAAGGCCCTGCAGAGCCCATGGTGGTGGTACCAGTAGATGTGGAAAAGGAGGACGTGCGTATCCTCAAGGTCTGCTTCTATAGCAACAGCTTCAATCCTGGGAAgAACTTCAAACTGGTCAAATGCACTGTCCAGACGGAGATCCGG___GAGATCATCACCTCCATCCTGCTGAGCGGGCGGATCGGGCCCAACATCCGGTTGGCTGAGTGCTATGGGCTGAGGCTGAAGCACATGAAGTCCGATGAGATCCACTGGCTGCACCCACAGATGACGGTGGGTGAGGTGCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-6842 chr8:27433370-27433434:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein-tyrosine kinase 2-beta TK FAK Q14289 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26491 SNRNP35::KMT5A ENSG00000184209.15::ENSG00000183955.14 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2444 TRUE 4459 TRUE 1693 SNRNP35 ENSG00000184209.15 protein_coding + + chr12:123458088-123473154:+ chr12:123458216:+ chr12:123942635-123957701:+ chr12:123942763:+ KMT5A ENSG00000183955.14 protein_coding + + chr12:123384132-123409353:+ chr12:123390630:+ chr12:123868679-123893900:+ chr12:123875177:+ chr12:123461688,chr12:123461685,chr12:123461684 chr12:123383993,chr12:123383991,chr12:123383991 NA NA chr12:123946235,chr12:123946232,chr12:123946231 chr12:123868540,chr12:123868538,chr12:123868538 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |SET_domain(100%) |SET(100%) 0 19 0 250 643 ENST00000527158.2 ENST00000402868.8 downstream upstream duplicates(5) CCGGCGCGGAGAATCTGCTGTCGCCTGCAGCTGCTCGCCTGTCTCCGTCGGAAGGGAGCCCAAGCTTTGCAGAG|GAGAACGTATTTACCGGGCAGTCAAAGATCTATTCCTACATGAGCCCGAACAAATGCTCTGGAATGCGTTTCCCCCTTCAGGAAGAGAACTCAGTTACACATCACGAAGTCAAATGCCAGGGGAAACCATTAGCCGGAATCTACAGGAAACGAGAAG___AGAAAAGAAATGCTGGGAACGCAGTACGGAGCGCCATGAAGTCCGAGGAACAGAAGATCAAAGACGCCAGGAAAGGTCCCCTGGTACCTTTTCCAAACCAAAAATCTGAAGCAGCAGAACCTCCAAAAACTCCACCCTCATCTTGTGATTCCACCAATGCAGCCATCGCCAAGCAAGCCCTGAAAAAGCCCATCAAGGGCAAACAGGCCCCCCGAAAAAA___AGCTCAAGGAAAAACGCAACAGAATCGCAAACTTACGGATTTCTACCCTGTCCGAAGGAGCTCCAGGAAGAGCAAAGCCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26492 SNRNP35::KMT5A ENSG00000184209.15::ENSG00000183955.14 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4459 TRUE 1693 SNRNP35 ENSG00000184209.15 protein_coding + + chr12:123458088-123473154:+ chr12:123458216:+ chr12:123942635-123957701:+ chr12:123942763:+ KMT5A ENSG00000183955.14 protein_coding + + chr12:123384132-123409353:+ chr12:123389433:+ chr12:123868679-123893900:+ chr12:123873980:+ chr12:123461688,chr12:123461685,chr12:123461684 chr12:123383993,chr12:123383991,chr12:123383991 NA NA chr12:123946235,chr12:123946232,chr12:123946231 chr12:123868540,chr12:123868538,chr12:123868538 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |SET_domain(100%) |SET(100%) 0 2 0 250 47 ENST00000527158.2 ENST00000402868.8 downstream upstream none GCTGCTCGCCTGTCTCCGTCGGAAGGGAGCCCAAGCTTTGCAGAG|GCAGGAAGATGTCCAAGCCCCGCGCGGTGGAGGCGGCGGCGGCGGCGGCGGCGGTGGCAGCGACGGCCCCGGGCCCGGAGATGGTGGAGCGGAGGGGCCCGGGGAGGCCCCGCACCGACGGG___GAGAACGTATTTACCGGGCAGTCAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26499 BRD7::ENSG00000260573 ENSG00000166164.17::ENSG00000260573.4 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA BRD7 ENSG00000166164.17 protein_coding - - chr16:50313487-50368988:- chr16:50350023:- chr16:50347398-50402899:- chr16:50383934:- ENSG00000260573 ENSG00000260573.4 lncRNA + - chr16:50407184-50546347:+ chr16:50444532:- chr16:50441095-50580258:+ chr16:50478443:- NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' medium none Bromodomain(69%)| Bromodomain(30%)| 2 1 3 1601 6 ENST00000567826.1 unknown upstream downstream duplicates(2),mismappers(1),mismatches(1) GAAGAGTTAAG___GAGGATAAAAAGAAGCGAGATCGAGACCGGGTGGAGAATGAGGCAGAAAAAGATCTCCAGTGTCACGCCCCTGTGAGATTAGACTTGCCT...CAGACACCCCTTCAAGAAGCTTTGAATCAACTGATGAGACAATTGCAGAG___AAAAGATCCAAGTGCTTTCTTTTCATTTCCTGTGACTGATTTTATTGCTCCTGGCTACTCCATGATCATTAAACACCCAATGGATTTTAGTACCATGAAAGAAAAGATCAAGAACAATGACTATCAGTCCATAGAAGAACTAAAG|AGACTCTCTCTCTGTCACCCAGGCTGGAGTGCAGTGCTGCAATCACAGCTCATTACAGCCTCAAATTCCTGTGCTCAAGCAATCCTCCTGCCTCAGCCTCCTGGGAAGGGGGCATTACAG___ATGCATCCAAACCCGGAGTAGAGAGCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26502 ENSG00000289733::PSMD3 ENSG00000289733.1::ENSG00000108344.15 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000289733 ENSG00000289733.1 lncRNA + + chr16:81739033-81958294:+ chr16:81923594:+ chr16:81772638-81991899:+ chr16:81957199:+ PSMD3 ENSG00000108344.15 protein_coding + + chr17:39980807-39997959:+ chr17:39994954:+ chr17:38137060-38154212:+ chr17:38151207:+ chr16:81924523,chr16:81924523,chr16:81924523 chr17:39994374,chr17:39994379,chr17:39994371 NA NA chr16:81958128,chr16:81958128,chr16:81958128 chr17:38150627,chr17:38150632,chr17:38150624 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |PCI_domain(100%),Proteasome_regulatory_subunit_C-terminal(100%) |PCI(100%),Rpn3_C(100%) 0 0 0 41 1568 ENST00000565054.6 ENST00000264639.9 downstream upstream mismatches(1) GAGAGaCTGGTGGAGtTCGTCAGTTAtTtCGAGAAGCATTCACTCTACCGAAAGcTGAGAtTGCGCTACCCCGTttCtCCCGAGCTCCTGGAGCGCTACAA...ATGACTACAAAGCCAAGCGAAGCGATGAGCTGAGCTTCTGCCGTGGTGCCCTCATCCACAATGTCTCCAAGGAGCCCGGGGGCTG|GTGCACAAGCTTCTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26503 PLCG2::PSMD3 ENSG00000197943.12::ENSG00000108344.15 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PLCG2 ENSG00000197943.12 protein_coding + + chr16:81779279-81962685:+ chr16:81923594:+ chr16:81812884-81996290:+ chr16:81957199:+ PSMD3 ENSG00000108344.15 protein_coding + + chr17:39980807-39997959:+ chr17:39994954:+ chr17:38137060-38154212:+ chr17:38151207:+ chr16:81924523,chr16:81924523,chr16:81924523 chr17:39994374,chr17:39994379,chr17:39994371 NA NA chr16:81958128,chr16:81958128,chr16:81958128 chr17:38150627,chr17:38150632,chr17:38150624 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Phosphatidylinositol-specific_phospholipase_C__X_domain(100%),SH2_domain(100%),SH3_domain(67%)|PCI_domain(100%),Proteasome_regulatory_subunit_C-terminal(100%) PH_12(100%),PI-PLC-X(100%),SH2(100%),SH3_1(2%),SH3_2(2%),SH3_9(2%)|PCI(100%),Rpn3_C(100%) 0 0 0 41 1568 ENST00000564138.6 ENST00000264639.9 downstream upstream mismatches(1) GAGAGaCTGGTGGAGtTCGTCAGTTAtTtCGAGAAGCATTCACTCTACCGAAAGcTGAGAtTGCGCTACCCCGTttCtCCCGAGCTCCTGGAGCGCTACAA...ATGACTACAAAGCCAAGCGAAGCGATGAGCTGAGCTTCTGCCGTGGTGCCCTCATCCACAATGTCTCCAAGGAGCCCGGGGGCTG|GTGCACAAGCTTCTCA DYKAKRSDELSFCRGALIHNVSKEPGGw|ctsf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26554 TAOK2::ABCA4 ENSG00000149930.18::ENSG00000198691.14 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 2445 TRUE 4465 TRUE 1694 TAOK2 ENSG00000149930.18 protein_coding + + chr16:29973868-29992261:+ chr16:29974648:+ chr16:29985189-30003582:+ chr16:29985969:+ ABCA4 ENSG00000198691.14 protein_coding - - chr1:93992834-94121148:- chr1:94011385:- chr1:94458390-94586704:- chr1:94476941:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |ABC-2_family_transporter_protein(13%),ABC_transporter(49%) |ABC2_membrane_3(3%),ABC_tran(56%) 46 49 41 479 121 ENST00000279394.7 ENST00000370225.4 downstream downstream duplicates(5),low_entropy(1),mismatches(18) ATTCGGGGTTCAGACCCCACAATCAGAAATCCGGAATTCGGCAGCTGTCGCCCTCGACGAGGGGGAGGACTGGACCGCGAGGTCAGATTAGGTTGTCACCCCCTCCCCTCCAGGGGAGGCTTCCCGGGCCCGCCCCTCAGGAAGGGCGAAAGCCGAGGAAGAGGTGGCAAGGGGAAAGGTCTCCTTGCCCCTCTCCCTGCTTGGCAGAGCCGCTGGAGGACCCCAGGCGGAAGCGGAGGCGCTGGGGCACCATAGTGACCCCTACCAG|ACGCTGCTCAGGTTCAACGCCGTGCTGAGGAAGCTGCTCATTGTCTTCCCCCACTTCTGCCTGGGCCGGGGCCTCATTGACCTTGCACTGAGCCAGGCTGTGACAGATGTCTATGCCCGGTTTG___GTGAGGAGCACTCTGCAAATCCGTTCCACTGGGACCTGATTGGGAAGAACCTGTTTGCCATGGTGGTGGAAGGGGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase TAO2 STE STE20 TAO Q9UL54 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26555 TAOK2::ABCA4 ENSG00000149930.18::ENSG00000198691.14 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4465 TRUE 1694 TAOK2 ENSG00000149930.18 protein_coding + + chr16:29973868-29992261:+ chr16:29974648:+ chr16:29985189-30003582:+ chr16:29985969:+ ABCA4 ENSG00000198691.14 protein_coding - - chr1:93992834-94121148:- chr1:94008871:- chr1:94458390-94586704:- chr1:94474427:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation medium none |ABC_transporter(49%) |ABC_tran(56%) 0 1 3 479 589 ENST00000279394.7 ENST00000370225.4 downstream downstream none CGCCCCTCAGGAAGGGCGAAAGCCGAGGAAGAGGTGGCAAGGGGAAAGGTCTCCTTGCCCCTCTCCCTGCTTGGCAGAGCCGCTGGAGGACCCCAGGCGGAAGCGGAGGCGCTGGGGCACCATAGTGACCCCTACCAG|GATTGCCGAGCCCACTAAGGAGCCCATTGTTGATGAAGATGATGATGTGGCTGAAGAAAGACAAAGAATTATTACTGGTGGAAATAAAACTGACATCTTgAGGCTACATGAACTAACCAAG___ATTTATCCgGGCACCTCCAGCCCAGCAGTGGACAGGCTGTGTGTCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase TAO2 STE STE20 TAO Q9UL54 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26556 ATF6::PBX1 ENSG00000118217.7::ENSG00000185630.20 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 2446 TRUE 4466 TRUE 1695 ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161792327:+ chr1:161736088-161947364:+ chr1:161762117:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164849340:+ chr1:164524821-164868533:+ chr1:164818577:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 9 10 31 520 1112 ENST00000681738.1 ENST00000627490.2 downstream upstream duplicates(2),mismatches(3) AAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGAATTCAAAACCTTCAATTCAGCCCAAGCCTTTATTGCTTCCAGCAGCACCCAAGACTCAAACAAACTCCAGTGTTCCAGCAAAAACCATCATTATTCAGACAGTACCAACGCTTATGCCATTGGCAAAGCAGCAACCAATTATCAGTTTACAACCTGCACCCACTAAAG|CACCTCCCCCGGCACCCCCGGCAAGCCCACTATCACTTCCGACTTCCAACGTGGCATCCGTGAGATCTGTCCACATTAGGCGAAGCAGGAGAACACTGAGAGCAGCAGGATGGGTTTGGAAAGAGCATGCCTCTGGAAACACAGCTTCCTGGGAATTCACATGAGGCCA NGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTK|apppappasplslptsnvasvrsvhirrsrrtlraagwvwkehasgntasweft* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 26557 ATF6::PBX1 ENSG00000118217.7::ENSG00000185630.20 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE TRUE 2447 TRUE 4466 TRUE 1695 ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161792327:+ chr1:161736088-161947364:+ chr1:161762117:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164884542:+ chr1:164524821-164868533:+ chr1:164853779:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none none none 5 14 22 520 102 ENST00000681738.1 ENST00000699848.1 downstream upstream duplicates(3),mismatches(1) ACAAGACTG___AAAATGGACTGACTCCAAAGAAAAAAATTCAGGTGAATTCAAAACCTTCAATTCAGCCCAAGCCTTTATTGCTTCCAGCAGCACCCAAGACTCAAACAAACTCCAGTGTTCCAGCAAAAACCATCATTATTCAGACAGTACCAACGCTTATGCCATTGGCAAAGCAGCAACCAATTATCAGTTTACAACCTGCACCCACTAAAG|GAAATTGCAAGAACCTATTGATGGCTTGGATGCTCTGGTGGTGACAGCAAGTCCTCTTCTCTTGACTGAAGAAATGTCTTCCCCTATCTGAAAAGTGGCCTCTCTTCCGGAATGACACATACTGACTTTTGAAGAAGCAAAAGGATACCTGCTGGCCAGTCATATCAGCCAAAAAACTCTGGTGAGCAGTGAGTTGGCAGATGTTGCAACTGGAAGACTGTGG KTENGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTK|gncknllmawmlww* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 26562 RABEP2::KCNB2 ENSG00000177548.13::ENSG00000182674.6 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2449 TRUE 4468 TRUE 1696 RABEP2 ENSG00000177548.13 protein_coding - - chr16:28904421-28936526:- chr16:28924403:- chr16:28915742-28947847:- chr16:28935724:- KCNB2 ENSG00000182674.6 protein_coding + + chr8:72537225-72938349:+ chr8:72935935:+ chr8:73449460-73850584:+ chr8:73848170:+ chr16:28922397,chr16:28922535 chr8:72804723,chr8:72804720 NA NA chr16:28933718,chr16:28933856 chr8:73716958,chr8:73716955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Rabaptin(43%)|Ion_transport_protein(99%),Kv2_voltage-gated_K+_channel(100%) Rabaptin(6%)|Ion_trans(0%),Ion_trans_2(100%),Kv2channel(100%) 7 11 14 1283 461 ENST00000568703.5 ENST00000523207.2 upstream upstream mismatches(2) GTGGCCTGGGGTAAGAGATGGGAAGAGAGGCTGATCCCTGTCCCCCACAGCACTGGAGGACTCCCGGTCCCAGGAAGGGGCAAATGGTGAGGCCGAGTCAGGTGAGCTCAGCCGGCTTCGGGCTGAGCTGGCAGGCGCCCTGGCAGAAATGGAAACCATGAAGGCTGTGGCAGAGGTGAGCGAGAGCACGAAGGCCGAGGCTGTGGCTGCGGTGCAGCGGCAGTGCCAAGAGGAGGTGGCCTCGCTGCAGGCCATCCTGAAAG|ATCCTGGCCATCGTGTCTATCCTGTTCATTGTGCTTTCCACCATTGCTTTGTCTCTCAATACGCTGCCGGAGCTGCAGGAAACGGACGAATTTGGACAACTCAATGACAACCGCCAATTAGCACACGTGGAGGCTGTGTGTATTGCATGGTTTACCATGGAGTACCTTTTGCGATTCTTA METMKAVAEVSESTKAEAVAAVQRQCQEEVASLQAILK|dpghrvypvhcafhhcfvsqyaagaagngriwttq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26563 RABEP2::KCNB2 ENSG00000177548.13::ENSG00000182674.6 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4468 TRUE 1696 RABEP2 ENSG00000177548.13 protein_coding - - chr16:28904421-28936526:- chr16:28925103:- chr16:28915742-28947847:- chr16:28936424:- KCNB2 ENSG00000182674.6 protein_coding + + chr8:72537225-72938349:+ chr8:72935935:+ chr8:73449460-73850584:+ chr8:73848170:+ chr16:28922397,chr16:28922535 chr8:72804723,chr8:72804720 NA NA chr16:28933718,chr16:28933856 chr8:73716958,chr8:73716955 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none Rabaptin(0%)|Ion_transport_protein(99%),Kv2_voltage-gated_K+_channel(100%) Rabaptin(0%)|Ion_trans(0%),Ion_trans_2(100%),Kv2channel(100%) 0 1 2 358 461 ENST00000358201.9 ENST00000523207.2 upstream upstream none AGGGAGTGCGGGAATCCGCCGTTTGCGCTGAGGCAATGGCGGCAGCTGCGCCGGTGGCCGCGGACGACGATGAGCGGCGGCGGCGGCCGGGGGCTG|ATCCTGGCCATCGTGTCTATCCTGTTCATTGTGCTTTCCACCATTGCTTTGTCTCTCAATACGCTGCCGGAGCTGCAGGAAACGGACGAATTTGGACAACTCAATGACAACCGCCAATTAGCACACGTGGAG MAAAAPVAADDDERRRRPGA|dpghrvypvhcafhhcfvsqyaagaagngriwttq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26577 SFSWAP::KCND2 ENSG00000061936.10::ENSG00000184408.10 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4471 TRUE 1697 SFSWAP ENSG00000061936.10 protein_coding + + chr12:131711081-131799738:+ chr12:131728428:+ chr12:132195626-132284283:+ chr12:132212973:+ KCND2 ENSG00000184408.10 protein_coding + + chr7:120273175-120750337:+ chr7:120480708:+ chr7:119913229-120390391:+ chr7:120120762:+ chr12:131729710,chr12:131729711 chr7:120342713,chr7:120342711 NA NA chr12:132214255,chr12:132214256 chr7:119982767,chr7:119982765 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Alternative_splicing_regulator__(100%),Surp_module(51%)|Domain_of_unknown_function_(DUF3399)(100%),Ion_transport_protein(19%) DRY_EERY(100%),Surp(13%)|DUF3399(100%),Ion_trans(55%),Ion_trans_2(55%) 3 3 1 228 9 ENST00000261674.9 unknown downstream upstream inconsistently_clipped(1) TGACAATGAAGATGATGATGATGAAGAAGATGGGAATTACCTTCATCCCTCTCTCTTTGCCTCCAAGAAGTGTAACCGCCTTGAAGAGCTGATGAAG___CCCTTGAAGGTAGTGGACCCAGATCATCCCCTCGCAGCACTTGTTCGTAAGGCACAGGCTGACAGTTCCACTCCCACCCCACACAACGCAGACGGTGCGCCTGTGCAGCCCTCCCAGGTGGAGTACACGGCAGACT|ATGCCAGCACCACACTCTTGGACTTCTCAGCCTCCAGAACT___GATGACCCTTGACAGATGCTGGCACCATGCTCTTGGATCTCTCAGCTTCCATAACTGTGAGCCTAATAAGTGTTTGTACTTTGTAAATTACCTAGTCTGTGGCATTCTGTTATAG DNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDPDHPLAALVRKAQADSSTPTPHNADGAPVQPSQVEYTAD|yasttlldfsasrtddp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26578 SFSWAP::KCND2 ENSG00000061936.10::ENSG00000184408.10 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4471 TRUE 1697 SFSWAP ENSG00000061936.10 protein_coding + + chr12:131711081-131799738:+ chr12:131728428:+ chr12:132195626-132284283:+ chr12:132212973:+ KCND2 ENSG00000184408.10 protein_coding + + chr7:120273175-120750337:+ chr7:120732903:+ chr7:119913229-120390391:+ chr7:120372957:+ chr12:131729710,chr12:131729711 chr7:120342713,chr7:120342711 NA NA chr12:132214255,chr12:132214256 chr7:119982767,chr7:119982765 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Alternative_splicing_regulator__(100%),Surp_module(51%)|Domain_of_unknown_function_(DUF3399)(100%),Ion_transport_protein(19%) DRY_EERY(100%),Surp(13%)|DUF3399(100%),Ion_trans(0%),Ion_trans_2(0%) 0 2 0 228 12 ENST00000261674.9 ENST00000331113.9 downstream upstream none AACGCAGACGGTGCGCCTGTGCAGCCCTCCCAGGTGGAGTACACGGCAGACT|GTATGGTGACATGGTGCCAAAAACCATAGCAGGGAAGATTTTTGGTTCTATCTGTTCGCTGAGTGGGGTCTTGGTCATTGCTCTACCTGTTCCGGTGATTGTATCCAACTTCAG NADGAPVQPSQVEYTAD|cmvtwcqkp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26579 AUTS2::ABCA4 ENSG00000158321.19::ENSG00000198691.14 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69599962:+ chr7:69063282-70258492:+ chr7:69064948:+ ABCA4 ENSG00000198691.14 protein_coding - - chr1:93992834-94121148:- chr1:94113066:- chr1:94458390-94586704:- chr1:94578622:- chr7:69823049,chr7:69823041 chr1:94120217,chr1:94120225 NA NA chr7:69288035,chr7:69288027 chr1:94585773,chr1:94585781 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |ABC-2_family_transporter_protein(100%),ABC_transporter(100%) |AAA_21(100%),ABC2_membrane_3(100%),ABC_tran(100%) 2 3 1 14 4 ENST00000342771.10 ENST00000370225.4 downstream downstream none CGGCCGGCGGCGGCGGGGCTGGCCGGACCCGGGCGCTCTCACTCGCCTCGTCGTCGGGCTCCGACAAGGAAGACAATGGGAAGCCCCCGTCCTCCGCCCCG...CCCAGACCCCCGCGGAGGAAGCGGAGAGAGTCCACCTCGGCAGAAGAGGACATCATTGATGGATTTGCCATGACCAGCTTTGTCACTTTTGAAGCGCTGGAG|ATTCGCTTTGTGGTGGAACTCGTGTGGCCTTTATCTTTATTTCTGGTCTTGATCTGGTTAAGGAATGCCAACCCgCTCTACAGCCATCATGAAT___GCCATTTCCCCAAC...AAACTATAACAACTCCAT___CTTGGCAAGGGTATATCGAGATTTTCAAGAACTCCTCATGAATGCACCAGAGAGCCAGCACCTTGGCCGTATTTGGACAGAGC PRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALE|IRFVVELVWPLSLFLVLIWLRNANPLYSHHECHFP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26587 LINGO2::LINC01241 ENSG00000174482.11::ENSG00000236306.3 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- LINC01241 ENSG00000236306.3 lncRNA + + chr9:25780032-25844585:+ chr9:25844320:+ chr9:25780030-25844583:+ chr9:25844318:+ chr9:29197661,chr9:29197661,chr9:29197663 chr9:25798790,chr9:25798794,chr9:25798788 NA NA chr9:29197659,chr9:29197659,chr9:29197661 chr9:25798788,chr9:25798792,chr9:25798786 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site inversion high none none none 0 2 1 21 5 ENST00000698404.1 ENST00000665756.1 upstream upstream mismatches(1) CGCGGCAGGGGCGGGGGACGTGAGCGGCAGgCCCGGCGCGCTTtCGcGCTCCGCcCCGCGCCGCGGGGgCGCAGGTCCGAACCCGGCTGAGCTCTGGAAAGCTGTGCCTTGAACTGGAGCCACTTCGGGGATGAGATCCTGACCCGCACCCTGAGGGCAGCCCCGGGAG|TATGAATATCTCTGATGAAATGAGACAATGTCCAAGGGAAGCTGGTATCTTCAAGAAGGTACTCATGATAAGAAGAGTGAGGACGCACACCTTTAACTTAATATGCAGCAGAGACAAGACTTTTCTTCAAACCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26627 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099 chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205 chr5:32167777,chr5:32167777 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Golgi_phosphoprotein_3_(GPP34)(93%) |GPP34(36%) 2 1 2 6 1167 ENST00000503441.1 ENST00000265070.7 upstream downstream none GTACATCATGAGGAGAGAAAAGCCAGCTATGTGACGACGAACGGAATATCCAATCGGAATAGCTACTGGGAAGCAGCTCATGCCACCAGAGGAGGAGTGGC??G...CAGCAG___ATGGGATGCCTGGTTGCAAGAAAACAAGCTCAGGGCTCCCACAGATTCTACGTGATG|GGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTGTATGTTAATTGAATTAGCATTGAGAGGAAGGTTACAACTAGAGGCTTGTGGAATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 26640 PATJ::TM2D1 ENSG00000132849.22::ENSG00000162604.13 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4484 TRUE 1698 PATJ ENSG00000132849.22 protein_coding + + chr1:61742477-62178675:+ chr1:61775334:+ chr1:62208149-62644347:+ chr1:62241006:+ TM2D1 ENSG00000162604.13 protein_coding - + chr1:61681046-61725423:- chr1:61697174:+ chr1:62146718-62191095:- chr1:62162846:+ chr1:61784278 chr1:61693692 NA NA chr1:62249950 chr1:62159364 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' low none L27_2(100%),PDZ_domain(12%)| L27_2(100%),PDZ(1%),PDZ_6(0%)| 2 1 0 209 6 ENST00000371158.6 unknown downstream upstream none CAAAAAGCAGTACTTCTAGCAGCCTAAATGATACAACTCTGCCTGAAACA___GTTTGTTGGGGCCATGTTGAAGAGGTTGAGCTCATTAATGATGGCTCTGGACTAGGTTTTGGAATAGTTGGAGGAAAAACAAGTGGCGTGGTTGTGAGGACTATAGTTCCTGGAGGATTAGCAGATCGA|AAATAGATGGACCATAGTTAACATCACACGTTTGGAGTAAGATATGCTGTAAGTCACTGTAATGATTAAAC...CCTTCTTCCCTTCCTTCTTTCCTTTGCAGGGTCTCACTATTTCCAAGGGTCTCACTGTGTTGCCCAGGTTGGTCTTGAACTCCTGG KSSTSSSLNDTTLPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADR|k* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26641 PATJ::TM2D1 ENSG00000132849.22::ENSG00000162604.13 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4484 TRUE 1698 PATJ ENSG00000132849.22 protein_coding + + chr1:61742477-62178675:+ chr1:61775334:+ chr1:62208149-62644347:+ chr1:62241006:+ TM2D1 ENSG00000162604.13 protein_coding - - chr1:61681046-61725423:- chr1:61683546:- chr1:62146718-62191095:- chr1:62149218:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none L27_2(100%),PDZ_domain(12%)| L27_2(100%),PDZ(1%),PDZ_6(0%)| 1 0 0 209 408 ENST00000371158.6 ENST00000371180.7 downstream downstream none GCTCATTAATGATGGCTtTGGACTAGGTTTTGGAATAGTTGGAGGAAAAACAAGTGGCGTGGTTGTGAGGACTATAGTTCCTGGAGGATTAGCAGATCGA|ATTGTTGGACCTTCAGATGGAAGTAGTTACAT LINDGfGLGFGIVGGKTSGVVVRTIVPGGLADR|IVGPSDGSSY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26660 ENSG00000229964::OPA1 ENSG00000229964.1::ENSG00000198836.11 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2454 FALSE NA FALSE NA ENSG00000229964 ENSG00000229964.1 lncRNA + + chr3:194091561-194109174:+ chr3:194091646:+ chr3:193809350-193826963:+ chr3:193809435:+ OPA1 ENSG00000198836.11 protein_coding + + chr3:193593144-193697811:+ chr3:193692063:+ chr3:193310933-193415600:+ chr3:193409852:+ chr3:194093818,chr3:194093816,chr3:194093813 chr3:193686660,chr3:193686655,chr3:193686655 NA NA chr3:193811607,chr3:193811605,chr3:193811602 chr3:193404449,chr3:193404444,chr3:193404444 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none |OPA1_C(0%) 115 182 162 502 1005 ENST00000457815.1 ENST00000361828.7 downstream upstream duplicates(65),low_entropy(5),mismatches(3) CGTTTCCATCTTACAGACCAGGAAACAGGCTCAGAGAGAAGAAGGGAATTATGTACCTCGGTTTAGAGCCAAAGTGTCCTGCCTGCATTCCAGCTGTTTCCATCCATGTCCATGTCAACTGGCATCTGGAACTACTCGTAGCAGCATCCACTCAAT|AGAAAGTTAGAGAAATTCAAGAAAAACTTGATGCTTTCATTGAAGCTCTTCATCAGGAGAAATAAATTAA___AATCGTACTCATAATCAGCTCTGCATACATCTGAAGAACAAAAACATCAACGTCTTTTGTCCAGCCTCTTTTTCTTCTGCTGTTCCACCTTTCTAAACATACAATAAAGTCATGGGATAAAAATAATCGATGTATGTTACGGGCGCTTTAACCATCAGCTGCCTCTCGAATGGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26661 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240107:- chr11:19245610-19263167:- chr11:19261654:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19192476:- chr11:19203577-19232118:- chr11:19214023:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through high none |LIM_domain(100%) |Fer4_4(100%),LIM(100%) 56 53 87 238 398 ENST00000527884.5 ENST00000533783.2 upstream downstream duplicates(12),low_entropy(13),mismatches(7),multimappers(8) GTCACGCTCCCTCTGCCCGCCAGCCGGCCCGCCAGTCCCGGTCCCGGCGTCTCTCTCCGGCACCCACCTCGGCGCTGCGGAAAGACTGACTGCCAG___GATATTAAAACTTTTAGTACAATTGATTGGACTACTTGAACCATCGGGATTTGGGGAGGAACTCCAGATTTTTCATTTTTAAACTCTAAATGTATGAGGAATTTACAGAATGGAGAACGAAAAG|ACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCA___TGGCCTGCAGGAAGGCTCTTGACAGCACGACAGTCGCGGCTCATGAGTCGGAGATCTACTGCAAGGT MENEK|t* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26662 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240548:- chr11:19245610-19263167:- chr11:19262095:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19192476:- chr11:19203577-19232118:- chr11:19214023:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through high none |LIM_domain(100%) |Fer4_4(100%),LIM(100%) 17 13 57 174 398 ENST00000250024.9 ENST00000533783.2 upstream downstream duplicates(5),low_entropy(4),mismatches(4) CTGAATTTGGAACTTTCCTGTCAAGCGACCTCCCACGACTTTACTGCTGAGCCTGTGCACGTGTGTGTAAGGGGAGAAATCCAGGCATCTAGATGCAGACTTGTACCCAGTTACTTGGGGTCGCGTGCGCTCAGCTGGGACCTGGGCTCGTGCGCTTAGTCCGGAGCCCTGATCTGCGAACAG|ACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCA___TGGCCTGCAGGAAGGCTCTTGACAGCACGACAGTCGCGGCTCATGAGTCGGAGATCTACTGCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26663 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19241497:- chr11:19245610-19263167:- chr11:19263044:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19192476:- chr11:19203577-19232118:- chr11:19214023:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through high none |LIM_domain(100%) |Fer4_4(100%),LIM(100%) 10 13 33 220 398 ENST00000527884.5 ENST00000533783.2 upstream downstream duplicates(1),low_entropy(3),mismatches(6) GGGGCTTGGCTGCTCCTGGACGGTCACGCTCCCTCTGCCCGCCAGCCGGCCCGCCAGTCCCGGTCCCGGCGTCTCTCTCCGGCACCCACCTCGGCGCTGCGGAAAGACTGACTGCCAG|ACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCA___TGGCCTGCAGGAAGGCTCTTGACAGCACGACAGTCGCGGCTCATGAGTCGGAGATCTACTGCAAGGTGTGCTATGGGC...___GTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26664 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240107:- chr11:19245610-19263167:- chr11:19261654:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19202042:- chr11:19203577-19232118:- chr11:19223589:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site deletion/read-through medium none |LIM_domain(100%) |Fer4_4(100%),LIM(100%) 0 5 87 238 55 ENST00000527884.5 ENST00000649842.1 upstream downstream duplicates(5),low_entropy(2),mismatches(7),multimappers(6) CCCACCTCGGCGCTGCGGAAAGACTGACTGCCAG___GATATTAAAACTTTTAGTACAATTGATTGGACTACTTGAACCATCGGGATTTGGGGAGGAACTCCAGATTTTTCATTTTTAAACTCTAAATGTATGAGGAATTTACAGAATGGAGAACGAAAAG|CAGGCCAAGGCTGGTGACAGCCTTCATATATTTAAAGAGGACAAGAGCCCCTCAGACTCAGTTGAGCTGAACGGAG...ACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCA___...CA?GGGC?A?CATCTCGGCCTGCAGT?CCAACA___GTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAAATTCACTGCaAAGTTTGGAG MENEK|qakagdslhifkedkspsdsvelng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26665 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19241407:- chr11:19245610-19263167:- chr11:19262954:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19192476:- chr11:19203577-19232118:- chr11:19214023:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion/read-through medium none |LIM_domain(100%) |Fer4_4(100%),LIM(100%) 2 2 35 64 398 ENST00000620009.4 ENST00000533783.2 upstream downstream duplicates(1),low_entropy(1),mismatches(4) TTCAAATCGGGGGCTTGGCTGCTCCTGGACGGTCACGCTCCCTCTGCCCGCCAGCCGGCCCGCCAGTCCCGGTCCCGGCGTCTCTCTCCGGCACCCACCTCGGCGCTGCGGAAAGACTGACTGCCAGGTACGCGGGCTCCCGGGCCTGAGAGGGGCAGCGGTGCTGACGAGTCCCGGCTCAGCCCCCGCCGGCTCCCGCCGTGAGGTGGACTGACAG|ACTTGACCTTGACCAGATAGTCTTCAAGATGCCAAACTGGGGCGGAGGCGCAAAATGTGGAGCCTGTGAAAAGACCGTCTACCATGCAGAAGAAATCCAGTGCAATGGAAGGAGTTTCCACAAGACGTGTTTCCACTGCA___TGGCCTGCAGGAAGGCTCTTGACAGCACGACAGTCGCGGCTCATGAGTCGGAGAT...___GTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26666 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240107:- chr11:19245610-19263167:- chr11:19261654:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19186348:- chr11:19203577-19232118:- chr11:19207895:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |LIM_domain(50%) |LIM(21%) 1 5 12 238 708 ENST00000527884.5 ENST00000533783.2 upstream downstream duplicates(1),low_entropy(1) CGCCAGCCGGCCCGCCAGTCCCGGTCCCGGCGTCTCTCTCCGGCACCCACCTCGGCGCTGCGGAAAGACTGACTGCCAG___GATATTAAAACTTTTAGTACAATTGATTGGACTACTTGAACCATCGGGATTTGGGGAGGAACTCCAGATTTTTCATTTTTAAACTCTAAATGTATGAGGAATTTACAGAATGGAGAACGAAAAG|GTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAAATTCACTGCaAAGTTTGGAGAGTCCGAGAAGTGCCCTCGATGTGGCAAGTCAGTCTATGCTGCTGAGAAGGTTATGGGAGGTGGCAAG___CCTTGGCACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGAC...GCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTACACAACAAGTGGAAAAGAAAGAATGAAGAGGTGCGCCGTTTCTCAGATTTTTTG MENEK|vpkagtlsyhqqpfqihckvwrvrevpsmwqvslcc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26667 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240548:- chr11:19245610-19263167:- chr11:19262095:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19186348:- chr11:19203577-19232118:- chr11:19207895:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through medium none |LIM_domain(50%) |LIM(21%) 1 1 8 174 708 ENST00000250024.9 ENST00000533783.2 upstream downstream duplicates(1),low_entropy(1) TTTTTTAAATTTAAAAAAAAAGTCTTAATTATAAGACTCTTTAAATGCCCAACTGCATACTTGGAGCTTTGGGACTGAATTTGGAACTTTCCTGTCAAG...GTGTGTGTAAGGGGAGAAATCCAGGCATCTAGATGCAGACTTGTACCCAGTTACTTGGGGTCGCGTGCGCTCAGCTGGGACCTGGGCTCGTGCGCTTAGTCCGGAGCCCTGATCTGCGAACAG|GTCCCCAAAGCCGGCACGCTCAGTTACCACCAGCAACCCTTCCAAATTCACTGCaAAGTTTGGAGAGTCCGAGAAGTGCCCTCGATGTGGCAAGTCAGTCTATGCTGCTGAGAAGGTTATGGGAGGTGGCAAG___CCTTGGCACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGACAAAGATGGGGAACTTTATTGCAAAG___TTTGCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTACACAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26668 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240548:- chr11:19245610-19263167:- chr11:19262095:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19185045:- chr11:19203577-19232118:- chr11:19206592:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |LIM_domain(33%) |LIM(14%) 2 2 3 174 608 ENST00000250024.9 ENST00000533783.2 upstream downstream low_entropy(1) TGTGAACTGGCCACCCGAACAGGGAGTAAATAGTGCTTTGTATCTTTAAGGAAGCCCTTTTTTAAATTTAAAAAAAAAGTCTTAATTATAAGACTCTTTAA...GTGTGTGTAAGGGGAGAAATCCAGGCATCTAGATGCAGACTTGTACCCAGTTACTTGGGGTCGCGTGCGCTCAGCTGGGACCTGGGCTCGTGCGCTTAGTCCGGAGCCCTGATCTGCGAACAG|CCTTGGCACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGACAAAGATGGGGAACTTTATTGCAAAG___TTTGCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTACACAACAAG?GG...TTTTTTGCGAGCCTAAAACACTTGCCAAGTAATCCTGCACAGATCGATACCTTTCCCCAAATAGCCTCTCCTTTGTAGTCGTACATTATGTGTTTCTCCTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26669 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19240107:- chr11:19245610-19263167:- chr11:19261654:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19185045:- chr11:19203577-19232118:- chr11:19206592:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |LIM_domain(33%) |LIM(14%) 2 1 4 238 608 ENST00000527884.5 ENST00000533783.2 upstream downstream low_entropy(1),mismatches(3) CAG___GATATTAAAACTTTTAGTACAATTGATTGGACTACTTGAACCATCGGGATTTGGGGAGGAACTCCAGATTTTTCATTTTTAAACTCTAAATGTATGAGGAATTTACAGAATGGAGAACGAAAAG|CCTTGGCACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGACAAAGATGGGGAACTTTATTGCAAAG___TTTGCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTACACAACAAG?GG MENEK|PWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQ? NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26670 E2F8::CSRP3 ENSG00000129173.13::ENSG00000129170.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4486 TRUE 1699 E2F8 ENSG00000129173.13 protein_coding - - chr11:19224063-19241620:- chr11:19241497:- chr11:19245610-19263167:- chr11:19263044:- CSRP3 ENSG00000129170.10 protein_coding - - chr11:19182030-19210571:- chr11:19185045:- chr11:19203577-19232118:- chr11:19206592:- chr11:19239673,chr11:19239675 chr11:19206069,chr11:19206068 NA NA chr11:19261220,chr11:19261222 chr11:19227616,chr11:19227615 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion/read-through low none |LIM_domain(33%) |LIM(14%) 0 1 2 220 608 ENST00000527884.5 ENST00000533783.2 upstream downstream low_entropy(1) TGCTCCTGGACGGTCACGCTCCCTCTGCCCGCCAGCCGGCCCGCCAGTCCCGGTCCCGGCGTCTCTCTCCGGCACCCACCTCGGCGCTGCGGAAAGACTGACTGCCAG|CCTTGGCACAAGACCTGTTTCCGCTGTGCCATCTGTGGGAAGAGTCTGGAGTCCACAAATGTCACTGACAAAGATGGGGAACTTTATTGCAAAG___TTTGCTATGCCAAAAATTTTGGCCCCACGGGTATTGGGTTTGGAGGCCTTACACAACAAGTGGAAAtGAAAGAATGAAGAGGaGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26671 SEMA3F::GNAI2 ENSG00000001617.12::ENSG00000114353.17 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4487 TRUE 1700 SEMA3F ENSG00000001617.12 protein_coding + + chr3:50155045-50189075:+ chr3:50176861:+ chr3:50192478-50226508:+ chr3:50214294:+ GNAI2 ENSG00000114353.17 protein_coding + + chr3:50226292-50259362:+ chr3:50252100:+ chr3:50263724-50296794:+ chr3:50289532:+ chr3:50181789,chr3:50181789 chr3:50235219,chr3:50235213 NA NA chr3:50219222,chr3:50219222 chr3:50272651,chr3:50272645 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none Sema_domain(33%)|G-protein_alpha_subunit(91%) Sema(25%)|Arf(100%),G-alpha(18%) 45 93 50 468 2633 ENST00000413852.5 ENST00000422163.5 downstream upstream duplicates(12),low_entropy(2),mismappers(6),mismatches(9),multimappers(2) GGTGCCTACAACCCCATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAG___GATTACATCTTCTACCTGGAGCCTGAGCGACTCGAGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCATCA|GTGCTGGGGAGTCAGGGAAGAGCACCATCGTCAAGCAGATGAA___GATCATCCACGAGGATGGCTACTCCGAGGAGGAATGCCGGCAGTACCGGGCGGTTGTCTACAGCAACACCATCCAGTCCATCATGGCCATTGTCAAAGCCATGGGCAACCTGCAGATCGACTTTGCCG GAYNPMCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALI|sAGESGKSTIVKQMKIIHEDGYSEEECRQYRAVVYSNTIQSIMAIVKAMGNLQIDFA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26672 SEMA3F::GNAI2 ENSG00000001617.12::ENSG00000114353.17 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4487 TRUE 1700 SEMA3F ENSG00000001617.12 protein_coding + + chr3:50155045-50189075:+ chr3:50175188:+ chr3:50192478-50226508:+ chr3:50212621:+ GNAI2 ENSG00000114353.17 protein_coding + + chr3:50226292-50259362:+ chr3:50252100:+ chr3:50263724-50296794:+ chr3:50289532:+ chr3:50181789,chr3:50181789 chr3:50235219,chr3:50235213 NA NA chr3:50219222,chr3:50219222 chr3:50272651,chr3:50272645 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Sema_domain(26%)|G-protein_alpha_subunit(91%) Sema(11%)|Arf(100%),G-alpha(18%) 3 7 26 218 2633 ENST00000002829.8 ENST00000422163.5 downstream upstream mismatches(4) CCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAG___GCCACACCATGGACCCAGACTCAGGCGGTCAGAGGCCGCGGCAGCAGAGCCACGGATGGTGCCCTCCGCCCGATGCCCACAGCCCCACGCCAG|GTGCTGGGGAGTCAGGGAAGAGCACCATCGTCAAGCAGATGAA___GATCATCCACGAGGATGGCTACTCCGAGGAGGAATGCCGGCAGTACCGGGCGGTTGTCTACAGCAACACCATCCAGTCCATCATGG QPWNRTHLYVCGTGAYNPMCTYVNRGRRAQATPWTQTQAVRGRGSRATDGALRPMPTAPRQ|vlgsqgrapsssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26673 SEMA3F::GNAI2 ENSG00000001617.12::ENSG00000114353.17 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4487 TRUE 1700 SEMA3F ENSG00000001617.12 protein_coding + + chr3:50155045-50189075:+ chr3:50174350:+ chr3:50192478-50226508:+ chr3:50211783:+ GNAI2 ENSG00000114353.17 protein_coding + + chr3:50226292-50259362:+ chr3:50252100:+ chr3:50263724-50296794:+ chr3:50289532:+ chr3:50181789,chr3:50181789 chr3:50235219,chr3:50235213 NA NA chr3:50219222,chr3:50219222 chr3:50272651,chr3:50272645 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Sema_domain(19%)|G-protein_alpha_subunit(91%) Sema(4%)|Arf(100%),G-alpha(18%) 1 2 17 409 2633 ENST00000413852.5 ENST00000422163.5 downstream upstream mismatches(4) ATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAAC___GGCGAGTGTGGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAG|GTGCTGGGGAGTCAGGGAAGAGCACCATCGTCAAGCAGATGAA___GATCATCCACGAGGATGGCTACTCCGAGGAGGAATGCCGGCAGTACCGGGCGGTTGTCTACAGCAACACCATCCAGTCCATCATGGCCATTGTCAA...CCGAGGAGCAAGGCGTGCTCCCTGATGACCTGTCCGGCGTCATCCGGAGGCTCTGGGCTGACCATGGTGTGCAGGCCTGCTTTGGCCGCTCAAGGGAATAC IHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNPMCTYVNRGRRAQ|vlgsqgrapsssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26674 SEMA3F::GNAI2 ENSG00000001617.12::ENSG00000114353.17 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4487 TRUE 1700 SEMA3F ENSG00000001617.12 protein_coding + + chr3:50155045-50189075:+ chr3:50174114:+ chr3:50192478-50226508:+ chr3:50211547:+ GNAI2 ENSG00000114353.17 protein_coding + + chr3:50226292-50259362:+ chr3:50252100:+ chr3:50263724-50296794:+ chr3:50289532:+ chr3:50181789,chr3:50181789 chr3:50235219,chr3:50235213 NA NA chr3:50219222,chr3:50219222 chr3:50272651,chr3:50272645 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Sema_domain(11%)|G-protein_alpha_subunit(91%) Sema(2%)|Arf(100%),G-alpha(18%) 1 0 6 460 2633 ENST00000413852.5 ENST00000422163.5 downstream upstream none CTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCATT___ATACACTGGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTtAAC|GTGCTGGGGAGTCAGGGAAGAGCACCATCGTCAAGCAGATGAA___GATCATCCACGAGGATGGCTACTCCGAGGAGGAATGCCGGCAGTACCGGGCGGTTGTCTACAGCAACACCA MYVGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVN|vlgsqgrapsssr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26675 PAWR::ENSG00000257894 ENSG00000177425.11::ENSG00000257894.2 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4488 TRUE 1701 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ENSG00000257894 ENSG00000257894.2 lncRNA - - chr12:79341205-79503396:- chr12:79393925:- chr12:79734985-79897176:- chr12:79787705:- chr12:79670780,chr12:79670785 chr12:79460205,chr12:79460207 NA NA chr12:80064560,chr12:80064565 chr12:79853985,chr12:79853987 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none none none 13 21 11 162 98 ENST00000328827.9 ENST00000553165.1 upstream downstream low_entropy(1),mismappers(3),mismatches(1) CTGCACCGCCGCCCCAGCGTGACGAGGAGGAGCCGGACGGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|AAGGCAGAAGAAATCAGAGAGAAGGATGGAGTGGGGAAAAGAAGAGGGAGGCTGACAGAGAAGCTTAAAGAAATGCTTTCAGATGGCAACAAAAGCCAAAATAGACAAATGGGATTTAATTAAACGAAAGAGTTTCTGCACAGCAAAATAAACTATCATCAGCGTGAACAGGCAACCTACCGAATGGGAGAAAATTCTCACAATCTACCCATTTGACAAAAGGCTAATATCCAG APPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|kaeeirekdgvgkrrgrlteklkemlsdgnksqnrqmgfn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26676 PAWR::ENSG00000257894 ENSG00000177425.11::ENSG00000257894.2 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4488 TRUE 1701 PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ENSG00000257894 ENSG00000257894.2 lncRNA - - chr12:79341205-79503396:- chr12:79341409:- chr12:79734985-79897176:- chr12:79735189:- chr12:79670780,chr12:79670785 chr12:79460205,chr12:79460207 NA NA chr12:80064560,chr12:80064565 chr12:79853985,chr12:79853987 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none none none 2 1 0 162 5 ENST00000328827.9 ENST00000549527.1 upstream downstream none GGCGTCCCAGAGAAGGGCAAGAGCTCGGGCCCCAGTGCCAGGAAAGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGGCGCTCCACCGGCGTGGTCAACATCCCTGCCGCAGAG|TGACCTCAGAGTGACCTTGGAAGCTACATGCTGAAATGCTGAAGATGGCAGAGGTTCAGTGAGACAGGATCCTTGAAGATTTAAT GVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAE|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26679 NFIA::EHF ENSG00000162599.18::ENSG00000135373.13 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2455 TRUE 4490 TRUE 1702 NFIA ENSG00000162599.18 protein_coding + + chr1:60865259-61462788:+ chr1:61088680:+ chr1:61330931-61928460:+ chr1:61554352:+ EHF ENSG00000135373.13 protein_coding + + chr11:34621093-34663288:+ chr11:34651542:+ chr11:34642640-34684835:+ chr11:34673089:+ chr1:61218648,chr1:61218649 chr11:34649078,chr11:34649076 NA NA chr1:61684320,chr1:61684321 chr11:34670625,chr11:34670623 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman CTF/NF-I_family_transcription_modulation_region(0%),MH1_domain(100%),Nuclear_factor_I_protein_pre-N-terminus(100%)|Ets-domain(100%) CTF_NFI(0%),MH1(100%),NfI_DNAbd_pre-N(100%)|Ets(100%) 11 16 11 97 795 ENST00000371191.5 ENST00000257831.8 downstream upstream duplicates(1),mismatches(2) TGGTGATTTTGTTTAAAGGTATTCCGCTGGAAAGTACTGATGGCGAGCGCCTTGTAAAGTCCCCACAATGCTCTAATCCAGGGCTCTGTGTCCAACCCCATCACATAGGGGTTTCTGTTAAGGAACTCGATTTATATTTGGCATACTTTGTGCATGCAGCAG|AGCCTTCCATCATGAACACCTGGAAAGACGAGAACTATTTATATGACACCAACTATGGTAGCACAGTAG___ATTTGTTGGACAGCAAAACTTTCTGCCGGGCTCAGATCTCCATGACAACCACCAGTCACCTTCCTGTTG___CAGAGTCACCTGATATGAAAAAGGAGCAAGACCCCCC VILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA|ePSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSHLPVAESPDMKKEQDP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26680 NFIA::EHF ENSG00000162599.18::ENSG00000135373.13 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4490 TRUE 1702 NFIA ENSG00000162599.18 protein_coding + + chr1:60865259-61462788:+ chr1:61088680:+ chr1:61330931-61928460:+ chr1:61554352:+ EHF ENSG00000135373.13 protein_coding + + chr11:34621093-34663288:+ chr11:34656908:+ chr11:34642640-34684835:+ chr11:34678455:+ chr1:61218648,chr1:61218649 chr11:34649078,chr11:34649076 NA NA chr1:61684320,chr1:61684321 chr11:34670625,chr11:34670623 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium Mitelman CTF/NF-I_family_transcription_modulation_region(0%),MH1_domain(100%),Nuclear_factor_I_protein_pre-N-terminus(100%)|Ets-domain(100%) CTF_NFI(0%),MH1(100%),NfI_DNAbd_pre-N(100%)|Ets(100%) 0 1 4 97 758 ENST00000371191.5 ENST00000257831.8 downstream upstream mismatches(1) TGcAGGTTGGACCTgGTTATGGTGATTTTGTTTAAAGGTATTCCGCTGGAAAGTACTGATGGCGAGCGCCTTGTAAAGTCCCCACAATGCTCTAATCCAGGGCTCTGTGTCCAACCCCATCACATAGGGGTTTCTGTTAAGGAACTCGATTTATATTTGGCATACTTTGTGCATGCAGCAG|CAGAGTCACCTGATATGAAAAAGGAGCAAGACCCCCCTGCCAAGTGCCACACCAAAAAGCACA___ACCCGAGAGGGACTCACTTATGGGAATTCATCCGCGACATCCTCTTGAtCCCAGACAAGAACCCAGGATTAATAAAATGGGAtGAC cRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAA|aESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLiPDKNPGLIKWd NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26681 GAB1::ENSG00000250969 ENSG00000109458.10::ENSG00000250969.1 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GAB1 ENSG00000109458.10 protein_coding + + chr4:143336876-143474565:+ chr4:143337260:+ chr4:144258029-144395718:+ chr4:144258413:+ ENSG00000250969 ENSG00000250969.1 lncRNA + + chr4:143286293-143329858:+ chr4:143329279:+ chr4:144207446-144251011:+ chr4:144250432:+ chr4:143354059,chr4:143354059 chr4:143291156,chr4:143291153 NA NA chr4:144275212,chr4:144275212 chr4:144212309,chr4:144212306 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none PH_domain(17%)| PH(0%)| 5 18 9 103 59 ENST00000262994.9 ENST00000512715.1 downstream upstream duplicates(2) CCGCGCACCGTGGAGTCTGTCCGCCCAGTCCGTCCGGGGTGCGCGACCAGGAGAGCTAGGTTCTCGCCACTGCGCGCTCGGCAGGCGTCGGCTGTGTCGGGAGCGCGCCCGCCGCCCCTCAGCTGCCCGGCCCGGAGCCCGAGACGCGCGCACCATGAGCGGTGGTGAAGTGGTCTGCTCCGGATGGCTCCGCAAGTCCCCCCCGGAGAAAAAGTTGAAGCGTTAT|ACTATGGAAATGATGTTAGACAAAAAGCAAATTTAAGCGATTTTCTTATTTGAGTTCAAAATGGGTCATAAAGCAGTGGAGACAACTTGCAGCATCAACGAAGCGTTTGGCCCAGGAGCTGCTGACGAAGGTACGGTGCAGCGGGGGGTTCAAGAAGTTTTGCAAAGGAGATGAGAGCCTTGAAGGTGGAGAGTGTAGTGGCTGGCCATCGGAAGTTGACAGTGACCAACTGAG MSGGEVVCSGWLRKSPPEKKLKRY|tmemmldkkqi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26682 FLNB::FHIT ENSG00000136068.16::ENSG00000189283.11 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FLNB ENSG00000136068.16 protein_coding + + chr3:58008398-58172251:+ chr3:58156075:+ chr3:57994125-58157978:+ chr3:58141802:+ FHIT ENSG00000189283.11 protein_coding - + chr3:59747277-61251459:- chr3:60012939:+ chr3:59733003-61237133:- chr3:59998665:+ chr3:58158715,chr3:58158716 chr3:60002425,chr3:60002423 NA NA chr3:58144442,chr3:58144443 chr3:59988151,chr3:59988149 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Calponin_homology_(CH)_domain(100%),Filamin/ABP280_repeat(87%)| CH(100%),Filamin(77%)| 7 10 13 1087 74 ENST00000358537.7 unknown downstream upstream duplicates(2),mismatches(1) GCTGGAGGCCTCTCCATCGCTGTTGAGGGCCCCAGTAAGGCCGAGATTACATTCGATGACCATAAAAATGGGTCGTGCGGTGTATCTTATATTGCCCAAGAGCCTG___GTAACTACGAGGTGTCCATCAAGTTCAATGATGAGCACATCCCGGAAAGCCCCTACCTGGTGCCGGTCATCGCACCCTCCGACGACGCCCGCCGCCTCACTGTTATGAGCCTTCAG|TCTCTCCAGAAACACGGTTTGCAACATAAGCTTGATAAACCCACTCTGAACTGAACTACCTGCCTGAAGGGGACTCAAATGGTTTGACATACAACACATACACACAAAGCATTTGGGGGAAGTTTAGCTACTCTTAACACAGACATGGCAGCAAAAAAAGAAAGAAAAAAATCTGTTTGAGAAGAAGATGAGCACTTTTAGTCAGAGCCTTCATAACCTGAAAACACTGGCTTTCTTTATCTGGTCTCTTTGAAGCTCTATGGTAAAG AGGLSIAVEGPSKAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPVIAPSDDARRLTVMSLQ|slqkhglqhkldkptln* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26684 PARD3::CTNNA2 ENSG00000148498.17::ENSG00000066032.19 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34450317:- chr10:34398488-35104253:- chr10:34739245:- CTNNA2 ENSG00000066032.19 protein_coding + - chr2:79185231-80648861:+ chr2:79590817:- chr2:79412357-80875986:+ chr2:79817943:- chr10:34430754,chr10:34430764 chr2:79603150,chr2:79603157 NA NA chr10:34719682,chr10:34719692 chr2:79830276,chr2:79830283 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none N-terminal_of_Par3_and_HAL_proteins(100%)| Par3_HAL_N_term(100%)| 3 3 13 326 34 ENST00000545693.5 unknown upstream downstream duplicates(2),mismatches(1) GAAAAATCCCACACGCTGGTCAACAACAGCTGGCTTCCTCAAGCAGAACACTGCTGGGAGTCCTAAAACCTGCGACAGGAAG___AAAGATGAAAACTACAGAAGCCTCCCGCGGGATACTAGTAACTGGTCTAACCAATTTCAGAGAGACAATGCTCGCTCGTCTCTGAGTGCCAGTCACCCAATGGTGGGCAAGTGGCTGGAGAAACAAGAACAG|ATAAAACACAGTGCTGTTTTCTCATCAGATAAGTTGTGGAAAAGCAAACTACTGGTATTGCAAGACAACAATGTTTATTGCAGCTCTAGTTACCTGCAACATGAAAAAAACGTAAAAGGGCCAATATTTCATATAAACAGGACTTTGTCAGCCATAGAAAAGGTTGTATCCTAACACAGCAAATCTGATGTTTTTTTTTAATAAAGG KNPTRWSTTAGFLKQNTAGSPKTCDRKKDENYRSLPRDTSNWSNQFQRDNARSSLSASHPMVGKWLEKQEQ|ikhsavfssdklwkskllvlqdnnvycsssylqheknvkgpifhinrtlsaiekvvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26688 MYO5B::CFAP53 ENSG00000167306.21::ENSG00000172361.6 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4491 TRUE 1703 MYO5B ENSG00000167306.21 protein_coding - - chr18:49822789-50195164:- chr18:50194767:- chr18:47349159-47721534:- chr18:47721137:- CFAP53 ENSG00000172361.6 protein_coding - - chr18:50227193-50266495:- chr18:50251784:- chr18:47753563-47792865:- chr18:47778154:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Trichohyalin-plectin-homology_domain(99%) |TPH(72%) 2 2 5 26 7 ENST00000285039.12 ENST00000398545.5 upstream downstream duplicates(1) GAGGGGAGTGGTGCGGCGCGGCCTCCTCCCCCGGCGCTCGCAACTCCTGTCCGGCCGTAGCTGCGCCGCCGCGGCGGGAGTAAAGGTCGCGCCGCCGGGAGCGAGCCGGCCGCGGCGCC...GAAACTCCAGGCCAGCCCGGGAACATGGCGCCAGGCGGGCCAGCCGCGGACTGAGAGCCGCGGGGCAGCCAGGAGCCGGGGCCCGAGCCCCGCCCGGCCCGGGCCATGTCGGTGGGCGAGCTCTACAGCCAG|GGAACGCTGTGAGGAGCTCCGTGTTGAATTGTTATCTATCCATCAGAAGAAGGTGTGTGAGG...CAGATTGCATTTAATGAGGAGCTGAGCAGGCAAAAGCTGGTGGAAGAGCAGATGTTCTCCAAACTCTGGGAGGAAGACCGATTAGCCAAGGAAAAGCGAGAAGCCCAAGAGGCGAGGAGACAGAAAGAGCTGATGGAGAACACACGCCTGGGGCTGAATGCCCAGATCACCAGCATCAAG MSVGELYSQ|gtl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26689 MYO5B::CFAP53 ENSG00000167306.21::ENSG00000172361.6 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4491 TRUE 1703 MYO5B ENSG00000167306.21 protein_coding - - chr18:49822789-50195164:- chr18:50194767:- chr18:47349159-47721534:- chr18:47721137:- CFAP53 ENSG00000172361.6 protein_coding - - chr18:50227193-50266495:- chr18:50250976:- chr18:47753563-47792865:- chr18:47777346:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Trichohyalin-plectin-homology_domain(69%) |TPH(69%) 0 1 4 26 17 ENST00000285039.12 ENST00000398545.5 upstream downstream none TGCGGCGCGGCCTCCTCCCCCGGCGCTCGCAACTCCTGTCCGGCCGTAGCTGCGCCGCCGCGGCGGGAGTAAAGGTCGCGCCGCCGGGAGCGAGCCGGCCGCGGCGCC...GAAACTCCAGGCCAGCCCGGGAACATGGCGCCAGGCGGGCCAGCCGCGGACTGAGAGCCGCGGGGCAGCCAGGAGCCGGGGCCCGAGCCCCGCCCGGCCCGGGCCATGTCGGTGGGCGAGCTCTACAGCCAG|GAAAGTAACAACGCACAGATTAAACATGAGAATGAACAGGATATGCTAAAGAAACAGAAGGCAAAGCAGGAAACTAGGACCATTTTGCAAAAAGCCCTACAAGAGAGGATAGAACATATTCAGCAGGAATACAGAGACGAACAGGACTTGAACATGAAGCTCGTGCAAAGGGCCCTTCAAGACTTACAGGAAGAGGCAGATAAAAAGAAACAAAAAAGA___GAAGATATGATAAGAGAACAGAAGATATACCATAAATATTTGGCACAGAGACGTGAGGAAGAAAAAGC MSVGELYSQ|ESNNAQIKHENEQDMLKKQKAKQETRTILQKALQERIEHIQQEYRDEQDLNMKLVQRALQDLQEEADKKKQKREDMIREQKIYHKYLAQRREEEK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26691 UBE2E2::LINC01378 ENSG00000182247.11::ENSG00000236922.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2E2 ENSG00000182247.11 protein_coding + + chr3:23203020-23591794:+ chr3:23203262:+ chr3:23244511-23633285:+ chr3:23244753:+ LINC01378 ENSG00000236922.10 lncRNA + + chr4:117406166-117691188:+ chr4:117654807:+ chr4:118327322-118612343:+ chr4:118575962:+ chr3:23204696,chr3:23204697 chr4:117580762,chr4:117580760 NA NA chr3:23246187,chr3:23246188 chr4:118501917,chr4:118501915 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 2 1 254 5 ENST00000425792.5 ENST00000422145.7 downstream upstream low_entropy(1) CTCGCGGGTGCGCGCGCGGACGGCCGGGCGGCGGCGGCTCCCGGAGGTGGTGGCTTCACTTTCCAGGACTCAGGGGCAGCCACAGCGACAGCCGCGGGCAGCAGCCTCAGGAGCCGGAGCTGGAACGGCCGGGGGCGGCGGCAGCGGCGGCGCTGAGG|TCTCGAGTATAAAGAAGAGGATGAAGGCTTAAGCAGGAAACTTTGACAGCTCCAAAGACCTTAATCCTTATAAAGAAG...CATAGCATTTTGAGGAGTAAAAGTGACACCTGGAAAAAGCCATCCTTGAGAACTAACTCCCCACAAACTGATCAGATGTCACAACTGTGATTTTTCTTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26692 MAP2K6::ARHGAP27P2 ENSG00000108984.16::ENSG00000267472.1 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAP2K6 ENSG00000108984.16 protein_coding + + chr17:69414697-69553865:+ chr17:69505846:+ chr17:67410838-67550006:+ chr17:67501987:+ ARHGAP27P2 ENSG00000267472.1 processed_pseudogene + + chr17:68198921-68199596:+ chr17:68199171:+ chr17:66195062-66195737:+ chr17:66195312:+ chr17:69514906 chr17:68199170 chr17:69514908,chr17:69514907 chr17:68199175,chr17:68199175 chr17:67511047 chr17:66195311 chr17:67511049,chr17:67511048 chr17:66195316,chr17:66195316 sense sense out-of-frame CDS/splice-site exon duplication high none none none 2 1 0 13 42 ENST00000590474.7 ENST00000589904.1 downstream upstream duplicates(1),mismatches(1) AGAAACTCCACTTGCATGAAGATTGCACGCCTGCAGCTTGCATCTTTGTTGCAAAACTAGCTACAGAAGAGAAGCAAGGCAAAGTCTTTTGTGCTCCCCTC...CTCAGTCGAAAG___GCAAGAAGCGAAACCCTGGCCTTAAAATTCCAAAAGAAGCATTTGAACAACCTCAGACCAGTTCCAC|CAACCTGCCACTGCCGCGCCGCCAGGTCCCCCCAACAGTCCCCTCGGCCCCCGA...ACTACgGGCTgGgGgGCGCGGCGGCGGCAGCGGGCCCCGACAGCACCCCCGCGGAGCCCCGAGGCCGCGCCAGCTCCCTGTGCGGCCCTTCGCAACGCGGCGCCGCGACCCAGCGCAGC QSKGKKRNPGLKIPKEAFEQPQTSSt|nlplprrqvpptvpsap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Dual specificity mitogen-activated protein kinase kinase 6 STE STE7 P52564 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26693 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4492 TRUE 1704 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188154252:+ chr3:187871072-188608460:+ chr3:187872040:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189000774:+ chr3:188665003-189043093:+ chr3:188718563:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion high none |Inositol_phosphatase_(100%) |hSac2(100%) 0 1 2 60 37 ENST00000617246.5 ENST00000433971.5 downstream upstream none GCCACCACCACCGCCGCTGCCCCGGCTGCCTCCTCCCTGAG|GATCTCACTCTGTTGCCTAGGCTGGAATGTGGTGGCATGATCACAGCTCACTGCAGCCACAgATTCCTGGGCTCAAGCAATCCTCCTGCTTCAGCCTCCTGAGTAGCTGGGACTATAGGCAAGCGCTACTGTGCTCAG___GTCCATCATGCCTAAATACAATCTCTATGCCTTGTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26694 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4492 TRUE 1704 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188154021:+ chr3:187871072-188608460:+ chr3:187871809:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189004543:+ chr3:188665003-189043093:+ chr3:188722332:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Inositol_phosphatase_(100%) |hSac2(100%) 0 2 0 74 27 ENST00000414139.6 ENST00000433971.5 downstream upstream none CCCGCGCGAGCTTTCCCGGGATAAGTAGCTTTAGCGATCGGGAGACAGCCGGGCGCTGCAAG|CTCTCACTCTCTGGCTGAATGTAGAGGACTCTGAAGGCTTAGGCAAGAGGGGAGTTATAAGGCACCACAGAACCCTGAATGACTGCATGGAGCAGAACCCTTCGCAAACCTGCTCTTCAGGCCTCCTTTTTGAGAC...CTCTTCACTCCGTAGAGTCCTCAGAGTCTGGATCATCCCTTACAGAAGATCCTTGATAATATTTCTGATATACCTCCAAG___GGCCTTGTGTTAGGCATTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26695 LPP::TPRG1 ENSG00000145012.15::ENSG00000188001.10 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4492 TRUE 1704 LPP ENSG00000145012.15 protein_coding + + chr3:188153284-188890671:+ chr3:188154252:+ chr3:187871072-188608460:+ chr3:187872040:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189023750:+ chr3:188665003-189043093:+ chr3:188741539:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site deletion low none |Inositol_phosphatase_(100%) |hSac2(100%) 0 1 0 60 19 ENST00000617246.5 ENST00000433971.5 downstream upstream none CACCGCCGCTGCCCCGGCTGCCTCCTCCCTGAG|GGCTGCTGCAGTTTGCGGGGTTCTTCTCCAGACCATAGATGCCTCAGTTTTTGCAGTACCTGGAGGTT...GGGGTGTACAGAACTGTTGCTGGCCTGAATACACCTGCATGAGGTGGCTGAAGACTCCAGTTG___GATTATTTATGAGGATGGCCTGTGCAAAAAGACACCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LIM domain containing preferred translocation partner in lipoma 1 lipoma, leukaemia leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26710 MLKL::GLG1 ENSG00000168404.13::ENSG00000090863.12 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2456 FALSE NA FALSE NA MLKL ENSG00000168404.13 protein_coding - - chr16:74671855-74700960:- chr16:74674960:- chr16:74705753-74734858:- chr16:74708858:- GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74532153:- chr16:74481325-74641042:- chr16:74566051:- chr16:74674811,chr16:74674816 chr16:74579792,chr16:74579794 NA NA chr16:74708709,chr16:74708714 chr16:74613690,chr16:74613692 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Protein_kinase_domain(97%)|Cysteine_rich_repeat(99%) PK_Tyr_Ser-Thr(87%),Pkinase(87%)|Cys_rich_FGFR(46%) 2 4 5 126 548 ENST00000308807.12 ENST00000205061.9 upstream downstream mismappers(1) CAAGCTGGTGGCTGTGAAGCGGCAGCAGGAGCCACTGGGTGAAGACTGCCCTTCAGAGCTGCGGGAGATCATTGATGAGTGCCGGGCCCATGATCCCTCTGTGCGGCCCTCTGTGGATG|CCTGAAAATGAAATTTCTTCAGACTGCAATCAT___TTGTTGTGGAATTATAAGCTGAACCTAACTACAGATCCCAAATTTGAATCTGTGGCCAGAGAGGTTTGCAAATCTACTATAACAGAG___ATTAAAGAATGTGCT KLVAVKRQQEPLGEDCPSELREIIDECRAHDPSVRPSVD|a* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mixed lineage kinase domain-like protein TKL TKL-Unique Q8NB16 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26727 BMAL2::ODF2-AS1 ENSG00000029153.15::ENSG00000225951.1 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4497 TRUE 1705 BMAL2 ENSG00000029153.15 protein_coding + + chr12:27332836-27425289:+ chr12:27333103:+ chr12:27485769-27578222:+ chr12:27486036:+ ODF2-AS1 ENSG00000225951.1 lncRNA - - chr9:128468957-128473012:- chr9:128469283:- chr9:131231236-131235291:- chr9:131231562:- chr12:27352180,chr12:27352181 chr9:128470871,chr9:128470871 NA NA chr12:27505113,chr12:27505114 chr9:131233150,chr9:131233150 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none none none 1 0 0 117 428 ENST00000266503.10 ENST00000420801.1 downstream downstream none CAGAGCCGCCGCCTGGGCCGGGGCAGGGCGGGCCCGGGGCTCCTCCATGCTGCCAGCCGCGGGGCTGCGGAGCCGACCAAGTGGCTCCTGCGATGGCGGCG...GGAGGCTGCGGCGGGAG|TGACCTGAGTCATCATCTTCTGTAGAGAGGTCACTTAACCGCATCACTGAGACCAGCTTTTCTGAAGATGGTGGCGTGATCTCC EAAAG|vt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26728 BMAL2::ODF2-AS1 ENSG00000029153.15::ENSG00000225951.1 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4497 TRUE 1705 BMAL2 ENSG00000029153.15 protein_coding + + chr12:27332836-27425289:+ chr12:27333137:+ chr12:27485769-27578222:+ chr12:27486070:+ ODF2-AS1 ENSG00000225951.1 lncRNA - - chr9:128468957-128473012:- chr9:128469282:- chr9:131231236-131235291:- chr9:131231561:- chr12:27352180,chr12:27352181 chr9:128470871,chr9:128470871 NA NA chr12:27505113,chr12:27505114 chr9:131233150,chr9:131233150 NA NA sense sense out-of-frame intron exon/splice-site translocation low none none none 0 1 0 14 428 ENST00000546179.5 ENST00000420801.1 downstream downstream none CGAGGCGACGGCCCCAGG|GACCTGgGTCATCATCTTCTGTAGtGAGGaCACTTAACCGCATCACTGAGACCAGCTTTTCTGAAGATGGTGGCGTGATCTCC...CATGAACTCAGAAGGCAGAACCTTGACCACGAGTTCCACCACTGGAGGCTTATTTACTGATTAGACGGGAAAAGCTGTAACAGCTAACTCGGGGACCCCAG EATAPg|twviifcsedt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26740 ATP5IF1::SLC9A7 ENSG00000130770.18::ENSG00000065923.10 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP5IF1 ENSG00000130770.18 protein_coding + - chr1:28236109-28246906:+ chr1:28246576:- chr1:28562620-28573417:+ chr1:28573087:- SLC9A7 ENSG00000065923.10 protein_coding - - chrX:46599251-46759118:- chrX:46607203:- chrX:46458686-46618553:- chrX:46466638:- chr1:28244884,chr1:28244886 chrX:46610122,chrX:46610121 NA NA chr1:28571395,chr1:28571397 chrX:46469557,chrX:46469556 NA NA antisense sense unknown intron CDS/splice-site translocation/3'-3' high none none none 83 101 95 826 658 unknown ENST00000616978.5 upstream downstream duplicates(26),low_entropy(1),mismappers(1),mismatches(122) TTTTTTTCCGTCTCTGTGTTTTTCAATGTTTTTCAGGCCTTCTGTCTTGAGCTCGTATTACTGCTGTTCACTGATGTATTGTAAAAGCGTAAAACCGGACGTGACCCAAATGTCTATCAAAGGAGACTGATGAGAGAAATAAACGGATTTGTTCACACAACGGCTTCTACAGCAAAGAAACAGAAGGTAGCTCCAAGTGCTCTGAAATGGAAAG|AACCAAGAGCCACTGAGAGAGGAAGACTCTGATTTCATCCTGACCGAAGGCGACCTGACATTGACCTACGGGGACAGCACAGTGACTGCAAATGGCTCCTCAAGTTCGCACACCGCCTCCACGAGTCTGGAGGGCAGCCGGAGAACGAAGAGCAGCTCGGAGGAAGTGCTGGAGCGAGACCTGGGAATGGGAGACCAGAAGGTTTCGAGCCGGGGCACCCGCCTAGTGTTTCCCCTGGAAGATAATGCTTGACTTTCCCCCCAAGCCCTGGCGCGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26741 SLC9A7::ALDH7A1 ENSG00000065923.10::ENSG00000164904.18 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2457 FALSE NA FALSE NA SLC9A7 ENSG00000065923.10 protein_coding - - chrX:46599251-46759118:- chrX:46613289:- chrX:46458686-46618553:- chrX:46472724:- ALDH7A1 ENSG00000164904.18 protein_coding - - chr5:126531200-126595362:- chr5:126550293:- chr5:125866892-125931054:- chr5:125885985:- chrX:46610269,chrX:46610273 chr5:126550782,chr5:126550783 NA NA chrX:46469704,chrX:46469708 chr5:125886474,chr5:125886475 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Sodium/hydrogen_exchanger_family(100%)|Aldehyde_dehydrogenase_family(16%) Na_H_Exchanger(100%)|Aldedh(8%) 45 59 105 374 1119 ENST00000616978.5 ENST00000637782.1 upstream downstream duplicates(10),mismatches(27),multimappers(1) GACGGCCCAGATTCTGCCAGAGGAAACCGGACAAAACAGGAGAGCGCATGGATATTCAGGCTGTGGTACAGCTTTGATCACAA___TTACCTGAAGCCCATCCTCACACACAGTGGTCCCCCACTAACCACCACGCTCCCCGCCTGGTGTGGCTTACTAGCTCGATGTCTGACCAGTCCCCAGGTGTACGAT|AATGAAGAAGAGGTCTTTGCATGGAATAATGAAGTAAAACAGGGACTTTCAAGTAGCATCTTTACCAAAGATCTGGGCAGAATCTTTCGCTGGCTTGG___ACCTAAAGGATCAGACTGTGGCATTGTAAATGTCAACATTCCAACAAGTGGGGCTGAGATTGGAGGTGCCTTTG___GAGGAGAAAAGCACACTGGTGGTGGCAGG DGPDSARGNRTKQESAWIFRLWYSFDHNYLKPILTHSGPPLTTTLPAWCGLLARCLTSPQVYD|NEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26742 GSE1::EMC8 ENSG00000131149.19::ENSG00000131148.9 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GSE1 ENSG00000131149.19 protein_coding + + chr16:85169525-85676204:+ chr16:85371278:+ chr16:85203131-85709810:+ chr16:85404884:+ EMC8 ENSG00000131148.9 protein_coding - + chr16:85771758-85799608:- chr16:85796155:+ chr16:85805364-85833214:- chr16:85829761:+ chr16:85523559,chr16:85523554 chr16:85795177,chr16:85795169 NA NA chr16:85557165,chr16:85557160 chr16:85828783,chr16:85828775 NA NA sense antisense unknown intron intron deletion/5'-5' high none none none 35 53 37 1075 299 unknown unknown downstream upstream duplicates(7),low_entropy(1),mismatches(15) CTGGAGGGAGCCGGAGGCGTCCTCTTCTCCTCCCACCCTCGCTGCTCCGCCCCCCTCGTTCCTTCCCCAGGCCAAGGGGAGCTGACTGATGACCGAGGCCACCGCTGCTCCTCGGGCTACCAGGCCAGGGCAGGGGGGCCAGGGGCTGGGCCAGGCAGTGCTCATGGACCAGAAGAGCCCCAAGTGGAAAGTGCTCCTGCCGG|GACTTCTTCATTTGAACATCTCAAACTTAACATACCCCAAACAGAAGTAATCACCTCCCCTCCAGACCTGTTTCTCTGCCTCTTCCCTCAACAAATGGCACCAGTGCACCATCGTCCCAGCGCACAAGCCAGGAACCTAG___CTCAGGCACATTCAATCAAGGGGAGCCAGGCCTAAGATGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-12128 chr16:85207796-85207895:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26743 METTL15::ENSG00000289526 ENSG00000169519.21::ENSG00000289526.2 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA METTL15 ENSG00000169519.21 protein_coding + + chr11:28108248-28527041:+ chr11:28296931:+ chr11:28129795-28548588:+ chr11:28318478:+ ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35014618:- chr11:35035622-35088739:- chr11:35036165:- chr11:28325324,chr11:28325325 chr11:35015462,chr11:35015461 NA NA chr11:28346871,chr11:28346872 chr11:35037009,chr11:35037008 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none MraW_methylase_family(56%)| Methyltransf_5(76%)| 15 15 13 454 27 ENST00000406787.7 ENST00000702237.1 downstream downstream duplicates(1),mismatches(3) TTGGACATGAGAATGGATGGTGGCAG___ATCAACAGGCACTTGCATCTATCCTAAGAACATACGGGGAGGAGAAGCATGCCAAGAAAATCGCTTCAGCAATTGTTCAGGCACGCAGCATCTACCCCATCACCAGAACCCAGCAGCTTGCCAGCATCGTTGCAG|GAATGAAGCATCCACACAGTCCATCCAAGCATACTGTGAATCAAAACACATGTCATAGCTGGAACGAAAGCATTAGGACCATCTAACTGGATTCCACTGGAATGAGTCTCTGTGAAACCATGCCGAAGTCTTTGTAAACAACCACCCTAAAGAAAGCTACATGAAGAATAGCCAATAACAAAAGCAC LDMRMDGGRSTGTCIYPKNIRGGEACQENRFSNCSGTQHLPHHQNPAACQHRCr|neastqsiqayceskhms* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26744 CHSY1::FKBP9 ENSG00000131873.7::ENSG00000122642.11 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHSY1 ENSG00000131873.7 protein_coding - - chr15:101175727-101252048:- chr15:101235082:- chr15:101715932-101792253:- chr15:101775287:- FKBP9 ENSG00000122642.11 protein_coding + - chr7:32957404-33006930:+ chr7:32993131:- chr7:32997016-33046542:+ chr7:33032743:- chr15:101210238,chr15:101210241 chr7:33006720,chr7:33006720 NA NA chr15:101750443,chr15:101750446 chr7:33046332,chr7:33046332 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Chondroitin_N-acetylgalactosaminyltransferase(6%)| CHGN(0%),Fringe(22%)| 7 14 10 325 76 ENST00000254190.4 unknown upstream downstream duplicates(1),mismatches(4) CAGGCCTGGGCACCACGGAAGAAATGGGAAAACTGGCCCTGGAGCCTGGTGAGAACTTCTGCATGGGGGGGCCTGGCGTGATCATGAGCCGGGAGGTGCTTCGGAGAATGGTGCCGCACATTGGCAAGTGTCTCCGGGAGATGTACACCACCCATGAGGACGTGGAGGTGGGAAGGTGTGTCCGGAGGTTTGCAGGGGTGCAGTGTGTCTGGTCTTATGAG|ATGCATTCAGGTGCAGGGCCTTCTCCAGGGCAAAAGGGAATGCATCTGGAACCACCCACATCCCTGGGATCTGATGTCAGCAGTCAAATGAACTCAGCCTCTCAGGCCCCGAGGATTCCAGGCACAAGAATTCCAACCAGTGTAGAGGTCGATTCACACCCAGT GLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYE|mhsgagpspgqkgmhlepptslgsdvssqmnsasqapripgtriptsvevdshp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26746 PHETA1::LINC02356 ENSG00000198324.14::ENSG00000257595.3 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PHETA1 ENSG00000198324.14 protein_coding - - chr12:111360651-111369121:- chr12:111368912:- chr12:111798455-111806925:- chr12:111806716:- LINC02356 ENSG00000257595.3 lncRNA + - chr12:111369261-111403310:+ chr12:111387642:- chr12:111807065-111841114:+ chr12:111825446:- chr12:111367398,chr12:111367402 chr12:111387937,chr12:111387938 NA NA chr12:111805202,chr12:111805206 chr12:111825741,chr12:111825742 NA NA sense antisense unknown 5'UTR/splice-site intron duplication/5'-5' high none none none 0 8 2 102 18 ENST00000361483.4 unknown upstream downstream mismatches(1) CCGCCACCGGGCCAGTCCCGAACCATGGCCGGGCCACCCCGCAACCTCGCGCCTCCCGTCCCGTCGCCGCCCTAGGCCTGCGCTGCGAG|CCACAAAGATGCCTGGGTGTTCACAGTAGCCCAAACGGAGACACCCTGCGGTCCTCAATGGATGGATGGATGGATAAACCAAAGGTGGCATATCTGGCCAGcTGCAGTGGCTCACACCTGTAATTCCAGCACTTTGAGAGGCCAAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26752 IFT140::ERN1 ENSG00000187535.14::ENSG00000178607.17 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4502 TRUE 1706 IFT140 ENSG00000187535.14 protein_coding - - chr16:1510427-1612072:- chr16:1580759:- chr16:1560428-1662073:- chr16:1630760:- ERN1 ENSG00000178607.17 protein_coding - - chr17:64039080-64130819:- chr17:64057993:- chr17:62116440-62208179:- chr17:62135353:- chr16:1579643,chr16:1579650 chr17:64059562,chr17:64059566 NA NA chr16:1629644,chr16:1629651 chr17:62136922,chr17:62136926 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Protein_kinase_domain(100%),Ribonuclease_2-5A(100%) ANAPC4_WD40(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ribonuc_2-5A(100%) 2 1 1 208 16 ENST00000426508.7 ENST00000680433.1 upstream downstream duplicates(1) CAAG___GATGCTGTCGCAGTCTGGAACGGAAGGCAGGTGGCGATCTTCGAGCTTTCTGGAGCCGCGATACGGAGTGCAG___GGACCTTCTTGTGTGAGACGCCTGTGTTAGCAATGCATGAAGAAAACGTTTACACGGTGGAGTCAAACCGAGTTCAAGTTCGAACCTGGCAG|GTTATCAACCTGGTTGACCAGACTTCAGAAAACGCACCTACCACCGTGTCTCGGGATGTGGAGGAGAAGCCCGCCCATGCCCCTGCCCGGCCCGAGGCCCCCGTGGACTCCATGCTTAAGGACATGGCTACCATCATCCTGAGCACCTTCCTG KDAVAVWNGRQVAIFELSGAAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQ|VINLVDQTSENAPTTVSRDVEEKPAHAPARPEAPVDSMLKDMATIILSTF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase/endoribonuclease IRE1 Other IRE O75460 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26753 IFT140::ERN1 ENSG00000187535.14::ENSG00000178607.17 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4502 TRUE 1706 IFT140 ENSG00000187535.14 protein_coding - - chr16:1510427-1612072:- chr16:1580759:- chr16:1560428-1662073:- chr16:1630760:- ERN1 ENSG00000178607.17 protein_coding - - chr17:64039080-64130819:- chr17:64054828:- chr17:62116440-62208179:- chr17:62132188:- chr16:1579643,chr16:1579650 chr17:64059562,chr17:64059566 NA NA chr16:1629644,chr16:1629651 chr17:62136922,chr17:62136926 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |Protein_kinase_domain(100%),Ribonuclease_2-5A(100%) ANAPC4_WD40(100%)|PK_Tyr_Ser-Thr(100%),Pkinase(100%),Ribonuc_2-5A(100%) 0 1 0 208 28 ENST00000426508.7 ENST00000680433.1 upstream downstream none ACCGAGTTCAAGTTCGAACCTGGCAG|ATGAGGAAACCAGCGTGGTaATAGTTGGGAAAATTTCCTTCTGTCCCAAGGATGTCCTGGGCCATGGAGCTGAGGGCACAATTGTGgACCGG RVQVRTWQ|mrkpaw* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase/endoribonuclease IRE1 Other IRE O75460 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26764 CHN2::RALY ENSG00000106069.26::ENSG00000125970.12 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4503 TRUE 1707 CHN2 ENSG00000106069.26 protein_coding + + chr7:29146547-29514328:+ chr7:29367987:+ chr7:29186163-29553944:+ chr7:29407603:+ RALY ENSG00000125970.12 protein_coding + + chr20:33993646-34108308:+ chr20:34031522:+ chr20:32581452-32696114:+ chr20:32619328:+ chr7:29395948,chr7:29395946 chr20:34000878,chr20:34000860 NA NA chr7:29435564,chr7:29435562 chr20:32588684,chr20:32588666 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%),RRM_5(100%),eIF-5_eIF-2B(100%) 0 3 1 58 2117 ENST00000446446.6 ENST00000375114.7 downstream upstream none CCTCCTATATGGAAATCATACT___TATATCAGTTACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAG|GTGAGCCCTATTCCCAGAGGCAGGTGGTGCTGACCCTGTAACCCAAAGGAGGAAACAGCTGGCTAAGCTCATCATTGTTACTG___GTGGGCACCATGTCCTTGAAGCTTCAGGCAAGCAATGTAACCAACAAGAATGACCCCAAGTCCATCAACTCTCGAGTCTTCATTGGAAACCTCAACACAGCTCTGGTGAAGAAATCAGATGTGGAGACCATCTTCTCTAAGTATGGCCGTGTGcCCGGCTGTTC PPIWKSYLYQLQQEAPRPKRIICPRE|vspiprgrwc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4755 chr20:34049119-34049190:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26765 CHN2::RALY ENSG00000106069.26::ENSG00000125970.12 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4503 TRUE 1707 CHN2 ENSG00000106069.26 protein_coding + + chr7:29146547-29514328:+ chr7:29393710:+ chr7:29186163-29553944:+ chr7:29433326:+ RALY ENSG00000125970.12 protein_coding + + chr20:33993646-34108308:+ chr20:34031522:+ chr20:32581452-32696114:+ chr20:32619328:+ chr7:29395948,chr7:29395946 chr20:34000878,chr20:34000860 NA NA chr7:29435564,chr7:29435562 chr20:32588684,chr20:32588666 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation medium none |RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%) |RRM_1(100%),RRM_5(100%),eIF-5_eIF-2B(100%) 2 1 1 64 2117 ENST00000446446.6 ENST00000375114.7 downstream upstream none CAGCCTCCTATATGGAAATCATACT___TATATCAGTTACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAG___GTGGAAAACAGACCAAAATATTATGGAAGAGA|GTGAGCCCTATTCCCAGAGGCAGGTGGTGCTGACCCTGTAACCCAAAGGAGGAAACAGCTGGCTAAGCTCATCATTGTTACTG___GTGGGCACCATGTCCTTGAAGCTTCAGGCAAGCAATGTAACCAACAAGAATGACCCCAAGTCCATCAgCTCTCGAGTCTTCATTGGAAAC QPPIWKSYLYQLQQEAPRPKRIICPREVENRPKYYGRe|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4755 chr20:34049119-34049190:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26773 CACNA2D2::HYAL1 ENSG00000007402.12::ENSG00000114378.17 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CACNA2D2 ENSG00000007402.12 protein_coding - - chr3:50362613-50504244:- chr3:50493440:- chr3:50400044-50541675:- chr3:50530871:- HYAL1 ENSG00000114378.17 protein_coding - - chr3:50299890-50312381:- chr3:50303953:- chr3:50337321-50349812:- chr3:50341384:- chr3:50492370,chr3:50492370,chr3:50492373,chr3:50492373,chr3:50492373 chr3:50307810,chr3:50307811,chr3:50307809,chr3:50307808,chr3:50307810 NA NA chr3:50529801,chr3:50529801,chr3:50529804,chr3:50529804,chr3:50529804 chr3:50345241,chr3:50345242,chr3:50345240,chr3:50345239,chr3:50345241 NA NA sense sense unknown intron 5'UTR/splice-site deletion/read-through low none |Hyaluronidase(100%) |Glyco_hydro_56(100%) 1 3 0 26 23 unknown ENST00000320295.12 upstream downstream mismatches(2) TTCaCCTCCTGCTGGCCCCGCCTAAAACGCTGCATTTGAAGCCTTAAAG___GGAGCCAACAGGTGTGTGATGCGGCTGCTGGCAAAGACCAAGTGGTCACCTG...CTTGGCCAACTTACTGCATGGCAACAAGATGGCTGCCACAGCTCCAGGCATCATCTGCAGACCCAG|GAGGAAAAGATCCACGAAAGTAAAGTGCCTAGGGCCCATCAATGTCAGATGCAGCCACGTGGACAAAGAACACTCCCTGAGCACAAGACACGAAAGAACCCGGTCTCCAGTGTCACAAACAGGCCTGCCCAGCAGGGTCTGCCCCTGCCCACCTCCTCCAGCCTAG___GTTGTCCTCGACCAGTCCCGTGCCATGGCAGCCCACCTGCTTCCCATCTGCGCCCTaaTCCTGcCCTTACTCGATATGGCCCcAGGCTTTtGGGGCCCCTTGCTACCCAACCGGCCCTTCACCACCGTCTGGAATGCAAACgCCCAG...TGGACGTGGATGTCgGTGTCTTCGATGTGGTAGCCAACCCAGGGCAGACCTTCCGCGGCCCTGACATGACAATTTTCTATAGCTCCCAGCTGGGCACCTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26795 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2459 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 93 90 170 1294 935 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(21),inconsistently_clipped(2),mismatches(41) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26796 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2460 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 47 29 211 1294 107 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(16),mismatches(42) AGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26797 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2461 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 12 30 177 168 935 ENST00000662410.1 ENST00000502082.5 downstream downstream duplicates(12),mismatches(30) GGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26798 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 2 9 185 49 935 ENST00000656491.1 ENST00000502082.5 downstream downstream duplicates(15),mismatches(27) CCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26799 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 5 6 180 58 935 ENST00000651587.1 ENST00000502082.5 downstream downstream duplicates(12),mismatches(27) TGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26801 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127854795:+ chr8:128806772-129199347:+ chr8:128867041:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 1 246 10 107 ENST00000671088.1 ENST00000501396.5 downstream downstream duplicates(15),mismatches(34) GGAAGAGCATACACATCTCCTGCtTCTTCGTATTTT|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26802 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 4 2 231 49 107 ENST00000523328.6 ENST00000501396.5 downstream downstream duplicates(14),mismatches(34) GGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCgAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___AGCTTTACAGAAATTCCATGCTGCCTTCAGCTTCCTTTGCCGCTCTGCATCATGTTG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26803 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 3 5 223 168 107 ENST00000662410.1 ENST00000501396.5 downstream downstream duplicates(14),mismatches(34) GGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26804 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 1 0 226 58 107 ENST00000651587.1 ENST00000501396.5 downstream downstream duplicates(14),mismatches(34) GAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA___GATTTATTAGGAGAAAAACCTTCCCGGAAGCTGCAGAAGGACAAATACAGAATCCGTGTCTGGGAGAAACCTCGTGGCCTGGTCTCCATTATTTGAGATGAGTTACATCTTGGAGGTGAGGACGTGCCTCGTGGTCTAAAGCTTCGGCACAAGGGCCCAACTGGAATTCCACTTACGG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26805 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127855319:+ chr8:128806772-129199347:+ chr8:128867565:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site exon/splice-site inversion medium none none none 0 3 201 13 935 ENST00000661830.1 ENST00000502082.5 downstream downstream duplicates(13),mismatches(27) ACCATAGCTGTCTGCAGTGCAGGAAGCCAACTATgAAtGtGAAACAAAAGTGTTCTTAGGAGTCCTGCTGTCACTGTGGATTGAGCCG...GAAGCCCTGAGGGATTTCATCGCTGAGGTGGATGGAGAAGCAGCTGGGGGCCTTGGCTGTAAGGACCCCTAAGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26806 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794733:+ chr8:128806772-129199347:+ chr8:128806979:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323155:- chr8:128302053-128494384:- chr8:128335400:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense unknown exon/splice-site intron inversion low none none none 0 0 0 1294 107 ENST00000651587.1 ENST00000523825.2 downstream downstream mismatches(1) GTTGGCGGTCCCTGTGACCTGgGGAGACACGGCCAGtgCTGCgCTCC|GGTTTAATACAACATGGAAGCCACCAAGGCTTACgGAATGcGCTTTCCAGcGCT...GGAGCCATCgCAGCTGATGCCACATGAAGCAGACACAAGCTGTCCCTACTAAGCTCTGCTCAAGTTGGATATTCATGAGTGAAATAAATGACTGTTACTA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26807 PSD3::CSGALNACT1 ENSG00000156011.19::ENSG00000147408.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2462 TRUE 4508 TRUE 1709 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19418750:- chr8:19261672-19615540:- chr8:19276261:- chr8:18976435,chr8:18976438 chr8:19419517,chr8:19419517 NA NA chr8:18833945,chr8:18833948 chr8:19277028,chr8:19277028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Chondroitin_N-acetylgalactosaminyltransferase(29%) |CHGN(12%),Glyco_transf_7C(100%) 12 222 33 97 501 ENST00000327040.13 ENST00000695898.1 upstream downstream duplicates(41),low_entropy(1),mismappers(6),mismatches(19) CTCGCGCCCTGAGGCTGCGGCCCCGGAGCGCCCGGCGGCGGTTTCGGCGCGCGGCCGGGCTGGCGATGGAAGATGGAAGGAAGGAGCGCAGCG|GGAAGAAGGTATTTTATCCAGTTCTTTTCAGTCAGTACAATCCTGGCATAATATACGGCCACCATGATGCAGTCCCTCCCTTGGAACAGCAGCTG___GTCATAAAGAAGGAAACTGGATTTTGGAGAGACTTTGGATTTGGGATGACGTGTCAGTATCGGTCAGACTTCATCAATATAG___GTGGGTTTGATCTGGACATCAAAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCT MEGRSAA|grryfiqffsvstila* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26808 PSD3::CSGALNACT1 ENSG00000156011.19::ENSG00000147408.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2463 TRUE 4508 TRUE 1709 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19408694:- chr8:19261672-19615540:- chr8:19266205:- chr8:18976435,chr8:18976438 chr8:19419517,chr8:19419517 NA NA chr8:18833945,chr8:18833948 chr8:19277028,chr8:19277028 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Chondroitin_N-acetylgalactosaminyltransferase(22%) |CHGN(2%),Glyco_transf_7C(100%) 3 24 17 97 793 ENST00000327040.13 ENST00000695898.1 upstream downstream duplicates(3),mismatches(4) GCCGCCGGCACTCGCGCCCTGAGGCTGCGGCCCCGGAGCGCCCGGCGGCGGTTTCGGCGCGCGGCCGGGCTGGCGATGGAAGATGGAAGGAAGGAGCGCAGCG|GTCATAAAGAAGGAAACTGGATTTTGGAGAGACTTTGGATTTGGGATGACGTGTCAGTATCGGTCAGACTTCATCAATATAG___GTGGGTTTGATCTGGACATCAAAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCTCATAGTGGTAC MEGRSAA|VIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26809 PSD3::CSGALNACT1 ENSG00000156011.19::ENSG00000147408.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4508 TRUE 1709 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19406069:- chr8:19261672-19615540:- chr8:19263580:- chr8:18976435,chr8:18976438 chr8:19419517,chr8:19419517 NA NA chr8:18833945,chr8:18833948 chr8:19277028,chr8:19277028 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Chondroitin_N-acetylgalactosaminyltransferase(16%) |CHGN(0%),Glyco_transf_7C(4%) 0 2 6 97 766 ENST00000327040.13 ENST00000695898.1 upstream downstream mismatches(3) GCCGCCGGCACTCGCGCCCTGAGGCTGCGGCCCCGGAGCGCCCGGCGGCGGTTTCGGCGCGCGGCCGGGCTGGCGATGGAAGATGGAAGGAAGGAGCGCAGCG|GTGGGTTTGATCTGGACATCAAAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCTCATAGTGGTACGGACGCCTGTGCGAGGACTCTTCCACCTCTGGCATGAGAAGCGCTGCATGGACGAGCTGACCCCCGAGCAGTACAAGATGTGCATGCAGTCCAAGGCCATGAACGAGGCATCCCACGGCCAGCTGGGCATGCTGGTGTTCAGGCACGAGATAGAGGCTCACCTTCGC MEGRSAA|vgliwtskagaermctfiasistats* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26815 PEDS1::GMDS ENSG00000240849.11::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2464 TRUE 4510 TRUE 1710 PEDS1 ENSG00000240849.11 protein_coding - - chr20:50118254-50153734:- chr20:50143502:- chr20:48734791-48770271:- chr20:48760039:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |GDP-mannose_4_6_dehydratase(8%) |GDP_Man_Dehyd(0%) 53 46 28 1085 485 ENST00000371652.9 ENST00000380815.5 upstream downstream duplicates(6),mismatches(22),multimappers(3) GCCGGGGCCCGCGAGCTGGCTGCGCTCTACTCGCCAG___GCAAGCGCCTCCAGGAGTGGTGCTCTGTGATCCTGTGCTTCAGCCTCATCGCCCACAACCTGGTCCATCTCCTGCTGCTGGCCCGCTGGGAGGACACACCCCTCGTCATACTCGGTGTTG|GACTTTCTGCAGGGCGACTGCACCAAAGCGAAACAGAAGCTGAACTGGAAGCCCCGGGTCGCTTTCGAT___GAGCTGGTGAGGGAGATGGTGCACGCCGACGTGGAGCTCATGAGGACAAACCCCAATGCCTGAGCAGCGCCTCGGAGCCCGGCCCGCC AGARELAALYSPGKRLQEWCSVILCFSLIAHNLVHLLLLARWEDTPLVILGV|glsagrlhqseteaeleapgrfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26816 PEDS1::GMDS ENSG00000240849.11::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4510 TRUE 1710 PEDS1 ENSG00000240849.11 protein_coding - - chr20:50118254-50153734:- chr20:50153517:- chr20:48734791-48770271:- chr20:48770054:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |GDP-mannose_4_6_dehydratase(8%) |GDP_Man_Dehyd(0%) 1 0 1 1125 485 ENST00000371652.9 ENST00000380815.5 upstream downstream mismatches(5) GCGGCCCTGCaGCCGCCGCCGCCAGCAGAGCGCACCGGGCCGATCGGGCGAGTGGCCATGGCGGGCGCCGAGgACgGGCCGGGCCAGCAGCTGGAGCTGGACGAGGACGAGGCGTCTTGTTGCCGCTGGGGCGCGCAGCACGCCGGGGCCCGCGAGCTGGCTGCGCTCTACTCGCCAG|GACTTTCTGCAGGGCGACTGCACCAAAGCGAAACAGAAGCTGAACTGGAAGCCCCGGGTCGCTTTCGAT___GAGCTGGTGAGGGAGATGGTGCACGCCGACGTGGAGCTCATGAGGACAAACCCCAATGCCTGAGCAGCGCCTCGGAGCCCGGCCCGCC MAGAEdgPGQQLELDEDEASCCRWGAQHAGARELAALYSP|glsagrlhqseteaeleapgrfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26817 PEDS1::GMDS ENSG00000240849.11::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4510 TRUE 1710 PEDS1 ENSG00000240849.11 protein_coding - - chr20:50118254-50153734:- chr20:50151212:- chr20:48734791-48770271:- chr20:48767749:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation low none |GDP-mannose_4_6_dehydratase(8%) |GDP_Man_Dehyd(0%) 0 0 0 101 485 ENST00000453505.6 ENST00000380815.5 upstream downstream mismatches(1) TGCAGACAGCCTGGTGCCCCAAATCTGCAATCAAGGCCCTTTATCTCCTCCAGACCTGGAG|GACTTTCTGCAGGGCGACTGCACCAcAGCGAAACAGAA...GAGCAGaGCCTCGGAGCCCGGCCCGCCCTCCGGCTACAATCCCCGCAGAGgCTCCGGTGCAGACGCGCTGCGGGGATGcGtAGCGGCGTGCCAATgTGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26818 PEDS1-UBE2V1::GMDS ENSG00000124208.16::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4511 TRUE 1711 PEDS1-UBE2V1 ENSG00000124208.16 protein_coding - - chr20:50081124-50153637:- chr20:50143502:- chr20:48697661-48770174:- chr20:48760039:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |GDP-mannose_4_6_dehydratase(8%) |GDP_Man_Dehyd(0%) 53 46 27 1085 485 ENST00000341698.2 ENST00000380815.5 upstream downstream duplicates(6),mismatches(14),multimappers(3) GCCGGGGCCCGCGAGCTGGCTGCGCTCTACTCGCCAG___GCAAGCGCCTCCAGGAGTGGTGCTCTGTGATCCTGTGCTTCAGCCTCATCGCCCACAACCTGGTCCATCTCCTGCTGCTGGCCCGCTGGGAGGACACACCCCTCGTCATACTCGGTGTTG|GACTTTCTGCAGGGCGACTGCACCAAAGCGAAACAGAAGCTGAACTGGAAGCCCCGGGTCGCTTTCGAT___GAGCTGGTGAGGGAGATGGTGCACGCCGACGTGGAGCTCATGAGGACAAACCCCAATGCCTGAGCAGCGCCTCGGAGCCCGGC AGARELAALYSPGKRLQEWCSVILCFSLIAHNLVHLLLLARWEDTPLVILGV|glsagrlhqseteaeleapgrfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26819 PEDS1-UBE2V1::GMDS ENSG00000124208.16::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4511 TRUE 1711 PEDS1-UBE2V1 ENSG00000124208.16 protein_coding - - chr20:50081124-50153637:- chr20:50153517:- chr20:48697661-48770174:- chr20:48770054:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none |GDP-mannose_4_6_dehydratase(8%) |GDP_Man_Dehyd(0%) 1 0 0 1125 485 ENST00000341698.2 ENST00000380815.5 upstream downstream mismatches(1) GCCGGGCCAGCAGCTGGAGCTGGACGAGGACGAGGCGTCTTGTTGCCGCTGGGGCGCGCAGCACGCCGGGGCCCGCGAGCTGGCTGCGCTCTACTCGCCAG|GACTTTCTGCAGGGCGACTGCACCAAAGCGAAACAGAAGCTGAACTGGAAGCCCCGGGTCGCTTTCGAT___GAGCTGGTGAGGGAGATGGTGCACGCCGACGTGGAGCTCATGAGGACAAACCC PGQQLELDEDEASCCRWGAQHAGARELAALYSP|glsagrlhqseteaeleapgrfr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26820 AP5B1::CASC8 ENSG00000254470.3::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4512 TRUE 1712 AP5B1 ENSG00000254470.3 protein_coding - - chr11:65773898-65780976:- chr11:65780442:- chr11:65541369-65548447:- chr11:65547913:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr11:65780247,chr11:65780251 chr8:127385968,chr8:127385969 NA NA chr11:65547718,chr11:65547722 chr8:128398213,chr8:128398214 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 16 79 19 137 935 ENST00000532090.3 ENST00000502082.5 upstream downstream duplicates(3),mismatches(15) CAGCCCCTCGGGGTCGGCAGCGGGCCCCGCGCTCCCGGTGGCTGCGGCCTGAGGGTCCCTCTTCCCTGCGCAGGGGCCCGCGCGCCTCACCATGGGGCCCCTGAGCCGGGACGCCTGGGCCCAGCGCTTGGGGGCCTTCCGGGCCAGCCCGTCTGCCTTCATGGCAGGTCCCGAGGGGGAGGATTTGGGTCGCGACCTGCTGAGCGACCTGAGAAGTGAGAAGCTGAGCGAACAGACCAAG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATCCCAGCTGATGCCACATGAAGCAGACACAA MGPLSRDAWAQRLGAFRASPSAFMAGPEGEDLGRDLLSDLRSEKLSEQTK|varklk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26821 AP5B1::CASC8 ENSG00000254470.3::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4512 TRUE 1712 AP5B1 ENSG00000254470.3 protein_coding - - chr11:65773898-65780976:- chr11:65780442:- chr11:65541369-65548447:- chr11:65547913:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr11:65780247,chr11:65780251 chr8:127385968,chr8:127385969 NA NA chr11:65547718,chr11:65547722 chr8:128398213,chr8:128398214 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 1 9 20 137 107 ENST00000532090.3 ENST00000501396.5 upstream downstream mismatches(7) GCGGGTCCCGCCGGCATCTGCGCGGCGTCTGGGGGTGACCGCAGCCCCTCGGGGTCGGCAGCGGGCCCCGCGCTCCCGGTGGCTGCGGCCTGAGGGTCCCTCTTCCCTGCGCAGGGGCCCGCGCGCCTCACCATGGGGCCCCTGAGCCGGGACGCCTGGGCCCAGCGCTTGGGGGCCTTCCGGGCCAGCCCGTCTGCCTTCATGGCAGG?CCCGAGGGGGgGG?TTTGGGTCGCGACCTGCTGAGCGACCTGAGAAGTGAGAAGCTGAGCGAACAGACCAAG|GTTTAATACAACATGGAAGCCACCAAGGCTTACAGAATGTGCTTTCCAGAGCTGTGACCTGAACTGTACCTGGGGCCTTTTGAGTGAGGCTGGAACTGGAGTGGCCTGGATGCAGAGAGCAGTGTCCTAAGGCTGTGCAG___GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACG MGPLSRDAWAQRLGAFRASPSAFMAGPEGg?LGRDLLSDLRSEKLSEQTK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26822 BAG4::ASH2L ENSG00000156735.11::ENSG00000129691.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2465 TRUE 4513 TRUE 1713 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38192795:+ chr8:38034051-38070819:+ chr8:38050313:+ ASH2L ENSG00000129691.16 protein_coding + + chr8:38105493-38144076:+ chr8:38110379:+ chr8:37963011-38001594:+ chr8:37967897:+ chr8:38197635 chr8:38109181 NA NA chr8:38055153 chr8:37966699 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SPRY_domain(100%) |SPRY(100%) 39 16 29 375 819 ENST00000287322.5 ENST00000517496.5 downstream upstream duplicates(4),mismatches(18) CCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG___GAGCAGCCACCATATCCTAGCTACAATTCTAACTATTGGAATTCTACTGCGAGATCTAGGGCTCCTTACCCAAGTACATATCCTGTAAGACCAGAATTGCAAGGCCAG|ATCCTGTCTACCTTTCATGACCAACTACAGTTTTCATTGCAACGTCTGCCATCACAGTGGGAATACCTATTTCCTCCGGAAGCAAGCAA___ACTTGAAGGAAATGTGCCTTAGTGCTTTGGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATCCGAAGACAATGTTCTC SGGAWPEPGRAGGSHQEQPPYPSYNSNYWNSTARSRAPYPSTYPVRPELQGQ|ILSTFHDQLQFSLQRLPSQWEYLFPPEASKLEGNVP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26823 BAG4::ASH2L ENSG00000156735.11::ENSG00000129691.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2466 TRUE 4513 TRUE 1713 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38177139:+ chr8:38034051-38070819:+ chr8:38034657:+ ASH2L ENSG00000129691.16 protein_coding + + chr8:38105493-38144076:+ chr8:38110379:+ chr8:37963011-38001594:+ chr8:37967897:+ chr8:38197635 chr8:38109181 NA NA chr8:38055153 chr8:37966699 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |SPRY_domain(100%) |SPRY(100%) 5 9 11 299 819 ENST00000287322.5 ENST00000517496.5 downstream upstream duplicates(1),mismatches(11),multimappers(1) GAGGCGCTCGGGCTACGGCCCCAGTGACGGTCCGTCCTACGGCCGCTACTACGGGCCTGGGGGTGGAGATGTGCCGGTACACCCACCTCCACCCTTATATCCTCTTCGCCCTGAACCTCCCCAGCCTCCCATTTCCTGGCGGGTGCGCGGGGGCGGCCCGGCGGAGACCACCTGGCTGGGAGAAGGCGGAGGAGGCGATGGCTACTATCCCTCGGGAGGCGCCTGGCCAGAGCCTGGTCGAGCCGGAGGAAGCCACCAG|ATCCTGTCTACCTTTCATGACCAACTACAGTTTTCATTGCAACGTCTGCCATCACAGTGGGAATACCTATTTCCTCCGGAAGCAAGCAA___ACTTGAAGGAAATGTGCCTTAGTGCTTTGGCCAACCTGACATGGCAGTCCCGAACACAGGATGAACATCCGAAGACAATGTTCTCCAAAG RRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPLYPLRPEPPQPPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQ|ILSTFHDQLQFSLQRLPSQWEYLFPPEASKLEGNVP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26824 TMEM123::LBR ENSG00000152558.15::ENSG00000143815.15 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM123 ENSG00000152558.15 protein_coding - - chr11:102396332-102470384:- chr11:102448812:- chr11:102267063-102341115:- chr11:102319543:- LBR ENSG00000143815.15 protein_coding - + chr1:225401502-225428925:- chr1:225409482:+ chr1:225589204-225616627:- chr1:225597184:+ chr11:102428612,chr11:102428617 chr1:225406450,chr1:225406445 NA NA chr11:102299343,chr11:102299348 chr1:225594152,chr1:225594147 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 28 14 25 3058 102 ENST00000398136.7 unknown upstream upstream low_entropy(1),mismappers(1),mismatches(6) GGGAGGGGAAACGTGCGCGGCCGAAGGGGAAGCGGAGCCGGCGCCGGCTGCGCAGAGGAGCCGCTCTCGCCGCCGCCACCTCGGCTGGGAGCCCACGAGGCTGCCGCATCCTGCCCTCGGAACAATGGGACTCGGCGCGCGAGGTGCTTGGGCCGCGCTGCTCCTGGGGACGCTGCAGGTGCTAGCGCTGCTGGGGGCCGCCCATGAAAGCGCAGCCATGGCGG___CATCTGCAAACATAGAGAATTCTGGGCTTCCACACAACTCCAGTGCTAACTCAACAG|GCTCAAAGAGAAAAGGTCTTCTCTCAAAATGTCAGCAGATTGTCTCAACAGACTGTCACTAAAACTTGTTTTGGAACATTATGATGTACAGCTGCCAGATTTGTTTTTAATATGGAAAGAAAACTAGAGTTGGAATTTGGAGATAATTACAAAGATAACAGTAAATACGATAAAATACTTGTAAAATAAGCCTGAGGAAGACAAAATTTTTAAAAGGAATATGCTGGCTGAGACAG MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANST|gskrkgllskcqqivstdch* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26825 ENSG00000291073::ENSG00000273956 ENSG00000291073.1::ENSG00000273956.1 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2467 FALSE NA FALSE NA ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- ENSG00000273956 ENSG00000273956.1 lncRNA - - chr16:21526824-21531141:- chr16:21527214:- chr16:21538145-21542462:- chr16:21538535:- chr16:21505789,chr16:21505793 chr16:21529668,chr16:21529669 NA NA chr16:21517110,chr16:21517114 chr16:21540989,chr16:21540990 NA NA sense sense unknown exon/splice-site exon/splice-site duplication high none none none 9 27 17 247 230 ENST00000522841.6 ENST00000613759.1 upstream downstream duplicates(1),mismatches(33) GCGTCTTCTCCATCGTGGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACGTCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATCATCCGGCCTTCATCGCAGTACATCGTGGCCCTGGTCTTCGCCACCTACCTGCTCAAGCCGCTCTTCCCCACCTGCCCGGTGCCCGAGGAGGCAGCCAAGCTCGTAGCCTGCCACTCCGTGC|GGGGCCCTCTGCACGCACCAACATCTTTGTCTCCTGAAAAATGGCCTTTGTCAGTTATTTTTAAAAACTGGTGTTAATCCTGAGACACGGAGATACTCCCAGGAAGACATCCGAGCCTGGACACACTGAGATGAAACCAGAAACACTCCGAGAGAAAATGACATTGATTCCAGCCCTCAAAGCAACGGGACAAAAAACAAACAGGAGGCTTCCCTCCCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26826 ACTL8::PCBP3 ENSG00000117148.8::ENSG00000183570.17 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ACTL8 ENSG00000117148.8 protein_coding + + chr1:17755333-17827063:+ chr1:17755504:+ chr1:18081828-18153558:+ chr1:18081999:+ PCBP3 ENSG00000183570.17 protein_coding + - chr21:45643694-45942454:+ chr21:45697747:- chr21:47063608-47362368:+ chr21:47117661:- chr1:17775811,chr1:17775806 chr21:45698262,chr21:45698272 NA NA chr1:18102306,chr1:18102301 chr21:47118176,chr21:47118186 NA NA sense antisense unknown 5'UTR/splice-site intron translocation/5'-5' high none none none 1 4 36 2339 12 ENST00000375406.2 unknown downstream downstream duplicates(1),mismappers(5),mismatches(5),multimappers(1) TGCGGCACCACGTGCAGCCGCTCTCGTGCAGGCGTTTGCAGTGTGCAGCTGAGTTCGGCAGCTCACACAGCACCCCTTTCAAGTTGTTTTGCAGTGGGTGCCTCTTGTGAGACACTGTTTCTGAGAGCAGCTTTTGTGGCATCTTACAGGGCAGATTTCTG|GGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGAGTGCAGTGTCATGATCATGGCTCACTGCAGCCTTCACCGGCCAGGCTCGAGCAATCCTCCCATCTCAGCCTTCCGAGTAGCTTGGACCACAG___...TTAACATAATAATTTTGAGATTCACCC?CGTTATTGTGGGTATCAGAACAATGTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26827 SIPA1L3::TFCP2 ENSG00000105738.11::ENSG00000135457.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2468 TRUE 4514 TRUE 1714 SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51118772:- chr12:51487439-51566918:- chr12:51512555:- chr19:37945518,chr19:37945516,chr19:37945491 chr12:51164192,chr12:51164194,chr12:51164364 NA NA chr19:38436158,chr19:38436156,chr19:38436131 chr12:51557975,chr12:51557977,chr12:51558147 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |CP2_transcription_factor(100%),SAM_domain_(Sterile_alpha_motif)(100%) |CP2(100%),SAM_3(100%) 11 15 13 58 278 ENST00000222345.11 ENST00000257915.10 downstream downstream duplicates(1),inconsistently_clipped(1),mismatches(9) ACTCGCGCGAAGCGGCTTGGAAGTGGGCAGCCTGGAAGTCACTCGGGCCACCGGAGCTGGCGGCGTCTCCAGCGAGCGGCGCGGAGCTGGACGCCGCGATCGTGGGGCCCGCGAGGCGGGCAGCCGGGGCGTCCAG|TGATGTCCTTGCATTGCCCATTTTTAAGCAAGAAGAGTCGAGTTTGCCTCCTGATAATGAGAATAAAATCCTGCCTTTTCAATATGTGCTTTGTGCTGCTACCTCTCCAGCAGTGAAACTCCATGATGAAACCCTAACGTATCTCAATCAAG___GACAGTCTTATGAAATTCGAATGCTAGACAATAGGAAACTTGGAGAACTTCCAGAAATTAATGGCAAATTGGTGAAG___AGTATATTCCGTGTGGTGTTCCATGACAGAAGGCTTCAGTACACTGAGCATCAGCAGCTAGAGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26828 SIPA1L3::TFCP2 ENSG00000105738.11::ENSG00000135457.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4514 TRUE 1714 SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37932692:+ chr19:38397848-38699009:+ chr19:38423332:+ TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51118772:- chr12:51487439-51566918:- chr12:51512555:- chr19:37945518,chr19:37945516,chr19:37945491 chr12:51164192,chr12:51164194,chr12:51164364 NA NA chr19:38436158,chr19:38436156,chr19:38436131 chr12:51557975,chr12:51557977,chr12:51558147 NA NA sense sense unknown exon/splice-site CDS/splice-site translocation high none |CP2_transcription_factor(100%),SAM_domain_(Sterile_alpha_motif)(100%) |CP2(100%),SAM_3(100%) 1 2 14 7 278 ENST00000476317.2 ENST00000257915.10 downstream downstream duplicates(1),mismatches(6) AGGTCGGCCTGGAGAGCCAAGGCAGGTGGCCTCGCCCTGGGAGGACCAGGGACAGGAGGAGTCCACCTGGGGCTCCCCTGACAGCCACCTGCCCACTTTGTGATCAGAGCCGTGTTCGGGGAGTCTTTCAG|TGATGTCCTTGCATTGCCCATTTTTAAGCAAGAAGAGTCGAGTTTGCCTCCTGATAATGAGAATAAAATCCTGCCTTTTCAATATGTGCTTTGTGCTGCTACCTCTCCAGCAGTGAAACTCCATGATGAAACCCTAACGTATCTCAATCAAG___GACAGTCTTATGAAATTCGAATGCTAGACAATAGGAAACTTGGAGAACTTCCAGAAATTAATGGCAAATTGGTGAAG___AGTATATTCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26832 BTG3::C21orf91 ENSG00000154640.15::ENSG00000154642.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2471 TRUE 4516 TRUE 1715 BTG3 ENSG00000154640.15 protein_coding - - chr21:17593653-17612945:- chr21:17598617:- chr21:18965971-18985263:- chr21:18970935:- C21orf91 ENSG00000154642.11 protein_coding - - chr21:17788974-17819386:- chr21:17795270:- chr21:19161291-19191703:- chr21:19167587:- chr21:17595580,chr21:17595582 chr21:17796280,chr21:17796283 NA NA chr21:18967898,chr21:18967900 chr21:19168597,chr21:19168600 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BTG_family(100%)|EURL_protein(23%) BTG(100%)|EURL(7%) 8 9 14 790 154 ENST00000348354.7 ENST00000284881.9 upstream downstream mismatches(2) TCTGGGTGGACCCATGTGAGGTGTGCTGTCG___GTATGGAGAGAAAAACAATGCATTCATTGTTGCCAGCTTTGAAAATAAAGATGAGAACAAGGATGAGATCTCCAGGAAAGTTACCAGGGCCCTTGATAAGGTTACCTCTGATTATCATTCAGGATCCTCTTCTTCAGATGAAGAAACAAGTAAGGAAATGGAAGTGAAACCCAGTTCGGTGACTGCAGCCGCAAGTCCTGTGTACCAG|TGAATTtGATGACTCTTGGTGAGGTAGAGCAACTGAATGCAAAGCTCCTACAGCAAATCCAGG___AAGTTTTTGAAGAGTTAACTCACCAAGTGCAAGAAAAAGATTCTTTGGCCTCACAGCTCCATGTCCGCCACGTTGCCAT WVDPCEVCCRYGEKNNAFIVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQ|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26833 BTG3::C21orf91 ENSG00000154640.15::ENSG00000154642.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4516 TRUE 1715 BTG3 ENSG00000154640.15 protein_coding - - chr21:17593653-17612945:- chr21:17598617:- chr21:18965971-18985263:- chr21:18970935:- C21orf91 ENSG00000154642.11 protein_coding - - chr21:17788974-17819386:- chr21:17793581:- chr21:19161291-19191703:- chr21:19165898:- chr21:17595580,chr21:17595582 chr21:17796280,chr21:17796283 NA NA chr21:18967898,chr21:18967900 chr21:19168597,chr21:19168600 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BTG_family(100%)|EURL_protein(16%) BTG(100%)|EURL(0%) 3 0 7 790 204 ENST00000348354.7 ENST00000284881.9 upstream downstream mismatches(1) TGAGAAATTGACCCTAATACTTCAAGAAAAATATAAAAATCACTGGTATCCAGAAAAACCATCGAAAGGACAGGCCTACAG___ATGTATTCGTGTCAATAAAT...AAACAATGCATTCATTGTTGCCAGCTTTGAAAATAAAGATGAGAACAAGGATGAGATCTCCAGGAAAGTTACCAGGGCCCTTGATAAGGTTACCTCTGATTATCATTCAGGATCCTCTTCTTCAGATGAAGAAACAAGTAAGGAAATGGAAGTGAAACCCAGTTCGGTGACTGCAGCCGCAAGTCCTGTGTACCAG|AAGTTTTTGAAGAGTTAACTCACCAAGTGCAAGAAAAAGATTCTTTGGCCTCACAGCTCCATGTCCGCCACGTTGCCATCGAACAGCTTCTGAAGAACTGTTCTAAGTTACCATGTCTGCAAGTAGGGCGAACAGGAATGAAGTCGCACCTACCCATAAACAACTGACCTAAACAGACTTACTTCGTATGCCCTGCCCTTTATgGGTCTCCCAGACATGCAAACTTTGAAGAAGTTTGAAGAAAG NNAFIVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQ|kflks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26836 DPY19L4::IL1RN ENSG00000156162.16::ENSG00000136689.20 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4517 FALSE NA DPY19L4 ENSG00000156162.16 protein_coding + + chr8:94719703-94793836:+ chr8:94781166:+ chr8:95731931-95806064:+ chr8:95793394:+ IL1RN ENSG00000136689.20 protein_coding + + chr2:113099315-113134016:+ chr2:113111116:+ chr2:113856892-113891593:+ chr2:113868693:+ chr8:94782918 chr2:113100742 NA NA chr8:95795146 chr2:113858319 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site translocation high none Q-cell_neuroblast_polarisation(78%)|Interleukin-1_/_18(100%) Dpy19(86%)|IL1(100%) 0 2 2 230 79 ENST00000414645.6 ENST00000409052.6 downstream upstream mismatches(1) ATAATTTATCATGTAATTCACACTATTTTATTGGGTTCTCTTGCAATGGTTATAGAAGG___CTTGAAGTACATCTGGATTCCTTATGTGTGCATGTTAGCAGC...GCCGTGCCTACTATAATAGGTCTCAGCTTATGGAAAGAG___TTTTTTCCCAGATTAATGACAGAATTAATGGAACTACAGGAATTCTATGACCCAGATACAGTGGAACTTATGACCTGGATAAA|GAATTAGCAGTTCACAAAGCACATTCGCATATAAGGGCTT...TCTATGAGACAAGTAAAAG___CACAAGAGGAATAGGAACTGCACCTCTTCCTTCAGTTTCAGCTTGAATAATATCAGGAAGATTCGTATCGGTCTGAGTTGGGTCACGTACCCGACGTGCTATAGCTGAGGATGGGGTAAGCTGATTGGAGTTTGCAACACTGTTCACA AVPTIIGLSLWKEFFPRLMTELMELQEFYDPDTVELMTWIk|n* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26837 PPFIA1::ANO1 ENSG00000131626.19::ENSG00000131620.18 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2472 TRUE 4518 TRUE 1716 PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70372574:+ chr11:70116796-70231418:+ chr11:70218680:+ ANO1 ENSG00000131620.18 protein_coding + + chr11:69985907-70189530:+ chr11:70078542:+ chr11:69832013-70035636:+ chr11:69924648:+ chr11:70374756,chr11:70374746 chr11:70062416,chr11:70062403 NA NA chr11:70220862,chr11:70220852 chr11:69908522,chr11:69908509 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none SAM_domain_(Sterile_alpha_motif)(47%)|Calcium-activated_chloride_channel(100%),Dimerisation_domain_of_Ca+-activated_chloride-channel__anoctamin(100%) SAM_1(100%),SAM_2(16%)|Anoct_dimer(100%),Anoctamin(100%) 9 9 9 475 69 ENST00000253925.12 ENST00000531349.6 downstream upstream duplicates(1),mismatches(10) CTTCGAGGGCAGCTGAAAATGGTCGACAGTTTTCACAG___AAACAGTTTCCAGTGTGGAATTATGTGCCTGAGAAGGTTAAATTATGACCGGAAAGAACTGGAAAGAAAAAGAGAAGAAAGTCAGAGTGAAATAAAAG|AGGCCGCCGGGGCCGTGGATGGGGAGGGCGCGCCGCCCGGCGGTCCCAGCGCACAGGCGGCCACGATGAGGGTCAACGAGAAGTACTCGACGCTCCCGGCCGAGGACCGCAGCGTCCACATCATCAACATCTGCGCCATCGAGGACATCGGCTACCTGCCGTCCGAGGGCACG___CTGCTGAACTCCTTATCTGTGGACCCTGATGCCGAGTGCAAGTATGGCCTGTACTTCAGGGACGGCCGGCGCAAGGTGGACTACATCCTGGTGTACCATCACAAGAGGCCCTCGGGCAACCGGACCCTGGTCAGGAGGGTGCAGCACAGCGACACCCCCTCTGGGGCTCGCAGCGTCAAGCAGGACCACCCCCTGCCGGGCAAGGGGGCGTCGCTGGATGCAGGCTCGGGGGAGCCCCCGAT LRGQLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQSEIK|eAAGAVDGEGAPPGGPSAQAATMRVNEKYSTLPAEDRSVHIINICAIEDIGYLPSEGTLLNSLSVDPDAECKYGLYFRDGRRKVDYILVYHHKRPSGNRTLVRRVQHSDTPSGARSVKQDHPLPGKGASLDAGSGEPP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548k chr11:70283955-70284070:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Skin Cutaneous Melanoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma SKIN,CERVIX,STOMACH,STOMACH no_match 70118542|70118542,70118542,70118542|70118542,70118542|70117020 FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE 69933858|69949172,69962564,70016993|70026110,70007267|70007267 FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame TRUE Cervix CERVIX no_match 70272436|70272382|70272382 FALSE|FALSE|FALSE 70116458|70189069|70116458 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26838 PPFIA1::ANO1 ENSG00000131626.19::ENSG00000131620.18 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4518 TRUE 1716 PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70372574:+ chr11:70116796-70231418:+ chr11:70218680:+ ANO1 ENSG00000131620.18 protein_coding + + chr11:69985907-70189530:+ chr11:70087752:+ chr11:69832013-70035636:+ chr11:69933858:+ chr11:70374756,chr11:70374746 chr11:70062416,chr11:70062403 NA NA chr11:70220862,chr11:70220852 chr11:69908522,chr11:69908509 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none SAM_domain_(Sterile_alpha_motif)(47%)|Calcium-activated_chloride_channel(100%),Dimerisation_domain_of_Ca+-activated_chloride-channel__anoctamin(100%) SAM_1(100%),SAM_2(16%)|Anoct_dimer(100%),Anoctamin(100%) 0 2 1 475 65 ENST00000253925.12 ENST00000531349.6 downstream upstream none AAATGGTCGACAGTTTTCACAG___AAACAGTTTCCAGTGTGGAATTATGTGCCTGAGAAGGTTAAATTATGACCGGAAAGAACTGGAAAGAAAAAGAGAAGAAAGTCAGAGTGAAATAAAAG|CTGCTGAACTCCTTATCTGTGGACCCTGATGCCGAGTGCAAGTATGGCCTGTACTTCAGGGACGGCCGGCGCAAG...AGGGGGCGTCGCTGGATGCAGGCTCGGGGGAGCCCCCGATGGACTACCACGAGGATGACAAGCGCTTCCGCAGGGAGGAGTACGAGGGCAACCTCCcGGAG MVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQSEIK|aaellicgp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-548k chr11:70283955-70284070:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Skin Cutaneous Melanoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma SKIN,CERVIX,STOMACH,STOMACH no_match 70118542|70118542,70118542,70118542|70118542,70118542|70117020 FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE 69933858|69949172,69962564,70016993|70026110,70007267|70007267 TRUE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame TRUE Cervix CERVIX no_match 70272436|70272382|70272382 FALSE|FALSE|FALSE 70116458|70189069|70116458 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26841 ING1::COL4A2 ENSG00000153487.13::ENSG00000134871.19 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2475 TRUE 4519 TRUE 1717 ING1 ENSG00000153487.13 protein_coding + + chr13:110712736-110723339:+ chr13:110714285:+ chr13:111365083-111375686:+ chr13:111366632:+ COL4A2 ENSG00000134871.19 protein_coding + + chr13:110305812-110513209:+ chr13:110424734:+ chr13:110958159-111165556:+ chr13:111077081:+ chr13:110715345,chr13:110715343 chr13:110360157,chr13:110360152 NA NA chr13:111367692,chr13:111367690 chr13:111012504,chr13:111012499 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Inhibitor_of_growth_proteins_N-terminal_histone-binding(31%)|C-terminal_tandem_repeated_domain_in_type_4_procollagen(100%),Collagen_triple_helix_repeat_(20_copies)(100%) ING(20%)|C4(100%),Collagen(100%) 4 8 9 133 120 ENST00000333219.9 ENST00000360467.7 downstream upstream mismatches(1) GCGGAAAGCCGCGCCGAGTCGCCGGGGACCTCCGGGGTGAACCATGTTGAGTCCTGCCAACGGGGAGCAGCTCCACCTGGTGAACTATGTGGAGGACTACCTGGACTCCATCGAGTCCCTGCCTTTCGACTTGCAGAGAAATGTCTCGCTGATGCGGGAGATCGACGCGAAATACCAAG|GGTCAGCCTGGGCCAGTGGGCCCCCAGGGGTACAATGGGCCACCAGGATTACAAGGATTCCCGGGACTGCAGGGACGTAAAGGAGACAAGGGTGAAAGGGGAGCCCCCGGAGTAACGGGACCCAAGGGCGACGTG___GGAGCAAGAGGCGTTTCTGGATTCCCTGGTGCCGATGGAATTCCT___GGACACCCGGGGCAAGGTGGGCC MLSPANGEQLHLVNYVEDYLDSIESLPFDLQRNVSLMREIDAKYQ|gsawasgppgvqwatritripgtagt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26842 ING1::COL4A2 ENSG00000153487.13::ENSG00000134871.19 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4519 TRUE 1717 ING1 ENSG00000153487.13 protein_coding + + chr13:110712736-110723339:+ chr13:110713586:+ chr13:111365083-111375686:+ chr13:111365933:+ COL4A2 ENSG00000134871.19 protein_coding + + chr13:110305812-110513209:+ chr13:110424734:+ chr13:110958159-111165556:+ chr13:111077081:+ chr13:110715345,chr13:110715343 chr13:110360157,chr13:110360152 NA NA chr13:111367692,chr13:111367690 chr13:111012504,chr13:111012499 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none Inhibitor_of_growth_proteins_N-terminal_histone-binding(0%)|C-terminal_tandem_repeated_domain_in_type_4_procollagen(100%),Collagen_triple_helix_repeat_(20_copies)(100%) ING(9%)|C4(100%),Collagen(100%) 0 1 2 6 120 ENST00000375775.4 ENST00000360467.7 downstream upstream none GGTAGTTGCTGTGTACCATGGTCTCGGAGGTTTCTGTCCCGCGGCCCGTTAGGTCCTGGTCGGGTTTTCAGCGAAGCAGGCCGCTgCCCTGCGTTTCCCAG...CACACCCCAGCGGCCCTGACGCTGTCCCCTCCGCGACCCTCGCCTCTGGAAAAAGTGACAGGCAAGGCCACGCCCCCGCGAGGGCCGGCCTGGAGCCCGCAGCCCCCAGGGCCTGGGACG|GGTCAGCCTGGGCCAGTGGGCCCCCAGGGGTACAATGGGCCACCAGGATTACAAGGATTCCCGGGACTGCAGGGACGTAAAGGAGACAAGGGTGAAAGGGGAGCCCCCGGAGTAACGGGACCCAAGGGCGACGTG___GGAGCAAGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26843 TADA1::POU2F1 ENSG00000152382.6::ENSG00000143190.23 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TADA1 ENSG00000152382.6 protein_coding - - chr1:166856510-166876264:- chr1:166869445:- chr1:166825747-166845501:- chr1:166838682:- POU2F1 ENSG00000143190.23 protein_coding + - chr1:167220876-167427345:+ chr1:167372421:- chr1:167190113-167396582:+ chr1:167341658:- chr1:166868235,chr1:166868242 chr1:167382517,chr1:167382521 NA NA chr1:166837472,chr1:166837479 chr1:167351754,chr1:167351758 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Transcriptional_regulator_of_RNA_polII__SAGA__subunit(44%)| SAGA-Tad1(41%)| 9 4 7 201 11 ENST00000367874.5 unknown upstream downstream none GCCAAGAAGAACTTAAGCGAGGCCCTGGGGGACAACGTGAAACA___ATACTGGGCTAACCTAAAGCTGTGGTTCAAGCAGAAGATCAGCAAAGAGGAGTTTGACCTTGAAGCTCATAGACTTCTCACACAGGATAATG___TCCATTCTCACAATGATTTCCTCCTGGCCATTCTCACGCGTTGTCAGATTTTGGTTTCTACACCAG|GTACTAATCCATTCTTTAACTTCTACCCTGCAGTGATGTCTTAATGCCAAATGGATAACTGCCATTTTCAGTGTAATGATCTCAACCATATGATAATTACTCCATTGCATGATGAAGCAACACCTGAAACAGGGGTTTAATAAGGTTTTTAATTTATCCAGAGCATCCACAATTCTAATAAAAGA AKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQILVSTP|gtnpffnfypavms* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26850 FNIP2::RXFP1 ENSG00000052795.13::ENSG00000171509.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2477 FALSE NA FALSE NA FNIP2 ENSG00000052795.13 protein_coding + + chr4:158769026-158908050:+ chr4:158870469:+ chr4:159690178-159829202:+ chr4:159791621:+ RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158651757:+ chr4:159236463-159574524:+ chr4:159572909:+ chr4:158874233,chr4:158874218 chr4:158651460,chr4:158651442 NA NA chr4:159795385,chr4:159795370 chr4:159572612,chr4:159572594 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Folliculin-interacting_protein_C-terminus(31%),Folliculin-interacting_protein_N-terminus(100%),Folliculin-interacting_protein_middle_domain(100%)|7_transmembrane_receptor_(rhodopsin_family)(8%) FNIP_C(2%),FNIP_M(100%),FNIP_N(100%)|7tm_1(1%) 4 8 6 107 16 ENST00000264433.11 ENST00000460056.6 downstream upstream mismatches(2) CGCCCTGGGAGACAGTGACGACGAAGCCTGCGCTTCAGCCATGCTAGATCTGGGTCACGGTGGTGACAGGACTGGAGGGTCCTTGGAAGTGGAGCTGCCTCTGCCAAG___GTCTCAGAGCATCAGCACCCAGAATGTAAGGAACTTTGGCCGCTCACTTCTGGCaGGCTACTGCCCCACATACATGCCTGATCTTGTGCTTCATGGGACCGGCAGTGATGAGAAGCTGAAGCAGTGCCTGGTGGCCGACCTTGTCCACACAGTCCAT|GTACCATAACCTCTTGGGTAGTGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATACTCTGACCACAAGACCATTTAAAGAAATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGACAGCAAAGGTCA ALGDSDDEACASAMLDLGHGGDRTGGSLEVELPLPRSQSISTQNVRNFGRSLLAGYCPTYMPDLVLHGTGSDEKLKQCLVADLVHTVH|vp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 159690471 FALSE 159559160 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26851 CDK14::ZNF804B ENSG00000058091.17::ENSG00000182348.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:90604249:+ chr7:90095738-90839905:+ chr7:90233563:+ ZNF804B ENSG00000182348.7 protein_coding + - chr7:88759700-89338528:+ chr7:89056050:- chr7:88389014-88967842:+ chr7:88685364:- chr7:90657739,chr7:90657740 chr7:89080511,chr7:89080510 NA NA chr7:90287053,chr7:90287054 chr7:88709825,chr7:88709824 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 6 6 6 59 12 ENST00000380050.8 unknown downstream downstream mismatches(2) CCGCCTGCCTGCTGCTCGCCTCCCTAGACCTGCGCGTCGCTTCCCGGCCCGCCGAGGAGGTGGTGGAGGAGGAGGCGCCGCTTTCCCCGCGGCGCGCGCCCTCGCCGTTGTCTGAGCTGTGCCTGGACCAGTTTGGGGAAGTTGTCGGGGCcCCGCGTCGCCCAGATGTGTGACCTCATTGAGCCGCAGCCGGCCGAGAAGATCGGCAAGATGAAGAAGTTGCGGAGAACTTTGTCGGAGAGTTTCAGTCGCATTG___CTTTGAAGAAAGATGACACCACCTTTGATGAG|GGAGAGAGTCTCTTTGGAATTTCCTCATCTGACCAAGAAAGCTTCTTTCCAAAAGAAATACAATTGTCTTAAATCCTCACCCTAAGTGATCTCATCAAATAACCAGGAAAAATCAACCACCTGAGAAGAGACTTGGAGTTATCACCACATCCAGAC MCDLIEPQPAEKIGKMKKLRRTLSESFSRIALKKDDTTFDE|geslfgisssdqesffpkeiqls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26855 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4521 FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127254192:- chr8:127568568-128431295:+ chr8:128266437:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' medium none none none 2 1 3 1294 85 ENST00000651587.1 unknown downstream downstream mismatches(1) AGAGCGCGTGTGGCGGCCGAGCACATGGGCCCGCGGGCCGGGCGGGCTCGGGGCGGCCGGGACGAGGAGGGGCGACGACGAGCTGCGAGCAAAGATGTGCCCCGGGACCCCCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|ATTCTTTCCAAACATCGGATCCTTGGACAAAAGCAACAAAAGAGACATTCCTTGTACTAAAAAGGCTGGATACCAGTACTTCCATCAGACTCCCTATTTTAATAGCAAGCCTGGTGAGGGAGTTCCTTCTGAAGGCTCACACTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26856 TOMM34::MATN4 ENSG00000025772.8::ENSG00000124159.17 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4522 TRUE 1718 TOMM34 ENSG00000025772.8 protein_coding - - chr20:44942130-44960397:- chr20:44943012:- chr20:43570771-43589038:- chr20:43571653:- MATN4 ENSG00000124159.17 protein_coding - - chr20:45293445-45308529:- chr20:45294015:- chr20:43922085-43937169:- chr20:43922655:- chr20:44942634,chr20:44942634,chr20:44942638 chr20:45296299,chr20:45296298,chr20:45296262 NA NA chr20:43571275,chr20:43571275,chr20:43571279 chr20:43924939,chr20:43924938,chr20:43924902 NA NA sense sense stop-codon 3'UTR CDS/splice-site duplication high none Tetratricopeptide_repeat(100%)|Trimeric_coiled-coil_oligomerisation_domain_of_matrilin(100%) PABP(70%),TPR_1(100%),TPR_2(100%),TPR_8(100%)|Matrilin_ccoil(100%) 4 3 10 1356 36 ENST00000372813.4 ENST00000537548.3 upstream downstream mismatches(2) CACAGAAGCAGTGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGAAAGAACGTGAAGGCATTCTACAGACGGGCTCAAGCCCACAAAGCACTCAAG___GACTATAAATCCAGCTTTGCAGACATCAGCAACCTCCTACAGATTGAGCCTAGGAATGGTCCTGCACAGAAGTTGCGGCAGGAAGTGAAGCAGAACCTACACTAAAAACCCAACAGGGCAACTGGAACCCCTGCCTGACCTTACCCAGAGAAGCCATGGGCCACCTGCTCTGTGCCCGCTCCTGAAACCCAGCATGCCCCAA|AGGAGGGCATCAGCGCAGGGACAGAGCTTCGGAGCCCATGCGAATGCGAAAGCCTCGTGGAGTTCCAGGGCCGCACGCTGGGGGCGCTCGAGAGCCTGACGCTGAACC___TGGCCCAGCTGACGGCGCGCCTGGAGGATCTGGAGAACCAGCTGGCCAACCAGAAGTGAGGGCCACGGACGGCCCAGACCCGGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26857 TOMM34::MATN4 ENSG00000025772.8::ENSG00000124159.17 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4522 TRUE 1718 TOMM34 ENSG00000025772.8 protein_coding - - chr20:44942130-44960397:- chr20:44943453:- chr20:43570771-43589038:- chr20:43572094:- MATN4 ENSG00000124159.17 protein_coding - - chr20:45293445-45308529:- chr20:45294015:- chr20:43922085-43937169:- chr20:43922655:- chr20:44942634,chr20:44942634,chr20:44942638 chr20:45296299,chr20:45296298,chr20:45296262 NA NA chr20:43571275,chr20:43571275,chr20:43571279 chr20:43924939,chr20:43924938,chr20:43924902 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Tetratricopeptide_repeat(100%)|Trimeric_coiled-coil_oligomerisation_domain_of_matrilin(100%) PABP(68%),TPR_1(100%),TPR_2(100%),TPR_8(100%)|Matrilin_ccoil(100%) 0 1 2 972 36 ENST00000372813.4 ENST00000537548.3 upstream downstream none GAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTGTAGTAACCTGGAATCTGCCACGTACAGCAACAG___AGCACTCTGCTATTTGGTCCTGAAGCAGTACACAGAAGCAGTGAAGGACTGCACAGAAGaCCTCAAGCTGGATGGAAAGAACGTGAcGGCATTCT...ACGGGCTCAAGCCCACAAAGCACTCAAG|AGGAGGGCATCAGCGCAGGGACAGAGCTTCGGAGCCCATGCGAATGCGAAAGCCTCGTGGAGTTCCAGGGCCGCACGCTGGGGGCGCTCGAGAGCCTGACGCTGAACC___...GCGGGCTGGAGGGA?AGTGAAGGGACCTCGGCGAACCC?AACGGC...___TGGCCCAGCTGACGGCGCGCCTGGAGGATCTGGAGAACCA RAQAHKALK|rrasaqgqsfgahanakaswssraarwgrsra* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26858 TFDP2::XRN1 ENSG00000114126.18::ENSG00000114127.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2480 FALSE NA FALSE NA TFDP2 ENSG00000114126.18 protein_coding - - chr3:141944428-142149544:- chr3:141993538:- chr3:141663270-141868386:- chr3:141712380:- XRN1 ENSG00000114127.11 protein_coding - - chr3:142306607-142448062:- chr3:142426841:- chr3:142025449-142166904:- chr3:142145683:- chr3:141992519,chr3:141992523 chr3:142428489,chr3:142428490 NA NA chr3:141711361,chr3:141711365 chr3:142147331,chr3:142147332 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Exoribonuclease_Xrn1_D1_domain(100%),Exoribonuclease_Xrn1_D2/D3_domain(100%),XRN_5'-3'_exonuclease_N-terminus(54%),Xrn1_SH3-like_domain(100%),Xrn1_helical_domain(100%) |SH3_12(100%),XRN1_D1(100%),XRN1_D2_D3(100%),XRN_M(100%),XRN_N(13%) 3 3 7 255 70 ENST00000489671.6 ENST00000264951.8 upstream downstream duplicates(1) GTTCAGGAAGTGTTCTGATTGGGAGTCCATATACCCCTGCACCAGCAATGGTTACTCAGACACACATAGCAGAAGCTACTGGCTGGGTCCCTGG___TGATAGAAAACGGGCTAGAAAATTTATAGACTCTGATTTTTCAGAAAG|GTCAGCAAAGGAGGCAGAAGACAAAATTAAAAAGGCAATAGAGAAGGGAGAAACTCTTCCTACAGAGGCCAGATTTGATTCCAACTGTATCACACCAG___GAACTGAATTTATGGCCAGGTTACATGAACATCTGAAGTATTTTGTAAATATGAAAATTTCCACAGACAAGTCATG SGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSEr|SAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26861 TRAPPC9::VSTM4 ENSG00000167632.18::ENSG00000165633.13 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE TRUE 2481 FALSE NA FALSE NA TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140221459:- chr8:140739968-141468678:- chr8:141231558:- VSTM4 ENSG00000165633.13 protein_coding - - chr10:49014236-49115522:- chr10:49019775:- chr10:50222281-50323567:- chr10:50227820:- chr8:140039680,chr8:140039682 chr10:49046680,chr10:49046679 NA NA chr8:141049777,chr8:141049779 chr10:50254725,chr10:50254724 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(100%)| TRAPPC9-Trs120(100%)| 5 4 1 160 9 ENST00000648948.2 ENST00000332853.9 upstream downstream none GCCCAGTTCCCTTTGCAGCCTGGGAAGGTGGCCACGTTCACAATCAACATCAAAGTGAAGCTGGATTTCTCCTGCCAGGAGAATCTCCTGCAGGATCTCAG...GTGTGAGTGGCTTTCCCCTGTCCAGTCCTTTTCGGCAGGTCGTTCGGCCCCGAGTGGAGGGCAAACCTGTGAACCCACCCGAGAGCAACAAAGCAGGCGACTACAGCCACGTGAAG|CCAAAGATTGCTGAGGAAAACTTAACCTATGCCGAgCTGGAGCTGATCAAACCCCACCGGGCTGCCAAAGGCGCCCCCACCAGCACTGTCTACGC...CCTCTTCGAGGAGAACAAGCTGTAGTACAGCGTCCACCTCCAAGGTTCTATTTAATACCTGCCACCCAGTGATTTATGAAGCCTTGGAGACAAAGCCCTTATGTCTGTATTTTCACTCATGCCTTCTGAGTGGTGGGGAGCCCCTTTTCAGCAGCATTCTGGGTGCCTTTGAAGAGGTACAAGCCTGCTCTCCCCAA VSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVK|PKIAEENLTYAELELIKPHRAAKGAPTSTVY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26862 ENSG00000259080::PPM1G ENSG00000259080.1::ENSG00000115241.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000259080 ENSG00000259080.1 lncRNA + + chr2:27583046-27635174:+ chr2:27632670:+ chr2:27805913-27858041:+ chr2:27855537:+ PPM1G ENSG00000115241.11 protein_coding - - chr2:27381195-27409591:- chr2:27387158:- chr2:27604062-27632458:- chr2:27610025:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Protein_phosphatase_2C(95%) |PP2C(11%) 1 6 3 338 982 ENST00000505973.1 ENST00000344034.5 downstream downstream duplicates(2) TTTCCTGCCAATATTG___...GGCATAGTGACCTCACTCAATCTCTTTGCTACCAGATTTGATCAG___GTGATGAAATTTATTGAGAAGGCCCAGAACATGTCCAA|GATGCTCACAACTGTATTCCTGAGCTGGACAGTGAGACAGCCATGTTTTCTGTCTACGATGGACATGGAG___GGGAGGAAGTTGCCTTGTACTGTGCCAAATATCTTCCTGATATCATCAAAGATCAGAAGGCCTACAAGGAAG___GCTTTAGAAGATGCCTTCTTGGCTATTGACGCCAAATTGACCACTGAAGAAGTCATTAAAGAGCTGGCACAGATTGCAGGGCGACCCACTGAGGATGAAGATGAAAAAGAAAAAGTAGCTGATGAAGATGATG___TGGACAATGAGGAGGCTGCACTGCTGCATGAAGAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26863 GPN1::PPM1G ENSG00000198522.14::ENSG00000115241.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA GPN1 ENSG00000198522.14 protein_coding + + chr2:27628247-27651511:+ chr2:27632670:+ chr2:27851114-27874378:+ chr2:27855537:+ PPM1G ENSG00000115241.11 protein_coding - - chr2:27381195-27409591:- chr2:27387158:- chr2:27604062-27632458:- chr2:27610025:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Conserved_hypothetical_ATP_binding_protein(39%)|Protein_phosphatase_2C(95%) ATP_bind_1(32%),FeoB_N(0%),GTP_EFTU(32%),MMR_HSR1(38%)|PP2C(11%) 1 6 3 338 982 ENST00000264718.7 ENST00000344034.5 downstream downstream duplicates(2) TTTCCTGCCAATATTG___...GGCATAGTGACCTCACTCAATCTCTTTGCTACCAGATTTGATCAG___GTGATGAAATTTATTGAGAAGGCCCAGAACATGTCCAA|GATGCTCACAACTGTATTCCTGAGCTGGACAGTGAGACAGCCATGTTTTCTGTCTACGATGGACATGGAG___GGGAGGAAGTTGCCTTGTACTGTGCCAAATATCTTCCTGATATCATCAAAGATCAGAAGGCCTACAAGGAAG___GCTTTAGAAGATGCCTTCTTGGCTATTGACGCCAAATTGACCACTGAAGAAGTCATTAAAGAGCTGGCACAGATTGCAGGGCGACCCACTGAGGATGAAGATGAAAAAGAAAAAGTAGCTGATGAAGATGATG___TGGACAATGAGGAGGCTGCACTGCTGCATGAAGAGGC GIVTSLNLFATRFDQVMKFIEKAQNMSk|mlttvflswtvrqpcflstmdmegrklpctvpniflisskirrptrkALEDAFLAIDAKLTTEEVIKELAQIAGRPTEDEDEKEKVADEDDVDNEEAALLHEE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26864 RCAN3::GRHL3 ENSG00000117602.13::ENSG00000158055.17 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4523 FALSE NA RCAN3 ENSG00000117602.13 protein_coding + + chr1:24502351-24541040:+ chr1:24531391:+ chr1:24828841-24867530:+ chr1:24857881:+ GRHL3 ENSG00000158055.17 protein_coding + + chr1:24199558-24364482:+ chr1:24364185:+ chr1:24526048-24690972:+ chr1:24690675:+ chr1:24533271,chr1:24533272 chr1:24359533,chr1:24359531 NA NA chr1:24859761,chr1:24859762 chr1:24686023,chr1:24686021 NA NA sense sense unknown CDS/splice-site CDS/splice-site duplication high none Calcipressin(39%)| Calcipressin(81%)| 3 2 4 62 16 ENST00000616511.4 ENST00000350501.9 downstream upstream duplicates(1),multimappers(1) GCCCGGCCTCTCCAGCAG___GAAAGATTTGAAGCACTCTTCACCATCTATGATGACCAGGTTACTTTTCAGCTGTTTAAAAGCTTTAGAAGAGTCAGAATAAATTTCAGCAAACCTGAAGCGGCAGCAAGAGCGCGAATAGAACTCCACGAAACAGACTTCAATGGGCAGAAGCTAAAGCTATATTTTGCACAG|GGAAACTTCTCTCCTCCACCCACGCCTGTCTCGCCACCCCCCACCTGACTGTCTTGAATGTTCCCATCCTGTGACTCAAGTGAGGAACAaGGGTTTTGGAGATGGATTTTGGAGGCAGAGGGACCTGGATTCAAATCCCAGCCCCACCACCGTCAACAGCCTGCACTTCACTGTAAACTCGGAATGACACACCCACCTGGAGGAGAGGTGGAAGGACGACGGCAGGTCACATCTGAGAGCTC...GGTCTTGCTCTCTTGTCCAGGCTGGAATGCAGTGGCACAATCACAATCACAGCTCACTGTAGCCTTGACCTGCTGGGCTCAGTGATCCTCCCATCTCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26866 STAT3::ATP6V0A1 ENSG00000168610.16::ENSG00000033627.18 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAT3 ENSG00000168610.16 protein_coding - - chr17:42313324-42388540:- chr17:42322282:- chr17:40465342-40540558:- chr17:40474300:- ATP6V0A1 ENSG00000033627.18 protein_coding + - chr17:42458844-42522582:+ chr17:42518694:- chr17:40610862-40674600:+ chr17:40670712:- chr17:42321652,chr17:42321660 chr17:42519015,chr17:42519020 NA NA chr17:40473670,chr17:40473678 chr17:40671033,chr17:40671038 NA NA sense antisense out-of-frame CDS/splice-site 3'UTR duplication/5'-5' high none SH2_domain(100%),STAT_protein__DNA_binding_domain(100%),STAT_protein__all-alpha_domain(100%),STAT_protein__protein_interaction_domain(100%)| SH2(100%),STAT_alpha(100%),STAT_bind(100%),STAT_int(100%)| 3 1 4 455 18 ENST00000678044.1 unknown upstream downstream duplicates(2),mismatches(1) GAAGGACATCAGCG___GTAAGACCCAGATCCAGTCCGTGGAACCATACACAAAGCAGCAGCTGAACAACATGTCATTTGCTGAAATCATCATGGGCTATAAGATCATGGATGCTACCAATATCCTGGTGTCTCCACTGGTCTATCTCTATCCTGACATTCCCAAGGAGGAGGCATTCGGAAAGTATTGTCGGCCAGAGAGCCAGGAGCATCCTGAAGCTGACCCAGGTA|CTCCAGCACTTGGCAAAGGCCACCTGGTGACTCAGAGGGATTAACTGGGGCCAAAAGACATCATT...TAACAGGAACTCTGTTTCCTCGAGTGGGTGAAGGAGGAAGGAGTCTTGGGGCCGCTTCCCTTCCCTGGTGGGGGTTGTGACTGAGGGCAGGCAGTCTGGAAAGACAATTCTGGGCTGAGCTGTTTATGTAGCCTGTTCTGCCACTCTCTGTGCCGTTCAGGGCCTACAACACACATCTGTCTGACGGCCTGAATATCAG KDISGKTQIQSVEPYTKQQLNNMSFAEIIMGYKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPG|tpalgkghlvtqrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 3 (acute-phase response factor) 1 Yes T-cell large granular lymphocytic leukaemia paediatric large granular lymphocytic leukaemia leukaemia_lymphoma oncogene missense,other FALSE NA NA NA NA NA NA NA NA NA 26869 PVT1::POU5F1B ENSG00000249859.14::ENSG00000212993.6 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4524 FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ POU5F1B ENSG00000212993.6 protein_coding + - chr8:127322183-127420066:+ chr8:127362003:- chr8:128334428-128432311:+ chr8:128374249:- chr8:127886290,chr8:127886288,chr8:127886338 chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128898536,chr8:128898534,chr8:128898584 chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense antisense unknown exon/splice-site intron inversion/3'-3' low none none none 0 1 0 1294 2 ENST00000651587.1 unknown downstream downstream none CCGGCACCTTCCAGTGGATTTCCTTGCGGAAAGGATGTTGGCGGTCCCTGTGACCTGTGGAGACACGGCCAGATCTGCCCTCCA|GTTTCTGTCTATAAATAAAGTAAATCCTCCAGTACTTGCCTTGAAAAATTGTCTTACATTCACAAGAAAATATTTCAGATTATT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26883 CASC19::PVT1 ENSG00000254166.4::ENSG00000249859.14 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127886529:+ chr8:128806772-129199347:+ chr8:128898775:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site intron inversion low none none none 1 0 0 13 0 ENST00000641786.1 unknown upstream upstream none GTGAGATAGGCAG___GAGCCTGACATCATGGTGAGCATCGAGAAAGGAATAACCTAAGCTGAAGACACGCCTT[ttc]TTCAGGAGGCCAAGTTCCACGTTCTGT...GAAGTTGCACTtACCTGGCCAGCCCTGCCACTTACCAGGTTGG|ATTAAATAATTTCTATTGGCCTCTCCTCAAATTGTACTGACTCTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26884 ENSG00000267537::ZNF536 ENSG00000267537.1::ENSG00000198597.10 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000267537 ENSG00000267537.1 lncRNA - - chr19:28602379-28648303:- chr19:28648284:- chr19:29093286-29139210:- chr19:29139191:- ZNF536 ENSG00000198597.10 protein_coding + - chr19:30224891-30713586:+ chr19:30697911:- chr19:30715798-31204493:+ chr19:31188818:- chr19:28647093,chr19:28647095 chr19:30698395,chr19:30698395 NA NA chr19:29138000,chr19:29138002 chr19:31189302,chr19:31189302 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 3 0 1 3 ENST00000585394.1 unknown upstream downstream none AAAATTTAATGGTTCTTCCTAGATATTCATCCATCTAAGACTTATTGAGCACCTACTGTGTGCCAGGCACTGCTCTGGGAACTGCAGCCACGTGAACAAAGCCATGTAAATAAAGCTGGGACAGAACACAGTTCAGCTTTGCCTTCTACTGACAGGTGGCAAGTCCTCAG|GAAGAAACCAACACCCCACATCAAGAGATGCTTCCAAAGTCACAGAACCAAACAG___GTTTTGGAGCTGCTAAACTAAGATGATCAGCTTAATCACCAGGCACCATCGTTTTCAACTACTTGAATAAATCCAGAGGAATTATAAACGGAGCCCGTGTGTAATTAAAGTGAGGGTTGTTAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26885 AP5B1::PCAT1 ENSG00000254470.3::ENSG00000253438.5 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA AP5B1 ENSG00000254470.3 protein_coding - - chr11:65773898-65780976:- chr11:65780442:- chr11:65541369-65548447:- chr11:65547913:- PCAT1 ENSG00000253438.5 lncRNA + - chr8:126556323-127419050:+ chr8:127254192:- chr8:127568568-128431295:+ chr8:128266437:- chr11:65780247,chr11:65780251 chr8:127385968,chr8:127385969 NA NA chr11:65547718,chr11:65547722 chr8:128398213,chr8:128398214 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 2 0 137 85 ENST00000532090.3 unknown upstream downstream none CGCGCTCCCGGTGGCTGCGGCCTGAGGGTCCCTCTTCCCTGCGCAGGGGCCCGCGCGCCTCACCATGGGGCCCCTGAGCCGGGACcCggGGGg???G?G...CGAGGGGGAGGATTTGGGTCGCGACCTGCTGAGCGACCTGAGAAGTGAGAAGCTGAGCGAACAGACCAAG|ATTCTTTCCAAACATCGGATCCTTGGACAAAAGCAACAAAAGAGACATTCCTTGTACTAAAAAGGCTGGATACCAGTACTTCCATCAGACTCCCTATTTTAATAGCAAGCCTGGTG EGEDLGRDLLSDLRSEKLSEQTK|ilskhrilgqkqqkrhsly* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26901 PDE4D::CENPF ENSG00000113448.21::ENSG00000117724.15 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59988488:- chr5:58264865-59817947:- chr5:59284315:- CENPF ENSG00000117724.15 protein_coding + + chr1:214603185-214664574:+ chr1:214629046:+ chr1:214776528-214837917:+ chr1:214802389:+ chr5:59975723,chr5:59975725 chr1:214625950,chr1:214625948 NA NA chr5:59271550,chr5:59271552 chr1:214799293,chr1:214799291 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation medium none |Leucine-rich_repeats_of_kinetochore_protein_Cenp-F/LEK1(100%),Rb-binding_domain_of_kinetochore_protein_Cenp-F/LEK1(100%) |CENP-F_C_Rb_bdg(100%),CENP-F_leu_zip(100%) 3 0 1 27 614 ENST00000502484.6 ENST00000366955.8 upstream upstream none GAGACTTTCATGTCGCAATATTCAGCTTCCCCCTCTCGCCTTCAGACAGTTGGAACAAGCTGACTTGAAAAGTGAATCAGAGAACATTCAACGACCAACCAGCCTCCCCCTGAAGATTCTGCCGCTGATTGCTATCACTTCTGCAGAATCCAGTGG|TATACTGCATTGGAACAAAAACTGAAAAAATTGACGGAAG...TTTGAGTTGTCAGCGACAAAATGCAGAAAGTGCCAGATGTTCTCTGGAACAGAAAATTAAGGAAAAAGAAAAGGAGTTTCAAGAG___GAGCTCTCCCGTCAAC RLSCRNIQLPPLAFRQLEQADLKSESENIQRPTSLPLKILPLIAITSAESSg|ilhwnkn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26906 INPP4A::RAD54B ENSG00000040933.16::ENSG00000197275.14 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA INPP4A ENSG00000040933.16 protein_coding + + chr2:98444854-98594392:+ chr2:98555808:+ chr2:99061317-99210855:+ chr2:99172271:+ RAD54B ENSG00000197275.14 protein_coding - + chr8:94371960-94475115:- chr8:94425256:+ chr8:95384188-95487343:- chr8:95437484:+ chr2:98559044,chr2:98559041,chr2:98559036 chr8:94402120,chr8:94402114,chr8:94402114 NA NA chr2:99175507,chr2:99175504,chr2:99175499 chr8:95414348,chr8:95414342,chr8:95414342 NA NA sense antisense out-of-frame CDS intron translocation/5'-5' medium none none C2(100%)| 1 0 2 248 1 ENST00000409851.8 unknown downstream upstream none CAGCTGCACCAGCAAGAAAGGTAACCCGGACAGCCACGCCTACTGGATCAGACCAGAAGACCCCTTCTGTGATGTCCCCTCCTCACCATGCCCCTCCACCATGCCCTCCACTGCATGCCATCCTCATCTGACCACAC|AGGTCTTCAGGTTGGTCTCCAACTCCTGGACTCAAGCAATCCTCCTGCCTCAGCCTCACAAcGTG SCTSKKGNPDSHAYWIRPEDPFCDVPSSPCPSTMPSTACHPHLTT|qvfrlvsnswtqaillpqphn NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26908 EEF2K::UQCRC2 ENSG00000103319.12::ENSG00000140740.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4530 FALSE NA EEF2K ENSG00000103319.12 protein_coding + + chr16:22206278-22288738:+ chr16:22273750:+ chr16:22217599-22300059:+ chr16:22285071:+ UQCRC2 ENSG00000140740.11 protein_coding + + chr16:21953288-21983660:+ chr16:21980547:+ chr16:21964609-21994981:+ chr16:21991868:+ chr16:22274332,chr16:22274323 chr16:21976446,chr16:21976434 NA NA chr16:22285653,chr16:22285644 chr16:21987767,chr16:21987755 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Alpha-kinase_family(100%),Sel1_repeat(66%)|Peptidase_M16_inactive_domain(3%) Alpha_kinase(100%),Sel1(100%)|Peptidase_M16_C(14%) 0 1 2 169 990 ENST00000263026.10 ENST00000268379.9 downstream upstream none CGCAGCCAACCTGGGCGAGCTGGAGGCCATCGTGGGCCTGGGACTCATGTACTCGCAGTTGCCTCATCACATCCTAGCCGATGTCTCTCTGAAG___GAGACAG...TTTGACTCTGGCCAGAACCTCAGCCCGGACAG|GAACAAGCTGAAAGCTGGATACCTAATGTCAGTGGAGTCTTCTGAGTGTTTCCTGGAAGAAGTCGGGTCCCAGGCTCTAGTTGCTGGTTCTTACATGCCACCATCCACAGTCCTTC FDSGQNLSPDr|NKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Eukaryotic elongation factor 2 kinase Atypical Alpha eEF2K O00418 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 22276201 FALSE 21982846 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26913 TMEM131L::ENSG00000280241 ENSG00000121210.16::ENSG00000280241.4 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4532 TRUE 1719 TMEM131L ENSG00000121210.16 protein_coding + + chr4:153466346-153636711:+ chr4:153473888:+ chr4:154387498-154557863:+ chr4:154395040:+ ENSG00000280241 ENSG00000280241.4 lncRNA + + chr4:153948718-154300500:+ chr4:154206968:+ chr4:154869870-155221652:+ chr4:155128120:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion medium none none none 1 1 0 134 2 ENST00000409663.7 ENST00000660197.1 downstream upstream none CGGAGAGGAGCGCGAGCAGCAGCATGGCGGGGCTCCGACGCCCGCAGCCCGGCTGCTACTGCCGCACCGCcGCGGCCGTGAACCTCCTGCTGGGCGTCTTC...GGGAACTCCTGCTGCCCACTCAG___GGTGATTCTGAAGAGGGTCTGGAGGAGCCTTCTCAAGAACAGAG|ATTTACAACTTCAGGGAGACAAAGGAAACTCCAGCTCATCTCCCACATCATTGATTGAGAGGACCATTTTCTGAC...ACTAAATGTATGCTGAGATCTGGCTTCACGGTCGAGGGTGTTGCTGGTTTTCAATGTGCCTGACATAGGATCAATGGTGAATGC ELLLPTQGDSEEGLEEPSQEQr|fttsgrqrklqlishiid* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26914 TMEM131L::ENSG00000280241 ENSG00000121210.16::ENSG00000280241.4 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4532 TRUE 1719 TMEM131L ENSG00000121210.16 protein_coding + + chr4:153466346-153636711:+ chr4:153473888:+ chr4:154387498-154557863:+ chr4:154395040:+ ENSG00000280241 ENSG00000280241.4 lncRNA + + chr4:153948718-154300500:+ chr4:154142116:+ chr4:154869870-155221652:+ chr4:155063268:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion low none none none 2 0 0 134 3 ENST00000409663.7 ENST00000660197.1 downstream upstream none CGCGAGCAGCAGCATGGCGGGGCTCCGACGCCCGCAGCCCGGCTGCTACTGCCGCACCGCcGCGGCCGTGAACCTCCTGCTGGGCGTCTTCCAGGTCCTGCTGCCCTGCTGTCGCCCGGGAGGGGC...GAAGAAGGGGAACTCCTGCTGCCCACTCAG___GGTGATTCTGAAGAGGGTCTGGAGGAGCCTTCTCAAGAACAGAG|GACTGCGTGCAATTCTACTTGGAGATCTTCATAACACCTTAA EEGELLLPTQGDSEEGLEEPSQEQr|tacnstwrss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26915 MSH2::KCNK12 ENSG00000095002.15::ENSG00000184261.5 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MSH2 ENSG00000095002.15 protein_coding + + chr2:47403067-47663146:+ chr2:47445657:+ chr2:47630206-47890285:+ chr2:47672796:+ KCNK12 ENSG00000184261.5 protein_coding - - chr2:47509290-47570985:- chr2:47521808:- chr2:47736429-47798124:- chr2:47748947:- chr2:47461453,chr2:47461440 chr2:47524480,chr2:47524493 NA NA chr2:47688592,chr2:47688579 chr2:47751619,chr2:47751632 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none MutS_domain_I(100%),MutS_domain_II(100%),MutS_domain_III(41%)|Ion_channel(85%) MutS_I(100%),MutS_II(100%),MutS_III(51%)|Ion_trans_2(0%) 3 10 15 364 25 ENST00000644092.1 ENST00000327876.5 downstream downstream mismatches(1) CAGCAAACTTACAAGATTGTTACCGACTCTATCAGGGTATAAATCAACTACCTAATGTTATACAGGCTCTGGAAAAACATGAAG___GAAAACACCAGAAATTATTGTTGGCAGTTTTTGTGACTCCTCTTACTGATCTTCGTTCTGACTTCTCCAAGTTTCAGGAAATGATAGAAACAACTTTAGATATGGATCAG|GTTTCGGCATGACCACCCCCGCGACGGTGGGCGGGAAGGCCTTCCTCATCGCCTACGGGCTGTTCGGCTGCGCTGGGACCATCCTGTTCTTCAACCTCTTCCTGGAGCGCATCATCTCGCTGCTGGCCTTCATCATGCGCGCCTGCCGGGAGCGCCAGCTGCGCCGCAGCGGCCTGCTGCCCGCCACCTTCCGCCGCGGCTCCGCGCTCTCGGAGGCCGACAGCCTGGCGGGCTGGAAGCCCTCGGTGTACCACGTGCTGCTCATCCTGGGCCTGTTCGCCGTGCTGCTGTCCTGCTGCGCCTCGG ANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQ|vsa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mutS homolog 2 (E. coli) 1 Yes colorectal, endometrial, ovarian colorectal, endometrial, ovarian hereditary non-polyposis colorectal cancer epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 26918 CASC19::CAPN1 ENSG00000254166.4::ENSG00000014216.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127213701:- chr8:128084939-128239786:- chr8:128225946:- CAPN1 ENSG00000014216.16 protein_coding + + chr11:65180566-65212006:+ chr11:65204905:+ chr11:64948037-64979477:+ chr11:64972376:+ NA NA NA NA NA NA NA NA sense sense unknown intron intron translocation low none |Calpain_large_subunit__domain_III(47%),EF-hand_domain_pair(100%) |Calpain_III(9%),EF-hand_8(100%) 0 0 3 1 9 unknown unknown upstream upstream none CTAGGAGTAAAACGTACCCCTAGTAAAACATAGCAGGGGTACGTGTTAGTACTGGGCACTAAAACATACTTATCTCATT...|...CCTGGCGCCCCCGACCCGCAGTGCAGGCGGGCTTCCACCAGGGGGCGCCAGGGACCATGCCCTTCCCCACAAATTCCCCTCCACTCCCCCCACCATC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26919 RECQL5::SMIM5 ENSG00000108469.15::ENSG00000204323.5 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RECQL5 ENSG00000108469.15 protein_coding - - chr17:75626845-75667189:- chr17:75651186:- chr17:73622925-73663269:- chr17:73647266:- SMIM5 ENSG00000204323.5 protein_coding + + chr17:75633434-75641404:+ chr17:75634034:+ chr17:73629514-73637484:+ chr17:73630114:+ chr17:75634935,chr17:75634897,chr17:75634889 chr17:75633895,chr17:75633895,chr17:75633895 NA NA chr17:73631015,chr17:73630977,chr17:73630969 chr17:73629975,chr17:73629975,chr17:73629975 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site inversion low none DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%),RecQ_zinc-binding(63%)|Domain_of_unknown_function_(DUF4713)(100%) DEAD(100%),Helicase_C(100%),RecQ_Zn_bind(26%),ResIII(100%)|DUF4713(100%),RecQ_Zn_bind(90%) 3 0 0 88 2 ENST00000317905.10 ENST00000581115.1 upstream upstream none GATGGGAAGCCTTCCTGGTGCCGTCTCTATTACTCCAGGAATGACCGGGACCAAGTCAGCTTCCTGATCAGGAAGGAAGTAGCAAAACTCCAG___GAAAAGAGAGGAAACAAAGCATCTGATAAAGCCACTATCATGGCCTTTGATGCCCTGGTGACCTTCTGTGAAGAACTGGG|GACGACCAACAACAAAAAAGCCAGGCAGAGA DGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQEKRGNKASDKATIMAFDALVTFCEELg|ttnnkkarq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26926 IFRD1::ZNF277 ENSG00000006652.15::ENSG00000198839.10 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA IFRD1 ENSG00000006652.15 protein_coding + + chr7:112422887-112481017:+ chr7:112423432:+ chr7:112062942-112121072:+ chr7:112063487:+ ZNF277 ENSG00000198839.10 protein_coding + + chr7:112206695-112343934:+ chr7:112337730:+ chr7:111846750-111983989:+ chr7:111977785:+ chr7:112447695,chr7:112447696 chr7:112337566,chr7:112337564 NA NA chr7:112087750,chr7:112087751 chr7:111977621,chr7:111977619 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none |C2H2_type_zinc-finger_(2_copies)(40%) |zf-C2H2_2(6%) 1 0 1 8 103 ENST00000675578.1 ENST00000361822.8 downstream upstream none GGTTGTTCCAGAGGGATGTGTGTAATTCCTCCCAGTATTTGATGTTCCTTTATTACTTATTTTCACTTGAGCCAACAGCCTGAACTGGTCAGGCTTTGGGCTGATGCCAGCTGCTTTATCTGGTAGCACTGTTACATAAAATTAA...GCCAACATTATGCaAAGAACTTTACGTGGACAcCCCATTTAATTCTCAGAAGCCGATCACAAG|TGACTGGTCTGATTGGGAAGAACACCCTGCCTCTGCA...CTTATTTTGTGAAAAGCAAGCAGAAACAATTGAGAAGTTGTATGTCCACATGGAG___GATGCACACGAATTTGATCTTCTCAAAATAAAGTCAGAACTTG___GAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26934 CYTH1::PRPSAP1 ENSG00000108669.18::ENSG00000161542.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2484 TRUE 4534 TRUE 1720 CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78782202:- chr17:76670130-76778379:- chr17:76778284:- PRPSAP1 ENSG00000161542.17 protein_coding - - chr17:76309478-76384521:- chr17:76344737:- chr17:74305559-74380602:- chr17:74340818:- chr17:78779820,chr17:78779825 chr17:76347114,chr17:76347116 NA NA chr17:76775902,chr17:76775907 chr17:74343195,chr17:74343197 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high Mitelman |N-terminal_domain_of_ribose_phosphate_pyrophosphokinase(72%),Phosphoribosyl_synthetase-associated_domain(100%) |Pribosyl_synth(100%),Pribosyltran_N(61%) 14 63 13 98 350 ENST00000589296.5 ENST00000446526.8 upstream downstream duplicates(5),mismatches(9) GCGGGGGCGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTACG|AAACAAGAGTTGAAATAAAAGAATCTGTTCGTGGCCAAGATATTTTCATTATACAGACAATACCCAG___AGATGTGAATACAGCTGTGATGGAGTTGCTCATCATGGCTTACGCACTGAAGACTGCCTGTGCCAGGAACATTATTGGGGTCATCCCCTACTTCCCCTACAGCAAGCAGAGCAAGATGAGGAAGAGGGGTTCCATTGTGTGCAAGCTGCTAGCATCCATGCTGGCGAAAGCAG___GTTTAACTCACATTATCACTATGGATCTTCATCAAAAGGAAAT MEEDDSY|eTRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26935 CYTH1::PRPSAP1 ENSG00000108669.18::ENSG00000161542.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2485 TRUE 4534 TRUE 1720 CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78782202:- chr17:76670130-76778379:- chr17:76778284:- PRPSAP1 ENSG00000161542.17 protein_coding - - chr17:76309478-76384521:- chr17:76332435:- chr17:74305559-74380602:- chr17:74328516:- chr17:78779820,chr17:78779825 chr17:76347114,chr17:76347116 NA NA chr17:76775902,chr17:76775907 chr17:74343195,chr17:74343197 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high Mitelman |N-terminal_domain_of_ribose_phosphate_pyrophosphokinase(52%),Phosphoribosyl_synthetase-associated_domain(100%) |Pribosyl_synth(100%),Pribosyltran_N(7%) 0 10 10 98 493 ENST00000589296.5 ENST00000446526.8 upstream downstream mismatches(2) GCTGAGGCGAGCGGGGGCGCGGGTGGCGCGGCGGGACGCGAGCGGCGAGCCGGAGCGCGGAGCCCGGCTCCCGCACCATGGAGGAGGACGACAGCTACG|AGATGTGAATACAGCTGTGATGGAGTTGCTCATCATGGCTTACGCACTGAAGACTGCCTGTGCCAGGAACATTATTGGGGTCATCCCCTACTTCCCCTACAGCAAGCAGAGCAAGATGAGGAAGAGGGGTTCCATTGTGTGCAAGCTGCTAGCATCCATGCTGGCGAAAGCAG___GTTTAACTCACATTATCACTATGGATCTTCATCAAAAGGAAATACAAGGCTTTTTCAGCTTTCCTGT MEEDDSY|em* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26936 PPAT::AASDH ENSG00000128059.8::ENSG00000157426.14 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4535 TRUE 1721 PPAT ENSG00000128059.8 protein_coding - - chr4:56393362-56435615:- chr4:56435350:- chr4:57259528-57301781:- chr4:57301516:- AASDH ENSG00000157426.14 protein_coding - - chr4:56338287-56387508:- chr4:56382597:- chr4:57204453-57253674:- chr4:57248763:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |AMP-binding_enzyme(84%),PQQ-like_domain(100%),Phosphopantetheine_attachment_site(100%) |AMP-binding(94%),PP-binding(100%),PQQ_2(100%),PQQ_3(100%) 39 12 25 650 116 ENST00000264220.6 ENST00000451613.5 upstream downstream duplicates(4),low_entropy(1),mismappers(2),mismatches(14) CTGGCAGCTGGTTGGTGCTTACACCTTGGCCGCAGCGGCAGGTCCTTCCACGTGCTTTCGGCGGCGACATGGAGCTGGAGGAGTTGGGGATCCGAGAGGAATGTGGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGCCCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCG|AATTCTCCAAGTCCCGGCTGCTTATGTACCTATCGAGCCAGATTCACCACCGTCATTATCAACTCATTTTATGAAAAAATGTAATCTAAAGTATATCCTTGTTGAAAAAAAACAAATTAAT___AAATTTAAATCTTTTCATGAAACATTATTGAACTATGATACATTTACAGTGGAACATAATGACCTAGTGCTCTTCAGACTTCACT MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHr|ILQVPAAYVPIEPDSPPSLSTHFMKKCNLKYILVEKKQINKFKSFHETLLNYDTFTVEHNDLVLFRLH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26937 PPAT::AASDH ENSG00000128059.8::ENSG00000157426.14 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4535 TRUE 1721 PPAT ENSG00000128059.8 protein_coding - - chr4:56393362-56435615:- chr4:56435350:- chr4:57259528-57301781:- chr4:57301516:- AASDH ENSG00000157426.14 protein_coding - - chr4:56338287-56387508:- chr4:56378464:- chr4:57204453-57253674:- chr4:57244630:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |AMP-binding_enzyme(75%),PQQ-like_domain(100%),Phosphopantetheine_attachment_site(100%) |AMP-binding(80%),PP-binding(100%),PQQ_2(100%),PQQ_3(100%) 0 1 11 650 60 ENST00000264220.6 ENST00000503808.5 upstream downstream mismatches(1) CTGTCGCGAGCGCGAGCTTCTGAGCTCGACGGGCCGAGCTGGCAGCTGGTTGGTGCTTACACCTTGGCCGCAGCGGCAGGTCCTTCCACGTGCTTTCGGCGGCGACATGGAGCTGGAGGAGTTGGGGATCCGAGAGGAATGTGGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGCCCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCG|AAATTTAAATCTTTTCATGAAACATTATTGAACTATGATACATTTACAGTGGAACATAATGACCTAGTGCTCTTCAGACTTCACTGGAAAAATACTGAGGTGAACTTGATGCTAAATGATGGAAAAGAGAAATATGAAAAAGAAAAAATAAAAAGCATAAGTTCTGAGCATGTCAATGAAGAAAAAGCAGAAGAACACATGGATCTGAGGCTAAAGCATTGCTTAGCCTATGTTCTACATACATCAGGGACTACAGGGATACCGAAGATTGTCAGAGTGCCTCATAAGTGTATAGTACCAAATATCCAGCATTTTCG___GGTACTTTTTGACATCACACAAGAAGATGTTTTGTTTCTGGCTTCACCTCTG MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHr|NLNLFMKHY* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26938 PPAT::AASDH ENSG00000128059.8::ENSG00000157426.14 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4535 TRUE 1721 PPAT ENSG00000128059.8 protein_coding - - chr4:56393362-56435615:- chr4:56435350:- chr4:57259528-57301781:- chr4:57301516:- AASDH ENSG00000157426.14 protein_coding - - chr4:56338287-56387508:- chr4:56371643:- chr4:57204453-57253674:- chr4:57237809:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |AMP-binding_enzyme(51%),PQQ-like_domain(100%),Phosphopantetheine_attachment_site(100%) |AMP-binding(58%),PP-binding(100%),PQQ_2(100%),PQQ_3(100%) 0 3 1 650 98 ENST00000264220.6 ENST00000451613.5 upstream downstream none GGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGCCCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCG|GGTACTTTTTGACATCACACAAGAAGATGTTTTGTTTCTGGCTTCACCTCTGACCTTCGATCCTTCTGTTGTGGAAATATTTCTTGCTCTATCAAGTGGTGCCTCTCTGCTTATTGTtCCAACTTCCGTCAAGTTGC GVFGCIASGEWPTQLDVPHVITLGLVGLQHr|VLFDITQEDVLFLASPLTFDPSVVEIFLALSSGASLLIVPTSVKL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26939 PPAT::AASDH ENSG00000128059.8::ENSG00000157426.14 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4535 TRUE 1721 PPAT ENSG00000128059.8 protein_coding - - chr4:56393362-56435615:- chr4:56435350:- chr4:57259528-57301781:- chr4:57301516:- AASDH ENSG00000157426.14 protein_coding - - chr4:56338287-56387508:- chr4:56355423:- chr4:57204453-57253674:- chr4:57221589:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none |AMP-binding_enzyme(36%),PQQ-like_domain(100%),Phosphopantetheine_attachment_site(100%) |AMP-binding(4%),PP-binding(100%),PQQ_2(100%),PQQ_3(100%) 1 0 1 650 117 ENST00000264220.6 ENST00000451613.5 upstream downstream low_entropy(1) CGGCGACATGGAGCTGGAGGAGTTGGGGATCCGAGAGGAATGTGGCGTGTTCGGGTGCATCGCCTCAGGAGAGTGGCCCACGCAGCTGGATGTACCGCATGTGATCACTCTGGGACTCGTGGGGCTGCAGCACCG|GCAACACCAACATTGCTTAGAAGATTTGGATCTCAGCTTATCAAGTCAACTGTTTTGT...CAAATATTTAATGTTTATGGTATCACAGAGGTATCAAGTTGGGCGACCATTTATAGGATTCaAGAGAAGACTaTTAACTCTACTCTCAA___ATGTGAATTGCC MELEELGIREECGVFGCIASGEWPTQLDVPHVITLGLVGLQHr|qhqhcledldlslssqlf NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26940 EXOC7::CYTH1 ENSG00000182473.22::ENSG00000108669.18 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2486 TRUE 4536 TRUE 1722 EXOC7 ENSG00000182473.22 protein_coding - - chr17:76081016-76121576:- chr17:76097796:- chr17:74077097-74117657:- chr17:74093877:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78709732:- chr17:76670130-76778379:- chr17:76705814:- chr17:76096365,chr17:76096372 chr17:78779811,chr17:78779815 NA NA chr17:74092446,chr17:74092453 chr17:76775893,chr17:76775897 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |PH_domain(100%),Sec7_domain(100%) |PH(100%),Sec7(100%) 34 14 16 522 134 ENST00000589210.6 ENST00000446868.8 upstream downstream duplicates(4),low_entropy(1),mismatches(6) CCCAGACAGCCCGGAACTCAACAAAGTG___AAACTGCTCTTTGAGCGCGGGAAGGAGGCCCTGGAGTCCGAATTTCGCAGCCTGATGACGCGGCACAGTAAGGTCGTCTCGCCCGTGCTCATCTTGGATCTGATCAGTGGTGACGATGATCTGGAGGCCCAGGAGGACGTGACCCTGGAGCACCTGCCCGAGAGCGTGCTCCAGGATGTCATTCGCATCTCCCGCTGGCTGGTGGAATATGGCCGCAACCAAG|TTCCCAGTGACCTGACAGCAGAGGAGCGTCAAGAACTGGAGAACATCCGACGGAGAAAACAGGAGCTGCTGGCTGACATTCAG___AGGCTGAAGGATGAGATAGCAGAAGTAGCTAATGAAATTGAAAACCTGGGATCCACAGAGGAAAG___GAAAAACATGCAGAGGAACAAACAGGTAGCCA PDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDLEAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQ|vPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6868 chr17:76098019-76098076:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26941 EXOC7::CYTH1 ENSG00000182473.22::ENSG00000108669.18 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4536 TRUE 1722 EXOC7 ENSG00000182473.22 protein_coding - - chr17:76081016-76121576:- chr17:76097796:- chr17:74077097-74117657:- chr17:74093877:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78702604:- chr17:76670130-76778379:- chr17:76698686:- chr17:76096365,chr17:76096372 chr17:78779811,chr17:78779815 NA NA chr17:74092446,chr17:74092453 chr17:76775893,chr17:76775897 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |PH_domain(100%),Sec7_domain(100%) |PH(100%),Sec7(100%) 1 0 2 522 212 ENST00000589210.6 ENST00000446868.8 upstream downstream mismatches(1) GGCCAAGATTCAGAAGGCAGTGGAGTATTTCCAGGACAACAGCCCAGACAGCCCGGAACTCAACAAAGTG___AAACTGCTCTTTGAGCGCGGGAAGGAGGCCC...CAGTAAGGTCGTCTCGCCCGTGCTCATCTTGGATCTGATCAGTGGTGACGATGATCTGGAGGCCCAGGAGGACGTGACCCTGGAGCACCTGCCCGAGAGCGTGCTCCAGGATGTCATTCGCATCTCCCGCTGGCTGGTGGAATATGGCCGCAACCAAG|GAAAAACATGCAGAGGAACAAACAGGTAGCCATGGGCAGGAAAAAATTTAATATGGACCCTAAAAAG___GGGATCCAGTTCTTAATAGAGAACGACCTCCTGAAGAACACTTGTGA SKVVSPVLILDLISGDDDLEAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQ|gktcrgtnr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6868 chr17:76098019-76098076:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26942 RANBP2::CCDC138 ENSG00000153201.17::ENSG00000163006.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4537 TRUE 1723 RANBP2 ENSG00000153201.17 protein_coding + + chr2:108719482-108785810:+ chr2:108775936:+ chr2:109335938-109402266:+ chr2:109392392:+ CCDC138 ENSG00000163006.12 protein_coding + + chr2:108786757-108885477:+ chr2:108812631:+ chr2:109403213-109501933:+ chr2:109429087:+ chr2:108777043 chr2:108811077 NA NA chr2:109393499 chr2:109427533 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none Nup358/RanBP2_E3_ligase_domain(100%),RanBP1_domain(75%),Zn-finger_in_Ran_binding_protein_and_others(100%)| IR1-M(100%),Ran_BP1(27%),TPR_8(100%),zf-RanBP(100%)| 23 14 13 422 192 ENST00000283195.11 ENST00000412964.6 downstream upstream duplicates(1),mismappers(1),mismatches(2) AGAGCTTCAAAAAGTTCAGGAAGCTCAA___AAATCTCAGACAGAAGAAATAACTAGCACAACTGACAGTGTATATACAGGTGGGACTGAAGTGATGGTACCTTCTTTCTGTAAATCTGAAGAACCTGATTCTATTACCAAATCCATTAGTTCACCATCTGTTTCCTCTGAAACTATGGACAAACCTGTAGATTTGTCAACTAGAAAGGAAATTGATACAGATTCTACAAGCCAAG|TTAAATGAAGCAAGTGAAGAAAACAGGAAGATAGACATTCAGGCTAAAAGAGTTCAAGCTCGTTTAGATAATTTACAG___AGGAAGTACGAGTTTATGACAATACAGAGATTGAAAGGAAGTTCCCATGCTGTTCATGAAATGAAAAGTTTAAAACAAGAAAAAGCACCA ELQKVQEAQKSQTEEITSTTDSVYTGGTEVMVPSFCKSEEPDSITKSISSPSVSSETMDKPVDLSTRKEIDTDSTSQ|vk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAN binding protein 2 1 Yes inflammatory myofibroblastic tumour mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26943 RANBP2::CCDC138 ENSG00000153201.17::ENSG00000163006.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4537 TRUE 1723 RANBP2 ENSG00000153201.17 protein_coding + + chr2:108719482-108785810:+ chr2:108773046:+ chr2:109335938-109402266:+ chr2:109389502:+ CCDC138 ENSG00000163006.12 protein_coding + + chr2:108786757-108885477:+ chr2:108812631:+ chr2:109403213-109501933:+ chr2:109429087:+ chr2:108777043 chr2:108811077 NA NA chr2:109393499 chr2:109427533 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Nup358/RanBP2_E3_ligase_domain(96%),RanBP1_domain(75%),Zn-finger_in_Ran_binding_protein_and_others(100%)| IR1-M(24%),Ran_BP1(27%),TPR_8(100%),zf-RanBP(100%)| 0 2 1 452 192 ENST00000283195.11 ENST00000412964.6 downstream upstream none AAAAATGTAGACCCTTGGAAGAAAATACAGCAG___ATAATGAGAAAGAATGTATTATTGTTTGGGAAAAGAAACCAACAGTTGAAGAGAAGGCAAAAGCAGAT...GTGGAGTCTGTAGTGATACTGATGAAGACAATGGAAATGGGGAaGACTTTCAATCAGAGCTTCAAAAAGTTCAGGAAGCTCAA|TTAAATGAAGCAAGTGAAGAAAACAGGAAGATAGACATTCAGGCTAAAAGAGTTCAAGCTCGTTT...AGTACGAGTTTATGACAATACAGAGATTGAAAGGAAGTTCCCATGCTGTTCATGAAATGAAAAGTTTAAAACAAGAAAAAGCACCAGTTTCAAAAACTTACAAG___GTACCACTTAATGGGCAAGTTTATGAACTTTTAACTGTCTTCATGGACTGGATTTCGGATCATCATCTTAGCAAAGTGAAACATGAAGAATCTGGAATGGATGGTAAAAAACCACAACTCAAATTTGC?TCCCAG GVCSDTDEDNGNGEDFQSELQKVQEAQ|LNEASEENRKIDIQAKRVQAR NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAN binding protein 2 1 Yes inflammatory myofibroblastic tumour mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 26945 SEPTIN10::LIMS1 ENSG00000186522.15::ENSG00000169756.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SEPTIN10 ENSG00000186522.15 protein_coding - - chr2:109542799-109614143:- chr2:109565763:- chr2:110300376-110371720:- chr2:110323340:- LIMS1 ENSG00000169756.17 protein_coding + - chr2:108533671-108687246:+ chr2:108634317:- chr2:109150127-109303702:+ chr2:109250773:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Septin(83%)| Septin(95%)| 9 28 5 725 154 ENST00000397712.7 unknown upstream downstream duplicates(1),low_entropy(2),mismatches(6) GGGACAGTTGCCGTTTGCTGTTGTGGGAAGTATGGATGAGGTAAAAGTCGGAAACAAGATGGTCAAAGCTCGCCAGTACCCTTGGGGTGTTGTACAAG|ACATTAAATTGAACAGCTGGCATGCTGAATTAACATGAGAGTCACTGAAAACTGAGTGCTGCATGAGAGCTGGCAGCTGGCACACCAGAGAGCCCTGCAGTCCTTCTTCCCTCCCCCTACAGACATCCTGCTAGAAGGAGACCCCAACCTGACACA GQLPFAVVGSMDEVKVGNKMVKARQYPWGVVQ|diklnswhaelt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26946 GCC2::SEPTIN10 ENSG00000135968.22::ENSG00000186522.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2488 FALSE NA FALSE NA GCC2 ENSG00000135968.22 protein_coding + + chr2:108449107-108509415:+ chr2:108499754:+ chr2:109065563-109125871:+ chr2:109116210:+ SEPTIN10 ENSG00000186522.15 protein_coding - - chr2:109542799-109614143:- chr2:109565859:- chr2:110300376-110371720:- chr2:110323436:- chr2:108501307 chr2:109566197 NA NA chr2:109117763 chr2:110323774 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none GRIP_domain(100%),Rab_binding_domain(100%)|Septin(28%) GRIP(100%),Rab_bind(100%)|Septin(5%) 24 7 8 161 609 ENST00000687399.1 ENST00000397712.7 downstream downstream duplicates(4),inconsistently_clipped(1),mismatches(12) AAAGGAATCAAGAGCGAGAGAAGTCTGCAGCTAACCTGGAATACTTGAAGAACGTCTTGCTGCAGTTCATTTTCTTGAAACCAGGTAGTGAAAGAGAGAGACTTCTTCCTGTTATAAATACGATGTTGCAGCTCAGCCCTGAAGAAAAGGGAAAACTTGCTGCGGTTGCTCAAG|GGACAGTTGCCGTTTGCTGTTGTGGGAAGTATGGATGAGGTAAAAGTCGGAAACAAGATGGTCAAAGCTCGCCAGTACCCTTGGGGTGTTGTACAAG RNQEREKSAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLAAVAQ|gtvavcccgkyg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26947 SEPTIN10::GCC2 ENSG00000186522.15::ENSG00000135968.22 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEPTIN10 ENSG00000186522.15 protein_coding - - chr2:109542799-109614143:- chr2:109613798:- chr2:110300376-110371720:- chr2:110371375:- GCC2 ENSG00000135968.22 protein_coding + - chr2:108449107-108509415:+ chr2:108481646:- chr2:109065563-109125871:+ chr2:109098102:- chr2:109564825,chr2:109564825,chr2:109564825,chr2:109564825,chr2:109564825,chr2:109564825,chr2:109566113,chr2:109564788,chr2:109566128 chr2:108493839,chr2:108493841,chr2:108493787,chr2:108493793,chr2:108493837,chr2:108493838,chr2:108501295,chr2:108493766,chr2:108501307 NA NA chr2:110322402,chr2:110322402,chr2:110322402,chr2:110322402,chr2:110322402,chr2:110322402,chr2:110323690,chr2:110322365,chr2:110323705 chr2:109110295,chr2:109110297,chr2:109110243,chr2:109110249,chr2:109110293,chr2:109110294,chr2:109117751,chr2:109110222,chr2:109117763 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none none none 4 4 10 408 20 ENST00000397712.7 unknown upstream downstream duplicates(1),mismatches(1) CGCCCCGCCCGTTGCTTCaGCCCTCCGGCCTTCCCGCCGCCGTCGCCGGGACCAGCCGCTCGGGGCCGGGCTGATACAGCCGCTTCACCGTGCCCCTGCCCGCGACCATGGCCTCCTCCGAGGTGGCGCGGCACCTG|GTCAGACTTCATCATCAAGCCACCTTAAGATTCATGAGTCCATTCTGGATGCTTAAAATATTTACCCAAGTTGAACAGAATACCTAACTGGCATTAG___AGAAAGACACTGTTGCTCAGTCTCTGCTTTTTCCAGAAGAAGAGCATCCAGACGTTCAGTTAATGCCTATTTTAGAACAAGA MASSEVARHL|vrlhhqatlrfmspfwmlkiftqveqnt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26948 STX12::FCHSD2 ENSG00000117758.14::ENSG00000137478.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STX12 ENSG00000117758.14 protein_coding + + chr1:27773219-27824443:+ chr1:27819732:+ chr1:28099730-28150954:+ chr1:28146243:+ FCHSD2 ENSG00000137478.15 protein_coding - + chr11:72836745-73142318:- chr11:72865152:+ chr11:72547790-72853363:- chr11:72576197:+ chr1:27822122,chr1:27822121 chr11:72863919,chr11:72863915 NA NA chr1:28148633,chr1:28148632 chr11:72574964,chr11:72574960 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none SNARE_domain(58%),Syntaxin-like_protein(100%)| SNARE(41%),Syntaxin(100%),Syntaxin_2(100%)| 14 11 9 211 25 ENST00000373943.9 unknown downstream upstream duplicates(1),mismatches(3) GGATTTGGAACTTATTAAAGAAAGAGAAACGGCAATTCGGCAGCTGGAG___GCTGACATTTTGGATGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAGGGTGATCTGATTG___ATAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCACGTCGAAAGAGCCACTGAACAGTTACAGCGAGCTGCTTACTATCAG|ATGACGAATGCTTTTGTTGGCAGCTGTAATGGAAGAAATAATTTAGCCTCTAGAATGTGCATTTCTGCTTCATGTTCCTCAGCCAGCTAGCTGTCAGTATGAAGAGATACAACCCCCTCTAAATAATTTCAGTGCTGTTACTTAAAAGCAGA DLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQ|mtnafvgscngrnnlasrmcisascssas* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26951 LIN54::SCD5 ENSG00000189308.11::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2489 TRUE 4538 TRUE 1724 LIN54 ENSG00000189308.11 protein_coding - - chr4:82909973-83012926:- chr4:82970327:- chr4:83831126-83934079:- chr4:83891480:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82680912:- chr4:83550692-83719949:- chr4:83602065:- chr4:82966007,chr4:82966014 chr4:82681596,chr4:82681600 NA NA chr4:83887160,chr4:83887167 chr4:83602749,chr4:83602753 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Fatty_acid_desaturase(77%) |FA_desaturase(29%) 11 12 6 114 162 ENST00000340417.8 ENST00000319540.9 upstream downstream mismappers(2),mismatches(3) CCCGGAACTCCATCAAAGACCATAACAATATCTGAAAGTGGTGTTATTGGATCAACTTTAAATTCTACAACACAGACACCAAATAAAATAGCCATCTCACCTTTGAAATCGCCAAATAAG|AATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGAAA___GTACTATAAGATCTCCGTGGTGCTCATGTGC PGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNK|NDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLM NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 83012792|83010484 FALSE|FALSE 82705413|82705413 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26952 LIN54::SCD5 ENSG00000189308.11::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4538 TRUE 1724 LIN54 ENSG00000189308.11 protein_coding - - chr4:82909973-83012926:- chr4:82978883:- chr4:83831126-83934079:- chr4:83900036:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82680912:- chr4:83550692-83719949:- chr4:83602065:- chr4:82966007,chr4:82966014 chr4:82681596,chr4:82681600 NA NA chr4:83887160,chr4:83887167 chr4:83602749,chr4:83602753 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Fatty_acid_desaturase(77%) |FA_desaturase(29%) 3 0 3 90 162 ENST00000340417.8 ENST00000319540.9 upstream downstream inconsistently_clipped(2) AGCTGAG___...ATTGACCCCAGGAAGTCAACTGATTAATACTACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGTACAG___ATTGCTAAGAAGCCTCGAACGCCAACCTCTGGTCCAGTAATCACGAAGCTGATCTTTGCAAAACCAATTAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTTTCACCACCAGTcATTGCAG|AATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGcCGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGA LTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIA|e* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 83012792|83010484 FALSE|FALSE 82705413|82705413 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26953 LIN54::SCD5 ENSG00000189308.11::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4538 TRUE 1724 LIN54 ENSG00000189308.11 protein_coding - - chr4:82909973-83012926:- chr4:82984824:- chr4:83831126-83934079:- chr4:83905977:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82680912:- chr4:83550692-83719949:- chr4:83602065:- chr4:82966007,chr4:82966014 chr4:82681596,chr4:82681600 NA NA chr4:83887160,chr4:83887167 chr4:83602749,chr4:83602753 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Fatty_acid_desaturase(77%) |FA_desaturase(29%) 0 0 0 85 162 ENST00000510557.5 ENST00000319540.9 upstream downstream mismatches(1) GATCATGGAGGTGGTGCCAGCTGAG|AATGACATCTTCGAGTGGTCCAGGGACCACaGAGCCCACCACAAGaACTaAGAGAaGGATGaTGACC...TACTTCTTttCCTCTATTCTCCGCTtTtCCATCTCACTCAACATCAGCTGGCTGGTCAACAGCGCCGCCCACATGTATtGAAACCGGCCCTATGAC?AGC MEVVPAE|NDIFEWSRDHRAHHKn* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 83012792|83010484 FALSE|FALSE 82705413|82705413 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26954 KMT2E::SRPK2 ENSG00000005483.23::ENSG00000135250.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105041023:+ chr7:104581390-104755466:+ chr7:104681470:+ SRPK2 ENSG00000135250.17 protein_coding - + chr7:105110704-105399308:- chr7:105313170:+ chr7:104751151-105039755:- chr7:104953617:+ chr7:105048631,chr7:105048628 chr7:105290616,chr7:105290609 NA NA chr7:104689078,chr7:104689075 chr7:104931063,chr7:104931056 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 0 12 10 247 45 ENST00000478079.2 unknown downstream upstream duplicates(1),low_entropy(1),mismappers(10),mismatches(4) ACGGGGTTCGGGTGTCTCGTGTGTGAACATCACAG___GGTTTGTGGATGCACTTAGATGTTTGCAATGAGCACTGTGGCTGGCATGCCCCAGTGTTTTGGATACCAATGCATAGGACTCCATAGTAATCGAATTTACCAGAGGCGAACGTCATGAGCATAGTGATCCCATTGGGGGTTGATACAGCAGAGACGTCATACTTGGAAATGGCTGCAGGTTCAGA|GTGCAGTGGCTCAAGCCTGTAATCCCAGCACTTTGGAAGGCCAACATGGGCGGATTGCCTGAGCTCAGGAATTTGAGGCCAGCCAGCGTAACATGGTAAAACCCCATCTCTACCAAAATACAAAAAAATTAGCAGGGTGTGGTGATGCGCACCTGTAATCCCAGCTACTCGGGCAGCTGAGGCAGGAGAATCGC MSIVIPLGVDTAETSYLEMAAGSe|csgssl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26955 SEC31A::SCD5 ENSG00000138674.17::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2490 FALSE NA FALSE NA SEC31A ENSG00000138674.17 protein_coding - - chr4:82818509-82901166:- chr4:82870325:- chr4:83739662-83822319:- chr4:83791478:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82705413:- chr4:83550692-83719949:- chr4:83626566:- chr4:82867907 chr4:82722804 NA NA chr4:83789060 chr4:83643957 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through high none |Fatty_acid_desaturase(98%) |FA_desaturase(44%) 7 3 6 147 178 ENST00000355196.6 ENST00000319540.9 upstream downstream mismatches(2) ACCAGTGATCCAGATGTGGGATCTTCGATTTGCTTCCTCTCCACTTCGTGTCCTGGAAAACCATGCCAG___GGGGATTTTGGCAATTGCTTGGAGCATGGCAGATCCTGAATTGTTACTGAGCTGTGGAAAAGATGCTAAGATTCTCTGCTCCAATCCAAACACAGGAGAG|CCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAG___AATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCG PVIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGE|ptsasswplwv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26960 DPP8::EXT2 ENSG00000074603.19::ENSG00000151348.16 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA DPP8 ENSG00000074603.19 protein_coding - - chr15:65442463-65517704:- chr15:65485099:- chr15:65734801-65810042:- chr15:65777437:- EXT2 ENSG00000151348.16 protein_coding + + chr11:44095648-44251962:+ chr11:44232353:+ chr11:44117198-44273512:+ chr11:44253903:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Dipeptidyl_peptidase_IV_(DPP_IV)_N-terminal_region(42%)|Glycosyl_transferase_family_64_domain(59%) DPPIV_N(45%),Dpp_8_9_N(100%)|Glyco_transf_64(25%) 5 2 2 122 117 ENST00000300141.11 ENST00000533608.7 upstream upstream duplicates(1),mismatches(1) ATCAGCTGGAGTCGCTACCTTTGTTCTCCAAGAAGAATTTGATAGATATTCTGGCTATTGGTGGTGTCCAAAAGCTGAAACAA___CTCCCAGTGGTGGTAAAATTCTTAGAATTCTATATGAAGAAAATGATGAATCTGAGGTGGAAATTATTCATGTTACATCCCCTATGTTGGAAACAAGGAGGGCAGATTCATTCCGTTATCCTAAAACAG___GTACAGCAAATCCTAAAGTCACTTTTAAGATGTCAGAAATAATGATTGATGCTGAAGGAAGG|GTCTGGCGGGAATTTCCTGACCGGTTGGTGGGTTACCCGGGTCGTCTGCATCTCTGGGACCATGAGATGAATAAGTGGAAGTATGAGTCTGAGTGGACGAATGAAGTGTCCATGGTGCTCACTGGGGCAGCTTTTTA...AAG___TATTTTAATTACCTGTATACCTACAAAATGCCTGGGGATATCAAGAACTGGGTAGATGCTCATATGAACTGTGAAGATATTGC SAGVATFVLQEEFDRYSGYWWCPKAETTPSGGKILRILYEENDESEVEIIHVTSPMLETRRADSFRYPKTGTANPKVTFKMSEIMIDAEGR|VWREFPDRLVGYPGRLHLWDHEMNKWKYESEWTNEVSMVLTGAAF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE multiple exostoses type 2 gene 1 exostoses, osteosarcoma multiple exostoses type 2 mesenchymal TSG missense, nonsense, frameshift, splice_site 26961 CEP350::LINC01035 ENSG00000135837.17::ENSG00000226486.2 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CEP350 ENSG00000135837.17 protein_coding + + chr1:179954674-180114880:+ chr1:180012075:+ chr1:179923809-180084015:+ chr1:179981210:+ LINC01035 ENSG00000226486.2 lncRNA + - chr1:188905688-189037564:+ chr1:188942339:- chr1:188874819-189006695:+ chr1:188911470:- chr1:180013181,chr1:180013179 chr1:188946852,chr1:188946854 NA NA chr1:179982316,chr1:179982314 chr1:188915983,chr1:188915985 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 1 2 4 189 4 ENST00000490047.2 unknown downstream downstream none AAGCTGGGTCATATTGACCATCCAGTAATGGTTGTTAATGTTGATAACTCAGTAACAGCAAAAGTCAGAAAAGTGGCAACAGCACCACCTGCTCCAGCATA...ACAGAATGCAGAACAG___GTAGTAGTCATCTTATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCTCCCAGAATGGAGCCAAAAGAGCAAAGAACAGCATCAAGTGACAGAGGTGGAAGAGAAAGAACTGCTAAATCTG|GTCTAATAATATTGCAAAGGCAAGGTCTTATCTAACTGGATTAACTTCTAGAAAATCAGGGAAAAGCTTTTGTCATCAACCAGGAGCTCTGTCCTCTGCTCTCAGGAATGTAATTAACAACTCAGGTCACTCCCTCATCTTTGCAGTTCCCCCACAGAGGTTCAACTATTGGCTGCAGCCCCTCCCCTGGTCTATC TECRTGSSHLISTSSWRDGQKLVKKILGPAPRMEPKEQRTASSDRGGRERTAKS|gliilqrqgli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26962 AUTS2::NOL4 ENSG00000158321.19::ENSG00000101746.16 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4540 TRUE 1725 AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:70134571:+ chr7:69063282-70258492:+ chr7:69599557:+ NOL4 ENSG00000101746.16 protein_coding - - chr18:33851100-34224952:- chr18:33883424:- chr18:31431064-31804916:- chr18:31463388:- chr7:70285882 chr18:33890452 NA NA chr7:69750868 chr18:31470416 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none none none 3 1 3 16 4 ENST00000342771.10 ENST00000261592.10 downstream downstream none ATGCCGAAGGCACTCAGACAG___CTCAAGCCAGGACAGAACAGCTGCAGGGACAGTGACAGTGAAAGTGCCAGTGGAGAATCCAAGGGCTTCCACCGGAGCAGCTCTCGGGAAAGGCTCAGTGAT___AGTTCAGCTCCTTCCAGCTTGGGAACAGGCTACTTC|GATGAGTCTGCTCCAGCTGACAAACAGTGTAAACCAGAGGCGACCCAGGCCACTTACTCAACATCAGCTGTTCCAGGCTCACAGGACGTGCTGTACATCAATGGAAATGGGACCTATA...AGGAGGGGGTCTGCTAAATCTGAATGATGCTTCCAGCAGTG___GACCCACTGATCTCAGCATGAAGAGACAATTGGCGACTAGCTCAGGATCCTCCAGCAGCTCAAACTCCAGACCCCAGCTGAGTCCAAC MPKALRQLKPGQNSCRDSDSESASGESKGFHRSSSRERLSDSSAPSSLGTGYF|DESAPADKQCKPEATQATYSTSAVPGSQDVLYINGNGTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26963 AUTS2::NOL4 ENSG00000158321.19::ENSG00000101746.16 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4540 TRUE 1725 AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69899498:+ chr7:69063282-70258492:+ chr7:69364484:+ NOL4 ENSG00000101746.16 protein_coding - - chr18:33851100-34224952:- chr18:33883424:- chr18:31431064-31804916:- chr18:31463388:- chr7:70285882 chr18:33890452 NA NA chr7:69750868 chr18:31470416 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation medium none none none 0 1 1 25 4 ENST00000342771.10 ENST00000261592.10 downstream downstream none TTACCAATGGCTTGTCCTTTCATTCAAAGAAGAGgAGACTCAGCCACCCACACCACTACAGCTCAGATCGAGAAAATGACCGCAATCTCTGCCAGCACCTTGGGAAGAGAAAGAAAATGCCGAAGGCACTCAGACAG|GATGAGTCTGCTCCAGCTGACAAACAGTGTAAACCAGAGGCGACCCAGGCCACTTACTCAACATCAGCTGTTCCAGGCTCACAGGACGTGCTGTACATCAATGGAAATGGGACCTATA TNGLSFHSKKrRLSHPHHYSSDRENDRNLCQHLGKRKKMPKALRQ|DESAPADKQCKPEATQATYSTSAVPGSQDVLYINGNGTY NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26964 LTBP4::SCGB1B2P ENSG00000090006.18::ENSG00000268751.2 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LTBP4 ENSG00000090006.18 protein_coding + - chr19:40592883-40629818:+ chr19:40609806:- chr19:41098789-41135723:+ chr19:41115712:- SCGB1B2P ENSG00000268751.2 lncRNA - - chr19:34576728-34577797:- chr19:34577456:- chr19:35067633-35068702:- chr19:35068361:- chr19:40607887,chr19:40607891 chr19:34577639,chr19:34577640 NA NA chr19:41113793,chr19:41113797 chr19:35068544,chr19:35068545 NA NA antisense sense unknown CDS exon/splice-site deletion/3'-3' high none none none 2 3 1 28 19 unknown ENST00000690771.1 upstream downstream mismatches(1) GCAGAGCAGTCCTGGGGCGGGACCCGAGAGGGGAAGCGgGGGAGGGCTGGAGAGGCTCTGGAGTGAGAGCAGGAGCGAGACCCTGGGGTGGGCCTGGAGCCGGGTGGGGCAAATTTCTCACCCAGGCATTCCGCAGCCCGTGGGCCGGCTCGGAAGCCCGGGCCGCACACGCAGCGGAAGCTGCCTG|AGCCCAGGAAACTCTGCCCGCAGCTTATGACGGTCATTAACCAGTTTCTGACCAAGGACAAGGACACCTACATGGACACTGTCAACAGATACCACCTCACGGAGCCGGAAAGAAACACATCCTCTAAACTCAAGGACTGCGTGACCGACACAATGACCCCCGAGGAGACAGAGGCCGTCGTGCAGCAACTG___GCACCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26965 ZCCHC7::FA2H ENSG00000147905.18::ENSG00000103089.9 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37126942:+ chr9:37120571-37358146:+ chr9:37126939:+ FA2H ENSG00000103089.9 protein_coding - + chr16:74712955-74774831:- chr16:74768236:+ chr16:74746853-74808729:- chr16:74802134:+ chr9:37137999,chr9:37137996 chr16:74761768,chr16:74761762 NA NA chr9:37137996,chr9:37137993 chr16:74795666,chr16:74795660 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 0 4 1 122 9 ENST00000336755.10 unknown downstream upstream none GTGTAATCCGAGAGGTCATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCACCATTTCAGAAGGTGATAATGTGGAAAGCTGGATGCTACTGGGA...GATAAAGATGATGATATCCTTCTCAACCTTGTGGGATGTGAAAACTCTGTTACTGAAG|AGAATCCTAATTTTTGACCCTCTTCCCAATTCTGGGTCTCAAAGCCTCTTTATTCACTGAATTGTGGGGTGACACCAGAGAGCACTCCTGGAGCTTGTGCTGACCCTGGGGTGGCCATGGAACTGCAGTGACCTGGGCCCTGGATGCCCCACCAGCTGGCCCTAGCTTCGTCCTCCAG___AAACCTCTGTGGCTGGTGACGCTTTTGCCCGAGTTTTTGTCCTGCATCCAGGAAGAATGAGGTATGCAGAGAAGTGAAT DKDDDILLNLVGCENSVTE|enpnf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26969 FMN1::HERC2P9 ENSG00000248905.10::ENSG00000291082.1 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FMN1 ENSG00000248905.10 protein_coding - - chr15:32765544-33194714:- chr15:32964107:- chr15:33057745-33486915:- chr15:33256308:- HERC2P9 ENSG00000291082.1 lncRNA + + chr15:28651421-28685264:+ chr15:28673888:+ chr15:28896567-28930410:+ chr15:28919034:+ chr15:32956632,chr15:32956644 chr15:28671857,chr15:28671846 NA NA chr15:33248833,chr15:33248845 chr15:28917003,chr15:28916992 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Formin_Homology_2_Domain(18%)| FH2(2%)| 0 1 2 31 288 ENST00000616417.5 ENST00000528584.5 upstream upstream duplicates(1),mismatches(1) CAGCCATCGAGCCCAGTTGTCCCATGAAGCCTTTATATTGGACTAGGATACAAATAAGTGATAGGAG___CCAAAATGCTACACCAACCTTATGGGACTCCTTAGAAGAACCTGACATTCGGGACCCCAGTGAATTTGAGTATTTATTCTCCAAAGACACAACTCAACAGAAGAAAAAACCTCTGTCAGAGACTTATGAGAAGAAAAACAAGGTCAAAAAG|GTGTGATGGATGTCAGATGTTTCCTATCAATGGATCCAGATTCAAATGCAGAAACTGTGATGACTTTGATTTTTGTGAAACGTGTTTCAAGACCAAAAAACACAATACCAGGCATACATTTGGCAGAATAAATGAACCAG___GCTTCAGCAcAAGAAACACTTCCTATAAATCTC AIEPSCPMKPLYWTRIQISDRSQNATPTLWDSLEEPDIRDPSEFEYLFSKDTTQQKKKPLSETYEKKNKVKK|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26971 PANTR1::LIMS1 ENSG00000233639.9::ENSG00000169756.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PANTR1 ENSG00000233639.9 lncRNA - - chr2:104764932-104853183:- chr2:104853110:- chr2:105381390-105469641:- chr2:105469568:- LIMS1 ENSG00000169756.17 protein_coding + - chr2:108533671-108687246:+ chr2:108595729:- chr2:109150127-109303702:+ chr2:109212185:- chr2:104812109,chr2:104832129,chr2:104832131,chr2:104832131 chr2:108635178,chr2:108607914,chr2:108607912,chr2:108607913 NA NA chr2:105428567,chr2:105448587,chr2:105448589,chr2:105448589 chr2:109251634,chr2:109224370,chr2:109224368,chr2:109224369 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 1 2 0 3 3 ENST00000447876.5 unknown upstream downstream none GTGAGTTTGGAGGGTGCCGGTCAGCGGAGCCGTGCGATGTATTTGAAAAGCAATCAGTCCGACCTTCCCCCATAGATTCATC|ATGAAGGAACAGAATGAAAGTCCCACAGTTGAGAGCCAAGAACAGGACCTGGGGGGTACACTGATTCCTAGTACACAGTTGACTACAGAACAACAACAACAACAACAAAATAAACCAAGTACAATGGGAAAAACTGAAGAAAATAGTTAAGTGGGACAAAGGCAACAAAGTAGGCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26972 LIMS1::PANTR1 ENSG00000169756.17::ENSG00000233639.9 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LIMS1 ENSG00000169756.17 protein_coding + - chr2:108533671-108687246:+ chr2:108634161:- chr2:109150127-109303702:+ chr2:109250617:- PANTR1 ENSG00000233639.9 lncRNA - - chr2:104764932-104853183:- chr2:104812483:- chr2:105381390-105469641:- chr2:105428941:- NA NA NA NA NA NA NA NA antisense sense unknown intron exon deletion/3'-3' medium none none none 17 1 3 113 94 unknown ENST00000693148.2 upstream downstream inconsistently_clipped(1),low_entropy(1),mismatches(2) ACATTAAATTGAACAGCTGGCATGCTGAATTAACATGAGAGTCACTGAAAACTGAGTGCTGCATGAGAGCTGGCAGCTGGCACACCAGAGAGCCCTGCAGTCCTTCTTCCCTCCCCCTACAGACATCCTGCTAGAAGGAGACCCCAACCTGACACAG|GACAAGACGGAGAATGTGAACAATGCTCCTGAAGGCCCCTTTCCCTCAAAGGTAACCACTGGCCTGACTTCTGACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26973 TMA7::CYB561D2 ENSG00000232112.3::ENSG00000114395.11 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMA7 ENSG00000232112.3 protein_coding + + chr3:48440257-48444208:+ chr3:48441881:+ chr3:48481667-48485616:+ chr3:48483292:+ CYB561D2 ENSG00000114395.11 protein_coding + - chr3:50350845-50358460:+ chr3:50354685:- chr3:50388276-50395891:+ chr3:50392116:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/3'-3' medium none Translation_machinery_associated_TMA7(82%)| TMA7(44%)| 17 13 24 62 34 unknown unknown downstream downstream mismatches(8) ATTTCAAAATATTTTTCAGGCCCAGCAGTTCTAGTACTTTATGTGCATCATAAGCATTATTTTACATTGATCCAACTAGTGATTATTTCCTCCACAGTTGTTTATGCCCCCATTTGAGCACTGTGAGCCATGCTAGGCATGATGGAGACAAGGATGGTGGGAGTGTCATCTAGGGCTTCCCAAGACCTCTCTCCCAGTGGGTTTGA|ca|GGACTTGATTGTCTCCATGGTAACTCCAGCTGGATAAGAAGCCCATTGCCCCAGCTCCCCACCACCGCCACCACCACCACCACATGCGCACTGCCAAGCAGCCTTCCAAGAGCTATTGCCTCAGACTCTTACTCCTTTTTTCTTTCCCTCCAAACCCCAATCTGGGAGGCCTTCTGTCCCTGCCTAGATCTGATGATAAGGGCCTCTCCATCATAAGGCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26974 TMA7::ENSG00000272104 ENSG00000232112.3::ENSG00000272104.1 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA TMA7 ENSG00000232112.3 protein_coding + + chr3:48440257-48444208:+ chr3:48441881:+ chr3:48481667-48485616:+ chr3:48483292:+ ENSG00000272104 ENSG00000272104.1 protein_coding + - chr3:50350892-50367923:+ chr3:50354685:- chr3:50388323-50405354:+ chr3:50392116:- NA NA NA NA NA NA NA NA sense antisense unknown intron intron inversion/3'-3' medium none Translation_machinery_associated_TMA7(82%)| TMA7(44%)| 17 13 22 62 34 unknown unknown downstream downstream mismatches(8) ATTTCAAAATATTTTTCAGGCCCAGCAGTTCTAGTACTTTATGTGCATCATAAGCATTATTTTACATTGATCCAACTAGTGATTATTTCCTCCACAGTTGTTTATGCCCCCATTTGAGCACTGTGAGCCATGCTAGGCATGATGGAGACAAGGATGGTGGGAGTGTCATCTAGGGCTTCCCAAGACCTCTCTCCCAGTGGGTTTGA|ca|GGACTTGATTGTCTCCATGGTAACTCCAGCTGGATAAGAAGCCCATTGCCCCAGCTCCCCACCACCGCCACCACCACCACCACATGCGCACTGCCAAGCAGCCTTCCAAGAGCTATTGCCTCAGACTCTTACTCCTTTTTTCTTTCCCTCCAAACCCCAATCTGGGAGGCCTTCTGTCCCTGCCTAGATCTGATGATAAGGGCCTCTCCATCATAAGGCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26975 CYB561D2::ENSG00000244380 ENSG00000114395.11::ENSG00000244380.1 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CYB561D2 ENSG00000114395.11 protein_coding + + chr3:50350845-50358460:+ chr3:50351560:+ chr3:50388276-50395891:+ chr3:50388991:+ ENSG00000244380 ENSG00000244380.1 lncRNA - - chr3:48440352-48446656:- chr3:48440862:- chr3:48481762-48488060:- chr3:48482272:- chr3:50354682,chr3:50354683 chr3:48441877,chr3:48441882 NA NA chr3:50392113,chr3:50392114 chr3:48483288,chr3:48483293 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 1 0 1 243 93 ENST00000232508.9 ENST00000438872.1 downstream downstream none CCGAGgTCTGCGTACTGCTTCTGGCGCTGCCGCCCACCTTGTGGCCCTGGGCTTTACCATCTTTGTGGCTGTGCTTGCCAGGCCTGGCTCCA|CTCTTCCTAAGGAATGGAAGCCCAGACTGCCTGGGAGGCAGGAGACCTCGTTTCCAGCTCCCGGtCCTTACTGCCGCTGCAAATCCTAGACTGGCTAGAGACCATTCGCTGCAtCGGACGTCGGAAAACGAGACCTCGCAGTTCAGGAG RgLRTASGAAAHLVALGFTIFVAVLARPGS|tlpkewkprlpgrqetsfpapgpycrcks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26989 WAC::MPP7 ENSG00000095787.26::ENSG00000150054.19 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA WAC ENSG00000095787.26 protein_coding + + chr10:28532493-28623112:+ chr10:28535757:+ chr10:28821422-28912041:+ chr10:28824686:+ MPP7 ENSG00000150054.19 protein_coding - + chr10:28050993-28334486:- chr10:28263599:+ chr10:28339922-28623415:- chr10:28552528:+ chr10:28543740,chr10:28543741 chr10:28247198,chr10:28247196 NA NA chr10:28832669,chr10:28832670 chr10:28536127,chr10:28536125 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' medium none none none 6 1 1 1363 11 ENST00000375664.8 unknown downstream upstream mismatches(1) GCAGCCTTACCAG___GCACTTAAGTATTCATCGAAGAGTCACCCCAGTAGCGGTGATCACAGACATGAAAAGATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAATACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTG|GATTTGGCTGTGAAGCGTGACCAACC?AGCCAGGAGGAAGGGGAGGGATCTTGGAGCTGGCCCACGATCTGCAAAGAGGAAA MRDAGDPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHTHRVRERDG|gfgcea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 26992 ARHGAP32::SGF29 ENSG00000134909.19::ENSG00000176476.9 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4544 FALSE NA ARHGAP32 ENSG00000134909.19 protein_coding - - chr11:128965060-129279324:- chr11:129279146:- chr11:128834955-129149219:- chr11:129149041:- SGF29 ENSG00000176476.9 protein_coding + + chr16:28553915-28591790:+ chr16:28581055:+ chr16:28565236-28603111:+ chr16:28592376:+ chr11:129203641,chr11:129203649 chr16:28567815,chr16:28567807 NA NA chr11:129073536,chr11:129073544 chr16:28579136,chr16:28579128 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation medium none |SGF29_tudor-like_domain(100%) |DUF1325(100%) 0 3 0 13 173 ENST00000525234.1 ENST00000317058.8 upstream upstream none GCGGCCAGCGGGGCGCAGGGACGCCGCGGCGGCGCGGCGGGGCCGCGGGGCTCG|GTGCCCCTGTAGACAATGGCCCTCGTGTCTGCCG?TTCCCGCATTGCAGAACTTCTCACAGAGCTCCATCAGCTGATCAAACAAACCCAG___GAAGAGCGTTCGCGGAGCGAACACAACTTAGTGAACATCCAGAAGACCCATGAGCGGATG...CAACCGCCAAGGCCGATGCAGAGGCTGAGTGCAA___CATCCTTCGGAAAGCTCTGGACAAGATCGCGGAAATCAAGTCTCTGTTGGAAGAGAGGCGGATTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27002 CXADR::HDAC9 ENSG00000154639.19::ENSG00000048052.25 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CXADR ENSG00000154639.19 protein_coding + + chr21:17513043-17593579:+ chr21:17565611:+ chr21:18885361-18965897:+ chr21:18937929:+ HDAC9 ENSG00000048052.25 protein_coding + - chr7:18086949-19002416:+ chr7:18511588:- chr7:18126572-19042039:+ chr7:18551211:- chr21:17584591,chr21:17584591 chr7:18531110,chr7:18531142 NA NA chr21:18956909,chr21:18956909 chr7:18570733,chr7:18570765 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Immunoglobulin_V-set_domain(100%),Immunoglobulin_domain(100%)| I-set(100%),V-set(100%),ig(100%)| 1 1 2 1018 12 ENST00000400169.1 unknown downstream downstream mismatches(1) GACTAATTGCAGGAGCCATTATAGGAACTTTGCTTGCTCTAGCGCTCATTGGTCTTATCATCTTTTGCTGTCGTAAAAAGCGCAGAGAAGAAAAATATGAA...GGGAAGATGTGCCACCTCCAAAGAGCCGTACGTCCACTGCCAGAAGCTACATCGGCAGTAATCATTCATCCCTGGGGTCCATGTCTCCTTCCAACATG?AAGGATATTCCAAGACcCAGTATAACCAAGTACCAAGgGAA...TTTGAACGCACTCCTCAGAGTCCGACTCTCCCACCTGCTAAG|AGTCTCACTCTGCTGCCCAGGCTGGAGTGCAATGGAGTGATGTCGGCTCACTGAAGCCTTGACTTCCTGGCTCAAGCAATCCTCCCACCGCAGCCTCCCAAAGTGCTG FERTPQSPTLPPAK|sltllprlecngvmsah* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27009 CCT6P3::ENSG00000266268 ENSG00000290860.1::ENSG00000266268.5 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CCT6P3 ENSG00000290860.1 lncRNA + + chr7:65038354-65074713:+ chr7:65038565:+ chr7:64498732-64535091:+ chr7:64498943:+ ENSG00000266268 ENSG00000266268.5 lncRNA - - chr18:4775054-5004537:- chr18:4807995:- chr18:4775053-5004536:- chr18:4807994:- chr7:65044190 chr18:4871768 NA NA chr7:64504568 chr18:4871767 NA NA sense sense unknown exon/splice-site exon/splice-site translocation medium none none none 0 3 0 40 2 ENST00000419314.5 ENST00000584204.1 downstream downstream none CCGAGCACCGGGCCCTCTGCGACCTGGGGCCCTGGGTGAAGTGCTCCGTCGCCCTTGCCTCCAG|AGCAATCAGGGATCATTCTTCAGCGTCCTGAAGAGTGTTTTCTTTGTCGCTGCTTCGCAGGCAACACAAGTGCCACGCAGCTGTGCTCGTACTAGGCCTCTGCGCGGAGCCACCTGACTTCCTGCTGGGCACTGA...CGCACACCGCTACTCCACAATCCAGAGAATTTGCTTCAATTGGTGGAATTTGCTGgAATATGTCCCTTGAGTGTaCTTGTCCGAAATGATTTTTCTCTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27011 MEMO1::CHST8 ENSG00000162959.14::ENSG00000124302.13 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEMO1 ENSG00000162959.14 protein_coding - - chr2:31865060-32011230:- chr2:32010187:- chr2:32090129-32236299:- chr2:32235256:- CHST8 ENSG00000124302.13 protein_coding + - chr19:33621953-33773509:+ chr19:33639080:- chr19:34112859-34264414:+ chr19:34129986:- chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982665,chr2:31982613 chr19:33647748,chr19:33647762,chr19:33647772,chr19:33647770,chr19:33647771,chr19:33647795,chr19:33647793,chr19:33647746,chr19:33647860 NA NA chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207734,chr2:32207682 chr19:34138654,chr19:34138668,chr19:34138678,chr19:34138676,chr19:34138677,chr19:34138701,chr19:34138699,chr19:34138652,chr19:34138766 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Memo-like_protein(4%)| Memo(0%)| 0 2 1 784 47 ENST00000295065.9 unknown upstream downstream mismatches(3) CCGCCTCCTCATTCATCCTCGTGCACCATAGGCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCTGCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCCTCAG|GATCACCTGCTGTGTGCTAGGACTGGAGAGAGGCTCCTGTCACCTGCAAGCCACCTTTAAGCACAATATTTGACTGTTTCCTGGCTGACAGCAATTTTAGAAGAAAGGTCAGCAGCAACAAGAAATCTTCTGATCCCCAGCCATGCATTCTCTGGGTGCCCCCCATCCACATCCTCTCCC MSNRVVCREASHAGSWYTAS|gspavc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27015 CHST8::ZNF573 ENSG00000124302.13::ENSG00000189144.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4550 TRUE 1726 CHST8 ENSG00000124302.13 protein_coding + + chr19:33621953-33773509:+ chr19:33622296:+ chr19:34112859-34264414:+ chr19:34113202:+ ZNF573 ENSG00000189144.15 protein_coding - - chr19:37735833-37817300:- chr19:37740194:- chr19:38226734-38307940:- chr19:38231095:- chr19:33659513,chr19:33659512,chr19:33659512,chr19:33659267,chr19:33659202,chr19:33659202,chr19:33659210 chr19:37788164,chr19:37788165,chr19:37788308,chr19:37788349,chr19:37788548,chr19:37788529,chr19:37788671 NA NA chr19:34150419,chr19:34150418,chr19:34150418,chr19:34150173,chr19:34150108,chr19:34150108,chr19:34150116 chr19:38278804,chr19:38278805,chr19:38278948,chr19:38278989,chr19:38279188,chr19:38279169,chr19:38279311 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%) |zf-C2H2(100%),zf-C2H2_6(100%) 1 1 0 17 119 ENST00000650847.1 ENST00000392138.5 downstream downstream duplicates(1) GCTCCCCGCACGCTCCGGCTGCCGGCCCCACGCTGCTCGCCCACAGATCGCACTGGGTTCCGCTTGGAGCGGGCGGAGGCACCGGGCCCGAGCTGGGTCGG...CCGCTCCCGGACTGGAGGCGCCCGCGGCCTCGGGTGCGTCCGCTGCGCCAG|ATTTGGATTTACAGTGTGAGATAATCAGCTACATAGAAGTACCCACTTATGAAACAGATATATCCTCTACACAACTTCAGAGCATATATAAGAGAGAGAAACTCTATGAATGTAAGAAATGTCAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27016 CHST8::ZNF573 ENSG00000124302.13::ENSG00000189144.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4550 TRUE 1726 CHST8 ENSG00000124302.13 protein_coding + + chr19:33621953-33773509:+ chr19:33622296:+ chr19:34112859-34264414:+ chr19:34113202:+ ZNF573 ENSG00000189144.15 protein_coding - - chr19:37735833-37817300:- chr19:37771696:- chr19:38226734-38307940:- chr19:38262336:- chr19:33659513,chr19:33659512,chr19:33659512,chr19:33659267,chr19:33659202,chr19:33659202,chr19:33659210 chr19:37788164,chr19:37788165,chr19:37788308,chr19:37788349,chr19:37788548,chr19:37788529,chr19:37788671 NA NA chr19:34150419,chr19:34150418,chr19:34150418,chr19:34150173,chr19:34150108,chr19:34150108,chr19:34150116 chr19:38278804,chr19:38278805,chr19:38278948,chr19:38278989,chr19:38279188,chr19:38279169,chr19:38279311 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 1 1 0 17 101 ENST00000650847.1 ENST00000536220.7 downstream downstream none CGCGCCGGGGGCCGAAGAGGAACGCCGCCCCGCGCCCTCTCGCTCCCCGCACGCTCCGGCTGCCGGCCCCACGCTGCTCGCCCACAGATCGCACTGGGTTC...AGGATCCGCCGCGGAGAACCGCTCCCGGACTGGAGGCGCCCGCGGCCTCGGGTGCGTCCGCTGCGCCAG|TTTCAGGAATTAGTGACATTCAGGGATGTGGCCATAGACTTCTCTCGGCAGGAGTGGGAATACCTGGACCCTAATCAGAGGGACTTATACAGGGATGTGATGTTGGAGAACTATAGAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27017 CHST8::ZNF573 ENSG00000124302.13::ENSG00000189144.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4550 TRUE 1726 CHST8 ENSG00000124302.13 protein_coding + + chr19:33621953-33773509:+ chr19:33622296:+ chr19:34112859-34264414:+ chr19:34113202:+ ZNF573 ENSG00000189144.15 protein_coding - - chr19:37735833-37817300:- chr19:37771690:- chr19:38226734-38307940:- chr19:38262330:- chr19:33659513,chr19:33659512,chr19:33659512,chr19:33659267,chr19:33659202,chr19:33659202,chr19:33659210 chr19:37788164,chr19:37788165,chr19:37788308,chr19:37788349,chr19:37788548,chr19:37788529,chr19:37788671 NA NA chr19:34150419,chr19:34150418,chr19:34150418,chr19:34150173,chr19:34150108,chr19:34150108,chr19:34150116 chr19:38278804,chr19:38278805,chr19:38278948,chr19:38278989,chr19:38279188,chr19:38279169,chr19:38279311 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%) |KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%) 1 0 0 17 101 ENST00000650847.1 ENST00000378445.8 downstream downstream none GGCGCGCAAGCCGGATCCGGCAGTGCTGCGGGGAGGAGAGAGGACGAGGCGGCcGCGGCAGCAGGAGGTGGGGGACCGATCGgGCCGGGGGgCGAAGcGG...CGCCCCAAGCAGAGGATCCGCCGCGGAGAACCaCcCCCGGACTGGAGGCGCCCGCGGCCTCGGGTGCGTCCGCTGCGCCAG|GAATTAGTGACATTCAGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27026 EXD3::NPDC1 ENSG00000187609.16::ENSG00000107281.10 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4553 FALSE NA EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137323725:- chr9:140201348-140317663:- chr9:140218177:- NPDC1 ENSG00000107281.10 protein_coding - - chr9:137039463-137046179:- chr9:137043073:- chr9:139933915-139940631:- chr9:139937525:- chr9:137315645 chr9:137044568 NA NA chr9:140210097 chr9:139939020 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none 3'-5'_exonuclease(100%),Mut7-C_RNAse_domain(95%)|Neural_proliferation_differentiation_control-1_protein_(NPDC1)(87%) DNA_pol_A_exo1(100%),Mut7-C(63%)|NPDC1(53%) 4 1 1 116 646 ENST00000340951.9 ENST00000371601.5 upstream downstream inconsistently_clipped(1),low_entropy(1) CGCATGCTGGGCAATGGTGAAGACCACCGCgGGGCGGCCGAG___GTTGCCAGGCAGGAGGGGAGGATCATTCTGACGTCGGGGCAGCCATTCCACAAG___CTCCGGGCCCAGGTCGGGGCTGGGCGCTGCCTCTCGGTCGACTGCTCCCTGAAGGCCCAGCAGCAGGCCAAGGCTGTGCTCAAGCATTTCAACGTGCGTGTCACCCACGCAGACATCTTCAGCCGCTGCCAG|ATGTAGCCGCCTGTCCCGGGAGCCTGGACTGTGCCCTGAAGAGGCGGGCAAGGTGTCCTCCTGGTGCACATGCCTGTGGGCCCTGCCTTCAGCCCTTCCAGG RMLGNGEDHRgAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQ|m* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27027 NCBP3::ITGAE ENSG00000074356.17::ENSG00000083457.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NCBP3 ENSG00000074356.17 protein_coding - - chr17:3802158-3846246:- chr17:3812494:- chr17:3705452-3749540:- chr17:3715788:- ITGAE ENSG00000083457.12 protein_coding - - chr17:3714628-3801188:- chr17:3763960:- chr17:3617922-3704482:- chr17:3667254:- chr17:3810484,chr17:3810486,chr17:3810486 chr17:3777138,chr17:3777137,chr17:3777135 NA NA chr17:3713778,chr17:3713780,chr17:3713780 chr17:3680432,chr17:3680431,chr17:3680429 NA NA sense sense unknown 3'UTR CDS/splice-site deletion/read-through low none Nuclear_cap-binding_protein_subunit_3_(100%)|FG-GAP_repeat(100%),Integrin_alpha(100%),Integrin_alpha_cytoplasmic_region(100%),von_Willebrand_factor_type_A_domain(100%) NCBP3(100%)|FG-GAP(100%),Haspin_kinase(100%),Integrin_alpha(100%),Integrin_alpha2(100%),VWA(100%),VWA_2(100%) 3 2 1 136 5 ENST00000576523.1 ENST00000263087.9 upstream downstream mismappers(1) TACGAAGAAAGTGGATCACAGGGCGCCTGGCGCTGAGGAAGACGACTCTGAGCTGCAAAGGGCATGGGGGGCTCTGATTAAGGAGAAAGAGCAGTCTCGC...GCCG___CTGTTACCAGCACCCTTTTCCCAAGAAAAGTCAATTCCCAGGTGCTTATTGGACATCCTTCGAGGGGGAAGAGGAGGGAAGCGGCCAGCTCACCCTTCCGGGACCCTAGTGTGGGGCGAATCTCACGGACCTGACCTCAGAGGTGCACCAGTGCCGCCCAG|GCTCCTGGTCACCAGCCCCAGAACCAAGAGGACACCAGGGCCCCTCCATCGATGTTCCCTTGTCCAGGATGAAATCCTTTGCCATCCTGTAG___AGCATGTCCCCATCCCCAAGGGGAGGCACCGGGGAGTGACCGTTGTCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27029 TENT4A::LINC02196 ENSG00000112941.14::ENSG00000250974.4 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4554 FALSE NA TENT4A ENSG00000112941.14 protein_coding + + chr5:6713432-6757044:+ chr5:6715119:+ chr5:6713545-6757157:+ chr5:6715232:+ LINC02196 ENSG00000250974.4 lncRNA + + chr5:6839460-7219291:+ chr5:6923739:+ chr5:6839573-7219404:+ chr5:6923852:+ chr5:6726446 chr5:6840372 NA NA chr5:6726559 chr5:6840485 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site deletion/read-through low none none none 0 1 2 44 9 ENST00000515721.1 ENST00000648809.1 downstream upstream none TAAGTGTGGAGTTTCACGTAAGTTAAGgTGCAGAATAATTTAGCATTGCCAGGAACTCGAATCACGTCGAAG|CTCCTGGGGACTGATGaACACAGCTGTGG...TGTTAGAGCTCTTGTGGCTGCCTGGAGATGATGCTGCCTTGGCCATGGCCTGCTGTTATCCTCGGGGAGCTGGGACGTGGGCACAGGGGCATGCATTTCCCCCTCAGCACTAGCTCCAAGGGACAATGTGCAGCACTTGCTG___AGGGCAGAAGAAAATGGAAAACAAAGACAAACAAACCAAAGAAGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27031 ENSG00000231863::SNRPE ENSG00000231863.2::ENSG00000182004.13 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000231863 ENSG00000231863.2 lncRNA + + chr6:160931080-160985624:+ chr6:160959064:+ chr6:161352112-161406656:+ chr6:161380096:+ SNRPE ENSG00000182004.13 protein_coding + + chr1:203861599-203871152:+ chr1:203869877:+ chr1:203830727-203840280:+ chr1:203839005:+ NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site translocation low none |LSM_domain_(21%) |LSM(0%) 1 2 0 21 6109 ENST00000417479.2 ENST00000414487.7 downstream upstream none TGCAG___AAGTAACCAAATTTACTCACGTAGGCCAGGAATTTCTATGACGTGTTCCAAATTCAGCCTCTCACTGAACACTTCCAGAGCAAGGCAACATAAACA|GTCGGATCATGCTAAAAGGAGATAATATTACTCTGCTACAAAGTGTCTCCAACTAGAAA...TTGTTGAGAAGGATACAGTTTGTTTTTAGATGTCCTTTGTCCAATGTGAACATTTATTCATATTGTTTTGATTACCCTCGTGTTACTACAAGATGGCAATAAATACTATGGGATTGTTTGTATTAAAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27042 EXD3::EHMT1 ENSG00000187609.16::ENSG00000181090.21 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137423114:- chr9:140201348-140317663:- chr9:140317566:- EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137716626:+ chr9:140513444-140764468:+ chr9:140611078:+ NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion low none |Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Pre-SET_motif(100%),SET_domain(100%) |Ank(100%),Ank_2(100%),Ank_3(100%),Ank_4(100%),Ank_5(100%),Pre-SET(100%),SET(100%) 0 2 0 254 460 ENST00000340951.9 ENST00000460843.6 upstream upstream none GACGGTGTGGGGCGGTCCCGGCCCCGCAG|AGACACCTATGGCTGCCGATGAAGGCTCAGCAGAGAAACAGGCAGGAGAGGCCCACATGGCTGCGGACGGTGAGACCAATGGGTCTTGTGAAAACAGCGATGCCAGCA...AGCACACTCAGGACAGCGCAAGGGTCAACCCCCAGGATGGCACCAACACACTAACTCGGATAGCGGAAAATGGGGTTTCAGAAAGAGACTCAGAAGCGGCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-602 chr9:137838419-137838516:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27051 ENSG00000272104::ENSG00000244380 ENSG00000272104.1::ENSG00000244380.1 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000272104 ENSG00000272104.1 protein_coding + + chr3:50350892-50367923:+ chr3:50351560:+ chr3:50388323-50405354:+ chr3:50388991:+ ENSG00000244380 ENSG00000244380.1 lncRNA - - chr3:48440352-48446656:- chr3:48440862:- chr3:48481762-48488060:- chr3:48482272:- chr3:50354682,chr3:50354683 chr3:48441877,chr3:48441882 NA NA chr3:50392113,chr3:50392114 chr3:48483288,chr3:48483293 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion low none none none 1 0 0 243 93 ENST00000606589.1 ENST00000438872.1 downstream downstream none CCGAGgTCTGCGTACTGCTTCTGGCGCTGCCGCCCACCTTGTGGCCCTGGGCTTTACCATCTTTGTGGCTGTGCTTGCCAGGCCTGGCTCCA|CTCTTCCTAAGGAATGGAAGCCCAGACTGCCTGGGAGGCAGGAGACCTCGTTTCCAGCTCCCGG RgLRTASGAAAHLVALGFTIFVAVLARPGS|tlpkewkprlpgrqetsfpap NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27057 DSG3::DSG4 ENSG00000134757.5::ENSG00000175065.12 LOVO SRR8616185 SRR8652098 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DSG3 ENSG00000134757.5 protein_coding + + chr18:31447741-31478702:+ chr18:31469349:+ chr18:29027704-29058665:+ chr18:29049312:+ DSG4 ENSG00000175065.12 protein_coding + + chr18:31376777-31414912:+ chr18:31388367:+ chr18:28956740-28994875:+ chr18:28968330:+ chr18:31472254,chr18:31472253 chr18:31388134,chr18:31388130 NA NA chr18:29052217,chr18:29052216 chr18:28968097,chr18:28968093 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Cadherin_domain(100%)|Cadherin__Y-type_LIR-motif(100%),Cadherin_domain(95%) Cadherin(100%)|Cadherin(89%) 2 8 6 53 21 ENST00000257189.5 ENST00000308128.9 downstream upstream duplicates(1),low_entropy(3) CCTGGAGTATACCACATCTCCCTGGTACTTACAGACAGTCAGAACAATCGGTGTGAGATGCCACGCAGCTTGACACTGGAAGTCTGTCAGTGTGACAACAGGGGCATCTGTGGAACTTCTTACCCAACCACAAGCCCTGGGACCAGGTATGGCAGGCCGCACTCAGGGAGGCTGGGGCCTGCCGCCATCGGCCTGCTGCTCCTTGGTCTCCTGCTGCTGCTGT|ATTCGATCAGACTGCGAATCGAACCAGAAGATAACATACCGGATTTCTGGAGTAGGGATTGATCGACCACCATATGGGGTATTCACCATTAATCCTCGCACTGGGGAAATTAACATCACTTCAGTGGTAGACAGAGAAATAACTCCACTTTTCTTG___ATCTATTGCCGGGCTCTGAATTCACGGGGTGAAGATTTAGAAAGGCCTCTTGAGCTTAGAGTCAAAGTTATGGACATAAATGATAACGCTCCAGTCTTTTCGCAAAGTGTATACACAGCCAGCATTGAAGAAAATAGTGATGCCA___ATACATTGGTAGTAAAGTTATGTGCCACAGATGCAGATGAAGAAAATCATCTGAATTCTAAAATTGCCTACAAGATCGTCTCTCAGGAGCCATCAGGTGCA PGVYHISLVLTDSQNNRCEMPRSLTLEVCQCDNRGICGTSYPTTSPGTRYGRPHSGRLGPAAIGLLLLGLLLLL|ysirlriepednipdfwsrd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27067 PIK3R3::P3R3URF-PIK3R3 ENSG00000117461.15::ENSG00000278139.1 LOVO SRR8616185 SRR8652098 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4559 TRUE 1727 PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46046551:- chr1:46505812-46598708:- chr1:46512223:- P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46077613:- chr1:46509333-46642160:- chr1:46543285:- chr1:46046436,chr1:46046440 chr1:46105047,chr1:46105048 NA NA chr1:46512108,chr1:46512112 chr1:46570719,chr1:46570720 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(50%)|Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(94%) PI3K_P85_iSH2(100%),SH2(87%)|PI3K_P85_iSH2(100%),SH2(80%) 1 2 0 40 58 ENST00000420542.5 ENST00000540385.2 upstream downstream none ATGATGAATTATGATAAATTGAAATCACGTCTGGGTGAGATTCATGATAGCAAAATGCGTCTAGAGCAGGATTTGAAGAATCAAGCTTTGGACAACCGAGA...TGT___ATGGCTCAATCACAAAGGAGTGAGACAGAAACGCCTGAATGTCTGGCTGGGAATTAAGAATGAGGATGCTGATGA|GGAGGAGGTAAATGACAAATTGCGGGATATGCCAGATGGGACCTTCTTGGTCCGAGATGCCTCAACAAAAAT...AATAATAAGTTAATAAAGATCTATCACCGGGATGGTAAATATGGCTTTTCTGATCCTCTGACATTTAATTCCGTGGTGGAGCTCATTAACCACTATCACCA VWLNHKGVRQKRLNVWLGIKNEDADe|EEVNDKLRDMPDGTFLVRDASTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 27068 PIK3R3::P3R3URF-PIK3R3 ENSG00000117461.15::ENSG00000278139.1 LOVO SRR8616185 SRR8652098 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4559 TRUE 1727 PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46046551:- chr1:46505812-46598708:- chr1:46512223:- P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46080750:- chr1:46509333-46642160:- chr1:46546422:- chr1:46046436,chr1:46046440 chr1:46105047,chr1:46105048 NA NA chr1:46512108,chr1:46512112 chr1:46570719,chr1:46570720 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(50%)|Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(100%) PI3K_P85_iSH2(100%),SH2(87%)|PI3K_P85_iSH2(100%),SH2(100%) 1 0 0 40 30 ENST00000420542.5 ENST00000540385.2 upstream downstream low_entropy(1) CATGATAGCAAAATGCGTCTAGAGCAGGATTTGAAGAATCAAGCTTTGGACAACCGAGAAATAGATAAAAA?ATGAATAGCATCAAACCTGACCTGATCCA...AGATCAACACCTTGT___ATGGCTCAATCACAAAGGAGTGAGACAGAAACGCCTGAATGTCTGGCTGGGAATTAAGAATGAGGATGCTGATGA|CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG___GGAGaAG DQHLVWLNHKGVRQKRLNVWLGIKNEDADd|sstkat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 27069 P3R3URF-PIK3R3::PIK3R3 ENSG00000278139.1::ENSG00000117461.15 LOVO SRR8616185 SRR8652098 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4560 TRUE 1728 P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46046551:- chr1:46509333-46642160:- chr1:46512223:- PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46077613:- chr1:46505812-46598708:- chr1:46543285:- chr1:46046436,chr1:46046440 chr1:46105047,chr1:46105048 NA NA chr1:46512108,chr1:46512112 chr1:46570719,chr1:46570720 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(50%)|Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(94%) PI3K_P85_iSH2(100%),SH2(85%)|PI3K_P85_iSH2(100%),SH2(80%) 1 2 0 40 58 ENST00000540385.2 ENST00000420542.5 upstream downstream none ATGATGAATTATGATAAATTGAAATCACGTCTGGGTGAGATTCATGATAGCAAAATGCGTCTAGAGCAGGATTTGAAGAATCAAGCTTTGGACAACCGAGA...TGT___ATGGCTCAATCACAAAGGAGTGAGACAGAAACGCCTGAATGTCTGGCTGGGAATTAAGAATGAGGATGCTGATGA|GGAGGAGGTAAATGACAAATTGCGGGATATGCCAGATGGGACCTTCTTGGTCCGAGATGCCTCAACAAAAAT...AATAATAAGTTAATAAAGATCTATCACCGGGATGGTAAATATGGCTTTTCTGATCCTCTGACATTTAATTCCGTGGTGGAGCTCATTAACCACTATCACCA VWLNHKGVRQKRLNVWLGIKNEDADe|EEVNDKLRDMPDGTFLVRDASTK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense 27070 P3R3URF-PIK3R3::PIK3R3 ENSG00000278139.1::ENSG00000117461.15 LOVO SRR8616185 SRR8652098 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4560 TRUE 1728 P3R3URF-PIK3R3 ENSG00000278139.1 protein_coding - - chr1:46043661-46176488:- chr1:46046551:- chr1:46509333-46642160:- chr1:46512223:- PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46080750:- chr1:46505812-46598708:- chr1:46546422:- chr1:46046436,chr1:46046440 chr1:46105047,chr1:46105048 NA NA chr1:46512108,chr1:46512112 chr1:46570719,chr1:46570720 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(50%)|Phosphatidylinositol_3-kinase_regulatory_subunit_P85_inter-SH2_domain(100%),SH2_domain(100%) PI3K_P85_iSH2(100%),SH2(85%)|PI3K_P85_iSH2(100%),SH2(100%) 1 0 0 40 30 ENST00000540385.2 ENST00000420542.5 upstream downstream low_entropy(1) CATGATAGCAAAATGCGTCTAGAGCAGGATTTGAAGAATCAAGCTTTGGACAACCGAGAAATAGATAAAAA?ATGAATAGCATCAAACCTGACCTGATCCA...AGATCAACACCTTGT___ATGGCTCAATCACAAAGGAGTGAGACAGAAACGCCTGAATGTCTGGCTGGGAATTAAGAATGAGGATGCTGATGA|CTCTTCCACCAAAGCCACCTAAGCCAATGACTTCAGCAGTTCCAAATGGAATGAAGGACAGTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAG___GGAGaAG DQHLVWLNHKGVRQKRLNVWLGIKNEDADd|sstkat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense 27088 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22029433:+ chr9:21994138-22128102:+ chr9:22029432:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 24 35 65 174 157 ENST00000644715.2 ENST00000645313.2 downstream upstream duplicates(10),inconsistently_clipped(1),mismappers(1),mismatches(11) GAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGG...___GCAATTTATAGCACTGATCTGTCATCAATACCACTTGCTGTCTTGGATGTGAA EVVLAKEAGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|dylprhfkgfqerilvsml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27089 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22012128:+ chr9:21994138-22128102:+ chr9:22012127:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 8 11 94 174 45 ENST00000644715.2 ENST00000651588.1 downstream upstream duplicates(3),inconsistently_clipped(1),mismatches(11) GCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACGTCCAGAAACAGCCCACCCCGCACCTGGTGCTGCACCTGCGAGGTGGCATTATTGAGCCTTCACTCTTCCAGCTCACCTAGAAATACAaCTGAAACAAGATGATCTGtCATAAGCGCTATGCTCTCCTGCACCCCTATGCTGTCAATTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGC AGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|rgsraadtemqifvktltgktitlevepsdtienvsakiqdkegippdkqrlifaskqledgrtlsdynvqkqptphlvlhlrggiiepslfqlt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27090 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22029433:+ chr9:21994138-22128102:+ chr9:22029432:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through high none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 5 14 31 268 157 ENST00000644715.2 ENST00000645313.2 downstream upstream duplicates(5),mismatches(9) GCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGGGAAATGTTCTCT...___GCAATTTATAG AEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|dylprhfkgfqerilvsml* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27091 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22023944:+ chr9:21994138-22128102:+ chr9:22023943:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 4 76 174 23 ENST00000644715.2 ENST00000651784.1 downstream upstream duplicates(2),mismatches(10) GCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|CCATCTCAGCCTCAGCCTGGTACTGAACGCTTGCCAGAGAGGTGATGTGGTCCTTTGGAGGAAAGAAG___GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTC AGICYASIAMATDYDCWKEHEEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|psqpqpgterlper* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27092 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22012128:+ chr9:21994138-22128102:+ chr9:22012127:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 0 2 40 268 45 ENST00000644715.2 ENST00000651588.1 downstream upstream duplicates(1),mismatches(8) TATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|CGAGGCAGCCGAGCTGCAGACACAGAGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAGTGCGAAAATTCAAGACAAGGAGGGTATCCCCCCTGACAAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCG IPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|rgsraadtemqifvktltgktitlevepsdtienvsakiqdkegippdkqrlifaskqledg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27093 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22023944:+ chr9:21994138-22128102:+ chr9:22023943:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 0 2 35 268 23 ENST00000644715.2 ENST00000651784.1 downstream upstream duplicates(2),mismatches(8) TATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAGGGACCTCGTTTTAGCTCCCGGGCAGAAAGCTTCATGTTCCGCACCTGGGGGGCGGATGTTATCAACATGACCACAGTTCCAGAGGTGGTTCTTGCTAAGGAGGCTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|CCATCTCAGCCTCAGCCTGGTACTGAACGCTTGCCAGAGAGGTGATGTGGT...GAAG___GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTA...ACCTATTGCTGTAAGTGCTGTTTGGGAAACCATCATCTTTCAGGTCTGTGTGATAAAAGAAGAGCCTTGGGGAAATGTTCTCTTCCAAATTTAATCTTTAC IPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEA|psqpqpgterlper* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27094 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21838010:+ chr9:21802635-21937650:+ chr9:21838009:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22023944:+ chr9:21994138-22128102:+ chr9:22023943:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(57%)| PNP_UDP_1(62%)| 1 0 6 344 23 ENST00000644715.2 ENST00000651784.1 downstream upstream mismatches(3) CTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG___GACCACTATGAGACCTCAGTCCTTCTATGATGGAAGTCATTCTTGTGCCAGAGGAGTGTGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG|CCATCTCAGCCTCAGCCTGG CGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTRE|psqpqp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27095 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(89%)| PNP_UDP_1(92%)| 2 2 2 268 100 ENST00000644715.2 ENST00000650946.1 downstream upstream mismatches(1) TGCCATATTCCAATGGCTGAGCCGTTTTGCCCCAAAACGAGAGAG___GTTCTTATAGAGACTGCTAAGAAGCTAGGACTCCGGTGCCACTCAAAGGGGACAATGGTCACAATCGAG...CTGGAATTTGTTACGCAAGTATCGCCATGGCGACAGATTATGACTGCTGGAAGGAGCACGAGGAAGCA|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAAC...CATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGG GICYASIAMATDYDCWKEHEEA|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27096 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 2 1 2 174 100 ENST00000644715.2 ENST00000650946.1 downstream upstream mismatches(1) CGAGGAAGCA___GTTTCGGTGGACCGGGTCTTAAAGACCCTGAAAGAAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|TGTCCCTTTTGATGAGAAGAATAAGCCTCATTCTGATTCAACAGCAGAGATCAAAGAAAAGACTTCTGTTTTCTGGCCACCAGATATATGTTATCTGTGCTTAAAGAATTGAAAAACACACATCAAAGGAGAATTTTCTTGGAAAGAGAG___GGTTCAAGCATCACTGTTAGGTGTGCTGGAATCCTTTCCCGAGTCAGTACTGCTTTCTAGAAGAAAACCGG EEAVSVDRVLKTLKENANKAKSLLLTTIPQIGSTEWSETLHNLK|cpf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27097 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22029433:+ chr9:21994138-22128102:+ chr9:22029432:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(43%)| PNP_UDP_1(27%)| 0 1 2 335 157 ENST00000644715.2 ENST00000645313.2 downstream upstream low_entropy(4),mismatches(3) GTTGGCACAGCCACCGCTCTGTGGCTCcCTTGGgTCCCcTtGTCCCccagGCTCGCCCACcGCAGATTCCTTTCCCGTGCAGACATGGCCTCTGGCACCACCACCACCGCCGTGAAG___ATTGGAATAATTGGTGGAACAGGCCTGGATGATCCAGAAATTTTAGAAGGAAGAACTGAAAAATATGTGGATACTCCATTTGGCAAG___CCATCTGATGCCTTAATTTTGGGGAAGAT...GAGGGCTGTACACATGTCATAGTGACCACAGCTTGTGGCTCCTTGAGGGAGGAGATTCAGCCCGGCGATATTGTCATTATTGATCAGTTCATTGACAG|GACTATTTGCCACGACATTTCAAAGGATTCCAAGAGAGAATATTGGTGTCCATGCTGTGATGATTCCTCAGCTCCTCTCATCTGATCTCCGTCCTGGCCCCCATGACTTTCTTTGTGGTAGTTAGGGTGTGGTATGTGCCACTGAGGCCCACACCTATTGCTGTAAGTGCTGTTTG...AATCACTAAGATGTTAGTATTGTAATATTAATATTACATGATTTAAATTAGGAAAAATGTGTTTTCTATTACAAAATGGATAGTGGATAATTTAAGTAaAG EGCTHVIVTTACGSLREEIQPGDIVIIDQFIDr|tichdiskdskreywcpccddssapli* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27098 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046317:+ chr9:21994138-22128102:+ chr9:22046316:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through medium none Phosphorylase_superfamily(100%)| PNP_UDP_1(100%)| 0 1 2 174 72 ENST00000644715.2 ENST00000428597.6 downstream upstream mismatches(1) AAAACGCTAATAAAGCCAAAAGCTTACTGCTCACTACCATACCTCAGATAGGGTCCACAGAATGGTCAGAAACCCTCCATAACCTGAAG|ATATTGAGAAACCACAGAAAGAGAGAAGTTAAATAATTTTCCTGTCAAAGACCACATCAATGATGAAGCCAGAATTTGAGCTCATGTACTTAACCACTGGAC NANKAKSLLLTTIPQIGSTEWSETLHNLK|ilrnhrkrevk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27103 ATP9B::ZNF516 ENSG00000166377.21::ENSG00000101493.11 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP9B ENSG00000166377.21 protein_coding + + chr18:79069285-79378287:+ chr18:79277196:+ chr18:76829285-77138287:+ chr18:77037196:+ ZNF516 ENSG00000101493.11 protein_coding - - chr18:76357682-76495242:- chr18:76380303:- chr18:74069637-74207198:- chr18:74092259:- chr18:79282129,chr18:79282130,chr18:79282786,chr18:79282816,chr18:79282841 chr18:76397976,chr18:76397975,chr18:76484418,chr18:76484418,chr18:76484418 NA NA chr18:77042129,chr18:77042130,chr18:77042786,chr18:77042816,chr18:77042841 chr18:74109932,chr18:74109931,chr18:74196374,chr18:74196374,chr18:74196374 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none E1-E2_ATPase(100%),Phospholipid-translocating_ATPase_N-terminal(100%),haloacid_dehalogenase-like_hydrolase(0%)|Zinc_finger__C2H2_type(25%) E1-E2_ATPase(100%),Hydrolase(0%),PhoLip_ATPase_N(100%)|zf-C2H2(15%) 2 1 1 40 42 ENST00000307671.12 ENST00000443185.7 downstream downstream duplicates(1) GTTTCCAGGCCTACAGGGTTCCAGCCTTCTGCTCCACTCCACTGCCTCCAG___TTTGCGTGTGAACTTGGACATGGGCAAAGCGGTGTATGGATGGATGATGATGAAAGATGAGAACATCCCTGGCACGGTCGTTCGGACCAGCACTATCCCAGAGGAACTTGGGCGCCTGGTGTATTTATTGACAGACAAAACAG|GGGGACAGCCGCGCCGCTGCTGCTTTTCCGAAGAGGTGACTTCGACCGAGCTCTCCAGTGGAGACCAGAGTCACAAGATGGGAGATAACGCCTCGGAAAGAGACACCGGCGAGTCCAAGGCAGGGATCGCAGCTTCTGTGTCCATACTTGAAAACAGTAGCAGAGAGACTTCTAG fpglqgsslllhstasSLRVNLDMGKAVYGWMMMKDENIPGTVVRTSTIPEELGRLVYLLTDKT|gGQPRRCCFSEEVTSTELSSGDQSHKMGDNASERDTGESKAGIAASVSILENSSRETS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27104 ITGB5::ZNF148 ENSG00000082781.12::ENSG00000163848.21 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4564 TRUE 1730 ITGB5 ENSG00000082781.12 protein_coding - - chr3:124761948-124901418:- chr3:124809022:- chr3:124480795-124620265:- chr3:124527869:- ZNF148 ENSG00000163848.21 protein_coding - - chr3:125225669-125375325:- chr3:125323444:- chr3:124944513-125094169:- chr3:125042288:- chr3:124798217,chr3:124798222,chr3:124798222 chr3:125328947,chr3:125328948,chr3:125328949 NA NA chr3:124517064,chr3:124517069,chr3:124517069 chr3:125047791,chr3:125047792,chr3:125047793 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none Integrin_beta_chain_VWA_domain(100%),Integrin_plexin_domain(100%)|Zinc_finger__C2H2_type(100%) Integrin_beta(77%),PSI_integrin(100%)|zf-C2H2(100%) 1 0 3 290 93 ENST00000296181.9 ENST00000360647.9 upstream downstream mismatches(1) ATTTTAGATGGAGcCTCCAAAAATATTATTCAACTGATTATTAATGgATACAAT___AGTATCCGGTCTAAAGTGGAGTTGTCAGTCTGGGATCAGCCTGAGGATCTTAATCTCTTCTTTACTGCTACCTGCCAAGATGGGGTATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG|GAATCGGATGGCATAAGTGATTAAGGTGGTATTGAGGATTTCTGAAGCCTATGAAAGGTAGAAACTCAACCATGATTTCTTTTTCAACTCTACAGCATTCCTTTCCTTGAAGTCTTCGTTTTTACCTTAGTCTCGG___GCAGTTATACTTAAGCATGAACATTGACGACAAACTGGAAGGATTGTTTCTTAAATGTGGCGGCATAGACGAAATGCAGTCTTC ILDGaSKNIIQLIINgYNSIRSKVELSVWDQPEDLNLFFTATCQDGVSYPGQRKCEGLKIGDT|esdgisd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 124527869|124527869 TRUE|TRUE 125032500|125033897 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27105 ITGB5::ZNF148 ENSG00000082781.12::ENSG00000163848.21 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary arriba TRUE TRUE FALSE NA TRUE 4564 TRUE 1730 ITGB5 ENSG00000082781.12 protein_coding - - chr3:124761948-124901418:- chr3:124809022:- chr3:124480795-124620265:- chr3:124527869:- ZNF148 ENSG00000163848.21 protein_coding - - chr3:125225669-125375325:- chr3:125288228:- chr3:124944513-125094169:- chr3:125007072:- chr3:124798217,chr3:124798222,chr3:124798222 chr3:125328947,chr3:125328948,chr3:125328949 NA NA chr3:124517064,chr3:124517069,chr3:124517069 chr3:125047791,chr3:125047792,chr3:125047793 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none Integrin_beta_chain_VWA_domain(100%),Integrin_plexin_domain(100%)|Zinc_finger__C2H2_type(100%) Integrin_beta(77%),PSI_integrin(100%)|zf-C2H2(100%) 0 1 0 290 160 ENST00000296181.9 ENST00000360647.9 upstream downstream none ATCCTATCCTGGTCAGAGGAAGTGTGAGGGTCTGAAGATTGGGGACACG|ATAAGCGTAAAGCAGGAAATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAATCAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGTTCTCC SYPGQRKCEGLKIGDT|ISVKQEITFTDVSEQLMRDKKQIREPVDLQKKKKRKQRS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 124527869|124527869 TRUE|TRUE 125032500|125033897 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27137 EZR::SYTL3 ENSG00000092820.19::ENSG00000164674.17 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EZR ENSG00000092820.19 protein_coding - - chr6:158765741-158819368:- chr6:158818082:- chr6:159186773-159240400:- chr6:159239114:- SYTL3 ENSG00000164674.17 protein_coding + - chr6:158650014-158764876:+ chr6:158671732:- chr6:159071046-159185908:+ chr6:159092764:- chr6:158807285,chr6:158807287 chr6:158676142,chr6:158676141 NA NA chr6:159228317,chr6:159228319 chr6:159097174,chr6:159097173 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' high none none none 154 103 153 4156 523 ENST00000367075.4 unknown upstream downstream duplicates(123),mismappers(23),mismatches(30) GCGGCGGGGAGCACACGGAGCACTGCAGGCGCCGG___GTTGGGACAGCGTCTTCGCTGCTGCTGGATAGTCGTGTTTTCGGGGATCGAGGATACTCACCAGAAACCGAAAATGCCGAAACCA|ACTGAGTCTCGCTGTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCCAGAGATTCTCCTGCCTCAGCCTCCTCCAGAGTAGCTGGGATTACAGGGGTGCGCCATCATGCCCGGCTAATTTTTGTATTTTCAGTAGAGATGGGATTTCACCATGTTGGCCAGGCTGGTCTTCAACTCCTGACCTCAAGTGATCTACCCGCCTCAGCCTCCCAAAGTGATGGGATTACAGGCATGAGCCACCGATAAAATTATC MPKP|tesrcqltatsasqvpeillpqpppe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ezrin 1 Yes NSCLC epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27138 GUSB::WASL ENSG00000169919.17::ENSG00000106299.8 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GUSB ENSG00000169919.17 protein_coding - - chr7:65960684-65982215:- chr7:65980224:- chr7:65425671-65447202:- chr7:65445211:- WASL ENSG00000106299.8 protein_coding - + chr7:123681943-123749003:- chr7:123717357:+ chr7:123321997-123389057:- chr7:123357411:+ chr7:65979476,chr7:65979482 chr7:123716929,chr7:123716923 NA NA chr7:65444463,chr7:65444469 chr7:123356983,chr7:123356977 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Glycosyl_hydrolases_family_2__sugar_binding_domain(50%)| Glyco_hydro_2_N(70%)| 38 106 130 598 373 ENST00000304895.9 unknown upstream upstream duplicates(66),low_entropy(4),mismatches(12) GGCGGCCGCTGTGGGAG___TCAGGCCCCACCGTGGACATGCCAGTTCCCTCCAGCTTCAATGACATCAGCCAGGACTGGCGTCTGCGGCATTTTGTCGGCTGGGTGTGGTACGAACGGGAGGTGATCCTGCCGGAGCGATGGACCCAGGACCTGCGCACAAGAGTGGTGCTGAGGATTGGCAGTGCCCATTCCTATGCCATCGTG|GACCAGCAGCAACTGTAGCCTCATGCCTAGGGGCTCCTCTTTAGCTGTCCCTGAAGATGATCGTGGTACTTCCATCAAGAATGCACTATCTCTGTATCCGCCTAGCTCCTAGCAGTAATTTCCTGTCCCTCTTGGACCACATGATGCATCCGGACTCAATCTTTAACCCAAGGATTTGCATGAGTGTTGCCCAGCTCCTGCTGGGTGTGACATACTATGATCCAACTACATGGACACTTCAGGGGTCAGGGACAGTGGTCCAAACAAATGAGATGTAAAGTTC RPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVVLRIGSAHSYAIV|dqqql* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27145 PMM2::ABAT ENSG00000140650.13::ENSG00000183044.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2495 TRUE 4573 TRUE 1731 PMM2 ENSG00000140650.13 protein_coding + + chr16:8788823-8862534:+ chr16:8813106:+ chr16:8882680-8956391:+ chr16:8906963:+ ABAT ENSG00000183044.12 protein_coding + + chr16:8674596-8784575:+ chr16:8764738:+ chr16:8768453-8878432:+ chr16:8858595:+ chr16:8845194,chr16:8845192 chr16:8764698,chr16:8764693 NA NA chr16:8939051,chr16:8939049 chr16:8858555,chr16:8858550 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Eukaryotic_phosphomannomutase(84%)|Aminotransferase_class-III(80%) Hydrolase_3(30%),PMM(24%),TMEM70(100%)|Aminotran_3(50%) 22 14 28 300 394 ENST00000566983.5 ENST00000268251.13 downstream upstream duplicates(23),mismatches(1) CCAAGATTTAATCAACTACTGTCTGAGCTACATTGCGAAAATTAAACTCCCGAAGAAGAG___GGGTACTTTCATTGAATTCCGAAATGGGATGTTAAACGTGTCCCCTATTGGAAGAAGCTGCAGCCAAGAAGAACGCATTGAGTTCTACGAACTCGATAAA___AAAGAAAATATAAGACAAAAGTTTGTAGCAGATCTACGGAAAGAGTTTGCTGGAAAAGGCCTCACGTTTTCCATAG___GAGGCCAGATCAGCTTTGATGTCTTTCCTGATGGATGGGACAAGAGATACTGTCTGCGACATGTGGAAAATGACGGTTATAAGACCATTTATTTCTTTGGAGACAAAACTATGCCA|GTGGCTCCCAAAGGGATGTCCCAGCTCATCACCATGGCCTGCGGCTCCTGCTCCAATGAAAACGCCTTAAAGACCATCTTCATGTGGTACCGG___AGCAAGGAAAGAGGGCAGAGGGGCTTCTCCCAGGAGGAGCTGGAGACGTGCATGATTAACCAG___GCCCCTGGCTGCCCCGACTACAGCATCCTCTCCTTCATGGGCGCGTTCCATGGGAGGACCATGG___GTTGCTTAGCGACCACGCACTCTAAAGCCATTCACAAGATCGAC QDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMP|VAPKGMSQLITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 8905570|8895767 FALSE|FALSE 8829556|8829556 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27146 PMM2::ABAT ENSG00000140650.13::ENSG00000183044.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4573 TRUE 1731 PMM2 ENSG00000140650.13 protein_coding + + chr16:8788823-8862534:+ chr16:8813106:+ chr16:8882680-8956391:+ chr16:8906963:+ ABAT ENSG00000183044.12 protein_coding + + chr16:8674596-8784575:+ chr16:8766208:+ chr16:8768453-8878432:+ chr16:8860065:+ chr16:8845194,chr16:8845192 chr16:8764698,chr16:8764693 NA NA chr16:8939051,chr16:8939049 chr16:8858555,chr16:8858550 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Eukaryotic_phosphomannomutase(84%)|Aminotransferase_class-III(73%) Hydrolase_3(30%),PMM(24%),TMEM70(100%)|Aminotran_3(45%) 2 1 12 300 368 ENST00000566983.5 ENST00000268251.13 downstream upstream duplicates(5) AACGCATTGAGTTCTACGAACTCGATAAA___AAAGAAAATATAAGACAAAAGTTTGTAGCAGATCTACGGAAAGAGTTTGCTGGAAAAGGCCTCACGTTTTCCATAG___GAGGCCAGATCAGCTTTGATGTCTTTCCTGATGGATGGGACAAGAGATACTGTCTGCGACATGTGGAAAATGACGGTTATAAGACCATTTATTTCTTTGGAGACAAAACTATGCCA|AGCAAGGAAAGAGGGCAGAGGGGCTTCTCCCAGGAGGAGCTGGAGACGTGCATGATTAACCAG___GCCCCTGGCTGCCCCGACTACAGCATCCTCTCCTTCATGGGCGCGTTCCATGGGAGGACCATGG___GTTGCTTAGCGACCACGCACTCTAAAGCCA RIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMP|SKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 8905570|8895767 FALSE|FALSE 8829556|8829556 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27156 SH3GL2::SLC24A2 ENSG00000107295.10::ENSG00000155886.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SH3GL2 ENSG00000107295.10 protein_coding + + chr9:17579066-17797124:+ chr9:17579287:+ chr9:17579064-17797122:+ chr9:17579285:+ SLC24A2 ENSG00000155886.12 protein_coding - + chr9:19507452-19789037:- chr9:19665050:+ chr9:19507450-19789035:- chr9:19665048:+ chr9:17641439,chr9:17641440 chr9:19598936,chr9:19598930 NA NA chr9:17641437,chr9:17641438 chr9:19598934,chr9:19598928 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none BAR_domain(4%)| BAR(0%)| 15 11 29 337 45 ENST00000380607.5 unknown downstream upstream duplicates(10),mismatches(4) TGTCCCGCTAGGCTCCGCGCCCTCGCGCCCATAGCCCCGGCGGCGGCACGACCAGAGGCGGCCAGGGGAGCGCGCCGCCCCGCTCGGCCCTCCAGTCCCgCTCCGCCgCCTCCCTCCCGCACAGCAGCCGCCAGCGCGGCCTCCTGCACCATGTCGGTGGCCGGCCTCAAGAAGCAGTTCCATAAAGCCACTCAG|AATTTCAAGGCTGCCTGCTGTGTGGCTGTTGATACTGCAGGCCCTCACTCTTACCAGTAAGATCCGCCTGCTCTTGAGGAAAGCCGGTGAGAAGCAGTAGACAGGGGAATGACACCATCTATCTGAG MSVAGLKKQFHKATQ|nfkaaccvavdtagphsyq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27157 DPH5-DT::ENSG00000233359 ENSG00000233184.9::ENSG00000233359.2 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DPH5-DT ENSG00000233184.9 lncRNA + + chr1:101025844-101090513:+ chr1:101026061:+ chr1:101491400-101556069:+ chr1:101491617:+ ENSG00000233359 ENSG00000233359.2 lncRNA - + chr1:102199739-102389630:- chr1:102321525:+ chr1:102665295-102855186:- chr1:102787081:+ chr1:101045593,chr1:101045591 chr1:102296847,chr1:102296842 NA NA chr1:101511149,chr1:101511147 chr1:102762403,chr1:102762398 NA NA sense antisense unknown exon/splice-site intron deletion/5'-5' high none none none 8 8 33 38 37 ENST00000659528.3 unknown downstream upstream duplicates(6),low_entropy(1),mismatches(1) AGCGGGCTACTGGGCTGCGGAGACCAGAGCCCGGCTCCACTGAAGAAACCCGCCGGCTGCTGGGGCAGGGCGGCGAAAGGTCAGTCGGCCGAGAGGAGTCCGTGGAGCCACCGTTTCATAGCCTCAGGGAAAGGATCGGGCGTGCTCACGAGCCCTCTAACCCATGGCTTAAACACCCGCTTCCTAAGCCTGG|ACCATAATGAAAGGGTGGAGAATCCATGTTGAAACCTGGTGAGCCCTTACATTGAGATGCCAGAGTGAAGAGTCCAAGGAGACCTAGAGTTTGCAGGAAAAATAATAAAGAAGCTGGGAGAG___TTCTAGAGCACGAAGTCCAAGATCAAGGTTTTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27158 S1PR2::CHASERR ENSG00000267534.4::ENSG00000272888.8 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4575 FALSE NA S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10231204:- chr19:10332109-10342007:- chr19:10341880:- CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92897724:+ chr15:93362770-93442931:+ chr15:93440954:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 6 10 14 118 955 ENST00000646641.1 ENST00000653163.1 upstream upstream duplicates(2) CTCGTCCCAGCCCCGGGACTTAGCCGAGCCCGGCTGGCAACCCCAGCCCCAGCCGCGGCCGCCCTGGGGACGCAGACGCCAAGGCCCCTCCGGCCAGGGCCGGGAGCCGGGCCGGCCTAGCCAG|CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAGGAAAAATGGATTAATACAAGAGTCCTGTGATAATATACAACCAAGACAGGGTTCTTTTAACATGGATTCCATGCAGTGAATGAAGACATAGGTTTCTTACCCAACACAAATGGACAGTGGATTTGACTTTCTAAAGACTTTTTTTGTGGACATTTTGACATTTGGAGAAGAAAGATGGCACACTAACCCAGATAATAGTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27162 MYO3A::SCD5 ENSG00000095777.17::ENSG00000145284.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE TRUE 2496 TRUE 4576 TRUE 1732 MYO3A ENSG00000095777.17 protein_coding + + chr10:25934229-26212532:+ chr10:25955008:+ chr10:26223158-26501461:+ chr10:26243937:+ SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82705413:- chr4:83550692-83719949:- chr4:83626566:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Protein_kinase_domain(30%)|Fatty_acid_desaturase(98%) PK_Tyr_Ser-Thr(3%),Pkinase(3%)|FA_desaturase(44%) 8 4 12 84 99 ENST00000642920.2 ENST00000319540.9 downstream downstream duplicates(7),mismappers(1),mismatches(1) GCCCAGGGCCCCAGTGCAGCCTGGACACAGTATTCAAAGTTTTGGCGTCTGAGCATTGTTATGCGTTATTTTCAAGCTTTGCTAACG___...TGGCAAAGGAACTTATGGGAAAGTTTTTAAAGTATTGAATAAGAAAAATGGCCAAAAAGCAGCAGTCAAAATTCTTGATCCAATTCAC___GATATTGACGAAGAGATTGAAGCAGAATATAACATCTTAAAAGCACTTTCTGACCACCCTAATGTGGTCAGATTCTATGGGATATACTTTAAGAAGGATAAAGTAAATGGAGACAAGCTGTGGTTGGTTCTTGAG|CCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAG___AATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCC GKGTYGKVFKVLNKKNGQKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVRFYGIYFKKDKVNGDKLWLVLE|ptsasswplwv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Myosin-IIIa STE STE20 NinaC Q8NEV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27163 MYO3A::SCD5 ENSG00000095777.17::ENSG00000145284.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE FALSE FALSE NA TRUE 4576 TRUE 1732 MYO3A ENSG00000095777.17 protein_coding + + chr10:25934229-26212532:+ chr10:25935830:+ chr10:26223158-26501461:+ chr10:26224759:+ SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82705413:- chr4:83550692-83719949:- chr4:83626566:- NA NA NA NA NA NA NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Fatty_acid_desaturase(98%) |FA_desaturase(44%) 2 1 3 125 99 ENST00000642920.2 ENST00000319540.9 downstream downstream duplicates(2) GAGGGAGCGCCCGTAGCCAGCGCCCCCGTAAAGAAATAAGGAGGCGCCCGGCTTCCCGCCCAG___GCCCAGGGCCCCAGTGCAGCCTGGACACAGTATTCAAAGTTTTGGCGTCTGAGCATTGTTATGCGTTATTTTCAAGCTTTGCTAACG|CCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAG___AATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAG...TTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Myosin-IIIa STE STE20 NinaC Q8NEV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27164 SLCO1A2::C2CD5 ENSG00000084453.17::ENSG00000111731.13 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2497 TRUE 4577 TRUE 1733 SLCO1A2 ENSG00000084453.17 protein_coding - - chr12:21264600-21419594:- chr12:21292164:- chr12:21417534-21572528:- chr12:21445098:- C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22493337:- chr12:22601517-22697480:- chr12:22646271:- chr12:21277259,chr12:21277263 chr12:22505700,chr12:22505701 NA NA chr12:21430193,chr12:21430197 chr12:22658634,chr12:22658635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Kazal-type_serine_protease_inhibitor_domain(100%),Organic_Anion_Transporter_Polypeptide_(OATP)_family(91%)| Calc_CGRP_IAPP(100%),Kazal_2(100%),MFS_1(100%),OATP(60%)| 8 7 7 107 327 ENST00000307378.10 ENST00000333957.8 upstream downstream duplicates(3),inconsistently_clipped(1),low_entropy(1) CGGGAATAAACATG___GTGTTCCAAAATTGCAGCTGTATTCAAACATCAGGAAATTCATCTGCAGTTCTTGGGCTGTGCGACAAAGGACCTGACTGTTCCTTGATGCTCCAGTACTTCCTAATCTTGTCAGCGATGAGCAGTTTCATTTATTCTTTGGCTGCCATACCTGGATATATGGTTCTCTTGAG|ATGAACCAGAAACTCGAGATGCATGGTGGGCAGAAATCAGACAAGAAATAAAATCACATGCTAAAGCATTAGGCTGTCATGCTGTAGTGGGCTACAGTGAATCAACTAGCATCTG___TGAAGAGGTCTGCATTTTATCTGCATCTGGCACAGCGGCTGTACTGAATCCTAGATTTCTGCAGGATGGCACCGTGGAAGGCTGTTTGGAACAGAG___GCTTGAAGAAAATTTGCCTACACGTTGTGGATTTTGTCATATACCATATGATGAACTGAATATGCCATTTCCAGCTCATCTCACATATTGCTATAACTGCA GINMVFQNCSCIQTSGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGYMVLLr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27165 SLCO1A2::C2CD5 ENSG00000084453.17::ENSG00000111731.13 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4577 TRUE 1733 SLCO1A2 ENSG00000084453.17 protein_coding - - chr12:21264600-21419594:- chr12:21292164:- chr12:21417534-21572528:- chr12:21445098:- C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22484888:- chr12:22601517-22697480:- chr12:22637822:- chr12:21277259,chr12:21277263 chr12:22505700,chr12:22505701 NA NA chr12:21430193,chr12:21430197 chr12:22658634,chr12:22658635 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Kazal-type_serine_protease_inhibitor_domain(100%),Organic_Anion_Transporter_Polypeptide_(OATP)_family(91%)| Calc_CGRP_IAPP(100%),Kazal_2(100%),MFS_1(100%),OATP(60%)| 0 1 2 107 316 ENST00000307378.10 ENST00000333957.8 upstream downstream none CTTGGGCTGTGCGACAAAGGACCTGACTGTTCCTTGATGCTCCAGTACTTCCTAATCTTGTCAGCGATGAGCAGTTTCATTTATTCTTTGGCTGCCATACCTGGATATATGGTTCTCTTGAG|GCTTGAAGAAAATTTGCCTACACGTTGTGGATTTTGTCATATACCATATGATGAACTGAATATGCCATTTCCAGCTCATCTCACATATTGCTATAACTGCAGGAAACAAAAAGTTCCTGATGTTCTGTTTACAACTATAGACCTCCC LGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGYMVLLr|LEENLPTRCGFCHIPYDELNMPFPAHLTYCYNCRKQKVPDVLFTTIDL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27169 ZNF443::CACNA1A ENSG00000180855.16::ENSG00000141837.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2499 FALSE NA FALSE NA ZNF443 ENSG00000180855.16 protein_coding - - chr19:12429706-12441021:- chr19:12430900:- chr19:12540520-12551835:- chr19:12541714:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13286966:- chr19:13317256-13743839:- chr19:13397780:- chr19:12430586,chr19:12430586,chr19:12430594 chr19:13290160,chr19:13290156,chr19:13290165 NA NA chr19:12541400,chr19:12541400,chr19:12541408 chr19:13400974,chr19:13400970,chr19:13400979 NA NA sense sense out-of-frame CDS CDS/splice-site duplication high none KRAB_box(100%),Zinc_finger__C2H2_type(59%)|Ion_transport_protein(51%),Voltage-dependent_L-type_calcium_channel__IQ-associated(100%),Voltage_gated_calcium_channel_IQ_domain(100%) KRAB(100%),zf-C2H2(59%),zf-C2H2_6(40%),zf-met(100%)|Ca_chan_IQ(100%),GPHH(100%),Ion_trans(26%) 7 0 8 76 608 ENST00000301547.10 ENST00000664864.1 upstream downstream none GGAAGCTTTCAAAGACACATGATAAGGCACACTGGAAATGGACCTCATAAATGTAAGATATGTGGGAAAGGCTTTGATTGTCCTAGTTCACTGCAAAGTCATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGCAAGCAGTGTGGGAAAGCATTATCTCATCGCTCAAGCTTTCGAAGTCATATGATAATGCACACTGGAGATGGACCTCATAAATGCAAG|AGAGAACCAGGGCTCCGGGGTCCCTGTGTCGGGCCCCAACCTGTCAACCACCCGGCCAATCCAGCAGGACCTGGGCCGCCAAGACCCACCCCTGGCAGAGGATATTGACAACATGAAGAACAACAAGCTGGCCACCGCGGAGTCGGCCGCTCCCCACGGCAGCCTTGGCC GSFQRHMIRHTGNGPHKCKICGKGFDCPSSLQSHERTHTGEKPYECKQCGKALSHRSSFRSHMIMHTGDGPHKCK|repglrgpcvgpqpvnhpanpagpgpprptpgrgy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27174 SYN3::LARGE1 ENSG00000185666.16::ENSG00000133424.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2500 FALSE NA FALSE NA SYN3 ENSG00000185666.16 protein_coding - - chr22:32507820-33058381:- chr22:32980645:- chr22:32903807-33454367:- chr22:33376630:- LARGE1 ENSG00000133424.22 protein_coding - - chr22:33162226-33922841:- chr22:33166832:- chr22:33558212-34318829:- chr22:33562818:- chr22:32935073,chr22:32935077 chr22:33229640,chr22:33229641 NA NA chr22:33331058,chr22:33331062 chr22:33625626,chr22:33625627 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Synapsin_N-terminal(100%),Synapsin__N-terminal_domain(33%)|Glycosyl-transferase_for_dystroglycan(0%) Synapsin(18%),Synapsin_N(100%)|Glyco_transf_49(0%) 4 2 5 74 14 ENST00000358763.7 ENST00000608642.6 upstream downstream none CAGCAGCCTGTCTTCTGGGCCTCACCTACACACGTCTGGGTAGGAGCCAGTCATCTCCATCCATCCACAGCCATGAATTTCCTCCGGCGACGTCTCTCTGACAGCAGCTTCATGGCCAACCTGCCTAATGGCTATATGACGGACCTGCAACGCCCAGATAGCTCCACCAGCTCACCTGCTTCCCCCGCCATGGAGAGG...CTCCAGTGCCATGAAGCAGGCCCCTCAGGCCACCTCAGGACTGATGGAGCCTCCAGGTCCCTCCACGCCCATTGTTCAAAGACCCAGGATCCTGTTGGTGATCGATGATGCCCATACAGACTG___GTCGAAGTATTTCCATGGGAAGAAGGTGAATGGAGAGATTGAGATCCGAGTGGAGCAG|CTTTGATTTTAGCCAGACCCTATCTCCCATCATCAGCTGCAAGACGACAGTTCCAAACACATGCCTATAATTGTCCTCGGCGTTGGCTTCCTTCTCGAGGACTTGGGTACTGTTCTTCATGAGCCCTAATTTTACAGCATGTTGGAACGGCTCAACGTTGAAGCCAAAGTGGTACGTGCCAGGTGAACATCCTCACG...___CCATTTCCCAGATGCCTG SSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQ|l* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27175 PPP4R3B::RTN4 ENSG00000275052.5::ENSG00000115310.19 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2501 FALSE NA FALSE NA PPP4R3B ENSG00000275052.5 protein_coding - - chr2:55547292-55618880:- chr2:55603978:- chr2:55774428-55846015:- chr2:55831114:- RTN4 ENSG00000115310.19 protein_coding - - chr2:54972187-55112621:- chr2:54987698:- chr2:55199323-55339757:- chr2:55214834:- chr2:55603361,chr2:55603369 chr2:54991268,chr2:54991273 NA NA chr2:55830497,chr2:55830505 chr2:55218404,chr2:55218409 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Reticulon(99%) |Reticulon(18%) 4 6 1 175 770 ENST00000616407.2 ENST00000404909.5 upstream downstream duplicates(1) GTCCGACG___GATCACTACTCTTGGAATCAAAGATAAATCCAAATACTGCATATCAGAAACAACAG___GATACATTAATTGTTTGGTCAGAAGCAGAGAACTATGATTTGGCTCTGAGTTTTCAGGAGAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAG|TTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCAGCCTATTCCTGCTGCTTTCATTGACAGTATTCAGCATTGTGAGCGTAACAGCCTACATTGCCTTGGCCCTGCTCTCTGTG...TACAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAGGCCACCCATTCAG___...AGGGCATATCTGGAATCTGAAGTTGCTATATCTGAGGAGTTGGTTCAGAAGTACAGTAATTCTGCTCTTGGTCATGTGAACTGCACGATAAAGGAACT SDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQ|lltsctgetlrrlewclvpaysccfh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27176 POLDIP3::CYB5R3 ENSG00000100227.19::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2502 TRUE 4579 TRUE 1734 POLDIP3 ENSG00000100227.19 protein_coding - - chr22:42583721-42614962:- chr22:42591955:- chr22:42979727-43010968:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42627688:- chr22:43011736-43116876:- chr22:43023694:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(93%)|Oxidoreductase_NAD-binding_domain_(100%) RRM_1(45%),RRM_5(37%)|FAD_binding_6(29%),NAD_binding_1(78%) 1 4 6 393 1017 ENST00000451060.6 ENST00000692152.1 upstream downstream duplicates(2) GGCCCTCAAGCGAGCTCGACTGGTCCATCCTGGGGTAGCGGAGGTGGTGTTTGTGAAAAAGGACGATGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|GGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCATCAGGACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAG___GCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATG...TGCCAACCAG___ACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAG___CCTGGGACTACGGCCAGGGCTTCGTGAATGAGGAGATGATCCGGG ALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLD|gKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27177 POLDIP3::CYB5R3 ENSG00000100227.19::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2503 TRUE 4579 TRUE 1734 POLDIP3 ENSG00000100227.19 protein_coding - - chr22:42583721-42614962:- chr22:42591955:- chr22:42979727-43010968:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42628281:- chr22:43011736-43116876:- chr22:43024287:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(93%)|Oxidoreductase_FAD-binding_domain(37%),Oxidoreductase_NAD-binding_domain_(100%) RRM_1(45%),RRM_5(37%)|FAD_binding_6(34%),NAD_binding_1(82%) 0 1 8 393 1081 ENST00000451060.6 ENST00000692152.1 upstream downstream duplicates(3) GGACATTGTT___GAGCTTTTCTGTGTGTGTGGGGCCCTCAAGCGAGCTCGACTGGTCCATCCTGGGGTAGCGGAGGTGGTGTTTGTGAAAAAGGACGATGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|GTTTACTTCAAGGACACCCATCCCAAGTTTCCCGCTGGAGGGAAGATGTCTCAGTACCTGGAGAGCATGCAGATTGGAGACACCATTGAGTTCCGGGGCCCCAGTGGGCTGCTGGTCTACCAGGGCAAAG___GGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCA...ACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAG___GCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATGAAGGACCCTGATGACCACACTGTGTG DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLD|gllqghpsqvsrwredvsvpgehadwrhh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27178 POLDIP3::CYB5R3 ENSG00000100227.19::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4579 TRUE 1734 POLDIP3 ENSG00000100227.19 protein_coding - - chr22:42583721-42614962:- chr22:42591955:- chr22:42979727-43010968:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42623888:- chr22:43011736-43116876:- chr22:43019894:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(93%)|Oxidoreductase_NAD-binding_domain_(67%) RRM_1(45%),RRM_5(37%)|FAD_binding_6(0%),NAD_binding_1(52%) 0 1 2 393 1226 ENST00000451060.6 ENST00000692152.1 upstream downstream duplicates(1) GGACATTGTT___GAGCTTTTCTGTGTGTGTGGGGCCCTCAAGCGAGCTCGACTGGTCCATCCTGGGGTAGCGGAGGTGGTGTTTGTGAAAAAGGACGATGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|ACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAG___CCTGGGACTACGGCCAGGGCTTCGTGAATGAG...GGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCCGCCTCCCGAGTTCAAGCGATTCTTCTGCCTCAGGCTCCTGAGTAGGTGGGATTTCAGGCCGTG DIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLD|dreghpaat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27179 DNMT1::CHASERR ENSG00000130816.17::ENSG00000272888.8 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2504 FALSE NA FALSE NA DNMT1 ENSG00000130816.17 protein_coding - - chr19:10133342-10231286:- chr19:10231204:- chr19:10244018-10341962:- chr19:10341880:- CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92897724:+ chr15:93362770-93442931:+ chr15:93440954:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense unknown 5'UTR/splice-site exon/splice-site translocation high none none none 1 8 1 118 955 ENST00000588952.5 ENST00000653163.1 upstream upstream none CCTCTGTCCCTCGTCCCAGCCCCGGGACTTAGCCGAGCCCGGCTGGCAACCCCAGCCCCAGCCGCGGCCGCCCTGGGGACGCAGACGCCAAGGCCCCTCCGGCCAGGGCCGGGAGCCGGGCCGGCCTAGCCAG|CACCCAGTCAGCTTGAAGAGTTTCAAATGGACCCTACCACTGAGAAATCAAGATGGCAGTCTACTATGGGGAATTGAGGAAAAATGGATTAATACAAGAGTCCTGTGATAATATACAACCAAGACAGGGTTCTTTTAACATGGATTCCATGCAGTGAATGAAGACATAGGTTTCTTACCCAACACAAATGGACAGTGGATTTGACTTTCTAAAGACTTTTTTTGTGGACATTTTGACATTTGGAGAAGAAAGATGGCACACTAACCCAGATAATAGTTTTTATGCCTGGAATTTTTTGCAGTTTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27183 PROM1::TAPT1 ENSG00000007062.12::ENSG00000169762.17 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4580 TRUE 1735 PROM1 ENSG00000007062.12 protein_coding - - chr4:15963076-16084378:- chr4:16075687:- chr4:15964699-16086001:- chr4:16077310:- TAPT1 ENSG00000169762.17 protein_coding - - chr4:16160505-16227410:- chr4:16213898:- chr4:16162128-16229033:- chr4:16215521:- chr4:16072760,chr4:16072765 chr4:16222165,chr4:16222167 NA NA chr4:16074383,chr4:16074388 chr4:16223788,chr4:16223790 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Prominin(6%)|Eukaryotic_membrane_protein_family(100%) Prominin(0%)|DUF747(100%) 3 1 2 12 115 ENST00000505450.5 ENST00000405303.7 upstream downstream duplicates(1) CTTGAGTGAATGACCCCCTTGGAGAACATTCTTCCGCATCCCTCGCCTCAAGCCAGCCTCAGACAGAAAACTGAAGATTCAGCAGATCCAGTGCTTCCTGC...CCTCATGTTTGGAGGAaCTTGCTAGCTATGGCCCTCGTACTCGGCTCCCTGTTGCTGCTGGGGCTGTGCGGGAACTCCTTTTCAGGAGGGCAGCCTTCATCCACAGATGCTCCTAAGGCTTGGAATTATGAATTGCCTGCAACAAATTATGAGACCCAAGACTCCCATAAAGCTGGACCCATTGGCATTCTCTTTGAACTAGTGCATATCTTTCTCTATGTGGTACAGCCGCGTGATTTCCCAGAAG|AGCTTTCATTGTTGAGGTTCCTCAGTGCTGAACTAACAAGAGGGTACTTCCTTGAACATAATGAGGCCAAGTATACAGAAAGAAGAGAAAGAGTATACACTTGTTTGCGAATACCAAGAGAATTGGAAAAG___CTGATGGTTTTTGGAATCTTTCTGTGCCTGGATGCGTTTTTGTATGTGTTCACCCTGCTTCCTTTAAGAGTTTTCCTGGCA MALVLGSLLLLGLCGNSFSGGQPSSTDAPKAWNYELPATNYETQDSHKAGPIGILFELVHIFLYVVQPRDFPE|eLSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27184 PROM1::TAPT1 ENSG00000007062.12::ENSG00000169762.17 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4580 TRUE 1735 PROM1 ENSG00000007062.12 protein_coding - - chr4:15963076-16084378:- chr4:16075687:- chr4:15964699-16086001:- chr4:16077310:- TAPT1 ENSG00000169762.17 protein_coding - - chr4:16160505-16227410:- chr4:16191523:- chr4:16162128-16229033:- chr4:16193146:- chr4:16072760,chr4:16072765 chr4:16222165,chr4:16222167 NA NA chr4:16074383,chr4:16074388 chr4:16223788,chr4:16223790 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Prominin(6%)|Eukaryotic_membrane_protein_family(100%) Prominin(0%)|DUF747(100%) 0 1 0 12 204 ENST00000505450.5 ENST00000405303.7 upstream downstream none CTTTCTCTATGTGGTACAGCCGCGTGATTTCCCAGAAG|GGACAGACGTTTGCTTCAGCCTGCCCAGGTGTGTGACATTTTGAAGGGTGTCATTTTGGTAAT...TTACTATCATGATGTCTAATAAT___TTTGTTGAAATTAAAGGAAGTGTTTTCAAGAAGTTTGAAAAGAACAATCTCTTTCAAATGTCAAATAGCG___ATATTAAG FLYVVQPRDFPE|gtdvcfslprcvtf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27190 S1PR2::CHD2 ENSG00000267534.4::ENSG00000173575.24 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4582 TRUE 1736 S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10231204:- chr19:10332109-10342007:- chr19:10341880:- CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92901167:+ chr15:93429433-93571226:+ chr15:93444397:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense unknown 5'UTR/splice-site 5'UTR/splice-site translocation high none |CDH1/2_SANT-Helical_linker_1(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Domain_of_unknown_function_(DUF4208)(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |CDH1_2_SANT_HL1(100%),Chromo(100%),DUF4208(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 0 1 2 118 311 ENST00000646641.1 ENST00000394196.9 upstream upstream duplicates(1) CTTAGCCGAGCCCGGCTGGCAACCCCAGCCCCAGCCGCGGCCGCCCTGGGGACGCAGACGCCAAGGCCCCTCCGGCCAGGGCCGGGAGCCGGGCCGGCCTAGCCAG|TAAATACCTGGGCACAGGACTTCAAAGCAAACACAGATTCCCCCTCCCCCTTAATA...ATAAGGACAAAAGCCAAGAGGAGGACAGTTCGCTACACAGCAATGCATCGAG___TCACTCAGCCTCTGAAGAAGCTTCGGGTTCAGACTCAGGCAGTCAGTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense 27191 S1PR2::CHD2 ENSG00000267534.4::ENSG00000173575.24 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4582 TRUE 1736 S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10231204:- chr19:10332109-10342007:- chr19:10341880:- CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92924321:+ chr15:93429433-93571226:+ chr15:93467551:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |CDH1/2_SANT-Helical_linker_1(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Domain_of_unknown_function_(DUF4208)(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%) |CDH1_2_SANT_HL1(100%),Chromo(100%),DUF4208(100%),Helicase_C(100%),ResIII(100%),SNF2-rel_dom(100%) 1 0 2 118 208 ENST00000646641.1 ENST00000394196.9 upstream upstream duplicates(1) CGGGACTTAGCCGAGCCCGGCTGGCAACCCCAGCCCCAGCCGCGGCCGCCCTGGGGACGCAGACGCCAAGGCCCCTCCGGCCAGGGCCGGGAGCCGGGCCGGCCTAGCCAG|TCACTCAGCCTCTGAAGAAGCTTCGGGTTCAGACTCAGGCAGTCAGTCGGAAAGTGAGCAGGGAAGTGATCCAGGAAGTGGACATGGCAGCGAGTCGAACAGCAGCTCTGAATCTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense 27194 TPH2::TRHDE ENSG00000139287.13::ENSG00000072657.10 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4583 FALSE NA TPH2 ENSG00000139287.13 protein_coding + + chr12:71938845-72186618:+ chr12:72047657:+ chr12:72332625-72580398:+ chr12:72441437:+ TRHDE ENSG00000072657.10 protein_coding + + chr12:72087266-72670758:+ chr12:72618891:+ chr12:72481046-73064538:+ chr12:73012671:+ chr12:72056912,chr12:72056912 chr12:72599488,chr12:72599485 NA NA chr12:72450692,chr12:72450692 chr12:72993268,chr12:72993265 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none Biopterin-dependent_aromatic_amino_acid_hydroxylase(100%)|ERAP1-like_C-terminal_domain(84%) Biopterin_H(100%)|ERAP1_C(50%) 0 1 1 2 21 ENST00000547348.5 ENST00000261180.10 downstream upstream duplicates(1) GGGTGGTAAGACAACAGGATAAGTG|GGCTGGCTATTTGCCTCAGAATATTCCTCTGGAGATTATCAGATACCTGTCTGAGGAGAAGGATTTTCTTCCTTGGCATGCTGCCAGCCGAGCTCTTTATCCTCTAGATAAATTACTGGACCGCATGGAAAACTACAACATTTTCAAT___GAATATATTTTAAAGCAAGTTGCAACAACATATATCAAGCTTGGGaGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27198 MEIOB::ENSG00000289722 ENSG00000162039.18::ENSG00000289722.1 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4584 TRUE 1737 MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1837784:- chr16:1883987-1922179:- chr16:1887785:- ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1841973:- chr16:1883988-1934295:- chr16:1891974:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none CDC24_OB3(100%),FAA_hydrolase(12%)|CDC24_OB3(100%),FAA_hydrolase(100%) 6 4 7 367 811 ENST00000325962.9 ENST00000470044.5 upstream downstream duplicates(3) CTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTCTCAGTTTCCATGTGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCCTGTAGTCTCACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACG___GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAGAAGCAAAATTTATTTAAAA|TAAGTACAATAGTTGATGTCTACACAGTTGAACAATTAAAGGGAAAAGCTTTGAAGAATGAAGGAAAAGCTGATCCTTCCTATGGCATCCTTTATGCCTACATTTCCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCA CNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGCTVHEFLAMTDEQKTALKWQFLLERSKIYLK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27199 MEIOB::ENSG00000289722 ENSG00000162039.18::ENSG00000289722.1 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4584 TRUE 1737 MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1839255:- chr16:1883987-1922179:- chr16:1889256:- ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1841973:- chr16:1883988-1934295:- chr16:1891974:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none CDC24_OB3(64%),FAA_hydrolase(0%)|CDC24_OB3(100%),FAA_hydrolase(100%) 0 1 3 654 811 ENST00000397344.7 ENST00000470044.5 upstream downstream duplicates(2),same_gene(1) CCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTCTCAGTTTCCATGTGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCCTGTAGTCTCACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACG|TAAGTACAATAGTTGATGTCTACACAGTTGAACAATTAAAGGGAAAAGCTTTGAAGAATGAAGGAAAAGCTGATCCTTCCTATGGCATCCTTTATGCCTACATTTCCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTC TLNIDDETTKVVRNRCSSCGYIVNEASNMCTTCNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGCT|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27200 MEIOB::ENSG00000289722 ENSG00000162039.18::ENSG00000289722.1 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4584 TRUE 1737 MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1837784:- chr16:1883987-1922179:- chr16:1887785:- ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1837870:- chr16:1883988-1934295:- chr16:1887871:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none CDC24_OB3(100%),FAA_hydrolase(12%)|CDC24_OB3(1%),FAA_hydrolase(88%) 0 0 0 367 419 ENST00000325962.9 ENST00000470044.5 upstream downstream duplicates(1),hairpin(1) GAGACTTTGGGCTGCACG___GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAGAAGCAAAATTTATTTAAAA|GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAG ETLGCTVHEFLAMTDEQKTALKWQFLLERSKIYLK|VHEFLAMTDEQKTALKWQFLLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27201 ENSG00000289722::MEIOB ENSG00000289722.1::ENSG00000162039.18 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4585 TRUE 1738 ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1837784:- chr16:1883988-1934295:- chr16:1887785:- MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1841973:- chr16:1883987-1922179:- chr16:1891974:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none CDC24_OB3(100%),FAA_hydrolase(12%)|CDC24_OB3(100%),FAA_hydrolase(100%) 6 4 7 367 811 ENST00000470044.5 ENST00000397344.7 upstream downstream duplicates(3) CTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTCTCAGTTTCCATGTGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCCTGTAGTCTCACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACG___GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAGAAGCAAAATTTATTTAAAA|TAAGTACAATAGTTGATGTCTACACAGTTGAACAATTAAAGGGAAAAGCTTTGAAGAATGAAGGAAAAGCTGATCCTTCCTATGGCATCCTTTATGCCTACATTTCCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCA CNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGCTVHEFLAMTDEQKTALKWQFLLERSKIYLK|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27202 ENSG00000289722::MEIOB ENSG00000289722.1::ENSG00000162039.18 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4585 TRUE 1738 ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1839255:- chr16:1883988-1934295:- chr16:1889256:- MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1841973:- chr16:1883987-1922179:- chr16:1891974:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none none CDC24_OB3(64%),FAA_hydrolase(0%)|CDC24_OB3(100%),FAA_hydrolase(100%) 0 1 3 654 811 ENST00000470044.5 ENST00000397344.7 upstream downstream duplicates(2),same_gene(1) CCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTCTCAGTTTCCATGTGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCCTGTAGTCTCACAGGAAGTGTTGCTGAGGAGACTTTGGGCTGCACG|TAAGTACAATAGTTGATGTCTACACAGTTGAACAATTAAAGGGAAAAGCTTTGAAGAATGAAGGAAAAGCTGATCCTTCCTATGGCATCCTTTATGCCTACATTTCCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATG___TTCCAGCTGTGGTTATATTGTAAATGAAGCATCTAACATGTGCACAACTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTC TLNIDDETTKVVRNRCSSCGYIVNEASNMCTTCNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGCT|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27203 ENSG00000289722::MEIOB ENSG00000289722.1::ENSG00000162039.18 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4585 TRUE 1738 ENSG00000289722 ENSG00000289722.1 protein_coding - - chr16:1833987-1884294:- chr16:1837784:- chr16:1883988-1934295:- chr16:1887785:- MEIOB ENSG00000162039.18 protein_coding - - chr16:1833986-1872178:- chr16:1837870:- chr16:1883987-1922179:- chr16:1887871:- chr16:1835386 chr16:1844216 NA NA chr16:1885387 chr16:1894217 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none CDC24_OB3(100%),FAA_hydrolase(12%)|CDC24_OB3(1%),FAA_hydrolase(88%) 0 0 0 367 419 ENST00000470044.5 ENST00000325962.9 upstream downstream duplicates(1),hairpin(1) GAGACTTTGGGCTGCACG___GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAGAAGCAAAATTTATTTAAAA|GTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCATTAAAGTGGCAATTTCTCTTGGAAAG ETLGCTVHEFLAMTDEQKTALKWQFLLERSKIYLK|VHEFLAMTDEQKTALKWQFLLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27206 ENSG00000289517::CYB5R3 ENSG00000289517.1::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4586 TRUE 1739 ENSG00000289517 ENSG00000289517.1 protein_coding - - chr22:42583836-42627688:- chr22:42591955:- chr22:42979842-43023694:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42627688:- chr22:43011736-43116876:- chr22:43023694:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Oxidoreductase_NAD-binding_domain_(100%) NAD_binding_1(100%),RRM_1(45%),RRM_5(37%)|FAD_binding_6(29%),NAD_binding_1(78%) 1 4 2 393 1017 ENST00000617178.5 ENST00000692152.1 upstream downstream duplicates(2) GGCCCTCAAGCGAGCTCGACTGGTCCATCCTGGGGTAGCGGAGGTGGTGTTTGTGAAAAAGGACGATGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|GGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCATCAGGACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAG___GCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATG...TGCCAACCAG___ACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAG___CCTGGGACTACGGCCAGGGCTTCGTGAATGAGGAGATGATCCGGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27207 ENSG00000289517::CYB5R3 ENSG00000289517.1::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4586 TRUE 1739 ENSG00000289517 ENSG00000289517.1 protein_coding - - chr22:42583836-42627688:- chr22:42591955:- chr22:42979842-43023694:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42628281:- chr22:43011736-43116876:- chr22:43024287:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Oxidoreductase_FAD-binding_domain(37%),Oxidoreductase_NAD-binding_domain_(100%) NAD_binding_1(100%),RRM_1(45%),RRM_5(37%)|FAD_binding_6(34%),NAD_binding_1(82%) 0 1 2 393 1081 ENST00000617178.5 ENST00000692152.1 upstream downstream duplicates(2) TGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|GTTTACTTCAAGGACACCCATCCCAAGTTTCCCGCTGGAGGGAAGATGTCTCAGTACCTGGAGAGCATGCAGATTGGAGACACCATTGAGTTCCGGGGCCCCAGTGGGCTGCTGGTCTACCAGGGCAAAG___GGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCA...ACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAG___GCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATGAAGGACCCTGATGACCACACTGTGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27208 ENSG00000289517::CYB5R3 ENSG00000289517.1::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4586 TRUE 1739 ENSG00000289517 ENSG00000289517.1 protein_coding - - chr22:42583836-42627688:- chr22:42591955:- chr22:42979842-43023694:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42623888:- chr22:43011736-43116876:- chr22:43019894:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication medium none |Oxidoreductase_NAD-binding_domain_(67%) NAD_binding_1(100%),RRM_1(45%),RRM_5(37%)|FAD_binding_6(0%),NAD_binding_1(52%) 0 1 1 393 1226 ENST00000617178.5 ENST00000692152.1 upstream downstream duplicates(1) GCGAGCTCGACTGGTCCATCCTGGGGTAGCGGAGGTGGTGTTTGTGAAAAAGGACGATGCCATCACCGCATATAAGAAGTACAACAACCGGTGTCTGGACG|ACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAG___CCTGGGACTACGGCCAGGGCTTCGTGAATGAG...GGAGTGCAATGGCGCGATCTCGGCTCACCGCAACCTCCGCCTCCCGAGTTCAAGCGATTCTTCTGCCTCAGGCTCCTGAGTAGGTGGGATTTCAGGCCGTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27253 TET3::DGUOK ENSG00000187605.16::ENSG00000114956.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE TRUE 2505 TRUE 4592 TRUE 1740 TET3 ENSG00000187605.16 protein_coding + + chr2:73984910-74108176:+ chr2:74003166:+ chr2:74212037-74335303:+ chr2:74230293:+ DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73946719:+ chr2:74153953-74186088:+ chr2:74173846:+ chr2:74041630,chr2:74041628 chr2:73946591,chr2:73946586 NA NA chr2:74268757,chr2:74268755 chr2:74173718,chr2:74173713 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CXXC_zinc_finger_domain(100%)|Deoxynucleoside_kinase(80%) zf-CXXC(100%)|dNK(37%) 7 9 16 282 585 ENST00000409262.8 ENST00000348222.3 downstream upstream duplicates(4),mismatches(1) CCTCAGCGCCAGGTGATGGTAGGGAGCTTCCCGGGGTCTGGGCTCTCCATGGCTGGGAGTGAGTCCCAACTCCGAGGGGGTGGAGATGGTCGAAAGAAACGGAAACGGTGTGGTACTTGTGAGCCCTGCCGGCGGCTGGAAAACTGTGGCGCTTGCACTAGCTGTACCAACCGCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGAAAAAAGTAGGGCTTCTCAAGGAG___...CCTCCCTCCGTGCGCTCCCTCCGGCGGGGATAATGGGAGGCCCGCCGGCCGATGCACCAGAGGAGGCCGGCCGAG___GTGGAAATAAAGGCTGGTGAAGGAGCCGGGCCGTGGGGACAAGGAGCGGCTGTCAAG|GCCTGCACTGCCCAAAGTCTTGGAAACTTGCTGGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACATTCCAGACATTTTCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAGCCCTTCCCTGAGAAACTCTTACAGGCCAGGAAGCCAGTACAGATCTTTGAGAGGTCTGTGTACAGTGACAG___GCTCCACTTTGAGGCTCTGATGAACATTCCAG ppsvrslrrg*wearrpmhqrrpaeVEIKAGEGAGPWGQGAAVK|ACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRLHFEALMNIP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,CENTRAL_NERVOUS_SYSTEM no_match 74317174|74317174,74230293|74230293|74230293 FALSE|FALSE,TRUE|TRUE|TRUE 74184252|74185273,74173846|74185273|74184252 FALSE|FALSE,TRUE|FALSE|FALSE PARTIALLY,PARTIALLY In-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27254 TET3::DGUOK ENSG00000187605.16::ENSG00000114956.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4592 TRUE 1740 TET3 ENSG00000187605.16 protein_coding + + chr2:73984910-74108176:+ chr2:73986706:+ chr2:74212037-74335303:+ chr2:74213833:+ DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73946719:+ chr2:74153953-74186088:+ chr2:74173846:+ chr2:74041630,chr2:74041628 chr2:73946591,chr2:73946586 NA NA chr2:74268757,chr2:74268755 chr2:74173718,chr2:74173713 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none CXXC_zinc_finger_domain(100%)|Deoxynucleoside_kinase(80%) zf-CXXC(100%)|dNK(37%) 0 1 7 234 585 ENST00000409262.8 ENST00000264093.9 downstream upstream duplicates(1),mismatches(1) CCGGGGTCTGGGCTCTCCATGGCTGGGAGTGAGTCCCAACTCCGAGGGGGTGGAGATGGTCGAAAGAAACGGAAACGGTGTGGTACTTGTGAGCCCTGCCGGCGGCTGGAAAACTGTGGCGCTTGCACTAGCTGTACCAACCGCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGAAAAAAGTAGGGCTTCTCAAGGAG|GCCTGCACTGCCCAAAGTCTTGGAAACTTGCTGGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACATTCCAGACATTTTCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAGCCCTTCCCTGAGAAACTCTTACAGGCCAGGAAGCCAGTACAGATCTTTGAGAGGTCTGTGTACAGTGACAG___GTATATCTTTGCAAAGAATCTTTTTGAAAAT PGSGLSMAGSESQLRGGGDGRKKRKRCGTCEPCRRLENCGACTSCTNRRTHQICKLRKCEVLKKKVGLLKE|ACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,CENTRAL_NERVOUS_SYSTEM no_match 74317174|74317174,74230293|74230293|74230293 FALSE|FALSE,FALSE|FALSE|FALSE 74184252|74185273,74173846|74185273|74184252 FALSE|FALSE,TRUE|FALSE|FALSE PARTIALLY,PARTIALLY In-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27255 TET3::DGUOK ENSG00000187605.16::ENSG00000114956.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4592 TRUE 1740 TET3 ENSG00000187605.16 protein_coding + + chr2:73984910-74108176:+ chr2:74003166:+ chr2:74212037-74335303:+ chr2:74230293:+ DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73958146:+ chr2:74153953-74186088:+ chr2:74185273:+ chr2:74041630,chr2:74041628 chr2:73946591,chr2:73946586 NA NA chr2:74268757,chr2:74268755 chr2:74173718,chr2:74173713 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none CXXC_zinc_finger_domain(100%)|Deoxynucleoside_kinase(16%) zf-CXXC(100%)|dNK(1%) 1 2 1 282 668 ENST00000409262.8 ENST00000348222.3 downstream upstream none GCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGAAAAAAGTAGGGCTTCTCAAGGAG___GTGGAAATAAAGGCTGGTGAAGGAGCCGGGCCGTGGGGACAAGGAGCGGCTGTCAAG|GCTCCACTTTGAGGCTCTGATGAACATTCCAGTGCTGGTGTTGGATGTCAATGATGATTTTTCTGAGGAAGTAACCAAACAAGAAGACCTCATGAGAGAG___GTAAACACCTTTGTAAAGAATCTGTAACCAATACCATGAAGTTCAGGCTGTGATCTGGGCTCCCTGACTTTCTGAAGCTAGAAAAATGTTGTGTCTCCCAACCACCTTTCCATCCCCA RTHQICKLRKCEVLKKKVGLLKEVEIKAGEGAGPWGQGAAVK|apl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,CENTRAL_NERVOUS_SYSTEM no_match 74317174|74317174,74230293|74230293|74230293 FALSE|FALSE,TRUE|TRUE|TRUE 74184252|74185273,74173846|74185273|74184252 FALSE|TRUE,FALSE|TRUE|FALSE PARTIALLY,PARTIALLY In-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27256 TET3::DGUOK ENSG00000187605.16::ENSG00000114956.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4592 TRUE 1740 TET3 ENSG00000187605.16 protein_coding + + chr2:73984910-74108176:+ chr2:74003166:+ chr2:74212037-74335303:+ chr2:74230293:+ DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73957125:+ chr2:74153953-74186088:+ chr2:74184252:+ chr2:74041630,chr2:74041628 chr2:73946591,chr2:73946586 NA NA chr2:74268757,chr2:74268755 chr2:74173718,chr2:74173713 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none CXXC_zinc_finger_domain(100%)|Deoxynucleoside_kinase(33%) zf-CXXC(100%)|dNK(5%) 2 0 1 282 281 ENST00000409262.8 ENST00000264093.9 downstream upstream duplicates(2),mismatches(1) CCCAACTCCGAGGGGGTGGAGATGGTCGAAAGAAACGGAAACGGcGTGGTACTTGTGAGCCCTGCCGcCGGCcGGAAAcCcGTcGCGCTTGCACTAcCTG...GCCGCACGCACCAGATCTGCAAACTGCGAAAATGTGAGGTGCTGAAGAAAAAAGTAGGGCTTCTCAAGGAG___GTGGAAATAAAGGCTGGTGAAGGAGCCGGGCCGTGGGGACAAGGAGCGGCTGTCAAG|GTTTGTTTGAAGAGACTGTACCAGAGGGCCAGGGAGGAGGAGAAAGGAATTGAGCaGGC RTHQICKLRKCEVLKKKVGLLKEVEIKAGEGAGPWGQGAAVK|VCLKRLYQRAREEEKGIEq NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,CENTRAL_NERVOUS_SYSTEM no_match 74317174|74317174,74230293|74230293|74230293 FALSE|FALSE,TRUE|TRUE|TRUE 74184252|74185273,74173846|74185273|74184252 TRUE|FALSE,FALSE|FALSE|TRUE PARTIALLY,PARTIALLY In-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27257 ITGA1::ENSG00000288035 ENSG00000213949.10::ENSG00000288035.1 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ITGA1 ENSG00000213949.10 protein_coding + + chr5:52787916-52959209:+ chr5:52898383:+ chr5:52083750-52255039:+ chr5:52194213:+ ENSG00000288035 ENSG00000288035.1 lncRNA - + chr5:51438792-51665048:- chr5:51583146:+ chr5:50734626-50960882:- chr5:50878980:+ chr5:52901356,chr5:52901355 chr5:51538765,chr5:51538761 NA NA chr5:52197186,chr5:52197185 chr5:50834599,chr5:50834595 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none von_Willebrand_factor_type_A_domain(100%)| VWA(100%),VWA_2(100%),eRF1_1(100%),eRF1_2(100%),eRF1_3(100%)| 8 9 6 23 15 ENST00000282588.7 unknown downstream upstream duplicates(7) TCTAGTCACCATTGTTAAAACTCTGGGAGAAAGAATATTTGCCCTGGAAG___CCACAGCTGACCAGTCAGCAGCTTCATTTGAAATGGAAATGTCTCAGACTGGCTTCAGTGCTCATTATTCACAG___GACTGGGTCATGCTTGGAGCAGTAGGAGCCTATGATTGGAATGGAACAGTTGTCATGCAGAAGGCTAGTCAAATCATAATCCCTCGAAACACAACCTTTAATGTTGAGTCTACCAAAAAGAATGAACCGCTTGCTTCTTATTTAG|GGCATTCCCTAAGGAACGAATTGTAAATAACGCCATCCAAATTCCTGAGAACAAGATGCATGCCAGGTTTCTGCCAGGATAACAGTTGATGCCTAATTGAGCCTGGGATTGTTAAAATGTCTCCTTTTTATAGTCCTGAATAATGTAG LVTIVKTLGERIFALEATADQSAASFEMEMSQTGFSAHYSQDWVMLGAVGAYDWNGTVVMQKASQIIIPRNTTFNVESTKKNEPLASYL|ghslrnel* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27258 LRRC75A::ENSG00000269289 ENSG00000181350.12::ENSG00000269289.6 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC75A ENSG00000181350.12 protein_coding - - chr17:16441577-16492193:- chr17:16462258:- chr17:16344891-16395507:- chr17:16365572:- ENSG00000269289 ENSG00000269289.6 lncRNA - - chr19:23919081-23958035:- chr19:23920198:- chr19:24101883-24140837:- chr19:24103000:- chr17:16455874,chr17:16455879 chr19:23928524,chr19:23928526 NA NA chr17:16359188,chr17:16359193 chr19:24111326,chr19:24111328 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none none none 3 3 5 127 67 ENST00000470794.2 ENST00000596326.5 upstream downstream mismatches(1) GTCGGCATGGTCCAGGAGCTGCTGCGGATGGTGCGCCAGGGCCGGCGGGAGGAGGCGGGGACGCTGCTGCAGCACCTGCGCCAG___GACCTGGGCATGGAGTCGACCTCGCTAGACGACGTTCTGTATCGCTACGCCAGCTTCCGGAACCTGGTGGACCCCATCACACACGACCTCATCATCAGCCTGGCACGCTACATCCACTGTCCCAAGCCG|GCTTTCCAGAAACGGTTTCCTTTGGAATGCAGCTTTCCAAATCACTTTAAAGACTGGCTTTCTTCTTGACGTTGGACCTCTCATCCAGGTCATCTGTTGTATTCACTCTCACCTACCTGGGGGTTCATCCACCATCTCATCTCGCTTCATATTCCAGGGCTCTTTTTCTTTCTCCAGACAGATGATGAGGTCTGGCTTAGAGACAGCAATACCTGTTTTATTAAAAATAATTAACATGAATCTTGCTCATATTCTCCAATTACCAACTTAGTAATGTGCAAAGTAAA VGMVQELLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYIHCPKP|afqkrfplecsfpnhfkdwlss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27259 LRRC75A::ZNF726 ENSG00000181350.12::ENSG00000213967.12 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC75A ENSG00000181350.12 protein_coding - - chr17:16441577-16492193:- chr17:16462258:- chr17:16344891-16395507:- chr17:16365572:- ZNF726 ENSG00000213967.12 protein_coding + - chr19:23914876-23945159:+ chr19:23918066:- chr19:24097678-24127961:+ chr19:24100868:- chr17:16455874,chr17:16455879 chr19:23928524,chr19:23928526 NA NA chr17:16359188,chr17:16359193 chr19:24111326,chr19:24111328 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 2 6 1 127 15 ENST00000470794.2 unknown upstream downstream mismatches(1) CCACCGGCGAGTCGGCATGGTCCAGGAGCTGCTGCGGATGGTGCGCCAGGGCCGGCGGGAGGAGGCGGGGACGCTGCTGCAGCACCTGCGCCAG___GACCTGGGCATGGAGTCGACCTCGCTAGACGACGTTCTGTATCGCTACGCCAGCTTCCGGAACCTGGTGGACCCCATCACACACGACCTCATCATCAGCCTGGCACGCTACATCCACTGTCCCAAGCCG|GTATAACCGCATTCCTGCACTTTTCAAGTTAGCCAACCGGGTTTAGCCAACTGGATTGTGCCATCCAACTCCAGCCAATGGAGACAGGACACAGTAAGAAGGACAAGCTGCTTAGAG___ACAGCCCTGAAGATGAGTTTTCACCCCAGAGAACAGAATGACAGAAG...GTTGAAATGGCTG HRRVGMVQELLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRNLVDPITHDLIISLARYIHCPKP|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27261 ENSG00000290964::BMAL1 ENSG00000290964.1::ENSG00000133794.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000290964 ENSG00000290964.1 lncRNA - - chr13:63828840-63844125:- chr13:63839749:- chr13:64402973-64418258:- chr13:64413882:- BMAL1 ENSG00000133794.20 protein_coding + + chr11:13276652-13387266:+ chr11:13309987:+ chr11:13298199-13408813:+ chr11:13331534:+ chr13:63838350,chr13:63838352 chr11:13304517,chr11:13304515 NA NA chr13:64412483,chr13:64412485 chr11:13326064,chr11:13326062 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation high none |Helix-loop-helix_DNA-binding_domain(100%),PAS_domain(100%),PAS_fold(100%) |HLH(100%),PAS(100%),PAS_11(100%),PAS_3(100%),PAS_9(100%) 2 0 1 3 3 ENST00000607822.5 ENST00000401424.6 upstream upstream duplicates(1) CCCTTTGTGACCTCATACAAAGGCTTGGCTTATACTGCAAAGTTTGGGATCCACAGTCTACAAAACCCCACAGCTCCTGAGAATTCTCTCGCCTGCTTTCGACCCTTAGGCTCTGGTAGATTGCAAATAACCTGCTTTCTTTCTGTTCCCGGGCGGCGTGGGACCCC...CACCTAATACCCACAGTCCTCCAG|GTGGTGCTGGCTAGAGTGTATACGTTTGGACCCAAGCTTAACTTTTCCAATGTGGAATCCTGGGCCTTCATTG___GTTTTTGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27287 ZMYND8::CEP250 ENSG00000101040.20::ENSG00000126001.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2507 TRUE 4596 TRUE 1741 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47224317:- chr20:45837859-45985633:- chr20:45852970:- CEP250 ENSG00000126001.17 protein_coding + + chr20:35455164-35519280:+ chr20:35490637:+ chr20:34042985-34107108:+ chr20:34078463:+ chr20:47221457,chr20:47221457,chr20:47221459,chr20:47221465,chr20:47221459 chr20:35482205,chr20:35482210,chr20:35482203,chr20:35482203,chr20:35482205 NA NA chr20:45850108,chr20:45850108,chr20:45850110,chr20:45850116,chr20:45850110 chr20:34070030,chr20:34070035,chr20:34070028,chr20:34070028,chr20:34070030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman Bromodomain(100%),PHD-finger(100%),PWWP_domain(100%),Protein_kinase_C-binding_protein_1(100%)| Bromodomain(100%),DUF3544(100%),PHD(100%),PWWP(100%)| 142 70 274 834 322 ENST00000446994.6 ENST00000397527.6 upstream upstream duplicates(90),low_entropy(3),mismatches(24) TCCGAAATGAAACACAACTTAG___AGCTGACCATGGCGGAGATGCGGCAGAGCCTGGAGCAGGAGCGGGACCGGCTCATCGCCGAGGTGAAGAAGCAGCTGGAGTTGGAGAAGCAGCAGGCGGTGGATGAGACCAAGAAGAAGCAGTGGTGCGCCAACTGCAAGAAGGAGGCCATCTTTTACTGCTGTTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAG|GAGAAGGAGCGCTCCTGGCACCAGCAGGAGCTGGCAAAGGCTCTGGAGAGCTTAGAAAGGGAAAAAATGGAGCTGGAAATGAGGCTAAAGGAGCAGCAGACAGAAATGGAGGCCATCCAGGCCCAGAGGGAAGAAGAACGGACCCAGGCAGAGAGTGCCCTATGCCAG___ATGCAGCTGGAAACAGAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGACGCAGAAGGAGCTAGCAGATGCCAGCCAAC SEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQS|gegallapagagkgsgelrkgkngagneakgaadrngghpgpegrrtdpgrecpmpdaagnregesippgdtaadaegasrcqp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27288 ZMYND8::CEP250 ENSG00000101040.20::ENSG00000126001.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2508 TRUE 4596 TRUE 1741 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47224317:- chr20:45837859-45985633:- chr20:45852970:- CEP250 ENSG00000126001.17 protein_coding + + chr20:35455164-35519280:+ chr20:35491212:+ chr20:34042985-34107108:+ chr20:34079038:+ chr20:47221457,chr20:47221457,chr20:47221459,chr20:47221465,chr20:47221459 chr20:35482205,chr20:35482210,chr20:35482203,chr20:35482203,chr20:35482205 NA NA chr20:45850108,chr20:45850108,chr20:45850110,chr20:45850116,chr20:45850110 chr20:34070030,chr20:34070035,chr20:34070028,chr20:34070028,chr20:34070030 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman Bromodomain(100%),PHD-finger(100%),PWWP_domain(100%),Protein_kinase_C-binding_protein_1(100%)| Bromodomain(100%),DUF3544(100%),PHD(100%),PWWP(100%)| 18 11 87 834 715 ENST00000446994.6 ENST00000397527.6 upstream upstream duplicates(17),mismatches(11) CTTAG___AGCTGACCATGGCGGAGATGCGGCAGAGCCTGGAGCAGGAGCGGGACCGGCTCATCGCCGAGGTGAAGAAGCAGCTGGAGTTGGAGAAGCAGCAGGCGGTGGATGAGACCAAGAAGAAGCAGTGGTGCGCCAACTGCAAGAAGGAGGCCATCTTTTACTGCTGTTGGAACACCAGCTACTGTGACTACCCCTGCCAGCAAGCCCACTGGCCTGAGCACATGAAGTCCTGCACCCAGTCAG|ATGCAGCTGGAAACAGAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGACGCAGAAGGAGCTAGCAGATGCCAGCCAACAACTGGAACGACTGAGGCAGGACATGAAAGTCCAGAAATTAAAGGAGCAG___GAGACCACTGGGATACTACAGACCCAGCTCCAGGAGGCTCAACGGGAGCTGAAGGAGGCAGCCCGGCAGCACAGAGATGACCT LELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQS|daagnregesippgdtaadaegasrcqpttgtteaghespeikgagdhwdttdpapggstgaeggspaaqr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27291 ACACA::STAC2 ENSG00000278540.5::ENSG00000141750.7 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2510 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37122531:- chr17:35441927-35766927:- chr17:35479453:- STAC2 ENSG00000141750.7 protein_coding - - chr17:39210541-39225945:- chr17:39218173:- chr17:37366794-37382198:- chr17:37374426:- chr17:37122070,chr17:37122073 chr17:39220270,chr17:39220270 NA NA chr17:35478992,chr17:35478995 chr17:37376523,chr17:37376523 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Acetyl-CoA_carboxylase__central_region(100%),Biotin-requiring_enzyme(100%),Biotin_carboxylase_C-terminal_domain(100%),Biotin_carboxylase__N-terminal_domain(100%),Carbamoyl-phosphate_synthase_L_chain__ATP_binding_domain(100%),Carboxyl_transferase_domain(61%)|Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Unstructured_on_SH3_and_cysteine-rich_domain-containing_protein_2(100%),Variant_SH3_domain(100%) ACC_central(100%),ATP-grasp(100%),Biotin_carb_C(100%),Biotin_carb_N(100%),Biotin_lipoyl(100%),CPSase_L_D2(100%),Carboxyl_trans(60%),DUF4711(100%),Dala_Dala_lig_C(100%)|C1_1(100%),SH3_1(100%),SH3_2(100%),SH3_9(100%),STAC2_u1(100%) 140 155 112 2077 280 ENST00000616317.5 ENST00000333461.6 upstream downstream duplicates(74),inconsistently_clipped(4),low_entropy(3),mismatches(25),multimappers(6) TTTCTCAGAGATTATGCAGCCCTGGGCACAGACTGTGGTGGTTGGTAGAGCCAG___GCTAGGAGGAATACCTGTGGGAGTTGTTGCTGTAGAAACCCGAACAGTAGAACTAAGTATCCCAGCTGATCCAGCAAACCTGGATTCTGAAGCCAAG|CTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGACCATCCTCCGAAGTAAGAGCTTGGAGAACTTCTTCCTTCGCTCGGGCTCTGAGCTCAAGTGCCCCACCGAGGTGCTGCTGACGCCCCCAACCCCACTGCCCCCTCCCTCCCCACCACCCACAGCCTCGGACAGGGGCCTGGCTACCCCATCCCC FSEIMQPWAQTVVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAK|LQRFKRSLSLKTILRSKSLENFFLRSGSELKCPTEVLLTPPTPLPPPSPPPTASDRGLATPS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27292 STX16::RAE1 ENSG00000124222.23::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4598 TRUE 1742 STX16 ENSG00000124222.23 protein_coding + + chr20:58651272-58679526:+ chr20:58659634:+ chr20:57226328-57254582:+ chr20:57234690:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high Mitelman |WD_domain__G-beta_repeat(100%) |WD40(100%) 36 48 133 53 3939 ENST00000355957.9 ENST00000371242.6 downstream upstream duplicates(26),mismatches(25) ATCTTTTTGGCTTGAGGCCTGAGG...TCGAGAAGCTTCCGTGAAAGGGTGGGCCAGCCGGGCCACGAGAAAGAAAG...GAATAAATCAGG...GTGAGACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAA___GAGCTGGACGAG|GTTCAAAATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAGACAATCACAATCCCATGAAG___GATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCATGGGCTAATGAT___GTTCGCTGCTGGGAAGTTCAAGACAGTGGACAGACCATTCCAAAAGCCCAGCAGATGCACACTGGGCCTGTGCTTGATGTCTG MATRRLTDAFLLLRNNSIQNRQLLAEQELDE|vqnepvwnnlrfwnqwdqhvwqcnyrqsqshegy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27293 STX16::RAE1 ENSG00000124222.23::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4598 TRUE 1742 STX16 ENSG00000124222.23 protein_coding + + chr20:58651272-58679526:+ chr20:58652087:+ chr20:57226328-57254582:+ chr20:57227143:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high Mitelman |WD_domain__G-beta_repeat(100%) |WD40(100%) 24 36 97 1796 3939 ENST00000355957.9 ENST00000371242.6 downstream upstream duplicates(24),mismatches(19) CGGCAGCCTGCTGGCAGTGGAGGACCAGGCCGTCCAGGAAAGGAAGGG___...GCTGCATCTTTTTGGCTT...AGGCCTGAGGCCTTGTCGAGAAGCTTCCGTGAAAGGG...GGGCCAGCCGGGCCACGAGAAAGAAAGTGAATAAATCAGGAATATAAGTGGGCGGGGGGCCCCTGAGAGGGGGGTCGCAAAGGGTGAGACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAA|GTTCAAAATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAGACAATCACAATCCCATGAAG___GATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCATGGGCTAATGAT___GTTCGCTGCTGGGAAGTTCAAGACAGTGGACAGACCATTCCAAAAGCCCAGCAGATGCACACTGGGCCTGTGCTTGATGTCTG MATRRLTDAFLLLRNNSIQNRQLLAEQ|vqnepvwnnlrfwnqwdqhvwqcnyrqsqshegy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27294 STX16::RAE1 ENSG00000124222.23::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4598 TRUE 1742 STX16 ENSG00000124222.23 protein_coding + + chr20:58651272-58679526:+ chr20:58652138:+ chr20:57226328-57254582:+ chr20:57227194:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high Mitelman |WD_domain__G-beta_repeat(100%) |WD40(100%) 2 7 107 521 3939 ENST00000371141.8 ENST00000371242.6 downstream upstream duplicates(14),mismatches(9) GGAGGACCAGGCCGTCCAGGAAAGGAAGGG___...CTGAGGCCTTGTCGAGAAGCTTCCGTGAAAGGGTGGGCCAGCCGGGCCACGAGAAAGAAAGTGAATAAATCAGGAATATAAGTGGGCGGGGGGCCCCTGAGAGGGGGGTCGCAAAGGGTGAGACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAAGTGAGTAGTCACATCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCG|GTTCAAAATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAGACAATCACAATCCCATGAAG___GATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCA MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAA|vqnepvwnnlrfwnqwdqhvwqcnyrqsqshegy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27295 TOB1::SYNRG ENSG00000141232.5::ENSG00000275066.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2511 FALSE NA FALSE NA TOB1 ENSG00000141232.5 protein_coding - - chr17:50862223-50867978:- chr17:50866058:- chr17:48939584-48945339:- chr17:48943419:- SYNRG ENSG00000275066.5 protein_coding - - chr17:37514807-37609472:- chr17:37520648:- chr17:35874910-35969520:- chr17:35880751:- chr17:50864015,chr17:50864017 chr17:37525309,chr17:37525308 NA NA chr17:48941376,chr17:48941378 chr17:35885412,chr17:35885411 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none none none 21 130 25 613 839 ENST00000499247.3 ENST00000621136.4 upstream downstream duplicates(27),mismatches(60) CTGTCCTCTGTCCTCAGCCCCGCAGCGGCAACGTCTTGCACTCGGCGAGCTCGCCGCTCCCGACCCTCCCGCGCCCCCGCCCTGCCGCGCTGCTCCCCGCCCAGCCGCGGGTCTGTGGTCCAAGCCGCCCCGAAGCAGCCC|CCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCCTGGGATTAAAAATGCTCAGGAGCTTGCCTGTGGAGTGTGCCTCTTGAATGTGGACTCGAGGAGCCGG___GCATTCAACTCAGAAACAGACAGTTTCAAGCTGGCCTATGGAGGGCACCAGTATCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTCGAACCAAAGCCTCCTGGCCTCGTCCTGCCTGACCTGCTCTGAACAACTCCTCTGTGAAGCATTGACTTTTTTTTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27296 STX16-NPEPL1::RAE1 ENSG00000254995.4::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4599 TRUE 1743 STX16-NPEPL1 ENSG00000254995.4 protein_coding + + chr20:58651434-58715410:+ chr20:58659634:+ chr20:57226490-57290466:+ chr20:57234690:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |WD_domain__G-beta_repeat(100%) |WD40(100%) 28 42 96 53 3939 ENST00000530122.1 ENST00000371242.6 downstream upstream duplicates(16),mismatches(23) CCGGGCCACGAGAAAGAAAGTGAATAAATCAGGAATATAAGTGGGCGGGGGGCCCCTGAGAGGGGGGTCGCAAAGGGTGAGACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAA___GAGCTGGACGAG|GTTCAAAATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAGACAATCACAATCCCATGAAG___GATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGATCATGGGCTAATGAT___GTTCGCTGCTGGGAAGTTCAAGACAGTGGACAGACCATTCCAAAAGCCCAGCAGATGCACACTGGGCCTGTGCTTGATGTCTGCTGGAG MATRRLTDAFLLLRNNSIQNRQLLAEQELDE|vqnepvwnnlrfwnqwdqhvwqcnyrqsqshegy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27297 STX16-NPEPL1::RAE1 ENSG00000254995.4::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4599 TRUE 1743 STX16-NPEPL1 ENSG00000254995.4 protein_coding + + chr20:58651434-58715410:+ chr20:58652138:+ chr20:57226490-57290466:+ chr20:57227194:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication high none |WD_domain__G-beta_repeat(100%) |WD40(100%) 1 6 71 521 3939 ENST00000530122.1 ENST00000371242.6 downstream upstream duplicates(7),mismatches(7) TCTTTTTGGCTTGAGGCCTGAGGCCTTGTCGAGAAGCTTCCGTGAAAGGGTGGGCCAGCCGGGCCACGAGAAAGAAAGTGAATAAATCAGGAATATAAGTGGGCGGGGGGCCCCTGAGAGGGGGGTCGCAAAGGGTGAGACATGGCCACCAGGCGTTTAACCGACGCTTTCTTGTTGTTGCGGAATAATTCCATCCAAAACCGGCAGCTGTTAGCCGAGCAAGTGAGTAGTCACATCACCTCCAGCCCTCTGCATTCACGTAGCATTGCTGCG|GTTCAAAATGAGCCTGTTTGGAACAACCTCAGGTTTTGGAACCAGTGGGACCAGCATGTTTGGCAGTGCAACTACAGACAATCACAATCCCATGAAG___GATATTGAAGTAACATCATCTCCTGATGATAGCATTGGTTGTCTGTCTTTTAGCCCACCAACCTTGCCGGGGAACTTTCTTATTGCAGGA MATRRLTDAFLLLRNNSIQNRQLLAEQVSSHITSSPLHSRSIAA|vqnepvwnnlrfwnqwdqhvwqcnyrqsqshegy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27298 MED1::ACSF2 ENSG00000125686.12::ENSG00000167107.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- ACSF2 ENSG00000167107.13 protein_coding + + chr17:50426158-50474845:+ chr17:50471028:+ chr17:48503519-48552206:+ chr17:48548389:+ chr17:39438591,chr17:39438713,chr17:39438717,chr17:39438732 chr17:50468384,chr17:50468384,chr17:50468380,chr17:50468366 NA NA chr17:37594844,chr17:37594966,chr17:37594970,chr17:37594985 chr17:48545745,chr17:48545745,chr17:48545741,chr17:48545727 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Mediator_of_RNA_polymerase_II_transcription_subunit_1(22%)|AMP-binding_enzyme(25%),AMP-binding_enzyme_C-terminal_domain(100%) Med1(18%)|AMP-binding(20%),AMP-binding_C(100%) 67 18 31 1634 1138 ENST00000394287.7 ENST00000507769.1 upstream upstream duplicates(28),low_entropy(3),mismatches(10) ATGAGTTCTGGAGGGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGG___ACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTG___AGCTGTCCGGAGCTTGTACAGCAGCTAAG|GTTGCTTATGGAACCACAGAGAACAGTCCCGTGACATTCGCGCACTTCCCTGAGGACACTGTGGAGCAGAAGGCAGAAAGCGTGGGCAGAATTATGCCTCACACGGAGGTGAGCCCCTGACCAAGACTCCAAAGTCCCACCTCCCGTCACCCAGCTGGGGTGCACCCAGCTGGGACATCGGTTGCTTTCAGTGAGAGAGTCAAATGGCTCAC MSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLr|llmepqrtvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27302 RAB22A::MYO9B ENSG00000124209.4::ENSG00000099331.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2515 FALSE NA FALSE NA RAB22A ENSG00000124209.4 protein_coding + + chr20:58309715-58367507:+ chr20:58311122:+ chr20:56884771-56942563:+ chr20:56886178:+ MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17145397:+ chr19:17186587-17325346:+ chr19:17256207:+ chr20:58315256,chr20:58315256 chr19:17106285,chr19:17106282 NA NA chr20:56890312,chr20:56890312 chr19:17217095,chr19:17217092 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high Mitelman Ras_family(20%)|IQ_calmodulin-binding_motif(100%),Myosin_head_(motor_domain)(80%),RhoGAP_domain(100%) Arf(2%),Gtr1_RagA(2%),MMR_HSR1(2%),Ras(2%),Roc(2%)|IQ(100%),Myosin_head(45%),RhoGAP(100%) 15 65 24 2412 180 ENST00000244040.4 ENST00000595618.5 downstream upstream duplicates(16),mismatches(10) GGGCCCGCGCCCCTGGCTCCCGGGCCATGGCGCTGAGGGAGCTCAAAGTGTGTCTGCTCGGG___GATACAGGTGTAGGTAAATCGAGTATTGTGTGGCGGTTTGTGGAAGACAGTTTTGATCCAAACATCAACCCAACAATAGG|GCTTTTGGAAATGCCAAGACAGCCCACAACAACAACTCCAGCCGGTTTGGGAAATTCATCCAAGTCAGCTACCTAGAGAGTGGCATCGTGAGAGG___AGCTGTCGTCGAGAAATATCTGCTTGAAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAG___GAACTACCATGTGTTTTATTATTTGTTACTTGGGGTCAGCGAGGAAGAGCGCCAAGAATTTCAGCTCAAGCAGCC MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIg|llemprqpttttpaglgnssksat* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27303 MED1::STXBP4 ENSG00000125686.12::ENSG00000166263.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2516 FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39451038:- chr17:37560538-37607525:- chr17:37607291:- STXBP4 ENSG00000166263.13 protein_coding + + chr17:54968727-55173632:+ chr17:55141310:+ chr17:53046088-53250993:+ chr17:53218671:+ chr17:39448897,chr17:39448899 chr17:55119469,chr17:55119467 NA NA chr17:37605150,chr17:37605152 chr17:53196830,chr17:53196828 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none |WW_domain(100%) |WW(100%) 39 37 28 2033 224 ENST00000394287.7 ENST00000376352.6 upstream upstream duplicates(18),mismatches(16) ATGGCGGCGGCCTCGAGCACCCTTCTCTTCTTGCCGCCGGGGACTTCAGATTGATCCTTCCCGGGAAGAGTAGGGACTGCTGGTGCCCTGCGTCCCGGGATCCCGAGCCAACTTGTTTCCTCCGTTAGTGGTGGGGAAGGGCTTATCCTTTTGTGGCGGATCTAGCTTCTCCTCGCCTTCAGGATGAAAGCTCAGGGGGAAACCGAGG|GTTTACCTTATGGGTGGGAGGAAGCTTACACAGCAGATGGAATCAAGTACTTCATCAA___TCATGTAACACAGACTACATCCTGGATCCATCCCGTGATGAGTGTCCTGAATCTATCTCGCTCAGAGGAGAATGAAGAGGATTGCTCTAGAGAACTCCCCAACCAGAAAAGTTGATGGTTTTCCTTAGGAAGTGGAGCTACATGGATGATGTGAGCAGAGAC MKAQGETE|gLPYGWEEAYTADGIKYFINHVTQTTSWIHPVMSVLNLSRSEENEEDCSRELPNQKS* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27304 STARD3::DOK5 ENSG00000131748.16::ENSG00000101134.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2517 FALSE NA FALSE NA STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39637231:+ chr17:37793343-37820454:+ chr17:37793484:+ DOK5 ENSG00000101134.12 protein_coding + + chr20:54475593-54651169:+ chr20:54643458:+ chr20:53092132-53267708:+ chr20:53259997:+ chr17:39642423,chr17:39642424 chr20:54632762,chr20:54632760 NA NA chr17:37798676,chr17:37798677 chr20:53249301,chr20:53249299 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none none none 4 83 10 4642 136 ENST00000578232.5 ENST00000262593.10 downstream upstream duplicates(11),mismatches(5) GCGCTGCCGGAAGATCTTCTTCCGCTCTGAGGCGCTACTGAGGCCGCGGAGCCGGACTGCGGTTGGGGCGGGAAGAGCCGGGGCCGTGGCTGACATGGAGCAG|CTCCAGATGAAGATGAGTGAGCGGGCCGCCTCGCTGAGCACCATGGTGCCCCTGCCTCGCAGCGCCTACTGGCAGCACATCACACGGCAGCACAGCACGGGACAGCTCTACCGCTTGCAAG___ATGTTTCCAGCCCTCTGAAGCTTCATCGAACAGAGACTTTTCCAGCCTACAGATCTGAGCACTGACAGTAACTGCCAAGAATTGTTAACACACTTGTGATGTGTCAGCCACAGATTCACCCAGGAGGTCACAGAATGACAGCAAGGGAAATGACGACCAAGAGAAGAAGCTTAAAGTCCTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27305 GLB1::CMTM7 ENSG00000170266.16::ENSG00000153551.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2518 FALSE NA FALSE NA GLB1 ENSG00000170266.16 protein_coding - - chr3:32996609-33097202:- chr3:33014056:- chr3:33038101-33138694:- chr3:33055548:- CMTM7 ENSG00000153551.14 protein_coding + + chr3:32391698-32483067:+ chr3:32441840:+ chr3:32433190-32524559:+ chr3:32483332:+ chr3:33006257,chr3:33006249,chr3:33006239,chr3:33006233,chr3:33006202,chr3:33006195 chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776 NA NA chr3:33047749,chr3:33047741,chr3:33047731,chr3:33047725,chr3:33047694,chr3:33047687 chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Beta-galactosidase_jelly_roll_domain(43%),Glycosyl_hydrolases_family_35(100%)|Membrane-associating_domain(89%) BetaGal_dom4_5(0%),Glyco_hydro_35(100%),Glyco_hydro_42(100%),Metallophos(100%)|MARVEL(17%) 19 41 35 143 75 ENST00000307363.10 ENST00000334983.10 upstream upstream duplicates(9),mismatches(6) CTGACTCTCAGTTCCAATATCCTCACGGACTGGACGATCTTTCCACTGGACACTGAGGATGCAGTGcGCAGCCACCTGGGGGGCTGGGGACACCGTGACAGTGGCCACCATGATGAAGCCTGGGCCCACAACTCATCCAACTACACGCTCCCGGCCTTTTATATGGGGAACTTCTCCATTCCCAGTGGGATCCCAGACTTGCCCCAGGACACCTTTATCCAGTTTCCTGGATGGACCAAG|GTCACCCTGCTGATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAACTACAGCGCCTACAGCTACTTTGAAGTGGTCACCATTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCACCTCTTCCGCTTCTACCGCGTGCTCACCTGTATCAGCTGGCCCCTGTCG___GAACTTCTGCACTATTTAATCGGTACCCTGCTCCTCCTCATCGCCTCCATTGTGGCAGCTTCCAAG LTLSSNILTDWTIFPLDTEDAVrSHLGGWGHRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTK|VTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAAS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27306 AHCTF1::NAAA ENSG00000153207.16::ENSG00000138744.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2519 TRUE 4601 TRUE 1744 AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246931578:- chr1:247002400-247095250:- chr1:247094880:- NAAA ENSG00000138744.16 protein_coding - - chr4:75913660-75941013:- chr4:75925811:- chr4:76834813-76862166:- chr4:76846964:- chr1:246923305,chr1:246923305,chr1:246922873,chr1:246923307,chr1:246923307 chr4:75926307,chr4:75926306,chr4:75926306,chr4:75926305,chr4:75926306 NA NA chr1:247086607,chr1:247086607,chr1:247086175,chr1:247086609,chr1:247086609 chr4:76847460,chr4:76847459,chr4:76847459,chr4:76847458,chr4:76847459 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Linear_amide_C-N_hydrolases__choloylglycine_hydrolase_family(59%) |CBAH(35%) 25 38 31 218 520 ENST00000648844.2 ENST00000286733.9 upstream downstream duplicates(10),low_entropy(2),mismatches(13) CCGGGCGGAGGGGTGTGAGCCCGGCCCGTGGCGGCCACGTCTCCCGGGAGATGCTGTGACGGACCCGCACGGGAGGAGCTCGCGCCTGGCCTGGCGACCCGGTGGACTCGGCCCGCGGCGGCGCGCTCACCCGCCCCGTTCAG|ATAAAGGCTGGTGGTGGGAGAATGCTATCGCTGCCCTGTTTCGGAGACACATTCCCGTCAGCTGGCTGATCCGCGCT___ACCCTGAGTGAGTCGGAAAACTTCGAAGCAGCTGTTGGCAAGTTGGCCAAGACTCCCCTTATTGCTGATGTTTATTACATTGTTGGTGGCACGTCCCCCCGGGAGGGGGTGGTCATCACGAGGAACAGAGATGGCCCAGCAGACATTTGGCCTCTAGATCCTTTGAATGGAGC___GTGGTTCCGAGTTGAGACAAATTACGACCACTGGAAGCCAGCACCCAAGGAAGATGACCGGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27307 AHCTF1::NAAA ENSG00000153207.16::ENSG00000138744.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4601 TRUE 1744 AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246931129:- chr1:247002400-247095250:- chr1:247094431:- NAAA ENSG00000138744.16 protein_coding - - chr4:75913660-75941013:- chr4:75925811:- chr4:76834813-76862166:- chr4:76846964:- chr1:246923305,chr1:246923305,chr1:246922873,chr1:246923307,chr1:246923307 chr4:75926307,chr4:75926306,chr4:75926306,chr4:75926305,chr4:75926306 NA NA chr1:247086607,chr1:247086607,chr1:247086175,chr1:247086609,chr1:247086609 chr4:76847460,chr4:76847459,chr4:76847459,chr4:76847458,chr4:76847459 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none |Linear_amide_C-N_hydrolases__choloylglycine_hydrolase_family(59%) |CBAH(35%) 2 2 46 30 520 ENST00000366508.5 ENST00000286733.9 upstream downstream duplicates(11),mismatches(20) CGGCACATGGCGGCGGAGCGGCGCTGGTGGTTCGCGTCCTGCGCCGGCAGTCGGGTCCCTTTACGGACGGCCGGGGCCGCGACCCTTTCCCACTGTTCTCCCACGCGATGGACTCGTTGGCGGGCCTTTCCCCGAGGGAAGCGGCCGGCGTGCTGAGCCTGTCCTGTGTTGGCGTGTGTTCCACATGCGCTTGGGCCTGGCCACA|ATAAAGGCTGGTGGTGGGAGAATGCTATCGCTGCCCTGTTTCGGAGACACATTCCCGTCAGCTGGCTGATCCGCGCT___ACCCTGAGTGAGTCGGAAAACTTCGAAGCAGCTGTTGGCAAGTTGGCCAAGACTCCCCTTATTGCTGATGTTTATTACATTGTTG MDSLAGLSPREAAGVLSLSCVGVCSTCAWAWPq|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27308 AHCTF1::NAAA ENSG00000153207.16::ENSG00000138744.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2520 TRUE 4601 TRUE 1744 AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246931578:- chr1:247002400-247095250:- chr1:247094880:- NAAA ENSG00000138744.16 protein_coding - - chr4:75913660-75941013:- chr4:75921123:- chr4:76834813-76862166:- chr4:76842276:- chr1:246923305,chr1:246923305,chr1:246922873,chr1:246923307,chr1:246923307 chr4:75926307,chr4:75926306,chr4:75926306,chr4:75926305,chr4:75926306 NA NA chr1:247086607,chr1:247086607,chr1:247086175,chr1:247086609,chr1:247086609 chr4:76847460,chr4:76847459,chr4:76847459,chr4:76847458,chr4:76847459 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site translocation high none |Linear_amide_C-N_hydrolases__choloylglycine_hydrolase_family(44%) |CBAH(7%) 4 4 14 218 659 ENST00000648844.2 ENST00000286733.9 upstream downstream duplicates(1),mismatches(3) CGGCTTCAGCCGGGCGGAGGGGTGTGAGCCCGGCCCGTGGCGGCCACGTCTCCCGGGAGATGCTGTGACGGACCCGCACGGGAGGAGCTCGCGCCTGGCCTGGCGACCCGGTGGACTCGGCCCGCGGCGGCGCGCTCACCCGCCCCGTTCAG|ACCCTGAGTGAGTCGGAAAACTTCGAAGCAGCTGTTGGCAAGTTGGCCAAGACTCCCCTTATTGCTGATGTTTATTACATTGTTGGTGGCACGTCCCCCCGGGAGGGGGTGGTCATCACGAGGAACAGAGATGGCCCAGCAGACATTTGGCCTCTAGATCCTTTGAATGGAGC___GTGGTTCCGAGTTGAGACAAATTACGACCACTGGAAGCCAGCACCCAAGGAAGATGACCGGAG___AACATCTGCCATCAAGGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27309 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2521 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman MSP_(Major_sperm_protein)_domain(10%)| Motile_Sperm(0%)| 23 20 23 2314 73 ENST00000475243.6 ENST00000346872.8 downstream downstream duplicates(11),mismatches(10) GCGCCTGCACCGCGTAGACCGACCCCCCCCCAGCGCGCCCACCCGGTAGAGGACCCCCGCCCGTGCCCCGACCGGTCCCCGCCTTTTTGTAAAACTTAAAGCGGGCGCAGCATTAACGCTTCCCGCCCCGGTGACCTCTCAGGGGTCTCCCCGCCAAAGGTGCTCCGCCGCTAAGGAACATGGCGAAGGTGGAGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAG|CAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAA MAKVEQVLSLEPQHELKFR|aSAEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 27310 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2522 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39766493:- chr17:37913971-38020565:- chr17:37922746:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman MSP_(Major_sperm_protein)_domain(10%)| Motile_Sperm(0%)| 10 17 9 2314 165 ENST00000475243.6 ENST00000346872.8 downstream downstream duplicates(6),mismatches(5) CCCCCAGCGCGCCCACCCGGTAGAGGACCCCCGCCCGTGCCCCGACCGGTCCCCGCCTTTTTGTAAAACTTAAAGCGGGCGCAGCATTAACGCTTCCCGCCCCGGTGACCTCTCAGGGGTCTCCCCGCCAAAGGTGCTCCGCCGCTAAGGAACATGGCGAAGGTGGAGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAG|GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCATGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAA MAKVEQVLSLEPQHELKFR|gEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMSNGAPQEL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 27311 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2523 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39788374:- chr17:37913971-38020565:- chr17:37944627:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high Mitelman MSP_(Major_sperm_protein)_domain(10%)|Zinc_finger__C2H2_type(46%) Motile_Sperm(0%)|zf-C2H2(63%),zf-C2HC_2(100%) 3 6 25 2314 15 ENST00000475243.6 ENST00000346872.8 downstream downstream duplicates(5),mismatches(9) CTGCGCCTGCACCGCGTAGACCGACCCCCCCCCAGCGCGCCCACCCGGTAGAGGACCCCCGCCCGTGCCCCGACCGGTCCCCGCCTTTTTGTAAAACTTAAAGCGGGCGCAGCATTAACGCTTCCCGCCCCGGTGACCTCTCAGGGGTCTCCCCGCCAAAGGTGCTCCGCCGCTAAGGAACATGGCGAAGGTGGAGCAGGTCCTGAGCCTCGAGCCGCAGCACGAGCTCAAATTCCGAG|TGGAGAAACCCTACAAATGTGAGTTTTGTGGAAGGAGTTACAAGCAGAGAAGTTCCCTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGAGCACTGACCCAGGGGACACTG___CAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTG___GTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGT MAKVEQVLSLEPQHELKFR|vEKPYKCEFCGRSYKQRSSLEEHKERCRTFLQSTDPGDTASAEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNS NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 27312 ZC3H11A::CNOT6L ENSG00000058673.17::ENSG00000138767.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZC3H11A ENSG00000058673.17 protein_coding + + chr1:203795623-203854999:+ chr1:203840374:+ chr1:203764751-203824127:+ chr1:203809502:+ CNOT6L ENSG00000138767.14 protein_coding - + chr4:77713387-77819615:- chr4:77748249:+ chr4:78634541-78740769:- chr4:78669403:+ chr1:203841651 chr4:77747442 NA NA chr1:203810779 chr4:78668596 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none Zinc-finger_containing_family(100%)| Dimer_Tnp_hAT(100%),zf-BED(100%),zf-CCCH_2(100%),zf-CCCH_3(100%)| 23 10 22 1055 46 ENST00000639812.1 unknown downstream upstream duplicates(5),mismatches(4) AGGTCCTGAAAAAGAAAATGTCAGGACTGTGGTGAGGACAGTAACTCTCTCCACCAAACAAG___GAGAAGAACCCTTGGTTAGATTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGCAG___GCGGTGACAGTGATCCTCCATTAAAGCGTAGCCTGGCACAGAGGCTAGGGAAGAAAGTTGAAGCTCCAGAAACTAACATTGACAAAACACCAAAGAAAG___CTCAAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCTGATCCAGATAATGAGGATGCAACAG|ATCATGAAGCCCAAATAACATTTTAAGAATTTCTGAAAAAAAAGGAAGAATAAGAAAAACTATTTACCTGACGGCAGAATTTGGTCTCGTTCTTTTAATGTAATCCATGGCCTCGGAGGAAGCTGCTCTGGATGAACTGAAAAAAATTTTGTAAATATAGGTTAATTTCATGTGTTTCTGAAATCTGAAATGTGTTTATAATGTCAAAAACACTTCTGTTTTCTATTCTGCTGTAACGGC GPEKENVRTVVRTVTLSTKQGEEPLVRLSLTERLGKRKFSAGGDSDPPLKRSLAQRLGKKVEAPETNIDKTPKKAQVSKSLKERLGMSADPDNEDAT|dheaqitf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27313 ZBED6::CNOT6L ENSG00000257315.4::ENSG00000138767.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZBED6 ENSG00000257315.4 protein_coding + + chr1:203795623-203854124:+ chr1:203840374:+ chr1:203764751-203823252:+ chr1:203809502:+ CNOT6L ENSG00000138767.14 protein_coding - + chr4:77713387-77819615:- chr4:77748249:+ chr4:78634541-78740769:- chr4:78669403:+ chr1:203841651 chr4:77747442 NA NA chr1:203810779 chr4:78668596 NA NA sense antisense unknown 3'UTR/splice-site intron translocation/5'-5' high none BED_zinc_finger(100%),hAT_family_C-terminal_dimerisation_region(100%)| Dimer_Tnp_hAT(100%),zf-BED(100%),zf-CCCH_2(100%),zf-CCCH_3(100%)| 23 10 22 1055 46 ENST00000550078.3 unknown downstream upstream duplicates(5),mismatches(4) AGGTCCTGAAAAAGAAAATGTCAGGACTGTGGTGAGGACAGTAACTCTCTCCACCAAACAAG___GAGAAGAACCCTTGGTTAGATTGAGTCTTACTGAGAGACTGGGGAAACGAAAATTTTCAGCAG___GCGGTGACAGTGATCCTCCATTAAAGCGTAGCCTGGCACAGAGGCTAGGGAAGAAAGTTGAAGCTCCAGAAACTAACATTGACAAAACACCAAAGAAAG___CTCAAGTTTCCAAGTCTCTTAAGGAGCGATTAGGCATGTCAGCTGATCCAGATAATGAGGATGCAACAG|ATCATGAAGCCCAAATAACATTTTAAGAATTTCTGAAAAAAAAGGAAGAATAAGAAAAACTATTTACCTGACGGCAGAATTTGGTCTCGTTCTTTTAATGTAATCCATGGCCTCGGAGGAAGCTGCTCTGGATGAACTGAAAAAAATTTTGTAAATATAGGTTAATTTCATGTGTTTCTGAAATCTGAAATGTGTTTATAATGTCAAAAACACTTCTGTTTTCTATTCTGCTGTAACGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27314 ASTN2::ENSG00000231901 ENSG00000148219.18::ENSG00000231901.1 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4603 TRUE 1746 ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291326:- chr9:119185391-120177348:- chr9:120053605:- ENSG00000231901 ENSG00000231901.1 lncRNA - - chr9:117840322-117897256:- chr9:117870227:- chr9:120602600-120659534:- chr9:120632505:- chr9:117285838,chr9:117285844 chr9:117881659,chr9:117881662 NA NA chr9:120048117,chr9:120048123 chr9:120643937,chr9:120643940 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none ASTN_1_2_N(20%)| 12 19 19 58 35 ENST00000313400.9 ENST00000449730.1 upstream downstream duplicates(8),mismappers(1),mismatches(1) CGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCCTGG___AGATGTCTGGCACAGCgGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAGATTGTTGAGGAGCAGATGCACATCCTCCACATTTCTGTGATG|ATGCTTCGAAGGAAAATAAAGAAAACCAACAAAGACAATAAGCTGCTCCTTCTTCATTTAGCCCATCTCACTGTTGACTTCTCCAGAGAAGACGCTGTAACAGAGTTTGAAGAACAAGATCTTTCTTGGAAATCAACACCTGTGAAAGCAAGAGGGTATAAGCAGAATTGTGCAGAGGAAGAAG___GAAGAACATGGAGCTGCTCTCCCTGAAGTGAAAGATGGGACCCGGAGCCCTTAACC ELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHISVM|mlrrkikktnkdnkllllhlahltvdfsredavtefeeqdlswkstpvkargykqncaeeegrtwscsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27315 ASTN2::ENSG00000231901 ENSG00000148219.18::ENSG00000231901.1 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4603 TRUE 1746 ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291326:- chr9:119185391-120177348:- chr9:120053605:- ENSG00000231901 ENSG00000231901.1 lncRNA - - chr9:117840322-117897256:- chr9:117875036:- chr9:120602600-120659534:- chr9:120637314:- chr9:117285838,chr9:117285844 chr9:117881659,chr9:117881662 NA NA chr9:120048117,chr9:120048123 chr9:120643937,chr9:120643940 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none none ASTN_1_2_N(20%)| 1 0 19 58 2 ENST00000313400.9 ENST00000449730.1 upstream downstream duplicates(2),mismatches(1) CGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCCTGG___AGATGTCTGGCACAGCgGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAGATTGTTGAGGAGCAGATGCACATCCTCCACATTTCTGTGATG|CTTCAAGACTAATCAATCGACGAAGCCATGGCTGTGACAAACCTAAACTTCAtATGTCTT ELPGRIAVQDDLDNTELPFFTLEMSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHISVM|lqd* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27316 TRIM37::MYO19 ENSG00000108395.14::ENSG00000278259.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4604 TRUE 1747 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59084002:- chr17:57059999-57184282:- chr17:57161363:- MYO19 ENSG00000278259.5 protein_coding - - chr17:36495636-36543435:- chr17:36507924:- chr17:34851480-34899284:- chr17:34863763:- chr17:59082066,chr17:59081712,chr17:59082076 chr17:36508181,chr17:36508182,chr17:36508188 NA NA chr17:57159427,chr17:57159073,chr17:57159437 chr17:34864020,chr17:34864021,chr17:34864027 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion high none B-box_zinc_finger(79%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|Myosin_head_(motor_domain)(41%) zf-B_box(60%),zf-C3HC4_3(83%),zf-RING_2(83%)|IQ(100%),Myosin_head(19%) 8 14 28 913 710 ENST00000393066.7 ENST00000610992.4 upstream downstream duplicates(10),mismatches(2) CAACTATTCAACATGGAGGCGGAGGTCGATAAGCTGGAACTGATG___ATGTGAAAATCACCATGAAAAACTTAGTGTATTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATG|GCCTGCTGGATGTGTATGGATTTGAATCATTTCCTGACAACAGTCTGGAACAGTTGTGCATCAACTACGCCAATGAGAAGCTGCAGCAGCATTTTGTGGCTCACTACCTAAGGGCCCAGCAG___GAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAG___GAATGCCGCCTCAATCGACCCAGCAGCGCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27317 TRIM37::MYO19 ENSG00000108395.14::ENSG00000278259.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4604 TRUE 1747 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59084002:- chr17:57059999-57184282:- chr17:57161363:- MYO19 ENSG00000278259.5 protein_coding - - chr17:36495636-36543435:- chr17:36507512:- chr17:34851480-34899284:- chr17:34863351:- chr17:59082066,chr17:59081712,chr17:59082076 chr17:36508181,chr17:36508182,chr17:36508188 NA NA chr17:57159427,chr17:57159073,chr17:57159437 chr17:34864020,chr17:34864021,chr17:34864027 NA NA sense sense stop-codon CDS/splice-site CDS/splice-site deletion high none B-box_zinc_finger(79%),Zinc_finger__C3HC4_type_(RING_finger)(100%)|Myosin_head_(motor_domain)(34%) zf-B_box(60%),zf-C3HC4_3(83%),zf-RING_2(83%)|IQ(100%),Myosin_head(17%) 6 6 16 913 930 ENST00000393066.7 ENST00000610992.4 upstream downstream duplicates(4),low_entropy(2),mismatches(5) CAACTATTCAACATGGAGGCGGAGGTCGATAAGCTGGAACTGATG___ATGTGAAAATCACCATGAAAAACTTAGTGTATTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATG|GAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAG___GAATGCCGCCTCAATCGACCCAGCAGCGCAGCCCAGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27318 EEIG1::CIZ1 ENSG00000167106.12::ENSG00000148337.22 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE TRUE 2524 TRUE 4605 TRUE 1748 EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127979992:- chr9:130702861-130743268:- chr9:130742271:- CIZ1 ENSG00000148337.22 protein_coding - - chr9:128161251-128204383:- chr9:128185776:- chr9:130923530-130966662:- chr9:130948055:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(29%)|Zinc-finger_double-stranded_RNA-binding(100%) NT-C2(0%)|UPF0184(100%),zf-C2H2_jaz(100%) 11 19 16 788 863 ENST00000373095.6 ENST00000651955.1 upstream downstream duplicates(4),mismatches(3) CTCCGCCGTCTCCGCCACCATCAGGGCGGGATCCGGCTCTGGTGTTTTGAGGAGGGGGTGTGGTGTAGGGAAAGGAATCCCGTCCCTCTCCACCTTTTTTCGCCTTCGGGGCTTCAGACTCAGGGAACTCGCTCATGGCTTTCTTGATGAAGAAGAAGAAATTCAAATTCCAAACTACTTTCACCCTGGAGGAGCTGACTGCGGTTCCCTTCGTGAACGGGGTCCTCTTCTGCAAGGTCCGGCTGCTGGATGGAGGGGATTTTGTCAGCTTGTCGTCAAG|GTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACC MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSr|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27320 EEIG1::CIZ1 ENSG00000167106.12::ENSG00000148337.22 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4605 TRUE 1748 EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127979992:- chr9:130702861-130743268:- chr9:130742271:- CIZ1 ENSG00000148337.22 protein_coding - - chr9:128161251-128204383:- chr9:128180799:- chr9:130923530-130966662:- chr9:130943078:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none N-terminal_C2_in_EEIG1_and_EHBP1_proteins(29%)|Zinc-finger_double-stranded_RNA-binding(100%) NT-C2(0%)|UPF0184(100%),zf-C2H2_jaz(100%) 1 0 6 788 1572 ENST00000373095.6 ENST00000651955.1 upstream downstream duplicates(2),mismatches(1) GTTTACATGCCGGTGAGGTCCCCGGCCGCTCCGAACCCCTCCGAGCCCCGGCTCCCCGAGGGTGAAGCCCGCCGGCCCGCGgACcGGgCTtGgGGcTCaCT...CCCGTCCCTCTCCACCTTTTTTCGCCTTCGGGGCTTCAGACTCAGGGAACTCGCTCATGGCTTTCTTGATGAAGAAGAAGAAATTCAAATTCCAAACTACTTTCACCCTGGAGGAGCTGACTGCGGTTCCCTTCGTGAACGGGGTCCTCTTCTGCAAGGTCCGGCTGCTGGATGGAGGGGATTTTGTCAGCTTGTCGTCAAG|ACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAG___ACCAAGATTTACCGCCCTGCCCAGAGGACATCGCCAAGGAAAAACGCACTCCAGCACCTGAG MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSr|qclwktsqtpqrglrkpqspgwthqktkiyrpaqrtsprknalqhl NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27321 MED13::BCAS3 ENSG00000108510.10::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2526 TRUE 4606 TRUE 1749 MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:62052537:- chr17:60019966-60142639:- chr17:60129898:- BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61388618:+ chr17:58754814-59470199:+ chr17:59465979:+ chr17:62052111,chr17:62052114 chr17:61382953,chr17:61382950 NA NA chr17:60129472,chr17:60129475 chr17:59460314,chr17:59460311 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman none none 13 5 18 146 108 ENST00000397786.7 ENST00000589222.5 upstream upstream duplicates(5),mismatches(5) GAATTGTGGATATTTTGGTGGGGTGAAGACCCCAGTTTTGCTGACCTTATTCACCATGACTTATCAG___AAGAAGAAGATGGAGTGTGGGAGAATGGACTTTCCTATGAATGCCGTACTCTGCTTTTCAAAGCAGTTCACAATCTATTGGAACGGTGTTTAATGAACAGGAATTTTGTACGTATTGGCAAGTGGTTTGTAAAGCCTTATGAAAAAGATGAAAAACCTATAAATAAAAG|GGAAAAAAAAAGGAAAAAAAAAACAATGCCAACAGCCCAGCGTCCGTGAGCAACCCAACAGTAACAAAGCATGCGTTCGGGATGGAGGAAG___AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAGGTACCAGCAACCTGCTTCTGACTGGCCAGCC ELWIFWWGEDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKr|ekkrkkktmptaqrp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27322 MED13::BCAS3 ENSG00000108510.10::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2527 TRUE 4606 TRUE 1749 MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:62052537:- chr17:60019966-60142639:- chr17:60129898:- BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61391977:+ chr17:58754814-59470199:+ chr17:59469338:+ chr17:62052111,chr17:62052114 chr17:61382953,chr17:61382950 NA NA chr17:60129472,chr17:60129475 chr17:59460314,chr17:59460311 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high Mitelman none none 5 5 9 146 385 ENST00000397786.7 ENST00000589222.5 upstream upstream duplicates(1),mismatches(1) TGAAGACCCCAGTTTTGCTGACCTTATTCACCATGACTTATCAG___AAGAAGAAGATGGAGTGTGGGAGAATGGACTTTCCTATGAATGCCGTACTCTGCTTTTCAAAGCAGTTCACAATCTATTGGAACGGTGTTTAATGAACAGGAATTTTGTACGTATTGGCAAGTGGTTTGTAAAGCCTTATGAAAAAGATGAAAAACCTATAAATAAAAG|AACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAGGTACCAGCAACCTGCTTCTGACTGGCCAGCCCCCTCCCCTGCTGGAGGAGGGGAGAAGCCCCGCTCTGGTCCTACCCTTCAGTCTCTGCTCTTCCTTCATCAACCACCTTCCCCAAGCTTAGTGACAGCAGCCGCCCATCCTACCTGGATGGAGAAGAGACCCTTCTCCAAGCACCTCAG EDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKr|TSARGKHRDSE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27323 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2528 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58732484:+ chr17:56769934-56812972:+ chr17:56809845:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman Phosphatidylinositol-4-phosphate_5-Kinase(49%)|Rad51(10%) PIP5K(26%)|Rad51(4%) 13 5 16 3536 927 ENST00000619039.5 ENST00000337432.9 upstream upstream duplicates(7),mismatches(1) GTGGAAACCTACATGGTGGTTACCAGGAACGTGTTCAGCCATCGGCTCACTGTGCATCGCAAGTATGACCTCAAG___GGTTCTACGGTTGCCAGAGAAGCGAGCGACAAGGAGAAG___GCCAAGGACTTGCCAACATTCAAAGACAATGACTTCCTCAATGAAGGGCAGAAGCTGCATGTGGGAGAGGAGAGTAAAAAGAACTTCCTGGAGAAACTGAAGCGGGACGTTGAG|GTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAA___CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGA VETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVE|vgnivqvtqpegmhstvsnqtsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 27324 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2529 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58724040:+ chr17:56769934-56812972:+ chr17:56801401:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high Mitelman Phosphatidylinositol-4-phosphate_5-Kinase(49%)|Rad51(17%) PIP5K(26%)|Rad51(25%) 5 8 19 3536 888 ENST00000619039.5 ENST00000337432.9 upstream upstream duplicates(6),mismatches(1) GGAACGTGTTCAGCCATCGGCTCACTGTGCATCGCAAGTATGACCTCAAG___GGTTCTACGGTTGCCAGAGAAGCGAGCGACAAGGAGAAG___GCCAAGGACTTGCCAACATTCAAAGACAATGACTTCCTCAATGAAGGGCAGAAGCTGCATGTGGGAGAGGAGAGTAAAAAGAACTTCCTGGAGAAACTGAAGCGGGACGTTGAG|GGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAG___GTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAA___CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAG NVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVE|gkvgdmllqyg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 27325 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2530 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58732481:+ chr17:56769934-56812972:+ chr17:56809842:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium Mitelman Phosphatidylinositol-4-phosphate_5-Kinase(49%)|Rad51(10%) PIP5K(26%)|Rad51(4%) 8 3 16 3536 927 ENST00000619039.5 ENST00000461706.1 upstream upstream duplicates(3) CTGGGCATGTACCGCCTGACCGTGGATGGTGTGGAAACCTACATGGTGGTTACCAGGAACGTGTTCAGCCATCGGCTCACTGTGCATCGCAAGTATGACCTCAAG___GGTTCTACGGTTGCCAGAGAAGCGAGCGACAAGGAGAAG___GCCAAGGACTTGCCAACATTCAAAGACAATGACTTCCTCAATGAAGGGCAGAAGCTGCATGTGGGAGAGGAGAGTAAAAAGAACTTCCTGGAGAAACTGAAGCGGGACGTTGAG|CAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAA___CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAG LGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVE|qvgnivqvtqpegmhstvsnqtsgi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 27326 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58734118:+ chr17:56769934-56812972:+ chr17:56811479:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium Mitelman Phosphatidylinositol-4-phosphate_5-Kinase(49%)|Rad51(2%) PIP5K(26%)|Rad51(0%) 0 1 11 3536 738 ENST00000619039.5 ENST00000337432.9 upstream upstream none GGAACGTGTTCAGCCATCGGCTCACTGTGCATCGCAAGTATGACCTCAAG___GGTTCTACGGTTGCCAGAGAAGCGAGCGACAAGGAGAAG___GCCAAGGACTTGCCAACATTCAAAGACAATGACTTCCTCAATGAAGGGCAGAAGCTGCATGTGGGAGAGGAGAGTAAAAAGAACTTCCTGGAGAAACTGAAGCGGGACGTTGAG|CCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAACCCAGAAACAAATCTCAAAGTGTACAAATTTATTGATGTTGTGAAATCAATGTGTACAAGTGGACTTGTTACCTTAAAGTATAAATAAAC NVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVE|PQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 27328 USP32::MED1 ENSG00000170832.13::ENSG00000125686.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2531 FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345481:- chr17:58254688-58499831:- chr17:58422842:- MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39447904:- chr17:37560538-37607525:- chr17:37604157:- chr17:60334258,chr17:60334260 chr17:39448879,chr17:39448878 NA NA chr17:58411619,chr17:58411621 chr17:37605132,chr17:37605131 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none |Mediator_of_RNA_polymerase_II_transcription_subunit_1(100%) |Med1(100%) 9 8 12 452 2058 ENST00000300896.9 ENST00000394287.7 upstream downstream duplicates(2) GCGAGATCAGGCTCCGACCCCCCGCCGAGGGGATGAGGGGAGCATGGGTGCCAAGGAGTCACGGATCGGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG___TTACAGATGTAGAGCTAAAACGACTGAAGGATGCTTTCAAGAGGACCTGTGGACTCTCATATTACATGGGCCAGCACTGCTTCATCCGGGAAGTGCTTGGGGATGGAGTGCCTCCAAAGGTTGCTGAG|AGTCtGAAAAGCTGAGTAAGATGAGTTCTCTCCTGGAACGGCTCCATGCAAAATTTAACCAAAATAGACCCTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTCATG___GAGAAGAGGGTTGTGATGAGTTCTGGAGGGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAG___TAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGC MGAKESRIGFLSYEEALRRVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAE|slks* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27329 TPM4::SYCE2 ENSG00000167460.17::ENSG00000161860.8 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2532 TRUE 4608 TRUE 1751 TPM4 ENSG00000167460.17 protein_coding + + chr19:16067021-16103002:+ chr19:16089120:+ chr19:16177831-16213812:+ chr19:16199930:+ SYCE2 ENSG00000161860.8 protein_coding - - chr19:12898786-12919293:- chr19:12904666:- chr19:13009600-13030107:- chr19:13015480:- chr19:16089940,chr19:16090165,chr19:16089941 chr19:12914613,chr19:12914613,chr19:12914612 NA NA chr19:16200750,chr19:16200975,chr19:16200751 chr19:13025427,chr19:13025427,chr19:13025426 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Tropomyosin(67%)| CLZ(100%),Tropomyosin(51%),Tropomyosin_1(100%)|Acyl-CoA_dh_1(45%),Acyl-CoA_dh_2(100%) 2 12 14 1747 73 ENST00000646974.2 ENST00000293695.8 downstream downstream duplicates(7),mismatches(1),multimappers(1) GCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACT___AAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAG|TGCCAGTTGCCAGCTGACGGTCCTGGAAGGGAAGTCGGGACTCTACTTCTCCTCTCTGGACTCAAGCATTGACATCCTGCAGAAGAGAGCCCAGGAGCTGATCGAAAACATCAACAAGAGCCGGCAAAAGGACCATGCACTCATGACCAACTTCAGGAACAGCCTGAAGACCAAG___GTTTCGGATCTGACAGAGAAATTAGAGGAGAGGATCTATCAGATTTATAATGACCACAACAAGATCATCCAGGAAAAGCTCCAAGAGTTCACC LERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEK|cqlpadgpgrevgtllllsglkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tropomyosin 4 1 ALCL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27330 TPM4::SYCE2 ENSG00000167460.17::ENSG00000161860.8 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4608 TRUE 1751 TPM4 ENSG00000167460.17 protein_coding + + chr19:16067021-16103002:+ chr19:16089120:+ chr19:16177831-16213812:+ chr19:16199930:+ SYCE2 ENSG00000161860.8 protein_coding - - chr19:12898786-12919293:- chr19:12900648:- chr19:13009600-13030107:- chr19:13011462:- chr19:16089940,chr19:16090165,chr19:16089941 chr19:12914613,chr19:12914613,chr19:12914612 NA NA chr19:16200750,chr19:16200975,chr19:16200751 chr19:13025427,chr19:13025427,chr19:13025426 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Tropomyosin(67%)| CLZ(100%),Tropomyosin(51%),Tropomyosin_1(100%)|Acyl-CoA_dh_1(21%),Acyl-CoA_dh_2(100%) 1 0 3 1747 82 ENST00000646974.2 ENST00000293695.8 downstream downstream duplicates(1) TGGAGGGTGAGCTGGAGAGGGCAGAGGAGCGTGCGGAGGTGTCTGAACT___AAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACAATCTGAAATCTCTGGAGGCTGCATCTGAAAAG|GTTTCGGATCTGACAGAGAAATTAGAGGAG...AAAATGGCAAAGATCAGCCATTTGGAGACAGAGCTCAAACAAGTCTGCCACAGCGTGGAGACTGTGTACAAAGACCTGTGTCTCCAGCCTGAG___CAGAGCCTAAGACTCAGATGGGGGCCAGACCACTCTAGGGGAAAGTCCC EGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEK|VSDLTEKLE NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tropomyosin 4 1 ALCL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27333 NUMA1::FCHSD2 ENSG00000137497.19::ENSG00000137478.15 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72080458:- chr11:71713910-71791739:- chr11:71791504:- FCHSD2 ENSG00000137478.15 protein_coding - + chr11:72836745-73142318:- chr11:73043813:+ chr11:72547790-72853363:- chr11:72754858:+ NA NA NA NA NA NA NA NA sense antisense unknown 5'UTR/splice-site intron inversion/5'-5' high none none none 3 21 1 80 50 ENST00000613205.4 unknown upstream upstream duplicates(4),inconsistently_clipped(1) CTGGCGCGAGCCCACGAAGAGGTACGATTCCGGAGAATCGCGAGGCAGAGCGGGAGCGCGCAGCCAG|CTAGATGTAGAGGATCCATTGAGGACTTGAGGCCCTAAAGGATCTAGAAATCTCAAGATCAAAGGAGCCTGGACTAAAGGATCTAGGAACCTCAAGATTAAAGGAGCCTGGATCATTGAATCATCATCCCTTGGAAGGCCATTCACCAATTTTGGCAACAAACTATTAG___CTGTGAACACTTCCAGAATTCTGGCAATCTGAAAGCATGGATTCTCATC...___GGTCTCACTCTGGTCATCCAAGCTGGAGTATAGTGGCACAATCTCAGCTCACTGCAGCCTCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27335 ZFP64::PHACTR3 ENSG00000020256.20::ENSG00000087495.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2535 FALSE NA FALSE NA ZFP64 ENSG00000020256.20 protein_coding - - chr20:52051663-52204308:- chr20:52160123:- chr20:50668202-50820847:- chr20:50776662:- PHACTR3 ENSG00000087495.17 protein_coding + + chr20:59577509-59847711:+ chr20:59743107:+ chr20:58152564-58422766:+ chr20:58318162:+ chr20:52133910,chr20:52134174,chr20:52134181 chr20:59653322,chr20:59653249,chr20:59653242 NA NA chr20:50750449,chr20:50750713,chr20:50750720 chr20:58228377,chr20:58228304,chr20:58228297 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none C2H2-type_zinc-finger_domain(50%),Zinc_finger__C2H2_type(24%)|RPEL_repeat(100%) zf-C2H2(31%),zf-C2H2_6(33%),zf-H2C2_5(70%)|RPEL(100%) 5 4 11 194 7 ENST00000371518.6 ENST00000359926.7 upstream upstream duplicates(2),mismatches(1) GCGGCATTTAAAAATTCACACGG___GAGACAAACCCCATAAGTGTGAAGTCTGTGGCAAGTGCTTTAGCCGGAAAGACAAGCTGAAAACTCACATGCGGTGCCACACGGGCGTGAAGCCCTACAAGTGTAAGACGTGTGACTACGCCGCTGCCGACAGCAGCAGCCTCAACAAGCACCTGAGGATCCACTCGGACGAGCGGCCCTTCAAATGCCAGATCTGCCCCTACGCCAGCCGCAACTCCAGCCAGCTCACTGTCCACCTGCGATCCCACACGG|ATGAGATGGACCAAACGCCCCCGGCGCGTCCTGAATATCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGAACAGCAAACTGGCCACCCTGGGCAGGATCTTCAAACCCTGGAAATGGAGGAAAAAGAAAAACGAAAAACTGAAGCAGACAACGTCAG___CGCTGGAGAAGAAGATGGCCGGCAGGCAAGGCCGAGAGGAGCTCATCAAGAAGGGGCTGCTGGAGATGATGGAGCAGG___ATGCTGAAAGCAAAAC RHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT|dEMDQTPPARPEYLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKNEKLKQTTSALEKKMAGRQGREELIKKGLLEMMEQDAESK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27338 BCAS3::ENSG00000285939 ENSG00000141376.24::ENSG00000285939.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61084564:+ chr17:58754814-59470199:+ chr17:59161925:+ ENSG00000285939 ENSG00000285939.2 lncRNA - - chr17:53276760-54365634:- chr17:54066822:- chr17:51354121-52442995:- chr17:52144183:- chr17:61194788,chr17:61194789,chr17:61194791,chr17:61194794,chr17:61194799,chr17:61194803,chr17:61194805,chr17:61194779,chr17:61194807,chr17:61194812,chr17:61194820,chr17:61194822,chr17:61194824,chr17:61194775,chr17:61194829,chr17:61194770,chr17:61194772,chr17:61194773,chr17:61194774,chr17:61194777,chr17:61194771 chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845 NA NA chr17:59272149,chr17:59272150,chr17:59272152,chr17:59272155,chr17:59272160,chr17:59272164,chr17:59272166,chr17:59272140,chr17:59272168,chr17:59272173,chr17:59272181,chr17:59272183,chr17:59272185,chr17:59272136,chr17:59272190,chr17:59272131,chr17:59272133,chr17:59272134,chr17:59272135,chr17:59272138,chr17:59272132 chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Breast_carcinoma_amplified_sequence_3_(100%)| BCAS3(100%),WD40(100%)| 4 4 11 145 10 ENST00000407086.8 ENST00000652614.1 downstream downstream duplicates(4) GGCCAAACCACAGTTATCTCATCCAGTTCATCTGTGTTGCAGTCTCATGGTCCGAGTGACACGCCACAGCCTCTTTTGGATTTTGATACAGATGATCTTGATCTCAACAGTCTCAG___GATCCAGCCAGTCCGCTCTGACCCCGTCAGCATGCCAGGGTCATCCCGTCCAGTCTCTGATCGAAGGGGAGTTTCCACAGTGATTGATGCTGCCTCAG|GTCATTGGGTCAAGGTTTTGGCCAGAGAATAGCAAGGATGACTTATCTCTGCTCCACTATGTCTGGAACCTCTTGGAATCATTTGGAGTCTTCTTCACTCTCTTGCCTGGCACCTGGACTGGGAAAACTTGGAACCCACTGGGACTGTTGACCAAAGCACAAACATGTGGCCTCTTCATGTGGCTTGGGCTTTCCACAGCATGGAGGCTGATTTCTGAGGAGAGGCCCAAAAATAATA GQTTVISSSSSVLQSHGPSDTPQPLLDFDTDDLDLNSLRIQPVRSDPVSMPGSSRPVSDRRGVSTVIDAAS|ghwvkvlare* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27339 MIR924HG::TMEM241 ENSG00000267374.3::ENSG00000134490.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39800069:- chr18:36786881-37380286:- chr18:37380033:- TMEM241 ENSG00000134490.14 protein_coding - + chr18:23197144-23437961:- chr18:23433426:+ chr18:20777108-21017925:- chr18:21013390:+ chr18:39789978,chr18:39789988 chr18:23422515,chr18:23422505 NA NA chr18:37369942,chr18:37369952 chr18:21002479,chr18:21002469 NA NA sense antisense unknown exon/splice-site intron inversion/5'-5' high none none none 8 3 8 113 10 ENST00000670992.1 unknown upstream upstream duplicates(3),mismatches(2) AAGTGCTCTAGCAGGGGAGTCTGACCTTGTGAGGGAATACCTGTGTCCCCCCTTTTTTCCCCTTTTTACCCAATAAAACCCTGCCTTACTCACCCTTTAAATCATCTGCGAGCCTaAATTTTCATGGCCGTGGGACGGACAAGAACTTTATCTTCAGCTGAACTAAGAAAAAGTCCTGCAACATTTTTGGCGCGCAATGTGGGGGCACCAGAAGCG|ATGCCAACCACTTGTCCAGAACAGAAATGAACTTTGCCTCTGAGCTGAAGGCTCAATTGCTATGAGGGGAAGAAGGACAGCTGGCTGCCTAGGGCCTGATTACAGCTGGAACCTCCCAAAGGATGGAGGAACACGTCATCAGCCAGGGCCAGCCCAGGCCACCAAGCCAGAGCTCAAGGGTGTGGTGCTTTCTCCTCCCTCCCTACCTAGGGCAGCTTCCTTTGACAGCACACTTGCTGCTTCAAACTTCTAACAAAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27349 MGAT4C::OTOGL ENSG00000182050.14::ENSG00000165899.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MGAT4C ENSG00000182050.14 protein_coding - - chr12:85955666-86838904:- chr12:86435157:- chr12:86349445-87232681:- chr12:86828934:- OTOGL ENSG00000165899.12 protein_coding + - chr12:80099537-80380880:+ chr12:80255135:- chr12:80493317-80774660:+ chr12:80648915:- chr12:86397009 chr12:80292619 NA NA chr12:86790787 chr12:80686399 NA NA sense antisense unknown 5'UTR/splice-site CDS deletion/5'-5' high none none none 3 7 4 86 102 ENST00000548651.6 unknown upstream downstream duplicates(3),mismappers(1),mismatches(5) AGGAACTGGAGATCAGCCAGATCACTTGTATGCACAAAGCTGCTGTGGATCTGTCTTTCAAACAAGAGCTGCAGAAAACGCTATAGCAAGGTTGAAGCTTTATCCACTCTG|TTCCTTTCACGAGGATGTATTGGCACATGCCAATAAAAGAATAATGTCGACCATCAAAAGTTGTAAAGTGAGAATCACCTACAACTGAGCATTGAACTGCCAAAAAAAAAAAGAAAACAAAGAAAAAGAAAAGGAGGTGGAGATAGAGGAGGAGAGAGAGGAGGATGATACCATTAGGTTAATCCTTTAAAAGCAGATCAACTTAGGGTAAATAATCATGCATCAAAACTTTGAAAATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE TRUE hsa-mir-3059 chr12:86745068-86745149:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27353 NCOA2::ZNF704 ENSG00000140396.13::ENSG00000164684.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2544 FALSE NA FALSE NA NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70403700:- chr8:71022017-71316043:- chr8:71315935:- ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821615:- chr8:81540686-81787016:- chr8:81733850:- chr8:70366369 chr8:80822999 NA NA chr8:71278604 chr8:81735234 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 1 7 5 61 75 ENST00000452400.7 ENST00000519936.2 upstream downstream duplicates(4),mismatches(1) GCAGCAGTTATTAACACGGGAACATGGCGGCCGCAGCCTCGGCTACAGCTTCGGCGGCGAAGGTCAGCGCCGACGGCAGCCGGCACCTGACGGCGTGACCGACCCGAGCCG|GTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTCAGAGGACTTAAAACGTGACTGTGGTAAAAAAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGATGTGAAAACAGCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAG___GAAATCTTCAGAGGAACTAGACATGGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27354 LAMP1::MCF2L ENSG00000185896.11::ENSG00000126217.22 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2545 FALSE NA FALSE NA LAMP1 ENSG00000185896.11 protein_coding + + chr13:113297239-113323672:+ chr13:113297495:+ chr13:113951554-113977987:+ chr13:113951810:+ MCF2L ENSG00000126217.22 protein_coding + + chr13:112894378-113099742:+ chr13:113064304:+ chr13:113548692-113754056:+ chr13:113718618:+ chr13:113299362,chr13:113299666 chr13:113062934,chr13:113062937 NA NA chr13:113953677,chr13:113953981 chr13:113717248,chr13:113717251 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Divergent_CRAL/TRIO_domain(23%),PH_domain(100%),RhoGEF_domain(100%),Spectrin_repeat(100%),Variant_SH3_domain(100%) |CRAL_TRIO_2(0%),PH(100%),RhoGEF(100%),SH3_1(100%),SH3_2(100%),Spectrin(100%) 0 10 2 245 295 ENST00000332556.5 ENST00000375608.7 downstream upstream duplicates(1),mismappers(1) tCCGCACCGTACCCGGCCGCCTCGCGCCATGGCGGCCCCCGGCAGCGCCCGGCGACCCCTGCTGCTGCTACTGCTGTTGCTGCTGCTCG|GTCATAATGCTGAGCTCCGTACCAGACTTACACGGTTACATCGATAAGTCGCAGCTGACCGAGGACCTGGGTGGGACCCTGGACTACTGCCACTCCCGGTGGCTGTGCCAGCGCACG___GCCATCGAAAGTTTCGCCCTCATGGTGAAGCAGACGGCTCAGATGCTGCAGTCCTTCGGGACCGAGCTGGCTGAAACAGAGCTGCCCAATGACGTCCAGTCGACAAGCTCAGTGCTGTGTGCGCACACAGAGAAGAAGGACAAGGCGAAG___GAGGATTTGAGGCTGGCACTGAAAGAGGGGCACAGTGTCCTGGAGAGCCTCAGGGAGCTGCAGGCTGAGGGCTCAGAGCCCAGTGTGAACCAGGACCAGCTTG MAAPGSARRPLLLLLLLLLL|ghnaelrtrltrlhr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27365 HEATR6-DT::HEATR6 ENSG00000267416.2::ENSG00000068097.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2546 FALSE NA FALSE NA HEATR6-DT ENSG00000267416.2 lncRNA + + chr17:60079309-60088713:+ chr17:60079472:+ chr17:58156670-58166074:+ chr17:58156833:+ HEATR6 ENSG00000068097.16 protein_coding - - chr17:60041008-60078922:- chr17:60059521:- chr17:58118369-58156283:- chr17:58136882:- chr17:60080724,chr17:60080715 chr17:60059656,chr17:60059665 NA NA chr17:58158085,chr17:58158076 chr17:58137017,chr17:58137026 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none |Domain_of_unknown_function_(DUF4042)(31%) |DUF4042(24%) 1 3 7 17 377 ENST00000589740.1 ENST00000184956.11 downstream downstream duplicates(1),mismatches(1) GCCGGGAGTGGTGGCGGGCGCCTGTTGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGGGCTTGCAATGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAGAAAAAAAAAAAAAGAAAGAAATTGGCTTGGAGATTTTTCGCCGGCCACTCCTTCTTGAGCCCTGACTGAAAA|TGCCTTGCAAATTTAGTATCAAATGCACCTTATGATCGTCTAAAACTCAGCCTGCTGACCAAAGTCTGGAACCAGATAAAGCCTTATATTCGCCACAAAG___ATGTTAATGTTCGTGTGTCAAGTCTCACACTCTTGGGAGCTATAGTGTCCACCCACGCACCTTTACCTGAAGTCCAACTACTTCTGCAACAG...ACTCGGTAATAGCAATTCAGCAACCCCTCACCTCAGCCCTCCTGATTGGTGGAAGAAAGCCCCTGCAGGACCCTCTCTGGAAGAAACGTCAGTTAGCTCACCTAAGGGGTCTTCAGAGCCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-4737 chr17:60043025-60043105:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27366 ZNF185::GABRA3 ENSG00000147394.20::ENSG00000011677.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF185 ENSG00000147394.20 protein_coding + + chrX:152898067-152973481:+ chrX:152945464:+ chrX:152066611-152142025:+ chrX:152114008:+ GABRA3 ENSG00000011677.13 protein_coding - + chrX:152166234-152451315:- chrX:152299868:+ chrX:151334706-151619787:- chrX:151468340:+ chrX:152949629,chrX:152949629,chrX:152949628 chrX:152291747,chrX:152291753,chrX:152291742 NA NA chrX:152118173,chrX:152118173,chrX:152118172 chrX:151460219,chrX:151460225,chrX:151460214 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 6 1 3 207 11 ENST00000695776.1 unknown downstream upstream duplicates(3),mismatches(4) GCAAAGGCAGACCCAAAGGG___GGCCTTGGCTGATTATGAGGGGAAGGATGTGGCCACCAGGGTCGGAGAGGCCTGGCAGGAGAGGCCTGGAGCTCCAAGAGGTGGCCAAGGAGACCCAGCTGTACCCGCTCAGCAACCTGCAGATCCCAGCACCCCAGAGCGGCAGAGCAGCCCCAGCGGATCTGAGCAACTTGTCAGACGAGAGAGTTGTGGCAGCAG|GTTTGCTCCAAAGGCAAAGACACAAAGGGGGACTGTGACACAGGTGGCTAAAACTCTGAGAGAAACCTCACTGGTCTTACCACAAAGAGAGGGAAAAGGGCTTCTGCAGGTCAGAGAGTGTGGGGGAATACCAGAGTGGAGATGGTTAAAGAAGATGTTCTACTAATTTCTGTGTTTGAGGCCCCACAAATAATAGATTCACTCTTGAGCTGCACATGCAGAGGCCAAACCCAAGGTAGCATAGAAAAAGCTTTGAGAACTACACTATATTTAAACCACTACATAAATTTCAGAAAAATCC AKADPKGALADYEGKDVATRVGEAWQERPGAPRGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRESCGSr|fapkaktqrgtvtqvaktlretslvlpqregkgllqvrecggipewrwlkkmfy* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27373 GABRB3::RYR3 ENSG00000166206.16::ENSG00000198838.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26544864:- chr15:26788699-27184686:- chr15:26790011:- RYR3 ENSG00000198838.14 protein_coding + + chr15:33310962-33866121:+ chr15:33628471:+ chr15:33603163-34158322:+ chr15:33920672:+ chr15:26544064,chr15:26544068 chr15:33628121,chr15:33628117 NA NA chr15:26789211,chr15:26789215 chr15:33920322,chr15:33920318 NA NA sense sense unknown 3'UTR CDS/splice-site inversion high none Neurotransmitter-gated_ion-channel_ligand_binding_domain(100%),Neurotransmitter-gated_ion-channel_transmembrane_region(100%)|Ion_transport_protein(100%),RIH_domain(51%),RyR_and_IP3R_Homology_associated(100%),RyR_domain(97%),Ryanodine_Receptor_TM_4-6(100%),SPRY_domain(64%) Neur_chan_LBD(100%),Neur_chan_memb(100%)|EF-hand_5(100%),Ion_trans(100%),RIH_assoc(100%),RR_TM4-6(100%),RYDR_ITPR(55%),RyR(76%),SPRY(51%) 1 3 3 4 7 ENST00000541819.6 ENST00000415757.7 upstream upstream duplicates(2) GTGAATGGCATCTCGTT___...GAAGAGAACTCTGACTGTGTTAACAGAAGAGAGTTGAATTGGAGTCTCTGTTGTGTTAAAATGACCTCTCGTTACTCCACAGTAGTTATTTGAGCCAGTGACTGAGTCGCGTTGAGGAATTCTGAACCCGGACCTCTGACGTTGTTGGGAGGTGGCTGTTACCCACACCCAGACCTCTTGA|GTTATTTTGCCACCTCACCTAGAAAAGATCCGAGACAGACTAGCTGAAAACATCCATGAGCTTTGGGGAATGAATAAAATAGAACTTGGCTGGACTTTCGGCAAG___ATACGAGATGACAATAAAAGACAACACCCTTGCCTTGTGGAGTTTTCAAAGCTCCCAGAAACTGAG...CAGAaCAAGAACTAG___CTGACTCGGCTGTGGAGAAGGTCAGCATAGACAAGATCCGATTTTTCCGGGTAGAGCGATCTTATGCAGTGAGATCTGGAAAGTGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27374 KAT6A::PLAT ENSG00000083168.11::ENSG00000104368.19 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KAT6A ENSG00000083168.11 protein_coding - - chr8:41929479-42051994:- chr8:42048378:- chr8:41786997-41909512:- chr8:41905896:- PLAT ENSG00000104368.19 protein_coding - - chr8:42174718-42207709:- chr8:42180685:- chr8:42032236-42065227:- chr8:42038203:- chr8:42009732,chr8:42009735 chr8:42181722,chr8:42181722 NA NA chr8:41867250,chr8:41867253 chr8:42039240,chr8:42039240 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |Trypsin(100%) |Trypsin(100%) 2 0 5 64 5 ENST00000406337.6 ENST00000220809.9 upstream downstream duplicates(1),mismatches(2) TAATAAACAAAATGTGGATTGGAATAAACTGATAAAGCGGGCAGTTGAGGGCTTGGCAGAGTCTGGTGGCTCAACTTTGAAAAGCATTGAACGTTTTTTGAAAGGTCAGAAGGATGTGTCTGCATTATTCGGAGGCAGTGCTGCCTCTGGCTTTCACCAGCAGTTACGATTGGCTATCAAACGTGCCATTGGCCACGGCAGACTCCTTAAAGATGGACCTCTTTATCGGCTCAACACTAAAGCAACCAACGTGGATGGGAAAGAGAGTTGTGAGTCTCTTTCCTGTTTACCTCCAGTGTCCCTTCTTCCACATGAAAAGGATAAG|CCACCTGCGGCCTGAGACAGTACAGCCAGCCTCAGTTTCGCATCAAAGGAGGGCTCTTCGCCGACATCGCCTCCCACCCCTGGCAGGCTGCCATCTTTGCCAAGCACAGGAGGTCGCCCGGAGAGCGGTTCCTGTGCGGGGGCATACTCATCAGCTCCTGCTGGATTCTCTCTGCCGCCCACTGCTTCCAGGAGAG___GTgTCCGCCCCACCACCTGACGGTGATCTTGGGCAGAACATACCGGGTGGTCCCTGGCGAG NKQNVDWNKLIKRAVEGLAESGGSTLKSIERFLKGQKDVSALFGGSAASGFHQQLRLAIKRAIGHGRLLKDGPLYRLNTKATNVDGKESCESLSCLPPVSLLPHEKDK|ppaa* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE K(lysine) acetyltransferase 6A 1 Yes AML leukaemia_lymphoma oncogene, fusion translocation, amplification FALSE NA NA NA NA NA NA NA NA NA 27378 PRKCA::BCAS3 ENSG00000154229.12::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRKCA ENSG00000154229.12 protein_coding + + chr17:66302613-66810743:+ chr17:66554579:+ chr17:64298731-64806861:+ chr17:64550697:+ BCAS3 ENSG00000141376.24 protein_coding + - chr17:60677453-61392838:+ chr17:61237682:- chr17:58754814-59470199:+ chr17:59315043:- chr17:66591776,chr17:66591777,chr17:66591777 chr17:61253238,chr17:61253237,chr17:61253238 NA NA chr17:64587894,chr17:64587895,chr17:64587895 chr17:59330599,chr17:59330598,chr17:59330599 NA NA sense antisense unknown CDS/splice-site intron inversion/3'-3' high none Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(49%)| C1_1(98%)| 0 1 4 1 114 ENST00000284384.6 unknown downstream downstream duplicates(1) AGCTCTTCTCCCCTGTATTGCTAGTCTGCCTCTACCTTTTGAGATCCTACTCACTCTCCGAAG|AATTATTTTGAGTAT...CGTACTGTATCCAGAGCTGGTTCCTGCCAGTGGATTCAGGGTCTTGCTGACTTCAAGAATGAAGCTGCGGACCTTCGAG___TTTTCACGGACCAAGAAACTGAAGTAGAGAGATGATGAGGAATGTGCCCGAGGTTGCAGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase C alpha type AGC PKC PKCa P17252 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27379 FBXL20::GALNT17 ENSG00000108306.13::ENSG00000185274.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- GALNT17 ENSG00000185274.13 protein_coding + - chr7:71132144-71713600:+ chr7:71493342:- chr7:70597130-71178585:+ chr7:70958327:- chr17:39376624 chr7:71515440 NA NA chr17:37532877 chr7:70980425 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none none none 1 4 0 125 21 ENST00000577399.5 unknown upstream downstream none CGGCAGCCGCACTGCCCCAATCTAGACACATCCAGAAGAGGAGGAAAATGGCTCCGAGCAGGGACCGCCTGCTGCACTTTGGGTTCAAGGCGACA|GGAGCGTGATTCTTCAATATGAAaGTGAACTGGGGCCCAGTCAAGAACATCCAGATAACTGGGGCAACATCACAGATGCCTGGCAGAACCAtGCTGGGTAGAGGAGCCCATGCCTACACTCACTGTCCTGGAGGAAAAACCCAGGAGAGCCTTGAAAGGCACTGGCTGGATTTGAGCATTAGACTGTGAGCTCTTCAAAGACAAGcTG MAPSRDRLLHFGFKAT|ga* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27380 TYW1B::AUTS2 ENSG00000277149.5::ENSG00000158321.19 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA TYW1B ENSG00000277149.5 protein_coding - - chr7:72558744-72828200:- chr7:72616672:- chr7:72023729-72298779:- chr7:72081657:- AUTS2 ENSG00000158321.19 protein_coding + - chr7:69598296-70793506:+ chr7:69986648:- chr7:69063282-70258492:+ chr7:69451634:- chr7:72590130,chr7:72590133 chr7:69988931,chr7:69988931 NA NA chr7:72055115,chr7:72055118 chr7:69453917,chr7:69453917 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Flavodoxin(100%),Radical_SAM_superfamily(100%),Wyosine_base_formation(100%)| Flavodoxin_1(100%),Radical_SAM(100%),Wyosine_form(100%)| 2 1 1 46 4 ENST00000612372.4 unknown upstream downstream none GCAACAACGAACTGTCTACAGACTGATGCTCGTGAAAGCATGGAACGTGGACGAGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGGAATCCTGACTTCA...GGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCCTGATAGCACACAGAAAG|AAAACTTAGTTCTTCAAGCAAGGAGCACTGTCTTATTCAAGGAGTAAGGCCTGAAGACCCTCAGGAATACTGGAAAGTTTACAGTGGCCTTTGGCCAAGAGCAGTAACATTCTCACCTGGAAACTGACTTTACTGCCAAGAACAAC VDLIPEYEIACEHEHSNCLLIAHRK|kt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27381 ENSG00000231563::ASH1L ENSG00000231563.3::ENSG00000116539.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000231563 ENSG00000231563.3 lncRNA + + chr1:228407196-228428867:+ chr1:228407478:+ chr1:228594897-228616568:+ chr1:228595179:+ ASH1L ENSG00000116539.14 protein_coding - - chr1:155335268-155563162:- chr1:155521618:- chr1:155305059-155532953:- chr1:155491409:- chr1:228420340 chr1:155554877 NA NA chr1:228608041 chr1:155524668 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site inversion high none |AWS_domain(100%),BAH_domain(100%),Bromodomain(100%),SET_domain(100%) |AWS(100%),BAH(100%),Bromodomain(100%),PHD(100%),SET(100%) 1 1 1 9 42 ENST00000701501.1 ENST00000677213.1 downstream downstream duplicates(1) CTTCCCAGGGCGGGTATCCTCGGAAGGCCCGGCCCTCACAGCCTTGGCAGGCCAAGGTCAGAATGATTGGAGTTGGGGGATGGGACGGGGGCATCCCTCCAGGACCAGCTCTCCAGGAGGCCCACATTCTTTCTGCGGGAACCACTCCAAAGGGGCATGCTGTTCCAGGCAGCCCCTCGCGCAGACACTCCGGCTTTGTCGAG|AGAAAGATGCTGGTTTCGAGTTTTGGAGATCCTTGTTTTTTATGGAACACAGTTCTGTAAAATTTTCATAAGATTCCTTGGCAATAACATACGCTTGTGATGGACCCTAGAAAT...CTGGGAAAGATGATGGTTTGACTGATGCACAGCAACAGTTTTCAGTGAAAGAAACAAACTTTTCAGAGGGAAATTTAAAATTGAAAATTGGCCTCCAGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-555 chr1:155346350-155346445:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27385 FAM149B1::ENSG00000289007 ENSG00000138286.15::ENSG00000289007.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4617 TRUE 1752 FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73228184:+ chr10:74927877-75004262:+ chr10:74987942:+ ENSG00000289007 ENSG00000289007.2 lncRNA - - chrX:2566024-2609207:- chrX:2574289:- chrX:2484065-2527248:- chrX:2492330:- chr10:73231467 chrX:2584038 NA NA chr10:74991225 chrX:2502079 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_of_unknown_function_(DUF3719)(100%)| DUF3719(100%)| 0 1 2 93 1 ENST00000242505.11 ENST00000692674.1 downstream downstream mismatches(2) GATGATGAGAGTAATGTTGCAGTTACCAGACCCGATTCAGAAAGTTCCTGTGTGCTGtGTGAACTACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGCTGTACATTACCTCAAATCCG|GGTATAACAGAAGTCCGGGCCACATGCCaTAAA...AAG___GGCCCCTAAAGTGATGGAGTGGCTGTGGAGTCTTCAGTTTGCCTGCATGCCAGGTGCAAGCCAAGGAGTTGTAAGAGCATCCCCCTCATAAGCTACCA DDESNVAVTRPDSESSCVLcELHPLVLPRVPQSKVLYITSNP|gitevratch NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27386 FAM149B1::ENSG00000289007 ENSG00000138286.15::ENSG00000289007.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4617 TRUE 1752 FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73230525:+ chr10:74927877-75004262:+ chr10:74990283:+ ENSG00000289007 ENSG00000289007.2 lncRNA - - chrX:2566024-2609207:- chrX:2574289:- chrX:2484065-2527248:- chrX:2492330:- chr10:73231467 chrX:2584038 NA NA chr10:74991225 chrX:2502079 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Protein_of_unknown_function_(DUF3719)(100%)| DUF3719(100%)| 1 0 2 105 1 ENST00000242505.11 ENST00000692674.1 downstream downstream mismatches(2) CCACAGTCTAAGGTGCTGTACATTACCTCAAATCCG___ATGAGTCTCTGTCAAGCAAGCAGACATCAGCCAAATGTGAATGATCTCTTGGTTCATGGAATGCC...TCCCTAATGGACAAGCTCCT|GGTATAACAGAAGTCCGGGCCACATGCCaTAAAACAGCTGGCAGACAGATCTCAGAGTCTCTGTGCTACAGGAACATGGAG SLMDKLl|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27387 BCAS3::TANC2 ENSG00000141376.24::ENSG00000170921.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60684036:+ chr17:58754814-59470199:+ chr17:58761397:+ TANC2 ENSG00000170921.16 protein_coding + - chr17:62966235-63427703:+ chr17:63214965:- chr17:61043596-61505064:+ chr17:61292326:- chr17:60687457,chr17:60687454,chr17:60687452 chr17:63219805,chr17:63219808,chr17:63219808 NA NA chr17:58764818,chr17:58764815,chr17:58764813 chr17:61297166,chr17:61297169,chr17:61297169 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 0 2 1 57 5 ENST00000407086.8 unknown downstream downstream none CCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG|GCTTTTTGGGAGGTTACAACTGACTACCAACTTGAAGGACTGGATTTAGAACCTAtCCTCT...GGTGAGACCAGATACTCAGAGGATACTACTGGATCAATGTGGTACAAGGGTTGGACTGTACTGGGTTTGGCATCTGCTATTCTCTGAATGTTTGTGTCCCC YMESVVTFLQDVVPQ|afwevttdyqlegldlepil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27388 BCAS3::ENSG00000233635 ENSG00000141376.24::ENSG00000233635.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60684036:+ chr17:58754814-59470199:+ chr17:58761397:+ ENSG00000233635 ENSG00000233635.2 lncRNA - - chr17:63193930-63339053:- chr17:63214965:- chr17:61271291-61416414:- chr17:61292326:- chr17:60687457,chr17:60687454,chr17:60687452 chr17:63219805,chr17:63219808,chr17:63219808 NA NA chr17:58764818,chr17:58764815,chr17:58764813 chr17:61297166,chr17:61297169,chr17:61297169 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none none none 0 2 1 57 5 ENST00000407086.8 unknown downstream downstream none CCTACATGGAAAGTGTTGTGACTTTTCTGCAGGATGTTGTGCCACAG|GCTTTTTGGGAGGTTACAACTGACTACCAACTTGAAGGACTGGATTTAGAACCTAtCCTCT...GGTGAGACCAGATACTCAGAGGATACTACTGGATCAATGTGGTACAAGGGTTGGACTGTACTGGGTTTGGCATCTGCTATTCTCTGAATGTTTGTGTCCCC YMESVVTFLQDVVPQ|afwevttdyqlegldlepil NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27397 STAU1::ARFGEF2 ENSG00000124214.21::ENSG00000124198.10 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49174195:- chr20:47729876-47804904:- chr20:47790732:- ARFGEF2 ENSG00000124198.10 protein_coding + - chr20:48921711-49036693:+ chr20:48942135:- chr20:47538248-47653230:+ chr20:47558672:- chr20:49156811,chr20:49156811,chr20:49156811 chr20:48986493,chr20:48986516,chr20:48986519 NA NA chr20:47773348,chr20:47773348,chr20:47773348 chr20:47603030,chr20:47603053,chr20:47603056 NA NA sense antisense unknown 5'UTR/splice-site intron deletion/read-through/5'-5' medium none none none 3 3 6 1507 19 ENST00000371828.7 unknown upstream downstream duplicates(2),mismatches(6) GCTGCCGCGTCTCTCTCGGCTCCCGCTTCCTTTGACCGCCTCCCCCCCC-GGCCCGGCGGCGCCCGCCTCCTCCACGGCCACTCCGCCTCTTCCCTCCCTTCGTCCCTTCTTCCTCTCCCTTTTTTCCTTCTTtCT...CGCCGGCCGGGGGACGAGCTCGGAGCAGCAGCCAG___AGTTTATTAACCACTTAACCTCTCAGAACTGAACAAAGACAACATTGTTCCTGGAACGCCCTCTTTTTAAAAAAG|ATCTCCAAAAAGAATACGTTAAACTGCTCCTTTCTGCATCGCCTCTGACAGCACTGAGTGCCAGCGTGGTCCCCAGCATAGTTCTGTGTAAGGACCAACTGTGGCTTGGAGAGAACCCCCTTGACAACACGAAGTTTAAACATGGTACCTGCAAGCAGTCAAGGGATGTGCTGACTACCCTTGGGGACTTGGACTGGCAAGCTAGCTCGAATGGAAGAAAATACTTGTCAGCTTCAATGAAGTTTGCCTTTGGTGGTGCAGCAGTGCCAAGCCTAGGAGAAAAGCAAGAG...CATTTAATTTAAAGTGCCTGCAAACTATATCCTGGGGCTAGGCATTAAAAGTTGAATACATGCATTAGCAAAAACACCACTGAAGTGCCACATGCAGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27414 ARPC4-TTLL3::SETD5 ENSG00000250151.9::ENSG00000168137.20 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4622 TRUE 1753 ARPC4-TTLL3 ENSG00000250151.9 protein_coding + + chr3:9793082-9835401:+ chr3:9804013:+ chr3:9834766-9877085:+ chr3:9845697:+ SETD5 ENSG00000168137.20 protein_coding + + chr3:9397615-9479240:+ chr3:9421479:+ chr3:9439299-9520924:+ chr3:9463163:+ chr3:9808151,chr3:9808150 chr3:9416197,chr3:9416192 NA NA chr3:9849835,chr3:9849834 chr3:9457881,chr3:9457876 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none ARP2/3_complex_20_kDa_subunit_(ARPC4)(100%)|SET_domain(100%) ARPC4(100%)|SET(100%) 1 1 3 1917 7 ENST00000424442.5 ENST00000670063.1 downstream upstream none ACTTCTTTATCCTTCGAAGGAAGCCTGTGGAG___GGGTATGATATCAGCTTTCTGATCACCAACTTCCACACAGAGCAGATGTACAAACACAAGTTGGTGGACTTTGTGATCCACTTCATGGAGGAGATTGACAAGGAGATCAGTGAGATGAAGCTGTCAGTCAATGCCCGTGCCCGCATTGTGGCTGAAGAGTTCCTTAAGAAT|GTAAAAGGCTGTTTGTCATGGTACAGCTACGGTGATTTTACTTGAGATATTTGACTTTGAGATGGAGATGAAGATAAGTATATAATGCAGCTGCCACATTCA FFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKN|vkgclswysygdft* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27415 ARPC4-TTLL3::SETD5 ENSG00000250151.9::ENSG00000168137.20 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4622 TRUE 1753 ARPC4-TTLL3 ENSG00000250151.9 protein_coding + + chr3:9793082-9835401:+ chr3:9804013:+ chr3:9834766-9877085:+ chr3:9845697:+ SETD5 ENSG00000168137.20 protein_coding + + chr3:9397615-9479240:+ chr3:9422723:+ chr3:9439299-9520924:+ chr3:9464407:+ chr3:9808151,chr3:9808150 chr3:9416197,chr3:9416192 NA NA chr3:9849835,chr3:9849834 chr3:9457881,chr3:9457876 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication medium none ARP2/3_complex_20_kDa_subunit_(ARPC4)(100%)|SET_domain(100%) ARPC4(100%)|SET(100%) 0 1 3 1917 13 ENST00000424442.5 ENST00000665872.1 downstream upstream none ACTTCTTTATCCTTCGAAGGAAGCCTGTGGAG___GGGTATGATATCAGCTTTCTGATCACCAACTTCCACACAGAGCAGATGTACAAACACAAGTTGGTGGACTTTGTGATCCACTTCATGGAGGAGATTGACAAGGAGATCAGTGAGA...CTGAAGAGTTCCTTAAGAAT|ACACTGAAATTGAGGAAGAGAGATTTTGGCGTTCTGTTGGTTTATGGAGAGAGTTGATCAGAGATTGCTCCTTGGCTGAGTTGCTGTCTGCATAGGCTGTTAACAATTGTTTCTCTGGCAGCAGATCTTGTTCATCAGGATTGCATCATTTCTG EEFLKN|tlklrkrdfgvllvyges* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27421 KLHL35::SPCS2 ENSG00000149243.17::ENSG00000118363.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KLHL35 ENSG00000149243.17 protein_coding - + chr11:75422394-75433203:- chr11:75430889:+ chr11:75133438-75144248:- chr11:75141934:+ SPCS2 ENSG00000118363.13 protein_coding + + chr11:74949261-74979033:+ chr11:74965034:+ chr11:74660306-74690078:+ chr11:74676079:+ chr11:75433034,chr11:75433024 chr11:74950983,chr11:74950975 NA NA chr11:75144079,chr11:75144069 chr11:74662028,chr11:74662020 NA NA antisense sense unknown intron CDS/splice-site duplication/3'-3' medium none |Microsomal_signal_peptidase_25_kDa_subunit_(SPC25)(100%) |SPC25(100%) 1 3 1 7 2478 unknown ENST00000263672.11 downstream upstream mismatches(2) GGGGAAGCCACCTGGCTGCGCCCGGGAGAGGCGACAGCCCTCATCCGTTTATTTCCTCcCTTGACCATTTGTTCAGCGACTCTCCCCTCCGTTCAGCATCCAGGTTCCTTA...TGCCCTGCCTACCCACTCAGACACAGTGCCCTTTTCGGTTCTTCAAACTTGCTAAGCGTTTTCCTATCGATATCTGCAG|TGGAAGATAGATGATAAGCCTGTAAAAATTGACAAGTGGGATGGATCAGCTGTGAAAAACTCTTTGGATGATTCTGCCAAAAAG___GgtCTTCTGGAAAAATACAAATATGTGGAGAATTTTGGTCTAATTGATGGTCGCCTCACCATCTGTACAATCTCCTGTTTCTTTGCCATAGTGGCTTTGATTTGGG...GCTGACCTTCATCAGTGcGAGAACAAAGCAGCAGCGGGAAGCCGAGTTCACAAAGTCCATTGCTAAGTTTTTTGACCACAGTGGGACACTGGTCATGGATG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27430 NVL::ENAH ENSG00000143748.18::ENSG00000154380.19 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4627 TRUE 1754 NVL ENSG00000143748.18 protein_coding - - chr1:224227334-224330189:- chr1:224303723:- chr1:224415036-224517891:- chr1:224491425:- ENAH ENSG00000154380.19 protein_coding - - chr1:225486765-225653142:- chr1:225530638:- chr1:225674467-225840844:- chr1:225718340:- chr1:224301480,chr1:224301489 chr1:225530815,chr1:225530821 NA NA chr1:224489182,chr1:224489191 chr1:225718517,chr1:225718523 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none ATPase_family_associated_with_various_cellular_activities_(AAA)(6%),Nucleolin_binding_domain(100%)|VASP_tetramerisation_domain(100%) AAA(0%),AAA_22(0%),AAA_5(0%),Nucleolin_bd(100%),RuvB_N(0%)|VASP_tetra(100%) 1 0 3 181 886 ENST00000482491.5 ENST00000366844.7 upstream downstream duplicates(2) AAGAAAG___CTAAAGCCAGGGGGTTAGAATTCCAGATCTCCAACGTGAAGTTTGAAGATGTGGGAGGCAATGATATGACATTAAAA___GAGGTCTGCAAGATGCTCATACACATGCGTCACCCGGAGGTGTACCACCACCTGGGCGTCGTGCCCCCTCGTGGAGTTCTCCTTCATGGACCACCAGGCTGTGGGAAGACATTACTTGCACATGCAATTGCTGGG|GGCCAACATTGCCTAGACAAAACTCACAACTACCTGCTCAAGTTCAAAATGGCCCATCCCAAGAAGAATTGGAAATTCAAAGAAG___ACAACTACAAGAACAGCAACGGCAAAAGGAGCTGGAGCGGGAAAGGCTGGAGCGAGAAAGAATGGAAAGAGAAAGGTTGGAGAGAGAGAGGTTAGAA KKAKARGLEFQISNVKFEDVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAG|gqhcldkthnyllkfkmahpkknwkfkednyknsngkrswsgkgwsekewkekgwrerg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27431 NVL::ENAH ENSG00000143748.18::ENSG00000154380.19 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4627 TRUE 1754 NVL ENSG00000143748.18 protein_coding - - chr1:224227334-224330189:- chr1:224305034:- chr1:224415036-224517891:- chr1:224492736:- ENAH ENSG00000154380.19 protein_coding - - chr1:225486765-225653142:- chr1:225530638:- chr1:225674467-225840844:- chr1:225718340:- chr1:224301480,chr1:224301489 chr1:225530815,chr1:225530821 NA NA chr1:224489182,chr1:224489191 chr1:225718517,chr1:225718523 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Nucleolin_binding_domain(100%)|VASP_tetramerisation_domain(100%) Nucleolin_bd(100%)|VASP_tetra(100%) 1 0 2 186 886 ENST00000482491.5 ENST00000366844.7 upstream downstream duplicates(1) CAAAACCCCAAGTGTAAAGAAAGACAGTTTTTTCTTGGACCTGTCATGTGAGAAAAGTAATCCTAAGAAGCCAATAACTGAGATACAG___GATTCAAAAGATTCTTCTCTTTTGGA...AAGCAAAAGGAAGAAAGAAGATCTTCAGGAAGTAGATGGAGAAATTGAAGCTGTCCTaCAAAAGAAAG|GGCCAACATTGCCTAGACAAAACTCACAACTAC...CCAAGAAGAATTGGAAATTCAAAGAAG___ACAACTACAAGAACAGCAACGGCAAAAGGAGCTGGAGCGGGAAAGGCTGGAGCGAGAAAGAATGGAAAGAGAAAGGTTGGAGAGAGAGAGGTTAGAA SKRKKEDLQEVDGEIEAVLQKK|gPTLPRQNSQL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27433 PHACTR3::ENSG00000287478 ENSG00000087495.17::ENSG00000287478.1 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4628 TRUE 1755 PHACTR3 ENSG00000087495.17 protein_coding + + chr20:59577509-59847711:+ chr20:59773453:+ chr20:58152564-58422766:+ chr20:58348508:+ ENSG00000287478 ENSG00000287478.1 lncRNA - - chr20:55607852-55744938:- chr20:55631200:- chr20:54182910-54319994:- chr20:54206258:- chr20:59773646,chr20:59773564,chr20:59773637 chr20:55723572,chr20:55723572,chr20:55723581 NA NA chr20:58348701,chr20:58348619,chr20:58348692 chr20:54298628,chr20:54298628,chr20:54298637 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion medium none none none 3 0 0 9 1 ENST00000361300.4 ENST00000661549.1 downstream downstream none TGGAGGACCCCGATCTGTACAGAGTGAACCACCCACTCCCAAGTCGGAGACGCTGACTTCAGAAGATGCCCAGCCCGGAAGCCCCTTGGCCACTGGGACGGACCAGGTCTCCCTGGACAAGCCACTGTCCTCAGCTGCCCACTTGGACGATGCAG___GCCAAGCCACACTCTTCCAAG...CCGGGGCCAGCTCTCCACACCCACGGGGTCTCCGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGCGTCATTGAGGAGCTGCACAGGGCGCTGGCCACGAAGCACCGCCAGGACAG|CGCTGAAGCTCATGATGTGAGGCAAATCCTCTCCGACTGCAATTCCTCCCTAACTACATTCCCCTGGACGCTTTCCTTTACCTGGC RGQLSTPTGSPHLTTVHRPLPPSRVIEELHRALATKHRQDs|aeahdvrqilsdcnsslttfpwtlsftw NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27434 PHACTR3::ENSG00000287478 ENSG00000087495.17::ENSG00000287478.1 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4628 TRUE 1755 PHACTR3 ENSG00000087495.17 protein_coding + + chr20:59577509-59847711:+ chr20:59773453:+ chr20:58152564-58422766:+ chr20:58348508:+ ENSG00000287478 ENSG00000287478.1 lncRNA - - chr20:55607852-55744938:- chr20:55668746:- chr20:54182910-54319994:- chr20:54243804:- chr20:59773646,chr20:59773564,chr20:59773637 chr20:55723572,chr20:55723572,chr20:55723581 NA NA chr20:58348701,chr20:58348619,chr20:58348692 chr20:54298628,chr20:54298628,chr20:54298637 NA NA sense sense out-of-frame CDS/splice-site intron inversion medium none none none 1 0 1 9 1 ENST00000359926.7 unknown downstream downstream none CTCCAGCATGAAGAGTGCCGACCCTTCCCTCCGGGGCCAGCTCTCCACACCCACGGGGTCTCCGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGCGTCATTGAGGAGCTGCACAGG...CTGGCCACGAAGCACCGCCAGGACAG|GCCTGAAGCTTAAAGAGGACAATGTCATTGCCTGGCTTACTATTGTACCCAGCAGACATACATAGCTGTGTGACC LATKHRQDr|pea* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27435 USP32::ENSG00000285939 ENSG00000170832.13::ENSG00000285939.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60391882:- chr17:58254688-58499831:- chr17:58469243:- ENSG00000285939 ENSG00000285939.2 lncRNA - + chr17:53276760-54365634:- chr17:53942007:+ chr17:51354121-52442995:- chr17:52019368:+ chr17:60365968,chr17:60365980 chr17:53893920,chr17:53893907 NA NA chr17:58443329,chr17:58443341 chr17:51971281,chr17:51971268 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none none none 1 2 0 306 20 ENST00000300896.9 unknown upstream upstream none CGACACCGTCACCGTCACCCAGGGACGCCGAGGAGAAGGCGGGAGGGGGGTGGGGGCGAGATCAGGCTCCGACCCCCCGCCGAGGGGATGAGGGGAGCATGGGTGCCAAGGAGTCACGGATCGGATTCCTCAGCTACGAGGAGGCGCTGAGGAGAG|TGCTTTTTGCAGTACAGTATCATAGCCACAGGACACTGTTGGAATGTCCTCCCAAAGTAAAGTGAAGATATTGGGAAGAAATTTACCAAACGTGTCAGATGTCTCCTCCCTACCAGTATTTTCAGCAAACTCTTTC...AGGTGGTGTGGCAAGCCCAAAGAAGCGAGTGACTTTTTCAAGAAAATCCCTTTGTGACACAGGGGCACTGGGAAATAACAGCTTCGCAACAGTTCC MGAKESRIGFLSYEEALRR|vlfavqyhshrtllecppkvk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27440 PTRH2::PRKCA ENSG00000141378.15::ENSG00000154229.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PTRH2 ENSG00000141378.15 protein_coding - - chr17:59674636-59707626:- chr17:59707371:- chr17:57751997-57784987:- chr17:57784732:- PRKCA ENSG00000154229.12 protein_coding + + chr17:66302613-66810743:+ chr17:66513336:+ chr17:64298731-64806861:+ chr17:64509454:+ chr17:59702728,chr17:59702731 chr17:66502504,chr17:66502501 NA NA chr17:57780089,chr17:57780092 chr17:64498622,chr17:64498619 NA NA sense sense unknown 5'UTR/splice-site intron inversion medium none |C2_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(50%),Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%) |C1_1(1%),C2(100%),PK_Tyr_Ser-Thr(100%),Pkinase(100%),Pkinase_C(100%) 0 3 0 894 10 ENST00000587935.1 unknown upstream upstream none GAAGGCGCGAGTGAGGAAAGGAGGTACTGTAG|TGAAGCCTGAGACCTGCCGTGTGATCGGACATCTTCCAAATAAAAG___AATGCTACATGAATGAAACATACCCACCCATCTGAGAACTCTCCTTCGCCCAACAGTGTGATGAGAAAGcTGTCTGTTGCAGATATCTACACTGCTGCATGCTAAGTGTGTCATCCcGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA TRUE hsa-mir-634 chr17:66787072-66787168:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C alpha type AGC PKC PKCa P17252 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27449 ASTN2::ENSG00000284977 ENSG00000148219.18::ENSG00000284977.3 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291364:- chr9:119185391-120177348:- chr9:120053643:- ENSG00000284977 ENSG00000284977.3 lncRNA + - chr9:117759390-118306252:+ chr9:117875013:- chr9:120521668-121068530:+ chr9:120637291:- chr9:117285838,chr9:117285844 chr9:117881659,chr9:117881662 NA NA chr9:120048117,chr9:120048123 chr9:120643937,chr9:120643940 NA NA sense antisense unknown CDS exon duplication/5'-5' low none none ASTN_1_2_N(20%)| 0 0 5 70 3 ENST00000313400.9 unknown upstream downstream none CTCTTTGTGCGTAACGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCCTGG___AGATGTCTGGCACAGCgGCGGACATCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGAGATTG...|...AGCCATGGCTGTGACAAACCTAAACTTCAtATGTCTTAACAGATCTGCATACATA___ATGCTTCGAAGGAAAATAAAGAAAACCAACAAAGACAATAAGCTGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27454 ASTN2::ENSG00000285082 ENSG00000148219.18::ENSG00000285082.3 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291369:- chr9:119185391-120177348:- chr9:120053648:- ENSG00000285082 ENSG00000285082.3 protein_coding + - chr9:117704157-118083691:+ chr9:117870089:- chr9:120466435-120845969:+ chr9:120632367:- chr9:117285838,chr9:117285844 chr9:117881659,chr9:117881662 NA NA chr9:120048117,chr9:120048123 chr9:120643937,chr9:120643940 NA NA sense antisense unknown CDS 3'UTR duplication/5'-5' low none none ASTN_1_2_N(20%)| 0 0 3 70 57 ENST00000313400.9 unknown upstream downstream none CTCTTTGTGCGTAACGAGCTGCCGGGGCGCATCGCGGTGCAGGACGACCTGGACAACACCGAGCTGCCCTTCTTCACCCTGG___AGATGTCTGGCcCAGC...TCTCGCTGGTGCACTGGAGACAGCAGTGGCTGGAGAATGGCACCTTGTACTTCCACGTCTCCATGAGCAGCTCCGGGCAGCTGGCCCAAGCCACCGCCCCCACTCTCCAGGAGCCCTCGGA...|...CCTGTGAAAGCAAGAGGGTATAAGCAGAATTGTGCAGAGGAAGAAGGTAAACCCCcATGTAGGCCCAACTGTGCATCTACTGATGTGGCAAAGAGCAAAGT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27458 SEPTIN4-AS1::BCAS3 ENSG00000264672.6::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SEPTIN4-AS1 ENSG00000264672.6 lncRNA + + chr17:58519837-58557799:+ chr17:58544671:+ chr17:56597198-56635160:+ chr17:56622032:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60709219:+ chr17:58754814-59470199:+ chr17:58786580:+ chr17:58544875,chr17:58544873 chr17:60702062,chr17:60702057 NA NA chr17:56622236,chr17:56622234 chr17:58779423,chr17:58779418 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion low none |Breast_carcinoma_amplified_sequence_3_(100%) |BCAS3(100%),WD40(100%) 0 1 1 2 62 ENST00000580589.5 ENST00000407086.8 downstream upstream none CTCCAGACCCTCCTTTACTCTCCCGAGATTCTAGAAATTCTCAGGACTCATCCAGAGAAGGAATCAGCCAGAAGATCCTATGAAGACAAGATCAAACCAAACACGCTGTGTTCGCCCCAGTTTTAATAAG|ATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAgTGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATtCCT___ATCAGTGGcGAAGCACAAGAGCTCTTCTCTGTTCGACATGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27479 DNAJC8::GPR158 ENSG00000126698.11::ENSG00000151025.11 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJC8 ENSG00000126698.11 protein_coding - - chr1:28199456-28233029:- chr1:28228922:- chr1:28525967-28559540:- chr1:28555433:- GPR158 ENSG00000151025.11 protein_coding + - chr10:25174802-25602229:+ chr10:25272668:- chr10:25463731-25891158:+ chr10:25561597:- chr1:28219288,chr1:28219290 chr10:25314715,chr10:25314714 NA NA chr1:28545799,chr1:28545801 chr10:25603644,chr10:25603643 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' high none DnaJ_domain(6%)| DnaJ(0%)| 7 6 21 525 47 ENST00000263697.6 unknown upstream downstream duplicates(1),low_entropy(1),mismatches(3),multimappers(1) GGGAAATGGCGGCTTCAGGAGAGAGCGGGACTTCAGGCGGCGGAGGCAGCACCGAGGAAGCATTTATGACCTTCTACAGTGAG___GTGAAACAAATAGAGAAGAGAGACTCGGTTCTAACTTCGAAAAATCAGATTGAAAGACTGACCCGTCCTGGTTCCTCTTACTTCAATTTGAACCCATTTGAG|GAGGACCAACTTCTGTCTTGATGAATGAATCTCCTGGGAGAAGCAATCCATTTTTATAAACATTCTCAGAAG___ACAATTTCAACTATACCAGCTCTACTTCCATATTCAGTTCCCCTGCACATCGGAGGAAAAAAAAATCAAACTGTTCAGGTGAAACAGAAGACCATCTATTCTTCAGTAACCAAAGAATCTA MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFE|edqlls* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27490 DBP::AKT2 ENSG00000105516.11::ENSG00000105221.18 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA DBP ENSG00000105516.11 protein_coding - - chr19:48630030-48637379:- chr19:48635580:- chr19:49133287-49140636:- chr19:49138837:- AKT2 ENSG00000105221.18 protein_coding - - chr19:40230317-40285536:- chr19:40233951:- chr19:40736224-40791443:- chr19:40739858:- chr19:48634437,chr19:48634439 chr19:40234306,chr19:40234305 NA NA chr19:49137694,chr19:49137696 chr19:40740213,chr19:40740212 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none |Protein_kinase_C_terminal_domain(29%) |Pkinase_C(4%) 1 6 1 44 748 ENST00000222122.10 ENST00000424901.5 upstream downstream none CCCTCCCCAGGGCCGGGTTCGTGCGGCTCGGCTTCCCCCCGCTCCTCTCCTGGGCACGCCCCCGCCCGGGCTGCCCTCGGGACCGCCAGCGGCCACCGCGCAG|ATGACAGCCTGGGCTTACTGGAGCTGGACCAGCGGACCCACTTCCCCCAGTTCTCCTACTCGGCCAGCATCCGCGAGTGAGCAGTCTGCCCACGCAGAGGACGCACGCTCGCTGCCATCACCGCTGGGTGGTTTTTTaCCCCTAACTTTTTACTTAGCCTTTTTGGTTTGTGTCCCCACCCCCgCCTCCTCACCCCCTTTCCAGTTCTTCTTCAGGCCCCTCCCAGACGCACCCCAGCGGCCCCTGCAGCC PSPGPGSCGSASPRSSPGHAPARAALGTASGHRA|dDSLGLLELDQRTHFPQFSYSASIRE* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE RAC-beta serine/threonine-protein kinase AGC Akt P31751 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 2 1 Yes ovarian, pancreatic epithelial oncogene amplification 27491 KSR2::VSIG10 ENSG00000171435.15::ENSG00000176834.14 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KSR2 ENSG00000171435.15 protein_coding - - chr12:117453012-117968990:- chr12:117968076:- chr12:117890817-118406795:- chr12:118405881:- VSIG10 ENSG00000176834.14 protein_coding - - chr12:118063593-118136026:- chr12:118073992:- chr12:118501398-118573831:- chr12:118511797:- chr12:117964881,chr12:117964889 chr12:118076065,chr12:118076070 NA NA chr12:118402686,chr12:118402694 chr12:118513870,chr12:118513875 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none SAM_like_domain_present_in_kinase_suppressor_RAS_1(28%)|Immunoglobulin_domain(51%) SAM_KSR1(0%)|I-set(100%),Ig_3(21%),ig(43%) 4 0 1 20 151 ENST00000339824.7 ENST00000359236.10 upstream downstream none GGAAAACATGACGAAAAGCGAGGAGCAGCAGCCTCTGAGTTTGCAAAAAGCCTTACAGCAGTGCGAACTGGTCCAAAACATGATAGACTTGAGCATCTCCAACCTGG...TAGGACCAAATGTGCTACCTCCAACGACCTCACACAAAAAGAAATCCGGACCCTGGAG|GGGGTCCCTCCCTTCTCTCTGAGCCCATGAAGACTTGCTTCACTGGGGGCAATGTGACGCTTACATGCCAGG RTKCATSNDLTQKEIRTLE|gvppfslsp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Kinase suppressor of Ras 2 TKL RAF Q6VAB6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27507 ENSG00000291214::KPNA2 ENSG00000291214.1::ENSG00000182481.10 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE TRUE FALSE NA TRUE 4639 TRUE 1756 ENSG00000291214 ENSG00000291214.1 lncRNA + + chr17:68101871-68161227:+ chr17:68125480:+ chr17:66098012-66157368:+ chr17:66121621:+ KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68037110:+ chr17:66031752-66043480:+ chr17:66033226:+ chr17:68140853,chr17:68140852 chr17:68035799,chr17:68035795 NA NA chr17:66136994,chr17:66136993 chr17:66031915,chr17:66031911 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication medium none |Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%),Importin_beta_binding_domain(100%) |Arm(100%),Arm_3(100%),HEAT_EZ(100%),IBB(100%) 2 2 0 250 2940 ENST00000692407.1 ENST00000676902.1 downstream upstream mismatches(2) GGACCTATTTAGACAACGCCTTACACACTGGAGAAGGATGATACTTTGTGACTCTAATAAATCTACCAGACAATACTTCTCTCTTTTGGCTGTCTCCTTCCTCTCCAGGGTGATGACAACTCCGT...GGAGATTATACATCTCTCATCATTTCAGCAACAAGGAAATAAATTAGTGGCAGAGTAAGGGTGACTTG|CTTTCTCCCTTTGTCTCATAACCATGTCCACCAACGAGAATGCTAATACACCAGCTGCCCGTCTTCACAGATTCAAGAACAAGGGAAAAGACAGTACA___GAAATGAGGCGTCGCAGAATAGAGGTCAATGTGGAGCTGAGGAAAGCTAAGAAGGATGACCAGATGCTGAAGAGGAGAAATGTAAGCTCATTTCCTGATGATGCTACTTCTCCGCTGCAGGAAAACCGCAACAACCAG___GGCACTGTAAATTGGTCTGTTGATGACATTGTCAAAGGCATAAATAGCAGCAATGTGGAAAATCAGCTCCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27508 ENSG00000291214::KPNA2 ENSG00000291214.1::ENSG00000182481.10 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE TRUE FALSE NA TRUE 4639 TRUE 1756 ENSG00000291214 ENSG00000291214.1 lncRNA + + chr17:68101871-68161227:+ chr17:68114525:+ chr17:66098012-66157368:+ chr17:66110666:+ KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68037110:+ chr17:66031752-66043480:+ chr17:66033226:+ chr17:68140853,chr17:68140852 chr17:68035799,chr17:68035795 NA NA chr17:66136994,chr17:66136993 chr17:66031915,chr17:66031911 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site duplication low none |Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%),Importin_beta_binding_domain(100%) |Arm(100%),Arm_3(100%),HEAT_EZ(100%),IBB(100%) 0 0 0 221 2940 ENST00000690974.1 ENST00000676902.1 downstream upstream mismatches(2) AAGGCCTTGACTACGGAGGGGTTGCCAG|CTTTCTCCCTTTGTCTCATAACCATGTCCACCAACGAGAATGCTAATACACCAGCTGCCCGTCTTCACAGATTCAAGAACAAGGGAAAAGACAGTACA___GAAATGcGGCGTCGCAGAATAGAGGcCAATGTGGA...CTGcGGAAAGCTAAGAAaGATGACCAGATGCTGAAGAGGAGAAATGTAAGCTCATTTCCcaATGATGCTACTTCTCCGCTGCAGGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27516 MAPK8IP3::JPT2 ENSG00000138834.15::ENSG00000206053.13 BT483 SRR8616196 SRR8639206 BREAST carcinoma (ductal_carcinoma\, medullary) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA MAPK8IP3 ENSG00000138834.15 protein_coding + + chr16:1706166-1770351:+ chr16:1729578:+ chr16:1756167-1820352:+ chr16:1779579:+ JPT2 ENSG00000206053.13 protein_coding + + chr16:1678256-1702280:+ chr16:1697812:+ chr16:1728257-1752281:+ chr16:1747813:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none JNK_SAPK-associated_protein-1(100%)| Jnk-SapK_ap_N(100%)| 2 1 1 190 1802 ENST00000610761.2 ENST00000248098.8 downstream upstream none CGGGAGTCGGAGATGAAGAAGGAGTACAATGCCCTGCACCAGCGGCACACAGAG___ATGATACAGACCTACGTGGAGCACATTGAGAGGTCCAAGATGCAGCAGGTCGGAGGAAACAGCCAGACCGAGAGCAGCCTGCCGGGGCGGAG|GATCATGTTTTCTTATGTGAAGGAGAAGAACCAAAATCGGATCTTAAAG___CTGCAAGGAGCA...GGCCGCGGCCTCGCTCTCACAACAAGGTCCTGAACCCACCGGGAGGCAAATCCAGCATCTCCTTCTACTAAGAGAAGCCACTGCTCCACCCGGAGCCAGAC RESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQTESSLPGRr|imfsyvkeknqnrilklqg NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27527 ARHGAP8::PRR5 ENSG00000241484.10::ENSG00000186654.21 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4641 TRUE 1757 ARHGAP8 ENSG00000241484.10 protein_coding + + chr22:44752558-44862788:+ chr22:44786606:+ chr22:45148438-45258668:+ chr22:45182486:+ PRR5 ENSG00000186654.21 protein_coding + + chr22:44668547-44737681:+ chr22:44714591:+ chr22:45064427-45133561:+ chr22:45110471:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |HbrB-like(94%) CRAL_TRIO(0%)|HbrB(59%) 10 21 47 355 275 ENST00000389774.6 ENST00000611394.4 downstream upstream duplicates(16),low_entropy(1),mismatches(18),multimappers(6) ACGCAGGTGGGGGCCGGCGGGGTCCGTGGCCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|CATCCACAACGGGGTGATCGCCGTCTTCCAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAACGAGGGCGTCCG___GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGACTTCTTCTTC MAGQDPALSTSHPFYDVARHGILQVA|asttg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27528 ARHGAP8::PRR5 ENSG00000241484.10::ENSG00000186654.21 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4641 TRUE 1757 ARHGAP8 ENSG00000241484.10 protein_coding + + chr22:44752558-44862788:+ chr22:44786606:+ chr22:45148438-45258668:+ chr22:45182486:+ PRR5 ENSG00000186654.21 protein_coding + + chr22:44668547-44737681:+ chr22:44725244:+ chr22:45064427-45133561:+ chr22:45121124:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none |HbrB-like(67%) CRAL_TRIO(0%)|HbrB(23%) 0 2 22 355 468 ENST00000389774.6 ENST00000611394.4 downstream upstream duplicates(2),mismatches(6),multimappers(2) GGCGGGGTCCGTGGCCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGAC MAGQDPALSTSHPFYDVARHGILQVA|gsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27530 BRCA2::N4BP2L2 ENSG00000139618.18::ENSG00000244754.9 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2551 TRUE 4642 TRUE 1758 BRCA2 ENSG00000139618.18 protein_coding + + chr13:32315086-32400268:+ chr13:32346896:+ chr13:32889223-32974405:+ chr13:32921033:+ N4BP2L2 ENSG00000244754.9 protein_coding - - chr13:32432417-32538885:- chr13:32444126:- chr13:33006554-33113022:- chr13:33018263:- chr13:32352053 chr13:32452486 NA NA chr13:32926190 chr13:33026623 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none BRCA2_repeat(100%)| BRCA2(100%)| 6 11 15 125 34 ENST00000544455.6 ENST00000357505.10 downstream downstream duplicates(4),mismatches(1) TTGACAGGATAATAGAAAATCAAGAAAAATCCTTAAAGGCTTCAAAAAGCACTCCAGATG___GCACAATAAAAGATCGAAGATTGTTTATGCATCATGTTTCTTTAGAGCCGATTACCTGTGTACCCTTTCG|AGAAAGAGTTTTGAAGAAAACTGGGCATAGGCTCAGCAAAACCAAACAGAAGAGGAACAGAAAAAGAAACAAAAAGCAGAACAGTCAGAATAGAATCATGGAGGAAAACTCATTAGAATTCTTAAGTGATCTTACACCGGGAGATCAGGACCCATCTCAGAGTGAAGAGGAAGACATTGAAAAGACCAGAAGAGAATCAGAATATCCCTTCATTGATGGTCTACAAAATGAAGTCGGAGATTTTGTGACTGGATATAAAGAAAAAAGATGGAAAAA DRIIENQEKSLKASKSTPDGTIKDRRLFMHHVSLEPITCVPFr|ERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE familial breast/ovarian cancer gene 2 1 Yes breast, ovarian, pancreatic breast, ovarian, pancreatic, leukaemia (FANCB, FANCD1) hereditary breast/ovarian cancer leukaemia_lymphoma, epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 27531 BRCA2::N4BP2L2 ENSG00000139618.18::ENSG00000244754.9 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4642 TRUE 1758 BRCA2 ENSG00000139618.18 protein_coding + + chr13:32315086-32400268:+ chr13:32346896:+ chr13:32889223-32974405:+ chr13:32921033:+ N4BP2L2 ENSG00000244754.9 protein_coding - - chr13:32432417-32538885:- chr13:32446480:- chr13:33006554-33113022:- chr13:33020617:- chr13:32352053 chr13:32452486 NA NA chr13:32926190 chr13:33026623 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none BRCA2_repeat(100%)| BRCA2(100%)| 0 1 15 125 1 ENST00000544455.6 ENST00000380121.7 downstream downstream duplicates(2) GAAACTTATTAAATGAATTTGACAGGATAATAGAAAATCAAGAAAAATCCTTAAAGGCTTCAAAAAGCACTCCAGATG___GCACAATAAAAGATCGAAGATTGTTTATGCATCATGTTTCTTTAGAGCCGATTACCTGTGTACCCTTTCG|GATGGTTCACATTTGAGTAAAGACAGGGGAGTTTGTTTTCAGAATGACATACTAGTCTGCAGGATGAATTTCATAACTGACATTGCACCTTGGACTGCAACTAGGACTTTCACTGGAATCAG___AGAAAGAGTTTTGAA NLLNEFDRIIENQEKSLKASKSTPDGTIKDRRLFMHHVSLEPITCVPFr|mvhi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE familial breast/ovarian cancer gene 2 1 Yes breast, ovarian, pancreatic breast, ovarian, pancreatic, leukaemia (FANCB, FANCD1) hereditary breast/ovarian cancer leukaemia_lymphoma, epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 27532 N4BP2L2::BRCA2 ENSG00000244754.9::ENSG00000139618.18 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4643 TRUE 1759 N4BP2L2 ENSG00000244754.9 protein_coding - - chr13:32432417-32538885:- chr13:32477887:- chr13:33006554-33113022:- chr13:33052024:- BRCA2 ENSG00000139618.18 protein_coding + + chr13:32315086-32400268:+ chr13:32370402:+ chr13:32889223-32974405:+ chr13:32944539:+ chr13:32471440,chr13:32471443 chr13:32367425,chr13:32367422 NA NA chr13:33045577,chr13:33045580 chr13:32941562,chr13:32941559 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion high none AAA_domain(100%)|BRCA2__oligonucleotide/oligosaccharide-binding__domain_1(13%),BRCA2__oligonucleotide/oligosaccharide-binding__domain_3(100%),Tower(100%) AAA_33(100%),Zeta_toxin(100%)|BRCA-2_OB1(0%),BRCA-2_OB3(100%),BRCA-2_helical(0%),Tower(100%) 0 1 2 3 100 ENST00000503296.6 ENST00000544455.6 upstream upstream none CTGACACATTGATCACTTTCTCAACCTTTGATCTCTTGAGAG|ATTTCTGCTAACAGTACTCGGCCTGCTCGCTGGTATACCAAACTTGGATTCTTTCCTGACCCTAGACCTTTTCCTCTGCCCTTATCATCGCTTTTCAGTGATGGAGGAAATGTTGGTTGTGTTGATGTAATTATTCAAAGAGCATACCCTATACAG___TGGATGGAGAAGACATCATCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE familial breast/ovarian cancer gene 2 1 Yes breast, ovarian, pancreatic breast, ovarian, pancreatic, leukaemia (FANCB, FANCD1) hereditary breast/ovarian cancer leukaemia_lymphoma, epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site 27533 N4BP2L2::BRCA2 ENSG00000244754.9::ENSG00000139618.18 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4643 TRUE 1759 N4BP2L2 ENSG00000244754.9 protein_coding - - chr13:32432417-32538885:- chr13:32480590:- chr13:33006554-33113022:- chr13:33054727:- BRCA2 ENSG00000139618.18 protein_coding + + chr13:32315086-32400268:+ chr13:32370402:+ chr13:32889223-32974405:+ chr13:32944539:+ chr13:32471440,chr13:32471443 chr13:32367425,chr13:32367422 NA NA chr13:33045577,chr13:33045580 chr13:32941562,chr13:32941559 NA NA sense sense unknown exon/splice-site CDS/splice-site inversion medium none AAA_domain(100%)|BRCA2__oligonucleotide/oligosaccharide-binding__domain_1(13%),BRCA2__oligonucleotide/oligosaccharide-binding__domain_3(100%),Tower(100%) AAA_33(100%),Zeta_toxin(100%)|BRCA-2_OB1(0%),BRCA-2_OB3(100%),BRCA-2_helical(0%),Tower(100%) 0 1 1 9 100 ENST00000674161.1 ENST00000544455.6 upstream upstream none GAAGAAATATCAAATGTTTCCTAGTAAGACAGCAACTCAG|ATTTCTGCTAACAGTACTCGGCCTGCTCGCTGGTATACCAAACTTGGATTCTTTCCTGACCCTAGACCTTTTCCTCTGCCCTTATCATCGCTTTTC...AAAATATGTGGAGGCCCAACAAAAGAGACTAGAAGCCTTATTCACTAAAATTCAGGAGGAATTTGAAGAACATGAAG___AAAACACAACAAAACCATATTTAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE familial breast/ovarian cancer gene 2 1 Yes breast, ovarian, pancreatic breast, ovarian, pancreatic, leukaemia (FANCB, FANCD1) hereditary breast/ovarian cancer leukaemia_lymphoma, epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site 27537 PEX14::PTPN14 ENSG00000142655.13::ENSG00000152104.12 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE TRUE 2552 FALSE NA FALSE NA PEX14 ENSG00000142655.13 protein_coding + + chr1:10472288-10630758:+ chr1:10495321:+ chr1:10532345-10690815:+ chr1:10555378:+ PTPN14 ENSG00000152104.12 protein_coding - - chr1:214348700-214552449:- chr1:214358050:- chr1:214522043-214725792:- chr1:214531393:- chr1:10504704 chr1:214362847 NA NA chr1:10564761 chr1:214536190 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Pex14_N-terminal_domain(9%)|Protein-tyrosine_phosphatase(13%) CIDE-N(100%),Pex14_N(0%)|Y_phosphatase(0%) 0 19 3 231 316 ENST00000356607.9 ENST00000366956.10 downstream downstream duplicates(1),low_entropy(1),mismatches(1) TGGCGTCCTCGGAGCAGGCAGAGCAGCCGAGCCAG___CCAAGCTCTACTCCAGGAAGTGAAAATGTGCTGCCTCGAGAGCCGCTG|AAGGTGGAAGTGCCCATGATGCTGAGGCTCCTCAGGGAGCAGAGGATGTTCATGATCCAGACTATCGCTCAGTACAAGTTTGTCTACCAAGTCCTCATCCAGTTCCTCCAAAACTCCAGACTCATTTAATCACCCCAATCCAGCTCCTGGAGGAGGGACCCAGCTCCATCGCGCTGGAGGAGAGTCACCTCCAGACAACATCTGCTCCCCCCACAGGGGTGCAGGTGGCTGGCAGCAAACAGGCTCTCTGAAGACAGTAGCCAAGATTATTCACACATACCATGTATTA ASSEQAEQPSQPSSTPGSENVLPREPL|KVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27544 PRR5-ARHGAP8::PRR5 ENSG00000248405.10::ENSG00000186654.21 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4646 TRUE 1760 PRR5-ARHGAP8 ENSG00000248405.10 protein_coding + + chr22:44702233-44862706:+ chr22:44786606:+ chr22:45098113-45258586:+ chr22:45182486:+ PRR5 ENSG00000186654.21 protein_coding + + chr22:44668547-44737681:+ chr22:44714591:+ chr22:45064427-45133561:+ chr22:45110471:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none HbrB-like(100%)|HbrB-like(94%) CRAL_TRIO(0%),HbrB(100%)|HbrB(59%) 10 21 24 355 275 ENST00000361473.9 ENST00000611394.4 downstream upstream duplicates(15),low_entropy(1),mismatches(12),multimappers(4) ACGCAGGTGGGGGCCGGCGGGGTCCGTGGCCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|CATCCACAACGGGGTGATCGCCGTCTTCCAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAACGAGGGCGTCCG___GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGACTTCTTCTTC agggrrgpwpELQRDKAAAAAVLGAVRKRPSVVPMAGQDPALSTSHPFYDVARHGILQVA|asttg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27545 PRR5-ARHGAP8::PRR5 ENSG00000248405.10::ENSG00000186654.21 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4646 TRUE 1760 PRR5-ARHGAP8 ENSG00000248405.10 protein_coding + + chr22:44702233-44862706:+ chr22:44786606:+ chr22:45098113-45258586:+ chr22:45182486:+ PRR5 ENSG00000186654.21 protein_coding + + chr22:44668547-44737681:+ chr22:44725244:+ chr22:45064427-45133561:+ chr22:45121124:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none HbrB-like(100%)|HbrB-like(67%) CRAL_TRIO(0%),HbrB(100%)|HbrB(23%) 0 2 5 355 468 ENST00000361473.9 ENST00000611394.4 downstream upstream duplicates(2),mismatches(2) CCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGAC pELQRDKAAAAAVLGAVRKRPSVVPMAGQDPALSTSHPFYDVARHGILQVA|gsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27546 ARHGAP8::PRR5-ARHGAP8 ENSG00000241484.10::ENSG00000248405.10 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4647 TRUE 1761 ARHGAP8 ENSG00000241484.10 protein_coding + + chr22:44752558-44862788:+ chr22:44786606:+ chr22:45148438-45258668:+ chr22:45182486:+ PRR5-ARHGAP8 ENSG00000248405.10 protein_coding + + chr22:44702233-44862706:+ chr22:44714591:+ chr22:45098113-45258586:+ chr22:45110471:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Divergent_CRAL/TRIO_domain(100%),HbrB-like(94%),RhoGAP_domain(100%) CRAL_TRIO(0%)|CRAL_TRIO(100%),CRAL_TRIO_2(100%),HbrB(59%),RhoGAP(100%) 10 21 24 355 275 ENST00000389774.6 ENST00000352766.11 downstream upstream duplicates(15),low_entropy(1),mismatches(12),multimappers(4) ACGCAGGTGGGGGCCGGCGGGGTCCGTGGCCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|CATCCACAACGGGGTGATCGCCGTCTTCCAGCGCAAGGGGCTGCCCGACCAGGAGCTCTTCAGCCTCAACGAGGGCGTCCG___GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGACTTCTTCTTC MAGQDPALSTSHPFYDVARHGILQVA|asttg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27547 ARHGAP8::PRR5-ARHGAP8 ENSG00000241484.10::ENSG00000248405.10 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4647 TRUE 1761 ARHGAP8 ENSG00000241484.10 protein_coding + + chr22:44752558-44862788:+ chr22:44786606:+ chr22:45148438-45258668:+ chr22:45182486:+ PRR5-ARHGAP8 ENSG00000248405.10 protein_coding + + chr22:44702233-44862706:+ chr22:44725244:+ chr22:45098113-45258586:+ chr22:45121124:+ chr22:44792228,chr22:44792221 chr22:44708945,chr22:44708935 NA NA chr22:45188108,chr22:45188101 chr22:45104825,chr22:45104815 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none |Divergent_CRAL/TRIO_domain(100%),HbrB-like(67%),RhoGAP_domain(100%) CRAL_TRIO(0%)|CRAL_TRIO(100%),CRAL_TRIO_2(100%),HbrB(23%),RhoGAP(100%) 0 2 5 355 468 ENST00000389774.6 ENST00000352766.11 downstream upstream duplicates(2),mismatches(2) CCAG___AGCTGCAGAGAGACAAGGCGGCGGCGGCTGCTGTGCTGGGTGCAGTGAGGAAGAGGCCCTCGGTGGTGCCCATGGCTGGCCAGGATCCTGCGCTGAGCACGAGTCACCCGTTCTACGACGTGGCCAGACATGGCATTCTGCAGGTGGCAG|GCAGCTGTTGAAGACAGAGCTGGGGTCCTTCTTCACGGAGTACCTGCAG___AACCAGCTGCTGACAAAAGGCATGGTGATCCTTCGGGACAAGATTCGCTTCTATGAGG___GACAGAAGCTGCTGGACTCACTGGCAGAGACCTGGGAC MAGQDPALSTSHPFYDVARHGILQVA|gsc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27579 RNF19B::S100PBP ENSG00000116514.17::ENSG00000116497.18 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RNF19B ENSG00000116514.17 protein_coding - - chr1:32936445-32964809:- chr1:32944019:- chr1:33402046-33430410:- chr1:33409620:- S100PBP ENSG00000116497.18 protein_coding + - chr1:32816767-32858875:+ chr1:32826219:- chr1:33282368-33324476:+ chr1:33291820:- chr1:32943142 chr1:32857421 NA NA chr1:33408743 chr1:33323022 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/read-through/5'-5' high none IBR_domain__a_half_RING-finger_domain(100%)| IBR(100%)| 17 19 26 201 238 ENST00000235150.5 unknown upstream downstream duplicates(19),low_entropy(1),mismatches(5) TGTTTATGTTGGAAGGAAG___ATTCACAGCAGGTATGAGGGAAGGAAAACCTCCAAACACAAGAGGAATTTGGCTATCACTGGAGGAGTGACTTTGTCGGTCATTGCATCCCCAGTTATTGCTGCAGTTAGTGTTG___GTATTGGTGTCCCCATTATGCTGGCATATGTTTATGGGGTTGTGCCCATTTCTCTTTGTCGTGGAGGCGGCTGTGGAGTTAGCACAGCCAACGGAAAAGGAGTGAAAATTGAATTTGATGAAGATGATGGTCCAATCACAG|CTCCAGCAAGGAGTCATCCAATCCATCCTCATCCAAGGAATCCCAAGAAAATGGGGCACCGTCTTTAGGCAAGAGAGAGGTACCAGAAGACTGTTCAGAGGGCACCCGTGAGCACATCATTTCTGGAGAAATAAGAGACAATTTCACTGAGGAAGAGAAAATAACCTTATACCAACTCCAGTCCACTATATGTGGGTAATGTTCTAGTATTTCAAAATCTTTGCACTGTGACTTGTAGCATAAGAAATAATTTTAAGATATTTA VYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPIT|aparshpihphprnpkkmghrl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27580 VTI1A::TECTB ENSG00000151532.15::ENSG00000119913.6 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE TRUE 2553 FALSE NA FALSE NA VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112447467:+ chr10:114206756-114578503:+ chr10:114207225:+ TECTB ENSG00000119913.6 protein_coding + + chr10:112283400-112305038:+ chr10:112293738:+ chr10:114043158-114064796:+ chr10:114053496:+ chr10:112447674,chr10:112447670 chr10:112293522,chr10:112293515 NA NA chr10:114207432,chr10:114207428 chr10:114053280,chr10:114053273 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Vesicle_transport_v-SNARE_protein_N-terminus(25%)|Zona_pellucida-like_domain(45%) V-SNARE(0%)|Zona_pellucida(38%) 4 4 11 108 19 ENST00000705995.1 ENST00000646139.2 downstream upstream duplicates(3),mismatches(1) GTTGAGAGCTGTCCCCGGTTCTCCGTTCTGCTCTCGGGGGCACCTTCCGGGGTTCCTAAGCCGCGGGGCCCCTCGCTGCCCCTCGAGGCCCTTTCCCTGACCTAGGCTTTGGCCTGGGCTACTCGTTCCGGAGCCGCCATGTCGTCCGACTTCGAAGGTTACGAGCAGGACTTCGCGGTGCTCACTGCAGAGATCACCAGCAAGATTGCGAGGGTCCCACGACTCCCGCCTG|AATGCCAAGTTCTCCATCAAGAAAGAAGCTCCCTTTGTCCTGGAGGCATCgGAAATCGGTTCAGATCTGTTTGCAGGAGTGGAAGCCAAAGGGTTAAGCATTAG___GTTTAAAGTGGTCTTGAACAGCTGTTGGGCCACCCCCTCGGCTGACTTCATGTATCCCTTGCAGTGGCAGCTGA MSSDFEGYEQDFAVLTAEITSKIARVPRLPP|ecqvlhqersslcpggignrfrsvcrsgsqrvkh* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-6715a chr10:112299612-112299690:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27581 CTCF::ENSG00000260223 ENSG00000102974.16::ENSG00000260223.2 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4649 TRUE 1762 CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67621591:+ chr16:67596370-67673080:+ chr16:67655494:+ ENSG00000260223 ENSG00000260223.2 lncRNA - - chr16:76107283-76147806:- chr16:76121920:- chr16:76141181-76181704:- chr16:76155818:- chr16:67623384,chr16:67623385 chr16:76131652,chr16:76131652 NA NA chr16:67657287,chr16:67657288 chr16:76165550,chr16:76165550 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(80%)| zf-C2H2(4%),zf-H2C2_5(100%),zf-met(100%)| 2 4 9 104 69 ENST00000646076.1 ENST00000564561.1 downstream downstream duplicates(3),mismatches(1) CCGTTTCAGTGCAGTTTGTGCAGTTATGCCAGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACCCATTCAG___GGGAAAAGCCTTATGAATGTTATATTTGTCATGCTCGGTTTACCCAAAGTGGTACCATGAAGATGCACATTTTACAGAAGCACACAGAAAATGTGGCCAAATTTCACTGTCCCCACTGTGACACAGTCATAGCCCGAAAAAGTGATTTGG|CATTTTCCAAGGAACAGAAGAAGTCTATTTTTAACAAAGTCTGTAAGCTCTGCCAGAAGGAGACGCTTTGCCTCTTGGAGGAAGCCGCTTCACTGAGCACCCAGCAGTCATGAATCATTCCCCTTCAATACACAAGCTGTGCTCCTGAAGTTTACCAAAG___GGGCAGAGGAGATGCTGGTCAGCCAGAGGAT PFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL|afskeqkksifnkvcklcqketlclleeaaslstqqs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 27582 CTCF::ENSG00000260223 ENSG00000102974.16::ENSG00000260223.2 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4649 TRUE 1762 CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67621591:+ chr16:67596370-67673080:+ chr16:67655494:+ ENSG00000260223 ENSG00000260223.2 lncRNA - - chr16:76107283-76147806:- chr16:76108342:- chr16:76141181-76181704:- chr16:76142240:- chr16:67623384,chr16:67623385 chr16:76131652,chr16:76131652 NA NA chr16:67657287,chr16:67657288 chr16:76165550,chr16:76165550 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none C2H2-type_zinc-finger_domain(100%),Zinc_finger__C2H2_type(80%)| zf-C2H2(4%),zf-H2C2_5(100%),zf-met(100%)| 3 2 2 104 134 ENST00000646076.1 ENST00000564561.1 downstream downstream duplicates(2) CACGAGAAGCCATTCAAGTGTTCCATGTGCGATTACGCCAGTGTAGAA___GTCAGCAAATTAAAACGTCACATTCGCTCTCATACTGGAGAGCGTCCGTTTCAGTGCAGTTTGTGCAGTTATGCCAGCAGGGACACATACAAGCTGAAAAGGCACATGAGAACCCATTCAG___GGGAAAAGCCTTATGAATGTTATATTTGTCATGCTCGGTTTACCCAAAGTGGTACCATGAAGATGCACATTTTACAGAAGCACACAGAAAATGTGGCCAAATTTCACTGTCCCCACTGTGACACAGTCATAGCCCGAAAAAGTGATTTGG|GGGCAGAGGAGATGCTGGTCAGCCAGAGGATACAGGGGAAGAACAGAAAAGGCATAACAAGAGGGAAGAAG...AAGTTTTAGCTCTCTCTTGTCCCATATCCAGCTTACTATGTAAGAAAATTACACAAGTTTTTTTCAATTTCATTTTTTCTCTATGTCAGTGAGACACCCAGTTTTTCTTGTCAATGACAGCTCCCTCATGGTG HEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL|gaeemlvsqriqgknrkgitrgk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 27592 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4652 TRUE 1763 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57814459:+ chr19:58281023-58331307:+ chr19:58325827:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense unknown 5'UTR/splice-site CDS duplication low none none none 1 1 0 104 7 ENST00000651253.2 ENST00000598885.5 downstream upstream duplicates(1) CGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTG...TTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GCGCCTGTGGACCCCAGGTTCCATCCTCCCGGATCCGTCCATCTCCAGGCCATTGCCCGCGCCCCTCCCTGTACCTGTCGCTCTCCCCACCGCATCCCACGGGTGTCTGAAACAGGGATCCCTCCCGAGAGCGCCTCAGTGTCCCGACGCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27593 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4652 TRUE 1763 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57820549:+ chr19:58331089-58357606:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 0 104 24 ENST00000594328.1 ENST00000599802.1 downstream upstream multimappers(1) TCAG___GAGCAACTTGGCGAGGgTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCT...GTAGGGCCGAGACTTCCGGGGTCCTCTTGTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27594 ZNF587B::ZNF586 ENSG00000269343.9::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4652 TRUE 1763 ZNF587B ENSG00000269343.9 protein_coding + + chr19:57819721-57846238:+ chr19:57819945:+ chr19:58331089-58357606:+ chr19:58331313:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 1 0 0 125 24 ENST00000651253.2 ENST00000599802.1 downstream upstream duplicates(1) CGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGG...CCCCAAGTgGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCTGGTCAACTACATT MAAAAPRRPTQ|MHLWVAPSLQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27595 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4653 TRUE 1764 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57814459:+ chr19:58281023-58331307:+ chr19:58325827:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense unknown 5'UTR/splice-site CDS duplication low none none none 1 1 0 104 7 ENST00000596498.2 ENST00000598885.5 downstream upstream duplicates(1) CGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGGTGCACAGAGGCGGCTCTGCAGCCCGGTGAGGGCGCCTGCTG...TTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|GCGCCTGTGGACCCCAGGTTCCATCCTCCCGGATCCGTCCATCTCCAGGCCATTGCCCGCGCCCCTCCCTGTACCTGTCGCTCTCCCCACCGCATCCCACGGGTGTCTGAAACAGGGATCCCTCCCGAGAGCGCCTCAGTGTCCCGACGCCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27596 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4653 TRUE 1764 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57820549:+ chr19:58331087-58370309:+ chr19:58331917:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication low none none none 0 1 0 104 24 ENST00000596498.2 ENST00000599802.1 downstream upstream multimappers(1) TCAG___GAGCAACTTGGCGAGGgTCAGACTCTTGGAGCCAGAAGCTACATGACCCCTAAACG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCT...GTAGGGCCGAGACTTCCGGGGTCCTCTTGTAGCGGCCACGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27597 ENSG00000268750::ZNF586 ENSG00000268750.7::ENSG00000083828.16 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4653 TRUE 1764 ENSG00000268750 ENSG00000268750.7 protein_coding + + chr19:57819719-57858941:+ chr19:57819945:+ chr19:58331087-58370309:+ chr19:58331313:+ ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57819568:+ chr19:58281023-58331307:+ chr19:58330936:+ chr19:57824283,chr19:57824305,chr19:57824306,chr19:57824306,chr19:57824327 chr19:57810952,chr19:57810973,chr19:57810975,chr19:57810980,chr19:57810995 NA NA chr19:58335651,chr19:58335673,chr19:58335674,chr19:58335674,chr19:58335695 chr19:58322320,chr19:58322341,chr19:58322343,chr19:58322348,chr19:58322363 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none none none 1 0 0 125 24 ENST00000593873.6 ENST00000599802.1 downstream upstream duplicates(1) CGTTGATCTGCGATACGCGTGTTTGCCCAGTGAGTGGCCCCGGACTGCTACGTGGGACTGCGGTGAATGAACCCAGAAGGTGGAGAGGAACCGTTCTCGG...CCCCAAGTgGTCCGATGGCTGCGGCTGCGCCGAGGCGCCCTACTCAG|ATGCACCTCTGGGTAGCGCCCTCTTTACAGCCTTGAAACCTGGTCAACTACATT MAAAAPRRPTQ|MHLWVAPSLQP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27598 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2554 TRUE 4654 TRUE 1765 TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59863664:- chr17:57936840-57970306:- chr17:57941025:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(100%)| 52 34 128 262 1969 ENST00000325752.8 ENST00000262291.9 upstream upstream duplicates(17),mismatches(9) CTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAGTGCAGATGTGG___AGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGTGGAAAACCCAGCGGGCCTTTAGCAAATATGAGAAGTCTGCAGTGTTGGTCAGCAACAGCCAGTTCTTAGTAAAACCACTTGATATGATTGTTGGGAAGGCATGGAATATGTTTGCTTCAAA|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTC LNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASk|ektgcpgclkswslswcvtssylsltpwhkvmpnesssg* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Liver hepatocellular carcinoma LUNG,LIVER no_match 57941025|57941025|57941025,57963444|57970058 TRUE|TRUE|TRUE,FALSE|FALSE 57816198|57814814|57842332,57851115|57851115 FALSE|FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27599 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4654 TRUE 1765 TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59866609:- chr17:57936840-57970306:- chr17:57943970:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(89%)| 4 1 38 259 1969 ENST00000325752.8 ENST00000710770.1 upstream upstream duplicates(5),mismatches(2) GAAAGCTCATTTCACTACAGACGAAATCCACTAG___...CAGATGCTCATTTCTAATGCAAAGATGGAAGAAG___GTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCTTAGTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAGTGCAGATGTGG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTC QMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSADV|gRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Liver hepatocellular carcinoma LUNG,LIVER no_match 57941025|57941025|57941025,57963444|57970058 FALSE|FALSE|FALSE,FALSE|FALSE 57816198|57814814|57842332,57851115|57851115 FALSE|FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27600 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4654 TRUE 1765 TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59874539:- chr17:57936840-57970306:- chr17:57951900:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(60%)| 2 0 16 199 1969 ENST00000325752.8 ENST00000710770.1 upstream upstream duplicates(2),mismatches(1) CTTCATGAGAATGATGCCATCCATAAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATCAGCTGGGAAGTGTGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAG___GAGACTTAATGGAGCATTTAGTTCCCCATCCTGAATTCAAGATGCTGAGTGTTCGTAACATTCCTCACATGTCTGAGAATTCATTGGCATACACCACATTTACTTGGGCTGGCCTCCTCAAGCATTTGAGACAGATGCTCATTTCTAATGCAAAGATGGAAGAAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTC LHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEE|gRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Liver hepatocellular carcinoma LUNG,LIVER no_match 57941025|57941025|57941025,57963444|57970058 FALSE|FALSE|FALSE,FALSE|FALSE 57816198|57814814|57842332,57851115|57851115 FALSE|FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27601 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4654 TRUE 1765 TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59878103:- chr17:57936840-57970306:- chr17:57955464:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion medium none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(47%)| 1 0 7 290 1969 ENST00000325752.8 ENST00000710770.1 upstream upstream duplicates(2),mismatches(1) ATTTAGAAGATCAGTACTCAAACTCATTGAAAATGAATCAGATTATTTGGCCTTATGGAACTGGTGAG___GTTATTGTTCAAAACTACAACTCCATTTTGACACTTTCTCACTTGTACCGATCTTCAGACGCCCTCCTTCTTCATGAGAATGATGCCATCCATAAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCA...GGGAAGTGTGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAG|GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAAGTAGAGAAAGTTTTAAACTGCAGAAATTGGAGTGGATGGGTTCTGCCTTAAATTGGGAGGACTCCAAGCCGGGAAGGAAAATTCCCTTTTCCAACCTGTATCAATTTTTACAACTTTTTTC GSVFQPTYSAESSFHYRRNPL|gRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Liver hepatocellular carcinoma LUNG,LIVER no_match 57941025|57941025|57941025,57963444|57970058 FALSE|FALSE|FALSE,FALSE|FALSE 57816198|57814814|57842332,57851115|57851115 FALSE|FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27602 VMP1::TUBD1 ENSG00000062716.13::ENSG00000108423.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838397:+ chr17:57784553-57919616:+ chr17:57915758:+ TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59863847:- chr17:57936840-57970306:- chr17:57941208:- chr17:59842436,chr17:59842439 chr17:59866057,chr17:59866057 NA NA chr17:57919797,chr17:57919800 chr17:57943418,chr17:57943418 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion low Mitelman SNARE_associated_Golgi_protein(100%)| |Tubulin(0%) 1 0 0 1559 235 ENST00000588617.1 ENST00000325752.8 downstream downstream none CAGAATTTCAGCAGTTCTCTGATTTTTATATTTTATTCCTCTTCCTATCCAATCCCTGCCTTTTGAGTCCAGGTGGTAAGTACATTTTCTTTAACGTTTTT...CACAAAAGCGAAATGGGCACACCACAG|AGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGTGGAAAACCCAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Nasopharynx,Gallbladder/Biliary_system inexact TRUE Head and Neck squamous cell carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma HEAD_AND_NECK,CERVIX inexact 57895134,57895134|57895134 FALSE,FALSE|FALSE 57955695,57944110|57941208 FALSE,FALSE|TRUE YES,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27603 LGALS3BP::CYTH1 ENSG00000108679.13::ENSG00000108669.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4655 TRUE 1766 LGALS3BP ENSG00000108679.13 protein_coding - - chr17:78971238-78979947:- chr17:78972970:- chr17:76967320-76976029:- chr17:76969052:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78741918:- chr17:76670130-76778379:- chr17:76738000:- chr17:78972958 chr17:78747401 NA NA chr17:76969040 chr17:76743483 NA NA sense sense out-of-frame CDS/splice-site intron deletion/read-through high none Scavenger_receptor_cysteine-rich_domain(100%)|PH_domain(100%),Sec7_domain(100%) SRCR(100%)|PH(100%),Sec7(100%) 38 38 98 1910 195 ENST00000262776.8 unknown upstream downstream duplicates(8),mismappers(9),mismatches(17),multimappers(4) CGCTGGTGTGGTCTGCACCAATG___AAACCAGGAGCACCCACACCCTGGACCTCTCCAGGGAGCTCTCGGAGGCCCTTGGCCAGATCTTTGACAGCCAGCGGGGCTGCGACCTGTCCATCAGCGTGAATGTGCAGGGCGAGGACGCCCTGGGCTTCTGTGGCCACACGGTCATCCTGACTGCCAACCTGGAGGCCCAGGCCCTGTGGAAGGAGCCGGGCAGCAATGTCACCATGAGTGTGGATGCTGAGTGTGTGCCCATGGTCAGGGACCTTCTCAG|TGGGAAACCTGGCCCCCAGGATCTGGCTTGAGGGTTGCACCCGACACCTTCCTTTTGCCTCCAGCTCTACTTCCTGTCCGGCTCCATCCTGCTGTCTGCCGGAGGCTGTCCTGGAGGGAGTGTGGTTCCTGGTTGGGTTTGACCAGGAGACGCgAGGGTGAGAGAAGAGTGAAGTCAAGGTGATTCTCTCCTGCTGGTAACTGAGGCTTGCTGAATCCTCTACTGACACTCTTGCCAGAGAGCTCCCATTTGCCACTTTTAGCAGCAGTATGATGCCCTCGCACCCCGT AGVVCTNETRSTHTLDLSRELSEALGQIFDSQRGCDLSISVNVQGEDALGFCGHTVILTANLEAQALWKEPGSNVTMSVDAECVPMVRDLLs|gkpgpqdla* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27604 LGALS3BP::CYTH1 ENSG00000108679.13::ENSG00000108669.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2555 TRUE 4655 TRUE 1766 LGALS3BP ENSG00000108679.13 protein_coding - - chr17:78971238-78979947:- chr17:78972970:- chr17:76967320-76976029:- chr17:76969052:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78709732:- chr17:76670130-76778379:- chr17:76705814:- chr17:78972958 chr17:78747401 NA NA chr17:76969040 chr17:76743483 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Scavenger_receptor_cysteine-rich_domain(100%)|PH_domain(100%),Sec7_domain(100%) SRCR(100%)|PH(100%),Sec7(100%) 3 3 9 1910 277 ENST00000262776.8 ENST00000446868.8 upstream downstream duplicates(1) GCCAGATCTTCTCTCCTGCTTGAAGCACCAG___GCGTGAACGATGGTGACATGCGGCTGGCCGATGGGGGCGCCACCAACCAGGGCCGCGTGGAGATCTTCT...GGCTGAAGAGCAACTGCAGGCACGAGAGAGACGCTGGTGTGGTCTGCACCAATG___AAACCAGGAGCACCCACACCCTGGACCTCTCCAGGGAGCTCTCGGAGGCCCTTGGCCAGATCTTTGACAGCCAGCGGGGCTGCGACCTGTCCATCAGCGTGAATGTGCAGGGCGAGGACGCCCTGGGCTTCTGTGGCCACACGGTCATCCTGAaTGCCAACCTGGAGGCCCAGGCCCTGTGGAAGGAGCCGGGCAGCAATGTCACCATGAGTGTGGATGCTGAGTGTGTGCCCATGGTCAGGGACCTTCTCAG|TTCCCAGTGACCTGACAGCAGAGGAGCGTCAAGAACTGGAGAACATCCGACGGAGAAAACAGGAGCTGCTGGCTGACATTCAG___AGGCTGAAGGATGAGATAGCAGAAGTAGCTAATGAAATTGAAAACCTGGGATCCACAGAGGAAAG___GAAAAACATGCAGAGGAACAAAC...___GAG LKSNCRHERDAGVVCTNETRSTHTLDLSRELSEALGQIFDSQRGCDLSISVNVQGEDALGFCGHTVILnANLEAQALWKEPGSNVTMSVDAECVPMVRDLLs|sq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27605 LGALS3BP::CYTH1 ENSG00000108679.13::ENSG00000108669.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4655 TRUE 1766 LGALS3BP ENSG00000108679.13 protein_coding - - chr17:78971238-78979947:- chr17:78974688:- chr17:76967320-76976029:- chr17:76970770:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78709732:- chr17:76670130-76778379:- chr17:76705814:- chr17:78972958 chr17:78747401 NA NA chr17:76969040 chr17:76743483 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Scavenger_receptor_cysteine-rich_domain(100%)|PH_domain(100%),Sec7_domain(100%) SRCR(100%)|PH(100%),Sec7(100%) 1 1 5 2353 277 ENST00000591778.5 ENST00000446868.8 upstream downstream duplicates(1) CCCCATCATGCTGGAcGAGGTCCAGTGCACGGGAACCGAGGCCTCACTGGCCGACTGCAAGTCCCTGGGCTGGCTGAAGAGCAACTGCAGGCACGAGAGAGACGCTGGTGTGGTCTGCACCAATG|TTCCCAGTGACCTGACAGCAGAGGAGCGTCAAGAACTGGAGAACATCCGACGGAGAAAACAGGAGCTGCTGGCTGACATTCAG___AGGCTGAAGGATGAGATAGCAGAAGTAGCTAATGAAATTGAAAACCTGGGATCCACAGAGGAAAG___GAAAA PIMLDEVQCTGTEASLADCKSLGWLKSNCRHERDAGVVCTN|vPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27606 RFWD3::MLKL ENSG00000168411.14::ENSG00000168404.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2556 FALSE NA FALSE NA RFWD3 ENSG00000168411.14 protein_coding - - chr16:74621399-74666877:- chr16:74666786:- chr16:74655297-74700775:- chr16:74700684:- MLKL ENSG00000168404.13 protein_coding - - chr16:74671855-74700960:- chr16:74685583:- chr16:74705753-74734858:- chr16:74719481:- chr16:74665966 chr16:74686832 NA NA chr16:74699864 chr16:74720730 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none |Protein_kinase_domain(90%) |PK_Tyr_Ser-Thr(69%),Pkinase(69%) 5 109 0 518 318 ENST00000361070.9 ENST00000308807.12 upstream downstream duplicates(3),mismatches(7) CGGCgGAGGTAACTACCGAGTCTTCGGCGGGCTCGCGAGCCCGGCCGCGGCCTGCTGGTTTCAG|AATAGTGAGGCAGACTTTCAATAAGGAGATCAAAACCATGAAGAAATTCGAATCTCCCAACATCCTGCGTATATTTGGGATTTGCATTGATGAAACAG___TGACTCCGCCTCAATTCTCCATTGTCATGGAGTACTGTGAACTCGGGACCCTGAGGGAGCTGTTGGATAGGGAAAAAGACCTCACACTTGGCAAGCGCATGGTCCTAGTCCTGGGGGCAGCCCGAGGCCTATACCG___GCTACACCATTCAGAAGCACCTGAACTCCACGGAAAAATCAGAAGCTCAAACTTCCTGGTAACTCAAGGCTACCAAGTGAAG___CTTGCAGGATTTGAGTTGAGGAAAACA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mixed lineage kinase domain-like protein TKL TKL-Unique Q8NB16 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ring finger and WD repeat domain 3 2 lung cancer Fanconi anemia W epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 27607 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2557 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53683874:- chrX:53559057-53713697:- chrX:53710819:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 17 10 70 207 136 ENST00000342160.7 ENST00000337414.9 upstream downstream duplicates(13),mismatches(15) CTGGAAAGGGCTGGGCTCAGGCTTTTCCCGTCCGGTAGAGGTTCTCGCGGGATCGCGCGGAGGCGGCGGTGGCTCGGTTACTGACTGCAGTAGCCGCGGAGGCGGCGGCAAGGTCTTCGGCTCGTGCCGTTCTAAGCCGGAGAATTCTCGCGGGAGCAGGGTTACGTCCTCGTGGGATTCGTTGGCGGTGGCTGAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27608 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2558 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53686270:- chrX:53559057-53713697:- chrX:53713215:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 5 16 15 106 136 ENST00000262854.11 ENST00000337414.9 upstream downstream duplicates(5),mismatches(4) CAGGGCTGGAGCAGGGCTGgAGCAGGGCTGAAGCAGGGCCGCGGACCCCGCACGCTCCTGCGGGCCCCGCGGAGCCATTGCGGCCGAG___GCCTCGGCAGGCGCCAGCGGAGAGCTAGCCGCATCTTCGGGGGCAGCCCGGCAGCTGCCGGCGGCGCGGCGAGAGAGCGGCTGACAGAGGGGATGCGAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTCATCCCACAGGCATTTGGAATGCCCTTATCCCAAGTCATTGCGAATGACAGGGCCTATAAACTCAAGCAGGACTTGCAGAGGGACGAGCAGAAAGATGCATCTGACTTTGTGGCTTCCCTCCTCCCATTTGGAAATAAAAGACAAAACAAAGAACTCTCAAGCAGTAACTCATCTCTCAGCTCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27609 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2559 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53684180:- chrX:53559057-53713697:- chrX:53711125:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 1 8 23 10 136 ENST00000704102.1 ENST00000337414.9 upstream downstream duplicates(2),mismatches(3) CAGCGGAGAGCTAGCCGCATCTTCGGGGGCAGCCCGGCAGCTGCCGGCGGCGCGGCGAGAGAGCGGCTGACAGAGGGGATGCGAG___GAGTGTGCACCAGGTCTCGCGATATCTCATGTTTCCTAAAGGCGAGGCGCGGGCGGCATCCTGCGGTGAATTAAGAAGGTCTCGCCGAGGCTAAAGCGTAATATCGCGATAGTTCTCAACGCATGCGGGAGCCGGCCGTG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTCATCCCACAGGCATTTGGAATGCCCTTATCCCAAGTCATTGCGAATGACAGGGCCTATAAACTCAAGCAGGACTTGCAGAGGGACGAGCAGAAAGATGCATCTGACTTTGTGGCTTCCCTCCTCCCATTTGGAAATAAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27610 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53686166:- chrX:53559057-53713697:- chrX:53713111:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 2 3 21 62 136 ENST00000262854.11 ENST00000337414.9 upstream downstream duplicates(3),mismatches(4) CAGGGCTGGAGCAGGGCTGgAGCAGGGCTGAAGCAGGGCCGCGGACCCCGCACGCTCCTGCGGGCCCCGCGGAGCCATTGCGGCCGAG___GCCTCGGCAGGCGCCAGCGGAGAGCTAGCCGCATCTTCGGGGGCAGCCCGGCAGCTGCCGGCGGCGCGGCGAGAGAGCGGCTGACAGAGGGGATGCGAGGTACCGGCATTAGCCATGGCCAAGTGGCCCTAAAGAGAGAGTAGAGGCCGGGCCTTCAGCGTTTCTCACTGGTTCGAGGAAGGCGGCCTCAGAGGAGAGGGAAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTCAT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27611 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53686588:- chrX:53559057-53713697:- chrX:53713533:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site deletion high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 0 1 7 124 136 ENST00000218328.12 ENST00000337414.9 upstream downstream duplicates(2),mismatches(1) CTTTCGACTGA?GGCTAGCGAGGGGAGCAGGGCTGGAGCAGGGCTGGAGCAGGGCTGGAGCAGGGCTGgAGCAGGGCTGAAGCAGGGCCGCGGACCCCGCACGCTCCTGCGGGCCCCGCGGAGCCATTGCGGCCGAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTCATCCCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27612 MECP2::PDK3 ENSG00000169057.25::ENSG00000067992.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4657 TRUE 1768 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154092184:- chrX:153287024-153402578:- chrX:153357642:- PDK3 ENSG00000067992.17 protein_coding + + chrX:24465244-24550466:+ chrX:24494742:+ chrX:24483361-24568583:+ chrX:24512859:+ chrX:154068588,chrX:154068591 chrX:24465521,chrX:24465518 NA NA chrX:153334039,chrX:153334042 chrX:24483638,chrX:24483635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Mitochondrial_branched-chain_alpha-ketoacid_dehydrogenase_kinase(93%) |BCDHK_Adom3(26%),HATPase_c(100%) 8 19 62 157 134 ENST00000303391.11 ENST00000568479.2 upstream upstream duplicates(7),mismatches(1) GTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT___GCTCCATAAAAATACAGACTCACCAGTTCCTGCTTTGATGTGACATGTGACTCCCCAGAATACACCTTGCTTCTGTAGACCAGCTCCAACAGGATTCCATGGTAGCTGGGATGTTAGGGCTCAG|GGAGAGATAATGCATGTGAGAAAACTTCATATATGTTTCTACGAAAGGAACTTCCTGTGCGGCTGGCTAACACAATGAGAGAAGTTAATCTTCTGCCGGATAATTTACTTAACCGCCCTTCAGTGGGATTGGTTCAGAGTTG___GTATATGCAGAGTTTTCTTGAACTTTTAGAATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGATAA___CTTTCTACAAGTTCTGATTAAAGTCAGAAATAGACACAATGATGTGGTTCCTACAATGGCACAAGGAGTGATTGAATACAAGGAGAA MVAGMLGLr|er* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 Atypical PDHK Q15120 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27613 MECP2::PDK3 ENSG00000169057.25::ENSG00000067992.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4657 TRUE 1768 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154097604:- chrX:153287024-153402578:- chrX:153363061:- PDK3 ENSG00000067992.17 protein_coding + + chrX:24465244-24550466:+ chrX:24494742:+ chrX:24483361-24568583:+ chrX:24512859:+ chrX:154068588,chrX:154068591 chrX:24465521,chrX:24465518 NA NA chrX:153334039,chrX:153334042 chrX:24483638,chrX:24483635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Mitochondrial_branched-chain_alpha-ketoacid_dehydrogenase_kinase(93%) |BCDHK_Adom3(26%),HATPase_c(100%) 0 24 8 259 134 ENST00000453960.7 ENST00000568479.2 upstream upstream duplicates(2),low_entropy(4),mismatches(2) GTCGGCGGCGCGCGCGCTCCCTCCTCTCGGAGAGAGGGCTGTGGTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT|GGAGAGATAATGCATGTGAGAAAACTTCATATATGTTTCTACGAAAGGAACTTCCTGTGCGGCTGGCTAACACAATGAGAGAAGTTAATCTTCTGCCGGATAATTTACTTAACCGCCCTTCAGTGGGATTGGTTCAGAGTTG___GTATATGCAGAGTTTTCTTGAACTTTTAGAATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGATAA___CTTTCTACAAGTTCTGATTAAAGTCAGAAATAGACACAATGATGTGGTTCCTACAATGGCACAAGGAGTGATTGA MAAAAAAAPSGGGGGGEEERl|er* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 Atypical PDHK Q15120 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27614 MECP2::PDK3 ENSG00000169057.25::ENSG00000067992.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4657 TRUE 1768 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154097604:- chrX:153287024-153402578:- chrX:153363061:- PDK3 ENSG00000067992.17 protein_coding + + chrX:24465244-24550466:+ chrX:24498829:+ chrX:24483361-24568583:+ chrX:24516946:+ chrX:154068588,chrX:154068591 chrX:24465521,chrX:24465518 NA NA chrX:153334039,chrX:153334042 chrX:24483638,chrX:24483635 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion low none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Mitochondrial_branched-chain_alpha-ketoacid_dehydrogenase_kinase(64%) |BCDHK_Adom3(16%),HATPase_c(100%) 0 0 0 259 127 ENST00000453960.7 ENST00000568479.2 upstream upstream low_entropy(1) CCGGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT|GTATATGCAGAGTTTTCTTGAACTTTTAGAATATGAAAATAAGAGCCCTGAGGATCCACAGGTCTTGGA MAAAAAAAPSGGGGGGEEERl|YMQSFLELLEYENKSPEDPQVL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 Atypical PDHK Q15120 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27615 MECP2::PDK3 ENSG00000169057.25::ENSG00000067992.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4657 TRUE 1768 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154097604:- chrX:153287024-153402578:- chrX:153363061:- PDK3 ENSG00000067992.17 protein_coding + + chrX:24465244-24550466:+ chrX:24518933:+ chrX:24483361-24568583:+ chrX:24537050:+ chrX:154068588,chrX:154068591 chrX:24465521,chrX:24465518 NA NA chrX:153334039,chrX:153334042 chrX:24483638,chrX:24483635 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion low none |Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%) |HATPase_c(100%) 0 0 0 259 130 ENST00000453960.7 ENST00000568479.2 upstream upstream low_entropy(1) GGAAAATGGCCGCCGCCGCCGCCGCCGCGCCGAGCGGAGGAGGAGGAGGAGGCGAGGAGGAGAGACT|ATGCATATGAAACAGCCAAGATGCTGTGTGAACAGTATTACCTGGTAGCTCCAGAGCTG MAAAAAAAPSGGGGGGEEERl|ci* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3 Atypical PDHK Q15120 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27620 DIAPH3::ELAPOR2 ENSG00000139734.19::ENSG00000164659.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE TRUE 2561 TRUE 4659 TRUE 1769 DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:60093628:- chr13:60239717-60738062:- chr13:60667762:- ELAPOR2 ENSG00000164659.15 protein_coding - - chr7:86876906-87059654:- chr7:86965024:- chr7:86506222-86688970:- chr7:86594340:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Diaphanous_GTPase-binding_Domain(27%)| Drf_GBD(18%)| 4 12 24 102 68 ENST00000400324.9 ENST00000450689.7 upstream downstream duplicates(2),mismappers(1),mismatches(3) ATGATGGAGAACTTTCCAAAGCCACTGTCAGAGAATGAACTCTTAGAACTTTTTGAAAAAATGATG___GAAGATATGAATTTAAATGAAGATAAAAAGGCACCATTGCGGGAAAAGGACTTCAGTATCAAAAAAGAAATGGTGATGCAGTACATTAATACTGCTTCTAAGACA|AAAGATTATCACTTTGAATATACGGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCAAATTCTGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA___CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTATTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGG MMENFPKPLSENELLELFEKMMEDMNLNEDKKAPLREKDFSIKKEMVMQYINTASKT|KDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27621 DIAPH3::ELAPOR2 ENSG00000139734.19::ENSG00000164659.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4659 TRUE 1769 DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:60093628:- chr13:60239717-60738062:- chr13:60667762:- ELAPOR2 ENSG00000164659.15 protein_coding - - chr7:86876906-87059654:- chr7:86947922:- chr7:86506222-86688970:- chr7:86577238:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none Diaphanous_GTPase-binding_Domain(27%)| Drf_GBD(18%)| 0 1 8 102 65 ENST00000400324.9 ENST00000450689.7 upstream downstream duplicates(1),mismatches(1) CAGAGAATGAACTCTTAGAACTTTTTGAAAAAATGATG___GAAGATATGAATTTAAATGAAGATAAAAAGGCACCATTGCGGGAAAAGGACTTCAGTATCAAAAAAGAAATGGTGATGCAGTACATTAATACTGCTTCTAAGACA|CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTATTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCTAACATCGCAACATTCATGGACACTGTGGTGGGCCCTTCT ENELLELFEKMMEDMNLNEDKKAPLREKDFSIKKEMVMQYINTASKT|lspvllesi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27622 SLX9::MIR924HG ENSG00000160256.14::ENSG00000267374.3 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4660 TRUE 1770 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44973265:+ chr21:46359940-46396888:+ chr21:46393180:+ MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39388527:- chr18:36786881-37380286:- chr18:36968491:- chr21:44974446,chr21:44974444 chr18:39455921,chr18:39455923 NA NA chr21:46394361,chr21:46394359 chr18:37035885,chr18:37035887 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Ribosome_biogenesis_protein_SLX9(75%)| SLX9(78%)| 3 12 24 331 57 ENST00000291634.11 ENST00000653742.1 downstream downstream duplicates(6),mismatches(1) TCTCAGGGATGCCCTGCCCGAGCTGCTGGGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAG___CAGGGAGAGCAACAAGCCCCGGCCCTCAGAGCTCAGCCGGATGAGCGCAGCCCAGAGACAGCAGCTTCT|GTGGAAATGTAAATCAGTCCATGTTACTCACCTCGGAGAAGCAGAAGTACGATTTACTATTGTTGCTTGCTTACTTACTCTTATCAATTTCTATGAGAG___CAGCATATGATCCCCTGTTGAAGACAGACAAGTACATCTTTCTGGTGGCTCCTAGACCTGGCATTGG LRDALPELLGLEAGSRRQARSRESNKPRPSELSRMSAAQRQQLl|wkcksvhvthlgeaevrftivaclltlinfyessi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27623 SLX9::MIR924HG ENSG00000160256.14::ENSG00000267374.3 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4660 TRUE 1770 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44967181:+ chr21:46359940-46396888:+ chr21:46387096:+ MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39388527:- chr18:36786881-37380286:- chr18:36968491:- chr21:44974446,chr21:44974444 chr18:39455921,chr18:39455923 NA NA chr21:46394361,chr21:46394359 chr18:37035885,chr18:37035887 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Ribosome_biogenesis_protein_SLX9(55%)| SLX9(42%)| 0 3 16 427 57 ENST00000397826.8 ENST00000653742.1 downstream downstream duplicates(3) GTGAGGAGTGTCACTTCCGTCAGGAGAG___GTGCAGAGGCCAAGACCGTTTTGCCCAAGAAGGAGAAAATGAAGCTGAGGCGTGAGCAATGGTTGCAGA___AAATCGAAGCCATAAAACTGGCTGAGCAGAAGCACAGGGAGGAGCGGAGGCGGAGGGCCACGGTGGTGGTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCTGCTGGGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAG|GTGGAAATGTAAATCAGTCCATGTTACTCACCTCGGAGAAGCAGAAGTACGATTTACTATTGTTGCTTGCTTACTTACTCTTATCAATTTCTATGAGAG___CAGCATATGATCCCCTGTTGAAGACAGACAAGTACATCTTTCTGGTGGCTCCTAG VRSVTSVRRGAEAKTVLPKKEKMKLRREQWLQKIEAIKLAEQKHREERRRRATVVVGDLHPLRDALPELLGLEAGSRRQARr|wkcksvhvthlgeaevrftivaclltlinfyessi* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27624 SLX9::MIR924HG ENSG00000160256.14::ENSG00000267374.3 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4660 TRUE 1770 SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44973265:+ chr21:46359940-46396888:+ chr21:46393180:+ MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39348757:- chr18:36786881-37380286:- chr18:36928721:- chr21:44974446,chr21:44974444 chr18:39455921,chr18:39455923 NA NA chr21:46394361,chr21:46394359 chr18:37035885,chr18:37035887 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Ribosome_biogenesis_protein_SLX9(75%)| SLX9(78%)| 1 1 8 331 39 ENST00000291634.11 ENST00000667722.1 downstream downstream none ATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGACGTGAGGAGTGTCACTTCCGTCAGGAGAGGTGAGGCAGGCTCGAGTGCACGGAGCGTCCCTTC...CTCAGGGATGCCCTGCCCGAGCTGCTGGGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAG___CAGGGAGAGCAACAAGCCCCGGCCCTCAGAGCTCAGCCGGATGAGCGCAGCCCAGAGACAGCAGCTTCT|CAGCATATGATCCCCTGTTGAAGACAGACAAGTACATCTTTCTGGTGGCTCCTAGACCTGGCATTGGGAACAGAAGATTATCAGTATGATCCGTACGCTTAAGGAAAGATCTCATATTATTGAAATGAATATTTTATTTGATAAATTGAAC LRDALPELLGLEAGSRRQARSRESNKPRPSELSRMSAAQRQQLl|si* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27630 ATP5F1A::RNF165 ENSG00000152234.16::ENSG00000141622.14 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ATP5F1A ENSG00000152234.16 protein_coding - - chr18:46080248-46104334:- chr18:46095053:- chr18:43660214-43684300:- chr18:43675019:- RNF165 ENSG00000141622.14 protein_coding + - chr18:46326809-46463140:+ chr18:46349465:- chr18:43906772-44043103:+ chr18:43929428:- chr18:46092952,chr18:46092959 chr18:46357476,chr18:46357480 NA NA chr18:43672918,chr18:43672925 chr18:43937439,chr18:43937443 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 8 2 23 3163 9 ENST00000282050.6 unknown upstream downstream duplicates(4) GCGGCTGCAGAAGTACCGCCTGCGGAGTAACTGCAAAGATGCTGTCCGTGCGCGTTGCTGCGGCCGTGGTCCGCGCCCTTCCTCGGCGGGCCGGACTG___GTCTCCAGAAATGCTTTGGGTTCATCTTTCATTGCTGCAAGGAACTTCCATGCCTCTAACACTCATCTTCAAAAGACTG|ATGATGGTGTTAAAAGATGGGGTCTTCGAGAAGTGATTCGATTCCAAGAGTGAAGCGCTCATGAATGGAATTAGTGCCGTTATAAAAGAGGCCCCAGAGGAGTCCCTCTCACCATCTGCCATGCAAGGTTACAGCAAAAAAACAGCCATCTAGGAAGTGGACCCTCACCCGCAACAAACCTGCTGGCACCTTGAGCTTGGATTCCCAGCCTCCAGTACACCGG...A MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKT|ddgvkrwglrevirfqe* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27631 HINT3::NCOA7 ENSG00000111911.7::ENSG00000111912.20 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2562 FALSE NA FALSE NA HINT3 ENSG00000111911.7 protein_coding + + chr6:125956770-125980244:+ chr6:125967004:+ chr6:126277916-126301390:+ chr6:126288150:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125928174:+ chr6:126102307-126253180:+ chr6:126249320:+ chr6:125968973,chr6:125968970 chr6:125927686,chr6:125927680 NA NA chr6:126290119,chr6:126290116 chr6:126248832,chr6:126248826 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none Scavenger_mRNA_decapping_enzyme_C-term_binding(54%)|TLD(50%) DcpS_C(55%),HIT(55%)|TLD(9%) 9 7 9 181 162 ENST00000229633.7 ENST00000368357.7 downstream upstream duplicates(2),mismatches(2) GTTTTGAGGCCGGCCTCCGGCTTTGAAGTTCCTCACCGCGTCTCCTTCCCTCTCCCCAAAGCCTGGATCACCGCCCAGCGTCAGGCGAGGGGCGACGTCTCGAGGTAAAACGGAGGAGGTGCGGGACGCGGAGACTGCGCGGGCCCG...GAGAGGCCGAGGCTCTAGGCCGCGAGGGGCGGGTGCAATGGCGGAGGAACAGGTGAACCGCAGCGCCGGCCTGGCCCCCGACTGTGAGGCCTCGGCGACTGCAGAAACTACGGTTTCCTCAGTGGGGACCTGTGAAGCCGCTGcCAAGTCACCAGAGCCCAAGGACTACGACAGCACCTGCGTGTTCTGCCGGATCGCGGGGCGGCAGGACCCGGGCACCGAACTCCTGCACTGCGAG___AATGAGGACCTAATTTGCTTCAAAGATATCAAACCAGCAGCAACTCATCATTATCTTGTGGTGCCAAAGAAGCATATTGGAAACTGCAGAACTCTAAGGAAAGATCAAGTAGAACTGG|GTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATCAATGGAGACATAAGTTCTTTAGAACTTGGTGGTGGAGG___GGGACGATTTGGTTTATGGCTAGATGCTGATTTATACCACGGACGAAGCAACTCTTGCAGCACTTTCA MAEEQVNRSAGLAPDCEASATAETTVSSVGTCEAAaKSPEPKDYDSTCVFCRIAGRQDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVEL|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27632 MICALL1::EIF3L ENSG00000100139.14::ENSG00000100129.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2563 TRUE 4663 TRUE 1771 MICALL1 ENSG00000100139.14 protein_coding + + chr22:37905657-37942822:+ chr22:37927826:+ chr22:38301664-38338829:+ chr22:38323833:+ EIF3L ENSG00000100129.18 protein_coding + + chr22:37848868-37889407:+ chr22:37877674:+ chr22:38244875-38285414:+ chr22:38273681:+ chr22:37929218 chr22:37876042 NA NA chr22:38325225 chr22:38272049 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|RNA_polymerase_I-associated_factor_PAF67(47%) CAMSAP_CH(100%),CH(100%),LIM(100%)|Paf67(38%) 6 7 12 274 1902 ENST00000215957.10 ENST00000412331.6 downstream upstream mismatches(1) AGCTCCTCAGAGCCTGCTGTCCATGCCCCTGGTACCCCTGGAAACCCTGTCAGCCTCTCTACCAACTCCTCCCTGGCCTCCTCTGGGGAACTAGTGGAGCCTAGAGTGGAACAAATGCCTCAAGCCAGCCCTGGCCTTGCCCCCAGGACCAGGGGCAGCTCAGGTCCCCAGCCAGCCAAGCCCTGCAGTGGCGCCACCCCAACGCCTCTCTTGTTGGTTGGAGACAGGAGCCCGGTGCCTTCCCCTGGAAGCTCGTCCCCACAGCTGCAGGTAAAG|ATTAACAAGCAGAATGAGCAGATGCATGCGCTGCTGGCCATTGCCCTCACGATGTACCCCATGCGTATcGATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGACAAGATGTTGCGCATGCAGAAAGGTGACCCACAAGTCTATGAAGAACTTTTCAGTTACTCCTGCCCCAAGTTCCTGTCGCCTGTAGTGCCCAACTATGATAATGTGCACCCCAACTACCACAAAGAGCCCTTCC SSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVK|INKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus,Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27633 MICALL1::EIF3L ENSG00000100139.14::ENSG00000100129.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4663 TRUE 1771 MICALL1 ENSG00000100139.14 protein_coding + + chr22:37905657-37942822:+ chr22:37927820:+ chr22:38301664-38338829:+ chr22:38323827:+ EIF3L ENSG00000100129.18 protein_coding + + chr22:37848868-37889407:+ chr22:37877674:+ chr22:38244875-38285414:+ chr22:38273681:+ chr22:37929218 chr22:37876042 NA NA chr22:38325225 chr22:38272049 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Calponin_homology_(CH)_domain(100%),LIM_domain(100%)|RNA_polymerase_I-associated_factor_PAF67(47%) CAMSAP_CH(100%),CH(100%),LIM(100%)|Paf67(38%) 1 0 10 309 1902 ENST00000445494.6 ENST00000412331.6 downstream upstream mismatches(1) CGtCAGCTGTGCCCAAGAGCTCCTCAGAGCCTGCTGTCCATGCCCCTGGTACCCCTGGAAACCCTGTCAGCCTCTCTACCAACTCCTCCCTGGCCTCCTCTGGGGAACTAGTGGAGCCTAGAGTGGAACAAATGCCTCAAGCCAGCCCTGGCCTTGCCCCCAGGACCAGGGGCAGCTCAGGTCCCCAGCCAGCCAAGCCCTGCAGTGGCGCCACCCCAACGCCTCTCTTGTTGGTTGGAGACAGGAGCCCGGTGCCTTCCCCTGGAAGCTCGTCCCCACAGCTGCAG|ATTAACAAGCAGAATGAGCAGATGCATGCGCTGCTGGCCATTGCCCTCACGATGTACCCCATGCGTATcGATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGACAAGATGTTGCGCATGCAGAAAGGTGACCCACAAGTCTATGAAGAACTTTTCAGTTACTCCTGCCCCAAGTTCCTGTCGCCTGTAGTGCCCAACTATGATAATGTGCACCCCAACTACCACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGATGAAGTACAG sAVPKSSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQ|INKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEV NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus,Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27638 APEX2::PHF8 ENSG00000169188.5::ENSG00000172943.21 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA APEX2 ENSG00000169188.5 protein_coding + + chrX:55000363-55009057:+ chrX:55003868:+ chrX:55026796-55035490:+ chrX:55030301:+ PHF8 ENSG00000172943.21 protein_coding - + chrX:53936676-54048958:- chrX:54031221:+ chrX:53963109-54075391:- chrX:54057654:+ chrX:55004123,chrX:55004123 chrX:54023635,chrX:54023632 NA NA chrX:55030556,chrX:55030556 chrX:54050068,chrX:54050065 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Endonuclease/Exonuclease/phosphatase_family(69%)| Exo_endo_phos(54%)| 3 4 11 149 18 ENST00000374987.4 unknown downstream upstream mismatches(2) GCGGGCCTGGCCAACTTCTGAACAGGAAGCAGTTCGCTCGCGCCcAGGTTGGCGCGGGCTGGGAGGTGTTCCAGCCCTTTAAGATGTTGCGCGTGGTGAGC...CAGGAACCCAGCAACTGTGCCGCCGTGGCCGTGGGGCGCATTTTGGACGAGCTGGATGCGGATATCGTCTGTCTCCAGGAAACCAAAGTGACCA___GGGATGC...CTATTTCAGCTTCAGCCGCAACCGTAGCGGCTATTCTG___GgGTAGCCACCgTCTGTgAGGACAATGCTACCCCAGTGGCTGCTGAAGAAGGCCTGAGTGGCCTGTTTGCCACCCAGAATGGGGATGTTGGTTGCTATGGAAACATGGATGAGTTTACCC...CTCCTCACACAGCATAAGATCCG___CACATGGGAAGGTAAGGAGAAGACCTTGACCCTAATCAACGTGTACTGCCCCCATGCGGACCCTGGGAGGCCTGAGCGGCTAGTCaTTAAGATGCGCTTCTATCGTTTGCTGCAAATCCGAGCAGAAGCCCTCCTGGCGGCAGGCAG___CCATGTGATCATTCTGGGTGACCTGAATACAGCCCACCGCCCCATTGACCACTGGGATGCAGTCAACCTG|GGATGTGGAACTGAGTGGGAGCTGAGACTTGGAGATGCCTGAGAGATGATGATTTTGCTCAAGATCCTGTCTGGCTTCTTATCTCCTCAACCTCTGCCTTCTGAGGGTACCCAAGGATCCAGGTCCAGACAGAGCACCATCTATAAAACCAGAAGCTGAAGCATCCACCATTCCCACCGCCCCACCCCTCCAACTCCAGGCACACAGGACTTAAAGGAATGCAAAGGACACAGCAAGTTCCAGCGTACCTAGGAAGTGTC LLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLViKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNL|gcgtewelrlgda* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27639 GSK3A::NUCB1 ENSG00000105723.13::ENSG00000104805.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2566 FALSE NA FALSE NA GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42239955:- chr19:42730377-42746777:- chr19:42744107:- NUCB1 ENSG00000104805.17 protein_coding + + chr19:48900050-48923473:+ chr19:48911149:+ chr19:49403307-49426730:+ chr19:49414406:+ chr19:42239254,chr19:42239256 chr19:48910620,chr19:48910618 NA NA chr19:42743406,chr19:42743408 chr19:49413877,chr19:49413875 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Protein_kinase_domain(13%)|EF-hand_domain_pair(100%) PK_Tyr_Ser-Thr(1%),Pkinase(1%)|EF-hand_7(100%) 2 6 10 329 787 ENST00000222330.8 ENST00000411700.6 upstream upstream duplicates(4) GCGGCAGCGGCGGAGGAGGCAGCGGAGGCCCCGGCGCAGGCACTAGCTTCCCGCCGCCCGGGGTGAAGCTGGGCC___GTGACAGCGGGAAGGTGACCACAGTCGTAGCCACTCTAGGCCAAGGCCCAGAGCGCTCCCAAGAAGTGGCTTACACGGACATCAAAGTGATTGGCAATGGCTCATTTGGGGTCGTGTACCAGGCACGGCTGGCAGAGACCAGGGAACTAGTCGCCATCAAGAAGGTTCTCCAGGACAAGAGGTTCAAG|ATGTACAGGTGGATCATCTGAATCTCCTGAAACAGTTTGAACACCTGGACCCTCAGAACCAGCATACATTCGAGGCCCGCGACCTGGAGCTGCTGATCCAGACG___GCCACCCGGGACCTTGCCC...TAAGcAACACGAGAGACGGCGTTATCTGGAGTCACTGGGAGAGGAGCAGAGAAAGGAGGCGGAGAGGAAGCTGGAAGAGCAACAGCGCCGGCACCGCGAGC...CCTAGATTCTGACCCTTCTAGGACCTGAATGCTAAGAGGGGTGTGTCTGTCCCAGGAGGGCTTAGTCAGGCCCAAGAGCCAAGCCTATGTCCCCTGGT GSGGGGSGGPGAGTSFPPPGVKLGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFK|myrwii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27640 ENSG00000279539::GSK3A ENSG00000279539.1::ENSG00000105723.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2567 FALSE NA FALSE NA ENSG00000279539 ENSG00000279539.1 TEC + + chr19:42242775-42244973:+ chr19:42243395:+ chr19:42746927-42749125:+ chr19:42747547:+ GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42236941:- chr19:42730377-42746777:- chr19:42741093:- chr19:42244086,chr19:42244084 chr19:42239557,chr19:42239559 NA NA chr19:42748238,chr19:42748236 chr19:42743709,chr19:42743711 NA NA sense sense unknown exon CDS/splice-site inversion high none |Protein_kinase_domain(86%) |Kdo(100%),PK_Tyr_Ser-Thr(54%),Pkinase(58%) 1 15 0 22 410 ENST00000624246.1 ENST00000222330.8 downstream downstream duplicates(1),mismatches(3) GAGGCTTGCCGGGAAGCGAAGTCCAATGGCCACCATCAGGGGCGTGTGAACGAAAG|AACCGAGAGCTGCAGATCATGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGAGATACTTTTTCTACTCCAGTGGCGAGAAG___AAAGACGAGCTTTACCTAAATCTGGTGCTGGAATATGTGCCCGAGACAGTGTACCGGGTGGCCCGCCACTTCACCAAGGCCAAGTTGACCATCCCTATCCTCTATGTCAAG___GTGTACATGTACCAGCTCTTCCGCAGCTTGGCCTACATCCACTCCCAGGGCGTGTGTCACCGCGACATCAAGCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27644 AUH::NTRK2 ENSG00000148090.12::ENSG00000148053.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4666 TRUE 1772 AUH ENSG00000148090.12 protein_coding - - chr9:91213815-91361918:- chr9:91325318:- chr9:93976097-94124200:- chr9:94087600:- NTRK2 ENSG00000148053.18 protein_coding + + chr9:84668375-85095751:+ chr9:85068417:+ chr9:87283290-87710666:+ chr9:87683332:+ chr9:91308701,chr9:91308713 chr9:85034231,chr9:85034220 NA NA chr9:94070983,chr9:94070995 chr9:87649146,chr9:87649135 NA NA sense sense out-of-frame CDS/splice-site intron inversion high none Enoyl-CoA_hydratase/isomerase(33%)| ECH_1(25%),ECH_2(22%)|PK_Tyr_Ser-Thr(16%) 3 4 8 120 6 ENST00000375731.9 unknown upstream upstream duplicates(2) CGGACCATAATAATCAGGAGTGAAGTCCCAGGGATATTCTGTGCTG___GTGCTGACCTTAAGGAAAGAGCCAAAATGAGTTCCAGTGAAGTTGGTCCTTTTGTCTCCAAAATAAGAGCAGTGATTAACGATATTG|GGGGAGTTTTCCTGCACAAGCCCTCTTCTCTTGTCTGCTGAGATGTGGGACATGCCTTTCACCTTCTGCCATGACTGTGAGCTCTCTCCAGCCACGTGG...TATCAGTAGTGTGAAAACAGACTAATACTGTAAATTGGTACCAGTAGAGTGGGACGCTACTG-AAAAGATACATGAAAATGTGGAAGCAACTTTGGAACTGGGTAATAGGCAGAGGCTGGAACAGTTTGGAGGGCTCAGTAGAAGACAGAAAAATGTGGGAAACTTTGGAA RTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDI|ggvflhkpsslvc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE BDNF/NT-3 growth factors receptor TK Trk Q16620 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Neurotrophic Receptor Tyrosine Kinase 2 1 Yes colorectal cancer, ganglioglioma, glioma, HNSCC, lung adenocarcinoma epithelial, other oncogene, fusion translocation, missense 27645 AUH::NTRK2 ENSG00000148090.12::ENSG00000148053.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4666 TRUE 1772 AUH ENSG00000148090.12 protein_coding - - chr9:91213815-91361918:- chr9:91325318:- chr9:93976097-94124200:- chr9:94087600:- NTRK2 ENSG00000148053.18 protein_coding + + chr9:84668375-85095751:+ chr9:85094991:+ chr9:87283290-87710666:+ chr9:87709906:+ chr9:91308701,chr9:91308713 chr9:85034231,chr9:85034220 NA NA chr9:94070983,chr9:94070995 chr9:87649146,chr9:87649135 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none Enoyl-CoA_hydratase/isomerase(33%)| ECH_1(25%),ECH_2(22%)|PK_Tyr_Ser-Thr(0%) 2 0 4 120 12 ENST00000375731.9 ENST00000687386.1 upstream upstream duplicates(2) CGGCACCTGGAGGAGGAGAACCGAG___GAATTGTGGTGCTTGGAATAAACAGAGCTTATGGCAAAAATTCACTCAGTAAAAATCTTATAAAAATG___CTATCAAAAGCTGTGGATGCTTTGAAATCTGATAAGAAAGTACGGAC...GGAGTGAAGTCCCAGGGATATTCTGTGCTG___GTGCTGACCTTAAGGAAAGAGCCAAAATGAGTTCCAGTGAAGTTGGTCCTTTTGTCTCCAAAATAAGAGCAGTGATTAACGATATTG|ATGGAGTATCACTCTGTCTGCCAGGCTGGAATGGAATGCAGTGGCATGATCTCAGCTCACTGCGACCTCCATCTCCCGGATTCAAGAGATTCTCCTGCCTCAGCCTCCCGAGAAGCTGGGATTACAGGTGCCTGCCGCCACACCCGGCTAATATTTTGTATTTTTAGTAgAGACGGG SEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDI|dgvslclpgwngmqwhdlsslrppspgfkrfsclslprswdyrclpphpanilyf* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE BDNF/NT-3 growth factors receptor TK Trk Q16620 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Neurotrophic Receptor Tyrosine Kinase 2 1 Yes colorectal cancer, ganglioglioma, glioma, HNSCC, lung adenocarcinoma epithelial, other oncogene, fusion translocation, missense 27646 ENSG00000268643::NUCB1 ENSG00000268643.2::ENSG00000104805.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000268643 ENSG00000268643.2 protein_coding - - chr19:42234583-42255132:- chr19:42239955:- chr19:42738735-42759284:- chr19:42744107:- NUCB1 ENSG00000104805.17 protein_coding + + chr19:48900050-48923473:+ chr19:48911149:+ chr19:49403307-49426730:+ chr19:49414406:+ chr19:42239254,chr19:42239256 chr19:48910620,chr19:48910618 NA NA chr19:42743406,chr19:42743408 chr19:49413877,chr19:49413875 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion high none |EF-hand_domain_pair(100%) Ets(100%),PK_Tyr_Ser-Thr(1%),Pkinase(1%)|EF-hand_7(100%) 1 6 8 329 787 ENST00000594664.1 ENST00000411700.6 upstream upstream duplicates(4) CGGCAGCGGCGGAGGAGGCAGCGGAGGCCCCGGCGCAGGCACTAGCTTCCCGCCGCCCGGGGTGAAGCTGGGCC___GTGACAGCGGGAAGGTGACCACAGTCGTAGCCACTCTAGGCCAAGGCCCAGAGCGCTCCCAAGAAGTGGCTTACACGGACATCAAAGTGATTGGCAATGGCTCATTTGGGGTCGTGTACCAGGCACGGCTGGCAGAGACCAGGGAACTAGTCGCCATCAAGAAGGTTCTCCAGGACAAGAGGTTCAAG|ATGTACAGGTGGATCATCTGAATCTCCTGAAACAGTTTGAACACCTGGACCCTCAGAACCAGCATACATTCGAGGCCCGCGACCTGGAGCTGCTGATCCAGACG___GCCACCCGGGACCTTGCCC...TAAGcAACACGAGAGACGGCGTTATCTGGAGTCACTGGGAGAGGAGCAGAGAAAGGAGGCGGAGAGGAAGCTGGAAGAGCAACAGCGCCGGCACCGCGAGC...CCTAGATTCTGACCCTTCTAGGACCTGAATGCTAAGAGGGGTGTGTCTGTCCCAGGAGGGCTTAGTCAGGCCCAAGAGCCAAGCCTATGTCCCCTGGT gsggggsggpgagtsfpppgvklgrDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFK|myrwii* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27647 ENSG00000272657::SLC37A1 ENSG00000272657.1::ENSG00000160190.14 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4667 TRUE 1773 ENSG00000272657 ENSG00000272657.1 lncRNA + + chr21:34073592-34360033:+ chr21:34073745:+ chr21:35445892-35732332:+ chr21:35446045:+ SLC37A1 ENSG00000160190.14 protein_coding + + chr21:42496008-42581440:+ chr21:42534698:+ chr21:43916118-44001550:+ chr21:43954808:+ chr21:34152680,chr21:34152680 chr21:42527486,chr21:42527483 NA NA chr21:35524980,chr21:35524980 chr21:43947596,chr21:43947593 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Major_Facilitator_Superfamily(100%) |MFS_1(100%) 3 1 11 696 111 ENST00000362077.4 ENST00000398341.7 downstream upstream duplicates(3) GGGAGCCGTCCGGCGCAGCAGTTTCTAGGTCCCCACTGTCCCCGCCGTCCCGCCCCTTCGCGTCCCGGGAACCGGCTGGCTTCCGAGCCGCACTCGCCGATCCTCCAGGCATGCCCCGCTACGAGCTGGCTTTAATCCTGAAAGCCATGCAGCGG|GGTGAGCTCCACAAGTACTGCACTGCTTGGGATGAAGCTGACGTCAGGTTCAGCAGCCAGAACAGGAAGTCTGGGTCCGCTGCCCCCCACCAGCTCCCTGACAATGAGACCGACTGTGGCTGGGCACCGTTTG___ATAAGAACAACTATCAGCAGCTGCTTGGGGCCCTGGACTACTCCTTCC...GGGGATGTACCTCAG___TGGCATCATTGGGGAGCGCCTGCCGATTAGGTATTACCTAACTTTCGGGATGCTCGCCAGCGGAGCCTTCACCGCCCTGTTCGGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27648 ENSG00000272657::SLC37A1 ENSG00000272657.1::ENSG00000160190.14 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4667 TRUE 1773 ENSG00000272657 ENSG00000272657.1 lncRNA + + chr21:34073592-34360033:+ chr21:34125480:+ chr21:35445892-35732332:+ chr21:35497780:+ SLC37A1 ENSG00000160190.14 protein_coding + + chr21:42496008-42581440:+ chr21:42534698:+ chr21:43916118-44001550:+ chr21:43954808:+ chr21:34152680,chr21:34152680 chr21:42527486,chr21:42527483 NA NA chr21:35524980,chr21:35524980 chr21:43947596,chr21:43947593 NA NA sense sense unknown exon/splice-site CDS/splice-site deletion high none |Major_Facilitator_Superfamily(100%) |MFS_1(100%) 0 1 14 933 111 ENST00000362077.4 ENST00000398341.7 downstream upstream duplicates(3),mismatches(1) AGCAGTTTCTAGGTCCCCACTGTCCCCGCCGTCCCGCCCCTTCGCGTCCCGGGAACCGGCTGGCTTCCtAGCCGCcCTCGCCGcTCCTCCAGGCATGCCCCGCTACGAGCTGGCTTTAATCCTGAAAGCCATGCAGCGG___CCAGAGACTGCTGCTACTTTGAAACGTACGATAGAGGCCCTGATGGACAGAGGAGCAATAGTGAGGGACTTGGAAAACCTGGGTGAACGAGCGCTTCCTTATAGGATCTCTGCCCACAGTCAGCAGCACAACAGAGGCGG|GGTGAGCTCCACAAGTACTGCACTGCTTGGGATGAAGCTGACGTCAGGTTCAGCAGCCAGAACAGGAAGTCTGGGTCCGCTGCCCCCCACCAGCTCCCTGACAATGAGACCGACTGTGGCTGGGCACCGTTTG___ATAAGAACAACTATCAGCAGCTGCTTGGGGCCCTGGACTACTCCTTCCTGTGCGCCTATGCCGTGGGGATGTACCTCAG___TGGCATCATTGGGGAGCGCCTGCCG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27649 TDRD3::DMTF1 ENSG00000083544.16::ENSG00000135164.19 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2569 FALSE NA FALSE NA TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60535233:+ chr13:60970591-61148012:+ chr13:61109367:+ DMTF1 ENSG00000135164.19 protein_coding + + chr7:87152409-87196337:+ chr7:87181309:+ chr7:86781725-86825653:+ chr7:86810625:+ chr13:60566714 chr7:87181149 NA NA chr13:61140848 chr7:86810465 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation high none RecQ_mediated_genome_instability_protein(100%),Tudor_domain(100%),UBA/TS-N_domain(100%)|Myb-like_DNA-binding_domain(98%) RMI1_N(100%),SMN(15%),TUDOR(100%),UBA(100%)|Myb_DNA-bind_6(100%),Myb_DNA-binding(56%) 0 4 8 63 138 ENST00000196169.7 ENST00000413276.6 downstream upstream duplicates(1) GTGGAAACCTGGAGATGAATGTTTTGCACTTTATTGGGAAGACAACAAG___TTTTACCGGGCAGAAGTTGAAGCCCTCCATTCTTCGGGTATGACAGCAGTTGTTAAATTCATTGACTACGGAAACTATGAAGAGGTGCTACTGAGCAATATCAAGCCCATTCAAACAGAGGCATGG|ATATACACCTGAAGAAATTGAGAAGCTCAAGGA___GCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCGCTAGGAAGAAGTGCATCTTCTGTCAAAGATCGGTGCCGACTGATGAAGGATACTTGCAACACAG___GGAAGTGGACAGAAGAAGAAGAAAAGAGACTTGCAGAAGTGGTTCATGgGTTGACAAGCACTGAG WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAW|iyt* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27651 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4668 TRUE 1774 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 2 2 5 16 136 ENST00000701330.1 ENST00000337414.9 upstream downstream duplicates(1),mismatches(1) GGAAGGTTGTCTGCTCCAGAGGCTTCCCTAGAGTGAAGAGCTCTACTATGTATGCTTTATGCGGCAGAAGGAGTGCTTTGGAGGAGTTTTTAAATTTGTTT...CTTTGCTAAGGCCTAAATGAATGAAG___TGCAGGTGCAGGACCGGAAGCAGAAGACAGAAAGTGGAGACCAGATGTTTGAAGCTGGGTAAAGGCAGGGATGGAGCAGGAACCGAGGAACAAACCTTGGAACTAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTC...GGAAATAAAAGACAAAACAAAGAACTCTCAAGCAGTAACTCATCTCTCAGCTCAACCTCAGAAACACCGAATGAGTCAACGTCCCCAAACACCCCGGAACC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27652 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4668 TRUE 1774 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:10944205:- chrX:10865697-11129340:- chrX:10962325:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 1 0 6 7 136 ENST00000669054.1 ENST00000337414.9 upstream downstream duplicates(1),mismatches(1) CCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTC...CCTTCCCAGAAGTAGAAGCCTGCACAGTCCACAGAACT___CTGGGACCATTTAGTTGCAGAAAAACAAGCTCAGGGCGCTCACTGATTCTACATTATG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27653 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4668 TRUE 1774 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:10963882:- chrX:10865697-11129340:- chrX:10982002:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 0 1 5 0 136 ENST00000658066.1 ENST00000337414.9 upstream downstream duplicates(2),mismatches(1) ATTGCCGAGCCCCATAGAAGACATAATTTACAAGAAACTCATAGAGACTCAAAAT|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27654 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4668 TRUE 1774 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 1 0 5 47 136 ENST00000669054.1 ENST00000337414.9 upstream downstream duplicates(1),mismatches(1) CTTCGGTGGTGGgGATCCAAAAGTGAACAAGACAGTGTTCTGGCTGCTAAATTCTTCTTAACTGG___TTATGCCTGGAGACCTTCACTTGGTTCTGTGCCAGCACTGCCCATGAACTTCATAGACTGTGATCTTTGCTAAGGCCTAAATGAATGAAG|GGTGATTTCACCTGGAACAGCATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGCTGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAG___ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG___AATTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27655 HCCS-DT::ARHGAP6 ENSG00000234129.10::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4668 TRUE 1774 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11196996:- chrX:11135771-11684040:- chrX:11215116:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |RhoGAP_domain(100%) |Cyto_heme_lyase(100%),RhoGAP(100%) 0 1 0 16 186 ENST00000669054.1 ENST00000337414.9 upstream downstream none AACCGAGGAACAAACCTTGGAACTAG|ATGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27657 TBC1D22A::ATXN10 ENSG00000054611.14::ENSG00000130638.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4669 TRUE 1775 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:47037198:+ chr22:47158514-47571342:+ chr22:47433094:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45842954:+ chr22:46067678-46241187:+ chr22:46238834:+ chr22:47106577,chr22:47106577 chr22:45822557,chr22:45822546 NA NA chr22:47502473,chr22:47502473 chr22:46218437,chr22:46218426 NA NA sense sense in-frame CDS/splice-site intron duplication high none Rab-GTPase-TBC_domain(89%)|Spinocerebellar_ataxia_type_10_protein_domain(50%) RabGAP-TBC(68%)|Atx10homo_assoc(0%) 1 1 7 736 19 ENST00000380995.5 ENST00000381061.8 downstream upstream mismatches(1) AACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGTTAGAAGAACTCGTGAGCCGGATTGATG___AGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAG|GAAAGTACGTTGTCACATTCCTTCACTCTGGCTCCAGTTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGGAGGAACAGGGGCTGGCAGATGCATCCCTACTTAAAAAAGTGGGTTTTGAAGTTGAAAAGAAAGGCGAAAAGCTGATCCTGAAATCTACTAGAGACACCCCTAAGCCA___TGAATGAAC NYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ|estlshsftlapvLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27658 TBC1D22A::ATXN10 ENSG00000054611.14::ENSG00000130638.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4669 TRUE 1775 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:47037198:+ chr22:47158514-47571342:+ chr22:47433094:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45842991:+ chr22:46067678-46241187:+ chr22:46238871:+ chr22:47106577,chr22:47106577 chr22:45822557,chr22:45822546 NA NA chr22:47502473,chr22:47502473 chr22:46218437,chr22:46218426 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication medium none Rab-GTPase-TBC_domain(89%)|Spinocerebellar_ataxia_type_10_protein_domain(50%) RabGAP-TBC(68%)|Atx10homo_assoc(0%) 2 0 7 736 2070 ENST00000380995.5 ENST00000381061.8 downstream upstream mismatches(1) TGTTAGAAGAACTCGTGAGCCGGATTGATG___AGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAG|TTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGGAGGAACAGGGGCTGGCAGATGCATCCCTACTTAAAAAAGTGGGTTTTGAAGTTGAAAAGAAAGGCGAAAAGCTGATCCTGAAATCTACTAGAGACACCCCTAAGCCA___TGAATGAACTACATCCAAATACCTGAATTTTTGGAATCTGTTTCATtGATTTTTCATCTTCTACCGTATGTGAAATTGCAAGTGTTTGAAG LEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ|f* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27659 TBC1D22A::ATXN10 ENSG00000054611.14::ENSG00000130638.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE TRUE 2572 TRUE 4669 TRUE 1775 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46997709:+ chr22:47158514-47571342:+ chr22:47393605:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45842991:+ chr22:46067678-46241187:+ chr22:46238871:+ chr22:47106577,chr22:47106577 chr22:45822557,chr22:45822546 NA NA chr22:47502473,chr22:47502473 chr22:46218437,chr22:46218426 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication medium none Rab-GTPase-TBC_domain(71%)|Spinocerebellar_ataxia_type_10_protein_domain(50%) RabGAP-TBC(51%)|Atx10homo_assoc(0%) 1 1 6 852 2070 ENST00000380995.5 ENST00000381061.8 downstream upstream duplicates(1),low_entropy(2),mismatches(1) CTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATACATAG___AGGCAGAGGAGGTGGACACGGTGGACGTCTCCGGCGTGCCCGCAGAGGTGCTGTGCAACATCGAGGCCGACACCTACTGGTGCATGAGCAAGCTGCTGGATGGCATTCAG___GACAACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGTTAGAAGAACTCGTGAGCCGGATTGATG|TTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGGAGGAACAGGGGCTGGCAGATGCATCCCTACTTAAAAAAGTGGGTTTTGAAGTTGAAAAGAAAGGCGAAAAGCTGATCCTGAA...CCCTAAGCCA___TGAATGAACTACATCCAAATACCTGAATTTTTGGAATCTGTTTCATtGATTTTTCATCTTCTACCGTATGTGAAATTGCAAGTGTTTGAAG...AAAGTGAAAGTAACTGAGTGTTCTCTTGTTTCTTTGCATTAATGTAACTGTGTGGTTTGCCTTTGTCCCCCTGGATAGAACGTGCATTTAAAGAATATATT LVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRID|vLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLIL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27661 ENSG00000228010::USP42 ENSG00000228010.6::ENSG00000106346.12 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000228010 ENSG00000228010.6 lncRNA + + chr7:6663974-6708901:+ chr7:6665108:+ chr7:6703605-6748532:+ chr7:6704739:+ USP42 ENSG00000106346.12 protein_coding + + chr7:6104949-6161564:+ chr7:6159450:+ chr7:6144580-6201195:+ chr7:6199081:+ chr7:6674468 chr7:6158890 NA NA chr7:6714099 chr7:6198521 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none none none 1 3 2 4 103 ENST00000366167.2 ENST00000306177.10 downstream upstream duplicates(1) TGCGGCTTCGCGGGGCTGACCGTGCGCTTCGCCTGCGGGGTCGTGCTGGGGCGGCGG___GTACGCTATTTGAAGAACAGGTTTCCATGCTCTTAGAGGAGCATCAGAAAATGAACAAACCCCAG|GTGATTGAAAACTCAGCCTCAAAACAAAAAATTCACTAGTTATG___ATTCAACGCGTTCAACAGAAGCCATCCCCAGCCCAGCTTAAATTATAAAGATAGAC...GCTTCTTTAGTAAATACTGTACAGATTTTACCATGGAGAACTTTTTTTTTAGTTTTTACCTTTTCTTAATTACCCTTATTCCGAATGGACGAACACTTTCT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27667 ZNF776::WDR88 ENSG00000152443.13::ENSG00000166359.11 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4670 FALSE NA ZNF776 ENSG00000152443.13 protein_coding + + chr19:57746815-57758148:+ chr19:57755691:+ chr19:58258183-58269516:+ chr19:58267059:+ WDR88 ENSG00000166359.11 protein_coding + + chr19:33132090-33175799:+ chr19:33151181:+ chr19:33622996-33666705:+ chr19:33642087:+ chr19:57755926,chr19:57755927 chr19:33149843,chr19:33149841 NA NA chr19:58267294,chr19:58267295 chr19:33640749,chr19:33640747 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site duplication high none KRAB_box(100%),Zinc_finger__C2H2_type(100%)|WD_domain__G-beta_repeat(77%) KRAB(100%),zf-C2H2(100%),zf-C2H2_6(100%),zf-met(100%)|WD40(46%) 1 0 3 126 2 ENST00000489376.1 ENST00000361680.6 downstream upstream none CTTTTGAGTGCAGAGCATTTGCGAGGGCTTCACTCTTCTTTCACTGGATACCAGAATGTTGACAGGAGAAAAATAACATAGATGTGTGGGAATATTACTTCTTGTCCAGTGTAACTGTGGGAGAGAGCCCTTATGAGGACACCATCAACCTATATTGAATGTCATATGTCCAGTAGCTGCATAAATTCCAG|ATCATCACACAAGGTCCATCACGTCATGCTGCTTTGAC...TTACATCCCAGGCCACGCTGCTCACCATCACTAAGTGAGTTGGACCCCAGGAGGCCAGAAGGGAGTTTGGGTGGGGCGTCCCCATTCATGcCTTCCTGAATTCCACATAAGCCAGCATCC...___GGCCATAATGACTGGGTGATGGATGTTGCCATTAGCAACAACAAGAAATGGATCCTGTCTGCTTCCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27669 ENSG00000285679::STS ENSG00000285679.2::ENSG00000101846.9 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000285679 ENSG00000285679.2 lncRNA + + chrX:7928443-8374386:+ chrX:7929413:+ chrX:7896484-8342427:+ chrX:7897454:+ STS ENSG00000101846.9 protein_coding + + chrX:7147237-7804358:+ chrX:7803301:+ chrX:7065278-7772399:+ chrX:7771342:+ chrX:7933344,chrX:7933344 chrX:7789051,chrX:7789048 NA NA chrX:7901385,chrX:7901385 chrX:7757092,chrX:7757089 NA NA sense sense unknown exon/splice-site 3'UTR/splice-site duplication high none none none 1 0 3 11 7 ENST00000659022.1 ENST00000664306.2 downstream upstream none ATTTACAGAACCAGAATCTGGGATGCTGTTTACAGAGCAAGTTATTTCCTGCATTTGGACACTGTCAGCAGGTCGATTCAGGAGACAGGTGAAAACTTTATCACCGGGCAGCCTGGATGAACACCACAACTTTGATATCTTTCACTTAAAGGAAAGATAAGGGCATCCACTATTTCTACACCTGGCTGGCAGAGTGAGAGCTCACCAAAG|ACTGCATTTGCAACGATGCATGTCTGCAAGACCCCATGGACAACTTTCATCTGATGCACGCACTCATTCTTGCTTTGACACTCCAAGCCAAGTCACATTTGTTTCCACCAAGTCAG...ACTTCGATGGCTCTCTGCATCTCACTATATCTCTGTCCTGCTGATGCCACCAAATGACCAGAGATGGTCCAGACAATTTACAAGAAAGGACGTGGGCAAGCCTCATGCAAAGTAAGAAATAGCTAGCTTGTCTTTGGTATTTAGCAATGTTTAAATTGATTTGCTCTTTCC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27671 MCF2L2::C17orf99 ENSG00000053524.13::ENSG00000187997.12 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MCF2L2 ENSG00000053524.13 protein_coding - - chr3:183178041-183428778:- chr3:183295300:- chr3:182895829-183146566:- chr3:183013088:- C17orf99 ENSG00000187997.12 protein_coding + + chr17:78146385-78166297:+ chr17:78160955:+ chr17:76142466-76162378:+ chr17:76157036:+ chr3:183291125,chr3:183291127,chr3:183291127 chr17:78148700,chr17:78148498,chr17:78148698 NA NA chr3:183008913,chr3:183008915,chr3:183008915 chr17:76144781,chr17:76144579,chr17:76144779 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none Divergent_CRAL/TRIO_domain(100%)|C17orf99_Ig_domain(100%) CRAL_TRIO_2(100%)|Ig_C17orf99(100%) 0 1 1 69 8 ENST00000328913.8 ENST00000340363.10 upstream upstream duplicates(1),low_entropy(1) GTCCAGGAAATATTTCACAAGAGGCAAGTGAGTCTGATGAAACTGGCAGCCAAACAGACTCGTCCAGTGCAACCTGTGGCCCCACATCCTGAGTCTTCACCAAAATGGGTGTCATCAAAAACCAGCCAGCCCTCCACCTCGG|AAATTACCCCTGTGGTCTCCATTGCCTACAAAGTCCTGGAAGTTTTCCCCAAAGGCCGCTGGGTGCTCATAACCTGCTGTGCACCCCAG VQEIFHKRQVSLMKLAAKQTRPVQPVAPHPESSPKWVSSKTSQPSTS|eITPVVSIAYKVLEVFPKGRWVLITCCAP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27680 ERP44::STX17 ENSG00000023318.9::ENSG00000136874.11 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ERP44 ENSG00000023318.9 protein_coding - - chr9:99979185-100099052:- chr9:100057820:- chr9:102741467-102861334:- chr9:102820102:- STX17 ENSG00000136874.11 protein_coding + - chr9:99906654-99974534:+ chr9:99955159:- chr9:102668936-102736816:+ chr9:102717441:- chr9:100055399,chr9:100055405 chr9:99956411,chr9:99956414 NA NA chr9:102817681,chr9:102817687 chr9:102718693,chr9:102718696 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/read-through/5'-5' medium none Thioredoxin(24%)| HyaE(6%),Thioredoxin(5%)| 5 3 20 330 20 ENST00000262455.7 unknown upstream downstream duplicates(3),mismatches(3) CGAGAGGACGAGGTGCCGCTGCCTGGAGAATCCTCCGCTGCCGTCGGCTCCCGGAGCCCAGCCCTTTCCTAACCCAACCCAACCTAGCCCAGTCCCAGCCGCCAGCGCCTGTCCCTGTCACGGACCCCAGCGTTACCATGCATCCTGCCGTCTTCCTATCCTTACCCGACCTCAGATGCTCCCTTCTGCTCCTGGT...GGTAACTTGGGTTTTTACTCCTGTAACAACTGAAATAACAAGTCTTGATACAGAGAATATAGATGAAATTTTAA___ACAATGCTGATGTTGCTTTAGTAAATTTTTATGCTGACTG|TGTGTGTCCTGAGAGTAAAGAAAGACAAAAATGGAGAGAAGCACTGATTCACTCTGTATGACTTGAATCACCTTTCTAAATACAAATCAGATTTGGAGGCTCCTCACTTCACTTGGTGGAAAGCAATATGCTAAAAATGAAACCAGACACACAAGTGAGACAGAAGGGAGTTTCTCAGATCAAGAAGATTGGCAGAGAAGATTTGCTTTAGGAACTCTCGGAATCTG...ATTTTTGATCTTACTCATGGAAATGTGGCAACATTGCTTCTGAATCTCTGCTGATGTTTCCAACCAATTTATTTAGAATCAGATTGAATTTGTAAAGTAAA VTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADc|vcpeskerqkwrealihsv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27682 KRT8::RAB6A ENSG00000170421.13::ENSG00000175582.20 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KRT8 ENSG00000170421.13 protein_coding - - chr12:52897187-52949954:- chr12:52949456:- chr12:53290971-53343738:- chr12:53343240:- RAB6A ENSG00000175582.20 protein_coding - - chr11:73675638-73761137:- chr11:73679720:- chr11:73386683-73472182:- chr11:73390765:- chr12:52949120,chr12:52949122,chr12:52949122 chr11:73690907,chr11:73690894,chr11:73690906 NA NA chr12:53342904,chr12:53342906,chr12:53342906 chr11:73401952,chr11:73401939,chr11:73401951 NA NA sense sense unknown CDS/splice-site CDS/splice-site translocation medium none |Ras_family(3%) |Arf(0%),Ras(0%),Roc(0%) 7 6 3 19843 691 ENST00000552551.5 ENST00000310653.10 upstream downstream duplicates(1),mismatches(1) CCCAGAGCTGGCAATCTGGGCTTGTAGGCCTTTTACTTC___CTCTTCGTGGTTCTTCTTCATGAAGAGCAGCTCCTCCTTGAGAGCCTCGATCTCTGTCTCCAGCTGCAGTCGTGTGATATTGGTGTCATCAATGACCTTGCGGAGCCCATGGATGTCGTTC...GCCAGCTCTGTCTCATAC___TTGACTCTAAAGTCATCAGCAGCAAGACGGGCATTGTCAATCTGCAGAACGATGCGGGCATTGTCCACAGTATTTGCGAAGAT___CTGAGCCCTCAGGTCCTCGATGATCTTGAAGTAATGGCTCCAGTCTCTGACCTGGGGTCCCTTCTTCTCCAAGTGCTCCCGGATTTTGCTCTCCAGCCTCCGGTTCTCGGTCTCCAGGCTCCTCACTCTGTCCAG|CTCTTTCGACGTGTAGCAGCAGCTTTGCCGGGAATGGAAAGCACACAGGACAGAAGCAGAGAAGATA___TGATTGACATAAAACTGGAAAAGCCTCAGGAGCAACCAGTCAGTGAAGGAGGCTGTTCCTGCTAATCTCCCATGTCATCTTCAACCTTCTTCAGAAGCTCACTGCTTTGG...TGACTGCAGTGTGAATATTGGCTTGAACCTTTTCCCTTCAGTAATAACGTATTGCAATTCATCATTGCTGCCTGTCTCGTGGAGATGATCTATTAGCTTCAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27711 ENSG00000279539::ENSG00000268643 ENSG00000279539.1::ENSG00000268643.2 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000279539 ENSG00000279539.1 TEC + + chr19:42242775-42244973:+ chr19:42243395:+ chr19:42746927-42749125:+ chr19:42747547:+ ENSG00000268643 ENSG00000268643.2 protein_coding - - chr19:42234583-42255132:- chr19:42236941:- chr19:42738735-42759284:- chr19:42741093:- chr19:42244086,chr19:42244084 chr19:42239557,chr19:42239559 NA NA chr19:42748238,chr19:42748236 chr19:42743709,chr19:42743711 NA NA sense sense unknown exon CDS/splice-site inversion low none none |Kdo(100%),PK_Tyr_Ser-Thr(54%),Pkinase(58%) 1 13 0 22 410 ENST00000624246.1 ENST00000594664.1 downstream downstream duplicates(1),mismatches(3) GAGGCTTGCCGGGAAGCGAAGTCCAATGGCCACCATCAGGGGCGTGTGAACGAAAG|AACCGAGAGCTGCAGATCATGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGAGATACTTTTTCTACTCCAGTGGCGAGAAG___AAAGACGAGCTTTACCTAAATCTGGTGCTGGAATATGTGCCCGAGACAGTGTACCGGGTGGCCCGCCACTTCACCAAGGCCAAGTTGACCATCCCTATCCTCTATGTCAAG___GTGTACATGTACCAGCTCTTCCGCAGCTTGGCCTACATCCACTCCCAGGGCGTGTGTCACCGC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27718 ARL13B::NSUN3 ENSG00000169379.17::ENSG00000178694.10 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARL13B ENSG00000169379.17 protein_coding + + chr3:93980139-94055678:+ chr3:94003908:+ chr3:93698983-93774522:+ chr3:93722752:+ NSUN3 ENSG00000178694.10 protein_coding + + chr3:94062980-94131832:+ chr3:94084107:+ chr3:93781824-93850676:+ chr3:93802951:+ chr3:94035954 chr3:94082592 NA NA chr3:93754798 chr3:93801436 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none ADP-ribosylation_factor_family(70%)|16S_rRNA_methyltransferase_RsmB/F(100%) Arf(41%),Ras(20%),Roc(20%),SRPRB(20%)|Methyltr_RsmB-F(100%) 1 1 2 255 128 ENST00000535334.5 ENST00000314622.9 downstream upstream duplicates(1) GCGACCCGGGATGTTCAGTCTGATGGCCAGTTGCTGCGGCTGGTTCAAGCGGTGGCGGGAGCCTGTCAG___AATACCCTGAAGATGTAGCTCCTACTGTTGGATTTTCAAAAATTAACCTTAGACAAGGAAAGTTTGAAGTCACCATCTTTGACTTGGGAGGTGGAATAAGAATTCGGGGAATCTGGAAGAATTACTATGCTGAATCCTATGGGGTAATATTTGTTGTGGATT...ATGGAAGAGACAAAAGAGGCTATGTCAGAAATGCTAAGACATCCTAGGATATCGGGAAAGCCTATATTGGT|GGAGATACTAACATCTCCATCATGCTGGCAATATGCTGTCCTGCTTAACCGATTCAATTATCCTTTTGAACTGGAAAAGGATT...CCTAAATCAGTGAAGTGTTACCTTAGCAGAACTCCGGGCCGAATCCCTTCAGAAAGACACCAAATTGGAAACCTGAAAAAATATTATCTCCTAAATGCTGC...CTCTGGAATTAAGGGATGGGGAGAAGGTTCTGGATCTCTGTGCTGCTCCTGGAGGGAAATCAATAGCTCTGCTGCAGTGTGCTTGTCCAG___GTTATCTTCAT MEETKEAMSEMLRHPRISGKPILv|EILTSPSCWQYAVLLNRFNYPFELEKD NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27724 KIAA1328::ENSG00000267707 ENSG00000150477.15::ENSG00000267707.2 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA1328 ENSG00000150477.15 protein_coding + + chr18:36829106-37232172:+ chr18:37160381:+ chr18:34409069-34812135:+ chr18:34740344:+ ENSG00000267707 ENSG00000267707.2 lncRNA + + chr18:37243776-37247506:+ chr18:37246890:+ chr18:34823739-34827469:+ chr18:34826853:+ chr18:37161808,chr18:37161804 chr18:37246317,chr18:37246310 NA NA chr18:34741771,chr18:34741767 chr18:34826280,chr18:34826273 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion/read-through low none Uncharacterised_protein_KIAA1328(100%)| KIAA1328(100%)| 3 0 0 8 7 ENST00000591619.5 ENST00000589281.2 downstream upstream none AAAAGGAGCGCCTTCAGCATCTGCTGGCCCAGCAGGAGACAAAGCTTCTTCTAAAACAGCAGCAGCTTCACCAGTCTCGACTGGAcTACAATTG...CTGGCTGCTTGGAACATCATCATCTATTAAAAAGCACCAAGACCCCCCAAACAGTGGAGAGAATAGGAAGGAGAGGAAGACAGTTGGGTTTCATTCGCATATGAAAGATGATGCCCAGTGGTCATGTCAAAAGAAAGATACATGTAGACCCCAAAGAG|AGAAGCATAAAAAAACGCTGAACAAGAAAAACCAAACAACAGAAAGTAAAACCACTG WLLGTSSSIKKHQDPPNSGENRKERKTVGFHSHMKDDAQWSCQKKDTCRPQR|ekhkktlnkknqttesktt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27730 PPM1D::CASC8 ENSG00000170836.13::ENSG00000246228.7 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA PPM1D ENSG00000170836.13 protein_coding + + chr17:60600193-60666280:+ chr17:60600886:+ chr17:58677554-58743641:+ chr17:58678247:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Protein_phosphatase_2C(30%)| PP2C(0%)| 0 2 0 52 111 ENST00000305921.8 ENST00000502082.5 downstream downstream none GGCTAAGGTTTGCGCTGCCATCCGCAAAGGCTTTCTCGCTTGTCACCTTGCCATGTGGAAGAAACTGG|GTTGCAAGAAAGCTCAAGTAGCCTATGGAGAGGATGCAAGGCTTCCAGCTGATGCCCTCAGCCAGGCTCAGTAGCAGCCAGAACTAGCCTACCAACGAACCTGCTGATCATGTGCATAAGCCACCTTGAACGTCGATCCTCCTGCCTGGTGGAGCCATC AKVCAAIRKGFLACHLAMWKKL|gckkaqvaygedarlpadalsqaq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase, Mg2+/Mn2+ dependent 1D 1 Yes glioma, ovarian cancer, breast cancer epithelial oncogene amplification, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 27735 LRMDA::SAMD8 ENSG00000148655.16::ENSG00000156671.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75150514:+ chr10:76859344-76941881:+ chr10:76910272:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none Leucine-rich_repeat(15%)|PAP2_superfamily_C-terminal(100%),SAM_domain_(Sterile_alpha_motif)(100%) LRR_9(0%)|PAP2_C(100%),SAM_1(100%) 0 1 1 11 183 ENST00000611255.5 ENST00000671730.1 downstream upstream none CGCTGCTGCCGCCGCGaCCCCGCGCTCCGTCCCGCGCGCCCGCAGCGTCCTGGCCGCCATGGCCGGGCTCGTGGTGCGTGGAACTCAA___GTGTCCTACATAG...CAAAGAGGCTTGATCTGAGCTTTAACCTTCTGAG|GCAGCGGAGGAGGAAATGGCAGGTCCTAATCAACTCTGCATTCGCCGCTGGACTACCAAGCATGTAGCTGTGTGGCTGAAGGATGAA KRLDLSFNLLr|qrrrkwqvlinsafaaglpsm* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27749 CLSTN1::CTNNBIP1 ENSG00000171603.18::ENSG00000178585.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CLSTN1 ENSG00000171603.18 protein_coding - - chr1:9728926-9823984:- chr1:9823643:- chr1:9788984-9884042:- chr1:9883701:- CTNNBIP1 ENSG00000178585.15 protein_coding - - chr1:9848276-9910336:- chr1:9850776:- chr1:9908334-9970394:- chr1:9910834:- chr1:9816119 chr1:9852617 NA NA chr1:9876177 chr1:9912675 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none |Beta-catenin-interacting_protein_ICAT(20%) |ICAT(0%) 0 2 0 63 187 ENST00000377298.9 ENST00000377263.6 upstream downstream none CGGCCGCCCGGCTGCTGCTGGCCGGGCTGCTGTGCGGCGGCGGGGTCTGGGCCGCGCGAG|GTGCAGAGGACGTGGTGATGGCGTTTTCCAGGTCGGAGACGGAAGACCGGAGGCAGTAGCTGCAAAGCCCTTGGAACACCCTGGATGCTGTTGAGGGCCAAGAGATCTGTGTGGC AARLLLAGLLCGGGVWAAR|gAEDVVMAFSRSETEDRRQ* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Breast invasive carcinoma LUNG,BREAST no_match 9809519,9833330 FALSE,FALSE 9910834,9910834 TRUE,TRUE YES,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27753 DUSP22::STMND1 ENSG00000112679.15::ENSG00000230873.9 EOL1 SRR8616218 SRR8639143 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE TRUE 2575 TRUE 4677 TRUE 1776 DUSP22 ENSG00000112679.15 protein_coding + + chr6:291630-351355:+ chr6:311962:+ chr6:291630-351355:+ chr6:311962:+ STMND1 ENSG00000230873.9 protein_coding + + chr6:17102050-17131378:+ chr6:17114962:+ chr6:17102281-17131609:+ chr6:17115193:+ chr6:323706,chr6:323704 chr6:17105628,chr6:17105623 NA NA chr6:323706,chr6:323704 chr6:17105859,chr6:17105854 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion high none Dual_specificity_phosphatase__catalytic_domain(27%)|Stathmin_family(100%) DSPc(16%)|Stathmin(100%) 38 17 24 499 80 ENST00000344450.9 ENST00000536551.6 downstream upstream duplicates(8),mismatches(11) CGCTAGCGTTCGCCTTCAGCCACCATGGGGAATGGGATGAACAAG___ATCCTGCCCGGCCTGTACATCGGCAACTTCAAAG___ATGCCAGAGACGCGGAACAATTGAGCAAGAACAAGGTGACACATATTCTGTCTGTCCACGATAGTGCCAGGCCTATGTTGGAG|GCTGATGTCAGTGTGCCTCATACTGGGGAAAATTGCAGCCCCCGGATGGAAGCTGCTCTGACCAAGAATACTGTGGACATTGCAGAAGGCCTGGAACAAGTCCAGATGGGAAGCTTACCTGGAACCATTTCAGAAAATTCTCCATCTCCTAGTGAAAGAAACAGACGAGTAAATTCAG___ACCTAGTGACCAATGGATTAATCAATAAACCCC MGNGMNKILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSARPMLE|ADVSVPHTGENCSPRMEAALTKNTVDIAEGLEQVQMGSLPGTISENSPSPSERNRRVNSDLVTNGLINKP NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27754 DUSP22::STMND1 ENSG00000112679.15::ENSG00000230873.9 EOL1 SRR8616218 SRR8639143 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA TRUE 4677 TRUE 1776 DUSP22 ENSG00000112679.15 protein_coding + + chr6:291630-351355:+ chr6:304661:+ chr6:291630-351355:+ chr6:304661:+ STMND1 ENSG00000230873.9 protein_coding + + chr6:17102050-17131378:+ chr6:17114962:+ chr6:17102281-17131609:+ chr6:17115193:+ chr6:323706,chr6:323704 chr6:17105628,chr6:17105623 NA NA chr6:323706,chr6:323704 chr6:17105859,chr6:17105854 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion high none Dual_specificity_phosphatase__catalytic_domain(5%)|Stathmin_family(100%) DSPc(0%)|Stathmin(100%) 0 2 5 665 80 ENST00000344450.9 ENST00000536551.6 downstream upstream none CCATAGTGCGCCTGCGACCACACGGCCGGGGCGCTAGCGTTCGCCTTCAGCCACCATGGGGAATGGGATGAACAAG___ATCCTGCCCGGCCTGTACATCGGCAACTTCAAAG|GCTGATGTCAGTGTGCCTCATACTGGGGAAAATTGCAGCCCCCGGATGGAAGCTGCTCTGACCAAGAATACTGTGGACATTGCAGAAGGCCTGGAACAAGTCCAGATGGGAAGCTTACCTGGAACCATTTCAGAAAATTCTCCATCTCCTAGTGAAAGAAACAGACGAGTAAATTCAG___ACCTAGTGAC MGNGMNKILPGLYIGNFK|g* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27762 CD2AP::LINC01266 ENSG00000198087.7::ENSG00000224957.7 EOL1 SRR8616218 SRR8639143 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA CD2AP ENSG00000198087.7 protein_coding + + chr6:47477789-47627263:+ chr6:47503440:+ chr6:47445525-47594999:+ chr6:47471176:+ LINC01266 ENSG00000224957.7 lncRNA + - chr3:536062-846561:+ chr3:672605:- chr3:577745-888244:+ chr3:714289:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Variant_SH3_domain(50%)| SH3_1(0%),SH3_2(0%),SH3_9(0%)| 2 0 0 48 0 ENST00000359314.5 unknown downstream downstream none TATGACTATGATGCTGTACATGATGATGAATTAACTATTCGAGTTGGAGAAATCATCAGGAATGTGAAAAAGCTACAGGAGGAAGGGTGGCTGGAAGGAGAACTAAATGGGAGAAGAGGAATGTTCCCTGACAATTTCGTTAAG|ACAGTTCATAAATAGTGTATAAAAATGCTACTGAGACTGGGTGCAGTGTCTCATGCCTGTAATCCCAGCACTTTC YDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK|tvhk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27769 KMT2A::ENSG00000285827 ENSG00000118058.25::ENSG00000285827.1 EOL1 SRR8616218 SRR8639143 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ ENSG00000285827 ENSG00000285827.1 protein_coding + + chr11:118401602-118482737:+ chr11:118468775:+ chr11:118272317-118353452:+ chr11:118339490:+ chr11:118483217,chr11:118483218,chr11:118483218 chr11:118460412,chr11:118460410,chr11:118460409 NA NA chr11:118353932,chr11:118353933,chr11:118353933 chr11:118331127,chr11:118331125,chr11:118331124 NA NA sense sense out-of-frame CDS/splice-site 5'UTR/splice-site duplication low none CXXC_zinc_finger_domain(100%)|CXXC_zinc_finger_domain(100%) ATP-synt_G(100%),AT_hook(100%),zf-CXXC(100%)|AT_hook(100%),zf-CXXC(100%) 14 21 0 301 125 ENST00000710560.1 ENST00000648261.1 downstream upstream duplicates(2),inconsistently_clipped(1),low_entropy(2),mismatches(3) CAAGAAAAGAAGTTCCCAAAACCACTCCTAGTGAGCCCAAGAAAAAGCAGCCTCCACCACCAGAATCAG___GTCCAGAGCAGAGCAAACAGAAAAAAGTGGCTCCCCGCCCAAGTATCCCTGTAAAACAAAAACCAAAAGAAAAG|GATGAGCAATTCTTAGGTTTTGGCTCAGATGAAGAAGTCAGAGTGCGAAGTCCCACAAGGTCTCCTTCAG___TTAAAACTAGTCCTCGAAAACCTCGTGGGAGACCTAGAAGTGGCTCTGACCGAAATTCAGCTATCCTCTCAGATCCATCTGTGTTTTCCCCTCTAAATAAATCAGAGACCAAATCTGGAGATAAGATCAAGAAGAA RKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEK|deqflgfgsdeevrvrsptrspsvktsprkprgrprsgsdrnsailsdpsvfsplnksetksgdkikk NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other FALSE NA NA NA NA NA NA NA NA NA 27801 NELFA::ZNF876P ENSG00000185049.16::ENSG00000198155.6 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NELFA ENSG00000185049.16 protein_coding - - chr4:1982717-2041903:- chr4:2008750:- chr4:1984444-2043630:- chr4:2010477:- ZNF876P ENSG00000198155.6 transcribed_unprocessed_pseudogene + - chr4:218650-254841:+ chr4:219324:- chr4:212439-248630:+ chr4:213113:- chr4:2008445,chr4:2008448,chr4:2008449 chr4:220938,chr4:220938,chr4:220938 NA NA chr4:2010172,chr4:2010175,chr4:2010176 chr4:214727,chr4:214727,chr4:214727 NA NA sense antisense out-of-frame CDS/splice-site exon deletion/5'-5' high none none none 114 23 110 1242 142 ENST00000542778.5 unknown upstream downstream duplicates(22),mismappers(2),mismatches(19) GGCGTCCATGCGGGAGAGCGACACGGGCCTGTGGCTGCACAACAAGCTGGGGGCCACGGACGAGCTGTGGGCGCCGCCCAGCATCGCGTCCCTGCTCACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGGCCTCTCGTCGGCAGTGAAGCTCAAGTTGCTACTCGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAG|GTGATCAGGTCTGAGTTAAAGAGAGCAACACCTGTTTTATTTAAAAAATAAGATAAAATAACGTGACTACTGCTGAAGATTCTCCAATTACCAACCTAGTACTATGCTAAGAAGAAAAGAGAAATTATGGAAGATTCTAAAAAATTAATCCAAAAATTGTTTCCTGATAGGCTCTTTAGAATATTTAAGTGTTTCAAATCTGT ASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE|virselkratpvlfkk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27804 RLF::ZMPSTE24 ENSG00000117000.9::ENSG00000084073.10 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 2576 TRUE 4686 TRUE 1777 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40271894:+ chr1:40723713-40759852:+ chr1:40737566:+ chr1:40188561,chr1:40188559 chr1:40270479,chr1:40270475 NA NA chr1:40654233,chr1:40654231 chr1:40736151,chr1:40736147 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through high none |CAAX_prenyl_protease_N-terminal__five_membrane_helices(8%),Peptidase_family_M48(100%) |Peptidase_M48(100%),Peptidase_M48_N(0%) 46 66 28 227 484 ENST00000372771.5 ENST00000372759.4 downstream upstream duplicates(10),mismappers(2),mismatches(22) GCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGGGAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAAG___GATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTA ADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|VLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27805 RLF::ZMPSTE24 ENSG00000117000.9::ENSG00000084073.10 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4686 TRUE 1777 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281343:+ chr1:40723713-40759852:+ chr1:40747015:+ chr1:40188561,chr1:40188559 chr1:40270479,chr1:40270475 NA NA chr1:40654233,chr1:40654231 chr1:40736151,chr1:40736147 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |Peptidase_family_M48(88%) |Peptidase_M48(54%) 3 0 10 227 387 ENST00000372771.5 ENST00000372759.4 downstream upstream none GGGAAGATGGCGGACGGAAAGGGAGACGCCGCCGCTGTCGCCGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGACAGAGCTGAGGGAGCAAGAGGTGTCGGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|GATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAA___AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATC MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQ|dlnalptamlifmassrtse* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27806 RLF::ZMPSTE24 ENSG00000117000.9::ENSG00000084073.10 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4686 TRUE 1777 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40285925:+ chr1:40723713-40759852:+ chr1:40751597:+ chr1:40188561,chr1:40188559 chr1:40270479,chr1:40270475 NA NA chr1:40654233,chr1:40654231 chr1:40736151,chr1:40736147 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none |Peptidase_family_M48(63%) |Peptidase_M48(32%) 0 1 3 227 584 ENST00000372771.5 ENST00000372759.4 downstream upstream none CGGGGCTGGGGCTGAGGCTCCGGCGGTAGCGGGAGCCGGAGATGGAGTCGAGACTGAGTCCATGGTTCGGGGTCATCGCCCCGTATCTCCAGCGCCGGGAGCCTCGGGACTGCGGCCGTGTCTGTGGCAGCTGGAGAtAGAG...GGAGGTCTCATCTTTGAACTACTGCCGGAGCTTCTGCCAG|AATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAG___ATGAATTCTTTCCTGTGTTTTTTTTTATTTGC...GAG___GTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATTTGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGC EVSSLNYCRSFCQ|NKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLF NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27807 ANKRD13D::ANO1 ENSG00000172932.16::ENSG00000131620.18 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD13D ENSG00000172932.16 protein_coding + + chr11:67289300-67302485:+ chr11:67292180:+ chr11:67056771-67069956:+ chr11:67059651:+ ANO1 ENSG00000131620.18 protein_coding + - chr11:69985907-70189530:+ chr11:69998553:- chr11:69832013-70035636:+ chr11:69844659:- chr11:67297075 chr11:70003770 NA NA chr11:67064546 chr11:69849876 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Ankyrin_repeats_(3_copies)(100%),GPCR-chaperone(28%)| Ank_2(100%),Ank_4(100%),GPCR_chapero_1(5%)| 33 19 41 326 75 ENST00000511455.7 unknown downstream downstream duplicates(1),mismatches(10) AGTCTCCTGGGCTTCGAGCACATGACCTGGCAGCGGGGCCGGAGGAGCTTCATCTTCAAGGGCCAGG___AGGCAGGAGCCCTGGTGATGGAAGTGGACCATGACCGGCAGGTGGTGCATGTGGAGACACTGGGGCTCACTCTGCAGGAGCCCGAAACACTGCTGGCCGCCATGCGGCCCAGCGAGGAGCATGTGGCCAGTCGCCTCACCTCTCCTATCGTCTCCACCCACCTGGACACTCGTAATGTGGCCTTTGAGAG|CTTTATTAATAATGGCTTCGAACTGGAAACAGCCCCAGGATCTTCCTAGAAGAATGGATACCCCATGAGGACGCCCACACAATGGGGCACTGGGGGACATACTACTCATGAACACCAAAACATTTCCCCTGAACCGAGGACGCTGGACACAGGAGAATCTGCACTCATGCTTTTATTTATAGGAAGAGCTAGAATAGGCAGAATTATGC SLLGFEHMTWQRGRRSFIFKGQEAGALVMEVDHDRQVVHVETLGLTLQEPETLLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFEs|finngfeletapgss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27808 ANKRD13D::ENSG00000255191 ENSG00000172932.16::ENSG00000255191.1 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD13D ENSG00000172932.16 protein_coding + + chr11:67289300-67302485:+ chr11:67292180:+ chr11:67056771-67069956:+ chr11:67059651:+ ENSG00000255191 ENSG00000255191.1 lncRNA + - chr11:69985876-70015815:+ chr11:69998553:- chr11:69831982-69861921:+ chr11:69844659:- chr11:67297075 chr11:70003770 NA NA chr11:67064546 chr11:69849876 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none Ankyrin_repeats_(3_copies)(100%),GPCR-chaperone(28%)| Ank_2(100%),Ank_4(100%),GPCR_chapero_1(5%)| 33 19 41 326 75 ENST00000511455.7 unknown downstream downstream duplicates(1),mismatches(10) AGTCTCCTGGGCTTCGAGCACATGACCTGGCAGCGGGGCCGGAGGAGCTTCATCTTCAAGGGCCAGG___AGGCAGGAGCCCTGGTGATGGAAGTGGACCATGACCGGCAGGTGGTGCATGTGGAGACACTGGGGCTCACTCTGCAGGAGCCCGAAACACTGCTGGCCGCCATGCGGCCCAGCGAGGAGCATGTGGCCAGTCGCCTCACCTCTCCTATCGTCTCCACCCACCTGGACACTCGTAATGTGGCCTTTGAGAG|CTTTATTAATAATGGCTTCGAACTGGAAACAGCCCCAGGATCTTCCTAGAAGAATGGATACCCCATGAGGACGCCCACACAATGGGGCACTGGGGGACATACTACTCATGAACACCAAAACATTTCCCCTGAACCGAGGACGCTGGACACAGGAGAATCTGCACTCATGCTTTTATTTATAGGAAGAGCTAGAATAGGCAGAATTATGC SLLGFEHMTWQRGRRSFIFKGQEAGALVMEVDHDRQVVHVETLGLTLQEPETLLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFEs|finngfeletapgss* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27812 YAP1::MAML2 ENSG00000137693.14::ENSG00000184384.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 2578 TRUE 4688 TRUE 1778 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102206074:+ chr11:101981178-102104155:+ chr11:102076805:+ MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96093517:- chr11:95709762-96076359:- chr11:95826681:- chr11:102220764,chr11:102220763 chr11:96109405,chr11:96109406 NA NA chr11:102091495,chr11:102091494 chr11:95842569,chr11:95842570 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none WW_domain(100%)| WW(100%)| 15 6 14 1891 40 ENST00000282441.10 ENST00000524717.6 downstream downstream duplicates(3),mismatches(1) CAGAATATGATGAACTCGGCTTCAG___...GAAATTTACTATATAAACCATAAGAACAAGACCACCTCTTGGCTAGACCCAAGGCTTGACCCTCGTTTTG___CCATGAACCAGAGAATCAGTCAGAGTGCTCCAGTGAAACAGCCACCACCCCTGGCTCCCCAGAGCCCACAGGGAGGCGTCATGGGTGGCAGCAACTCCAACCAGCAGCAACAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCTGCGGCTGAAACAGCAAGAACTGCTTCGGCAG|CTCCAGGGTTCCTTGAAAAGAAAACAGGTAGTTAACCTATCTCCTGCCAACAGCAAGCGACCCAATGGCTTTGTGGACAACTCATTTCTTGATATCAAAAGAATTCGTGTTGGGGAGAATCTCTCTGCAGGACAAGGTGGCCTCCAAATAAACAATGGACAAAGTCAGATTATGTCAGGGACCTTGCCTATGAGCCAAGCACCCCTGCGAAAGACTAACACTCTGCCA EIYYINHKNKTTSWLDPRLDPRFAMNQRISQSAPVKQPPPLAPQSPQGGVMGGSNSNQQQQMRLQQLQMEKERLRLKQQELLRQ|LQGSLKRKQVVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPLRKTNTL NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx,Skin,Soft_tissue,Brain,Salivary_gland,Thymus no_match TRUE Skin Cutaneous Melanoma SKIN no_match 102076805|102080295 TRUE|FALSE 95826681|95826681 TRUE|TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 27813 YAP1::MAML2 ENSG00000137693.14::ENSG00000184384.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 2579 TRUE 4688 TRUE 1778 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102209564:+ chr11:101981178-102104155:+ chr11:102080295:+ MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96093517:- chr11:95709762-96076359:- chr11:95826681:- chr11:102220764,chr11:102220763 chr11:96109405,chr11:96109406 NA NA chr11:102091495,chr11:102091494 chr11:95842569,chr11:95842570 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none WW_domain(100%)| WW(100%)| 4 4 18 826 40 ENST00000282441.10 ENST00000524717.6 downstream downstream duplicates(1),low_entropy(1),mismatches(1),multimappers(2) CTGCAGCAACTGCAGATGGAGAAGGAGAGGCTGCGGCTGAAACAGCAAGAACTGCTTCGGCAG___GCAATGCGGAATATCAATCCCAGCACAGCAAATTCTCCAAAATGTCAG|CTCCAGGGTTCCTTGAAAAGAAAACAGGTAGTTAACCTATCTCCTGCCAACAGCAAGCGACCCAATGGCTTTGTGGACAACTCATTTCTTGATATCAAAAGAATTCGTGTTGGGGAGAATCTCTCTGCAGGACAAGGTGGCCTCCAAATAAACAATGGACAAAGTCAGATTATGTCAGGGACCTTGCCTATGAGCCAAGCACCCCTGCGAAAGACTAACACTCTGCCATCCCATACACATTCTCCTGGCAATGGCC LQQLQMEKERLRLKQQELLRQAMRNINPSTANSPKCQ|LQGSLKRKQVVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPLRKTNTLPSHTHSPGNG NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx,Skin,Soft_tissue,Brain,Salivary_gland,Thymus no_match TRUE Skin Cutaneous Melanoma SKIN no_match 102076805|102080295 FALSE|TRUE 95826681|95826681 TRUE|TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 27814 YAP1::MAML2 ENSG00000137693.14::ENSG00000184384.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4688 TRUE 1778 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102206086:+ chr11:101981178-102104155:+ chr11:102076817:+ MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96093517:- chr11:95709762-96076359:- chr11:95826681:- chr11:102220764,chr11:102220763 chr11:96109405,chr11:96109406 NA NA chr11:102091495,chr11:102091494 chr11:95842569,chr11:95842570 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none WW_domain(100%)| WW(100%)| 2 0 18 1698 40 ENST00000537274.5 ENST00000524717.6 downstream downstream mismatches(1) CAGAATATGATGAACTCGGCTTCAG___...GAAATTTACTATATAAACCATAAGAACAAGACCACCTCTTGGCTAGACCCAAGGCTTGACCCTCGTTTTG___CCATGAACCAGAGAATCAGTCAGAGTGCTCCAGTGAAACAGCCACCACCCCTGGCTCCCCAGAGCCCACAGGGAGGCGTCATGGGTGGCAGCAACTCCAACCAGCAGCAACAGATGCGACTGCAGCAACTGCAGATGGAGAAGGAGAGGCTGCGGCTGAAACAGCAAGAACTGCTTCGGCAGGTGAGGCCACAG|CTCCAGGGTTCCTTGAAAAGAAAACAGGTAGTTAACCTATCTCCTGCCAACAGCAAGCGACCCAATGGCTTTGTGGACAACTCATTTCTTGATATCAAAAGAATTCGTGTTGGGGAGAATCTCTCTGCAGGACAAGGTGGCCTCCAAATAAACAATGGACAAAGTCAGATTATGTCAGGGACCTTGCCTATGAGCCAAGCACCCCTGCGAAAGACTAACACTCTGCCATCCCATACACATT EIYYINHKNKTTSWLDPRLDPRFAMNQRISQSAPVKQPPPLAPQSPQGGVMGGSNSNQQQQMRLQQLQMEKERLRLKQQELLRQVRPQ|LQGSLKRKQVVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPLRKTNTLPSHTH NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx,Skin,Soft_tissue,Brain,Salivary_gland,Thymus no_match TRUE Skin Cutaneous Melanoma SKIN no_match 102076805|102080295 FALSE|FALSE 95826681|95826681 TRUE|TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 27815 PPFIA1::CNTN5 ENSG00000131626.19::ENSG00000149972.12 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70272436:+ chr11:70116796-70231418:+ chr11:70118542:+ CNTN5 ENSG00000149972.12 protein_coding + - chr11:99020949-100358885:+ chr11:99335090:- chr11:98891679-100229616:+ chr11:99205821:- chr11:70288901,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452,chr11:70292452 chr11:100264691,chr11:99898948,chr11:99898957,chr11:99898962,chr11:99898967,chr11:99898968,chr11:99898970,chr11:99898961,chr11:99898974,chr11:99898975,chr11:99898980,chr11:99898985,chr11:99898990,chr11:99898953,chr11:99898996,chr11:99898998 NA NA chr11:70135007,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558,chr11:70138558 chr11:100135423,chr11:99769680,chr11:99769689,chr11:99769694,chr11:99769699,chr11:99769700,chr11:99769702,chr11:99769693,chr11:99769706,chr11:99769707,chr11:99769712,chr11:99769717,chr11:99769722,chr11:99769685,chr11:99769728,chr11:99769730 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/3'-3' high none none none 4 13 17 492 59 ENST00000253925.12 unknown downstream downstream low_entropy(1),mismappers(1),mismatches(3) TCCGGCTCCCCTTCACAGCCAGATGCAGATTCACATTTTGAACAGTTGATGGTCTCCATGCTAGAAGAAAGGGACCGCCTTCTTGATACACTGAGAGAGACTCAAGAAACGCTGGCCTTAACCCAGGGGAAGTTACACGAGGTTGGTCATGAAAGAGATTCCTTGCAGAGACAGCTCAACACGGCACTTCCACAG|GTTTTCCAATTTGGCCTAGAAGCAGTGGTTGAAACAGCTCTGGTGCCAGTGAATACGACTTCCAGAGGAAGTATTGCTGAGGAATACACTGAATGTCCATTATTGTTTCAAGCATGTCTATTTGGCTTTGCTGATAGTTAGGTTGAGGGCCAGAAAGTCAAATAACTCCTACTCAAATCAGGCAATACAGAAACAA SGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQ|vfqfgleavvetalvpvnttsrgsiaeeytecpllfqaclfgfads* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27820 ENSG00000254682::ACTE1P ENSG00000254682.2::ENSG00000172900.12 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000254682 ENSG00000254682.2 lncRNA + + chr11:71448562-71452157:+ chr11:71448885:+ chr11:71159608-71163203:+ chr11:71159931:+ ACTE1P ENSG00000172900.12 transcribed_unitary_pseudogene - + chr11:71382601-71423423:- chr11:71419188:+ chr11:71093647-71134469:- chr11:71130234:+ chr11:71450431,chr11:71450430,chr11:71450432 chr11:71414281,chr11:71414277,chr11:71414280 NA NA chr11:71161477,chr11:71161476,chr11:71161478 chr11:71125327,chr11:71125323,chr11:71125326 NA NA sense antisense unknown exon/splice-site intron duplication/5'-5' high none none none 9 8 7 1785 55 ENST00000529369.2 unknown downstream upstream duplicates(1),low_entropy(1),mismatches(6) CCAGCTGACCAGCTGGGGGTGGGGCGTGGCGGAGTGGCCACGTGGGCCGCGCGGAGAACGCGCCAGGCTCATCACCTGGAgCATCGTGCCTCAGTTTCCCCCTCGGCAAATGGGGCTTCAGCGGCTCGCGAC?CACATTGATGGAGCGTATGTCCAGGCGCCGGTGCACCGCAAGGAGCAAAACAGACACAGTTCTTGGTCCTAGGGCTCACGTCCCGGGGCGAAGAGGATCCTCCATAAACGATCAG|AGTCTGGCTGCGTTGCCCAGGCTGGAGTGCAGTGGAACCATCAAAGCTCGCCGTAGCCTTGACCTTCCAGGCTCAAGCAATCCTCCCACCTTAGTATCCTGAGTAGCTGGAACTACAAGCATGCACCACCACACCTGGCTAATATTTTGTATTTTTAGTAGAAACAGGATTTCGCCATGTTGCGCgAGCTGGTCTCAAACCTCAGCCTTAGCTTCCCACAGTGCTGGGATTACAGGCCTGAACCATCACACCTGGCCTTATTTTTTTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27823 CHKA::ENSG00000254587 ENSG00000110721.12::ENSG00000254587.2 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68068879:- chr11:67820326-67888911:- chr11:67836346:- ENSG00000254587 ENSG00000254587.2 lncRNA + - chr11:96590317-96985810:+ chr11:96881259:- chr11:96461317-96856810:+ chr11:96752259:- chr11:68066783,chr11:68066791 chr11:96971461,chr11:96971466 NA NA chr11:67834250,chr11:67834258 chr11:96842461,chr11:96842466 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none Choline/ethanolamine_kinase(72%)| APH(94%),Choline_kinase(90%),EcKL(39%)| 9 6 5 117 14 ENST00000265689.9 unknown upstream downstream duplicates(1) CCAGAATTAAAAAGCTCCACAAATTGCTCAGTTACAATCTGCCCTTGGAACTGGAAAACCTGAG___ATCATTGCTTGAATCTACTCCATCTCCAGTTGTATTTTGTCATAATGACTGTCAAGAAG|GCCACAAAATGTGTCTCATGAGGAAAGAAGGACCTAGGAAGCCATATGGGATATCCAAGACCTCTCTCTGCTGTGCCTACACCATTTGGTTGCTTGTATCCTTAACATCAG___GTGGGCACAGCCTAACAATGGAACACAGCAGCTGCAATGGAC...TGCTAGCCAAGGGCAGAAGGACTTTTAAATTATTG RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQE|ghkmclmrkegprkpygisktslccaytiwllvsltsgghsltmehsscng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27826 ZNF738::SMOC2 ENSG00000172687.14::ENSG00000112562.20 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE TRUE 2581 FALSE NA FALSE NA ZNF738 ENSG00000172687.14 protein_coding + + chr19:21358930-21388582:+ chr19:21359143:+ chr19:21541732-21571384:+ chr19:21541945:+ SMOC2 ENSG00000112562.20 protein_coding + + chr6:168441151-168673445:+ chr6:168509915:+ chr6:168841831-169073984:+ chr6:168910595:+ chr19:21360821 chr6:168467706 NA NA chr19:21543623 chr6:168868386 NA NA sense sense in-frame CDS/splice-site CDS/splice-site translocation high none |Kazal-type_serine_protease_inhibitor_domain(100%),Secreted_protein_acidic_and_rich_in_cysteine_Ca_binding_region(100%),Thyroglobulin_1_repeat_associated_disordered_domain(100%),Thyroglobulin_type-1_repeat(100%) |Kazal_2(100%),SPARC_Ca_bdg(100%),Thyroglob_assoc(100%),Thyroglobulin_1(100%) 7 4 5 52 15 ENST00000683779.1 ENST00000354536.9 downstream upstream none CTGCCGCTGGAACTCCGGGTCTCGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGGTCCTGTGACCTGCAGGTATTGGGAATCCACAGCTAAGACGCCGGGACACCCTGGAAGCCTAGAAATG|TTTTTGAGAGTGGATCAAGATAAAGACAAGGATTGTAGCTTGGACTGTGCGGGTTCGCCCCAGAAACCTCTCTGCGCATCTGACGGAAGGACCTTCCTTTCCCGTTGTGAATTTCAACGTGCCAAGTGCAAAGATCCCCAGCTAGAGATTGCATATCGAGGAAACTGCAAAG___ACGTGTCCAGGTGTGTGGCCGAAAGGAAGTATACCCAGGAGCAAGCCCG M|FLRVDQDKDKDCSLDCAGSPQKPLCASDGRTFLSRCEFQRAKCKDPQLEIAYRGNCKDVSRCVAERKYTQEQA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27827 SENP3-EIF4A1::SMG6 ENSG00000277957.1::ENSG00000070366.14 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA SENP3-EIF4A1 ENSG00000277957.1 protein_coding + + chr17:7563287-7578715:+ chr17:7565587:+ chr17:7466604-7482033:+ chr17:7468904:+ SMG6 ENSG00000070366.14 protein_coding - + chr17:2059839-2303785:- chr17:2065460:+ chr17:1963133-2207079:- chr17:1968754:+ NA NA NA NA NA NA NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none none Peptidase_C48(0%),SENP3_5_N(100%)| 2 6 4 765 336 ENST00000614237.1 unknown downstream upstream duplicates(1),mismatches(2) GGCCTGGTGTTGCAGCTGATCCAGTCTTACCAGCGGATGCCAGGCAATGCCATGGTGAGGGGCTTCCGAGTGGCTTATAAGCGGCACGTGCTGACCATGGATGACTTGGGGACCTTGTATGGACAGAACTGGCTCAATGACCAG|GGTCTCACCAGCTGGCCAGTGATGTCCTCACTGCGGAAGGCGATGGATTCGAGTTCATTGCCACGGCTGGTCAGGGCTCGCAGGCAAGAGTCCCGACTCTCGAATCGCTGCTCGAGGAACTCGATGGACTTGCGGGCCTTCTCTTGTACCACACGGGCGTAGaCCCCAGCCCGGTGGTCTGTCTCCTGCCCCTTGGCCAGGCCGTCCAGCTCATTGATCA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27828 CRMP1::CHKA ENSG00000072832.15::ENSG00000110721.12 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CRMP1 ENSG00000072832.15 protein_coding - + chr4:5748084-5893086:- chr4:5856267:+ chr4:5749811-5894813:- chr4:5857994:+ CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68070857:- chr11:67820326-67888911:- chr11:67838324:- chr4:5886660,chr4:5886657 chr11:68073506,chr11:68073509 NA NA chr4:5888387,chr4:5888384 chr11:67840973,chr11:67840976 NA NA antisense sense unknown CDS CDS/splice-site translocation/3'-3' high none |Choline/ethanolamine_kinase(69%) |APH(9%),Choline_kinase(16%),EcKL(100%) 1 6 0 3 172 unknown ENST00000265689.9 downstream downstream none CCGAACGCCATCGTACCAGCTTGTGATGTCCACGTGGAGGGAGTAATCACAGCAGGATTTGGTGTCAGCTGCTTCGTGCCACTTCTCGAAAGAG|AGCCGGCGATTAGATACTGAAGAATTAAGTTTGCCAGATATTTCTGCAGAAATCGCCGAGAAAATGGCTACATTTCATGGTATGAAAATGCCATTCAATAAGGAACCAAAATGGCTTTTTGGCACAATGGAAAA___GTATCTAAAGGAAGTGCTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27829 THOC2::SH2D1A ENSG00000125676.20::ENSG00000183918.18 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA THOC2 ENSG00000125676.20 protein_coding - - chrX:123600561-123733056:- chrX:123625912:- chrX:122734412-122866906:- chrX:122759763:- SH2D1A ENSG00000183918.18 protein_coding + - chrX:124227868-124373197:+ chrX:124228162:- chrX:123361718-123507047:+ chrX:123362012:- NA NA NA NA NA NA NA NA sense antisense out-of-frame CDS/splice-site exon duplication/5'-5' high none THO_complex_subunit_2_N-terminus(100%),Transcription-_and_export-related_complex_subunit(100%),Transcription_factor/nuclear_export_subunit_protein_2(48%)| THOC2_N(100%),Tho2(42%),Thoc2(100%)| 1 1 4 114 5 ENST00000245838.13 unknown upstream downstream mismatches(2) AAAAGAAACAGATGGAACATGTACAGAGAGTTCTACAGAGATTGAAACTGGAAAAGGACAACTGGCTTTTAGCAA___AATCTACCAAAAATGAGACCATCACAAAATTTCTACAGCTGTGTATATTTCCTCGATGTATTTTTTCAGCAATTGATGCTGTTTACTGTGCTCGTTTTGTTGAATTGGTACATCAACAGAAAACTCCAAATTTTTCCACACTTCTTTGCTATGATCGA|GCACACCATGGTCCTGAAAGGATGGTTTCATCTCCATGAACATCATCAATCAGCAAGGCATGCTGGACATCTATATCAGGAAGTTAGAAGACAGCACACTGCAGAACATTCCTTGATTCCTGTGTCCACACTCCCTGTTCTGGACCTTGGTCAGTGGGGAAAAAAAAAATTATGGAGGGGCTTCCTGACTCCAG KKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDR|ahhgpermvssp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27830 RABGAP1L::MACROD2 ENSG00000152061.24::ENSG00000172264.19 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4692 TRUE 1779 RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174305127:+ chr1:174128548-174964445:+ chr1:174274265:+ MACROD2 ENSG00000172264.19 protein_coding + + chr20:13995369-16053197:+ chr20:14888143:+ chr20:13976015-16033842:+ chr20:14868789:+ chr1:174363677,chr1:174363676 chr20:14834300,chr20:14834296 NA NA chr1:174332815,chr1:174332814 chr20:14814946,chr20:14814942 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Kinesin_protein_(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%)|Macro_domain(53%) DUF3694(100%),PID(100%)|Macro(15%) 1 1 3 140 2 ENST00000681986.1 ENST00000463861.5 downstream upstream none CTTTCACAGAGACTTTCTTCATGAGATTGAAACAG___TCTGAGGGAAAAGGCCATACCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGG|ACACGCTGTTATCAGTCCTGGAGCCTGAGTACACTGTGATGGCTTCATGTTGTCAGCTGCGTTTTCTCATGCCCTACACTGCAGACTGAAAAAGGATGCTCCACAGCCAGCTTTAACACCATGCACCAAGCCTGCCACAGCCATCCTCTCTTCTGCTCCAAGCTGCTGAGAGACAGG FTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESDKEEPVTPTSGGGPMSPQDDEAEE|dtllsvlepeytvmasccqlrflmpytad* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27831 RABGAP1L::MACROD2 ENSG00000152061.24::ENSG00000172264.19 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4692 TRUE 1779 RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174305127:+ chr1:174128548-174964445:+ chr1:174274265:+ MACROD2 ENSG00000172264.19 protein_coding + + chr20:13995369-16053197:+ chr20:14849904:+ chr20:13976015-16033842:+ chr20:14830550:+ chr1:174363677,chr1:174363676 chr20:14834300,chr20:14834296 NA NA chr1:174332815,chr1:174332814 chr20:14814946,chr20:14814942 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation high none Kinesin_protein_(100%),Phosphotyrosine_interaction_domain_(PTB/PID)(100%)|Macro_domain(53%) DUF3694(100%),PID(100%)|Macro(18%) 0 1 3 140 1 ENST00000681986.1 ENST00000497992.1 downstream upstream mismatches(1) GCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGG|CAAATTTGGATGCAAGAAAGC...TAATGAAATCTCAATACTTGTGGCCAAAATAACGTAGGATGGAGAGCCATAGTTTAAAAGTTTGAAAGCTTTGGGGGTCATCTAGGACACTGAAATTCTGC AIYEVVSLQRESDKEEPVTPTSGGGPMSPQDDEAEE|anldark NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27832 SRPX2::LINC03077 ENSG00000102359.9::ENSG00000281566.4 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4693 TRUE 1780 SRPX2 ENSG00000102359.9 protein_coding + + chrX:100644195-100675788:+ chrX:100665657:+ chrX:99899192-99930785:+ chrX:99920654:+ LINC03077 ENSG00000281566.4 lncRNA + + chrX:98450688-98892061:+ chrX:98731531:+ chrX:97705686-98147059:+ chrX:97986529:+ chrX:100666656 chrX:98685593 NA NA chrX:99921653 chrX:97940591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none HYR_domain(100%),Sushi_repeat_(SCR_repeat)(61%)| HYR(100%),Sushi(65%)| 0 3 1 137 17 ENST00000373004.5 ENST00000649508.1 downstream upstream none ATACTGGGACCCACCGTTGGTGAAAGATTCTGCTGATGGTACCATCACCAG___GGTGACACTTCGGGGCCCTGAGCCTGGCTCT????????????????A...CTACAACCGGGCCAGCTGCAAGTTCATTGTGAAAGTACAAG|GATTATGAAGTACACATTAACAATGAAGCCTCTTTTCAAGTAAAGAAGTGAGTA___AtGGAGTTTCGCTCTTGTTGCCCAGGAGGAGTTCAATGGCGCAATCTCGGCTCACTGCAGC YNRASCKFIVKVQ|gl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27833 SRPX2::LINC03077 ENSG00000102359.9::ENSG00000281566.4 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4693 TRUE 1780 SRPX2 ENSG00000102359.9 protein_coding + + chrX:100644195-100675788:+ chrX:100665369:+ chrX:99899192-99930785:+ chrX:99920366:+ LINC03077 ENSG00000281566.4 lncRNA + + chrX:98450688-98892061:+ chrX:98731531:+ chrX:97705686-98147059:+ chrX:97986529:+ chrX:100666656 chrX:98685593 NA NA chrX:99921653 chrX:97940591 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication low none HYR_domain(52%),Sushi_repeat_(SCR_repeat)(61%)| HYR(59%),Sushi(65%)| 0 1 0 188 17 ENST00000373004.5 ENST00000649508.1 downstream upstream mismatches(1) CTCGAGTATACTGGGACCCACCGTTGGTGAAAGATTCTGCTGATGGTACCATCACCAG|GATTATGAAGTACACATTAACAATGAAGCCTCTTTTCAAGTAAAGAAGTGAGTA___AtGGAGTTTCGCTCTTGTTGCCCAGGAGGAGTTCAATGGCGCAATCTCGGCaCcCgGCAGCCTCTGCCTCCTGGATTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCC RVYWDPPLVKDSADGTITr|imkytltmkplfk* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27835 ARHGAP42::ANKRD13D ENSG00000165895.19::ENSG00000172932.16 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4694 TRUE 1781 ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ ANKRD13D ENSG00000172932.16 protein_coding + + chr11:67289300-67302485:+ chr11:67299530:+ chr11:67056771-67069956:+ chr11:67067001:+ chr11:100721904,chr11:100721905 chr11:67297265,chr11:67297263 NA NA chr11:100592635,chr11:100592636 chr11:67064736,chr11:67064734 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BAR_domain_of_APPL_family(19%)|GPCR-chaperone(64%) BAR_3(0%)|GPCR_chapero_1(20%),UIM(100%) 2 1 1 57 173 ENST00000298815.13 ENST00000511455.7 downstream upstream mismatches(1) GTtCCATGGGGCTGCCCACTCTGGAGTTCAGCGATTCCcACTTGcACAtCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|GTGTACAGTGCCACCAACGTGGAGCTGGTGACACGCACACGCACGGAGCACCTCTCTGATCAGGACAAGTCGAGGAGCAAAG___CGGGGAAGACTCCATTCCAGTCCTTCCTGGGGATGGCGCAGCAGCATTCCTC MGLPTLEFSDShLhiPDFRERLQCHEIELERTNKFIKELIKDGSLLIGALR|svqchqrgagdththgapl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27836 ARHGAP42::ANKRD13D ENSG00000165895.19::ENSG00000172932.16 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4694 TRUE 1781 ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ ANKRD13D ENSG00000172932.16 protein_coding + + chr11:67289300-67302485:+ chr11:67299058:+ chr11:67056771-67069956:+ chr11:67066529:+ chr11:100721904,chr11:100721905 chr11:67297265,chr11:67297263 NA NA chr11:100592635,chr11:100592636 chr11:67064736,chr11:67064734 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication high none BAR_domain_of_APPL_family(19%)|GPCR-chaperone(71%) BAR_3(0%)|GPCR_chapero_1(25%),UIM(100%) 2 0 1 57 104 ENST00000298815.13 ENST00000511455.7 downstream upstream duplicates(1) CTGACCTCCGGCCCGGACGTGTCCGCGGCCGCCGCTGGCAGCGCCTGTGCCATGGtGCTGCCCACTCTGGAGTTCAGCGAgTCCTACTTGGgCAGCCCAGATTTCAGGGAGCGCTTGCAGTGTCACGAGATTGAGCTGGAGCGAACCAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|GAACAAATGTGGTATCTGGGGCTGGCGGTCTGAGAAGATGGAAACTGTTAGCGGCTACGAGGC MvLPTLEFSeSYLgSPDFRERLQCHEIELERTNKFIKELIKDGSLLIGALR|rtnvvsgagglrrwkllaatr NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27837 ARHGAP42::ANKRD13D ENSG00000165895.19::ENSG00000172932.16 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4694 TRUE 1781 ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ ANKRD13D ENSG00000172932.16 protein_coding + + chr11:67289300-67302485:+ chr11:67299827:+ chr11:67056771-67069956:+ chr11:67067298:+ chr11:100721904,chr11:100721905 chr11:67297265,chr11:67297263 NA NA chr11:100592635,chr11:100592636 chr11:67064736,chr11:67064734 NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication low none BAR_domain_of_APPL_family(19%)|GPCR-chaperone(55%) BAR_3(0%)|GPCR_chapero_1(17%),UIM(100%) 0 1 0 57 193 ENST00000298815.13 ENST00000511455.7 downstream upstream none CAACAAGTTCATCAAGGAGCTCATTAAGGACGGCTCTCTGCTCATTGGGGCGTTGAGGA|CGGGGAAGACTCCATTCCAGTCCTTCCTGGGGcTGGtGCcGC...TCCCACACCGGG___GCCCCCGTGCAGCAGGCAGCCAGCCCCACCAACCCCACAGCCATCTCCCCTGAGGAGTACTTCGACCCCAACTTCAGCCTGGAGTCACG NKFIKELIKDGSLLIGALR|tGKTPFQSFLGlvp NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27841 NADSYN1::SLC2A13 ENSG00000172890.13::ENSG00000151229.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4695 TRUE 1782 NADSYN1 ENSG00000172890.13 protein_coding + + chr11:71453109-71524107:+ chr11:71475622:+ chr11:71164155-71235153:+ chr11:71186668:+ SLC2A13 ENSG00000151229.13 protein_coding - - chr12:39755025-40106089:- chr12:40048210:- chr12:40148827-40499891:- chr12:40442012:- chr11:71476072,chr11:71476065 chr12:40050805,chr12:40050806 NA NA chr11:71187118,chr11:71187111 chr12:40444607,chr12:40444608 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site translocation high none Carbon-nitrogen_hydrolase(94%)|Sugar_(and_other)_transporter(76%) CN_hydrolase(88%)|MFS_1(76%),Sugar_tr(76%) 2 0 1 54 27 ENST00000528509.5 ENST00000280871.9 downstream downstream inconsistently_clipped(1) GGATCTCTGAGCACACAGCGGCCAGCTGCGTGAGGGAGGGCCCTGGGGGAGCTGTGAGTTACAGGTCGGAAGCGCCATTGCTATCCCGAAGCGACACAGATATGTGGaTGCTCCGAGGAAGGAGATGACAGAGAACAAAGCTAAGAACCCTGCTTGGCACATTCCTCACCAGCAACTGAGCTGCCGCTTGGAA...CCAGATTCCTTTGGGAAGCTGATGAAAGCTCTGCACATTCTGCGGCTAAAGATGCGCATTAGCACAGGGCAAGGCTTCCCAG|GCATTGCTTCTATGACAGTGCCAGTGTACATTGCGGAGGTCTCACCACCCAATTTAAGAGGCCGATTAGTCACCATTAATACCCTCTTCATCACAGGAGGGCAGTTCTTTGCAAGTGTTGTTGATGGA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6754 chr11:71473503-71473568:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27842 NADSYN1::SLC2A13 ENSG00000172890.13::ENSG00000151229.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4695 TRUE 1782 NADSYN1 ENSG00000172890.13 protein_coding + + chr11:71453109-71524107:+ chr11:71474526:+ chr11:71164155-71235153:+ chr11:71185572:+ SLC2A13 ENSG00000151229.13 protein_coding - - chr12:39755025-40106089:- chr12:40048210:- chr12:40148827-40499891:- chr12:40442012:- chr11:71476072,chr11:71476065 chr12:40050805,chr12:40050806 NA NA chr11:71187118,chr11:71187111 chr12:40444607,chr12:40444608 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site translocation low none Carbon-nitrogen_hydrolase(94%)|Sugar_(and_other)_transporter(76%) CN_hydrolase(84%)|MFS_1(76%),Sugar_tr(76%) 0 2 0 732 27 ENST00000319023.7 ENST00000280871.9 downstream downstream none GGAAGCGTCTTTGCTCAAGGATCCCAGTTTTCTCTGGATGACGTG|GCATTGCTTCTATGACAGTGCCAGTGTACATTGCGGAGGTCTCACCACCCAATTTAAGAGGCCGATTAGTCACCATTAATACCCTCTTCATtACAGGAGGGCAGTTCTTT...GGAATATGATAGCATCAAAAACAACATTGAAGAGGAGGAAAAAGAGGTTGGCTCAG___CTGGACCTGTGATCTGCAGAATGCTGAGTTATCCCCCAACTCGCC GSVFAQGSQFSLDDV|alll* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-6754 chr11:71473503-71473568:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27843 KATNIP::XPO6 ENSG00000047578.14::ENSG00000169180.12 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27631162:+ chr16:27561454-27791665:+ chr16:27642483:+ XPO6 ENSG00000169180.12 protein_coding - - chr16:28097976-28211965:- chr16:28146203:- chr16:28109297-28223286:- chr16:28157524:- chr16:27637332 chr16:28151324 NA NA chr16:27648653 chr16:28162645 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 1 2 0 53 285 ENST00000261588.10 ENST00000304658.10 downstream downstream none TGAGGCTGGcGCACTTGGAGCAAGGTTTCTCTGTCTATGTCAACGGTGCCAATTCGGAGCTGAAATCATCACCGCGGAAAGCTATTCACTCTGACTTCTCC...AAGCCTTAAaACGCAGTTCcCGGACAGCCCCCAGTAAAGTCCAGCGCCGAGGATGGCACCAG|CCTACTCATGAAGGTTACTTCTCTTGTTTGGATATCTGGACGCTGTTTTTGGACTATCTGACAAGTAAAATTAAAAGTCGTCTTGGAGACAAGGAAGCAGTTCTCAACAG___GTACGAAGATGCCC ALkRSSRTAPSKVQRRGWHQ|PTHEGYFSCLDIWTLFLDYLTSKIKSRLGDKEAVLNRYEDA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27844 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000215559.9 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000215559.9 transcribed_unprocessed_pseudogene - - chr21:13909574-13979911:- chr21:13970110:- chr21:15281895-15352232:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 2 25 5 ENST00000428809.5 ENST00000451663.5 downstream downstream none GCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCACCGGGTATTGTCAACATCCTTCTTAAGCAAAATATTAATcTCTTTACTCAAGACATGTATGGACAAGATGCAGAAGATTACGCTATTTCTTGCCGTTTGACAAA___AATTCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27845 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000291280.1 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4696 TRUE 1783 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000291280.1 lncRNA - - chr21:13937946-13980437:- chr21:13970110:- chr21:15310267-15352758:- chr21:15342431:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon/splice-site inversion high none none none 1 0 2 25 5 ENST00000428809.5 ENST00000429521.5 downstream downstream none GCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|AACAGCCCTCATGCTTGCTGTGCACTATGACTCACCGGGTATTGTCAACATCCTTCTTAAGCAAAATATTAATcTCTTTACTCAAGACATGTATGGACAAGATGCAGAAGATTACGCTATTTCTTGCCGTTTGACAAA___AATTCAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27846 ENSG00000224905::ANKRD20A11P ENSG00000224905.8::ENSG00000291280.1 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4696 TRUE 1783 ENSG00000224905 ENSG00000224905.8 lncRNA + + chr21:14027415-14144468:+ chr21:14027597:+ chr21:15399736-15516789:+ chr21:15399918:+ ANKRD20A11P ENSG00000291280.1 lncRNA - - chr21:13937946-13980437:- chr21:13972057:- chr21:15310267-15352758:- chr21:15344378:- NA NA NA NA NA NA NA NA sense sense unknown exon/splice-site exon inversion high none none none 0 1 2 25 3 ENST00000428809.5 ENST00000429521.5 downstream downstream none GCTTCATTGCCTTGTGTCCTCTGCTCCGGGAGACTTCGGTGATTCTGCCACTCCCTCCGTCGCTCTGTGACCTGCTGGCATTGAATGATTTATAGCTAAGACTCCAGGACACCCCTGAAGCCGAGAAATG|TGACCCATTTGGAgCAGGAGTGCCTGACATTCGCATCTGGGATCCTGACcCCATTGATAGAA___AACAGCCCTCATGCTTGCTGTGCACTATGACTCACCGGGTATTGTC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27847 ARRB1::TRPC6 ENSG00000137486.17::ENSG00000137672.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ARRB1 ENSG00000137486.17 protein_coding - - chr11:75260122-75351705:- chr11:75272895:- chr11:74971166-75062749:- chr11:74983939:- TRPC6 ENSG00000137672.13 protein_coding - + chr11:101451564-101872562:- chr11:101509286:+ chr11:101322295-101743293:- chr11:101380017:+ chr11:75270751,chr11:75270819,chr11:75270475,chr11:75270753 chr11:101492300,chr11:101491836,chr11:101492378,chr11:101492298 NA NA chr11:74981795,chr11:74981863,chr11:74981519,chr11:74981797 chr11:101363031,chr11:101362567,chr11:101363109,chr11:101363029 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' high none Arrestin_(or_S-antigen)__C-terminal_domain(86%),Arrestin_(or_S-antigen)__N-terminal_domain(100%)| Arrestin_C(59%),Arrestin_N(100%)| 0 1 1 26 2 ENST00000420843.7 unknown upstream upstream none CCTTCCTAGCCAATAACCGAGAGAAGCGGGGCCTCGCCTTGGACGGGAAGCTCAAGCACGAAGACACGAACTTGGCCTCTAGCACCCT___GTTGAGGGAAGGT...ATTGTTTCCTACAAAGTGAAAGTGAAGCTGGTGGTGTCTCGGGGCGG|ATGGGGTCTCGCCATATTGCCCAGGCTGGTATCAAACTCGTGGGCTCAAGTATCCTCCCACCTCAGCCTCCCAACATACTGGGATTACAG___AAATCTGTGCAGATGCAGGACCATCA IVSYKVKVKLVVSRGg|wglailprlvsnswaqvsshlslptywdyrnlcrcrti NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE TRUE hsa-mir-326 chr11:75335092-75335186:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27849 NELFA::ZNF876P ENSG00000185049.16::ENSG00000290382.1 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NELFA ENSG00000185049.16 protein_coding - - chr4:1982717-2041903:- chr4:2008750:- chr4:1984444-2043630:- chr4:2010477:- ZNF876P ENSG00000290382.1 lncRNA + - chr4:212610-255985:+ chr4:219723:- chr4:206399-249774:+ chr4:213512:- chr4:2008445,chr4:2008448,chr4:2008449 chr4:220938,chr4:220938,chr4:220938 NA NA chr4:2010172,chr4:2010175,chr4:2010176 chr4:214727,chr4:214727,chr4:214727 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' medium none none none 0 1 71 1242 10 ENST00000542778.5 unknown upstream downstream duplicates(5),mismappers(3),mismatches(6) GGCGTCCATGCGGGAGAGCGACACGGGCCTGTGGCTGCACAACAAGCTGGGGGCCACGGACGAGCTGTGGGCGCCGCCCAGCATCGCGTCCCTGCTCACGGCCGCGGTCATCGACAACATCCGTCTCTGCTTCCATGGCCTCTCGTCGGCAGTGAAGCTCAAGTTGCTACTCGGGACGCTGCACCTCCCGCGCCGCACGGTGGACGAG|ATGCCTGTAgTCCCAGTCACCCgGGAGGCTGAGGCAGGAGAATTGCTGGAACCTGGGAGGCACAGGCTGCAGTGAGCTGAGATCACACCACTGTACTCCAGTCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAGAAAAAAGAGAATTTTTAGAAGATTTAACAGCATGGGGCTGAAGATGCCCCTATTTGTGAACATGAGAAAAAATGCAGCCTTTTCAGAAATTATTTGCATTGAAG ASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHGLSSAVKLKLLLGTLHLPRRTVDE|mpvvpvtreaeagellepgrhrlq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27850 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE TRUE 2582 TRUE 4697 TRUE 1784 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59679519:+ chr17:57697045-57774317:+ chr17:57756880:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through medium none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(41%)| Clathrin(75%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 17 34 18 1675 1183 ENST00000269122.8 ENST00000710770.1 downstream upstream duplicates(3),inconsistently_clipped(2),mismappers(2),mismatches(5) TGTTGGAAAGTATTGTGAGAAGAGAGATCCACATCTGGCCTGTGTTGCTTATGAACGTGGCCAATGTGATCTGGAACTTATTAAT___GTTTGCAATGAGAATTCCCTCTTCAAAAGTCTTTCTCGCTACCTGGTACGTCGAAAGGATCCAGAATTGTGGGGCAGCGTGCTGCTGGAAAGCAATCCTTACAGGAGACCCCTAATTGACCAG|TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAG___GGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTAT VGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQ|CCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27851 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE FALSE FALSE NA TRUE 4697 TRUE 1784 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59679519:+ chr17:57697045-57774317:+ chr17:57756880:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59834012:+ chr17:57784553-57919616:+ chr17:57911373:+ NA NA NA NA NA NA NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through low none Clathrin-H-link(100%),Clathrin__heavy-chain_linker(100%),Clathrin_propeller_repeat(100%),Region_in_Clathrin_and_VPS(41%)| Clathrin(75%),Clathrin-link(100%),Clathrin_H_link(100%),Clathrin_propel(100%)| 0 1 24 1675 15 ENST00000269122.8 ENST00000591877.2 downstream upstream mismatches(3) TATTGTGAGAAGAGAGATCCACATCTGGCCTGTGTTGCTTATGAACGTGGCCAATGTGATCTGGAACTTATTAAT___GTTTGCAATGAGAATTCCCTCTTCAAAAGTCTTTCTCGCTACCTGGTACGTCGAAAGGATCCAGAATTGTGGGGCAGCGTGCTGCTGGAAAGCAATCCTTACAGGAGACCCCTAATTGACCAG|GCTGGAGGACAATGGCGCACTGCAACCTCCACCTCCCAG___TGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCA...GTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGC YCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQ|aggqwrtatstsqccprhrsisaeaisgvpggstaeaspqkrng NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27862 TNFSF12::DNAH2 ENSG00000239697.12::ENSG00000183914.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4699 TRUE 1785 TNFSF12 ENSG00000239697.12 protein_coding + + chr17:7548508-7557890:+ chr17:7550978:+ chr17:7451825-7461207:+ chr17:7454295:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7740810:+ chr17:7621062-7737060:+ chr17:7644128:+ chr17:7556297 chr17:7739976 NA NA chr17:7459614 chr17:7643294 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(39%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) |AAA(100%),AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(72%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 4 2 2 206 9 ENST00000700015.1 ENST00000572933.6 downstream upstream mismappers(1),mismatches(1) CCAGGATCCTGCGCCTTTCCTGAACCGACTAGTTCGGCCTCGaAGAAGTG___CACCTAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCCATTATGAAG___TTCATCCACGACCTGGACAGGACGGAGCGCAGGCAG|GCTATCAAGCGGACTTATGACAAGAAGGCGGTGGATCTCTACATGCTGTTCAATAGCGAGCTGGCCCTGGTGAACCGTGAACGGAACAAGAAATGGCCAGACCTGGAGCCCTACGTGGCCCAGTATTCCGGAAAGGCGCGCTGGGTGCACATCCTCCGGCGTCGCATCGACAGAGTCAT QDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQDGAQA|gyqadl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27863 TNFSF12::DNAH2 ENSG00000239697.12::ENSG00000183914.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4699 TRUE 1785 TNFSF12 ENSG00000239697.12 protein_coding + + chr17:7548508-7557890:+ chr17:7550978:+ chr17:7451825-7461207:+ chr17:7454295:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7740420:+ chr17:7621062-7737060:+ chr17:7643738:+ chr17:7556297 chr17:7739976 NA NA chr17:7459614 chr17:7643294 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(46%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) |AAA(100%),AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(75%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 2 0 2 206 3 ENST00000700015.1 ENST00000572933.6 downstream upstream none GTGGCAGAGGAGGACCAGGACCCGTCG___GAACTGAATCCCCAGACAGAAGAAAGCCAGGATCCTGCGCCTTTCCTGAACCGACTAGTTCGGCCTCGaAGAAGTG___CACCTAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCCATTATGAAG___TTCATCCACGACCTGGACAGGACGGAGCGCAGGCAG|GTTCCGTGCCGGAATCAAGGACCTGGAGGTGATGACCCAGAA VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQDGAQA|gsvpesrtwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27864 TNFSF12::DNAH2 ENSG00000239697.12::ENSG00000183914.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4699 TRUE 1785 TNFSF12 ENSG00000239697.12 protein_coding + + chr17:7548508-7557890:+ chr17:7553825:+ chr17:7451825-7461207:+ chr17:7457142:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7740420:+ chr17:7621062-7737060:+ chr17:7643738:+ chr17:7556297 chr17:7739976 NA NA chr17:7459614 chr17:7643294 NA NA sense sense unknown 3'UTR/splice-site CDS/splice-site deletion/read-through medium none |AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(46%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) |AAA(100%),AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(75%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 1 0 2 24 3 ENST00000700050.1 ENST00000572933.6 downstream upstream none GAAGTTTCCAGAAAGAAGAGAGGACACATCTCCCACCATTACCAGAGGGTCAAAGGAGAACAAGAGACCAG|GTTCCGTGCCGGAATCAAGGACCTGGAGGTGATGACCCAGAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27865 TNFSF12-TNFSF13::DNAH2 ENSG00000248871.1::ENSG00000183914.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4700 TRUE 1786 TNFSF12-TNFSF13 ENSG00000248871.1 protein_coding + + chr17:7549099-7561601:+ chr17:7550978:+ chr17:7452416-7464918:+ chr17:7454295:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7740810:+ chr17:7621062-7737060:+ chr17:7644128:+ chr17:7556297 chr17:7739976 NA NA chr17:7459614 chr17:7643294 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(39%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) |AAA(100%),AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(72%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 4 2 2 206 9 ENST00000293826.4 ENST00000572933.6 downstream upstream mismappers(1),mismatches(1) CCAGGATCCTGCGCCTTTCCTGAACCGACTAGTTCGGCCTCGaAGAAGTG___CACCTAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCCATTATGAAG___TTCATCCACGACCTGGACAGGACGGAGCGCAGGCAG|GCTATCAAGCGGACTTATGACAAGAAGGCGGTGGATCTCTACATGCTGTTCAATAGCGAGCTGGCCCTGGTGAACCGTGAACGGAACAAGAAATGGCCAGACCTGGAGCCCTACGTGGCCCAGTATTCCGGAAAGGCGCGCTGGGTGCACATCCTCCGGCGTCGCATCGACAGAGTCAT QDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQDGAQA|gyqadl* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27866 TNFSF12-TNFSF13::DNAH2 ENSG00000248871.1::ENSG00000183914.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA TRUE 4700 TRUE 1786 TNFSF12-TNFSF13 ENSG00000248871.1 protein_coding + + chr17:7549099-7561601:+ chr17:7550978:+ chr17:7452416-7464918:+ chr17:7454295:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7740420:+ chr17:7621062-7737060:+ chr17:7643738:+ chr17:7556297 chr17:7739976 NA NA chr17:7459614 chr17:7643294 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site deletion/read-through medium none |AAA+_lid_domain(100%),ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(100%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain__N-terminal_region_1(46%),Dynein_heavy_chain__N-terminal_region_2(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%) |AAA(100%),AAA_5(100%),AAA_6(100%),AAA_7(100%),AAA_8(100%),AAA_9(100%),AAA_lid_1(100%),AAA_lid_11(100%),DHC_N1(75%),DHC_N2(100%),Dynein_AAA_lid(100%),Dynein_C(100%),Dynein_heavy(100%),MT(100%) 2 0 2 206 3 ENST00000293826.4 ENST00000572933.6 downstream upstream none GTGGCAGAGGAGGACCAGGACCCGTCG___GAACTGAATCCCCAGACAGAAGAAAGCCAGGATCCTGCGCCTTTCCTGAACCGACTAGTTCGGCCTCGaAGAAGTG___CACCTAAAGGCCGGAAAACACGGGCTCGAAGAGCGATCGCAGCCCATTATGAAG___TTCATCCACGACCTGGACAGGACGGAGCGCAGGCAG|GTTCCGTGCCGGAATCAAGGACCTGGAGGTGATGACCCAGAA VAEEDQDPSELNPQTEESQDPAPFLNRLVRPRRSAPKGRKTRARRAIAAHYEVHPRPGQDGAQA|gsvpesrtwr* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27877 ENOSF1::MAGI2 ENSG00000132199.20::ENSG00000187391.23 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENOSF1 ENSG00000132199.20 protein_coding - - chr18:670318-712662:- chr18:683246:- chr18:670318-712662:- chr18:683246:- MAGI2 ENSG00000187391.23 protein_coding - - chr7:78017055-79453667:- chr7:79171332:- chr7:77646372-79082983:- chr7:78800648:- chr18:680144,chr18:680147 chr7:79171678,chr7:79171682 NA NA chr18:680144,chr18:680147 chr7:78800994,chr7:78800998 NA NA sense sense out-of-frame CDS/splice-site intron translocation medium none Enolase_C-terminal_domain-like(40%),Mandelate_racemase_/_muconate_lactonizing_enzyme__N-terminal_domain(100%)|Guanylate_kinase(100%),PDZ_domain(83%),Unstructured_region_on_MAGI_(100%),WW_domain(100%) MR_MLE_C(45%),MR_MLE_N(100%)|Guanylate_kin(100%),MAGI_u1(100%),PDZ(99%),PDZ_6(100%),WW(100%) 1 3 1 755 6 ENST00000383578.7 unknown upstream downstream mismatches(1) CCAG___GTTTAAAGTAAAGGTGGGTGCTGATCTCCAGGATGACATGCGAAGATGCCAAATCATCCGAGACATGATTGGACCGGAAAAGACTTTG___ATGATGGATGCCA...GCTGGGATGTGCCTGAGGCGGTGGAGTGGATGTCCAAGCTGGCCAAGTTCAAGCCATTGTGGATTGAGGAGCCAACCTCCCCTGATGACATTCTGGGGCACGCCACCATTTCCAAG|GGAAGATTTGGACACAAAGGCACACTCAGGGGGAGAATACCCTGTGAAGACTGAAGTTATGTTGCTGTAAGCCAAAGAAACGCCAGAAGCTAAGAGAAGGTCTTGGAACAAATCCTTCCCTACTGCCTTCAGAAGAGGATAATCCTGCTGATACCTTGATTTCAGgCTTCTGACTTCTAGAACCATGGGAA WDVPEAVEWMSKLAKFKPLWIEEPTSPDDILGHATISK|grfghkgtlrgripced* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27878 ENOSF1::ENSG00000281120 ENSG00000132199.20::ENSG00000281120.1 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ENOSF1 ENSG00000132199.20 protein_coding - - chr18:670318-712662:- chr18:683246:- chr18:670318-712662:- chr18:683246:- ENSG00000281120 ENSG00000281120.1 lncRNA + - chr7:79139829-79177210:+ chr7:79171332:- chr7:78769145-78806526:+ chr7:78800648:- chr18:680144,chr18:680147 chr7:79171678,chr7:79171682 NA NA chr18:680144,chr18:680147 chr7:78800994,chr7:78800998 NA NA sense antisense out-of-frame CDS/splice-site intron translocation/5'-5' medium none Enolase_C-terminal_domain-like(40%),Mandelate_racemase_/_muconate_lactonizing_enzyme__N-terminal_domain(100%)| MR_MLE_C(45%),MR_MLE_N(100%)| 1 3 1 755 6 ENST00000383578.7 unknown upstream downstream mismatches(1) CCAG___GTTTAAAGTAAAGGTGGGTGCTGATCTCCAGGATGACATGCGAAGATGCCAAATCATCCGAGACATGATTGGACCGGAAAAGACTTTG___ATGATGGATGCCA...GCTGGGATGTGCCTGAGGCGGTGGAGTGGATGTCCAAGCTGGCCAAGTTCAAGCCATTGTGGATTGAGGAGCCAACCTCCCCTGATGACATTCTGGGGCACGCCACCATTTCCAAG|GGAAGATTTGGACACAAAGGCACACTCAGGGGGAGAATACCCTGTGAAGACTGAAGTTATGTTGCTGTAAGCCAAAGAAACGCCAGAAGCTAAGAGAAGGTCTTGGAACAAATCCTTCCCTACTGCCTTCAGAAGAGGATAATCCTGCTGATACCTTGATTTCAGgCTTCTGACTTCTAGAACCATGGGAA WDVPEAVEWMSKLAKFKPLWIEEPTSPDDILGHATISK|grfghkgtlrgripced* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27891 PRTG::DNAAF4 ENSG00000166450.13::ENSG00000256061.7 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PRTG ENSG00000166450.13 protein_coding - - chr15:55611544-55743152:- chr15:55672445:- chr15:55903742-56035350:- chr15:55964643:- DNAAF4 ENSG00000256061.7 protein_coding - - chr15:55410525-55508234:- chr15:55497810:- chr15:55702723-55800432:- chr15:55790008:- chr15:55645433,chr15:55645516 chr15:55501395,chr15:55501527 NA NA chr15:55937631,chr15:55937714 chr15:55793593,chr15:55793725 NA NA sense sense in-frame CDS/splice-site CDS/splice-site deletion/read-through low none Fibronectin_type_III_domain(54%),Immunoglobulin_I-set_domain(100%),Immunoglobulin_domain(100%)|CS_domain(27%) I-set(100%),Ig_2(100%),Ig_3(100%),fn3(7%),ig(100%)|CS(10%),DUF4490(100%) 5 4 0 36 59 ENST00000389286.9 ENST00000448430.6 upstream downstream mismatches(1) ATTTGGAGCCTCTGAACTGTACCACCATTTCTGTGAGGTGGCAGCAAGATGTAGAGGACACAGCTGCTATTCAGGGCTACAAGCTGTACTACAAGGAAGAAGGGCAGCAGGAGAATGGGCCCATTTTCTTGGATACCAAGGACCTACTCTATACTCTCAGTGGCTTAG|ACGATGAGAGCAGCAAAGCAAAGATTGGGAATGACACCATTGTCTTCACCTTGTATAAAAAAGAAGCGGCCATGTGGGAGACCCTTTCTGTGACGGGTG___TTGACAAAGAGATGATGCAAAGAATTAGAGAAAAATCTATTTTACAAGCACAAGAGAGAGCAAAAGAAGCTACAGAAGCAAAAGCTGCAGCAAAGCGGGAAGATCAAAAATACGCACTAAGTGTCATGATGAAG___ATTGAAGAAGAAGAGAGGAAAAAAATAGAAGATATGAAAGAAAATGAACGGATAAAAGCCACTAAAGCATTGGAAGCCTGGAA LEPLNCTTISVRWQQDVEDTAAIQGYKLYYKEEGQQENGPIFLDTKDLLYTLSGL|dDESSKAKIGNDTIVFTLYKKEAAMWETLSVTGVDKEMMQRIREKSILQAQERAKEATEAKAAAKREDQKYALSVMMKIEEEERKKIEDMKENERIKATKALEAW NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27900 FGD6::NDUFA12 ENSG00000180263.14::ENSG00000184752.14 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FGD6 ENSG00000180263.14 protein_coding - - chr12:95076749-95217482:- chr12:95205643:- chr12:95470525-95611258:- chr12:95599419:- NDUFA12 ENSG00000184752.14 protein_coding - - chr12:94895297-95003748:- chr12:94928263:- chr12:95289073-95397524:- chr12:95322039:- chr12:95183398 chr12:94965144 NA NA chr12:95577174 chr12:95358920 NA NA sense sense unknown intron CDS/splice-site deletion/read-through low none none |NDUFA12(0%) 0 1 1 1 2 unknown ENST00000552205.6 upstream downstream none GAAATTCAAGTCTTCCTGAGGAGGACACCTTGACACCCTGAGATCAAATAAATGAACAGTGAGGCATACATTTCAG|GTGCCCTGCTCTGAGCTGCTCTATG...AGGAACTGAAGATAATCTTCAATGCCAGCCAGCAAAAAACGGAGGTCCTCAGTCCAACATCCCACAAGGAAATGAATTCTGCCAACAACCGTGTGAATGAGACTGCAGTCTTGGTCAGAAATGCGATTGCAGCTTTCAGAAGAGACTCTGGAATAGAGGACCCAACAAACGGATGCCTGGACTCCTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27923 TUBD1::CLTC ENSG00000108423.15::ENSG00000141367.13 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2583 FALSE NA FALSE NA TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59878103:- chr17:57936840-57970306:- chr17:57955464:- CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59693728:+ chr17:57697045-57774317:+ chr17:57771089:+ chr17:59875632,chr17:59875638 chr17:59692433,chr17:59692427 NA NA chr17:57952993,chr17:57952999 chr17:57769794,chr17:57769788 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none Tubulin/FtsZ_family__GTPase_domain(100%)| Tubulin(47%)| 0 1 2 22 653 ENST00000325752.8 ENST00000269122.8 upstream upstream duplicates(60) CCCTCCTTCTTCATGAGAATGATGCCATCCATAAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATCAGCTGGGAAGTGTGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAG|GTCAGCCCCAGTTGATGCTGACAGCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGGTTATGGTTATACCGCACCACCGTATGGACAGCCACAGCCTGGCTTTGGGTACAGCATGTGAGATGAAGCGCTGATCCTGTAGTCACCTATTTTCGTACTGAAACATCG LLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPL|gQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGYSM* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation 27924 GLG1::LINC01572 ENSG00000090863.12::ENSG00000261008.9 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE FALSE NA FALSE NA FALSE NA GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74606657:- chr16:74481325-74641042:- chr16:74640555:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72523415:- chr16:72270180-72698913:- chr16:72557314:- chr16:74581064,chr16:74581066 chr16:72552346,chr16:72552345 NA NA chr16:74614962,chr16:74614964 chr16:72586245,chr16:72586244 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none Cysteine_rich_repeat(0%)| Cys_rich_FGFR(0%)| 1 1 0 138 49 ENST00000205061.9 ENST00000624829.4 upstream downstream duplicates(27) CCTGCAGGGAGGACGTGACCCGCGTGTGCCCTAAGCACACCTGGAGCAACAACCTGGCGGTGCTCGAGTGCCTGCAGGATGTGAGGGAG|TGAAGACTGAAGCCTTAGGCTATGGCAGAAGTTGGGCGCCTGAAGTACACGTGG...ACTGAACATTGGACTACCAC___GTCAAGGGTCTCCTACCCCTGGGCCATGGATCAATACCAGTCTGTGACCTGTTAGGAACCGGTAGCAGGAG___CGCCTGCCC CREDVTRVCPKHTWSNNLAVLECLQDVRE|* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27925 PPP6R3::ASRGL1 ENSG00000110075.15::ENSG00000162174.12 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary arriba TRUE TRUE TRUE 2584 FALSE NA FALSE NA PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68460827:+ chr11:68228199-68382802:+ chr11:68228295:+ ASRGL1 ENSG00000162174.12 protein_coding + + chr11:62337448-62393412:+ chr11:62389133:+ chr11:62104920-62160884:+ chr11:62156605:+ chr11:68476299,chr11:68476296 chr11:62368519,chr11:62368513 NA NA chr11:68243767,chr11:68243764 chr11:62135991,chr11:62135985 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication medium none |Asparaginase(44%) |Asparaginase_2(5%) 0 4 0 91 70 ENST00000393800.7 ENST00000415229.6 downstream upstream duplicates(28) AGCGCGTTTCCCGCCTGAGCGCAACTAGCGGCGGGTCGTGGGCACCTCCAG|AAACTTGGGAACCGTGGGTGCTGTTGCCTTGGACTGCAAAGGGAATGTAGCCTACGCAACCTCCACAGGCGGTATCGTTAATAAAATGGTCGGCCGCGTTGGGGACTCACCGTGTCTAG___GAGCTGGAGGTTATGCCGACAATGACATCGGAGCCGTCTCAACCACAGGGCATGGGGAAAGCATCCTGAAGGTGAACCTGG...ATAGAACAAG___GAAAGACGGTAGAAGAGGCTGCGGACCTATCGTTGGGTTATATGAAGTCAAGGGTTAAAGGTTTAGGTGGCCTCATCGTGGTTAGCAAAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27935 CAPZB::SMAP2 ENSG00000077549.19::ENSG00000084070.12 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19419661:- chr1:19665269-19812033:- chr1:19746155:- SMAP2 ENSG00000084070.12 protein_coding + - chr1:40344850-40423326:+ chr1:40407482:- chr1:40810522-40888998:+ chr1:40873154:- chr1:19388079,chr1:19388081 chr1:40418915,chr1:40418914 NA NA chr1:19714573,chr1:19714575 chr1:40884587,chr1:40884586 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none F-actin_capping_protein__beta_subunit(10%)| F_actin_cap_B(0%)| 6 8 10 1061 77 ENST00000264202.8 unknown upstream downstream duplicates(92),mismappers(1),mismatches(2) GGAAGCGCCGGGCCCTGCTGCGGGGGGGAGAGCCACTGACGCCGGGACCGGGACCGCCGCCGCCGCCaCCACCATG___AGTGATCAGCAGCTGGACTGTGCCTTGGACCTAATGAGGCGCCTGCCTCCCCAGCAAATCGAGAAAAACCTCAGCGACCTGATCGACCTG|GGTCTCACTCTATTGCTCAGGCTAGAGTGCAATGGCATGATCATGACTAACCGCAGCTTCAACTTCTGGGCTCAAGCAATCCTCCCACCTCAGCTTCCCAAACTGCTGGGATTACAG___GTTTGACTGAAATTCATCTGGAATTCCTTTTACATAGATATATGGAAGCAGCTGACTCACTCTTGG MSDQQLDCALDLMRRLPPQQIEKNLSDLIDL|gltlllrlecngmimtnrsfnfwaqailppqlpkllglqv* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27938 SREK1::HOMER1 ENSG00000153914.16::ENSG00000152413.15 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 2586 FALSE NA FALSE NA SREK1 ENSG00000153914.16 protein_coding + + chr5:66139971-66183615:+ chr5:66164897:+ chr5:65435799-65479443:+ chr5:65460725:+ HOMER1 ENSG00000152413.15 protein_coding - - chr5:79372636-79514134:- chr5:79457018:- chr5:78668459-78809957:- chr5:78752841:- chr5:66169116,chr5:66169087 chr5:79479722,chr5:79479745 NA NA chr5:65464944,chr5:65464915 chr5:78775545,chr5:78775568 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)|WH1_domain(100%) RRM_1(100%),RRM_5(100%)|WH1(100%) 3 4 3 217 71 ENST00000334121.11 ENST00000334082.11 downstream downstream duplicates(39) CAGGCCACTGAA___AATAAATCACTCCAACAATGCAATAGTAAAACCCCCTGAGATGACACCTCAGGCTGCAGCTAAGGAGTTAGAAGAAGTAATGAAGCGAG...ATTTATCTCAGCAGCTATTGAACCAG___AGTCTGGAAAGAGCAATGAAAGAAAAGGCGGTCGATCTCGTTCCCATACTCGCTCAAAATCCAGGTCTAGCTCAAAATCCCATTCTAGAAGGAAAAGATCACAATCAAAACACAG|GGAACAACCTATCTTCAGCACTCGAGCTCATGTCTTCCAAATTGACCCAAACACAAAGAAGAACTGGGTACCCACCAGCAAGCATGCAGTTACTGTGTCTTATTTCTATGACAGCACAAGAAATGTGTATAGGATAATCAGTTTAGATGGCTCAAAG___GCAATAATAAATAGTACCATCACCCCAAACATGACATTTACTAAAACATCTCAGAAGTTTGGCCAGTGGGCTGATAGCCGGGCAAACACCGTTTATGGATTGGGATTCTCCTCTGAGCATCATCTTTCGAAA___TTTGCAGAAAAGTTTCAGGAATTTAAAG FISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHr|EQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27939 HOMER1::SREK1 ENSG00000152413.15::ENSG00000153914.16 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 2587 FALSE NA FALSE NA HOMER1 ENSG00000152413.15 protein_coding - - chr5:79372636-79514134:- chr5:79512770:- chr5:78668459-78809957:- chr5:78808593:- SREK1 ENSG00000153914.16 protein_coding + + chr5:66139971-66183615:+ chr5:66170051:+ chr5:65435799-65479443:+ chr5:65465879:+ chr5:79479738,chr5:79479740 chr5:66169107,chr5:66169105 NA NA chr5:78775561,chr5:78775563 chr5:65464935,chr5:65464933 NA NA sense sense in-frame CDS/splice-site CDS/splice-site inversion high none none none 1 0 3 49 214 ENST00000334082.11 ENST00000334121.11 upstream upstream duplicates(18) CTCTGTTTGAACGTTTTGGTATTTACAAGAGAGAAATCATTTTACCTAAGAGAACTAATTGAATTGGCAGCATCCTTGAAATACCTCCGGACAAGGATCTGGGGGTGGGGGTGGAAAAGCAACTGCGAAATAGCAGACGGAGAAATTCCTTTGGAAGTTATTCCGTAGCATAAGAGCTGAAACTTCAGAGCAAGTTTTCATTGGGCAAAATGGG|GAGTAGATCCCATAATAGATCACGTTCAAGACAGAAAG...GATCTAAGAGCCCACATAAAAAACGCTCTAAATCAAGGGAGAGACtGAAGTCAAGGAGTCGTTCGCATTCACG___GGACAAGAGAAAAGACACTCGAGAAAAGATCAAGGAAAAGGAAAGAGTGAAAGAGAAAGACAGGGAAAAGGAGAGAGAGAGGGAAAAG Mg|SRSHNRSRSRQK NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27940 SLX4IP::PTPRT ENSG00000149346.15::ENSG00000196090.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA SLX4IP ENSG00000149346.15 protein_coding + + chr20:10435305-10636829:+ chr20:10601819:+ chr20:10415953-10617477:+ chr20:10582467:+ PTPRT ENSG00000196090.14 protein_coding - + chr20:42072752-43189970:- chr20:42679485:+ chr20:40701392-41818610:- chr20:41308125:+ chr20:10619217,chr20:10619219 chr20:42635311,chr20:42635309 NA NA chr20:10599865,chr20:10599867 chr20:41263951,chr20:41263949 NA NA sense antisense stop-codon CDS/splice-site intron deletion/5'-5' high none Uncharacterized_protein_family_UPF0492(35%)| UPF0492(68%)| 5 0 1 41 26 ENST00000334534.10 unknown downstream upstream duplicates(38),mismatches(1) TATAAAGCCCGAGCCCAAACCCCGCCACCATCATAG___GTCTGTAGTTACTGTGGAATCAATAAGCCATGGCATCTAAGAAATTTGCTGTTAAA___GTTATGGCTTTCAAATCACAGCCTATTTCCTCAAGAGAGGGATACGCCTTCGCTGCATCAGGAGCACACAGAATGCTG___AACTCTGTGTATTCCCTGACAGATTTGTGGTTTGTGTCAGTCAGCTTGCATTCAGTCGTGATCTTTTAGCAAGTCAGAATGAAGATTTG|TAAAAATGGCAGAACAATAAAGAAAATGGAAGAAAGAGAAAATATGAGAAGAAATGGAAGAAAATGGAGAAAAATGGAAGAAAGAGAAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27941 CPT1A::LRP5 ENSG00000110090.13::ENSG00000162337.12 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68815334:- chr11:68522088-68611878:- chr11:68582802:- LRP5 ENSG00000162337.12 protein_coding + - chr11:68312591-68449275:+ chr11:68314312:- chr11:68080059-68216743:+ chr11:68081780:- chr11:68814658,chr11:68814308,chr11:68814669 chr11:68316002,chr11:68316007,chr11:68316010 NA NA chr11:68582126,chr11:68581776,chr11:68582137 chr11:68083470,chr11:68083475,chr11:68083478 NA NA sense antisense out-of-frame CDS/splice-site intron deletion/5'-5' high none Carnitine_O-palmitoyltransferase_N-terminus(100%)| CPT_N(100%)| 2 2 2 216 53 ENST00000376618.6 unknown upstream downstream duplicates(21),mismatches(1) CGCCGCTGCCGCTGCCGCTGCCGCACCTCCGTAGCTGACTCG___GTACTCTCTGAAGATGGCAGAAGCTCACCAAGCTGTGGCCTTTCAGTTCACGGTCACTCCGGACGGGATTGACCTGCGGCTGAGCCATGAAGCTCTTAGACAAATCTATCTCTCTGGACTTCATTCCTGGAAAAAGAAGTTCATCAGATTCAAG|GGGCTCGAACCACATGGACGACAGGCATTTGACTCCAGCAACATCACCCCAAAACGTGCACAAAACCCAAAACTGCAATGAGGTGAAAGGCAACGCGGTCGGCCTAGAAACCCCCCCTTTAAAACAAACAGTTTCCCCAAAACCCCTTTTGCCTCCTTGACCCAGGCATTTCCGGAAAAAGGAGCGGCG MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFK|glephgrqafdssnitpkraqnpklq* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27942 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 2588 FALSE NA FALSE NA ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151573174:+ chr6:151815152-151942328:+ chr6:151894309:+ chr6:151729820,chr6:151729820,chr6:151729816 chr6:151557662,chr6:151557666,chr6:151557655 NA NA chr6:152050955,chr6:152050955,chr6:152050951 chr6:151878797,chr6:151878801,chr6:151878790 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site duplication high none none none 0 3 3 40 29 ENST00000440973.5 ENST00000239374.8 downstream upstream duplicates(36),mismappers(1),mismatches(2) CCAGAACCCAACCACGCTGGCACCTTGATTTTGGACTTCTAGTCTCCAGCACT___GAAGAAGAAAACTAGGAAGGAGTAAGCACAAAGATCTCTTCACATTCTCCGGGACTGCGGTACCAAATATCAGCACAGCACTTCTTGAAAAAGGATGTAGATTTTAATCTGAACTTTGAACCATCACTGAG|GACCTGCTCAGTGCTGTAGAAGCAAAAGAAGCTCTTGAAAGGGAAGTTAAGATCTTCCAAGAAAGGCTGCTTGCTGGCCAGCAGGTCTGGGATGCCTCAAAGCAGGAAGTGAGCCTCCTGAAGAAAAGCTCTTCTGAGTTGGAGAAGAGTTTGAAGGCCAGTCAGGATGCAGTCACAACCTCACAAAGCCAGTACTcCTCATTTAGGGAGAAAATCGCAGCCCTCCTTAGGGGCAGATTGAGCATGACTG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 27943 EXOSC10::KPNA6 ENSG00000171824.14::ENSG00000025800.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EXOSC10 ENSG00000171824.14 protein_coding - - chr1:11066618-11099869:- chr1:11076842:- chr1:11126675-11159926:- chr1:11136899:- KPNA6 ENSG00000025800.14 protein_coding + + chr1:32108056-32176563:+ chr1:32156853:+ chr1:32573657-32642164:+ chr1:32622454:+ chr1:11074635,chr1:11074637 chr1:32155782,chr1:32155780 NA NA chr1:11134692,chr1:11134694 chr1:32621383,chr1:32621381 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion high none 3'-5'_exonuclease(100%),HRDC_domain(100%),PMC2NT_(NUC016)_domain(100%)|Armadillo/beta-catenin-like_repeat(100%),Atypical_Arm_repeat_(100%),Importin_beta_binding_domain(62%) DNA_pol_A_exo1(100%),HRDC(100%),PMC2NT(100%)|Arm(100%),Arm_3(100%),HEAT_2(100%),HEAT_EZ(100%),IBB(20%) 1 0 4 215 78 ENST00000474216.5 ENST00000373625.8 upstream upstream duplicates(32),mismatches(1) CTCAGGGCATCATAGCTTGCTGCAACCCAGTACCGCCCCTTGTGCGGCAGCAGATCAACGAAATGCACCTTTTAATCCAGCAGGCCCGAGAGATGCCCCTG...ATCCCAACCAGTG___...AAATTCTGTAGGCTTTGACCTTACTATCTTCTGCTCCTCTAGGATCTGTGCCAGTTCAGAAGCAGGCGAGCCTCTTCCCTGATGAAAAAGAAGATAACTTGCTGGGTACCACATGCCTGATTGCCACAGCTGTCATCACGTTATTTAAT|CTTTTTAAACGGAGAAATGTGGAGCTGATTAATGAAGAAGCTGCCATGTTCGATAGTCTTCTCATGGACTCTTATGTGAGCTCTACCACTGGG___GAGAGTGTGATCACAAGAGAGATGGTGGAGATGCTCTTT unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27944 STAG3L4::TYW1 ENSG00000291153.1::ENSG00000198874.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 2589 TRUE 4711 TRUE 1787 STAG3L4 ENSG00000291153.1 lncRNA + + chr7:67302621-67362950:+ chr7:67306083:+ chr7:66767608-66827937:+ chr7:66771070:+ TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67083430:+ chr7:66460160-66704501:+ chr7:66548417:+ chr7:67306916,chr7:67306914 chr7:67068500,chr7:67068495 NA NA chr7:66771903,chr7:66771901 chr7:66533487,chr7:66533482 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication high none |Radical_SAM_superfamily(91%),Wyosine_base_formation(100%) |Radical_SAM(86%),Wyosine_form(100%) 1 2 2 40 65 ENST00000647855.1 ENST00000359626.10 downstream upstream duplicates(31) GGCTCTCTAACGTGCAAGGCAGGAGCGGCGGCCCAGCGCCCGGCGTTGGCCACCTACAG___TCTTTGGTAGATGAGTGGCTGGATAGCTACAAGCAAGACCAGGATGCAGGATTTCTGGAGCTTGTTAACTTTTTCATCTGATCTTGTGGATGTAAAG|GCACCACACCAACCCCGTGGGCACTGAGTGGCGGTGGAAGATGGACCAGCCTGAAATGATCTTGAAGGAAGCCATTGAAAACCATCAGAACATGATTAAGCAGTTTAAAG___GAGTACCGGGCGTCAAAGCAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27945 STAG3L4::TYW1 ENSG00000291153.1::ENSG00000198874.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4711 TRUE 1787 STAG3L4 ENSG00000291153.1 lncRNA + + chr7:67302621-67362950:+ chr7:67302885:+ chr7:66767608-66827937:+ chr7:66767872:+ TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67083430:+ chr7:66460160-66704501:+ chr7:66548417:+ chr7:67306916,chr7:67306914 chr7:67068500,chr7:67068495 NA NA chr7:66771903,chr7:66771901 chr7:66533487,chr7:66533482 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication medium none |Radical_SAM_superfamily(91%),Wyosine_base_formation(100%) |Radical_SAM(86%),Wyosine_form(100%) 0 1 1 112 65 ENST00000647855.1 ENST00000359626.10 downstream upstream duplicates(6) CCTCTCCGTGTGGAGCTTCCCACCTGCATGTACCGGCTCTCTAACGTGCAAGGCAGGAGCGGCGGCCCAGCGCCCGGCGTTGGgCACCTACAG|GgACCACACCAACCCCGTGGGCACTGAGTGGCGGTGGAAGATGGACCAGCCTGAAATGATCTTGAAGGAAGCCATTGAAAACCATCAGAACATGATTAAGCAGTTTAAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27946 MAPKAP1::PBX3 ENSG00000119487.17::ENSG00000167081.18 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MAPKAP1 ENSG00000119487.17 protein_coding - - chr9:125437393-125707234:- chr9:125657651:- chr9:128199672-128469513:- chr9:128419930:- PBX3 ENSG00000167081.18 protein_coding + - chr9:125747345-125967377:+ chr9:125944252:- chr9:128509624-128729656:+ chr9:128706531:- chr9:125624218,chr9:125624218 chr9:125953484,chr9:125953322 NA NA chr9:128386497,chr9:128386497 chr9:128715763,chr9:128715601 NA NA sense antisense unknown CDS/splice-site intron duplication/5'-5' high none SAPK-interacting_protein_1_(Sin1)__middle_CRIM_domain(21%),Stress-activated_map_kinase_interacting_protein_1_(SIN1)(100%)| CRIM(0%),SIN1(100%)| 1 1 2 345 24 ENST00000394063.5 unknown upstream downstream duplicates(21),mismappers(1) CGGGAAGCGGCAGCTGAGCGGGCCGGGAGGAGCGCCGGTCCCCGTGGATCCCGAGAGTGCAGAGCTCGGGGCAGGGGCCGGGAGGCGTGGGGGgGCCGGGC...CACTGTTTGAAAAAAAATCTCTCAAAGAGAAGCCTCCAATTTCTGGGAAGCAGTCGATATTATCTGTACGCCTAGAACAGTGCCCTCTGCAGCTGAATAACCCTTTTAACGAGTATTCCAAATTTGATGGCAAG|CTGACAGAAGAATTGGGAGAGAAATCAAAAGAGAAGAAACAAGGAAAGCCCAAGAGCATCTCTGGAGAAGGTTTCTGGATGCAAACATCACAGAATCAACAGAAGTGGGAAGCCAGGgGGCTTGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27948 CAMTA1::GPATCH3 ENSG00000171735.21::ENSG00000198746.13 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CAMTA1 ENSG00000171735.21 protein_coding + + chr1:6785454-7769706:+ chr1:7677733:+ chr1:6845514-7829766:+ chr1:7737793:+ GPATCH3 ENSG00000198746.13 protein_coding - + chr1:26890488-26900467:- chr1:26900007:+ chr1:27216979-27226958:- chr1:27226498:+ chr1:7710627 chr1:26898160 NA NA chr1:7770687 chr1:27224651 NA NA sense antisense out-of-frame CDS/splice-site CDS deletion/5'-5' high none CG-1_domain(100%),IPT/TIG_domain(100%)| CG-1(100%),TIG(100%)| 2 1 0 13 74 ENST00000303635.12 unknown downstream upstream duplicates(7) GTGACCGACTACTCCCCAGAGTGGTCTTACCCAGAG___GGAGGAGTGAAGGTCCTCATCACAGGCCCGTGGCAAGAAGCCAGCAATAACTACAGCTGCCTGTT...CCTGATTCAGCCTGGGGTGCTGCGCTGCTACTGCCCAG___CCCATGACACTGGTCTTGTGACCCTACAAGTTGCCTTCAACAACCAGATCATCTCCAACTCGG...GAGTACAAAGCCCGGGCTCTGCCCACGCTCCCTTCCTCCCAGCACGACTGGCTGTCGTTGGACG|GTAGCCGAAGTCTGCGGATGAGACAGCGACCCGGTAGCCAAGTCCCGTGAGAATCCAG...CCCCTTACCGAGATGACGCAGCAGCAGGTGCGGGTCTGGATTGGAGTAGAGTCTCGAGTGGAGAGAGGCCGGACATCGGTGGCCGAAGTCTGAGAGAGAAG EYKARALPTLPSSQHDWLSLD|gsrslrmrqrpgsqvp* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE calmodulin binding transcription activator 1 1 Yes epithelioid haemangioendothelioma mesenchymal TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27950 AFG3L2::SPIRE1 ENSG00000141385.12::ENSG00000134278.16 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE FALSE FALSE NA FALSE NA FALSE NA AFG3L2 ENSG00000141385.12 protein_coding - - chr18:12328944-12377227:- chr18:12376969:- chr18:12328943-12377226:- chr18:12376968:- SPIRE1 ENSG00000134278.16 protein_coding - - chr18:12446512-12658107:- chr18:12546904:- chr18:12446511-12658106:- chr18:12546903:- NA NA NA NA NA NA NA NA sense sense in-frame CDS/splice-site CDS/splice-site duplication high none |Kinase_non-catalytic_C-lobe_domain(56%) |KIND(9%) 2 1 0 76 51 ENST00000269143.8 ENST00000409402.9 upstream downstream duplicates(3) ACGGCGGCGGCCATGGCGCACCGCTGTTTGCGGCTGTGGGGCCGGGGCGGCTGCTGGCCCCGCGGCCTACAGCAGCTCCTCGTGCCTGGCGGCGTGGGCCCGGGCGAGCAGCCCTGCCTCCGGACG|GTCATTGAATCTTTGGGAATTATTATTTATAAAGCACTGGACTATGGTTTGAAGGAGAATGAAGAAAGGGAATTAAGCCCTCCCCTAGAGCAGCTTATCG MAHRCLRLWGRGGCWPRGLQQLLVPGGVGPGEQPCLRT|VIESLGIIIYKALDYGLKENEERELSPPLEQLI NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27951 RAD9A::FUT10 ENSG00000172613.8::ENSG00000172728.16 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RAD9A ENSG00000172613.8 protein_coding + + chr11:67317871-67398410:+ chr11:67318197:+ chr11:67085342-67165881:+ chr11:67085668:+ FUT10 ENSG00000172728.16 protein_coding - - chr8:33370824-33473146:- chr8:33461725:- chr8:33228342-33330664:- chr8:33319243:- chr11:67322388 chr8:33468364 NA NA chr11:67089859 chr8:33325882 NA NA sense sense unknown exon/splice-site 5'UTR/splice-site translocation high none |Fucosyltransferase__N-terminal(100%),Glycosyltransferase_family_10_(fucosyltransferase)_C-term(100%) |Glyco_tran_10_N(100%),Glyco_transf_10(100%) 0 1 2 58 60 ENST00000622583.4 ENST00000518672.5 downstream downstream duplicates(7) GGGTCCTCGAGGCCGAGATCTGGCTGTGGCCCGCGAAGCCCCGCTTGCCCGCGCCAGCGTCTTGTCACCCCGAGCCGAGGGCCTGCGCGCGGCCGACAG|AATTTTTTTGATTCCTTCTTATTTGGAGAAATCTCCAGCTGCTCTGATGATAGCCTAAGAAGACTGCATGCTGCTTCCTCTCGATGCCAAGCCAGACCCTCTCACAACCTCGGATCTCAGTCCTTCATGGAGACCTGGTCCCAGCAGGAATGGCAGTG...TCTGCTTGTCACACTCCAG___GTCATGGTTGAGCTGGGGAAGTTTGAAAGGAAGGAGTTTAAAAGTTCCAGTTTGCAAGATGGACATACAAAAATGGAGGAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27953 EPB41::ENSG00000285853 ENSG00000159023.23::ENSG00000285853.1 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA EPB41 ENSG00000159023.23 protein_coding + + chr1:28887091-29120046:+ chr1:28987905:+ chr1:29213603-29446558:+ chr1:29314417:+ ENSG00000285853 ENSG00000285853.1 lncRNA + + chr1:16515034-16521788:+ chr1:16520732:+ chr1:16841529-16848283:+ chr1:16847227:+ chr1:28988492 chr1:16515887 NA NA chr1:29315004 chr1:16842382 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site duplication high none FERM_N-terminal_domain_(7%)| FERM_N(0%)| 1 0 1 94 7 ENST00000643155.1 ENST00000648419.1 downstream upstream duplicates(9) CTTGACCAAGAACAAGGAGCGGACATCAGAAAGCAGAGGACTTTCACGACTATTCTCCTCGTTTCTCAAAAGGCCCAAATCTCAGGTGTCCGAGGAAGAAG...GAAGAGATCATTTTAAAGGCCCCAATTGCAGCTCCTGAACCGGAACTCAAAACAGACCCATCTTTGGATCTTCATTCATTAAGCAGTGCAGAAACACAG|GGCCCACCGGGCAGGACCACTGAGCAAGGCCTTGGAAAACCAGAGAGATTAGAGCGGTGAGTCGCGCCGGTCACGTTGGACGCCTGCGcGTTAGGAGATTCTGGAGCCAGA EEIILKAPIAAPEPELKTDPSLDLHSLSSAETQ|gppgrtteqglgkperler* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27954 FHOD1::LINC02882 ENSG00000135723.14::ENSG00000251138.7 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4712 TRUE 1788 FHOD1 ENSG00000135723.14 protein_coding - - chr16:67229387-67247481:- chr16:67231430:- chr16:67263290-67281384:- chr16:67265333:- LINC02882 ENSG00000251138.7 lncRNA - - chr12:73820315-74402600:- chr12:73878854:- chr12:74214095-74796380:- chr12:74272634:- chr16:67231314,chr16:67231319 chr12:73895829,chr12:73895831 NA NA chr16:67265217,chr16:67265222 chr12:74289609,chr12:74289611 NA NA sense sense out-of-frame CDS/splice-site intron translocation high none Formin_Homology_2_Domain(58%),Formin_N-terminal_GTPase-binding_domain(100%)| FH2(70%),Formin_GBD_N(100%)| 0 1 1 292 1 ENST00000258201.9 unknown upstream downstream duplicates(9) CTCAACTTTGATGAGTTTGCTGTCAGCAAGGATGGCATTGAG___GAAATTGCTGAGCCACTGTTTGACCTGAAAGTGGGTATGGAACAGCTGGTACAGAATGC...CCTCAATGGCTCCCAG|ATTACCTAAGGAGATGATGAGGAGGAGATGGCAAGAGGAGTAAGATGAAGAAGGGCTATATGTTTACATATATGTAGTATAAACACAAATATAT LNGSQ|it* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27955 FHOD1::LINC02882 ENSG00000135723.14::ENSG00000251138.7 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA TRUE 4712 TRUE 1788 FHOD1 ENSG00000135723.14 protein_coding - - chr16:67229387-67247481:- chr16:67232039:- chr16:67263290-67281384:- chr16:67265942:- LINC02882 ENSG00000251138.7 lncRNA - - chr12:73820315-74402600:- chr12:73838143:- chr12:74214095-74796380:- chr12:74231923:- chr16:67231314,chr16:67231319 chr12:73895829,chr12:73895831 NA NA chr16:67265217,chr16:67265222 chr12:74289609,chr12:74289611 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site translocation low none Formin_Homology_2_Domain(31%),Formin_N-terminal_GTPase-binding_domain(100%)| FH2(52%),Formin_GBD_N(100%)| 1 0 0 208 0 ENST00000258201.9 ENST00000663261.1 upstream downstream duplicates(3) CTGGACCCCAAGCGCAGCAACGCCATCAACATCGGCCTAACCACACTGCCACCTGTGCATGTCATTAAGGCTGCTCTGCTCAACTTTGATGAGTTTGCTGTCAGCAAGGATGGCATTGAG|GTTTAATGCGCGTCCGTGTGAAGAGACCTGTCAATA LDPKRSNAINIGLTTLPPVHVIKAALLNFDEFAVSKDGIE|v* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27957 CHD6::BPI ENSG00000124177.16::ENSG00000101425.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA CHD6 ENSG00000124177.16 protein_coding - - chr20:41402083-41618384:- chr20:41618340:- chr20:40030723-40247023:- chr20:40246979:- BPI ENSG00000101425.14 protein_coding + + chr20:38304150-38337505:+ chr20:38334430:+ chr20:36932552-36965907:+ chr20:36962832:+ chr20:41595031,chr20:41595033 chr20:38332742,chr20:38332740 NA NA chr20:40223670,chr20:40223672 chr20:36961144,chr20:36961142 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |LBP_/_BPI_/_CETP_family__C-terminal_domain(24%) |LBP_BPI_CETP_C(21%) 0 4 0 38 56 ENST00000482596.1 ENST00000262865.9 upstream upstream duplicates(26) CTAAACTTCACCAAATAATAGCTGTTTGTATTTTGGCTGCTGCAGGAGCCATTTTAG|GTTGAATTGCTGCAGGATATCATGAACTACATTGTACCCATTCTTGTGCTGCCCAGGGTTAACG___AGAAACTACAGAAAGGCTTCCC...ACGTAGTGCTTCAGCCTCACCAG___AACTTCCTGCTGTTCGGTGCAGACGTTGTCTATAAATGAAGGCACCAGGGGTGCCGGGGGCTGTCAGCCgCACCTGTT...CCTTGGCCAGAGCCCTGCCGTCCATACTGCTGGCATTGCTGCTTACGTCCACCCCAGAGGCTCTGGGTGCCAACCCCGGCTTGGTCGCCAGGATCACCGAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27958 PADI2::LRRC38 ENSG00000117115.13::ENSG00000162494.6 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA PADI2 ENSG00000117115.13 protein_coding - - chr1:17066761-17119451:- chr1:17074856:- chr1:17393256-17445946:- chr1:17401351:- LRRC38 ENSG00000162494.6 protein_coding - + chr1:13474973-13514003:- chr1:13498750:+ chr1:13801441-13840498:- chr1:13825202:+ chr1:17071892,chr1:17071894 chr1:13498473,chr1:13498471 NA NA chr1:17398387,chr1:17398389 chr1:13824925,chr1:13824923 NA NA sense antisense out-of-frame CDS/splice-site intron inversion/5'-5' medium none Protein-arginine_deiminase_(PAD)(61%),Protein-arginine_deiminase_(PAD)_N-terminal_domain(100%),Protein-arginine_deiminase_(PAD)_middle_domain(100%)| PAD(62%),PAD_M(100%),PAD_N(100%)| 0 4 0 89 177 ENST00000375486.9 unknown upstream upstream duplicates(41),mismatches(2) GTCTGGcGGTCGGtGGcTGACCAAGGTGGTGCGTGACTTCCT?AAGGCCCAGCAGGTGCAGGCaCCCGTGGgGCTCTACTCcGACTGG...CCAGCACCTCGGCCTGCTACAAGCTCTTCCGAGAGAAGCAGAAGGACGGCCATGGAGAGGCCATCATGTTCAAAG|GTGTTTCCTGGGGTGGCTGCAACACAATACCACCAACTGGGTGGCTTATACAACGGAAATGCTTGTCTCAGAATTCTGCAGGCTGAACATCTGAGATCAAGGCATCGGCAGCGCTGGTTCTCTCCAGGGGCTGTAGGAAGAATGTGTTCCAGGCCTCCCCACTGGCTCCGGTGGTTTGCTGGGAATCTCTGGCTTTCCTTAG...CCTCTGCCTTCATCTTCACGTGGCCTTCTCCCGGTGTGCGTGTCTGTCCAAATTCCCCCTTTTTATAAGGACACCAGTCATACTGAGTTCAGGCTAACATC STSACYKLFREKQKDGHGEAIMFK|gvswggcntipptgwliqrkclsqnsag* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27959 NBL1::RCC2 ENSG00000158747.15::ENSG00000179051.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA NBL1 ENSG00000158747.15 protein_coding + + chr1:19596979-19658456:+ chr1:19597109:+ chr1:19923473-19984949:+ chr1:19923603:+ RCC2 ENSG00000179051.14 protein_coding - - chr1:17406760-17439677:- chr1:17429199:- chr1:17733256-17766173:- chr1:17755695:- chr1:19603521,chr1:19603600,chr1:19603601 chr1:17436986,chr1:17436986,chr1:17436985 NA NA chr1:19930015,chr1:19930094,chr1:19930095 chr1:17763482,chr1:17763482,chr1:17763481 NA NA sense sense unknown 5'UTR/splice-site CDS/splice-site inversion medium none |Regulator_of_chromosome_condensation_(RCC1)_repeat(100%) DUF543(0%)|RCC1(100%),RCC1_2(100%) 0 4 0 1320 119 ENST00000602662.1 ENST00000375436.9 downstream downstream duplicates(22) TCTGAGTCGGAGCTCGGCAGGAAGTGGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAG|AAACTTGAAGGGTCAAAGTGCAAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGTCGAAAAGAAGTGCCTAAACAGCAAG___CTGCTTACCGCAATCTCGGTCAGAATTTGTGGGGGCCCCACAGAcATGGGTGCCTGGCGGGGGTCCGGGTGCGGACAGTGGTCTCGGGCTCGTGTGCTGCACACAGCCTCCTCATCACCACGGAAGGGAAGCTGTGGAGCTGGG___GTCGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27960 MICOS10::RCC2 ENSG00000173436.15::ENSG00000179051.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE TRUE 2592 FALSE NA FALSE NA MICOS10 ENSG00000173436.15 protein_coding + + chr1:19484403-19629821:+ chr1:19597109:+ chr1:19810897-19956315:+ chr1:19923603:+ RCC2 ENSG00000179051.14 protein_coding - - chr1:17406760-17439677:- chr1:17429199:- chr1:17733256-17766173:- chr1:17755695:- chr1:19603521,chr1:19603600,chr1:19603601 chr1:17436986,chr1:17436986,chr1:17436985 NA NA chr1:19930015,chr1:19930094,chr1:19930095 chr1:17763482,chr1:17763482,chr1:17763481 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site inversion medium none Domain_of_unknown_function_(DUF543)(32%)|Regulator_of_chromosome_condensation_(RCC1)_repeat(100%) DUF543(0%)|RCC1(100%),RCC1_2(100%) 0 4 0 1320 119 ENST00000617872.4 ENST00000375436.9 downstream downstream duplicates(22) TCTGAGTCGGAGCTCGGCAGGAAGTGGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAG|AAACTTGAAGGGTCAAAGTGCAAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGTCGAAAAGAAGTGCCTAAACAGCAAG___CTGCTTACCGCAATCTCGGTCAGAATTTGTGGGGGCCCCACAGAcATGGGTGCCTGGCGGGGGTCCGGGTGCGGACAGTGGTCTCGGGCTCGTGTGCTGCACACAGCCTCCTCATCACCACGGAAGGGAAGCTGTGGAGCTGGG___GTCGAAA SESELGRKWDRCLADAVVKI|et* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27961 MICOS10-NBL1::RCC2 ENSG00000270136.6::ENSG00000179051.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MICOS10-NBL1 ENSG00000270136.6 protein_coding + + chr1:19597067-19656927:+ chr1:19597109:+ chr1:19923561-19983420:+ chr1:19923603:+ RCC2 ENSG00000179051.14 protein_coding - - chr1:17406760-17439677:- chr1:17429199:- chr1:17733256-17766173:- chr1:17755695:- chr1:19603521,chr1:19603600,chr1:19603601 chr1:17436986,chr1:17436986,chr1:17436985 NA NA chr1:19930015,chr1:19930094,chr1:19930095 chr1:17763482,chr1:17763482,chr1:17763481 NA NA sense sense unknown CDS/splice-site CDS/splice-site inversion medium none |Regulator_of_chromosome_condensation_(RCC1)_repeat(100%) DUF543(0%)|RCC1(100%),RCC1_2(100%) 0 3 0 1320 119 ENST00000602450.1 ENST00000375436.9 downstream downstream duplicates(13) GGGACCGGTGTCTGGCGGATGCGGTCGTGAAGATAG|AAACTTGAAGGGTCAAAGTGCAAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGTCGAAAAGAAGTGCCTAAACAGCAAG___CTGCTTACCGCAATCTCGGTCAGAATTTGTGGGGGCCCCACAGAcATGGGTGCCTGGCGGGGGTCCGGGTGCGGACAGTGGTCTCGGGCTCGTGTGCTGCACACAGCCTCCTCATCACCACGGAAGGGAAGCTGTGGAGCTGGG___GTCGAAA unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27966 FOXJ3::CAMTA1 ENSG00000198815.9::ENSG00000171735.21 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA FOXJ3 ENSG00000198815.9 protein_coding - - chr1:42176539-42335877:- chr1:42323127:- chr1:42642210-42801548:- chr1:42788798:- CAMTA1 ENSG00000171735.21 protein_coding + + chr1:6785454-7769706:+ chr1:7619697:+ chr1:6845514-7829766:+ chr1:7679757:+ chr1:42322918,chr1:42322920 chr1:7619373,chr1:7619371 NA NA chr1:42788589,chr1:42788591 chr1:7679433,chr1:7679431 NA NA sense sense unknown intron intron inversion low none |CG-1_domain(9%),IPT/TIG_domain(100%),IQ_calmodulin-binding_motif(100%) |CG-1(2%),IQ(100%),TIG(100%) 0 0 3 9 1 unknown unknown upstream upstream duplicates(12),multimappers(1) CTTTAATTATGGAATGTGCATTAACAACTCTTGAAATCCTCTGGAAAATATTACACTGGTCTGTATGGTAGAGGTGAGGTGGAAGGCTAGAAAGTGTTTTC...|...TGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTaaTGGGTTCAAGaGATTCTCGTGCCCCAGCaTCCTGAGTAGCTGGGATTATAGGCAAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE calmodulin binding transcription activator 1 1 Yes epithelioid haemangioendothelioma mesenchymal TSG, fusion translocation 27971 ZNF232::SCIMP ENSG00000167840.14::ENSG00000161929.15 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF232 ENSG00000167840.14 protein_coding - - chr17:5105269-5123162:- chr17:5108926:- chr17:5008564-5026457:- chr17:5012221:- SCIMP ENSG00000161929.15 protein_coding - - chr17:5208920-5234860:- chr17:5214998:- chr17:5112215-5138155:- chr17:5118293:- chr17:5107717 chr17:5220479 NA NA chr17:5011012 chr17:5123774 NA NA sense sense out-of-frame CDS/splice-site CDS/splice-site duplication low none SCAN_domain(100%)|SCIMP_protein(55%) SCAN(100%)|SCIMP(33%) 1 0 1 49 12 ENST00000575898.5 ENST00000574081.6 upstream downstream duplicates(1) CGGGGACATCACCCTAAGAGTGGAGAGGAGGCTGTGACTGTGCTGGAGGATTTAGAGAAAGGACTTGAACCAGAGCCGCAG___GTCCCAGGCCCTGCACATGGACCTGCACAGGAAGAGCCATGGGAGAAGAAGGAATCTCTGGGAGCAGCCCAGGAAGCACTGAGCATCCAtCTCCAGCCTAAGGAGACCCAGCCTTTCCCAAAGAGTG|GAATGTTCTTAATGAGTCGCCAGTTCAATTACCG RGHHPKSGEEAVTVLEDLEKGLEPEPQVPGPAHGPAQEEPWEKKESLGAAQEALSIhLQPKETQPFPKS|gmflmsrqfny NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27974 STAG3L4::TYW1 ENSG00000106610.17::ENSG00000198874.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA STAG3L4 ENSG00000106610.17 transcribed_unprocessed_pseudogene + + chr7:67305987-67309715:+ chr7:67306083:+ chr7:66770974-66774702:+ chr7:66771070:+ TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67083430:+ chr7:66460160-66704501:+ chr7:66548417:+ chr7:67306916,chr7:67306914 chr7:67068500,chr7:67068495 NA NA chr7:66771903,chr7:66771901 chr7:66533487,chr7:66533482 NA NA sense sense unknown exon/splice-site CDS/splice-site duplication low none |Radical_SAM_superfamily(91%),Wyosine_base_formation(100%) |Radical_SAM(86%),Wyosine_form(100%) 0 2 0 40 65 ENST00000352103.6 ENST00000359626.10 downstream upstream duplicates(14) CCAGGATGCAGGATTTCTGGAGCTTGTTAACTTTTTCATCTGATCTTGTGGATGTAAAG|GCACCACACCAACCCCGTGGGCACTGAGTGGCGGTGGAAGATGGACCAGCCTGAAATGATCTTGAAGGAAGCCATTGAAAACCATCAGAACATGATTAAGCAGTTTAAAG___GAGTACCGGGCGTCAAAGCAGAAC unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27975 ROR1::DNM3 ENSG00000185483.13::ENSG00000197959.15 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ROR1 ENSG00000185483.13 protein_coding + + chr1:63774017-64181498:+ chr1:64142650:+ chr1:64239688-64647181:+ chr1:64608333:+ DNM3 ENSG00000197959.15 protein_coding + - chr1:171817887-172418466:+ chr1:172048702:- chr1:171787027-172387606:+ chr1:172017842:- chr1:64158280,chr1:64158278,chr1:64158278 chr1:172050689,chr1:172050670,chr1:172050691 NA NA chr1:64623963,chr1:64623961,chr1:64623961 chr1:172019829,chr1:172019810,chr1:172019831 NA NA sense antisense out-of-frame CDS/splice-site CDS inversion/3'-3' high none Fz_domain(100%),Immunoglobulin_I-set_domain(100%),Kringle_domain(100%)| Fz(100%),I-set(100%),Ig_2(100%),Ig_3(100%),Kringle(100%),ig(100%)| 2 2 6 57 45 ENST00000371079.6 unknown downstream downstream duplicates(37),mismatches(2),multimappers(1) CTGCGAACTGTATCCGGATTGGAATTCCCATGGCAGATCCTATAAATAAAA___ATCACAAGTGTTATAACAGCACAGGTGTGGACTACCGGGGGACCGTCAGTGTGACCAAATCAGGGCGCCAGTGCCAGCCATGGAATTCCCAGTATCCCCACACACACACTTTCACCGCCCTTCGTTTCCCAGAGCTGAATGGAGGCCATTCCTACTGCCGCAACCCAGGGAATCAAAAGGAAGCTCCCTGGTGCTTCACCTTGGATGAAAACTTTAAGTCTGATCTGTGTGACATCCCAGCtTGCG|ATCCACACTCTTCAAGGAAGGCCCTTTCAACTTTACAATCTGTTTCTTGACTATCGCTTCAAATGCCATGTCTGGAGTAAACAACCCTGTCCTGAAG___TAATAAATTATTGTTAGCACCCTGGCATGCGTTGCTGTTCTAACTATGAAGCAGGCAACAAAAGAGCTGAGAGGACAGCATTCCCGACAGCAACGTCACAAGAGACAAGGACCCAAATCTAACAGAAC ANCIRIGIPMADPINKNHKCYNSTGVDYRGTVSVTKSGRQCQPWNSQYPHTHTFTALRFPELNGGHSYCRNPGNQKEAPWCFTLDENFKSDLCDIPAC|dphssrkalstlqsvs* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Tyrosine-protein kinase transmembrane receptor ROR1 TK Ror Q01973 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27976 UBE4B::CHRM3-AS2 ENSG00000130939.20::ENSG00000233355.7 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA UBE4B ENSG00000130939.20 protein_coding + + chr1:10032832-10181239:+ chr1:10171329:+ chr1:10092890-10241297:+ chr1:10231387:+ CHRM3-AS2 ENSG00000233355.7 lncRNA - - chr1:239703381-239770130:- chr1:239714264:- chr1:239866681-239933430:- chr1:239877564:- chr1:10175662,chr1:10175662,chr1:10175656 chr1:239727250,chr1:239727248,chr1:239727263 NA NA chr1:10235720,chr1:10235720,chr1:10235714 chr1:239890550,chr1:239890548,chr1:239890563 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site inversion high none Ubiquitin_elongating_factor_core(94%)| Ufd2P_core(84%)| 1 1 3 93 6 ENST00000672724.1 ENST00000600831.5 downstream downstream duplicates(16) AAAGAACAGTGGGACCAGTTGCCCCGG___GATCAGCAGCAGGCTCGTCAGTCTCAGCTTGCTCAGGATGAGCGTGTGTCCCGCTCTTACCTCGCCCTGGCaAC...CCCGATTGGCTGCAATGCTGAACTTTAATCTTCAGCAACTTTGTGGCCCCAAGTGCCGTGACCTGAAAGTTGAAAACCCTGAGAAATACGGCTTTGAACCAAAGAAGCTGTTGGACCAACTGACGGATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGCCATTGCTGACGACCAG|ATGACGAGCTCCATGAGGGCCAAGGCTCTCCATTCTTGTTCACCACTGCACACTCAGGAGCTCATGGCATGCTGGCTGTGCTAGTTCT___ATCCTCAACAGAATAATTGCTGACAAACTCTCTTGCCCAGAAAATGTCTACTGGAATTATG RLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQ|mtssmrakalhscsplhtqelmacwlc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27977 MEF2C::MEF2C-AS1 ENSG00000081189.17::ENSG00000248309.9 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA MEF2C ENSG00000081189.17 protein_coding - - chr5:88717117-88904257:- chr5:88804598:- chr5:88012934-88200074:- chr5:88100415:- MEF2C-AS1 ENSG00000248309.9 lncRNA + - chr5:88883328-89466398:+ chr5:89260346:- chr5:88179145-88762215:+ chr5:88556163:- chr5:88772461,chr5:88772475 chr5:89282986,chr5:89282997 NA NA chr5:88068278,chr5:88068292 chr5:88578803,chr5:88578814 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none SRF-type_transcription_factor_(DNA-binding_and_dimerisation_domain)(100%)| SRF-TF(100%)| 1 1 2 191 10 ENST00000424173.6 unknown upstream downstream duplicates(42),mismatches(1) CGCTGGACGAAGTAAAGATTATTGTTGTTATTTTTTTTTTCTCTCTCTCTCTCTCTTAAGAAAGGAAAATATCCCAAGGACTAATCTGATCGGGTCTTCCT...AAGGCTTATGAGCTGAGCGTGCTGTGTGACTGTGAGATTGCGCTGATCATCTTCAACAGCACCAACAAGCTGTTCCAGTATGCCAGCACCGACATGGACAAAGTGCTTCTCAAGTACACGGAGTACAACGAGCCGCATGAGAGCCGGACAAACTCAGACATCGTGGAG|AACTGTTGAAATGAATCTTTAAGGCCAACTTCAAAAATTGTATCTGTTATGACTCCGCTGGAATGGGACCTGTGAGTGAGATACTGGTGCCTATGGCATCTCAGG___AAAGTTGAAATTTG KAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE|nc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27978 RRP15::TTLL7 ENSG00000067533.6::ENSG00000137941.17 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA RRP15 ENSG00000067533.6 protein_coding + + chr1:218285293-218337983:+ chr1:218285455:+ chr1:218458635-218511325:+ chr1:218458797:+ TTLL7 ENSG00000137941.17 protein_coding - + chr1:83865024-83999150:- chr1:83937749:+ chr1:84330707-84464833:- chr1:84403432:+ chr1:218291612,chr1:218291613 chr1:83933970,chr1:83933968 NA NA chr1:218464954,chr1:218464955 chr1:84399653,chr1:84399651 NA NA sense antisense out-of-frame CDS/splice-site intron duplication/5'-5' high none none none 1 1 1 109 37 ENST00000366932.4 unknown downstream upstream duplicates(19) AGAAAACCTGAAAAAGACCCCAAAGAAGAAGATGAAAATGGTAACTGGAGCCGTAGCGTCGGTGCTGGAAGACGAGGCCACAGACACTTCTGATAGTGAAG|GGAACCAAGTTCAATCAACTCTTAATGAACTTTCATGGCCTGACAATGCTTCAAATTATTGCTGAGGAAAGACTGTTATAATTGTGGAATGGCATAATCTTACTGAAATATCACTCCAAAACTTAGCAACATCATGTTGATTTGCTTGAAGGAATTCTGTAAACCATTTGATGGAACGTTTGCTGCCTTTGTTCTCAGTTTCATCCCGTTCAAAATGCTCATTATGCTTGTTCACGGAGTAGTTTG ENLKKTPKKKMKMVTGAVASVLEDEATDTSDSE|gnqvqstlnelswpdnasnyc* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27980 ABL2::HIVEP3 ENSG00000143322.22::ENSG00000127124.16 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ABL2 ENSG00000143322.22 protein_coding - - chr1:179099330-179229684:- chr1:179229241:- chr1:179068465-179198819:- chr1:179198376:- HIVEP3 ENSG00000127124.16 protein_coding - - chr1:41506365-42035925:- chr1:41849089:- chr1:41972036-42501596:- chr1:42314760:- chr1:179218547,chr1:179218551,chr1:179218551 chr1:42029755,chr1:42029756,chr1:42029755 NA NA chr1:179187682,chr1:179187686,chr1:179187686 chr1:42495426,chr1:42495427,chr1:42495426 NA NA sense sense out-of-frame CDS/splice-site exon/splice-site deletion high none |Zinc_finger__C2H2_type(100%) |zf-C2H2(100%) 1 1 0 5 130 ENST00000502732.6 ENST00000489103.5 upstream downstream duplicates(12) CTCAGCCCCGCGGGATCCGGGGCAGCAGTGCAGCCAGGCCCTCCGGCCGCAGGCGGGACCCGGCGGGGCGCACCACAGAGACCGGCTTCAATATCTTCACCCAGCATG|TCTGGTGTCTCGGATTTGTTCCTGTGTTGCCCACTCCTGCTGGATCTTGTCCAGTCGAGGGACAAACGTCCTGAAGAATGGGAAGAAAGGAGGTTCTGAAGGCACAGATTCCAATACCATGCCA QPRGIRGSSAARPSGRRRDPAGRTTETGFNIFTQH|vwclgfvpvlptpagscpvegqts* NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Abelson tyrosine-protein kinase 2 TK Abl P42684 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE c-abl oncogene 2, non-receptor tyrosine kinase 1 AML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 27984 ANKRD11::CCND3 ENSG00000167522.17::ENSG00000112576.13 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis arriba TRUE TRUE FALSE NA FALSE NA FALSE NA ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- CCND3 ENSG00000112576.13 protein_coding - + chr6:41934934-42050357:- chr6:42011678:+ chr6:41902672-42018095:- chr6:41979416:+ chr16:89411792,chr16:89411794 chr6:41981161,chr6:41981159 NA NA chr16:89478200,chr16:89478202 chr6:41948899,chr6:41948897 NA NA sense antisense unknown CDS/splice-site intron translocation/5'-5' medium none none none 0 2 0 56 105 ENST00000644139.1 unknown upstream upstream duplicates(4) GAATATATACAGCCCTGCTCTGGGACACACCTCCATTGGATTTAAAAGACAGTCCTCGTCAGCACTGACTTTCAGCTATGGAATCG|AATTGAAGATGCAGAGTACTGAGCCCTCCACCTGCAAATGCATACAGCCATGAACAGATGG...CAGTGGAGGGAGAGGGGTACTCCCAAGCCCTGAAAATCTCAGAGTAAGAGGCCACCGACGACAGCGCTCACCGGTGCTGAGCTCCCTTCTACAGAAACCTGCAAAGACTCAGATCGAGGAGGAAATACACCAGGAAAATGTCACAGGATCATCTCGAG unknown NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 27998 NDC1::GLIS1 ENSG00000058804.12::ENSG00000174332.6 OCUM1 SRR8615225 SRR8670736 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1 FALSE NA FALSE NA NDC1 ENSG00000058804.12 protein_coding - - chr1:53765478-53838463:- chr1:53787158:- chr1:54231151-54304136:- chr1:54252831:- GLIS1 ENSG00000174332.6 protein_coding - - chr1:53506237-53739164:- chr1:53510027:- chr1:53971910-54204837:- chr1:53975700:- chr1:53775822,chr1:53775826,chr1:53775824 chr1:53510137,chr1:53510136,chr1:53510136 NA NA chr1:54241495,chr1:54241499,chr1:54241497 chr1:53975810,chr1:53975809,chr1:53975809 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ndc1_Nup|20-667|3.3e-131^GP41|60-100|8.6e-05 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];NEIGHBORS[27354] 6 8 6 7.75 ONLY_REF_SPLICE YES_LDAS 0.1645 GT 1.9656 AG 1.5058 ENST00000371429.4 1-1800 ENST00000628545.2 1884-2388 chr1|-|[2]53787158-53787258[1]|[0]53789133-53789196[0]|[2]53793229-53793279[0]|[2]53796689-53796804[1]|[0]53796899-53797144[1]|[0]53800693-53800848[1]|[0]53803928-53804009[0]|[2]53806425-53806517[0]|[2]53807656-53807791[2]|[1]53809695-53809746[1]|[0]53818971-53819079[0]|[2]53825798-53825936[2]|[1]53827999-53828173[1]|[0]53832490-53832591[1]|[0]53835500-53835620[0]|[2]53838205-53838261[0]<==>chr1|-|[2]53506619-53506776[1]|[0]53509120-53509287[1]|[0]53509849-53510027[2] atggccacggccgtgagccggccctgcgccggcaggtcgcgggacatactgtggcgcgttttgggctggaggatagttgcaagtattgtttggtcagtgctatttctacccatctgcaccacagtatttataattttcagcaggattgatttgtttcatcctatacagtggctgtctgattctttcagtgacctgtatagttcctatgtaatcttttacttcctgctgctgtcagtggtaataataataataagtattttcaatgtggagttctatgcagttgtgccttctattccttgctccagactagctctgatagggaagatcattcatcctcagcaactcatgcactcatttattcatgctgcaatgggaatggtgatggcctggtgtgctgcagtgataacccagggccagtacagctttcttgtggttccctgcactggtactaacagctttggtagccctgctgcgcaaacctgcttaaatgaatatcatctttttttcctactgactggagcatttatgggctatagctatagcctcctgtattttgttaacaacatgaactatcttccatttcccatcatacagcaatacaagttcttgcgttttaggagatctctgctcttattagttaaacacagttgtgtggaatcactgttcctggttagaaatttctgcattttatattattttcttggctatattcccaaagcttggattagcactgctatgaaccttcacatagatgagcaggttcataggccacttgacacagtgagtggcctcttaaatctctcgttactctaccatgtctggctgtgtggtgtctttctcctgacgacttggtatgtctcatggatactcttcaaaatctatgccacagaggctcatgtgtttcctgttcaaccaccatttgcagaagggtcagatgagtgccttccaaaagtgttaaatagcaatcctccccccatcataaagtatttagccttgcaggacctgatgttgctttctcaatattctccttcacgaagacaagaagttttcagcctcagccaaccaggtggacatccccacaattggacagccatttcaagggagtgtttgaatcttttaaatggtatgactcagaaactgattctctatcaagaagctgctgctacgaatgggagagtgtcttcatcttacccagtggaacctaagaaattaaattctccagaagaaactgcttttcagacaccaaaatctagccagatgcctcggccttcagtgccaccattagttaaaacatcactgttttcttcaaaattatctacacctgatgttgtgagcccatttgggaccccatttggctctagtgtaatgaatcggatggctggaatttttgatgtaaacacctgctatgggtcaccgcaaagtcctcagctaataagaagggggccaagattgtggacatcagcttctgatcagcaaatgactgaattttctaatccttctccatctacctctattagtgctgagggtaagacaatgagacaacccagtgtgatttattcatggattcagaataaacgtgaacagattaagaatttcttgtcaaaacgggtgctgataatgtattttttcagtaagcacccagaggcctccattcaggctgttttttcagatgcccaaatgcatatttgggcattagaaggtctgtcgcacttagtagcagcatcatttacagaggatagatttggagttgtccagacgacactaccagctatccttaatactttgttgacactgcaagagGTTGGGGCCCGGCCTCCTCTCACCAATAGTCAGCCCCCTGAAGGGGCTGGGGCCACCGCCGCTGCCCCCATCCTCTCAGAGCCATTCTCCGGGGGGCCAGCCCTTCCCCACACTCCCCAGCAAGCCGTCCTACCCACCCTTCCAGAGCCCTCCACCCCCGCCTCTGCCCAGCCCACAAGGTTACCAGGGCAGTTTCCACTCCATCCAGAGTTGCTTCCCCTATGGCGACTGCTACCGGATGGCTGAACCAGCAGCCGGTGGGGACGGACTGGTCGGGGAGACCCACGGTTTCAACCCCCTGCGGCCCAATGGCTACCACAGCCTCAGCACGCCCTTGCCTGCCACAGGCTATGAGGCCCTGGCTGAGGCCTCATGCCCCACAGCGCTGCCACAGCAGCCATCTGAAGATGTGGTGTCCAGCGGCCCCGAGGACTGTGGCTTCTTCCCCAATGGAGCCTTTGACCACTGCCTGGGCCACATCCCCTCCATCTACACAGACACCTGA MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSRLALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEVGARPPLTNSQPPEGAGATAAAPILSEPFSGGPALPHTPQQAVLPTLPEPSTPASAQPTRLPGQFPLHPELLPLWRLLPDG*TSSRWGRTGRGDPRFQPPAAQWLPQPQHALACHRL*GPG*GLMPHSAATAAI*RCGVQRPRGLWLLPQWSL*PLPGPHPLHLHRHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28000 DDX23::LINC02406 ENSG00000174243.11::ENSG00000258144.2 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48845574:- chr12:49223539-49246625:- chr12:49239357:- LINC02406 ENSG00000258144.2 lncRNA - - chr12:39087347-39145482:- chr12:39092682:- chr12:39481149-39539284:- chr12:39486484:- chr12:48844827,chr12:48844835 chr12:39139959,chr12:39139964 NA NA chr12:49238610,chr12:49238618 chr12:39533761,chr12:39533766 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 478 256 478 256 ONLY_REF_SPLICE YES_LDAS 7.9339 GT 1.8295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28001 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 3 TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29115840:- chr17:27398140-27507416:- chr17:27442858:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PHD|83-126|3.8e-14 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.12Mb] 435 496 435 313.17 ONLY_REF_SPLICE YES_LDAS 8.0871 GT 1.8295 AG 1.8892 ENST00000584685.1 1-320 ENST00000527372.7 2051-6165 chr17|-|[1]28950065-28950246[0]|[2]28951467-28951604[0]<==>chr17|-|[2]29074770-29074914[2]|[1]29082316-29082438[2]|[1]29085604-29085648[2]|[1]29086438-29086577[0]|[2]29086936-29087121[0]|[2]29089961-29090098[0]|[2]29090532-29090615[0]|[2]29090810-29090926[0]|[2]29092343-29092456[0]|[2]29092855-29093001[0]|[2]29093323-29093427[0]|[2]29093980-29094090[0]|[2]29094650-29094850[0]|[2]29094936-29095059[2]|[1]29096761-29096915[0]|[2]29097223-29097350[1]|[0]29097788-29097899[0]|[2]29098105-29098224[0]|[2]29098356-29098445[0]|[2]29098826-29098969[0]|[2]29099634-29099762[0]|[2]29103599-29103664[0]|[2]29107080-29107189[1]|[0]29109858-29110101[0]|[2]29110436-29110622[2]|[1]29111424-29111583[1]|[0]29111722-29111863[0]|[2]29114011-29114097[0]|[2]29114907-29115099[2]|[1]29115351-29115441[1]|[0]29115664-29115840[1] atgccagcgcggctgcgcgctggggggtactccctcaccgcggctgcgcgggagccaggccgccggctgtcactgcggttgcgcgcggcgagcgccgatcccggggcgcctgcgcgggtggctttgcgggcgctcgcgcaaatccaagctctgctggctccccccaagacggacgaggcagaaaagcgcagtcggaagcctgagaaggagccccggagaagcggcagggccaccaaccacgacagctgcgatagctgcaaggaaggtggagatctcctgtgctgcgaccactgcccggctgccttccacctccagtgctgCTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAGGCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCACCCTTCTCGTCTCCCTGGTGAATAGGGCTCTCAAGTCCAGCCAGCACTCACTCTGCTCCATGATGATTGTCGACACCCCGGGCTTCCAGAACCCTGAGCAGGGTGGGTCAGCCCGCGGAGCCTCCTTTGAGGAGCTGTGCCACAACTACACCCAAGACCGGCTGCAGAGGCTCTTCCACGAGCGCACCTTCGTGCAGGAGTTGGAAAGATACAAGGAGGAGAACATCGAGCTGGCGTTTGACGACTTGGAACCCCCGACGGATGACTCTGTGGCTGCTGTGGACCAGGCCTCCCATCAGTCCCTGGTCCGCTCGCTGGCCCGCACAGACGAGGCGAGGGGCCTGCTCTGGCTATTGGAAGAGGAGGCTCTGGTGCCAGGGGCCAGTGAGGACACCCTCCTGGAGCGCCTTTTCTCCTATTATGGCCCCCAGGAAGGTGACAAAAAAGGCCAAAGCCCCCTTCTGCACAGCAGCAAACCACACCACTTTCTCCTGGGCCACAGCCATGGCACCAACTGGGTAGAGTACAATGTGACTGGCTGGCTGAACTACACCAAGCAGAACCCAGCCACCCAGAATGCCCCCCGGCTCCTGCAGGACTCCCAGAAAAAAATCATCAGCAACCTGTTTCTGGGCCGCGCAGGCAGTGCCACGGTGCTCTCTGGCTCCATCGCGGGCCTGGAGGGCGGCTCGCAGCTGGCACTGCGCCGGGCCACCAGCATGCGGAAAACCTTTACCACAGGCATGGCGGCTGTCAAAAAGAAGTCACTGTGCATCCAGATGAAGCTACAGGTGGACGCCCTCATCGACACCATCAAGAAGTCAAAGCTGCATTTTGTGCACTGCTTCCTGCCTGTAGCTGAGGGCTGGGCTGGGGAGCCCCGTTCCGCCTCCTCCCGCCGAGTCAGCAGCAGCAGTGAGCTGGACCTGCCCTCGGGAGACCACTGCGAGGCTGGGCTCCTGCAGCTCGACGTGCCCCTGCTCCGCACCCAGCTCCGCGGCTCCCGCCTGCTCGATGCCATGCGCATGTACCGCCAAGGTTACCCTGACCACATGGTGTTTTCCGAGTTCCGCCGCCGCTTTGATGTCCTGGCCCCGCACCTGACCAAGAAACACGGGCGTAACTACATCGTGGTGGATGAAAGGCGGGCAGTGGAGGAGCTGCTGGAGTGCTTGGATCTGGAGAAGAGCAGCTGCTGCATGGGCCTGAGCCGGGTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACCAGCAGGAACCTAACCCTGTTCCAAGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAGATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGCCCCTCATCGAAGTACAGCTGTCAGAGGAGCAGATCCGGAACAAAGACGAGGAGATCCAGCAGCTGCGGAGCAAGCTCGAGAAGGCGGAGAAGGAGAGGAACGAGCTGCGGCTCAACAGTGACCGGCTGGAGAGCCGGATCTCAGAGCTGACATCGGAGCTGACAGATGAGCGTAACACAGGAGAGTCCGCCTCCCAGCTGCTGGACGCGGAGACAGCAGAGAGGCTCCGGGCTGAGAAGGAGATGAAGGAACTGCAGACCCAGTACGATGCACTGAAGAAGCAGATGGAGGTTATGGAAATGGAGGTGATGGAGGCCCGTCTCATCCGGGCAGCGGAGATCAACGGGGAAGTGGATGATGATGATGCAGGTGGCGAGTGGCGGCTGAAGTATGAGCGGGCTGTGCGGGAGGTGGACTTCACCAAGAAACGGCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGAACGGCGGCTCGGGGACCTGCAGGCAGATAGTGAGGAGAGTCAGCGGGCTCTGCAGCAGCTCAAGAAGAAGTGCCAGCGACTGACGGCTGAGCTGCAAGACACCAAGCTGCACCTGGAGGGCCAGCAGGTCCGCAACCACGAACTGGAGAAGAAGCAGAGGAGGTTTGACAGTGAGCTCTCGCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAGAAGGACATGCTCCTCGCTGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGACATTGCAGGGTTCACCCAGAAGGTTGTGTCTCTAGAGGCAGAGCTCCAGGACATTTCTTCCCAAGAGTCCAAGGATGAGGCTTCTCTGGCCAAGGTCAAGAAACAGCTCCGGGACCTGGAGGCCAAAGTCAAGGATCAGGAAGAAGAGCTGGATGAGCAGGCAGGGACCATCCAGATGCTGGAACAGGCCAAGCTGCGTCTGGAGATGGAGATGGAGCGGATGAGACAGACCCATTCTAAGGAGATGGAGAGTCGGGATGAGGAGGTGGAGGAGGCCCGGCAGTCGTGTCAGAAGAAGTTAAAACAGATGGAGGTGCAGCTAGAGGAAGAGTATGAGGACAAGCAGAAGGTTCTGCGAGAGAAGCGGGAGCTGGAGGGCAAGCTCGCCACCCTCAGCGACCAGGTGAACCGGCGGGACTTTGAGTCAGAGAAGCGGCTGCGGAAGGACCTGAAGCGCACCAAGGCCCTGCTGGCAGATGCCCAGCTCATGCTGGACCACCTGAAGAACAGTGCTCCCAGCAAGCGAGAGATTGCCCAGCTCAAGAACCAGCTGGAGGAGTCAGAGTTCACCTGTGCGGCAGCCGTGAAAGCACGGAAAGCAATGGAGGTGGAGATCGAAGACCTGCACCTGCAGATTGATGACATCGCCAAAGCCAAGACAGCGCTGGAGGAGCAGCTGAGCCGCCTTCAGCGTGAGAAGAATGAGATCCAGAACCGGCTGGAGGAAGATCAGGAAGACATGAACGAATTGATGAAGAAGCACAAGGCTGCCGTGGCTCAGGCTTCCCGGGACCTGGCTCAGATAAATGATCTCCAAGCTCAGCTAGAAGAAGCCAACAAAGAGAAGCAGGAGCTGCAGGAGAAGCTACAAGCCCTCCAGAGCCAGGTGGAGTTCCTGGAGCAGTCCATGGTGGACAAGTCCCTGGTGAGCAGGCAGGAAGCTAAGATACGGGAGCTGGAGACACGCCTGGAGTTTGAAAGGACGCAAGTGAAACGGCTGGAGAGCCTGGCTAGCCGTCTCAAGGAAAACATGGAGAAGCTGACTGAGGAGCGGGATCAGCGCATTGCAGCCGAGAACCGGGAGAAGGAACAGAACAAGCGGCTACAGAGGCAGCTCCGGGACACCAAGGAGGAGATGGGCGAGCTTGCCAGGAAGGAGGCCGAGGCGAGCCGCAAGAAGCACGAACTGGAGATGGATCTAGAAAGCCTGGAGGCTGCTAACCAGAGCCTGCAGGCTGACCTAAAGTTGGCATTCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGATGAGATGGAGAGTGATGAGAATGAGGACCTCATCAACAGTTTGCAGGACATGGTGACAAAGTATCAGAAAAGAAAGAATAAACTTGAGGGAGACTCTGATGTGGACTCGGAGCTGGAGGACCGTGTTGACGGGGTCAAGTCCTGGTTGTCAAAAAACAAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGATCGGTCAGATGATGAGCACGACCCTCTCGACAACACCTCCAGACCGCGATACTCCCACAGTTATCTGAGTGACAGCGACACAGAGGCCAAGCTGACGGAGACTAACGCATAG MPARLRAGGYSLTAAAREPGRRLSLRLRAASADPGAPARVALRALAQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCWAQAVCPP*VGPEGCVPTGLQPGGAVLSHLQAPAQGWHPAALHLLPPGPRGEWPGRWDRPETECTGVP*GHGGRPLQRALHPSRLPGE*GSQVQPALTLLHDDCRHPGLPEP*AGWVSPRSLL*GAVPQLHPRPAAEALPRAHLRAGVGKIQGGEHRAGV*RLGTPDG*LCGCCGPGLPSVPGPLAGPHRRGEGPALAIGRGGSGARGQ*GHPPGAPFLLLWPPGR*QKRPKPPSAQQQTTPLSPGPQPWHQLGRVQCDWLAELHQAEPSHPECPPAPAGLPEKNHQQPVSGPRRQCHGALWLHRGPGGRLAAGTAPGHQHAENLYHRHGGCQKEVTVHPDEATGGRPHRHHQEVKAAFCALLPACS*GLGWGAPFRLLPPSQQQQ*AGPALGRPLRGWAPAARRAPAPHPAPRLPPARCHAHVPPRLP*PHGVFRVPPPL*CPGPAPDQETRA*LHRGG*KAGSGGAAGVLGSGEEQLLHGPEPGVLPGGHLGTAGGAAG*TNQQEPNPVPSSLQGLPGPPALQEEKDPGPGHSLCTEEHQEEQRGEGLALVEAFYHSEAPHRSTAVRGADPEQRRGDPAAAEQAREGGEGEERAAAQQ*PAGEPDLRADIGADR*A*HRRVRLPAAGRGDSREAPG*EGDEGTADPVRCTEEADGGYGNGGDGGPSHPGSGDQRGSG***CRWRVAAEV*AGCAGGGLHQETAPAGV*GQAGGGAAEQEAAGTAARGPAGR**GESAGSAAAQEEVPATDG*AARHQAAPGGPAGPQPRTGEEAEEV*Q*ALAGA*GGPAGEAAAGEAAAGEGHAPR*GFQPEAATRGKRHGHCRVHPEGCVSRGRAPGHFFPRVQG*GFSGQGQETAPGPGGQSQGSGRRAG*AGRDHPDAGTGQAASGDGDGADETDPF*GDGESG*GGGGGPAVVSEEVKTDGGAARGRV*GQAEGSAREAGAGGQARHPQRPGEPAGL*VREAAAEGPEAHQGPAGRCPAHAGPPEEQCSQQARDCPAQEPAGGVRVHLCGSRESTESNGGGDRRPAPAD**HRQSQDSAGGAAEPPSA*EE*DPEPAGGRSGRHERIDEEAQGCRGSGFPGPGSDK*SPSSARRSQQREAGAAGEATSPPEPGGVPGAVHGGQVPGEQAGS*DTGAGDTPGV*KDASETAGEPG*PSQGKHGEAD*GAGSAHCSREPGEGTEQAATEAAPGHQGGDGRACQEGGRGEPQEARTGDGSRKPGGC*PEPAG*PKVGIQAHRGPAGCH*G*DGE**E*GPHQQFAGHGDKVSEKKE*T*GRL*CGLGAGGPC*RGQVLVVKKQGTFQGSF**WQLKEFQPHQLLEVPCP*SVR**ARPSRQHLQTAILPQLSE*QRHRGQADGD*RI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28002 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29116455:- chr17:27398140-27507416:- chr17:27443473:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PHD|83-126|3.8e-14 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.12Mb] 242 504 242 187.98 ONLY_REF_SPLICE NO_LDAS 4.6477 GT 1.8295 AG 1.9086 ENST00000584685.1 1-320 ENST00000527372.7 2039-6165 chr17|-|[1]28950065-28950246[0]|[2]28951467-28951604[0]<==>chr17|-|[2]29074770-29074914[2]|[1]29082316-29082438[2]|[1]29085604-29085648[2]|[1]29086438-29086577[0]|[2]29086936-29087121[0]|[2]29089961-29090098[0]|[2]29090532-29090615[0]|[2]29090810-29090926[0]|[2]29092343-29092456[0]|[2]29092855-29093001[0]|[2]29093323-29093427[0]|[2]29093980-29094090[0]|[2]29094650-29094850[0]|[2]29094936-29095059[2]|[1]29096761-29096915[0]|[2]29097223-29097350[1]|[0]29097788-29097899[0]|[2]29098105-29098224[0]|[2]29098356-29098445[0]|[2]29098826-29098969[0]|[2]29099634-29099762[0]|[2]29103599-29103664[0]|[2]29107080-29107189[1]|[0]29109858-29110101[0]|[2]29110436-29110622[2]|[1]29111424-29111583[1]|[0]29111722-29111863[0]|[2]29114011-29114097[0]|[2]29114907-29115099[2]|[1]29115351-29115441[1]|[0]29115664-29115840[1]|[0]29116444-29116455[1] atgccagcgcggctgcgcgctggggggtactccctcaccgcggctgcgcgggagccaggccgccggctgtcactgcggttgcgcgcggcgagcgccgatcccggggcgcctgcgcgggtggctttgcgggcgctcgcgcaaatccaagctctgctggctccccccaagacggacgaggcagaaaagcgcagtcggaagcctgagaaggagccccggagaagcggcagggccaccaaccacgacagctgcgatagctgcaaggaaggtggagatctcctgtgctgcgaccactgcccggctgccttccacctccagtgctgAAGCTGCTGAAGCTGGGCGCAAGCAGTTTGCCCGCCATGAGTGGGCCCAGAAGGCTGCGTACCTACTGGGCTGCAGCCTGGAGGAGCTGTCCTCAGCCATCTTCAAGCACCAGCACAAGGGTGGCACCCTGCAGCGCTCCACCTCCTTCCGCCAGGGCCCCGAGGAGAGTGGCCTGGGAGATGGGACAGGCCCGAAACTGAGTGCACTGGAGTGCCTTGAGGGCATGGCGGCCGGCCTCTACAGCGAGCTCTTCACCCTTCTCGTCTCCCTGGTGAATAGGGCTCTCAAGTCCAGCCAGCACTCACTCTGCTCCATGATGATTGTCGACACCCCGGGCTTCCAGAACCCTGAGCAGGGTGGGTCAGCCCGCGGAGCCTCCTTTGAGGAGCTGTGCCACAACTACACCCAAGACCGGCTGCAGAGGCTCTTCCACGAGCGCACCTTCGTGCAGGAGTTGGAAAGATACAAGGAGGAGAACATCGAGCTGGCGTTTGACGACTTGGAACCCCCGACGGATGACTCTGTGGCTGCTGTGGACCAGGCCTCCCATCAGTCCCTGGTCCGCTCGCTGGCCCGCACAGACGAGGCGAGGGGCCTGCTCTGGCTATTGGAAGAGGAGGCTCTGGTGCCAGGGGCCAGTGAGGACACCCTCCTGGAGCGCCTTTTCTCCTATTATGGCCCCCAGGAAGGTGACAAAAAAGGCCAAAGCCCCCTTCTGCACAGCAGCAAACCACACCACTTTCTCCTGGGCCACAGCCATGGCACCAACTGGGTAGAGTACAATGTGACTGGCTGGCTGAACTACACCAAGCAGAACCCAGCCACCCAGAATGCCCCCCGGCTCCTGCAGGACTCCCAGAAAAAAATCATCAGCAACCTGTTTCTGGGCCGCGCAGGCAGTGCCACGGTGCTCTCTGGCTCCATCGCGGGCCTGGAGGGCGGCTCGCAGCTGGCACTGCGCCGGGCCACCAGCATGCGGAAAACCTTTACCACAGGCATGGCGGCTGTCAAAAAGAAGTCACTGTGCATCCAGATGAAGCTACAGGTGGACGCCCTCATCGACACCATCAAGAAGTCAAAGCTGCATTTTGTGCACTGCTTCCTGCCTGTAGCTGAGGGCTGGGCTGGGGAGCCCCGTTCCGCCTCCTCCCGCCGAGTCAGCAGCAGCAGTGAGCTGGACCTGCCCTCGGGAGACCACTGCGAGGCTGGGCTCCTGCAGCTCGACGTGCCCCTGCTCCGCACCCAGCTCCGCGGCTCCCGCCTGCTCGATGCCATGCGCATGTACCGCCAAGGTTACCCTGACCACATGGTGTTTTCCGAGTTCCGCCGCCGCTTTGATGTCCTGGCCCCGCACCTGACCAAGAAACACGGGCGTAACTACATCGTGGTGGATGAAAGGCGGGCAGTGGAGGAGCTGCTGGAGTGCTTGGATCTGGAGAAGAGCAGCTGCTGCATGGGCCTGAGCCGGGTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACCAGCAGGAACCTAACCCTGTTCCAAGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAGATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGCCCCTCATCGAAGTACAGCTGTCAGAGGAGCAGATCCGGAACAAAGACGAGGAGATCCAGCAGCTGCGGAGCAAGCTCGAGAAGGCGGAGAAGGAGAGGAACGAGCTGCGGCTCAACAGTGACCGGCTGGAGAGCCGGATCTCAGAGCTGACATCGGAGCTGACAGATGAGCGTAACACAGGAGAGTCCGCCTCCCAGCTGCTGGACGCGGAGACAGCAGAGAGGCTCCGGGCTGAGAAGGAGATGAAGGAACTGCAGACCCAGTACGATGCACTGAAGAAGCAGATGGAGGTTATGGAAATGGAGGTGATGGAGGCCCGTCTCATCCGGGCAGCGGAGATCAACGGGGAAGTGGATGATGATGATGCAGGTGGCGAGTGGCGGCTGAAGTATGAGCGGGCTGTGCGGGAGGTGGACTTCACCAAGAAACGGCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGAACGGCGGCTCGGGGACCTGCAGGCAGATAGTGAGGAGAGTCAGCGGGCTCTGCAGCAGCTCAAGAAGAAGTGCCAGCGACTGACGGCTGAGCTGCAAGACACCAAGCTGCACCTGGAGGGCCAGCAGGTCCGCAACCACGAACTGGAGAAGAAGCAGAGGAGGTTTGACAGTGAGCTCTCGCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAGAAGGACATGCTCCTCGCTGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGACATTGCAGGGTTCACCCAGAAGGTTGTGTCTCTAGAGGCAGAGCTCCAGGACATTTCTTCCCAAGAGTCCAAGGATGAGGCTTCTCTGGCCAAGGTCAAGAAACAGCTCCGGGACCTGGAGGCCAAAGTCAAGGATCAGGAAGAAGAGCTGGATGAGCAGGCAGGGACCATCCAGATGCTGGAACAGGCCAAGCTGCGTCTGGAGATGGAGATGGAGCGGATGAGACAGACCCATTCTAAGGAGATGGAGAGTCGGGATGAGGAGGTGGAGGAGGCCCGGCAGTCGTGTCAGAAGAAGTTAAAACAGATGGAGGTGCAGCTAGAGGAAGAGTATGAGGACAAGCAGAAGGTTCTGCGAGAGAAGCGGGAGCTGGAGGGCAAGCTCGCCACCCTCAGCGACCAGGTGAACCGGCGGGACTTTGAGTCAGAGAAGCGGCTGCGGAAGGACCTGAAGCGCACCAAGGCCCTGCTGGCAGATGCCCAGCTCATGCTGGACCACCTGAAGAACAGTGCTCCCAGCAAGCGAGAGATTGCCCAGCTCAAGAACCAGCTGGAGGAGTCAGAGTTCACCTGTGCGGCAGCCGTGAAAGCACGGAAAGCAATGGAGGTGGAGATCGAAGACCTGCACCTGCAGATTGATGACATCGCCAAAGCCAAGACAGCGCTGGAGGAGCAGCTGAGCCGCCTTCAGCGTGAGAAGAATGAGATCCAGAACCGGCTGGAGGAAGATCAGGAAGACATGAACGAATTGATGAAGAAGCACAAGGCTGCCGTGGCTCAGGCTTCCCGGGACCTGGCTCAGATAAATGATCTCCAAGCTCAGCTAGAAGAAGCCAACAAAGAGAAGCAGGAGCTGCAGGAGAAGCTACAAGCCCTCCAGAGCCAGGTGGAGTTCCTGGAGCAGTCCATGGTGGACAAGTCCCTGGTGAGCAGGCAGGAAGCTAAGATACGGGAGCTGGAGACACGCCTGGAGTTTGAAAGGACGCAAGTGAAACGGCTGGAGAGCCTGGCTAGCCGTCTCAAGGAAAACATGGAGAAGCTGACTGAGGAGCGGGATCAGCGCATTGCAGCCGAGAACCGGGAGAAGGAACAGAACAAGCGGCTACAGAGGCAGCTCCGGGACACCAAGGAGGAGATGGGCGAGCTTGCCAGGAAGGAGGCCGAGGCGAGCCGCAAGAAGCACGAACTGGAGATGGATCTAGAAAGCCTGGAGGCTGCTAACCAGAGCCTGCAGGCTGACCTAAAGTTGGCATTCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGATGAGATGGAGAGTGATGAGAATGAGGACCTCATCAACAGTTTGCAGGACATGGTGACAAAGTATCAGAAAAGAAAGAATAAACTTGAGGGAGACTCTGATGTGGACTCGGAGCTGGAGGACCGTGTTGACGGGGTCAAGTCCTGGTTGTCAAAAAACAAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGATCGGTCAGATGATGAGCACGACCCTCTCGACAACACCTCCAGACCGCGATACTCCCACAGTTATCTGAGTGACAGCGACACAGAGGCCAAGCTGACGGAGACTAACGCATAG MPARLRAGGYSLTAAAREPGRRLSLRLRAASADPGAPARVALRALAQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQC*SC*SWAQAVCPP*VGPEGCVPTGLQPGGAVLSHLQAPAQGWHPAALHLLPPGPRGEWPGRWDRPETECTGVP*GHGGRPLQRALHPSRLPGE*GSQVQPALTLLHDDCRHPGLPEP*AGWVSPRSLL*GAVPQLHPRPAAEALPRAHLRAGVGKIQGGEHRAGV*RLGTPDG*LCGCCGPGLPSVPGPLAGPHRRGEGPALAIGRGGSGARGQ*GHPPGAPFLLLWPPGR*QKRPKPPSAQQQTTPLSPGPQPWHQLGRVQCDWLAELHQAEPSHPECPPAPAGLPEKNHQQPVSGPRRQCHGALWLHRGPGGRLAAGTAPGHQHAENLYHRHGGCQKEVTVHPDEATGGRPHRHHQEVKAAFCALLPACS*GLGWGAPFRLLPPSQQQQ*AGPALGRPLRGWAPAARRAPAPHPAPRLPPARCHAHVPPRLP*PHGVFRVPPPL*CPGPAPDQETRA*LHRGG*KAGSGGAAGVLGSGEEQLLHGPEPGVLPGGHLGTAGGAAG*TNQQEPNPVPSSLQGLPGPPALQEEKDPGPGHSLCTEEHQEEQRGEGLALVEAFYHSEAPHRSTAVRGADPEQRRGDPAAAEQAREGGEGEERAAAQQ*PAGEPDLRADIGADR*A*HRRVRLPAAGRGDSREAPG*EGDEGTADPVRCTEEADGGYGNGGDGGPSHPGSGDQRGSG***CRWRVAAEV*AGCAGGGLHQETAPAGV*GQAGGGAAEQEAAGTAARGPAGR**GESAGSAAAQEEVPATDG*AARHQAAPGGPAGPQPRTGEEAEEV*Q*ALAGA*GGPAGEAAAGEAAAGEGHAPR*GFQPEAATRGKRHGHCRVHPEGCVSRGRAPGHFFPRVQG*GFSGQGQETAPGPGGQSQGSGRRAG*AGRDHPDAGTGQAASGDGDGADETDPF*GDGESG*GGGGGPAVVSEEVKTDGGAARGRV*GQAEGSAREAGAGGQARHPQRPGEPAGL*VREAAAEGPEAHQGPAGRCPAHAGPPEEQCSQQARDCPAQEPAGGVRVHLCGSRESTESNGGGDRRPAPAD**HRQSQDSAGGAAEPPSA*EE*DPEPAGGRSGRHERIDEEAQGCRGSGFPGPGSDK*SPSSARRSQQREAGAAGEATSPPEPGGVPGAVHGGQVPGEQAGS*DTGAGDTPGV*KDASETAGEPG*PSQGKHGEAD*GAGSAHCSREPGEGTEQAATEAAPGHQGGDGRACQEGGRGEPQEARTGDGSRKPGGC*PEPAG*PKVGIQAHRGPAGCH*G*DGE**E*GPHQQFAGHGDKVSEKKE*T*GRL*CGLGAGGPC*RGQVLVVKKQGTFQGSF**WQLKEFQPHQLLEVPCP*SVR**ARPSRQHLQTAILPQLSE*QRHRGQADGD*RI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28003 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 5 TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44741401:+ chr17:42785976-42829632:+ chr17:42818769:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HLH|331-381|2.3e-18 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr17] 200 128 200 91.28 INCL_NON_REF_SPLICE YES_LDAS 3.1485 GT 1.5656 AG 1.9656 ENST00000361204.9 1-2208 ENST00000315005.8 779-1848 chr22|+|[0]41833271-41833358[0]|[1]41866831-41867280[0]|[1]41868611-41868792[2]|[0]41870889-41871035[2]|[0]41873798-41874019[2]|[0]41875337-41875451[0]|[1]41875543-41875724[2]|[0]41877229-41877421[0]|[1]41877942-41878123[2]|[0]41880716-41880992[0]|[1]41884842-41885011[2]<==>chr17|+|[1]44741401-44741452[1]|[2]44747083-44747191[2]|[0]44747391-44747515[1]|[2]44748341-44748465[0]|[1]44750595-44751253[2] atggacgacagcggcgagctgggtggtctggagaccatggagaccctcacggagctgggcgacgagctgaccctgggagacatcgacgagatgctgcaatttgtcagtaatcaagtgggagagttccctgacttgttttcagaacagctgtgtagctcctttcctggcagtggtggtagtggtagcagcagcggcagcagtggcagcagcagcagcagcagcaatggcaggggcagcagcagcggagctgtggacccttcagtgcaacggtcattcacccaggtcacattaccttccttctctccctcggcggcctccccacaggctccaactctgcaagtcaaggtttctcccacctcagttcccaccacacccagggcaactcctattcttcagccccgcccccagccccagcctcaacctcaaactcagctgcaacaacagacggtaatgatcacgccaacattcagcaccactccgcagacgaggatcatccagcagcctttgatataccagaatgcagctactagctttcaagtccttcagcctcaagtccaaagcctggtgacatcctcccaggtacagccggtcaccattcagcagcaggtgcagacagtacaggcccagcgggtgctgacacaaacggccaatggcacgctgcagacccttgccccggctacggtgcagacagttgctgcgccacaggtgcagcaggtcccggtcctggtccagcctcagatcatcaagacagattcccttgttttgaccacactgaagacagatggcagccctgttatggctgcggtccagaacccggccctcaccgccctcaccacccctatccagacggctgcccttcaagtaccaaccctggtgggcagcagtgggaccattctgaccacaatgcctgtaatgatggggcaagagaaagtgcccattaagcaggtacctgggggagtcaagcagcttgagccccccaaagaaggagaaaggcggacaacccataatatcattgagaaacgatatcgctcctccatcaatgacaaaatcatcgaattgaaagacctggtcatggggacagacgccaagatgcacaagtctggcgttctgaggaaggccattgattacatcaaatacttgcagcaggtcaatcataaactgcgccaggagaacatggtgctgaagctggcaaatcaaaagaacaagcttctaaagggcatcgacctaggcagtctggtggacaatgaggtggacctgaagatcgaggactttaatcagaatgtccttctgatgtcccccccagcctctgactcagggtcccaggctggcttctctccctactccattgactctgagccaggaagccctctattggatgatgcaaaggtcaaagatgagccagactctcctcctgtggcgctgggcatggtagaccgctcacggattcttctgtgtgtcctcaccttcctgtgcctctcctttaaccccctgacttccctgctgcagtggggaggggcccacgactctgaccagcacccacactcaggctctggccgcagtgtcctgtcattcgagtcaggttctgggggctggtttgactggatgatgcctactcttctcttatggctggtaaatggtgtgattgtcctgagcgtctttgtgaagctgctggttcatggggagccagtgatccggccacactcgcgctcctcggtcaccttctggaggcaccggaaacaggcagatctggatctcgccagaggagattttgcagctgctgccggcaacctacaaacctgcctggcagttttgggccgggcactgcccacctcccgcctggacctggcctgcagcctctcctggaacgtgatccgctacagcctgcagaagctacgcctggtgcgctggctgctcaagaaagtcttccagtgccggcgggccacgccagccactgaggcaggctttgaagacgaagctaagaccagcgcccgggatgcggctctggcctatcaccggctgcaccagctgcacatcacagggaagcttcctgcaggatccgcctgttccgatgtacacatggcgttgtgtgccgtgaacctggctgaatgtgcagaggagaagatcccaccgagcacactggttgagatccatctgactgctgccatggggctcaagacccggtgtggaggcaagctgggcttcctggccATGCAAGTCCCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACCAGAGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGGAGCTCCATGTGCATCTTCAGAGTGCCCAGCACCGGAGCTTTGCCCTGGAAGCCCATCTATATGCAGAAGTGGACAGGATCATTGCTCAGCTCAGCCACAGCTTTGCAGACATCCCTTTCCAGGCTGGCCTCCCCAGGTGGTCAGGTTCCCCAGCTTCTGATTGTGACCCTCTCTGTCCTGAGACTCTGCACCCCCATCAGCCCTCCCATCCCAGGGCAGCATCTCCCAGGATAAGGAAAGAAGACAGCTGCCAGGCATCAGTGACCCAAGGCAGGGCTGCGGGCCAGCAGCGATGGACAGAATCACTAGATGGTGTGATGGGACCTCCTGCAAGTCACACATGTGTGAGTGCCACAACCCTCCTGCCGGCCTTGCCCAAGGGCTCCAGGGAGCAGGGCTGCCTCTGTCCCTGCCCAGCCTCCTTTACCCAGTCTCATCTGGTCACTTCCTTGGCTCTGCTGCCTGGGGAGTGGTCGCCTGCAGAGGACATGCCCCTCCATCCCTCCCAAGAAAACTCCTTTGCCCCGGCGGACATTCCTGTTAAGGGCCCACTCCTCTTCCCTGAAGCCAGACCGTGGCTTATGTCTGCACGCTGCTGGGTTCGTCCCTTTCCTTTTGTGACATGGGGTTGCCTCATTCCCCATGACACCACCCCTCTGCATGAGGAAGTTTCCCCTTGCCCCTGTCTCAGACTTGGATACCTTTACCTGCTGCTCACACAAAGCCTGTGGTGCCGGGTTCGGGTGCCCTCATTGTCAACTGCAGGACCCATTCCCCGAACCTCACATCCGTGTACCCTTGCCTTCCCCTCCTATCTCAATGATCATGACCTTGGACATCTCTGCCAGGCCAAACCCCAAGGCTGGAACACTCCTCAGCCATTTCTCCATTGCGGCTTCCTGGCTGTAGACTCAGGTTAG MDDSGELGGLETMETLTELGDELTLGDIDEMLQFVSNQVGEFPDLFSEQLCSSFPGSGGSGSSSGSSGSSSSSSNGRGSSSGAVDPSVQRSFTQVTLPSFSPSAASPQAPTLQVKVSPTSVPTTPRATPILQPRPQPQPQPQTQLQQQTVMITPTFSTTPQTRIIQQPLIYQNAATSFQVLQPQVQSLVTSSQVQPVTIQQQVQTVQAQRVLTQTANGTLQTLAPATVQTVAAPQVQQVPVLVQPQIIKTDSLVLTTLKTDGSPVMAAVQNPALTALTTPIQTAALQVPTLVGSSGTILTTMPVMMGQEKVPIKQVPGGVKQLEPPKEGERRTTHNIIEKRYRSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNKLLKGIDLGSLVDNEVDLKIEDFNQNVLLMSPPASDSGSQAGFSPYSIDSEPGSPLLDDAKVKDEPDSPPVALGMVDRSRILLCVLTFLCLSFNPLTSLLQWGGAHDSDQHPHSGSGRSVLSFESGSGGWFDWMMPTLLLWLVNGVIVLSVFVKLLVHGEPVIRPHSRSSVTFWRHRKQADLDLARGDFAAAAGNLQTCLAVLGRALPTSRLDLACSLSWNVIRYSLQKLRLVRWLLKKVFQCRRATPATEAGFEDEAKTSARDAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLAMQVPLRPRRPWAACTIPENPRMESQAHDQLPTPCPGGRKATASAVRRPSRSSMCIFRVPSTGALPWKPIYMQKWTGSLLSSATALQTSLSRLASPGGQVPQLLIVTLSVLRLCTPISPPIPGQHLPG*GKKTAARHQ*PKAGLRASSDGQNH*MV*WDLLQVTHV*VPQPSCRPCPRAPGSRAASVPAQPPLPSLIWSLPWLCCLGSGRLQRTCPSIPPKKTPLPRRTFLLRAHSSSLKPDRGLCLHAAGFVPFLL*HGVASFPMTPPLCMRKFPLAPVSDLDTFTCCSHKACGAGFGCPHCQLQDPFPEPHIRVPLPSPPISMIMTLDISARPNPKAGTLLSHFSIAASWL*TQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28005 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 7 TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41728201:- chr17:39873994-39890896:- chr17:39884453:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41817058:+ chr17:39968932-39979465:+ chr17:39973310:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HAP1_N|108-438|3.3e-97^CDC45|205-391|7.1e-05^Thg1C|223-292|0.00022^bZIP_1|224-254|0.019^Dicty_REP|226-290|0.003^DUF724|259-295|0.13^NOA36|265-294|0.00019^bZIP_1|322-347|3e-05^DUF724|327-408|2.8e-05^bZIP_1|387-404|0.26 FKBP_C-PARTIAL|~246-258|7.4e-35^FKBP_C|281-370|1.4e-33^FKBP_C|392-483|6e-30^EF-hand_1|505-528|1.1e-06^EF-hand_5|505-525|1.5e-06^EF-hand_7|505-526|0.00018^EF-hand_6|505-527|0.00014^EF-hand_7|545-580|4.9e-06^EF-hand_1|548-568|4.6e-07^EF-hand_5|548-568|2.3e-07^EF-hand_6|555-568|0.0001 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];LOCAL_INVERSION:-:+:[78036] 166 78 166 40.72 ONLY_REF_SPLICE YES_LDAS 2.2344 GT 1.8323 AG 1.9086 ENST00000341193.9 1-1224 ENST00000321562.9 246-1749 chr17|-|[2]41728201-41728331[1]|[0]41731493-41731559[0]|[2]41731638-41731743[2]|[1]41731937-41732118[0]|[2]41732230-41732394[0]|[2]41732695-41732798[1]|[0]41734166-41734634[0]<==>chr17|+|[2]41817058-41817203[0]|[1]41818089-41818278[1]|[2]41818382-41818527[0]|[1]41819210-41819399[1]|[2]41819530-41819675[0]|[1]41820269-41820461[1]|[2]41820947-41821089[0]|[1]41821654-41821817[2]|[0]41822223-41822408[2] atgcgcccgaagaggttgggccggtgctgcgcggggagccggctcggacccggggacccagcagcactcacctgtgcaccttcgccctcagccagtcccgctccggagccctctgcgcagccgcaggcacggggcactggacagagagtaggatcccgagccacctctggatcccagttcctctcggaagcccgcaccggagctcgcccggcctcggaggctggagccaaggcaggagcccggcgcccgtccgcattctcggccatccaaggggatgtccggtctatgcccgacaattcggacgcgccgtggacccgcttcgtattccaagggccgtttggttcccgggccactggccgggggactggaaaggcagcgggcatctggaagacgccagccgcctacgttggccggcgacccggggtgtccggccctgagcgcgccgcctttattcgggagctggaggaagcactgtgtcctaacctacctccgccagtcaaaaagatcacccaggaagacgtcaaagtgatgttatatttgctggaggaggtgtgtactgccttcctgatccagcttctcccacctgtctgggagagcgttacctatgggatggtcctgcagagagagagggacctgaacactgcagctcgcatcggccagtccctggtgaaacagaacagtgttttgatggaggagaacagcaagctggaagccctgctgggctcagccaaggaggagattttatacctcagacaccaggtgaacttgcgggatgagctcctccagctctactcagattctgatgaggaggatgaggatgaagaagaggaggaggaagaaaaggaggcagaagaggaacaggaagaagaagaagcagaggaagacctgcagtgtgctcatccctgtgatgcccctaagctgatttcgcaggaggcattgctgcaccagcaccactgcccacagctggaagccttgcaggagaagctgaggctgctggaggaggagaatcatcagctgagagaagaggcctctcaactcgacactcttgaggatgaggaacagatgctcattctggagtgtgtggagcagttttcggaggccagccaacagatggctgagctgtcggaggtgctggtgctcaggctggaaaactatgaacggcagcagcaggaggtcgctcggctgcaggcccaggtgctgaagctgcagcagcgctgccggatgCTATGATCGCAACACCTTGGTGGCCATCGTGGTGGGTGTGGGGCGCCTCATCACTGGCATGGACCGAGGCCTCATGGGCATGTGTGTCAACGAGCGGCGACGCCTCATTGTGCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGGCGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGTTCTGCTGGATGTGTGGAACAAGGAAGACACCGTGCAGGTGAGCACATTGCTGCGCCCGCCCCACTGCCCCCGCATGGTCCAGGACGGCGACTTTGTCCGCTACCACTACAATGGCACCCTGCTGGACGGCACCTCCTTCGACACCAGCTACAGTAAGGGCGGCACTTATGACACCTACGTCGGCTCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAGGAAGATTATCATCCCTCCATTCCTGGCCTATGGCGAGAAAGGCTATGGGACAGTGATCCCCCCACAGGCCTCGCTGGTCTTTCACGTCCTCCTGATTGACGTGCACAACCCGAAGGACGCTGTCCAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCTACCACTACAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGGGGCTGCAGGGTGCCTGCATGGGGGAACGCCGGAGAATTACCATCCCCCCGCACCTCGCCTATGGGGAGAATGGAACTGGAGACAAGATCCCTGGCTCTGCCGTGCTAATCTTCAACGTCCATGTCATTGACTTCCACAACCCTGCGGATGTGGTGGAAATCAGGACACTGTCCCGGCCATCTGAGACCTGCAATGAGACCACCAAGCTTGGGGACTTTGTTCGATACCATTACAACTGTTCTTTGCTGGACGGCACCCAGCTGTTCACCTCGCATGACTACGGGGCCCCCCAGGAGGCGACTCTCGGGGCCAACAAGGTGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGTGTGTGGGAGAGAGGCGGCAGCTCATCGTGCCCCCGCACCTGGCCCACGGGGAGAGTGGAGCCCGGGGAGTCCCAGGCAGTGCTGTGCTGCTGTTTGAGGTGGAGCTGGTGTCCCGGGAGGATGGGCTGCCCACAGGCTACCTGTTTGTGTGGCACAAGGACCCTCCTGCCAACCTGTTTGAAGACATGGACCTCAACAAGGATGGCGAGGTCCCTCCGGAGGAGTTCTCCACCTTCATCAAGGCTCAAGTGAGTGAGGGCAAAGGACGCCTCATGCCTGGGCAGGACCCTGAGAAAACCATAGGAGACATGTTCCAGAACCAGGACCGCAACCAGGACGGCAAGATCACAGTCGACGAGCTCAAGCTGAAGTCAGATGAGGACGAGGAGCGGGTCCACGAGGAGCTCTGA MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQFLSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGRGTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYLLEEVCTAFLIQLLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRML*SQHLGGHRGGCGAPHHWHGPRPHGHVCQRAATPHCASPPGLWEHRPGGAHSTGCHPLLRCGSAGCVEQGRHRAGEHIAAPAPLPPHGPGRRLCPLPLQWHPAGRHLLRHQLQ*GRHL*HLRRLWLADQGHGPGAAGHVSWREKEDYHPSIPGLWRERLWDSDPPTGLAGLSRPPD*RAQPEGRCPARDAGAPPRLCPQSRGRGLHALPLQWLLDGRHPLRFQLLPQPHLQYLYRAGLHHPRDGPGAAGCLHGGTPENYHPPAPRLWGEWNWRQDPWLCRANLQRPCH*LPQPCGCGGNQDTVPAI*DLQ*DHQAWGLCSIPLQLFFAGRHPAVHLA*LRGPPGGDSRGQQGDRRPGHGPAGHVCGREAAAHRAPAPGPRGEWSPGSPRQCCAAV*GGAGVPGGWAAHRLPVCVAQGPSCQPV*RHGPQQGWRGPSGGVLHLHQGSSE*GQRTPHAWAGP*ENHRRHVPEPGPQPGRQDHSRRAQAEVR*GRGAGPRGAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28006 SREBF2::DBF4B ENSG00000198911.13::ENSG00000161692.18 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 6 TRUE 12 TRUE 4 SREBF2 ENSG00000198911.13 protein_coding + + chr22:41833105-41907306:+ chr22:41885011:+ chr22:42229109-42303310:+ chr22:42281015:+ DBF4B ENSG00000161692.18 protein_coding + + chr17:44708608-44752264:+ chr17:44747083:+ chr17:42785976-42829632:+ chr17:42824451:+ chr22:41890739,chr22:41890739,chr22:41890739,chr22:41890738 chr17:44740132,chr17:44740138,chr17:44740129,chr17:44740129 NA NA chr22:42286743,chr22:42286743,chr22:42286743,chr22:42286742 chr17:42817500,chr17:42817506,chr17:42817497,chr17:42817497 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HLH|331-381|2.3e-18 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr17] 164 90 164 36.72 ONLY_REF_SPLICE YES_LDAS 2.1696 GT 1.5656 AG 1.8323 ENST00000361204.9 1-2208 ENST00000315005.8 831-1848 chr22|+|[0]41833271-41833358[0]|[1]41866831-41867280[0]|[1]41868611-41868792[2]|[0]41870889-41871035[2]|[0]41873798-41874019[2]|[0]41875337-41875451[0]|[1]41875543-41875724[2]|[0]41877229-41877421[0]|[1]41877942-41878123[2]|[0]41880716-41880992[0]|[1]41884842-41885011[2]<==>chr17|+|[2]44747083-44747191[2]|[0]44747391-44747515[1]|[2]44748341-44748465[0]|[1]44750595-44751253[2] atggacgacagcggcgagctgggtggtctggagaccatggagaccctcacggagctgggcgacgagctgaccctgggagacatcgacgagatgctgcaatttgtcagtaatcaagtgggagagttccctgacttgttttcagaacagctgtgtagctcctttcctggcagtggtggtagtggtagcagcagcggcagcagtggcagcagcagcagcagcagcaatggcaggggcagcagcagcggagctgtggacccttcagtgcaacggtcattcacccaggtcacattaccttccttctctccctcggcggcctccccacaggctccaactctgcaagtcaaggtttctcccacctcagttcccaccacacccagggcaactcctattcttcagccccgcccccagccccagcctcaacctcaaactcagctgcaacaacagacggtaatgatcacgccaacattcagcaccactccgcagacgaggatcatccagcagcctttgatataccagaatgcagctactagctttcaagtccttcagcctcaagtccaaagcctggtgacatcctcccaggtacagccggtcaccattcagcagcaggtgcagacagtacaggcccagcgggtgctgacacaaacggccaatggcacgctgcagacccttgccccggctacggtgcagacagttgctgcgccacaggtgcagcaggtcccggtcctggtccagcctcagatcatcaagacagattcccttgttttgaccacactgaagacagatggcagccctgttatggctgcggtccagaacccggccctcaccgccctcaccacccctatccagacggctgcccttcaagtaccaaccctggtgggcagcagtgggaccattctgaccacaatgcctgtaatgatggggcaagagaaagtgcccattaagcaggtacctgggggagtcaagcagcttgagccccccaaagaaggagaaaggcggacaacccataatatcattgagaaacgatatcgctcctccatcaatgacaaaatcatcgaattgaaagacctggtcatggggacagacgccaagatgcacaagtctggcgttctgaggaaggccattgattacatcaaatacttgcagcaggtcaatcataaactgcgccaggagaacatggtgctgaagctggcaaatcaaaagaacaagcttctaaagggcatcgacctaggcagtctggtggacaatgaggtggacctgaagatcgaggactttaatcagaatgtccttctgatgtcccccccagcctctgactcagggtcccaggctggcttctctccctactccattgactctgagccaggaagccctctattggatgatgcaaaggtcaaagatgagccagactctcctcctgtggcgctgggcatggtagaccgctcacggattcttctgtgtgtcctcaccttcctgtgcctctcctttaaccccctgacttccctgctgcagtggggaggggcccacgactctgaccagcacccacactcaggctctggccgcagtgtcctgtcattcgagtcaggttctgggggctggtttgactggatgatgcctactcttctcttatggctggtaaatggtgtgattgtcctgagcgtctttgtgaagctgctggttcatggggagccagtgatccggccacactcgcgctcctcggtcaccttctggaggcaccggaaacaggcagatctggatctcgccagaggagattttgcagctgctgccggcaacctacaaacctgcctggcagttttgggccgggcactgcccacctcccgcctggacctggcctgcagcctctcctggaacgtgatccgctacagcctgcagaagctacgcctggtgcgctggctgctcaagaaagtcttccagtgccggcgggccacgccagccactgaggcaggctttgaagacgaagctaagaccagcgcccgggatgcggctctggcctatcaccggctgcaccagctgcacatcacagggaagcttcctgcaggatccgcctgttccgatgtacacatggcgttgtgtgccgtgaacctggctgaatgtgcagaggagaagatcccaccgagcacactggttgagatccatctgactgctgccatggggctcaagacccggtgtggaggcaagctgggcttcctggccAGAATCCAAGGATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCTGTCAGGAGGCCTTCGAGGAGCTCCATGTGCATCTTCAGAGTGCCCAGCACCGGAGCTTTGCCCTGGAAGCCCATCTATATGCAGAAGTGGACAGGATCATTGCTCAGCTCAGCCACAGCTTTGCAGACATCCCTTTCCAGGCTGGCCTCCCCAGGTGGTCAGGTTCCCCAGCTTCTGATTGTGACCCTCTCTGTCCTGAGACTCTGCACCCCCATCAGCCCTCCCATCCCAGGGCAGCATCTCCCAGGATAAGGAAAGAAGACAGCTGCCAGGCATCAGTGACCCAAGGCAGGGCTGCGGGCCAGCAGCGATGGACAGAATCACTAGATGGTGTGATGGGACCTCCTGCAAGTCACACATGTGTGAGTGCCACAACCCTCCTGCCGGCCTTGCCCAAGGGCTCCAGGGAGCAGGGCTGCCTCTGTCCCTGCCCAGCCTCCTTTACCCAGTCTCATCTGGTCACTTCCTTGGCTCTGCTGCCTGGGGAGTGGTCGCCTGCAGAGGACATGCCCCTCCATCCCTCCCAAGAAAACTCCTTTGCCCCGGCGGACATTCCTGTTAAGGGCCCACTCCTCTTCCCTGAAGCCAGACCGTGGCTTATGTCTGCACGCTGCTGGGTTCGTCCCTTTCCTTTTGTGACATGGGGTTGCCTCATTCCCCATGACACCACCCCTCTGCATGAGGAAGTTTCCCCTTGCCCCTGTCTCAGACTTGGATACCTTTACCTGCTGCTCACACAAAGCCTGTGGTGCCGGGTTCGGGTGCCCTCATTGTCAACTGCAGGACCCATTCCCCGAACCTCACATCCGTGTACCCTTGCCTTCCCCTCCTATCTCAATGATCATGACCTTGGACATCTCTGCCAGGCCAAACCCCAAGGCTGGAACACTCCTCAGCCATTTCTCCATTGCGGCTTCCTGGCTGTAGACTCAGGTTAG MDDSGELGGLETMETLTELGDELTLGDIDEMLQFVSNQVGEFPDLFSEQLCSSFPGSGGSGSSSGSSGSSSSSSNGRGSSSGAVDPSVQRSFTQVTLPSFSPSAASPQAPTLQVKVSPTSVPTTPRATPILQPRPQPQPQPQTQLQQQTVMITPTFSTTPQTRIIQQPLIYQNAATSFQVLQPQVQSLVTSSQVQPVTIQQQVQTVQAQRVLTQTANGTLQTLAPATVQTVAAPQVQQVPVLVQPQIIKTDSLVLTTLKTDGSPVMAAVQNPALTALTTPIQTAALQVPTLVGSSGTILTTMPVMMGQEKVPIKQVPGGVKQLEPPKEGERRTTHNIIEKRYRSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNKLLKGIDLGSLVDNEVDLKIEDFNQNVLLMSPPASDSGSQAGFSPYSIDSEPGSPLLDDAKVKDEPDSPPVALGMVDRSRILLCVLTFLCLSFNPLTSLLQWGGAHDSDQHPHSGSGRSVLSFESGSGGWFDWMMPTLLLWLVNGVIVLSVFVKLLVHGEPVIRPHSRSSVTFWRHRKQADLDLARGDFAAAAGNLQTCLAVLGRALPTSRLDLACSLSWNVIRYSLQKLRLVRWLLKKVFQCRRATPATEAGFEDEAKTSARDAALAYHRLHQLHITGKLPAGSACSDVHMALCAVNLAECAEEKIPPSTLVEIHLTAAMGLKTRCGGKLGFLARIQGWRAKPTISCPHHAQEEERLLRVLSGGLRGAPCASSECPAPELCPGSPSICRSGQDHCSAQPQLCRHPFPGWPPQVVRFPSF*L*PSLS*DSAPPSALPSQGSISQDKERRQLPGISDPRQGCGPAAMDRITRWCDGTSCKSHMCECHNPPAGLAQGLQGAGLPLSLPSLLYPVSSGHFLGSAAWGVVACRGHAPPSLPRKLLCPGGHSC*GPTPLP*SQTVAYVCTLLGSSLSFCDMGLPHSP*HHPSA*GSFPLPLSQTWIPLPAAHTKPVVPGSGALIVNCRTHSPNLTSVYPCLPLLSQ*S*PWTSLPGQTPRLEHSSAISPLRLPGCRLRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28007 PHF12::MYO18A ENSG00000109118.14::ENSG00000196535.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 4 TRUE 10 TRUE 3 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950065:- chr17:27232268-27278789:- chr17:27277083:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29114097:- chr17:27398140-27507416:- chr17:27441115:- chr17:28938042,chr17:28938042,chr17:28938044,chr17:28938049,chr17:28938045,chr17:28938044 chr17:29117613,chr17:29117632,chr17:29117612,chr17:29117612,chr17:29117615,chr17:29117714 NA NA chr17:27265060,chr17:27265060,chr17:27265062,chr17:27265067,chr17:27265063,chr17:27265062 chr17:27444631,chr17:27444650,chr17:27444630,chr17:27444630,chr17:27444633,chr17:27444732 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PHD|83-126|3.8e-14 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.12Mb] 85 41 85 2.84 ONLY_REF_SPLICE YES_LDAS 0.9495 GT 1.8295 AG 1.9086 ENST00000584685.1 1-320 ENST00000527372.7 2512-6165 chr17|-|[1]28950065-28950246[0]|[2]28951467-28951604[0]<==>chr17|-|[2]29074770-29074914[2]|[1]29082316-29082438[2]|[1]29085604-29085648[2]|[1]29086438-29086577[0]|[2]29086936-29087121[0]|[2]29089961-29090098[0]|[2]29090532-29090615[0]|[2]29090810-29090926[0]|[2]29092343-29092456[0]|[2]29092855-29093001[0]|[2]29093323-29093427[0]|[2]29093980-29094090[0]|[2]29094650-29094850[0]|[2]29094936-29095059[2]|[1]29096761-29096915[0]|[2]29097223-29097350[1]|[0]29097788-29097899[0]|[2]29098105-29098224[0]|[2]29098356-29098445[0]|[2]29098826-29098969[0]|[2]29099634-29099762[0]|[2]29103599-29103664[0]|[2]29107080-29107189[1]|[0]29109858-29110101[0]|[2]29110436-29110622[2]|[1]29111424-29111583[1]|[0]29111722-29111863[0]|[2]29114011-29114097[0] atgccagcgcggctgcgcgctggggggtactccctcaccgcggctgcgcgggagccaggccgccggctgtcactgcggttgcgcgcggcgagcgccgatcccggggcgcctgcgcgggtggctttgcgggcgctcgcgcaaatccaagctctgctggctccccccaagacggacgaggcagaaaagcgcagtcggaagcctgagaaggagccccggagaagcggcagggccaccaaccacgacagctgcgatagctgcaaggaaggtggagatctcctgtgctgcgaccactgcccggctgccttccacctccagtgctgGAGAACATCGAGCTGGCGTTTGACGACTTGGAACCCCCGACGGATGACTCTGTGGCTGCTGTGGACCAGGCCTCCCATCAGTCCCTGGTCCGCTCGCTGGCCCGCACAGACGAGGCGAGGGGCCTGCTCTGGCTATTGGAAGAGGAGGCTCTGGTGCCAGGGGCCAGTGAGGACACCCTCCTGGAGCGCCTTTTCTCCTATTATGGCCCCCAGGAAGGTGACAAAAAAGGCCAAAGCCCCCTTCTGCACAGCAGCAAACCACACCACTTTCTCCTGGGCCACAGCCATGGCACCAACTGGGTAGAGTACAATGTGACTGGCTGGCTGAACTACACCAAGCAGAACCCAGCCACCCAGAATGCCCCCCGGCTCCTGCAGGACTCCCAGAAAAAAATCATCAGCAACCTGTTTCTGGGCCGCGCAGGCAGTGCCACGGTGCTCTCTGGCTCCATCGCGGGCCTGGAGGGCGGCTCGCAGCTGGCACTGCGCCGGGCCACCAGCATGCGGAAAACCTTTACCACAGGCATGGCGGCTGTCAAAAAGAAGTCACTGTGCATCCAGATGAAGCTACAGGTGGACGCCCTCATCGACACCATCAAGAAGTCAAAGCTGCATTTTGTGCACTGCTTCCTGCCTGTAGCTGAGGGCTGGGCTGGGGAGCCCCGTTCCGCCTCCTCCCGCCGAGTCAGCAGCAGCAGTGAGCTGGACCTGCCCTCGGGAGACCACTGCGAGGCTGGGCTCCTGCAGCTCGACGTGCCCCTGCTCCGCACCCAGCTCCGCGGCTCCCGCCTGCTCGATGCCATGCGCATGTACCGCCAAGGTTACCCTGACCACATGGTGTTTTCCGAGTTCCGCCGCCGCTTTGATGTCCTGGCCCCGCACCTGACCAAGAAACACGGGCGTAACTACATCGTGGTGGATGAAAGGCGGGCAGTGGAGGAGCTGCTGGAGTGCTTGGATCTGGAGAAGAGCAGCTGCTGCATGGGCCTGAGCCGGGTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACCAGCAGGAACCTAACCCTGTTCCAAGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAGATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGCCCCTCATCGAAGTACAGCTGTCAGAGGAGCAGATCCGGAACAAAGACGAGGAGATCCAGCAGCTGCGGAGCAAGCTCGAGAAGGCGGAGAAGGAGAGGAACGAGCTGCGGCTCAACAGTGACCGGCTGGAGAGCCGGATCTCAGAGCTGACATCGGAGCTGACAGATGAGCGTAACACAGGAGAGTCCGCCTCCCAGCTGCTGGACGCGGAGACAGCAGAGAGGCTCCGGGCTGAGAAGGAGATGAAGGAACTGCAGACCCAGTACGATGCACTGAAGAAGCAGATGGAGGTTATGGAAATGGAGGTGATGGAGGCCCGTCTCATCCGGGCAGCGGAGATCAACGGGGAAGTGGATGATGATGATGCAGGTGGCGAGTGGCGGCTGAAGTATGAGCGGGCTGTGCGGGAGGTGGACTTCACCAAGAAACGGCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGAACGGCGGCTCGGGGACCTGCAGGCAGATAGTGAGGAGAGTCAGCGGGCTCTGCAGCAGCTCAAGAAGAAGTGCCAGCGACTGACGGCTGAGCTGCAAGACACCAAGCTGCACCTGGAGGGCCAGCAGGTCCGCAACCACGAACTGGAGAAGAAGCAGAGGAGGTTTGACAGTGAGCTCTCGCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAGAAGGACATGCTCCTCGCTGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGACATTGCAGGGTTCACCCAGAAGGTTGTGTCTCTAGAGGCAGAGCTCCAGGACATTTCTTCCCAAGAGTCCAAGGATGAGGCTTCTCTGGCCAAGGTCAAGAAACAGCTCCGGGACCTGGAGGCCAAAGTCAAGGATCAGGAAGAAGAGCTGGATGAGCAGGCAGGGACCATCCAGATGCTGGAACAGGCCAAGCTGCGTCTGGAGATGGAGATGGAGCGGATGAGACAGACCCATTCTAAGGAGATGGAGAGTCGGGATGAGGAGGTGGAGGAGGCCCGGCAGTCGTGTCAGAAGAAGTTAAAACAGATGGAGGTGCAGCTAGAGGAAGAGTATGAGGACAAGCAGAAGGTTCTGCGAGAGAAGCGGGAGCTGGAGGGCAAGCTCGCCACCCTCAGCGACCAGGTGAACCGGCGGGACTTTGAGTCAGAGAAGCGGCTGCGGAAGGACCTGAAGCGCACCAAGGCCCTGCTGGCAGATGCCCAGCTCATGCTGGACCACCTGAAGAACAGTGCTCCCAGCAAGCGAGAGATTGCCCAGCTCAAGAACCAGCTGGAGGAGTCAGAGTTCACCTGTGCGGCAGCCGTGAAAGCACGGAAAGCAATGGAGGTGGAGATCGAAGACCTGCACCTGCAGATTGATGACATCGCCAAAGCCAAGACAGCGCTGGAGGAGCAGCTGAGCCGCCTTCAGCGTGAGAAGAATGAGATCCAGAACCGGCTGGAGGAAGATCAGGAAGACATGAACGAATTGATGAAGAAGCACAAGGCTGCCGTGGCTCAGGCTTCCCGGGACCTGGCTCAGATAAATGATCTCCAAGCTCAGCTAGAAGAAGCCAACAAAGAGAAGCAGGAGCTGCAGGAGAAGCTACAAGCCCTCCAGAGCCAGGTGGAGTTCCTGGAGCAGTCCATGGTGGACAAGTCCCTGGTGAGCAGGCAGGAAGCTAAGATACGGGAGCTGGAGACACGCCTGGAGTTTGAAAGGACGCAAGTGAAACGGCTGGAGAGCCTGGCTAGCCGTCTCAAGGAAAACATGGAGAAGCTGACTGAGGAGCGGGATCAGCGCATTGCAGCCGAGAACCGGGAGAAGGAACAGAACAAGCGGCTACAGAGGCAGCTCCGGGACACCAAGGAGGAGATGGGCGAGCTTGCCAGGAAGGAGGCCGAGGCGAGCCGCAAGAAGCACGAACTGGAGATGGATCTAGAAAGCCTGGAGGCTGCTAACCAGAGCCTGCAGGCTGACCTAAAGTTGGCATTCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGATGAGATGGAGAGTGATGAGAATGAGGACCTCATCAACAGTTTGCAGGACATGGTGACAAAGTATCAGAAAAGAAAGAATAAACTTGAGGGAGACTCTGATGTGGACTCGGAGCTGGAGGACCGTGTTGACGGGGTCAAGTCCTGGTTGTCAAAAAACAAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGATCGGTCAGATGATGAGCACGACCCTCTCGACAACACCTCCAGACCGCGATACTCCCACAGTTATCTGAGTGACAGCGACACAGAGGCCAAGCTGACGGAGACTAACGCATAG MPARLRAGGYSLTAAAREPGRRLSLRLRAASADPGAPARVALRALAQIQALLAPPKTDEAEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCWRTSSWRLTTWNPRRMTLWLLWTRPPISPWSARWPAQTRRGACSGYWKRRLWCQGPVRTPSWSAFSPIMAPRKVTKKAKAPFCTAANHTTFSWATAMAPTG*STM*LAG*TTPSRTQPPRMPPGSCRTPRKKSSATCFWAAQAVPRCSLAPSRAWRAARSWHCAGPPACGKPLPQAWRLSKRSHCASR*SYRWTPSSTPSRSQSCILCTASCL*LRAGLGSPVPPPPAESAAAVSWTCPRETTARLGSCSSTCPCSAPSSAAPACSMPCACTAKVTLTTWCFPSSAAALMSWPRT*PRNTGVTTSWWMKGGQWRSCWSAWIWRRAAAAWA*AGCSSGRAPWHGWRSSGMNKPAGT*PCSKQPAGATWPASTSRRERSRTWPFAVYRRTSRRTKG*RTGPGGSFLPQ*GPSSKYSCQRSRSGTKTRRSSSCGASSRRRRRRGTSCGSTVTGWRAGSQS*HRS*QMSVTQESPPPSCWTRRQQRGSGLRRR*RNCRPSTMH*RSRWRLWKWR*WRPVSSGQRRSTGKWMMMMQVASGG*SMSGLCGRWTSPRNGSSRSLRTSWRWSSRTRGSWNGGSGTCRQIVRRVSGLCSSSRRSASD*RLSCKTPSCTWRASRSATTNWRRSRGGLTVSSRRRMRRPSGRSCSGRSCSGRRTCSSLRLSA*SSN*RKKTWTLQGSPRRLCL*RQSSRTFLPKSPRMRLLWPRSRNSSGTWRPKSRIRKKSWMSRQGPSRCWNRPSCVWRWRWSG*DRPILRRWRVGMRRWRRPGSRVRRS*NRWRCS*RKSMRTSRRFCERSGSWRASSPPSATR*TGGTLSQRSGCGRT*SAPRPCWQMPSSCWTT*RTVLPASERLPSSRTSWRSQSSPVRQP*KHGKQWRWRSKTCTCRLMTSPKPRQRWRSS*AAFSVRRMRSRTGWRKIRKT*TN**RSTRLPWLRLPGTWLR*MISKLS*KKPTKRSRSCRRSYKPSRARWSSWSSPWWTSPW*AGRKLRYGSWRHAWSLKGRK*NGWRAWLAVSRKTWRS*LRSGISALQPRTGRRNRTSGYRGSSGTPRRRWASLPGRRPRRAARSTNWRWI*KAWRLLTRACRLT*SWHSSASGTCRLPLRMRWRVMRMRTSSTVCRTW*QSIRKERINLRETLMWTRSWRTVLTGSSPGCQKTRDLPRQLLMMAA*RVPAPPATGSPLPLIGQMMSTTLSTTPPDRDTPTVI*VTATQRPS*RRLTH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28010 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41727762:- chr17:39873994-39890896:- chr17:39884014:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41816870:+ chr17:39968932-39979465:+ chr17:39973122:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];LOCAL_INVERSION:-:+:[78036] 50 118 50 49.83 INCL_NON_REF_SPLICE YES_LDAS 1.0791 GT 1.8256 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28011 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 9 TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27261102:+ chr1:27561123-27635127:+ chr1:27587593:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286616:- chr18:46562757-46987717:- chr18:46812986:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40-PARTIAL|41-48~|8e-11^ANAPC4_WD40-PARTIAL|44-48~|0.0001^NBCH_WD40-PARTIAL|44-48~|0.00038 none ["DYM:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr18] 46 23 46 15.33 ONLY_REF_SPLICE YES_LDAS 0.6629 GT 1.9086 AG 1.9656 ENST00000361771.7 1-48 ENST00000675505.1 764-2175 chr1|+|[0]27261055-27261102[2]<==>chr18|-|[2]49044055-49044204[0]|[2]49097402-49097515[0]|[2]49118744-49118926[0]|[2]49163685-49163787[2]|[1]49209551-49209715[2]|[1]49257010-49257104[0]|[2]49258380-49258493[0]|[2]49272178-49272303[0]|[2]49281997-49282175[1]|[0]49286434-49286616[1] atggcgaaagtcaacataactagagacctcatccgtaggcagatcaagCAGGACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAGATAGCAGTCCTTTCCCCTCATCAATTCCACATGCCTTCCAGATCAACTTTAATAGTTTGTACACAGCTCTTTGTGAACAGCAGACATCTGATCAAGCAACTCTCCTCTTGTATACCTTGCTCCATCAAAATAGTAATATTAGAACATACATGTTGGCTCGCACAGATATGGAAAATCTTGTTTTACCAATTCTTGAGATTCTGTATCATGTTGAAGAAAGGAATTCACACCATGTGTATATGGCCCTTATAATATTGTTGATCCTTACGGAAGATGATGGCTTCAACAGATCCATTCATGAAGTGATACTAAAAAATATTACTTGGTATTCAGAACGAGTTTTAACTGAAATCTCCTTGGGGAGTCTCCTGATCCTGGTGGTAATAAGAACCATTCAATACAACATGACTAGGACACGAGACAAGTACCTTCACACAAATTGTTTGGCAGCTTTAGCAAATATGTCGGCACAGTTTCGTTCTCTCCATCAGTATGCTGCCCAGAGGATCATCAGTTATACCTGCCGCCACTTGCGGAGATATGTTTATGTGTTGGACAAACTGTATTTCCCCCACTCTCACTGTTCTACGCTTCAGCATTGCTTCTCGACCCTCAGTGACAATGGAGAGGAACTCTTGTCTTTAACTTGCTCTCACATTCTCAGATCCTATGCTTCCAGTTTATTTTCTTTGCTGTCTAAAAAACACAACAAAGTTCTGGAACAAGCCACACAGTCCTTGAGAGGTTCGCTGAGTTCTAATGATGTTCCTCTACCAGATTATGCACAAGACCTAAATGTCATTGAAGAAGTGATTCGAATGATGTTAGAGATCATCAACTCCTGCCTGACAAATTCCCTTCACCACAACCCAAACTTGGTATACGCCCTGCTTTACAAACGCGATCTCTTTGAACAATTTCGAACTCATCCTTCATTTCAGGATATAATGCAAAATATTGATCTGGTGATCTCCTTCTTTAGCTCAAGGTTGCTGCAAGCTGGAGCTGAGCTGTCAGTGGAACGGGTCCTGGAAATCATTAAGCAAGGCGTCGTTGCGCTGCCCAAAGACAGACTGAAGAAATTTCCAGAATTGAAATTCAAATATGTGGAAGAGGAGCAGCCCGAGGAGTTTTTTATCCCCTATGTCTGGTCTCTTGTCTACAACTCAGCAGTCGGCCTGTACTGGAATCCACAGGACATCCAGCTGTTCACCATGGATTCCGACTGA MAKVNITRDLIRRQIKQDSGLSSH*VVWAAKRLPLQSFLPLWPTRVSCFCWCWPI*QMPQMRQTPTDKPLCPSRTHKIAVLSPHQFHMPSRSTLIVCTQLFVNSRHLIKQLSSCIPCSIKIVILEHTCWLAQIWKILFYQFLRFCIMLKKGIHTMCIWPL*YC*SLRKMMASTDPFMK*Y*KILLGIQNEF*LKSPWGVS*SWW**EPFNTT*LGHETSTFTQIVWQL*QICRHSFVLSISMLPRGSSVIPAATCGDMFMCWTNCISPTLTVLRFSIASRPSVTMERNSCL*LALTFSDPMLPVYFLCCLKNTTKFWNKPHSP*EVR*VLMMFLYQIMHKT*MSLKK*FE*C*RSSTPA*QIPFTTTQTWYTPCFTNAISLNNFELILHFRI*CKILIW*SPSLAQGCCKLELSCQWNGSWKSLSKASLRCPKTD*RNFQN*NSNMWKRSSPRSFLSPMSGLLSTTQQSACTGIHRTSSCSPWIPT FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28012 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41728201:- chr17:39873994-39890896:- chr17:39884453:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41816870:+ chr17:39968932-39979465:+ chr17:39973122:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];LOCAL_INVERSION:-:+:[78036] 37 88 37 13.24 INCL_NON_REF_SPLICE YES_LDAS 0.543 GT 1.8323 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28015 PPM1D::BCAS3 ENSG00000170836.13::ENSG00000141376.24 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 11 FALSE NA FALSE NA PPM1D ENSG00000170836.13 protein_coding + + chr17:60600193-60666280:+ chr17:60600886:+ chr17:58677554-58743641:+ chr17:58678247:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:60709219:+ chr17:58754814-59470199:+ chr17:58786580:+ chr17:60609400,chr17:60609400 chr17:60691991,chr17:60691988 NA NA chr17:58686761,chr17:58686761 chr17:58769352,chr17:58769349 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PP2C|71-156|5.3e-19 BCAS3_WD40-PARTIAL|~215-536|0^PROPPIN|333-434|4.6e-05^WD40|344-375|5.8e-06^WD40|401-424|0.0014^DUF6590|403-447|7.7e-05^BCAS3|640-665|0.5^BCAS3|716-757|9.8e-08 ["PPM1D:Oncogene"];["BCAS3:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[11173] 25 6 25 6 ONLY_REF_SPLICE YES_LDAS 0.3351 GT 1.7819 AG 1.6729 ENST00000685212.1 1-472 ENST00000588462.5 215-2853 chr17|+|[0]60600415-60600886[0]<==>chr17|+|[1]60709219-60709325[2]|[0]60747198-60747279[0]|[1]60808004-60808076[1]|[2]60868576-60868683[1]|[2]60874662-60874738[0]|[1]60889695-60889771[2]|[0]60902620-60902703[2]|[0]60910532-60910702[2]|[0]60924407-60924500[0]|[1]60947219-60947352[2]|[0]60989971-60990235[0]|[1]61015751-61015901[1]|[2]61026866-61026910[1]|[2]61034666-61034790[0]|[1]61037889-61038054[1]|[2]61040792-61040892[0]|[1]61074920-61075020[2]|[0]61078333-61078529[1]|[2]61084467-61084564[0]|[1]61368327-61368494[0]|[1]61380506-61380571[0]|[1]61391977-61392125[2] atggcggggctgtactcgctgggagtgagcgtcttctccgaccagggcgggaggaagtacatggaggacgttactcaaatcgttgtggagcccgaaccgacggctgaagaaaagccctcgccgcggcggtcgctgtctcagccgttgcctccgcggccgtcgccggccgcccttcccggcggcgaagtctcggggaaaggcccagcggtggcagcccgagaggctcgcgaccctctcccggacgccggggcctcgccggcacctagccgctgctgccgccgccgttcctccgtggcctttttcgccgtgtgcgacgggcacggcgggcgggaggcggcacagtttgcccgggagcacttgtggggtttcatcaagaagcagaagggtttcacctcgtccgagccggctaaggtttgcgctgccatccgcaaaggctttctcgcttgtcaccttgccatgtggaagaaactggATACATCAAGAAATCTGGAATTTCATGAAATACATAGTACTGGGAATGAACCGCCTTTGTTGATTATGATTGGCTACAGTGATGGAATGCAGGTCTGGAGCATCCCTATCAGTGGTGAAGCACAAGAGCTCTTCTCTGTTCGACATGGCCCAATTCGAGCGGCTAGAATCTTGCCTGCTCCACAGTTTGGTGCTCAAAAATGTGATAACTTTGCTGAAAAAAGACCCCTCCTTGGTGTTTGTAAGAGCATTGGATCTTCTGGCACAAGCCCACCGTACTGTTGTGTGGATCTGTATTCACTTCGTACTGGGGAGATGGTCAAGTCCATTCAATTTAAGACACCTATTTATGATCTCCATTGCAATAAACGGATCCTTGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGCTGTACTTTCACGAAGAAATTCTTTGTTACAAGCTGCTATCCATGTCCAGGGCCAAACATGAATCCTATTGCTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAACAAGTTGATTCGATGTCATCAGTCCCGTGGTGGAGCCTGTGGAGACAACATTCAGTCTTATACTGCCACAGTCATTAGTGCTGCTAAAACATTGAAAAGTGGCCTGACAATGGTAGGGAAAGTGGTGACTCAGCTGACAGGCACACTGCCTTCAGGTGTGACAGAAGATGATGTTGCCATCCACAGTAATTCACGGCGGAGTCCTTTGGTCCCAGGCATCATCACAGTTATTGACACCGAAACCGTTGGAGAGGGCCAGGTGCTTGTGAGTGAGGATTCTGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCATGAGAAGCCAGTGTGCTGCATGGCTTTTAATACAAGTGGAATGCTTCTAGTCACAACAGACACCCTTGGCCATGACTTTCATGTCTTCCAAATTCTGACTCATCCTTGGTCCTCATCACAATGTGCTGTCCACCATCTGTATACTCTTCACAGGGGAGAAACTGAAGCCAAAGTACAGGACATCTGCTTCAGCCATGACTGTCGCTGGGTTGTGGTCAGTACTCTCCGGGGTACTTCCCACGTTTTCCCCATCAACCCTTATGGTGGCCAGCCTTGTGTTCGTACACATATGTCACCACGAGTAGTGAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGACTGGAAGAGATTGAACAAGAACTGACGTCTAAGCAAGGAGGTCGCTGTAGCCCTGTTCCAGGTCTATCAAGCAGCCCTTCTGGGTCACCCTTGCATGGGAAACTGAACAGCCAAGACTCCTATAACAATTTTACCAACAACAACCCTGGCAACCCTCGGCTCTCTCCTCTTCCCAGCTTGATGGTAGTGATGCCTCTTGCACAAATCAAGCAGCCAATGACATTGGGGACCATCACCAAACGAACCGGGCCTTATCTCTTTGGAGCGGGGTGTTTTTCCATAAAAGCCCCATGCAAAGTTAAACCTCCTCCACAAATTTCACCCAGCAAATCGATGGGCGGAGAATTTTGTGTGGCTGCTATCTTCGGAACATCCAGGTCATGGTTTGCAAATAATGCAGGTCTGAAAAGAGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAGTCCCTGTACATTATCAGTTGCTATGGCACCTTAGTGGAACACATGATGGAGCCGCGACCCCTCAGCACTGCACCCAAGATTAGTGACGACACACCACTGGAAATGATGACATCGCCTCGAGCCAGCTGGACTCTGGTTAGAACCCCTCAATGGAATGAATTGCAGCCACCGTTTAATGCAAACCACCCTCTGCTCCTCGCTGCAGATGCAGTACAGTATTATCAGTTCCTGCTTGCTGGCCTGGTTCCCCCTGGAAGTCCTGGGCCCATTACTCGACATGGGTCTTACGACAGTTTAGCTTCTGACCATAGTGGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTAACACACACTGGACCCCATAGACGTCTGTGGATGGGTCCACAGTTCCAGTTCAAAACCATCCATCCCTCAGGCCAAACCACAGTTATCTCATCCAGTTCATCTGTGTTGCAGTCTCATGGTCCGAGTGACACGCCACAGCCTCTTTTGGATTTTGATACAGATGATCTTGATCTCAACAGTCTCAGGATCCAGCCAGTCCGCTCTGACCCCGTCAGCATGCCAGGGTCATCCCGTCCAGTCTCTGATCGAAGGGGAGTTTCCACAGTGATTGATGCTGCCTCAGGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAGACACAGCCCTTGACGTAGCAGTAAAAACCTTCCCCCCTGAGAGACACGTGGCAGTGAAGTGTTTTGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAG MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPGGEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHLWGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLDTSRNLEFHEIHSTGNEPPLLIMIGYSDGMQVWSIPISGEAQELFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGVCKSIGSSGTSPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTEDDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQELTSKQGGRCSPVPGLSSSPSGSPLHGKLNSQDSYNNFTNNNPGNPRLSPLPSLMVVMPLAQIKQPMTLGTITKRTGPYLFGAGCFSIKAPCKVKPPPQISPSKSMGGEFCVAAIFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMMEPRPLSTAPKISDDTPLEMMTSPRASWTLVRTPQWNELQPPFNANHPLLLAADAVQYYQFLLAGLVPPGSPGPITRHGSYDSLASDHSGQEDEEWLSQVEIVTHTGPHRRLWMGPQFQFKTIHPSGQTTVISSSSSVLQSHGPSDTPQPLLDFDTDDLDLNSLRIQPVRSDPVSMPGSSRPVSDRRGVSTVIDAASGTFDRSVTLLEVCGSWPEGFGLRHMSSMEHTEEGLRERLADAMAESPSRDVVGSGTDTALDVAVKTFPPERHVAVKCFELQREGSIETLSNSSGSTSGSIPRNFDGYRSPLPTNESQPLSLFPTGFP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase, Mg2+/Mn2+ dependent 1D 1 Yes glioma, ovarian cancer, breast cancer epithelial oncogene amplification, missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 28016 HAP1::FKBP10 ENSG00000173805.16::ENSG00000141756.20 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 8 TRUE 13 TRUE 5 HAP1 ENSG00000173805.16 protein_coding - - chr17:41717742-41734644:- chr17:41727762:- chr17:39873994-39890896:- chr17:39884014:- FKBP10 ENSG00000141756.20 protein_coding + + chr17:41812680-41823213:+ chr17:41817058:+ chr17:39968932-39979465:+ chr17:39973310:+ chr17:41727513,chr17:41727513,chr17:41727515 chr17:41816020,chr17:41816022,chr17:41816018 NA NA chr17:39883765,chr17:39883765,chr17:39883767 chr17:39972272,chr17:39972274,chr17:39972270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HAP1_N|108-460|3.4e-112^CDC45|197-411|0.00055^TSC22|214-232|0.095^bZIP_1|216-246|0.018^Dicty_REP|218-282|0.003^NOA36|257-286|0.00018^bZIP_1|314-339|3.3e-05^TSC22|315-342|0.00016^bZIP_1|379-416|0.063^TSC22|382-421|0.048^TSC22|447-459|0.23 FKBP_C-PARTIAL|~246-258|7.4e-35^FKBP_C|281-370|1.4e-33^FKBP_C|392-483|6e-30^EF-hand_1|505-528|1.1e-06^EF-hand_5|505-525|1.5e-06^EF-hand_7|505-526|0.00018^EF-hand_6|505-527|0.00014^EF-hand_7|545-580|4.9e-06^EF-hand_1|548-568|4.6e-07^EF-hand_5|548-568|2.3e-07^EF-hand_6|555-568|0.0001 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];LOCAL_INVERSION:-:+:[78036] 25 101 25 14.21 ONLY_REF_SPLICE YES_LDAS 0.4238 GT 1.8256 AG 1.9086 ENST00000310778.5 1-1275 ENST00000321562.9 246-1749 chr17|-|[2]41727762-41727836[0]|[2]41728201-41728331[1]|[0]41731493-41731559[0]|[2]41731638-41731743[2]|[1]41731937-41732118[0]|[2]41732230-41732394[0]|[2]41732719-41732798[1]|[0]41734166-41734634[0]<==>chr17|+|[2]41817058-41817203[0]|[1]41818089-41818278[1]|[2]41818382-41818527[0]|[1]41819210-41819399[1]|[2]41819530-41819675[0]|[1]41820269-41820461[1]|[2]41820947-41821089[0]|[1]41821654-41821817[2]|[0]41822223-41822408[2] atgcgcccgaagaggttgggccggtgctgcgcggggagccggctcggacccggggacccagcagcactcacctgtgcaccttcgccctcagccagtcccgctccggagccctctgcgcagccgcaggcacggggcactggacagagagtaggatcccgagccacctctggatcccagttcctctcggaagcccgcaccggagctcgcccggcctcggaggctggagccaaggcaggagcccggcgcccgtccgcattctcggccatccaaggggatgtccggtctatgcccgacaattcggacgcgccgtggacccgcttcgtattccaagggccgtttggttcccgggccactggccgggggactggaaaggcagcgggcatctggaagacgccagccgcctacgttggccggcgacccggggtgtccggccctgagcgcgccgcctttattcgggagctggaggaagcactgtgtcctaacctacctccgccagtcaaaaagatcacccaggaagacgtcaaagtgatgttatatttgctggaggagcttctcccacctgtctgggagagcgttacctatgggatggtcctgcagagagagagggacctgaacactgcagctcgcatcggccagtccctggtgaaacagaacagtgttttgatggaggagaacagcaagctggaagccctgctgggctcagccaaggaggagattttatacctcagacaccaggtgaacttgcgggatgagctcctccagctctactcagattctgatgaggaggatgaggatgaagaagaggaggaggaagaaaaggaggcagaagaggaacaggaagaagaagaagcagaggaagacctgcagtgtgctcatccctgtgatgcccctaagctgatttcgcaggaggcattgctgcaccagcaccactgcccacagctggaagccttgcaggagaagctgaggctgctggaggaggagaatcatcagctgagagaagaggcctctcaactcgacactcttgaggatgaggaacagatgctcattctggagtgtgtggagcagttttcggaggccagccaacagatggctgagctgtcggaggtgctggtgctcaggctggaaaactatgaacggcagcagcaggaggtcgctcggctgcaggcccaggtgctgaagctgcagcagcgctgccggatgtatggggctgagactgaaaagttgcagaagcagctggcttcggagaaggaaatccagatgcagctccaggaagagCTATGATCGCAACACCTTGGTGGCCATCGTGGTGGGTGTGGGGCGCCTCATCACTGGCATGGACCGAGGCCTCATGGGCATGTGTGTCAACGAGCGGCGACGCCTCATTGTGCCTCCCCACCTGGGCTATGGGAGCATCGGCCTGGCGGGGCTCATTCCACCGGATGCCACCCTCTACTTCGATGTGGTTCTGCTGGATGTGTGGAACAAGGAAGACACCGTGCAGGTGAGCACATTGCTGCGCCCGCCCCACTGCCCCCGCATGGTCCAGGACGGCGACTTTGTCCGCTACCACTACAATGGCACCCTGCTGGACGGCACCTCCTTCGACACCAGCTACAGTAAGGGCGGCACTTATGACACCTACGTCGGCTCTGGTTGGCTGATCAAGGGCATGGACCAGGGGCTGCTGGGCATGTGTCCTGGAGAGAGAAGGAAGATTATCATCCCTCCATTCCTGGCCTATGGCGAGAAAGGCTATGGGACAGTGATCCCCCCACAGGCCTCGCTGGTCTTTCACGTCCTCCTGATTGACGTGCACAACCCGAAGGACGCTGTCCAGCTAGAGACGCTGGAGCTCCCCCCCGGCTGTGTCCGCAGAGCCGGGGCCGGGGACTTCATGCGCTACCACTACAATGGCTCCTTGATGGACGGCACCCTCTTCGATTCCAGCTACTCCCGCAACCACACCTACAATACCTATATCGGGCAGGGTTACATCATCCCCGGGATGGACCAGGGGCTGCAGGGTGCCTGCATGGGGGAACGCCGGAGAATTACCATCCCCCCGCACCTCGCCTATGGGGAGAATGGAACTGGAGACAAGATCCCTGGCTCTGCCGTGCTAATCTTCAACGTCCATGTCATTGACTTCCACAACCCTGCGGATGTGGTGGAAATCAGGACACTGTCCCGGCCATCTGAGACCTGCAATGAGACCACCAAGCTTGGGGACTTTGTTCGATACCATTACAACTGTTCTTTGCTGGACGGCACCCAGCTGTTCACCTCGCATGACTACGGGGCCCCCCAGGAGGCGACTCTCGGGGCCAACAAGGTGATCGAAGGCCTGGACACGGGCCTGCAGGGCATGTGTGTGGGAGAGAGGCGGCAGCTCATCGTGCCCCCGCACCTGGCCCACGGGGAGAGTGGAGCCCGGGGAGTCCCAGGCAGTGCTGTGCTGCTGTTTGAGGTGGAGCTGGTGTCCCGGGAGGATGGGCTGCCCACAGGCTACCTGTTTGTGTGGCACAAGGACCCTCCTGCCAACCTGTTTGAAGACATGGACCTCAACAAGGATGGCGAGGTCCCTCCGGAGGAGTTCTCCACCTTCATCAAGGCTCAAGTGAGTGAGGGCAAAGGACGCCTCATGCCTGGGCAGGACCCTGAGAAAACCATAGGAGACATGTTCCAGAACCAGGACCGCAACCAGGACGGCAAGATCACAGTCGACGAGCTCAAGCTGAAGTCAGATGAGGACGAGGAGCGGGTCCACGAGGAGCTCTGA MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQFLSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGRGTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYLLEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMYGAETEKLQKQLASEKEIQMQLQEEL*SQHLGGHRGGCGAPHHWHGPRPHGHVCQRAATPHCASPPGLWEHRPGGAHSTGCHPLLRCGSAGCVEQGRHRAGEHIAAPAPLPPHGPGRRLCPLPLQWHPAGRHLLRHQLQ*GRHL*HLRRLWLADQGHGPGAAGHVSWREKEDYHPSIPGLWRERLWDSDPPTGLAGLSRPPD*RAQPEGRCPARDAGAPPRLCPQSRGRGLHALPLQWLLDGRHPLRFQLLPQPHLQYLYRAGLHHPRDGPGAAGCLHGGTPENYHPPAPRLWGEWNWRQDPWLCRANLQRPCH*LPQPCGCGGNQDTVPAI*DLQ*DHQAWGLCSIPLQLFFAGRHPAVHLA*LRGPPGGDSRGQQGDRRPGHGPAGHVCGREAAAHRAPAPGPRGEWSPGSPRQCCAAV*GGAGVPGGWAAHRLPVCVAQGPSCQPV*RHGPQQGWRGPSGGVLHLHQGSSE*GQRTPHAWAGP*ENHRRHVPEPGPQPGRQDHSRRAQAEVR*GRGAGPRGAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28017 WDTC1::DYM ENSG00000142784.16::ENSG00000141627.14 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 10 TRUE 16 TRUE 6 WDTC1 ENSG00000142784.16 protein_coding + + chr1:27234632-27308636:+ chr1:27261102:+ chr1:27561123-27635127:+ chr1:27587593:+ DYM ENSG00000141627.14 protein_coding - - chr18:49036387-49461347:- chr18:49286613:- chr18:46562757-46987717:- chr18:46812983:- chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262684,chr1:27262243,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230,chr1:27262230 chr18:49307214,chr18:49307261,chr18:49307268,chr18:49307269,chr18:49307277,chr18:49307278,chr18:49307259,chr18:49307231,chr18:49307231,chr18:49307233,chr18:49307236,chr18:49307244,chr18:49307245,chr18:49307250 NA NA chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27589175,chr1:27588734,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721,chr1:27588721 chr18:46833584,chr18:46833631,chr18:46833638,chr18:46833639,chr18:46833647,chr18:46833648,chr18:46833629,chr18:46833601,chr18:46833601,chr18:46833603,chr18:46833606,chr18:46833614,chr18:46833615,chr18:46833620 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40-PARTIAL|41-48~|8e-11^ANAPC4_WD40-PARTIAL|44-48~|0.0001^NBCH_WD40-PARTIAL|44-48~|0.00038 none ["DYM:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr18] 23 23 23 7.67 ONLY_REF_SPLICE YES_LDAS 0.3315 GT 1.9086 AG 1.9329 ENST00000361771.7 1-48 ENST00000675505.1 767-2175 chr1|+|[0]27261055-27261102[2]<==>chr18|-|[2]49044055-49044204[0]|[2]49097402-49097515[0]|[2]49118744-49118926[0]|[2]49163685-49163787[2]|[1]49209551-49209715[2]|[1]49257010-49257104[0]|[2]49258380-49258493[0]|[2]49272178-49272303[0]|[2]49281997-49282175[1]|[0]49286434-49286613[1] atggcgaaagtcaacataactagagacctcatccgtaggcagatcaagGACTCTGGACTGTCTTCACACTAGGTGGTGTGGGCAGCAAAGCGGCTGCCTCTCCAGAGCTTTCTTCCCCTCTGGCCAACCAGAGTCTCCTGCTTCTGCTGGTGTTGGCCAATCTGACAGATGCCTCAGATGCGCCAAACCCCTACAGACAAGCCATTATGTCCTTCAAGAACACACAAGATAGCAGTCCTTTCCCCTCATCAATTCCACATGCCTTCCAGATCAACTTTAATAGTTTGTACACAGCTCTTTGTGAACAGCAGACATCTGATCAAGCAACTCTCCTCTTGTATACCTTGCTCCATCAAAATAGTAATATTAGAACATACATGTTGGCTCGCACAGATATGGAAAATCTTGTTTTACCAATTCTTGAGATTCTGTATCATGTTGAAGAAAGGAATTCACACCATGTGTATATGGCCCTTATAATATTGTTGATCCTTACGGAAGATGATGGCTTCAACAGATCCATTCATGAAGTGATACTAAAAAATATTACTTGGTATTCAGAACGAGTTTTAACTGAAATCTCCTTGGGGAGTCTCCTGATCCTGGTGGTAATAAGAACCATTCAATACAACATGACTAGGACACGAGACAAGTACCTTCACACAAATTGTTTGGCAGCTTTAGCAAATATGTCGGCACAGTTTCGTTCTCTCCATCAGTATGCTGCCCAGAGGATCATCAGTTATACCTGCCGCCACTTGCGGAGATATGTTTATGTGTTGGACAAACTGTATTTCCCCCACTCTCACTGTTCTACGCTTCAGCATTGCTTCTCGACCCTCAGTGACAATGGAGAGGAACTCTTGTCTTTAACTTGCTCTCACATTCTCAGATCCTATGCTTCCAGTTTATTTTCTTTGCTGTCTAAAAAACACAACAAAGTTCTGGAACAAGCCACACAGTCCTTGAGAGGTTCGCTGAGTTCTAATGATGTTCCTCTACCAGATTATGCACAAGACCTAAATGTCATTGAAGAAGTGATTCGAATGATGTTAGAGATCATCAACTCCTGCCTGACAAATTCCCTTCACCACAACCCAAACTTGGTATACGCCCTGCTTTACAAACGCGATCTCTTTGAACAATTTCGAACTCATCCTTCATTTCAGGATATAATGCAAAATATTGATCTGGTGATCTCCTTCTTTAGCTCAAGGTTGCTGCAAGCTGGAGCTGAGCTGTCAGTGGAACGGGTCCTGGAAATCATTAAGCAAGGCGTCGTTGCGCTGCCCAAAGACAGACTGAAGAAATTTCCAGAATTGAAATTCAAATATGTGGAAGAGGAGCAGCCCGAGGAGTTTTTTATCCCCTATGTCTGGTCTCTTGTCTACAACTCAGCAGTCGGCCTGTACTGGAATCCACAGGACATCCAGCTGTTCACCATGGATTCCGACTGA MAKVNITRDLIRRQIKDSGLSSH*VVWAAKRLPLQSFLPLWPTRVSCFCWCWPI*QMPQMRQTPTDKPLCPSRTHKIAVLSPHQFHMPSRSTLIVCTQLFVNSRHLIKQLSSCIPCSIKIVILEHTCWLAQIWKILFYQFLRFCIMLKKGIHTMCIWPL*YC*SLRKMMASTDPFMK*Y*KILLGIQNEF*LKSPWGVS*SWW**EPFNTT*LGHETSTFTQIVWQL*QICRHSFVLSISMLPRGSSVIPAATCGDMFMCWTNCISPTLTVLRFSIASRPSVTMERNSCL*LALTFSDPMLPVYFLCCLKNTTKFWNKPHSP*EVR*VLMMFLYQIMHKT*MSLKK*FE*C*RSSTPA*QIPFTTTQTWYTPCFTNAISLNNFELILHFRI*CKILIW*SPSLAQGCCKLELSCQWNGSWKSLSKASLRCPKTD*RNFQN*NSNMWKRSSPRSFLSPMSGLLSTTQQSACTGIHRTSSCSPWIPT FALSE FALSE NA NA TRUE hsa-mir-4744 chr18:49049687-49049768:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28019 UBE2D2::CXXC5 ENSG00000131508.17::ENSG00000171604.12 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2D2 ENSG00000131508.17 protein_coding + + chr5:139526431-139628434:+ chr5:139561815:+ chr5:138906016-139008019:+ chr5:138941400:+ CXXC5 ENSG00000171604.12 protein_coding + + chr5:139647299-139683882:+ chr5:139680364:+ chr5:139026884-139063467:+ chr5:139059949:+ chr5:139596025,chr5:139596024 chr5:139675117,chr5:139675117 NA NA chr5:138975610,chr5:138975609 chr5:139054702,chr5:139054702 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["UBE2D2:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.02Mb];NEIGHBORS[18866] 17 5 17 5 ONLY_REF_SPLICE YES_LDAS 0.2378 GT 1.6729 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28021 PGAP3::PIPOX ENSG00000161395.14::ENSG00000179761.12 OE19 SRR8615226 SRR8670737 OESOPHAGUS carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 15 FALSE NA FALSE NA PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:29054545:+ chr17:27277531-27384234:+ chr17:27381563:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Per1|54-143|3.4e-31^Per1|133-284|3.3e-44 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.61Mb] 11 3 11 3 ONLY_REF_SPLICE YES_LDAS 0.1513 GT 1.5656 AG 1.8892 ENST00000429199.6 1-432 ENST00000323372.9 661-1173 chr17|-|[2]39684597-39684749[0]|[2]39685922-39686019[1]|[0]39687834-39688014[0]<==>chr17|+|[0]29054545-29054691[2]|[0]29055063-29055221[2]|[0]29055813-29055888[0]|[1]29056175-29056305[2] atggccggcctggcggcgcggttggtcctgctagctggggcagcggcgctggcgagcggctcccagggcgaccgtgagccggtgtaccgcgactgcgtactgcagtgcgaagagcagaactgctctgggggcgctctgaatcacttccgctcccgccagccaatctacatgagtctagcaggctggacctgtcgggacgactgtaagtatgagtgtatgtgggtcaccgttgggctctacctccaggaaggtcacaaagtgcctcagttccatggcaagtggcccttctcccggttcctgttctttcaagagccggcatcggccgtggcctcgtttctcaatggcctggccagcctggtgatgctctgccgctaccgcaccttcgtgccagcctcctcccccatgtaccacacctgtgtggccttcgcctggACCCTGCGGATCAACGTGTGTTACTGGCGAGAGATGGTTCCTGGGAGCTATGGTGTGTCCCAGGCCTTTCCGTGCTTCCTGTGGCTGGGCTTGTGTCCCCACCACATCTACGGACTGCCCACAGGAGAGTACCCAGGGCTGATGAAGGTCAGCTATCACCACGGCAACCACGCAGACCCTGAGGAGCGGGACTGCCCCACAGCACGCACAGACATCGGAGACGTCCAGATCCTGAGCAGCTTTGTCAGAGATCACTTACCTGATCTGAAGCCCGAGCCTGCTGTCATTGAGAGCTGCATGTACACGAATACCCCTGATGAGCAGTTCATTCTCGATCGCCACCCAAAGTATGACAACATTGTCATTGGTGCTGGATTCTCTGGGCACGGGTTCAAGCTGGCCCCTGTGGTGGGGAAGATCCTGTATGAATTAAGCATGAAATTAACACCATCTTATGACTTGGCACCTTTTCGAATCAGCCGTTTCCCAAGCCTGGGCAAAGCCCACCTTTGA MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWTLRINVCYWREMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILDRHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMKLTPSYDLAPFRISRFPSLGKAHL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28024 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 16 TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447378:- chr22:19338891-19435234:- chr22:19434901:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19458139:- chr22:19437434-19466725:- chr22:19445662:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3128|11-65|1.1e-16 none ["CCLE_StarF2019"] 293 229 293 229 ONLY_REF_SPLICE YES_LDAS 8.5189 GT 1.5656 AG 1.9899 ENST00000509549.5 1-192 ENST00000263202.15 496-924 chr22|-|[2]19447378-19447545[0]|[2]19447665-19447688[0]<==>chr22|-|[2]19450670-19450744[0]|[2]19454749-19454830[2]|[1]19455680-19455768[0]|[2]19456587-19456634[0]|[2]19456853-19456918[0]|[2]19458071-19458139[0] atggcggacggcagcggctggcagccgccgcgcccctgcgaggcctaccgcgccgagtggaagctctgccgcagcgccaggcacttcctacaccactactacgtccacggcgagcggccggcctgcgaacagtggcagcgcgacctggccagctgccgcgactgggaggagcgccggaacgccgaggcccagATCTACGAACTGCGTGTGATGGAGACCAAACCCGACAAGGCAGTGTCCATCATTGAGTGTGACATGAACGTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACAGAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGCGCTTTCTCTGGATCTGGCAATAGACTGGATGGAAAGAAGAAAGGGGTAGAGCCCAGCCCCTCCCCAATCAAGCCTGGAGATATTAAAAGAGGAATTCCCAATTATGAATTTAAACTTGGTAAGATAACTTTCATCAGAAATTCACGTCCCCTTGTCAAAAAGGTTGAAGAGGATGAAGCTGGAGGCAGATTCGTCGCTTTCTCTGGAGAAGGACAGTCATTGCGTAAAAAGGGAAGAAAGCCCTAA MADGSGWQPPRPCEAYRAEWKLCRSARHFLHHYYVHGERPACEQWQRDLASCRDWEERRNAEAQIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSLRKKGRKP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28025 MROH1::EXOSC4 ENSG00000179832.18::ENSG00000178896.9 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MROH1 ENSG00000179832.18 protein_coding + + chr8:144148016-144261927:+ chr8:144163848:+ chr8:145202919-145316830:+ chr8:145218751:+ EXOSC4 ENSG00000178896.9 protein_coding + + chr8:144078648-144080648:+ chr8:144080242:+ chr8:145133551-145135551:+ chr8:145135145:+ chr8:144167572,chr8:144167593,chr8:144167567 chr8:144080209,chr8:144080209,chr8:144080195 NA NA chr8:145222475,chr8:145222496,chr8:145222470 chr8:145135112,chr8:145135112,chr8:145135098 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CEP104-like_TOG-PARTIAL|3-22~|0.00047^RTP1_C1-PARTIAL|4-22~|0.0024^HEAT_2-PARTIAL|7-22~|2e-05^Cnd1-PARTIAL|7-22~|0.061^PDS5-PARTIAL|8-22~|1.2^HEAT_EZ-PARTIAL|9-22~|0.035^HEAT-PARTIAL|12-22~|0.00019^Maestro_HEAT-PARTIAL|13-22~|0.57^Arm-PARTIAL|13-22~|0.003 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.07Mb];LOCAL_REARRANGEMENT:+:[67369] 153 55 153 55 ONLY_REF_SPLICE YES_LDAS 3.3945 GT 1.9656 AG 1.9656 ENST00000326134.10 1-22 ENST00000525936.1 251-471 chr8|+|[0]144163827-144163848[0]<==>chr8|+|[1]144080242-144080462[2] atgactgagtcctccatgaagaGTGCTACAGGCAGATGGTGGGACCTATGCAGCTTGTGTGAATGCAGCCACGCTGGCAGTGCTGGATGCCGGGATACCCATGAGAGACTTTGTGTGTGCGTGCTCAGCTGGCTTCGTGGACGGCACAGCCCTGGCGGACCTCAGCCATGTGGAGGAAGCAGCTGGTGGCCCCCAGCTGGCCCTGGCCCTGCTGCCAGCCTCAGGACAGATTGCGCTGCTTGA MTESSMKSATGRWWDLCSLCECSHAGSAGCRDTHERLCVCVLSWLRGRHSPGGPQPCGGSSWWPPAGPGPAASLRTDCAA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28026 KIAA1671::SGSM1 ENSG00000197077.14::ENSG00000167037.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 20 FALSE NA FALSE NA KIAA1671 ENSG00000197077.14 protein_coding + + chr22:24952716-25197448:+ chr22:24952772:+ chr22:25348683-25593415:+ chr22:25348739:+ SGSM1 ENSG00000167037.19 protein_coding + + chr22:24806169-24927578:+ chr22:24905105:+ chr22:25202136-25323545:+ chr22:25301072:+ chr22:24970011,chr22:24970009 chr22:24903418,chr22:24903413 NA NA chr22:25365978,chr22:25365976 chr22:25299385,chr22:25299380 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.03Mb];LOCAL_REARRANGEMENT:+:[25152] 54 0 54 0 ONLY_REF_SPLICE YES_LDAS 0.8813 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28027 C22orf39::UFD1 ENSG00000242259.9::ENSG00000070010.19 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 17 TRUE 29 TRUE 9 C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19447665:- chr22:19338891-19435234:- chr22:19435188:- UFD1 ENSG00000070010.19 protein_coding - - chr22:19449911-19479202:- chr22:19458139:- chr22:19437434-19466725:- chr22:19445662:- chr22:19442868,chr22:19442872 chr22:19458412,chr22:19458413 NA NA chr22:19430391,chr22:19430395 chr22:19445935,chr22:19445936 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3128-PARTIAL|11-24~|1.1e-16 none ["CCLE_StarF2019"] 38 0 38 0 ONLY_REF_SPLICE YES_LDAS 0.6201 GT 1.6402 AG 1.9899 ENST00000509549.5 1-24 ENST00000263202.15 496-924 chr22|-|[2]19447665-19447688[0]<==>chr22|-|[2]19450670-19450744[0]|[2]19454749-19454830[2]|[1]19455680-19455768[0]|[2]19456587-19456634[0]|[2]19456853-19456918[0]|[2]19458071-19458139[0] atggcggacggcagcggctggcagATCTACGAACTGCGTGTGATGGAGACCAAACCCGACAAGGCAGTGTCCATCATTGAGTGTGACATGAACGTGGACTTTGATGCTCCCCTGGGCTACAAAGAACCCGAAAGACAAGTCCAGCATGAGGAGTCGACAGAAGGTGAAGCCGACCACAGTGGCTATGCTGGAGAGCTGGGCTTCCGCGCTTTCTCTGGATCTGGCAATAGACTGGATGGAAAGAAGAAAGGGGTAGAGCCCAGCCCCTCCCCAATCAAGCCTGGAGATATTAAAAGAGGAATTCCCAATTATGAATTTAAACTTGGTAAGATAACTTTCATCAGAAATTCACGTCCCCTTGTCAAAAAGGTTGAAGAGGATGAAGCTGGAGGCAGATTCGTCGCTTTCTCTGGAGAAGGACAGTCATTGCGTAAAAAGGGAAGAAAGCCCTAA MADGSGWQIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGELGFRAFSGSGNRLDGKKKGVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRPLVKKVEEDEAGGRFVAFSGEGQSLRKKGRKP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28029 UTRN::STX11 ENSG00000152818.20::ENSG00000135604.11 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144291907:+ chr6:144606471-145174170:+ chr6:144613043:+ STX11 ENSG00000135604.11 protein_coding + + chr6:144150487-144191939:+ chr6:144186623:+ chr6:144471624-144513076:+ chr6:144507760:+ chr6:144310853,chr6:144310850 chr6:144169560,chr6:144169554 NA NA chr6:144631989,chr6:144631986 chr6:144490697,chr6:144490691 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.10Mb];LOCAL_REARRANGEMENT:+:[97331] 20 11 20 10.64 ONLY_REF_SPLICE YES_LDAS 0.5 GT 1.9656 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28032 NSMF::EXD3 ENSG00000165802.23::ENSG00000187609.16 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NSMF ENSG00000165802.23 protein_coding - - chr9:137447570-137459334:- chr9:137449923:- chr9:140342022-140353786:- chr9:140344375:- EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137324143:- chr9:140201348-140317663:- chr9:140218595:- chr9:137449794 chr9:137328479 NA NA chr9:140344246 chr9:140222931 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame IQ|237-247|0.035^IQ|253-266|0.0004^DUF4347|350-482|1.5e-06^IQ|510-520|0.52 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.02Mb];NEIGHBORS[24308] 13 10 13 10 ONLY_REF_SPLICE YES_LDAS 0.3754 GT 1.7819 AG 1.8295 ENST00000371475.9 1-1419 ENST00000340951.9 1999-2631 chr9|-|[2]137449923-137450025[2]|[1]137450176-137450255[0]|[2]137452365-137452435[1]|[0]137452553-137452586[0]|[2]137452736-137452819[0]|[2]137453056-137453180[1]|[0]137453731-137453820[1]|[0]137454391-137454443[2]|[1]137455239-137455307[2]|[1]137455629-137455634[2]|[1]137456411-137456486[1]|[0]137457407-137457901[1]|[0]137458488-137458549[2]|[1]137459032-137459102[0]<==>chr9|-|[2]137306950-137307263[1]|[0]137307608-137307646[1]|[0]137309607-137309700[0]|[2]137323725-137323856[0]|[2]137324090-137324143[0] atgggcgccgccgcctccaggaggagggcgctgaggagcgaggccatgtcctcggtggcggccaaagtgcgagcagcccgagcgtttggagagtacctgtcccagagtcaccctgagaaccgcaacggcgcagatcacctgctggctgatgcctactctggccacgacgggtcccccgagatgcagccggccccccagaacaagcgccgcctgtccctcgtctccaacggctgctacgagggcagcctctcagaggagcccagcattaggaagcccgcaggcgagggccctcagcctcgagtgtacaccatctctggggagcctgccctgctgcccagccctgaggcggaggccattgagctggcggtggtgaaggggcggcggcagcggcaccctcaccatcacagccagcccctgcgcgccagccctggtggcagccgggaggacgtcagcaggccctgccagagctgggcgggcagccgccagggctccaaggagtgccccggatgtgcccagctggctcctggccccacccctcgggcctttgggctggaccagccacctctgcctgagacctccggtcgccgcaagaagctggagaggatgtacagcgttgaccgtgtgtctgacgacatccctattcgtacctggttccccaaggaaaatcttttcagcttccagacagcaaccacaactatgcaagccatctcggtgttcaggggctacgcggagaggaagcgccggaaacgggagaatgattccgcgtctgtaatccagaggaacttccgcaaacacctgcgcatggtcggcagccggagggtgaaggcccagacgttcgctgagcggcgcgagcggagcttcagccggtcctggagcgaccccacccccatgaaagccgacacttcccacgactcccgagacagcagtgacctgcagagctcccactgcacgctggacgaggccttcgaggacctggactgggacactgagaagggcctggaggctgtggcctgcgacaccgaaggcttcgtgccaccaaaggtcatgctcatttcctccaaggtgcccaaggctgagtacatccccactatcatccgccgggatgacccctccatcatccccatcctctacgaccatgagcacgcaaccttcgaggacatccttgaggagatagagaggaagctgaacgtctaccacaagggagccaagatctggaaaatgctgattttctgccagggaggtcctggacacctctatctcctcaagaacaaggtggccacctttgccaaagtggagaaggaagaggacatgattcacttctggaagcggctgagccgcctgatgagcaaagtgaacccagagccgaacgtcatccacatcatgggctgctacattctggggaaccccaatggagagaagGTTGCCAGGCAGGAGGGGAGGATCATTCTGACGTCGGGGCAGCCATTCCACAAGCTCCGGGCCCAGGTCGGGGCTGGGCGCTGCCTCTCGGTCGACTGCTCCCTGAAGGCCCAGCAGCAGGCCAAGGCTGTGCTCAAGCATTTCAACGTGCGTGTCACCCACGCAGACATCTTCAGCCGCTGCCAGGCCTGTAACTGTGACCAGTACCTAAAGGTCTCCAGGGACATGATGAAGCAGCTCATGTGGCTCAGCAGTCACCAGGAGGGGCCCAGGAGCTCAGGTGACGAGGCCACCCAGAGCCAGGCGGTGCAGGAGCCAGGCCCAGCCCCAGACGCAGCCCCTGAGGGCTGCACCTATGACCGCCCCTGCCGCTGGCTGCAGATGGCTGACCTGCGGGCGGAGACACCGGACATGCTGGCCGACGGCACCCGGCTGCAGCTGGCAGGGGTCCCGGTGGGTGTGCTGAGGACACCTGGGCTGCGGTGCTTCTACTGCTGCACGGGCTGTGGAAAGGTCTTCTGGGACGGCTCCCACCTGGGTCGTGTTGCCACCCACTTCCGAGACATGCTGGAGAGCGCCCCCAGCCCCTGCGAGCCGAGCCCAGCCCCCAGCCCGGCCAGCAGTCCCTTCTGA MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRRLSLVSNGCYEGSLSEEPSIRKPAGEGPQPRVYTISGEPALLPSPEAEAIELAVVKGRRQRHPHHHSQPLRASPGGSREDVSRPCQSWAGSRQGSKECPGCAQLAPGPTPRAFGLDQPPLPETSGRRKKLERMYSVDRVSDDIPIRTWFPKENLFSFQTATTTMQAISVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQTFAERRERSFSRSWSDPTPMKADTSHDSRDSSDLQSSHCTLDEAFEDLDWDTEKGLEAVACDTEGFVPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHEHATFEDILEEIERKLNVYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSKVNPEPNVIHIMGCYILGNPNGEKVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAPEGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPGLRCFYCCTGCGKVFWDGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSPF* FALSE TRUE hsa-mir-7114 chr9:137450026-137450086:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28035 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:212528090,chr2:212528095,chr2:212480452 chr2:212583054,chr2:212583056,chr2:212716407 NA NA chr2:213392814,chr2:213392819,chr2:213345176 chr2:213447778,chr2:213447780,chr2:213581131 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB4:ArcherDX_panel","ERBB4:FoundationOne_panel","ERBB4:Oncogene"] 6 1 6 1 ONLY_REF_SPLICE YES_LDAS 0.1142 GT 1.9899 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 28037 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 MFE319 SRR8615235 SRR8652121 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 19 FALSE NA FALSE NA KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245156683:+ chr1:245318287-245872734:+ chr1:245319985:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245059386:+ chr1:245132984-245290466:+ chr1:245222688:+ chr1:245337092,chr1:245337093 chr1:245047333,chr1:245047331 NA NA chr1:245500394,chr1:245500395 chr1:245210635,chr1:245210633 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none EF-hand_7-PARTIAL|~111-157|3.8e-14^EF-hand_6-PARTIAL|~111-123|7.1e-07^EF-hand_9-PARTIAL|~111-158|6.3e-07^EF-hand_1-PARTIAL|~111-122|0.00015^EF-hand_8-PARTIAL|~111-123|5.1e-05^EFhand_Ca_insen-PARTIAL|~111-157|1.2e-05^Dpoe2NT-PARTIAL|~111-142|3.5e-05^RNase_PH_C|113-141|0.0001^AIF-1|117-158|6.2e-05^EF-hand_8|128-158|0.092^EF-hand_6|129-138|3.2^EF-hand_1|130-138|2.6^EF-hand_1|146-157|0.49 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[27821] 6 4 6 3.4 ONLY_REF_SPLICE YES_LDAS 0.1534 GT 1.7968 AG 1.7465 ENST00000407071.7 1-465 ENST00000366523.6 111-489 chr1|+|[0]245155425-245155487[2]|[0]245156282-245156683[2]<==>chr1|+|[2]245059386-245059458[2]|[0]245082083-245082162[1]|[2]245083442-245083484[2]|[0]245083622-245083688[0]|[1]245087245-245087360[2] atgaattcggtagctgggaataaagagaggcttgcggtctccaccaggggcaagaaatacggggtgaatgaagtctgctcgcccaccaagcccgcagcgcccttctccccggaaagctggtaccggaaagcatacgaggagtcgcgcgccggcagccggcccactcctgagggcgcgggctcagcgctcggctcctcggggaccccgtctcccggctcgggcacctcgtccccgagctcgttcaccggctccccgggacccgcctcccccggcatcggcactagttcgccgggctccttgggcggctctccgggcttcggcacaggctccccgggctccggcagcggcggcggctcctcccccggctcggaccgcggcgtctggtgcgagaactgcaacgcccgcctggtggagctcaagaggcaggccctgaggttgctcctcccggggcccttcccgggcaagAGAGATTGGAACAATTATCAGGTCATTAGGATGCTGTCCTACGGAAGGAGAGCTGCATGATCTGATTGCAGAGGTAGAGGAAGAAGAACCCACTGGATACATTCGATTCGAAAAATTTCTTCCGGTGATGACAGAAATACTACTAGAAAGAAAATACAGACCAATTCCAGAAGATGTCCTTCTTCGAGCTTTTGAGGTTTTAGATTCAGCTAAACGTGGGTTTCTTACTAAGGACGAGCTGATCAAGTATATGACTGAAGAAGGTGAGCCTTTTTCTCAAGAGGAAATGGAAGAAATGTTGTCTGCTGCAATTGATCCAGAATCAAATTCAATTAATTACAAGGACTATATAACAATGATGGTGATAGATGAAAATTAA MNSVAGNKERLAVSTRGKKYGVNEVCSPTKPAAPFSPESWYRKAYEESRAGSRPTPEGAGSALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGTSSPGSLGGSPGFGTGSPGSGSGGGSSPGSDRGVWCENCNARLVELKRQALRLLLPGPFPGKRDWNNYQVIRMLSYGRRAA*SDCRGRGRRTHWIHSIRKISSGDDRNTTRKKIQTNSRRCPSSSF*GFRFS*TWVSY*GRADQVYD*RR*AFFSRGNGRNVVCCN*SRIKFN*LQGLYNNDGDR*KL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28044 KDM2A::SYT12 ENSG00000173120.15::ENSG00000173227.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67121358:+ chr11:66886734-67025553:+ chr11:66888829:+ SYT12 ENSG00000173227.14 protein_coding + + chr11:67006778-67050863:+ chr11:67021869:+ chr11:66774249-66818334:+ chr11:66789340:+ chr11:67143035,chr11:67143034,chr11:67143035 chr11:67016183,chr11:67016180,chr11:67016180 NA NA chr11:66910506,chr11:66910505,chr11:66910506 chr11:66783654,chr11:66783651,chr11:66783651 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr11:0.07Mb];LOCAL_REARRANGEMENT:+:[68406] 117 36 117 36 ONLY_REF_SPLICE YES_LDAS 2.0541 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-6860 chr11:67045643-67045708:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Glioblastoma multiforme,Breast invasive carcinoma,Stomach adenocarcinoma CENTRAL_NERVOUS_SYSTEM,BREAST,STOMACH no_match 66999431,66888829|66888829,66888829|66888829 FALSE,TRUE|TRUE,TRUE|TRUE 66812064,66777350|66789340,66797593|66807282 FALSE,FALSE|TRUE,FALSE|FALSE YES,PARTIALLY,PARTIALLY In-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28045 RGL3::ECSIT ENSG00000205517.13::ENSG00000130159.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 22 FALSE NA FALSE NA RGL3 ENSG00000205517.13 protein_coding - - chr19:11384341-11419328:- chr19:11415937:- chr19:11495017-11530004:- chr19:11526613:- ECSIT ENSG00000130159.15 protein_coding - - chr19:11505929-11529172:- chr19:11506428:- chr19:11616744-11639987:- chr19:11617243:- chr19:11407108,chr19:11407115 chr19:11507137,chr19:11507141 NA NA chr19:11517784,chr19:11517791 chr19:11617952,chr19:11617956 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RasGEF_N|69-164|5.6e-18^RasGEF|250-453|1.7e-57^RA-PARTIAL|621-637~|2.6e-14 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.09Mb];LOCAL_REARRANGEMENT:-:[86574] 113 62 113 62 ONLY_REF_SPLICE YES_LDAS 2.3495 GT 1.9219 AG 1.8295 ENST00000393423.7 1-637 ENST00000417981.6 410-654 chr19|-|[0]11415937-11416148[2]|[1]11416614-11416667[2]|[1]11416836-11417059[0]|[2]11418671-11418784[0]|[2]11419246-11419278[0]<==>chr19|-|[2]11506184-11506428[1] atggagcgcacagcaggcaaagagctggccctggcaccgctgcaggactggggtgaagagaccgaggacggcgcggtgtacagtgtctccctgcggcggcagcgcagtcagcgcaggagcccggcggagggccccgggggcagccaggctcccagccccattgccaataccttcctccactatcgaaccagcaaggtgagggtgctgagggcagcgcgcctggagcggctggtgggagagttggtgtttggagaccgtgagcaggaccccagcttcatgcccgccttcctggccacctaccggacctttgtacccactgcctgcctgctgggctttctgctgccaccaatgccaccgcccccacctcccggggtagagatcaagaagacagcggtacaagatctgagcttcaacaagaacctgagggctgtggtgtcagtgctgggctcctggctgcaggaccaccctcaggatttccgagaccaccctgcccattcggacctgggcagtgtccgaacctttctgggctgggcggccccagggagtgctgaggctcaaaaagcagagaagcttctggaagattttttggaggaggctgagcgagagcaggaagaggagccgcctcaggtgtggacagTGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGATCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCACCCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGACGACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAG MERTAGKELALAPLQDWGEETEDGAVYSVSLRRQRSQRRSPAEGPGGSQAPSPIANTFLHYRTSKVRVLRAARLERLVGELVFGDREQDPSFMPAFLATYRTFVPTACLLGFLLPPMPPPPPPGVEIKKTAVQDLSFNKNLRAVVSVLGSWLQDHPQDFRDHPAHSDLGSVRTFLGWAAPGSAEAQKAEKLLEDFLEEAEREQEEEPPQVWTVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEEDDNLQRQQQGQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 11510531 FALSE 11617243 TRUE YES CDS-3UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28046 CDC42::CELA3A ENSG00000070831.18::ENSG00000142789.20 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 24 FALSE NA FALSE NA CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22078583:+ chr1:22379120-22427853:+ chr1:22405076:+ CELA3A ENSG00000142789.20 protein_coding + + chr1:22001657-22012542:+ chr1:22003003:+ chr1:22328150-22339035:+ chr1:22329496:+ chr1:22078796,chr1:22078793 chr1:22002827,chr1:22002821 NA NA chr1:22405289,chr1:22405286 chr1:22329320,chr1:22329314 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Arf-PARTIAL|2-105~|9e-11^GTP_EFTU|3-20|0.12^Ras-PARTIAL|5-105~|6.1e-55^Roc-PARTIAL|5-105~|3.4e-23^GTP_EFTU-PARTIAL|46-105~|1.9e-06 Trypsin-PARTIAL|~44-263|6.9e-72^Trypsin_2|60-221|1.4e-08 ["CDC42:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.04Mb];LOCAL_REARRANGEMENT:+:[40088] 97 29 89.91 26.2 ONLY_REF_SPLICE YES_LDAS 1.5588 GT 1.9656 AG 1.8892 ENST00000695860.1 1-105 ENST00000290122.8 44-813 chr1|+|[0]22078479-22078583[2]<==>chr1|+|[1]22003003-22003088[2]|[0]22005447-22005544[1]|[2]22005662-22005796[1]|[2]22006878-22007014[0]|[1]22007373-22007515[2]|[0]22009705-22009857[2]|[0]22012450-22012467[2] atgcagacaattaagtgtgttgttgtgggcgatggtgctgttggtaaaacatgtctcctgatatcctacacaacaaacaaatttccatcggaatatgtaccgactCCTCAGGCTATGGCCCACCTTCCTCTCACTCTTCCAGCCGCGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTTTCCCTGCAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTCGAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGGCAATGACATCGCCCTCATCAAGCTCTCACGCAGCGCCCAGCTGGGAGATGCCGTCCAGCTCGCCTCACTCCCTCCCGCTGGTGACATCCTTCCCAACAAGACACCCTGCTACATCACCGGCTGGGGCCGTCTCTATACCAATGGGCCACTCCCAGACAAGCTGCAGCAGGCCCGGCTGCCCGTGGTGGACTATAAGCACTGCTCCAGGTGGAACTGGTGGGGTTCCACCGTGAAGAAAACCATGGTGTGTGCTGGAGGGTACATCCGCTCCGGCTGCAACGGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCACGGTGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACTTCATCTGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATCGACTGGATTGAGGAGACCATAGCAAGCCACTAG MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTPQAMAHLPLTLPAALSMVRMRSPTAGPGRFPCSMRKVEASTTRVAVASSPPIGL*LPATASRGI*PTRWCWVSTTLL*RRAPSR*SPSTLRSCLCIHSGTARVWPVAMTSPSSSSHAAPSWEMPSSSPHSLPLVTSFPTRHPATSPAGAVSIPMGHSQTSCSRPGCPWWTISTAPGGTGGVPP*RKPWCVLEGTSAPAATVTLEDPSTAPQRMVAGRSTV*PALFLPLAATSSGSPRCSLESPPSSTGLRRP*QAT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28048 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 25 TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73759763:- chr14:74181825-74256988:- chr14:74226466:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14921918:+ chr3:14852360-14976078:+ chr3:14963425:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 77 30 77 23.79 ONLY_REF_SPLICE YES_LDAS 1.3531 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28049 MIDEAS::FGD5 ENSG00000156030.14::ENSG00000154783.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 26 TRUE 51 TRUE 21 MIDEAS ENSG00000156030.14 protein_coding - - chr14:73715122-73790285:- chr14:73787102:- chr14:74181825-74256988:- chr14:74253805:- FGD5 ENSG00000154783.12 protein_coding + + chr3:14810853-14934571:+ chr3:14921918:+ chr3:14852360-14976078:+ chr3:14963425:+ chr14:73757935,chr14:73757938 chr3:14921545,chr3:14921542 NA NA chr14:74224638,chr14:74224641 chr3:14963052,chr3:14963049 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 65 15 65 6.21 ONLY_REF_SPLICE YES_LDAS 0.956 GT 1.8256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28050 EPIC1::ATXN10 ENSG00000224271.8::ENSG00000130638.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 27 FALSE NA FALSE NA EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:47635353:+ chr22:48026576-48418772:+ chr22:48031102:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45806959:+ chr22:46067678-46241187:+ chr22:46202839:+ chr22:47636277,chr22:47636275 chr22:45799496,chr22:45799491 NA NA chr22:48032026,chr22:48032024 chr22:46195376,chr22:46195371 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 58 34 58 34 ONLY_REF_SPLICE YES_LDAS 1.2352 GT 1.6402 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28051 MGAT4A::LINC02611 ENSG00000071073.13::ENSG00000226791.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MGAT4A ENSG00000071073.13 protein_coding - - chr2:98619106-98731132:- chr2:98678304:- chr2:99235569-99347595:- chr2:99294767:- LINC02611 ENSG00000226791.9 lncRNA - - chr2:98761098-98775361:- chr2:98769046:- chr2:99377561-99391824:- chr2:99385509:- chr2:98676745,chr2:98676748 chr2:98769969,chr2:98769969 NA NA chr2:99293208,chr2:99293211 chr2:99386432,chr2:99386432 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 55 20 55 20 ONLY_REF_SPLICE YES_LDAS 1.0069 GT 1.7819 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28052 CHMP6::RPTOR ENSG00000176108.9::ENSG00000141564.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 28 FALSE NA FALSE NA CHMP6 ENSG00000176108.9 protein_coding + + chr17:80991598-81009517:+ chr17:80998420:+ chr17:78965398-78983317:+ chr17:78972220:+ RPTOR ENSG00000141564.16 protein_coding + + chr17:80544819-80966371:+ chr17:80957624:+ chr17:78518619-78940171:+ chr17:78931424:+ chr17:80999721,chr17:80999720 chr17:80953967,chr17:80953963 NA NA chr17:78973521,chr17:78973520 chr17:78927767,chr17:78927763 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Het-C|2-135|8.7e-05^GrpE|11-129|0.00057^Peptidase_S46|17-151|8.3e-05^Snf7|18-177|3.8e-46^Cas_Cas1|25-101|0.00027 none ["RPTOR:FoundationOne_panel","RPTOR:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.03Mb];LOCAL_REARRANGEMENT:+:[25227] 53 37 53 37 ONLY_REF_SPLICE YES_LDAS 1.2082 GT 1.9329 AG 1.5546 ENST00000325167.9 1-550 ENST00000306801.8 3371-4008 chr17|+|[0]80991919-80991981[2]|[0]80994581-80994690[1]|[2]80995019-80995106[2]|[0]80995672-80995758[2]|[0]80997007-80997072[2]|[0]80997261-80997341[2]|[0]80998366-80998420[0]<==>chr17|+|[1]80957624-80957730[2]|[0]80960078-80960205[1]|[2]80961394-80961480[1]|[2]80962461-80962577[1]|[2]80962928-80963057[2]|[0]80964262-80964330[2] atgggtaacctgttcggccgcaagaagcagagccgcgtcacggagcaggacaaggccatcctgcaactgaagcagcagcgggacaagctgaggcagtaccagaagaggatcgcccagcagctggagcgcgagcgcgccctggcccggcagctgctgcgggacggcaggaaggaacgggccaagctgctgctcaagaagaagcgataccaggagcagctcctggacaggacggagaaccagatcagcagcctggaggccatggttcagagtattgagttcacccagatcgaaatgaaagtgatggaggggctgcagtttggaaatgagtgtctgaacaagatgcaccaggtgatgtccattgaagaggtggagaggatcctggacgagacgcaggaggccgtggagtaccagcggcaaatagacgagctcctggcaggaagcttcactcaggaggatgaagacgccatcctggaggagctgagcgcaatcactcaggaacaaatagagctgccagaggttccctccgagccccttcctgagaagatcccagGAGCTGGGATGGTGGTGGACTGGGAGCAGGAGACCGGCCTCCTCATGAGCTCAGGAGACGTGCGGATCGTCCGGATCTGGGACACAGACCGTGAGATGAAGGTGCAGGACATCCCTACGGGCGCAGACAGCTGTGTGACGAGTCTGTCCTGTGATTCCCACCGCTCACTCATCGTGGCTGGCCTCGGTGACGGCTCCATCCGCGTCTACGACAGAAGGATGGCACTCAGCGAATGCCGCGTCATGACGTACCGGGAGCACACAGCCTGGGTGGTGAAGGCCTCCCTGCAGAAGCGTCCCGACGGCCACATCGTGAGTGTGAGCGTCAATGGAGATGTGCGCATCTTTGATCCCCGGATGCCTGAGTCGGTAAATGTGCTTCAGATCGTGAAGGGGCTGACGGCCCTGGACATCCACCCCCAGGCGGACCTGATCGCATGTGGCTCCGTCAATCAGTTCACCGCCATCTACAACAGCAGCGGAGAGCTCATCAACAACATCAAGTACTACGACGGCTTCATGGGCCAGCGGGTCGGCGCCATCAGCTGCCTGGCCTTCCACCCGCACTGGCCTCACCTGGCCGTGGGAAGCAACGACTACTACATCTCCGTGTACTCGGTGGAGAAGCGTGTCAGATAG MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQEQIELPEVPSEPLPEKIPGAGMVVDWEQETGLLMSSGDVRIVRIWDTDREMKVQDIPTGADSCVTSLSCDSHRSLIVAGLGDGSIRVYDRRMALSECRVMTYREHTAWVVKASLQKRPDGHIVSVSVNGDVRIFDPRMPESVNVLQIVKGLTALDIHPQADLIACGSVNQFTAIYNSSGELINNIKYYDGFMGQRVGAISCLAFHPHWPHLAVGSNDYYISVYSVEKRVR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28053 COPB2::COL26A1 ENSG00000184432.11::ENSG00000160963.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 29 FALSE NA FALSE NA COPB2 ENSG00000184432.11 protein_coding - - chr3:139353946-139389736:- chr3:139358998:- chr3:139072788-139108578:- chr3:139077840:- COL26A1 ENSG00000160963.14 protein_coding + + chr7:101362875-101559024:+ chr7:101549171:+ chr7:101006156-101202304:+ chr7:101192452:+ chr3:139358800,chr3:139358803 chr7:101549027,chr7:101549024 NA NA chr3:139077642,chr3:139077645 chr7:101192308,chr7:101192305 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|9-43|5e-06^ANAPC4_WD40|13-55|0.037^WD40_2|23-101|0.00039^BBS2_Mid|27-47|0.13^WD40|48-85|6.1e-05^ANAPC4_WD40|58-106|0.0048^BBS2_Mid|69-113|0.0018^NBCH_WD40|72-127|0.00024^MetallophosC|75-149|0.00055^WD40|91-127|9.2e-12^WD40|132-170|2e-09^NBCH_WD40|145-172|0.18^ANAPC4_WD40|168-237|0.0032^WD40|177-215|1.2e-10^BBS2_Mid|198-260|0.011^NBCH_WD40|199-262|3.9e-07^MetallophosC|204-237|0.31^WD40|220-256|2.7e-14^ANAPC4_WD40|224-277|0.00057^WD40_2|238-297|0.02^WD40|273-295|1.9^Coatomer_WDAD|319-762|3.1e-174^ANAPC4_WD40|357-379|0.67^WD40|358-373|0.013^ANAPC4_WD40|386-417|0.43^ANAPC4_WD40|467-484|0.2^Helicase_dom4_arc|505-530|0.87^Helicase_dom4_arc|786-817|5.8e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr7] 52 16 52 16 ONLY_REF_SPLICE YES_LDAS 0.9129 GT 1.8892 AG 1.4566 ENST00000333188.10 1-2484 ENST00000313669.12 941-1326 chr3|-|[2]139358998-139359178[2]|[1]139359270-139359362[2]|[1]139361081-139361295[0]|[2]139362407-139362517[0]|[2]139366568-139366775[2]|[1]139367015-139367145[0]|[2]139368145-139368288[0]|[2]139369261-139369367[1]|[0]139369456-139369544[2]|[1]139371723-139371833[2]|[1]139373213-139373412[0]|[2]139373666-139373808[1]|[0]139374489-139374588[0]|[2]139375468-139375614[0]|[2]139378041-139378189[1]|[0]139379047-139379173[0]|[2]139379380-139379466[0]|[2]139383298-139383435[0]|[2]139389548-139389550[0]<==>chr7|+|[1]101549171-101549223[2]|[0]101551108-101551143[2]|[0]101553326-101553376[2]|[0]101555787-101555871[0]|[1]101557370-101557530[2] atgcctctgcgacttgatatcaaaagaaagctaactgctagatctgatcgagttaagagtgtggatctgcatcctacagagccatggatgttggcaagtctttacaatggcagtgtgtgtgtttggaatcatgaaacacagacactggtgaagacatttgaagtatgtgatcttcctgttcgagctgcaaagtttgttgcaaggaagaattgggttgtgacaggagcggatgacatgcagattagagtgttcaattacaatactctggagagagttcatatgtttgaagcacactcagactacattcgctgtattgctgttcatccaacccagcctttcattctaactagcagtgatgacatgcttattaagctctgggactgggataaaaaatggtcttgctcacaagtgtttgaaggacacacccattatgttatgcagattgtgatcaaccccaaagataacaatcagtttgccagtgcctctttggacaggactatcaaggtgtggcagttgggctcttcgtcaccaaacttcactttggaaggacatgagaaaggcgtgaattgcattgattactacagtggtggggacaagccatacctcatttcaggtgcagatgaccgtcttgttaaaatatgggattatcagaataaaacatgtgtgcagacactggaaggacatgcccaaaatgtgtcttgtgccagctttcatcctgagttgccaatcattatcacaggttcagaagatggaacagtacgtatttggcattcaagcacctaccggcttgagagcacactgaattatggaatggagagggtatggtgcgtggccagtctaagagggtcaaacaatgtcgctttgggctatgatgaagggagcatcattgttaagcttggtcgggaggaacctgccatgtccatggatgccaatggaaagataatttgggccaagcattcagaagtccagcaggccaacctaaaagcaatgggagatgctgaaattaaagatggtgaaagattgccactggcagtaaaggatatgggcagttgtgaaatataccctcagactattcagcacaatcctaatgggcggtttgtggtggtgtgtggtgatggggagtatatcatctacacagcaatggcattgagaaacaagagctttggatctgctcaggagtttgcatgggcccacgattcttcagagtatgcaataagagagagcaacagcattgtaaagatatttaagaactttaaggaaaaaaaatcatttaaaccagattttggagcagaaagtatctacggcggcttcttattgggagtcagatctgtaaatggcttagccttctatgactgggacaatacagaactcatacgaagaattgaaattcagcccaaacatattttctggtctgactctggagagctagtctgtattgctactgaggaatcattttttatccttaagtatctgtcagaaaaagtcttggctgcacaggaaacacatgagggagttactgaagatggcattgaagatgcctttgaggttcttggtgagattcaggaaattgtgaaaacagggctttgggtaggcgattgcttcatttacacaagttctgtgaacagattaaattattatgttggaggagaaatagtcaccattgcccacttggacaggacgatgtatctcctaggctacattcctaaagacaacaggctttatctgggggataaagaattgaacatcattagctattccctgctggtttcagtcctggaataccagacagctgtcatgcggagggactttagcatggctgataaggtccttcctaccattccaaaagaacagaggaccagagttgcacactttttggaaaagcagggcttcaagcagcaagctcttacagtatccacagatcctgagcatcgttttgagcttgctcttcagcttggagagttaaaaattgcataccagttagcagtggaagcagagtcagaacagaagtggaaacaacttgctgaacttgccattagtaaatgtcagtttggcctagcccaggagtgcctgcatcatgcacaggattatgggggcctgctgcttttggccactgcctctggaaatgctaatatggtgaacaagctagcagagggtgcggagagagatggcaaaaataatgtggcattcatgagctactttttacagggcaaggttgatgcctgcctagagctcttaattagaactggacggctgccagaagctgccttcttggcccgaacttacttacccagtcaggtttcaagggtagtgaaactctggagagagaatctctcaaaagtcaatcagaaagcagcagaatcccttgctgacccaacagagtatgaaaacctgttccctggattaaaagaagcctttgttgttgaagaatgggtgaaggaaacacatgctgatctgtggccagccaaacaatacccacttgtcacgGTCCCCCTGGGCCTCGAGGTCCCCCAGGACCCCCAGGAACACCTGGATCCCAGGGCCTGGCTGGAGAGCGAGGCACAGTGGGGCCGTCCGGTGAACCTGGCGTGAAGGGGGAAGAAGGAGAGAAAGCCGCCACTGCAGAGGGCGAGGGGGTGCAGCAGCTGAGAGAGGCCCTGAAGATCCTGGCAGAGCGAGTCCTCATCCTGGAGCACATGATTGGGATCCACGATCCCCTGGCCTCCCCAGAGGGAGGTTCTGGCCAGGATGCTGCCCTGAGAGCCAACCTCAAGATGAAGAGGGGTGGCGCCCAACCCGATGGGGTCCTTGCTGCCCTGCTTGGGCCCGACCCTGGACAGAAGAGCGTGGACCAGGCCAGCAGCAGGAAGTGA MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKEKKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKYLSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTVPLGLEVPQDPQEHLDPRAWLESEAQWGRPVNLA*RGKKERKPPLQRARGCSS*ERP*RSWQSESSSWST*LGSTIPWPPQREVLARMLP*EPTSR*RGVAPNPMGSLLPCLGPTLDRRAWTRPAAGS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28054 GON4L::DDX19B ENSG00000116580.20::ENSG00000157349.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 30 FALSE NA FALSE NA GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155820606:- chr1:155719450-155829191:- chr1:155790397:- DDX19B ENSG00000157349.17 protein_coding + + chr16:70289663-70335305:+ chr16:70312609:+ chr16:70323566-70369208:+ chr16:70346512:+ chr1:155819568,chr1:155819574,chr1:155819572 chr16:70300550,chr16:70300389,chr16:70300546 NA NA chr1:155789359,chr1:155789365,chr1:155789363 chr16:70334453,chr16:70334292,chr16:70334449 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PAH|572-599|0.096^DUF2789|642-698|0.00024^TelK_muzzle|645-708|6.1e-05^Myb_DNA-bind_6|826-875|0.21^Myb_DNA-binding|826-839|3.2^Myb_DNA-binding_7|856-871|5.4 DEAD|117-280|4.2e-37^PhaP_Bmeg|277-312|0.12^Helicase_C|319-434|5.8e-33^DEAD|335-390|0.37^PhaP_Bmeg|369-465|0.00036 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr16] 46 21 46 21 ONLY_REF_SPLICE YES_LDAS 0.8995 GT 1.4295 AG 1.9656 ENST00000368331.6 1-1014 ENST00000288071.11 58-1440 chr1|-|[2]155820606-155820656[0]|[2]155821474-155821548[0]|[2]155822286-155822476[1]|[0]155826837-155827028[1]|[0]155853276-155853780[0]<==>chr16|+|[0]70312609-70312657[0]|[1]70314902-70314955[0]|[1]70315969-70316104[1]|[2]70317496-70317588[1]|[2]70324585-70324687[2]|[0]70325574-70325688[0]|[1]70329292-70329469[1]|[2]70329831-70330068[2]|[0]70331722-70331884[0]|[1]70332968-70333159[0]|[1]70333521-70333582[2] atgttgccctgtaagaagagaagaactacagtgacagagtccctacagcataaaggcaatcaagaggaaaacaacgtagacctagaatcagccgttaaaccagaatctgaccaggttaaggacttgagttcggtgtcactatcctgggatccaagtcatggcagagtagctggcttcgaagtacagtctttgcaggatgcaggaaatcagcttggtatggaggatacatctctgagctctggaatgctcacccagaacacaaatgtaccaattctagaaggtgttgatgtggccatctctcagggaatcaccctaccttccttggagtcttttcacccccttaatatacacattggtaaaggaaaactccacgctactggctcaaagagagggaaaaaaatgacactcaggcctgggccagttacccaagaagacagatgtgatcatcttaccctaaaggagcctttttcaggagagcctagtgaagaagtcaaggaagaaggagggaaacctcaaatgaattctgaaggggagataccttccctgccatcaggcagccaatctgcaaaaccagtaagccagcccaggaaatcaacccagccagatgtttgtgcctctcctcaagaaaagccactcaggactctgtttcaccaacctgaggaagagatagaagatggtggactcttcattccaatggaagaacaagacaatgaagaaagtgagaaaaggagaaaaaagaaaaagggtaccaagaggaaacgagatggaaggggtcaagaagggaccttggcatatgacctgaaactggatgacatgcttgaccgtaccttggaggatggtgccaagcagcacaatctaacagcagtcaatgtccgaaacatccttcatgaagtaatcacaaatgaacacgtggtagctatgatgaaagcagccatcagtgagacggaagatatgccaatgtttgagcctaaaatgacacgctctaaactgaaggaagtagtggaaaaaggagtgTTGAGCAACTTGCATCTTAAGGAAGAGAAAATCAAACCAGATACCAATGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAGAGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAGCGGGATCCAAACTCCCCTCTGTACTCGGTGAAGTCTTTTGAAGAGCTTCGGCTGAAACCACAGCTTCTCCAAGGAGTCTATGCCATGGGTTTCAATCGTCCATCCAAGATACAAGAGAACGCATTGCCACTGATGCTTGCTGAGCCCCCACAGAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAAAACAGCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTAGAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCCTCCAAACAGGAAAAGTGATTGAACAAATGGGCAAATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAGGCCAGAAGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACTGTGCTGGACTGGTGCTCCAAGCTCAAGTTCATTGATCCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGATCAGAGCATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACTCTGTGTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAACGTTATCAAACTGAAGCGTGAGGAAGAGACCCTGGACACCATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTACGGGGCCATCACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCTCAAAAGAAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAACAGAGGGCTGCAGTGATTGAGCGCTTCCGAGAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGCGGCATTGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACAATGAGACCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGACAGCAAGCACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACACAGATGATTTGGACGAGATTGAGAAAATAGCCAACTGA MLPCKKRRTTVTESLQHKGNQEENNVDLESAVKPESDQVKDLSSVSLSWDPSHGRVAGFEVQSLQDAGNQLGMEDTSLSSGMLTQNTNVPILEGVDVAISQGITLPSLESFHPLNIHIGKGKLHATGSKRGKKMTLRPGPVTQEDRCDHLTLKEPFSGEPSEEVKEEGGKPQMNSEGEIPSLPSGSQSAKPVSQPRKSTQPDVCASPQEKPLRTLFHQPEEEIEDGGLFIPMEEQDNEESEKRRKKKKGTKRKRDGRGQEGTLAYDLKLDDMLDRTLEDGAKQHNLTAVNVRNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGVLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28056 PLEKHG1::MTHFD1L ENSG00000120278.17::ENSG00000120254.16 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 32 FALSE NA FALSE NA PLEKHG1 ENSG00000120278.17 protein_coding + + chr6:150599883-150843665:+ chr6:150650786:+ chr6:150921019-151164801:+ chr6:150971922:+ MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150918577:+ chr6:151186815-151423023:+ chr6:151239713:+ chr6:150652072,chr6:150652064 chr6:150909093,chr6:150909079 NA NA chr6:150973208,chr6:150973200 chr6:151230229,chr6:151230215 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];NEIGHBORS[21884] 38 7 38 7 ONLY_REF_SPLICE YES_LDAS 0.6042 GT 1.6895 AG 1.3383 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA TRUE hsa-mir-12131 chr6:151102675-151102776:+ FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28057 NUFIP2::ENSG00000264808 ENSG00000108256.9::ENSG00000264808.2 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NUFIP2 ENSG00000108256.9 protein_coding - - chr17:29255839-29294148:- chr17:29293783:- chr17:27582857-27621166:- chr17:27620801:- ENSG00000264808 ENSG00000264808.2 lncRNA - - chr17:29333910-29390777:- chr17:29370305:- chr17:27660928-27717795:- chr17:27697323:- chr17:29288531,chr17:29288544 chr17:29384465,chr17:29384465 NA NA chr17:27615549,chr17:27615562 chr17:27711483,chr17:27711483 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 37 14 37 14 ONLY_REF_SPLICE YES_LDAS 0.6847 GT 1.3383 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28060 NIPBL::WDR70 ENSG00000164190.19::ENSG00000082068.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 31 FALSE NA FALSE NA NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:37010225:+ chr5:36876871-37066515:+ chr5:37010327:+ WDR70 ENSG00000082068.9 protein_coding + + chr5:37379285-37753435:+ chr5:37697655:+ chr5:37379387-37753537:+ chr5:37697757:+ chr5:37014147,chr5:37014147 chr5:37657814,chr5:37657811 NA NA chr5:37014249,chr5:37014249 chr5:37657916,chr5:37657913 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DNA_repr_REX1B|60-86|2.9^Nipped-B_C|332-374|0.64^DNA_repr_REX1B|1163-1179|3^Cnd1|1329-1384|3.3^Cnd3|1494-1548|0.62^Cnd3|1591-1662|2.3^HEAT_EZ|1643-1670|1.6^Nipped-B_C|1712-1762|0.013^Cnd1|1754-1875|5.3e-05^HEAT_EZ|1771-1798|0.15^Nipped-B_C|1772-1800|0.4^Cnd3|1775-1804|0.86^HEAT|1778-1800|0.45^HEAT_2|1778-1798|9^SCD|1787-1838|0.016^Cohesin_HEAT|1794-1835|2e-14^HEAT|1820-1839|0.00014^HEAT_2|1822-1875|0.0025^SCD|1822-1879|0.12^Cnd3|1824-1876|9.1e-06^HEAT_EZ|1826-1872|0.00027^Cnd1|1827-1972|0.0025^Cohesin_HEAT|1851-1870|0.016^HEAT|1863-1876|9^DNA_repr_REX1B|1940-1995|0.00015^HEAT|1951-1981|0.93^HEAT_EZ|2047-2063|5.2^SCD|2087-2115|6.8^Cnd3|2171-2245|0.025^HEAT_2|2172-2198|0.0094^HEAT_EZ|2173-2197|1.3^HEAT|2175-2197|3.4^Cnd1|2183-2228|0.44^SCD|2184-2246|0.0014^Nipped-B_C|2275-2455|7e-61^Cnd1|2276-2350|0.017^HEAT|2284-2305|0.91^HEAT_2|2289-2346|0.0091^HEAT_EZ|2296-2338|0.0017^HEAT|2320-2345|0.11^SCD|2785-2800|4.8 none ["NIPBL:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.31Mb] 34 14 34 14 ONLY_REF_SPLICE YES_LDAS 0.6445 GT 1.3753 AG 1.8892 ENST00000282516.13 1-4560 ENST00000265107.9 1093-1965 chr5|+|[0]36953697-36953760[0]|[1]36955472-36955637[1]|[2]36958104-36958231[0]|[1]36961484-36961583[1]|[2]36962123-36962274[0]|[1]36970876-36971036[2]|[0]36971945-36972041[0]|[1]36975776-36976402[0]|[1]36984676-36986301[0]|[1]36995622-36995804[0]|[1]37000373-37000570[0]|[1]37000817-37000888[0]|[1]37000989-37001078[0]|[1]37002662-37002765[2]|[0]37003261-37003347[2]|[0]37006357-37006588[0]|[1]37007323-37007474[2]|[0]37008008-37008088[2]|[0]37008623-37008723[1]|[2]37010087-37010225[2]<==>chr5|+|[0]37697655-37697754[0]|[1]37701058-37701142[1]|[2]37702949-37703087[2]|[0]37721115-37721215[1]|[2]37722855-37722934[0]|[1]37724934-37725050[0]|[1]37726883-37727045[1]|[2]37752486-37752573[2] atgaatggggatatgccccatgtccccattactactcttgcggggattgctagtctcacagacctcctgaaccagctgcctcttccatctcctttacctgctacaactacaaagagccttctctttaatgcacgaatagcagaagaggtgaactgccttttggcttgtagggatgacaatttggtttcacagcttgtccatagcctcaaccaggtatcaacagatcacatagagttgaaagataaccttggcagtgatgacccagaaggtgacataccagtcttgttgcaggccgtcctggcaaggagtcctaatgttttcagggagaaaagcatgcagaacagatatgtacaaagtggaatgatgatgtctcagtataaactttctcagaattccatgcacagtagtcctgcatcttccaattatcaacaaaccactatctcacatagcccctccagccggtttgtgccaccacagacaagctctgggaacagatttatgccacagcaaaatagcccagtgcctagtccatacgccccacaaagccctgcaggatacatgccatattcccatccttcaagttacacaacacatccacagatgcaacaagcatcggtatcaagtcccattgttgcaggtggtttgagaaacatacatgataataaagtttctggtccgttgtctggcaattcagctaatcatcatgctgataatcctagacatggttcaagtgaggactacctacacatggtgcacaggctaagtagtgacgatggagattcttcaacaatgaggaatgctgcatcttttcccttgagatctccacagccagtatgctcccctgctggaagtgaaggaactcctaaaggctcaagaccacctttaatcctacaatctcagtctctaccttgttcatcacctcgagatgttccaccagatatcttgctagattctccagaaagaaaacaaaagaagcagaagaaaatgaaattaggcaaggatgaaaaagagcagagtgagaaagcggcaatgtatgatataattagttctccatccaaggactctactaaacttacattaagactttctcgtgtaaggtcttcagacatggaccagcaagaggatatgatttctggtgtggaaaatagcaatgtttcagaaaatgatattccttttaatgtgcagtacccaggacagacttcaaaaacacccattactccacaagatataaaccgcccactaaatgctgctcaatgtttgtcgcagcaagaacaaacagcattccttccagcaaatcaagtgcctgttttacaacagaacacttcagttgctgcaaaacaaccccagacttctgtggtacagaatcaacaacagatatcacaacagggacctatatatgatgaagtggaattggatgcattggctgaaattgagcgaatagagagagaatcagctattgaaagggagcgcttctcaaaagaagttcaagataaagataagcctttgaaaaaaagaaaacaagattcttacccacaggaggctgggggtgctacaggaggtaatagaccagcttctcaggagacgggttctacgggaaatgggtcaaggccagcattaatggttagcattgatcttcatcaggcaggaagagtggactctcaggcttctataactcaggattcagactccataaaaaagcctgaagaaatcaaacaatgtaatgatgcacctgtttctgttcttcaggaagatattgttggaagtcttaaatctacaccagaaaaccatcctgagacacctaaaaaaaagtctgatcctgagctttcaaagagtgaaatgaaacaaagtgaaagtagattagcagaatctaaaccaaatgaaaaccgattggtggagacaaaatcaagtgaaaataagttagaaactaaagttgagacccaaacagaagaacttaaacagaatgagagcagaacaactgaatgcaaacaaaacgagagcaccatagttgagcctaaacaaaatgaaaatagactgtctgacacaaaaccaaatgacaacaaacaaaataatggcagatcagaaacaacaaaatcaaggcctgaaaccccaaagcaaaagggtgaaagccggcctgagactccaaaacaaaagagtgatgggcatcctgaaaccccaaaacagaagggtgatggaaggcctgaaactccaaagcaaaaaggtgagagccgccctgaaactccaaagcaaaaaaatgaagggcgacctgaaacaccaaaacacaggcatgacaataggagggattctggaaagccatctacagagaaaaaacctgaagtgtctaaacataaacaagatactaaatctgactcacctcggttaaaatcagaacgagctgaagccttaaagcagagacctgatgggcgatctgtttctgagtcactaagacgtgaccatgataataaacaaaaatcagatgacaggggtgaatcagagcgacatcgaggggatcagtctagggttcgaagaccagaaacattgagatcctctagtagaaatgaacatggcattaaatctgatagttcaaaaactgataaactagaacgaaaacacaggcatgaatcaggggactcaagggaaagaccatcttctggggaacaaaaatcaagacctgacagtcctcgtgttaaacaaggagattctaataaatcaagatctgataaacttggttttaaatcaccaactagtaaagatgacaaaaggacagagggtaacaagagtaaagtagacactaataaagcacaccctgacaataaggcagaatttccaagttatttgttggggggcaggtctggtgcgttgaaaaattttgtcattccgaaaatcaagagggataaagatggcaatgttactcaggagacaaagaaaatggaaatgaaaggagagccgaaagacaaagtagaaaaaataggattagttgaagatctaaataaaggagctaagcctgtagttgtgctacaaaaactgtctttggatgatgttcagaaacttattaaagatagagaggacaaatcaagaagttcccttaaacctatcaagaataaaccatcaaagtcaaataaaggtagtatagatcaatcagtgttaaaagaattaccccctgaactcctggcagaaattgagtccaccatgccactttgtgaacgtgtgaaaatgaacaaacgcaagcgtagcacagttaatgaaaagccaaaatatgctgaaatcagttcagatgaagataatgatagtgatgaagcttttgaatcctctaggaaacgacataaaaaagatgatgataaagcttgggaatatgaagagcgtgacagaagaagctctggggatcataggagaagtggccactctcatgaaggaagaaggagttcaggtggtggtcgttatcgaaaccgaagtccgtcagattctgacatggaagattattctcctcctcccagccttagtgaggttgctaggaaaatgaagaaaaaagaaaaacagaagaaaaggaaagcatatgaaccaaaactaacacctgaagaaatgatggactcttcaacttttaagagattcacagcctcaatagagaatattttggataatttggaagatatggattttactgcgtttggtgatgatgatgaaattcctcaggaactgctcttaggaaaacatcagcttaatgaacttggcagtgaatctgctaaaataaaagcaatgggtataatggataagctttcaactgacaaaactgtgaaagtcttaaatatcttggagaagaatattcaggatgggtcaaagctttccactttgttaaatcataataacgatactgaagaagaagaaaggttatggagagaccttattatggagagagttacaaaatcagcggatgcttgtcttacaactatcaacattatgacatcccctaacatgccaaaagctgtgtacattgaggatgtaattgaaagagttatacagtacactaaatttcatttgcagaatacactttatcctcagtatgatcctgtttacagattagatcctcatggaggaggcttattaagttcaaaagcaaaacgggctaaatgttctacccataagcagagagtaatagtaatgctttataacaaagtttgtgacattgttagcagcttatcagaattgctagagatacaacttcttacagacacaacaattcttcaggtttcatctatgggaataacaccattttttgtggaaaatgtcagtgaactacagttgtgtgccattaagttagtcactgcagtattctcaagatatgaaaaacataggcagttaattttggaagaaatttttacttcacttgcaagattaccaaccagcaagaggagtttaaggaacttcaggttaaacagtagtgatatggatggagaacctatgtatattcagatggttacagcactggttttacaacttattcagtgtgtggtacacttaccatcatcagagaaggactctaatgcagaagaagattcaaataaaaaaGTTCATCCTAAGTTCCACTATAAACAGGCTCATGACTCGGGCACAGACACTTCTTGCGTGACTTTTTCCTATGATGGTAATGTCCTTGCCTCTCGTGGAGGTGACGATTCATTAAAATTATGGGACATCCGACAATTTAATAAACCACTTTTTTCAGCCTCGGGTCTTCCCACCATGTTCCCAATGACTGACTGCTGTTTCAGTCCAGATGATAAGCTCATAGTCACTGGTACATCTATTCAAAGAGGATGTGGCAGCGGCAAACTTGTTTTCTTTGAGCGTAGGACTTTCCAAAGGGTGTATGAAATAGACATCACAGATGCGAGTGTTGTTCGCTGCCTGTGGCATCCAAAGCTGAACCAGATCATGGTTGGAACTGGAAATGGATTGGCTAAAGTCTATTACGACCCCAACAAGAGTCAGAGGGGAGCAAAATTATGTGTGGTTAAAACCCAGCGGAAGGCAAAACAAGCTGAGACTCTAACTCAGGACTACATCATCACCCCTCATGCCTTGCCTATGTTCCGTGAGCCCCGCCAACGGAGTACAAGGAAACAGCTGGAGAAGGACAGACTGGATCCCCTGAAGTCGCATAAACCTGAACCTCCTGTAGCAGGCCCAGGTCGTGGTGGCCGAGTTGGAACCCACGGGGGCACTCTCTCTTCCTATATTGTGAAGAACATTGCTTTGGACAAGACCGATGACAGTAATCCTCGGGAAGCCATTTTGCGTCATGCCAAAGCAGCAGAAGACAGCCCATATTGGGTTTCTCCAGCATATTCCAAGACTCAGCCCAAAACCATGTTTGCCCAAGTTGAATCTGATGATGAGGAAGCAAAGAATGAGCCAGAATGGAAAAAACGTAAAATTTGA MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLFNARIAEEVNCLLACRDDNLVSQLVHSLNQVSTDHIELKDNLGSDDPEGDIPVLLQAVLARSPNVFREKSMQNRYVQSGMMMSQYKLSQNSMHSSPASSNYQQTTISHSPSSRFVPPQTSSGNRFMPQQNSPVPSPYAPQSPAGYMPYSHPSSYTTHPQMQQASVSSPIVAGGLRNIHDNKVSGPLSGNSANHHADNPRHGSSEDYLHMVHRLSSDDGDSSTMRNAASFPLRSPQPVCSPAGSEGTPKGSRPPLILQSQSLPCSSPRDVPPDILLDSPERKQKKQKKMKLGKDEKEQSEKAAMYDIISSPSKDSTKLTLRLSRVRSSDMDQQEDMISGVENSNVSENDIPFNVQYPGQTSKTPITPQDINRPLNAAQCLSQQEQTAFLPANQVPVLQQNTSVAAKQPQTSVVQNQQQISQQGPIYDEVELDALAEIERIERESAIERERFSKEVQDKDKPLKKRKQDSYPQEAGGATGGNRPASQETGSTGNGSRPALMVSIDLHQAGRVDSQASITQDSDSIKKPEEIKQCNDAPVSVLQEDIVGSLKSTPENHPETPKKKSDPELSKSEMKQSESRLAESKPNENRLVETKSSENKLETKVETQTEELKQNESRTTECKQNESTIVEPKQNENRLSDTKPNDNKQNNGRSETTKSRPETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETPKHRHDNRRDSGKPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESERHRGDQSRVRRPETLRSSSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSSGEQKSRPDSPRVKQGDSNKSRSDKLGFKSPTSKDDKRTEGNKSKVDTNKAHPDNKAEFPSYLLGGRSGALKNFVIPKIKRDKDGNVTQETKKMEMKGEPKDKVEKIGLVEDLNKGAKPVVVLQKLSLDDVQKLIKDREDKSRSSLKPIKNKPSKSNKGSIDQSVLKELPPELLAEIESTMPLCERVKMNKRKRSTVNEKPKYAEISSDEDNDSDEAFESSRKRHKKDDDKAWEYEERDRRSSGDHRRSGHSHEGRRSSGGGRYRNRSPSDSDMEDYSPPPSLSEVARKMKKKEKQKKRKAYEPKLTPEEMMDSSTFKRFTASIENILDNLEDMDFTAFGDDDEIPQELLLGKHQLNELGSESAKIKAMGIMDKLSTDKTVKVLNILEKNIQDGSKLSTLLNHNNDTEEEERLWRDLIMERVTKSADACLTTINIMTSPNMPKAVYIEDVIERVIQYTKFHLQNTLYPQYDPVYRLDPHGGGLLSSKAKRAKCSTHKQRVIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVSSMGITPFFVENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDMDGEPMYIQMVTALVLQLIQCVVHLPSSEKDSNAEEDSNKKVHPKFHYKQAHDSGTDTSCVTFSYDGNVLASRGGDDSLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSIQRGCGSGKLVFFERRTFQRVYEIDITDASVVRCLWHPKLNQIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPMFREPRQRSTRKQLEKDRLDPLKSHKPEPPVAGPGRGGRVGTHGGTLSSYIVKNIALDKTDDSNPREAILRHAKAAEDSPYWVSPAYSKTQPKTMFAQVESDDEEAKNEPEWKKRKI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28061 AK6::ENSG00000249295 ENSG00000085231.14::ENSG00000249295.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA AK6 ENSG00000085231.14 protein_coding - - chr5:69350984-69370013:- chr5:69355649:- chr5:68646811-68665840:- chr5:68651476:- ENSG00000249295 ENSG00000249295.1 lncRNA - - chr5:69477472-69502466:- chr5:69477675:- chr5:68773299-68798293:- chr5:68773502:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 32 10 32 10 ONLY_REF_SPLICE YES_LDAS 0.5639 GT 1.7232 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28063 NUMB::HEATR4 ENSG00000133961.21::ENSG00000187105.9 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 40 FALSE NA FALSE NA NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73409937:- chr14:73741815-73925323:- chr14:73876645:- HEATR4 ENSG00000187105.9 protein_coding - - chr14:73478484-73558947:- chr14:73493124:- chr14:73945189-74025651:- chr14:73959828:- chr14:73409309,chr14:73409313 chr14:73494627,chr14:73494628 NA NA chr14:73876017,chr14:73876021 chr14:73961331,chr14:73961332 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_REARRANGEMENT:-:[14842] 27 10 27 10 ONLY_REF_SPLICE YES_LDAS 0.4968 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary inexact TRUE Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma UTERUS,STOMACH inexact 73876645,73876645|73876645|73876645 TRUE,TRUE|TRUE|TRUE 73945547,73996948|73987743|73989928 FALSE,FALSE|FALSE|FALSE YES,PARTIALLY 5UTR-CDS,5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28069 ARHGEF11::ENSG00000286073 ENSG00000132694.19::ENSG00000286073.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF11 ENSG00000132694.19 protein_coding - - chr1:156934840-157045742:- chr1:156971697:- chr1:156904632-157015534:- chr1:156941489:- ENSG00000286073 ENSG00000286073.1 unprocessed_pseudogene - - chr1:157287267-157310655:- chr1:157291982:- chr1:157257057-157280445:- chr1:157261772:- chr1:156970810 chr1:157293045 NA NA chr1:156940602 chr1:157262835 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 15 5 15 5 ONLY_REF_SPLICE YES_LDAS 0.2685 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28070 REV3L::GTF3C6 ENSG00000009413.17::ENSG00000155115.7 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 42 TRUE 4719 TRUE 1789 REV3L ENSG00000009413.17 protein_coding - - chr6:111299028-111483715:- chr6:111372596:- chr6:111620231-111804918:- chr6:111693799:- GTF3C6 ENSG00000155115.7 protein_coding + + chr6:110958706-110967890:+ chr6:110962392:+ chr6:111279909-111289093:+ chr6:111283595:+ chr6:111367156,chr6:111367166 chr6:110962142,chr6:110962132 NA NA chr6:111688359,chr6:111688369 chr6:111283345,chr6:111283335 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DNA_pol_B_exo1|95-191|1.2e-11^DUF4683|480-656|4^DUF4683|747-1133|2.5e-179^DUF4683|1186-1224|4^DUF4683|1527-1592|0.04^DUF4683|1692-1780|0.5^DNA_pol_B_exo1|2273-2484|3.8e-19^DNA_pol_B|2550-3000|1.3e-106^zf-C4pol|3042-3109|5.1e-16 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.33Mb] 13 6 13 3.39 ONLY_REF_SPLICE YES_LDAS 0.22 GT 1.5058 AG 1.8892 ENST00000358835.7 1-5759 ENST00000329970.8 248-642 chr6|-|[1]111372596-111376757[1]|[0]111377701-111377843[2]|[1]111379982-111380219[1]|[0]111381325-111381444[1]|[0]111387765-111387913[2]|[1]111388001-111388085[1]|[0]111389106-111389210[1]|[0]111390086-111390180[2]|[1]111392876-111392972[1]|[0]111405470-111405630[2]|[1]111411480-111411554[2]|[1]111416283-111416472[1]|[0]111482750-111482888[0]<==>chr6|+|[1]110962392-110962505[0]|[1]110967510-110967790[2] atgttttcagtaaggatagtgactgcagactactacatggccagcccgctgcaggggctggatacctgccaatcccccctcacccaggcccctgtcaagaaggtgccggtggtgcgagtcttcggagcgaccccggcaggtcagaagacatgtcttcatctacatggcatctttccttacctctatgtgccatacgatggttatggacagcagccagaaagctatctttctcagatggcattcagtatcgacagagcacttaatgtggctttaggcaatccatcttccactgctcagcatgtgttcaaagtgtcattagtatcaggaatgcctttttatggttatcatgagaaggaaagacactttatgaagatctatctttacaatcctacaatggtgaaaaggatatgtgaacttttgcaaagcggagccataatgaataaattttaccagcctcatgaagcgcatattccctacctcctacagctcttcattgactacaatctttatggcatgaatttaataaatctggctgctgtcaagttccgaaaagcaagaaggaaaagtaatacattgcatgcaactggatcctgcaagaatcatttatcaggaaattctcttgctgatactttatttcggtgggaacaagatgaaataccaagctctttaatattggaaggtgttgaaccacagagtacatgtgaattagaagtggatgctgtagctgctgatatcttaaatcgtctggacattgaagctcaaattggtggaaaccctggtctacaggccatatgggaagatgaaaagcaacggcgaagaaacagaaatgaaacttctcaaatgagccaacctgagtcacaagatcacaggtttgtgccagcaacagaaagtgaaaaaaaatttcagaagagacttcaggaaattctcaaacagaatgatttctctgtaacattatcaggatctgtggactacagcgatggatcccaggagttctctgctgagttaacattgcactctgaggttctgtctcctgaaatgcttcagtgtacaccagccaatatggtagaagttcacaaagacaaagagtcaagcaaaggtcacactagacacaaagtggaagaagctcttattaatgaagaagcaattttgaaccttatggaaaatagtcagacttttcagcctttgacccaaagactgagtgagtcacctgttttcatggacagtagtcctgatgaggctctggtacatcttcttgctggtttggaaagtgatggatatcggggggaaagaaataggatgccatcaccatgtcgctcctttggaaataataaatatccacaaaatagtgatgatgaagaaaatgaaccacagattgaaaaagaggaaatggagcttagtttggtgatgtcccagagatgggacagcaatattgaagaacattgtgccaaaaagagatcactgtgcagaaatacccacagaagttcaactgaagatgatgactcatcttcaggagaagaaatggaatggagtgataacagtttgcttctagccagtctttctatacctcagttagatggaactgcagatgaaaatagtgacaatccattgaacaatgaaaattctagaacccactcttctgtaattgcaacaagcaagctttcagttaaaccctccatctttcacaaagatgctgctacattagaaccctcatcttctgctaagattacctttcagtgtaaacacacaagtgccctttcttcccatgttttgaacaaggaagatttaattgaagacctttcacagacaaacaaaaatacagaaaaaggtctagataactcagtcacttcttttacaaacgaaagcacttattctatgaaataccctggatctttaagcagtactgttcattcagaaaattctcataaagagaatagtaagaaagagatcctcccagtatcttcctgtgaaagtagtatttttgattatgaagaagatattccatctgttacaagacaagtaccaagtagaaaatatacaaacattagaaaaatcgaaaaggattccccttttatacatatgcaccgtcaccctaacgagaatacattgggcaaaaattctttcaacttttctgacttaaatcattcaaaaaataaagtatcctctgaaggaaatgaaaaaggaaacagcacagctctgagtagtttattcccttcatcatttactgaaaattgtgaattactgtcatgctcaggggagaatagaactatggtgcattctcttaatagcactgctgatgaaagtggactaaataaacttaaaattaggtatgaagaatttcaagaacataaaacagaaaagccaagcctcagccagcaagcagcacactatatgttttttcccagtgttgttctttctaactgtcttactagaccacagaaactatctcctgtcacatataaattacaacctggcaataaaccatcccggttaaaattgaataaaaggaaacttgcaggtcatcaggagacttctaccaaaagtagtgagactggatccacaaaagataattttatacaaaataatccttgtaatagtaatcctgagaaggataatgcattggctagtgatttaactaaaaccactcgtggagcttttgaaaataaaacacccacagatggttttatagactgtcactttggagatggaacgttagaaactgagcagtcctttggactatatggaaataaatacacacttagagccaaacgcaaggtaaattatgagactgaagacagtgagtcaagttttgtaactcacaactcaaaaattagtctacctcatcccatggaaattggtgaaagtttagatggaactctcaaatcccgaaaacgaagaaaaatgtctaaaaagctgccccctgtcatcataaagtatattattattaatagatttagagggagaaaaaatatgcttgtgaagctaggaaaaatagactctaaagaaaaacaagtaatattaacagaagaaaaaatggaactatataaaaagcttgcacctttgaaggacttttggccaaaagttcccgactcccctgcaaccaaatatcccatttatccactaacaccaaagaaaagtcacagaagaaagtcaaaacataaatctgctaagaaaaaaactggtaaacaacaaaggacaaataatgaaaatattaaaagaactttgtctttcaggaaaaaacggtcacatgctattctttctcctccctcaccatcttacaatgctgaaaccgaagattgtgacctgaattatagtgatgttatgtctaaactaggttttctttctgagagaagcacaagtcccataaattcttctccacctcgctgctggtctcccacagatccaagagctgaagaaatcatggctgctgcagaaaaagaggcaatgctttttaagggtcctaatgtatataagaagactgttaattctcgtataggaaaaactagtcgcgcaagagcacagattaagaaatcaaaagcaaagcttgctaatccctctatagttactaagaaaaggaacaaacgaaatcagacaaataaactagtagatgatggaaaaaagaaaccaagagcaaaacaaaaaacaaatgagaaaggtacatcgagaaagcatacaacacttaaggatgaaaaaataaaatctcagtctggtgctgaggttaagtttgtactgaaacaccagaatgtgtctgaatttgcaagtagttctggaggctctcaactactttttaaacagaaagatatgccactaatgggctctgctgtagatcatcccctttctgcttccctacccactggaattaatgcacaacagaagttatctggctgcttttcttctttcttagaaagcaagaagtctgtagatttgcagacattccccagttcacgagatgatttgcatccatcagttgtttgtaattctataggacctggagtctcaaaaattaatgttcaaaggcctcataatcaaagtgctatgtttactctaaaggaatcaacgttaattcaaaaaaatatatttgacctttccaatcatttatctcaggtagcacagaatacacagatatcttctggtatgtcctcaaagatagaagataatgcaaataatatacaaagaaactatttgtcatcaatcggaaagttaagtgaatatcgcaattccctagaatcaaagctggaccaagcatatacccctaattttttgcattgcaaagacagtcagcagcagattgtgtgcatagcggaacagtcaaagcacagtgaaacttgttctccgggaaatacagcttcagaggaaagccaaatgcctaataattgctttgtaacttccttgagaagtccaatcaaacaaatagcatgggagcaaaagcaaaggggctttattttagatatgtcaaattttaaacctgaaagagtaaaaccgaggtcgttatcagaagcaatttcacaaaccaaagcactttctcagtgtaaaaatcgaaatgtgtcaacaccttcagcatttggtgaaggacagtctggactggcagttctaaaagaattgttacaaaaaagacagcagaaagcacaaaatgcaaatactacacaagacccattatccaataaacatcaaccaaataaaaatatttctggttcccttgagcataacaaagcaaataaacggacacgatcggtaacgtccccaagaaaacctcgaactcccagaagtacaaaacaaaaagaaaaaatccccaaacttctcaaagtagactctttaaatttacaaaactctagccagttggataactctgtatcagatgatagtcccatctttttttcagatccaggctttgaaagttgttactcacttgaagatagtttatctcctgaacataattataattttgatattaacacaataggtcagactggattttgtagcttttattctggaagtcagtttgtcccagctgatcagaatttgcctcagaagttcctaagtgatgctgttcaggatctttttccaggacaagctatagaaaaaaatgagtttttaagtcatgacaaccagaaatgtgatgaagacaagcatcataccacagactcagcctcatggattagatctggtactttaagtcctgaaatttttgagaagtcaaccatagatagcaatgagaatcgtcgccacaaccagtggaaaaatagctttcatcctctaacaactcggtctaactcaataatggattctttctgtgttcagcaggcagaagactgtctaagtgaaaaatctagattgaataggagttcagtaagcaaagaagtgtttcttagcctcccacagccaaacaattcagactggattcaaggtcacaccagaaaagaaatgggacagtctcttgactcagccaatacctcttttactgcaatactctcctcccctgatggtgaacttgtagacgtggcctgtgaagatttagaactgtatgtttcaagaaacaatgatatgttgacaccaactcctgatagttcaccaagatctactagctctccttcacaatctaaaaatggcagcttcacccctcgaactgctaacattctgaaaccacttatgtcccccccaagtagggaagaaattatggcaactttgttggatcatgacctgtctgagactatttaccaggaaccattttgcagtaatccttctgatgtaccagaaaagcccagCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAGAACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTATCGACCCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAATCTTTGGAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGAAATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGGAAACTCAAATGCTGCCTTAG MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARRKSNTLHATGSCKNHLSGNSLADTLFRWEQDEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQRRRNRNETSQMSQPESQDHRFVPATESEKKFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFSAELTLHSEVLSPEMLQCTPANMVEVHKDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLLAGLESDGYRGERNRMPSPCRSFGNNKYPQNSDDEENEPQIEKEEMELSLVMSQRWDSNIEEHCAKKRSLCRNTHRSSTEDDDSSSGEEMEWSDNSLLLASLSIPQLDGTADENSDNPLNNENSRTHSSVIATSKLSVKPSIFHKDAATLEPSSSAKITFQCKHTSALSSHVLNKEDLIEDLSQTNKNTEKGLDNSVTSFTNESTYSMKYPGSLSSTVHSENSHKENSKKEILPVSSCESSIFDYEEDIPSVTRQVPSRKYTNIRKIEKDSPFIHMHRHPNENTLGKNSFNFSDLNHSKNKVSSEGNEKGNSTALSSLFPSSFTENCELLSCSGENRTMVHSLNSTADESGLNKLKIRYEEFQEHKTEKPSLSQQAAHYMFFPSVVLSNCLTRPQKLSPVTYKLQPGNKPSRLKLNKRKLAGHQETSTKSSETGSTKDNFIQNNPCNSNPEKDNALASDLTKTTRGAFENKTPTDGFIDCHFGDGTLETEQSFGLYGNKYTLRAKRKVNYETEDSESSFVTHNSKISLPHPMEIGESLDGTLKSRKRRKMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWPKVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNNENIKRTLSFRKKRSHAILSPPSPSYNAETEDCDLNYSDVMSKLGFLSERSTSPINSSPPRCWSPTDPRAEEIMAAAEKEAMLFKGPNVYKKTVNSRIGKTSRARAQIKKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQSGAEVKFVLKHQNVSEFASSSGGSQLLFKQKDMPLMGSAVDHPLSASLPTGINAQQKLSGCFSSFLESKKSVDLQTFPSSRDDLHPSVVCNSIGPGVSKINVQRPHNQSAMFTLKESTLIQKNIFDLSNHLSQVAQNTQISSGMSSKIEDNANNIQRNYLSSIGKLSEYRNSLESKLDQAYTPNFLHCKDSQQQIVCIAEQSKHSETCSPGNTASEESQMPNNCFVTSLRSPIKQIAWEQKQRGFILDMSNFKPERVKPRSLSEAISQTKALSQCKNRNVSTPSAFGEGQSGLAVLKELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHNKANKRTRSVTSPRKPRTPRSTKQKEKIPKLLKVDSLNLQNSSQLDNSVSDDSPIFFSDPGFESCYSLEDSLSPEHNYNFDINTIGQTGFCSFYSGSQFVPADQNLPQKFLSDAVQDLFPGQAIEKNEFLSHDNQKCDEDKHHTTDSASWIRSGTLSPEIFEKSTIDSNENRRHNQWKNSFHPLTTRSNSIMDSFCVQQAEDCLSEKSRLNRSSVSKEVFLSLPQPNNSDWIQGHTRKEMGQSLDSANTSFTAILSSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRSTSSPSQSKNGSFTPRTANILKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPS*YRRQ**NSAKI*MPYNEEAQHDKNSPDREEGRRRKHRWGGMAANKG**FLLSTQHDL*LST*K*RRRSGSFSPR*IFGIGRGRDSNERQFKPEL*TGETNALGNRRFWSSY*YTF*DRRFCFYGNSNAAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28073 BLMH::MYO15B ENSG00000108578.15::ENSG00000266714.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 39 FALSE NA FALSE NA BLMH ENSG00000108578.15 protein_coding - - chr17:30248203-30292056:- chr17:30266885:- chr17:28575221-28619074:- chr17:28593903:- MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75605864:+ chr17:73583881-73622929:+ chr17:73601945:+ chr17:30260518,chr17:30260521 chr17:75605065,chr17:75605062 NA NA chr17:28587536,chr17:28587539 chr17:73601146,chr17:73601143 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Peptidase_C1_2|6-451|1.3e-211^Peptidase_C1|62-100|0.00031^Peptidase_C1|389-412|1.9e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:45.30Mb] 12 9 12 6.63 ONLY_REF_SPLICE YES_LDAS 0.2501 GT 1.7819 AG 1.8892 ENST00000261714.11 1-1216 ENST00000645453.3 4135-9291 chr17|-|[0]30266885-30266954[0]|[2]30271271-30271388[2]|[1]30272561-30272628[0]|[2]30272741-30272899[0]|[2]30274042-30274197[0]|[2]30285388-30285480[0]|[2]30286814-30286902[1]|[0]30287806-30287947[0]|[2]30289373-30289482[1]|[0]30291311-30291508[1]|[0]30291807-30291819[0]<==>chr17|+|[0]75605864-75606021[1]|[2]75610166-75610259[2]|[0]75610900-75610959[2]|[0]75611601-75611658[0]|[1]75611886-75612016[2]|[0]75612798-75612893[2]|[0]75612974-75613209[1]|[2]75613293-75613471[0]|[1]75613705-75613777[1]|[2]75614199-75614360[1]|[2]75614583-75614683[0]|[1]75614773-75614849[2]|[0]75614961-75615042[0]|[1]75615240-75615338[0]|[1]75615503-75615600[2]|[0]75615693-75615884[2]|[0]75616069-75616147[0]|[1]75616312-75616446[0]|[1]75616524-75616785[1]|[2]75616874-75616961[2]|[0]75617085-75617304[0]|[1]75617810-75617922[2]|[0]75618126-75618185[2]|[0]75619143-75619218[0]|[1]75619358-75619476[2]|[0]75619681-75619799[1]|[2]75619879-75620020[2]|[0]75620246-75620357[0]|[1]75620467-75620636[2]|[0]75621031-75621176[1]|[2]75621345-75621408[2]|[0]75621501-75621570[0]|[1]75622004-75622080[2]|[0]75623781-75623854[1]|[2]75623949-75624064[0]|[1]75624175-75624269[2]|[0]75624370-75624447[2]|[0]75624543-75624639[0]|[1]75624771-75624916[2]|[0]75625123-75625238[1]|[2]75625527-75625660[0]|[1]75625844-75625977[2]|[0]75626088-75626228[2]|[0]75626407-75626484[2] atgagcagctcgggactgaattcggagaaggtagctgctctgatacagaaactgaattccgacccccagttcgtacttgcccagaatgtcgggaccacccacgacctgctggacatctgtctgaagcgggccacggtgcagcgcgcgcagcatgtgttccagcacgccgtgccccaggagggcaagccaatcaccaaccagaagagctcagggcgatgctggatcttttcttgtctgaatgttatgaggcttccattcatgaaaaagttaaatattgaagaatttgagtttagccaatcttacctgtttttttgggacaaggttgaacgctgttatttcttcttgagtgcttttgtggacacagcccagagaaaggagcctgaggatgggaggctggtgcagtttttgcttatgaaccctgcaaatgatggtggccaatgggatatgcttgttaatattgttgaaaaatatggtgttatccctaagaaatgcttccctgaatcttatacaacagaggcaaccagaaggatgaatgatattctgaatcacaagatgagagaattctgtatacgactgcggaacctggtacacagtggagcaaccaaaggagaaatctcggccacacaggacgtcatgatggaggagatattccgagtggtgtgcatctgtttgggtaatccaccagagacattcacctgggaatatcgagacaaagataaaaattatcagaaaattggccccataacacccttggagttttacagggaacatgtcaagccactcttcaatatggaagataagatttgtttagtgaatgaccctaggccccagcacaagtacaacaaactttacacagtggaatacttaagcaatatggttggagggagaaaaactctatacaacaaccagcccattgacttcctgaaaaagatggttgctgcctccatcaaagatggagaggctgtgtggtttggctgtgatgttggaaaacacttcaatagcaagctgggcctcagtgacatgaatctctatgaccatgagttagtgtttggtgtctccttgaagaacatgaataaagcggagaggctgacttttggtgagtcacttatgacccacgccatgaccttcactgctgtctcagagaaggatgatcaggatggtgctttcacaaaatggagagtggagaattcatggggtgaagaccatggccacaaagGTCCTGCTGCAGGAGCAGGGCTGGCAGCGGCTGGAGGAGCTCCGGGACCAGCAGCGCTCCCAGGCCCTGGTCGACCTGCACCGCAGCTTCCACACCTGCATCTCCCGCCAGCGCGTCCTGCCCCGGATGCAGGCTCGCATGCGTGGGTTCCAGGCCAGGAAGCGGTACCTCCGGCGGCGGGCAGCTTTGGGACAGCTGAACACCATCCTGCTGGTGGCCCAGCCCCTGCTCCAGAGGCGGCAGAGACTGCAGCTTGGGCGTTGGCAGGGCTGGCATAGCAGCGAAAGGGCCTTGGAGAGAGTGCCAAGCATGGAGCTGGGGCGCTTGGAGATCCCGGCTGAGCTGGCCGTCATGCTGAAGACGGCGGAAAGCCATCGGGACGCCCTGGCTGGGAGCATCACCGAGTGCCTGCCGCCTGAGGTTCCTGCCCGGCCCAGCCTGACTCTCCCAGCAGACATTGACCTGTTCCCTTTCTCCAGCTTCGTCGCCATCGGCTTTCAGGAACCGTCCCTGCCCAGGCCAGGGCAGCCACTGGCGAAGCCCCTAACCCAGCTGGATGGAGACAACCCTCAGCGTGCCCTGGACATCAACAAAGTGATGCTGCGGCTCCTGGGGGACGGATCCCTGGAGTCCTGGCAGAGGCAGATCATGGGCGCATACCTGGTGCGGCAGGGGCAGTGCCGGCCAGGGCTGCGGAATGAGCTCTTTAGCCAGCTGGTGGCCCAGCTATGGCAGAACCCAGATGAACAGCAGAGCCAGCGTGGCTGGGCCCTCATGGCTGTTTTGCTCAGCGCCTTTCCCCCACTGCCTGTCCTACAGAAGCCACTGCTCAAGTTCGTGTCTGACCAGGCCCCCAGGGGCATGGCAGCGCTGTGCCAGCACAAGCTGCTGGGGGCCTTGGAGCAGTCGCAGCTGGCCTCGGGGGCCACTCGGGCCCACCCCCCGACCCAGCTGGAGTGGCTGGCCGGATGGCGGCGGGGCCGCATGGCGCTGGATGTGTTCACCTTCAGCGAGGAGTGCTACTCGGCCGAGGTGGAGTCTTGGACCACCGGGGAGCAGCTGGCTGGGTGGATCCTGCAGAGCAGAGGCCTGGAGGCGCCTCCCCGGGGCTGGTCTGTGTCACTGCACTCCAGGGACGCATGGCAGGACTTGGCTGGCTGCGACTTTGTGCTGGACCTGATCAGCCAGACTGAGGACCTGGGGGACCCAGCTCGCCCCCGCAGCTACCCCATCACTCCTCTTGGCTCAGCCGAGGCCATTCCCCTTGCCCCTGGCATTCAGGCCCCCTCACTGCCCCCAGGACCCCCTCCAGGTCCAGCCCCAACGCTGCCCAGCAGGGACCACACAGGGGAGGTCCAGAGGTCAGGGAGCCTGGACGGCTTCCTGGACCAGATCTTCCAGCCAGTGATATCCTCCGGCCTCAGCGATCTGGAACAAAGCTGGGCTCTGAGCAGCCGCATGAAGGGAGGGGGCGCCATTGGGCCCACACAGCAGGGCTACCCCATGGTGTACCCAGGAATGATTCAGATGCCTGCATACCAGCCAGGCATGGTCCCTGCACCCATGCCCATGATGCCAGCAATGGGCACAGTCCCTGCCATGCCAGCCATGGTGGTGCCGCCGCAGCCACCGCTTCCCAGCCTGGATGCAGGGCAGCTGGCCGTCCAGCAGCAGAACTTTATCCAGCAGCAGGCGCTAATCCTGGCCCAGCAGATGACAGCCCAGGCCATGTCCCTGTCCCTGGAGCAGCAGATGCAGCAGCGGCAGCAGCAGGCTCGGGCCTCCGAGGCTGCGTCCCAGGCCTCACCCTCAGCCGTCACCTCCAAGCCCAGGAAGCCCCCCACACCCCCGGAGAAGCCACAGCGTGACCTGGGATCAGAGGGTGGCTGCCTGAGGGAGACCTCCGAGGAGGCTGAAGACAGGCCCTATCAGCCCAAGAGCTTCCAGCAGAAACGGAACTATTTCCAGAGGATGGGGCAGCCACAGATCACAGTGAGGACGATGAAGCCCCCGGCCAAGGTCCACATCCCCCAGGGGGAAGCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGCAAGAAGTGGAAACAAGAGCAGTGCCGTCCCCTCCTCCTCCCCCCATCGTGAAGAAGCCATTGAAGCAAGGTGGGGCCAAAGCTCCAAAAGAGGCTGAGGCTGAGCCAGCCAAGGAGACAGCGGCCAAGGGCCATGGCCAAGGGCCAGCCCAAGGCAGGGGGACTGTGGTGCGCAGCTCAGACTCCAAGCCCAAGCGGCCACAACCCAGCAGGGAAATTGGCAACATCATCCGCATGTACCAGAGCCGCCCGGGCCCCGTGCCTGTGCCCGTGCAGCCATCCAGGCCTCCCAAAGCTTTCCTGAGGAAAATCGACCCCAAGGACGAGGCTCTGGCCAAGCTGGGTATCAACGGTGCCCACTCGTCCCCGCCGATGCTGTCCCCCAGCCCAGGAAAGGGCCCCCCGCCAGCTGTGGCTCCTCGACCCAAGGCCCCGCTACAGCTTGGGCCCTCTAGCTCCATCAAGGAAAAGCAGGGGCCCCTTCTGGACCTGTTTGGCCAGAAGCTGCCTATTGCCCACACACCCCCACCTCCACCAGCGCCACCACTGCCTCTGCCCGAGGACCCAGGGACCCTTTCAGCAGAGCGTCGTTGCTTGACACAGCCCGTGGAGGACCAGGGGGTCTCCACCCAGCTACTCGCGCCCTCTGGCAGCGTGTGCTTCTCCTACACCGGCACGCCCTGGAAGTTGTTCCTACGCAAGGAGGTGTTCTACCCACGGGAGAACTTCAGCCATCCCTACTACCTGAGGCTCCTCTGTGAGCAGATCCTACGGGACACCTTCTCCGAGTCCTGTATCCGGATTTCCCAGAATGAGCGGCGGAAAATGAAAGACCTGCTGGGAGGCTTGGAGGTGGACCTGGATTCTCTCACCACCACCGAAGACAGCGTCAAGAAGCGCATCGTGGTGGCCGCTCGGGACAACTGGGCCAATTACTTCTCCCGCTTCTTTCCTGTCTCGGGCGAGAGTGGCAGCGACGTGCAGCTGTTAGCCGTGTCCCACCGTGGGCTGCGACTGCTCAAGGTGACCCAAGGCCCCGGCCTCCGCCCCGACCAGCTGAAGATTCTCTGCTCATACAGCTTTGCGGAGGTGCTGGGTGTGGAGTGCCGGGGCGGCTCCACCCTGGAGCTGTCACTGAAGAGCGAGCAGCTGGTGCTGCACACAGCCCGGGCAAGGGCCATCGAGGCGCTGGTTGAGCTATTCCTGAATGAGCTTAAGAAGGACTCCGGCTATGTCATCGCCCTGCGCAGCTACATCACTGACAACTGCAGCCTCCTCAGCTTCCACCGTGGGGACCTCATCAAGCTGCTGCCGGTGGCCACCCTGGAGCCAGGCTGGCAGTTTGGCTCTGCCGGGGGCCGTTCCGGACTCTTTCCTGCCGACATAGTGCAGCCGGCTGCCGCTCCCGACTTTTCCTTCTCCAAGGAGCAGAGGAGTGGCTGGCACAAGGGTCAGCTGTCCAACGGGGAACCAGGGCTGGCTCGGTGGGACAGGGCCTCAGAGCGCCCTGCCCACCCTTGGAGCCAGGCACACAGTGACGACTCGGAGGCCACCAGCCTGTCCTCTGTGGCCTATGCCTTTCTGCCCGACTCCCACAGCTACACCATGCAGGAATTCGCCCGGCGTTACTTCCGGAGGTCCCAGGCCTTGCTGGGCCAGACTGATGGAGGTGCCGCAGGAAAGGACACGGACAGCCTGGTGCAGTACACCAAGGCTCCCATCCAGGAGTCGCTCCTCAGCCTCAGTGATGATGTGAGCAAGCTGGCTGTAGCCAGCTTCCTGGCCCTGATGCGGTTTATGGGTGACCAGTCCAAGCCCCGGGGCAAGGATGAGATGGATCTGCTCTATGAACTGCTGAAGCTGTGCCAGCAGGAGAAGCTGAGGGATGAGATTTACTGCCAGGTTATCAAGCAGGTCACGGGACACCCCCGGCCGGAACACTGCACTCGAGGCTGGAGCTTCCTCAGCCTTCTCACAGGCTTCTTCCCCCCGTCGACCAGGCTGATGCCCTACCTGACCAAGTTTCTGCAGGATTCAGGCCCCAGCCAAGAGCTGGCCCGGAGCAGCCAGGAGCACCTCCAGCGCACAGTCAAATATGGGGGGCGCCGGCGGATGCCCCCACCGGGTGAAATGAAGGCTTTCCTGAAAGGACAAGCGATTCGCCTGCTTCTTATTCACCTGCCGGGGGGTGTGGATTATAGGACGAATATCCAGACTTTCACAGTAGCAGCAGAAGTGCAGGAGGAGCTGTGCCGGCAAATGGGTATCACGGAGCCTCAGGAAGTGCAGGAATTCGCCCTCTTCCTCATCAAAGAGAAGAGCCAGCTGGTGCGGCCCCTGCAGCCCGCCGAATACCTCAACAGCGTGGTAGTGGACCAGGACGTGAGCCTGCACAGCCGGCGGCTCCACTGGGAGACCCCACTGCACTTCGATAACTCCACCTACATCAGCACCCACTACAGCCAGGTGCTGTGGGACTACCTTCAGGGGAAGCTGCCAGTCAGCGCCAAGGCAGACGCGCAGCTCGCCAGGCTGGCCGCCCTGCAGCACCTCAGCAAGGCCAACAGGAATACCCCCTCAGGGCAGGACCTGCTAGCTTACGTGCCAAAGCAGCTGCAACGGCAGGTGAACACGGCCTCCATCAAGAACCTGATGGGTCAGGAGCTGAGACGGCTGGAAGGACACAGCCCCCAGGAAGCACAGATCAGCTTCATTGAGGCCATGAGCCAGCTGCCCCTCTTCGGCTACACCGTCTATGGGGTGCTGCGAGTGAGCATGCAGGCCCTGTCCGGACCCACTCTCCTGGGGCTCAACCGCCAGCATCTCATCCTCATGGACCCCAGCTCCCAGAGCCTGTACTGCCGCATTGCCCTGAAGAGCCTGCAGCGGCTCCACCTGCTAAGCCCTCTGGAGGAGAAGGGGCCCCCTGGCCTGGAAGTCAACTATGGCTCAGCTGACAACCCCCAGACCATCTGGTTTGAGCTGCCACAGGCCCAGGAGCTGCTATACACCACTGTCTTCCTGATAGACAGCAGTGCCTCTTGCACTGAGTGGCCCAGCATCAACTGA MSSSGLNSEKVAALIQKLNSDPQFVLAQNVGTTHDLLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRCWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYQKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKYNKLYTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGPAAGAGLAAAGGAPGPAALPGPGRPAPQLPHLHLPPARPAPDAGSHAWVPGQEAVPPAAGSFGTAEHHPAGGPAPAPEAAETAAWALAGLA*QRKGLGESAKHGAGALGDPG*AGRHAEDGGKPSGRPGWEHHRVPAA*GSCPAQPDSPSRH*PVPFLQLRRHRLSGTVPAQARAATGEAPNPAGWRQPSACPGHQQSDAAAPGGRIPGVLAEADHGRIPGAAGAVPARAAE*AL*PAGGPAMAEPR*TAEPAWLGPHGCFAQRLSPTACPTEATAQVRV*PGPQGHGSAVPAQAAGGLGAVAAGLGGHSGPPPDPAGVAGRMAAGPHGAGCVHLQRGVLLGRGGVLDHRGAAGWVDPAEQRPGGASPGLVCVTALQGRMAGLGWLRLCAGPDQPD*GPGGPSSPPQLPHHSSWLSRGHSPCPWHSGPLTAPRTPSRSSPNAAQQGPHRGGPEVREPGRLPGPDLPASDILRPQRSGTKLGSEQPHEGRGRHWAHTAGLPHGVPRNDSDACIPARHGPCTHAHDASNGHSPCHASHGGAAAATASQPGCRAAGRPAAELYPAAGANPGPADDSPGHVPVPGAADAAAAAAGSGLRGCVPGLTLSRHLQAQEAPHTPGEATA*PGIRGWLPEGDLRGG*RQALSAQELPAETELFPEDGAATDHSEDDEAPGQGPHPPGGSAGGGGGGGGGGGAGGARSGNKSSAVPSSSPHREEAIEARWGQSSKRG*G*ASQGDSGQGPWPRASPRQGDCGAQLRLQAQAATTQQGNWQHHPHVPEPPGPRACARAAIQASQSFPEENRPQGRGSGQAGYQRCPLVPADAVPQPRKGPPASCGSSTQGPATAWAL*LHQGKAGAPSGPVWPEAAYCPHTPTSTSATTASARGPRDPFSRASLLDTARGGPGGLHPATRALWQRVLLLHRHALEVVPTQGGVLPTGELQPSLLPEAPL*ADPTGHLLRVLYPDFPE*AAENERPAGRLGGGPGFSHHHRRQRQEAHRGGRSGQLGQLLLPLLSCLGREWQRRAAVSRVPPWAATAQGDPRPRPPPRPAEDSLLIQLCGGAGCGVPGRLHPGAVTEERAAGAAHSPGKGHRGAG*AIPE*A*EGLRLCHRPAQLHH*QLQPPQLPPWGPHQAAAGGHPGARLAVWLCRGPFRTLSCRHSAAGCRSRLFLLQGAEEWLAQGSAVQRGTRAGSVGQGLRAPCPPLEPGTQ*RLGGHQPVLCGLCLSARLPQLHHAGIRPALLPEVPGLAGPD*WRCRRKGHGQPGAVHQGSHPGVAPQPQ**CEQAGCSQLPGPDAVYG*PVQAPGQG*DGSAL*TAEAVPAGEAEG*DLLPGYQAGHGTPPAGTLHSRLELPQPSHRLLPPVDQADALPDQVSAGFRPQPRAGPEQPGAPPAHSQIWGAPADAPTG*NEGFPERTSDSPASYSPAGGCGL*DEYPDFHSSSRSAGGAVPANGYHGASGSAGIRPLPHQREEPAGAAPAARRIPQQRGSGPGREPAQPAAPLGDPTALR*LHLHQHPLQPGAVGLPSGEAASQRQGRRAARQAGRPAAPQQGQQEYPLRAGPASLRAKAAATAGEHGLHQEPDGSGAETAGRTQPPGSTDQLH*GHEPAAPLRLHRLWGAASEHAGPVRTHSPGAQPPASHPHGPQLPEPVLPHCPEEPAAAPPAKPSGGEGAPWPGSQLWLS*QPPDHLV*AATGPGAAIHHCLPDRQQCLLH*VAQHQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28074 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 36 TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770993:- chr11:767220-777488:- chr11:770993:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DJ-1_PfpI|75-132|1.1e-06^DJ-1_PfpI|173-203|0.025 none ["TCGA_StarF2019","CCLE_StarF2019"] 12 19 12 7.33 ONLY_REF_SPLICE YES_LDAS 0.2595 GT 1.7819 AG 1.9086 ENST00000319863.13 1-656 ENST00000436108.6 960-1182 chr11|-|[1]770993-771104[1]|[0]771333-771426[0]|[2]772427-772521[1]|[0]773522-773629[1]|[0]774008-774113[0]|[2]775066-775142[1]|[0]777399-777462[0]<==>chr11|-|[2]869858-869956[0]|[2]870121-870163[2]|[1]870419-870499[2] atggcgtccgagcggctccctaacaggcccgcctgtctgctcgtggccagcggcgccgccgaaggtgtgtcggcccagtccttcctccactgtttcacgatggccagcaccgccttcaacctgcaggtggccacccctggggggaaagccatggaatttgtggatgtgactgagagcaatgcacgctgggtgcaagacttccgcctcaaggcttacgccagccccgccaagctcgagtccatcgatggtgcccggtaccatgccctcctgatccccagctgtcctggggccctgaccgacctggccagcagtggctccctggcccgtatcctgcagcacttccactctgagagcaaacccatctgcgccgtcggccacggtgtcgccgccctgtgctgtgccaccaacgaggacagatcctgggtgttcgacagctacagcctgacagggccctctgtgtgtgagctcgtcagggcccccggcttcgcccgcctgccgctcgtggtggaggacttcgtgaaggattcgggcgcctgcttcagtgcaagcgagcctgacgctgtccacgtcgtgctggaccgccacctggtcacaggccagaatgccagctccactgtcccggccgtgcagaacctgctcttcctctgtggcagccgGTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGCCTCAGAGCACTTCTTCGAGTACAAGAAGAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAGTCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTGGGAGCTGGGCCAGGGCCTGGACTACTTCTACGACCTGCTCTAG MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28076 MPP7::PARD3 ENSG00000150054.19::ENSG00000148498.17 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 44 FALSE NA FALSE NA MPP7 ENSG00000150054.19 protein_coding - - chr10:28050993-28334486:- chr10:28302861:- chr10:28339922-28623415:- chr10:28591790:- PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34131583:- chr10:34398488-35104253:- chr10:34420511:- chr10:28276374,chr10:28276376 chr10:34168391,chr10:34168390 NA NA chr10:28565303,chr10:28565305 chr10:34457319,chr10:34457318 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr10:5.78Mb] 11 5 11 5 ONLY_REF_SPLICE YES_LDAS 0.2148 GT 1.5656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28077 ENSG00000259420::HMG20A ENSG00000259420.5::ENSG00000140382.15 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 47 FALSE NA FALSE NA ENSG00000259420 ENSG00000259420.5 lncRNA + + chr15:77568970-77608888:+ chr15:77569176:+ chr15:77861312-77901230:+ chr15:77861518:+ HMG20A ENSG00000140382.15 protein_coding + + chr15:77420412-77485607:+ chr15:77471783:+ chr15:77712754-77777949:+ chr15:77764125:+ chr15:77572321,chr15:77572322 chr15:77471047,chr15:77471045 NA NA chr15:77864663,chr15:77864664 chr15:77763389,chr15:77763387 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 1 10 1 ONLY_REF_SPLICE YES_LDAS 0.1477 GT 1.8295 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28078 REV3L::GTF3C6 ENSG00000009413.17::ENSG00000155115.7 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4719 TRUE 1789 REV3L ENSG00000009413.17 protein_coding - - chr6:111299028-111483715:- chr6:111367626:- chr6:111620231-111804918:- chr6:111688829:- GTF3C6 ENSG00000155115.7 protein_coding + + chr6:110958706-110967890:+ chr6:110962392:+ chr6:111279909-111289093:+ chr6:111283595:+ chr6:111367156,chr6:111367166 chr6:110962142,chr6:110962132 NA NA chr6:111688359,chr6:111688369 chr6:111283345,chr6:111283335 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DNA_pol_B_exo1|95-191|1.2e-11^DUF4683|480-656|4^DUF4683|747-1133|2.5e-179^DUF4683|1186-1224|4^DUF4683|1527-1592|0.04^DUF4683|1692-1780|0.5^DNA_pol_B_exo1|2273-2484|3.8e-19^DNA_pol_B|2550-3000|1.3e-106^zf-C4pol|3042-3109|5.1e-16 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.33Mb] 10 6 10 2.61 INCL_NON_REF_SPLICE YES_LDAS 0.1693 GT 1.8892 AG 1.8892 ENST00000358835.7 1-6162 ENST00000329970.8 248-642 chr6|-|[2]111367626-111368028[2]|[1]111372596-111376757[1]|[0]111377701-111377843[2]|[1]111379982-111380219[1]|[0]111381325-111381444[1]|[0]111387765-111387913[2]|[1]111388001-111388085[1]|[0]111389106-111389210[1]|[0]111390086-111390180[2]|[1]111392876-111392972[1]|[0]111405470-111405630[2]|[1]111411480-111411554[2]|[1]111416283-111416472[1]|[0]111482750-111482888[0]<==>chr6|+|[1]110962392-110962505[0]|[1]110967510-110967790[2] atgttttcagtaaggatagtgactgcagactactacatggccagcccgctgcaggggctggatacctgccaatcccccctcacccaggcccctgtcaagaaggtgccggtggtgcgagtcttcggagcgaccccggcaggtcagaagacatgtcttcatctacatggcatctttccttacctctatgtgccatacgatggttatggacagcagccagaaagctatctttctcagatggcattcagtatcgacagagcacttaatgtggctttaggcaatccatcttccactgctcagcatgtgttcaaagtgtcattagtatcaggaatgcctttttatggttatcatgagaaggaaagacactttatgaagatctatctttacaatcctacaatggtgaaaaggatatgtgaacttttgcaaagcggagccataatgaataaattttaccagcctcatgaagcgcatattccctacctcctacagctcttcattgactacaatctttatggcatgaatttaataaatctggctgctgtcaagttccgaaaagcaagaaggaaaagtaatacattgcatgcaactggatcctgcaagaatcatttatcaggaaattctcttgctgatactttatttcggtgggaacaagatgaaataccaagctctttaatattggaaggtgttgaaccacagagtacatgtgaattagaagtggatgctgtagctgctgatatcttaaatcgtctggacattgaagctcaaattggtggaaaccctggtctacaggccatatgggaagatgaaaagcaacggcgaagaaacagaaatgaaacttctcaaatgagccaacctgagtcacaagatcacaggtttgtgccagcaacagaaagtgaaaaaaaatttcagaagagacttcaggaaattctcaaacagaatgatttctctgtaacattatcaggatctgtggactacagcgatggatcccaggagttctctgctgagttaacattgcactctgaggttctgtctcctgaaatgcttcagtgtacaccagccaatatggtagaagttcacaaagacaaagagtcaagcaaaggtcacactagacacaaagtggaagaagctcttattaatgaagaagcaattttgaaccttatggaaaatagtcagacttttcagcctttgacccaaagactgagtgagtcacctgttttcatggacagtagtcctgatgaggctctggtacatcttcttgctggtttggaaagtgatggatatcggggggaaagaaataggatgccatcaccatgtcgctcctttggaaataataaatatccacaaaatagtgatgatgaagaaaatgaaccacagattgaaaaagaggaaatggagcttagtttggtgatgtcccagagatgggacagcaatattgaagaacattgtgccaaaaagagatcactgtgcagaaatacccacagaagttcaactgaagatgatgactcatcttcaggagaagaaatggaatggagtgataacagtttgcttctagccagtctttctatacctcagttagatggaactgcagatgaaaatagtgacaatccattgaacaatgaaaattctagaacccactcttctgtaattgcaacaagcaagctttcagttaaaccctccatctttcacaaagatgctgctacattagaaccctcatcttctgctaagattacctttcagtgtaaacacacaagtgccctttcttcccatgttttgaacaaggaagatttaattgaagacctttcacagacaaacaaaaatacagaaaaaggtctagataactcagtcacttcttttacaaacgaaagcacttattctatgaaataccctggatctttaagcagtactgttcattcagaaaattctcataaagagaatagtaagaaagagatcctcccagtatcttcctgtgaaagtagtatttttgattatgaagaagatattccatctgttacaagacaagtaccaagtagaaaatatacaaacattagaaaaatcgaaaaggattccccttttatacatatgcaccgtcaccctaacgagaatacattgggcaaaaattctttcaacttttctgacttaaatcattcaaaaaataaagtatcctctgaaggaaatgaaaaaggaaacagcacagctctgagtagtttattcccttcatcatttactgaaaattgtgaattactgtcatgctcaggggagaatagaactatggtgcattctcttaatagcactgctgatgaaagtggactaaataaacttaaaattaggtatgaagaatttcaagaacataaaacagaaaagccaagcctcagccagcaagcagcacactatatgttttttcccagtgttgttctttctaactgtcttactagaccacagaaactatctcctgtcacatataaattacaacctggcaataaaccatcccggttaaaattgaataaaaggaaacttgcaggtcatcaggagacttctaccaaaagtagtgagactggatccacaaaagataattttatacaaaataatccttgtaatagtaatcctgagaaggataatgcattggctagtgatttaactaaaaccactcgtggagcttttgaaaataaaacacccacagatggttttatagactgtcactttggagatggaacgttagaaactgagcagtcctttggactatatggaaataaatacacacttagagccaaacgcaaggtaaattatgagactgaagacagtgagtcaagttttgtaactcacaactcaaaaattagtctacctcatcccatggaaattggtgaaagtttagatggaactctcaaatcccgaaaacgaagaaaaatgtctaaaaagctgccccctgtcatcataaagtatattattattaatagatttagagggagaaaaaatatgcttgtgaagctaggaaaaatagactctaaagaaaaacaagtaatattaacagaagaaaaaatggaactatataaaaagcttgcacctttgaaggacttttggccaaaagttcccgactcccctgcaaccaaatatcccatttatccactaacaccaaagaaaagtcacagaagaaagtcaaaacataaatctgctaagaaaaaaactggtaaacaacaaaggacaaataatgaaaatattaaaagaactttgtctttcaggaaaaaacggtcacatgctattctttctcctccctcaccatcttacaatgctgaaaccgaagattgtgacctgaattatagtgatgttatgtctaaactaggttttctttctgagagaagcacaagtcccataaattcttctccacctcgctgctggtctcccacagatccaagagctgaagaaatcatggctgctgcagaaaaagaggcaatgctttttaagggtcctaatgtatataagaagactgttaattctcgtataggaaaaactagtcgcgcaagagcacagattaagaaatcaaaagcaaagcttgctaatccctctatagttactaagaaaaggaacaaacgaaatcagacaaataaactagtagatgatggaaaaaagaaaccaagagcaaaacaaaaaacaaatgagaaaggtacatcgagaaagcatacaacacttaaggatgaaaaaataaaatctcagtctggtgctgaggttaagtttgtactgaaacaccagaatgtgtctgaatttgcaagtagttctggaggctctcaactactttttaaacagaaagatatgccactaatgggctctgctgtagatcatcccctttctgcttccctacccactggaattaatgcacaacagaagttatctggctgcttttcttctttcttagaaagcaagaagtctgtagatttgcagacattccccagttcacgagatgatttgcatccatcagttgtttgtaattctataggacctggagtctcaaaaattaatgttcaaaggcctcataatcaaagtgctatgtttactctaaaggaatcaacgttaattcaaaaaaatatatttgacctttccaatcatttatctcaggtagcacagaatacacagatatcttctggtatgtcctcaaagatagaagataatgcaaataatatacaaagaaactatttgtcatcaatcggaaagttaagtgaatatcgcaattccctagaatcaaagctggaccaagcatatacccctaattttttgcattgcaaagacagtcagcagcagattgtgtgcatagcggaacagtcaaagcacagtgaaacttgttctccgggaaatacagcttcagaggaaagccaaatgcctaataattgctttgtaacttccttgagaagtccaatcaaacaaatagcatgggagcaaaagcaaaggggctttattttagatatgtcaaattttaaacctgaaagagtaaaaccgaggtcgttatcagaagcaatttcacaaaccaaagcactttctcagtgtaaaaatcgaaatgtgtcaacaccttcagcatttggtgaaggacagtctggactggcagttctaaaagaattgttacaaaaaagacagcagaaagcacaaaatgcaaatactacacaagacccattatccaataaacatcaaccaaataaaaatatttctggttcccttgagcataacaaagcaaataaacggacacgatcggtaacgtccccaagaaaacctcgaactcccagaagtacaaaacaaaaagaaaaaatccccaaacttctcaaagtagactctttaaatttacaaaactctagccagttggataactctgtatcagatgatagtcccatctttttttcagatccaggctttgaaagttgttactcacttgaagatagtttatctcctgaacataattataattttgatattaacacaataggtcagactggattttgtagcttttattctggaagtcagtttgtcccagctgatcagaatttgcctcagaagttcctaagtgatgctgttcaggatctttttccaggacaagctatagaaaaaaatgagtttttaagtcatgacaaccagaaatgtgatgaagacaagcatcataccacagactcagcctcatggattagatctggtactttaagtcctgaaatttttgagaagtcaaccatagatagcaatgagaatcgtcgccacaaccagtggaaaaatagctttcatcctctaacaactcggtctaactcaataatggattctttctgtgttcagcaggcagaagactgtctaagtgaaaaatctagattgaataggagttcagtaagcaaagaagtgtttcttagcctcccacagccaaacaattcagactggattcaaggtcacaccagaaaagaaatgggacagtctcttgactcagccaatacctcttttactgcaatactctcctcccctgatggtgaacttgtagacgtggcctgtgaagatttagaactgtatgtttcaagaaacaatgatatgttgacaccaactcctgatagttcaccaagatctactagctctccttcacaatctaaaaatggcagcttcacccctcgaactgctaacattctgaaaccacttatgtcccccccaagtagggaagaaattatggcaactttgttggatcatgacctgtctgagactatttaccaggaaccattttgcagtaatccttctgatgtaccagaaaagcccagggagattggtggacggctcctcatggtagaaactcgacttgcaaatgatctggctgagtttgagggagacttttccttggaaggacttcgtctttggaaaacagcattctcagcaatgactcagaatccaaggccagggtcaccccttcgcagtggccaaggagttgtcaataaagggtcaagtaatagccctaagatggttgaagataaaaaaattgtgattatgccttgcaaatgtgccccaagtcgacaactggttcaagtgtggcttcaagccaaagaagaatacgaacgttccaagaaactgcctaaaaccaagccaactggagttgtaaaatctgctgagaactttagctcttcagttaacccagatgacaaacctgtagtgcctccaaaaatggatCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAGAACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTATCGACCCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAATCTTTGGAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGAAATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGGAAACTCAAATGCTGCCTTAG MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARRKSNTLHATGSCKNHLSGNSLADTLFRWEQDEIPSSLILEGVEPQSTCELEVDAVAADILNRLDIEAQIGGNPGLQAIWEDEKQRRRNRNETSQMSQPESQDHRFVPATESEKKFQKRLQEILKQNDFSVTLSGSVDYSDGSQEFSAELTLHSEVLSPEMLQCTPANMVEVHKDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLLAGLESDGYRGERNRMPSPCRSFGNNKYPQNSDDEENEPQIEKEEMELSLVMSQRWDSNIEEHCAKKRSLCRNTHRSSTEDDDSSSGEEMEWSDNSLLLASLSIPQLDGTADENSDNPLNNENSRTHSSVIATSKLSVKPSIFHKDAATLEPSSSAKITFQCKHTSALSSHVLNKEDLIEDLSQTNKNTEKGLDNSVTSFTNESTYSMKYPGSLSSTVHSENSHKENSKKEILPVSSCESSIFDYEEDIPSVTRQVPSRKYTNIRKIEKDSPFIHMHRHPNENTLGKNSFNFSDLNHSKNKVSSEGNEKGNSTALSSLFPSSFTENCELLSCSGENRTMVHSLNSTADESGLNKLKIRYEEFQEHKTEKPSLSQQAAHYMFFPSVVLSNCLTRPQKLSPVTYKLQPGNKPSRLKLNKRKLAGHQETSTKSSETGSTKDNFIQNNPCNSNPEKDNALASDLTKTTRGAFENKTPTDGFIDCHFGDGTLETEQSFGLYGNKYTLRAKRKVNYETEDSESSFVTHNSKISLPHPMEIGESLDGTLKSRKRRKMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWPKVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNNENIKRTLSFRKKRSHAILSPPSPSYNAETEDCDLNYSDVMSKLGFLSERSTSPINSSPPRCWSPTDPRAEEIMAAAEKEAMLFKGPNVYKKTVNSRIGKTSRARAQIKKSKAKLANPSIVTKKRNKRNQTNKLVDDGKKKPRAKQKTNEKGTSRKHTTLKDEKIKSQSGAEVKFVLKHQNVSEFASSSGGSQLLFKQKDMPLMGSAVDHPLSASLPTGINAQQKLSGCFSSFLESKKSVDLQTFPSSRDDLHPSVVCNSIGPGVSKINVQRPHNQSAMFTLKESTLIQKNIFDLSNHLSQVAQNTQISSGMSSKIEDNANNIQRNYLSSIGKLSEYRNSLESKLDQAYTPNFLHCKDSQQQIVCIAEQSKHSETCSPGNTASEESQMPNNCFVTSLRSPIKQIAWEQKQRGFILDMSNFKPERVKPRSLSEAISQTKALSQCKNRNVSTPSAFGEGQSGLAVLKELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHNKANKRTRSVTSPRKPRTPRSTKQKEKIPKLLKVDSLNLQNSSQLDNSVSDDSPIFFSDPGFESCYSLEDSLSPEHNYNFDINTIGQTGFCSFYSGSQFVPADQNLPQKFLSDAVQDLFPGQAIEKNEFLSHDNQKCDEDKHHTTDSASWIRSGTLSPEIFEKSTIDSNENRRHNQWKNSFHPLTTRSNSIMDSFCVQQAEDCLSEKSRLNRSSVSKEVFLSLPQPNNSDWIQGHTRKEMGQSLDSANTSFTAILSSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRSTSSPSQSKNGSFTPRTANILKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLANDLAEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRSGQGVVNKGSSNSPKMVEDKKIVIMPCKCAPSRQLVQVWLQAKEEYERSKKLPKTKPTGVVKSAENFSSSVNPDDKPVVPPKMDLIQKAIIKQC*NINAIQ*RSSA*QELS*QRRRKEKKT*VGWNGCK*RIMISPIDPT*FVTFYMKMKTKKW*LQPQINLWNWKRKRFK*TTVQT*VVNRRNQCTWK*KILVLLLIYLLRQKVLFLWKLKCCL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28079 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:771333:- chr11:767220-777488:- chr11:771333:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DJ-1_PfpI|75-132|1.1e-06^DJ-1_PfpI|173-203|0.025 none ["TCGA_StarF2019","CCLE_StarF2019"] 10 14 10 3.33 ONLY_REF_SPLICE YES_LDAS 0.179 GT 1.8256 AG 1.9086 ENST00000319863.13 1-544 ENST00000528521.1 201-217 chr11|-|[0]771333-771426[0]|[2]772427-772521[1]|[0]773522-773629[1]|[0]774008-774113[0]|[2]775066-775142[1]|[0]777399-777462[0]<==>chr11|-|[2]870483-870499[1] atggcgtccgagcggctccctaacaggcccgcctgtctgctcgtggccagcggcgccgccgaaggtgtgtcggcccagtccttcctccactgtttcacgatggccagcaccgccttcaacctgcaggtggccacccctggggggaaagccatggaatttgtggatgtgactgagagcaatgcacgctgggtgcaagacttccgcctcaaggcttacgccagccccgccaagctcgagtccatcgatggtgcccggtaccatgccctcctgatccccagctgtcctggggccctgaccgacctggccagcagtggctccctggcccgtatcctgcagcacttccactctgagagcaaacccatctgcgccgtcggccacggtgtcgccgccctgtgctgtgccaccaacgaggacagatcctgggtgttcgacagctacagcctgacagggccctctgtgtgtgagctcgtcagggcccccggcttcgcccgcctgccgctcgtggtggaggacttcgtgaaggattcgggcgcctgcttcagtgGTACATCCAGACACTGA MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFSGTSRH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28080 ITGBL1::ENSG00000263551 ENSG00000198542.15::ENSG00000263551.6 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ITGBL1 ENSG00000198542.15 protein_coding + + chr13:101452593-101720856:+ chr13:101598299:+ chr13:102104944-102373206:+ chr13:102250649:+ ENSG00000263551 ENSG00000263551.6 lncRNA + + chr18:976589-1310018:+ chr18:1159179:+ chr18:976590-1310019:+ chr18:1159180:+ chr13:101643589 chr18:1138046 NA NA chr13:102295939 chr18:1138047 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.2014 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28082 YTHDC2::ENSG00000249746 ENSG00000047188.16::ENSG00000249746.3 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA YTHDC2 ENSG00000047188.16 protein_coding + + chr5:113513694-113595285:+ chr5:113581709:+ chr5:112849391-112930982:+ chr5:112917406:+ ENSG00000249746 ENSG00000249746.3 lncRNA - - chr5:96213263-96215075:- chr5:96214967:- chr5:95548967-95550779:- chr5:95550671:- chr5:113582773,chr5:113582774 chr5:96215266,chr5:96215266 NA NA chr5:112918470,chr5:112918471 chr5:95550970,chr5:95550970 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 6 9 6 INCL_NON_REF_SPLICE YES_LDAS 0.2014 GT 1.9219 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28083 HEY2::LINC02523 ENSG00000135547.9::ENSG00000224506.3 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA HEY2 ENSG00000135547.9 protein_coding + + chr6:125747664-125761269:+ chr6:125754546:+ chr6:126068810-126082415:+ chr6:126075692:+ LINC02523 ENSG00000224506.3 lncRNA + + chr6:125674353-125720218:+ chr6:125717458:+ chr6:125995499-126041364:+ chr6:126038604:+ chr6:125758908,chr6:125758907 chr6:125711909,chr6:125711905 NA NA chr6:126080054,chr6:126080053 chr6:126033055,chr6:126033051 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 9 8 9 8 ONLY_REF_SPLICE YES_LDAS 0.2282 GT 1.7056 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28085 SMG1::ENSG00000259925 ENSG00000157106.18::ENSG00000259925.1 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SMG1 ENSG00000157106.18 protein_coding - - chr16:18804860-18926408:- chr16:18925950:- chr16:18816182-18937730:- chr16:18937272:- ENSG00000259925 ENSG00000259925.1 lncRNA - - chr16:19343647-19401693:- chr16:19396249:- chr16:19354969-19413015:- chr16:19407571:- chr16:18909834,chr16:18909837 chr16:19399401,chr16:19399401 NA NA chr16:18921156,chr16:18921159 chr16:19410723,chr16:19410723 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 4 8 3.17 ONLY_REF_SPLICE YES_LDAS 0.15 GT 1.9329 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase SMG1 Atypical PIKK SMG1 Q96Q15 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28086 PIK3R3::MKNK1 ENSG00000117461.15::ENSG00000079277.22 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3R3 ENSG00000117461.15 protein_coding - - chr1:46040140-46133036:- chr1:46080642:- chr1:46505812-46598708:- chr1:46546314:- MKNK1 ENSG00000079277.22 protein_coding - - chr1:46557407-46616843:- chr1:46584803:- chr1:47023079-47082515:- chr1:47050475:- chr1:46080223,chr1:46080226 chr1:46585159,chr1:46585159 NA NA chr1:46545895,chr1:46545898 chr1:47050831,chr1:47050831 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.42Mb] 8 5 8 3.33 ONLY_REF_SPLICE YES_LDAS 0.1521 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN MAP kinase-interacting serine/threonine-protein kinase 1 CAMK MAPKAPK MNK Q9BUB5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Phosphoinositide-3-kinase regulatory subunit 3 2 epithelial ovarian cancer, glioblastoma, pancreatic ductal adenocarcinoma epithelial, other amplification, large_deletion, frameshift, missense FALSE NA NA NA NA NA NA NA NA NA 28087 SLC22A17::MYH7 ENSG00000092096.19::ENSG00000092054.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 46 TRUE 71 TRUE 30 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23349272:- chr14:23815523-23822121:- chr14:23818481:- MYH7 ENSG00000092054.13 protein_coding - - chr14:23412740-23435660:- chr14:23434249:- chr14:23881949-23904869:- chr14:23903458:- chr14:23348495,chr14:23348497 chr14:23435545,chr14:23435544 NA NA chr14:23817704,chr14:23817706 chr14:23904754,chr14:23904753 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.06Mb];LOCAL_REARRANGEMENT:-:[59826] 8 7 8 3.45 ONLY_REF_SPLICE YES_LDAS 0.1537 GT 1.9329 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-208b chr14:23417987-23418063:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28089 BCAS4::THAP8 ENSG00000124243.19::ENSG00000161277.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 53 TRUE 80 TRUE 37 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50830380:+ chr20:49411431-49493714:+ chr20:49446917:+ THAP8 ENSG00000161277.11 protein_coding - - chr19:36034984-36054739:- chr19:36039718:- chr19:36525886-36545641:- chr19:36530620:- chr20:50837778,chr20:50837774 chr19:36041817,chr19:36041821 NA NA chr20:49454315,chr20:49454311 chr19:36532719,chr19:36532723 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["BCAS4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr19] 7 1 7 0.5 ONLY_REF_SPLICE YES_LDAS 0.1007 GT 1.8295 AG 1.8062 ENST00000358791.9 1-354 ENST00000292894.2 277-825 chr20|+|[0]50794994-50795173[2]|[0]50818211-50818282[2]|[0]50830279-50830380[2]<==>chr19|-|[2]36035440-36035592[0]|[2]36039323-36039718[0] atgcagcggaccgggggcggggctccgaggcccgggcgcaaccacgggctcccaggcagcctccgccagccggaccccgtcgccctcctgatgctgctcgtggacgctgatcagccggagcccatgcgcagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccgaggcgaaggaggtggaggagaccatcgagggcatgctcctcaggctggaagagttttgcagcctggctgacctgatcaggagtgatacttcacagatcctggaggaaaacatcccagtccttaaggccaaactgacagaaatgcgtggcatctatgccaaagtggaccggctagagAGTCAGCGGAGGACCCGAAGCACCCAGAAGCCAGTCTCGCCGCCGCCTCCCCTACAGAAGAATACACCCCTGCCCCAGAGCCCTGCCATCCCAGTCTCTGGCCCAGTGCGCCTAGTGGTGCTGGGCCCCACATCGGGGAGCCCCAAGACTGTGGCCACCATGCTCCTGACCCCCCTGGCCCCTGCGCCAACTCCTGAGCGGTCACAACCTGAAGTCCCTGCCCAACAGGCCCAGACCGGGCTGGGCCCAGTGCTGGGAGCACTGCAACGCCGGGTGCGGAGGCTGCAACGGTGCCAGGAGCGGCACCAGGCGCAGCTGCAGGCCCTGGAACGGCTGGCACAGCAGCTACACGGGGAGAGCCTGCTGGCACGGGCACGCCGGGGTCTGCAGCGCCTGACAACAGCCCAGACCCTTGGACCTGAGGAATCCCAAACCTTCACCATCATCTGTGGAGGGCCTGACATAGCCATGGTCCTTGCCCAGGACCCTGCACCTGCCACAGTGGATGCCAAGCCGGAGCTCCTGGACACTCGGATCCCCAGTGCATAA MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLESQRRTRSTQKPVSPPPPLQKNTPLPQSPAIPVSGPVRLVVLGPTSGSPKTVATMLLTPLAPAPTPERSQPEVPAQQAQTGLGPVLGALQRRVRRLQRCQERHQAQLQALERLAQQLHGESLLARARRGLQRLTTAQTLGPEESQTFTIICGGPDIAMVLAQDPAPATVDAKPELLDTRIPSA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28090 KMT2B::DMRT1 ENSG00000272333.8::ENSG00000137090.12 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 51 FALSE NA FALSE NA KMT2B ENSG00000272333.8 protein_coding + + chr19:35717973-35738880:+ chr19:35721804:+ chr19:36208875-36229781:+ chr19:36212706:+ DMRT1 ENSG00000137090.12 protein_coding + + chr9:841690-969090:+ chr9:967985:+ chr9:841690-969090:+ chr9:967985:+ chr19:35722440,chr19:35722440,chr19:35722440,chr19:35722440 chr9:924629,chr9:924626,chr9:924602,chr9:924580 NA NA chr19:36213342,chr19:36213342,chr19:36213342,chr19:36213342 chr9:924629,chr9:924626,chr9:924602,chr9:924580 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-CXXC|960-1005|1.7e-15^zf-HC5HC2H|961-986|6^zf-HC5HC2H_2|964-987|7^zf-HC5HC2H|1202-1237|0.76^zf-HC5HC2H_2|1203-1233|0.65^PHD|1204-1249|3.3e-08^PHD_4|1210-1249|0.091^zf-HC5HC2H_2|1216-1280|7^zf-CXXC|1246-1268|7^zf-HC5HC2H|1248-1301|3.9^PHD_4|1249-1301|0.00044^PHD|1252-1300|2.7e-11^zf-CXXC|1296-1307|0.73^zf-CXXC|1334-1360|7^PHD_4|1337-1380|0.0077^PHD|1338-1393|4e-10^zf-HC5HC2H|1340-1369|0.18^zf-HC5HC2H_2|1340-1369|1.2^PHD|1428-1436|3.2^Bromodomain|1444-1471|7.4e-05^zf-CXXC|1579-1586|4.2^zf-HC5HC2H_2|1580-1683|1.4e-12^PHD_4|1580-1593|5^PHD|1604-1612|1.7^zf-HC5HC2H|1608-1686|1.3e-14^zf-CXXC|1640-1648|7^PHD|1641-1669|7^FYRN|1729-1782|9e-20 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr9] 7 1 7 1 ONLY_REF_SPLICE YES_LDAS 0.1074 GT 1.8892 AG 1.7968 ENST00000692961.1 1-2457 ENST00000382276.8 968-1122 chr19|+|[0]35718019-35718381[2]|[0]35719469-35719541[0]|[1]35719784-35721804[2]<==>chr9|+|[1]967985-968139[2] atggcggcggcggcgggcggcggcagttgccccgggcctggctccgcgcggggccgcttcccgggccggccgcggggcgccggcgggggcgggggccgcggcggacggggcaacggggccgaaagagtgcgggtagctctgcggcgcggcggtggcgcgacggggccgggcggagccgagcccggggaggacacggccctgctccgtttgctggggctccgccggggcctgcgccggctccgccgcctgtgggccggcccgcgggtccagcggggccggggacggggtcggggccggggctggggcccgagtcgaggctgcgtgccggaggaggagagcagtgacggggaatccgacgaggaggagtttcagggttttcattcagatgaagatgtggcccccagttccctgcgctctgcgctccgatcccagcgaggtcgagcgccccgaggtcggggtcgcaagcataagacgaccccccttcctcctcctcgcctagcagatgtggctcctacccccccaaagacccctgcccggaaacggggtgaggaaggcacagaacggatggtgcaggcactgactgaacttctccggcgggcccaggcaccccaagcaccccggagccgggcatgtgagccctccaccccccggcggtctcggggacggcccccaggacggccagcaggcccctgcaggaggaagcagcaagcagtagtggtggcagaagcagctgtgacaatccccaaacctgagcccccacctcctgtggttccagtgaaacatcagactggcagctggaaatgcaaggaggggcccggtccaggacctgggacccccaggcgtggaggacagtcaagccgtggaggccgtggaggcaggggccgcggccgaggtggtgggctcccctttgtgatcaagtttgtttcaagggccaaaaaagtaaagatgggacaattgtccttgggactcgaatcaggtcaaggtcaaggtcaacatgaggaaagttggcaggatgtcccccaaagaagagttggatctggacagggagggagcccttgctggaaaaagcaggaacagaagctggatgacgaggaagaagagaagaaagaagaagaagaaaaagacaaggagggagaagagaaggaagaaagagctgtagctgaggagatgatgccagctgcggaaaaggaagaggcaaagctgccaccaccgcctctgactcctccagccccttcacctcctccacccctcccacccccttcgacatctcctccacccccactctgccctccaccaccacccccagtgtccccaccacctctaccatcccctccaccgcctcctgcccaagaggagcaggaggaatcccctcctcctgtggtcccagctacgtgctccaggaagaggggccggcctcccctgactcccagccagcgggcggagcgggaagctgctcgggcagggccagagggcacctctcctcccactccaacccccagcaccgccacgggaggccctccggaagacagtcccaccgtggcccccaaaagcaccaccttcctgaagaatatccggcagtttattatgcctgtggtgagtgcccgctcctcccgtgtcatcaagacaccccggcgatttatggatgaagacccccccaaacccccaaaggtggaggtctcacctgtcctgcgacctcccattaccacctccccacctgttccccaggagccagcaccagtcccctctccaccacgtgccccaactcctccatctaccccagttccactccctgagaagagacggtccatcctaagggaacccacatttcgctggacctcactgacccgggagctgccccctcctcccccagcccctccacctcccccggccccctccccaccccctgctcctgccacctcctcccggaggcccctactccttcgggcccctcagtttaccccaagcgaagcccacctgaagatctacgaatcggtgcttactcctcctcctcttggggctcctgaagcccctgagccagagcctcctcctgccgatgactctccagctgagcctgagcctcgggcagtgggccgcaccaaccacctcagcctgcctcgattcgcccctgtggtcaccactcctgttaaggccgaggtgtcccctcacggggctccagctctgagcaacgggccacagacacaggctcagctactgcagcccctgcaggccttgcaaacccagctcctgccccaggcactaccgccaccacagccacagctgcagccaccgccgtcaccacagcagatgcctcccctggaaaaagcccggattgcgggcgtgggttccttgccgctgtctggggtagaggagaagatgttcagcctcctcaagagagccaaagtgcagctattcaagatcgatcagcagcagcagcagaaggtggcagcttccatgccgTATTCTCGCCGCCCAGCAGTCAAGATTCTGGCTTGGTTTCCCTCTCGAGCAGCTCTCCTATTAGTAACAAGAGCACAAAGGCAGTGCTTGAATGTGAGCCTGCGTCGGAGCCCAGCAGCTTCACAGTCACTCCCGTCATCGAGGAGGACGAGTGA MAAAAGGGSCPGPGSARGRFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGATGPGGAEPGEDTALLRLLGLRRGLRRLRRLWAGPRVQRGRGRGRGRGWGPSRGCVPEEESSDGESDEEEFQGFHSDEDVAPSSLRSALRSQRGRAPRGRGRKHKTTPLPPPRLADVAPTPPKTPARKRGEEGTERMVQALTELLRRAQAPQAPRSRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSWKCKEGPGPGPGTPRRGGQSSRGGRGGRGRGRGGGLPFVIKFVSRAKKVKMGQLSLGLESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKLDDEEEEKKEEEEKDKEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPPPLPSPPPPPAQEEQEESPPPVVPATCSRKRGRPPLTPSQRAEREAARAGPEGTSPPTPTPSTATGGPPEDSPTVAPKSTTFLKNIRQFIMPVVSARSSRVIKTPRRFMDEDPPKPPKVEVSPVLRPPITTSPPVPQEPAPVPSPPRAPTPPSTPVPLPEKRRSILREPTFRWTSLTRELPPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQFTPSEAHLKIYESVLTPPPLGAPEAPEPEPPPADDSPAEPEPRAVGRTNHLSLPRFAPVVTTPVKAEVSPHGAPALSNGPQTQAQLLQPLQALQTQLLPQALPPPQPQLQPPPSPQQMPPLEKARIAGVGSLPLSGVEEKMFSLLKRAKVQLFKIDQQQQQKVAASMPYSRRPAVKILAWFPSRAALLLVTRAQRQCLNVSLRRSPAASQSLPSSRRTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28091 NUTM2B-AS1::RAPGEF4 ENSG00000225484.7::ENSG00000091428.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 48 FALSE NA FALSE NA NUTM2B-AS1 ENSG00000225484.7 lncRNA - - chr10:79661394-79826594:- chr10:79808759:- chr10:81421150-81586350:- chr10:81568515:- RAPGEF4 ENSG00000091428.18 protein_coding + + chr2:172735274-173052893:+ chr2:172795025:+ chr2:173600002-173917621:+ chr2:173659753:+ chr10:79807563,chr10:79807569 chr2:172791484,chr2:172791478 NA NA chr10:81567319,chr10:81567325 chr2:173656212,chr2:173656206 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr2] 7 3 6.75 2.77 ONLY_REF_SPLICE YES_LDAS 0.1278 GT 1.8295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28094 CHST3::AGPAT3 ENSG00000122863.6::ENSG00000160216.21 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 49 FALSE NA FALSE NA CHST3 ENSG00000122863.6 protein_coding + + chr10:71964395-72013558:+ chr10:71964694:+ chr10:73724153-73773316:+ chr10:73724452:+ AGPAT3 ENSG00000160216.21 protein_coding + + chr21:43865223-43987592:+ chr21:43978046:+ chr21:45285104-45407473:+ chr21:45397927:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr21] 7 3 7 3 ONLY_REF_SPLICE YES_LDAS 0.1343 GT 1.3996 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28096 SLX4::ADCY9 ENSG00000188827.12::ENSG00000162104.10 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3606474:- chr16:3631182-3661607:- chr16:3656475:- ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:3993510:- chr16:4003388-4166443:- chr16:4043511:- chr16:3605416,chr16:3605418 chr16:4005220,chr16:4005219 NA NA chr16:3655417,chr16:3655419 chr16:4055221,chr16:4055220 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BTB-PARTIAL|684-760~|1e-14 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.34Mb] 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1477 GT 1.6729 AG 1.7465 ENST00000294008.4 1-760 ENST00000571467.1 177-217 chr16|-|[0]3606474-3606698[1]|[0]3608430-3608964[0]<==>chr16|-|[2]3993470-3993510[1] atgaaactgagtgtgaatgaggctcagctaggcttctacttgggttcactttctcatctgtctgcctgtcctgggattgaccctcgctcctctgaagaccagcctgaaagccttaaaactggtcagatgatggatgagtctgatgaggactttaaagaactctgcgctagctttttccaaagggtgaaaaaacatggaatcaaggaagtgtcaggagaaaggaagacacaaaaggctgcctcaaacggcactcagataagaagcaaattgaaaaggaccaaacaaactgctaccaagaccaaaacccttcaaggccctgcagagaagaaacctccgtctggcagccaggcccctaggactaaaaagcaaagggtaaccaaatggcaagcaagtgaaccggcccactctgtgaatggggaggggggtgtgcttgcctctgctccagatccacctgtgctccgggaaacagcacaaaacacccagacgggtaaccagcaagaaccatcgccaaacctttccagagagaaaaccagagagaatgtgcccaacagcgactcccagcctcctccttcctgtttgacaacagcagtgccaagtccctccaaaccccgcacagcacaattggtcctacagcgaatgcagcagttcaagagagcagaccccgagcgtttgagacacgcttcagaagagtgctccctcgaggctgcgcgggaagaaaatgtcccaaaggatcctcaagaggagatgatggcggggaatgACCTGCCCTTCGTGCGGAATCACATTTGCTCCCAAATCTGA MKLSVNEAQLGFYLGSLSHLSACPGIDPRSSEDQPESLKTGQMMDESDEDFKELCASFFQRVKKHGIKEVSGERKTQKAASNGTQIRSKLKRTKQTATKTKTLQGPAEKKPPSGSQAPRTKKQRVTKWQASEPAHSVNGEGGVLASAPDPPVLRETAQNTQTGNQQEPSPNLSREKTRENVPNSDSQPPPSCLTTAVPSPSKPRTAQLVLQRMQQFKRADPERLRHASEECSLEAAREENVPKDPQEEMMAGNDLPFVRNHICSQI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28097 WDR76::PDIA3 ENSG00000092470.12::ENSG00000167004.14 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 54 FALSE NA FALSE NA WDR76 ENSG00000092470.12 protein_coding + + chr15:43826980-43868412:+ chr15:43836216:+ chr15:44119178-44160610:+ chr15:44128414:+ PDIA3 ENSG00000167004.14 protein_coding + + chr15:43746394-43773279:+ chr15:43756649:+ chr15:44038592-44065477:+ chr15:44048847:+ chr15:43836903,chr15:43836900 chr15:43753866,chr15:43753860 NA NA chr15:44129101,chr15:44129098 chr15:44046064,chr15:44046058 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SPATIAL|72-118|0.0014^SPATIAL|131-205|0.0021^WD40|313-327|0.19^WD40|353-387|3.3e-06^WD40|415-430|0.22^WD40|451-468|0.84^WD40|486-524|1.6e-05^WD40-PARTIAL|582-608~|0.035 none ["GUO2018CR_TCGA","DEEPEST2019","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.05Mb];LOCAL_REARRANGEMENT:+:[53684] 5 5 4.33 4.83 ONLY_REF_SPLICE YES_LDAS 0.1229 GT 1.7465 AG 1.9329 ENST00000263795.11 1-608 ENST00000687211.1 168-231 chr15|+|[0]43827033-43827092[2]|[0]43827965-43828366[2]|[0]43835061-43835150[2]|[0]43836161-43836216[1]<==>chr15|+|[2]43756649-43756712[2] atgtccaggtcgggcgcggcggctgagaaggcggactccagacagcgaccccagatgaaggtaaatgaatataaagaaaatcaaaacatcgcttatgtgtctctgagaccagcacagactacagttttaataaaaacagctaaggtctatcttgcccccttttcactcagtaattaccagctagaccagcttatgtgccccaaatccctatcagaaaagaattctaacaatgaagtggcgtgtaagaagactaaaataaagaaaacttgcagaaggattatacctccaaagatgaaaaacacatcttccaaggcagaatccacgctgcaaaattcatcctcagctgttcatactgaaagtaacaagctacaacccaagagaacggcagatgcgatgaatctcagtgttgatgtggaaagtagtcaggatggagacagtgatgaagataccacaccatccctggatttttcgggattgtcaccctacgaaaggaagagactgaagaacatatcagaaaacgcagacttttttgcttctcttcagttgtctgagtctgctgcaagactccgtgaaatgatagagaagagacagcctcctaaatccaaaagGTTGATTGCACTGCCAACACTAACACCTGTAATAAATATGGAGTCAGTGGATATCCAACCCTGA MSRSGAAAEKADSRQRPQMKVNEYKENQNIAYVSLRPAQTTVLIKTAKVYLAPFSLSNYQLDQLMCPKSLSEKNSNNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRLIALPTLTPVINMESVDIQP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST no_match 43836216 TRUE 43753824 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28098 BCAS4::THAP8 ENSG00000124243.19::ENSG00000161277.11 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 52 TRUE 80 TRUE 37 BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50830380:+ chr20:49411431-49493714:+ chr20:49446917:+ THAP8 ENSG00000161277.11 protein_coding - - chr19:36034984-36054739:- chr19:36040136:- chr19:36525886-36545641:- chr19:36531038:- chr20:50837778,chr20:50837774 chr19:36041817,chr19:36041821 NA NA chr20:49454315,chr20:49454311 chr19:36532719,chr19:36532723 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["BCAS4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr19] 5 3 5 2.5 ONLY_REF_SPLICE YES_LDAS 0.1007 GT 1.8295 AG 1.9899 ENST00000358791.9 1-354 ENST00000607730.1 70-126 chr20|+|[0]50794994-50795173[2]|[0]50818211-50818282[2]|[0]50830279-50830380[2]<==>chr19|-|[2]36040080-36040136[0] atgcagcggaccgggggcggggctccgaggcccgggcgcaaccacgggctcccaggcagcctccgccagccggaccccgtcgccctcctgatgctgctcgtggacgctgatcagccggagcccatgcgcagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccgaggcgaaggaggtggaggagaccatcgagggcatgctcctcaggctggaagagttttgcagcctggctgacctgatcaggagtgatacttcacagatcctggaggaaaacatcccagtccttaaggccaaactgacagaaatgcgtggcatctatgccaaagtggaccggctagagGTTCCCACTGAAGGATGGTCCCCGGCTGCAGGCCTGGCTGCAGCACATGGGCTGTGA MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAKEVEETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEVPTEGWSPAAGLAAAHGL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28099 SLC22A17::MYH7 ENSG00000092096.19::ENSG00000092054.13 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 45 TRUE 71 TRUE 30 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23348506:- chr14:23815523-23822121:- chr14:23817715:- MYH7 ENSG00000092054.13 protein_coding - - chr14:23412740-23435660:- chr14:23434249:- chr14:23881949-23904869:- chr14:23903458:- chr14:23348495,chr14:23348497 chr14:23435545,chr14:23435544 NA NA chr14:23817704,chr14:23817706 chr14:23904754,chr14:23904753 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.06Mb];LOCAL_REARRANGEMENT:-:[59826] 5 9 5 5.02 ONLY_REF_SPLICE YES_LDAS 0.1345 GT 1.6729 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-208b chr14:23417987-23418063:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28100 GATD1::CHID1 ENSG00000177225.17::ENSG00000177830.18 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 37 TRUE 63 TRUE 27 GATD1 ENSG00000177225.17 protein_coding - - chr11:767220-777488:- chr11:770314:- chr11:767220-777488:- chr11:770314:- CHID1 ENSG00000177830.18 protein_coding - - chr11:867859-915058:- chr11:870499:- chr11:867859-915058:- chr11:870499:- chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA chr11:767559,chr11:767566 chr11:878294,chr11:878298 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DJ-1_PfpI|75-132|1.6e-06 none ["TCGA_StarF2019","CCLE_StarF2019"] 5 22 5 7.89 ONLY_REF_SPLICE YES_LDAS 0.173 GT 1.7819 AG 1.9086 ENST00000397472.6 1-629 ENST00000436108.6 960-1182 chr11|-|[1]770314-770398[1]|[0]771333-771426[0]|[2]772427-772521[1]|[0]773522-773629[1]|[0]774008-774113[0]|[2]775066-775142[1]|[0]777399-777462[0]<==>chr11|-|[2]869858-869956[0]|[2]870121-870163[2]|[1]870419-870499[2] atggcgtccgagcggctccctaacaggcccgcctgtctgctcgtggccagcggcgccgccgaaggtgtgtcggcccagtccttcctccactgtttcacgatggccagcaccgccttcaacctgcaggtggccacccctggggggaaagccatggaatttgtggatgtgactgagagcaatgcacgctgggtgcaagacttccgcctcaaggcttacgccagccccgccaagctcgagtccatcgatggtgcccggtaccatgccctcctgatccccagctgtcctggggccctgaccgacctggccagcagtggctccctggcccgtatcctgcagcacttccactctgagagcaaacccatctgcgccgtcggccacggtgtcgccgccctgtgctgtgccaccaacgaggacagatcctgggtgttcgacagctacagcctgacagggccctctgtgtgtgagctcgtcagggcccccggcttcgcccgcctgccgctcgtggtggaggacttcgtgaaggattcgggcgcctgcttcagtggagcagcagcctcctgccccaaggccgaccggcactggcagcactttcctgttgaagaaatcttcctggcgtgtggtttcaaagtGTACATCCAGACACTGAAGGACCACAGGCCCCGGATGGTGTGGGACAGCCAGGCCTCAGAGCACTTCTTCGAGTACAAGAAGAGCCGCAGTGGGAGGCACGTCGTCTTCTACCCAACCCTGAAGTCCCTGCAGGTGCGGCTGGAGCTGGCCCGGGAGCTGGGCGTTGGGGTCTCTATCTGGGAGCTGGGCCAGGGCCTGGACTACTTCTACGACCTGCTCTAG MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACFSGAAASCPKADRHWQHFPVEEIFLACGFKVYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28102 SLC25A44::RPS10P7 ENSG00000160785.14::ENSG00000223396.4 MFE280 SRR8615237 SRR8652127 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ RPS10P7 ENSG00000223396.4 transcribed_processed_pseudogene + + chr1:201518703-201584367:+ chr1:201583679:+ chr1:201487831-201553495:+ chr1:201552807:+ chr1:156198497,chr1:156198488,chr1:156198483 chr1:201537805,chr1:201537793,chr1:201537793 NA NA chr1:156168288,chr1:156168279,chr1:156168274 chr1:201506933,chr1:201506921,chr1:201506921 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1208 GT 1.8892 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28104 KPNA2::DHX40 ENSG00000182481.10::ENSG00000108406.10 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 56 FALSE NA FALSE NA KPNA2 ENSG00000182481.10 protein_coding + + chr17:68035636-68047364:+ chr17:68035840:+ chr17:66031752-66043480:+ chr17:66031956:+ DHX40 ENSG00000108406.10 protein_coding + + chr17:59565558-59608345:+ chr17:59602522:+ chr17:57642919-57685706:+ chr17:57679883:+ chr17:68036058,chr17:68036058 chr17:59601485,chr17:59601482 NA NA chr17:66032174,chr17:66032174 chr17:57678846,chr17:57678843 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:8.43Mb] 1074 192 1074 192 ONLY_REF_SPLICE YES_LDAS 18.1563 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28108 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 58 TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75784984:+ chr17:73780887-73821880:+ chr17:73781065:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73227264:- chr17:71203492-71232892:- chr17:71223403:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.55Mb] 54 99 54 94.32 ONLY_REF_SPLICE YES_LDAS 2.1271 GT 1.6895 AG 0.971 ENST00000592629.1 1-104 ENST00000405159.8 222-624 chr17|+|[0]75784881-75784984[1]<==>chr17|-|[2]73209529-73209768[0]|[2]73212678-73212740[0]|[2]73227165-73227264[2] atgtcgaagggccccgggcccggcggctccgcagcttcctcggcgcccccggccgctaccgctcaggtgctgcaggcacagcccgagaaaccgcagcactacacGAAAAGGAGAAGGAATGGCAACGAAGAAGACAACCATCTTCCCCCCCAGACCAAAAGAAGTAGCAGAAACCCTGTCTTTCAGGATTCCTGGGACACAGAGACAGTACCTGTAATGAGAAACAGTAAAGAAAACAGACTAAGAGGAAACAAAGCGTTCTGCGCGTCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAATAGCCCGGACAGGGCCAGCGGGCCGGAAGGCAGCTTGAGCCAGACCATGGCCGGATCCAGCCCTAACACGCCTCAGCCCGTGCCCGAGCAGTCCGCGCTGTGCCAAGGCCTCTACTTCCACATCAACCAGACCCTGAGGGAGGCCCACTTCCACAGCCTACAGCACCGAGGGCGGCCTCTGACATGA MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTKRRRNGNEEDNHLPPQTKRSSRNPVFQDSWDTETVPVMRNSKENRLRGNKAFCASSGSDSGGSSSSSSSSINSPDRASGPEGSLSQTMAGSSPNTPQPVPEQSALCQGLYFHINQTLREAHFHSLQHRGRPLT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28109 EME1::KCNJ2 ENSG00000154920.15::ENSG00000123700.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EME1 ENSG00000154920.15 protein_coding + + chr17:50373220-50381483:+ chr17:50376193:+ chr17:48450581-48458844:+ chr17:48453554:+ KCNJ2 ENSG00000123700.5 protein_coding + + chr17:70168673-70180044:+ chr17:70174824:+ chr17:68164814-68176185:+ chr17:68170965:+ chr17:50378577,chr17:50378572 chr17:70170543,chr17:70170535 NA NA chr17:48455938,chr17:48455933 chr17:68166684,chr17:68166676 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:19.79Mb] 51 63 51 63 ONLY_REF_SPLICE YES_LDAS 1.6349 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28110 NHERF1::TMEM105 ENSG00000109062.12::ENSG00000185332.8 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 98 TRUE 46 NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74762173:+ chr17:72744767-72765492:+ chr17:72758312:+ TMEM105 ENSG00000185332.8 lncRNA - - chr17:81311270-81330674:- chr17:81313919:- chr17:79285070-79304474:- chr17:79287719:- chr17:74763100 chr17:81314140 NA NA chr17:72759239 chr17:79287940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 38 87 38 46.56 ONLY_REF_SPLICE YES_LDAS 1.2127 GT 1.8892 AG 1.3383 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28111 ACACA::ERC1 ENSG00000278540.5::ENSG00000082805.21 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 60 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37330173:- chr17:35441927-35766927:- chr17:35687113:- ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CtsR_C|18-29|0.44^CtsR_C|59-97|8.1e-06 none ["ERC1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr12] 34 23 34 23 ONLY_REF_SPLICE YES_LDAS 0.8175 GT 1.9899 AG 1.6729 ENST00000617548.1 1-338 ENST00000543086.7 2941-3267 chr17|-|[1]37330173-37330425[1]|[0]37339804-37339850[2]|[1]37406262-37406299[0]<==>chr12|+|[0]1444562-1444750[2]|[0]1490093-1490230[2] atgtggtggtctactctgatgtcaatcttgagggctaggtctttttggaagtggatatctactcagacagtaagaattataagagctgtaagagctcattttggaggaataatggatgaaccatctcccttggcccaacctctggagctgaaccagcactctcgattcataataggttctgtgtctgaagataactcagaggatgagatcagcaacctggtgaagttggacctactggaggagaaggagggctccttgtcacctgcttctgttggctcagatacactctctgatttggggatctctagcctacaggatggcttggccttgcacataagATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAGCTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCCTGGAAGAGTCCTCTTGA MWWSTLMSILRARSFWKWISTQTVRIIRAVRAHFGGIMDEPSPLAQPLELNQHSRFIIGSVSEDNSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISSLQDGLALHIRSSSPS*NLTKIEVN*SCTLDT*QPSAMTETP*SSVDSLHQLPITWTMTRRLGRMSCRR*PGGSFRMS*RKVNGTMQNCRSLPTPFFSR*QTIVPTS*SKWSTPWKSPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 28114 NSF::PLEKHM1 ENSG00000073969.19::ENSG00000225190.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 63 FALSE NA FALSE NA NSF ENSG00000073969.19 protein_coding + + chr17:46590669-46757679:+ chr17:46704854:+ chr17:44668035-44835045:+ chr17:44782220:+ PLEKHM1 ENSG00000225190.12 protein_coding - - chr17:45435900-45490758:- chr17:45458439:- chr17:43513266-43568124:- chr17:43535805:- chr17:46709127,chr17:46709123 chr17:45468243,chr17:45468247 NA NA chr17:44786493,chr17:44786489 chr17:43545609,chr17:43545613 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CDC48_N|6-84|8.7e-16^Parvo_NS1|12-38|0.89^bpMoxR|22-34|8.9^AAA_7|33-52|4.5^ABC_tran|86-127|9.9^Parvo_NS1|88-143|1.3^nSTAND3|95-128|0.85^KTI12|101-124|9^CDC48_2|111-159|5.3e-12^AAA_25|150-168|5.4^RuvB_N|153-169|9.9^AAA_5|158-170|4.9^nSTAND3|159-169|2.4^ATPase|218-272|8e-05^CDC48_2|223-240|0.23^bpMoxR|244-281|0.00052^AAA_7|248-280|0.00015^TsaE|251-294|2.8e-05^RuvB_N|253-290|9.4e-06^AAA_16|254-296|2.6e-06^TIP49|254-300|8.2e-05^NB-ARC|254-275|0.00023^AAA_19|254-281|0.00063^AAA_2|255-360|1.3e-06^nSTAND3|255-295|8.7e-05^AAA|256-396|7.8e-41^AAA_22|256-307|1.5e-06^AAA_5|256-289|3.3e-07^AAA_14|256-333|2.9e-06^RNA_helicase|256-284|6.3e-06^Mg_chelatase|256-280|3.8e-06^AAA_18|256-293|6.1e-06^ATPase_2|256-279|6.8e-05^ABC_tran|256-332|2.2e-05^NACHT|256-279|0.00024^Parvo_NS1|256-276|0.0007^AAA_33|256-311|4e-05^AAA_25|256-272|0.001^AAA_28|256-303|3.2e-05^AAA_24|256-277|5.9e-05^Rad17|256-289|0.00035^KTI12|256-285|0.0021^AAA_17|259-313|0.00038^ATPase|298-334|8.6^ATPase_2|299-337|0.62^AAA_25|307-336|0.8^Rad17|341-367|3.4^nSTAND3|352-385|7.3^AAA_25|393-431|0.93^AAA_lid_3|423-463|3.9e-14^KTI12|428-466|0.96^Parvo_NS1|454-489|0.95^CDC48_N|462-482|0.78 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.10Mb] 18 13 18 9.75 ONLY_REF_SPLICE YES_LDAS 0.3979 GT 1.6729 AG 1.6402 ENST00000706397.1 1-1470 ENST00000430334.8 1309-3171 chr17|+|[0]46590776-46590787[2]|[0]46624244-46624329[1]|[2]46626613-46626712[2]|[0]46630411-46630450[0]|[1]46637376-46637542[2]|[0]46640054-46640161[2]|[0]46640643-46640718[0]|[1]46643104-46643259[0]|[1]46674414-46674613[2]|[0]46692903-46693068[0]|[1]46693847-46693921[0]|[1]46694475-46694662[2]|[0]46704759-46704854[2]<==>chr17|-|[2]45437858-45437969[2]|[1]45439477-45439634[0]|[2]45440163-45440226[2]|[1]45445470-45445663[0]|[2]45450618-45450763[1]|[0]45453355-45454272[1]|[0]45458169-45458439[0] atggcgggccggagcatgcaagcggcaagatgtcctacagatgaattatctttaaccaattgtgcagttgtgaatgaaaaggatttccagtctggccagcatgtgattgtgaggacctctcccaatcacaggtacacatttacactgaagacacatccatcggtggttccagggagcattgcattcagtttacctcagagaaaatgggctgggctttctattgggcaagaaatagaagtctccttatatacatttgacaaagccaaacagtgtattggcacaatgaccatcgagattgatttcctgcagaaaaaaagcattgactccaacccttatgacaccgacaagatggcagcagaatttattcagcaattcaacaaccaggccttctcagtgggacaacagcttgtctttagcttcaatgaaaagctttttggcttactggtgaaggacattgaagccatggatcctagcatcctgaagggagagcctgcgacagggaaaaggcagaagattgaagtaggactggttgttggaaacagtcaagttgcatttgaaaaagcagaaaattcgtcacttaatcttattggcaaagctaaaaccaaggaaaatcgccaatcaattatcaatcctgactggaactttgaaaaaatgggaataggaggtctagacaaggaattttcagatattttccgacgagcatttgcttcccgagtatttcctccagagattgtggagcagatgggttgtaaacatgttaaaggcatcctgttatatggacccccaggttgtggtaagactctcttggctcgacagattggcaagatgttgaatgcaagagagcccaaagtggtcaatgggccagaaatccttaacaaatatgtgggagaatcagaggctaacattcgcaaactttttgctgatgctgaagaggagcaaaggaggcttggtgctaacagtggtttgcacatcatcatctttgatgaaattgatgccatctgcaagcagagagggagcatggctggtagcacgggagttcatgacactgttgtcaaccagttgctgtccaaaattgatggcgtggagcagctaaacaacatcctagtcattggaatgaccaatagaccagatctgatagatgaggctcttcttagacctggaagactggaagttaaaatggagataggcttgccagatgagaaaggccgactacagattcttcacatccacacagcaagaatgagagggcatcagttactctctgctgatgtagacattaaagaactggccgtggagaccaagaatttcagtggtgctgaattggagggtctggtgcgagcagcccagtccactgctatgaatagacacataaaggccagtactaaagtggaagtggacatggagaaagcagaaagcctgcaagtgacgagaggagacttccttgcttctttggagaatgatatcaaaccaAAAAACAAGAGCTGGATCTCAGAGGATGACTTCTACCGGCCTTCCCGGGAGCAACCCCTGGAGAGTGCTTCAGACCACCCAATAGCTTCTTACAGGGGGACTCCAGGGTCAAGGCCTGGTCTCCACAGGCATTTTTCTCAAGAACCAAGAAAAAACTGCTCCCTGGGGGCGTTAGACCAAGCGTGTGTACCTTCCCCAGGAAGAAGGCAAGCCCAGGCAGCCCCATCCCAGGGGCATAAGAGCTTCCGGGTGGTACACCGGAGACAGATGGGACTGTCCAACCCATTCCGGGGTCTCATGAAGCTGGGCACCGTGGAGCGGCGGGGGGCAATGGGCATCTGGAAGGAGCTCTTCTGCGAGCTCTCCCCGCTGGAGTTCCGCCTCTACCTGAGCAACGAGGAGCACACCTGTGTGGAGAACTGCTCGCTGCTTCGCTGTGAGTCTGTGGGGCCAGCCCATAGTGATGGGCGCTTTGAGCTGGTCTTCTCTGGCAAGAAGCTGGCCCTGCGCGCCTCCTCCCAGGACGAAGCTGAGGACTGGCTGGACCGGGTGCGGGAGGCCCTGCAGAAGGTCCGGCCTCAGCAGGAGGATGAGTGGGTGAACGTGCAGTACCCAGACCAGCCTGAGGAACCCCCCGAGGCGCCCCAGGGCTGCCTCTCTCCCTCAGACCTGCTCTCGGAGCCCGCGGCCCTCCAGGGCACACAGTTTGACTGGTCGTCCGCCCAGGTTCCAGAGCCAGATGCCATCAAGGAGTCCCTGCTGTACTTGTACATGGACAGGACCTGGATGCCCTATATATTTTCTCTGTCCTTGGAGGCTCTGAAATGTTTCCGCATCAGGAACAATGAGAAGATGCTGAGTGACAGCCACGGCGTGGAGACCATCCGGGACATCCTGCCAGACACCAGCCTTGGGGGCCCATCCTTCTTCAAAATCATCACGGCCAAGGCTGTCCTGAAGCTGCAGGCCGGAAACGCCGAGGAAGCCGCCCTGTGGAGGGATCTGGTCCGCAAAGTCCTGGCATCCTACTTGGAGACAGCCGAGGAGGCGGTGACCCTGGGCGGGAGCCTGGATGAAAACTGTCAGGAGGTGCTGAAATTTGCCACCCGGGAGAATGGCTTCCTGCTGCAGTACCTGGTGGCTATCCCCATGGAGAAAGGCCTTGACTCCCAAGGCTGCTTCTGCGCAGGCTGCTCCCGGCAGATCGGCTTCTCCTTTGTACGACCCAAGCTCTGTGCCTTCTCTGGCCTCTATTACTGTGACATCTGCCACCAAGACGATGCCTCAGTGATTCCGGCCAGGATCATCCACAACTGGGACCTCACCAAGCGCCCGATCTGCAGGCAGGCCCTGAAGTTTCTGACACAGATCCGGGCCCAGCCCCTCATCAACCTGCAGATGGTGAACGCGTCTCTGTACGAGCATGTGGAGCGGATGCACCTCATTGGGAGGAGACGGGAGCAGCTGAAGCTCCTGGGGGATTACCTGGGCCTGTGCCGGAGTGGCGCCCTGAAGGAGCTCAGCAAGAGGCTCAACCACAGGAATTATCTCTTGGAATCTCCGCATAGGTTCAGTGTTGCTGACCTCCAACAGATCGCAGACGGGGTGTATGAAGGATTCCTCAAGGCCCTGATTGAATTTGCCTCCCAGCATGTCTACCACTGCGACCTGTGCACCCAGCGCGGCTTCATCTGCCAGATCTGCCAGCACCACGACATCATCTTCCCCTTTGAGTTTGACACCACAGTCAGGTGTGCCGAGTGCAAGACCGTCTTCCACCAGAGCTGCCAGGCTGTGGTGAAGAAGGGCTGCCCCCGCTGTGCCCGCCGGCGCAAGTACCAGGAACAGAACATTTTCGCCTGA MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLKTHPSVVPGSIAFSLPQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKSIDSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDIKPKNKSWISEDDFYRPSREQPLESASDHPIASYRGTPGSRPGLHRHFSQEPRKNCSLGALDQACVPSPGRRQAQAAPSQGHKSFRVVHRRQMGLSNPFRGLMKLGTVERRGAMGIWKELFCELSPLEFRLYLSNEEHTCVENCSLLRCESVGPAHSDGRFELVFSGKKLALRASSQDEAEDWLDRVREALQKVRPQQEDEWVNVQYPDQPEEPPEAPQGCLSPSDLLSEPAALQGTQFDWSSAQVPEPDAIKESLLYLYMDRTWMPYIFSLSLEALKCFRIRNNEKMLSDSHGVETIRDILPDTSLGGPSFFKIITAKAVLKLQAGNAEEAALWRDLVRKVLASYLETAEEAVTLGGSLDENCQEVLKFATRENGFLLQYLVAIPMEKGLDSQGCFCAGCSRQIGFSFVRPKLCAFSGLYYCDICHQDDASVIPARIIHNWDLTKRPICRQALKFLTQIRAQPLINLQMVNASLYEHVERMHLIGRRREQLKLLGDYLGLCRSGALKELSKRLNHRNYLLESPHRFSVADLQQIADGVYEGFLKALIEFASQHVYHCDLCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRRKYQEQNIFA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28115 ARHGDIA::EME1 ENSG00000141522.12::ENSG00000154920.15 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 64 FALSE NA FALSE NA ARHGDIA ENSG00000141522.12 protein_coding - - chr17:81867721-81871378:- chr17:81871298:- chr17:79825597-79829254:- chr17:79829174:- EME1 ENSG00000154920.15 protein_coding + + chr17:50373220-50381483:+ chr17:50375185:+ chr17:48450581-48458844:+ chr17:48452546:+ chr17:81870642,chr17:81870642,chr17:81870648,chr17:81870648 chr17:50373127,chr17:50373131,chr17:50373121,chr17:50373122 NA NA chr17:79828518,chr17:79828518,chr17:79828524,chr17:79828524 chr17:48450488,chr17:48450492,chr17:48450482,chr17:48450483 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:31.49Mb] 17 0 17 0 ONLY_REF_SPLICE YES_LDAS 0.2438 GT 1.6402 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28117 KIAA1522::LRRN2 ENSG00000162522.11::ENSG00000170382.12 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA1522 ENSG00000162522.11 protein_coding + + chr1:32741830-32774970:+ chr1:32742189:+ chr1:33207431-33240571:+ chr1:33207790:+ LRRN2 ENSG00000170382.12 protein_coding - - chr1:204617170-204685738:- chr1:204620218:- chr1:204586298-204654866:- chr1:204589346:- chr1:32759640 chr1:204620633 NA NA chr1:33225241 chr1:204589761 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:171.84Mb] 15 5 15 5 ONLY_REF_SPLICE YES_LDAS 0.2868 GT 1.5058 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28118 NHERF1::TMEM105 ENSG00000109062.12::ENSG00000185332.8 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 98 TRUE 46 NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74762173:+ chr17:72744767-72765492:+ chr17:72758312:+ TMEM105 ENSG00000185332.8 lncRNA - - chr17:81311270-81330674:- chr17:81313985:- chr17:79285070-79304474:- chr17:79287785:- chr17:74763100 chr17:81314140 NA NA chr17:72759239 chr17:79287940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 15 91 15 22.98 ONLY_REF_SPLICE YES_LDAS 0.5447 GT 1.8892 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28123 UNK::FAM104A ENSG00000132478.10::ENSG00000133193.13 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 97 TRUE 45 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75784984:+ chr17:73780887-73821880:+ chr17:73781065:+ FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73209768:- chr17:71203492-71232892:- chr17:71205907:- chr17:75799354 chr17:73229554 NA NA chr17:73795435 chr17:71225693 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.55Mb] 10 52 10 4.68 ONLY_REF_SPLICE YES_LDAS 0.2105 GT 1.6895 AG 1.9899 ENST00000592629.1 1-104 ENST00000581110.1 222-312 chr17|+|[0]75784881-75784984[1]<==>chr17|-|[2]73209678-73209768[2] atgtcgaagggccccgggcccggcggctccgcagcttcctcggcgcccccggccgctaccgctcaggtgctgcaggcacagcccgagaaaccgcagcactacacTCTTCAGGCAGTGACAGTGGTGGGAGCAGCAGCAGCAGCAGCAGCAGCATCAATAGCCCGGACAGGGCCAGCGGGCCGGAAGGCAGCTTGA MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTLQAVTVVGAAAAAAAASIARTGPAGRKAA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28127 ADAMTS9::TSEN2 ENSG00000163638.13::ENSG00000154743.19 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 62 FALSE NA FALSE NA ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64594258:- chr3:64501330-64673676:- chr3:64579934:- TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12539161:+ chr3:12525920-12583048:+ chr3:12580660:+ chr3:64570494,chr3:64570499 chr3:12537502,chr3:12537497 NA NA chr3:64556170,chr3:64556175 chr3:12579001,chr3:12578996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pep_M12B_propep|49-157|7.7e-25^Reprolysin_4|77-99|6.3^ADAMTS_spacer1|178-215|5.8^Reprolysin|293-499|2e-30^Reprolysin_5|293-467|4.2e-19^Reprolysin_2|314-486|2.2e-11^Reprolysin_3|315-445|1.2e-13^Reprolysin_4|382-453|2.4e-05^TSP1_CCN|474-480|1.2^TSP1_spondin|475-480|9.7^ADAMTS_CR_2|511-578|1.7e-21^TSP1_ADAMTS|526-560|9.3^TSP1_CCN|553-563|9.1^TSP1_spondin|592-642|5.1e-09^TSP_1|593-642|4.8e-10^TSP1_CCN|594-615|0.014^TSP1_ADAMTS|595-642|8.9e-06^ADAMTS_CR_3|648-752|8.8e-13^ADAMTS_CR_2|683-724|9.4e-06^TSP_1|700-724|5.5^ADAMTS_spacer1|754-871|1.4e-30^TSP1_ADAMTS|884-931|3.6e-07^TSP1_spondin|884-901|0.043^TSP_1|885-915|0.0073^TSP1_CCN|885-894|0.45^TSP1_ADAMTS|939-993|8.8e-09^TSP_1|945-963|0.048^TSP1_spondin|945-957|0.063^TSP1_CCN|945-955|0.0078^TSP1_CCN|991-999|4.6^TSP1_ADAMTS|1001-1053|8.8e-13^TSP1_spondin|1002-1053|4.2e-06^TSP1_CCN|1003-1022|0.0049^TSP_1|1004-1053|5.2e-06^TSP1_CCN|1053-1080|0.00028^TSP1_ADAMTS|1056-1108|5.9e-14^TSP_1|1059-1108|5.6e-07^TSP1_spondin|1059-1108|0.00082^TSP1_CCN|1108-1132|0.00039^TSP1_ADAMTS|1111-1165|3.1e-20^TSP_1|1114-1165|3.1e-08^TSP1_spondin|1114-1165|1.8e-05^TSP1_ADAMTS|1186-1239|3.1e-15^TSP_1|1188-1223|1.8e-08^TSP1_spondin|1188-1239|9.9e-06^TSP1_CCN|1188-1211|2.2e-06^TSP1_CCN|1241-1263|2.9e-05^TSP1_ADAMTS|1242-1295|2.1e-15^TSP_1|1246-1295|7.2e-09^TSP1_spondin|1246-1295|7e-06^TSP1_ADAMTS|1332-1383|2e-14^TSP_1|1334-1383|4e-07^TSP1_CCN|1334-1383|0.019^TSP1_spondin|1335-1383|0.0001^TSP1_CCN|1383-1410|0.00029^TSP1_ADAMTS|1386-1439|5.8e-18^TSP1_spondin|1388-1439|2.7e-05^TSP_1|1389-1418|2.3e-06^TSP1_ADAMTS|1445-1498|5.1e-15^TSP_1|1447-1477|2.8e-08^TSP1_CCN|1447-1465|9.4e-05^TSP1_spondin|1448-1498|9.8e-05^TSP1_CCN|1498-1521|6.7e-06^TSP1_ADAMTS|1501-1554|5.4e-15^TSP_1|1504-1525|2.8e-07^TSP1_spondin|1504-1554|2.8e-05^TSP1_ADAMTS|1559-1612|5.1e-16^TSP1_CCN|1561-1580|0.0055^TSP_1|1562-1612|2.8e-07^TSP1_spondin|1562-1612|6.9e-06^ADAMTS_CR_2|1566-1598|3.4^TSP1_ADAMTS|1616-1675|2.3e-13^TSP_1|1618-1642|1.2e-09^TSP1_CCN|1618-1637|1.5e-05^TSP1_spondin|1619-1635|0.00023^TSP1_ADAMTS|1681-1729|1.7e-13^TSP_1|1684-1730|8.5e-07^TSP1_spondin|1684-1729|1.4e-05^TSP1_CCN|1684-1706|2.2e-05^ADAMTS_CR_2|1699-1741|1.8^GON|1736-1934|2.6e-92^TSP1_spondin|1792-1814|5.5^TSP1_ADAMTS|1920-1934|8.7^TSP1_CCN|1921-1934|3.4 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:51.98Mb] 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.2008 GT 1.7819 AG 1.5219 ENST00000498707.5 1-4356 ENST00000680857.1 1339-1551 chr3|-|[2]64594258-64594434[0]|[2]64596830-64596991[0]|[2]64601944-64602213[0]|[2]64603922-64604089[0]|[2]64604227-64604331[0]|[2]64606960-64607079[0]|[2]64613345-64613509[0]|[2]64615321-64615485[0]|[2]64615960-64616170[2]|[1]64621114-64621240[1]|[0]64622198-64622327[0]|[2]64622420-64622586[1]|[0]64631455-64631550[1]|[0]64631808-64631925[0]|[2]64633472-64633608[1]|[0]64633698-64633879[2]|[1]64641848-64641993[0]|[2]64647940-64648044[0]|[2]64649637-64649778[2]|[1]64651017-64651163[2]|[1]64654353-64654458[1]|[0]64654572-64654612[2]|[1]64655576-64655691[0]|[2]64655792-64655875[0]|[2]64658502-64658791[1]|[0]64681201-64681363[0]|[2]64686568-64686968[1]|[0]64687543-64687657[0]<==>chr3|+|[0]12539161-12539373[2] atgcagtttgtatcctgggccacactgctaacgctcctggtgcgggacctggccgagatggggagcccagacgccgcggcggccgtgcgcaaggacaggctgcacccgaggcaagtgaaattattagagaccctgagcgaatacgaaatcgtgtctcccatccgagtgaacgctctcggagaaccctttcccacgaacgtccacttcaaaagaacgcgacggagcattaactctgccactgacccctggcctgccttcgcctcctcctcttcctcctctacctcctcccaggcgcattaccgcctctctgccttcggccagcagtttctatttaatctcaccgccaatgccggatttatcgctccactgttcactgtcaccctcctcgggacgcccggggtgaatcagaccaagttttattccgaagaggaagcggaactcaagcactgtttctacaaaggctatgtcaataccaactccgagcacacggccgtcatcagcctctgctcaggaatgctgggcacattccggtctcatgatggggattattttattgaaccactacagtctatggatgaacaagaagatgaagaggaacaaaacaaaccccacatcatttataggcgcagcgccccccagagagagccctcaacaggaaggcatgcatgtgacacctcagaacacaaaaataggcacagtaaagacaagaagaaaaccagagcaagaaaatggggagaaaggattaacctggctggtgacgtagcagcattaaacagcggcttagcaacagaggcattttctgcttatggtaataagacggacaacacaagagaaaagaggacccacagaaggacaaaacgttttttatcctatccacggtttgtagaagtcttggtggtggcagacaacagaatggtttcataccatggagaaaaccttcaacactatattttaactttaatgtcaattgtagcctctatctataaagacccaagtattggaaatttaattaatattgttattgtgaacttaattgtgattcataatgaacaggatgggccttccatatcttttaatgctcagacaacattaaaaaacttttgccagtggcagcattcgaagaacagtccaggtggaatccatcatgatactgctgttctcttaacaagacaggatatctgcagagctcacgacaaatgtgataccttaggcctggctgaactgggaaccatttgtgatccctatagaagctgttctattagtgaagatagtggattgagtacagcttttacgatcgcccatgagctgggccatgtgtttaacatgcctcatgatgacaacaacaaatgtaaagaagaaggagttaagagtccccagcatgtcatggctccaacactgaacttctacaccaacccctggatgtggtcaaagtgtagtcgaaaatatatcactgagtttttagacactggttatggcgagtgtttgcttaacgaacctgaatccagaccctaccctttgcctgtccaactgccaggcatcctttacaacgtgaataaacaatgtgaattgatttttggaccaggttctcaggtgtgcccatatatgatgcagtgcagacggctctggtgcaataacgtcaatggagtacacaaaggctgccggactcagcacacaccctgggccgatgggacggagtgcgagcctggaaagcactgcaagtatggattttgtgttcccaaagaaatggatgtccccgtgacagatggatcctggggaagttggagtccctttggaacctgctccagaacatgtggagggggcatcaaaacagccattcgagagtgcaacagaccagaaccaaaaaatggtggaaaatactgtgtaggacgtagaatgaaatttaagtcctgcaacacggagccatgtctcaagcagaagcgagacttccgagatgaacagtgtgctcactttgacgggaagcattttaacatcaacggtctgcttcccaatgtgcgctgggtccctaaatacagtggaattctgatgaaggaccggtgcaagttgttctgcagagtggcagggaacacagcctactatcagcttcgagacagagtgatagatggaactccttgtggccaggacacaaatgatatctgtgtccagggcctttgccggcaagctggatgcgatcatgttttaaactcaaaagcccggagagataaatgtggggtttgtggtggcgataattcttcatgcaaaacagtggcaggaacatttaatacagtacattatggttacaatactgtggtccgaattccagctggtgctaccaatattgatgtgcggcagcacagtttctcaggggaaacagacgatgacaactacttagctttatcaagcagtaaaggtgaattcttgctaaatggaaactttgttgtcacaatggccaaaagggaaattcgcattgggaatgctgtggtagagtacagtgggtccgagactgccgtagaaagaattaactcaacagatcgcattgagcaagaacttttgcttcaggttttgtcggtgggaaagttgtacaaccccgatgtacgctattctttcaatattccaattgaagataaacctcagcagttttactggaacagtcatgggccatggcaagcatgcagtaaaccctgccaaggggaacggaaacgaaaacttgtttgcaccagggaatctgatcagcttactgtttctgatcaaagatgcgatcggctgccccagcctggacacattactgaaccctgtggtacagactgtgacctgaggtggcatgttgccagcaggagtgaatgtagtgcccagtgtggcttgggttaccgcacattggacatctactgtgccaaatatagcaggctggatgggaagactgagaaggttgatgatggtttttgcagcagccatcccaaaccaagcaaccgtgaaaaatgctcaggggaatgtaacacgggtggctggcgctattctgcctggactgaatgttcaaaaagctgtgacggtgggacccagaggagaagggctatttgtgtcaatacccgaaatgatgtactggatgacagcaaatgcacacatcaagagaaagttaccattcagaggtgcagtgagttcccttgtccacagtggaaatctggagactggtcagagtgcttggtcacctgtggaaaagggcataagcaccgccaggtctggtgtcagtttggtgaagatcgattaaatgatagaatgtgtgaccctgagaccaagccaacatctatgcagacttgtcagcagccggaatgtgcatcctggcaggcgggtccctggggacagtgcagtgtcacttgtggacagggataccagctaagagcagtgaaatgcatcattgggacttatatgtcagtggtagatgacaatgactgtaatgcagcaactagaccaactgatacccaggactgtgaattaccatcatgtcatcctcccccagctgccccggaaacgaggagaagcacatacagtgcaccaagaacccagtggcgatttgggtcttggaccccatgctcagccacttgtgggaaaggtacccggatgagatacgtcagctgccgagatgagaatggctctgtggctgacgagagtgcctgtgctaccctgcctagaccagtggcaaaggaagaatgttctgtgacaccctgtgggcaatggaaggccttggactggagctcttgctctgtgacctgtgggcaaggtagggcaacccggcaagtgatgtgtgtcaactacagtgaccacgtgatcgatcggagtgagtgtgaccaggattatatcccagaaactgaccaggactgttccatgtcaccatgccctcaaaggaccccagacagtggcttagctcagcaccccttccaaaatgaggactatcgtccccggagcgccagccccagccgcacccatgtgctcggtggaaaccagtggagaactggcccctggggagcatgttccagtacctgtgctggcggatcccagcggcgtgttgttgtatgtcaggatgaaaatggatacaccgcaaacgactgtgtggagagaataaaacctgatgagcaaagagcctgtgaatccggcccttgtcctcagtgggcttatggcaactggggagagtgcactaagctgtgtggtggaggcataagaacaagactggtggtctgtcagcggtccaacggtgaacggtttccagatttgagctgtgaaattcttgataaacctcccgatcgtgagcagtgtaacacacatgcttgtccacacgacgctgcatggagtactggcccttggagctcgTCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGA MQFVSWATLLTLLVRDLAEMGSPDAAAAVRKDRLHPRQVKLLETLSEYEIVSPIRVNALGEPFPTNVHFKRTRRSINSATDPWPAFASSSSSSTSSQAHYRLSAFGQQFLFNLTANAGFIAPLFTVTLLGTPGVNQTKFYSEEEAELKHCFYKGYVNTNSEHTAVISLCSGMLGTFRSHDGDYFIEPLQSMDEQEDEEEQNKPHIIYRRSAPQREPSTGRHACDTSEHKNRHSKDKKKTRARKWGERINLAGDVAALNSGLATEAFSAYGNKTDNTREKRTHRRTKRFLSYPRFVEVLVVADNRMVSYHGENLQHYILTLMSIVASIYKDPSIGNLINIVIVNLIVIHNEQDGPSISFNAQTTLKNFCQWQHSKNSPGGIHHDTAVLLTRQDICRAHDKCDTLGLAELGTICDPYRSCSISEDSGLSTAFTIAHELGHVFNMPHDDNNKCKEEGVKSPQHVMAPTLNFYTNPWMWSKCSRKYITEFLDTGYGECLLNEPESRPYPLPVQLPGILYNVNKQCELIFGPGSQVCPYMMQCRRLWCNNVNGVHKGCRTQHTPWADGTECEPGKHCKYGFCVPKEMDVPVTDGSWGSWSPFGTCSRTCGGGIKTAIRECNRPEPKNGGKYCVGRRMKFKSCNTEPCLKQKRDFRDEQCAHFDGKHFNINGLLPNVRWVPKYSGILMKDRCKLFCRVAGNTAYYQLRDRVIDGTPCGQDTNDICVQGLCRQAGCDHVLNSKARRDKCGVCGGDNSSCKTVAGTFNTVHYGYNTVVRIPAGATNIDVRQHSFSGETDDDNYLALSSSKGEFLLNGNFVVTMAKREIRIGNAVVEYSGSETAVERINSTDRIEQELLLQVLSVGKLYNPDVRYSFNIPIEDKPQQFYWNSHGPWQACSKPCQGERKRKLVCTRESDQLTVSDQRCDRLPQPGHITEPCGTDCDLRWHVASRSECSAQCGLGYRTLDIYCAKYSRLDGKTEKVDDGFCSSHPKPSNREKCSGECNTGGWRYSAWTECSKSCDGGTQRRRAICVNTRNDVLDDSKCTHQEKVTIQRCSEFPCPQWKSGDWSECLVTCGKGHKHRQVWCQFGEDRLNDRMCDPETKPTSMQTCQQPECASWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSCRDENGSVADESACATLPRPVAKEECSVTPCGQWKALDWSSCSVTCGQGRATRQVMCVNYSDHVIDRSECDQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYTANDCVERIKPDEQRACESGPCPQWAYGNWGECTKLCGGGIRTRLVVCQRSNGERFPDLSCEILDKPPDREQCNTHACPHDAAWSTGPWSSSRSVVQAGVQCCDLGSLQPLPAGFKRFSCLSLLSSWDYRHAPPHTANFCIFSRDGVSLCWPGWSGTPDLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28128 ENDOV::SEPTIN9 ENSG00000173818.17::ENSG00000184640.20 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENDOV ENSG00000173818.17 protein_coding + + chr17:80415165-80438086:+ chr17:80429831:+ chr17:78388965-78411886:+ chr17:78403631:+ SEPTIN9 ENSG00000184640.20 protein_coding + + chr17:77280569-77500596:+ chr17:77307141:+ chr17:75276651-75496678:+ chr17:75303223:+ chr17:80435260,chr17:80435470,chr17:80435250 chr17:77301235,chr17:77301482,chr17:77301222 NA NA chr17:78409060,chr17:78409270,chr17:78409050 chr17:75297317,chr17:75297564,chr17:75297304 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Endonuclease_5|43-240|1.2e-64^UvrC_RNaseH_dom|48-161|7.1e-05^MotA_ExbB|155-196|2.9e-05^DUF99|203-245|6.2e-05^TMIE|219-239|2e-05 AAA_22|31-58|8.2^FtsK_SpoIIIE|268-325|1.1e-05^G-alpha|282-397|8.6e-05^NB-ARC|285-347|4.4e-05^VapE-like_dom|290-332|0.00012^Arf|290-347|0.00032^RsgA_GTPase|294-366|1.8e-08^Septin|295-571|1.5e-114^AAA_16|296-321|2.2e-05^IIGP|297-318|6.1e-05^AAA_7|299-329|0.00017^AIG1|300-372|1.6e-07^GTP_EFTU|300-372|2.9e-06^AAA_29|300-316|8.6e-05^PduV-EutP|300-330|0.00052^AAA_24|300-321|0.00029^MMR_HSR1|301-433|4e-11^Dynamin_N|301-333|7.7e-06^Roc|301-365|9.5e-07^Ras|301-365|2.3e-06^AAA_22|301-331|2.5e-05^ABC_tran|302-323|5.1e-05^Dynamin_N|355-386|0.016^PduV-EutP|355-379|0.71^AAA_24|427-460|3^RsgA_GTPase|435-479|1.3^GTP_EFTU|435-473|0.12^IIGP|447-483|3.4^ABC_tran|516-575|7^AAA_24|518-548|9.1 none 6 6 6 6 ONLY_REF_SPLICE YES_LDAS 0.172 GT 1.9086 AG 1.7819 ENST00000518137.6 1-838 ENST00000427177.6 20-1761 chr17|+|[0]80415195-80415250[1]|[2]80415650-80415821[2]|[0]80421828-80421962[2]|[0]80422206-80422245[0]|[1]80423520-80423632[2]|[0]80425032-80425100[2]|[0]80425492-80425620[2]|[0]80428596-80428660[1]|[2]80429773-80429831[0]<==>chr17|+|[1]77307141-77307197[0]|[1]77402059-77402703[0]|[1]77482144-77482335[0]|[1]77487424-77487552[0]|[1]77488240-77488321[1]|[2]77488727-77488864[1]|[2]77490742-77490859[2]|[0]77492621-77492716[2]|[0]77492980-77493076[0]|[1]77497315-77497366[1]|[2]77498523-77498658[2] atggccctggaggcggcgggagggccgccggaggaaacgctgtcactgtggaaacgggagcaagctcggctgaaggcccacgtcgtagaccgggacaccgaggcgtggcagcgagaccccgccttctcgggtctgcagagggtcgggggcgttgacgtgtccttcgtgaaaggggacagtgtccgcgcttgtgcttccctggtggtgctcagcttccctgagctcgaggtggtgtatgaggagagccgcatggtcagcctcacagccccctacgtgtcgggcttcctggccttccgagaggtgcccttcttgctggagctggtgcagcagctgcgggagaaggagccgggcctcatgccccaggtccttcttgtggatggaaacggggtactccaccaccgaggctttggggtggcctgccaccttggcgtccttacagacctgccgtgtgttggggtggccaagaaacttctgcaggtggatgggctggagaacaacgccctgcacaaggagaagatccgactcctgcagactcgaggagactcattccctctgctgggagactctgggactgtcctgggaatggccctgaggagccacgaccgcagcaccaggcccctctacatctccgtgggccacaggatgagcctggaggccgctgtgcgcctgacttgctgctgctgcaggttccggatcccagagcccgtgcgccaggctgacatctgctcccgagagcacatccgcaagtcgctgggactccccgggccacccacaccgaggagcccgaaggcgcagaggccagtggcatgccccaaaggagactccggagagtcctcagGAGGCACGCGGACCTCCAGTGGCCGGCTCCGGAGGCTTGGTGACTCCAGTGGCCCAGCCTTGAAAAGATCTTTTGAGGTCGAGGAGGTCGAGACACCCAACTCCACCCCACCCCGGAGGGTCCAGACTCCCCTACTCCGAGCCACTGTGGCCAGCTCCACCCAGAAATTCCAGGACCTGGGCGTGAAGAACTCAGAACCCTCGGCCCGCCATGTGGACTCCCTAAGCCAACGCTCCCCCAAGGCGTCCCTGCGGAGGGTGGAGCTCTCGGGCCCCAAGGCGGCCGAGCCGGTGTCCCGGCGCACTGAGCTGTCCATTGACATCTCGTCCAAGCAGGTGGAGAACGCCGGGGCCATCGGCCCGTCCCGGTTCGGGCTCAAGAGGGCCGAGGTGTTGGGCCACAAGACGCCAGAACCGGCCCCTCGGAGGACGGAGATCACCATCGTCAAACCCCAGGAGTCAGCCCACCGGAGGATGGAGCCCCCTGCCTCCAAGGTCCCCGAGGTGCCCACTGCCCCTGCCACCGACGCAGCCCCCAAGAGGGTGGAGATCCAGATGCCCAAGCCTGCTGAGGCGCCCACCGCCCCCAGCCCAGCCCAGACCTTGGAGAATTCAGAGCCTGCCCCTGTGTCTCAGCTGCAGAGCAGGCTGGAGCCCAAGCCCCAGCCCCCTGTGGCTGAGGCTACACCCCGGAGCCAGGAGGCCACTGAGGCGGCTCCCAGCTGCGTTGGCGACATGGCCGACACCCCCAGAGATGCCGGGCTCAAGCAGGCGCCTGCATCACGGAACGAGAAGGCCCCGGTGGACTTCGGCTACGTGGGGATTGACTCCATCCTGGAGCAGATGCGCCGGAAGGCCATGAAGCAGGGCTTCGAGTTCAACATCATGGTGGTCGGGCAGAGCGGCTTGGGTAAATCCACCTTAATCAACACCCTCTTCAAATCCAAAATCAGCCGGAAGTCGGTGCAGCCCACCTCAGAGGAGCGCATCCCCAAGACCATCGAGATCAAGTCCATCACGCACGATATTGAGGAGAAAGGCGTCCGGATGAAGCTGACAGTGATTGACACACCAGGGTTCGGGGACCACATCAACAACGAGAACTGCTGGCAGCCCATCATGAAGTTCATCAATGACCAGTACGAGAAATACCTGCAGGAGGAGGTCAACATCAACCGCAAGAAGCGCATCCCGGACACCCGCGTCCACTGCTGCCTCTACTTCATCCCCGCCACCGGCCACTCCCTCAGGCCCCTGGACATCGAGTTTATGAAACGCCTGAGCAAGGTGGTCAACATCGTCCCTGTCATCGCCAAGGCGGACACACTCACCCTGGAGGAGAGGGTCCACTTCAAACAGCGGATCACCGCAGACCTGCTGTCCAACGGCATCGACGTGTACCCCCAGAAGGAATTTGATGAGGACTCGGAGGACCGGCTGGTGAACGAGAAGTTCCGGGAGATGATCCCATTTGCTGTGGTGGGCAGTGACCACGAGTACCAGGTCAACGGCAAGAGGATCCTTGGGAGGAAGACCAAGTGGGGTACCATCGAAGTTGAAAACACCACACACTGTGAGTTTGCCTACCTGCGGGACCTTCTCATCAGGACGCACATGCAGAACATCAAGGACATCACCAGCAGCATCCACTTCGAGGCGTACCGTGTGAAGCGCCTCAACGAGGGCAGCAGCGCCATGGCCAACGGCATGGAGGAGAAGGAGCCAGAAGCCCCGGAGATGTAG MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQLREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKEKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGGTRTSSGRLRRLGDSSGPALKRSFEVEEVETPNSTPPRRVQTPLLRATVASSTQKFQDLGVKNSEPSARHVDSLSQRSPKASLRRVELSGPKAAEPVSRRTELSIDISSKQVENAGAIGPSRFGLKRAEVLGHKTPEPAPRRTEITIVKPQESAHRRMEPPASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQLQSRLEPKPQPPVAEATPRSQEATEAAPSCVGDMADTPRDAGLKQAPASRNEKAPVDFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYRVKRLNEGSSAMANGMEEKEPEAPEM* FALSE TRUE hsa-mir-4730 chr17:80419418-80419493:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE septin 9 2 AML* leukaemia_lymphoma fusion translocation 28134 TSEN2::ENSG00000285517 ENSG00000154743.19::ENSG00000285517.1 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12505231:+ chr3:12525920-12583048:+ chr3:12546730:+ ENSG00000285517 ENSG00000285517.1 lncRNA + + chr12:30795458-30879268:+ chr12:30878672:+ chr12:30948392-31032202:+ chr12:31031606:+ chr3:12506363,chr3:12506363 chr12:30853148,chr12:30853145 NA NA chr3:12547862,chr3:12547862 chr12:31006082,chr12:31006079 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 2 9 2 9 ONLY_REF_SPLICE YES_LDAS 0.1578 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28135 RNASEH1::RNASEH1-DT ENSG00000171865.10::ENSG00000234171.5 NUGC4 SRR8615244 SRR8670738 STOMACH carcinoma (signet_ring_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RNASEH1 ENSG00000171865.10 protein_coding - - chr2:3541430-3558333:- chr2:3552144:- chr2:3589020-3605923:- chr2:3599734:- RNASEH1-DT ENSG00000234171.5 lncRNA + + chr2:3558419-3564842:+ chr2:3561317:+ chr2:3606009-3612432:+ chr2:3608907:+ chr2:3551411 chr2:3560919 NA NA chr2:3599001 chr2:3608509 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 1 6 1 6 ONLY_REF_SPLICE YES_LDAS 0.1003 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28141 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 66 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:104000255:- chr11:103777917-104035107:- chr11:103870983:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MbtH|49-62|0.73^FAM181|76-108|2.6e-06^MbtH|168-194|9.8e-05^WW|173-202|2.5e-13^MbtH|231-243|0.012^WW|232-261|1.6e-14^FAM181|279-315|0.97 CUB-PARTIAL|~125-167|2e-25^PDGF|272-362|9.8e-19 ["YAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.67Mb] 12 13 12 7.01 ONLY_REF_SPLICE YES_LDAS 0.2086 GT 1.7232 AG 1.8323 ENST00000537274.5 1-321 ENST00000393158.7 125-1113 chr11|+|[0]102110849-102111169[2]<==>chr11|-|[2]103909694-103909819[0]|[2]103926912-103927126[1]|[0]103943452-103943650[0]|[2]103947662-103947724[0]|[2]103996065-103996245[2]|[1]104000051-104000255[1] atggatcccgggcagcagccgccgcctcaaccggccccccagggccaagggcagccgccttcgcagcccccgcaggggcagggcccgccgtccggacccgggcaaccggcacccgcggcgacccaggcggcgccgcaggcaccccccgccgggcatcagatcgtgcacgtccgcggggactcggagaccgacctggaggcgctcttcaacgccgtcatgaaccccaagacggccaacgtgccccagaccgtgcccatgaggctccggaagctgcccgactccttcttcaagccgccggagcccaaatcccactcccgacagAGAGCAATCACCTCACAGACTTGTACCGAAGAGATGAGACCATCCAGGTGAAAGGAAACGGCTACGTGCAGAGTCCTAGATTCCCGAACAGCTACCCCAGGAACCTGCTCCTGACATGGCGGCTTCACTCTCAGGAGAATACACGGATACAGCTAGTGTTTGACAATCAGTTTGGATTAGAGGAAGCAGAAAATGATATCTGTAGGTATGATTTTGTGGAAGTTGAAGATATATCCGAAACCAGTACCATTATTAGAGGACGATGGTGTGGACACAAGGAAGTTCCTCCAAGGATAAAATCAAGAACGAACCAAATTAAAATCACATTCAAGTCCGATGACTACTTTGTGGCTAAACCTGGATTCAAGATTTATTATTCTTTGCTGGAAGATTTCCAACCCGCAGCAGCTTCAGAGACCAACTGGGAATCTGTCACAAGCTCTATTTCAGGGGTATCCTATAACTCTCCATCAGTAACGGATCCCACTCTGATTGCGGATGCTCTGGACAAAAAAATTGCAGAATTTGATACAGTGGAAGATCTGCTCAAGTACTTCAATCCAGAGTCATGGCAAGAAGATCTTGAGAATATGTATCTGGACACCCCTCGGTATCGAGGCAGGTCATACCATGACCGGAAGTCAAAAGTTGACCTGGATAGGCTCAATGATGATGCCAAGCGTTACAGTTGCACTCCCAGGAATTACTCGGTCAATATAAGAGAAGAGCTGAAGTTGGCCAATGTGGTCTTCTTTCCACGTTGCCTCCTCGTGCAGCGCTGTGGAGGAAATTGTGGCTGTGGAACTGTCAACTGGAGGTCCTGCACATGCAATTCAGGGAAAACCGTGAAAAAGTATCATGAGGTATTACAGTTTGAGCCTGGCCACATCAAGAGGAGGGGTAGAGCTAAGACCATGGCTCTAGTTGACATCCAGTTGGATCACCATGAACGATGTGATTGTATCTGCAGCTCAAGACCACCTCGATAA MDPGQQPPPQPAPQGQGQPPSQPPQGQGPPSGPGQPAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQRAITSQTCTEEMRPSR*KETATCRVLDSRTATPGTCS*HGGFTLRRIHGYS*CLTISLD*RKQKMISVGMILWKLKIYPKPVPLLEDDGVDTRKFLQG*NQERTKLKSHSSPMTTLWLNLDSRFIILCWKISNPQQLQRPTGNLSQALFQGYPITLHQ*RIPL*LRMLWTKKLQNLIQWKICSSTSIQSHGKKILRICIWTPLGIEAGHTMTGSQKLTWIGSMMMPSVTVALPGITRSI*EKS*SWPMWSSFHVASSCSAVEEIVAVELSTGGPAHAIQGKP*KSIMRYYSLSLATSRGGVELRPWL*LTSSWITMNDVIVSAAQDHLD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 28142 ZNF407::DCC ENSG00000215421.10::ENSG00000187323.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4720 FALSE NA ZNF407 ENSG00000215421.10 protein_coding + + chr18:74597870-75065671:+ chr18:74631116:+ chr18:72265106-72777627:+ chr18:72343072:+ DCC ENSG00000187323.13 protein_coding + + chr18:52340197-53535899:+ chr18:53410452:+ chr18:49866567-51062269:+ chr18:50936822:+ chr18:74631367,chr18:74631366 chr18:53409811,chr18:53409807 NA NA chr18:72343323,chr18:72343322 chr18:50936181,chr18:50936177 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DCC:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:21.06Mb] 11 10 11 1.93 INCL_NON_REF_SPLICE YES_LDAS 0.1419 GT 1.8892 AG 1.371 ENST00000582337.5 1-97 ENST00000442544.7 2936-4344 chr18|+|[0]74631020-74631116[0]<==>chr18|+|[1]53410452-53410646[0]|[1]53416124-53416156[0]|[1]53435144-53435209[0]|[1]53450500-53450662[1]|[2]53459232-53459458[0]|[1]53467894-53468010[0]|[1]53486797-53486958[0]|[1]53499298-53499510[0]|[1]53526617-53526759[2]|[0]53530564-53530653[2] atgatggatagtgagaataaacccgaaaatgatgaggatgaaaagataaacaaagaagcacaagacttgacaaagctttcatcccataatgaagacgCTTACATCTTATTTTATACCTTGGACAAGAACATCCCAATTGATGACTGGATTATGGAAACAATCAGTGGTGATAGGCTTACTCATCAAATCATGGATCTCAACCTTGATACTATGTATTACTTTCGAATTCAAGCACGAAATTCAAAAGGAGTGGGGCCACTCTCTGATCCTATCCTCTTCAGGACTCTGAAAGTGGAACACCCTGACAAAATGGCTAATGACCAAGGTCGTCATGGAGATGGAGGTTATTGGCCAGTTGATACTAATTTGATTGATAGAAGCACCCTAAATGAGCCGCCAATTGGACAAATGCACCCCCCGCATGGCAGTGTCACTCCTCAGAAGAACAGCAACCTGCTTGTGATCATTGTGGTCACCGTTGGTGTCATCACAGTGCTGGTAGTGGTCATCGTGGCTGTGATTTGCACCCGACGCTCTTCAGCCCAGCAGAGAAAGAAACGGGCCACCCACAGTGCTGGCAAAAGGAAGGGCAGCCAGAAGGACCTCCGACCCCCTGATCTTTGGATCCATCATGAAGAAATGGAGATGAAAAATATTGAAAAGCCATCTGGCACTGACCCTGCAGGAAGGGACTCTCCCATCCAAAGTTGCCAAGACCTCACACCAGTCAGCCACAGCCAGTCAGAAACCCAACTGGGAAGCAAAAGCACCTCTCATTCAGGTCAAGACACTGAGGAAGCAGGGAGCTCTATGTCCACTCTGGAGAGGTCGCTGGCTGCACGCCGAGCCCCCCGGGCCAAGCTCATGATTCCCATGGATGCCCAGTCCAACAATCCTGCTGTCGTGAGCGCCATCCCGGTGCCAACGCTAGAAAGTGCCCAGTACCCAGGAATCCTCCCGTCTCCCACCTGTGGATATCCCCACCCGCAGTTCACTCTCCGGCCTGTGCCATTCCCAACACTCTCAGTGGACCGAGGTTTCGGAGCAGGAAGAAGTCAGTCAGTGAGTGAAGGACCAACTACCCAACAACCACCTATGCTGCCCCCATCTCAGCCTGAGCATTCTAGCAGCGAGGAGGCACCAAGCAGAACCATCCCCACAGCTTGTGTTCGACCAACTCACCCACTCCGCAGCTTTGCTAATCCTTTGCTACCTCCACCAATGAGTGCAATAGAACCGAAAGTCCCTTACACACCACTTTTGTCTCAGCCAGGGCCCACTCTTCCTAAGACCCATGTGAAAACAGCCTCCCTTGGGTTGGCTGGAAAAGCAAGATCCCCTTTGCTTCCTGTGTCTGTGCCAACAGCCCCTGAAGTGTCTGAGGAGAGCCACAAACCAACAGAGGATTCAGCCAATGTGTATGAACAGGATGATCTGAGTGAACAAATGGCAAGTTTGGAAGGACTCATGAAGCAGCTTAATGCCATCACAGGCTCAGCCTTTTAA MMDSENKPENDEDEKINKEAQDLTKLSSHNEDAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVEHPDKMANDQGRHGDGGYWPVDTNLIDRSTLNEPPIGQMHPPHGSVTPQKNSNLLVIIVVTVGVITVLVVVIVAVICTRRSSAQQRKKRATHSAGKRKGSQKDLRPPDLWIHHEEMEMKNIEKPSGTDPAGRDSPIQSCQDLTPVSHSQSETQLGSKSTSHSGQDTEEAGSSMSTLERSLAARRAPRAKLMIPMDAQSNNPAVVSAIPVPTLESAQYPGILPSPTCGYPHPQFTLRPVPFPTLSVDRGFGAGRSQSVSEGPTTQQPPMLPPSQPEHSSSEEAPSRTIPTACVRPTHPLRSFANPLLPPPMSAIEPKVPYTPLLSQPGPTLPKTHVKTASLGLAGKARSPLLPVSVPTAPEVSEESHKPTEDSANVYEQDDLSEQMASLEGLMKQLNAITGSAF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE DCC netrin 1 receptor 2 CRC, melanoma, SCC epithelial missense, nonsense, large_deletion 28143 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 68 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:103947724:- chr11:103777917-104035107:- chr11:103818452:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MbtH|49-62|0.73^FAM181|76-108|2.6e-06^MbtH|168-194|9.8e-05^WW|173-202|2.5e-13^MbtH|231-243|0.012^WW|232-261|1.6e-14^FAM181|279-315|0.97 none ["YAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.67Mb] 10 3 10 0.73 ONLY_REF_SPLICE YES_LDAS 0.1178 GT 1.7232 AG 1.9086 ENST00000537274.5 1-321 ENST00000393158.7 511-1113 chr11|+|[0]102110849-102111169[2]<==>chr11|-|[2]103909694-103909819[0]|[2]103926912-103927126[1]|[0]103943452-103943650[0]|[2]103947662-103947724[0] atggatcccgggcagcagccgccgcctcaaccggccccccagggccaagggcagccgccttcgcagcccccgcaggggcagggcccgccgtccggacccgggcaaccggcacccgcggcgacccaggcggcgccgcaggcaccccccgccgggcatcagatcgtgcacgtccgcggggactcggagaccgacctggaggcgctcttcaacgccgtcatgaaccccaagacggccaacgtgccccagaccgtgcccatgaggctccggaagctgcccgactccttcttcaagccgccggagcccaaatcccactcccgacagGAAGATTTCCAACCCGCAGCAGCTTCAGAGACCAACTGGGAATCTGTCACAAGCTCTATTTCAGGGGTATCCTATAACTCTCCATCAGTAACGGATCCCACTCTGATTGCGGATGCTCTGGACAAAAAAATTGCAGAATTTGATACAGTGGAAGATCTGCTCAAGTACTTCAATCCAGAGTCATGGCAAGAAGATCTTGAGAATATGTATCTGGACACCCCTCGGTATCGAGGCAGGTCATACCATGACCGGAAGTCAAAAGTTGACCTGGATAGGCTCAATGATGATGCCAAGCGTTACAGTTGCACTCCCAGGAATTACTCGGTCAATATAAGAGAAGAGCTGAAGTTGGCCAATGTGGTCTTCTTTCCACGTTGCCTCCTCGTGCAGCGCTGTGGAGGAAATTGTGGCTGTGGAACTGTCAACTGGAGGTCCTGCACATGCAATTCAGGGAAAACCGTGAAAAAGTATCATGAGGTATTACAGTTTGAGCCTGGCCACATCAAGAGGAGGGGTAGAGCTAAGACCATGGCTCTAGTTGACATCCAGTTGGATCACCATGAACGATGTGATTGTATCTGCAGCTCAAGACCACCTCGATAA MDPGQQPPPQPAPQGQGQPPSQPPQGQGPPSGPGQPAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQEDFQPAAASETNWESVTSSISGVSYNSPSVTDPTLIADALDKKIAEFDTVEDLLKYFNPESWQEDLENMYLDTPRYRGRSYHDRKSKVDLDRLNDDAKRYSCTPRNYSVNIREELKLANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTMALVDIQLDHHERCDCICSSRPPR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 28147 YAP1::PDGFD ENSG00000137693.14::ENSG00000170962.13 SW1271 SRR8615245 SRR8670710 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 67 TRUE 111 TRUE 50 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102111169:+ chr11:101981178-102104155:+ chr11:101981900:+ PDGFD ENSG00000170962.13 protein_coding - - chr11:103907189-104164379:- chr11:104000237:- chr11:103777917-104035107:- chr11:103870965:- chr11:102112244,chr11:102112245 chr11:104011258,chr11:104011257 NA NA chr11:101982975,chr11:101982976 chr11:103881986,chr11:103881985 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MbtH|49-62|0.73^FAM181|76-108|2.6e-06^MbtH|168-194|9.8e-05^WW|173-202|2.5e-13^MbtH|231-243|0.012^WW|232-261|1.6e-14^FAM181|279-315|0.97 CUB-PARTIAL|~143-167|2e-25^PDGF|272-362|9.8e-19 ["YAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.67Mb] 9 13 9 5.26 ONLY_REF_SPLICE YES_LDAS 0.1565 GT 1.7232 AG 1.9656 ENST00000537274.5 1-321 ENST00000393158.7 143-1113 chr11|+|[0]102110849-102111169[2]<==>chr11|-|[2]103909694-103909819[0]|[2]103926912-103927126[1]|[0]103943452-103943650[0]|[2]103947662-103947724[0]|[2]103996065-103996245[2]|[1]104000051-104000237[1] atggatcccgggcagcagccgccgcctcaaccggccccccagggccaagggcagccgccttcgcagcccccgcaggggcagggcccgccgtccggacccgggcaaccggcacccgcggcgacccaggcggcgccgcaggcaccccccgccgggcatcagatcgtgcacgtccgcggggactcggagaccgacctggaggcgctcttcaacgccgtcatgaaccccaagacggccaacgtgccccagaccgtgcccatgaggctccggaagctgcccgactccttcttcaagccgccggagcccaaatcccactcccgacagACTTGTACCGAAGAGATGAGACCATCCAGGTGAAAGGAAACGGCTACGTGCAGAGTCCTAGATTCCCGAACAGCTACCCCAGGAACCTGCTCCTGACATGGCGGCTTCACTCTCAGGAGAATACACGGATACAGCTAGTGTTTGACAATCAGTTTGGATTAGAGGAAGCAGAAAATGATATCTGTAGGTATGATTTTGTGGAAGTTGAAGATATATCCGAAACCAGTACCATTATTAGAGGACGATGGTGTGGACACAAGGAAGTTCCTCCAAGGATAAAATCAAGAACGAACCAAATTAAAATCACATTCAAGTCCGATGACTACTTTGTGGCTAAACCTGGATTCAAGATTTATTATTCTTTGCTGGAAGATTTCCAACCCGCAGCAGCTTCAGAGACCAACTGGGAATCTGTCACAAGCTCTATTTCAGGGGTATCCTATAACTCTCCATCAGTAACGGATCCCACTCTGATTGCGGATGCTCTGGACAAAAAAATTGCAGAATTTGATACAGTGGAAGATCTGCTCAAGTACTTCAATCCAGAGTCATGGCAAGAAGATCTTGAGAATATGTATCTGGACACCCCTCGGTATCGAGGCAGGTCATACCATGACCGGAAGTCAAAAGTTGACCTGGATAGGCTCAATGATGATGCCAAGCGTTACAGTTGCACTCCCAGGAATTACTCGGTCAATATAAGAGAAGAGCTGAAGTTGGCCAATGTGGTCTTCTTTCCACGTTGCCTCCTCGTGCAGCGCTGTGGAGGAAATTGTGGCTGTGGAACTGTCAACTGGAGGTCCTGCACATGCAATTCAGGGAAAACCGTGAAAAAGTATCATGAGGTATTACAGTTTGAGCCTGGCCACATCAAGAGGAGGGGTAGAGCTAAGACCATGGCTCTAGTTGACATCCAGTTGGATCACCATGAACGATGTGATTGTATCTGCAGCTCAAGACCACCTCGATAA MDPGQQPPPQPAPQGQGQPPSQPPQGQGPPSGPGQPAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQTCTEEMRPSR*KETATCRVLDSRTATPGTCS*HGGFTLRRIHGYS*CLTISLD*RKQKMISVGMILWKLKIYPKPVPLLEDDGVDTRKFLQG*NQERTKLKSHSSPMTTLWLNLDSRFIILCWKISNPQQLQRPTGNLSQALFQGYPITLHQ*RIPL*LRMLWTKKLQNLIQWKICSSTSIQSHGKKILRICIWTPLGIEAGHTMTGSQKLTWIGSMMMPSVTVALPGITRSI*EKS*SWPMWSSFHVASSCSAVEEIVAVELSTGGPAHAIQGKP*KSIMRYYSLSLATSRGGVELRPWL*LTSSWITMNDVIVSAAQDHLD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation FALSE NA NA NA NA NA NA NA NA NA 28152 ZC3H13::CIAO2A ENSG00000123200.17::ENSG00000166797.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 70 TRUE 121 TRUE 51 ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:46042164:- chr13:46528600-46626894:- chr13:46616299:- CIAO2A ENSG00000166797.11 protein_coding - - chr15:64072565-64093857:- chr15:64081151:- chr15:64364764-64386056:- chr15:64373350:- chr13:46024796 chr15:64083988 NA NA chr13:46598931 chr15:64376187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-CCCH|41-63|1.8e-10^zf-CCCH_2|41-62|7.4e-07^zf_CCCH_4|42-61|4.5e-10^zf-CCCH_4|42-61|1.2e-06 none none 26 20 26 12.91 ONLY_REF_SPLICE YES_LDAS 0.4153 GT 1.9086 AG 1.8892 ENST00000242848.8 1-339 ENST00000300030.8 290-483 chr13|-|[2]46042164-46042275[2]|[1]46044955-46045064[0]|[2]46045391-46045507[0]<==>chr15|-|[2]64072931-64073028[1]|[0]64075492-64075537[0]|[2]64081102-64081151[1] atgtcaaaaattagaaggaaggtcacagtggaaaataccaagactatatctgatagcacatcccgaagacccagtgtatttgagaggcttggacccagcactggcagtacagcagagacacagtgccgtaactggctgaagactggcaactgcctctatggaaacacatgtagattcgtacatggcccttcacctcgtggtaaaggttatagcagcaattatagaaggtcaccagaaagacctacaggggatcttagagaaagaatgaagaacaagcgccaagacgtggacactgagccccagaaacgaaatacagaggagtcatcctcacctgttaggGGCTGTGCTTAAGAGTAAAACTTCAGCGATGTTTACCATTTAAACATAAGTTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAAGAAGACATCAATAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAAACCCCAACTTACGGGAAATTGTGGAACAGTGTGTCCTTGAACCTGACTGA MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSTGSTAETQCRNWLKTGNCLYGNTCRFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVRGCA*E*NFSDVYHLNISWKSTFLKEPTQQKKTSISR*MTKSEWQLQWKTPTYGKLWNSVSLNLT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28154 IGF1R::LRRC28 ENSG00000140443.15::ENSG00000168904.15 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 72 TRUE 122 TRUE 52 IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99333923:+ chr15:99791567-99930934:+ chr15:99874128:+ chr15:98787540 chr15:99330599 NA NA chr15:99330769 chr15:99870804 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Recep_L_domain|51-160|4e-32^Furin-like|176-333|3e-43^Recep_L_domain|352-462|2.8e-33^fn3|495-585|5.1e-06^fn3-PARTIAL|620-640~|1e-05 none ["IGF1R:Oncogene","IGF1R:ArcherDX_panel","IGF1R:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.29Mb] 16 6 16 5.38 ONLY_REF_SPLICE YES_LDAS 0.2282 GT 1.7819 AG 1.7819 ENST00000649865.1 1-640 ENST00000301981.8 386-1104 chr15|+|[0]98649582-98649675[0]|[1]98707562-98708107[0]<==>chr15|+|[1]99333923-99334129[0]|[1]99352369-99352471[1]|[2]99361336-99361511[0]|[1]99363106-99363265[1]|[2]99386030-99386102[2] atgaagtctggctccggaggagggtccccgacctcgctgtgggggctcctgtttctctccgccgcgctctcgctctggccgacgagtggagaaatctgcgggccaggcatcgacatccgcaacgactatcagcagctgaagcgcctggagaactgcacggtgatcgagggctacctccacatcctgctcatctccaaggccgaggactaccgcagctaccgcttccccaagctcacggtcattaccgagtacttgctgctgttccgagtggctggcctcgagagcctcggagacctcttccccaacctcacggtcatccgcggctggaaactcttctacaactacgccctggtcatcttcgagatgaccaatctcaaggatattgggctttacaacctgaggaacattactcggggggccatcaggattgagaaaaatgctgacctctgttacctctccactgtggactggtccctgatcctggatgcggtgtccaataactacattgtggggaataagcccccaaaggaatgtggggacctgtgtccagggaccatggaggagaagccgatgtgtgagaagaccaccatcaacaatgagtacaactaccgctgctggaccacaaaccgctgccagaaaaAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGA MKSGSGGGSPTSLWGLLFLSAALSLWPTSGEICGPGIDIRNDYQQLKRLENCTVIEGYLHILLISKAEDYRSYRFPKLTVITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKKVGDLKELQTLDISTNRLLTLPERLHMCLSLQYLTVDRNRLWYVPRHLCQLPSLNELSMAGNRLAFLPLDLGRSRELQYVYVDNNIHLKGLPSYLYNKVIGCSGCGAPIQVSEVKLLSFSSGQRTVFLPAEVKAIGTEHDHVLPLQELAMRGLYHTYHSLLKDLNFLSPISLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQWKTTVSFVAYCCSTQCLQTFDLLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28156 PSMD1::SPATA3 ENSG00000173692.14::ENSG00000173699.17 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 75 FALSE NA FALSE NA PSMD1 ENSG00000173692.14 protein_coding + + chr2:231056845-231173116:+ chr2:231153666:+ chr2:231921559-232037830:+ chr2:232018380:+ SPATA3 ENSG00000173699.17 protein_coding + + chr2:230990324-231025055:+ chr2:231000366:+ chr2:231855039-231889770:+ chr2:231865081:+ chr2:231154933,chr2:231154932 chr2:230991434,chr2:230991430 NA NA chr2:232019647,chr2:232019646 chr2:231856149,chr2:231856145 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RPN2_N|3-270|4e-108^HEAT_2|8-66|1.8^Vfa1|206-238|0.55^HEAT_2|216-240|0.79^HEAT_PBS|223-236|10^Spore_coat_CotO|287-345|0.13^RPN2_C|292-306|7.6^RPN2_N|300-346|1.1e-05^HEAT_EZ|352-367|1.1^NCKAP5|373-396|6.2^HEAT_2|401-433|2.8^PC_rep|404-431|1.2e-07^PC_rep|441-473|2.3e-09^HEAT_EZ|456-476|0.4^HEAT_2|458-542|0.00035^PC_rep|476-508|1.3e-08^HEAT_PBS|482-501|4.3^PC_rep|511-544|3.7e-09^HEAT_2|511-581|0.0032^HEAT|567-581|0.78^PC_rep|588-609|0.022^HEAT_2|600-690|5e-17^HEAT|605-625|0.00062^HEAT_EZ|608-624|0.65^HEAT_EZ|614-657|0.00078^HEAT_PBS|614-623|0.2^HEAT|634-660|0.026^HEAT_EZ|646-690|9.8e-06^HEAT_PBS|648-673|0.031^PC_rep|651-685|5.4e-12^HEAT|669-689|0.034^PC_rep|729-748|0.0012^RPN2_C|786-921|8.4e-49^U1snRNP70_N|812-870|0.0013^Pox_Ag35|813-872|0.0038^Tim54|816-881|0.00039^Spore_coat_CotO|818-878|0.0078^NatA_aux_su|818-871|0.0012^NCKAP5|818-873|0.0012^DUF4775|820-870|0.0091^Vfa1|821-870|0.0031^Vma22_CCDC115|825-871|0.021^U1snRNP70_N|925-949|2.2 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_REARRANGEMENT:+:[31809] 15 4 15 3.9 ONLY_REF_SPLICE YES_LDAS 0.2017 GT 1.9656 AG 1.8256 ENST00000677230.1 1-2218 ENST00000424440.5 302-579 chr2|+|[0]231057026-231057041[0]|[1]231061267-231061310[2]|[0]231062248-231062321[1]|[2]231062506-231062675[0]|[1]231066906-231067111[2]|[0]231070025-231070168[2]|[0]231072189-231072415[1]|[2]231075511-231075571[2]|[0]231077034-231077162[2]|[0]231078659-231078747[1]|[2]231079536-231079614[2]|[0]231080141-231080314[2]|[0]231082883-231082994[0]|[1]231083567-231083763[2]|[0]231085019-231085114[2]|[0]231087117-231087181[1]|[2]231138736-231138850[2]|[0]231146240-231146356[2]|[0]231153564-231153666[0]<==>chr2|+|[1]231000366-231000537[1]|[2]231002684-231002789[2] atgatcacctcggccgctggaattatttctcttctggatgaagatgaaccacagcttaaggaatttgcactacacaaattgaatgcagttgttaatgacttctgggcagaaatttccgagtccgtagacaaaatagaggttttatacgaagatgaaggtttccggagtcggcagtttgcagccttagtggcatctaaagtattttatcacctgggggcttttgaggagtctctgaattatgctcttggagcaggggacctcttcaatgtcaatgataactctgaatatgtggaaactattatagcaaaatgcattgatcactacaccaaacaatgtgtggaaaatgcagatttgcctgaaggagaaaaaaaaccaattgaccagagattggaaggcatcgtaaataaaatgttccagcgatgtctagatgatcacaagtataaacaggctattggcattgctctggagacacgaagactggacgtctttgaaaagaccatactggagtcgaatgatgtcccaggaatgttagcttatagccttaagctctgcatgtctttaatgcagaataaacagtttcggaataaagtactaagagttctagttaaaatctacatgaacttggagaaacctgatttcatcaatgtttgtcagtgcttaattttcttagatgatcctcaggctgtgagtgatatcttagagaaactggtaaaggaagacaacctcctgatggcatatcagatttgttttgatttgtatgaaagtgctagccagcagtttttgtcatctgtaatccagaatcttcgaactgttggcacccctattgcttctgtgcctggatccactaatacgggtactgttccgggatcagagaaagacagtgactcgatggaaacagaagaaaagacaagcagtgcatttgtaggaaagacaccagaagccagtccagagcctaaggaccagactttgaaaatgattaaaattttaagtggtgaaatggctattgagttacatctgcagttcttaatacgaaacaataatacagacctcatgattctaaaaaacacaaaggatgcagtacggaattctgtatgtcatactgcaaccgttatagcaaactcttttatgcactgtgggacaaccagtgaccagtttcttagagataatttggaatggttagccagagccactaactgggcaaaatttactgctacagccagtttgggtgtaattcataagggtcatgaaaaagaagcattacagttaatggcaacataccttcccaaggatacttctccaggatcagcctatcaggaaggtggaggtctctatgcactaggtcttattcatgccaatcatggtggtgatataattgactatctgcttaatcagcttaagaacgccagcaatgatatcgttagacacggtggcagtctgggccttggtttggcagccatgggaactgcacgtcaagatgtttatgatttgctaaaaacaaacctttatcaggatgatgcagtaacaggggaagcagctggcctggccctaggtttggttatgttgggctctaaaaatgctcaggctattgaggacatggttggttatgcacaagaaactcaacatgagaagattctgcgtggtcttgcagttggcatagctttagtaatgtatgggaggatggaagaggctgatgctctcattgaatctctctgtcgtgacaaggacccaattcttcgaaggtctggaatgtatactgtagccatggcttattgtggctctggtaacaacaaagcaattcgacgcctgctacatgttgctgtaagtgatgttaatgatgatgtcaggagggcagcagtagaatcacttgggttcattctattcagaacccctgaacagtgcccaagtgttgtctctttgttgtcagagagttacaaccctcatgtgcgctacggagctgcaatggccttggggatatgctgtgctggtacaggaaacaaggaagccattaatttgctagaaccaatgacaaacgaccccgtgaactacgtgaggcaaggggcactcatagcttcagctctcatcatgatccagcagactgaaatcacttgtccaaaggtgaatcagttcagacagctgtattccaaagtcatcaatgataagcatgatgatgtcatggccaagtttggcgctattctggcccagggcatactggatgcagGGCCTCTGATTCGCGCCGGCCCGCATTCCTGCTCCTGTGCCACTTGCCCCTGCAGCTCCGCTTGCTGGCGTCGTCTGGGGCTATGCCATAGCCGCATCTTCGATGTCCTTCTGCCTCGGGACTGGCAGATGGCGCCAGGGAGAGGACTCCCCAACCTGCTCACCTTCTACAGAAAATCTTCAAGAAAACCCTCCAGTCATCGTAACGCGTGTCCTCCAAGCCCTCGGAACTGTGGCTGTGGCTCTGGGGGCTCTAGGAGCTGCCTACTACATCACTGA MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGPLIRAGPHSCSCATCPCSSACWRRLGLCHSRIFDVLLPRDWQMAPGRGLPNLLTFYRKSSRKPSSHRNACPPSPRNCGCGSGGSRSCLLHH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28157 AKAP8::SPIRE1 ENSG00000105127.10::ENSG00000134278.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 74 FALSE NA FALSE NA AKAP8 ENSG00000105127.10 protein_coding - - chr19:15353385-15379815:- chr19:15368235:- chr19:15464196-15490626:- chr19:15479046:- SPIRE1 ENSG00000134278.16 protein_coding - - chr18:12446512-12658107:- chr18:12546904:- chr18:12446511-12658106:- chr18:12546903:- chr19:15364711,chr19:15364711,chr19:15364711 chr18:12553349,chr18:12553396,chr18:12553379 NA NA chr19:15475522,chr19:15475522,chr19:15475522 chr18:12553348,chr18:12553395,chr18:12553378 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AKAP95|361-414|0.15^Actin_micro|386-538|8.7e-05^zf-C2H2_2|389-417|4.9e-05^AKAP95|415-546|4.6e-60^zf-C2H2_2|474-508|0.0044 KIND|618-630|0.069 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr18] 14 4 14 4 ONLY_REF_SPLICE YES_LDAS 0.1921 GT 1.7819 AG 1.8295 ENST00000269701.7 1-1160 ENST00000409402.9 373-2271 chr19|-|[1]15368235-15368322[1]|[0]15370146-15370179[0]|[2]15371952-15371998[1]|[0]15372218-15372347[0]|[2]15372851-15373340[2]|[1]15373786-15374065[1]|[0]15374603-15374635[1]|[0]15376976-15377014[1]|[0]15379713-15379731[0]<==>chr18|-|[2]12449638-12449896[2]|[1]12452255-12452391[0]|[2]12452485-12452512[2]|[1]12453068-12453138[0]|[2]12454346-12454483[0]|[2]12463351-12463493[1]|[0]12464868-12464958[0]|[2]12479699-12479871[1]|[0]12485959-12486000[1]|[0]12493072-12493201[0]|[2]12496016-12496102[0]|[2]12506477-12506641[0]|[2]12512454-12512531[0]|[2]12535476-12535601[0]|[2]12546674-12546904[0] atggaccagggctacggaggctacggggcgtggagtgctggacctgccaacacccagggtgcatatggaactggtgtggccagctggcaaggttatgaaaactacaattactatggcgcccagaacaccagtgtcaccacaggcgcaacctacagctacggcccagcctcgtgggaggccgccaaggccaatgatggcggcctggcggccggggcccctgccatgcacatggcctcttacggcccagagccatgcaccgacaattccgactccctcattgccaagatcaaccagcgtttggacatgatgtccaaggaaggaggcaggggcgggagcggcggcggtggggagggcatacaggaccgggagagctccttccgcttccagccgttcgagtcctatgactccaggccctgcctgccggagcacaacccctaccgccccagctacagctacgactatgagttcgacctggggtccgaccgcaatggcagctttggggggcagtacagtgaatgccgagacccagcccgggagcggggctcccttgatggcttcatgcggggccggggccagggccgcttccaggaccggagcaaccctggcaccttcatgcgcagcgaccccttcgtgccccccgctgcgtcctctgagcccctgtccacgccctggaacgagctgaactacgtgggtggacggggcctgggagggccctcccccagccggccacctccgtccctcttctcccagtccatggctcccgactacggcgtgatgggcatgcagggggcgggcggctatgacagcaccatgccctacggatgtggccgctcgcagcctcggatgcgggatcgggatcggcccaagaggagagggtttgaccgcttcggaccagatggcacgggcaggaaacggaagcagttccaactttacgaggagccagacaccaaactggcccgggttgacagtgaaggagatttctccgaaaatgatgacgcagctggtgacttccgctcaggagatgaagaattcaagggtgaggatgaactctgcgactctgggaggcaaagaggagagaaggaggacgaggacgaggatgtgaagaagagaagggaaaagcaaaggagaagagacaggacgcgggaccgtgcagccgacagGTCATTGAATCTTTGGGAATTATTATTTATAAAGCACTGGACTATGGTTTGAAGGAGAATGAAGAAAGGGAATTAAGCCCTCCCCTAGAGCAGCTTATCGATCACATGGCCAACACGGTGGAAGCTGACGGTAGCAATGATGAGGGCTATGAGGCTGCAGAAGAAGGCCTGGGAGATGAAGATGAAAAGAGAAAAATCTCAGCTATTCGGTCATATAGAGATGTCATGAAGTTGTGTGCTGCTCATCTCCCTACTGAATCAGATGCACCAAATCATTATCAGGCAGTATGTCGTGCACTGTTTGCAGAAACAATGGAGCTCCATACATTTCTGACCAAAATTAAGAGTGCGAAAGAGAATCTTAAGAAGATTCAAGAAATGGAAAAGAGCGATGAATCTAGCACAGACTTGGAAGAGCTGAAAAACGCTGACTGGGCACGATTCTGGGTACAGGTGATGAGGGATTTGAGGAATGGGGTAAAACTTAAGAAGGTCCAAGAGCGGCAGTACAACCCTTTGCCCATTGAATATCAGCTCACCCCTTATGAGATGTTAATGGATGACATTCGCTGCAAAAGATACACCTTGCGAAAAGTGATGGTGAATGGTGATATTCCCCCTCGGTTAAAAAAGAGTGCTCATGAAATCATCCTCGACTTCATCAGATCCAGACCTCCTTTAAATCCAGTCTCAGCCAGAAAACTGAAACCAACTCCACCACGGCCACGGAGCCTCCATGAAAGAATATTAGAAGAAATTAAAGCAGAAAGAAAGCTGCGGCCTGTATCACCAGAGGAGATTAGACGTAGCAGATTAGCAATGCGGCCACTTAGCATGTCTTACAGTTTTGACTTGTCAGATGTGACTACCCCTGAATCTACAAAGAATCTTGTGGAGTCATCTATGGTGAATGGAGGTTTGACATCACAAACAAAAGAAAACGGGTTAAGTACCTCACAGCAGGTGCCTGCACAGCGGAAGAAGCTCCTCAGAGCCCCAACTCTGGCCGAACTGGACAGCTCTGAGTCTGAGGAAGAAACGCTGCACAAGTCGACCAGCAGCAGCAGCGTGTCTCCCTCTTTCCCTGAAGAGCCAGTCCTGGAGGCCGTGTCCACAAGGAAGAAGCCTCCAAAATTCCTGCCCATATCATCAACACCCCAGCCAGAGAGACGGCAGCCACCCCAGAGACGACATTCCATTGAAAAGGAAACGCCTACTAACGTGAGGCAGTTCCTGCCGCCTTCCAGGCAGAGTTCCCGCTCTCTTGAGGAATTCTGCTACCCAGTGGAATGCCTCGCTCTTACTGTGGAAGAAGTGATGCATATTCGCCAGGTCCTGGTGAAGGCAGAGCTGGAAAAATACCAACAGTATAAAGACATCTACACCGCCTTGAAAAAAGGAAAGCTCTGCTTTTGTTGCCGAACCAGGAGGTTTTCCTTCTTCACTTGGTCTTATACCTGTCAGTTCTGTAAGAGGCCGGTGTGCTCACAGTGTTGCAAAAAGATGCGGCTGCCCTCCAAACCATACTCCACTCTTCCTATCTTTTCATTGGGACCTTCTGCTCTGCAAAGAGGGGAAAGTAGTATGAGGTCAGAAAAACCCTCCACTGCCCATCATCGGCCACTTCGGAGCATTGCCAGGTTCTCCTCAAAATCTAAGTCTATGGACAAATCAGATGAAGAACTCCAGTTTCCCAAAGAGTTGATGGAGGACTGGAGCACCATGGAGGTGTGTGTGGACTGCAAGAAGTTCATTTCGGAAATCATCAGTTCAAGCCGGCGCAGTCTGGTGTTGGCCAACAAAAGGGCCCGATTGAAAAGGAAAACGCAGTCTTTCTACATGTCCTCGCCAGGCCCCTCGGAGTACTGCCCTTCAGAGAGGACGATCAGTGAGATCTGA MDQGYGGYGAWSAGPANTQGAYGTGVASWQGYENYNYYGAQNTSVTTGATYSYGPASWEAAKANDGGLAAGAPAMHMASYGPEPCTDNSDSLIAKINQRLDMMSKEGGRGGSGGGGEGIQDRESSFRFQPFESYDSRPCLPEHNPYRPSYSYDYEFDLGSDRNGSFGGQYSECRDPARERGSLDGFMRGRGQGRFQDRSNPGTFMRSDPFVPPAASSEPLSTPWNELNYVGGRGLGGPSPSRPPPSLFSQSMAPDYGVMGMQGAGGYDSTMPYGCGRSQPRMRDRDRPKRRGFDRFGPDGTGRKRKQFQLYEEPDTKLARVDSEGDFSENDDAAGDFRSGDEEFKGEDELCDSGRQRGEKEDEDEDVKKRREKQRRRDRTRDRAADRSLNLWELLFIKHWTMV*RRMKKGN*ALP*SSLSITWPTRWKLTVAMMRAMRLQKKAWEMKMKREKSQLFGHIEMS*SCVLLISLLNQMHQIIIRQYVVHCLQKQWSSIHF*PKLRVRKRILRRFKKWKRAMNLAQTWKS*KTLTGHDSGYR**GI*GMG*NLRRSKSGSTTLCPLNISSPLMRC*WMTFAAKDTPCEK*W*MVIFPLG*KRVLMKSSSTSSDPDLL*IQSQPEN*NQLHHGHGASMKEY*KKLKQKESCGLYHQRRLDVAD*QCGHLACLTVLTCQM*LPLNLQRILWSHLW*MEV*HHKQKKTG*VPHSRCLHSGRSSSEPQLWPNWTALSLRKKRCTSRPAAAACLPLSLKSQSWRPCPQGRSLQNSCPYHQHPSQRDGSHPRDDIPLKRKRLLT*GSSCRLPGRVPALLRNSATQWNASLLLWKK*CIFARSW*RQSWKNTNSIKTSTPP*KKESSAFVAEPGGFPSSLGLIPVSSVRGRCAHSVAKRCGCPPNHTPLFLSFHWDLLLCKEGKVV*GQKNPPLPIIGHFGALPGSPQNLSLWTNQMKNSSFPKS*WRTGAPWRCVWTARSSFRKSSVQAGAVWCWPTKGPD*KGKRSLSTCPRQAPRSTALQRGRSVRS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28158 ZC3H13::CIAO2A ENSG00000123200.17::ENSG00000166797.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 71 TRUE 121 TRUE 51 ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:46042164:- chr13:46528600-46626894:- chr13:46616299:- CIAO2A ENSG00000166797.11 protein_coding - - chr15:64072565-64093857:- chr15:64075537:- chr15:64364764-64386056:- chr15:64367736:- chr13:46024796 chr15:64083988 NA NA chr13:46598931 chr15:64376187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-CCCH|41-63|1.8e-10^zf-CCCH_2|41-62|7.4e-07^zf_CCCH_4|42-61|4.5e-10^zf-CCCH_4|42-61|1.2e-06 none none 13 14 13 3.31 ONLY_REF_SPLICE YES_LDAS 0.174 GT 1.9086 AG 1.8323 ENST00000242848.8 1-339 ENST00000300030.8 340-483 chr13|-|[2]46042164-46042275[2]|[1]46044955-46045064[0]|[2]46045391-46045507[0]<==>chr15|-|[2]64072931-64073028[1]|[0]64075492-64075537[0] atgtcaaaaattagaaggaaggtcacagtggaaaataccaagactatatctgatagcacatcccgaagacccagtgtatttgagaggcttggacccagcactggcagtacagcagagacacagtgccgtaactggctgaagactggcaactgcctctatggaaacacatgtagattcgtacatggcccttcacctcgtggtaaaggttatagcagcaattatagaaggtcaccagaaagacctacaggggatcttagagaaagaatgaagaacaagcgccaagacgtggacactgagccccagaaacgaaatacagaggagtcatcctcacctgttaggTTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAAGAAGACATCAATAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAAACCCCAACTTACGGGAAATTGTGGAACAGTGTGTCCTTGAACCTGACTGA MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSTGSTAETQCRNWLKTGNCLYGNTCRFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVRLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVLEPD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28159 ZKSCAN5::HELLS ENSG00000196652.12::ENSG00000119969.16 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 77 FALSE NA FALSE NA ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99506458:+ chr7:99102285-99132323:+ chr7:99104081:+ HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94588229:+ chr10:96305086-96373662:+ chr10:96347986:+ chr7:99509612,chr7:99509469,chr7:99509610,chr7:99509469 chr10:94580258,chr10:94580289,chr10:94580253,chr10:94580286 NA NA chr7:99107235,chr7:99107092,chr7:99107233,chr7:99107092 chr10:96340015,chr10:96340046,chr10:96340010,chr10:96340043 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SCAN|47-134|1.4e-43^KRAB|222-258|2.3e-16^zf-C2H2_8|332-395|0.0015^zf-H2C2_2|340-354|0.0029^zf-C2H2|346-368|1.9e-06^zf-C2H2_4|346-368|0.002^zf-C2H2_6|346-355|0.23^zf-C2H2_jaz|346-365|0.032^Zn-ribbon_8|347-382|0.0088^zf-met|347-364|1.3^zf-H2C2_2|363-385|1.2e-10^zf-C2H2|374-396|7e-09^zf-C2H2_4|374-396|1.5e-05^zf-C2H2_6|374-396|0.0082^zf-C2H2_jaz|374-393|0.16^Zn-ribbon_8|374-386|0.066^zf-met|375-394|0.28^zf-C2H2_8-PARTIAL|387-414~|0.0031^zf-H2C2_2|388-411|7.5e-12^BHD_1|388-403|1.6^zf-C2H2-PARTIAL|402-414~|1.1e-07^zf-C2H2_4-PARTIAL|402-414~|0.00036^zf-C2H2_6|402-411|0.001^zf-C2H2_jaz-PARTIAL|402-414~|0.015^Zn-ribbon_8-PARTIAL|402-414~|0.00032^zf-met-PARTIAL|402-414~|0.26^BHD_1-PARTIAL|413-414~|3.6 SNF2-rel_dom|1-63|1.5e-11^Shugoshin_C|64-76|1.7e-05^SNF2-rel_dom|111-134|0.00071^HDA2-3|112-294|8.4e-15^Helicase_C|158-270|1e-32 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr10] 12 2 12 1.26 ONLY_REF_SPLICE YES_LDAS 0.1415 GT 1.5656 AG 1.5301 ENST00000326775.10 1-414 ENST00000371327.3 1-1296 chr7|+|[0]99506045-99506458[2]<==>chr10|+|[0]94588229-94588390[2]|[0]94590413-94590552[1]|[2]94590638-94590776[2]|[0]94592229-94592312[2]|[0]94592395-94592514[2]|[0]94593499-94593615[2]|[0]94594695-94594854[0]|[1]94596860-94596956[1]|[2]94597035-94597111[0]|[1]94601528-94601611[0]|[1]94607910-94608025[2] atgataatgaccgaatcccgagaagttatagacttagaccccccagctgagacttcccaggagcaggaagaccttttcatagtgaaggtggaagaagaagactgcacctggatgcaggagtacaacccgccaacgtttgagactttttaccagcgcttcaggcacttccagtaccatgaggcttcaggaccccgggaggctctcagccaactccgggtgctctgctgtgagtggctgaggcccgagctgcacacgaaggagcagatcctggagctgctggtgctggagcagttcctgaccatcctgcctgaagagttccagccctgggtgagggaacatcaccctgaaagtggagaagaggcggtggccgtgatagaaaatatacagcgagaacttgaggaacgcagacagcagATTTTAACACCTTTCTTATTGAGAAGACTGAAGTCTGATGTTGCTCTTGAAGTTCCTCCTAAACGAGAAGTAGTCGTTTATGCTCCACTTTCAAAGAAGCAGGAGATCTTTTATACAGCCATTGTGAACCGTACAATTGCAAACATGTTTGGATCCAGTGAGAAAGAAACAATTGAGTTAAGTCCTACTGGTCGACCAAAACGACGAACTAGAAAATCAATAAATTACAGCAAAATAGATGATTTCCCTAATGAATTGGAAAAACTGATCAGTCAAATACAGCCAGAGGTGGACCGAGAAAGAGCTGTTGTGGAAGTGAATATCCCTGTAGAATCTGAAGTTAATCTGAAGCTGCAGAATATAATGATGCTACTTCGTAAATGTTGTAATCATCCATATTTGATTGAATATCCTATAGACCCTGTTACACAAGAATTTAAGATCGATGAAGAATTGGTAACAAATTCTGGGAAGTTCTTGATTTTGGATCGAATGCTGCCAGAACTAAAAAAAAGAGGTCACAAGGTGCTGCTTTTTTCACAAATGACAAGCATGTTGGACATTTTGATGGATTACTGCCATCTCAGAGATTTCAACTTCAGCAGGCTTGATGGGTCCATGTCTTACTCAGAGAGAGAAAAAAACATGCACAGCTTCAACACGGATCCAGAGGTGTTTATCTTCTTAGTGAGTACACGAGCTGGTGGCCTGGGCATTAATCTGACTGCAGCAGATACAGTTATCATTTATGATAGTGATTGGAACCCCCAGTCGGATCTTCAGGCCCAGGATAGATGTCATAGAATTGGTCAGACAAAGCCAGTTGTTGTTTATCGCCTTGTTACAGCAAATACTATCGATCAGAAAATTGTGGAAAGAGCAGCTGCTAAAAGGAAACTGGAAAAGTTGATCATCCATAAAAATCATTTCAAAGGTGGTCAGTCTGGATTAAATCTGTCTAAGAATTTCTTAGATCCTAAGGAATTAATGGAATTATTAAAATCTAGAGATTATGAAAGGGAAATAAAAGGATCAAGAGAGAAGGTCATTAGTGATAAAGATCTAGAGTTGTTGTTAGATCGAAGTGATCTTATTGATCAAATGAATGCTTCAGGACCAATTAAAGAGAAGATGGGGATATTCAAGATATTAGAAAATTCTGAAGATTCCAGTCCTGAATTAGAGACAGGGTTTCACCATCTTGGCCTGACTGGTCCCGAACTGATCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGCGTGGCCTGA MIMTESREVIDLDPPAETSQEQEDLFIVKVEEEDCTWMQEYNPPTFETFYQRFRHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILELLVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPELETGFHHLGLTGPELISGDLPTSASQSAGITSVSHCVA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28160 HELLS::ZKSCAN5 ENSG00000119969.16::ENSG00000196652.12 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 76 FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94576805:+ chr10:96305086-96373662:+ chr10:96336562:+ ZKSCAN5 ENSG00000196652.12 protein_coding + + chr7:99504662-99534700:+ chr7:99512453:+ chr7:99102285-99132323:+ chr7:99110076:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SNF2-rel_dom|104-104|0.7^ResIII|140-140|2^ResIII|223-308|5e-06^SNF2-rel_dom|226-342|1.4e-31 zf-C2H2-PARTIAL|~415-424|1.1e-07^zf-C2H2_4-PARTIAL|~415-424|0.00036^zf-C2H2_8-PARTIAL|~415-450|0.0031^zf-C2H2_jaz-PARTIAL|~415-420|0.015^Zn-ribbon_8-PARTIAL|~415-439|0.00032^BHD_1-PARTIAL|~415-431|3.6^zf-met-PARTIAL|~415-420|0.26^zf-H2C2_2|416-439|6.9e-07^zf-C2H2_4|430-452|6.1e-05^zf-C2H2_6|430-452|0.00012^Zn-ribbon_8|430-439|0.038^zf-C2H2|432-452|9e-07^zf-C2H2_jaz|432-450|0.024^zf-met|432-450|0.032^zf-H2C2_2|444-460|0.35^zf-H2C2_2|538-560|8.2e-09^zf-C2H2|549-571|1.9e-09^zf-C2H2_4|549-571|3.9e-05^zf-C2H2_6|549-558|0.00062^zf-C2H2_jaz|549-569|0.0052^Zn-ribbon_8|549-556|0.069^Zn-ribbon_8|550-585|0.003^zf-met|551-569|0.13^zf-C2H2_8|553-599|0.0071^BHD_1|558-576|0.6^zf-C2H2_6|562-569|5.6^zf-H2C2_2|563-588|1.1e-11^zf-C2H2_jaz|576-596|0.019^zf-C2H2|577-599|6.1e-09^zf-C2H2_4|577-599|9.5e-06^zf-C2H2_6|577-599|0.0024^Zn-ribbon_8|577-613|9.4e-05^zf-met|577-597|0.009^zf-H2C2_2|591-614|5.6e-12^BHD_1|591-604|3.5^zf-C2H2|605-627|9.1e-09^zf-C2H2_4|605-627|1.8e-05^zf-C2H2_6|605-614|0.019^zf-C2H2_jaz|605-624|0.015^Zn-ribbon_8|605-640|0.0018^zf-met|605-624|0.013^zf-C2H2_8|610-654|0.0053^BHD_1|616-632|0.23^zf-H2C2_2|619-643|1.2e-09^zf-C2H2|633-655|1.7e-08^zf-C2H2_4|633-655|1.1e-05^zf-C2H2_6|633-657|0.00017^zf-C2H2_jaz|633-653|0.03^Zn-ribbon_8|633-668|0.0047^zf-met|633-653|0.026^zf-H2C2_2|647-671|1.8e-06^zf-C2H2|661-683|8.5e-05^zf-C2H2_4|661-683|0.001^zf-C2H2_6|661-680|0.0039^Zn-ribbon_8|662-675|0.048^zf-H2C2_2|676-687|2.4^zf-H2C2_2|709-727|1.1e-05^zf-C2H2|717-739|1.4e-09^zf-C2H2_4|717-739|1.3e-06^zf-C2H2_6|717-740|1e-05^Zn-ribbon_8|717-752|0.088^zf-met|717-739|8.6e-05^zf-C2H2_jaz|718-738|0.0092^zf-H2C2_2|732-752|3.1e-08^zf-C2H2|745-765|0.0035^zf-C2H2_4|745-765|0.068^zf-C2H2_6|745-750|2^zf-met|745-751|1.2^Zn-ribbon_8|755-780|0.11^zf-C2H2_6|759-765|1.6^BHD_1|759-771|7.3^zf-H2C2_2|761-783|0.00099^zf-C2H2|773-795|8.4e-08^zf-C2H2_4|773-795|5.6e-05^zf-C2H2_6|773-782|0.02^zf-C2H2_8|774-821|0.0044^Zn-ribbon_8|774-808|0.0013^zf-met|774-793|0.46^zf-C2H2_jaz|775-792|0.59^BHD_1|782-802|0.00094^zf-H2C2_2|787-811|1.2e-11^zf-C2H2|801-823|1.1e-05^zf-C2H2_4|801-823|0.0005^zf-C2H2_6|801-825|0.0024^zf-C2H2_jaz|801-811|0.87^zf-met|801-823|0.42^zf-H2C2_2|816-827|0.67 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr7] 11 10 11 7.78 ONLY_REF_SPLICE YES_LDAS 0.2004 GT 1.9656 AG 1.7819 ENST00000698800.1 1-1032 ENST00000326775.10 415-2520 chr10|+|[0]94545922-94545952[0]|[1]94546377-94546498[2]|[0]94554126-94554248[2]|[0]94558139-94558195[2]|[0]94562691-94562727[0]|[1]94562812-94562876[2]|[0]94571388-94571429[2]|[0]94573960-94574187[2]|[0]94574554-94574736[2]|[0]94576662-94576805[2]<==>chr7|+|[0]99512453-99512591[0]|[1]99519827-99519909[2]|[0]99520169-99520304[0]|[1]99525813-99526418[0]|[1]99531108-99532249[2] atgccagcggaacggcccgcgggcagcggcggctcggaggctccagcaatggttgaacaactggacactgctgtgattaccccggccatgctagaagaggaagaacagcttgaagctgctggactagagagagagcggaagatgctggaaaaggctcgcatgtcttgggatagagagtcgacagaaattcggtaccgtagacttcaacatttgcttgaaaaaagcaatatatactccaaatttttattgacgaaaatggaacagcaacaattagaggaacagaagaagaaagaaaaattggagagaaaaaaggagtctttaaaagttaaaaagggtaaaaattcaattgatgcaagtgaagagaagccagttatgaggaaaaaaagaggaagagaagatgaatcatacaatatttcagaggtcatgtcaaaagaggaaattttgtctgtggctaaaaaaaataaaaaggagaatgaggatgaaaactcctcctctactaatctctgtgtggaagatcttcagaaaaataaagattcgaatagtataattaaagatagattgtctgaaacggttaggcagaatactaaattcttttttgacccagtccggaagtgtaatggtcagccagtaccttttcaacaaccaaagcacttcactggaggagtgatgcgatggtaccaagtagaaggcatggaatggcttaggatgctttgggaaaatggaattaatggcattttagcagatgaaatgggattgggtaagacagttcagtgcattgctactattgcattgatgattcagagaggagtaccaggaccttttcttgtctgtggccctttgtctacacttcctaactggatggctgaattcaaaagatttacaccagatatccctacaatgttatatcatggaacccaggaggaacgtcaaaaattggtaagaaatatttacaaacggaaagggactttgcagattcatcctgtggtaatcacgtcatttgaaatagccatgagagaccgaaatgcgttacagATTGTTGCCTGCCCTGATGTGCTTCCTCGGAAGATGGCAACACCTGGAGCAGTGCAGGAGTCCTGCAGCCCCCATCCCCTGACCGTGGACACCCAGCCTGAGCAAGCGCCACAGAAGCCTCGTCTCCTGGAGGAAAATGCCCTTCCTGTTCTCCAAGTTCCTTCCCTTCCCCTGAAGGACAGCCAGGAGCTGACAGCTTCACTTCTCTCAACTGGGTCCCAGAAGTTGGTGAAAATTGAAGAGGTGGCTGATGTGGCTGTATCCTTCATCCTGGAGGAATGGGGGCATTTGGACCAGTCCCAGAAGTCCCTTTATAGGGATGACAGGAAGGAGAACTATGGGAGTATTACTTCCATGGGTTATGAGTCCAGGGACAATATGGAGCTCATAGTGAAGCAGATTTCTGATGACTCTGAATCACACTGGGTGGCGCCAGAACACACCGAAAGGAGCGTTCCTCAGGATCCAGACTTTGCAGAAGTCAGTGACCTTAAAGGCATGGTACAAAGGTGGCAGGTCAACCCCACTGTGGGGAAATCAAGGCAGAATCCTTCCCAGAAAAGGGATCTGGATGCAATCACAGACATCAGCCCTAAGCAAAGCACACATGGCGAGAGAGGGCACAGATGCAGCGATTGTGGCAAATTCTTCCTCCAAGCCTCAAACTTTATTCAGCATCGGCGCATCCACACTGGAGAAAAACCGTTTAAGTGCGGAGAATGTGGGAAGAGCTACAATCAGCGGGTGCACCTCACCCAGCACCAGCGCGTCCACACAGGGGAGAAACCCTACAAATGTCAGGTGTGCGGAAAGGCTTTCCGGGTGAGTTCCCACCTGGTTCAGCACCACAGTGTCCACAGCGGAGAGAGGCCCTATGGCTGCAATGAGTGTGGGAAGAACTTCGGTCGCCATTCGCATCTGATCGAACACCTAAAACGCCACTTCAGGGAGAAATCCCAGAGATGCAGTGACAAAAGAAGTAAGAACACAAAATTAAGTGTTAAGAAGAAAATTTCAGAATATTCAGAAGCAGACATGGAACTATCTGGAAAAACCCAAAGAAATGTTTCTCAAGTTCAAGATTTTGGAGAAGGCTGTGAGTTTCAAGGCAAGCTGGATAGAAAGCAGGGAATTCCCATGAAAGAGATACTAGGACAACCATCTTCAAAGAGGATGAACTACAGTGAAGTCCCATATGTCCACAAAAAATCCTCCACTGGAGAGAGACCACATAAATGTAACGAGTGTGGGAAAAGCTTCATTCAGAGTGCACATCTTATTCAACATCAAAGAATACACACTGGGGAGAAACCATTCAGGTGTGAGGAATGTGGGAAAAGCTACAACCAACGCGTGCACCTAACTCAGCATCAGCGCGTCCACACAGGTGAGAAGCCCTACACCTGTCCCTTATGTGGGAAAGCCTTCAGAGTGAGGTCCCACCTTGTTCAGCATCAGAGCGTGCACAGTGGGGAGAGACCCTTCAAGTGTAACGAATGTGGGAAAGGCTTTGGGAGGCGTTCCCACCTGGCTGGACATCTTCGACTCCACTCCCGAGAGAAATCCCATCAGTGTCGTGAATGTGGGGAAATCTTTTTTCAGTACGTTAGCCTAATTGAACATCAGGTGCTCCACATGGGTCAGAAAAATGAAAAAAATGGCATCTGTGAGGAAGCATATAGTTGGAACTTGACAGTGATTGAAGACAAGAAGATTGAGTTACAAGAGCAGCCTTATCAGTGTGATATCTGTGGAAAAGCCTTTGGTTATAGCTCAGACCTCATTCAGCATTACAGAACTCATACAGCAGAGAAGCCCTATCAATGTGATATATGTAGAGAAAATGTTGGCCAGTGTTCCCACACCAAACAACATCAAAAAATCTACTCCAGCACAAAATCCCATCAATGTCATGAATGTGGCAGAGGCTTCACTCTGAAGTCACATCTTAATCAACATCAGAGAATCCATACTGGTGAGAAACCTTTTCAATGTAAAGAATGTGGAATGAATTTCAGCTGGAGTTGTAGCCTCTTTAAACACCTGAGAAGCCATGAGAGGACAGATCCCATAAATACCTTAAGTGTAGAGGGGTCTCTGTTGTAG MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQIVACPDVLPRKMATPGAVQESCSPHPLTVDTQPEQAPQKPRLLEENALPVLQVPSLPLKDSQELTASLLSTGSQKLVKIEEVADVAVSFILEEWGHLDQSQKSLYRDDRKENYGSITSMGYESRDNMELIVKQISDDSESHWVAPEHTERSVPQDPDFAEVSDLKGMVQRWQVNPTVGKSRQNPSQKRDLDAITDISPKQSTHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSQRCSDKRSKNTKLSVKKKISEYSEADMELSGKTQRNVSQVQDFGEGCEFQGKLDRKQGIPMKEILGQPSSKRMNYSEVPYVHKKSSTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPFRCEECGKSYNQRVHLTQHQRVHTGEKPYTCPLCGKAFRVRSHLVQHQSVHSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNEKNGICEEAYSWNLTVIEDKKIELQEQPYQCDICGKAFGYSSDLIQHYRTHTAEKPYQCDICRENVGQCSHTKQHQKIYSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPINTLSVEGSLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28161 IGF1R::LRRC28 ENSG00000140443.15::ENSG00000168904.15 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 73 TRUE 122 TRUE 52 IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98708107:+ chr15:99191768-99507759:+ chr15:99251336:+ LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99352369:+ chr15:99791567-99930934:+ chr15:99892574:+ chr15:98787540 chr15:99330599 NA NA chr15:99330769 chr15:99870804 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Recep_L_domain|51-160|4e-32^Furin-like|176-333|3e-43^Recep_L_domain|352-462|2.8e-33^fn3|495-585|5.1e-06^fn3-PARTIAL|620-640~|1e-05 none ["IGF1R:Oncogene","IGF1R:ArcherDX_panel","IGF1R:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.29Mb] 9 2 9 0.62 ONLY_REF_SPLICE YES_LDAS 0.1027 GT 1.7819 AG 1.9219 ENST00000649865.1 1-640 ENST00000301981.8 593-1104 chr15|+|[0]98649582-98649675[0]|[1]98707562-98708107[0]<==>chr15|+|[1]99352369-99352471[1]|[2]99361336-99361511[0]|[1]99363106-99363265[1]|[2]99386030-99386102[2] atgaagtctggctccggaggagggtccccgacctcgctgtgggggctcctgtttctctccgccgcgctctcgctctggccgacgagtggagaaatctgcgggccaggcatcgacatccgcaacgactatcagcagctgaagcgcctggagaactgcacggtgatcgagggctacctccacatcctgctcatctccaaggccgaggactaccgcagctaccgcttccccaagctcacggtcattaccgagtacttgctgctgttccgagtggctggcctcgagagcctcggagacctcttccccaacctcacggtcatccgcggctggaaactcttctacaactacgccctggtcatcttcgagatgaccaatctcaaggatattgggctttacaacctgaggaacattactcggggggccatcaggattgagaaaaatgctgacctctgttacctctccactgtggactggtccctgatcctggatgcggtgtccaataactacattgtggggaataagcccccaaaggaatgtggggacctgtgtccagggaccatggaggagaagccgatgtgtgagaagaccaccatcaacaatgagtacaactaccgctgctggaccacaaaccgctgccagaaaaATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGA MKSGSGGGSPTSLWGLLFLSAALSLWPTSGEICGPGIDIRNDYQQLKRLENCTVIEGYLHILLISKAEDYRSYRFPKLTVITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKNLGRSRELQYVYVDNNIHLKGLPSYLYNKVIGCSGCGAPIQVSEVKLLSFSSGQRTVFLPAEVKAIGTEHDHVLPLQELAMRGLYHTYHSLLKDLNFLSPISLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQWKTTVSFVAYCCSTQCLQTFDLLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28163 PRKCE::SNX17 ENSG00000171132.14::ENSG00000115234.11 CAPAN1 SRR8615247 SRR8639189 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 78 FALSE NA FALSE NA PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ SNX17 ENSG00000115234.11 protein_coding + + chr2:27370496-27377535:+ chr2:27371269:+ chr2:27593363-27600402:+ chr2:27594136:+ chr2:45709212,chr2:45709210 chr2:27370549,chr2:27370547 NA NA chr2:45936351,chr2:45936349 chr2:27593416,chr2:27593414 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|7-116|6.3e-18^PKC_C2|38-123|5.1e-10 PX-PARTIAL|~64-103|6.6e-22^FERM_M|80-90|2.4^Nod1|81-150|9.3e-06^SNX17-27-31_F1_FERM|117-206|1.7e-38^RA|119-204|1.7e-07^Ras_bdg_2|120-203|3.9e-07^SNX17-31_F2_FERM|207-267|1.3e-34^FERM_M|214-251|0.00071^SNX17_FERM_C|216-247|1.3^FERM_M|242-271|1.3e-05^PX|257-284|0.47^SNX17_FERM_C|270-384|3.5e-40 ["Klijn_CellLines","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:18.27Mb] 6 5 6 4.57 ONLY_REF_SPLICE YES_LDAS 0.1128 GT 1.9656 AG 1.8256 ENST00000421201.1 1-348 ENST00000233575.7 64-1413 chr2|+|[0]45652101-45652448[2]<==>chr2|+|[0]27371269-27371343[2]|[0]27372623-27372740[0]|[1]27373247-27373311[2]|[0]27373861-27373971[2]|[0]27374085-27374175[0]|[1]27374346-27374433[1]|[2]27374689-27374758[2]|[0]27375061-27375153[2]|[0]27375506-27375709[2]|[0]27375846-27375971[2]|[0]27376106-27376183[2]|[0]27376313-27376387[2]|[0]27376479-27376520[2]|[0]27376606-27376719[2] atggtagtgttcaatggccttcttaagatcaaaatctgcgaggccgtgagcttgaagcccacagcctggtcgctgcgccatgcggtgggaccccggccgcagactttccttctcgacccctacattgccctcaatgtggacgactcgcgcatcggccaaacggccaccaagcagaagaccaacagcccggcctggcacgacgagttcgtcaccgatgtgtgcaacggacgcaagatcgagctggctgtctttcacgatgcccccataggctacgacgacttcgtggccaactgcaccatccagtttgaggagctgctgcagaacgggagccgccacttcgaggactggGCCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGGGTGCGCTACAGCCAGCTCCTGGGGCTGCACGAGCAGCTTCGGAAGGAGTATGGGGCCAATGTGCTTCCTGCATTCCCCCCAAAGAAGCTTTTCTCTCTGACTCCTGCTGAGGTAGAACAGAGGAGAGAGCAGTTAGAGAAGTACATGCAAGCTGTTCGGCAAGACCCATTGCTTGGGAGCAGCGAGACTTTCAACAGTTTCCTGCGTCGGGCACAACAGGAGACACAGCAGGTCCCCACAGAGGAAGTGTCCTTGGAAGTGCTGCTCAGCAACGGGCAGAAAGTTCTGGTCAACGTGCTAACTTCAGATCAGACTGAGGATGTCCTGGAGGCTGTAGCTGCAAAGCTGGATCTTCCAGATGACTTGATTGGATACTTTAGTCTATTCTTAGTTCGAGAAAAAGAGGATGGAGCCTTTTCTTTTGTACGGAAGTTGCAAGAGTTTGAGCTGCCTTATGTGTCTGTCACCAGCCTTCGGAGTCAAGAGTATAAGATTGTGCTAAGGAAGAGTTATTGGGACTCTGCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAACCTGCTTTATGCTCAGACGGTATCAGATATTGAGCGTGGGTGGATCTTGGTCACCAAGGAACAGCACCGGCAACTCAAATCTCTGCAAGAGAAAGTCTCCAAGAAGGAGTTCCTGAGACTGGCCCAGACGCTGCGGCACTATGGCTACTTGCGCTTTGATGCCTGTGTGGCTGACTTCCCAGAAAAGGACTGTCCTGTGGTGGTGAGCGCGGGCAACAGTGAGCTCAGCCTGCAGCTCCGCCTGCCTGGCCAGCAACTCCGAGAAGGCTCCTTCCGGGTCACCCGCATGCGATGCTGGCGGGTCACCTCCTCTGTACCATTGCCCAGTGGAAGCACGAGCAGCCCAGGCCGGGGCCGGGGTGAGGTGCGCCTGGAACTGGCTTTTGAATACCTCATGAGCAAGGACCGGCTACAGTGGGTCACCATCACTAGCCCCCAGGCTATCATGATGAGCATCTGCTTGCAGTCCATGGTTGATGAACTGATGGTGAAGAAATCTGGCGGCAGTATCAGGAAGATGCTGCGCCGGCGGGTGGGGGGTACTCTGAGACGCTCAGACAGCCAGCAAGCAGTGAAGTCCCCACCACTGCTTGAGTCACCTGATGCCACCCGGGAGTCTATGGTCAAACTCTCAAGTAAGCTGAGTGCCGTGAGCTTGCGGGGAATTGGCAGTCCCAGCACAGATGCCAGTGCCAGTGATGTCCACGGCAATTTCGCCTTCGAGGGCATTGGAGATGAGGATCTGTAA MVVFNGLLKIKICEAVSLKPTAWSLRHAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVTSLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28165 UBXN8::ENSG00000253961 ENSG00000104691.16::ENSG00000253961.1 CAS1 SRR8615249 SRR8639192 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBXN8 ENSG00000104691.16 protein_coding + + chr8:30729131-30767006:+ chr8:30756887:+ chr8:30586648-30624522:+ chr8:30614404:+ ENSG00000253961 ENSG00000253961.1 lncRNA - - chr8:31167078-31177167:- chr8:31171318:- chr8:31024594-31034683:- chr8:31028834:- chr8:30759078,chr8:30759079 chr8:31171533,chr8:31171532 NA NA chr8:30616595,chr8:30616596 chr8:31029049,chr8:31029048 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 8 12 8 ONLY_REF_SPLICE YES_LDAS 0.2307 GT 1.8256 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28168 MTHFD1L::THBS2-AS1 ENSG00000120254.16::ENSG00000226445.2 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTHFD1L ENSG00000120254.16 protein_coding + + chr6:150865679-151101887:+ chr6:150972058:+ chr6:151186815-151423023:+ chr6:151293194:+ THBS2-AS1 ENSG00000226445.2 lncRNA + + chr6:169213254-169245773:+ chr6:169244920:+ chr6:169613349-169645868:+ chr6:169645015:+ chr6:150990248,chr6:150990248,chr6:150990238,chr6:150990248 chr6:169242641,chr6:169242762,chr6:169242611,chr6:169242638 NA NA chr6:151311384,chr6:151311384,chr6:151311374,chr6:151311384 chr6:169642736,chr6:169642857,chr6:169642706,chr6:169642733 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 100 86 100 86 ONLY_REF_SPLICE YES_LDAS 2.283 GT 1.5656 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28169 DMTN::NPM2 ENSG00000158856.19::ENSG00000158806.14 CCK81 SRR8615251 SRR8639191 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22080625:+ chr8:21906506-21940038:+ chr8:21938136:+ NPM2 ENSG00000158806.14 protein_coding + + chr8:22024125-22036897:+ chr8:22033130:+ chr8:21881636-21894408:+ chr8:21890641:+ chr8:22080843,chr8:22080842 chr8:22027775,chr8:22027771 NA NA chr8:21938354,chr8:21938353 chr8:21885286,chr8:21885282 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AbLIM_anchor|9-134|6.8e-42^AbLIM_anchor|127-355|1.8e-69^STAT1_TAZ2bind|299-305|0.0027^VHP|370-405|5e-18^STAT1_TAZ2bind|382-390|0.00094 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.01Mb];LOCAL_REARRANGEMENT:+:[12098] 47 62 46.84 51.85 ONLY_REF_SPLICE NO_LDAS 1.2113 GT 1.6895 AG 1.9656 ENST00000432128.6 1-957 ENST00000397940.5 271-645 chr8|+|[0]22066876-22066893[2]|[0]22067085-22067159[2]|[0]22067527-22067682[2]|[0]22069016-22069060[2]|[0]22069419-22069518[0]|[1]22069881-22069937[0]|[1]22070182-22070334[0]|[1]22072326-22072450[2]|[0]22073730-22073835[0]|[1]22080180-22080244[2]|[0]22080412-22080460[0]|[1]22080618-22080625[2]<==>chr8|+|[0]22033130-22033223[0]|[1]22034109-22034275[2]|[0]22034510-22034544[1]|[2]22036493-22036526[2]|[0]22036638-22036682[2] atggaacggctgcagaagcaaccacttacctcccccgggagcgtgagcccctcccgagattccagtgtgcctggctctccctccagcatcgtggccaagatggacaatcaggtgctgggctacaaggacctggctgccatccccaaggacaaggccatcctggacatcgagcggcccgacctcatgatctacgagcctcacttcacttattccctcctggaacacgtggagctgcctcgcagccgcgagcgctcgctgtcacccaaatccacatcccccccaccatccccagaggtgtgggcggacagccggtcgcctggaatcatctctcaggcctcggcccccagaaccactggaaccccccggaccagcctgccccatttccaccaccctgagacctcccgcccagattccaacatctacaagaagcctcccatctataagcagagagagtccgtgggaggcagccctcagaccaagcacctcatcgaggatctcatcatcgagtcatccaagtttcctgcagcccagcccccagaccccaaccagccagccaaaatcgaaaccgactactggccatgccccccgtctctggctgttgtggagacagaatggaggaagcggaaggcgtctcggaggggagcagaggaagaggaggaggaggaagatgacgactctggagaggagatgaaggctctcagggagcgtcagagagaggaactcagtaaggttacttccaacttgggaaagatgatcttgaaagaagagatggaaaagtcattgccgatccgaaggaaaacccgctctctgcctgaccggacacccttccatacctccttgcaccagggaacgtctaaatcttcctctctccccgcctatggcaggaccaccctgagccggctacagtccacagagttcagcccatcagggagtgagactggaagcccaggcctgcagGTCTCCATGGTAGGAGTGCAGCTTTCTCCCCCAGTTACTTTCCAGCTCCGGGCTGGCTCAGGACCCGTGTTCCTCAGTGGCCAGGAACGTTATGAAGCATCAGACCTAACCTGGGAGGAGGAGGAGGAAGAAGAAGGGGAGGAGGAGGAAGAGGAAGAGGAAGATGATGAGGATGAGGATGCAGATATATCTCTGGAGGAGCAAAGCCCTGTCAAACAAGTCAAAAGGCTGGTGCCCCAGAAGCAGGCGAGCGTGGCTAAGAAAAAAAAGCTGGAAAAAGAAGAAGAGGAAATAAGAGCCAGCGTTAGAGACAAGAGCCCTGTGAAAAAGGCCAAAGCCACAGCCAGAGCCAAGAAGCCAGGATTCAAGAAATGA MERLQKQPLTSPGSVSPSRDSSVPGSPSSIVAKMDNQVLGYKDLAAIPKDKAILDIERPDLMIYEPHFTYSLLEHVELPRSRERSLSPKSTSPPPSPEVWADSRSPGIISQASAPRTTGTPRTSLPHFHHPETSRPDSNIYKKPPIYKQRESVGGSPQTKHLIEDLIIESSKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSNLGKMILKEEMEKSLPIRRKTRSLPDRTPFHTSLHQGTSKSSSLPAYGRTTLSRLQSTEFSPSGSETGSPGLQVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28179 LDLR::SMARCA4 ENSG00000130164.15::ENSG00000127616.22 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 82 TRUE 148 TRUE 63 LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11113762:+ chr19:11200094-11244496:+ chr19:11224438:+ SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11058258:+ chr19:11071608-11190102:+ chr19:11168934:+ chr19:11115319,chr19:11115320 chr19:11054110,chr19:11054108 NA NA chr19:11225995,chr19:11225996 chr19:11164786,chr19:11164784 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ldl_recept_a|112-149|3.4e-16^EGF|113-138|0.76^hEGF|120-125|1.4^EGF_3|131-149|1.4^hEGF|132-142|3.2^EGF_CA|137-149|10^EGF|149-161|6.5^Ldl_recept_a|153-190|6e-15^hEGF|153-161|10^EGF_3|175-190|9.8^Ldl_recept_a|193-229|4.9e-16^EGF|195-211|0.024^hEGF|195-203|1.5^EGF_CA|207-221|10^EGF_3|208-229|4.7^Ldl_recept_a|233-270|2.6e-17^EGF|253-261|10^EGF_3|253-262|5.3^Ldl_recept_a|282-317|7.6e-18^EGF|284-308|10^hEGF|290-296|7.2^hEGF|300-308|5.8^EGF_3|301-317|10^hEGF|320-330|0.99^Ldl_recept_a|321-356|1.4e-15^FXa_inhibition|325-339|10^EGF_CA|329-329|10^EGF|329-345|0.69^hEGF|329-341|3.1^EGF_3|334-356|0.14^Ldl_recept_a|362-399|2.3e-14^hEGF|362-371|1^EGF|366-378|0.6^EGF_CA|374-388|0.3^Ldl_recept_a|398-411|0.99^EGF_CA|401-431|7.2e-05^FXa_inhibition|404-434|2.2e-11^EGF|404-430|2.1e-06^EGF_3|404-431|3.8e-05^hEGF|415-430|0.12^cEGF|421-443|3.5e-10^Ldl_recept_a|435-446|4.9^EGF_CA|440-478|8.9e-12^EGF|444-470|1.2e-06^FXa_inhibition|446-478|5.4e-09^EGF_3|452-472|9.7e-06^hEGF|454-469|2.3e-06^cEGF|460-479|1.9e-07^SGL|523-592|2.7e-05^Ldl_recept_b|525-569|2.8e-17^Ldl_recept_b|573-612|7.9e-17^Ldl_recept_b|615-655|2e-18^SGL|639-680|9.2e-05^Ldl_recept_b|659-700|8.8e-16^SGL|701-724|0.26^Ldl_recept_b|702-742|1.8e-11^FXa_inhibition|759-797|4.5e-12^EGF|760-787|0.0021^hEGF|760-767|6.5^hEGF|778-787|0.087^EGF_3|778-787|0.066^cEGF|780-797|6.2e-06^EGF_CA|780-789|0.36^Psg1|860-904|3.8e-05^EGF_CA|921-930|1.5 none ["SMARCA4:Oncogene","SMARCA4:FoundationOne_panel","SMARCA4:ArcherDX_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.02Mb];LOCAL_REARRANGEMENT:+:[23967] 608 654 608 333.86 ONLY_REF_SPLICE YES_LDAS 10.742 GT 1.9086 AG 1.9656 ENST00000252444.10 1-1844 ENST00000645236.1 974-1568 chr19|+|[0]11090595-11090919[0]|[1]11100223-11100345[0]|[1]11102664-11102786[0]|[1]11105220-11105600[0]|[1]11106565-11106687[0]|[1]11107392-11107514[0]|[1]11110652-11110771[0]|[1]11111514-11111639[0]|[1]11113278-11113449[1]|[2]11113535-11113762[1]<==>chr19|+|[2]11058258-11058363[2]|[0]11058788-11058889[2]|[0]11059753-11059885[0]|[1]11060045-11060187[2]|[0]11078997-11079107[2] atgcaggggaggcctggcgttcctccgcggttcctgtcacaaaggcgacgacaagtcccgggtccccggagccgcctccgcgacatacacgagtcgccctccgttatcctgggccctcctggcgaagtccccggtttccgctgtgctctgtggcgacacctccgtccccaccttgtcctggggggcgccctcgccccaccagccccgatcaagttcacagaggggcccccggccaccctcaaggcctcggttccttacgaggttgaaacgttgcctcagaatctccccgcccctccttggtctgcagccgagatcttcagccacgtgggcgacagatgcgaaagaaacgagttccagtgccaagacgggaaatgcatctcctacaagtgggtctgcgatggcagcgctgagtgccaggatggctctgatgagtcccaggagacgtgcttgtctgtcacctgcaaatccggggacttcagctgtgggggccgtgtcaaccgctgcattcctcagttctggaggtgcgatggccaagtggactgcgacaacggctcagacgagcaaggctgtccccccaagacgtgctcccaggacgagtttcgctgccacgatgggaagtgcatctctcggcagttcgtctgtgactcagaccgggactgcttggacggctcagacgaggcctcctgcccggtgctcacctgtggtcccgccagcttccagtgcaacagctccacctgcatcccccagctgtgggcctgcgacaacgaccccgactgcgaagatggctcggatgagtggccgcagcgctgtaggggtctttacgtgttccaaggggacagtagcccctgctcggccttcgagttccactgcctaagtggcgagtgcatccactccagctggcgctgtgatggtggccccgactgcaaggacaaatctgacgaggaaaactgcgctgtggccacctgtcgccctgacgaattccagtgctctgatggaaactgcatccatggcagccggcagtgtgaccgggaatatgactgcaaggacatgagcgatgaagttggctgcgttaatgtgacactctgcgagggacccaacaagttcaagtgtcacagcggcgaatgcatcaccctggacaaagtctgcaacatggctagagactgccgggactggtcagatgaacccatcaaagagtgcgggaccaacgaatgcttggacaacaacggcggctgttcccacgtctgcaatgaccttaagatcggctacgagtgcctgtgccccgacggcttccagctggtggcccagcgaagatgcgaagatatcgatgagtgtcaggatcccgacacctgcagccagctctgcgtgaacctggagggtggctacaagtgccagtgtgaggaaggcttccagctggacccccacacgaaggcctgcaaggctgtgggctccatcgcctacctcttcttcaccaaccggcacgaggtcaggaagatgacgctggaccggagcgagtacaccagcctcatccccaacctgaggaacgtggtcgctctggacacggaggtggccagcaatagaatctactggtctgacctgtcccagagaatgatctgcagcacccagcttgacagagcccacggcgtctcttcctatgacaccgtcatcagcagagacatccaggcccccgacgggctggctgtggactggatccacagcaacatctactggaccgactctgtcctgggcactgtctctgttgcggataccaagggcgtgaagaggaaaacgttattcagggagaacggctccaagccaagggccatcgtggtggatcctgttcatggCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAGTTACGCACATGCCAGATAACGGCGAGTCTGTTCCCCAGCAACTGCAACGGATCTGCCCACCACTGGGAAATGGAAGACCTTGCAGCCCAGGTCTTTGTAGACCAAGATTAG MQGRPGVPPRFLSQRRRQVPGPRSRLRDIHESPSVILGPPGEVPGFRCALWRHLRPHLVLGGALAPPAPIKFTEGPPATLKASVPYEVETLPQNLPAPPWSAAEIFSHVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEELRTCQITASLFPSNCNGSAHHWEMEDLAAQVFVDQD* FALSE TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 11234020 FALSE 11172460 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site 28180 LDLR::SMARCA4 ENSG00000130164.15::ENSG00000127616.22 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 83 TRUE 148 TRUE 63 LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11113762:+ chr19:11200094-11244496:+ chr19:11224438:+ SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11058255:+ chr19:11071608-11190102:+ chr19:11168931:+ chr19:11115319,chr19:11115320 chr19:11054110,chr19:11054108 NA NA chr19:11225995,chr19:11225996 chr19:11164786,chr19:11164784 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ldl_recept_a|112-149|3.4e-16^EGF|113-138|0.76^hEGF|120-125|1.4^EGF_3|131-149|1.4^hEGF|132-142|3.2^EGF_CA|137-149|10^EGF|149-161|6.5^Ldl_recept_a|153-190|6e-15^hEGF|153-161|10^EGF_3|175-190|9.8^Ldl_recept_a|193-229|4.9e-16^EGF|195-211|0.024^hEGF|195-203|1.5^EGF_CA|207-221|10^EGF_3|208-229|4.7^Ldl_recept_a|233-270|2.6e-17^EGF|253-261|10^EGF_3|253-262|5.3^Ldl_recept_a|282-317|7.6e-18^EGF|284-308|10^hEGF|290-296|7.2^hEGF|300-308|5.8^EGF_3|301-317|10^hEGF|320-330|0.99^Ldl_recept_a|321-356|1.4e-15^FXa_inhibition|325-339|10^EGF_CA|329-329|10^EGF|329-345|0.69^hEGF|329-341|3.1^EGF_3|334-356|0.14^Ldl_recept_a|362-399|2.3e-14^hEGF|362-371|1^EGF|366-378|0.6^EGF_CA|374-388|0.3^Ldl_recept_a|398-411|0.99^EGF_CA|401-431|7.2e-05^FXa_inhibition|404-434|2.2e-11^EGF|404-430|2.1e-06^EGF_3|404-431|3.8e-05^hEGF|415-430|0.12^cEGF|421-443|3.5e-10^Ldl_recept_a|435-446|4.9^EGF_CA|440-478|8.9e-12^EGF|444-470|1.2e-06^FXa_inhibition|446-478|5.4e-09^EGF_3|452-472|9.7e-06^hEGF|454-469|2.3e-06^cEGF|460-479|1.9e-07^SGL|523-592|2.7e-05^Ldl_recept_b|525-569|2.8e-17^Ldl_recept_b|573-612|7.9e-17^Ldl_recept_b|615-655|2e-18^SGL|639-680|9.2e-05^Ldl_recept_b|659-700|8.8e-16^SGL|701-724|0.26^Ldl_recept_b|702-742|1.8e-11^FXa_inhibition|759-797|4.5e-12^EGF|760-787|0.0021^hEGF|760-767|6.5^hEGF|778-787|0.087^EGF_3|778-787|0.066^cEGF|780-797|6.2e-06^EGF_CA|780-789|0.36^Psg1|860-904|3.8e-05^EGF_CA|921-930|1.5 none ["SMARCA4:Oncogene","SMARCA4:FoundationOne_panel","SMARCA4:ArcherDX_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.02Mb];LOCAL_REARRANGEMENT:+:[23967] 583 654 583 320.14 ONLY_REF_SPLICE YES_LDAS 10.3004 GT 1.9086 AG 1.9329 ENST00000252444.10 1-1844 ENST00000643296.1 4335-4854 chr19|+|[0]11090595-11090919[0]|[1]11100223-11100345[0]|[1]11102664-11102786[0]|[1]11105220-11105600[0]|[1]11106565-11106687[0]|[1]11107392-11107514[0]|[1]11110652-11110771[0]|[1]11111514-11111639[0]|[1]11113278-11113449[1]|[2]11113535-11113762[1]<==>chr19|+|[2]11058255-11058363[2]|[0]11058788-11058889[2]|[0]11059753-11059885[0]|[1]11060045-11060187[2]|[0]11061784-11061816[2] atgcaggggaggcctggcgttcctccgcggttcctgtcacaaaggcgacgacaagtcccgggtccccggagccgcctccgcgacatacacgagtcgccctccgttatcctgggccctcctggcgaagtccccggtttccgctgtgctctgtggcgacacctccgtccccaccttgtcctggggggcgccctcgccccaccagccccgatcaagttcacagaggggcccccggccaccctcaaggcctcggttccttacgaggttgaaacgttgcctcagaatctccccgcccctccttggtctgcagccgagatcttcagccacgtgggcgacagatgcgaaagaaacgagttccagtgccaagacgggaaatgcatctcctacaagtgggtctgcgatggcagcgctgagtgccaggatggctctgatgagtcccaggagacgtgcttgtctgtcacctgcaaatccggggacttcagctgtgggggccgtgtcaaccgctgcattcctcagttctggaggtgcgatggccaagtggactgcgacaacggctcagacgagcaaggctgtccccccaagacgtgctcccaggacgagtttcgctgccacgatgggaagtgcatctctcggcagttcgtctgtgactcagaccgggactgcttggacggctcagacgaggcctcctgcccggtgctcacctgtggtcccgccagcttccagtgcaacagctccacctgcatcccccagctgtgggcctgcgacaacgaccccgactgcgaagatggctcggatgagtggccgcagcgctgtaggggtctttacgtgttccaaggggacagtagcccctgctcggccttcgagttccactgcctaagtggcgagtgcatccactccagctggcgctgtgatggtggccccgactgcaaggacaaatctgacgaggaaaactgcgctgtggccacctgtcgccctgacgaattccagtgctctgatggaaactgcatccatggcagccggcagtgtgaccgggaatatgactgcaaggacatgagcgatgaagttggctgcgttaatgtgacactctgcgagggacccaacaagttcaagtgtcacagcggcgaatgcatcaccctggacaaagtctgcaacatggctagagactgccgggactggtcagatgaacccatcaaagagtgcgggaccaacgaatgcttggacaacaacggcggctgttcccacgtctgcaatgaccttaagatcggctacgagtgcctgtgccccgacggcttccagctggtggcccagcgaagatgcgaagatatcgatgagtgtcaggatcccgacacctgcagccagctctgcgtgaacctggagggtggctacaagtgccagtgtgaggaaggcttccagctggacccccacacgaaggcctgcaaggctgtgggctccatcgcctacctcttcttcaccaaccggcacgaggtcaggaagatgacgctggaccggagcgagtacaccagcctcatccccaacctgaggaacgtggtcgctctggacacggaggtggccagcaatagaatctactggtctgacctgtcccagagaatgatctgcagcacccagcttgacagagcccacggcgtctcttcctatgacaccgtcatcagcagagacatccaggcccccgacgggctggctgtggactggatccacagcaacatctactggaccgactctgtcctgggcactgtctctgttgcggataccaagggcgtgaagaggaaaacgttattcagggagaacggctccaagccaagggccatcgtggtggatcctgttcatggCAGCAGTGGACGTCAGCTCAGCGAGGTCTTCATCCAGCTGCCCTCGCGAAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAGCCCGTGGACTTCAAGAAGATAAAGGAGCGCATTCGCAACCACAAGTACCGCAGCCTCAACGACCTAGAGAAGGACGTCATGCTCCTGTGCCAGAACGCACAGACCTTCAACCTGGAGGGCTCCCTGATCTATGAAGACTCCATCGTCTTGCAGTCGGTCTTCACCAGCGTGCGGCAGAAAATCGAGAAGGAGGATGACAGTGAAGGCGAGGAGAGTGAGGAGGAGGAAGAGGGCGAGGAGGAAGGCTCCGAATCCGAATCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAGGACCGCTCAGGAAGTGGCAGCGAAGAAGACTGA MQGRPGVPPRFLSQRRRQVPGPRSRLRDIHESPSVILGPPGEVPGFRCALWRHLRPHLVLGGALAPPAPIKFTEGPPATLKASVPYEVETLPQNLPAPPWSAAEIFSHVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED* FALSE TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma LUNG exact 11234020 FALSE 11172460 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site 28182 TLK1::PPM1F ENSG00000198586.14::ENSG00000100034.14 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 85 FALSE NA FALSE NA TLK1 ENSG00000198586.14 protein_coding - - chr2:170990823-171231314:- chr2:171160290:- chr2:171847333-172087824:- chr2:172016800:- PPM1F ENSG00000100034.14 protein_coding - - chr22:21919425-21952848:- chr22:21934226:- chr22:22273798-22307220:- chr22:22288598:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none PP2C-PARTIAL|~356-406|1.2e-79 ["DepMap2023"];INTERCHROMOSOMAL[chr2--chr22] 109 85 109 85 ONLY_REF_SPLICE YES_LDAS 2.2126 GT 1.4566 AG 1.9899 ENST00000360843.7 1-139 ENST00000263212.10 356-1365 chr2|-|[0]171160290-171160428[0]<==>chr22|-|[2]21923092-21923471[1]|[0]21925569-21925662[0]|[2]21931148-21931291[0]|[2]21933391-21933579[0]|[2]21934024-21934226[1] atgagtgtccaaagtagcagtggaagtttggaggggccgccatcttggtcccagctctccacgtctccaaccccgggctcggcggcggcggccaggtccctgctgaatcacacgccgccatccgggaggcccagggaagTGCTGGATGCCCAAAGCCTGGCACAGAGTTTCTTTAACCGCCTTTGGGAAGTCGCCGGCCAGTGGCAGAAGCAGGTGCCATTGGCTGCCCGGGCCTCACAGCGGCAGTGGCTGGTCTCCATCCACGCCATCCGGAACACTCGCCGCAAGATGGAGGACCGGCACGTGTCCCTCCCTTCCTTCAACCAGCTCTTCGGCTTGTCTGACCCTGTGAACCGCGCCTACTTTGCTGTGTTTGATGGTCACGGAGGCGTGGATGCTGCGAGGTACGCCGCTGTCCACGTGCACACCAACGCTGCCCGCCAGCCAGAGCTGCCCACAGACCCTGAGGGAGCCCTCAGAGAAGCCTTCCGGCGCACCGACCAGATGTTTCTCAGGAAAGCCAAGCGAGAGCGGCTGCAGAGCGGCACCACAGGTGTGTGTGCGCTCATTGCAGGAGCGACCCTGCACGTCGCCTGGCTCGGGGATTCCCAGGTCATTTTGGTACAGCAGGGACAGGTGGTGAAGCTGATGGAGCCACACAGACCAGAACGGCAGGATGAGAAGGCGCGCATTGAAGCATTGGGTGGCTTTGTGTCTCACATGGACTGCTGGAGAGTCAACGGGACCCTGGCCGTCTCCAGAGCCATCGGGGATGTCTTCCAGAAGCCCTACGTGTCTGGGGAGGCCGATGCAGCTTCCCGGGCGCTGACGGGCTCCGAGGACTACCTGCTGCTTGCCTGTGATGGCTTCTTTGACGTCGTACCCCACCAGGAAGTTGTTGGCCTGGTCCAGAGCCACCTGACCAGGCAGCAGGGCAGCGGGCTCCGTGTCGCCGAGGAGCTGGTGGCTGCGGCCCGGGAGCGGGGCTCCCACGACAACATCACGGTCATGGTGGTCTTCCTCAGGGACCCCCAAGAGCTGCTGGAGGGCGGGAACCAGGGAGAAGGGGACCCCCAGGCAGAAGGGAGGAGGCAGGACTTGCCCTCCAGCCTTCCAGAACCTGAGACCCAGGCTCCACCAAGAAGCTAG MSVQSSSGSLEGPPSWSQLSTSPTPGSAAAARSLLNHTPPSGRPREVLDAQSLAQSFFNRLWEVAGQWQKQVPLAARASQRQWLVSIHAIRNTRRKMEDRHVSLPSFNQLFGLSDPVNRAYFAVFDGHGGVDAARYAAVHVHTNAARQPELPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQGSGLRVAEELVAAARERGSHDNITVMVVFLRDPQELLEGGNQGEGDPQAEGRRQDLPSSLPEPETQAPPRS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 1 Other TLK Q9UKI8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28184 MFNG::CARD10 ENSG00000100060.18::ENSG00000100065.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 86 FALSE NA FALSE NA MFNG ENSG00000100060.18 protein_coding - - chr22:37469063-37486393:- chr22:37479345:- chr22:37865101-37882431:- chr22:37875383:- CARD10 ENSG00000100065.15 protein_coding - - chr22:37490362-37519542:- chr22:37510421:- chr22:37886400-37915549:- chr22:37906428:- chr22:37478941,chr22:37478943,chr22:37478946 chr22:37515320,chr22:37515319,chr22:37515322 NA NA chr22:37874979,chr22:37874981,chr22:37874984 chr22:37911327,chr22:37911326,chr22:37911329 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Fringe|50-300|7.1e-112 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[3961] 38 32 38 32 ONLY_REF_SPLICE YES_LDAS 0.7984 GT 1.3383 AG 1.9656 ENST00000356998.8 1-561 ENST00000251973.10 700-3099 chr22|-|[2]37479345-37479498[2]|[1]37480197-37480299[1]|[0]37480721-37480769[0]|[2]37485923-37486177[0]<==>chr22|-|[2]37491159-37491393[2]|[1]37491755-37491867[0]|[2]37492435-37492550[1]|[0]37492644-37492802[1]|[0]37494086-37494188[0]|[2]37495517-37495586[2]|[1]37495760-37496003[1]|[0]37496449-37496560[0]|[2]37497019-37497178[2]|[1]37502602-37502725[1]|[0]37503185-37503213[2]|[1]37504186-37504301[0]|[2]37504635-37504769[0]|[2]37506192-37506383[0]|[2]37507829-37507954[0]|[2]37508527-37508682[0]|[2]37510212-37510421[0] atgcagtgccggctcccgcggggcctggctggagccctcctcaccctcctgtgcatggggctcctgtgtctgcggtaccacttgaacctgtccccgcagcgggtacaagggacccccgagctgagccagccgaacccggggccccctaagctacagctacacgatgtcttcattgcagtgaagacgacccgggctttccaccgcttgcgcctggagctgctgcttgacacgtgggtttccaggaccagggaacagacatttgtcttcaccgacagcccagacaaaggcctccaggagagactggggtcccaccttgtggtcaccaactgctccgcggaacacagccacccagctctgtcctgcaagatggctgctgagttcgacaccttcttggccagtgggcttaggtggttctgccatgtggacgatgacaactatgtgaacccaagggcgctgctgcagcttctgagagccttcccgctggcccgcgacgtctatgtgggaaggcccagcctgaaccggcccatccatgcctcagagccacagccccacaaccgcacgGTGGATCAGCTCAAGCTCAAAGTGAGTCGGCTGGAGGAAGAGTGTGCACTGCTTCGAAGGGCCAGGGGCCCGCCCCCTGGGGCAGAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGCCAGACAATGTGGACCTTGTCTCTGAGCTGCGTGCTGAGAACCAGCGGCTGACGGCGTCACTGCGGGAGTTGCAGGAGGGCCTGCAGCAGGAGGCGAGCCGGCCGGGGGCCCCGGGCTCCGAGCGCATCCTGCTGGACATCCTAGAGCATGACTGGCGGGAGGCGCAGGACAGCAGGCAGGAGCTGTGCCAGAAGCTGCATGCCGTGCAGGGGGAGCTGCAGTGGGCCGAGGAGCTGCGCGACCAGTACCTGCAGGAGATGGAAGACCTGCGGCTCAAGCACCGCACGCTGCAGAAGGACTGTGACCTGTACAAGCACCGCATGGCCACTGTCCTGGCCCAACTGGAGGAGATTGAGAAGGAGCGAGACCAGGCCATCCAGAGCCGTGACCGGATCCAGTTGCAGTACTCACAGAGCCTCATCGAGAAGGACCAGTACCGCAAGCAGGTGCGGGGCCTGGAGGCGGAGCGGGATGAGCTGCTGACAACGCTCACCAGCCTGGAGGGCACCAAGGCTCTGCTGGAGGTTCAGCTGCAGCGGGCCCAGGGTGGCACCTGCCTCAAGGCCTGTGCCTCCTCCCATTCCCTGTGCTCCAACCTCAGCAGCACTTGGAGCCTGAGCGAGTTCCCCTCCCCTCTGGGAGGCCCAGAAGCAACTGGGGAGGCAGCTGTCATGGGGGGACCTGAGCCTCACAACTCGGAGGAAGCCACAGACAGTGAAAAGGAGATCAATCGGCTCTCCATCCTGCCCTTCCCCCCCAGTGCCGGCTCCATCCTCCGCCGGCAGCGTGAGGAAGACCCCGCACCCCCTAAGAGATCCTTCAGCAGCATGTCAGACATCACAGGGAGTGTGACACTTAAGCCCTGGTCCCCTGGCCTCTCTTCGTCCTCATCCTCTGACAGCGTGTGGCCTTTGGGAAAGCCGGAAGGCCTCCTGGCTCGGGGCTGTGGCCTGGACTTCCTCAACAGGTCTCTGGCTATTCGGGTGTCTGGCCGGAGCCCCCCAGGGGGCCCAGAGCCGCAGGACAAGGGACCAGATGGACTGTCGTTTTATGGGGACAGATGGTCTGGGGCTGTGGTGCGCAGGGTGCTGTCTGGGCCTGGGTCCGCCAGGATGGAACCAAGAGAGCAAAGGGTGGAAGCTGCTGGTCTGGAGGGGGCGTGCCTGGAAGCCGAGGCCCAGCAGAGAACCTTGCTCTGGAATCAGGGGTCCACACTCCCCTCCCTGATGGACTCGAAGGCCTGCCAGTCCTTCCACGAGGCCCTAGAAGCCTGGGCAAAGGGACCAGGTGCCGAGCCCTTCTACATTCGTGCCAACCTCACCTTGCCTGAGAGGGCAGATCCCCATGCCCTTTGCGTGAAAGCCCAAGAGATCCTTCGACTGGTGGACTCGGCATACAAGCGGAGGCAGGAATGGTTCTGCACCCGGGTTGACCCCCTCACTCTGCGGGACCTGGACCGGGGCACCGTGCCCAATTATCAGAGAGCCCAGCAGCTCCTAGAAGTTCAGGAGAAATGCCTGCCCTCCAGCCGGCACCGAGGCCCCCGCAGTAATCTGAAGAAGAGAGCCCTGGACCAGCTGCGGCTGGTGAGGCCCAAGCCCGTGGGGGCGCCTGCAGGGGACTCCCCGGATCAGCTGCTGCTGGAGCCCTGTGCAGAGCCGGAGCGGAGCCTCAGACCCTACAGTTTGGTGCGGCCGCTACTGGTGTCTGCCCTGCGGCCCGTGGTGCTGTTGCCTGAGTGCCTGGCGCCCCGGCTCATCCGTAACCTGCTAGACCTGCCCAGCTCCCGGCTGGACTTCCAAGTGTGCCCAGCGGAAAGCCTCTCTGGGGAGGAACTGTGCCCATCCTCAGCGCCTGGAGCCCCCAAGGCTCAGCCTGCCACCCCTGGGCTAGGCAGCAGGATCCGGGCCATCCAGGAGTCTGTTGGGAAGAAGCACTGCCTGCTGGAGCTGGGTGCTCGGGGTGTGCGGGAGCTGGTGCAGAACGAGATCTACCCCATCGTCATCCACGTGGAGGTGACTGAGAAGAATGTCCGGGAAGTCAGGGGTCTGCTGGGCCGGCCGGGCTGGCGGGACTCAGAGCTGCTGCGGCAGTGCCGTGGCTCAGAGCAGGTGCTCTGGGGGCTGCCCTGCTCCTGGGTGCAGGTGCCCGCCCATGAGTGGGGACACGCAGAGGAGCTGGCCAAGGTGGTGCGCGGCCGCATCCTGCAGGAGCAGGCCCGCCTCGTGTGGGTGGAGTGCGGCAGCAGCAGAGGCTGCCCCAGCAGCAGTGAGGCCTGA MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNRTVDQLKLKVSRLEEECALLRRARGPPPGAEEKEKEKEKEKEPDNVDLVSELRAENQRLTASLRELQEGLQQEASRPGAPGSERILLDILEHDWREAQDSRQELCQKLHAVQGELQWAEELRDQYLQEMEDLRLKHRTLQKDCDLYKHRMATVLAQLEEIEKERDQAIQSRDRIQLQYSQSLIEKDQYRKQVRGLEAERDELLTTLTSLEGTKALLEVQLQRAQGGTCLKACASSHSLCSNLSSTWSLSEFPSPLGGPEATGEAAVMGGPEPHNSEEATDSEKEINRLSILPFPPSAGSILRRQREEDPAPPKRSFSSMSDITGSVTLKPWSPGLSSSSSSDSVWPLGKPEGLLARGCGLDFLNRSLAIRVSGRSPPGGPEPQDKGPDGLSFYGDRWSGAVVRRVLSGPGSARMEPREQRVEAAGLEGACLEAEAQQRTLLWNQGSTLPSLMDSKACQSFHEALEAWAKGPGAEPFYIRANLTLPERADPHALCVKAQEILRLVDSAYKRRQEWFCTRVDPLTLRDLDRGTVPNYQRAQQLLEVQEKCLPSSRHRGPRSNLKKRALDQLRLVRPKPVGAPAGDSPDQLLLEPCAEPERSLRPYSLVRPLLVSALRPVVLLPECLAPRLIRNLLDLPSSRLDFQVCPAESLSGEELCPSSAPGAPKAQPATPGLGSRIRAIQESVGKKHCLLELGARGVRELVQNEIYPIVIHVEVTEKNVREVRGLLGRPGWRDSELLRQCRGSEQVLWGLPCSWVQVPAHEWGHAEELAKVVRGRILQEQARLVWVECGSSRGCPSSSEA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28185 PAN3::PRSS53 ENSG00000152520.14::ENSG00000151006.8 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 87 TRUE 149 TRUE 64 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28220378:+ chr13:28712643-28869472:+ chr13:28794515:+ PRSS53 ENSG00000151006.8 protein_coding - - chr16:31083437-31089628:- chr16:31086491:- chr16:31094758-31100949:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-CCCH|47-68|2.3e-07^Torus|47-72|3.4e-05^zf_CCCH_4|49-68|1.4e-06^zf-CCCH_4|49-68|1.8e-06^zf-CCCH_2|49-68|0.00012^zf-CCCH_2|318-321|5.2^Pkinase|501-656|2.7e-06^Pan3_PK|742-879|2.2e-65 Trypsin-PARTIAL|~509-521|1.2e-38 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr13--chr16] 33 13 33 9.33 ONLY_REF_SPLICE YES_LDAS 0.4828 GT 1.9656 AG 1.8295 ENST00000380958.8 1-1000 ENST00000280606.7 509-1662 chr13|+|[0]28138658-28139087[0]|[1]28174272-28174393[2]|[0]28176493-28176559[0]|[1]28177865-28177935[2]|[0]28197185-28197346[2]|[0]28220231-28220378[0]<==>chr16|-|[2]31083790-31083809[1]|[0]31084119-31084335[0]|[2]31084558-31084703[1]|[0]31084780-31085024[2]|[1]31085110-31085260[1]|[0]31085964-31086183[0]|[2]31086337-31086491[1] atgaacagtggcggcggcctcccgcccccctcggccgccgcctccccttcctcctcctcgctggcggcggcggtggcggtggtggccccgccgggggtcgggggtgtccccggcggggcggcggtaggagtgaagctgaagtactgccgctactacgctaaggataagacttgcttctacggggaggagtgtcagttcctgcatgaggaccctgccgccggggctgccccgggcctcggcctccatagcaacagcgtccccctggctctggctggtgcacccgtggccggctttccgccgggagccgtcgcgggcgggggagctgggccgccccccgggcccaagaagccggacctgggggacccggggaccggagccgcagccggcggaggaggcagtagcgggggactcgatggaccgcggctggcaattccaggaatggatggaggtgctttaactgatacaagtctcacagattcctattttagcaccagctttattggagtcaatggatttggaagccctgtagaaacaaaatatcccctgatgcagagaatgactaatagtagcagctccccaagccttctaaatgacagtgccaagccatattcagcccatgatcctctaacatcacctgcttcatccttgtttaatgactttggtgccctcaacatctctcagagacgaaagccaaggaagtatcgcctggggatgctggaggagaggctagttccgatgggatcaaaggcacgaaaagcaaagaaccctattggctgccttgctgacaggtgtaaatcaggagtacccatcaatatggtttggtggaacagagtcacagaaaacaatttacagacaccaaatcctactgcaagcgagtttattcctaaaggaggatcaacctccaggctgagtaacgtgtcccagtcaaatatgtctgccttctctcaagttttctctcacccatccatgggaagccctgctactgctggattagcgccagCTCCTGGGACCCTACGCAATCTGCGCCTGCGTCTCATCAGTCGCCCCACATGTAACTGTATCTACAACCAGCTGCACCAGCGACACCTGTCCAACCCGGCCCGGCCTGGGATGCTATGTGGGGGCCCCCAGCCTGGGGTGCAGGGCCCCTGTCAGGGAGATTCCGGGGGCCCTGTGCTGTGCCTCGAGCCTGACGGACACTGGGTTCAGGCTGGCATCATCAGCTTTGCATCAAGCTGTGCCCAGGAGGACGCTCCTGTGCTGCTGACCAACACAGCTGCTCACAGTTCCTGGCTGCAGGCTCGAGTTCAGGGGGCAGCTTTCCTGGCCCAGAGCCCAGAGACCCCGGAGATGAGTGATGAGGACAGCTGTGTAGCCTGTGGATCCTTGAGGACAGCAGGTCCCCAGGCAGGAGCACCCTCCCCATGGCCCTGGGAGGCCAGGCTGATGCACCAGGGACAGCTGGCCTGTGGCGGAGCCCTGGTGTCAGAGGAGGCGGTGCTAACTGCTGCCCACTGCTTCATTGGGCGCCAGGCCCCAGAGGAATGGAGCGTAGGGCTGGGGACCAGACCGGAGGAGTGGGGCCTGAAGCAGCTCATCCTGCATGGAGCCTACACCCACCCTGAGGGGGGCTACGACATGGCCCTCCTGCTGCTGGCCCAGCCTGTGACACTGGGAGCCAGCCTGCGGCCCCTCTGCCTGCCCTATCCTGACCACCACCTGCCTGATGGGGAGCGTGGCTGGGTTCTGGGACGGGCCCGCCCAGGAGCAGGCATCAGCTCCCTCCAGACAGTGCCCGTGACCCTCCTGGGGCCTAGGGCCTGCAGCCGGCTGCATGCAGCTCCTGGGGGTGATGGCAGCCCTATTCTGCCGGGGATGGTGTGTACCAGTGCTGTGGGTGAGCTGCCCAGCTGTGAGGGCCTGTCTGGGGCACCACTGGTGCATGAGGTGAGGGGCACATGGTTCCTGGCCGGGCTGCACAGCTTCGGAGATGCTTGCCAAGGCCCCGCCAGGCCGGCGGTCTTCACCGCGCTCCCTGCCTATGAGGACTGGGTCAGCAGTTTGGACTGGCAGGTCTACTTCGCCGAGGAACCAGAGCCCGAGGCTGAGCCTGGAAGCTGCCTGGCCAACATAAGCCAACCAACCAGCTGCTGA MNSGGGLPPPSAAASPSSSSLAAAVAVVAPPGVGGVPGGAAVGVKLKYCRYYAKDKTCFYGEECQFLHEDPAAGAAPGLGLHSNSVPLALAGAPVAGFPPGAVAGGGAGPPPGPKKPDLGDPGTGAAAGGGGSSGGLDGPRLAIPGMDGGALTDTSLTDSYFSTSFIGVNGFGSPVETKYPLMQRMTNSSSSPSLLNDSAKPYSAHDPLTSPASSLFNDFGALNISQRRKPRKYRLGMLEERLVPMGSKARKAKNPIGCLADRCKSGVPINMVWWNRVTENNLQTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPAPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGPQPGVQGPCQGDSGGPVLCLEPDGHWVQAGIISFASSCAQEDAPVLLTNTAAHSSWLQARVQGAAFLAQSPETPEMSDEDSCVACGSLRTAGPQAGAPSPWPWEARLMHQGQLACGGALVSEEAVLTAAHCFIGRQAPEEWSVGLGTRPEEWGLKQLILHGAYTHPEGGYDMALLLLAQPVTLGASLRPLCLPYPDHHLPDGERGWVLGRARPGAGISSLQTVPVTLLGPRACSRLHAAPGGDGSPILPGMVCTSAVGELPSCEGLSGAPLVHEVRGTWFLAGLHSFGDACQGPARPAVFTALPAYEDWVSSLDWQVYFAEEPEPEAEPGSCLANISQPTSC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28188 FLOT1::LINC00243 ENSG00000137312.15::ENSG00000214894.7 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 89 FALSE NA FALSE NA FLOT1 ENSG00000137312.15 protein_coding - - chr6:30727709-30742732:- chr6:30742527:- chr6:30695486-30710509:- chr6:30710304:- LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr6:30742300,chr6:30742302 chr6:30806931,chr6:30806930 NA NA chr6:30710077,chr6:30710079 chr6:30774708,chr6:30774707 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.06Mb];LOCAL_REARRANGEMENT:-:[55921] 26 17 26 17 ONLY_REF_SPLICE YES_LDAS 0.4904 GT 1.6895 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28193 PIAS1::DPP6 ENSG00000033800.14::ENSG00000130226.18 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 90 FALSE NA FALSE NA PIAS1 ENSG00000033800.14 protein_coding + + chr15:68054309-68198603:+ chr15:68176654:+ chr15:68346647-68490941:+ chr15:68468992:+ DPP6 ENSG00000130226.18 protein_coding + + chr7:153748133-154894285:+ chr7:154566842:+ chr7:153445218-154685995:+ chr7:154263927:+ chr15:68180773,chr15:68180772 chr7:154547677,chr7:154547659 NA NA chr15:68473111,chr15:68473110 chr7:154244762,chr7:154244744 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PINIT|138-288|1.6e-35^Herpes_capsid|300-323|1.4^zf-Nse|325-379|1.2e-06^zf-MIZ|333-381|9.9e-24^zf-RING_2|337-379|0.0011^MRNIP|356-385|0.00019^MRNIP|414-474|0.51^Herpes_capsid|596-641|0.0065 DPPIV_N-PARTIAL|~370-500|1.1e-119^PD40|373-389|7.8e-05^PD40|436-454|0.042^Peptidase_S9|581-787|7.3e-44^DLH|625-660|0.36^Abhydrolase_3|626-685|9e-05^Abhydrolase_2|631-692|0.005^Abhydrolase_2|694-771|0.011^DLH|723-769|6.9e-05^UstYa|728-755|0.64 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr7] 14 13 14 13 ONLY_REF_SPLICE YES_LDAS 0.308 GT 1.5546 AG 1.9219 ENST00000545237.1 1-1487 ENST00000706130.1 370-2415 chr15|+|[0]68055884-68055913[2]|[0]68086306-68086750[0]|[1]68141946-68142030[1]|[2]68142290-68142337[1]|[2]68145816-68145906[2]|[0]68146566-68146700[2]|[0]68153590-68153695[0]|[1]68164731-68164804[2]|[0]68173732-68173892[1]|[2]68175637-68175767[0]|[1]68176474-68176654[1]<==>chr7|+|[0]154566842-154566916[2]|[0]154637821-154637873[1]|[2]154669360-154669441[2]|[0]154727767-154727887[0]|[1]154769417-154769571[2]|[0]154772845-154772942[1]|[2]154794079-154794202[2]|[0]154795845-154795883[2]|[0]154801355-154801462[2]|[0]154803864-154803955[1]|[2]154804917-154804964[1]|[2]154806994-154807112[0]|[1]154853780-154853827[0]|[1]154867995-154868093[0]|[1]154872624-154872693[1]|[2]154875906-154876100[1]|[2]154880888-154880942[2]|[0]154885633-154885744[0]|[1]154887676-154887734[2]|[0]154889272-154889344[0]|[1]154889457-154889530[2]|[0]154892334-154892480[2] atgtttacactccaagattcgtatgttaagcaaatggttatgagccttagagtttctgaactccaagtactgttgggctacgccgggagaaacaagcacggacgcaaacacgaacttctcacaaaagccctgcatttgctaaaggctggctgtagtcctgctgtgcaaatgaaaattaaggaactctataggcggcggttcccacagaaaatcatgacgcctgcagacttgtccatccccaacgtacattcaagtcctatgccagcaactttgtctccatctaccattccacaactcacttacgatggtcaccctgcatcatcgccattactccctgtttctcttctgggacctaaacatgaactggaactcccacatcttacatcagctcttcacccagtccatccggatataaaacttcaaaaattaccattttatgatttactggatgaactgataaaacccaccagtctagcatcagacaacagtcagcgctttcgagaaacctgttttgcatttgccttgacaccacaacaagtgcagcaaatcagtagttccatggatatttctgggaccaaatgtgacttcacagtacaggtccagttaaggttttgtttatcagaaaccagttgtccacaagaagatcacttcccacccaatctttgtgtgaaagtgaatacaaaaccttgcagccttccaggttaccttccacctacaaaaaatggcgtggaaccaaagcgacccagccgaccaattaatatcacctcacttgtccgactgtccacaacagtaccaaacacgattgttgtttcttggactgcagaaattggaagaaactattccatggcagtatatcttgtaaaacagttgtcctcaacagttcttcttcagaggttacgagcaaagggaataaggaatccggatcattctagagctttaattaaagagaagttgactgcggatccagacagtgaaatagctacaaccagcctaagggtttctctactatgtccacttggtaaaatgcggctgacaattccgtgtcgggcccttacatgttctcatctacaatgttttgacgcaactctttacattcagatgaatgagaaaaaaccaacctgggtttgtcctgtctgtgataagaaggctccatatgaacaccttattattgatggcttgtttatggaaatcctaaagtactgtacagactgtgatgaaatacaatttaaggaggatggcacttgggcaccgatgagatcaaaaaaggaagtacaggaagtttctgcctcttacaatggagtcgatggatgcttgagctccacattggagcatcaggtagcgtctcaccaccagtcctcaaataaaaacaagaaagtagaagtgattgacctaaccatagacagttcatctgatgaagaggaagaagagccatctgccaagaggacctgtccttccctatctcccacatcaccactaaataataaaggGAATCATTAAGAGCCATCAGATATGAAATATCTCCAGATAGAGAGTATGCACTTTTTTCATACAATGTGGAACCCATATATCAACACTCGTATACTGGATATTACGTCCTGAGCAAAATTCCTCATGGGGATCCTCAAAGTCTGGACCCACCAGAAGTCAGCAATGCAAAACTTCAGTATGCAGGATGGGGCCCTAAAGGCCAACAGCTGATATTTATTTTTGAAAACAATATCTACTACTGTGCACATGTCGGGAAACAGGCCATCCGTGTGGTCTCCACTGGCAAGGAAGGTGTGATTTACAATGGCCTCAGTGACTGGCTGTATGAAGAGGAGATTTTGAAGACACACATCGCACACTGGTGGTCTCCGGATGGCACGAGACTCGCCTACGCCGCCATCAATGATTCCCGTGTCCCCATCATGGAGCTCCCAACTTACACCGGCTCCATCTACCCCACCGTGAAGCCCTACCACTATCCCAAGGCTGGAAGTGAGAACCCCAGCATTTCCCTACACGTTATTGGCTTAAATGGACCCACCCATGATCTGGAGATGATGCCGCCTGATGATCCACGGATGAGGGAGTACTACATCACCATGGTGAAGTGGGCCACCAGCACCAAGGTCGCCGTGACCTGGCTGAACCGGGCGCAGAACGTGTCCATCCTCACCCTCTGCGACGCCACCACGGGGGTCTGCACGAAGAAACACGAGGATGAAAGTGAGGCCTGGCTCCACAGACAGAATGAAGAACCTGTGTTCTCCAAGGATGGCCGAAAGTTTTTCTTCATCAGAGCCATCCCCCAGGGAGGACGAGGGAAATTCTATCACATCACGGTGTCCTCGTCCCAGCCCAACAGCAGCAACGACAACATCCAGTCCATCACCTCCGGGGACTGGGACGTGACCAAGATCCTAGCCTACGATGAGAAGGGGAATAAGATCTACTTCCTGAGCACGGAGGACCTGCCTCGGAGACGACAACTCTACAGTGCCAACACGGTGGGCAACTTCAACAGGCAGTGCCTCTCCTGTGACCTGGTTGAGAACTGCACCTACTTCAGCGCTTCCTTCAGCCATAGCATGGACTTCTTCCTGCTCAAGTGCGAAGGTCCTGGTGTTCCTATGGTGACGGTGCACAACACAACAGATAAGAAAAAAATGTTTGACCTAGAAACAAATGAACATGTCAAGAAGGCCATAAATGACCGACAGATGCCTAAAGTGGAATACAGGGACATTGAGATTGATGATTACAACCTGCCCATGCAGATACTGAAGCCAGCAACCTTCACCGACACCACCCACTACCCTCTGCTCCTGGTGGTGGATGGCACCCCAGGCAGCCAGAGTGTGGCTGAGAAGTTCGAGGTGAGCTGGGAGACGGTGATGGTGAGCAGCCACGGCGCGGTGGTGGTAAAGTGTGACGGCCGTGGCAGCGGCTTCCAAGGGACCAAGCTCCTGCACGAAGTGAGGCGGCGGCTGGGCTTGCTGGAGGAGAAGGACCAGATGGAGGCCGTGCGGACGATGCTGAAGGAGCAGTACATTGACAGGACGCGCGTGGCCGTGTTTGGGAAGGATTACGGTGGCTACCTGAGCACCTACATCCTCCCAGCAAAGGGAGAAAATCAAGGCCAGACATTCACCTGCGGCTCTGCTCTCTCTCCAATAACAGACTTCAAACTCTATGCCTCTGCGTTTTCCGAGAGGTACTTGGGCCTCCATGGACTTGACAACAGAGCATACGAGATGACCAAGGTAGCCCATCGAGTCTCCGCGCTGGAAGAACAGCAGTTCCTGATCATTCATCCCACTGCCGATGAAAAAATTCATTTCCAGCACACAGCAGAACTCATTACACAACTAATTAGGGGAAAGGCTAATTACAGCTTACAGATTTACCCGGACGAAAGCCATTACTTTACCAGCTCCAGCCTCAAACAGCATCTGTACCGGTCCATCATCAACTTCTTCGTGGAATGCTTCAGGATCCAGGACAAACTGCTGACAGTCACAGCGAAAGAGGACGAGGAGGAGGACTAA MFTLQDSYVKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKIMTPADLSIPNVHSSPMPATLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSALHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISGTKCDFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNTIVVSWTAEIGRNYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNEKKPTWVCPVCDKKAPYEHLIIDGLFMEILKYCTDCDEIQFKEDGTWAPMRSKKEVQEVSASYNGVDGCLSSTLEHQVASHHQSSNKNKKVEVIDLTIDSSSDEEEEEPSAKRTCPSLSPTSPLNNKGNH*EPSDMKYLQIESMHFFHTMWNPYINTRILDITS*AKFLMGILKVWTHQKSAMQNFSMQDGALKANS*YLFLKTISTTVHMSGNRPSVWSPLARKV*FTMASVTGCMKRRF*RHTSHTGGLRMARDSPTPPSMIPVSPSWSSQLTPAPSTPP*SPTTIPRLEVRTPAFPYTLLA*MDPPMIWR*CRLMIHG*GSTTSPW*SGPPAPRSP*PG*TGRRTCPSSPSATPPRGSARRNTRMKVRPGSTDRMKNLCSPRMAESFSSSEPSPREDEGNSITSRCPRPSPTAATTTSSPSPPGTGT*PRS*PTMRRGIRSTS*ARRTCLGDDNSTVPTRWATSTGSASPVTWLRTAPTSALPSAIAWTSSCSSAKVLVFLW*RCTTQQIRKKCLT*KQMNMSRRP*MTDRCLKWNTGTLRLMITTCPCRY*SQQPSPTPPTTLCSWWWMAPQAARVWLRSSR*AGRR*W*AATARWW*SVTAVAAASKGPSSCTK*GGGWACWRRRTRWRPCGRC*RSSTLTGRAWPCLGRITVAT*APTSSQQREKIKARHSPAALLSLQ*QTSNSMPLRFPRGTWASMDLTTEHTR*PR*PIESPRWKNSSS*SFIPLPMKKFISSTQQNSLHN*LGERLITAYRFTRTKAITLPAPASNSICTGPSSTSSWNASGSRTNC*QSQRKRTRRRT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28194 ADCY1::HECW1 ENSG00000164742.16::ENSG00000002746.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 91 TRUE 152 TRUE 66 ADCY1 ENSG00000164742.16 protein_coding + + chr7:45574140-45723116:+ chr7:45610497:+ chr7:45613739-45762715:+ chr7:45650096:+ HECW1 ENSG00000002746.15 protein_coding + + chr7:43112629-43566001:+ chr7:43541163:+ chr7:43152228-43605600:+ chr7:43580762:+ chr7:45632245,chr7:45632245 chr7:43533605,chr7:43533602 NA NA chr7:45671844,chr7:45671844 chr7:43573204,chr7:43573201 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AC_N|40-283|4.7e-32^HNOBA|254-278|0.00032^Guanylate_cyc|294-476|2.5e-66^Adcy_cons_dom|519-609|1.4e-06^DUF6688|586-686|9.5e-06^DUF6594|599-663|8.9e-05^AC_N|601-686|6^DUF6594|730-767|2.2^DUF6688|736-810|1.8^HNOBA|817-848|0.025^Guanylate_cyc-PARTIAL|860-908~|7.1e-69 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:2.01Mb] 13 10 13 6.84 ONLY_REF_SPLICE YES_LDAS 0.2263 GT 1.9086 AG 1.8323 ENST00000297323.12 1-908 ENST00000453890.5 3918-4719 chr7|+|[0]45574544-45575182[2]|[0]45592759-45592908[2]|[0]45610379-45610497[1]<==>chr7|+|[2]43541163-43541261[1]|[2]43541869-43541998[2]|[0]43550445-43550591[2]|[0]43552222-43552336[0]|[1]43554592-43554790[1]|[2]43561815-43561926[2] atggcgggggcgccgcgcggcggaggcggcggcggaggcggcgcgggcgagcccgggggcgccgagcgggcggccgggacaagccgccggcgcgggctccgggcgtgcgacgaggagttcgcttgcccagagctggaggcgctgttccgcggctacacgctgcggctggagcaggcggccacgctgaaggcgctggccgttctcagcctgctggcgggcgcgctggcgctggccgagctgctgggcgcgccggggcccgcgcccggcctggccaagggctcacacccggtgcactgcgtcctcttcctggcgctgctcgtggtaaccaacgtccggtccctgcaggtgccccagctgcagcaggtcggccagctggcgctgctcttcagcctcaccttcgcgctgctctgctgtcctttcgcgctgggcggccccgcccggggttccgccggggccgctggggggccagcgaccgccgaacaaggggtttggcagctccttttggtcaccttcgtgtcctatgccttgctgcccgtgcgcagcctgctggccataggctttgggctcgtggtggctgcgtcgcacttgctggtcacagccaccttggtccccgccaagcgcccacgtctctggaggacgctcggtgccaatgccttgctcttcgtcggtgtgaacatgtatggggtctttgtgcggattctgactgagcgttcacagaggaaggcgttcctgcaggcccggagctgcattgaggaccgactgaggctggaggatgagaacgagaagcaggagcggctcctcatgagcctcctgccccggaacgttgccatggagatgaaggaggacttcctgaagccccctgagaggattttccacaagatttacatccagaggcacgacaatgtgagGTTCAGGTTTAGCGGTCGCATCCTGGGTCTGGCTCTGATCCATCAGTACCTTCTTGACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAGACTGCCCTGTGATTTGAGTGACCTGGAATATTTGGATGAGGAATTCCACCAGAGTTTGCAGTGGATGAAGGACAACAACATCACAGACATCTTAGACCTCACTTTCACTGTTAATGAAGAGGTTTTTGGACAGGTCACGGAAAGGGAGTTGAAGTCTGGAGGAGCCAACACACAGGTGACGGAGAAAAACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTGGAGCGCGGCGTGGTACAGCAGACCGAGGCGCTGGTGCGCGGCTTCTACGAGGTTGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGCTGGAGCTGGTGATAGCTGGCACCGCGGAAATCGACCTAAATGACTGGCGGAATAACACTGAGTACCGGGGAGGTTACCACGATGGGCATCTTGTGATCCGCTGGTTCTGGGCTGCGGTGGAGCGCTTCAATAATGAGCAGAGGCTGAGATTACTGCAGTTTGTCACGGGAACATCCAGCGTGCCCTACGAAGGCTTCGCAGCCCTCCGTGGGAGCAATGGGCTTCGGCGCTTCTGCATAGAGAAATGGGGGAAAATTACTTCTCTCCCCAGGGCACACACATGCTTCAACCGACTGGATCTTCCACCGTATCCCTCGTACTCCATGTTGTATGAAAAGCTGTTAACAGCAGTAGAGGAAACCAGCACCTTTGGACTTGAGTGA MAGAPRGGGGGGGGAGEPGGAERAAGTSRRRGLRACDEEFACPELEALFRGYTLRLEQAATLKALAVLSLLAGALALAELLGAPGPAPGLAKGSHPVHCVLFLALLVVTNVRSLQVPQLQQVGQLALLFSLTFALLCCPFALGGPARGSAGAAGGPATAEQGVWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTATLVPAKRPRLWRTLGANALLFVGVNMYGVFVRILTERSQRKAFLQARSCIEDRLRLEDENEKQERLLMSLLPRNVAMEMKEDFLKPPERIFHKIYIQRHDNVRFRFSGRILGLALIHQYLLDAFFTRPFYKALLRLPCDLSDLEYLDEEFHQSLQWMKDNNITDILDLTFTVNEEVFGQVTERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVRGFYEVVDSRLVSVFDARELELVIAGTAEIDLNDWRNNTEYRGGYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAALRGSNGLRRFCIEKWGKITSLPRAHTCFNRLDLPPYPSYSMLYEKLLTAVEETSTFGLE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28195 STK4::YWHAB ENSG00000101109.13::ENSG00000166913.13 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STK4 ENSG00000101109.13 protein_coding + + chr20:44966494-45080021:+ chr20:45001353:+ chr20:43595135-43708662:+ chr20:43629994:+ YWHAB ENSG00000166913.13 protein_coding + + chr20:44885702-44908532:+ chr20:44901531:+ chr20:43514343-43537173:+ chr20:43530172:+ chr20:45012318,chr20:45012317 chr20:44892220,chr20:44892216 NA NA chr20:43640959,chr20:43640958 chr20:43520861,chr20:43520857 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["STK4:Oncogene"];["DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr20:0.06Mb];LOCAL_REARRANGEMENT:+:[57942] 13 14 13 14 ONLY_REF_SPLICE YES_LDAS 0.308 GT 1.5546 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 4 STE STE20 MST Q13043 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28198 RYR2::BRINP3 ENSG00000198626.18::ENSG00000162670.11 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 88 FALSE NA FALSE NA RYR2 ENSG00000198626.18 protein_coding + + chr1:237042184-237833988:+ chr1:237569319:+ chr1:237205484-237997288:+ chr1:237732619:+ BRINP3 ENSG00000162670.11 protein_coding - - chr1:190097658-190478404:- chr1:190160890:- chr1:190066788-190447534:- chr1:190130020:- chr1:237584373,chr1:237584366 chr1:190161162,chr1:190161169 NA NA chr1:237747673,chr1:237747666 chr1:190130292,chr1:190130299 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ins145_P3_rec|10-222|1.5e-68^MIR|115-198|0.0039^MIR|226-405|7.7e-67^Ins145_P3_rec|288-312|0.097^RYDR_ITPR|455-648|1.1e-76^RIH_assoc|492-539|3.4^SPRY|672-806|5.8e-25^RyR|862-950|5.5e-36^RyR|976-1065|1.8e-33^SPRY|1100-1219|7.6e-29^EF-hand_6|1191-1203|1.3^SPRY|1426-1559|5.7e-24^RYDR_Jsol|1654-2090|2.6e-201^RYDR_ITPR|2124-2335|6.8e-62^RIH_assoc|2192-2216|5.3^Ion_trans|2276-2308|6.4^RyR|2701-2791|5e-36^RyR|2821-2904|3.6e-28 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:46.56Mb] 12 25 12 25 ONLY_REF_SPLICE YES_LDAS 0.422 GT 1.7056 AG 1.7056 ENST00000366574.7 1-3598 ENST00000367462.5 962-2301 chr1|+|[0]237042522-237042569[2]|[0]237270497-237270616[2]|[0]237330878-237330982[2]|[0]237355965-237355985[2]|[0]237364358-237364372[2]|[0]237369534-237369608[2]|[0]237374717-237374795[0]|[1]237377323-237377435[2]|[0]237387281-237387380[0]|[1]237388087-237388183[1]|[2]237417049-237417123[1]|[2]237423092-237423248[2]|[0]237441319-237441483[2]|[0]237445401-237445522[1]|[2]237454391-237454574[2]|[0]237456600-237456735[0]|[1]237469092-237469187[0]|[1]237491806-237491924[2]|[0]237492954-237493087[1]|[2]237496511-237496752[0]|[1]237500711-237500903[1]|[2]237503289-237503505[2]|[0]237506710-237506814[2]|[0]237511688-237511791[1]|[2]237530427-237530510[1]|[2]237548431-237548590[2]|[0]237550544-237550691[0]|[1]237566567-237566775[2]|[0]237569145-237569319[0]<==>chr1|-|[2]190098018-190099134[2]|[1]190160668-190160890[1] atggccgatgggggcgagggcgaagacgagatccagttcctgcgaactgatgatgaagtggttctgcagtgcaccgcaaccatccacaaagaacaacagaagctatgcttggcagcagaaggatttggcaacagactttgtttcttggagtccacttccaattccaagaatgtgcccccagacctctccatctgcacctttgtgctggagcagtccctctctgtccgggcgctgcaggagatgctggctaacaccgtggagaaatcagaagggcaagttgatgtggaaaaatggaaattcatgatgaagactgctcaaggtggtggtcatcgaacactcctctacggacatgccatattgctgcgccattcctatagtggcatgtatctgtgctgcctgtccacctcccggtcttcaactgataagctggcttttgatgttggcttgcaagaggacaccacaggggaggcttgttggtggaccatacaccctgcctctaagcagcgatcagaaggagaaaaagtacgagttggagatgacctcatcttagttagcgtgtcctctgaaaggtacttgcacttgtcttatggcaacggcagcttacacgtggatgccgctttccagcagactctctggagcgtggccccaatcagctcaggaagtgaggcagcccaagggtatctcattggtggtgatgtcctcaggttgctgcatggacacatggacgagtgtctcactgtcccttcaggagaacatggtgaagagcagcggagaactgttcattatgaaggtggcgctgtgtctgttcatgcacgttccctttggagactagagacgctaagagttgcgtggagtggaagccacataagatggggacagccattccgactacgccatgtcacaacaggaaaatacttgagtctcatggaagacaaaaaccttctactcatggacaaagagaaagctgatgtaaaatcaacagcatttaccttccggtcttccaaggaaaaattggatgtaggggtgagaaaagaagtagatggcatgggaacatctgaaataaaatacggtgactcagtatgctatatacaacatgtagacacaggcctatggcttacttaccagtctgtggacgtgaaatccgtgagaatgggatctatacaacgtaaggctattatgcatcatgaaggccacatggatgatggcataagtttgtcgagatcccagcatgaagaatcacgcacagcccgagttatccggagcacagtcttccttttcaatagatttataaggggccttgatgctctcagcaagaaagcgaaggcttccacagtcgatttgcctatagagtccgtaagcctaagtctgcaggatctcattggctacttccaccccccagatgagcatttagagcatgaagacaaacagaacagactacgagccctgaagaatcggcaaaatctcttccaggaagagggaatgatcaacctcgtgcttgagtgcatagaccgtttgcacgtctacagcagtgcagcacactttgctgatgttgctgggcgagaagcaggagagtcttggaaatccattctgaattctctgtatgagttgctggcggctctaattagaggaaatcgtaaaaactgtgctcaattttctggctccctcgactggttgatcagcagattggaaagactggaagcttcttcaggcattctggaagttttacactgtgttttagtagaaagtccagaagctctaaatattattaaagaaggacatattaaatctattatctcacttttagacaaacatggaagaaatcacaaggttctggatgtcttgtgctcactctgtgtttgccacggggttgcagtccgttctaaccagcatctcatctgtgacaatctcctaccaggaagagacttgttattgcagacacgtcttgtgaaccatgtcagcagcatgagacccaatatttttctgggcgtcagtgaaggttctgctcagtataagaaatggtactatgaattgatggtggaccacacagagccctttgtgacagctgaagcaactcacctgcgagtgggctgggcttccactgaaggatattctccctaccctggagggggcgaagagtggggtggaaatggtgttggagatgatctcttctcctatggatttgatggccttcatctctggtcaggttgtattgctcgtactgtaagctcaccaaaccaacatctgttaagaactgatgatgtcatcagttgctgtttagatctgagtgccccaagcatctcgttccgaattaatggacaacctgttcaaggaatgtttgagaatttcaacatcgatggcctcttctttccagtcgttagtttctctgcaggaataaaagtacgctttctgcttggagggcgacatggagaattcaaatttcttcctccacctgggtatgctccttgttatgaagctgttctgccaaaagaaaagttgaaagtggaacacagccgagagtacaagcaagaaagaacttacacacgcgacctgctgggccccacagtttccctgacgcaagctgccttcacacccatccctgtggataccagccagatcgtgttgcctcctcatctagaaagaataagagaaaaactggcagagaatatccatgaactctgggttatgaataaaattgagcttggctggcagtatggtccggttagagatgacaacaagagacaacacccatgcctggtggagttctccaagctgcctgaacaggagcgcaattacaacttacaaatgtcgcttgagaccctgaagactttgttggcattaggatgtcatgtgggtatatcagatgaacatgctgaagacaaggtgaaaaaaatgaagctacccaagaattaccagctgacaagtggatacaagcctgcccctatggacctgagctttatcaaactcaccccatcacaagaagcaatggtggacaagttggcagaaaatgcacataatgtgtgggcgcgggatcgaatccggcagggctggacttatggcatccaacaggacgtaaagaacagaagaaatcctcgccttgttccctacactcttctggatgaccgaaccaagaaatccaacaaggacagcctccgcgaggctgtgcgcacgctgctggggtacggctacaacttggaagcaccagatcaagatcatgcagccagagccgaagtgtgcagcggcaccggggaaaggttccgaatcttccgtgccgagaagacctatgcagtgaaggccggacggtggtattttgaatttgagacggtcactgctggagacatgagggttggttggagtcgtcctggttgtcaaccggatcaggagcttggctcagatgaacgtgcctttgcctttgatggcttcaaggcccagcggtggcatcagggcaatgaacactatgggcgctcttggcaagcaggcgatgtcgtggggtgtatggttgacatgaacgaacacaccatgatgttcacactgaatggtgaaatccttcttgatgattcaggctcagaactggctttcaaggactttgatgttggcgatgATGAATTCAAGTTATTTATGAAAAGGCTACCTATGAATTATTTCCTCAACACATCTACTATAATGCATTTGTGGACAATGGATTCTAATTTTCAGCGCCGTTATGAACAACTGGAGAACAGCATGAAACAACTTTTCCTAAAGGCGCAGAAAATTGTACACAAGCTTTTTAGCCTTAGCAAGAGGTGTCATAAACAACCCCTCATCAGCCTGCCAAGACAAAGAACCTCAACCTACTGGCTTACTCGCATCCAGTCTTTTCTCTACTGCAATGAGAACGGCCTCCTAGGCAGCTTTTCAGAAGAGACGCACTCGTGCACGTGTCCGAATGACCAGGTGGTCTGCACCGCGTTCCTGCCCTGCACAGTGGGAGACGCCTCTGCCTGCCTGACATGCGCACCAGACAACCGCACCCGCTGCGGCACCTGCAACACCGGCTACATGCTCAGCCAGGGGCTCTGCAAGCCTGAAGTCGCCGAGTCCACCGATCACTATATTGGCTTTGAAACTGACCTGCAAGATCTCGAGATGAAATATCTGCTGCAGAAAACGGACAGACGAATAGAAGTCCATGCCATTTTTATCAGCAATGACATGCGCCTCAATAGCTGGTTTGATCCCTCCTGGCGTAAGCGGATGCTCCTCACCTTGAAGAGCAATAAGTACAAGTCAAGTCTGGTCCATATGATTTTGGGTCTCTCTTTACAGATTTGCTTAACTAAAAACAGCACCTTGGAGCCAGTGTTGGCTGTTTATGTCAATCCCTTCGGAGGCAGCCACTCTGAGAGCTGGTTTATGCCTGTGAATGAAAACAGCTTTCCAGACTGGGAGCGGACTAAGTTGGACCTACCCCTGCAGTGTTATAACTGGACATTAACTCTGGGGAACAAATGGAAGACATTTTTTGAGACAGTACACATCTACCTGAGAAGTCGCATCAAGTCCAATGGTCCCAATGGTAATGAGAGCATTTACTATGAACCTCTGGAGTTTATTGACCCTTCCCGGAACCTGGGCTATATGAAAATCAATAACATTCAAGTGTTTGGCTACAGCATGCACTTTGACCCTGAAGCAATTCGGGACCTGATTTTGCAGCTGGACTACCCCTATACTCAGGGATCCCAGGATTCAGCACTTTTGCAACTACTAGAGATCAGAGACCGTGTAAATAAACTCTCCCCACCTGGTCAGCGTCGTCTAGATCTTTTCTCTTGCTTGCTTCGTCATAGACTCAAGCTGTCTACTAGTGAGGTGGTGAGGATCCAATCTGCTCTGCAGGCGTTTAATGCCAAATTGCCAAACACAATGGATTATGACACGACCAAATTATGTAGTTAA MADGGEGEDEIQFLRTDDEVVLQCTATIHKEQQKLCLAAEGFGNRLCFLESTSNSKNVPPDLSICTFVLEQSLSVRALQEMLANTVEKSEGQVDVEKWKFMMKTAQGGGHRTLLYGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTIHPASKQRSEGEKVRVGDDLILVSVSSERYLHLSYGNGSLHVDAAFQQTLWSVAPISSGSEAAQGYLIGGDVLRLLHGHMDECLTVPSGEHGEEQRRTVHYEGGAVSVHARSLWRLETLRVAWSGSHIRWGQPFRLRHVTTGKYLSLMEDKNLLLMDKEKADVKSTAFTFRSSKEKLDVGVRKEVDGMGTSEIKYGDSVCYIQHVDTGLWLTYQSVDVKSVRMGSIQRKAIMHHEGHMDDGISLSRSQHEESRTARVIRSTVFLFNRFIRGLDALSKKAKASTVDLPIESVSLSLQDLIGYFHPPDEHLEHEDKQNRLRALKNRQNLFQEEGMINLVLECIDRLHVYSSAAHFADVAGREAGESWKSILNSLYELLAALIRGNRKNCAQFSGSLDWLISRLERLEASSGILEVLHCVLVESPEALNIIKEGHIKSIISLLDKHGRNHKVLDVLCSLCVCHGVAVRSNQHLICDNLLPGRDLLLQTRLVNHVSSMRPNIFLGVSEGSAQYKKWYYELMVDHTEPFVTAEATHLRVGWASTEGYSPYPGGGEEWGGNGVGDDLFSYGFDGLHLWSGCIARTVSSPNQHLLRTDDVISCCLDLSAPSISFRINGQPVQGMFENFNIDGLFFPVVSFSAGIKVRFLLGGRHGEFKFLPPPGYAPCYEAVLPKEKLKVEHSREYKQERTYTRDLLGPTVSLTQAAFTPIPVDTSQIVLPPHLERIREKLAENIHELWVMNKIELGWQYGPVRDDNKRQHPCLVEFSKLPEQERNYNLQMSLETLKTLLALGCHVGISDEHAEDKVKKMKLPKNYQLTSGYKPAPMDLSFIKLTPSQEAMVDKLAENAHNVWARDRIRQGWTYGIQQDVKNRRNPRLVPYTLLDDRTKKSNKDSLREAVRTLLGYGYNLEAPDQDHAARAEVCSGTGERFRIFRAEKTYAVKAGRWYFEFETVTAGDMRVGWSRPGCQPDQELGSDERAFAFDGFKAQRWHQGNEHYGRSWQAGDVVGCMVDMNEHTMMFTLNGEILLDDSGSELAFKDFDVGDDEFKLFMKRLPMNYFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPRQRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDASACLTCAPDNRTRCGTCNTGYMLSQGLCKPEVAESTDHYIGFETDLQDLEMKYLLQKTDRRIEVHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVLAVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYLRSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDYPYTQGSQDSALLQLLEIRDRVNKLSPPGQRRLDLFSCLLRHRLKLSTSEVVRIQSALQAFNAKLPNTMDYDTTKLCS* FALSE TRUE hsa-mir-4428 chr1:237471119-237471191:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28202 PAN3::PRSS53 ENSG00000152520.14::ENSG00000151006.8 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 149 TRUE 64 PAN3 ENSG00000152520.14 protein_coding + + chr13:28138506-28295335:+ chr13:28239696:+ chr13:28712643-28869472:+ chr13:28813833:+ PRSS53 ENSG00000151006.8 protein_coding - - chr16:31083437-31089628:- chr16:31086491:- chr16:31094758-31100949:- chr16:31097812:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr13--chr16] 9 17 9 7.67 INCL_NON_REF_SPLICE YES_LDAS 0.1901 GT 1.9656 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN PAB-dependent poly(A)-specific ribonuclease subunit 3 Other PAN3 Q58A45 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28203 TMEM50A::RHD ENSG00000183726.11::ENSG00000187010.21 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 94 FALSE NA FALSE NA TMEM50A ENSG00000183726.11 protein_coding + + chr1:25338317-25362361:+ chr1:25356853:+ chr1:25664808-25688852:+ chr1:25683344:+ RHD ENSG00000187010.21 protein_coding + + chr1:25272393-25330445:+ chr1:25284573:+ chr1:25598884-25656936:+ chr1:25611064:+ chr1:25358993,chr1:25358994 chr1:25279014,chr1:25279012 NA NA chr1:25685484,chr1:25685485 chr1:25605505,chr1:25605503 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame UPF0220|8-156|1.5e-53^zf-LITAF-like|9-13|1.7^zf-LITAF-like|19-60|9.8e-05^zf-LITAF-like|91-114|0.12 Ammonium_transp-PARTIAL|~149-349|1.5e-55^SLATT_3|230-275|0.11 ["DEEPEST2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.01Mb];LOCAL_REARRANGEMENT:+:[7472] 8 3 8 3 ONLY_REF_SPLICE YES_LDAS 0.1254 GT 1.5546 AG 1.9899 ENST00000374358.5 1-428 ENST00000342055.9 149-1482 chr1|+|[0]25340487-25340579[2]|[0]25342961-25343073[1]|[2]25351626-25351693[0]|[1]25352882-25352974[0]|[1]25356793-25356853[1]<==>chr1|+|[1]25284573-25284759[1]|[2]25290641-25290791[2]|[0]25300946-25301093[0]|[1]25301520-25301686[2]|[0]25303322-25303459[2]|[0]25306596-25306729[1]|[2]25307647-25307816[0]|[1]25328898-25329136[2] atgtctggatttctagagggcttgagatgctcagaatgcattgactggggggaaaagcgcaatactattgcttccattgctgctggtgtactattttttacaggctggtggattatcatagatgcagctgttatttatcccaccatgaaagatttcaaccactcataccatgcctgtggtgttatagcaaccatagccttcctaatgattaatgcagtatcgaatggacaagtccgaggtgatagttacagtgaaggttgtctgggtcaaacaggtgctcgcatttggcttttcgttggtttcatgttggcctttggatctctgattgcatctatgtggattctttttggaggttatgttgctaaagaaaaagacatagtataccctggaattgctgtatttttccagaatgccttcatcttttttggTTGGCCAAGATCTGACCGTGATGGCGGCCATTGGCTTGGGCTTCCTCACCTCGAGTTTCCGGAGACACAGCTGGAGCAGTGTGGCCTTCAACCTCTTCATGCTGGCGCTTGGTGTGCAGTGGGCAATCCTGCTGGACGGCTTCCTGAGCCAGTTCCCTTCTGGGAAGGTGGTCATCACACTGTTCAGTATTCGGCTGGCCACCATGAGTGCTTTGTCGGTGCTGATCTCAGTGGATGCTGTCTTGGGGAAGGTCAACTTGGCGCAGTTGGTGGTGATGGTGCTGGTGGAGGTGACAGCTTTAGGCAACCTGAGGATGGTCATCAGTAATATCTTCAACACAGACTACCACATGAACATGATGCACATCTACGTGTTCGCAGCCTATTTTGGGCTGTCTGTGGCCTGGTGCCTGCCAAAGCCTCTACCCGAGGGAACGGAGGATAAAGATCAGACAGCAACGATACCCAGTTTGTCTGCCATGCTGGGCGCCCTCTTCTTGTGGATGTTCTGGCCAAGTTTCAACTCTGCTCTGCTGAGAAGTCCAATCGAAAGGAAGAATGCCGTGTTCAACACCTACTATGCTGTAGCAGTCAGCGTGGTGACAGCCATCTCAGGGTCATCCTTGGCTCACCCCCAAGGGAAGATCAGCAAGACTTATGTGCACAGTGCGGTGTTGGCAGGAGGCGTGGCTGTGGGTACCTCGTGTCACCTGATCCCTTCTCCGTGGCTTGCCATGGTGCTGGGTCTTGTGGCTGGGCTGATCTCCGTCGGGGGAGCCAAGTACCTGCCGGGGTGTTGTAACCGAGTGCTGGGGATTCCCCACAGCTCCATCATGGGCTACAACTTCAGCTTGCTGGGTCTGCTTGGAGAGATCATCTACATTGTGCTGCTGGTGCTTGATACCGTCGGAGCCGGCAATGGCATGTCACTCGGCTGGAACCTGGCTGTAAAAATGGCTGAAGCAGGTGATGAGGAGCTGATGCGTTTGGACGTGTCTCAGAGAAATCATGGAGGCGCTGCGGTTCCTACCGGTTCTTGGATGCCTTCTACAGAGACAACCATAGCCCCAAATTATAGGGATCACATATCAGTGGTTTCCTCATTTGGCTGTTGGATTTTAAGCAAAAGCATCCAAGAAAAACAAGGCCTGTTCAAAAACAAGACAACTTCCTCTCACTGTTGCCTGCATTTGTACGTGAGAAACGCTCATGACAGCAAAGTCTCCAATGTTCGCGCAGGCACTGGAGTCAGAGAAAATGGAGTTGAATCCTTTCTCTGCCACTCTTTGAGGAGAATCTCACCATTTATTATGCACTGTAGAATACAACAATAA MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIFFGWPRSDRDGGHWLGLPHLEFPETQLEQCGLQPLHAGAWCAVGNPAGRLPEPVPFWEGGHHTVQYSAGHHECFVGADLSGCCLGEGQLGAVGGDGAGGGDSFRQPEDGHQ*YLQHRLPHEHDAHLRVRSLFWAVCGLVPAKASTRGNGG*RSDSNDTQFVCHAGRPLLVDVLAKFQLCSAEKSNRKEECRVQHLLCCSSQRGDSHLRVILGSPPREDQQDLCAQCGVGRRRGCGYLVSPDPFSVACHGAGSCGWADLRRGSQVPAGVL*PSAGDSPQLHHGLQLQLAGSAWRDHLHCAAGA*YRRSRQWHVTRLEPGCKNG*SR**GADAFGRVSEKSWRRCGSYRFLDAFYRDNHSPKL*GSHISGFLIWLLDFKQKHPRKTRPVQKQDNFLSLLPAFVREKRS*QQSLQCSRRHWSQRKWS*ILSLPLFEENLTIYYAL*NTTI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28205 CDC6::ENSG00000279668 ENSG00000094804.12::ENSG00000279668.4 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40291668:+ chr17:38444131-38460909:+ chr17:38447920:+ ENSG00000279668 ENSG00000279668.4 lncRNA - - chr17:33827699-34079100:- chr17:33828481:- chr17:32154718-32406119:- chr17:32155500:- chr17:40292671,chr17:40292672 chr17:33831931,chr17:33831930 NA NA chr17:38448923,chr17:38448924 chr17:32158950,chr17:32158949 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC6:Oncogene"] 8 7 8 7 ONLY_REF_SPLICE YES_LDAS 0.171 GT 1.9086 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28207 ADCY1::HECW1 ENSG00000164742.16::ENSG00000002746.15 NCIH2066 SRR8615253 SRR8652054 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 92 TRUE 152 TRUE 66 ADCY1 ENSG00000164742.16 protein_coding + + chr7:45574140-45723116:+ chr7:45622743:+ chr7:45613739-45762715:+ chr7:45662342:+ HECW1 ENSG00000002746.15 protein_coding + + chr7:43112629-43566001:+ chr7:43541163:+ chr7:43152228-43605600:+ chr7:43580762:+ chr7:45632245,chr7:45632245 chr7:43533605,chr7:43533602 NA NA chr7:45671844,chr7:45671844 chr7:43573204,chr7:43573201 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AC_N|40-283|4.7e-32^HNOBA|254-278|0.00032^Guanylate_cyc|294-476|2.5e-66^Adcy_cons_dom|519-609|1.4e-06^DUF6688|586-686|9.5e-06^DUF6594|599-663|8.9e-05^AC_N|601-686|6^DUF6594|730-767|2.2^DUF6688|736-810|1.8^HNOBA|817-848|0.025^Guanylate_cyc-PARTIAL|860-1020~|7.1e-69 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:2.01Mb] 2 14 2 7.16 ONLY_REF_SPLICE YES_LDAS 0.1045 GT 1.9656 AG 1.8323 ENST00000297323.12 1-1020 ENST00000453890.5 3918-4719 chr7|+|[0]45574544-45575182[2]|[0]45592759-45592908[2]|[0]45610379-45610497[1]|[2]45622632-45622743[2]<==>chr7|+|[2]43541163-43541261[1]|[2]43541869-43541998[2]|[0]43550445-43550591[2]|[0]43552222-43552336[0]|[1]43554592-43554790[1]|[2]43561815-43561926[2] atggcgggggcgccgcgcggcggaggcggcggcggaggcggcgcgggcgagcccgggggcgccgagcgggcggccgggacaagccgccggcgcgggctccgggcgtgcgacgaggagttcgcttgcccagagctggaggcgctgttccgcggctacacgctgcggctggagcaggcggccacgctgaaggcgctggccgttctcagcctgctggcgggcgcgctggcgctggccgagctgctgggcgcgccggggcccgcgcccggcctggccaagggctcacacccggtgcactgcgtcctcttcctggcgctgctcgtggtaaccaacgtccggtccctgcaggtgccccagctgcagcaggtcggccagctggcgctgctcttcagcctcaccttcgcgctgctctgctgtcctttcgcgctgggcggccccgcccggggttccgccggggccgctggggggccagcgaccgccgaacaaggggtttggcagctccttttggtcaccttcgtgtcctatgccttgctgcccgtgcgcagcctgctggccataggctttgggctcgtggtggctgcgtcgcacttgctggtcacagccaccttggtccccgccaagcgcccacgtctctggaggacgctcggtgccaatgccttgctcttcgtcggtgtgaacatgtatggggtctttgtgcggattctgactgagcgttcacagaggaaggcgttcctgcaggcccggagctgcattgaggaccgactgaggctggaggatgagaacgagaagcaggagcggctcctcatgagcctcctgccccggaacgttgccatggagatgaaggaggacttcctgaagccccctgagaggattttccacaagatttacatccagaggcacgacaatgtgagcatcctgtttgctgacatcgtgggtttcacgggcttggcatcccagtgcacagcccaggagctggtgaaactcctcaatgagctcttcggcaagttcgatgaattagccacgGTTCAGGTTTAGCGGTCGCATCCTGGGTCTGGCTCTGATCCATCAGTACCTTCTTGACGCTTTCTTCACGAGGCCCTTCTACAAGGCACTCCTGAGACTGCCCTGTGATTTGAGTGACCTGGAATATTTGGATGAGGAATTCCACCAGAGTTTGCAGTGGATGAAGGACAACAACATCACAGACATCTTAGACCTCACTTTCACTGTTAATGAAGAGGTTTTTGGACAGGTCACGGAAAGGGAGTTGAAGTCTGGAGGAGCCAACACACAGGTGACGGAGAAAAACAAGAAGGAGTACATCGAGCGCATGGTGAAGTGGCGGGTGGAGCGCGGCGTGGTACAGCAGACCGAGGCGCTGGTGCGCGGCTTCTACGAGGTTGTAGACTCGAGGCTGGTGTCCGTGTTTGATGCCAGGGAGCTGGAGCTGGTGATAGCTGGCACCGCGGAAATCGACCTAAATGACTGGCGGAATAACACTGAGTACCGGGGAGGTTACCACGATGGGCATCTTGTGATCCGCTGGTTCTGGGCTGCGGTGGAGCGCTTCAATAATGAGCAGAGGCTGAGATTACTGCAGTTTGTCACGGGAACATCCAGCGTGCCCTACGAAGGCTTCGCAGCCCTCCGTGGGAGCAATGGGCTTCGGCGCTTCTGCATAGAGAAATGGGGGAAAATTACTTCTCTCCCCAGGGCACACACATGCTTCAACCGACTGGATCTTCCACCGTATCCCTCGTACTCCATGTTGTATGAAAAGCTGTTAACAGCAGTAGAGGAAACCAGCACCTTTGGACTTGAGTGA MAGAPRGGGGGGGGAGEPGGAERAAGTSRRRGLRACDEEFACPELEALFRGYTLRLEQAATLKALAVLSLLAGALALAELLGAPGPAPGLAKGSHPVHCVLFLALLVVTNVRSLQVPQLQQVGQLALLFSLTFALLCCPFALGGPARGSAGAAGGPATAEQGVWQLLLVTFVSYALLPVRSLLAIGFGLVVAASHLLVTATLVPAKRPRLWRTLGANALLFVGVNMYGVFVRILTERSQRKAFLQARSCIEDRLRLEDENEKQERLLMSLLPRNVAMEMKEDFLKPPERIFHKIYIQRHDNVSILFADIVGFTGLASQCTAQELVKLLNELFGKFDELATVQV*RSHPGSGSDPSVPS*RFLHEALLQGTPETAL*FE*PGIFG*GIPPEFAVDEGQQHHRHLRPHFHC**RGFWTGHGKGVEVWRSQHTGDGEKQEGVHRAHGEVAGGARRGTADRGAGARLLRGCRLEAGVRV*CQGAGAGDSWHRGNRPK*LAE*H*VPGRLPRWASCDPLVLGCGGALQ**AEAEITAVCHGNIQRALRRLRSPPWEQWASALLHREMGENYFSPQGTHMLQPTGSSTVSLVLHVV*KAVNSSRGNQHLWT*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28209 RAI1::ERI3 ENSG00000108557.20::ENSG00000117419.16 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 97 FALSE NA FALSE NA RAI1 ENSG00000108557.20 protein_coding + + chr17:17681458-17811453:+ chr17:17681793:+ chr17:17584772-17714767:+ chr17:17585107:+ ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44308401:- chr1:44686742-44820932:- chr1:44774073:- chr17:17721613,chr17:17721614 chr1:44312841,chr1:44312840 NA NA chr17:17624927,chr17:17624928 chr1:44778513,chr1:44778512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr1] 22 1 22 1 ONLY_REF_SPLICE YES_LDAS 0.2436 GT 1.3996 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28211 AFAP1::ABLIM2 ENSG00000196526.11::ENSG00000163995.22 NCIH2052 SRR8615254 SRR8652053 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 98 FALSE NA FALSE NA AFAP1 ENSG00000196526.11 protein_coding - - chr4:7758714-7939926:- chr4:7939656:- chr4:7760441-7941653:- chr4:7941383:- ABLIM2 ENSG00000163995.22 protein_coding - - chr4:7965310-8158832:- chr4:7967103:- chr4:7967037-8160559:- chr4:7968830:- chr4:7932016,chr4:7932022 chr4:7977664,chr4:7977667 NA NA chr4:7933743,chr4:7933749 chr4:7979391,chr4:7979394 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr4:0.03Mb];LOCAL_REARRANGEMENT:-:[25384] 9 11 9 11 ONLY_REF_SPLICE YES_LDAS 0.2118 GT 1.7232 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Mesothelioma LUNG,BREAST,BREAST,MESOTHELIUM no_match 7941383|7941383|7941383,7776466,7857193,7840251 TRUE|TRUE|TRUE,FALSE,FALSE,FALSE 8010829|8009927|8009924,7994654,8099009,7986620 FALSE|FALSE|FALSE,FALSE,FALSE,FALSE YES,YES,YES,PARTIALLY 5UTR-CDS,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28218 CARS1::DCHS1 ENSG00000110619.18::ENSG00000166341.9 NCIH2030 SRR8615255 SRR8652052 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 103 FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3038050:- chr11:3022152-3078843:- chr11:3059280:- DCHS1 ENSG00000166341.9 protein_coding - - chr11:6621330-6655809:- chr11:6634306:- chr11:6642561-6677040:- chr11:6655537:- chr11:3037313,chr11:3037317 chr11:6639127,chr11:6639128 NA NA chr11:3058543,chr11:3058547 chr11:6660358,chr11:6660359 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame tRNA-synt_1e|127-535|2.3e-121^tRNA-synt_1|138-162|1.3^tRNA-synt_1g|144-179|0.00079^ROK|188-274|0.00017^DNA_pol_A_exoN|198-224|0.012^PcfK|237-304|0.0071^tRNA-synt_1c|307-347|0.00085^tRNA-synt_1|448-519|1.4e-06^tRNA-synt_1g|478-528|2.6e-07^DNA_pol_A_exoN|672-702|0.028^tRNA-synt_1|714-751|1.3^ATP-synt_E|728-767|0.0057^tRNA-synt_1c|733-771|0.15^PcfK|741-770|0.083 Cadherin-PARTIAL|~1798-1846|5.4e-20^Cadherin_3-PARTIAL|~1798-1800|0.00027^Cadherin_2-PARTIAL|~1798-1816|0.35^Cadherin_4-PARTIAL|~1798-1801|0.0053^Cadherin_3|1838-1885|0.52^Cadherin_4|1841-1906|0.0093^PylC-like_N|1842-1864|4.2^Cadherin_pro|1853-1879|0.36^RET_CLD1|1855-1880|2.4^Cadherin|1860-1950|4.9e-24^Cadherin_2|1900-1921|0.064^Cadherin_3|1941-1994|0.012^Cadherin_4|1945-1959|0.16^Cadherin|1983-2056|2.2e-07^PepSY|2012-2020|1.4^Cadherin|2074-2149|7.8e-15^Cadherin_4|2099-2125|0.4^Cadherin_3|2157-2200|0.82^Cadherin_4|2157-2230|0.014^Cadherin|2176-2267|1.5e-19^RET_CLD1|2213-2243|1.2^PepSY|2215-2230|1.1^Cadherin_2|2216-2238|0.1^Cadherin_3|2261-2294|0.044^Cadherin_4|2261-2305|0.035^Cadherin|2284-2367|1e-12^Cadherin_3|2360-2414|0.14^Cadherin_4|2360-2436|0.037^PylC-like_N|2361-2378|2.8^DUF3509|2378-2402|0.9^Cadherin|2382-2472|4.9e-14^Cadherin_3|2465-2526|0.048^Cadherin_4|2466-2513|0.066^DUF3509|2484-2508|0.056^Cadherin|2487-2593|9.3e-20^Cadherin_3|2585-2652|5.4e-05^Cadherin_4|2588-2658|2.8e-07^Cadherin_pro|2602-2684|0.07^RET_CLD1|2602-2669|0.054^Cadherin|2607-2696|8.3e-20^Cadherin_2|2640-2669|0.11^Cadherin_4|2691-2735|0.15^Cadherin_3|2692-2734|0.79^Cadherin|2712-2804|4.4e-18^Cadherin_3|2795-2850|0.098^Cadherin_4|2798-2853|0.48^Cadherin_pro|2813-2838|0.76^Cadherin|2818-2871|2.1e-09^RET_CLD1|2856-2870|1.8 ["CARS1:Oncogene"] 59 9 59 9 ONLY_REF_SPLICE YES_LDAS 0.643 GT 1.8892 AG 1.8256 ENST00000380525.9 1-801 ENST00000299441.5 1798-9897 chr11|-|[2]3038050-3038199[0]|[2]3039194-3039292[0]|[2]3039835-3039931[2]|[1]3040896-3040984[0]|[2]3042165-3042256[1]|[0]3047753-3048001[1]|[0]3057343-3057367[0]<==>chr11|-|[2]6621779-6624390[1]|[0]6624730-6624868[0]|[2]6625198-6625481[1]|[0]6625597-6625727[2]|[1]6625920-6626074[0]|[2]6626169-6626380[1]|[0]6626552-6626665[1]|[0]6626789-6627667[1]|[0]6628621-6628830[1]|[0]6629452-6629577[1]|[0]6629672-6629911[1]|[0]6629999-6630863[0]|[2]6631053-6631210[1]|[0]6631311-6631407[0]|[2]6631616-6631809[1]|[0]6632031-6633056[1]|[0]6633412-6633648[1]|[0]6633789-6634020[0]|[2]6634118-6634306[0] atggcagattcctccgggcagcaggctcctgactacaggtccattctgagcattagtgacgaggcagccagggcacaagccctgaacgagcacctcagcacgcgtagctatgtccaggggtactcactgtcccaggcagacgtggacgcgttcaggcagctctcggccccgcccgctgacccccagctcttccacgtggctcggtggttcaggcacatagaagcgctcctgggtagcccctgtggcaaaggccagccctgcaggctccaagcaagcaaaggccggcgtgtgcagccccagtggtcccctcctgctgggacccagccatgcagactccacctttacaacagcctcaccaggaacaaggaagtgttcatacctcaagatgggaaaaaggtgacgtggtattgctgtgggccaaccgtctatgacgcatctcacatggggcacgccaggtcctacatctcttttgatatcttgagaagagtgttgaaggattacttcaaatttgatgtcttttattgcatgaacattacggatattgatgacaagatcatcaagagggcccggcagaaccacctgttcgagcagtatcgggagaagaggcctgaagcggcacagctcttggaggatgttcaggccgccctgaagccattttcagtaaaattaaatgagaccacggatcccgataaaaagcagatgctcgaacggattcagcacgcagtgcagcttgccacagagccacttgagaaagctgtgcagtccagactcacgggagaggaagtcaacagctgtgtggagGTGACAGCCACAGACGCGGATAGTGGCCCATTTGGCCTCCTCTCCTATTCCTTGGGTGCTGGACTTGGGTCCTCCGGATCTCCCCCATTCCGCATTGATGCCCACAGCGGTGATGTGTGCACAACCCGGACCCTGGACCGTGACCAGGGGCCCTCAAGCTTTGACTTCACAGTGACAGCTGTGGATGGGGGAGGCCTCAAGTCCATGGTATATGTGAAGGTGTTTCTGTCAGACGAGAATGACAACCCTCCTCAGTTTTATCCACGGGAGTATGCTGCCAGTATAAGTGCCCAGAGTCCACCAGGCACAGCTGTGCTGAGGTTGCGTGCCCATGACCCTGACCAGGGATCCCATGGGCGACTCTCCTACCATATCCTGGCTGGCAACAGCCCCCCACTTTTTACCTTGGATGAGCAATCAGGGCTGTTGACAGTAGCCTGGCCCTTGGCCAGACGGGCCAATTCTGTGGTGCAGCTGGAGATCGGGGCTGAGGACGGAGGTGGCCTACAGGCAGAACCCAGTGCCCGAGTGGACATCAGCATTGTGCCTGGAACCCCCACACCACCCATATTTGAGCAACTACAGTATGTTTTTTCTGTGCCAGAGGATGTGGCACCAGGCACCAGTGTGGGCATAGTCCAGGCACACAACCCACCAGGTCGCTTGGCACCTGTGACCCTTTCCCTATCAGGTGGGGATCCCCGAGGACTCTTCTCCCTAGATGCGGTATCAGGACTGTTGCAAACACTTCGCCCTCTGGACCGGGAGCTACTGGGACCAGTGTTGGAGCTGGAGGTGCGAGCAGGCAGTGGAGTGCCCCCAGCTTTCGCTGTAGCTCGGGTGCGTGTGCTGCTGGATGATGTGAATGACAACTCCCCTGCCTTTCCTGCACCTGAAGACACGGTATTGCTACCACCAAACACTGCCCCAGGGACTCCCATCTATACACTGCGGGCTCTTGACCCCGACTCAGGTGTTAACAGTCGAGTCACCTTTACCCTGCTTGCTGGGGGTGGTGGAGCCTTCACCGTGGACCCCACCACAGGCCATGTACGGCTTATGAGGCCTCTGGGGCCCTCAGGAGGGCCAGCCCATGAGCTGGAGCTGGAGGCCCGGGATGGGGGCTCCCCACCACGCACCAGCCACTTTCGACTACGGGTGGTGGTACAGGATGTGGGAACCCGTGGGCTGGCTCCCCGATTCAACAGCCCTACCTACCGTGTGGACCTGCCCTCAGGCACCACTGCTGGAACTCAGGTCCTGCAAGTGCAGGCCCAAGCACCAGATGGGGGCCCTATCACCTATCACCTTGCAGCAGAGGGAGCAAGTAGCCCCTTTGGCCTGGAGCCACAGAGTGGGTGGCTATGGGTGCGGGCAGCACTAGACCGTGAGGCCCAGGAATTGTACATACTGAAGGTAATGGCAGTGTCTGGGTCCAAAGCTGAGTTGGGGCAGCAGACAGGCACAGCCACCGTGAGGGTCAGCATCCTCAACCAGAATGAACACAGTCCCCGCTTGTCTGAGGATCCCACCTTCCTGGCTGTGGCTGAGAACCAGCCCCCAGGGACCAGCGTGGGCCGAGTCTTTGCCACTGACCGAGACTCAGGACCCAATGGACGTCTGACCTACAGCCTGCAACAGCTGTCTGAAGACAGCAAGGCCTTCCGCATCCACCCCCAGACTGGAGAAGTGACCACACTCCAAACCCTGGACCGTGAGCAGCAGAGCAGCTATCAGCTCCTGGTGCAGGTGCAGGATGGAGGGAGCCCACCCCGCAGCACCACAGGCACTGTGCATGTTGCAGTGCTTGACCTCAACGACAACAGCCCCACGTTCCTGCAGGCTTCAGGAGCTGCTGGTGGGGGCCTCCCTATACAGGTACCAGACCGCGTGCCTCCGGGAACACTGGTGACGACTCTGCAGGCGAAGGATCCAGATGAGGGGGAGAATGGGACCATCTTGTACACGCTAACTGGTCCTGGCTCAGAGCTTTTCTCTCTGCACCCTCACTCAGGGGAGCTGCTCACTGCAGCTCCCCTGATCCGAGCAGAGCGGCCCCACTATGTGCTGACACTGAGTGCTCATGACCAAGGCAGCCCTCCTCGAAGTGCCAGCCTCCAGCTGCTGGTGCAGGTGCTTCCCTCAGCTCGCTTGGCCGAGCCGCCCCCAGATCTCGCAGAGCGGGACCCAGCGGCACCAGTGCCTGTCGTGCTGACGGTGACAGCAGCTGAGGGACTGCGGCCCGGCTCTCTGTTGGGCTCGGTGGCAGCGCCAGAGCCCGCGGGTGTGGGTGCACTCACCTACACACTGGTGGGCGGTGCCGATCCCGAGGGCACCTTCGCGCTGGATGCGGCCTCAGGGCGCTTGTACCTGGCGCGGCCCCTGGACTTCGAAGCTGGCCCGCCGTGGCGCGCGCTTACGGTACGCGCTGAGGGGCCGGGAGGCGCGGGCGCGCGGCTGCTGCGAGTGCAGGTGCAAGTGCAGGACGAGAATGAGCATGCGCCCGCCTTTGCGCGCGACCCGCTGGCGCTGGCGCTGCCAGAGAACCCGGAGCCCGGCGCAGCGCTGTACACTTTCCGCGCGTCGGACGCCGACGGCCCCGGCCCCAATAGCGACGTGCGCTACCGCCTGCTGCGCCAGGAGCCGCCCGTGCCGGCGCTTCGCCTGGACGCGCGCACCGGGGCGCTCAGCGCTCCGCGCGGCCTGGACCGAGAGACCACTCCCGCGCTGCTGCTGCTGGTGGAAGCCACCGACCGGCCCGCCAACGCCAGCCGCCGTCGTGCAGCGCGCGTTTCAGCGCGCGTCTTCGTCACGGATGAGAATGACAACGCGCCTGTCTTCGCCTCGCCGTCACGCGTGCGCCTCCCAGAGGACCAGCCGCCTGGGCCCGCGGCCCTGCACGTGGTAGCCCGGGACCCGGATCTGGGCGAGGCTGCACGCGTGTCCTATCGGCTGGCATCTGGCGGGGACGGCCACTTCCGGCTGCACTCAAGCACTGGAGCGCTGTCCGTGGTGCGGCCGTTGGACCGCGAACAACGAGCTGAGCACGTACTGACAGTGGTGGCCTCAGACCACGGCTCCCCGCCGCGCTCGGCCACGCAGGTCCTGACCGTCAGTGTCGCTGACGTCAACGACGAGGCGCCTACTTTCCAGCAGCAGGAGTACAGCGTCCTCTTGCGTGAGAACAACCCTCCTGGCACATCTCTGCTCACCCTGCGAGCAACCGACCCCGACGTGGGGGCCAACGGGCAAGTGACTTATGGAGGCGTCTCTAGCGAAAGCTTTTCTCTGGATCCTGACACTGGTGTTCTCACGACTCTTCGGGCCCTGGATCGAGAGGAACAGGAGGAGATCAACCTGACAGTGTATGCCCAGGACAGGGGCTCACCTCCTCAGTTAACGCATGTCACTGTTCGAGTGGCTGTGGAGGATGAGAATGACCATGCACCAACCTTTGGGAGTGCCCATCTCTCTCTGGAGGTGCCTGAGGGCCAGGACCCCCAGACCCTTACCATGCTTCGGGCCTCTGATCCAGATGTGGGAGCCAATGGGCAGTTGCAGTACCGCATCCTAGATGGGGACCCATCAGGAGCCTTTGTCCTAGACCTTGCTTCTGGAGAGTTTGGCACCATGCGGCCACTAGACAGAGAAGTGGAGCCAGCTTTCCAGCTGAGGATAGAGGCCCGGGATGGAGGCCAGCCAGCTCTCAGTGCCACGCTGCTTTTGACAGTGACAGTGCTGGATGCCAATGACCATGCTCCAGCCTTTCCTGTGCCTGCCTACTCGGTGGAGGTGCCGGAGGATGTGCCTGCAGGGACCCTGCTGCTGCAGCTACAGGCTCATGACCCTGATGCTGGAGCTAATGGCCATGTGACCTACTACCTGGGCGCCGGTACAGCAGGAGCCTTCCTGCTGGAGCCCAGCTCTGGAGAACTGCGCACAGCTGCAGCCTTGGACAGAGAACAGTGTCCCAGCTACACCTTTTCTGTGAGTGCAGTGGATGGTGCAGCTGCTGGGCCCCTAAGCACCACAGTGTCTGTCACCATCACGGTGCGCGATGTCAATGACCATGCACCCACCTTCCCCACCAGTCCTCTGCGCCTACGTCTGCCCCGCCCAGGCCCCAGCTTCAGTACCCCAACCCTGGCTCTGGCCACACTGAGAGCTGAAGATCGTGATGCTGGTGCCAATGCTTCCATTCTGTACCGGCTGGCAGGCACACCACCTCCTGGCACTACTGTGGACTCTTACACTGGTGAAATCCGCGTGGCCCGCTCTCCTGTAGCTCTAGGCCCCCGAGATCGTGTCCTCTTCATTGTGGCCACTGATCTTGGCCGTCCAGCTCGCTCTGCCACTGGTGTGATCATTGTTGGACTGCAGGGGGAAGCTGAGCGTGGACCCCGCTTTCCCCGGGCTAGCAGTGAGGCTACGATTCGTGAGAATGCGCCCCCAGGGACTCCTATTGTCTCCCCCAGGGCCGTCCATGCAGGAGGCACAAATGGACCCATCACCTACAGCATTCTCAGTGGGAATGAGAAAGGGACATTCTCCATCCAGCCTAGTACAGGTGCCATCACAGTTCGCTCAGCAGAGGGGCTAGACTTCGAGGTGAGTCCACGGCTGCGACTGGTGCTGCAGGCAGAGAGTGGAGGAGCCTTTGCCTTCACTGTGCTGACCCTGACCCTGCAAGATGCCAACGACAATGCTCCCCGTTTCCTGCGGCCCCATTATGTGGCCTTCCTTCCTGAGTCCCGGCCCTTGGAGGGGCCCCTGCTGCAGGTGGAGGCGGATGACCTGGATCAAGGCTCTGGAGGACAGATTTCCTACAGTCTGGCTGCATCCCAGCCGGCACGTGGATTGTTCCACGTAGACCCAACCACAGGCACTATCACTACCACAGCCATCCTGGACCGTGAGATCTGGGCTGAAACACGGTTGGTGCTGATGGCCACAGACAGAGGGAGCCCAGCCCTGGTGGGCTCAGCTACCTTGACGGTGATGGTCATCGACACCAATGACAATCGCCCCACCATCCCCCAACCCTGGGAGCTCCGAGTGTCAGAAGATGCGTTATTGGGCTCAGAGATTGCACAGGTAACAGGGAATGATGTGGACTCAGGACCCGTGCTGTGGTATGTGCTAAGCCCATCTGGGCCCCAGGATCCCTTCAGTGTTGGCCGCTATGGAGGCCGTGTCTCCCTCACGGGGCCCCTGGACTTTGAGCAGTGTGACCGCTACCAGCTGCAGCTGCTGGCACATGATGGGCCTCATGAGGGCCGTGCCAACCTCACAGTGCTTGTGGAGGATGTCAATGACAATGCACCTGCCTTCTCACAGAGCCTCTACCAGGTAATGCTGCTTGAGCACACACCCCCAGGCAGTGCCATTCTCTCCGTCTCTGCCACTGATCGGGACTCAGGTGCCAACGGTCACATTTCCTACCACCTGGCTTCCCCTGCCGATGGCTTCAGTGTTGACCCCAACAATGGGACCCTGTTCACAATAGTGGGAACAGTGGCCTTGGGCCATGACGGGTCAGGAGCAGTGGATGTGGTGCTGGAAGCACGAGACCACGGGGCTCCAGGCCGGGCAGCACGAGCCACAGTGCACGTGCAGCTGCAGGACCAGAACGACCACGCCCCGAGCTTCACATTGTCACACTACCGTGTGGCTGTGACTGAAGACCTGCCCCCTGGCTCCACTCTGCTCACCCTGGAGGCTACAGATGCTGATGGAAGCCGCAGCCATGCCGCTGTGGACTACAGCATCATCAGTGGCAACTGGGGCCGAGTCTTCCAGCTGGAACCCAGGCTGGCTGAGGCTGGGGAGAGTGCTGGACCAGGCCCCCGGGCACTGGGCTGCCTGGTGTTGCTTGAACCTCTAGACTTTGAAAGCCTGACACAGTACAATCTAACAGTGGCTGCAGCTGACCGTGGGCAGCCACCCCAAAGCTCAGTCGTGCCAGTCACTGTCACTGTACTAGATGTCAATGACAACCCACCTGTCTTTACCCGAGCATCCTACCGTGTGACAGTACCTGAGGACACACCTGTTGGAGCTGAGCTGCTGCATGTAGAGGCCTCTGACGCTGACCCTGGCCCTCATGGCCTCGTGCGTTTCACTGTCAGCTCAGGCGACCCATCAGGGCTCTTTGAGCTGGATGAGAGCTCAGGCACCTTGCGACTGGCCCATGCCCTGGACTGTGAGACCCAGGCTCGACATCAGCTTGTAGTACAGGCTGCTGACCCTGCTGGTGCACACTTTGCTTTGGCACCAGTGACAATTGAGGTCCAGGATGTGAATGATCATGGCCCAGCCTTCCCACTGAACTTACTCAGCACCAGCGTGGCCGAGAATCAGCCTCCAGGCACTCTCGTGACCACTCTGCATGCAATCGACGGGGATGCTGGGGCTTTTGGGAGGCTCCGTTACAGCCTGTTGGAGGCTGGGCCAGGACCTGAGGGCCGTGAGGCATTTGCACTGAACAGCTCAACAGGGGAGTTGCGTGCGCGAGTGCCCTTTGACTATGAGCACACAGAAAGCTTCCGGCTGCTGGTGGGTGCTGCTGATGCTGGGAATCTCTCAGCCTCTGTCACTGTGTCGGTGCTAGTGACTGGAGAGGATGAGTATGACCCTGTATTTCTGGCACCAGCTTTCCACTTCCAAGTGCCCGAAGGTGCCCGGCGTGGCCACAGCTTGGGTCACGTGCAGGCCACAGATGAGGATGGGGGTGCCGATGGCCTGGTTCTGTATTCCCTTGCCACCTCTTCCCCCTATTTTGGTATTAACCAGACTACAGGAGCCCTGTACCTGCGGGTGGACAGTCGGGCACCAGGCAGCGGAACAGCCACCTCTGGGGGTGGGGGCCGGACCCGGCGGGAAGCACCACGGGAGCTGAGGCTGGAGGTGATAGCACGGGGGCCTCTGCCTGGTTCCCGGAGTGCCACAGTGCCTGTGACCGTGGATATCACCCACACCGCACTGGGCCTGGCACCTGACCTCAACCTGCTATTAGTAGGGGCCGTGGCAGCCTCCTTGGGAGTTGTGGTGGTGCTTGCACTGGCAGCCCTGGTCCTAGGACTTGTTCGGGCCCGTAGCCGCAAGGCTGAGGCAGCCCCTGGCCCAATGTCACAGGCAGCACCCCTAGCCAGTGACTCACTGCAGAAACTGGGCCGGGAGCCACCTAGTCCACCACCCTCTGAGCACCTCTATCACCAGACTCTTCCCAGCTATGGTGGGCCAGGAGCTGGAGGACCCTACCCCCGTGGTGGCTCCTTGGACCCTTCACATTCAAGTGGCCGAGGATCAGCAGAGGCTGCAGAGGATGATGAGATCCGCATGATCAATGAGTTCCCCCGTGTGGCCAGTGTGGCCTCCTCTCTGGCTGCCCGTGGCCCTGACTCAGGCATCCAGCAGGATGCAGATGGTCTGAGTGACACATCCTGCGAACCACCTGCCCCTGACACCTGGTATAAGGGCCGAAAGGCAGGGCTGCTGCTGCCAGGTGCAGGAGCCACTCTCTACAGAGAGGAGGGGCCCCCAGCCACTGCCACAGCCTTCCTGGGGGGCTGTGGCCTGAGCCCTGCACCCACTGGGGACTATGGCTTCCCAGCAGATGGCAAGCCATGTGTGGCAGGTGCGCTGACAGCCATTGTGGCCGGCGAGGAGGAGCTCCGTGGCAGCTATAACTGGGACTACCTGCTGAGCTGGTGCCCTCAGTTCCAACCACTGGCCAGTGTCTTCACAGAGATCGCTCGGCTCAAGGATGAAGCTCGGCCATGTCCCCCAGCTCCCCGTATCGACCCACCACCCCTCATCACTGCCGTGGCCCACCCAGGAGCCAAGTCTGTGCCCCCCAAGCCAGCAAACACAGCTGCAGCCCGGGCCATCTTCCCACCAGCTTCTCACCGCTCCCCCATCAGCCATGAAGGCTCCCTGTCCTCAGCTGCCATGTCCCCCAGCTTCTCACCCTCTCTGTCTCCTCTGGCTGCTCGCTCACCCGTTGTCTCACCATTTGGGGTGGCCCAGGGTCCCTCAGCCTCAGCACTCAGCGCAGAGTCTGGCCTGGAGCCACCTGATGACACGGAGCTGCACATCTAG MADSSGQQAPDYRSILSISDEAARAQALNEHLSTRSYVQGYSLSQADVDAFRQLSAPPADPQLFHVARWFRHIEALLGSPCGKGQPCRLQASKGRRVQPQWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVTATDADSGPFGLLSYSLGAGLGSSGSPPFRIDAHSGDVCTTRTLDRDQGPSSFDFTVTAVDGGGLKSMVYVKVFLSDENDNPPQFYPREYAASISAQSPPGTAVLRLRAHDPDQGSHGRLSYHILAGNSPPLFTLDEQSGLLTVAWPLARRANSVVQLEIGAEDGGGLQAEPSARVDISIVPGTPTPPIFEQLQYVFSVPEDVAPGTSVGIVQAHNPPGRLAPVTLSLSGGDPRGLFSLDAVSGLLQTLRPLDRELLGPVLELEVRAGSGVPPAFAVARVRVLLDDVNDNSPAFPAPEDTVLLPPNTAPGTPIYTLRALDPDSGVNSRVTFTLLAGGGGAFTVDPTTGHVRLMRPLGPSGGPAHELELEARDGGSPPRTSHFRLRVVVQDVGTRGLAPRFNSPTYRVDLPSGTTAGTQVLQVQAQAPDGGPITYHLAAEGASSPFGLEPQSGWLWVRAALDREAQELYILKVMAVSGSKAELGQQTGTATVRVSILNQNEHSPRLSEDPTFLAVAENQPPGTSVGRVFATDRDSGPNGRLTYSLQQLSEDSKAFRIHPQTGEVTTLQTLDREQQSSYQLLVQVQDGGSPPRSTTGTVHVAVLDLNDNSPTFLQASGAAGGGLPIQVPDRVPPGTLVTTLQAKDPDEGENGTILYTLTGPGSELFSLHPHSGELLTAAPLIRAERPHYVLTLSAHDQGSPPRSASLQLLVQVLPSARLAEPPPDLAERDPAAPVPVVLTVTAAEGLRPGSLLGSVAAPEPAGVGALTYTLVGGADPEGTFALDAASGRLYLARPLDFEAGPPWRALTVRAEGPGGAGARLLRVQVQVQDENEHAPAFARDPLALALPENPEPGAALYTFRASDADGPGPNSDVRYRLLRQEPPVPALRLDARTGALSAPRGLDRETTPALLLLVEATDRPANASRRRAARVSARVFVTDENDNAPVFASPSRVRLPEDQPPGPAALHVVARDPDLGEAARVSYRLASGGDGHFRLHSSTGALSVVRPLDREQRAEHVLTVVASDHGSPPRSATQVLTVSVADVNDEAPTFQQQEYSVLLRENNPPGTSLLTLRATDPDVGANGQVTYGGVSSESFSLDPDTGVLTTLRALDREEQEEINLTVYAQDRGSPPQLTHVTVRVAVEDENDHAPTFGSAHLSLEVPEGQDPQTLTMLRASDPDVGANGQLQYRILDGDPSGAFVLDLASGEFGTMRPLDREVEPAFQLRIEARDGGQPALSATLLLTVTVLDANDHAPAFPVPAYSVEVPEDVPAGTLLLQLQAHDPDAGANGHVTYYLGAGTAGAFLLEPSSGELRTAAALDREQCPSYTFSVSAVDGAAAGPLSTTVSVTITVRDVNDHAPTFPTSPLRLRLPRPGPSFSTPTLALATLRAEDRDAGANASILYRLAGTPPPGTTVDSYTGEIRVARSPVALGPRDRVLFIVATDLGRPARSATGVIIVGLQGEAERGPRFPRASSEATIRENAPPGTPIVSPRAVHAGGTNGPITYSILSGNEKGTFSIQPSTGAITVRSAEGLDFEVSPRLRLVLQAESGGAFAFTVLTLTLQDANDNAPRFLRPHYVAFLPESRPLEGPLLQVEADDLDQGSGGQISYSLAASQPARGLFHVDPTTGTITTTAILDREIWAETRLVLMATDRGSPALVGSATLTVMVIDTNDNRPTIPQPWELRVSEDALLGSEIAQVTGNDVDSGPVLWYVLSPSGPQDPFSVGRYGGRVSLTGPLDFEQCDRYQLQLLAHDGPHEGRANLTVLVEDVNDNAPAFSQSLYQVMLLEHTPPGSAILSVSATDRDSGANGHISYHLASPADGFSVDPNNGTLFTIVGTVALGHDGSGAVDVVLEARDHGAPGRAARATVHVQLQDQNDHAPSFTLSHYRVAVTEDLPPGSTLLTLEATDADGSRSHAAVDYSIISGNWGRVFQLEPRLAEAGESAGPGPRALGCLVLLEPLDFESLTQYNLTVAAADRGQPPQSSVVPVTVTVLDVNDNPPVFTRASYRVTVPEDTPVGAELLHVEASDADPGPHGLVRFTVSSGDPSGLFELDESSGTLRLAHALDCETQARHQLVVQAADPAGAHFALAPVTIEVQDVNDHGPAFPLNLLSTSVAENQPPGTLVTTLHAIDGDAGAFGRLRYSLLEAGPGPEGREAFALNSSTGELRARVPFDYEHTESFRLLVGAADAGNLSASVTVSVLVTGEDEYDPVFLAPAFHFQVPEGARRGHSLGHVQATDEDGGADGLVLYSLATSSPYFGINQTTGALYLRVDSRAPGSGTATSGGGGRTRREAPRELRLEVIARGPLPGSRSATVPVTVDITHTALGLAPDLNLLLVGAVAASLGVVVVLALAALVLGLVRARSRKAEAAPGPMSQAAPLASDSLQKLGREPPSPPPSEHLYHQTLPSYGGPGAGGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEFPRVASVASSLAARGPDSGIQQDADGLSDTSCEPPAPDTWYKGRKAGLLLPGAGATLYREEGPPATATAFLGGCGLSPAPTGDYGFPADGKPCVAGALTAIVAGEEELRGSYNWDYLLSWCPQFQPLASVFTEIARLKDEARPCPPAPRIDPPPLITAVAHPGAKSVPPKPANTAAARAIFPPASHRSPISHEGSLSSAAMSPSFSPSLSPLAARSPVVSPFGVAQGPSASALSAESGLEPPDDTELHI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28229 BAZ1A::AKAP6 ENSG00000198604.11::ENSG00000151320.11 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 106 FALSE NA FALSE NA BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34810935:- chr14:35221937-35344853:- chr14:35280141:- AKAP6 ENSG00000151320.11 protein_coding + + chr14:32329298-32837684:+ chr14:32773678:+ chr14:32798504-33306890:+ chr14:33242884:+ chr14:34809192,chr14:34809194,chr14:34809194,chr14:34809197 chr14:32766217,chr14:32766178,chr14:32766215,chr14:32766215 NA NA chr14:35278398,chr14:35278400,chr14:35278400,chr14:35278403 chr14:33235423,chr14:33235384,chr14:33235421,chr14:33235421 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WAC_Acf1_DNA_bd|23-122|1.7e-36^WAC_Acf1_DNA_bd|318-363|5.5^DDT|424-483|4.3e-15^WHIM1|558-603|1.1e-15 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:1.92Mb] 23 14 23 14 ONLY_REF_SPLICE YES_LDAS 0.3946 GT 1.6402 AG 1.9086 ENST00000358716.8 1-638 ENST00000280979.9 3373-6960 chr14|-|[1]34810935-34811036[2]|[1]34826013-34826156[2]|[1]34862044-34862322[2]|[1]34874492-34874604[0]<==>chr14|+|[0]32773678-32773893[2]|[0]32821402-32824773[2] atgccgctgctacaccgaaagccgtttgtgagacagaagccgcccgcggacctgcggcccgacgaggaagttttctactgtaaagtcaccaacgagatcttccgccactacgatgacttttttgaacgaaccattctgtgcaacagccttgtgtggagttgtgctgtgacgggtagacctggactgacgtatcaggaagcacttgagtcagaaaaaaaagcaagacagaatcttcagagttttccagaaccactaattattccagttttatacttgaccagccttacccatcgttcgcgcttacatgaaatttgtgatgatatctttgcatatgtcaaggatcgatattttgtcgaagaaactgtggaagtcattaggaacaatggtgcaaggttgcagtgtaggattttggaagtcctccctccatcacatcaaaatggttttgctaatggacatgttaacagtgtggatggagaaactattatcatcagtgatagtgatgattcagaaacacaaagctgttcttttcaaaatgggaagaaaaaagatgcaattgatcccttactattcaagtataaagtgcaacccactaaaaaagaattacatgagtctgctattgttaaagcaacacaaatcagTCCCTCTGTCGTGAAATCAAGCAACGACGTCGAGGAGTTGCCTCCATTCTGCGACTATGCCAGCATCTTTTGGATGACCGGGAGACTTGCAATCTGAATGCAGACCACCAGCCCATGCAGCTGATCATTGTAAATCTTGAAAGAAGGTGGGAAGCCATTGTCATGCAAGCCGTCCAGTGGCAAACACGTCTACAAAAGAAGATGGGAAAGGAATCTGAGACTTTGAATGTGATTGATCCTGGCTTGATGGACCTAAATGGGATGAGTGAGGATGCCCTGGAATGGGATGAAATGGACATAAGTAACAAGTTAATTAGTTTGAATGAGGAATCAAATGACCTTGATCAAGAACTCCAACCTGTTATCCCTTCCTTGAAGCTTGGAGAGACAAGTAATGAGGACCCTGGTTATGACGAGGAGGCTGATAACCATGGGGGATCTCAGTATGCCTCAAATATTACTGCCCCCTCTAGTCCACACATTTACCAGGTGTACAGCCTCCACAATGTTGAACTCTATGAGGACAACCACATGCCATTTCTGAAAAACAATCCAAAGGTCACTGGCATGACACAGCCTAATGTTTTAACTAAGAGTCTCAGTAAAGACTCTTCATTTTCATCTACCAAATCTTTGCCAGATCTTCTAGGTGGTTCCAATTTGGTAAAGCCCTGCGCATGTCATGGAGGAGACATGAGCCAGAATTCAGGCAGTGAGAGTGGAATTGTCAGTGAAGGAGACACAGAAACCACTACCAACTCTGAAATGTGCTTGCTCAATGCAGTGGATGGGTCCCCAAGTAACCTTGAAACTGAACATCTGGACCCACAAATGGGAGATGCAGTTAACGTGTTAAAGCAAAAATTTACAGATGAGGGGGAAAGCATTAAGCTTCCAAATAGCTCTCAGTCGTCCATTTCACCAGTGGGTTGTGTAAATGGAAAAGTTGGAGATTTAAACAGTATTACCAAACATACCCCTGACTGTTTGGGAGAAGAATTACAAGGAAAACATGATGTGTTTACATTTTATGATTACTCATACCTCCAAGGCTCAAAACTCAAATTACCAATGATAATGAAACAGTCACAAAGCGAAAAAGCGCATGTGGAGGATCCCCTGCTTCGTGGTTTTTATTTTGATAAAAAATCATGCAAATCTAAACATCAGACTACAGAGTTACAACCAGATGTACCTCCCCATGAAAGGATTTTGGCAAGTGCATCTCATGAAATGGATCGCATTTCATATAAAAGTGGCAATATAGAAAAGACATTCACTGGCATGCAGAATGCCAAACAGCTCTCCCTTTTATCTCATAGTTCATCTATTGAGTCCCTTTCTCCAGGGGGTGATTTATTTGGATTGGGCATCTTTAAAAATGGCAGTGACAGCCTCCAGCGAAGCACTTCTTTAGAAAGTTGGTTGACTTCCTATAAAAGCAATGAAGATCTCTTTAGCTGTCACAGCTCTGGGGATATAAGCGTGAGCAGTGGCTCAGTTGGTGAACTAAGTAAAAGAACATTAGATCTCCTGAATCGTTTGGAGAATATCCAGAGCCCCTCAGAGCAAAAGATAAAACGAAGTGTTTCTGATATCACTCTTCAAAGCAGTTCCCAAAAGATGTCCTTTACTGGCCAGATGTCATTGGACATAGCATCTTCTATCAATGAAGACTCAGCGGCATCTCTAACAGAACTTAGCAGCAGTGACGAGCTCTCTCTTTGCTCAGAGGATATTGTGTTACACAAGAACAAGATCCCGGAATCGAATGCATCGTTCAGGAAGCGTCTGACTCGTTCAGTGGCTGATGAAAGCGATGTCAATGTCAGCATGATTGTTAATGTCTCTTGCACCTCTGCTTGCACTGATGATGAAGATGACAGCGACCTGCTCTCCAGCTCTACCCTTACCTTGACTGAAGAAGAGCTGTGCATCAAAGATGAGGATGACGACTCCAGTATTGCAACAGATGATGAAATTTATGAAGACTGCACCTTGATGTCAGGGCTAGACTACATAAAGAATGAATTACAGACCTGGATTAGGCCAAAATTGTCTTTGACAAGAGATAAGAAAAGGTGCAATGTCAGTGATGAGATGAAGGGCAGTAAAGATATAAGTAGCAGTGAGATGACCAATCCCTCTGATACTCTGAATATTGAGACCCTTCTAAATGGCTCTGTAAAACGTGTCTCTGAAAATAATGGAAATGGTAAGAATTCATCTCATACCCATGAGTTAGGGACAAAGCGTGAAAATAAGAAAACTATTTTCAAAGTTAATAAAGATCCATATGTGGCTGACATGGAAAATGGCAATATTGAAGGTATTCCAGAAAGGCAAAAGGGAAAACCGAATGTGACTTCAAAGGTATCAGAAAATCTTGGTTCACATGGGAAAGAGATTTCAGAGAGTGAGCATTGTAAGTGTAAAGCACTTATGGATAGTTTAGATGATTCAAATACTGCTGGCAAGGAATTTGTTTCCCAAGATGTTAGACATCTTCCAAAGAAATGTCCAAATCACCACCATTTTGAAAATCAAAGCACTGCCTCTACTCCCACTGAGAAGTCTTTCTCAGAACTGGCTTTAGAAACCAGGTTTAACAACAGACAAGACTCTGATGCACTGAAATCATCTGATGATGCACCGAGTATGGCTGGAAAATCTGCTGGTTGTTGCCTAGCACTTGAACAAAACGGAACAGAGGAAAATGCTTCTATCAGCAACATTTCCTGTTGCAACTGTGAGCCAGATGTTTTCCATCAAAAAGATGCCGAAGATTGTTCAGTACACAACTTTGTTAAGGAAATCATTGACATGGCTTCGACAGCCCTAAAAAGTAAATCTCAACCTGAAAACGAGGTGGCTGCTCCTACTTCATTAACTCAAATCAAGGAGAAAGTGTTGGAGCATTCTCACCGGCCCATCCAGCTGAGAAAAGGGGACTTTTATTCGTACTTATCTCTCTCATCTCATGACAGTGATTGTGGGGAGGTCACCAATTACATAGAAGAGAAAAGCAGCACTCCATTGCCACTAGACACCACTGACTCGGGCTTAGATGACAAGGAAGATATTGAATGCTTTTTTGAGGCCTGTGTTGAGGGTGACTCTGATGGAGAGGAGCCTTGTTTCTCTAGTGCTCCTCCAAATGAATCTGCAGTTCCCAGCGAAGCTGCAATGCCACTACAAGCAACAGCATGTTCTTCTGAGTTCAGTGATAGTTCTCTTTCAGCTGATGATGCAGATACAGTGGCTCTTTCAAGTCCTTCCTCTCAGGAAAGAGCTGAGGTTGGAAAGGAAGTGAATGGTTTGCCCCAAACTTCCAGTGGCTGTGCAGAAAACTTAGAGTTTACTCCTTCAAAGCTTGACAGTGAAAAGGAAAGTTCCGGAAAACCAGGTGAATCTGGAATGCCAGAAGAACATAATGCTGCTTCAGCCAAATCTAAAGTTCAAGACCTCTCCTTGAAGGCAAATCAGCCAACAGACAAGGCCGCATTGCATCCCAGCCCCAAAACTTTAACCTGTGAAGAAAATCTTCTAAACCTTCATGAAAAACGACATAGAAATATGCATAGGTAG MPLLHRKPFVRQKPPADLRPDEEVFYCKVTNEIFRHYDDFFERTILCNSLVWSCAVTGRPGLTYQEALESEKKARQNLQSFPEPLIIPVLYLTSLTHRSRLHEICDDIFAYVKDRYFVEETVEVIRNNGARLQCRILEVLPPSHQNGFANGHVNSVDGETIIISDSDDSETQSCSFQNGKKKDAIDPLLFKYKVQPTKKELHESAIVKATQISPSVVKSSNDVEELPPFCDYASIFWMTGRLAI*MQTTSPCS*SL*ILKEGGKPLSCKPSSGKHVYKRRWERNLRL*M*LILA*WT*MG*VRMPWNGMKWT*VTS*LV*MRNQMTLIKNSNLLSLP*SLERQVMRTLVMTRRLITMGDLSMPQILLPPLVHTFTRCTASTMLNSMRTTTCHF*KTIQRSLA*HSLMF*LRVSVKTLHFHLPNLCQIF*VVPIW*SPAHVMEET*ARIQAVRVELSVKETQKPLPTLKCACSMQWMGPQVTLKLNIWTHKWEMQLTC*SKNLQMRGKALSFQIALSRPFHQWVV*MEKLEI*TVLPNIPLTVWEKNYKENMMCLHFMITHTSKAQNSNYQ***NSHKAKKRMWRIPCFVVFILIKNHANLNIRLQSYNQMYLPMKGFWQVHLMKWIAFHIKVAI*KRHSLACRMPNSSPFYLIVHLLSPFLQGVIYLDWASLKMAVTASSEALL*KVG*LPIKAMKISLAVTALGI*A*AVAQLVN*VKEH*IS*IVWRISRAPQSKR*NEVFLISLFKAVPKRCPLLARCHWT*HLLSMKTQRHL*QNLAAVTSSLFAQRILCYTRTRSRNRMHRSGSV*LVQWLMKAMSMSA*LLMSLAPLLALMMKMTATCSPALPLP*LKKSCASKMRMTTPVLQQMMKFMKTAP*CQG*TT*RMNYRPGLGQNCL*QEIRKGAMSVMR*RAVKI*VAVR*PIPLIL*ILRPF*MAL*NVSLKIMEMVRIHLIPMS*GQSVKIRKLFSKLIKIHMWLTWKMAILKVFQKGKRENRM*LQRYQKILVHMGKRFQRVSIVSVKHLWIV*MIQILLARNLFPKMLDIFQRNVQITTILKIKALPLLPLRSLSQNWL*KPGLTTDKTLMH*NHLMMHRVWLENLLVVA*HLNKTEQRKMLLSATFPVATVSQMFSIKKMPKIVQYTTLLRKSLTWLRQP*KVNLNLKTRWLLLLH*LKSRRKCWSILTGPSS*EKGTFIRTYLSHLMTVIVGRSPIT*KRKAALHCH*TPLTRA*MTRKILNAFLRPVLRVTLMERSLVSLVLLQMNLQFPAKLQCHYKQQHVLLSSVIVLFQLMMQIQWLFQVLPLRKELRLERK*MVCPKLPVAVQKT*SLLLQSLTVKRKVPENQVNLECQKNIMLLQPNLKFKTSP*RQISQQTRPHCIPAPKL*PVKKIF*TFMKNDIEICIG FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 28234 STRN3::STXBP6 ENSG00000196792.12::ENSG00000168952.16 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:31025904:- chr14:31363005-31495607:- chr14:31495110:- STXBP6 ENSG00000168952.16 protein_coding - - chr14:24809454-25050147:- chr14:24974850:- chr14:25278660-25519353:- chr14:25444056:- chr14:31018299,chr14:31018366,chr14:31018343,chr14:31018334 chr14:25044584,chr14:25044584,chr14:25044584,chr14:25044584 NA NA chr14:31487505,chr14:31487572,chr14:31487549,chr14:31487540 chr14:25513790,chr14:25513790,chr14:25513790,chr14:25513790 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:5.84Mb] 12 14 12 13.38 ONLY_REF_SPLICE YES_LDAS 0.2707 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28238 CLIP2::CACNA2D2 ENSG00000106665.16::ENSG00000007402.12 NCIH2029 SRR8615256 SRR8652051 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 107 FALSE NA FALSE NA CLIP2 ENSG00000106665.16 protein_coding + + chr7:74289407-74405935:+ chr7:74397233:+ chr7:73703737-73820265:+ chr7:73811563:+ CACNA2D2 ENSG00000007402.12 protein_coding - - chr3:50362613-50504244:- chr3:50381126:- chr3:50400044-50541675:- chr3:50418557:- chr7:74399561,chr7:74399555,chr7:74399542 chr3:50381916,chr3:50381916,chr3:50381927 NA NA chr7:73813891,chr7:73813885,chr7:73813872 chr3:50419347,chr3:50419347,chr3:50419358 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CAP_GLY|81-145|9.6e-28^CAP_GLY|221-285|1.8e-30^Fungal_TACC|356-381|0.45^DUF948|385-432|0.0038^Fungal_TACC|393-441|0.32^Fungal_TACC|477-509|0.79^Fungal_TACC|553-612|2.1e-07^Sas10|563-601|5.2e-06^DUF948|570-621|0.0098^Fungal_TACC|612-632|0.46^Fungal_TACC|671-697|1.2^Sas10|685-706|2.8^Sas10|713-749|0.98^Fungal_TACC|733-760|0.026^Fungal_TACC|762-791|0.059^DUF948|820-884|0.0016^Fungal_TACC|833-859|0.42^Fungal_TACC|941-965|0.098^DUF948|991-1023|0.13 VGCC_alpha2|670-1114|1.3e-211^ESSS|774-808|0.004 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr3] 8 7 8 7 ONLY_REF_SPLICE YES_LDAS 0.16 GT 1.8892 AG 1.7465 ENST00000223398.11 1-2880 ENST00000423994.6 653-3462 chr7|+|[0]74317547-74317667[0]|[1]74338448-74339004[2]|[0]74353880-74354004[1]|[2]74356410-74356623[2]|[0]74357280-74357477[2]|[0]74360175-74360278[1]|[2]74364255-74364315[2]|[0]74372932-74373036[2]|[0]74375887-74376822[2]|[0]74380806-74380863[0]|[1]74386521-74386604[0]|[1]74389103-74389259[1]|[2]74397074-74397233[2]<==>chr3|-|[2]50364666-50364806[0]|[2]50364888-50364976[1]|[0]50365075-50365184[2]|[1]50365356-50365482[1]|[0]50365633-50365688[2]|[1]50365810-50365862[0]|[2]50366011-50366163[0]|[2]50366267-50366338[0]|[2]50366578-50366628[0]|[2]50366831-50366919[1]|[0]50367011-50367109[1]|[0]50367394-50367497[2]|[1]50367642-50367704[2]|[1]50367812-50367902[1]|[0]50368138-50368235[2]|[1]50370320-50370380[1]|[0]50373065-50373085[1]|[0]50374737-50374813[2]|[1]50375644-50375705[0]|[2]50375809-50375880[0]|[2]50375963-50376034[0]|[2]50376114-50376188[0]|[2]50377467-50377541[0]|[2]50377732-50377803[0]|[2]50378008-50378097[0]|[2]50378284-50378333[1]|[0]50378915-50378993[0]|[2]50379092-50379199[0]|[2]50379432-50379590[0]|[2]50379725-50379824[2]|[1]50379968-50380018[2]|[1]50380748-50380805[1]|[0]50380995-50381126[1] atgcagaagcccagcggcctgaagccccccggccgtggggggaagcactccagccccatgggccggacatctactgggtcagcttcatcctcggcggcggtggccgctagctccaaggaaggctccccactgcacaaacagtcatctggaccctcctcctccccggccgcagctgctgcccccgagaagccgggccccaaggcggcggaagtgggggatgacttcctgggggactttgtggtgggcgagcgggtgtgggtgaacggcgtgaagccaggcgtggtgcagtatctgggagagacgcagttcgcaccgggccagtgggctggcgtggtgctggacgacccggtgggcaagaatgatggcgcggtgggcggcgtgcgctacttcgagtgcccggccctccagggtatcttcacgcggccctccaagctgacccggcagcccacggccgagggctcggggagtgatgcccactccgtggagtcgctgactgcccagaacctgtcattgcattcgggcacggccacgcccccgctgaccagccgcgtcatccccctgcgggagagcgtcctcaacagctccgtgaagactggcaacgagtcgggatccaacctctcagacagcggctctgtgaagcggggcgaaaaggacctgcgcctgggggaccgcgtgctggttggcgggacgaagactggcgtggtgcggtacgtgggggagacagactttgccaagggcgagtggtgtggcgtggagctggacgagccccttgggaagaatgatggggcggtggcgggcaccaggtacttccagtgcccacccaagtttggtctcttcgcgcccatccacaaagtgatccgtatcggcttcccatctaccagcccagccaaggccaagaagaccaagcgtatggccatgggtgtgtcagcactgacccacagtcccagcagttcctccatcagctccgtcagctctgtggcctcctccgtggggggtcggcccagccgcagtggcctgctcacggagacctcttcacgctacgcccgcaagatctcgggcaccacggccttgcaggaggcactgaaggagaagcagcagcacattgagcagctgctggctgaacgagacctggaacgggctgaggtggccaaggccacaagccacatctgcgaggtggagaaggagattgccctgctcaaggcacagcatgagcagtatgttgcagaagccgaggagaagctgcagcgagcccggctgctcgtggagagcgtgcggaaagagaaggtggacctgtccaaccagctggaggaggagaggaggaaggtggaggatctgcagttccgcgtggaggaggagtccatcaccaagggagacctggagacccagacgcagctggagcacgcgcgcattggggagctggaacagagcctgctactggagaaggcgcaggccgagcggctgctccgagaattagcggacaacaggctgaccacagtggccgagaagtcgcgcgtgctgcagctggaggaggagctcaccctgcgccgaggtgaaatcgaggagctccagcagtgcctgttgcactcgggtcccccacctccggaccacccagacgccgccgagatcctgcggctacgggagcggctgctctcggccagcaaggaacaccagagggagagtggggtgctgcgggataaatacgagaaggccctgaaggcctaccaggcggaggtggacaagctccgcgcggccaacgagaagtacgcacaggaggtggcgggcctgaaggacaaggttcagcaggccaccagcgagaacatggggctaatggacaactggaaatccaagctggactcgctggcctcggaccaccagaagtccctggaggacctcaaagccaccctgaactcgggcccaggcgcccagcagaaggagatcggcgagctgaaggcagtgatggagggcatcaagatggagcaccagctggagctgggtaacttgcaggccaagcatgacctggagaccgccatgcacgtgaaggagaaggaggccctgcgagagaagctgcaggaggcccaggaggagctggctgggctgcagcggcactggcgggcccagctggaggtgcaagccagccagcaccggctggagctgcaggaggcccaggaccagcgccgggatgccgagctgcgtgtgcacgagctggaaaaactggacgtggagtaccggggccaggcgcaggctatcgagttcctcaaggagcagatctcgctggccgagaagaagatgttggactacgagcggctgcagcgggcagaagcccagggcaaacaggaggtcgagagtttgcgggagaagctcctggtggctgagaacagactccaggcggtcgaggccctgtgctcctcccagcacacccacatgattgagtcgaatgacatttcagaggagacgatcaggacgaaggaaactgtggagggcctgcaggacaagctgaacaagagggacaaagaggtgacagccttgacctcccagaccgagatgctcagggcccaagtaagtgcgctggagagcaagtgtaagtcaggcgagaagaaggtggacgccctcctgaaggagaagcggcgcctggaggcagagctggagaccgtgtcccggaagacccatgacgcctcgggccagctagtcctcatcagccaggagctgctgcggaaggagcggagcctgaacgaactgcgggtgttgctgctggaggccaatcgtcactccccagggccggagagggacctgagccgtgaggtacacaaggctgagtggcggatcaaggagcagaaactcaaggatgacatccggggcctgcgtgaaaagctgaccgggctgCCACTGTCATCCTCAATGAGCTCAACTGGACAGAGGCCCTGGAGAATGTGTTCATGGAAAACCGCAGACAAGACCCCACACTGCTGTGGCAGGTCTTCGGCAGCGCCACAGGAGTCACTCGCTACTACCCGGCCACCCCGTGGCGAGCCCCCAAGAAGATCGACCTGTACGATGTCCGAAGGAGACCCTGGTATATCCAGGGGGCCTCGTCACCCAAAGACATGGTCATCATCGTGGATGTGAGTGGCAGTGTGAGCGGCCTGACCCTGAAGCTGATGAAGACATCTGTCTGCGAGATGCTGGACACGCTGTCTGATGATGACTATGTGAATGTGGCCTCGTTCAACGAGAAGGCACAGCCTGTGTCATGCTTCACACACCTGGTGCAGGCCAATGTGCGCAACAAGAAGGTGTTCAAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCTACAAGGCCGGCTTTGAGTATGCCTTTGACCAGCTGCAGAACTCCAACATCACTCGGGCCAACTGCAACAAGATGATCATGATGTTCACGGATGGTGGTGAGGACCGCGTGCAGGACGTCTTTGAGAAGTACAATTGGCCAAACCGGACGGTGCGCGTGTTTACTTTCTCCGTGGGGCAGCATAACTATGACGTCACACCGCTGCAGTGGATGGCCTGTGCCAACAAAGGCTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACAGGAATATCTAGATGTGTTGGGCAGGCCCATGGTGCTGGCAGGCAAGGAGGCCAAGCAGGTGCAGTGGACCAACGTGTATGAGGATGCACTGGGACTGGGGTTGGTGGTAACAGGGACCCTCCCTGTTTTCAACCTGACACAGGATGGCCCTGGGGAAAAGAAGAACCAGCTGATCCTGGGCGTGATGGGCATTGACGTGGCTCTGAATGACATCAAGAGGCTGACCCCCAACTACACGCTTGGAGCCAACGGCTATGTGTTTGCCATTGACCTGAACGGCTACGTGTTGCTGCACCCCAATCTCAAGCCCCAGACCACCAACTTCCGGGAGCCTGTGACTCTGGACTTCCTGGATGCGGAGCTAGAGGATGAGAACAAGGAAGAGATCCGTCGGAGCATGATTGATGGCAACAAGGGCCACAAGCAGATCAGAACGTTGGTCAAGTCCCTGGATGAGAGGTACATAGATGAGGTGACACGGAACTACACCTGGGTGCCTATAAGGAGCACTAACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTTCTACCTCCAAGCCAATCTCAGTGACCAGATCCTGCAGGTCAAGTTGCCAATCAGCAAACTGAAGGATTTTGAGTTCCTGCTCCCCAGCAGCTTTGAGTCTGAAGGACACGTTTTCATTGCTCCCAGAGAGTACTGCAAGGACCTGAATGCCTCAGACAACAACACCGAGTTCCTGAAAAACTTTATTGAGCTCATGGAGAAAGTGACTCCAGACTCCAAGCAGTGCAACAACTTCCTTCTGCACAACCTGATCTTGGACACGGGCATCACGCAGCAGCTGGTAGAGCGTGTGTGGAGGGACCAGGATCTCAACACGTACAGCCTACTGGCCGTGTTCGCTGCCACAGACGGTGGCATCACCCGAGTCTTCCCCAACAAGGCAGCTGAGGACTGGACAGAGAACCCTGAGCCCTTCAATGCCAGCTTCTACCGCCGCAGCCTGGATAACCACGGTTATGTCTTCAAGCCCCCACACCAGGATGCCCTGTTAAGGCCGCTGGAGCTGGAGAATGACACTGTGGGCATCCTCGTCAGCACAGCTGTGGAGCTCAGCCTAGGCAGGCGCACACTGAGGCCAGCAGTGGTGGGCGTCAAGCTGGACCTAGAGGCTTGGGCTGAGAAGTTCAAGGTGCTAGCCAGCAACCGTACCCACCAAGACCAGCCTCAGAAGCAGTGCGGCCCCAACAGCCACTGTGAGATGGACTGCGAGGTTAACAATGAGGACTTACTCTGTGTCCTCATTGATGATGGAGGATTCCTGGTGCTGTCAAACCAGAACCATCAGTGGGACCAGGTGGGCAGGTTCTTCAGTGAGGTGGATGCCAACCTGATGCTGGCACTCTACAATAACTCCTTCTACACCCGCAAGGAGTCCTATGACTATCAGGCAGCCTGTGCCCCTCAGCCCCCTGGCAACCTGGGTGCTGCACCCCGGGGTGTCTTTGTGCCCACCGTTGCAGATTTCCTTAACCTGGCCTGGTGGACCTCTGCTGCCGCCTGGTCCCTGTTCCAGCAGCTTCTCTACGGCCTCATCTACCACAGCTGGTTCCAAGCAGACCCCGCGGAGGCCGAGGGGAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAGACCCAGTACTACTTCGGCTCGGTAAACGCCTCCTACAACGCCATCATCGACTGCGGAAACTGCTCCAGGCTGTTCCACGCGCAGAGACTGACCAACACCAATCTTCTCTTTGTGGTGGCCGAGAAGCCGCTGTGCAGCCAGTGCGAGGCTGGCCGGCTGCTGCAGAAGGAGACGCACTGCCCAGCGGACGGCCCGGAGCAGTGTGAGCTAGTGCAGAGACCGCGATACCGGAGAGGCCCGCACATCTGCTTCGACTACAACGCGACAGAAGATACCTCAGACTGTGGCCGCGGGGCCTCCTTCCCGCCGTCGCTGGGCGTCCTGGTCTCCCTGCAACTGCTGCTCCTCCTGGGCCTGCCGCCCCGGCCGCAGCCTCAAGTCCTCGTCCACGCCTCTCGCCGCCTCTGA MQKPSGLKPPGRGGKHSSPMGRTSTGSASSSAAVAASSKEGSPLHKQSSGPSSSPAAAAAPEKPGPKAAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQPTAEGSGSDAHSVESLTAQNLSLHSGTATPPLTSRVIPLRESVLNSSVKTGNESGSNLSDSGSVKRGEKDLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGFPSTSPAKAKKTKRMAMGVSALTHSPSSSSISSVSSVASSVGGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLPLSSSMSSTGQRPWRMCSWKTADKTPHCCGRSSAAPQESLATTRPPRGEPPRRSTCTMSEGDPGISRGPRHPKTWSSSWM*VAV*AA*P*S**RHLSARCWTRCLMMTM*MWPRSTRRHSLCHASHTWCRPMCATRRCSRKLCRAWWPRAPQATRPALSMPLTSCRTPTSLGPTATR*S*CSRMVVRTACRTSLRSTIGQTGRCACLLSPWGSITMTSHRCSGWPVPTKATILRSLPSEPSASTHRNI*MCWAGPWCWQARRPSRCSGPTCMRMHWDWGWW*QGPSLFST*HRMALGKRRTS*SWA*WALTWL*MTSRG*PPTTRLEPTAMCLPLT*TATCCCTPISSPRPPTSGSL*LWTSWMRS*RMRTRKRSVGA*LMATRATSRSERWSSPWMRGT*MR*HGTTPGCL*GALTTAWGWCSHPTAPSTSKPISVTRSCRSSCQSAN*RILSSCSPAALSLKDTFSLLPESTART*MPQTTTPSS*KTLLSSWRK*LQTPSSATTSFCTT*SWTRASRSSW*SVCGGTRISTRTAYWPCSLPQTVASPESSPTRQLRTGQRTLSPSMPASTAAAWITTVMSSSPHTRMPC*GRWSWRMTLWASSSAQLWSSA*AGAH*GQQWWASSWT*RLGLRSSRC*PATVPTKTSLRSSAAPTATVRWTARLTMRTYSVSSLMMEDSWCCQTRTISGTRWAGSSVRWMPT*CWHSTITPSTPARSPMTIRQPVPLSPLATWVLHPGVSLCPPLQISLTWPGGPLLPPGPCSSSFSTASSTTAGSKQTPRRPRGAPRRARAAAS*NRPSTTSAR*TPPTTPSSTAETAPGCSTRRD*PTPIFSLWWPRSRCAASARLAGCCRRRRTAQRTARSSVS*CRDRDTGEARTSASTTTRQKIPQTVAAGPPSRRRWASWSPCNCCSSWACRPGRSLKSSSTPLAAS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28240 PAK4::SLC24A4 ENSG00000130669.17::ENSG00000140090.18 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 108 FALSE NA FALSE NA PAK4 ENSG00000130669.17 protein_coding + + chr19:39125770-39182816:+ chr19:39125919:+ chr19:39616410-39673456:+ chr19:39616559:+ SLC24A4 ENSG00000140090.18 protein_coding + + chr14:92322581-92501481:+ chr14:92433912:+ chr14:92788925-92967825:+ chr14:92900256:+ chr19:39166001,chr19:39166002 chr14:92425799,chr14:92425797 NA NA chr19:39656641,chr19:39656642 chr14:92892143,chr14:92892141 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr14] 77 45 77 45 ONLY_REF_SPLICE YES_LDAS 1.4157 GT 1.5628 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 4 STE STE20 PAKB O96013 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28245 ZNF404::CACNA1A ENSG00000176222.10::ENSG00000141837.22 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF404 ENSG00000176222.10 protein_coding - - chr19:43872365-43901385:- chr19:43883956:- chr19:44376517-44405537:- chr19:44388108:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13519503:- chr19:13317256-13743839:- chr19:13630317:- chr19:43882491,chr19:43882498 chr19:13578559,chr19:13578563 NA NA chr19:44386643,chr19:44386650 chr19:13689373,chr19:13689377 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KRAB-PARTIAL|5-9~|8e-27 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:30.25Mb] 6 4 6 3.82 ONLY_REF_SPLICE YES_LDAS 0.1139 GT 1.8256 AG 1.7819 ENST00000587539.2 1-9 ENST00000592864.3 195-270 chr19|-|[2]43883956-43883964[0]<==>chr19|-|[2]13519428-13519503[2] atggcccggGAAGCTACCAGAGGATGTGCTTCACCCAAACAAGGGAGTAAACCAAGAAGAGGGAAACAGAGAACACTGGACTTAA MAREATRGCASPKQGSKPRRGKQRTLDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28246 ANO6::DDN-AS1 ENSG00000177119.17::ENSG00000257913.4 NCIH1975 SRR8615260 SRR8652050 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ANO6 ENSG00000177119.17 protein_coding + + chr12:45215987-45482280:+ chr12:45228273:+ chr12:45609770-45876063:+ chr12:45622056:+ DDN-AS1 ENSG00000257913.4 lncRNA + + chr12:48998367-49019241:+ chr12:49009309:+ chr12:49392150-49413024:+ chr12:49403092:+ chr12:45232893,chr12:45232892 chr12:49004271,chr12:49004267 NA NA chr12:45626676,chr12:45626675 chr12:49398054,chr12:49398050 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 5 7 5 4.24 ONLY_REF_SPLICE YES_LDAS 0.1072 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28247 RECQL::FGF23 ENSG00000004700.16::ENSG00000118972.3 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 110 FALSE NA FALSE NA RECQL ENSG00000004700.16 protein_coding - - chr12:21468910-21501669:- chr12:21499555:- chr12:21621844-21654603:- chr12:21652489:- FGF23 ENSG00000118972.3 protein_coding - - chr12:4368227-4379712:- chr12:4372697:- chr12:4477393-4488878:- chr12:4481863:- chr12:21486171,chr12:21486134,chr12:21486121,chr12:21486118,chr12:21486117,chr12:21486155,chr12:21486109,chr12:21486167,chr12:21486158,chr12:21486156,chr12:21486151,chr12:21486146,chr12:21486140,chr12:21486136 chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373783,chr12:4373764,chr12:4373783 NA NA chr12:21639105,chr12:21639068,chr12:21639055,chr12:21639052,chr12:21639051,chr12:21639089,chr12:21639043,chr12:21639101,chr12:21639092,chr12:21639090,chr12:21639085,chr12:21639080,chr12:21639074,chr12:21639070 chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482949,chr12:4482930,chr12:4482949 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Spectrin-PARTIAL|2-16~|0.00011^YabA-PARTIAL|3-16~|7.8e-05^UPF0184-PARTIAL|5-16~|0.00017^SKA2-PARTIAL|6-16~|8.7e-06^ADDB_N-PARTIAL|6-16~|0.0018^GPS2_interact-PARTIAL|7-16~|1.5e-05^Osmo_CC-PARTIAL|7-16~|0.0006^Snapin_Pallidin-PARTIAL|12-16~|1e-05 none ["RECQL:Oncogene"];["FGF23:FoundationOne_panel","FGF23:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:17.09Mb] 109 83 109 83 ONLY_REF_SPLICE YES_LDAS 2.6253 GT 1.8256 AG 1.9899 ENST00000396093.7 1-16 ENST00000237837.2 212-756 chr12|-|[0]21499555-21499570[0]<==>chr12|-|[2]4370343-4370783[0]|[2]4372594-4372697[1] atggcgtccgtttcagGTGCCCTGATGATCAGATCAGAGGATGCTGGCTTTGTGGTGATTACAGGTGTGATGAGCAGAAGATACCTCTGCATGGATTTCAGAGGCAACATTTTTGGATCACACTATTTCGACCCGGAGAACTGCAGGTTCCAACACCAGACGCTGGAAAACGGGTACGACGTCTACCACTCTCCTCAGTATCACTTCCTGGTCAGTCTGGGCCGGGCGAAGAGAGCCTTCCTGCCAGGCATGAACCCACCCCCGTACTCCCAGTTCCTGTCCCGGAGGAACGAGATCCCCCTAATTCACTTCAACACCCCCATACCACGGCGGCACACCCGGAGCGCCGAGGACGACTCGGAGCGGGACCCCCTGAACGTGCTGAAGCCCCGGGCCCGGATGACCCCGGCCCCGGCCTCCTGTTCACAGGAGCTCCCGAGCGCCGAGGACAACAGCCCGATGGCCAGTGACCCATTAGGGGTGGTCAGGGGCGGTCGAGTGAACACGCACGCTGGGGGAACGGGCCCGGAAGGCTGCCGCCCCTTCGCCAAGTTCATCTAG MASVSGALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGSHYFDPENCRFQHQTLENGYDVYHSPQYHFLVSLGRAKRAFLPGMNPPPYSQFLSRRNEIPLIHFNTPIPRRHTRSAEDDSERDPLNVLKPRARMTPAPASCSQELPSAEDNSPMASDPLGVVRGGRVNTHAGGTGPEGCRPFAKFI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28250 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4726 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85533331,chr1:85533412 chr1:85533543,chr1:85533414 NA NA chr1:85999014,chr1:85999095 chr1:85999226,chr1:85999097 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 33 77 33 12.4 ONLY_REF_SPLICE YES_LDAS 0.6207 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28251 MYH9::FOXRED2 ENSG00000100345.23::ENSG00000100350.16 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 113 FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36341370:- chr22:36677326-36784055:- chr22:36737415:- FOXRED2 ENSG00000100350.16 protein_coding - - chr22:36487190-36507221:- chr22:36498156:- chr22:36883237-36903268:- chr22:36894203:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Myosin_N|28-72|1.4e-15^CC2-LZ|56-92|1^Myosin_head-PARTIAL|83-490~|0^AAA_22|166-191|8.7e-05^ERM_helical|196-228|2.7 none ["MYH9:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.10Mb];LOCAL_REARRANGEMENT:-:[99172] 12 5 12 5 ONLY_REF_SPLICE YES_LDAS 0.2325 GT 1.7819 AG 1.8256 ENST00000216181.11 1-490 ENST00000688870.1 695-1533 chr22|-|[0]36341370-36341526[0]|[2]36348904-36349236[0]<==>chr22|-|[2]36490008-36490267[1]|[0]36493633-36493803[1]|[0]36495967-36496208[2]|[1]36497991-36498156[1] atggcacagcaagctgccgataagtatctctatgtggataaaaacttcatcaacaatccgctggcccaggccgactgggctgccaagaagctggtatgggtgccttccgacaagagtggctttgagccagccagcctcaaggaggaggtgggcgaagaggccatcgtggagctggtggagaatgggaagaaggtgaaggtgaacaaggatgacatccagaagatgaacccgcccaagttctccaaggtggaggacatggcagagctcacgtgcctcaacgaagcctcggtgctgcacaacctcaaggagcgttactactcagggctcatctacacctattcaggcctgttctgtgtggtcatcaatccttacaagaacctgcccatctactctgaagagattgtggaaatgtacaagggcaagaagaggcacgagatgccccctcacatctatgccatcacagacaccgcctacaggagtatgatgcaagTGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCACCACAGCGTCACCTGGCCCGCCACTGAGCTCCCCATCACACAGCTGACCAGCTCCATCGTGCGGCGCGTGAATGAGGCTTCTGGGCTCTACCAGATGTTCGGTGTGCTGGCCGATGTCATCCTGTTGAAGGAGAATTCCACGGCCTTTGAGTACCTGGAGGAGTTCCCCATACAGATGCTGGCCCAGCTGGAGACACTCACAGGGAGGAAGGCAAAGCACGGGCTCTTCGTCATCAACATGGAATATGGCAGAAATTTCTCTGGCCCCGACAAGGACGTCTTCTTTGATGACCGGTCTGTGGGGCACACAGAAGATGCCTGGCAGTCTAACTTTCTTCATCCTGTCATCTACTACTATAGATACCTCCCCACCGAACAGGAGGTGAGGTTCCGCCCTGCACACTGGCCCCTGCCTCGGCCCACGGCCATCCATCACATCGTGGAAGACTTCTTAACAGACTGGACTGCCCCGATCGGGCACATCCTACCTCTGAGGCGCTTCCTGGAGAACTGTTTGGACACCGATTTGCGAAGCTTCTATGCAGAGTCCTGCTTCCTGTTCGCCCTCACGCGCCAGAAGTTGCCACCCTTTTGCCAGCAGGGGTACCTGAGGATGCAGGGACTCGTGAGTACCGAGAGCCTTTGGCAGCACAGAGTGGAGAGCAGGCTCCTGCGGGACTATGCCCCCACAGGCAGGCGCCTGGAGGACAGCAGCCAGCAGCTTGGCGACCAAGAGCCACTAGGTTCCCCCCTGGCTCCAGGGCCTCTGGCTCAGTCCGTCGATAGCAACAAAGAGGAGCTCTGA MAQQAADKYLYVDKNFINNPLAQADWAAKKLVWVPSDKSGFEPASLKEEVGEEAIVELVENGKKVKVNKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQVRAVHRLLEHRHHSVTWPATELPITQLTSSIVRRVNEASGLYQMFGVLADVILLKENSTAFEYLEEFPIQMLAQLETLTGRKAKHGLFVINMEYGRNFSGPDKDVFFDDRSVGHTEDAWQSNFLHPVIYYYRYLPTEQEVRFRPAHWPLPRPTAIHHIVEDFLTDWTAPIGHILPLRRFLENCLDTDLRSFYAESCFLFALTRQKLPPFCQQGYLRMQGLVSTESLWQHRVESRLLRDYAPTGRRLEDSSQQLGDQEPLGSPLAPGPLAQSVDSNKEEL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 36783852,36737415 FALSE,TRUE 36886314,36889850 FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28253 CEP95::SMURF2 ENSG00000258890.8::ENSG00000108854.16 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 111 FALSE NA FALSE NA CEP95 ENSG00000258890.8 protein_coding + + chr17:64506865-64542461:+ chr17:64514358:+ chr17:62502983-62538579:+ chr17:62510476:+ SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64586170:- chr17:62538400-62658425:- chr17:62582288:- chr17:64514829,chr17:64514824 chr17:64586591,chr17:64586596 NA NA chr17:62510947,chr17:62510942 chr17:62582709,chr17:62582714 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HTH_16|29-44|0.55^CH|31-100|2e-05^DUF5745|49-107|1.5e-28^HTH_16|90-114|3.2e-05 HECT|444-747|5.9e-102 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];NEIGHBORS_OVERLAP:+:-:[166] 11 5 11 5 ONLY_REF_SPLICE YES_LDAS 0.2188 GT 1.8295 AG 1.9329 ENST00000581056.5 1-367 ENST00000262435.14 401-2247 chr17|+|[0]64507098-64507116[0]|[1]64508592-64508720[0]|[1]64510173-64510280[0]|[1]64514248-64514358[0]<==>chr17|-|[2]64545848-64545947[2]|[1]64546263-64546338[1]|[0]64547600-64547801[0]|[2]64551584-64551704[2]|[1]64554856-64554993[2]|[1]64555820-64555998[0]|[2]64557608-64557722[2]|[1]64561500-64561603[0]|[2]64562771-64562966[2]|[1]64571798-64571956[2]|[1]64578492-64578576[1]|[0]64580789-64580991[2]|[1]64583461-64583544[2]|[1]64586086-64586170[1] atggcaggctcggatgctgagtgggtaaccattgccaataaccttctttttaagtgtcatatacatctgagaatacatgaacttcaagactgtgatgctaatgtttttattgctctttatcagtctattttgggagaaaaggtaccagacctcatagttattcctaggagtcaagaagatgatgcacacaatgtacaagcagtaattgattcactggccttggactacttgcaggtcagcttgtctcacataacaggagaaaatatagtgaaaggagataaagaatctattaagaatctcctggaaatatttgatggtttgttggagtatcttacagaacgcatcagtgaaacatctcatgagaaaaTAAGTCTTCAGTCCAGAGACCGAATAGGCACAGGAGGACAAGTTGTGGACTGCAGTCGTTTATTTGATAACGATTTACCAGACGGCTGGGAAGAAAGGAGAACCGCCTCTGGAAGAATCCAGTATCTAAACCATATAACAAGAACTACGCAATGGGAGCGCCCAACACGACCGGCATCCGAATATTCTAGCCCTGGCAGACCTCTTAGCTGCTTTGTTGATGAGAACACTCCAATTAGTGGAACAAATGGTGCAACATGTGGACAGTCTTCAGATCCCAGGCTGGCAGAGAGGAGAGTCAGGTCACAACGACATAGAAATTACATGAGCAGAACACATTTACATACTCCTCCAGACCTACCAGAAGGCTATGAACAGAGGACAACGCAACAAGGCCAGGTGTATTTCTTACATACACAGACTGGTGTGAGCACATGGCATGATCCAAGAGTGCCCAGGGATCTTAGCAACATCAATTGTGAAGAGCTTGGTCCATTGCCTCCTGGATGGGAGATCCGTAATACGGCAACAGGCAGAGTTTATTTCGTTGACCATAACAACAGAACAACACAATTTACAGATCCTCGGCTGTCTGCTAACTTGCATTTAGTTTTAAATCGGCAGAACCAATTGAAAGACCAACAGCAACAGCAAGTGGTATCGTTATGTCCTGATGACACAGAATGCCTGACAGTCCCAAGGTACAAGCGAGACCTGGTTCAGAAACTAAAAATTTTGCGGCAAGAACTTTCCCAACAACAGCCTCAGGCAGGTCATTGCCGCATTGAGGTTTCCAGGGAAGAGATTTTTGAGGAATCATATCGACAGGTCATGAAAATGAGACCAAAAGATCTCTGGAAGCGATTAATGATAAAATTTCGTGGAGAAGAAGGCCTTGACTATGGAGGCGTTGCCAGGGAATGGTTGTATCTCTTGTCACATGAAATGTTGAATCCATACTATGGCCTCTTCCAGTATTCAAGAGATGATATTTATACATTGCAGATCAATCCTGATTCTGCAGTTAATCCGGAACATTTATCCTATTTCCACTTTGTTGGACGAATAATGGGAATGGCTGTGTTTCATGGACATTATATTGATGGTGGTTTCACATTGCCTTTTTATAAGCAATTGCTTGGGAAGTCAATTACCTTGGATGACATGGAGTTAGTAGATCCGGATCTTCACAACAGTTTAGTGTGGATACTTGAGAATGATATTACAGGTGTTTTGGACCATACCTTCTGTGTTGAACATAATGCATATGGTGAAATTATTCAGCATGAACTTAAACCAAATGGCAAAAGTATCCCTGTTAATGAAGAAAATAAAAAAGAATATGTCAGGCTCTATGTGAACTGGAGATTTTTACGAGGCATTGAGGCTCAATTCTTGGCTCTGCAGAAAGGATTTAATGAAGTAATTCCACAACATCTGCTGAAGACATTTGATGAGAAGGAGTTAGAGCTCATTATTTGTGGACTTGGAAAGATAGATGTTAATGACTGGAAGGTAAACACCCGGTTAAAACACTGTACACCAGACAGCAACATTGTCAAATGGTTCTGGAAAGCTGTGGAGTTTTTTGATGAAGAGCGACGAGCAAGATTGCTTCAGTTTGTGACAGGATCCTCTCGAGTGCCTCTGCAGGGCTTCAAAGCATTGCAAGGTGCTGCAGGCCCGAGACTCTTTACCATACACCAGATTGATGCCTGCACTAACAACCTGCCGAAAGCCCACACTTGCTTCAATCGAATAGACATTCCACCCTATGAAAGCTATGAAAAGCTATATGAAAAGCTGCTAACAGCCATTGAAGAAACATGTGGATTTGCTGTGGAATGA MAGSDAEWVTIANNLLFKCHIHLRIHELQDCDANVFIALYQSILGEKVPDLIVIPRSQEDDAHNVQAVIDSLALDYLQVSLSHITGENIVKGDKESIKNLLEIFDGLLEYLTERISETSHEKISLQSRDRIGTGGQVVDCSRLFDNDLPDGWEERRTASGRIQYLNHITRTTQWERPTRPASEYSSPGRPLSCFVDENTPISGTNGATCGQSSDPRLAERRVRSQRHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNRQNQLKDQQQQQVVSLCPDDTECLTVPRYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKHCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28255 TASOR2::NET1 ENSG00000108021.22::ENSG00000173848.19 NCIH196 SRR8615261 SRR8652049 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 112 FALSE NA FALSE NA TASOR2 ENSG00000108021.22 protein_coding + + chr10:5684731-5763779:+ chr10:5750027:+ chr10:5726694-5805742:+ chr10:5791990:+ NET1 ENSG00000173848.19 protein_coding + + chr10:5412557-5459056:+ chr10:5451830:+ chr10:5454520-5501019:+ chr10:5493793:+ chr10:5755426,chr10:5755424 chr10:5443511,chr10:5443506 NA NA chr10:5797389,chr10:5797387 chr10:5485474,chr10:5485469 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3715|103-248|3.2e-51^GARIL_Rab2_bd|355-427|3.4e-28^DUF3715|814-962|1.9e-48^GARIL_Rab2_bd|1041-1062|1.3^DUF3715|1118-1264|6e-16^GARIL_Rab2_bd|1316-1361|6.4e-05 RhoGEF-PARTIAL|~256-354|3.1e-42^PH_13|314-368|0.83^PH_13|387-502|1.5e-08^PH_5|394-453|1.3e-10^PH|397-500|4.4e-13^IQ_SEC7_PH|397-441|5.5e-05 ["NET1:Oncogene"] 10 10 10 10 ONLY_REF_SPLICE YES_LDAS 0.2734 GT 1.7465 AG 1.6729 ENST00000699051.1 1-7389 ENST00000355029.9 256-1791 chr10|+|[0]5692914-5692918[1]|[2]5709530-5709663[0]|[1]5712394-5712539[2]|[0]5712823-5712918[2]|[0]5714135-5714207[0]|[1]5717659-5717750[2]|[0]5720260-5720397[2]|[0]5720544-5720668[1]|[2]5720755-5720774[0]|[1]5720871-5720970[1]|[2]5723677-5723777[0]|[1]5724430-5724533[2]|[0]5726885-5726957[0]|[1]5727061-5727123[0]|[1]5730487-5731203[0]|[1]5735304-5735546[0]|[1]5739618-5740497[1]|[2]5742097-5742526[2]|[0]5746179-5750027[2]<==>chr10|+|[0]5451830-5451937[2]|[0]5452358-5452525[2]|[0]5452858-5452920[2]|[0]5453250-5453346[0]|[1]5453484-5453560[2]|[0]5454265-5454522[2]|[0]5454948-5455118[2]|[0]5456087-5456273[0]|[1]5456588-5456994[2] atgagcatttatgacattaacagagaacaggactatgtcaagaattctgagggtatacttggtgaaaatgaattaagaccaccctcccagctacattctctcttagagaagatcgagacagggtccctatcagaaaagatttttgagacagtgtccttgagttcagactctctcttccagagggcagtttcactcctccatacttcttacttggactcttcatctgagcatggttttcagtacagtcaagtgactttggtgaaaaatgacattttcttaaatgagtacaaaactttttaccaacaaaaaaaagcaagtagttatactcaggaagaacttcaagacacttacgggtttcttctgtttgatactgaaaagcaggcaaaattggtatgtcagtgtggactccgtgttggcagcagtgctgttaccactctgggtgatccagccaaaggtgtatacatttccaaatactccgactgtcttcattcaagaccatggtatcatgggaaatctggttatgttgtaatttttaatataattaagggaaaagtcaagtttgtgtctgagaattatacaactaactatactaagccatcttctggctatgattgccacgtgtctgaaaatactaacaaggtttctaacaagacgagtcattttcgtgcctttgaactgagtcagtattacttttacgaactttcaggcaacaccgttattgaacgacccagacagatctgtccttatgtaattgtagcttttcgatacagggaatctaaaactatggcaccaccagctcataaaagcatacttgaacgcagtgaaaatgttctcatgtctccatggaaagggaaattaattgttcaagaccgtatgctatgtgatatagctctttggtccacttacggtgcaatgattccaacacagctaccgcaggaactagattttaaatatgtaatgaaagtgtcttccttgaaaaaaagactaccagaggctgccttcagaaaacagaattacttggaggagaaagtctgttttcaagatttgtgcttcaatttgtatgaggtagaactgtcaaacagacaaggggaaaatatagataaattaacagaatgtattaaaaacaagcaattggcaatcatcaaatgcttagaagatcgagggtttttcattttacttacatcatcagccttactatcagaaccagattttggaggcaagcagatgggtctgcatgggttacatttatttcgttcacccctgtcaacaggggtgaaagatttgaaagttgaagatgacatctcaatgaaggtgatacctattttatctacccttaattgtgccctgctagaaacaaagaaatcacttcctgaagaaagaatccatccaaacacattagtaaagcgtcatttccaagaattgtacaaggcggacagaagcccttcattgagtgttgctcctcaggatagaatgaaagaccctacattcttggggaaactgcccagtggttttgacttgattcctccagctgaaaagtgcccttcagagtctttaactcagttgaactcttatttttcagaccctagtgcttacattttggaagtgtctactgctttggacttgctagcagagcatcctcagtctccttgtgtttcagacggaatttgtgatgctggattttccttagttatgactccagatcctgaatttcttgtctcagaggcagaagtgagaaaagaaactgaaacaaaaaaggattctgaagaaatgttgaaagcaaagaagagagtttttccattgagtccagcgtcaaatctgagagtgcagcctaagaggaaggccagcatgccccacatggtgcagagtaaaaaggtgaacttgtgccgcccctttcccaaaagaactgcttccagagcagacaacagctcggactctccaacaactcttaagttagttaaaggacagtttcctcagaaaagaaaaagaggtgcggaagtgctgactgcacagtttgtacagaaaaccaaattggataggaaaaaccaagaagctcctatttctaaagatgttccagtgccaacaaatgctaaaagggcaaggaaacaagagaaatctccagtcaaaactgttccaagggctaagccacctgtgaagaaatctccacaaaaacagagagtaaatatagtaaaaggcaatgagaaccccagaaacagaaagcagctacaacctgtcaaaggagaaactgcttcaaagcttcaatcagaaatttcaagaggttgtcaagaagatgggattagcataaatagtgttcaaccagaaaataccacagcggctcacaatgatcttcctgaaaactccatcgtcaactatgactcccaggccctaaatatgttagccgatctagcattaagctctgctacttcttccacaccagtatctgaggctagaaatcttcactgttcctctgaattgccacaaaatgatgttttgctctctaaagaaaattctttgcgaggtacatctgaccatgaatatcatagaggagttaaaactcaaaaaggtgaattactacctaacccatcttctgataggaagagtaattctggatcagacttaacagttagccaagatgaagaaagcttggttccttgtagtcaggcccctgctaaagcccagtcagcacttactgaggaaatgctagaatcttcagatgcaagccaaagctcttctgtttctgtggaacattcatatgccctgctccttacagaacattcaaagaaacatctacaggagagagagatactaagccctctgtttcccaggaatgggacaaaaagccctgaagcagcaaccccagtggggaaagtcatgccatttcggcatcagcccggccttttgcttcagcaaaagcctcctgacgaccccgtggtgaagcccaaggatcgaccaccgtctgcccgtgtgaaaaaatcttcttgctctcgtatagtgcttagctgtgatgactccgttaagatcactttcaaatgtgaaacagaatatgcattcagtttagacagcaaatataccaacaacccactggagaaaactgtagtaagagcattacatgggccctggaatactgatttgcctgataatgtggaagaagtgaagcttttacttcatatgtgggtagctctgttttacagcaatcagaacaaaatcatacgatcttcccgaaaggttgtagaacacagcaacccagcaaaatatgtgtctataaatagcacgttagaatcttgtgagctccgtgaaattgaggagtcccttggtttggaaaaatgttctgcagactctctgttggagactaacgaaatttccagggctcatgctgctgaagtatccttccgtgatcctaactgcttgcttcctttcattaaaacaccacttacccaaggcttggaactctgtgtacaaaatgaacagaaaaaaacttttgcaagagagtgtgatccagacacccaagaagaccagaatttcatctgttcttacaataatgaggtaactggggaagaagctaaacaagaatcattggagacttctaatcttgtgctttcgggtattggaagtacacaaactaatggaccttctgttcctagtgaagaagaaattgttcagccactggatagcacaagagtggcttcttacagtggcactgttactcaagccacattcaccaggacttacgatgggcctggcagtcagccagtgatatgtcagagctctgtgtacggcacccttgaaaacaaagtggatattcttgatgcagcagtgcaaacaaaaacaggtactttacaggaccttatccaacatggcagccccataaacaatgaatgtcacccttccttggaaagaaaggatgataatatggggtgtgcagtgattaacccggaaccaattactctcacctttgaaaaaaatgcacatgtaccaatacagacagaaggtgtaaatactgctgatgaacgtacaacctttaagaaggagttgattaagcaagtatcacctgctgcaagccttagacatcctgtatccacctcggaaaatgcacgaacacaaggcctgagggacattccctctctagtagttgcaggacagaagggcactaagtacctttgtgcctcgtcagtaggtggagagacacttgataaagcagtgtgttcattacagaaggagacgccccttccagtctctctaccatctgataaaacaatggtcatggaggcactatcattagctaaaagttctagtcatctatcacccagtgaagaagtgagatgcactcaggatttcctttcacagactcagagtctcctcggcctatcttcagaagggcttctagaactgacacaggttgaagtggactcatcatcagcctctaccaccttgggaaggcagtgttcacttaactgcatttcgtcaggatgccacacatcaggtgactctttagaactaaggaagaatcacaagaatggtccaaacactgaaaatatgaatttggaagcgtttgattcagtatttatcaaacaaacaagcctgtctgtgagtagagaggtcagcctagagttatcagaggaagattctgacattgacttagctctaacaatatcaccacctacaagtcccagagaagaaatgccagctggtgaaatagagcaatttgaggaggccccattctcaaatttagaacttcaggatgtagctgaggaaataggtgaaccggaagaggtggctctcacagaaagcagagaagtgagttctgctgacaatgtgtcagtatatccctcagtgtcagaagaaccagtagaaaataaggagagaaagggggataatttacaaccagttactttaatactttctaaagaaaattgcacccttgagattgcagaggaaattaatgtgacctctgattttccctttgattctgtaattgaagaagtatcaccagcgtctagtcctgaacctccagtaccagttaaagagacacgaccatatcaggctgtgactccatgcattttaaaacttcatggtacacagtgtgagaagagcaaccaaatctcccaatgtgagtcagaagacttaggcataacagaaaaagaaaatgtttttgttggtcctacccatccagtggggcaagataactttacccaggtacaacaaatgcaggtctctgccgaaatgcctctaatattaactgatcatccaggaagaacaggtagaccaacccttcctggtaaagtaactgaggaaattgtctcaagtgagcatgatgagggtttatctttctcaggaaaggtgcagtgctatggtagggagttaaaccagcctgcctcagctgccaaatgcacaggtgacttcagtccttctcctgaaaaactggtaaaatcaggaaatccattgcagccagttagtatagagaatagaaatttggacttaaaacatcttgtcttggagtccagtgaacctccatttggtcctagaaatgttattgaaaataagtctttgtctgacacattggtttccacaactgcaccaagtggtatagtgaatgtgtcagtaaaacagcagactagccctaaaagcagtcagaaccatctctttcccggtgatttgaaaacagatgaaggcatttatctgcaggtgaagtccttgacagctgcctcggttgatggagcttattctacacagggatgcatgtgctcagtggtccccacgctttgttcttcctcagacaatgctacattaacccattatgtaagaccaataaatgcagagccagtgtttcaagcacaggaaataccagcaggcagaatggccagtttgcttaagaatggtgagcctgaagctgagttacataaagaaaccacaggtccaggcactgctggccctcagtccaacaccacatcttctctaaaaggtgaacgcaaagccatccacacgctgcaagatgtgtcaacatgtgaaacaaaggagctattgaatgtcggggtttcctccctttgtgctggtccctaccaaaatacagcagacaccaaggaaaacctcagtaaagagcctttggcctcctttgtttcagaatcctttgatacttctgtttgtggaatagccacagagcacgtagaaattgagaacagtggggaggggctcagggctgaggctggttctgaaaccctaggcagagatggagaggtcggtgtgaattccgacatgcactatgaactctctggagattctgatctagacctgcttggtgattgtagaaatcccagactggatttggaggattcttatactttaagaggtagttacaccaggaaaaaagatgttcccacagatggctatgagtcgtcgttgaacttccacaacaacaaccaagaggactggggctgctctagctgggttccaggcatggagacgagcctccctcccgggcactggactgctgcggtaaagaaagaagagaagtgtgtgccgccttacgtccaaatccgagatctccacgggatcctcaggacttacgccaacttctctataacaaaagaactcaaagataccatgagaacttcacacggcctgaggaggcacccgagtttcagtgcaaactgtggcctgcccagctcctggacaagcacttggcaggtggcagacgacctcacccagaacactttagacctggagtatctgcgttttgcacataaactaaaacagaccataaagaatggggattctcagcattctgcctcctctgccaatgtctttccaaaggagtcaccaacccagatctccattggtgctttcccttcgacaaaaatctctgaggccccatttctgcatcctgcacctaggagcagaagcccccttctggtaacagttgtggagtcagatcccagaccacaggggcagcccaggagaggctacacagccagcagtctggacagctcttcctcttggagagagagatgtagtcataatagagatcttagaaattctcaaagaaatcacactgtttcattccacctcaacaaactgaaatacaacagtactgtgaaggaatctcggaatgatatttcacttattctcaatgagtatgctgaattcaacaaggtgatgaagaatagcaaccaattcattttccaagacaaagagctaaatgatgtttctggagaagccactgctcaagagatgtatctgcctttcccaggacggtcagcctcctatgaagacataatcatagacgtgtgcaccaatttgcacgtcaaactaagaagtgttgtgaaagaggcttgtaaaagtaccttcctgttctaccttgtcgaaacagaagacaaatcattctttgtaagaacaaagGAGCCAAGCAATAAAAGAGTTCGACCTCTGGCTCGTGTCACGTCCTTGGCAAATTTAATCTCTCCTGTAAGAAATGGAGCTGTCAGACGTTTTGGTCAAACAATACAGTCATTTACCCTTCGTGGTGACCACAGATCCCCAGCCTCTGCCCAGAAGTTTTCTAGCAGGTCAACAGTCCCAACACCCGCCAAGAGAAGGAGCAGTGCACTGTGGTCAGAGATGCTGGACATCACCATGAAGGAGTCTCTCACCACCAGGGAGATCAGACGGCAGGAGGCAATATATGAAATGTCCCGAGGTGAACAGGATTTAATTGAGGATCTCAAACTTGCAAGAAAGGCCTATCATGACCCCATGTTAAAGTTGTCCATCATGTCAGAAGAGGAACTCACACATATATTTGGTGATCTGGACTCTTACATACCTCTGCATGAAGATTTGTTGACAAGAATAGGAGAAGCAACCAAGCCTGATGGAACAGTGGAGCAGATTGGTCACATTCTCGTGAGCTGGTTACCGCGCTTGAATGCCTACAGAGGTTACTGTAGTAACCAGCTGGCAGCCAAAGCTCTTCTTGATCAAAAGAAACAGGATCCAAGAGTCCAAGACTTCCTCCAGCGATGTCTCGAGTCTCCCTTCAGTCGAAAACTAGATCTTTGGAGTTTCCTAGATATCCCTCGAAGTCGCCTAGTCAAATACCCTTTACTGTTAAAAGAAATTCTTAAACACACTCCAAAAGAGCACCCTGATGTTCAGCTTCTGGAGGATGCTATATTGATAATACAGGGAGTCCTCTCTGATATCAACTTGAAGAAAGGTGAATCCGAGTGCCAGTATTACATCGACAAGCTGGAGTACCTGGATGAAAAGCAGAGGGACCCCAGAATCGAAGCGAGCAAAGTGCTGCTGTGCCATGGGGAGCTGCGGAGCAAGAGTGGACATAAACTTTACATTTTCCTGTTTCAAGACATCTTGGTTCTGACTCGGCCCGTCACACGGAACGAACGGCACTCTTACCAGGTTTACCGGCAGCCAATCCCAGTCCAAGAGCTAGTCCTAGAAGACCTGCAGGATGGAGATGTGAGAATGGGAGGCTCCTTTCGAGGAGCTTTCAGTAACTCAGAGAAAGCTAAAAATATCTTTAGAATTCGCTTCCATGACCCCTCTCCAGCCCAGTCTCACACTCTGCAAGCCAATGACGTGTTCCACAAGCAGCAGTGGTTCAACTGTATTCGAGCGGCCATTGCCCCCTTCCAGTCGGCAGGCAGTCCACCTGAGCTGCAGGGCCTGCCGGAGCTGCACGAAGAGTGTGAGGGGAACCACCCCTCTGCGAGGAAACTCACAGCCCAGAGGAGGGCATCCACAGTTTCCAGTGTTACTCAGGTAGAAGTTGATGAAAACGCTTACAGATGTGGCTCTGGCATGCAGATGGCAGAGGACAGCAAGAGCTTAAAGACACACCAGACACAGCCCGGCATCCGAAGAGCGAGGGACAAAGCCCTTTCTGGTGGCAAACGGAAAGAGACTTTGGTGTAG MSIYDINREQDYVKNSEGILGENELRPPSQLHSLLEKIETGSLSEKIFETVSLSSDSLFQRAVSLLHTSYLDSSSEHGFQYSQVTLVKNDIFLNEYKTFYQQKKASSYTQEELQDTYGFLLFDTEKQAKLVCQCGLRVGSSAVTTLGDPAKGVYISKYSDCLHSRPWYHGKSGYVVIFNIIKGKVKFVSENYTTNYTKPSSGYDCHVSENTNKVSNKTSHFRAFELSQYYFYELSGNTVIERPRQICPYVIVAFRYRESKTMAPPAHKSILERSENVLMSPWKGKLIVQDRMLCDIALWSTYGAMIPTQLPQELDFKYVMKVSSLKKRLPEAAFRKQNYLEEKVCFQDLCFNLYEVELSNRQGENIDKLTECIKNKQLAIIKCLEDRGFFILLTSSALLSEPDFGGKQMGLHGLHLFRSPLSTGVKDLKVEDDISMKVIPILSTLNCALLETKKSLPEERIHPNTLVKRHFQELYKADRSPSLSVAPQDRMKDPTFLGKLPSGFDLIPPAEKCPSESLTQLNSYFSDPSAYILEVSTALDLLAEHPQSPCVSDGICDAGFSLVMTPDPEFLVSEAEVRKETETKKDSEEMLKAKKRVFPLSPASNLRVQPKRKASMPHMVQSKKVNLCRPFPKRTASRADNSSDSPTTLKLVKGQFPQKRKRGAEVLTAQFVQKTKLDRKNQEAPISKDVPVPTNAKRARKQEKSPVKTVPRAKPPVKKSPQKQRVNIVKGNENPRNRKQLQPVKGETASKLQSEISRGCQEDGISINSVQPENTTAAHNDLPENSIVNYDSQALNMLADLALSSATSSTPVSEARNLHCSSELPQNDVLLSKENSLRGTSDHEYHRGVKTQKGELLPNPSSDRKSNSGSDLTVSQDEESLVPCSQAPAKAQSALTEEMLESSDASQSSSVSVEHSYALLLTEHSKKHLQEREILSPLFPRNGTKSPEAATPVGKVMPFRHQPGLLLQQKPPDDPVVKPKDRPPSARVKKSSCSRIVLSCDDSVKITFKCETEYAFSLDSKYTNNPLEKTVVRALHGPWNTDLPDNVEEVKLLLHMWVALFYSNQNKIIRSSRKVVEHSNPAKYVSINSTLESCELREIEESLGLEKCSADSLLETNEISRAHAAEVSFRDPNCLLPFIKTPLTQGLELCVQNEQKKTFARECDPDTQEDQNFICSYNNEVTGEEAKQESLETSNLVLSGIGSTQTNGPSVPSEEEIVQPLDSTRVASYSGTVTQATFTRTYDGPGSQPVICQSSVYGTLENKVDILDAAVQTKTGTLQDLIQHGSPINNECHPSLERKDDNMGCAVINPEPITLTFEKNAHVPIQTEGVNTADERTTFKKELIKQVSPAASLRHPVSTSENARTQGLRDIPSLVVAGQKGTKYLCASSVGGETLDKAVCSLQKETPLPVSLPSDKTMVMEALSLAKSSSHLSPSEEVRCTQDFLSQTQSLLGLSSEGLLELTQVEVDSSSASTTLGRQCSLNCISSGCHTSGDSLELRKNHKNGPNTENMNLEAFDSVFIKQTSLSVSREVSLELSEEDSDIDLALTISPPTSPREEMPAGEIEQFEEAPFSNLELQDVAEEIGEPEEVALTESREVSSADNVSVYPSVSEEPVENKERKGDNLQPVTLILSKENCTLEIAEEINVTSDFPFDSVIEEVSPASSPEPPVPVKETRPYQAVTPCILKLHGTQCEKSNQISQCESEDLGITEKENVFVGPTHPVGQDNFTQVQQMQVSAEMPLILTDHPGRTGRPTLPGKVTEEIVSSEHDEGLSFSGKVQCYGRELNQPASAAKCTGDFSPSPEKLVKSGNPLQPVSIENRNLDLKHLVLESSEPPFGPRNVIENKSLSDTLVSTTAPSGIVNVSVKQQTSPKSSQNHLFPGDLKTDEGIYLQVKSLTAASVDGAYSTQGCMCSVVPTLCSSSDNATLTHYVRPINAEPVFQAQEIPAGRMASLLKNGEPEAELHKETTGPGTAGPQSNTTSSLKGERKAIHTLQDVSTCETKELLNVGVSSLCAGPYQNTADTKENLSKEPLASFVSESFDTSVCGIATEHVEIENSGEGLRAEAGSETLGRDGEVGVNSDMHYELSGDSDLDLLGDCRNPRLDLEDSYTLRGSYTRKKDVPTDGYESSLNFHNNNQEDWGCSSWVPGMETSLPPGHWTAAVKKEEKCVPPYVQIRDLHGILRTYANFSITKELKDTMRTSHGLRRHPSFSANCGLPSSWTSTWQVADDLTQNTLDLEYLRFAHKLKQTIKNGDSQHSASSANVFPKESPTQISIGAFPSTKISEAPFLHPAPRSRSPLLVTVVESDPRPQGQPRRGYTASSLDSSSSWRERCSHNRDLRNSQRNHTVSFHLNKLKYNSTVKESRNDISLILNEYAEFNKVMKNSNQFIFQDKELNDVSGEATAQEMYLPFPGRSASYEDIIIDVCTNLHVKLRSVVKEACKSTFLFYLVETEDKSFFVRTKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKFSSRSTVPTPAKRRSSALWSEMLDITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKLEYLDEKQRDPRIEASKVLLCHGELRSKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFSNSEKAKNIFRIRFHDPSPAQSHTLQANDVFHKQQWFNCIRAAIAPFQSAGSPPELQGLPELHEECEGNHPSARKLTAQRRASTVSSVTQVEVDENAYRCGSGMQMAEDSKSLKTHQTQPGIRRARDKALSGGKRKETLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28268 MBNL1::ENSG00000242536 ENSG00000152601.18::ENSG00000242536.2 CAL27 SRR8615267 SRR8639202 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 116 FALSE NA FALSE NA MBNL1 ENSG00000152601.18 protein_coding + + chr3:152243828-152465780:+ chr3:152269092:+ chr3:151961617-152183569:+ chr3:151986881:+ ENSG00000242536 ENSG00000242536.2 lncRNA - - chr3:157814822-158088997:- chr3:157895838:- chr3:157532611-157806786:- chr3:157613627:- chr3:152294003,chr3:152294005 chr3:157909604,chr3:157909604 NA NA chr3:152011792,chr3:152011794 chr3:157627393,chr3:157627393 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 148 135 148 135 ONLY_REF_SPLICE YES_LDAS 3.466 GT 1.3383 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28271 EIF3C::NMRAL1 ENSG00000184110.15::ENSG00000153406.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA EIF3C ENSG00000184110.15 protein_coding + + chr16:28688558-28735727:+ chr16:28715434:+ chr16:28699879-28747048:+ chr16:28726755:+ NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4481879:- chr16:4511692-4545764:- chr16:4531880:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["EIF3C:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:24.19Mb] 246 108 123 54 ONLY_REF_SPLICE YES_LDAS 2.2034 GT 1.5329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28272 PAGR1::CDH1 ENSG00000280789.2::ENSG00000039068.20 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 118 FALSE NA FALSE NA PAGR1 ENSG00000280789.2 protein_coding + + chr16:29816152-29822489:+ chr16:29817292:+ chr16:29827473-29833810:+ chr16:29828613:+ CDH1 ENSG00000039068.20 protein_coding + + chr16:68737292-68835537:+ chr16:68801670:+ chr16:68771195-68869440:+ chr16:68835573:+ chr16:29818030 chr16:68801612 NA NA chr16:29829351 chr16:68835515 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PAXIP1_C|86-218|1.4e-56 Cadherin-PARTIAL|~164-253|8.7e-19^RET_CLD1|205-227|1.8^Cadherin_2|205-226|0.0048^Cadherin_3|244-292|0.006^RET_CLD1|262-341|0.0023^Cadherin|268-366|5e-25^Cadherin_2|313-337|0.081^Cadherin_3|357-429|0.00014^Cadherin|380-478|1e-17^Cadherin_pro|430-452|0.45^Cadherin_3|469-498|0.42^Cadherin|493-581|1e-17^Gag_p6|497-513|0.0019^RET_CLD1|521-560|1.5e-05^Cadherin_2|526-553|0.0011^Cadherin|601-686|2.4e-12^TM_ErbB1|710-735|5.1e-05^CADH_Y-type_LIR|750-763|2.7^CADH_Y-type_LIR|818-877|2.2e-33^Gag_p6|822-827|0.08 ["CDH1:ArcherDX_panel","CDH1:FoundationOne_panel","CDH1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:38.92Mb] 82 35 82 35 ONLY_REF_SPLICE YES_LDAS 1.4565 GT 1.5656 AG 1.5058 ENST00000320330.8 1-565 ENST00000261769.10 164-2649 chr16|+|[0]29816526-29817007[1]|[2]29817210-29817292[0]<==>chr16|+|[1]68801670-68801893[2]|[0]68808424-68808567[2]|[0]68808693-68808848[2]|[0]68810197-68810341[0]|[1]68811684-68811859[2]|[0]68812135-68812263[2]|[0]68813313-68813495[2]|[0]68815515-68815759[1]|[2]68819280-68819425[0]|[1]68822001-68822225[0]|[1]68823399-68823626[0]|[1]68828174-68828304[2]|[0]68829654-68829797[2]|[0]68833290-68833499[2] atgtcccttgctcggggccatggagacactgcggccagtacggcggcgcctctgtctgaagaaggggaagtgacctccggcctccaggctctggccgtggaggataccggaggcccctctgcctcggccggtaaggccgaggacgagggggaaggaggccgagaggagaccgagcgtgaggggtccgggggcgaggaggcgcagggagaagtccccagcgctgggggagaagagcctgccgaggaggactccgaggactggtgcgtgccctgcagcgacgaggaggtggagctgcctgcggatgggcagccctggatgcccccgccctccgaaatccagcggctctatgaactgctggctgcccacggtactctggagctgcaagccgagatcctgccccgccggcctcccacgccggaggcccagagcgaagaggagagatccgatgaggagccggaggccaaagaagaggaagaggaaaaaccacacatgcccacggaatttgattttgatgatgagccagtgacaccaaaggactccctgattgaccggagacgcaccccagTGAATTTTGAAGATTGCACCGGTCGACAAAGGACAGCCTATTTTTCCCTCGACACCCGATTCAAAGTGGGCACAGATGGTGTGATTACAGTCAAAAGGCCTCTACGGTTTCATAACCCACAGATCCATTTCTTGGTCTACGCCTGGGACTCCACCTACAGAAAGTTTTCCACCAAAGTCACGCTGAATACAGTGGGGCACCACCACCGCCCCCCGCCCCATCAGGCCTCCGTTTCTGGAATCCAAGCAGAATTGCTCACATTTCCCAACTCCTCTCCTGGCCTCAGAAGACAGAAGAGAGACTGGGTTATTCCTCCCATCAGCTGCCCAGAAAATGAAAAAGGCCCATTTCCTAAAAACCTGGTTCAGATCAAATCCAACAAAGACAAAGAAGGCAAGGTTTTCTACAGCATCACTGGCCAAGGAGCTGACACACCCCCTGTTGGTGTCTTTATTATTGAAAGAGAAACAGGATGGCTGAAGGTGACAGAGCCTCTGGATAGAGAACGCATTGCCACATACACTCTCTTCTCTCACGCTGTGTCATCCAACGGGAATGCAGTTGAGGATCCAATGGAGATTTTGATCACGGTAACCGATCAGAATGACAACAAGCCCGAATTCACCCAGGAGGTCTTTAAGGGGTCTGTCATGGAAGGTGCTCTTCCAGGAACCTCTGTGATGGAGGTCACAGCCACAGACGCGGACGATGATGTGAACACCTACAATGCCGCCATCGCTTACACCATCCTCAGCCAAGATCCTGAGCTCCCTGACAAAAATATGTTCACCATTAACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTGGACCGAGAGAGTTTCCCTACGTATACCCTGGTGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGCAACAGCTGTGATCACAGTCACTGACACCAACGATAATCCTCCGATCTTCAATCCCACCACGTACAAGGGTCAGGTGCCTGAGAACGAGGCTAACGTCGTAATCACCACACTGAAAGTGACTGATGCTGATGCCCCCAATACCCCAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGAACAACGATGGCATTTTGAAAACAGCAAAGGGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGGAGCCAGACACATTTATGGAACAGAAAATAACATATCGGATTTGGAGAGACACTGCCAACTGGCTGGAGATTAATCCGGACACTGGTGCCATTTCCACTCGGGCTGAGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACAGACAATGGTTCTCCAGTTGCTACTGGAACAGGGACACTTCTGCTGATCCTGTCTGATGTGAATGACAACGCCCCCATACCAGAACCTCGAACTATATTCTTCTGTGAGAGGAATCCAAAGCCTCAGGTCATAAACATCATTGATGCAGACCTTCCTCCCAATACATCTCCCTTCACAGCAGAACTAACACACGGGGCGAGTGCCAACTGGACCATTCAGTACAACGACCCAACCCAAGAATCTATCATTTTGAAGCCAAAGATGGCCTTAGAGGTGGGTGACTACAAAATCAATCTCAAGCTCATGGATAACCAGAATAAAGACCAAGTGACCACCTTAGAGGTCAGCGTGTGTGACTGTGAAGGGGCCGCTGGCGTCTGTAGGAAGGCACAGCCTGTCGAAGCAGGATTGCAAATTCCTGCCATTCTGGGGATTCTTGGAGGAATTCTTGCTTTGCTAATTCTGATTCTGCTGCTCTTGCTGTTTCTTCGGAGGAGAGCGGTGGTCAAAGAGCCCTTACTGCCCCCAGAGGATGACACCCGGGACAACGTTTATTACTATGATGAAGAAGGAGGCGGAGAAGAGGACCAGGACTTTGACTTGAGCCAGCTGCACAGGGGCCTGGACGCTCGGCCTGAAGTGACTCGTAACGACGTTGCACCAACCCTCATGAGTGTCCCCCGGTATCTTCCCCGCCCTGCCAATCCCGATGAAATTGGAAATTTTATTGATGAAAATCTGAAAGCGGCTGATACTGACCCCACAGCCCCGCCTTATGATTCTCTGCTCGTGTTTGACTATGAAGGAAGCGGTTCCGAAGCTGCTAGTCTGAGCTCCCTGAACTCCTCAGAGTCAGACAAAGACCAGGACTATGACTACTTGAACGAATGGGGCAATCGCTTCAAGAAGCTGGCTGACATGTACGGAGGCGGCGAGGACGACTAG MSLARGHGDTAASTAAPLSEEGEVTSGLQALAVEDTGGPSASAGKAEDEGEGGREETEREGSGGEEAQGEVPSAGGEEPAEEDSEDWCVPCSDEEVELPADGQPWMPPPSEIQRLYELLAAHGTLELQAEILPRRPPTPEAQSEEERSDEEPEAKEEEEEKPHMPTEFDFDDEPVTPKDSLIDRRRTPVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYAWDSTYRKFSTKVTLNTVGHHHRPPPHQASVSGIQAELLTFPNSSPGLRRQKRDWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNPTTYKGQVPENEANVVITTLKVTDADAPNTPAWEAVYTILNDDGGQFVVTTNPVNNDGILKTAKGLDFEAKQQYILHVAVTNVVPFEVSLTTSTATVTVDVLDVNEAPIFVPPEKRVEVSEDFGVGQEITSYTAQEPDTFMEQKITYRIWRDTANWLEINPDTGAISTRAELDREDFEHVKNSTYTALIIATDNGSPVATGTGTLLLILSDVNDNAPIPEPRTIFFCERNPKPQVINIIDADLPPNTSPFTAELTHGASANWTIQYNDPTQESIILKPKMALEVGDYKINLKLMDNQNKDQVTTLEVSVCDCEGAAGVCRKAQPVEAGLQIPAILGILGGILALLILILLLLLFLRRRAVVKEPLLPPEDDTRDNVYYYDEEGGGEEDQDFDLSQLHRGLDARPEVTRNDVAPTLMSVPRYLPRPANPDEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKDQDYDYLNEWGNRFKKLADMYGGGEDD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cadherin 1, type 1, E-cadherin (epithelial) (ECAD) 1 Yes lobular breast, gastric gastric familial gastric carcinoma epithelial TSG missense, nonsense, frameshift, splice_site 28273 POMK::HOOK3 ENSG00000185900.11::ENSG00000168172.9 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 117 FALSE NA FALSE NA POMK ENSG00000185900.11 protein_coding + + chr8:43093498-43131180:+ chr8:43097615:+ chr8:42948641-42986323:+ chr8:42952758:+ HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43013051:+ chr8:42752089-42885678:+ chr8:42868194:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HOOK3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_REARRANGEMENT:+:[62967] 63 47 63 47 ONLY_REF_SPLICE YES_LDAS 1.3694 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Protein kinase-like protein SgK196 Other Other-Unique Q9H5K3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 28275 QPCTL::MRPL4 ENSG00000011478.13::ENSG00000105364.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 120 FALSE NA FALSE NA QPCTL ENSG00000011478.13 protein_coding + + chr19:45692403-45703989:+ chr19:45693556:+ chr19:46195661-46207247:+ chr19:46196814:+ MRPL4 ENSG00000105364.14 protein_coding + + chr19:10251901-10260055:+ chr19:10252397:+ chr19:10362577-10370731:+ chr19:10363073:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Peptidase_M28-PARTIAL|150-351~|3.4e-41 Ribosomal_L4|81-245|8.2e-53 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:35.43Mb] 29 18 29 18 ONLY_REF_SPLICE YES_LDAS 0.5851 GT 1.8892 AG 1.8256 ENST00000012049.10 1-351 ENST00000393733.6 58-1074 chr19|+|[0]45692704-45692910[2]|[0]45693413-45693556[2]<==>chr19|+|[0]10252397-10252463[0]|[1]10252551-10252701[1]|[2]10254589-10254640[2]|[0]10256708-10256825[0]|[1]10258222-10258328[2]|[0]10258413-10258522[1]|[2]10258609-10258685[0]|[1]10259172-10259506[2] atgcgttccgggggccgcgggcgaccccgcctgcggctgggggaacgtggcctcatggagccactcttgccgccgaagcgccgcctgctaccgcgggttcggctcttgcctctgttgctggcgctggccgtgggctcggcgttctacaccatttggagcggctggcaccgcaggactgaggagctgccgctgggccgggagctgcgggtcccattgatcggaagcctccccgaagcccggctgcggagggtggtgggacaactggatccacagcgtctctggagcacttatctgcgccccctgctggttgtgcgaaccccgggcagcccgggaaatctccaagtcagaaagGGCCTGAGTTCCCTGGCGGAAGAGGCAGCGCGTGCGACCGAGAACCCGGAGCAGGTGGCGAGCGAGGGTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTACCCACTCATCGACGCCCAGTGCAGGCCTGGGTCGAGTCCTTGCGGGGCTTCGAGCAGGAGCGCGTGGGCCTGGCCGACCTGCACCCCGATGTTTTCGCCACCGCGCCCAGGCTGGACATACTGCACCAGGTTGCTATGTGGCAGAAGAACTTCAAGAGAATTAGCTATGCCAAGACCAAGACGAGAGCCGAGGTGCGGGGCGGTGGCCGGAAGCCTTGGCCGCAGAAAGGCACTGGGCGGGCCCGGCATGGCAGCATCCGCTCTCCGCTCTGGCGAGGAGGAGGTGTTGCCCATGGCCCCCGGGGCCCCACAAGTTACTACTACATGCTGCCCATGAAGGTGCGGGCGCTGGGTCTCAAAGTGGCACTGACCGTCAAGCTGGCCCAGGACGACCTGCACATCATGGACTCCCTAGAGCTGCCCACCGGAGACCCACAGTACCTGACAGAGCTGGCGCACTACCGCCGCTGGGGGGACTCCGTACTCCTCGTGGACTTAACACACGAGGAGATGCCACAGAGCATCGTGGAGGCCACCTCTAGGCTTAAGACCTTCAACTTGATCCCGGCTGTTGCCACAAGATGGCGACATGAGCCTAAGTCAAGTCCTGTCCCTCAACCCACGCCCCTCGCTGGCTTCCCCACCTCTCTCAGGATGAAAGCCCAAGTCATCAGGGTGGCACGTCAGGCCCTGCACGATGTGCCCCGTCACCTCCCTGCCCTCCCGTCATTTGCCCTGGGTCTCCCCCACCAGAATGGGAGCCAGGAGTCCCAGCCAGGCACAGGACCGAGCCTGGCTCTCGGTCAGCAGGTGATGAGCTGGGAGCAGCTCCTTGGCCAGAGGCTTACAGGCAACAAGCGGCCAGGCAGGGTCTGGCCCCGGGCTGCTGGGCTCACAAAGTCACACTAG MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGSAFYTIWSGWHRRTEELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVATRWRHEPKSSPVPQPTPLAGFPTSLRMKAQVIRVARQALHDVPRHLPALPSFALGLPHQNGSQESQPGTGPSLALGQQVMSWEQLLGQRLTGNKRPGRVWPRAAGLTKSH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28276 SNED1::DNAH7 ENSG00000162804.15::ENSG00000118997.14 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 123 FALSE NA FALSE NA SNED1 ENSG00000162804.15 protein_coding + + chr2:240998618-241095568:+ chr2:240999050:+ chr2:241938035-242034983:+ chr2:241938467:+ DNAH7 ENSG00000118997.14 protein_coding - - chr2:195737703-196068837:- chr2:195756285:- chr2:196602427-196933561:- chr2:196621009:- chr2:241028510,chr2:241028511 chr2:195757224,chr2:195757223 NA NA chr2:241967927,chr2:241967928 chr2:196621948,chr2:196621947 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NIDO-PARTIAL|70-213~|1.1e-66 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:44.93Mb] 28 6 28 6 ONLY_REF_SPLICE YES_LDAS 0.4233 GT 1.8295 AG 1.8892 ENST00000405547.7 1-213 ENST00000409063.5 883-1524 chr2|+|[0]240998838-240999050[2]<==>chr2|-|[2]195737921-195738127[0]|[2]195740766-195740869[1]|[0]195754337-195754514[0]|[2]195756133-195756285[0] atgcggcacggcgtcgcctgggcgctgctggtggccgcggccctggggcttggggcgcgcggggtgcgcggcgcggtggcccttgccgacttctacccgttcggcgccgagcgcggcgacgccgtcacccccaagcaggacgacggcggctcggggctgcggccgctctcggtgcccttcccgttcttcggtgccgagcactccggactctacGGGCTTGCAGTCATGTCTACAGATCTTGAAGAAGTGGTTAGCAGCATTTTGAATGTCAAAATTCCAGAAATGTGGATGGGTAAATCCTACCCAAGCCTTAAACCACTTGGCAGCTATGTGAATGACTTCCTTGCAAGACTAAAATTCTTGCAGCAATGGTATGAGGTTGGTCCTCCTCCAGTCTTCTGGCTTTCTGGCTTCTTCTTCACACAAGCCTTCCTGACCGGTGCCCAGCAGAACTACGCCAGGAAATACACAATTCCTATTGATCTTCTTGGGTTTGACTATGAAGTGATGGAAGACAAAGAATACAAGCATCCTCCTGAGGATGGTGTTTTCATTCACGGATTATTTCTGGATGGAGCTTCCTGGAATAGAAAGATCAAGAAACTTGCAGAATCGCATCCCAAAATTCTTTATGATACAGTGCCTGTGATGTGGCTAAAGCCCTGTAAGAGGGCAGATATACCAAAACGGCCAAGTTATGTTGCTCCATTGTATAAGACAAGTGAGCGGAGAGGAGTATTATCCACCACTGGCCATTCCACGAATTTTGTGATTGCCATGACTCTTCCCTCTGACCAACCCAAGGAACACTGGATTGGACGAGGTGTAGCACTGTTATGTCAACTTAATTCATAA MRHGVAWALLVAAALGLGARGVRGAVALADFYPFGAERGDAVTPKQDDGGSGLRPLSVPFPFFGAEHSGLYGLAVMSTDLEEVVSSILNVKIPEMWMGKSYPSLKPLGSYVNDFLARLKFLQQWYEVGPPPVFWLSGFFFTQAFLTGAQQNYARKYTIPIDLLGFDYEVMEDKEYKHPPEDGVFIHGLFLDGASWNRKIKKLAESHPKILYDTVPVMWLKPCKRADIPKRPSYVAPLYKTSERRGVLSTTGHSTNFVIAMTLPSDQPKEHWIGRGVALLCQLNS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28277 CCDC88C::CATSPERB ENSG00000015133.20::ENSG00000133962.8 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 122 FALSE NA FALSE NA CCDC88C ENSG00000015133.20 protein_coding - - chr14:91271323-91417844:- chr14:91416738:- chr14:91737667-91884188:- chr14:91883082:- CATSPERB ENSG00000133962.8 protein_coding - - chr14:91580696-91780707:- chr14:91617736:- chr14:92047040-92247051:- chr14:92084080:- chr14:91413293,chr14:91413300 chr14:91621648,chr14:91621652 NA NA chr14:91879637,chr14:91879644 chr14:92087992,chr14:92087996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HOOK_N|16-91|4.3e-10^TetR_C_7|38-72|2.9e-05 none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.16Mb] 28 13 28 13 ONLY_REF_SPLICE YES_LDAS 0.5104 GT 1.8323 AG 1.7968 ENST00000553403.1 1-161 ENST00000256343.8 2261-3351 chr14|-|[1]91416738-91416838[0]|[2]91417631-91417690[0]<==>chr14|-|[2]91580889-91581107[0]|[2]91587202-91587276[0]|[2]91587978-91588078[1]|[0]91589534-91589669[0]|[2]91591892-91592002[0]|[2]91608294-91608404[0]|[2]91610480-91610677[0]|[2]91617597-91617736[1] atggacgtgacagtctcggagctcctggagctcttcctgcagagcccgctggtgacctgggtgaaaacttttggcccgtttggaagcggcagccaggacaacctgactatgtacatggatttagtggacggcatctttttgaaccaaattatgctgcaaatGTTTTCGAATGCTTGAAATACCACTACTGACTGTGTTTGTTGGAAACCCTAATTTGTTGGAAGTTACAGCTGAAGTGACTTTTGATGATACTGACAGTTATGTAATAACAATTTCTGCAGCTAGCAAAGTTTTACATCAGGGTTCAACTTCACTGGCATTTATTATGTGGTCAGCCTCTACTGAGTGCTTTGTTACGACAATGGTGCCAACACTGAAAAGCAGCTGTAGTTATCTCAGATCTATGCATCACATTCCTAGCAAATTTATCCCATTTGAAGACTGGATTAGTGGAGTTCATAAAGACAGTCAGGGTTTTAACCTCATCAAAACTTTGCCGATAAACTACAGGCCTCCATCTAATATGGGAATTGCTATTCCACTCACAGATAATTTTTATCATGCAGATCCTAGCAAACCCATACCAAGAAACATGTTTCACATGTCAAAGAAAACCGGTAAATTCAAACAGTGTGCTAATGTTTCCACTCGGGAGGAGTGTAACTGCACAAAGGATCAGAAGTTTTCACATGCTGTTGCTTTCTCGGATTGCAGGGAAAAAGTTCCTCGCTTTAAGTTTCCAATTACACAATATCCAGTTTCTTTGGAAATTATCAACGAGGATGGACGTGTCCCATTGCAATCTCCATATCTGGTTACTGTGACTGAAGTGAACATGAGGCACAACTGGAAACTGAAACACACTGTGCCAGAAAATATTAAAAGAATGAAACAATTAGTAGAACCAATTCTTGGTGCTGCAGTGTATAATCCTTCAGGTCTCAACTTAAGCATAAAGGGCTCTGAACTTTTCCACTTTAGAGTGACCGTCATTTCAGGAGTAACTTTTTGTAACTTAATTGAAGAATTTCAGATTTATGTTGATGAGGCACCATTGCCATTCCCAGGACACACGCTTATTGCCGTGGCAACAGCGGTAGTGCTAGGGGGATTAATTTTTATAGCATTTATGTTTCAACTGCAAGGCATCCATCCGTGGAGGACATTCCAAAGATGGATTAGAAGAAACCAAGAGAAGTTTTCAAGTATCTCTCTCAGTGAGCTGATTCATAGATCAAAGTCTGAAGAGTGA MDVTVSELLELFLQSPLVTWVKTFGPFGSGSQDNLTMYMDLVDGIFLNQIMLQMFSNA*NTTTDCVCWKP*FVGSYS*SDF**Y*QLCNNNFCS*QSFTSGFNFTGIYYVVSLY*VLCYDNGANTEKQL*LSQIYASHS*QIYPI*RLD*WSS*RQSGF*PHQNFADKLQASI*YGNCYSTHR*FLSCRS*QTHTKKHVSHVKENR*IQTVC*CFHSGGV*LHKGSEVFTCCCFLGLQGKSSSL*VSNYTISSFFGNYQRGWTCPIAISISGYCD*SEHEAQLETETHCARKY*KNETISRTNSWCCSV*SFRSQLKHKGL*TFPL*SDRHFRSNFL*LN*RISDLC**GTIAIPRTHAYCRGNSGSARGINFYSIYVSTARHPSVEDIPKMD*KKPREVFKYLSQ*ADS*IKV*RV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28282 SLC49A3::ARL15 ENSG00000169026.13::ENSG00000185305.12 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 127 FALSE NA FALSE NA SLC49A3 ENSG00000169026.13 protein_coding - - chr4:681829-689271:- chr4:686532:- chr4:675618-683060:- chr4:680321:- ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:53886713:- chr5:53179772-53606412:- chr5:53182543:- chr4:684092,chr4:684097 chr5:53925007,chr5:53925009 NA NA chr4:677881,chr4:677886 chr5:53220837,chr5:53220839 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MFS_1|37-112|9.2e-07^MFS_1|84-289|6.8e-13^PhaG_MnhG_YufB|98-110|1.3^PhaG_MnhG_YufB|189-268|5.9e-06^MFS_1-PARTIAL|293-294~|0.0016 none none 10 2 10 2 ONLY_REF_SPLICE YES_LDAS 0.1494 GT 1.3996 AG 1.2729 ENST00000515118.5 1-294 ENST00000504924.6 463-615 chr4|-|[2]686532-686690[0]|[2]688993-689127[0]<==>chr5|-|[2]53886561-53886713[0] atggcggggccgacggaggccgagacggggttggccgagccccgggccctgtgcgcgcagcggggccaccgcacctacgcgcgccgctgggtgttcctgctcgcgatcagcctgctcaactgctccaacgccacgctgtggctcagctttgcacctgtggctgacgtcattgctgaggacttggtcctgtccatggagcagatcaactggctgtcactggtctacctcgtggtatccaccccatttggcgtggcggccatctggatcctggactccgtcgggctccgtgcggcgATCAAAAAATATTTTGAACTTGAACCACTTGCACGTGGAAAACGCTGGATTCTACAGCCCTGCTCACTGGATGACATGGATGCACTGAAAGACAGCTTCTCTCAGCTGATTAATTTGTTAGAAGAAAAAGACCATGAAGCTGTAAGAATGTGA MAGPTEAETGLAEPRALCAQRGHRTYARRWVFLLAISLLNCSNATLWLSFAPVADVIAEDLVLSMEQINWLSLVYLVVSTPFGVAAIWILDSVGLRAAIKKYFELEPLARGKRWILQPCSLDDMDALKDSFSQLINLLEEKDHEAVRM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28283 PRR14::ANKS3 ENSG00000156858.12::ENSG00000168096.15 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 124 FALSE NA FALSE NA PRR14 ENSG00000156858.12 protein_coding + + chr16:30650717-30656413:+ chr16:30653408:+ chr16:30662038-30667734:+ chr16:30664729:+ ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4705253:- chr16:4746511-4784379:- chr16:4755254:- chr16:30653766 chr16:4710608 NA NA chr16:30665087 chr16:4760609 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tantalus|459-516|2e-29 SAM_1-PARTIAL|~323-356|2.4e-15^SAM_2-PARTIAL|~323-354|1.4e-14 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:25.92Mb] 10 13 10 10.8 ONLY_REF_SPLICE YES_LDAS 0.2589 GT 1.7056 AG 1.7232 ENST00000542965.2 1-548 ENST00000446014.6 323-1584 chr16|+|[0]30651646-30651668[1]|[2]30651796-30651964[2]|[0]30652721-30652842[1]|[2]30652914-30653103[2]|[0]30653365-30653408[1]<==>chr16|-|[2]4697028-4697104[1]|[0]4697333-4697416[1]|[0]4697977-4698062[2]|[1]4698427-4698599[0]|[2]4698800-4698941[2]|[1]4699052-4699176[0]|[2]4700970-4701134[0]|[2]4701434-4701543[1]|[0]4702102-4702242[1]|[0]4705095-4705253[1] atggacttgcccggggactccagcccgcctggccagccgcgtctgtgccgccagcctctgactcgagcattatggggagccaggagcccgaaacggccgaggctgcagctcccgggggccccttctcccctggaaaaggcctctcggcgggtcctggccgtggtgctagaagatgtcatggctgttcacatggtccccgtggtgccctcaaagcagacctccataccacagcaccacagctaccatcaggatcctgtccacaggcagccgcctgcctcgccaccccggcaggccgggtggtcctcgcaggccaggcctcccgaccctctgtgtttgtgtcgcgagcccttgagccgcatccaccggacctcttccaccctgaggcggcgatcaaggacaacccctggcccagaggagggcccttcacaaaaggtggaccgggccccccagcccaccctggtggtgatgctggaagacatcgccagtcctagaccccccgctgagggcttcattgatgagacccccaacttcatcatcccagcacaaagAAAAGTACGAAGATCTGAGCTCTTCTGACGAGTCCTGCCCTGCTCCTCAGAGACAGAGGCCTTGCCGGAAGAAGGGTGTCAGCATCCACGAGGGACCGCGAGCCCTGGCCAGGATCACAGGCATTGGCCTGGGCGGCAGAGCCCCACGGCCTCGCTATGAGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACCTCCCCCATCAATGAGCGGGATGTGGAGAGCAGCAGCAGCAGCAGCAGTCGGGAGGAACATGCTTTCTGTGCCAACCTGGGGCCCGTCCAGAGCAGCAGCAGCAGCGAGGGCCTGGCCAGAGCCCAGGGGCTCAGCAGCGAAGCTTCTGTGGAGAGCAACGAGGACTCGGATCATGCCTGTAAAAGCTCAGCTCGCAAACAAGCTAAAAGTTACATGAAGACCAAGAATCCTGACAGCCAGTGGCCTCCCCGCGCTGCAACTGACAGGGAAGGCTTTCTCGCTGAGTCCAGCCCCCAGACTCAGAGGGCCCCCTACTCAGGACCCCAGGACCTTGCCGCACTGCTGGAGCAGATCGGGTGTCTGAAGTACCTGCAGGTGTTTGAGGAGCAGGACGTGGACCTCCGCATCTTTCTGACCCTCACTGAGAGCGACCTGAAGGAAATTGGCATCACGCTGTTTGGGCCCAAGAGGAAGATGACGTCCGCCATTGCCCGCTGGCACAGCAGTGCCCGCCCACCCGGGGATGCCCTGGAGCTGGCCTACGCCGACCGGCTGGAGGCTGAGATGCAGGAGCTCGCCATCCAGCTGCACAAGCGCTGCGAGGAGGTAGAGGCCACGCGGGGCCAGGTGTGTCAGGAGCAGGAGCTGCGCGCCGTGGTGGAGAGCTGCCTGCTGGAGCAGGACCGCGCCCGCGAGGACCTCCAGGCCCGGCTGCGGGAGACGTGGGCCCTGGCCCGGGATGCTGCCCTCGTCCTGGACCAGCTGCGAGCCTGTCAAGCTGAGCTGTCATCTCGAGTGAGGCAGGACCAGCCCCCTGGTGCAGCCACTCTGGGCCTAGCCGTCCCCCCAGCTGACTCCAAGGGCTGGCAAGCGTCCCTGCAGGCCATGAGCCTCCCCGAGCTCTCGGGAGCCCTGGAGGACCGTGTCCGTGAGATGGGGCAAGCACTGTGCTTAGTGACCCAGAGCCTGGAGAAGCTGCAGGTGCTGAACGGGAAGAAGTGGCGGGAGACCTAG MDLPGDSSPPGQPRLCRQPLTRALWGARSPKRPRLQLPGAPSPLEKASRRVLAVVLEDVMAVHMVPVVPSKQTSIPQHHSYHQDPVHRQPPASPPRQAGWSSQARPPDPLCLCREPLSRIHRTSSTLRRRSRTTPGPEEGPSQKVDRAPQPTLVVMLEDIASPRPPAEGFIDETPNFIIPAQRKVRRSELF*RVLPCSSETEALPEEGCQHPRGTASPGQDHRHWPGRQSPTASL*AGSSPWLCHLQQQWREPPGRRGPLLPGCHLPHQ*AGCGEQQQQQQSGGTCFLCQPGARPEQQQQRGPGQSPGAQQRSFCGEQRGLGSCL*KLSSQTS*KLHEDQES*QPVASPRCN*QGRLSR*VQPPDSEGPLLRTPGPCRTAGADRVSEVPAGV*GAGRGPPHLSDPH*ERPEGNWHHAVWAQEEDDVRHCPLAQQCPPTRGCPGAGLRRPAGG*DAGARHPAAQALRGGRGHAGPGVSGAGAARRGGELPAGAGPRPRGPPGPAAGDVGPGPGCCPRPGPAASLSS*AVISSEAGPAPWCSHSGPSRPPS*LQGLASVPAGHEPPRALGSPGGPCP*DGASTVLSDPEPGEAAGAEREEVAGDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28284 STK32B::LINC02105 ENSG00000152953.13::ENSG00000250447.6 CAL120 SRR8615270 SRR8639201 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STK32B ENSG00000152953.13 protein_coding + + chr4:5051480-5500994:+ chr4:5331393:+ chr4:5053207-5502721:+ chr4:5333120:+ LINC02105 ENSG00000250447.6 lncRNA - - chr5:53776048-53819722:- chr5:53785144:- chr5:53071878-53115552:- chr5:53080974:- chr4:5384123,chr4:5384124 chr5:53806141,chr5:53806140 NA NA chr4:5385850,chr4:5385851 chr5:53101971,chr5:53101970 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.1618 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 32B AGC YANK Q9NY57 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28294 DCBLD2::PCGF3 ENSG00000057019.16::ENSG00000185619.19 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DCBLD2 ENSG00000057019.16 protein_coding - - chr3:98795941-98901695:- chr3:98808081:- chr3:98514785-98620539:- chr3:98526925:- PCGF3 ENSG00000185619.19 protein_coding + + chr4:705748-770089:+ chr4:730630:+ chr4:699537-763877:+ chr4:724419:+ chr3:98805833,chr3:98805836,chr3:98805838 chr4:720177,chr4:720174,chr4:720174 NA NA chr3:98524677,chr3:98524680,chr3:98524682 chr4:713966,chr4:713963,chr4:713963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr4] 94 72 94 72 ONLY_REF_SPLICE YES_LDAS 2.0607 GT 1.7819 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28296 DAAM1::LINC01500 ENSG00000100592.16::ENSG00000258583.7 CAKI1 SRR8615272 SRR8639204 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 129 FALSE NA FALSE NA DAAM1 ENSG00000100592.16 protein_coding + + chr14:59188646-59371405:+ chr14:59188768:+ chr14:59655364-59838123:+ chr14:59655486:+ LINC01500 ENSG00000258583.7 lncRNA + + chr14:58646631-59184247:+ chr14:59183663:+ chr14:59113349-59650965:+ chr14:59650381:+ chr14:59202521 chr14:59181957 NA NA chr14:59669239 chr14:59648675 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr14:0.17Mb] 11 1 11 1 ONLY_REF_SPLICE YES_LDAS 0.149 GT 1.7968 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28309 LARP4::DIP2B ENSG00000161813.23::ENSG00000066084.13 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 132 FALSE NA FALSE NA LARP4 ENSG00000161813.23 protein_coding + + chr12:50392383-50480004:+ chr12:50474167:+ chr12:50786166-50873787:+ chr12:50867950:+ DIP2B ENSG00000066084.13 protein_coding + + chr12:50504985-50748657:+ chr12:50625976:+ chr12:50898768-51142440:+ chr12:51019759:+ chr12:50475564,chr12:50475502,chr12:50475561 chr12:50525054,chr12:50525054,chr12:50525048 NA NA chr12:50869347,chr12:50869285,chr12:50869344 chr12:50918837,chr12:50918837,chr12:50918831 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame La|129-185|3.5e-24^SET_assoc|216-260|2.7e-05 DMAP_binding-PARTIAL|~101-131|1.1e-38^AMP-binding|364-763|8.4e-24^AMP-binding|996-1405|2.9e-48 ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.02Mb];NEIGHBORS[24981] 8 9 8 9 ONLY_REF_SPLICE YES_LDAS 0.1809 GT 1.9329 AG 1.8256 ENST00000429001.7 1-1854 ENST00000301180.10 101-4731 chr12|+|[0]50401011-50401028[2]|[0]50427762-50427909[0]|[1]50428917-50429090[0]|[1]50430495-50430570[1]|[2]50435488-50435624[0]|[1]50437735-50437838[2]|[0]50440439-50440549[2]|[0]50441590-50441643[2]|[0]50453460-50453672[2]|[0]50454314-50454417[1]|[2]50461135-50461347[1]|[2]50462582-50462630[2]|[0]50466959-50467120[2]|[0]50473415-50473536[1]|[2]50473999-50474167[2]<==>chr12|+|[1]50625976-50626047[0]|[1]50640724-50640852[0]|[1]50660194-50660319[0]|[1]50671186-50671398[0]|[1]50674474-50674629[0]|[1]50675329-50675448[0]|[1]50678679-50678876[0]|[1]50680672-50680763[2]|[0]50683138-50683248[2]|[0]50685833-50685956[0]|[1]50686573-50686682[2]|[0]50691049-50691151[0]|[1]50692949-50693013[2]|[0]50695267-50695360[0]|[1]50695848-50695967[0]|[1]50697061-50697175[1]|[2]50698328-50698467[0]|[1]50699066-50699202[2]|[0]50704140-50704220[2]|[0]50706538-50706665[1]|[2]50708448-50708562[2]|[0]50714395-50714596[0]|[1]50718709-50718818[2]|[0]50718955-50719035[2]|[0]50721273-50721396[0]|[1]50723202-50723323[2]|[0]50724775-50724886[0]|[1]50727703-50727812[2]|[0]50728548-50728678[1]|[2]50731369-50731537[2]|[0]50732366-50732536[2]|[0]50734135-50734196[1]|[2]50735073-50735130[2]|[0]50737036-50737110[2]|[0]50739409-50739586[0]|[1]50741416-50741539[1]|[2]50744587-50744839[2] atgttgcttttcgtggagcaggtagcatctaaaggaactggtttaaatcctaatgccaaagtatggcaagaaattgctcctggaaatactgatgccaccccagtaactcatggaactgaaagctcttggcatgaaatagcagctacatcaggtgctcatcctgaggtgtctgtctttaatacaggtaatgcagagctctcagaagatatatgtaaagaatatgaagtaatgtattcttcatcttgtgaaaccacaagaaatactacaggcattgaagaatcaactgatgggatgattttaggaccagaagatctgagttaccaaatatatgatgtttccggagaaagcaattcagcagtttctacagaagacctaaaagaatgtctgaagaaacaattagaattctgtttttcacgagaaaatttgtcaaaggatctttacttgatatctcaaatggatagtgatcagttcatcccaatttggacagttgccaacatggaagaaataaaaaagttgactacagaccctgatctaattcttgaagtgttaagatcttctcccatggtacaagttgatgagaagggtgagaaagtgagaccaagtcataagcgttgtattgtaattcttagagagattcctgaaacaacaccaatagaggaagtgaaaggtttgttcaaaagtgaaaactgccccaaagtgataagctgtgagtttgcacacaatagcaactggtatatcactttccagtcagacacagatgcacaacaggcttttaaatacttaagagaagaagttaaaacatttcagggcaagccaattatggcaaggataaaagccatcaatacattttttgctaagaatggttatcgattaatggattctagtatctatagtcaccccattcaaactcaagcacagtatgcctccccagtctttatgcagcctgtatataatcctcaccaacagtactcggtctatagtattgtgcctcagtcttggtctccaaatcctacaccttactttgaaacaccactggctccctttcccaatggtagttttgtgaatggctttaattcgccaggatcttataaaacaaatgctgctgctatgaatatgggtcgaccattccaaaaaaatcgtgtgaagcctcagtttaggtcatctggtggttcagaacactcaacagagggctctgtatccttgggggatggacagttgaacagatatagttcaagaaactttccagctgaacggcataaccccacagtaactgggcatcaggagcaaacttaccttcagaaggagacttccactttgcaggtggaacagaatggggactatggtaggggcaggagaactctcttcagaggtcgaagacgacgagaagatgacaggatctcaagacctcatccttcaacagctgaatcaaaggctccaacaccaaagtttgacttattagcctcaaattttccacctttacctggaagttcatcaagaatgccaggtgaactcgttttggagaataggatgtctgatgttgttaaaggtgtctacaaagaaaaggataatgaagagttgacaattagttgcccagtgcctgcagatgagcagacagaatgcacttctgcccagcaactcaatatgagtaccagttctccatgtgctgctgagcttactgcattaagcacaactcagcaagaaaaggatctaatagaagattcctctgttcagaaggatggtctcaatcagacaactataccagtttctcctccaagtactacaaagccatcgagggcaagtactgcttcaccatgtaataataacataaatgcagctacagctgtggctctacagGGGACATCACCCAGAAGGGCTATGAAAAGAAAAGGTCCAAACTCCTATCTCCTTACAGCCCGCAGACACAAGAAACTGATTCAGCAGTACAGAAAGAACTTAGAAACCAGACACCTGCTCCATCTGCAGCTCAAACTTCTGCTCCCTCTAAGTACCACCGAACTCGATCTGGGGGAGCCAGGGATGAACGATATCGATCAGATATCCACACAGAAGCAGTTCAGGCTGCACTGGCAAAGCATAAAGAACAGAAGATGGCTTTGCCCATGCCAACCAAAAGGCGATCCACATTTGTTCAGTCTCCTGCAGATGCCTGCACACCTCCTGACACATCTTCGGCCTCTGAGGATGAGGGCTCTCTGAGACGCCAAGCTGCGCTCTCTGCTGCCTTGCAACAGAGCTTACAGAATGCTGAGTCCTGGATCAACCGTTCAATTCAGGGATCGTCCACTTCTTCATCCGCATCTTCTACGCTGTCCCACGGAGAGGTCAAAGGAACCAGTGGGTCTCTAGCTGATGTATTTGCCAATACTCGAATAGAGAATTTCTCTGCTCCTCCTGATGTCACTACAACTACCTCTTCCTCCTCATCATCTTCCTCAATTCGCCCAGCAAACATTGACCTGCCCCCCTCGGGGATAGTTAAAGGCATGCACAAAGGATCCAACAGGTCCAGCCTTATGGATACAGCTGATGGTGTTCCTGTCAGTAGCAGAGTATCTACAAAAATCCAGCAGCTTCTGAACACTCTGAAACGACCCAAAAGGCCTCCCTTAAAGGAATTTTTTGTGGATGACTCTGAAGAAATTGTGGAAGTACCTCAGCCAGACCCCAACCAGCCCAAGCCGGAGGGACGGCAGATGACCCCTGTGAAAGGAGAGCCTTTAGGAGTCATCTGTAACTGGCCTCCTGCTCTTGAATCTGCCCTGCAGCGCTGGGGTACCACTCAAGCAAAATGCTCCTGTCTGACTGCACTGGACATGACAGGGAAACCAGTTTACACTCTTACATATGGAAAGTTGTGGAGCAGAAGTTTAAAGTTGGCCTACACACTTCTTAATAAACTGGGGACCAAAAATGAACCTGTGTTAAAACCTGGAGACAGGGTAGCCCTGGTTTACCCCAACAATGATCCAGTCATGTTTATGGTGGCTTTCTATGGATGCCTCCTGGCAGAAGTGATTCCAGTGCCTATAGAGGTACCTCTTACCAGAAAGGATGCTGGAGGTCAGCAGATTGGCTTCTTGCTAGGAAGCTGTGGTATTGCCTTAGCTCTTACCAGTGAAGTTTGTCTAAAAGGACTGCCAAAAACCCAGAATGGAGAAATTGTACAGTTTAAAGGTTGGCCCCGGCTCAAATGGGTTGTAACAGATTCCAAGTACCTTTCAAAGCCACCGAAAGACTGGCAGCCACACATCTCACCTGCTGGGACAGAACCGGCATACATTGAGTATAAAACAAGCAAAGAAGGGAGTGTAATGGGAGTTACAGTATCCCGGCTTGCAATGTTGTCTCACTGCCAAGCTCTGTCGCAGGCCTGCAATTATTCTGAAGGGGAAACAATAGTAAATGTCTTAGACTTTAAGAAGGATGCTGGGCTGTGGCACGGCATGTTTGCGAATGTAATGAATAAGATGCACACAATCAGCGTACCCTACTCTGTTATGAAAACCTGTCCTCTCTCTTGGGTCCAAAGAGTACATGCTCACAAAGCCAAGGTAGCTTTAGTAAAATGTCGGGACTTGCACTGGGCTATGATGGCACATCGGGACCAAAGAGACGTGAGCTTGAGTTCCCTCCGAATGTTAATTGTGACTGATGGAGCTAACCCCTGGTCCGTGTCATCCTGTGATGCCTTCCTGAGTCTGTTCCAAAGTCATGGACTGAAGCCTGAGGCCATCTGTCCGTGCGCCACGTCTGCTGAAGCCATGACTGTAGCAATCCGCAGGCCTGGAGTTCCAGGAGCCCCTTTGCCAGGAAGAGCCATTCTCTCAATGAATGGATTGAGCTATGGGGTAATACGGGTCAATACTGAAGATAAAAATTCAGCACTGACGGTCCAGGATGTAGGGCATGTAATGCCTGGTGGGATGATGTGCATTGTGAAACCAGATGGACCTCCCCAGCTCTGCAAAACAGATGAAATTGGAGAAATCTGTGTTAGCTCCAGAACTGGAGGCATGATGTACTTTGGGCTTGCTGGTGTGACAAAAAATACATTTGAGGTAATTCCAGTGAATTCTGCAGGCTCTCCTGTTGGGGATGTGCCATTCATCCGATCAGGATTGCTGGGGTTTGTAGGGCCGGGTAGTTTGGTGTTCGTGGTTGGGAAAATGGATGGCTTACTGATGGTTAGTGGTCGAAGACATAATGCTGATGACATTGTTGCTACTGGATTGGCTGTAGAATCAATAAAGACTGTTTATAGAGGAAGAATTGCTGTGTTTTCTGTGTCTGTATTTTATGATGAGCGCATTGTGGTGGTTGCGGAACAAAGACCTGATGCTTCTGAGGAAGATAGTTTCCAGTGGATGAGCCGCGTGCTGCAGGCGATCGATAGCATTCATCAAGTGGGGGTTTATTGTCTTGCTCTGGTGCCAGCCAATACATTGCCAAAAACTCCACTAGGAGGAATCCATATATCTCAGACGAAACAACTCTTTCTGGAGGGATCACTGCATCCTTGCAACATCCTCATGTGCCCCCATACATGTGTGACAAACTTGCCAAAGCCCCGGCAAAAACAACCAGGTGTAGGCCCTGCTTCCGTGATGGTTGGGAATCTGGTTGCTGGAAAACGTATAGCACAAGCTGCTGGAAGGGATCTGGGACAAATAGAAGAGAATGATTTGGTGAGGAAGCACCAGTTTCTGGCAGAGATCCTACAGTGGCGAGCCCAGGCGACTCCTGACCATGTACTCTTCATGCTGTTAAATGCCAAGGGAACCACTGTATGCACAGCCAGCTGCCTTCAGCTTCATAAGCGAGCAGAGAGGATTGCATCTGTTCTTGGTGATAAGGGACATCTAAATGCAGGAGATAATGTGGTGTTGCTCTATCCACCTGGCATTGAGTTAATCGCCGCCTTCTATGGCTGCCTGTATGCGGGCTGTATACCTGTGACCGTCAGACCTCCACATGCTCAGAACCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGATGTCAGCAAAGCAGCCTGTATTCTCACCAGTCAGACCCTAATGAGGCTACTGAGGTCCCGAGAGGCAGCAGCAGCTGTGGATGTGAAAACCTGGCCAACCATCATTGACACAGATGATTTACCCAGGAAAAGGTTACCTCAGCTGTATAAACCGCCCACTCCTGAGATGTTGGCATATCTTGATTTTAGTGTCTCCACAACTGGCATGCTTACAGGAGTGAAGATGTCCCACTCTGCAGTGAACGCTCTGTGTCGAGCCATCAAGCTCCAGTGTGAGTTGTACTCTTCTCGGCAGATCGCCATCTGCCTTGACCCTTACTGTGGACTTGGCTTCGCGCTCTGGTGTCTCTGCAGTGTCTATTCAGGCCACCAGTCTGTCTTAATTCCTCCTATGGAGTTAGAGAACAACCTTTTCCTCTGGCTCTCCACAGTCAACCAGTACAAAATAAGGGACACTTTCTGCTCCTATTCAGTGATGGAGCTCTGCACCAAAGGTCTTGGGAACCAAGTGGAAGTGCTAAAGACCAGAGGGATCAACCTCTCCTGCGTCCGGACCTGTGTGGTGGTGGCGGAGGAGAGGCCCCGCGTTGCACTCCAGCAGTCCTTCTCTAAGCTCTTCAAAGACATCGGGCTGTCCCCGCGGGCTGTCAGCACCACTTTTGGATCAAGAGTCAATGTAGCAATATGTTTACAGGGAACCTCAGGGCCTGATCCGACTACTGTGTATGTGGATCTGAAATCACTAAGACATGACAGGGTTCGTCTCGTGGAACGTGGCGCCCCTCAGAGTTTGCTTCTCTCAGAGTCTGGAAAGATTTTACCTGGAGTGAAAGTGGTTATTGTTAATCCTGAGACCAAAGGGCCGGTTGGAGACTCTCACCTTGGAGAGATTTGGGTGAACAGTCCCCATACAGCCAGCGGCTACTACACCATCTATGATAGCGAGACTCTTCAAGCTGATCATTTCAACACTCGCCTCAGCTTTGGAGATGCAGCTCAGACACTCTGGGCTCGGACAGGATACCTTGGTTTTGTCCGCCGGACCGAGCTCACAGCGGCCACTGGAGAGCGTCATGATGCATTGTATGTGGTGGGAGCGCTGGATGAAACACTGGAGCTGAGAGGATTACGATACCACCCAATTGATATTGAGACCTCGGTGTCCCGGATCCACAGAAGCATTGCTGAATGTGCCGTGTTCACATGGACCAACTTGCTTGTGGTGGTTGTGGAACTGTGCGGCTCTGAACAGGAAGCCCTAGATCTGGTCCCATTAGTGACCAACGTGGTCCTGGAAGAGCATTACCTCATCGTTGGCGTCGTGGTTGTGGTGGACCCAGGTGTCATCCCGATCAACTCCAGAGGAGAGAAGCAGAGGATGCACCTCCGTGATAGCTTCCTAGCTGACCAGTTAGACCCCATCTACGTGGCTTATAACATGTAA MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEVSVFNTGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVALQGTSPRRAMKRKGPNSYLLTARRHKKLIQQYRKNLETRHLLHLQLKLLLPLSTTELDLGEPGMNDIDQISTQKQFRLHWQSIKNRRWLCPCQPKGDPHLFSLLQMPAHLLTHLRPLRMRAL*DAKLRSLLPCNRAYRMLSPGSTVQFRDRPLLHPHLLRCPTERSKEPVGL*LMYLPILE*RISLLLLMSLQLPLPPHHLPQFAQQTLTCPPRG*LKACTKDPTGPALWIQLMVFLSVAEYLQKSSSF*TL*NDPKGLP*RNFLWMTLKKLWKYLSQTPTSPSRRDGR*PL*KESL*ESSVTGLLLLNLPCSAGVPLKQNAPV*LHWT*QGNQFTLLHMESCGAEV*SWPTHFLINWGPKMNLC*NLETG*PWFTPTMIQSCLWWLSMDASWQK*FQCL*RYLLPERMLEVSRLASC*EAVVLP*LLPVKFV*KDCQKPRMEKLYSLKVGPGSNGL*QIPSTFQSHRKTGSHTSHLLGQNRHTLSIKQAKKGV*WELQYPGLQCCLTAKLCRRPAIILKGKQ**MS*TLRRMLGCGTACLRM**IRCTQSAYPTLL*KPVLSLGSKEYMLTKPR*L**NVGTCTGL*WHIGTKET*A*VPSEC*L*LMELTPGPCHPVMPS*VCSKVMD*SLRPSVRAPRLLKP*L*QSAGLEFQEPLCQEEPFSQ*MD*AMG*YGSILKIKIQH*RSRM*GM*CLVG*CAL*NQMDLPSSAKQMKLEKSVLAPELEA*CTLGLLV*QKIHLR*FQ*ILQALLLGMCHSSDQDCWGL*GRVVWCSWLGKWMAY*WLVVEDIMLMTLLLLDWL*NQ*RLFIEEELLCFLCLYFMMSALWWLRNKDLMLLRKIVSSG*AACCRRSIAFIKWGFIVLLWCQPIHCQKLH*EESIYLRRNNSFWRDHCILATSSCAPIHV*QTCQSPGKNNQV*ALLP*WLGIWLLENV*HKLLEGIWDK*KRMIW*GSTSFWQRSYSGEPRRLLTMYSSCC*MPREPLYAQPAAFSFISEQRGLHLFLVIRDI*MQEIMWCCSIHLALS*SPPSMAACMRAVYL*PSDLHMLRTSRPRCPLSE*LLMSAKQPVFSPVRP**GY*GPERQQQLWM*KPGQPSLTQMIYPGKGYLSCINRPLLRCWHILILVSPQLACLQE*RCPTLQ*TLCVEPSSSSVSCTLLGRSPSALTLTVDLASRSGVSAVSIQATSLS*FLLWS*RTTFSSGSPQSTSTK*GTLSAPIQ*WSSAPKVLGTKWKC*RPEGSTSPASGPVWWWRRRGPALHSSSPSLSSSKTSGCPRGLSAPLLDQESM*QYVYREPQGLIRLLCMWI*NH*DMTGFVSWNVAPLRVCFSQSLERFYLE*KWLLLILRPKGRLETLTLERFG*TVPIQPAATTPSMIARLFKLIISTLASALEMQLRHSGLGQDTLVLSAGPSSQRPLESVMMHCMWWERWMKHWS*EDYDTTQLILRPRCPGSTEALLNVPCSHGPTCLWWLWNCAALNRKP*IWSH**PTWSWKSITSSLASWLWWTQVSSRSTPEERSRGCTSVIAS*LTS*TPSTWLITC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28310 DNAJC6::LEPR ENSG00000116675.16::ENSG00000116678.20 HEC1A SRR8615275 SRR8639188 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DNAJC6 ENSG00000116675.16 protein_coding + + chr1:65248219-65415871:+ chr1:65254649:+ chr1:65713902-65881554:+ chr1:65720332:+ LEPR ENSG00000116678.20 protein_coding + + chr1:65420652-65641559:+ chr1:65565546:+ chr1:65886335-66107242:+ chr1:66031229:+ chr1:65360814,chr1:65360810 chr1:65540774,chr1:65540767 NA NA chr1:65826497,chr1:65826493 chr1:66006457,chr1:66006450 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNAJC6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.11Mb] 6 6 6 5.14 ONLY_REF_SPLICE YES_LDAS 0.1185 GT 1.3996 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28314 ITM2B::RB1 ENSG00000136156.15::ENSG00000139687.16 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ITM2B ENSG00000136156.15 protein_coding + + chr13:48232612-48270357:+ chr13:48258947:+ chr13:48806748-48844493:+ chr13:48833083:+ RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48379594:+ chr13:48877880-49173572:+ chr13:48953730:+ chr13:48259983,chr13:48259979 chr13:48379455,chr13:48379448 NA NA chr13:48834119,chr13:48834115 chr13:48953591,chr13:48953584 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SpoVG|4-43|2.3e-06 none ["RB1:Oncogene","RB1:OncomapV4_panel","RB1:ArcherDX_panel","RB1:FoundationOne_panel"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.03Mb];NEIGHBORS[33394] 93 49 93 49 ONLY_REF_SPLICE YES_LDAS 1.544 GT 1.6729 AG 1.9219 ENST00000650237.1 1-127 ENST00000267163.6 1333-2787 chr13|+|[2]48256269-48256383[2]|[0]48258936-48258947[2]<==>chr13|+|[0]48379594-48379650[2]|[0]48380053-48380084[1]|[2]48380165-48380241[0]|[1]48381247-48381443[2]|[0]48452993-48453111[1]|[2]48456204-48456349[0]|[1]48459688-48459833[2]|[0]48463731-48463835[2]|[0]48464998-48465111[2]|[0]48465205-48465368[1]|[2]48473360-48473390[2]|[0]48476701-48476843[1]|[2]48477355-48477404[0]|[1]48479998-48480071[2] gacaattgaagaaaatattaaaatctttgaagaagaagaagttgaatttatcagtgtgcctgtcccagagtttgcagatagtgatcctgccaacattgttcatgactttaacaagaaactattaaagCGATACAAACTTGGAGTTCGCTTGTATTACCGAGTAATGGAATCCATGCTTAAATCAGAAGAAGAACGATTATCCATTCAAAATTTTAGCAAACTTCTGAATGACAACATTTTTCATATGTCTTTATTGGCGTGCGCTCTTGAGGTTGTAATGGCCACATATAGCAGAAGTACATCTCAGAATCTTGATTCTGGAACAGATTTGTCTTTCCCATGGATTCTGAATGTGCTTAATTTAAAAGCCTTTGATTTTTACAAAGTGATCGAAAGTTTTATCAAAGCAGAAGGCAACTTGACAAGAGAAATGATAAAACATTTAGAACGATGTGAACATCGAATCATGGAATCCCTTGCATGGCTCTCAGATTCACCTTTATTTGATCTTATTAAACAATCAAAGGACCGAGAAGGACCAACTGATCACCTTGAATCTGCTTGTCCTCTTAATCTTCCTCTCCAGAATAATCACACTGCAGCAGATATGTATCTTTCTCCTGTAAGATCTCCAAAGAAAAAAGGTTCAACTACGCGTGTAAATTCTACTGCAAATGCAGAGACACAAGCAACCTCAGCCTTCCAGACCCAGAAGCCATTGAAATCTACCTCTCTTTCACTGTTTTATAAAAAAGTGTATCGGCTAGCCTATCTCCGGCTAAATACACTTTGTGAACGCCTTCTGTCTGAGCACCCAGAATTAGAACATATCATCTGGACCCTTTTCCAGCACACCCTGCAGAATGAGTATGAACTCATGAGAGACAGGCATTTGGACCAAATTATGATGTGTTCCATGTATGGCATATGCAAAGTGAAGAATATAGACCTTAAATTCAAAATCATTGTAACAGCATACAAGGATCTTCCTCATGCTGTTCAGGAGACATTCAAACGTGTTTTGATCAAAGAAGAGGAGTATGATTCTATTATAGTATTCTATAACTCGGTCTTCATGCAGAGACTGAAAACAAATATTTTGCAGTATGCTTCCACCAGGCCCCCTACCTTGTCACCAATACCTCACATTCCTCGAAGCCCTTACAAGTTTCCTAGTTCACCCTTACGGATTCCTGGAGGGAACATCTATATTTCACCCCTGAAGAGTCCATATAAAATTTCAGAAGGTCTGCCAACACCAACAAAAATGACTCCAAGATCAAGAATCTTAGTATCAATTGGTGAATCATTCGGGACTTCTGAGAAGTTCCAGAAAATAAATCAGATGGTATGTAACAGCGACCGTGTGCTCAAAAGAAGTGCTGAAGGAAGCAACCCTCCTAAACCACTGAAAAAACTACGCTTTGATATTGAAGGATCAGATGAAGCAGATGGAAGTAAACATCTCCCAGGAGAGTCCAAATTTCAGCAGAAACTGGCAGAAATGACTTCTACTCGAACACGAATGCAAAAGCAGAAAATGAATGATAGCATGGATACCTCAAACAAGGAAGAGAAATGA TIEENIKIFEEEEVEFISVPVPEFADSDPANIVHDFNKKLLKRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPKKKGSTTRVNSTANAETQATSAFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFKRVLIKEEEYDSIIVFYNSVFMQRLKTNILQYASTRPPTLSPIPHIPRSPYKFPSSPLRIPGGNIYISPLKSPYKISEGLPTPTKMTPRSRILVSIGESFGTSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIEGSDEADGSKHLPGESKFQQKLAEMTSTRTRMQKQKMNDSMDTSNKEEK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 28316 DHX36::KCNAB1 ENSG00000174953.14::ENSG00000169282.18 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 135 FALSE NA FALSE NA DHX36 ENSG00000174953.14 protein_coding - - chr3:154272546-154324487:- chr3:154324174:- chr3:153990335-154042276:- chr3:154041963:- KCNAB1 ENSG00000169282.18 protein_coding + + chr3:156037701-156539138:+ chr3:156531409:+ chr3:155755490-156256927:+ chr3:156249198:+ chr3:154319265,chr3:154319284 chr3:156528762,chr3:156528743 NA NA chr3:154037054,chr3:154037073 chr3:156246551,chr3:156246532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_14|156-194|1.6^RsgA_GTPase|187-243|0.00021^DEAD-PARTIAL|212-243~|1.3e-17^PhoH-PARTIAL|212-243~|7.1e-06^AAA_19-PARTIAL|213-243~|1.7e-06^nSTAND3-PARTIAL|214-243~|2e-06^AAA_23|217-238|2.3e-05^ATPase-PARTIAL|221-243~|1.3e-05^AAA_22-PARTIAL|222-243~|4.8e-09^AAA_14-PARTIAL|223-243~|0.00031^AAA_34-PARTIAL|223-243~|0.00024 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.71Mb] 72 5 72 5 ONLY_REF_SPLICE YES_LDAS 0.8373 GT 1.3996 AG 1.9219 ENST00000308361.10 1-243 ENST00000618897.4 731-915 chr3|-|[2]154324174-154324416[0]<==>chr3|+|[1]156531409-156531501[0]|[1]156536545-156536546[2]|[0]156536658-156536747[2] atgagttatgactaccatcagaactggggccgtgatgggggtccccgcagctccggtgggggctatggaggggggccagcagggggtcatggaggtaaccgaggctccggaggaggcggcggcggcggagggggtggtcgaggcggcaggggccggcatcccgggcacctgaaaggccgcgaaatcggcatgtggtacgcgaaaaaacaggggcagaagaacaaggaagcggagaggcaagagCGTGGTGCCTGAGAAATGAAGGTGTGAGTTCTGTGCTCCTGGGATCATCCACTCCTGAACAACTCATTGAAAACCTTGGTGCCATTCAGGCAACTGTTCTCCCAAAGATGACATCACATGTGGTAAATGAGATTGATAACATACTGCGCAACAAGCCCTACAGCAAGAAGGACTATAGATCATAA MSYDYHQNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGGGGGRGGRGRHPGHLKGREIGMWYAKKQGQKNKEAERQERGA*EMKV*VLCSWDHPLLNNSLKTLVPFRQLFSQR*HHMW*MRLITYCATSPTARRTIDH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28317 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 133 TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9718475:+ chr3:9745510-9771592:+ chr3:9760159:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];LOCAL_REARRANGEMENT:+:[1821] 55 73 55 51.57 ONLY_REF_SPLICE YES_LDAS 1.1587 GT 1.7968 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28318 NBEAL1::RUFY4 ENSG00000144426.19::ENSG00000188282.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 136 FALSE NA FALSE NA NBEAL1 ENSG00000144426.19 protein_coding + + chr2:203014608-203226378:+ chr2:203166297:+ chr2:203879331-204091101:+ chr2:204031020:+ RUFY4 ENSG00000188282.13 protein_coding + + chr2:218034960-218090584:+ chr2:218072374:+ chr2:218899683-218955307:+ chr2:218937097:+ chr2:203167157,chr2:203167153 chr2:218072070,chr2:218072063 NA NA chr2:204031880,chr2:204031876 chr2:218936793,chr2:218936786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4704|66-124|2.1^DUF4704|239-324|0.37^Laminin_G_3|387-412|0.74^Laminin_G_3|607-742|1.5e-05^WD40|773-785|7^DUF4704|888-1202|1.7e-36^DUF4800|1609-1862|2.6e-132^PH_BEACH|1923-2008|1.9e-24^Beach|2034-2313|4.3e-128^NBCH_WD40|2376-2690|7.6e-48^WD40|2435-2454|0.28^WD40|2463-2497|5.8e-07^WD40|2512-2547|1.8e-06^WD40|2659-2681|2 RUN-PARTIAL|~154-164|8.9e-15^FapA|399-491|0.0058^AAA_11|402-493|0.0011^UPF0242|409-513|0.0063^Phage_GPO|411-496|0.0084^AAA_23|414-534|0.0021^TPR_MLP1_2|419-532|0.00031^Exonuc_VII_L|422-535|0.0051^CCDC22_CC|429-533|4.9e-06^FH2|430-500|0.00014^GAS|432-529|0.00033^LCD1|433-518|0.0046^DUF4407|443-508|0.00016^HAUS2|463-532|8.1e-06^RUN|505-535|1.2 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:14.81Mb] 39 14 39 14 ONLY_REF_SPLICE YES_LDAS 0.5763 GT 1.4566 AG 1.8892 ENST00000683969.1 1-5863 ENST00000374155.7 154-1824 chr2|+|[0]203016385-203016435[2]|[0]203041765-203041856[1]|[2]203049814-203049975[1]|[2]203056427-203056508[2]|[0]203057326-203057453[1]|[2]203068393-203068475[0]|[1]203077752-203077837[2]|[0]203083219-203083525[0]|[1]203084463-203084569[2]|[0]203097547-203097633[2]|[0]203099629-203099712[2]|[0]203107420-203107518[2]|[0]203107608-203108188[1]|[2]203110150-203110282[2]|[0]203111979-203112098[2]|[0]203113015-203113318[0]|[1]203115985-203116070[2]|[0]203122254-203122343[2]|[0]203125352-203125520[0]|[1]203125960-203126093[2]|[0]203126557-203126716[0]|[1]203126824-203126926[1]|[2]203127781-203127937[2]|[0]203130318-203130476[2]|[0]203131973-203132132[0]|[1]203133058-203133146[2]|[0]203135677-203136252[2]|[0]203136599-203136774[1]|[2]203138162-203138315[2]|[0]203138620-203138748[2]|[0]203144600-203144905[2]|[0]203145011-203145160[2]|[0]203148991-203149148[1]|[2]203151465-203151589[0]|[1]203157699-203157825[1]|[2]203166149-203166297[0]<==>chr2|+|[0]218072374-218072499[2]|[0]218072779-218072885[1]|[2]218073243-218073386[1]|[2]218073816-218073945[2]|[0]218075093-218075740[2]|[0]218076427-218076533[1]|[2]218083110-218083256[1]|[2]218089252-218089362[1]|[2]218089687-218089837[2] atggcatccagagagaggctctttgaactttggatgctttattgtacaaagaaagatccagattacctgaagctgtggttggacacttttgtttctagctatgaacaatttttagacgttgactttgaaaagctgcctaccagggtagatgatatgcctccaggaatatctctgcttcctgataatattctgcaggttctgaggatccagcttctacagtgtgttcagaaaatggcagatgggttagaggaacaacagcaagccttgtcaattttgcttgtcaagttcttcattattctttgcagaaatctatcaaatgtggaagaaattgggacttgctcgtacattaattatgtcatcaccatgacaacactctatattcagcaattaaaaagcaaaaaaaaagagaaggaaatggcagatcagacatgtattgaagaatttgtgatccacgcattggcattttgtgaaagcttatatgatccatatcggaattggagacatagaatttcaggacgaatccttagtactgtggaaaagagcagacagaaatataaaccagcttctctcacagtggaattcgtccctttcttttatcaatgttttcaggaaagtgaacatctcaaggaaagtcttaaatgttgcttattgcatctctttggagccattgtagccggtgggcagaggaatgctttgcaagcaatttctccagccactatggaagttcttatgcgagtattggcagattgtgattcctgggaggatggagatcctgaagaagtgggtaggaaggcagaactaactctgaagtgccttacagaagtggtacatatccttctcagtagcaactctgatcagcgtcaagtggaaaccagtactattctggagaactattttaaattgctaaattcagatcattcagctttacctaatcaaaggaggtccagacagtgggaaaaccgatttattgctctacagatcaaaatgctgaataccatcacagccatgttagattgtacagatagacctgttcttcaggccatttttcttaacagcaattgctttgaacatctcatacgactgctacagaactgcaagctatttttaaatgctaacaataaggtggcagacaagaacgagaaagaccttgccaacaaattactgacagaaatgaatgaggaccaggtgtttcagggacaattggattgtttggccatatcaaccattcaggctttgaccgcagtaatgaacaaatctccagctgctaaggaagtatttaaagaaagaattggttatacacatatgcttgaagtattaaaatccctgggtcagccaccactggaattacttaaagaacttatgaatatggctgtagagggtgaccacacttcagttgggattttgggcattagtaatgtccaacctctcttgcttcttatccagtggcttccagaactacaatcccatgacctgcaaatcttcatctctgattggctgaaaagaatttgttgtattaatagacagagtcgaactacttgtgtcaatgcaaacatggggattagaatcattgaaacccttgacttgcattcttccctccatcaaacttgtgctgagaacttgattgcaatccatggttccttggggagtcagtcagtgagctcagaagaaatccgtcgactactgagattgctgagagtggatgaatctgagtctgttcacccttatgtcactcccgtgactcgagcaatcctgacaatggcccgaaaactaagtctagagagtgccctccagtatttcaatttgtcacatagtatggcaggaatttctgtgcctcccatacagaaatggccagggtctgccttttctttcagtgcttggttttgcttagaccaggatcagttgactcttggcattgctaacaaaggagggaaaaggaaacaattgtacagtttttttacaggaagtggcatgggttttgaagcctttattacccattcaggtatgttggtcgtggcagtgtgcacaaaaagagaatatgcaacggttatgcttcctgaccacagtttctgtgattccctctggcacaacataactgttgtccacatgcctggaaaaaggccttttggtcagagcttcgtctatatctatgacaatggacaacagaaggtttctgcccctctcagatttcctgccatgaatgaaccctttacttcctgttgcattggttcagctgggcaaagaaccaccactcctccaccatcccaaatcccagatccacctttctcttctcccattacccctcatcggacatcatttggtggaattctgtcatcagcctcctggggaggaacaattgaaaaatcaaaattgattaccaaattgatatcagctggaacccaagacagtgaatgggggtgtcccacatctctggagggtcagctaggatctgttatcatcttttatgaaccactacaacctcctcaggtgaaggcattatatttagcaggtccaaattgtttaagcccttggaagtgtcaagagtctgacatggccgacctgcctggtaacatccttctttactacacagcaaaggcctgcaaaaattcaatctgtcttgatttatctactaattgtttgcatggaagattaacaggaaacaaagtagtgaactgggacattaaggatatcataaactgcataggtgggttaaatgtactctttcctttattggaacaaatcagccactttagtgaaggacagattcctgaagaaaagaatgaaagcacagttcctgaatcagtaacacctgttgaaggagattggctcgtatggacttccacaaaggcctcagagtcaagactagagagaaacctagttgcaacatttatcttaattgtgaaacattttattcagagacatcctatcaaccagggcaatcttattcactcccatggagttgcaactcttggtgctttacttcagaaggtgccaagcaccttgatggatgttaatgtgttgatggcagttcagttactaattgaacaagtatcattagagaaaaatatgcagctcctgcaacaaatgtatcaatatttactctttgactttcgtatttggaaccgtggagattttccctttcgaatcggtcacatacagtatctttcaaccatcattaaagacagcaggagagttttccgaaagaagtatggtgtgcagtttctcctagatacacttaggatttattatgggaatggttgtaaatataatgaactatctctagatgatattcgaacaataaggacttctttgtatggactaattaaatattttctgtgcaaaggtggatctcatgaagagatacaaagtattatggggtacatagctgctactaatgaagaagaacagctctttggaattttggacgtgctcttcagtctcctacgtaccagcccaaccagaggtcagcttttcttactgctttttgaaccaggaaatgctgacatactgtacgcattgctcttaaatcagaagtactctgacagactaagagaaatcatttttaagattatggaacaaatgttgaaatgcacgaacgtttatgagcgtagtaaacaacatattcgactcagagaagttggctactcgggactgggactccttcttaatgaagcacttgttaatacttctcttattaaaaacctcacccatcaaatcataaatacagatcctgttattaatttcaaagatctactatctgtggtatatatatctcacagagcacatataaatgttagagtggccatctgcagaaaggttttgcaaattttgcagttccagccagatgcagcacatcaaatatcacagcaagtgggttggcaagacaccttagttaggctttttttaaaagcaaaatttgaaaacggaaatactcttcataagcacagtagagctgttttaatgaaagacaatgataaaaatatgtcaactgaagataccaagaagaactctgatgaaaaaacagatgaggaaaaaatcacctcttttgcctcagctaatgtgtcttcggatcagtggagtttggaggatagacactctttagactcaaacacaccattatttccagaagatagctctgtgggagaattgtctttcaaatcagagaatcaagaggaattctggcatagtaacccttcacatttgagtttagacctcagtggaattgactcatgtgaaatgagtgatagtggaagtcaagtgccagacagtctgcctagcacaccatccccagtagagtctactaaatcgttttctgtgcactctgacagagaaagcagcatcacaaatgatatgggctttagtgatgacttctctttacttgaaagccaagagagatgtgaggaggagcttcttcaattactgacacatattttgaattatgtaatgtgtaagggactagaaaagtctgatgatgatacttggattgaacgaggacaagtgttttcagcactaagtaaaccaggaatatccagtgaactacttcgaccatcagatgaaataaaactaactttgctacaaaagatgttagaatgggcaatctcagaaaacagagaagcaaaaactaatccagtaactgctgaaaacgccttccgactagtgctgatcatacaggactttcttcagtcagagggactagttaattcaaacatgtggaccgagaagcttttagaggatatgatgctgctctttgactgtctgtcagtctgctattctgaaagtccagtatgggtaaaactctctcaaattcagatccagttgcttctaggattcattggaaggggtaatttgcaggtttgtgcaatggcatcagctaagctaaatacccttcttcagaccaaagtgattgaaaatcaggatgaagcatgttacattttagggaagctggaacatgttctaagtcaatcaatcaaggaacagactgaaatctactcatttctgattccccttgttcgtaccctggtttccaaaatttatgagcttctcttcatgaacttgcacctaccttctttaccttttaccaatggtagctcctcattttttgaagattttcaagaatattgtaattcaaatgaatggcaagtttacattgaaaaatatattgtaccttatatgaagcagtatgaagctcatacattttacgatggtcatgagaacatggcactttattggaaggattgttatgaagctttaatggtaaatatgcataaacgagaccgggaaggaggggaaagcaagctcaaatttcaggagctgtttgtggagccatttaatcgaaaagcacgccaagagaacctgaggtataataatatgcttaaacaacttagcagtcaacagttagccactcttagacgctggaaagcaatacagctctatcttacatgtgaaaggggaccttgggctaaaaggaaacagaatccaattcactggaagctagctaatgtagagaattattcccgcatgagacttaagctggtaccgaattataatttcaaaacccatgaggaagctagtgccttgagagataatctgggtatccaacactcacagccttccagtgatacattgcttttggaagtagtgaaacaagtaaaagttagtgatatggtggaggataaattagaccttcctgaagaggatataacagctagagtaaatgttgatgagaaagaagaacaggatcaaaaagaaaaattggtattgatggaagactgtgaactcattacaataattgatgtaattcctggcagattagaaatcactactcaacacatttacttctatgatggcagcattgaaaaagaagatgTTTGACCAGAAAGAGCAGAAGAGCTTCCTGGGGCCTCGGAAGGATTACTGGGACTTTCTCTGCACTGCCCTACGACGGCAGCGGGGAAACATGGAGCCAATCCACTTTGTCCGTTCCCAGGACAAGTTGAAGACCCCTCTGGGGAAAGGCCGTGCCTTCATCCGCTTCTGCCTGGCCCGTGGGCAGCTGGCTGAGGCCCTGCAGCTTTGCCTCCTGAACTCAGAGCTCACCAGGGAATGGTATGGACCCCGGAGCCCTCTGCTCTGCCCAGAACGCCAAGAAGACATCCTGGACTCTCTCTATGCTCTCAATGGGGTGGCCTTCGAGTTGGACCTCCAGCAGCCAGACCTGGATGGAGCCTGGCCCATGTTCTCAGAGTCACGCTGCTCCAGTTCCACCCAAACCCAGGGAAGGAGACCCAGAAAAAACAAAGATGCCCCAAAGAAGGTGCCTCTGCCCTGCCTTCACTCTGAGTTGCCTCTTCCCCATCTCCTTGGCATCCTCAAGATCCCAGCCGCATATGGAGGGCCTGAAAATGTCCAGATTGAGGACTCACACACCAGTCAAGCCATCTGTCTGCAAGATGCACCCAGTGGACAGCAGCTGGCAGGGCTTCCCAGGTCCCAGCAACAAAGGCATCTTCCTTTCTTTTTGGAAAAGAAGGGGGAAAGTTCCAGGAAACATAGGTACCCCCAGAGCATGTGGGAGCCAGAAGGGAAGGAGCTTCAGCTAGACCAGGAGGAAAGAGCCCCATGGATTGAGATCTTCCTGGGGAACTCAACACCCAGCACCCAGGGACAGGGGAAGGGGGCTATGGGCACTCAGAAGGAGGTGATAGGGATGGAGGCTGAGGTCACAGGGGTTCTGCTGGTTGCAGAGGGTCAGAGAACAACAGAGGGGACTCACAAAAAGGAAGCAGAGTGGAGTCACGTCCAGAGGCTGCTGATGCCCAGCCCCAGAGGGGCTGTAGAGGGAGCAGTATCAGGGAGCAGGCAGGGGTCGGGGGGCTCTAGCATCCTGGGGGAGCCCTGGGTCCTTCAGGGACACGCAACAAAGGAAGACTCTACCGTGGAGAATCCACAAGTGCAAACAGAAGTGACCCTTGTGGCCAGAAGGGAGGAGCAAGCCGAGGTGTCCCTGCAGGACGAGATCAAGAGCCTCAGACTTGGGCTCCGGAAGGCTGAGGAGCAGGCCCAGCGCCAGGAGCAGCTGCTGAGGGAGCAGGAGGGGGAGCTGCAGGCACTTCGGGAGCAGCTCAGCAGGTGTCAGGAAGAGAGAGCCGAGCTGCAGGCACAGCTGGAGCAGAAGCAACAGGAGGCTGAGAGGAGGGATGCCATGTACCAGGAGGAGCTTGGAGGGCAGCGGGACTTGGTCCAGGCCATGAAGAGGCGGGTGTTGGAACTGATCCAAGAGAAGGACCGCCTGTGGCAGAGGCTCCAGCATCTCTCTTCCATGGCTCCCGAGTGCTGTGTGGCCTGTAGCAAGATCTTTGGCCGATTTTCTCGGCGGTATCCATGCAGTGCTAGGACCAGCCTTGGGAGAGAGGAAAGTGAGCCACCAGGAGAAGCTGCCATGTGGAGGTGGAGGCTCTGGAGGGGTCGGGCATCAGGACACCCTTCAGGAGAGGGGAGACCTCCTGAGACAAACCAAGGGCATTCCACTGGGAGATGA MASRERLFELWMLYCTKKDPDYLKLWLDTFVSSYEQFLDVDFEKLPTRVDDMPPGISLLPDNILQVLRIQLLQCVQKMADGLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINYVITMTTLYIQQLKSKKKEKEMADQTCIEEFVIHALAFCESLYDPYRNWRHRISGRILSTVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKESLKCCLLHLFGAIVAGGQRNALQAISPATMEVLMRVLADCDSWEDGDPEEVGRKAELTLKCLTEVVHILLSSNSDQRQVETSTILENYFKLLNSDHSALPNQRRSRQWENRFIALQIKMLNTITAMLDCTDRPVLQAIFLNSNCFEHLIRLLQNCKLFLNANNKVADKNEKDLANKLLTEMNEDQVFQGQLDCLAISTIQALTAVMNKSPAAKEVFKERIGYTHMLEVLKSLGQPPLELLKELMNMAVEGDHTSVGILGISNVQPLLLLIQWLPELQSHDLQIFISDWLKRICCINRQSRTTCVNANMGIRIIETLDLHSSLHQTCAENLIAIHGSLGSQSVSSEEIRRLLRLLRVDESESVHPYVTPVTRAILTMARKLSLESALQYFNLSHSMAGISVPPIQKWPGSAFSFSAWFCLDQDQLTLGIANKGGKRKQLYSFFTGSGMGFEAFITHSGMLVVAVCTKREYATVMLPDHSFCDSLWHNITVVHMPGKRPFGQSFVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSSPITPHRTSFGGILSSASWGGTIEKSKLITKLISAGTQDSEWGCPTSLEGQLGSVIIFYEPLQPPQVKALYLAGPNCLSPWKCQESDMADLPGNILLYYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQIPEEKNESTVPESVTPVEGDWLVWTSTKASESRLERNLVATFILIVKHFIQRHPINQGNLIHSHGVATLGALLQKVPSTLMDVNVLMAVQLLIEQVSLEKNMQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGNGCKYNELSLDDIRTIRTSLYGLIKYFLCKGGSHEEIQSIMGYIAATNEEEQLFGILDVLFSLLRTSPTRGQLFLLLFEPGNADILYALLLNQKYSDRLREIIFKIMEQMLKCTNVYERSKQHIRLREVGYSGLGLLLNEALVNTSLIKNLTHQIINTDPVINFKDLLSVVYISHRAHINVRVAICRKVLQILQFQPDAAHQISQQVGWQDTLVRLFLKAKFENGNTLHKHSRAVLMKDNDKNMSTEDTKKNSDEKTDEEKITSFASANVSSDQWSLEDRHSLDSNTPLFPEDSSVGELSFKSENQEEFWHSNPSHLSLDLSGIDSCEMSDSGSQVPDSLPSTPSPVESTKSFSVHSDRESSITNDMGFSDDFSLLESQERCEEELLQLLTHILNYVMCKGLEKSDDDTWIERGQVFSALSKPGISSELLRPSDEIKLTLLQKMLEWAISENREAKTNPVTAENAFRLVLIIQDFLQSEGLVNSNMWTEKLLEDMMLLFDCLSVCYSESPVWVKLSQIQIQLLLGFIGRGNLQVCAMASAKLNTLLQTKVIENQDEACYILGKLEHVLSQSIKEQTEIYSFLIPLVRTLVSKIYELLFMNLHLPSLPFTNGSSSFFEDFQEYCNSNEWQVYIEKYIVPYMKQYEAHTFYDGHENMALYWKDCYEALMVNMHKRDREGGESKLKFQELFVEPFNRKARQENLRYNNMLKQLSSQQLATLRRWKAIQLYLTCERGPWAKRKQNPIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGIQHSQPSSDTLLLEVVKQVKVSDMVEDKLDLPEEDITARVNVDEKEEQDQKEKLVLMEDCELITIIDVIPGRLEITTQHIYFYDGSIEKEDV*PERAEELPGASEGLLGLSLHCPTTAAGKHGANPLCPFPGQVEDPSGERPCLHPLLPGPWAAG*GPAALPPELRAHQGMVWTPEPSALPRTPRRHPGLSLCSQWGGLRVGPPAARPGWSLAHVLRVTLLQFHPNPGKETQKKQRCPKEGASALPSL*VASSPSPWHPQDPSRIWRA*KCPD*GLTHQSSHLSARCTQWTAAGRASQVPATKASSFLFGKEGGKFQET*VPPEHVGARREGASARPGGKSPMD*DLPGELNTQHPGTGEGGYGHSEGGDRDGG*GHRGSAGCRGSENNRGDSQKGSRVESRPEAADAQPQRGCRGSSIREQAGVGGL*HPGGALGPSGTRNKGRLYRGESTSANRSDPCGQKGGASRGVPAGRDQEPQTWAPEG*GAGPAPGAAAEGAGGGAAGTSGAAQQVSGRESRAAGTAGAEATGG*EEGCHVPGGAWRAAGLGPGHEEAGVGTDPREGPPVAEAPASLFHGSRVLCGL*QDLWPIFSAVSMQC*DQPWERGK*ATRRSCHVEVEALEGSGIRTPFRRGETS*DKPRAFHWEM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28319 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 134 TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9725949:+ chr3:9745510-9771592:+ chr3:9767633:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];LOCAL_REARRANGEMENT:+:[1821] 37 43 37 12.05 ONLY_REF_SPLICE YES_LDAS 0.5333 GT 1.7968 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28320 MSI2::SCPEP1 ENSG00000153944.12::ENSG00000121064.13 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 137 FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ SCPEP1 ENSG00000121064.13 protein_coding + + chr17:56978129-57006768:+ chr17:57000855:+ chr17:55055490-55084129:+ chr17:55078216:+ chr17:57288239,chr17:57288238 chr17:57000078,chr17:57000068 NA NA chr17:55365600,chr17:55365599 chr17:55077439,chr17:55077429 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_7|22-87|3.3e-07^RRM_1|24-91|1.1e-20^RRM_3|25-48|0.041^SET1_RBD|36-58|0.0009^DUF4651|36-48|0.0052^Nup35_RRM_2|38-74|0.0034^PHM7_cyt|50-89|0.019^CSD|59-71|0.083^NID|66-96|0.047^RRM_7|110-177|5.2e-07^PHM7_cyt|110-180|0.00015^RRM_1|112-178|3.7e-18^Nup35_RRM_2|112-162|0.00092^RRM_3|115-173|0.005^DUF4651|121-147|0.02^SET1_RBD|125-137|0.081^CSD|145-179|0.00055^NID|155-188|0.00047 Peptidase_S10-PARTIAL|~43-131|1.3e-30^UPF0114-PARTIAL|~43-82|1e-07 ["MSI2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.25Mb] 32 6 32 6 ONLY_REF_SPLICE YES_LDAS 0.4131 GT 1.5656 AG 1.8062 ENST00000284073.7 1-312 ENST00000573239.1 43-407 chr17|+|[0]57256743-57256804[1]|[2]57257098-57257138[0]|[1]57257466-57257547[1]|[2]57258270-57258354[2]|[0]57262151-57262192[2]<==>chr17|+|[1]57000855-57000992[0]|[1]57002018-57002181[2]|[0]57006173-57006235[2] atggaggcaaatgggagccaaggcacctcgggcagcgccaacgactcccagcacgaccccggtaaaatgtttatcggtggactgagctggcagacctcaccagatagccttagagactattttagcaaatttggagaaattagagaatgtatggtcatgagagatcccactacgaaacgctccagaggcttcggtttcgtcacgttcgcagacccagcaagtgtagataaagtattaggtcagccccaccatgagttagattccaagacgattgaccccaaagttgcatttcctcgtcgagcgcaacccaagGCCAGGCTACCAACGTCTTTGTGAACATGGAGGAGGACTTCATGAAGCCAGTCATTAGCATTGTGGACGAGTTGCTGGAGGCAGGGATCAACGTGACGGTGTATAATGGACAGCTGGATCTCATCGTAGATACCATGGGTCAGGAGGCCTGGGTGCGGAAACTGAAGTGGCCAGAACTGCCTAAATTCAGTCAGCTGAAGTGGAAGGCCCTGTACAGTGACCCTAAATCTTTGGAAACATCTGCTTTTGTCAAGTCCTACAAGAACCTTGCTTTCTACTGGATTCTGAAAGCTGGTCATATGGTTCCTTCTGACCAAGGGGACATGGCTCTGAAGATGATGAGACTGGTGACTCAGCAAGAATAG MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKARLPTSL*TWRRTS*SQSLALWTSCWRQGST*RCIMDSWISS*IPWVRRPGCGN*SGQNCLNSVS*SGRPCTVTLNLWKHLLLSSPTRTLLSTGF*KLVIWFLLTKGTWL*R**DW*LSKN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28321 PARD3::ENSG00000244676 ENSG00000148498.17::ENSG00000244676.5 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34516979:- chr10:34398488-35104253:- chr10:34805907:- ENSG00000244676 ENSG00000244676.5 lncRNA + + chr21:17793488-17810845:+ chr21:17810495:+ chr21:19165805-19183162:+ chr21:19182812:+ chr10:34477356,chr10:34477358 chr21:17803090,chr21:17803088 NA NA chr10:34766284,chr10:34766286 chr21:19175407,chr21:19175405 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 18 16 18 16 ONLY_REF_SPLICE YES_LDAS 0.3697 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28322 IQGAP3::BCAN-AS2 ENSG00000183856.11::ENSG00000229953.1 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA IQGAP3 ENSG00000183856.11 protein_coding - - chr1:156525405-156572604:- chr1:156560934:- chr1:156495197-156542396:- chr1:156530726:- BCAN-AS2 ENSG00000229953.1 lncRNA - - chr1:156646507-156661424:- chr1:156647154:- chr1:156616299-156631216:- chr1:156616946:- chr1:156559496,chr1:156559502 chr1:156654971,chr1:156654974 NA NA chr1:156529288,chr1:156529294 chr1:156624763,chr1:156624766 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 3 17 3 ONLY_REF_SPLICE YES_LDAS 0.2174 GT 1.7465 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28323 EVPL::SRP68 ENSG00000167880.8::ENSG00000167881.15 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 138 FALSE NA FALSE NA EVPL ENSG00000167880.8 protein_coding - - chr17:76004502-76027306:- chr17:76027101:- chr17:74000583-74023387:- chr17:74023182:- SRP68 ENSG00000167881.15 protein_coding - - chr17:76038775-76072517:- chr17:76050526:- chr17:74034856-74068598:- chr17:74046607:- chr17:76024419,chr17:76024426,chr17:76024423 chr17:76054837,chr17:76054838,chr17:76054838 NA NA chr17:74020500,chr17:74020507,chr17:74020504 chr17:74050918,chr17:74050919,chr17:74050919 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Spectrin_4-PARTIAL|38-98~|3.5e-09 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[11323] 17 9 17 9 ONLY_REF_SPLICE YES_LDAS 0.2827 GT 1.5656 AG 1.6895 ENST00000301607.8 1-98 ENST00000307877.7 979-1884 chr17|-|[1]76027101-76027198[0]<==>chr17|-|[2]76039706-76039933[0]|[2]76040419-76040474[1]|[0]76040903-76040978[0]|[2]76043829-76043958[2]|[1]76045292-76045386[0]|[2]76046038-76046194[2]|[1]76047906-76047970[0]|[2]76050428-76050526[0] atgttcaaggggctgagcaaaggctcccaggggaaggggtcccccaagggctcccccgccaaggggtcccccaaaggctcccccagcaggcacagccgGCTGAAAGCGAAGAAACTAAGGAGCGCCTGTTTGAATCAATGCTCAGCGAGTGTCGGGACGCCATCCAGGTGGTTCGGGAGGAGCTCAAGCCAGATCAGAAACAGAGAGATTATATCCTTGAAGGAGAGCCAGGGAAGGTGTCTAATCTTCAATACTTGCATAGCTACCTGACTTACATCAAGCTATCAACGGCAATCAAGCGTAATGAGAACATGGCCAAAGGTCTGCAGAGGGCTCTGCTGCAGCAGCAGCCAGAGGATGACAGCAAGCGCTCACCCCGGCCCCAGGACCTGATCCGACTCTATGACATCATCTTACAGAATCTGGTGGAATTGCTCCAGCTTCCTGGTTTAGAGGAAGACAAAGCCTTCCAGAAAGAGATAGGCCTCAAGACTCTGGTGTTCAAAGCTTACAGGTGTTTTTTCATTGCTCAGTCCTATGTGCTGGTGAAGAAGTGGAGCGAAGCCCTTGTCCTGTATGACAGAGTCCTGAAATATGCAAATGAAGTAAATTCTGATGCTGGCGCCTTCAAGAACAGCCTAAAGGACCTGCCTGATGTGCAAGAGCTCATCACTCAAGTGCGGTCAGAGAAGTGCTCCCTGCAGGCCGCAGCCATCCTTGATGCAAACGACGCTCATCAAACAGAGACCTCCTCCTCCCAAGTCAAGGACAATAAGCCTCTGGTTGAACGGTTTGAGACATTCTGCCTGGACCCTTCCCTTGTCACCAAGCAAGCCAACCTTGTGCACTTCCCACCAGGCTTCCAGCCCATTCCCTGCAAGCCTTTGTTCTTTGACCTGGCCCTCAACCATGTGGCTTTCCCACCCCTTGAGGACAAGTTGGAACAGAAGACCAAGAGTGGCCTCACTGGATACATCAAGGGCATCTTTGGATTCAGGAGCTAA MFKGLSKGSQGKGSPKGSPAKGSPKGSPSRHSRLKAKKLRSACLNQCSASVGTPSRWFGRSSSQIRNREIISLKESQGRCLIFNTCIAT*LTSSYQRQSSVMRTWPKVCRGLCCSSSQRMTASAHPGPRT*SDSMTSSYRIWWNCSSFLV*RKTKPSRKR*ASRLWCSKLTGVFSLLSPMCW*RSGAKPLSCMTES*NMQMK*ILMLAPSRTA*RTCLMCKSSSLKCGQRSAPCRPQPSLMQTTLIKQRPPPPKSRTISLWLNGLRHSAWTLPLSPSKPTLCTSHQASSPFPASLCSLTWPSTMWLSHPLRTSWNRRPRVASLDTSRASLDSGA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma OVARY,CERVIX no_match 74019373,74023182 FALSE,TRUE 74041467,74063411 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28326 TBCB::WDR62 ENSG00000105254.12::ENSG00000075702.19 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 139 FALSE NA FALSE NA TBCB ENSG00000105254.12 protein_coding + + chr19:36114289-36125947:+ chr19:36121718:+ chr19:36605191-36616849:+ chr19:36612620:+ WDR62 ENSG00000075702.19 protein_coding + + chr19:36054649-36105108:+ chr19:36099399:+ chr19:36545551-36596010:+ chr19:36590301:+ chr19:36124562,chr19:36124562,chr19:36124560 chr19:36098168,chr19:36097650,chr19:36098163 NA NA chr19:36615464,chr19:36615464,chr19:36615462 chr19:36589070,chr19:36588552,chr19:36589065 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ubiquitin_2|10-92|2.3e-32^CAP_GLY|161-185|0.004^CAP_GLY|220-265|1.6e-23^RSV_NS2|232-274|2.2e-05 none ["DepMap2023"];INTRACHROMOSOMAL[chr19:0.01Mb];LOCAL_REARRANGEMENT:+:[9183] 14 5 14 4.12 ONLY_REF_SPLICE YES_LDAS 0.197 GT 1.9656 AG 1.8892 ENST00000651435.1 1-547 ENST00000401500.7 2521-4572 chr19|+|[0]36115561-36115674[2]|[0]36116041-36116184[2]|[0]36120710-36120806[0]|[1]36121527-36121718[0]<==>chr19|+|[0]36099399-36099617[2]|[0]36100748-36100875[1]|[2]36101214-36101317[0]|[1]36101664-36101774[0]|[1]36102014-36102151[0]|[1]36102737-36102851[1]|[2]36102948-36103074[2]|[0]36103156-36103207[0]|[1]36103343-36103981[0]|[1]36104518-36104675[2]|[0]36104768-36105028[2] atggaggtgacgggggtgtcggcacccacggtgaccgttttcatcagcagctccctcaacaccttccgctccgagaagcgatacagccgcagcctcaccatcgctgagttcaagtgtaaactggagttgctggtgggcagccctgcttcctgcatggaactggagctgtatggagttgacgacaagttctacagcaagctggatcaagaggatgcgctcctgggctcctaccctgtagatgacggctgccgcatccacgtcattgaccacagtggcgcccgccttggtgagtatgaggacgtgtcccgggtggagaagtacacgatctcacaagaagcctacgaccagaggcaagacacggtccgctctttcctgaagcgcagcaagctcggccggtacaacgaggaggagcgggctcagcaggaggccgaggccgcccagcgcctggccgaggagaaggcccaggccagctccatccccgtgggcagccgctgtgaggtgcgggcggcgggacaatcccctcgccggggcaccgtcatgtatgtagCTAGGGGACGATGATGTGGCAGATGGCTTGGCCTTCCACGCCAAGCGCAGCTACCAGCCCCACGGCCGCTGGGCAGAGCGGGCCGGCCAAGAGCCCCTCAAGACCATCCTGGATGCCCAGGACCTGGATTGCTACTTTACCCCCATGAAGCCCGAGAGTCTGGAGAACTCCATTCTGGATTCACTGGAGCCACAGAGCCTGGCCAGCCTGCTGAGTGAGTCAGAGAGTCCCCAGGAAGCTGGCCGCGGGCACCCCTCCTTCCTGCCCCAGCAGAAGGAATCATCTGAGGCCAGTGAGCTCATCCTCTACTCTCTGGAGGCAGAAGTGACAGTCACAGGGACAGACAGCCAGTATTGCAGGAAGGAGGTGGAGGCCGGGCCTGGAGACCAGCAGGGCGACTCCTACCTCAGGGTGTCCTCCGACAGCCCAAAGGACCAGAGCCCGCCTGAGGACTCGGGGGAGTCAGAGGCCGACCTGGAGTGCAGCTTCGCAGCCATCCACTCCCCAGCTCCGCCTCCTGACCCTGCCCCTCGGTTTGCCACGTCGCTGCCCCATTTCCCAGGATGCGCAGGTCCCACAGAAGATGAGCTGTCCCTGCCCGAGGGACCCAGCGTCCCCAGCAGCTCCCTACCCCAGACTCCGGAGCAGGAGAAGTTCCTCCGCCACCACTTTGAGACACTGACTGAGTCCCCCTGCAGAGAGCTCTTCCCCGCAGCTCTGGGAGACGTGGAGGCCTCTGAAGCTGAAGACCACTTCTTCAACCCACGCCTGAGTATCTCCACGCAGTTCCTCTCAAGCCTCCAGAAGGCATCCAGGTTCACCCATACCTTCCCTCCCCGGGCAACCCAGTGCCTTGTGAAGTCTCCAGAGGTCAAGCTCATGGACCGAGGCGGAAGCCAGCCCAGAGCAGGTACTGGCTACGCCTCCCCAGACAGGACCCACGTCCTCGCTGCAGGGAAGGCTGAAGAGACCCTGGAGGCCTGGCGCCCACCACCTCCCTGCCTTACGAGCCTGGCGTCCTGTGTCCCTGCTTCCTCCGTGCTGCCCACAGACAGGAATCTCCCAACGCCCACATCTGCACCCACCCCAGGCCTGGCTCAGGGTGTCCATGCCCCCTCCACCTGTTCCTACATGGAGGCCACTGCCAGCTCCCGTGCCAGGATATCACGCAGCATCTCCCTCGGTGACAGTGAGGGCCCTATCGTGGCCACACTGGCCCAGCCCCTCCGTAGGCCATCGTCCGTTGGGGAGCTGGCCTCCTTGGGCCAGGAGCTTCAGGCCATCACCACCGCGACAACACCCAGTTTGGACAGTGAGGGCCAAGAGCCTGCCCTGCGTTCCTGGGGCAACCACGAGGCCCGGGCCAACCTGAGACTGACCCTGTCAAGTGCCTGTGATGGGCTCCTGCAGCCCCCCGTGGATACCCAGCCTGGCGTCACCGTCCCTGCAGTGAGCTTCCCAGCCCCTAGCCCTGTGGAAGAGAGCGCCCTGAGGCTCCACGGCTCTGCCTTTCGCCCAAGTCTCCCAGCTCCTGAGTCCCCTGGCCTTCCTGCCCACCCCAGTAACCCCCAGCTTCCAGAGGCCCGGCCTGGCATCCCTGGCGGCACTGCCTCCCTCCTGGAGCCCACCTCCGGTGCACTTGGTCTGTTACAGGGCAGCCCTGCCCGCTGGAGTGAGCCCTGGGTGCCGGTTGAAGCCCTGCCCCCATCTCCCCTTGAGCTGAGCAGGGTGGGGAACATCTTGCACAGGCTGCAGACCACCTTCCAAGAAGCCCTCGACCTTTACCGTGTGTTGGTCTCCAGTGGCCAGGTGGACACCGGGCAGCAGCAGGCACGGACTGAGCTGGTCTCCACCTTCCTGTGGATCCACAGCCAGCTGGAGGCTGAATGCCTGGTGGGGACTAGTGTGGCCCCAGCCCAGGCTCTGCCCAGCCCAGGACCCCCGTCCCCACCGACGCTGTACCCCCTGGCCAGCCCAGACCTGCAGGCCCTGCTGGAACACTACTCGGAGCTGCTGGTGCAGGCCGTGCGGAGGAAGGCACGGGGGCACTGA MEVTGVSAPTVTVFISSSLNTFRSEKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLKRSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVARGR*CGRWLGLPRQAQLPAPRPLGRAGRPRAPQDHPGCPGPGLLLYPHEARESGELHSGFTGATEPGQPAE*VRESPGSWPRAPLLPAPAEGII*GQ*AHPLLSGGRSDSHRDRQPVLQEGGGGRAWRPAGRLLPQGVLRQPKGPEPA*GLGGVRGRPGVQLRSHPLPSSAS*PCPSVCHVAAPFPRMRRSHRR*AVPARGTQRPQQLPTPDSGAGEVPPPPL*DTD*VPLQRALPRSSGRRGGL*S*RPLLQPTPEYLHAVPLKPPEGIQVHPYLPSPGNPVPCEVSRGQAHGPRRKPAQSRYWLRLPRQDPRPRCREG*RDPGGLAPTTSLPYEPGVLCPCFLRAAHRQESPNAHICTHPRPGSGCPCPLHLFLHGGHCQLPCQDITQHLPR*Q*GPYRGHTGPAPP*AIVRWGAGLLGPGASGHHHRDNTQFGQ*GPRACPAFLGQPRGPGQPETDPVKCL*WAPAAPRGYPAWRHRPCSELPSP*PCGRERPEAPRLCLSPKSPSS*VPWPSCPPQ*PPASRGPAWHPWRHCLPPGAHLRCTWSVTGQPCPLE*ALGAG*SPAPISP*AEQGGEHLAQAADHLPRSPRPLPCVGLQWPGGHRAAAGTD*AGLHLPVDPQPAGG*MPGGD*CGPSPGSAQPRTPVPTDAVPPGQPRPAGPAGTLLGAAGAGRAEEGTGAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28331 CUX1::LINC01568 ENSG00000257923.12::ENSG00000258779.8 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101916225:+ chr7:101459184-101927250:+ chr7:101559505:+ LINC01568 ENSG00000258779.8 lncRNA + + chr16:73386771-73504954:+ chr16:73504241:+ chr16:73420670-73538853:+ chr16:73538140:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CUX1:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr16] 9 6 9 6 ONLY_REF_SPLICE YES_LDAS 0.1631 GT 1.7465 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 28334 GAN::BCO1 ENSG00000261609.8::ENSG00000135697.10 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 142 TRUE 244 TRUE 95 GAN ENSG00000261609.8 protein_coding + + chr16:81314944-81390809:+ chr16:81315280:+ chr16:81348549-81424414:+ chr16:81348885:+ BCO1 ENSG00000135697.10 protein_coding + + chr16:81238689-81291142:+ chr16:81267908:+ chr16:81272294-81324747:+ chr16:81301513:+ chr16:81322653,chr16:81322653 chr16:81262389,chr16:81262386 NA NA chr16:81356258,chr16:81356258 chr16:81295994,chr16:81295991 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BTB|21-57|4.6e-12 none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.02Mb];LOCAL_REARRANGEMENT:+:[23810] 8 3 8 1.5 ONLY_REF_SPLICE YES_LDAS 0.1033 GT 1.8892 AG 1.4295 ENST00000650388.1 1-167 ENST00000258168.7 620-1644 chr16|+|[0]81315114-81315280[1]<==>chr16|+|[1]81267908-81268131[2]|[0]81270159-81270416[2]|[0]81280857-81280962[0]|[1]81285540-81285634[2]|[0]81287295-81287406[0]|[1]81290348-81290577[2] atggctgagggcagtgccgtgtctgaccctcagcacgccgcgcgtctgctgcgagcgctcagctctttccgcgaggagtctcgcttctgcgacgcgcacctggtcctcgacggggaggagatcccggtgcagaagaacatcctggcggcggccagcccgtacatcagAGGGCAAGAAGCAGGGGAAGAGCCCCTGGAAGCACACAGAGGTGTTCTGCTCCATCCCATCCCGCTCCCTGCTCTCCCCAAGCTACTACCACAGCTTTGGAGTCACCGAGAACTATGTCATCTTCCTTGAGCAGCCTTTCAGGTTGGATATTCTCAAGATGGCAACCGCATACATCCGGAGAATGAGCTGGGCCTCCTGCCTGGCTTTCCACAGGGAGGAGAAGACTTATATCCACATCATCGACCAAAGGACCAGGCAGCCTGTGCAGACCAAGTTTTACACAGACGCCATGGTGGTCTTCCATCACGTCAACGCCTACGAAGAGGACGGCTGCATCGTGTTTGACGTCATTGCCTACGAGGACAACAGCCTCTACCAGCTCTTCTACCTGGCCAACCTGAACCAGGACTTCAAGGAGAACTCCAGGCTCACCTCGGTCCCCACCCTCAGGAGGTTTGCCGTGCCCCTCCACGTGGACAAGAATGCAGAAGTGGGCACAAATTTAATCAAAGTGGCATCTACAACAGCCACGGCCCTGAAGGAAGAAGATGGCCAAGTCTACTGCCAGCCGGAATTTCTTTATGAAGGCTTAGAGCTTCCACGGGTCAATTATGCTCACAATGGAAAGCAATACCGATATGTCTTTGCTACAGGAGTTCAGTGGAGTCCAATCCCAACCAAGATAATAAAATATGACATTCTCACAAAGTCATCCTTAAAATGGAGAGAGGACGACTGCTGGCCAGCGGAACCCCTGTTTGTGCCCGCGCCAGGTGCCAAGGATGAGGATGACGGAGTAATCTTATCAGCCATTGTCTCTACTGATCCCCAAAAGCTGCCTTTTCTGCTCATTCTGGATGCCAAAAGCTTTACGGAATTGGCCCGTGCCTCTGTTGATGTCGATATGCACATGGATCTCCATGGATTATTCATTACAGACATGGACTGGGACACAAAAAAGCAGGCCGCTTCTGAGGAACAGCGGGACAGGGCTTCCGACTGCCACGGGGCTCCTCTGACCTGA MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRGQEAGEEPLEAHRGVLLHPIPLPALPKLLPQLWSHRELCHLP*AAFQVGYSQDGNRIHPENELGLLPGFPQGGEDLYPHHRPKDQAACADQVLHRRHGGLPSRQRLRRGRLHRV*RHCLRGQQPLPALLPGQPEPGLQGELQAHLGPHPQEVCRAPPRGQECRSGHKFNQSGIYNSHGPEGRRWPSLLPAGISL*RLRASTGQLCSQWKAIPICLCYRSSVESNPNQDNKI*HSHKVILKMERGRLLASGTPVCARARCQG*G*RSNLISHCLY*SPKAAFSAHSGCQKLYGIGPCLC*CRYAHGSPWIIHYRHGLGHKKAGRF*GTAGQGFRLPRGSSDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28335 BRPF1::CPNE9 ENSG00000156983.17::ENSG00000144550.14 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 237 TRUE 89 BRPF1 ENSG00000156983.17 protein_coding + + chr3:9731729-9748019:+ chr3:9732138:+ chr3:9773413-9789703:+ chr3:9773822:+ CPNE9 ENSG00000144550.14 protein_coding + + chr3:9703826-9729908:+ chr3:9718450:+ chr3:9745510-9771592:+ chr3:9760134:+ chr3:9732745,chr3:9732745 chr3:9718287,chr3:9718284 NA NA chr3:9774429,chr3:9774429 chr3:9759971,chr3:9759968 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];LOCAL_REARRANGEMENT:+:[1821] 8 75 8 11.38 INCL_NON_REF_SPLICE YES_LDAS 0.2107 GT 1.7968 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28336 GAN::BCO1 ENSG00000261609.8::ENSG00000135697.10 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 141 TRUE 244 TRUE 95 GAN ENSG00000261609.8 protein_coding + + chr16:81314944-81390809:+ chr16:81315280:+ chr16:81348549-81424414:+ chr16:81348885:+ BCO1 ENSG00000135697.10 protein_coding + + chr16:81238689-81291142:+ chr16:81264640:+ chr16:81272294-81324747:+ chr16:81298245:+ chr16:81322653,chr16:81322653 chr16:81262389,chr16:81262386 NA NA chr16:81356258,chr16:81356258 chr16:81295994,chr16:81295991 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BTB|21-57|4.6e-12 RPE65-PARTIAL|~472-518|1e-125 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.02Mb];LOCAL_REARRANGEMENT:+:[23810] 7 4 7 2.5 ONLY_REF_SPLICE YES_LDAS 0.1033 GT 1.8892 AG 1.7819 ENST00000650388.1 1-167 ENST00000258168.7 472-1644 chr16|+|[0]81315114-81315280[1]<==>chr16|+|[0]81264640-81264787[0]|[1]81267908-81268131[2]|[0]81270159-81270416[2]|[0]81280857-81280962[0]|[1]81285540-81285634[2]|[0]81287295-81287406[0]|[1]81290348-81290577[2] atggctgagggcagtgccgtgtctgaccctcagcacgccgcgcgtctgctgcgagcgctcagctctttccgcgaggagtctcgcttctgcgacgcgcacctggtcctcgacggggaggagatcccggtgcagaagaacatcctggcggcggccagcccgtacatcagGTTGATTATCGTAAATACGTGGCGGTAAATCTGGCAACGTCACATCCCCATTATGATGAGGCTGGAAATGTTCTAAACATGGGCACATCCATTGTGGAAAAGGGGAAGACAAAGTATGTGATTTTTAAGATCCCTGCCACAGTACCAGAGGGCAAGAAGCAGGGGAAGAGCCCCTGGAAGCACACAGAGGTGTTCTGCTCCATCCCATCCCGCTCCCTGCTCTCCCCAAGCTACTACCACAGCTTTGGAGTCACCGAGAACTATGTCATCTTCCTTGAGCAGCCTTTCAGGTTGGATATTCTCAAGATGGCAACCGCATACATCCGGAGAATGAGCTGGGCCTCCTGCCTGGCTTTCCACAGGGAGGAGAAGACTTATATCCACATCATCGACCAAAGGACCAGGCAGCCTGTGCAGACCAAGTTTTACACAGACGCCATGGTGGTCTTCCATCACGTCAACGCCTACGAAGAGGACGGCTGCATCGTGTTTGACGTCATTGCCTACGAGGACAACAGCCTCTACCAGCTCTTCTACCTGGCCAACCTGAACCAGGACTTCAAGGAGAACTCCAGGCTCACCTCGGTCCCCACCCTCAGGAGGTTTGCCGTGCCCCTCCACGTGGACAAGAATGCAGAAGTGGGCACAAATTTAATCAAAGTGGCATCTACAACAGCCACGGCCCTGAAGGAAGAAGATGGCCAAGTCTACTGCCAGCCGGAATTTCTTTATGAAGGCTTAGAGCTTCCACGGGTCAATTATGCTCACAATGGAAAGCAATACCGATATGTCTTTGCTACAGGAGTTCAGTGGAGTCCAATCCCAACCAAGATAATAAAATATGACATTCTCACAAAGTCATCCTTAAAATGGAGAGAGGACGACTGCTGGCCAGCGGAACCCCTGTTTGTGCCCGCGCCAGGTGCCAAGGATGAGGATGACGGAGTAATCTTATCAGCCATTGTCTCTACTGATCCCCAAAAGCTGCCTTTTCTGCTCATTCTGGATGCCAAAAGCTTTACGGAATTGGCCCGTGCCTCTGTTGATGTCGATATGCACATGGATCTCCATGGATTATTCATTACAGACATGGACTGGGACACAAAAAAGCAGGCCGCTTCTGAGGAACAGCGGGACAGGGCTTCCGACTGCCACGGGGCTCCTCTGACCTGA MAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRLIIVNTWR*IWQRHIPIMMRLEMF*TWAHPLWKRGRQSM*FLRSLPQYQRARSRGRAPGSTQRCSAPSHPAPCSPQATTTALESPRTMSSSLSSLSGWIFSRWQPHTSGE*AGPPAWLSTGRRRLISTSSTKGPGSLCRPSFTQTPWWSSITSTPTKRTAASCLTSLPTRTTASTSSSTWPT*TRTSRRTPGSPRSPPSGGLPCPSTWTRMQKWAQI*SKWHLQQPRP*RKKMAKSTASRNFFMKA*SFHGSIMLTMESNTDMSLLQEFSGVQSQPR**NMTFSQSHP*NGERTTAGQRNPCLCPRQVPRMRMTE*SYQPLSLLIPKSCLFCSFWMPKALRNWPVPLLMSICTWISMDYSLQTWTGTQKSRPLLRNSGTGLPTATGLL*P FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28337 IGHMBP2::SPTBN2 ENSG00000132740.10::ENSG00000173898.15 HDQP1 SRR8615278 SRR8639187 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA IGHMBP2 ENSG00000132740.10 protein_coding + + chr11:68903863-68940602:+ chr11:68917883:+ chr11:68671331-68708070:+ chr11:68685351:+ SPTBN2 ENSG00000173898.15 protein_coding - - chr11:66682497-66744670:- chr11:66721262:- chr11:66449968-66512141:- chr11:66488733:- chr11:68923065 chr11:66728574 NA NA chr11:68690533 chr11:66496045 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:2.17Mb] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1196 GT 1.7968 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28342 MGRN1::C16orf96 ENSG00000102858.13::ENSG00000205832.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 146 FALSE NA FALSE NA MGRN1 ENSG00000102858.13 protein_coding + + chr16:4616493-4690974:+ chr16:4625048:+ chr16:4666494-4740975:+ chr16:4675049:+ C16orf96 ENSG00000205832.8 protein_coding + + chr16:4556340-4600758:+ chr16:4571561:+ chr16:4606341-4650759:+ chr16:4621562:+ chr16:4646646,chr16:4646646,chr16:4646646,chr16:4646647 chr16:4568078,chr16:4567879,chr16:4568075,chr16:4568076 NA NA chr16:4696647,chr16:4696647,chr16:4696647,chr16:4696648 chr16:4618079,chr16:4617880,chr16:4618076,chr16:4618077 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Baculo_PEP_C|684-744|0.036^Baculo_PEP_C|726-792|0.055^Cep57_CLD|727-753|0.59^DUF4795|767-940|8.6e-66^Cep57_CLD|783-814|0.0022^Baculo_PEP_C|830-863|0.45^MobC|858-887|0.00021 ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.02Mb];LOCAL_REARRANGEMENT:+:[15779] 64 38 64 38 ONLY_REF_SPLICE YES_LDAS 1.2051 GT 1.8295 AG 1.9656 ENST00000415496.5 1-88 ENST00000444310.5 421-3426 chr16|+|[0]4624961-4625048[0]<==>chr16|+|[0]4571561-4571665[2]|[0]4574709-4574789[2]|[0]4574972-4575058[2]|[0]4575174-4576635[0]|[1]4578940-4579025[2]|[0]4580015-4580125[2]|[0]4587039-4587113[2]|[0]4588167-4588331[2]|[0]4591666-4591784[1]|[2]4592305-4592367[1]|[2]4593224-4593316[1]|[2]4594351-4594510[2]|[0]4594704-4594803[0]|[1]4599284-4599364[0]|[1]4600100-4600317[2] atgggctccattctcagccgccgcatcgcgggggtggaggacatcgacatccaggcgaactcggcctatcgctaccctccgaagtccgTCAATGCAGACCCTGCAGGACTTGCTCACTGATCTTCATGCACTCCAGGTCACCATCACAGCCCTCAGAAAAGAAGTGGACATGCTGAAGAACATGCTTGACAAGGTACACCCAGAAAGAATGGACATCTTTGCTGAAGACTTCAAAATACAGAACTGGAAGATGGTTGCACTGCAGCGGGAAGTGGCTTCTCTCCAGAATAAGTTTAAAACCATCCCCAAAACCGAGGACATGGTGCTCTGGAGTGGCCTTCATGATGCCATGTTCACCTCAGAAATTGGTTCATCACCACTGGACCTGTGGCAGTCTGTAGAGCAGCTCCCAGAGGCTGCCCTGGCCCAGACCACCAAGTACCTTGAAGCTACTCGTGCCATCCAGGTCTCCGAGCCCGTCCAAAACCCCCAGCTACTGCAGACTGTCTGGCATTATGAGGTCCCAGAGCTCCTCCCGGAGGGCTCATCTGCCCAAGCAGTTTCACTCAGCAGAGCCCAGGAGCCAGCGCAGCCTCCGGCCCTCACGCCTGAGTCTGCACCTGGGTGCACAACTGAATTTGCACCTGGGCCTGCACCTGGGACTGAACCTGTGCCAGGACTGGAGCTGGGGCTGGAGCTGGAGCCTGTGCCTGCCCTGGGGCCTGTCCCAGGGCCCAGTGTGACACCTGGGTCCTTGCCAGCACCTTGGCCTGTGCTTGGACCTGTGCCTGCCCCAGGTGCCCAGCCTCCACCACTGGGAGACTGGCCTGCACTCCCAAGACGCTGGCCTCTTCCCCAAGGCTGGCCCAGGGTGGGCTCTTGGCCTCTGTGGGACTTAGGTGTCCTGCGGCCAACTCAGCCCCAACCCTCCAGGGCCCCACCACCAGCCACTGAGTTTGGCTCATTGTGGCCTCGACCACTCCAGCCATATCAGTCTCGCCAGGGAGAAGCCCTCCAGCTCGCAGCTGTCCAAGTAAAGGGGGAGGAAAATGATGTCCCCAGCCTAAGGGGCCTTCGGGAGAGGGCCCGCAAGGATGGGGCCCCCAAGGATAGAACTCGCAAGGATGGGGTCCCCAAAGATAGAGGTGGCAAGGATGTGGACCCCAAGGATAGAGCTCACAAGGATGATGTCCCCAAAGATAGAGGTGGCAAGGATGTGGACCCCAAGGATAGAGCTCACAAGGATGATGTCCCCAAAGATAGAGGTGGCAAAGATGGGGACCCCAAGGATAGAGTTGGCAAGGATGGGGCCCCCAAGGAAGCACAGCCTAAGGCTCCCCAGTCTGCCCTTCACCGGCTGAAAACCACCGCTGCCATCGCCGCCGCTGCCGCCGCAGCCTACGCCGCTGCCACATCCTCCGCTGCCCAGGCAGCCAAAGTTGCTGCCAAGTTTGTCAAGGATGCCCCAGCCACCAAAATGGCCGCCATTGCAACAGACACGGCTGCAGCTGGGCCCCTAGGGGTCTTTGCAGATGTCCTGGGTGCAGGGCCTTCCCGGGGAGCCACAGAATCCCAGATCTTGGGCGATGATTCCGAAATCTACGAAATCCTCTCTCCCTCCTACTCTGCTGCCAGCATCGGTCCCGATCCAGCCCTGTCCCAGGCCATGGTGGCTACCAAGCAGGCCATGAGCCCTGAAGACAAGAAGAGGGCTGTCAAGTATTCCATGAGCCACATAGCCCAGATACCTGTCAAACACGACTCTCTGAAGGAAGAATTTGCCCAGCTGTCCTGTAACCTGAACCAGCGCTTGAGTTATCTAGCCAATATGGGAGGTCCTTCCAGCCTCGGGACAACAGTGGACATATTGCAGAAAAAGATTGGCAGCCTCCAGAAATCTAGGCTCAAGGAGGAAGAACTTGAGAGAATTTGGGGCAACCAAATAGAGATGATGAAGGATCGCTACATCACTTTGGACAAGGCGGTGGAGAACCTGCAGATTCGCATGGATGAGTTCAAGACTCTCCAGGCTCAAATCAAAAGACTGGAAATGAACAAGGTGAATAAGAGCACGATGGAGGAGGAGCTGAGAGAGAAAGCTGACAGGAGTGCCCTGGCAGGCAAGGCAAGCCGCGTTGACCTGGAGACTGTGGCCTTGGAGCTGAACGAGATGATTCAGGGCATACTCTTCAAGGTCACGATCCATGAGGACAGCTGGAAGAAGGCTATGGAGGAGCTCAGCAAGGACGTGAACACCAAGTTAGTCCACAGTGATCTGGATCCCTTGAAGAAAGAAATGGAAGAGGTCTGGAAAATCGTCCGGAAGCTGCTGATTGAGGGCTTAAGACTGGATCCTGACAGTGCTGCTGGCTTTAGGAGGAAGCTGTTCAAGCGCGTGAAGTGCATCTCCTGTGACCGGCCTGTGGAGATGATGACTGGCCCACAGCTGATCACCATCCGCAAAGCCCACCTGCTGTCCCGGCTGCGGCCAGCCAGCGCCAACAGCTGCGAGTACTTGCAGCGGCAACAGATGAGGGAACAGCAGTGGCTGCAGCTCCAGGACCTCGGTATCCAGGAGGATTGTCAGCAGGACTGGGGTGATGGCCCCCAAAACGCCACCAGCCTCAAGTGCAAGTCCTGCAACCTGTTGACGCTCTATCCCTACGGGGATCCCCACGTGATCGACTATGACAGCGCCGAGGTGGACATCCTGGGCGTGGATGGGATCCTGTACAAAGGCCGCGTGAACAGCCAGCGTGGGGCTCAGCCCTTGGCCGTCGCAAAGGAGCTGGCAGCTGTGAAGGCTCCATCTCCCCCGTCACAAAGCCTGTATGACCGTGTGCACTCCAGTGCCCTATTTGGCGCCATCTGCCCCCCCCTGTGCCCCCGCTCCAGTGCCTGCTCAGCTGCCTCGGGCCCTCACCTGACGATGCCAGCTCGACCACCTTCCCTGCCACCTCTGCTGCTGCTGCCACCGCTGATTCCATCCCTAAGGGACCCCCAGCAGGCCCCAGGGTCCACCAGGCTCTCAAGAGCTCCACACATTGAGTCCCGAGTCGGCAGGAAGCCCCCCGAGGAGCCCGCCAACCCGTGA MGSILSRRIAGVEDIDIQANSAYRYPPKSVNADPAGLAH*SSCTPGHHHSPQKRSGHAEEHA*QGTPRKNGHLC*RLQNTELEDGCTAAGSGFSPE*V*NHPQNRGHGALEWPS*CHVHLRNWFITTGPVAVCRAAPRGCPGPDHQVP*SYSCHPGLRARPKPPATADCLAL*GPRAPPGGLICPSSFTQQSPGASAASGPHA*VCTWVHN*ICTWACTWD*TCARTGAGAGAGACACPGACPRAQCDTWVLASTLACAWTCACPRCPASTTGRLACTPKTLASSPRLAQGGLLASVGLRCPAANSAPTLQGPTTSH*VWLIVASTTPAISVSPGRSPPARSCPSKGGGK*CPQPKGPSGEGPQGWGPQG*NSQGWGPQR*RWQGCGPQG*SSQG*CPQR*RWQGCGPQG*SSQG*CPQR*RWQRWGPQG*SWQGWGPQGSTA*GSPVCPSPAENHRCHRRRCRRSLRRCHILRCPGSQSCCQVCQGCPSHQNGRHCNRHGCSWAPRGLCRCPGCRAFPGSHRIPDLGR*FRNLRNPLSLLLCCQHRSRSSPVPGHGGYQAGHEP*RQEEGCQVFHEPHSPDTCQTRLSEGRICPAVL*PEPALELSSQYGRSFQPRDNSGHIAEKDWQPPEI*AQGGRT*ENLGQPNRDDEGSLHHFGQGGGEPADSHG*VQDSPGSNQKTGNEQGE*EHDGGGAERES*QECPGRQGKPR*PGDCGLGAERDDSGHTLQGHDP*GQLEEGYGGAQQGREHQVSPQ*SGSLEERNGRGLENRPEAAD*GLKTGS*QCCWL*EEAVQAREVHLL*PACGDDDWPTADHHPQSPPAVPAAASQRQQLRVLAAATDEGTAVAAAPGPRYPGGLSAGLG*WPPKRHQPQVQVLQPVDALSLRGSPRDRL*QRRGGHPGRGWDPVQRPREQPAWGSALGRRKGAGSCEGSISPVTKPV*PCALQCPIWRHLPPPVPPLQCLLSCLGPSPDDASSTTFPATSAAAATADSIPKGPPAGPRVHQALKSSTH*VPSRQEAPRGARQPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA TRUE Liver hepatocellular carcinoma,Lung squamous cell carcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma LIVER,LUNG,LIVER,SKIN no_match 4718313,4675049,4675049,4675049 FALSE,TRUE,TRUE,TRUE 4621562,4621562,4621562,4621562 TRUE,TRUE,TRUE,TRUE YES,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28344 NT5DC1::FRK ENSG00000178425.14::ENSG00000111816.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 147 FALSE NA FALSE NA NT5DC1 ENSG00000178425.14 protein_coding + + chr6:116100851-116249497:+ chr6:116117945:+ chr6:116422014-116570660:+ chr6:116439108:+ FRK ENSG00000111816.8 protein_coding - - chr6:115931149-116060891:- chr6:115968739:- chr6:116252312-116382054:- chr6:116289902:- chr6:116128212,chr6:116128210 chr6:115991195,chr6:115991197 NA NA chr6:116449375,chr6:116449373 chr6:116312358,chr6:116312360 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame 5_nucleotid|4-339|5.5e-64^HAD|13-45|0.012^Hydrolase|117-249|2.6e-05^HAD|132-248|0.0053^Ribosomal_S16|161-206|0.00019^Ribosomal_S16|345-367|0.19 PK_Tyr_Ser-Thr-PARTIAL|~467-486|4.1e-102^Pkinase-PARTIAL|~467-483|4.9e-55 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_INVERSION:+:-:[40091] 44 43 44 43 ONLY_REF_SPLICE YES_LDAS 1.0278 GT 1.8892 AG 1.8256 ENST00000319550.9 1-529 ENST00000606080.2 467-1518 chr6|+|[0]116100931-116101023[2]|[0]116106244-116106335[1]|[2]116108364-116108435[1]|[2]116110850-116110956[0]|[1]116115691-116115770[2]|[0]116117861-116117945[0]<==>chr6|-|[2]115942414-115942625[1]|[0]115943020-115943185[0]|[2]115944244-115944425[1]|[0]115956452-115956610[1]|[0]115967551-115967719[0]|[2]115968576-115968739[1] atggctcagcacttctccctggccgcctgcgacgtggtcggattcgacctggaccacactctgtgtcgctacaacctgcccgagagcgccccgctcatttataatagctttgcccagttcctagttaaggagaaagggtacgataaggaattgctcaatgtgaccccagaggattgggatttctgttgcaaaggtttggcattggatctagaagatgggaacttccttaaacttgcaaataatggcactgttctcagggcaagccatggcaccaagatgatgactccagaggtgctggcagaggcatatggcaagaaagagtggaagcacttcttgtcggacactggaatggcttgccgctcaggaaagtattacttttacgacaactactttgacctgccaggagctcttctgtgtgccagggtggtggactatttaacaaaactgaacaatggtcaaaaaacatttgatttttggaaggatatagttgctgctatacaacacaattataaaatgtcagcttttaaggTTTTAGATGGAGCAGTTGTAAAACACTACAGAATTAAAAGACTGGATGAAGGGGGATTTTTTCTCACGCGAAGAAGAATCTTTTCAACACTGAACGAATTTGTGAGCCACTACACCAAGACAAGTGACGGCCTGTGTGTCAAGCTGGGGAAACCATGCTTAAAGATCCAGGTCCCAGCTCCATTTGATTTGTCGTATAAAACCGTGGACCAATGGGAGATAGACCGCAACTCCATACAGCTTCTGAAGCGATTGGGATCTGGTCAGTTTGGCGAAGTATGGGAAGGTCTGTGGAACAATACCACTCCAGTAGCAGTGAAAACATTAAAACCAGGTTCAATGGATCCAAATGACTTCCTGAGGGAGGCACAGATAATGAAGAACCTAAGACATCCAAAGCTTATCCAGCTTTATGCTGTTTGCACTTTAGAAGATCCAATTTATATTATTACAGAGTTGATGAGACATGGAAGTCTGCAAGAATATCTCCAAAATGACACTGGATCAAAAATCCATCTGACTCAACAGGTAGACATGGCGGCACAGGTTGCCTCTGGAATGGCCTATCTGGAGTCTCGGAACTACATTCACAGAGATCTGGCTGCCAGAAATGTCCTCGTTGGTGAACATAATATCTACAAAGTAGCAGATTTTGGACTTGCCAGAGTTTTTAAGGTAGATAATGAAGACATCTATGAATCTAGACACGAAATAAAGCTGCCGGTGAAGTGGACTGCGCCCGAAGCCATTCGTAGTAATAAATTCAGCATTAAGTCCGATGTATGGTCATTTGGAATCCTTCTTTATGAAATCATTACTTATGGCAAAATGCCTTACAGTGGTATGACAGGTGCCCAGGTAATCCAGATGTTGGCTCAAAACTATAGACTTCCGCAACCATCCAACTGTCCACAGCAATTTTACAACATCATGTTGGAGTGCTGGAATGCAGAGCCTAAGGAACGACCTACATTTGAGACACTGCGTTGGAAACTTGAAGACTATTTTGAAACAGACTCTTCATATTCAGATGCAAATAACTTCATAAGATGA MAQHFSLAACDVVGFDLDHTLCRYNLPESAPLIYNSFAQFLVKEKGYDKELLNVTPEDWDFCCKGLALDLEDGNFLKLANNGTVLRASHGTKMMTPEVLAEAYGKKEWKHFLSDTGMACRSGKYYFYDNYFDLPGALLCARVVDYLTKLNNGQKTFDFWKDIVAAIQHNYKMSAFKVLDGAVVKHYRIKRLDEGGFFLTRRRIFSTLNEFVSHYTKTSDGLCVKLGKPCLKIQVPAPFDLSYKTVDQWEIDRNSIQLLKRLGSGQFGEVWEGLWNNTTPVAVKTLKPGSMDPNDFLREAQIMKNLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDTGSKIHLTQQVDMAAQVASGMAYLESRNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESRHEIKLPVKWTAPEAIRSNKFSIKSDVWSFGILLYEIITYGKMPYSGMTGAQVIQMLAQNYRLPQPSNCPQQFYNIMLECWNAEPKERPTFETLRWKLEDYFETDSSYSDANNFIR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Tyrosine-protein kinase FRK TK Src P42685 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28345 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 149 TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75244619:- chr17:73232694-73258444:- chr17:73240700:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225103:+ chr17:73201754-73231853:+ chr17:73221198:+ chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 chr17:75244661,chr17:75244660 chr17:75223196,chr17:75223196 chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 chr17:73240742,chr17:73240741 chr17:73219291,chr17:73219291 sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VHS|5-103|8.1e-44 Nucleopor_Nup85-PARTIAL|~262-494|3.5e-180^TPR_4|528-539|0.26 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];LOCAL_INVERSION:-:+:[841] 39 26 39 24 ONLY_REF_SPLICE YES_LDAS 0.7443 GT 1.9656 AG 1.9086 ENST00000582376.1 1-300 ENST00000579324.5 262-1635 chr17|-|[2]75244619-75244717[0]|[2]75246509-75246584[2]|[1]75246712-75246796[1]|[0]75261548-75261587[0]<==>chr17|+|[0]75225103-75225237[2]|[0]75225342-75225464[2]|[0]75225698-75225829[2]|[0]75226051-75226157[1]|[2]75231340-75231423[1]|[2]75231573-75231638[1]|[2]75231828-75231979[0]|[1]75232851-75232968[1]|[2]75233058-75233158[0]|[1]75234637-75234788[2]|[0]75235100-75235201[2]|[0]75235578-75235679[2] atggcggaggcggaaggggaaagcctggagtcctggctcaataaagccaccaatccttccaaccgccaggaggactgggaatacataattggcttctgtgatcagatcaacaaggagctggaagggccacagatcgccgtccgactgctggcccacaagatccagtccccacaggaatgggaggcgctccaggccctgacggtgctggaggcatgcatgaagaactgtgggaggagatttcataacgaagtggggaagttccgctttttgaatgagttaatcaaagtcgtctctccaaagGTGACCATCTTGGTGCTGCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGGAAGCCGATGCCAGCCCCGCCTCTGCAGGCATATGCCGAATCATGGGGGACCTGATGAGGACAATGCCCATTCTTAGTCCCGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGGCAGCACTGGCACGAGGAATGTGAGCGGTACCTCCAGGACAGCACATTCGCCACCAGCCCTCACCTGGAGTCTCTCTTGAAGATTATGCTGGGAGACGAAGCTGCCTTGTTAGAGCAGAAGGAACTTCTGAGTAATTGGTATCATTTCCTAGTGACTCGGCTCTTGTACTCCAATCCCACAGTAAAACCCATTGATCTGCACTACTATGCCCAGTCCAGCCTGGACCTGTTTCTGGGAGGTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGCAGCCTTTGAGTTTGACATCCATCAAGTAATCAAAGAGTGCAGCATCGCCCTGAGCAACTGGTGGTTTGTGGCCCACCTGACAGACCTGCTGGACCACTGCAAGCTCCTCCAGTCACACAACCTCTATTTCGGTTCCAACATGAGAGAGTTCCTCCTGCTGGAGTACGCCTCGGGACTGTTTGCTCATCCCAGCCTGTGGCAGCTGGGGGTCGATTACTTTGATTACTGCCCCGAGCTGGGCCGAGTCTCCCTGGAGCTGCACATTGAGCGGATACCTCTGAACACCGAGCAGAAAGCCCTGAAGGTGCTGCGGATCTGTGAGCAGCGGCAGATGACTGAACAAGTTCGCAGCATTTGTAAGATCTTAGCCATGAAAGCCGTCCGCAACAATCGCCTGGGTTCTGCCCTCTCTTGGAGCATCCGTGCTAAGGATGCCGCCTTTGCCACGCTCGTGTCAGACAGGTTCCTCAGGGATTACTGTGAGCGAGGCTGCTTTTCTGATTTGGATCTCATTGACAACCTGGGGCCAGCCATGATGCTCAGTGACCGACTGACATTCCTGGGAAAGTATCGCGAGTTCCACCGTATGTACGGGGAGAAGCGTTTTGCCGACGCAGCTTCTCTCCTTCTGTCCTTGATGACGTCTCGGATTGCCCCTCGGTCTTTCTGGATGACTCTGCTGACAGACGCCTTGCCCCTTTTGGAACAGAAACAGGTGATTTTCTCAGCAGAACAGACTTATGAGTTGATGCGGTGTCTGGAGGACTTGACGTCAAGAAGACCTGTGCATGGAGAATCTGATACCGAGCAGCTCCAGGATGATGACATAGAGACCACCAAGGTGGAAATGCTGAGACTTTCTCTGGCACGAAATCTTGCTCGGGCAATTATAAGAGAAGGCTCACTGGAAGGTTCCTGA MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKVTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTMPILSPGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVTRLLYSNPTVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHRMYGEKRFADAASLLLSLMTSRIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETTKVEMLRLSLARNLARAIIREGSLEGS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28346 UBA2::GPI ENSG00000126261.13::ENSG00000105220.17 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 151 FALSE NA FALSE NA UBA2 ENSG00000126261.13 protein_coding + + chr19:34428352-34471251:+ chr19:34445121:+ chr19:34919257-34962156:+ chr19:34936026:+ GPI ENSG00000105220.17 protein_coding + + chr19:34359480-34402413:+ chr19:34393248:+ chr19:34850385-34893318:+ chr19:34884153:+ chr19:34450014,chr19:34450011 chr19:34383192,chr19:34383181 NA NA chr19:34940919,chr19:34940916 chr19:34874097,chr19:34874086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ThiF|13-441|3.6e-64^NAD_binding_7|15-135|7.1e-06^UBA_E1_SCCH|179-268|5.2e-06^UBA2_C|208-220|2.6^UBA_E1_SCCH|292-377|6.9e-07^UAE_UbL|303-315|5^UAE_UbL|452-538|1e-29^UBA2_C|549-631|1.8e-27^UBA_E1_SCCH|581-616|2.7 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_REARRANGEMENT:+:[26196] 37 47 37 47 ONLY_REF_SPLICE YES_LDAS 0.9924 GT 1.7819 AG 1.6049 ENST00000246548.9 1-771 ENST00000356487.11 805-1677 chr19|+|[0]34428433-34428570[2]|[0]34430576-34430659[2]|[0]34431861-34431931[1]|[2]34433348-34433412[0]|[1]34434868-34434968[2]|[0]34438645-34438766[1]|[2]34443844-34443911[0]|[1]34445000-34445121[2]<==>chr19|+|[0]34393248-34393308[0]|[1]34393728-34393771[2]|[0]34393914-34394066[2]|[0]34396301-34396430[0]|[1]34396581-34396657[2]|[0]34399207-34399335[2]|[0]34399556-34399631[0]|[1]34399719-34399785[1]|[2]34399901-34400036[2] atggcactgtcgcgggggctgccccgggagctggctgaggcggtggccgggggccgggtgctggtggtgggggcgggcggcatcggctgcgagctcctcaagaatctcgtgctcaccggtttctcccacatcgacctgattgatctggatactattgatgtaagcaacctcaacagacagtttttgtttcaaaagaaacatgttggaagatcaaaggcacaggttgccaaggaaagtgtactgcagttttacccgaaagctaatatcgttgcctaccatgacagcatcatgaaccctgactataatgtggaatttttccgacagtttatactggttatgaatgctttagataacagagctgcccgaaaccatgttaatagaatgtgcctggcagctgatgttcctcttattgaaagtggaacagctgggtatcttggacaagtaactactatcaaaaagggtgtgaccgagtgttatgagtgtcatcctaagccgacccagagaacctttcctggctgtacaattcgtaacacaccttcagaacctatacattgcatcgtttgggcaaagtacttgttcaaccagttgtttggggaagaagatgctgatcaagaagtatctcctgacagagctgaccctgaagctgcctgggaaccaacggaagccgaagccagagctagagcatctaatgaagatggtgacattaaacgtatttctactaaggaatgggctaaatcaactggatatgatccagttaaactttttaccaagTGGGTGGGAGGACGCTACTCGCTGTGGTCGGCCATCGGACTCTCCATTGCCCTGCACGTGGGTTTTGACAACTTCGAGCAGCTGCTCTCGGGGGCTCACTGGATGGACCAGCACTTCCGCACGACGCCCCTGGAGAAGAACGCCCCCGTCTTGCTGGCCCTGCTGGGTATCTGGTACATCAACTGCTTTGGGTGTGAGACACACGCCATGCTGCCCTATGACCAGTACCTGCACCGCTTTGCTGCGTACTTCCAGCAGGGCGACATGGAGTCCAATGGGAAATACATCACCAAATCTGGAACCCGTGTGGACCACCAGACAGGCCCCATTGTGTGGGGGGAGCCAGGGACCAATGGCCAGCATGCTTTTTACCAGCTCATCCACCAAGGCACCAAGATGATACCCTGTGACTTCCTCATCCCGGTCCAGACCCAGCACCCCATACGGAAGGGTCTGCATCACAAGATCCTCCTGGCCAACTTCTTGGCCCAGACAGAGGCCCTGATGAGGGGAAAATCGACGGAGGAGGCCCGAAAGGAGCTCCAGGCTGCGGGCAAGAGTCCAGAGGACCTTGAGAGGCTGCTGCCACATAAGGTCTTTGAAGGAAATCGCCCAACCAACTCTATTGTGTTCACCAAGCTCACACCATTCATGCTTGGAGCCTTGGTCGCCATGTATGAGCACAAGATCTTCGTTCAGGGCATCATCTGGGACATCAACAGCTTTGACCAGTGGGGAGTGGAGCTGGGAAAGCAGCTGGCTAAGAAAATAGAGCCTGAGCTTGATGGCAGTGCTCAAGTGACCTCTCACGACGCTTCTACCAATGGGCTCATCAACTTCATCAAGCAGCAGCGCGAGGCCAGAGTCCAATAA MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARVQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 34919475 FALSE 34869839 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28349 CEP97::PDCL3P4 ENSG00000182504.12::ENSG00000244119.2 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CEP97 ENSG00000182504.12 protein_coding + + chr3:101724534-101770562:+ chr3:101727541:+ chr3:101443378-101489406:+ chr3:101446385:+ PDCL3P4 ENSG00000244119.2 transcribed_processed_pseudogene + + chr3:101686827-101713301:+ chr3:101709009:+ chr3:101405671-101432145:+ chr3:101427853:+ chr3:101727915,chr3:101727914 chr3:101701934,chr3:101701930 NA NA chr3:101446759,chr3:101446758 chr3:101420778,chr3:101420774 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr3:0.01Mb];LOCAL_REARRANGEMENT:+:[10734] 19 25 19 24.12 INCL_NON_REF_SPLICE YES_LDAS 0.5095 GT 1.7465 AG 1.2867 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28350 PLAUR::LYPD5 ENSG00000011422.12::ENSG00000159871.15 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 144 FALSE NA FALSE NA PLAUR ENSG00000011422.12 protein_coding - - chr19:43646095-43670547:- chr19:43652225:- chr19:44150247-44174699:- chr19:44156377:- LYPD5 ENSG00000159871.15 protein_coding - - chr19:43785874-43827206:- chr19:43799834:- chr19:44290026-44331358:- chr19:44303986:- chr19:43650635 chr19:43822296 NA NA chr19:44154787 chr19:44326448 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UPAR_LY6|25-99|1.6e-19^UPAR_LY6|117-199|3.1e-05^UPAR_LY6|216-252|2.6e-08 UPAR_LY6-PARTIAL|~65-109|0.014^Activin_recp-PARTIAL|~65-110|3.2e-06^QVR-PARTIAL|~65-109|0.003^UPAR_LY6|97-115|0.015^QVR|134-214|0.00021^UPAR_LY6|135-214|6.6e-18^Activin_recp|135-216|0.0001^DUF5478|146-190|4.6e-05 ["PLAUR:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.13Mb] 16 6 16 6 ONLY_REF_SPLICE YES_LDAS 0.2599 GT 1.6729 AG 1.7968 ENST00000339082.7 1-754 ENST00000377950.8 65-756 chr19|-|[0]43652225-43652371[1]|[0]43655439-43655573[1]|[0]43656479-43656640[1]|[0]43665316-43665459[1]|[0]43667581-43667691[1]|[0]43670066-43670120[0]<==>chr19|-|[2]43797591-43797829[1]|[0]43798455-43798601[1]|[0]43798812-43798988[1]|[0]43799706-43799834[1] atgggtcacccgccgctgctgccgctgctgctgctgctccacacctgcgtcccagcctcttggggcctgcggtgcatgcagtgtaagaccaacggggattgccgtgtggaagagtgcgccctgggacaggacctctgcaggaccacgatcgtgcgcttgtgggaagaaggagaagagctggagctggtggagaaaagctgtacccactcagagaagaccaacaggaccctgagctatcggactggcttgaagatcaccagccttaccgaggttgtgtgtgggttagacttgtgcaaccagggcaactctggccgggctgtcacctattcccgaagccgttacctcgaatgcatttcctgtggctcatcagacatgagctgtgagaggggccggcaccagagcctgcagtgccgcagccctgaagaacagtgcctggatgtggtgacccactggatccaggaaggtgaagaagggcgtccaaaggatgaccgccacctccgtggctgtggctaccttcccggctgcccgggctccaatggtttccacaacaacgacaccttccacttcctgaaatgctgcaacaccaccaaatgcaacgagggcccaatcctggagcttgaaaatctgccgcagaatggccgccagtgttacagctgcaaggggaacagcacccatggatgctcctctgaagagactttcctcattgactgccgaggccccatgaatcaatgtctggtagccaccggcactcacgGGTCCCAAGCCCTGCAGTGCTACAGCTTTGAGCACACCTACTTTGGCCCCTTTGACCTCAGGGCCATGAAGCTGCCCAGCATCTCCTGTCCTCATGAGTGCTTTGAGGCTATCCTGTCTCTGGACACCGGGTATCGCGCGCCGGTGACCCTGGTGCGGAAGGGCTGCTGGACCGGGCCTCCTGCGGGCCAGACGCAATCGAACGCGGACGCGCTGCCGCCAGACTACTCGGTGGTGCGCGGCTGCACAACTGACAAATGCAACGCCCACCTCATGACTCATGACGCCCTCCCCAACCTGAGCCAAGCACCCGACCCGCCGACGCTCAGCGGCGCCGAGTGCTACGCCTGTATCGGGGTCCACCAGGATGACTGCGCTATCGGCAGGTCCCGACGAGTCCAGTGTCACCAGGACCAGACCGCCTGCTTCCAGGGCAATGGCAGAATGACAGTTGGCAATTTCTCAGTCCCTGTGTACATCAGAACCTGCCACCGGCCCTCCTGCACCACCGAGGGCACCACCAGCCCCTGGACAGCCATCGACCTCCAGGGCTCCTGCTGTGAGGGGTACCTCTGCAACAGGAAATCCATGACCCAGCCCTTCACCAGTGCTTCAGCCACCACCCCTCCCCGAGCACTACAGGTCCTGGCCCTGCTCCTCCCAGTCCTCCTGCTGGTGGGGCTCTCAGCATAG MGHPPLLPLLLLLHTCVPASWGLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHGSQALQCYSFEHTYFGPFDLRAMKLPSISCPHECFEAILSLDTGYRAPVTLVRKGCWTGPPAGQTQSNADALPPDYSVVRGCTTDKCNAHLMTHDALPNLSQAPDPPTLSGAECYACIGVHQDDCAIGRSRRVQCHQDQTACFQGNGRMTVGNFSVPVYIRTCHRPSCTTEGTTSPWTAIDLQGSCCEGYLCNRKSMTQPFTSASATTPPRALQVLALLLPVLLLVGLSA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28353 GGA3::NUP85 ENSG00000125447.18::ENSG00000125450.11 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 150 TRUE 257 TRUE 99 GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75246509:- chr17:73232694-73258444:- chr17:73242590:- NUP85 ENSG00000125450.11 protein_coding + + chr17:75205659-75235758:+ chr17:75225103:+ chr17:73201754-73231853:+ chr17:73221198:+ chr17:75244661,chr17:75244660,chr17:75244607,chr17:75244601,chr17:75244598,chr17:75244338,chr17:75244364 chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75223196,chr17:75224102,chr17:75224167 NA NA chr17:73240742,chr17:73240741,chr17:73240688,chr17:73240682,chr17:73240679,chr17:73240419,chr17:73240445 chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73219291,chr17:73220197,chr17:73220262 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VHS|5-103|8.1e-44 Nucleopor_Nup85-PARTIAL|~262-494|3.5e-180^TPR_4|528-539|0.26 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];LOCAL_INVERSION:-:+:[841] 12 11 12 2 ONLY_REF_SPLICE YES_LDAS 0.1654 GT 1.7968 AG 1.9086 ENST00000582376.1 1-201 ENST00000579324.5 262-1635 chr17|-|[2]75246509-75246584[2]|[1]75246712-75246796[1]|[0]75261548-75261587[0]<==>chr17|+|[0]75225103-75225237[2]|[0]75225342-75225464[2]|[0]75225698-75225829[2]|[0]75226051-75226157[1]|[2]75231340-75231423[1]|[2]75231573-75231638[1]|[2]75231828-75231979[0]|[1]75232851-75232968[1]|[2]75233058-75233158[0]|[1]75234637-75234788[2]|[0]75235100-75235201[2]|[0]75235578-75235679[2] atggcggaggcggaaggggaaagcctggagtcctggctcaataaagccaccaatccttccaaccgccaggaggactgggaatacataattggcttctgtgatcagatcaacaaggagctggaagggccacagatcgccgtccgactgctggcccacaagatccagtccccacaggaatgggaggcgctccaggccctgacgGTGACCATCTTGGTGCTGCAGGGCCGGCTGGATGAGGCCCGACAGATGCTCTCCAAGGAAGCCGATGCCAGCCCCGCCTCTGCAGGCATATGCCGAATCATGGGGGACCTGATGAGGACAATGCCCATTCTTAGTCCCGGGAACACCCAGACACTGACAGAGCTGGAGCTGAAGTGGCAGCACTGGCACGAGGAATGTGAGCGGTACCTCCAGGACAGCACATTCGCCACCAGCCCTCACCTGGAGTCTCTCTTGAAGATTATGCTGGGAGACGAAGCTGCCTTGTTAGAGCAGAAGGAACTTCTGAGTAATTGGTATCATTTCCTAGTGACTCGGCTCTTGTACTCCAATCCCACAGTAAAACCCATTGATCTGCACTACTATGCCCAGTCCAGCCTGGACCTGTTTCTGGGAGGTGAGAGCAGCCCAGAACCCCTGGACAACATCTTGTTGGCAGCCTTTGAGTTTGACATCCATCAAGTAATCAAAGAGTGCAGCATCGCCCTGAGCAACTGGTGGTTTGTGGCCCACCTGACAGACCTGCTGGACCACTGCAAGCTCCTCCAGTCACACAACCTCTATTTCGGTTCCAACATGAGAGAGTTCCTCCTGCTGGAGTACGCCTCGGGACTGTTTGCTCATCCCAGCCTGTGGCAGCTGGGGGTCGATTACTTTGATTACTGCCCCGAGCTGGGCCGAGTCTCCCTGGAGCTGCACATTGAGCGGATACCTCTGAACACCGAGCAGAAAGCCCTGAAGGTGCTGCGGATCTGTGAGCAGCGGCAGATGACTGAACAAGTTCGCAGCATTTGTAAGATCTTAGCCATGAAAGCCGTCCGCAACAATCGCCTGGGTTCTGCCCTCTCTTGGAGCATCCGTGCTAAGGATGCCGCCTTTGCCACGCTCGTGTCAGACAGGTTCCTCAGGGATTACTGTGAGCGAGGCTGCTTTTCTGATTTGGATCTCATTGACAACCTGGGGCCAGCCATGATGCTCAGTGACCGACTGACATTCCTGGGAAAGTATCGCGAGTTCCACCGTATGTACGGGGAGAAGCGTTTTGCCGACGCAGCTTCTCTCCTTCTGTCCTTGATGACGTCTCGGATTGCCCCTCGGTCTTTCTGGATGACTCTGCTGACAGACGCCTTGCCCCTTTTGGAACAGAAACAGGTGATTTTCTCAGCAGAACAGACTTATGAGTTGATGCGGTGTCTGGAGGACTTGACGTCAAGAAGACCTGTGCATGGAGAATCTGATACCGAGCAGCTCCAGGATGATGACATAGAGACCACCAAGGTGGAAATGCTGAGACTTTCTCTGGCACGAAATCTTGCTCGGGCAATTATAAGAGAAGGCTCACTGGAAGGTTCCTGA MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVTILVLQGRLDEARQMLSKEADASPASAGICRIMGDLMRTMPILSPGNTQTLTELELKWQHWHEECERYLQDSTFATSPHLESLLKIMLGDEAALLEQKELLSNWYHFLVTRLLYSNPTVKPIDLHYYAQSSLDLFLGGESSPEPLDNILLAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHCKLLQSHNLYFGSNMREFLLLEYASGLFAHPSLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHRMYGEKRFADAASLLLSLMTSRIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYELMRCLEDLTSRRPVHGESDTEQLQDDDIETTKVEMLRLSLARNLARAIIREGSLEGS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28354 NT5DC3::TTC41P ENSG00000111696.12::ENSG00000214198.8 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NT5DC3 ENSG00000111696.12 protein_coding - - chr12:103770453-103841234:- chr12:103798587:- chr12:104164231-104235012:- chr12:104192365:- TTC41P ENSG00000214198.8 transcribed_unitary_pseudogene - - chr12:103843749-103930211:- chr12:103906307:- chr12:104237527-104323989:- chr12:104300085:- chr12:103798027,chr12:103798029 chr12:103906795,chr12:103906794 NA NA chr12:104191805,chr12:104191807 chr12:104300573,chr12:104300572 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 12 13 12 13 INCL_NON_REF_SPLICE YES_LDAS 0.2954 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28355 PRMT3::RBM4B ENSG00000185238.13::ENSG00000173914.12 HCT15 SRR8615281 SRR8639146 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 152 FALSE NA FALSE NA PRMT3 ENSG00000185238.13 protein_coding + + chr11:20387558-20509338:+ chr11:20389826:+ chr11:20409104-20530884:+ chr11:20411372:+ RBM4B ENSG00000173914.12 protein_coding - - chr11:66664998-66677887:- chr11:66669291:- chr11:66432469-66445358:- chr11:66436762:- chr11:20392145 chr11:66675813 NA NA chr11:20413691 chr11:66443284 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ANM3_C2H2_Zf|24-37|3.9^ANM3_zf-C2H2|49-66|4.1e-14^zf-C2H2_2|50-77|3.3e-06^PRMT5_C|68-91|9.1^ANM3_C2H2_Zf|78-123|1.2e-24^Methyltransf_12|173-213|3.5^TehB-PARTIAL|233-247~|2.4e-05^PRMT5-PARTIAL|236-247~|4.6e-05^Methyltransf_9-PARTIAL|240-247~|1.1e-11^Methyltransf_23-PARTIAL|240-247~|6.6e-08^CMAS-PARTIAL|246-247~|0.00012 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:46.16Mb] 11 26 11 25.83 ONLY_REF_SPLICE YES_LDAS 0.4352 GT 1.9086 AG 1.7968 ENST00000331079.11 1-247 ENST00000310046.9 413-1080 chr11|+|[0]20387747-20387774[0]|[1]20388019-20388154[1]|[2]20389744-20389826[0]<==>chr11|-|[2]66668624-66669291[1] atgtgctcgttagcgtcaggcgctaccggcggccggggcgctgtggagaatgaggaggacctgccagaactgtcggacagcggggacgaggccgcctgggaggatgaggacgatgcagatctcccccacggcaagcagcagaccccctgcctgttctgtaacaggttattcacatctgctgaagaaacattttcacactgtaagtctgagcatcagtttaatattgacagcatggttcataaacatgGCAAAAGAATGCATGTGCAGTTGTCCACAAGCCGGCTTCGGACTGCCCCTGGTATGGGAGACCAGAGTGGCTGCTATCGGTGTGGGAAAGAAGGGCACTGGTCCAAAGAGTGCCCAGTAGATCGTACGGGTCGTGTGGCAGACTTTACTGAGCAGTATAATGAACAATATGGAGCAGTTCGAACACCTTACACCATGGGCTACGGGGAATCCATGTATTACAACGATGCATATGGAGCACTCGACTACTATAAGCGATACCGGGTCCGCTCTTATGAGGCAGTAGCAGCGGCGGCAGCGGCTTCTGCATACAACTACGCAGAGCAGACCATGTCCCATCTGCCTCAAGTCCAAAGCACAACTGTGACCAGCCACCTCAACTCTACTTCTGTTGATCCCTATGACAGACACCTATTGCCAAACTCTGGCGCTGCTGCCACTTCAGCTGCTATGGCTGCTGCTGCAGCCACCACTTCCTCCTACTATGGAAGGGACAGGAGCCCACTGCGTCGTGCTGCAGCCATGCTCCCCACAGTTGGAGAGGGCTACGGTTATGGGCCAGAGAGTGAATTATCTCAGGCTTCCGCAGCTACACGGAATTCTCTGTATGACATGGCCCGGTATGAACGGGAGCAGTATGTGGACCGAGCCCGGTACTCAGCCTTTTAA MCSLASGATGGRGAVENEEDLPELSDSGDEAAWEDEDDADLPHGKQQTPCLFCNRLFTSAEETFSHCKSEHQFNIDSMVHKHGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAATTSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRARYSAF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28360 COMMD10::AP3S1 ENSG00000145781.9::ENSG00000177879.17 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 155 FALSE NA FALSE NA COMMD10 ENSG00000145781.9 protein_coding + + chr5:116085016-116412762:+ chr5:116092700:+ chr5:115420713-115748459:+ chr5:115428397:+ AP3S1 ENSG00000177879.17 protein_coding + + chr5:115841592-115914081:+ chr5:115895087:+ chr5:115177289-115249778:+ chr5:115230784:+ chr5:116108924,chr5:116108925 chr5:115873780,chr5:115873778 NA NA chr5:115444621,chr5:115444622 chr5:115209477,chr5:115209475 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame COMM_HN|17-114|2.6e-22^COMMD9_N|36-89|0.00014^COMM_domain|50-70|0.57^Dpoe2NT|55-57|0.8^Dpoe2NT|95-129|0.025^COMM_domain|132-194|4.5e-19^COMM_HN|159-175|0.21^COMMD9_N|159-195|0.014^Dpoe2NT|164-197|0.00083 none ["GTEx_recurrent_StarF2019","DepMap2023","ChimerSeq","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","ChimerPub","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr5:0.17Mb] 200 226 200 226 ONLY_REF_SPLICE YES_LDAS 5.0777 GT 1.9329 AG 1.8256 ENST00000274458.9 1-399 ENST00000316788.12 274-582 chr5|+|[0]116085053-116085093[1]|[2]116087497-116087587[2]|[0]116091079-116091189[2]|[0]116092545-116092700[2]<==>chr5|+|[0]115895087-115895158[2]|[0]115902885-115902992[2]|[0]115913362-115913490[2] atggcggtccccgcggcgctgatcctacgggagagccccagcatgaagaaagcagtgtcactgataaatgcaatagatacaggaagatttccacggttgctcactcggattcttcaaaaacttcacctgaaggctgagagcagtttcagtgaagaagaggaagaaaaacttcaagcggcattttctctagagaaacaagatcttcacctagttcttgaaacaatatcatttattttagaacaggcagtgtatcacaatgtgaagccagcagctttgcagcagcaattagagaacattcatcttagacaagacaaagctgaagcatttgtcaatacgtggtcttctatgggtcaagaaacagttgaaaagttccggcagagaattctggctccctgtaagGTATTTGTGGAAACATTAGACAAATGTTTTGAAAATGTCTGTGAGCTGGATTTGATTTTCCATGTAGACAAGGTTCACAATATTCTTGCAGAAATGGTGATGGGGGGAATGGTATTGGAGACAAATATGAATGAGATTGTTACACAAATTGATGCACAAAATAAGCTGGAAAAATCTGAGGCTGGCTTAGCAGGAGCTCCAGCCCGTGCTGTATCAGCTGTAAAGAATATGAATCTTCCTGAGATCCCAAGAAATATTAACATTGGTGACATCAGTATAAAAGTGCCAAACCTGCCCTCTTTTAAATAA MAVPAALILRESPSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKSEAGLAGAPARAVSAVKNMNLPEIPRNINIGDISIKVPNLPSFK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Brain exact TRUE Bladder Urothelial Carcinoma,Brain Lower Grade Glioma,Brain Lower Grade Glioma,Bladder Urothelial Carcinoma BLADDER,CENTRAL_NERVOUS_SYSTEM,CENTRAL_NERVOUS_SYSTEM,BLADDER no_match 115428397,115428397,115428397,115428397 TRUE,TRUE,TRUE,TRUE 115230784,115230784,115230784,115230784 TRUE,TRUE,TRUE,TRUE YES,YES,YES,YES In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28361 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE FALSE NA TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3889728:+ chr20:3869486-3910534:+ chr20:3870375:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.01Mb];LOCAL_REARRANGEMENT:+:[12716] 40 15 40 9.49 ONLY_REF_SPLICE YES_LDAS 0.5899 GT 1.5656 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28366 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 157 TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3889932:+ chr20:3869486-3910534:+ chr20:3870579:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.01Mb];LOCAL_REARRANGEMENT:+:[12716] 8 18 8 3.38 ONLY_REF_SPLICE YES_LDAS 0.1357 GT 1.6049 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28367 PANK2::MAVS ENSG00000125779.24::ENSG00000088888.18 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 156 TRUE 265 TRUE 105 PANK2 ENSG00000125779.24 protein_coding + + chr20:3888839-3929887:+ chr20:3891411:+ chr20:3869486-3910534:+ chr20:3872058:+ MAVS ENSG00000088888.18 protein_coding + + chr20:3846799-3876123:+ chr20:3854558:+ chr20:3827446-3856770:+ chr20:3835205:+ chr20:3903467,chr20:3903470,chr20:3903469 chr20:3853850,chr20:3853796,chr20:3853796 NA NA chr20:3884114,chr20:3884117,chr20:3884116 chr20:3834497,chr20:3834443,chr20:3834443 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.01Mb];LOCAL_REARRANGEMENT:+:[12716] 6 24 6 11.07 ONLY_REF_SPLICE YES_LDAS 0.2034 GT 1.8256 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28371 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 HCT116 SRR8615282 SRR8639145 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 158 FALSE NA FALSE NA LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72712981:- chr17:70642088-71088851:- chr17:70709120:- chr17:72552837,chr17:72552842 chr17:72723052,chr17:72723051 NA NA chr17:70548977,chr17:70548982 chr17:70719191,chr17:70719190 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[5477] 2 17 2 11.33 ONLY_REF_SPLICE YES_LDAS 0.1588 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28374 PPP2R3A::GCNT2 ENSG00000073711.11::ENSG00000111846.20 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 163 FALSE NA FALSE NA PPP2R3A ENSG00000073711.11 protein_coding + + chr3:135965728-136147894:+ chr3:135965849:+ chr3:135684570-135866736:+ chr3:135684691:+ GCNT2 ENSG00000111846.20 protein_coding + + chr6:10492223-10629368:+ chr6:10527474:+ chr6:10492456-10629601:+ chr6:10527707:+ chr3:135975734 chr6:10519415 NA NA chr3:135694576 chr6:10519648 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr6] 35 5 35 4.85 ONLY_REF_SPLICE YES_LDAS 0.4339 GT 1.5058 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28376 PPP2CB::TEX15 ENSG00000104695.13::ENSG00000133863.9 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 162 FALSE NA FALSE NA PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30812320:- chr8:30631973-30671830:- chr8:30669836:- TEX15 ENSG00000133863.9 protein_coding - - chr8:30831544-30913008:- chr8:30849316:- chr8:30689060-30770524:- chr8:30706832:- chr8:30806225 chr8:30854748 NA NA chr8:30663741 chr8:30712264 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame STPPase_N|22-42|2.1e-08 DUF3715|929-996|0.99^DUF3715|1538-1613|0.69^TEX15|1923-2157|1.1e-144^TEX15|2363-2491|1.2e-15^TEX15|2704-2775|2 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];LOCAL_REARRANGEMENT:-:[17230] 30 12 30 12 ONLY_REF_SPLICE YES_LDAS 0.4574 GT 1.8892 AG 1.9656 ENST00000518564.1 1-102 ENST00000638951.1 863-9531 chr8|-|[2]30812320-30812421[0]<==>chr8|-|[2]30833286-30833323[1]|[0]30836803-30838061[2]|[1]30839906-30839964[0]|[2]30842004-30849316[1] atggacgacaaggcgttcaccaaggagctggaccagtgggtcgagcagctgaacgagtgtaagcagctgaacgagaaccaagtgcggacgctgtgcgagaagAAAGGACATGCTCTCTGAATAACTGTACAGTGGCCAAAAGATTTGGAAAAGGAAAAGATGCTACTGTCACCTTTGTGCATTTCAAGAAACCTGTAGATCCATTTGTTCAAGAAAACTGTTTATGCAATGCACTAAATTCAGAGATAAATCCTTTCATCTCAAATATTTCTAACTCCTATGGAAATGTACAAAATGGAAACATTTCTATACCTGAAACATACAGTGGACAGACAGAGCACAGTTTAGCAGAAATTAGAGACACTTCTCAAGTACTTGCACATGATTCAGACATTTCACTTATGCCCAGTGATGCCAAAGACAGTGTTAATGGTGACCTTTTGTTAAATTGGACAAGTCTTAAAAATATTTTAAGTGGTCTTAATGCTTCTTTTCCTCTTCACAACAATACTGGCTCAAGCACAGTCACTACTTCAAAATCCATCAAAGACCCAAGACTGATGAGGAGAGAAGAAAGTATGGGAGAACAGAGTAGTACTGCAGGCTTAAATGAGGTTTTGCAATTTGAGAAGAGTTCAGATAATGTTAATTCAGAAATAAAATCGACACCATCTAATTCTGCCTCCTCCTCAGAAGTTGTCCCTGGTGATTGTGCTGTTCTTACTAATGGTTTGGATACCCCTTGCTTTAAAACTTCTGTTAATGATTCACAATCTTGGGCTCACAACATGGGCTCTGAGGACTATGACTGTATACCTCCCAATAAAGTTACCATGGCAGGGCAATGTAAGGACCAAGGTAATTTTTCCTTCCCAATTTCTGTGTCAAATGTAGTGTCAGAGGTTGAGAACCAAAACCACAGTGAGGAGAAGGCTCAGAGAGCCCAACAGGAGTCCGGTAATGCTTATACAAAAGAGTACAGTAGTCACATTTTTCAGGACTCGCAGTCTTCTGATTTAAAAACAATTTATCAGACTGGTTGCCAAACGTCTACAGTTTTTCCACTCAAAAAGAAAGTAAGCATTGATGAATACCTTCAAAATACTGGAAAGATGAAAAACTTCGCTGACCTGGAAGACAGTTCCAAACATGAAGAAAAGCAAACTTCATGGAAAGAAATTGATAATGATTTCACTAATGAAACAAAAATCAGTCCAATAGATAATTACATTGTTTTGCACCAAGAATACAAAGAGAGTGAGAGTCATAATTCTTTTGGGAAAAGCTGTGATAAAATATTAATTACTCAAGAGTTAGAAATAACAAAATCTTCTACATCTACCATAAAGGATAAGGATGAACTAGATCATCTAGCATTGGAATGGCAAATTACTCCAAGTTTTGAGAGCCTGTCACAAAAGCATCCTCAGCACTCTGTGGAGTATGAGGGTAACATTCATACAAGTTTAGCCATTGCTCAAAAGCTAATGGAACTGAAATTGGGGAAAATAAATCAAAATTATGCTAGCATTATAACTGAAGCTTTCCCGAAACCAAAAGACATACCCCAGGCCAAAGAAATGTTCATTGATACAGTTATTTCATCTTATAACATAGAAACAGCTCATGACAGTTCAAATTGCAGCATAACTAGAGAACATATATGTGTCCATAGGAAAAATGAAAATGAACCAGTGTCATTAGAGAACATTCAGAGAGACTATAAAGAAACTGCTTATGTTGAAGATAGGGGTCAGGATCACAATCTGTTCTGTAATTCACAGTTAAGCAATGATATATGGCTGAATGTTAATTTCAAAAAACAAACAGATAGAGAAAACCAAAATGAGGCTAAAGAGAATAGTGCTTCATGTGTAGAAAACAACATAGAGAACATATATGGAGACAAAAAGCAGGATTCTCATACAAACGAAAATTTCAGCAATATAGATGAAAAGGAGGACAAAAATTACCACAATATAGAAATTTTGAGTTCTGAAGAATTTTCTACTAAATTTAACTTGATTTGCAGAGAAGATAATGCAGTGTCAGCAGCAACTGCATTATTAGAGAGTGAAGAAGATACCATTAGTGCCGTGAAACAAAAAGATACTGAAAATACTGGAAGAAGTGTAGAGCATTTGGCTTCCACGACATTTCCCAAAACTGCAAGTTCTTCAGTGTGTGTAGCCTCAAATGCTGCAATACAGATAGCTAGTGCTACTATGCCTGCATTAAGCCTAAATAATGACGATCACCAGATATACCAGTTTAAAGAAACTTGTTCTTCTGAAAGTCCAGATTTTGGTTTGTTAGTAAAACATAGGGTTTCTGATTGTGAAATTGATACGGATAAAAATAAATCACAAGAATCATTTCATCAATCAATAAATGAGAACTTAGTTCTTCAGAGCATTGAATTGGAAAGTGAAATTGAAATAGAATTAGAAGATTGTGATGATGCTTTTATATTTCAACAAGATACACATAGCCATGAAAACATGCTTTGTGAAGAATTTGTGACCTCATATAAGGCTCTGAAGTCTCGTATCAGTTGGGAAGGTCTGTTAGCACTTGATAACGGGGAGATGGAAGTTTTGGAAAGCACCACAGGAAGGGAGAATAGTGATCAGCATTATTCTAAGGAAAGTAACTATTTTTATTCCTCTACACAAAACAATGAAACAGAACTTACCAGCCCAATTTTACTTCCAGATCTACAAATTAAAATTACTAATATATTTAGGCCAGGATTCAGCCCGACAGCTGACTCCCTTGCATTGAAAGATAGTTTTTGCACACATGTAACTGAAGCCACAAAACCGGAAATAAATAAGGAAGATGGAGAAATTCTAGGATTTGACATTTATTCCCAGCCTTTTGGTGAAAATGCAGATTATCCATGTGAAGATAAAGTTGATAATATAAGGCAAGAATCAGGGCCAGTGAGTAACTCTGAAATCTCCCTTTCTTTTGACTTGAGTCGTAATACAGATGTGAATCATACGTCTGAAAATCAGAACAGTGAATCTTTGTTTACTGAACCTTCTAATGTCACAACAATAGATGATGGAAGCAGATGTTTCTTTACAAAATCAAAAACTGACTATAATGATACCAAAAATAAAAAGGAGGTAGAATCAAGAATTAGCAAAAGGAAGCTACATATATCTTCCAGGGATCAGAACATACCACATAAAGATTTAAGACGACATAAAATTTATGGGAGAAAGAGGAGGCTAACCAGTCAAGACTCATCTGAGTGTTTCTCTTCATTATCCCAAGGACGAATTAAAACATTTTCACAGTCAGAAAAGCACATTAAGAGTGTCCTAAATATCCTAAGTGATGAAGCATCTTTATGTAAAAGCAAATGTCTTTCCAGAAAACTAGACAAAGCAGTTGTTCACTTAAAAAAAGCTCATAGAAGAGTTCACACATCTTTGCAGCTTATAACTAAAGTAGGAGAAGAAAGAAAGGGCCCATTACCAAAATCATATGCAATAATATGCAATAATTTCTGGGAAAGTTGTGACCTTCAAGGTTATAGTTCTGTGTCTCAAAGAAAATATTATTCTACTAAGCATTTTTCGTCAAAAAGAAAATATGACAAACGGAGAAAGAAAAGAGCTCCAAAAGCTGATATTTCTAAATCATTAACCCATGTGTCAAAGCACAAGTCTTATAAAACAAGTGGAGAGAAAAAATGCCTTTCTAGGAAAAGTATGGCTAGCAGTGTCTCAAAAAGTCACCCCACCACCAGTCACATGGGAGAATTTTGTAATCAAGAACATCCTGAATCACAGTTGCCTGTATCCTCCACATCCCAAAGTACAAGTCAGTCAGTTTATTATAATAGCAGTGTAAGCAATCCAAGTTTATCAGAAGAACATCAGCCCTTTTCTGGAAAAACTGCATATCTGTTTTCCCCAGACCACTCAGATGAGAAACTAATAGAAAAAGAAAATCAAATTGATACAGCATTTTTATCTAGCACTAGTAAATATGAAAAGCTTGAAAAACATTCAGCAAATCATAATGTTAAAGATGCAACTAAAGAAAACAGTTGTGACGCTAATGAAGTAATAAATGAAAGTAATTCTGTATCTTTAAGTTGCATAAAAGAAAACATAAATTCTAGTACAGGCAACGATTGTGATGCAACTTGCATAGGTCACACAAAGGCGAAAACTGACGTACTTATATCAGTCTTAGATTCAAATGTGAAGCACTTTTTAAATGATCTCTACCAACAAGGTAACCTTATTTTATCTGATTGTAAAAGAAACCTGGAAGTAAAGTGGACAGATCCTATTGAGAGACCCAAACAAAACATTATTACAGGAAACTTCCTTATGGGCCCATTAAACCTAACTTTGATAGCAAGTAAAAAGTACAGTATTCCTCAGTTATCAGCCGCTGCAGTGACAGATAGTGAGGGAGAATCTTCAAAATCTTACTTGGATAAGCAGAGAATTCTTACTGTAGATTCTTTTGCAGCATCCAGTACTGTACCACACTGTGAGCAGAGCTGTAGAGAAAAAGAGCTTCTAAAGACAGAACAGTGCTCTTCAGGTAATTGCCTCCATACAGATGGGAATGAAACAAATGTCACTGAGAATTATGAGTTGGATGTAGCATCAGGAACTGAAGAAGATAAAAGTTATGGGGAAAATATAGTGGAATTATCTTCCAGTGATAGTTCTCTGCTTTTAAAAGATAATGTAAAAGGCTCCTCTTCAGAAACATGTATTGTGAAGAAAGACACTGAGGACAGAATAACGTGGAAAGTTAAACAAGCGGAAAAAGCAAAAGATTCTGTTTACAAAAGAAGCATGACTGAAGGATCAACTGTTAATACTGAGTACAAAAATCAAAAGAATCAGATCTCAGAAGAATCCTGCTTAAATGAGAAAATTATTACAACTAACTTGATTGATTCCCATCTGAGCACTAAAAATACTACCACTGAGTCAGTCCCTTTGAAGAACACAGTTTCTAATCCGCTTAACAAAAGAGAGAAGAAGGGGGAAATTAAAGTTAGTAAAGACTCGCAGTCTGACTTGACATTACATTCAGAAATAGCCTATATTTCCAAACCAGGAATTCTAGGAGTTAATCATACGCCTATTTTACCTGCCCACTCTGAAACCTGTAAAGTCCCTACTCTTCTGAAGAAACCTGCGTCATACGTGAGTGATTTTAAAGAAAAACATTGCTCAGCTAATCATACGGCCCTTATAGCTAATCTATCTCAAATTTTGCAGAGGGCAGATGAAGCATCATCTTTGCAGATTCTACAGGAAGAAACTAAGGTTTGTCTAAATATTCTCCCTTTATTTGTGGAAGCTTTTGAAAGAAAGCAAGAATGTTCAGTTGAACAAATCCTGATTTCAAGAGAACTGTTGGTAGACCAAAACCTGTGGAATAATTGCAAACACACATTAAAACCATGTGCTGTTGACACTTTGGTAGAACTTCAAATGATGATGGAAACAATTCAATTCATTGAAAACAAAAAAAGGCACTTAGAAGGTGAACCAACATTGCGAAGCTTGCTTTGGTATGATGAAACACTGTATGCTGAGCTTCTTGGAAAACCACGTGGATTTCAACAGCAGTCTAATTTCTATCCTGGTTTCCAAGGAAGATTAAAATATAATGCATTCTGTGAGTTACAGACTTACCATGATCAATTAGTTGAATTGCTTGAAGAAACAAAAAGGGAAAAGAATTCATACTATGTATTCTTAAAGTACAAACGACAGGTTAATGAATGTGAAGCCATAATGGAGCATTGTTCCGATTGCTTTGATTTTTCTCTTTCTGTTCCATTTACCTGTGGAGTTAACTTTGGAGATAGTTTAGAAGACCTGGAAATCTTAAGAAAAAGTACTTTAAAGTTGATCAATGTATGTGGGGACTCTCCTAAAGTTCATTCGTATCCAGGAAAACAGGACCATCTGTGGATTATCATAGAAATGATCTCCTCAAAGGTTAATTTTATTAAGAACAACGAGGCAGTACGTGTTAAAATATCTCTTTATGGTCTGGAACATATCTTTTTTGATGCTGCAAAAAATCTTGTTTGGAAAGAGAGAACACAATCCTTCAGCAAAAAATACTCACAAAAGAAGGACGAAGAAAGGCTACTCAGAGTGAATAAATGTGCCTTTTCTAAGTTGCAGAAGATATATGATACTTTGTCTAAAGATTTAAACAATGAACCAATTTCCCCTATTGGGCTTGAGGAGGATACTATAATTGCTTCCAGAAAGTCAGATCATCCAATAAACGAAGCAACAATTAGCATAGAAAATTCTAAATTTAACAGTAATTTGCTTGCACACCCAGATATTTGTTGTATTAGTGAGATATTGGATCAGGCTGAATTTGCAGACCTTAAAAAATTACAGGATCTCACCTTGAGATGTACAGATCACTTAGAAATTTTAAAAAAATACTTTCAGATGCTACAAGATAATAACATGGATAATATTTTTATCACAGAAGAAAATGTTTTAGACGTGGTGATAAACCACAGCCATGAGGCTATCATTTTAAAGCCTGAAGCTATTGAAATGTATATTGAAATCGTCATGGTCTCAGAAACAATTCACTTTCTTAAAAACTCAATAGCAAAGAAACTAGACAAACAGAGGTTTCGAGGTATGCTTTGGTTTGATTTGTCACTTCTTCCTGAGCTGGTTCAGTGCCAAGAAAAAATGGCTTCTTTTTCATTTCTTAAAGATAACTCAACAGATGTTTGCCTTTGGAAAGTGATAGAGACTGCTGTTTCCGAACTTAAGAAAGATCTGGATATTATCTGCAAATATAATGAAGCTGTTAATTGCTCATATGCTATTCATTTGCTCTCAAGAGAACTTCAAGAACTTTCAGAAATAAAAAAGCTTCTGAAGAAGTCCAAGTATTTTATTTCCACATATATTGACTTTGTGCCATATATAGCATCCATAAATTATGGAAGCACTGTGACAGAGTTAGAATACAACTACAATCAATTTTCTACACTGCTGAAGAATGTAATGTCTGCCCCTAGGAAAGATTTAGGAAAAATGGCCCACATTAGGAAAGTCATGAAAACGATTGAACATATGAAGATGATATGTACTAAAAATGCTGAACTAACCATTTCCTTTTTCCTATGCCAAATGCTGTATAACAGAAGGAAGATTTTACAGCTGAAGAGAAAAGAAAAAATGAATATTCATATTGTAAAACCTGGGGAAAATAACAATAAATTTAGTATTTCTACGATGTTGCCCCCAGTATCAGAGTGCATAAACAAAAACATCTCAAATTCCTCTAAAAAACGACCGAGCACTGTAGACAAATGTGAAGACTCTCAGGAACAACAGCAAGATACTACTGTTTCCAGTTGTAAAAAGCTAAAGGTAGACATGAAAGATGTCACAAAAATCAACAGAGAAAAGGCAACATTCAAGCATCCAAGGACTACAGGATCTCATCCCAAAAGCGAAAACAAAATAGTACCAAGTTCATGTGACAGTCTGAAAAGAAATCATTTAACGCCAAAAAAGGTTGAAATGCAAAGATCACTACCTGGCTCACTTTTACCCTTAGAGAACCCAAAAGACACTTGCGCATCAAAGTCGGAAAGCAAAATAGACTTAACTGTTTCATCTGATCACTTCAGTGGACAACAGGAAAATTTAAATAGCATGAAGAAAAGAAATGTGAACTTCAGTGCTGCTGAAACAAAAAGTGATAAGAAAGATTGTGCTGCTTTTGCAATTTGTGACCAAAAAAGTGTACATGGCACATTTTCACCAGACCATGGGACGCTTTTGCAGAAATTTCTTAAAAATTCCCCAGATCCCACCCAAAAATCCTGCCTTTCTGATATAAACCCAGAAACTGATGTTTCTCTTGTGCCTGATGCGTCGGTGCTCTCAAAGCCAATTTTCTGTTTTGTGAAAGATGTCCATCCTGATCTAGAAATGAATGACACAGTCTTTGAACTTCAAGATAATGATATAGTAAATTCATCTATTAAAAATTCCTCATGCATGACTTCTCCAGAACCCATCTGTATCCAGAACAAAATTCCTACTCTGCAGATAAACAAACTACAGCCTACAGAAACTGAGTCAGAGGACAAATACATGAAGGATACATTGAATCCCAATACTGTGCATACTTTTGGAGCATCTGGGCATATAACCCTTAATGTGAATCAAGGAGCAGAGTACTCTCTTTCTGAACAACAGAATGACAAAAATTCAAAAGTCCTAATGCAGAATGCTGCCACATATTGGAATGAACTTCCACAGTCTGCATGTAACCCAACATATAATTCTTCTGAGCATTTATTTGGAACTTCATATCCATACTCTGCTTGGTGTGTTTATCAGTACAGCAACAGCAATGGCAATGCCATTACCCAGACATACCAAGGGATAACATCATATGAAGTACAGCCATCTCCTTCTGGGCTGTTGACCACAGTTGCAAGTACTGCCCAGGGCACACATTCTAATCTTCTGTACTCTCAATATTTTACTTATTTTGCGGGGGAGCCACAAGCAAATGGCTTTGTGCCAGTGAATGGGTATTTTCAATCTCAAATACCTGCTTCTAATTTTCGGCAGCCAATTTTTTCACAATATGCTTCTCATCAGCCATTACCACAAGCTACATACCCTTACCTTCCTAATCGATTTGTGCCTCCAGAAGTTCCTTGGGTTTATGCTCCATGGCACCAAGAATCCTTTCATCCAGGACACTGA MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKKGHAL*ITVQWPKDLEKEKMLLSPLCISRNL*IHLFKKTVYAMH*IQR*ILSSQIFLTPMEMYKMETFLYLKHTVDRQSTV*QKLETLLKYLHMIQTFHLCPVMPKTVLMVTFC*IGQVLKIF*VVLMLLFLFTTILAQAQSLLQNPSKTQD**GEKKVWENRVVLQA*MRFCNLRRVQIMLIQK*NRHHLILPPPQKLSLVIVLFLLMVWIPLALKLLLMIHNLGLTTWALRTMTVYLPIKLPWQGNVRTKVIFPSQFLCQM*CQRLRTKTTVRRRLREPNRSPVMLIQKSTVVTFFRTRSLLI*KQFIRLVAKRLQFFHSKRK*ALMNTFKILER*KTSLTWKTVPNMKKSKLHGKKLIMISLMKQKSVQ*IITLFCTKNTKRVRVIILLGKAVIKY*LLKS*K*QNLLHLP*RIRMN*II*HWNGKLLQVLRACHKSILSTLWSMRVTFIQV*PLLKS*WN*NWGK*IKIMLAL*LKLSRNQKTYPRPKKCSLIQLFHLIT*KQLMTVQIAA*LENIYVSIGKMKMNQCH*RTFRETIKKLLMLKIGVRITICSVIHS*AMIYG*MLISKNKQIEKTKMRLKRIVLHV*KTT*RTYMETKSRILIQTKISAI*MKRRTKITTI*KF*VLKNFLLNLT*FAEKIMQCQQQLHY*RVKKIPLVP*NKKILKILEEV*SIWLPRHFPKLQVLQCV*PQMLQYR*LVLLCLH*A*IMTITRYTSLKKLVLLKVQILVC**NIGFLIVKLIRIKINHKNHFINQ*MRT*FFRALNWKVKLK*N*KIVMMLLYFNKIHIAMKTCFVKNL*PHIRL*SLVSVGKVC*HLITGRWKFWKAPQEGRIVISIILRKVTIFIPLHKTMKQNLPAQFYFQIYKLKLLIYLGQDSARQLTPLH*KIVFAHM*LKPQNRK*IRKMEKF*DLTFIPSLLVKMQIIHVKIKLII*GKNQGQ*VTLKSPFLLT*VVIQM*IIRLKIRTVNLCLLNLLMSQQ*MMEADVSLQNQKLTIMIPKIKRR*NQELAKGSYIYLPGIRTYHIKI*DDIKFMGERGG*PVKTHLSVSLHYPKDELKHFHSQKSTLRVS*IS*VMKHLYVKANVFPEN*TKQLFT*KKLIEEFTHLCSL*LK*EKKERAHYQNHMQ*YAIISGKVVTFKVIVLCLKENIILLSIFRQKENMTNGERKELQKLIFLNH*PMCQSTSLIKQVERKNAFLGKVWLAVSQKVTPPPVTWENFVIKNILNHSCLYPPHPKVQVSQFIIIAV*AIQVYQKNISPFLEKLHICFPQTTQMRN**KKKIKLIQHFYLALVNMKSLKNIQQIIMLKMQLKKTVVTLMK**MKVILYL*VA*KKT*ILVQATIVMQLA*VTQRRKLTYLYQS*IQM*STF*MISTNKVTLFYLIVKETWK*SGQILLRDPNKTLLQETSLWAH*T*L**QVKSTVFLSYQPLQ*QIVRENLQNLTWISREFLL*ILLQHPVLYHTVSRAVEKKSF*RQNSALQVIASIQMGMKQMSLRIMSWM*HQELKKIKVMGKI*WNYLPVIVLCF*KIM*KAPLQKHVL*RKTLRTE*RGKLNKRKKQKILFTKEA*LKDQLLILSTKIKRIRSQKNPA*MRKLLQLT*LIPI*ALKILPLSQSL*RTQFLIRLTKERRRGKLKLVKTRSLT*HYIQK*PIFPNQEF*ELIIRLFYLPTLKPVKSLLF*RNLRHT*VILKKNIAQLIIRPL*LIYLKFCRGQMKHHLCRFYRKKLRFV*IFSLYLWKLLKESKNVQLNKS*FQENCW*TKTCGIIANTH*NHVLLTLW*NFK**WKQFNSLKTKKGT*KVNQHCEACFGMMKHCMLSFLENHVDFNSSLISILVSKED*NIMHSVSYRLTMIN*LNCLKKQKGKRIHTMYS*STNDRLMNVKP*WSIVPIALIFLFLFHLPVELTLEIV*KTWKS*EKVL*S*SMYVGTLLKFIRIQENRTICGLS*K*SPQRLILLRTTRQYVLKYLFMVWNISFLMLQKILFGKREHNPSAKNTHKRRTKKGYSE*INVPFLSCRRYMILCLKI*TMNQFPLLGLRRIL*LLPESQIIQ*TKQQLA*KILNLTVICLHTQIFVVLVRYWIRLNLQTLKNYRISP*DVQIT*KF*KNTFRCYKIITWIIFLSQKKMF*TW**TTAMRLSF*SLKLLKCILKSSWSQKQFTFLKTQ*QRN*TNRGFEVCFGLICHFFLSWFSAKKKWLLFHFLKITQQMFAFGK**RLLFPNLRKIWILSANIMKLLIAHMLFICSQENFKNFQK*KSF*RSPSILFPHILTLCHI*HP*IMEAL*QS*NTTTINFLHC*RM*CLPLGKI*EKWPTLGKS*KRLNI*R*YVLKMLN*PFPFSYAKCCITEGRFYS*REKKK*IFIL*NLGKITINLVFLRCCPQYQSA*TKTSQIPLKNDRAL*TNVKTLRNNSKILLFPVVKS*R*T*KMSQKSTEKRQHSSIQGLQDLIPKAKTK*YQVHVTV*KEII*RQKRLKCKDHYLAHFYP*RTQKTLAHQSRKAK*T*LFHLITSVDNRKI*IA*RKEM*TSVLLKQKVIRKIVLLLQFVTKKVYMAHFHQTMGRFCRNFLKIPQIPPKNPAFLI*TQKLMFLLCLMRRCSQSQFSVL*KMSILI*K*MTQSLNFKIMI**IHLLKIPHA*LLQNPSVSRTKFLLCR*TNYSLQKLSQRTNT*RIH*IPILCILLEHLGI*PLM*IKEQSTLFLNNRMTKIQKS*CRMLPHIGMNFHSLHVTQHIILLSIYLELHIHTLLGVFISTATAMAMPLPRHTKG*HHMKYSHLLLGC*PQLQVLPRAHILIFCTLNILLILRGSHKQMALCQ*MGIFNLKYLLLIFGSQFFHNMLLISHYHKLHTLTFLIDLCLQKFLGFMLHGTKNPFIQDT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28377 NFKBIL1::ENSG00000289406 ENSG00000204498.11::ENSG00000289406.1 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NFKBIL1 ENSG00000204498.11 protein_coding + + chr6:31546870-31558829:+ chr6:31548439:+ chr6:31514647-31526606:+ chr6:31516216:+ ENSG00000289406 ENSG00000289406.1 lncRNA - - chr6:31560244-31572700:- chr6:31560722:- chr6:31528021-31540477:- chr6:31528499:- chr6:31555231,chr6:31555232 chr6:31561481,chr6:31561480 NA NA chr6:31523008,chr6:31523009 chr6:31529258,chr6:31529257 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 21 15 21 15 ONLY_REF_SPLICE YES_LDAS 0.392 GT 1.7819 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28384 NEK7::SYK ENSG00000151414.15::ENSG00000165025.15 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 168 FALSE NA FALSE NA NEK7 ENSG00000151414.15 protein_coding + + chr1:198156994-198322420:+ chr1:198157276:+ chr1:198126124-198291550:+ chr1:198126406:+ SYK ENSG00000165025.15 protein_coding + + chr9:90801787-90898549:+ chr9:90845434:+ chr9:93564069-93660831:+ chr9:93607716:+ chr1:198181452,chr1:198181451 chr9:90844590,chr9:90844586 NA NA chr1:198150582,chr1:198150581 chr9:93606872,chr9:93606868 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SYK:Oncogene","SYK:ArcherDX_panel","SYK:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr9] 9 1 9 1 ONLY_REF_SPLICE YES_LDAS 0.1089 GT 1.7465 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek7 Other NEK Q8TDX7 TRUE FRAME_UNKNOWN Tyrosine-protein kinase SYK TK Syk P43405 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE spleen tyrosine kinase 1 MDS, peripheral T-cell lymphoma leukaemia_lymphoma oncogene, fusion translocation 28385 AGPS::HNRNPA3 ENSG00000018510.18::ENSG00000170144.22 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGPS ENSG00000018510.18 protein_coding + + chr2:177392746-177567024:+ chr2:177420358:+ chr2:178257474-178431752:+ chr2:178285086:+ HNRNPA3 ENSG00000170144.22 protein_coding + + chr2:177212694-177223959:+ chr2:177222060:+ chr2:178077422-178088687:+ chr2:178086788:+ chr2:177426876,chr2:177426877 chr2:177219763,chr2:177219761 NA NA chr2:178291604,chr2:178291605 chr2:178084491,chr2:178084489 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HNRNPA3:Oncogene"];["TCGA_StarF2019"];INTRACHROMOSOMAL[chr2:0.17Mb] 9 2 9 2 ONLY_REF_SPLICE YES_LDAS 0.1198 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28387 LDLRAD3::CD44 ENSG00000179241.13::ENSG00000026508.21 HCC95 SRR8615283 SRR8639148 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 171 FALSE NA FALSE NA LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:36098461:+ chr11:35965531-36253686:+ chr11:36120011:+ CD44 ENSG00000026508.21 protein_coding + + chr11:35138882-35232402:+ chr11:35180274:+ chr11:35160429-35253949:+ chr11:35201821:+ chr11:36164805,chr11:36164804 chr11:35179796,chr11:35179792 NA NA chr11:36186355,chr11:36186354 chr11:35201343,chr11:35201339 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ldl_recept_a|28-64|4.7e-16^DUF1668|59-106|0.079^Ldl_recept_a|70-106|2.3e-14^Ldl_recept_a|113-147|4.9e-14^DUF1668|139-184|0.052^PspB|179-205|3.3e-05^RCR|182-306|0.0013^DUF1668|223-285|0.00012 Xlink|670-686|0.62 ["CD44:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.71Mb] 8 9 8 7.45 ONLY_REF_SPLICE YES_LDAS 0.1682 GT 1.9329 AG 1.8256 ENST00000315571.6 1-454 ENST00000428726.8 234-2229 chr11|+|[0]35944099-35944144[0]|[1]36036103-36036249[0]|[1]36081653-36081778[0]|[1]36098327-36098461[0]<==>chr11|+|[2]35180274-35180407[0]|[1]35186832-35186900[0]|[1]35189835-35190065[0]|[1]35196746-35196874[0]|[1]35198121-35198246[0]|[1]35201082-35201195[0]|[1]35201671-35201787[0]|[1]35204512-35204640[0]|[1]35206112-35206243[0]|[1]35208105-35208206[0]|[1]35209965-35210054[0]|[1]35211246-35211449[0]|[1]35214852-35214914[0]|[1]35219316-35219387[0]|[1]35221654-35221732[1]|[2]35229129-35229333[2] atgtggctgctggggccgctgtgcctgctgctgagcagcgccgcggagagccagctgctccccgggaacaacttcaccaatgagtgcaacataccaggcaacttcatgtgcagcaatggacggtgcatcccgggcgcctggcagtgtgacgggctgcctgactgcttcgacaagagtgatgagaaggagtgccccaaggctaagtcgaaatgtggcccaaccttcttcccctgtgccagcggcatccattgcatcattggtcgcttccggtgcaatgggtttgaggactgtcccgatggcagcgatgaagagaactgcacagcaaaccctctgctttgctccaccgcccgctaccactgcaagaacggcctctgtattgacaagagcttcatctgcgatggacagaataactgtcaagacaacagtgatgaggaaagctgtgaaagttctcaagGTATGGGTTCATAGAAGGGCACGTGGTGATTCCCCGGATCCACCCCAACTCCATCTGTGCAGCAAACAACACAGGGGTGTACATCCTCACATCCAACACCTCCCAGTATGACACATATTGCTTCAATGCTTCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCCAATGCCTTTGATGGACCAATTACCATAACTATTGTTAACCGTGATGGCACCCGCTATGTCCAGAAAGGAGAATACAGAACGAATCCTGAAGACATCTACCCCAGCAACCCTACTGATGATGACGTGAGCAGCGGCTCCTCCAGTGAAAGGAGCAGCACTTCAGGAGGTTACATCTTTTACACCTTTTCTACTGTACACCCCATCCCAGACGAAGACAGTCCCTGGATCACCGACAGCACAGACAGAATCCCTGCTACCACTTTGATGAGCACTAGTGCTACAGCAACTGAGACAGCAACCAAGAGGCAAGAAACCTGGGATTGGTTTTCATGGTTGTTTCTACCATCAGAGTCAAAGAATCATCTTCACACAACAACACAAATGGCTGGTACGTCTTCAAATACCATCTCAGCAGGCTGGGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATGATGAAGATTTTATCTCCAGCACCATTTCAACCACACCACGGGCTTTTGACCACACAAAACAGAACCAGGACTGGACCCAGTGGAACCCAAGCCATTCAAATCCGGAAGTGCTACTTCAGACAACCACAAGGATGACTGATGTAGACAGAAATGGCACCACTGCTTATGAAGGAAACTGGAACCCAGAAGCACACCCTCCCCTCATTCACCATGAGCATCATGAGGAAGAAGAGACCCCACATTCTACAAGCACAATCCAGGCAACTCCTAGTAGTACAACGGAAGAAACAGCTACCCAGAAGGAACAGTGGTTTGGCAACAGATGGCATGAGGGATATCGCCAAACACCCAAAGAAGACTCCCATTCGACAACAGGGACAGCTGCAGCCTCAGCTCATACCAGCCATCCAATGCAAGGAAGGACAACACCAAGCCCAGAGGACAGTTCCTGGACTGATTTCTTCAACCCAATCTCACACCCCATGGGACGAGGTCATCAAGCAGGAAGAAGGATGGATATGGACTCCAGTCATAGTATAACGCTTCAGCCTACTGCAAATCCAAACACAGGTTTGGTGGAAGATTTGGACAGGACAGGACCTCTTTCAATGACAACGCAGCAGAGTAATTCTCAGAGCTTCTCTACATCACATGAAGGCTTGGAAGAAGATAAAGACCATCCAACAACTTCTACTCTGACATCAAGCAATAGGAATGATGTCACAGGTGGAAGAAGAGACCCAAATCATTCTGAAGGCTCAACTACTTTACTGGAAGGTTATACCTCTCATTACCCACACACGAAGGAAAGCAGGACCTTCATCCCAGTGACCTCAGCTAAGACTGGGTCCTTTGGAGTTACTGCAGTTACTGTTGGAGATTCCAACTCTAATGTCAATCGTTCCTTATCAGGAGACCAAGACACATTCCACCCCAGTGGGGGGTCCCATACCACTCATGGATCTGAATCAGATGGACACTCACATGGGAGTCAAGAAGGTGGAGCAAACACAACCTCTGGTCCTATAAGGACACCCCAAATTCCAGAATGGCTGATCATCTTGGCATCCCTCTTGGCCTTGGCTTTGATTCTTGCAGTTTGCATTGCAGTCAACAGTCGAAGAAGGTGTGGGCAGAAGAAAAAGCTAGTGATCAACAGTGGCAATGGAGCTGTGGAGGACAGAAAGCCAAGTGGACTCAACGGAGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGAGTCGTCAGAAACTCCAGACCAGTTTATGACAGCTGATGAGACAAGGAACCTGCAGAATGTGGACATGAAGATTGGGGTGTAA MWLLGPLCLLLSSAAESQLLPGNNFTNECNIPGNFMCSNGRCIPGAWQCDGLPDCFDKSDEKECPKAKSKCGPTFFPCASGIHCIIGRFRCNGFEDCPDGSDEENCTANPLLCSTARYHCKNGLCIDKSFICDGQNNCQDNSDEESCESSQGMGS*KGTW*FPGSTPTPSVQQTTQGCTSSHPTPPSMTHIASMLQLHLKKIVHQSQTCPMPLMDQLP*LLLTVMAPAMSRKENTERILKTSTPATLLMMT*AAAPPVKGAALQEVTSFTPFLLYTPSQTKTVPGSPTAQTESLLPL**ALVLQQLRQQPRGKKPGIGFHGCFYHQSQRIIFTQQHKWLVRLQIPSQQAGSQMKKMKMKETDTSVFLDQALMMMKILSPAPFQPHHGLLTTQNRTRTGPSGTQAIQIRKCYFRQPQG*LM*TEMAPLLMKETGTQKHTLPSFTMSIMRKKRPHILQAQSRQLLVVQRKKQLPRRNSGLATDGMRDIAKHPKKTPIRQQGQLQPQLIPAIQCKEGQHQAQRTVPGLISSTQSHTPWDEVIKQEEGWIWTPVIV*RFSLLQIQTQVWWKIWTGQDLFQ*QRSRVILRASLHHMKAWKKIKTIQQLLL*HQAIGMMSQVEEETQIILKAQLLYWKVIPLITHTRRKAGPSSQ*PQLRLGPLELLQLLLEIPTLMSIVPYQETKTHSTPVGGPIPLMDLNQMDTHMGVKKVEQTQPLVL*GHPKFQNG*SSWHPSWPWL*FLQFALQSTVEEGVGRRKS**STVAMELWRTESQVDSTERPASLRKWCIW*TRSRQKLQTSL*QLMRQGTCRMWT*RLGC FALSE TRUE hsa-mir-3973 chr11:36010098-36010204:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 35965694 FALSE 35198122 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28397 JPH1::NCOA2 ENSG00000104369.5::ENSG00000140396.13 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA JPH1 ENSG00000104369.5 protein_coding - - chr8:74234700-74321540:- chr8:74314861:- chr8:75146935-75233775:- chr8:75227096:- NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70296800:- chr8:71022017-71316043:- chr8:71209035:- chr8:74266546,chr8:74266554,chr8:74266566 chr8:70309348,chr8:70309345,chr8:70309306 NA NA chr8:75178781,chr8:75178789,chr8:75178801 chr8:71221583,chr8:71221580,chr8:71221541 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCOA2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:3.83Mb] 27 9 27 9 ONLY_REF_SPLICE YES_LDAS 0.3545 GT 1.7232 AG 1.6049 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 28400 ZNF274::ERVK3-1 ENSG00000171606.18::ENSG00000142396.11 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 175 FALSE NA FALSE NA ZNF274 ENSG00000171606.18 protein_coding + + chr19:58183029-58213562:+ chr19:58183442:+ chr19:58694396-58724928:+ chr19:58694809:+ ERVK3-1 ENSG00000142396.11 protein_coding + + chr19:58305374-58316812:+ chr19:58312166:+ chr19:58816740-58828178:+ chr19:58823532:+ chr19:58183711,chr19:58183710 chr19:58309403,chr19:58309399 NA NA chr19:58695078,chr19:58695077 chr19:58820769,chr19:58820765 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr19:0.09Mb];NEIGHBORS[91757] 14 11 14 5.5 ONLY_REF_SPLICE YES_LDAS 0.1921 GT 1.2729 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28402 TMEM9B::TMEM41B ENSG00000175348.11::ENSG00000166471.11 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TMEM9B ENSG00000175348.11 protein_coding - - chr11:8947202-8965011:- chr11:8948302:- chr11:8968749-8986558:- chr11:8969849:- TMEM41B ENSG00000166471.11 protein_coding - - chr11:9280654-9314636:- chr11:9295387:- chr11:9302201-9336183:- chr11:9316934:- chr11:8947840,chr11:8947843 chr11:9296363,chr11:9296363 NA NA chr11:8969387,chr11:8969390 chr11:9317910,chr11:9317910 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.32Mb] 10 3 10 3 INCL_NON_REF_SPLICE YES_LDAS 0.128 GT 1.8062 AG 1.231 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28403 ZSWIM4::RFX1 ENSG00000132003.10::ENSG00000132005.9 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 172 FALSE NA FALSE NA ZSWIM4 ENSG00000132003.10 protein_coding + + chr19:13795443-13832254:+ chr19:13813164:+ chr19:13906257-13943068:+ chr19:13923978:+ RFX1 ENSG00000132005.9 protein_coding - - chr19:13961530-14007039:- chr19:13983595:- chr19:14072342-14117851:- chr19:14094407:- chr19:13814062 chr19:13990833 NA NA chr19:13924876 chr19:14101645 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SWIM|139-174|9.1e-06^ZSWIM4-8_C|190-213|0.29^ZSWIM4-8_C|476-501|0.82^ZSWIM4-8_C|662-687|1.2^ZSWIM4-8_C|743-773|0.23^ZSWIM4-8_C|790-830|0.011^ZSWIM4-8_C|921-1097|6.4e-75 RFX1_trans_act-PARTIAL|~320-374|3.3e-64^RFX1_trans_act|407-429|0.49^RFX_DNA_binding|437-512|4e-37^RFX1_trans_act|759-773|1.7 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.13Mb] 10 9 10 8.67 ONLY_REF_SPLICE YES_LDAS 0.1839 GT 1.4716 AG 1.8295 ENST00000590508.6 1-1180 ENST00000254325.9 320-2940 chr19|+|[0]13795649-13795801[2]|[0]13799720-13799921[0]|[1]13804792-13805148[0]|[1]13808836-13808984[2]|[0]13809070-13809220[0]|[1]13812997-13813164[0]<==>chr19|-|[2]13962695-13962864[1]|[0]13962994-13963039[0]|[2]13963122-13963275[2]|[1]13963538-13963746[0]|[2]13963858-13964007[0]|[2]13965449-13965546[1]|[0]13965626-13965777[2]|[1]13966421-13966530[0]|[2]13966633-13966751[1]|[0]13968565-13968680[2]|[1]13968775-13968894[2]|[1]13969994-13970175[0]|[2]13972743-13973127[2]|[1]13977992-13978086[0]|[2]13979447-13979542[0]|[2]13980573-13980689[0]|[2]13982121-13982228[0]|[2]13983187-13983270[0]|[2]13983486-13983595[1] atggaaccccccgcggccaagcggagccggggctgccccgcgggacccgaggagcgcgatgccggggccggggccgcgcgtggccggggccggcccgaggcgctgctggacctcagcgccaagcgggtagccgagagctgggccttcgagcaggtggaggagcggttctcccgggtgcctgagcccgtccagaagcgcatcgtgttttggtcgtttccacgcagtgaacgggaaatatgtatgtactcgtcgctgggttacccgcccccagagggcgagcacgatgcccgggtgccctttacccgcgggctgcacctgctccagagcggggccgtggaccgcgtgttgcaagtgggattccacctgagcggaaacatccgcgagccagggagtcctggagagcccgagcgcctctaccatgtctccatcagctttgatcgctgcaagatcacgtccgtgagctgcggctgtgacaaccgcgacctcttctactgtgcccacgtggtggccctgtccctgtaccgcattcggcacgcccaccaggtggagctgcggctgcccatctccgagacgctctcccagatgaaccgggaccagctgcagaagttcgtgcagtacctcatcagcgcccatcacactgaggtgctgcccactgctcagcgcttggctgatgagatcctcctgctgggctccgagatcaacttggtgaatggtgccccagaccccaccgccggcgcaggaatcgaggacgccaactgctggcacctggacgaggagcagatccaggagcaggtgaagcagctactgtccaatggcggctactacggggccagccagcagctgcgctccatgttcagcaaggtgcgggagatgctgcgaatgcgggactccaacggggcgcgcatgctgattctcatgaccgagcagttcctgcaggacacgcgcctggccctgtggcggcagcagggcgcgggcatgacggacaagtgccggcagctctgggatgagctgggggccctgtgggtttgcgtcgtcctgagcccccactgcaaaccagaggaaagggcaggctggctccagctactcagcaggtgggacaagctcgacgtctgcccactggaagagggcaactactccttcgacggccccagcctgcagcccaccatggcccccgccccagAAGGTGCCATGCGGGCCAGCGAGACAGTGTCGGAGGCCAGCCCCGGCTCCACCGCCAGCCAGACCGGCGTTCCTACTCAGGTGGTTCAGCAGGTGCAGGGCACCCAGCAGCGGCTGCTGGTCCAGACGAGCGTGCAGGCCAAGCCAGGCCACGTGTCGCCCCTCCAGCTGACCAACATCCAAGTGCCCCAGCAGGCTCTTCCCACGCAGCGTCTGGTGGTGCAGAGCGCAGCCCCAGGCAGCAAAGGTGGCCAGGTCTCCCTGACGGTCCATGGTACCCAGCAGGTGCACTCGCCCCCAGAGCAGTCGCCGGTGCAGGCCAACAGCTCTTCCAGCAAGACAGCCGGGGCCCCCACGGGCACAGTGCCACAGCAGCTGCAGGTCCACGGCGTCCAGCAGAGTGTCCCCGTCACCCAAGAGAGATCTGTGGTCCAGGCCACTCCACAAGCGCCCAAACCCGGCCCGGTGCAGCCGCTGACCGTGCAGGGCCTCCAGCCAGTCCACGTGGCTCAAGAGGTGCAGCAGCTCCAGCAGGTGCCCGTCCCACACGTGTACTCCAGCCAGGTGCAGTATGTGGAGGGCGGCGATGCCAGCTACACGGCCAGTGCCATCCGTTCCAGCACCTACTCCTATCCCGAGACGCCGCTGTACACGCAGACGGCAAGCACCAGCTACTACGAGGCCGCAGGCACGGCCACCCAGGTCAGCACCCCCGCCACCTCCCAGGCGGTGGCCAGCAGTGGCTCCATGCCCATGTACGTGTCCGGCAGCCAGGTCGTCGCCAGCTCCACCAGCACTGGGGCTGGGGCCAGCAACAGCAGCGGAGGTGGTGGCAGTGGTGGTGGCGGCGGCGGCGGGGGAGGCGGTGGCGGGGGTGGCAGTGGCAGCACCGGAGGCGGCGGCAGCGGAGCAGGCACCTACGTGATCCAAGGCGGCTACATGCTGGGCAGTGCCAGCCAGTCTTACTCTCACACCACCCGTGCCTCGCCAGCCACGGTCCAGTGGCTCCTGGACAACTATGAGACGGCTGAGGGCGTGAGTCTGCCACGGAGCACCCTCTACTGCCACTACTTACTGCACTGCCAGGAGCAGAAGCTGGAGCCCGTCAACGCCGCCTCCTTCGGCAAGCTCATCCGCTCCGTCTTCATGGGCCTGCGAACCCGCCGTCTGGGCACCAGGGGCAACTCCAAGTACCACTACTATGGCCTGCGCATCAAGGCCAGCTCACCCCTGCTGCGGCTGATGGAGGACCAGCAGCACATGGCCATGCGGGGCCAGCCCTTCTCGCAGAAGCAGAGGCTCAAGCCCATCCAGAAGATGGAAGGCATGACCAACGGCGTGGCGGTGGGGCAGCAGCCGAGCACGGGGCTGTCGGACATCAGCGCCCAGGTGCAGCAGTACCAGCAATTTTTGGATGCCTCTCGGAGCCTCCCTGACTTCACAGAGCTCGACCTCCAGGGCAAGGTGCTGCCTGAGGGCGTCGGGCCCGGGGACATCAAAGCCTTCCAGGTCCTGTACCGGGAACACTGTGAGGCCATTGTCGACGTCATGGTGAACCTGCAGTTCACCCTGGTGGAGACGCTGTGGAAGACCTTCTGGAGGTACAACCTCAGCCAGCCCAGTGAGGCGCCACCGCTGGCTGTACATGACGAGGCCGAGAAGCGACTGCCCAAAGCCATCCTGGTGCTCCTCTCCAAGTTCGAGCCCGTGCTCCAATGGACCAAGCACTGTGACAACGTGCTGTACCAGGGCCTGGTGGAAATCCTCATTCCCGACGTGCTGCGGCCCATCCCCAGTGCCTTGACCCAAGCGATCCGGAACTTTGCCAAGAGCCTGGAGAGCTGGCTCACCCACGCCATGGTCAACATCCCCGAGGAGATGCTGCGGGTGAAGGTGGCCGCGGCTGGCGCCTTCGCGCAGACACTGCGGCGCTACACGTCGCTCAACCACCTGGCGCAGGCGGCGCGCGCTGTGCTGCAGAACACCGCACAGATCAACCAGATGCTGAGCGACCTCAACCGCGTGGACTTCGCCAACGTGCAGGAGCAGGCCTCGTGGGTGTGCCGCTGCGAGGACCGCGTGGTGCAGCGGCTGGAGCAGGACTTCAAGGTGACGCTGCAGCAGCAGAACTCGCTGGAGCAGTGGGCGGCCTGGCTGGACGGCGTGGTGAGCCAGGTGCTCAAGCCCTACCAGGGCAGCGCCGGCTTCCCCAAGGCCGCCAAGCTCTTCCTCCTCAAGTGGTCCTTCTACAGCTCCATGGTGATCCGGGACCTGACCCTGCGCAGCGCCGCCAGCTTCGGTTCCTTCCACCTCATCCGGCTGCTCTACGACGAGTACATGTACTACCTGATCGAGCACCGCGTAGCCCAGGCCAAGGGCGAGACCCCCATCGCCGTCATGGGCGAGTTCGCCAATCTGGCCACCTCCCTGAACCCCCTGGACCCCGACAAAGACGAGGAGGAAGAAGAGGAGGAGGAGAGCGAGGACGAGCTGCCGCAGGACATCTCACTGGCGGCTGGCGGCGAGTCACCCGCGCTGGGCCCGGAGACCCTGGAGCCGCCGGCCAAGCTGGCGCGGACTGACGCGCGCGGCCTCTTCGTGCAGGCGCTGCCCTCCAGCTAA MEPPAAKRSRGCPAGPEERDAGAGAARGRGRPEALLDLSAKRVAESWAFEQVEERFSRVPEPVQKRIVFWSFPRSEREICMYSSLGYPPPEGEHDARVPFTRGLHLLQSGAVDRVLQVGFHLSGNIREPGSPGEPERLYHVSISFDRCKITSVSCGCDNRDLFYCAHVVALSLYRIRHAHQVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLADEILLLGSEINLVNGAPDPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGYYGASQQLRSMFSKVREMLRMRDSNGARMLILMTEQFLQDTRLALWRQQGAGMTDKCRQLWDELGALWVCVVLSPHCKPEERAGWLQLLSRWDKLDVCPLEEGNYSFDGPSLQPTMAPAPEGAMRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAPTGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQEVQQLQQVPVPHVYSSQVQYVEGGDASYTASAIRSSTYSYPETPLYTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVAVGQQPSTGLSDISAQVQQYQQFLDASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATSLNPLDPDKDEEEEEEEESEDELPQDISLAAGGESPALGPETLEPPAKLARTDARGLFVQALPSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28405 ARFGEF1::SGK3 ENSG00000066777.9::ENSG00000104205.16 HCC827 SRR8615284 SRR8639147 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARFGEF1 ENSG00000066777.9 protein_coding - - chr8:67173511-67343781:- chr8:67238343:- chr8:68085746-68256016:- chr8:68150578:- SGK3 ENSG00000104205.16 protein_coding + + chr8:66712734-66862022:+ chr8:66793616:+ chr8:67624969-67774257:+ chr8:67705851:+ chr8:67237587,chr8:67224146,chr8:67224102,chr8:67224093,chr8:67224091,chr8:67224087,chr8:67224129,chr8:67224085,chr8:67237589,chr8:67237591 chr8:66787252,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66776497,chr8:66787250,chr8:66787245 NA NA chr8:68149822,chr8:68136381,chr8:68136337,chr8:68136328,chr8:68136326,chr8:68136322,chr8:68136364,chr8:68136320,chr8:68149824,chr8:68149826 chr8:67699487,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67688732,chr8:67699485,chr8:67699480 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1181 GT 1.6895 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Sgk3 AGC SGK Q96BR1 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28408 IQGAP1::IDH2-DT ENSG00000140575.13::ENSG00000259685.3 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90426266:+ chr15:90931474-91045471:+ chr15:90969498:+ IDH2-DT ENSG00000259685.3 lncRNA + + chr15:90102649-90138016:+ chr15:90133397:+ chr15:90645881-90681248:+ chr15:90676629:+ chr15:90427404,chr15:90427678,chr15:90427404 chr15:90125208,chr15:90125245,chr15:90125205 NA NA chr15:90970636,chr15:90970910,chr15:90970636 chr15:90668440,chr15:90668477,chr15:90668437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 44 19 44 19 ONLY_REF_SPLICE YES_LDAS 0.8719 GT 1.7465 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28410 CDC73::ENSG00000289995 ENSG00000134371.14::ENSG00000289995.1 EFO27 SRR8615287 SRR8639154 OVARY carcinoma (mucinous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000289995 ENSG00000289995.1 lncRNA + + chr1:192609359-192634544:+ chr1:192634009:+ chr1:192578489-192603674:+ chr1:192603139:+ chr1:193129622 chr1:192625965 NA NA chr1:193098752 chr1:192595095 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC73:Oncogene","CDC73:FoundationOne_panel","CDC73:ArcherDX_panel"] 12 17 12 17 ONLY_REF_SPLICE YES_LDAS 0.4014 GT 1.9086 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 28413 ZFYVE9::USP33 ENSG00000157077.16::ENSG00000077254.14 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 177 FALSE NA FALSE NA ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52233276:+ chr1:52607761-52814343:+ chr1:52698948:+ USP33 ENSG00000077254.14 protein_coding - - chr1:77695987-77759852:- chr1:77713281:- chr1:78161672-78225537:- chr1:78178966:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:25.35Mb] 118 70 118 70 ONLY_REF_SPLICE YES_LDAS 2.104 GT 1.7232 AG 1.9899 ENST00000371591.2 1-70 ENST00000357428.5 2309-2829 chr1|+|[0]52233207-52233276[0]<==>chr1|-|[2]77697317-77697474[1]|[0]77697863-77697931[1]|[0]77701369-77701471[0]|[2]77711747-77711855[2]|[1]77713200-77713281[1] atggagaattacttccaagcagaagcttacaacctggacaaggtgttagatgaatttgaacaaaacgaagGTGTTCCTCCAAGAAAAGCTGGTTATATTGAAGACCTGGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTATATAGCAGGTATGGTGGAGGACCAGCTGTCAACCATCTGTACATTTGTCATACTTGCCAAATTGAGGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGGCTTAACAGAGCGTTCCAAAAAGAGGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAGATCCTCCAGGTCCTATTGACAATACTAAGATTGCAGTCACTAAATGTGGTAATGTGATGCTTAGGCAAGGAGCAGATTCTGGCCAGATTTCTGAAGAAACATGGAATTTTCTGCAGTCTATTTATGGTGGAGGGCCTGAAGTTATCCTGCGACCTCCGGTTGTTCATGTTGATCCAGATATACTTCAAGCAGAAGAAAAAATTGAAGTAGAAACTCGGTCTTTGTAA MENYFQAEAYNLDKVLDEFEQNEGVPPRKAGYIEDLVLMLPQNIWDNLYSRYGGGPAVNHLYICHTCQIEAEKIEKRRKTELEIFIRLNRAFQKEDSPATFYCISMQWFREWESFVKGKDGDPPGPIDNTKIAVTKCGNVMLRQGADSGQISEETWNFLQSIYGGGPEVILRPPVVHVDPDILQAEEKIEVETRSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28414 FBRS::ZNF771 ENSG00000156860.16::ENSG00000179965.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 176 FALSE NA FALSE NA FBRS ENSG00000156860.16 protein_coding + + chr16:30658431-30670810:+ chr16:30667622:+ chr16:30669752-30682131:+ chr16:30678943:+ ZNF771 ENSG00000179965.12 protein_coding + + chr16:30407414-30431108:+ chr16:30428880:+ chr16:30418735-30442429:+ chr16:30440201:+ chr16:30668164,chr16:30668165 chr16:30422693,chr16:30422686 NA NA chr16:30679485,chr16:30679486 chr16:30434014,chr16:30434007 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Auts2|9-36|0.049^Auts2|90-90|1^Auts2|387-395|1^Auts2|602-802|5.7e-78^Auts2|931-970|1 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.23Mb] 91 69 91 69 ONLY_REF_SPLICE YES_LDAS 1.7906 GT 1.7968 AG 1.8323 ENST00000356166.11 1-2074 ENST00000566625.2 142-159 chr16|+|[0]30659519-30659977[2]|[0]30660263-30660442[2]|[0]30661180-30661215[2]|[0]30661304-30661333[2]|[0]30662420-30662468[0]|[1]30662559-30662859[1]|[2]30664215-30664516[0]|[1]30664715-30664920[2]|[0]30665035-30665079[2]|[0]30665306-30665401[2]|[0]30665638-30665706[2]|[0]30666512-30666541[2]|[0]30666919-30666990[2]|[0]30667320-30667437[0]|[1]30667542-30667622[0]<==>chr16|+|[0]30428880-30428897[2] atggagacggcagcggccgcggccccgggtccgggctgggcagcagagggggagcgccgacggcggcgctgctcgcgccgagaccgagaccgggagcagcggcgccgccgaggtccaggcggcgacgcgccccgggccctgttggccgccccgcgcggctcctcgtcctcgtcgtcgccgccgccgcccgccaggccttggtcgtcagcttcgtctggagagcggcctgggggcccgagacgccggcggccccgtccgagacctcgacccccgcgaccccgagctcggaagcggcctgccggctcgggcagccgcggggaggaagaggaggaggaggaggaggaggggggcgcagacgacggcgaagccgaggaggagcctgaggaggaggaagaggaggaggaggacttgatcgatggcttcgccatcgccagcttcgccaccctcgaggccttgcagaaggatgcatctcttcagcccccagagcgactggaacatcggctgaagcattctgggaagcggaaaagggggggctccagtggggccaccggggagccaggggacagctctgatcgagagcctggccggccccctggggatcgggcccgaaaatggcccaataagcggagaagaaaagaggcgtcctcccgtcactctctggaagctggatacatatgtgacgcggaaagtgatctggacgagagggtctccgatgatgacctcgacccatcctttactgtctcaaccagcaaagcctcgggcccccacggcgccttcaatgggaactgtgaagcaaaactctccgtggtccctaaagtgtcgggcctggagcggagccaagaacagcccccggggcccgacccgctgctagtgcctttccccccaaaggaaccaccgcctccaccggtccctcggcctcctgtctcaccccctgcacccctgccggccactcccagtctgccacccccaccccagccccagctgcagcttcgggtctcacccttcggcctccgcacttctccatatggcagcagcctggacctcagcactggcagctcttcacggccgccccccaaggccccggcccctcccgtggctcagcctcccccctcatcatcctcttcgtcctcctcctcctcatctgcctcctcctcgtccgcgcagctcacccaccggcccccgacgccctcactgcccctgcctttgtccacccacagctttccccctcccgggctgcggccccccccaccaccccaccacccctccttgttctcccctggccccaccctgcccccacccccacccctgctgcaggtgccagggcaccctggggcctcagccgctaacgccctttctgagcaggacctgatcggccaggacctgaactctcgctacctgaatgcccagggtggccctgaggtggtgggggcagggggctcggcccggcccctggccttccagttccaccagcacaaccaccagcaccagcacacccaccagcacacccaccagcacttcaccccttatcccccgggcctgctgccaccccacggcccccacatgtttgagaaatatccaggaaagatggaaggccttttccgacataatccgtacacggccttccctcccgcagtgcccgggctgcctccgggcctcccgccggccgtctcctttggctccctgcagggggccttccagcccaagagcacgaaccctgagctgccaccacgactggggccggtgccgagcgggctctcccagaaggggacacagatccccgaccatttccggccacctttgaggaaaccagggaagtggtgtgccatgcacgtgcgtgtggcttacatgatcctgagacaccaggagaaaatgaagggtgactcccacaagcttgactttcggaatgacctcctgccctgccttccggggccctatggggccctgccccctgggcaggagctctcccacccggcctccctcttcactgcgactggtgccgtccacgctgcagccaaccctttcacggcagctcccggggcccacggacccttcctgagccccagcacccacattgGAGGCTGAGTGCCCCTAG METAAAAAPGPGWAAEGERRRRRCSRRDRDREQRRRRGPGGDAPRALLAAPRGSSSSSSPPPPARPWSSASSGERPGGPRRRRPRPRPRPPRPRARKRPAGSGSRGEEEEEEEEEGGADDGEAEEEPEEEEEEEEDLIDGFAIASFATLEALQKDASLQPPERLEHRLKHSGKRKRGGSSGATGEPGDSSDREPGRPPGDRARKWPNKRRRKEASSRHSLEAGYICDAESDLDERVSDDDLDPSFTVSTSKASGPHGAFNGNCEAKLSVVPKVSGLERSQEQPPGPDPLLVPFPPKEPPPPPVPRPPVSPPAPLPATPSLPPPPQPQLQLRVSPFGLRTSPYGSSLDLSTGSSSRPPPKAPAPPVAQPPPSSSSSSSSSSSASSSSAQLTHRPPTPSLPLPLSTHSFPPPGLRPPPPPHHPSLFSPGPTLPPPPPLLQVPGHPGASAANALSEQDLIGQDLNSRYLNAQGGPEVVGAGGSARPLAFQFHQHNHQHQHTHQHTHQHFTPYPPGLLPPHGPHMFEKYPGKMEGLFRHNPYTAFPPAVPGLPPGLPPAVSFGSLQGAFQPKSTNPELPPRLGPVPSGLSQKGTQIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSHKLDFRNDLLPCLPGPYGALPPGQELSHPASLFTATGAVHAAANPFTAAPGAHGPFLSPSTHIGG*VPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28415 KIRREL1::ZFYVE9 ENSG00000183853.18::ENSG00000157077.16 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 178 FALSE NA FALSE NA KIRREL1 ENSG00000183853.18 protein_coding + + chr1:157993273-158100262:+ chr1:157993728:+ chr1:157963063-158070052:+ chr1:157963518:+ ZFYVE9 ENSG00000157077.16 protein_coding + + chr1:52142089-52348671:+ chr1:52237488:+ chr1:52607761-52814343:+ chr1:52703160:+ chr1:158019847,chr1:158019846 chr1:52235165,chr1:52235161 NA NA chr1:157989637,chr1:157989636 chr1:52700837,chr1:52700833 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame I-set-PARTIAL|22-52~|1.9e-10^Ig_3-PARTIAL|24-52~|4e-09^V-set-PARTIAL|25-52~|1e-07^ig-PARTIAL|26-52~|0.019^Ig_2-PARTIAL|27-52~|0.00022^C1-set-PARTIAL|34-52~|0.05 FYVE|135-163|0.53^FYVE|355-361|2.2^SARA|550-575|0.63^FYVE|695-757|1.3e-22^SARA|773-811|8.9e-23^SARA_C|1048-1400|2.3e-179 ["CCLE_StarF2019"] 36 6 36 6 ONLY_REF_SPLICE YES_LDAS 0.47 GT 1.8256 AG 1.8323 ENST00000359209.11 1-52 ENST00000371591.2 71-4278 chr1|+|[0]157993677-157993728[0]<==>chr1|+|[1]52237488-52239595[2]|[0]52263773-52263872[0]|[1]52266655-52266831[0]|[1]52268463-52268632[2]|[0]52274464-52274584[0]|[1]52278492-52278614[0]|[1]52281661-52281816[0]|[1]52293453-52293677[0]|[1]52295895-52295977[2]|[0]52303821-52303925[2]|[0]52332768-52332918[0]|[1]52334688-52334768[0]|[1]52337772-52337934[1]|[2]52340126-52340231[2]|[0]52344768-52344944[2]|[0]52346060-52346221[2] atgctgagcctcctcgtctggatcctcactctctccgatactttctcccaagATGAAACAGTTTCTTCTACTTTATTGGATACAAAGTGGAATAAGATTCTAGATCCCCCTTCTCACCGGCTGTCATTTAACCCTACTTTGGCCAGTGTGAATGAATCTGCAGTTTCTAATGAGTCACAACCACAACTGAAAGTCTTCTCCCTGGCTCATTCAGCTCCCCTGACCACAGAGGAAGAGGATCACTGTGCTAATGGACAGGACTGTAATCTAAATCCAGAGATTGCCACAATGTGGATTGATGAAAATGCTGTTGCAGAAGACCAGTTAATTAAGAGAAACTATAGTTGGGATGATCAATGCAGTGCTGTTGAAGTGGGAGAGAAGAAATGTGGAAACCTGGCTTGTCTGCCAGATGAGAAGAATGTTCTTGTTGTAGCCGTCATGCATAACTGTGATAAAAGGACATTACAAAACGATTTACAGGATTGTAATAATTATAATAGTCAATCCCTTATGGATGCTTTTAGCTGTTCACTGGATAATGAAAACAGACAAACTGATCAATTTAGTTTTAGTATAAATGAGTCCACTGAAAAAGATATGAATTCAGAGAAACAAATGGATCCATTGAATAGACCGAAAACAGAGGGGAGATCTGTTAACCATCTGTGTCCTACTTCATCTGATAGTCTAGCCAGTGTCTGTTCCCCTTCACAATTAAAGGATGACGGAAGTATAGGTAGAGACCCCTCCATGTCTGCGATTACAAGTTTAACGGTTGATTCAGTAATCTCATCCCAGGGAACAGATGGATGTCCTGCTGTTAAAAAGCAAGAGAACTATATACCAGATGAGGACCTCACTGGCAAAATCAGCTCTCCTAGGACAGATCTAGGGAGTCCAAATTCCTTTTCCCACATGAGTGAGGGGATTTTGATGAAAAAAGAGCCAGCAGAGGAGAGCACCACTGAAGAATCCCTCCGGTCTGGTTTACCTTTGCTTCTCAAACCAGACATGCCTAATGGGTCTGGAAGGAATAATGACTGTGAACGGTGTTCAGATTGCCTTGTGCCTAATGAAGTTAGGGCTGATGAAAATGAAGGTTATGAACATGAAGAAACTCTTGGCACTACAGAATTCCTTAATATGACAGAGCATTTCTCTGAATCTCAGGACATGACTAATTGGAAGTTGACTAAACTAAATGAGATGAATGATAGCCAAGTAAACGAAGAAAAGGAAAAGTTTCTACAGATTAGTCAGCCTGAGGACACTAATGGTGATAGTGGAGGACAGTGTGTTGGATTGGCAGATGCAGGTCTAGATTTAAAAGGAACTTGCATTAGTGAAAGTGAAGAATGTGATTTCTCCACTGTTATAGACACACCAGCAGCAAATTATCTATCTAATGGTTGTGATTCCTATGGAATGCAAGACCCAGGTGTTTCTTTTGTTCCAAAGACTTTACCCTCCAAAGAAGATTCAGTAACAGAAGAAAAAGAAATAGAGGAAAGCAAGTCAGAATGCTACTCAAATATTTATGAACAGAGAGGAAATGAGGCCACAGAAGGGAGTGGACTACTTTTAAACAGCACTGGTGACCTAATGAAGAAAAATTATTTACATAATTTCTGTAGTCAAGTTCCATCAGTGCTTGGGCAATCTTCCCCCAAGGTAGTAGCAAGCCTGCCATCTATCAGTGTTCCTTTTGGTGGTGCAAGACCCAAGCAACCTTCTAATCTTAAACTTCAAATTCCAAAGCCATTATCAGACCATTTACAAAATGACTTTCCTGCAAACAGTGGAAATAATACTAAAAATAAAAATGATATTCTTGGGAAAGCAAAATTAGGGGAAAACTCAGCAACCAATGTATGCAGTCCATCTTTGGGAAACATCTCTAATGTCGATACAAATGGGGAACATTTAGAAAGTTATGAGGCTGAGATCTCCACTAGACCATGCCTTGCATTAGCTCCAGATAGCCCAGATAATGATCTCAGAGCTGGTCAGTTTGGAATTTCTGCCAGAAAGCCATTCACCACTCTGGGTGAGGTGGCTCCAGTATGGGTACCGGATTCTCAGGCTCCAAATTGCATGAAATGTGAAGCCAGGTTTACATTCACCAAAAGGAGGCATCACTGCAGAGCATGTGGGAAGGTTTTCTGTGCTTCCTGCTGTAGCCTGAAATGTAAACTGTTATACATGGACAGAAAGGAAGCTAGAGTGTGTGTAATCTGCCATTCAGTGCTAATGAATGCTCAAGCCTGGGAGAACATGATGAGTGCCTCAAGCCAGAGCCCTAACCCTAACAATCCTGCTGAATACTGTTCTACTATCCCTCCCTTGCAGCAAGCTCAGGCCTCAGGAGCTCTGAGCTCTCCACCTCCCACTGTGATGGTACCTGTGGGAGTTTTAAAGCACCCTGGAGCAGAAGTGGCTCAGCCCAGAGAGCAGAGGCGAGTTTGGTTTGCTGATGGGATCTTGCCCAATGGAGAAGTTGCTGATGCAGCCAAATTAACAATGAATGGAACTTCCTCTGCAGGAACCCTGGCTGTGTCACACGACCCAGTCAAGCCAGTAACTACCAGTCCTCTACCAGCAGAGACGGATATTTGTCTATTCTCTGGGAGTATAACTCAGGTTGGAAGTCCTGTTGGAAGTGCAATGAATCTTATTCCTGAAGATGGCCTTCCTCCCATTCTCATCTCCACTGGTGTAAAAGGAGACTATGCTGTGGAAGAGAAACCATCACAGATTTCAGTAATGCAGCAGTTGGAGGATGGTGGCCCTGACCCACTTGTATTTGTTTTAAATGCAAATTTGTTGTCAATGGTTAAAATTGTAAATTATGTGAACAGGAAGTGCTGGTGTTTCACAACCAAGGGAATGCATGCAGTGGGTCAGTCTGAGATAGTCATTCTTCTACAGTGTTTACCGGATGAAAAGTGTTTGCCAAAGGATATCTTTAATCACTTTGTGCAGCTTTATCGGGATGCTCTGGCAGGGAATGTGGTGAGCAACTTGGGACATTCCTTCTTCAGTCAAAGTTTCCTTGGCAGTAAAGAACATGGTGGATTCTTATATGTGACATCTACCTACCAGTCACTGCAAGACCTAGTACTCCCAACCCCACCTTACTTGTTTGGGATTCTTATCCAGAAATGGGAAACTCCTTGGGCTAAAGTATTTCCTATCCGTCTGATGTTGAGACTTGGAGCTGAATATCGACTTTATCCATGCCCACTATTCAGTGTCAGATTTCGGAAGCCATTGTTTGGAGAGACGGGGCATACCATCATGAATCTTCTTGCAGACTTCAGAAATTACCAGTATACCTTGCCAGTAGTTCAAGGTTTGGTGGTTGATATGGAAGTTCGGAAAACTAGCATCAAAATTCCCAGCAACAGATACAATGAGATGATGAAAGCCATGAACAAGTCCAATGAGCATGTCCTGGCAGGAGGTGCCTGCTTCAATGAAAAGGCAGACTCTCATCTTGTGTGTGTACAGAATGATGATGGAAACTATCAGACCCAGGCTATCAGTATTCACAATCAGCCCAGAAAAGTGACTGGTGCCAGTTTCTTTGTGTTCAGTGGCGCTCTGAAATCCTCTTCTGGATACCTTGCCAAGTCCAGTATTGTGGAAGATGGTGTTATGGTCCAGATTACTGCAGAGAACATGGATTCCTTGAGGCAGGCACTGCGAGAGATGAAGGACTTCACCATCACCTGTGGGAAGGCGGACGCGGAGGAACCCCAGGAGCACATCCACATCCAGTGGGTGGATGATGACAAGAACGTTAGCAAGGGTGTCGTAAGTCCTATAGATGGGAAGTCCATGGAGACTATAACAAATGTGAAGATATTCCATGGATCAGAATATAAAGCAAATGGAAAAGTAATCAGATGGACAGAGGTGTTTTTCCTAGAAAACGATGACCAGCACAATTGCCTCAGTGATCCTGCAGATCACAGTAGATTGACTGAGCATGTTGCCAAAGCTTTTTGCCTTGCTCTCTGTCCTCACCTGAAACTTCTGAAGGAAGATGGAATGACCAAACTGGGACTACGTGTGACACTTGACTCAGATCAGGTTGGCTATCAAGCAGGGAGCAATGGCCAGCCCCTTCCCTCGCAGTACATGAATGATCTGGACAGCGCCTTGGTGCCGGTGATCCATGGAGGGGCCTGCCAGCTTAGTGAGGGCCCCGTTGTCATGGAACTCATCTTTTATATTCTGGAAAACATCGTATAA MLSLLVWILTLSDTFSQDETVSSTLLDTKWNKILDPPSHRLSFNPTLASVNESAVSNESQPQLKVFSLAHSAPLTTEEEDHCANGQDCNLNPEIATMWIDENAVAEDQLIKRNYSWDDQCSAVEVGEKKCGNLACLPDEKNVLVVAVMHNCDKRTLQNDLQDCNNYNSQSLMDAFSCSLDNENRQTDQFSFSINESTEKDMNSEKQMDPLNRPKTEGRSVNHLCPTSSDSLASVCSPSQLKDDGSIGRDPSMSAITSLTVDSVISSQGTDGCPAVKKQENYIPDEDLTGKISSPRTDLGSPNSFSHMSEGILMKKEPAEESTTEESLRSGLPLLLKPDMPNGSGRNNDCERCSDCLVPNEVRADENEGYEHEETLGTTEFLNMTEHFSESQDMTNWKLTKLNEMNDSQVNEEKEKFLQISQPEDTNGDSGGQCVGLADAGLDLKGTCISESEECDFSTVIDTPAANYLSNGCDSYGMQDPGVSFVPKTLPSKEDSVTEEKEIEESKSECYSNIYEQRGNEATEGSGLLLNSTGDLMKKNYLHNFCSQVPSVLGQSSPKVVASLPSISVPFGGARPKQPSNLKLQIPKPLSDHLQNDFPANSGNNTKNKNDILGKAKLGENSATNVCSPSLGNISNVDTNGEHLESYEAEISTRPCLALAPDSPDNDLRAGQFGISARKPFTTLGEVAPVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEARVCVICHSVLMNAQAWENMMSASSQSPNPNNPAEYCSTIPPLQQAQASGALSSPPPTVMVPVGVLKHPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSSAGTLAVSHDPVKPVTTSPLPAETDICLFSGSITQVGSPVGSAMNLIPEDGLPPILISTGVKGDYAVEEKPSQISVMQQLEDGGPDPLVFVLNANLLSMVKIVNYVNRKCWCFTTKGMHAVGQSEIVILLQCLPDEKCLPKDIFNHFVQLYRDALAGNVVSNLGHSFFSQSFLGSKEHGGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKVFPIRLMLRLGAEYRLYPCPLFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKIPSNRYNEMMKAMNKSNEHVLAGGACFNEKADSHLVCVQNDDGNYQTQAISIHNQPRKVTGASFFVFSGALKSSSGYLAKSSIVEDGVMVQITAENMDSLRQALREMKDFTITCGKADAEEPQEHIHIQWVDDDKNVSKGVVSPIDGKSMETITNVKIFHGSEYKANGKVIRWTEVFFLENDDQHNCLSDPADHSRLTEHVAKAFCLALCPHLKLLKEDGMTKLGLRVTLDSDQVGYQAGSNGQPLPSQYMNDLDSALVPVIHGGACQLSEGPVVMELIFYILENIV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28417 CRLF3::CHD9 ENSG00000176390.12::ENSG00000177200.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30803901:- chr17:29096406-29151710:- chr17:29130919:- CHD9 ENSG00000177200.18 protein_coding + + chr16:53054991-53329150:+ chr16:53222644:+ chr16:53088903-53363062:+ chr16:53256556:+ chr17:30803659,chr17:30803661 chr16:53221572,chr16:53221570 NA NA chr17:29130677,chr17:29130679 chr16:53255484,chr16:53255482 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GAS|15-97|0.00014^Lipoprotein_17|58-66|0.52^fn3|192-255|6.5e-08 ResIII|385-554|2.6e-10^SNF2-rel_dom|389-675|4.1e-80^DEAD|401-560|6.7e-09^Helicase_C|423-477|0.86^HDA2-3|701-846|2e-08^Helicase_C|709-822|1.1e-25^Peptidase_M10|914-962|0.0062^CHDCT2|1028-1046|0.23^CHDCT2|1199-1234|0.0011^CHDCT2|1491-1524|0.017^Peptidase_M10|1862-1910|0.0017^BRK|2009-2047|9.9e-19^BRK|2082-2125|9.8e-17 ["CHD9:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr16] 23 14 23 14 ONLY_REF_SPLICE YES_LDAS 0.4141 GT 1.9656 AG 1.5656 ENST00000324238.7 1-337 ENST00000565803.2 363-7275 chr17|-|[0]30803901-30804108[0]|[2]30824523-30824651[0]<==>chr16|+|[2]53222644-53222755[2]|[0]53226366-53226512[2]|[0]53227396-53227464[2]|[0]53227548-53227603[1]|[2]53228983-53229100[2]|[0]53231419-53231505[2]|[0]53231647-53231784[2]|[0]53235185-53235306[1]|[2]53238343-53238586[2]|[0]53242840-53243016[2]|[0]53245336-53245479[2]|[0]53245595-53245850[0]|[1]53247293-53247503[1]|[2]53249871-53250066[2]|[0]53254438-53254605[2]|[0]53255600-53255779[2]|[0]53262987-53263097[2]|[0]53267294-53267490[1]|[2]53267927-53268126[0]|[1]53273626-53273785[1]|[2]53274213-53274302[1]|[2]53285596-53285699[0]|[1]53286226-53286343[1]|[2]53287957-53288014[2]|[0]53291725-53291767[0]|[1]53292833-53293052[1]|[2]53296956-53297158[0]|[1]53303720-53304625[0]|[1]53306234-53306397[2]|[0]53307681-53307953[2]|[0]53308686-53308854[0]|[1]53314377-53314516[2]|[0]53314823-53315044[2]|[0]53318212-53318340[2]|[0]53321526-53321630[2]|[0]53324020-53324895[2] atgaggggggcgatggagctggagcctgagctgctgttgcaggaggcccgcgagaacgtggaggcagcgcagagctaccggcgggagctgggtcaccggcttgaggggctgcgtgaggcgcggaggcagatcaaagaaagtgcatcacagacaagggatgttctcaaacagcattttaatgatttaaagggaacccttggaaagctcctggatgagcgattggtgacccttttgcaagaggtggacaccattgaacaggagaccattaaaccactagatgactgccagaagctcatagaacacggagtcaacactgcagaggacttagtccgagaagCAAACTCATTATTACATTGGGTAAGAAACAAAAAAGAAAGAATGAGTCTTCAGATGAAATATCTGATGCAGAACAGATGCCACAGCATACATTAAAAGATCAAGACTCTCAAAAAAGAAGATCAAATCGACAAATTAAAAGAAAAAAATACGCAGAAGATATAGAAGGGAAGCAATCTGAAGAAGAGGTTAAAGGTTCTATGAAAATAAAAAAGAATTCAGCTCCTTTACCTGGTGAACAGCCTTTACAATTGTTTGTGGAGAATCCGAGTGAAGAAGATGCTGCAATTGTAGACAAAATTCTATCTTCTAGAACCGTAAAAAAGGAAATATCACCTGGAGTGATGATTGATACAGAAGAATTTTTTGTAAAATACAAGAATTACTCCTATCTTCACTGTGAGTGGGCCACAGAAGAGCAGCTTTTGAAAGATAAAAGGATCCAGCAGAAAATCAAACGATTCAAATTGAGACAAGCACAAAGAGCACATTTTTTTGCAGACATGGAAGAAGAACCATTTAACCCAGACTACGTTGAAGTAGACAGAGTATTAGAAGTCTCTTTTTGTGAAGATAAGGATACTGGTGAGCCTGTTATTTACTACTTAGTAAAATGGTGCTCATTGCCATATGAAGATAGTACTTGGGAACTAAAAGAAGATGTAGATCTTGCAAAAATAGAAGAGTTTGAACAACTGCAAGCTTCAAGGCCTGACACAAGACGTTTGGACCGTCCTCCTTCTAATATTTGGAAGAAAATAGATCAATCCAGGGACTATAAAAATGGCAATCAACTCAGGGAATATCAACTGGAAGGACTCAACTGGCTCTTGTTCAATTGGTACAATAGACGAAACTGCATCTTAGCAGATGAAATGGGTCTTGGCAAAACTATTCAATCAATTACATTCCTCTATGAAATCCTTCTGACTGGTATAAGAGGACCTTTCCTGATTATTGCTCCACTTTCTACTATTGCAAACTGGGAGAGAGAATTTCGTACGTGGACTGATATTAACGTTGTGGTTTATCATGGGAGCCTGATTAGCAGACAAATGATACAGCAATACGAGATGTACTTCAGGGATTCACAGGGGCGTATCATTCGAGGAGCTTACAGATTCCAAGCCATCATCACCACTTTTGAAATGATTCTTGGAGGCTGTGGAGAGCTTAATGCAATTGAATGGCGATGTGTGATTATTGATGAAGCACATAGGTTAAAAAATAAAAATTGTAAACTCTTAGAGGGCCTGAAACTCATGAATCTGGAACACAAGGTGCTTTTGACTGGCACCCCTCTCCAAAATACAGTTGAAGAACTATTTAGTCTTCTTCACTTTCTTGAACCCTTAAGGTTTCCTTCTGAATCAACATTTATGCAAGAATTTGGGGATCTGAAAACAGAGGAACAGGTACAGAAACTTCAGGCTATCCTGAAACCAATGATGTTGAGACGATTAAAAGAAGATGTGGAAAAGAAGTTGGCACCTAAAGAAGAAACCATCATTGAAGTAGAACTTACTAATATTCAAAAGAAATACTACCGGGCTATCTTGGAAAAGAACTTTTCTTTTTTATCCAAAGGAGCAGGACAAACTAATGTACCTAACTTGGTCAATACCATGATGGAGCTCAGGAAATGTTGTAATCATCCATATCTTATAAAAGGTGCTGAGGAGAAAATACTTGGAGAATTTAGAGATACTTACAATCCAGCTGCTTCTGATTTTCATCTTCAAGCAATGATCCAGTCTGCTGGTAAATTGGTCCTTATTGATAAATTGCTTCCCAAAATGAAAGCCGGAGGTCATAAAGTGCTCATCTTCTCTCAAATGGTTCGTTGCCTTGACATTCTGGAGGACTATCTCATACATAAAAGATACTTATATGAGCGAATTGATGGCAGAGTCAGAGGAAATCTTCGGCAAGCTGCTATAGATAGATTTAGTAAACCTGATTCAGATAGATTTGTTTTTCTCCTGTGTACCCGAGCTGGTGGGTTGGGCATCAACTTAACTGCAGCTGATACATGTATAATTTTTGATTCTGATTGGAATCCTCAGAATGATCTTCAGGCCCAAGCTCGTTGCCACAGAATTGGTCAGAACAAAGCAGTTAAAGTCTACAGACTGGTAACTCGTAACTCATATGAGAGAGAGATGTTTGACCGAGCCAGTTTGAAACTGGGCCTAGATAAAGCTGTGTTACAGAGCATGAGTGGAAGAGAAAGTAATGTTGGTGGTATTCAGCAGCTTTCCAAAAAGGAAATAGAAGATCTGCTTCGAAGAGGTGCTTATGGTGCTATTATGGAGGAAGAAGATGAAGGCTCTAAATTCTGCGAAGAGGATATCGATCAGATTTTACTACGTCGTACAAAAACTATTACAATTGAATCAGAAGGACGTGGGTCAACATTTGCCAAGGCGAGTTTTGTGGCATCTGGAAACCGGACAGATATTTCTTTAGATGATCCCAACTTCTGGCAAAAATGGGCTAAAAAGGCAGAAATAGATATAGAGGCCATCAGTGGCAGAAACAGCTTGGTTATTGACACTCCAAGAATTAGGAAGCAAACAAGACCTTTTAGTGCCACAAAAGATGAATTGGCTGAATTATCTGAAGCTGAAAGTGAAGGAGATGAAAAGCCCAAACTCCGGAGACCCTGTGACCGTTCCAATGGCTATGGAAGAACTGAATGCTTTAGAGTTGAGAAAAACCTGCTAGTTTATGGGTGGGGCCGATGGAGAGAGATTCTATCTCATGGCCGTTTCAAAAGGCAGCTAAATGAACACGATGTAGAGATAATTTGCCGAGCTCTCTTAGCATATTGCCTTGTTCACTACCGAGGAGATGAGAAGATTAAAGGTTTCATATGGGATCTCATTACTCCAACTGAAGATGGACAGACACGAGAGCTACAGAATCATCTAGGCCTATCAGCTCCTGTACCCAGGGGTCGAAAAGGGAAGAAAGTAAAAACTCAAACAAGCTCATTTGATATACAAAAAGCAGAATGGCTTCGAAAATATAATCCCGAGCAGCTCCTTCAAGATGAAGGCTACAAAAAACATATAAAACACCACTGTAATAAGGTTTTGCTTCGTGTGAGAATGCTGTATTATCTAAAGCAAGAAGTTATTGGAAATGAGTGTCAGAAAGTATTTGATGGAGTTGATGCAAGTGACATTGATGTTTGGGTACCAGAACCAGACCACTCAGAAGTTCCTGCTGAGTGGTGGGATTTTGATGCTGATAAGTCACTCCTTATTGGAGTTTTTAAACATGGATATGAAAAATATAACACTATTCGAGCAGACCCAGCATTATGCTTCTTGGAAAGAGTGGGAAAACCTGATGAGAAAGCAGTTGCTGCTGAACAGAGAGCGAATGATTATATGGATGGGGATGTGGAAGATCCAGAATACAAACCTGCCCCAGCCATCTTTAAAGATGATATAGAGGATGATGTTTCCTCACCAGGAGATCTTGTTATAGCAGATGGAGATGGTCAACTGATGGAGGGTGATAAAGTATATTGGCCTACTCAATCAGCTTTAACCACACGTTTGAGGCGTCTCATCACTGCATACCAGCGTACTAATAAAAACAGACAAATTCAGCAGATACAACCGACTTTCTCGGTGCCTACCAGTGTAATGCAGCCTATTTATGAGGAAGCCACTCTTAATCCTAAAATGGCAGCCAAGATAGAAAGACAGCAAAGATGGACAAGAAGAGAAGAAGCTGACTTTTATAGGGTTGTATCTACATTTGGAGTGGTTTTTGACCCTGACAGAGGCCAATTTGATTGGACAAAATTTAGAGCTATGGCTAGGCTACATAAGAAAACTGATGATAGTTTGGAAAAATATTTGTACGCATTCATGTCCATGTGTCGGAGGGTTTGTCGTCTTCCTTCCAAAGAAGAATTGGTGGATCCAAATATTTTTATCCAGCCCATCACAGAAGAACGTGCTTCTAGGACTTTGTATCGCATTGAACTTCTAAGGAAAGTACGGGAACAGGCCCTTCGACATCCACAGTTGTTTGAACGCTTGAAGCTTTGCCATCCAAATCCAGATTTACCAGTCTGGTGGGAATGTGGCCCTCATGATAGGGATTTGCTTATTGGTGCTGCCAAACACGGGGTGAGCCGAACAGACTATCACATTCTTCGTGATCCTGAACTCTCATTTATGGCAGCTCAGAGGAACTACAGTCAAAGTAAGATGGCTCATTCAAGGACTTCTACCCCACTTCTACAGCAATATCAAGTAGCACTTTCTGCTTCTCCTCTTACCTCTCTACCTAGGCTCCTAGATGCTAAAGGTATTATTCTAGAGGAGATGAAAGTTAAAAGTGAAAACCTTAAAGAGGAGCCTCAGTCTTCTGAAGAAGAATCTATGTCTTCTGTGGAAACCAGGACACTAATAAAATCTGAGCCTGTAAGTCCAAAGAATGGTGTTTTACCACAGGCTACTGGAGACCAGAAATCTGGTGGAAAATGTGAAACAGACAGACGCATGGTTGCAGCCAGAACAGAACCCCTAACTCCAAACCCAGCTTCTAAGAAACCAAGAGTCCACAAAAGGGGATCAGAATCTAGTTCTGATTCTGACTCAGATTCTGAGAGATCATCTTGTTCTTCCAGATCATCTTCTTCCTCATCATCCTCTTCTTGCTCCCACTCTCGATCAGGCTCTAGTTCTTCTTCATCTTCATCTTGTTCTTCAGCATCTTCTTCATCCTCTTCCTCCACCTCTTCCTCCTCCTCCTCCTCTTCATCTTCATCAGAAGAAAGTGACAGTGATGAAGAAGAAGCCCAAAAACGAGCAGAAAGTACTACTCACATGAAAGCCTATGATGAAGAAAGCGTCGCGTCACTGAGCACTACCCAGGATGAGACTCAGGATAGTTTTCAGATGAACAATGGGACACCAGAGTCTGCTTATATCTTACAAGGTGGATATATGCTGGCAGCCTCGTATTGGCCAAAGGATCGTGTGATGATCAATAGGTTGGACAGTATTTGTCAAACAGTTCTGAAAGGAAAGTGGCCTTCAGCTAGAAGAAGTTATGATGCTAACACAGTGGCTTCTTTCTATACCACAAAACTGCTGGACAGCCCTGGAGCAGCTACAGAATACAGCGATCCCAGTGTACCCACTCCCCCAGGTGCCGGTGTTAAAGAAGAACATGATCAGTCAACACAGATGTCAAAGGTGAAGAAGCATGTACGAGAAAAGGAGTTTACAGTGAAAATCAAAGACGAAGGTGGTTTGAAGTTGACATTTCAGAAGCAAGGGCTTGCTCAGAAAAGACCATTTGATGGTGAAGACGGTGCTCTGGGGCAGCAGCAGTACCTCACTCGGCTTCGAGAGCTTCAAAGTGCATCAGAGACCAGCCTCGTCAATTTCCCAAAATCCATACCAGTATCAGGTACTTCCATTCAACCAACCCTTGGTGCCAATGGTGTGATATTAGACAACCAGCCTATAGTCAAAAAAAGGCGAGGAAGGAGGAAGAATGTAGAAGGTGTTGACATCTTCTTTTTTAACAGAAATAAACCACCTAATCATGTTTCTTTAGGCTTAACCTCCTCACAGATTTCCACAGGGATAAATCCAGCACTATCCTATACTCAACCTCAAGGAATTCCTGATACAGAAAGTCCAGTTCCAGTTATTAATCTTAAAGATGGAACGAGACTTGCAGGAGATGATGCACCAAAGAGAAAGGATTTGGAAAAATGGCTTAAGGAGCACCCGGGTTATGTGGAAGATTTGGGAGCTTTTATTCCTAGAATGCAGCTTCATGAGGGAAGACCCAAACAAAAAAGACACCGTTGCAGAAACCCCAATAAACTAGATGTGAATAGTCTCACTGGAGAAGAACGTGTTCAACTGATTAACAGAAGAAATGCTAGAAAGGTTGGAGGTGCATTTGCTCCCCCTTTGAAAGATTTATGTAGATTCCTAAAAGAAAATTCAGAATATGGAGTAGCTCCTGAATGGGGAGATGTTGTTAAGCAATCTGGATTTCTTCCAGAAAGCATGTATGAACGTATTCTCACTGGTCCCGTTGTGAGAGAGGAAGTAAGCAGGCGGGGGAGACGGCCTAAAAGTGGAATTGCAAAGGCCACAGCAGCAGCAGCTGCTGCATCTGCCACCAGTGTTTCAGGCAATCCTTTGTTAGCCAATGGACTACTTCCAGGTGTGGATCTCACAACTCTTCAGGCCTTACAACAAAACCTACAAAACTTGCAGTCACTGCAAGTAACTGCTGGGTTGATGGGAATGCCTACCGGCCTTCCTTCTGGAGGAGAAGCTAAAAACATGGCTGCTATGTTCCCCATGCTGCTGTCAGGAATGGCTGGATTACCAAATCTGTTGGGCATGGGAGGACTCCTGACAAAGCCTACGGAATCTGGGACAGAAGACAAAAAGGGAAGTGACTCTAAGGAGTCAGAAGGAAAAACAGAAAGGACAGAGAGCCAAAGTTCAGAGAATGGTGGAGAAAACTCTGTGTCAAGTTCTCCTTCCACATCCTCTACTGCTGCATTAAATACAGCTGCAGCTGCCAACCCATTAGCTCTTAACCCACTATTACTATCTAATATACTTTATCCAGGGATGCTTCTCACTCCAGGCCTTAATCTTCATATTCCAACTTTGTCCCAGTCCAATACTTTTGATGTACAAAACAAAAACAGTGACTTAGGCTCGTCTAAGTCTGTAGAAGTAAAAGAAGAAGATTCCAGAATTAAAGATCAGGAAGACAAAGGAGGAACTGAACCAAGTCCTCTCAATGAAAACAGCACAGATGAGGGTTCAGAGAAAGCTGATGCTTCATCTGGATCTGATAGTACATCGTCGTCATCTGAGGATTCAGATTCTAGTAATGAAGACTGA MRGAMELEPELLLQEARENVEAAQSYRRELGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREANSLLHWVRNKKERMSLQMKYLMQNRCHSIH*KIKTLKKEDQIDKLKEKNTQKI*KGSNLKKRLKVL*K*KRIQLLYLVNSLYNCLWRIRVKKMLQL*TKFYLLEP*KRKYHLE**LIQKNFL*NTRITPIFTVSGPQKSSF*KIKGSSRKSNDSN*DKHKEHIFLQTWKKNHLTQTTLK*TEY*KSLFVKIRILVSLLFTT**NGAHCHMKIVLGN*KKM*ILQK*KSLNNCKLQGLTQDVWTVLLLIFGRK*INPGTIKMAINSGNINWKDSTGSCSIGTIDETAS*QMKWVLAKLFNQLHSSMKSF*LV*EDLS*LLLHFLLLQTGRENFVRGLILTLWFIMGA*LADK*YSNTRCTSGIHRGVSFEELTDSKPSSPLLK*FLEAVESLMQLNGDV*LLMKHIG*KIKIVNS*RA*NS*IWNTRCF*LAPLSKIQLKNYLVFFTFLNP*GFLLNQHLCKNLGI*KQRNRYRNFRLS*NQ*C*DD*KKMWKRSWHLKKKPSLK*NLLIFKRNTTGLSWKRTFLFYPKEQDKLMYLTWSIP*WSSGNVVIIHIL*KVLRRKYLENLEILTIQLLLIFIFKQ*SSLLVNWSLLINCFPK*KPEVIKCSSSLKWFVALTFWRTISYIKDTYMSELMAESEEIFGKLL*IDLVNLIQIDLFFSCVPELVGWAST*LQLIHV*FLILIGILRMIFRPKLVATELVRTKQLKSTDW*LVTHMRERCLTEPV*NWA*IKLCYRA*VEEKVMLVVFSSFPKRK*KICFEEVLMVLLWRKKMKALNSAKRISIRFYYVVQKLLQLNQKDVGQHLPRRVLWHLETGQIFL*MIPTSGKNGLKRQK*I*RPSVAETAWLLTLQELGSKQDLLVPQKMNWLNYLKLKVKEMKSPNSGDPVTVPMAMEELNALELRKTC*FMGGADGERFYLMAVSKGS*MNTM*R*FAELS*HIALFTTEEMRRLKVSYGISLLQLKMDRHESYRII*AYQLLYPGVEKGRK*KLKQAHLIYKKQNGFENIIPSSSFKMKATKNI*NTTVIRFCFV*ECCII*SKKLLEMSVRKYLMELMQVTLMFGYQNQTTQKFLLSGGILMLISHSLLEFLNMDMKNITLFEQTQHYASWKEWENLMRKQLLLNRERMIIWMGMWKIQNTNLPQPSLKMI*RMMFPHQEILL*QMEMVN*WRVIKYIGLLNQL*PHV*GVSSLHTSVLIKTDKFSRYNRLSRCLPV*CSLFMRKPLLILKWQPR*KDSKDGQEEKKLTFIGLYLHLEWFLTLTEANLIGQNLELWLGYIRKLMIVWKNICTHSCPCVGGFVVFLPKKNWWIQIFLSSPSQKNVLLGLCIALNF*GKYGNRPFDIHSCLNA*SFAIQIQIYQSGGNVALMIGICLLVLPNTG*AEQTITFFVILNSHLWQLRGTTVKVRWLIQGLLPHFYSNIK*HFLLLLLPLYLGS*MLKVLF*RR*KLKVKTLKRSLSLLKKNLCLLWKPGH**NLSL*VQRMVFYHRLLETRNLVENVKQTDAWLQPEQNP*LQTQLLRNQESTKGDQNLVLILTQILRDHLVLPDHLLPHHPLLAPTLDQALVLLHLHLVLQHLLHPLPPPLPPPPPLHLHQKKVTVMKKKPKNEQKVLLT*KPMMKKASRH*ALPRMRLRIVFR*TMGHQSLLISYKVDICWQPRIGQRIV**SIGWTVFVKQF*KESGLQLEEVMMLTQWLLSIPQNCWTALEQLQNTAIPVYPLPQVPVLKKNMISQHRCQR*RSMYEKRSLQ*KSKTKVV*S*HFRSKGLLRKDHLMVKTVLWGSSSTSLGFESFKVHQRPASSISQNPYQYQVLPFNQPLVPMV*Y*TTSL*SKKGEEGGRM*KVLTSSFLTEINHLIMFL*A*PPHRFPQG*IQHYPILNLKEFLIQKVQFQLLILKMERDLQEMMHQRERIWKNGLRSTRVMWKIWELLFLECSFMREDPNKKDTVAETPIN*M*IVSLEKNVFN*LTEEMLERLEVHLLPL*KIYVDS*KKIQNME*LLNGEMLLSNLDFFQKACMNVFSLVPL*ERK*AGGGDGLKVELQRPQQQQLLHLPPVFQAILC*PMDYFQVWISQLFRPYNKTYKTCSHCK*LLG*WECLPAFLLEEKLKTWLLCSPCCCQEWLDYQICWAWEDS*QSLRNLGQKTKREVTLRSQKEKQKGQRAKVQRMVEKTLCQVLLPHPLLLH*IQLQLPTH*LLTHYYYLIYFIQGCFSLQALIFIFQLCPSPILLMYKTKTVT*ARLSL*K*KKKIPELKIRKTKEELNQVLSMKTAQMRVQRKLMLHLDLIVHRRHLRIQILVMKT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28419 PPME1::ENSG00000291174 ENSG00000214517.10::ENSG00000291174.1 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 316 TRUE 122 PPME1 ENSG00000214517.10 protein_coding + + chr11:74171267-74254703:+ chr11:74222369:+ chr11:73882312-73965748:+ chr11:73933414:+ ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65466085:+ chr11:65222728-65234191:+ chr11:65233556:+ chr11:74225034,chr11:74225036 chr11:65456290,chr11:65456290 NA NA chr11:73936079,chr11:73936081 chr11:65223761,chr11:65223761 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 8 17 4.11 ONLY_REF_SPLICE YES_LDAS 0.2362 GT 1.9899 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28423 ZCCHC7::FAM219A ENSG00000147905.18::ENSG00000164970.15 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 180 FALSE NA FALSE NA ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37126942:+ chr9:37120571-37358146:+ chr9:37126939:+ FAM219A ENSG00000164970.15 protein_coding - - chr9:34398184-34458570:- chr9:34405964:- chr9:34398182-34458568:- chr9:34405962:- chr9:37271426,chr9:37271423,chr9:37271822 chr9:34422572,chr9:34422575,chr9:34422932 NA NA chr9:37271423,chr9:37271420,chr9:37271819 chr9:34422570,chr9:34422573,chr9:34422930 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-CCHC_3|100-108|1^FtrD-like|124-159|0.2^FtrD-like|232-252|0.00041^zf-CCHC_3|237-257|0.00058^zf-CCHC|242-257|5.1e-08^zf-CCHC_2|242-257|4.4e-05^zf-CCHC_3|263-279|0.00091^zf-CCHC|264-279|0.00087^zf-CCHC_2|265-279|0.00066^zf-CCHC_3|304-330|0.0014^zf-CCHC|305-320|1.4^zf-CCHC_2|305-315|0.076^FtrD-like|345-359|0.46^zf-CCHC_3|348-369|6.9e-05^zf-CCHC|350-365|9.8e-06^zf-CCHC_2|353-365|0.15^MCM_WH_arc|377-412|4.2e-05 FAM219A-PARTIAL|~61-185|5.2e-45 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:2.66Mb] 14 5 14 4.86 ONLY_REF_SPLICE YES_LDAS 0.2111 GT 1.9656 AG 1.3383 ENST00000534928.5 1-610 ENST00000651358.1 61-558 chr9|+|[0]37126333-37126942[0]<==>chr9|-|[2]34400964-34401122[0]|[2]34401666-34401720[2]|[1]34402387-34402467[2]|[1]34402705-34402807[1]|[0]34405865-34405964[0] atgatgtttggtggctatgagactatagaagcatacgaagatgatctttatcgagatgagtcatctagtgaactgagtgttgatagtgaggtggaatttcaactctatagccaaattcattatgcccaagatcttgatgatgtcatcagggaggaagagcatgaagaaaagaactctgggaattcggaatcttcgagtagtaaaccaaatcagaagaagctaatcgtcctttcagatagtgaggtcatccagctgtcagatgggtcagaggtcatcactttgtctgatgaagacagtatttatagatgtaaaggaaagaatgttagagttcaagcacaagaaaatgcccatggtctttcttcttctcttcaatctaatgagctggttgataagaaatgcaagagtgatattgagaagcctaaatctgaagagagatcaggtgtaatccgagaggtcatgattatagaggtcagttcaagtgaagaggaagagagcaccatttcagaaggtgataatgtggaaagctggatgctactgggatgtgaagtagatgataaagatgatgatatccttctcaaccttgtgggatgtgaaaactctgttactgaagGACCCAGCCGCCGCCTCCATCTCTGACGGAGACTGTGACGCCCGGGAGGGTGAGTCAGTAGCCATGAATTACAAACCATCCCCGCTCCAAGTGAAGCTGGAGAAGCAGCGGGAGCTGGCCCGGAAGGGCTCCCTGAAGAATGGCAGCATGGGTAGCCCTGTCAACCAGCAACCCAAGAAGAACAATGTCATGGCCCGAACAAGGCTGGTCGTCCCCAATAAAGGCTACTCCTCACTTGACCAGAGCCCTGATGAGAAGCCACTGGTAGCCCTTGACACGGACAGCGATGATGACTTTGACATGTCTAGATACTCCTCCTCCGGCTACTCCTCTGCTGAGCAGATCAACCAAGATTTGAACATCCAGCTGCTGAAGGACGGCTACCGGTTAGATGAGATCCCCGACGACGAGGACCTAGACCTCATCCCCCCCAAGTCCGTGAACCCCACGTGCATGTGCTGCCAGGCCACGTCCTCCACCGCCTGCCACATTCAGTAG MMFGGYETIEAYEDDLYRDESSSELSVDSEVEFQLYSQIHYAQDLDDVIREEEHEEKNSGNSESSSSKPNQKKLIVLSDSEVIQLSDGSEVITLSDEDSIYRCKGKNVRVQAQENAHGLSSSLQSNELVDKKCKSDIEKPKSEERSGVIREVMIIEVSSSEEEESTISEGDNVESWMLLGCEVDDKDDDILLNLVGCENSVTEGPSRRLHL*RRL*RPGG*VSSHELQTIPAPSEAGEAAGAGPEGLPEEWQHG*PCQPATQEEQCHGPNKAGRPQ*RLLLT*PEP**EATGSP*HGQR**L*HV*ILLLRLLLC*ADQPRFEHPAAEGRLPVR*DPRRRGPRPHPPQVREPHVHVLPGHVLHRLPHSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28424 PIGL::PIPOX ENSG00000108474.17::ENSG00000179761.12 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 179 FALSE NA FALSE NA PIGL ENSG00000108474.17 protein_coding + + chr17:16217191-16351797:+ chr17:16326905:+ chr17:16120505-16255111:+ chr17:16230219:+ PIPOX ENSG00000179761.12 protein_coding + + chr17:28950513-29057216:+ chr17:29054545:+ chr17:27277531-27384234:+ chr17:27381563:+ chr17:16328788,chr17:16328832 chr17:29054059,chr17:29054081 NA NA chr17:16232102,chr17:16232146 chr17:27381077,chr17:27381099 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:12.60Mb] 14 8 14 8 ONLY_REF_SPLICE YES_LDAS 0.2462 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1288 chr17:16282014-16282088:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28426 PPME1::ENSG00000291174 ENSG00000214517.10::ENSG00000291174.1 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 316 TRUE 122 PPME1 ENSG00000214517.10 protein_coding + + chr11:74171267-74254703:+ chr11:74222369:+ chr11:73882312-73965748:+ chr11:73933414:+ ENSG00000291174 ENSG00000291174.1 lncRNA + + chr11:65455257-65466720:+ chr11:65456638:+ chr11:65222728-65234191:+ chr11:65224109:+ chr11:74225034,chr11:74225036 chr11:65456290,chr11:65456290 NA NA chr11:73936079,chr11:73936081 chr11:65223761,chr11:65223761 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 11 12 6.62 ONLY_REF_SPLICE YES_LDAS 0.2084 GT 1.9899 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28436 MAP2K6::TNRC6C ENSG00000108984.16::ENSG00000078687.18 EFM19 SRR8615289 SRR8639200 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 181 FALSE NA FALSE NA MAP2K6 ENSG00000108984.16 protein_coding + + chr17:69414697-69553865:+ chr17:69415000:+ chr17:67410838-67550006:+ chr17:67411141:+ TNRC6C ENSG00000078687.18 protein_coding + + chr17:77958703-78108822:+ chr17:78075136:+ chr17:75954785-76104903:+ chr17:76071217:+ chr17:69458975,chr17:69458982 chr17:78073988,chr17:78073985 NA NA chr17:67455116,chr17:67455123 chr17:76070069,chr17:76070066 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:8.46Mb] 3 7 3 7 ONLY_REF_SPLICE YES_LDAS 0.1119 GT 1.9899 AG 1.9656 ENST00000590474.7 1-16 ENST00000636222.1 3539-5835 chr17|+|[0]69414985-69415000[0]<==>chr17|+|[1]78075136-78075278[2]|[0]78077161-78077334[2]|[0]78079395-78079541[2]|[0]78083047-78083166[2]|[0]78086503-78086586[2]|[0]78086853-78087093[0]|[1]78091440-78091607[0]|[1]78092933-78093124[0]|[1]78093620-78093763[0]|[1]78097745-78097861[0]|[1]78098343-78098537[0]|[1]78102474-78102544[2]|[0]78103414-78103553[1]|[2]78104485-78104845[2] atgtctcagtcgaaagGCGCTCTGCTGGAAAAGAAGGTGGACGTGGACAAGCGTGGGCTGGGAGTGACCGACCATAATGGAATGGCCGCCAAGCCCCTCGGCTGCCGCCCGCCAATCTCCAAAGAGTCTTCCGTGGACCGCCCCACCTTTCTTGACAAGCTCACCCTTTCTTTCTCCAATCAGGATGGCGGCCTCGTGGAAGAGCCCACGCCTTCACCGTTCTTGCCTTCCCCAAGCCTGAAGCTCCCCCTTTCACACAGTGCACTCCCCAGTCAGGCCCTGGGTGGGATTGCCTCCGGGCTGGGCATGCAAAACTTGAATTCTTCTAGACAGATACCGAGTGGCAATCTGGGTATGTTTGGCAATAGTGGAGCAGCACAAGCCAGGACCATGCAGCAGCCGCCACAGCCACCAGTGCAGCCTCTTAACTCTTCCCAGCCCAGTCTCCGTGCTCAAGTGCCTCAGTTTCTATCCCCTCAGGTTCAAGCACAGCTTTTGCAGTTTGCAGCAAAAAACATTGGTCTCAACCCTGCACTATTAACCTCGCCAATTAATCCTCAACATATGACGATGTTGAACCAGCTCTATCAGCTGCAGCTGGCATACCAACGTTTACAAATCCAGCAGCAGATGTTACAGGCCCAGCGTAATGTGTCCGGATCCATGAGACAACAGGAGCAGCAAGTTGCGCGCACAATCACTAATCTGCAGCAGCAGATCCAGCAGCACCAGCGCCAGCTGGCCCAGGCCCTGCTCGTGAAGCAGCCACCACCGCCACCGCCCCCGCCGCACCTGTCTCTGCACCCCTCTGCAGGCAAATCGGCCATGGACAGCTTCCCCTCGCACCCACAGACTCCCGGCCTACCTGACCTGCAGACCAAAGAGCAGCAGTCTTCACCCAACACCTTTGCTCCTTACCCTCTCGCTGGACTGAACCCAAACATGAATGTCAACAGCATGGACATGACCGGTGGCTTGTCGGTGAAGGACCCATCCCAGTCCCAGTCACGCCTCCCCCAGTGGACGCACCCCAACTCCATGGATAACTTGCCCAGTGCCGCTTCCCCCCTGGAGCAGAACCCTAGCAAGCATGGTGCTATCCCTGGAGGTCTAAGCATTGGGCCTCCAGGTAAGTCCTCCATTGATGACTCCTATGGCCGGTACGATTTAATCCAGAACAGTGAGTCACCAGCCAGTCCTCCCGTAGCTGTTCCCCATAGCTGGTCACGTGCCAAATCTGACAGTGATAAAATCTCAAATGGCTCTAGCATCAACTGGCCCCCAGAATTCCATCCGGGAGTTCCATGGAAAGGACTGCAGAATATTGACCCTGAGAATGACCCTGACGTCACTCCTGGCAGTGTCCCCACTGGGCCTACCATCAACACCACCATCCAGGATGTCAACCGCTACCTCCTCAAGAGTGGAGGGTCCTCCCCGCCATCATCTCAGAATGCCACGCTGCCTTCTTCGAGTGCCTGGCCACTCAGTGCCTCCGGCTACAGTAGCTCTTTCAGCAGCATTGCATCCGCACCTAGTGTTGCAGGTAAACTGTCAGACATCAAATCGACGTGGTCCTCTGGCCCTACCTCCCACACGCAAGCCTCTCTGTCTCATGAACTATGGAAGGTGCCCAGAAACAGTACTGCACCCACGAGGCCACCTCCAGGGTTAACCAATCCCAAGCCCTCCTCCACCTGGGGTGCCAGCCCCCTCGGCTGGACCAGCTCCTACTCCTCGGGTTCTGCCTGGAGCACCGACACCTCAGGAAGAACCAGCAGCTGGCTCGTTCTTCGAAACCTCACTCCCCAGATTGATGGTTCTACACTGCGGACATTGTGTTTGCAACATGGGCCTCTTATCACATTCCACCTGAATCTGACTCAAGGCAATGCTGTGGTCCGGTACAGCTCCAAGGAGGAGGCTGCCAAGGCCCAGAAGTCTCTGCACATGTGCGTCCTGGGAAACACTACCATCCTGGCCGAGTTCGCTGGTGAAGAAGAAGTGAATCGCTTCTTAGCCCAAGGCCAGGCGCTGCCACCCACTTCCAGCTGGCAGTCCAGCAGCGCGTCCAGCCAGCCGCGGCTCAGCGCAGCGGGCAGCTCCCATGGCCTGGTACGCAGCGACGCTGGCCACTGGAACGCCCCGTGCCTGGGTGGCAAGGGGAGCAGTGAGCTGCTGTGGGGCGGGGTGCCCCAGTACTCCAGCAGCCTGTGGGGCCCGCCCAGCGCCGACGACAGCAGGGTGATAGGCAGCCCCACGCCGCTAACCACCCTGCTGCCTGGGGACCTGCTCAGCGGGGAGTCCCTGTAG MSQSKGALLEKKVDVDKRGLGVTDHNGMAAKPLGCRPPISKESSVDRPTFLDKLTLSFSNQDGGLVEEPTPSPFLPSPSLKLPLSHSALPSQALGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPPQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGSMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSAGKSAMDSFPSHPQTPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSMDMTGGLSVKDPSQSQSRLPQWTHPNSMDNLPSAASPLEQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPPSSQNATLPSSSAWPLSASGYSSSFSSIASAPSVAGKLSDIKSTWSSGPTSHTQASLSHELWKVPRNSTAPTRPPPGLTNPKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSASSQPRLSAAGSSHGLVRSDAGHWNAPCLGGKGSSELLWGGVPQYSSSLWGPPSADDSRVIGSPTPLTTLLPGDLLSGESL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Dual specificity mitogen-activated protein kinase kinase 6 STE STE7 P52564 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28437 SRSF7::DHX57 ENSG00000115875.19::ENSG00000163214.21 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38746694:- chr2:38970741-38978636:- chr2:38973836:- DHX57 ENSG00000163214.21 protein_coding - - chr2:38797729-38875934:- chr2:38868411:- chr2:39024871-39103075:- chr2:39095553:- chr2:38746351,chr2:38746353,chr2:38746353 chr2:38875344,chr2:38875333,chr2:38875343 NA NA chr2:38973493,chr2:38973495,chr2:38973495 chr2:39102486,chr2:39102475,chr2:39102485 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.05Mb];LOCAL_REARRANGEMENT:-:[46235] 197 51 197 51 ONLY_REF_SPLICE YES_LDAS 2.2125 GT 1.5301 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28438 ZNF787::PARP6 ENSG00000142409.6::ENSG00000137817.17 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF787 ENSG00000142409.6 protein_coding - - chr19:56087366-56121295:- chr19:56103139:- chr19:56598732-56632664:- chr19:56614508:- PARP6 ENSG00000137817.17 protein_coding - - chr15:72241181-72272999:- chr15:72267671:- chr15:72533522-72565340:- chr15:72560012:- chr19:56101933,chr19:56101933 chr15:72268686,chr15:72268710 NA NA chr19:56613302,chr19:56613302 chr15:72561027,chr15:72561051 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr15] 137 82 137 82 ONLY_REF_SPLICE YES_LDAS 1.9539 GT 1.8256 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28439 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 185 TRUE 332 TRUE 130 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79809795:- chr12:80167343-80329240:- chr12:80203575:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79808919,chr12:79808923 chr12:79669629,chr12:79669618 NA NA chr12:80202699,chr12:80202703 chr12:80063409,chr12:80063398 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|44-88|1.9e-09^Ank_3|44-67|0.0029^Ank|46-70|0.00024^Ank_2|46-134|4.3e-24^Ank_5|47-78|6.6e-05^Ank_5|59-111|5.8e-13^Ank|72-104|1.1e-11^Ank_3|72-100|4e-10^Ank_4|74-126|5.7e-18^Ank|106-136|1.6e-09^Ank_5|109-146|1.4e-10^Ank_3|109-132|4.6e-05^Ank_4|119-146|7.7e-05^Ank_2|135-158|0.13^Ank|139-157|0.056^Ank_3|139-166|2.8^Ank_2|188-259|6.5e-18^Ank_5|197-237|1.6e-10^Ank|199-229|1.5e-10^Ank_3|199-227|5.9e-07^Ank_4|200-251|1.6e-16^Ank|231-263|6e-09^Ank_5|231-272|0.00068^Ank_3|231-256|1.2e-05^Ank_4|234-272|6.2e-07^PRKG1_interact|281-347|6^PRKG1_interact|331-361|6^PRKG1_interact|474-522|0.65^PRKG1_interact|698-751|6^PRKG1_interact|862-862|6^PRKG1_interact|931-1030|9.1e-40 none ["PAWR:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[82466] 83 34 83 18.21 ONLY_REF_SPLICE YES_LDAS 0.903 GT 1.2419 AG 1.9329 ENST00000261207.9 1-1455 ENST00000328827.9 517-1023 chr12|-|[2]79809795-79810010[0]|[2]79817394-79817518[1]|[0]79820774-79820931[2]|[1]79821078-79821166[0]|[2]79822116-79822190[0]|[2]79828320-79828464[2]|[1]79832332-79832491[1]|[0]79845302-79845420[2]|[1]79872808-79872938[0]|[2]79934695-79934931[0]<==>chr12|-|[2]79592607-79592693[0]|[2]79594329-79594433[0]|[2]79596511-79596658[2]|[1]79613575-79613609[0]|[2]79621076-79621207[0] atgaagatggcggacgcgaagcagaagcggaacgagcagctgaaacgctggatcggctccgagacggacctcgagcctccggtggtgaagcgccagaagaccaaggtgaagttcgacgatggcgccgtcttcctggctgcttgctccagcggcgacacggacgaggtcctcaagctgctgcaccgcggcgccgacatcaattacgccaatgtggacggactcactgccctgcaccaggcttgcattgatgacaatgttgatatggtgaagtttctggtagaaaatggagcaaatattaatcaacctgataatgaaggctggataccactacatgcagcagcttcctgtggatatcttgatattgcagagtttttgattggtcaaggagcacatgtaggggctgtcaacagtgaaggagatacacctttagatattgcggaggaggaggcaatggaagagctacttcaaaatgaagttaatcggcaaggggttgatatagaagcagctcgaaaggaagaagaacggatcatgcttagagatgccaggcagtggctaaatagtggtcatataaatgatgtccggcatgcaaaatctggaggtacagcacttcacgttgcagctgctaaaggctatacggaagttttaaaacttttaatacaggcaggctatgatgttaatattaaagactatgatggctggacacctcttcatgctgcagctcattggggtaaagaagaagcatgtcgaattttagtggacaatctgtgtgatatggagatggtcaacaaagtgggccaaacagcctttgatgtagcagatgaagacattttaggatatttagaagagttgcaaaagaaacaaaatctgctccatagtgaaaaacgggacaagaaatctccactaattgaatcaacagcaaatatggacaataatcagtcacagaagacctttaaaaacaaagagacgttgattattgaaccagagaaaaatgcatcccgtattgaatctctggaacaagaaaaggttgatgaagaagaagaaggaaagaaggatgagtctagctgctctagtgaagaagatgaggaagatgactcggaatcagaagctgaaacagataagacaaaacccctggcttctgtaactaatgccaacacttctagtacacaagcagctcctgtagctgttacaacacctactgtgtcatcaggtcaagcaacacctacatcacctattaaaaagtttccaaccacagctacaaaaatttctcccaaagaagaagagagaaaagatgagtctcctgcaacttggaggttaggacttagaaagacgggcagctatggtgcacttgctgaaatcacagcatctaaagagggtcagaaagaaaaagatactgcaggtgttacacgttcagcttcaagtcccagactttcctcctctttggataataaagaaaagTGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATTCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAGGAGCCACCTAGAACAGTTTCAGGCAGATATAAAAGCACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATAGAAGTGGGTTCCCTAGATATAACAGGGATGCAAATGTTTCAGGTACTCTGGTTTCAAGTAGCACACTGGAAAAGAAAATTGAAGATCTTGAAAAGGAAGTAGTAAGAGAAAGACAAGAAAACCTAAGACTTGTGAGACTGATGCAAGATAAAGAGGAAATGATTGGAAAACTCAAAGAAGAAATTGATTTATTAAATAGAGACCTAGATGACATAGAAGATGAAAATGAACAGCTAAAGCAGGAAAATAAAACTCTTTTGAAAGTTGTGGGTCAGCTGACCAGGTAG MKMADAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAGYDVNIKDYDGWTPLHAAAHWGKEEACRILVDNLCDMEMVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRDKKSPLIESTANMDNNQSQKTFKNKETLIIEPEKNASRIESLEQEKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSGQATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKDTAGVTRSASSPRLSSSLDNKEKCLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28441 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 332 TRUE 130 PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79809795:- chr12:80167343-80329240:- chr12:80203575:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79668408:- chr12:79968759-80084744:- chr12:80062188:- chr12:79808919,chr12:79808923 chr12:79669629,chr12:79669618 NA NA chr12:80202699,chr12:80202703 chr12:80063409,chr12:80063398 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PAWR:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[82466] 50 56 50 37.79 ONLY_REF_SPLICE YES_LDAS 0.7832 GT 1.2419 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28443 SLC4A7::NEK10 ENSG00000033867.17::ENSG00000163491.18 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 187 FALSE NA FALSE NA SLC4A7 ENSG00000033867.17 protein_coding - - chr3:27372721-27484420:- chr3:27418486:- chr3:27414212-27525911:- chr3:27459977:- NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27119868:- chr3:27147975-27410951:- chr3:27161359:- chr3:27416047,chr3:27416049 chr3:27129712,chr3:27129711 NA NA chr3:27457538,chr3:27457540 chr3:27171203,chr3:27171202 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Band_3_cyto|74-85|2.1^Band_3_cyto|150-271|5.8e-42^Band_3_cyto|395-540|6.3e-68^MFS_MOT1|437-469|2.5^HCO3_cotransp|589-1097|2.5e-234^EMC6|808-872|0.0038^EMC6|966-1028|0.002^MFS_MOT1|966-979|1.7^MFS_MOT1|1023-1056|0.00019^EMC6|1046-1107|1.1 none ["ChimerPub","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS[3261] 43 12 43 12 ONLY_REF_SPLICE YES_LDAS 0.4907 GT 1.9086 AG 1.9219 ENST00000454389.6 1-1659 ENST00000383771.8 1159-1425 chr3|-|[2]27418486-27418632[0]|[2]27420700-27420787[2]|[1]27421622-27421779[0]|[2]27424037-27424152[1]|[0]27431298-27431669[1]|[0]27433916-27434104[1]|[0]27436388-27436548[2]|[1]27437388-27437526[1]|[0]27448651-27448797[1]|[0]27452417-27452498[0]|[2]27484067-27484126[0]<==>chr3|-|[2]27111272-27111320[2]|[1]27115940-27115995[0]|[2]27116075-27116127[1]|[0]27119760-27119868[0] atggaggctgatggggccggcgagcagatgagaccgctactcacccgggtaacgagcaggggtcctgatgaagaagctgttgtggatcttggcaaaactagctcaactgtgaacaccaagtttgaaaaagaagaactagaaagtcatagagctgtatatattggtgttcacgtcccgtttagtaaagagagtcgtcggcgtcataggcatcgcggacacaaacatcaccaccggagaagaaaagataaagaatcagataaagaagatggacgggaatctccttcttatgatacaccatcccagagagttcagtttatccttggtactgaagatgatgatgaagaacatattccccatgatctcttcacggaaatggatgaactgtgttacagagatggagaagaatatgaatggaaagaaactgctagatggctgaaatttgaagaggatgttgaagatggcggtgaccgatggagtaaaccttatgtggcaactctctctttgcacagtctttttgaactaaggagttgcatcctcaatggaacagtcatgctggatatgagagcaagcactctagatgaaatagcagatatggtattagacaacatgatagcttctggccaattagacgagtccatacgagagaatgtcagagaagctcttctgaagagacatcatcatcagaatgagaaaagattcaccagtcggattcctcttgttcgatcttttgcagatataggcaagaaacattctgaccctcacttgcttgaaaggaatggggaaggcctttcagcctcccgccactctttgcgaacaggtctgtctgcctcaaacctttccttgagaggagaatcacctttatctcttcttcttggtcatcttcttccttcttcaagagctggaacccctgcaggctcaaggtgtacaaccccagtacccacccctcaaaacagtcctccttctagccctagcatcagccgcctgacctccagaagttcccaagagagtcagcgtcaggccccagaactactggtttcacctgccagtgatgatattcccacagtagtaattcatccgcctgaggaagacttagaagcagcgctgaaaggcgaggagcagaagaatgaggaaaatgttgacttaactccaggtattttggcctctccccagtctgctcctggaaacttggacaatagtaaaagtggagaaattaaaggtaatggaagtggtggaagcagagaaaatagtactgttgacttcagcaaggttgatatgaatttcatgagaaaaattcctacgggtgctgaggcatccaacgtcctggtgggcgaagtagactttttggaaaggccaataattgcatttgtgagactggctcctgctgtcctccttacagggttgactgaggtccctgttccaaccaggtttttgtttttgttattgggtccagcgggcaaggcaccacagtaccatgaaattggacgatcaatagccactctcatgacagatgagattttccatgatgtagcttataaagcaaaagacagaaatgacctcttatctggaattgatgaatttttagatcaagtaactgtcctacctccaggagagtgggatccttctatacgcatagaaccaccaaaaagtgtcccttctcagTTATCTCAGGGATCTCCAGAACCGATTGAGCCCAACTTTTTCACAGCAGATTACCATTTATTACATCGTTCATCCGGTGGAAACAGCCTGTCCCCAAATGACCCTACAGGTTTACCAACCAGCATTGAATTGGAGGAAGGAATAACATATGAACAGATGCAGACTGTGATTGAAGAAGTCCTTGAGGAAAGTGGCTATTACAATTTTACATCTAACAGGTATCATTCCTATCCATGGGGGACCAAGAATCACCCAACCAAAAGATGA MEADGAGEQMRPLLTRVTSRGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYIGVHVPFSKESRRRHRHRGHKHHHRRRKDKESDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKETARWLKFEEDVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLDESIRENVREALLKRHHHQNEKRFTSRIPLVRSFADIGKKHSDPHLLERNGEGLSASRHSLRTGLSASNLSLRGESPLSLLLGHLLPSSRAGTPAGSRCTTPVPTPQNSPPSSPSISRLTSRSSQESQRQAPELLVSPASDDIPTVVIHPPEEDLEAALKGEEQKNEENVDLTPGILASPQSAPGNLDNSKSGEIKGNGSGGSRENSTVDFSKVDMNFMRKIPTGAEASNVLVGEVDFLERPIIAFVRLAPAVLLTGLTEVPVPTRFLFLLLGPAGKAPQYHEIGRSIATLMTDEIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQLSQGSPEPIEPNFFTADYHLLHRSSGGNSLSPNDPTGLPTSIELEEGITYEQMQTVIEEVLEESGYYNFTSNRYHSYPWGTKNHPTKR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28446 RALA::CDK13 ENSG00000006451.8::ENSG00000065883.18 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 186 FALSE NA FALSE NA RALA ENSG00000006451.8 protein_coding + + chr7:39623565-39708120:+ chr7:39623825:+ chr7:39663164-39747719:+ chr7:39663424:+ CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:39997494:+ chr7:39989720-40139179:+ chr7:40037093:+ chr7:39660786,chr7:39660785 chr7:39988668,chr7:39988664 NA NA chr7:39700385,chr7:39700384 chr7:40028267,chr7:40028263 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RALA:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.24Mb] 37 26 37 26 ONLY_REF_SPLICE YES_LDAS 0.5621 GT 1.7465 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28448 PRSS23::TMEM135 ENSG00000150687.12::ENSG00000166575.17 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 188 FALSE NA FALSE NA PRSS23 ENSG00000150687.12 protein_coding + + chr11:86791059-86952910:+ chr11:86823593:+ chr11:86502101-86663952:+ chr11:86534635:+ TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87236638:+ chr11:86748886-87039866:+ chr11:86947680:+ chr11:86835546,chr11:86835547 chr11:87204651,chr11:87204649 NA NA chr11:86546588,chr11:86546589 chr11:86915693,chr11:86915691 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.08Mb];NEIGHBORS[84934] 21 11 21 11 ONLY_REF_SPLICE YES_LDAS 0.2855 GT 1.5628 AG 1.371 ENST00000533902.2 1-206 ENST00000305494.6 463-1377 chr11|+|[0]86823388-86823593[1]<==>chr11|+|[0]87236638-87236684[1]|[2]87295782-87295823[1]|[2]87302296-87302442[1]|[2]87305936-87306005[2]|[0]87309505-87309672[2]|[0]87313425-87313488[0]|[1]87314471-87314547[2]|[0]87318137-87318235[2]|[0]87319310-87319377[1]|[2]87321201-87321333[2] atgagtagaatgagacctgtgtgccaaccctggcctagtcctcatgcccccacaactgtgaagcgagagggctcaacagtttcgaattcaattcaaccaccacctcctgaataccaactaggttccaggacctggctagaagcagagacaccaggacagaaaagacagtgttctgctttcatggagttcacagaagagtcgaggagGTCCTTTTGTTTTGCATCACAGCTGCCATGTACATGTTCTTTTTCAGGTGCAAGGATGGCTTGAAAGGATTTACATTTTCTGCACTTAGGTTCATTGTAGGGAAGGAAGAAATTCCCACACATTCTTTTTCACCAGAGGCAGCATATGCAAAAGTGGAACAAAAGAGAGAGCAACATGAGGAAAAACCCGGAAGAATGAATATGATTGGTCTAGTCAGGAAATTTGTGGATTCAATATGCAAACATGGACCAAGGCATAGATGTTGCAAACATTATGAAGATAATTGCATCTCTTATTGCATTAAAGGTTTCATCAGAATGTTTAGCGTGGGGTACTTGATCCAGTGCTGCCTCCGAATCCCTTCTGCATTTAGGCATCTGTTTACACAGCCATCTCGGCTACTTTCTCTCTTCTACAATAAAGAAAACTTCCAGCTTGGAGCTTTTCTTGGCTCTTTTGTTAGTATATACAAGGGTACTAGTTGCTTCCTGCGCTGGATCAGAAACTTAGATGATGAACTACATGCTATTATAGCTGGATTTTTGGCAGGTATATCAATGATGTTTTATAAAAGCACAACAATTTCCATGTATTTAGCGTCCAAATTGGTAGAGACAATGTATTTCAAAGGCATTGAAGCAGGGAAGGTTCCCTATTTTCCTCATGCAGATACTATCATCTATTCCATCTCTACAGCAATTTGCTTCCAGGCAGCTGTCATGGAAGTTCAGACTTTGAGACCATCTTACTGGAAGTTCCTTTTAAGACTCACCAAGGGCAAATTTGCTGTCATGAACCGAAAAGTCCTTGATGTTTTTGGTACTGGTGCATCTAAACACTTTCAGGATTTCATCCCCAGGTTGGATCCAAGATACACAACTGTAACACCAGAGTTGCCCACAGAGTTTTCCTGA MSRMRPVCQPWPSPHAPTTVKREGSTVSNSIQPPPPEYQLGSRTWLEAETPGQKRQCSAFMEFTEESRRSFCFASQLPCTCSFSGARMA*KDLHFLHLGSL*GRKKFPHILFHQRQHMQKWNKRESNMRKNPEE*I*LV*SGNLWIQYANMDQGIDVANIMKIIASLIALKVSSECLAWGT*SSAASESLLHLGICLHSHLGYFLSSTIKKTSSLELFLALLLVYTRVLVASCAGSET*MMNYMLL*LDFWQVYQ*CFIKAQQFPCI*RPNW*RQCISKALKQGRFPIFLMQILSSIPSLQQFASRQLSWKFRL*DHLTGSSF*DSPRANLLS*TEKSLMFLVLVHLNTFRISSPGWIQDTQL*HQSCPQSFP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28454 ENSG00000232234::HULC ENSG00000232234.4::ENSG00000285219.4 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 4731 FALSE NA ENSG00000232234 ENSG00000232234.4 lncRNA + + chr6:8102711-8343139:+ chr6:8307560:+ chr6:8102944-8343372:+ chr6:8307793:+ HULC ENSG00000285219.4 lncRNA + + chr6:8435568-9294133:+ chr6:8784191:+ chr6:8435801-9294366:+ chr6:8784424:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 5 14 1.4 ONLY_REF_SPLICE YES_LDAS 0.1374 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28456 AMN1::ENSG00000283907 ENSG00000151743.11::ENSG00000283907.2 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AMN1 ENSG00000151743.11 protein_coding - - chr12:31671142-31729121:- chr12:31697361:- chr12:31824076-31882055:- chr12:31850295:- ENSG00000283907 ENSG00000283907.2 lncRNA + + chr19:35557928-35581960:+ chr19:35581852:+ chr19:36048830-36072862:+ chr19:36072754:+ chr12:31693517,chr12:31693522,chr12:31693524 chr19:35580670,chr19:35580665,chr19:35580662 NA NA chr12:31846451,chr12:31846456,chr12:31846458 chr19:36071572,chr19:36071567,chr19:36071564 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 0 12 0 ONLY_REF_SPLICE YES_LDAS 0.1071 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28461 DLG1::SH3D19 ENSG00000075711.21::ENSG00000109686.20 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197075837:- chr3:196769431-197026201:- chr3:196802708:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151122207:- chr4:152023903-152246757:- chr4:152043359:- chr3:197074476 chr4:151126757 NA NA chr3:196801347 chr4:152047909 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame L27_1|6-63|3.5e-32^MAGUK_N_PEST|107-223|1.8e-46^PDZ|224-307|7.9e-24^PDZ_2|250-311|4.4e-08^DUF6288|253-299|0.026^PDZ_6|255-309|5.7e-10^PDZ|320-402|2e-23^PDZ_2|338-402|7.4e-06^DUF6288|347-382|0.036^PDZ_6|350-403|5.7e-09^PDZ_assoc|404-465|9.9e-31^PDZ|467-543|1.3e-23^PDZ_2|476-541|5.9e-06^DUF6288|491-535|0.00082^PDZ_6|496-542|2.8e-10^SH3_1|506-517|4.3^SH3_2|585-644|1.2e-09^SH3_1|587-643|1.5e-10^SH3_9|588-627|9.5e-05^PDZ_2|599-616|6.3^Guanylate_kin|714-890|2e-70^DUF1638|800-868|0.0002 none ["DLG1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr4] 10 3 10 1.58 ONLY_REF_SPLICE YES_LDAS 0.1033 GT 1.8892 AG 1.8062 ENST00000419354.5 1-2038 ENST00000409598.8 2188-2304 chr3|-|[0]197075837-197075870[0]|[2]197081051-197081117[2]|[1]197085580-197085756[2]|[1]197090912-197091026[1]|[0]197104903-197105005[0]|[2]197115927-197116083[2]|[1]197119410-197119530[1]|[0]197130527-197130671[0]|[2]197136542-197136678[1]|[0]197138222-197138391[2]|[1]197140140-197140264[0]|[2]197142718-197142768[0]|[2]197149743-197149796[0]|[2]197161640-197161738[0]|[2]197194425-197194589[0]|[2]197282679-197282845[1]|[0]197296346-197296477[1]|[0]197297186-197297204[0]<==>chr4|-|[2]151122091-151122207[0] atgccggtccggaagcaagatacccagagagcattgcaccttttggaggaatatcgttcaaaactaagccaaactgaagacagacagctcagaagttccatagaacgggttattaacatatttcagagcaacctctttcaggctttaatagatattcaagaattttatgaagtgaccttactggataatccaaaatgtatagatcgttcaaagccgtctgaaccaattcaacctgtgaatacttgggagatttccagccttccaagctctactgtgacttcagagacactgccaagcagccttagccctagtgtagagaaatacaggtatcaggatgaagatacacctcctcaagagcatatttccccacaaatcacaaatgaagtgataggtccagaattggttcatgtctcagagaagaacttatcagagattgagaatgtccatggatttgtttctcattctcatatttcaccaataaagccaacagaagctgttcttccctctcctcccactgtccctgtgatccctgtcctgccagtccctgctgagaatactgtcatcctacccaccataccacaggcaaatcctcccccagtactggtcaacacagatagcttggaaacaccaacttacgttaatggcacagatgcagattatgaatatgaagaaatcacacttgaaaggggaaattcagggcttggtttcagcattgcaggaggtacggacaacccacacattggagatgactcaagtattttcattaccaaaattatcacagggggagcagccgcccaagatggaagattgcgggtcaatgactgtatattacgagtaaatgaagtagatgttcgtgatgtaacacatagcaaagcagttgaagcgttgaaagaagcagggtctattgtacgcttgtatgtaaaaagaaggaaaccagtgtcagaaaaaataatggaaataaagctcattaaaggtcctaaaggtcttgggtttagcattgctggaggtgttggaaatcagcatattcctggggataatagcatctatgtaaccaaaataattgaaggaggtgcagcacataaggatggcaaacttcagattggagataaacttttagcagtgaataacgtatgtttagaagaagttactcatgaagaagcagtaactgccttaaagaacacatctgattttgtttatttgaaagtggcaaaacccacaagtatgtatatgaatgatggctatgcaccacctgatatcaccaactcttcttctcagcctgttgataaccatgttagcccatcttccttcttgggccagacaccagcatctccagccagatactccccagtttctaaagcagtacttggagatgatgaaattacaagggaacctagaaaagttgttcttcatcgtggctcaacgggccttggtttcaacattgtaggaggagaagatggagaaggaatatttatttcctttatcttagccggaggacctgctgatctaagtggagagctcagaaaaggagatcgtattatatcggtaaacagtgttgacctcagagctgctagtcatgagcaggcagcagctgcattgaaaaatgctggccaggctgtcacaattgttgcacaatatcgacctgaagaatacagtcgttttgaagctaaaatacatgatttacgggagcagatgatgaatagtagtattagttcagggtcaggttctcttcgaactagccagaagcgatccctctatgtcagagccctttttgattatgacaagactaaagacagtgggcttcccagtcagggactgaacttcaaatttggagatatcctccatgttattaatgcttctgatgatgaatggtggcaagccaggcaggttacaccagatggtgagagcgatgaggtcggagtgattcccagtaaacgcagagttgagaagaaagaacgagcccgattaaaaacagtgaaattcaattctaaaacgagagataaaggggagatccctgacgacatgggatcaaaaggcctgaGCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAG MPVRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEVTLLDNPKCIDRSKPSEPIQPVNTWEISSLPSSTVTSETLPSSLSPSVEKYRYQDEDTPPQEHISPQITNEVIGPELVHVSEKNLSEIENVHGFVSHSHISPIKPTEAVLPSPPTVPVIPVLPVPAENTVILPTIPQANPPPVLVNTDSLETPTYVNGTDADYEYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYMNDGYAPPDITNSSSQPVDNHVSPSSFLGQTPASPARYSPVSKAVLGDDEITREPRKVVLHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYSRFEAKIHDLREQMMNSSISSGSGSLRTSQKRSLYVRALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPSKRRVEKKERARLKTVKFNSKTRDKGEIPDDMGSKGLSWRYNNRAGICR**LDEWRTYGKIWNISQKLHTVSTDQL FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28463 CDK13::SUGCT ENSG00000065883.18::ENSG00000175600.16 EFO21 SRR8615290 SRR8639153 OVARY carcinoma (serous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 191 FALSE NA FALSE NA CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:40047877:+ chr7:39989720-40139179:+ chr7:40087476:+ SUGCT ENSG00000175600.16 protein_coding + + chr7:40135005-40860763:+ chr7:40274513:+ chr7:40174604-40900362:+ chr7:40314112:+ chr7:40054136,chr7:40054137 chr7:40261315,chr7:40261313 NA NA chr7:40093735,chr7:40093736 chr7:40300914,chr7:40300912 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame THRAP3_BCLAF1|197-386|8^Pkinase_fungal|238-279|8^THRAP3_BCLAF1|393-576|5.3e-07^Pkinase|707-998|1.1e-74^PK_Tyr_Ser-Thr|710-957|3.5e-38^Pkinase_fungal|710-775|0.33^Haspin_kinase|712-870|1.3e-09^ABC1|714-737|0.0059^Kdo|748-859|2.7e-05^Kinase-like|761-901|8.1e-06^ABC1|826-876|1.8e-07^Pkinase_fungal|829-878|5e-05^PK_Tyr_Ser-Thr|1089-1123|2.3 none ["TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.04Mb];NEIGHBORS[37843] 8 8 8 8 ONLY_REF_SPLICE YES_LDAS 0.1428 GT 1.7968 AG 1.9329 ENST00000181839.10 1-2600 ENST00000628514.3 577-1395 chr7|+|[0]39950642-39951852[1]|[2]39987599-39988258[1]|[2]39997494-39997664[1]|[2]39999361-39999500[0]|[1]40001861-40002031[0]|[1]40045836-40046025[1]|[2]40047821-40047877[1]<==>chr7|+|[0]40274513-40274656[2]|[0]40316760-40316855[2]|[0]40449287-40449358[2]|[0]40459101-40459198[1]|[2]40496284-40496386[2]|[0]40684056-40684133[2]|[0]40749434-40749497[0]|[1]40860316-40860479[2] atgccgagcagctcggacacggcgctggggggaggcgggggcctgagctgggcggagaagaagttggaggaacgccgcaagcggaggcgattcctgtcccctcagcagccgccgctgctgttgccgctcctgcagccgcagctcctgcaaccgccgccgcccccgccgcctctgctcttcctggctgctcccggcacggccgccgccgcagccgccgccgccgcggcctcctcctcttgcttcagcccgggcccccctctggaggtcaagcggctggcgagaggcaagaggcgcgcaggagggcggcagaagcggcgtcgcgggccccgcgccgggcaggaggcggagaagcgtcgggtcttctcgctgccccagccgcagcaggacggcggtggcggtgctagtagcggcgggggtgtgaccccgctggtggaatacgaggatgtgagctcccagtccgagcaggggctgctgctggggggggccagcgcggcaacggcggcgacggctgccgggggaacggggggcagcggcgggagtccggcctcctcctccggcacccagcggcgcggggaggggtcggagcgcaggccccgccgggaccgccgcagcagcagtggccgcagcaaggagcgccaccgcgagcaccggcggcgggatgggcagcgcggtggcagcgaggcctccaagtcccgcagccgccacagccacagcggcgaggaacgggccgaggtcgccaagagcggcagcagcagcagcagcggcggccgccggaaaagcgcttcggccacatccagcagcagtagcagccgcaaggaccgggactcgaaggcccaccgcagccggactaagtcgtccaaggagccgccttcggcctacaaggaaccgcccaaggcctaccgggaggacaagaccgagcctaaggcctacaggcggcggcggtccctcagcccactgggaggccgggacgacagcccggtgtcccacagggcctctcagagcctgaggagccgcaagtcccccagcccggcaggaggtggcagcagcccctattctcggcggctgccgcgctccccgagcccctacagtcgccgccgctcccccagctacagccgccacagctcctacgagcggggcggcgacgtgtcccctagtccctacagcagcagcagctggcgccgctctcgcagtccctacagccctgtgctcagacggtctggaaaatcccgaagcagaagcccgtattcatctaggcattcaagatctcgtagcaggcacagattgtctagatccagaagtcgtcattctagtatttctcctagcacactaactctgaagagtagcctggcagctgaattgaacaagaataaaaaagcacgagcagcagaggcagcaagagccgcagaagcagcgaaagctgcagaagcaactaaggctgctgaggctgctgccaaggctgcaaaagcttcaaacacttctacacctaccaaggggaacacggaaactagtgccagtgcatcacaaacaaaccatgtgaaggatgtgaagaaaattaaaattgaacatgcaccttctccctcaagtggtggaactttaaaaaatgacaaagcaaaaacaaagccacctcttcaggtaacgaaggtggaaaataatttgattgtagataaagccaccaagaaagcagtcatagttggaaaggagagtaaatctgctgctacaaaggaggaatcagtatctcttaaagagaaaaccaaaccacttacaccaagcataggagccaaggagaaggagcaacatgtagctttagtcacctctacattaccaccgttacctttgcctcccatgctgcctgaagataaagaagctgatagcttacgaggaaatatttcagtaaaagcagttaaaaaagaagtagaaaagaaactccgatgtcttcttgctgatttaccgctgccccctgagctaccaggaggagatgatctttcaaagagtccagaggaaaagaaaacagcaacacagttacatagtaaaaggaggcctaaaatatgtgggcctcgctatggtgaaaccaaagaaaaagatattgactggggaaaacgctgcgtggataaatttgatatcatcggaattattggagaaggtacttacggacaagtttacaaagccagggataaagacactggagaaatggtagccttaaaaaaagtacgtctggataatgaaaaggaaggctttccaattacagcaattcgagaaattaaaattctccggcagcttacccatcagagtattatcaatatgaaggaaatagtgactgataaagaagatgctttggatttcaagaaggacaaaggtgcattttatctggtgtttgaatatatggaccatgatctgatgggactactggaatcaggcttggttcattttaatgaaaatcacataaagtcatttatgagacagctcatggagggtctggattattgtcataagaagaactttttgcatagagatattaaatgttccaatatccttctaaataatagagggcagataaaacttgcagactttggacttgctcgattgtatagctcagaagaaagAATGGAGATCCAGTTCGCCCAGGAGTAGCTATGACTGATCTTGCCACTGGCCTGTATGCATATGGAGCTATTATGGCTGGATTGATACAAAAATACAAAACTGGGAAAGGACTGTTCATTGATTGTAACCTACTGTCATCCCAGGTGGCGTGTTTGTCTCACATAGCTGCAAATTATCTTATTGGTCAAAAGGAAGCAAAACGTTGGGGTACAGCTCATGGCAGTATCGTTCCTTACCAGGCTTTTAAAACCAAGGATGGCTATATTGTAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAGATCTTGGATTTGCCTGAGTTGATTGATAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAGAGCTTATTAAAATATTATCTGAACGGTTTGAAGAAGAACTGACCAGCAAGTGGTTATATCTTTTTGAAGGCAGTGGAGTCCCGTATGGCCCAATCAACAACATGAAGAATGTATTTGCAGAACCTCAGAACGCTGTCTCTGGCTTCCAAAGCCTGCTGCATTCCTTGGCCCATGGCCCCTTCCTTCATCTTCAAGGATCAGCAAGGGTATTACACAATGGCCTCGTTATGGAGATGGAGCATCCAACTGTGGGGAAGATTTCCGTCCCAGGCCCAGCTGTGAGATACAGTAAGTTCAAGATGTCAGAGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGATACGATGACAGGGCCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGACCAACATGAAACTCACTGA MPSSSDTALGGGGGLSWAEKKLEERRKRRRFLSPQQPPLLLPLLQPQLLQPPPPPPPLLFLAAPGTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSLKEKTKPLTPSIGAKEKEQHVALVTSTLPPLPLPPMLPEDKEADSLRGNISVKAVKKEVEKKLRCLLADLPLPPELPGGDDLSKSPEEKKTATQLHSKRRPKICGPRYGETKEKDIDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEERMEIQFAQE*L*LILPLACMHMELLWLD*YKNTKLGKDCSLIVTYCHPRWRVCLT*LQIILLVKRKQNVGVQLMAVSFLTRLLKPRMAIL*LEQEITSSLPPSARSWICLS*LIIPSIKLTTFGYTIEKSLLKYYLNGLKKN*PASGYIFLKAVESRMAQSTT*RMYLQNLRTLSLASKACCIPWPMAPSFIFKDQQGYYTMASLWRWSIQLWGRFPSQAQL*DTVSSRCQRPGRPRCSGSTQRTS*RRS*DTMTGPSGSCSALEWWTNMKLT FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28466 PREX1::H1-9P ENSG00000124126.14::ENSG00000188662.8 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PREX1 ENSG00000124126.14 protein_coding - - chr20:48624252-48827999:- chr20:48745025:- chr20:47240790-47444536:- chr20:47361562:- H1-9P ENSG00000188662.8 transcribed_unitary_pseudogene - - chr17:50171428-50181255:- chr17:50172177:- chr17:48248789-48258616:- chr17:48249538:- chr20:48739604,chr20:48739604,chr20:48739606 chr17:50172967,chr17:50172966,chr17:50172966 NA NA chr20:47356141,chr20:47356141,chr20:47356143 chr17:48250328,chr17:48250327,chr17:48250327 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PREX1:Oncogene"] 66 17 66 17 ONLY_REF_SPLICE YES_LDAS 0.6932 GT 1.6402 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28473 INTS4::NUP160 ENSG00000149262.19::ENSG00000030066.14 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 198 FALSE NA FALSE NA INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77901421:- chr11:77585464-77705761:- chr11:77612467:- NUP160 ENSG00000030066.14 protein_coding - - chr11:47778087-47848555:- chr11:47835809:- chr11:47799639-47870107:- chr11:47857361:- chr11:77899884,chr11:77899889 chr11:47836082,chr11:47836084 NA NA chr11:77610930,chr11:77610935 chr11:47857634,chr11:47857636 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HEAT_2|50-63|7.9^Cnd3|50-78|3^Adaptin_N|131-212|0.12^HEAT_2|133-189|0.35^HEAT|134-151|0.17^DUF445|162-305|0.00049^HEAT_2|164-233|0.0067^Cnd3|186-270|0.039^CLASP_N|193-273|0.00065^Vac14_Fab1_bd|201-220|6.2^HEAT_EZ|201-227|0.4^HEAT|202-228|0.0021^Cnd1|203-238|0.18^HEAT_2|206-304|5.1e-06^PDS5|207-340|2.1e-10^Cohesin_HEAT|207-224|0.28^MMS19_N|207-260|0.048^SCD|214-275|0.00086^Cohesin_HEAT|234-266|3.1e-06^Adaptin_N|243-362|1e-06^Vac14_Fab1_bd|245-305|7.8e-07^HEAT|253-273|0.00013^Cnd1|254-306|6.5e-06^HEAT_EZ|259-305|0.0054^CLASP_N|282-315|0.0061^HEAT|284-311|0.0001^HEAT_2|289-374|0.00081^SCD|290-306|0.23^Cohesin_HEAT|297-306|0.31^Vac14_Fab1_bd|326-355|3.6^DUF445|328-392|0.079^Cnd1|329-362|0.3^HEAT|337-359|5.8e-05^SCD|343-359|2.4^HEAT_EZ|346-369|0.13^HEAT|428-454|4.1e-06^PDS5|429-517|1.4e-07^CLASP_N|429-466|0.0071^HEAT_2|431-520|3.8e-10^Cohesin_HEAT|433-448|5.7^SCD|435-492|1.9e-05^Adaptin_N|438-509|2.3e-07^Cnd3|438-485|0.00053^HEAT_EZ|439-485|0.011^Cnd1|440-544|3.1e-06^Vac14_Fab1_bd|450-516|0.015^MMS19_N|453-491|0.00086^HEAT|463-490|0.001^Vac14_Fab1_bd|496-552|0.18^CLASP_N|499-521|1^HEAT_EZ|499-516|4.6^HEAT|500-517|0.31^Cohesin_HEAT|500-516|6.7^HEAT_EZ|562-576|6.3^MMS19_N|662-699|1.8^HEAT_EZ|826-845|6.3 none INTRACHROMOSOMAL[chr11:30.03Mb] 14 0 14 0 ONLY_REF_SPLICE YES_LDAS 0.1169 GT 1.8062 AG 1.9656 ENST00000695102.1 1-2378 ENST00000378460.7 841-4209 chr11|-|[1]77901421-77901551[0]|[2]77903540-77903620[0]|[2]77907717-77907810[2]|[1]77918821-77918978[0]|[2]77921340-77921473[1]|[0]77922356-77922471[2]|[1]77924750-77924892[0]|[2]77928342-77928547[1]|[0]77938651-77938825[0]|[2]77941180-77941251[0]|[2]77955942-77956062[2]|[1]77958746-77958834[0]|[2]77960341-77960391[0]|[2]77960953-77961138[0]|[2]77978996-77979102[1]|[0]77981459-77981576[0]|[2]77984711-77984860[0]|[2]77991108-77991299[0]|[2]77994590-77994643[0]<==>chr11|-|[2]47779105-47779194[0]|[2]47780343-47780447[0]|[2]47783073-47783198[0]|[2]47784922-47785063[2]|[1]47786453-47786554[2]|[1]47788182-47788305[1]|[0]47788501-47788611[1]|[0]47791930-47791990[0]|[2]47792786-47792946[1]|[0]47797779-47797884[0]|[2]47797978-47798074[2]|[1]47798168-47798262[0]|[2]47798368-47798463[0]|[2]47801811-47801930[0]|[2]47803438-47803536[0]|[2]47804549-47804618[2]|[1]47806153-47806312[1]|[0]47807070-47807140[2]|[1]47808396-47808529[0]|[2]47812064-47812224[1]|[0]47812302-47812429[2]|[1]47812882-47813047[1]|[0]47813316-47813415[0]|[2]47815479-47815649[0]|[2]47815946-47816029[0]|[2]47818056-47818124[0]|[2]47819374-47819458[2]|[1]47821724-47821821[0]|[2]47822087-47822164[0]|[2]47835651-47835809[0] atggcggcgcaccttaagaagcgggtttatgaggaattcacgaaagtggttcagccacaggaggaaattgctactaagaaactccgactaacaaaaccaagtaaatctgcagcactccacatagatctgtgtaaagctacctccccagcagatgctttgcaatacttgctccagtttgccaggaagcctgtcgaggcggaaagcgtagagggagtagtcaggattctcttggaacattattacaaggtctcactccaggctggagtgcagtggtgctatcatggttcactgaaacctccacctcccaggcttatgcaatcctctcacctcagcctcctaagtagctggaactataggcatgtgccaccatgcctggctaatcatttcttaattgtggagaatgatccatctgtgagactgaaaattgcatcattgttgggtttattatcaaagacagcaggattttcaccagactgcattatggatgatgccatcaacatcctgcagaatgaaaagtctcatcaagtcctagctcaactgctggatactttgcttgcaattggcactaagctaccagagaatcaagctatccaaatgcgattagttgatgtggcctgcaagcatctgacagatacgtctcatggtgtaagaaataagtgcctgcagttacttggcaatcttggctctttggagaaaagtgtcacaaaagatgcagaaggcctagctgccagagatgtccagaagattataggggattacttcagtgaccaagacccacgtgtcagaacagcagctataaaagccatgttgcagctccatgaaagaggactgaaattacaccaaacaatttataatcaggcctgtaaattactctctgatgactatgaacaagtgcgcagtgctgcagtccagcttatctgggtcgtcagtcagctctatcctgaaagcattgtcccaattccttcttctaatgaagaaatacgcttagttgatgatgcgtttggcaaaatttgtcacatggtcagtgatggctcttgggtggttcgtgttcaggcagcaaaactgttgggctctatggagcaagtcagttctcatttcttggagcagacccttgacaagaagctgatgtcagatctgaggaggaaacgtactgcacatgagcgtgccaaggaactttacagttcgggggagttttccagtggcagaaagtggggagatgatgctcccaaggaagaagtagataccggggctgtgaacttgattgagtcaggagcttgtggagcttttgttcatgggttggaagatgagatgtatgaggttcgtattgctgctgtggaggccctctgcatgttggcccagtcttcaccctcttttgctgagaagtgccttgatttcctagttgacatgttcaacgatgaaattgaggaagtacgtctgcagtctatacataccatgagaaaaatctctaacaacatcaccctccgagaagatcagcttgacactgtcctggctgtgctagaggattcatccagagatattcgagaggctcttcatgaactcttatgctgtactaatgtttcaaccaaagaagggattcatcttgcattggtggagctgctgaaaaatttaaccaagtaccctactgatagggactccatatggaagtgcttgaagtttctgggaagtcggcatccaaccctggtgcttcccttggtgccagagcttctgagcacccacccattttttgacacagctgaaccagacatggatgatccagcttatattgcagttttggtacttattttcaatgctgctaaaacctgtccaacaatgccagcattgttctcagatcacaccttcaggcactatgcctacctccgagacagtctttctcatcttgttcctgccttgaggttaccaggtagaaaactggtgtcatcagctgtttctcccagcatcatacctcaagaggatccttcccagcagttcctgcagcagagccttgaaagagtgtatagtcttcagcacttggaccctcagggagcccaggagctgctggaattcaccatcagggatctgcaaagacttggagaacttcaatctgaattggcaggagtagctgatttctctgccacctatcttcgctgtcaactacttctcatcaaggccttgcaggaaaagttgtggaatgtagctgcccctttgtatttgaagcagagtgatttggcctcagcagcagcgaaacagattatggaagagacctacaaaatggaattcatgtacagtggtgtggagaataagcaggtggtgattatacatcacatgaggctgcaggccaaagctttgcaacttatagtaacagcacgaactacacgaggGAGCAAATGTGCCTAATGGTAGCTGACATGCTGGAGTATGTCCCTGTGAAGAAAGACCTTCGGCTTACTGCTGGAACTGGACACAAATTACGGCTTGCTTATTCCCCCACCATGGGACTCTACCTGGGGATATACATGCATGCACCAAAACGAGGACAGTTCTGCATTTTCCAGTTGGTGAGCACTGAGAGTAATCGCTATAGTCTCGATCATATTTCTTCACTGTTCACTTCTCAGGAGACACTGATTGACTTTGCCTTAACTTCCACGGATATCTGGGCCCTGTGGCATGATGCTGAGAACCAAACAGTAGTGAAATACATCAACTTTGAACATAATGTTGCAGGTCAGTGGAATCCAGTTTTTATGCAGCCTCTGCCAGAGGAAGAGATTGTCATCAGAGATGATCAAGACCCCAGAGAGATGTATCTGCAAAGTCTTTTTACACCAGGACAATTCACAAATGAAGCTTTATGTAAGGCTTTACAGATTTTCTGCCGAGGAACTGAGAGGAATTTGGATCTTTCCTGGAGTGAACTGAAGAAAGAAGTTACTTTAGCTGTTGAAAATGAGCTTCAAGGAAGTGTAACAGAGTATGAATTCTCCCAGGAGGAGTTTCGAAATTTACAACAAGAATTCTGGTGCAAGTTCTATGCCTGTTGTCTTCAGTATCAAGAAGCCCTCTCTCACCCTCTTGCCCTACATTTGAATCCACACACAAACATGGTGTGCCTGCTGAAAAAAGGGTACCTGTCTTTCCTTATTCCCTCATCCTTAGTGGATCATTTGTATCTCCTGCCTTATGAGAACCTTTTGACAGAAGATGAGACAACCATATCTGATGATGTGGACATCGCTCGGGATGTCATATGTCTTATAAAATGCCTCCGGCTGATTGAAGAGTCAGTAACTGTGGATATGTCAGTTATAATGGAAATGAGTTGTTATAACCTACAGTCTCCGGAAAAGGCTGCAGAGCAGATTCTGGAAGATATGATCACTATTGATGTAGAAAATGTGATGGAGGATATTTGTAGTAAACTGCAAGAGATTAGGAACCCAATCCATGCAATTGGACTACTTATACGGGAAATGGATTATGAAACAGAAGTGGAAATGGAAAAGGGATTCAATCCAGCTCAGCCTTTGAATATTCGAATGAATCTTACCCAGCTCTATGGTAGTAACACAGCAGGGTATATTGTGTGCAGAGGGGTGCATAAAATCGCCAGTACTCGTTTCCTGATCTGCAGAGATCTTTTGATCTTACAGCAGCTGTTAATGAGGCTTGGAGATGCTGTGATTTGGGGAACTGGTCAGCTCTTTCAAGCTCAGCAAGACCTACTACATCGAACAGCTCCCCTACTCTTATCTTATTACCTCATTAAATGGGGAAGTGAGTGCTTGGCAACTGATGTTCCACTTGACACACTGGAGTCTAATCTCCAACACTTATCAGTACTGGAATTAACAGACTCTGGTGCTTTAATGGCAAATAGGTTTGTATCTAGTCCTCAGACTATTGTGGAGTTATTCTTCCAAGAAGTTGCAAGAAAACACATTATATCTCACCTCTTCTCTCAGCCAAAGGCACCTCTGAGCCAAACTGGATTGAATTGGCCTGAAATGATTACTGCAATTACCAGTTATTTATTGCAGCTTTTATGGCCTAGCAATCCTGGTTGTCTCTTTCTAGAATGTTTGATGGGAAATTGCCAATATGTACAATTGCAGGATTATATTCAACTGCTACATCCCTGGTGTCAAGTCAATGTTGGTTCCTGTCGATTTATGCTGGGAAGGTGTTACCTAGTTACAGGAGAAGGACAGAAGGCTCTGGAATGTTTTTGTCAGGCAGCATCTGAAGTAGGCAAAGAGGAATTCTTGGATCGCTTGATTCGCTCAGAGGATGGGGAGATCGTGTCTACCCCCAGGCTGCAGTATTATGACAAGGTTTTACGACTACTAGATGTCATTGGTTTGCCTGAACTGGTTATTCAGTTGGCTACATCAGCCATAACTGAAGCAGGTGATGACTGGAAAAGTCAGGCTACTCTAAGGACATGTATTTTCAAACATCATTTGGATTTGGGTCACAATAGCCAAGCATATGAAGCCTTAACCCAAATTCCTGATTCCAGCAGGCAATTAGATTGTTTACGGCAGTTGGTGGTAGTTCTTTGTGAACGCTCACAGCTACAGGATCTTGTAGAGTTTCCCTATGTGAATCTGCATAATGAGGTTGTGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACTCACAATTACTATGAACTTCTGTATGCCTTTCACATCTATCGCCACAATTACCGCAAGGCTGGCACAGTGATGTTTGAGTATGGAATGCGGCTTGGCAGAGAAGTTCGAACTCTCCGGGGACTTGAGAAACAAGGCAACTGTTATCTGGCTGCTCTCAATTGTTTACGACTTATTCGTCCAGAATATGCGTGGATTGTGCAGCCAGTGTCTGGTGCAGTGTATGATCGCCCTGGAGCATCCCCTAAGAGGAATCATGATGGAGAATGCACAGCTGCCCCCACAAATCGACAAATTGAAATCCTGGAACTGGAAGATCTGGAGAAAGAGTGTTCCTTGGCTCGCATCCGCCTCACTTTGGCTCAGCATGATCCATCAGCGGTTGCAGTTGCTGGAAGTTCATCAGCAGAGGAAATGGTCACTCTCTTGGTTCAGGCGGGCCTCTTTGACACTGCCATATCACTCTGTCAGACTTTTAAGCTTCCCTTAACGCCAGTCTTTGAAGGGCTTGCCTTCAAATGCATCAAATTGCAATTTGGAGGAGAGGCAGCACAAGCAGAAGCCTGGGCCTGGCTAGCAGCCAATCAGCTCTCATCTGTCATCACTACTAAGGAGTCTAGTGCTACAGATGAAGCATGGCGACTATTATCCACTTACCTGGAGAGGTACAAAGTCCAGAATAACTTGTATCACCACTGTGTAATCAACAAGCTCTTGTCTCATGGAGTGCCTCTGCCTAATTGGCTTATAAACAGTTACAAGAAGGTTGATGCTGCTGAATTGCTTCGTTTATACTTAAACTATGACCTTTTAGAAGAAGCTGTGGATTTGGTGTCAGAATATGTGGATGCTGTATTGGGAAAAGGACATCAATACTTCGGAATTGAGTTTCCACTGTCCGCAACAGCCCCAATGGTGTGGCTTCCATACTCCTCTATTGATCAGCTTCTCCAAGCTCTGGGAGAGAACAGTGCCAACAGTCACAACATCGCACTGTCCCAGAAAATACTTGACAAATTGGAGGACTACCAGCAAAAAGTTGATAAGGCAACACGGGATTTATTATATCGTCGGACCTTGTGA MAAHLKKRVYEEFTKVVQPQEEIATKKLRLTKPSKSAALHIDLCKATSPADALQYLLQFARKPVEAESVEGVVRILLEHYYKVSLQAGVQWCYHGSLKPPPPRLMQSSHLSLLSSWNYRHVPPCLANHFLIVENDPSVRLKIASLLGLLSKTAGFSPDCIMDDAINILQNEKSHQVLAQLLDTLLAIGTKLPENQAIQMRLVDVACKHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCPTMPALFSDHTFRHYAYLRDSLSHLVPALRLPGRKLVSSAVSPSIIPQEDPSQQFLQQSLERVYSLQHLDPQGAQELLEFTIRDLQRLGELQSELAGVADFSATYLRCQLLLIKALQEKLWNVAAPLYLKQSDLASAAAKQIMEETYKMEFMYSGVENKQVVIIHHMRLQAKALQLIVTARTTRGSKCA*W*LTCWSMSL*RKTFGLLLELDTNYGLLIPPPWDSTWGYTCMHQNEDSSAFSSW*ALRVIAIVSIIFLHCSLLRRH*LTLP*LPRISGPCGMMLRTKQ**NTSTLNIMLQVSGIQFLCSLCQRKRLSSEMIKTPERCICKVFLHQDNSQMKLYVRLYRFSAEELRGIWIFPGVN*RKKLL*LLKMSFKEV*QSMNSPRRSFEIYNKNSGASSMPVVFSIKKPSLTLLPYI*IHTQTWCAC*KKGTCLSLFPHP*WIICISCLMRTF*QKMRQPYLMMWTSLGMSYVL*NASG*LKSQ*LWICQL*WK*VVITYSLRKRLQSRFWKI*SLLM*KM*WRIFVVNCKRLGTQSMQLDYLYGKWIMKQKWKWKRDSIQLSL*IFE*ILPSSMVVTQQGILCAEGCIKSPVLVS*SAEIF*SYSSC**GLEML*FGELVSSFKLSKTYYIEQLPYSYLITSLNGEVSAWQLMFHLTHWSLISNTYQYWN*QTLVL*WQIGLYLVLRLLWSYSSKKLQENTLYLTSSLSQRHL*AKLD*IGLK*LLQLPVIYCSFYGLAILVVSF*NV*WEIANMYNCRIIFNCYIPGVKSMLVPVDLCWEGVT*LQEKDRRLWNVFVRQHLK*AKRNSWIA*FAQRMGRSCLPPGCSIMTRFYDY*MSLVCLNWLFSWLHQP*LKQVMTGKVRLL*GHVFSNIIWIWVTIAKHMKP*PKFLIPAGN*IVYGSWW*FFVNAHSYRIL*SFPM*ICIMRLWE*LSHVLELWTL*LTITMNFCMPFTSIATITARLAQ*CLSMECGLAEKFELSGDLRNKATVIWLLSIVYDLFVQNMRGLCSQCLVQCMIALEHPLRGIMMENAQLPPQIDKLKSWNWKIWRKSVPWLASASLWLSMIHQRLQLLEVHQQRKWSLSWFRRASLTLPYHSVRLLSFP*RQSLKGLPSNASNCNLEERQHKQKPGPG*QPISSHLSSLLRSLVLQMKHGDYYPLTWRGTKSRITCITTV*STSSCLMECLCLIGL*TVTRRLMLLNCFVYT*TMTF*KKLWIWCQNMWMLYWEKDINTSELSFHCPQQPQWCGFHTPLLISFSKLWERTVPTVTTSHCPRKYLTNWRTTSKKLIRQHGIYYIVGPC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28474 MATN2::TMEM74 ENSG00000132561.14::ENSG00000164841.5 EFM192A SRR8615292 SRR8639155 BREAST carcinoma metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97979008:+ chr8:98881068-99048952:+ chr8:98991236:+ TMEM74 ENSG00000164841.5 protein_coding - - chr8:108606850-108787594:- chr8:108608826:- chr8:109619079-109799823:- chr8:109621055:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TMEM74:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:10.57Mb] 14 10 14 10 ONLY_REF_SPLICE YES_LDAS 0.2004 GT 1.5546 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28482 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 201 TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143749065:+ chr6:143857982-144152322:+ chr6:144070202:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143937649:+ chr6:144185573-144259480:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RPEL|130-151|1.9e-11 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.03Mb];NEIGHBORS[33251] 42 33 42 31.5 ONLY_REF_SPLICE YES_LDAS 0.8591 GT 1.9656 AG 1.9899 ENST00000367584.8 1-466 ENST00000237275.9 599-669 chr6|+|[0]143536991-143537207[0]|[1]143712016-143712183[0]|[1]143748985-143749065[0]<==>chr6|+|[1]143937649-143937719[2] atggccgaggcgggctggcgccccgcggcgtccccggtcgatccggccgggcaggcggcggcggtcccagtccccgagcccgaggcgcccgccccgccggcggcgcctgccctgcgctggcttcccggggacccgagcccccgcggccgctcacagagcgacctctcgtcgtcctcgagcaggggccgcccgctccgggtccacatctccggctcagttgacggactggacaaagcttctatagcaaactcagatggccccacagcaggttcccaaacacctcccttcaaaagaaaggggaaactatccaccattggtaaaatctttaagccttggaaatggaggaaaaagaagaccagcgacaaatttagagaaacctcggcagtattagaaaggaagatatccacacgacaaagtagagaggagctgataagaaggggagtgcttaaggaattgcctgatcaagGATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAA MAEAGWRPAASPVDPAGQAAAVPVPEPEAPAPPAAPALRWLPGDPSPRGRSQSDLSSSSSRGRPLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAVLERKISTRQSREELIRRGVLKELPDQGLAMDPASGAKLRQGFSKSSKKD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28484 ASH1L::RIT1 ENSG00000116539.14::ENSG00000143622.12 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 204 FALSE NA FALSE NA ASH1L ENSG00000116539.14 protein_coding - - chr1:155335268-155563162:- chr1:155360301:- chr1:155305059-155532953:- chr1:155330092:- RIT1 ENSG00000143622.12 protein_coding - - chr1:155897808-155911404:- chr1:155900618:- chr1:155867599-155881195:- chr1:155870409:- chr1:155357904,chr1:155357908 chr1:155904497,chr1:155904498 NA NA chr1:155327695,chr1:155327699 chr1:155874288,chr1:155874289 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PHD|1534-1556|2.4^AWS|2103-2141|4.8e-20^PHD|2133-2146|7^SET|2156-2261|2.2e-29^Bromodomain|2461-2535|3.7e-18^PHD_5|2583-2628|1.8e-12^PHD|2588-2628|3.1e-07^PHD_2|2598-2628|0.00021^BAH|2663-2797|8.6e-25 none ["Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.34Mb] 20 15 20 15 ONLY_REF_SPLICE YES_LDAS 0.4091 GT 1.6402 AG 1.7465 ENST00000368346.7 1-6810 ENST00000539040.6 322-552 chr1|-|[2]155360301-155360409[2]|[1]155370504-155370650[2]|[1]155370777-155370983[2]|[1]155378281-155378389[1]|[0]155378503-155378548[0]|[2]155380043-155380131[1]|[0]155395459-155395553[2]|[1]155415744-155415923[2]|[1]155438327-155439068[1]|[0]155459797-155459898[1]|[0]155477886-155482449[0]|[2]155521100-155521519[0]<==>chr1|-|[2]155900388-155900618[0] atggaccctagaaatactgctatgttaggattgggttctgattccgaaggtttttcaagaaagagtccttctgccatcagtactggcacattggtcagtaagagagaagtagagctagaaaaaaacacaaaggaggaagaggaccttcgcaaacggaatcgagaaagaaacatcgaagctgggaaagatgatggtttgactgatgcacagcaacagttttcagtgaaagaaacaaacttttcagagggaaatttaaaattgaaaattggcctccaggctaagagaactaaaaaacctccaaagaacttggagaactatgtatgtcgacctgccataaaaacaactattaagcacccaaggaaagcacttaaaagtggaaagatgacggatgaaaagaatgaacactgtccttcaaaacgagacccttcaaagttgtacaagaaagcagatgatgttgcagccattgaatgccagtctgaagaagtcatccgtcttcattcacagggagaaaacaatcctttgtctaagaagctgtctccagtacactcagaaatggcagattatattaatgcaacgccatctactcttcttggtagccgggatcctgatttaaaggacagagcattacttaatggaggaactagtgtaacagaaaagttggcacagctgattgctacctgtcctccttccaagtcttccaagacaaaaccgaagaagttaggaactggcactacagcaggattggttagcaaggatttgatcaggaaagcaggtgttggctctgtagctggaataatacataaggacttaataaaaaagccaaccatcagcacagcagttggattggtaactaaagatcctgggaaaaagccagtgtttaatgcagcagtaggattggtcaataaggactctgtgaaaaaactgggaactggcactacagcggtattcattaataaaaacttaggcaaaaagccaggaactatcactacagtaggactgctaagcaaagattcaggaaagaagctaggaattggtattgttccaggtttagtgcataaagagtctggcaagaagttaggacttggcactgtggttggactggttaataaagatttgggaaagaaattgggttctactgttggcctagtggccaaggactgtgcaaagaagattgtagcaagttcagcaatgggattggttaataaggacattggaaagaaactaatgagttgtcctttggcaggtctgatcagtaaagatgccataaaccttaaagccgaagcactgctccccactcaggaaccgcttaaggcttcttgtagtacaaacatcaataatcaggaaagtcaggaactttctgaatccctgaaagatagtgccaccagcaaaacttttgaaaagaatgttgtacggcagaataaagaaagcatattggaaaagttctcagtacgaaaagaaatcattaatttggagaaagaaatgtttaatgaaggaacatgcattcagcaagacagtttctcatccagtgaaaagggatcttatgaaacctcaaagcatgaaaagcagcctcctgtatattgcacttctccggactttaaaatgggaggtgcttctgatgtatctaccgctaaatccccattcagtgcagtaggagaaagcaatctcccttccccatcacctactgtatctgttaatcctttaaccagaagtccccctgaaacttcttcacagttggctcctaatccattacttttaagttctactacagaactaatcgaagaaatttctgaatctgttggaaagaaccagtttacttctgaaagtacccacttgaacgttggtcataggtcagttggtcatagtataagtattgaatgtaaagggattgataaagaggtaaatgattcaaaaactacccatatagatattccaagaataagctcttcccttggaaaaaagccaagtttgacttctgaatccagcattcatactattactccttcagttgttaacttcactagtttatttagtaataagccttttttaaaactgggtgcagtatctgcatcagacaaacactgccaagttgctgaaagcctaagtactagtttgcagtccaaaccattaaaaaaaagaaaaggaagaaaacctcggtggactaaagtggtggcaagaagcacatgccggtctccaaaagggctagaattagaaagatcagagctttttaaaaacgtttcatgtagctcactatcaaatagtaattctgagccagccaagtttatgaaaaacattggacccccttcatttgtagatcatgacttccttaaacgccgattgccaaagttgagcaaatccacagctccatctcttgctctcttagctgatagtgaaaaaccatctcataagtcttttgctactcacaaactatcctccagtatgtgtgtctctagtgaccttttgtctgatatttataagcccaaaagaggaaggcctaaatctaaggagatgcctcaactggaagggccacctaaaaggactttaaaaatccctgcttctaaagtgttttctttacagtctaaggaagaacaagaacccccaattttacagccagaaattgaaatcccttccttcaaacaaggtctgtctgtgtctccttttccaaaaaagagaggcaggcctaagaggcaaatgaggtcaccagtcaagatgaagccacctgtactgtcagtggctccatttgttgccactgaaagtccaagcaagctagaatctgaaagtgacaaccatagaagtagcagtgatttctttgagagcgaggatcaacttcaggatccagatgacctagatgacagtcataggccaagtgtctgtagtatgagtgaccttgagatggaaccagataaaaaaattaccaagagaaacaatggacaattaatgaaaacaattatccgcaaaataaataaaatgaagactttaaagagaaagaaactgttgaatcagattctttcaagttctgtagaatcaagtaataaagggaaagtgcaatccaaactccataatacggtatcaagtcttgctgccacatttggctctaaattgggccaacagataaatgtcagcaagaaaggaaccatttatataggaaagagaagaggtcgcaaaccaaaaactgtcttaaatggtattctttctggtagtcctactagccttgctgttcttgagcaaacagctcaacaggcagctgggtcagcattaggacagattcttcccccattactgccttcatctgctagtagttctgagattcttccatcacctatttgctctcagtcttctgggactagtggaggtcagagccctgtaagtagtgatgcaggttttgttgaacccagttcagtgccatatttgcatttacactccagacagggcagtatgattcagactcttgcaatgaagaaggcctcaaaggggaggaggcggttatctcctcctactttgttgccaaattctccttcgcacttgagtgaactcacatctctaaaagaagctactccttccccaatcagtgagtctcatagtgatgagaccattcccagtgatagtggaattggaacagataataacagcacatcagacagggcagagaaattttgtgggcaaaaaaagaggaggcattcttttgagcatgtttctctgattccccctgaaacctctacagtgctaagcagtcttaaagaaaaacataaacacaaatgtaagcgcaggaatcatgattacctcagctatgacaagatgaaaaggcagaaacgaaaacggaaaaagaaatatccccagcttcgaaatagacaggatccagactttattgcagagctggaggaactaataagtcgcctaagtgaaattcggatcactcatcgaagtcatcattttatcccccgagatcttctgccaactatctttcgaatcaactttaatagtttctatacacatccttctttccccttagaccctttgcactacattcgaaaacctgacttaaaaaagaaaagagggagaccccctaagatgagggaggcaatggctgaaatgccttttatgcacagccttagttttcctctttctagtactggattctatccatcttatggtatgccttactctccttcaccccttacagctgctcccataggattaggttactatggaaggtatcctcccactctttatccacctcctccatctccttctttcaccacgccacttccacctccttcctatatgcatgctggtcatttacttctcaatcctgccaaataccataagaaaaagcataagctacttcgacaggaggcctttcttacaaccagcaggactcccctcctttccatgagtacctaccccagtgttcctcctgagatggcctatggttggatggttgagcacaaacacaggcaccgtcacaaacacagagaacaccgttcttctgaacaaccccaggtttctatggacactggctcttcccgatctgtcctggaatctttgaagcgctatagatttggaaaggatgctgttggagagcgatataagcataaggaaaagcaccgttgtcacatgtcctgccctcatctctctccttcaaaaagcttaataaacagagaggaacagtgggtccaccgagagccttcagaatctagtccattggccttgggattgcagacacctttacagattgactgttcagaaagttctccaagcttatcccttggaggattcactcccaactctgagccagccagcagtgatgaacatacaaaccttttcacaagtgcaataggcagctgcagagtttcaaaccctaactccagtggccggaagaaattaactgacagccctggactcttttctgcacaggacacttcactaaatcggcttcacagaaaggagtcactgccttctaacgaaagggcagtacagactttggcaggctcccagccaacctctgataaaccctcccagcggccatcagagagcacaaattgtagccctacccggaaaaggtcttcatctgagagtacttcttcaacagtaaacggagttccctctcgaagtccaagattagttgcttctggggatgactctgtggatagtctgctgcagcggatggtacaaaatgaggaccaagagcccatggagaaaagtattgatgctgtgattgcaactgcctctgcaccaccttcttccagtccaggccgtagccacagcaaggaccgaaccctgggaaaaccagacagccttttagtgcctgcagtcacaagtgactcttgcaataatagcatctcactcctatctgaaaagttgacaagcagctgttccccccatcatatcaagagaagtgtagtggaagctatgcaacgccaagctcggaaaatgtgcaattacgacaaaatcttggccacaaagaaaaacctagaccatgtcaataaaatcttaaaagccaaaaaacttcaaaggcaggccaggacagggaataactttgtgaaacgtaggccaggtcgacctcggaaatgtccccttcaggctgtcgtatcaatgcaagcattccaggctgctcagtttgtcaacccagaattgaacagagacgaggaaggagcagcactgcacctcagtcctgacacagttacagatgtaattgaggctgttgttcagagtgtaaatctgaacccagaacataaaaaggggttgaagagaaaaggttggctattggaagaacagaccagaaaaaagcagaagccattaccagaggaagaagagcaagagaataataaaagctttaatgaagcaccagttgagattcccagtccttctgaaaccccagctaaaccttctgaacctgaaagtaccttgcagcctgtgctttctctcatcccaagggaaaagaagcccccacgtcccccaaagaagaagtatcagaaagcagggctgtattctgacgtttacaaaactacagacccaaagagtcgattgatccaattaaagaaagagaagctggagtatactccaggagagcatgaatatggattatttccagcgcccattcatgttgtgttttttgtttcaggaaagtatctaagacaaaagagaattgacttccagcttccttatgatatcctttggcagtggaaacacaatcagctatacaaaaagccagatgtcccactatataagaaaattcgttcaaatgtctacgttgatgtcaaacccctttctggttacgaagctaccacctgtaactgtaagaagccagatgatgacaccaggaagggctgtgttgatgactgcctcaatagaatgatctttgctgagtgttcccccaacacttgcccatgtggcgagcaatgctgtaaccagaggatacagaggcatgaatgggtgcaatgtctagaacgatttcgagctgaggaaaaaggttggggaatcagaaccaaagagcccctaaaagctgggcagttcatcattgaatacctaggggaggtcgtcagtgaacaggagttcaggaacaggatgattgagcagtatcataatcacagtgaccactactgcctgaacctggatagtgggatggtgattgacagttaccgcatgggaaatgaggcccgattcatcaaccatagctgtgacccaaattgtgaaatgcagaaatggtctgttaatggagtataccggattggactctatgctcttaaagacatgccagctgggactgaactcacttatgattataactttcattccttcaatgtggaaaaacagGTCACCAAGGAAGAAGGATTGGCCTTGGCCCGAGAATTCAGCTGTCCCTTTTTTGAGACATCTGCTGCATACCGCTACTATATTGATGATGTTTTCCATGCCCTTGTACGGGAGATACGTAGGAAAGAAAAGGAGGCAGTACTGGCCATGGAGAAAAAATCTAAGCCCAAAAACAGTGTATGGAAGAGGCTAAAATCACCATTCCGGAAGAAGAAAGATTCAGTAACTTGA MDPRNTAMLGLGSDSEGFSRKSPSAISTGTLVSKREVELEKNTKEEEDLRKRNRERNIEAGKDDGLTDAQQQFSVKETNFSEGNLKLKIGLQAKRTKKPPKNLENYVCRPAIKTTIKHPRKALKSGKMTDEKNEHCPSKRDPSKLYKKADDVAAIECQSEEVIRLHSQGENNPLSKKLSPVHSEMADYINATPSTLLGSRDPDLKDRALLNGGTSVTEKLAQLIATCPPSKSSKTKPKKLGTGTTAGLVSKDLIRKAGVGSVAGIIHKDLIKKPTISTAVGLVTKDPGKKPVFNAAVGLVNKDSVKKLGTGTTAVFINKNLGKKPGTITTVGLLSKDSGKKLGIGIVPGLVHKESGKKLGLGTVVGLVNKDLGKKLGSTVGLVAKDCAKKIVASSAMGLVNKDIGKKLMSCPLAGLISKDAINLKAEALLPTQEPLKASCSTNINNQESQELSESLKDSATSKTFEKNVVRQNKESILEKFSVRKEIINLEKEMFNEGTCIQQDSFSSSEKGSYETSKHEKQPPVYCTSPDFKMGGASDVSTAKSPFSAVGESNLPSPSPTVSVNPLTRSPPETSSQLAPNPLLLSSTTELIEEISESVGKNQFTSESTHLNVGHRSVGHSISIECKGIDKEVNDSKTTHIDIPRISSSLGKKPSLTSESSIHTITPSVVNFTSLFSNKPFLKLGAVSASDKHCQVAESLSTSLQSKPLKKRKGRKPRWTKVVARSTCRSPKGLELERSELFKNVSCSSLSNSNSEPAKFMKNIGPPSFVDHDFLKRRLPKLSKSTAPSLALLADSEKPSHKSFATHKLSSSMCVSSDLLSDIYKPKRGRPKSKEMPQLEGPPKRTLKIPASKVFSLQSKEEQEPPILQPEIEIPSFKQGLSVSPFPKKRGRPKRQMRSPVKMKPPVLSVAPFVATESPSKLESESDNHRSSSDFFESEDQLQDPDDLDDSHRPSVCSMSDLEMEPDKKITKRNNGQLMKTIIRKINKMKTLKRKKLLNQILSSSVESSNKGKVQSKLHNTVSSLAATFGSKLGQQINVSKKGTIYIGKRRGRKPKTVLNGILSGSPTSLAVLEQTAQQAAGSALGQILPPLLPSSASSSEILPSPICSQSSGTSGGQSPVSSDAGFVEPSSVPYLHLHSRQGSMIQTLAMKKASKGRRRLSPPTLLPNSPSHLSELTSLKEATPSPISESHSDETIPSDSGIGTDNNSTSDRAEKFCGQKKRRHSFEHVSLIPPETSTVLSSLKEKHKHKCKRRNHDYLSYDKMKRQKRKRKKKYPQLRNRQDPDFIAELEELISRLSEIRITHRSHHFIPRDLLPTIFRINFNSFYTHPSFPLDPLHYIRKPDLKKKRGRPPKMREAMAEMPFMHSLSFPLSSTGFYPSYGMPYSPSPLTAAPIGLGYYGRYPPTLYPPPPSPSFTTPLPPPSYMHAGHLLLNPAKYHKKKHKLLRQEAFLTTSRTPLLSMSTYPSVPPEMAYGWMVEHKHRHRHKHREHRSSEQPQVSMDTGSSRSVLESLKRYRFGKDAVGERYKHKEKHRCHMSCPHLSPSKSLINREEQWVHREPSESSPLALGLQTPLQIDCSESSPSLSLGGFTPNSEPASSDEHTNLFTSAIGSCRVSNPNSSGRKKLTDSPGLFSAQDTSLNRLHRKESLPSNERAVQTLAGSQPTSDKPSQRPSESTNCSPTRKRSSSESTSSTVNGVPSRSPRLVASGDDSVDSLLQRMVQNEDQEPMEKSIDAVIATASAPPSSSPGRSHSKDRTLGKPDSLLVPAVTSDSCNNSISLLSEKLTSSCSPHHIKRSVVEAMQRQARKMCNYDKILATKKNLDHVNKILKAKKLQRQARTGNNFVKRRPGRPRKCPLQAVVSMQAFQAAQFVNPELNRDEEGAALHLSPDTVTDVIEAVVQSVNLNPEHKKGLKRKGWLLEEQTRKKQKPLPEEEEQENNKSFNEAPVEIPSPSETPAKPSEPESTLQPVLSLIPREKKPPRPPKKKYQKAGLYSDVYKTTDPKSRLIQLKKEKLEYTPGEHEYGLFPAPIHVVFFVSGKYLRQKRIDFQLPYDILWQWKHNQLYKKPDVPLYKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDSGMVIDSYRMGNEARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRKEKEAVLAMEKKSKPKNSVWKRLKSPFRKKKDSVT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 155307880 FALSE 155874595 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28485 MTSS1::FER1L6-AS1 ENSG00000170873.19::ENSG00000181171.5 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124699526:- chr8:125563025-125740714:- chr8:125711767:- FER1L6-AS1 ENSG00000181171.5 lncRNA - - chr8:123984138-124040782:- chr8:124004232:- chr8:124996378-125053023:- chr8:125016472:- chr8:124626551,chr8:124626554 chr8:124027404,chr8:124027404 NA NA chr8:125638792,chr8:125638795 chr8:125039644,chr8:125039644 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.51Mb] 12 2 12 2 ONLY_REF_SPLICE YES_LDAS 0.1637 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28487 OSBPL5::ZNF195 ENSG00000021762.20::ENSG00000005801.18 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 209 FALSE NA FALSE NA OSBPL5 ENSG00000021762.20 protein_coding - - chr11:3087107-3166739:- chr11:3165216:- chr11:3108337-3187969:- chr11:3186446:- ZNF195 ENSG00000005801.18 protein_coding - - chr11:3339261-3379222:- chr11:3371703:- chr11:3360491-3400452:- chr11:3392933:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.17Mb] 10 1 10 1 ONLY_REF_SPLICE YES_LDAS 0.1286 GT 1.6729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28489 PHACTR2::ZC2HC1B ENSG00000112419.15::ENSG00000118491.10 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 202 TRUE 380 TRUE 140 PHACTR2 ENSG00000112419.15 protein_coding + + chr6:143536845-143831185:+ chr6:143712183:+ chr6:143857982-144152322:+ chr6:144033320:+ ZC2HC1B ENSG00000118491.10 protein_coding + + chr6:143864436-143938343:+ chr6:143937649:+ chr6:144185573-144259480:+ chr6:144258786:+ chr6:143749628,chr6:143749628 chr6:143913091,chr6:143913088 NA NA chr6:144070765,chr6:144070765 chr6:144234228,chr6:144234225 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RPEL|130-151|1.9e-11 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.03Mb];NEIGHBORS[33251] 9 12 9 1.5 ONLY_REF_SPLICE YES_LDAS 0.1227 GT 1.8256 AG 1.9899 ENST00000367584.8 1-385 ENST00000237275.9 599-669 chr6|+|[0]143536991-143537207[0]|[1]143712016-143712183[0]<==>chr6|+|[1]143937649-143937719[2] atggccgaggcgggctggcgccccgcggcgtccccggtcgatccggccgggcaggcggcggcggtcccagtccccgagcccgaggcgcccgccccgccggcggcgcctgccctgcgctggcttcccggggacccgagcccccgcggccgctcacagagcgacctctcgtcgtcctcgagcaggggccgcccgctccgggtccacatctccggctcagttgacggactggacaaagcttctatagcaaactcagatggccccacagcaggttcccaaacacctcccttcaaaagaaaggggaaactatccaccattggtaaaatctttaagccttggaaatggaggaaaaagaagaccagcgacaaatttagagaaacctcggcagGATTAGCTATGGACCCTGCTTCTGGAGCAAAACTCAGACAAGGATTTAGTAAATCTTCTAAAAAAGATTAA MAEAGWRPAASPVDPAGQAAAVPVPEPEAPAPPAAPALRWLPGDPSPRGRSQSDLSSSSSRGRPLRVHISGSVDGLDKASIANSDGPTAGSQTPPFKRKGKLSTIGKIFKPWKWRKKKTSDKFRETSAGLAMDPASGAKLRQGFSKSSKKD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28491 MINDY3::DCLRE1C ENSG00000148481.14::ENSG00000152457.19 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 205 FALSE NA FALSE NA MINDY3 ENSG00000148481.14 protein_coding - - chr10:15778170-15860507:- chr10:15786561:- chr10:15820169-15902506:- chr10:15828560:- DCLRE1C ENSG00000152457.19 protein_coding - - chr10:14897359-14954432:- chr10:14939869:- chr10:14939358-14996431:- chr10:14981868:- chr10:15783101,chr10:15783104 chr10:14940833,chr10:14940833 NA NA chr10:15825100,chr10:15825103 chr10:14982832,chr10:14982832 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MINDY-3_4_CD|29-301|2.1e-55^EF-hand_7|306-357|3e-07^EF-hand_6|308-335|9.6e-05^MINDY-3_4_CD|378-437|0.0001 DRMBL-PARTIAL|~247-343|2.7e-25^Lactamase_B_2|593-608|1.8 ["CCLE_StarF2019"] 9 7 9 6.75 ONLY_REF_SPLICE YES_LDAS 0.1841 GT 1.7232 AG 1.7056 ENST00000277632.8 1-1116 ENST00000697070.1 247-2178 chr10|-|[2]15786561-15786648[2]|[1]15789247-15789319[1]|[0]15796100-15796172[0]|[2]15816835-15816915[0]|[2]15821656-15821726[1]|[0]15833630-15833709[2]|[1]15834543-15834616[0]|[2]15837204-15837318[2]|[1]15838228-15838279[1]|[0]15841426-15841599[1]|[0]15843212-15843272[0]|[2]15847864-15847943[1]|[0]15860206-15860299[0]<==>chr10|-|[2]14899164-14899312[1]|[0]14908458-14909330[1]|[0]14919738-14919832[2]|[1]14922981-14923069[0]|[2]14926843-14926897[2]|[1]14928016-14928152[0]|[2]14932854-14932955[0]|[2]14934380-14934520[0]|[2]14934703-14934775[2]|[1]14935463-14935564[2]|[1]14936538-14936593[0]|[2]14939810-14939869[0] atgtccgaactgactaaagagctgatggagctggtgtggggcaccaagagcagccccggtctctcggacaccattttctgccgctggacgcaagggtttgtgtttagtgaatcagagggatctgcattagaacagtttgaaggtggcccctgtgctgttattgcacctgttcaggcatttcttttgaagaagctcctgttttcttcggagaagtcttcttggcgggattgttcagaggaagagcagaaggaactcctttgtcataccttgtgtgatattttagaaagtgcttgttgtgaccactctggatcatactgcttggtttcatggttaagaggaaagacaactgaggaaactgctagtatttctgggagtcctgcagagtctagttgccaagtggaacattcttctgccttggctgtcgaagagcttggctttgagcgatttcatgcattaattcaaaaaagatcgttcagaagtttaccagaattaaaagatgctgtcttggaccagtattcaatgtggggaaataaatttggagtattgctttttctgtattctgtattactgacaaagggcattgaaaacataaaaaacgaaattgaagatgcaagtgaacccttgatagatcctgtatatggacatggcagccaaagtttaattaatctcctgctgacgggacatgctgtttctaatgtatgggatggtgatagagagtgctcaggaatgaaacttcttggtatacatgaacaagcagcagtaggatttttaacactaatggaagctttaagatactgtaaggttggttcttacttgaaatctccaaaattccctatttggattgttggcagtgagactcacctcaccgtattttttgccaaggatatggctttagttgcccctgaagctccttcagaacaagccagaagagtttttcaaacctacgacccagaagataatggattcatacccgattcacttctggaagatgtgatgaaagcattggaccttgtttcagatcctgaatatataaatctcatgaagaataaattagatccagaaggattaggaatcatattattgggcccatttcttcaagaattttttcctgatcagATATCTATTGAAATCGAGACTCCTACCCAGATATCTTTAGTGGATGAAGCATCAGGAGAGAAGGAAGAGATTGTTGTGACTCTCTTACCAGCTGGTCACTGTCCGGGATCAGTTATGTTTTTATTTCAGGGCAATAATGGAACTGTCCTGTACACAGGAGACTTCAGATTGGCGCAAGGAGAAGCTGCTAGAATGGAGCTTCTGCACTCCGGGGGCAGAGTCAAAGACATCCAAAGTGTATATTTGGATACTACGTTCTGTGATCCAAGATTTTACCAAATTCCAAGTCGGGAGGAGTGTTTAAGTGGAGTCTTAGAGCTGGTCCGAAGCTGGATCACTCGGAGCCCGTACCATGTTGTGTGGCTGAACTGCAAAGCGGCTTATGGCTATGAATATCTGTTCACCAACCTTAGTGAAGAATTAGGAGTCCAGGTTCATGTGAATAAGCTAGACATGTTTAGGAACATGCCTGAGATCCTTCATCATCTCACAACAGACCGCAACACTCAGATCCATGCATGCCGGCATCCCAAGGCAGAGGAATATTTTCAGTGGAGCAAATTACCCTGTGGAATTACTTCCAGAAATAGAATTCCACTCCACATAATCAGCATTAAGCCATCCACCATGTGGTTTGGAGAAAGGAGCAGAAAAACAAATGTAATTGTGAGGACTGGAGAGAGTTCATACAGAGCTTGTTTTTCTTTTCACTCCTCCTACAGTGAGATTAAAGATTTCTTGAGCTACCTCTGTCCTGTGAACGCATATCCAAATGTCATTCCAGTTGGCACAACTATGGATAAAGTTGTCGAAATCTTAAAGCCTTTATGCCGGTCTTCCCAAAGTACGGAGCCAAAGTATAAACCACTGGGAAAACTGAAGAGAGCTAGAACAGTTCACCGAGACTCAGAGGAGGAAGATGACTATCTCTTTGATGATCCTCTGCCAATACCTTTAAGGCACAAAGTTCCATACCCGGAAACTTTTCACCCTGAGGTATTTTCAATGACTGCAGTATCAGAAAAGCAGCCTGAAAAACTGAGACAAACCCCAGGATGCTGCAGAGCAGAGTGTATGCAGAGCTCTCGTTTCACAAACTTTGTAGATTGTGAAGAATCCAACAGTGAAAGTGAAGAAGAAGTAGGAATCCCAGCTTCACTGCAAGGAGATCTGGGCTCTGTACTTCACCTGCAAAAGGCTGATGGGGATGTACCCCAGTGGGAAGTATTCTTTAAAAGAAATGATGAAATCACAGATGAGAGTTTGGAAAACTTCCCTTCCTCCACAGTGGCAGGGGGATCTCAGTCACCAAAGCTTTTCAGTGACTCTGATGGAGAATCAACTCACATCTCCTCCCAGAATTCTTCCCAGTCAACACACATAACAGAACAAGGAAGTCAAGGCTGGGACAGCCAATCTGATACTGTTTTGTTATCTTCCCAAGAGAGAAACAGTGGGGATATTACTTCCTTGGACAAAGCTGACTACAGACCAACAATCAAAGAGAATATTCCTGCCTCTCTCATGGAACAAAATGTAATTTGCCCAAAGGATACTTACTCTGATTTGAAAAGCAGAGATAAAGATGTGACAATAGTTCCTAGTACTGGAGAACCAACTACTCTAAGCAGTGAGACACATATACCCGAGGAAAAAAGTTTGCTAAATCTTAGCACAAATGCAGATTCCCAGAGCTCTTCTGATTTTGAAGTTCCCTCAACTCCAGAAGCTGAGTTACCTAAACGAGAGCATTTACAATATTTATATGAGAAGCTGGCAACTGGGTCTCACTCTGTCACTCAGGCTAGAATGCGGTGGTGCCATCATGACTCCCTGTATCCTTTAACTCCTGGGATCAAGCGATCTTCCTGCCTCAGCCTCCTGACTAGCTGGATCACAGGTGCATACCGCCATGCCCAGCTAATGATTTAG MSELTKELMELVWGTKSSPGLSDTIFCRWTQGFVFSESEGSALEQFEGGPCAVIAPVQAFLLKKLLFSSEKSSWRDCSEEEQKELLCHTLCDILESACCDHSGSYCLVSWLRGKTTEETASISGSPAESSCQVEHSSALAVEELGFERFHALIQKRSFRSLPELKDAVLDQYSMWGNKFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDPVYGHGSQSLINLLLTGHAVSNVWDGDRECSGMKLLGIHEQAAVGFLTLMEALRYCKVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAPEAPSEQARRVFQTYDPEDNGFIPDSLLEDVMKALDLVSDPEYINLMKNKLDPEGLGIILLGPFLQEFFPDQISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFTNLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPKAEEYFQWSKLPCGITSRNRIPLHIISIKPSTMWFGERSRKTNVIVRTGESSYRACFSFHSSYSEIKDFLSYLCPVNAYPNVIPVGTTMDKVVEILKPLCRSSQSTEPKYKPLGKLKRARTVHRDSEEEDDYLFDDPLPIPLRHKVPYPETFHPEVFSMTAVSEKQPEKLRQTPGCCRAECMQSSRFTNFVDCEESNSESEEEVGIPASLQGDLGSVLHLQKADGDVPQWEVFFKRNDEITDESLENFPSSTVAGGSQSPKLFSDSDGESTHISSQNSSQSTHITEQGSQGWDSQSDTVLLSSQERNSGDITSLDKADYRPTIKENIPASLMEQNVICPKDTYSDLKSRDKDVTIVPSTGEPTTLSSETHIPEEKSLLNLSTNADSQSSSDFEVPSTPEAELPKREHLQYLYEKLATGSHSVTQARMRWCHHDSLYPLTPGIKRSSCLSLLTSWITGAYRHAQLMI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28496 ENSG00000236760::EIPR1 ENSG00000236760.1::ENSG00000032389.13 DU4475 SRR8615297 SRR8639149 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 207 FALSE NA FALSE NA ENSG00000236760 ENSG00000236760.1 lncRNA - - chr2:3131581-3145780:- chr2:3145547:- chr2:3135353-3149551:- chr2:3149318:- EIPR1 ENSG00000032389.13 protein_coding - - chr2:3188925-3377830:- chr2:3257455:- chr2:3192696-3381601:- chr2:3261226:- chr2:3134706 chr2:3307271 NA NA chr2:3138478 chr2:3311042 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 3 8 3 5.96 ONLY_REF_SPLICE YES_LDAS 0.1048 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28498 UBE2L3::KRAS ENSG00000185651.16::ENSG00000133703.14 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21611043:+ chr22:21903736-21978323:+ chr22:21965332:+ KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25245395:- chr12:25358180-25403870:- chr12:25398329:- chr22:21617715,chr22:21617715,chr22:21617715,chr22:21617715 chr12:25248666,chr12:25248679,chr12:25248698,chr12:25248734 NA NA chr22:21972004,chr22:21972004,chr22:21972004,chr22:21972004 chr12:25401600,chr12:25401613,chr12:25401632,chr12:25401668 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["KRAS:FoundationOne_panel","KRAS:OncocartaV1_panel","KRAS:Oncogene","KRAS:OncomapV4_panel","KRAS:ArcherDX_panel"];["ChimerKB","Klijn_CellLines","ChimerPub","DepMap2023","Cosmic","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr12] 174 96 173.93 95.32 ONLY_REF_SPLICE YES_LDAS 4.2245 GT 1.4295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense 28500 CASP7::PLEKHS1 ENSG00000165806.21::ENSG00000148735.16 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis star-fusion TRUE TRUE TRUE 211 TRUE 408 TRUE 147 CASP7 ENSG00000165806.21 protein_coding + + chr10:113679162-113730907:+ chr10:113679978:+ chr10:115438921-115490666:+ chr10:115439737:+ PLEKHS1 ENSG00000148735.16 protein_coding + + chr10:113751262-113783429:+ chr10:113780602:+ chr10:115511021-115543188:+ chr10:115540361:+ chr10:113685476,chr10:113685457,chr10:113685474 chr10:113779927,chr10:113779918,chr10:113779925 NA NA chr10:115445235,chr10:115445216,chr10:115445233 chr10:115539686,chr10:115539677,chr10:115539684 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PRIMA1|17-50|0.00011^NAD_binding_6|119-170|0.17^EZH2_N|122-146|8.2e-05^Peptidase_C14-PARTIAL|153-224~|6e-78 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.02Mb];NEIGHBORS[20547] 15 12 15 8.65 ONLY_REF_SPLICE YES_LDAS 0.371 GT 1.7819 AG 1.7465 ENST00000369321.6 1-224 ENST00000694986.1 1228-1407 chr10|+|[0]113679755-113679978[1]<==>chr10|+|[0]113780602-113780781[2] atgcgtgcggggacacgggtcgctttgggctcttccacccctgcggagcgcactaccccgagccaggggcggtgcaagccccgcccggccctacccagggcggctcctccctccgcagcgccgagacttttagtttcgctttcgctaaaggggccccagacccttgctgcggagcgacggagagagactgtgccagtcccagccgccctaccgccgtgggaacgAAATTAAAGCTTACCATCGGCAGGATCCCAAATTCAGAGACATTCCATGCTGCATCCTGTATGTGTCCCTCAAAATGCCAAAGTGCTGCACCTTCTCAGCTGGATAAGCCTAGACTGAACAGAGCTCCCAAGAGGAGTCCGGCCATTAAAAAGAGCCAGCAGAAAGGAGCCAGGGAGTAA MRAGTRVALGSSTPAERTTPSQGRCKPRPALPRAAPPSAAPRLLVSLSLKGPQTLAAERRRETVPVPAALPPWERN*SLPSAGSQIQRHSMLHPVCVPQNAKVLHLLSWISLD*TELPRGVRPLKRASRKEPGS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28504 CASP7::PLEKHS1 ENSG00000165806.21::ENSG00000148735.16 DU145 SRR8615300 SRR8639152 PROSTATE carcinoma metastasis star-fusion TRUE TRUE TRUE 212 TRUE 408 TRUE 147 CASP7 ENSG00000165806.21 protein_coding + + chr10:113679162-113730907:+ chr10:113679349:+ chr10:115438921-115490666:+ chr10:115439108:+ PLEKHS1 ENSG00000148735.16 protein_coding + + chr10:113751262-113783429:+ chr10:113780602:+ chr10:115511021-115543188:+ chr10:115540361:+ chr10:113685476,chr10:113685457,chr10:113685474 chr10:113779927,chr10:113779918,chr10:113779925 NA NA chr10:115445235,chr10:115445216,chr10:115445233 chr10:115539686,chr10:115539677,chr10:115539684 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.02Mb];NEIGHBORS[20547] 7 11 7 3.35 ONLY_REF_SPLICE YES_LDAS 0.1624 GT 1.8892 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28513 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 213 TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69788141:+ chr2:69871557-70054244:+ chr2:70015273:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73297285:- chr14:73741815-73925323:- chr14:73763993:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RNAse_A_bac|9-66|0.00027^Annexin|21-84|3.6e-29^Myb_DNA-bind_7|23-59|0.086^UBA_2|25-58|0.00023^Acetyltransf_6|35-74|0.59^TSLP-PARTIAL|52-97~|6.6e-05^Annexin-PARTIAL|92-97~|8.5e-28^UBA_2-PARTIAL|94-97~|0.53^Acetyltransf_6-PARTIAL|95-97~|0.00014 NumbF|258-338|1e-34^NumbF|383-413|0.52^NumbF|550-576|0.074 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr14] 217 64 217 61.39 ONLY_REF_SPLICE YES_LDAS 2.4099 GT 1.9329 AG 1.6402 ENST00000394295.6 1-97 ENST00000355058.7 235-1956 chr2|+|[0]69781566-69781574[2]|[0]69788054-69788141[0]<==>chr14|-|[2]73276578-73277293[1]|[0]73279281-73279424[1]|[0]73282359-73282505[1]|[0]73284081-73284374[1]|[0]73287110-73287314[0]|[2]73292734-73292874[0]|[2]73297211-73297285[0] atggccatggcaaccaaaggaggtactgtcaaagctgcttcaggattcaatgccatggaagatgcccagaccctgaggaaggccatgaaagggctcgACTGGAAAGAAAGCAGTTAAAGCAGTTCTGTGGGTCTCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAGGACCTCATAGTTGACCAGACGATAGAGAAAGTTTCTTTCTGTGCCCCAGACAGGAACTTTGATAGAGCCTTTTCTTACATATGCCGTGATGGCACCACTCGTCGCTGGATCTGTCACTGCTTCATGGCTGTCAAGGACACAGGTGAAAGGTTGAGCCATGCAGTAGGCTGTGCTTTTGCAGCCTGTTTAGAGCGCAAGCAGAAGCGGGAGAAGGAATGTGGAGTGACTGCTACTTTTGATGCTAGTCGGACCACTTTTACAAGAGAAGGATCATTCCGTGTCACAACAGCCACTGAACAAGCAGAAAGAGAGGAGATCATGAAACAAATGCAAGATGCCAAGAAAGCTGAAACAGATAAGATAGTCGTTGGTTCATCAGTTGCCCCTGGCAACACTGCCCCATCCCCATCCTCTCCCACCTCTCCTACTTCTGATGCCACGACCTCTCTGGAGATGAACAATCCTCATGCCATCCCACGCCGGCATGCTCCAATTGAACAGCTTGCTCGCCAAGGCTCTTTCCGAGGTTTTCCTGCTCTTAGCCAGAAGATGTCACCCTTTAAACGCCAACTATCCCTACGCATCAATGAGTTGCCTTCCACTATGCAGAGGAAGACTGATTTCCCCATTAAAAATGCAGTGCCAGAAGTAGAAGGGGAGGCAGAGAGCATCAGCTCCCTGTGCTCACAGATCACCAATGCCTTCAGCACACCTGAGGACCCCTTCTCATCTGCTCCGATGACCAAACCAGTGACAGTGGTGGCACCACAATCTCCTACCTTCCAAGCTAATGGCACTGACTCAGCCTTCCATGTGCTTGCTAAGCCAGCCCATACTGCTCTAGCACCCGTAGCAATGCCTGTGCGTGAAACCAACCCTTGGGCCCATGCCCCTGATGCTGCTAACAAGGAAATTGCAGCCACATGTTCGGGGACCGAGTGGGGTCAATCTTCTGGTGCTGCCTCTCCAGGTCTCTTCCAGGCCGGTCATAGACGTACTCCCTCTGAGGCCGACCGATGGTTAGAAGAGGTGTCTAAGAGCGTCCGGGCTCAGCAGCCCCAGGCCTCAGCTGCTCCTCTGCAGCCAGTTCTCCAGCCTCCTCCACCCACTGCCATCTCCCAGCCAGCATCACCTTTCCAAGGGAATGCATTCCTCACCTCTCAGCCTGTGCCAGTGGGTGTGGTCCCAGCCCTGCAACCAGCCTTTGTCCCTGCCCAGTCCTATCCTGTGGCCAATGGAATGCCCTATCCAGCCCCTAATGTGCCTGTGGTGGGCATCACTCCCTCCCAGATGGTGGCCAACGTATTTGGCACTGCAGGCCACCCTCAGGCTGCCCATCCCCATCAGTCACCCAGCCTGGTCAGGCAGCAGACATTCCCTCACTACGAGGCAAGCAGTGCTACCACCAGTCCCTTCTTTAAGCCTCCTGCTCAGCACCTCAACGGTTCTGCAGCTTTCAATGGTGTAGATGATGGCAGGTTGGCCTCAGCAGACAGGCATACAGAGGTTCCTACAGGCACCTGCCCAGTGGATCCTTTTGAAGCCCAGTGGGCTGCATTAGAAAATAAGTCCAAGCAGCGTACTAATCCCTCCCCTACCAACCCTTTCTCCAGTGACTTACAGAAGACGTTTGAAATTGAACTTTAA MAMATKGGTVKAASGFNAMEDAQTLRKAMKGLDWKESS*SSSVGLSRWTQSCG*KN*GPHS*PDDRESFFLCPRQEL**SLFLHMP*WHHSSLDLSLLHGCQGHR*KVEPCSRLCFCSLFRAQAEAGEGMWSDCYF*C*SDHFYKRRIIPCHNSH*TSRKRGDHETNARCQES*NR*DSRWFISCPWQHCPIPILSHLSYF*CHDLSGDEQSSCHPTPACSN*TACSPRLFPRFSCS*PEDVTL*TPTIPTHQ*VAFHYAEED*FPH*KCSARSRRGGREHQLPVLTDHQCLQHT*GPLLICSDDQTSDSGGTTISYLPS*WH*LSLPCAC*ASPYCSSTRSNACA*NQPLGPCP*CC*QGNCSHMFGDRVGSIFWCCLSRSLPGRS*TYSL*GRPMVRRGV*ERPGSAAPGLSCSSAASSPASSTHCHLPASITFPRECIPHLSACASGCGPSPATSLCPCPVLSCGQWNALSSP*CACGGHHSLPDGGQRIWHCRPPSGCPSPSVTQPGQAADIPSLRGKQCYHQSLL*ASCSAPQRFCSFQWCR*WQVGLSRQAYRGSYRHLPSGSF*SPVGCIRK*VQAAY*SLPYQPFLQ*LTEDV*N*TL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28514 ANXA4::NUMB ENSG00000196975.16::ENSG00000133961.21 CAL54 SRR8615315 SRR8639210 KIDNEY carcinoma (renal_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 214 TRUE 420 TRUE 150 ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69781574:+ chr2:69871557-70054244:+ chr2:70008706:+ NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73297285:- chr14:73741815-73925323:- chr14:73763993:- chr2:69795003 chr14:73300819 NA NA chr2:70022135 chr14:73767527 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none NumbF|258-338|1e-34^NumbF|383-413|0.52^NumbF|550-576|0.074 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr14] 84 11 84 2.61 ONLY_REF_SPLICE YES_LDAS 0.7497 GT 1.9656 AG 1.6402 ENST00000394295.6 1-9 ENST00000355058.7 235-1956 chr2|+|[0]69781566-69781574[2]<==>chr14|-|[2]73276578-73277293[1]|[0]73279281-73279424[1]|[0]73282359-73282505[1]|[0]73284081-73284374[1]|[0]73287110-73287314[0]|[2]73292734-73292874[0]|[2]73297211-73297285[0] atggccatgACTGGAAAGAAAGCAGTTAAAGCAGTTCTGTGGGTCTCAGCAGATGGACTCAGAGTTGTGGATGAAAAAACTAAGGACCTCATAGTTGACCAGACGATAGAGAAAGTTTCTTTCTGTGCCCCAGACAGGAACTTTGATAGAGCCTTTTCTTACATATGCCGTGATGGCACCACTCGTCGCTGGATCTGTCACTGCTTCATGGCTGTCAAGGACACAGGTGAAAGGTTGAGCCATGCAGTAGGCTGTGCTTTTGCAGCCTGTTTAGAGCGCAAGCAGAAGCGGGAGAAGGAATGTGGAGTGACTGCTACTTTTGATGCTAGTCGGACCACTTTTACAAGAGAAGGATCATTCCGTGTCACAACAGCCACTGAACAAGCAGAAAGAGAGGAGATCATGAAACAAATGCAAGATGCCAAGAAAGCTGAAACAGATAAGATAGTCGTTGGTTCATCAGTTGCCCCTGGCAACACTGCCCCATCCCCATCCTCTCCCACCTCTCCTACTTCTGATGCCACGACCTCTCTGGAGATGAACAATCCTCATGCCATCCCACGCCGGCATGCTCCAATTGAACAGCTTGCTCGCCAAGGCTCTTTCCGAGGTTTTCCTGCTCTTAGCCAGAAGATGTCACCCTTTAAACGCCAACTATCCCTACGCATCAATGAGTTGCCTTCCACTATGCAGAGGAAGACTGATTTCCCCATTAAAAATGCAGTGCCAGAAGTAGAAGGGGAGGCAGAGAGCATCAGCTCCCTGTGCTCACAGATCACCAATGCCTTCAGCACACCTGAGGACCCCTTCTCATCTGCTCCGATGACCAAACCAGTGACAGTGGTGGCACCACAATCTCCTACCTTCCAAGCTAATGGCACTGACTCAGCCTTCCATGTGCTTGCTAAGCCAGCCCATACTGCTCTAGCACCCGTAGCAATGCCTGTGCGTGAAACCAACCCTTGGGCCCATGCCCCTGATGCTGCTAACAAGGAAATTGCAGCCACATGTTCGGGGACCGAGTGGGGTCAATCTTCTGGTGCTGCCTCTCCAGGTCTCTTCCAGGCCGGTCATAGACGTACTCCCTCTGAGGCCGACCGATGGTTAGAAGAGGTGTCTAAGAGCGTCCGGGCTCAGCAGCCCCAGGCCTCAGCTGCTCCTCTGCAGCCAGTTCTCCAGCCTCCTCCACCCACTGCCATCTCCCAGCCAGCATCACCTTTCCAAGGGAATGCATTCCTCACCTCTCAGCCTGTGCCAGTGGGTGTGGTCCCAGCCCTGCAACCAGCCTTTGTCCCTGCCCAGTCCTATCCTGTGGCCAATGGAATGCCCTATCCAGCCCCTAATGTGCCTGTGGTGGGCATCACTCCCTCCCAGATGGTGGCCAACGTATTTGGCACTGCAGGCCACCCTCAGGCTGCCCATCCCCATCAGTCACCCAGCCTGGTCAGGCAGCAGACATTCCCTCACTACGAGGCAAGCAGTGCTACCACCAGTCCCTTCTTTAAGCCTCCTGCTCAGCACCTCAACGGTTCTGCAGCTTTCAATGGTGTAGATGATGGCAGGTTGGCCTCAGCAGACAGGCATACAGAGGTTCCTACAGGCACCTGCCCAGTGGATCCTTTTGAAGCCCAGTGGGCTGCATTAGAAAATAAGTCCAAGCAGCGTACTAATCCCTCCCCTACCAACCCTTTCTCCAGTGACTTACAGAAGACGTTTGAAATTGAACTTTAA MAMTGKKAVKAVLWVSADGLRVVDEKTKDLIVDQTIEKVSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHAVGCAFAACLERKQKREKECGVTATFDASRTTFTREGSFRVTTATEQAEREEIMKQMQDAKKAETDKIVVGSSVAPGNTAPSPSSPTSPTSDATTSLEMNNPHAIPRRHAPIEQLARQGSFRGFPALSQKMSPFKRQLSLRINELPSTMQRKTDFPIKNAVPEVEGEAESISSLCSQITNAFSTPEDPFSSAPMTKPVTVVAPQSPTFQANGTDSAFHVLAKPAHTALAPVAMPVRETNPWAHAPDAANKEIAATCSGTEWGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKSVRAQQPQASAAPLQPVLQPPPPTAISQPASPFQGNAFLTSQPVPVGVVPALQPAFVPAQSYPVANGMPYPAPNVPVVGITPSQMVANVFGTAGHPQAAHPHQSPSLVRQQTFPHYEASSATTSPFFKPPAQHLNGSAAFNGVDDGRLASADRHTEVPTGTCPVDPFEAQWAALENKSKQRTNPSPTNPFSSDLQKTFEIEL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28535 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 217 TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22429014:+ chr1:22755331-22857650:+ chr1:22755507:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325360:+ chr1:35734310-35887659:+ chr1:35790961:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:12.74Mb] 78 19 78 14.39 ONLY_REF_SPLICE YES_LDAS 0.9301 GT 1.8892 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28539 PARD3::CUL2 ENSG00000148498.17::ENSG00000108094.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA PARD3 ENSG00000148498.17 protein_coding - - chr10:34109560-34815325:- chr10:34814876:- chr10:34398488-35104253:- chr10:35103804:- CUL2 ENSG00000108094.17 protein_coding - - chr10:35008504-35127006:- chr10:35101060:- chr10:35297432-35415934:- chr10:35389988:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019"];INTRACHROMOSOMAL[chr10:0.19Mb] 26 6 26 6 ONLY_REF_SPLICE YES_LDAS 0.3221 GT 1.8256 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-3611 chr10:35079598-35079680:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Bladder Urothelial Carcinoma,Breast invasive carcinoma BLADDER,BREAST no_match 34985246,34985246 FALSE,FALSE 35360267,35305322 FALSE,FALSE YES,YES CDS-5UTR,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28540 SLC30A7::UROC1 ENSG00000162695.12::ENSG00000159650.9 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 219 FALSE NA FALSE NA SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100921841:+ chr1:101361632-101447313:+ chr1:101387397:+ UROC1 ENSG00000159650.9 protein_coding - - chr3:126481166-126517773:- chr3:126496108:- chr3:126200009-126236616:- chr3:126214951:- chr1:100961233,chr1:100961248,chr1:100961250,chr1:100961272 chr3:126498099,chr3:126498099,chr3:126498099,chr3:126498099 NA NA chr1:101426789,chr1:101426804,chr1:101426806,chr1:101426828 chr3:126216942,chr3:126216942,chr3:126216942,chr3:126216942 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cation_efflux|38-294|9.7e-49 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr3] 25 22 25 22 ONLY_REF_SPLICE YES_LDAS 0.4732 GT 1.7465 AG 1.7819 ENST00000370112.8 1-842 ENST00000290868.7 1439-2031 chr1|+|[0]100896263-100896342[1]|[2]100896570-100896671[1]|[2]100906852-100906965[1]|[2]100911063-100911150[2]|[0]100912112-100912238[0]|[1]100913663-100913806[0]|[1]100918077-100918127[0]|[1]100921706-100921841[1]<==>chr3|-|[2]126482345-126482485[0]|[2]126483369-126483468[2]|[1]126488198-126488279[1]|[0]126489276-126489375[0]|[2]126492418-126492516[0]|[2]126496038-126496108[1] atgttgcccctgtccatcaaagacgatgaatacaaaccacccaagttcaatttgttcggcaagatctcgggctggtttaggtctatactgtccgacaagacttcccggaacctgtttttcttcctgtgcctgaacctctctttcgcttttgtggaactactctacggcatctggagcaactgcttaggcttgatttccgactcttttcacatgtttttcgatagcactgccattttggctggactggcagcttctgttatttcaaaatggagagataatgatgctttctcctatgggtatgttagagcggaagttctggctggctttgtcaatggcctatttttgatcttcactgctttttttattttctcagaaggagttgagagagcattagcccctccagatgtccaccatgagagactgcttcttgtttccattcttgggtttgtggtaaacctaataggaatatttgttttcaaacatggaggtcatggacattctcatggctctggccacggacacagtcattccctctttaatggtgctctagatcaggcacatggccatgtcgatcattgccatagccatgaagtgaaacatggtgctgcacatagccatgatcatgctcatggacatggacactttcattctcatgatggcccgtccttaaaagaaacaacaggacccagcagacagattttacaaggtgtatttttacatatcctagcagatacacttggaagtattggtgtaattgcttctgccatcatgatgcaaaattttggtctgatgatagcagatcctatctgttcaattcttatagccattcttatagttgtaagTGAAGGTGTCTGTGAAGCTGCAGTACATGGACAACATCCGCTGGATCCGGGAGGCCGCCAGGCACCGGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAGGGCCGCGTGGCCATCGCTGTGGCCATTAACCAGGCCATCGCCTGCAGGAGGATCAAGGCGCCGGTGGTCCTGAGCCGAGATCACCATGACGTGAGCGGCACCGACAGCCCCTTTAGGGAGACCTCCAACATTTACGACGGCTCTGCCTTCTGTGCAGACATGGCTGTGCAGAACTTCGTGGGAGATGCCTGTCGCGGAGCCACCTGGGTCGCCCTTCACAACGGAGGGGGCGTGGGCTGGGGTGAGGTGATCAACGGGGGATTCGGCCTCGTGCTGGACGGTACCCCGGAGGCCGAGGGGAGAGCCAGGCTGATGCTCAGCTGGGATGTCTCCAATGGTGTGGCCCGGCGCTGCTGGTCAGGGAACCAGAAGGCCTATGAGATCATCTGCCAGACCATGCAGGAGAACAGCACCTTGGTGGTGACACTGCCTCACAAGGTGGAGGACGAGCGGGTGCTCCAGCAGGCCCTGCAGCTCTGA MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFHMFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHERLLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFNGALDQAHGHVDHCHSHEVKHGAAHSHDHAHGHGHFHSHDGPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVVSEGVCEAAVHGQHPLDPGGRQAPAGGGLPGKDPVLRPEGPRGHRCGH*PGHRLQEDQGAGGPEPRSP*RERHRQPL*GDLQHLRRLCLLCRHGCAELRGRCLSRSHLGRPSQRRGRGLG*GDQRGIRPRAGRYPGGRGESQADAQLGCLQWCGPALLVREPEGL*DHLPDHAGEQHLGGDTASQGGGRAGAPAGPAAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28543 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 220 TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38379342:+ chr3:38388251-38462839:+ chr3:38420833:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37361243:+ chr3:37284682-37408370:+ chr3:37402734:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FGGY_N|11-108|0.00013^FGGY_C|72-91|0.97^FGGY_N|132-287|3.7e-16^FGGY_C|296-479|2.7e-21 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.98Mb] 18 28 18 18.24 ONLY_REF_SPLICE YES_LDAS 0.3648 GT 1.9656 AG 1.7056 ENST00000207870.8 1-1291 ENST00000699995.1 6730-6759 chr3|+|[0]38346869-38346925[2]|[0]38348550-38348632[1]|[2]38360339-38360408[2]|[0]38362937-38363017[2]|[0]38365199-38365285[2]|[0]38365608-38365736[2]|[0]38366808-38366873[2]|[0]38368185-38368257[0]|[1]38370056-38370174[2]|[0]38372655-38372736[0]|[1]38374462-38374502[2]|[0]38375144-38375259[1]|[2]38376117-38376232[0]|[1]38376918-38376991[2]|[0]38379246-38379342[0]<==>chr3|+|[0]37361243-37361272[2] atggcggagcacgcccctcgccgctgctgcctgggctgggacttcagcacgcagcaggtaaaggttgttgctgttgatgcagagttgaatgtcttctatgaggaaagtgtgcattttgacagagatcttccagaatttgggactcagggtggtgttcatgtgcacaaggatgggctgacggtcacttctccagtactaatgtgggtccaggcactggatatcatcttggagaagatgaaggcttcgggcttcgacttctctcaagtcctagccttgtccggggcgggccagcaacacggaagtatatactggaaggctggagcccagcaggcactgacaagcttatcaccagacctccggctacaccagcagctgcaggactgtttctccatcagcgactgcccggtgtggatggactccagcaccacagcccagtgccgccagctggaggctgctgtgggtggtgctcaggctctcagctgcctcacggggtcccgtgcctatgagcgttttacagggaaccaaattgcaaaaatttaccagcagaaccccgaggcctactcacatacggagagaatttctttggtcagtagctttgctgcttccctgttccttggctcttactcccctattgactacagtgatggttctggaatgaatttgttgcagatacaggataaagtctggtcccaggcttgccttggtgcctgtgcacctcatttagaggagaagcttagcccaccagtaccatcatgctcagttgtgggagccatttcttcctactacgtccagcgctacggatttcctccaggatgcaaagtggtggccttcactggggacaacccagcgtcgctggcaggcatgagactggaggaaggtgacattgcggtcagcctgggcaccagtgacaccctgtttctctggctccaagagcccatgcctgccctggaaggccacatcttctgcaacccggttgactcccagcactacatggcactcctgtgctttaaaaatggctccctcatgagagagaagatccgcaacgagtctgtatcccgttcctggagcgatttctctaaggcactgcagtccacagagatgggcaacggtggaaacctgggtttttattttgatgtaatggagatcacccctgaaattattggacgtcataggtttaacacagaaaaccacaaggttgcagcattccctggggatgtggaggttcgagcactaattgaaggacaattcatggccaagaggattcacgcagaaggcctgggctatcgagtcaTTTACTTCACCTCGCAGTGGTATCTTCTGA MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVIYFTSQWYLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28544 CLASP1::NRCAM ENSG00000074054.21::ENSG00000091129.22 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CLASP1 ENSG00000074054.21 protein_coding - - chr2:121337776-121649476:- chr2:121605701:- chr2:122095352-122407052:- chr2:122363277:- NRCAM ENSG00000091129.22 protein_coding - - chr7:108147623-108456717:- chr7:108312731:- chr7:107788068-108097161:- chr7:107953175:- chr2:121567977,chr2:121567980 chr7:108378519,chr7:108378519 NA NA chr2:122325553,chr2:122325556 chr7:108018963,chr7:108018963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NRCAM:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr7] 17 20 17 20 ONLY_REF_SPLICE YES_LDAS 0.3724 GT 1.8892 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28545 ENSG00000267052::SLC26A3 ENSG00000267052.3::ENSG00000091138.13 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 222 TRUE 435 TRUE 155 ENSG00000267052 ENSG00000267052.3 lncRNA - - chr7:106569876-106598908:- chr7:106591550:- chr7:106210322-106239354:- chr7:106231996:- SLC26A3 ENSG00000091138.13 protein_coding - - chr7:107765467-107803225:- chr7:107779763:- chr7:107405912-107443670:- chr7:107420208:- chr7:106583354,chr7:106583356 chr7:107780153,chr7:107780152 NA NA chr7:106223800,chr7:106223802 chr7:107420598,chr7:107420597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 10 16 8.97 ONLY_REF_SPLICE YES_LDAS 0.2514 GT 1.8256 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28546 DGCR2::WARS2-AS1 ENSG00000070413.20::ENSG00000231365.7 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DGCR2 ENSG00000070413.20 protein_coding - - chr22:19036282-19122454:- chr22:19122128:- chr22:19023795-19109967:- chr22:19109641:- WARS2-AS1 ENSG00000231365.7 lncRNA + + chr1:119140391-119275973:+ chr1:119178644:+ chr1:119683014-119818596:+ chr1:119721267:+ chr22:19105030 chr1:119175678 NA NA chr22:19092543 chr1:119718301 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 11 16 11 ONLY_REF_SPLICE YES_LDAS 0.2718 GT 1.7056 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28548 LPAR1::SUSD1 ENSG00000198121.15::ENSG00000106868.17 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 226 FALSE NA FALSE NA LPAR1 ENSG00000198121.15 protein_coding - - chr9:110873263-111038470:- chr9:111038167:- chr9:113635543-113800750:- chr9:113800447:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112052438:- chr9:114803063-114937577:- chr9:114814718:- chr9:111037324,chr9:111037326 chr9:112056426,chr9:112056425 NA NA chr9:113799604,chr9:113799606 chr9:114818706,chr9:114818705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["LPAR1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:1.00Mb] 15 0 15 0 ONLY_REF_SPLICE YES_LDAS 0.151 GT 1.5058 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28550 ENSG00000267052::SLC26A3 ENSG00000267052.3::ENSG00000091138.13 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 223 TRUE 435 TRUE 155 ENSG00000267052 ENSG00000267052.3 lncRNA - - chr7:106569876-106598908:- chr7:106598754:- chr7:106210322-106239354:- chr7:106239200:- SLC26A3 ENSG00000091138.13 protein_coding - - chr7:107765467-107803225:- chr7:107779763:- chr7:107405912-107443670:- chr7:107420208:- chr7:106583354,chr7:106583356 chr7:107780153,chr7:107780152 NA NA chr7:106223800,chr7:106223802 chr7:107420598,chr7:107420597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 3 12 1.03 ONLY_REF_SPLICE YES_LDAS 0.1312 GT 1.8256 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28552 XYLB::GOLGA4 ENSG00000093217.11::ENSG00000144674.19 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 221 TRUE 432 TRUE 152 XYLB ENSG00000093217.11 protein_coding + + chr3:38346760-38421348:+ chr3:38379342:+ chr3:38388251-38462839:+ chr3:38420833:+ GOLGA4 ENSG00000144674.19 protein_coding + + chr3:37243191-37366879:+ chr3:37366080:+ chr3:37284682-37408370:+ chr3:37407571:+ chr3:38386862 chr3:37357654 NA NA chr3:38428353 chr3:37399145 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FGGY_N|11-108|0.00013^FGGY_C|72-91|0.97^FGGY_N|132-287|3.7e-16^FGGY_C|296-479|2.7e-21 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.98Mb] 12 22 12 6.4 ONLY_REF_SPLICE YES_LDAS 0.1852 GT 1.9656 AG 1.9086 ENST00000207870.8 1-1291 ENST00000356847.8 6709-6732 chr3|+|[0]38346869-38346925[2]|[0]38348550-38348632[1]|[2]38360339-38360408[2]|[0]38362937-38363017[2]|[0]38365199-38365285[2]|[0]38365608-38365736[2]|[0]38366808-38366873[2]|[0]38368185-38368257[0]|[1]38370056-38370174[2]|[0]38372655-38372736[0]|[1]38374462-38374502[2]|[0]38375144-38375259[1]|[2]38376117-38376232[0]|[1]38376918-38376991[2]|[0]38379246-38379342[0]<==>chr3|+|[0]37366080-37366103[2] atggcggagcacgcccctcgccgctgctgcctgggctgggacttcagcacgcagcaggtaaaggttgttgctgttgatgcagagttgaatgtcttctatgaggaaagtgtgcattttgacagagatcttccagaatttgggactcagggtggtgttcatgtgcacaaggatgggctgacggtcacttctccagtactaatgtgggtccaggcactggatatcatcttggagaagatgaaggcttcgggcttcgacttctctcaagtcctagccttgtccggggcgggccagcaacacggaagtatatactggaaggctggagcccagcaggcactgacaagcttatcaccagacctccggctacaccagcagctgcaggactgtttctccatcagcgactgcccggtgtggatggactccagcaccacagcccagtgccgccagctggaggctgctgtgggtggtgctcaggctctcagctgcctcacggggtcccgtgcctatgagcgttttacagggaaccaaattgcaaaaatttaccagcagaaccccgaggcctactcacatacggagagaatttctttggtcagtagctttgctgcttccctgttccttggctcttactcccctattgactacagtgatggttctggaatgaatttgttgcagatacaggataaagtctggtcccaggcttgccttggtgcctgtgcacctcatttagaggagaagcttagcccaccagtaccatcatgctcagttgtgggagccatttcttcctactacgtccagcgctacggatttcctccaggatgcaaagtggtggccttcactggggacaacccagcgtcgctggcaggcatgagactggaggaaggtgacattgcggtcagcctgggcaccagtgacaccctgtttctctggctccaagagcccatgcctgccctggaaggccacatcttctgcaacccggttgactcccagcactacatggcactcctgtgctttaaaaatggctccctcatgagagagaagatccgcaacgagtctgtatcccgttcctggagcgatttctctaaggcactgcagtccacagagatgggcaacggtggaaacctgggtttttattttgatgtaatggagatcacccctgaaattattggacgtcataggtttaacacagaaaaccacaaggttgcagcattccctggggatgtggaggttcgagcactaattgaaggacaattcatggccaagaggattcacgcagaaggcctgggctatcgagtcaTCATGGCTCCGATCTTCATCTTGA MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVIMAPIFIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28553 BIRC6::ITGA9 ENSG00000115760.16::ENSG00000144668.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 225 FALSE NA FALSE NA BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32448928:+ chr2:32582091-32844638:+ chr2:32673996:+ ITGA9 ENSG00000144668.12 protein_coding + + chr3:37452115-37823507:+ chr3:37526026:+ chr3:37493606-37864998:+ chr3:37567517:+ chr2:32453219,chr2:32453218 chr3:37524512,chr3:37524508 NA NA chr2:32678287,chr2:32678286 chr3:37566003,chr3:37565999 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BIR|289-359|2.3e-24^BIRC6|3443-3598|4e-91^UQ_con-PARTIAL|4561-4618~|4.9e-29^UEV-PARTIAL|4571-4618~|6e-08^RWD-PARTIAL|4601-4618~|8.2e-05 none ["BIRC6:Oncogene"];["ITGA9:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr3] 12 16 12 13.91 ONLY_REF_SPLICE YES_LDAS 0.2608 GT 1.9656 AG 1.9086 ENST00000700519.1 1-4618 ENST00000264741.10 1328-3108 chr2|+|[0]32357162-32357486[0]|[1]32377588-32377769[2]|[0]32380153-32380290[2]|[0]32388750-32388943[1]|[2]32392039-32392150[2]|[0]32395511-32395593[1]|[2]32401163-32401385[2]|[0]32401463-32401623[1]|[2]32406499-32406557[0]|[1]32414769-32416163[0]|[1]32429146-32429295[0]|[1]32430865-32431090[1]|[2]32433644-32433804[0]|[1]32435496-32435585[0]|[1]32436053-32436184[0]|[1]32439508-32439686[2]|[0]32441329-32441462[1]|[2]32442065-32442226[1]|[2]32442324-32442455[1]|[2]32443491-32443588[0]|[1]32445521-32445668[1]|[2]32448795-32448928[0]<==>chr3|+|[1]37526026-37526071[1]|[2]37533314-37533468[0]|[1]37542425-37542585[2]|[0]37629187-37629336[2]|[0]37653714-37653790[1]|[2]37683865-37684015[2]|[0]37732712-37732798[2]|[0]37736904-37736983[1]|[2]37741730-37741819[1]|[2]37743926-37744034[2]|[0]37750462-37750569[2]|[0]37777392-37777517[2]|[0]37779902-37780021[2]|[0]37784977-37785078[2]|[0]37803823-37803942[2]|[0]37818891-37818989[2] atggtgactggtggtggtgctgcacctcccgggactgtcactgagccgcttcccagtgtgattgtgctgagcgcaggccggaagatggcggctgcggctgcggcggcctcgggccccggctgctcctcggcggcgggggcgggggcggccggggtctcagagtggctggtgctgcgggacggctgcatgcactgcgacgccgacgggctgcacagcctgtcctaccaccctgcgctcaacgccatcctggccgtcactagccgcgggaccatcaaagtcatcgacggcacctcgggggccacactgcaggcctccgcgctcagtgctaaaccaggtggacaggtgaaatgtcagtatatctctgctgtggataaagttatatttgtggatgattatgcagtagggtgtaggaaggaccttaatggaatcttgttgttagacactgctctgcaaactccagtttcaaagcaggatgatgtggttcagcttgaattacccgttacagaggcacagcagctcttatcagcatgtttagaaaaggtagatatttctagtacagagggttatgatttgttcatcacacagctcaaagatggtttaaaaaatacatctcatgagactgcagcaaaccacaaagttgctaagtgggccacagttacatttcatcttcctcatcatgtgttgaagtccattgccagtgccattgtaaatgaactcaagaaaataaatcaaaatgttgctgccttacctgtggcgtcctcagtgatggacagattgtcttacctcttacctagtgcacgtccagaactcggagtggggccaggccgttctgtagacagatcactgatgtatagtgaagctaacagacgggagacatttacctcatggcctcatgtaggctataggtgggcacaaccagatcccatggctcaagctggattttatcatcagcctgcctcatctggagatgatagagccatgtgttttacttgtagtgtatgcctcgtttgttgggaacctactgatgaaccttggtctgaacacgaaagacattccccaaactgcccatttgtgaaaggtgagcacacacagaatgtgccattgtcagtcactcttgcaacaagtcctgcacagtttccttgtacggatggaactgacagaatatcttgctttgggtcggggagctgccctcattttctagctgctgcaactaaacgaggaaagatctgcatatgggatgtttccaaacttatgaaggtgcacttaaagtttgaaattaatgcctatgatccagcaattgtacaacagcttattctatcaggagacccaagctcaggagttgattcaaggagaccaactttggcgtggctggaggactcctctagttgctcagatataccaaaattggaaggagatagtgatgatttactggaggattcagacagtgaagagcattccagatcagattctgtgacagggcatacatcacagaaggaagccatggaagtaagccttgatataacagcactcagcattctccaacagccagaaaaacttcagtgggagattgttgcaaatgtgcttgaagatactgttaaggatcttgaagaacttggggcaaatccttgtttaacaaactctaagagtgaaaagacaaaggaaaagcaccaggagcaacacaacattccttttccatgtttattagctggaggtttattaacatataaatctcctgctacctcacccattagtagtaattctcacaggtcactggatggtttaagcagaactcagggtgaaagtatatcagaacaagggtcaactgacaatgaatcctgcactaattcagaactaaattctcctctggtaaggaggactttaccggttttgcttctttatagcatcaaggaatctgatgagaaagcaggaaagatcttttcacagatgaacaatattatgagtaaaagtttgcatgatgatggttttactgttccacagattattgaaatggagctggatagtcaggagcagttgttattgcaggatcctcctgtgacttacattcagcaatttgcagatgcagcagccaaccttacctctccggattctgagaagtggaactctgtgtttcccaagcctgggactttggttcagtgcttgaggctgccaaagtttgcagaggaggagaatctttgtatagactcaataactccttgtgctgacggaattcatttgttggtaggactgcggacatgccctgttgaatccttgagtgcaataaatcaagtagaggccttgaataatttaaataaattaaactctgcactatgtaatagacggaaaggtgagctggaatcaaatcttgctgtagtgaatggtgcaaatattagtgtaatccaacatgaatcaccagcagatgtacagactcctttaataattcagcctgagcagaggaatgttagtggtggatatttagtgctttataaaatgaattatgccactcggatagtgactttagaagaggagccaataaaaatacaacatatcaaagatccccaggacacaattacctcgctcattttgcttccacccgatatattggataatcgagaggatgactgtgaggaacctattgaggacatgcagttaacctcaaagaatggttttgagagagaaaaaacgtctgacatttctactcttggacacctggtaataaccactcagggaggatatgtaaaaatactagatctttcaaactttgaaattttggccaaagtggagcctcccaaaaaggagggcactgaggaacaggacacatttgtttctgtgatttactgttctggcacagacaggctgtgtgcatgcaccaaaggtggtgagcttcattttctccaaattggaggaacctgtgatgatattgatgaagctgatatactagtggatggatctctttctaaaggaatagaaccatcttcagaaggttccaaacctttatcaaatccttcaagtcctggcatttcaggagttgatttattggtggaccagccattcacccttgaaatcttgacatccctagtggagctaacccgctttgagactttgactccaaggttttcagcgactgttcctccatgctgggtagaagttcaacaagaacagcagcaaaggaggcatcctcaacatttgcatcagcaacaccatggtgatgctgctcagcatactcgaacttggaaactacagaccgacagcaacagctgggatgaacatgtatttgaattagtactacctaaagcttgtatggttggacatgtggacttcaaattcgttttgaactcaaacatcaccaatattccacagatacaagtgacactgctgaaaaataaagctccaggattagggaaagtcaatgctcttaacattgaagtggaacaaaatgggaaaccgtccctggttgatttgaatgaagaaatgcagcacatggatgtagaggaatcacagtgtcttagattatgtccatttttggaggatcataaagaagacattctatgtgggccagtatggcttgctagtggccttgatctatcagggcatgctggaatgttgacgttaacaagccccaaacttgttaaaggtatggcaggaggaaaatatcgttcgtttttaatccatgtcaaggcagtgaatgaaagaggaacagaagagatttgtaatggtggtatgcgtcctgtagtaaggcttccatccctaaaacaccagagtaacaagggttattcacttgcttcacttttggctaaagttgcagcaggcaaggaaaaatcatctaatgttaagaatgaaaatacaagtggcacccgtaaatctgaaaacctccggggctgtgatttacttcaagaggtctcagtcaccattcgaagatttaagaaaacctcaatttctaaggaaagagtgcaacgatgtgccatgttacagttttcagaatttcatgagaagcttcttaatactctttgcagaaaaacagatgatggccagatcacagaacatgcccagagccttgtgttggatactctctgttggttagctggagttcattcaaatggacccggaagctcaaaggaaggaaatgagaacctactttcaaaaacacgaaaatttctgtcagacatcgtacgtgtttgcttctttgaggcaggacgaagtatagcccataagtgtgcccgatttctagccttgtgcattagtaatggcaaatgtgacccatgtcaaccagcatttggacctgttctgttgaaggctttacttgataatatgtcatttttacctgcagcaacaactggtggttctgtctattggtattttgtcttactgaattatgtgaaagatgaagatctggctggatgcagtacagcttgtgcatctttgcttactgcagtgtccagacagttacaggacaggctaacaccaatggaggctttacttcagacaagatatggattatatagctcaccatttgatccagtcctctttgatttggagatgagtggctcttcttgtaaaaatgtttataacagcagcattggtgtccagtcagatgaaattgatttatcagatgtcctttcagATGTCACTGTTGGAGCCTTCATGTCCGACAGCGTGGTTCTTCTCAGAGCAAGGCCTGTCATTACGGTGGATGTCTCCATCTTCCTCCCGGGCTCCATCAACATCACAGCGCCTCAGTGTCACGACGGACAGCAGCCTGTGAACTGCCTGAACGTCACCACCTGCTTCAGCTTCCATGGCAAACACGTTCCAGGAGAGATTGGCCTGAATTATGTTCTGATGGCTGACGTGGCCAAAAAGGAGAAGGGCCAGATGCCCAGGGTCTACTTTGTGCTGCTGGGAGAGACCATGGGTCAGGTCACAGAGAAGCTGCAGCTGACTTACATGGAGGAGACGTGTCGTCACTATGTGGCCCATGTGAAGCGGAGGGTGCAGGACGTCATCAGCCCGATCGTGTTTGAAGCAGCCTACAGCCTCAGTGAGCATGTGACTGGAGAGGAGGAGAGGGAACTGCCGCCTCTGACACCAGTTCTCCGCTGGAAAAAGGGACAAAAGATTGCCCAAAAGAATCAGACTGTTTTTGAAAGGAATTGCCGTTCAGAGGACTGTGCCGCAGACCTGCAGCTTCAGGGTAAACTGCTGCTCTCCAGTATGGATGAGAAAACCCTGTATCTAGCTTTGGGGGCTGTGAAGAACATCTCCCTAAACATCTCTATCTCCAACCTCGGAGATGATGCCTATGATGCCAACGTGTCCTTCAATGTTTCCCGGGAGCTCTTCTTCATCAACATGTGGCAGAAGGAGGAGATGGGCATCTCCTGTGAGCTGCTGGAATCGGACTTCCTCAAATGCAGCGTGGGATTTCCTTTCATGAGGTCAAAGTCAAAGTATGAATTCAGCGTGATCTTTGATACAAGCCACCTGTCTGGGGAAGAGGAAGTTCTCAGCTTCATTGTTACTGCTCAGAGTGGCAACACGGAGCGCTCTGAATCCCTGCATGACAACACCCTCGTGCTGATGGTGCCACTGATGCACGAGGTGGACACGTCCATCACCGGAATCATGTCTCCAACCTCCTTTGTATATGGCGAGTCCGTGGACGCAGCCAACTTCATTCAGCTGGATGACCTGGAGTGTCACTTTCAGCCCATCAATATCACCCTTCAGGTCTACAACACTGGCCCAAGCACCCTTCCAGGGTCATCTGTCAGCATCTCTTTCCCTAATCGACTCTCATCTGGTGGTGCAGAGATGTTTCATGTCCAGGAAATGGTGGTGGGCCAAGAGAAGGGAAACTGCTCTTTCCAGAAAAACCCAACTCCCTGCATCATCCCTCAAGAACAAGAAAATATCTTCCACACAATATTTGCTTTTTTCACAAAGTCTGGAAGAAAAGTCTTGGACTGTGAAAAACCAGGAATTTCTTGCCTAACAGCACACTGTAACTTTAGTGCTCTTGCTAAAGAAGAAAGTCGTACTATAGACATTTACATGCTGCTGAACACAGAAATACTGAAAAAGGACAGTTCGTCTGTCATCCAGTTCATGTCCCGCGCCAAGGTGAAGGTGGATCCTGCCCTAAGGGTGGTGGAAATAGCTCATGGGAACCCAGAAGAGGTGACGGTGGTCTTCGAGGCCCTGCACAATCTGGAGCCCCGTGGCTACGTCGTGGGGTGGATCATCGCCATCAGTTTGTTGGTGGGAATCCTCATCTTCCTGCTGCTGGCCGTGCTGCTCTGGAAGATGGGCTTCTTTCGCCGAAGGTACAAAGAAATTATCGAAGCTGAGAAGAACCGGAAAGAGAATGAAGACAGTTGGGACTGGGTCCAGAAAAACCAGTGA MVTGGGAAPPGTVTEPLPSVIVLSAGRKMAAAAAAASGPGCSSAAGAGAAGVSEWLVLRDGCMHCDADGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSAKPGGQVKCQYISAVDKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACLEKVDISSTEGYDLFITQLKDGLKNTSHETAANHKVAKWATVTFHLPHHVLKSIASAIVNELKKINQNVAALPVASSVMDRLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQPASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPAQFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQLILSGDPSSGVDSRRPTLAWLEDSSSCSDIPKLEGDSDDLLEDSDSEEHSRSDSVTGHTSQKEAMEVSLDITALSILQQPEKLQWEIVANVLEDTVKDLEELGANPCLTNSKSEKTKEKHQEQHNIPFPCLLAGGLLTYKSPATSPISSNSHRSLDGLSRTQGESISEQGSTDNESCTNSELNSPLVRRTLPVLLLYSIKESDEKAGKIFSQMNNIMSKSLHDDGFTVPQIIEMELDSQEQLLLQDPPVTYIQQFADAAANLTSPDSEKWNSVFPKPGTLVQCLRLPKFAEEENLCIDSITPCADGIHLLVGLRTCPVESLSAINQVEALNNLNKLNSALCNRRKGELESNLAVVNGANISVIQHESPADVQTPLIIQPEQRNVSGGYLVLYKMNYATRIVTLEEEPIKIQHIKDPQDTITSLILLPPDILDNREDDCEEPIEDMQLTSKNGFEREKTSDISTLGHLVITTQGGYVKILDLSNFEILAKVEPPKKEGTEEQDTFVSVIYCSGTDRLCACTKGGELHFLQIGGTCDDIDEADILVDGSLSKGIEPSSEGSKPLSNPSSPGISGVDLLVDQPFTLEILTSLVELTRFETLTPRFSATVPPCWVEVQQEQQQRRHPQHLHQQHHGDAAQHTRTWKLQTDSNSWDEHVFELVLPKACMVGHVDFKFVLNSNITNIPQIQVTLLKNKAPGLGKVNALNIEVEQNGKPSLVDLNEEMQHMDVEESQCLRLCPFLEDHKEDILCGPVWLASGLDLSGHAGMLTLTSPKLVKGMAGGKYRSFLIHVKAVNERGTEEICNGGMRPVVRLPSLKHQSNKGYSLASLLAKVAAGKEKSSNVKNENTSGTRKSENLRGCDLLQEVSVTIRRFKKTSISKERVQRCAMLQFSEFHEKLLNTLCRKTDDGQITEHAQSLVLDTLCWLAGVHSNGPGSSKEGNENLLSKTRKFLSDIVRVCFFEAGRSIAHKCARFLALCISNGKCDPCQPAFGPVLLKALLDNMSFLPAATTGGSVYWYFVLLNYVKDEDLAGCSTACASLLTAVSRQLQDRLTPMEALLQTRYGLYSSPFDPVLFDLEMSGSSCKNVYNSSIGVQSDEIDLSDVLSDVTVGAFMSDSVVLLRARPVITVDVSIFLPGSINITAPQCHDGQQPVNCLNVTTCFSFHGKHVPGEIGLNYVLMADVAKKEKGQMPRVYFVLLGETMGQVTEKLQLTYMEETCRHYVAHVKRRVQDVISPIVFEAAYSLSEHVTGEEERELPPLTPVLRWKKGQKIAQKNQTVFERNCRSEDCAADLQLQGKLLLSSMDEKTLYLALGAVKNISLNISISNLGDDAYDANVSFNVSRELFFINMWQKEEMGISCELLESDFLKCSVGFPFMRSKSKYEFSVIFDTSHLSGEEEVLSFIVTAQSGNTERSESLHDNTLVLMVPLMHEVDTSITGIMSPTSFVYGESVDAANFIQLDDLECHFQPINITLQVYNTGPSTLPGSSVSISFPNRLSSGGAEMFHVQEMVVGQEKGNCSFQKNPTPCIIPQEQENIFHTIFAFFTKSGRKVLDCEKPGISCLTAHCNFSALAKEESRTIDIYMLLNTEILKKDSSSVIQFMSRAKVKVDPALRVVEIAHGNPEEVTVVFEALHNLEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYKEIIEAEKNRKENEDSWDWVQKNQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense FALSE NA NA NA NA NA NA NA NA NA 28554 ZBTB40::ZMYM4 ENSG00000184677.18::ENSG00000146463.12 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 218 TRUE 429 TRUE 151 ZBTB40 ENSG00000184677.18 protein_coding + + chr1:22428838-22531157:+ chr1:22452004:+ chr1:22755331-22857650:+ chr1:22778497:+ ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35325360:+ chr1:35734310-35887659:+ chr1:35790961:+ chr1:22460497,chr1:22460501,chr1:22460512,chr1:22460535 chr1:35314857,chr1:35314857,chr1:35314857,chr1:35314857 NA NA chr1:22786990,chr1:22786994,chr1:22787005,chr1:22787028 chr1:35780458,chr1:35780458,chr1:35780458,chr1:35780458 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:12.74Mb] 12 32 12 17.61 ONLY_REF_SPLICE YES_LDAS 0.2981 GT 1.9656 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28561 PSMB2::CELF4 ENSG00000126067.12::ENSG00000101489.20 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PSMB2 ENSG00000126067.12 protein_coding - - chr1:35599541-35641526:- chr1:35641342:- chr1:36065142-36107127:- chr1:36106943:- CELF4 ENSG00000101489.20 protein_coding - - chr18:37243040-37565827:- chr18:37529188:- chr18:34823003-35145790:- chr18:35109151:- chr1:35638701,chr1:35638703 chr18:37536478,chr18:37536477 NA NA chr1:36104302,chr1:36104304 chr18:35116441,chr18:35116440 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr18] 6 6 6 6 ONLY_REF_SPLICE YES_LDAS 0.1208 GT 1.9086 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28563 AGO3::PPP6R3 ENSG00000126070.20::ENSG00000110075.15 HS746T SRR8615322 SRR8652116 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:36058938:+ chr1:36396319-36538101:+ chr1:36524539:+ PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68505145:+ chr11:68228199-68382802:+ chr11:68272613:+ chr1:36059698,chr1:36059696 chr11:68493488,chr11:68493483 NA NA chr1:36525299,chr1:36525297 chr11:68260956,chr11:68260951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr11] 3 10 3 9.5 INCL_NON_REF_SPLICE YES_LDAS 0.1258 GT 1.9219 AG 1.6049 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28565 UQCRC2::LCMT1 ENSG00000140740.11::ENSG00000205629.12 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 229 FALSE NA FALSE NA UQCRC2 ENSG00000140740.11 protein_coding + + chr16:21953288-21983660:+ chr16:21958599:+ chr16:21964609-21994981:+ chr16:21969920:+ LCMT1 ENSG00000205629.12 protein_coding + + chr16:25111731-25178231:+ chr16:25151554:+ chr16:25123052-25189552:+ chr16:25162875:+ chr16:21960954,chr16:21960952 chr16:25148893,chr16:25148888 NA NA chr16:21972275,chr16:21972273 chr16:25160214,chr16:25160209 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Peptidase_M16|49-194|1.3e-37^YdgH_BhsA-like|91-114|5.9e-06^Peptidase_M16_C-PARTIAL|199-332~|2.1e-25^YdgH_BhsA-like|300-317|0.24 none ["UQCRC2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:3.13Mb] 104 66 104 66 ONLY_REF_SPLICE YES_LDAS 1.9607 GT 1.8256 AG 1.8295 ENST00000268379.9 1-332 ENST00000399069.8 405-1005 chr16|+|[0]21953424-21953456[2]|[0]21957235-21957318[2]|[0]21957417-21957566[2]|[0]21958535-21958599[1]<==>chr16|+|[2]25151554-25151615[0]|[1]25161102-25161204[1]|[2]25164598-25164718[2]|[0]25169112-25169213[2]|[0]25170714-25170805[1]|[2]25174937-25175034[0]|[1]25178001-25178023[2] atgaagctactaaccagagccggctctttctcgagattttattccctcaaagttgcccccaaagttaaagccacagctgcgcctgcaggagcaccgccacaacctcaggaccttgagtttaccaagttaccaaatggcttggtgattgcttctttggaaaactattctcctgtatcaagaattggtttgttcattaaagcaggcagtagatatgaggacttcagcaatttaggaaccacccatttgctgcgtcttacatccagtctgacgacaaaaggagcttcatctttcaagataacccgtggaattgaagcagttggtggcaaattaagATGCAAGCCTCCCCTATCCAGCCCCATTCTAGAACTGCATTCAGAGGACACACTTCAGATGGATGGACACATACTGGATTCAAAGAGATATGCCGTTATTGGAGCAGATCTCCGAGACCTGTCTGAACTGGAAGAGAAGCTAAAGAAATGTAACATGAATACACAATTGCCAACACTCCTGATAGCTGAATGTGTGCTGGTTTACATGACTCCAGAGCAGTCCGCAAACCTCCTGAAGTGGGCAGCCAACAGTTTTGAGAGAGCCATGTTCATAAACTACGAACAGGTGAACATGGGTGATCGGTTTGGGCAGATCATGATTGAAAACCTGCGGAGACGCCAGTGTGACCTGGCGGGAGTGGAGACCTGCAAGTCATTAGAGTCACAGAAAGAACGGCTCCTGTCGAATGGGTGGGAAACAGCATCGGCCGTCGACATGATGGAGTTGTACAACAGGTTACCTCGAGCTGAAGTGAGCAGGATAGAATCACTTGAATTCCTGGATGAAATGGAGCTGCTGGAGCAGCTCATGCGGCATTACTGCCTTTGCTGGGCAACCAAAGGAGGAAATGAGCTTGGGCTGAAGGAGATAACTTATTAA MKLLTRAGSFSRFYSLKVAPKVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLRCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28568 CCDC171::SNAPC3 ENSG00000164989.17::ENSG00000164975.16 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 230 FALSE NA FALSE NA CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15695337:+ chr9:15553041-16061661:+ chr9:15695335:+ SNAPC3 ENSG00000164975.16 protein_coding + + chr9:15422734-15465953:+ chr9:15433552:+ chr9:15422732-15465951:+ chr9:15433550:+ chr9:15718436,chr9:15718436,chr9:15718435 chr9:15431355,chr9:15431361,chr9:15431351 NA NA chr9:15718434,chr9:15718434,chr9:15718433 chr9:15431353,chr9:15431359,chr9:15431349 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TrbI_Ftype|32-42|0.71^Mce4_CUP1|494-512|0.067^Mce4_CUP1|523-574|0.17^TrbI_Ftype|526-570|0.00012^TrbI_Ftype|677-698|0.31^Mce4_CUP1|1040-1122|0.00014^TrbI_Ftype|1079-1112|0.58 SNAPC3-PARTIAL|~393-405|9e-81 ["SNAPC3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.09Mb];LOCAL_REARRANGEMENT:+:[86944] 25 12 25 12 ONLY_REF_SPLICE YES_LDAS 0.4267 GT 1.9329 AG 1.5656 ENST00000380701.8 1-1318 ENST00000610884.4 393-1236 chr9|+|[0]15564089-15564129[1]|[2]15571624-15571759[2]|[0]15578849-15579023[0]|[1]15591366-15591556[2]|[0]15594041-15594172[2]|[0]15623267-15623413[2]|[0]15657127-15657219[2]|[0]15666163-15666323[1]|[2]15678758-15678896[2]|[0]15695235-15695337[0]<==>chr9|+|[2]15433552-15433636[2]|[0]15444602-15444706[2]|[0]15447095-15447244[2]|[0]15451320-15451402[1]|[2]15453041-15453205[1]|[2]15457960-15458067[1]|[2]15459719-15459866[2] atgaatttgaatacttcaagtaatactggtgatacccaaaggttgaagattgcctcattggatgtaaaacaaatacttaaaaatgaaacagagttggatattactgataatctcaggaagaaactccattgggctaaaaaagaaaagttagaaataacaaccaaacacaatgcagagctggcaagctatgagagccagattgccaagctacggtccgaggttgaaaagggagaagcattgcgacaaagtctggaatatgacctagctgttgctagaaaggaagctggtcttggaagacgggctgctgaagaaagattagccgaggcacataggatccaagaaaaactctgtgcacagaattcagaacttcaagcaaagacaaatgagactgagaaagcatttcagacttctcagcaaaaatggaaagaagaatgcagaagatttgaacatgatttggaggaaagagacaatatgatccaaaattgcaatcgagaatatgatttacttatgaaagaaaaaagcagactagagaaaactctacaggaagcgttggaaaaacatcaacgggagaagaatgagatggagtctcatatcagggagacagcattggaggagtttagattacaagaagaacaatgggaagcagaaagaagagaattacaatttatagtacaggagcaagatactgctgtgcaaaatatgcataagaaagtagaaaaattagaaacagaacatatggactgctctgaccttttacggcgacaaacaagtgaacttgaatttagcactcaacgagaggaacgccttagaaaagaatttgaggcaactactctaagagtgaggaaattagaagaaaacattgaagcagaaagagcagcgcatttggaatcaaaatttaattctgaaattattcagttacggattcgagaccttgaaggagctttgcaagtagagaaggccagtcaagcagaagctgttgctgatttggaaattatcaagaatgaattcaaagaagttgaaagtgcatatgagcgagaaaagcataatgcacaagagagctttgcaaaactaaatttattagaaaaagagtatttctccaaaaataagaaactaaatgaagacatcgaggaacagaagaaagtaattatagacctttcaaagagactccagtataatgaaaaaagttgcagtgaattacaggaagaactagtaatggctaagaagcaccaggccttcctagtagagacatgtgaaaataacgtgaaagaattggaatcgatcttggacagctttactgtgtcgggccagtggacatcagGGTTAGAAAAAGGTTCTTGGAACATCGGGAAGAAACCATTACAATAGATCGAGCCTGCAGACAAGAAACATTCGTTTATGAGATGGAGTCACATGCCATAGGAAAAAAGCCTGAAAATTCAGCAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGCACAAAGAACACAAACCATACCAAACAATGCTGGTGTTGGGCAGTCAAAAACTCACACAACTGAGGGATTCAATTCGATGTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACTCCTGACCAAGCCCCTGAGCACATCAGCAAAGACCTATACAAATCAGCCTTCTTTTATTTTGAAGGAACATTTTATAATGATAAAAGATACCCAGAATGCAGAGATTTGAGCAGAACTATCATTGAGTGGTCAGAGTCCCATGATAGAGGCTATGGAAAGTTTCAGACTGCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTAAACTGGGTTTTCCTTACTTATACTGTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGACATAAGGCTTGTGCATCATGATGACTGCTTGGATAGGACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGGACCAGAAAATGTTTTGTTTGTAAAATGTATACAGCCAGATGGGTGACGAACAATGACAGTTTTGCACCAGAGGACCCATGCTTCTTTTGTGATGTTTGCTTCCGAATGCTGCACTATGATTCAGAAGGCAACAAACTGGGGGAATTCCTTGCTTATCCTTATGTTGATCCTGGAACCTTTAATTAA MNLNTSSNTGDTQRLKIASLDVKQILKNETELDITDNLRKKLHWAKKEKLEITTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDLLMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKVEKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQESFAKLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGLEKGSWNIGKKPLQ*IEPADKKHSFMRWSHMP*EKSLKIQQT*LKKGSLSYL*ISCTLLYFISTKNTNHTKQCWCWAVKNSHN*GIQFDVSVTSRLVVNSATLLTKPLSTSAKTYTNQPSFILKEHFIMIKDTQNAEI*AELSLSGQSPMIEAMESFRLLEWKISPSMTCVLNWVFLTYTVIRETVNMSLSLLT*GLCIMMTAWIGHCIPSLSRSIGYGPENVLFVKCIQPDG*RTMTVLHQRTHASFVMFASECCTMIQKATNWGNSLLILMLILEPLI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28580 TMCO3::NCBP3 ENSG00000150403.18::ENSG00000074356.17 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 233 TRUE 466 FALSE NA TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113510424:+ chr13:114145336-114208905:+ chr13:114164739:+ NCBP3 ENSG00000074356.17 protein_coding - - chr17:3802158-3846246:- chr17:3822052:- chr17:3705452-3749540:- chr17:3725346:- chr13:113514309 chr17:3825180 NA NA chr13:114168624 chr17:3728474 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF16|98-195|0.0001^Peptidase_S46|99-245|0.0017^Na_H_Exchanger|274-660|7.7e-66^DUF5453|449-517|0.00011^DUF5453|580-599|0.55 none ["CCLE_StarF2019"] 8 8 8 3.37 ONLY_REF_SPLICE YES_LDAS 0.1312 GT 1.5628 AG 1.5546 ENST00000434316.7 1-1225 ENST00000389005.6 797-1863 chr13|+|[0]113495582-113496025[2]|[0]113498342-113498521[2]|[0]113499958-113500149[2]|[0]113501752-113501880[2]|[0]113503496-113503588[2]|[0]113510238-113510424[0]<==>chr17|-|[2]3813044-3813279[1]|[0]3814322-3814483[1]|[0]3816116-3816270[2]|[1]3818263-3818572[1]|[0]3821249-3821352[2]|[1]3821953-3822052[1] atgaaggtgttgggaagaagcttcttctgggtgctgtttcccgtccttccctgggcggtgcaggctgtggagcacgaggaggtggcgcagcgtgtgatcaaactgcaccgcgggcgaggggtggctgccatgcagagccggcagtgggtccgggacagctgcaggaagctctcagggcttctccgccagaagaatgcagttctgaacaaactgaaaactgcaattggagcagtggagaaagacgtgggcctgtcggatgaagagaaactgtttcaggtgcacacgtttgaaattttccagaaagagctgaatgaaagtgaaaattccgttttccaagctgtctacggactgcagagagccctgcagggggattacaaagatgtcgtgaacatgaaggagagcagccggcagcgcctggaggccctgagagaggctgcaataaaggaagaaacagaatatatggaacttctggcagcagaaaaacatcaagttgaagcccttaaaaatatgcaacatcaaaaccaaagtttatccatgcttgacgagattcttgaagatgtaagaaaggcagcggatcgtctggaggaagagatagaggaacatgcttttgacgacaataaatcagtcaagggggtcaattttgaggcagttctgagggtggaggaagaagaggccaattctaagcaaaatataacaaaacgagaagtggaggatgacttgggtcttagcatgctgattgactcccagaacaaccagtatattttgaccaagcccagagattcaaccatcccacgtgcagatcaccactttataaaggacattgttaccataggaatgctgtccttgccttgtggctggctatgtacagccataggattgcctacaatgtttggttatattatttgtggtgtacttctgggaccttcaggactaaatagtattaagtctattgtgcaagtggagacattaggagaatttggggtgttttttactctttttcttgttggcttagaattttctccagaaaagctaagaaaggtgtggaagatttccttacaagggccgtgttacatgacactgttaatgattgcatttggcttgctgtgggggcatctcttgcggatcaaacccacgcagagcgtcttcatttccacgtgtctgtccttgtcaagcacacccctcgtgtccaggttcctcatgggcagtgctcggggtgacaaagaagATGACAAAAAGGAACTTGGAGCAGCCAGAAGAAGTCAGTATTACATGAAATATGGGAATCCAAATTATGGAGGCATGAAAGGAATTCTTAGCAATTCATGGAAGCGAAGATATCATTCCCGTCGTATTCAGCGGGACGTGATCAAGAAGAGAGCCCTGATTGGGGATGACGTTGGCTTGACGTCGTATAAACATCGACATTCTGGGCTAGTGAATGTTCCCGAGGAACCCATTGAAGAGGAGGAAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGACCAGGACATGGATGCAGATGACAGAGTGGTGGTAGAGTACCACGAGGAGCTCCCGGCTCTCAAGCAGCCCCGGGAGCGGAGCGCGTCTAGACGATCCAGTGCCAGCAGCTCAGACTCAGATGAAATGGACTATGATCTAGAACTGAAAATGATTTCCACGCCTTCACCAAAGAAAAGCATGAAAATGACTATGTATGCTGACGAAGTGGAATCTCAGTTGAAAAATATTAGGAACTCCATGAGGGCAGATAGTGTATCTTCAAGCAATATCAAAAACCGAATTGGTAACAAATTACCACCTGAGAAATTTGCAGATGTCCGACATCTATTAGATGAGAAACGTCAGCACTCCCGTCCACGGCCACCAGTCAGCAGTACTAAATCAGATATACGCCAGCGGTTAGGAAAAAGACCACATTCTCCGGAAAAGGCTTTTAGTAGTAACCCCGTCGTTCGGAGAGAGCCCTCTTCTGATGTGCATAGTAGGCTAGGTGTTCCCAGGCAGGATAGTAAAGGCCTCTACGCCGATACTCGGGAGAAGAAATCAGGTAATTTATGGACTCGCCTAGGATCTGCACCCAAGACCAAAGAAAAGAATACGAAGAAAGTGGATCACAGGGCGCCTGGCGCTGAGGAAGACGACTCTGAGCTGCAAAGGGCATGGGGGGCTCTGATTAAGGAGAAAGAGCAGTCTCGCCAAAAGAAGAGCCGGTTAGATAACTTACCATCTCTCCAGATTGAAGTTAGTCGGGAAAGCAGCTCTGGTTCAGAGGCAGAGTCCTGA MKVLGRSFFWVLFPVLPWAVQAVEHEEVAQRVIKLHRGRGVAAMQSRQWVRDSCRKLSGLLRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELLAAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEDDKKELGAARRSQYYMKYGNPNYGGMKGILSNSWKRRYHSRRIQRDVIKKRALIGDDVGLTSYKHRHSGLVNVPEEPIEEEEEEEEEEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMISTPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLDEKRQHSRPRPPVSSTKSDIRQRLGKRPHSPEKAFSSNPVVRREPSSDVHSRLGVPRQDSKGLYADTREKKSGNLWTRLGSAPKTKEKNTKKVDHRAPGAEEDDSELQRAWGALIKEKEQSRQKKSRLDNLPSLQIEVSRESSSGSEAES* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28586 SH3GL2::ZNF418 ENSG00000107295.10::ENSG00000196724.13 NCIH1105 SRR8615329 SRR8652138 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 234 FALSE NA FALSE NA SH3GL2 ENSG00000107295.10 protein_coding + + chr9:17579066-17797124:+ chr9:17747134:+ chr9:17579064-17797122:+ chr9:17747132:+ ZNF418 ENSG00000196724.13 protein_coding - - chr19:57921882-57935402:- chr19:57928047:- chr19:58433250-58446770:- chr19:58439415:- chr9:17757629 chr19:57929855 NA NA chr9:17757627 chr19:58441223 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF6468|2-28|0.026^BAR-PARTIAL|6-114~|3.5e-85^BAR_3|6-44|0.34^NagJ_C|6-40|0.098^BAR_2|12-54|0.0043^BAR_3-PARTIAL|85-114~|2.2e-09^BAR_2-PARTIAL|105-114~|8.7e-12 zf-H2C2_2-PARTIAL|~134-138|8.1^XPA_N|191-196|6.6^C1_1|192-209|1.6^zf-H2C2_2|199-211|1^C1_4|200-211|0.88^zf_UBZ|202-211|0.22^zf-C2H2|203-215|2.6^zf-C2H2_4|203-216|2.3^zf-C2H2_jaz|203-220|0.59^Zn-ribbon_8|203-239|1.9^C1_1|216-267|0.021^zf-C2H2_11|230-244|0.32^zf-H2C2_2|231-240|0.27^zf-C2H2|231-252|1.6e-06^zf-C2H2_jaz|231-241|0.53^zf_UBZ|231-242|0.22^C1_4|231-280|0.00074^zf-C2H2_4|232-252|0.0012^zf-C2H2_6|232-248|0.00052^XPA_N|232-240|0.17^zf-H2C2_2|246-269|1.9e-10^ROKNT|247-260|1.6^C1_1|251-295|0.0063^zf-C2H2|258-280|1.4e-09^zf-C2H2_4|258-280|3.4e-06^zf-C2H2_jaz|258-278|0.00025^zf-C2H2_6|258-268|0.0018^zf-met|258-278|0.0012^zf_UBZ|258-277|0.0044^Zn-ribbon_8|258-293|0.0087^zf-C2H2_11|259-278|0.0042^XPA_N|259-268|0.069^HZS_alpha|268-291|1.5^zf-H2C2_2|272-297|3.1e-11^C1_1|279-320|0.031^C1_4|280-308|0.077^ROKNT|282-288|5.5^zf-C2H2|286-308|1.4e-09^zf-C2H2_4|286-308|3.4e-06^zf-C2H2_jaz|286-306|0.00025^zf-C2H2_6|286-296|0.0018^zf-met|286-306|0.0012^zf_UBZ|286-305|0.0044^Zn-ribbon_8|286-321|0.0056^zf-C2H2_11|287-306|0.0042^C1_4|287-336|0.0061^XPA_N|287-296|0.069^DUF2944|294-328|0.024^HZS_alpha|296-319|1.9^zf-H2C2_2|300-325|5e-12^C1_1|308-351|0.014^zf-C2H2|314-336|3.7e-10^zf-C2H2_4|314-336|3.2e-06^zf-C2H2_jaz|314-334|0.011^zf-C2H2_6|314-325|0.00087^zf-met|314-334|0.075^zf_UBZ|314-326|0.012^Zn-ribbon_8|314-349|0.023^zf-C2H2_11|315-334|0.026^C1_4|315-352|0.045^XPA_N|315-324|0.05^DUF2944|323-355|0.034^HZS_alpha|324-350|0.36^zf-H2C2_2|330-353|4.4e-11^C1_1|335-379|0.017^zf-C2H2|342-364|5.3e-10^zf-C2H2_4|342-364|5.1e-06^zf-C2H2_jaz|342-363|0.019^zf-C2H2_6|342-364|0.028^zf-met|342-364|0.00016^zf_UBZ|342-353|0.012^Zn-ribbon_8|342-377|0.18^zf-C2H2_11|343-360|0.00024^XPA_N|343-352|0.11^C1_4|344-379|0.5^DUF2944|351-383|0.077^HZS_alpha|352-378|0.016^zf-H2C2_2|356-381|2.3e-10^zf-C2H2|370-392|8.2e-09^zf-C2H2_4|370-392|5.7e-05^zf-C2H2_jaz|370-388|0.11^zf-C2H2_6|370-381|0.063^zf-met|370-387|0.47^zf_UBZ|370-388|0.00091^Zn-ribbon_8|370-409|0.035^zf-C2H2_11|371-390|0.00013^XPA_N|371-380|0.15^C1_4|372-407|0.27^zf-H2C2_2|385-409|1.9e-09^C1_1|388-433|0.0065^zf-C2H2|398-420|4.5e-10^zf-C2H2_4|398-420|4.2e-07^zf-C2H2_jaz|398-419|0.00018^zf-C2H2_6|398-416|0.0079^zf-met|398-420|4.6e-05^zf_UBZ|398-408|0.026^Zn-ribbon_8|398-437|0.0032^zf-C2H2_11|399-416|0.045^XPA_N|399-407|0.067^C1_4|400-436|0.016^zf-H2C2_2|412-437|1.2e-11^ROKNT|422-437|3^C1_1|423-461|0.024^zf-C2H2|426-448|1e-10^zf-C2H2_4|426-448|3e-07^zf-C2H2_jaz|426-447|0.00014^zf-C2H2_6|426-448|7.1e-06^zf-met|426-448|2.9e-05^zf_UBZ|426-436|0.027^Zn-ribbon_8|426-461|0.0057^zf-C2H2_11|427-444|0.12^C1_4|427-463|0.0095^XPA_N|427-435|0.067^HZS_alpha|436-459|0.021^zf-H2C2_2|440-463|3e-10^C1_1|449-488|0.017^zf-C2H2|454-476|1.3e-06^zf-C2H2_4|454-476|0.00022^zf-C2H2_jaz|454-474|0.0063^zf-C2H2_6|454-464|0.046^zf-met|454-474|0.0004^zf_UBZ|454-463|1^Zn-ribbon_8|454-463|0.2^zf-C2H2_11|455-460|5.1^XPA_N|455-463|0.15^C1_4|456-492|0.11^zf-H2C2_2|468-491|3.8e-11^C1_1|475-524|0.00027^ROKNT|478-494|3.5^zf-C2H2|482-504|2.6e-09^zf-C2H2_4|482-504|7.1e-06^zf-C2H2_jaz|482-502|0.00036^zf-C2H2_6|482-492|0.00019^zf-met|482-502|0.0044^zf_UBZ|482-493|0.012^Zn-ribbon_8|482-517|6.6e-05^zf-C2H2_11|483-491|1.1^C1_4|483-533|0.0031^XPA_N|483-494|0.0017^zf-H2C2_2|498-519|1.1e-10^C1_1|503-549|0.00062^zf-C2H2_jaz|509-519|0.043^zf-C2H2|510-532|1.2e-08^zf-C2H2_4|510-532|4.2e-06^zf-C2H2_6|510-532|3.3e-05^zf-met|510-528|0.13^zf_UBZ|510-528|0.00065^zf-C2H2_11|511-531|0.00069^XPA_N|511-522|0.013^zf-H2C2_2|527-548|2e-10^ROKNT|534-549|7.5^zf-C2H2|538-560|4e-09^zf-C2H2_4|538-560|1.4e-06^zf-C2H2_jaz|538-559|0.00015^zf-C2H2_6|538-561|0.00039^zf-met|538-558|1.2^zf_UBZ|538-557|0.0048^Zn-ribbon_8|538-573|0.0024^zf-C2H2_11|539-556|0.034^C1_4|539-575|0.011^XPA_N|539-550|0.0034^zf-H2C2_2|555-576|5.5e-09^C1_1|558-600|0.00042^zf-C2H2|566-585|0.00022^zf-C2H2_4|566-585|0.0016^zf-C2H2_jaz|566-577|0.043^zf-C2H2_6|566-578|0.0023^zf-met|566-577|0.64^zf_UBZ|566-581|0.0089^Zn-ribbon_8|566-602|0.00043^zf-C2H2_11|567-578|0.0083^XPA_N|567-575|0.066^C1_4|568-614|0.0064^zf-H2C2_2|580-602|1.8e-10^ROKNT|587-602|5.3^zf-C2H2|591-613|3.1e-06^zf-C2H2_4|591-613|0.0001^zf-C2H2_jaz|591-602|0.045^zf-C2H2_6|591-601|0.0017^zf-met|591-610|0.0012^zf_UBZ|591-600|0.039^Zn-ribbon_8|591-626|0.00032^zf-C2H2_11|592-601|0.05^XPA_N|592-601|0.013^zf-H2C2_2|608-629|3.2e-08^C1_1|614-658|5.8e-05^zf-C2H2|619-641|1.7e-07^zf-C2H2_4|619-641|2.5e-05^zf-C2H2_jaz|619-638|0.0079^zf-C2H2_6|619-641|1.8e-06^zf-met|619-629|0.36^zf_UBZ|619-637|1.8e-05^Zn-ribbon_8|619-658|0.0062^zf-C2H2_11|620-640|0.0037^C1_4|620-657|0.024^XPA_N|620-632|0.0044^ROKNT|630-659|0.0023^zf-H2C2_2|634-657|1.1e-10^zf-C2H2|647-669|1.5e-09^zf-C2H2_4|647-669|2.2e-06^zf-C2H2_jaz|647-667|0.00011^zf-C2H2_6|647-669|2.7e-05^zf-met|647-667|0.027^zf_UBZ|647-665|0.0022^Zn-ribbon_8|647-658|0.0081^zf-C2H2_11|648-667|0.03^XPA_N|648-659|0.0034^zf-H2C2_2|664-676|0.0053 ["SH3GL2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr19] 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1269 GT 1.2729 AG 1.2867 ENST00000380607.5 1-114 ENST00000595830.5 134-2031 chr9|+|[0]17579243-17579287[2]|[0]17747066-17747134[2]<==>chr19|-|[2]57926150-57928047[1] atgtcggtggccggcctcaagaagcagttccataaagccactcagaaagtgagtgagaaggttggaggagctgaaggaaccaagctagatgatgacttcaaagagatggaaaggGTTGTTGGTGTGGATCAGAAGATGAGGAGGCACCTTCTAAGAAGAGCATTTCTATACAAAGAGTGTCTCAGGTCAGCACTCCTGGGGCAGGTGTGTCTCCCAAGAAGGCCCACTCTTGTGAAATGTGTGGCGCGATCTTGGGAGACATTTTGCACTTGGCAGATCATCAGGGGACACATCACAAGCAGAAACTGCACAGGTGTGAGGCATGGGGGAATAAATTGTATGATAGTTCAAACCGTCCGCACCAGAATCAGTACCTTGGAGAGAAACCCTATAGAAGCAGTGTTGAGGAAGCATTGTTTGTGAAGAGGTGTAAGTTCCATGTGTCAGAGGAGTCATCTATCTTCATTCAGAGTGGAAAGGACTTTTTGCCCAGCTCAGGATTACTGCTGCAGGAGGCCACTCACACTGGGGAGAAGTCAAACAGCAAACCTGAGTGTGAGTCTCCCTTTCAGTGGGGAGATACTCATTACAGCTGTGGAGAATGCATGAAACATTCTAGCACCAAACACGTATTTGTTCAACAGCAGAGACTTCCCTCTAGAGAGGAATGTTATTGCTGGGAATGTGGGAAATCCTTTAGCAAATATGATAGCGTCAGTAATCATCAGAGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCACACTGGGAAAAGACCTTATGAATGTGGAGAATGTGGGAAATCTTTTAGTCATAAGGGCAGCCTTGTTCAGCATCAGCGAGTTCATACTGGAGAAAGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCAAAATGGTACTCTCATTAAACATCAACGAGTTCACACTGGAGAAAGACCTTATGAGTGTGAAGAATGTGGGAAATGTTTTACTCAGAAGGGCAATCTCATTCAACATCAACGAGGTCACACTAGTGAAAGACCTTATGAGTGTGAAGAATGTGGAAAATGTTTTAGTCAAAAGGGCACCCTAACTGAACATCATCGAGTTCACACTAGAGAACGACCTTATGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGACACCTTAGGAACCATCAGCGAGGTCACACTGGAGAAAGACCTTACGAGTGTGGAGAATGTGGGAAATCTTTTAGTCGAAAGGGCAACCTCATTCAGCATCAGCGAAGCCACACTGGAGAAAGGCCTTATGAGTGTAGAGAGTGTAGGAAATTATTTAGGGGCAAGTCCCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCATATGAATGTAATGAATGTGGGAAATCATTTCAAGACAGCTCTGGGTTTCGTGTTCATCAGAGAGTTCACACTGGAGAAAAACCGTTTGAGTGTAGTGAATGTGGGAAGTCATTTCCTCAAAGCTGTTCCCTCCTTCGACATCGGAGAGTTCATACTGGAGAAAGGCCTTATGAATGTGGAGAATGTGGAAAGTCATTTCATCAGAGCTCTTCCCTCCTTCGACATCAGAAAACTCACACTGCAGAAAGACCTTATGAGTGCAGAGAATGTGGGAAATTCTTCTCCAGTCTCCTTGAACACAGGAGAGTTCACACTGGAGAAAGGCCTTATGAATGCAGGGAATGTGGAAAAACATTTACTCGAAGGTCTGCGCATTTTAAACATCAGAGACTTCATACTCGAGGAAAGCCTTACGAGTGCAGCGAATGTGGGAAATCCTTTGCTGAAACCTTCAGTCTTACTGAACACAGGAGAGTACACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGAAAATCATTTCATCGAAGCTCTTCTCTCCTTCGACATCAGAGAGTTCACACAGAAAGAAGTCCTTACAAGTGA MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFKEMERVVGVDQKMRRHLLRRAFLYKECLRSALLGQVCLPRRPTLVKCVARSWETFCTWQIIRGHITSRNCTGVRHGGINCMIVQTVRTRISTLERNPIEAVLRKHCL*RGVSSMCQRSHLSSFRVERTFCPAQDYCCRRPLTLGRSQTANLSVSLPFSGEILITAVENA*NILAPNTYLFNSRDFPLERNVIAGNVGNPLANMIASVIIREFTLGKDLMNVENVGNLLVIRAALFSISEFTLGKDLMNVENVGNLLVIRAALFSISEFILEKDLMSVENVGNLLVKMVLSLNINEFTLEKDLMSVKNVGNVLLRRAISFNINEVTLVKDLMSVKNVENVLVKRAP*LNIIEFTLENDLMSVENVGNLLVERDTLGTISEVTLEKDLTSVENVGNLLVERATSFSISEATLEKGLMSVESVGNYLGASPTSLNTREFTLEKGHMNVMNVGNHFKTALGFVFIREFTLEKNRLSVVNVGSHFLKAVPSFDIGEFILEKGLMNVENVESHFIRALPSFDIRKLTLQKDLMSAENVGNSSPVSLNTGEFTLEKGLMNAGNVEKHLLEGLRILNIRDFILEESLTSAANVGNPLLKPSVLLNTGEYTLEKGLMSAVNVENHFIEALLSFDIREFTQKEVLTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28589 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 237 TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39763689:+ chr1:40157854-40229586:+ chr1:40229361:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.08Mb];LOCAL_INVERSION:-:+:[77108] 3107 3042 3106.84 1346.64 ONLY_REF_SPLICE YES_LDAS 43.1742 GT 1.9656 AG 1.5546 ENST00000441669.6 1-174 ENST00000356511.6 838-891 chr1|-|[2]39883318-39883491[0]<==>chr1|+|[0]39763689-39763742[2] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagAAACAAGAAGAGTCAGCAATTACCAGCCAGCCGAGGTCCTGGAAGCTGACGTAG MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQKQEESAITSQPRSWKLT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28590 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 236 TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39762517:+ chr1:40157854-40229586:+ chr1:40228189:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.08Mb];LOCAL_INVERSION:-:+:[77108] 1939 4658 1938.99 3134.64 ONLY_REF_SPLICE YES_LDAS 49.1863 GT 1.9656 AG 1.9219 ENST00000441669.6 1-174 ENST00000372830.5 838-945 chr1|-|[2]39883318-39883491[0]<==>chr1|+|[0]39762517-39762624[2] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagGTTGCCCCAGATACCAAGGCATCAAAAGCCAGGGGATCCAGAAAAAACAAAGATGGCCAAGAGAGAAACTGGGGGAAAAGCCAAAAGGTTGAGAGCCACACCATCTAG MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQVAPDTKASKARGSRKNKDGQERNWGKSQKVESHTI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28591 RLF::MYCL ENSG00000117000.9::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 238 TRUE 485 TRUE 167 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- chr1:40171194,chr1:40171192 chr1:39902364,chr1:39902365 NA NA chr1:40636866,chr1:40636864 chr1:40368036,chr1:40368037 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["RLF:Oncogene"];["MYCL:FoundationOne_panel","MYCL:ArcherDX_panel","MYCL:Oncogene"];["ChimerPub","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.26Mb] 1831 648 1831 368.7 ONLY_REF_SPLICE YES_LDAS 21.325 GT 1.9086 AG 1.4566 ENST00000372771.5 1-237 ENST00000397332.3 587-1185 chr1|+|[0]40161400-40161636[2]<==>chr1|-|[2]39897372-39897970[1] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagAGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGTCCCCCACCTGTAGAAAGTGAGGCTGCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGATACTGAGGATGTGACCAAGAGGAAGAATCACAACTTCCTGGAGCGCAAGAGGCGGAATGACCTGCGTTCGCGATTCTTGGCGCTGAGGGACCAGGTGCCCACCCTGGCCAGCTGCTCCAAGGCCCCCAAAGTAGTGATCCTAAGCAAGGCCTTGGAATACTTGCAAGCCCTGGTGGGGGCTGAGAAGAGGATGGCTACAGAGAAAAGACAGCTCCGATGCCGGCAGCAGCAGTTGCAGAAAAGAATTGCATACCTCACTGGCTACTAA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQRMKKLML*Q*RRGSLWVFGSRSPSRCEQTPWIPA*SISTSPSISNSTTMLPVFLQKAAPKKRLQRGVPKKRFWREMLQGKRKMRRMKRL*VPHL*KVRLPSPATPNLSVLILRM*PRGRITTSWSARGGMTCVRDSWR*GTRCPPWPAAPRPPK**S*ARPWNTCKPWWGLRRGWLQRKDSSDAGSSSCRKELHTSLAT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 28592 RLF::MYCL ENSG00000117000.9::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 239 TRUE 485 TRUE 167 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39901443:- chr1:40361100-40367928:- chr1:40367115:- chr1:40171194,chr1:40171192 chr1:39902364,chr1:39902365 NA NA chr1:40636866,chr1:40636864 chr1:40368036,chr1:40368037 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Myc_N|116-161|5.6e-14^Myc_N|191-257|1.1e-10^Rpn3_C|236-282|0.00044^Myc_N|252-316|0.14^HLH|312-363|4.5e-18^DUF3287|355-390|5e-05^Rpn3_C|381-391|0.34 ["RLF:Oncogene"];["MYCL:FoundationOne_panel","MYCL:ArcherDX_panel","MYCL:Oncogene"];["ChimerPub","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.26Mb] 958 1077 958 708.3 ONLY_REF_SPLICE YES_LDAS 16.1539 GT 1.9086 AG 1.7465 ENST00000372771.5 1-237 ENST00000397332.3 82-1185 chr1|+|[0]40161400-40161636[2]<==>chr1|-|[2]39897372-39897970[1]|[0]39900939-39901443[0] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagGGAGCGGACATGGACTACGACTCGTACCAGCACTATTTCTACGACTATGACTGCGGGGAGGATTTCTACCGCTCCACGGCGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCCACGTCGCCGCCCTGGGGCTTGGGTCCCGGCGCAGGGGACCCGGCCCCCGGGATTGGTCCCCCGGAGCCGTGGCCCGGAGGGTGCACCGGAGACGAAGCGGAATCCCGGGGCCACTCGAAAGGCTGGGGCAGGAACTACGCCTCCATCATACGCCGTGACTGCATGTGGAGCGGCTTCTCGGCCCGGGAACGGCTGGAGAGAGCTGTGAGCGACCGGCTCGCTCCTGGCGCGCCCCGGGGGAACCCGCCCAAGGCGTCCGCCGCCCCGGACTGCACTCCCAGCCTCGAAGCCGGCAACCCGGCGCCCGCCGCCCCCTGTCCGCTGGGCGAACCCAAGACCCAGGCCTGCTCCGGGTCCGAGAGCCCAAGCGACTCGGAGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGTCCCCCACCTGTAGAAAGTGAGGCTGCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGATACTGAGGATGTGACCAAGAGGAAGAATCACAACTTCCTGGAGCGCAAGAGGCGGAATGACCTGCGTTCGCGATTCTTGGCGCTGAGGGACCAGGTGCCCACCCTGGCCAGCTGCTCCAAGGCCCCCAAAGTAGTGATCCTAAGCAAGGCCTTGGAATACTTGCAAGCCCTGGTGGGGGCTGAGAAGAGGATGGCTACAGAGAAAAGACAGCTCCGATGCCGGCAGCAGCAGTTGCAGAAAAGAATTGCATACCTCACTGGCTACTAA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQQHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHPKPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 28593 TRIT1::PPIE ENSG00000043514.17::ENSG00000084072.17 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 484 TRUE 166 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39763651:+ chr1:40157854-40229586:+ chr1:40229323:+ chr1:39851432,chr1:39876290,chr1:39876290,chr1:39876292,chr1:39874922,chr1:39851434 chr1:39749460,chr1:39696618,chr1:39696604,chr1:39696616,chr1:39710740,chr1:39749458 NA NA chr1:40317104,chr1:40341962,chr1:40341962,chr1:40341964,chr1:40340594,chr1:40317106 chr1:40215132,chr1:40162290,chr1:40162276,chr1:40162288,chr1:40176412,chr1:40215130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.08Mb];LOCAL_INVERSION:-:+:[77108] 353 3205 352.85 174.96 INCL_NON_REF_SPLICE YES_LDAS 5.1168 GT 1.9656 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28595 TRIT1::MYCL ENSG00000043514.17::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 242 TRUE 489 TRUE 169 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 none ["MYCL:FoundationOne_panel","MYCL:ArcherDX_panel","MYCL:Oncogene"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.01Mb];LOCAL_REARRANGEMENT:-:[11915] 123 77 123 52.04 ONLY_REF_SPLICE YES_LDAS 1.6969 GT 1.9656 AG 1.4566 ENST00000441669.6 1-174 ENST00000397332.3 587-1185 chr1|-|[2]39883318-39883491[0]<==>chr1|-|[2]39897372-39897970[1] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagAGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGTCCCCCACCTGTAGAAAGTGAGGCTGCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGATACTGAGGATGTGACCAAGAGGAAGAATCACAACTTCCTGGAGCGCAAGAGGCGGAATGACCTGCGTTCGCGATTCTTGGCGCTGAGGGACCAGGTGCCCACCCTGGCCAGCTGCTCCAAGGCCCCCAAAGTAGTGATCCTAAGCAAGGCCTTGGAATACTTGCAAGCCCTGGTGGGGGCTGAGAAGAGGATGGCTACAGAGAAAAGACAGCTCCGATGCCGGCAGCAGCAGTTGCAGAAAAGAATTGCATACCTCACTGGCTACTAA MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQRMKKLML*Q*RRGSLWVFGSRSPSRCEQTPWIPA*SISTSPSISNSTTMLPVFLQKAAPKKRLQRGVPKKRFWREMLQGKRKMRRMKRL*VPHL*KVRLPSPATPNLSVLILRM*PRGRITTSWSARGGMTCVRDSWR*GTRCPPWPAAPRPPK**S*ARPWNTCKPWWGLRRGWLQRKDSSDAGSSSCRKELHTSLAT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 28597 ENSG00000273590::ENSG00000214955 ENSG00000273590.6::ENSG00000214955.5 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000273590 ENSG00000273590.6 artifact + + chr21:7744951-7758630:+ chr21:7748987:+ chr21:35747779-35761452:+ chr21:35751815:+ ENSG00000214955 ENSG00000214955.5 lncRNA + + chr21:34205055-34325034:+ chr21:34324736:+ chr21:35577356-35697334:+ chr21:35697036:+ NA NA chr21:34380087,chr21:34380086,chr21:34380087 chr21:34319700,chr21:34319696,chr21:34319698 chr21:35752386,chr21:35752385,chr21:35752386 chr21:35692000,chr21:35691996,chr21:35691998 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 82 29 41 14.5 ONLY_REF_SPLICE YES_LDAS 0.5381 GT 1.8892 AG 1.2729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28600 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3683180:+ chr1:3569080-3652765:+ chr1:3599744:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42912157:- chr22:43231418-43411155:- chr22:43308163:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TP73:Oncogene"];["PACSIN2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr22] 64 46 64 44.19 ONLY_REF_SPLICE YES_LDAS 1.0488 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28601 TRIT1::MYCL ENSG00000043514.17::ENSG00000116990.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 243 TRUE 489 TRUE 169 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39901443:- chr1:40361100-40367928:- chr1:40367115:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 Myc_N|116-161|5.6e-14^Myc_N|191-257|1.1e-10^Rpn3_C|236-282|0.00044^Myc_N|252-316|0.14^HLH|312-363|4.5e-18^DUF3287|355-390|5e-05^Rpn3_C|381-391|0.34 ["MYCL:FoundationOne_panel","MYCL:ArcherDX_panel","MYCL:Oncogene"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.01Mb];LOCAL_REARRANGEMENT:-:[11915] 39 97 39 44.96 ONLY_REF_SPLICE YES_LDAS 0.814 GT 1.9656 AG 1.7465 ENST00000441669.6 1-174 ENST00000397332.3 82-1185 chr1|-|[2]39883318-39883491[0]<==>chr1|-|[2]39897372-39897970[1]|[0]39900939-39901443[0] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagGGAGCGGACATGGACTACGACTCGTACCAGCACTATTTCTACGACTATGACTGCGGGGAGGATTTCTACCGCTCCACGGCGCCCAGCGAGGACATCTGGAAGAAATTCGAGCTGGTGCCATCGCCCCCCACGTCGCCGCCCTGGGGCTTGGGTCCCGGCGCAGGGGACCCGGCCCCCGGGATTGGTCCCCCGGAGCCGTGGCCCGGAGGGTGCACCGGAGACGAAGCGGAATCCCGGGGCCACTCGAAAGGCTGGGGCAGGAACTACGCCTCCATCATACGCCGTGACTGCATGTGGAGCGGCTTCTCGGCCCGGGAACGGCTGGAGAGAGCTGTGAGCGACCGGCTCGCTCCTGGCGCGCCCCGGGGGAACCCGCCCAAGGCGTCCGCCGCCCCGGACTGCACTCCCAGCCTCGAAGCCGGCAACCCGGCGCCCGCCGCCCCCTGTCCGCTGGGCGAACCCAAGACCCAGGCCTGCTCCGGGTCCGAGAGCCCAAGCGACTCGGAGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGTCCCCCACCTGTAGAAAGTGAGGCTGCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGATACTGAGGATGTGACCAAGAGGAAGAATCACAACTTCCTGGAGCGCAAGAGGCGGAATGACCTGCGTTCGCGATTCTTGGCGCTGAGGGACCAGGTGCCCACCCTGGCCAGCTGCTCCAAGGCCCCCAAAGTAGTGATCCTAAGCAAGGCCTTGGAATACTTGCAAGCCCTGGTGGGGGCTGAGAAGAGGATGGCTACAGAGAAAAGACAGCTCCGATGCCGGCAGCAGCAGTTGCAGAAAAGAATTGCATACCTCACTGGCTACTAA MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQGADMDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSENEEIDVVTVEKRQSLGIRKPVTITVRADPLDPCMKHFHISIHQQQHNYAARFPPESCSQEEASERGPQEEVLERDAAGEKEDEEDEEIVSPPPVESEAAQSCHPKPVSSDTEDVTKRKNHNFLERKRRNDLRSRFLALRDQVPTLASCSKAPKVVILSKALEYLQALVGAEKRMATEKRQLRCRQQQLQKRIAYLTGY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 28602 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:49851396:- chr1:48998526-50489626:- chr1:50317068:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50258121:- chr1:50695334-50786864:- chr1:50723793:- chr1:49791143 chr1:50259457 NA NA chr1:50256815 chr1:50725129 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 30 9 30 7.71 ONLY_REF_SPLICE YES_LDAS 0.3655 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28604 NR2C2::ANKRD28 ENSG00000177463.16::ENSG00000206560.12 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NR2C2 ENSG00000177463.16 protein_coding + + chr3:14947583-15053600:+ chr3:15039227:+ chr3:14989090-15095107:+ chr3:15080734:+ ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15766312:- chr3:15708743-15901278:- chr3:15807819:- chr3:15040581,chr3:15040577 chr3:15789345,chr3:15789349 NA NA chr3:15082088,chr3:15082084 chr3:15830852,chr3:15830856 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-C4|135-202|2.3e-35^FAA_hydro_N_2|271-322|0.00031^FAA_hydro_N_2|355-371|0.42^Hormone_recep|392-585|3.7e-48^FAA_hydro_N_2|409-436|0.88^XS|466-553|7.8e-05 Ank_4|30-70|8.4e-12^Ank|31-49|6.4e-05^Ank_2|31-114|1.7e-21^Ank_3|32-46|0.064^Ank_5|37-91|9.7e-11^Ank|52-81|3.3e-06^Ank_3|52-74|0.00058^Ank_4|65-104|1e-10^Ank_5|76-115|4.3e-08^Ank|84-115|9.6e-13^Ank_3|84-112|6.5e-10^Ank_4|98-137|2.9e-12^Ank_5|103-147|1.1e-06^Ank_2|116-178|1.2e-17^Ank_3|118-143|2.3e-06^Ank_4|119-161|8.5e-14^Ank|120-148|3.5e-10^ADDz_Dnmt3b|131-150|1.1^Ank_5|136-190|3.8e-13^Ank|151-180|5.8e-09^Ank_4|151-195|1.3e-16^Ank_3|151-175|1.6e-07^Ank_2|173-246|1.1e-16^Ank_5|175-205|3.7e-06^Ank|182-213|2.6e-10^Ank_3|182-210|5.6e-08^Ank_4|201-228|8.1e-05^Ank_5|202-255|1.3e-12^Ank|216-247|1.2e-08^Ank_3|216-245|1.1e-06^Ank_2|220-309|1.4e-18^ADDz_Dnmt3b|231-249|0.0067^Ank_4|232-264|2.6e-08^Ank|249-281|0.00031^Ank_3|249-263|0.038^Ank_4|268-296|8.2e-08^Ank_5|275-295|4.2e-06^Ank|282-309|8.6e-10^Ank_3|282-308|1.5e-07^Ank_4|290-336|2.2e-05^Ank_5|313-336|0.048^Ank|315-346|3.6e-07^Ank_3|315-343|2.3e-05^Ank_4|319-369|7.5e-14^Ank_2|320-410|2.7e-23^Ank_5|339-389|3.4e-11^Ank_3|348-376|7.6e-07^Ank|349-380|3.2e-11^Ank_4|353-401|2.3e-16^ADDz_Dnmt3b|363-373|0.76^Ank_3|381-409|1.2e-06^Ank|382-412|6e-08^Ank_2|386-469|9.4e-17^ADDz_Dnmt3b|395-407|0.13^Ank_4|401-436|3.2e-08^Ank_5|406-455|2.8e-09^Ank|415-447|5.5e-09^Ank_3|415-442|1.4e-05^Ank_4|430-466|4.1e-06^Ank|449-468|0.013^Ank_3|449-468|0.071^Ank_2|493-557|7.3e-16^Ank_5|495-534|4.1e-08^Ank|496-524|2.7e-06^Ank_4|496-547|3.4e-16^Ank_3|496-516|5.4e-05^Ank_5|518-557|5.6e-06^Ank|527-557|1.1e-10^Ank_3|527-553|7.3e-07^ADDz_Dnmt3b|540-556|0.006^Ank_5|561-584|6.9e-06^Ank|562-591|1e-08^Ank_4|562-614|1.9e-12^Ank_3|562-583|2.5e-05^Ank_2|565-660|2.9e-24^ADDz_Dnmt3b|575-587|1.4^Ank_5|587-635|9.6e-11^Ank|596-628|3.1e-11^Ank_3|596-625|5.6e-07^Ank_4|609-646|2e-09^ADDz_Dnmt3b|611-627|2.1^Ank|630-660|1.3e-08^Ank_3|630-656|2.2e-05^Ank_4|634-679|4.8e-11^ADDz_Dnmt3b|644-655|0.58^Ank_5|649-683|8.9e-06^Ank_2|659-711|2.4e-10^Ank|663-691|1.3e-06^Ank_3|663-684|0.00017^Ank_4|683-711|0.00015^Ank_5|691-713|0.0038^Ank|699-711|0.00016^Ank_3|699-711|0.00062 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.61Mb] 26 18 26 18 ONLY_REF_SPLICE YES_LDAS 0.4266 GT 1.7819 AG 1.6402 ENST00000617312.4 1-1673 ENST00000451422.1 15-2169 chr3|+|[0]15003915-15003986[2]|[0]15004557-15004613[2]|[0]15013589-15013789[2]|[0]15016152-15016254[0]|[1]15020753-15020932[0]|[1]15023200-15023347[1]|[2]15024115-15024208[2]|[0]15028586-15028719[1]|[2]15030275-15030452[2]|[0]15032379-15032500[1]|[2]15034670-15034809[0]|[1]15038000-15038137[0]|[1]15039122-15039227[1]<==>chr3|-|[2]15678317-15678354[1]|[0]15685226-15685445[0]|[2]15686002-15686119[2]|[1]15686222-15686309[1]|[0]15690019-15690220[0]|[2]15694739-15694813[0]|[2]15695188-15695214[0]|[2]15696134-15696245[2]|[1]15707924-15708064[2]|[1]15709668-15709736[2]|[1]15711211-15711274[1]|[0]15712140-15712222[2]|[1]15713527-15713641[1]|[0]15714578-15714656[0]|[2]15720915-15721127[0]|[2]15724382-15724524[1]|[0]15735410-15735497[0]|[2]15737033-15737233[0]|[2]15766234-15766312[2] atgaccagcccctccccacgcatccagataatctccaccgactctgctgtagcctcacctcagcgcattcagggctctgaacctgcctctggcccattgagtgttttcacatctttgaacaaagagaagattgtcacagaccagcagacaggacagaaaatccagatagtcaccgcagtggacgcctccggatcccccaaacagcagttcatcctgaccagcccagatggagctggaactgggaaggtgatcctggcttccccagagacatccagcgccaagcaactcatattcaccacctcagacaacctcgtccctggcaggatccagattgtcacggattctgcctctgtggagcgtttactggggaagacggacgtccagcggccccaggtggtagagtactgtgtggtctgtggcgacaaagcctccggccgtcactatggggctgtcagttgtgaaggttgcaaaggtttcttcaaaaggagtgtgaggaaaaatttgacctacagctgccggagcaaccaagactgcatcatcaataaacatcaccggaaccgctgtcagttttgccggctgaaaaaatgcttagagatgggcatgaaaatggaatctgtgcagagtgaacggaagcccttcgatgtgcaacgggagaaaccaagcaattgtgctgcttcaactgagaaaatctatatccggaaagacctgagaagtcccctgatagctactcccacgtttgtggcagacaaagatggagcaagacaaacaggtcttcttgatccagggatgcttgtgaacatccagcagcctttgatacgtgaggatggtacagttctcctggccacggattctaaggctgaaacaagccagggagctctgggcacactggcaaatgtagtgacctcccttgccaacctaagtgaatctttgaacaacggtgacacttcagaaatccagccagaggaccagtctgcaagtgagataactcgggcatttgataccttagctaaagcacttaataccacagacagctcctcttctccaagcttggcagatgggatagacaccagtggaggagggagcatccacgtcatcagcagagaccagtcgacacccatcattgaggttgaaggccccctcctttcagacacacacgtcacatttaagctaacaatgcccagtccaatgccagagtacctcaacgtgcactacatctgtgagtctgcatcccgtctgcttttcctctcaatgcactgggctcggtcaatcccagcctttcaggcacttgggcaggactgcaacaccagccttgtgcgggcctgctggaatgagctcttcaccctcggcctggcccagtgtgcccaggtcatgagtctctccaccatcctggctgccattgtcaaccacctgcagaacagcatccaggaagataaactttctggtgaccggataaagcaagtcatggagcacatctggaagctgcaggagttctgtaacagcatggcgaagctggatatagatggctatgagtatgcataccttaaagctatagttctctttagccccgatcatccaggtttgaccagcacaagccagattgaaaaattccaagaaaaggcacagatggagttgcaggactatgttcagaaaacctactcagaagacacctaccgGACAATGAAAAGCGAACCCCATTGCACGCCGCAGCTTACCTTGGAGATGCAGAAATCATTGAACTTCTTATTTTATCTGGAAGCAGTTCAGGTACTTTTGAAGCATTCTGCAGATGTTAATGCTCGAGACAAAAATTGGCAAACCCCTTTACATATAGCTGCTGCTAATAAAGCTGTAAAGTGTGCTGAAGCTTTGGTACCTCTTCTGAGTAATGTAAACGTATCTGATCGAGCAGGGAGGACTGCATTACATCATGCAGCTTTCAGTGGACATGGTGAGATGGTCAAACTACTCTTGTCTAGAGGTGCCAATATTAATGCTTTTGACAAGAAAGATAGGCGTGCTATCCATTGGGCAGCATATATGGGTCACATTGAAGTAGTGAAATTGCTTGTGTCGCATGGAGCTGAAGTGACATGCAAGGATAAAAAGTCTTATACACCTCTTCATGCAGCAGCCTCTAGTGGAATGATCAGCGTAGTCAAGTACCTTCTAGATCTTGGAGTTGATATGAATGAACCAAATGCCTATGGAAATACACCTCTTCATGTAGCCTGCTATAATGGACAAGATGTTGTAGTGAATGAACTTATAGACTGTGGTGCTATTGTGAATCAAAAGAATGAAAAAGGATTTACTCCTTTGCACTTTGCTGCTGCATCAACACATGGAGCATTGTGTTTAGAGCTTCTAGTTGGCAATGGGGCCGATGTCAATATGAAGAGTAAAGATGGGAAAACCCCACTACACATGACTGCTCTCCACGGTAGATTCTCCCGATCACAAACCATTATCCAGAGTGGAGCTGTAATCGACTGTGAGGATAAGAATGGAAATACCCCTTTGCACATAGCAGCACGGTATGGCCATGAGCTGCTGATCAACACTCTTATTACAAGTGGTGCTGACACTGCAAAGCGTGGCATACATGGAATGTTCCCCCTCCATTTGGCAGCCTTAAGCGGCTTTTCAGATTGCTGCAGAAAACTTCTTTCTTCAGGATTTGATATAGATACCCCAGATGATTTTGGCAGGACTTGTCTACATGCAGCTGCAGCTGGAGGGAATTTGGAGTGCCTAAACCTTCTGCTGAATACTGGTGCAGACTTTAATAAAAAGGACAAATTTGGGAGATCTCCACTGCACTACGCTGCTGCCAACTGCAATTACCAGTGCCTGTTTGCTCTTGTGGGATCAGGAGCAAGTGTGAATGACCTTGATGAAAGAGGCTGCACACCCCTGCACTATGCAGCTACATCAGACACAGATGGCAAGTGCCTGGAATACTTATTAAGAAACGATGCAAATCCAGGGATCCGTGATAAGCAAGGATACAACGCAGTTCATTATTCAGCTGCTTATGGTCACCGTCTATGTCTTCAGCTGATTGCAAGTGAAACTCCTCTAGATGTTTTAATGGAAACCTCAGGAACAGACATGCTGAGTGATTCAGATAATAGAGCAACAATAAGCCCTTTACACTTGGCTGCCTATCATGGTCACCATCAAGCACTGGAAGTGTTGGTACAGTCTTTGTTAGATCTTGATGTCAGAAATAGTAGTGGAAGAACACCCCTAGATCTTGCAGCTTTTAAGGGCCATGTTGAATGTGTGGATGTACTCATTAATCAGGGAGCCTCAATCTTAGTAAAAGATTACATTTTGAAGAGGACACCTATTCATGCAGCAGCAACAAATGGTCATTCAGAATGCTTACGGCTATTAATAGGAAATGCAGAACCACAGAATGCAGTGGATATTCAAGATGGAAATGGACAGACGCCTCTGATGCTATCTGTTCTCAACGGGCACACAGACTGTGTTTACTCATTGCTGAACAAAGGAGCAAATGTAGATGCCAAAGATAAGTGGGGAAGGACAGCGTTGCATAGAGGGGCAGTTACAGGCCATGAAGAATGTGTAGATGCATTACTTCAACATGGTGCTAAGTGCTTACTTCGGGATAGCAGGGGCCGGACGCCTATACACCTGTCTGCTGCCTGTGGACACATTGGTGTTCTTGGAGCCCTTTTGCAGTCAGCAGCATCTATGGATGCAAATCCAGCCACAGCAGACAATCATGGATATACGGCACTTCACTGGGCTTGCTACAATGAACTCCTCTCCATGCAGCCGCCTTCACAGACCATGTAG MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRTMKSEPHCTPQLTLEMQKSLNFLFYLEAVQVLLKHSADVNARDKNWQTPLHIAAANKAVKCAEALVPLLSNVNVSDRAGRTALHHAAFSGHGEMVKLLLSRGANINAFDKKDRRAIHWAAYMGHIEVVKLLVSHGAEVTCKDKKSYTPLHAAASSGMISVVKYLLDLGVDMNEPNAYGNTPLHVACYNGQDVVVNELIDCGAIVNQKNEKGFTPLHFAAASTHGALCLELLVGNGADVNMKSKDGKTPLHMTALHGRFSRSQTIIQSGAVIDCEDKNGNTPLHIAARYGHELLINTLITSGADTAKRGIHGMFPLHLAALSGFSDCCRKLLSSGFDIDTPDDFGRTCLHAAAAGGNLECLNLLLNTGADFNKKDKFGRSPLHYAAANCNYQCLFALVGSGASVNDLDERGCTPLHYAATSDTDGKCLEYLLRNDANPGIRDKQGYNAVHYSAAYGHRLCLQLIASETPLDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLLDLDVRNSSGRTPLDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQNAVDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGANVDAKDKWGRTALHRGAVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAASMDANPATADNHGYTALHWACYNELLSMQPPSQTM* FALSE FALSE NA NA TRUE hsa-mir-3134 chr3:15697298-15697371:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28608 TP73::PACSIN2 ENSG00000078900.15::ENSG00000100266.19 NCIH1092 SRR8615331 SRR8652135 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 241 TRUE 487 TRUE 168 TP73 ENSG00000078900.15 protein_coding + + chr1:3652516-3736201:+ chr1:3683180:+ chr1:3569080-3652765:+ chr1:3599744:+ PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:42893613:- chr22:43231418-43411155:- chr22:43289619:- chr1:3697893 chr22:42979695 NA NA chr1:3614457 chr22:43375701 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame P53-PARTIAL|118-186~|5.5e-69 FCH-PARTIAL|~61-98|1.3e-22^Sec10_N-PARTIAL|~61-72|0.52^DegS|96-126|0.13^SH3BP5|104-217|4e-05^FCH|136-159|3.2^Sec10_N|146-154|1.7^NPF|156-184|1.6^FCH|186-215|0.35^Sec10_N|188-236|9.8e-06^DegS|188-267|2.9e-05^FCH|262-281|0.94^NPF|351-428|3.7e-08^SH3_2|431-483|6.3e-11^SH3_1|432-479|8.3e-19^SH3_9|433-483|2.8e-19 ["TP73:Oncogene"];["PACSIN2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr22] 12 16 12 1.81 ONLY_REF_SPLICE YES_LDAS 0.1338 GT 1.9329 AG 1.9086 ENST00000357733.7 1-186 ENST00000263246.8 61-1461 chr1|+|[0]3682366-3682430[1]|[2]3683060-3683180[2]<==>chr22|-|[2]42871357-42871469[1]|[0]42876137-42876333[2]|[1]42876888-42877010[2]|[1]42879048-42879169[0]|[2]42882184-42882304[2]|[1]42884386-42884561[0]|[2]42888643-42888798[0]|[2]42890947-42891182[1]|[0]42893457-42893613[0] atggcccagtccaccgccacctcccctgatgggggcaccacgtttgagcacctctggagctctctggaaccagacagcacctacttcgaccttccccagtcaagccgggggaataatgaggtggtgggcggaacggattccagcatggacgtcttccacctggagggcatgactacatctgtcatgGTCGGGAACTACAAGCGGACTGTGAAGCGGATCGACGATGGCCACCGCCTGTGCAGCGACCTCATGAACTGCCTGCATGAGCGGGCGCGCATCGAGAAGGCGTATGCGCAGCAGCTCACTGAGTGGGCCCGGCGCTGGAGGCAGCTCGTGGAGAAAGGGCCCCAGTACGGGACCGTGGAGAAGGCCTGGATGGCCTTCATGTCCGAGGCAGAGAGGGTGAGCGAGCTGCACCTCGAGGTGAAGGCCTCACTGATGAACGATGACTTCGAGAAGATCAAGAACTGGCAGAAGGAAGCCTTTCACAAGCAGATGATGGGCGGCTTCAAGGAGACCAAGGAAGCTGAGGACGGCTTTCGGAAGGCACAGAAGCCCTGGGCCAAGAAGCTGAAAGAGGTAGAAGCAGCAAAGAAAGCCCACCATGCAGCGTGCAAAGAGGAGAAGCTGGCTATCTCACGAGAAGCCAACAGCAAGGCAGACCCATCCCTCAACCCTGAACAGCTCAAGAAATTGCAAGACAAAATAGAAAAGTGCAAGCAAGATGTTCTTAAGACCAAAGAGAAGTATGAGAAGTCCCTGAAGGAACTCGACCAGGGCACACCCCAGTACATGGAGAACATGGAGCAGGTGTTTGAGCAGTGCCAGCAGTTCGAGGAGAAACGCCTTCGCTTCTTCCGGGAGGTTCTGCTGGAGGTTCAGAAGCACCTAGACCTGTCCAATGTGGCTGGCTACAAAGCCATTTACCATGACCTGGAGCAGAGCATCAGAGCAGCTGATGCAGTGGAGGACCTGAGGTGGTTCCGAGCCAATCACGGGCCGGGCATGGCCATGAACTGGCCGCAGTTTGAGGAGTGGTCCGCAGACCTGAATCGAACCCTCAGCCGGAGAGAGAAGAAGAAGGCCACTGACGGCGTCACCCTGACGGGCATCAACCAGACAGGCGACCAGTCTCTGCCGAGTAAGCCCAGCAGCACCCTTAATGTCCCGAGCAACCCCGCCCAGTCTGCGCAGTCACAGTCCAGCTACAACCCCTTCGAGGATGAGGACGACACGGGCAGCACCGTCAGTGAGAAGGACGACACTAAGGCCAAAAATGTGAGCAGCTACGAGAAGACCCAGAGCTATCCCACCGACTGGTCAGACGATGAGTCTAACAACCCCTTCTCCTCCACGGATGCCAATGGGGACTCGAATCCATTCGACGACGACGCCACCTCGGGGACGGAAGTGCGAGTCCGGGCCCTGTATGACTATGAGGGGCAGGAGCATGATGAGCTGAGCTTCAAGGCTGGGGATGAGCTGACCAAGATGGAGGACGAGGATGAGCAGGGCTGGTGCAAGGGACGCTTGGACAACGGGCAAGTTGGCCTATACCCGGCAAATTATGTGGAGGCGATCCAGTGA MAQSTATSPDGGTTFEHLWSSLEPDSTYFDLPQSSRGNNEVVGGTDSSMDVFHLEGMTTSVMVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28620 FBXL20::CDK12 ENSG00000108306.13::ENSG00000167258.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 248 FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39343180:- chr17:37408916-37558776:- chr17:37499433:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39509705:+ chr17:37617739-37723812:+ chr17:37665958:+ chr17:39329207,chr17:39329549,chr17:39328954,chr17:39329009,chr17:39329214,chr17:39329220 chr17:39502038,chr17:39502407,chr17:39502097,chr17:39502215,chr17:39502031,chr17:39502025 NA NA chr17:37485460,chr17:37485802,chr17:37485207,chr17:37485262,chr17:37485467,chr17:37485473 chr17:37658291,chr17:37658660,chr17:37658350,chr17:37658468,chr17:37658284,chr17:37658278 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame F-box-like|29-72|1.8e-19^F-box|29-68|3.7e-12^F-box_4|29-56|1e-05^LRR_4-PARTIAL|95-110~|3.9e-05^LRR_6-PARTIAL|95-110~|0.36^LRR_1|95-103|0.7 none ["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.06Mb];LOCAL_INVERSION:-:+:[58988] 228 74 228 74 ONLY_REF_SPLICE YES_LDAS 3.1791 GT 1.9899 AG 1.9219 ENST00000577399.5 1-110 ENST00000447079.6 2610-4473 chr17|-|[1]39343180-39343241[0]|[2]39402173-39402220[0]<==>chr17|+|[2]39509705-39509761[1]|[2]39511529-39511630[1]|[2]39515731-39515808[1]|[2]39517440-39517556[1]|[2]39519956-39520087[1]|[2]39524674-39524885[0]|[1]39525864-39526316[0]|[1]39530604-39531316[2] atggctccgagcagggaccgcctgctgcactttgggttcaaggcgacaatgttctcaaatagtgatgaagctgtaatcaataaaaaacttcccaaagaactcctgttacgTGGGCAAATCAAACTAGCAGATTTTGGACTTGCTCGGCTCTATAACTCTGAAGAGAGTCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGAGCTGTGGATGTATTCTTGGGGAACTATTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGAACTGGCTCAGCTAGAACTGATCAGCCGACTTTGTGGTAGCCCTTGTCCAGCTGTGTGGCCTGATGTTATCAAACTGCCCTACTTCAACACCATGAAACCGAAGAAGCAATATCGAAGGCGTCTACGAGAAGAATTCTCTTTCATTCCTTCTGCAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACAGAGCGACTTCCTTAAAGATGTCGAACTCAGCAAAATGGCTCCTCCAGACCTCCCCCACTGGCAGGATTGCCATGAGTTGTGGAGTAAGAAACGGCGACGTCAGCGACAAAGTGGTGTTGTAGTCGAAGAGCCACCTCCATCCAAAACTTCTCGAAAAGAAACTACCTCAGGGACAAGTACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCCTGCTCCTGGCAAGGTGGAGTCTGGGGCTGGGGATGCAATAGGCCTTGCTGACATCACACAACAGCTGAATCAAAGTGAATTGGCAGTGTTATTAAACCTGCTGCAGAGCCAAACCGACCTGAGCATCCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAGATGCAGCAGCAGCTGGAAGCCCTGAACCAATCCATCAGTGCCCTGACGGAAGCTACTTCCCAGCAGCAGGACTCAGAGACCATGGCCCCAGAGGAGTCTTTGAAGGAAGCACCCTCTGCCCCAGTGATCCTGCCTTCAGCAGAACAGACGACCCTTGAAGCTTCAAGCACACCAGCTGACATGCAGAATATATTGGCAGTTCTCTTGAGTCAGCTGATGAAAACCCAAGAGCCAGCAGGCAGTCTGGAGGAAAACAACAGTGACAAGAACAGTGGGCCACAGGGGCCCCGAAGAACTCCCACAATGCCACAGGAGGAGGCAGCAGCATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAGGGTCAGTGCAGTTTCCAGGGGACCAGGACCTCCGTTTTGCCAGGGTCCCCTTAGCGTTACACCCGGTGGTCGGGCAACCATTCCTGAAGGCTGAGGGAAGCAGCAATTCTGTGGTACATGCAGAGACCAAATTGCAAAACTATGGGGAGCTGGGGCCAGGAACCACTGGGGCCAGCAGCTCAGGAGCAGGCCTTCACTGGGGGGGCCCAACTCAGTCTTCTGCTTATGGAAAACTCTATCGGGGGCCTACAAGAGTCCCACCAAGAGGGGGAAGAGGGAGAGGAGTTCCTTACTAA MAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVEEPPPSKTSRKETTSGTSTEPVKNSSPAPPQPAPGKVESGAGDAIGLADITQQLNQSELAVLLNLLQSQTDLSIPQMAQLLNIHSNPEMQQQLEALNQSISALTEATSQQQDSETMAPEESLKEAPSAPVILPSAEQTTLEASSTPADMQNILAVLLSQLMKTQEPAGSLEENNSDKNSGPQGPRRTPTMPQEEAAACPPHILPPEKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRPMEYSTRPRPNRTYGNTDGPETGFSAIDTDERNSGPALTESLVQTLVKNRTFSGSLSHLGESSSYQGTGSVQFPGDQDLRFARVPLALHPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPGTTGASSSGAGLHWGGPTQSSAYGKLYRGPTRVPPRGGRGRGVPY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast,Oesophagus,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 28621 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 247 TRUE 508 TRUE 173 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60042759:- chr10:61786056-62493248:- chr10:61802517:- chr10:59875637 chr10:60048573 NA NA chr10:61635395 chr10:61808331 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF2046-PARTIAL|49-303~|6.6e-156^DUF1192|52-69|0.0025^DUF1192|143-167|0.11^DUF1192|256-280|0.00072^DUF1192-PARTIAL|300-303~|0.34 none ["CCDC6:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.12Mb] 191 129 191 92.63 ONLY_REF_SPLICE YES_LDAS 2.9857 GT 1.8892 AG 1.8062 ENST00000263102.7 1-303 ENST00000467420.7 5311-5379 chr10|-|[2]59906122-59906424[0]<==>chr10|-|[2]60042691-60042759[0] atggcggacagcgccagcgagagcgacacggacggggcggggggcaacagcagcagctcggccgccatgcagtcgtcctgctcgtcgacctcgggcggcggcggtggcggcgggggaggcggcggcggtgggaagtcggggggcattgtcatctcgccgttccgcctggaggagctcaccaaccgcctggcctcgctgcagcaagagaacaaggtgctgaagatagagctggagacctacaaactgaagtgcaaggcactgcaggaggagaaccgcgacctgcgcaaagccagcgtgaccatcCAGGGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAGAAGAGCCACTCGTAA MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIQGEGFKVKTKKEIRHVEKKSHS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|TRUE|FALSE|TRUE|FALSE,TRUE|TRUE,TRUE|FALSE|TRUE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28622 DOCK5::CDCA2 ENSG00000147459.18::ENSG00000184661.14 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 249 FALSE NA FALSE NA DOCK5 ENSG00000147459.18 protein_coding + + chr8:25184689-25418082:+ chr8:25184951:+ chr8:25042204-25275598:+ chr8:25042466:+ CDCA2 ENSG00000184661.14 protein_coding + + chr8:25459199-25507911:+ chr8:25503373:+ chr8:25316715-25365427:+ chr8:25360889:+ chr8:25240001 chr8:25493372 NA NA chr8:25097517 chr8:25350888 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SH3_2-PARTIAL|12-43~|3.7e-12^SH3_1-PARTIAL|14-43~|1.9e-13^SH3_9-PARTIAL|15-43~|1.7e-11 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.04Mb];NEIGHBORS[40915] 143 56 143 56 ONLY_REF_SPLICE YES_LDAS 2.0948 GT 1.7465 AG 1.7819 ENST00000481100.5 1-43 ENST00000380665.3 1627-3027 chr8|+|[0]25184909-25184951[0]<==>chr8|+|[0]25503373-25503544[0]|[1]25506510-25507738[2] atggcccgctggatcccgaccaagaggcagaagtacggggttgGTTTTAAAAAGTTGCAGAAAGAAGAAAGGAAAGGGAAAGAAAAGTGTTCAGAAATCTTTATATGGGGAAAGAGACATTGCTTCTAAGAAGCCCCTCCTCAGTCCTATTCCCGAGCTGCCTGAAGTCCCTGAGATGACACCTTCCATTCCGAGCATCCGAAGACTGGGTTCAGGTTATTTCAGTTCAAATGGCAAACTGGAAGAAGTGAAGACTCCTAAAAATCCAGTGAAAAGAAAGGATCTTTTGCGTCATGACCCAGATTTGCATATGCATCAAGGCTATGATAAATATGATGTCTCTGAATTCTGCTCTTATATAAAAAGTTCCTCATCGCTTGGCAATGCTACTTCTGATGAAGATCCAAATACAAATATAATGAACATTAATGAAAATAAAAATATTCCAAAAGCAAAAAATAAGTCAGAAAGTGAAAATGAACCAAAAGCTGGAACTGACAGTCCTGTTTCTTGTGCTTCTGTAACTGAAGAACGTGTGGCATCAGATAGTCCCAAACCTGCTCTGACCCTGCAGCAGGGTCAAGAATTTTCTGCTGGTGGTCAAAATGCAGAAAACCTTTGTCAGTTCTTTAAAATTTCACCAGATTTAAACATAAAGTGTGAAAGAAAGGATGACTTCTTAGGAGCTGCAGAAGGAAAACTGCAATGCAATCGTTTAATGCCTAATTCACAAAAAGACTGTCATTGTTTAGGAGATGTCTTAATTGAAAATACGAAAGAATCTAAAAGCCAGAGTGAGGATTTGGGAAGAAAACCCATGGAAAGTAGCAGTGTTGTGAGTTGCAGAGACAGGAAAGATAGAAGACGTTCCATGTGTTATTCTGATGGTCGAAGTTTACATTTGGAAAAAAATGGAAATCACACACCATCCTCCAGTGTGGGCAGCTCTGTAGAAATTAGTTTAGAAAATTCTGAACTGTTTAAAGATTTGTCTGATGCCATTGAGCAAACCTTTCAGAGGAGAAATAGTGAAACCAAAGTGCGACGTAGCACGAGGCTACAGAAGGATTTAGAAAACGAAGGTCTTGTATGGATTTCACTTCCACTTCCTTCCACTTCCCAAAAAGCCAAAAGAAGAACAATATGTACATTTGACAGCAGTGGATTTGAAAGTATGTCTCCCATAAAAGAAACTGTGTCCTCCAGACAAAAACCGCAGATGGCACCTCCCGTCTCAGATCCAGAAAACAGCCAGGGCCCTGCTGCTGGTTCTTCCGATGAACCTGGTAAGAGGAGGAAGAGCTTTTGTATATCTACACTTGCAAATACTAAAGCCACTTCCCAGTTCAAAGGCTACCGGAGAAGATCCTCTCTTAATGGGAAGGGAGAGAGCTCTCTGACTGCCTTGGAAAGGATTGAACATAATGGAGAAAGAAAGCAGTAA MARWIPTKRQKYGVGFKKLQKEERKGKEKCSEIFIWGKRHCF*EAPPQSYSRAA*SP*DDTFHSEHPKTGFRLFQFKWQTGRSEDS*KSSEKKGSFAS*PRFAYASRL**I*CL*ILLLYKKFLIAWQCYF**RSKYKYNEH**K*KYSKSKK*VRK*K*TKSWN*QSCFLCFCN*RTCGIR*SQTCSDPAAGSRIFCWWSKCRKPLSVL*NFTRFKHKV*KKG*LLRSCRRKTAMQSFNA*FTKRLSLFRRCLN*KYERI*KPE*GFGKKTHGK*QCCELQRQER*KTFHVLF*WSKFTFGKKWKSHTILQCGQLCRN*FRKF*TV*RFV*CH*ANLSEEK**NQSAT*HEATEGFRKRRSCMDFTSTSFHFPKSQKKNNMYI*QQWI*KYVSHKRNCVLQTKTADGTSRLRSRKQPGPCCWFFR*TW*EEEELLYIYTCKY*SHFPVQRLPEKILS*WEGRELSDCLGKD*T*WRKKAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28623 MED1::IKZF3 ENSG00000125686.12::ENSG00000161405.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 253 FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39792933:- chr17:37913971-38020565:- chr17:37949186:- chr17:39434350,chr17:39434350,chr17:39434352,chr17:39434352 chr17:39795607,chr17:39795598,chr17:39795696,chr17:39795606 NA NA chr17:37590603,chr17:37590603,chr17:37590605,chr17:37590605 chr17:37951860,chr17:37951851,chr17:37951949,chr17:37951859 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Med1|13-54|0.75^Med1|60-426|3.2e-56^DUF34_NIF3|60-147|1.5e-05 zf-C2H2_11|65-70|5^C1_2|70-117|0.00041^zf-C2HE|81-102|2.6^zf-TFIIB|83-90|3.9^zf-H2C2_2|85-92|0.96^zf-C2H2_6|85-106|0.00015^zf-C2H2|86-106|0.0018^zf-C2H2_4|86-106|0.01^zf-C2H2_11|86-91|6.1^zf-H2C2_2|99-123|1.1e-11^zf-RING_7|107-119|0.2^GAGA|107-139|0.00029^zf-C2HE|109-134|0.0015^Actin_micro|111-155|0.016^C1_2|111-147|0.76^zf-C2H2|112-134|2.7e-09^zf-C2H2_4|112-134|1.4e-07^zf-C2H2_11|112-131|2.9e-06^zf-H2C2_5|112-135|9.1e-06^zf-C2H2_6|112-121|0.011^zf_UBZ|112-122|0.05^zf-TFIIB|113-118|0.34^zf-H2C2_2|129-148|1.1e-08^C1_2|132-173|0.93^GAGA|136-163|0.46^zf-C2HE|137-162|0.004^zf-C2H2|140-162|7.3e-06^zf-C2H2_4|140-162|0.00056^zf-C2H2_11|140-145|3^zf-H2C2_5|140-163|0.00034^zf-C2H2_6|140-162|0.00029^zf-H2C2_2|155-179|1.1e-10^zf-RING_7|162-175|0.025^C1_2|163-178|0.029^GAGA|164-188|0.61^zf-C2HE|165-186|1.2^zf-C2H2|168-187|6.4e-07^zf-C2H2_4|168-189|5.5e-05^zf-C2H2_11|168-186|0.07^zf-H2C2_5|168-173|1.7^zf-C2H2_6|168-189|0.033^zf_UBZ|168-187|0.015^zf-C2HC_2|169-191|0.00011^zf-C2H2_11|244-248|1.9^GAGA|386-401|8.7^zf-TFIIB|400-430|0.00048^zf-H2C2_2|416-427|0.087^zf-RING_7|416-424|0.041^C1_2|416-425|0.49^zf-C2H2_6|417-427|0.26^zf_UBZ|417-423|1.2^zf-C2H2|418-437|0.071^zf-C2H2_4|418-437|0.0049^zf-C2H2_11|418-427|0.75^zf-H2C2_5|418-423|3.3^zf-C2HC_2|420-423|6.5^zf-H2C2_2|436-454|0.00027^C1_2|440-456|8^zf-C2HE|444-454|0.28^Actin_micro|445-467|0.025^zf-C2H2|446-467|0.00026^zf-C2H2_4|446-466|0.0022^zf-H2C2_5|446-465|0.052^zf-C2H2_6|446-452|1.6^zf-C2H2_11|447-452|6.1 ["IKZF3:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.31Mb] 132 45 132 45 ONLY_REF_SPLICE YES_LDAS 1.8632 GT 1.9656 AG 1.7465 ENST00000394287.7 1-428 ENST00000535189.5 62-1428 chr17|-|[1]39439165-39439193[0]|[2]39440386-39440518[2]|[1]39440623-39440677[1]|[0]39443550-39443628[0]|[2]39447798-39447904[1]|[0]39451038-39451062[0]<==>chr17|-|[2]39765790-39766493[1]|[0]39777651-39777767[1]|[0]39788258-39788374[1]|[0]39791416-39791583[1]|[0]39792673-39792933[1] atgaaagctcagggggaaaccgaggagtcagaaaagctgagtaagatgagttctctcctggaacggctccatgcaaaatttaaccaaaatagaccctggagtgaaaccattaagcttgtgcgtcaagtcatggagaagagggttgtgatgagttctggagggcatcaacatttggtcagctgtttggagacattgcagaaggctctcaaagtaacatctttaccagcaatgactgatcgtttggagtccatagcaagacagaatggactgggctctcatctcagtgccagtggcactgaatgttacatcacgtcagatatgttctatgtggaagtgcagttagatcctgcaggacagctttgtgatgtaaaagtggctcaccatggggagaatcctgtgagctgtccggagcttgtacagcagctaagATGATTCAATGAAAGTGAAAGATGAATACAGTGAAAGAGATGAGAATGTTTTAAAGTCAGAACCCATGGGAAATGCAGAAGAGCCTGAAATCCCTTACAGCTATTCAAGAGAATATAATGAATATGAAAACATTAAGTTGGAGAGACATGTTGTCTCATTCGATAGTAGCAGGCCAACCAGTGGAAAGATGAACTGCGATGTGTGTGGATTATCCTGCATCAGCTTCAATGTCTTAATGGTTCATAAGCGAAGCCATACTGGTGAACGCCCATTCCAGTGTAATCAGTGTGGGGCATCTTTTACTCAGAAAGGTAACCTCCTCCGCCACATTAAACTGCACACAGGGGAAAAACCTTTTAAGTGTCACCTCTGCAACTATGCATGCCAAAGAAGAGATGCGCTCACGGGGCATCTTAGGACACATTCTGTGGAGAAACCCTACAAATGTGAGTTTTGTGGAAGGAGTTACAAGCAGAGAAGTTCCCTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGAGCACTGACCCAGGGGACACTGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTGGTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCATGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAAAAGAAAAGCATCCACCTTCCAGAGAAGAGCGTGCCTTCTGAGAGAGGCCTCTCTCCCAACAATAGTGGCCACGACTCCACGGACACTGACAGCAACCATGAAGAACGCCAGAATCACATCTATCAGCAAAATCACATGGTCCTGTCTCGGGCCCGCAATGGGATGCCACTTCTGAAGGAGGTTCCCCGCTCTTACGAACTCCTCAAGCCCCCGCCCATCTGCCCAAGAGACTCCGTCAAAGTGATCAACAAGGAAGGGGAGGTGATGGATGTGTATCGGTGTGACCACTGCCGCGTCCTCTTCCTGGACTATGTGATGTTCACGATTCACATGGGCTGCCACGGCTTCCGTGACCCTTTCGAGTGTAACATGTGTGGATATCGAAGCCATGATCGGTATGAGTTCTCGTCTCACATAGCCAGAGGAGAACACAGAGCCCTGCTGAAGTGA MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLR*FNESER*IQ*KR*ECFKVRTHGKCRRA*NPLQLFKRI**I*KH*VGETCCLIR**QANQWKDELRCVWIILHQLQCLNGS*AKPYW*TPIPV*SVWGIFYSER*PPPPH*TAHRGKTF*VSPLQLCMPKKRCAHGAS*DTFCGETLQM*VLWKELQAEKFP*GAQGALPYISSEH*PRGHCKCGGKTHQSRDGK*KSSRTGQISKQCGKTKKLNASEIHW*EAPLL*CQL*FKLHV*ERE*AHTDPHDGPSHQ*RHQLSWRRSPAPLGPDTACSHLGDGSSYQQHVSHSPHPG*DVKRCPSRAGKEKHPPSREERAF*ERPLSQQ*WPRLHGH*QQP*RTPESHLSAKSHGPVSGPQWDATSEGGSPLLRTPQAPAHLPKRLRQSDQQGRGGDGCVSV*PLPRPLPGLCDVHDSHGLPRLP*PFRV*HVWISKP*SV*VLVSHSQRRTQSPAEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 28626 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 251 TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48170967:- chr16:48199684-48281479:- chr16:48204878:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.11Mb] 97 61 97 59.27 ONLY_REF_SPLICE YES_LDAS 1.645 GT 1.7232 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28628 PDE7A::ARMC1 ENSG00000205268.11::ENSG00000104442.10 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 254 FALSE NA FALSE NA PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65841371:- chr8:66626569-66754557:- chr8:66753606:- ARMC1 ENSG00000104442.10 protein_coding - - chr8:65602458-65634217:- chr8:65613433:- chr8:66514693-66546452:- chr8:66525668:- chr8:65835803,chr8:65835807 chr8:65618421,chr8:65618422 NA NA chr8:66748038,chr8:66748042 chr8:66530656,chr8:66530657 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.08Mb];NEIGHBORS[83293] 83 22 83 22 ONLY_REF_SPLICE YES_LDAS 1.1053 GT 1.8892 AG 1.8323 ENST00000401827.8 1-138 ENST00000276569.8 276-849 chr8|-|[2]65841371-65841508[0]<==>chr8|-|[2]65604394-65604585[0]|[2]65605263-65605337[0]|[2]65605422-65605538[0]|[2]65613244-65613433[2] atggaagtgtgttaccagctgccggtactgcccctggacaggccggtcccccagcacgtcctcagccgccgaggagccatcagcttcagctccagctccgctctcttcggctgccccaatccccggcagctctctcagAACTACAACTCCAGGAGAAACAAAACTTCTGGCCTCTGAAATCTATGACATTCTTCAGTCCTCCAATATGGCAGATGGTGATAGTTTTAATGAGATGAATTCACGTCGAAGGAAAGCTCAATTTTTTCTGGGAACTACAAACAAACGTGCCAAAACAGTGGTTTTGCATATAGATGGCCTTGATGATACGTCTCGGAGAAATCTATGTGAAGAGGCTTTGTTAAAAATTAAAGGTGTTATTAGCTTTACTTTTCAAATGGCTGTTCAAAGGTGTGTGGTGCGAATCCGTTCAGATTTGAAAGCTGAGGCTTTGGCATCAGCAATAGCATCAACCAAGGTTATGAAAGCTCAGCAAGTTGTGAAAAGTGAAAGTGGAGAAGAGATGTTGGTCCCATTCCAAGATACTCCTGTGGAAGTTGAACAGAACACAGAGCTACCTGACTACCTGCCTGAGGATGAGAGTCCCACAAAGGAACAGGACAAAGCGGTGTCCCGGGTCGGCTCACACCCAGAAGGTGGAGCTAGCTGGCTTAGCACAGCTGCAAACTTTTTATCCAGATCATTTTATTGGTGA MEVCYQLPVLPLDRPVPQHVLSRRGAISFSSSSALFGCPNPRQLSQNYNSRRNKTSGL*NL*HSSVLQYGRW**F**DEFTSKESSIFSGNYKQTCQNSGFAYRWP**YVSEKSM*RGFVKN*RCY*LYFSNGCSKVCGANPFRFES*GFGISNSINQGYESSASCEK*KWRRDVGPIPRYSCGS*TEHRAT*LPA*G*ESHKGTGQSGVPGRLTPRRWS*LA*HSCKLFIQIILLV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28629 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 508 TRUE 173 CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60042756:- chr10:61786056-62493248:- chr10:61802514:- chr10:59875637 chr10:60048573 NA NA chr10:61635395 chr10:61808331 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF2046-PARTIAL|49-303~|6.6e-156^DUF1192|52-69|0.0025^DUF1192|143-167|0.11^DUF1192|256-280|0.00072^DUF1192-PARTIAL|300-303~|0.34 none ["CCDC6:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.12Mb] 75 129 75 36.37 ONLY_REF_SPLICE YES_LDAS 1.1724 GT 1.8892 AG 1.5656 ENST00000263102.7 1-303 ENST00000467420.7 5314-5379 chr10|-|[2]59906122-59906424[0]<==>chr10|-|[2]60042691-60042756[0] atggcggacagcgccagcgagagcgacacggacggggcggggggcaacagcagcagctcggccgccatgcagtcgtcctgctcgtcgacctcgggcggcggcggtggcggcgggggaggcggcggcggtgggaagtcggggggcattgtcatctcgccgttccgcctggaggagctcaccaaccgcctggcctcgctgcagcaagagaacaaggtgctgaagatagagctggagacctacaaactgaagtgcaaggcactgcaggaggagaaccgcgacctgcgcaaagccagcgtgaccatcGGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAGAAGAGCCACTCGTAA MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIGEGFKVKTKKEIRHVEKKSHS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|TRUE|FALSE|TRUE|FALSE,TRUE|TRUE,TRUE|FALSE|TRUE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28631 ITGB6::RBMS1 ENSG00000115221.12::ENSG00000153250.21 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 256 FALSE NA FALSE NA ITGB6 ENSG00000115221.12 protein_coding - - chr2:160099667-160200313:- chr2:160112080:- chr2:160956178-161056824:- chr2:160968591:- RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160287084:- chr2:161128662-161350318:- chr2:161143595:- chr2:160111810,chr2:160111816 chr2:160293561,chr2:160293564 NA NA chr2:160968321,chr2:160968327 chr2:161150072,chr2:161150075 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PSI_integrin|28-71|7.9e-19^Integrin_beta|129-375|6.5e-114^Integrin_B_tail|451-476|7^EGF_2|452-457|2.6^PSI_integrin|456-468|7^I-EGF_1|456-485|2.8e-14^EGF_2|465-490|1.4e-05^PSI_integrin|476-502|4.8^I-EGF_1|502-525|8.5e-05^EGF_2|508-537|4.5e-05^PSI_integrin|511-523|7^I-EGF_1|537-540|7^EGF_2|544-574|2e-08^I-EGF_1|552-569|5e-05^Integrin_B_tail|568-577|7^EGF_2|583-614|8.9e-09^I-EGF_1|590-605|6.7e-05^Integrin_B_tail|591-618|7^PSI_integrin|609-617|7^PSI_integrin|623-633|0.048^Integrin_B_tail|624-706|1.5e-20^EGF_2|640-646|7^Fib-H_N|661-695|1.3e-05^I-EGF_1|667-678|1.1^Integrin_b_cyt|731-774|2.3e-22 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr2:0.00Mb];LOCAL_REARRANGEMENT:-:[263] 50 27 50 27 ONLY_REF_SPLICE YES_LDAS 0.8105 GT 1.7232 AG 1.6402 ENST00000409872.1 1-2101 ENST00000348849.8 641-1221 chr2|-|[0]160112080-160112199[1]|[0]160123791-160123888[2]|[1]160126379-160126601[1]|[0]160137434-160137851[0]|[2]160138065-160138199[0]|[2]160141982-160142071[0]|[2]160169212-160169307[0]|[2]160172569-160172730[0]|[2]160173974-160174139[2]|[1]160195369-160195615[1]|[0]160196216-160196420[0]|[2]160199179-160199258[1]|[0]160200003-160200063[0]<==>chr2|-|[2]160275637-160275714[0]|[2]160277303-160277383[0]|[2]160278548-160278658[0]|[2]160281314-160281364[0]|[2]160284775-160284868[2]|[1]160284995-160285044[0]|[2]160286969-160287084[1] atggggattgaactgctttgcctgttctttctatttctaggaaggaatgatcacgtacaaggtggctgtgccctgggaggtgcagaaacctgtgaagactgcctgcttattggacctcagtgtgcctggtgtgctcaggagaattttactcatccatctggagttggcgaaaggtgtgataccccagcaaaccttttagctaaaggatgtcaattaaacttcatcgaaaaccctgtctcccaagtagaaatacttaaaaataagcctctcagtgtaggcagacagaaaaatagttctgacattgttcagattgcgcctcaaagcttgatccttaagttgagaccaggtggtgcgcagactctgcaggtgcatgtccgccagactgaggactacccggtggatttgtattacctcatggacctctccgcctccatggatgacgacctcaacacaataaaggagctgggctcccggctttccaaagagatgtctaaattaaccagcaactttagactgggcttcggatcttttgtggaaaaacctgtatccccttttgtgaaaacaacaccagaagaaattgccaacccttgcagtagtattccatacttctgtttacctacatttggattcaagcacattttgccattgacaaatgatgctgaaagattcaatgaaattgtgaagaatcagaaaatttctgctaatattgacacacccgaaggtggatttgatgcaattatgcaagctgctgtgtgtaaggaaaaaattggctggcggaatgactccctccacctcctggtctttgtgagtgatgctgattctcattttggaatggacagcaaactagcaggcatcgtcattcctaatgacgggctctgtcacttggacagcaagaatgaatactccatgtcaactgtcttggaatatccaacaattggacaactcattgataaactggtacaaaacaacgtgttattgatcttcgctgtaacccaagaacaagttcatttatatgagaattacgcaaaacttattcctggagctacagtaggtctacttcagaaggactccggaaacattctccagctgatcatctcagcttatgaagaactgcggtctgaggtggaactggaagtattaggagacactgaaggactcaacttgtcatttacagccatctgtaacaacggtaccctcttccaacaccaaaagaaatgctctcacatgaaagtgggagacacagcttccttcagcgtgactgtgaatatcccacactgcgagagaagaagcaggcacattatcataaagcctgtggggctgggggatgccctggaattacttgtcagcccagaatgcaactgcgactgtcagaaagaagtggaagtgaacagctccaaatgtcaccacgggaacggctctttccagtgtggggtgtgtgcctgccaccctggccacatggggcctcgctgtgagtgtggcgaggacatgctgagcacagattcctgcaaggaggccccagatcatccctcctgcagcggaaggggtgactgctactgtgggcagtgtatctgccacttgtctccctatggaaacatttatgggccttattgccagtgtgacaatttctcctgcgtgagacacaaagggctgctctgcggaggtaacggcgactgtgactgtggtgaatgtgtgtgcaggagcggctggactggcgagtactgcaactgcaccaccagcacggactcctgcgtctctgaagatggagtgctctgcagcgggcgcggggactgtgtttgtggcaagtgtgtttgcacaaaccctggagcctcaggaccaacctgtgaacgatgtcctacctgtggtgacccctgtaactctaaacggagctgcattgagtgccacctgtcagcagctggccaagcccgagaagaatgtgtggacaagtgcaaactagctggtgcgaccatcagtgaagaagaagatttctcaaaggatggttctgtttcctgctctctgcaaggagaaaatgaatgtcttattacattcctaataactacagataatgaggggaaaaccatcattcacagcatcaatgaaaaagCCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTTGCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGGATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAGGTGCAAAGTCCTTCGTGGATGCAACCTCAACCATATATTCTACAGCACCCTGGTGCCGTGTTAACTCCCTCAATGGAGCACACCATGTCACTACAGCCCGCATCAATGATCAGCCCTCTGGCCCAGCAGATGAGTCATCTGTCACTAGGCAGCACCGGAACATACATGCCTGCAACGTCAGCTATGCAAGGAGCCTACTTGCCACAGTATGCACATATGCAGACGACAGCGGTTCCTGTTGAGGAGGCAAGTGGTCAACAGCAGGTGGCTGTCGAGACGTCTAATGACCATTCTCCATATACCTTTCAACCTAATAAGTAA MGIELLCLFFLFLGRNDHVQGGCALGGAETCEDCLLIGPQCAWCAQENFTHPSGVGERCDTPANLLAKGCQLNFIENPVSQVEILKNKPLSVGRQKNSSDIVQIAPQSLILKLRPGGAQTLQVHVRQTEDYPVDLYYLMDLSASMDDDLNTIKELGSRLSKEMSKLTSNFRLGFGSFVEKPVSPFVKTTPEEIANPCSSIPYFCLPTFGFKHILPLTNDAERFNEIVKNQKISANIDTPEGGFDAIMQAAVCKEKIGWRNDSLHLLVFVSDADSHFGMDSKLAGIVIPNDGLCHLDSKNEYSMSTVLEYPTIGQLIDKLVQNNVLLIFAVTQEQVHLYENYAKLIPGATVGLLQKDSGNILQLIISAYEELRSEVELEVLGDTEGLNLSFTAICNNGTLFQHQKKCSHMKVGDTASFSVTVNIPHCERRSRHIIIKPVGLGDALELLVSPECNCDCQKEVEVNSSKCHHGNGSFQCGVCACHPGHMGPRCECGEDMLSTDSCKEAPDHPSCSGRGDCYCGQCICHLSPYGNIYGPYCQCDNFSCVRHKGLLCGGNGDCDCGECVCRSGWTGEYCNCTTSTDSCVSEDGVLCSGRGDCVCGKCVCTNPGASGPTCERCPTCGDPCNSKRSCIECHLSAAGQAREECVDKCKLAGATISEEEDFSKDGSVSCSLQGENECLITFLITTDNEGKTIIHSINEKAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Lung squamous cell carcinoma,Bladder Urothelial Carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,BLADDER,HEAD_AND_NECK,BREAST,BLADDER,BLADDER,BLADDER exact 161055690,161051880,161051880,161030485|161051880|161051880|161055690|161025723,160964190,160998493,161025723|161025723 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE,FALSE,FALSE|FALSE 161141555,161174738,161174738,161159998|161223902|161258613|161157241|161132225,161141555,161143595,161133894|161132225 FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE,TRUE,FALSE|FALSE PARTIALLY,YES,YES,PARTIALLY,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28634 UBE2K::UGDH-AS1 ENSG00000078140.14::ENSG00000249348.2 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2K ENSG00000078140.14 protein_coding + + chr4:39698109-39782792:+ chr4:39698390:+ chr4:39699729-39784412:+ chr4:39700010:+ UGDH-AS1 ENSG00000249348.2 lncRNA + + chr4:39527720-39594707:+ chr4:39587923:+ chr4:39529340-39596327:+ chr4:39589543:+ chr4:39702294 chr4:39552466 NA NA chr4:39703914 chr4:39554086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.10Mb] 47 6 47 5.22 ONLY_REF_SPLICE YES_LDAS 0.5497 GT 1.6895 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28635 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 257 TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120193424:- chr3:119883492-120004069:- chr3:119912271:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase-PARTIAL|56-88~|2.4e-68^ABC1|58-85|0.00026^PK_Tyr_Ser-Thr-PARTIAL|59-88~|1.2e-26^Kinase-like-PARTIAL|60-88~|0.69 7tm_3-PARTIAL|~234-311|1.2e-43^NYD-SP28|356-386|1.4e-05 ["GSK3B:ArcherDX_panel","GSK3B:FoundationOne_panel","GSK3B:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[70228] 40 21 40 18.63 ONLY_REF_SPLICE YES_LDAS 0.6172 GT 1.8892 AG 1.8256 ENST00000678439.1 1-88 ENST00000464295.6 234-2445 chr3|-|[0]120093347-120093434[0]<==>chr3|-|[2]120167032-120168384[0]|[2]120173312-120173470[0]|[2]120181125-120181361[0]|[2]120185299-120185394[0]|[2]120186658-120186783[0]|[2]120192939-120193049[0]|[2]120193295-120193424[2] atgtcagggcggcccagaaccacctcctttgcggagagctgcaagccggtgcagcagccttcagcttttggcagcatgaaagttagcaGATTGTGAAGATGTCCAGTCCCAATCTGAACATTGTGACCTTACTGGGCAGTTGTCTCACTTACAGTAGCGCTTACCTCTTTGGGATTCAGGATGTTTTAGTGGGGAGCTCAATGGAAACTCTCATTCAGACAAGACTGTCCATGCTGTGCATTGGGACCTCCCTTGTGTTTGGCCCCATTCTGGGAAAGAGCTGGCGACTCTACAAGGTGTTTACCCAAAGGGTCCCGGACAAGAGAGTGATTATCAAAGACCTGCAGTTGCTGGGGTTGGTGGCAGCCCTGTTGATGGCTGATGTGATCCTGCTCATGACGTGGGTGCTGACTGATCCCATCCAGTGCCTCCAGATTCTCAGTGTCAGTATGACGGTGACAGGGAAAGACGTGTCCTGCACTTCGACCAGCACCCACTTCTGTGCTTCCCGGTATTCCGATGTTTGGATTGCTCTCATTTGGGGATGCAAGGGTCTGCTCCTGCTGTATGGTGCCTACCTGGCTGGCCTGACTGGCCATGTCAGCTCCCCTCCTGTGAATCAGTCCTTAACCATCATGGTGGGGGTCAACCTCCTTGTACTGGCTGCTGGGCTGCTTTTTGTAGTCACCAGATACTTGCATTCCTGGCCCAACCTGGTCTTTGGACTCACATCTGGAGGGATCTTTGTTTGTACAACTACAATCAACTGCTTCATCTTCATTCCCCAGCTGAAGCAATGGAAGGCATTTGAAGAGGAAAACCAAACAATCAGACGCATGGCCAAATATTTCAGCACTCCCAACAAAAGCTTCCATACCCAGTATGGTGAGGAGGAGAACTGCCACCCGAGGGGAGAGAAAAGCTCCATGGAGAGGCTCCTCACAGAAAAAAATGCTGTGATTGAAAGCCTGCAGGAACAAGTAAACAACGCCAAAGAGAAGATTGTGAGGCTGATGTCAGCTGAGTGCACCTATGACCTCCCAGAGGGGGCTGCCCCACCTGCCTCTTCCCCGAACAAGGACGTCCAGGCGGTAGCCTCGGTCCACACCCTGGCAGCTGCTCAGGGGCCTTCGGGTCACCTCTCTGACTTTCAGAATGATCCTGGCATGGCTGCCCGGGATTCCCAGTGCACTTCAGGGCCCTCCTCATATGCACAAAGCCTTGAGGGGCCTGGGAAGGACTCCAGCTTCTCCCCAGGGAAGGAGGAGAAGATATCTGACTCAAAAGACTTTTCTGATCATTTAGACTCAGGTTGTAGCCAGAAGCCATGGACTGAGCAAAGCCTGGGTCCAGAAAGAGGAGACCAAGTCCCCATGAACCCCAGCCAGAGTCTCCTACCAGAAAGAGGCGGCTCAGATCCCCAGAGACAGAGGCATCTGGAGAACTCAGAGGAGCCCCCAGAGCGGCGGTCACGGGTTAGTTCAGTAATCAGGGAGAAACTTCAGGAGGTCTTACAAGATCTGGGCCTGGGCCCTGAGGCTTCCCTCTCCACCGCCCCCTCTTGTCATCAGCAAACCTGGAAGAACAGTGCTGCCTTCAGCCCCCAAAAGATGCCCCTCTCCAAGGAGCTCGGCTTTAGCCCTTACATGGTGAGGAGAAGGCGGGCAGCTCAGCGGGCCCGCTCACACTTTCCTGGCTCTGCACCCTCATCTGTGGGGCATCGGGCAAACAGGACTGTTCCTGGGGCACACAGCAGGCTACATGTGCAGAATGGGGACAGCCCCAGCCTGGCCCCACAAACTACTGATTCCAGAGTACGAAGACCTTCTTCCAGGAAGCCTTCACTACCTTCAGATCCTCAAGACAGACCAGGTACCCTGGAGGGCAGCAAACAAAGCCAGACAGAGCCCGAGGGGGCTAGAGGGAGCAAAGCAGCCTTTCTTCGCCAGCCTTCTGGTTCTGGCCGGGCCCCAAGTCCTGCTGCCCCATGCCTCTCCAAAGCCTCACCTGACTTGCCTGAACAGTGGCAGCTGTGGCCCCCAGTGCCCTCAGGCTGTGCCTCCCTGTCTTCTCAACACAGCTATTTTGATACTGAGTCCAGCAGCTCAGATGAGTTCTTCTGCCGCTGCCACCGGCCCTACTGTGAAATCTGCTTCCAGAGCTCTTCTGACTCTAGTGACAGTGGCACATCAGACACTGACCCTGAGCCTACTGGGGGGCTGGCTTCCTGGGAAAAGCTGTGGGCCCGCTCCAAGCCTATTGTGAACTTCAAAGATGACTTGAAACCCACGCTGGTGTGA MSGRPRTTSFAESCKPVQQPSAFGSMKVSRL*RCPVPI*TL*PYWAVVSLTVALTSLGFRMF*WGAQWKLSFRQDCPCCALGPPLCLAPFWERAGDSTRCLPKGSRTRE*LSKTCSCWGWWQPC*WLM*SCS*RGC*LIPSSASRFSVSV*R*QGKTCPALRPAPTSVLPGIPMFGLLSFGDARVCSCCMVPTWLA*LAMSAPLL*ISP*PSWWGSTSLYWLLGCFL*SPDTCIPGPTWSLDSHLEGSLFVQLQSTASSSFPS*SNGRHLKRKTKQSDAWPNISALPTKASIPSMVRRRTATRGERKAPWRGSSQKKML*LKACRNK*TTPKRRL*G*CQLSAPMTSQRGLPHLPLPRTRTSRR*PRSTPWQLLRGLRVTSLTFRMILAWLPGIPSALQGPPHMHKALRGLGRTPASPQGRRRRYLTQKTFLII*TQVVARSHGLSKAWVQKEETKSP*TPARVSYQKEAAQIPRDRGIWRTQRSPQSGGHGLVQ*SGRNFRRSYKIWAWALRLPSPPPPLVISKPGRTVLPSAPKRCPSPRSSALALTW*GEGGQLSGPAHTFLALHPHLWGIGQTGLFLGHTAGYMCRMGTAPAWPHKLLIPEYEDLLPGSLHYLQILKTDQVPWRAANKARQSPRGLEGAKQPFFASLLVLAGPQVLLPHASPKPHLTCLNSGSCGPQCPQAVPPCLLNTAILILSPAAQMSSSAAATGPTVKSASRALLTLVTVAHQTLTLSLLGGWLPGKSCGPAPSLL*TSKMT*NPRWC FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 28637 FEM1B::KCNG3 ENSG00000169018.6::ENSG00000171126.8 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 260 FALSE NA FALSE NA FEM1B ENSG00000169018.6 protein_coding + + chr15:68277745-68295862:+ chr15:68278665:+ chr15:68570083-68588200:+ chr15:68571003:+ KCNG3 ENSG00000171126.8 protein_coding - - chr2:42442017-42493982:- chr2:42444579:- chr2:42669157-42721122:- chr2:42671719:- chr15:68287085,chr15:68287085 chr2:42470116,chr2:42470119 NA NA chr15:68579423,chr15:68579423 chr2:42697256,chr2:42697259 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|9-66|1.8e-06^Ank|11-27|2^Ank_2|19-117|4.6e-18^Ank_3|23-36|4.9^Ank_5|43-71|5.4e-07^Ank|47-68|5.8e-08^Ank_3|48-69|7.2e-06^Ank|87-118|1.1e-11^Ank_3|87-116|5.7e-08^Ank_5|88-125|2e-05^Ank_4|90-129|1.2e-09^Ank_5|107-156|6.6e-07^Ank_2|117-183|4e-18^Ank|122-152|3.7e-08^Ank_4|122-174|1.6e-16^Ank_3|122-148|5.5e-07^Ank_5|140-184|1.2e-11^Ank|154-183|6.4e-12^Ank_3|154-182|3.4e-08^Ank_2|158-246|7.4e-24^Ank_4|159-204|1.8e-15^Ank_5|179-207|1.3e-07^Ank_3|186-212|1.6e-07^Ank|187-210|6.4e-09^Ank_5|215-244|0.00068^Ank|218-247|5.6e-07^Ank_3|218-242|0.00019^Ank_4|220-247|0.0005 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr2] 28 11 28 11 ONLY_REF_SPLICE YES_LDAS 0.4105 GT 1.7819 AG 1.7819 ENST00000306917.5 1-248 ENST00000394973.4 633-1278 chr15|+|[0]68278418-68278665[1]<==>chr2|-|[2]42443934-42444579[2] atggagggcctggctggctatgtatacaaggcggccagcgagggcaaggtgctgactctggccgccttgcttctcaaccggtctgaaagcgacatccgctatctgcttggctatgtcagccagcagggagggcagcgctccacgcccctcatcatcgcagcccgcaatggacacgcaaaggtggtacgcttgctcttagaacattaccgggtgcagactcagcagactggcaccgtccgcttcgacggGATAATTGAAGCTATCTGCATAGGTTGGTTCACTGCCGAGTGCATCGTGAGGTTCATTGTCTCCAAAAACAAGTGTGAGTTTGTCAAGAGACCCCTGAACATCATTGATTTACTGGCAATCACGCCGTATTACATCTCTGTGTTGATGACAGTGTTTACAGGCGAGAACTCTCAACTCCAGAGGGCTGGAGTCACCTTGAGGGTACTTAGAATGATGAGGATTTTTTGGGTGATTAAGCTTGCCCGTCACTTCATTGGTCTTCAGACACTCGGTTTGACTCTCAAACGTTGCTACCGAGAGATGGTTATGTTACTTGTCTTCATTTGTGTTGCCATGGCAATCTTTAGTGCACTTTCTCAGCTTCTTGAACATGGGCTGGACCTGGAAACATCCAACAAGGACTTTACCAGCATTCCTGCTGCCTGCTGGTGGGTGATTATCTCTATGACTACAGTTGGCTATGGAGATATGTATCCTATCACAGTGCCTGGAAGAATTCTTGGAGGAGTTTGTGTTGTCAGTGGAATTGTTCTATTGGCATTACCTATCACTTTTATCTACCATAGCTTTGTGCAGTGTTATCATGAGCTCAAGTTTAGATCTGCTAGGTATAGTAGGAGCCTCTCCACTGAATTCCTGAATTAA MEGLAGYVYKAASEGKVLTLAALLLNRSESDIRYLLGYVSQQGGQRSTPLIIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGIIEAICIGWFTAECIVRFIVSKNKCEFVKRPLNIIDLLAITPYYISVLMTVFTGENSQLQRAGVTLRVLRMMRIFWVIKLARHFIGLQTLGLTLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPAACWWVIISMTTVGYGDMYPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQCYHELKFRSARYSRSLSTEFLN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28638 EIF2AK3::PRKD3 ENSG00000172071.15::ENSG00000115825.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 264 TRUE 517 TRUE 180 EIF2AK3 ENSG00000172071.15 protein_coding - - chr2:88556741-88691518:- chr2:88613724:- chr2:88856259-88991036:- chr2:88913242:- PRKD3 ENSG00000115825.11 protein_coding - - chr2:37250502-37324833:- chr2:37293271:- chr2:37477645-37551976:- chr2:37520414:- chr2:88599812,chr2:88599814 chr2:37321933,chr2:37321932 NA NA chr2:88899330,chr2:88899332 chr2:37549076,chr2:37549075 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PQQ_3|105-122|0.0044^PQQ_2|106-162|0.00048^PQQ_3|124-165|0.031^PQQ_2|243-351|0.00043^PQQ_3|253-262|4.3^PQQ_3|327-350|0.36^PQQ_3|383-396|1.5 C1_1-PARTIAL|~289-321|2e-18^C1_2-PARTIAL|~289-314|0.00019^RH_dom-PARTIAL|~289-318|0.0074^FYVE_2-PARTIAL|~289-316|0.0016^PHD-PARTIAL|~289-315|0.0031^OrfB_Zn_ribbon-PARTIAL|~289-310|0.14^PH|418-493|3.1e-11^PH|540-569|0.097^ABC1|568-607|0.00027^PK_Tyr_Ser-Thr|579-822|1.9e-35^Pkinase|580-832|1.1e-73^Kinase-like|580-629|1.4^Kdo|608-721|2.5e-08^RIO1|622-711|0.00018^ABC1|647-730|3.4e-06^Kinase-like|672-782|3.2e-08^Pox_ser-thr_kin|675-710|0.00018^PH|862-888|2.4 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:51.23Mb] 23 5 23 3.59 ONLY_REF_SPLICE YES_LDAS 0.2799 GT 1.8892 AG 1.9086 ENST00000303236.9 1-438 ENST00000379066.5 289-2673 chr2|-|[2]88613724-88613853[2]|[1]88626967-88627274[0]<==>chr2|-|[2]37253177-37253350[0]|[2]37254204-37254289[1]|[0]37256662-37256929[0]|[2]37259583-37259681[0]|[2]37260223-37260384[0]|[2]37267430-37267536[1]|[0]37269615-37269687[0]|[2]37272380-37272432[1]|[0]37274421-37274697[0]|[2]37275767-37275844[0]|[2]37277866-37277989[2]|[1]37279746-37279929[1]|[0]37282542-37282619[1]|[0]37286177-37286369[0]|[2]37289356-37289513[1]|[0]37290868-37290999[1]|[0]37293133-37293271[0] atggagcgcgccatcagcccggggctgctggtacgggcgctgctgctgctgctgctgctgctggggctcgcggcaaggacggtggccgcggggcgcgcccgtggcctcccagcgccgacggcggaggcggcgttcggcctcggggcggccgctgctcccacctcagcgacgcgagtaccggcggcgggcgccgtggctgcggccgaggtgactgtggaggacgctgaggcgctgccggcagccgcgggagagcaggagcctcggggtccggaaccagacgatgagacagagttgcgaccgcgcggcaggtcattagtaattatcagcactttagatgggagaattgctgccttggatcctgaaaatcatggtaaaaagcagtgggatttggatgtgggatccggttccttggtgtcatccagccttagcaaaccagagTTTCCAGAGTGTGGATTCTTTGGCATGTATGACAAAATTCTTCTCTTTCGCCATGACATGAACTCAGAAAACATTTTGCAGCTGATTACCTCAGCAGATGAAATACATGAAGGAGACCTAGTGGAAGTGGTTCTTTCAGCTTTAGCCACAGTAGAAGACTTCCAGATTCGTCCACATACTCTCTATGTACATTCTTACAAAGCTCCTACTTTCTGTGATTACTGTGGTGAGATGCTCTGGGGATTGGTACGTCAAGGACTGAAATGTGAAGGCTGTGGATTAAATTACCATAAACGATGTGCCTTCAAGATTCCAAATAACTGTAGTGGAGTAAGAAAGAGACGTCTGTCAAATGTATCTTTACCAGGACCCGGCCTCTCAGTTCCAAGACCCCTACAGCCTGAATATGTAGCCCTTCCCAGTGAAGAGTCACATGTCCACCAGGAACCAAGTAAGAGAATTCCTTCTTGGAGTGGTCGCCCAATCTGGATGGAAAAGATGGTAATGTGCAGAGTGAAAGTTCCACACACATTTGCTGTTCACTCTTACACCCGTCCCACGATATGTCAGTACTGCAAGCGGTTACTGAAAGGCCTCTTTCGCCAAGGAATGCAGTGTAAAGATTGCAAATTCAACTGCCATAAACGCTGTGCATCAAAAGTACCAAGAGACTGCCTTGGAGAGGTTACTTTCAATGGAGAACCTTCCAGTCTGGGAACAGATACAGATATACCAATGGATATTGACAATAATGACATAAATAGTGATAGTAGTCGGGGTTTGGATGACACAGAAGAGCCATCACCCCCAGAAGATAAGATGTTCTTCTTGGATCCATCTGATCTCGATGTGGAAAGAGATGAAGAAGCCGTTAAAACAATCAGTCCATCAACAAGCAATAATATTCCGCTAATGAGGGTTGTACAATCCATCAAGCACACAAAGAGGAAGAGCAGCACAATGGTGAAGGAAGGGTGGATGGTCCATTACACCAGCAGGGATAACCTGAGAAAGAGGCATTATTGGAGACTTGACAGCAAATGTCTAACATTATTTCAGAATGAATCTGGATCAAAGTATTATAAGGAAATTCCACTTTCAGAAATTCTCCGCATATCTTCACCACGAGATTTCACAAACATTTCACAAGGCAGCAATCCACACTGTTTTGAAATCATTACTGATACTATGGTATACTTCGTTGGTGAGAACAATGGGGACAGCTCTCATAATCCTGTTCTTGCTGCCACTGGAGTTGGACTTGATGTAGCACAGAGCTGGGAAAAAGCAATTCGCCAAGCCCTCATGCCTGTTACTCCTCAAGCAAGTGTTTGCACTTCTCCAGGGCAAGGGAAAGATCACAAAGATTTGTCTACAAGTATCTCTGTATCTAATTGTCAGATTCAGGAGAATGTGGATATCAGTACTGTTTACCAGATCTTTGCAGATGAGGTGCTTGGTTCAGGCCAGTTTGGCATCGTTTATGGAGGAAAACATAGAAAGACTGGGAGGGATGTGGCTATTAAAGTAATTGATAAGATGAGATTCCCCACAAAACAAGAAAGTCAACTCCGTAATGAAGTGGCTATTTTACAGAATTTGCACCATCCTGGGATTGTAAACCTGGAATGTATGTTTGAAACCCCAGAACGAGTCTTTGTAGTAATGGAAAAGCTGCATGGAGATATGTTGGAAATGATTCTATCCAGTGAGAAAAGTCGGCTTCCAGAACGAATTACTAAATTCATGGTCACACAGATACTTGTTGCTTTGAGGAATCTGCATTTTAAGAATATTGTGCACTGTGATTTAAAGCCAGAAAATGTGCTGCTTGCATCAGCAGAGCCATTTCCTCAGGTGAAGCTGTGTGACTTTGGATTTGCACGCATCATTGGTGAAAAGTCATTCAGGAGATCTGTGGTAGGAACTCCAGCATACTTAGCCCCTGAAGTTCTCCGGAGCAAAGGTTACAACCGTTCCCTAGATATGTGGTCAGTGGGAGTTATCATCTATGTGAGCCTCAGTGGCACATTTCCTTTTAATGAGGATGAAGATATAAATGACCAAATCCAAAATGCTGCATTTATGTACCCACCAAATCCATGGAGAGAAATTTCTGGTGAAGCAATTGATCTGATAAACAATCTGCTTCAAGTGAAGATGAGAAAACGTTACAGTGTTGACAAATCTCTTAGTCATCCCTGGCTACAGGACTATCAGACTTGGCTTGACCTTAGAGAATTTGAAACTCGCATTGGAGAACGTTACATTACACATGAAAGTGATGATGCTCGCTGGGAAATACATGCATACACACATAACCTTGTATACCCAAAGCACTTCATTATGGCTCCTAATCCAGATGATATGGAAGAAGATCCTTAA MERAISPGLLVRALLLLLLLLGLAARTVAAGRARGLPAPTAEAAFGLGAAAAPTSATRVPAAGAVAAAEVTVEDAEALPAAAGEQEPRGPEPDDETELRPRGRSLVIISTLDGRIAALDPENHGKKQWDLDVGSGSLVSSSLSKPEFPECGFFGMYDKILLFRHDMNSENILQLITSADEIHEGDLVEVVLSALATVEDFQIRPHTLYVHSYKAPTFCDYCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKRRLSNVSLPGPGLSVPRPLQPEYVALPSEESHVHQEPSKRIPSWSGRPIWMEKMVMCRVKVPHTFAVHSYTRPTICQYCKRLLKGLFRQGMQCKDCKFNCHKRCASKVPRDCLGEVTFNGEPSSLGTDTDIPMDIDNNDINSDSSRGLDDTEEPSPPEDKMFFLDPSDLDVERDEEAVKTISPSTSNNIPLMRVVQSIKHTKRKSSTMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMPVTPQASVCTSPGQGKDHKDLSTSISVSNCQIQENVDISTVYQIFADEVLGSGQFGIVYGGKHRKTGRDVAIKVIDKMRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKSRLPERITKFMVTQILVALRNLHFKNIVHCDLKPENVLLASAEPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRSKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWREISGEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQTWLDLREFETRIGERYITHESDDARWEIHAYTHNLVYPKHFIMAPNPDDMEEDP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Eukaryotic translation initiation factor 2-alpha kinase 3 Other PEK PEK Q9NZJ5 TRUE TRUE Serine/threonine-protein kinase D3 CAMK PKD O94806 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28639 ZNF710::WDR93 ENSG00000140548.10::ENSG00000140527.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 261 FALSE NA FALSE NA ZNF710 ENSG00000140548.10 protein_coding + + chr15:90001324-90082206:+ chr15:90074290:+ chr15:90544556-90625438:+ chr15:90617522:+ WDR93 ENSG00000140527.15 protein_coding + + chr15:89690811-89743638:+ chr15:89727157:+ chr15:90234042-90286869:+ chr15:90270388:+ chr15:90075608 chr15:89722153 NA NA chr15:90618840 chr15:90265384 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-ISL3|165-175|3.2^DUF6759|270-311|0.14^DUF4379|291-328|0.00012^zf-H2C2_2|292-306|0.017^zf-C2H2_2|293-316|0.07^zf-C2H2_4|295-317|2.5e-06^zf-met|295-317|0.00012^zf-C2H2|296-317|3.6e-06^zf-H2C2_5|296-318|1.8^zf-C2H2_11|296-313|0.0052^zf_ZIC|296-314|0.00029^zf-C2H2_jaz|297-316|0.0048^zf-C2H2_6|297-313|0.045^zf-C2H2_3rep|297-426|0.68^zf-C2H2_9|297-316|1.8^Zn-ribbon_8|297-330|0.32^zf-C2H2_2|298-345|0.03^Zap1_zf1|300-315|0.022^zf-H2C2_2|309-334|1.7e-08^GAGA|321-342|0.098^zf-ISL3|321-330|0.065^zf-CHCC|321-332|0.15^zf-C2HE|322-345|1.4^zf-C2H2|323-345|1.1e-06^zf-C2H2_4|323-345|3.6e-05^zf-C2H2_jaz|323-344|5.1e-05^zf-C2H2_6|323-345|0.86^TerY_C|323-357|0.16^zf_ZIC|324-342|1.2^zf-C2HC_2|324-333|0.021^zf-met|324-343|0.037^zf-H2C2_5|325-346|0.055^YjdM_Zn_Ribbon|325-328|2.4^zf-C2H2_9|325-345|0.21^Zap1_zf1|328-343|0.019^DUF6759|335-372|1.1^zf-H2C2_2|337-362|2.3e-09^BolA|345-374|0.029^GAGA|346-378|0.0022^Scramblase|348-366|1.6^zf-C2HE|349-373|0.15^zf_ZIC|350-369|3.6^zf-C2H2_2|350-371|0.023^zf-C2H2|351-373|3.3e-07^zf-C2H2_4|351-373|0.00025^zf-C2H2_jaz|351-370|0.035^zf-C2H2_6|351-361|0.062^zf-C2H2_11|351-370|0.014^zf-C2HC_2|352-362|1.3^Zn-ribbon_8|352-385|2.9^zf-C2H2_9|353-374|0.38^zf-met|353-370|0.22^Zap1_zf1|356-371|0.032^zf-H2C2_5|364-374|0.032^zf-H2C2_2|365-390|7.6e-09^zf-C2H2_2|372-397|1.4^zf-C2HE|377-397|0.039^zf-CHCC|377-388|0.72^zf-C2H2|379-401|1.3e-06^zf-C2H2_4|379-401|8.5e-06^zf-C2H2_jaz|379-398|0.036^zf-C2H2_6|379-401|0.56^zf-met|379-398|0.13^Zn-ribbon_8|379-413|6.3^zf-C2H2_11|381-389|1.2^zf-C2HC_2|381-389|0.0078^zf-H2C2_2|393-418|0.099^YjdM_Zn_Ribbon|402-413|3.9^DUF6434|405-437|3.4^zf-C2H2|407-429|4.4e-06^zf-C2H2_4|407-429|7.5e-06^zf-C2H2_jaz|407-429|0.00026^zf-C2H2_6|407-431|2.8e-05^zf-C2HE|408-429|0.00016^zf-C2H2_9|408-429|0.53^zf-met|408-430|0.013^zf-C2H2_11|409-426|0.00071^Zn-ribbon_8|409-420|1.1^Zap1_zf1|411-426|0.017^zf_ZIC|412-427|6^zf-H2C2_5|417-430|0.23^zf-H2C2_2|422-445|1.2e-07^zf-C2H2_3rep|434-509|0.0099^zf-C2H2_2|434-458|0.72^zf-C2H2|435-457|1.3e-07^zf-C2H2_4|435-457|3e-06^zf-C2H2_6|435-457|0.015^zf-H2C2_5|435-459|0.0053^zf-C2H2_11|435-444|0.2^DUF4379|435-468|0.15^zf-met|435-454|0.027^Zn-ribbon_8|435-445|0.078^YjdM_Zn_Ribbon|436-473|0.0011^zf-C2H2_jaz|437-454|0.00023^zf-C2H2_9|437-458|1.6^Zap1_zf1|439-456|0.022^zf-C2HE|449-483|0.0014^zf-H2C2_2|450-474|6.5e-09^DUF6434|450-473|0.0035^Scramblase|451-522|0.00083^zf-C2H2_2|461-482|0.41^zf-ISL3|461-473|1.8^zf-C2H2|463-485|3.8e-06^zf-C2H2_4|463-485|4.3e-05^zf-C2H2_jaz|463-481|0.052^zf-C2H2_6|463-486|0.016^zf-met|463-481|8.4^Zn-ribbon_8|463-479|0.011^zf-C2H2_9|464-484|0.28^TerY_C|464-506|0.91^zf-C2H2_11|465-481|0.31^Zap1_zf1|466-481|0.98^zf_ZIC|467-481|1.6^zf-H2C2_2|477-501|1.8e-07^zf-H2C2_5|477-485|6.5^DUF6759|478-513|0.019^BolA|480-515|0.0041^zf-C2H2_2|488-511|0.011^DUF6434|488-505|7.2^zf-C2HE|489-513|0.019^Zn-ribbon_8|490-507|0.00075^zf-C2H2|491-513|6.6e-08^zf-C2H2_4|491-513|1.8e-06^zf-C2H2_jaz|491-510|0.0045^zf-C2H2_6|491-510|0.0051^zf-C2H2_11|491-512|3.4e-05^DUF4379|491-509|1.5^zf-ISL3|491-509|2.6^zf-met|491-510|0.0042^zf-CHCC|491-500|4.1^zf-C2HC_2|492-500|0.0022^YjdM_Zn_Ribbon|492-504|0.12^zf-C2H2_9|493-515|0.73^Zap1_zf1|496-511|0.5^zf-H2C2_5|504-513|0.18^zf-H2C2_2|505-530|2.2e-08^GAGA|515-542|0.03^zf-C2H2_2|517-539|0.017^zf-C2HE|517-540|0.37^zf-C2H2|519-541|5.9e-08^zf-C2H2_4|519-541|4.8e-07^zf-C2H2_6|519-542|0.0018^zf-H2C2_5|519-543|0.14^zf-C2H2_11|519-541|1.5^BolA|519-542|1.3^zf-met|519-538|0.74^Zn-ribbon_8|519-532|1.4^zf-C2H2_jaz|520-538|0.1^zf-C2HC_2|520-529|2.8^zf-C2H2_3rep|521-565|0.044^zf-C2H2_9|521-540|1.9^zf_ZIC|522-540|1.3^Zap1_zf1|524-539|0.093^zf-H2C2_2|534-558|2.5e-10^zf-C2HE|545-569|0.0061^TerY_C|545-598|0.0012^Scramblase|545-603|1.1^GAGA|546-574|2.3^zf-CHCC|546-556|4.7^zf-C2H2|547-569|1.3e-07^zf-C2H2_4|547-569|1.8e-06^zf-C2H2_jaz|547-566|0.00026^zf-C2H2_6|547-566|1.4e-07^zf-H2C2_5|547-552|1.9^zf-C2H2_11|547-556|1.1^zf_ZIC|547-567|0.00011^zf-C2H2_2|547-567|0.031^zf-met|547-566|0.00044^Zn-ribbon_8|547-582|0.00055^DUF4379|548-580|0.19^zf-C2HC_2|548-557|0.031^zf-C2H2_9|549-570|0.033^Zap1_zf1|552-566|1.3^zf-H2C2_2|565-585|1.9e-07^BolA|565-597|0.066^zf-C2H2_3rep|569-598|0.0008^zf-C2HE|572-594|0.14^zf-CHCC|572-584|0.0046^GAGA|573-598|0.0091^zf-ISL3|574-598|0.0011^zf-C2H2|575-598|1.6e-06^zf-C2H2_4|575-598|1.6e-06^zf-C2H2_jaz|575-594|0.43^zf-C2H2_6|575-585|0.11^zf-H2C2_5|575-598|4.1e-08^zf-C2H2_11|575-598|0.00014^zf-C2HC_2|576-594|0.018^YjdM_Zn_Ribbon|576-588|0.016^zf_ZIC|577-598|3.9^zf-C2H2_9|577-596|0.00066^Zap1_zf1|580-598|0.18^zf-H2C2_2|589-599|0.26 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.26Mb] 23 9 23 7.67 ONLY_REF_SPLICE YES_LDAS 0.3228 GT 1.8256 AG 1.6895 ENST00000268154.9 1-1825 ENST00000268130.12 881-2061 chr15|+|[0]90067138-90068595[2]|[0]90073071-90073262[2]|[0]90074116-90074290[0]<==>chr15|+|[1]89727157-89727328[1]|[2]89729023-89729093[0]|[1]89729683-89729769[0]|[1]89731443-89731562[0]|[1]89733006-89733219[1]|[2]89735490-89735553[2]|[0]89737573-89737729[0]|[1]89738041-89738236[1]|[2]89743292-89743391[2] atggagggcttcatggactcagggacacagacggacgccgtggtggtgctgtccttggctcaggccgccgtgcttggcctggtctccgaaaatgagctctttggagctaccataagcgccgaggccttctacccggacctggggcccgagctttcaggggcagccatgggagagcccgagccaccaggccccgacgtctaccagctggcctgcaacgggagggccttggaggagccggcggaggaggaggtgctggaggtggaggcagcctgtgagaagcacacccggcggaagacgcggccacctgtgcggttggtgcccaaggtcaagttcgagaaggtggaggaggaggaacaggaggtctatgaggtttctgtgccaggtgacgacaaggacgcagggccagcagaagcccccgccgaggcggccagtggcggctgcgacgccctggtgcagagcagcgccgtcaagatgatcgacctcagcgccttcagccgcaagccccggacgctccggcatctgccccgaaccccgaggccggagctgaacgtggccccatatgaccctcacttcccggccccggcccgggatggcttccccgagcccagcatggcgctgcctgggccagaggccttgcccacagagtgtgggttcgagccaccccacctggcccccctgagtgaccccgaggcccccagcatggagtccccggagcctgtcaagccggaacagggcttcgtgtggcaggaggccagtgagttcgaggctgacacggcgggttcgaccgtggaacgccacaagaaggcccagctggatcggctggacatcaacgtgcagattgacgactcctatctggtggaggcgggcgaccgccagaagcgctggcagtgccgcatgtgcgagaagtcctacacgtccaagtacaacctggtgacgcacatcctgggccacaacggcatcaagccacactcgtgcccacactgcagcaagctcttcaagcagcccagccacctgcagacgcacctgctgacgcaccagggcacccggccccacaagtgccaggtatgccacaaggccttcacgcagaccagccacctcaagcgccacatgctgctgcactcggaggtcaagccctacagctgccacttctgcggccgcggcttcgcctaccccagcgagctcaaggcccacgaagtgaagcatgagagtggccgctgccatgtctgcgtcgagtgcggcctggacttctccaccctgacccagctcaagcgccacctggcctcccaccagggccccaccctctaccagtgcctcgagtgtgacaagtccttccactaccgcagccagttgcagaaccacatgctcaagcaccagaacgtgcgacccttcgtgtgcactgaatgcggcatggagttcagccagattcaccacctcaagcagcactccctcacccacaagggcgtgaaggagttcaagtgcgaggtgtgtggccgggagttcaccctacaggcgaacatgaagcggcacatgctgatccacaccagcgtccggccctaccagtgccacatctgcttcaagacctttgtacagaagcagactctcaagacccacatgattgtacactcgcccgtgaagccattcaaatgcaaggtgtgcgggaagtccttcaaccgcatgtacaacctgctgggccacatgcacctgcacgccggcagcaagcccttcaagtgcccctactgctccagcaagtttaatctcaagggcaacctgagccggcacatgaaggtcaagcatggcgtcatggacatcggcctggacagccaagGCACCACATTCAAAAGCCCCCTGGAAGTCTTTGCAAAGATCAAGGACTGCTACGGACTGGGCTCCGGGCAGAATCATTTCATCAAGGACAGTCAGTGGGAGCAGCAAGCTGAGATCTTCAACGCTTCCTACAAGAAGTACCTAGATAGGGAGTGGGAGGAAGAGCCACTCAGTACGGCCACCTTCTATTTCCTTCTTCCTAGCTGCCTATTTGCAATGCCACCGGAAGTCAAGGGCCCCTCAGGAATGGCCTGTGTCCTTGGTATACACTGGACCAGAAGTCACAATTTCTTCCTGTATTCACTAAACCGAACTCTAAAGGATAAAGCTGACCCCGAGGGTGTGTGGCCCTGTGCTGCGCCCATTGCAGTCTCTCAGCTCAGCTGCTCCTCCTCCTACCTGGTGCTGGCCTGCGAGGATGGTGTGCTCACGCTGTGGGACCTGGCCAAAGGATTCCCTCTTGGGGTCGCTGCTCTTCCTCAGGGATGTTTCTGCCAAAGCATTCACTTCCTAAAATATTTCTCGGTCCACAAAGGACAGAATATGTATCCTGAAGGTCAAGTGAAATCCCAAATGAAATGTGTGGTGCTGTGCACAGACGCCTCCCTCCATCTGGTGGAGGCTAGCGGGACCCAAGGACCCACCATCAGTGTGCTTGTTGAGAGGCCTGTAAAGCACCTGGATAAAACCATCTGTGCCGTGGCCCCAGTCCCAGCCTTACCTGGCATGGTGCTCATCTTTTCCAAGAATGGCTCTGTGTGCCTTATGGATGTGGCCAAGCGTGAAATCATCTGTGCCTTTGCCCCTCCGGGAGCCTTTCCTCTGGAGGTCCCCTGGAAGCCAGTGTTTGCTGTGTCTCCAGACCATCCATGTTTCCTGCTCCGAGGAGACTATTCACATGAAACTGCGTCCACCGACGATGCTGGAATCCAATATTCTGTTTTCTATTTTAATTTTGAGGCCTGCCCACTCCTGGAAAATATCTCAAAAAATTGTACCATTCCTCAAAGGGACTTGGATAACATGGCCTTCCCCCAAGCACTGCCACTGGAGAAGAGATGTGAGCGTTTCCTCCAGAAGAGCTATCGGAAGCTGGAGAAGAACCCAGAGAAGGAGGAGGAGCACTGGGCCCGGCTTCAGAGGTACTCCTTGTCGCTCCAGAGAGAGAACTTCAAGAAGTGA MEGFMDSGTQTDAVVVLSLAQAAVLGLVSENELFGATISAEAFYPDLGPELSGAAMGEPEPPGPDVYQLACNGRALEEPAEEEVLEVEAACEKHTRRKTRPPVRLVPKVKFEKVEEEEQEVYEVSVPGDDKDAGPAEAPAEAASGGCDALVQSSAVKMIDLSAFSRKPRTLRHLPRTPRPELNVAPYDPHFPAPARDGFPEPSMALPGPEALPTECGFEPPHLAPLSDPEAPSMESPEPVKPEQGFVWQEASEFEADTAGSTVERHKKAQLDRLDINVQIDDSYLVEAGDRQKRWQCRMCEKSYTSKYNLVTHILGHNGIKPHSCPHCSKLFKQPSHLQTHLLTHQGTRPHKCQVCHKAFTQTSHLKRHMLLHSEVKPYSCHFCGRGFAYPSELKAHEVKHESGRCHVCVECGLDFSTLTQLKRHLASHQGPTLYQCLECDKSFHYRSQLQNHMLKHQNVRPFVCTECGMEFSQIHHLKQHSLTHKGVKEFKCEVCGREFTLQANMKRHMLIHTSVRPYQCHICFKTFVQKQTLKTHMIVHSPVKPFKCKVCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKFNLKGNLSRHMKVKHGVMDIGLDSQGTTFKSPLEVFAKIKDCYGLGSGQNHFIKDSQWEQQAEIFNASYKKYLDREWEEEPLSTATFYFLLPSCLFAMPPEVKGPSGMACVLGIHWTRSHNFFLYSLNRTLKDKADPEGVWPCAAPIAVSQLSCSSSYLVLACEDGVLTLWDLAKGFPLGVAALPQGCFCQSIHFLKYFSVHKGQNMYPEGQVKSQMKCVVLCTDASLHLVEASGTQGPTISVLVERPVKHLDKTICAVAPVPALPGMVLIFSKNGSVCLMDVAKREIICAFAPPGAFPLEVPWKPVFAVSPDHPCFLLRGDYSHETASTDDAGIQYSVFYFNFEACPLLENISKNCTIPQRDLDNMAFPQALPLEKRCERFLQKSYRKLEKNPEKEEEHWARLQRYSLSLQRENFKK* FALSE TRUE hsa-mir-3174 chr15:90006755-90006841:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28641 RCC1::EYA3 ENSG00000180198.17::ENSG00000158161.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28510104:+ chr1:28832455-28865812:+ chr1:28836616:+ EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28017239:- chr1:28296855-28415148:- chr1:28343750:- chr1:28513267,chr1:28513268 chr1:28031642,chr1:28031641 NA NA chr1:28839779,chr1:28839780 chr1:28358153,chr1:28358152 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.42Mb] 21 9 21 7.29 ONLY_REF_SPLICE YES_LDAS 0.2978 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28644 SIAH1::ABCC11 ENSG00000196470.12::ENSG00000121270.16 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 252 TRUE 511 TRUE 176 SIAH1 ENSG00000196470.12 protein_coding - - chr16:48356364-48448402:- chr16:48385204:- chr16:48390275-48482313:- chr16:48419115:- ABCC11 ENSG00000121270.16 protein_coding - - chr16:48165773-48247568:- chr16:48167660:- chr16:48199684-48281479:- chr16:48201571:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.11Mb] 16 17 16 1.73 ONLY_REF_SPLICE YES_LDAS 0.1866 GT 1.7232 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28645 CHKA::CASC3 ENSG00000110721.12::ENSG00000108349.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 272 FALSE NA FALSE NA CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68097019:- chr11:67820326-67888911:- chr11:67864486:- CASC3 ENSG00000108349.17 protein_coding + + chr17:40140318-40172171:+ chr17:40161753:+ chr17:38296571-38328424:+ chr17:38318006:+ chr11:68084597,chr11:68084600,chr11:68084189 chr17:40145308,chr17:40145305,chr17:40145286 NA NA chr11:67852064,chr11:67852067,chr11:67851656 chr17:38301561,chr17:38301558,chr17:38301539 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Choline_kinase|140-374|7.9e-72^APH|221-350|4e-11^EcKL|227-343|6.2e-09^Kdo|302-335|1.9e-05^Pkinase_fungal|303-334|5.2e-05 none ["CHKA:Oncogene"];["CASC3:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr17] 16 7 16 7 ONLY_REF_SPLICE YES_LDAS 0.2421 GT 1.9086 AG 1.4295 ENST00000265689.9 1-462 ENST00000264645.12 298-2112 chr11|-|[2]68097019-68097130[2]|[1]68120828-68121177[0]<==>chr17|+|[0]40161753-40161911[2]|[0]40162002-40162153[1]|[2]40162725-40162901[1]|[2]40163481-40164166[0]|[1]40166797-40166861[2]|[0]40167498-40167612[0]|[1]40167850-40167948[0]|[1]40168203-40168417[2]|[0]40169324-40169446[2]|[0]40169598-40169621[2] atgaaaaccaaattctgcaccgggggcgaggcggagccctcgccgctcgggctgctgctgagctgcggtagcggcagcgcggccccggcgcccggcgtggggcagcagcgcgacgccgccagcgacctcgagtccaagcagctgggcggccaacagccgccgctcgcgctgccccctccgccgccgctgccgctgccgctgccgctgccccagcccccgccgccgcagccgcccgcagacgagcagccggagccccggacgcggcgcagggcctatctgtggtgcaaggagttcctgcccggcgcctggcggggcctccgcgaggacgagttccacatcagtgtcatcagaggcggccttagcaacatgctgttccagtgctccctacctgacaccacagccacccttggtgatgagcctcggaaagtgctcctgcggctgtatggagcgattttgcagatgGGTGAAGAAGGTGAATACAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCAGAAGCTAATGATGCTGTTAATTCTTCAACAAAAGAAGAGAAGGGAGAAGAAAAGCCTGACACCAAAAGCACTGTGACTGGAGAGAGGCAAAGTGGGGACGGACAGGAGAGCACAGAGCCTGTGGAGAACAAAGTGGGTAAAAAGGGCCCTAAGCATTTGGATGATGATGAAGATCGGAAGAATCCAGCATACATACCTCGGAAAGGGCTCTTCTTTGAGCATGATCTTCGAGGGCAAACTCAGGAGGAGGAAGTCAGACCCAAGGGGCGTCAGCGAAAGCTATGGAAGGATGAGGGTCGCTGGGAGCATGACAAGTTCCGGGAAGATGAGCAGGCCCCAAAGTCCCGACAGGAGCTCATTGCTCTTTATGGTTATGACATTCGCTCAGCTCATAATCCTGATGACATCAAACCTCGAAGAATCCGGAAACCCCGATATGGGAGTCCTCCACAAAGAGATCCAAACTGGAACGGTGAGCGGCTAAACAAGTCTCATCGCCACCAGGGTCTTGGGGGCACCCTACCACCAAGGACATTTATTAACAGGAATGCTGCAGGTACCGGCCGTATGTCTGCACCCAGGAATTATTCTCGATCTGGGGGCTTCAAGGAAGGTCGTGCTGGTTTTAGGCCTGTGGAAGCTGGTGGGCAGCATGGTGGCCGGTCTGGTGAGACTGTTAAGCATGAGATTAGTTACCGGTCACGGCGCCTAGAGCAGACTTCTGTGAGGGATCCATCTCCAGAAGCAGATGCTCCAGTGCTTGGCAGTCCTGAGAAGGAAGAGGCAGCCTCAGAGCCACCAGCTGCTGCTCCTGATGCTGCACCACCACCCCCTGATAGGCCCATTGAGAAGAAATCCTATTCCCGGGCAAGAAGAACTCGAACCAAAGTTGGAGATGCAGTCAAGCTTGCAGAGGAGGTGCCCCCTCCTCCTGAAGGACTGATTCCAGCACCTCCAGTCCCAGAAACCACCCCAACTCCACCTACTAAGACTGGGACCTGGGAAGCTCCGGTGGATTCTAGTACAAGTGGACTTGAGCAAGATGTGGCACAACTAAATATAGCAGAACAGAATTGGAGTCCGGGGCAGCCTTCTTTCCTGCAACCACGGGAACTTCGAGGTATGCCCAACCATATACACATGGGAGCAGGACCTCCACCTCAGTTTAACCGGATGGAAGAAATGGGTGTCCAGGGTGGTCGAGCCAAACGCTATTCATCCCAGCGGCAAAGACCTGTGCCAGAGCCCCCCGCCCCTCCAGTGCATATCAGTATCATGGAGGGACATTACTATGATCCACTGCAGTTCCAGGGACCAATCTATACCCATGGTGACAGCCCTGCCCCGCTGCCTCCACAGGGCATGCTTGTGCAGCCAGGAATGAACCTTCCCCACCCAGGTTTACATCCCCACCAGACACCAGCTCCTCTGCCCAATCCAGGCCTCTATCCCCCACCAGTGTCCATGTCTCCAGGACAGCCACCACCTCAGCAGTTGCTTGCTCCTACTTACTTTTCTGCTCCAGGCGTCATGAACTTTGGTAATCCCAGTTACCCTTATGCTCCAGGGGCACTGCCTCCCCCACCACCGCCTCATCTGTATCCTAATACACAGGCCCCATCACAGGTATATGGAGGAGTGACCTACTATAACCCCGCCCAGCAGCAGGTGCAGCCAAAGCCCTCCCCACCCCGGAGGACTCCCCAGCCAGTCACCATCAAGCCCCCTCCACCTGAGGTTGTAAGCAGGGGTTCCAGTTAA MKTKFCTGGEAEPSPLGLLLSCGSGSAAPAPGVGQQRDAASDLESKQLGGQQPPLALPPPPPLPLPLPLPQPPPPQPPADEQPEPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQGLGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTRTKVGDAVKLAEEVPPPPEGLIPAPPVPETTPTPPTKTGTWEAPVDSSTSGLEQDVAQLNIAEQNWSPGQPSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS* FALSE FALSE NA NA TRUE hsa-mir-6866 chr17:40161933-40162001:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28647 GSK3B::GPR156 ENSG00000082701.17::ENSG00000175697.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 258 TRUE 513 TRUE 178 GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- GPR156 ENSG00000175697.11 protein_coding - - chr3:120164645-120285222:- chr3:120186783:- chr3:119883492-120004069:- chr3:119905630:- chr3:120013510 chr3:120236945 NA NA chr3:119732357 chr3:119955792 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase-PARTIAL|56-88~|2.4e-68^ABC1|58-85|0.00026^PK_Tyr_Ser-Thr-PARTIAL|59-88~|1.2e-26^Kinase-like-PARTIAL|60-88~|0.69 none ["GSK3B:ArcherDX_panel","GSK3B:FoundationOne_panel","GSK3B:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[70228] 15 10 15 2.24 ONLY_REF_SPLICE YES_LDAS 0.1815 GT 1.8892 AG 1.8892 ENST00000678439.1 1-88 ENST00000464295.6 475-2445 chr3|-|[0]120093347-120093434[0]<==>chr3|-|[2]120167032-120168384[0]|[2]120173312-120173470[0]|[2]120181125-120181361[0]|[2]120185299-120185394[0]|[2]120186658-120186783[0] atgtcagggcggcccagaaccacctcctttgcggagagctgcaagccggtgcagcagccttcagcttttggcagcatgaaagttagcaATTATCAAAGACCTGCAGTTGCTGGGGTTGGTGGCAGCCCTGTTGATGGCTGATGTGATCCTGCTCATGACGTGGGTGCTGACTGATCCCATCCAGTGCCTCCAGATTCTCAGTGTCAGTATGACGGTGACAGGGAAAGACGTGTCCTGCACTTCGACCAGCACCCACTTCTGTGCTTCCCGGTATTCCGATGTTTGGATTGCTCTCATTTGGGGATGCAAGGGTCTGCTCCTGCTGTATGGTGCCTACCTGGCTGGCCTGACTGGCCATGTCAGCTCCCCTCCTGTGAATCAGTCCTTAACCATCATGGTGGGGGTCAACCTCCTTGTACTGGCTGCTGGGCTGCTTTTTGTAGTCACCAGATACTTGCATTCCTGGCCCAACCTGGTCTTTGGACTCACATCTGGAGGGATCTTTGTTTGTACAACTACAATCAACTGCTTCATCTTCATTCCCCAGCTGAAGCAATGGAAGGCATTTGAAGAGGAAAACCAAACAATCAGACGCATGGCCAAATATTTCAGCACTCCCAACAAAAGCTTCCATACCCAGTATGGTGAGGAGGAGAACTGCCACCCGAGGGGAGAGAAAAGCTCCATGGAGAGGCTCCTCACAGAAAAAAATGCTGTGATTGAAAGCCTGCAGGAACAAGTAAACAACGCCAAAGAGAAGATTGTGAGGCTGATGTCAGCTGAGTGCACCTATGACCTCCCAGAGGGGGCTGCCCCACCTGCCTCTTCCCCGAACAAGGACGTCCAGGCGGTAGCCTCGGTCCACACCCTGGCAGCTGCTCAGGGGCCTTCGGGTCACCTCTCTGACTTTCAGAATGATCCTGGCATGGCTGCCCGGGATTCCCAGTGCACTTCAGGGCCCTCCTCATATGCACAAAGCCTTGAGGGGCCTGGGAAGGACTCCAGCTTCTCCCCAGGGAAGGAGGAGAAGATATCTGACTCAAAAGACTTTTCTGATCATTTAGACTCAGGTTGTAGCCAGAAGCCATGGACTGAGCAAAGCCTGGGTCCAGAAAGAGGAGACCAAGTCCCCATGAACCCCAGCCAGAGTCTCCTACCAGAAAGAGGCGGCTCAGATCCCCAGAGACAGAGGCATCTGGAGAACTCAGAGGAGCCCCCAGAGCGGCGGTCACGGGTTAGTTCAGTAATCAGGGAGAAACTTCAGGAGGTCTTACAAGATCTGGGCCTGGGCCCTGAGGCTTCCCTCTCCACCGCCCCCTCTTGTCATCAGCAAACCTGGAAGAACAGTGCTGCCTTCAGCCCCCAAAAGATGCCCCTCTCCAAGGAGCTCGGCTTTAGCCCTTACATGGTGAGGAGAAGGCGGGCAGCTCAGCGGGCCCGCTCACACTTTCCTGGCTCTGCACCCTCATCTGTGGGGCATCGGGCAAACAGGACTGTTCCTGGGGCACACAGCAGGCTACATGTGCAGAATGGGGACAGCCCCAGCCTGGCCCCACAAACTACTGATTCCAGAGTACGAAGACCTTCTTCCAGGAAGCCTTCACTACCTTCAGATCCTCAAGACAGACCAGGTACCCTGGAGGGCAGCAAACAAAGCCAGACAGAGCCCGAGGGGGCTAGAGGGAGCAAAGCAGCCTTTCTTCGCCAGCCTTCTGGTTCTGGCCGGGCCCCAAGTCCTGCTGCCCCATGCCTCTCCAAAGCCTCACCTGACTTGCCTGAACAGTGGCAGCTGTGGCCCCCAGTGCCCTCAGGCTGTGCCTCCCTGTCTTCTCAACACAGCTATTTTGATACTGAGTCCAGCAGCTCAGATGAGTTCTTCTGCCGCTGCCACCGGCCCTACTGTGAAATCTGCTTCCAGAGCTCTTCTGACTCTAGTGACAGTGGCACATCAGACACTGACCCTGAGCCTACTGGGGGGCTGGCTTCCTGGGAAAAGCTGTGGGCCCGCTCCAAGCCTATTGTGAACTTCAAAGATGACTTGAAACCCACGCTGGTGTGA MSGRPRTTSFAESCKPVQQPSAFGSMKVSNYQRPAVAGVGGSPVDG*CDPAHDVGAD*SHPVPPDSQCQYDGDRERRVLHFDQHPLLCFPVFRCLDCSHLGMQGSAPAVWCLPGWPDWPCQLPSCESVLNHHGGGQPPCTGCWAAFCSHQILAFLAQPGLWTHIWRDLCLYNYNQLLHLHSPAEAMEGI*RGKPNNQTHGQIFQHSQQKLPYPVW*GGELPPEGREKLHGEAPHRKKCCD*KPAGTSKQRQREDCEADVS*VHL*PPRGGCPTCLFPEQGRPGGSLGPHPGSCSGAFGSPL*LSE*SWHGCPGFPVHFRALLICTKP*GAWEGLQLLPREGGEDI*LKRLF*SFRLRL*PEAMD*AKPGSRKRRPSPHEPQPESPTRKRRLRSPETEASGELRGAPRAAVTG*FSNQGETSGGLTRSGPGP*GFPLHRPLLSSANLEEQCCLQPPKDAPLQGARL*PLHGEEKAGSSAGPLTLSWLCTLICGASGKQDCSWGTQQATCAEWGQPQPGPTNY*FQSTKTFFQEAFTTFRSSRQTRYPGGQQTKPDRARGG*REQSSLSSPAFWFWPGPKSCCPMPLQSLT*LA*TVAAVAPSALRLCLPVFSTQLF*Y*VQQLR*VLLPLPPALL*NLLPELF*L**QWHIRH*P*AYWGAGFLGKAVGPLQAYCELQR*LETHAGV FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 119562102 FALSE 119963325 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 28649 DHX30::SMARCC1 ENSG00000132153.15::ENSG00000173473.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 267 FALSE NA FALSE NA DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47841178:+ chr3:47844399-47891685:+ chr3:47882668:+ SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47670717:- chr3:47626759-47823596:- chr3:47712207:- chr3:47841378 chr3:47674556 NA NA chr3:47882868 chr3:47716046 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_19|50-79|3.5^dsrm|81-147|6.6e-05^Dicer_dimer|106-147|0.046^dsrm|274-340|0.00013^HA2_C|277-334|6.2^Dicer_dimer|322-355|3.3e-05^AAA_16|469-600|1.5e-05^DEAD|470-623|1.2e-13^nSTAND3|470-507|4.2e-07^AAA_23|472-493|0.00021^AAA_19|473-600|7.5e-06^AAA_22|478-592|5.8e-06^Bombolitin|653-660|0.00087^Helicase_C-PARTIAL|692-752~|7.9e-15 none ["DEEPEST2019","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.02Mb];LOCAL_INVERSION:+:-:[20803] 13 4 13 4 ONLY_REF_SPLICE YES_LDAS 0.1789 GT 1.9329 AG 1.8256 ENST00000457607.1 1-752 ENST00000254480.10 1840-3318 chr3|+|[0]47825040-47825247[0]|[1]47827347-47827477[2]|[0]47829024-47829134[2]|[0]47840877-47841178[1]<==>chr3|-|[2]47588209-47588306[1]|[0]47590661-47590837[1]|[0]47610066-47610327[0]|[2]47622207-47622341[0]|[2]47635190-47635344[1]|[0]47636022-47636136[0]|[2]47638725-47638780[1]|[0]47661294-47661455[1]|[0]47662334-47662592[0]|[2]47670658-47670717[0] atggcggccgctaggagactcatggcgctggccgccggcatctctccgcgcctgcagccgctgggtccccgcgctgctgggcgacagggtcgctcgcgcggcttctcttcaagctgcgcccaccccgaccacaccaaggaagccgccgaggccgagtcagggatggcccccggcgggcctggggaaggcgacggaagcttggtgaacgcttctagggacctattaaaagagttcccacagcccaaaaatcttctcaacagtgtgattggaagagccctcggcatctcacatgcaaaagacaaactagtctacgtgcacacaaatggaccgaagaaaaagaaagtcacactgcacataaaatggcccaagagcgtggaggtagaaggctatggcagcaagaagatcgatgctgagcggcaggctgcagctgcagcctgccagctgttcaagggttggggtctgctaggtccccggaatgagttgtttgacgcagccaaataccgagtgctagctgatcgctttggctcccctgccgacagctggtggcgtccggaacccaccatgccccctacttcctggcggcagctgaatccagagagtattcgaccagggggacctgggggcctatcccgctctttaggccgggaagaagaggaggacgaggaggaagagctagaagaagggaccatagatgttaccgacttcttgtccatgacccagcaggattcccacgctccactcagggactcaagAGTAAAGGTGCTAGTGCTGGAAGAGAATGGACTGAACAGGAGACCCTTCTACTCCTGGAGGCCCTGGAGATGTACAAGGATGATTGGAACAAAGTGTCGGAACATGTTGGAAGTCGTACTCAGGATGAATGCATCCTCCACTTTTTGAGACTTCCCATTGAGGACCCATACCTTGAGAATTCAGATGCTTCCCTTGGGCCTTTGGCCTACCAGCCTGTCCCCTTCAGTCAGTCAGGAAATCCAGTTATGAGTACTGTTGCTTTTTTGGCATCTGTGGTGGACCCTCGCGTGGCATCTGCTGCAGCAAAAGCGGCTTTGGAGGAGTTTTCTCGGGTCCGGGAGGAGGTACCACTGGAATTGGTTGAAGCTCATGTCAAGAAAGTACAAGAAGCAGCACGAGCCTCTGGGAAAGTGGATCCCACCTACGGTCTGGAGAGCAGCTGCATTGCAGGCACAGGGCCCGATGAGCCAGAGAAGCTTGAAGGAGCTGAAGAGGAAAAAATGGAAGCCGACCCTGATGGTCAGCAGCCTGAAAAGGCAGAAAATAAAGTGGAAAATGAAACGGATGAAGGTGATAAAGCACAAGATGGAGAAAATGAAAAAAATAGTGAAAAGGAACAGGATAGTGAAGTGAGTGAGGATACCAAATCAGAAGAAAAGGAGACTGAAGAGAACAAAGAACTCACTGATACATGTAAAGAAAGAGAAAGTGATACTGGGAAGAAGAAAGTAGAACATGAAATTTCCGAAGGAAATGTTGCCACAGCCGCAGCAGCTGCTCTTGCCTCAGCGGCTACCAAAGCCAAGCACCTGGCTGCAGTGGAAGAAAGAAAGATCAAGTCCCTGGTAGCTCTCTTGGTTGAGACACAAATGAAGAAACTAGAGATCAAACTTCGACATTTTGAAGAGCTGGAAACTATCATGGACAGAGAGAAAGAAGCTCTAGAACAACAGAGGCAGCAGTTGCTTACTGAACGCCAAAACTTCCACATGGAACAGCTGAAGTATGCTGAATTACGAGCACGACAGCAAATGGAACAGCAGCAGCATGGCCAGAACCCTCAACAGGCACACCAGCACTCAGGAGGACCTGGCCTGGCCCCACTTGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAACAGCCCCCTCCCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCCCAGCCAGGTCAGATACCAGGCCCAGGTTCCATGATGCCCGGGCAGCACATGCCAGGCCGCATGATTCCCACTGTTGCAGCCAACATCCACCCCTCTGGGAGTGGCCCTACCCCTCCTGGCATGCCACCAATGCCAGGAAACATCTTAGGACCCCGGGTACCCCTGACAGCACCTAACGGCATGTATCCCCCTCCACCACAGCAGCAGCCACCGCCACCACCACCTGCAGATGGGGTCCCTCCGCCTCCTGCTCCTGGCCCGCCAGCCTCAGCTGCTCCTTAG MAAARRLMALAAGISPRLQPLGPRAAGRQGRSRGFSSSCAHPDHTKEAAEAESGMAPGGPGEGDGSLVNASRDLLKEFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDAAKYRVLADRFGSPADSWWRPEPTMPPTSWRQLNPESIRPGGPGGLSRSLGREEEEDEEEELEEGTIDVTDFLSMTQQDSHAPLRDSRVKVLVLEENGLNRRPFYSWRPWRCTRMIGTKCRNMLEVVLRMNASSTF*DFPLRTHTLRIQMLPLGLWPTSLSPSVSQEIQL*VLLLFWHLWWTLAWHLLQQKRLWRSFLGSGRRYHWNWLKLMSRKYKKQHEPLGKWIPPTVWRAAALQAQGPMSQRSLKELKRKKWKPTLMVSSLKRQKIKWKMKRMKVIKHKMEKMKKIVKRNRIVK*VRIPNQKKRRLKRTKNSLIHVKKEKVILGRRK*NMKFPKEMLPQPQQLLLPQRLPKPSTWLQWKKERSSPW*LSWLRHK*RN*RSNFDILKSWKLSWTERKKL*NNRGSSCLLNAKTSTWNS*SMLNYEHDSKWNSSSMARTLNRHTSTQEDLAWPHLEQQGTLA*CLINSPLPTL*CTTRCHHLIHPSQVRYQAQVP*CPGSTCQAA*FPLLQPTSTPLGVALPLLACHQCQETS*DPGYP*QHLTACIPLHHSSSHRHHHLQMGSLRLLLLARQPQLLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28653 MIPOL1::ENSG00000286099 ENSG00000151338.21::ENSG00000286099.1 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37500138:+ chr14:37667099-38048330:+ chr14:37969343:+ ENSG00000286099 ENSG00000286099.1 lncRNA + + chr14:40630006-40905513:+ chr14:40767815:+ chr14:41099211-41374718:+ chr14:41237020:+ chr14:37509772,chr14:37509707,chr14:37509707,chr14:37509773 chr14:40759545,chr14:40759545,chr14:40759547,chr14:40759543 NA NA chr14:37978977,chr14:37978912,chr14:37978912,chr14:37978978 chr14:41228750,chr14:41228750,chr14:41228752,chr14:41228748 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1053 GT 1.5546 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28655 ACTN4::CDH13 ENSG00000130402.14::ENSG00000140945.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 269 FALSE NA FALSE NA ACTN4 ENSG00000130402.14 protein_coding + + chr19:38647649-38731589:+ chr19:38647907:+ chr19:39138289-39222229:+ chr19:39138547:+ CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83032010:+ chr16:82660570-83834245:+ chr16:83065615:+ chr19:38692246,chr19:38692242,chr19:38692244 chr16:82973053,chr16:82973026,chr16:82973048 NA NA chr19:39182886,chr19:39182882,chr19:39182884 chr16:83006658,chr16:83006631,chr16:83006653 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH|53-97|1.4e-13 Cadherin|299-400|5.5e-20^Cadherin_3-PARTIAL|~299-335|0.04^RET_CLD1-PARTIAL|~299-353|0.58^Cadherin_2|344-371|0.41^Big_9|393-454|0.056^Cadherin_3|394-440|8.5e-05^Cadherin_4|394-451|0.011^Cadherin|415-516|9.9e-19^Cadherin_3|506-569|0.0016^Big_9|508-580|5e-07^Cadherin_4|509-580|8.6e-09^Cadherin_pro|530-556|3.4^Cadherin|534-622|5.8e-19^Cadherin_2|553-589|0.48^BACON_2|558-582|0.00016^Big_9|615-670|0.97^Cadherin_3|616-661|0.0068^Cadherin_4|617-668|0.14^Cu-binding_MopE|626-642|3.5e-05^Cadherin|636-727|1e-13^RET_CLD1|681-743|0.56 ["CDH13:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr16] 9 11 9 10.83 ONLY_REF_SPLICE YES_LDAS 0.2087 GT 1.5656 AG 1.9656 ENST00000589528.1 1-170 ENST00000268613.14 299-2283 chr19|+|[1]38647738-38647907[2]<==>chr16|+|[1]83032010-83032218[2]|[0]83125385-83125501[2]|[0]83217345-83217497[2]|[0]83344862-83345006[0]|[1]83486477-83486655[2]|[0]83602454-83602594[2]|[0]83670790-83670972[2]|[0]83678208-83678461[1]|[2]83748108-83748250[0]|[1]83779968-83780201[0]|[1]83783254-83783472[0]|[1]83795023-83795030[2] gcggcggaatggtggactaccacgcggcgaaccagtcgtaccagtacggccccagcagcgcgggcaatggcgctggcggcgggggcagcatgggcgactacatggcccaggaggacgactgggaccgggacctgctgctggacccggcctgggagaagcagcagcgcaagTGACCTTCAGTGACTGTAAGGGAAACGACAAGCTACGCTATGAGGTCTCGAGCCCATACTTCAAGGTGAACAGCGATGGCGGCTTAGTTGCTCTGAGAAACATAACTGCAGTGGGCAAAACTCTGTTCGTCCATGCACGGACCCCCCATGCGGAAGATATGGCAGAACTCGTGATTGTCGGGGGGAAAGACATCCAGGGCTCCTTGCAGGATATATTTAAATTTGCAAGAACTTCTCCTGTCCCAAGACAAAAGAGGTCCATTGTGGTATCTCCCATTTTAATTCCAGAGAATCAGAGACAGCCTTTCCCAAGAGATGTTGGCAAGGTAGTCGATAGTGACAGGCCAGAAAGGTCCAAGTTCCGGCTCACTGGAAAGGGAGTGGATCAAGAGCCTAAAGGAATTTTCAGAATCAATGAGAACACAGGGAGCGTCTCCGTGACACGGACCTTGGACAGAGAAGTAATCGCTGTTTATCAACTATTTGTGGAGACCACTGATGTCAATGGCAAAACTCTCGAGGGGCCGGTGCCTCTGGAAGTCATTGTGATTGATCAGAATGACAACCGACCGATCTTTCGGGAAGGCCCCTACATCGGCCACGTCATGGAAGGGTCACCCACAGGCACCACAGTGATGCGGATGACAGCCTTTGATGCAGATGACCCAGCCACCGATAATGCCCTCCTGCGGTATAATATCCGTCAGCAGACGCCTGACAAGCCATCTCCCAACATGTTCTACATCGATCCTGAGAAAGGAGACATTGTCACTGTTGTGTCACCTGCGCTGCTGGACCGAGAGACTCTGGAAAATCCCAAGTATGAACTGATCATCGAGGCTCAAGATATGGCTGGACTGGATGTTGGATTAACAGGCACGGCCACAGCCACGATCATGATCGATGACAAAAATGATCACTCACCAAAATTCACCAAGAAAGAGTTTCAAGCCACAGTCGAGGAAGGAGCTGTGGGAGTTATTGTCAATTTGACAGTTGAAGATAAGGATGACCCCACCACAGGTGCATGGAGGGCTGCCTACACCATCATCAACGGAAACCCCGGGCAGAGCTTTGAAATCCACACCAACCCTCAAACCAACGAAGGGATGCTTTCTGTTGTCAAACCATTGGACTATGAAATTTCTGCCTTCCACACCCTGCTGATCAAAGTGGAAAATGAAGACCCACTCGTACCCGACGTCTCCTACGGCCCCAGCTCCACAGCCACCGTCCACATCACTGTCCTGGATGTCAACGAGGGCCCAGTCTTCTACCCAGACCCCATGATGGTGACCAGGCAGGAGGACCTCTCTGTGGGCAGCGTGCTGCTGACAGTGAATGCCACGGACCCCGACTCCCTGCAGCATCAAACCATCAGGTATTCTGTTTACAAGGACCCAGCAGGTTGGCTGAATATTAACCCCATCAATGGGACTGTTGACACCACAGCTGTGCTGGACCGTGAGTCCCCATTTGTCGACAACAGCGTGTACACTGCTCTCTTCCTGGCAATTGACAGTGGCAACCCTCCCGCTACGGGCACTGGGACTTTGCTGATAACCCTGGAGGACGTGAATGACAATGCCCCGTTCATTTACCCCACAGTAGCTGAAGTCTGTGATGATGCCAAAAACCTCAGTGTAGTCATTTTGGGAGCATCAGATAAGGATCTTCACCCGAATACAGATCCTTTCAAATTTGAAATCCACAAACAAGCTGTTCCTGATAAAGTCTGGAAGATCTCCAAGATCAACAATACACACGCCCTGGTAAGCCTTCTTCAAAATCTGAACAAAGCAAACTACAACCTGCCCATCATGGTGACAGATTCAGGGAAACCACCCATGACGAATATCACAGATCTCAGGGTACAAGTGTGCTCCTGCAGGAATTCCAAAGTGGACTGCAACGCGGCAGGGGCCCTGCGCTTCAGCCTGCCCTCAGTCCTGCTCCTCAGCCTCTTCAGCTTAGCTTGTCTGTGA GGMVDYHAANQSYQYGPSSAGNGAGGGGSMGDYMAQEDDWDRDLLLDPAWEKQQRK*PSVTVRETTSYAMRSRAHTSR*TAMAA*LL*ET*LQWAKLCSSMHGPPMRKIWQNS*LSGGKTSRAPCRIYLNLQELLLSQDKRGPLWYLPF*FQRIRDSLSQEMLAR*SIVTGQKGPSSGSLEREWIKSLKEFSESMRTQGASP*HGPWTEK*SLFINYLWRPLMSMAKLSRGRCLWKSL*LIRMTTDRSFGKAPTSATSWKGHPQAPQ*CG*QPLMQMTQPPIMPSCGIISVSRRLTSHLPTCSTSILRKETLSLLCHLRCWTERLWKIPSMN*SSRLKIWLDWMLD*QARPQPRS*SMTKMITHQNSPRKSFKPQSRKELWELLSI*QLKIRMTPPQVHGGLPTPSSTETPGRALKSTPTLKPTKGCFLLSNHWTMKFLPSTPC*SKWKMKTHSYPTSPTAPAPQPPSTSLSWMSTRAQSSTQTP*W*PGRRTSLWAACC*Q*MPRTPTPCSIKPSGILFTRTQQVG*ILTPSMGLLTPQLCWTVSPHLSTTACTLLSSWQLTVATLPLRALGLC**PWRT*MTMPRSFTPQ*LKSVMMPKTSV*SFWEHQIRIFTRIQILSNLKSTNKLFLIKSGRSPRSTIHTPW*AFFKI*TKQTTTCPSW*QIQGNHP*RISQISGYKCAPAGIPKWTATRQGPCASACPQSCSSASSA*LVC FALSE FALSE NA NA TRUE hsa-mir-3182 chr16:83508346-83508408:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28656 MAP4::DHX30 ENSG00000047849.22::ENSG00000132153.15 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 270 FALSE NA FALSE NA MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47914817:- chr3:47892180-48130762:- chr3:47956307:- DHX30 ENSG00000132153.15 protein_coding + + chr3:47802909-47850195:+ chr3:47840877:+ chr3:47844399-47891685:+ chr3:47882367:+ chr3:47897135 chr3:47837624 NA NA chr3:47938625 chr3:47879114 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SdiA-regulated|1401-1447|2e-05 AAA_16|441-572|1.4e-05^DEAD|442-595|1.2e-13^nSTAND3|442-479|4.1e-07^AAA_23|444-465|0.00021^AAA_19|445-572|7.3e-06^AAA_22|450-564|5.6e-06^Bombolitin|625-632|0.00085^Helicase_C|664-786|7.7e-15^Dicer_dimer|821-837|3.7^HA2_N|851-876|1.6e-05^Bombolitin|868-877|2^HA2_C|880-938|6.9e-12^OB_NTP_bind|1016-1102|2.3e-11^AAA_16|1137-1145|1.9 ["MAP4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];LOCAL_INVERSION:-:+:[495] 8 4 8 2.91 ONLY_REF_SPLICE YES_LDAS 0.1148 GT 1.9656 AG 1.6895 ENST00000426837.6 1-2050 ENST00000446256.6 367-3585 chr3|-|[0]47914817-47914939[1]|[0]47915951-47917174[1]|[0]47918719-47918841[1]|[0]47921765-47921878[1]|[0]47928228-47928350[1]|[0]47977865-47977933[1]|[0]47987383-47987433[1]|[0]47998638-47998860[0]<==>chr3|+|[0]47840877-47841178[1]|[2]47841617-47841737[2]|[0]47843106-47843255[2]|[0]47845700-47845852[2]|[0]47846165-47847001[2]|[0]47847273-47847348[0]|[1]47847432-47847536[0]|[1]47847781-47847956[2]|[0]47848180-47848386[2]|[0]47848469-47848550[0]|[1]47848624-47848817[2]|[0]47848920-47849079[0]|[1]47849192-47849349[2]|[0]47849451-47849554[1]|[2]47849630-47849769[0]|[1]47849867-47850120[2] atggctgacctcagtcttgcagatgcattaacagaaccatctccagacattgagggagagataaagcgggacttcattgccacactagaggcagaggcctttgatgatgttgtgggagaaactgttggaaaaacagactatattcctctcctggatgttgatgagaaaaccgggaactcagagtcaaagaagaaaccgtgctcagaaactagccagattgaagacctcccactacccccacaccctgccagcctttcttttcatcttcctcttgatactccatcttctaaaccaacactcctagccaatggtggtcatggagtagaagggagcgatactacagggtctccaactgaattccttgaagagaaaatggcctaccaggaatacccaaatagccagaactggccagaagataccaacttttgtttccaacctgagcaagtggtcgatcctatccagactgatccctttaagatgtaccatgatgatgacctggcagatttggtctttccctccagtgcgacagctgatacttcaatatttgcaggacaaaatgatcccttgaaagacagttacggtatgtctccctgcaacacagctgttgtacctcaggggtggtctgtggaagccttaaactctccacactcagagtcctttgtttccccagaggctgttgcagaacctcctcagccaacggcagttcccttagagctagccaaggagatagaaatggcatcagaagagaggccaccagcacaagcattggaaataatgatgggactgaagactactgacatggcaccatctaaagaaacagagatggccctcgccaaggacatggcactagctacaaaaaccgaggtggcattggctaaagatatggaatcacccaccaaattagatgtgacactggccaaggacatgcagccatccatggaatcagatatggccctagtcaaggacatggaactacccacagaaaaagaagtggccctggttaaggatgtcagatggcccacagaaacagatgtatcttcagccaagaatgtggtactgcccacagaaacagaggtagccccagccaaggatgtgacactgttgaaagaaacagagagggcatctcctataaaaatggacttagccccttccaaggacatgggaccacccaaagaaaacaagaaagaaacagagagggcatctcctataaaaatggacttggctccttccaaggacatgggaccacccaaagaaaacaagatagtcccagccaaggatttggtattactctcagaaatagaggtggcacaggctaatgacattatatcatccacagaaatatcctctgctgagaaggtggctttgtcctcagaaacagaggtagccctggccagggacatgacactgcccccggaaaccaacgtgatcttgaccaaggataaagcactacctttagaagcagaggtggccccagtcaaggacatggctcaactcccagaaacagaaatagccccggccaaggatgtggctccgtccacagtaaaagaagtgggcttgttgaaggacatgtctccactatcagaaacagaaatggctctgggcaaggatgtgactccacctccagaaacagaagtagttctcatcaagaacgtatgtctgcctccagaaatggaggtggccctgactgaggatcaggtcccagccctcaaaacagaagcacccctggctaaggatggggttctgaccctggccaacaatgtgactccagccaaagatgttccaccactctcagaaacagaggcaacaccagttccaattaaagacatggaaattgcacaaacacaaaaaggaataagtgaggattcccatttagaatctctgcaggatgtggggcagtcagctgcacctactttcatgatttcaccagaaaccgtcacaggaacggggaaaaagtgcagcttgccggccgaggaggattctgtgttagaaaaactaggggaaaggaaaccatgcaacagtcaaccttctgagctttcttcagagacctcagGGTTGGGGTCTGCTAGGTCCCCGGAATGAGTTGTTTGACGCAGCCAAATACCGAGTGCTAGCTGATCGCTTTGGCTCCCCTGCCGACAGCTGGTGGCGTCCGGAACCCACCATGCCCCCTACTTCCTGGCGGCAGCTGAATCCAGAGAGTATTCGACCAGGGGGACCTGGGGGCCTATCCCGCTCTTTAGGCCGGGAAGAAGAGGAGGACGAGGAGGAAGAGCTAGAAGAAGGGACCATAGATGTTACCGACTTCTTGTCCATGACCCAGCAGGATTCCCACGCTCCACTCAGGGACTCAAGGGGGAGTTCCTTTGAGATGACAGATGACGACAGTGCCATTAGGGCTCTGACCCAGTTTCCACTTCCCAAGAACCTTCTGGCCAAGGTGATTCAGATTGCAACGTCATCCTCCACAGCTAAGAACCTCATGCAGTTCCATACTGTGGGCACCAAGACCAAGCTGTCTACACTCACCCTGCTCTGGCCCTGCCCCATGACCTTTGTTGCCAAAGGGCGCCGCAAAGCAGAGGCTGAGAATAAGGCGGCAGCCTTGGCCTGCAAGAAACTGAAGAGCCTGGGCCTGGTGGACAGGAACAACGAACCGCTTACACACGCCATGTATAACCTGGCCTCTTTGCGTGAGCTGGGTGAGACCCAGCGCCGACCATGCACCATCCAGGTGCCCGAGCCCATCCTCCGCAAGATAGAGACCTTCCTGAACCATTACCCTGTGGAGAGTTCATGGATCGCCCCAGAACTCCGGCTGCAGAGTGATGACATCTTGCCCTTGGGCAAGGACTCAGGGCCTCTGAGTGACCCTATCACAGGCAAGCCCTATGTGCCCCTGTTGGAAGCAGAGGAGGTACGTCTCAGCCAGAGTCTGCTAGAACTGTGGCGGCGGCGAGGGCCGGTCTGGCAGGAGGCCCCCCAGCTACCTGTGGACCCACATCGGGACACCATCCTCAACGCCATTGAGCAGCACCCGGTGGTGGTCATCTCTGGGGACACGGGCTGTGGGAAGACCACGCGCATCCCCCAGCTGTTGCTGGAGCGCTATGTGACCGAGGGCCGAGGTGCCCGCTGCAATGTTATCATCACCCAACCTCGCCGCATCTCTGCTGTGTCTGTGGCACAGCGGGTCAGCCACGAACTGGGCCCCTCCCTGCGCCGGAATGTGGGCTTCCAGGTGCGGTTGGAAAGTAAGCCCCCATCCCGAGGCGGGGCCCTGCTCTTCTGCACTGTGGGTATCCTGCTGCGTAAGCTGCAGAGCAACCCCAGCCTGGAGGGCGTGAGCCACGTCATCGTGGATGAGGTGCATGAGCGGGACGTGAACACAGACTTTCTGCTGATCCTGCTCAAGGGCCTGCAGCGGCTCAACCCGGCCCTGCGGCTGGTGCTCATGAGTGCCACAGGGGACAATGAGCGCTTCTCCCGATACTTTGGTGGCTGCCCCGTCATCAAGGTGCCTGGCTTCATGTACCCAGTCAAGGAGCACTACCTAGAGGACATCCTGGCCAAGTTGGGCAAGCACCAGTACCTGCACCGGCACCGGCACCATGAGTCTGAGGATGAATGCGCACTCGATTTGGACCTTGTGACTGATCTGGTTCTGCACATCGATGCTCGCGGGGAACCAGGTGGGATCCTGTGCTTCCTGCCTGGGTGGCAGGAGATCAAAGGAGTGCAGCAGCGCCTCCAGGAGGCCCTGGGCATGCACGAGAGCAAGTACCTCATCCTGCCAGTGCACTCCAACATCCCCATGATGGATCAGAAGGCCATATTCCAGCAGCCTCCAGTTGGGGTGCGCAAGATTGTCTTGGCCACCAACATTGCTGAGACTTCCATCACAATCAATGACATCGTGCATGTGGTGGACAGTGGGCTGCACAAGGAAGAACGCTATGACCTGAAGACCAAGGTGTCCTGCCTGGAGACAGTGTGGGTATCAAGAGCCAATGTGATCCAGCGCCGGGGCCGGGCGGGCCGCTGCCAGTCCGGCTTTGCCTACCACTTGTTCCCTCGAAGCCGGCTGGAGAAAATGGTCCCTTTCCAAGTGCCAGAGATCCTGCGCACACCTCTTGAGAACCTGGTGCTGCAAGCGAAAATCCACATGCCTGAGAAGACGGCGGTGGAGTTCCTGTCCAAGGCTGTGGACAGTCCAAACATCAAGGCAGTGGACGAGGCTGTGATCTTGCTCCAGGAGATCGGGGTGCTGGACCAGCGGGAGTACCTGACTACCCTGGGGCAGCGCCTGGCTCACATCTCCACCGACCCCCGGTTGGCCAAGGCCATTGTGTTGGCTGCCATCTTCCGTTGCCTGCACCCACTACTGGTGGTCGTTTCCTGCCTCACCCGGGACCCCTTCAGCAGCAGCCTACAGAACCGGGCAGAGGTGGACAAGGTGAAAGCACTGTTGAGCCATGACAGCGGCAGTGACCACCTGGCCTTTGTGCGGGCTGTCGCCGGCTGGGAGGAGGTGCTGCGTTGGCAGGACCGCAGCTCCCGGGAGAATTACCTGGAGGAAAACCTGCTGTACGCACCCAGCCTGCGCTTCATCCACGGACTCATCAAGCAGTTCTCAGAGAACATTTATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAGTACAGTGAGGAGGAGGAGCTGGTGAAGGGCGTGCTGATGGCCGGCCTCTACCCCAACCTCATCCAGGTGAGGCAGGGCAAGGTCACCCGGCAGGGGAAGTTCAAGCCCAACAGCGTCACATATAGGACCAAATCAGGCAACATCCTGCTGCACAAGTCGACCATTAACAGGGAGGCCACACGGTTACGGAGCCGATGGCTGACGTATTTCATGGCAGTCAAGTCCAATGGCAGCGTCTTCGTCCGGGACTCCTCTCAGGTGCACCCGCTAGCTGTGCTGCTGCTGACCGACGGGGACGTGCACATCCGTGATGACGGGCGCCGGGCCACCATCTCACTGAGCGACAGTGACCTGCTGCGGCTGGAGGGTGACTCGCGTACCGTGCGGCTGCTGAAGGAGCTGCGGCGGGCCCTGGGCCGCATGGTGGAGCGGAGCCTGCGCAGCGAGCTGGCTGCACTTCCCCCCAGCGTACAGGAGGAGCACGGGCAGCTGCTTGCGCTACTGGCAGAGCTGCTGCGAGGACCCTGTGGCAGCTTTGATGTGCGCAAGACAGCTGACGACTGA MADLSLADALTEPSPDIEGEIKRDFIATLEAEAFDDVVGETVGKTDYIPLLDVDEKTGNSESKKKPCSETSQIEDLPLPPHPASLSFHLPLDTPSSKPTLLANGGHGVEGSDTTGSPTEFLEEKMAYQEYPNSQNWPEDTNFCFQPEQVVDPIQTDPFKMYHDDDLADLVFPSSATADTSIFAGQNDPLKDSYGMSPCNTAVVPQGWSVEALNSPHSESFVSPEAVAEPPQPTAVPLELAKEIEMASEERPPAQALEIMMGLKTTDMAPSKETEMALAKDMALATKTEVALAKDMESPTKLDVTLAKDMQPSMESDMALVKDMELPTEKEVALVKDVRWPTETDVSSAKNVVLPTETEVAPAKDVTLLKETERASPIKMDLAPSKDMGPPKENKKETERASPIKMDLAPSKDMGPPKENKIVPAKDLVLLSEIEVAQANDIISSTEISSAEKVALSSETEVALARDMTLPPETNVILTKDKALPLEAEVAPVKDMAQLPETEIAPAKDVAPSTVKEVGLLKDMSPLSETEMALGKDVTPPPETEVVLIKNVCLPPEMEVALTEDQVPALKTEAPLAKDGVLTLANNVTPAKDVPPLSETEATPVPIKDMEIAQTQKGISEDSHLESLQDVGQSAAPTFMISPETVTGTGKKCSLPAEEDSVLEKLGERKPCNSQPSELSSETSGLGSARSPE*VV*RSQIPSAS*SLWLPCRQLVASGTHHAPYFLAAAESREYSTRGTWGPIPLFRPGRRGGRGGRARRRDHRCYRLLVHDPAGFPRSTQGLKGEFL*DDR*RQCH*GSDPVSTSQEPSGQGDSDCNVILHS*EPHAVPYCGHQDQAVYTHPALALPHDLCCQRAPQSRG*E*GGSLGLQETEEPGPGGQEQRTAYTRHV*PGLFA*AG*DPAPTMHHPGARAHPPQDRDLPEPLPCGEFMDRPRTPAAE**HLALGQGLRASE*PYHRQALCAPVGSRGGTSQPESARTVAAARAGLAGGPPATCGPTSGHHPQRH*AAPGGGHLWGHGLWEDHAHPPAVAGALCDRGPRCPLQCYHHPTSPHLCCVCGTAGQPRTGPLPAPECGLPGAVGK*APIPRRGPALLHCGYPAA*AAEQPQPGGREPRHRG*GA*AGREHRLSADPAQGPAAAQPGPAAGAHECHRGQ*ALLPILWWLPRHQGAWLHVPSQGALPRGHPGQVGQAPVPAPAPAP*V*G*MRTRFGPCD*SGSAHRCSRGTRWDPVLPAWVAGDQRSAAAPPGGPGHAREQVPHPASALQHPHDGSEGHIPAASSWGAQDCLGHQHC*DFHHNQ*HRACGGQWAAQGRTL*PEDQGVLPGDSVGIKSQCDPAPGPGGPLPVRLCLPLVPSKPAGENGPFPSARDPAHTS*EPGAASENPHA*EDGGGVPVQGCGQSKHQGSGRGCDLAPGDRGAGPAGVPDYPGAAPGSHLHRPPVGQGHCVGCHLPLPAPTTGGRFLPHPGPLQQQPTEPGRGGQGESTVEP*QRQ*PPGLCAGCRRLGGGAALAGPQLPGELPGGKPAVRTQPALHPRTHQAVLREHL*GLPGGEALGLHPGLRPVQRVQ*GGGAGEGRADGRPLPQPHPGEAGQGHPAGEVQAQQRHI*DQIRQHPAAQVDH*QGGHTVTEPMADVFHGSQVQWQRLRPGLLSGAPASCAAADRRGRAHP**RAPGHHLTERQ*PAAAGG*LAYRAAAEGAAAGPGPHGGAEPAQRAGCTSPQRTGGARAAACATGRAAARTLWQL*CAQDS*RL FALSE FALSE NA NA TRUE hsa-mir-1226 chr3:47849555-47849629:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28657 EYA3::RCC1 ENSG00000158161.16::ENSG00000180198.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 266 TRUE 518 TRUE 181 EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28035544:- chr1:28296855-28415148:- chr1:28362055:- RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28529858:+ chr1:28832455-28865812:+ chr1:28856370:+ chr1:28032708,chr1:28032715,chr1:28032714 chr1:28513729,chr1:28513722,chr1:28513336 NA NA chr1:28359219,chr1:28359226,chr1:28359225 chr1:28840241,chr1:28840234,chr1:28839848 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Hydrolase-PARTIAL|304-361~|6.5e-16 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.42Mb] 8 7 8 2.95 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.8323 AG 1.8323 ENST00000373871.8 1-361 ENST00000486790.2 298-446 chr1|-|[0]28035544-28035680[2]|[1]28038839-28038905[1]|[0]28042571-28042650[2]|[1]28048383-28048426[0]|[2]28057994-28058026[0]<==>chr1|+|[0]28529858-28529939[0]|[1]28530523-28530573[0]|[1]28531803-28531818[1] atggaagaagagcaagatttaccagagcaaccagtgaaaaaagccaagatgcaggaatcaggagagcaaactataagtcaagtaagcaatccagatgtcagtgatcagaagcctgaaacatcaagccttgcttcaaaccttcccatgtcagaggaaattatgacatgcaccgattacatccctcgctcatccaatgattatacctcacaaatgtattctgcaaaaccttatgcacatattctctcagttcctgtttcggaaactgcttaccctggacagactcaataccagacactacagcagactcaaccctatgctgtctaccctcaggcaacccaaacgtatggactacctccttttgGACAGGAAGATGTCACCCAAGCGCATAGCTAAAAGAAGGTCCCCCCCAGCAGATGCCATCCCCAAAAGCAAGAAGGTGAAGGACACGAGGGCCGCTGCCTCCCGCCGCGTTCCTGGCGCCCGCTCCTGCCAAGTCTCACACAGGTCCCA MEEEQDLPEQPVKKAKMQESGEQTISQVSNPDVSDQKPETSSLASNLPMSEEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVSETAYPGQTQYQTLQQTQPYAVYPQATQTYGLPPFGQEDVTQAHS*KKVPPSRCHPQKQEGEGHEGRCLPPRSWRPLLPSLTQVP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28658 EYA3::RCC1 ENSG00000158161.16::ENSG00000180198.17 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 518 TRUE 181 EYA3 ENSG00000158161.16 protein_coding - - chr1:27970344-28088637:- chr1:28035544:- chr1:28296855-28415148:- chr1:28362055:- RCC1 ENSG00000180198.17 protein_coding + + chr1:28505943-28539300:+ chr1:28516725:+ chr1:28832455-28865812:+ chr1:28843237:+ chr1:28032708,chr1:28032715,chr1:28032714 chr1:28513729,chr1:28513722,chr1:28513336 NA NA chr1:28359219,chr1:28359226,chr1:28359225 chr1:28840241,chr1:28840234,chr1:28839848 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.42Mb] 8 10 8 7.05 ONLY_REF_SPLICE YES_LDAS 0.1584 GT 1.8323 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28659 EIF2AK3::PRKD3 ENSG00000172071.15::ENSG00000115825.11 UACC893 SRR8615337 SRR8670725 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 517 TRUE 180 EIF2AK3 ENSG00000172071.15 protein_coding - - chr2:88556741-88691518:- chr2:88613724:- chr2:88856259-88991036:- chr2:88913242:- PRKD3 ENSG00000115825.11 protein_coding - - chr2:37250502-37324833:- chr2:37317179:- chr2:37477645-37551976:- chr2:37544322:- chr2:88599812,chr2:88599814 chr2:37321933,chr2:37321932 NA NA chr2:88899330,chr2:88899332 chr2:37549076,chr2:37549075 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:51.23Mb] 6 8 6 4.41 ONLY_REF_SPLICE YES_LDAS 0.1096 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Eukaryotic translation initiation factor 2-alpha kinase 3 Other PEK PEK Q9NZJ5 TRUE FRAME_UNKNOWN Serine/threonine-protein kinase D3 CAMK PKD O94806 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28661 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 273 TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219492:+ chr17:38375556-38440388:+ chr17:38375744:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39694988:+ chr17:37844167-37886679:+ chr17:37851241:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB2:OncomapV4_panel","ERBB2:OncocartaV1_panel","ERBB2:ArcherDX_panel","ERBB2:Oncogene","ERBB2:FoundationOne_panel"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.49Mb] 59 16 59 12.62 ONLY_REF_SPLICE YES_LDAS 0.8654 GT 1.7819 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 28667 WIPF2::ERBB2 ENSG00000171475.14::ENSG00000141736.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 274 TRUE 534 TRUE 185 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40219517:+ chr17:38375556-38440388:+ chr17:38375769:+ ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39694988:+ chr17:37844167-37886679:+ chr17:37851241:+ chr17:40236384 chr17:39689871 NA NA chr17:38392636 chr17:37846124 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB2:OncomapV4_panel","ERBB2:OncocartaV1_panel","ERBB2:ArcherDX_panel","ERBB2:Oncogene","ERBB2:FoundationOne_panel"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.49Mb] 11 20 11 7.21 ONLY_REF_SPLICE YES_LDAS 0.22 GT 1.1589 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-4728 chr17:39726495-39726561:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation 28668 WARS2::AKT3 ENSG00000116874.12::ENSG00000117020.19 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 278 FALSE NA FALSE NA WARS2 ENSG00000116874.12 protein_coding - - chr1:119031216-119140654:- chr1:119140555:- chr1:119573839-119683277:- chr1:119683178:- AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243695716:- chr1:243651535-244014381:- chr1:243859018:- chr1:119081668,chr1:119081672 chr1:243827594,chr1:243827595 NA NA chr1:119624291,chr1:119624295 chr1:243990896,chr1:243990897 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame tRNA-synt_1b-PARTIAL|33-90~|1.4e-70 PH-PARTIAL|~47-105|1.9e-20^PH_20-PARTIAL|~47-74|6.8e-07^PH_11-PARTIAL|~47-103|0.00014^Pkinase|84-119|2.9^FTA2|142-183|0.00035^Pkinase|150-405|9.4e-83^PK_Tyr_Ser-Thr|151-388|1.8e-39^Kinase-like|152-178|0.41^PH|216-227|6.7^ABC1|223-295|3.3e-05^FTA2|253-279|0.0067^Kinase-like|255-384|4.1e-11^PH_11|342-359|4.4^Pkinase_C|426-473|7.7e-14 ["AKT3:Oncogene","AKT3:FoundationOne_panel","AKT3:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:124.35Mb] 9 0 9 0 ONLY_REF_SPLICE YES_LDAS 0.1087 GT 1.6729 AG 1.2419 ENST00000235521.5 1-90 ENST00000263826.12 47-1440 chr1|-|[2]119140555-119140644[0]<==>chr1|-|[2]243505249-243505334[1]|[0]243512324-243512426[0]|[2]243545510-243545597[2]|[1]243552729-243552943[0]|[2]243563720-243563848[0]|[2]243572926-243573048[0]|[2]243613671-243613739[0]|[2]243615096-243615161[0]|[2]243637611-243637742[0]|[2]243645893-243646037[2]|[1]243664772-243664883[1]|[0]243695591-243695716[1] atggcgctgcactcaatgcggaaagcgcgtgagcgctggagcttcatccgggcacttcataagggatccgcagctgctcccgctctccagGAGAATATATAAAAAACTGGAGGCCAAGATACTTCCTTTTGAAGACAGATGGCTCATTCATAGGATATAAAGAGAAACCTCAAGATGTGGATTTACCTTATCCCCTCAACAACTTTTCAGTGGCAAAATGCCAGTTAATGAAAACAGAACGACCAAAGCCAAACACATTTATAATCAGATGTCTCCAGTGGACTACTGTTATAGAGAGAACATTTCATGTAGATACTCCAGAGGAAAGGGAAGAATGGACAGAAGCTATCCAGGCTGTAGCAGACAGACTGCAGAGGCAAGAAGAGGAGAGAATGAATTGTAGTCCAACTTCACAAATTGATAATATAGGAGAGGAAGAGATGGATGCCTCTACAACCCATCATAAAAGAAAGACAATGAATGATTTTGACTATTTGAAACTACTAGGTAAAGGCACTTTTGGGAAAGTTATTTTGGTTCGAGAGAAGGCAAGTGGAAAATACTATGCTATGAAGATTCTGAAGAAAGAAGTCATTATTGCAAAGGATGAAGTGGCACACACTCTAACTGAAAGCAGAGTATTAAAGAACACTAGACATCCCTTTTTAACATCCTTGAAATATTCCTTCCAGACAAAAGACCGTTTGTGTTTTGTGATGGAATATGTTAATGGGGGCGAGCTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACACGTTTCTATGGTGCAGAAATTGTCTCTGCCTTGGACTATCTACATTCCGGAAAGATTGTGTACCGTGATCTCAAGTTGGAGAATCTAATGCTGGACAAAGATGGCCACATAAAAATTACAGATTTTGGACTTTGCAAAGAAGGGATCACAGATGCAGCCACCATGAAGACATTCTGTGGCACTCCAGAATATCTGGCACCAGAGGTGTTAGAAGATAATGACTATGGCCGAGCAGTAGACTGGTGGGGCCTAGGGGTTGTCATGTATGAAATGATGTGTGGGAGGTTACCTTTCTACAACCAGGACCATGAGAAACTTTTTGAATTAATATTAATGGAAGACATTAAATTTCCTCGAACACTCTCTTCAGATGCAAAATCATTGCTTTCAGGGCTCTTGATAAAGGATCCAAATAAACGCCTTGGTGGAGGACCAGATGATGCAAAAGAAATTATGAGACACAGTTTCTTCTCTGGAGTAAACTGGCAAGATGTATATGATAAAAAGCTTGTACCTCCTTTTAAACCTCAAGTAACATCTGAGACAGATACTAGATATTTTGATGAAGAATTTACAGCTCAGACTATTACAATAACACCACCTGAAAAATATGATGAGGATGGTATGGACTGCATGGACAATGAGAGGCGGCCGCATTTCCCTCAATTTTCCTACTCTGCAAGTGGACGAGAATAA MALHSMRKARERWSFIRALHKGSAAAPALQENI*KTGGQDTSF*RQMAHS*DIKRNLKMWIYLIPSTTFQWQNAS**KQNDQSQTHL*SDVSSGLLL*REHFM*ILQRKGKNGQKLSRL*QTDCRGKKRRE*IVVQLHKLII*ERKRWMPLQPIIKERQ*MILTI*NY*VKALLGKLFWFERRQVENTML*RF*RKKSLLQRMKWHTL*LKAEY*RTLDIPF*HP*NIPSRQKTVCVL*WNMLMGASCFSICRESGCSLRTAHVSMVQKLSLPWTIYIPERLCTVISSWRI*CWTKMAT*KLQILDFAKKGSQMQPP*RHSVALQNIWHQRC*KIMTMAEQ*TGGA*GLSCMK*CVGGYLSTTRTMRNFLN*Y*WKTLNFLEHSLQMQNHCFQGS**RIQINALVEDQMMQKKL*DTVSSLE*TGKMYMIKSLYLLLNLK*HLRQILDILMKNLQLRLLQ*HHLKNMMRMVWTAWTMRGGRISLNFPTLQVDEN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification 28670 PPP1R12B::SNX27 ENSG00000077157.23::ENSG00000143376.14 UACC812 SRR8615338 SRR8670724 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 276 FALSE NA FALSE NA PPP1R12B ENSG00000077157.23 protein_coding + + chr1:202348699-202592706:+ chr1:202349142:+ chr1:202317827-202561834:+ chr1:202318270:+ SNX27 ENSG00000143376.14 protein_coding + + chr1:151612006-151699091:+ chr1:151683356:+ chr1:151584482-151671567:+ chr1:151655832:+ chr1:202379474,chr1:202379473 chr1:151672705,chr1:151672701 NA NA chr1:202348602,chr1:202348601 chr1:151645181,chr1:151645177 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|62-99|7.7e-11^Ank_3|62-86|7.9e-05^MEDS|62-135|0.073^Ank_2|64-152|5.7e-26^Ank|64-88|4.7e-05^Ank_5|65-96|9.6e-08^Ank|90-122|1.7e-11^Ank_3|90-118|4.2e-09^Ank_5|91-129|3.2e-12^Ank_4|92-144|3.3e-20^Ank_3|123-150|2.7e-08^Ank|124-154|1.7e-11^Ank_5|126-164|1.6e-10^MEDS|166-232|0.00012^Ank_2|211-247|1.8e-08^Ank_5|211-255|1.2e-11^Ank|217-247|1.6e-09^Ank_3|217-244|8.9e-07^Ank_4|219-267|7.6e-15^Ank_2-PARTIAL|221-291~|1.2e-16^Ank|249-281|6.1e-08^Ank_3|249-277|6.1e-05^Ank_4|256-290|0.003^Ank_5|268-290|0.03^Ank-PARTIAL|283-291~|0.44^Ank_3|283-290|3 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:50.65Mb] 8 4 8 4 ONLY_REF_SPLICE YES_LDAS 0.145 GT 1.7465 AG 1.8892 ENST00000356764.6 1-291 ENST00000458013.7 1150-1626 chr1|+|[0]202348852-202349142[2]<==>chr1|+|[0]151683356-151683445[2]|[0]151692435-151692584[2]|[0]151692911-151693039[2]|[0]151693424-151693483[2]|[0]151694370-151694417[2] atggcggaactggagcacctaggagggaagcgggcagagtcggcgcgaatgcggcgggcagagcagcttcggcgctggcggggctcgctgacagagcaggagcctgcggagcgacgaggcgcggggcggcagccgctgaccaggcgcgggagccccagggtccgcttcgaggacggtgctgtctttctggccgcctgctctagcggggacaccgacgaggtgagaaagcttctggcaagaggtgctgatatcaacacggtcaacgtggacggcttgacagccctgcaccagGCAGTCGATGATGTGAAGAAAGGTTACATCAAAGCAGAAGAAAAGTCCTATCAATTACAGAAGCTATACGAACAAAGAAAAATGGTCATGTACCTCAACATGCTAAGGACTTGTGAGGGCTACAATGAAATCATCTTTCCCCACTGTGCCTGTGACTCCAGGAGGAAGGGGCACGTTATCACAGCCATCAGCATCACGCACTTTAAACTGCATGCCTGCACTGAAGAAGGACAGCTGGAGAACCAGGTAATTGCATTTGAATGGGATGAGATGCAGCGATGGGACACAGATGAAGAAGGGATGGCCTTCTGTTTCGAATATGCACGAGGAGAGAAGAAGCCCCGATGGGTTAAAATCTTCACGCCATATTTCAATTACATGCATGAGTGCTTCGAGAGGGTGTTCTGCGAGCTCAAGTGGAGAAAAGAGAACATTTTCCAGATGGCGAGGTCACAGCAGAGAGATGTGGCCACCTAG MAELEHLGGKRAESARMRRAEQLRRWRGSLTEQEPAERRGAGRQPLTRRGSPRVRFEDGAVFLAACSSGDTDEVRKLLARGADINTVNVDGLTALHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28673 CUL5::ENSG00000286046 ENSG00000166266.14::ENSG00000286046.1 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108033911:+ chr11:107879624-107978488:+ chr11:107904637:+ ENSG00000286046 ENSG00000286046.1 lncRNA + + chr4:18418662-18888662:+ chr4:18877617:+ chr4:18420285-18890285:+ chr4:18879240:+ chr11:108044501,chr11:108044500 chr4:18872244,chr4:18872240 NA NA chr11:107915228,chr11:107915227 chr4:18873867,chr4:18873863 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 43 22 43 22 ONLY_REF_SPLICE YES_LDAS 0.9198 GT 1.5546 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28677 TMTC2::ENSG00000257703 ENSG00000179104.9::ENSG00000257703.6 UACC257 SRR8615340 SRR8670719 SKIN malignant_melanoma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA TMTC2 ENSG00000179104.9 protein_coding + + chr12:82686880-83134870:+ chr12:82687669:+ chr12:83080659-83528649:+ chr12:83081448:+ ENSG00000257703 ENSG00000257703.6 lncRNA - - chr12:103079634-103178675:- chr12:103081537:- chr12:103473412-103572453:- chr12:103475315:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 3 11 3 ONLY_REF_SPLICE YES_LDAS 0.1982 GT 1.9899 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28684 EFTUD2::PLCD3 ENSG00000108883.13::ENSG00000161714.12 NCIH1048 SRR8615341 SRR8652136 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 279 FALSE NA FALSE NA EFTUD2 ENSG00000108883.13 protein_coding - - chr17:44849948-44899445:- chr17:44863655:- chr17:42927316-42976813:- chr17:42941023:- PLCD3 ENSG00000161714.12 protein_coding - - chr17:45108959-45133354:- chr17:45119043:- chr17:43186327-43210721:- chr17:43196410:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EFTUD2|4-110|6.4e-42^GTP_EFTU|129-357|1.1e-44^GTP_EFTU_D2|491-566|1.4e-15^EFG_III|586-648|3e-11^EFG_IV|707-823|1.6e-23^EFG_C|826-914|6.1e-26 C2-PARTIAL|~685-765|3.1e-20 ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.21Mb] 18 9 18 9 ONLY_REF_SPLICE YES_LDAS 0.3042 GT 1.9899 AG 1.9656 ENST00000591382.5 1-1413 ENST00000619929.5 685-2370 chr17|-|[2]44863655-44863782[1]|[0]44864930-44865065[0]|[2]44867807-44867897[2]|[1]44868287-44868350[1]|[0]44872446-44872570[2]|[1]44875934-44876100[0]|[2]44879556-44879638[1]|[0]44880554-44880644[0]|[2]44881687-44881722[0]|[2]44883093-44883158[0]|[2]44883649-44883724[2]|[1]44885256-44885334[1]|[0]44886585-44886750[0]|[2]44894417-44894521[0]<==>chr17|-|[2]45112616-45112704[1]|[0]45112863-45113012[1]|[0]45113122-45113257[0]|[2]45113439-45113605[1]|[0]45114250-45114366[1]|[0]45115094-45115244[0]|[2]45115344-45115490[0]|[2]45116632-45116784[0]|[2]45117994-45118138[2]|[1]45118291-45118492[1]|[0]45118815-45119043[0] atggataccgacttatatgatgagtttgggaattatattggaccagagcttgattctgatgaagatgatgatgaattgggtagagagaccaaagatcttgatgagatggatgatgatgacgacgacgatgacgtaggagatcatgacgatgaccaccctgggatggaggtggtgctgcatgaggacaagaagtactacccaacagccgaggaggtgtatggtcctgaggtggagaccatagttcaagaggaagacactcagcctctcacagaacccattattaagccagtgaaaaccaagaaattcactctgatggagcagacattacctgttacggtgtatgagatggatttcttggcggatctgatggataactcagagctcatcagaaatgtgaccctttgtggacatctccaccatggcaagacatgttttgtggattgtttaattgaacagactcacccggaaatcagaaagcgctatgaccaagatctgtgctatactgacatcctcttcacagagcaagagagaggtgtaggcatcaaaagcactcctgtgacagtggtcttgccagacaccaaaggaaaatcttatctcttcaatatcatggacactccaggacatgtgaatttctctgatgaggtcacagctggcttgcgcatctcagatggagtggtccttttcattgatgctgctgagggggtgatgctgaacacagagcggctgatcaagcatgcggtgcaggagaggctggcagtcactgtgtgcatcaacaagattgaccggctgatcctggagctgaagctgcctccaactgatgcttattacaagctgcgccacattgtggatgaggtcaatggattaataagcatgtattccactgatgagaacctgatcctttccccactcctgggtaacgtctgcttctccagctcccagtacagcatctgcttcacgctgggctcctttgccaagatctatgccgacacctttggtgacattaattaccaagaatttgctaaaagactctggggtgacatctacttcaaccctaagacgcgaaagttcaccaaaaaggccccaactagcagctcccagagaagtttcgtggagtttatcttggagcctctttataagatcctcgcccaggttgtaggtgacgtggacaccagcctcccacggaccctagacgagcttggcatccacctgacgaaggaggagctgaagctgaacatccgccccttgctcaggctggtctgcaaaaagttctttggcgagttcacaggctttgtggacatgtgtgtgcagcatatcccttctccaaaggtgggcgccaagcccaagattgagcacacctacaccggtggtgtggactccgacctcggcgaggctatgagtgactgtgaccctgatGAGTGTGACCACTCCAACAACGACCGTCTAGAGGGGGCTGAGATCGAGGAGTTCCTGCGGCGGCTGCTGAAGCGGCCGGAGCTGGAGGAGATCTTCCATCAGTACTCGGGCGAGGACCGCGTGCTGAGTGCCCCTGAGCTGCTGGAGTTCCTGGAGGACCAGGGCGAGGAGGGCGCCACACTGGCCCGCGCCCAGCAGCTCATTCAGACCTATGAGCTCAACGAGACAGCCAAGCAGCATGAGCTGATGACACTGGATGGCTTCATGATGTACCTGTTGTCGCCGGAGGGGGCTGCCTTGGACAACACCCACACGTGTGTGTTCCAGGACATGAACCAGCCCCTTGCCCACTACTTCATCTCTTCCTCCCACAACACCTATCTGACTGACTCCCAGATCGGGGGGCCCAGCAGCACCGAGGCCTATGTTAGGGCCTTTGCCCAGGGATGCCGCTGCGTGGAGCTGGACTGCTGGGAGGGGCCAGGAGGGGAGCCCGTCATCTATCATGGCCATACCCTCACCTCCAAGATTCTCTTCCGGGACGTGGTCCAAGCCGTGCGCGACCATGCCTTCACGCTGTCCCCTTACCCTGTCATCCTATCCCTGGAGAACCACTGCGGGCTGGAGCAGCAGGCTGCCATGGCCCGCCACCTCTGCACCATCCTGGGGGACATGCTGGTGACACAGGCGCTGGACTCCCCAAATCCCGAGGAGCTGCCATCCCCAGAGCAGCTGAAGGGCCGGGTCCTGGTGAAGGGAAAGAAGTTGCCCGCTGCTCGGAGCGAGGATGGCCGGGCTCTGTCGGATCGGGAGGAGGAGGAGGAGGATGACGAGGAGGAAGAAGAGGAGGTGGAGGCTGCAGCGCAGAGGCGGCTGGCCAAGCAGATCTCCCCGGAGCTGTCGGCCCTGGCTGTGTACTGCCACGCCACCCGCCTGCGGACCCTGCACCCTGCCCCCAACGCCCCACAACCCTGCCAGGTCAGCTCCCTCAGCGAGCGCAAAGCCAAGAAACTCATTCGGGAGGCAGGGAACAGCTTTGTCAGGCACAATGCCCGCCAGCTGACCCGCGTGTACCCGCTGGGGCTGCGGATGAACTCAGCCAACTACAGTCCCCAGGAGATGTGGAACTCGGGCTGTCAGCTGGTGGCCTTGAACTTCCAGACGCCAGGCTACGAGATGGACCTCAATGCCGGGCGCTTCCTAGTCAATGGGCAGTGTGGCTACGTCCTAAAACCTGCCTGCCTGCGGCAACCTGACTCGACCTTTGACCCCGAGTACCCAGGACCTCCCAGAACCACTCTCAGCATCCAGGTGCTGACTGCACAGCAGCTGCCCAAGCTGAATGCCGAGAAGCCACACTCCATTGTGGACCCCCTGGTGCGCATTGAGATCCATGGGGTGCCCGCAGACTGTGCCCGGCAGGAGACTGACTACGTGCTCAACAATGGCTTCAACCCCCGCTGGGGGCAGACCCTGCAGTTCCAGCTGCGGGCTCCGGAGCTGGCACTGGTCCGGTTTGTGGTGGAAGATTATGACGCCACCTCCCCCAATGACTTTGTGGGCCAGTTTACACTGCCTCTTAGCAGCCTAAAGCAAGGGTACCGCCACATACACCTGCTTTCCAAGGACGGGGCCTCACTGTCACCAGCCACGCTCTTCATCCAAATCCGCATCCAGCGCTCCTGA MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDDDDDDVGDHDDDHPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDECDHSNNDRLEGAEIEEFLRRLLKRPELEEIFHQYSGEDRVLSAPELLEFLEDQGEEGATLARAQQLIQTYELNETAKQHELMTLDGFMMYLLSPEGAALDNTHTCVFQDMNQPLAHYFISSSHNTYLTDSQIGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLTSKILFRDVVQAVRDHAFTLSPYPVILSLENHCGLEQQAAMARHLCTILGDMLVTQALDSPNPEELPSPEQLKGRVLVKGKKLPAARSEDGRALSDREEEEEDDEEEEEEVEAAAQRRLAKQISPELSALAVYCHATRLRTLHPAPNAPQPCQVSSLSERKAKKLIREAGNSFVRHNARQLTRVYPLGLRMNSANYSPQEMWNSGCQLVALNFQTPGYEMDLNAGRFLVNGQCGYVLKPACLRQPDSTFDPEYPGPPRTTLSIQVLTAQQLPKLNAEKPHSIVDPLVRIEIHGVPADCARQETDYVLNNGFNPRWGQTLQFQLRAPELALVRFVVEDYDATSPNDFVGQFTLPLSSLKQGYRHIHLLSKDGASLSPATLFIQIRIQRS* FALSE FALSE NA NA TRUE hsa-mir-6784 chr17:45114367-45114433:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28688 TMEM181::SYTL3 ENSG00000146433.10::ENSG00000164674.17 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 280 FALSE NA FALSE NA TMEM181 ENSG00000146433.10 protein_coding + + chr6:158536436-158635429:+ chr6:158573523:+ chr6:158957468-159056461:+ chr6:158994555:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158745480:+ chr6:159071046-159185908:+ chr6:159166512:+ chr6:158580598,chr6:158580599 chr6:158730795,chr6:158730793 NA NA chr6:159001630,chr6:159001631 chr6:159151827,chr6:159151825 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MIG-14_Wnt-bd|47-82|0.0038^MIG-14_Wnt-bd-PARTIAL|169-235~|8.6e-101 none ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.01Mb];NEIGHBORS[14586] 57 40 57 40 ONLY_REF_SPLICE YES_LDAS 1.5135 GT 1.8892 AG 1.8256 ENST00000367090.4 1-235 ENST00000611299.5 856-1833 chr6|+|[0]158536735-158536865[1]|[2]158573420-158573523[0]<==>chr6|+|[0]158745480-158745658[1]|[2]158751928-158752030[2]|[0]158757211-158757381[2]|[0]158760640-158760745[0]|[1]158762076-158762178[1]|[2]158763304-158763509[0]|[1]158764495-158764604[2] atggacgccgagtaccctgcctttgagcccccgctctgcagcgagctcaagcacctgtgccggcggctgcgggaagcgtaccgcgagctcaaggaggacctcacgcccttcaaggatgaccgctactacaggctggcgcccatgcggctctacacgctctccaagcgccactttgtcctcgtgtttgtcgtcttcttcatctgctttggcctgaccatcttcgttgggatcagagGGAAGTTTAATTAGCATTGACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCCATTCATTATTGCTTCAAAACCCATTCTTTAGAAATATGCATCAAGGCCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAGAAAAAGTGCAATCCGTATGTGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAACACCGTGGACCCGACCTTTCAGGAGACCTTGAAGTATCAGGTGGCCCCTGCCCAGCTGGTGACCCGGCAGCTGCAGGTCTCGGTGTGGCATCTGGGCACGCTGGCCCGGAGAGTGTTTCTTGGAGAAGTGATCATTCCTCTGGCCACGTGGGACTTTGAAGACAGCACAACACAGTCCTTCCGCTGGCATCCGCTCCGGGCCAAGGCGGAGAAATACGAAGACAGCGTTCCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAGAGGCTCAAGAAGGGACAGATCAGCCATCACTTCATGGTCAACTTTGTTTGGTAGTGCTAGGAGCCAAGAATTTACCTGTGCGGCCAGATGGCACCTTGAACTCATTTGTTAAGGGCTGTCTCACTCTGCCAGACCAACAAAAACTGAGACTGAAGTCGCCAGTCCTGAGGAAGCAGGCTTGCCCCCAGTGGAAACACTCATTTGTCTTCAGTGGCGTAACCCCAGCTCAGCTGAGGCAGTCAAGCTTGGAGTTAACTGTCTGGGATCAGGCCCTCTTTGGAATGAACGACCGCTTGCTTGGAGGAACCAGACTTGGTTCAAAGGGAGACACAGCTGTTGGCGGGGATGCATGCTCACTATCGAAGCTCCAGTGGCAGAAAGTCCTTTCCAGCCCCAATCTATGGACAGACATGACTCTTGTCCTGCACTGA MDAEYPAFEPPLCSELKHLCRRLREAYRELKEDLTPFKDDRYYRLAPMRLYTLSKRHFVLVFVVFFICFGLTIFVGIRGKFN*H*QHLYRDGQF*QC*CHWRNRICHSLLLQNPFFRNMHQGL*EPCLWRRKEEKVQSVCEDLPVARQILPGKAQDWSPKEHRGPDLSGDLEVSGGPCPAGDPAAAGLGVASGHAGPESVSWRSDHSSGHVGL*RQHNTVLPLASAPGQGGEIRRQRSSE*WRAHSPG*AGSPFTAQKTPRGSRRDRSAITSWSTLFGSARSQEFTCAARWHLELIC*GLSHSARPTKTETEVASPEEAGLPPVETLICLQWRNPSSAEAVKLGVNCLGSGPLWNERPLAWRNQTWFKGRHSCWRGCMLTIEAPVAESPFQPQSMDRHDSCPAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28690 KIF20B::GBE1 ENSG00000138182.15::ENSG00000114480.13 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE FALSE TRUE 281 FALSE NA FALSE NA KIF20B ENSG00000138182.15 protein_coding + + chr10:89701590-89774939:+ chr10:89754673:+ chr10:91461347-91534696:+ chr10:91514430:+ GBE1 ENSG00000114480.13 protein_coding - - chr3:81489703-81761645:- chr3:81649921:- chr3:81538854-81810796:- chr3:81699072:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Kinesin|64-479|1.1e-92^Microtub_bd|65-186|2.3e-16^TPR_11|248-259|0.037^Microtub_bd|261-286|0.017^Kinesin|755-798|1.1^Microtub_bd|848-935|0.76^Kinesin|933-978|1.2^Microtub_bd|1084-1123|0.54^Microtub_bd|1336-1366|0.83^TPR_11|1351-1365|0.0002^Kinesin|1355-1432|0.21 Alpha-amylase-PARTIAL|~307-321|0.013^Alpha-amylase_C|562-655|4.4e-27 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr3] 28 16 28 16 ONLY_REF_SPLICE YES_LDAS 0.6866 GT 1.7232 AG 1.7465 ENST00000371728.8 1-4503 ENST00000489715.1 307-1986 chr10|+|[0]89705295-89705441[2]|[0]89709167-89709253[2]|[0]89709345-89709461[2]|[0]89709927-89710065[0]|[1]89710961-89711145[2]|[0]89714047-89714083[0]|[1]89714955-89715182[0]|[1]89716436-89716547[1]|[2]89717424-89717495[1]|[2]89717576-89717722[1]|[2]89718710-89718872[2]|[0]89719419-89719706[2]|[0]89723964-89724103[1]|[2]89725020-89725158[2]|[0]89726293-89726521[0]|[1]89727856-89727896[2]|[0]89729128-89729247[2]|[0]89732903-89733056[0]|[1]89737387-89738617[1]|[2]89738958-89739096[2]|[0]89743808-89743927[2]|[0]89745899-89745959[0]|[1]89751346-89751471[0]|[1]89752567-89752691[2]|[0]89754518-89754673[2]<==>chr3|-|[2]81490407-81490463[0]|[2]81499110-81499227[2]|[1]81535195-81535325[0]|[2]81536911-81537095[1]|[0]81577925-81578096[0]|[2]81581165-81581275[0]|[2]81586092-81586190[0]|[2]81591037-81591164[1]|[0]81593908-81594023[2]|[1]81642781-81642990[2]|[1]81646392-81646482[1]|[0]81648856-81648991[0]|[2]81649796-81649921[0] atggaatctaattttaatcaagagggagtacctcgaccatcttatgtttttagtgctgacccaattgcaaggccttcagaaataaatttcgatggcattaagcttgatctgtctcatgaattttccttagttgctccaaatactgaggcaaacagtttcgaatctaaagattatctccaggtttgtcttcgaataagaccatttacacagtcagaaaaagaacttgagtctgagggctgtgtgcatattctggattcacagactgttgtgctgaaagagcctcaatgcatccttggtcggttaagtgaaaaaagctcagggcagatggcacagaaattcagtttttccaaggtttttggcccagcaactacacagaaggaattctttcagggttgcattatgcaaccagtaaaagacctcttgaaaggacagagtcgtctgatttttacttacgggctaaccaattcaggaaaaacatatacatttcaagggacagaagaaaatattggcattctgcctcgaactttgaatgtattatttgatagtcttcaagaaagactgtatacaaagatgaaccttaaaccacatagatccagagaatacttaaggttatcatcagaacaagagaaagaagaaattgctagcaaaagtgcattgcttcggcaaattaaagaggttactgtgcataatgatagtgatgatactctttatggaagtttaactaactctttgaatatctcagagtttgaagaatccataaaagattatgaacaagccaacttgaatatggctaatagtataaaattttctgtgtgggtttctttctttgaaatttacaatgaatatatttatgacttatttgttcctgtatcatctaaattccaaaagagaaagatgctgcgcctttcccaagacgtaaagggctattcttttataaaagatctacaatggattcaagtatctgattccaaagaagcctatagacttttaaaactaggaataaagcaccagagtgttgccttcacaaaattgaataatgcttccagtagaagtcacagcatattcactgttaaaatattacagattgaagattctgaaatgtctcgtgtaattcgagtcagtgaattatctttatgtgatcttgctggttcagaacgaactatgaagacacagaatgaaggtgaaaggttaagagagactgggaatatcaacacttctttattgactctgggaaagtgtattaacgtcttgaagaatagtgaaaagtcaaagtttcaacagcatgtgcctttccgggaaagtaaactgactcactattttcaaagtttttttaatggtaaagggaaaatttgtatgattgtcaatatcagccaatgttatttagcctatgatgaaacactcaatgtattgaagttctccgccattgcacaaaaagtttgtgtcccagacactttaaattcctctcaagagaaattatttggacctgtcaaatcttctcaagatgtatcactagacagtaattcaaacagtaaaatattaaatgtaaaaagagccaccatttcatgggaaaatagtctagaagatttgatggaagacgaggatttggttgaggagctagaaaacgctgaagaaactcaaaatgtggaaactaaacttcttgatgaagatctagataaaacattagaggaaaataaggctttcattagccacgaggagaaaagaaaactgttggacttaatagaagacttgaaaaaaaaactgataaatgaaaaaaaggaaaaattaaccttggaatttaaaattcgagaagaagttacacaggagtttactcagtattgggctcaacgggaagctgactttaaggagactctgcttcaagaacgagagatattagaagaaaatgctgaacgtcgtttggctatcttcaaggatttggttggtaaatgtgacactcgagaagaagcagcgaaagacatttgtgccacaaaagttgaaactgaagaaacacataattatgtaggatttgaagatattattgattctcttcaagataatgttgctgatattaagaaacaggctgaaattgctcacttatatattgcatctcttcctgacccccaggaagctactgcttgtttagaactaaagtttaatcaaattaaagctgaattagctaaaaccaaaggagaattaatcaaaaccaaagaagagttaaaaaagagagaaaatgaatcagattcattgattcaagagcttgagacatctaataagaaaataattacacagaatcaaagaattaaagaattgataaatataattgatcaaaaagaagatactatcaacgaatttcagaacctaaagtctcatatggaaaacacatttaaatgcaatgacaaggctgatacatcttctttaataataaacaataaattgatttgtaatgaaacagttgaagtacctaaggacagcaaatctaaaatctgttcagaaagaaaaagagtaaatgaaaatgaacttcagcaagatgaaccaccagcaaagaaagggtctatccatgttagttcagctatcactgaagaccaaaagaaaagtgaagaagtgcgaccgaacattgcagaaattgaagacatcagagttttacaagaaaataatgaaggactgagagcatttttactcactattgagaatgaacttaaaaatgaaaaggaagaaaaagcagaattaaataaacagattgttcattttcagcaggaactttctctttctgaaaaaaagaatttaactttaagtaaagaggtccaacaaattcagtcaaattatgatattgcaattgctgaattacatgtgcagaaaagtaaaaatcaagaacaggaggaaaagatcatgaaattgtcaaatgagatagaaactgctacaagaagcattacaaataatgtttcacaaataaaattaatgcacacgaaaatagacgaactacgtactcttgattcagtttctcagatttcaaacatagatttgctcaatctcagggatctgtcaaatggttctgaggaggataatttgccaaatacacagttagaccttttaggtaatgattatttggtaagtaagcaagttaaagaatatcgaattcaagaacccaatagggaaaattctttccactctagtattgaagctatttgggaagaatgtaaagagattgtgaaggcctcttccaaaaaaagtcatcagattgaggaactggaacaacaaattgaaaaattgcaggcagaagtaaaaggctataaggatgaaaacaatagactaaaggagaaggagcataaaaaccaagatgacctactaaaagaaaaagaaactcttatacagcagctgaaagaagaattgcaagaaaaaaatgttactcttgatgttcaaatacagcatgtagttgaaggaaagagagcgctttcagaacttacacaaggtgttacttgctataaggcaaaaataaaggaacttgaaacaattttagagactcagaaagttgaatgtagtcattcagccaagttagaacaagacattttggaaaaggaatctatcatcttaaagctagaaagaaatttgaaggaatttcaagaacatcttcaggattctgtcaaaaacaccaaagatttaaatgtaaaggaactcaagctgaaagaagaaatcacacagttaacaaataatttgcaagatatgaaacatttacttcaattaaaagaagaagaagaagaaaccaacaggcaagaaacagaaaaattgaaagaggaactctctgcaagctctgctcgtacccagaatctgaaagcagatcttcagaggaaggaagaagattatgctgacctgaaagagaaactgactgatgccaaaaagcagattaagcaagtacagaaagaggtatctgtaatgcgtgatgaggataaattactgaggattaaaattaatgaactggagaaaaagaaaaaccagtgttctcaggaattagatatgaaacagcgaaccattcagcaactcaaggagcagttaaataatcagaaagtggaagaagctatacaacagtatgagagagcatgcaaagatctaaatgttaaagagaaaataattgaagacatgcgaatgacactagaagaacaggaacaaactcaggtagaacaggatcaagtgcttgaggctaaattagaggaagttgaaaggctggccacagaattggaaaaatggaaggaaaaatgcaatgatttggaaaccaaaaacaatcaaaggtcaaataaagaacatgagaacaacacagatgtgcttggaaagctcactaatcttcaagatgagttacaggagtctgaacagaaatataatgctgatagaaagaaatggttagaagaaaaaatgatgcttatcactcaagcgaaagaagcagagaatatacgaaataaagagatgaaaaaatatgctgaggacagggagcgtttttttaagcaacagaatgaaatgGTAGTTATTACTAGTAAAAGCGGAGAGATCTTGTATCGTATTTCACCGTGGGCAAAGTATGTGGTTCGTGAAGGTGATAATGTGAATTATGATTGGATACACTGGGATCCAGAACACTCATATGAGTTTAAGCATTCCAGACCAAAGAAGCCACGGAGTCTAAGAATTTATGAATCTCATGTGGGAATTTCTTCCCATGAAGGAAAAGTAGCTTCTTATAAACATTTTACATGCAATGTACTACCAAGAATCAAAGGCCTTGGATACAACTGCATTCAGTTGATGGCAATCATGGAGCATGCTTACTATGCCAGCTTTGGTTACCAAATCACAAGCTTCTTTGCAGCTTCCAGCCGTTATGGAACACCTGAAGAGCTACAAGAACTGGTAGACACAGCTCATTCCATGGGTATCATAGTCCTCTTAGATGTGGTACACAGCCATGCTTCAAAAAATTCAGCAGATGGATTGAATATGTTTGATGGGACAGATTCCTGTTATTTTCATTCTGGACCTAGAGGGACTCATGATCTTTGGGATAGCAGATTGTTTGCCTACTCCAGCTGGGAAATTTTAAGATTCCTTCTGTCAAACATAAGATGGTGGTTGGAAGAATATCGCTTTGATGGATTTCGTTTTGATGGTGTTACGTCCATGCTTTATCATCACCATGGAGTGGGTCAAGGTTTCTCAGGTGATTACAGTGAATATTTCGGACTACAAGTAGATGAAGATGCCTTGACTTACCTCATGTTGGCAAATCATTTGGTTCACACGCTGTGTCCCGATTCTATAACAATAGCTGAGGATGTATCAGGAATGCCAGCTCTGTGCTCTCCAATTTCCCAGGGAGGGGGTGGTTTTGACTATCGACTAGCCATGGCAATTCCAGATAAGTGGATTCAGCTACTTAAAGAGTTTAAAGATGAAGACTGGAACATGGGCGATATAGTATACACGCTCACAAACAGGCGCTACCTTGAAAAGTGCATTGCTTATGCAGAGAGCCATGATCAGGCATTGGTTGGGGATAAGTCGCTGGCATTTTGGTTGATGGATGCCGAAATGTATACAAACATGAGTGTCCTGACTCCTTTTACTCCAGTTATTGATCGTGGAATACAGCTTCATAAAATGATTCGACTCATTACGCATGGGCTTGGTGGAGAAGGCTATCTCAATTTCATGGGTAATGAATTTGGGCATCCTGAATGGTTAGACTTCCCAAGAAAAGGAAATAATGAGAGTTACCATTATGCCAGGCGGCAGTTTCATTTAACTGACGACGACCTTCTTCGCTACAAGTTCCTAAATAATTTTGACAGGGATATGAATAGATTGGAAGAAAGATATGGTTGGCTTGCAGCTCCACAGGCCTACGTGAGTGAAAAACATGAAGGCAATAAGATCATTGCTTTTGAAAGAGCAGGTCTTCTTTTCATTTTCAACTTCCATCCAAGCAAGAGCTACACTGACTACCGAGTTGGAACAGCATTGCCAGGGAAATTCAAAATTGTGCTAGATTCAGATGCAGCGGAATATGGAGGGCATCAGAGACTGGACCACAGCACTGACTTTTTTTCTGAGGCTTTTGAACATAATGGGCGTCCCTATTCTCTTTTGGTGTACATTCCAAGCAGAGTGGCCCTCATCCTTCAGAATGTGGATCTGCCGAATTGA MESNFNQEGVPRPSYVFSADPIARPSEINFDGIKLDLSHEFSLVAPNTEANSFESKDYLQVCLRIRPFTQSEKELESEGCVHILDSQTVVLKEPQCILGRLSEKSSGQMAQKFSFSKVFGPATTQKEFFQGCIMQPVKDLLKGQSRLIFTYGLTNSGKTYTFQGTEENIGILPRTLNVLFDSLQERLYTKMNLKPHRSREYLRLSSEQEKEEIASKSALLRQIKEVTVHNDSDDTLYGSLTNSLNISEFEESIKDYEQANLNMANSIKFSVWVSFFEIYNEYIYDLFVPVSSKFQKRKMLRLSQDVKGYSFIKDLQWIQVSDSKEAYRLLKLGIKHQSVAFTKLNNASSRSHSIFTVKILQIEDSEMSRVIRVSELSLCDLAGSERTMKTQNEGERLRETGNINTSLLTLGKCINVLKNSEKSKFQQHVPFRESKLTHYFQSFFNGKGKICMIVNISQCYLAYDETLNVLKFSAIAQKVCVPDTLNSSQEKLFGPVKSSQDVSLDSNSNSKILNVKRATISWENSLEDLMEDEDLVEELENAEETQNVETKLLDEDLDKTLEENKAFISHEEKRKLLDLIEDLKKKLINEKKEKLTLEFKIREEVTQEFTQYWAQREADFKETLLQEREILEENAERRLAIFKDLVGKCDTREEAAKDICATKVETEETHNYVGFEDIIDSLQDNVADIKKQAEIAHLYIASLPDPQEATACLELKFNQIKAELAKTKGELIKTKEELKKRENESDSLIQELETSNKKIITQNQRIKELINIIDQKEDTINEFQNLKSHMENTFKCNDKADTSSLIINNKLICNETVEVPKDSKSKICSERKRVNENELQQDEPPAKKGSIHVSSAITEDQKKSEEVRPNIAEIEDIRVLQENNEGLRAFLLTIENELKNEKEEKAELNKQIVHFQQELSLSEKKNLTLSKEVQQIQSNYDIAIAELHVQKSKNQEQEEKIMKLSNEIETATRSITNNVSQIKLMHTKIDELRTLDSVSQISNIDLLNLRDLSNGSEEDNLPNTQLDLLGNDYLVSKQVKEYRIQEPNRENSFHSSIEAIWEECKEIVKASSKKSHQIEELEQQIEKLQAEVKGYKDENNRLKEKEHKNQDDLLKEKETLIQQLKEELQEKNVTLDVQIQHVVEGKRALSELTQGVTCYKAKIKELETILETQKVECSHSAKLEQDILEKESIILKLERNLKEFQEHLQDSVKNTKDLNVKELKLKEEITQLTNNLQDMKHLLQLKEEEEETNRQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQIKQVQKEVSVMRDEDKLLRIKINELEKKKNQCSQELDMKQRTIQQLKEQLNNQKVEEAIQQYERACKDLNVKEKIIEDMRMTLEEQEQTQVEQDQVLEAKLEEVERLATELEKWKEKCNDLETKNNQRSNKEHENNTDVLGKLTNLQDELQESEQKYNADRKKWLEEKMMLITQAKEAENIRNKEMKKYAEDRERFFKQQNEMVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDPEHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAIMEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28692 ACOXL::BCL2L11 ENSG00000153093.21::ENSG00000153094.25 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 283 FALSE NA FALSE NA ACOXL ENSG00000153093.21 protein_coding + + chr2:110732539-111118548:+ chr2:110841405:+ chr2:111490116-111876125:+ chr2:111598982:+ BCL2L11 ENSG00000153094.25 protein_coding + + chr2:111119378-111168444:+ chr2:111150044:+ chr2:111876955-111926021:+ chr2:111907621:+ chr2:110844773,chr2:110844772 chr2:111132904,chr2:111132900 NA NA chr2:111602350,chr2:111602349 chr2:111890481,chr2:111890477 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Acyl-CoA_dh_M|90-197|1.3e-14^Acyl-CoA_dh_1|228-359|7.5e-10^ACOX|280-320|0.14^ACOX|405-545|6e-21^Integrase_Zn|442-470|8.8e-05 none ["BCL2L11:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.00Mb];NEIGHBORS[1156] 20 12 20 10 ONLY_REF_SPLICE YES_LDAS 0.4681 GT 1.9656 AG 1.9656 ENST00000439055.6 1-788 ENST00000393252.4 677-879 chr2|+|[0]110768390-110768464[2]|[0]110784732-110784815[2]|[0]110793650-110793736[2]|[0]110794076-110794174[2]|[0]110798610-110798724[0]|[1]110799014-110799100[0]|[1]110801652-110801724[1]|[2]110805263-110805395[2]|[0]110841371-110841405[1]<==>chr2|+|[1]111150044-111150147[2]|[0]111164133-111164231[2] atgagagctttgacagttcagagagtgaagtttgccatggacctgcctctgttaaaacgtgcaggtcaggatctggcagagaaaacaaagaattttgtcagccgaagccttgtcataggagaagtcctctccatggcggacatggccacaggagtgaagtgcggaataatttattggctatttggtggtgctatcaggaatctcggaagccctgaacatgttactaagtggtttcagccactccaggagcagaaatacactgggatgtttgcaatgaccgagaggggccatgggagcaacgcgagagggatccagaccgaagccacctttgacctctctgcccaggagtttgtaattgacacgccgtgtgaaaatgcggagaagatgtatattggaaatgccatgtacgggaattatgcagctgtctttgcccagctcatcatagatggaagatctcaagggccccactgtttcatcgttcctgtccgggatgaaaacggaagcttgtacccaggagtcacagctattgatatgatgtacaaggagggtctgcatggtgtggacaatgggatattaatatttgacaaggttcggatacccagggagaacctgctggataagtttggttccgtggctccagatggacagtaccattcgcctattaggaacaagagtgcaagattcaatgccatgctggcagcactgaccccttcgagattagctgtggctttccaagctatgggtgccatgaagcttgggttgacgatagccattcgctatagccacagCTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACGAGTTTAACGCTTACTATGCAAGGAGGGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACATTGTCCGCCTGGTGTGGAGAATGCATTGA MRALTVQRVKFAMDLPLLKRAGQDLAEKTKNFVSRSLVIGEVLSMADMATGVKCGIIYWLFGGAIRNLGSPEHVTKWFQPLQEQKYTGMFAMTERGHGSNARGIQTEATFDLSAQEFVIDTPCENAEKMYIGNAMYGNYAAVFAQLIIDGRSQGPHCFIVPVRDENGSLYPGVTAIDMMYKEGLHGVDNGILIFDKVRIPRENLLDKFGSVAPDGQYHSPIRNKSARFNAMLAALTPSRLAVAFQAMGAMKLGLTIAIRYSHSFHEAG*TCRYAPRDMDRPRVAAYWRRV*RLLCKEGIFE*LPSSRRPPTNGYLTTVTLHCPPGVENAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28693 GBE1::KIF20B ENSG00000114480.13::ENSG00000138182.15 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 282 FALSE NA FALSE NA GBE1 ENSG00000114480.13 protein_coding - - chr3:81489703-81761645:- chr3:81670838:- chr3:81538854-81810796:- chr3:81719989:- KIF20B ENSG00000138182.15 protein_coding + + chr10:89701590-89774939:+ chr10:89758706:+ chr10:91461347-91534696:+ chr10:91518463:+ chr3:81665267,chr3:81665272 chr10:89754832,chr10:89754827 NA NA chr3:81714418,chr3:81714423 chr10:91514589,chr10:91514584 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame hDGE_amylase|21-60|0.22^CBM_48|76-161|1.3e-21^hDGE_amylase|153-180|1^Alpha-amylase|159-222|0.14^hDGE_amylase|223-297|2.1e-05^Alpha-amylase|224-333|4.4e-16^Alpha-amylase|339-362|0.01 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr10] 14 6 14 6 ONLY_REF_SPLICE YES_LDAS 0.3121 GT 1.8295 AG 1.8892 ENST00000429644.7 1-429 ENST00000260753.8 4384-5343 chr3|-|[2]81670838-81670953[1]|[0]81705444-81705613[2]|[1]81761375-81761517[0]<==>chr10|+|[0]89758706-89758882[2]|[0]89760526-89760636[2]|[0]89762638-89762835[2]|[0]89768290-89768391[2]|[0]89768738-89768888[0]|[1]89772689-89772831[2]|[0]89773971-89774048[2] atggcggctccgatgactcccgcggctcggcccgaggactacgaggcggcgctcaatgccgccctggctgacgtgcccgaactggccagactcctggagatcgacccgtacttgaagccctacgccgtggacttccagcgcaggtataagcagtttagccaaattttgaagaacattggagaaaatgaaggtggtattgataagttttccagaggctatgaatcatttggcgtccacagatgtgctgatggtggtttatactgcaaagaatgggccccgggagcagaaggagtttttcttactggagattttaatggttggaatccattttcgtacccatacaaaaaactggattatggaaaatgggagctgtatatcccaccaaagcagaataaatctgtactcgtgcctcatggatccaaattaaagGAAATACTGACAGCCCAGCTGACAGAGAAAGATAGTGACCTTCAAAAGTGGCGAGAAGAACGAGATCAACTGGTTGCAGCTTTAGAAATACAGCTAAAAGCACTGATATCCAGTAATGTACAGAAAGATAATGAAATTGAACAACTAAAAAGGATCATATCAGAGACTTCTAAAATAGAAACACAAATCATGGATATCAAGCCCAAACGTATTAGTTCAGCAGATCCTGACAAACTTCAAACTGAACCTCTATCGACAAGTTTTGAAATTTCCAGAAATAAAATAGAGGATGGATCTGTAGTCCTTGACTCTTGTGAAGTGTCAACAGAAAATGATCAAAGCACTCGATTTCCAAAACCTGAGTTAGAGATTCAATTTACACCTTTACAGCCAAACAAAATGGCAGTGAAACACCCTGGTTGTACCACACCAGTGACAGTTAAGATTCCCAAGGCTCGGAAGAGGAAGAGTAATGAAATGGAGGAGGACTTGGTGAAATGTGAAAATAAGAAGAATGCTACACCCAGAACTAATTTGAAATTTCCTATTTCAGATGATAGAAATTCTTCTGTCAAAAAGGAACAAAAGGTTGCCATACGTCCATCATCTAAGAAAACATATTCTTTACGGAGTCAGGCATCCATAATTGGTGTAAACCTGGCCACTAAGAAAAAAGAAGGAACACTACAGAAATTTGGAGACTTCTTACAACATTCTCCCTCAATTCTTCAATCAAAAGCAAAGAAGATAATTGAAACAATGAGCTCTTCAAAGCTCTCAAATGTAGAAGCAAGTAAAGAAAATGTGTCTCAACCAAAACGAGCCAAACGGAAATTATACACAAGTGAAATTTCATCTCCTATTGATATATCAGGCCAAGTGATTTTAATGGACCAGAAAATGAAGGAGAGTGATCACCAGATTATCAAACGACGACTTCGAACAAAAACAGCCAAATAA MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIGENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYGKWELYIPPKQNKSVLVPHGSKLKEILTAQLTEKDSDLQKWREERDQLVAALEIQLKALISSNVQKDNEIEQLKRIISETSKIETQIMDIKPKRISSADPDKLQTEPLSTSFEISRNKIEDGSVVLDSCEVSTENDQSTRFPKPELEIQFTPLQPNKMAVKHPGCTTPVTVKIPKARKRKSNEMEEDLVKCENKKNATPRTNLKFPISDDRNSSVKKEQKVAIRPSSKKTYSLRSQASIIGVNLATKKKEGTLQKFGDFLQHSPSILQSKAKKIIETMSSSKLSNVEASKENVSQPKRAKRKLYTSEISSPIDISGQVILMDQKMKESDHQIIKRRLRTKTAK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28694 YIPF1::TUT4 ENSG00000058799.15::ENSG00000134744.14 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA YIPF1 ENSG00000058799.15 protein_coding - - chr1:53851719-53889798:- chr1:53860056:- chr1:54317392-54355471:- chr1:54325729:- TUT4 ENSG00000134744.14 protein_coding - - chr1:52408282-52553487:- chr1:52475535:- chr1:52873954-53019159:- chr1:52941207:- chr1:53855694,chr1:53855698 chr1:52476072,chr1:52476073 NA NA chr1:54321367,chr1:54321371 chr1:52941744,chr1:52941745 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 8 10 8 ONLY_REF_SPLICE YES_LDAS 0.2808 GT 1.7968 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28697 CAND1::ACSS3 ENSG00000111530.13::ENSG00000111058.8 KMS11 SRR8615354 SRR8652075 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CAND1 ENSG00000111530.13 protein_coding + + chr12:67269358-67319953:+ chr12:67295156:+ chr12:67663138-67713733:+ chr12:67688936:+ ACSS3 ENSG00000111058.8 protein_coding + + chr12:80936414-81261210:+ chr12:81022383:+ chr12:81330193-81654989:+ chr12:81416162:+ chr12:67297858,chr12:67297859 chr12:80987471,chr12:80987469 NA NA chr12:67691638,chr12:67691639 chr12:81381250,chr12:81381248 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:13.62Mb] 9 8 9 5.39 ONLY_REF_SPLICE YES_LDAS 0.2245 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-4699 chr12:81158388-81158461:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28701 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 288 FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3676145:- chr16:3701640-3767554:- chr16:3726146:- chr16:3802365,chr16:3802365,chr16:3802370,chr16:3802370 chr16:3677129,chr16:3677121,chr16:3677060,chr16:3677131 NA NA chr16:3852366,chr16:3852366,chr16:3852371,chr16:3852371 chr16:3727130,chr16:3727122,chr16:3727061,chr16:3727132 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Creb_binding|106-159|10^Creb_binding|322-340|9.7^zf-TAZ|354-405|1.6e-12^Creb_binding|443-482|0.096^KIX|550-629|4.6e-42^KIX_2|552-632|5.9e-10^Creb_binding|743-743|10^Creb_binding|825-852|4.2^Creb_binding|880-918|10 none ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["TRAP1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];NEIGHBORS[7457] 24 14 24 14 ONLY_REF_SPLICE YES_LDAS 0.3976 GT 1.9219 AG 1.6895 ENST00000382070.7 1-975 ENST00000246957.10 705-2115 chr16|-|[2]3810603-3810779[0]|[2]3850297-3851009[1]|[0]3879832-3879916[0]<==>chr16|-|[2]3658129-3658230[0]|[2]3658793-3658865[2]|[1]3661987-3662132[0]|[2]3662882-3662967[1]|[0]3663424-3663562[0]|[2]3664274-3664459[0]|[2]3665971-3666118[2]|[1]3671722-3671791[1]|[0]3672700-3672820[0]|[2]3674339-3674494[0]|[2]3675324-3675397[1]|[0]3676036-3676145[2] atggctgagaacttgctggacggaccgcccaaccccaaaagagccaaactcagctcgcccggtttctcggcgaatgacagcacagattttggatcattgtttgacttggaaaatgatcttcctgatgagctgatacccaatggaggagaattaggccttttaaacagtgggaaccttgttccagatgctgcttccaaacataaacaactgtcggagcttctacgaggaggcagcggctctagtatcaacccaggaataggaaatgtgagcgccagcagccccgtgcagcagggcctgggtggccaggctcaagggcagccgaacagtgctaacatggccagcctcagtgccatgggcaagagccctctgagccagggagattcttcagcccccagcctgcctaaacaggcagccagcacctctgggcccacccccgctgcctcccaagcactgaatccgcaagcacaaaagcaagtggggctggcgactagcagccctgccacgtcacagactggacctggtatctgcatgaatgctaactttaaccagacccacccaggcctcctcaatagtaactctggccatagcttaattaatcaggcttcacaagggcaggcgcaagtcatgaatggatctcttggggctgctggcagaggaaggggagctggaatgccgtaccctactccagccatgcagggcgcctcgagcagcgtgctggctgagaccctaacgcaggtttccccgcaaatgactggtcacgcgggactgaacaccgcacaggcaggaggcatggccaagatgggaataactgggaacacaagtccatttggacagccctttagtcaagctggagggcagccaatgggagccactggagtgaacccccagttagccagcaaacagagcatggtcaacagtttgcccaccttccctacagatatcaagaatacttcagtcaccaacgtgccaaatatgTTCTGGAGTGTTTGAAATCGCCGAAGCTTCGGGAGTTAGAACCGGGACAAAAATCATCATCCACCTGAAATCCGACTGCAAGGAGTTTTCCAGCGAGGCCCGGGTGCGAGATGTGGTAACGAAGTACAGCAACTTCGTCAGCTTCCCCTTGTACTTGAATGGAAGGCGGATGAACACCTTGCAGGCCATCTGGATGATGGACCCCAAGGATGTCCGTGAGTGGCAACATGAGGAGTTCTACCGCTACGTCGCGCAGGCTCACGACAAGCCCCGCTACACCCTGCACTATAAGACGGACGCACCGCTCAACATCCGCAGCATCTTCTACGTGCCCGACATGAAACCGTCCATGTTTGATGTGAGCCGGGAGCTGGGCTCCAGCGTTGCACTGTACAGCCGCAAAGTCCTCATCCAGACCAAGGCCACGGACATCCTGCCCAAGTGGCTGCGCTTCATCCGAGGTGTGGTGGACAGTGAGGACATTCCCCTGAACCTCAGCCGGGAGCTGCTGCAGGAGAGCGCACTCATCAGGAAACTCCGGGACGTTTTACAGCAGAGGCTGATCAAATTCTTCATTGACCAGAGTAAAAAAGATGCTGAGAAGTATGCAAAGTTTTTTGAAGATTACGGCCTGTTCATGCGGGAGGGCATTGTGACCGCCACCGAGCAGGAGGTCAAGGAGGACATAGCAAAGCTGCTGCGCTACGAGTCCTCGGCGCTGCCCTCCGGGCAGCTAACCAGCCTCTCAGAATACGCCAGCCGCATGCGGGCCGGCACCCGCAACATCTACTACCTGTGCGCCCCCAACCGTCACCTGGCAGAGCACTCACCCTACTATGAGGCCATGAAGAAGAAAGACACAGAGGTTCTCTTCTGCTTTGAGCAGTTTGATGAGCTCACCCTGCTGCACCTTCGTGAGTTTGACAAGAAGAAGCTGATCTCTGTGGAGACGGACATAGTCGTGGATCACTACAAGGAGGAGAAGTTTGAGGACAGGTCCCCAGCCGCCGAGTGCCTATCAGAGAAGGAGACGGAGGAGCTCATGGCCTGGATGAGAAATGTGCTGGGGTCGCGTGTCACCAACGTGAAGGTGACCCTCCGACTGGACACCCACCCTGCCATGGTCACCGTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCGCACAGCTCCTGCAGCCCACGCTGGAGATCAACCCCAGGCACGCGCTCATCAAGAAGCTGAATCAGCTGCGCGCAAGCGAGCCTGGCCTGGCTCAGCTGCTGGTGGATCAGATATACGAGAACGCCATGATTGCTGCTGGACTTGTTGACGACCCTAGGGCCATGGTGGGCCGCTTGAATGAGCTGCTTGTCAAGGCCCTGGAGCGACACTGA MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNMFWSV*NRRSFGS*NRDKNHHPPEIRLQGVFQRGPGARCGNEVQQLRQLPLVLEWKADEHLAGHLDDGPQGCP*VAT*GVLPLRRAGSRQAPLHPAL*DGRTAQHPQHLLRARHETVHV*CEPGAGLQRCTVQPQSPHPDQGHGHPAQVAALHPRCGGQ*GHSPEPQPGAAAGERTHQETPGRFTAEADQILH*PE*KRC*EVCKVF*RLRPVHAGGHCDRHRAGGQGGHSKAAALRVLGAALRAANQPLRIRQPHAGRHPQHLLPVRPQPSPGRALTLL*GHEEERHRGSLLL*AV**AHPAAPS*V*QEEADLCGDGHSRGSLQGGEV*GQVPSRRVPIREGDGGAHGLDEKCAGVACHQREGDPPTGHPPCHGHRAGDGGCPPLPAHAAAGQDPGGARTAPAAHAGDQPQARAHQEAESAARKRAWPGSAAGGSDIRERHDCCWTC*RP*GHGGPLE*AACQGPGATL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 28704 SMARCA4::C19orf44 ENSG00000127616.22::ENSG00000105072.9 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 286 FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:11041560:+ chr19:11071608-11190102:+ chr19:11152236:+ C19orf44 ENSG00000105072.9 protein_coding + + chr19:16496394-16521352:+ chr19:16509499:+ chr19:16607205-16632163:+ chr19:16620310:+ chr19:11044947,chr19:11044944 chr19:16508865,chr19:16508859 NA NA chr19:11155623,chr19:11155620 chr19:16619676,chr19:16619670 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame QLQ|171-205|2.7e-18^DUF2009|412-523|0.00017^Helicase_C|413-475|1.1^ResIII|449-512|2.1^HSA|462-531|2.9e-22^Helicase_C|545-589|8.1^ResIII|555-584|5.9^BRK|611-654|4.9e-21^SnAC|657-673|3.5^ResIII|754-913|5.1e-15^SNF2-rel_dom|757-1051|1.1e-104^DEAD|776-913|1.4e-09^Helicase_C|797-859|0.28^HDA2-3|1022-1218|5.1e-11^DUF2009|1035-1061|0.79^Helicase_C|1081-1194|3.9e-28^SnAC|1322-1389|1e-25^SnAC|1424-1447|3.2^HDA2-3|1494-1548|2^Bromodomain|1510-1581|3.4e-22^SnAC|1597-1618|6.6 none ["SMARCA4:Oncogene","SMARCA4:FoundationOne_panel","SMARCA4:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:5.43Mb] 16 17 16 16.24 ONLY_REF_SPLICE YES_LDAS 0.3373 GT 1.7465 AG 1.8323 ENST00000646693.2 1-4520 ENST00000221671.8 1150-1974 chr19|+|[0]10984152-10984373[2]|[0]10985273-10985405[0]|[1]10986189-10986593[0]|[1]10986905-10987003[0]|[1]10987666-10987924[1]|[2]10989317-10989443[2]|[0]10991150-10991323[2]|[0]10994828-10995001[2]|[0]10996213-10996380[2]|[0]10996494-10996544[2]|[0]11003029-11003159[1]|[2]11003340-11003397[2]|[0]11007902-11008023[1]|[2]11010381-11010531[2]|[0]11012949-11013112[1]|[2]11018957-11019023[2]|[0]11019591-11019701[2]|[0]11021725-11021967[2]|[0]11023518-11023631[2]|[0]11024331-11024438[2]|[0]11025422-11025508[2]|[0]11026300-11026346[1]|[2]11027784-11027950[0]|[1]11030730-11030893[2]|[0]11033290-11033517[2]|[0]11033767-11033865[2]|[0]11034123-11034200[2]|[0]11034914-11035132[2]|[0]11039458-11039553[2]|[0]11041307-11041560[1]<==>chr19|+|[0]16509499-16509988[0]|[1]16513014-16513109[0]|[1]16514497-16514663[2]|[0]16517230-16517301[2] atgtccactccagacccacccctgggcggaactcctcggccaggtccttccccgggccctggcccttcccctggagccatgctgggccctagcccgggtccctcgccgggctccgcccacagcatgatggggcccagcccagggccgccctcagcaggacaccccatccccacccaggggcctggagggtaccctcaggacaacatgcaccagatgcacaagcccatggagtccatgcatgagaagggcatgtcggacgacccgcgctacaaccagatgaaaggaatggggatgcggtcagggggccatgctgggatggggcccccgcccagccccatggaccagcactcccaaggttacccctcgcccctgggtggctctgagcatgcctctagtccagttccagccagtggcccgtcttcggggccccagatgtcttccgggccaggaggtgccccgctggatggtgctgacccccaggccttggggcagcagaaccggggcccaaccccatttaaccagaaccagctgcaccagctcagagctcagatcatggcctacaagatgctggccagggggcagcccctccccgaccacctgcagatggcggtgcagggcaagcggccgatgcccgggatgcagcagcagatgccaacgctacctccaccctcggtgtccgcaacaggacccggccctggccctggccctggccccggcccgggtcccggcccggcacctccaaattacagcaggcctcatggtatgggagggcccaacatgcctcccccaggaccctcgggcgtgccccccgggatgccaggccagcctcctggagggcctcccaagccctggcctgaaggacccatggcgaatgctgctgcccccacgagcacccctcagaagctgattcccccgcagccaacgggccgcccttcccccgcgccccctgccgtcccacccgccgcctcgcccgtgatgccaccgcagacccagtcccccgggcagccggcccagcccgcgcccatggtgccactgcaccagaagcagagccgcatcacccccatccagaagccgcggggcctcgaccctgtggagatcctgcaggagcgcgagtacaggctgcaggctcgcatcgcacaccgaattcaggaacttgaaaaccttcccgggtccctggccggggatttgcgaaccaaagcgaccattgagctcaaggccctcaggctgctgaacttccagaggcagctgcgccaggaggtggtggtgtgcatgcggagggacacagcgctggagacagccctcaatgctaaggcctacaagcgcagcaagcgccagtccctgcgcgaggcccgcatcactgagaagctggagaagcagcagaagatcgagcaggagcgcaagcgccggcagaagcaccaggaatacctcaatagcattctccagcatgccaaggatttcaaggaatatcacagatccgtcacaggcaaaatccagaagctgaccaaggcagtggccacgtaccatgccaacacggagcgggagcagaagaaagagaacgagcggatcgagaaggagcgcatgcggaggctcatggctgaagatgaggaggggtaccgcaagctcatcgaccagaagaaggacaagcgcctggcctacctcttgcagcagacagacgagtacgtggctaacctcacggagctggtgcggcagcacaaggctgcccaggtcgccaaggagaaaaagaagaaaaagaaaaagaagaaggcagaaaatgcagaaggacagacgcctgccattgggccggatggcgagcctctggacgagaccagccagatgagcgacctcccggtgaaggtgatccacgtggagagtgggaagatcctcacaggcacagatgcccccaaagccgggcagctggaggcctggctcgagatgaacccggggtatgaagtagctccgaggtctgatagtgaagaaagtggctcagaagaagaggaagaggaggaggaggaagagcagccgcaggcagcacagcctcccaccctgcccgtggaggagaagaagaagattccagatccagacagcgatgacgtctctgaggtggacgcgcggcacatcattgagaatgccaagcaagatgtcgatgatgaatatggcgtgtcccaggcccttgcacgtggcctgcagtcctactatgccgtggcccatgctgtcactgagagagtggacaagcagtcagcgcttatggtcaatggtgtcctcaaacagtaccagatcaaaggtttggagtggctggtgtccctgtacaacaacaacctgaacggcatcctggccgacgagatgggcctggggaagaccatccagaccatcgcgctcatcacgtacctcatggagcacaaacgcatcaatgggcccttcctcatcatcgtgcctctctcaacgctgtccaactgggcgtacgagtttgacaagtgggccccctccgtggtgaaggtgtcttacaagggatccccagcagcaagacgggcctttgtcccccagctccggagtgggaagttcaacgtcttgctgacgacgtacgagtacatcatcaaagacaagcacatcctcgccaagatccgttggaagtacatgattgtggacgaaggtcaccgcatgaagaaccaccactgcaagctgacgcaggtgctcaacacgcactatgtggcaccccgccgcctgctgctgacgggcacaccgctgcagaacaagcttcccgagctctgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtggtttaacgcaccctttgccatgaccggggaaaaggtggacctgaatgaggaggaaaccattctcatcatccggcgtctccacaaagtgctgcggcccttcttgctccgacgactcaagaaggaagtcgaggcccagttgcccgaaaaggtggagtacgtcatcaagtgcgacatgtctgcgctgcagcgagtgctctaccgccacatgcaggccaagggcgtgctgctgactgatggctccgagaaggacaagaagggcaaaggcggcaccaagaccctgatgaacaccatcatgcagctgcggaagatctgcaaccacccctacatgttccagcacatcgaggagtccttttccgagcacttggggttcactggcggcattgtccaagggctggacctgtaccgagcctcgggtaaatttgagcttcttgatagaattcttcccaaactccgagcaaccaaccacaaagtgctgctgttctgccaaatgacctccctcatgaccatcatggaagattactttgcgtatcgcggctttaaatacctcaggcttgatggaaccacgaaggcggaggaccggggcatgctgctgaaaaccttcaacgagcccggctctgagtacttcatcttcctgctcagcacccgggctggggggctcggcctgaacctccagtcggcagacactgtgatcatttttgacagcgactggaatcctcaccaggacctgcaagcgcaggaccgagcccaccgcatcgggcagcagaacgaggtgcgtgtgctccgcctctgcaccgtcaacagcgtggaggagaagatcctagctgcagccaagtacaagctcaacgtggaccagaaggtgatccaggccggcatgttcgaccagaagtcctccagccatgagcggcgcgccttcctgcaggccatcctggagcacgaggagcaggatgagagcagacactgcagcacgggcagcggcagtgccagcttcgcccacactgcccctccgccagcgggcgtcaaccccgacttggaggagccacctctaaaggaggaagacgaggtgcccgacgacgagaccgtcaaccagatgatcgcccggcacgaggaggagtttgatctgttcatgcgcatggacctggaccgcaggcgcgaggaggcccgcaaccccaagcggaagccgcgcctcatggaggaggacgagctcccctcgtggatcatcaaggacgacgcggaggtggagcggctgacctgtgaggaggaggaggagaagatgttcggccgtggctcccgccaccgcaaggaggtggactacagcgactcactgacggagaagcagtggctcaagaaaattacaggaaaagatatccatgacacagccagcagtgtggcacgtgggctacaattccagcgtggccttcagttctgcacacgtgcgtcaaaggccatcgaggagggcacgctggaggagatcgaagaggaggtccggcagaagaaatcatcacggaagcgcaagcgagacagcgacgccggctcctccaccccgaccaccagcacccgcagccgcgacaaggacgacgagagcaagaagcagaagaagcgcgggcggccgcctgccgagaaactctcccctaacccacccaacctcaccaagaagatgaagaagattgtggatgccgtgatcaagtacaaggacagGAGGAAAGTGCTCAGAGACAAAAAACAGCTGGCAAAATCTTCAGAGCCGAGGCGTCCACTGGGCAGGATGCCCCGAGGCAGGCCCAGGCGAGGAGCTGGGCATCACAGGGAAAGGCCGCCTCTGCAGAGGGGGATGAGAGCGAGGTCTCGGAGCATCTCAGTGCCAGCTCGGCTTCTGCCATCCAGCAGGACAGCACTTCCAGCATGCAGCCACCATCTGAAGCCCCCATGGTGAACACAGTCAGCTCAGCTTATTCGGAGGATTTTGAAAACTCTCCAAGTCTGACAGCATCTGAGCCAACCGCCCATTCCAAGGAGTCTCTTGACAGAACACTGGACGCTTTGTCTGAATCCTCTTCAAGTGTGAAGACAGACCTTCCACAAACAGCCGAGTCTAGGAAAAAGTCGGGCAGGCACGTGACAAGAGTGCTTGTGAAGGACACAGCTGTGCAGACGCCAGATCCTGCCTTCACCTACGAGTGGACCAAGGTGGCCAGCATGGCAGCCATGGGGCCTGCCCTGGGAGGCGCCTACGTGGACCCGACACCCATCGCCAATCATGTTATCAGTGCAGATGCAATAGAAGCCCTGACCGCTTACAGCCCGGCCGTGCTGGCACTCCATGATGTGCTGAAGCAGCAGCTGAGCCTGACGCAGCAGTTCATCCAGGCCAGCCGGCACCTGCACGCCTCCCTCCTGCGCTCCCTGGACGCGGACTCCTTCCACTACCACACCCTGGAGGAAGCCAAAGAGTACATTAGGTGCCACAGACCTGCCCCACTGACCATGGAGGATGCCCTGGAGGAGGTGAACAAGGAGCTGTGA MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDRRKVLRDKKQLAKSSEPRRPLGRMPRGRPRRGAGHHRERPPLQRGMRARSRSISVPARLLPSSRTALPACSHHLKPPW*TQSAQLIRRILKTLQV*QHLSQPPIPRSLLTEHWTLCLNPLQV*RQTFHKQPSLGKSRAGT*QECL*RTQLCRRQILPSPTSGPRWPAWQPWGLPWEAPTWTRHPSPIMLSVQMQ*KP*PLTARPCWHSMMC*SSS*A*RSSSSRPAGTCTPPSCAPWTRTPSTTTPWRKPKSTLGATDLPH*PWRMPWRR*TRSC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 28708 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 290 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59656027:+ chr17:57697045-57774317:+ chr17:57733388:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 10 8 10 8 ONLY_REF_SPLICE YES_LDAS 0.1883 GT 1.3383 AG 1.8062 ENST00000700709.1 1-984 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaaTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28710 CDK1::EBF1 ENSG00000170312.17::ENSG00000164330.18 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 289 FALSE NA FALSE NA CDK1 ENSG00000170312.17 protein_coding + + chr10:60778331-60794852:+ chr10:60780202:+ chr10:62538089-62554610:+ chr10:62539960:+ EBF1 ENSG00000164330.18 protein_coding - - chr5:158695920-159099916:- chr5:158731157:- chr5:158122928-158526924:- chr5:158158165:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|4-37~|9.1e-27^PK_Tyr_Ser-Thr-PARTIAL|6-37~|1.8e-17 none ["CDK1:Oncogene"];["EBF1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr5] 8 18 8 18 ONLY_REF_SPLICE YES_LDAS 0.2721 GT 1.3996 AG 1.6895 ENST00000373809.2 1-37 ENST00000380654.8 944-1683 chr10|+|[0]60780166-60780202[0]<==>chr5|-|[2]158699111-158699142[1]|[0]158707979-158708173[1]|[0]158712154-158712333[1]|[0]158712970-158713147[0]|[2]158714117-158714182[0]|[2]158731069-158731157[1] atggaagattataccaaaatagagaaaattggagaagCGCTCAACGAACCCACCATCGATTATGGTTTCCAGAGGTTACAGAAGGTCATTCCTCGGCACCCTGGTGACCCTGAGCGTTTGCCAAAGGAAGTAATACTCAAAAGGGCTGCGGATCTGGTAGAAGCACTGTATGGGATGCCACACAACAACCAGGAAATCATTCTGAAGAGAGCGGCCGACATTGCCGAGGCCCTGTACAGTGTTCCCCGCAACCACAACCAACTCCCGGCCCTTGCTAACACCTCGGTCCACGCAGGGATGATGGGCGTGAATTCGTTCAGTGGACAACTGGCCGTGAATGTCTCCGAGGCATCACAAGCCACCAATCAGGGTTTCACCCGCAACTCAAGCAGCGTATCACCACACGGGTACGTGCCGAGCACCACTCCCCAGCAGACCAACTATAACTCCGTCACCACGAGCATGAACGGATACGGCTCTGCCGCAATGTCCAATTTGGGCGGCTCCCCCACCTTCCTCAACGGCTCAGCTGCCAACTCCCCCTATGCCATAGTGCCATCCAGCCCCACCATGGCCTCCTCCACAAGCCTCCCCTCCAACTGCAGCAGCTCCTCGGGCATCTTCTCCTTCTCACCAGCCAACATGGTCTCAGCCGTGAAACAGAAGAGTGCTTTCGCACCAGTCGTCAGACCCCAGACCTCCCCACCTCCCACCTGCACCAGCACCAACGGGAACAGCCTGCAAGCGATATCTGGCATGATTGTTCCTCCTATGTGA MEDYTKIEKIGEALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVSPHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQAISGMIVPPM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Cyclin-dependent kinase 1 CMGC CDK CDC2 P06493 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE early B-cell factor 1 1 Yes lipoma mesenchymal TSG, fusion translocation 28714 AKT3::DNAH14 ENSG00000117020.19::ENSG00000185842.16 PATU8988T SRR8615359 SRR8670732 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 287 FALSE NA FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- DNAH14 ENSG00000185842.16 protein_coding + + chr1:224896262-225399292:+ chr1:225079207:+ chr1:225083964-225586994:+ chr1:225266909:+ chr1:243540853,chr1:243540857 chr1:225053362,chr1:225053358 NA NA chr1:243704155,chr1:243704159 chr1:225241064,chr1:225241060 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PH_20|5-74|6.8e-07^PH|7-105|1.9e-20^PH_11|8-103|0.00014^Pkinase|84-119|2.9^FTA2|142-183|0.00035^Pkinase|150-405|9.4e-83^PK_Tyr_Ser-Thr|151-388|1.8e-39^Kinase-like|152-178|0.41^PH|216-227|6.7^ABC1|223-295|3.3e-05^FTA2|253-279|0.0067^Kinase-like|255-384|4.1e-11^PH_11|342-359|4.4^Pkinase_C|426-473|7.7e-14 AAA_7-PARTIAL|~2425-2546|2.5e-41^AAA_22-PARTIAL|~2425-2500|1.4e-05^AAA_16-PARTIAL|~2425-2501|6.1e-07^AAA-PARTIAL|~2425-2456|0.00022^AAA_5|2434-2537|0.52^AAA_lid_1|2581-2669|4e-15^AAA_6|2599-2678|0.64^AAA_8|2664-2706|3.7^AAA_8|2731-2989|3e-79^Sigma54_activat|2735-2792|0.079^RuvB_N|2735-2771|0.026^Rad17|2736-2768|0.26^Mg_chelatase|2743-2770|0.64^AAA_16|2744-2801|1.3^T2SSE|2744-2768|5.3^nSTAND3|2745-2779|0.26^AAA_7|2747-2784|0.63^ABC_tran|2750-2773|1^AAA_22|2752-2806|1.2^AAA_29|2752-2767|2.8^AAA_5|2754-2789|0.015^AAA|2755-2816|0.026^AAA_9|2820-2855|7.3^AAA_lid_1|2942-2974|1.2^AAA_9|3002-3065|8.6^MT|3004-3334|2.7e-36^ABC_tran|3008-3078|6.5^RuvB_N|3015-3069|9.3^AAA_7|3018-3060|1.6^DHC_N2|3034-3055|7.4^AAA_18|3042-3089|0.92^Dynein_C|3272-3304|4.5^AAA_9|3363-3582|4.7e-79^Dynein_heavy|3393-3487|0.00017^Dynein_heavy|3915-4031|6.3e-33^AAA_lid_11|4069-4208|2.1e-51^Dynein_C|4215-4612|3.3e-89^AAA_9|4220-4257|5^DHC_N2|4283-4327|1.2^AAA_8|4380-4430|5.6 ["AKT3:Oncogene","AKT3:FoundationOne_panel","AKT3:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:18.09Mb] 1 13 1 9.67 ONLY_REF_SPLICE YES_LDAS 0.1117 GT 1.4566 AG 1.9329 ENST00000263826.12 1-1251 ENST00000682510.1 2425-13854 chr1|-|[2]243545510-243545597[2]|[1]243552729-243552943[0]|[2]243563720-243563848[0]|[2]243572926-243573048[0]|[2]243613671-243613739[0]|[2]243615096-243615161[0]|[2]243637611-243637742[0]|[2]243645893-243646037[2]|[1]243664772-243664883[1]|[0]243695591-243695716[1]|[0]243843125-243843170[0]<==>chr1|+|[0]225079207-225079548[2]|[0]225080379-225080748[0]|[1]225082549-225082739[2]|[0]225085544-225085789[2]|[0]225097118-225097239[1]|[2]225100713-225100884[2]|[0]225117684-225117788[2]|[0]225117881-225117999[1]|[2]225119220-225119294[1]|[2]225123527-225123614[2]|[0]225140768-225141021[1]|[2]225144397-225144628[2]|[0]225145326-225145379[2]|[0]225147104-225147249[1]|[2]225152005-225152073[1]|[2]225152697-225152883[2]|[0]225153750-225153826[1]|[2]225159314-225159485[2]|[0]225167939-225168028[2]|[0]225185291-225185425[2]|[0]225192696-225192911[2]|[0]225204183-225204273[0]|[1]225205971-225206179[2]|[0]225206968-225207220[0]|[1]225231073-225231151[1]|[2]225240593-225240822[0]|[1]225252301-225252417[0]|[1]225257960-225258118[0]|[1]225259121-225259253[1]|[2]225264197-225264261[0]|[1]225265182-225265369[2]|[0]225266641-225266769[2]|[0]225270735-225270866[2]|[0]225271906-225272073[2]|[0]225272955-225273125[2]|[0]225275914-225276081[2]|[0]225277410-225277502[2]|[0]225289885-225290082[2]|[0]225300869-225301030[2]|[0]225303156-225303347[2]|[0]225304908-225305089[1]|[2]225307461-225307569[2]|[0]225308285-225308410[2]|[0]225318583-225318677[1]|[2]225322664-225322823[2]|[0]225324222-225324353[2]|[0]225324737-225324832[2]|[0]225331437-225331577[2]|[0]225333291-225333506[2]|[0]225337266-225337496[2]|[0]225338061-225338182[1]|[2]225340457-225340701[0]|[1]225345962-225346380[2]|[0]225346456-225346654[0]|[1]225351647-225351883[0]|[1]225353803-225353888[2]|[0]225358496-225358652[0]|[1]225360681-225360891[1]|[2]225364792-225364894[2]|[0]225367805-225368032[2]|[0]225374688-225374885[2]|[0]225377237-225377436[1]|[2]225380159-225380322[0]|[1]225381383-225381579[2]|[0]225388379-225388491[1]|[2]225389734-225389873[0]|[1]225392291-225392451[2]|[0]225398520-225398666[2]|[0]225399054-225399269[2] atgagcgatgttaccattgtgaaagaaggttgggttcagaagaggggagaatatataaaaaactggaggccaagatacttccttttgaagacagatggctcattcataggatataaagagaaacctcaagatgtggatttaccttatcccctcaacaacttttcagtggcaaaatgccagttaatgaaaacagaacgaccaaagccaaacacatttataatcagatgtctccagtggactactgttatagagagaacatttcatgtagatactccagaggaaagggaagaatggacagaagctatccaggctgtagcagacagactgcagaggcaagaagaggagagaatgaattgtagtccaacttcacaaattgataatataggagaggaagagatggatgcctctacaacccatcataaaagaaagacaatgaatgattttgactatttgaaactactaggtaaaggcacttttgggaaagttattttggttcgagagaaggcaagtggaaaatactatgctatgaagattctgaagaaagaagtcattattgcaaaggatgaagtggcacacactctaactgaaagcagagtattaaagaacactagacatccctttttaacatccttgaaatattccttccagacaaaagaccgtttgtgttttgtgatggaatatgttaatgggggcgagctgtttttccatttgtcgagagagcgggtgttctctgaggaccgcacacgtttctatggtgcagaaattgtctctgccttggactatctacattccggaaagattgtgtaccgtgatctcaagttggagaatctaatgctggacaaagatggccacataaaaattacagattttggactttgcaaagaagggatcacagatgcagccaccatgaagacattctgtggcactccagaatatctggcaccagaggtgttagaagataatgactatggccgagcagtagactggtggggcctaggggttgtcatgtatgaaatgatgtgtgggaggttacctttctacaaccaggaccatgagaaactttttgaattaatattaatggaagacattaaatttcctcgaacactctcttcagatgcaaaatcattgctttcagggctcttgataaaggatccaaataaacgccttggtggaggaccagatgatgcaaaagaaattatgagacacagtttcttctctggagtaaactggcaagatgtatatgataaaaagGTTGTGGAATCATCATTGCAGCAGCTGGAATGTGATCCCACTGAAATAGAAGAATTTCTGGAGCATTTTATTTTTTTGAATGCAATTTCCTCAAAAATATCTAAATTAGAAAAAGAGTTCTTAACAATGTCTCAGCTATATTCTGTTGCAAAGCATCACCAGATCCATATTTCAGAAGAGCAAATTGCCATATTCCAAGTTCTTCTTCTTAAGTTTAGTCAACTAAAATCATCTATGAAGTTAAGTAAAATAAATAAAGACACTGCTATAACTAAATTCAGAGATAACTTGGAAGCATGTATCAGTGGTCTACATGTTGATGTTGGCAATTTAAAAGCCAAGATAAGAACTCCTCTTCTGTTATGTGCTGGTACTCAAGTGTCAACAGCAATGGAAATGATCCAGACTCTCTCAGGGGAAGCTGCAAGTTTAACTAACAAAGCTAAAGCATATTCACATTATCAGGATTGTTTCAGTGATTCTCAATCTCATATGCATTCTGTTAATGTGGAAGAAATTACACAGATTGTGCTTTCAGAGATCTCTGACATTGAAGGTGACTTGACTTTGAGGAAAAAACTATGGGAAGCACAAGAGGAGTGGAAGCGAGCCTCTTGGGAATGGAGGAATAGTTCTCTTCAAAGTATTGATGTAGAATCAGTACAGAGAAATGTTTCAAAACTGATGCACATAATCTCGGTACTAGAAAAAGGTTTACCTAAAAGCGATATGGTAACACATCTTAAGCAAGTGGTAACAGAGTTTAAACAAGAGCTGCCTATCATTATAGCTCTGGGAAATCCCTGTCTCAAGCCAAGGCATTGGGAGGCTCTCCAGGAGATTATTGGGAAGTCAGTTCCGCTTGATAAAAACTGTAAAGTAGAGAATCTTCTAGCTCTCAAGATGTTTCAGTATGAAAATGAAATAAATGATATGTCAACCTCAGCAACTAATGAAGCTGCTCTTGAAAAAATGCTATTTAAGATTATTGATTTTTGGAACACTACTCCTTTGCCTTTAATTCTTCACCACACAGAGATTTACTCTATCTTCATAATTCCATCTATAGATGACATATCAGCTCAGTTAGAAGAGTCTCAAGTCATACTTGCAACAATTAAAGGATCTCCCCACATTGGGCCCATTAAGGATCTTGTGAATGAATGGGATCAAAACTTGACTCTCTTCTCTTACACCCTTGAGGAATGGATGAATTGTCAAAGAAATTGGCTTTATCTTGAACCAGTCTTTCATTCTTCAGAAATACGAAGGCAACTCCCAGCAGAAACAGAACTTTTCTCTCAAGTGATTTCCATGTGGAAAAAAATAATGTCAAAAATACAAAACAAACAGAATGCTTTGCAGATAACCACTTCTGCAGGAGTCCTTGAAATTCTGCAAAATTGTAATATACATCTTGAACATATAAAGAAAAGCCTTGAGGATTACCTTGAAGTTAAAAGATTAATTTTCCCAAGATTTTACTTTCTTAGCAATGCCGAGCTTCTTGATATTCTAGCTGATAGCAGAAATCCTGAGTCTGTACAGCCTCATCTTGTGAAATGCTTTGAAAATATAAAACAATTATTGATATGGAAACAAGACATTGGCCCTCCTGCTGTAAAAATGCTAATATCTGCTGAAGGGGAAGGTCTCGTGCTGCCAAAGAAAATTCGTGTAAGAAGTGCTGTAGAACAGTGGCTGGTAAATGTAGAAAAAAGCATGTTCGATGTGCTAAAAAAATTTTTAAGTCAAGGGATTGAAGACTGGAACTGCCAGATGTTTTCCCAATGGGTGTTATCTCATCCAGGACAAGTGGTACTTACTGTGAGCCAGATCATGTTTTATAATGATTGTGTTAAAAGTTTTGTGAGTTCTTATTCAAGAGAAAAATTGGAAAAAGTCCACGCTGGTCTGATGTGTCATCTAGAAGAGGTTGCAGACCTGGTAGTGCTGGATACTAGTAACTCTCGAACAAAAGCTATACTAGGGGCATTGCTTATCCTTTATGTTCACTGCAGAGATATAGTGATAAATTTACTACTTAAAAATATCTTCAATGCAGAGGATTTTGAGTGGACAAGACATTTGCAATATAAATGGAATGAAAAACAAAAGTTGTGCTATGTGTCTCAAGGAAATGCCAGCTTTACTTATGGCTATGAGTACTTGGGCTGTACCTCAAGATTGGTTATTACGCCTCTCACAGACCGATGCTGGCTGACTCTCATGGAAGCACTACACTTGAATCTAGGAGGCTGTCCTGCCGGTCCAGCTGGTACAGGAAAAACTGAGACTGTCAAAGATCTAGCAAAATCCTTAGGCAAACATTGTGTGGTCTTCAACTGTTTTGAGGATTTGGATTATAAGATAGTGAGAAAATTTTTCTTTGGACTAGTTCAGTCAGGAGCATGGAGTTGTTTTGATGAATTCAATCTAATTGATTTGGAAGTTCTCTCTGTCATTGCCTCACAGATCCTAACAATTAAGGCTGCAAAAGACAACTATTCTGCCAGGTTTGTACTGGAAGGAAAAGAAATTCGTATCAATATGTCTTGTGCGGTATTTATCACCATGAATCCCAGATACGGAGGTGGAGTAGAGCTCCCAGATAACTTAAAATCTCTGTTTCGCCCAGTGGCAATGATGGTGCCCCATTATCAAATGATTGCTGAAATAATATTGTTTTCATTTGGTTTCAAATCTGCAAATTCACTCTCTGGAAAGCTAACTAACCTTTATGAATTAGCGCGCAAACAGCTCTCACAACAGGATCATTATAATTTTGGCTTGAGATCTCTGAAGATAGTTTTAATAATGGCTGGAACGAAGAAACGGGAGTTTAAATGTGATACCAGTGACAGTCTTTCTGAAGCAGATGAAACCTTGATTGTTATCGAGGCTATAAGAGAAGCTAGTTTGCCAAAATGTCCTCCTGAAGATGTCCCACTTTTTGAAAATATTATAGGAGATATTTTTCCAGAAGTGACAGTTTTGAAAGTAAATCAACTTGCCTTGGAGAAAGTAATATATACTGCAACTCAGCAATTGGGTTTACAAAACTGGTCATCTCAGAAAGAGAAGATTATACAGTTTTATAATCAACTTCAGGTTTGTGTTGGTGTGATGTTAGTGGGCCCAACAGGTGGAGGAAAGACAACAGTCAGAAGAATTTTGGAAAAAGCATTAACGCTATTACCAATTGCAGACTTCTTATCAGTTGCAGAAAGAAAATCTGCTTCAAAGATTTCAGAAAGAAAAGGAAAAGTAGATATTTGTGTTTTAAATCCAAAGTGTGTCACTCTCAGTGAACTATATGGACAACTGGATCCTAATACTATGGAATGGACTGATGGATTATTATCAGCAACAATTCGAAGTTATGTATATTTTAACACACCAAAGAACACAAAGAAAGACATTGATCTCAGACTAAAGTCAAGAATCTCAGATTTATCCAATGTTTTCAAACTTGATTCCTCTGATACAACAGAGACTGATGATAATATTTTTGAGGAGATAGAGAAAGTTGTTAAAATTCCAGAAAATCACAATTTTGATTGGCAGTGGATTATCCTAGATGGCCCAGTGGACACCTTTTGGGTAGAAAATCTGAACTCTGTGCTAGATGATACTAGAACATTGTGCCTAGCAAACAGTGAGAGAATAGCTTTAACTAATAAAATAAGAGTGATTTTTGAAGTGGACAATCTCTCTCAGGCCAGTCCTGCTACTGTCAGCCGATGTGCCATGGTCTATATGGATCCTGTTGATCTGGGATGGGAACCTTATGTTAAGTCATGGCTTCTGAAAACTTCTAAAATTATAAGTCAATCAGGAGTGGATTGTCTTGAATTCATGATTAAAAATAGTGTCACAGACGGACTACAATTTATAAGGAATCGTCAGAAATTTCAGCCATATCCTATGGAGGACATAACAGTCGTCATAACCCTCTGCAGAATTCTTGATGCTTTCTTTGACTTCATGGGTAAAAATGGAGGATTTGAACAAAGTGATGATTTGAATGACACGTCATCTAAGGAGGCAAATTCCCAAAGAGAGTCTGTCACATTCAAGGATATAGAAAAGAGGGATGAAAATACATGGTATCCAGAGAAAAATCCTGATAAATTAACAAAAATTATTCAAAAGCTTTTTGTGTTTGCCTTTACTTGGGCATTTGGAGGAGCTTTAAACCGTGAAGATGAACACAGAGAAAATATACCATTTTGTCCCAGTCTTGAACCTGATTCTCTTGCAAAAGTAACATACGATTTTGACAAACTTGTTCATGAATTATTTGGAAACAGTTCACAAGTAGGCATCAACCTACCAACTGGTGAATGTTCCATCTTTGGATATTTTGTGGATATAGAGCAATGTGAATTCATACCTTGGTCAGATTTAGTTCCTAATGATCAGACACTAATTCAAAGAGGAACTTCATTACTAACTAATCTTCAAAGATCTGGCGGAAACTTCTTGAAGATAACAGAATGTGGAGAATGCATTAATTATACCGCTACCAGAGACACAACATGCCTTTCTTTTCTCATGAGCCTTCTTTTAAAGAATTCCTGCCCTGTACTTCTCACAGGAGAATCTGGTGTTGGGAAAACTGCTGCCATTAATCAAATGCTTGAAAAGCTAGAGGGTCCAGGAGCATTTGACATAAAACATGGTTCAATTTTAGGAGACACCCTATTATATAGTGAAATAAAAAAATCAAGTAGCCTAAAACAGAATATCACCATCTTGATTCCTGAAACTCATAAGACAGCAACTGGAAGTTCAGATAATCCCACTAAAAAGCCAGAAGTTAGAACTAATAAAAAGTTACTTAAAAATAATGATCATAAAGGAGTTGTAGTCTCTACAATAAATTTTAGCACCAATGTAACAGCTGCCAAAACCAAGGAGATGATTCTTAAGAAGTTAATAAGAAGAACTAAAGATACTCTTGGAGCACCAAAAAACAACCGGATTCTAATATTTATTGATGATATGAATATGCCAGTATCAGATATGTATGGAGCACAGCCACCCCTGGAATTGATAAGACAATTGTTAGATTTGGGAGGAGTTTATGATACTGAAAAAAATACATGGAAGAATATTCAAGATCTGTCTATAGTTGCAGCTTGTGTTCCAGTTGTGAATGATATCAGCCCACGTCTTCTCAAACACTTTTCCATGCTGGTATTACCTCATCCTTCACAAGACATCTTATGTACTATTTTCCAGGCTCATTTGGGAATTTATTTCTCCATCAATAACTTCACACCTGAAGTTCAGAAAAGTAAGGATCAGATAATATCTTGTTCCCTAGCTATATACCATCAAGTACGTCAGAATATGTTACCAACTCCAACAAAATGTCACTACATGTTTAATCTTCGAGATATGTTTAAGCTTCTCCTAGGATTGCTGCAAGCTGACAGGACTGTTGTTAACTCCAAAGAGATGGCTGCTCTGCTCTTTGTTCATGAAGCCACCCGAGTATTTCACGATCGCTTAATTGATTTCACTGATAAAAGCCTTTTCTATCGGTTGCTTTCAAGGGAACTTGAGAACTGTTTTCAGATTCAGTGGACCCAAGAAAACCTGATGAATCACTCAACTGTATTTTTGGACTTCTTGGATATAAACAAGACTCATAGAAAAAAGATTTATCAGAATACCAGTGACTATAATAAACTTGCCAGTGTACTTGATGAATTCCAAATGAAGTTGGGTTCAATTTCTTTGGAGCTTTCTCATTCCATGGTGTTCTTCAAGGAAGCCATAGAACACATCATAAGAGCAACAAGGGTTCTTCGACAACCAGGGAGTCACATGTTACTGATTGGAATAGATGGATGTGGGAAAAAAACATGTGCAACCTTGGCCTGTTATTTGACAGATAATAAACTATACCGAGTGCCTATATCTCACAAATGTGCCTACATCGAATTCAAAGAAGTCTTTAAAAAGGTGTTTATTCACGCAGGATTAAAAGGGAAACCCACTGTTCTGATGGTTCCCAATTTAAACATAGAACAAGACTCATTTTTAGAAGATTTGAACTACATCATCAGTTCAGGAAGAATACCTGACCTGTTTGAAAATGTTGAGCTGGATTCTATTGCAATGAAAATCAGATATCTTACTGAACAATCTGGTCATATGGATAATAGGCAATCTTTACTTTCATTCTTTCAAAAGAGAATATATAAAAATCTTCATATTTTTGTGATCATGAGTCCTGAAGGACCTAGCTTCCGCCAAAATTGTAGAGTGTATCCTTCTATGATTAGCTCCTGCACGATCGATTGGTATGAGAGGTGGCCAGAAGAAGCTCTCCTTATTGTAGCTAACTCATTCTTAAAAGAAAAGGTCAATTTTGAGAACAGAGAGAACTTGAAAGAAAAACTTGCCCCAACATGTGTCCAAATCCACAAAAGCATGAAAGACTTGAACAGAAAATACTTTGAAGAAACTGGAAGATTTTATTATACCACTCCCAATAGCTACTTGCAATTTATGGAAACATTTGCACACATTTTGAGGGCACGAGAGGAAGAGATGCAAACAAAGAGGGATCGCTTCCATATGGGTCTATCCACAATCCTGGAAGCAACCACTCTAGTTACAGAAATGCAAGAAGAGCTCTTGATTCTTGGCCCTCAAGTAGAACAAAAAACAAAGGAAACAGAAACTCTAATGGAAAAACTACGGAAAGATTCACAAGTAGTTGAGAAAGTTCAGATGCTTGTTAAACAGGATGAAGAAATTGTGGCAGAAGAAGTAAGAATTGTGGAAGATTATGCTCAGAAAACTGCCAATGAACTAAAAAGTGTGCTGCCAGCCTTTGACAAGGCAATTGTGGCTCTGAATGCCCTGGATAAAGCTGATGTCGCTGAATTAAGAGTATACACACGGCCTCCCTTCCTTGTACTGACTGTCATGAATGCAGTGTGTATTCTTCTGCAAAAGAAACCTAACTGGGCAACGGCAAAGTTACTTCTTTCAGAAACTGGTTTCCTGAAAAAATTGATTAACCTTGACAAGGACAGCATACCTGATAAGGTTTTCGTGAAGCTAAAAAAAATTGTAACCTTACCTGATTTCAACCCACACAAGATTTCGCTGGTTTCTGTTGCTTGTTGCTCCCTGTGCCAGTGGGTTATAGCTTTGAATAACTACCATGAAGTACAGAAGGTTGTGGGCCCTAAACAAATCCAAGTAGCTGAAGCTCAAAACGTCCTTAAAATTGCGCGACAAAGACTTGCTGAGAAACAAAGAGGTTTACAGCTGGTTGAAGAACATTTGCTGTTTTTACAGGCAGCTTACAAAGATACCGTTGCTGAAAAACAACTATTAGCAAATCGGAAAACAATGGCCAGCAGGCGCTTTCAGTGTGCGTCAGTCTTACTAACTGTCCTGGAAGATGAGAAGACTCGATGGCAAGAAACAATCAATCAAATAGATAACAAATTAGAAGGAATTTTGGGTGACATACTTCTTTCAGCAGCGTGCATTGTCTACAGTGGAATTTTAACACCAGAATTTCGCCAGTTGATTGTGAATAAATGGGAGACATTCTGCATTGAAAATGGCATTTCTTTGTCTTCCAAATTCTCTTTAATTAAAGTTATGGCACAAAAATATGAGATCAGCCGATGGCATAATCAGGGACTGCCTCATGGTCAGTATTCAGTAGAGAATGCCATCTTGATCAAGAATGGCCAGCAGTGGCCACTGCTGATTGACCCACATAGGCAAGCTCACAAATGGATCCGTCAGATGGAAGGATCCAGGCTGCAGAAGCTCTCCATTGAAGACAGCAATTATACCAAAAAAATTGAAAATGCTATGAAGACAGGAGGGAGTGTCCTCCTGCAGAATCTCCTTGAGACATTAGCTCCAGGCTTAAAGGCAATTCTGAAAAAGGATATCTATCAGAAAAAAGGACACTATTTCATAAGGGTTGGTGATGCTGAGTTCGAATACAATTCAAATTTTAGGTTATACTTATCTACAGAAATAGACAACCCCCATTTTCTTCCATCAGTTTATAACTTTGTTACTATGATCAACTTCACTGTAACATTCCAAGGTTTGCAAGATCAACTCTTGTCTACTGTGGTAACTCATGAAGTTCCTCATTTAGAAGATCAACGTTCCAAGTTACTGGAGAGTATTTCCCTTGATGCCATAACTCTTGAAGAACTAGAGGAAAAAACATTAAATTTACTGCAGAAAGCACTAGGATCCATATTAGATGATGACAAAATTGTAGATACCTTAAGAAAATCCAAAATGACATCAAACGAAATTTCAAAGCGCATCGAAGCAACAAAAAAAGCTGAAAGTGAAATCCAAGCAATACGTAAAAACTATCTCCCCATTGCGACCCGAGGCGCCCTGCTCTACTTCCTAGTAGCTGATCTCACACAAATCAACTACATGTACCAGTTCTCCCTAGACTGGTTTCATCAGGTTTTTGTTTCATCAGTAGTTTCCAAAAGCAAAGAACAAGAACATAGTTTTAAAAGGGAGAAAGTGTCTCCAAAAGAAGTTCATGAGTTTATAAGTATTTCAAAAGAACCCAACCTGGAAAATGAGAAAAATCTCTTAGATAAGCATATTAAAAGTGCAATAGACATGTTGACAAAAAGTATTTTTAAGGTGGTTTCTTCAGCTCTATTTAATGAAGATAAACTTTGCTTCTCTTTTCGGCTTTGCACTGTAATCATGCAAAACAATGCTAATGGAAATCTAATACAGGATGACATTGGATTCCTACCAGAAGAAGAATGGAACATCTTTTTATATTCTGGCATATTGATAAATATTAAAAGTGCATTATCCCAGTCTAGACTTACTAGCACATTTGAAATAGGTGAAAGTCAACATCTTCAGTGGCTGTCAGATTCCAGGTGGAGGCAGTGCCAATATGTCAGCACTCACCTGGAACCATTTTCACTTCTGTGCAAATCCCTTTTATCAAACGTATCACAATGGGATACTTTTAAGAACAGTAAAGCAGTTTATTCTCTGATCAGCACACCTTTCTCTTCAGAAAATGCTTCATTGGAGGAAAATACAAAACCACCAGAGGAAACTGAACTTTTGAATGAAAATAAAGAAACGTGTAATCCTATAAATTTTCCCTGGGAGAAACTCACTTCATTTCAAAGACTTATTTTGGTAAAAGTTCTTAGACCAGAAAGTTTAAACAATTCAGTGAGAAAGTTTATAACTGAAAAAATGGGAAATAAGTATCTTCAAAGAACTGGAGTTAATTTGAAAGATGCATATAAAGGATCCAATGCCAGAACTCCGCTGATACTTATTCAAACTCATGGGATCGACCTTACCAATATCCTCCTGAGATTTGCACAAGAGTTAAAAGGAACAACACATCATGTGACCATAATTTCTCTGGGCCGTGACCAAGCAGCTAAAGCTGAAGACCTCATTTTAAAGGCACTAACAAAAACACAACAATGGGTCTTCCTCCAGAACTGCCATCTTGCAACATCATTTATGCCAAGGCTTTGCACAATTGTAGAATCTTTTAATAGTCCAAACGTGACAATAGACCCTGAGTTTCGGCTATGGTTAAGCTCAAAATCATACAGTTCTTTTCCAATTCCTGTTCTTAAAAAGGGTTTAAAGATTGCCGTGGAATCTCCCCAGGGATTGAAAAGTAACTTACTTCAGACATTTGGATGTACTGGGAGTGGAGAGGTAACAGAAGAGATATTTGAAAATCCTGACTGTGGACAATGGTGGAAAAAACTTTTATTTAGCCTATGTTTTTTCAATGCTGTAATCAATGAAAGAAAAAATTACGGAATATTGGGCTGGAATATTGCTTATAAATTTAATTCTTCAGACTTGGGGGTTGCCATTAAGGTGTTGGAAAATTCCCTGAGAGGACAGCCCAGCATTTCGTGGCAAGCACTGCGCTACCTGATTGGAGAAGTGATTTACGGTGGCCGGGTGATTGATAATTGGGACAAGCGATGCTTGAAGACCCTACTCTACAAATTTTGTAATCCTGAAGTGCTGAAAGATGACTTCAGTTTCTCCAGTGATGGGATATGTCTGCCAGTTCCAGGATCTGCAAGCATAAAGGACTACATACACATTATCCAGTCCTTACCTGATGATGACCTTCCCGAGGTCTTAGGAATACACCCAGAGGCCATCAGGAGCTGCTGGGAGACCCAGGGCGAAAAGTTTATTGAAAATCTGATTGCCATGCAACCAAAAACTACCACTGCCAACCTCATGATCAGACCTGAGCAGAGTAAGGATGAACTGGTGATGGAAATTCTATCCGACTTGCTAAAGCGGCTGCCACTGACAGTGGAGAAAGAAGAAATTGCTGTTGGAACTCCAAGCACATTGAAGAGCATGATGTCAAGCTCCATTTGGGAGTCTCTTTCTAAAAATCTCAAAGATCACGACCCCCTTATCCATTGTGTCTTGCTAACCTTTTTGAAGCAAGAAATTAAACGATTTGATAAGTTATTATTTGTCATACATAAATCCTTAAAAGATCTTCAGCTTGCTATAAAAGGAGAGATCATCCTCACCCAAGAATTGGAGGAAATATTTAACTCTTTTCTTAATATGAGAGTGCCTACATTGTGGCAGAAACACGCCTACAGATCTTGTAAGCCACTGAGTTCCTGGATTGATGATCTCATCCAGCGACTGAATTTCTTCAATACTTGGGCCAAAGTGGCTTATACTGCAATACAGCGTCGGTATATGAGATTTGTCACAGTTTGGAAGCAGTCTATTCCATCAACTAGCCAAAAATGCAAACACCCTGAGGATTCAGAGAACAATTTCTTTGAAGGGTTTCCTTCAAGATACTGGCTCCCAGCTTTCTTCTTTCCACAAGCCTTTCTTGCTGCTGTGCTTCAAGACTATGGGAGGTCCCGAGGAATCGCTGTGGATGCCCTCACCTTCACCCACCATGTGATTTCCAACACCACTGACAAGGATGAGAAGTTCTCCGTATTTATGCCAAAGAAACTCAACATAGTCAGGAGAGCGTTTAAGGGCTCAGCTTCCTCTCACACTGGAGTTTACATTTTTGGTTTATTCATCGAGGGGGCAAGATGGAATCGTGAACAGAAAATACTGGAAGACTCGCTGCCTCTGGAGATGTGCTGTGATTTTCCCGACATATACTTTTTGCCAACAAAGATTTCTACCAAAACACCAAATGCTTCCAACCAGACAGATTCAGAACTCTATGCTTTTGAATGCCCAGTTTACCAGACACCTGAGAGGTCAAGAATTTTGGCAACTACCGGTTTACCAACAAACTTTTTAACATCAGTGTATTTATCAACGAAGAAACCTCCTAGTCACTGGATCACAATGCGGGTTGCATTGCTTTGTGAGAAGAATGAAAAATAA MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERPKPNTFIIRCLQWTTVIERTFHVDTPEEREEWTEAIQAVADRLQRQEEERMNCSPTSQIDNIGEEEMDASTTHHKRKTMNDFDYLKLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKKVVESSLQQLECDPTEIEEFLEHFIFLNAISSKISKLEKEFLTMSQLYSVAKHHQIHISEEQIAIFQVLLLKFSQLKSSMKLSKINKDTAITKFRDNLEACISGLHVDVGNLKAKIRTPLLLCAGTQVSTAMEMIQTLSGEAASLTNKAKAYSHYQDCFSDSQSHMHSVNVEEITQIVLSEISDIEGDLTLRKKLWEAQEEWKRASWEWRNSSLQSIDVESVQRNVSKLMHIISVLEKGLPKSDMVTHLKQVVTEFKQELPIIIALGNPCLKPRHWEALQEIIGKSVPLDKNCKVENLLALKMFQYENEINDMSTSATNEAALEKMLFKIIDFWNTTPLPLILHHTEIYSIFIIPSIDDISAQLEESQVILATIKGSPHIGPIKDLVNEWDQNLTLFSYTLEEWMNCQRNWLYLEPVFHSSEIRRQLPAETELFSQVISMWKKIMSKIQNKQNALQITTSAGVLEILQNCNIHLEHIKKSLEDYLEVKRLIFPRFYFLSNAELLDILADSRNPESVQPHLVKCFENIKQLLIWKQDIGPPAVKMLISAEGEGLVLPKKIRVRSAVEQWLVNVEKSMFDVLKKFLSQGIEDWNCQMFSQWVLSHPGQVVLTVSQIMFYNDCVKSFVSSYSREKLEKVHAGLMCHLEEVADLVVLDTSNSRTKAILGALLILYVHCRDIVINLLLKNIFNAEDFEWTRHLQYKWNEKQKLCYVSQGNASFTYGYEYLGCTSRLVITPLTDRCWLTLMEALHLNLGGCPAGPAGTGKTETVKDLAKSLGKHCVVFNCFEDLDYKIVRKFFFGLVQSGAWSCFDEFNLIDLEVLSVIASQILTIKAAKDNYSARFVLEGKEIRINMSCAVFITMNPRYGGGVELPDNLKSLFRPVAMMVPHYQMIAEIILFSFGFKSANSLSGKLTNLYELARKQLSQQDHYNFGLRSLKIVLIMAGTKKREFKCDTSDSLSEADETLIVIEAIREASLPKCPPEDVPLFENIIGDIFPEVTVLKVNQLALEKVIYTATQQLGLQNWSSQKEKIIQFYNQLQVCVGVMLVGPTGGGKTTVRRILEKALTLLPIADFLSVAERKSASKISERKGKVDICVLNPKCVTLSELYGQLDPNTMEWTDGLLSATIRSYVYFNTPKNTKKDIDLRLKSRISDLSNVFKLDSSDTTETDDNIFEEIEKVVKIPENHNFDWQWIILDGPVDTFWVENLNSVLDDTRTLCLANSERIALTNKIRVIFEVDNLSQASPATVSRCAMVYMDPVDLGWEPYVKSWLLKTSKIISQSGVDCLEFMIKNSVTDGLQFIRNRQKFQPYPMEDITVVITLCRILDAFFDFMGKNGGFEQSDDLNDTSSKEANSQRESVTFKDIEKRDENTWYPEKNPDKLTKIIQKLFVFAFTWAFGGALNREDEHRENIPFCPSLEPDSLAKVTYDFDKLVHELFGNSSQVGINLPTGECSIFGYFVDIEQCEFIPWSDLVPNDQTLIQRGTSLLTNLQRSGGNFLKITECGECINYTATRDTTCLSFLMSLLLKNSCPVLLTGESGVGKTAAINQMLEKLEGPGAFDIKHGSILGDTLLYSEIKKSSSLKQNITILIPETHKTATGSSDNPTKKPEVRTNKKLLKNNDHKGVVVSTINFSTNVTAAKTKEMILKKLIRRTKDTLGAPKNNRILIFIDDMNMPVSDMYGAQPPLELIRQLLDLGGVYDTEKNTWKNIQDLSIVAACVPVVNDISPRLLKHFSMLVLPHPSQDILCTIFQAHLGIYFSINNFTPEVQKSKDQIISCSLAIYHQVRQNMLPTPTKCHYMFNLRDMFKLLLGLLQADRTVVNSKEMAALLFVHEATRVFHDRLIDFTDKSLFYRLLSRELENCFQIQWTQENLMNHSTVFLDFLDINKTHRKKIYQNTSDYNKLASVLDEFQMKLGSISLELSHSMVFFKEAIEHIIRATRVLRQPGSHMLLIGIDGCGKKTCATLACYLTDNKLYRVPISHKCAYIEFKEVFKKVFIHAGLKGKPTVLMVPNLNIEQDSFLEDLNYIISSGRIPDLFENVELDSIAMKIRYLTEQSGHMDNRQSLLSFFQKRIYKNLHIFVIMSPEGPSFRQNCRVYPSMISSCTIDWYERWPEEALLIVANSFLKEKVNFENRENLKEKLAPTCVQIHKSMKDLNRKYFEETGRFYYTTPNSYLQFMETFAHILRAREEEMQTKRDRFHMGLSTILEATTLVTEMQEELLILGPQVEQKTKETETLMEKLRKDSQVVEKVQMLVKQDEEIVAEEVRIVEDYAQKTANELKSVLPAFDKAIVALNALDKADVAELRVYTRPPFLVLTVMNAVCILLQKKPNWATAKLLLSETGFLKKLINLDKDSIPDKVFVKLKKIVTLPDFNPHKISLVSVACCSLCQWVIALNNYHEVQKVVGPKQIQVAEAQNVLKIARQRLAEKQRGLQLVEEHLLFLQAAYKDTVAEKQLLANRKTMASRRFQCASVLLTVLEDEKTRWQETINQIDNKLEGILGDILLSAACIVYSGILTPEFRQLIVNKWETFCIENGISLSSKFSLIKVMAQKYEISRWHNQGLPHGQYSVENAILIKNGQQWPLLIDPHRQAHKWIRQMEGSRLQKLSIEDSNYTKKIENAMKTGGSVLLQNLLETLAPGLKAILKKDIYQKKGHYFIRVGDAEFEYNSNFRLYLSTEIDNPHFLPSVYNFVTMINFTVTFQGLQDQLLSTVVTHEVPHLEDQRSKLLESISLDAITLEELEEKTLNLLQKALGSILDDDKIVDTLRKSKMTSNEISKRIEATKKAESEIQAIRKNYLPIATRGALLYFLVADLTQINYMYQFSLDWFHQVFVSSVVSKSKEQEHSFKREKVSPKEVHEFISISKEPNLENEKNLLDKHIKSAIDMLTKSIFKVVSSALFNEDKLCFSFRLCTVIMQNNANGNLIQDDIGFLPEEEWNIFLYSGILINIKSALSQSRLTSTFEIGESQHLQWLSDSRWRQCQYVSTHLEPFSLLCKSLLSNVSQWDTFKNSKAVYSLISTPFSSENASLEENTKPPEETELLNENKETCNPINFPWEKLTSFQRLILVKVLRPESLNNSVRKFITEKMGNKYLQRTGVNLKDAYKGSNARTPLILIQTHGIDLTNILLRFAQELKGTTHHVTIISLGRDQAAKAEDLILKALTKTQQWVFLQNCHLATSFMPRLCTIVESFNSPNVTIDPEFRLWLSSKSYSSFPIPVLKKGLKIAVESPQGLKSNLLQTFGCTGSGEVTEEIFENPDCGQWWKKLLFSLCFFNAVINERKNYGILGWNIAYKFNSSDLGVAIKVLENSLRGQPSISWQALRYLIGEVIYGGRVIDNWDKRCLKTLLYKFCNPEVLKDDFSFSSDGICLPVPGSASIKDYIHIIQSLPDDDLPEVLGIHPEAIRSCWETQGEKFIENLIAMQPKTTTANLMIRPEQSKDELVMEILSDLLKRLPLTVEKEEIAVGTPSTLKSMMSSSIWESLSKNLKDHDPLIHCVLLTFLKQEIKRFDKLLFVIHKSLKDLQLAIKGEIILTQELEEIFNSFLNMRVPTLWQKHAYRSCKPLSSWIDDLIQRLNFFNTWAKVAYTAIQRRYMRFVTVWKQSIPSTSQKCKHPEDSENNFFEGFPSRYWLPAFFFPQAFLAAVLQDYGRSRGIAVDALTFTHHVISNTTDKDEKFSVFMPKKLNIVRRAFKGSASSHTGVYIFGLFIEGARWNREQKILEDSLPLEMCCDFPDIYFLPTKISTKTPNASNQTDSELYAFECPVYQTPERSRILATTGLPTNFLTSVYLSTKKPPSHWITMRVALLCEKNEK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 28715 FGFR2::ULK4 ENSG00000066468.24::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 294 FALSE NA FALSE NA FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121593709:- chr10:123237846-123357972:- chr10:123353223:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- chr10:121578179 chr3:41263465 NA NA chr10:123337693 chr3:41304956 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame C2-set_2|44-79|0.14^Ig_3-PARTIAL|45-109~|3.8e-11^I-set-PARTIAL|46-109~|2.1e-08^Ig_2-PARTIAL|46-109~|1.3e-08^V-set|46-75|0.39^ig-PARTIAL|48-109~|2.3e-07^Ig_5-PARTIAL|51-109~|6.4e-05^Ig_4-PARTIAL|57-109~|0.0024^V-set-PARTIAL|92-109~|0.0007 none ["FGFR2:ArcherDX_panel","FGFR2:OncomapV4_panel","FGFR2:FoundationOne_panel","FGFR2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr3] 89 90 89 90 ONLY_REF_SPLICE YES_LDAS 2.3904 GT 1.8892 AG 1.9086 ENST00000369061.8 1-109 ENST00000301831.9 3679-3828 chr10|-|[0]121593709-121593817[0]<==>chr3|-|[2]41246929-41246992[2]|[1]41249489-41249574[0] atggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGGTTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAG MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPEDHLQ*EALGEPQECRQPPAGSGAAGPWEWFICRQCGGSLGPGNPPSRWAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 TRUE FALSE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 28716 HMCES::MECOM ENSG00000183624.14::ENSG00000085276.19 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 292 TRUE 578 TRUE 198 HMCES ENSG00000183624.14 protein_coding + + chr3:129278828-129306186:+ chr3:129302142:+ chr3:128997671-129025029:+ chr3:129020985:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169102226:- chr3:168801287-169381563:- chr3:168820014:- chr3:129302599,chr3:129302598 chr3:169112608,chr3:169112609 NA NA chr3:129021442,chr3:129021441 chr3:168830396,chr3:168830397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SRAP|1-258|1.4e-64^LssY_C|220-279|9.6e-06^SRAP|331-342|0.54 none ["MECOM:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:39.78Mb] 52 31 52 26.43 ONLY_REF_SPLICE YES_LDAS 1.0474 GT 1.8256 AG 1.9086 ENST00000383463.9 1-828 ENST00000464456.5 2014-3129 chr3|+|[0]129279733-129279915[2]|[0]129288854-129288997[2]|[0]129290679-129290804[2]|[0]129298354-129298535[1]|[2]129301950-129302142[2]<==>chr3|-|[2]169084909-169085043[0]|[2]169089000-169089183[2]|[1]169090000-169090236[2]|[1]169092958-169093102[1]|[0]169095076-169095245[2]|[1]169100885-169100962[2]|[1]169102060-169102226[0] atgtgtgggcgaacatcctgtcacttacctagagatgttctcacgagagcttgcgcctaccaggatcggcggggccagcagcggctcccggagtggagggaccctgataagtactgcccctcttacaacaagagtcctcaatccaacagcccagtgcttctgtctcgactgcactttgagaaggatgcagactcatctgagcgtatcattgctcccatgcgctggggcttggtcccttcttggttcaaagaaagtgatccttccaagctgcagttcaatactaccaactgtcgtagtgataccgtaatggagaaacggtcatttaaggtgcctctgggaaagggaagacgctgtgtcgttttagcagatggattctatgagtggcagcgatgtcagggaacaaaccagaggcagccatacttcatctattttcctcaaatcaagacagagaagtcaggtagcattggtgctgcagatagtcctgagaactgggagaaagtctgggacaactggaggctgctgacaatggccgggatctttgactgctgggagcccccagagggaggagatgtcctgtattcctataccatcatcacagtggattcctgcaaaggcttgagtgacatccaccacaggatgcctgccatattagatggagaggaggcagtttctaaatggcttgactttggtgaagtctcaactcaggaagctctgaaattaatccacccaacagagaacatcaccttccatgcagtctcttctgtggtgaacaactcgcgaaacaacactcctgagtgtctggctcctgtcgacttggtggtcaaaaagATGTCAGCTATTGAAAACATGGCAGAAAAGCTAGAGAGCTTCAGTGCCCTGAAACCTGAGGCCAGTGAGCTCTTACAGTCAGTGCCCTCTATGTTCAACTTCAGGGCGCCTCCCAATGCCCTGCCAGAGAACCTTCTGCGGAAGGGAAAGGAGCGCTATACCTGCAGATACTGTGGCAAGATTTTTCCAAGGTCTGCAAACCTAACACGGCACTTGAGAACCCACACAGGAGAGCAGCCTTACAGATGCAAATACTGTGACAGATCATTTAGCATATCTTCTAACTTGCAAAGGCATGTTCGCAACATCCACAATAAAGAGAAGCCATTTAAGTGTCACTTATGTGATAGGTGTTTTGGTCAACAAACCAATTTAGACAGACACCTAAAGAAACATGAGAATGGGAACATGTCCGGTACAGCAACATCGTCGCCTCATTCTGAACTGGAAAGTACAGGTGCGATTCTGGATGACAAAGAAGATGCTTACTTCACAGAAATTCGAAATTTCATTGGGAACAGCAACCATGGCAGCCAATCTCCCAGGAATGTGGAGGAGAGAATGAATGGCAGTCATTTTAAAGATGAAAAGGCTTTGGTGACCAGTCAAAATTCAGACTTGCTGGATGATGAAGAAGTTGAAGATGAGGTGTTGTTAGATGAGGAGGATGAAGACAATGATATTACTGGAAAAACAGGAAAGGAACCAGTGACAAGTAATTTACATGAAGGAAACCCTGAGGATGACTATGAAGAAACCAGTGCCCTGGAGATGAGTTGCAAGACATCCCCAGTGAGGTATAAAGAGGAAGAATATAAAAGTGGACTTTCTGCTCTAGATCATATAAGGCACTTCACAGATAGCCTCAAAATGAGGAAAATGGAAGATAATCAATATTCTGAAGCTGAGCTGTCTTCTTTTAGTACTTCCCATGTGCCAGAGGAACTTAAGCAGCCGTTACACAGAAAGTCCAAATCGCAGGCATATGCTATGATGCTGTCACTGTCTGACAAGGAGTCCCTCCATTCTACATCCCACAGTTCTTCCAACGTGTGGCACAGTATGGCCAGGGCTGCGGCGGAATCCAGTGCTATCCAGTCCATAAGCCACGTATGA MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFEKDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKMSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNALPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNVEERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDITGKTGKEPVTSNLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQYSEAELSSFSTSHVPEELKQPLHRKSKSQAYAMMLSLSDKESLHSTSHSSSNVWHSMARAAAESSAIQSISHV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 28719 CTNNB1::ULK4 ENSG00000168036.18::ENSG00000168038.11 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 295 FALSE NA FALSE NA CTNNB1 ENSG00000168036.18 protein_coding + + chr3:41194741-41260096:+ chr3:41199670:+ chr3:41236232-41301587:+ chr3:41241161:+ ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41249574:- chr3:41288090-42003622:- chr3:41291065:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CTNNB1:Oncogene","CTNNB1:FoundationOne_panel","CTNNB1:ArcherDX_panel","CTNNB1:OncomapV4_panel"];["DEEPEST2019","DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr3:0.01Mb];NEIGHBORS_OVERLAP:+:-:[13497] 13 151 13 148.72 ONLY_REF_SPLICE YES_LDAS 2.1596 GT 1.8062 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin (cadherin-associated protein), beta 1 1 Yes colorectal, ovarian, hepatoblastoma, pleomorphic salivary gland adenoma, other tumour types epithelial, mesenchymal, other oncogene, fusion missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 28720 PAFAH1B2::SIK3 ENSG00000168092.14::ENSG00000160584.17 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PAFAH1B2 ENSG00000168092.14 protein_coding + + chr11:117144284-117176894:+ chr11:117144418:+ chr11:117015000-117047610:+ chr11:117015134:+ SIK3 ENSG00000160584.17 protein_coding - - chr11:116843402-117098437:- chr11:116957064:- chr11:116714118-116969153:- chr11:116827780:- chr11:117148783,chr11:117148777 chr11:117082546,chr11:117082552 NA NA chr11:117019499,chr11:117019493 chr11:116953262,chr11:116953268 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Lipase_GDSL_2-PARTIAL|12-126~|2.5e-15^Gelsolin|42-82|4.2e-05 Pkinase-PARTIAL|~274-317|2.2e-80^PK_Tyr_Ser-Thr-PARTIAL|~274-313|2.3e-44^Haspin_kinase|1042-1071|2.9 ["PAFAH1B2:Oncogene"];["SIK3:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.05Mb];LOCAL_INVERSION:+:-:[45830] 12 12 12 12 ONLY_REF_SPLICE YES_LDAS 0.3206 GT 1.8892 AG 1.9656 ENST00000304808.10 1-126 ENST00000445177.6 274-4110 chr11|+|[0]117144293-117144418[2]<==>chr11|-|[2]116846396-116846553[1]|[0]116847476-116847608[0]|[2]116849120-116849283[1]|[0]116857810-116858699[2]|[1]116859265-116859604[1]|[0]116861274-116861383[2]|[1]116861841-116861926[0]|[2]116862202-116862327[0]|[2]116863668-116863818[2]|[1]116867946-116868089[2]|[1]116870331-116870401[0]|[2]116873481-116873636[0]|[2]116873903-116874056[2]|[1]116875158-116875267[0]|[2]116875374-116875451[0]|[2]116875866-116876009[0]|[2]116876253-116876363[0]|[2]116876924-116877042[1]|[0]116896253-116896376[0]|[2]116897193-116897317[1]|[0]116927219-116927380[1]|[0]116954044-116954107[0]|[2]116956948-116957064[0] gctgctgctggtgctggggccggaggagggacgcgccggagcgggaccgacgggaccgagcgagcgaccgacgcgccacccgccgacgcctcagccgcttggggcccgcacggaccctctacttcaGTTGCTATCAAGATCATAGATAAGACCCAGCTGGATGAAGAAAACTTGAAGAAGATTTTCCGGGAAGTTCAAATTATGAAGATGCTTTGCCACCCCCATATCATCAGGCTCTACCAGGTTATGGAGACAGAACGGATGATTTATCTGGTGACAGAATATGCTAGTGGAGGGGAAATATTTGACCACCTGGTGGCCCATGGTAGAATGGCAGAAAAGGAGGCACGTCGGAAGTTCAAACAGATCGTCACAGCTGTCTATTTTTGTCACTGTCGGAACATTGTTCATCGTGATTTAAAAGCTGAAAATTTACTTCTGGATGCCAATCTGAATATCAAAATAGCAGATTTTGGTTTCAGTAACCTCTTCACTCCTGGGCAGCTGCTGAAGACCTGGTGTGGCAGCCCTCCCTATGCTGCACCTGAACTCTTTGAAGGAAAAGAATATGATGGGCCCAAAGTGGACATCTGGAGCCTTGGAGTTGTCCTCTACGTGCTTGTGTGCGGTGCCCTGCCATTTGATGGAAGCACACTGCAGAATCTGCGGGCCCGCGTGCTGAGTGGAAAGTTCCGCATCCCATTTTTTATGTCCACAGAATGTGAGCATTTGATCCGCCATATGTTGGTGTTAGATCCCAATAAGCGCCTCTCCATGGAGCAGATCTGCAAGCACAAGTGGATGAAGCTAGGGGACGCCGATCCCAACTTTGACAGGTTAATAGCTGAATGCCAACAACTAAAGGAAGAAAGACAGGTGGACCCCCTGAATGAGGATGTCCTCTTGGCCATGGAGGACATGGGACTGGACAAAGAACAGACACTGCAGTCATTAAGATCAGATGCCTATGATCACTATAGTGCAATCTACAGCCTGCTGTGTGATCGACATAAGAGACATAAAACCCTGCGTCTCGGAGCACTTCCTAGCATGCCCCGAGCCCTGGCCTTTCAAGCACCAGTCAATATCCAGGCGGAGCAGGCAGGTACTGCTATGAACATCAGCGTTCCCCAGGTGCAGCTGATCAACCCAGAGAACCAAATTGTGGAGCCGGATGGGACACTGAATTTGGACAGTGATGAGGGTGAAGAGCCTTCCCCTGAAGCATTGGTGCGCTATTTGTCAATGAGGAGGCACACAGTGGGTGTGGCTGACCCACGCACGGAAGTTATGGAAGATCTGCAGAAGCTCCTACCTGGCTTTCCTGGAGTCAACCCCCAGGCTCCATTCCTGCAGGTGGCCCCTAATGTGAACTTCATGCACAACCTGTTGCCTATGCAAAACTTGCAACCAACCGGGCAACTTGAGTACAAGGAGCAGTCTCTCCTACAGCCGCCCACGCTACAGCTGTTGAATGGAATGGGCCCCCTTGGCCGGAGGGCATCAGATGGAGGAGCCAACATCCAACTGCATGCCCAGCAGCTGCTGAAGCGCCCACGGGGACCCTCTCCGCTTGTCACCATGACACCAGCAGTGCCAGCAGTTACCCCTGTGGACGAGGAGAGCTCAGACGGGGAGCCAGACCAGGAAGCTGTGCAGAGGTACTTGGCAAATAGGTCCAAAAGACATACACTGGCCATGACCAACCCTACAGCTGAGATCCCACCGGACCTACAACGGCAGCTAGGACAGCAGCCTTTCCGTTCCCGGGTCTGGCCTCCTCACCTGGTACCTGATCAGCATCGCTCTACCTACAAGGACTCCAACACTCTGCACCTCCCTACGGAGCGTTTCTCCCCTGTGCGCCGGTTCTCAGATGGGGCTGCGAGCATCCAGGCCTTCAAAGCTCACCTGGAAAAAATGGGCAACAACAGCAGCATCAAACAGCTGCAGCAGGAGTGTGAGCAGCTGCAGAAGATGTACGGGGGGCAGATTGATGAAAGAACCCTGGAGAAGACCCAGCAGCAGCATATGTTATACCAGCAGGAGCAGCACCATCAAATTCTCCAGCAACAAATTCAAGACTCTATCTGTCCTCCTCAGCCATCTCCACCTCTTCAGGCTGCATGTGAAAATCAGCCAGCCCTCCTTACCCATCAGCTCCAGAGGTTAAGGATTCAGCCTTCAAGCCCACCCCCCAACCACCCCAACAACCATCTCTTCAGGCAGCCCAGTAATAGTCCTCCCCCCATGAGCAGTGCCATGATCCAGCCTCACGGGGCTGCATCTTCTTCCCAGTTTCAAGGCTTACCTTCCCGCAGTGCAATCTTTCAGCAGCAACCTGAGAACTGTTCCTCTCCTCCCAACGTGGCACTAACCTGCTTGGGTATGCAGCAGCCTGCTCAGTCACAGCAGGTCACCATCCAAGTCCAAGAGCCTGTTGACATGCTCAGCAACATGCCAGGCACAGCTGCAGGCTCCAGTGGGCGCGGCATCTCCATCAGCCCCAGTGCTGGTCAGATGCAGATGCAGCACCGTACCAACCTGATGGCCACCCTCAGCTATGGGCACCGTCCCTTGTCCAAGCAGCTGAGTGCTGACAGTGCAGAGGCTCACAGCTTGAACGTGAATCGGTTCTCCCCTGCTAACTACGACCAGGCGCATTTACACCCCCATCTGTTTTCGGACCAGTCCCGGGGTTCCCCCAGCAGCTACAGCCCTTCAACAGGAGTGGGGTTCTCTCCAACCCAAGCCCTGAAAGTCCCTCCACTTGACCAATTCCCCACCTTCCCTCCCAGTGCACATCAGCAGCCGCCACACTATACCACGTCGGCACTACAGCAGGCCCTGCTGTCTCCCACGCCGCCAGACTATACAAGACACCAGCAGGTACCCCACATCCTTCAAGGACTGCTTTCTCCCCGGCATTCGCTCACCGGCCACTCGGACATCCGGCTGCCCCCAACAGAGTTTGCACAGCTCATTAAAAGGCAGCAGCAACAACGGCAGCAGCAGCAGCAACAGCAGCAACAGCAAGAATACCAGGAACTGTTCAGGCACATGAACCAAGGGGATGCGGGGAGTCTGGCTCCCAGCCTTGGGGGACAGAGCATGACAGAGCGCCAGGCTTTATCTTATCAAAATGCTGACTCTTATCACCATCACACCAGCCCCCAGCATCTGCTACAAATCAGGGCACAAGAATGTGTCTCACAGGCTTCCTCACCCACCCCGCCCCACGGGTATGCTCACCAGCCGGCACTGATGCATTCAGAGAGCATGGAGGAGGACTGCTCGTGTGAGGGGGCCAAGGATGGCTTCCAAGACAGTAAGAGTTCAAGTACATTGACCAAAGGTTGCCATGACAGCCCTCTGCTCTTGAGTACCGGTGGACCTGGGGACCCTGAATCTTTGCTAGGAACTGTGAGTCATGCCCAAGAATTGGGGATACATCCCTATGGTCATCAGCCAACTGCTGCATTCAGTAAAAATAAGGTGCCCAGCAGAGAGCCTGTCATAGGGAACTGCATGGATAGAAGTTCTCCAGGACAAGCAGTGGAGCTGCCGGATCACAATGGGCTCGGGTACCCAGCACGCCCCTCCGTCCATGAGCACCACAGGCCCCGGGCCCTCCAGAGACACCACACGATCCAGAACAGCGACGATGCTTATGTACAGCTGGATAACTTGCCAGGAATGAGTCTCGTGGCTGGGAAAGCACTTAGCTCTGCCCGGATGTCGGATGCAGTTCTCAGTCAGTCTTCGCTCATGGGCAGCCAGCAGTTTCAGGATGGGGAAAATGAGGAATGTGGGGCAAGCCTGGGAGGTCATGAGCACCCAGACCTGAGTGATGGCAGCCAGCATTTAAACTCCTCTTGCTATCCATCTACGTGTATTACAGACATTCTGCTCAGCTACAAGCACCCCGAAGTCTCCTTCAGCATGGAGCAGGCAGGCGTGTAA AAAGAGAGGGTRRSGTDGTERATDAPPADASAAWGPHGPSTSVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPNKRLSMEQICKHKWMKLGDADPNFDRLIAECQQLKEERQVDPLNEDVLLAMEDMGLDKEQTLQSLRSDAYDHYSAIYSLLCDRHKRHKTLRLGALPSMPRALAFQAPVNIQAEQAGTAMNISVPQVQLINPENQIVEPDGTLNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPGVNPQAPFLQVAPNVNFMHNLLPMQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTNPTAEIPPDLQRQLGQQPFRSRVWPPHLVPDQHRSTYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGQIDERTLEKTQQQHMLYQQEQHHQILQQQIQDSICPPQPSPPLQAACENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPSNSPPPMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQSQQVTIQVQEPVDMLSNMPGTAAGSSGRGISISPSAGQMQMQHRTNLMATLSYGHRPLSKQLSADSAEAHSLNVNRFSPANYDQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQFPTFPPSAHQQPPHYTTSALQQALLSPTPPDYTRHQQVPHILQGLLSPRHSLTGHSDIRLPPTEFAQLIKRQQQQRQQQQQQQQQQEYQELFRHMNQGDAGSLAPSLGGQSMTERQALSYQNADSYHHHTSPQHLLQIRAQECVSQASSPTPPHGYAHQPALMHSESMEEDCSCEGAKDGFQDSKSSSTLTKGCHDSPLLLSTGGPGDPESLLGTVSHAQELGIHPYGHQPTAAFSKNKVPSREPVIGNCMDRSSPGQAVELPDHNGLGYPARPSVHEHHRPRALQRHHTIQNSDDAYVQLDNLPGMSLVAGKALSSARMSDAVLSQSSLMGSQQFQDGENEECGASLGGHEHPDLSDGSQHLNSSCYPSTCITDILLSYKHPEVSFSMEQAGV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase SIK3 CAMK CAMKL QIK Q9Y2K2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa 1 Yes MLCLS leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28722 SNX19::FGFR2 ENSG00000120451.11::ENSG00000066468.24 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 296 FALSE NA FALSE NA SNX19 ENSG00000120451.11 protein_coding - - chr11:130866250-130916479:- chr11:130903255:- chr11:130736145-130786374:- chr11:130773150:- FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121520169:- chr10:123237846-123357972:- chr10:123279683:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PX|78-102|0.51^PXA|97-265|4.7e-46^Nexin_C|571-641|0.12^PX|572-657|5e-18^TssC|579-634|6.6e-05^PXA|675-741|0.039^Nexin_C|677-712|0.13^Nexin_C|838-945|1.4e-28^PX|889-912|2 PK_Tyr_Ser-Thr-PARTIAL|~749-758|1.4e-105^Pkinase-PARTIAL|~749-756|7.1e-49 ["FGFR2:ArcherDX_panel","FGFR2:OncomapV4_panel","FGFR2:FoundationOne_panel","FGFR2:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr10] 10 13 10 13 ONLY_REF_SPLICE YES_LDAS 0.3071 GT 1.9656 AG 1.8295 ENST00000265909.9 1-2573 ENST00000457416.7 749-2469 chr11|-|[1]130903255-130903384[1]|[0]130905953-130906133[0]|[2]130906625-130906721[2]|[1]130907953-130908083[0]|[2]130910018-130910137[0]|[2]130910270-130910370[1]|[0]130911633-130911771[0]|[2]130914266-130915939[0]<==>chr10|-|[2]121479857-121480021[0]|[2]121483698-121483803[2]|[1]121485395-121485532[2]|[1]121487354-121487424[0]|[2]121487991-121488113[0]|[2]121496532-121496722[1]|[0]121498495-121498605[1]|[0]121500826-121500947[2]|[1]121503790-121503941[0]|[2]121515117-121515319[1]|[0]121518682-121518829[0]|[2]121519979-121520169[1] atgaagacagaaacagtgccaccgttccaggaaactccagctggatcgagctgtcacctcaataacctgttgagtagccggaagctgatggctgtgggggtcttgcttggctggctcctggtcatacaccttctggtcaacgtgtggctgctgtgccttctgtcggcattgctagtggtgctgggaggatggctgggctccagcctcgctggagtggcttcaggtcgactgcatctggaacgcttcatcccgttggccacctgtcctccatgccctgaggcagaaaggcagctggaacgggagatcaaccgcaccatccagatgattattcgagattttgtgttatcttggtaccgttccgtgagccaggagccagcctttgaggaagaaatggaggcagccatgaaagggttggtccaggagcttcggagaaggatgagcgtgatggacagtcatgctgttgcccagagtgttctgactctctgcggttgtcacctgcagagctacattcaggcaaaggaggccactgcagggaagaatggtccagttgagccttcccacctctgggaggcttactgccgggcgactgccccacatcctgctgtgcacagccccagtgctgaagtcacctatacgcgtggcgttgtgaatttgttgcttcaagggctggtgcccaagccccacttggagactcgtaccggacgccatgtagtggtcgaactcatcacatgcaatgtaatcttaccactgatcagcaggctgtcagatcctgactggatccaccttgtactcgtgggtatcttttccaaggccagagatccagcaccctgcccagccagtgcccccgaacagccctcagtgccgacatctctgccactgattgctgaggtagagcagcttccagaagggagagcttctccagtagcagccccagtattcctaagttacagtgagccagagggttctgcaggcccctctccagaggttgaagaaggccacgaagctgtagagggagatttgggtgggatgtgtgaagaaagaaaagtaggaaacaactcatctcatttcctacagccaaatgttcgaggtcccctgttcttatgtgaagactcagagctggagtctccgctgtctgaactgggcaaagaaaccatcatgctcatgactccaggcagctttctctctgacaggattcaggatgccctgtgtgccctagagagttcccaggctctggaacccaaagatggtgaggcatctgaaggagcagaggctgaggagggtccagggacagaaacagagacaggcctgccggtctccacactgaattcctgcccagagatccatattgacacagcagacaaggagatagaacaaggagatgttaccgcctctgttacagctttgctggaggggccagaaaagacctgcccctcacggccgtcatgcttagagaaggatctcaccaatgatgtgagctcccttgatcctactctgccaccagttctgctttcctcctctccacctggtcctctcagctcagccaccttcagctttgagcccctaagcagtcccgatggtccagttatcatccagaaccttcgtatcactggcaccattacagcccgagagcacagtggcactggattccacccatacacactctatactgtgaagtacgagacagcccttgacggtgaaaacagcagcggcctgcagcagctggcctaccacactgtgaatcgtcgctatcgggagttcttgaatctgcagacccgtctggaggagaaaccagatctacgaaagttcatcaaaaatgtgaagggtcctaaaaagctctttccagatcttccattgggaaacatggacagtgacagagtagaagcccgtaagagcctcctagaatcattcctaaagcaactctgtgccattccggagatcgctaacagtgaggaggtgcaggagttccttgctctgaacacagatgctcgtattgcctttgtcaagaaaccatttatggtctctagaatagacaagatggtggtgagtgccattgtggacaccttgaagacagcgtttcctcgctctgaaccccagagccccacagaggagctgagtgaggccgagaccgaaagcaagccccagacagaaggcaagaaggctagcaagtctaggctgaggttctcatccagtaaaatttctccagcactaagtgtgactgaagcacaagacaagattctttattgtctccaggaaggcaatgtggagtctgagactctatccatgtctgcgatggaatcttttattgaaaaacagacaaagttactggaaatgcagccaacaaaagccccagaaaaagatcctgaacaacctcccaaaggacgtgtggacagttgcgtgtcagatgcagccgtgccagcccaagaccccagcaacagcgatccaggaacagagacagagttagctgacacagccctggatctgctcctcttgctactaacagaacagtggaaatggctatgtaccgaaaacatgcaaaagtttcttcgtcttatctttgggaccctagttcaaagAGCGATCGCCTCACCGGCCCATCCTCCAAGCCGGACTGCCGGCAAATGCCTCCACAGTGGTCGGAGGAGACGTAGAGTTTGTCTGCAAGGTTTACAGTGATGCCCAGCCCCACATCCAGTGGATCAAGCACGTGGAAAAGAACGGCAGTAAATACGGGCCCGACGGGCTGCCCTACCTCAAGGTTCTCAAGCACTCGGGGATAAATAGTTCCAATGCAGAAGTGCTGGCTCTGTTCAATGTGACCGAGGCGGATGCTGGGGAATATATATGTAAGGTCTCCAATTATATAGGGCAGGCCAACCAGTCTGCCTGGCTCACTGTCCTGCCAAAACAGCAAGCGCCTGGAAGAGAAAAGGAGATTACAGCTTCCCCAGACTACCTGGAGATAGCCATTTACTGCATAGGGGTCTTCTTAATCGCCTGTATGGTGGTAACAGTCATCCTGTGCCGAATGAAGAACACGACCAAGAAGCCAGACTTCAGCAGCCAGCCGGCTGTGCACAAGCTGACCAAACGTATCCCCCTGCGGAGACAGGTAACAGTTTCGGCTGAGTCCAGCTCCTCCATGAACTCCAACACCCCGCTGGTGAGGATAACAACACGCCTCTCTTCAACGGCAGACACCCCCATGCTGGCAGGGGTCTCCGAGTATGAACTTCCAGAGGACCCAAAATGGGAGTTTCCAAGAGATAAGCTGACACTGGGCAAGCCCCTGGGAGAAGGTTGCTTTGGGCAAGTGGTCATGGCGGAAGCAGTGGGAATTGACAAAGACAAGCCCAAGGAGGCGGTCACCGTGGCCGTGAAGATGTTGAAAGATGATGCCACAGAGAAAGACCTTTCTGATCTGGTGTCAGAGATGGAGATGATGAAGATGATTGGGAAACACAAGAATATCATAAATCTTCTTGGAGCCTGCACACAGGATGGGCCTCTCTATGTCATAGTTGAGTATGCCTCTAAAGGCAACCTCCGAGAATACCTCCGAGCCCGGAGGCCACCCGGGATGGAGTACTCCTATGACATTAACCGTGTTCCTGAGGAGCAGATGACCTTCAAGGACTTGGTGTCATGCACCTACCAGCTGGCCAGAGGCATGGAGTACTTGGCTTCCCAAAAATGTATTCATCGAGATTTAGCAGCCAGAAATGTTTTGGTAACAGAAAACAATGTGATGAAAATAGCAGACTTTGGACTCGCCAGAGATATCAACAATATAGACTATTACAAAAAGACCACCAATGGGCGGCTTCCAGTCAAGTGGATGGCTCCAGAAGCCCTGTTTGATAGAGTATACACTCATCAGAGTGATGTCTGGTCCTTCGGGGTGTTAATGTGGGAGATCTTCACTTTAGGGGGCTCGCCCTACCCAGGGATTCCCGTGGAGGAACTTTTTAAGCTGCTGAAGGAAGGACACAGAATGGATAAGCCAGCCAACTGCACCAACGAACTGTACATGATGATGAGGGACTGTTGGCATGCAGTGCCCTCCCAGAGACCAACGTTCAAGCAGTTGGTAGAAGACTTGGATCGAATTCTCACTCTCACAACCAATGAGGAATACTTGGACCTCAGCCAACCTCTCGAACAGTATTCACCTAGTTACCCTGACACAAGAAGTTCTTGTTCTTCAGGAGATGATTCTGTTTTTTCTCCAGACCCCATGCCTTACGAACCATGCCTTCCTCAGTATCCACACATAAACGGCAGTGTTAAAACATGA MKTETVPPFQETPAGSSCHLNNLLSSRKLMAVGVLLGWLLVIHLLVNVWLLCLLSALLVVLGGWLGSSLAGVASGRLHLERFIPLATCPPCPEAERQLEREINRTIQMIIRDFVLSWYRSVSQEPAFEEEMEAAMKGLVQELRRRMSVMDSHAVAQSVLTLCGCHLQSYIQAKEATAGKNGPVEPSHLWEAYCRATAPHPAVHSPSAEVTYTRGVVNLLLQGLVPKPHLETRTGRHVVVELITCNVILPLISRLSDPDWIHLVLVGIFSKARDPAPCPASAPEQPSVPTSLPLIAEVEQLPEGRASPVAAPVFLSYSEPEGSAGPSPEVEEGHEAVEGDLGGMCEERKVGNNSSHFLQPNVRGPLFLCEDSELESPLSELGKETIMLMTPGSFLSDRIQDALCALESSQALEPKDGEASEGAEAEEGPGTETETGLPVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEKTCPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPGPLSSATFSFEPLSSPDGPVIIQNLRITGTITAREHSGTGFHPYTLYTVKYETALDGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKPDLRKFIKNVKGPKKLFPDLPLGNMDSDRVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAETESKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGNVESETLSMSAMESFIEKQTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLCTENMQKFLRLIFGTLVQRAIASPAHPPSRTAGKCLHSGRRRRRVCLQGLQ*CPAPHPVDQARGKERQ*IRARRAALPQGSQALGDK*FQCRSAGSVQCDRGGCWGIYM*GLQLYRAGQPVCLAHCPAKTASAWKRKGDYSFPRLPGDSHLLHRGLLNRLYGGNSHPVPNEEHDQEARLQQPAGCAQADQTYPPAETGNSFG*VQLLHELQHPAGEDNNTPLFNGRHPHAGRGLRV*TSRGPKMGVSKR*ADTGQAPGRRLLWASGHGGSSGN*QRQAQGGGHRGREDVER*CHRERPF*SGVRDGDDEDDWETQEYHKSSWSLHTGWASLCHS*VCL*RQPPRIPPSPEATRDGVLL*H*PCS*GADDLQGLGVMHLPAGQRHGVLGFPKMYSSRFSSQKCFGNRKQCDENSRLWTRQRYQQYRLLQKDHQWAASSQVDGSRSPV**SIHSSE*CLVLRGVNVGDLHFRGLALPRDSRGGTF*AAEGRTQNG*ASQLHQRTVHDDEGLLACSALPETNVQAVGRRLGSNSHSHNQ*GILGPQPTSRTVFT*LP*HKKFLFFRR*FCFFSRPHALRTMPSSVSTHKRQC*NM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation 28726 HMCES::MECOM ENSG00000183624.14::ENSG00000085276.19 KATOIII SRR8615362 SRR8652060 STOMACH carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 293 TRUE 578 TRUE 198 HMCES ENSG00000183624.14 protein_coding + + chr3:129278828-129306186:+ chr3:129302142:+ chr3:128997671-129025029:+ chr3:129020985:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169107952:- chr3:168801287-169381563:- chr3:168825740:- chr3:129302599,chr3:129302598 chr3:169112608,chr3:169112609 NA NA chr3:129021442,chr3:129021441 chr3:168830396,chr3:168830397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SRAP|1-258|1.4e-64^LssY_C|220-279|9.6e-06^SRAP|331-342|0.54 none ["MECOM:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:39.78Mb] 8 32 8 5.57 ONLY_REF_SPLICE YES_LDAS 0.1812 GT 1.8256 AG 1.9086 ENST00000383463.9 1-828 ENST00000628990.2 2014-3156 chr3|+|[0]129279733-129279915[2]|[0]129288854-129288997[2]|[0]129290679-129290804[2]|[0]129298354-129298535[1]|[2]129301950-129302142[2]<==>chr3|-|[2]169084909-169085043[0]|[2]169089000-169089183[2]|[1]169090000-169090236[2]|[1]169092958-169093102[1]|[0]169095076-169095245[2]|[1]169100885-169100962[2]|[1]169102060-169102226[0]|[2]169107926-169107952[0] atgtgtgggcgaacatcctgtcacttacctagagatgttctcacgagagcttgcgcctaccaggatcggcggggccagcagcggctcccggagtggagggaccctgataagtactgcccctcttacaacaagagtcctcaatccaacagcccagtgcttctgtctcgactgcactttgagaaggatgcagactcatctgagcgtatcattgctcccatgcgctggggcttggtcccttcttggttcaaagaaagtgatccttccaagctgcagttcaatactaccaactgtcgtagtgataccgtaatggagaaacggtcatttaaggtgcctctgggaaagggaagacgctgtgtcgttttagcagatggattctatgagtggcagcgatgtcagggaacaaaccagaggcagccatacttcatctattttcctcaaatcaagacagagaagtcaggtagcattggtgctgcagatagtcctgagaactgggagaaagtctgggacaactggaggctgctgacaatggccgggatctttgactgctgggagcccccagagggaggagatgtcctgtattcctataccatcatcacagtggattcctgcaaaggcttgagtgacatccaccacaggatgcctgccatattagatggagaggaggcagtttctaaatggcttgactttggtgaagtctcaactcaggaagctctgaaattaatccacccaacagagaacatcaccttccatgcagtctcttctgtggtgaacaactcgcgaaacaacactcctgagtgtctggctcctgtcgacttggtggtcaaaaagTTCCAACTGCCTGATCAGAGAACTTGGATGTCAGCTATTGAAAACATGGCAGAAAAGCTAGAGAGCTTCAGTGCCCTGAAACCTGAGGCCAGTGAGCTCTTACAGTCAGTGCCCTCTATGTTCAACTTCAGGGCGCCTCCCAATGCCCTGCCAGAGAACCTTCTGCGGAAGGGAAAGGAGCGCTATACCTGCAGATACTGTGGCAAGATTTTTCCAAGGTCTGCAAACCTAACACGGCACTTGAGAACCCACACAGGAGAGCAGCCTTACAGATGCAAATACTGTGACAGATCATTTAGCATATCTTCTAACTTGCAAAGGCATGTTCGCAACATCCACAATAAAGAGAAGCCATTTAAGTGTCACTTATGTGATAGGTGTTTTGGTCAACAAACCAATTTAGACAGACACCTAAAGAAACATGAGAATGGGAACATGTCCGGTACAGCAACATCGTCGCCTCATTCTGAACTGGAAAGTACAGGTGCGATTCTGGATGACAAAGAAGATGCTTACTTCACAGAAATTCGAAATTTCATTGGGAACAGCAACCATGGCAGCCAATCTCCCAGGAATGTGGAGGAGAGAATGAATGGCAGTCATTTTAAAGATGAAAAGGCTTTGGTGACCAGTCAAAATTCAGACTTGCTGGATGATGAAGAAGTTGAAGATGAGGTGTTGTTAGATGAGGAGGATGAAGACAATGATATTACTGGAAAAACAGGAAAGGAACCAGTGACAAGTAATTTACATGAAGGAAACCCTGAGGATGACTATGAAGAAACCAGTGCCCTGGAGATGAGTTGCAAGACATCCCCAGTGAGGTATAAAGAGGAAGAATATAAAAGTGGACTTTCTGCTCTAGATCATATAAGGCACTTCACAGATAGCCTCAAAATGAGGAAAATGGAAGATAATCAATATTCTGAAGCTGAGCTGTCTTCTTTTAGTACTTCCCATGTGCCAGAGGAACTTAAGCAGCCGTTACACAGAAAGTCCAAATCGCAGGCATATGCTATGATGCTGTCACTGTCTGACAAGGAGTCCCTCCATTCTACATCCCACAGTTCTTCCAACGTGTGGCACAGTATGGCCAGGGCTGCGGCGGAATCCAGTGCTATCCAGTCCATAAGCCACGTATGA MCGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFEKDADSSERIIAPMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPYFIYFPQIKTEKSGSIGAADSPENWEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLDFGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVDLVVKKFQLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNALPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNVEERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDITGKTGKEPVTSNLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQYSEAELSSFSTSHVPEELKQPLHRKSKSQAYAMMLSLSDKESLHSTSHSSSNVWHSMARAAAESSAIQSISHV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 28731 FKBP2::DNAJC4 ENSG00000173486.14::ENSG00000110011.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 297 FALSE NA FALSE NA FKBP2 ENSG00000173486.14 protein_coding + + chr11:64241003-64244132:+ chr11:64243311:+ chr11:64008475-64011604:+ chr11:64010783:+ DNAJC4 ENSG00000110011.14 protein_coding + + chr11:64230278-64234286:+ chr11:64233894:+ chr11:63997750-64001758:+ chr11:64001366:+ chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533,chr11:64243533 chr11:64233073,chr11:64233058,chr11:64233057,chr11:64233056,chr11:64233053,chr11:64233033,chr11:64233025,chr11:64233016 NA NA chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005,chr11:64011005 chr11:64000545,chr11:64000530,chr11:64000529,chr11:64000528,chr11:64000525,chr11:64000505,chr11:64000497,chr11:64000488 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FKBP_C|71-163|1.9e-42 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];LOCAL_REARRANGEMENT:+:[6717] 260 294 260 294 ONLY_REF_SPLICE YES_LDAS 5.85 GT 1.6402 AG 1.7056 ENST00000652094.1 1-371 ENST00000321460.5 531-750 chr11|+|[0]64241665-64241747[1]|[2]64242384-64242558[2]|[0]64243199-64243311[1]<==>chr11|+|[2]64233894-64234113[2] atggccccgggcgtcctcgcgggggtggtctccgtggtggccgggcttggggacgccgtaggccgagaactccaccgggagagagacatgaggctgagctggttccgggtcctgacagtactgtccatctgcctgagcgccgtggccacggccacgggggccgagggcaaaaggaagctgcagatcggggtcaagaagcgggtggaccactgtcccatcaaatcgcgcaaaggggatgtcctgcacatgcactacacggggaagctggaagatgggacagagtttgacagcagcctgccccagaaccagccctttgtcttctcccttggcacaggccaggtcatcaagggctgggaccaggggctgctgggGAAGGTGAAGCAGATGCACCTTAACTTCATGGATGAAAAGGATCGGATCATCACAGCCTTCTACAACGAAGCCCGGGCACGGGCCAGGTCTGTCCCTGCTCTATTCTGCTCCCTGCTCCCTGTCCAGGAACCACACTTCGGGATCCCTATCCCAACCACCCAGGTGCCCTCTCCTCCAGGGCCAACAGAGGCATCCTTCAGCAGGAGCGACAACGGCTAG MAPGVLAGVVSVVAGLGDAVGRELHRERDMRLSWFRVLTVLSICLSAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGKVKQMHLNFMDEKDRIITAFYNEARARARSVPALFCSLLPVQEPHFGIPIPTTQVPSPPGPTEASFSRSDNG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28732 ARPC1A::MYH16 ENSG00000241685.10::ENSG00000002079.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ MYH16 ENSG00000002079.14 transcribed_unitary_pseudogene + + chr7:99238829-99311130:+ chr7:99306609:+ chr7:98836452-98908753:+ chr7:98904232:+ chr7:99335696,chr7:99335694 chr7:99306334,chr7:99306329 NA NA chr7:98933319,chr7:98933317 chr7:98903957,chr7:98903952 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.01Mb];LOCAL_REARRANGEMENT:+:[14768] 203 226 203 226 ONLY_REF_SPLICE YES_LDAS 4.5301 GT 1.9899 AG 1.585 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28733 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895898:- chr12:23682438-24715478:- chr12:24048832:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25203920:+ chr12:25348150-25362579:+ chr12:25356854:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SOX5:Oncogene"];["CCLE_StarF2019"] 116 132 116 74.33 ONLY_REF_SPLICE YES_LDAS 2.0098 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28737 CNN2::ILF3 ENSG00000064666.15::ENSG00000129351.18 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CNN2 ENSG00000064666.15 protein_coding + + chr19:1026586-1039068:+ chr19:1036562:+ chr19:1026585-1039067:+ chr19:1036561:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10670516:+ chr19:10764980-10803076:+ chr19:10781192:+ chr19:1037130,chr19:1037131 chr19:10661727,chr19:10661725 NA NA chr19:1037129,chr19:1037130 chr19:10772403,chr19:10772401 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr19:9.62Mb] 63 17 62.65 17 ONLY_REF_SPLICE YES_LDAS 0.8411 GT 1.9329 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28738 SOX5::ETFRF1 ENSG00000134532.20::ENSG00000205707.11 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE FALSE FALSE NA TRUE 591 TRUE 207 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23895793:- chr12:23682438-24715478:- chr12:24048727:- ETFRF1 ENSG00000205707.11 protein_coding + + chr12:25195216-25209645:+ chr12:25203920:+ chr12:25348150-25362579:+ chr12:25356854:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SOX5:Oncogene"];["CCLE_StarF2019"] 57 165 57 90.67 ONLY_REF_SPLICE YES_LDAS 1.5593 GT 1.7968 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28739 RHBDF2::TEX2 ENSG00000129667.13::ENSG00000136478.9 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 298 FALSE NA FALSE NA RHBDF2 ENSG00000129667.13 protein_coding - - chr17:76470891-76501790:- chr17:76481375:- chr17:74466973-74497872:- chr17:74477457:- TEX2 ENSG00000136478.9 protein_coding - - chr17:64147227-64263260:- chr17:64160933:- chr17:62224587-62340620:- chr17:62238293:- chr17:76479104,chr17:76479107 chr17:64163567,chr17:64163567 NA NA chr17:74475186,chr17:74475189 chr17:62240927,chr17:62240927 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame iRhom1-2_N-PARTIAL|128-150~|1.1e-89 none ["RHBDF2:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr17:12.21Mb] 56 37 56 37 ONLY_REF_SPLICE YES_LDAS 0.982 GT 1.9656 AG 1.8892 ENST00000313080.8 1-150 ENST00000584379.6 2672-3384 chr17|-|[2]76481375-76481524[0]<==>chr17|-|[2]64148969-64149091[0]|[2]64150841-64150961[2]|[1]64152945-64153154[2]|[1]64154842-64154967[2]|[1]64160801-64160933[1] atggcctctgctgacaagaatggcgggagcgtgtcctctgtgtccagcagccgcctgcagagccggaagccacccaacctctccatcaccatcccgccacccgagaaagagacccaggcccctggcgagcaggacagcatgctgcctgagGACTCTGGATTGATTTGGAAATGTCCTACAATGGGTCCTTTCTGATGACTCTCGAGACCAAAATGAATTTGACCAAACTAGGTAAAGAGCCTCTTGTTGAAGCCCTGAAGGTTGGAGAAATTGGCAAAGAAGGTTGCAGGCCCCGGGCATTCTGTCTGGCGGACAGCGATGAGGAATCCTCCAGCGCTGGCTCCTCCGAGGAAGACGATGCCCCAGAGCCCAGCGGGGGAGACAAACAGCTCCTCCCAGGGGCTGAAGGGTACGTTGGAGGTCATCGAACAAGTAAGATTATGAGGTTTGTTGATAAAATTACCAAGTCAAAATATTTCCAAAAAGCAACAGAGACAGAGTTTATTAAAAAGAAGATCGAAGAAGTCTCCAACACACCCCTGCTGCTCACTGTTGAAGTACAAGAATGTAGAGGAACCTTGGCGGTCAACATTCCACCACCCCCGACTGACCGAGTATGGTATGGTTTCCGAAAGCCACCACATGTGGAGCTGAAAGCTCGGCCAAAACTTGGAGAGAGAGAAGTGACTTTAGTTCATGTGACAGACTGGATAGAGAAGAAACTGGAGCAAGAGTTTCAGAAAGTTTTTGTCATGCCAAACATGGATGATGTTTATATCACTATAATGCACTCAGCCATGGACCCTCGCTCTACTTCCTGCCTCCTGAAAGACCCACCTGTGGAGGCTGCTGATCAGCCATGA MASADKNGGSVSSVSSSRLQSRKPPNLSITIPPPEKETQAPGEQDSMLPEDSGLIWKCPTMGPF**LSRPK*I*PN*VKSLLLKP*RLEKLAKKVAGPGHSVWRTAMRNPPALAPPRKTMPQSPAGETNSSSQGLKGTLEVIEQVRL*GLLIKLPSQNISKKQQRQSLLKRRSKKSPTHPCCSLLKYKNVEEPWRSTFHHPRLTEYGMVSESHHMWS*KLGQNLEREK*L*FM*QTG*RRNWSKSFRKFLSCQTWMMFISL*CTQPWTLALLPAS*KTHLWRLLISH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28741 SUMO2::FAM222B ENSG00000188612.12::ENSG00000173065.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 302 TRUE 595 FALSE NA SUMO2 ENSG00000188612.12 protein_coding - - chr17:75165586-75182959:- chr17:75182814:- chr17:73161681-73179054:- chr17:73178909:- FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28759764:- chr17:27082998-27182250:- chr17:27086782:- chr17:75182151,chr17:75182151,chr17:75182153 chr17:28759912,chr17:28759913,chr17:28759911 NA NA chr17:73178246,chr17:73178246,chr17:73178248 chr17:27086930,chr17:27086931,chr17:27086929 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Rad60-SLD-PARTIAL|18-21~|1.9e-30^ubiquitin-PARTIAL|18-21~|9.5e-18 FAM222A-PARTIAL|~195-562|4.7e-269 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:46.31Mb] 53 24 53 9.15 ONLY_REF_SPLICE YES_LDAS 0.6563 GT 1.5301 AG 1.9899 ENST00000420826.7 1-21 ENST00000583307.6 195-1689 chr17|-|[2]75182814-75182834[0]<==>chr17|-|[2]28758270-28759764[2] atggccgacgaaaagcccaagTGTGAAGGTTCCCCAGCGGAAACACGTTCGTCGTACTGTGAACGGCCTCGACACATCAGCCCAGCGCTACAGCCCCTACCCGACACAGGCTGCCACCAAGGCAGGCCTGCTTGCCATTGTCAAAGTGCCAGCCAAAAGCATACTCAAGGACTTTGACGGCACCCGAGCCCGGTTGCTCCCTGAGGCCATCATGAACCCCCCAGTGGCACCCTATGCTACTGTGGCACCCAGCACTTTAGCCCACCCCCAGGCCCAGGCTCTGGCCCGCCAGCAGGCCCTGCAGCATGCACAGACCCTGGCCCATGCCCCTCCCCAGACGCTGCAGCACCCTCAGGGTATCCCGCCACCCCAGGCACTGTCCCACCCTCAGAGCCTCCAGCAGCCTCAGGGCCTGGGCCACCCTCAGCCCATGGCCCAAACCCAGGGCTTGGTCCACCCTCAGGCCCTGGCTCACCAGGGTCTCCAGCACCCCCACAATCCCTTGCTGCATGGAGGCCGGAAGATGCCAGACTCAGATGCCCCCCCGAATGTGACCGTGTCTACCTCAACTATCCCCCTTTCAATGGCGGCCACTCTGCAGCACAGCCAGCCTCCGGACCTGAGTAGCATCGTGCACCAGATCAACCAGTTTTGCCAGACGAGGGCAGGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCCATTAGTCGCAGTCTGCTCATCAATGCAAGCACCCGGGTGTCGACCCACAGCGTCCCCACACCAATGCCTTCATGTGTGGTCAATCCCATGGAGCACACCCACGCGGCCACCGCCGCGTTGCCTGCTGCAGGTCCTGTCAACCTGCCCACAGGCATCTCTCGCGTCCCCACTGGCTACCCTAGCGACCTCAAGCCAGTCACCTGGAACCAGCACCAGCTGGCCCACCTACAGCAGATGTGCAGCGAGGCTAGTGGGACGCCAGCCCCTGGCCTGACAGGCAAGCATGCGGCAGGACGCGAGTTGGCAGGGCCTGGCTTTGTGGGCAAGGCCCCTGCCTACCCGCAGGAACTCTGCCTGGCGCAGTCCTTCCATCTGAAGCCACCCCTGGAAAAGCCGACCCCATCCCCACCAGTCAACGGCATGGCAGCCCCATTGGCCTACCCCAATGGTCACTACTTCCAACCCCTGTGGAACAACATTCTGCCCACTCCCAATAGCGACAGCTCGGGGTCTCAGGACCTTGCCATGCCGTTCCACGGTGGGCAGCCCACAGGTGCACCCCTCGACTGTGCGGCAGCTCCCGGGGCCCACTACCGAGCAGGGACCGGGGGCGGTCCAGTGGCAAGCCAGAACAGCTTGATGCAAACAGTGGATTACCTAAGTGGGGATTTCCAACAGGCCTGCTTCCGAGAACAGAGCCTGGCCATGCTGAGCAAGGCCCACCGAGCCCCTGGCAACCGAGCCCCCGATCCCACAGAGAGTCGAAGTCTTCATATTCAGCACCCAGGGTATAGATAG MADEKPKCEGSPAETRSSYCERPRHISPALQPLPDTGCHQGRPACHCQSASQKHTQGL*RHPSPVAP*GHHEPPSGTLCYCGTQHFSPPPGPGSGPPAGPAACTDPGPCPSPDAAAPSGYPATPGTVPPSEPPAASGPGPPSAHGPNPGLGPPSGPGSPGSPAPPQSLAAWRPEDARLRCPPECDRVYLNYPPFNGGHSAAQPASGPE*HRAPDQPVLPDEGRHQHYLSV*GPDRQPQPH*SQSAHQCKHPGVDPQRPHTNAFMCGQSHGAHPRGHRRVACCRSCQPAHRHLSRPHWLP*RPQASHLEPAPAGPPTADVQRG*WDASPWPDRQACGRTRVGRAWLCGQGPCLPAGTLPGAVLPSEATPGKADPIPTSQRHGSPIGLPQWSLLPTPVEQHSAHSQ*RQLGVSGPCHAVPRWAAHRCTPRLCGSSRGPLPSRDRGRSSGKPEQLDANSGLPKWGFPTGLLPRTEPGHAEQGPPSPWQPSPRSHRESKSSYSAPRV*I FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28743 CD47::IFT57 ENSG00000196776.17::ENSG00000114446.5 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 4742 TRUE 1790 CD47 ENSG00000196776.17 protein_coding - - chr3:108043091-108091862:- chr3:108047138:- chr3:107761938-107810709:- chr3:107765985:- IFT57 ENSG00000114446.5 protein_coding - - chr3:108160812-108222435:- chr3:108167864:- chr3:107879659-107941282:- chr3:107886711:- chr3:108044869,chr3:108044871 chr3:108168257,chr3:108168256 NA NA chr3:107763716,chr3:107763718 chr3:107887104,chr3:107887103 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[69787] 41 80 41 39.05 INCL_NON_REF_SPLICE YES_LDAS 0.8453 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28744 KRAS::SOX5 ENSG00000133703.14::ENSG00000134532.20 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 303 FALSE NA FALSE NA KRAS ENSG00000133703.14 protein_coding - - chr12:25205246-25250936:- chr12:25245274:- chr12:25358180-25403870:- chr12:25398208:- SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23846193:- chr12:23682438-24715478:- chr12:23999127:- chr12:25212906 chr12:23893216 NA NA chr12:25365840 chr12:24046150 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Septin|3-31|4.4e-05^AAA_7|3-34|0.00012^VapE-like_dom|3-32|0.00014^ThiF|3-20|0.00018^AAA_22|4-27|0.00013^Ras|5-37|2.2e-13^Roc|5-40|2.4e-09^RsgA_GTPase|5-26|3.6e-05^Ldh_1_N|5-31|6.3e-05^PglD_N|5-23|0.00013^NB-ARC|6-41|1.5e-05^nSTAND3|6-36|2.5e-05^AAA_14|6-31|3.5e-05^AAA_16|6-28|4.1e-05^ParA|6-23|4.8e-05^Hpr_kinase_C|6-26|5.4e-05^Viral_helicase1|6-38|6.7e-05^AAA_25|6-23|0.00011^CbiA|7-25|4.3e-05 MPS2-PARTIAL|~241-264|0.00016^MPS2|445-482|0.14^HMG_box_2|450-465|0.25^HMG_box|546-614|2.8e-26^HMG_box_2|547-609|9.5e-12 ["KRAS:FoundationOne_panel","KRAS:OncocartaV1_panel","KRAS:Oncogene","KRAS:OncomapV4_panel","KRAS:ArcherDX_panel"];["SOX5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.25Mb] 38 46 38 46 ONLY_REF_SPLICE YES_LDAS 0.887 GT 1.8295 AG 1.8256 ENST00000556131.2 1-111 ENST00000545921.5 241-2262 chr12|-|[2]25245274-25245384[0]<==>chr12|-|[2]23534219-23534522[2]|[1]23536453-23536669[1]|[0]23543211-23543384[1]|[0]23546316-23546424[0]|[2]23563258-23563403[1]|[0]23575661-23575838[0]|[2]23604387-23604533[0]|[2]23640812-23640897[1]|[0]23665444-23665564[0]|[2]23734684-23734752[0]|[2]23740867-23741039[1]|[0]23755638-23755724[1]|[0]23845983-23846193[0] atgactgaatataaacttgtggtagttggagctggtggcgtaggcaagagtgccttgacgatacagctaattcagaatcattttgtggacgaatatgatccaacaatagagGAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAAGGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGGGCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAAACCCCCAGTATTGAAAAACTACTCTCAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGGCGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCAGCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGTCAGCAAATGGAGCTGGCCAAGCAGCAACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTACAGCAACAACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCCCTCCTGATCAACGGACACTGGCTGCAGCTGCCCAGCAAGGATTCCTCCTCCCTCCAGGCTTCAGCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGCTGATCCCAACTACCATGGCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGCTAGCTGCAATGCAGGTATCTCCAGGAGGGAAGCTGCCAGGCATACCCCAAGGCAACCTTGGTGCTGCTGTATCTCCTACCAGCATTCACACAGACAAGAGCACAAACAGCCCACCACCCAAAAGCAAGGATGAAGTGGCACAGCCACTGAACCTATCAGCTAAACCCAAGACCTCTGATGGCAAATCACCCACATCACCCACCTCTCCCCATATGCCAGCTCTGAGAATAAACAGTGGGGCAGGCCCCCTCAAAGCCTCTGTCCCAGCAGCGTTAGCTAGTCCTTCAGCCAGAGTTAGCACAATAGGTTACTTAAATGACCATGATGCTGTCACCAAGGCAATCCAAGAAGCTCGGCAAATGAAGGAGCAACTCCGACGGGAACAACAGGTGCTTGATGGGAAGGTGGCTGTTGTGAATAGTCTGGGTCTCAATAACTGCCGAACAGAAAAGGAAAAAACAACACTGGAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAATCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTAGCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTTCAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCTAGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGTACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATGCGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGGTGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGTCTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAAGAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGTAGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAACTGA MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog 1 Yes pancreatic, colorectal, lung, thyroid, AML, other tumour types leukaemia_lymphoma, epithelial, mesenchymal, other oncogene missense FALSE NA NA NA NA NA NA NA NA NA 28745 ACSS1::BCAT1 ENSG00000154930.15::ENSG00000060982.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 299 TRUE 594 TRUE 209 ACSS1 ENSG00000154930.15 protein_coding - - chr20:25006230-25058980:- chr20:25013536:- chr20:24986866-25039616:- chr20:24994172:- BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24849949:- chr12:24962958-25102035:- chr12:25002883:- chr20:25013129,chr20:25013133,chr20:25013131 chr12:24864832,chr12:24864833,chr12:24865185 NA NA chr20:24993765,chr20:24993769,chr20:24993767 chr12:25017766,chr12:25017767,chr12:25018119 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ACAS_N|58-114|8e-20^AMP-binding|116-508|1e-86 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr12] 30 46 30 38.3 ONLY_REF_SPLICE YES_LDAS 0.7212 GT 1.8892 AG 1.7819 ENST00000432802.6 1-1579 ENST00000539282.5 547-1197 chr20|-|[0]25013536-25013662[0]|[2]25013961-25014073[1]|[0]25015138-25015230[1]|[0]25020010-25020147[1]|[0]25021389-25021536[0]|[2]25022940-25023092[0]|[2]25023466-25023641[1]|[0]25030759-25030958[2]|[1]25048085-25048181[1]|[0]25057769-25058102[0]<==>chr12|-|[2]24818008-24818049[0]|[2]24829823-24829897[0]|[2]24832723-24832863[0]|[2]24836511-24836596[1]|[0]24842082-24842224[2]|[1]24849786-24849949[0] atggcggcgcgcaccctgggccgcggcgtcgggaggctgctgggcagcctgcgagggctctcggggcagcccgcgcggccgccgtgcggggtgagcgcgccgcgcagggcggcctcgggaccctcgggcagcgctcccgcagttgcagcagcagcagcacagccaggctcgtatcccgcgctgagtgcacaggcagcccgggagccggccgccttctgggggcctctggcgcgggacactctcgtgtgggacaccccctaccacaccgtctgggactgcgacttcagcactggcaagatcggctggttcctgggaggccagttaaatgtctctgtcaactgcttggaccagcatgttcggaagtcccccgagagcgttgctttgatctgggagcgcgatgagcctggaacggaagtgaggatcacctacagggaactactggagaccacgtgccgcctggccaacacgctgaagaggcatggagtccaccgtggggaccgtgttgccatctacatgcccgtgtccccattggctgtggcagcaatgctggcctgtgccaggatcggagctgtccacacagtcatctttgctggcttcagtgcagagtccttggctgggaggatcaatgatgccaagtgcaaggtggttatcaccttcaaccaaggactccggggtgggcgcgtggtggagctgaagaaaatagtggatgaggctgtgaagcactgccccaccgtgcagcatgtcctggtggctcacaggacagacaacaaggtccacatgggggatctggacgtcccgctggagcaggaaatggccaaggaggaccctgtttgcgccccagagagcatgggcagtgaggacatgctcttcatgctgtacacctcagggagcaccggaatgcccaagggcatcgtccatacccaggcaggctacctgctctatgccgccctgactcacaagcttgtgtttgaccaccagccaggtgacatctttggctgtgtggccgacatcggttggattacaggacacagctacgtggtgtatgggcctctctgcaatggtgccaccagcgtcctttttgagagcaccccagtttatcccaatgctggtcggtactgggagacagtagagaggttgaagatcaatcagttctatggcgccccaacggctgtccggctgttgctgaaatacggtgatgcctgggtgaagaagtatgatcgctcctccctgcggaccctggggtcagtgggagagcccatcaactgtgaggcctgggagtggcttcacagggtggtgggggacagcaggtgcacgctggtggacacctggtggcagacagaaacaggtggcatctgcatcgcaccacggccctcggaagaaggggcggaaatcctccctgccatggcgatgaggcccttctttggcatcgtccccgtcctcatggatgagaagggcagcgtcgtggagggcagcaacgtctccggggccctgtgcatctcccaggcctggccgggcatggccaggaccatctatggcgaccaccagcgatttgtggacgcctacttcaaggcctacccagCCTTCTCTTGGAGTCAAGAAGCCTACCAAAGCCCTGCTCTTTGTACTCTTGAGCCCAGTGGGACCTTATTTTTCAAGTGGAACCTTTAATCCAGTGTCCCTGTGGGCCAATCCCAAGTATGTAAGAGCCTGGAAAGGTGGAACTGGGGACTGCAAGATGGGAGGGAATTACGGCTCATCTCTTTTTGCCCAATGTGAAGCAGTAGATAATGGGTGTCAGCAGGTCCTGTGGCTCTATGGAGAGGACCATCAGATCACTGAAGTGGGAACTATGAATCTTTTTCTTTACTGGATAAATGAAGATGGAGAAGAAGAACTGGCAACTCCTCCACTAGATGGCATCATTCTTCCAGGAGTGACAAGGCGGTGCATTCTGGACCTGGCACATCAGTGGGGTGAATTTAAGGTGTCAGAGAGATACCTCACCATGGATGACTTGACAACAGCCCTGGAGGGGAACAGAGTGAGAGAGATGTTTGGCTCTGGTACAGCCTGTGTTGTTTGCCCAGTTTCTGATATACTGTACAAAGGCGAGACAATACACATTCCAACTATGGAGAATGGTCCTAAGCTGGCAAGCCGCATCTTGAGCAAATTAACTGATATCCAGTATGGAAGAGAAGAGAGCGACTGGACAATTGTGCTATCCTGA MAARTLGRGVGRLLGSLRGLSGQPARPPCGVSAPRRAASGPSGSAPAVAAAAAQPGSYPALSAQAAREPAAFWGPLARDTLVWDTPYHTVWDCDFSTGKIGWFLGGQLNVSVNCLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGDLDVPLEQEMAKEDPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKGSVVEGSNVSGALCISQAWPGMARTIYGDHQRFVDAYFKAYPAFSWSQEAYQSPALCTLEPSGTLFFKWNL*SSVPVGQSQVCKSLERWNWGLQDGRELRLISFCPM*SSR*WVSAGPVALWRGPSDH*SGNYESFSLLDK*RWRRRTGNSSTRWHHSSRSDKAVHSGPGTSVG*I*GVREIPHHG*LDNSPGGEQSERDVWLWYSLCCLPSF*YTVQRRDNTHSNYGEWS*AGKPHLEQIN*YPVWKRRERLDNCAIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28746 TGFB1::RBPMS ENSG00000105329.11::ENSG00000157110.16 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 306 FALSE NA FALSE NA TGFB1 ENSG00000105329.11 protein_coding - - chr19:41301587-41353922:- chr19:41341883:- chr19:41807492-41859827:- chr19:41847788:- RBPMS ENSG00000157110.16 protein_coding + + chr8:30384511-30572256:+ chr8:30504286:+ chr8:30242027-30429773:+ chr8:30361803:+ chr19:41335391,chr19:41335393 chr8:30493640,chr8:30493638 NA NA chr19:41841296,chr19:41841298 chr8:30351157,chr8:30351155 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TGFb_propeptide|31-261|2.8e-50^TGF_beta|292-389|1.3e-27 none ["TGFB1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr8] 28 28 28 28 ONLY_REF_SPLICE YES_LDAS 0.5914 GT 1.9329 AG 1.9329 ENST00000221930.6 1-860 ENST00000517860.5 247-675 chr19|-|[1]41341883-41342030[1]|[0]41342170-41342247[1]|[0]41344747-41344864[0]|[2]41348295-41348455[1]|[0]41352690-41353044[0]<==>chr8|+|[0]30504286-30504436[0]|[1]30544494-30544771[2] atgccgccctccgggctgcggctgctgccgctgctgctaccgctgctgtggctactggtgctgacgcctggccggccggccgcgggactatccacctgcaagactatcgacatggagctggtgaagcggaagcgcatcgaggccatccgcggccagatcctgtccaagctgcggctcgccagccccccgagccagggggaggtgccgcccggcccgctgcccgaggccgtgctcgccctgtacaacagcacccgcgaccgggtggccggggagagtgcagaaccggagcccgagcctgaggccgactactacgccaaggaggtcacccgcgtgctaatggtggaaacccacaacgaaatctatgacaagttcaagcagagtacacacagcatatatatgttcttcaacacatcagagctccgagaagcggtacctgaacccgtgttgctctcccgggcagagctgcgtctgctgaggctcaagttaaaagtggagcagcacgtggagctgtaccagaaatacagcaacaattcctggcgatacctcagcaaccggctgctggcacccagcgactcgccagagtggttatcttttgatgtcaccggagttgtgcggcagtggttgagccgtggaggggaaattgagggctttcgccttagcgcccactgctcctgtgacagcagggataacacactgcaagtggacatcaacgggttcactaccggccgccgaggtgacctggccaccattcatggcatgaaccggcctttcctgcttctcatggccaccccgctggagagggcccagcatctgcaaagctcccggcaccgccgagccctggacaccaactattgcttcagGGCATCCGCTTCGATCCTGAAATTCCGCAAACACTACGACTAGAGTTTGCTAAGGCAAACACGAAGATGGCCAAGAACAAACTCGTAGGGACTCCAAACCCCAGTACTCCTCTGCCCAACACTGTACCTCAGTTCATTGCCAGAGAGCCATATGAGCTCACAGTGCCTGCACTTTACCCCAGTAGCCCTGAAGTGTGGGCCCCGTACCCTCTGTACCCAGCGGAGTTAGCGCCTGCTCTACCTCCTCCTGCTTTCACCTATCCCGCTTCACTGCATGCCCAGGTAATTGATACCCATCGGCCAGGACTTCACTCACTTCACCACCAGTCCTTTCAAACTTGGTTCCCGAGAGCACACCATACAACTAACACCTATCCAGCTAACAGATCCACCCTCAAGAGATTAATGATCCCCTCTAAATCAAGCTGA MPPSGLRLLPLLLPLLWLLVLTPGRPAAGLSTCKTIDMELVKRKRIEAIRGQILSKLRLASPPSQGEVPPGPLPEAVLALYNSTRDRVAGESAEPEPEPEADYYAKEVTRVLMVETHNEIYDKFKQSTHSIYMFFNTSELREAVPEPVLLSRAELRLLRLKLKVEQHVELYQKYSNNSWRYLSNRLLAPSDSPEWLSFDVTGVVRQWLSRGGEIEGFRLSAHCSCDSRDNTLQVDINGFTTGRRGDLATIHGMNRPFLLLMATPLERAQHLQSSRHRRALDTNYCFRASASILKFRKHYD*SLLRQTRRWPRTNS*GLQTPVLLCPTLYLSSLPESHMSSQCLHFTPVALKCGPRTLCTQRS*RLLYLLLLSPIPLHCMPR*LIPIGQDFTHFTTSPFKLGSREHTIQLTPIQLTDPPSRD**SPLNQA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28747 CD47::IFT57 ENSG00000196776.17::ENSG00000114446.5 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 4742 TRUE 1790 CD47 ENSG00000196776.17 protein_coding - - chr3:108043091-108091862:- chr3:108045291:- chr3:107761938-107810709:- chr3:107764138:- IFT57 ENSG00000114446.5 protein_coding - - chr3:108160812-108222435:- chr3:108167864:- chr3:107879659-107941282:- chr3:107886711:- chr3:108044869,chr3:108044871 chr3:108168257,chr3:108168256 NA NA chr3:107763716,chr3:107763718 chr3:107887104,chr3:107887103 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[69787] 27 96 27 56.95 INCL_NON_REF_SPLICE YES_LDAS 0.8865 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28749 SOX9-AS1::VMP1 ENSG00000234899.11::ENSG00000062716.13 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 313 FALSE NA FALSE NA SOX9-AS1 ENSG00000234899.11 lncRNA - - chr17:72067099-72237203:- chr17:72120763:- chr17:70063240-70233344:- chr17:70116904:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:72117711,chr17:72117717 chr17:59746745,chr17:59746739 NA NA chr17:70113852,chr17:70113858 chr17:57824106,chr17:57824100 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:12.19Mb] 18 0 18 0 ONLY_REF_SPLICE YES_LDAS 0.1901 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28751 ACSS1::BCAT1 ENSG00000154930.15::ENSG00000060982.15 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 300 TRUE 594 TRUE 209 ACSS1 ENSG00000154930.15 protein_coding - - chr20:25006230-25058980:- chr20:25013961:- chr20:24986866-25039616:- chr20:24994597:- BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24849949:- chr12:24962958-25102035:- chr12:25002883:- chr20:25013129,chr20:25013133,chr20:25013131 chr12:24864832,chr12:24864833,chr12:24865185 NA NA chr20:24993765,chr20:24993769,chr20:24993767 chr12:25017766,chr12:25017767,chr12:25018119 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ACAS_N|58-114|8e-20^AMP-binding|116-508|1e-86 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr12] 17 29 17 7.7 ONLY_REF_SPLICE YES_LDAS 0.2608 GT 1.9086 AG 1.7819 ENST00000432802.6 1-1452 ENST00000539282.5 547-1197 chr20|-|[2]25013961-25014073[1]|[0]25015138-25015230[1]|[0]25020010-25020147[1]|[0]25021389-25021536[0]|[2]25022940-25023092[0]|[2]25023466-25023641[1]|[0]25030759-25030958[2]|[1]25048085-25048181[1]|[0]25057769-25058102[0]<==>chr12|-|[2]24818008-24818049[0]|[2]24829823-24829897[0]|[2]24832723-24832863[0]|[2]24836511-24836596[1]|[0]24842082-24842224[2]|[1]24849786-24849949[0] atggcggcgcgcaccctgggccgcggcgtcgggaggctgctgggcagcctgcgagggctctcggggcagcccgcgcggccgccgtgcggggtgagcgcgccgcgcagggcggcctcgggaccctcgggcagcgctcccgcagttgcagcagcagcagcacagccaggctcgtatcccgcgctgagtgcacaggcagcccgggagccggccgccttctgggggcctctggcgcgggacactctcgtgtgggacaccccctaccacaccgtctgggactgcgacttcagcactggcaagatcggctggttcctgggaggccagttaaatgtctctgtcaactgcttggaccagcatgttcggaagtcccccgagagcgttgctttgatctgggagcgcgatgagcctggaacggaagtgaggatcacctacagggaactactggagaccacgtgccgcctggccaacacgctgaagaggcatggagtccaccgtggggaccgtgttgccatctacatgcccgtgtccccattggctgtggcagcaatgctggcctgtgccaggatcggagctgtccacacagtcatctttgctggcttcagtgcagagtccttggctgggaggatcaatgatgccaagtgcaaggtggttatcaccttcaaccaaggactccggggtgggcgcgtggtggagctgaagaaaatagtggatgaggctgtgaagcactgccccaccgtgcagcatgtcctggtggctcacaggacagacaacaaggtccacatgggggatctggacgtcccgctggagcaggaaatggccaaggaggaccctgtttgcgccccagagagcatgggcagtgaggacatgctcttcatgctgtacacctcagggagcaccggaatgcccaagggcatcgtccatacccaggcaggctacctgctctatgccgccctgactcacaagcttgtgtttgaccaccagccaggtgacatctttggctgtgtggccgacatcggttggattacaggacacagctacgtggtgtatgggcctctctgcaatggtgccaccagcgtcctttttgagagcaccccagtttatcccaatgctggtcggtactgggagacagtagagaggttgaagatcaatcagttctatggcgccccaacggctgtccggctgttgctgaaatacggtgatgcctgggtgaagaagtatgatcgctcctccctgcggaccctggggtcagtgggagagcccatcaactgtgaggcctgggagtggcttcacagggtggtgggggacagcaggtgcacgctggtggacacctggtggcagacagaaacaggtggcatctgcatcgcaccacggccctcggaagaaggggcggaaatcctccctgccatggcgatgaggcccttctttggcatcgtccccgtcctcatggatgagaagCCTTCTCTTGGAGTCAAGAAGCCTACCAAAGCCCTGCTCTTTGTACTCTTGAGCCCAGTGGGACCTTATTTTTCAAGTGGAACCTTTAATCCAGTGTCCCTGTGGGCCAATCCCAAGTATGTAAGAGCCTGGAAAGGTGGAACTGGGGACTGCAAGATGGGAGGGAATTACGGCTCATCTCTTTTTGCCCAATGTGAAGCAGTAGATAATGGGTGTCAGCAGGTCCTGTGGCTCTATGGAGAGGACCATCAGATCACTGAAGTGGGAACTATGAATCTTTTTCTTTACTGGATAAATGAAGATGGAGAAGAAGAACTGGCAACTCCTCCACTAGATGGCATCATTCTTCCAGGAGTGACAAGGCGGTGCATTCTGGACCTGGCACATCAGTGGGGTGAATTTAAGGTGTCAGAGAGATACCTCACCATGGATGACTTGACAACAGCCCTGGAGGGGAACAGAGTGAGAGAGATGTTTGGCTCTGGTACAGCCTGTGTTGTTTGCCCAGTTTCTGATATACTGTACAAAGGCGAGACAATACACATTCCAACTATGGAGAATGGTCCTAAGCTGGCAAGCCGCATCTTGAGCAAATTAACTGATATCCAGTATGGAAGAGAAGAGAGCGACTGGACAATTGTGCTATCCTGA MAARTLGRGVGRLLGSLRGLSGQPARPPCGVSAPRRAASGPSGSAPAVAAAAAQPGSYPALSAQAAREPAAFWGPLARDTLVWDTPYHTVWDCDFSTGKIGWFLGGQLNVSVNCLDQHVRKSPESVALIWERDEPGTEVRITYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVAAMLACARIGAVHTVIFAGFSAESLAGRINDAKCKVVITFNQGLRGGRVVELKKIVDEAVKHCPTVQHVLVAHRTDNKVHMGDLDVPLEQEMAKEDPVCAPESMGSEDMLFMLYTSGSTGMPKGIVHTQAGYLLYAALTHKLVFDHQPGDIFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNAGRYWETVERLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLGSVGEPINCEAWEWLHRVVGDSRCTLVDTWWQTETGGICIAPRPSEEGAEILPAMAMRPFFGIVPVLMDEKPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28762 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE FALSE TRUE 308 TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63588829:- chr15:63836446-63893788:- chr15:63881028:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27827738:+ chr7:27778950-27884183:+ chr7:27867357:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr7] 7 14 7 6.43 ONLY_REF_SPLICE YES_LDAS 0.1418 GT 1.7968 AG 1.5219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28767 USP3-AS1::TAX1BP1 ENSG00000259248.7::ENSG00000106052.14 KE39 SRR8615366 SRR8652074 STOMACH carcinoma metastasis star-fusion TRUE FALSE TRUE 309 TRUE 601 TRUE 212 USP3-AS1 ENSG00000259248.7 lncRNA - - chr15:63544247-63601589:- chr15:63594695:- chr15:63836446-63893788:- chr15:63886894:- TAX1BP1 ENSG00000106052.14 protein_coding + + chr7:27739331-27844564:+ chr7:27816349:+ chr7:27778950-27884183:+ chr7:27855968:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr7] 3 17 3 6.72 ONLY_REF_SPLICE YES_LDAS 0.1027 GT 1.9329 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28768 CDC6::ENSG00000234477 ENSG00000094804.12::ENSG00000234477.1 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 314 FALSE NA FALSE NA CDC6 ENSG00000094804.12 protein_coding + + chr17:40287879-40304657:+ chr17:40288090:+ chr17:38444131-38460909:+ chr17:38444342:+ ENSG00000234477 ENSG00000234477.1 lncRNA + + chr17:40921430-40975926:+ chr17:40975497:+ chr17:39077682-39132178:+ chr17:39131749:+ chr17:40288415,chr17:40288414 chr17:40949371,chr17:40949367 NA NA chr17:38444667,chr17:38444666 chr17:39105623,chr17:39105619 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC6:Oncogene"] 70 31 70 31 ONLY_REF_SPLICE YES_LDAS 1.2008 GT 1.6895 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28769 SLC30A7::LINC02664 ENSG00000162695.12::ENSG00000272381.2 PANC1005 SRR8615377 SRR8670730 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC30A7 ENSG00000162695.12 protein_coding + + chr1:100896076-100981757:+ chr1:100896671:+ chr1:101361632-101447313:+ chr1:101362227:+ LINC02664 ENSG00000272381.2 lncRNA + + chr10:31187715-31261910:+ chr10:31259982:+ chr10:31476644-31550839:+ chr10:31548911:+ chr1:100907732,chr1:100907730 chr10:31212683,chr10:31212678 NA NA chr1:101373288,chr1:101373286 chr10:31501612,chr10:31501607 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 13 19 11.76 ONLY_REF_SPLICE YES_LDAS 0.3657 GT 1.9899 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28770 RNASEH2A::GET3 ENSG00000104889.7::ENSG00000198356.12 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 315 FALSE NA FALSE NA RNASEH2A ENSG00000104889.7 protein_coding + + chr19:12806584-12813640:+ chr19:12807506:+ chr19:12917398-12924454:+ chr19:12918320:+ GET3 ENSG00000198356.12 protein_coding + + chr19:12737139-12748323:+ chr19:12745377:+ chr19:12847953-12859137:+ chr19:12856191:+ chr19:12807791 chr19:12743346 NA NA chr19:12918605 chr19:12854160 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RNase_HII|31-240|4.2e-53^CARD|70-142|3.4e-05^CARD|245-278|1.2 ArsA_ATPase-PARTIAL|~310-339|6.4e-131^AAA_31-PARTIAL|~310-312|1.1^ParA-PARTIAL|~310-332|0.031 none 377 228 377 228 ONLY_REF_SPLICE YES_LDAS 6.447 GT 1.9329 AG 1.9329 ENST00000221486.6 1-411 ENST00000357332.8 310-1047 chr19|+|[0]12806674-12806800[0]|[1]12807008-12807079[0]|[1]12807206-12807329[1]|[2]12807419-12807506[2]<==>chr19|+|[0]12745377-12745525[1]|[2]12745609-12745759[2]|[0]12747197-12747304[2]|[0]12747395-12747592[2]|[0]12747973-12748104[2] atggatctcagcgagctggagagagacaatacaggccgctgtcgcctgagttcgcctgtgcccgcggtgtgccgcaaggagccttgcgtcctgggcgtcgatgaggcgggcaggggccccgtgctgggccccatggtctacgccatctgttattgtcccctgcctcgcctggcagatctggaggcgctgaaagtggcagactcaaagaccctattggagagcgagcgggaaaggctgtttgcgaaaatggaggacacggactttgtcggctgggcgctggatgtgctgtctccaaacctcatctctaccagcatgcttgggcgggtcaaatacaacctgaactccctgtcacatgatacagccactgggcttatacagtatgcattggaccagggcgtgaacgtcacccagGAGATTGACCCCAGCCTGGGCGTGGCGGAGCTGCCTGACGAGTTCTTCGAGGAGGACAACATGCTGAGCATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCATTTCCCGGCATCGATGAGGCCATGAGCTATGCCGAGGTCATGAGGCTGGTGAAGGGCATGAACTTCTCGGTGGTGGTATTTGACACGGCACCCACGGGCCACACCCTGAGGCTGCTCAACTTCCCCACCATCGTGGAGCGGGGCCTGGGCCGGCTTATGCAGATCAAGAACCAGATCAGCCCTTTCATCTCACAGATGTGCAACATGCTGGGCCTGGGGGACATGAACGCAGACCAGCTGGCCTCCAAGCTGGAGGAGACGCTGCCCGTCATCCGCTCAGTCAGCGAACAGTTCAAGGACCCTGAGCAGACAACTTTCATCTGCGTATGCATTGCTGAGTTCCTGTCCCTGTATGAGACAGAGAGGCTGATCCAGGAGCTGGCCAAGTGCAAGATTGACACACACAATATAATTGTCAACCAGCTCGTCTTCCCCGACCCCGAGAAGCCCTGCAAGATGTGTGAGGCCCGTCACAAGATCCAGGCCAAGTATCTGGACCAGATGGAGGACCTGTATGAAGACTTCCACATCGTGAAGCTGCCGCTGTTACCCCATGAGGTGCGGGGGGCAGACAAGGTCAACACCTTCTCGGCCCTCCTCCTGGAGCCCTACAAGCCCCCCAGTGCCCAGTAG MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFPGIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGLGDMNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQELAKCKIDTHNIIVNQLVFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPHEVRGADKVNTFSALLLEPYKPPSAQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28771 CAPZB::TMCO4 ENSG00000077549.19::ENSG00000162542.14 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19419661:- chr1:19665269-19812033:- chr1:19746155:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19700885:- chr1:20008733-20126438:- chr1:20027378:- chr1:19388706,chr1:19388708,chr1:19388708 chr1:19725758,chr1:19725757,chr1:19725755 NA NA chr1:19715200,chr1:19715202,chr1:19715202 chr1:20052251,chr1:20052250,chr1:20052248 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.20Mb] 67 47 67 47 ONLY_REF_SPLICE YES_LDAS 1.2148 GT 1.9656 AG 1.9219 ENST00000674228.1 1-77 ENST00000294543.11 1265-1905 chr1|-|[0]19419661-19419737[2]<==>chr1|-|[2]19683040-19683444[0]|[2]19694434-19694551[2]|[1]19700768-19700885[1] tggactgtgccttggacctaatgaggcgcctgcctccccagcaaatcgagaaaaacctcagcgacctgatcgacctgATTGCCAAGGAATCATCGAGGACGTCATCCTGCTGGGTGCGCCTGTGGAGGGAGAAGCCAAGCATTGGGAGCCTTTCCGGAAGGTGGTGTCCGGGAGGATCATCAACGGCTACTGCAGGGGAGACTGGCTGCTGAGTTTCGTGTACCGCACATCCTCGGTGCAGCTCCGTGTCGCCGGCCTACAGCCCGTGCTGCTGCAGGACAGGAGGGTGGAGAACGTGGACCTGACCTCTGTGGTCAGCGGCCACCTGGACTATGCCAAGCAGATGGATGCCATCCTGAAGGCCGTGGGCATCCGCACCAAGCCAGGCTGGGACGAGAAGGGGCTCTTGCTGGCCCCAGGCTGCCTGCCCTCCGAGGAGCCTCGCCAGGCAGCAGCTGCCGCCTCATCAGGCGAGACCCCCCACCAGGTTGGGCAAACCCAGGGTCCCATATCCGGAGACACCTCCAAATTGGCCATGTCCACAGACCCCAGCCAAGCCCAGGTGCCAGTAGGGCTGGACCAGTCTGAAGGGGCCTCCCTTCCTGCTGCTGCCAGCCCTGAAAGGCCCCCCATCTGCAGCCATGGCATGGACCCCAACCCACTGGGCTGCCCCGATTGTGCCTGCAAGACCCAGGGCCCCAGCACGGGGCTGGACTGA GLCLGPNEAPASPANREKPQRPDRPDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAASPERPPICSHGMDPNPLGCPDCACKTQGPSTGLD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Stomach,Ovary no_match TRUE Uterine Carcinosarcoma UTERUS no_match 19811930|19810684 FALSE|FALSE 20027378|20027378 TRUE|TRUE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28773 VDAC2::SAMD8 ENSG00000165637.14::ENSG00000156671.15 GP2D SRR8615381 SRR8639178 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA VDAC2 ENSG00000165637.14 protein_coding + + chr10:75210154-75231448:+ chr10:75222402:+ chr10:76969912-76991206:+ chr10:76982160:+ SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75181939:+ chr10:76859344-76941881:+ chr10:76941697:+ chr10:75225107,chr10:75225108 chr10:75177343,chr10:75177341 NA NA chr10:76984865,chr10:76984866 chr10:76937101,chr10:76937099 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.03Mb];LOCAL_REARRANGEMENT:+:[28031] 14 3 14 3 INCL_NON_REF_SPLICE YES_LDAS 0.1812 GT 1.6895 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28777 PYGO1::ENSG00000259309 ENSG00000171016.13::ENSG00000259309.2 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PYGO1 ENSG00000171016.13 protein_coding - - chr15:55538884-55588947:- chr15:55587835:- chr15:55831082-55881145:- chr15:55880033:- ENSG00000259309 ENSG00000259309.2 lncRNA - - chr15:69820756-69835111:- chr15:69831642:- chr15:70113095-70127450:- chr15:70123981:- chr15:55549908 chr15:69832936 NA NA chr15:55842106 chr15:70125275 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 43 8 43 8 ONLY_REF_SPLICE YES_LDAS 0.5772 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28778 SIN3A::MAP3K5 ENSG00000169375.17::ENSG00000197442.11 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 319 FALSE NA FALSE NA SIN3A ENSG00000169375.17 protein_coding - - chr15:75369379-75455842:- chr15:75451423:- chr15:75661720-75748183:- chr15:75743764:- MAP3K5 ENSG00000197442.11 protein_coding - - chr6:136557046-136793097:- chr6:136567874:- chr6:136878184-137114235:- chr6:136889012:- chr15:75432638,chr15:75432990,chr15:75432992 chr6:136568499,chr6:136568499,chr6:136568498 NA NA chr15:75724979,chr15:75725331,chr15:75725333 chr6:136889637,chr6:136889637,chr6:136889636 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr6] 42 15 42 15 ONLY_REF_SPLICE YES_LDAS 0.6451 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 5 STE STE11 Q99683 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28779 RPTOR::EYA2 ENSG00000141564.16::ENSG00000064655.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 322 FALSE NA FALSE NA RPTOR ENSG00000141564.16 protein_coding + + chr17:80544819-80966371:+ chr17:80893865:+ chr17:78518619-78940171:+ chr17:78867665:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47001428:+ chr20:45523263-45817492:+ chr20:45630067:+ chr17:80906926 chr20:46990483 NA NA chr17:78880726 chr20:45619122 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Raptor_N|73-224|8.7e-78^TTI1|450-463|5.6^HEAT_2|460-474|3.8^HEAT_EZ|486-503|4.4^HEAT|490-505|1.1^HEAT|576-605|4.8e-07^HEAT_2|577-602|0.001^TTI1|579-606|0.28^HEAT_2|581-646|3.7e-08^PDS5|581-688|2.5e-05^Cnd1|582-643|0.00017^HEAT_EZ|582-602|0.019^Adaptin_N|584-690|0.0012^HEAT_EZ|618-643|0.0015^HEAT_2|621-687|6e-07^HEAT|622-645|1.8e-07^Cnd1|665-701|0.00079^HEAT|666-689|0.015^HEAT_EZ|666-688|0.27^TTI1|786-819|0.16^HEAT|832-856|0.019^HEAT_2|833-863|0.85^Cnd1|833-860|0.08^TTI1|833-858|0.0034^WD40|1047-1068|0.14^ANAPC4_WD40|1048-1092|4.4^WD40|1095-1114|0.00069^WD40|1154-1169|3^WD40_2|1157-1216|6.1e-05^ANAPC4_WD40|1160-1213|0.0048^WD40|1182-1212|6.4e-06^WD40|1222-1258|0.003^ANAPC4_WD40|1236-1270|0.24^WD40|1273-1293|0.095^ANAPC4_WD40|1281-1350|0.00051^WD40|1320-1346|0.003 Hydrolase|269-513|2.1e-16 ["RPTOR:FoundationOne_panel","RPTOR:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 41 8 41 8 ONLY_REF_SPLICE YES_LDAS 0.5545 GT 1.7465 AG 1.9086 ENST00000697423.1 1-2455 ENST00000327619.10 110-1617 chr17|+|[0]80545576-80545791[2]|[0]80625691-80625793[0]|[1]80643728-80643810[2]|[0]80707841-80707999[2]|[0]80730560-80730706[2]|[0]80754010-80754185[1]|[2]80791450-80791509[1]|[2]80822201-80822301[0]|[1]80823079-80823223[1]|[2]80837922-80837997[2]|[0]80846473-80846574[2]|[0]80855464-80855547[2]|[0]80857790-80857900[2]|[0]80880415-80880489[2]|[0]80883419-80883484[2]|[0]80883781-80883972[2]|[0]80885008-80885148[2]|[0]80891720-80891837[0]|[1]80892729-80892869[0]|[1]80893707-80893865[0]<==>chr20|+|[1]47001428-47001473[1]|[2]47004942-47005084[0]|[1]47016181-47016297[0]|[1]47072185-47072252[2]|[0]47074158-47074335[0]|[1]47089239-47089381[2]|[0]47097085-47097168[2]|[0]47143059-47143148[2]|[0]47169139-47169197[1]|[2]47172707-47172867[0]|[1]47179798-47179912[1]|[2]47180815-47180936[0]|[1]47183291-47183391[2]|[0]47188053-47188133[2] ctggaggttctcgagcgcttgctgccaaggactcccccaccccctcccccactgatggagtccgaaatgctgcaatcgcctcttctgggcctgggggaggaagatgaggctgatcttacagactggaacctacctttggcttttatgaaaaagaggcactgtgagaaaattgaaggctccaaatccttagctcagagctggaggatgaaggatcggatgaagacagtcagtgttgccttagttttgtgcctgaatgttggtgtggaccctcccgatgtggtgaagaccacgccctgtgcacgcttggaatgctggatcgatcctctgtcgatgggtcctcagaaagctctggaaaccatcggtgcaaatttacagaagcagtacgagaactggcagccaagggcccggtacaagcagagccttgacccaactgtggatgaagtcaagaagctctgcacgtccttacgtcgcaacgccaaggaggagcgagtcctctttcactacaatggccacggggtgccccggcccacagtcaacggggaggtctgggtcttcaacaagaactacacgcagtacatccctctgtccatatatgacctgcagacgtggatgggcagcccgtcgatcttcgtctacgactgctccaatgctggcttgatcgtcaagtccttcaagcagttcgcactacagcgggagcaggagctggaggtagctgcaatcaacccaaatcaccctcttgctcagatgcctttgcctccgtcgatgaaaaactgcatccagctggcagcctgcgaggccaccgagctgctgcccatgatccccgacctcccggctgacctattcacctcctgcctcaccacccccatcaagatcgccctgcgctggttttgcatgcagaaatgtgtcagtctggtgcctggcgtcacactggatttgatagaaaagatccctggccgcctgaacgacaggaggacgcccctgggtgaactgaactggatcttcacagccatcacagacaccatcgcgtggaacgtgctcccccgggatctcttccaaaagctcttcagacaggacttgctggtggctagtctgtttcgaaattttttattggcggaaaggattatgaggtcgtataactgcactcccgtcagcagcccgcgtctgccgcccacgtacatgcacgccatgtggcaagcctgggacctggctgttgacatctgtctgtctcagctgccgacgatcatcgaggaaggcactgcgtttcggcacagcccgttcttcgccgagcagctgaccgcattccaggtgtggctcaccatgggcgtggagaaccgaaacccacccgaacagctgcccatcgtcctgcaggtgctgttaagccaagtgcaccggctgagagcattggacttgcttggaagatttttggacctgggtccctgggcagtgagcctggccttgtctgtcggcatcttcccctacgtgctgaagctgctccagagctcggcccgagagctgcggccacttctcgttttcatctgggccaagatcctcgcagtggacagctcgtgccaagcggacctcgtgaaggacaacggccacaagtacttcctgtcggtcctggcggacccctacatgccagctgaacaccggaccatgacggctttcattctcgccgtgatcgtcaacagctatcacacggggcaggaagcctgccttcagggaaacctcattgccatctgcctggagcagctcaacgacccgcaccccttgctgcgccagtgggtggccatctgcctcggcaggatctggcagaacttcgactcggcgaggtggtgcggcgtgagggacagcgctcatgagaagctctacagcctcctctccgaccccattcccgaggtccgctgcgcagcggtcttcgcccttggcacgttcgtgggcaactctgcagagaggacggaccactccaccaccatcgaccacaacgtggccatgatgctggcccagctggtcagcgacgggagccccatggtccggaaggagctggtggtggctctgagtcatcttgtggttcagtatgaaagcaatttctgcaccgtggccctgcagttcatagaagaggaaaagaactacgccttgccttctccagcaaccacagagggagggagtttgaccccagtgcgagacagcccgtgcacccccagacttcgttctgtgagctcctatggaaacatccgtgctgtcgccacagccaggagcctcaacaaatctttgcagaacctgagtttgacagaggaatctggtggcgcggtggcgttctcccccggaaacctcagcaccagcagcagcgccagcagcaccctgggcagccccgagaatgaggagcatatcctgtccttcgagaccatcgacaagatgcgccgcgccagctcctactcctccctcaactccctcatcgGCATCACCAAATCGGCCCCCCTGAGAGTGTCCCAGCTCTTCTCCAGATCTTGCCCACGTGTCCTCCCCCGCCAGCCTTCCACAGCCATGGCAGCCTACGGCCAGACGCAGTACAGTGCGGGGATCCAGCAGGCTACCCCCTATACAGCTTACCCACCTCCAGCACAAGCCTATGGAATCCCTTCCTACAGCATCAAGACAGAAGACAGCTTGAACCATTCCCCTGGCCAGAGTGGATTCCTCAGCTATGGCTCCAGCTTCAGCACCTCACCCACTGGACAGAGCCCATACACCTACCAGATGCACGGCACAACAGGGTTCTATCAAGGAGGAAATGGACTGGGCAACGCAGCCGGTTTCGGGAGTGTGCACCAGGACTATCCTTCCTACCCCGGCTTCCCCCAGAGCCAGTACCCCCAGTATTACGGCTCATCCTACAACCCTCCCTACGTCCCGGCCAGCAGCATCTGCCCTTCGCCCCTCTCCACGTCCACCTACGTCCTCCAGGAGGCATCTCACAACGTCCCCAACCAGAGTTCCGAGTCACTTGCTGGTGAATACAACACACACAATGGACCTTCCACACCAGCGAAAGAGGGAGACACAGACAGGCCGCACCGGGCCTCCGACGGGAAGCTCCGAGGCCGGTCTAAGAGGAGCAGTGACCCGTCCCCGGCAGGGGACAATGAGATTGAGCGTGTGTTCGTGTGGGACTTGGATGAGACAATAATTATTTTTCACTCCTTACTCACGGGGACATTTGCATCCAGATACGGGAAGGACACCACGACGTCCGTGCGCATTGGCCTTATGATGGAAGAGATGATCTTCAACCTTGCAGATACACATCTGTTCTTCAATGACCTGGAGGATTGTGACCAGATCCACGTTGATGACGTCTCATCAGATGACAATGGCCAAGATTTAAGCACATACAACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGGGTGAAGGAGATGTACAATACCTACAAGAACAACGTTGGTGGGTTGATAGGCACTCCCAAAAGGGAGACCTGGCTACAGCTCCGAGCTGAGCTGGAAGCTCTCACAGACCTCTGGCTGACCCACTCCCTGAAGGCACTAAACCTCATCAACTCCCGGCCCAACTGTGTCAATGTGCTGGTCACCACCACTCAACTAATTCCTGCCCTGGCCAAAGTCCTGCTATATGGCCTGGGGTCTGTGTTTCCTATTGAGAACATCTACAGTGCAACCAAGACAGGGAAGGAGAGCTGCTTCGAGAGGATAATGCAGAGATTCGGCAGAAAAGCTGTCTACGTGGTGATCGGTGATGGTGTGGAAGAGGAGCAAGGAGCGAAAAAGCACAACATGCCTTTCTGGCGGATATCCTGCCACGCAGACCTGGAGGCACTGAGGCACGCCCTGGAGCTGGAGTATTTATAG LEVLERLLPRTPPPPPPLMESEMLQSPLLGLGEEDEADLTDWNLPLAFMKKRHCEKIEGSKSLAQSWRMKDRMKTVSVALVLCLNVGVDPPDVVKTTPCARLECWIDPLSMGPQKALETIGANLQKQYENWQPRARYKQSLDPTVDEVKKLCTSLRRNAKEERVLFHYNGHGVPRPTVNGEVWVFNKNYTQYIPLSIYDLQTWMGSPSIFVYDCSNAGLIVKSFKQFALQREQELEVAAINPNHPLAQMPLPPSMKNCIQLAACEATELLPMIPDLPADLFTSCLTTPIKIALRWFCMQKCVSLVPGVTLDLIEKIPGRLNDRRTPLGELNWIFTAITDTIAWNVLPRDLFQKLFRQDLLVASLFRNFLLAERIMRSYNCTPVSSPRLPPTYMHAMWQAWDLAVDICLSQLPTIIEEGTAFRHSPFFAEQLTAFQVWLTMGVENRNPPEQLPIVLQVLLSQVHRLRALDLLGRFLDLGPWAVSLALSVGIFPYVLKLLQSSARELRPLLVFIWAKILAVDSSCQADLVKDNGHKYFLSVLADPYMPAEHRTMTAFILAVIVNSYHTGQEACLQGNLIAICLEQLNDPHPLLRQWVAICLGRIWQNFDSARWCGVRDSAHEKLYSLLSDPIPEVRCAAVFALGTFVGNSAERTDHSTTIDHNVAMMLAQLVSDGSPMVRKELVVALSHLVVQYESNFCTVALQFIEEEKNYALPSPATTEGGSLTPVRDSPCTPRLRSVSSYGNIRAVATARSLNKSLQNLSLTEESGGAVAFSPGNLSTSSSASSTLGSPENEEHILSFETIDKMRRASSYSSLNSLIGITKSAPLRVSQLFSRSCPRVLPRQPSTAMAAYGQTQYSAGIQQATPYTAYPPPAQAYGIPSYSIKTEDSLNHSPGQSGFLSYGSSFSTSPTGQSPYTYQMHGTTGFYQGGNGLGNAAGFGSVHQDYPSYPGFPQSQYPQYYGSSYNPPYVPASSICPSPLSTSTYVLQEASHNVPNQSSESLAGEYNTHNGPSTPAKEGDTDRPHRASDGKLRGRSKRSSDPSPAGDNEIERVFVWDLDETIIIFHSLLTGTFASRYGKDTTTSVRIGLMMEEMIFNLADTHLFFNDLEDCDQIHVDDVSSDDNGQDLSTYNFSADGFHSSAPGANLCLGSGVHGGVDWMRKLAFRYRRVKEMYNTYKNNVGGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL* FALSE FALSE NA NA TRUE hsa-mir-3616 chr20:47166967-47167058:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28781 TXNRD1::CIT ENSG00000198431.18::ENSG00000122966.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104289040:+ chr12:104609557-104744085:+ chr12:104682818:+ CIT ENSG00000122966.18 protein_coding - - chr12:119685791-119877320:- chr12:119834228:- chr12:120123596-120315124:- chr12:120272032:- chr12:104310283 chr12:119846212 NA NA chr12:104704061 chr12:120284016 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DAO|31-79|1.3^Glutaredoxin|68-128|9.5e-10^NAD_binding_8|123-137|7.1^Thi4|155-210|1.4e-06^Pyr_redox_2-PARTIAL|163-414~|9.8e-58^FAD_binding_3|163-192|1.4e-05^FAD_binding_2|164-209|2.6e-09^HI0933_like|164-192|2.3e-07^FAD_oxidored|164-192|1.2e-07^DAO|164-267|3.7e-07^GIDA|164-216|3e-06^Lycopene_cycl|164-192|0.00023^Pyr_redox|165-192|0.00048^AlaDh_PNT_C|165-194|8.3e-06^NAD_binding_7|165-191|0.09^Pyr_redox_3|166-192|6.9e-05^NAD_binding_8|167-192|9.3e-07^Lycopene_cycl|236-252|3.8^Pyr_redox_3-PARTIAL|298-414~|1.5e-13^Glutaredoxin|333-340|9.1^AlaDh_PNT_C|340-369|0.0099^Pyr_redox|342-412|1.2e-20^NAD_binding_7|342-381|0.014^Thi4|343-373|0.72^FAD_binding_3|343-369|0.57^DAO|344-369|2.4^NAD_binding_8|345-368|1.4^HI0933_like-PARTIAL|404-414~|0.8 Pkinase|694-743|1.2^APH|695-712|3.6^APH|909-972|1.8^CNH|954-1014|3.4^CNH|1101-1151|1.6^APH|1156-1156|8^APH|1274-1324|6.3^C1_1|1405-1454|8.8e-09^PH|1487-1604|9.7e-13^CNH|1644-1897|4.3e-66 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:15.34Mb] 33 7 33 7 ONLY_REF_SPLICE YES_LDAS 0.4527 GT 1.9899 AG 1.9329 ENST00000525566.6 1-414 ENST00000392521.7 517-6210 chr12|+|[0]104215803-104215893[0]|[1]104251527-104251678[2]|[0]104258019-104258079[0]|[1]104288931-104289040[2]<==>chr12|-|[2]119688232-119688255[0]|[2]119690151-119690454[2]|[1]119697659-119697838[2]|[1]119697976-119698054[1]|[0]119700745-119700825[1]|[0]119701624-119701752[1]|[0]119701850-119701958[0]|[2]119704363-119704455[0]|[2]119708179-119708318[1]|[0]119710251-119710386[0]|[2]119710540-119710620[0]|[2]119712178-119712347[1]|[0]119712591-119712695[1]|[0]119713203-119713294[2]|[1]119713468-119713648[1]|[0]119714197-119714334[1]|[0]119718245-119718409[1]|[0]119718699-119718861[0]|[2]119720478-119720585[0]|[2]119721309-119721449[0]|[2]119728502-119728606[0]|[2]119730495-119730630[2]|[1]119734164-119734357[0]|[2]119735160-119735357[0]|[2]119742411-119742464[0]|[2]119752050-119752247[0]|[2]119757371-119757545[2]|[1]119758591-119758700[0]|[2]119760939-119761055[0]|[2]119767087-119767182[0]|[2]119770785-119770910[0]|[2]119772770-119772910[0]|[2]119775786-119775839[0]|[2]119776358-119776408[0]|[2]119776672-119776842[0]|[2]119782518-119782637[0]|[2]119783908-119784051[0]|[2]119784960-119785065[2]|[1]119803206-119803389[1]|[0]119822820-119822973[0]|[2]119825165-119825368[0]|[2]119832771-119832864[2]|[1]119834086-119834228[0] atgggctgcgccgagggcaaggcagtggcggcggccgccccaacggagctgcagacgaaaggcaagaacggcgatggccgccgtaggtcagctaaagatcatcaccctggtaaaactttgccagagaacccagcaggattcaccagcacggccactgcagactccagagccctgcttcaggcctatatagatggtcactctgtggtcatcttcagtaggtccacatgcacacgctgtactgaggtaaagaagttatttaaatctctgtgtgttccttattttgtgcttgaacttgatcaaacagaggacggtcgggccctggaaggaacgctctcggaattggccgcggaaaccgatctgcccgttgtgtttgtgaaacagagaaagataggcggccatggtccaaccttgaagGTCATGGAATATCAGCCTGGAGGGGACTTGCTGTCACTTTTGAATAGATATGAGGACCAGTTAGATGAAAACCTGATACAGTTTTACCTAGCTGAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCGAGACATCAAGCCTGAGAACATTCTCGTTGACCGCACAGGACACATCAAGCTGGTGGATTTTGGATCTGCCGCGAAAATGAATTCAAACAAGATGGTGAATGCCAAACTCCCGATTGGGACCCCAGATTACATGGCTCCTGAAGTGCTGACTGTGATGAACGGGGATGGAAAAGGCACCTACGGCCTGGACTGTGACTGGTGGTCAGTGGGCGTGATTGCCTATGAGATGATTTATGGGAGATCCCCCTTCGCAGAGGGAACCTCTGCCAGAACCTTCAATAACATTATGAATTTCCAGCGGTTTTTGAAATTTCCAGATGACCCCAAAGTGAGCAGTGACTTTCTTGATCTGATTCAAAGCTTGTTGTGCGGCCAGAAAGAGAGACTGAAGTTTGAAGGTCTTTGCTGCCATCCTTTCTTCTCTAAAATTGACTGGAACAACATTCGTAACTCTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGACGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAGCCCCTCAGGCTTCTCGGGTGAAGAACTGCCGTTTGTGGGGTTTTCGTACAGCAAGGCACTGGGGATTCTTGGTAGATCTGAGTCTGTTGTGTCGGGTCTGGACTCCCCTGCCAAGACTAGCTCCATGGAAAAGAAACTTCTCATCAAAAGCAAAGAGCTACAAGACTCTCAGGACAAGTGTCACAAGATGGAGCAGGAAATGACCCGGTTACATCGGAGAGTGTCAGAGGTGGAGGCTGTGCTTAGTCAGAAGGAGGTGGAGCTGAAGGCCTCTGAGACTCAGAGATCCCTCCTGGAGCAGGACCTTGCTACCTACATCACAGAATGCAGTAGCTTAAAGCGAAGTTTGGAGCAAGCACGGATGGAGGTGTCCCAGGAGGATGACAAAGCACTGCAGCTTCTCCATGATATCAGAGAGCAGAGCCGGAAGCTCCAAGAAATCAAAGAGCAGGAGTACCAGGCTCAAGTGGAAGAAATGAGGTTGATGATGAATCAGTTGGAAGAGGATCTTGTCTCAGCAAGAAGACGGAGTGATCTCTACGAATCTGAGCTGAGAGAGTCTCGGCTTGCTGCTGAAGAATTCAAGCGGAAAGCGACAGAATGTCAGCATAAACTGTTGAAGGCTAAGGATCAAGGGAAGCCTGAAGTGGGAGAATATGCGAAACTGGAGAAGATCAATGCTGAGCAGCAGCTCAAAATTCAGGAGCTCCAAGAGAAACTGGAGAAGGCTGTAAAAGCCAGCACGGAGGCCACCGAGCTGCTGCAGAATATCCGCCAGGCAAAGGAGCGAGCCGAGAGGGAGCTGGAGAAGCTGCAGAACCGAGAGGATTCTTCTGAAGGCATCAGAAAGAAGCTGGTGGAAGCTGAGGAACGCCGCCATTCTCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAATCCCAACAGATCCAGCAGATGGCTGATAAAATTCTGGAGCTCGAAGAGAAACATCGGGAGGCCCAAGTCTCAGCCCAGCACCTAGAAGTGCACCTGAAACAGAAAGAGCAGCACTATGAGGAAAAGATTAAAGTGTTGGACAATCAGATAAAGAAAGACCTGGCTGACAAGGAGACACTGGAGAACATGATGCAGAGACACGAGGAGGAGGCCCATGAGAAGGGCAAAATTCTCAGCGAACAGAAGGCGATGATCAATGCTATGGATTCCAAGATCAGATCCCTGGAACAGAGGATTGTGGAACTGTCTGAAGCCAATAAACTTGCAGCAAATAGCAGTCTTTTTACCCAAAGGAACATGAAGGCCCAAGAAGAGATGATTTCTGAACTCAGGCAACAGAAATTTTACCTGGAGACACAGGCTGGGAAGTTGGAGGCCCAGAACCGAAAACTGGAGGAGCAGCTGGAGAAGATCAGCCACCAAGACCACAGTGACAAGAATCGGCTGCTGGAACTGGAGACAAGATTGCGGGAGGTCAGTCTAGAGCACGAGGAGCAGAAACTGGAGCTCAAGCGCCAGCTCACAGAGCTACAGCTCTCCCTGCAGGAGCGCGAGTCACAGTTGACAGCCCTGCAGGCTGCACGGGCGGCCCTGGAGAGCCAGCTTCGCCAGGCGAAGACAGAGCTGGAAGAGACCACAGCAGAAGCTGAAGAGGAGATCCAGGCACTCACGGCACATAGAGATGAAATCCAGCGCAAATTTGATGCTCTTCGTAACAGCTGTACTGTAATCACAGACCTGGAGGAGCAGCTAAACCAGCTGACCGAGGACAACGCTGAACTCAACAACCAAAACTTCTACTTGTCCAAACAACTCGATGAGGCTTCTGGCGCCAACGACGAGATTGTACAACTGCGAAGTGAAGTGGACCATCTCCGCCGGGAGATCACGGAACGAGAGATGCAGCTTACCAGCCAGAAGCAAACGATGGAGGCTCTGAAGACCACGTGCACCATGCTGGAGGAACAGGTCATGGATTTGGAGGCCCTAAACGATGAGCTGCTAGAAAAAGAGCGGCAGTGGGAGGCCTGGAGGAGCGTCCTGGGTGATGAGAAATCCCAGTTTGAGTGTCGGGTTCGAGAGCTGCAGAGAATGCTGGACACCGAGAAACAGAGCAGGGCGAGAGCCGATCAGCGGATCACCGAGTCTCGCCAGGTGGTGGAGCTGGCAGTGAAGGAGCACAAGGCTGAGATTCTCGCTCTGCAGCAGGCTCTCAAAGAGCAGAAGCTGAAGGCCGAGAGCCTCTCTGACAAGCTCAATGACCTGGAGAAGAAGCATGCTATGCTTGAAATGAATGCCCGAAGCTTACAGCAGAAGCTGGAGACTGAACGAGAGCTCAAACAGAGGCTTCTGGAAGAGCAAGCCAAATTACAGCAGCAGATGGACCTGCAGAAAAATCACATTTTCCGTCTGACTCAAGGACTGCAAGAAGCTCTAGATCGGGCTGATCTACTGAAGACAGAAAGAAGTGACTTGGAGTATCAGCTGGAAAACATTCAGGTTCTCTATTCTCATGAAAAGGTGAAAATGGAAGGCACTATTTCTCAACAAACCAAACTCATTGATTTTCTGCAAGCCAAAATGGACCAACCTGCTAAAAAGAAAAAGGGTTTATTTAGTCGACGGAAAGAGGACCCTGCTTTACCCACACAGGTTCCTCTGCAGTACAATGAGCTGAAGCTGGCCCTGGAGAAGGAGAAAGCTCGCTGTGCAGAGCTAGAGGAAGCCCTTCAGAAGACCCGCATCGAGCTCCGGTCCGCCCGGGAGGAAGCTGCCCACCGCAAAGCAACGGACCACCCACACCCATCCACGCCAGCCACCGCGAGGCAGCAGATCGCCATGTCCGCCATCGTGCGGTCGCCAGAGCACCAGCCCAGTGCCATGAGCCTGCTGGCCCCGCCATCCAGCCGCAGAAAGGAGTCTTCAACTCCAGAGGAATTTAGTCGGCGTCTTAAGGAACGCATGCACCACAATATTCCTCACCGATTCAACGTAGGACTGAACATGCGAGCCACAAAGTGTGCTGTGTGTCTGGATACCGTGCACTTTGGACGCCAGGCATCCAAATGTCTCGAATGTCAGGTGATGTGTCACCCCAAGTGCTCCACGTGCTTGCCAGCCACCTGCGGCTTGCCTGCTGAATATGCCACACACTTCACCGAGGCCTTCTGCCGTGACAAAATGAACTCCCCAGGTCTCCAGACCAAGGAGCCCAGCAGCAGCTTGCACCTGGAAGGGTGGATGAAGGTGCCCAGGAATAACAAACGAGGACAGCAAGGCTGGGACAGGAAGTACATTGTCCTGGAGGGATCAAAAGTCCTCATTTATGACAATGAAGCCAGAGAAGCTGGACAGAGGCCGGTGGAAGAATTTGAGCTGTGCCTTCCCGACGGGGATGTATCTATTCATGGTGCCGTTGGTGCTTCCGAACTCGCAAATACAGCCAAAGCAGATGTCCCATACATACTGAAGATGGAATCTCACCCGCACACCACCTGCTGGCCCGGGAGAACCCTCTACTTGCTAGCTCCCAGCTTCCCTGACAAACAGCGCTGGGTCACCGCCTTAGAATCAGTTGTCGCAGGTGGGAGAGTTTCTAGGGAAAAAGCAGAAGCTGATGCTAAACTGCTTGGAAACTCCCTGCTGAAACTGGAAGGTGATGACCGTCTAGACATGAACTGCACGCTGCCCTTCAGTGACCAGGTGGTGTTGGTGGGCACCGAGGAAGGGCTCTACGCCCTGAATGTCTTGAAAAACTCCCTAACCCATGTCCCAGGAATTGGAGCAGTCTTCCAAATTTATATTATCAAGGACCTGGAGAAGCTACTCATGATAGCAGGAGAAGAGCGGGCACTGTGTCTTGTGGACGTGAAGAAAGTGAAACAGTCCCTGGCCCAGTCCCACCTGCCTGCCCAGCCCGACATCTCACCCAACATTTTTGAAGCTGTCAAGGGCTGCCACTTGTTTGGGGCAGGCAAGATTGAGAACGGGCTCTGCATCTGTGCAGCCATGCCCAGCAAAGTCGTCATTCTCCGCTACAACGAAAACCTCAGCAAATACTGCATCCGGAAAGAGATAGAGACCTCAGAGCCCTGCAGCTGTATCCACTTCACCAATTACAGTATCCTCATTGGAACCAATAAATTCTACGAAATCGACATGAAGCAGTACACGCTCGAGGAATTCCTGGATAAGAATGACCATTCCTTGGCACCTGCTGTGTTTGCCGCCTCTTCCAACAGCTTCCCTGTCTCAATCGTGCAGGTGAACAGCGCAGGGCAGCGAGAGGAGTACTTGCTGTGTTTCCACGAATTTGGAGTGTTCGTGGATTCTTACGGAAGACGTAGCCGCACAGACGATCTCAAGTGGAGTCGCTTACCTTTGGCCTTTGCCTACAGAGAACCCTATCTGTTTGTGACCCACTTCAACTCACTCGAAGTAATTGAGATCCAGGCACGCTCCTCAGCAGGGACCCCTGCCCGAGCGTACCTGGACATCCCGAACCCGCGCTACCTGGGCCCTGCCATTTCCTCAGGAGCGATTTACTTGGCGTCCTCATACCAGGATAAATTAAGGGTCATTTGCTGCAAGGGAAACCTCGTGAAGGAGTCCGGCACTGAACACCACCGGGGCCCGTCCACCTCCCGCAGCAGCCCCAACAAGCGAGGCCCACCCACGTACAACGAGCACATCACCAAGCGCGTGGCCTCCAGCCCAGCGCCGCCCGAAGGCCCCAGCCACCCGCGAGAGCCAAGCACACCCCACCGCTACCGCGAGGGGCGGACCGAGCTGCGCAGGGACAAGTCTCCTGGCCGCCCCCTGGAGCGAGAGAAGTCCCCCGGCCGGATGCTCAGCACGCGGAGAGAGCGGTCCCCCGGGAGGCTGTTTGAAGACAGCAGCAGGGGCCGGCTGCCTGCGGGAGCCGTGAGGACCCCGCTGTCCCAGGTGAACAAGGTCTGGGACCAGTCTTCAGTATAA MGCAEGKAVAAAAPTELQTKGKNGDGRRRSAKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKVMEYQPGGDLLSLLNRYEDQLDENLIQFYLAELILAVHSVHLMGYVHRDIKPENILVDRTGHIKLVDFGSAAKMNSNKMVNAKLPIGTPDYMAPEVLTVMNGDGKGTYGLDCDWWSVGVIAYEMIYGRSPFAEGTSARTFNNIMNFQRFLKFPDDPKVSSDFLDLIQSLLCGQKERLKFEGLCCHPFFSKIDWNNIRNSPPPFVPTLKSDDDTSNFDEPEKNSWVSSSPCQLSPSGFSGEELPFVGFSYSKALGILGRSESVVSGLDSPAKTSSMEKKLLIKSKELQDSQDKCHKMEQEMTRLHRRVSEVEAVLSQKEVELKASETQRSLLEQDLATYITECSSLKRSLEQARMEVSQEDDKALQLLHDIREQSRKLQEIKEQEYQAQVEEMRLMMNQLEEDLVSARRRSDLYESELRESRLAAEEFKRKATECQHKLLKAKDQGKPEVGEYAKLEKINAEQQLKIQELQEKLEKAVKASTEATELLQNIRQAKERAERELEKLQNREDSSEGIRKKLVEAEERRHSLENKVKRLETMERRENRLKDDIQTKSQQIQQMADKILELEEKHREAQVSAQHLEVHLKQKEQHYEEKIKVLDNQIKKDLADKETLENMMQRHEEEAHEKGKILSEQKAMINAMDSKIRSLEQRIVELSEANKLAANSSLFTQRNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHSDKNRLLELETRLREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAARAALESQLRQAKTELEETTAEAEEEIQALTAHRDEIQRKFDALRNSCTVITDLEEQLNQLTEDNAELNNQNFYLSKQLDEASGANDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTTCTMLEEQVMDLEALNDELLEKERQWEAWRSVLGDEKSQFECRVRELQRMLDTEKQSRARADQRITESRQVVELAVKEHKAEILALQQALKEQKLKAESLSDKLNDLEKKHAMLEMNARSLQQKLETERELKQRLLEEQAKLQQQMDLQKNHIFRLTQGLQEALDRADLLKTERSDLEYQLENIQVLYSHEKVKMEGTISQQTKLIDFLQAKMDQPAKKKKGLFSRRKEDPALPTQVPLQYNELKLALEKEKARCAELEEALQKTRIELRSAREEAAHRKATDHPHPSTPATARQQIAMSAIVRSPEHQPSAMSLLAPPSSRRKESSTPEEFSRRLKERMHHNIPHRFNVGLNMRATKCAVCLDTVHFGRQASKCLECQVMCHPKCSTCLPATCGLPAEYATHFTEAFCRDKMNSPGLQTKEPSSSLHLEGWMKVPRNNKRGQQGWDRKYIVLEGSKVLIYDNEAREAGQRPVEEFELCLPDGDVSIHGAVGASELANTAKADVPYILKMESHPHTTCWPGRTLYLLAPSFPDKQRWVTALESVVAGGRVSREKAEADAKLLGNSLLKLEGDDRLDMNCTLPFSDQVVLVGTEEGLYALNVLKNSLTHVPGIGAVFQIYIIKDLEKLLMIAGEERALCLVDVKKVKQSLAQSHLPAQPDISPNIFEAVKGCHLFGAGKIENGLCICAAMPSKVVILRYNENLSKYCIRKEIETSEPCSCIHFTNYSILIGTNKFYEIDMKQYTLEEFLDKNDHSLAPAVFAASSNSFPVSIVQVNSAGQREEYLLCFHEFGVFVDSYGRRSRTDDLKWSRLPLAFAYREPYLFVTHFNSLEVIEIQARSSAGTPARAYLDIPNPRYLGPAISSGAIYLASSYQDKLRVICCKGNLVKESGTEHHRGPSTSRSSPNKRGPPTYNEHITKRVASSPAPPEGPSHPREPSTPHRYREGRTELRRDKSPGRPLEREKSPGRMLSTRRERSPGRLFEDSSRGRLPAGAVRTPLSQVNKVWDQSSV* FALSE FALSE NA NA TRUE hsa-mir-1178 chr12:119713634-119713724:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Citron Rho-interacting kinase AGC DMPK O14578 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28783 AIDA::FGGY ENSG00000186063.13::ENSG00000172456.18 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 321 FALSE NA FALSE NA AIDA ENSG00000186063.13 protein_coding - - chr1:222668013-222713210:- chr1:222693789:- chr1:222841355-222886552:- chr1:222867131:- FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59456961:+ chr1:59762310-60276319:+ chr1:59922633:+ chr1:222688393,chr1:222688407 chr1:59446660,chr1:59446646 NA NA chr1:222861735,chr1:222861749 chr1:59912332,chr1:59912318 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Aida_N|9-112|7.4e-46^Aida_C2-PARTIAL|157-289~|3.2e-68 none ["DepMap2023"];INTRACHROMOSOMAL[chr1:162.90Mb] 24 17 23.31 13.41 ONLY_REF_SPLICE YES_LDAS 0.4156 GT 1.6729 AG 1.4295 ENST00000340020.11 1-289 ENST00000424725.2 314-387 chr1|-|[0]222693789-222693843[0]|[2]222694210-222694263[0]|[2]222703148-222703217[2]|[1]222712208-222712317[0]<==>chr1|+|[1]59456961-59457034[2] atgtcggaggtgacccggagtctgctgcagcgctggggcgccagttttaggagaggcgccgacttcgactcttggggccagctggtggaggcgatagacgagtatcagatattagcaagacatctacaaaaggaggcccaagctcaacacaataattctgaattcacagaagaacaaaagaaaaccataggcaaaattgcaacatgcttggaattgcgaagtgcagctttacagtccacacagtctcaagaagaatttaaactggaggacctgaagaagctagaaccaaGTCTCTCTGCTCCCTGGTGTGTAAGTGGACATATTCAGCAGAGAAAGGCTGGGACGACAGTTTCTGGAAAATGA MSEVTRSLLQRWGASFRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKLEDLKKLEPSLSAPWCVSGHIQQRKAGTTVSGK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28787 GOLM2::LINGO1 ENSG00000166734.20::ENSG00000169783.13 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44380976:+ chr15:44580917-44707956:+ chr15:44673174:+ LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77735053:- chr15:77905369-78113242:- chr15:78027395:- chr15:44389901,chr15:44389902 chr15:77760531,chr15:77760530 NA NA chr15:44682099,chr15:44682100 chr15:78052873,chr15:78052872 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 4 17 4 ONLY_REF_SPLICE YES_LDAS 0.2377 GT 1.5546 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28788 LACTB::NEDD4 ENSG00000103642.12::ENSG00000069869.17 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 323 FALSE NA FALSE NA LACTB ENSG00000103642.12 protein_coding + + chr15:63121833-63142061:+ chr15:63129650:+ chr15:63414032-63434260:+ chr15:63421849:+ NEDD4 ENSG00000069869.17 protein_coding - - chr15:55826922-55993660:- chr15:55951589:- chr15:56119120-56285858:- chr15:56243787:- chr15:63132778,chr15:63132778 chr15:55956317,chr15:55956323 NA NA chr15:63424977,chr15:63424977 chr15:56248515,chr15:56248521 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Beta-lactamase|117-233|1.5e-32^Beta-lactamase2|152-190|1.3e-05^Bac_transf|239-278|7.1e-05^Beta-lactamase|302-365|3.2e-13 WW|168-174|2.1^WW|193-222|3.8e-15^WW|350-379|1.4e-15^WW|423-452|7e-16^WW|475-504|1.4e-15^HECT|595-897|5.4e-109 ["LACTB:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:7.13Mb] 16 5 16 5 ONLY_REF_SPLICE YES_LDAS 0.2377 GT 1.8295 AG 1.9656 ENST00000413507.3 1-1118 ENST00000435532.8 120-2703 chr15|+|[0]63121872-63122228[2]|[0]63122636-63122702[0]|[1]63126859-63127049[2]|[0]63127353-63127689[0]|[1]63129485-63129650[1]<==>chr15|-|[2]55829897-55829999[2]|[1]55830514-55830586[1]|[0]55833008-55833104[0]|[2]55834038-55834145[0]|[2]55834227-55834286[0]|[2]55837789-55837849[2]|[1]55838107-55838180[0]|[2]55838509-55838604[0]|[2]55840447-55840517[1]|[0]55840606-55840727[2]|[1]55841934-55842163[0]|[2]55846969-55847034[0]|[2]55848372-55848430[1]|[0]55848521-55848575[0]|[2]55848806-55848886[0]|[2]55850542-55850742[0]|[2]55852424-55852543[0]|[2]55856131-55856196[0]|[2]55860407-55860574[0]|[2]55860661-55860778[2]|[1]55862913-55863079[0]|[2]55869579-55869681[2]|[1]55872415-55872476[0]|[2]55873958-55874008[0]|[2]55924646-55924699[0]|[2]55951376-55951414[0]|[2]55951511-55951589[2] atgtaccggctcatgtcagcagtgactgcccgggctgccgcccccgggggcttggcctcaagctgcggacgacgcggggtccatcagcgcgccgggctgccgcctctcggccacggctgggtcgggggcctcgggctggggctggggctggcgctcggggtgaagctggcaggtgggctgaggggcgcggccccggcgcagtcccccgcggcccccgaccctgaggcgtcgcctctggccgagccgccacaggagcagtccctcgccccgtggtctccgcagaccccggcgccgccctgctccaggtgcttcgccagagccatcgagagcagccgcgacctgctgcacaggatcaaggatgaggtgggcgcaccgggcatagtggttggagtttctgtagatggaaaagaagtctggtcagaaggtttaggttatgctgatgttgagaaccgtgtaccatgtaaaccagagacagttatgcgaattgctagcatcagcaaaagtctcaccatggttgctcttgccaaattgtgggaagcagggaaactggatcttgatattccagtacaacattatgttcccgaattcccagaaaaagaatatgaaggtgaaaaggtttctgtcacaacaagattactgatttcccatttaagtggaattcgtcattatgaaaaggacataaaaaaggtgaaagaagagaaagcttataaagccttgaagatgatgaaagagaatgttgcatttgagcaagaaaaagaaggcaaaagtaatgaaaagaatgattttactaaatttaaaacagagcaggagaatgaagccaaatgccggaattcaaaacctggcaagaaaaagaatgattttgaacaaggcgaattatatttgagagaaaagtttgaaaattcaattgaatccctaagattatttaaaaatgatcctttgttcttcaaacctggtagtcagtttttgtattcaacttttggctataccctactggcagccatagtagagagagcttcaggatgtaaatatttggactatatgcagaaaatattccatgacttggatatgctgacgactgtgcaggaagaaaacgagccagtgatttacaatagagcaagTGATCCTTACGTGAGAGTGACGTTATATGACCCAATGAATGGAGTTCTTACAAGTGTGCAAACAAAAACCATTAAAAAGAGTTTGAATCCAAAGTGGAATGAAGAAATATTATTCAGAGTTCATCCTCAGCAGCACCGGCTTCTTTTTGAAGTGTTTGACGAAAACCGATTGACAAGAGATGATTTCCTAGGTCAAGTGGATGTTCCACTTTATCCATTACCGACAGAAAATCCAAGATTGGAGAGACCATATACATTTAAGGATTTTGTTCTTCATCCAAGAAGTCACAAATCAAGAGTTAAAGGTTATCTGAGACTAAAAATGACTTATTTACCTAAAACCAGTGGCTCAGAAGATGATAATGCAGAACAGGCTGAGGAATTAGAGCCTGGCTGGGTTGTTTTGGACCAACCAGATGCTGCTTGCCATTTGCAGCAACAACAAGAACCTTCTCCTCTACCTCCAGGGTGGGAAGAGAGGCAGGATATCCTTGGAAGGACCTATTATGTAAACCATGAATCTAGAAGAACACAGTGGAAAAGACCAACCCCTCAGGACAACCTAACAGATGCTGAGAATGGCAACATTCAACTGCAAGCACAACGTGCATTTACCACCAGGCGGCAGATATCCGAGGAAACAGAAAGTGTTGACAACCGAGAGTCTTCCGAGAACTGGGAAATTATAAGAGAAGATGAAGCCACCATGTATAGCAACCAGGCCTTCCCATCACCTCCACCGTCAAGTAACTTGGATGTTCCAACTCATCTTGCAGAAGAATTGAATGCCAGACTCACCATTTTTGGAAATTCAGCCGTGAGCCAGCCAGCATCGAGCTCAAATCATTCCAGCAGAAGAGGCAGCTTACAAGCCTATACTTTTGAGGAACAACCTACACTTCCTGTGCTTTTGCCTACTTCATCTGGATTACCACCAGGTTGGGAAGAAAAACAAGATGAAAGAGGAAGATCATATTATGTAGATCACAATTCCAGAACGACTACTTGGACAAAGCCCACTGTACAGGCCACAGTGGAGACCAGTCAGCTGACCTCAAGCCAGAGTTCTGCAGGCCCTCAATCACAAGCCTCCACCAGTGATTCAGGCCAGCAGGTGACCCAGCCATCTGAAATTGAGCAAGGATTCCTTCCTAAAGGCTGGGAAGTCCGGCATGCACCAAATGGGAGGCCTTTCTTTATTGACCACAACACTAAAACCACCACCTGGGAAGATCCAAGATTGAAAATTCCAGCCCATCTGAGAGGAAAGACATCACTTGATACTTCCAATGATCTAGGGCCTTTACCTCCAGGATGGGAAGAGAGAACTCACACAGATGGAAGAATCTTCTACATAAATCACAATATAAAAAGAACACAATGGGAAGATCCTCGGTTGGAGAATGTAGCAATAACTGGACCAGCAGTGCCCTACTCCAGGGATTACAAAAGAAAGTATGAGTTCTTCCGAAGAAAGTTGAAGAAGCAGAATGACATTCCAAACAAATTTGAAATGAAACTTCGCCGAGCAACTGTTCTTGAAGACTCTTACCGGAGAATTATGGGTGTCAAGAGAGCAGACTTCCTGAAGGCTCGACTGTGGATTGAGTTTGATGGTGAAAAGGGATTGGATTATGGAGGAGTTGCCAGAGAATGGTTCTTCCTGATCTCAAAGGAAATGTTTAACCCTTATTATGGGTTGTTTGAATATTCTGCTACGGACAATTATACCCTACAGATAAATCCAAACTCTGGATTGTGTAACGAAGATCACCTCTCTTACTTCAAGTTTATTGGTCGGGTAGCTGGAATGGCAGTTTATCATGGCAAACTGTTGGATGGTTTTTTCATCCGCCCATTTTACAAGATGATGCTTCACAAACCAATAACCCTTCATGATATGGAATCTGTGGATAGTGAATATTACAATTCCCTAAGATGGATTCTTGAAAATGACCCAACAGAATTGGACCTCAGGTTTATCATAGATGAAGAACTTTTTGGACAGACACATCAACATGAGCTGAAAAATGGTGGATCAGAAATAGTTGTCACCAATAAGAACAAAAAGGAATATATTTATCTTGTAATACAATGGCGATTTGTAAACCGAATCCAGAAGCAAATGGCTGCTTTTAAAGAGGGATTCTTTGAACTAATACCACAGGATCTCATCAAAATTTTTGATGAAAATGAACTAGAGCTTCTTATGTGTGGACTGGGAGATGTTGATGTGAATGACTGGAGGGAACATACAAAGTATAAAAATGGCTACAGTGCAAATCATCAGGTTATACAGTGGTTTTGGAAGGCTGTTTTAATGATGGATTCAGAAAAAAGAATAAGATTACTTCAGTTTGTCACTGGCACATCTCGGGTGCCTATGAATGGATTTGCTGAACTATACGGTTCAAATGGACCACAGTCATTTACAGTTGAACAGTGGGGTACTCCTGAAAAGCTGCCAAGAGCTCATACCTGTTTTAATCGCCTGGACTTGCCACCTTATGAATCATTTGAAGAATTATGGGATAAACTTCAGATGGCAATTGAAAACACCCAGGGCTTTGATGGAGTTGATTAG MYRLMSAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAPAQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSRCFARAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDIPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKNDFTKFKTEQENEAKCRNSKPGKKKNDFEQGELYLREKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGCKYLDYMQKIFHDLDMLTTVQEENEPVIYNRASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKTSGSEDDNAEQAEELEPGWVVLDQPDAACHLQQQQEPSPLPPGWEERQDILGRTYYVNHESRRTQWKRPTPQDNLTDAENGNIQLQAQRAFTTRRQISEETESVDNRESSENWEIIREDEATMYSNQAFPSPPPSSNLDVPTHLAEELNARLTIFGNSAVSQPASSSNHSSRRGSLQAYTFEEQPTLPVLLPTSSGLPPGWEEKQDERGRSYYVDHNSRTTTWTKPTVQATVETSQLTSSQSSAGPQSQASTSDSGQQVTQPSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKIPAHLRGKTSLDTSNDLGPLPPGWEERTHTDGRIFYINHNIKRTQWEDPRLENVAITGPAVPYSRDYKRKYEFFRRKLKKQNDIPNKFEMKLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGEKGLDYGGVAREWFFLISKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPFYKMMLHKPITLHDMESVDSEYYNSLRWILENDPTELDLRFIIDEELFGQTHQHELKNGGSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQSFTVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQGFDGVD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28789 DAB1::ST6GALNAC5 ENSG00000173406.16::ENSG00000117069.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 325 FALSE NA FALSE NA DAB1 ENSG00000173406.16 protein_coding - - chr1:56994778-58546734:- chr1:58506060:- chr1:57460451-59012406:- chr1:58971732:- ST6GALNAC5 ENSG00000117069.15 protein_coding + + chr1:76867480-77067546:+ chr1:77044204:+ chr1:77333165-77533231:+ chr1:77509889:+ chr1:58451049,chr1:58451051 chr1:77032976,chr1:77032974 NA NA chr1:58916721,chr1:58916723 chr1:77498661,chr1:77498659 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:18.32Mb] 13 8 13 8 ONLY_REF_SPLICE YES_LDAS 0.2376 GT 1.9329 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-7156 chr1:77060143-77060202:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28790 IQCG::HBS1L ENSG00000114473.14::ENSG00000112339.15 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 328 FALSE NA FALSE NA IQCG ENSG00000114473.14 protein_coding - - chr3:197889077-197960142:- chr3:197959529:- chr3:197615948-197687013:- chr3:197686400:- HBS1L ENSG00000112339.15 protein_coding - - chr6:134960378-135103056:- chr6:135050647:- chr6:135281516-135424194:- chr6:135371785:- chr3:197956733,chr3:197956738 chr6:135057735,chr6:135057737 NA NA chr3:197683604,chr3:197683609 chr6:135378873,chr6:135378875 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr6] 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.1811 GT 1.7819 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-3662 chr6:134979338-134979432:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28791 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 327 FALSE NA FALSE NA FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36298000:+ chr18:33877676-34360183:+ chr18:33877963:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36248922:+ chr18:33767460-33852120:+ chr18:33828885:+ chr18:36345102,chr18:36345100 chr18:36228416,chr18:36228411 NA NA chr18:33925065,chr18:33925063 chr18:33808379,chr18:33808374 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Formin_GBD_N|6-123|1.2e-55^Drf_GBD-PARTIAL|140-165~|1.4e-05 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.03Mb];LOCAL_REARRANGEMENT:+:[25557] 11 6 11 6 ONLY_REF_SPLICE YES_LDAS 0.1924 GT 1.5656 AG 1.8892 ENST00000590592.6 1-165 ENST00000261326.6 1961-2667 chr18|+|[0]36297836-36298000[2]<==>chr18|+|[1]36248922-36249000[1]|[2]36251159-36251283[0]|[1]36256968-36257073[1]|[2]36260037-36260175[2]|[0]36266749-36266853[2]|[0]36268533-36268685[2] atggccacgctggcttgccgggtgcagttcttggacgacacggaccctttcaacagcaccaacttccccgagcccagccggccgccgctgttcacgttccgcgaggacctcgcgctcggcacccagctggcgggggtccataggctgctgcaggcgccgcacaagGGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTGTGCTGACAGAGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGTTGTCAACATTTTTTGGCCGTCCTTGTCATTTGATCAAACAAAGTTCAAACTCTCAAAGGAATGCAAAGAAGAAACATGGAAAAGATCAACTTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTATTTTGGAACTTCACCGGCAACTAAACACCAGTGATGAGAATGGAAAGGAGGAATTATTCTCACTGAAGGATCTCAGCTTGCGTTTTCGTGCCAATATTATTATCAATGGAAAAAGGGCTTTTGAAGAAGAGAAATGGGATGAGATTTCAATTGGCTCTTTGCGTTTCCAGGTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGACCAGCAAACTGGGCAACGAAACCAGCATGTTTTCCAAAAACTTTCTGAGAGTCGTGAAACAAAGGTGAACTTTGGCATGTACCTGATGCATGCATCATTGGATTTATCCTCCCCATGTTTCCTGTCTGTAGGATCTCAGGTGCTCCCTGTGTTGAAAGAGAATGTGGAAGGTCATGATTTACCTGCATCTGAGAAACACCAGGATGTTACCTCCTAA MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKGWSL*RCLLRKIVNGLRFAKAGSVLTE*VLMIVEKKFQAGCQHFLAVLVI*SNKVQTLKGMQRRNMEKINFLVQWPPFLW*MRHSIC*STHPVFWNFTGN*TPVMRMERRNYSH*RISACVFVPILLSMEKGLLKKRNGMRFQLALCVSRFWGLVTDAR*FASTSKLGNETSMFSKNFLRVVKQR*TLACT*CMHHWIYPPHVSCL*DLRCSLC*KRMWKVMIYLHLRNTRMLPP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,TRUE,TRUE|TRUE 33836931,33828885,33836931|33846712 FALSE,TRUE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28792 ERC1::WNK1 ENSG00000082805.21::ENSG00000060237.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 324 FALSE NA FALSE NA ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1116033:+ chr12:1099675-1605099:+ chr12:1225199:+ WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:813642:+ chr12:861745-1020618:+ chr12:922808:+ chr12:1137583,chr12:1137583 chr12:781481,chr12:781478 NA NA chr12:1246749,chr12:1246749 chr12:890647,chr12:890644 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ATG16|145-236|0.48^Fez1|146-297|1.3^PKcGMP_CC|147-158|4^ADIP|148-186|0.12^Crescentin|149-333|2.8^GAS|152-185|0.43^Cast|154-460|2.7e-145^AAA_13|170-244|0.22^Y1_Tnp|175-228|0.00054^GAS|209-296|9^ADIP|212-249|0.13^ATG16|264-363|9^ADIP|264-318|0.0026^GAS|269-377|9^AAA_13|271-447|9^Fez1|272-423|4.3^PKcGMP_CC|302-312|0.3^ADIP|316-410|1.5^GAS|319-476|1.1^Crescentin|324-490|0.014^PKcGMP_CC|346-365|0.21^ATG16|378-429|0.0098^PKcGMP_CC|384-410|1.6e-05^GAS|404-559|0.096^ADIP|417-499|0.00064^AAA_13|426-603|1e-06^Crescentin|432-625|2.8e-07^ATG16|436-541|4e-07^Fez1|436-533|1.5e-05^PKcGMP_CC|443-460|0.93^GAS|452-632|3.5e-07^Cast|455-942|1.4e-234^PKcGMP_CC|474-489|2^ADIP|485-546|0.059^Fez1|506-653|0.00027^PKcGMP_CC|531-547|0.36^ATG16|548-634|5.5e-05^PKcGMP_CC|559-579|0.76^ADIP|573-655|5.5e-06^PKcGMP_CC|580-597|1^PKcGMP_CC|618-635|0.0049^AAA_13|629-831|0.27^Crescentin|630-837|0.18^GAS|635-719|5.2^ATG16|635-787|2^ADIP|644-719|0.95^Fez1|657-816|0.65^PKcGMP_CC|691-719|0.08^GAS|732-888|0.074^ADIP|732-820|0.93^PKcGMP_CC|736-745|0.35^PKcGMP_CC|766-783|0.03^ATG16|794-887|0.4^ADIP|819-887|0.95^Fez1|829-944|0.00078^Crescentin|834-944|0.1^AAA_13|840-943|2.5^Y1_Tnp|868-948|0.2^PKcGMP_CC|872-888|5.6^GAS|877-944|0.069^ADIP|888-940|1.6^PKcGMP_CC|897-911|0.98^ATG16|900-937|0.17^PKcGMP_CC|924-935|0.62 OSR1_C|1558-1584|3.7e-06 ["ERC1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];LOCAL_REARRANGEMENT:+:[79057] 11 11 11 11 ONLY_REF_SPLICE YES_LDAS 0.249 GT 1.9899 AG 1.7232 ENST00000542302.6 1-1569 ENST00000530271.6 760-8502 chr12|+|[0]1027904-1028572[2]|[0]1083164-1083580[2]|[0]1104750-1104824[2]|[0]1110192-1110347[2]|[0]1112215-1112298[2]|[0]1115866-1116033[2]<==>chr12|+|[0]813642-813814[1]|[2]827042-827262[0]|[1]830003-830160[2]|[0]857161-857249[1]|[2]859245-859464[2]|[0]861013-861343[0]|[1]862083-862270[2]|[0]867866-869104[2]|[0]871265-871348[2]|[0]878212-878361[2]|[0]879573-880031[2]|[0]880721-880999[2]|[0]881692-881789[1]|[2]881911-882073[2]|[0]882943-883059[2]|[0]883395-883568[2]|[0]883774-883831[0]|[1]884121-884243[0]|[1]884649-886084[2]|[0]887221-887304[2]|[0]889140-889223[2]|[0]890453-890513[0]|[1]894562-894635[2]|[0]896071-896732[1]|[2]897479-897681[0]|[1]900476-900670[0]|[1]901561-901632[0]|[1]904453-904494[0]|[1]907847-908034[2]|[0]908475-908792[2] atgtatggaagtgcccgctctgttgggaaggtggagccgagcagccagagccctgggcgttcacccaggcttccacgttcccctcgcttgggtcaccgtcgaaccaacagtacgggagggagttcgggaagcagtgttggaggtggcagtgggaaaaccctttcaatggaaaatatacaatctttaaatgctgcctatgccacctctggccctatgtatctaagtgaccatgaaaatgtgggttcagaaacacctaaaagcaccatgacacttggccgttctgggggacgtctgccttacggtgttcggatgactgctatgggtagtagccccaatatagctagcagtggggttgctagtgacaccatagcatttggagagcatcacctccctcctgtgagtatggcatccactgtacctcactcccttcgtcaggcgagagataacacaatcatggatctgcagacacagctgaaggaagtattaagagaaaatgatctcttgcggaaggatgtggaagtaaaggagagcaaattgagttcttcaatgaatagcatcaagaccttctggagcccagagctgaagaaggaacgagccctgagaaaagatgaagcttccaaaatcaccatttggaaggaacagtacagagttgtacaggaggaaaaccagcacatgcagatgacaatccaggctctccaggatgaattgcggatccagagggacctgaatcagctgtttcagcaggatagtagcagcaggactggcgaaccttgtgtagcagagctgacagaggagaactttcagaggcttcatgctgagcatgagcggcaggccaaagagctgtttcttcttcgaaagacattggaggaaatggagctgcgtattgagactcaaaagcagaccctaaatgctcgggatgaatccattaagaagcttctggaaatgttgcagagcaaaggactttctgccaaggctaccgaggaagaccatgagagaacaagacgactggcagaggcagagatgcacgttcatcacctagaaagccttttggagcagaaggaaaaagagaacagtatgttgagagaggagatgcatcgaaggtttgagaatgctcctgattctgccaaaacaaaagctctgcaaactgttattgagatgaaggattcaaaaatttcctctatggagcgtgggcttcgagacctggaagaggaaattcagatgctgaaatcgaatggtgctttgagtactgaggaaagggaagaagaaatgaagcaaatggaagtgtatcggagccattctaaatttatgaaaaataaggtagaacaactgaaggaggaactaagttcgaaagaggctcaatgggaggagctgaaaaagaaagcggctggtcttcaggctgagattggccaggtgaaacaggagctgtccagaaaggacacagaactactcgccctgcagacaaagctagaaacactcacaaaccagttctcagatagtaaacagcacattgaagtgttgaaggagtccttgactgctaaggagcagagggctgccatcctgcagactgagGATCGAAAATTAACAAAGTCTGAGAGGCAGAGATTTAAAGAAGAAGCTGAAATGTTAAAAGGTCTTCAGCATCCCAATATTGTTAGATTTTATGATTCCTGGGAATCCACAGTAAAAGGAAAGAAGTGCATTGTTTTGGTGACTGAACTTATGACGTCTGGAACACTTAAAACGTATCTGAAAAGGTTTAAAGTGATGAAGATCAAAGTTCTAAGAAGCTGGTGCCGTCAGATCCTTAAAGGTCTTCAGTTTCTTCATACTCGAACTCCACCTATCATTCACCGCGATCTTAAATGTGACAACATCTTTATCACCGGCCCTACTGGCTCAGTCAAGATTGGAGACCTCGGTCTGGCAACCCTGAAGCGGGCTTCTTTTGCCAAGAGTGTGATAGGTACCCCAGAGTTCATGGCCCCTGAGATGTATGAGGAGAAATATGATGAATCCGTTGACGTTTATGCTTTTGGGATGTGCATGCTTGAGATGGCTACATCTGAATATCCTTACTCGGAGTGCCAAAATGCTGCACAGATCTACCGTCGCGTGACCAGTGGGGTGAAGCCAGCCAGTTTTGACAAAGTAGCAATTCCTGAAGTGAAGGAAATTATTGAAGGATGCATACGACAAAACAAAGATGAAAGATATTCCATCAAAGACCTTTTGAACCATGCCTTCTTCCAAGAGGAAACAGGAGTACGGGTAGAATTAGCAGAAGAAGATGATGGAGAAAAAATAGCCATAAAATTATGGCTACGTATTGAAGATATTAAGAAATTAAAGGGAAAATACAAAGATAATGAAGCTATTGAGTTTTCTTTTGATTTAGAGAGAGATGTCCCAGAAGATGTTGCACAAGAAATGGTAGAGTCTGGGTATGTCTGTGAAGGTGATCACAAGACCATGGCTAAAGCTATCAAAGACAGAGTATCATTAATTAAGAGGAAACGAGAGCAGCGGCAGTTGGTACGGGAGGAGCAAGAAAAAAAAAAGCAGGAAGAGAGCAGTCTCAAACAGCAGGTAGAACAATCCAGTGCTTCCCAGACAGGAATCAAGCAGCTCCCTTCTGCTAGCACCGGCATACCTACTGCTTCTACCACTTCAGCTTCAGTTTCTACACAAGTAGAACCTGAAGAACCTGAGGCAGATCAACATCAACAACTACAGTACCAGCAACCCAGTATATCTGTGTTATCTGATGGGACGGTTGACAGTGGTCAGGGATCCTCTGTCTTCACAGAATCTCGAGTGAGCAGCCAACAGACAGTTTCATATGGTTCCCAACATGAACAGGCACATTCTACAGGCACAGTCCCAGGGCATATACCTTCTACTGTCCAAGCACAGTCTCAGCCCCATGGGGTATATCCACCCTCAAGTGTGCCTCAGTCCATGGCGCATCCGTGTGGGGGGACCCCAACATACCCAGAATCACAGATATTTTTCCCAACTATTCATGAACGTCCAGTTTCTTTTTCACCACCTCCCACCTGCCCACCGAAAGTAGCCATTTCCCAGCGGCGTAAGAGCACCTCCTTCCTGGAAGCCCAAACTCACCACTTCCAACCCCTGCTGAGGACTGTTGGCCAAAGTCTTCTTCCACCTGGTGGCAGCCCAACTAACTGGACACCAGAGGCCGTAGTTATGTTGGGTACTACAGCCAGTAGAGTAACTGGAGAGTCATGTGAGATACAGGTCCATCCTATGTTTGAACCATCTCAAGTTTACAGTGACTATAGACCTGGACTAGTACTTCCAGAAGAAGCTCACTATTTTATTCCTCAGGAAGCAGTGTATGTAGCTGGGGTACATTACCAGGCCCGGGTGGCAGAACAGTATGAGGGCATTCCATACAACTCATCAGTACTGTCAAGTCCTATGAAACAGATACCTGAACAGAAGCCAGTACAAGGGGGCCCTACTTCAAGTTCTGTCTTTGAATTTCCATCTGGACAGGCTTTCCTGGTAGGACACCTTCAGAATCTAAGATTAGATTCTGGATTGGGTCCGGGATCTCCCCTCTCTAGTATTTCTGCACCTATCAGTACAGATGCTACACGTTTGAAATTTCACCCTGTCTTTGTTCCTCATTCTGCGCCTGCTGTGTTAACTCATAACAATGAGAGCAGAAGCAACTGTGTATTTGAATTTCATGTTCACACACCAAGCTCCTCTTCAGGAGAAGGAGGTGGAATTTTACCTCAGCGTGTTTACCGAAATCGGCAGGTTGCAGTGGACTTGAATCAAGAAGAACTGCCTCCTCAATCAGTTGGATTACATGGCTACTTGCAGCCTGTGACTGAAGAAAAGCATAATTACCATGCCCCAGAATTGACCGTTTCTGTGGTAGAGCCTATCGGACAGAACTGGCCAATAGGAAGCCCAGAATATTCCAGTGATTCCTCACAAATCACTTCTTCAGACCCCAGTGATTTTCAGTCACCTCCCCCTACAGGGGGAGCAGCTGCACCTTTTGGCTCTGACGTCTCAATGCCCTTTATCCATCTGCCTCAGACAGTGTTACAAGAATCCCCACTTTTCTTCTGTTTCCCCCAAGGAACCACATCTCAGCAGGTCTTAACTGCCTCATTTTCTTCAGGAGGATCTGCACTTCATCCACAGGCACAGGGGCAGAGCCAGGGTCAGCCATCCTCAAGTAGCTTAACAGGGGTTTCATCTTCCCAACCCATACAACATCCTCAGCAGCAGCAGGGAATACAGCAGACAGCCCCTCCTCAACAGACAGTGCAGTATTCACTTTCACAGACATCAACCTCCAGTGAGGCCACTACTGCACAGCCAGTGAGTCAGCCTCAAGCTCCACAAGTCTTGCCTCAAGTATCAGCTGGAAAACAGCTTCCAGTTTCCCAGCCAGTACCAACTATCCAAGGCGAACCTCAGATCCCAGTTGCGACACAACCCTCGGTTGTTCCAGTCCACTCTGGTGCTCATTTCCTTCCAGTGGGACAGCCGCTCCCTACTCCCTTGCTCCCTCAGTACCCTGTCTCTCAGATTCCCATATCAACTCCTCATGTGTCTACGGCTCAGACAGGTTTCTCATCCCTTCCCATCACAATGGCAGCTGGCATTACTCAGCCTCTGCTCACGTTGGCTTCATCTGCTACAACAGCTGCGATCCCGGGGGTATCAACTGTGGTTCCTAGTCAGCTTCCAACCCTTCTGCAGCCTGTGACTCAGCTGCCAAGTCAGGTTCACCCACAGCTCCTACAACCAGCAGTTCAGTCCATGGGAATACCAGCTAACCTTGGACAAGCTGCTGAGGTTCCACTTTCCTCTGGAGATGTTCTGTACCAGGGCTTCCCACCTCGACTGCCACCACAGTACCCAGGAGATTCAAATATTGCTCCCTCTTCCAACGTGGCTTCTGTTTGCATCCATTCTACAGTCCTATCCCCTCCCATGCCGACAGAAGTACTGGCTACACCTGGGTACTTTCCCACAGTGGTGCAGCCTTATGTGGAATCAAATCTTTTAGTTCCTATGGGTGGTGTAGGAGGACAGGTTCAAGTGTCCCAGCCAGGAGGGAGTTTAGCACAAGCCCCCACTACATCCTCCCAGCAAGCAGTTTTGGAGAGTACTCAGGGAGTCTCTCAGGTTGCTCCTGCAGAGCCAGTTGCAGTAGCACAGACCCAAGCTACCCAGCCGACCACTTTGGCTTCCTCTGTAGACAGTGCACATTCAGATGTTGCTTCAGGTATGAGTGATGGCAATGAGAACGTCCCATCTTCCAGTGGAAGGCATGAAGGAAGAACTACAAAACGGCATTACCGAAAATCTGTAAGGAGTCGCTCTCGACATGAAAAAACTTCACGCCCAAAATTAAGAATTTTGAATGTTTCAAATAAAGGAGACCGAGTAGTAGAATGTCAATTAGAGACTCATAATAGGAAAATGGTTACATTCAAATTTGACCTAGATGGTGACAACCCCGAGGAGATAGCAACAATTATGGTGAACAATGACTTTATTCTAGCAATAGAGAGAGAGTCGTTTGTGGATCAAGTGCGAGAAATTATTGAAAAAGCTGATGAAATGCTCAGTGAGGATGTCAGTGTGGAACCAGAGGGTGATCAGGGATTGGAGAGTCTACAAGGAAAGGATGACTATGGCTTTTCAGGTTCTCAGAAATTGGAAGGAGAGTTCAAACAACCAATTCCTGCGTCTTCCATGCCACAGCAAATAGGCATTCCTACCAGTTCTTTAACTCAAGTTGTTCATTCTGCGGGAAGGCGGTTTATAGTGAGTCCTGTGCCAGAAAGCCGATTACGAGAATCAAAAGTTTTCCCCAGTGAAATAACAGATACAGTTGCTGCCTCTACAGCTCAGAGCCCTGGAATGAACTTGTCTCACTCTGCATCATCCCTTAGTCTACAACAGGCCTTTTCTGAACTTAGACGTGCCCAAATGACAGAAGGACCCAACACAGCACCTCCAAACTTTAGTCATACAGGACCAACATTTCCAGTAGTACCTCCTTTCTTAAGTAGCATTGCTGGAGTCCCAACCACAGCAGCAGCCACAGCACCAGTCCCTGCAACAAGCAGCCCTCCTAATGACATTTCCACATCAGTAATTCAGTCTGAGGTTACAGTGCCCACTGAAGAGGGGATTGCTGGAGTTGCCACCAGCACAGGTGTGGTAACTTCAGGTGGTCTCCCCATACCACCTGTGTCTGAATCACCAGTACTTTCCAGCGTAGTTTCAAGTATCACAATACCTGCAGTTGTCTCAATATCTACTACATCCCCGTCACTTCAAGTCCCCACATCCACATCTGAGATCGTTGTTTCTAGTACAGCACTGTATCCTTCAGTAACAGTTTCAGCAACTTCAGCCTCTGCAGGGGGCAGTACTGCTACCCCAGGTCCTAAGCCTCCAGCTGTAGTATCTCAGCAGGCAGCAGGCAGCACTACTGTGGGAGCCACATTAACATCAGTTTCTACCACCACTTCATTCCCAAGCACAGCTTCACAGCTGTGCATTCAGCTTAGCAGCAGTACTTCTACTCCTACTTTAGCTGAAACCGTGGTAGTTAGCGCACACTCACTAGATAAGACATCTCATAGCAGTACAACTGGATTGGCTTTCTCCCTCTCTGCACCATCTTCCTCTTCCTCTCCTGGAGCAGGAGTGTCTAGTTATATTTCTCAGCCTGGTGGGCTGCATCCTTTGGTCATTCCATCAGTGATAGCTTCTACTCCTATTCTTCCCCAAGCAGCAGGACCTACTTCTACACCTTTATTACCCCAAGTACCTAGTATCCCACCCTTGGTACAGCCTGTTGCCAATGTGCCTGCTGTACAGCAGACACTAATTCATAGTCAGCCTCAACCAGCTTTGCTTCCCAACCAGCCCCATACTCATTGTCCTGAAGTAGATTCTGATACACAACCCAAAGCTCCTGGAATTGATGACATAAAGACTCTAGAAGAAAAGCTGCGGTCTCTGTTCAGTGAACACAGCTCATCTGGAGCTCAGCATGCCTCTGTCTCACTGGAGACCTCACTAGTCATAGAGAGCACTGTCACACCAGGCATCCCAACTACTGCTGTTGCACCAAGCAAACTCCTGACTTCTACCACAAGTACTTGCTTACCACCAACCAATTTACCACTAGGAACAGTTGCTTTGCCAGTTACACCAGTGGTCACACCTGGGCAAGTTTCTACCCCAGTCAGCACTACTACATCAGGAGTGAAACCTGGAACTGCTCCCTCCAAGCCACCTCTAACTAAGGCTCCGGTGCTGCCAGTGGGTACTGAACTTCCAGCAGGTACTCTACCCAGCGAGCAGCTGCCACCTTTTCCAGGACCTTCTCTAACCCAGTCCCAGCAACCTCTAGAGGATCTTGATGCTCAATTGAGAAGAACACTTAGTCCAGAGATGATCACAGTGACTTCTGCGGTTGGTCCTGTGTCCATGGCGGCTCCAACAGCAATCACAGAAGCAGGAACACAGCCTCAGAAGGGTGTTTCTCAAGTCAAAGAAGGCCCTGTCCTAGCAACTAGTTCAGGAGCTGGTGTTTTTAAGATGGGACGATTTCAGGTTTCTGTTGCAGCAGACGGTGCCCAGAAAGAGGGTAAAAATAAGTCAGAAGATGCAAAGTCTGTTCATTTTGAATCCAGCACCTCAGAGTCCTCAGTGCTATCAAGTAGTAGTCCAGAGAGTACCTTGGTGAAACCAGAGCCGAATGGCATAACCATCCCTGGTATCTCTTCAGATGTGCCAGAGAGTGCCCACAAAACTACTGCCTCAGAGGCAAAGTCAGACACTGGGCAGCCTACCAAGGTTGGACGTTTTCAGGTGACAACTACAGCAAACAAAGTGGGTCGTTTCTCTGTATCAAAAACTGAGGACAAGATCACTGACACAAAGAAAGAAGGACCAGTGGCATCTCCTCCTTTTATGGATTTGGAACAAGCTGTTCTTCCTGCTGTGATACCAAAGAAAGAGAAGCCTGAACTGTCAGAGCCTTCACATCTAAATGGGCCGTCTTCTGACCCGGAGGCCGCTTTTTTAAGTAGGGATGTGGATGATGGTTCCGGTAGTCCACACTCGCCCCATCAGCTGAGCTCAAAGAGCCTTCCTAGCCAGAATCTAAGTCAAAGCCTTAGTAATTCATTTAACTCCTCTTACATGAGTAGCGACAATGAGTCAGATATCGAAGATGAAGACTTAAAGTTAGAGCTGCGACGACTACGAGATAAACATCTCAAAGAGATTCAGGACCTGCAGAGTCGCCAGAAGCATGAAATTGAATCTTTGTATACCAAACTGGGCAAGGTGCCCCCTGCTGTTATTATTCCCCCAGCTGCTCCCCTTTCAGGGAGAAGACGACGACCCACTAAAAGCAAAGGCAGCAAATCTAGTCGAAGCAGTTCCTTGGGGAATAAAAGCCCCCAGCTTTCAGGTAACCTGTCTGGTCAGAGTGCAGCTTCAGTCTTGCACCCCCAGCAGACCCTCCACCCTCCTGGCAACATCCCAGAGTCCGGGCAGAATCAGCTGTTACAGCCCCTTAAGCCATCTCCCTCCAGTGACAACCTCTATTCAGCCTTCACCAGTGATGGTGCCATTTCAGTACCAAGCCTTTCTGCTCCAGGTCAAGGCTGTGCGAAGTTTAACTGTGCATCTGAACAGGTGACATTCAAACCTGGTGGCAGGAGGACCCGATTTCTGAGGAAGATGGTGAAAAAAGTCTGTCCTTGCAACCAGCTCTGTAGAACCAGCAGCACAAACACTGTTGGGGCAACAGTGAACAGCCAAGCCGCCCAAGCTCAGCCTCCTGCCATGACGTCCAGCAGGAAGGGCACATTCACAGATGACTTGCACAAGTTGGTAGACAATTGGGCCCGAGATGCCATGAATCTCTCAGGCAGGAGAGGAAGCAAAGGGCACATGAATTACGAGGGCCCTGGAATGGCAAGGAAGTTCTCTGCACCTGGGCAACTGTGCATCTCCATGACCTCGAACCTGGGTGGCTCTGCCCCCATCTCTGCAGCATCAGCTACCTCTCTAGGTCACTTCACCAAGTCTATGTGCCCCCCACAGCAGTATGGCTTTCCAGCTACCCCATTTGGCGCTCAATGGAGTGGGACGGGTGGCCCAGCACCACAGCCACTTGGCCAGTTCCAACCTGTGGGAACTGCCTCCTTGCAGAATTTCAACATCAGCAATTTGCAGAAATCCATCAGCAACCCCCCAGGCTCCAACCTGCGGACCACTTAG MYGSARSVGKVEPSSQSPGRSPRLPRSPRLGHRRTNSTGGSSGSSVGGGSGKTLSMENIQSLNAAYATSGPMYLSDHENVGSETPKSTMTLGRSGGRLPYGVRMTAMGSSPNIASSGVASDTIAFGEHHLPPVSMASTVPHSLRQARDNTIMDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKEAQWEELKKKAAGLQAEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKSVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEETGVRVELAEEDDGEKIAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRKREQRQLVREEQEKKKQEESSLKQQVEQSSASQTGIKQLPSASTGIPTASTTSASVSTQVEPEEPEADQHQQLQYQQPSISVLSDGTVDSGQGSSVFTESRVSSQQTVSYGSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSVPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYSDYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQIPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLKFHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGTTSQQVLTASFSSGGSALHPQAQGQSQGQPSSSSLTGVSSSQPIQHPQQQQGIQQTAPPQQTVQYSLSQTSTSSEATTAQPVSQPQAPQVLPQVSAGKQLPVSQPVPTIQGEPQIPVATQPSVVPVHSGAHFLPVGQPLPTPLLPQYPVSQIPISTPHVSTAQTGFSSLPITMAAGITQPLLTLASSATTAAIPGVSTVVPSQLPTLLQPVTQLPSQVHPQLLQPAVQSMGIPANLGQAAEVPLSSGDVLYQGFPPRLPPQYPGDSNIAPSSNVASVCIHSTVLSPPMPTEVLATPGYFPTVVQPYVESNLLVPMGGVGGQVQVSQPGGSLAQAPTTSSQQAVLESTQGVSQVAPAEPVAVAQTQATQPTTLASSVDSAHSDVASGMSDGNENVPSSSGRHEGRTTKRHYRKSVRSRSRHEKTSRPKLRILNVSNKGDRVVECQLETHNRKMVTFKFDLDGDNPEEIATIMVNNDFILAIERESFVDQVREIIEKADEMLSEDVSVEPEGDQGLESLQGKDDYGFSGSQKLEGEFKQPIPASSMPQQIGIPTSSLTQVVHSAGRRFIVSPVPESRLRESKVFPSEITDTVAASTAQSPGMNLSHSASSLSLQQAFSELRRAQMTEGPNTAPPNFSHTGPTFPVVPPFLSSIAGVPTTAAATAPVPATSSPPNDISTSVIQSEVTVPTEEGIAGVATSTGVVTSGGLPIPPVSESPVLSSVVSSITIPAVVSISTTSPSLQVPTSTSEIVVSSTALYPSVTVSATSASAGGSTATPGPKPPAVVSQQAAGSTTVGATLTSVSTTTSFPSTASQLCIQLSSSTSTPTLAETVVVSAHSLDKTSHSSTTGLAFSLSAPSSSSSPGAGVSSYISQPGGLHPLVIPSVIASTPILPQAAGPTSTPLLPQVPSIPPLVQPVANVPAVQQTLIHSQPQPALLPNQPHTHCPEVDSDTQPKAPGIDDIKTLEEKLRSLFSEHSSSGAQHASVSLETSLVIESTVTPGIPTTAVAPSKLLTSTTSTCLPPTNLPLGTVALPVTPVVTPGQVSTPVSTTTSGVKPGTAPSKPPLTKAPVLPVGTELPAGTLPSEQLPPFPGPSLTQSQQPLEDLDAQLRRTLSPEMITVTSAVGPVSMAAPTAITEAGTQPQKGVSQVKEGPVLATSSGAGVFKMGRFQVSVAADGAQKEGKNKSEDAKSVHFESSTSESSVLSSSSPESTLVKPEPNGITIPGISSDVPESAHKTTASEAKSDTGQPTKVGRFQVTTTANKVGRFSVSKTEDKITDTKKEGPVASPPFMDLEQAVLPAVIPKKEKPELSEPSHLNGPSSDPEAAFLSRDVDDGSGSPHSPHQLSSKSLPSQNLSQSLSNSFNSSYMSSDNESDIEDEDLKLELRRLRDKHLKEIQDLQSRQKHEIESLYTKLGKVPPAVIIPPAAPLSGRRRRPTKSKGSKSSRSSSLGNKSPQLSGNLSGQSAASVLHPQQTLHPPGNIPESGQNQLLQPLKPSPSSDNLYSAFTSDGAISVPSLSAPGQGCAKFNCASEQVTFKPGGRRTRFLRKMVKKVCPCNQLCRTSSTNTVGATVNSQAAQAQPPAMTSSRKGTFTDDLHKLVDNWARDAMNLSGRRGSKGHMNYEGPGMARKFSAPGQLCISMTSNLGGSAPISAASATSLGHFTKSMCPPQQYGFPATPFGAQWSGTGGPAPQPLGQFQPVGTASLQNFNISNLQKSISNPPGSNLRTT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 TRUE Lung no_match TRUE Lung adenocarcinoma,Esophageal carcinoma LUNG,OESOPHAGUS no_match 1137738|1137738,1213990|1213990|1213990|1213990|1213990 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE 987378|977032,977032|987378|987381|980431|992109 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28794 TRIO::DLG2 ENSG00000038382.23::ENSG00000150672.19 GI1 SRR8615384 SRR8639177 CENTRAL_NERVOUS_SYSTEM glioma (gliosarcoma) primary star-fusion TRUE TRUE TRUE 329 FALSE NA FALSE NA TRIO ENSG00000038382.23 protein_coding + + chr5:14143342-14532128:+ chr5:14316743:+ chr5:14143451-14532237:+ chr5:14316852:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83833770:- chr11:83166055-85339379:- chr11:83544813:- chr5:14320062,chr5:14320061 chr11:83853876,chr11:83853877 NA NA chr5:14320171,chr5:14320170 chr11:83564919,chr11:83564920 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CRAL_TRIO|75-203|1.3e-09^CRAL_TRIO_2|84-211|2.6e-11^RhoGEF|186-246|0.74^Spectrin|221-337|0.00023^CRAL_TRIO_2|227-251|0.24^HsbA|284-326|1.3^Spectrin|341-444|3.8e-13^RhoGEF|397-466|0.98^Med26|414-432|0.0034^Spectrin|457-494|2.8^PH|541-574|1.2^RhoGEF|569-569|2.3^Spectrin|570-670|2.6e-12^Med26|592-609|1.8^Myb_DNA-bind_4|605-619|8.3^HsbA|619-671|0.5^Spectrin|675-783|4.5e-07^RhoGEF|683-737|2.1^HsbA|705-785|3.4^CRAL_TRIO|762-813|8.1^Spectrin|800-892|4.8^Spectrin|909-1006|8.9e-13^HsbA|911-957|0.48^Wx5_PLAF3D7|940-1006|0.0014^Myb_DNA-bind_4|971-1040|0.0005^SH3_9|1036-1044|8.9^Spectrin|1140-1243|2.7e-13^Wx5_PLAF3D7|1180-1237|1.9^Myb_DNA-bind_4|1184-1199|5.4^HsbA|1214-1259|0.16^RhoGEF|1296-1464|3e-39^IQ_SEC7_PH|1297-1315|3.7^PH_10|1482-1530|1.9e-05^IQ_SEC7_PH|1492-1593|6.2e-07^PH|1503-1590|5e-12^PH_13|1528-1590|2.7e-05^SH3_1|1662-1713|1.1e-10^SH3_2|1662-1712|8.3e-09^SH3_9|1663-1701|4.9e-07^SH3-RhoG_link-PARTIAL|1715-1731~|6e-115 none ["TRIO:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr5--chr11] 10 2 10 2 ONLY_REF_SPLICE YES_LDAS 0.1358 GT 1.9329 AG 1.9329 ENST00000698541.1 1-1731 ENST00000648622.1 1311-2673 chr5|+|[0]14143726-14143882[0]|[1]14270825-14270899[0]|[1]14280322-14280436[1]|[2]14286871-14287063[2]|[0]14290716-14291228[2]|[0]14293012-14293134[2]|[0]14297072-14297263[2]|[0]14304461-14304592[2]|[0]14316513-14316743[2]<==>chr11|-|[2]83459818-83459924[1]|[0]83462002-83462093[2]|[1]83466708-83466817[0]|[2]83469201-83469373[1]|[0]83471626-83471727[1]|[0]83472727-83472777[1]|[0]83484129-83484228[0]|[2]83532708-83532783[2]|[1]83541682-83541858[2]|[1]83633211-83633325[1]|[0]83786690-83786792[0]|[2]83833614-83833770[2] atgagcggcagcagcggcggagccgccgcccccgccgcgtcctccggccccgccgcggcggccagcgcggctggctcgggctgcgggggcggtgccggcgagggggcagaggaggcggccaaggacctggccgacatcgcggccttcttccgatccgggtttcgaaaaaacgatgaaatgaaagctatggatgttttaccaattttgaaggaaaaagttgcatacctttcaggtgggagagataaacgtggaggtcccattttaacgtttccggcccgcagcaatcatgacagaatacgacaggaggatctcaggagactcatttcctatctagcctgtattcccagcgaggaggtctgcaagcgtggcttcacggtgatcgtggacatgcgtgggtccaagtgggactccatcaagccccttctgaagatcctgcaggagtccttcccctgctgcatccatgtggccctgatcatcaagccagacaacttctggcagaaacagaggactaattttggcagttctaaatttgaatttgagacaaatatggtctctttagaaggccttaccaaagtagttgatccttctcagctaactcctgagtttgatggctgcctggaatacaaccacgaagaatggattgaaatcagagttgcttttgaagactacattagcaatgccacccacatgctgtctcggctggaggaacttcaggacatcctagctaagaaggagctgcctcaggatttagagggggctcggaatatgatcgaggaacattctcagctgaagaagaaggtgattaaggcccccatcgaggacctggatttggagggacagaagctgcttcagaggatacagagcagtgaaagctttcccaaaaagaactcaggctcaggcaatgcggacctgcagaacctcttgcccaaggtgtccaccatgctggaccggctgcactcgacacggcagcatctgcaccagatgtggcatgtgaggaagctgaagctggaccagtgcttccagctgaggctgtttgaacaggatgctgagaagatgtttgactggatcacacacaacaaaggcctgtttctaaacagctacacagagattgggaccagccaccctcatgccatggagcttcagacgcagcacaatcactttgccatgaactgtatgaacgtgtatgtaaatataaaccgcatcatgtcggtggccaatcgtctggtggagtctggccactatgcctcgcagcagatcaggcagatcgcgagtcagctggagcaggagtggaaggcgtttgcggcagccctggatgagcggagcaccttgctggacatgtcctccattttccaccagaaggccgaaaagtatatgagcaacgtggattcatggtgtaaagcttgcggtgaggtagaccttccctcagagctgcaggacctagaagatgccattcatcaccaccagggaatatatgaacatatcactcttgcttattctgaggtcagccaagatgggaagtcgctccttgacaagctccagcggcccttgactcccggcagctccgattccctgacagcctctgccaactactccaaggccgtgcaccatgtcctggatgtcatccacgaggtgctgcaccaccagcggcagctggagaacatctggcaacaccgcaaggtccggctgcatcagaggctgcagctgtgtgttttccagcaggacgttcagcagAGAGCCTCGCAAGGTAGTCCTGCACAAAGGCTCCACTGGCCTGGGCTTCAACATTGTCGGTGGGGAAGATGGAGAAGGTATTTTTGTGTCCTTCATTCTGGCTGGTGGACCAGCAGACCTAAGTGGGGAGCTCCAGAGAGGAGACCAGATCCTATCGGTGAATGGCATTGACCTCCGTGGTGCATCCCACGAGCAGGCAGCTGCTGCACTAAAGGGGGCTGGACAGACAGTGACGATTATAGCACAATATCAACCTGAAGATTACGCTCGATTTGAGGCCAAAATCCATGACCTACGAGAGCAGATGATGAACCACAGCATGAGCTCCGGGTCCGGATCCCTGCGAACCAATCAGAAACGCTCCCTCTACGTCAGAGCCATGTTCGACTACGACAAGAGCAAGGACAGTGGGCTGCCAAGTCAAGGACTTAGTTTTAAATATGGAGATATTCTCCACGTTATCAATGCCTCTGATGATGAGTGGTGGCAAGCCAGGAGAGTCATGCTGGAGGGAGACAGTGAGGAGATGGGGGTCATCCCCAGCAAAAGGAGGGTGGAAAGAAAGGAACGTGCCCGATTGAAGACAGTGAAGTTTAATGCCAAACCTGGAGTGATTGATTCGAAAGGGTCATTCAATGACAAGCGTAAAAAGAGCTTCATCTTTTCACGAAAATTCCCATTCTACAAGAACAAGGAGCAGAGTGAGCAGGAAACCAGTGATCCTGAACGAGGACAAGAAGACCTCATTCTTTCCTATGAGCCTGTTACAAGGCAGGAAATAAACTACACCCGGCCGGTGATTATCCTGGGGCCCATGAAGGATCGGATCAATGACGACTTGATATCTGAATTCCCTGATAAATTTGGCTCCTGTGTGCCTCATACTACGAGGCCAAAGCGAGACTACGAGGTGGATGGCAGAGACTATCACTTTGTCATTTCCAGAGAACAAATGGAGAAAGATATCCAAGAGCACAAGTTTATAGAAGCCGGCCAGTACAATGACAATTTATATGGAACCAGTGTGCAGTCTGTGAGATTTGTAGCAGAAAGAGGCAAACACTGTATACTTGATGTATCAGGAAATGCTATCAAGCGGTTACAAGTTGCCCAGCTCTATCCCATTGCCATCTTCATAAAACCCAGGTCTCTGGAACCTCTTATGGAGATGAATAAGCGTCTAACAGAGGAACAAGCCAAGAAAACCTATGATCGAGCAATTAAGCTAGAACAAGAATTTGGAGAATATTTTACAGCTATTGTCCAAGGAGATACTTTAGAAGATATATATAACCAATGCAAGCTTGTTATTGAAGAGCAATCTGGGCCTTTCATCTGGATTCCCTCAAAGGAAAAGTTATAA MSGSSGGAAAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDILAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSESFPKKNSGSGNADLQNLLPKVSTMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIRQIASQLEQEWKAFAAALDERSTLLDMSSIFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQRASQGSPAQRLHWPGLQHCRWGRWRRYFCVLHSGWWTSRPKWGAPERRPDPIGEWH*PPWCIPRAGSCCTKGGWTDSDDYSTIST*RLRSI*GQNP*PTRADDEPQHELRVRIPANQSETLPLRQSHVRLRQEQGQWAAKSRT*F*IWRYSPRYQCL***VVASQESHAGGRQ*GDGGHPQQKEGGKKGTCPIEDSEV*CQTWSD*FERVIQ*QA*KELHLFTKIPILQEQGAE*AGNQ*S*TRTRRPHSFL*ACYKAGNKLHPAGDYPGAHEGSDQ*RLDI*IP**IWLLCASYYEAKARLRGGWQRLSLCHFQRTNGERYPRAQVYRSRPVQ*QFIWNQCAVCEICSRKRQTLYT*CIRKCYQAVTSCPALSHCHLHKTQVSGTSYGDE*ASNRGTSQENL*SSN*ARTRIWRIFYSYCPRRYFRRYI*PMQACY*RAIWAFHLDSLKGKVI FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Triple functional domain protein CAMK Trio O75962 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28797 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 330 FALSE NA FALSE NA TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31783921:+ chr20:30327074-30389608:+ chr20:30371724:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31527484:+ chr20:30102231-30165726:+ chr20:30115287:+ chr20:31792618,chr20:31792617 chr20:31526684,chr20:31526680 NA NA chr20:30380421,chr20:30380420 chr20:30114487,chr20:30114483 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Aurora-A_bind|1-68|3.6e-45^TPX2|126-139|1.7^TPX2_importin|127-166|1^TPX2_importin|205-297|7.1e-08^TPX2|206-234|4^TPX2|260-270|0.29^TPX2|324-338|1.6^TPX2_importin|325-350|0.76^zf-TFIIIC|346-432|2.5e-05^TPX2_importin|401-525|3.7e-54^TPX2|422-441|1.4^TPX2|469-486|0.16^TPX2_importin|535-553|1.4^TPX2|545-561|0.0019^TPX2_importin|576-624|0.028^TPX2|579-624|9.9e-06^TPX2_importin|593-681|8.8e-05^TPX2_importin|644-777|0.0077^TPX2|644-679|0.0056^TPX2|696-770|2.5e-20 Peptidase_A22B-PARTIAL|~184-349|1.1e-101^SPP-PARTIAL|~184-331|2.9e-08^DUF4345|259-309|0.26^Presenilin|260-319|1.7e-06 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.16Mb] 273 63 273 63 ONLY_REF_SPLICE YES_LDAS 2.9424 GT 1.5219 AG 1.9656 ENST00000340513.4 1-1521 ENST00000398174.9 184-1281 chr20|+|[0]31757477-31757582[0]|[1]31760057-31760179[0]|[1]31766556-31766682[1]|[2]31770343-31770471[1]|[2]31771560-31771682[1]|[2]31775867-31775988[0]|[1]31777487-31777638[2]|[0]31778813-31778984[0]|[1]31780939-31781046[0]|[1]31782249-31782390[1]|[2]31783705-31783921[2]<==>chr20|+|[0]31527484-31527582[2]|[0]31538179-31538261[1]|[2]31544947-31545035[0]|[1]31549029-31549114[2]|[0]31549207-31549332[2]|[0]31550064-31550121[0]|[1]31554746-31554829[0]|[1]31559611-31559647[1]|[2]31561634-31561736[2]|[0]31566210-31566295[1]|[2]31568078-31568224[1]|[2]31569120-31569219[2] atgtcacaagttaaaagctcttattcctatgatgccccctcggatttcatcaatttttcatccttggatgatgaaggagatactcaaaacatagattcatggtttgaggagaaggccaatttggagaataagttactggggaagaatggaactggagggctttttcagggcaaaactcctttgagaaaggctaatcttcagcaagctattgtcacacctttgaaaccagttgacaacacttactacaaagaggcagaaaaagaaaatcttgtggaacaatccattccgtcaaatgcttgttcttccctggaagttgaggcagccatatcaagaaaaactccagcccagcctcagagaagatctcttaggctttctgctcagaaggatttggaacagaaagaaaagcatcatgtaaaaatgaaagccaagagatgtgccactcctgtaatcatcgatgaaattctaccctctaagaaaatgaaagtttctaacaacaaaaagaagccagaggaagaaggcagtgctcatcaagatactgctgaaaagaatgcatcttccccagagaaagccaagggtagacatactgtgccttgtatgccacctgcaaagcagaagtttctaaaaagtactgaggagcaagagctggagaagagtatgaaaatgcagcaagaggtggtggagatgcggaaaaagaatgaagaattcaagaaacttgctctggctggaatagggcaacctgtgaagaaatcagtgagccaggtcaccaaatcagttgacttccacttccgcacagatgagcgaatcaaacaacatcctaagaaccaggaggaatataaggaagtgaactttacatctgaactacgaaagcatccttcatctcctgcccgagtgactaagggatgtaccattgttaagcctttcaacctgtcccaaggaaagaaaagaacatttgatgaaacagtttctacatatgtgccccttgcacagcaagttgaagacttccataaacgaacccctaacagatatcatttgaggagcaagaaggatgatattaagacagggtcttgctccgtcacccaggctggagtgcagtggcgtgatcatggctcacttcagtgtccaactcctgggctcaagcaatcctcctgccttagccttccaaacctgttaccctccaaatcttctgtgaccaagatttgcagagacccacagactcctgtactgcaaaccaaacaccgtgcacgggctgtgacctgcaaaagtacagcagagctggaggctgaggagctcgagaaattgcaacaatacaaattcaaagcacgtgaacttgatcccagaatacttgaaggtgggcccatcttgcccaagaaaccacctgtgaaaccacccaccgagcctattggctttgatttggaaattgagaaaagaatccaggagcgagaatcaaagaagaaaacagaggatgaacactttgaatttcattccagaccttgccctactaagattttggaagatgttgtgAATGCTTCAGACATGCCTGAAACAATCACCAGCCGGGATGCCGCCCGCTTCCCCATCATCGCCAGCTGCACACTCTTGGGGCTCTACCTCTTTTTCAAAATATTCTCCCAGGAGTACATCAACCTCCTGCTGTCCATGTATTTCTTCGTGCTGGGAATCCTGGCCCTGTCCCACACCATCAGCCCCTTCATGAATAAGTTTTTTCCAGCCAGCTTTCCAAATCGACAGTACCAGCTGCTCTTCACACAGGGTTCTGGGGAAAACAAGGAAGAGATCATCAATTATGAATTTGACACCAAGGACCTGGTGTGCCTGGGCCTGAGCAGCATCGTTGGCGTCTGGTACCTGCTGAGGAAGCACTGGATTGCCAACAACCTTTTTGGCCTGGCCTTCTCCCTTAATGGAGTAGAGCTCCTGCACCTCAACAATGTCAGCACTGGCTGCATCCTGCTGGGCGGACTCTTCATCTACGATGTCTTCTGGGTATTTGGCACCAATGTGATGGTGACAGTGGCCAAGTCCTTCGAGGCACCAATAAAATTGGTGTTTCCCCAGGATCTGCTGGAGAAAGGCCTCGAAGCAAACAACTTTGCCATGCTGGGACTTGGAGATGTCGTCATTCCAGGGATCTTCATTGCCTTGCTGCTGCGCTTTGACATCAGCTTGAAGAAGAATACCCACACCTACTTCTACACCAGCTTTGCAGCCTACATCTTCGGCCTGGGCCTTACCATCTTCATCATGCACATCTTCAAGCATGCTCAGCCTGCCCTCCTATACCTGGTCCCCGCCTGCATCGGTTTTCCTGTCCTGGTGGCGCTGGCCAAGGGAGAAGTGACAGAGATGTTCAGCTACGAGTCCTCGGCGGAAATCCTGCCTCATACCCCGAGGCTCACCCACTTCCCCACAGTCTCGGGCTCCCCAGCCAGCCTGGCCGACTCCATGCAGCAGAAGCTAGCTGGCCCTCGCCGCCGGCGCCCGCAGAATCCCAGCGCCATTTATGAGGAGTCAAATCCTAAGGATCCAGCGGCAGTGACAGAATCCAAAGAGGGAACAGAGGCATCAGCATCGAAGGGGCTGGAGAAGAAAGAGAAATGA MSQVKSSYSYDAPSDFINFSSLDDEGDTQNIDSWFEEKANLENKLLGKNGTGGLFQGKTPLRKANLQQAIVTPLKPVDNTYYKEAEKENLVEQSIPSNACSSLEVEAAISRKTPAQPQRRSLRLSAQKDLEQKEKHHVKMKAKRCATPVIIDEILPSKKMKVSNNKKKPEEEGSAHQDTAEKNASSPEKAKGRHTVPCMPPAKQKFLKSTEEQELEKSMKMQQEVVEMRKKNEEFKKLALAGIGQPVKKSVSQVTKSVDFHFRTDERIKQHPKNQEEYKEVNFTSELRKHPSSPARVTKGCTIVKPFNLSQGKKRTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDIKTGSCSVTQAGVQWRDHGSLQCPTPGLKQSSCLSLPNLLPSKSSVTKICRDPQTPVLQTKHRARAVTCKSTAELEAEELEKLQQYKFKARELDPRILEGGPILPKKPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVVNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKGLEKKEK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary no_match TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 FALSE|FALSE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 TRUE|TRUE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28798 MARS1::TMEM120B ENSG00000166986.15::ENSG00000188735.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 331 FALSE NA FALSE NA MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57504299:+ chr12:57869228-57911352:+ chr12:57898082:+ TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121743629:+ chr12:122150658-122220907:+ chr12:122181535:+ chr12:57507950,chr12:57507944 chr12:121737060,chr12:121737051 NA NA chr12:57901733,chr12:57901727 chr12:122174966,chr12:122174957 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GST_N_5|1-74|5.3e-34^GST_N_2|45-69|1.6e-05^GST_N|46-68|0.00014^GST_C|111-180|1.6e-09^GST_C_2|111-174|1.2e-08^GST_C_3|115-174|1.1e-05^GST_C_3|219-244|4.8^GST_C_2|231-247|5.3^tRNA-synt_1g|266-544|2.1e-108^tRNA-synt_1|268-507|7e-08^GST_C_2|282-303|1^DZR_2|384-408|0.16^C1_1|386-410|0.016^zinc-ribbons_6|388-429|0.0052^DZR_2|404-438|0.00066^C1_1|416-439|0.0023^GST_N_5|422-451|8.1^GST_C_2|453-465|5.6 TMPIT-PARTIAL|~70-331|5.5e-159^HAUS-augmin3-PARTIAL|~70-85|6.6e-06^Helo_like_N-PARTIAL|~70-83|5.3e-05^Seryl_tRNA_N-PARTIAL|~70-78|0.00059^Exonuc_VII_L-PARTIAL|~70-86|0.00057 none 199 101 199 101 ONLY_REF_SPLICE YES_LDAS 2.6271 GT 1.9656 AG 1.8256 ENST00000537638.6 1-1368 ENST00000449592.7 70-1020 chr12|+|[0]57488091-57488199[0]|[1]57489019-57489109[1]|[2]57489267-57489345[2]|[0]57489424-57489558[2]|[0]57489896-57489971[0]|[1]57490207-57490379[2]|[0]57490538-57490644[1]|[2]57498157-57498273[1]|[2]57498420-57498623[1]|[2]57500321-57500522[2]|[0]57504225-57504299[2]<==>chr12|+|[0]121743629-121743747[1]|[2]121748326-121748442[1]|[2]121750380-121750439[1]|[2]121752128-121752223[1]|[2]121761649-121761738[1]|[2]121770907-121770972[1]|[2]121771488-121771549[0]|[1]121773421-121773513[0]|[1]121774658-121774722[2]|[0]121775062-121775130[2]|[0]121775609-121775722[2] atgagactgttcgtgagtgatggcgtcccgggttgcttgccggtgctggccgccgccgggagagcccggggcagagcagaggtgctcatcagcactgtaggcccggaagattgtgtggtcccgttcctgacccggcctaaggtccctgtcttgcagctggatagcggcaactacctcttctccactagtgcaatctgccgatatttttttttgttatctggctgggagcaagatgacctcactaaccagtggctggaatgggaagcgacagagctgcagccagctttgtctgctgccctgtactatttagtggtccaaggcaagaagggggaagatgttcttggttcagtgcggagagccctgactcacattgaccacagcttgagtcgtcagaactgtcctttcctggctggggagacagaatctctagccgacattgttttgtggggagccctatacccattactgcaagatcccgcctacctccctgaggagctgagtgccctgcacagctggttccagacactgagtacccaggaaccatgtcagcgagctgcagagactgtactgaaacagcaaggtgtcctggctctccggccttacctccaaaagcagccccagcccagccccgctgagggaagggctgtcaccaatgagcctgaggaggaggagctggctaccctatctgaggaggagattgctatggctgttactgcttgggagaagggcctagaaagtttgcccccgctgcggccccagcagaatccagtgttgcctgtggctggagaaaggaatgtgctcatcaccagtgccctcccttacgtcaacaatgtcccccaccttgggaacatcattggttgtgtgctcagtgccgatgtctttgccaggtactctcgcctccgccagtggaacaccctctatctgtgtgggacagatgagtatggtacagcaacagagaccaaggctctggaggagggactaaccccccaggagatctgcgacaagtaccacatcatccatgctgacatctaccgctggtttaacatttcgtttgatatttttggtcgcaccaccactccacagcagaccaaaatcacccaggacattttccagcagttgctgaaacgaggttttgtgctgcaagatactgtggagcaactgcgatgtgagcactgtgctcgcttcctggctgaccgcttcgtggagggcgtgtgtcccttctgtggctatgaggaggctcggggtgaccagtgtgacaagtgtggcaagctcatcaatgctgtcgagcttaagaagcctcagtgtaaagtctgccgatcatgccctgtggtgcagtcgagccagcacctgtttctggacctgcctaagGAGACGCACAGGATCTACAAGCAGAAGCTGGAGGAGCTGGCTGCGCTGCAGACGCTGTGTAGCAGTTCCATCAGTAAGCAGAAGAAGCACCTCAAGGACTTGAAGCTTACACTCCAGAGGTGCAAACGCCATGCCAGTCGGGAGGAGGCGGAGCTCGTTCAGCAGATGGCAGCGAACATCAAGGAGCGGCAGGACGTCTTCTTCGACATGGAGGCCTACCTGCCCAAGAAGAACGGGCTCTACTTGAACCTGGTCCTCGGCAATGTGAACGTGACCCTCCTCAGCAACCAGGCCAAGTTCGCCTACAAGGACGAATATGAGAAGTTCAAGCTCTACCTGACCATCATCCTGCTCCTGGGTGCCGTGGCATGTCGATTTGTCCTTCACTACAGGGTGACTGACGAAGTCTTCAACTTCCTGCTGGTGTGGTATTACTGCACCCTGACCATTCGGGAGAGCATTCTCATCAGCAACGGCTCAAGAATTAAAGGCTGGTGGGTGTCTCACCACTACGTCTCCACATTCCTGTCCGGAGTGATGCTGACCTGGCCTAATGGACCCATTTATCAGAAGTTTCGCAACCAGTTCTTAGCATTTTCCATTTTTCAGAGCTGCGTCCAGTTCCTGCAATATTATTACCAGAGGGGCTGCCTCTACCGGCTGCGGGCCCTGGGGGAGAGGAACCACCTGGATCTCACAGTGGAAGGGTTCCAGTCCTGGATGTGGCGGGGCCTCACCTTTCTCCTGCCCTTCCTCTTCTGTGGCCATTTCTGGCAGCTCTACAATGCCGTCACGCTGTTTGAGCTCTCCAGCCACGAGGAATGCAGAGAATGGCAGGTGTTCGTACTGGCGTTCACCTTCCTCATCCTCTTCCTCGGCAACTTCCTGACCACGCTCAAAGTCGTGCATGCCAAGCTCCAGAAGAACAGAGGCAAGACAAAGCAGCCGTGA MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLFSTSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRALTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQEPCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKETHRIYKQKLEELAALQTLCSSSISKQKKHLKDLKLTLQRCKRHASREEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECREWQVFVLAFTFLILFLGNFLTTLKVVHAKLQKNRGKTKQP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28799 ZNF766::BSPH1 ENSG00000196214.11::ENSG00000188334.3 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF766 ENSG00000196214.11 protein_coding + + chr19:52269587-52296046:+ chr19:52269631:+ chr19:52772840-52799299:+ chr19:52772884:+ BSPH1 ENSG00000188334.3 protein_coding - - chr19:47968046-47992170:- chr19:47968209:- chr19:48471303-48495427:- chr19:48471466:- chr19:52272936 chr19:47969440 NA NA chr19:52776189 chr19:48472697 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:4.28Mb] 52 0 52 0 ONLY_REF_SPLICE YES_LDAS 0.4554 GT 1.7056 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28805 CCDC57::SLC38A10 ENSG00000176155.21::ENSG00000157637.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 335 TRUE 4743 TRUE 1791 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82151560:- chr17:80059336-80170754:- chr17:80109436:- SLC38A10 ENSG00000157637.13 protein_coding - - chr17:81244811-81295547:- chr17:81253240:- chr17:79218611-79269347:- chr17:79227040:- chr17:82148957,chr17:82149207,chr17:82149209 chr17:81255393,chr17:81255393,chr17:81255392 NA NA chr17:80106833,chr17:80107083,chr17:80107085 chr17:79229193,chr17:79229193,chr17:79229192 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Tli4_C|169-233|0.00018^REST_helical|367-416|0.00078^Tli4_C|367-433|0.028^Tli4_C|471-531|0.023^REST_helical|583-605|1.8 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.81Mb] 16 10 16 5.71 ONLY_REF_SPLICE YES_LDAS 0.1901 GT 1.8256 AG 1.9086 ENST00000665763.1 1-2455 ENST00000374759.8 1289-3360 chr17|-|[0]82151560-82151773[0]|[2]82157748-82157948[0]|[2]82163200-82163357[1]|[0]82171701-82171853[1]|[0]82172638-82172860[0]|[2]82178474-82178605[0]|[2]82179027-82179189[2]|[1]82183774-82183932[2]|[1]82188219-82188419[2]|[1]82193756-82193830[2]|[1]82193982-82194139[0]|[2]82195263-82195364[0]|[2]82198314-82198422[2]|[1]82201538-82201944[0]<==>chr17|-|[2]81245556-81246673[1]|[0]81246885-81247061[1]|[0]81251493-81251612[1]|[0]81252195-81252683[1]|[0]81253073-81253240[1] atgctgccactgggctcagagcccgccctgaatgagctgctgcttcgcaaggaggaggagtggagggcgctgcaggcacaccgcacccagctgcaggaggcggctctgcaggacacacggagccagctggaggaggcgcaggggaaactgcggtgcctgcaggaggactttgtctacaaccttcaggtgctggaggagcgggacctcgagctggagcgctatgacgccgccttcgcccaggccagggagtgggaagaggccaggcgggcagaggtgagcgagctcaagatagaggcagctaagctgaggcaggcgctagccagagaggccaggaaggtggaggagctgcagcagcagcagcagctggcattccaggagcatcgcctggagctggagcgcgtccacagtgacaagaatggtgagattgaccaccaccgggaacagtatgaaaatctaaaatggacactggagagaaaacttgaggagctcgacggtgagcttgctctgcagagacaggaactgctgctggagtttgaatcgaaaatgcggaagagggagcacgaattccgtctgcaggctgacaacatgagcaacacagccttgtcccgggagcttaaggttaaactactgcacaaagagctggaggctctgaaggaagccggggcaaaggctgcagagagtctgcagagggcagaggccaccaacgccgagctggagaggaagctccagagccgagccggggagctccaggacctggaggccatgagccgcgcccgggtaaaggatttagaggataaacttcactctgtgcagctaaccaggaagaaggaagaggaaacatttaagaggaagcatgaggagctcgaccgtctggccagggagaaggatgcagtgctggtggcggtgaagggagcccacgtggagcagctgcaggagctgcagaccagggttctggagctgcaggcccactgcgagaccctcgaggcgcagctccgcagggcagagtggagacaggctgacaccgccaaggagaaggacgctgccattgaccaacttcgtgaagatgcatcaactgtaaaatctgcctgggatgctcaaattgctcaactatctaaggagatggtctccagagaccttcagattcagacgctgcaggaagaagaggtgaagctcaaggcacaggtggcccgatcccagcaggacattgaaaggtacaagcaacagctgtccctggcagtggaaagggagcggagcctggagcgtgatcaggtgcagctgggcctggactggcagcgccgctgtgatgacattgaaagggaccagatccaaaagtcagaggccctgattcagggtctgagcatggcaaaaagtcaggttgctgccaagctgcaggagacagagcaggcgctacaggagcaggaggtggtgctgaaggccgtgaccctggaacgagaccaggccgtgcaggccctgaggatgcatgggctccccagaccaggggcacagatgcttctcaggcagcatgaagaagaaataagtaaagactttccatccagtgagatccagcggctccgagagcagaacacgagcttgcgaaacgcgattgcccagatgaggaaagaaatggaggctctaagccatcagattcctcctcccatccagacagcggcagagagcacagatgcaaaccagcctgacccagaggctgggggagatgccgccactcctgattatgttctggcccttgaagcagaaatacgaactctaaagcataagtttaaaactctggaaaagcatctagaagatgtgttggatcctttaaagatgtcctcacctcatgctgagtctcagcccagcgtccgcacctcgacagagacgactggagggtctgcccaagctggtcaagccggagggtctgtccaagctggtcaagcaggaggatctgtccaagctggcccagtatcctctggactggcactcaggaagctcggggacagagtgcagctcctaaacctgctggtgacacgactcagacagaaggtgctgcgggaacccctggagccggccgctctccagcgtgagcttccccgtgaggtggaccaggtacacctggaggttttggagctgcggaagcaggtggctgagctggggaagcatctcaggatagcccagcacgggggagcggagccttcaggcaggaagcagcccccagcctcggacgccgtggcccttgggagagagggcctcaccaagagagggcctatggaggccgaggaccagggggagcttttcctgcacctccggtcagtggcacgtgccccccagaccttatctatgcaccgactccagagaaagctgaaggaggcagccagaaaaatcatcagcctccgcctggagaaagagcagctcatcgagatggggaacaggctccgtgcagagctgggccgacccgaaaCCCAGGATCCGGTTGTGGCCGTGGCTGAGGATGGCCGGGAGAAGCCGAAGCTGCCGAAGGAGAGAGAGGAGCTGGAGCAGGCCCAGATCAAGGGGCCCGTGGATGTGCCTGGACGGGAAGATGGCAAGGAGGCACCGGAGGAGGCACAGCTCGATCGCCCTGGGCAAGGGATTGCTGTGCCTGTGGGCGAGGCCCACCGCCACGAGCCTCCTGTTCCTCACGACAAGGTGGTGGTAGATGAAGGCCAAGACCGAGAGGTGCCAGAAGAGAACAAACCTCCATCCAGACACGCGGGCGGAAAGGCTCCAGGGGTCCAGGGCCAGATGGCGCCGCCTCTGCCCGACTCAGAAAGAGAGAAACAAGAGCCGGAGCAGGGAGAGGTTGGGAAGAGGCCTGGACAGGCCCAGGCCTTGGAGGAGGCGGGTGATCTTCCTGAAGATCCCCAGAAAGTTCCAGAAGCAGATGGTCAGCCAGCTGTCCAGCCTGCAAAGGAGGACCTGGGGCCAGGAGACAGGGGCCTGCATCCTCGGCCCCAGGCAGTGCTGTCTGAGCAGCAGAACGGCCTGGCGGTGGGTGGAGGGGAAAAGGCCAAGGGGGGACCGCCGCCAGGCAACGCCGCCGGGGACACAGGGCAGCCCGCAGAGGACAGCGACCACGGTGGGAAGCCTCCCCTCCCAGCGGAGAAGCCGGCTCCAGGGCCTGGGCTGCCGCCCGAGCCTCGCGAGCAGAGGGACGTGGAGCGAGCGGGTGGAAACCAGGCGGCCAGCCAGCTGGAGGAAGCTGGCAGGGCGGAGATGCTGGACCACGCCGTCCTGCTTCAGGTGATCAAAGAACAGCAGGTGCAGCAAAAGCGCTTGCTGGACCAGCAGGAGAAGCTGCTGGCGGTGATCGAGGAGCAGCACAAGGAGATCCACCAGCAGAGGCAGGAGGACGAGGAGGATAAACCCAGGCAGGTGGAGGTGCATCAAGAGCCCGGGGCAGCGGTGCCCAGAGGCCAGGAGGCCCCTGAAGGCAAGGCCAGGGAGACGGTGGAGAATCTGCCTCCCCTGCCTTTGGACCCTGTCCTCAGAGCTCCTGGGGGCCGCCCTGCTCCATCCCAGGACCTTAACCAGCGCTCCCTGGAGCACTCTGAGGGGCCTGTGGGCAGAGACCCTGCTGGCCCTCCTGACGGCGGCCCTGACACAGAGCCTCGGGCAGCCCAGGCCAAGCTGAGAGATGGCCAGAAGGATGCCGCCCCCAGGGCAGCTGGCACTGTGAAGGAGCTCCCCAAGGGCCCGGAGCAGGTGCCCGTGCCAGACCCCGCCAGGGAAGCCGGGGGCCCAGAGGAGCGCCTCGCAGAGGAATTCCCTGGGCAAAGTCAGGACGTTACTGGCGGTTCCCAAGACAGGAAAAAACCTGGGAAGGAGGTGGCAGCCACTGGCACCAGCATTCTGAAGGAAGCCAACTGGCTCGTGGCAGGGCCAGGAGCAGAGACGGGGGACCCTCGCATGAAGCCCAAGCAAGTGAGCCGAGACCTGGGCCTTGCAGCGGACCTGCCCGGTGGGGCGGAAGGAGCAGCTGCACAGCCCCAGGCTGTGTTACGCCAGCCGGAACTGCGGGTCATCTCTGATGGCGAGCAGGGTGGACAGCAGGGCCACCGGCTGGACCATGGCGGTCACCTGGAGATGAGAAAGGCCCGCGGGGGGGACCATGTGCCTGTGTCCCACGAGCAGCCGAGAGGCGGGGAGGACGCTGCTGTCCAGGAGCCCAGGCAGAGGCCAGAGCCAGAGCTGGGGCTCAAACGAGCTGTCCCGGGGGGCCAGAGGCCGGACAATGCCAAGCCCAACCGGGACCTGAAACTGCAGGCTGGCTCCGACCTCCGGAGGCGACGGCGGGACCTTGGCCCTCATGCAGAGGGTCAGCTGGCCCCGAGGGATGGGGTCATCATTGGCCTTAACCCCCTGCCTGATGTCCAGGTGAACGACCTCCGTGGCGCCCTGGATGCCCAGCTCCGCCAGGCTGCGGGGGGAGCTCTGCAGGTGGTCCACAGCCGGCAGCTTAGACAGGCGCCTGGGCCTCCAGAGGAGTCCTAG MLPLGSEPALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVAELGKHLRIAQHGGAEPSGRKQPPASDAVALGREGLTKRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMGNRLRAELGRPETQDPVVAVAEDGREKPKLPKEREELEQAQIKGPVDVPGREDGKEAPEEAQLDRPGQGIAVPVGEAHRHEPPVPHDKVVVDEGQDREVPEENKPPSRHAGGKAPGVQGQMAPPLPDSEREKQEPEQGEVGKRPGQAQALEEAGDLPEDPQKVPEADGQPAVQPAKEDLGPGDRGLHPRPQAVLSEQQNGLAVGGGEKAKGGPPPGNAAGDTGQPAEDSDHGGKPPLPAEKPAPGPGLPPEPREQRDVERAGGNQAASQLEEAGRAEMLDHAVLLQVIKEQQVQQKRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKPRQVEVHQEPGAAVPRGQEAPEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPAREAGGPEERLAEEFPGQSQDVTGGSQDRKKPGKEVAATGTSILKEANWLVAGPGAETGDPRMKPKQVSRDLGLAADLPGGAEGAAAQPQAVLRQPELRVISDGEQGGQQGHRLDHGGHLEMRKARGGDHVPVSHEQPRGGEDAAVQEPRQRPEPELGLKRAVPGGQRPDNAKPNRDLKLQAGSDLRRRRRDLGPHAEGQLAPRDGVIIGLNPLPDVQVNDLRGALDAQLRQAAGGALQVVHSRQLRQAPGPPEES* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28809 RORA::ANXA2 ENSG00000069667.16::ENSG00000182718.18 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE FALSE TRUE 338 FALSE NA FALSE NA RORA ENSG00000069667.16 protein_coding - - chr15:60488284-61229302:- chr15:60592387:- chr15:60780483-61521501:- chr15:60884586:- ANXA2 ENSG00000182718.18 protein_coding - - chr15:60347134-60402883:- chr15:60355998:- chr15:60639333-60695082:- chr15:60648197:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-C4-PARTIAL|17-31~|4e-37 none ["DepMap2023"];INTRACHROMOSOMAL[chr15:0.09Mb];NEIGHBORS[85401] 12 2 12 2 ONLY_REF_SPLICE YES_LDAS 0.1226 GT 1.9086 AG 1.9656 ENST00000449337.6 1-31 ENST00000557906.6 449-1020 chr15|-|[0]60592387-60592417[0]<==>chr15|-|[2]60347630-60347689[0]|[2]60349075-60349197[0]|[2]60351193-60351251[1]|[0]60351724-60351819[1]|[0]60352383-60352476[0]|[2]60354154-60354213[0]|[2]60355919-60355998[1] atgatgtattttgtgatcgcagcgatgaaagTGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACACATCTGGTGACTTCCGCAAGCTGATGGTTGCCCTGGCAAAGGGTAGAAGAGCAGAGGATGGCTCTGTCATTGATTATGAACTGATTGACCAAGATGCTCGGGATCTCTATGACGCTGGAGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACCGAGCGGAGCGTGCCCCACCTCCAGAAAGTATTTGATAGGTACAAGAGTTACAGCCCTTATGACATGTTGGAAAGCATCAGGAAAGAGGTTAAAGGAGACCTGGAAAATGCTTTCCTGAACCTGGTTCAGTGCATTCAGAACAAGCCCCTGTATTTTGCTGATCGGCTGTATGACTCCATGAAGGGCAAGGGGACGCGAGATAAGGTCCTGATCAGAATCATGGTCTCCCGCAGTGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTACGGCAAGTCCCTGTACTATTATATCCAGCAAGACACTAAGGGCGACTACCAGAAAGCGCTGCTGTACCTGTGTGGTGGAGATGACTGA MMYFVIAAMKVYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGDD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28810 CCDC57::SLC38A10 ENSG00000176155.21::ENSG00000157637.13 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE FALSE NA TRUE 4743 TRUE 1791 CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82151560:- chr17:80059336-80170754:- chr17:80109436:- SLC38A10 ENSG00000157637.13 protein_coding - - chr17:81244811-81295547:- chr17:81253235:- chr17:79218611-79269347:- chr17:79227035:- chr17:82148957,chr17:82149207,chr17:82149209 chr17:81255393,chr17:81255393,chr17:81255392 NA NA chr17:80106833,chr17:80107083,chr17:80107085 chr17:79229193,chr17:79229193,chr17:79229192 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tli4_C|169-233|0.00018^REST_helical|367-416|0.00078^Tli4_C|367-433|0.028^Tli4_C|471-531|0.023^REST_helical|583-605|1.8 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.81Mb] 12 10 12 4.29 INCL_NON_REF_SPLICE YES_LDAS 0.1427 GT 1.8256 AG 1.8062 ENST00000665763.1 1-2455 ENST00000374759.8 1294-3360 chr17|-|[0]82151560-82151773[0]|[2]82157748-82157948[0]|[2]82163200-82163357[1]|[0]82171701-82171853[1]|[0]82172638-82172860[0]|[2]82178474-82178605[0]|[2]82179027-82179189[2]|[1]82183774-82183932[2]|[1]82188219-82188419[2]|[1]82193756-82193830[2]|[1]82193982-82194139[0]|[2]82195263-82195364[0]|[2]82198314-82198422[2]|[1]82201538-82201944[0]<==>chr17|-|[2]81245556-81246673[1]|[0]81246885-81247061[1]|[0]81251493-81251612[1]|[0]81252195-81252683[1]|[0]81253073-81253235[0] atgctgccactgggctcagagcccgccctgaatgagctgctgcttcgcaaggaggaggagtggagggcgctgcaggcacaccgcacccagctgcaggaggcggctctgcaggacacacggagccagctggaggaggcgcaggggaaactgcggtgcctgcaggaggactttgtctacaaccttcaggtgctggaggagcgggacctcgagctggagcgctatgacgccgccttcgcccaggccagggagtgggaagaggccaggcgggcagaggtgagcgagctcaagatagaggcagctaagctgaggcaggcgctagccagagaggccaggaaggtggaggagctgcagcagcagcagcagctggcattccaggagcatcgcctggagctggagcgcgtccacagtgacaagaatggtgagattgaccaccaccgggaacagtatgaaaatctaaaatggacactggagagaaaacttgaggagctcgacggtgagcttgctctgcagagacaggaactgctgctggagtttgaatcgaaaatgcggaagagggagcacgaattccgtctgcaggctgacaacatgagcaacacagccttgtcccgggagcttaaggttaaactactgcacaaagagctggaggctctgaaggaagccggggcaaaggctgcagagagtctgcagagggcagaggccaccaacgccgagctggagaggaagctccagagccgagccggggagctccaggacctggaggccatgagccgcgcccgggtaaaggatttagaggataaacttcactctgtgcagctaaccaggaagaaggaagaggaaacatttaagaggaagcatgaggagctcgaccgtctggccagggagaaggatgcagtgctggtggcggtgaagggagcccacgtggagcagctgcaggagctgcagaccagggttctggagctgcaggcccactgcgagaccctcgaggcgcagctccgcagggcagagtggagacaggctgacaccgccaaggagaaggacgctgccattgaccaacttcgtgaagatgcatcaactgtaaaatctgcctgggatgctcaaattgctcaactatctaaggagatggtctccagagaccttcagattcagacgctgcaggaagaagaggtgaagctcaaggcacaggtggcccgatcccagcaggacattgaaaggtacaagcaacagctgtccctggcagtggaaagggagcggagcctggagcgtgatcaggtgcagctgggcctggactggcagcgccgctgtgatgacattgaaagggaccagatccaaaagtcagaggccctgattcagggtctgagcatggcaaaaagtcaggttgctgccaagctgcaggagacagagcaggcgctacaggagcaggaggtggtgctgaaggccgtgaccctggaacgagaccaggccgtgcaggccctgaggatgcatgggctccccagaccaggggcacagatgcttctcaggcagcatgaagaagaaataagtaaagactttccatccagtgagatccagcggctccgagagcagaacacgagcttgcgaaacgcgattgcccagatgaggaaagaaatggaggctctaagccatcagattcctcctcccatccagacagcggcagagagcacagatgcaaaccagcctgacccagaggctgggggagatgccgccactcctgattatgttctggcccttgaagcagaaatacgaactctaaagcataagtttaaaactctggaaaagcatctagaagatgtgttggatcctttaaagatgtcctcacctcatgctgagtctcagcccagcgtccgcacctcgacagagacgactggagggtctgcccaagctggtcaagccggagggtctgtccaagctggtcaagcaggaggatctgtccaagctggcccagtatcctctggactggcactcaggaagctcggggacagagtgcagctcctaaacctgctggtgacacgactcagacagaaggtgctgcgggaacccctggagccggccgctctccagcgtgagcttccccgtgaggtggaccaggtacacctggaggttttggagctgcggaagcaggtggctgagctggggaagcatctcaggatagcccagcacgggggagcggagccttcaggcaggaagcagcccccagcctcggacgccgtggcccttgggagagagggcctcaccaagagagggcctatggaggccgaggaccagggggagcttttcctgcacctccggtcagtggcacgtgccccccagaccttatctatgcaccgactccagagaaagctgaaggaggcagccagaaaaatcatcagcctccgcctggagaaagagcagctcatcgagatggggaacaggctccgtgcagagctgggccgacccgaaaGATCCGGTTGTGGCCGTGGCTGAGGATGGCCGGGAGAAGCCGAAGCTGCCGAAGGAGAGAGAGGAGCTGGAGCAGGCCCAGATCAAGGGGCCCGTGGATGTGCCTGGACGGGAAGATGGCAAGGAGGCACCGGAGGAGGCACAGCTCGATCGCCCTGGGCAAGGGATTGCTGTGCCTGTGGGCGAGGCCCACCGCCACGAGCCTCCTGTTCCTCACGACAAGGTGGTGGTAGATGAAGGCCAAGACCGAGAGGTGCCAGAAGAGAACAAACCTCCATCCAGACACGCGGGCGGAAAGGCTCCAGGGGTCCAGGGCCAGATGGCGCCGCCTCTGCCCGACTCAGAAAGAGAGAAACAAGAGCCGGAGCAGGGAGAGGTTGGGAAGAGGCCTGGACAGGCCCAGGCCTTGGAGGAGGCGGGTGATCTTCCTGAAGATCCCCAGAAAGTTCCAGAAGCAGATGGTCAGCCAGCTGTCCAGCCTGCAAAGGAGGACCTGGGGCCAGGAGACAGGGGCCTGCATCCTCGGCCCCAGGCAGTGCTGTCTGAGCAGCAGAACGGCCTGGCGGTGGGTGGAGGGGAAAAGGCCAAGGGGGGACCGCCGCCAGGCAACGCCGCCGGGGACACAGGGCAGCCCGCAGAGGACAGCGACCACGGTGGGAAGCCTCCCCTCCCAGCGGAGAAGCCGGCTCCAGGGCCTGGGCTGCCGCCCGAGCCTCGCGAGCAGAGGGACGTGGAGCGAGCGGGTGGAAACCAGGCGGCCAGCCAGCTGGAGGAAGCTGGCAGGGCGGAGATGCTGGACCACGCCGTCCTGCTTCAGGTGATCAAAGAACAGCAGGTGCAGCAAAAGCGCTTGCTGGACCAGCAGGAGAAGCTGCTGGCGGTGATCGAGGAGCAGCACAAGGAGATCCACCAGCAGAGGCAGGAGGACGAGGAGGATAAACCCAGGCAGGTGGAGGTGCATCAAGAGCCCGGGGCAGCGGTGCCCAGAGGCCAGGAGGCCCCTGAAGGCAAGGCCAGGGAGACGGTGGAGAATCTGCCTCCCCTGCCTTTGGACCCTGTCCTCAGAGCTCCTGGGGGCCGCCCTGCTCCATCCCAGGACCTTAACCAGCGCTCCCTGGAGCACTCTGAGGGGCCTGTGGGCAGAGACCCTGCTGGCCCTCCTGACGGCGGCCCTGACACAGAGCCTCGGGCAGCCCAGGCCAAGCTGAGAGATGGCCAGAAGGATGCCGCCCCCAGGGCAGCTGGCACTGTGAAGGAGCTCCCCAAGGGCCCGGAGCAGGTGCCCGTGCCAGACCCCGCCAGGGAAGCCGGGGGCCCAGAGGAGCGCCTCGCAGAGGAATTCCCTGGGCAAAGTCAGGACGTTACTGGCGGTTCCCAAGACAGGAAAAAACCTGGGAAGGAGGTGGCAGCCACTGGCACCAGCATTCTGAAGGAAGCCAACTGGCTCGTGGCAGGGCCAGGAGCAGAGACGGGGGACCCTCGCATGAAGCCCAAGCAAGTGAGCCGAGACCTGGGCCTTGCAGCGGACCTGCCCGGTGGGGCGGAAGGAGCAGCTGCACAGCCCCAGGCTGTGTTACGCCAGCCGGAACTGCGGGTCATCTCTGATGGCGAGCAGGGTGGACAGCAGGGCCACCGGCTGGACCATGGCGGTCACCTGGAGATGAGAAAGGCCCGCGGGGGGGACCATGTGCCTGTGTCCCACGAGCAGCCGAGAGGCGGGGAGGACGCTGCTGTCCAGGAGCCCAGGCAGAGGCCAGAGCCAGAGCTGGGGCTCAAACGAGCTGTCCCGGGGGGCCAGAGGCCGGACAATGCCAAGCCCAACCGGGACCTGAAACTGCAGGCTGGCTCCGACCTCCGGAGGCGACGGCGGGACCTTGGCCCTCATGCAGAGGGTCAGCTGGCCCCGAGGGATGGGGTCATCATTGGCCTTAACCCCCTGCCTGATGTCCAGGTGAACGACCTCCGTGGCGCCCTGGATGCCCAGCTCCGCCAGGCTGCGGGGGGAGCTCTGCAGGTGGTCCACAGCCGGCAGCTTAGACAGGCGCCTGGGCCTCCAGAGGAGTCCTAG MLPLGSEPALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVAELGKHLRIAQHGGAEPSGRKQPPASDAVALGREGLTKRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMGNRLRAELGRPERSGCGRG*GWPGEAEAAEGERGAGAGPDQGARGCAWTGRWQGGTGGGTARSPWARDCCACGRGPPPRASCSSRQGGGR*RPRPRGARREQTSIQTRGRKGSRGPGPDGAASARLRKRETRAGAGRGWEEAWTGPGLGGGG*SS*RSPESSRSRWSASCPACKGGPGARRQGPASSAPGSAV*AAERPGGGWRGKGQGGTAARQRRRGHRAARRGQRPRWEASPPSGEAGSRAWAAARASRAEGRGASGWKPGGQPAGGSWQGGDAGPRRPASGDQRTAGAAKALAGPAGEAAGGDRGAAQGDPPAEAGGRGG*TQAGGGASRARGSGAQRPGGP*RQGQGDGGESASPAFGPCPQSSWGPPCSIPGP*PALPGAL*GACGQRPCWPS*RRP*HRASGSPGQAERWPEGCRPQGSWHCEGAPQGPGAGARARPRQGSRGPRGAPRRGIPWAKSGRYWRFPRQEKTWEGGGSHWHQHSEGSQLARGRARSRDGGPSHEAQASEPRPGPCSGPARWGGRSSCTAPGCVTPAGTAGHL*WRAGWTAGPPAGPWRSPGDEKGPRGGPCACVPRAAERRGGRCCPGAQAEARARAGAQTSCPGGPEAGQCQAQPGPETAGWLRPPEATAGPWPSCRGSAGPEGWGHHWP*PPA*CPGERPPWRPGCPAPPGCGGSSAGGPQPAA*TGAWASRGVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28811 ACOT7::HMCN1 ENSG00000097021.21::ENSG00000143341.12 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 337 TRUE 655 TRUE 237 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6393257:- chr1:6324329-6453827:- chr1:6453317:- HMCN1 ENSG00000143341.12 protein_coding + + chr1:185734391-186190949:+ chr1:185962518:+ chr1:185703523-186160081:+ chr1:185931650:+ chr1:6353087,chr1:6353090 chr1:185934201,chr1:185934198 NA NA chr1:6413147,chr1:6413150 chr1:185903333,chr1:185903330 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame 4HBT|59-139|2.1e-18^TBCC-PARTIAL|83-143~|0.087^tRNA_anti-codon|109-132|0.47 Ig_3-PARTIAL|~1829-1902|5.2e-17^Ig_2|1836-1915|6.7e-12^I-set|1838-1915|7.3e-18^C1-set|1841-1889|0.049^C2-set_2|1842-1877|0.00029^ig|1844-1908|7.6e-09^Ig_C17orf99|1844-1914|0.9^BiPBP_C|1846-1907|0.36^V-set_CD47|1847-1916|0.0022^Ig_6|1853-1900|0.24^Receptor_2B4|1858-1909|0.33^Pox_vIL-18BP|1861-1913|0.039^C2-set|1870-1915|0.25^V-set|1877-1916|0.0021^Izumo-Ig|1883-1915|1.8^DRL_cat|1898-2009|9.2e-05^Ig_3|1929-1995|2.2e-15^ig|1930-2005|1.2e-05^I-set|1931-2008|2.3e-16^Ig_2|1932-1998|9.5e-12^Ig_C17orf99|1936-2001|3.6^BiPBP_C|1936-1963|0.41^C2-set_2|1938-1968|0.00066^Receptor_2B4|1951-1998|0.46^Ig_6|1971-1994|2.6^V-set|1976-2010|0.0098^Izumo-Ig|1980-2008|0.52^C2-set_2|2011-2054|0.00045^Ig_3|2012-2087|9.1e-18^Ig_2|2012-2095|1e-10^I-set|2013-2100|3.1e-17^V-set|2021-2050|5.7^V-set_CD47|2024-2100|0.052^ig|2025-2094|2.3e-05^BiPBP_C|2027-2059|0.076^C1-set|2028-2060|4.9^Receptor_2B4|2043-2092|1.4^Ig_6|2047-2085|3^C2-set|2064-2102|2.9^V-set|2068-2100|0.0087^Ig_C17orf99|2077-2101|3^Ig_3|2103-2178|3.7e-18^Ig_2|2104-2189|1.5e-10^I-set|2105-2191|1.3e-17^ig|2110-2186|8.6e-07^Ig_C17orf99|2118-2184|0.57^C2-set_2|2120-2150|0.012^V-set_CD47|2125-2188|0.0017^BiPBP_C|2125-2161|9.4^C1-set|2135-2177|5.9^C2-set|2145-2189|0.063^V-set|2151-2190|4.8e-05^Ig_6|2151-2176|1.3^Herpes_gI|2151-2173|6.1^Pox_vIL-18BP|2152-2187|0.18^Receptor_2B4|2157-2189|0.00084^Izumo-Ig|2158-2179|8.8^Ig_3|2194-2273|9.8e-14^I-set|2202-2286|2.1e-15^ig|2204-2282|1.8e-07^Ig_2|2206-2278|1.3e-07^C2-set_2|2220-2237|0.75^C2-set|2246-2287|5^V-set|2253-2286|0.075^Ig_C17orf99|2254-2287|0.054^Ig_3|2290-2367|2e-18^I-set|2298-2380|3.6e-19^Ig_2|2299-2374|4e-11^ig|2300-2374|6.7e-06^C2-set_2|2307-2334|0.012^C1-set|2307-2335|0.033^V-set_CD47|2308-2377|0.67^BiPBP_C|2312-2334|2.1^Ig_6|2333-2364|0.016^Pox_vIL-18BP|2341-2374|7.2^Herpes_gI|2346-2371|8.6^V-set|2347-2381|0.007^Ig_3|2383-2461|1.4e-18^I-set|2391-2474|1.7e-18^V-set|2392-2423|0.013^ig|2393-2465|2.8e-10^Ig_2|2395-2466|3.3e-12^C2-set_2|2397-2432|0.0077^C1-set|2400-2462|0.066^Ig_6|2403-2462|0.03^BiPBP_C|2403-2427|6.6^V-set_CD47|2419-2469|0.96^C2-set|2434-2461|0.5^Herpes_gI|2440-2474|0.039^Izumo-Ig|2441-2462|0.32^V-set|2442-2468|0.0016^Ig_3|2477-2553|1.2e-19^C2-set_2|2478-2524|4.2e-06^I-set|2484-2567|1.5e-21^Ig_2|2485-2567|1.4e-14^ig|2488-2565|4.2e-13^V-set|2488-2567|0.00021^C1-set|2493-2544|0.0034^Ig_C17orf99|2493-2568|0.3^V-set_CD47|2495-2554|0.63^Ig_6|2495-2555|0.0098^BiPBP_C|2495-2526|0.026^C2-set|2495-2568|0.11^I-set|2581-2663|8.4e-18^Ig_3|2581-2650|3.5e-17^ig|2583-2653|1.3e-08^Ig_2|2590-2656|5e-14^C1-set|2590-2618|0.051^BiPBP_C|2595-2634|0.059^C2-set_2|2598-2631|0.0012^Ig_6|2606-2648|0.58^Herpes_gE_N|2629-2649|3.4^V-set|2630-2663|0.035^V-set_CD47|2630-2663|0.054^Izumo-Ig|2637-2663|5.5^Ig_3|2680-2749|1e-17^ig|2680-2756|4.7e-10^I-set|2681-2762|2.1e-22^C1-set|2681-2720|0.49^C2-set_2|2685-2717|0.0047^Ig_2|2686-2760|1.1e-10^V-set_CD47|2688-2750|0.013^BiPBP_C|2697-2718|1.1^Ig_6|2706-2748|0.0017^Receptor_2B4|2706-2752|0.0098^Izumo-Ig|2716-2749|4.5^V-set|2718-2749|0.0022^Herpes_gI|2718-2744|2.2^C2-set|2728-2765|1.3^I-set|2789-2865|7.6e-17^Ig_3|2789-2852|3.2e-15^Ig_2|2789-2861|3.3e-12^ig|2789-2858|6.7e-08^C2-set_2|2801-2820|0.0023^BiPBP_C|2804-2828|0.29^C1-set|2805-2820|9.4^V-set_CD47|2808-2854|2.7^Receptor_2B4|2809-2855|1.9^Herpes_gI|2821-2850|4.3^Ig_6|2828-2850|4.1^Izumo-Ig|2830-2866|0.098^C2-set|2831-2866|7.4^Herpes_gE_N|2832-2867|4.3^V-set|2833-2867|0.016^I-set|2879-2960|5.3e-17^Ig_3|2879-2947|7.9e-14^ig|2880-2957|1.6e-08^C2-set_2|2881-2915|0.0027^Ig_2|2884-2959|9.6e-08^V-set_CD47|2906-2960|8.5^Receptor_2B4|2906-2952|3.2^Ig_6|2908-2946|0.035^C2-set|2914-2949|0.56^V-set|2928-2961|0.094^Ig_C17orf99|2933-2954|0.85^A2M|2942-2985|0.2^Ig_3|2963-3039|4.8e-17^I-set|2970-3052|1e-18^ig|2971-3049|8.1e-09^V-set|2971-3004|0.28^Ig_2|2975-3052|4.4e-12^C2-set_2|2976-3020|0.00034^V-set_CD47|2977-3052|0.0076^C1-set|2979-3011|0.0019^V-set|3019-3052|0.063^Receptor_2B4|3020-3049|8.7^A2M|3034-3069|1.5^Ig_3|3055-3134|1.4e-17^I-set|3065-3147|1.5e-20^V-set|3068-3147|0.00043^Ig_C17orf99|3068-3148|0.04^Ig_2|3069-3146|3.8e-13^ig|3069-3135|8e-10^Izumo-Ig|3070-3132|2.6^C2-set_2|3074-3105|0.00081^V-set_CD47|3076-3137|0.13^C1-set|3076-3130|0.51^Ig_6|3079-3132|0.00032^BiPBP_C|3089-3104|3.4^Receptor_2B4|3090-3147|0.062^Herpes_gI|3110-3143|0.056^C2-set|3111-3148|4.8^Ig_3|3150-3228|1.7e-19^BiPBP_C|3150-3194|7.4^C2-set_2|3153-3230|0.00023^Ig_2|3162-3235|1.1e-10^C1-set|3165-3224|0.0057^I-set|3166-3240|6e-18^ig|3166-3236|3.2e-11^V-set_CD47|3166-3232|0.0011^Ig_C17orf99|3166-3235|0.08^Ig_6|3199-3226|1.5^C2-set|3199-3229|1.6^V-set|3207-3236|0.1^Receptor_2B4|3207-3238|0.75^Herpes_gE_N|3207-3236|2.7^A2M|3222-3251|1.6^Herpes_gE_N|3243-3322|0.55^I-set|3252-3336|5.2e-22^Ig_3|3253-3323|8.9e-20^ig|3253-3330|4e-10^V-set|3253-3337|0.0002^C1-set|3260-3321|0.005^Ig_2|3261-3328|2.3e-09^C2-set_2|3261-3304|0.00028^Ig_C17orf99|3261-3337|0.3^BiPBP_C|3262-3293|0.21^V-set_CD47|3269-3336|0.14^Ig_6|3279-3321|1.7^C2-set|3295-3337|3.4^I-set|3353-3430|2.8e-17^Ig_3|3354-3417|2.8e-13^ig|3355-3425|1.8e-08^C2-set_2|3357-3383|0.0021^Ig_2|3358-3421|3.1e-08^V-set|3398-3430|0.015^Ig_C17orf99|3401-3432|0.12^I-set|3443-3523|9.5e-19^ig|3443-3519|1.2e-10^Ig_3|3444-3510|7.1e-14^Ig_2|3445-3523|1e-10^C2-set_2|3455-3483|0.0026^BiPBP_C|3463-3478|9.4^Herpes_gI|3482-3523|3^Ig_6|3483-3509|0.68^Receptor_2B4|3487-3521|0.75^Izumo-Ig|3487-3509|4.5^V-set|3489-3523|0.059^V-set_CD47|3490-3523|0.12^C2-set|3490-3513|0.22^A2M|3504-3546|0.27^Ig_3|3526-3602|2.7e-17^BiPBP_C|3526-3577|0.017^C2-set_2|3528-3592|4e-05^ig|3534-3608|1.4e-10^I-set|3536-3615|1.2e-15^V-set|3536-3567|2.3^Ig_2|3540-3612|2.3e-10^C1-set|3543-3574|0.31^Herpes_gI|3576-3598|2.5^Ig_6|3580-3600|0.77^V-set|3584-3616|0.0042^C2-set|3584-3607|1.4^Ig_3|3620-3696|4e-16^I-set|3626-3709|6.3e-18^ig|3628-3707|1.2e-10^Ig_2|3631-3709|1e-09^C2-set_2|3634-3663|0.00044^C1-set|3634-3664|0.55^Ig_C17orf99|3635-3706|0.07^V-set_CD47|3636-3698|0.23^BiPBP_C|3638-3666|0.91^V-set|3676-3709|0.037^A2M|3690-3718|2.2^Ig_3|3712-3787|1.2e-16^I-set|3713-3800|3.2e-17^ig|3719-3794|1.9e-07^C2-set_2|3727-3759|0.00068^Ig_2|3728-3799|2.3e-08^V-set_CD47|3731-3801|3.5^BiPBP_C|3731-3758|2^Herpes_gI|3748-3783|3.9^V-set|3757-3801|0.0001^Receptor_2B4|3757-3791|0.036^Ig_6|3761-3786|0.058^Ig_C17orf99|3776-3799|3.3^Ig_3|3803-3880|1.1e-15^Ig_2|3804-3893|1.2e-11^I-set|3805-3893|3.6e-16^C2-set_2|3806-3867|0.0026^ig|3810-3885|8.8e-08^V-set_CD47|3814-3893|0.1^C1-set|3818-3880|0.048^BiPBP_C|3820-3855|9^Ig_6|3838-3879|8.2^C2-set|3845-3893|0.15^V-set|3857-3893|8.4e-05^Ig_3|3896-3971|2.1e-15^I-set|3897-3984|3.7e-14^Ig_2|3897-3976|3.7e-10^ig|3907-3979|8.7e-09^C2-set_2|3912-3936|0.086^V-set|3946-3985|0.009^Ig_6|3947-3972|0.36^V-set_CD47|3955-3984|1.7^Ig_C17orf99|3964-3983|5.7^Ig_3|3987-4062|4.3e-18^I-set|3988-4075|1.3e-15^Ig_2|3988-4070|2.7e-10^C2-set_2|3989-4033|0.12^ig|3994-4065|1.9e-10^V-set_CD47|4002-4075|3.9^Ig_C17orf99|4009-4067|1.5^V-set|4030-4075|0.0012^Ig_6|4033-4076|0.14^Izumo-Ig|4049-4079|0.23^Ig_3|4078-4152|1.1e-18^I-set|4079-4165|4.6e-19^Ig_2|4079-4165|1.3e-12^ig|4086-4163|6.2e-14^C1-set|4093-4122|0.92^V-set_CD47|4094-4166|0.068^BiPBP_C|4095-4125|2.5^C2-set_2|4096-4122|0.00047^Ig_C17orf99|4096-4165|0.044^Ig_6|4118-4170|0.21^V-set|4126-4166|3.4e-05^Izumo-Ig|4132-4169|0.073^Ig_3|4168-4243|5.6e-16^Ig_2|4169-4256|4.4e-12^I-set|4170-4256|2.6e-16^ig|4177-4253|1.1e-09^C2-set_2|4179-4209|0.043^V-set_CD47|4184-4258|0.077^V-set|4221-4257|3.5e-05^Ig_6|4224-4243|6.5^Izumo-Ig|4224-4260|0.095^C2-set|4226-4247|2.3^Ig_C17orf99|4236-4255|3.5^I-set|4260-4339|4.2e-18^Ig_3|4260-4332|1e-17^V-set|4266-4297|1.8^ig|4268-4336|2.3e-13^Ig_2|4271-4334|7.7e-11^C2-set_2|4273-4310|1.5^Ig_C17orf99|4273-4335|0.15^V-set_CD47|4291-4333|0.014^Ig_6|4307-4333|0.042^V-set|4308-4330|0.0038^C2-set|4310-4333|0.085^Izumo-Ig|4310-4331|0.21^Receptor_2B4|4311-4342|2.2^Herpes_gE_N|4311-4335|1.9^Ig_3|4348-4423|5.6e-16^ig|4363-4434|8.6e-12^I-set|4364-4435|1.5e-17^Ig_2|4364-4436|1.6e-09^C2-set_2|4366-4390|0.16^V-set_CD47|4371-4436|0.0014^V-set|4397-4435|0.0025^Receptor_2B4|4400-4429|3.7^Ig_C17orf99|4403-4436|0.79^Ig_3|4439-4513|1.9e-18^Ig_2|4440-4513|6.1e-11^I-set|4442-4525|2e-17^ig|4445-4522|2.4e-12^C2-set_2|4445-4480|0.00036^V-set|4448-4479|0.041^C1-set|4453-4482|5^TSP_1|4533-4583|7.4e-17^TSP1_spondin|4533-4583|9.8e-13^TSP1_ADAMTS|4537-4583|2e-06^TSP_1|4590-4640|1.6e-15^TSP1_spondin|4590-4640|5.4e-09^TSP1_ADAMTS|4594-4640|0.00015^TSP_1|4647-4697|8.5e-14^TSP1_spondin|4647-4697|9.6e-10^TSP1_ADAMTS|4650-4697|3.9e-07^TSP1_spondin|4705-4754|2.1e-09^TSP_1|4706-4754|1.1e-13^TSP1_ADAMTS|4708-4754|8.2e-05^TSP_1|4761-4811|5.7e-12^TSP1_spondin|4761-4811|1.3e-09^TSP1_ADAMTS|4765-4811|0.015^TSP1_spondin|4818-4868|2.7e-10^TSP_1|4819-4868|1.6e-13^TSP1_ADAMTS|4822-4868|6.3e-05^G2F|4870-5051|3.2e-55^cEGF|5091-5110|0.026^FXa_inhibition|5091-5102|4.9^EGF_CA|5107-5145|2.2e-07^EGF|5111-5136|5.6e-05^FXa_inhibition|5116-5145|1e-08^EGF_3|5120-5145|1.5^hEGF|5120-5135|0.64^cEGF|5128-5150|2e-11^EGF_CA|5147-5190|5.1e-13^FXa_inhibition|5151-5190|0.17^EGF_3|5151-5190|0.00015^hEGF|5163-5174|1.1^cEGF|5170-5195|1.2e-07^EGF_CA|5192-5228|3.2e-09^EGF|5196-5223|0.0042^FXa_inhibition|5201-5224|0.01^EGF_3|5203-5228|0.00018^hEGF|5205-5221|0.08^cEGF|5212-5233|2.8e-08^EGF_CA|5230-5270|1.3e-08^FXa_inhibition|5234-5270|0.03^EGF|5234-5255|5.5^EGF_3|5237-5255|0.037^hEGF|5245-5255|0.89^cEGF|5251-5275|2.4e-05^EGF_CA|5272-5313|5.2e-15^FXa_inhibition|5276-5313|3.5e-05^EGF_3|5276-5309|2e-08^EGF|5276-5304|0.00036^hEGF|5286-5304|0.00069^cEGF|5295-5318|1.1e-08^EGF_CA|5315-5354|3.6e-10^FXa_inhibition|5319-5354|4.6e-10^EGF|5319-5344|0.0001^EGF_3|5329-5354|2.8e-05^hEGF|5329-5344|1.8e-05^cEGF|5336-5354|4e-05^cEGF|5418-5435|0.013^EGF_CA|5432-5470|2.5e-10^EGF|5436-5462|6.9e-06^FXa_inhibition|5438-5470|6.8e-08^EGF_3|5444-5470|0.00091^hEGF|5445-5461|5.8e-05^cEGF|5452-5475|1.3e-14^EGF_CA|5472-5516|7.2e-10^FXa_inhibition|5476-5508|7.2^EGF_3|5476-5508|0.00062^Ig_3|5486-5499|8.7^hEGF|5487-5499|2.8 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:179.34Mb] 11 8 11 3.52 ONLY_REF_SPLICE YES_LDAS 0.1271 GT 1.9219 AG 1.5628 ENST00000361521.9 1-143 ENST00000271588.9 1829-16908 chr1|-|[1]6393257-6393399[0]<==>chr1|+|[1]185962518-185962659[1]|[2]185963768-185963895[0]|[1]185965802-185965915[0]|[1]185970335-185970493[0]|[1]185977787-185977981[0]|[1]185980978-185981073[0]|[1]185982262-185982389[2]|[0]185984169-185984313[0]|[1]185987432-185987544[2]|[0]185989488-185989647[0]|[1]185990275-185990443[1]|[2]185993182-185993309[0]|[1]185994815-185995087[0]|[1]185997429-185997524[0]|[1]186000045-186000239[0]|[1]186001298-186001428[2]|[0]186001594-186001741[0]|[1]186003718-186003844[1]|[2]186007128-186007282[0]|[1]186015159-186015437[0]|[1]186015958-186016239[0]|[1]186016963-186017071[1]|[2]186018183-186018352[0]|[1]186019541-186019695[2]|[0]186023030-186023153[0]|[1]186037934-186038035[0]|[1]186038829-186039005[0]|[1]186039728-186039879[2]|[0]186041013-186041136[0]|[1]186045688-186045863[2]|[0]186048743-186048839[0]|[1]186052952-186053074[0]|[1]186053825-186053986[0]|[1]186055393-186055674[0]|[1]186057234-186057401[0]|[1]186061851-186061964[0]|[1]186062514-186062600[0]|[1]186065238-186065429[0]|[1]186067834-186068007[0]|[1]186069663-186069776[0]|[1]186070612-186070757[2]|[0]186074741-186074891[0]|[1]186076428-186076622[0]|[1]186078107-186078220[0]|[1]186081207-186081394[2]|[0]186082865-186082961[0]|[1]186086246-186086407[0]|[1]186087217-186087330[0]|[1]186087443-186087645[2]|[0]186087932-186088013[0]|[1]186088145-186088276[0]|[1]186088606-186088755[0]|[1]186090758-186090917[1]|[2]186093134-186093258[0]|[1]186093486-186093669[1]|[2]186094276-186094373[0]|[1]186095243-186095521[0]|[1]186103472-186103668[2]|[0]186106884-186106965[0]|[1]186108461-186108597[2]|[0]186112812-186112953[0]|[1]186113979-186114123[1]|[2]186114819-186114946[0]|[1]186115258-186115414[1]|[2]186116994-186117115[0]|[1]186117459-186117623[0]|[1]186119191-186119298[0]|[1]186119745-186119882[0]|[1]186120011-186120145[0]|[1]186122951-186123220[0]|[1]186125604-186125794[2]|[0]186128078-186128291[0]|[1]186129966-186130100[0]|[1]186130507-186130697[2]|[0]186132328-186132409[0]|[1]186136668-186136937[0]|[1]186137498-186137668[0]|[1]186137802-186137972[0]|[1]186144173-186144343[0]|[1]186144533-186144703[0]|[1]186145403-186145573[0]|[1]186145753-186145923[0]|[1]186151200-186151349[0]|[1]186151606-186151743[0]|[1]186152750-186152871[2]|[0]186153750-186153987[0]|[1]186165111-186165173[0]|[1]186166184-186166303[0]|[1]186166808-186166942[0]|[1]186171337-186171450[0]|[1]186172006-186172131[0]|[1]186174514-186174642[0]|[1]186178416-186178766[0]|[1]186182168-186182287[0]|[1]186187883-186188009[1]|[2]186189512-186189878[2] atggcgcggcccgggctcattcattccgcgccgggcctgccagacacctgcgcccttctgcagccgcccgccgcatccgccgccgcagcccccagcatgtcgggcccagacgtcgagacgccgtccgccatccagatctgccgAACCACCCAAAGTCACTGTGATGCCCAAGAATCAGTCTTTCACAGGAGGGTCTGAGGTCTCCATCATGTGTTCTGCAACAGGTTATCCCAAACCAAAGATTGCCTGGACCGTTAACGATATGTTTATCGTGGGTTCACACAGGTATAGGATGACCTCAGATGGTACCTTATTTATCAAAAATGCAGCTCCCAAAGATGCAGGGATCTATGGTTGCCTAGCAAGTAATTCAGCTGGAACAGATAAACAGAATTCTACTCTCAGATACATTGAAGCCCCTAAGTTGATGGTAGTTCAGAGTGAGCTCTTGGTTGCCCTTGGGGATATAACCGTTATGGAATGCAAAACCTCTGGTATTCCTCCACCTCAAGTTAAATGGTTCAAAGGAGATCTTGAGTTGAGGCCCTCAACATTCCTCATTATTGACCCTCTCTTGGGACTTTTGAAGATTCAAGAAACACAAGATCTGGATGCTGGCGATTATACCTGTGTAGCCATCAATGAGGCTGGAAGAGCAACTGGCAAGATAACTCTGGATGTTGGCTCACCTCCAGTTTTCATACAAGAACCTGCTGATGTGTCTATGGAAATTGGCTCAAATGTGACATTACCTTGTTATGTTCAGGGTTATCCAGAACCAACAATCAAATGGCGAAGATTAGACAACATGCCAATTTTCTCAAGACCTTTTTCAGTTAGTTCCATCAGCCAACTAAGAACAGGAGCTCTCTTTATTTTAAACTTATGGGCAAGTGATAAAGGAACCTATATTTGTGAAGCTGAAAACCAGTTTGGAAAGATCCAGTCAGAGACAACAGTAACAGTGACCGGACTTGTTGCTCCACTTATTGGAATCAGCCCTTCAGTGGCCAATGTTATTGAAGGACAGCAGCTTACTTTGCCCTGTACTCTGTTAGCTGGAAATCCCATTCCAGAACGTCGGTGGATTAAGAATTCAGCTATGTTGCTCCAAAATCCTTACATCACTGTGCGCAGTGATGGGAGCCTCCATATTGAAAGAGTTCAGCTTCAGGATGGTGGTGAATATACTTGTGTGGCCAGTAACGTTGCTGGGACCAATAACAAAACTACCTCTGTGGTTGTGCATGTTCTGCCAACCATTCAGCATGGGCAGCAGATACTCAGTACAATTGAAGGCATTCCAGTAACTTTACCATGCAAAGCAAGTGGAAATCCCAAACCGTCTGTCATCTGGTCCAAGAAAGGAGAGCTGATTTCAACCAGCAGTGCTAAGTTTTCAGCAGGAGCTGATGGTAGTCTGTATGTGGTATCACCTGGAGGAGAGGAGAGTGGGGAGTATGTCTGCACTGCCACCAATACAGCCGGCTACGCCAAAAGGAAAGTGCAGCTAACAGTCTATGTAAGGCCCAGAGTGTTTGGAGATCAACGAGGACTGTCCCAGGATAAGCCTGTTGAGATCTCCGTCCTTGCAGGGGAAGAGGTAACACTTCCATGTGAAGTGAAGAGCTTACCTCCACCCATAATTACTTGGGCCAAAGAAACCCAGCTCATCTCACCGTTCTCTCCAAGACACACATTCCTCCCTTCTGGTTCAATGAAGATCACTGAAACCCGCACTTCAGATAGTGGGATGTATCTTTGTGTTGCCACAAATATTGCTGGGAATGTGACTCAGGCTGTCAAATTAAATGTCCATGTTCCTCCAAAGATACAGCGTGGACCTAAACATCTCAAAGTCCAAGTTGGTCAAAGAGTGGATATTCCATGTAATGCTCAAGGGACTCCTCTTCCTGTAATCACCTGGTCCAAAGGTGGAAGCACTATGCTGGTTGATGGAGAGCACCATGTTAGCAATCCAGACGGAACTTTAAGCATCGACCAAGCCACGCCCTCAGATGCTGGCATATATACATGTGTTGCTACTAACATAGCAGGCACTGATGAAACAGAGATAACGCTACATGTCCAAGAACCACCCACAGTGGAAGATCTAGAACCTCCATATAACACTACTTTCCAAGAAAGAGTGGCCAATCAACGCATTGAATTTCCATGTCCTGCAAAAGGTACCCCTAAACCAACCATCAAATGGTTACACAATGGTAGAGAGTTGACAGGCAGAGAGCCTGGCATTTCTATCTTGGAAGATGGCACATTGCTGGTTATTGCTTCTGTTACACCCTATGACAATGGGGAGTACATCTGTGTGGCAGTCAATGAAGCTGGAACCACAGAAAGAAAATATAACCTCAAAGTCCATGTTCCTCCAGTAATTAAAGATAAAGAACAAGTTACAAATGTGTCGGTGTTGTTAAATCAGCTGACCAATCTCTTCTGTGAAGTGGAAGGCACTCCATCTCCCATCATTATGTGGTATAAAGATAATGTCCAGGTGACTGAAAGCAGCACTATTCAGACTGTGAACAATGGGAAGATACTGAAGCTCTTCAGAGCCACTCCAGAGGATGCAGGAAGATATTCCTGCAAAGCAATTAATATTGCAGGCACTTCTCAGAAGTACTTTAACATTGATGTGCTAGTTCCACCCACCATAATAGGTACCAACTTCCCAAATGAAGTCTCAGTTGTCCTCAACCGTGACGTCGCCCTTGAATGCCAGGTCAAAGGCACTCCCTTTCCTGATATTCATTGGTTCAAAGATGGCAAGCCTTTATTTTTGGGCGATCCTAATGTTGAACTTCTAGACAGAGGACAAGTCTTACATTTAAAGAATGCACGGAGAAATGACAAGGGGCGCTACCAATGTACTGTGTCTAATGCAGCTGGCAAACAAGCCAAGGATATAAAACTGACTATCTATATTCCACCTAGTATTAAAGGAGGAAATGTCACCACAGACATATCAGTATTGATCAACAGCCTTATTAAACTGGAATGTGAAACACGGGGACTTCCAATGCCTGCCATTACTTGGTATAAGGACGGGCAGCCAATCATGTCCAGCTCACAAGCACTTTATATTGATAAAGGACAATATCTTCATATTCCTCGAGCACAGGTCTCTGATTCAGCAACATATACGTGTCATGTAGCCAATGTTGCTGGAACTGCTGAAAAATCATTCCATGTGGATGTCTATGTTCCTCCAATGATTGAAGGCAACTTGGCCACGCCTTTGAATAAGCAAGTAGTTATTGCTCATTCTCTGACACTGGAGTGCAAAGCTGCTGGAAACCCTTCTCCCATTCTCACCTGGTTGAAAGATGGTGTACCTGTGAAAGCTAATGACAATATCCGCATAGAAGCTGGTGGGAAGAAACTCGAAATCATGAGTGCCCAAGAAATTGATCGAGGACAGTACATATGCGTGGCTACCAGTGTGGCAGGAGAAAAGGAAATCAAATATGAAGTTGATGTCTTGGTGCCACCAGCTATAGAAGGAGGAGATGAAACATCTTACTTCATTGTGATGGTTAATAACTTACTGGAGCTAGATTGTCATGTGACAGGCTCTCCCCCACCAACTATCATGTGGCTGAAGGATGGCCAGTTAATTGATGAAAGGGATGGATTCAAGATTTTATTAAATGGACGCAAACTGGTTATTGCTCAGGCTCAAGTGTCAAACACAGGCCTTTATCGGTGCATGGCAGCAAATACTGCTGGAGACCACAAGAAGGAATTTGAAGTGACTGTTCATGTTCCTCCAACAATCAAGTCCTCAGGCCTTTCTGAGAGAGTTGTGGTAAAATACAAGCCTGTCGCCTTGCAGTGCATAGCCAATGGGATTCCAAATCCTTCCATTACATGGTTAAAAGATGACCAGCCTGTGAACACTGCCCAAGGAAACCTTAAAATACAGTCTTCTGGTCGAGTTCTACAAATTGCCAAAACCCTGTTGGAAGATGCTGGCAGATACACATGTGTGGCTACCAACGCAGCTGGAGAAACACAACAGCACATTCAACTGCATGTTCATGAACCACCTAGTCTGGAAGATGCTGGAAAAATGCTGAATGAGACTGTGTTGGTGAGCAACCCTGTACAGCTGGAGTGTAAGGCAGCTGGAAATCCTGTGCCTGTTATTACATGGTACAAAGATAATCGTCTACTCTCAGGTTCCACCAGCATGACTTTCTTGAACAGAGGACAGATCATTGATATTGAAAGTGCCCAGATCTCAGATGCTGGCATATATAAATGCGTGGCCATCAACTCAGCTGGAGCTACAGAGTTATTTTACAGTCTGCAAGTTCATGTGGCCCCATCAATTTCTGGCAGCAATAACATGGTGGCAGTGGTGGTTAATAACCCGGTGAGGTTAGAATGTGAAGCCAGAGGTATTCCTGCCCCAAGTCTGACCTGGTTGAAAGATGGGAGTCCTGTTTCTAGTTTTTCTAATGGATTACAGGTTCTCTCTGGTGGTCGAATCCTAGCATTGACCAGTGCACAAATCAGCGACACAGGAAGGTACACCTGCGTGGCAGTGAATGCTGCTGGAGAAAAGCAAAGGGACATTGACCTCCGAGTATATGTTCCGCCAAATATTATGGGAGAAGAACAGAATGTCTCTGTCCTCATTAGCCAAGCTGTGGAATTACTATGTCAAAGTGATGCTATTCCCCCACCTACTCTTACTTGGTTAAAAGACGGCCACCCCTTGCTGAAGAAACCAGGCCTCAGTATATCTGAAAATAGAAGTGTGTTAAAGATTGAAGATGCTCAGGTTCAAGACACTGGTCGTTACACTTGTGAAGCAACAAATGTTGCTGGAAAAACTGAAAAAAACTACAATGTCAACATTTGGGTCCCCCCAAATATTGGTGGTTCTGATGAACTTACTCAACTTACAGTCATTGAAGGGAATCTCATTAGTCTGTTGTGTGAATCAAGTGGTATTCCACCCCCAAATCTCATCTGGAAGAAGAAAGGCTCTCCAGTGCTGACTGATTCCATGGGGCGAGTTAGAATTTTATCTGGGGGCAGGCAATTACAAATTTCAATTGCTGAAAAGTCTGATGCAGCACTCTATTCATGTGTGGCGTCGAATGTTGCTGGGACTGCAAAGAAAGAATACAATCTGCAAGTTTACATTAGACCAACCATAACCAACAGTGGCAGCCACCCTACTGAAATTATTGTGACCCGAGGGAAGAGTATCTCCTTGGAGTGTGAGGTGCAGGGTATTCCACCACCAACAGTGACCTGGATGAAAGATGGCCACCCCTTGATCAAGGCAAAGGGAGTAGAAATACTGGATGAAGGTCACATCCTTCAGCTGAAGAACATTCATGTATCTGACACAGGCCGTTATGTGTGTGTTGCTGTGAATGTAGCAGGAATGACTGACAAAAAATATGACTTAAGTGTCCATGCTCCTCCAAGCATCATAGGAAACCACAGGTCACCTGAAAATATTAGTGTGGTAGAAAAGAACTCAGTATCTTTGACTTGTGAAGCTTCTGGAATTCCCCTGCCTTCCATAACCTGGTTCAAAGATGGGTGGCCTGTCAGCCTTAGCAATTCTGTGAGGATTCTTTCAGGAGGCAGGATGCTACGGCTGATGCAGACCACAATGGAAGATGCTGGCCAATATACTTGCGTTGTAAGGAATGCAGCTGGTGAAGAAAGAAAAATCTTTGGGCTTTCAGTATTAGTACCACCTCATATTGTGGGTGAAAATACATTGGAAGATGTGAAGGTAAAAGAGAAACAGAGTGTTACGCTGACTTGTGAAGTGACAGGGAATCCAGTGCCAGAAATTACATGGCACAAAGATGGGCAGCCCCTCCAAGAAGATGAAGCCCATCACATTATATCTGGTGGCCGTTTTCTTCAAATTACCAATGTCCAGGTGCCACACACTGGAAGATATACATGTTTGGCTTCCAGTCCAGCTGGCCACAAGAGCAGGAGCTTCAGTCTTAATGTATTTGTATCTCCTACAATTGCTGGTGTAGGTAGTGATGGCAACCCTGAAGATGTCACTGTCATCCTTAACAGCCCTACATCTTTGGTCTGTGAAGCTTATTCATATCCTCCAGCTACCATCACCTGGTTTAAGGATGGCACTCCTTTAGAATCTAACCGAAATATTCGTATTCTTCCAGGAGGCAGAACTCTGCAGATCCTCAATGCACAGGAGGACAATGCTGGAAGATACTCTTGTGTAGCCACGAATGAGGCTGGAGAAATGATAAAGCACTATGAAGTGAAGGTGTACATTCCACCCATAATCAATAAAGGGGACCTTTGGGGGCCAGGTCTTTCCCCTAAAGAAGTGAAGATCAAAGTAAACAACACTCTGACCTTGGAATGTGAAGCGTATGCAATTCCTTCTGCCTCCCTCAGCTGGTACAAGGATGGACAGCCCCTTAAATCCGATGATCATGTTAATATTGCTGCGAATGGACACACACTTCAAATAAAGGAGGCTCAAATATCAGACACCGGACGATATACTTGTGTAGCATCTAACATTGCAGGTGAAGATGAGTTGGATTTTGATGTGAATATTCAAGTTCCTCCAAGTTTTCAGAAACTCTGGGAAATAGGAAACATGCTAGATACTGGCAGGAATGGTGAAGCCAAAGATGTGATCATCAACAATCCCATTTCTCTTTACTGTGAGACAAATGCTGCTCCCCCTCCTACACTGACATGGTACAAAGATGGCCACCCTCTGACCTCAAGTGATAAAGTATTGATTTTGCCAGGAGGGCGAGTGTTGCAGATTCCTCGGGCTAAAGTAGAAGATGCTGGGAGATACACATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAATATGATGTCCGTGTACTCGTGCCGCCAATTATCAAGGGAGCAAATAGTGATCTCCCTGAAGAGGTCACCGTGCTGGTGAACAAGAGTGCACTGATAGAGTGTTTATCCAGTGGCAGCCCAGCACCAAGGAATTCCTGGCAGAAAGATGGACAGCCCTTGCTAGAAGATGACCATCATAAATTTCTATCTAATGGACGAATTCTGCAGATTCTGAATACTCAAATAACAGATATCGGCAGGTATGTGTGTGTTGCTGAGAACACAGCTGGGAGTGCCAAAAAATATTTTAACCTCAATGTTCATGTTCCTCCAAGTGTCATTGGTCCTAAATCTGAAAATCTTACCGTCGTGGTGAACAATTTCATCTCTTTGACCTGTGAGGTCTCTGGTTTTCCACCTCCTGACCTCAGCTGGCTCAAGAATGAACAGCCCATCAAACTGAACACAAATACTCTCATTGTGCCTGGTGGTCGAACTCTACAGATTATTCGGGCCAAGGTATCAGATGGTGGTGAATACACTTGTATAGCTATCAATCAAGCTGGCGAAAGCAAGAAAAAGTTTTCCCTGACTGTTTATGTGCCCCCAAGCATTAAAGACCATGACAGTGAATCTCTTTCTGTAGTTAATGTAAGAGAGGGAACTTCTGTGTCTTTGGAGTGTGAGTCGAACGCTGTGCCACCTCCAGTCATCACTTGGTATAAGAATGGGCGGATGATAACAGAGTCTACTCATGTGGAGATTTTAGCTGATGGACAAATGCTACACATTAAGAAAGCTGAGGTATCTGACACAGGCCAGTATGTATGTAGAGCTATAAATGTAGCAGGACGGGATGATAAAAATTTCCACCTCAATGTATATGTGCCACCCAGTATTGAAGGACCTGAAAGAGAAGTGATTGTGGAGACGATCAGCAATCCTGTGACATTAACATGTGATGCCACTGGGATCCCACCTCCCACGATAGCATGGTTAAAGAACCACAAGCGCATAGAAAATTCTGACTCACTGGAAGTTCGTATTTTGTCTGGAGGTAGCAAACTCCAGATTGCCCGGTCTCAGCATTCAGATAGTGGAAACTATACATGTATTGCTTCAAATATGGAGGGAAAAGCCCAGAAATATTACTTTCTTTCAATTCAAGTTCCTCCAAGTGTTGCTGGTGCTGAAATTCCAAGTGATGTCAGTGTCCTTCTAGGAGAAAATGTTGAGCTGGTCTGCAATGCAAATGGCATTCCTACTCCACTTATTCAATGGCTTAAAGATGGAAAGCCCATAGCTAGTGGTGAAACAGAAAGAATCCGAGTGAGTGCAAATGGCAGCACATTAAACATTTATGGAGCTCTTACATCTGACACGGGGAAATACACATGTGTTGCTACTAATCCCGCTGGAGAAGAAGACCGAATTTTTAACTTGAATGTCTATGTTACACCTACAATTAGGGGTAATAAAGATGAAGCAGAGAAACTAATGACTTTAGTGGATACTTCAATAAATATTGAATGCAGAGCCACAGGGACGCCTCCACCACAGATAAACTGGCTGAAGAATGGACTTCCTCTGCCTCTCTCCTCCCATATCCGGTTACTGGCAGCAGGACAAGTTATCAGGATTGTGAGAGCTCAGGTGTCTGATGTCGCTGTGTATACTTGTGTGGCCTCCAACAGAGCTGGGGTGGATAATAAGCATTACAATCTTCAAGTGTTTGCACCACCAAATATGGACAATTCAATGGGGACAGAGGAAATCACAGTTCTCAAAGGTAGTTCCACCTCTATGGCATGCATTACTGATGGAACCCCAGCTCCCAGTATGGCCTGGCTTAGAGATGGCCAGCCTCTGGGGCTTGATGCCCATCTGACAGTCAGCACCCATGGAATGGTCCTGCAGCTCCTCAAAGCAGAGACTGAAGATTCGGGAAAGTACACCTGCATTGCCTCAAATGAAGCTGGAGAAGTCAGCAAGCACTTTATCCTCAAGGTCCTAGAACCACCTCACATTAATGGATCTGAAGAACATGAAGAGATATCAGTAATTGTTAATAACCCACTTGAACTTACCTGCATTGCTTCTGGAATCCCAGCCCCTAAAATGACCTGGATGAAAGATGGCCGGCCCCTTCCACAGACGGATCAAGTGCAAACTCTAGGAGGAGGAGAGGTTCTTCGAATTTCTACTGCTCAGGTGGAGGATACAGGAAGATATACATGTCTGGCATCCAGTCCTGCAGGAGATGATGATAAGGAATATCTAGTGAGAGTGCATGTACCTCCTAATATTGCTGGAACTGATGAGCCCCGGGATATCACTGTGTTACGGAACAGACAAGTGACATTGGAATGCAAGTCAGATGCAGTGCCCCCACCTGTAATTACTTGGCTCAGAAATGGAGAACGGTTACAGGCAACACCTCGAGTGCGAATCCTATCTGGAGGGAGATACTTGCAAATCAACAATGCTGACCTAGGTGATACAGCCAATTATACCTGTGTTGCCAGCAACATTGCAGGAAAGACTACAAGAGAATTTATTCTCACTGTAAATGTTCCTCCAAACATAAAGGGGGGCCCCCAGAGCCTTGTAATTCTTTTAAATAAGTCAACTGTATTGGAATGCATCGCTGAAGGTGTGCCAACTCCAAGGATAACATGGAGAAAGGATGGAGCTGTTCTAGCTGGGAATCATGCAAGATATTCCATCTTGGAAAATGGATTCCTTCATATTCAATCAGCACATGTCACTGACACTGGACGGTATTTGTGTATGGCCACCAATGCTGCTGGAACAGATCGCAGGCGAATAGATTTACAGGTCCATGTTCCTCCATCTATTGCTCCGGGTCCTACCAACATGACTGTAATAGTAAATGTTCAAACTACTCTGGCTTGTGAGGCTACTGGGATACCAAAACCATCAATCAATTGGAGAAAAAATGGGCATCTTCTTAATGTGGATCAAAATCAGAACTCATACAGGCTCCTTTCTTCAGGTTCACTAGTAATTATTTCCCCTTCTGTGGATGACACTGCAACCTATGAATGTACTGTGACAAACGGTGCTGGAGATGATAAAAGAACTGTGGATCTCACTGTCCAAGTTCCACCTTCCATAGCTGATGAGCCTACAGATTTCCTAGTAACCAAACATGCCCCAGCAGTAATTACCTGCACTGCTTCGGGAGTTCCATTTCCCTCAATTCACTGGACCAAAAATGGTATAAGACTGCTTCCCAGGGGAGATGGCTATAGAATTCTGTCCTCAGGAGCAATTGAAATACTTGCCACCCAATTAAACCATGCTGGAAGATACACTTGTGTCGCTAGGAATGCGGCTGGCTCTGCACATCGACACGTGACCCTTCATGTTCATGAGCCTCCAGTCATTCAGCCCCAACCAAGTGAACTACACGTCATTCTGAACAATCCTATTTTATTACCATGTGAAGCAACAGGGACACCCAGTCCTTTCATTACTTGGCAAAAAGAAGGCATCAATGTTAACACTTCAGGCAGAAACCATGCAGTTCTTCCTAGTGGCGGCTTACAGATCTCCAGAGCTGTCCGAGAGGATGCTGGCACTTACATGTGTGTGGCCCAGAACCCGGCTGGTACAGCCTTGGGCAAAATCAAGTTAAATGTCCAAGTTCCTCCAGTCATTAGCCCTCATCTAAAGGAATATGTTATTGCTGTGGACAAGCCCATCACGTTATCCTGTGAAGCAGATGGCCTCCCTCCGCCTGACATTACATGGCATAAAGATGGGCGTGCAATTGTGGAATCTATCCGCCAGCGCGTCCTCAGCTCTGGCTCTCTGCAAATAGCATTTGTCCAGCCTGGTGATGCTGGCCATTACACGTGCATGGCAGCCAATGTAGCAGGATCAAGCAGCACAAGCACCAAGCTCACCGTCCATGTACCACCCAGGATCAGAAGTACAGAAGGACACTACACGGTCAATGAGAATTCACAAGCCATTCTTCCATGCGTAGCTGATGGAATCCCCACACCAGCAATTAACTGGAAAAAAGACAATGTTCTTTTAGCTAACTTGTTAGGAAAATACACTGCTGAACCATATGGAGAACTCATTTTAGAAAATGTTGTGCTGGAGGATTCTGGCTTCTATACCTGTGTTGCTAACAATGCTGCAGGTGAAGATACACACACTGTCAGCCTGACTGTGCATGTTCTCCCCACTTTTACTGAACTTCCTGGAGACGTGTCATTAAATAAAGGAGAACAGCTACGATTAAGCTGTAAAGCTACTGGTATTCCATTGCCCAAATTAACATGGACCTTCAATAACAATATTATTCCAGCCCACTTTGACAGTGTGAATGGACACAGTGAACTTGTTATTGAAAGAGTGTCAAAAGAGGATTCAGGTACTTATGTGTGCACCGCAGAGAACAGCGTTGGCTTTGTGAAGGCAATTGGATTTGTTTATGTGAAAGAACCTCCAGTCTTCAAAGGTGATTATCCTTCTAACTGGATTGAACCACTTGGTGGGAATGCAATCCTGAATTGTGAGGTGAAAGGAGACCCCACCCCAACCATCCAGTGGAACAGAAAGGGAGTGGATATTGAAATTAGCCACAGAATCCGGCAACTGGGCAATGGCTCCCTGGCCATCTATGGCACTGTTAATGAAGATGCCGGTGACTATACATGTGTAGCTACCAATGAAGCTGGGGTGGTGGAGCGCAGCATGAGTCTGACTCTGCAAAGTCCTCCTATTATCACTCTTGAGCCAGTGGAAACTGTTATTAATGCTGGTGGCAAAATCATATTGAATTGTCAGGCAACTGGAGAGCCTCAACCAACCATTACATGGTCCCGTCAAGGGCACTCTATTTCCTGGGATGACCGGGTTAACGTGTTGTCCAACAACTCATTATATATTGCTGATGCTCAGAAAGAAGATACCTCTGAATTTGAATGTGTTGCTCGAAACTTAATGGGTTCTGTCCTTGTCAGAGTGCCAGTCATAGTCCAGGTTCATGGTGGATTTTCCCAGTGGTCTGCATGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAAGAGGAGTCGTCTGTGCAACCAGCCCCTTCCAGCCAATGGTGGGAAGCCCTGCCAAGGTTCAGATTTGGAAATGCGAAACTGTCAAAATAAGCCTTGTCCAGTGGATGGTAGCTGGTCGGAATGGAGTCTTTGGGAAGAATGCACAAGGAGCTGTGGACGCGGCAACCAAACCAGGACCAGGACTTGCAATAATCCATCAGTTCAGCATGGTGGGCGGCCATGTGAAGGGAATGCTGTGGAAATAATTATGTGCAACATTAGGCCTTGCCCAGTTCATGGAGCATGGAGCGCTTGGCAGCCTTGGGGAACATGCAGCGAAAGTTGTGGGAAAGGTACTCAGACAAGAGCAAGACTTTGTAATAACCCACCACCAGCGTTTGGTGGGTCCTACTGTGATGGAGCAGAAACACAGATGCAAGTTTGCAATGAAAGAAATTGTCCAATTCATGGCAAGTGGGCGACTTGGGCCAGTTGGAGTGCCTGTTCTGTGTCATGTGGAGGAGGTGCCAGACAGAGAACAAGGGGCTGCTCCGACCCTGTGCCCCAGTATGGAGGAAGGAAATGCGAAGGGAGTGATGTCCAGAGTGATTTTTGCAACAGTGACCCTTGCCCAACCCATGGTAACTGGAGTCCTTGGAGTGGCTGGGGAACATGCAGCCGGACGTGTAACGGAGGGCAGATGCGGCGGTACCGCACATGTGATAACCCTCCTCCCTCCAATGGGGGAAGAGCTTGTGGGGGACCAGACTCCCAGATCCAGAGGTGCAACACTGACATGTGTCCTGTGGATGGAAGTTGGGGAAGCTGGCATAGTTGGAGCCAGTGCTCTGCCTCCTGTGGAGGAGGTGAAAAGACTCGGAAGCGGCTGTGCGACCATCCTGTGCCAGTTAAAGGTGGCCGTCCCTGTCCCGGAGACACTACTCAGGTGACCAGGTGCAATGTACAAGCATGTCCAGGTGGGCCCCAGCGAGCCAGAGGAAGTGTTATTGGAAATATTAATGATGTTGAATTTGGAATTGCTTTCCTTAATGCCACAATAACTGATAGCCCTAACTCTGATACTAGAATAATACGTGCCAAAATTACCAATGTACCTCGTAGTCTTGGTTCAGCAATGAGAAAGATAGTTTCTATTCTAAATCCCATTTATTGGACAACAGCAAAGGAAATAGGAGAAGCAGTCAATGGCTTTACCCTCACCAATGCAGTCTTCAAAAGAGAAACTCAAGTGGAATTTGCAACTGGAGAAATCTTGCAGATGAGTCATATTGCCCGGGGCTTGGATTCCGATGGTTCTTTGCTGCTAGATATCGTTGTGAGTGGCTATGTCCTACAGCTTCAGTCACCTGCTGAAGTCACTGTAAAGGATTACACAGAGGACTACATTCAAACAGGTCCTGGGCAGCTGTACGCCTACTCAACCCGGCTGTTCACCATTGATGGCATCAGCATCCCATACACATGGAACCACACCGTTTTCTATGATCAGGCACAGGGAAGAATGCCTTTCTTGGTTGAAACACTTCATGCATCCTCTGTGGAATCTGACTATAACCAGATAGAAGAGACACTGGGTTTTAAAATTCATGCTTCAATATCCAAAGGAGATCGCAGTAATCAGTGCCCCTCCGGGTTTACCTTAGACTCAGTTGGACCTTTTTGTGCTGATGAGGATGAATGTGCAGCAGGGAATCCCTGCTCCCATAGCTGCCACAATGCCATGGGGACTTACTACTGCTCCTGCCCTAAAGGCCTCACCATAGCTGCAGATGGAAGAACTTGTCAAGATATTGATGAGTGTGCTTTGGGTAGGCATACCTGCCACGCTGGTCAGGACTGTGACAATACGATTGGATCTTATCGCTGTGTGGTCCGTTGTGGAAGTGGCTTTCGAAGAACCTCTGATGGGCTGAGTTGTCAAGATATTAATGAATGTCAAGAATCCAGCCCCTGTCACCAGCGCTGTTTCAATGCCATAGGAAGTTTCCATTGTGGATGTGAACCTGGGTATCAGCTCAAAGGCAGAAAATGCATGGATGTGAACGAGTGTAGACAAAATGTATGCAGACCAGATCAGCACTGTAAGAACACCCGTGGTGGCTATAAGTGCATTGATCTTTGTCCAAATGGAATGACCAAGGCAGAAAATGGAACCTGTATTGATATTGATGAATGTAAAGATGGGACCCATCAGTGCAGATATAACCAGATATGTGAGAATACAAGAGGCAGCTATCGTTGTGTATGCCCAAGAGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCATGGACATTAATGAATGTGAACAAGTGCCTAAACCTTGTGCACATCAGTGCTCCAACACCCCCGGCAGCTTCAAGTGTATCTGTCCACCAGGACAACATTTATTAGGGGACGGGAAATCTTGCGCTGGATTGGAGAGGCTGCCAAATTATGGCACTCAATACAGTAGCTATAACCTTGCACGGTTCTCCCCTGTGAGAAACAACTATCAACCTCAACAGCATTACAGACAGTACTCACATCTCTACAGCTCCTACTCAGAGTATAGAAACAGCAGAACATCTCTCTCCAGGACTAGAAGGACTATTAGGAAAACTTGCCCTGAAGGCTCTGAGGCAAGCCATGACACATGTGTAGATATTGATGAATGTGAAAATACAGATGCCTGCCAGCATGAGTGTAAGAATACCTTTGGAAGTTATCAGTGCATCTGCCCACCTGGCTATCAACTCACACACAATGGAAAGACATGCCAAGATATCGATGAATGTCTGGAGCAGAATGTGCACTGTGGACCCAATCGCATGTGCTTCAACATGAGAGGAAGCTACCAGTGCATCGATACACCCTGTCCACCCAACTACCAACGGGATCCTGTTTCAGGGTTCTGCCTCAAGAACTGTCCACCCAATGATTTGGAATGTGCCTTGAGCCCATATGCCTTGGAATACAAACTCGTCTCCCTCCCATTTGGAATAGCCACCAATCAAGATTTAATCCGGCTGGTTGCATACACACAGGATGGAGTGATGCATCCCAGGACAACTTTCCTCATGGTAGATGAGGAACAGACTGTTCCTTTTGCCTTGAGGGATGAAAACCTGAAAGGAGTGGTGTATACAACACGACCACTACGAGAAGCAGAGACCTACCGCATGAGGGTCCGAGCCTCATCCTACAGTGCCAATGGGACCATTGAATATCAGACCACATTCATAGTTTATATAGCTGTGTCCGCCTATCCATACTAA MARPGLIHSAPGLPDTCALLQPPAASAAAAPSMSGPDVETPSAIQICRTTQSHCDAQESVFHRRV*GLHHVFCNRLSQTKDCLDR*RYVYRGFTQV*DDLRWYLIYQKCSSQRCRDLWLPSK*FSWNR*TEFYSQIH*SP*VDGSSE*ALGCPWGYNRYGMQNLWYSSTSS*MVQRRS*VEALNIPHY*PSLGTFEDSRNTRSGCWRLYLCSHQ*GWKSNWQDNSGCWLTSSFHTRTC*CVYGNWLKCDITLLCSGLSRTNNQMAKIRQHANFLKTFFS*FHQPTKNRSSLYFKLMGK**RNLYL*S*KPVWKDPVRDNSNSDRTCCSTYWNQPFSGQCY*RTAAYFALYSVSWKSHSRTSVD*EFSYVAPKSLHHCAQ*WEPPY*KSSASGWW*IYLCGQ*RCWDQ*QNYLCGCACSANHSAWAADTQYN*RHSSNFTMQSKWKSQTVCHLVQERRADFNQQC*VFSRS*W*SVCGITWRRGEWGVCLHCHQYSRLRQKESAANSLCKAQSVWRSTRTVPG*AC*DLRPCRGRGNTSM*SEELTSTHNYLGQRNPAHLTVLSKTHIPPFWFNEDH*NPHFR*WDVSLCCHKYCWECDSGCQIKCPCSSKDTAWT*TSQSPSWSKSGYSM*CSRDSSSCNHLVQRWKHYAG*WRAPC*QSRRNFKHRPSHALRCWHIYMCCY*HSRH**NRDNATCPRTTHSGRSRTSI*HYFPRKSGQSTH*ISMSCKRYP*TNHQMVTQW*RVDRQRAWHFYLGRWHIAGYCFCYTL*QWGVHLCGSQ*SWNHRKKI*PQSPCSSSN*R*RTSYKCVGVVKSADQSLL*SGRHSISHHYVV*R*CPGD*KQHYSDCEQWEDTEALQSHSRGCRKIFLQSN*YCRHFSEVL*H*CASSTHHNRYQLPK*SLSCPQP*RRP*MPGQRHSLS*YSLVQRWQAFIFGRS*C*TSRQRTSLTFKECTEK*QGALPMYCV*CSWQTSQGYKTDYLYST*Y*RRKCHHRHISIDQQPY*TGM*NTGTSNACHYLV*GRAANHVQLTSTLY**RTISSYSSSTGL*FSNIYVSCSQCCWNC*KIIPCGCLCSSND*RQLGHAFE*ASSYCSFSDTGVQSCWKPFSHSHLVERWCTCES**QYPHRSWWEETRNHECPRN*SRTVHMRGYQCGRRKGNQI*S*CLGATSYRRRR*NILLHCDG**LTGARLSCDRLSPTNYHVAEGWPVN**KGWIQDFIKWTQTGYCSGSSVKHRPLSVHGSKYCWRPQEGI*SDCSCSSNNQVLRPF*ESCGKIQACRLAVHSQWDSKSFHYMVKR*PACEHCPRKP*NTVFWSSSTNCQNPVGRCWQIHMCGYQRSWRNTTAHSTACS*TT*SGRCWKNAE*DCVGEQPCTAGV*GSWKSCACYYMVQR*SSTLRFHQHDFLEQRTDH*Y*KCPDLRCWHI*MRGHQLSWSYRVILQSASSCGPINFWQQ*HGGSGG**PGEVRM*SQRYSCPKSDLVERWESCF*FF*WITGSLWWSNPSIDQCTNQRHRKVHLRGSECCWRKAKGH*PPSICSAKYYGRRTECLCPH*PSCGITMSK*CYSPTYSYLVKRRPPLAEETRPQYI*K*KCVKD*RCSGSRHWSLHL*SNKCCWKN*KKLQCQHLGPPKYWWF**TYSTYSH*RESH*SVV*IKWYSTPKSHLEEERLSSAD*FHGAS*NFIWGQAITNFNC*KV*CSTLFMCGVECCWDCKERIQSASLH*TNHNQQWQPPY*NYCDPREEYLLGV*GAGYSTTNSDLDERWPPLDQGKGSRNTG*RSHPSAEEHSCI*HRPLCVCCCECSRND*QKI*LKCPCSSKHHRKPQVT*KY*CGRKELSIFDL*SFWNSPAFHNLVQRWVACQP*QFCEDSFRRQDATADADHNGRCWPIYLRCKECSW*RKKNLWAFSISTTSYCG*KYIGRCEGKRETECYADL*SDRESSARNYMAQRWAAPPRR*SPSHYIWWPFSSNYQCPGATHWKIYMFGFQSSWPQEQELQS*CICISYNCWCR**WQP*RCHCHP*QPYIFGL*SLFISSSYHHLV*GWHSFRI*PKYSYSSRRQNSADPQCTGGQCWKILLCSHE*GWRNDKAL*SEGVHSTHNQ*RGPLGARSFP*RSEDQSKQHSDLGM*SVCNSFCLPQLVQGWTAP*IR*SC*YCCEWTHTSNKGGSNIRHRTIYLCSI*HCR*R*VGF*CEYSSSSKFSETLGNRKHARYWQEW*SQRCDHQQSHFSLL*DKCCSPSYTDMVQRWPPSDLK**SIDFARRASVADSSG*SRRCWEIHMCGCE*GWRRFPSI*CPCTRAANYQGSK**SP*RGHRAGEQECTDRVFIQWQPSTKEFLAERWTALARR*PS*ISI*WTNSADSEYSNNRYRQVCVCC*EHSWECQKIF*PQCSCSSKCHWS*I*KSYRRGEQFHLFDL*GLWFSTS*PQLAQE*TAHQTEHKYSHCAWWSNSTDYSGQGIRWW*IHLYSYQSSWRKQEKVFPDCLCAPKH*RP*Q*ISFCS*CKRGNFCVFGV*VERCATSSHHLV*EWADDNRVYSCGDFS*WTNATH*ES*GI*HRPVCM*SYKCSRTG**KFPPQCICATQY*RT*KRSDCGDDQQSCDINM*CHWDPTSHDSMVKEPQAHRKF*LTGSSYFVWR*QTPDCPVSAFR*WKLYMYCFKYGGKSPEILLSFNSSSSKCCWC*NSK*CQCPSRRKC*AGLQCKWHSYSTYSMA*RWKAHS*W*NRKNPSECKWQHIKHLWSSYI*HGEIHMCCY*SRWRRRPNF*LECLCYTYN*G**R*SRETNDFSGYFNKY*MQSHRDASTTDKLAEEWTSSASLLPYPVTGSRTSYQDCESSGV*CRCVYLCGLQQSWGG**ALQSSSVCTTKYGQFNGDRGNHSSQR*FHLYGMHY*WNPSSQYGLA*RWPASGA*CPSDSQHPWNGPAAPQSRD*RFGKVHLHCLK*SWRSQQALYPQGPRTTSH*WI*RT*RDISNC**PT*TYLHCFWNPSP*NDLDERWPAPSTDGSSANSRRRRGSSNFYCSGGGYRKIYMSGIQSCRR***GISSESACTS*YCWN**APGYHCVTEQTSDIGMQVRCSAPTCNYLAQKWRTVTGNTSSANPIWREILANQQC*PR*YSQLYLCCQQHCRKDYKRIYSHCKCSSKHKGGPPEPCNSFK*VNCIGMHR*RCANSKDNMEKGWSCSSWESCKIFHLGKWIPSYSISTCH*HWTVFVYGHQCCWNRSQANRFTGPCSSIYCSGSYQHDCNSKCSNYSGL*GYWDTKTINQLEKKWASS*CGSKSELIQAPFFRFTSNYFPFCG*HCNL*MYCDKRCWR**KNCGSHCPSSTFHS**AYRFPSNQTCPSSNYLHCFGSSISLNSLDQKWYKTASQGRWL*NSVLRSN*NTCHPIKPCWKIHLCR*ECGWLCTSTRDPSCS*ASSHSAPTK*TTRHSEQSYFITM*SNRDTQSFHYLAKRRHQC*HFRQKPCSSS*WRLTDLQSCPRGCWHLHVCGPEPGWYSLGQNQVKCPSSSSH*PSSKGICYCCGQAHHVIL*SRWPPSA*HYMA*RWACNCGIYPPARPQLWLSANSICPAW*CWPLHVHGSQCSRIKQHKHQAHRPCTTQDQKYRRTLHGQ*EFTSHSSMRS*WNPHTSN*LEKRQCSFS*LVRKIHC*TIWRTHFRKCCAGGFWLLYLCC*QCCR*RYTHCQPDCACSPHFY*TSWRRVIK*RRTATIKL*SYWYSIAQINMDLQ*QYYSSPL*QCEWTQ*TCY*KSVKRGFRYLCVHRREQRWLCEGNWICLCERTSSLQR*LSF*LD*TTWWECNPEL*GERRPHPNHPVEQKGSGY*N*PQNPATGQWLPGHLWHC**RCR*LYMCSYQ*SWGGGAQHESDSAKSSYYHS*ASGNCY*CWWQNHIELSGNWRASTNHYMVPSRALYFLG*PG*RVVQQLIIYC*CSERRYL*I*MCCSKLNGFCPCQSASHSPGSWWIFPVVCMESLQCHLWKRHPKEESSVQPAPSSQWWEALPRFRFGNAKLSK*ALSSGW*LVGMESLGRMHKELWTRQPNQDQDLQ*SISSAWWAAM*RECCGNNYVQH*ALPSSWSMERLAALGNMQRKLWERYSDKSKTL**PTTSVWWVLL*WSRNTDASLQ*KKLSNSWQVGDLGQLECLFCVMWRRCQTENKGLLRPCAPVWRKEMRRE*CPE*FLQQ*PLPNPW*LESLEWLGNMQPDV*RRADAAVPHM**PSSLQWGKSLWGTRLPDPEVQH*HVSCGWKLGKLA*LEPVLCLLWRR*KDSEAAVRPSCAS*RWPSLSRRHYSGDQVQCTSMSRWAPASQRKCYWKY**C*IWNCFP*CHNN**P*L*Y*NNTCQNYQCTS*SWFSNEKDSFYSKSHLLDNSKGNRRSSQWLYPHQCSLQKRNSSGICNWRNLADESYCPGLGFRWFFAARYRCEWLCPTASVTC*SHCKGLHRGLHSNRSWAAVRLLNPAVHH*WHQHPIHMEPHRFL*SGTGKNAFLG*NTSCILCGI*L*PDRRDTGF*NSCFNIQRRSQ*SVPLRVYLRLSWTFLC**G*MCSRESLLP*LPQCHGDLLLLLP*RPHHSCRWKNLSRY**VCFG*AYLPRWSGL*QYDWILSLCGPLWKWLSKNL*WAELSRY**MSRIQPLSPALFQCHRKFPLWM*TWVSAQRQKMHGCERV*TKCMQTRSAL*EHPWWL*VH*SLSKWNDQGRKWNLY*Y**M*RWDPSVQI*PDM*EYKRQLSLCMPKRLSVSRSWKTLHGH**M*TSA*TLCTSVLQHPRQLQVYLSTRTTFIRGREILRWIGEAAKLWHSIQ*L*PCTVLPCEKQLSTSTALQTVLTSLQLLLRV*KQQNISLQD*KDY*ENLP*RL*GKP*HMCRY**M*KYRCLPA*V*EYLWKLSVHLPTWLSTHTQWKDMPRYR*MSGAECALWTQSHVLQHERKLPVHRYTLSTQLPTGSCFRVLPQELSTQ*FGMCLEPICLGIQTRLPPIWNSHQSRFNPAGCIHTGWSDASQDNFPHGR*GTDCSFCLEG*KPERSGVYNTTTTRSRDLPHEGPSLILQCQWDH*ISDHIHSLYSCVRLSIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28813 ACOT7::HMCN1 ENSG00000097021.21::ENSG00000143341.12 H4 SRR8615388 SRR8639179 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 336 TRUE 655 TRUE 237 ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6358826:- chr1:6324329-6453827:- chr1:6418886:- HMCN1 ENSG00000143341.12 protein_coding + + chr1:185734391-186190949:+ chr1:185962518:+ chr1:185703523-186160081:+ chr1:185931650:+ chr1:6353087,chr1:6353090 chr1:185934201,chr1:185934198 NA NA chr1:6413147,chr1:6413150 chr1:185903333,chr1:185903330 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame 4HBT_2-PARTIAL|11-20~|0.0006^4HBT-PARTIAL|18-20~|2.1e-18 Ig_3-PARTIAL|~1829-1902|5.2e-17^Ig_2|1836-1915|6.7e-12^I-set|1838-1915|7.3e-18^C1-set|1841-1889|0.049^C2-set_2|1842-1877|0.00029^ig|1844-1908|7.6e-09^Ig_C17orf99|1844-1914|0.9^BiPBP_C|1846-1907|0.36^V-set_CD47|1847-1916|0.0022^Ig_6|1853-1900|0.24^Receptor_2B4|1858-1909|0.33^Pox_vIL-18BP|1861-1913|0.039^C2-set|1870-1915|0.25^V-set|1877-1916|0.0021^Izumo-Ig|1883-1915|1.8^DRL_cat|1898-2009|9.2e-05^Ig_3|1929-1995|2.2e-15^ig|1930-2005|1.2e-05^I-set|1931-2008|2.3e-16^Ig_2|1932-1998|9.5e-12^Ig_C17orf99|1936-2001|3.6^BiPBP_C|1936-1963|0.41^C2-set_2|1938-1968|0.00066^Receptor_2B4|1951-1998|0.46^Ig_6|1971-1994|2.6^V-set|1976-2010|0.0098^Izumo-Ig|1980-2008|0.52^C2-set_2|2011-2054|0.00045^Ig_3|2012-2087|9.1e-18^Ig_2|2012-2095|1e-10^I-set|2013-2100|3.1e-17^V-set|2021-2050|5.7^V-set_CD47|2024-2100|0.052^ig|2025-2094|2.3e-05^BiPBP_C|2027-2059|0.076^C1-set|2028-2060|4.9^Receptor_2B4|2043-2092|1.4^Ig_6|2047-2085|3^C2-set|2064-2102|2.9^V-set|2068-2100|0.0087^Ig_C17orf99|2077-2101|3^Ig_3|2103-2178|3.7e-18^Ig_2|2104-2189|1.5e-10^I-set|2105-2191|1.3e-17^ig|2110-2186|8.6e-07^Ig_C17orf99|2118-2184|0.57^C2-set_2|2120-2150|0.012^V-set_CD47|2125-2188|0.0017^BiPBP_C|2125-2161|9.4^C1-set|2135-2177|5.9^C2-set|2145-2189|0.063^V-set|2151-2190|4.8e-05^Ig_6|2151-2176|1.3^Herpes_gI|2151-2173|6.1^Pox_vIL-18BP|2152-2187|0.18^Receptor_2B4|2157-2189|0.00084^Izumo-Ig|2158-2179|8.8^Ig_3|2194-2273|9.8e-14^I-set|2202-2286|2.1e-15^ig|2204-2282|1.8e-07^Ig_2|2206-2278|1.3e-07^C2-set_2|2220-2237|0.75^C2-set|2246-2287|5^V-set|2253-2286|0.075^Ig_C17orf99|2254-2287|0.054^Ig_3|2290-2367|2e-18^I-set|2298-2380|3.6e-19^Ig_2|2299-2374|4e-11^ig|2300-2374|6.7e-06^C2-set_2|2307-2334|0.012^C1-set|2307-2335|0.033^V-set_CD47|2308-2377|0.67^BiPBP_C|2312-2334|2.1^Ig_6|2333-2364|0.016^Pox_vIL-18BP|2341-2374|7.2^Herpes_gI|2346-2371|8.6^V-set|2347-2381|0.007^Ig_3|2383-2461|1.4e-18^I-set|2391-2474|1.7e-18^V-set|2392-2423|0.013^ig|2393-2465|2.8e-10^Ig_2|2395-2466|3.3e-12^C2-set_2|2397-2432|0.0077^C1-set|2400-2462|0.066^Ig_6|2403-2462|0.03^BiPBP_C|2403-2427|6.6^V-set_CD47|2419-2469|0.96^C2-set|2434-2461|0.5^Herpes_gI|2440-2474|0.039^Izumo-Ig|2441-2462|0.32^V-set|2442-2468|0.0016^Ig_3|2477-2553|1.2e-19^C2-set_2|2478-2524|4.2e-06^I-set|2484-2567|1.5e-21^Ig_2|2485-2567|1.4e-14^ig|2488-2565|4.2e-13^V-set|2488-2567|0.00021^C1-set|2493-2544|0.0034^Ig_C17orf99|2493-2568|0.3^V-set_CD47|2495-2554|0.63^Ig_6|2495-2555|0.0098^BiPBP_C|2495-2526|0.026^C2-set|2495-2568|0.11^I-set|2581-2663|8.4e-18^Ig_3|2581-2650|3.5e-17^ig|2583-2653|1.3e-08^Ig_2|2590-2656|5e-14^C1-set|2590-2618|0.051^BiPBP_C|2595-2634|0.059^C2-set_2|2598-2631|0.0012^Ig_6|2606-2648|0.58^Herpes_gE_N|2629-2649|3.4^V-set|2630-2663|0.035^V-set_CD47|2630-2663|0.054^Izumo-Ig|2637-2663|5.5^Ig_3|2680-2749|1e-17^ig|2680-2756|4.7e-10^I-set|2681-2762|2.1e-22^C1-set|2681-2720|0.49^C2-set_2|2685-2717|0.0047^Ig_2|2686-2760|1.1e-10^V-set_CD47|2688-2750|0.013^BiPBP_C|2697-2718|1.1^Ig_6|2706-2748|0.0017^Receptor_2B4|2706-2752|0.0098^Izumo-Ig|2716-2749|4.5^V-set|2718-2749|0.0022^Herpes_gI|2718-2744|2.2^C2-set|2728-2765|1.3^I-set|2789-2865|7.6e-17^Ig_3|2789-2852|3.2e-15^Ig_2|2789-2861|3.3e-12^ig|2789-2858|6.7e-08^C2-set_2|2801-2820|0.0023^BiPBP_C|2804-2828|0.29^C1-set|2805-2820|9.4^V-set_CD47|2808-2854|2.7^Receptor_2B4|2809-2855|1.9^Herpes_gI|2821-2850|4.3^Ig_6|2828-2850|4.1^Izumo-Ig|2830-2866|0.098^C2-set|2831-2866|7.4^Herpes_gE_N|2832-2867|4.3^V-set|2833-2867|0.016^I-set|2879-2960|5.3e-17^Ig_3|2879-2947|7.9e-14^ig|2880-2957|1.6e-08^C2-set_2|2881-2915|0.0027^Ig_2|2884-2959|9.6e-08^V-set_CD47|2906-2960|8.5^Receptor_2B4|2906-2952|3.2^Ig_6|2908-2946|0.035^C2-set|2914-2949|0.56^V-set|2928-2961|0.094^Ig_C17orf99|2933-2954|0.85^A2M|2942-2985|0.2^Ig_3|2963-3039|4.8e-17^I-set|2970-3052|1e-18^ig|2971-3049|8.1e-09^V-set|2971-3004|0.28^Ig_2|2975-3052|4.4e-12^C2-set_2|2976-3020|0.00034^V-set_CD47|2977-3052|0.0076^C1-set|2979-3011|0.0019^V-set|3019-3052|0.063^Receptor_2B4|3020-3049|8.7^A2M|3034-3069|1.5^Ig_3|3055-3134|1.4e-17^I-set|3065-3147|1.5e-20^V-set|3068-3147|0.00043^Ig_C17orf99|3068-3148|0.04^Ig_2|3069-3146|3.8e-13^ig|3069-3135|8e-10^Izumo-Ig|3070-3132|2.6^C2-set_2|3074-3105|0.00081^V-set_CD47|3076-3137|0.13^C1-set|3076-3130|0.51^Ig_6|3079-3132|0.00032^BiPBP_C|3089-3104|3.4^Receptor_2B4|3090-3147|0.062^Herpes_gI|3110-3143|0.056^C2-set|3111-3148|4.8^Ig_3|3150-3228|1.7e-19^BiPBP_C|3150-3194|7.4^C2-set_2|3153-3230|0.00023^Ig_2|3162-3235|1.1e-10^C1-set|3165-3224|0.0057^I-set|3166-3240|6e-18^ig|3166-3236|3.2e-11^V-set_CD47|3166-3232|0.0011^Ig_C17orf99|3166-3235|0.08^Ig_6|3199-3226|1.5^C2-set|3199-3229|1.6^V-set|3207-3236|0.1^Receptor_2B4|3207-3238|0.75^Herpes_gE_N|3207-3236|2.7^A2M|3222-3251|1.6^Herpes_gE_N|3243-3322|0.55^I-set|3252-3336|5.2e-22^Ig_3|3253-3323|8.9e-20^ig|3253-3330|4e-10^V-set|3253-3337|0.0002^C1-set|3260-3321|0.005^Ig_2|3261-3328|2.3e-09^C2-set_2|3261-3304|0.00028^Ig_C17orf99|3261-3337|0.3^BiPBP_C|3262-3293|0.21^V-set_CD47|3269-3336|0.14^Ig_6|3279-3321|1.7^C2-set|3295-3337|3.4^I-set|3353-3430|2.8e-17^Ig_3|3354-3417|2.8e-13^ig|3355-3425|1.8e-08^C2-set_2|3357-3383|0.0021^Ig_2|3358-3421|3.1e-08^V-set|3398-3430|0.015^Ig_C17orf99|3401-3432|0.12^I-set|3443-3523|9.5e-19^ig|3443-3519|1.2e-10^Ig_3|3444-3510|7.1e-14^Ig_2|3445-3523|1e-10^C2-set_2|3455-3483|0.0026^BiPBP_C|3463-3478|9.4^Herpes_gI|3482-3523|3^Ig_6|3483-3509|0.68^Receptor_2B4|3487-3521|0.75^Izumo-Ig|3487-3509|4.5^V-set|3489-3523|0.059^V-set_CD47|3490-3523|0.12^C2-set|3490-3513|0.22^A2M|3504-3546|0.27^Ig_3|3526-3602|2.7e-17^BiPBP_C|3526-3577|0.017^C2-set_2|3528-3592|4e-05^ig|3534-3608|1.4e-10^I-set|3536-3615|1.2e-15^V-set|3536-3567|2.3^Ig_2|3540-3612|2.3e-10^C1-set|3543-3574|0.31^Herpes_gI|3576-3598|2.5^Ig_6|3580-3600|0.77^V-set|3584-3616|0.0042^C2-set|3584-3607|1.4^Ig_3|3620-3696|4e-16^I-set|3626-3709|6.3e-18^ig|3628-3707|1.2e-10^Ig_2|3631-3709|1e-09^C2-set_2|3634-3663|0.00044^C1-set|3634-3664|0.55^Ig_C17orf99|3635-3706|0.07^V-set_CD47|3636-3698|0.23^BiPBP_C|3638-3666|0.91^V-set|3676-3709|0.037^A2M|3690-3718|2.2^Ig_3|3712-3787|1.2e-16^I-set|3713-3800|3.2e-17^ig|3719-3794|1.9e-07^C2-set_2|3727-3759|0.00068^Ig_2|3728-3799|2.3e-08^V-set_CD47|3731-3801|3.5^BiPBP_C|3731-3758|2^Herpes_gI|3748-3783|3.9^V-set|3757-3801|0.0001^Receptor_2B4|3757-3791|0.036^Ig_6|3761-3786|0.058^Ig_C17orf99|3776-3799|3.3^Ig_3|3803-3880|1.1e-15^Ig_2|3804-3893|1.2e-11^I-set|3805-3893|3.6e-16^C2-set_2|3806-3867|0.0026^ig|3810-3885|8.8e-08^V-set_CD47|3814-3893|0.1^C1-set|3818-3880|0.048^BiPBP_C|3820-3855|9^Ig_6|3838-3879|8.2^C2-set|3845-3893|0.15^V-set|3857-3893|8.4e-05^Ig_3|3896-3971|2.1e-15^I-set|3897-3984|3.7e-14^Ig_2|3897-3976|3.7e-10^ig|3907-3979|8.7e-09^C2-set_2|3912-3936|0.086^V-set|3946-3985|0.009^Ig_6|3947-3972|0.36^V-set_CD47|3955-3984|1.7^Ig_C17orf99|3964-3983|5.7^Ig_3|3987-4062|4.3e-18^I-set|3988-4075|1.3e-15^Ig_2|3988-4070|2.7e-10^C2-set_2|3989-4033|0.12^ig|3994-4065|1.9e-10^V-set_CD47|4002-4075|3.9^Ig_C17orf99|4009-4067|1.5^V-set|4030-4075|0.0012^Ig_6|4033-4076|0.14^Izumo-Ig|4049-4079|0.23^Ig_3|4078-4152|1.1e-18^I-set|4079-4165|4.6e-19^Ig_2|4079-4165|1.3e-12^ig|4086-4163|6.2e-14^C1-set|4093-4122|0.92^V-set_CD47|4094-4166|0.068^BiPBP_C|4095-4125|2.5^C2-set_2|4096-4122|0.00047^Ig_C17orf99|4096-4165|0.044^Ig_6|4118-4170|0.21^V-set|4126-4166|3.4e-05^Izumo-Ig|4132-4169|0.073^Ig_3|4168-4243|5.6e-16^Ig_2|4169-4256|4.4e-12^I-set|4170-4256|2.6e-16^ig|4177-4253|1.1e-09^C2-set_2|4179-4209|0.043^V-set_CD47|4184-4258|0.077^V-set|4221-4257|3.5e-05^Ig_6|4224-4243|6.5^Izumo-Ig|4224-4260|0.095^C2-set|4226-4247|2.3^Ig_C17orf99|4236-4255|3.5^I-set|4260-4339|4.2e-18^Ig_3|4260-4332|1e-17^V-set|4266-4297|1.8^ig|4268-4336|2.3e-13^Ig_2|4271-4334|7.7e-11^C2-set_2|4273-4310|1.5^Ig_C17orf99|4273-4335|0.15^V-set_CD47|4291-4333|0.014^Ig_6|4307-4333|0.042^V-set|4308-4330|0.0038^C2-set|4310-4333|0.085^Izumo-Ig|4310-4331|0.21^Receptor_2B4|4311-4342|2.2^Herpes_gE_N|4311-4335|1.9^Ig_3|4348-4423|5.6e-16^ig|4363-4434|8.6e-12^I-set|4364-4435|1.5e-17^Ig_2|4364-4436|1.6e-09^C2-set_2|4366-4390|0.16^V-set_CD47|4371-4436|0.0014^V-set|4397-4435|0.0025^Receptor_2B4|4400-4429|3.7^Ig_C17orf99|4403-4436|0.79^Ig_3|4439-4513|1.9e-18^Ig_2|4440-4513|6.1e-11^I-set|4442-4525|2e-17^ig|4445-4522|2.4e-12^C2-set_2|4445-4480|0.00036^V-set|4448-4479|0.041^C1-set|4453-4482|5^TSP_1|4533-4583|7.4e-17^TSP1_spondin|4533-4583|9.8e-13^TSP1_ADAMTS|4537-4583|2e-06^TSP_1|4590-4640|1.6e-15^TSP1_spondin|4590-4640|5.4e-09^TSP1_ADAMTS|4594-4640|0.00015^TSP_1|4647-4697|8.5e-14^TSP1_spondin|4647-4697|9.6e-10^TSP1_ADAMTS|4650-4697|3.9e-07^TSP1_spondin|4705-4754|2.1e-09^TSP_1|4706-4754|1.1e-13^TSP1_ADAMTS|4708-4754|8.2e-05^TSP_1|4761-4811|5.7e-12^TSP1_spondin|4761-4811|1.3e-09^TSP1_ADAMTS|4765-4811|0.015^TSP1_spondin|4818-4868|2.7e-10^TSP_1|4819-4868|1.6e-13^TSP1_ADAMTS|4822-4868|6.3e-05^G2F|4870-5051|3.2e-55^cEGF|5091-5110|0.026^FXa_inhibition|5091-5102|4.9^EGF_CA|5107-5145|2.2e-07^EGF|5111-5136|5.6e-05^FXa_inhibition|5116-5145|1e-08^EGF_3|5120-5145|1.5^hEGF|5120-5135|0.64^cEGF|5128-5150|2e-11^EGF_CA|5147-5190|5.1e-13^FXa_inhibition|5151-5190|0.17^EGF_3|5151-5190|0.00015^hEGF|5163-5174|1.1^cEGF|5170-5195|1.2e-07^EGF_CA|5192-5228|3.2e-09^EGF|5196-5223|0.0042^FXa_inhibition|5201-5224|0.01^EGF_3|5203-5228|0.00018^hEGF|5205-5221|0.08^cEGF|5212-5233|2.8e-08^EGF_CA|5230-5270|1.3e-08^FXa_inhibition|5234-5270|0.03^EGF|5234-5255|5.5^EGF_3|5237-5255|0.037^hEGF|5245-5255|0.89^cEGF|5251-5275|2.4e-05^EGF_CA|5272-5313|5.2e-15^FXa_inhibition|5276-5313|3.5e-05^EGF_3|5276-5309|2e-08^EGF|5276-5304|0.00036^hEGF|5286-5304|0.00069^cEGF|5295-5318|1.1e-08^EGF_CA|5315-5354|3.6e-10^FXa_inhibition|5319-5354|4.6e-10^EGF|5319-5344|0.0001^EGF_3|5329-5354|2.8e-05^hEGF|5329-5344|1.8e-05^cEGF|5336-5354|4e-05^cEGF|5418-5435|0.013^EGF_CA|5432-5470|2.5e-10^EGF|5436-5462|6.9e-06^FXa_inhibition|5438-5470|6.8e-08^EGF_3|5444-5470|0.00091^hEGF|5445-5461|5.8e-05^cEGF|5452-5475|1.3e-14^EGF_CA|5472-5516|7.2e-10^FXa_inhibition|5476-5508|7.2^EGF_3|5476-5508|0.00062^Ig_3|5486-5499|8.7^hEGF|5487-5499|2.8 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:179.34Mb] 10 12 10 8.48 ONLY_REF_SPLICE YES_LDAS 0.1619 GT 1.9899 AG 1.5628 ENST00000377842.7 1-20 ENST00000271588.9 1829-16908 chr1|-|[1]6358826-6358845[0]<==>chr1|+|[1]185962518-185962659[1]|[2]185963768-185963895[0]|[1]185965802-185965915[0]|[1]185970335-185970493[0]|[1]185977787-185977981[0]|[1]185980978-185981073[0]|[1]185982262-185982389[2]|[0]185984169-185984313[0]|[1]185987432-185987544[2]|[0]185989488-185989647[0]|[1]185990275-185990443[1]|[2]185993182-185993309[0]|[1]185994815-185995087[0]|[1]185997429-185997524[0]|[1]186000045-186000239[0]|[1]186001298-186001428[2]|[0]186001594-186001741[0]|[1]186003718-186003844[1]|[2]186007128-186007282[0]|[1]186015159-186015437[0]|[1]186015958-186016239[0]|[1]186016963-186017071[1]|[2]186018183-186018352[0]|[1]186019541-186019695[2]|[0]186023030-186023153[0]|[1]186037934-186038035[0]|[1]186038829-186039005[0]|[1]186039728-186039879[2]|[0]186041013-186041136[0]|[1]186045688-186045863[2]|[0]186048743-186048839[0]|[1]186052952-186053074[0]|[1]186053825-186053986[0]|[1]186055393-186055674[0]|[1]186057234-186057401[0]|[1]186061851-186061964[0]|[1]186062514-186062600[0]|[1]186065238-186065429[0]|[1]186067834-186068007[0]|[1]186069663-186069776[0]|[1]186070612-186070757[2]|[0]186074741-186074891[0]|[1]186076428-186076622[0]|[1]186078107-186078220[0]|[1]186081207-186081394[2]|[0]186082865-186082961[0]|[1]186086246-186086407[0]|[1]186087217-186087330[0]|[1]186087443-186087645[2]|[0]186087932-186088013[0]|[1]186088145-186088276[0]|[1]186088606-186088755[0]|[1]186090758-186090917[1]|[2]186093134-186093258[0]|[1]186093486-186093669[1]|[2]186094276-186094373[0]|[1]186095243-186095521[0]|[1]186103472-186103668[2]|[0]186106884-186106965[0]|[1]186108461-186108597[2]|[0]186112812-186112953[0]|[1]186113979-186114123[1]|[2]186114819-186114946[0]|[1]186115258-186115414[1]|[2]186116994-186117115[0]|[1]186117459-186117623[0]|[1]186119191-186119298[0]|[1]186119745-186119882[0]|[1]186120011-186120145[0]|[1]186122951-186123220[0]|[1]186125604-186125794[2]|[0]186128078-186128291[0]|[1]186129966-186130100[0]|[1]186130507-186130697[2]|[0]186132328-186132409[0]|[1]186136668-186136937[0]|[1]186137498-186137668[0]|[1]186137802-186137972[0]|[1]186144173-186144343[0]|[1]186144533-186144703[0]|[1]186145403-186145573[0]|[1]186145753-186145923[0]|[1]186151200-186151349[0]|[1]186151606-186151743[0]|[1]186152750-186152871[2]|[0]186153750-186153987[0]|[1]186165111-186165173[0]|[1]186166184-186166303[0]|[1]186166808-186166942[0]|[1]186171337-186171450[0]|[1]186172006-186172131[0]|[1]186174514-186174642[0]|[1]186178416-186178766[0]|[1]186182168-186182287[0]|[1]186187883-186188009[1]|[2]186189512-186189878[2] atggctttccagctgagcagAACCACCCAAAGTCACTGTGATGCCCAAGAATCAGTCTTTCACAGGAGGGTCTGAGGTCTCCATCATGTGTTCTGCAACAGGTTATCCCAAACCAAAGATTGCCTGGACCGTTAACGATATGTTTATCGTGGGTTCACACAGGTATAGGATGACCTCAGATGGTACCTTATTTATCAAAAATGCAGCTCCCAAAGATGCAGGGATCTATGGTTGCCTAGCAAGTAATTCAGCTGGAACAGATAAACAGAATTCTACTCTCAGATACATTGAAGCCCCTAAGTTGATGGTAGTTCAGAGTGAGCTCTTGGTTGCCCTTGGGGATATAACCGTTATGGAATGCAAAACCTCTGGTATTCCTCCACCTCAAGTTAAATGGTTCAAAGGAGATCTTGAGTTGAGGCCCTCAACATTCCTCATTATTGACCCTCTCTTGGGACTTTTGAAGATTCAAGAAACACAAGATCTGGATGCTGGCGATTATACCTGTGTAGCCATCAATGAGGCTGGAAGAGCAACTGGCAAGATAACTCTGGATGTTGGCTCACCTCCAGTTTTCATACAAGAACCTGCTGATGTGTCTATGGAAATTGGCTCAAATGTGACATTACCTTGTTATGTTCAGGGTTATCCAGAACCAACAATCAAATGGCGAAGATTAGACAACATGCCAATTTTCTCAAGACCTTTTTCAGTTAGTTCCATCAGCCAACTAAGAACAGGAGCTCTCTTTATTTTAAACTTATGGGCAAGTGATAAAGGAACCTATATTTGTGAAGCTGAAAACCAGTTTGGAAAGATCCAGTCAGAGACAACAGTAACAGTGACCGGACTTGTTGCTCCACTTATTGGAATCAGCCCTTCAGTGGCCAATGTTATTGAAGGACAGCAGCTTACTTTGCCCTGTACTCTGTTAGCTGGAAATCCCATTCCAGAACGTCGGTGGATTAAGAATTCAGCTATGTTGCTCCAAAATCCTTACATCACTGTGCGCAGTGATGGGAGCCTCCATATTGAAAGAGTTCAGCTTCAGGATGGTGGTGAATATACTTGTGTGGCCAGTAACGTTGCTGGGACCAATAACAAAACTACCTCTGTGGTTGTGCATGTTCTGCCAACCATTCAGCATGGGCAGCAGATACTCAGTACAATTGAAGGCATTCCAGTAACTTTACCATGCAAAGCAAGTGGAAATCCCAAACCGTCTGTCATCTGGTCCAAGAAAGGAGAGCTGATTTCAACCAGCAGTGCTAAGTTTTCAGCAGGAGCTGATGGTAGTCTGTATGTGGTATCACCTGGAGGAGAGGAGAGTGGGGAGTATGTCTGCACTGCCACCAATACAGCCGGCTACGCCAAAAGGAAAGTGCAGCTAACAGTCTATGTAAGGCCCAGAGTGTTTGGAGATCAACGAGGACTGTCCCAGGATAAGCCTGTTGAGATCTCCGTCCTTGCAGGGGAAGAGGTAACACTTCCATGTGAAGTGAAGAGCTTACCTCCACCCATAATTACTTGGGCCAAAGAAACCCAGCTCATCTCACCGTTCTCTCCAAGACACACATTCCTCCCTTCTGGTTCAATGAAGATCACTGAAACCCGCACTTCAGATAGTGGGATGTATCTTTGTGTTGCCACAAATATTGCTGGGAATGTGACTCAGGCTGTCAAATTAAATGTCCATGTTCCTCCAAAGATACAGCGTGGACCTAAACATCTCAAAGTCCAAGTTGGTCAAAGAGTGGATATTCCATGTAATGCTCAAGGGACTCCTCTTCCTGTAATCACCTGGTCCAAAGGTGGAAGCACTATGCTGGTTGATGGAGAGCACCATGTTAGCAATCCAGACGGAACTTTAAGCATCGACCAAGCCACGCCCTCAGATGCTGGCATATATACATGTGTTGCTACTAACATAGCAGGCACTGATGAAACAGAGATAACGCTACATGTCCAAGAACCACCCACAGTGGAAGATCTAGAACCTCCATATAACACTACTTTCCAAGAAAGAGTGGCCAATCAACGCATTGAATTTCCATGTCCTGCAAAAGGTACCCCTAAACCAACCATCAAATGGTTACACAATGGTAGAGAGTTGACAGGCAGAGAGCCTGGCATTTCTATCTTGGAAGATGGCACATTGCTGGTTATTGCTTCTGTTACACCCTATGACAATGGGGAGTACATCTGTGTGGCAGTCAATGAAGCTGGAACCACAGAAAGAAAATATAACCTCAAAGTCCATGTTCCTCCAGTAATTAAAGATAAAGAACAAGTTACAAATGTGTCGGTGTTGTTAAATCAGCTGACCAATCTCTTCTGTGAAGTGGAAGGCACTCCATCTCCCATCATTATGTGGTATAAAGATAATGTCCAGGTGACTGAAAGCAGCACTATTCAGACTGTGAACAATGGGAAGATACTGAAGCTCTTCAGAGCCACTCCAGAGGATGCAGGAAGATATTCCTGCAAAGCAATTAATATTGCAGGCACTTCTCAGAAGTACTTTAACATTGATGTGCTAGTTCCACCCACCATAATAGGTACCAACTTCCCAAATGAAGTCTCAGTTGTCCTCAACCGTGACGTCGCCCTTGAATGCCAGGTCAAAGGCACTCCCTTTCCTGATATTCATTGGTTCAAAGATGGCAAGCCTTTATTTTTGGGCGATCCTAATGTTGAACTTCTAGACAGAGGACAAGTCTTACATTTAAAGAATGCACGGAGAAATGACAAGGGGCGCTACCAATGTACTGTGTCTAATGCAGCTGGCAAACAAGCCAAGGATATAAAACTGACTATCTATATTCCACCTAGTATTAAAGGAGGAAATGTCACCACAGACATATCAGTATTGATCAACAGCCTTATTAAACTGGAATGTGAAACACGGGGACTTCCAATGCCTGCCATTACTTGGTATAAGGACGGGCAGCCAATCATGTCCAGCTCACAAGCACTTTATATTGATAAAGGACAATATCTTCATATTCCTCGAGCACAGGTCTCTGATTCAGCAACATATACGTGTCATGTAGCCAATGTTGCTGGAACTGCTGAAAAATCATTCCATGTGGATGTCTATGTTCCTCCAATGATTGAAGGCAACTTGGCCACGCCTTTGAATAAGCAAGTAGTTATTGCTCATTCTCTGACACTGGAGTGCAAAGCTGCTGGAAACCCTTCTCCCATTCTCACCTGGTTGAAAGATGGTGTACCTGTGAAAGCTAATGACAATATCCGCATAGAAGCTGGTGGGAAGAAACTCGAAATCATGAGTGCCCAAGAAATTGATCGAGGACAGTACATATGCGTGGCTACCAGTGTGGCAGGAGAAAAGGAAATCAAATATGAAGTTGATGTCTTGGTGCCACCAGCTATAGAAGGAGGAGATGAAACATCTTACTTCATTGTGATGGTTAATAACTTACTGGAGCTAGATTGTCATGTGACAGGCTCTCCCCCACCAACTATCATGTGGCTGAAGGATGGCCAGTTAATTGATGAAAGGGATGGATTCAAGATTTTATTAAATGGACGCAAACTGGTTATTGCTCAGGCTCAAGTGTCAAACACAGGCCTTTATCGGTGCATGGCAGCAAATACTGCTGGAGACCACAAGAAGGAATTTGAAGTGACTGTTCATGTTCCTCCAACAATCAAGTCCTCAGGCCTTTCTGAGAGAGTTGTGGTAAAATACAAGCCTGTCGCCTTGCAGTGCATAGCCAATGGGATTCCAAATCCTTCCATTACATGGTTAAAAGATGACCAGCCTGTGAACACTGCCCAAGGAAACCTTAAAATACAGTCTTCTGGTCGAGTTCTACAAATTGCCAAAACCCTGTTGGAAGATGCTGGCAGATACACATGTGTGGCTACCAACGCAGCTGGAGAAACACAACAGCACATTCAACTGCATGTTCATGAACCACCTAGTCTGGAAGATGCTGGAAAAATGCTGAATGAGACTGTGTTGGTGAGCAACCCTGTACAGCTGGAGTGTAAGGCAGCTGGAAATCCTGTGCCTGTTATTACATGGTACAAAGATAATCGTCTACTCTCAGGTTCCACCAGCATGACTTTCTTGAACAGAGGACAGATCATTGATATTGAAAGTGCCCAGATCTCAGATGCTGGCATATATAAATGCGTGGCCATCAACTCAGCTGGAGCTACAGAGTTATTTTACAGTCTGCAAGTTCATGTGGCCCCATCAATTTCTGGCAGCAATAACATGGTGGCAGTGGTGGTTAATAACCCGGTGAGGTTAGAATGTGAAGCCAGAGGTATTCCTGCCCCAAGTCTGACCTGGTTGAAAGATGGGAGTCCTGTTTCTAGTTTTTCTAATGGATTACAGGTTCTCTCTGGTGGTCGAATCCTAGCATTGACCAGTGCACAAATCAGCGACACAGGAAGGTACACCTGCGTGGCAGTGAATGCTGCTGGAGAAAAGCAAAGGGACATTGACCTCCGAGTATATGTTCCGCCAAATATTATGGGAGAAGAACAGAATGTCTCTGTCCTCATTAGCCAAGCTGTGGAATTACTATGTCAAAGTGATGCTATTCCCCCACCTACTCTTACTTGGTTAAAAGACGGCCACCCCTTGCTGAAGAAACCAGGCCTCAGTATATCTGAAAATAGAAGTGTGTTAAAGATTGAAGATGCTCAGGTTCAAGACACTGGTCGTTACACTTGTGAAGCAACAAATGTTGCTGGAAAAACTGAAAAAAACTACAATGTCAACATTTGGGTCCCCCCAAATATTGGTGGTTCTGATGAACTTACTCAACTTACAGTCATTGAAGGGAATCTCATTAGTCTGTTGTGTGAATCAAGTGGTATTCCACCCCCAAATCTCATCTGGAAGAAGAAAGGCTCTCCAGTGCTGACTGATTCCATGGGGCGAGTTAGAATTTTATCTGGGGGCAGGCAATTACAAATTTCAATTGCTGAAAAGTCTGATGCAGCACTCTATTCATGTGTGGCGTCGAATGTTGCTGGGACTGCAAAGAAAGAATACAATCTGCAAGTTTACATTAGACCAACCATAACCAACAGTGGCAGCCACCCTACTGAAATTATTGTGACCCGAGGGAAGAGTATCTCCTTGGAGTGTGAGGTGCAGGGTATTCCACCACCAACAGTGACCTGGATGAAAGATGGCCACCCCTTGATCAAGGCAAAGGGAGTAGAAATACTGGATGAAGGTCACATCCTTCAGCTGAAGAACATTCATGTATCTGACACAGGCCGTTATGTGTGTGTTGCTGTGAATGTAGCAGGAATGACTGACAAAAAATATGACTTAAGTGTCCATGCTCCTCCAAGCATCATAGGAAACCACAGGTCACCTGAAAATATTAGTGTGGTAGAAAAGAACTCAGTATCTTTGACTTGTGAAGCTTCTGGAATTCCCCTGCCTTCCATAACCTGGTTCAAAGATGGGTGGCCTGTCAGCCTTAGCAATTCTGTGAGGATTCTTTCAGGAGGCAGGATGCTACGGCTGATGCAGACCACAATGGAAGATGCTGGCCAATATACTTGCGTTGTAAGGAATGCAGCTGGTGAAGAAAGAAAAATCTTTGGGCTTTCAGTATTAGTACCACCTCATATTGTGGGTGAAAATACATTGGAAGATGTGAAGGTAAAAGAGAAACAGAGTGTTACGCTGACTTGTGAAGTGACAGGGAATCCAGTGCCAGAAATTACATGGCACAAAGATGGGCAGCCCCTCCAAGAAGATGAAGCCCATCACATTATATCTGGTGGCCGTTTTCTTCAAATTACCAATGTCCAGGTGCCACACACTGGAAGATATACATGTTTGGCTTCCAGTCCAGCTGGCCACAAGAGCAGGAGCTTCAGTCTTAATGTATTTGTATCTCCTACAATTGCTGGTGTAGGTAGTGATGGCAACCCTGAAGATGTCACTGTCATCCTTAACAGCCCTACATCTTTGGTCTGTGAAGCTTATTCATATCCTCCAGCTACCATCACCTGGTTTAAGGATGGCACTCCTTTAGAATCTAACCGAAATATTCGTATTCTTCCAGGAGGCAGAACTCTGCAGATCCTCAATGCACAGGAGGACAATGCTGGAAGATACTCTTGTGTAGCCACGAATGAGGCTGGAGAAATGATAAAGCACTATGAAGTGAAGGTGTACATTCCACCCATAATCAATAAAGGGGACCTTTGGGGGCCAGGTCTTTCCCCTAAAGAAGTGAAGATCAAAGTAAACAACACTCTGACCTTGGAATGTGAAGCGTATGCAATTCCTTCTGCCTCCCTCAGCTGGTACAAGGATGGACAGCCCCTTAAATCCGATGATCATGTTAATATTGCTGCGAATGGACACACACTTCAAATAAAGGAGGCTCAAATATCAGACACCGGACGATATACTTGTGTAGCATCTAACATTGCAGGTGAAGATGAGTTGGATTTTGATGTGAATATTCAAGTTCCTCCAAGTTTTCAGAAACTCTGGGAAATAGGAAACATGCTAGATACTGGCAGGAATGGTGAAGCCAAAGATGTGATCATCAACAATCCCATTTCTCTTTACTGTGAGACAAATGCTGCTCCCCCTCCTACACTGACATGGTACAAAGATGGCCACCCTCTGACCTCAAGTGATAAAGTATTGATTTTGCCAGGAGGGCGAGTGTTGCAGATTCCTCGGGCTAAAGTAGAAGATGCTGGGAGATACACATGTGTGGCTGTGAATGAGGCTGGAGAAGATTCCCTTCAATATGATGTCCGTGTACTCGTGCCGCCAATTATCAAGGGAGCAAATAGTGATCTCCCTGAAGAGGTCACCGTGCTGGTGAACAAGAGTGCACTGATAGAGTGTTTATCCAGTGGCAGCCCAGCACCAAGGAATTCCTGGCAGAAAGATGGACAGCCCTTGCTAGAAGATGACCATCATAAATTTCTATCTAATGGACGAATTCTGCAGATTCTGAATACTCAAATAACAGATATCGGCAGGTATGTGTGTGTTGCTGAGAACACAGCTGGGAGTGCCAAAAAATATTTTAACCTCAATGTTCATGTTCCTCCAAGTGTCATTGGTCCTAAATCTGAAAATCTTACCGTCGTGGTGAACAATTTCATCTCTTTGACCTGTGAGGTCTCTGGTTTTCCACCTCCTGACCTCAGCTGGCTCAAGAATGAACAGCCCATCAAACTGAACACAAATACTCTCATTGTGCCTGGTGGTCGAACTCTACAGATTATTCGGGCCAAGGTATCAGATGGTGGTGAATACACTTGTATAGCTATCAATCAAGCTGGCGAAAGCAAGAAAAAGTTTTCCCTGACTGTTTATGTGCCCCCAAGCATTAAAGACCATGACAGTGAATCTCTTTCTGTAGTTAATGTAAGAGAGGGAACTTCTGTGTCTTTGGAGTGTGAGTCGAACGCTGTGCCACCTCCAGTCATCACTTGGTATAAGAATGGGCGGATGATAACAGAGTCTACTCATGTGGAGATTTTAGCTGATGGACAAATGCTACACATTAAGAAAGCTGAGGTATCTGACACAGGCCAGTATGTATGTAGAGCTATAAATGTAGCAGGACGGGATGATAAAAATTTCCACCTCAATGTATATGTGCCACCCAGTATTGAAGGACCTGAAAGAGAAGTGATTGTGGAGACGATCAGCAATCCTGTGACATTAACATGTGATGCCACTGGGATCCCACCTCCCACGATAGCATGGTTAAAGAACCACAAGCGCATAGAAAATTCTGACTCACTGGAAGTTCGTATTTTGTCTGGAGGTAGCAAACTCCAGATTGCCCGGTCTCAGCATTCAGATAGTGGAAACTATACATGTATTGCTTCAAATATGGAGGGAAAAGCCCAGAAATATTACTTTCTTTCAATTCAAGTTCCTCCAAGTGTTGCTGGTGCTGAAATTCCAAGTGATGTCAGTGTCCTTCTAGGAGAAAATGTTGAGCTGGTCTGCAATGCAAATGGCATTCCTACTCCACTTATTCAATGGCTTAAAGATGGAAAGCCCATAGCTAGTGGTGAAACAGAAAGAATCCGAGTGAGTGCAAATGGCAGCACATTAAACATTTATGGAGCTCTTACATCTGACACGGGGAAATACACATGTGTTGCTACTAATCCCGCTGGAGAAGAAGACCGAATTTTTAACTTGAATGTCTATGTTACACCTACAATTAGGGGTAATAAAGATGAAGCAGAGAAACTAATGACTTTAGTGGATACTTCAATAAATATTGAATGCAGAGCCACAGGGACGCCTCCACCACAGATAAACTGGCTGAAGAATGGACTTCCTCTGCCTCTCTCCTCCCATATCCGGTTACTGGCAGCAGGACAAGTTATCAGGATTGTGAGAGCTCAGGTGTCTGATGTCGCTGTGTATACTTGTGTGGCCTCCAACAGAGCTGGGGTGGATAATAAGCATTACAATCTTCAAGTGTTTGCACCACCAAATATGGACAATTCAATGGGGACAGAGGAAATCACAGTTCTCAAAGGTAGTTCCACCTCTATGGCATGCATTACTGATGGAACCCCAGCTCCCAGTATGGCCTGGCTTAGAGATGGCCAGCCTCTGGGGCTTGATGCCCATCTGACAGTCAGCACCCATGGAATGGTCCTGCAGCTCCTCAAAGCAGAGACTGAAGATTCGGGAAAGTACACCTGCATTGCCTCAAATGAAGCTGGAGAAGTCAGCAAGCACTTTATCCTCAAGGTCCTAGAACCACCTCACATTAATGGATCTGAAGAACATGAAGAGATATCAGTAATTGTTAATAACCCACTTGAACTTACCTGCATTGCTTCTGGAATCCCAGCCCCTAAAATGACCTGGATGAAAGATGGCCGGCCCCTTCCACAGACGGATCAAGTGCAAACTCTAGGAGGAGGAGAGGTTCTTCGAATTTCTACTGCTCAGGTGGAGGATACAGGAAGATATACATGTCTGGCATCCAGTCCTGCAGGAGATGATGATAAGGAATATCTAGTGAGAGTGCATGTACCTCCTAATATTGCTGGAACTGATGAGCCCCGGGATATCACTGTGTTACGGAACAGACAAGTGACATTGGAATGCAAGTCAGATGCAGTGCCCCCACCTGTAATTACTTGGCTCAGAAATGGAGAACGGTTACAGGCAACACCTCGAGTGCGAATCCTATCTGGAGGGAGATACTTGCAAATCAACAATGCTGACCTAGGTGATACAGCCAATTATACCTGTGTTGCCAGCAACATTGCAGGAAAGACTACAAGAGAATTTATTCTCACTGTAAATGTTCCTCCAAACATAAAGGGGGGCCCCCAGAGCCTTGTAATTCTTTTAAATAAGTCAACTGTATTGGAATGCATCGCTGAAGGTGTGCCAACTCCAAGGATAACATGGAGAAAGGATGGAGCTGTTCTAGCTGGGAATCATGCAAGATATTCCATCTTGGAAAATGGATTCCTTCATATTCAATCAGCACATGTCACTGACACTGGACGGTATTTGTGTATGGCCACCAATGCTGCTGGAACAGATCGCAGGCGAATAGATTTACAGGTCCATGTTCCTCCATCTATTGCTCCGGGTCCTACCAACATGACTGTAATAGTAAATGTTCAAACTACTCTGGCTTGTGAGGCTACTGGGATACCAAAACCATCAATCAATTGGAGAAAAAATGGGCATCTTCTTAATGTGGATCAAAATCAGAACTCATACAGGCTCCTTTCTTCAGGTTCACTAGTAATTATTTCCCCTTCTGTGGATGACACTGCAACCTATGAATGTACTGTGACAAACGGTGCTGGAGATGATAAAAGAACTGTGGATCTCACTGTCCAAGTTCCACCTTCCATAGCTGATGAGCCTACAGATTTCCTAGTAACCAAACATGCCCCAGCAGTAATTACCTGCACTGCTTCGGGAGTTCCATTTCCCTCAATTCACTGGACCAAAAATGGTATAAGACTGCTTCCCAGGGGAGATGGCTATAGAATTCTGTCCTCAGGAGCAATTGAAATACTTGCCACCCAATTAAACCATGCTGGAAGATACACTTGTGTCGCTAGGAATGCGGCTGGCTCTGCACATCGACACGTGACCCTTCATGTTCATGAGCCTCCAGTCATTCAGCCCCAACCAAGTGAACTACACGTCATTCTGAACAATCCTATTTTATTACCATGTGAAGCAACAGGGACACCCAGTCCTTTCATTACTTGGCAAAAAGAAGGCATCAATGTTAACACTTCAGGCAGAAACCATGCAGTTCTTCCTAGTGGCGGCTTACAGATCTCCAGAGCTGTCCGAGAGGATGCTGGCACTTACATGTGTGTGGCCCAGAACCCGGCTGGTACAGCCTTGGGCAAAATCAAGTTAAATGTCCAAGTTCCTCCAGTCATTAGCCCTCATCTAAAGGAATATGTTATTGCTGTGGACAAGCCCATCACGTTATCCTGTGAAGCAGATGGCCTCCCTCCGCCTGACATTACATGGCATAAAGATGGGCGTGCAATTGTGGAATCTATCCGCCAGCGCGTCCTCAGCTCTGGCTCTCTGCAAATAGCATTTGTCCAGCCTGGTGATGCTGGCCATTACACGTGCATGGCAGCCAATGTAGCAGGATCAAGCAGCACAAGCACCAAGCTCACCGTCCATGTACCACCCAGGATCAGAAGTACAGAAGGACACTACACGGTCAATGAGAATTCACAAGCCATTCTTCCATGCGTAGCTGATGGAATCCCCACACCAGCAATTAACTGGAAAAAAGACAATGTTCTTTTAGCTAACTTGTTAGGAAAATACACTGCTGAACCATATGGAGAACTCATTTTAGAAAATGTTGTGCTGGAGGATTCTGGCTTCTATACCTGTGTTGCTAACAATGCTGCAGGTGAAGATACACACACTGTCAGCCTGACTGTGCATGTTCTCCCCACTTTTACTGAACTTCCTGGAGACGTGTCATTAAATAAAGGAGAACAGCTACGATTAAGCTGTAAAGCTACTGGTATTCCATTGCCCAAATTAACATGGACCTTCAATAACAATATTATTCCAGCCCACTTTGACAGTGTGAATGGACACAGTGAACTTGTTATTGAAAGAGTGTCAAAAGAGGATTCAGGTACTTATGTGTGCACCGCAGAGAACAGCGTTGGCTTTGTGAAGGCAATTGGATTTGTTTATGTGAAAGAACCTCCAGTCTTCAAAGGTGATTATCCTTCTAACTGGATTGAACCACTTGGTGGGAATGCAATCCTGAATTGTGAGGTGAAAGGAGACCCCACCCCAACCATCCAGTGGAACAGAAAGGGAGTGGATATTGAAATTAGCCACAGAATCCGGCAACTGGGCAATGGCTCCCTGGCCATCTATGGCACTGTTAATGAAGATGCCGGTGACTATACATGTGTAGCTACCAATGAAGCTGGGGTGGTGGAGCGCAGCATGAGTCTGACTCTGCAAAGTCCTCCTATTATCACTCTTGAGCCAGTGGAAACTGTTATTAATGCTGGTGGCAAAATCATATTGAATTGTCAGGCAACTGGAGAGCCTCAACCAACCATTACATGGTCCCGTCAAGGGCACTCTATTTCCTGGGATGACCGGGTTAACGTGTTGTCCAACAACTCATTATATATTGCTGATGCTCAGAAAGAAGATACCTCTGAATTTGAATGTGTTGCTCGAAACTTAATGGGTTCTGTCCTTGTCAGAGTGCCAGTCATAGTCCAGGTTCATGGTGGATTTTCCCAGTGGTCTGCATGGAGAGCCTGCAGTGTCACCTGTGGAAAAGGCATCCAAAAGAGGAGTCGTCTGTGCAACCAGCCCCTTCCAGCCAATGGTGGGAAGCCCTGCCAAGGTTCAGATTTGGAAATGCGAAACTGTCAAAATAAGCCTTGTCCAGTGGATGGTAGCTGGTCGGAATGGAGTCTTTGGGAAGAATGCACAAGGAGCTGTGGACGCGGCAACCAAACCAGGACCAGGACTTGCAATAATCCATCAGTTCAGCATGGTGGGCGGCCATGTGAAGGGAATGCTGTGGAAATAATTATGTGCAACATTAGGCCTTGCCCAGTTCATGGAGCATGGAGCGCTTGGCAGCCTTGGGGAACATGCAGCGAAAGTTGTGGGAAAGGTACTCAGACAAGAGCAAGACTTTGTAATAACCCACCACCAGCGTTTGGTGGGTCCTACTGTGATGGAGCAGAAACACAGATGCAAGTTTGCAATGAAAGAAATTGTCCAATTCATGGCAAGTGGGCGACTTGGGCCAGTTGGAGTGCCTGTTCTGTGTCATGTGGAGGAGGTGCCAGACAGAGAACAAGGGGCTGCTCCGACCCTGTGCCCCAGTATGGAGGAAGGAAATGCGAAGGGAGTGATGTCCAGAGTGATTTTTGCAACAGTGACCCTTGCCCAACCCATGGTAACTGGAGTCCTTGGAGTGGCTGGGGAACATGCAGCCGGACGTGTAACGGAGGGCAGATGCGGCGGTACCGCACATGTGATAACCCTCCTCCCTCCAATGGGGGAAGAGCTTGTGGGGGACCAGACTCCCAGATCCAGAGGTGCAACACTGACATGTGTCCTGTGGATGGAAGTTGGGGAAGCTGGCATAGTTGGAGCCAGTGCTCTGCCTCCTGTGGAGGAGGTGAAAAGACTCGGAAGCGGCTGTGCGACCATCCTGTGCCAGTTAAAGGTGGCCGTCCCTGTCCCGGAGACACTACTCAGGTGACCAGGTGCAATGTACAAGCATGTCCAGGTGGGCCCCAGCGAGCCAGAGGAAGTGTTATTGGAAATATTAATGATGTTGAATTTGGAATTGCTTTCCTTAATGCCACAATAACTGATAGCCCTAACTCTGATACTAGAATAATACGTGCCAAAATTACCAATGTACCTCGTAGTCTTGGTTCAGCAATGAGAAAGATAGTTTCTATTCTAAATCCCATTTATTGGACAACAGCAAAGGAAATAGGAGAAGCAGTCAATGGCTTTACCCTCACCAATGCAGTCTTCAAAAGAGAAACTCAAGTGGAATTTGCAACTGGAGAAATCTTGCAGATGAGTCATATTGCCCGGGGCTTGGATTCCGATGGTTCTTTGCTGCTAGATATCGTTGTGAGTGGCTATGTCCTACAGCTTCAGTCACCTGCTGAAGTCACTGTAAAGGATTACACAGAGGACTACATTCAAACAGGTCCTGGGCAGCTGTACGCCTACTCAACCCGGCTGTTCACCATTGATGGCATCAGCATCCCATACACATGGAACCACACCGTTTTCTATGATCAGGCACAGGGAAGAATGCCTTTCTTGGTTGAAACACTTCATGCATCCTCTGTGGAATCTGACTATAACCAGATAGAAGAGACACTGGGTTTTAAAATTCATGCTTCAATATCCAAAGGAGATCGCAGTAATCAGTGCCCCTCCGGGTTTACCTTAGACTCAGTTGGACCTTTTTGTGCTGATGAGGATGAATGTGCAGCAGGGAATCCCTGCTCCCATAGCTGCCACAATGCCATGGGGACTTACTACTGCTCCTGCCCTAAAGGCCTCACCATAGCTGCAGATGGAAGAACTTGTCAAGATATTGATGAGTGTGCTTTGGGTAGGCATACCTGCCACGCTGGTCAGGACTGTGACAATACGATTGGATCTTATCGCTGTGTGGTCCGTTGTGGAAGTGGCTTTCGAAGAACCTCTGATGGGCTGAGTTGTCAAGATATTAATGAATGTCAAGAATCCAGCCCCTGTCACCAGCGCTGTTTCAATGCCATAGGAAGTTTCCATTGTGGATGTGAACCTGGGTATCAGCTCAAAGGCAGAAAATGCATGGATGTGAACGAGTGTAGACAAAATGTATGCAGACCAGATCAGCACTGTAAGAACACCCGTGGTGGCTATAAGTGCATTGATCTTTGTCCAAATGGAATGACCAAGGCAGAAAATGGAACCTGTATTGATATTGATGAATGTAAAGATGGGACCCATCAGTGCAGATATAACCAGATATGTGAGAATACAAGAGGCAGCTATCGTTGTGTATGCCCAAGAGGTTATCGGTCTCAAGGAGTTGGAAGACCCTGCATGGACATTAATGAATGTGAACAAGTGCCTAAACCTTGTGCACATCAGTGCTCCAACACCCCCGGCAGCTTCAAGTGTATCTGTCCACCAGGACAACATTTATTAGGGGACGGGAAATCTTGCGCTGGATTGGAGAGGCTGCCAAATTATGGCACTCAATACAGTAGCTATAACCTTGCACGGTTCTCCCCTGTGAGAAACAACTATCAACCTCAACAGCATTACAGACAGTACTCACATCTCTACAGCTCCTACTCAGAGTATAGAAACAGCAGAACATCTCTCTCCAGGACTAGAAGGACTATTAGGAAAACTTGCCCTGAAGGCTCTGAGGCAAGCCATGACACATGTGTAGATATTGATGAATGTGAAAATACAGATGCCTGCCAGCATGAGTGTAAGAATACCTTTGGAAGTTATCAGTGCATCTGCCCACCTGGCTATCAACTCACACACAATGGAAAGACATGCCAAGATATCGATGAATGTCTGGAGCAGAATGTGCACTGTGGACCCAATCGCATGTGCTTCAACATGAGAGGAAGCTACCAGTGCATCGATACACCCTGTCCACCCAACTACCAACGGGATCCTGTTTCAGGGTTCTGCCTCAAGAACTGTCCACCCAATGATTTGGAATGTGCCTTGAGCCCATATGCCTTGGAATACAAACTCGTCTCCCTCCCATTTGGAATAGCCACCAATCAAGATTTAATCCGGCTGGTTGCATACACACAGGATGGAGTGATGCATCCCAGGACAACTTTCCTCATGGTAGATGAGGAACAGACTGTTCCTTTTGCCTTGAGGGATGAAAACCTGAAAGGAGTGGTGTATACAACACGACCACTACGAGAAGCAGAGACCTACCGCATGAGGGTCCGAGCCTCATCCTACAGTGCCAATGGGACCATTGAATATCAGACCACATTCATAGTTTATATAGCTGTGTCCGCCTATCCATACTAA MAFQLSRTTQSHCDAQESVFHRRV*GLHHVFCNRLSQTKDCLDR*RYVYRGFTQV*DDLRWYLIYQKCSSQRCRDLWLPSK*FSWNR*TEFYSQIH*SP*VDGSSE*ALGCPWGYNRYGMQNLWYSSTSS*MVQRRS*VEALNIPHY*PSLGTFEDSRNTRSGCWRLYLCSHQ*GWKSNWQDNSGCWLTSSFHTRTC*CVYGNWLKCDITLLCSGLSRTNNQMAKIRQHANFLKTFFS*FHQPTKNRSSLYFKLMGK**RNLYL*S*KPVWKDPVRDNSNSDRTCCSTYWNQPFSGQCY*RTAAYFALYSVSWKSHSRTSVD*EFSYVAPKSLHHCAQ*WEPPY*KSSASGWW*IYLCGQ*RCWDQ*QNYLCGCACSANHSAWAADTQYN*RHSSNFTMQSKWKSQTVCHLVQERRADFNQQC*VFSRS*W*SVCGITWRRGEWGVCLHCHQYSRLRQKESAANSLCKAQSVWRSTRTVPG*AC*DLRPCRGRGNTSM*SEELTSTHNYLGQRNPAHLTVLSKTHIPPFWFNEDH*NPHFR*WDVSLCCHKYCWECDSGCQIKCPCSSKDTAWT*TSQSPSWSKSGYSM*CSRDSSSCNHLVQRWKHYAG*WRAPC*QSRRNFKHRPSHALRCWHIYMCCY*HSRH**NRDNATCPRTTHSGRSRTSI*HYFPRKSGQSTH*ISMSCKRYP*TNHQMVTQW*RVDRQRAWHFYLGRWHIAGYCFCYTL*QWGVHLCGSQ*SWNHRKKI*PQSPCSSSN*R*RTSYKCVGVVKSADQSLL*SGRHSISHHYVV*R*CPGD*KQHYSDCEQWEDTEALQSHSRGCRKIFLQSN*YCRHFSEVL*H*CASSTHHNRYQLPK*SLSCPQP*RRP*MPGQRHSLS*YSLVQRWQAFIFGRS*C*TSRQRTSLTFKECTEK*QGALPMYCV*CSWQTSQGYKTDYLYST*Y*RRKCHHRHISIDQQPY*TGM*NTGTSNACHYLV*GRAANHVQLTSTLY**RTISSYSSSTGL*FSNIYVSCSQCCWNC*KIIPCGCLCSSND*RQLGHAFE*ASSYCSFSDTGVQSCWKPFSHSHLVERWCTCES**QYPHRSWWEETRNHECPRN*SRTVHMRGYQCGRRKGNQI*S*CLGATSYRRRR*NILLHCDG**LTGARLSCDRLSPTNYHVAEGWPVN**KGWIQDFIKWTQTGYCSGSSVKHRPLSVHGSKYCWRPQEGI*SDCSCSSNNQVLRPF*ESCGKIQACRLAVHSQWDSKSFHYMVKR*PACEHCPRKP*NTVFWSSSTNCQNPVGRCWQIHMCGYQRSWRNTTAHSTACS*TT*SGRCWKNAE*DCVGEQPCTAGV*GSWKSCACYYMVQR*SSTLRFHQHDFLEQRTDH*Y*KCPDLRCWHI*MRGHQLSWSYRVILQSASSCGPINFWQQ*HGGSGG**PGEVRM*SQRYSCPKSDLVERWESCF*FF*WITGSLWWSNPSIDQCTNQRHRKVHLRGSECCWRKAKGH*PPSICSAKYYGRRTECLCPH*PSCGITMSK*CYSPTYSYLVKRRPPLAEETRPQYI*K*KCVKD*RCSGSRHWSLHL*SNKCCWKN*KKLQCQHLGPPKYWWF**TYSTYSH*RESH*SVV*IKWYSTPKSHLEEERLSSAD*FHGAS*NFIWGQAITNFNC*KV*CSTLFMCGVECCWDCKERIQSASLH*TNHNQQWQPPY*NYCDPREEYLLGV*GAGYSTTNSDLDERWPPLDQGKGSRNTG*RSHPSAEEHSCI*HRPLCVCCCECSRND*QKI*LKCPCSSKHHRKPQVT*KY*CGRKELSIFDL*SFWNSPAFHNLVQRWVACQP*QFCEDSFRRQDATADADHNGRCWPIYLRCKECSW*RKKNLWAFSISTTSYCG*KYIGRCEGKRETECYADL*SDRESSARNYMAQRWAAPPRR*SPSHYIWWPFSSNYQCPGATHWKIYMFGFQSSWPQEQELQS*CICISYNCWCR**WQP*RCHCHP*QPYIFGL*SLFISSSYHHLV*GWHSFRI*PKYSYSSRRQNSADPQCTGGQCWKILLCSHE*GWRNDKAL*SEGVHSTHNQ*RGPLGARSFP*RSEDQSKQHSDLGM*SVCNSFCLPQLVQGWTAP*IR*SC*YCCEWTHTSNKGGSNIRHRTIYLCSI*HCR*R*VGF*CEYSSSSKFSETLGNRKHARYWQEW*SQRCDHQQSHFSLL*DKCCSPSYTDMVQRWPPSDLK**SIDFARRASVADSSG*SRRCWEIHMCGCE*GWRRFPSI*CPCTRAANYQGSK**SP*RGHRAGEQECTDRVFIQWQPSTKEFLAERWTALARR*PS*ISI*WTNSADSEYSNNRYRQVCVCC*EHSWECQKIF*PQCSCSSKCHWS*I*KSYRRGEQFHLFDL*GLWFSTS*PQLAQE*TAHQTEHKYSHCAWWSNSTDYSGQGIRWW*IHLYSYQSSWRKQEKVFPDCLCAPKH*RP*Q*ISFCS*CKRGNFCVFGV*VERCATSSHHLV*EWADDNRVYSCGDFS*WTNATH*ES*GI*HRPVCM*SYKCSRTG**KFPPQCICATQY*RT*KRSDCGDDQQSCDINM*CHWDPTSHDSMVKEPQAHRKF*LTGSSYFVWR*QTPDCPVSAFR*WKLYMYCFKYGGKSPEILLSFNSSSSKCCWC*NSK*CQCPSRRKC*AGLQCKWHSYSTYSMA*RWKAHS*W*NRKNPSECKWQHIKHLWSSYI*HGEIHMCCY*SRWRRRPNF*LECLCYTYN*G**R*SRETNDFSGYFNKY*MQSHRDASTTDKLAEEWTSSASLLPYPVTGSRTSYQDCESSGV*CRCVYLCGLQQSWGG**ALQSSSVCTTKYGQFNGDRGNHSSQR*FHLYGMHY*WNPSSQYGLA*RWPASGA*CPSDSQHPWNGPAAPQSRD*RFGKVHLHCLK*SWRSQQALYPQGPRTTSH*WI*RT*RDISNC**PT*TYLHCFWNPSP*NDLDERWPAPSTDGSSANSRRRRGSSNFYCSGGGYRKIYMSGIQSCRR***GISSESACTS*YCWN**APGYHCVTEQTSDIGMQVRCSAPTCNYLAQKWRTVTGNTSSANPIWREILANQQC*PR*YSQLYLCCQQHCRKDYKRIYSHCKCSSKHKGGPPEPCNSFK*VNCIGMHR*RCANSKDNMEKGWSCSSWESCKIFHLGKWIPSYSISTCH*HWTVFVYGHQCCWNRSQANRFTGPCSSIYCSGSYQHDCNSKCSNYSGL*GYWDTKTINQLEKKWASS*CGSKSELIQAPFFRFTSNYFPFCG*HCNL*MYCDKRCWR**KNCGSHCPSSTFHS**AYRFPSNQTCPSSNYLHCFGSSISLNSLDQKWYKTASQGRWL*NSVLRSN*NTCHPIKPCWKIHLCR*ECGWLCTSTRDPSCS*ASSHSAPTK*TTRHSEQSYFITM*SNRDTQSFHYLAKRRHQC*HFRQKPCSSS*WRLTDLQSCPRGCWHLHVCGPEPGWYSLGQNQVKCPSSSSH*PSSKGICYCCGQAHHVIL*SRWPPSA*HYMA*RWACNCGIYPPARPQLWLSANSICPAW*CWPLHVHGSQCSRIKQHKHQAHRPCTTQDQKYRRTLHGQ*EFTSHSSMRS*WNPHTSN*LEKRQCSFS*LVRKIHC*TIWRTHFRKCCAGGFWLLYLCC*QCCR*RYTHCQPDCACSPHFY*TSWRRVIK*RRTATIKL*SYWYSIAQINMDLQ*QYYSSPL*QCEWTQ*TCY*KSVKRGFRYLCVHRREQRWLCEGNWICLCERTSSLQR*LSF*LD*TTWWECNPEL*GERRPHPNHPVEQKGSGY*N*PQNPATGQWLPGHLWHC**RCR*LYMCSYQ*SWGGGAQHESDSAKSSYYHS*ASGNCY*CWWQNHIELSGNWRASTNHYMVPSRALYFLG*PG*RVVQQLIIYC*CSERRYL*I*MCCSKLNGFCPCQSASHSPGSWWIFPVVCMESLQCHLWKRHPKEESSVQPAPSSQWWEALPRFRFGNAKLSK*ALSSGW*LVGMESLGRMHKELWTRQPNQDQDLQ*SISSAWWAAM*RECCGNNYVQH*ALPSSWSMERLAALGNMQRKLWERYSDKSKTL**PTTSVWWVLL*WSRNTDASLQ*KKLSNSWQVGDLGQLECLFCVMWRRCQTENKGLLRPCAPVWRKEMRRE*CPE*FLQQ*PLPNPW*LESLEWLGNMQPDV*RRADAAVPHM**PSSLQWGKSLWGTRLPDPEVQH*HVSCGWKLGKLA*LEPVLCLLWRR*KDSEAAVRPSCAS*RWPSLSRRHYSGDQVQCTSMSRWAPASQRKCYWKY**C*IWNCFP*CHNN**P*L*Y*NNTCQNYQCTS*SWFSNEKDSFYSKSHLLDNSKGNRRSSQWLYPHQCSLQKRNSSGICNWRNLADESYCPGLGFRWFFAARYRCEWLCPTASVTC*SHCKGLHRGLHSNRSWAAVRLLNPAVHH*WHQHPIHMEPHRFL*SGTGKNAFLG*NTSCILCGI*L*PDRRDTGF*NSCFNIQRRSQ*SVPLRVYLRLSWTFLC**G*MCSRESLLP*LPQCHGDLLLLLP*RPHHSCRWKNLSRY**VCFG*AYLPRWSGL*QYDWILSLCGPLWKWLSKNL*WAELSRY**MSRIQPLSPALFQCHRKFPLWM*TWVSAQRQKMHGCERV*TKCMQTRSAL*EHPWWL*VH*SLSKWNDQGRKWNLY*Y**M*RWDPSVQI*PDM*EYKRQLSLCMPKRLSVSRSWKTLHGH**M*TSA*TLCTSVLQHPRQLQVYLSTRTTFIRGREILRWIGEAAKLWHSIQ*L*PCTVLPCEKQLSTSTALQTVLTSLQLLLRV*KQQNISLQD*KDY*ENLP*RL*GKP*HMCRY**M*KYRCLPA*V*EYLWKLSVHLPTWLSTHTQWKDMPRYR*MSGAECALWTQSHVLQHERKLPVHRYTLSTQLPTGSCFRVLPQELSTQ*FGMCLEPICLGIQTRLPPIWNSHQSRFNPAGCIHTGWSDASQDNFPHGR*GTDCSFCLEG*KPERSGVYNTTTTRSRDLPHEGPSLILQCQWDH*ISDHIHSLYSCVRLSIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28816 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary star-fusion TRUE TRUE TRUE 340 FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78386948:+ chr16:78133297-79246564:+ chr16:78420845:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77816921:+ chr16:77822461-78014004:+ chr16:77850818:+ chr16:78410328,chr16:78410324 chr16:77809665,chr16:77809658 NA NA chr16:78444225,chr16:78444221 chr16:77843562,chr16:77843555 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WW|18-47|9.7e-14^WW|59-88|5.1e-11^adh_short|125-262|1.1e-24^KR|127-250|1.1e-10^Epimerase|127-261|1e-05^adh_short_C2|131-262|1.8e-17^adh_short|286-327|1.1e-05^adh_short_C2|292-326|0.0065 Rep_4|235-317|5.1e-05^ADH_zinc_N_2|236-378|1.4e-15 ["WWOX:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.12Mb] 60 21 60 21 ONLY_REF_SPLICE YES_LDAS 0.9505 GT 1.8892 AG 1.8323 ENST00000683929.1 1-605 ENST00000302536.3 234-1260 chr16|+|[0]78099779-78099885[1]|[2]78108423-78108487[0]|[1]78109778-78109835[1]|[2]78114976-78115154[0]|[1]78164183-78164289[2]|[0]78386860-78386948[1]<==>chr16|+|[2]77816921-77817050[2]|[0]77825246-77825461[2]|[0]77862748-77862890[1]|[2]77876370-77876473[0]|[1]77879169-77879224[2]|[0]77884608-77884802[2]|[0]77971850-77971933[2]|[0]77977597-77977695[2] atggcagcgctgcgctacgcggggctggacgacacggacagtgaggacgagctgcctccgggctgggaggagagaaccaccaaggacggctgggtttactacgccaatcacaccgaggagaagactcagtgggaacatccaaaaactggaaaaagaaaacgagtggcaggagatttgccatacggatgggaacaagaaactgatgagaacggacaagtgttttttgttgaccatataaataaaagaaccacctacttggacccaagactggcgtttactgtggatgataatccgaccaagccaaccacccggcaaagatacgacggcagcaccactgccatggaaattctccagggccgggatttcactggcaaagtggttgtggtcactggagctaattcaggaatagggttcgaaaccgccaagtcttttgccctccatggtgcacatgtgatcttggcctgcaggaacatggcaagggcgagtgaagcagtgtcacgcattttagaagaatggcataaagccaaggtagaagcaatgaccctggacctcgctctgctccgtagcgtgcagcattttgctgaagcattcaaggccaagaatgtTGGATTAAACTTCATTGACTTGATGGTGCGACAAGGGAATATTGACAACCCTCCCAAGACTCCCCTGGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGGACAGCGTGAAAGGATATGAGATTGGAGACCGTGTCATGGCATTTGTCAATTACAATGCCTGGGCAGAGGTGGTCTGCACACCAGTGGAGTTTGTCTACAAGATCCCGGATGACATGAGCTTCTCCGAGGCTGCTGCATTCCCCATGAACTTCGTCACAGCCTATGTGATGCTGTTTGAAGTTGCCAACCTCCGGGAAGGGATGTCTGTGCTCGTGCACTCAGCTGGTGGGGGCGTGGGTCAAGCTGTGGCTCAGCTGTGTTCCACTGTCCCCAACGTGACTGTCTTTGGAACAGCCTCTACTTTCAAGCATGAAGCAATCAAAGACTCTGTGACCCACCTCTTTGACAGAAATGCAGACTACGTGCAAGAAGTTAAAAGAATCTCTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGGGACAACACTGGAAAAGGTCTCAGTCTTCTCAAACCCCTGGGAACCTACATTTTATATGGCTCATCCAACATGGTAACTGGAGAGACCAAGAGCTTCTTCAGCTTTGCAAAATCATGGTGGCAGGTGGAGAAGGTGAACCCCATCAAGCTGTATGAGGAGAACAAAGTCATCGCGGGGTTTTCCCTTTTAAATCTGCTCTTCAAACAAGGCCGGGCGGGCCTCATTCGGGGAGTGGTGGAAAAACTCATAGGGCTCTACAACCAGAAGAAGATCAAGCCTGTGGTGGACTCCTTGTGGGCTCTGGAGGAGGTGAAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGCAAGTTAATTCTGGATGTAGAAAAGACCCCAACTCCACTGATGGCCAATGACAGCACAGAGACCAGTGAAGCAGGGGAAGAGGAGGAGGACCACGAGGGAGACAGCGAGAACAAGGAGCGGATGCCCTTTATCCAGTAA MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSENKERMPFIQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 FALSE,FALSE 78005747,77850818 FALSE,TRUE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28818 POC5::CERT1 ENSG00000152359.15::ENSG00000113163.19 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary star-fusion TRUE FALSE TRUE 342 FALSE NA FALSE NA POC5 ENSG00000152359.15 protein_coding - - chr5:75674124-75717448:- chr5:75685207:- chr5:74969949-75013273:- chr5:74981032:- CERT1 ENSG00000113163.19 protein_coding - - chr5:75356345-75512138:- chr5:75426478:- chr5:74652170-74807963:- chr5:74722303:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TMF_TATA_bd|191-239|0.0088^zf-C4H2|192-408|4.9e-05^CENP-F_leu_zip|192-245|0.0013^DUF16|197-250|0.0012^CC2-LZ|198-268|0.0008^Fungal_TACC|205-235|0.13^vATP-synt_E|211-211|2.9^Fungal_TACC|305-352|8.2e-05^TMF_TATA_bd|309-350|0.0029^DUF16|310-372|0.17^CC2-LZ|317-372|0.012^vATP-synt_E|320-389|7.1e-06^CENP-F_leu_zip|320-353|0.0055 START|415-618|1.8e-31 none 40 21 40 21 ONLY_REF_SPLICE YES_LDAS 0.7158 GT 1.7968 AG 1.9086 ENST00000428202.7 1-1407 ENST00000261415.12 349-1875 chr5|-|[2]75685207-75685484[1]|[0]75689012-75689165[0]|[2]75690383-75690562[0]|[2]75692396-75692500[0]|[2]75694655-75694831[0]|[2]75702605-75702810[1]|[0]75705704-75705787[1]|[0]75707737-75707875[0]|[2]75712854-75712937[0]<==>chr5|-|[2]75379346-75379473[1]|[0]75381072-75381201[0]|[2]75381949-75382077[0]|[2]75384642-75384712[1]|[0]75385902-75386034[0]|[2]75389592-75389687[0]|[2]75399310-75399387[0]|[2]75400205-75400297[0]|[2]75402972-75403058[0]|[2]75411011-75411103[0]|[2]75416876-75417033[1]|[0]75419341-75419424[1]|[0]75425361-75425499[0]|[2]75426371-75426478[0] atgtcatcagatgaggagaaatactcacttccagttgtgcaaaatgactccagtcgaggcagttctgtctcttcgaatcttcaggaagaatatgaagaactgcttcattatgctatagtgactccaaatattgaaccctgtgcttcacagtcatctcatcctaagggagaattggtgccagatgtcagaatttctacaattcatgatattcttcatagtcaaggaaataactctgaagtaagagaaactgcaatagaagttggaaaaggatgtgatttccatatttcaagtcattcaaagacagatgagtcatcaccagtgttatcgccaaggaagccttctcacccagtcatggattttttcagttcacatcttttagctgactcttcctcaccagcaacaaattctagtcatacagatgcccatgaaatacttgtgagcgattttcttgtttctgatgaaaaccttcagaagatggaaaatgtgcttgatctttggagttcaggtcttaagacaaacatcatatctgaactaagtaaatggagacttaattttattgactggcaccgaatggaaatgagaaaagagaaagaaaaacatgcagcacatttaaaacaactgtgtaatcagatcaatgaattgaaggagctgcaaaaaacctttgaaatctccattgggagaaaagatgaggtgatttctagcttgtctcatgccataggcaagcaaaaggaaaagatagagttgatgagaacattcttccactggcgaatcggccatgtcagagccagacaggatgtttatgaaggtaaactagctgaccagtactaccagagaactttactgaagaaagtctggaaagtctggcgttccgtagtgcaaaagcagtggaaagatgtggtagaaagagcttgtcaagcaagagctgaagaagtttgtatccagatttccaatgattatgaagccaaagttgctatgttatctggagctttggaaaatgcaaaagctgagattcaaagaatgcaacatgaaaaagagcactttgaagattccatgaaaaaagctttcatgaggggtgtatgtgcattaaatcttgaagccatgactatatttcaaaacagaaatgatgcagggatagactccacaaataataaaaaggaagagtatggtcctggtgttcaaggaaaagaacattctgctcatttggatccttcagctcctccgatgcccttaccagttacatcaccactgctgccatccccaccagccgccgtcggaggagccagcgcgactgccgttccctcagctgcttcgatgacttctaccagggctgcttccgcatcttctgttcacgttcctgtttctgctcttggtgcaggatctgcagctactgctgcatcagaagaaatgACTGAATCTGGATATGGATCTGAATCCAGCTTGCGTCGACATGGCTCAATGGTGTCCCTGGTGTCTGGAGCAAGTGGCTACTCTGCAACATCCACCTCTTCATTCAAGAAAGGCCACAGTTTACGTGAGAAGTTGGCTGAAATGGAAACATTTAGAGACATCTTATGTAGACAAGTTGACACGCTACAGAAGTACTTTGATGCCTGTGCTGATGCTGTCTCTAAGGATGAACTTCAAAGGGATAAAGTGGTAGAAGATGATGAAGATGACTTTCCTACAACGCGTTCTGATGGTGACTTCTTGCATAGTACCAACGGCAATAAAGAAAAGTTATTTCCACATGTGACACCAAAAGGAATTAATGGTATAGACTTTAAAGGGGAAGCGATAACTTTTAAAGCAACTACTGCTGGAATCCTTGCAACACTTTCTCATTGTATTGAACTAATGGTTAAACGTGAGGACAGCTGGCAGAAGAGACTGGATAAGGAAACTGAGAAGAAAAGAAGAACAGAGGAAGCATATAAAAATGCAATGACAGAACTTAAGAAAAAATCCCACTTTGGAGGACCAGATTATGAAGAAGGCCCTAACAGTCTGATTAATGAAGAAGAGTTCTTTGATGCTGTTGAAGCTGCTCTTGACAGACAAGATAAAATAGAAGAACAGTCACAGAGTGAAAAGGTGAGATTACATTGGCCTACATCCTTGCCCTCTGGAGATGCCTTTTCTTCTGTGGGGACACATAGATTTGTCCAAAAGCCCTATAGTCGCTCTTCCTCCATGTCTTCCATTGATCTAGTCAGTGCCTCTGATGATGTTCACAGATTCAGCTCCCAGGTTGAAGAGATGGTGCAGAACCACATGACTTACTCATTACAGGATGTAGGCGGAGATGCCAATTGGCAGTTGGTTGTAGAAGAAGGAGAAATGAAGGTATACAGAAGAGAAGTAGAAGAAAATGGGATTGTTCTGGATCCTTTAAAAGCTACCCATGCAGTTAAAGGCGTCACAGGACATGAAGTCTGCAATTATTTCTGGAATGTTGACGTTCGCAATGACTGGGAAACAACTATAGAAAACTTTCATGTGGTGGAAACATTAGCTGATAATGCAATCATCATTTATCAAACACACAAGAGGGTGTGGCCTGCTTCTCAGCGAGACGTATTATATCTTTCTGTCATTCGAAAGATACCAGCCTTGACTGAAAATGACCCTGAAACTTGGATAGTTTGTAATTTTTCTGTGGATCATGACAGTGCTCCTCTAAACAACCGATGTGTCCGTGCCAAAATAAATGTTGCTATGATTTGTCAAACCTTGGTAAGCCCACCAGAGGGAAACCAGGAAATTAGCAGGGACAACATTCTATGCAAGATTACATATGTAGCTAATGTGAACCCTGGAGGATGGGCACCAGCCTCAGTGTTAAGGGCAGTGGCAAAGCGAGAGTATCCTAAATTTCTAAAACGTTTTACTTCTTACGTCCAAGAAAAAACTGCAGGAAAGCCTATTTTGTTCTAG MSSDEEKYSLPVVQNDSSRGSSVSSNLQEEYEELLHYAIVTPNIEPCASQSSHPKGELVPDVRISTIHDILHSQGNNSEVRETAIEVGKGCDFHISSHSKTDESSPVLSPRKPSHPVMDFFSSHLLADSSSPATNSSHTDAHEILVSDFLVSDENLQKMENVLDLWSSGLKTNIISELSKWRLNFIDWHRMEMRKEKEKHAAHLKQLCNQINELKELQKTFEISIGRKDEVISSLSHAIGKQKEKIELMRTFFHWRIGHVRARQDVYEGKLADQYYQRTLLKKVWKVWRSVVQKQWKDVVERACQARAEEVCIQISNDYEAKVAMLSGALENAKAEIQRMQHEKEHFEDSMKKAFMRGVCALNLEAMTIFQNRNDAGIDSTNNKKEEYGPGVQGKEHSAHLDPSAPPMPLPVTSPLLPSPPAAVGGASATAVPSAASMTSTRAASASSVHVPVSALGAGSAATAASEEMTESGYGSESSLRRHGSMVSLVSGASGYSATSTSSFKKGHSLREKLAEMETFRDILCRQVDTLQKYFDACADAVSKDELQRDKVVEDDEDDFPTTRSDGDFLHSTNGNKEKLFPHVTPKGINGIDFKGEAITFKATTAGILATLSHCIELMVKREDSWQKRLDKETEKKRRTEEAYKNAMTELKKKSHFGGPDYEEGPNSLINEEEFFDAVEAALDRQDKIEEQSQSEKVRLHWPTSLPSGDAFSSVGTHRFVQKPYSRSSSMSSIDLVSASDDVHRFSSQVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETTIENFHVVETLADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGGWAPASVLRAVAKREYPKFLKRFTSYVQEKTAGKPILF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Collagen type IV alpha-3-binding protein Atypical Col4A3BP Q9Y5P4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28819 KCTD21::GAB2 ENSG00000188997.8::ENSG00000033327.13 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary star-fusion TRUE TRUE TRUE 345 TRUE 672 TRUE 243 KCTD21 ENSG00000188997.8 protein_coding - - chr11:78171249-78188626:- chr11:78188573:- chr11:77882295-77899672:- chr11:77899619:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78223676:- chr11:77926339-78129394:- chr11:77934722:- chr11:78179546,chr11:78179556 chr11:78224346,chr11:78224353 NA NA chr11:77890592,chr11:77890602 chr11:77935392,chr11:77935399 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GAB2:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.03Mb];LOCAL_REARRANGEMENT:-:[26475] 22 0 22 0 ONLY_REF_SPLICE YES_LDAS 0.2582 GT 1.3383 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28833 KCTD21::GAB2 ENSG00000188997.8::ENSG00000033327.13 KYM1 SRR8615391 SRR8652071 SOFT_TISSUE rhabdomyosarcoma primary star-fusion TRUE TRUE TRUE 344 TRUE 672 TRUE 243 KCTD21 ENSG00000188997.8 protein_coding - - chr11:78171249-78188626:- chr11:78186681:- chr11:77882295-77899672:- chr11:77897727:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78223676:- chr11:77926339-78129394:- chr11:77934722:- chr11:78179546,chr11:78179556 chr11:78224346,chr11:78224353 NA NA chr11:77890592,chr11:77890602 chr11:77935392,chr11:77935399 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GAB2:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.03Mb];LOCAL_REARRANGEMENT:-:[26475] 5 4 5 4 ONLY_REF_SPLICE YES_LDAS 0.1056 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28836 IQGAP1::FAM174B ENSG00000140575.13::ENSG00000185442.13 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 349 TRUE 4744 TRUE 1792 IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90390873:+ chr15:90931474-91045471:+ chr15:90934105:+ FAM174B ENSG00000185442.13 protein_coding - - chr15:92617448-92809884:- chr15:92630345:- chr15:93160678-93353114:- chr15:93173575:- chr15:90397907,chr15:90397889,chr15:90397906 chr15:92659238,chr15:92659238,chr15:92659239 NA NA chr15:90941139,chr15:90941121,chr15:90941138 chr15:93202468,chr15:93202468,chr15:93202469 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH-PARTIAL|48-155~|1e-19^CAMSAP_CH|61-96|3.8e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:2.12Mb] 47 35 47 30.46 ONLY_REF_SPLICE YES_LDAS 0.8613 GT 1.2867 AG 1.7465 ENST00000268182.10 1-155 ENST00000327355.6 345-480 chr15|+|[0]90388342-90388396[0]|[1]90390774-90390873[1]<==>chr15|-|[2]92619456-92619459[2]|[1]92630214-92630345[2] atgtccgccgcagacgaggttgacgggctgggcgtggcccggccgcactatggctctgtcctggataatgaaagacttactgcagaggagatggatgaaaggagacgtcagaacgtggcttatgagtacctttgtcatttggaagaagcgaagagGTCGGGAAAGAGGTTAAAGAAGACACGCAAGTATGATATCATCACCACTCCAGCAGAGCGAGTGGAAATGGCGCCACTAAATGAAGAGGATGATGAAGATGAGGACTCCACAGTATTCGACATCAAATACAGGTAA MSAADEVDGLGVARPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKRSGKRLKKTRKYDIITTPAERVEMAPLNEEDDEDEDSTVFDIKYR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28837 LUZP1::TMCO4 ENSG00000169641.15::ENSG00000162542.14 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 350 FALSE NA FALSE NA LUZP1 ENSG00000169641.15 protein_coding - - chr1:23084030-23177808:- chr1:23168766:- chr1:23410523-23504301:- chr1:23495259:- TMCO4 ENSG00000162542.14 protein_coding - - chr1:19682240-19799945:- chr1:19683444:- chr1:20008733-20126438:- chr1:20009937:- chr1:23122400,chr1:23122408 chr1:19693507,chr1:19693512 NA NA chr1:23448893,chr1:23448901 chr1:20020000,chr1:20020005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:3.28Mb] 41 0 41 0 ONLY_REF_SPLICE YES_LDAS 0.4558 GT 1.7968 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28839 LRBA::SH3D19 ENSG00000198589.15::ENSG00000109686.20 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 351 FALSE NA FALSE NA LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150761783:- chr4:151185587-151936879:- chr4:151682935:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151149561:- chr4:152023903-152246757:- chr4:152070713:- chr4:150745207,chr4:150745213 chr4:151150943,chr4:151150946 NA NA chr4:151666359,chr4:151666365 chr4:152072095,chr4:152072098 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Neurobeachin|62-197|3.2e-12^Laminin_G_3|215-376|4.7e-15^PH_BEACH|292-311|5.5^DUF4704|442-921|4.4e-177^PH_BEACH|913-934|0.32^DUF1088|1880-2046|2.1e-77^PH_BEACH|2073-2169|1.2e-30^Beach|2202-2478|2.1e-125^SUKH_6|2245-2292|0.0001^NBCH_WD40|2570-2837|1.5e-46^WD40|2589-2613|0.025^WD40|2618-2658|2.8e-05^WD40|2679-2705|0.011^Laminin_G_3|2741-2766|2.5^WD40|2759-2791|0.00017^WD40|2800-2835|0.002 none ["LRBA:Oncogene"];["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr4:0.09Mb];LOCAL_REARRANGEMENT:-:[87024] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1445 GT 1.7819 AG 1.5628 ENST00000510413.5 1-5645 ENST00000409252.6 916-2373 chr4|-|[1]150761783-150761847[0]|[2]150798081-150798142[1]|[0]150806271-150806404[2]|[1]150808320-150808398[1]|[0]150817124-150817257[2]|[1]150828180-150828621[1]|[0]150831817-150831976[0]|[2]150844100-150844207[0]|[2]150844658-150844779[1]|[0]150848818-150848998[0]|[2]150849422-150849575[2]|[1]150850724-150850902[0]|[2]150851885-150852943[0]|[2]150867671-150867863[2]|[1]150868182-150868305[1]|[0]150870525-150870606[0]|[2]150871345-150871453[2]|[1]150872663-150872755[2]|[1]150893052-150893149[0]|[2]150896394-150896456[0]|[2]150897739-150897818[1]|[0]150900049-150900217[0]|[2]150905838-150905990[0]|[2]150906297-150906405[2]|[1]150908334-150908467[0]|[2]150908660-150908857[0]|[2]150914195-150914341[0]|[2]150915608-150915727[0]|[2]150916401-150916527[2]|[1]150916617-150916738[0]|[2]150921198-150921293[0]|[2]150928516-150928616[1]|[0]150928834-150929065[0]|[2]151014427-151014642[0]<==>chr4|-|[2]151122091-151122207[0]|[2]151127618-151127715[1]|[0]151128170-151128356[0]|[2]151132331-151132383[1]|[0]151133034-151133236[2]|[1]151135074-151135132[0]|[2]151137732-151137862[1]|[0]151139775-151139847[0]|[2]151143910-151144050[0]|[2]151144220-151144288[0]|[2]151147922-151148186[2]|[1]151149500-151149561[0] atggctagcgaagacaatcgtgtcccttccccgccaccaacaggtgatgacgggggaggtggagggagagaagaaacccctactgaagggggtgcattgtctctgaaaccagggctccccatcaggggcatcagaatgaaatttgccgtgttgaccggtttggttgaagttggagaagtatccaatagggatattgtagaaactgtctttaacctgttggtaggaggacagtttgatctggaaatgaatttcattatccaagaaggtgagagtattaactgcatggtggacctactggaaaaatgtgacattacgtgccaagcagaagtctggagcatgtttacagccattctgaagaaaagcatacggaatcttcaagtctgcactgaagtaggccttgttgaaaaagtgcttgggaaaattgaaaaagttgacaatatgatagcagatcttttggttgacatgttgggagtgctggctagctataatttgacagttcgcgagctaaagcttttcttcagtaaacttcaaggagataaaggacgatggcctccacatgctgggaagttgctgtctgtgttaaagcatatgcctcagaagtatggtcctgatgccttttttaactttccaggaaagagtgctgcagctattgcattacctcctatagccaaatggccataccagaatggttttacatttcatacatggcttagaatggatcctgtaaataacatcaatgtagataaggataaaccatatttgtattgtttcagaaccagcaaaggtcttggctattctgctcattttgttggaggctgtttgattgtaacatcaataaagtcaaaaggaaaaggctttcaacactgtgtgaaatttgatttcaagccacaaaagtggtatatggttaccatagtacacatctataaccgatggaagaatagtgaacttcgatgttatgtgaatggtgagctggcttcctatggagagataacatggtttgtcaacactagcgatacctttgacaaatgtttcctgggctcatcagaaacagcagatgctaatagagtattctgtggtcagatgactgcagtttaccttttcagtgaagctctaaatgcagctcagatatttgctatttatcagttgggcctgggatacaagggtacatttaaattcaaagcagaaagcgaccttttccttgctgagcatcacaaacttttattgtacgatgggaaactctctagtgccattgcattcacgtacaatccacgggctacagatgcccagctttgtcttgaatcatctcctaaggacaacccttcaatttttgttcattcaccacatgcactcatgctccaggatgtaaaggcagttttaacacattccatccaaagtgcaatgcattcaattggaggagtacaagtactatttccactttttgcacagttggattacaggcaatatttgtctgatgagattgatttgactatatgttcaaccttgctggcctttatcatggaattgttgaagaactcaattgctatgcaggaacagatgcttgcctgtaagggcttcttggtaataggatatagccttgaaaagtcttccaaatctcatgttagcagagcagtacttgaactttgccttgcattttcaaaatatctgagtaatctgcagaatgggatgcccctgctcaagcaattgtgtgatcacgttcttcttaatcctgccatatggattcataccccagccaaggttcaactgatgctctatacttatctgtccacggaattcattggtacagtcaacatatataacaccattcggagagttggaacagtgcttctcatcatgcacacgctgaagtactactactgggcagtgaatcctcaggatcgaagtggtatcaccccaaaaggattagatggaccgcgacctaatcaaaaagaaatgctttctctacgagcattcttgttgatgttcattaagcaattagtgatgaaggattctggagtaaaggaagatgaattacaggccattcttaattacctactgactatgcatgaggatgacaatctaatggatgtcctacagctgcttgttgcattaatgtcagaacaccctaactctatgattcctgcttttgaccaaaggaatgggttacgtgttatctacaaacttctggcatcgaaaagtgaaggaatcagggtacaagctcttaaggcaatgggttattttttaaaacatctggccccaaagaggaaagcagaagtcatgcttggacatggattgttttcattgctagctgaaaggctcatgcttcagacaaatttaatcacaatgaccacatataatgtgctgtttgagattcttatagaacagattggtactcaggtgatacataaacagcatccagatcctgattcttcagtgaagatacaaaaccctcagatactaaaagtaattgcgaccctacttcgaaattctccccagtgcccagagagcatggaggttcgcagagcctttctttctgacatgattaaactttttaataacagtagagaaaacaggaggagcttgctacaatgctctgtgtggcaagaatggatgctttctctctgctattttaatcctaagaattcagatgagcaaaagataacagaaatggtatacgccatattcagaatcctgctttaccatgcagtcaaatatgagtggggtggctggcgtgtatgggtagacactttatcaatcactcattcaaaggtcacttttgaaatacacaaagaaaaccttgccaatatatttagggaacagcaaggaaaagttgatgaagaaatagggctgtgttcttcaacttcagttcaagcagcctctggcattagaagggatattaatgtttcagtaggatcccagcaaccagatacgaaggattctcctgtctgtcctcatttcaccacaaatggtaatgaaaattcaagtatagagaagacaagttcactagaatctgcatctaatattgaactgcaaactactaatacatcttatgaagaaatgaaagctgagcaagaaaatcaggagttaccagatgaaggcactttggaagaaacactgacaaatgagacaaggaatgcagatgatttagaagtatcttctgacataatagaagctgtggctatttcctctaattcttttataacaactggcaaagattcaatgactgtcagtgaagtaactgcttctataagttctccttcagaagaggatgcctcagagatgccagaattcttggataaatctatagtagaggaagaggaagatgatgattatgtggaactgaaagtagaaggcagtcctactgaggaagctaatctacccacagagctccaagataacagtttgtctccagctgcatctgaagccggtgaaaaactggacatgtttggtaatgatgacaaattaatatttcaagaaggaaaacctgttactgaaaagcaaactgatactgaaactcaagattctaaagattctggaattcagactatgacagcatcagggtcttcagctatgtcaccagaaactactgtttcccaaatagctgtagaatcagaccttggtcagatgctggaggaagggaagaaagcaactaacctcactagagaaaccaaattaattaatgattgtcatggtagtgtctctgaggcttcttctgagcaaaagattgcgaagttggatgtttccaatgttgctacagatactgagaggctggagttgaaggccagtcccaacgtggaagcacctcaacctcatcgacatgtgcttgagatatcaaggcaacatgagcagccagggcaaggaatagcaccagatgcagttaatggacaaaggagggattccagatctactgtgtttcgtattcctgagttcaactggtctcagatgcatcaacgtttgctcactgatctattattttcaatagaaacagatatacagatgtggagaagccattcaacaaagacagttatggacttcgtgaatagcagtgataatgtcatctttgtacacaacacaattcatctcatctctcaagtgatggacaatatggtcatggcttgtgggggtatactgccattgctttcagctgctacatcggctacacatgaactggaaaatattgaacctactcaaggcctttcaatagaagcctctgtgacatttttgcagaggctaattagccttgtggatgtgcttatatttgcaagttctcttggctttactgaaattgaagctgaaaaaagtatgtcatctggaggaattttgcggcagtgtctccgactagtttgtgcagtcgcagtaaggaattgcttggagtgtcaacagcattcacaactgaaaactaggggagataaagccttgaaaccaatgcatagccttattcctttagggaaatctgcagcgaagagcccagtggacattgtgactggcggtatatctccagtaagagatcttgacaggcttctacaggacatggatattaatcggcttagggcagttgttttcagagacatagaggatagcaaacaagctcaatttttagccttggcagtagtatactttatctctgttcttatggtctccaagtacagagacattttggaaccccaaaatgaaaggcatagccagtcatgtacagaaactggcagtgaaaatgagaatgtatcactctctgaaatcacaccagcagcattcagcactttaactacggcatcagtggaagaatctgaaagcacatcatctgctcgaaggagggactcaggcattggggaagaaacagccactggtttaggaagccatgtggaagtaactcctcacacagcacctcctggtgtcagtgcaggcccagatgcaatcagcgaggtgctatctactctttctttagaagtcaataagtctccggaaaccaaaaatgatagaggaaatgacttggacactaaggctacaccgtcagtttcagtttcaaaaaacgtcaatgtgaaagacattctccgaagcttggttaacataccagcagatggagtcacagtggatcctgcccttctgccaccagcctgccttggagcccttggtgatctatctgtggaacaacccgtgcagttcagatcttttgacagaagtgtcattgttgcagcaaaaaagtcagcagtctcaccttccacctttaatacaagcatacctaccaatgctgtcagtgtggtttcctcagtagattcagcccaagcctcagatatgggaggagaatcaccaggcagtagatcatctaatgcaaaattgccctcagttccaacagttgattcagtttcacaagatccggtttcaaatatgagtattacagagaggcttgaacacgctttggaaaaggcagctcctctccttcgtgagatttttgtggattttgcaccttttctttctcggacacttttgggtagccatggacaagaactgcttatagaaggaacaagtctggtttgcatgaagtcgagtagttcagttgtggaattggttatgctactgtgttctcaggagtggcaaaattctattcagaagaatgcaggccttgcttttatcgaacttgtcaatgaaggaagGAATCCAACCACCCAGGTCAAACAGGAGGTTTTGTGCGAGTACCCCCAAGGTTGCCACCGAGACCTGTGAATGGAAAAACCATTCCAACTCAACAGCCTCCAACCAAGGTGCCCCCTGAGAGACCACCTCCCCCAAAGCTTTCTGCAACCAGAAGATCTAATAAGAAACTGCCTTTTAATCGATCCTCTTCTGACATGGATCTTCAGAAAAAACAAAGTAACTTGGCAACTGGACTCTCAAAAGCCAAGAGTCAAGTTTTTAAAAATCAAGATCCGGTGCTACCCCCTCGTCCCAAACCAGGACACCCTCTCTACAGTAAATACATGCTGTCTGTGCCTCATGGAATTGCCAATGAAGATATTGTCTCTCAAAACCCCGGAGAACTCTCTTGTAAGCGTGGGGATGTACTTGTGATGCTGAAGCAGACGGAAAATAATTACTTGGAGTGCCAAAAGGGAGAAGACACTGGCAGAGTTCACCTGTCTCAAATGAAGATTATCACTCCACTTGATGAACATCTTAGAAGCAGACCAAACGATCCAAGCCACGCTCAGAAGCCTGTTGACAGTGGTGCTCCTCATGCTGTCGTTCTTCATGATTTCCCAGCAGAGCAAGTTGATGATTTGAACCTCACTTCTGGAGAAATTGTTTATCTTCTGGAGAAGATAGATACAGATTGGTACAGAGGGAACTGTAGAAACCAGATTGGCATATTTCCTGCCAACTATGTCAAAGTGATTATTGATATCCCAGAAGGAGGAAATGGGAAAAGAGAATGTGTTTCATCTCATTGTGTTAAAGGCTCAAGATGTGTTGCTCGGTTTGAATATATTGGAGAGCAGAAGGATGAGTTGAGTTTCTCAGAGGGAGAAATTATTATTCTTAAAGAGTATGTGAATGAGGAATGGGCCAGAGGAGAAGTTCGAGGCAGAACTGGGATTTTCCCCCTGAACTTTGTGGAGCCTGTTGAGGATTATCCCACCTCTGGTGCAAATGTTTTAAGCACAAAGGTACCACTGAAAACCAAAAAAGAAGATTCTGGCTCAAACTCTCAGGTTAACAGTCTTCCGGCAGAATGGTGTGAAGCTCTTCACAGTTTTACAGCAGAGACCAGTGATGACTTATCATTCAAGAGGGGAGACCGGATCCAGATTCTGGAACGTCTGGATTCTGACTGGTGCAGGGGCAGACTGCAGGACAGGGAGGGGATCTTCCCAGCAGTGTTTGTGAGGCCCTGCCCAGCTGAGGCAAAAAGTATGTTGGCCATAGTACCGAAGGGGAGGAAGGCCAAAGCCTTATATGATTTCCGAGGGGAGAATGAAGATGAACTTTCCTTCAAGGCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAG MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAKVQLMLYTYLSTEFIGTVNIYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGLDGPRPNQKEMLSLRAFLLMFIKQLVMKDSGVKEDELQAILNYLLTMHEDDNLMDVLQLLVALMSEHPNSMIPAFDQRNGLRVIYKLLASKSEGIRVQALKAMGYFLKHLAPKRKAEVMLGHGLFSLLAERLMLQTNLITMTTYNVLFEILIEQIGTQVIHKQHPDPDSSVKIQNPQILKVIATLLRNSPQCPESMEVRRAFLSDMIKLFNNSRENRRSLLQCSVWQEWMLSLCYFNPKNSDEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSITHSKVTFEIHKENLANIFREQQGKVDEEIGLCSSTSVQAASGIRRDINVSVGSQQPDTKDSPVCPHFTTNGNENSSIEKTSSLESASNIELQTTNTSYEEMKAEQENQELPDEGTLEETLTNETRNADDLEVSSDIIEAVAISSNSFITTGKDSMTVSEVTASISSPSEEDASEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKLDMFGNDDKLIFQEGKPVTEKQTDTETQDSKDSGIQTMTASGSSAMSPETTVSQIAVESDLGQMLEEGKKATNLTRETKLINDCHGSVSEASSEQKIAKLDVSNVATDTERLELKASPNVEAPQPHRHVLEISRQHEQPGQGIAPDAVNGQRRDSRSTVFRIPEFNWSQMHQRLLTDLLFSIETDIQMWRSHSTKTVMDFVNSSDNVIFVHNTIHLISQVMDNMVMACGGILPLLSAATSATHELENIEPTQGLSIEASVTFLQRLISLVDVLIFASSLGFTEIEAEKSMSSGGILRQCLRLVCAVAVRNCLECQQHSQLKTRGDKALKPMHSLIPLGKSAAKSPVDIVTGGISPVRDLDRLLQDMDINRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERHSQSCTETGSENENVSLSEITPAAFSTLTTASVEESESTSSARRRDSGIGEETATGLGSHVEVTPHTAPPGVSAGPDAISEVLSTLSLEVNKSPETKNDRGNDLDTKATPSVSVSKNVNVKDILRSLVNIPADGVTVDPALLPPACLGALGDLSVEQPVQFRSFDRSVIVAAKKSAVSPSTFNTSIPTNAVSVVSSVDSAQASDMGGESPGSRSSNAKLPSVPTVDSVSQDPVSNMSITERLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSVVELVMLLCSQEWQNSIQKNAGLAFIELVNEGRNPTTQVKQEVLCEYPQGCHRDL*MEKPFQLNSLQPRCPLRDHLPQSFLQPEDLIRNCLLIDPLLTWIFRKNKVTWQLDSQKPRVKFLKIKIRCYPLVPNQDTLSTVNTCCLCLMELPMKILSLKTPENSLVSVGMYL*C*SRRKIITWSAKREKTLAEFTCLK*RLSLHLMNILEADQTIQATLRSLLTVVLLMLSFFMISQQSKLMI*TSLLEKLFIFWRR*IQIGTEGTVETRLAYFLPTMSK*LLISQKEEMGKENVFHLIVLKAQDVLLGLNILESRRMS*VSQREKLLFLKSM*MRNGPEEKFEAELGFSP*TLWSLLRIIPPLVQMF*AQRYH*KPKKKILAQTLRLTVFRQNGVKLFTVLQQRPVMTYHSRGETGSRFWNVWILTGAGADCRTGRGSSQQCL*GPAQLRQKVCWP*YRRGGRPKPYMISEGRMKMNFPSRLEI**QSWNL*MMTG*VENLWENLEYFPKTTYSFYRSA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Acute Myeloid Leukemia,Head and Neck squamous cell carcinoma,Colon adenocarcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HEAD_AND_NECK,COLON,BLADDER,BLADDER inexact 151935579,151682935,151935579,151682935,151656410,151842350 FALSE,TRUE,FALSE,TRUE,FALSE,FALSE 152060999,152070713,152070713,152070713,152147238,152096826 FALSE,TRUE,TRUE,TRUE,FALSE,FALSE YES,YES,YES,YES,YES,YES In-frame,Out-of-frame,In-frame,Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28840 IQGAP1::FAM174B ENSG00000140575.13::ENSG00000185442.13 LS513 SRR8615392 SRR8652099 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4744 TRUE 1792 IQGAP1 ENSG00000140575.13 protein_coding + + chr15:90388242-90502239:+ chr15:90390873:+ chr15:90931474-91045471:+ chr15:90934105:+ FAM174B ENSG00000185442.13 protein_coding - - chr15:92617448-92809884:- chr15:92656671:- chr15:93160678-93353114:- chr15:93199901:- chr15:90397907,chr15:90397889,chr15:90397906 chr15:92659238,chr15:92659238,chr15:92659239 NA NA chr15:90941139,chr15:90941121,chr15:90941138 chr15:93202468,chr15:93202468,chr15:93202469 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:2.12Mb] 6 36 6 5.54 INCL_NON_REF_SPLICE YES_LDAS 0.1283 GT 1.2867 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28844 TNS3::CDK14 ENSG00000136205.18::ENSG00000058091.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 352 FALSE NA FALSE NA TNS3 ENSG00000136205.18 protein_coding - - chr7:47275154-47582558:- chr7:47415094:- chr7:47314752-47622156:- chr7:47454692:- CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:90863175:+ chr7:90095738-90839905:+ chr7:90492490:+ chr7:47414945,chr7:47414957 chr7:90861085,chr7:90861073 NA NA chr7:47454543,chr7:47454555 chr7:90490400,chr7:90490388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C1_1|35-83|4e-13^PHD|48-74|0.00065^Y_phosphatase|183-245|1.9e-05^PTEN_C2|287-413|2.6e-41 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:42.88Mb] 28 20 28 20 ONLY_REF_SPLICE YES_LDAS 0.5513 GT 1.8892 AG 1.7465 ENST00000705350.1 1-928 ENST00000380050.8 545-1410 chr7|-|[0]47415094-47415206[2]|[1]47424101-47424184[2]|[1]47428312-47428376[0]|[2]47435282-47435404[0]|[2]47437263-47437313[0]|[2]47439487-47439658[2]|[1]47442003-47442055[0]|[2]47481103-47481141[0]|[2]47506907-47506944[1]|[0]47529036-47529147[0]|[2]47537030-47537107[0]<==>chr7|+|[1]90863175-90863269[2]|[0]90899291-90899353[2]|[0]90917601-90917724[0]|[1]90955697-90955817[1]|[2]90984148-90984241[2]|[0]91045897-91045960[0]|[1]91079432-91079480[1]|[2]91112542-91112681[0]|[1]91118065-91118180[2] atgaggctgcgcgccctgacccctgggccaccgggagggttcgcgcgcggaacccggtcgcgccggcgccggcgccagccggaagaattaacctcgagtctgcacgcttttaagaacaaggcctttaaaaaatccaaagtgtgtggagtttgcaaacaaattattgacggtcaaggtatttcatgccgagcctgcaagtattcctgccacaagaaatgtgaagccaaggtggtgattccctgcggtgtgcaagtccgactggaacaggctccagggagttccacgctgtccagttctctctgccgtgataaacctctgcggcccgtcatcctgagtcccaccatggaggagggccatgggctggacctcacttacatcacggagcgcatcatcgctgtgtccttccctgccggctgctctgaggagtcctacctgcacaacctacaggaggtcacgcgcatgctcaagtccaagcacggggacaactacctggtattaaacctttcagaaaagagatatgaccttacgaagcttaacccaaagatcatggatgtgggctggccagagctccacgcaccgcccctggataagatgtgtaccatatgcaaggcgcaggagtcctggctgaacagcaacctccagcatgtggtcgtcattcactgcaggggcgggaaaggacgcataggagtggtcatatcatcctacatgcatttcaccaacgtctcagccagcgccgaccaggcccttgacaggtttgcaatgaagaagttttatgatgacaaagtttcagctttaatgcagccttcccaaaaacggtatgttcagttcctcagtgggctcctgtccggatcggtgaaaatgaatgcctctcccctgttcctgcattttgtcatcctccacggcacccccaacttcgacacaggtggagCTTCTCTTTTAAAAGGACTAAAACATGCTAACATAGTGCTACTTCATGACATCATCCATACCAAGGAGACGCTGACACTTGTGTTTGAATATGTGCACACTGATTTATGTCAGTACATGGACAAGCACCCTGGGGGGCTGCATCCAGATAATGTGAAGTTGTTTTTATTTCAGTTGCTGCGAGGTCTGTCTTACATCCACCAGCGTTATATTTTGCACAGAGACCTGAAACCACAGAACCTTCTGATCAGTGACACGGGGGAGTTAAAGCTGGCAGATTTCGGTCTTGCAAGAGCAAAATCCGTCCCTAGCCACACATACTCCAACGAAGTGGTTACCTTGTGGTACAGACCTCCAGATGTCCTTCTAGGCTCAACAGAATATTCCACCTGCCTTGACATGTGGGGAGTAGGTTGCATCTTTGTTGAAATGATCCAAGGAGTTGCTGCTTTTCCAGGAATGAAAGACATTCAGGATCAACTTGAACGAATATTTCTGGTTCTTGGAACACCAAATGAGGACACATGGCCTGGAGTTCATTCTTTACCACATTTTAAGCCAGAACGCTTTACCCTGTACAGCTCTAAAAACCTTAGACAAGCATGGAATAAGCTCAGCTATGTGAACCATGCAGAGGACCTGGCCTCCAAGCTCCTACAATGTTCCCCAAAGAACAGACTGTCGGCACAGGCTGCCTTGAGCCACGAGTATTTTAGTGACCTGCCGCCACGGCTATGGGAACTCACCGACATGTCTTCTATTTTTACTGTCCCAAATGTGAGATTGCAACCAGAAGCTGGAGAAAGCATGCGGGCCTTTGGGAAAAACAATAGTTATGGCAAAAGTCTATCAAACAGCAAGCACTGA MRLRALTPGPPGGFARGTRSRRRRRQPEELTSSLHAFKNKAFKKSKVCGVCKQIIDGQGISCRACKYSCHKKCEAKVVIPCGVQVRLEQAPGSSTLSSSLCRDKPLRPVILSPTMEEGHGLDLTYITERIIAVSFPAGCSEESYLHNLQEVTRMLKSKHGDNYLVLNLSEKRYDLTKLNPKIMDVGWPELHAPPLDKMCTICKAQESWLNSNLQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKVSALMQPSQKRYVQFLSGLLSGSVKMNASPLFLHFVILHGTPNFDTGGASLLKGLKHANIVLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPDNVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSSKNLRQAWNKLSYVNHAEDLASKLLQCSPKNRLSAQAALSHEYFSDLPPRLWELTDMSSIFTVPNVRLQPEAGESMRAFGKNNSYGKSLSNSKH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28845 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 354 TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260050:+ chr16:69221050-69342955:+ chr16:69293953:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["NFAT5:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.26Mb] 16 9 16 3.89 ONLY_REF_SPLICE YES_LDAS 0.2285 GT 1.8295 AG 1.8892 ENST00000393742.7 1-73 ENST00000336278.9 795-1623 chr16|+|[0]69566302-69566374[0]<==>chr16|+|[2]69260050-69260260[2]|[0]69270143-69270285[1]|[2]69284048-69284244[0]|[1]69299590-69299774[2]|[0]69300832-69300924[2] atgccctcggacttcatctcattgctcagcgcggacctagacctggaatcgcccaagtccctctactcgcgagATTGATAGAGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCATGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTCAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATGATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCACTCGTATGGGACTGCTTGTATGA MPSDFISLLSADLDLESPKSLYSRD**SYILLIAGTR*SYAAKIQPQHTPGS*LSTPT*WLSSHRCWLNSTPCLGQPVQQEAVKR*SILPGWQNRQN*MVEDSNGDLSSWL*LRRICCSMTVCRGQEMPGRHHATATHLLPPGWFILAPDVDPPPLDLTLHLLPGQALDRALRCISSGWRHIGICHPGPGYLFRVAMLLLS*SRKSL*AAC*MAKR*GLLFTMKMGSPSQGKMEAPAAYCTATPLKG*RCLLMMASEIYTWILVVPREN*PWTCTLVRSRLYLCCTRFYRPKSLVWDCLY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28846 NFAT5::SNTB2 ENSG00000102908.23::ENSG00000168807.17 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 353 TRUE 680 TRUE 245 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ SNTB2 ENSG00000168807.17 protein_coding + + chr16:69187147-69309052:+ chr16:69260050:+ chr16:69221050-69342955:+ chr16:69293953:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["NFAT5:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.26Mb] 14 16 14 12.11 ONLY_REF_SPLICE YES_LDAS 0.2999 GT 1.9329 AG 1.8892 ENST00000349945.7 1-127 ENST00000336278.9 795-1623 chr16|+|[0]69566302-69566374[0]|[1]69568495-69568548[0]<==>chr16|+|[2]69260050-69260260[2]|[0]69270143-69270285[1]|[2]69284048-69284244[0]|[1]69299590-69299774[2]|[0]69300832-69300924[2] atgccctcggacttcatctcattgctcagcgcggacctagacctggaatcgcccaagtccctctactcgcgagattctctgaagttacacccatcacagaattttcatagagctggactattggaagATTGATAGAGCTACATTCTCCTGATAGCAGGAACACGTTGATCCTACGCTGCAAAGATACAGCCACAGCACACTCCTGGTTCGTAGCTATCCACACCAACATAATGGCTCTCCTCCCACAGGTGTTGGCTGAACTCAACGCCATGCTTGGGGCAACCAGTACAGCAGGAGGCAGTAAAGAGGTGAAGCATATTGCCTGGCTGGCAGAACAGGCAAAACTAGATGGTGGAAGACAGCAATGGAGACCTGTCCTCATGGCTGTGACTGAGAAGGATTTGCTGCTCTATGACTGTATGCCGTGGACAAGAGATGCCTGGGCGTCACCATGCCACAGCTACCCACTTGTTGCCACCAGGTTGGTTCATTCTGGCTCCGGATGTCGATCCCCCTCCCTTGGATCTGACCTTACATTTGCTACCAGGACAGGCTCTCGACAGGGCATTGAGATGCATCTCTTCAGGGTGGAGACACATCGGGATCTGTCATCCTGGACCAGGATACTTGTTCAGGGTTGCCATGCTGCTGCTGAGCTGATCAAGGAAGTCTCTCTAGGCTGCATGTTAAATGGCCAAGAGGTGAGGCTTACTATTCACTATGAAAATGGGTTCACCATCTCAAGGGAAAATGGAGGCTCCAGCAGCATATTGTACCGCTACCCCTTTGAAAGGCTGAAGATGTCTGCTGATGATGGCATCCGAAATCTATACTTGGATTTTGGTGGTCCCGAGGGAGAACTGACCATGGACCTGCACTCTTGTCCGAAGCCGATTGTATTTGTGTTGCACACGTTTTTATCGGCCAAAGTCACTCGTATGGGACTGCTTGTATGA MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLED**SYILLIAGTR*SYAAKIQPQHTPGS*LSTPT*WLSSHRCWLNSTPCLGQPVQQEAVKR*SILPGWQNRQN*MVEDSNGDLSSWL*LRRICCSMTVCRGQEMPGRHHATATHLLPPGWFILAPDVDPPPLDLTLHLLPGQALDRALRCISSGWRHIGICHPGPGYLFRVAMLLLS*SRKSL*AAC*MAKR*GLLFTMKMGSPSQGKMEAPAAYCTATPLKG*RCLLMMASEIYTWILVVPREN*PWTCTLVRSRLYLCCTRFYRPKSLVWDCLY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28849 ZNF148::SNX4 ENSG00000163848.21::ENSG00000114520.11 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 355 FALSE NA FALSE NA ZNF148 ENSG00000163848.21 protein_coding - - chr3:125225669-125375325:- chr3:125277726:- chr3:124944513-125094169:- chr3:124996570:- SNX4 ENSG00000114520.11 protein_coding - - chr3:125446650-125520202:- chr3:125489463:- chr3:125165494-125239046:- chr3:125208307:- chr3:125273062,chr3:125273066 chr3:125490996,chr3:125490997 NA NA chr3:124991906,chr3:124991910 chr3:125209840,chr3:125209841 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C2H2_jaz|89-99|0.47^CxC5|145-191|0.007^zf-H2C2_2|169-181|0.042^zf-C2H2_11|170-192|0.00036^zf-C2H2|171-193|5.5e-06^zf-C2H2_4|171-193|1.1e-05^zf-C2H2_jaz|171-190|0.0015^zf-MYST|171-189|0.074^XPA_N|173-184|0.23^Zap1_zf1|176-191|0.001^zf-H2C2_2|185-210|7.3e-12^DNA_RNApol_7kD|198-210|0.47^zf-C2H2|199-221|2.9e-07^zf-C2H2_4|199-221|7.6e-06^zf-C2H2_jaz|199-219|0.0091^zf-C2H2_11|199-220|0.0022^XPA_N|200-216|0.048^CxC5|200-222|0.087^Zap1_zf1|203-217|0.74^zf-H2C2_2|214-238|6e-13^DNA_RNApol_7kD|225-239|0.00074^zf-C2H2_jaz|226-249|0.0037^zf-C2H2|227-249|1.3e-07^zf-C2H2_4|227-249|7.9e-06^zf-C2H2_11|227-245|0.024^CxC5|227-254|0.025^XPA_N|228-242|0.018^zf-MYST|229-247|1.3^Zap1_zf1|230-245|1.9^zf-H2C2_2|241-266|2.6e-10^zf-MYST|253-277|4.1e-05^zf-C2H2|255-278|0.0031^zf-C2H2_4|255-278|0.00087^zf-C2H2_11|255-260|10^zf-H2C2_2|272-281|10 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[71290] 9 11 9 10.69 ONLY_REF_SPLICE YES_LDAS 0.2262 GT 1.8892 AG 1.9899 ENST00000492394.5 1-667 ENST00000251775.9 598-1353 chr3|-|[0]125277726-125277809[1]|[0]125279124-125279247[0]|[2]125288103-125288228[0]|[2]125313308-125313640[0]<==>chr3|-|[2]125447779-125447826[0]|[2]125451305-125451419[2]|[1]125453810-125453955[0]|[2]125457266-125457365[2]|[1]125460771-125460860[2]|[1]125469454-125469519[2]|[1]125476695-125476756[0]|[2]125480247-125480319[2]|[1]125489408-125489463[0] atgaacattgacgacaaactggaaggattgtttcttaaatgtggcggcatagacgaaatgcagtcttccaggacaatggttgtaatgggtggagtgtctggccagtctactgtgtctggagagctacaggattcagtacttcaagatcgaagtatgcctcaccaggagatccttgctgcagatgaagtgttacaagaaagtgaaatgagacaacaggatatgatatcacatgatgaactcatggtccatgaggagacagtgaaaaatgatgaagagcagatggaaacacatgaaagacttcctcaaggactacagtatgcacttaatgtccctataagcgtaaagcaggaaattacttttactgatgtatctgagcaactgatgagagacaaaaaacaaatcagagagccagtagacttacagaaaaagaagaagcggaaacaacgttctcccgcaaaaatccttacaataaatgaggatggatcacttggtttgaaaacccctaaatctcacgtttgtgagcactgcaatgctgcctttagaacgaactatcacttacagagacatgtcttcattcatacaggtgaaaaaccatttcaatgtagtcaatgtgacatgcgtttcatacagaagtacctgcttcagagacatgagaagattcatactgGCAGACTCCAGGTTAAAAGCGCTTAATGCAACATTCAGAGTGAAAAACCCAGACAAGAGATTTACTGACCTTAAGCACTATAGTGATGAACTGCAGTCTGTCATCTCACATCTTCTTCGAGTCAGAGCTAGAGTAGCAGATCGACTCTATGGTGTATATAAAGTACATGGGAATTATGGTCGAGTTTTCAGTGAATGGAGTGCCATAGAAAAAGAAATGGGTGATGGACTGCAGAGTGCTGGTCATCATATGGATGTGTATGCATCTTCTATTGATGATATTTTGGAAGATGAAGAACATTATGCAGATCAGTTAAAAGAGTATCTTTTTTATGCAGAAGCATTGCGGGCTGTGTGCAGGAAACATGAACTTATGCAGTATGACTTGGAGATGGCTGCTCAGGACTTAGCATCCAAGAAGCAGCAGTGTGAGGAACTGGTAACTGGGACTGTGAGAACATTCTCTTTGAAGGGAATGACTACCAAGCTCTTTGGTCAAGAAACTCCAGAGCAGAGAGAAGCCAGAATAAAGGTGCTAGAAGAACAAATAAATGAAGGAGAACAACAGCTAAAGTCTAAAAATCTGGAAGGCAGAGAATTTGTGAAAAACGCATGGGCTGATATTGAACGCTTCAAAGAACAAAAGAACCGAGACTTAAAGGAGGCCCTCATAAGCTATGCAGTCATGCAGATCAGTATGTGCAAAAAGGGAATTCAAGTTTGGACCAATGCTAAGGAATGCTTTAGCAAGATGTAA MNIDDKLEGLFLKCGGIDEMQSSRTMVVMGGVSGQSTVSGELQDSVLQDRSMPHQEILAADEVLQESEMRQQDMISHDELMVHEETVKNDEEQMETHERLPQGLQYALNVPISVKQEITFTDVSEQLMRDKKQIREPVDLQKKKKRKQRSPAKILTINEDGSLGLKTPKSHVCEHCNAAFRTNYHLQRHVFIHTGEKPFQCSQCDMRFIQKYLLQRHEKIHTGRLQVKSA*CNIQSEKPRQEIY*P*AL***TAVCHLTSSSSQS*SSRSTLWCI*STWELWSSFQ*MECHRKRNG*WTAECWSSYGCVCIFY**YFGR*RTLCRSVKRVSFLCRSIAGCVQET*TYAV*LGDGCSGLSIQEAAV*GTGNWDCENILFEGNDYQALWSRNSRAERSQNKGARRTNK*RRTTAKV*KSGRQRICEKRMG*Y*TLQRTKEPRLKGGPHKLCSHADQYVQKGNSSLDQC*GML*QDV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma CERVIX no_match 125093946 FALSE 125223588 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28851 FGGY::AGAP1 ENSG00000172456.18::ENSG00000157985.20 LS411N SRR8615393 SRR8652100 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FGGY ENSG00000172456.18 protein_coding + + chr1:59296638-59810647:+ chr1:59378837:+ chr1:59762310-60276319:+ chr1:59844509:+ AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:236036561:+ chr2:236402687-237040437:+ chr2:236945205:+ chr1:59390781,chr1:59390779 chr2:235977972,chr2:235977969 NA NA chr1:59856453,chr1:59856451 chr2:236886616,chr2:236886613 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FGGY_N|11-267|1.4e-28^BcrAD_BadFG|13-38|0.0001^BcrAD_BadFG|115-157|0.093^FGGY_C|289-496|5e-60^BcrAD_BadFG|442-475|0.45 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr2] 6 5 6 4.29 ONLY_REF_SPLICE YES_LDAS 0.1182 GT 1.9329 AG 1.4256 ENST00000634364.1 1-554 ENST00000409538.5 2282-3210 chr1|+|[0]59321550-59321750[2]|[0]59339958-59340069[0]|[1]59346247-59346398[2]|[0]59378749-59378837[1]<==>chr2|+|[1]236036561-236036715[2]|[0]236040751-236040841[0]|[1]236049059-236049281[1]|[2]236120192-236120447[2]|[0]236123919-236124122[2] atgtctggtggagaacagaaaccagagaggtactatgtgggtgtggacgttggaacaggcagtgtccgtgcagctctggtggaccagagtggggtcctgttggcttttgcagaccagccaattaagaattgggagccccagttcaaccaccatgagcagtcctccgaggacatctgggctgcgtgctgtgttgtcacaaagaaagttgtacaagggattgatttaaaccaaattcgaggacttgggtttgatgccacgtgttctctggttgttttggataagcagtttcacccattaccagtcaaccaggaaggggattcccatcgaaacgtcatcatgtggctggaccatcgagcagtcagtcaagttaacaggatcaatgagaccaagcacagtgtcctccagtacgtcgggggggtgatgtctgtggaaatgcaggccccgaaacttctgtggctgaaagagaacttgagagagatttgctgggataaggcgggacatttctttgatctcccggacttcttatcgtggaaggcaacaggtgtcacagcacgAACAAGAAGAAAATTTTGAGTTTATCATTGTGTCCCTCACTGGCCAAACATGGCACTTTGAAGCCACGACGTATGAGGAGCGGGACGCCTGGGTCCAAGCCATCGAGAGCCAGATCCTGGCCAGCCTGCAGTCGTGCGAGAGCAGCAAGAACAAGTCCCGGCTGACGAGCCAGAGCGAGGCCATGGCCCTGCAGTCGATCCGGAACATGCGCGGGAACTCCCACTGTGTGGACTGCGAGACCCAGAATCCCAACTGGGCCAGTTTGAACTTGGGAGCCCTCATGTGCATCGAATGCTCAGGGATCCACCGGAATCTTGGCACCCACCTTTCCCGAGTCCGATCTCTGGACCTGGATGACTGGCCAGTCGAGCTCATCAAGGTGATGTCATCCATCGGGAACGAGCTAGCCAACAGCGTCTGGGAAGAGAGCAGCCAGGGGCGGACGAAACCATCGGTAGACTCCACAAGGGAAGAGAAGGAACGGTGGATCCGTGCCAAGTACGAGCAGAAGCTCTTCCTGGCCCCGCTGCCCTGCACGGAGCTGTCCCTGGGCCAGCACCTGCTGCGGGCCACCGCCGACGAGGACCTGCGGACGGCCATCCTGCTGCTGGCACACGGCTCCCGGGACGAGGTGAACGAGACCTGCGGGGAGGGAGACGGCCGCACGGCGCTGCATCTGGCCTGCCGCAAGGGGAATGTGGTCCTGGCGCAGCTCCTGATCTGGTACGGAGTGGACGTCACGGCCCGAGATGCCCACGGGAACACAGCTCTGGCCTACGCCCGGCAGGCCTCCAGCCAGGAGTGCATCGACGTGCTGCTGCAGTACGGCTGCCCCGACGAGCGCTTCGTGCTCATGGCCACCCCTAACCTGTCCAGGAGAAACAATAACCGGAACAACAGCAGTGGGAGGGTGCCCACCATCATCTGA MSGGEQKPERYYVGVDVGTGSVRAALVDQSGVLLAFADQPIKNWEPQFNHHEQSSEDIWAACCVVTKKVVQGIDLNQIRGLGFDATCSLVVLDKQFHPLPVNQEGDSHRNVIMWLDHRAVSQVNRINETKHSVLQYVGGVMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARTRRKF*VYHCVPHWPNMAL*SHDV*GAGRLGPSHREPDPGQPAVVREQQEQVPADEPERGHGPAVDPEHARELPLCGLRDPESQLGQFELGSPHVHRMLRDPPESWHPPFPSPISGPG*LASRAHQGDVIHRERASQQRLGREQPGADETIGRLHKGREGTVDPCQVRAEALPGPAALHGAVPGPAPAAGHRRRGPADGHPAAGTRLPGRGERDLRGGRRPHGAASGLPQGECGPGAAPDLVRSGRHGPRCPREHSSGLRPAGLQPGVHRRAAAVRLPRRALRAHGHP*PVQEKQ*PEQQQWEGAHHHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28852 SASS6::LRRC7 ENSG00000156876.10::ENSG00000033122.21 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4746 TRUE 1793 SASS6 ENSG00000156876.10 protein_coding - - chr1:100083563-100132955:- chr1:100132750:- chr1:100549119-100598511:- chr1:100598306:- LRRC7 ENSG00000033122.21 protein_coding + + chr1:69567922-70151945:+ chr1:70107752:+ chr1:70033605-70617628:+ chr1:70573435:+ chr1:100132690,chr1:100132698 chr1:70105951,chr1:70105942 NA NA chr1:100598246,chr1:100598254 chr1:70571634,chr1:70571625 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SAS-6_N-PARTIAL|45-65~|2.5e-29 PDZ-PARTIAL|~3-55|3.9e-18^PDZ_6|3-56|3.9e-12^PDZ_2-PARTIAL|~3-58|2.5e-10 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:29.93Mb] 110 35 110 30.75 ONLY_REF_SPLICE YES_LDAS 1.6986 GT 1.6895 AG 1.7232 ENST00000287482.6 1-65 ENST00000588515.5 3-185 chr1|-|[1]100132750-100132814[0]<==>chr1|+|[0]70107752-70107826[2]|[0]70121780-70121870[0]|[1]70128538-70128554[2] atgagccaagtgctgttccaccaactagtcccgttgcaggtgaaatgcaaagactgtgaggagagGGTATCTTTGTTACTAGGGTTCAGCCTGATGGGCCAGCATCAAACCTACTGCAGCCTGGTGATAAGATCCTTCAGGCAAATGGACACAGTTTTGTACATATGGAACATGAAAAAGCTGTATTACTACTGAAGAGTTTCCAGAACACAGTAGACCTAGTTATTCAACGAAAACATTTACTGTAG MSQVLFHQLVPLQVKCKDCEERVSLLLGFSLMGQHQTYCSLVIRSFRQMDTVLYIWNMKKLYYY*RVSRTQ*T*LFNENIYC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28853 MED13L::RFLNA ENSG00000123066.9::ENSG00000178882.15 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MED13L ENSG00000123066.9 protein_coding - - chr12:115957905-116277693:- chr12:116096669:- chr12:116395710-116715498:- chr12:116534474:- RFLNA ENSG00000178882.15 protein_coding + + chr12:123973241-124316024:+ chr12:124149595:+ chr12:124457788-124800570:+ chr12:124634141:+ chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848,chr12:116084848 chr12:124053138,chr12:124053137,chr12:124053135,chr12:124053112,chr12:124053178,chr12:124053162,chr12:124053161,chr12:124053157,chr12:124053156,chr12:124053147 NA NA chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653,chr12:116522653 chr12:124537685,chr12:124537684,chr12:124537682,chr12:124537659,chr12:124537725,chr12:124537709,chr12:124537708,chr12:124537704,chr12:124537703,chr12:124537694 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 98 24 98 24 ONLY_REF_SPLICE YES_LDAS 1.4723 GT 1.7465 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-620 chr12:116148560-116148654:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28859 SRSF11::ENSG00000285530 ENSG00000116754.14::ENSG00000285530.1 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SRSF11 ENSG00000116754.14 protein_coding + + chr1:70205682-70253052:+ chr1:70221839:+ chr1:70671365-70718735:+ chr1:70687522:+ ENSG00000285530 ENSG00000285530.1 lncRNA + + chr1:100220488-100253414:+ chr1:100249464:+ chr1:100686044-100718970:+ chr1:100715020:+ chr1:70228163,chr1:70228163,chr1:70228159 chr1:100231194,chr1:100231198,chr1:100231187 NA NA chr1:70693846,chr1:70693846,chr1:70693842 chr1:100696750,chr1:100696754,chr1:100696743 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 23 1 23 1 ONLY_REF_SPLICE YES_LDAS 0.2897 GT 1.6729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28861 SASS6::LRRC7 ENSG00000156876.10::ENSG00000033122.21 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4746 TRUE 1793 SASS6 ENSG00000156876.10 protein_coding - - chr1:100083563-100132955:- chr1:100132750:- chr1:100549119-100598511:- chr1:100598306:- LRRC7 ENSG00000033122.21 protein_coding + + chr1:69567922-70151945:+ chr1:70107769:+ chr1:70033605-70617628:+ chr1:70573452:+ chr1:100132690,chr1:100132698 chr1:70105951,chr1:70105942 NA NA chr1:100598246,chr1:100598254 chr1:70571634,chr1:70571625 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SAS-6_N-PARTIAL|45-65~|2.5e-29 PDZ-PARTIAL|~20-55|3.9e-18^PDZ_6-PARTIAL|~20-56|3.9e-12^PDZ_2-PARTIAL|~20-58|2.5e-10 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:29.93Mb] 19 30 19 4.25 INCL_NON_REF_SPLICE YES_LDAS 0.2806 GT 1.6895 AG 1.8892 ENST00000287482.6 1-65 ENST00000588515.5 20-185 chr1|-|[1]100132750-100132814[0]<==>chr1|+|[2]70107769-70107826[2]|[0]70121780-70121870[0]|[1]70128538-70128554[2] atgagccaagtgctgttccaccaactagtcccgttgcaggtgaaatgcaaagactgtgaggagagGGTTCAGCCTGATGGGCCAGCATCAAACCTACTGCAGCCTGGTGATAAGATCCTTCAGGCAAATGGACACAGTTTTGTACATATGGAACATGAAAAAGCTGTATTACTACTGAAGAGTTTCCAGAACACAGTAGACCTAGTTATTCAACGAAAACATTTACTGTAG MSQVLFHQLVPLQVKCKDCEERVQPDGPASNLLQPGDKILQANGHSFVHMEHEKAVLLLKSFQNTVDLVIQRKHLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28862 SLX9::ADARB1 ENSG00000160256.14::ENSG00000197381.18 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44943837:+ chr21:46359940-46396888:+ chr21:46363752:+ ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr21:44952438,chr21:44952436 chr21:45083145,chr21:45083140 NA NA chr21:46372353,chr21:46372351 chr21:46503060,chr21:46503055 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 3 12 2.14 ONLY_REF_SPLICE YES_LDAS 0.1706 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28866 BAIAP2::CHMP6 ENSG00000175866.16::ENSG00000176108.9 LU99 SRR8615394 SRR8652106 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 358 FALSE NA FALSE NA BAIAP2 ENSG00000175866.16 protein_coding + + chr17:81035122-81117434:+ chr17:81057967:+ chr17:79008922-79091234:+ chr17:79031767:+ CHMP6 ENSG00000176108.9 protein_coding + + chr17:80991598-81009517:+ chr17:80997261:+ chr17:78965398-78983317:+ chr17:78971061:+ chr17:81082431,chr17:81082428 chr17:80991446,chr17:80991440 NA NA chr17:79056231,chr17:79056228 chr17:78965246,chr17:78965240 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame IMD|52-270|1.2e-105^BAR_3|91-182|6.6e-05^BAR|92-196|1.7e-07^Peptidase_Mx1|108-166|7.8e-05^OmpH|111-141|1.1^DUF4407|118-256|0.0034^OmpH|141-225|0.00099 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.03Mb];LOCAL_REARRANGEMENT:+:[25605] 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.1206 GT 1.9086 AG 1.8892 ENST00000575245.5 1-316 ENST00000572778.5 352-675 chr17|+|[0]81035255-81035308[2]|[0]81036863-81036961[2]|[0]81053668-81053743[0]|[1]81057881-81057967[0]<==>chr17|+|[0]80997261-80997341[2]|[0]80998366-80998608[2] atgtctctgtctcgctcagaggagatgcaccggctcacggaaaatgtctataagagggtggaagagaagtaccagcggaacctttttcctattttttctccttctgcgctgaaaccagaaagcaggaactttcgtggtgagagttggcaggggaccatcatggagcagttcaaccctagcctccggaacttcatcgccatggggaagaattacgagaaggcactggcaggtgtgacgtatgcagccaaaggctactttgacgccctggtgaagatgggggagctggccagcgagagccagggctccaaagaactcgCAAATAGACGAGCTCCTGGCAGGAAGCTTCACTCAGGAGGATGAAGACGCCATCCTGGAGGAGCTGAGCGCAATCACTCAGGAACAAATAGAGCTGCCAGAGGTTCCCTCCGAGCCCCTTCCTGAGAAGATCCCAGGTATTTCCATGTTTGATTCTTTTGAATGGTTGGAATTCGCAGGAGAAAAGTGGATTCTAGAAGGGAACAAGACAGAATGCTCCCAGGCCTTCCTGGGCCGTGGGCAAGCCCTGCTGCCTGGCTGTTTGGCTTGGGGGCGTGCGTGCCTGGCCTTGGGGTTGGGCTTGGGTTTCCCAGGGGTTCGGTAA MSLSRSEEMHRLTENVYKRVEEKYQRNLFPIFSPSALKPESRNFRGESWQGTIMEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELANRRAPGRKLHSGG*RRHPGGAERNHSGTNRAARGSLRAPS*EDPRYFHV*FF*MVGIRRRKVDSRREQDRMLPGLPGPWASPAAWLFGLGACVPGLGVGLGFPRGSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28869 GPHN::PALS1 ENSG00000171723.16::ENSG00000072415.10 LS180 SRR8615398 SRR8652101 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 361 FALSE NA FALSE NA GPHN ENSG00000171723.16 protein_coding + + chr14:66507407-67181803:+ chr14:66681185:+ chr14:66974125-67648520:+ chr14:67147903:+ PALS1 ENSG00000072415.10 protein_coding + + chr14:67240713-67336061:+ chr14:67312527:+ chr14:67707430-67802778:+ chr14:67779244:+ chr14:66717991,chr14:66717991 chr14:67304202,chr14:67304199 NA NA chr14:67184709,chr14:67184709 chr14:67770919,chr14:67770916 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["GPHN:Oncogene"] 17 11 17 11 ONLY_REF_SPLICE YES_LDAS 0.3646 GT 1.8062 AG 1.8892 ENST00000557654.5 1-143 ENST00000678380.1 1042-2028 chr14|+|[0]66508528-66508591[0]|[1]66681107-66681185[1]<==>chr14|+|[0]67312527-67312710[0]|[1]67316832-67316903[0]|[1]67317408-67317479[0]|[1]67320230-67320397[0]|[1]67321057-67321259[2]|[0]67323702-67323812[2]|[0]67332780-67332956[2] atggcgaccgagggaatgatccttactaaccacgaccatcaaatccgtgtcggagtccttacagtgagtgatagttgcttcaggaatcttgcagaagaccgcagtgggataaatctcaaagatctcgtacaagatccttctttATCCATGTAAAAGCTCATTTTGACTATGACCCCTCAGATGACCCTTATGTTCCATGTCGAGAGTTAGGTCTGTCTTTTCAAAAAGGTGATATACTTCATGTGATCAGTCAAGAAGATCCAAACTGGTGGCAGGCCTACAGGGAAGGGGACGAAGATAATCAACCTCTAGCCGGGCTTGTTCCAGGGAAAAGCTTTCAGCAGCAAAGGGAAGCCATGAAACAAACCATAGAAGAAGATAAGGAGCCAGAAAAATCAGGAAAACTGTGGTGTGCAAAGAAGAATAAAAAGAAGAGGAAAAAGGTTTTATATAATGCCAATAAAAATGATGATTATGACAACGAGGAGATCTTAACCTATGAGGAAATGTCACTTTATCATCAGCCAGCAAATAGGAAGAGACCTATCATCTTGATTGGTCCACAGAACTGTGGCCAGAATGAATTGCGTCAGAGGCTCATGAACAAAGAAAAGGACCGCTTTGCATCTGCAGTTCCTCATACAACCCGGAGTAGGCGAGACCAAGAAGTAGCCGGTAGAGATTACCACTTTGTTTCGCGGCAAGCATTCGAGGCAGACATAGCAGCTGGAAAGTTCATTGAGCATGGTGAATTTGAGAAGAATTTGTATGGAACTAGCATAGATTCTGTACGGCAAGTGATCAACTCTGGCAAAATATGTCTTTTAAGTCTTCGTACACAGTCATTGAAGACTCTCCGGAATTCAGATTTGAAACCATATATTATCTTCATTGCACCCCCTTCACAAGAAAGACTTCGGGCATTATTGGCCAAAGAAGGCAAGAATCCAAAGCCTGAAGAGTTGAGAGAAATCATTGAGAAGACAAGAGAGATGGAGCAGAACAATGGCCACTACTTTGATACGGCAATTGTGAATTCCGATCTTGATAAAGCCTATCAGGAATTGCTTAGGTTAATTAACAAACTTGATACTGAACCTCAGTGGGTACCATCCACTTGGCTGAGGTGA MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLSM*KLILTMTPQMTLMFHVES*VCLFKKVIYFM*SVKKIQTGGRPTGKGTKIINL*PGLFQGKAFSSKGKP*NKP*KKIRSQKNQENCGVQRRIKRRGKRFYIMPIKMMIMTTRRS*PMRKCHFIISQQIGRDLSS*LVHRTVARMNCVRGS*TKKRTALHLQFLIQPGVGETKK*PVEITTLFRGKHSRQT*QLESSLSMVNLRRICMELA*ILYGK*STLAKYVF*VFVHSH*RLSGIQI*NHILSSLHPLHKKDFGHYWPKKARIQSLKS*EKSLRRQERWSRTMATTLIRQL*IPILIKPIRNCLG*LTNLILNLSGYHPLG*G FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE gephyrin (GPH) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28878 SLC7A6::TANGO6 ENSG00000103064.15::ENSG00000103047.8 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 364 FALSE NA FALSE NA SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68266721:+ chr16:68298419-68335726:+ chr16:68300624:+ TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:68900434:+ chr16:68877434-69119085:+ chr16:68934337:+ chr16:68268414,chr16:68268413,chr16:68268414 chr16:68897018,chr16:68897014,chr16:68897016 NA NA chr16:68302317,chr16:68302316,chr16:68302317 chr16:68930921,chr16:68930917,chr16:68930919 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.54Mb] 351 323 351 323 ONLY_REF_SPLICE YES_LDAS 5.7637 GT 1.9219 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28879 TMEM87B::MERTK ENSG00000153214.11::ENSG00000153208.19 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 365 FALSE NA FALSE NA TMEM87B ENSG00000153214.11 protein_coding + + chr2:112055269-112119318:+ chr2:112086104:+ chr2:112812846-112876895:+ chr2:112843681:+ MERTK ENSG00000153208.19 protein_coding + + chr2:111898607-112029561:+ chr2:111965191:+ chr2:112656184-112787138:+ chr2:112722768:+ chr2:112086841,chr2:112086838 chr2:111963941,chr2:111963935 NA NA chr2:112844418,chr2:112844415 chr2:112721518,chr2:112721512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Lung_7-TM_R|174-458|2.4e-107 fn3-PARTIAL|~230-297|4.8e-06^Ig_3-PARTIAL|~230-238|2.1^ig|249-278|2.4^I-set|270-291|4.1^PK_Tyr_Ser-Thr|413-677|1.9e-94^Pkinase|414-672|2.5e-40^Pkinase_fungal|523-597|6.1e-05 ["MERTK:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_REARRANGEMENT:+:[25662] 133 88 133 88 ONLY_REF_SPLICE YES_LDAS 1.8899 GT 1.9329 AG 1.8295 ENST00000650799.2 1-938 ENST00000409780.5 230-2472 chr2|+|[0]112055592-112055756[2]|[0]112059977-112060037[0]|[1]112064162-112064253[2]|[0]112066936-112067067[2]|[0]112074912-112074962[2]|[0]112077192-112077282[0]|[1]112081057-112081118[2]|[0]112081335-112081518[0]|[1]112086005-112086104[1]<==>chr2|+|[1]111965191-111965277[0]|[1]111968137-111968252[2]|[0]111975289-111975472[0]|[1]111982842-111982993[2]|[0]111994251-111994404[0]|[1]111997323-111997476[1]|[2]112001201-112001286[0]|[1]112003092-112003187[0]|[1]112003904-112003984[0]|[1]112008383-112008475[0]|[1]112009948-112010066[2]|[0]112019413-112019522[1]|[2]112021422-112021581[2]|[0]112022258-112022394[1]|[2]112028351-112028864[2] atggtcgccgcctgccgctcggtagccgggctcctgccacgccgccgccgctgctttcccgcccgggccccgctgctgcgcgtcgccctctgcctcctgtgctggaccccggcggctgtgcgcgcggtccctgagctcgggctctggttagagacagtcaacgacaaatcaggacctttgatatttaggaaaactatgtttaactctacagatatcaagttatctgttaagtcattccattgttctgggcctgtgaagtttaccatagtgtggcatttgaagtatcatacctgtcacaatgagcattctaatctggaagagctgttccaaaaacataaacttagtgttgatgaagacttttgtcattatttgaagaatgacaactgttggacaacaaaaaatgaaaacttagattgcaacagtgattcacaggtgtttccctctttgaataataaagaactaataaatatcagaaatgtttcaaaccaggaaagatcaatggatgttgtagccagaacacaaaaagatgggtttcatatctttattgtttctattaaaacggagaatacagatgcaagctggaatttgaatgtttctctttctatgattgggcctcatggatatatctctgcatcagattggcccctaatgattttttacatggtgatgtgtattgtttatatattatatggcatactctggctgacgtggtctgcctgttattggaaagatatattaagaatccagttctggattgcagctgttatttttttgggaatgcttgaaaaagcagttttttatagtgaataccaaaacatcagcaacactggactgtcaacccaaggcttattgatatttgcggagttgatttctgcgattaagaggacgttggctcgccttctcgtgatcattgtgagcctgggctatggcattgtgaaGCCTGACGGAGATGGCGGTCTTCAGTTGTGAGGCCCACAATGACAAAGGGCTGACCGTGTCCAAGGGAGTGCAGATCAACATCAAAGCAATTCCCTCCCCACCAACTGAAGTCAGCATCCGTAACAGCACTGCACACAGCATTCTGATCTCCTGGGTTCCTGGTTTTGATGGATACTCCCCGTTCAGGAATTGCAGCATTCAGGTCAAGGAAGCTGATCCGCTGAGTAATGGCTCAGTCATGATTTTTAACACCTCTGCCTTACCACATCTGTACCAAATCAAGCAGCTGCAAGCCCTGGCTAATTACAGCATTGGTGTTTCCTGCATGAATGAAATAGGCTGGTCTGCAGTGAGCCCTTGGATTCTAGCCAGCACGACTGAAGGAGCCCCATCAGTAGCACCTTTAAATGTCACTGTGTTTCTGAATGAATCTAGTGATAATGTGGACATCAGATGGATGAAGCCTCCGACTAAGCAGCAGGATGGAGAACTGGTGGGCTACCGGATATCCCACGTGTGGCAGAGTGCAGGGATTTCCAAAGAGCTCTTGGAGGAAGTTGGCCAGAATGGCAGCCGAGCTCGGATCTCTGTTCAAGTCCACAATGCTACGTGCACAGTGAGGATTGCAGCCGTCACCAGAGGGGGAGTTGGGCCCTTCAGTGATCCAGTGAAAATATTTATCCCTGCACACGGTTGGGTAGATTATGCCCCCTCTTCAACTCCGGCGCCTGGCAACGCAGATCCTGTGCTCATCATCTTTGGCTGCTTTTGTGGATTTATTTTGATTGGGTTGATTTTATACATCTCCTTGGCCATCAGAAAAAGAGTCCAGGAGACAAAGTTTGGGAATGCATTCACAGAGGAGGATTCTGAATTAGTGGTGAATTATATAGCAAAGAAATCCTTCTGTCGGCGAGCCATTGAACTTACCTTACATAGCTTGGGAGTCAGTGAGGAACTACAAAATAAACTAGAAGATGTTGTGATTGACAGGAATCTTCTAATTCTTGGAAAAATTCTGGGTGAAGGAGAGTTTGGGTCTGTAATGGAAGGAAATCTTAAGCAGGAAGATGGGACCTCTCTGAAAGTGGCAGTGAAGACCATGAAGTTGGACAACTCTTCACAGCGGGAGATCGAGGAGTTTCTCAGTGAGGCAGCGTGCATGAAAGACTTCAGCCACCCAAATGTCATTCGACTTCTAGGTGTGTGTATAGAAATGAGCTCTCAAGGCATCCCAAAGCCCATGGTAATTTTACCCTTCATGAAATACGGGGACCTGCATACTTACTTACTTTATTCCCGATTGGAGACAGGACCAAAGCATATTCCTCTGCAGACACTATTGAAGTTCATGGTGGATATTGCCCTGGGAATGGAGTATCTGAGCAACAGGAATTTTCTTCATCGAGATTTAGCTGCTCGAAACTGCATGTTGCGAGATGACATGACTGTCTGTGTTGCGGACTTCGGCCTCTCTAAGAAGATTTACAGTGGCGATTATTACCGCCAAGGCCGCATTGCTAAGATGCCTGTTAAATGGATCGCCATAGAAAGTCTTGCAGACCGAGTCTACACAAGTAAAAGTGATGTGTGGGCATTTGGCGTGACCATGTGGGAAATAGCTACGCGGGGAATGACTCCCTATCCTGGGGTCCAGAACCATGAGATGTATGACTATCTTCTCCATGGCCACAGGTTGAAGCAGCCCGAAGACTGCCTGGATGAACTGTATGAAATAATGTACTCTTGCTGGAGAACCGATCCCTTAGACCGCCCCACCTTTTCAGTATTGAGGCTGCAGCTAGAAAAACTCTTAGAAAGTTTGCCTGACGTTCGGAACCAAGCAGACGTTATTTACGTCAATACACAGTTGCTGGAGAGCTCTGAGGGCCTGGCCCAGGGCTCCACCCTTGCTCCACTGGACTTGAACATCGACCCTGACTCTATAATTGCCTCCTGCACTCCCCGCGCTGCCATCAGTGTGGTCACAGCAGAAGTTCATGACAGCAAACCTCATGAAGGACGGTACATCCTGAATGGGGGCAGTGAGGAATGGGAAGATCTGACTTCTGCCCCCTCTGCTGCAGTCACAGCTGAAAAGAACAGTGTTTTACCGGGGGAGAGACTTGTTAGGAATGGGGTCTCCTGGTCCCATTCGAGCATGCTGCCCTTGGGAAGCTCATTGCCCGATGAACTTTTGTTTGCTGACGACTCCTCAGAAGGCTCAGAAGTCCTGATGTGA MVAACRSVAGLLPRRRRCFPARAPLLRVALCLLCWTPAAVRAVPELGLWLETVNDKSGPLIFRKTMFNSTDIKLSVKSFHCSGPVKFTIVWHLKYHTCHNEHSNLEELFQKHKLSVDEDFCHYLKNDNCWTTKNENLDCNSDSQVFPSLNNKELINIRNVSNQERSMDVVARTQKDGFHIFIVSIKTENTDASWNLNVSLSMIGPHGYISASDWPLMIFYMVMCIVYILYGILWLTWSACYWKDILRIQFWIAAVIFLGMLEKAVFYSEYQNISNTGLSTQGLLIFAELISAIKRTLARLLVIIVSLGYGIVKPDGDGGLQL*GPQ*QRADRVQGSADQHQSNSLPTN*SQHP*QHCTQHSDLLGSWF*WILPVQELQHSGQGS*SAE*WLSHDF*HLCLTTSVPNQAAASPG*LQHWCFLHE*NRLVCSEPLDSSQHD*RSPISSTFKCHCVSE*I***CGHQMDEASD*AAGWRTGGLPDIPRVAECRDFQRALGGSWPEWQPSSDLCSSPQCYVHSEDCSRHQRGSWALQ*SSENIYPCTRLGRLCPLFNSGAWQRRSCAHHLWLLLWIYFDWVDFIHLLGHQKKSPGDKVWECIHRGGF*ISGELYSKEILLSASH*TYLT*LGSQ*GTTK*TRRCCD*QESSNSWKNSG*RRVWVCNGRKS*AGRWDLSESGSEDHEVGQLFTAGDRGVSQ*GSVHERLQPPKCHSTSRCVYRNELSRHPKAHGNFTLHEIRGPAYLLTLFPIGDRTKAYSSADTIEVHGGYCPGNGVSEQQEFSSSRFSCSKLHVAR*HDCLCCGLRPL*EDLQWRLLPPRPHC*DAC*MDRHRKSCRPSLHK*K*CVGIWRDHVGNSYAGNDSLSWGPEP*DV*LSSPWPQVEAARRLPG*TV*NNVLLLENRSLRPPHLFSIEAAARKTLRKFA*RSEPSRRYLRQYTVAGEL*GPGPGLHPCSTGLEHRP*LYNCLLHSPRCHQCGHSRSS*QQTS*RTVHPEWGQ*GMGRSDFCPLCCSHS*KEQCFTGGETC*EWGLLVPFEHAALGKLIAR*TFVC*RLLRRLRSPDV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase Mer TK Axl Q12866 TRUE Lung,Adrenal,Stomach,Breast,Ovary,Uterus_cervix,Bladder exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Adrenocortical carcinoma,Bladder Urothelial Carcinoma LUNG,LUNG,BREAST,BREAST,CERVIX,ADRENAL_GLAND,BLADDER no_match 112813333,112813333,112813333,112813333,112813333,112817614,112834859|112824644 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE 112751828,112751828,112751828,112785928,112751828,112785928,112765960|112765960 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE,FALSE|FALSE YES,YES,YES,YES,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28880 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 366 TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105470688:- chr7:105080108-105162718:- chr7:105111135:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105306571:- chr7:104751151-105039755:- chr7:104947018:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TruD|114-145|6.2e-07^R3H|200-234|6e-06^TruD|252-642|6.7e-74 none ["SRPK2:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.04Mb];NEIGHBORS[40353] 14 12 14 9.62 ONLY_REF_SPLICE YES_LDAS 0.202 GT 1.9219 AG 1.9656 ENST00000469408.6 1-1398 ENST00000465112.5 72-207 chr7|-|[2]105470688-105470848[1]|[0]105472132-105472193[2]|[1]105481052-105481177[2]|[1]105482312-105482440[2]|[1]105491540-105491617[2]|[1]105495142-105495253[1]|[0]105502420-105502564[0]|[2]105505955-105506056[0]|[2]105506189-105506273[2]|[1]105508115-105508512[0]<==>chr7|-|[2]105306436-105306571[2] atggagatgacagaaatgactggtgtgtcgctgaaacgtggggcactggttgtcgaagataatgacagtggagtcccagttgaagagacaaaaaaacagaagctgtcggaatgcagtctaaccaaaggtcaagatgggctacagaatgactttctgtccatcagtgaagacgtgcctcggcctcctgacactgtcagtactgggaaaggtggaaagaattctgaggctcagttggaagatgaggaagaagaggaggaagatggactttcagaggagtgcgaggaggaggaatcagagagttttgcagacatgatgaagcatggactcactgaggctgacgtaggcatcaccaagtttgtgagttctcatcaagggttctcgggaatcttaaaagaaagatactccgacttcgttgttcatgaaataggaaaagatggacggatcagccatttgaatgacttgtccattccagtggatgaggaggacccttcagaagacatatttacagttttgacagctgaagaaaagcagcgattggaagagctccagctgttcaaaaataaggaaaccagtgttgccattgaggttatcgaggacaccaaagagaaaagaaccatcatccatcaggctatcaaatctctgtttccaggattagagacaaaaacagaggatagggaggggaagaaatacattgtagcctaccacgcagctgggaaaaaggctttggcaaatccaagaaaacattcttggccaaaatctaggggaagttactgccacttcgtactatataaggaaaacaaagacaccatggatgctattaatgtactctccaaatacttaagagtcaagccaaatatattctcctacatgggaaccaaagataaaagggctataacagttcaagaaattgctgttctcaaaataactgcacaaagacttgcccacctgaataagtgcttgatgaactttaagctagggaatttcagctatcaaaaaaacccactgaaattgggagagcttcaaggaaaccacttcactgttgttctcagaaatataacaggaactgatgaccaagtacagcaagctatgaactctctcaaggagattggatttattaactactatggaatgcaaagatttggaaccacagctgtccctacgtatcaggttggaagagctatactacaaaattcctggacagaagtcatggatttaatattgaaaccccgctctggagctgaaaagggctacttggttaaatgcagagaagaatgggcaaagaccaaagacccaactgctgccctcagaaaactacctgtcaaaaggtgtgtggaagggcagctgcttcgaggactttcaaaatatggaatgaagaatatagtctctgcatttggcataGTGGAGTACATCCTGCTGCTTCAAGGGTAGAAGACTCCTCACTGCTTTCCTTCATGAGATTTCAAAGGAAGTGTTGGTTTTTTTTTTGCCTGGTTCAAGTATTGACCAAGAAGATGACAGTGATGTGGTCTCTTAG MEMTEMTGVSLKRGALVVEDNDSGVPVEETKKQKLSECSLTKGQDGLQNDFLSISEDVPRPPDTVSTGKGGKNSEAQLEDEEEEEEDGLSEECEEEESESFADMMKHGLTEADVGITKFVSSHQGFSGILKERYSDFVVHEIGKDGRISHLNDLSIPVDEEDPSEDIFTVLTAEEKQRLEELQLFKNKETSVAIEVIEDTKEKRTIIHQAIKSLFPGLETKTEDREGKKYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIVEYILLLQG*KTPHCFPS*DFKGSVGFFFAWFKY*PRR*Q*CGLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28882 PUS7::SRPK2 ENSG00000091127.14::ENSG00000135250.17 AGS SRR8615404 SRR8639169 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 367 TRUE 707 TRUE 257 PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105470761:- chr7:105080108-105162718:- chr7:105111208:- SRPK2 ENSG00000135250.17 protein_coding - - chr7:105110704-105399308:- chr7:105203785:- chr7:104751151-105039755:- chr7:104844232:- chr7:105469813,chr7:105469814,chr7:105470144,chr7:105470158 chr7:105337537,chr7:105337535,chr7:105337579,chr7:105337581 NA NA chr7:105110260,chr7:105110261,chr7:105110591,chr7:105110605 chr7:104977984,chr7:104977982,chr7:104978026,chr7:104978028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TruD|114-145|6.2e-07^R3H|200-234|6e-06^TruD|252-642|6.7e-74 Pkinase|81-223|2.1e-25^PK_Tyr_Ser-Thr|83-223|6.9e-13^HNOB|153-217|4.7e-05^Pkinase_fungal|193-223|7.5e-06^DUF5685|261-301|0.00033^Pkinase|270-302|5^Pkinase|523-717|2.4e-20^PK_Tyr_Ser-Thr|523-580|0.00018 ["SRPK2:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.04Mb];NEIGHBORS[40353] 11 3 11 0.81 ONLY_REF_SPLICE YES_LDAS 0.101 GT 1.8892 AG 1.8062 ENST00000469408.6 1-1325 ENST00000460391.6 39-2160 chr7|-|[1]105470761-105470848[1]|[0]105472132-105472193[2]|[1]105481052-105481177[2]|[1]105482312-105482440[2]|[1]105491540-105491617[2]|[1]105495142-105495253[1]|[0]105502420-105502564[0]|[2]105505955-105506056[0]|[2]105506189-105506273[2]|[1]105508115-105508512[0]<==>chr7|-|[2]105117838-105118022[1]|[0]105125782-105125874[1]|[0]105126248-105126340[1]|[0]105126993-105127062[0]|[2]105132791-105132898[0]|[2]105133004-105133104[1]|[0]105142008-105142490[1]|[0]105143084-105143330[0]|[2]105145283-105145308[1]|[0]105146493-105146658[0]|[2]105160507-105160613[1]|[0]105167377-105167464[0]|[2]105168008-105168095[2]|[1]105169157-105169265[1]|[0]105203628-105203785[2] atggagatgacagaaatgactggtgtgtcgctgaaacgtggggcactggttgtcgaagataatgacagtggagtcccagttgaagagacaaaaaaacagaagctgtcggaatgcagtctaaccaaaggtcaagatgggctacagaatgactttctgtccatcagtgaagacgtgcctcggcctcctgacactgtcagtactgggaaaggtggaaagaattctgaggctcagttggaagatgaggaagaagaggaggaagatggactttcagaggagtgcgaggaggaggaatcagagagttttgcagacatgatgaagcatggactcactgaggctgacgtaggcatcaccaagtttgtgagttctcatcaagggttctcgggaatcttaaaagaaagatactccgacttcgttgttcatgaaataggaaaagatggacggatcagccatttgaatgacttgtccattccagtggatgaggaggacccttcagaagacatatttacagttttgacagctgaagaaaagcagcgattggaagagctccagctgttcaaaaataaggaaaccagtgttgccattgaggttatcgaggacaccaaagagaaaagaaccatcatccatcaggctatcaaatctctgtttccaggattagagacaaaaacagaggatagggaggggaagaaatacattgtagcctaccacgcagctgggaaaaaggctttggcaaatccaagaaaacattcttggccaaaatctaggggaagttactgccacttcgtactatataaggaaaacaaagacaccatggatgctattaatgtactctccaaatacttaagagtcaagccaaatatattctcctacatgggaaccaaagataaaagggctataacagttcaagaaattgctgttctcaaaataactgcacaaagacttgcccacctgaataagtgcttgatgaactttaagctagggaatttcagctatcaaaaaaacccactgaaattgggagagcttcaaggaaaccacttcactgttgttctcagaaatataacaggaactgatgaccaagtacagcaagctatgaactctctcaaggagattggatttattaactactatggaatgcaaagatttggaaccacagctgtccctacgtatcaggttggaagagctatactacaaaattcctggacagaagtcatggatttaatattgaaaccccgctctggagctgaaaagggctacttggttaaatgcagagaagaatgggcaaagaccaaagacccaactgctgccctcagaaaactacctgtcaaaagGCCGGAGCCTCAACAGAAAGCTCCTTTAGTTCCTCCTCCTCCACCGCCACCACCACCACCACCGCCACCTTTGCCAGACCCCACACCCCCGGAGCCAGAGGAGGAGATCCTGGGATCAGATGATGAGGAGCAAGAGGACCCTGCGGACTACTGCAAAGGTGGATATCATCCAGTGAAAATTGGAGACCTCTTCAATGGCCGGTATCATGTTATTAGAAAGCTTGGATGGGGGCACTTCTCTACTGTCTGGCTGTGCTGGGATATGCAGGGGAAAAGATTTGTTGCAATGAAAGTTGTAAAAAGTGCCCAGCATTATACGGAGACAGCCTTGGATGAAATAAAATTGCTCAAATGTGTTCGAGAAAGTGATCCCAGTGACCCAAACAAAGACATGGTGGTCCAGCTCATTGACGACTTCAAGATTTCAGGCATGAATGGGATACATGTCTGCATGGTCTTCGAAGTACTTGGCCACCATCTCCTCAAGTGGATCATCAAATCCAACTATCAAGGCCTCCCAGTACGTTGTGTGAAGAGTATCATTCGACAGGTCCTTCAAGGGTTAGATTACTTACACAGTAAGTGCAAGATCATTCATACTGACATAAAGCCGGAAAATATCTTGATGTGTGTGGATGATGCATATGTGAGAAGAATGGCAGCTGAGGCCACTGAGTGGCAGAAAGCAGGTGCTCCTCCTCCTTCAGGGTCTGCAGTGAGTACGGCTCCACAGCAGAAACCTATAGGAAAAATATCTAAAAACAAAAAGAAAAAACTGAAAAAGAAACAGAAGAGGCAGGCTGAGTTATTGGAGAAGCGCCTGCAGGAGATAGAAGAATTGGAGCGAGAAGCTGAAAGGAAAATAATAGAAGAAAACATCACCTCAGCTGCACCTTCCAATGACCAGGATGGCGAATACTGCCCAGAGGTGAAACTAAAAACAACAGGATTAGAGGAGGCGGCTGAGGCAGAGACTGCAAAGGACAATGGTGAAGCTGAGGACCAGGAAGAGAAAGAAGATGCTGAGAAAGAAAACATTGAAAAAGATGAAGATGATGTAGATCAGGAACTTGCGAACATAGACCCTACGTGGATAGAATCACCTAAAACCAATGGCCATATTGAGAATGGCCCATTCTCACTGGAGCAGCAACTGGACGATGAAGATGATGATGAAGAAGACTGCCCAAATCCTGAGGAATATAATCTTGATGAGCCAAATGCAGAAAGTGATTACACATATAGCAGCTCCTATGAACAATTCAATGGTGAATTGCCAAATGGACGACATAAAATTCCCGAGTCACAGTTCCCAGAGTTTTCCACCTCGTTGTTCTCTGGATCCTTAGAACCTGTGGCCTGCGGCTCTGTGCTTTCTGAGGGATCACCACTTACTGAGCAAGAGGAGAGCAGTCCATCCCATGACAGAAGCAGAACGGTTTCAGCCTCCAGTACTGGGGATTTGCCAAAAGCAAAAACCCGGGCAGCTGACTTGTTGGTGAATCCCCTGGATCCGCGGAATGCAGATAAAATTAGAGTAAAAATTGCTGACCTGGGAAATGCTTGTTGGGTGCATAAACACTTCACGGAAGACATCCAGACGCGTCAGTACCGCTCCATAGAGGTTTTAATAGGAGCGGGGTACAGCACCCCTGCGGACATCTGGAGCACGGCGTGTATGGCATTTGAGCTGGCAACGGGAGATTATTTGTTTGAACCACATTCTGGGGAAGACTATTCCAGAGACGAAGACCACATAGCCCACATCATAGAGCTGCTAGGCAGTATTCCAAGGCACTTTGCTCTATCTGGAAAATATTCTCGGGAATTCTTCAATCGCAGAGATCACATAGCATTGATCATTGAACTGCTGGGGAAAGTCCCTCGAAAATACGCTATGTTGGGGAAATACTCCAAGGAGTTTTTCACCAGAAAAGGAGAACTGCGACACATCACCAAGCTGAAGCCCTGGAGCCTCTTTGATGTACTTGTGGAAAAGTATGGCTGGCCCCATGAAGATGCTGCACAGTTTACAGATTTCCTGATCCCGATGTTAGAAATGGTTCCAGAAAAACGAGCCTCAGCTGGCGAATGCCTTCGGCATCCTTGGTTGAATTCTTAG MEMTEMTGVSLKRGALVVEDNDSGVPVEETKKQKLSECSLTKGQDGLQNDFLSISEDVPRPPDTVSTGKGGKNSEAQLEDEEEEEEDGLSEECEEEESESFADMMKHGLTEADVGITKFVSSHQGFSGILKERYSDFVVHEIGKDGRISHLNDLSIPVDEEDPSEDIFTVLTAEEKQRLEELQLFKNKETSVAIEVIEDTKEKRTIIHQAIKSLFPGLETKTEDREGKKYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRPEPQQKAPLVPPPPPPPPPPPPPLPDPTPPEPEEEILGSDDEEQEDPADYCKGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQKAGAPPPSGSAVSTAPQQKPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKIIEENITSAAPSNDQDGEYCPEVKLKTTGLEEAAEAETAKDNGEAEDQEEKEDAEKENIEKDEDDVDQELANIDPTWIESPKTNGHIENGPFSLEQQLDDEDDDEEDCPNPEEYNLDEPNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEFSTSLFSGSLEPVACGSVLSEGSPLTEQEESSPSHDRSRTVSASSTGDLPKAKTRAADLLVNPLDPRNADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRDHIALIIELLGKVPRKYAMLGKYSKEFFTRKGELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE SRSF protein kinase 2 CMGC SRPK P78362 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28891 TAF5L::NUP133 ENSG00000135801.11::ENSG00000069248.12 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 368 FALSE NA FALSE NA TAF5L ENSG00000135801.11 protein_coding - - chr1:229593134-229626122:- chr1:229610106:- chr1:229728881-229761869:- chr1:229745853:- NUP133 ENSG00000069248.12 protein_coding - - chr1:229440259-229508341:- chr1:229445002:- chr1:229576006-229644088:- chr1:229580749:- chr1:229605907,chr1:229605907 chr1:229447152,chr1:229447159 NA NA chr1:229741654,chr1:229741654 chr1:229582899,chr1:229582906 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TFIID_NTD2|65-194|2.4e-29^vATP-synt_AC39|88-168|7.2e-05^Ge1_WD40-PARTIAL|157-247~|0.19 none ["NUP133:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.08Mb];NEIGHBORS[84770] 67 61 67 61 ONLY_REF_SPLICE YES_LDAS 1.6271 GT 1.9219 AG 1.9329 ENST00000258281.7 1-247 ENST00000261396.6 3246-3471 chr1|-|[0]229610106-229610210[1]|[0]229614341-229614482[0]<==>chr1|-|[2]229441904-229442040[1]|[0]229444914-229445002[2] atgaaacgagtgcgtaccgagcagattcagatggcagtgtcctgctacctcaaacgccggcagtacgtggactcagatggtcccctgaagcaaggactgcggctgtcacagactgctgaagagatggcggccaatctaacagtgcaatcagaatctggttgtgccaacatagtgtctgcagccccttgccaggcagaaccccagcaatatgaagtacagtttggacgactgcggaattttctcactgCTGGTCCAGTTCTGATGGCAAAGATGATCCAATTGAAGTATCTAAAGACAGTATATTTGTGAAGATCTTACAGAAACTTTTAAAAGATGGCATTCAGCTCAGTGAGTACTTACCGGAGGTGAAAGACCTGCTACAAGCGGATCAGCTTGGAAGCTTAAAGTCCAATCCTTACTTCGAGTTTGTTTTGAAAGCAAATTATGAATATTATGTTCAGGGACAAATATAA MKRVRTEQIQMAVSCYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTAGPVLMAKMIQLKYLKTVYL*RSYRNF*KMAFSSVSTYRR*KTCYKRISLEA*SPILTSSLF*KQIMNIMFRDKY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28892 SNX8::MAD1L1 ENSG00000106266.11::ENSG00000002822.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 371 FALSE NA FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1816228:- chr7:1855429-2272878:- chr7:1855864:- chr7:2287066 chr7:1872633 NA NA chr7:2326701 chr7:1912269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["MAD1L1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.02Mb];NEIGHBORS[18527] 43 4 43 4 ONLY_REF_SPLICE YES_LDAS 0.5974 GT 1.7968 AG 1.5546 ENST00000222990.8 1-94 ENST00000265854.12 1999-2157 chr7|-|[0]2314328-2314421[0]<==>chr7|-|[2]1816070-1816228[0] atgactggccgcgcgatggacccgctgcccgcggctgcagtcggggcggcagctgaggcggaggctgacgaggaggcggatcccccggcgtcagGCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAG MTGRAMDPLPAAAVGAAAEAEADEEADPPASGHQPLGFQDAATGDRVLTHRGRAHRGAPAAPGQHPCLPQLAHPRALQPPDRGV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder,Esophagus BLADDER,OESOPHAGUS no_match 2278100,2314328 FALSE,TRUE 2014642,2014642 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28893 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 374 TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:727210:- chr7:588834-767287:- chr7:766847:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36331079:- chr7:36363761-36429734:- chr7:36370688:- chr7:715434 chr7:36332606 NA NA chr7:755071 chr7:36372215 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 37 2 37 2 ONLY_REF_SPLICE YES_LDAS 0.4957 GT 1.9086 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28895 RFC2::EIF4H ENSG00000049541.11::ENSG00000106682.16 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 373 FALSE NA FALSE NA RFC2 ENSG00000049541.11 protein_coding - - chr7:74231499-74254458:- chr7:74254271:- chr7:73645829-73668788:- chr7:73668601:- EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74194741:+ chr7:73588561-73611452:+ chr7:73609071:+ chr7:74253921,chr7:74253926 chr7:74192105,chr7:74192100 NA NA chr7:73668251,chr7:73668256 chr7:73606435,chr7:73606430 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.03Mb];LOCAL_INVERSION:-:+:[34398] 32 15 32 15 ONLY_REF_SPLICE YES_LDAS 0.5975 GT 1.9656 AG 1.9656 ENST00000463194.1 1-119 ENST00000678438.1 410-687 chr7|-|[1]74254271-74254389[0]<==>chr7|+|[1]74194741-74194878[0]|[1]74195169-74195308[2] gcgagaatggaggtggaggccgtctgtggtggcgcgggcgaggtggaggcccaggactctgaccctgcccctgccttcagcaaggcccccggcagcgccggccactacgaactgccgtgGCTTCAGGGATGACTTCTTAGGGGGCAGGGGAGGTAGTCGCCCAGGCGACCGGCGAACAGGCCCCCCCATGGGCAGCCGCTTCAGAGATGGCCCTCCCCTCCGTGGATCCAACATGGATTTCAGAGAACCCACAGAAGAGGAAAGAGCACAGAGACCACGACTCCAGCTTAAACCTCGAACAGTCGCGACGCCCCTCAATCAAGTAGCCAATCCCAACTCTGCTATCTTCGGGGGTGCCAGGCCTAGAGAGGAAGTCGTTCAAAAGGAGCAAGAATGA ARMEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWLQG*LLRGQGR*SPRRPANRPPHGQPLQRWPSPPWIQHGFQRTHRRGKSTETTTPA*TSNSRDAPQSSSQSQLCYLRGCQA*RGSRSKGARM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28896 ADIPOR2::LRTM2 ENSG00000006831.10::ENSG00000166159.11 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 369 TRUE 717 TRUE 259 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691213:+ chr12:1797740-1897840:+ chr12:1800379:+ LRTM2 ENSG00000166159.11 protein_coding + + chr12:1820267-1836753:+ chr12:1834267:+ chr12:1929433-1945919:+ chr12:1943433:+ chr12:1733503 chr12:1832972 NA NA chr12:1842669 chr12:1942138 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.03Mb];NEIGHBORS[31589] 32 23 32 18.14 ONLY_REF_SPLICE YES_LDAS 0.6374 GT 1.5329 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28897 PRKAR1B::MATCAP2 ENSG00000188191.16::ENSG00000164542.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 375 TRUE 721 TRUE 262 PRKAR1B ENSG00000188191.16 protein_coding - - chr7:549197-727650:- chr7:727590:- chr7:588834-767287:- chr7:767227:- MATCAP2 ENSG00000164542.13 protein_coding - - chr7:36324152-36390125:- chr7:36331079:- chr7:36363761-36429734:- chr7:36370688:- chr7:715434 chr7:36332606 NA NA chr7:755071 chr7:36372215 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 27 0 27 0 ONLY_REF_SPLICE YES_LDAS 0.3432 GT 1.5656 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28898 TRMT11::NCOA7 ENSG00000066651.20::ENSG00000111912.20 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 372 FALSE NA FALSE NA TRMT11 ENSG00000066651.20 protein_coding + + chr6:125986479-126203817:+ chr6:126021280:+ chr6:126307625-126524963:+ chr6:126342426:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125915333:+ chr6:126102307-126253180:+ chr6:126236479:+ chr6:126031396,chr6:126031396 chr6:125901128,chr6:125901125 NA NA chr6:126352542,chr6:126352542 chr6:126222274,chr6:126222271 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MethyltransfD12|88-130|0.84^Methyltransf_15|90-116|3.1^UPF0020|190-320|5.6e-15^N6_Mtase|205-316|4.6e-07^PrmA|212-288|8.8e-06^Met_10|212-261|3.1e-05^N6_N4_Mtase|214-248|6e-08^MethyltransfD12|215-250|0.00076^Cons_hypoth95|215-233|0.86^Methyltransf_15|218-270|2.6e-05^Cons_hypoth95|269-313|0.00036^MethyltransfD12|284-320|0.12^N6_N4_Mtase|303-329|0.0025^Nop52|338-416|2.7e-05 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.05Mb];LOCAL_REARRANGEMENT:+:[54400] 22 30 22 30 ONLY_REF_SPLICE YES_LDAS 0.6611 GT 1.5656 AG 1.7819 ENST00000334379.11 1-1260 ENST00000368357.7 2097-2829 chr6|+|[0]125986551-125986622[2]|[0]125993757-125993822[2]|[0]125995967-125996040[1]|[2]125998053-125998134[2]|[0]125998223-125998315[2]|[0]125998550-125998684[2]|[0]125999457-125999613[0]|[1]126008392-126008472[0]|[1]126011253-126011417[0]|[1]126012771-126012852[1]|[2]126012970-126013101[1]|[2]126021160-126021280[2]<==>chr6|+|[2]125915333-125915480[2]|[0]125920943-125921068[2]|[0]125922682-125922834[2]|[0]125927663-125927758[2]|[0]125928174-125928247[1]|[2]125928636-125928771[2] atggcgctgtcgtgtacccttaacaggtatctgctcctcatggcgcaggagcatctggagttccgcctgccggaaataaagtctttgcttttgctttttggaggtcagtttgccagcagtcaagaaacttatggaaagtcaccattttggattcttagcattccctctgaagatattgcaagaaatttgatgaaacggacagtgtgtgccaagtctatatttgaactatggggtcatggacaatctcctgaggagctgtacagttctcttaaaaactaccctgtggagaagatggttccatttctacattcggactctacatataaaataaagattcacacttttaataagacattgacacaagaagagaaaatcaagcgaatagatgcacttgaatttctgccatttgaaggaaaagtgaatttaaagaaaccgcaacatgtattttctgttttggaggattatggtttagacccaaactgcatccctgagaatccacataatatttattttggtagatggattgcagatggacagagagagcttattgagtcatacagtgtcaaaaagagacactttattggaaatacaagtatggatgctggtttgtcattcattatggctaaccatggaaaagtgaaagaaaatgatattgtctttgatccatttgttggaacaggtggcctgctgatagcatgtgctcattttggtgcatatgtgtatgggacagacatagactacaacacagttcatggcttgggaaaggctactaggaaaaaccagaagtggagaggaccagatgaaaacattagggccaatcttcgtcaatatggtttagagaagtattaccttgatgtcctggtttcagatgcatctaaaccttcctggaggaagggcacatattttgatgcaatcattactgatcctccatatggtatcagagaatctacaagaagaacaggttcacagaaggagataccaaaggggatagaaaaatgggaaaaatgtccagaaagccatgttcctgtttccttgagttatcatctgagtgatatgtttcttgacctgttaaacttcgcagctgagaccctcgttttaggtggaagactagtctattggttaccggtgtatacgccagaatacactgaagagatggtgccttggcacccttgcctggaactcgttagcaactgcgagcagaagctttccagtcacacatcaaggcgcttgatcacaatggaaaaggtgaagaaatttgagGGTGGATCATTTGTACACATTCTTTGTTCAGTGGTCTCCCGATGTCTATGGAAAAGATGCCAAAGAGCAAGGCTTTGTGGTGGTGGAGAAGGAAGAACTGAACATGATTGACAACTTCTTCAGTGAGCCAACAACCAAGAGCTGGGAGATCATCACTGTTGAAGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGGACGAAGAGGTGCTGCCTGTCCTACGGCCCCACAGCGCGCTCCTGGAGAATATGCACATCGAGCAGCTGGCCCGACGCCTTCCTGCAAGGGTGCAAGGGTATCCATGGAGACTGGCCTATAGCACGTTAGAGCACGGGACCAGCTTAAAGACGCTCTACCGGAAATCGGCATCACTAGACAGTCCTGTCCTATTGGTCATCAAAGATATGGATAATCAGATTTTTGGAGCATATGCAACTCATCCTTTCAAGTTCAGTGACCACTATTATGGCACAGGCGAAACTTTTCTCTACACATTCAGCCCTCATTTTAAGGTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATCAATGGAGACATAAGTTCTTTAGAACTTGGTGGTGGAGGGGGACGATTTGGTTTATGGCTAGATGCTGATTTATACCACGGACGAAGCAACTCTTGCAGCACTTTCAATAATGATATTCTTTCCAAAAAGGAAGACTTCATAGTTCAGGATCTGGAGGTGTGGGCATTTGATTGA MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIARNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLTQEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQRELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYVYGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGTYFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFAAETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFEGGSFVHILCSVVSRCLWKRCQRARLCGGGEGRTEHD*QLLQ*ANNQELGDHHC*RGKAQEEHMQLL*RRGRRGAACPTAPQRAPGEYAHRAAGPTPSCKGARVSMETGL*HVRARDQLKDALPEIGITRQSCPIGHQRYG*SDFWSICNSSFQVQ*PLLWHRRNFSLHIQPSF*GL*VEWRKFILYQWRHKFFRTWWWRGTIWFMARC*FIPRTKQLLQHFQ**YSFQKGRLHSSGSGGVGI*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus exact TRUE Lung adenocarcinoma LUNG exact 126342426|126314968|126334247|126342426 TRUE|FALSE|FALSE|TRUE 126242089|126242089|126243828|126249320 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28899 SIPA1L3::SPINT2 ENSG00000105738.11::ENSG00000167642.13 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 378 FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ SPINT2 ENSG00000167642.13 protein_coding + + chr19:38244035-38292615:+ chr19:38283627:+ chr19:38734675-38783255:+ chr19:38774267:+ chr19:37915723,chr19:37915719 chr19:38251260,chr19:38251253 NA NA chr19:38406363,chr19:38406359 chr19:38741900,chr19:38741893 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.04Mb];NEIGHBORS[35663] 19 8 19 8 ONLY_REF_SPLICE YES_LDAS 0.3432 GT 1.6895 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28901 ADIPOR2::LRTM2 ENSG00000006831.10::ENSG00000166159.11 ABC1 SRR8615407 SRR8639171 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 370 TRUE 717 TRUE 259 ADIPOR2 ENSG00000006831.10 protein_coding + + chr12:1688574-1788674:+ chr12:1691191:+ chr12:1797740-1897840:+ chr12:1800357:+ LRTM2 ENSG00000166159.11 protein_coding + + chr12:1820267-1836753:+ chr12:1834267:+ chr12:1929433-1945919:+ chr12:1943433:+ chr12:1733503 chr12:1832972 NA NA chr12:1842669 chr12:1942138 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.03Mb];NEIGHBORS[31589] 17 16 17 4.86 ONLY_REF_SPLICE YES_LDAS 0.2779 GT 1.8256 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28914 CREB3L2::PTN ENSG00000182158.16::ENSG00000105894.13 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 379 TRUE 730 TRUE 264 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- PTN ENSG00000105894.13 protein_coding - - chr7:137227341-137343774:- chr7:137254967:- chr7:136912088-137028520:- chr7:136939714:- chr7:137954059,chr7:137954067 chr7:137292412,chr7:137292418 NA NA chr7:137638805,chr7:137638813 chr7:136977159,chr7:136977165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none PTN_MK_N|34-95|1.7e-30^PTN_MK_C|37-41|0.62^PTN_MK_C|51-86|1.4^PTN_MK_C|96-158|3.7e-31^PTN_MK_N|106-110|0.39^PTN_MK_N|139-142|1.7^PTN_MK_N|155-162|0.51 ["CREB3L2:Oncogene"];["PTN:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.53Mb] 185 99 185 85.19 INCL_NON_REF_SPLICE YES_LDAS 2.8626 GT 1.8892 AG 1.9086 ENST00000330387.11 1-102 ENST00000348225.7 7-507 chr7|-|[2]138001604-138001705[0]<==>chr7|-|[2]137228020-137228075[1]|[0]137251230-137251391[1]|[0]137253464-137253637[1]|[0]137254859-137254967[0] atggaggtgctggagagcggggagcagggcgtgctgcagtgggaccgcaagctgagcgagctgtcagagcccggggacggcgaggccctcatgtaccacacgGCTCAACAGTACCAGCAGCAGCGTCGAAAATTTGCAGCTGCCTTCTTGGCATTCATTTTCATACTGGCAGCTGTGGATACTGCTGAAGCAGGGAAGAAAGAGAAACCAGAAAAAAAAGTGAAGAAGTCTGACTGTGGAGAATGGCAGTGGAGTGTGTGTGTGCCCACCAGTGGAGACTGTGGGCTGGGCACACGGGAGGGCACTCGGACTGGAGCTGAGTGCAAGCAAACCATGAAGACCCAGAGATGTAAGATCCCCTGCAACTGGAAGAAGCAATTTGGCGCGGAGTGCAAATACCAGTTCCAGGCCTGGGGAGAATGTGACCTGAACACAGCCCTGAAGACCAGAACTGGAAGTCTGAAGCGAGCCCTGCACAATGCCGAATGCCAGAAGACTGTCACCATCTCCAAGCCCTGTGGCAAACTGACCAAGCCCAAACCTCAAGCAGAATCTAAGAAGAAGAAAAAGGAAGGCAAGAAACAGGAGAAGATGCTGGATTAA MEVLESGEQGVLQWDRKLSELSEPGDGEALMYHTAQQYQQQRRKFAAAFLAFIFILAAVDTAEAGKKEKPEKKVKKSDCGEWQWSVCVPTSGDCGLGTREGTRTGAECKQTMKTQRCKIPCNWKKQFGAECKYQFQAWGECDLNTALKTRTGSLKRALHNAECQKTVTISKPCGKLTKPKPQAESKKKKKEGKKQEKMLD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28916 CREB3L2::PTN ENSG00000182158.16::ENSG00000105894.13 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 730 TRUE 264 CREB3L2 ENSG00000182158.16 protein_coding - - chr7:137874979-138002086:- chr7:138001604:- chr7:137559725-137686832:- chr7:137686350:- PTN ENSG00000105894.13 protein_coding - - chr7:137227341-137343774:- chr7:137254974:- chr7:136912088-137028520:- chr7:136939721:- chr7:137954059,chr7:137954067 chr7:137292412,chr7:137292418 NA NA chr7:137638805,chr7:137638813 chr7:136977159,chr7:136977165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CREB3L2:Oncogene"];["PTN:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.53Mb] 29 100 29 14.81 ONLY_REF_SPLICE YES_LDAS 0.4642 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cAMP responsive element binding protein 3-like 2 1 Yes fibromyxoid sarcoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 28917 VGLL4::PRKG1 ENSG00000144560.16::ENSG00000185532.20 AN3CA SRR8615413 SRR8639168 ENDOMETRIUM carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 380 FALSE NA FALSE NA VGLL4 ENSG00000144560.16 protein_coding - - chr3:11556069-11771350:- chr3:11643437:- chr3:11597543-11812824:- chr3:11684911:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:51467723:+ chr10:52750648-54058183:+ chr10:53227483:+ chr3:11621668,chr3:11621670 chr10:51318896,chr10:51318894 NA NA chr3:11663142,chr3:11663144 chr10:53078656,chr10:53078654 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VGLL4-PARTIAL|8-82~|1.3e-103 Pkinase-PARTIAL|~434-619|2.5e-75^PK_Tyr_Ser-Thr-PARTIAL|~434-602|4.2e-38^Kinase-like-PARTIAL|~434-598|5.8e-09^FTA2|440-506|0.00052^DUF4443|466-484|9.8^APH|477-506|0.00041^Pkinase_C|640-663|4.4e-05 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr10] 24 26 24 26 ONLY_REF_SPLICE YES_LDAS 0.5298 GT 1.9656 AG 1.5656 ENST00000430365.7 1-82 ENST00000401604.8 434-2016 chr3|-|[0]11643437-11643518[0]<==>chr10|+|[1]51467723-51467836[0]|[1]51804585-51804690[1]|[2]51907507-51907570[2]|[0]52054484-52054561[2]|[0]52062537-52062631[1]|[2]52133840-52133905[1]|[2]52161889-52161963[1]|[2]52251570-52251666[2]|[0]52271350-52271489[1]|[2]52272392-52272481[1]|[2]52280789-52280930[2]|[0]52282153-52282316[1]|[2]52288726-52288848[1]|[2]52288931-52288993[1]|[2]52290224-52290290[2]|[0]52293802-52293900[2] atgctatttatgaagatggacctgttgaactatcagtacttggacaagatgaacaacaatatcggcattctgtgctacgaagATGGTAAGGTTGAAGTTACAAAAGAAGGTGTGAAGTTGTGTACCATGGGTCCAGGAAAAGTGTTTGGGGAATTGGCTATTCTTTACAACTGTACCCGGACAGCGACCGTCAAGACTCTTGTAAATGTAAAACTCTGGGCCATTGATCGACAATGTTTTCAAACAATAATGATGAGGACAGGACTCATCAAGCATACCGAGTATATGGAATTTTTAAAAAGCGTTCCAACATTCCAGAGCCTTCCTGAAGAGATCCTCAGCAAGCTTGCTGATGTCCTTGAAGAGACCCACTATGAAAATGGAGAATATATTATCAGGCAAGGTGCAAGAGGGGACACCTTCTTTATCATCAGCAAAGGAACGGTAAATGTCACTCGTGAAGACTCACCGAGTGAAGACCCAGTCTTTCTTAGAACTTTAGGAAAAGGAGACTGGTTTGGAGAGAAAGCCTTGCAGGGGGAAGATGTGAGAACAGCAAACGTAATTGCTGCAGAAGCTGTAACCTGCCTTGTGATTGACAGAGACTCTTTTAAACATTTGATTGGAGGGCTGGATGATGTTTCTAATAAAGCATATGAAGATGCAGAAGCTAAAGCAAAATATGAAGCTGAAGCGGCTTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGATACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAACTGGTCCAGTTGAAAAGTGAAGAATCCAAAACGTTTGCAATGAAGATTCTCAAGAAACGTCACATTGTGGACACAAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCCGATTTCATAGTGAGACTGTACAGAACATTTAAGGACAGCAAATATTTGTATATGTTGATGGAAGCTTGTCTAGGTGGAGAGCTCTGGACCATTCTCAGGGATAGAGGTTCGTTTGAAGATTCTACAACCAGATTTTACACAGCATGTGTGGTAGAAGCTTTTGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCAGAAAATCTCATCCTAGATCACCGAGGTTATGCCAAACTGGTTGATTTTGGCTTTGCAAAGAAAATAGGATTTGGAAAGAAAACATGGACTTTTTGTGGGACTCCAGAGTATGTAGCCCCAGAGATCATCCTGAACAAAGGCCATGACATTTCAGCCGACTACTGGTCACTGGGAATCCTAATGTATGAACTCCTGACTGGCAGCCCACCTTTCTCAGGCCCAGATCCTATGAAAACCTATAACATCATATTGAGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCCAAAAATGCTGCTAATTTAATTAAAAAACTATGCAGGGACAATCCATCAGAAAGATTAGGGAATTTGAAAAATGGAGTAAAAGACATTCAAAAGCACAAATGGTTTGAGGGCTTTAACTGGGAAGGCTTAAGAAAAGGTACCTTGACACCTCCTATAATACCAAGTGTTGCATCACCCACAGACACAAGTAATTTTGACAGTTTCCCTGAGGACAACGATGAACCACCACCTGATGACAACTCAGGATGGGATATAGACTTCTAA MLFMKMDLLNYQYLDKMNNNIGILCYEDGKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEAAFFANLKLSDFNIIDTLGVGGFGRVELVQLKSEESKTFAMKILKKRHIVDTRQQEHIRSEKQIMQGAHSDFIVRLYRTFKDSKYLYMLMEACLGGELWTILRDRGSFEDSTTRFYTACVVEAFAYLHSKGIIYRDLKPENLILDHRGYAKLVDFGFAKKIGFGKKTWTFCGTPEYVAPEIILNKGHDISADYWSLGILMYELLTGSPPFSGPDPMKTYNIILRGIDMIEFPKKIAKNAANLIKKLCRDNPSERLGNLKNGVKDIQKHKWFEGFNWEGLRKGTLTPPIIPSVASPTDTSNFDSFPEDNDEPPPDDNSGWDIDF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE cGMP-dependent protein kinase AGC PKG Q13976 TRUE Uterus_corpus inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28934 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 384 TRUE 746 TRUE 266 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10718403:+ chr19:10828731-10944164:+ chr19:10829079:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10689179:+ chr19:10764980-10803076:+ chr19:10799855:+ chr19:10740914 chr19:10688311 NA NA chr19:10851590 chr19:10798987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MMR_HSR1-PARTIAL|33-161~|5.1e-06^Dynamin_N-PARTIAL|34-161~|2.4e-58 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_REARRANGEMENT:+:[25662] 15 11 15 5.69 ONLY_REF_SPLICE YES_LDAS 0.2399 GT 1.8892 AG 1.9899 ENST00000585892.5 1-161 ENST00000588657.6 2564-2697 chr19|+|[0]10718243-10718403[1]<==>chr19|+|[1]10689179-10689312[2] atgggcaaccgcgggatggaagagctgatcccgctggtcaacaaactgcaggacgccttcagctccatcggccagagctgccacctggacctgccgcagatcgctgtagtgggcggccagagcgccggcaagagctcggtgctggagaacttcgtgggccgGAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAA MGNRGMEELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRRLLTVELQLPGVRPELQWPSQLLPVLTRRLWQKRRPQHELPVQI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,TRUE 10798022|10799855|10799226,10787839 FALSE|TRUE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 28937 DNM2::ILF3 ENSG00000079805.19::ENSG00000129351.18 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 383 TRUE 746 TRUE 266 DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10718403:+ chr19:10828731-10944164:+ chr19:10829079:+ ILF3 ENSG00000129351.18 protein_coding + + chr19:10654304-10692400:+ chr19:10688550:+ chr19:10764980-10803076:+ chr19:10799226:+ chr19:10740914 chr19:10688311 NA NA chr19:10851590 chr19:10798987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MMR_HSR1-PARTIAL|33-161~|5.1e-06^Dynamin_N-PARTIAL|34-161~|2.4e-58 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_REARRANGEMENT:+:[25662] 9 16 9 10.31 ONLY_REF_SPLICE YES_LDAS 0.2238 GT 1.8892 AG 1.9329 ENST00000585892.5 1-161 ENST00000588657.6 2435-2697 chr19|+|[0]10718243-10718403[1]<==>chr19|+|[1]10688550-10688678[0]|[1]10689179-10689312[2] atgggcaaccgcgggatggaagagctgatcccgctggtcaacaaactgcaggacgccttcagctccatcggccagagctgccacctggacctgccgcagatcgctgtagtgggcggccagagcgccggcaagagctcggtgctggagaacttcgtgggccgACTACAGTGGTAGTGGAGGCCGAAGCGGCGGGAACAGCTACGGCTCAGGCGGGGCATCCTACAACCCAGGGTCACACGGGGGCTACGGCGGAGGTTCTGGGGGCGGCTCCTCATACCAAGGCAAACAAGGAGGCTACTCACAGTCGAACTACAACTCCCCGGGGTCCGGCCAGAACTACAGTGGCCCTCCCAGCTCCTACCAGTCCTCACAAGGCGGCTATGGCAGAAACGCAGACCACAGCATGAACTACCAGTACAGATAA MGNRGMEELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGRLQW*WRPKRREQLRLRRGILQPRVTRGLRRRFWGRLLIPRQTRRLLTVELQLPGVRPELQWPSQLLPVLTRRLWQKRRPQHELPVQI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast,Uterus_corpus exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 10934575|10934575|10934575,10829079 FALSE|FALSE|FALSE,TRUE 10798022|10799855|10799226,10787839 FALSE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 28942 MAST1::ZNF791 ENSG00000105613.10::ENSG00000173875.14 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 386 FALSE NA FALSE NA MAST1 ENSG00000105613.10 protein_coding + + chr19:12833951-12874952:+ chr19:12848057:+ chr19:12944765-12985766:+ chr19:12958871:+ ZNF791 ENSG00000173875.14 protein_coding + + chr19:12610918-12633840:+ chr19:12627721:+ chr19:12721732-12744654:+ chr19:12738535:+ chr19:12849750 chr19:12627385 NA NA chr19:12960564 chr19:12738199 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF1908|61-336|2.6e-153^Pkinase|376-647|3.4e-63^APH|376-461|0.07^PK_Tyr_Ser-Thr|377-602|1.1e-27^Kdo|445-516|0.00029^ABC1|448-521|1.2e-07^Kinase-like|474-587|1.5e-06^APH|490-523|6e-05^Haspin_kinase|490-521|0.00015 zf-H2C2_2-PARTIAL|~192-197|2.1e-10^zf-C2H2-PARTIAL|~192-210|1.4e-05^zf-C2H2_4-PARTIAL|~192-210|3.1e-05^zf-C2H2_6-PARTIAL|~192-203|0.01^zf-C2H2_jaz-PARTIAL|~192-208|0.22^Zn_ribbon_SprT-PARTIAL|~192-197|0.00026^Zn_ribbon_SprT-PARTIAL|~192-224|0.057^zf-trcl-PARTIAL|~192-196|0.00015^Zn-ribbon_8-PARTIAL|~192-195|0.0023^Zn-ribbon_8-PARTIAL|~192-223|0.028^zf-C2H2_11-PARTIAL|~192-209|0.031^zf_UBZ-PARTIAL|~192-200|0.016^XPA_N-PARTIAL|~192-198|0.44^C1_4-PARTIAL|~192-211|0.046^C1_4-PARTIAL|~192-239|0.0027^zf-AN1-PARTIAL|~192-195|0.22^DUF5830-PARTIAL|~192-202|0.029^TBPIP_C-PARTIAL|~192-210|0.3^DUF3268-PARTIAL|~192-208|0.01^zf-met-PARTIAL|~192-208|1.5^YEATS-PARTIAL|~192-194|0.18^TFIIS_C-PARTIAL|~192-195|0.27^zf-C2HC_2|200-209|0.81^zf-H2C2_2|202-227|1.3e-12^DUF5830|202-235|0.0028^Topo_VI_alpha|203-224|1.4^zf-trcl|214-225|0.068^zf-AN1|214-225|0.1^DUF3268|215-251|0.01^zf-C2H2|216-238|9e-06^zf-C2H2_4|216-238|3.7e-06^zf-C2H2_6|216-226|0.0015^zf-C2H2_jaz|216-237|0.018^Zn_ribbon_SprT|216-253|0.00066^Zn-ribbon_8|216-251|0.0028^zf_UBZ|216-228|0.013^TBPIP_C|216-239|0.21^zf-met|216-237|2.1^TFIIS_C|216-225|0.068^zf-C2H2_11|217-234|0.027^XPA_N|217-228|0.16^zf-C2HC_2|217-236|0.017^C1_4|218-267|0.013^DUF5830|231-253|0.33^Topo_VI_alpha|231-252|0.14^YEATS|232-232|1.8^zf-H2C2_2|233-254|2.1e-11^zf-trcl|242-254|0.014^zf-AN1|242-253|0.067^zf-C2H2|244-266|6.4e-07^zf-C2H2_4|244-266|8.9e-06^zf-C2H2_6|244-266|5.2e-05^zf-C2H2_jaz|244-265|0.00046^Zn-ribbon_8|244-253|0.02^zf_UBZ|244-262|0.0036^TBPIP_C|244-267|0.025^zf-met|244-263|0.027^TFIIS_C|244-253|0.092^zf-C2H2_11|245-263|0.011^XPA_N|246-254|0.02^C1_4|246-295|0.0041^Zap1_zf1|247-264|3.1^zf-H2C2_2|262-282|1.4e-09^DUF5830|264-288|0.18^zf-trcl|269-284|7.8e-05^YEATS|269-278|8.6^zf-AN1|270-281|0.028^DUF3268|271-318|0.012^zf-C2H2|272-294|3.2e-08^zf-C2H2_4|272-294|0.00031^zf-C2H2_6|272-281|0.0039^zf-C2H2_jaz|272-291|0.018^Zn_ribbon_SprT|272-309|5.6e-05^Zn-ribbon_8|272-308|0.0053^zf-C2H2_11|272-281|0.16^zf_UBZ|272-282|0.03^TBPIP_C|272-282|0.25^zf-met|272-282|4.9^TFIIS_C|272-281|0.026^XPA_N|273-282|0.008^zf-C2HC_2|273-293|0.096^C1_4|274-323|0.0006^DUF5830|286-317|0.0064^zf-H2C2_2|287-311|1.2e-11^Topo_VI_alpha|287-308|1.9^YEATS|295-320|1.5^zf-trcl|298-309|0.027^zf-AN1|298-309|0.019^zf-C2H2|300-322|0.00014^zf-C2H2_4|300-322|2.2e-05^zf-C2H2_6|300-309|0.014^zf-C2H2_jaz|300-319|0.32^Zn-ribbon_8|300-335|0.0043^zf-C2H2_11|300-321|0.034^zf_UBZ|300-314|0.046^TBPIP_C|300-322|0.23^TFIIS_C|300-310|0.022^XPA_N|301-310|0.1^zf-met|301-320|1.4^zf-C2HC_2|301-321|0.0064^Zn_ribbon_SprT|310-335|0.0089^DUF5830|313-338|0.0075^Topo_VI_alpha|315-336|2^zf-H2C2_2|318-338|1.3e-11^YEATS|324-334|1.2^zf-trcl|326-337|0.017^zf-AN1|326-337|0.013^DUF3268|327-377|0.034^zf-C2H2|328-350|6.2e-08^zf-C2H2_4|328-350|3.1e-06^zf-C2H2_6|328-338|0.00023^zf-C2H2_jaz|328-338|0.022^Zn_ribbon_SprT|328-365|0.00025^Zn-ribbon_8|328-367|1.2e-05^zf-C2H2_11|328-340|0.022^zf_UBZ|328-339|0.0063^TBPIP_C|328-350|0.14^zf-met|328-339|0.43^TFIIS_C|328-337|0.019^XPA_N|329-337|0.014^zf-C2HC_2|329-339|0.82^C1_4|330-378|0.18^Zap1_zf1|331-338|1.2^YEATS|340-362|0.8^zf-H2C2_2|343-367|4.5e-12^DUF5830|344-374|0.0086^zf-trcl|354-365|0.024^zf-AN1|354-365|0.029^zf-C2H2|356-378|1.3e-08^zf-C2H2_4|356-378|3.5e-05^zf-C2H2_6|356-368|0.00015^zf-C2H2_jaz|356-377|0.01^Zn_ribbon_SprT|356-392|7.4e-05^Zn-ribbon_8|356-369|0.0014^zf-C2H2_11|356-366|0.056^zf_UBZ|356-365|0.033^TBPIP_C|356-379|0.074^zf-met|356-378|0.018^TFIIS_C|356-365|0.024^XPA_N|357-366|0.0061^zf-C2HC_2|357-376|0.14^C1_4|358-407|0.0024^DUF5830|370-394|0.039^zf-H2C2_2|371-395|2.5e-11^Topo_VI_alpha|371-391|0.089^YEATS|380-402|0.74^zf-trcl|382-395|0.022^zf-AN1|382-393|0.016^DUF3268|383-417|0.0084^zf-C2H2|384-406|1.2e-07^zf-C2H2_4|384-406|1.1e-05^zf-C2H2_6|384-406|3.6e-05^zf-C2H2_jaz|384-404|0.05^Zn_ribbon_SprT|384-421|7.5e-05^Zn-ribbon_8|384-419|0.00088^zf_UBZ|384-394|0.018^TBPIP_C|384-406|0.48^zf-met|384-403|0.0081^zf-C2H2_11|385-400|0.27^XPA_N|385-393|0.061^zf-C2HC_2|385-394|0.0027^TFIIS_C|385-421|0.24^C1_4|386-421|0.033^Zap1_zf1|387-402|0.019^Topo_VI_alpha|398-416|4.7^zf-H2C2_2|399-422|7.3e-11^DUF5830|408-420|4.7^zf-trcl|410-422|0.066^zf-AN1|410-421|0.069^zf-C2H2|412-434|2.6e-08^zf-C2H2_4|412-434|1.3e-06^zf-C2H2_6|412-434|2.8e-06^zf-C2H2_jaz|412-432|1.3e-06^Zn-ribbon_8|412-424|0.037^zf_UBZ|412-423|0.12^TBPIP_C|412-435|0.008^zf-met|412-431|0.0048^zf-C2H2_11|413-434|0.07^XPA_N|413-422|0.044^C1_4|413-463|0.0033^Zap1_zf1|415-432|0.0015^zf-H2C2_2|426-450|4.1e-11^DUF5830|427-447|0.18^zf-trcl|437-452|0.00015^zf-AN1|439-449|0.02^zf-C2H2|440-462|1.9e-08^zf-C2H2_4|440-462|3.1e-06^zf-C2H2_6|440-462|0.0031^zf-C2H2_jaz|440-461|0.0078^Zn_ribbon_SprT|440-476|7.7e-05^Zn-ribbon_8|440-449|0.0035^zf-C2H2_11|440-449|0.044^zf_UBZ|440-458|0.047^TBPIP_C|440-463|0.089^DUF3268|440-490|0.00012^zf-met|440-462|0.0031^TFIIS_C|440-449|0.053^XPA_N|441-449|0.19^zf-C2HC_2|441-460|0.77^C1_4|442-491|0.011^Zap1_zf1|444-458|3.4^zf-H2C2_2|454-479|5.2e-13^Topo_VI_alpha|455-476|0.67^DUF5830|459-489|0.00083^YEATS|465-474|2.7^zf-trcl|466-477|0.074^zf-AN1|466-477|0.025^zf-C2H2|468-490|2.8e-05^zf-C2H2_4|468-490|4.4e-05^zf-C2H2_6|468-478|0.023^zf-C2H2_jaz|468-478|0.37^Zn-ribbon_8|468-503|0.0044^zf_UBZ|468-480|0.022^TBPIP_C|468-490|0.42^zf-met|468-489|1.6^TFIIS_C|468-477|0.068^zf-C2H2_11|469-479|0.13^XPA_N|469-482|0.019^zf-C2HC_2|469-488|0.053^C1_4|470-505|0.71^Zn_ribbon_SprT|478-505|0.031^DUF5830|481-504|0.099^Topo_VI_alpha|483-504|0.61^zf-H2C2_2|486-507|1.7e-11^YEATS|491-502|1.7^zf-trcl|494-531|0.00028^zf-AN1|494-505|0.042^DUF3268|495-537|0.25^zf-C2H2|496-518|1.4e-08^zf-C2H2_4|496-518|6.2e-06^zf-C2H2_6|496-518|2.7e-05^zf-C2H2_jaz|496-516|0.0004^Zn-ribbon_8|496-505|0.023^zf_UBZ|496-505|0.029^TBPIP_C|496-519|0.094^zf-met|496-516|0.0059^TFIIS_C|496-505|0.04^zf-C2H2_11|497-516|0.22^XPA_N|497-505|0.013^C1_4|498-547|0.021^zf-C2HC_2|498-514|4.5^Zap1_zf1|499-515|4.8^YEATS|510-530|1.6^zf-H2C2_2|512-534|3e-12^DUF5830|519-534|0.25^zf-trcl|522-559|0.0043^zf-AN1|522-533|0.022^zf-C2H2|524-546|6.9e-08^zf-C2H2_4|524-546|6.2e-05^zf-C2H2_6|524-534|0.00076^zf-C2H2_jaz|524-543|0.0018^Zn_ribbon_SprT|524-561|2.2e-05^Zn-ribbon_8|524-559|0.00024^zf-C2H2_11|524-545|4e-05^zf_UBZ|524-542|0.0015^TBPIP_C|524-548|0.013^zf-met|524-544|0.76^TFIIS_C|524-533|0.022^XPA_N|525-533|0.0098^zf-C2HC_2|525-544|0.72^Zap1_zf1|527-542|3.5^YEATS|533-558|0.04^zf-H2C2_2|539-562|1.2e-08^DUF5830|543-564|0.081^zf-trcl|550-561|0.028^zf-AN1|550-561|0.076^zf-C2H2_jaz|552-572|0.0088^C1_4|552-575|0.51^zf-C2H2|553-574|3.3e-09^zf-C2H2_4|553-574|1.1e-06^zf-C2H2_6|553-574|4.5e-05^Zn-ribbon_8|553-565|0.027^zf-C2H2_11|553-572|3e-05^zf_UBZ|553-568|0.029^XPA_N|553-564|0.018^TBPIP_C|553-575|0.035^zf-met|553-572|2.8^zf-C2HC_2|553-572|0.041^TFIIS_C|553-561|0.37^Zap1_zf1|555-571|0.05^zf-H2C2_2|566-574|0.16 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.20Mb] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.116 GT 1.9086 AG 1.7819 ENST00000251472.9 1-774 ENST00000343325.9 192-1731 chr19|+|[0]12838573-12838655[1]|[2]12840446-12840534[0]|[1]12840991-12841066[1]|[2]12843529-12843607[2]|[0]12847290-12847450[1]|[2]12847612-12847687[2]|[0]12847848-12848057[2]<==>chr19|+|[2]12627721-12629260[2] atgtctgactctctctggaccgcgctttctaatttctcgatgccctccttccccggcggcagtatgttccgccgcaccaagagctgccgcaccagtaatcggaaaagcctcatcctgaccagcacttcacccacgctaccgagaccccactccccgctgccaggtcacctaggcagcagtcccctggacagcccccgaaacttctcccccaacacccccgcccacttctcgtttgcctcctcccgaagggcggacggacgccggtggtctctggcctcgctcccttcatctggctatggcaccaacacgcccagttccaccgtctcgtcctcctgctcctcccaggagcgccttcaccagctgccctaccagcccacggtggacgagctccacttcctctccaaacacttcgggagcaccgagagcatcacagacgaggatggtggccgtcgctccccagccgtgcggccccgctcacggagcctcagccccgggcgctccccctcctcctacgacaacgagatcgtgatgatgaatcacgtctacaaggagaggttcccgaaggccactgcgcagatggaggagaagctgcgcgactttacccgcgcctacgaacccgacagcgttctgcctctggccgatggcgtgctcagcttcatccaccaccagatcatcgagctggcccgggactgcctgaccaagtcccgtgacggcctcatcaccacggtctacttctatgaattgcaggagaacctggagaagctccttcaagacAAGCCATACGGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTGCAGAAAACTTCAGTCCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACTATCTGTGGAAAAGCCTTCATGCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATGTAAGGAGTGTGAGAAAGCCTTTAGTTATCTCAAATCCTTTCAAAGACATGAAAGGAGTCACACTGGAGAAAAACCCTATAAATGTAAACAATGTGGAAAAACCTTCATATATCACCAGCCCTTTCAAAGACATGAGCGGACTCACATTGGAGAAAAACCCTATGAATGTAAGCAATGTGGAAAAGCTCTTAGTTGTTCCAGTTCGCTTCGAGTTCATGAAAGGATTCACACTGGAGAAAAGCCCTATGAATGTAAACAATGTGGGAAAGCCTTCAGTTGTTCCAGTTCTATTCGAGTACACGAAAGAACTCACACTGGAGAGAAACCCTATGCATGTAAGGAATGTGGGAAAGCCTTCATTTCCCACACAAGTGTTCTAACACACATGATAACACACAACGGAGATAGACCTTATAAATGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGTTTTTTACGAGTACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTCAGATGTTCCACCTCCATTCAAATTCATGAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTAAAGAATGTGGGAAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACACGTGAGAGTGCATACTGGAGAGAAACCCTATAAGTGTAAAGAATGTGGGAAAGCCTTTAGTAGAATCAGTTACTTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTACGAATGTAAAAAATGTGGGAAAACTTTCAATTATCCTCTAGATTTGAAAATCCACAAGAGAAATCACACTGGAGAAAAACCCTATGAGTGTAAGGAATGTGCAAAAACCTTCATTTCTCTTGAGAACTTTCGAAGACACATGATCACCCACACTGGAGACGGACCTTATAAATGTAGGGACTGTGGGAAGGTGTTCATTTTTCCTAGTGCGTTACGAACACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCCTTTAGTTGTTCTAGTTACATTCGGATACATAAAAGAACTCACACTGGGGAGAAACCTTATGAATGTAAGGAATGCGGGAAGGCCTTTATTTATCCCACAAGCTTTCAAGGACACATGAGAATGCATACTGGAGAGAAACCCTATAAATGTAAAGAATGTGGGAAGGCCTTTAGTCTTCACAGTTCCTTTCAAAGACATACAAGAATTCACAATTATGAGAAACCTCTTGAATGTAAGCAATGTGGAAAAGCCTTCAGTGTGTCCACATCCTTAAAAAAACATATGAGAATGCACAATCGATAG MSDSLWTALSNFSMPSFPGGSMFRRTKSCRTSNRKSLILTSTSPTLPRPHSPLPGHLGSSPLDSPRNFSPNTPAHFSFASSRRADGRRWSLASLPSSGYGTNTPSSTVSSSCSSQERLHQLPYQPTVDELHFLSKHFGSTESITDEDGGRRSPAVRPRSRSLSPGRSPSSYDNEIVMMNHVYKERFPKATAQMEEKLRDFTRAYEPDSVLPLADGVLSFIHHQIIELARDCLTKSRDGLITTVYFYELQENLEKLLQDKPYGRETL*R*RR*SMCRKLQSQSQCDEEDCRSKTI*VYYLWKSLHASLIPY*THEVSHWIRAI*EAI*M*GV*ESL*LSQILSKT*KESHWRKTL*M*TMWKNLHISPALSKT*ADSHWRKTL*M*AMWKSS*LFQFASSS*KDSHWRKAL*M*TMWESLQLFQFYSSTRKNSHWRETLCM*GMWESLHFPHKCSNTHDNTQRR*TL*MQRMWKGIHFSQFFTST*KNSHWRETL*M*TMW*SLQMFHLHSNS*KNSYWREAL*M*RMWEIFQCTPSLSSTRESAYWRETL*V*RMWESL**NQLLSNT*KDSHWRETLRM*KMWENFQLSSRFENPQEKSHWRKTL*V*GMCKNLHFS*ELSKTHDHPHWRRTL*M*GLWEGVHFS*CVTNT*KNSHWRETL*M*TMWKSL*LF*LHSDT*KNSHWGETL*M*GMREGLYLSHKLSRTHENAYWRETL*M*RMWEGL*SSQFLSKTYKNSQL*ETS*M*AMWKSLQCVHILKKTYENAQSI FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 1 AGC MAST Q9Y2H9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28943 CCNY::CREM ENSG00000108100.18::ENSG00000095794.21 CORL24 SRR8615422 SRR8639224 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 387 FALSE NA FALSE NA CCNY ENSG00000108100.18 protein_coding + + chr10:35247025-35572669:+ chr10:35337207:+ chr10:35535953-35861597:+ chr10:35626135:+ CREM ENSG00000095794.21 protein_coding + + chr10:35126791-35212958:+ chr10:35148368:+ chr10:35415719-35501886:+ chr10:35437296:+ chr10:35465959 chr10:35134177 NA NA chr10:35754887 chr10:35423105 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cyclin-PARTIAL|126-154~|6.4e-16^Cyclin_N-PARTIAL|141-154~|2.9e-17 Fcf2-PARTIAL|~45-81|0.017^pKID|69-107|1.4e-22^bZIP_1|251-307|4e-24^Fcf2|254-282|0.0026^bZIP_Maf|255-302|2.2e-06^bZIP_2|258-304|2e-10 ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.03Mb];LOCAL_REARRANGEMENT:+:[34067] 6 6 6 5.34 ONLY_REF_SPLICE YES_LDAS 0.1315 GT 1.7056 AG 1.8295 ENST00000339497.7 1-154 ENST00000479070.5 45-939 chr10|+|[0]35337054-35337207[0]<==>chr10|+|[2]35148368-35148491[2]|[0]35178889-35178986[1]|[2]35179134-35179276[0]|[1]35188200-35188388[0]|[1]35201451-35201486[0]|[1]35206895-35207051[1]|[2]35211656-35211803[2] atggggaacactacctcgtgctgcgtgtcgtccagtcccaagctccggaggaatgcccactcccggctggagtcctaccggccagacacggacctgagccgcgaggacacgggctgcaacctgcagcacatcagcgaccgggagaacatagacgACAAATGACCATGGAAACAGTTGAATCCCAGCATGATGGAAGTATAACAGCTTCTTTGACAGAGAGCAAGTCTGCTCATGTGCAGACTCAGACTGGCCAAAATTCAATCCCTGCTTTAGCTCAGGTAGCAGCAATTGCAGAGACAGATGAATCTGCAGAATCAGAAGGTGTAATTGATTCTCATAAACGTAGAGAAATCCTTTCACGAAGACCCTCTTATAGGAAAATACTGAATGAACTGTCCTCTGATGTGCCTGGTGTTCCCAAGATTGAAGAAGAGAGATCAGAGGAAGAAGGAACACCACCTAGTATTGCTACCATGGCAGTACCAACTAGCATATATCAGACTAGCACGGGGCAATACATTGCTATAGCCCAAGGTGGAACAATCCAGATTTCTAACCCAGGATCTGATGGTGTTCAGGGACTGCAGGCATTAACAATGACAAATTCAGGAGCTCCTCCACCAGGTGCTACAATTGTACAGTACGCAGCACAATCAGCTGATGGCACACAGCAGTTCTTTGTCCCAGGCAGCCAGGTTGTTGTTCAAGATGAGGAAACTGAACTTGCCCCAAGTCACATGGCTGCTGCCACTGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTGCTGCTTTGCCACAGGGAGTGGTGATGGCTGCATCGCCCGGAAGTTTGCACAGTCCCCAGCAGCTGGCAGAAGAAGCAACACGCAAACGAGAGCTGAGGCTAATGAAAAACAGGGAAGCTGCCAAAGAATGTCGACGTCGAAAGAAAGAATATGTAAAATGTCTGGAGAGCCGAGTTGCAGTGCTGGAAGTCCAGAACAAGAAGCTTATAGAGGAACTTGAAACCTTGAAAGACATTTGTTCTCCCAAAACAGATTACTAG MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENIDDK*PWKQLNPSMMEV*QLL*QRASLLMCRLRLAKIQSLL*LR*QQLQRQMNLQNQKV*LILINVEKSFHEDPLIGKY*MNCPLMCLVFPRLKKRDQRKKEHHLVLLPWQYQLAYIRLARGNTLL*PKVEQSRFLTQDLMVFRDCRH*Q*QIQELLHQVLQLYSTQHNQLMAHSSSLSQAARLLFKMRKLNLPQVTWLLPLVTCQLTRSELLLLLCHREW*WLHRPEVCTVPSSWQKKQHANES*G**KTGKLPKNVDVERKNM*NVWRAELQCWKSRTRSL*RNLKP*KTFVLPKQIT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 35626135|35626135 TRUE|TRUE 35500584|35500182 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28947 BNIP3::MARCHF6 ENSG00000176171.12::ENSG00000145495.17 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 388 FALSE NA FALSE NA BNIP3 ENSG00000176171.12 protein_coding - - chr10:131967684-131981967:- chr10:131981761:- chr10:133781188-133795471:- chr10:133795265:- MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10415488:+ chr5:10353807-10440500:+ chr5:10415600:+ chr10:131976061,chr10:131976063 chr5:10415102,chr5:10415100 NA NA chr10:133789565,chr10:133789567 chr5:10415214,chr5:10415212 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BNIP3-PARTIAL|10-46~|1.3e-78 none ["BNIP3:Oncogene"] 179 241 179 241 ONLY_REF_SPLICE YES_LDAS 5.4088 GT 1.7465 AG 1.7465 ENST00000368636.9 1-46 ENST00000503788.5 1652-2418 chr10|-|[0]131981761-131981806[0]<==>chr5|+|[1]10415488-10415669[2]|[0]10417270-10417404[2]|[0]10423735-10423824[2]|[0]10426390-10426522[0]|[1]10429893-10430028[1]|[2]10433594-10433684[2] atgtcgcagaacggagcgcccgggatgcaggaggagagcctgcaggTATTTGCTGGCCGTTGGTTAATGTCGTTTTGGACGGGGACTGCCAAAATCCATGAGCTCTACACAGCTGCTTGTGGTCTCTATGTTTGCTGGCTAACCATAAGGGCTGTGACGGTGATGGTGGCATGGATGCCTCAGGGACGCAGAGTGATCTTCCAGAAGGTTAAAGAGTGGTCTCTCATGATCATGAAGACTTTGATAGTTGCGGTGCTGTTGGCTGGAGTTGTCCCTCTCCTTCTGGGGCTCCTGTTTGAGCTGGTCATTGTGGCTCCCCTGAGGGTTCCCTTGGATCAGACTCCTCTTTTTTATCCATGGCAGGACTGGGCACTTGGAGTCCTGCATGCCAAAATCATTGCAGCTATAACATTGATGGGTCCTCAGTGGTGGTTGAAAACTGTAATTGAACAGGTTTACGCAAATGGCATCCGGAACATTGACCTTCACTATATTGTTCGTAAACTGGCAGCTCCCGTGATCTCTGTGCTGTTGCTTTCCCTGTGTGTACCTTATGTCATAGCTTCTGGTGTTGTTCCTTTACTAGGTGTTACTGCGGAAATGCAAAACTTAGTCCATCGGCGGATTTATCCATTTTTACTGATGGTCGTGGTATTGATGGCAATTTTGTCCTTCCAAGTCCGCCAGTTTAAGCGCCTTTATGAACATATTAAAAATGACAAGTACCTTGTGGGTCAACGACTCGTGAACTACGAACGGAAATCTGGCAAACAAGGCTCATCTCCACCACCTCCACAGTCATCCCAAGAATAA MSQNGAPGMQEESLQVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGSSPPPPQSSQE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28948 CHD2::AGBL1 ENSG00000173575.24::ENSG00000273540.5 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 390 FALSE NA FALSE NA CHD2 ENSG00000173575.24 protein_coding + + chr15:92886203-93027996:+ chr15:92929091:+ chr15:93429433-93571226:+ chr15:93472321:+ AGBL1 ENSG00000273540.5 protein_coding + + chr15:86079871-87049169:+ chr15:86224914:+ chr15:86623102-87592400:+ chr15:86768145:+ chr15:92932605,chr15:92932602 chr15:86195086,chr15:86195080 NA NA chr15:93475835,chr15:93475832 chr15:86738317,chr15:86738311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF515|32-116|5.4e-05^DUF515|268-351|0.12^Chromo|276-289|0.02^Chromo|312-347|2.9e-13^Chromo|392-460|6.4e-19 Pepdidase_M14_N|597-667|1.5e-11^Peptidase_M14|763-867|7.3e-13 ["CHD2:FoundationOne_panel","CHD2:Oncogene","CHD2:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:5.87Mb] 57 39 57 39 ONLY_REF_SPLICE YES_LDAS 1.2364 GT 1.6729 AG 1.9329 ENST00000626782.2 1-482 ENST00000614907.3 489-3366 chr15|+|[0]92904908-92905008[1]|[2]92924321-92924552[2]|[0]92927244-92927330[2]|[0]92929030-92929091[1]<==>chr15|+|[2]86224914-86224951[0]|[1]86247671-86247879[2]|[0]86256853-86257018[0]|[1]86257964-86258031[2]|[0]86262778-86262894[2]|[0]86264258-86264838[1]|[2]86266374-86266457[1]|[2]86266990-86267076[1]|[2]86269919-86270067[0]|[1]86271619-86271706[1]|[2]86279639-86279783[2]|[0]86295255-86295408[0]|[1]86397366-86397546[1]|[2]86522810-86522939[2]|[0]86546002-86546133[2]|[0]86554361-86554537[2]|[0]86674273-86674436[1]|[2]86907087-86907294[2] atggctcataaacaaagggaagattatttgaacttgtccccatgcgtttttacttggtaccgtacattttctcagttggcatttgatggagaaaaactcagtcactcagcctctgaagaagcttcgggttcagactcaggcagtcagtcggaaagtgagcagggaagtgatccaggaagtggacatggcagcgagtcgaacagcagctctgaatcttctgagagtcagtcggaatctgagagcgaatcagcaggttccaaatcccagccagtcctcccagaagccaaagagaagccagcctctaagaaggaacggatagctgatgtgaagaagatgtgggaagaatatcctgatgtttatggggtcaggcggtcaaaccgaagcagacaagaaccatcgcgatttaatattaaggaagaggcaagtagcgggtctgagagtgggagcccaaaaagaagaggccagaggcagctgaaaaaacaGGCAGCCACTGAAGTTTTGGCAGCATTGCTGAAATCCAAGTCGAACGGCCGCAGAGCAGTGAACCGAGGCTACGTCACCAGCCTGCTCGGGCTGCACCAGGACTGGCACAGCCATGACACAGCCAACGCCTACGTGCAGATCCGACGGGGCTTGCTGCTCTGCCTCAGGCACATTGCTGCCCTCCGGTCCGGCAGGGAGGCCTTCCTGGCAGCACAGGGCATGGAGATCCTCTTCAGCACCACACAGAACTGCCTGGATGACAAGAGCATGGAGCCCGTCATCTCTGTGGTGCTTCAGATCCTGAGGCAGTGCTACCCTACGAGTCCACTTCCCTTGGTCACAGCCAGCAGTGCCTATGCCTTCCCGGTCCCCGGGTGCATCACCACTGAACCTCCACATGATCTACCTGAAGAGGATTTTGAAGATGATGGCGATGATGAAGTGGACAAAGACTCTGATACTGAAGATGGGAAAGTGGAAGATGATGACTTGGAAACAGACGTGAACAAGCTGAGTTCCAAACCTGGTCTTGACCGACCTGAAGAGGAACTGATGCAATATGAGGTGATGTGTCTTGAGCTCTCCTATAGCTTTGAGGAACTGCAGTCCAAACTTGGAGATGATTTGAACTCTGAAAAGACTCAGTATGCCAATCACCACCACATTCCAGCCGCTGCCTCCTCAAAACAGCATTGCTACAGCAAGGACCAAAGCTCCTGTGGGCAAGAAAGAGAATATGCTGTCCAGACTTCCCTTCTGTGCAGGGTGAAGACGGGAAGGTCCACTGTGCATCTAGGCTCCAAAAAAAATCCTGGAGTGAACCTGTACCAAAATGTGCAATCCAATAGTCTCAGGAGAGATTCTTCTGAAAGTGAAATCCCTGACATTCAGGCTTCCCCGAAAGCAGATGCCTGGGACGTAGATGCAATTTTCTGCCCAAGGATGAGTGCCTCCTTTTCTAATTCCACTAGGACTAGAGAAGTTGTCAAAGTAATAGATAAGCTTCTGCAGACACATCTGAAGCGTGTCCCTTTCCACGATCCCTATCTTTATATGGCCAAAGCCAGAAGAACCAGCTCTGTGGTGGACTTCAAGATGATGGCATTTCCTGATGTCTGGGGACACTGTCCCCCTCCCACCACCCAGCCTATGTTGGAACGAAAATGTGGAGTCCAAAGGATCAGGATATTTGAGGATATTCGGAGGCTCATCCAGCCAAGTGATGTTATAAATAAAGTTGTCTTCAGTTTAGATGAGCCTTGGCCTTTGCAAGACAATGCTTCCAATTGTTTACGGTTCTTCTCCAAATTTGAGTCAGGAAATCTTCGCAAAGCCATCCAAGTGCGTGAGTTCGAGTATGACTTGCTGGTCAACGCAGATGTGAATAGCACCCAGCACCAGCAGTGGTTCTATTTCAAAGTGAGCGGTATGCAGGCGGCCATCCCTTACCACTTCAACATCATCAACTGTGAGAAGCCCAACAGCCAGTTTAATTATGGGATGCAGCCCACCCTATATTCTGTGAAGGAGGCTCTTCTTGGCAAACCCACCTGGATAAGGACAGGCCATGAAATATGTTATTACAAAAATCATTATCGCCAGAGTACAGCTGTTGCAGGCGGAGCATCTGGGAAGTGCTACTATACCCTCACCTTTGCTGTCACCTTCCCACACAGTGAGGATGTCTGCTACCTGGCCTACCACTATCCCTATACCTACACAGCCCTCATGACTCATCTTGACATCCTGGAAAAGAGTGTCAACCTCAAAGAGGTCTACTTCCGGCAAGATGTTCTCTGCCAGACGCTGGGAGGGAATCCGTGTCCCTTGGTGACCATCACGGCCATGCCTGAGTCCAACAGTGATGAGCATCTAGAGCAGTTCCGACATCGTCCATATCAGGTGATCACTGCTCGAGTTCATCCAGGAGAGAGCAATGCCAGTTGGGTGATGAAGGGTACCTTGGAGTTCCTGGTCAGCAGTGACCCTGTGGCTAGGCTCTTGAGGGAAAACTTCATCTTCAAGATCATACCCATGCTCAACCCAGATGGTGTCATCAACGGCAACCACAGATGCTCACTGAGCGGGGAAGATTTGAACAGACAATGGCTTTCTCCCAGTGCTCATCTGCAGCCAACCATTTACCATGCCAAAGGCCTCCTCTACCACCTGAGCAGCATTGGCCGAAGTCCCGTGGTTTTCTGTGACTTCCATGGCCACTCCCAAAAGAAGAATGTGTTCCTTTATGGCTGTAGCATCAAGGAAACCTTGTGGCAAGCAGCATGCACTGTGGGCACATCTACTATCCTAGAGGAGGTCAACTACAGGACTCTTCCCAAAATCCTTGATAAGCTAGCACCAGCATTCACAATGAGCAGCTGCAGCTTTCTCGTGGAGAAATCTCGAGCTTCCACGGCCCGGGTGGTGGTGTGGAGAGAGATGGGGGTGTCCAGAAGCTACACCATGGAAAGCAGCTACTGTGGCTGCAACCAGGGCCCTTATCAGGGTCTACAGTTTGGTACCAGAGAACTGGAGGAGATGGGAGCCATGTTCTGTTTGGGCCTCCTCATCCTGGAGCTCAAATCTGCCAGCTGCAGCCATCAGCTCCTGGCTCAAGCTGCAACTCTGCTGAGTGCTGAGGAGGACGCTCTGGACCAGCACCTCCAACGGTGCAGCAGCAGCAGTGGCAGCGTCCCTTCGGAACTGGAGGATGAACCTGCCTGCTTGGAGGAGATTGATTACAGTACCGACAACAGCTCAGACCAGGAAGGGAGCTTGTCTGAGCTGGACCGGAGGATCCAGGAGTGTGCCTTCAATAAGTTTGAGGGAGAGGAAGAAGAGGAGGCACCAGGGCAGGGAGGAGAAGCCATCCCATAG MAHKQREDYLNLSPCVFTWYRTFSQLAFDGEKLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQAATEVLAALLKSKSNGRRAVNRGYVTSLLGLHQDWHSHDTANAYVQIRRGLLLCLRHIAALRSGREAFLAAQGMEILFSTTQNCLDDKSMEPVISVVLQILRQCYPTSPLPLVTASSAYAFPVPGCITTEPPHDLPEEDFEDDGDDEVDKDSDTEDGKVEDDDLETDVNKLSSKPGLDRPEEELMQYEVMCLELSYSFEELQSKLGDDLNSEKTQYANHHHIPAAASSKQHCYSKDQSSCGQEREYAVQTSLLCRVKTGRSTVHLGSKKNPGVNLYQNVQSNSLRRDSSESEIPDIQASPKADAWDVDAIFCPRMSASFSNSTRTREVVKVIDKLLQTHLKRVPFHDPYLYMAKARRTSSVVDFKMMAFPDVWGHCPPPTTQPMLERKCGVQRIRIFEDIRRLIQPSDVINKVVFSLDEPWPLQDNASNCLRFFSKFESGNLRKAIQVREFEYDLLVNADVNSTQHQQWFYFKVSGMQAAIPYHFNIINCEKPNSQFNYGMQPTLYSVKEALLGKPTWIRTGHEICYYKNHYRQSTAVAGGASGKCYYTLTFAVTFPHSEDVCYLAYHYPYTYTALMTHLDILEKSVNLKEVYFRQDVLCQTLGGNPCPLVTITAMPESNSDEHLEQFRHRPYQVITARVHPGESNASWVMKGTLEFLVSSDPVARLLRENFIFKIIPMLNPDGVINGNHRCSLSGEDLNRQWLSPSAHLQPTIYHAKGLLYHLSSIGRSPVVFCDFHGHSQKKNVFLYGCSIKETLWQAACTVGTSTILEEVNYRTLPKILDKLAPAFTMSSCSFLVEKSRASTARVVVWREMGVSRSYTMESSYCGCNQGPYQGLQFGTRELEEMGAMFCLGLLILELKSASCSHQLLAQAATLLSAEEDALDQHLQRCSSSSGSVPSELEDEPACLEEIDYSTDNSSDQEGSLSELDRRIQECAFNKFEGEEEEEAPGQGGEAIP* FALSE TRUE hsa-mir-3175 chr15:92904399-92904475:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE chromodomain helicase DNA binding protein 2 2 melanoma, large intestine, CLL, monoclonal B lymphocytosis epithelial, leukaemia_lymphoma TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 28950 CASC11::TMEM65 ENSG00000249375.8::ENSG00000164983.9 CORL279 SRR8615423 SRR8639225 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 389 FALSE NA FALSE NA CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733825:- chr8:128698588-128751233:- chr8:128746071:- TMEM65 ENSG00000164983.9 protein_coding - - chr8:124306189-124372701:- chr8:124330792:- chr8:125318430-125384942:- chr8:125343033:- chr8:127728612,chr8:127728612,chr8:127728612,chr8:127728617,chr8:127728623,chr8:127728621,chr8:127728617 chr8:124370401,chr8:124370398,chr8:124370396,chr8:124370403,chr8:124370403,chr8:124370403,chr8:124370402 NA NA chr8:128740858,chr8:128740858,chr8:128740858,chr8:128740863,chr8:128740869,chr8:128740867,chr8:128740863 chr8:125382642,chr8:125382639,chr8:125382637,chr8:125382644,chr8:125382644,chr8:125382644,chr8:125382643 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:3.31Mb] 53 50 53 50 ONLY_REF_SPLICE YES_LDAS 1.3264 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28964 CDKN2A::PTPRD ENSG00000147889.18::ENSG00000153707.19 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDKN2A ENSG00000147889.18 protein_coding - - chr9:21967752-21995301:- chr9:21994139:- chr9:21967751-21995300:- chr9:21994138:- PTPRD ENSG00000153707.19 protein_coding - - chr9:8314246-10613002:- chr9:10341017:- chr9:8314246-10613002:- chr9:10341017:- chr9:21986042,chr9:21986046 chr9:10522248,chr9:10522249 NA NA chr9:21986041,chr9:21986045 chr9:10522248,chr9:10522249 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDKN2A:ArcherDX_panel","CDKN2A:FoundationOne_panel","CDKN2A:Oncogene","CDKN2A:OncomapV4_panel"];["PTPRD:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:11.36Mb] 26 21 26 19.49 ONLY_REF_SPLICE YES_LDAS 0.5075 GT 1.9656 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase inhibitor 2A (p16(INK4a)) gene 1 Yes melanoma, multiple other tumour types melanoma, pancreatic familial malignant melanoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE protein tyrosine phosphatase, receptor type D 2 lung cancer, kidney cancer, HNSCC, glioblastoma epithelial, other TSG large_deletion, nonsense, missense 28965 PVT1::ENSG00000253427 ENSG00000249859.14::ENSG00000253427.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 395 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ ENSG00000253427 ENSG00000253427.1 lncRNA + + chr8:126474189-126492596:+ chr8:126492365:+ chr8:127486434-127504841:+ chr8:127504610:+ chr8:127945985,chr8:127945985,chr8:127945985 chr8:126485547,chr8:126485518,chr8:126485564 NA NA chr8:128958231,chr8:128958231,chr8:128958231 chr8:127497792,chr8:127497763,chr8:127497809 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 25 29 25 15.76 ONLY_REF_SPLICE YES_LDAS 0.4547 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28966 PVT1::LINC02964 ENSG00000249859.14::ENSG00000286122.1 CORL23 SRR8615425 SRR8639223 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 396 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942572:+ chr8:126660571-127021174:+ chr8:126954816:+ chr8:127913031,chr8:127913031,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:128135657,chr8:127913028,chr8:127913028 chr8:125891031,chr8:125891029,chr8:125734079,chr8:125734109,chr8:125734099,chr8:125734092,chr8:125734077,chr8:125734086,chr8:125734078,chr8:125734076,chr8:125734075,chr8:125734074,chr8:125734121,chr8:125734071,chr8:125734089,chr8:125734070,chr8:125734069,chr8:125734068,chr8:125734067,chr8:125734106,chr8:125734098,chr8:125734064,chr8:125734063,chr8:125734062,chr8:125734061,chr8:125734060,chr8:125734059,chr8:125734058,chr8:125734057,chr8:125734056,chr8:125734055,chr8:125734053,chr8:125734052,chr8:125734051,chr8:125734117,chr8:125734123,chr8:125734122,chr8:125734119,chr8:125734113,chr8:125734112,chr8:125734110,chr8:125734107,chr8:125734105,chr8:125734111,chr8:125734102,chr8:125734101,chr8:125734100,chr8:125734097,chr8:125734096,chr8:125734094,chr8:125734103,chr8:125734093,chr8:125734091,chr8:125734090,chr8:125734115,chr8:125734088,chr8:125734087,chr8:125734084,chr8:125734095,chr8:125734083,chr8:125734082,chr8:125734085,chr8:125734081,chr8:125734114,chr8:125734080,chr8:125891023,chr8:125891025 NA NA chr8:128925277,chr8:128925277,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:129147903,chr8:128925274,chr8:128925274 chr8:126903275,chr8:126903273,chr8:126746323,chr8:126746353,chr8:126746343,chr8:126746336,chr8:126746321,chr8:126746330,chr8:126746322,chr8:126746320,chr8:126746319,chr8:126746318,chr8:126746365,chr8:126746315,chr8:126746333,chr8:126746314,chr8:126746313,chr8:126746312,chr8:126746311,chr8:126746350,chr8:126746342,chr8:126746308,chr8:126746307,chr8:126746306,chr8:126746305,chr8:126746304,chr8:126746303,chr8:126746302,chr8:126746301,chr8:126746300,chr8:126746299,chr8:126746297,chr8:126746296,chr8:126746295,chr8:126746361,chr8:126746367,chr8:126746366,chr8:126746363,chr8:126746357,chr8:126746356,chr8:126746354,chr8:126746351,chr8:126746349,chr8:126746355,chr8:126746346,chr8:126746345,chr8:126746344,chr8:126746341,chr8:126746340,chr8:126746338,chr8:126746347,chr8:126746337,chr8:126746335,chr8:126746334,chr8:126746359,chr8:126746332,chr8:126746331,chr8:126746328,chr8:126746339,chr8:126746327,chr8:126746326,chr8:126746329,chr8:126746325,chr8:126746358,chr8:126746324,chr8:126903267,chr8:126903269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 25 21 25 21 ONLY_REF_SPLICE YES_LDAS 0.5132 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28975 ACOT7::NPHP4 ENSG00000097021.21::ENSG00000131697.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 406 FALSE NA FALSE NA ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6281102:- chr1:6324329-6453827:- chr1:6341162:- NPHP4 ENSG00000131697.18 protein_coding - - chr1:5862811-5992473:- chr1:5887466:- chr1:5922871-6052533:- chr1:5947526:- chr1:6268425,chr1:6268431,chr1:6268437 chr1:5888284,chr1:5888287,chr1:5888287 NA NA chr1:6328485,chr1:6328491,chr1:6328497 chr1:5948344,chr1:5948347,chr1:5948347 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame 4HBT|69-149|2.2e-18^TBCC|94-155|0.098^tRNA_anti-codon|119-142|0.49^NLS_NINJA_AFP|185-207|8.8e-06^tRNA_anti-codon|199-213|1.2^4HBT|242-312|4e-21^TBCC|252-321|8.3e-05^tRNA_anti-codon|276-309|1.1e-05^NLS_NINJA_AFP|350-372|0.66 none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.27Mb] 125 87 125 87 ONLY_REF_SPLICE YES_LDAS 3.0435 GT 1.7819 AG 1.6729 ENST00000377855.6 1-1044 ENST00000378156.9 2305-4281 chr1|-|[2]6281102-6281286[1]|[0]6294864-6294980[1]|[0]6318492-6318578[1]|[0]6327299-6327413[0]|[2]6333477-6333568[1]|[0]6339433-6339589[0]|[2]6349749-6349866[2]|[1]6385494-6385666[0]<==>chr1|-|[2]5863265-5863405[0]|[2]5863890-5864033[0]|[2]5864338-5864517[0]|[2]5865102-5865273[2]|[1]5866373-5866458[0]|[2]5867030-5867115[1]|[0]5867740-5867896[0]|[2]5873252-5873335[0]|[2]5874471-5874657[2]|[1]5874874-5875100[0]|[2]5877093-5877298[1]|[0]5880114-5880239[1]|[0]5887286-5887466[0] atgaagctgcttgccagggctctccggctctgtgagtttgggaggcaggcatcttccaggaggctggtggctggccagggatgtgtggggccccggcgagggtgctgcgctcccgtccaggtggttgggcccagggctgatctcccaccctgtggagcctgcattactggaaggatcatgcggccagatgatgccaacgtggccggcaatgtccacggggggaccatcctgaagatgatcgaggaggcaggcgccatcatcagcacccggcattgcaacagccagaacggggagcgctgtgtggccgccctggctcgtgtcgagcgcaccgacttcctgtctcccatgtgcatcggtgaggtggcgcatgtcagcgcggagatcacctacacctccaagcactctgtggaggtgcaggtcaacgtgatgtccgaaaacatcctcacaggtgccaaaaagctgaccaataaggccaccctgtggtatgtgcccctgtcgctgaagaatgtggacaaggtcctcgaggtgcctcctgttgtgtattcccggcaggagcaggaggaggagggccggaagcggtatgaagcccagaagctggagcgcatggagaccaagtggaggaacggggacatcgtccagccagtcctcaacccagagccgaacactgtcagctacagccagtccagcttgatccacctggtggggccttcagactgcaccctgcacggctttgtgcacggaggtgtgaccatgaagctcatggatgaggtcgccgggatcgtggctgcacgccactgcaagaccaacatcgtcacagcttccgtggacgccattaattttcatgacaagatcagaaaaggctgcgtcatcaccatctcgggacgcatgaccttcacgagcaataagtccatggagatcgaggtgttggtggacgccgaccctgttgtggacagctctcagaagcgctaccgggccgccagtgccttcttcacctacgtgtcgctgagccaggaaggcaggtcgctgcctgtgccccagctggtgCATCTCCTCCGCCAAGGCCGGCCGGCTGTGCAGGCCTCCCACGAGCTTGAGGTCGTGGCAACTGAATACGAGCAGGACAACATGGTGGTGAGTGGAGACATGCTGGGGTTTGGCCGCGTCAAGCCCATCGGCGTCCACTCGGTGGTGAAGGGCCGGCTGCACCTGACTTTGGCCAACGTGGGTCACCCGTGTGAACAGAAAGTGAGAGGTTGTAGCACATTGCCACCGTCCAGATCTCGGGTCATCTCAAACGATGGAGCCAGCCGCTTCTCTGGAGGCAGCCTCCTCACGACTGGAAGCTCAAGGCGAAAACACGTGGTGCAAGCACAGAAGCTGGCGGACGTGGACAGTGAGCTGGCTGCCATGCTACTGACCCATGCCCGGCAGGGCAAGGGGCCCCAGGACGTCAGCCGCGAGTCGGATGCCACCCGCAGGCGTAAGCTGGAGCGGATGAGGTCTGTGCGCCTGCAGGAGGCCGGGGGAGACTTGGGCCGGCGCGGGACGAGCGTGTTGGCGCAGCAGAGCGTCCGCACACAGCACTTGCGGGACCTACAGGTCATCGCCGCCTACCGGGAACGCACGAAGGCCGAGAGCATCGCCAGCCTGCTGAGCCTGGCCATCACCACGGAGCACACGCTCCACGCCACGCTGGGGGTCGCCGAGTTCTTTGAGTTTGTGCTTAAGAACCCCCACAACACACAGCACACGGTGACTGTGGAGATCGACAACCCCGAGCTCAGCGTCATCGTGGACAGTCAGGAGTGGAGGGACTTCAAGGGTGCTGCTGGCCTGCACACACCGGTGGAGGAGGACATGTTCCACCTGCGTGGCAGCCTGGCCCCCCAGCTCTACCTGCGCCCCCACGAGACCGCCCACGTCCCCTTCAAGTTCCAGAGCTTCTCTGCAGGGCAGCTGGCCATGGTGCAGGCCTCTCCTGGGTTGAGCAACGAGAAGGGCATGGACGCCGTGTCACCTTGGAAGTCCAGCGCAGTGCCCACTAAACACGCCAAGGTCTTGTTCCGAGCGAGTGGTGGCAAGCCCATCGCCGTGCTCTGCCTGACTGTGGAGCTGCAGCCCCACGTGGTGGACCAGGTCTTCCGCTTCTATCACCCGGAGCTCTCCTTCCTGAAGAAGGCCATCCGCCTGCCGCCCTGGCACACATTTCCAGGTGCTCCGGTGGGAATGCTTGGTGAGGACCCCCCAGTCCATGTTCGCTGCAGCGACCCGAACGTCATCTGTGAGACCCAGAATGTGGGCCCCGGGGAACCACGGGACATATTTCTGAAGGTGGCCAGTGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCATCATTTACTCGGATCGCTGGCTGGCGACACCCACACAGACGTGGCAGGTCTACCTCCACTCCCTGCAGCGCGTGGATGTCTCCTGCGTCGCAGGCCAGCTGACCCGCCTGTCCCTTGTCCTTCGGGGGACACAGACAGTGAGGAAAGTGAGAGCTTTCACCTCTCATCCCCAGGAGCTGAAGACAGACCCCAAAGGTGTCTTCGTGCTGCCGCCTCGTGGGGTGCAGGACCTGCATGTTGGCGTGAGGCCCCTTAGGGCCGGCAGCCGCTTTGTCCATCTCAACCTGGTGGACGTGGATTGCCACCAGCTGGTGGCCTCCTGGCTCGTGTGCCTCTGCTGCCGCCAGCCGCTCATCTCCAAGGCCTTTGAGATCATGTTGGCTGCGGGCGAAGGGAAGGGTGTCAACAAGAGGATCACCTACACCAACCCCTACCCCTCCCGGAGGACATTCCACCTGCACAGCGACCACCCGGAGCTGCTGCGGTTCAGAGAGGACTCCTTCCAGGTCGGGGGTGGAGAGACCTACACCATCGGCTTGCAGTTTGCGCCTAGTCAGAGAGTGGGTGAGGAGGAGATCCTGATCTACATCAATGACCATGAGGACAAAAACGAAGAGGCATTTTGCGTGAAGGTCATCTACCAGTGA MKLLARALRLCEFGRQASSRRLVAGQGCVGPRRGCCAPVQVVGPRADLPPCGACITGRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVNVMSENILTGAKKLTNKATLWYVPLSLKNVDKVLEVPPVVYSRQEQEEEGRKRYEAQKLERMETKWRNGDIVQPVLNPEPNTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDAINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPVPQLVHLLRQGRPAVQASHELEVVATEYEQDNMVVSGDMLGFGRVKPIGVHSVVKGRLHLTLANVGHPCEQKVRGCSTLPPSRSRVISNDGASRFSGGSLLTTGSSRRKHVVQAQKLADVDSELAAMLLTHARQGKGPQDVSRESDATRRRKLERMRSVRLQEAGGDLGRRGTSVLAQQSVRTQHLRDLQVIAAYRERTKAESIASLLSLAITTEHTLHATLGVAEFFEFVLKNPHNTQHTVTVEIDNPELSVIVDSQEWRDFKGAAGLHTPVEEDMFHLRGSLAPQLYLRPHETAHVPFKFQSFSAGQLAMVQASPGLSNEKGMDAVSPWKSSAVPTKHAKVLFRASGGKPIAVLCLTVELQPHVVDQVFRFYHPELSFLKKAIRLPPWHTFPGAPVGMLGEDPPVHVRCSDPNVICETQNVGPGEPRDIFLKVASGPSPEIKDFFVIIYSDRWLATPTQTWQVYLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPKGVFVLPPRGVQDLHVGVRPLRAGSRFVHLNLVDVDCHQLVASWLVCLCCRQPLISKAFEIMLAAGEGKGVNKRITYTNPYPSRRTFHLHSDHPELLRFREDSFQVGGGETYTIGLQFAPSQRVGEEEILIYINDHEDKNEEAFCVKVIYQ* FALSE FALSE NA NA FALSE NA NA TRUE hsa-mir-4689 chr1:5862672-5862741:- FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28976 SGTB::NLN ENSG00000197860.10::ENSG00000123213.23 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 401 FALSE NA FALSE NA SGTB ENSG00000197860.10 protein_coding - - chr5:65665928-65723035:- chr5:65708489:- chr5:64961755-65018862:- chr5:65004316:- NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65781261:+ chr5:65018032-65167553:+ chr5:65077088:+ chr5:65706729,chr5:65706731 chr5:65780689,chr5:65780687 NA NA chr5:65002556,chr5:65002558 chr5:65076516,chr5:65076514 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SGTA_dimer|5-63|9.3e-19^TOM20_plant|17-49|0.66^Wzy_C_2|23-50|6^TPR-S|26-49|1.1^TPR_11|28-49|0.041^TPR_8|28-49|0.016^TPR_19|29-52|0.52^TPR_12|29-54|0.66^TPR_10|29-41|3^TPR_14|30-50|3.1^TPR_9|31-51|0.065^TPR_2|32-49|0.14^TPR_1|35-49|0.52^PPTA|35-51|6.8^BTAD|81-114|0.12^TPR_1|86-118|5.9e-10^TPR_2|88-118|1.5e-09^TPR_16|90-151|3e-08^DUF627|91-148|1.5e-05^TPR_11|92-133|2e-12^TPR_8|92-118|5.8e-07^TPR_12|92-149|8.4e-07^TPR_10|93-113|0.33^T7SS_EccA1_N|94-119|0.99^Wzy_C_2|94-147|0.0009^TPR_7|95-118|0.00025^TPR_9|95-149|6.1e-08^TPR_14|95-127|0.00014^TPR-S|95-123|0.0059^Fis1_TPR_C|95-118|0.16^TPR_19|96-139|1.1e-05^TPR_12|96-114|0.008^TPR_6|96-117|0.017^TPR_15|96-118|0.31^MIT|97-114|0.00038^TOM20_plant|98-122|0.0065^SHNi-TPR|98-114|0.57^Sel1|98-115|0.062^SGTA_dimer|99-118|0.2^NatA_aux_su|99-151|0.0028^TPR-S|100-189|0.0013^ANAPC3|100-178|0.00014^PPTA|103-118|0.019^TPR_17|107-139|1.7e-11^Sel1|115-129|0.02^TPR_15|117-152|0.0068^DUF3856|117-146|0.043^TPR_1|119-152|3.7e-11^MIT|119-140|0.72^TPR_2|120-151|4.3e-08^Fis1_TPR_C|120-150|0.014^TPR_8|121-151|5.9e-07^TPR_12|122-184|4.9e-09^TPR_10|122-148|0.0029^BTAD|124-179|8.7e-05^TPR_14|125-159|0.015^TPR_6|125-146|0.16^DUF3856|126-180|0.0048^T7SS_EccA1_N|126-187|0.00048^Sel1|126-146|0.93^TPR_7|127-148|0.22^TPR_16|128-186|3.9e-08^TPR_11|132-163|1.7e-05^TPR_19|133-190|2.1e-08^SHNi-TPR|135-148|0.012^PPTA|135-152|0.31^TPR_17|142-173|7e-06^TPR_1|154-186|1.6e-12^TPR_2|154-186|5.5e-10^TPR_8|154-186|7.2e-10^TPR_7|155-186|1.1e-06^TPR_10|155-181|6.5e-05^TPR_14|158-188|9.8e-05^TPR_6|158-185|7.1e-05^TPR_11|160-189|5.2e-11^TPR_9|160-186|0.0087^NatA_aux_su|160-193|0.0018^TOM20_plant|162-194|4.5e-05^Fis1_TPR_C|162-187|0.59^MIT|167-182|0.009^SHNi-TPR|168-182|0.00085^TPR_15|169-191|0.038^PPTA|170-186|0.18^TPR_17|176-186|0.031 Peptidase_M3-PARTIAL|~350-596|5.9e-157^Nup35_RRM_2|386-406|2.4e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS_OVERLAP:-:+:[839] 121 123 121 123 ONLY_REF_SPLICE YES_LDAS 3.5029 GT 1.371 AG 1.8062 ENST00000506816.1 1-274 ENST00000502464.5 350-1803 chr5|-|[0]65708489-65708558[0]|[2]65712961-65713064[1]|[0]65720708-65720807[0]<==>chr5|+|[1]65781261-65781421[2]|[0]65785775-65785910[0]|[1]65788118-65788484[1]|[2]65792454-65792655[2]|[0]65809515-65809701[0]|[1]65810037-65810165[0]|[1]65812255-65812391[2]|[0]65822781-65822915[2] atgtcatctatcaagcacctggtttatgcagttattcgtttcttacgggaacaaagtcagatggacacttacacctcggatgaacaagaaagtttggaagttgcaattcagtgcttggagacagtttttaagatcagcccagaagatacacacctagcagtttcacagcctttgacagaaatgtttaccagttccttctgtaagaatgacgttctgcccctttcaaactcagtgcctgaagatgtgggaaaagctgaccaattaaaagatgaagGTGCTCTTCCTGATGATTTCATTGACAGTTTAGAAAAGACAGATGATGACAAGTATAAAATTACCTTAAAATATCCACACTATTTCCCTGTCATGAAGAAATGTTGTATCCCTGAAACCAGAAGAAGGATGGAAATGGCTTTTAATACAAGGTGCAAAGAGGAAAACACCATAATTTTGCAGCAGCTACTCCCACTGCGAACCAAGGTGGCCAAACTACTCGGTTATAGCACACATGCTGACTTCGTCCTTGAAATGAACACTGCAAAGAGCACAAGCCGCGTAACAGCCTTTCTAGATGATTTAAGCCAGAAGTTAAAACCCTTGGGTGAAGCAGAACGAGAGTTTATTTTGAATTTGAAGAAAAAGGAATGCAAAGACAGGGGTTTTGAATATGATGGGAAAATCAATGCCTGGGATCTATATTACTACATGACTCAGACAGAGGAACTCAAGTATTCCATAGACCAAGAGTTCCTCAAGGAATACTTCCCAATTGAGGTGGTCACTGAAGGCTTGCTGAACACCTACCAGGAGTTGTTGGGACTTTCATTTGAACAAATGACAGATGCTCATGTTTGGAACAAGAGTGTTACACTTTATACTGTGAAGGATAAAGCTACAGGAGAAGTATTGGGACAGTTCTATTTGGACCTCTATCCAAGGGAAGGAAAATACAATCATGCGGCCTGCTTCGGTCTCCAGCCTGGCTGCCTTCTGCCTGATGGAAGCCGGATGATGGCAGTGGCTGCCCTCGTGGTGAACTTCTCACAGCCAGTGGCAGGTCGTCCCTCTCTCCTGAGACACGACGAGGTGAGGACTTACTTTCATGAGTTTGGTCACGTGATGCATCAGATTTGTGCACAGACTGATTTTGCACGATTTAGCGGAACAAATGTGGAAACTGACTTTGTAGAGGTGCCATCGCAAATGCTTGAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTCAAAACATTATAAAGATGGAAGCCCTATTGCAGACGATCTGCTTGAAAAACTTGTTGCTTCTAGGCTGGTCAACACAGGTCTTCTGACCCTGCGCCAGATTGTTTTGAGCAAAGTTGATCAGTCTCTTCATACCAACACATCGCTGGATGCTGCAAGTGAATATGCCAAATACTGCTCAGAAATATTAGGAGTTGCAGCTACTCCAGGCACAAATATGCCAGCTACCTTTGGACATTTGGCAGGGGGATACGATGGCCAATATTATGGATATCTTTGGAGTGAAGTATTTTCCATGGATATGTTTTACAGCTGTTTTAAAAAAGAAGGGATAATGAATCCAGAGGTTGGAATGAAATACAGAAACCTAATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGCTCCACAATTTCTTGAAACGTGAGCCAAACCAAAAAGCGTTCCTAATGAGTAGAGGCCTGCATGCTCCGTGA MSSIKHLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCKNDVLPLSNSVPEDVGKADQLKDEGALPDDFIDSLEKTDDDKYKITLKYPHYFPVMKKCCIPETRRRMEMAFNTRCKEENTIILQQLLPLRTKVAKLLGYSTHADFVLEMNTAKSTSRVTAFLDDLSQKLKPLGEAEREFILNLKKKECKDRGFEYDGKINAWDLYYYMTQTEELKYSIDQEFLKEYFPIEVVTEGLLNTYQELLGLSFEQMTDAHVWNKSVTLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSRMMAVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFVEVPSQMLENWVWDVDSLRRLSKHYKDGSPIADDLLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNTSLDAASEYAKYCSEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFYSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLHNFLKREPNQKAFLMSRGLHAP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28977 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 402 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247591:+ chr10:85990422-86019716:+ chr10:86007347:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.07Mb];LOCAL_REARRANGEMENT:+:[68626] 83 149 83 78.57 ONLY_REF_SPLICE YES_LDAS 2.3194 GT 1.6402 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28979 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 404 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247641:+ chr10:85990422-86019716:+ chr10:86007397:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.07Mb];LOCAL_REARRANGEMENT:+:[68626] 61 122 61 35.32 ONLY_REF_SPLICE YES_LDAS 1.3827 GT 1.6402 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28980 PDS5B::UCHL3 ENSG00000083642.19::ENSG00000118939.19 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 413 FALSE NA FALSE NA PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ UCHL3 ENSG00000118939.19 protein_coding + + chr13:75549483-75606020:+ chr13:75594915:+ chr13:76123619-76180156:+ chr13:76169051:+ chr13:32622041,chr13:32622041 chr13:75581550,chr13:75581547 NA NA chr13:33196178,chr13:33196178 chr13:76155686,chr13:76155683 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDS5B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:42.77Mb] 56 0 56 0 ONLY_REF_SPLICE YES_LDAS 0.8039 GT 1.7819 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28981 RERE::SLC25A33 ENSG00000142599.20::ENSG00000171612.7 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 407 TRUE 791 TRUE 285 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- SLC25A33 ENSG00000171612.7 protein_coding + + chr1:9539465-9585173:+ chr1:9553626:+ chr1:9599524-9645231:+ chr1:9613684:+ chr1:8712155,chr1:8712155,chr1:8712155 chr1:9549159,chr1:9549157,chr1:9549127 NA NA chr1:8772214,chr1:8772214,chr1:8772214 chr1:9609217,chr1:9609215,chr1:9609185 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RERE:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.72Mb] 42 8 42 5.33 ONLY_REF_SPLICE YES_LDAS 0.6794 GT 1.8295 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28982 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 405 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84252857:+ chr10:85990422-86019716:+ chr10:86012613:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.07Mb];LOCAL_REARRANGEMENT:+:[68626] 39 33 39 3.88 ONLY_REF_SPLICE YES_LDAS 0.6156 GT 1.6402 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28984 CCSER2::RGR ENSG00000107771.17::ENSG00000148604.15 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 403 TRUE 789 TRUE 283 CCSER2 ENSG00000107771.17 protein_coding + + chr10:84328586-84518521:+ chr10:84328808:+ chr10:86088342-86278277:+ chr10:86088564:+ RGR ENSG00000148604.15 protein_coding + + chr10:84230666-84259960:+ chr10:84247498:+ chr10:85990422-86019716:+ chr10:86007254:+ chr10:84353689,chr10:84353690 chr10:84245395,chr10:84245393 NA NA chr10:86113445,chr10:86113446 chr10:86005151,chr10:86005149 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.07Mb];LOCAL_REARRANGEMENT:+:[68626] 19 163 19 45.24 ONLY_REF_SPLICE YES_LDAS 0.9223 GT 1.6402 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28985 RERE::SLC25A33 ENSG00000142599.20::ENSG00000171612.7 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 408 TRUE 791 TRUE 285 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8792404:- chr1:8412457-8908980:- chr1:8852463:- SLC25A33 ENSG00000171612.7 protein_coding + + chr1:9539465-9585173:+ chr1:9553626:+ chr1:9599524-9645231:+ chr1:9613684:+ chr1:8712155,chr1:8712155,chr1:8712155 chr1:9549159,chr1:9549157,chr1:9549127 NA NA chr1:8772214,chr1:8772214,chr1:8772214 chr1:9609217,chr1:9609215,chr1:9609185 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RERE:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.72Mb] 14 15 14 9.67 ONLY_REF_SPLICE YES_LDAS 0.3398 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 28994 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10567603:- chrX:10413350-10851773:- chrX:10535643:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MID1:Oncogene"] 8 8 8 2.9 ONLY_REF_SPLICE YES_LDAS 0.1564 GT 1.9219 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29003 PRKAA1::EGFLAM ENSG00000132356.12::ENSG00000164318.18 CORL88 SRR8615426 SRR8639221 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 412 FALSE NA FALSE NA PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40769416:- chr5:40759491-40798476:- chr5:40769518:- EGFLAM ENSG00000164318.18 protein_coding + + chr5:38258409-38465480:+ chr5:38409004:+ chr5:38258511-38465582:+ chr5:38409106:+ chr5:40769408,chr5:40769412 chr5:38408573,chr5:38408569 NA NA chr5:40769510,chr5:40769514 chr5:38408675,chr5:38408671 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Kinase-like|27-101|0.43^Pkinase|29-294|2e-76^PK_Tyr_Ser-Thr|29-290|7e-45^ABC1|33-59|0.097^ABC1|71-191|2.5e-06^FTA2|118-186|2.9e-06^Kdo|135-177|5.8e-05^Kinase-like|145-280|6.1e-08^AMPK_alpha_AID|314-359|1.8e-27^AdenylateSensor|421-495|2.3e-16^AMPK_alpha_AID|434-441|0.6 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:2.29Mb] 6 7 6 6.92 ONLY_REF_SPLICE YES_LDAS 0.1854 GT 1.8062 AG 1.6402 ENST00000354209.7 1-641 ENST00000354891.7 1249-3054 chr5|-|[1]40769416-40769503[1]|[0]40771719-40771863[0]|[2]40774928-40774972[0]|[2]40775410-40775503[2]|[1]40777445-40777586[1]|[0]40798063-40798189[0]<==>chr5|+|[0]38409004-38409104[1]|[2]38412504-38412648[2]|[0]38418066-38418255[0]|[1]38424967-38425092[0]|[1]38427009-38427252[1]|[2]38431177-38431288[2]|[0]38435137-38435253[2]|[0]38438275-38438455[0]|[1]38445679-38445702[0]|[1]38448301-38448379[1]|[2]38451315-38451458[1]|[2]38458311-38458394[1]|[2]38462908-38463011[0]|[1]38463832-38463986[2] atgcgcagactcagttcctggagaaagatggcgacagccgagaagcagaaacacgacgggcgggtgaagatcggccactacattctgggtgacacgctgggggtcggcaccttcggcaaagtgaaggttggcaaacatgaattgactgggcataaagtagctgtgaagatactcaatcgacagaagattcggagccttgatgtggtaggaaaaatccgcagagaaattcagaacctcaagcttttcaggcatcctcatataattaaactgtaccaggtcatcagtacaccatctgatattttcatggtgatggaatatgtctcaggaggagagctatttgattatatctgtaagaatggaaggaaatctgatgtacctggagtagtaaaaacaggctccacgaaggagctggatgaaaaagaaagtcggcgtctgttccaacagatcctttctggtgtggattattgtcacaggcatatggtggtccatagagatttgaaacctgaaaatgtcctgcttgatgcacacatgaatgcaaagatagctgattttggtctttcaaacatgatgtcagatggtgaatttttaagaacaagttgtggctcacccaactatgctgcaccagaagtaatttcaggaagGCGGAGGCAGAGGATGGCTTACTGCTCTACTGTGGGGAGAACGAACACGGGAGGGGGGATTTCATGTCCCTGGCTATCATCCGACGCTCCCTGCAGTTCAGGTTTAATTGTGGAACTGGGGTTGCCATCATCGTAAGTGAGACCAAAATCAAACTAGGGGGTTGGCACACGGTTATGCTCTACAGAGATGGGCTGAACGGGCTGCTGCAGCTGAACAATGGCACCCCAGTGACAGGCCAGTCTCAGGGCCAATACAGTAAAATTACTTTCCGGACACCTCTCTATCTTGGTGGCGCTCCCAGCGCTTACTGGTTGGTTAGAGCAACAGGGACAAACCGAGGCTTTCAAGGCTGTGTGCAGTCGCTCGCTGTGAATGGGAGGAGAATTGACATGAGGCCCTGGCCCCTGGGAAAAGCACTCAGTGGGGCTGATGTGGGGGAATGCAGCAGTGGAATCTGTGATGAGGCCTCGTGCATCCATGGTGGCACCTGCACAGCAATCAAAGCCGACTCCTACATTTGCCTCTGTCCCCTTGGGTTTAAAGGTCGACACTGTGAAGATGCTTTCACCTTGACCATTCCTCAGTTCAGAGAGTCTCTGAGATCTTACGCTGCAACTCCCTGGCCACTGGAGCCCCAGCATTACCTTTCCTTCATGGAATTTGAGATCACATTTCGGCCAGACTCAGGAGATGGTGTCCTCCTGTACAGCTATGACACAGGCAGCAAAGACTTCCTGTCCATCAACTTGGCAGGGGGCCACGTGGAGTTCCGCTTTGACTGTGGCTCTGGGACCGGTGTCCTCAGGAGTGAAGATCCCCTCACCCTGGGCAACTGGCACGAGCTTCGTGTATCTCGCACAGCAAAGAATGGAATCTTACAGGTGGATAAGCAGAAGATAGTGGAGGGAATGGCAGAGGGAGGCTTCACACAGATTAAGTGCAACACAGACATTTTCATTGGCGGAGTCCCCAATTATGATGATGTGAAGAAGAACTCGGGTGTCCTGAAGCCTTTCAGCGGGAGCATCCAGAAGATCATCCTGAATGACCGAACCATCCATGTGAAGCATGACTTCACCTCCGGAGTGAATGTGGAGAATGCGGCCCACCCCTGTGTGAGAGCCCCTTGTGCCCATGGGGGCAGCTGCCGGCCCAGGAAGGAGGGCTATGACTGTGACTGCCCCTTGGGCTTTGAGGGGCTTCACTGCCAGAAAGAGTGTGGGAACTACTGCCTCAATACGATCATAGAAGCCATTGAGATCCCGCAGTTTATCGGCCGCAGTTACCTGACGTATGACAACCCAGATATCTTGAAGAGGGTGTCAGGATCAAGATCAAATGTGTTCATGAGGTTTAAAACAACTGCCAAGGATGGCCTTTTGCTGTGGAGGGGAGACAGCCCCATGAGACCCAACAGCGACTTCATTTCCTTGGGCCTTCGGGATGGAGCCCTCGTGTTCAGCTATAACCTGGGCAGTGGTGTGGCATCCATCATGGTGAATGGCTCCTTCAACGATGGTCGGTGGCACCGAGTTAAGGCCGTTAGGGATGGCCAGTCAGGAAAGATAACCGTGGATGACTATGGAGCCAGAACAGGCAAATCCCCAGGCATGATGCGGCAGCTTAACATCAATGGAGCTCTGTATGTGGGTGGAATGAAGGAAATTGCTCTGCACACTAACAGGCAATATATGAGAGGGCTCGTGGGCTGTATCTCTCACTTCACCCTGTCCACCGATTACCACATTTCCCTCGTGGAAGATGCCGTGGATGGGAAAAACATCAACACTTGTGGAGCCAAGTAA MRRLSSWRKMATAEKQKHDGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRKSDVPGVVKTGSTKELDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRRRQRMAYCSTVGRTNTGGGISCPWLSSDAPCSSGLIVELGLPSS*VRPKSN*GVGTRLCSTEMG*TGCCS*TMAPQ*QASLRANTVKLLSGHLSILVALPALTGWLEQQGQTEAFKAVCSRSL*MGGELT*GPGPWEKHSVGLMWGNAAVESVMRPRASMVAPAQQSKPTPTFASVPLGLKVDTVKMLSP*PFLSSESL*DLTLQLPGHWSPSITFPSWNLRSHFGQTQEMVSSCTAMTQAAKTSCPSTWQGATWSSALTVALGPVSSGVKIPSPWATGTSFVYLAQQRMESYRWISRR*WREWQREASHRLSATQTFSLAESPIMMM*RRTRVS*SLSAGASRRSS*MTEPSM*SMTSPPE*MWRMRPTPV*EPLVPMGAAAGPGRRAMTVTAPWALRGFTARKSVGTTASIRS*KPLRSRSLSAAVT*RMTTQIS*RGCQDQDQMCS*GLKQLPRMAFCCGGETAP*DPTATSFPWAFGMEPSCSAITWAVVWHPSW*MAPSTMVGGTELRPLGMASQER*PWMTMEPEQANPQA*CGSLTSMELCMWVE*RKLLCTLTGNI*EGSWAVSLTSPCPPITTFPSWKMPWMGKTSTLVEPS FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29014 CRYBG1::PDSS2 ENSG00000112297.18::ENSG00000164494.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 417 FALSE NA FALSE NA CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106361081:+ chr6:106808592-107019892:+ chr6:106808956:+ PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107193854:- chr6:107473766-107780768:- chr6:107515058:- chr6:106398915,chr6:106398907,chr6:106398928,chr6:106398929,chr6:106456339 chr6:107196567,chr6:107196567,chr6:107196567,chr6:107196567,chr6:107265783 NA NA chr6:106846790,chr6:106846782,chr6:106846803,chr6:106846804,chr6:106904214 chr6:107517771,chr6:107517771,chr6:107517771,chr6:107517771,chr6:107586987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 699 815 699 815 ONLY_REF_SPLICE YES_LDAS 19.6623 GT 1.7465 AG 1.6402 ENST00000633556.3 1-173 ENST00000369037.9 1009-1200 chr6|+|[0]106360909-106361081[1]<==>chr6|-|[2]107154619-107154777[0]|[2]107193822-107193854[0] atgccgctgtccccgccagcccagggcgaccccggggagcccagcccgtgcaggccccctaagaagcacaccaccttccacctctggcgctccaaaaagaagcagcagccggcgccgcctgactgtggggtgttcgttccgcacccgctcccggcgcctgccggagaggccagGCTCAAGAAAAAGGAAGATTGGACTATGCTAAGTTGCGAGAAAGAATCAAAGCTGGCAAAGGTGTGACTTCAGCTATTGACCTGTGTCGTTACCATGGAAACAAGGCACTGGAGGCCCTGGAGAGCTTTCCTCCCTCGGAGGCCAGATCTGCTTTAGAAAACATTGTGTTTGCTGTGACCAGATTTTCATGA MPLSPPAQGDPGEPSPCRPPKKHTTFHLWRSKKKQQPAPPDCGVFVPHPLPAPAGEARLKKKEDWTMLSCEKESKLAKV*LQLLTCVVTMETRHWRPWRAFLPRRPDLL*KTLCLL*PDFH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 106451832 FALSE 107193854 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29015 PVT1::ATG5 ENSG00000249859.14::ENSG00000057663.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 420 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ATG5 ENSG00000057663.16 protein_coding - - chr6:106045423-106325791:- chr6:106202089:- chr6:106493298-106773666:- chr6:106649964:- chr8:128169345,chr8:128169346,chr8:128169333,chr8:128169347,chr8:128169343,chr8:128169348,chr8:128169349,chr8:128169350,chr8:128169351,chr8:128169352,chr8:128169353,chr8:128169354,chr8:128169355,chr8:128169336,chr8:128169358,chr8:128169359,chr8:128169360,chr8:128169361,chr8:128169362,chr8:128169363,chr8:128169364,chr8:128169366,chr8:128169335,chr8:128169295,chr8:128169297,chr8:128169299,chr8:128169300,chr8:128169301,chr8:128169303,chr8:128169304,chr8:128169306,chr8:128169307,chr8:128169308,chr8:128169309,chr8:128169310,chr8:128169312,chr8:128169315,chr8:128169314,chr8:128169316,chr8:128169317,chr8:128169319,chr8:128169320,chr8:128169306,chr8:128169321,chr8:128169323,chr8:128169324,chr8:128169325,chr8:128169327,chr8:128169328,chr8:128169329,chr8:128169331,chr8:128169332,chr8:128169337,chr8:128169338,chr8:128169339,chr8:128169322,chr8:128169340,chr8:128169326,chr8:128169342,chr8:128169341,chr8:128169302,chr8:127854775,chr8:127854777 chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269343,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269330,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106269345,chr6:106207314,chr6:106207313 NA NA chr8:129181591,chr8:129181592,chr8:129181579,chr8:129181593,chr8:129181589,chr8:129181594,chr8:129181595,chr8:129181596,chr8:129181597,chr8:129181598,chr8:129181599,chr8:129181600,chr8:129181601,chr8:129181582,chr8:129181604,chr8:129181605,chr8:129181606,chr8:129181607,chr8:129181608,chr8:129181609,chr8:129181610,chr8:129181612,chr8:129181581,chr8:129181541,chr8:129181543,chr8:129181545,chr8:129181546,chr8:129181547,chr8:129181549,chr8:129181550,chr8:129181552,chr8:129181553,chr8:129181554,chr8:129181555,chr8:129181556,chr8:129181558,chr8:129181561,chr8:129181560,chr8:129181562,chr8:129181563,chr8:129181565,chr8:129181566,chr8:129181552,chr8:129181567,chr8:129181569,chr8:129181570,chr8:129181571,chr8:129181573,chr8:129181574,chr8:129181575,chr8:129181577,chr8:129181578,chr8:129181583,chr8:129181584,chr8:129181585,chr8:129181568,chr8:129181586,chr8:129181572,chr8:129181588,chr8:129181587,chr8:129181548,chr8:128867021,chr8:128867023 chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717218,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717205,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106717220,chr6:106655189,chr6:106655188 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr6] 276 295 276 295 ONLY_REF_SPLICE YES_LDAS 7.4156 GT 1.8295 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29017 PVT1::CRYBG1 ENSG00000249859.14::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 424 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr8:127846747,chr8:127854846,chr8:127840574,chr8:127840576 chr6:106393752,chr6:106423929,chr6:106433728,chr6:106433759 NA NA chr8:128858993,chr8:128867092,chr8:128852820,chr8:128852822 chr6:106841627,chr6:106871804,chr6:106881603,chr6:106881634 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["CCLE_StarF2019"] 100 131 100 131 ONLY_REF_SPLICE YES_LDAS 3 GT 1.8295 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29018 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 418 TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame polyprenyl_synt-PARTIAL|110-296~|2e-20 Ricin_B_lectin|219-234|1^Crystall|1431-1500|1.6e-14^IL4_i_Ig|1460-1491|0.0016^Inhibitor_I36|1474-1484|0.56^Crystall|1533-1612|6.2e-23^IL4_i_Ig|1572-1593|0.0021^Crystall|1627-1720|2.3e-28^IL4_i_Ig|1628-1649|0.017^IL4_i_Ig|1679-1700|0.0025^Inhibitor_I36|1683-1701|0.72^Crystall|1729-1811|4.7e-26^IL4_i_Ig|1769-1789|0.0048^Inhibitor_I36|1774-1789|0.14^Crystall|1824-1903|4.2e-24^Inhibitor_I36|1827-1874|0.00087^IL4_i_Ig|1862-1881|0.053^Crystall|1912-1990|2.5e-26^IL4_i_Ig|1913-1931|1.9^Inhibitor_I36|1914-1964|9.5e-05^IL4_i_Ig|1952-1977|0.0057^Ricin_B_lectin|1997-2124|5.2e-12^RicinB_lectin_2|1997-2038|0.0041^RicinB_lectin_2|2052-2111|0.00017 ["CCLE_StarF2019"] 98 133 98 121.47 ONLY_REF_SPLICE YES_LDAS 2.8502 GT 1.8892 AG 1.7819 ENST00000369037.9 1-296 ENST00000633556.3 174-6396 chr6|-|[1]107458990-107459285[0]<==>chr6|+|[2]106451694-106451832[2]|[0]106511430-106513039[1]|[2]106519131-106521453[2]|[0]106525133-106525180[2]|[0]106525268-106525386[1]|[2]106527305-106527470[2]|[0]106530176-106530315[1]|[2]106539403-106539529[2]|[0]106541586-106541621[2]|[0]106543440-106543597[1]|[2]106544571-106544697[2]|[0]106544788-106544933[1]|[2]106551852-106551978[2]|[0]106552184-106552216[2]|[0]106553455-106553567[1]|[2]106555768-106555897[2]|[0]106558486-106558625[1]|[2]106560803-106560926[2]|[0]106561342-106561500[2]|[0]106563764-106563926[0]|[1]106568472-106568566[2] atgaactttcggcagctgctgttgcacttgccacgttatcttggagcctcgggttccccgcgtcgcctgtggtggtccccgtccctcgacaccatctcctcggtgggctcttggcgtggtcggtcctccaagtccccggcccactggaatcaggtagtgtcagaggcggagaagatcgtggggtaccccacgtccttcatgagccttcgctgcctgctgagcgacgagctcagcaacatcgctatgcaggtgcggaagctggtgggcactcagcaccctctgcttaccacagccagAGCTTTGGATGTAGTCGATGGAAAATATGTGGTTCGAGACTCCCAGGAATTTCCACTGCACTGTGGGGAATCCCAGTTCTTCCACACCACCAGTGAGGCGCTTGGTTCCTTACTTCTAGAGTCTGGAATATTTAAAAAGTCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAGAAACAGTAGAAACGGGTTAGAGAGTCCCACCAGATCAAATGCCAAACCACTCTCTCCCAAAGATGTGGTAGCCTCTCCTAAGCTCCCAGAGAGAGAGAGTGAGAGGAGCAGATCTCAGAGCAGCCAACTGAAGCAAACGGACACAAGCGAGGAGGGCTCCCCGCGGGAGAATCCCCGAGAGGCAGAGGGCGAGCTCCCCGAGAGCGGTGGCCCCGCAGCCCCCCCTGACGCCGAGCTGTCACCTCGCTGGAGCAGCAGTGCAGCGGCTGTGGCTGTGCAGCAGTGCCATGAAAATGATTCACCCCAATTAGAACCTCTGGAGGCAGAGGGAGAGCCTTTCCCAGATGCCACCACCACTGCCAAGCAGCTGCATTCCTCGCCGGGAAATTCCTCCAGGCAAGAGAACGCAGAGACGCCCGCCCGCAGTCCGGGGGAGGACGCTTCACCAGGTGCTGGCCACGAACAGGAGGCTTTCCTGGGTGTGAGGGGTGCGCCAGGGTCGCCCACCCAGGAGCGGCCCGCGGGAGGACTAGGCGAGGCCCCTAACGGAGCCCCCAGTGTGTGTGCCGAAGAAGGCTCCCTGGGGCCCCGCAACGCCCGCAGCCAGCCCCCCAAGGGCGCGTCTGATTTGCCAGGTGAGCCTCCGGCCGAGGGCGCAGCGCACACGGCCAGCTCCGCGCAGGCAGACTGCACAGCCCGCCCCAAGGGTCACGCCCACCCTGCTAAGGTGCTAACTTTGGACATCTACTTGAGTAAGACTGAGGGGGCACAAGTGGACGAGCCGGTCGTGATTACTCCCAGAGCGGAAGATTGCGGTGACTGGGACGACATGGAGAAGAGGTCCAGCGGCCGTAGGTCGGGGAGGCGGAGGGGGTCGCAGAAATCCACCGACTCCCCCGGCGCGGACGCCGAGCTCCCTGAGAGCGCTGCCAGGGACGACGCGGTGTTCGACGACGAGGTGGCGCCAAACGCGGCCAGCGATAACGCCTCGGCGGAAAAGAAAGTGAAATCTCCGCGGGCAGCCCTCGACGGGGGCGTTGCCTCCGCTGCGAGCCCAGAGTCCAAGCCCAGCCCCGGTACCAAAGGGCAGCTCCGAGGGGAGTCGGACCGGAGCAAACAGCCACCCCCGGCTTCGTCCCCCACGAAGAGGAAGGGCAGGAGCCGTGCCCTCGAGGCCGTGCCCGCCCCGCCCGCCAGCGGCCCCCGGGCTCCCGCCAAGGAGTCCCCACCCAAGAGGGTGCCCGATCCCAGCCCAGTCACCAAGGGCACTGCGGCCGAGAGCGGGGAGGAGGCGGCGCGGGCCATCCCCCGCGAGCTCCCGGTCAAGAGCAGCTCGCTGCTGCCGGAGATCAAGCCCGAGCACAAGAGGGGCCCGCTCCCCAACCACTTCAACGGCCGGGCAGAGGGAGGTCGAAGCAGAGAGCTGGGCAGAGCGGCCGGAGCGCCTGGAGCTTCTGACGCCGACGGCTTGAAGCCCAGGAACCATTTCGGCGTGGGCAGGTCGACAGTGACCACTAAAGTGACCCTCCCTGCCAAGCCCAAACATGTGGAACTAAATCTTAAAACCCCTAAGAATCTTGACAGTTTGGGAAATGAGCACAATCCATTTAGCCAGCCAGTTCACAAAGGCAACACTGCCACCAAAATCTCCTTATTTGAAAACAAACGGACAAACAGTAGCCCAAGACACACTGACATTCGAGGCCAAAGGAATACTCCTGCCTCTAGTAAAACGTTTGTTGGGAGGGCAAAGCTGAATTTAGCCAAAAAAGCCAAAGAAATGGAGCAACCTGAAAAGAAAGTAATGCCAAACAGTCCCCAGAATGGTGTGCTGGTTAAGGAAACTGCTATAGAAACCAAAGTTACCGTCTCGGAAGAAGAGATTCTGCCAGCAACCAGAGGAATGAATGGAGACTCTTCTGAGAATCAAGCTCTTGGTCCTCAGCCTAACCAAGATGATAAAGCAGATGTACAAACAGATGCTGGCTGCCTTTCAGAACCAGTGGCTTCTGCTCTGATTCCTGTCAAGGATCATAAGCTCTTAGAGAAGGAGGACTCAGAGGCTGCAGACAGCAAAAGCCTTGTACTTGAAAATGTAACCGATACAGCACAAGACATCCCCACCACTGTGGATACCAAAGATTTACCTCCAACGGCCATGCCAAAGCCACAGCATACATTTTCTGACTCACAGTCCCCTGCTGAGTCATCTCCTGGGCCTTCTCTTTCACTGTCTGCACCCGCTCCTGGGGATGTTCCCAAAGACACATGTGTTCAATCACCCATAAGCAGTTTCCCATGCACTGATCTAAAAGTGTCAGAAAACCATAAAGGATGTGTTTTGCCTGTGTCTCGTCAGAACAATGAGAAAATGCCACTTTTAGAACTTGGAGGAGAAACAACCCCTCCTTTGTCCACAGAGCGTAGTCCAGAAGCTGTGGGAAGTGAGTGTCCATCCAGAGTCCTCGTCCAGGTCAGGTCCTTCGTGCTCCCCGTGGAGAGCACCCAGGATGTGAGCTCCCAGGTCATCCCAGAGAGCTCTGAAGTTAGAGAAGTGCAGTTGCCAACTTGTCACAGTAATGAACCTGAAGTGGTTTCCGTTGCAAGTTGTGCTCCCCCACAAGAGGAAGTACTGGGCAATGAACACTCTCATTGCACAGCAGAGCTCGCGGCAAAATCTGGCCCACAAGTCATACCGCCAGCATCAGAGAAAACTCTGCCTATTCAGGCTCAAAGTCAGGGCAGCAGAACACCCCTGATGGCTGAATCCAGTCCCACCAACTCTCCCAGCAGCGGAAATCACTTAGCCACTCCTCAAAGGCCAGATCAGACTGTTACAAATGGCCAGGATAGCCCTGCCAGCCTTTTGAACATTTCTGCTGGTAGTGATGATAGTGTATTTGATTCTTCTTCTGATATGGAAAAATTCACTGAAATTATAAAACAGATGGATAGCGCAGTTTGTATGCCCATGAAAAGAAAGAAGGCCAGGATGCCAAACTCTCCTGCTCCTCACTTTGCCATGCCTCCTATTCACGAAGACCATTTAGAAAAGGTGTTTGATCCCAAAGTGTTTACCTTTGGTTTGGGGAAGAAGAAGGAAAGTCAGCCAGAAATGTCACCGGCTTTACATTTGATGCAGAACCTTGACACAAAATCCAAACTGAGACCCAAACGTGCATCTGCTGAACAGAGCGTCCTCTTCAAGTCCCTGCACACCAACACTAATGGGAACAGTGAGCCTCTGGTGATGCCGGAAATCAATGACAAAGAGAACAGGGACGTCACAAATGGTGGCATTAAGAGATCGAGACTAGAAAAAAGTGCACTTTTCTCAAGCTTGTTATCTTCTTTACCACAAGACAAAATCTTTTCTCCTTCTGTGACATCAGTCAACACTATGACCACGGCTTTCAGTACTTCTCAGAACGGTTCCCTATCTCAGTCTTCAGTGTCACAGCCCACGACTGAGGGTGCCCCGCCCTGTGGTTTGAACAAAGAACAGTCAAATCTTCTGCCCGACAACTCCTTAAAGGTCTTCAATTTCAACTCGTCAAGTACATCACACTCCAGTTTGAAAAGTCCAAGCCACATGGAAAAATACCCGCAAAAAGAGAAAACCAAAGAAGATCTGGATTCACGAAGCAACCTACACTTGCCAGAAACTAAATTTTCTGAATTGTCAAAACTGAAGAATGATGATATGGAAAAGGCTAATCATATTGAAAGTGTTATTAAATCAAACTTGCCAAACTGTGCAAACAGTGACACCGACTTCATGGGTCTTTTCAAATCAAGCCGGTATGACCCAAGCATTTCTTTTTCTGGAATGTCATTATCAGACACAATGACACTTAGAGGAAGTGTCCAAAATAAACTCAATCCCCGACCTGGAAAGGTAGTGATATATAGTGAACCCGACGTCTCTGAGAAGTGCATTGAAGTTTTCAGTGACATTCAGGATTGCAGTTCTTGGAGCCTCTCTCCAGTGATACTCATAAAAGTTGTTAGAGGATGTTGGATTTTGTATGAGCAACCAAATTTTGAAGGGCACTCCATCCCCTTAGAAGAAGGAGAATTGGAACTCTCTGGTCTCTGGGGTATAGAAGACATTTTGGAAAGGCACGAAGAAGCAGAGTCTGATAAGCCAGTGGTGATTGGTTCCATCAGACATGTGGTTCAGGATTACAGAGTTAGTCACATTGACTTATTTACTGAACCAGAAGGGTTAGGAATCCTAAGTTCCTACTTTGATGATACTGAAGAAATGCAGGGATTTGGTGTAATGCAGAAGACTTGTTCCATGAAAGTACATTGGGGCACGTGGCTGATTTATGAAGAACCTGGATTTCAGGGTGTTCCTTTCATCCTGGAACCTGGTGAATACCCTGACTTGTCCTTCTGGGATACAGAAGAAGCGTACATTGGATCCATGCGGCCTCTGAAAATGGGTGGCCGTAAAGTTGAATTCCCTACAGATCCAAAGGTAGTTGTTTATGAAAAGCCTTTCTTTGAAGGAAAATGTGTGGAACTAGAAACAGGAATGTGTAGTTTTGTCATGGAGGGAGGTGAAACAGAAGAGGCGACTGGAGACGATCATTTGCCGTTTACGTCAGTGGGGTCTATGAAAGTTCTAAGAGGCATTTGGGTTGCATATGAGAAACCTGGATTTACCGGTCATCAGTATTTGCTAGAAGAAGGAGAATACAGGGACTGGAAAGCCTGGGGAGGTTACAATGGAGAGCTTCAGTCTTTACGACCTATATTAGGTGATTTTTCAAATGCTCACATGATAATGTACAGTGAAAAAAACTTTGGATCCAAAGGTTCCAGTATTGATGTATTGGGAATTGTTGCTAATTTAAAGGAGACTGGATATGGAGTGAAGACACAGTCTATTAATGTACTGAGTGGAGTATGGGTAGCCTATGAAAATCCTGACTTCACAGGAGAACAGTATATACTGGATAAAGGATTTTATACCAGTTTTGAGGACTGGGGAGGCAAAAATTGTAAGATCTCTTCTGTTCAACCTATATGTTTGGATTCTTTCACTGGCCCAAGGAGACGAAATCAGATTCACTTGTTTTCAGAACCACAGTTTCAAGGTCACAGTCAAAGTTTTGAAGAAACAACAAGTCAAATTGATGATTCATTTTCTACCAAGTCTTGCAGAGTTTCAGGAGGCAGCTGGGTTGTATATGATGGAGAAAATTTCACTGGTAATCAATACGTGTTGGAAGAAGGCCATTATCCTTGTCTGTCTGCAATGGGATGCCCGCCTGGAGCAACTTTCAAGTCTCTTCGTTTTATAGATGTTGAATTTTCTGAACCAACAATTATTCTCTTTGAAAGAGAAGACTTCAAAGGAAAAAAGATTGAACTTAATGCAGAAACTGTCAATCTCCGATCCCTGGGATTCAACACACAAATACGCTCTGTTCAGGTTATTGGTGGCATATGGGTTACTTATGAATATGGCAGTTACAGAGGGCGACAGTTCCTATTGTCACCTGCAGAAGTACCTAATTGGTATGAATTCAGTGGCTGTCGCCAAATAGGTTCTCTACGACCTTTTGTTCAGAAGCGAATTTATTTCAGACTTCGAAACAAAGCAACAGGGTTATTCATGTCAACCAATGGAAACTTAGAGGATCTGAAGCTTCTGAGGATACAGGTCATGGAGGATGTCGGGGCCGATGATCAGATTTGGATCTATCAAGAAGGATGTATCAAATGCAGGATAGCAGAAGACTGCTGCCTGACGATTGTGGGCAGCCTGGTAACATCTGGCTCCAAGCTAGGCCTGGCCCTGGACCAGAATGCTGACAGCCAGTTCTGGAGCTTGAAGTCCGATGGCAGGATTTACAGCAAGTTGAAGCCAAATTTAGTTTTAGACATTAAAGGGGGCACACAGTATGATCAAAATCACATTATCCTCAACACTGTCAGCAAAGAGAAGTTTACACAAGTGTGGGAAGCCATGGTCCTATATACCTGA MNFRQLLLHLPRYLGASGSPRRLWWSPSLDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARALDVVDGKYVVRDSQEFPLHCGESQFFHTTSEALGSLLLESGIFKKSRAQPPEDNRRKPVLGKLGTLFTAGRRRNSRNGLESPTRSNAKPLSPKDVVASPKLPERESERSRSQSSQLKQTDTSEEGSPRENPREAEGELPESGGPAAPPDAELSPRWSSSAAAVAVQQCHENDSPQLEPLEAEGEPFPDATTTAKQLHSSPGNSSRQENAETPARSPGEDASPGAGHEQEAFLGVRGAPGSPTQERPAGGLGEAPNGAPSVCAEEGSLGPRNARSQPPKGASDLPGEPPAEGAAHTASSAQADCTARPKGHAHPAKVLTLDIYLSKTEGAQVDEPVVITPRAEDCGDWDDMEKRSSGRRSGRRRGSQKSTDSPGADAELPESAARDDAVFDDEVAPNAASDNASAEKKVKSPRAALDGGVASAASPESKPSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALEAVPAPPASGPRAPAKESPPKRVPDPSPVTKGTAAESGEEAARAIPRELPVKSSSLLPEIKPEHKRGPLPNHFNGRAEGGRSRELGRAAGAPGASDADGLKPRNHFGVGRSTVTTKVTLPAKPKHVELNLKTPKNLDSLGNEHNPFSQPVHKGNTATKISLFENKRTNSSPRHTDIRGQRNTPASSKTFVGRAKLNLAKKAKEMEQPEKKVMPNSPQNGVLVKETAIETKVTVSEEEILPATRGMNGDSSENQALGPQPNQDDKADVQTDAGCLSEPVASALIPVKDHKLLEKEDSEAADSKSLVLENVTDTAQDIPTTVDTKDLPPTAMPKPQHTFSDSQSPAESSPGPSLSLSAPAPGDVPKDTCVQSPISSFPCTDLKVSENHKGCVLPVSRQNNEKMPLLELGGETTPPLSTERSPEAVGSECPSRVLVQVRSFVLPVESTQDVSSQVIPESSEVREVQLPTCHSNEPEVVSVASCAPPQEEVLGNEHSHCTAELAAKSGPQVIPPASEKTLPIQAQSQGSRTPLMAESSPTNSPSSGNHLATPQRPDQTVTNGQDSPASLLNISAGSDDSVFDSSSDMEKFTEIIKQMDSAVCMPMKRKKARMPNSPAPHFAMPPIHEDHLEKVFDPKVFTFGLGKKKESQPEMSPALHLMQNLDTKSKLRPKRASAEQSVLFKSLHTNTNGNSEPLVMPEINDKENRDVTNGGIKRSRLEKSALFSSLLSSLPQDKIFSPSVTSVNTMTTAFSTSQNGSLSQSSVSQPTTEGAPPCGLNKEQSNLLPDNSLKVFNFNSSSTSHSSLKSPSHMEKYPQKEKTKEDLDSRSNLHLPETKFSELSKLKNDDMEKANHIESVIKSNLPNCANSDTDFMGLFKSSRYDPSISFSGMSLSDTMTLRGSVQNKLNPRPGKVVIYSEPDVSEKCIEVFSDIQDCSSWSLSPVILIKVVRGCWILYEQPNFEGHSIPLEEGELELSGLWGIEDILERHEEAESDKPVVIGSIRHVVQDYRVSHIDLFTEPEGLGILSSYFDDTEEMQGFGVMQKTCSMKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTEEAYIGSMRPLKMGGRKVEFPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGDDHLPFTSVGSMKVLRGIWVAYEKPGFTGHQYLLEEGEYRDWKAWGGYNGELQSLRPILGDFSNAHMIMYSEKNFGSKGSSIDVLGIVANLKETGYGVKTQSINVLSGVWVAYENPDFTGEQYILDKGFYTSFEDWGGKNCKISSVQPICLDSFTGPRRRNQIHLFSEPQFQGHSQSFEETTSQIDDSFSTKSCRVSGGSWVVYDGENFTGNQYVLEEGHYPCLSAMGCPPGATFKSLRFIDVEFSEPTIILFEREDFKGKKIELNAETVNLRSLGFNTQIRSVQVIGGIWVTYEYGSYRGRQFLLSPAEVPNWYEFSGCRQIGSLRPFVQKRIYFRLRNKATGLFMSTNGNLEDLKLLRIQVMEDVGADDQIWIYQEGCIKCRIAEDCCLTIVGSLVTSGSKLGLALDQNADSQFWSLKSDGRIYSKLKPNLVLDIKGGTQYDQNHIILNTVSKEKFTQVWEAMVLYT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29019 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 422 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113803281:- chr11:113668596-113746294:- chr11:113674003:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame V-set-PARTIAL|15-52~|3e-08^I-set-PARTIAL|22-52~|1.2e-19^Ig_2-PARTIAL|24-52~|9e-10^C2-set_2-PARTIAL|24-52~|0.29^ig-PARTIAL|25-52~|2.3e-11^Ig_3-PARTIAL|26-52~|6.5e-13^C1-set-PARTIAL|30-52~|0.037^Ig_6-PARTIAL|43-52~|0.0021^Adeno_E3_CR1-PARTIAL|44-52~|0.0081^Collagen_bind_2-PARTIAL|48-52~|1.1^Pur_ac_phosph_N-PARTIAL|51-52~|3.3 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.52Mb] 91 153 91 64.48 ONLY_REF_SPLICE YES_LDAS 2.0192 GT 1.9656 AG 1.9329 ENST00000621128.4 1-52 ENST00000696973.1 2925-3420 chr11|+|[0]112961613-112961664[0]<==>chr11|-|[2]113799240-113799415[1]|[0]113801483-113801678[0]|[2]113803158-113803281[2] atgctgcaaactaaggatctcatctggactttgtttttcctgggaactgcagGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACTATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAA MLQTKDLIWTLFFLGTAGTKRHFPTWYMPTRAMLPC**RGPAGGSKNP*LLYTEENAFWS*MPKQLLFLKQMMITP*LRALM**MN*SSPAFTLSLIMTFPRMIWMPLRS*ETIGALTLGKILQKICSCA*GSFYPDF*ILLQKSSS*KSLQLFDPILPMTYVADLQLSWSQFREFQL*Q*N FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29020 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 421 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113803877:- chr11:113668596-113746294:- chr11:113674599:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame V-set-PARTIAL|15-52~|3e-08^I-set-PARTIAL|22-52~|1.2e-19^Ig_2-PARTIAL|24-52~|9e-10^C2-set_2-PARTIAL|24-52~|0.29^ig-PARTIAL|25-52~|2.3e-11^Ig_3-PARTIAL|26-52~|6.5e-13^C1-set-PARTIAL|30-52~|0.037^Ig_6-PARTIAL|43-52~|0.0021^Adeno_E3_CR1-PARTIAL|44-52~|0.0081^Collagen_bind_2-PARTIAL|48-52~|1.1^Pur_ac_phosph_N-PARTIAL|51-52~|3.3 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.52Mb] 80 190 80 119.9 ONLY_REF_SPLICE YES_LDAS 2.5961 GT 1.9656 AG 1.7819 ENST00000621128.4 1-52 ENST00000696973.1 2845-3420 chr11|+|[0]112961613-112961664[0]<==>chr11|-|[2]113799240-113799415[1]|[0]113801483-113801678[0]|[2]113803158-113803281[2]|[1]113803798-113803877[0] atgctgcaaactaaggatctcatctggactttgtttttcctgggaactgcagAAGTGGCATGAAGATTATAGTTTGTTCCGAAAAGTGTCTGTGTATCTCCTAACAGGCCTAGAACTCTATCAAAAAGGAAAGTACCAAGAGGCACTTTCCTACCTGGTATATGCCTACCAGAGCAATGCTGCCCTGCTGATGAAGGGGCCCCGCCGGGGGGTCAAAGAATCCGTGATTGCTTTATACCGAAGAAAATGCCTTCTGGAGCTGAATGCCAAAGCAGCTTCTCTTTTTGAAACAAATGATGATCACTCCGTAACTGAGGGCATTAATGTGATGAATGAACTGATCATCCCCTGCATTCACCTTATCATTAATAATGACATTTCCAAGGATGATCTGGATGCCATTGAGGTCATGAGAAACCATTGGTGCTCTTACCTTGGGCAAGATATTGCAGAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACTATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAA MLQTKDLIWTLFFLGTAEVA*RL*FVPKSVCVSPNRPRTLSKRKVPRGTFLPGICLPEQCCPADEGAPPGGQRIRDCFIPKKMPSGAECQSSFSF*NK**SLRN*GH*CDE*TDHPLHSPYH***HFQG*SGCH*GHEKPLVLLPWARYCRKSAAVPRGVSTQTSRSFCRNHRLERASNYSTQFSL*PM*PICSCHGVNSGSFNCDSEI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29021 NCAM1::USP28 ENSG00000149294.18::ENSG00000048028.12 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 423 TRUE 816 TRUE 295 NCAM1 ENSG00000149294.18 protein_coding + + chr11:112961275-113278436:+ chr11:112961664:+ chr11:112831997-113149158:+ chr11:112832386:+ USP28 ENSG00000048028.12 protein_coding - - chr11:113797874-113875572:- chr11:113799415:- chr11:113668596-113746294:- chr11:113670137:- chr11:112983993,chr11:112983994 chr11:113804078,chr11:113804057 NA NA chr11:112854715,chr11:112854716 chr11:113674800,chr11:113674779 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame V-set-PARTIAL|15-52~|3e-08^I-set-PARTIAL|22-52~|1.2e-19^Ig_2-PARTIAL|24-52~|9e-10^C2-set_2-PARTIAL|24-52~|0.29^ig-PARTIAL|25-52~|2.3e-11^Ig_3-PARTIAL|26-52~|6.5e-13^C1-set-PARTIAL|30-52~|0.037^Ig_6-PARTIAL|43-52~|0.0021^Adeno_E3_CR1-PARTIAL|44-52~|0.0081^Collagen_bind_2-PARTIAL|48-52~|1.1^Pur_ac_phosph_N-PARTIAL|51-52~|3.3 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.52Mb] 58 37 58 5.62 ONLY_REF_SPLICE YES_LDAS 0.8262 GT 1.9656 AG 1.9656 ENST00000621128.4 1-52 ENST00000696973.1 3245-3420 chr11|+|[0]112961613-112961664[0]<==>chr11|-|[2]113799240-113799415[1] atgctgcaaactaaggatctcatctggactttgtttttcctgggaactgcagAAAATCTGCAGCTGTGCCTAGGGGAGTTTCTACCCAGACTTCTAGATCCTTCTGCAGAAATCATCGTCTTGAAAGAGCCTCCAACTATTCGACCCAATTCTCCCTATGACCTATGTAGCCGATTTGCAGCTGTCATGGAGTCAATTCAGGGAGTTTCAACTGTGACAGTGAAATAA MLQTKDLIWTLFFLGTAENLQLCLGEFLPRLLDPSAEIIVLKEPPTIRPNSPYDLCSRFAAVMESIQGVSTVTVK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29022 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107459368:- chr6:107473766-107780768:- chr6:107780572:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106451694:+ chr6:106808592-107019892:+ chr6:106899569:+ chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 55 40 55 8.9 INCL_NON_REF_SPLICE YES_LDAS 0.8299 GT 1.5546 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29023 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 425 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113360008:+ chr11:113185301-113254266:+ chr11:113230730:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exo70_N|4-62|0.00028^HEAT_2|20-39|0.29^HEAT|22-38|1.1^Arm|22-38|2.2^ARMC9_ARM|34-99|0.21^TPR_12|105-134|0.17^TPR_12|105-160|0.00047^TPR_1|106-127|0.00052^TPR_2|106-135|0.0025^TPR_17|107-126|5.6^TPR_14|108-148|0.038^TPR_8|112-126|2.3^TPR_16|112-132|0.15^TPR_11|113-153|1.3e-05^TPR_19|116-160|7e-06^TPR_6|117-128|9^TPR_1|142-168|1.2e-09^TPR_8|142-164|5.8e-05^TPR_12|142-210|5.4e-06^TPR_17|142-160|0.0058^TPR_2|143-164|1.8e-05^TPR_14|143-168|0.039^TPR_16|145-211|0.00012^TPR_6|146-160|0.27^Fis1_TPR_C|147-167|0.057^TPR_11|148-160|0.12^TPR_19|180-212|1.2^TPR_1|181-212|1.7e-06^TPR_2|181-212|1.7e-07^TPR_8|181-212|5.3e-07^TPR_14|182-212|0.076^TPR_11|182-196|0.22^TPR_6|182-212|0.00065^Fis1_TPR_C|185-212|0.0016^TPR_11|188-212|0.15^TPR_17|202-212|0.23^Exo70_N|206-230|1.3^Arm|349-374|0.93^HEAT|351-375|0.25^TPR_19|355-375|3.1^ARMC9_ARM|366-407|0.26^Arm|393-406|4^HEAT_2|431-446|1.9^ARMC9_ARM|433-476|0.2^Arm|433-465|0.62^HEAT|434-459|1.7^ARMC9_ARM|507-584|0.00013^Arm|527-551|0.027^Arm|555-567|2.5^Arm|563-579|2.1^ARMC9_ARM|601-673|0.021^HEAT_2|610-649|0.0035^HEAT|614-640|0.011^HEAT_2|616-694|5.1e-05^Arm|616-637|0.0025^HEAT|653-682|0.47^Arm|653-682|0.84 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.86Mb] 47 71 47 60.47 ONLY_REF_SPLICE YES_LDAS 1.3957 GT 1.9086 AG 1.6729 ENST00000483239.6 1-1632 ENST00000282251.10 1618-2685 chr11|+|[0]113316258-113316315[0]|[1]113323288-113323451[2]|[0]113323994-113324015[0]|[1]113324605-113324682[0]|[1]113325524-113325645[2]|[0]113329920-113329979[2]|[0]113334948-113335037[2]|[0]113338774-113338834[0]|[1]113339286-113339474[0]|[1]113340664-113340733[1]|[2]113341837-113341925[0]|[1]113344272-113344440[1]|[2]113350073-113350165[1]|[2]113351239-113351299[2]|[0]113352070-113352207[2]|[0]113359363-113359461[2]|[0]113359940-113360008[2]<==>chr11|-|[2]107326910-107327053[0]|[2]107329918-107330019[0]|[2]107334881-107334961[0]|[2]107336558-107336713[0]|[2]107348937-107349053[0]|[2]107353524-107353736[0]|[2]107390074-107390211[0]|[2]107392779-107392895[0] atggatgctgataaagagaaagatttgcagaaatttcttaaaaatgtggatgaaatctccaatttaattcaggagatgaattctgatgacccagttgtgcaacagaaagctgtcctggagacagaaaagagactactgcttatggaggaagaccaggaggaggatgaatgcaggaccaccttgaacaagactatgatcagtcctccacaaactgctatgaagagtgcagaagaaataaactcagaggccttcttggcatctgtggagaaggatgcaaaggaacgagccaagagaagaagggaaaacaaagtcttggcggatgccctaaaagaaaaagggaatgaagcatttgctgaaggcaattatgaaacagctatcctgcgctacagtgagggtttggagaagctgaaggacatgaaagtgctgtacaccaaccgagcccaggcttatatgaaacttgaggactatgagaaggcactggtggattgtgagtgggctctcaagtcattctcttttatgcagtgtgatgaaaaatgcacaaaagcatattttcacatgggaaaagccaacctggccctgaagaactacagtgtgtctagagagtgttataagaagatcttagaaataaaccccaagctgcaaacccaggtgaaaggttacctgaatcaagtagatcttcaggaaaaagcagaccttcaagaaaaggaagcccacgaactgctggattcaggaaagaacacagccgtgaccaccaagaacctcctggagaccctttccaagcctgaccagatccccttgttctatgctggggggattgagatcctgactgaaatgataaatgagtgcacagaacaaactttattcagaatgcacaatggatttagtatcatcagtgacaacgaggtcataagaaggtgtttttccacagcaggaaatgatgcagttgaagaaatggtctgtgtgtctgttctcaagctctggcaagcagtgtgcagcaggaacgaggaaaaccagcgtgtgctagtgatacaccatgacagggccaggctgttggccgccctcttgtcctccaaggtcctggccatccggcagcagagctttgccctgctgctgcatctcgcccagactgagagcggacggagcctgatcatcaaccaccttgacctgaccagattattggaagcgctggtgtcatttcttgatttctcggataaggaggccaacactgctatgggactgttcacagacttggctctggaagaaagattccaagtctggttccaggccaaccttccaggtgttctccctgcactcacaggcgttctgaagacagatcccaaggtaagcagctcctcggctctgtgccagtgcattgccatcatgggaaacctcagtgctgagcccactacccgaagacacatggcggcctgtgaggaatttggggatggctgcttgagcctcctggccaggtgtgaggaggatgtggacctgttcagagaggttatctacacactcctgggactcatgatgaacctgtgtcttcaggctccctttgtctctgaggtttgggctgtggaggtgagcagaaggtgcctgtctttactaaacagccaggatggaggaatcctgacaAATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATGGTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACAGCAGAAAATCAAAACAAGCTCTTTATGAGAATGGCATCTAAGTTTATGGGAAAAACAGATGGAGACTATTACACCCTGGATGACATGTTTGTCTCCAAAGCAGCTGAGAGAGAACGTCTTGGTGAAGAGGAAGAGAACCAAAGGAAAAAAGCTATTGCTGAGCATCGGAGTCTTGCTGCACAAATGGAAAAATGTCTGTATTGTTTTGACAGCTCTCAATTTCCCAAGCATCTTATTGTTGCAATAGGTGTTAAGGTTTATTTATGTTTACCCAACGTACGGTCTCTTACTGAGGGGCACTGCCTGATAGTCCCTTTGCAGCACCATAGAGCAGCTACTTTGTTGGATGAAGACATCTGGGAGGAGATCCAGATGTTCAGAAAATCATTGGTAAAGATGTTTGAAGATAAAGGATTAGACTGCATTTTTTTGGAAACTAATATGAGCATGAAGAAACAGTATCACATGGTTTATGAATGTATTCCTCTTCCCAAGGAAGTGGGTGACATGGCTCCCATCTATTTTAAGAAAGCCATAATGGAATCTGATGAAGAGTGGTCCATGAACAAGAAGTTGATAGATCTCTCTTCAAAAGATATCAGAAAGTCTGTACCCAGAGGGTTACCTTACTTCTCTGTGGATTTTGGCCTTCACGGAGGGTTTGCCCATGTCATTGAAGATCAGCACAAATTCCCTCATTACTTTGGAAAGGAAATCATAGGTGGGATGCTGGATATAGAACCAAGACTTTGGAGGAAAGGCATCCGAGAAAGCTTTGAGGATCAGAGGAAAAAAGCACTGCAGTTTGCTCAGTGGTGGAAACCATATGACTTCACCAAAAGTAAAAACTATTGA MDADKEKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISPPQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKSFSFMQCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSKVLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFREVIYTLLGLMMNLCLQAPFVSEVWAVEVSRRCLSLLNSQDGGILTNEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMNKKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGMLDIEPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTKSKNY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29024 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];INTERCHROMOSOMAL[chr6--chr8] 47 82 47 71.37 ONLY_REF_SPLICE YES_LDAS 1.5373 GT 1.7819 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29025 DNAJC3::HS6ST3 ENSG00000102580.15::ENSG00000185352.10 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 429 FALSE NA FALSE NA DNAJC3 ENSG00000102580.15 protein_coding + + chr13:95677139-95794988:+ chr13:95677337:+ chr13:96329393-96447242:+ chr13:96329591:+ HS6ST3 ENSG00000185352.10 protein_coding + + chr13:96090107-96839562:+ chr13:96832490:+ chr13:96742361-97491816:+ chr13:97484744:+ chr13:95690827,chr13:95690826 chr13:96522103,chr13:96522099 NA NA chr13:96343081,chr13:96343080 chr13:97174357,chr13:97174353 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TPR_20|35-64|0.0055^Alkyl_sulf_dimr-PARTIAL|35-82~|0.032^TPR_2|39-69|0.002^TPR_1|40-65|0.42^TPR_21-PARTIAL|40-82~|3.5e-09^TPR_16-PARTIAL|41-82~|6.4e-09^TPR_14|41-79|2.8e-05^TPR_17|41-57|2.4^TPR_11-PARTIAL|44-82~|1.6e-06^TPR_19-PARTIAL|47-82~|1e-07^TPR_10|47-64|1.6^TPR_4|47-59|0.27^TPR_6|48-69|3.5^TPR_12-PARTIAL|49-82~|0.012^TPR-S|51-71|5.7^ChAPs-PARTIAL|56-82~|0.00072^TPR_20-PARTIAL|58-82~|0.00022^ANAPC3-PARTIAL|61-82~|1.1e-05^TPR_17-PARTIAL|63-82~|3.4e-05^TPR_9-PARTIAL|65-82~|0.0079^TPR_1-PARTIAL|72-82~|1.9e-06^TPR_2-PARTIAL|73-82~|0.0022^TPR_8-PARTIAL|73-82~|0.00091^TPR_6-PARTIAL|73-82~|0.0069^TPR_10-PARTIAL|80-82~|8.9^TPR_11-PARTIAL|81-82~|0.0026 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.30Mb] 36 51 36 51 ONLY_REF_SPLICE YES_LDAS 1.1298 GT 1.9656 AG 1.6895 ENST00000602402.6 1-82 ENST00000376705.4 708-1416 chr13|+|[0]95677256-95677337[0]<==>chr13|+|[2]96832490-96833198[2] atggtggcccccggctccgtgaccagccggctgggctcggtattccccttcctgctagtcctggtggatctgcagtacgaagGAATTTCTATTACATCACAATGTTACGGGATCCAGTGTCACGTTACCTGAGCGAGTGGAAACATGTCCAGAGAGGGGCCACTTGGAAAACCTCTCTTCATATGTGTGATGGAAGAAGCCCCACCCCAGATGAGCTGCCTACCTGCTACCCTGGGGATGACTGGTCTGGGGTCAGCTTGCGGGAGTTTATGGATTGCACCTACAACCTGGCTAACAATCGCCAGGTGCGCATGCTGGCTGACCTCAGCCTGGTGGGCTGCTATAACTTGACTTTCATGAACGAGAGTGAAAGAAACACCATCCTGTTGCAGAGTGCAAAGAACAACCTGAAGAACATGGCCTTCTTTGGGCTCACTGAGTTCCAGAGGAAGACACAGTTTCTCTTTGAGAGAACATTCAACCTCAAGTTCATCTCCCCCTTCACACAGTTCAACATCACGCGGGCTTCTAACGTGGAGATCAACGAGGGTGCCCGCCAACGCATTGAGGATCTAAACTTCCTGGACATGCAGCTTTACGAGTATGCAAAAGATCTCTTCCAGCAGCGCTACCACCACACCAAGCAGCTAGAGCACCAGAGGGACCGCCAGAAGCGGCGGGAGGAGCGGAGGCTGCAGCGAGAGCACAGGGACCACCAGTGGCCCAAAGAAGATGGGGCTGCAGAAGGGACTGTCACCGAGGACTACAACAGCCAGGTGGTGAGATGGTGA MVAPGSVTSRLGSVFPFLLVLVDLQYEGISITSQCYGIQCHVT*ASGNMSREGPLGKPLFICVMEEAPPQMSCLPATLGMTGLGSACGSLWIAPTTWLTIARCACWLTSAWWAAIT*LS*TRVKETPSCCRVQRTT*RTWPSLGSLSSRGRHSFSLREHSTSSSSPPSHSSTSRGLLTWRSTRVPANALRI*TSWTCSFTSMQKISSSSATTTPSS*STRGTARSGGRSGGCSESTGTTSGPKKMGLQKGLSPRTTTARW*DG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29026 ENSG00000286084::PVT1 ENSG00000286084.3::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 431 TRUE 820 TRUE 299 ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105404087:+ chr6:105851082-106036948:+ chr6:105851962:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128152677:+ chr8:128806772-129199347:+ chr8:129164923:+ chr6:105404816,chr6:105404816,chr6:105404955,chr6:105404954,chr6:105404956,chr6:105404957,chr6:105404962,chr6:105404964,chr6:105404965,chr6:105404966,chr6:105404968,chr6:105404975,chr6:105404976,chr6:105404978,chr6:105404979,chr6:105404980,chr6:105404985,chr6:105404983,chr6:105404989,chr6:105404990,chr6:105404995,chr6:105404981,chr6:105404998,chr6:105405004,chr6:105405005,chr6:105404967,chr6:105405007,chr6:105405012,chr6:105405013,chr6:105405016,chr6:105405015,chr6:105405018,chr6:105405020,chr6:105405021,chr6:105405003,chr6:105405024,chr6:105405025,chr6:105405026,chr6:105404980,chr6:105404816,chr6:105404810,chr6:105404800 chr8:128125846,chr8:128125850,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877267,chr8:128125844,chr8:128125844,chr8:128125844 NA NA chr6:105852691,chr6:105852691,chr6:105852830,chr6:105852829,chr6:105852831,chr6:105852832,chr6:105852837,chr6:105852839,chr6:105852840,chr6:105852841,chr6:105852843,chr6:105852850,chr6:105852851,chr6:105852853,chr6:105852854,chr6:105852855,chr6:105852860,chr6:105852858,chr6:105852864,chr6:105852865,chr6:105852870,chr6:105852856,chr6:105852873,chr6:105852879,chr6:105852880,chr6:105852842,chr6:105852882,chr6:105852887,chr6:105852888,chr6:105852891,chr6:105852890,chr6:105852893,chr6:105852895,chr6:105852896,chr6:105852878,chr6:105852899,chr6:105852900,chr6:105852901,chr6:105852855,chr6:105852691,chr6:105852685,chr6:105852675 chr8:129138092,chr8:129138096,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889513,chr8:129138090,chr8:129138090,chr8:129138090 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 34 41 34 18.1 ONLY_REF_SPLICE YES_LDAS 0.6767 GT 1.8256 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29027 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 426 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113352207:+ chr11:113185301-113254266:+ chr11:113222929:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exo70_N|4-62|0.00028^HEAT_2|20-39|0.29^HEAT|22-38|1.1^Arm|22-38|2.2^ARMC9_ARM|34-99|0.21^TPR_12|105-134|0.17^TPR_12|105-160|0.00047^TPR_1|106-127|0.00052^TPR_2|106-135|0.0025^TPR_17|107-126|5.6^TPR_14|108-148|0.038^TPR_8|112-126|2.3^TPR_16|112-132|0.15^TPR_11|113-153|1.3e-05^TPR_19|116-160|7e-06^TPR_6|117-128|9^TPR_1|142-168|1.2e-09^TPR_8|142-164|5.8e-05^TPR_12|142-210|5.4e-06^TPR_17|142-160|0.0058^TPR_2|143-164|1.8e-05^TPR_14|143-168|0.039^TPR_16|145-211|0.00012^TPR_6|146-160|0.27^Fis1_TPR_C|147-167|0.057^TPR_11|148-160|0.12^TPR_19|180-212|1.2^TPR_1|181-212|1.7e-06^TPR_2|181-212|1.7e-07^TPR_8|181-212|5.3e-07^TPR_14|182-212|0.076^TPR_11|182-196|0.22^TPR_6|182-212|0.00065^Fis1_TPR_C|185-212|0.0016^TPR_11|188-212|0.15^TPR_17|202-212|0.23^Exo70_N|206-230|1.3^Arm|349-374|0.93^HEAT|351-375|0.25^TPR_19|355-375|3.1^ARMC9_ARM|366-407|0.26^Arm|393-406|4^HEAT_2|431-446|1.9^ARMC9_ARM|433-476|0.2^Arm|433-465|0.62^HEAT|434-459|1.7^ARMC9_ARM|507-584|0.00013^Arm|527-551|0.027^Arm|555-567|2.5^Arm|563-579|2.1^ARMC9_ARM|601-673|0.021^HEAT_2|610-649|0.0035^HEAT|614-640|0.011^HEAT_2|616-694|5.1e-05^Arm|616-637|0.0025^HEAT|653-682|0.47^Arm|653-682|0.84 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.86Mb] 31 29 31 7.05 ONLY_REF_SPLICE YES_LDAS 0.4942 GT 1.8256 AG 1.6729 ENST00000483239.6 1-1464 ENST00000282251.10 1618-2685 chr11|+|[0]113316258-113316315[0]|[1]113323288-113323451[2]|[0]113323994-113324015[0]|[1]113324605-113324682[0]|[1]113325524-113325645[2]|[0]113329920-113329979[2]|[0]113334948-113335037[2]|[0]113338774-113338834[0]|[1]113339286-113339474[0]|[1]113340664-113340733[1]|[2]113341837-113341925[0]|[1]113344272-113344440[1]|[2]113350073-113350165[1]|[2]113351239-113351299[2]|[0]113352070-113352207[2]<==>chr11|-|[2]107326910-107327053[0]|[2]107329918-107330019[0]|[2]107334881-107334961[0]|[2]107336558-107336713[0]|[2]107348937-107349053[0]|[2]107353524-107353736[0]|[2]107390074-107390211[0]|[2]107392779-107392895[0] atggatgctgataaagagaaagatttgcagaaatttcttaaaaatgtggatgaaatctccaatttaattcaggagatgaattctgatgacccagttgtgcaacagaaagctgtcctggagacagaaaagagactactgcttatggaggaagaccaggaggaggatgaatgcaggaccaccttgaacaagactatgatcagtcctccacaaactgctatgaagagtgcagaagaaataaactcagaggccttcttggcatctgtggagaaggatgcaaaggaacgagccaagagaagaagggaaaacaaagtcttggcggatgccctaaaagaaaaagggaatgaagcatttgctgaaggcaattatgaaacagctatcctgcgctacagtgagggtttggagaagctgaaggacatgaaagtgctgtacaccaaccgagcccaggcttatatgaaacttgaggactatgagaaggcactggtggattgtgagtgggctctcaagtcattctcttttatgcagtgtgatgaaaaatgcacaaaagcatattttcacatgggaaaagccaacctggccctgaagaactacagtgtgtctagagagtgttataagaagatcttagaaataaaccccaagctgcaaacccaggtgaaaggttacctgaatcaagtagatcttcaggaaaaagcagaccttcaagaaaaggaagcccacgaactgctggattcaggaaagaacacagccgtgaccaccaagaacctcctggagaccctttccaagcctgaccagatccccttgttctatgctggggggattgagatcctgactgaaatgataaatgagtgcacagaacaaactttattcagaatgcacaatggatttagtatcatcagtgacaacgaggtcataagaaggtgtttttccacagcaggaaatgatgcagttgaagaaatggtctgtgtgtctgttctcaagctctggcaagcagtgtgcagcaggaacgaggaaaaccagcgtgtgctagtgatacaccatgacagggccaggctgttggccgccctcttgtcctccaaggtcctggccatccggcagcagagctttgccctgctgctgcatctcgcccagactgagagcggacggagcctgatcatcaaccaccttgacctgaccagattattggaagcgctggtgtcatttcttgatttctcggataaggaggccaacactgctatgggactgttcacagacttggctctggaagaaagattccaagtctggttccaggccaaccttccaggtgttctccctgcactcacaggcgttctgaagacagatcccaaggtaagcagctcctcggctctgtgccagtgcattgccatcatgggaaacctcagtgctgagcccactacccgaagacacatggcggcctgtgaggaatttggggatggctgcttgagcctcctgAATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATGGTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACAGCAGAAAATCAAAACAAGCTCTTTATGAGAATGGCATCTAAGTTTATGGGAAAAACAGATGGAGACTATTACACCCTGGATGACATGTTTGTCTCCAAAGCAGCTGAGAGAGAACGTCTTGGTGAAGAGGAAGAGAACCAAAGGAAAAAAGCTATTGCTGAGCATCGGAGTCTTGCTGCACAAATGGAAAAATGTCTGTATTGTTTTGACAGCTCTCAATTTCCCAAGCATCTTATTGTTGCAATAGGTGTTAAGGTTTATTTATGTTTACCCAACGTACGGTCTCTTACTGAGGGGCACTGCCTGATAGTCCCTTTGCAGCACCATAGAGCAGCTACTTTGTTGGATGAAGACATCTGGGAGGAGATCCAGATGTTCAGAAAATCATTGGTAAAGATGTTTGAAGATAAAGGATTAGACTGCATTTTTTTGGAAACTAATATGAGCATGAAGAAACAGTATCACATGGTTTATGAATGTATTCCTCTTCCCAAGGAAGTGGGTGACATGGCTCCCATCTATTTTAAGAAAGCCATAATGGAATCTGATGAAGAGTGGTCCATGAACAAGAAGTTGATAGATCTCTCTTCAAAAGATATCAGAAAGTCTGTACCCAGAGGGTTACCTTACTTCTCTGTGGATTTTGGCCTTCACGGAGGGTTTGCCCATGTCATTGAAGATCAGCACAAATTCCCTCATTACTTTGGAAAGGAAATCATAGGTGGGATGCTGGATATAGAACCAAGACTTTGGAGGAAAGGCATCCGAGAAAGCTTTGAGGATCAGAGGAAAAAAGCACTGCAGTTTGCTCAGTGGTGGAAACCATATGACTTCACCAAAAGTAAAAACTATTGA MDADKEKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISPPQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKSFSFMQCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSKVLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLNEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMNKKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGMLDIEPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTKSKNY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29029 ENSG00000286084::PVT1 ENSG00000286084.3::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 430 TRUE 820 TRUE 299 ENSG00000286084 ENSG00000286084.3 lncRNA + + chr6:105403207-105589073:+ chr6:105404087:+ chr6:105851082-106036948:+ chr6:105851962:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128147862:+ chr8:128806772-129199347:+ chr8:129160108:+ chr6:105404816,chr6:105404816,chr6:105404955,chr6:105404954,chr6:105404956,chr6:105404957,chr6:105404962,chr6:105404964,chr6:105404965,chr6:105404966,chr6:105404968,chr6:105404975,chr6:105404976,chr6:105404978,chr6:105404979,chr6:105404980,chr6:105404985,chr6:105404983,chr6:105404989,chr6:105404990,chr6:105404995,chr6:105404981,chr6:105404998,chr6:105405004,chr6:105405005,chr6:105404967,chr6:105405007,chr6:105405012,chr6:105405013,chr6:105405016,chr6:105405015,chr6:105405018,chr6:105405020,chr6:105405021,chr6:105405003,chr6:105405024,chr6:105405025,chr6:105405026,chr6:105404980,chr6:105404816,chr6:105404810,chr6:105404800 chr8:128125846,chr8:128125850,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877224,chr8:127877267,chr8:128125844,chr8:128125844,chr8:128125844 NA NA chr6:105852691,chr6:105852691,chr6:105852830,chr6:105852829,chr6:105852831,chr6:105852832,chr6:105852837,chr6:105852839,chr6:105852840,chr6:105852841,chr6:105852843,chr6:105852850,chr6:105852851,chr6:105852853,chr6:105852854,chr6:105852855,chr6:105852860,chr6:105852858,chr6:105852864,chr6:105852865,chr6:105852870,chr6:105852856,chr6:105852873,chr6:105852879,chr6:105852880,chr6:105852842,chr6:105852882,chr6:105852887,chr6:105852888,chr6:105852891,chr6:105852890,chr6:105852893,chr6:105852895,chr6:105852896,chr6:105852878,chr6:105852899,chr6:105852900,chr6:105852901,chr6:105852855,chr6:105852691,chr6:105852685,chr6:105852675 chr8:129138092,chr8:129138096,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889470,chr8:128889513,chr8:129138090,chr8:129138090,chr8:129138090 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 26 58 26 39.9 ONLY_REF_SPLICE YES_LDAS 0.8559 GT 1.8256 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29032 SETD2::SCAP ENSG00000181555.22::ENSG00000114650.21 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SETD2 ENSG00000181555.22 protein_coding - - chr3:47016428-47164113:- chr3:47163854:- chr3:47057918-47205603:- chr3:47205344:- SCAP ENSG00000114650.21 protein_coding - - chr3:47413681-47477126:- chr3:47443091:- chr3:47455171-47518616:- chr3:47484581:- chr3:47134192,chr3:47134200 chr3:47467533,chr3:47467538 NA NA chr3:47175682,chr3:47175690 chr3:47509023,chr3:47509028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SETD2:Oncogene","SETD2:ArcherDX_panel","SETD2:FoundationOne_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.25Mb] 21 24 21 23.4 ONLY_REF_SPLICE YES_LDAS 0.5766 GT 1.6729 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 47139445 FALSE 47484581 TRUE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE SET domain containing 2 1 Yes clear cell renal carcinoma epithelial TSG nonsense, frameshift, splice_site, missense FALSE NA NA NA NA NA NA NA NA NA 29034 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107459368:- chr6:107473766-107780768:- chr6:107780572:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107429149,chr6:107429189,chr6:107429151,chr6:107429148,chr6:107429173,chr6:107429146,chr6:107429146,chr6:107429146,chr6:107429147,chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106510507,chr6:106510507,chr6:106510507,chr6:106510541,chr6:106510507,chr6:106510510,chr6:106510516,chr6:106510519,chr6:106510511,chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107750353,chr6:107750393,chr6:107750355,chr6:107750352,chr6:107750377,chr6:107750350,chr6:107750350,chr6:107750350,chr6:107750351,chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106958382,chr6:106958382,chr6:106958382,chr6:106958416,chr6:106958382,chr6:106958385,chr6:106958391,chr6:106958394,chr6:106958386,chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 16 5 16 0.26 INCL_NON_REF_SPLICE YES_LDAS 0.2112 GT 1.5546 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29035 PDSS2::CRYBG1 ENSG00000164494.12::ENSG00000112297.18 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 419 TRUE 813 TRUE 293 PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107429149,chr6:107429189,chr6:107429151,chr6:107429148,chr6:107429173,chr6:107429146,chr6:107429146,chr6:107429146,chr6:107429147,chr6:107443755,chr6:107443756,chr6:107443770,chr6:107443755,chr6:107443755,chr6:107443760,chr6:107443776,chr6:107443763 chr6:106510507,chr6:106510507,chr6:106510507,chr6:106510541,chr6:106510507,chr6:106510510,chr6:106510516,chr6:106510519,chr6:106510511,chr6:106401617,chr6:106401617,chr6:106401616,chr6:106401621,chr6:106401622,chr6:106401612,chr6:106401612,chr6:106401612 NA NA chr6:107750353,chr6:107750393,chr6:107750355,chr6:107750352,chr6:107750377,chr6:107750350,chr6:107750350,chr6:107750350,chr6:107750351,chr6:107764959,chr6:107764960,chr6:107764974,chr6:107764959,chr6:107764959,chr6:107764964,chr6:107764980,chr6:107764967 chr6:106958382,chr6:106958382,chr6:106958382,chr6:106958416,chr6:106958382,chr6:106958385,chr6:106958391,chr6:106958394,chr6:106958386,chr6:106849492,chr6:106849492,chr6:106849491,chr6:106849496,chr6:106849497,chr6:106849487,chr6:106849487,chr6:106849487 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame polyprenyl_synt-PARTIAL|110-296~|2e-20 Crystall|1431-1500|1.6e-14^IL4_i_Ig|1460-1491|0.0016^Inhibitor_I36|1474-1484|0.56^Crystall|1533-1612|6.2e-23^IL4_i_Ig|1572-1593|0.0021^Crystall|1627-1720|2.3e-28^IL4_i_Ig|1628-1649|0.017^IL4_i_Ig|1679-1700|0.0025^Inhibitor_I36|1683-1701|0.72^Crystall|1729-1811|4.7e-26^IL4_i_Ig|1769-1789|0.0048^Inhibitor_I36|1774-1789|0.14^Crystall|1824-1903|4.2e-24^Inhibitor_I36|1827-1874|0.00087^IL4_i_Ig|1862-1881|0.053^Crystall|1912-1990|2.5e-26^IL4_i_Ig|1913-1931|1.9^Inhibitor_I36|1914-1964|9.5e-05^IL4_i_Ig|1952-1977|0.0057^Ricin_B_lectin|1997-2124|5.2e-12^RicinB_lectin_2|1997-2038|0.0041^RicinB_lectin_2|2052-2111|0.00017 ["CCLE_StarF2019"] 16 32 16 2.37 ONLY_REF_SPLICE YES_LDAS 0.2386 GT 1.8892 AG 1.8323 ENST00000369037.9 1-296 ENST00000633556.3 313-6396 chr6|-|[1]107458990-107459285[0]<==>chr6|+|[0]106511430-106513039[1]|[2]106519131-106521453[2]|[0]106525133-106525180[2]|[0]106525268-106525386[1]|[2]106527305-106527470[2]|[0]106530176-106530315[1]|[2]106539403-106539529[2]|[0]106541586-106541621[2]|[0]106543440-106543597[1]|[2]106544571-106544697[2]|[0]106544788-106544933[1]|[2]106551852-106551978[2]|[0]106552184-106552216[2]|[0]106553455-106553567[1]|[2]106555768-106555897[2]|[0]106558486-106558625[1]|[2]106560803-106560926[2]|[0]106561342-106561500[2]|[0]106563764-106563926[0]|[1]106568472-106568566[2] atgaactttcggcagctgctgttgcacttgccacgttatcttggagcctcgggttccccgcgtcgcctgtggtggtccccgtccctcgacaccatctcctcggtgggctcttggcgtggtcggtcctccaagtccccggcccactggaatcaggtagtgtcagaggcggagaagatcgtggggtaccccacgtccttcatgagccttcgctgcctgctgagcgacgagctcagcaacatcgctatgcaggtgcggaagctggtgggcactcagcaccctctgcttaccacagccagTCCAGAGCACAACCTCCAGAAGACAACAGAAGGAAGCCAGTTTTGGGGAAACTTGGCACTCTATTCACTGCAGGAAGGAGAAGAAACAGTAGAAACGGGTTAGAGAGTCCCACCAGATCAAATGCCAAACCACTCTCTCCCAAAGATGTGGTAGCCTCTCCTAAGCTCCCAGAGAGAGAGAGTGAGAGGAGCAGATCTCAGAGCAGCCAACTGAAGCAAACGGACACAAGCGAGGAGGGCTCCCCGCGGGAGAATCCCCGAGAGGCAGAGGGCGAGCTCCCCGAGAGCGGTGGCCCCGCAGCCCCCCCTGACGCCGAGCTGTCACCTCGCTGGAGCAGCAGTGCAGCGGCTGTGGCTGTGCAGCAGTGCCATGAAAATGATTCACCCCAATTAGAACCTCTGGAGGCAGAGGGAGAGCCTTTCCCAGATGCCACCACCACTGCCAAGCAGCTGCATTCCTCGCCGGGAAATTCCTCCAGGCAAGAGAACGCAGAGACGCCCGCCCGCAGTCCGGGGGAGGACGCTTCACCAGGTGCTGGCCACGAACAGGAGGCTTTCCTGGGTGTGAGGGGTGCGCCAGGGTCGCCCACCCAGGAGCGGCCCGCGGGAGGACTAGGCGAGGCCCCTAACGGAGCCCCCAGTGTGTGTGCCGAAGAAGGCTCCCTGGGGCCCCGCAACGCCCGCAGCCAGCCCCCCAAGGGCGCGTCTGATTTGCCAGGTGAGCCTCCGGCCGAGGGCGCAGCGCACACGGCCAGCTCCGCGCAGGCAGACTGCACAGCCCGCCCCAAGGGTCACGCCCACCCTGCTAAGGTGCTAACTTTGGACATCTACTTGAGTAAGACTGAGGGGGCACAAGTGGACGAGCCGGTCGTGATTACTCCCAGAGCGGAAGATTGCGGTGACTGGGACGACATGGAGAAGAGGTCCAGCGGCCGTAGGTCGGGGAGGCGGAGGGGGTCGCAGAAATCCACCGACTCCCCCGGCGCGGACGCCGAGCTCCCTGAGAGCGCTGCCAGGGACGACGCGGTGTTCGACGACGAGGTGGCGCCAAACGCGGCCAGCGATAACGCCTCGGCGGAAAAGAAAGTGAAATCTCCGCGGGCAGCCCTCGACGGGGGCGTTGCCTCCGCTGCGAGCCCAGAGTCCAAGCCCAGCCCCGGTACCAAAGGGCAGCTCCGAGGGGAGTCGGACCGGAGCAAACAGCCACCCCCGGCTTCGTCCCCCACGAAGAGGAAGGGCAGGAGCCGTGCCCTCGAGGCCGTGCCCGCCCCGCCCGCCAGCGGCCCCCGGGCTCCCGCCAAGGAGTCCCCACCCAAGAGGGTGCCCGATCCCAGCCCAGTCACCAAGGGCACTGCGGCCGAGAGCGGGGAGGAGGCGGCGCGGGCCATCCCCCGCGAGCTCCCGGTCAAGAGCAGCTCGCTGCTGCCGGAGATCAAGCCCGAGCACAAGAGGGGCCCGCTCCCCAACCACTTCAACGGCCGGGCAGAGGGAGGTCGAAGCAGAGAGCTGGGCAGAGCGGCCGGAGCGCCTGGAGCTTCTGACGCCGACGGCTTGAAGCCCAGGAACCATTTCGGCGTGGGCAGGTCGACAGTGACCACTAAAGTGACCCTCCCTGCCAAGCCCAAACATGTGGAACTAAATCTTAAAACCCCTAAGAATCTTGACAGTTTGGGAAATGAGCACAATCCATTTAGCCAGCCAGTTCACAAAGGCAACACTGCCACCAAAATCTCCTTATTTGAAAACAAACGGACAAACAGTAGCCCAAGACACACTGACATTCGAGGCCAAAGGAATACTCCTGCCTCTAGTAAAACGTTTGTTGGGAGGGCAAAGCTGAATTTAGCCAAAAAAGCCAAAGAAATGGAGCAACCTGAAAAGAAAGTAATGCCAAACAGTCCCCAGAATGGTGTGCTGGTTAAGGAAACTGCTATAGAAACCAAAGTTACCGTCTCGGAAGAAGAGATTCTGCCAGCAACCAGAGGAATGAATGGAGACTCTTCTGAGAATCAAGCTCTTGGTCCTCAGCCTAACCAAGATGATAAAGCAGATGTACAAACAGATGCTGGCTGCCTTTCAGAACCAGTGGCTTCTGCTCTGATTCCTGTCAAGGATCATAAGCTCTTAGAGAAGGAGGACTCAGAGGCTGCAGACAGCAAAAGCCTTGTACTTGAAAATGTAACCGATACAGCACAAGACATCCCCACCACTGTGGATACCAAAGATTTACCTCCAACGGCCATGCCAAAGCCACAGCATACATTTTCTGACTCACAGTCCCCTGCTGAGTCATCTCCTGGGCCTTCTCTTTCACTGTCTGCACCCGCTCCTGGGGATGTTCCCAAAGACACATGTGTTCAATCACCCATAAGCAGTTTCCCATGCACTGATCTAAAAGTGTCAGAAAACCATAAAGGATGTGTTTTGCCTGTGTCTCGTCAGAACAATGAGAAAATGCCACTTTTAGAACTTGGAGGAGAAACAACCCCTCCTTTGTCCACAGAGCGTAGTCCAGAAGCTGTGGGAAGTGAGTGTCCATCCAGAGTCCTCGTCCAGGTCAGGTCCTTCGTGCTCCCCGTGGAGAGCACCCAGGATGTGAGCTCCCAGGTCATCCCAGAGAGCTCTGAAGTTAGAGAAGTGCAGTTGCCAACTTGTCACAGTAATGAACCTGAAGTGGTTTCCGTTGCAAGTTGTGCTCCCCCACAAGAGGAAGTACTGGGCAATGAACACTCTCATTGCACAGCAGAGCTCGCGGCAAAATCTGGCCCACAAGTCATACCGCCAGCATCAGAGAAAACTCTGCCTATTCAGGCTCAAAGTCAGGGCAGCAGAACACCCCTGATGGCTGAATCCAGTCCCACCAACTCTCCCAGCAGCGGAAATCACTTAGCCACTCCTCAAAGGCCAGATCAGACTGTTACAAATGGCCAGGATAGCCCTGCCAGCCTTTTGAACATTTCTGCTGGTAGTGATGATAGTGTATTTGATTCTTCTTCTGATATGGAAAAATTCACTGAAATTATAAAACAGATGGATAGCGCAGTTTGTATGCCCATGAAAAGAAAGAAGGCCAGGATGCCAAACTCTCCTGCTCCTCACTTTGCCATGCCTCCTATTCACGAAGACCATTTAGAAAAGGTGTTTGATCCCAAAGTGTTTACCTTTGGTTTGGGGAAGAAGAAGGAAAGTCAGCCAGAAATGTCACCGGCTTTACATTTGATGCAGAACCTTGACACAAAATCCAAACTGAGACCCAAACGTGCATCTGCTGAACAGAGCGTCCTCTTCAAGTCCCTGCACACCAACACTAATGGGAACAGTGAGCCTCTGGTGATGCCGGAAATCAATGACAAAGAGAACAGGGACGTCACAAATGGTGGCATTAAGAGATCGAGACTAGAAAAAAGTGCACTTTTCTCAAGCTTGTTATCTTCTTTACCACAAGACAAAATCTTTTCTCCTTCTGTGACATCAGTCAACACTATGACCACGGCTTTCAGTACTTCTCAGAACGGTTCCCTATCTCAGTCTTCAGTGTCACAGCCCACGACTGAGGGTGCCCCGCCCTGTGGTTTGAACAAAGAACAGTCAAATCTTCTGCCCGACAACTCCTTAAAGGTCTTCAATTTCAACTCGTCAAGTACATCACACTCCAGTTTGAAAAGTCCAAGCCACATGGAAAAATACCCGCAAAAAGAGAAAACCAAAGAAGATCTGGATTCACGAAGCAACCTACACTTGCCAGAAACTAAATTTTCTGAATTGTCAAAACTGAAGAATGATGATATGGAAAAGGCTAATCATATTGAAAGTGTTATTAAATCAAACTTGCCAAACTGTGCAAACAGTGACACCGACTTCATGGGTCTTTTCAAATCAAGCCGGTATGACCCAAGCATTTCTTTTTCTGGAATGTCATTATCAGACACAATGACACTTAGAGGAAGTGTCCAAAATAAACTCAATCCCCGACCTGGAAAGGTAGTGATATATAGTGAACCCGACGTCTCTGAGAAGTGCATTGAAGTTTTCAGTGACATTCAGGATTGCAGTTCTTGGAGCCTCTCTCCAGTGATACTCATAAAAGTTGTTAGAGGATGTTGGATTTTGTATGAGCAACCAAATTTTGAAGGGCACTCCATCCCCTTAGAAGAAGGAGAATTGGAACTCTCTGGTCTCTGGGGTATAGAAGACATTTTGGAAAGGCACGAAGAAGCAGAGTCTGATAAGCCAGTGGTGATTGGTTCCATCAGACATGTGGTTCAGGATTACAGAGTTAGTCACATTGACTTATTTACTGAACCAGAAGGGTTAGGAATCCTAAGTTCCTACTTTGATGATACTGAAGAAATGCAGGGATTTGGTGTAATGCAGAAGACTTGTTCCATGAAAGTACATTGGGGCACGTGGCTGATTTATGAAGAACCTGGATTTCAGGGTGTTCCTTTCATCCTGGAACCTGGTGAATACCCTGACTTGTCCTTCTGGGATACAGAAGAAGCGTACATTGGATCCATGCGGCCTCTGAAAATGGGTGGCCGTAAAGTTGAATTCCCTACAGATCCAAAGGTAGTTGTTTATGAAAAGCCTTTCTTTGAAGGAAAATGTGTGGAACTAGAAACAGGAATGTGTAGTTTTGTCATGGAGGGAGGTGAAACAGAAGAGGCGACTGGAGACGATCATTTGCCGTTTACGTCAGTGGGGTCTATGAAAGTTCTAAGAGGCATTTGGGTTGCATATGAGAAACCTGGATTTACCGGTCATCAGTATTTGCTAGAAGAAGGAGAATACAGGGACTGGAAAGCCTGGGGAGGTTACAATGGAGAGCTTCAGTCTTTACGACCTATATTAGGTGATTTTTCAAATGCTCACATGATAATGTACAGTGAAAAAAACTTTGGATCCAAAGGTTCCAGTATTGATGTATTGGGAATTGTTGCTAATTTAAAGGAGACTGGATATGGAGTGAAGACACAGTCTATTAATGTACTGAGTGGAGTATGGGTAGCCTATGAAAATCCTGACTTCACAGGAGAACAGTATATACTGGATAAAGGATTTTATACCAGTTTTGAGGACTGGGGAGGCAAAAATTGTAAGATCTCTTCTGTTCAACCTATATGTTTGGATTCTTTCACTGGCCCAAGGAGACGAAATCAGATTCACTTGTTTTCAGAACCACAGTTTCAAGGTCACAGTCAAAGTTTTGAAGAAACAACAAGTCAAATTGATGATTCATTTTCTACCAAGTCTTGCAGAGTTTCAGGAGGCAGCTGGGTTGTATATGATGGAGAAAATTTCACTGGTAATCAATACGTGTTGGAAGAAGGCCATTATCCTTGTCTGTCTGCAATGGGATGCCCGCCTGGAGCAACTTTCAAGTCTCTTCGTTTTATAGATGTTGAATTTTCTGAACCAACAATTATTCTCTTTGAAAGAGAAGACTTCAAAGGAAAAAAGATTGAACTTAATGCAGAAACTGTCAATCTCCGATCCCTGGGATTCAACACACAAATACGCTCTGTTCAGGTTATTGGTGGCATATGGGTTACTTATGAATATGGCAGTTACAGAGGGCGACAGTTCCTATTGTCACCTGCAGAAGTACCTAATTGGTATGAATTCAGTGGCTGTCGCCAAATAGGTTCTCTACGACCTTTTGTTCAGAAGCGAATTTATTTCAGACTTCGAAACAAAGCAACAGGGTTATTCATGTCAACCAATGGAAACTTAGAGGATCTGAAGCTTCTGAGGATACAGGTCATGGAGGATGTCGGGGCCGATGATCAGATTTGGATCTATCAAGAAGGATGTATCAAATGCAGGATAGCAGAAGACTGCTGCCTGACGATTGTGGGCAGCCTGGTAACATCTGGCTCCAAGCTAGGCCTGGCCCTGGACCAGAATGCTGACAGCCAGTTCTGGAGCTTGAAGTCCGATGGCAGGATTTACAGCAAGTTGAAGCCAAATTTAGTTTTAGACATTAAAGGGGGCACACAGTATGATCAAAATCACATTATCCTCAACACTGTCAGCAAAGAGAAGTTTACACAAGTGTGGGAAGCCATGGTCCTATATACCTGA MNFRQLLLHLPRYLGASGSPRRLWWSPSLDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTASPEHNLQKTTEGSQFWGNLALYSLQEGEETVETG*RVPPDQMPNHSLPKMW*PLLSSQRERVRGADLRAAN*SKRTQARRAPRGRIPERQRASSPRAVAPQPPLTPSCHLAGAAVQRLWLCSSAMKMIHPN*NLWRQRESLSQMPPPLPSSCIPRREIPPGKRTQRRPPAVRGRTLHQVLATNRRLSWV*GVRQGRPPRSGPRED*ARPLTEPPVCVPKKAPWGPATPAASPPRARLICQVSLRPRAQRTRPAPRRQTAQPAPRVTPTLLRC*LWTST*VRLRGHKWTSRS*LLPERKIAVTGTTWRRGPAAVGRGGGGGRRNPPTPPARTPSSLRALPGTTRCSTTRWRQTRPAITPRRKRK*NLRGQPSTGALPPLRAQSPSPAPVPKGSSEGSRTGANSHPRLRPPRRGRAGAVPSRPCPPRPPAAPGLPPRSPHPRGCPIPAQSPRALRPRAGRRRRGPSPASSRSRAARCCRRSSPSTRGARSPTTSTAGQREVEAESWAERPERLELLTPTA*SPGTISAWAGRQ*PLK*PSLPSPNMWN*ILKPLRILTVWEMSTIHLASQFTKATLPPKSPYLKTNGQTVAQDTLTFEAKGILLPLVKRLLGGQS*I*PKKPKKWSNLKRK*CQTVPRMVCWLRKLL*KPKLPSRKKRFCQQPEE*METLLRIKLLVLSLTKMIKQMYKQMLAAFQNQWLLL*FLSRIISS*RRRTQRLQTAKALYLKM*PIQHKTSPPLWIPKIYLQRPCQSHSIHFLTHSPLLSHLLGLLFHCLHPLLGMFPKTHVFNHP*AVSHALI*KCQKTIKDVFCLCLVRTMRKCHF*NLEEKQPLLCPQSVVQKLWEVSVHPESSSRSGPSCSPWRAPRM*APRSSQRALKLEKCSCQLVTVMNLKWFPLQVVLPHKRKYWAMNTLIAQQSSRQNLAHKSYRQHQRKLCLFRLKVRAAEHP*WLNPVPPTLPAAEIT*PLLKGQIRLLQMARIALPAF*TFLLVVMIVYLILLLIWKNSLKL*NRWIAQFVCP*KERRPGCQTLLLLTLPCLLFTKTI*KRCLIPKCLPLVWGRRRKVSQKCHRLYI*CRTLTQNPN*DPNVHLLNRASSSSPCTPTLMGTVSLW*CRKSMTKRTGTSQMVALRDRD*KKVHFSQACYLLYHKTKSFLLL*HQSTL*PRLSVLLRTVPYLSLQCHSPRLRVPRPVV*TKNSQIFCPTTP*RSSISTRQVHHTPV*KVQATWKNTRKKRKPKKIWIHEATYTCQKLNFLNCQN*RMMIWKRLIILKVLLNQTCQTVQTVTPTSWVFSNQAGMTQAFLFLECHYQTQ*HLEEVSKINSIPDLER**YIVNPTSLRSALKFSVTFRIAVLGASLQ*YS*KLLEDVGFCMSNQILKGTPSP*KKENWNSLVSGV*KTFWKGTKKQSLISQW*LVPSDMWFRITELVTLTYLLNQKG*ES*VPTLMILKKCRDLV*CRRLVP*KYIGARG*FMKNLDFRVFLSSWNLVNTLTCPSGIQKKRTLDPCGL*KWVAVKLNSLQIQR*LFMKSLSLKENVWN*KQECVVLSWREVKQKRRLETIICRLRQWGL*KF*EAFGLHMRNLDLPVISIC*KKENTGTGKPGEVTMESFSLYDLY*VIFQMLT**CTVKKTLDPKVPVLMYWELLLI*RRLDME*RHSLLMY*VEYG*PMKILTSQENSIYWIKDFIPVLRTGEAKIVRSLLFNLYVWILSLAQGDEIRFTCFQNHSFKVTVKVLKKQQVKLMIHFLPSLAEFQEAAGLYMMEKISLVINTCWKKAIILVCLQWDARLEQLSSLFVL*MLNFLNQQLFSLKEKTSKEKRLNLMQKLSISDPWDSTHKYALFRLLVAYGLLMNMAVTEGDSSYCHLQKYLIGMNSVAVAK*VLYDLLFRSEFISDFETKQQGYSCQPMET*RI*SF*GYRSWRMSGPMIRFGSIKKDVSNAG*QKTAA*RLWAAW*HLAPS*AWPWTRMLTASSGA*SPMAGFTAS*SQI*F*TLKGAHSMIKITLSSTLSAKRSLHKCGKPWSYIP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 107210439 FALSE 106511430 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29038 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 439 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 15 21 15 6.85 ONLY_REF_SPLICE YES_LDAS 0.2838 GT 1.8295 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29039 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 445 TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38428548:+ chr17:36575523-36668621:+ chr17:36584792:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24872063:- chr10:25137543-25241535:- chr10:25160992:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr10] 14 4 14 1.56 ONLY_REF_SPLICE YES_LDAS 0.2021 GT 1.2419 AG 1.9656 ENST00000622683.5 1-63 ENST00000320152.11 340-678 chr17|+|[0]38428486-38428548[2]<==>chr10|-|[2]24849844-24849891[0]|[2]24851388-24851464[1]|[0]24855318-24855364[2]|[1]24856913-24856995[0]|[2]24858392-24858409[0]|[2]24871998-24872063[0] atgaatggagtcgccttctgcctggtcgggatcccgccccgcccggagccccggcccccacagAATGACCAGTCCATGGGTGAGATGCAGATAATCGGAGGCGATGATCTTTCAACGCTGGCTGGAAAGAATGTTCTCATTGTTGAGGATGTTGTCGGAACTGGGAGGACCATGAAAGCACTACTCAGCAATATAGAGAAATACAAGCCCAACATGATTAAGGTAGCCAGTTTGTTGGTGAAGAGAACATCCAGAAGTGACGGCTTTAGACCTGACTATGCTGGATTTGAGATTCCAAACTTATTTGTGGTGGGATATGCCTTAGATTACAATGAATACTTCAGAGATCTGAATCACATATGCGTCATCAATGAGCACGGTAAAGAAAAATATCGAGTCTAA MNGVAFCLVGIPPRPEPRPPQNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29040 ARHGAP23::PRTFDC1 ENSG00000275832.5::ENSG00000099256.19 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 444 TRUE 827 TRUE 305 ARHGAP23 ENSG00000275832.5 protein_coding + + chr17:38419280-38512385:+ chr17:38419399:+ chr17:36575523-36668621:+ chr17:36575642:+ PRTFDC1 ENSG00000099256.19 protein_coding - - chr10:24848614-24952606:- chr10:24872063:- chr10:25137543-25241535:- chr10:25160992:- chr17:38448057 chr10:24914317 NA NA chr17:36604301 chr10:25203246 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr10] 14 4 14 1.56 ONLY_REF_SPLICE YES_LDAS 0.2021 GT 1.8256 AG 1.9656 ENST00000633445.2 1-9 ENST00000320152.11 340-678 chr17|+|[0]38419391-38419399[2]<==>chr10|-|[2]24849844-24849891[0]|[2]24851388-24851464[1]|[0]24855318-24855364[2]|[1]24856913-24856995[0]|[2]24858392-24858409[0]|[2]24871998-24872063[0] atggagcagAATGACCAGTCCATGGGTGAGATGCAGATAATCGGAGGCGATGATCTTTCAACGCTGGCTGGAAAGAATGTTCTCATTGTTGAGGATGTTGTCGGAACTGGGAGGACCATGAAAGCACTACTCAGCAATATAGAGAAATACAAGCCCAACATGATTAAGGTAGCCAGTTTGTTGGTGAAGAGAACATCCAGAAGTGACGGCTTTAGACCTGACTATGCTGGATTTGAGATTCCAAACTTATTTGTGGTGGGATATGCCTTAGATTACAATGAATACTTCAGAGATCTGAATCACATATGCGTCATCAATGAGCACGGTAAAGAAAAATATCGAGTCTAA MEQNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29041 IQCA1::KYNU ENSG00000132321.17::ENSG00000115919.15 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 441 FALSE NA FALSE NA IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236507257:- chr2:237232790-237416178:- chr2:237415900:- KYNU ENSG00000115919.15 protein_coding + + chr2:142877657-143055833:+ chr2:142918609:+ chr2:143635226-143813402:+ chr2:143676178:+ chr2:236501744,chr2:236501750 chr2:142894104,chr2:142894098 NA NA chr2:237410387,chr2:237410393 chr2:143651673,chr2:143651667 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Aminotran_5-PARTIAL|~170-377|4.1e-16^DegT_DnrJ_EryC1|222-256|5.2e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:93.27Mb] 14 13 14 13 ONLY_REF_SPLICE YES_LDAS 0.3506 GT 1.9329 AG 1.6402 ENST00000409907.8 1-11 ENST00000409512.5 170-1398 chr2|-|[1]236507257-236507267[0]<==>chr2|+|[1]142918609-142918729[1]|[2]142927659-142927741[0]|[1]142954810-142954871[2]|[0]142956203-142956274[2]|[0]142957641-142957715[2]|[0]142960624-142960770[2]|[0]142985084-142985182[2]|[0]142985948-142986021[1]|[2]143029627-143029679[0]|[1]143033236-143033321[2]|[0]143040428-143040658[2]|[0]143042047-143042172[2] atgtcgaacgcTTGATTTATCATTAGTGAATAAAGATGAAAATGCCATCTATTTCTTGGGAAATTCTCTTGGCCTTCAACCAAAAATGGTTAAAACATATCTTGAAGAAGAACTAGATAAGTGGGCCAAAATAGCAGCCTATGGTCATGAAGTGGGGAAGCGTCCTTGGATTACAGGAGATGAGAGTATTGTAGGCCTTATGAAGGACATTGTAGGAGCCAATGAGAAAGAAATAGCCCTAATGAATGCTTTGACTGTAAATTTACATCTTCTAATGTTATCATTTTTTAAGCCTACGCCAAAACGATATAAAATTCTTCTAGAAGCCAAAGCCTTCCCTTCTGATCATTATGCTATTGAGTCACAACTACAACTTCACGGACTTAACATTGAAGAAAGTATGCGGATGATAAAGCCAAGAGAGGGGGAAGAAACCTTAAGAATAGAGGATATCCTTGAAGTAATTGAGAAGGAAGGAGACTCAATTGCAGTGATCCTGTTCAGTGGGGTGCATTTTTACACTGGACAGCACTTTAATATTCCTGCCATCACAAAAGCTGGACAAGCGAAGGGTTGTTATGTTGGCTTTGATCTAGCACATGCAGTTGGAAATGTTGAACTCTACTTACATGACTGGGGAGTTGATTTTGCCTGCTGGTGTTCCTACAAGTATTTAAATGCAGGAGCAGGAGGAATTGCTGGTGCCTTCATTCATGAAAAGCATGCCCATACGATTAAACCTGCATTAGTGGGATGGTTTGGCCATGAACTCAGCACCAGATTTAAGATGGATAACAAACTGCAGTTAATCCCTGGGGTCTGTGGATTCCGAATTTCAAATCCTCCCATTTTGTTGGTCTGTTCCTTGCATGCTAGTTTAGAGATCTTTAAGCAAGCGACAATGAAGGCATTGCGGAAAAAATCTGTTTTGCTAACTGGCTATCTGGAATACCTGATCAAGCATAACTATGGCAAAGATAAAGCAGCAACCAAGAAACCAGTTGTGAACATAATTACTCCGTCTCATGTAGAGGAGCGGGGGTGCCAGCTAACAATAACATTTTCTGTTCCAAACAAAGATGTTTTCCAAGAACTAGAAAAAAGAGGAGTGGTTTGTGACAAGCGGAATCCAAATGGCATTCGAGTGGCTCCAGTTCCTCTCTATAATTCTTTCCATGATGTTTATAAATTTACCAATCTGCTCACTTCTATACTTGACTCTGCAGAAACAAAAAATTAG MSNA*FIISE*R*KCHLFLGKFSWPSTKNG*NIS*RRTR*VGQNSSLWS*SGEASLDYRR*EYCRPYEGHCRSQ*ERNSPNECFDCKFTSSNVIIF*AYAKTI*NSSRSQSLPF*SLCY*VTTTTSRT*H*RKYADDKAKRGGRNLKNRGYP*SN*EGRRLNCSDPVQWGAFLHWTAL*YSCHHKSWTSEGLLCWL*SSTCSWKC*TLLT*LGS*FCLLVFLQVFKCRSRRNCWCLHS*KACPYD*TCISGMVWP*TQHQI*DG*QTAVNPWGLWIPNFKSSHFVGLFLAC*FRDL*ASDNEGIAEKICFANWLSGIPDQA*LWQR*SSNQETSCEHNYSVSCRGAGVPANNNIFCSKQRCFPRTRKKRSGL*QAESKWHSSGSSSSL*FFP*CL*IYQSAHFYT*LCRNKKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29045 DNM1L::FGD4 ENSG00000087470.21::ENSG00000139132.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 443 FALSE NA FALSE NA DNM1L ENSG00000087470.21 protein_coding + + chr12:32679200-32745650:+ chr12:32679465:+ chr12:32832134-32898584:+ chr12:32832399:+ FGD4 ENSG00000139132.16 protein_coding + + chr12:32399558-32646050:+ chr12:32564137:+ chr12:32552492-32798984:+ chr12:32717071:+ chr12:32687049,chr12:32687047 chr12:32444479,chr12:32444474 NA NA chr12:32839983,chr12:32839981 chr12:32597413,chr12:32597408 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|8-59|2.2e-05^FtsK_SpoIIIE|17-46|3.2e-05^MMR_HSR1|27-62|6.4e-05^Dynamin_N-PARTIAL|28-102~|1.8e-59^Dynamin_M-PARTIAL|63-102~|0.65 DUF4162|273-311|0.98^RhoGEF|295-476|8.8e-51^BORCS8|390-417|0.21^FYVE_2|394-423|4^BORCS8|462-495|1^PH_5|508-542|0.097^PH|509-605|1.5e-17^IQ_SEC7_PH|521-608|1.9e-09^PH_13|521-616|1e-05^Mcp5_PH|525-603|0.00021^PH_16|543-606|0.00064^PH_5|562-602|0.0047^DUF4162|565-605|0.0097^PH_2|566-603|0.0034^PH_6|567-603|0.00036^BORCS8|574-631|0.0066^FYVE|639-703|2.5e-23^C1_1|644-680|0.00028^IBR|644-679|0.00045^FYVE_2|646-699|1.3e-08^zf-RING_UBOX|650-679|0.00016^zf-RING_5|650-699|0.0062^C1_1|694-705|1.8^IBR|694-708|3.9^zf-RING_UBOX|696-700|5.4^PH|703-725|6.3^PH|739-823|2.6e-12^DUF4162|763-820|1.9^PH_6|786-820|0.0043^IQ_SEC7_PH|788-818|3.3^PH_13|792-823|0.095^PH_2|792-820|0.085^PH_16|802-824|0.9 ["GUO2018CR_TCGA","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.03Mb];LOCAL_REARRANGEMENT:+:[33150] 11 11 11 11 ONLY_REF_SPLICE YES_LDAS 0.2858 GT 1.7968 AG 1.9656 ENST00000549701.6 1-102 ENST00000531134.7 11-2556 chr12|+|[0]32679364-32679465[2]<==>chr12|+|[1]32564137-32564289[0]|[1]32576266-32576449[1]|[2]32581960-32582467[2]|[0]32598497-32598586[2]|[0]32601278-32601423[1]|[2]32602161-32602317[2]|[0]32607957-32608095[0]|[1]32610776-32610834[2]|[0]32611137-32611283[2]|[0]32619698-32619870[1]|[2]32624422-32624452[2]|[0]32624976-32625068[2]|[0]32625654-32625779[2]|[0]32633549-32633689[2]|[0]32638655-32638795[2]|[0]32640276-32640533[2] atggaggcgctaattcctgtcataaacaagctccaggacgtcttcaacacggtgggcgccgacatcatccagctgcctcaaatcgtcgtagtgggaacgcagGCAGCAGTACCTGTCCAAAGATCGCTTTAGTTCCACCTTGCTCCACAAGCAGCACAACCACACTGGTTGGTGAGAATGTATCTGAAGAAGAGGCTCAGGGAATAAATGGGAACAGGCCAGCAAAACACTCAGCTGCAAGTCCAAAGCCACAAGTGCCTCCAAAGCCATTACACCTGCAGAATTCACCTTCGTCCAATATACACCAAACCCCCAGGCATAAAGCTTTACCTAGTGCAAAACCAAGGATGGAGGAAATTAAACCTGCCTCTGCTTCTTGTGTCTCAAAAGAAAAACCCAGTAAGGTATCAGATCTCATCAGTCGCTTTGAAGGAGGCAGCTCATTATCAAATTATAGTGATTTGAAGAAAGAGTCTGCTGTGAACCTAAATGCTCCTAGAACCCCAGGAAGGCATGGATTGACAACCACACCTCAACAAAAACTCCTCTCCCAGCACTTGCCACAGAGGCAGGGAAATGATACAGATAAGACTCAGGGTGCACAGACTTGTGTGGCCAACGGTGTAATGGCAGCACAAAACCAGATGGAATGTGAGGAGGAGAAAGCTGCCACTCTTAGCTCAGATACTTCTATTCAAGCTTCTGAACCCTTGCTTGATACGCACATAGTGAATGGAGAAAGAGATGAAACTGCCACAGCTCCTGCATCACCCACAACAGACAGCTGTGATGGAAATGCTTCTGACAGTAGCTACAGGACTCCAGGCATAGGCCCAGTGCTCCCCCTAGAAGAAAGAGGGGCAGAAACAGAAACCAAGGTACAAGAGAGGGAAAATGGGGAAAGCCCTCTGGAACTGGAGCAGCTGGACCAGCACCATGAGATGAAGGAGACTAATGAGCAAAAACTTCACAAAATAGCCAATGAACTTTTGCTTACTGAAAGAGCTTATGTCAACCGACTTGACCTCTTAGATCAGGTATTTTATTGCAAACTGTTGGAAGAAGCAAACCGAGGCTCGTTTCCAGCAGAGATGGTGAATAAAATCTTTTCTAATATTTCATCAATAAATGCCTTCCATAGTAAATTCCTCTTGCCAGAGCTGGAGAAACGAATGCAAGAATGGGAAACTACTCCTAGAATTGGAGACATCCTTCAGAAATTGGCACCATTCCTTAAGATGTATGGAGAATATGTGAAAGGATTTGATAATGCAATGGAATTGGTTAAAAACATGACAGAACGTATTCCCCAGTTCAAATCAGTGGTTGAAGAAATTCAGAAACAGAAAATCTGTGGGAGCTTAACTTTGCAGCATCACATGCTAGAACCTGTTCAGCGGATTCCCCGGTATGAGATGCTCCTTAAGGACTATCTAAGGAAATTGCCTCCTGATTCCCTGGACTGGAATGATGCTAAAAAATCACTTGAAATTATATCTACAGCAGCAAGCCATTCTAATAGTGCAATAAGGAAAATGGAGAACCTAAAGAAACTCTTAGAGATTTATGAAATGTTGGGAGAAGAAGAAGACATTGTAAACCCTTCAAATGAACTAATAAAAGAAGGACAGATCCTCAAACTAGCTGCTCGGAACACTTCAGCACAAGAACGCTACCTTTTCTTATTCAACAACATGTTGCTGTACTGTGTGCCCAAATTCAGCTTGGTAGGCTCTAAATTCACAGTTCGAACCAGGGTTGGCATTGATGGAATGAAAATTGTAGAGACTCAAAATGAAGAATATCCACATACTTTCCAGGTGTCTGGGAAAGAGAGAACACTGGAACTGCAGGCCAGTTCTGCGCAAGACAAAGAAGAATGGATCAAGGCCCTTCAAGAAACCATCGATGCTTTTCATCAAAGGCATGAAACCTTCAGAAATGCAATTGCAAAGGATAATGACATTCACTCAGAGGTTTCTACTGCTGAGCTAGGGAAAAGAGCCCCAAGATGGATCCGAGATAATGAAGTGACAATGTGTATGAAATGTAAAGAACCTTTCAATGCACTGACACGAAGGAGGCATCATTGTCGAGCATGTGGATATGTGGTTTGTTGGAAATGCTCCGACTACAAAGCTCAACTTGAATATGATGGTGGTAAATTGAGCAAAGTTTGTAAAGACTGTTATCAAATCATAAGTGGATTCACAGACAGTGAAGAAAAGAAAAGAAAAGGAATTTTAGAGATTGAATCAGCAGAAGTATCTGGAAACAGTGTGGTGTGCAGCTTTCTTCAGTATATGGAGAAGTCAAAACCTTGGCAGAAAGCTTGGTGTGTGATCCCCAAGCAAGACCCTCTTGTGCTGTACATGTATGGTGCCCCCCAGGACGTCAGAGCCCAGGCCACCATTCCACTTCTGGGCTATGTGGTGGATGAAATGCCAAGGAGCGCAGACCTGCCACACAGTTTCAAACTGACCCAGTCTAAGTCCGTGCACAGCTTTGCTGCAGACAGTGAGGAACTGAAGCAGAAGTGGCTGAAAGTCATCCTTTTAGCTGTCACAGGTGAGACACCAGGTGGTCCAAATGAGCATCCAGCCACCTTGGATGATCATCCTGAACCTAAGAAAAAATCAGAATGCTGA MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQAAVPVQRSL*FHLAPQAAQPHWLVRMYLKKRLRE*MGTGQQNTQLQVQSHKCLQSHYTCRIHLRPIYTKPPGIKLYLVQNQGWRKLNLPLLLVSQKKNPVRYQISSVALKEAAHYQIIVI*RKSLL*T*MLLEPQEGMD*QPHLNKNSSPSTCHRGREMIQIRLRVHRLVWPTV*WQHKTRWNVRRRKLPLLAQILLFKLLNPCLIRT**MEKEMKLPQLLHHPQQTAVMEMLLTVATGLQA*AQCSP*KKEGQKQKPRYKRGKMGKALWNWSSWTSTMR*RRLMSKNFTK*PMNFCLLKELMSTDLTS*IRYFIANCWKKQTEARFQQRW*IKSFLIFHQ*MPSIVNSSCQSWRNECKNGKLLLELETSFRNWHHSLRCMENM*KDLIMQWNWLKT*QNVFPSSNQWLKKFRNRKSVGA*LCSITC*NLFSGFPGMRCSLRTI*GNCLLIPWTGMMLKNHLKLYLQQQAILIVQ*GKWRT*RNS*RFMKCWEKKKTL*TLQMN**KKDRSSN*LLGTLQHKNATFSYSTTCCCTVCPNSAW*ALNSQFEPGLALME*KL*RLKMKNIHILSRCLGKREHWNCRPVLRKTKKNGSRPFKKPSMLFIKGMKPSEMQLQRIMTFTQRFLLLS*GKEPQDGSEIMK*QCV*NVKNLSMH*HEGGIIVEHVDMWFVGNAPTTKLNLNMMVVN*AKFVKTVIKS*VDSQTVKKRKEKEF*RLNQQKYLETVWCAAFFSIWRSQNLGRKLGV*SPSKTLLCCTCMVPPRTSEPRPPFHFWAMWWMKCQGAQTCHTVSN*PSLSPCTALLQTVRN*SRSG*KSSF*LSQVRHQVVQMSIQPPWMIILNLRKNQNA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29048 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 428 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113351299:+ chr11:113185301-113254266:+ chr11:113222021:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exo70_N|4-62|0.00028^HEAT_2|20-39|0.29^HEAT|22-38|1.1^Arm|22-38|2.2^ARMC9_ARM|34-99|0.21^TPR_12|105-134|0.17^TPR_12|105-160|0.00047^TPR_1|106-127|0.00052^TPR_2|106-135|0.0025^TPR_17|107-126|5.6^TPR_14|108-148|0.038^TPR_8|112-126|2.3^TPR_16|112-132|0.15^TPR_11|113-153|1.3e-05^TPR_19|116-160|7e-06^TPR_6|117-128|9^TPR_1|142-168|1.2e-09^TPR_8|142-164|5.8e-05^TPR_12|142-210|5.4e-06^TPR_17|142-160|0.0058^TPR_2|143-164|1.8e-05^TPR_14|143-168|0.039^TPR_16|145-211|0.00012^TPR_6|146-160|0.27^Fis1_TPR_C|147-167|0.057^TPR_11|148-160|0.12^TPR_19|180-212|1.2^TPR_1|181-212|1.7e-06^TPR_2|181-212|1.7e-07^TPR_8|181-212|5.3e-07^TPR_14|182-212|0.076^TPR_11|182-196|0.22^TPR_6|182-212|0.00065^Fis1_TPR_C|185-212|0.0016^TPR_11|188-212|0.15^TPR_17|202-212|0.23^Exo70_N|206-230|1.3^Arm|349-374|0.93^HEAT|351-375|0.25^TPR_19|355-375|3.1^ARMC9_ARM|366-407|0.26^Arm|393-406|4^HEAT_2|431-446|1.9^ARMC9_ARM|433-476|0.2^Arm|433-465|0.62^HEAT|434-459|1.7^ARMC9_ARM|507-584|0.00013^Arm|527-551|0.027^Arm|555-567|2.5^Arm|563-579|2.1^ARMC9_ARM|601-673|0.021^HEAT_2|610-649|0.0035^HEAT|614-640|0.011^HEAT_2|616-694|5.1e-05^Arm|616-637|0.0025^HEAT|653-682|0.47^Arm|653-682|0.84 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.86Mb] 8 11 8 0.58 ONLY_REF_SPLICE YES_LDAS 0.1114 GT 1.9329 AG 1.6729 ENST00000483239.6 1-1326 ENST00000282251.10 1618-2685 chr11|+|[0]113316258-113316315[0]|[1]113323288-113323451[2]|[0]113323994-113324015[0]|[1]113324605-113324682[0]|[1]113325524-113325645[2]|[0]113329920-113329979[2]|[0]113334948-113335037[2]|[0]113338774-113338834[0]|[1]113339286-113339474[0]|[1]113340664-113340733[1]|[2]113341837-113341925[0]|[1]113344272-113344440[1]|[2]113350073-113350165[1]|[2]113351239-113351299[2]<==>chr11|-|[2]107326910-107327053[0]|[2]107329918-107330019[0]|[2]107334881-107334961[0]|[2]107336558-107336713[0]|[2]107348937-107349053[0]|[2]107353524-107353736[0]|[2]107390074-107390211[0]|[2]107392779-107392895[0] atggatgctgataaagagaaagatttgcagaaatttcttaaaaatgtggatgaaatctccaatttaattcaggagatgaattctgatgacccagttgtgcaacagaaagctgtcctggagacagaaaagagactactgcttatggaggaagaccaggaggaggatgaatgcaggaccaccttgaacaagactatgatcagtcctccacaaactgctatgaagagtgcagaagaaataaactcagaggccttcttggcatctgtggagaaggatgcaaaggaacgagccaagagaagaagggaaaacaaagtcttggcggatgccctaaaagaaaaagggaatgaagcatttgctgaaggcaattatgaaacagctatcctgcgctacagtgagggtttggagaagctgaaggacatgaaagtgctgtacaccaaccgagcccaggcttatatgaaacttgaggactatgagaaggcactggtggattgtgagtgggctctcaagtcattctcttttatgcagtgtgatgaaaaatgcacaaaagcatattttcacatgggaaaagccaacctggccctgaagaactacagtgtgtctagagagtgttataagaagatcttagaaataaaccccaagctgcaaacccaggtgaaaggttacctgaatcaagtagatcttcaggaaaaagcagaccttcaagaaaaggaagcccacgaactgctggattcaggaaagaacacagccgtgaccaccaagaacctcctggagaccctttccaagcctgaccagatccccttgttctatgctggggggattgagatcctgactgaaatgataaatgagtgcacagaacaaactttattcagaatgcacaatggatttagtatcatcagtgacaacgaggtcataagaaggtgtttttccacagcaggaaatgatgcagttgaagaaatggtctgtgtgtctgttctcaagctctggcaagcagtgtgcagcaggaacgaggaaaaccagcgtgtgctagtgatacaccatgacagggccaggctgttggccgccctcttgtcctccaaggtcctggccatccggcagcagagctttgccctgctgctgcatctcgcccagactgagagcggacggagcctgatcatcaaccaccttgacctgaccagattattggaagcgctggtgtcatttcttgatttctcggataaggaggccaacactgctatgggactgttcacagacttggctctggaagaaagattccaagtctggttccaggccaaccttccaggtgttctccctgcactcacaggcgttctgAATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATGGTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACAGCAGAAAATCAAAACAAGCTCTTTATGAGAATGGCATCTAAGTTTATGGGAAAAACAGATGGAGACTATTACACCCTGGATGACATGTTTGTCTCCAAAGCAGCTGAGAGAGAACGTCTTGGTGAAGAGGAAGAGAACCAAAGGAAAAAAGCTATTGCTGAGCATCGGAGTCTTGCTGCACAAATGGAAAAATGTCTGTATTGTTTTGACAGCTCTCAATTTCCCAAGCATCTTATTGTTGCAATAGGTGTTAAGGTTTATTTATGTTTACCCAACGTACGGTCTCTTACTGAGGGGCACTGCCTGATAGTCCCTTTGCAGCACCATAGAGCAGCTACTTTGTTGGATGAAGACATCTGGGAGGAGATCCAGATGTTCAGAAAATCATTGGTAAAGATGTTTGAAGATAAAGGATTAGACTGCATTTTTTTGGAAACTAATATGAGCATGAAGAAACAGTATCACATGGTTTATGAATGTATTCCTCTTCCCAAGGAAGTGGGTGACATGGCTCCCATCTATTTTAAGAAAGCCATAATGGAATCTGATGAAGAGTGGTCCATGAACAAGAAGTTGATAGATCTCTCTTCAAAAGATATCAGAAAGTCTGTACCCAGAGGGTTACCTTACTTCTCTGTGGATTTTGGCCTTCACGGAGGGTTTGCCCATGTCATTGAAGATCAGCACAAATTCCCTCATTACTTTGGAAAGGAAATCATAGGTGGGATGCTGGATATAGAACCAAGACTTTGGAGGAAAGGCATCCGAGAAAGCTTTGAGGATCAGAGGAAAAAAGCACTGCAGTTTGCTCAGTGGTGGAAACCATATGACTTCACCAAAAGTAAAAACTATTGA MDADKEKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISPPQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKSFSFMQCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSKVLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVLNEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMNKKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGMLDIEPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTKSKNY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29055 C2orf92::MGAT4A ENSG00000228486.11::ENSG00000071073.13 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA C2orf92 ENSG00000228486.11 protein_coding + + chr2:97664217-97703066:+ chr2:97675928:+ chr2:98280680-98319529:+ chr2:98292391:+ MGAT4A ENSG00000071073.13 protein_coding - - chr2:98619106-98731132:- chr2:98644053:- chr2:99235569-99347595:- chr2:99260516:- chr2:97685668,chr2:97685667 chr2:98645451,chr2:98645450 NA NA chr2:98302131,chr2:98302130 chr2:99261914,chr2:99261913 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF4834|6-79|0.00047^DUF6377|63-88|5.8e-06^DUF4834|183-219|0.0043^DUF6377|200-219|0.041 none none 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.1818 GT 1.7819 AG 1.7819 ENST00000627399.4 1-232 ENST00000414521.6 506-1272 chr2|+|[0]97669789-97669834[0]|[1]97674456-97674557[0]|[1]97675845-97675928[0]<==>chr2|-|[2]98621431-98621505[0]|[2]98625723-98625835[1]|[0]98635222-98635288[0]|[2]98636517-98636595[2]|[1]98639808-98640001[0]|[2]98640121-98640228[0]|[2]98643923-98644053[1] atgagcagagccatggccctcttctttgttctctgctggatccaagatgaaattgtgctccaagtgttttccaaggttccgtatgacccatcatttgatgaaacaagaacagcagtcagatccattacaaagagagacacacaaaaaagctattcccaacagaagagcttgaacaatgctgcatttgcatcaggttcaaatgagcgagaggaacatttggctaaaatatttgGTAAAATGTTTCAAGCGCCGGATCTTACTCTGATTGTAGAATTCATATTCATGTTTTACAAGGAGAAACCCATTGATTGGCTCCTGGACCATATTCTCTGGGTGAAAGTCTGCAACCCTGAAAAAGATGCAAAACATTGTGATAGACAGAAAGCAAATCTGCGAATTCGCTTCAGACCTTCCCTTTTCCAACATGTTGGTCTGCACTCATCACTATCAGGAAAAATCCAAAAACTCACGGATAAAGATTATATGAAACCATTACTTCTTAAAATCCATGTAAACCCACCTGCGGAGGTATCTACTTCCTTGAAGGTCTACCAAGGGCATACGCTGGAGAAAACTTACATGGGAGAGGATTTCTTCTGGGCTATCACACCGATAGCTGGAGACTACATCTTGTTTAAATTTGATAAACCAGTCAATGTAGAAAGTTATTTGTTCCATAGCGGCAACCAAGAACATCCTGGAGATATTCTGCTAAACACAACTGTGGAAGTTTTGCCTTTTAAGAGTGAAGGTTTGGAAATAAGCAAAGAAACCAAAGACAAACGATTAGAAGATGGCTATTTCAGAATAGGAAAATTTGAGAATGGTGTTGCAGAAGGAATGGTGGATCCAAGTCTCAATCCCATTTCAGCCTTTCGACTTTCAGTTATTCAGAATTCTGCTGTTTGGGCCATTCTTAATGAGCAGAGAGTTTTCTCGGGCTGGTGGCAGAAGTCAAGAGACAAAGCAGAAGGACCTCAGGCACCATTGCTGTTTTAA MSRAMALFFVLCWIQDEIVLQVFSKVPYDPSFDETRTAVRSITKRDTQKSYSQQKSLNNAAFASGSNEREEHLAKIFGKMFQAPDLTLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKPLLLKIHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEVLPFKSEGLEISKETKDKRLEDGYFRIGKFENGVAEGMVDPSLNPISAFRLSVIQNSAVWAILNEQRVFSGWWQKSRDKAEGPQAPLLF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29057 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679529:- chr6:106127253-106340916:- chr6:106127404:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 6 24 6 3.94 INCL_NON_REF_SPLICE YES_LDAS 0.1291 GT 1.8295 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29059 SOBP::PVT1 ENSG00000112320.12::ENSG00000249859.14 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 818 TRUE 297 SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128134201:+ chr8:128806772-129199347:+ chr8:129146447:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];INTERCHROMOSOMAL[chr6--chr8] 6 83 6 11.63 INCL_NON_REF_SPLICE YES_LDAS 0.2289 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29060 TTC12::CWF19L2 ENSG00000149292.17::ENSG00000152404.16 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 427 TRUE 819 TRUE 298 TTC12 ENSG00000149292.17 protein_coding + + chr11:113314579-113383544:+ chr11:113359461:+ chr11:113185301-113254266:+ chr11:113230183:+ CWF19L2 ENSG00000152404.16 protein_coding - - chr11:107326360-107457825:- chr11:107392895:- chr11:107197086-107328551:- chr11:107263621:- chr11:113361614,chr11:113361614,chr11:113361615 chr11:107401663,chr11:107401658,chr11:107401662 NA NA chr11:113232336,chr11:113232336,chr11:113232337 chr11:107272389,chr11:107272384,chr11:107272388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exo70_N|4-62|0.00028^HEAT_2|20-39|0.29^HEAT|22-38|1.1^Arm|22-38|2.2^ARMC9_ARM|34-99|0.21^TPR_12|105-134|0.17^TPR_12|105-160|0.00047^TPR_1|106-127|0.00052^TPR_2|106-135|0.0025^TPR_17|107-126|5.6^TPR_14|108-148|0.038^TPR_8|112-126|2.3^TPR_16|112-132|0.15^TPR_11|113-153|1.3e-05^TPR_19|116-160|7e-06^TPR_6|117-128|9^TPR_1|142-168|1.2e-09^TPR_8|142-164|5.8e-05^TPR_12|142-210|5.4e-06^TPR_17|142-160|0.0058^TPR_2|143-164|1.8e-05^TPR_14|143-168|0.039^TPR_16|145-211|0.00012^TPR_6|146-160|0.27^Fis1_TPR_C|147-167|0.057^TPR_11|148-160|0.12^TPR_19|180-212|1.2^TPR_1|181-212|1.7e-06^TPR_2|181-212|1.7e-07^TPR_8|181-212|5.3e-07^TPR_14|182-212|0.076^TPR_11|182-196|0.22^TPR_6|182-212|0.00065^Fis1_TPR_C|185-212|0.0016^TPR_11|188-212|0.15^TPR_17|202-212|0.23^Exo70_N|206-230|1.3^Arm|349-374|0.93^HEAT|351-375|0.25^TPR_19|355-375|3.1^ARMC9_ARM|366-407|0.26^Arm|393-406|4^HEAT_2|431-446|1.9^ARMC9_ARM|433-476|0.2^Arm|433-465|0.62^HEAT|434-459|1.7^ARMC9_ARM|507-584|0.00013^Arm|527-551|0.027^Arm|555-567|2.5^Arm|563-579|2.1^ARMC9_ARM|601-673|0.021^HEAT_2|610-649|0.0035^HEAT|614-640|0.011^HEAT_2|616-694|5.1e-05^Arm|616-637|0.0025^HEAT|653-682|0.47^Arm|653-682|0.84 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.86Mb] 5 50 5 2.9 ONLY_REF_SPLICE YES_LDAS 0.1026 GT 1.7819 AG 1.6729 ENST00000483239.6 1-1563 ENST00000282251.10 1618-2685 chr11|+|[0]113316258-113316315[0]|[1]113323288-113323451[2]|[0]113323994-113324015[0]|[1]113324605-113324682[0]|[1]113325524-113325645[2]|[0]113329920-113329979[2]|[0]113334948-113335037[2]|[0]113338774-113338834[0]|[1]113339286-113339474[0]|[1]113340664-113340733[1]|[2]113341837-113341925[0]|[1]113344272-113344440[1]|[2]113350073-113350165[1]|[2]113351239-113351299[2]|[0]113352070-113352207[2]|[0]113359363-113359461[2]<==>chr11|-|[2]107326910-107327053[0]|[2]107329918-107330019[0]|[2]107334881-107334961[0]|[2]107336558-107336713[0]|[2]107348937-107349053[0]|[2]107353524-107353736[0]|[2]107390074-107390211[0]|[2]107392779-107392895[0] atggatgctgataaagagaaagatttgcagaaatttcttaaaaatgtggatgaaatctccaatttaattcaggagatgaattctgatgacccagttgtgcaacagaaagctgtcctggagacagaaaagagactactgcttatggaggaagaccaggaggaggatgaatgcaggaccaccttgaacaagactatgatcagtcctccacaaactgctatgaagagtgcagaagaaataaactcagaggccttcttggcatctgtggagaaggatgcaaaggaacgagccaagagaagaagggaaaacaaagtcttggcggatgccctaaaagaaaaagggaatgaagcatttgctgaaggcaattatgaaacagctatcctgcgctacagtgagggtttggagaagctgaaggacatgaaagtgctgtacaccaaccgagcccaggcttatatgaaacttgaggactatgagaaggcactggtggattgtgagtgggctctcaagtcattctcttttatgcagtgtgatgaaaaatgcacaaaagcatattttcacatgggaaaagccaacctggccctgaagaactacagtgtgtctagagagtgttataagaagatcttagaaataaaccccaagctgcaaacccaggtgaaaggttacctgaatcaagtagatcttcaggaaaaagcagaccttcaagaaaaggaagcccacgaactgctggattcaggaaagaacacagccgtgaccaccaagaacctcctggagaccctttccaagcctgaccagatccccttgttctatgctggggggattgagatcctgactgaaatgataaatgagtgcacagaacaaactttattcagaatgcacaatggatttagtatcatcagtgacaacgaggtcataagaaggtgtttttccacagcaggaaatgatgcagttgaagaaatggtctgtgtgtctgttctcaagctctggcaagcagtgtgcagcaggaacgaggaaaaccagcgtgtgctagtgatacaccatgacagggccaggctgttggccgccctcttgtcctccaaggtcctggccatccggcagcagagctttgccctgctgctgcatctcgcccagactgagagcggacggagcctgatcatcaaccaccttgacctgaccagattattggaagcgctggtgtcatttcttgatttctcggataaggaggccaacactgctatgggactgttcacagacttggctctggaagaaagattccaagtctggttccaggccaaccttccaggtgttctccctgcactcacaggcgttctgaagacagatcccaaggtaagcagctcctcggctctgtgccagtgcattgccatcatgggaaacctcagtgctgagcccactacccgaagacacatggcggcctgtgaggaatttggggatggctgcttgagcctcctggccaggtgtgaggaggatgtggacctgttcagagaggttatctacacactcctgggactcatgatgaacctgtgtcttcaggctccctttgtctctgagAATGAAGACCAGCAAGAAGTAATCCTTGTCAGAACAGATCAGTCTGGAAGAGTATGGCCTGTGAACACACCCGGAAAATCTCTGGAATCACAAGGAGGAAGAAGAAAGAGACAGATGGTTTCAACCCATGAGGAAAGAGAAAGGGTCAGATACTTTCATGATGATGATAATCTAAGCCTAAATGATTTAGTCAAAAATGAAAAGATGGGAACAGCAGAAAATCAAAACAAGCTCTTTATGAGAATGGCATCTAAGTTTATGGGAAAAACAGATGGAGACTATTACACCCTGGATGACATGTTTGTCTCCAAAGCAGCTGAGAGAGAACGTCTTGGTGAAGAGGAAGAGAACCAAAGGAAAAAAGCTATTGCTGAGCATCGGAGTCTTGCTGCACAAATGGAAAAATGTCTGTATTGTTTTGACAGCTCTCAATTTCCCAAGCATCTTATTGTTGCAATAGGTGTTAAGGTTTATTTATGTTTACCCAACGTACGGTCTCTTACTGAGGGGCACTGCCTGATAGTCCCTTTGCAGCACCATAGAGCAGCTACTTTGTTGGATGAAGACATCTGGGAGGAGATCCAGATGTTCAGAAAATCATTGGTAAAGATGTTTGAAGATAAAGGATTAGACTGCATTTTTTTGGAAACTAATATGAGCATGAAGAAACAGTATCACATGGTTTATGAATGTATTCCTCTTCCCAAGGAAGTGGGTGACATGGCTCCCATCTATTTTAAGAAAGCCATAATGGAATCTGATGAAGAGTGGTCCATGAACAAGAAGTTGATAGATCTCTCTTCAAAAGATATCAGAAAGTCTGTACCCAGAGGGTTACCTTACTTCTCTGTGGATTTTGGCCTTCACGGAGGGTTTGCCCATGTCATTGAAGATCAGCACAAATTCCCTCATTACTTTGGAAAGGAAATCATAGGTGGGATGCTGGATATAGAACCAAGACTTTGGAGGAAAGGCATCCGAGAAAGCTTTGAGGATCAGAGGAAAAAAGCACTGCAGTTTGCTCAGTGGTGGAAACCATATGACTTCACCAAAAGTAAAAACTATTGA MDADKEKDLQKFLKNVDEISNLIQEMNSDDPVVQQKAVLETEKRLLLMEEDQEEDECRTTLNKTMISPPQTAMKSAEEINSEAFLASVEKDAKERAKRRRENKVLADALKEKGNEAFAEGNYETAILRYSEGLEKLKDMKVLYTNRAQAYMKLEDYEKALVDCEWALKSFSFMQCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHELLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTLFRMHNGFSIISDNEVIRRCFSTAGNDAVEEMVCVSVLKLWQAVCSRNEENQRVLVIHHDRARLLAALLSSKVLAIRQQSFALLLHLAQTESGRSLIINHLDLTRLLEALVSFLDFSDKEANTAMGLFTDLALEERFQVWFQANLPGVLPALTGVLKTDPKVSSSSALCQCIAIMGNLSAEPTTRRHMAACEEFGDGCLSLLARCEEDVDLFREVIYTLLGLMMNLCLQAPFVSENEDQQEVILVRTDQSGRVWPVNTPGKSLESQGGRRKRQMVSTHEERERVRYFHDDDNLSLNDLVKNEKMGTAENQNKLFMRMASKFMGKTDGDYYTLDDMFVSKAAERERLGEEEENQRKKAIAEHRSLAAQMEKCLYCFDSSQFPKHLIVAIGVKVYLCLPNVRSLTEGHCLIVPLQHHRAATLLDEDIWEEIQMFRKSLVKMFEDKGLDCIFLETNMSMKKQYHMVYECIPLPKEVGDMAPIYFKKAIMESDEEWSMNKKLIDLSSKDIRKSVPRGLPYFSVDFGLHGGFAHVIEDQHKFPHYFGKEIIGGMLDIEPRLWRKGIRESFEDQRKKALQFAQWWKPYDFTKSKNY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29062 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 440 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679491:- chr6:106127253-106340916:- chr6:106127366:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 5 24 5 3.94 ONLY_REF_SPLICE YES_LDAS 0.1161 GT 1.9329 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29065 SOBP::PRDM1 ENSG00000112320.12::ENSG00000057657.17 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 450 FALSE NA FALSE NA SOBP ENSG00000112320.12 protein_coding + + chr6:107490106-107661306:+ chr6:107506427:+ chr6:107811310-107982510:+ chr6:107827631:+ PRDM1 ENSG00000057657.17 protein_coding + + chr6:105993463-106109939:+ chr6:106088201:+ chr6:106441338-106557814:+ chr6:106536076:+ chr6:107509221,chr6:107509081 chr6:106035453,chr6:106035556 NA NA chr6:107830425,chr6:107830285 chr6:106483328,chr6:106483431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SOBP|120-136|0.63^zf-FCS|147-180|1.9e-07^SOBP|151-179|0.075^SOBP-PARTIAL|224-421~|6.5e-118^zf-FCS|225-258|2.5e-05 PRDM2_PR|94-210|4e-49^SET|99-200|5.4e-16^zf-C2HE|566-597|2e-05^zf-H2C2_2|573-585|0.0076^zf-C2H2_jaz|574-595|0.00079^zf-C2H2|575-597|1.6e-08^zf-C2H2_4|575-597|1.5e-05^zf-C2H2_6|575-598|3.1e-05^zf-met|575-595|0.0086^STL11_N|578-638|0.043^zf-H2C2_2|589-614|3.3e-10^zf-C2HE|601-623|0.0036^zf-C2H2|603-625|2.1e-07^zf-C2H2_4|603-625|0.00016^zf-C2H2_6|603-617|0.0017^zf-C2H2_jaz|603-622|0.0016^zf-met|603-622|0.0014^zf-H2C2_2|617-642|6.3e-10^zf-C2HE|629-653|0.006^zf-C2H2|631-653|1.9e-07^zf-C2H2_4|631-653|1e-05^zf-C2H2_6|631-654|4.8e-07^zf-C2H2_jaz|631-651|2.2e-06^zf-met|632-651|9.7e-06^STL11_N|635-696|0.00027^zf-H2C2_2|645-670|5.7e-11^zf-C2HE|656-677|0.0048^zf-C2H2|659-681|5.7e-06^zf-C2H2_4|659-681|0.00097^zf-C2H2_6|659-681|0.031^zf-met|659-669|0.13^zf-C2H2_jaz|660-668|3.6^zf-H2C2_2|673-696|3.3e-06^zf-C2HE|684-708|0.099^zf-C2H2|687-707|0.0015^zf-C2H2_4|687-707|0.035^zf-C2H2_6|687-696|0.067^zf-C2H2_jaz|687-708|0.58^zf-met|689-708|6.9 ["PRDM1:Oncogene","PRDM1:FoundationOne_panel","PRDM1:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.38Mb] 4 4 4 4 ONLY_REF_SPLICE YES_LDAS 0.1038 GT 1.7819 AG 1.8892 ENST00000317357.10 1-421 ENST00000369096.9 43-2478 chr6|+|[0]107490617-107490712[2]|[0]107503657-107503795[0]|[1]107506242-107506427[0]<==>chr6|+|[0]106088201-106088449[2]|[0]106095615-106095734[2]|[0]106099300-106099552[0]|[1]106104825-106105933[2]|[0]106106371-106106499[2]|[0]106106911-106107486[2] atggcagaaatggagaaagaagggagacctcccgaaaataaacggagcaggaagccggctcacccagtgaaaagggagatcaatgaggagatgaagaactttgcagaaaacaccatgaatgaactccttggctggtatggctatgataaggttgaattaaaagatggtgaggatattgaattcaggagctaccctacagatggggagagccggcagcacatttctgttctcaaagaaaattctttgccaaaaccaaaattacccgaggacagtgttatttcaccatacaatataagcacaggctattcagggcttgccactggaaatggactcagtgactcacctgcagggtcaaaggatcatggcagtgtgcccattattgtacctttaattccaccacctttcataaagccaccagcagGCTGCCCCCAAGTGTAACTCCAGCACTGTGAGGTTTCAGGGATTGGCAGAGGGGACCAAGGGGACCATGAAAATGGACATGGAGGATGCGGATATGACTCTGTGGACAGAGGCTGAGTTTGAAGAGAAGTGTACATACATTGTGAACGACCACCCCTGGGATTCTGGTGCTGATGGCGGTACTTCGGTTCAGGCGGAGGCATCCTTACCAAGGAATCTGCTTTTCAAGTATGCCACCAACAGTGAAGAGGTTATTGGAGTGATGAGTAAAGAATACATACCAAAGGGCACACGTTTTGGACCCCTAATAGGTGAAATCTACACCAATGACACAGTTCCTAAGAACGCCAACAGGAAATATTTTTGGAGGATCTATTCCAGAGGGGAGCTTCACCACTTCATTGACGGCTTTAATGAAGAGAAAAGCAACTGGATGCGCTATGTGAATCCAGCACACTCTCCCCGGGAGCAAAACCTGGCTGCGTGTCAGAACGGGATGAACATCTACTTCTACACCATTAAGCCCATCCCTGCCAACCAGGAACTTCTTGTGTGGTATTGTCGGGACTTTGCAGAAAGGCTTCACTACCCTTATCCCGGAGAGCTGACAATGATGAATCTCACACAAACACAGAGCAGTCTAAAGCAACCGAGCACTGAGAAAAATGAACTCTGCCCAAAGAATGTCCCAAAGAGAGAGTACAGCGTGAAAGAAATCCTAAAATTGGACTCCAACCCCTCCAAAGGAAAGGACCTCTACCGTTCTAACATTTCACCCCTCACATCAGAAAAGGACCTCGATGACTTTAGAAGACGTGGGAGCCCCGAAATGCCCTTCTACCCTCGGGTCGTTTACCCCATCCGGGCCCCTCTGCCAGAAGACTTTTTGAAAGCTTCCCTGGCCTACGGGATCGAGAGACCCACGTACATCACTCGCTCCCCCATTCCATCCTCCACCACTCCAAGCCCCTCTGCAAGAAGCAGCCCCGACCAAAGCCTCAAGAGCTCCAGCCCTCACAGCAGCCCTGGGAATACGGTGTCCCCTGTGGGCCCCGGCTCTCAAGAGCACCGGGACTCCTACGCTTACTTGAACGCGTCCTACGGCACGGAAGGTTTGGGCTCCTACCCTGGCTACGCACCCCTGCCCCACCTCCCGCCAGCTTTCATCCCCTCGTACAACGCTCACTACCCCAAGTTCCTCTTGCCCCCCTACGGCATGAATTGTAATGGCCTGAGCGCTGTGAGCAGCATGAATGGCATCAACAACTTTGGCCTCTTCCCGAGGCTGTGCCCTGTCTACAGCAATCTCCTCGGTGGGGGCAGCCTGCCCCACCCCATGCTCAACCCCACTTCTCTCCCGAGCTCGCTGCCCTCAGATGGAGCCCGGAGGTTGCTCCAGCCGGAGCATCCCAGGGAGGTGCTTGTCCCGGCGCCCCACAGTGCCTTCTCCTTTACCGGGGCCGCCGCCAGCATGAAGGACAAGGCCTGTAGCCCCACAAGCGGGTCTCCCACGGCGGGAACAGCCGCCACGGCAGAACATGTGGTGCAGCCCAAAGCTACCTCAGCAGCGATGGCAGCCCCCAGCAGCGACGAAGCCATGAATCTCATTAAAAACAAAAGAAACATGACCGGCTACAAGACCCTTCCCTACCCGCTGAAGAAGCAGAACGGCAAGATCAAGTACGAATGCAACGTTTGCGCCAAGACTTTCGGCCAGCTCTCCAATCTGAAGGTCCACCTGAGAGTGCACAGTGGAGAACGGCCTTTCAAATGTCAGACTTGCAACAAGGGCTTTACTCAGCTCGCCCACCTGCAGAAACACTACCTGGTACACACGGGAGAAAAGCCACATGAATGCCAGGTCTGCCACAAGAGATTTAGCAGCACCAGCAATCTCAAGACCCACCTGCGACTCCATTCTGGAGAGAAACCATACCAATGCAAGGTGTGCCCTGCCAAGTTCACCCAGTTTGTGCACCTGAAACTGCACAAGCGTCTGCACACCCGGGAGCGGCCCCACAAGTGCTCCCAGTGCCACAAGAACTACATCCATCTCTGTAGCCTCAAGGTTCACCTGAAAGGGAACTGCGCTGCGGCCCCGGCGCCTGGGCTGCCCTTGGAAGATCTGACCCGAATCAATGAAGAAATCGAGAAGTTTGACATCAGTGACAATGCTGACCGGCTCGAGGACGTGGAGGATGACATCAGTGTGATCTCTGTAGTGGAGAAGGAAATTCTGGCCGTGGTCAGAAAAGAGAAAGAAGAAACTGGCCTGAAAGTGTCTTTGCAAAGAAACATGGGGAATGGACTCCTCTCCTCAGGGTGCAGCCTTTATGAGTCATCAGATCTACCCCTCATGAAGTTGCCTCCCAGCAACCCACTACCTCTGGTACCTGTAAAGGTCAAACAAGAAACAGTTGAACCAATGGATCCTTAA MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELKDGEDIEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPAGCPQV*LQHCEVSGIGRGDQGDHENGHGGCGYDSVDRG*V*REVYIHCERPPLGFWC*WRYFGSGGGILTKESAFQVCHQQ*RGYWSDE*RIHTKGHTFWTPNR*NLHQ*HSS*ERQQEIFLEDLFQRGASPLH*RL**REKQLDALCESSTLSPGAKPGCVSERDEHLLLHH*AHPCQPGTSCVVLSGLCRKASLPLSRRADNDESHTNTEQSKATEH*EK*TLPKECPKERVQRERNPKIGLQPLQRKGPLPF*HFTPHIRKGPR*L*KTWEPRNALLPSGRLPHPGPSARRLFESFPGLRDRETHVHHSLPHSILHHSKPLCKKQPRPKPQELQPSQQPWEYGVPCGPRLSRAPGLLRLLERVLRHGRFGLLPWLRTPAPPPASFHPLVQRSLPQVPLAPLRHEL*WPERCEQHEWHQQLWPLPEAVPCLQQSPRWGQPAPPHAQPHFSPELAALRWSPEVAPAGASQGGACPGAPQCLLLYRGRRQHEGQGL*PHKRVSHGGNSRHGRTCGAAQSYLSSDGSPQQRRSHESH*KQKKHDRLQDPSLPAEEAERQDQVRMQRLRQDFRPALQSEGPPESAQWRTAFQMSDLQQGLYSARPPAETLPGTHGRKAT*MPGLPQEI*QHQQSQDPPATPFWRETIPMQGVPCQVHPVCAPETAQASAHPGAAPQVLPVPQELHPSL*PQGSPERELRCGPGAWAALGRSDPNQ*RNREV*HQ*QC*PARGRGG*HQCDLCSGEGNSGRGQKRERRNWPESVFAKKHGEWTPLLRVQPL*VIRSTPHEVASQQPTTSGTCKGQTRNS*TNGSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE PR domain containing 1, with ZNF domain 1 Yes DLBCL leukaemia_lymphoma TSG large_deletion, nonsense, missense, frameshift, splice_site 29067 ZNF124::RABGAP1L ENSG00000196418.13::ENSG00000152061.24 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 446 FALSE NA FALSE NA ZNF124 ENSG00000196418.13 protein_coding - - chr1:247121975-247172020:- chr1:247159006:- chr1:247285277-247335322:- chr1:247322308:- RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174811832:+ chr1:174128548-174964445:+ chr1:174780970:+ chr1:247146327,chr1:247146327,chr1:247146329 chr1:174793693,chr1:174793688,chr1:174793686 NA NA chr1:247309629,chr1:247309629,chr1:247309631 chr1:174762831,chr1:174762826,chr1:174762824 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KRAB|12-53|4.3e-29^zf-C2H2|65-78|1.2^zf-C2H2_4|72-78|5.1^zf-H2C2_2|73-92|0.00025^C1_4|80-94|0.36^zf-C2H2_4|84-91|1.5^zf-C2H2_6|84-91|0.37^zf_UBZ|84-92|0.048^Zn-ribbon_8|84-91|0.26^zf-C2H2|86-91|0.57^zf-C2H2_jaz|86-91|2.3^XPA_N|86-92|0.35^zf-C2H2|95-102|2.1^zf-C2H2_4|95-107|0.37^Zn_ribbon_SprT|95-128|0.088^zf_UBZ|95-102|0.5^XPA_N|95-102|1.4^C1_4|95-144|0.00047^zf-C2H2_6|96-102|1.3^zf-C2H2_jaz|96-102|0.73^zf-H2C2_2|115-132|0.00032^zf-C2H2_6|121-132|0.00058^zf_UBZ|121-140|0.13^zf-C2H2_4|122-144|3e-05^Zn-ribbon_8|122-157|0.0021^XPA_N|122-128|3.8^zf-C2H2|124-144|9.3e-07^zf-C2H2_jaz|124-142|0.0018^zf-C2HC_2|124-142|0.049^zf-H2C2_2|138-158|1.1e-10^zf-C2H2|150-172|2.2e-06^zf-C2H2_4|150-172|0.00044^zf-C2H2_6|150-172|0.0017^Zn_ribbon_SprT|150-187|1.9e-06^zf-C2H2_jaz|150-158|0.31^zf_UBZ|150-159|0.069^XPA_N|151-162|0.0048^C1_4|151-188|0.00049^zf-C2HC_2|163-171|1.6^zf-H2C2_2|164-189|2.8e-13^zf-C2H2_6|177-200|5.2e-06^zf_UBZ|177-190|0.0029^zf-C2H2|178-200|3.2e-10^zf-C2H2_4|178-200|3.1e-07^zf-C2H2_jaz|178-199|8.2e-05^Zn-ribbon_8|178-213|0.0015^zf-C2HC_2|179-198|0.1^XPA_N|179-190|0.0048^zf-H2C2_2|192-216|4.6e-12^Zn_ribbon_SprT|198-217|0.0042^C1_4-PARTIAL|199-218~|0.062^zf-C2H2-PARTIAL|206-218~|3.1e-06^zf-C2H2_4-PARTIAL|206-218~|9.7e-05^zf-C2H2_6-PARTIAL|206-218~|0.041^zf-C2H2_jaz-PARTIAL|206-218~|0.043^zf_UBZ|206-215|0.05^Zn-ribbon_8-PARTIAL|206-218~|0.016^zf-C2HC_2|207-216|0.031^XPA_N|207-216|0.011^C1_4-PARTIAL|208-218~|8.3 ERM_helical-PARTIAL|~190-215|2.3e-06^ERM_helical-PARTIAL|~190-250|2.7^GAS-PARTIAL|~190-260|0.004^UPF0242-PARTIAL|~190-253|0.00049^DUF3452|203-254|2.6e-05^RabGAP-TBC|208-218|0.75^UPF0242|291-328|0.54^ERM_helical|297-334|0.024^GAS|299-341|0.0033 ["RABGAP1L:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:72.13Mb] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1168 GT 1.7968 AG 1.7465 ENST00000543802.3 1-218 ENST00000367687.5 190-1134 chr1|-|[1]247159006-247159066[1]|[0]247159687-247159813[0]|[2]247171848-247171877[0]<==>chr1|+|[0]174811832-174811960[2]|[0]174957457-174957549[2]|[0]174969277-174969387[2]|[0]174976078-174976182[2]|[0]174978807-174978890[2]|[0]174982834-174982905[2]|[0]174988641-174988838[2]|[0]174989849-174990001[2] atgtcgggacaccccggaagctgggaaatgaactcggttgcctttgaggatgtggctgtgaacttcacccaggaggagtgggctttgttggatccttcccagaagaatctctatagagacgtgatgcaggaaaccttcaggaatctggcttccataggaaacaaaggggaagaccagagcattgaagatcagtacaaaaattcttcaagaaatctaagACCTCAAAGGAAGACCTTCTGCAGGCTGATTTTGAAGGTGCTTTAAAGTTCTTTAGAGTTCAGCTTCCAAAGAGATACAGGGCAGAGGAAAATGCAAGAAGACTGATGGAGCAGGCTTGCAATATTAAAGTACCAACCAAGAAGCTGAAGAAATATGAGAAAGAATATCAGACAATGCGAGAGAGTCAGCTGCAACAGGAAGACCCAATGGATAGATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAGAATGATGACCTTGCCCATGAACTAGTAACAAGCAAAATTGCTCTACGGAATGACTTGGATCAGGCAGAAGACAAGGCAGATGTGTTGAATAAAGAGCTCCTTTTGACCAAACAGAGGCTGGTGGAGACTGAAGAGGAGAAGAGGAAGCAAGAGGAAGAGACTGCCCAGCTAAAAGAAGTCTTCAGGAAACAGCTAGAGAAGGCAGAATATGAAATAAAGAAGACTACAGCTATCATTGCTGAGTATAAACAGATCTGTTCGCAGTTGAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGGCAGAGAGGACCAGGGAATTGAAACAGATGATGAGAAGGACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGGAACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAAGTGTAAAATTCAGGAACTTGAACATCAGAGAGGAGCCCTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACGGCCACGGGCACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCACCCAAGGAGAGCACATAG MSGHPGSWEMNSVAFEDVAVNFTQEEWALLDPSQKNLYRDVMQETFRNLASIGNKGEDQSIEDQYKNSSRNLRPQRKTFCRLILKVL*SSLEFSFQRDTGQRKMQED*WSRLAILKYQPRS*RNMRKNIRQCERVSCNRKTQWIDTRGRTEDYRRPA*GWNKRMMTLPMN**QAKLLYGMTWIRQKTRQMC*IKSSF*PNRGWWRLKRRRGSKRKRLPS*KKSSGNS*RRQNMK*RRLQLSLLSINRSVRS*VPGWRNSKQPARRSWKW*RVR*WHANTAVTFSARRVL*N*QPQAERTRELKQMMRRTHLRSS*ERWNWNWHKPNCSWWRPSVKFRNLNIREEPL*MKSKLRKTLGLAKP*TLSKRPRAPSHCSQHRSPSHPRRAH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29069 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 438 TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105769595:- chr6:106127253-106340916:- chr6:106217470:- chr8:128125793,chr8:128125792,chr8:128125790,chr8:128141394,chr8:128141394,chr8:128125793,chr8:128125789,chr8:128125794 chr6:105796225,chr6:105796225,chr6:105796216,chr6:105796064,chr6:105796076,chr6:105796224,chr6:105796224,chr6:105796201 NA NA chr8:129138039,chr8:129138038,chr8:129138036,chr8:129153640,chr8:129153640,chr8:129138039,chr8:129138035,chr8:129138040 chr6:106244100,chr6:106244100,chr6:106244091,chr6:106243939,chr6:106243951,chr6:106244099,chr6:106244099,chr6:106244076 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 4 27 4 7.59 INCL_NON_REF_SPLICE YES_LDAS 0.1505 GT 1.8295 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29071 PVT1::ENSG00000284999 ENSG00000249859.14::ENSG00000284999.1 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 824 TRUE 302 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ ENSG00000284999 ENSG00000284999.1 lncRNA - - chr6:105679378-105893041:- chr6:105679529:- chr6:106127253-106340916:- chr6:106127404:- chr8:128141394,chr8:128141394,chr8:127845184,chr8:128125793,chr8:128125789,chr8:128125794,chr8:128125793,chr8:128125792,chr8:128125790 chr6:105796064,chr6:105796076,chr6:105703826,chr6:105796224,chr6:105796224,chr6:105796201,chr6:105796225,chr6:105796225,chr6:105796216 NA NA chr8:129153640,chr8:129153640,chr8:128857430,chr8:129138039,chr8:129138035,chr8:129138040,chr8:129138039,chr8:129138038,chr8:129138036 chr6:106243939,chr6:106243951,chr6:106151701,chr6:106244099,chr6:106244099,chr6:106244076,chr6:106244100,chr6:106244100,chr6:106244091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 3 28 3 5.39 INCL_NON_REF_SPLICE YES_LDAS 0.109 GT 1.9899 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29075 PDSS2::QRSL1 ENSG00000164494.12::ENSG00000130348.11 CORL311 SRR8615428 SRR8639226 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 449 FALSE NA FALSE NA PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107458990:- chr6:107473766-107780768:- chr6:107780194:- QRSL1 ENSG00000130348.11 protein_coding + + chr6:106629578-106668417:+ chr6:106640349:+ chr6:107077453-107116292:+ chr6:107088224:+ chr6:107213434,chr6:107213443,chr6:107213434 chr6:106630237,chr6:106630237,chr6:106630266 NA NA chr6:107534638,chr6:107534647,chr6:107534638 chr6:107078112,chr6:107078112,chr6:107078141 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame polyprenyl_synt-PARTIAL|110-296~|2e-20 Amidase-PARTIAL|~25-488|5.8e-131 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.48Mb] 1 8 1 8 ONLY_REF_SPLICE YES_LDAS 0.1169 GT 1.8892 AG 1.8256 ENST00000369037.9 1-296 ENST00000369046.8 25-1587 chr6|-|[1]107458990-107459285[0]<==>chr6|+|[0]106640349-106640508[0]|[1]106640823-106640921[0]|[1]106642994-106643090[1]|[2]106649025-106649201[1]|[2]106652209-106652384[0]|[1]106652467-106652582[2]|[0]106654730-106654922[0]|[1]106655615-106655732[1]|[2]106662980-106663185[0]|[1]106665782-106666002[2] atgaactttcggcagctgctgttgcacttgccacgttatcttggagcctcgggttccccgcgtcgcctgtggtggtccccgtccctcgacaccatctcctcggtgggctcttggcgtggtcggtcctccaagtccccggcccactggaatcaggtagtgtcagaggcggagaagatcgtggggtaccccacgtccttcatgagccttcgctgcctgctgagcgacgagctcagcaacatcgctatgcaggtgcggaagctggtgggcactcagcaccctctgcttaccacagccagGTTTCTGCGGCACTGAAACAAGGCCAAATTACACCAACAGAGCTCTGTCAAAAATGTCTCTCTCTTATCAAGAAGACCAAGTTTCTAAATGCCTACATTACTGTGTCAGAAGAGGTGGCCTTAAAACAAGCTGAAGAATCAGAAAAGAGATATAAGAATGGACAGTCACTTGGGGATTTAGATGGAATTCCTATTGCAGTAAAAGACAATTTCAGCACTTCTGGCATTGAGACAACATGTGCATCAAATATGCTGAAAGGTTATATACCACCTTATAATGCTACAGTAGTTCAGAAGTTGTTGGATCAGGGAGCTCTACTAATGGGAAAAACAAATTTAGATGAGTTTGCTATGGGATCTGGGAGCACAGATGGTGTATTTGGACCAGTTAAAAACCCCTGGAGTTATTCAAAACAATATAGAGAAAAGAGGAAGCAGAATCCCCACAGCGAGAATGAAGATTCAGACTGGCTGATAACTGGAGGAAGCTCAGGTGGGAGTGCAGCTGCTGTATCGGCGTTCACATGCTACGCGGCTTTAGGATCAGATACAGGAGGATCGACCAGAAATCCTGCTGCCCACTGTGGGCTTGTTGGTTTCAAACCAAGCTATGGCTTAGTTTCCCGTCATGGTCTCATTCCCCTGGTGAATTCGATGGATGTGCCAGGAATCTTAACCAGATGTGTGGATGATGCAGCAATTGTGTTGGGTGCACTGGCCGGACCTGACCCCAGGGACTCTACCACAGTACATGAACCTATTAATAAACCATTCATGCTTCCCAGTTTGGCAGATGTGAGCAAACTATGTATAGGAATTCCAAAGGAATATCTTGTACCGGAATTATCAAGTGAAGTACAGTCTCTTTGGTCCAAAGCTGCTGACCTCTTTGAGTCTGAGGGGGCCAAAGTAATTGAAGTATCCCTTCCTCACACCAGTTATTCAATTGTCTGCTACCATGTATTGTGCACATCAGAAGTGGCATCGAATATGGCAAGATTTGATGGGCTACAATATGGTCACAGATGTGACATTGATGTGTCCACTGAAGCCATGTATGCTGCAACCAGACGAGAAGGGTTTAATGATGTGGTGAGAGGAAGAATTCTCTCAGGAAACTTTTTCTTATTAAAAGAAAACTATGAAAATTATTTTGTCAAAGCACAGAAAGTGAGACGCCTCATTGCTAATGACTTTGTAAATGCTTTTAACTCTGGAGTAGATGTCTTGCTAACTCCCACCACCTTGAGTGAGGCAGTACCATACTTGGAGTTCATCAAAGAGGACAACAGAACCCGAAGTGCCCAGGATGATATTTTTACACAAGCTGTAAATATGGCAGGATTGCCAGCAGTGAGTATCCCTGTTGCACTCTCAAACCAAGGGTTGCCAATAGGACTGCAGTTTATTGGACGTGCGTTTTGTGACCAGCAGCTTCTTACAGTAGCCAAATGGTTTGAAAAACAAGTACAGTTTCCTGTTATTCAACTTCAAGAACTCATGGATGATTGTTCAGCAGTCCTTGAAAATGAAAAGTTAGCCTCTGTCTCTCTAAAACAGTAA MNFRQLLLHLPRYLGASGSPRRLWWSPSLDTISSVGSWRGRSSKSPAHWNQVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARFLRH*NKAKLHQQSSVKNVSLLSRRPSF*MPTLLCQKRWP*NKLKNQKRDIRMDSHLGI*MEFLLQ*KTISALLALRQHVHQIC*KVIYHLIMLQ*FRSCWIRELY*WEKQI*MSLLWDLGAQMVYLDQLKTPGVIQNNIEKRGSRIPTARMKIQTG**LEEAQVGVQLLYRRSHATRL*DQIQEDRPEILLPTVGLLVSNQAMA*FPVMVSFPW*IRWMCQES*PDVWMMQQLCWVHWPDLTPGTLPQYMNLLINHSCFPVWQM*ANYV*EFQRNILYRNYQVKYSLFGPKLLTSLSLRGPK*LKYPFLTPVIQLSATMYCAHQKWHRIWQDLMGYNMVTDVTLMCPLKPCMLQPDEKGLMMW*EEEFSQETFSY*KKTMKIILSKHRK*DASLLMTL*MLLTLE*MSC*LPPP*VRQYHTWSSSKRTTEPEVPRMIFLHKL*IWQDCQQ*VSLLHSQTKGCQ*DCSLLDVRFVTSSFLQ*PNGLKNKYSFLLFNFKNSWMIVQQSLKMKS*PLSL*NS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29077 IL1RAPL1::RADX ENSG00000169306.11::ENSG00000147231.14 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 453 FALSE NA FALSE NA IL1RAPL1 ENSG00000169306.11 protein_coding + + chrX:28587446-29956718:+ chrX:29668504:+ chrX:28605563-29974835:+ chrX:29686621:+ RADX ENSG00000147231.14 protein_coding + + chrX:106611930-106679439:+ chrX:106637760:+ chrX:105855160-105922669:+ chrX:105880990:+ chrX:29792193,chrX:29792190 chrX:106636943,chrX:106636937 NA NA chrX:29810310,chrX:29810307 chrX:105880173,chrX:105880167 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame I-set|38-54|4.1^ig|41-123|0.0046^Ig_2|41-130|2.1e-05^Ig_3|74-122|0.0015^Ig_6|74-132|3.7e-09^V-set|77-124|0.0072^Izumo-Ig|97-123|0.75^I-set|98-135|0.0004^ig|160-229|2.6e-06^Ig_3|176-217|7.2e-07^I-set|176-232|4.8e-06^Ig_2|176-233|1.8e-07^Ig_6|190-218|0.0039^Izumo-Ig|197-219|0.0035^V-set|198-234|4.9e-05^V-set_CD47|200-231|0.0037^I-set|249-349|2.8e-10^Ig_3|256-338|3.6e-10^V-set|256-342|0.0022^ig|257-343|1.3e-10^Ig_2|257-341|7.8e-07^Izumo-Ig|297-339|0.11^V-set_CD47|319-340|0.017^TIR|412-570|9.8e-25^TIR_2|425-510|2.1e-08^V-set_CD47|522-540|0.43 none none 75 22 75 22 ONLY_REF_SPLICE YES_LDAS 1.1121 GT 1.8062 AG 1.9329 ENST00000378993.6 1-778 ENST00000372548.9 1409-2568 chrX|+|[0]28789344-28789425[0]|[1]29282938-29283217[1]|[2]29396258-29396444[2]|[0]29399155-29399308[0]|[1]29668430-29668504[0]<==>chrX|+|[1]106637760-106637924[0]|[1]106639527-106639687[2]|[0]106640552-106640721[1]|[2]106648313-106648386[0]|[1]106662015-106662305[0]|[1]106669163-106669330[0]|[1]106678128-106678258[2] atgaaagctccgattccacacttgattctcttatacgctacttttactcagagtttgaaggttgtgaccaaaagaggctccgccgatggatgcactgactggtctatcgatatcaagaaatatcaagttttggtgggagagcctgttcgaatcaaatgtgcactcttttatggttatatcagaacaaattactcccttgcccaaagtgctggactcagtttgatgtggtacaaaagttctggtcctggagactttgaagagccaatagcctttgacggaagtagaatgagcaaagaagaagactccatttggttccggccaacattgctacaggacagtggtctctacgcctgtgtcatcagaaactccacttactgtatgaaagtatccatctcactgacagtgggtgaaaatgacactggactctgctataattccaagatgaagtattttgaaaaagctgaacttagcaaaagcaaggaaatttcatgccgtgacatagaggattttctactgccaaccagagaacctgaaatcctttggtacaaggaatgcaggacaaaaacatggaggccaagtattgtattcaaaagagatactctgcttataagagaagtcagagaagatgacattggaaattatacctgtgaattaaaatatggaggctttgttgtgagaagaactactgaattaactgttacagcccctctgactgataagccacccaagcttttgtatcctatggaaagtaaactgacaattcaggagacccagctggGTCATAGAGGCCAGCCGTATACGTATGATGCCAAGGTAAAAAACTTTATTCAATGGATTAGAACAAAGTCTGATTCCGGGGAACAGAAGAATATGGTTATTGGTGGATATTACCCCTATCCACCAGTGCCAGAGACATTTTCCAAGTATAGTAGTTCTATTAAAGTTGAGTCGCTCTTGACAGCTATAAGTGAAGTCAGGAAGGAGATTGAAGACTTGCAGTATAGGGAACAAAAGCGCATTGCAATTCAGGGGATAATTACTGCTATAAAGTATATCCCCCATAGCAGTGCGACTGAAAGTGCCTCAGCATCAGAAACACTTCGGAATGCTAACAGACCCTCGACCTCTCAAGCAGCTAGAGTAGAAATTCAAGAAAGAAATGGTAAACGGCATCAAGATGATGAGCCTGTGAATTCTCAGTATTTCCAAACTACATCTACAAATTTAAGTCTGAGCAATAAAATAAGAATTCTTCAAGGCCCACACGCTAATCCAGTTGCTGTACCTCAACCAGGAGCTTCTGTACAAACAAAGGGAATTAAACCGGGCATGCCAAGCATCTTCAACCGTCGAGCAAATATAAATGCTAATCTGCAAGGGAAAGCCAGAAAAACTATAAGTGATAGGTGGGAGAGTCAGCTGTGGAGAGAGAAAAAGTTTGGCTTAATAGATCACCTACACTACAGCCGTGTTTATCCTGAAAGTATTCCACGGAAATTTATGTTTGAACACAGAAAGTTTCTTAGTGACCAGTATAATTCTCAGCCTGCGAAATATGTACCACCAGAAGGAAGGCCCCCAAAACTTGATGATTTTAAGAGCGCCCGAAGCCTTGGACATTTTGAAGTAACCATACTAGGTCTGAACCATGAGATAGCAATCGATGTTGCTTTCCTACCCATGTATTGTCCAGAAGATATTCGAACATCTCAAATAGACACACTGTTGACCTCCATGAATTACAGCTGTGCATATCCACAGGACACAACTGGAAATGACCGATTGCCAGGTCCAAGAGCGGTTGCAGGTGATATTATAAAAGCAGCAACTGAACTGGATAGAGTGCATATCGTCGGTATCTTGGATATCTGTAATTTGGGTAATAATAAAGTGGAAGTCTATTTGCACAAGATTTATAGTCCAGAGAATACTTCTTAA MKAPIPHLILLYATFTQSLKVVTKRGSADGCTDWSIDIKKYQVLVGEPVRIKCALFYGYIRTNYSLAQSAGLSLMWYKSSGPGDFEEPIAFDGSRMSKEEDSIWFRPTLLQDSGLYACVIRNSTYCMKVSISLTVGENDTGLCYNSKMKYFEKAELSKSKEISCRDIEDFLLPTREPEILWYKECRTKTWRPSIVFKRDTLLIREVREDDIGNYTCELKYGGFVVRRTTELTVTAPLTDKPPKLLYPMESKLTIQETQLGHRGQPYTYDAKVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPSIFNRRANINANLQGKARKTISDRWESQLWREKKFGLIDHLHYSRVYPESIPRKFMFEHRKFLSDQYNSQPAKYVPPEGRPPKLDDFKSARSLGHFEVTILGLNHEIAIDVAFLPMYCPEDIRTSQIDTLLTSMNYSCAYPQDTTGNDRLPGPRAVAGDIIKAATELDRVHIVGILDICNLGNNKVEVYLHKIYSPENTS* FALSE TRUE hsa-mir-4666b chrX:29574278-29574358:+ TRUE hsa-mir-548an chrX:106639814-106639896:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29079 PPWD1::NLN ENSG00000113593.12::ENSG00000123213.23 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 454 FALSE NA FALSE NA PPWD1 ENSG00000113593.12 protein_coding + + chr5:65563236-65587549:+ chr5:65579613:+ chr5:64859063-64883376:+ chr5:64875440:+ NLN ENSG00000123213.23 protein_coding + + chr5:65722205-65871725:+ chr5:65809515:+ chr5:65018032-65167553:+ chr5:65105342:+ chr5:65581925,chr5:65581940,chr5:65581944,chr5:65581957,chr5:65581961,chr5:65581964,chr5:65581970 chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052,chr5:65806052 NA NA chr5:64877752,chr5:64877767,chr5:64877771,chr5:64877784,chr5:64877788,chr5:64877791,chr5:64877797 chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879,chr5:65101879 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NBCH_WD40|84-119|0.0033^WD40|89-116|4.5e-05^ANAPC4_WD40|98-173|0.0038^Ge1_WD40|103-117|0.006^NBCH_WD40|124-164|0.00028^WD40|125-161|1.1e-05^WD40|214-250|0.055^WD40|284-307|1e-06^ANAPC4_WD40|284-319|5e-05^Ge1_WD40|285-308|0.0079^Ge1_WD40|312-341|0.084^ANAPC4_WD40|360-400|0.83^Ge1_WD40|378-404|0.63^Pro_isomerase|496-645|1.7e-53 none ["Larsson_TCGA","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.13Mb] 56 22 56 22 ONLY_REF_SPLICE YES_LDAS 0.8943 GT 1.4295 AG 1.9656 ENST00000261308.10 1-1350 ENST00000511299.5 658-1245 chr5|+|[0]65563311-65563506[0]|[1]65567513-65567615[1]|[2]65569632-65569732[0]|[1]65569878-65569998[1]|[2]65571839-65572286[2]|[0]65576879-65577069[1]|[2]65579424-65579613[2]<==>chr5|+|[0]65809515-65809701[0]|[1]65810037-65810165[0]|[1]65812255-65812391[2]|[0]65822781-65822915[2] atggcggcggaaagtggtagcgattttcagcagagacgtagaaggcgccgggacccggaggaaccggaaaaaacagaactcagcgaaagagagctggcagtagcagtggcggtgtcccaggagaacgatgaggagaacgaagagcgctgggttggacctttacctgtggaggcaacactggccaagaagaggaaagtcttagagtttgaaagagtctatcttgataatctccccagtgcatccatgtatgagcgcagttacatgcatagagatgttatcacccatgtggtatgcaccaaaacagattttattattactgccagtcatgatggacatgtcaagttctggaaaaaaatagaagagggaattgaatttgttaaacattttcgtagtcacctgggagttattgagagtattgcagttagctctgagggagcattgttctgttctgtgggtgatgataaagcaatgaaggtgtttgatgtagtgaactttgacatgatcaacatgctgaaacttggctattttcctggacagtgtgagtggatctattgcccaggggatgcaatttcttcagttgctgcttccgaaaagagtacaggaaaaattttcatttatgatggccgaggagataaccagccacttcatatttttgacaaactccatacatcacctcttactcagatacggctaaacccagtttacaaagcagtagtgtcttctgacaaatctgggatgattgaatactggactgggcctcctcatgaatataaattccccaaaaatgtgaactgggaatataaaactgacactgatttatatgaatttgccaagtgtaaggcttatccaaccagcgtatgtttttcaccagatgggaagaaaatagctactattggttctgatagaaaagttagaattttcagatttgtaactggaaaactcatgagagtctttgatgaatcactaagcatgtttactgaactgcaacagatgaggcaacagttaccagacatggaatttggccgacgaatggctgtagaacgtgagttggagaaggttgatgctgtaagattaattaatatagtttttgatgaaactggacacttcgtgctgtatggaacaatgctgggcattaaagttataaatgtagagacaaaccggtgtgtgcggattttaggcaaacaagaaaatattagagtgatgcaattggctttgttccaggggatagccaaaaagcatcgtgctgcaactactatagaaatgaaagcttctgaaaatcctgttcttcagaatattcaagctgacccaacaatagtctgtacatcattcaaaaagaatagattttatatgACTGATTTTGCACGATTTAGCGGAACAAATGTGGAAACTGACTTTGTAGAGGTGCCATCGCAAATGCTTGAAAATTGGGTGTGGGACGTCGATTCCCTCCGAAGATTGTCAAAACATTATAAAGATGGAAGCCCTATTGCAGACGATCTGCTTGAAAAACTTGTTGCTTCTAGGCTGGTCAACACAGGTCTTCTGACCCTGCGCCAGATTGTTTTGAGCAAAGTTGATCAGTCTCTTCATACCAACACATCGCTGGATGCTGCAAGTGAATATGCCAAATACTGCTCAGAAATATTAGGAGTTGCAGCTACTCCAGGCACAAATATGCCAGCTACCTTTGGACATTTGGCAGGGGGATACGATGGCCAATATTATGGATATCTTTGGAGTGAAGTATTTTCCATGGATATGTTTTACAGCTGTTTTAAAAAAGAAGGGATAATGAATCCAGAGGTTGGAATGAAATACAGAAACCTAATCCTGAAACCTGGGGGATCTCTGGACGGCATGGACATGCTCCACAATTTCTTGAAACGTGAGCCAAACCAAAAAGCGTTCCTAATGAGTAGAGGCCTGCATGCTCCGTGA MAAESGSDFQQRRRRRRDPEEPEKTELSERELAVAVAVSQENDEENEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTIVCTSFKKNRFYMTDFARFSGTNVETDFVEVPSQMLENWVWDVDSLRRLSKHYKDGSPIADDLLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNTSLDAASEYAKYCSEILGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFSMDMFYSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLHNFLKREPNQKAFLMSRGLHAP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 65579613 TRUE 65780179 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29080 DOCK4::IMMP2L ENSG00000128512.24::ENSG00000184903.10 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 455 FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111822362:- chr7:111366166-111846462:- chr7:111462418:- IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:110963565:- chr7:110302700-111202573:- chr7:110603621:- chr7:111820840,chr7:111820847 chr7:111083851,chr7:111083855 NA NA chr7:111460896,chr7:111460903 chr7:110723907,chr7:110723911 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SH3_2|3-49|6.5e-08^SH3_1|9-46|3.2e-06^DOCK_N|57-379|9.7e-94^DOCK-C2|185-200|2.9^DOCK-C2|254-292|0.27^DOCK-C2|384-568|1.4e-59^DHR-2_Lobe_A|660-691|0.7^DHR-2_Lobe_A|1215-1339|4.1e-11^DHR-2_Lobe_B|1398-1475|1.9e-17^DHR-2_Lobe_C|1525-1619|3.1e-22 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.16Mb] 35 13 35 13 ONLY_REF_SPLICE YES_LDAS 0.5504 GT 1.9656 AG 1.7819 ENST00000445943.5 1-3001 ENST00000450877.5 186-474 chr7|-|[1]111822362-111822456[0]|[2]111834588-111834686[0]|[2]111840763-111840870[0]|[2]111844763-111844897[0]|[2]111846999-111847126[1]|[0]111863372-111863564[0]|[2]111867984-111868154[0]|[2]111869574-111869655[2]|[1]111871990-111872090[0]|[2]111872269-111872352[0]|[2]111872467-111872564[1]|[0]111877030-111877186[0]|[2]111895612-111895718[1]|[0]111900374-111900536[0]|[2]111901677-111901801[1]|[0]111915779-111915904[1]|[0]111935540-111935628[2]|[1]111940110-111940242[1]|[0]111944811-111944871[0]|[2]111945717-111945798[2]|[1]111977132-111977283[0]|[2]111984306-111984390[2]|[1]111989015-111989163[0]|[2]111994135-111994231[2]|[1]111998448-111998503[0]|[2]112000494-112000534[1]|[0]112004048-112004131[1]<==>chr7|-|[2]110663602-110663721[0]|[2]110886593-110886695[2]|[1]110963500-110963565[2] ttattgccagtttccgaggaaccgttccatatggcctgtcattggaaattggagatacagttcagatcctggagaagtgtgatggctggtacagaggatttgccttaaaaaacccaaatatcaagggtatatttccttccagctacgttcacttgaaaaatgcctgtgtaaagaacaaaggacaatttgaaatggttattcccactgaagactctgttatcacagaaatgacatcaacattaagagactggggaaccatgtggaaacaactctatgtgcgtaatgaaggcgatctcttccaccggctgtggcacatcatgaatgaaatcctggacctgaggcggcaggtgctggtgggccacctcacccacgaccggatgaaggacgtgaagcgccacattactgcccggcttgactggggcaatgaacaactgggactggacctggtgcctaggaaagagtacgcaatggtggatccggaagacatcagcattactgagctctaccgattgatggaacatcgacatcggaagaaagacaccccggtgcaggccagcagtcaccacctctttgtccagatgaagagcctcatgtgttccaacctgggagaggagctggaggtcatcttctcactctttgacagtaaagagaaccggccaatcagtgagagatttttcttgaggctgaatagaaacgggcttcccaaagcccctgataaaccggaacgacattgctccctctttgtggatttgggcagcagtgagctaagaaaggacatttatatcaccgtgcacattatccgaatcggtcgaatgggagcaggagaaaaaaagaatgcctgtagtgtccagtaccgacgaccctttggctgtgcagttcttagcatcgctgacctgctaacaggagagacaaaggatgacctcattctgaaagtatacatgtgtaacacagagagtgagtggtaccaaatccatgagaacatcatcaaaaagctgaatgcacgttataacttgactggctccaatgcaggtttagcagtttccttacagctattgcacggagacattgaacaaatcagaagggaatattcatcagtattttctcatggagtatccataacaaggaagctgggattttcaaatattattatgcctggtgaaatgaggaatgatttatatatcactattgaaaggggagaatttgagaaaggagggaagagcgtggccagaaatgtggaagttacgatgttcattgtagacagtagtggccaaaccctgaaggattttatctccttcggctctggggagccaccagccagtgagtaccactcctttgtgctttaccataacaacagtcccaggtggtctgaactgctgaaacttcccattcctgtggataaattccggggtgcacacatccgcttcgagtttcggcattgttccacaaaggagaaaggagagaagaagttgtttgggttttcttttgtccctctgatgcaagaagatggtaggactcttccagatggcactcatgagctcatcgtgcataagtgtgaagaaaacacaaatcttcaggatactacccgctacctcaaacttcccttttccaagggcattttccttgggaataataatcaagccatgaaggccacaaaggagtccttttgtattacatcttttctctgttccacaaaactcacacaaaatggtgatatgcttgatcttttgaaatggagaacccacccagacaagatcactggctgtctctctaaattaaaagaaattgatggctcagagatagtaaagtttctgcaggatacactggataccttatttggaattttagatgaaaattcccaaaaatatgggtctaaagtgtttgattctttggttcacataataaatttgctgcaagatagcaaatttcatcattttaaacctgtaatggacacttacattgagagtcattttgctggggcacttgcatacagagatctcatcaaagtgctcaaatggtacgtggaccggatcacagaagcagagcggcaagagcatatccaggaggtgctgaaggcacaagaatacatttttaagtatatagttcaatctcgaaggctgttttcccttgccactggtgggcaaaacgaagaggagttccgctgctgcattcaggagcttctcatgtcagtccgtttctttctttcgcaagagagcaaagggtctggagcattatctcagtcacaggctgtgtttctgagctctttccctgccgtgtactcagaactgttgaagctctttgatgtccgggaagtagccaacttggtccaggacaccctgggcagtctgccgaccatcctgcatgtggatgattccctgcaggccatcaaactgcagtgcattggcaaaaccgtggaaagccagctttataccaacccagattcccgatacattcttctgcctgtcgtgttacatcacctccacattcacttgcaagaacagaaggacctgatcatgtgtgcacgtatccttagcaacgtattttgtcttatcaagaaaaatagctcagaaaaatctgtgctggaggaaatagatgtgatagtggccagcttgctggatattctgctgaggaccatattggagatcaccagccgacctcagccatccagctcagcaatgcggttccagttccaggatgtcactagaacaggctttctgaatagggagtcttcacatggcagtactacattgagcaccttttcagtctgtgcagacacatatggaaaagtgcccatgacaagtagacacactggggagtttgttgcttgtctcctgtccctattacgacaaatgacagatagacattatcaacagcttcttgatagttttaatacaaaggaagaactaagggatttcctgctgcagatatttactgtgttccgaatattgatacgcccggagatgtttccaaaggactggactgttatgcgcttggttgctaacaaGTCTCCTAAAAACCCAGAACAGAAGATCATTAAGAGAGTGATTGCTCTTGAAGGAGATATTGTCAGAACCATAGGACACAAAAACCGGTATGTCAAAGTCCCCCGTGGTCACATCTGGGTTGAAGGTGATCATCATGGACACAGTTTTGACAGTAATTCTTTTGGGCCGGTTTCCCTAGGACTTCTGCATGCCCATGCCACACATATCCTGTGGCCCCCAGAGCGCTGGCAGAAATTGGAATCTGTTCTTCCTCCAGAGCGCTTACCAGTACAGAGAGAAGAGGAATGA IASFRGTVPYGLSLEIGDTVQILEKCDGWYRGFALKNPNIKGIFPSSYVHLKNACVKNKGQFEMVIPTEDSVITEMTSTLRDWGTMWKQLYVRNEGDLFHRLWHIMNEILDLRRQVLVGHLTHDRMKDVKRHITARLDWGNEQLGLDLVPRKEYAMVDPEDISITELYRLMEHRHRKKDTPVQASSHHLFVQMKSLMCSNLGEELEVIFSLFDSKENRPISERFFLRLNRNGLPKAPDKPERHCSLFVDLGSSELRKDIYITVHIIRIGRMGAGEKKNACSVQYRRPFGCAVLSIADLLTGETKDDLILKVYMCNTESEWYQIHENIIKKLNARYNLTGSNAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSNIIMPGEMRNDLYITIERGEFEKGGKSVARNVEVTMFIVDSSGQTLKDFISFGSGEPPASEYHSFVLYHNNSPRWSELLKLPIPVDKFRGAHIRFEFRHCSTKEKGEKKLFGFSFVPLMQEDGRTLPDGTHELIVHKCEENTNLQDTTRYLKLPFSKGIFLGNNNQAMKATKESFCITSFLCSTKLTQNGDMLDLLKWRTHPDKITGCLSKLKEIDGSEIVKFLQDTLDTLFGILDENSQKYGSKVFDSLVHIINLLQDSKFHHFKPVMDTYIESHFAGALAYRDLIKVLKWYVDRITEAERQEHIQEVLKAQEYIFKYIVQSRRLFSLATGGQNEEEFRCCIQELLMSVRFFLSQESKGSGALSQSQAVFLSSFPAVYSELLKLFDVREVANLVQDTLGSLPTILHVDDSLQAIKLQCIGKTVESQLYTNPDSRYILLPVVLHHLHIHLQEQKDLIMCARILSNVFCLIKKNSSEKSVLEEIDVIVASLLDILLRTILEITSRPQPSSSAMRFQFQDVTRTGFLNRESSHGSTTLSTFSVCADTYGKVPMTSRHTGEFVACLLSLLRQMTDRHYQQLLDSFNTKEELRDFLLQIFTVFRILIRPEMFPKDWTVMRLVANKSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Prostate adenocarcinoma KIDNEY,LUNG,PROSTATE no_match 111846157,111846157,111846157 FALSE,FALSE,FALSE 110603621,110303777,111127397 TRUE,FALSE,FALSE PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29081 ARHGAP42::DLG2 ENSG00000165895.19::ENSG00000150672.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 456 FALSE NA FALSE NA ARHGAP42 ENSG00000165895.19 protein_coding + + chr11:100687288-100993941:+ chr11:100687832:+ chr11:100558019-100864672:+ chr11:100558563:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:83980642:- chr11:83166055-85339379:- chr11:83691685:- chr11:100713907,chr11:100713904 chr11:84003385,chr11:84003388 NA NA chr11:100584638,chr11:100584635 chr11:83714428,chr11:83714431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BAR_3|6-128|1.1e-38^BAR-PARTIAL|22-154~|3.8e-05^RhoGAP|58-94|0.22^BAR_3-PARTIAL|128-154~|1.8e-30 Guanylate_kin|700-876|2.6e-69 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:15.06Mb] 33 14 33 14 ONLY_REF_SPLICE YES_LDAS 0.5389 GT 1.6402 AG 1.8892 ENST00000524892.7 1-154 ENST00000648622.1 665-2673 chr11|+|[0]100687679-100687832[0]<==>chr11|-|[2]83459818-83459924[1]|[0]83462002-83462093[2]|[1]83466708-83466817[0]|[2]83469201-83469373[1]|[0]83471626-83471727[1]|[0]83472727-83472777[1]|[0]83484129-83484228[0]|[2]83532708-83532783[2]|[1]83541682-83541858[2]|[1]83633211-83633325[1]|[0]83786690-83786792[0]|[2]83833614-83833770[2]|[1]83874420-83874488[2]|[1]83930328-83930483[2]|[1]83962885-83963023[1]|[0]83965324-83965468[0]|[2]83980506-83980642[1] atggggctgcccactctggagttcagcgattcctacttggacagcccagatttcagggagcgcttgcagtgtcacgagattgagctggagcgaaccaacaagttcatcaaggagctcattaaggacggctctctgctcattggggcgttgaggaGTTTAGGCTTCAGTATTGCAGGAGGTGTGGGGAACCAACACATTCCTGGAGACAACAGCATTTATGTAACTAAAATTATAGATGGAGGAGCTGCACAAAAAGATGGAAGGTTGCAAGTAGGAGATAGACTACTAATGGTAAACAACTACAGTTTAGAAGAAGTAACACACGAAGAGGCAGTAGCAATATTAAAGAACACATCAGAGGTAGTTTATTTAAAAGTTGGCAAACCCACTACCATTTATATGACTGATCCTTATGGTCCACCTGATATTACTCACTCTTATTCTCCACCAATGGAAAACCATCTACTCTCTGGCAACAATGGCACTTTAGAATATAAAACCTCCCTGCCACCCATCTCTCCAGGAAGGTACTCACCAATTCCAAAGCACATGCTTGTTGACGACGACTACACCAGGCCTCCGGAACCTGTTTACAGCACTGTGAACAAACTATGTGATAAGCCTGCTTCTCCCAGGCACTATTCCCCTGTTGAGTGTGACAAAAGCTTCCTCCTCTCAGCTCCCTATTCCCACTACCACCTAGGCCTGCTACCTGACTCTGAGATGACCAGTCATTCCCAACATAGCACCGCAACTCGTCAGCCTTCAATGACTCTCCAACGGGCCGTCTCCCTGGAAGGAGAGCCTCGCAAGGTAGTCCTGCACAAAGGCTCCACTGGCCTGGGCTTCAACATTGTCGGTGGGGAAGATGGAGAAGGTATTTTTGTGTCCTTCATTCTGGCTGGTGGACCAGCAGACCTAAGTGGGGAGCTCCAGAGAGGAGACCAGATCCTATCGGTGAATGGCATTGACCTCCGTGGTGCATCCCACGAGCAGGCAGCTGCTGCACTAAAGGGGGCTGGACAGACAGTGACGATTATAGCACAATATCAACCTGAAGATTACGCTCGATTTGAGGCCAAAATCCATGACCTACGAGAGCAGATGATGAACCACAGCATGAGCTCCGGGTCCGGATCCCTGCGAACCAATCAGAAACGCTCCCTCTACGTCAGAGCCATGTTCGACTACGACAAGAGCAAGGACAGTGGGCTGCCAAGTCAAGGACTTAGTTTTAAATATGGAGATATTCTCCACGTTATCAATGCCTCTGATGATGAGTGGTGGCAAGCCAGGAGAGTCATGCTGGAGGGAGACAGTGAGGAGATGGGGGTCATCCCCAGCAAAAGGAGGGTGGAAAGAAAGGAACGTGCCCGATTGAAGACAGTGAAGTTTAATGCCAAACCTGGAGTGATTGATTCGAAAGGGTCATTCAATGACAAGCGTAAAAAGAGCTTCATCTTTTCACGAAAATTCCCATTCTACAAGAACAAGGAGCAGAGTGAGCAGGAAACCAGTGATCCTGAACGAGGACAAGAAGACCTCATTCTTTCCTATGAGCCTGTTACAAGGCAGGAAATAAACTACACCCGGCCGGTGATTATCCTGGGGCCCATGAAGGATCGGATCAATGACGACTTGATATCTGAATTCCCTGATAAATTTGGCTCCTGTGTGCCTCATACTACGAGGCCAAAGCGAGACTACGAGGTGGATGGCAGAGACTATCACTTTGTCATTTCCAGAGAACAAATGGAGAAAGATATCCAAGAGCACAAGTTTATAGAAGCCGGCCAGTACAATGACAATTTATATGGAACCAGTGTGCAGTCTGTGAGATTTGTAGCAGAAAGAGGCAAACACTGTATACTTGATGTATCAGGAAATGCTATCAAGCGGTTACAAGTTGCCCAGCTCTATCCCATTGCCATCTTCATAAAACCCAGGTCTCTGGAACCTCTTATGGAGATGAATAAGCGTCTAACAGAGGAACAAGCCAAGAAAACCTATGATCGAGCAATTAAGCTAGAACAAGAATTTGGAGAATATTTTACAGCTATTGTCCAAGGAGATACTTTAGAAGATATATATAACCAATGCAAGCTTGTTATTGAAGAGCAATCTGGGCCTTTCATCTGGATTCCCTCAAAGGAAAAGTTATAA MGLPTLEFSDSYLDSPDFRERLQCHEIELERTNKFIKELIKDGSLLIGALRSLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTLEYKTSLPPISPGRYSPIPKHMLVDDDYTRPPEPVYSTVNKLCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAVSLEGEPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKIHDLREQMMNHSMSSGSGSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEGDSEEMGVIPSKRRVERKERARLKTVKFNAKPGVIDSKGSFNDKRKKSFIFSRKFPFYKNKEQSEQETSDPERGQEDLILSYEPVTRQEINYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29083 ATXN2::RAD9B ENSG00000204842.18::ENSG00000151164.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 457 FALSE NA FALSE NA ATXN2 ENSG00000204842.18 protein_coding - - chr12:111443485-111599676:- chr12:111598784:- chr12:111881289-112037480:- chr12:112036588:- RAD9B ENSG00000151164.19 protein_coding + + chr12:110501655-110533556:+ chr12:110506579:+ chr12:110939460-110971361:+ chr12:110944384:+ chr12:111597959,chr12:111597962 chr12:110506529,chr12:110506526 NA NA chr12:112035763,chr12:112035766 chr12:110944334,chr12:110944331 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TFIIA|163-210|3.3e-07^SM-ATX|265-341|2e-25^LSM|272-320|5e-06^LsmAD|409-476|2.3e-17^TFIIA|442-469|0.96^PAM2|533-538|2.2^TFIIA-PARTIAL|571-731~|0.62 Rad9-PARTIAL|~274-276|1.1e-103 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.92Mb] 16 9 16 9 ONLY_REF_SPLICE YES_LDAS 0.2866 GT 1.5628 AG 1.7819 ENST00000550104.5 1-731 ENST00000392672.8 274-1290 chr12|-|[1]111598784-111599514[0]<==>chr12|+|[0]110506579-110506693[0]|[1]110512779-110512878[1]|[2]110515050-110515156[0]|[1]110518676-110518782[2]|[0]110518874-110518938[1]|[2]110519794-110519916[1]|[2]110522177-110522411[2]|[0]110530525-110530633[0]|[1]110531574-110531629[2] atgcgctcagcggccgcagctcctcggagtcccgcggtggccaccgagtctcgccgcttcgccgcagccaggtggcccgggtggcgctcgctccagcggccggcgcggcggagcgggcggggcggcggtggcgcggccccgggaccgtatccctccgccgcccctcccccgcccggccccggcccccctccctcccggcagagctcgcctccctccgcctcagactgttttggtagcaacggcaacggcggcggcgcgtttcggcccggctcccggcggctccttggtctcggcgggcctccccgccccttcgtcgtcctccttctccccctcgccagcccgggcgcccctccggccgcgccaacccgcgcctccccgctcggcgcccgcgcgtccccgccgcgttccggcgtctccttggcgcgcccggctcccggctgtccccgcccggcgtgcgagccggtgtatgggcccctcaccatgtcgctgaagccccagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcagcagcagcagccgccgcccgcggctgccaatgtccgcaagcccggcggcagcggccttctagcgtcgcccgccgccgcgccttcgccgtcctcgtcctcggtctcctcgtcctcggccacggctccctcctcggtggtcgcggcgacctccggcggcgggaggcccggcctgggcagTCAATTTTGCCCATCTTTAGATGTCTGAATTCCCTTGAAAGAAATATAGAGAAGTGCAGAATATTCACCAGATCTGATAAATGCAAAGTAGTTATTCAATTCTTCTACAGACATGGTATTAAAAGAACTCATAATATATGTTTTCAAGAAAGTCAGCCTTTGCAAGTTATTTTTGACAAGAATGTTTGTACTAATACGCTAATGATTCAACCAAGATTGCTTGCTGATGCCATTGTTCTTTTTACATCAAGTCAAGAGGAAGTTACTCTTGCTGTTACTCCACTGAATTTTTGCCTCAAGAGTTCTAATGAGGAATCAATGGATTTGAGCAATGCTGTACACAGTGAGATGTTTGTTGGCTCAGATGAGTTTGACTTCTTTCAAATTGGAATGGACACTGAGATAACATTTTGTTTCAAAGAATTGAAGGGAATACTGACATTTTCAGAAGCTACACATGCTCCTATATCCATTTATTTTGATTTCCCTGGGAAACCTCTGGCTTTGAGTATTGATGATATGTTAGTGGAAGCTAACTTTATTTTGGCCACATTAGCTGATGAACAAAGTAGAGCATCTTCACCACAGTCACTGTGTCTTTCACAGAAACGAAAAAGGTCAGATCTGATTGAAAAAAAGGCTGGCAAAAATGTAACTGGCCAGGCCCTGGAATGTATTTCAAAAAAAGCAGCACCAAGAAGGCTTTATCCTAAGGAGACTCTCACAAACATATCTGCATTGGAAAACTGTGGCAGCCCTGCAATGAAAAGAGTGGATGGAGATGTCAGTGAAGTATCAGAAAGCAGTGTCAGCAACACAGAGGAAGTGCCAGGGTCTCTGTGTCTCAGAAAGTTTTCTTGCATGTTCTTTGGAGCAGTTTCTTCTGACCAGCAAGAACACTTCAACCACCCTTTCGACAGTCTGGCAAGAGCAAGTGACAGTGAAGAGGACATGAATAATGTGTGCTGCAGGAAAGAATTTAATGGAAGTGATGCCAAATATTTCTGTATTATCTGA MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGSQFCPSLDV*IPLKEI*RSAEYSPDLINAK*LFNSSTDMVLKELIIYVFKKVSLCKLFLTRMFVLIR**FNQDCLLMPLFFLHQVKRKLLLLLLH*IFASRVLMRNQWI*AMLYTVRCLLAQMSLTSFKLEWTLR*HFVSKN*REY*HFQKLHMLLYPFILISLGNLWL*VLMIC*WKLTLFWPH*LMNKVEHLHHSHCVFHRNEKGQI*LKKRLAKM*LARPWNVFQKKQHQEGFILRRLSQTYLHWKTVAALQ*KEWMEMSVKYQKAVSATQRKCQGLCVSESFLACSLEQFLLTSKNTSTTLSTVWQEQVTVKRT*IMCAAGKNLMEVMPNISVLS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29088 EEA1::ALDH2 ENSG00000102189.17::ENSG00000111275.13 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE FALSE TRUE 458 TRUE 842 TRUE 310 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ALDH2 ENSG00000111275.13 protein_coding + + chr12:111766887-111817532:+ chr12:111783158:+ chr12:112204691-112255336:+ chr12:112220962:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C1_4|32-49|0.33^ATG14|37-214|6.5e-07^IBR|41-47|6.8^zf-C2H2_4|41-64|6.9e-05^FYVE|42-48|7^Crescentin|75-272|0.006^Crescentin|188-317|0.0037^ATG14|247-347|0.75^Crescentin|286-495|0.00015^ATG14|322-425|7^Crescentin|414-612|0.013^ATG14|447-544|0.00049^ATG14|565-693|0.00012^Crescentin|572-758|0.0067^ATG14|704-804|0.085^Crescentin|724-891|0.055^ATG14|795-922|0.23^Crescentin|823-1000|0.047^ATG14|900-1035|0.87^ATG14|988-1139|7^Crescentin|995-1153|0.14^ATG14|1123-1243|7^Crescentin|1138-1295|0.016^ATG14|1242-1328|0.28^Crescentin|1305-1347|0.0014^IBR|1345-1388|5.6e-06^FYVE|1348-1410|7.7e-25^zf-C2H2_4|1358-1375|4.2^FYVE_CARP1-2|1360-1393|9.4e-06^C1_4|1367-1385|0.006^zf-C2H2_4|1372-1382|6 Aldedh-PARTIAL|~220-508|3.8e-187^DUF1235|433-468|0.23 ["ALDH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:18.84Mb] 9 12 9 10.33 ONLY_REF_SPLICE YES_LDAS 0.2216 GT 1.9899 AG 1.7056 ENST00000322349.13 1-1524 ENST00000261733.7 220-1554 chr12|-|[2]92826166-92826285[0]|[2]92827912-92828061[0]|[2]92832512-92832850[0]|[2]92842465-92842581[0]|[2]92851111-92851266[0]|[2]92852175-92852296[1]|[0]92852912-92853025[1]|[0]92853915-92853954[0]|[2]92857275-92857340[0]|[2]92857431-92857485[2]|[1]92864860-92864987[0]|[2]92891629-92891721[0]|[2]92929043-92929066[0]<==>chr12|+|[0]111783158-111783298[2]|[0]111785267-111785346[1]|[2]111789823-111789934[2]|[0]111790434-111790562[2]|[0]111791306-111791419[2]|[0]111792061-111792163[0]|[1]111792598-111792782[2]|[0]111798078-111798242[2]|[0]111799906-111800063[1]|[2]111803859-111803973[2]|[0]111809543-111809575[2] atgttaaggaggattttacagaggactcctgggagagttggctctcaaggttctgatttagattcatcagcaactcctataaacacagtggacgtcaataatgaaagctcttcagagggtttcatatgtccccagtgtatgaaatctcttggatctgctgatgaacttttcaaacattatgaagctgttcatgatgctggtaatgactcaggtcatggaggagagtctaatcttgctttgaagcgagatgatgtaacactgctcagacaagaggtccaagacctacaggcttcacttaaggaagaaaaatggtactcggaagaattaaagaaggaattagaaaaatatcaagggctgcagcagcaagaggccaaacctgatgggttggtgactgattcatcagcagaactacagtctttggaacagcaattagaagaagcccaaacagaaaattttaatattaagcaaatgaaagacttatttgaacagaaagcagcccaacttgctactgaaattgcagatataaagtcaaagtatgatgaagaaaggagtcttcgagaagctgctgaacaaaaagtgacacgtctgacagaagaattaaacaaagaggcaactgtaattcaagatctgaagacggaactgcttcagagacctggtatagaagatgttgccgtgctaaagaaagaactggtccaagttcaaacactaatggataacatgaccttggaacgtgagcgagaatctgaaaaactcaaagatgaatgcaaaaaattgcagtcacaatatgctagctcagaggccacaataagccagctaaggagtgaacttgccaaaggcccccaggaagttgctgtatatgtacaggaactacaaaaactgaaaagttcagttaatgaattaacacaaaaaaatcagaccttgacagaaaacttgctgaaaaaagaacaagactatactaagttagaggagaaacataatgaagaatctgtgagtaaaaagaatattcaggcaacccttcatcaaaaagacctagattgtcaacagcttcagtcaagattgtctgcatctgaaacctcactgcatagaatacatgtagaactaagtgaaaaaggagaagctactcaaaagctcaaagaagaattatctgaggtagagaccaagtaccagcatctaaaggcggagtttaagcagctacaacaacagagagaagaaaaggagcagcatgggttacaactccaaagtgaaattaatcaattacatagcaaacttctggagacagagcgccaactaggggaagctcatggtaggctgaaggaacagagacagctttcaagtgaaaagttgatggataaagaacaacaagtggctgatttacaactcaaactttctcggttagaagagcagttgaaggaaaaagttacaaattctacagaattgcagcatcaattagataaaacaaagcaacagcatcaagaacaacaggctcttcagcaaagcaccacggcaaaacttcgagaagctcagGAAGATGTGGACAAGGCAGTGAAGGCCGCCCGGGCCGCCTTCCAGCTGGGCTCACCTTGGCGCCGCATGGACGCATCACACAGGGGCCGGCTGCTGAACCGCCTGGCCGATCTGATCGAGCGGGACCGGACCTACCTGGCGGCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCGGTATTATGCCGGCTGGGCTGATAAGTACCACGGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACACACGCCATGAACCTGTGGGGGTGTGCGGGCAGATCATTCCGTGGAATTTCCCGCTCCTGATGCAAGCATGGAAGCTGGGCCCAGCCTTGGCAACTGGAAACGTGGTTGTGATGAAGGTAGCTGAGCAGACACCCCTCACCGCCCTCTATGTGGCCAACCTGATCAAGGAGGCTGGCTTTCCCCCTGGTGTGGTCAACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGATGTGGACAAAGTGGCATTCACAGGCTCCACTGAGATTGGCCGCGTAATCCAGGTTGCTGCTGGGAGCAGCAACCTCAAGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACATCATCATGTCAGATGCCGATATGGATTGGGCCGTGGAACAGGCCCACTTCGCCCTGTTCTTCAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGGACCTTCGTGCAGGAGGACATCTATGATGAGTTTGTGGAGCGGAGCGTTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCCCTTTGATAGCAAGACCGAGCAGGGGCCGCAGGTGGATGAAACTCAGTTTAAGAAGATCCTCGGCTACATCAACACGGGGAAGCAAGAGGGGGCGAAGCTGCTGTGTGGTGGGGGCATTGCTGCTGACCGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCAGGATGGCATGACCATCGCCAAGGAGGAGATCTTCGGGCCAGTGATGCAGATCCTGAAGTTCAAGACCATAGAGGAGGTTGTTGGGAGAGCCAACAATTCCACGTACGGGCTGGCCGCAGCTGTCTTCACAAAGGATTTGGACAAGGCCAATTACCTGTCCCAGGCCCTCCAGGCGGGCACTGTGTGGGTCAACTGCTATGATGTGTTTGGAGCCCAGTCACCCTTTGGTGGCTACAAGATGTCGGGGAGTGGCCGGGAGTTGGGCGAGTACGGGCTGCAGGCATACACTGAAGTGAAAACTGTCACAGTCAAAGTGCCTCAGAAGAACTCATAA MLRRILQRTPGRVGSQGSDLDSSATPINTVDVNNESSSEGFICPQCMKSLGSADELFKHYEAVHDAGNDSGHGGESNLALKRDDVTLLRQEVQDLQASLKEEKWYSEELKKELEKYQGLQQQEAKPDGLVTDSSAELQSLEQQLEEAQTENFNIKQMKDLFEQKAAQLATEIADIKSKYDEERSLREAAEQKVTRLTEELNKEATVIQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASSEATISQLRSELAKGPQEVAVYVQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHNEESVSKKNIQATLHQKDLDCQQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS* FALSE FALSE NA NA TRUE hsa-mir-6761 chr12:111799834-111799905:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE aldehyde dehydrogenase 2 family (mitochondrial) 2 leiomyoma mesenchymal fusion translocation 29089 EEA1::ALDH2 ENSG00000102189.17::ENSG00000111275.13 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 459 TRUE 842 TRUE 310 EEA1 ENSG00000102189.17 protein_coding - - chr12:92770637-92929331:- chr12:92826166:- chr12:93164413-93323107:- chr12:93219942:- ALDH2 ENSG00000111275.13 protein_coding + + chr12:111766887-111817532:+ chr12:111785267:+ chr12:112204691-112255336:+ chr12:112223071:+ chr12:92824304,chr12:92824301,chr12:92824268,chr12:92824258,chr12:92824257,chr12:92824248 chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236,chr12:111785236 NA NA chr12:93218080,chr12:93218077,chr12:93218044,chr12:93218034,chr12:93218033,chr12:93218024 chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040,chr12:112223040 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C1_4|32-49|0.33^ATG14|37-214|6.5e-07^IBR|41-47|6.8^zf-C2H2_4|41-64|6.9e-05^FYVE|42-48|7^Crescentin|75-272|0.006^Crescentin|188-317|0.0037^ATG14|247-347|0.75^Crescentin|286-495|0.00015^ATG14|322-425|7^Crescentin|414-612|0.013^ATG14|447-544|0.00049^ATG14|565-693|0.00012^Crescentin|572-758|0.0067^ATG14|704-804|0.085^Crescentin|724-891|0.055^ATG14|795-922|0.23^Crescentin|823-1000|0.047^ATG14|900-1035|0.87^ATG14|988-1139|7^Crescentin|995-1153|0.14^ATG14|1123-1243|7^Crescentin|1138-1295|0.016^ATG14|1242-1328|0.28^Crescentin|1305-1347|0.0014^IBR|1345-1388|5.6e-06^FYVE|1348-1410|7.7e-25^zf-C2H2_4|1358-1375|4.2^FYVE_CARP1-2|1360-1393|9.4e-06^C1_4|1367-1385|0.006^zf-C2H2_4|1372-1382|6 Aldedh-PARTIAL|~220-461|9.4e-162^DUF1235|386-421|0.2 ["ALDH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:18.84Mb] 8 5 8 1.67 ONLY_REF_SPLICE YES_LDAS 0.1108 GT 1.9899 AG 1.9086 ENST00000322349.13 1-1524 ENST00000416293.7 220-1413 chr12|-|[2]92826166-92826285[0]|[2]92827912-92828061[0]|[2]92832512-92832850[0]|[2]92842465-92842581[0]|[2]92851111-92851266[0]|[2]92852175-92852296[1]|[0]92852912-92853025[1]|[0]92853915-92853954[0]|[2]92857275-92857340[0]|[2]92857431-92857485[2]|[1]92864860-92864987[0]|[2]92891629-92891721[0]|[2]92929043-92929066[0]<==>chr12|+|[0]111785267-111785346[1]|[2]111789823-111789934[2]|[0]111790434-111790562[2]|[0]111791306-111791419[2]|[0]111792061-111792163[0]|[1]111792598-111792782[2]|[0]111798078-111798242[2]|[0]111799906-111800063[1]|[2]111803859-111803973[2]|[0]111809543-111809575[2] atgttaaggaggattttacagaggactcctgggagagttggctctcaaggttctgatttagattcatcagcaactcctataaacacagtggacgtcaataatgaaagctcttcagagggtttcatatgtccccagtgtatgaaatctcttggatctgctgatgaacttttcaaacattatgaagctgttcatgatgctggtaatgactcaggtcatggaggagagtctaatcttgctttgaagcgagatgatgtaacactgctcagacaagaggtccaagacctacaggcttcacttaaggaagaaaaatggtactcggaagaattaaagaaggaattagaaaaatatcaagggctgcagcagcaagaggccaaacctgatgggttggtgactgattcatcagcagaactacagtctttggaacagcaattagaagaagcccaaacagaaaattttaatattaagcaaatgaaagacttatttgaacagaaagcagcccaacttgctactgaaattgcagatataaagtcaaagtatgatgaagaaaggagtcttcgagaagctgctgaacaaaaagtgacacgtctgacagaagaattaaacaaagaggcaactgtaattcaagatctgaagacggaactgcttcagagacctggtatagaagatgttgccgtgctaaagaaagaactggtccaagttcaaacactaatggataacatgaccttggaacgtgagcgagaatctgaaaaactcaaagatgaatgcaaaaaattgcagtcacaatatgctagctcagaggccacaataagccagctaaggagtgaacttgccaaaggcccccaggaagttgctgtatatgtacaggaactacaaaaactgaaaagttcagttaatgaattaacacaaaaaaatcagaccttgacagaaaacttgctgaaaaaagaacaagactatactaagttagaggagaaacataatgaagaatctgtgagtaaaaagaatattcaggcaacccttcatcaaaaagacctagattgtcaacagcttcagtcaagattgtctgcatctgaaacctcactgcatagaatacatgtagaactaagtgaaaaaggagaagctactcaaaagctcaaagaagaattatctgaggtagagaccaagtaccagcatctaaaggcggagtttaagcagctacaacaacagagagaagaaaaggagcagcatgggttacaactccaaagtgaaattaatcaattacatagcaaacttctggagacagagcgccaactaggggaagctcatggtaggctgaaggaacagagacagctttcaagtgaaaagttgatggataaagaacaacaagtggctgatttacaactcaaactttctcggttagaagagcagttgaaggaaaaagttacaaattctacagaattgcagcatcaattagataaaacaaagcaacagcatcaagaacaacaggctcttcagcaaagcaccacggcaaaacttcgagaagctcagGCCTTGGAGACCCTGGACAATGGCAAGCCCTATGTCATCTCCTACCTGGTGGATTTGGACATGGTCCTCAAATGTCTCCGGTATTATGCCGGCTGGGCTGATAAGTACCACGGGAAAACCATCCCCATTGACGGAGACTTCTTCAGCTACACACGCCATGAACCTGTGGGGGTGTGCGGGCAGATCATTCCGTGGAATTTCCCGCTCCTGATGCAAGCATGGAAGCTGGGCCCAGCCTTGGCAACTGGAAACGTGGTTGTGATGAAGGTAGCTGAGCAGACACCCCTCACCGCCCTCTATGTGGCCAACCTGATCAAGGAGGCTGGCTTTCCCCCTGGTGTGGTCAACATTGTGCCTGGATTTGGCCCCACGGCTGGGGCCGCCATTGCCTCCCATGAGGATGTGGACAAAGTGGCATTCACAGGCTCCACTGAGATTGGCCGCGTAATCCAGGTTGCTGCTGGGAGCAGCAACCTCAAGAGAGTGACCTTGGAGCTGGGGGGGAAGAGCCCCAACATCATCATGTCAGATGCCGATATGGATTGGGCCGTGGAACAGGCCCACTTCGCCCTGTTCTTCAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGGACCTTCGTGCAGGAGGACATCTATGATGAGTTTGTGGAGCGGAGCGTTGCCCGGGCCAAGTCTCGGGTGGTCGGGAACCCCTTTGATAGCAAGACCGAGCAGGGGCCGCAGGTGGATGAAACTCAGTTTAAGAAGATCCTCGGCTACATCAACACGGGGAAGCAAGAGGGGGCGAAGCTGCTGTGTGGTGGGGGCATTGCTGCTGACCGTGGTTACTTCATCCAGCCCACTGTGTTTGGAGATGTGCAGGATGGCATGACCATCGCCAAGGAGGAGATCTTCGGGCCAGTGATGCAGATCCTGAAGTTCAAGACCATAGAGGAGGTTGTTGGGAGAGCCAACAATTCCACGTACGGGCTGGCCGCAGCTGTCTTCACAAAGGATTTGGACAAGGCCAATTACCTGTCCCAGGCCCTCCAGGCGGGCACTGTGTGGGTCAACTGCTATGATGTGTTTGGAGCCCAGTCACCCTTTGGTGGCTACAAGATGTCGGGGAGTGGCCGGGAGTTGGGCGAGTACGGGCTGCAGGCATACACTGAAGTGAAAACTGTCACAGTCAAAGTGCCTCAGAAGAACTCATAA MLRRILQRTPGRVGSQGSDLDSSATPINTVDVNNESSSEGFICPQCMKSLGSADELFKHYEAVHDAGNDSGHGGESNLALKRDDVTLLRQEVQDLQASLKEEKWYSEELKKELEKYQGLQQQEAKPDGLVTDSSAELQSLEQQLEEAQTENFNIKQMKDLFEQKAAQLATEIADIKSKYDEERSLREAAEQKVTRLTEELNKEATVIQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERERESEKLKDECKKLQSQYASSEATISQLRSELAKGPQEVAVYVQELQKLKSSVNELTQKNQTLTENLLKKEQDYTKLEEKHNEESVSKKNIQATLHQKDLDCQQLQSRLSASETSLHRIHVELSEKGEATQKLKEELSEVETKYQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQEQQALQQSTTAKLREAQALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS* FALSE FALSE NA NA TRUE hsa-mir-6761 chr12:111799834-111799905:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE aldehyde dehydrogenase 2 family (mitochondrial) 2 leiomyoma mesenchymal fusion translocation 29092 RAB30::PPFIA1 ENSG00000137502.10::ENSG00000131626.19 RVH421 SRR8615430 SRR8670751 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 461 FALSE NA FALSE NA RAB30 ENSG00000137502.10 protein_coding - - chr11:82973133-83071923:- chr11:83071691:- chr11:82684175-82782965:- chr11:82782733:- PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70354301:+ chr11:70116796-70231418:+ chr11:70200407:+ chr11:83070421,chr11:83070424 chr11:70352711,chr11:70352708 NA NA chr11:82781463,chr11:82781466 chr11:70198817,chr11:70198814 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:12.59Mb] 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.1606 GT 1.5329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29096 TRAF2::EPB41L4B ENSG00000127191.18::ENSG00000095203.15 RT112 SRR8615432 SRR8670752 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 463 FALSE NA FALSE NA TRAF2 ENSG00000127191.18 protein_coding + + chr9:136881912-136926607:+ chr9:136909994:+ chr9:139776364-139821059:+ chr9:139804446:+ EPB41L4B ENSG00000095203.15 protein_coding - - chr9:109171974-109321059:- chr9:109279921:- chr9:111934254-112083339:- chr9:112042201:- chr9:136911856,chr9:136911857 chr9:109284856,chr9:109284855 NA NA chr9:139806308,chr9:139806309 chr9:112047136,chr9:112047135 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-RING_6|27-70|2.8e-06^zf-C3HC4|34-72|8.6e-12^TRAF3_RING|34-72|3.4e-11^zf-C3HC4_2|34-72|6.9e-07^zf-C3HC4_4|34-67|2.4e-05^zf-C3HC4_5|45-70|0.00015^TRAF2_zf|70-76|2.3^zf-C3HC4_5|99-112|0.25^TRAF2_zf|104-122|1.7e-15^TRAF3_RING|122-136|8^zf-TRAF|125-170|0.00021^zf-C3HC4|135-139|4.6^zf-C3HC4_5|136-141|2.3^zf-RING_6|163-176|3.6^zf-TRAF|178-235|3.4e-22^SlyX|232-258|0.57^ERM_helical|235-346|0.009^TRAF_BIRC3_bd|267-330|6.2e-37^SlyX|270-322|0.00023^SlyX|311-350|0.0079^TRAF_BIRC3_bd|337-346|4.7^TRAF-mep_MATH|376-493|4.3e-49^MATH|384-497|7.1e-05 FERM_C-PARTIAL|~307-370|4.3e-28^FA|380-420|2.8e-16 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:27.56Mb] 15 12 15 12 ONLY_REF_SPLICE YES_LDAS 0.3286 GT 1.8256 AG 1.7465 ENST00000247668.7 1-603 ENST00000374566.8 307-2703 chr9|+|[0]136898741-136898928[1]|[2]136899594-136899672[2]|[0]136900422-136900520[2]|[0]136908070-136908231[2]|[0]136909920-136909994[2]<==>chr9|-|[2]109174554-109174623[2]|[1]109176551-109176696[0]|[2]109182729-109182797[0]|[2]109185489-109185605[0]|[2]109192278-109192355[0]|[2]109194220-109194397[2]|[1]109200236-109200334[2]|[1]109203663-109203730[0]|[2]109207924-109208049[0]|[2]109213700-109213818[1]|[0]109216922-109217145[2]|[1]109243618-109243682[0]|[2]109247756-109247789[2]|[1]109251481-109251511[1]|[0]109253441-109253550[2]|[1]109255511-109255680[0]|[2]109255774-109255843[2]|[1]109256136-109256224[0]|[2]109256393-109256480[2]|[1]109258177-109258297[1]|[0]109263050-109263102[2]|[1]109264980-109265024[2]|[1]109267473-109267551[1]|[0]109268391-109268433[0]|[2]109279817-109279921[0] atggctgcagctagcgtgaccccccctggctccctggagttgctacagcccggcttctccaagaccctcctggggaccaagctggaagccaagtacctgtgctccgcctgcagaaacgtcctccgcaggcccttccaggcgcagtgtggccaccggtactgctccttctgcctggccagcatcctcagctctgggcctcagaactgtgctgcctgtgttcacgagggcatatatgaagaaggcatttctattttagaaagcagttcggccttcccagataatgctgcccgcagggaggtggagagcctgccggccgtctgtcccagtgatggatgcacctggaaggggaccctgaaagaatacgagagctgccacgaaggccgctgcccgctcatgctgaccgaatgtcccgcgtgcaaaggcctggtccgccttggtgaaaaggagcgccacctggagcacgagtgcccggagagaagcctgagctgccggcattgccgggcaccctgctgcggagcagacgtgaaggcgcaccacgaggtctgccccaagttccccttaacttgtgacggctgcggcaagaagaagatcccccgggagaagAAACATGCCAAAGGCCAGGATTTGTTTGATCAGATTGTGTACCACTTGGACCTTGTGGAAACAGATTACTTTGGCCTCCAGTTCCTCGACTCTGCCCAGGTTGCGCACTGGCTGGATCATGCCAAACCCATAAAAAAGCAGATGAAAATTGGACCTGCTTATGCTTTACACTTTCGAGTTAAATACTATTCTTCAGAACCAAACAACCTTCGTGAGGAGTTTACAAGGTACCTGTTTGTTTTACAACTCAGGCATGACATTCTTTCTGGAAAATTGAAATGCCCTTATGAAACAGCTGTGGAATTAGCTGCTCTCTGTCTACAAGCGGAGCTTGGGGAGTGCGAGCTTCCAGAACACACACCAGAGCTTGTGTCTGAGTTTCGGTTCATTCCAAATCAGACAGAAGCAATGGAATTTGATATCTTCCAGAGATGGAAAGAGTGCAGGGGAAAGAGCCCTGCCCAGGCGGAACTCTCCTATCTGAATAAAGCGAAGTGGCTGGAAATGTATGGGGTAGACATGCACGTTGTCAGGGGAAGAGATGGCTGTGAATATTCTCTTGGACTGACCCCGACAGGCATATTAATCTTTGAAGGAGCTAACAAAATAGGCTTATTCTTTTGGCCTAAAATTACCAAAATGGATTTTAAAAAGAGCAAATTGACACTCGTGGTGGTCGAGGATGATGATCAGGGACGTGAGCAAGAGCACACGTTTGTGTTCCGGTTAGACAGTGCCAGGACCTGCAAACACCTTTGGAAGTGTGCAGTTGAGCACCACGCATTCTTCCGACTGCGGACGCCAGGAAACAGCAAATCCAATAGATCCGACTTTATCAGGCTGGGCTCTCGCTTCAGATTCAGTGGGCGGACAGAATATCAAGCTACACATGGCTCCAGGTTACGAAGAACCAGCACCTTTGAGAGGAAGCCTAGTAAACGTTATCCATCCCGGAGACATTCAACGTTCAAAGCAAGCAACCCAGTGATAGCAGCCCAGCTCTGCTCTAAAACAAATCCAGAAGTCCATAATTACCAGCCTCAATATCATCCTAATATCCATCCCAGCCAGCCCCGGTGGCATCCTCACTCTCCAAATGTCAGCTACCCGCTCCCTTCCCCAGTGCTTAGCAGCTCGGACCGGTTGCCTTTTGGCATTGAGGAGAATGGGGGCACACCGTTCCTCACCGCAGCTTCAGGAAGGCATCACCACCAGCACCAGCATCAGCATCAGCACCAGCACCACTCAAACTACAGCCTCTCACTGACCCTGGAGAACAAAGAGGGGCCTCTGAGGTCCCCAAACTCCAGCAGCAAGTCCCTTACAAAACTGAGTCCAGGAACACCTGCCTTGTTCAGTGAAGCCGCTGCCCATCTAAAGAAGCTGGAACTGGAAACTGTGAAGGCTGCTGGACCCTGGCCTCCTCTGCACATCAACATAAACAAGGCTGAAGAAAAGAAAGTCTCGGAGAAAACTCTTCAGACTCCACTTTTGCCTTCCCCTGTTGCGGATCATGTGAAGTGTAACATTCTGAAAGCCCAGTTGGAAAATGCTTCCCGAGTGAACATCCAGGGTGGAAAGGAGGAATCACCGTTTGTAAATATCAATAAGAAATCCAGTCTTCAGGACGCTAGTGTAAGAAGTCCTATTCCTATTCGTGTGGAAACTGCCCAGCCAGCTGTGGAAAAGCCGGAAATCAAGCCTCCCCGAGTGAGGAAGTTAACAAGACAGTATAGTTTTGATGAAGACGACCTCCCTCCAGACCTGGCCGAGGCAGTGGGAGTGACCACATCTACAACCACAAACACCACAACGGCCGCCACACAAGTCTCCGTGCCGCTGCCGTCCCCCAAGGTCCAGAATGTCAGCTCGCCTCACAAGTCAGAAGGCAAAGGCCTGCTGTCCCCTGGGGCCAAGAGCCCCTCTGACCGAGGAGGTGCCTTTACCCTGGAGCCGGGTGATCTTCTGATGGATTTCACAGAAGCCACTCCTCTGGCAGAGCCCGCCAGCAACCCCCACTGTGCCCACTCTCGCTGTTCTCCTCCACTCTCTCTCCCCATGAAGGAAGAGACCACTGGAGTTTGCATGTACCCTCCAATCAAAACGAGGCTGATAAAAACATTCCCGGTTGATACAATGAACCCGTTTCCTGATACTTTCACCACAGGGCCACAGTTTACTGCAGACTTCAGAGACAGTAAATTACAGTGCTGTCCTGGCCCGACTTCCCCGCTGATCCCAGCAGCGACCCTGAGGCCTTTGACAGAGACCGTCTCCACAGTGCAGACCATTTACACCACCCGGAAACCTGTTTCTCTGGCAGCCAGTGCAGAGACACTCCGGCAGGAACTGGAGAGAGAGAAGATGATGAAAAGACTGTTGATGACCGAACTGTGA MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKEYESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHAKPIKKQMKIGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPEHTPELVSEFRFIPNQTEAMEFDIFQRWKECRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRSDFIRLGSRFRFSGRTEYQATHGSRLRRTSTFERKPSKRYPSRRHSTFKASNPVIAAQLCSKTNPEVHNYQPQYHPNIHPSQPRWHPHSPNVSYPLPSPVLSSSDRLPFGIEENGGTPFLTAASGRHHHQHQHQHQHQHHSNYSLSLTLENKEGPLRSPNSSSKSLTKLSPGTPALFSEAAAHLKKLELETVKAAGPWPPLHININKAEEKKVSEKTLQTPLLPSPVADHVKCNILKAQLENASRVNIQGGKEESPFVNINKKSSLQDASVRSPIPIRVETAQPAVEKPEIKPPRVRKLTRQYSFDEDDLPPDLAEAVGVTTSTTTNTTTAATQVSVPLPSPKVQNVSSPHKSEGKGLLSPGAKSPSDRGGAFTLEPGDLLMDFTEATPLAEPASNPHCAHSRCSPPLSLPMKEETTGVCMYPPIKTRLIKTFPVDTMNPFPDTFTTGPQFTADFRDSKLQCCPGPTSPLIPAATLRPLTETVSTVQTIYTTRKPVSLAASAETLRQELEREKMMKRLLMTEL* FALSE TRUE hsa-mir-4479 chr9:136886733-136886803:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29101 LRRC1::NDRG3 ENSG00000137269.15::ENSG00000101079.21 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 466 FALSE NA FALSE NA LRRC1 ENSG00000137269.15 protein_coding + + chr6:53794497-53924125:+ chr6:53842227:+ chr6:53659295-53788923:+ chr6:53707025:+ NDRG3 ENSG00000101079.21 protein_coding - - chr20:36651766-36746090:- chr20:36656532:- chr20:35280169-35374493:- chr20:35284935:- chr6:53850905,chr6:53850904 chr20:36659718,chr20:36659719 NA NA chr6:53715703,chr6:53715702 chr20:35288121,chr20:35288122 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRR_9|27-71|0.018^LRR_8|36-94|9.7e-12^LRR_4|37-69|5.4e-05^LRR_1|37-58|0.0091^H-kinase_dim|40-56|1.5^LRR_4|60-97|7.4e-08^LRR_1|60-80|0.0011^LRR_9|80-188|6.8e-09^LRR_8|83-135|7.3e-06^LRR_1|84-103|0.0015^LRR_4|106-142|3.6e-06^LRR_1|107-127|0.0033^LRR_8|129-186|9.9e-10^LRR_1|129-150|0.17^LRR_4|152-186|5.8e-07^LRR_1|152-173|0.036^H-kinase_dim|159-176|3.8^LRR_4|175-212|1.5e-08^LRR_1|175-196|0.00025^LRR_9|179-254|0.00017^LRR_8|198-255|2.3e-11^LRR_4|198-235|1.2e-06^LRR_1|198-219|0.0002^LRR_4|220-259|2.6e-07^LRR_1|221-242|0.0014^LRR_4-PARTIAL|243-277~|6.3e-06^LRR_1|244-265|0.0057^H-kinase_dim|246-263|0.3^LRR_9-PARTIAL|260-277~|1.3e-06^LRR_8-PARTIAL|267-277~|1e-10^LRR_1-PARTIAL|267-277~|0.12^H-kinase_dim-PARTIAL|269-277~|9.1e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr20] 91 55 91 55 ONLY_REF_SPLICE YES_LDAS 1.8262 GT 1.9329 AG 1.7232 ENST00000370888.6 1-277 ENST00000373803.6 859-1167 chr6|+|[0]53795257-53795415[2]|[0]53842110-53842227[0]<==>chr20|-|[2]36653520-36653701[1]|[0]36654801-36654839[1]|[0]36656360-36656411[0]|[2]36656497-36656532[0] atgttccactgcatccccctgtggcggtgcaaccgtcatgtggagagcatcgacaagcgccactgctcgctggtctacgtccccgaggagatctaccgctatgcccggagcctggaggagctgctgctggacgccaaccagctccgcgagctgcccgagcaatttttccagctagtcaaattacgaaagcttggacttagtgataatgaaattcagcggctccctccagaaatagcaaacttcatgcagctggtggaactagatgtgtctcgaaatgATGGCGGACTGTGGGGGACTGCCCCAGGTAGTTCAGCCTGGGAAGCTCACCGAGGCCTTCAAGTACTTTTTGCAGGGAATGGGCTACATCCCGTATGTGCAGCTCAGTCACCTGAGCACCGAGTCAGTACCATCTGCCAGCATGACTCGGCTCGCCCGATCACGAACCCACTCAACCTCGAGTAGCCTCGGCTCTGGAGAAAGTCCCTTCAGCCGGTCTGTCACCAGCAATCAGTCAGATGGAACTCAAGAATCCTGTGAGTCCCCTGATGTCCTGGACAGACACCAGACCATGGAGGTGTCCTGCTAA MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDGGLWGTAPGSSAWEAHRGLQVLFAGNGLHPVCAAQSPEHRVSTICQHDSARPITNPLNLE*PRLWRKSLQPVCHQQSVRWNSRIL*VP*CPGQTPDHGGVLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29102 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21864213,chr9:21864229,chr9:21864233,chr9:21864219,chr9:21864198,chr9:21864202,chr9:21864211,chr9:21864214,chr9:21864218,chr9:21864199,chr9:21864224 chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106333,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465,chr9:22106465 NA NA chr9:21864212,chr9:21864228,chr9:21864232,chr9:21864218,chr9:21864197,chr9:21864201,chr9:21864210,chr9:21864213,chr9:21864217,chr9:21864198,chr9:21864223 chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106332,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464,chr9:22106464 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 42 16 42 15.75 ONLY_REF_SPLICE YES_LDAS 0.7223 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29104 GLRB::LRBA ENSG00000109738.11::ENSG00000198589.15 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 468 FALSE NA FALSE NA GLRB ENSG00000109738.11 protein_coding + + chr4:157076125-157172090:+ chr4:157122397:+ chr4:157997277-158093242:+ chr4:158043549:+ LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150436864:- chr4:151185587-151936879:- chr4:151358016:- chr4:157128071 chr4:150445544 NA NA chr4:158049223 chr4:151366696 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Neur_chan_memb|30-33|0.69^Neur_chan_LBD|57-265|1.5e-57^Neur_chan_memb-PARTIAL|273-297~|5.6e-13 Beach-PARTIAL|~259-304|8.6e-127^NBCH_WD40|401-650|8.5e-45^WD40|420-444|0.0023^WD40|449-489|2.4e-06^WD40|511-537|0.00097^WD40|591-623|1.5e-05^WD40|632-654|0.57 ["LRBA:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:6.06Mb] 19 19 19 19 ONLY_REF_SPLICE YES_LDAS 0.4754 GT 1.5546 AG 1.9899 ENST00000541722.5 1-297 ENST00000648878.1 259-2061 chr4|+|[0]157078025-157078146[1]|[2]157120556-157120662[0]|[1]157122330-157122397[2]<==>chr4|-|[2]150265756-150265812[0]|[2]150266399-150266441[2]|[1]150277853-150278004[0]|[2]150282450-150282646[1]|[0]150285933-150286034[1]|[0]150302625-150302792[1]|[0]150310229-150310384[1]|[0]150315561-150315623[1]|[0]150321191-150321383[0]|[2]150325809-150325898[0]|[2]150349992-150350159[0]|[2]150415438-150415590[0]|[2]150435589-150435708[0]|[2]150436724-150436864[0] atgaagtttttattgacaactgcctttttaattttaatttccttgtgggtggaagaagcctattctaaggaaaagtcttcaaagaaagggaaggggaaaaagaagcagtatctatgcccatctcagcagtcagcagaggaccttgcccgagtacctgccaactccactagcaatatcttgaacaggttattggtcagttatgatcccaggataagaccaaacttcaaaggcattcctgttgatgtagtagtcaacatttttattaacagttttggatccattcaagaaacaacaatgCCAATAGGAGCTCTGAACCCAAAAAGAGCAGCATTCTTCGCTGAGCGTTATGAATCATGGGAAGATGATCAAGTTCCAAAGTTTCACTATGGTACTCATTACTCAACTGCAAGTTTTGTTCTTGCATGGCTGCTAAGAATAGAACCCTTTACAACTTATTTCCTAAATTTGCAAGGAGGCAAATTTGATCATGCAGATCGAACTTTTTCATCAATTTCCAGAGCTTGGCGAAACAGTCAGCGTGATACCTCTGATATTAAGGAGTTGATCCCTGAATTTTATTATCTCCCTGAGATGTTTGTCAACTTCAATAATTATAATCTTGGAGTGATGGATGATGGGACAGTAGTGTCTGATGTCGAACTTCCTCCTTGGGCCAAAACCTCAGAAGAATTTGTTCACATAAACAGATTGGCCCTGGAGAGTGAATTTGTTTCCTGCCAGCTTCACCAATGGATTGATCTCATTTTTGGCTATAAACAGCAAGGACCAGAAGCTGTCCGAGCCCTCAATGTGTTCTATTACTTGACCTATGAAGGAGCTGTCAATCTGAATTCAATAACTGATCCTGTGTTGAGAGAGGCTGTTGAAGCTCAAATCCGAAGTTTTGGACAGACTCCTTCTCAACTACTCATAGAGCCCCATCCTCCCAGAGGTTCTGCCATGCAAGTGTATCTCCTCCTGCAGAGTCCATTGATGTTCACAGACAAAGCCCAGCAGGATGTTATCATGGTCCTCAAGTTTCCCTCCAACTCCCCTGTTACTCACGTGGCAGCCAACACCCAGCCTGGTTTGGCAACTCCCGCTGTGATCACAGTCACTGCTAACAGGTTATTTGCGGTGAACAAATGGCACAACCTTCCTGCTCATCAAGGTGCTGTACAAGACCAGCCATACCAGCTGCCAGTGGAAATCGATCCTCTCATAGCCAGCAATACAGGAATGCACAGGAGGCAAATCACTGACCTTTTAGACCAAAGTATTCAAGTGCATTCCCAGTGCTTTGTCATCACTTCAGACAACCGCTATATTCTCGTCTGTGGCTTCTGGGATAAAAGTTTCAGAGTCTATTCTACAGACACAGGAAGATTGATCCAAGTGGTGTTTGGCCATTGGGATGTCGTCACTTGCCTTGCTCGTTCTGAGTCATATATTGGGGGAAATTGCTACATTCTCTCAGGGTCACGTGATGCAACTCTTTTGCTGTGGTATTGGAATGGAAAATGCAGTGGGATTGGAGATAACCCAGGCAGTGAGACTGCTGCTCCTCGGGCCATTTTGACCGGCCATGACTATGAGGTCACATGTGCTGCGGTGTGTGCGGAGCTAGGCCTGGTGTTGAGTGGTTCACAAGAAGGACCATGTCTCATACATTCCATGAATGGAGACTTGTTGAGGACCTTGGAGGGTCCTGAAAACTGCCTGAAACCAAAACTCATTCAGGCTTCAAGAGAGGGTCATTGTGTCATATTCTATGAAAACGGCCTCTTCTGTACATTCAGTGTGAATGGAAAACTCCAGGCCACGATGGAAACAGATGATAACATAAGAGCCATCCAGCTGAGCCGAGATGGGCAGTACCTGCTCACAGGAGGAGACAGAGGAGTGGTCGTGGTCCGGCAGGTGTCGGACCTCAAGCAGCTCTTTGCCTATCCAGGATGTGACGCTGGAATCCGGGCCATGGCGCTGTCTTACGACCAGAGGAGACCAAGAAGCTTGCAGAAGTTCTTATCTTCAGTGATTTCGGTGCATCATTTCTGGCATGGCTTCAGGAAGCATTGTGCTATTTTACAACGACTTTAA MKFLLTTAFLILISLWVEEAYSKEKSSKKGKGKKKQYLCPSQQSAEDLARVPANSTSNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVYLLLQSPLMFTDKAQQDVIMVLKFPSNSPVTHVAANTQPGLATPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGRLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKCSGIGDNPGSETAAPRAILTGHDYEVTCAAVCAELGLVLSGSQEGPCLIHSMNGDLLRTLEGPENCLKPKLIQASREGHCVIFYENGLFCTFSVNGKLQATMETDDNIRAIQLSRDGQYLLTGGDRGVVVVRQVSDLKQLFAYPGCDAGIRAMALSYDQRRPRSLQKFLSSVISVHHFWHGFRKHCAILQRL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29106 PSMC4::RXRB ENSG00000013275.8::ENSG00000204231.11 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 469 FALSE NA FALSE NA PSMC4 ENSG00000013275.8 protein_coding + + chr19:39971165-39981764:+ chr19:39974828:+ chr19:40477072-40487671:+ chr19:40480735:+ RXRB ENSG00000204231.11 protein_coding - - chr6:33193588-33200665:- chr6:33199416:- chr6:33161365-33168442:- chr6:33167193:- chr19:39976142,chr19:39976315,chr19:39976141 chr6:33199574,chr6:33199576,chr6:33199575 NA NA chr19:40482049,chr19:40482222,chr19:40482048 chr6:33167351,chr6:33167353,chr6:33167352 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_23|35-80|0.042^GrpE|36-102|0.00098^DUF3450|38-93|0.00048^AAA_11|45-104|0.61^Bag6_BAGS|45-70|0.0026^AAA_25|46-89|2.2^DUF815|48-75|3.7^AAA|54-79|5^AAA_14|56-96|2.5^AAA_16|88-144|2.5^Prot_ATP_ID_OB_C|89-144|1.2e-15^Sigma54_activat|93-125|1.4^NTPase_1|154-182|0.43^AAA_3|159-179|0.82^AAA_16|190-233|4.2e-06^TniB|191-221|0.0038^AAA_23|196-220|0.035^DUF815|197-267|1.2e-06^TsaE|198-259|0.0001^TIP49|199-237|1.3e-05^Zeta_toxin|199-230|0.00016^Sigma54_activat|200-224|0.0025^IstB_IS21|200-230|5.6e-05^AAA_7|200-278|0.00023^AAA_5|201-323|1.9e-10^RuvB_N|201-271|5.4e-07^ATPase_2|201-223|0.00011^AAA_30|201-232|0.00068^AAA|202-335|6.2e-48^AAA_2|202-295|6.1e-10^AAA_22|202-233|5e-05^nSTAND3|202-311|3.5e-07^AAA_28|202-248|2e-06^RNA_helicase|202-259|2.3e-06^Mg_chelatase|202-220|3.1e-06^AAA_14|202-270|1.1e-05^AAA_18|202-297|9.7e-05^NACHT|202-221|9.5e-05^AAA_3|202-230|0.00034^AAA_33|202-241|7.8e-05^Parvo_NS1|202-223|7.9e-05^AAA_25|202-224|0.00016^NB-ARC|202-223|0.00026^AAA_24|202-223|0.00024^ABC_tran|202-225|0.00059^AAA_11|202-223|0.0022^NTPase_1|203-262|0.00046^AAA_17|205-252|0.00012^AAA_25|246-286|0.87^TniB|247-279|0.19^AAA_16|249-293|0.077^NACHT|256-295|2.7^Sigma54_activat|261-313|0.16^GrpE|281-306|0.61^DUF3450|286-327|3^RuvB_N|299-322|3.8^Prot_ATP_ID_OB_C|312-325|0.72^NB-ARC|330-364|5^AAA_lid_3|358-401|2.3e-11^AAA_18|363-402|2.6^AAA_2|379-407|8.1^NTPase_1|384-412|3.5^GrpE|389-416|3.8 zf-C4-PARTIAL|~236-272|2.2e-35^Hormone_recep|336-516|7.7e-43^zf-C4|406-440|0.67 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr6] 14 2 14 2 ONLY_REF_SPLICE YES_LDAS 0.2001 GT 1.5628 AG 1.7465 ENST00000157812.7 1-673 ENST00000374685.8 236-1614 chr19|+|[0]39971203-39971238[2]|[0]39972146-39972244[2]|[0]39972369-39972555[0]|[1]39974294-39974440[0]|[1]39974524-39974633[2]|[0]39974735-39974828[0]<==>chr6|-|[2]33194682-33194829[2]|[1]33194945-33195050[1]|[0]33195363-33195466[2]|[1]33195570-33195702[1]|[0]33195907-33196036[0]|[2]33196434-33196606[1]|[0]33197762-33197941[1]|[0]33198308-33198464[0]|[2]33199169-33199416[1] atggaggagataggcatcttggtggagaaggctcaggatgagatcccagcactgtccgtgtcccggccccagaccggcctgtccttcctgggccctgagcctgaggacctggaggacctgtacagccgctacaagaagctgcagcaagagctggagttcctggaggtgcaggaggaatacatcaaagatgagcaaaagaacctgaaaaaggaatttctccatgcccaggaggaggtgaagcgaatccaaagcatcccgctggtcatcggacaatttctggaggctgtggatcagaatacagccatcgtgggctctaccacaggctccaactattatgtgcgcatcctgagcaccatcgatcgggagctgctcaagcccaacgcctcagtggccctccacaagcacagcaatgcactggtggacgtgctgccccccgaagccgacagcagcatcatgatgctcacctcagaccagaagccagatgtgatgtacgcggacatcggaggcatggacatccagaagcaggaggtgcgggaggccgtggagctcccgctcacgcatttcgagctctacaagcagatcggcatcgatcccccccgaggcgtcctcatgtatggcccacctggctgtgggaagaccatgttggcaaaggcggtggcacatcacacaacagACTCCCGAAGCCCAGACAGCTCCTCCCCAAATCCCCTTCCCCAGGGAGTCCCTCCCCCTTCTCCTCCTGGGCCACCCCTACCCCCTTCAACAGCTCCATCCCTTGGAGGCTCTGGGGCCCCACCCCCACCCCCGATGCCACCACCCCCACTGGGCTCTCCCTTTCCAGTCATCAGTTCTTCCATGGGGTCCCCTGGTCTGCCCCCTCCAGCTCCCCCAGGATTCTCCGGGCCTGTCAGCAGCCCCCAGATTAACTCAACAGTGTCACTCCCTGGGGGTGGGTCTGGCCCCCCTGAAGATGTGAAGCCACCAGTCTTAGGGGTCCGGGGCCTGCACTGTCCACCCCCTCCAGGTGGCCCTGGGGCTGGCAAACGGCTATGTGCAATCTGCGGGGACAGAAGCTCAGGCAAACACTACGGGGTTTACAGCTGTGAGGGTTGCAAGGGCTTCTTCAAACGCACCATCCGCAAAGACCTTACATACTCTTGCCGGGACAACAAAGACTGCACAGTGGACAAGCGCCAGCGGAACCGCTGTCAGTACTGCCGCTATCAGAAGTGCCTGGCCACTGGCATGAAGAGGGAGGCGGTACAGGAGGAGCGTCAGCGGGGAAAGGACAAGGATGGGGATGGGGAGGGGGCTGGGGGAGCCCCCGAGGAGATGCCTGTGGACAGGATCCTGGAGGCAGAGCTTGCTGTGGAACAGAAGAGTGACCAGGGCGTTGAGGGTCCTGGGGGAACCGGGGGTAGCGGCAGCAGCCCAAATGACCCTGTGACTAACATCTGTCAGGCAGCTGACAAACAGCTATTCACGCTTGTTGAGTGGGCGAAGAGGATCCCACACTTTTCCTCCTTGCCTCTGGATGATCAGGTCATATTGCTGCGGGCAGGCTGGAATGAACTCCTCATTGCCTCCTTCTCACACCGATCCATTGATGTTCGAGATGGCATCCTCCTTGCCACAGGTCTTCACGTGCACCGCAACTCAGCCCATTCAGCAGGAGTAGGAGCCATCTTTGATCGGTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCGTGACATGAGGATGGACAAGACAGAGCTTGGCTGCCTGAGGGCAATCATTCTGTTTAATCCAGATGCCAAGGGCCTCTCCAACCCTAGTGAGGTGGAGGTCCTGCGGGAGAAAGTGTATGCATCACTGGAGACCTACTGCAAACAGAAGTACCCTGAGCAGCAGGGACGGTTTGCCAAGCTGCTGCTACGTCTTCCTGCCCTCCGGTCCATTGGCCTTAAGTGTCTAGAGCATCTGTTTTTCTTCAAGCTCATTGGTGACACCCCCATCGACACCTTCCTCATGGAGATGCTTGAGGCTCCCCATCAACTGGCCTGA MEEIGILVEKAQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29111 PTPRM::MIB1 ENSG00000173482.17::ENSG00000101752.13 PANC0327 SRR8615436 SRR8670731 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 470 FALSE NA FALSE NA PTPRM ENSG00000173482.17 protein_coding + + chr18:7566782-8406861:+ chr18:7955414:+ chr18:7566780-8406859:+ chr18:7955412:+ MIB1 ENSG00000101752.13 protein_coding + + chr18:21704957-21870953:+ chr18:21864526:+ chr18:19284918-19450914:+ chr18:19444487:+ chr18:7987660,chr18:7987654 chr18:21828392,chr18:21828383 NA NA chr18:7987658,chr18:7987652 chr18:19408353,chr18:19408344 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MAM|27-182|2e-37^ig|35-51|6.5^Ig_2|35-60|2.6^I-set|191-267|2.2e-07^ig|192-270|3.7e-17^Ig_3|192-262|3.1e-06^Ig_2|194-278|2.4e-05^fn3|287-360|1.5e-09^Pur_ac_phosph_N|331-353|0.074^PTP_tm|336-354|0.22^Arylsulfotran_N|343-360|2.4^fn3|383-466|2.4e-06^Pur_ac_phosph_N|389-454|0.29^fn3|498-574|3.7e-13^Pur_ac_phosph_N|498-581|1.5e-05^EphA2_TM|516-531|9.4^Arylsulfotran_N|518-569|0.0016^fn3|598-629|0.033^PTP_tm|617-704|9.1e-05^fn3|686-708|0.59^Arylsulfotran_N|703-747|2.7^ECSCR|730-801|3e-06^DctM|742-786|0.00011^TM_ErbB1|743-776|4.7e-08^EphA2_TM|743-787|8.8e-05^PTP_tm|761-783|7.8^Y_phosphatase3|768-796|8.5^Y_phosphatase-PARTIAL|936-1132~|5.3e-91^PTPlike_phytase|1089-1124|3.7e-05^Y_phosphatase3-PARTIAL|1098-1132~|1.9e-05^DSPc-PARTIAL|1101-1132~|6.2e-06 none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:13.30Mb] 4 4 4 4 ONLY_REF_SPLICE YES_LDAS 0.1 GT 1.9086 AG 1.9899 ENST00000580170.6 1-1132 ENST00000261537.7 2881-3021 chr18|+|[0]7567819-7567891[0]|[1]7774149-7774271[0]|[1]7888106-7888377[2]|[0]7906505-7906583[0]|[1]7926568-7926683[2]|[0]7949181-7949355[0]|[1]7955121-7955414[0]<==>chr18|+|[0]21864526-21864666[2] atgaggggacttgggacttgcctggcgactttggccggacttttgctaactgcggcgggcgagacgttctcaggtggctgcctctttgatgagccgtatagcacatgtggatatagtcaatctgaaggtgatgacttcaattgggagcaagtgaacaccttgactaaaccgacttctgatccatggatgccatcaggttctttcatgctggtgaatgcctctgggagacctgaggggcagagagcccacctgctcttaccccaacttaaagaaaatgacacccactgcatcgattttcactattttgtgtccagcaagagtaattctcctccggggttactcaatgtctacgtgaaggtcaataacgggccactggggaatcctatctggaatatatctggagacccaacacgtacatggaacagggcagaactggccattagtactttctggcctaacttttatcaggtgatttttgaagtgataacttctggacatcaaggctatctcgctatcgatgaggtgaaggtgttaggacatccatgtaccaggactcctcacttcctgcggattcagaatgtggaagttaatgctggccagtttgctaccttccagtgcagtgccatcggcaggaccgtggcaggagacaggctctggttacagggcattgatgtgcgagatgctcctctgaaggaaatcaaggtgaccagctcccgacgcttcattgcttcatttaatgttgtgaataccaccaaacgagatgctggaaagtaccgctgcatgattcgcactgaaggaggtgttggaatatcaaactatgcagagttggtagttaaagaaccacccgttcctattgccccacctcagctcgcctctgtaggagccacctacctgtggatacagctcaacgccaactccatcaatggggatgggcccattgtggcccgagaggtggagtactgcacggccagtgggagctggaatgaccggcagccagtcgattccacgagctataaaattggacaccttgacccagatacagaatatgagattagtgtgctcctgaccaggccaggggagggtggcactggctctcctggtccagctctcaggacaagaacaaagtgtgctgACAATGTGCCCTGTGTGTCTAGATCGTCTGAAGAATATGATTTTCCTTTGTGGTCACGGAACCTGTCAACTCTGTGGAGACCGCATGAGTGAATGTCCTATCTGTCGCAAGGCTATTGAACGAAGGATTCTTTTGTATTAA MRGLGTCLATLAGLLLTAAGETFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADNVPCVSRSSEEYDFPLWSRNLSTLWRPHE*MSYLSQGY*TKDSFVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29121 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158633476:+ chr4:159236463-159574524:+ chr4:159554628:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr6] 506 252 506 206.66 ONLY_REF_SPLICE YES_LDAS 9.6058 GT 1.9899 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29122 TRPC4AP::AVPI1 ENSG00000100991.12::ENSG00000119986.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35044505:- chr20:33590207-33680610:- chr20:33632308:- AVPI1 ENSG00000119986.7 protein_coding - - chr10:97677424-97687241:- chr10:97679915:- chr10:99437181-99446998:- chr10:99439672:- chr20:35038503,chr20:35038515 chr10:97680021,chr10:97680030 NA NA chr20:33626306,chr20:33626318 chr10:99439778,chr10:99439787 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["AVPI1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr10] 194 151 194 151 ONLY_REF_SPLICE YES_LDAS 4.6502 GT 1.8295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29123 CLTC::RPS6KB1 ENSG00000141367.13::ENSG00000108443.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 474 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59910562:+ chr17:57970407-58027935:+ chr17:57987923:+ chr17:59643211,chr17:59643209,chr17:59643110 chr17:59904862,chr17:59904862,chr17:59904997 NA NA chr17:57720572,chr17:57720570,chr17:57720471 chr17:57982223,chr17:57982223,chr17:57982358 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel-PARTIAL|19-42~|2.1e-10 Pkinase-PARTIAL|~142-352|3.8e-74^PK_Tyr_Ser-Thr-PARTIAL|~142-335|8.3e-40^FTA2-PARTIAL|~142-151|0.018^ABC1|166-242|7.8e-07^DUF1015|173-215|0.00017^FTA2|200-225|0.0015^Kinase-like|207-335|1e-10^Pkinase_fungal|207-275|6.8e-08^Pkinase_C|373-413|1.7e-14^Pkinase|404-421|1.8 ["CLTC:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.20Mb] 183 100 183 100 ONLY_REF_SPLICE YES_LDAS 3.8145 GT 1.9329 AG 1.8062 ENST00000700709.1 1-42 ENST00000225577.9 142-1578 chr17|+|[0]59620132-59620173[2]<==>chr17|+|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]|[0]59926435-59926582[0]|[1]59930117-59930174[1]|[2]59931622-59931722[0]|[1]59934170-59934260[1]|[2]59934434-59934524[2]|[0]59935193-59935300[2]|[0]59936215-59936277[2]|[0]59936464-59936541[2]|[0]59940836-59940943[2]|[0]59945406-59945518[1]|[2]59946551-59946788[2] atggcccagattctgccaattcgttttcaggagcatctccagGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCACCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAGCCCAGTCAAATTTTCTCCTGGGGATTTCTGGGGAAGAGGTGCTTCGGCCAGCACAGCAAATCCTCAGACACCTGTGGAATACCCAATGGAAACAAGTGGCATAGAGCAGATGGATGTGACAATGAGTGGGGAAGCATCGGCACCACTTCCAATACGACAGCCGAACTCTGGGCCATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAATCTATGA MAQILPIRFQEHLQGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSFEPKIRSPRRFIGSPRTPVSPVKFSPGDFWGRGASASTANPQTPVEYPMETSGIEQMDVTMSGEASAPLPIRQPNSGPYKKQAFPMISKRPEHLRMNL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29125 RNH1::DEAF1 ENSG00000023191.17::ENSG00000177030.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 475 TRUE 892 TRUE 321 RNH1 ENSG00000023191.17 protein_coding - - chr11:494512-507300:- chr11:497971:- chr11:494512-507300:- chr11:497971:- DEAF1 ENSG00000177030.19 protein_coding - - chr11:644233-707118:- chr11:644654:- chr11:644233-707118:- chr11:644654:- chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRR_RI_capping|6-35|2e-20^LRR_1|31-43|1.4^LRR_4|46-71|0.0085^LRR_6|55-73|2.8e-05^LRR_8|56-69|0.0074^LRR_1|58-70|0.066^LRR_6|84-103|0.0017^LRR_4|86-127|3.6e-06^LRR_1|87-101|0.012^LRR_8|107-125|0.00064^LRR_6|112-134|8.4e-07^LRR_1|115-127|0.0064^LRR_4|143-182|0.057^LRR_1|143-157|0.049^LRR_8|143-154|0.95^LRR_6|144-163|0.39^LRR_6|173-191|0.0085^LRR_1|173-184|0.23^LRR_8|174-182|1.1^LRR_6|201-213|0.56^LRR_1|201-220|0.66^LRR_6|228-248|2.9e-06^LRR_4|228-266|0.0027^LRR_1|228-243|0.07^LRR_8|228-241|0.024^LRR_4|257-269|0.12^LRR_1|257-277|0.093^LRR_6|266-277|0.85^LRR_6|285-305|8.7e-08^LRR_4|285-301|0.004^LRR_1|285-300|0.0056^LRR_8|285-296|0.067^LRR_1|314-333|0.12^LRR_6|339-362|5.1e-06^LRR_4|343-382|0.0037^LRR_1|343-359|0.028^LRR_8|343-354|0.062^LRR_6|372-391|0.0069^LRR_4|372-413|1.6e-06^LRR_1|372-390|0.054^LRR_8|388-410|0.00024^LRR_6|397-418|9.5e-09^LRR_1|399-411|0.00027 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.14Mb] 101 60 101 51.79 ONLY_REF_SPLICE YES_LDAS 2.0595 GT 1.5301 AG 1.9086 ENST00000534797.5 1-1127 ENST00000382409.4 1594-1698 chr11|-|[1]497971-498141[2]|[1]498457-498627[2]|[1]498763-498933[2]|[1]499015-499185[2]|[1]499829-499999[2]|[1]500484-500654[2]|[1]502062-502162[0]<==>chr11|-|[2]644550-644654[0] atgagcctggacatccagagcctggacatccagtgtgaggagctgagcgacgctagatgggccgagctcctccctctgctccagcagtgccaagtggtcaggctggacgactgtggcctcacggaagcacggtgcaaggacatcagctctgcacttcgagtcaaccctgcactggcagagctcaacctgcgcagcaacgagctgggcgatgtcggcgtgcattgcgtgctccagggcctgcagaccccctcctgcaagatccagaagctgagcctccagaactgctgcctgacgggggccggctgcggggtcctgtccagcacactacgcaccctgcccaccctgcaggagctgcacctcagcgacaacctcttgggggatgcgggcctgcagctgctctgcgaaggactcctggacccccagtgccgcctggaaaagctgcagctggagtattgcagcctctcggctgccagctgcgagcccctggcctccgtgctcagggccaagccggacttcaaggagctcacggttagcaacaacgacatcaatgaggctggcgtccgtgtgctgtgccagggcctgaaggactccccctgccagctggaggcgctcaagctggagagctgcggtgtgacatcagacaactgccgggacctgtgcggcattgtggcctccaaggcctcgctgcgggagctggccctgggcagcaacaagctgggtgatgtgggcatggcggagctgtgcccagggctgctccaccccagctccaggctcaggaccctgtggatctgggagtgtggcatcactgccaagggctgcggggatctgtgccgtgtcctcagggccaaggagagcctgaaggagctcagcctggccggcaacgagctgggggatgagggtgcccgactgctgtgtgagaccctgctggaacctggctgccagctggagtcgctgtgggtgaagtcctgcagcttcacagccgcctgctgctcccacttcagctcagtgctggcccagaacaggtttctcctggagctacagataagcaacaacaggctggaggatgcgggcgtgcgggagctgtgccagggcctgggccagcctggctctgtgctgcgggtgctctgGACTGGAAGGATCACCAGCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGACGAAGTCCACGTGGCTGAAAGCGTGATGGAGAAGGTGACCGTGTGA MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWTGRITSTYAASQQLSPSRQTKSTWLKA*WRR*PC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 507113|506609 FALSE|FALSE 644654|644654 TRUE|TRUE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29126 RXFP1::LINC00243 ENSG00000171509.16::ENSG00000214894.7 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 888 TRUE 318 RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158633476:+ chr4:159236463-159574524:+ chr4:159554628:+ LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30814772:- chr6:30765988-30798436:- chr6:30782549:- chr4:158634569 chr6:30824222 NA NA chr4:159555721 chr6:30791999 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr6] 74 289 74 82.34 ONLY_REF_SPLICE YES_LDAS 2.1072 GT 1.9899 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29127 TBL1X::SHROOM2 ENSG00000101849.18::ENSG00000146950.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 477 FALSE NA FALSE NA TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9640360:+ chrX:9431360-9709077:+ chrX:9608400:+ SHROOM2 ENSG00000146950.13 protein_coding + + chrX:9786429-9949443:+ chrX:9937134:+ chrX:9754469-9917483:+ chrX:9905174:+ chrX:9651182,chrX:9651181 chrX:9936010,chrX:9936006 NA NA chrX:9619222,chrX:9619221 chrX:9904050,chrX:9904046 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.07Mb];NEIGHBORS[66713] 60 29 60 29 ONLY_REF_SPLICE YES_LDAS 1.1996 GT 1.9219 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29128 TBC1D8::C12orf75 ENSG00000204634.13::ENSG00000235162.9 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 479 FALSE NA FALSE NA TBC1D8 ENSG00000204634.13 protein_coding - - chr2:101007228-101252866:- chr2:101151127:- chr2:101623690-101869328:- chr2:101767589:- C12orf75 ENSG00000235162.9 protein_coding + + chr12:105235290-105396097:+ chr12:105348602:+ chr12:105629068-105789875:+ chr12:105742380:+ chr2:101125413,chr2:101125463,chr2:101125417 chr12:105332548,chr12:105332301,chr12:105332544 NA NA chr2:101741875,chr2:101741925,chr2:101741879 chr12:105726326,chr12:105726079,chr12:105726322 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none OCC1-PARTIAL|~47-62|3.2e-42 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr12] 41 15 41 15 ONLY_REF_SPLICE YES_LDAS 0.7548 GT 1.5329 AG 1.7819 ENST00000409318.2 1-127 ENST00000549934.2 47-267 chr2|-|[0]101151127-101151253[0]<==>chr12|+|[1]105348602-105348626[1]|[2]105365807-105365842[1]|[2]105366617-105366696[0]|[1]105367477-105367509[0]|[1]105370634-105370680[2] atgtggctcaagcccgaggaggtgctgctgaagaacgcgctgaagctctgggtgacccagaagagcagctgctacttcatcctgcagcggcgccgcgggcacggcgaggggggcggccgcctcaccgGCCCTGCAGGAGCAGCCAAAGATGTAACAGAAGAATCCGTAACAGAAGATGACAAGAGGAGAAACTATGGAGGAGTATATGTTGGCCTACCATCTGAAGCTGTCAATATGGTGTCCAGTCAAACAAAGACGGTTCGGAAAAAAGAAAATAACATCATGACTCAAGAATCAAGAGCTTGCTCATCAGTTTGGAAGGAATTTGGCTCCGTGGGACGTTGTAAT MWLKPEEVLLKNALKLWVTQKSSCYFILQRRRGHGEGGGRLTGPAGAAKDVTEESVTEDDKRRNYGGVYVGLPSEAVNMVSSQTKTVRKKENNIMTQESRACSSVWKEFGSVGRCN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29129 DEPDC1B::PDE4D ENSG00000035499.13::ENSG00000113448.21 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 480 FALSE NA FALSE NA DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59215968:- chr5:58264865-59817947:- chr5:58511794:- chr5:60671404,chr5:60671413 chr5:60485129,chr5:60485135 NA NA chr5:59967231,chr5:59967240 chr5:59780956,chr5:59780962 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DEP|28-106|6.3e-23^RhoGAP|69-81|0.52^RhoGAP-PARTIAL|270-314~|6.6e-12 PDEase_I-PARTIAL|~264-316|0.12^PDE4_UCR-PARTIAL|~264-275|3.8e-64^PDEase_I|397-636|5.4e-99 ["PDE4D:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.07Mb];NEIGHBORS[74792] 36 14 36 14 ONLY_REF_SPLICE YES_LDAS 0.6739 GT 1.9329 AG 1.8062 ENST00000453022.6 1-314 ENST00000507116.6 264-2238 chr5|-|[1]60686962-60687227[0]|[2]60700046-60700093[0]<==>chr5|-|[2]58974664-58975080[0]|[2]58975657-58975839[0]|[2]58976350-58976472[0]|[2]58977191-58977345[1]|[0]58988493-58988592[0]|[2]58989755-58989919[0]|[2]58990804-58990902[0]|[2]58991832-58992004[1]|[0]58993372-58993465[0]|[2]59038859-59038971[1]|[0]59180595-59180644[2]|[1]59185189-59185262[0]|[2]59193500-59193536[2]|[1]59215777-59215968[2] atggagcatcgcatcgtggggcccgggccgtaccgagctaccaggctgtggaatgagaccgtggagctttttcgtgctaagatgccgttacggaaacatcgctgtcgtttcaagagctatgagcattgtttcacagcggccgaagctgtggattggctgcatgagctgctgaggtgcagtcaaaacttcggccctgaagtgacccgcaaacaaacggtccagctgctaaaaaaattcctgaagaatcacgttattgaagacatcaagggaaaatggggtgaggaagattttgaagacaatcgtcacttatacagTTTTGATGTGGACAATGGCACATCTGCGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGATCCGGGCTAATTCTCCAAGCAAATTTTGTCCACAGTCAACGACGGGAGTCCTTCCTGTATCGATCCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATATACACGGAGATGACTTGATTGTGACTCCATTTGCTCAGGTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAAAAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAGAGGAGGCCTACCAGAAACTGGCCAGCGAGACCCTGGAGGAGCTGGACTGGTGTCTGGACCAGCTAGAGACCCTACAGACCAGGCACTCCGTCAGTGAGATGGCCTCCAACAAGTTTAAAAGGATGCTTAATCGGGAGCTCACCCATCTCTCTGAAATGAGTCGGTCTGGAAATCAAGTGTCAGAGTTTATATCAAACACATTCTTAGATAAGCAACATGAAGTGGAAATTCCTTCTCCAACTCAGAAGGAAAAGGAGAAAAAGAAAAGACCAATGTCTCAGATCAGTGGAGTCAAGAAATTGATGCACAGCTCTAGTCTGACTAATTCAAGTATCCCAAGGTTTGGAGTTAAAACTGAACAAGAAGATGTCCTTGCCAAGGAACTAGAAGATGTGAACAAATGGGGTCTTCATGTTTTCAGAATAGCAGAGTTGTCTGGTAACCGGCCCTTGACTGTTATCATGCACACCATTTTTCAGGAACGGGATTTATTAAAAACATTTAAAATTCCAGTAGATACTTTAATTACATATCTTATGACTCTCGAAGACCATTACCATGCTGATGTGGCCTATCACAACAATATCCATGCTGCAGATGTTGTCCAGTCTACTCATGTGCTATTATCTACACCTGCTTTGGAGGCTGTGTTTACAGATTTGGAGATTCTTGCAGCAATTTTTGCCAGTGCAATACATGATGTAGATCATCCTGGTGTGTCCAATCAATTTCTGATCAATACAAACTCTGAACTTGCCTTGATGTACAATGATTCCTCAGTCTTAGAGAACCATCATTTGGCTGTGGGCTTTAAATTGCTTCAGGAAGAAAACTGTGACATTTTCCAGAATTTGACCAAAAAACAAAGACAATCTTTAAGGAAAATGGTCATTGACATCGTACTTGCAACAGATATGTCAAAACACATGAATCTACTGGCTGATTTGAAGACTATGGTTGAAACTAAGAAAGTGACAAGCTCTGGAGTTCTTCTTCTTGATAATTATTCCGATAGGATTCAGGTTCTTCAGAATATGGTGCACTGTGCAGATCTGAGCAACCCAACAAAGCCTCTCCAGCTGTACCGCCAGTGGACGGACCGGATAATGGAGGAGTTCTTCCGCCAAGGAGACCGAGAGAGGGAACGTGGCATGGAGATAAGCCCCATGTGTGACAAGCACAATGCTTCCGTGGAAAAATCACAGGTGGGCTTCATAGACTATATTGTTCATCCCCTCTGGGAGACATGGGCAGACCTCGTCCACCCTGACGCCCAGGATATTTTGGACACTTTGGAGGACAATCGTGAATGGTACCAGAGCACAATCCCTCAGAGCCCCTCTCCTGCACCTGATGACCCAGAGGAGGGCCGGCAGGGTCAAACTGAGAAATTCCAGTTTGAACTAACTTTAGAGGAAGATGGTGAGTCAGACACGGAAAAGGACAGTGGCAGTCAAGTGGAAGAAGACACTAGCTGCAGTGACTCCAAGACTCTTTGTACTCAAGACTCAGAGTCTACTGAAATTCCCCTTGATGAACAGGTTGAAGAGGAGGCAGTAGGGGAAGAAGAGGAAAGCCAGCCTGAAGCCTGTGTCATAGATGATCGTTCTCCTGACACGTAA MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYSFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRESFLYRSDSDYDLSPKSMSRNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSKRSPMCNQPSINKATITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAPDDPEEGRQGQTEKFQFELTLEEDGESDTEKDSGSQVEEDTSCSDSKTLCTQDSESTEIPLDEQVEEEAVGEEEESQPEACVIDDRSPDT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29130 MSI2::MRPS23 ENSG00000153944.12::ENSG00000181610.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 478 FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57401471:+ chr17:55333212-55762050:+ chr17:55478832:+ MRPS23 ENSG00000181610.13 protein_coding - - chr17:57834781-57850056:- chr17:57841260:- chr17:55912142-55927417:- chr17:55918621:- chr17:57434297,chr17:57434295 chr17:57843738,chr17:57843740 NA NA chr17:55511658,chr17:55511656 chr17:55921099,chr17:55921101 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_7|22-87|3.3e-07^RRM_1|24-91|1.1e-20^RRM_3|25-48|0.041^SET1_RBD|36-58|0.0009^DUF4651|36-48|0.0052^Nup35_RRM_2|38-74|0.0034^PHM7_cyt|50-89|0.019^CSD|59-71|0.083^NID|66-96|0.047^RRM_7|110-177|5.2e-07^PHM7_cyt|110-180|0.00015^RRM_1|112-178|3.7e-18^Nup35_RRM_2|112-162|0.00092^RRM_3|115-173|0.005^DUF4651|121-147|0.02^SET1_RBD|125-137|0.081^CSD|145-179|0.00055^NID|155-188|0.00047 none ["MSI2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.15Mb] 31 18 31 18 ONLY_REF_SPLICE YES_LDAS 0.6604 GT 1.8892 AG 1.7465 ENST00000284073.7 1-405 ENST00000313608.13 216-573 chr17|+|[0]57256743-57256804[1]|[2]57257098-57257138[0]|[1]57257466-57257547[1]|[2]57258270-57258354[2]|[0]57262151-57262192[2]|[0]57401379-57401471[2]<==>chr17|-|[2]57839783-57839935[0]|[2]57840926-57841052[2]|[1]57841183-57841260[2] atggaggcaaatgggagccaaggcacctcgggcagcgccaacgactcccagcacgaccccggtaaaatgtttatcggtggactgagctggcagacctcaccagatagccttagagactattttagcaaatttggagaaattagagaatgtatggtcatgagagatcccactacgaaacgctccagaggcttcggtttcgtcacgttcgcagacccagcaagtgtagataaagtattaggtcagccccaccatgagttagattccaagacgattgaccccaaagttgcatttcctcgtcgagcgcaacccaagatggtcacaagaacaaagaaaatatttgtaggcgggttatctgcgaacacagtagtggaagatgtaaagcaatatttcgagcagtttggcaagGAAGTTTTATTCAGTGTATGGGTCTGGTCAAAGAGCTTTTGATCTATTCAATCCAAACTTCAAGTCTACCTGTCAACGGTTTGTGGAGAAGTACACTGAGCTACAGAAACTTGGAGAAACAGATGAAGAGAAGTTATTTGTGGAAACAGGGAAGGCTTTATTGGCAGAAGGTGTCATTTTAAGACGAGTAGGCGAAGCAAGGACTCAACACGGAGGTAGTCACGTTTCCCGGAAATCCGAACACTTGAGTGTCAGACCACAGACTGCGTTGGAAGAAAACGAGACTCAGAAAGAAGTTCCACAGGACCAGCATTTGGAGGCACCTGCAGACCAGTCGAAAGGTCTCTTGCCTCCCTGA MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKEVLFSVWVWSKSF*SIQSKLQVYLSTVCGEVH*ATETWRNR*REVICGNREGFIGRRCHFKTSRRSKDSTRR*SRFPEIRTLECQTTDCVGRKRDSERSSTGPAFGGTCRPVERSLASL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29131 NUMB::COL4A1 ENSG00000133961.21::ENSG00000187498.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 488 FALSE NA FALSE NA NUMB ENSG00000133961.21 protein_coding - - chr14:73275107-73458617:- chr14:73458493:- chr14:73741815-73925323:- chr14:73925199:- COL4A1 ENSG00000187498.16 protein_coding - - chr13:110148963-110307157:- chr13:110242734:- chr13:110801310-110959504:- chr13:110895081:- chr14:73310637,chr14:73310639 chr13:110259143,chr13:110259142 NA NA chr14:73777345,chr14:73777347 chr13:110911490,chr13:110911489 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr13] 28 0 28 0 ONLY_REF_SPLICE YES_LDAS 0.3774 GT 1.3383 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29135 DCTN4::ENSG00000290991 ENSG00000132912.13::ENSG00000290991.1 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DCTN4 ENSG00000132912.13 protein_coding - - chr5:150708440-150759095:- chr5:150715565:- chr5:150088002-150138657:- chr5:150095127:- ENSG00000290991 ENSG00000290991.1 lncRNA - - chr5:151366299-151436953:- chr5:151366658:- chr5:150745860-150816514:- chr5:150746219:- chr5:150711718,chr5:150711722 chr5:151401693,chr5:151401694 NA NA chr5:150091280,chr5:150091284 chr5:150781254,chr5:150781255 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 18 8 18 8 ONLY_REF_SPLICE YES_LDAS 0.3504 GT 1.9899 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29136 PPP1R18::RXFP1 ENSG00000146112.12::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 896 TRUE 325 PPP1R18 ENSG00000146112.12 protein_coding - - chr6:30676389-30687895:- chr6:30684408:- chr6:30644166-30655672:- chr6:30652185:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158422270:+ chr4:159236463-159574524:+ chr4:159343422:+ chr6:30683385,chr6:30683388 chr4:158402208,chr4:158402205 NA NA chr6:30651162,chr6:30651165 chr4:159323360,chr4:159323357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr4] 17 2 17 1.13 ONLY_REF_SPLICE YES_LDAS 0.2443 GT 1.3996 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29138 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32623719:+ chr10:32735068-33171802:+ chr10:32912647:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Amidohydro_1-PARTIAL|74-123~|1.8e-71^Amidohydro_3|75-88|0.00039 none ["GDA:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr10] 14 15 14 6.6 ONLY_REF_SPLICE YES_LDAS 0.2777 GT 1.5656 AG 1.6729 ENST00000238018.8 1-123 ENST00000302316.12 57-188 chr9|+|[0]72149560-72149682[2]<==>chr10|+|[0]32623719-32623817[2]|[0]32685970-32686002[2] atgtgtgccgctcagatgccgcccctggcgcacatcttccgagggacgttcgtccactccacctggacctgccccatggaggtgctgcgggatcacctcctcggcgtgagcgacagcggcaaaGCAGTACAAGAAACATGGTGCCGGCATCTGCTTCTGGCGAGGGCCTCAGGGAGCTTCTACTCGTGCAGGAAGGTGAAGTGGGAGCAGATATGTCACACGCTCATAATGAAGTACCAAATGAAAGGCTTGTAG MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKAVQETWCRHLLLARASGSFYSCRKVKWEQICHTLIMKYQMKGL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29141 RNH1::DEAF1 ENSG00000023191.17::ENSG00000177030.19 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 476 TRUE 892 TRUE 321 RNH1 ENSG00000023191.17 protein_coding - - chr11:494512-507300:- chr11:497971:- chr11:494512-507300:- chr11:497971:- DEAF1 ENSG00000177030.19 protein_coding - - chr11:644233-707118:- chr11:646555:- chr11:644233-707118:- chr11:646555:- chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA chr11:495040,chr11:495044 chr11:647328,chr11:647329 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LRR_RI_capping|6-35|2e-20^LRR_1|31-43|1.4^LRR_4|46-71|0.0085^LRR_6|55-73|2.8e-05^LRR_8|56-69|0.0074^LRR_1|58-70|0.066^LRR_6|84-103|0.0017^LRR_4|86-127|3.6e-06^LRR_1|87-101|0.012^LRR_8|107-125|0.00064^LRR_6|112-134|8.4e-07^LRR_1|115-127|0.0064^LRR_4|143-182|0.057^LRR_1|143-157|0.049^LRR_8|143-154|0.95^LRR_6|144-163|0.39^LRR_6|173-191|0.0085^LRR_1|173-184|0.23^LRR_8|174-182|1.1^LRR_6|201-213|0.56^LRR_1|201-220|0.66^LRR_6|228-248|2.9e-06^LRR_4|228-266|0.0027^LRR_1|228-243|0.07^LRR_8|228-241|0.024^LRR_4|257-269|0.12^LRR_1|257-277|0.093^LRR_6|266-277|0.85^LRR_6|285-305|8.7e-08^LRR_4|285-301|0.004^LRR_1|285-300|0.0056^LRR_8|285-296|0.067^LRR_1|314-333|0.12^LRR_6|339-362|5.1e-06^LRR_4|343-382|0.0037^LRR_1|343-359|0.028^LRR_8|343-354|0.062^LRR_6|372-391|0.0069^LRR_4|372-413|1.6e-06^LRR_1|372-390|0.054^LRR_8|388-410|0.00024^LRR_6|397-418|9.5e-09^LRR_1|399-411|0.00027 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.14Mb] 12 64 12 12.21 ONLY_REF_SPLICE YES_LDAS 0.3263 GT 1.5301 AG 1.6895 ENST00000534797.5 1-1127 ENST00000685854.1 1467-1800 chr11|-|[1]497971-498141[2]|[1]498457-498627[2]|[1]498763-498933[2]|[1]499015-499185[2]|[1]499829-499999[2]|[1]500484-500654[2]|[1]502062-502162[0]<==>chr11|-|[2]644550-644654[0]|[2]646327-646555[2] atgagcctggacatccagagcctggacatccagtgtgaggagctgagcgacgctagatgggccgagctcctccctctgctccagcagtgccaagtggtcaggctggacgactgtggcctcacggaagcacggtgcaaggacatcagctctgcacttcgagtcaaccctgcactggcagagctcaacctgcgcagcaacgagctgggcgatgtcggcgtgcattgcgtgctccagggcctgcagaccccctcctgcaagatccagaagctgagcctccagaactgctgcctgacgggggccggctgcggggtcctgtccagcacactacgcaccctgcccaccctgcaggagctgcacctcagcgacaacctcttgggggatgcgggcctgcagctgctctgcgaaggactcctggacccccagtgccgcctggaaaagctgcagctggagtattgcagcctctcggctgccagctgcgagcccctggcctccgtgctcagggccaagccggacttcaaggagctcacggttagcaacaacgacatcaatgaggctggcgtccgtgtgctgtgccagggcctgaaggactccccctgccagctggaggcgctcaagctggagagctgcggtgtgacatcagacaactgccgggacctgtgcggcattgtggcctccaaggcctcgctgcgggagctggccctgggcagcaacaagctgggtgatgtgggcatggcggagctgtgcccagggctgctccaccccagctccaggctcaggaccctgtggatctgggagtgtggcatcactgccaagggctgcggggatctgtgccgtgtcctcagggccaaggagagcctgaaggagctcagcctggccggcaacgagctgggggatgagggtgcccgactgctgtgtgagaccctgctggaacctggctgccagctggagtcgctgtgggtgaagtcctgcagcttcacagccgcctgctgctcccacttcagctcagtgctggcccagaacaggtttctcctggagctacagataagcaacaacaggctggaggatgcgggcgtgcgggagctgtgccagggcctgggccagcctggctctgtgctgcgggtgctctgGCCCCAGGGAGTGGCTCAAACCTGTAGACCAGAGAAGGAAGCATCTAGAACTCCTGGGGGCCTTGTCCGCCGCCCACATCCTCTCACGGGGGGCAGCTCCCATGAGGGGTGCAGGCCCCTCACCCCACACAGAGTCTCGGCAGGAACCGGAACCCTTCCTGGTTGCCCCAGAGTGGAGGCCCGGGAGGGGCGGGCGGTGGGTCTGCACCCGATGCTGCAGTTTGCTGATGACTGGAAGGATCACCAGCACATATGCGGCCAGTCAGCAGCTGTCACCGTCCAGGCAGACGAAGTCCACGTGGCTGAAAGCGTGATGGAGAAGGTGACCGTGTGA MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWPQGVAQTCRPEKEASRTPGGLVRRPHPLTGGSSHEGCRPLTPHRVSAGTGTLPGCPRVEAREGRAVGLHPMLQFADDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 507113|506609 FALSE|FALSE 644654|644654 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29142 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32685970:+ chr10:32735068-33171802:+ chr10:32974898:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["GDA:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr10] 11 12 11 3.39 ONLY_REF_SPLICE YES_LDAS 0.194 GT 1.5656 AG 1.8892 ENST00000376986.5 1-1 ENST00000639629.2 2123-4158 chr9|+|[0]72149682-72149682[0]<==>chr10|+|[1]32685970-32686080[0]|[1]32689053-32689163[0]|[1]32694879-32694992[0]|[1]32711620-32711730[0]|[1]32726734-32726832[0]|[1]32728887-32728997[0]|[1]32729332-32729457[0]|[1]32778977-32779084[0]|[1]32805015-32805098[0]|[1]32814370-32814453[0]|[1]32824518-32824604[0]|[1]32834815-32834898[0]|[1]32845243-32845326[0]|[1]32845543-32845626[0]|[1]32845876-32845959[0]|[1]32846376-32846459[0]|[1]32847833-32847916[0]|[1]32848596-32848718[0]|[1]32851807-32851932[0]|[1]32854400-32854489[0]|[1]32876347-32876393[2] aCTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAATAAAGAAACAAGAAACTTCTACAGAGCAACCACTCACCACTCCTGATAAAGAACCAAATGAAAATCTTATACTTAGGCATCAAGACTCAATGTCAAAATCAGAAATGCAAGTGAAGGAACAAAGAACTCTCAAAGGGCAAAGAATTATTACTCATGATGAAGAACCAGGCAAAAATCTTGTGCTTGAACATCAAGATTCAGTGTCAAAACTGGAAATGCAAATTGAAAAAACCAAAAAACTTCCTAGAGAGAAAAGACATAGTACTCATGATGAAGAATCAGGTGAAAATCCTATGCTTAAACATCAAGATTCAGTGTCAAAAATCCAAGTGCAATTAGAGATTCAAGAAACTTCTGAAGGAGAAGGACGTAGCATACCAGATAAAAATTCTATGTTTGTTCATCAAGATTCAGTGTCAAAACTCCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAGGCGTAATACTCGTATTGTAGTACCAAATGAAAATGTGATTTCTGTTCATCAAGATTCAAAGTCAAAACTCCAAATGCAAGAAAAGAAACAAATAAATTCTGGAGTGGAAAGACACAAGACGTTTCCTTTAGAAATCAAAAAAAAGGATATATCACTTGAACATCTGTTGCCTGAGGAGAAAGTTTTATTATCAAGAAGCGAATCTCAAACGAAGAAACTTCAAGCTAAAGTAACTTCAAGAAAAATTAAAAATGAAGCAGCCTCAGAACTTCCAGATACAGCAGAAAATCTTCCAGCAATGTACCCGTCAATTAGCGACCTAATAATTCAATTTGATTTAAACAAAGTGGTCGAGACTGATATAGAAAGCTTGAGAGGTGCTTTGGGAAGACGCTTATTAAATGATGAATTCAAGACACAGTCAAAGAGTTTCCCTGGGCCTGATATAGAACAATTGACAGATGCATTTGGAAGAGATATACTAAAGGATGAATTCAAGACACGATCAAAGAGTCTCCCTGAGACTGATGAACGATTGCATAGTACAACTGAGAGAGGTACAATAAATGATGCAATTAAGACGCAGTTAAAGAGAAAGAGTTACCCTGAGACTGTCTTAAAACACTTGAAAGGTGTTAATGGAAAAGATATAATAAAGCATCTAATCAACATACAGTCAAAGAGTCATGGAGAGACTGATAAGGAACACTTAGCAGATGATACTGGAAGAGGTATAATAAAGGGATCAATCAATGCACAACTAAAGGGTCACCAAAAGACTGATAAGAACTTCTTTGCCTATGCTACTGGAAGAGGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCACCCAGAGACTGATAAGGAATTCTTGGCAGATGCTATTGGAAGAGGTATAATAATAGGGCCAATCACTACACAACTGAAGAGTCACCGAGAGACTGATAAAGAACTCTTAAAAGATGCTATTGGAAGAGATATAATAAAGGGACCAATCAGTGCACAATTAAAGAGTCACCAGGAGACTGATGTAGAACCCTTGACAAATGCCATTGGTTCAAGTAAAACAATTGGTGAGATAAAGACACAACTAAGGACTCACTATGATGTGAACTTATTTAAAAACAAAGATATGTCCGTACAACGTCAAGAAGGTATCTTTACTAGGAGCATTACACCAAGTAAATTCCCAACAAAAGTGATCAATTTATCACCCTTTGAAAATAAAGAGGAAACTTATGAGTACTCTTCACCCTATGTGACTGCACCTTCAAAAGCAATTTATAGAACATATAGGGCTGGTCCAAGCTTTTCTAAAGACATCCACCTTCCTTTACTGAATCAACTCCCTTCAGGGCATTCGAAAGTTGTTACCTTAAGCCAAAAAACTATTGAATTTACTCTGCCTACTGTGACCAATACAGTTGGAAAACCTACCTATAAAGTGTTACATGCTGCTGCCCGAAAATCTGTACCACACCCATACTTTTGA THNEVPNERLVVEHQESLSKTKLQIKKQETSTEQPLTTPDKEPNENLILRHQDSMSKSEMQVKEQRTLKGQRIITHDEEPGKNLVLEHQDSVSKLEMQIEKTKKLPREKRHSTHDEESGENPMLKHQDSVSKIQVQLEIQETSEGEGRSIPDKNSMFVHQDSVSKLQMQEKKKITPGRERRNTRIVVPNENVISVHQDSKSKLQMQEKKQINSGVERHKTFPLEIKKKDISLEHLLPEEKVLLSRSESQTKKLQAKVTSRKIKNEAASELPDTAENLPAMYPSISDLIIQFDLNKVVETDIESLRGALGRRLLNDEFKTQSKSFPGPDIEQLTDAFGRDILKDEFKTRSKSLPETDERLHSTTERGTINDAIKTQLKRKSYPETVLKHLKGVNGKDIIKHLINIQSKSHGETDKEHLADDTGRGIIKGSINAQLKGHQKTDKNFFAYATGRGLMKESTTTQLKSHPETDKEFLADAIGRGIIIGPITTQLKSHRETDKELLKDAIGRDIIKGPISAQLKSHQETDVEPLTNAIGSSKTIGEIKTQLRTHYDVNLFKNKDMSVQRQEGIFTRSITPSKFPTKVINLSPFENKEETYEYSSPYVTAPSKAIYRTYRAGPSFSKDIHLPLLNQLPSGHSKVVTLSQKTIEFTLPTVTNTVGKPTYKVLHAAARKSVPHPYF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29143 NCK2::TMEM131 ENSG00000071051.14::ENSG00000075568.17 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 484 FALSE NA FALSE NA NCK2 ENSG00000071051.14 protein_coding + + chr2:105744912-105894274:+ chr2:105816613:+ chr2:106361369-106510730:+ chr2:106433070:+ TMEM131 ENSG00000075568.17 protein_coding - - chr2:97756333-97995948:- chr2:97888120:- chr2:98372796-98612411:- chr2:98504583:- chr2:105834882,chr2:105834881 chr2:97894313,chr2:97894314 NA NA chr2:106451338,chr2:106451337 chr2:98510776,chr2:98510777 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:7.75Mb] 11 4 11 4 ONLY_REF_SPLICE YES_LDAS 0.2022 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29144 PSME4::ASB3 ENSG00000068878.15::ENSG00000115239.24 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 481 FALSE NA FALSE NA PSME4 ENSG00000068878.15 protein_coding - - chr2:53864069-53970993:- chr2:53970543:- chr2:54091206-54198130:- chr2:54197680:- ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53716743:- chr2:53759810-54087297:- chr2:53943880:- chr2:53956964,chr2:53956973 chr2:53725278,chr2:53725284 NA NA chr2:54184101,chr2:54184110 chr2:53952415,chr2:53952421 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NAAA-beta|196-228|0.0017 SOCS_box-PARTIAL|~386-426|9.7e-16 ["DepMap2023"] 11 12 11 12 ONLY_REF_SPLICE YES_LDAS 0.31 GT 1.8323 AG 1.9086 ENST00000389993.7 1-242 ENST00000406687.5 386-1338 chr2|-|[1]53970543-53970784[0]<==>chr2|-|[2]53670503-53670690[1]|[0]53693884-53694014[2]|[1]53700271-53700528[2]|[1]53714384-53714581[2]|[1]53716566-53716743[1] atggagccggccgagcgggcgggagtcggagagcccccggagccgggcgggcgtcccgagccgggcccgcggggcttcgtcccgcagaaggagatcgtctacaacaagctgctgccctacgcggagcggctagacgccgagtccgacttgcagctggcccagatcaaatgcaacctgggccgggccgtgcagctccaagagctgtggcccgggggcctcttctggaccaggaaactctccacGTGCAAATGTCAATTGTCAAGCCTTGGACAAAGCTACACCCTTGTTCATTGCTGCTCAAGAGGGACACACAAAATGTGTGGAGCTTTTGCTCTCCAGTGGGGCAGATCCTGATCTTTACTGTAATGAGGACAGTTGGCAGTTACCTATTCATGCAGCTGCACAAATGGGCCATACAAAAATCTTGGACTTGTTAATACCACTTACTAACCGGGCCTGTGACACTGGGCTAAACAAAGTAAGCCCTGTTTACTCAGCAGTGTTTGGGGGACATGAAGATTGCCTAGAAATATTACTCCGGAATGGCTACAGCCCAGACGCCCAGGCGTGCCTTGTTTTTGGATTCAGTTCTCCTGTGTGCATGGCTTTCCAAAAGGACTGTGAGTTCTTTGGAATTGTGAACATTCTTTTGAAATATGGAGCCCAGATAAATGAACTTCATTTGGCATACTGCCTGAAGTACGAGAAGTTTTCGATATTTCGCTACTTTTTGAGGAAAGGTTGCTCATTGGGACCATGGAACCATATATATGAATTTGTAAATCATGCAATTAAAGCACAAGCAAAATATAAGGAGTGGTTGCCACATCTTCTGGTTGCTGGATTTGACCCACTGATTCTACTGTGCAATTCTTGGATTGACTCAGTCAGCATTGACACCCTTATCTTCACTTTGGAGTTTACTAATTGGAAGACACTTGCACCAGCTGTTGAAAGGATGCTCTCTGCTCGTGCCTCAAACGCTTGGATTCTACAGCAACATATTGCCACTGTTCCATCCCTGACCCATCTTTGTCGTTTGGAAATTCGGTCCAGTCTAAAATCAGAACGTCTACGGTCTGACAGTTATATTAGTCAGCTGCCACTTCCCAGAAGCCTACATAATTATTTGCTCTATGAAGACGTTCTGAGGATGTATGAAGTTCCAGAACTGGCAGCTATTCAAGATGGATAA MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLGRAVQLQELWPGGLFWTRKLSTCKCQLSSLGQSYTLVHCCSRGTHKMCGAFALQWGRS*SLL**GQLAVTYSCSCTNGPYKNLGLVNTTY*PGL*HWAKQSKPCLLSSVWGT*RLPRNITPEWLQPRRPGVPCFWIQFSCVHGFPKGL*VLWNCEHSFEIWSPDK*TSFGILPEVREVFDISLLFEERLLIGTMEPYI*ICKSCN*STSKI*GVVATSSGCWI*PTDSTVQFLD*LSQH*HPYLHFGVY*LEDTCTSC*KDALCSCLKRLDSTATYCHCSIPDPSLSFGNSVQSKIRTSTV*QLY*SAATSQKPT*LFAL*RRSEDV*SSRTGSYSRWI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29145 PPP1R18::RXFP1 ENSG00000146112.12::ENSG00000171509.16 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 896 TRUE 325 PPP1R18 ENSG00000146112.12 protein_coding - - chr6:30676389-30687895:- chr6:30684408:- chr6:30644166-30655672:- chr6:30652185:- RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158409323:+ chr4:159236463-159574524:+ chr4:159330475:+ chr6:30683385,chr6:30683388 chr4:158402208,chr4:158402205 NA NA chr6:30651162,chr6:30651165 chr4:159323360,chr4:159323357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr4] 10 5 10 3.87 INCL_NON_REF_SPLICE YES_LDAS 0.187 GT 1.3996 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29146 EXT1::TSG101 ENSG00000182197.13::ENSG00000074319.13 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 483 FALSE NA FALSE NA EXT1 ENSG00000182197.13 protein_coding - - chr8:117794490-118111826:- chr8:118110085:- chr8:118806729-119124065:- chr8:119122324:- TSG101 ENSG00000074319.13 protein_coding - - chr11:18468336-18526951:- chr11:18484072:- chr11:18489883-18548498:- chr11:18505619:- chr8:117881314,chr8:117881319 chr11:18489566,chr11:18489568 NA NA chr8:118893553,chr8:118893558 chr11:18511113,chr11:18511115 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Exostosin|111-395|2.7e-70^Glyco_transf_64|480-729|6.3e-107 none ["EXT1:Oncogene"];["TSG101:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr11] 10 4 10 4 ONLY_REF_SPLICE YES_LDAS 0.1887 GT 1.8892 AG 1.9219 ENST00000378204.7 1-962 ENST00000251968.4 641-1173 chr8|-|[1]118110085-118111046[0]<==>chr11|-|[2]18480546-18480635[0]|[2]18481630-18481869[0]|[2]18483870-18484072[1] atgcaggccaaaaaacgctatttcatcctgctctcagctggctcttgtctcgcccttttgttttatttcggaggcttgcagtttagggcatcgaggagccacagccggagagaagaacacagcggtaggaatggcttgcaccaccccagtccggatcatttctggccccgcttcccggacgctctgcgccccttcgttccttgggatcaattggaaaacgaggattccagcgtgcacatttccccccggcagaagcgagatgccaactccagcatctacaaaggcaagaagtgccgcatggagtcctgcttcgatttcaccctttgcaagaaaaacggcttcaaagtctacgtatacccacagcaaaaaggggagaaaatcgccgaaagttaccaaaacattctagcggccatcgagggctccaggttctacacctcggaccccagccaggcgtgcctctttgtcctgagtctggatactttagacagagaccagttgtcacctcagtatgtgcacaatttgagatccaaagtgcagagtctccacttgtggaacaatggtaggaatcatttaatttttaatttatattccggcacttggcctgactacaccgaggacgtggggtttgacatcggccaggcgatgctggccaaagccagcatcagtactgaaaacttccgacccaactttgatgtttctattcccctcttttctaaggatcatcccaggacaggaggggagagggggtttttgaagttcaacaccatccctcctctcaggaagtacatgctggtattcaaggggaagaggtacctgacagggataggatcagacaccaggaatgccttatatcacgtccataacggggaggacgttgtgctcctcaccacctgcaagcatggcaaagactggcaaaagcacaaggattctcgctgtgacagagacaacaccgagtatgagaaGTCCCAGTAGGGATGGCACAATCAGCGAGGACACCATCCGAGCCTCTCTCATCTCTGCGGTCAGTGACAAACTGAGATGGCGGATGAAGGAGGAAATGGATCGTGCCCAGGCAGAGCTCAATGCCTTGAAACGAACAGAAGAAGACCTGAAAAAGGGTCACCAGAAACTGGAAGAGATGGTTACCCGTTTAGATCAAGAAGTAGCCGAGGTTGATAAAAACATAGAACTTTTGAAAAAGAAGGATGAAGAACTCAGTTCTGCTCTGGAAAAAATGGAAAATCAGTCTGAAAACAATGATATCGATGAAGTTATCATTCCCACAGCTCCCTTATACAAACAGATCCTGAATCTGTATGCAGAAGAAAACGCTATTGAAGACACTATCTTTTACTTGGGAGAAGCCTTGAGAAGGGGCGTGATAGACCTGGATGTCTTCCTGAAGCATGTACGTCTTCTGTCCCGTAAACAGTTCCAGCTGAGGGCACTAATGCAAAAAGCAAGAAAGACTGCCGGTCTCAGTGACCTCTACTGA MQAKKRYFILLSAGSCLALLFYFGGLQFRASRSHSRREEHSGRNGLHHPSPDHFWPRFPDALRPFVPWDQLENEDSSVHISPRQKRDANSSIYKGKKCRMESCFDFTLCKKNGFKVYVYPQQKGEKIAESYQNILAAIEGSRFYTSDPSQACLFVLSLDTLDRDQLSPQYVHNLRSKVQSLHLWNNGRNHLIFNLYSGTWPDYTEDVGFDIGQAMLAKASISTENFRPNFDVSIPLFSKDHPRTGGERGFLKFNTIPPLRKYMLVFKGKRYLTGIGSDTRNALYHVHNGEDVVLLTTCKHGKDWQKHKDSRCDRDNTEYEKSQ*GWHNQRGHHPSLSHLCGQ*QTEMADEGGNGSCPGRAQCLETNRRRPEKGSPETGRDGYPFRSRSSRG**KHRTFEKEG*RTQFCSGKNGKSV*KQ*YR*SYHSHSSLIQTDPESVCRRKRY*RHYLLLGRSLEKGRDRPGCLPEACTSSVP*TVPAEGTNAKSKKDCRSQ*PLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE multiple exostoses type 1 gene 1 exostoses, osteosarcoma multiple exostoses type 1 mesenchymal TSG, fusion missense, nonsense, frameshift, splice_site, translocation FALSE NA NA NA NA NA NA NA NA NA 29147 RELB::NECTIN2 ENSG00000104856.15::ENSG00000130202.10 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 482 FALSE NA FALSE NA RELB ENSG00000104856.15 protein_coding + + chr19:45001461-45038192:+ chr19:45002996:+ chr19:45504719-45541450:+ chr19:45506254:+ NECTIN2 ENSG00000130202.10 protein_coding + + chr19:44846175-44889223:+ chr19:44865271:+ chr19:45349432-45392480:+ chr19:45368528:+ chr19:45003858,chr19:45003853 chr19:44852791,chr19:44852783 NA NA chr19:45507116,chr19:45507111 chr19:45356048,chr19:45356040 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RelB_leu_zip|18-102|3.5e-44^RHD_DNA_bind-PARTIAL|127-154~|8.1e-69 Ig_3-PARTIAL|~89-141|1.1e-05^V-set-PARTIAL|~89-158|6.6e-12^Ig_2-PARTIAL|~89-141|0.0016^ig|114-148|6e-05^I-set|117-141|0.00019^Izumo-Ig|121-150|0.0002^Ig_3|162-241|0.0011^Ig_2|162-197|0.81^C2-set_2|168-248|6e-21^I-set|178-243|0.0093^ig|183-249|0.00025^C1-set|193-244|0.00029^TonB_C|218-262|0.00018^V-set|253-288|0.098^Ig_3|260-333|1.1e-08^ig|278-341|5.2e-07^I-set|278-338|0.0012^Ig_2|278-337|2.8e-05^C2-set_2|306-333|1.2 ["RELB:Oncogene"];["CCLE_StarF2019"] 10 12 10 12 ONLY_REF_SPLICE YES_LDAS 0.2965 GT 1.9899 AG 1.8892 ENST00000221452.13 1-154 ENST00000252483.10 89-1617 chr19|+|[0]45001580-45001685[0]|[1]45002949-45002996[0]<==>chr19|+|[1]44865271-44865660[0]|[1]44871853-44872149[0]|[1]44873916-44874033[1]|[2]44874330-44874478[0]|[1]44882211-44882364[1]|[2]44885937-44886000[2]|[0]44886133-44886219[2]|[0]44888110-44888379[2] atgcttcggtctgggccagcctctgggccgtccgtccccactggccgggccatgccgagtcgccgcgtcgccagaccgccggctgcgccggagctgggggccttagggtcccccgacctctcctcactctcgctcgccgtttccaggagcacagGAGCCCAGGATGTGCGAGTTCAAGTGCTACCCGAGGTGCGAGGCCAGCTCGGGGGCACCGTGGAGCTGCCGTGCCACCTGCTGCCACCTGTTCCTGGACTGTACATCTCCCTGGTGACCTGGCAGCGCCCAGATGCACCTGCGAACCACCAGAATGTGGCCGCCTTCCACCCTAAGATGGGTCCCAGCTTCCCCAGCCCGAAGCCTGGCAGCGAGCGGCTGTCCTTCGTCTCTGCCAAGCAGAGCACTGGGCAAGACACAGAGGCAGAGCTCCAGGACGCCACGCTGGCCCTCCACGGGCTCACGGTGGAGGACGAGGGCAACTACACTTGCGAGTTTGCCACCTTCCCCAAGGGGTCCGTCCGAGGGATGACCTGGCTCAGAGTCATAGCCAAGCCCAAGAACCAAGCTGAGGCCCAGAAGGTCACGTTCAGCCAGGACCCTACGACAGTGGCCCTCTGCATCTCCAAAGAGGGCCGCCCACCTGCCCGGATCTCCTGGCTCTCATCCCTGGACTGGGAAGCCAAAGAGACTCAGGTGTCAGGGACCCTGGCCGGAACTGTCACTGTCACCAGCCGCTTCACCTTGGTGCCCTCGGGCCGAGCAGATGGTGTCACGGTCACCTGCAAAGTGGAGCATGAGAGCTTCGAGGAACCAGCCCTGATACCTGTGACCCTCTCTGTACGCTACCCTCCTGAAGTGTCCATCTCCGGCTATGATGACAACTGGTACCTCGGCCGTACTGATGCCACCCTGAGCTGTGACGTCCGCAGCAACCCAGAGCCCACGGGCTATGACTGGAGCACGACCTCAGGCACCTTCCCGACCTCCGCAGTGGCCCAGGGCTCCCAGCTGGTCATCCACGCAGTGGACAGTCTGTTCAATACCACCTTCGTCTGCACAGTCACCAATGCCGTGGGCATGGGCCGCGCTGAGCAGGTCATCTTTGTCCGAGAGACCCCCAACACAGCAGGCGCAGGGGCCACAGGCGGCATCATCGGGGGCATCATCGCCGCCATCATTGCTACTGCTGTGGCTGCCACGGGCATCCTTATCTGCCGGCAGCAGCGGAAGGAGCAGACGCTGCAGGGGGCAGAGGAGGACGAAGACCTGGAGGGACCTCCCTCCTACAAGCCACCGACCCCAAAAGCGAAGCTGGAGGCACAGGAGATGCCCTCCCAGCTCTTCACTCTGGGGGCCTCGGAGCACAGCCCACTCAAGACCCCCTACTTTGATGCTGGCGCCTCATGCACTGAGCAGGAAATGCCTCGATACCATGAGCTGCCCACCTTGGAAGAACGGTCAGGACCCTTGCACCCTGGAGCCACAAGCCTGGGGTCCCCCATCCCGGTGCCTCCAGGGCCACCTGCTGTGGAAGACGTTTCCCTGGATCTAGAGGATGAGGAGGGGGAGGAGGAGGAAGAGTATCTGGACAAGATCAACCCCATCTATGATGCTCTGTCCTATAGCAGCCCCTCTGATTCCTACCAGGGCAAAGGCTTTGTCATGTCCCGGGCCATGTATGTGTGA MLRSGPASGPSVPTGRAMPSRRVARPPAAPELGALGSPDLSSLSLAVSRSTGAQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRVIAKPKNQAEAQKVTFSQDPTTVALCISKEGRPPARISWLSSLDWEAKETQVSGTLAGTVTVTSRFTLVPSGRADGVTVTCKVEHESFEEPALIPVTLSVRYPPEVSISGYDDNWYLGRTDATLSCDVRSNPEPTGYDWSTTSGTFPTSAVAQGSQLVIHAVDSLFNTTFVCTVTNAVGMGRAEQVIFVRETPNTAGAGATGGIIGGIIAAIIATAVAATGILICRQQRKEQTLQGAEEDEDLEGPPSYKPPTPKAKLEAQEMPSQLFTLGASEHSPLKTPYFDAGASCTEQEMPRYHELPTLEERSGPLHPGATSLGSPIPVPPGPPAVEDVSLDLEDEEGEEEEEYLDKINPIYDALSYSSPSDSYQGKGFVMSRAMYV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29150 GDA::CCDC7 ENSG00000119125.17::ENSG00000216937.14 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 897 TRUE 326 GDA ENSG00000119125.17 protein_coding + + chr9:72114595-72257193:+ chr9:72149682:+ chr9:74729511-74872109:+ chr9:74764598:+ CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32584232:+ chr10:32735068-33171802:+ chr10:32873160:+ chr9:72160061,chr9:72160059 chr10:32578876,chr10:32578867 NA NA chr9:74774977,chr9:74774975 chr10:32867804,chr10:32867795 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Amidohydro_1-PARTIAL|74-123~|1.8e-71^Amidohydro_3|75-88|0.00039 none ["GDA:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr10] 7 18 7 7.72 ONLY_REF_SPLICE YES_LDAS 0.1985 GT 1.5656 AG 1.9329 ENST00000238018.8 1-123 ENST00000639629.2 1729-4158 chr9|+|[0]72149560-72149682[2]<==>chr10|+|[0]32584232-32584304[0]|[1]32634254-32634364[0]|[1]32635057-32635158[0]|[1]32664054-32664161[0]|[1]32685970-32686080[0]|[1]32689053-32689163[0]|[1]32694879-32694992[0]|[1]32711620-32711730[0]|[1]32726734-32726832[0]|[1]32728887-32728997[0]|[1]32729332-32729457[0]|[1]32778977-32779084[0]|[1]32805015-32805098[0]|[1]32814370-32814453[0]|[1]32824518-32824604[0]|[1]32834815-32834898[0]|[1]32845243-32845326[0]|[1]32845543-32845626[0]|[1]32845876-32845959[0]|[1]32846376-32846459[0]|[1]32847833-32847916[0]|[1]32848596-32848718[0]|[1]32851807-32851932[0]|[1]32854400-32854489[0]|[1]32876347-32876393[2] atgtgtgccgctcagatgccgcccctggcgcacatcttccgagggacgttcgtccactccacctggacctgccccatggaggtgctgcgggatcacctcctcggcgtgagcgacagcggcaaaGCTGATGTTTCAGAAGAACAATTACAAAAGATGACTGAAGAACAAACTTACCAAGCAGCAGAAAAATCTCAAGCTGACAGTGAAGTTCCAGATGAAAATCTTATGGTTGAAAATAAAGATTCAGTAACAAAAGTCCAAATAGAACAAATGAAACAAAGAACTTCTAGTATGGAAAGACATGAGGAGACTCTTACAACCCCACAATTGCCTGAGGACATGGTTTTAGTTTCAAGAATCCAATCTGAAACTAAAAATCTTAAAGCTACCAGAAATGAGAGTTTTCATTCTCATAATGATGTACCAGAAGAAAATCTTATGCTTGAACAAGACACAAAGTCAAAAACGGAAGTAGAAGTAAAGAAACAAAAATCTTTCCAAGATAATCAACTCAGTACTCATAATGAAGTACCAAATGAAAGGCTTGTAGTTGAGCATCAAGAATCATTGTCAAAAACCAAATTACAAATAAAGAAACAAGAAACTTCTACAGAGCAACCACTCACCACTCCTGATAAAGAACCAAATGAAAATCTTATACTTAGGCATCAAGACTCAATGTCAAAATCAGAAATGCAAGTGAAGGAACAAAGAACTCTCAAAGGGCAAAGAATTATTACTCATGATGAAGAACCAGGCAAAAATCTTGTGCTTGAACATCAAGATTCAGTGTCAAAACTGGAAATGCAAATTGAAAAAACCAAAAAACTTCCTAGAGAGAAAAGACATAGTACTCATGATGAAGAATCAGGTGAAAATCCTATGCTTAAACATCAAGATTCAGTGTCAAAAATCCAAGTGCAATTAGAGATTCAAGAAACTTCTGAAGGAGAAGGACGTAGCATACCAGATAAAAATTCTATGTTTGTTCATCAAGATTCAGTGTCAAAACTCCAAATGCAAGAAAAGAAAAAAATAACTCCTGGAAGGGAAAGGCGTAATACTCGTATTGTAGTACCAAATGAAAATGTGATTTCTGTTCATCAAGATTCAAAGTCAAAACTCCAAATGCAAGAAAAGAAACAAATAAATTCTGGAGTGGAAAGACACAAGACGTTTCCTTTAGAAATCAAAAAAAAGGATATATCACTTGAACATCTGTTGCCTGAGGAGAAAGTTTTATTATCAAGAAGCGAATCTCAAACGAAGAAACTTCAAGCTAAAGTAACTTCAAGAAAAATTAAAAATGAAGCAGCCTCAGAACTTCCAGATACAGCAGAAAATCTTCCAGCAATGTACCCGTCAATTAGCGACCTAATAATTCAATTTGATTTAAACAAAGTGGTCGAGACTGATATAGAAAGCTTGAGAGGTGCTTTGGGAAGACGCTTATTAAATGATGAATTCAAGACACAGTCAAAGAGTTTCCCTGGGCCTGATATAGAACAATTGACAGATGCATTTGGAAGAGATATACTAAAGGATGAATTCAAGACACGATCAAAGAGTCTCCCTGAGACTGATGAACGATTGCATAGTACAACTGAGAGAGGTACAATAAATGATGCAATTAAGACGCAGTTAAAGAGAAAGAGTTACCCTGAGACTGTCTTAAAACACTTGAAAGGTGTTAATGGAAAAGATATAATAAAGCATCTAATCAACATACAGTCAAAGAGTCATGGAGAGACTGATAAGGAACACTTAGCAGATGATACTGGAAGAGGTATAATAAAGGGATCAATCAATGCACAACTAAAGGGTCACCAAAAGACTGATAAGAACTTCTTTGCCTATGCTACTGGAAGAGGTCTAATGAAGGAGTCAACCACGACACAATTAAAAAGTCACCCAGAGACTGATAAGGAATTCTTGGCAGATGCTATTGGAAGAGGTATAATAATAGGGCCAATCACTACACAACTGAAGAGTCACCGAGAGACTGATAAAGAACTCTTAAAAGATGCTATTGGAAGAGATATAATAAAGGGACCAATCAGTGCACAATTAAAGAGTCACCAGGAGACTGATGTAGAACCCTTGACAAATGCCATTGGTTCAAGTAAAACAATTGGTGAGATAAAGACACAACTAAGGACTCACTATGATGTGAACTTATTTAAAAACAAAGATATGTCCGTACAACGTCAAGAAGGTATCTTTACTAGGAGCATTACACCAAGTAAATTCCCAACAAAAGTGATCAATTTATCACCCTTTGAAAATAAAGAGGAAACTTATGAGTACTCTTCACCCTATGTGACTGCACCTTCAAAAGCAATTTATAGAACATATAGGGCTGGTCCAAGCTTTTCTAAAGACATCCACCTTCCTTTACTGAATCAACTCCCTTCAGGGCATTCGAAAGTTGTTACCTTAAGCCAAAAAACTATTGAATTTACTCTGCCTACTGTGACCAATACAGTTGGAAAACCTACCTATAAAGTGTTACATGCTGCTGCCCGAAAATCTGTACCACACCCATACTTTTGA MCAAQMPPLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKADVSEEQLQKMTEEQTYQAAEKSQADSEVPDENLMVENKDSVTKVQIEQMKQRTSSMERHEETLTTPQLPEDMVLVSRIQSETKNLKATRNESFHSHNDVPEENLMLEQDTKSKTEVEVKKQKSFQDNQLSTHNEVPNERLVVEHQESLSKTKLQIKKQETSTEQPLTTPDKEPNENLILRHQDSMSKSEMQVKEQRTLKGQRIITHDEEPGKNLVLEHQDSVSKLEMQIEKTKKLPREKRHSTHDEESGENPMLKHQDSVSKIQVQLEIQETSEGEGRSIPDKNSMFVHQDSVSKLQMQEKKKITPGRERRNTRIVVPNENVISVHQDSKSKLQMQEKKQINSGVERHKTFPLEIKKKDISLEHLLPEEKVLLSRSESQTKKLQAKVTSRKIKNEAASELPDTAENLPAMYPSISDLIIQFDLNKVVETDIESLRGALGRRLLNDEFKTQSKSFPGPDIEQLTDAFGRDILKDEFKTRSKSLPETDERLHSTTERGTINDAIKTQLKRKSYPETVLKHLKGVNGKDIIKHLINIQSKSHGETDKEHLADDTGRGIIKGSINAQLKGHQKTDKNFFAYATGRGLMKESTTTQLKSHPETDKEFLADAIGRGIIIGPITTQLKSHRETDKELLKDAIGRDIIKGPISAQLKSHQETDVEPLTNAIGSSKTIGEIKTQLRTHYDVNLFKNKDMSVQRQEGIFTRSITPSKFPTKVINLSPFENKEETYEYSSPYVTAPSKAIYRTYRAGPSFSKDIHLPLLNQLPSGHSKVVTLSQKTIEFTLPTVTNTVGKPTYKVLHAAARKSVPHPYF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29151 CCDC7::C9orf85 ENSG00000216937.14::ENSG00000155621.15 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC7 ENSG00000216937.14 protein_coding + + chr10:32446140-32882874:+ chr10:32686080:+ chr10:32735068-33171802:+ chr10:32975008:+ C9orf85 ENSG00000155621.15 protein_coding + + chr9:71911510-71986054:+ chr9:71982657:+ chr9:74526426-74600970:+ chr9:74597573:+ chr10:32687010,chr10:32687006 chr9:71976644,chr9:71976637 NA NA chr10:32975938,chr10:32975934 chr9:74591560,chr9:74591553 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BioT2|1-170|1e-93^BioT2|233-313|0.069^BioT2|327-408|1^PSII_Pbs31|327-363|0.00034^BioT2|514-562|0.1^PSII_Pbs31|764-782|0.75^BioT2|948-969|0.89 none INTERCHROMOSOMAL[chr10--chr9] 6 2 6 2 ONLY_REF_SPLICE YES_LDAS 0.1079 GT 1.5628 AG 1.9086 ENST00000639629.2 1-2233 ENST00000377031.7 324-540 chr10|+|[0]32451643-32451921[2]|[0]32453344-32453436[2]|[0]32456251-32456334[2]|[0]32462683-32462703[2]|[0]32463017-32463049[2]|[0]32471064-32471230[1]|[2]32472481-32472542[0]|[1]32473967-32474023[0]|[1]32491922-32491997[1]|[2]32517945-32517975[2]|[0]32518416-32518505[2]|[0]32543300-32543385[1]|[2]32544247-32544301[2]|[0]32565558-32565620[2]|[0]32567670-32567891[2]|[0]32571859-32571893[1]|[2]32583034-32583307[2]|[0]32584232-32584304[0]|[1]32634254-32634364[0]|[1]32635057-32635158[0]|[1]32664054-32664161[0]|[1]32685970-32686080[0]<==>chr9|+|[2]71982657-71982873[2] atgaaaccagtaaagcatctgttgaccaccagtaacaaatcggcaaatgttccagcattaactactaaaaaaggactacataatttaccattatcacctgagctaaaggaaaaacataatgcaaaattaattcatgataaaattgaaccaatggtcctaagatctccaccaacaggagaatccattttacggtatgctttgcccattccatcgagtaagacaaagaacttactaccagaagatgaaatgatcggaaaaattatcaaacatctgaagatggttgtttccactttggaagaaacctatggacattgcgatcagaatggagaagaaccatttgtaaagcatgaacatgaagaattatctttatctgttggggatgatatgaattcattcttgacatattgttcgcaatttgcagctcagctagaagaagcacttaaagaagaacaaaatattttggaatctctttttaagtggtttcagtggcaggtcaatcagatggaagaaataagtaaagatcaaactcttttacaagcagagcctccaaaacctgacaaaacagtcattttaaatattgcagaaatagtaaggcttgtacaaagatttgaagaactgaagaatcgccttaaacagaggtctaaatcctccgtgaaagtcatgttgtctaaaactatggataaagaaaatcgaccagaagcagtgaaaagttgtgaagctctggcacagaaaattgaagaattcttagaagcccactcaactgatgaatttaaagatgtttctgcaacagaaccacaaactgctcattcaatgactaatcgatttaatgccatgttgaaagtatttgaaaaccaggcaaatatgttggagagagctgtaaatgatcaagttttgttagatgctgaatacaaacagatgcagtgtgattttcagttgttatcagaagagaagttggtgctggaaaatgaactacaaaagttgaaggacaaagagaaaactaagcctacaaataatcgaacaaagaaagctgtgaaaacagtgaagaaaaaagacaaaggaaaatctgaggattcagaaaagaagatgtctccagaaaaagagtttaaaataaaagaagatttggatcaagtacagaaagtagcacgtctggaaattgagaacaaagtccttcaggagcaattgaaacaggctttacaggaagctgaaaaagctaagcatcaacttaactatttcctaaatcaagagaagttacttaaaagtgaggggaaaactgagacaacaatgcaagtgggtaatagtcaaacaaaagttaaaggtgaagattcaaaaaatataccattggagaaagaaacaagaaaatcactggtttcagattcaggtggacaaaggacaagtgataaaatccaagaatatccacagatcactgcccaaagcggaagactgattgaaaagagctcagagaagaaacgatctagccctgctatttcagatctttcacagatccttaagtctcaagatgaatcagcatttttagagagttcaaatgaagtttcagttgctgaaaaccaatcctataaatctccatcagagacccatgataaatcacttacaacagtatcatccagcaaagaagttcaagattcactgtctgttggaacattggctcaaaaaaacgaaacagtgatatcaccattcattttacctcctgttcttacagaaagtaaaaaggctgatgtttcagaagaacaattacaaaagatgactgaagaacaaacttaccaagcagcagaaaaatctcaagctgacagtgaagttccagatgaaaatcttatggttgaaaataaagattcagtaacaaaagtccaaatagaacaaatgaaacaaagaacttctagtatggaaagacatgaggagactcttacaaccccacaattgcctgaggacatggttttagtttcaagaatccaatctgaaactaaaaatcttaaagctaccagaaatgagagttttcattctcataatgatgtaccagaagaaaatcttatgcttgaacaagacacaaagtcaaaaacggaagtagaagtaaagaaacaaaaatctttccaagataatcaactcagtactcataatgaagtaccaaatgaaaggcttgtagttgagcatcaagaatcattgtcaaaaaccaaattacaaataaagaaacaagaaacttctacagagcaaccactcaccaATGGAGTCTCCCTCTGTTGCCCAGGCTGGAGTGCAGTGGCAGGATCTTGGCTCACCACAACCTCCGCCTCCCTTGTTCAAGTGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGACTACAGGCGCACACCACCATGCCCAGCTAATCTTTGTATTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCAGGCCGGTCTCGAACTCCTGACCTCATGA MKPVKHLLTTSNKSANVPALTTKKGLHNLPLSPELKEKHNAKLIHDKIEPMVLRSPPTGESILRYALPIPSSKTKNLLPEDEMIGKIIKHLKMVVSTLEETYGHCDQNGEEPFVKHEHEELSLSVGDDMNSFLTYCSQFAAQLEEALKEEQNILESLFKWFQWQVNQMEEISKDQTLLQAEPPKPDKTVILNIAEIVRLVQRFEELKNRLKQRSKSSVKVMLSKTMDKENRPEAVKSCEALAQKIEEFLEAHSTDEFKDVSATEPQTAHSMTNRFNAMLKVFENQANMLERAVNDQVLLDAEYKQMQCDFQLLSEEKLVLENELQKLKDKEKTKPTNNRTKKAVKTVKKKDKGKSEDSEKKMSPEKEFKIKEDLDQVQKVARLEIENKVLQEQLKQALQEAEKAKHQLNYFLNQEKLLKSEGKTETTMQVGNSQTKVKGEDSKNIPLEKETRKSLVSDSGGQRTSDKIQEYPQITAQSGRLIEKSSEKKRSSPAISDLSQILKSQDESAFLESSNEVSVAENQSYKSPSETHDKSLTTVSSSKEVQDSLSVGTLAQKNETVISPFILPPVLTESKKADVSEEQLQKMTEEQTYQAAEKSQADSEVPDENLMVENKDSVTKVQIEQMKQRTSSMERHEETLTTPQLPEDMVLVSRIQSETKNLKATRNESFHSHNDVPEENLMLEQDTKSKTEVEVKKQKSFQDNQLSTHNEVPNERLVVEHQESLSKTKLQIKKQETSTEQPLTNGVSLCCPGWSAVAGSWLTTTSASLVQVILLPQPLE*LGLQAHTTMPS*SLYF**RWGFTMLARPVSNS*PH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29152 ENSG00000248515::KANSL1 ENSG00000248515.2::ENSG00000120071.15 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 487 FALSE NA FALSE NA ENSG00000248515 ENSG00000248515.2 lncRNA + + chr4:19455418-19938448:+ chr4:19455652:+ chr4:19457041-19940071:+ chr4:19457275:+ KANSL1 ENSG00000120071.15 protein_coding - - chr17:46029916-46225389:- chr17:46094701:- chr17:44107282-44302755:- chr17:44172067:- chr4:19524272,chr4:19524273 chr17:46138120,chr17:46138120 NA NA chr4:19525895,chr4:19525896 chr17:44215486,chr17:44215486 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 4 4 4 ONLY_REF_SPLICE YES_LDAS 0.1078 GT 1.5656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29155 ZNF652::ENSG00000267364 ENSG00000198740.9::ENSG00000267364.4 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49316826:- chr17:47366568-47439835:- chr17:47394188:- ENSG00000267364 ENSG00000267364.4 lncRNA + + chr17:35313442-35325449:+ chr17:35321735:+ chr17:33640461-33652468:+ chr17:33648754:+ chr17:49312660,chr17:49312749,chr17:49312753 chr17:35317581,chr17:35317478,chr17:35317474 NA NA chr17:47390022,chr17:47390111,chr17:47390115 chr17:33644600,chr17:33644497,chr17:33644493 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 3 8 3 5.01 ONLY_REF_SPLICE YES_LDAS 0.1079 GT 1.6049 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29156 ZNF562::PIP5K1C ENSG00000171466.10::ENSG00000186111.11 RMGI SRR8615439 SRR8670764 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 486 FALSE NA FALSE NA ZNF562 ENSG00000171466.10 protein_coding - - chr19:9641807-9675100:- chr19:9656547:- chr19:9752483-9785776:- chr19:9767223:- PIP5K1C ENSG00000186111.11 protein_coding - - chr19:3630183-3700468:- chr19:3647386:- chr19:3630181-3700466:- chr19:3647384:- chr19:9655119 chr19:3650025 NA NA chr19:9765795 chr19:3650023 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KRAB|40-81|2.5e-26^HVO_2753_ZBP|85-99|4.6^TFIIS_C|114-120|0.81^C1_1|118-145|0.065^TBPIP_C|119-146|0.88^DZR|121-141|0.0051^HalOD2|124-134|0.25^HVO_2753_ZBP|125-133|0.13^YhfH|125-137|0.0033^zf-C2H2_4|126-146|4.3e-05^XPA_N|126-140|0.59^zf_UBZ|126-136|0.19^zf-trcl|126-134|2.7^zf-C2H2|127-145|2.8e-05^zf-H2C2_2|127-135|0.7^zf-C2H2_6|127-145|0.47^zf-C2H2_jaz|127-145|5.6^zf-C2H2_11|127-145|0.012^Zn-ribbon_8|127-136|0.17^zf-C2HE|127-144|6.3^Trm112p|127-134|2.2^Rubredoxin_2|127-135|0.19^TFIIS_C|127-134|0.81^zf-H2C2_2|180-186|8^zf-C2H2|181-195|0.1^zf-C2H2_4|181-196|1.3^zf-C2H2_6|181-185|5^zf-H2C2_2|196-215|1.1e-05^C1_1|201-213|0.055^zf-C2H2_8|201-225|0.59^zf-C2HE|201-227|0.00078^HVO_2753_ZBP|202-210|0.09^Zn_ribbon_SprT|202-215|0.12^TBPIP_C|202-258|0.0042^HalOD2|203-210|0.71^zf-trcl|203-217|0.012^zf-C2H2|204-226|2e-07^zf-C2H2_4|204-226|2.2e-05^zf-C2H2_6|204-223|8.9e-06^zf-C2H2_jaz|204-223|0.0056^zf-C2H2_11|204-225|0.023^Zn-ribbon_8|204-218|0.002^zf_UBZ|204-214|0.023^zf_C2H2_ZHX|204-222|0.32^zf-met|204-223|0.43^Rubredoxin_2|204-210|0.051^TFIIS_C|204-214|0.02^XPA_N|205-213|0.02^YhfH|205-212|0.091^Poxv_Bcl-2-like|207-239|0.03^DUF6434|207-217|4^zf-H2C2_2|218-233|0.015^YhfH|228-237|9^zf-C2H2|232-248|0.24^zf-H2C2_2|252-270|0.2^Poxv_Bcl-2-like|258-314|0.02^TBPIP_C|261-283|1.2^Zn-ribbon_8|263-278|0.38^C1_1|263-296|0.099^zf-C2H2_8|263-309|6e-05^zf-trcl|263-270|8.9^zf-C2H2|264-282|6.4e-06^zf-C2H2_4|264-282|8.8e-05^zf-C2H2_jaz|264-283|1.7^zf-C2H2_11|264-276|2.2^XPA_N|264-270|5.9^zf-C2HE|264-282|0.055^zf_C2H2_ZHX|264-288|0.0026^zf-C2H2_6|265-284|0.016^zf-met|265-283|0.095^zf-H2C2_2|275-298|1.7e-08^Trm112p|278-298|0.0042^HalOD2|283-297|0.88^DUF6434|283-305|0.56^zf-C2HE|285-310|0.1^zf-C2H2_11|286-309|0.0024^HVO_2753_ZBP|286-294|0.22^IGPD|286-327|0.0018^zf-trcl|286-297|0.058^zf_UBZ|287-298|0.042^zf_C2H2_ZHX|287-306|0.66^zf-C2H2|288-310|1.7e-09^zf-C2H2_4|288-310|3.1e-06^zf-C2H2_6|288-298|0.00053^zf-C2H2_jaz|288-307|2e-05^Zn-ribbon_8|288-327|0.00029^TBPIP_C|288-310|2.9^zf-met|288-308|0.00034^Rubredoxin_2|288-296|0.058^TFIIS_C|288-298|0.076^XPA_N|289-300|0.057^YhfH|289-297|0.18^HVO_2753_ZBP-PARTIAL|302-348~|7.8e-05^zf-H2C2_2|304-327|3.3e-10^C1_1-PARTIAL|307-348~|0.00062^zf-trcl|314-326|0.13^YhfH|315-325|0.0083^HalOD2|315-327|0.018^zf-C2HE|315-338|0.032^zf-C2H2|316-338|4.4e-09^zf-C2H2_4|316-338|3.7e-06^zf-C2H2_6|316-338|5.4e-05^zf-C2H2_jaz|316-337|0.00095^zf-C2H2_11|316-336|0.0053^zf_UBZ|316-328|0.084^Zn_ribbon_SprT|316-326|0.19^Zn_ribbon_SprT-PARTIAL|316-348~|0.00096^TBPIP_C|316-339|0.085^Rubredoxin_2|316-322|0.41^TFIIS_C|316-326|0.045^XPA_N|317-328|0.0013^zf_C2H2_ZHX|318-340|0.1^Trm112p|318-325|9.5^zf-met|318-338|0.024^zf-C2H2_8-PARTIAL|319-348~|0.031^DUF6434-PARTIAL|324-348~|0.016^zf-H2C2_2-PARTIAL|330-348~|1.2e-11^C1_1-PARTIAL|339-348~|0.0049^HalOD2-PARTIAL|342-348~|0.0019^zf-C2HE-PARTIAL|342-348~|0.15^zf-trcl-PARTIAL|342-348~|0.028^zf-C2H2-PARTIAL|344-348~|7.7e-08^zf-C2H2_4-PARTIAL|344-348~|1.5e-05^zf-C2H2_6-PARTIAL|344-348~|5.7e-05^zf-C2H2_jaz-PARTIAL|344-348~|2.8^Zn-ribbon_8-PARTIAL|344-348~|0.00076^zf_UBZ-PARTIAL|344-348~|0.054^zf_C2H2_ZHX-PARTIAL|344-348~|0.0018^TBPIP_C-PARTIAL|344-348~|0.44^zf-met-PARTIAL|344-348~|6.6^Rubredoxin_2-PARTIAL|344-348~|0.0037^TFIIS_C-PARTIAL|344-348~|0.031^zf-C2H2_11-PARTIAL|345-348~|0.1^XPA_N-PARTIAL|345-348~|0.017^YhfH-PARTIAL|345-348~|0.036^IGPD-PARTIAL|345-348~|0.072^Trm112p-PARTIAL|346-348~|0.66 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:5.94Mb] 1 8 1 7.33 ONLY_REF_SPLICE NO_LDAS 0.1123 GT 1.8892 AG 1.8892 ENST00000453372.7 1-348 ENST00000589578.5 1212-2124 chr19|-|[2]9656547-9656653[1]|[0]9658009-9658135[0]|[2]9659379-9659467[1]|[0]9660720-9660744[0]<==>chr19|-|[2]3637410-3637613[0]|[2]3638884-3639016[2]|[1]3641705-3641809[2]|[1]3642907-3642939[2]|[1]3643243-3643381[1]|[0]3644087-3644251[1]|[0]3645974-3646058[0]|[2]3647338-3647386[2] atgtcagcctttgatatgtcccatgggttttttcccagggaaccaatctgtccttttgaagaaaagacaaagataggaacgatggtagaggaccaccggtcaaattcttaccaggattcagtgacgtttgatgatgtggctgtggagttcaccccagaggagtgggctttactggacacaactcagaaatacctctacagagatgtgatgctggagaactacatgaacctggcctctgtggatttctttttctgcttaacttcagaatgggaaatacaacctagaaccaaacggtcatcacttcagcagggttttttgaagaatcaaatattcactgggatacaaatgGTTCATCAAGAAACTGGAGCACACCTGGAAGGCCCTCGTCCACGATGGGGACACGGTGTCCGTCCACCGCCCCAGCTTCTATGCCGAGCGCTTTTTCAAGTTCATGAGCAACACGGTCTTTCGGAAGAACTCCTCCCTGAAGTCCTCGCCCTCCAAGAAGGGGCGCGGCGGAGCCTTGCTAGCTGTGAAACCGCTGGGGCCCACCGCTGCCTTCTCGGCCAGCCAGATCCCTAGCGAGCGGGAGGAGGCCCAGTACGACCTGCGGGGGGCCCGCAGCTACCCCACGCTGGAGGACGAAGGCCGGCCCGACCTCCTGCCCTGCACGCCACCTTCTTTCGAAGAAGCCACTACAGCCTCCATTGCCACGACTCTGTCATCCACATCCCTCTCCATTCCTGAGCGGTCCCCCTCGGAGACGTCGGAGCAGCCGCGGTACAGGCGGCGCACACAGTCGTCTGGACAGGATGGCAGGCCGCAGGAGGAGCCACCCGCGGAAGAGGATCTGCAGCAGATTACAGTGCAGGTGGAGCCTGCGTGCAGCGTGGAGATTGTGGTCCCCAAAGAGGAGGACGCAGGGGTGGAGGCTTCCCCGGCCGGTGCCTCTGCTGCTGTTGAAGTAGAAACTGCCAGCCAGGCCTCAGACGAGGAGGGCGCACCTGCCAGCCAGGCCTCGGACGAGGAGGACGCGCCCGCCACCGACATCTACTTTTTCACGGATGGGAGGTACTGGATTTACTCTCCCCGCCATCGCCGACTGCGGGCCGTGACGCTGAGCGCCTCGGGGACTGTAAGTGACCGCAGCCGGCCACCCTGGGGAGAAGGGGCAGTGCCCCTCGGGCAGCAGGGAGCCGCAGGTCCCCGGCCGGAAGCTCAGTGTCTGACGTCAGTTGTTTTCCAGAAGGGCTTTGGGTAA MSAFDMSHGFFPREPICPFEEKTKIGTMVEDHRSNSYQDSVTFDDVAVEFTPEEWALLDTTQKYLYRDVMLENYMNLASVDFFFCLTSEWEIQPRTKRSSLQQGFLKNQIFTGIQMVHQETGAHLEGPRPRWGHGVRPPPQLLCRALFQVHEQHGLSEELLPEVLALQEGARRSLASCETAGAHRCLLGQPDP*RAGGGPVRPAGGPQLPHAGGRRPARPPALHATFFRRSHYSLHCHDSVIHIPLHS*AVPLGDVGAAAVQAAHTVVWTGWQAAGGATRGRGSAADYSAGGACVQRGDCGPQRGGRRGGGFPGRCLCCC*SRNCQPGLRRGGRTCQPGLGRGGRARHRHLLFHGWEVLDLLSPPSPTAGRDAERLGDCK*PQPATLGRRGSAPRAAGSRRSPAGSSVSDVSCFPEGLWV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29157 SLC25A44::DAP3 ENSG00000160785.14::ENSG00000132676.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156194247:+ chr1:156163723-156182587:+ chr1:156164038:+ DAP3 ENSG00000132676.16 protein_coding + + chr1:155687960-155739010:+ chr1:155709773:+ chr1:155657751-155708801:+ chr1:155679564:+ chr1:156198664,chr1:156198664,chr1:156198661 chr1:155698038,chr1:155698039,chr1:155698032 NA NA chr1:156168455,chr1:156168455,chr1:156168452 chr1:155667829,chr1:155667830,chr1:155667823 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023"];INTRACHROMOSOMAL[chr1:0.45Mb] 210 132 210 132 ONLY_REF_SPLICE YES_LDAS 4.3146 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29158 MBP::LINC01899 ENSG00000197971.16::ENSG00000265352.1 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MBP ENSG00000197971.16 protein_coding - - chr18:76978827-77133683:- chr18:77066298:- chr18:74690783-74845639:- chr18:74778254:- LINC01899 ENSG00000265352.1 lncRNA - - chr18:71732615-71788128:- chr18:71732847:- chr18:69399851-69455364:- chr18:69400083:- chr18:77049428,chr18:77049430 chr18:71733003,chr18:71733002 NA NA chr18:74761384,chr18:74761386 chr18:69400239,chr18:69400238 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 146 128 146 128 ONLY_REF_SPLICE YES_LDAS 3.4567 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29159 FCHSD2::FAM168A ENSG00000137478.15::ENSG00000054965.11 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72887470:- chr11:72547790-72853363:- chr11:72598515:- FAM168A ENSG00000054965.11 protein_coding - - chr11:73400487-73598189:- chr11:73468492:- chr11:73111532-73309234:- chr11:73179537:- chr11:72880579,chr11:72880587 chr11:73503040,chr11:73503045 NA NA chr11:72591624,chr11:72591632 chr11:73214085,chr11:73214090 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.26Mb] 57 27 57 27 ONLY_REF_SPLICE YES_LDAS 1.0597 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma UTERUS,BREAST,UTERUS,CERVIX no_match 72551922,72578910|72598515,72851076|72851076,72794740 FALSE,FALSE|TRUE,FALSE|FALSE,FALSE 73179537,73179537|73179537,73131044|73122581,73131044 TRUE,TRUE|TRUE,FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES CDS-5UTR,CDS-5UTR,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29160 CCDC6::ANK3 ENSG00000108091.11::ENSG00000151150.22 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 489 FALSE NA FALSE NA CCDC6 ENSG00000108091.11 protein_coding - - chr10:59788747-59906556:- chr10:59906122:- chr10:61548505-61666314:- chr10:61665880:- ANK3 ENSG00000151150.22 protein_coding - - chr10:60026298-60733490:- chr10:60139087:- chr10:61786056-62493248:- chr10:61898845:- chr10:59877830,chr10:59877838 chr10:60141785,chr10:60141790 NA NA chr10:61637588,chr10:61637596 chr10:61901543,chr10:61901548 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2046-PARTIAL|49-303~|6.6e-156^DUF1192|52-69|0.0025^DUF1192|143-167|0.11^DUF1192|256-280|0.00072^DUF1192-PARTIAL|300-303~|0.34 DUF3008|2810-2835|0.017^Death|4093-4171|2e-21 ["CCDC6:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.12Mb] 44 35 44 35 ONLY_REF_SPLICE YES_LDAS 0.9966 GT 1.8892 AG 1.7819 ENST00000263102.7 1-303 ENST00000280772.7 2615-13134 chr10|-|[2]59906122-59906424[0]<==>chr10|-|[2]60042691-60042759[0]|[2]60055658-60056036[2]|[1]60059340-60059430[1]|[0]60063111-60063254[1]|[0]60064157-60064288[1]|[0]60067935-60068009[1]|[0]60068637-60076448[1]|[0]60080537-60080618[0]|[2]60082150-60082176[0]|[2]60082615-60082737[0]|[2]60083492-60083617[0]|[2]60084602-60084830[2]|[1]60085157-60085253[1]|[0]60086677-60086884[0]|[2]60088147-60088358[1]|[0]60105905-60106059[2]|[1]60108830-60109054[2]|[1]60114225-60114331[0]|[2]60134271-60134373[2]|[1]60138964-60139087[1] atggcggacagcgccagcgagagcgacacggacggggcggggggcaacagcagcagctcggccgccatgcagtcgtcctgctcgtcgacctcgggcggcggcggtggcggcgggggaggcggcggcggtgggaagtcggggggcattgtcatctcgccgttccgcctggaggagctcaccaaccgcctggcctcgctgcagcaagagaacaaggtgctgaagatagagctggagacctacaaactgaagtgcaaggcactgcaggaggagaaccgcgacctgcgcaaagccagcgtgaccatcGTGAAGATGCAATGACCGGGGACACAGACAAATATCTTGGGCCACAGGACCTTAAGGAATTGGGTGATGATTCCCTGCCTGCAGAGGGTTACATGGGCTTTAGTCTCGGAGCGCGTTCTGCCAGCCTCCGCTCCTTCAGTTCGGATAGGTCTTACACCTTGAACAGAAGCTCCTATGCACGGGACAGCATGATGATTGAAGAACTCCTTGTGCCATCCAAAGAGCAGCATCTAACATTCACAAGGGAATTTGATTCAGATTCTCTTAGACATTACAGCTGGGCTGCAGACACCTTAGACAATGTCAATCTTGTTTCAAGCCCCATTCATTCTGGGTTTCTGGTTAGCTTTATGGTGGACGCGAGAGGGGGCTCCATGAGAGGAAGCCGTCATCACGGGATGAGAATCATCATTCCTCCACGCAAGTGTACGGCCCCCACTCGAATCACCTGCCGTTTGGTAAAGAGACATAAACTGGCCAACCCACCCCCCATGGTGGAAGGAGAGGGATTAGCCAGTAGGCTGGTAGAAATGGGTCCTGCAGGGGCACAATTTTTAGGCCCTGTCATAGTGGAAATCCCTCACTTTGGGTCCATGAGAGGAAAAGAGAGAGAACTCATTGTTCTTCGAAGTGAAAATGGTGAAACTTGGAAGGAGCATCAGTTTGACAGCAAAAATGAAGATTTAACCGAGTTACTTAATGGCATGGATGAAGAACTTGATAGCCCAGAAGAGTTAGGGAAAAAGCGTATCTGCAGGATTATCACGAAAGATTTCCCCCAGTATTTTGCAGTGGTTTCCCGGATTAAGCAGGAAAGCAACCAGATTGGTCCTGAAGGTGGAATTCTGAGCAGCACCACAGTGCCCCTTGTTCAAGCATCTTTCCCAGAGGGTGCCCTAACTAAAAGAATTCGAGTGGGCCTCCAGGCCCAGCCTGTTCCAGATGAAATTGTGAAAAAGATCCTTGGAAACAAAGCAACTTTTAGCCCAATTGTCACTGTGGAACCAAGAAGACGGAAATTCCATAAACCAATCACAATGACCATTCCGGTGCCCCCGCCCTCAGGAGAAGGTGTATCCAATGGATACAAAGGGGACACTACACCCAATCTGCGTCTTCTCTGTAGCATTACAGGGGGCACTTCGCCTGCTCAGTGGGAAGACATCACAGGAACAACTCCTTTGACGTTTATAAAAGATTGTGTCTCCTTTACAACCAATGTTTCAGCCAGATTTTGGCTTGCAGACTGCCATCAAGTTTTAGAAACTGTGGGGTTAGCCACGCAACTGTACAGAGAATTGATATGTGTTCCATATATGGCCAAGTTTGTTGTTTTTGCCAAAATGAATGATCCCGTAGAATCTTCCTTGCGATGTTTCTGCATGACAGATGACAAAGTGGACAAAACTTTAGAGCAACAAGAGAATTTTGAGGAAGTCGCAAGAAGCAAAGATATTGAGGTTCTGGAAGGAAAACCTATTTATGTTGATTGTTATGGAAATTTGGCCCCACTTACCAAAGGAGGACAGCAACTTGTTTTTAACTTTTATTCTTTCAAAGAAAATAGACTGCCATTTTCCATCAAGATTAGAGACACCAGCCAAGAGCCCTGTGGTCGTCTGTCTTTTCTGAAAGAACCAAAGACAACAAAAGGACTGCCTCAAACAGCGGTTTGCAACTTAAATATCACTCTGCCAGCACATAAAAAGGAGACAGAGTCAGATCAAGATGATGAGATTGAGAAAACAGATAGACGACAGAGCTTCGCATCCTTAGCTTTACGTAAGCGCTACAGCTACTTGACTGAGCCTGGAATGATTGAACGGAGTACAGGAGCAACAAGATCCCTCCCCACCACTTACTCATACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACAACAGCTCCGATTACAGTGCCTGGGCCAGCCAAGTCAGGCTTCACTTCCTTATCAAGTTCTTCCTCTAATACGCCATCAGCTTCTCCGTTAAAATCAATATGGTCTGTTTCGACACCTTCTCCAATCAAATCCACATTAGGCGCGTCAACTACATCTTCAGTTAAATCCATTAGTGACGTGGCATCTCCAATTAGATCCTTTCGGACAATGTCTTCGCCGATAAAAACTGTGGTGTCACAATCTCCATACAATATCCAAGTTTCCTCTGGTACCCTGGCTAGAGCTCCAGCAGTCACGGAAGCTACGCCCTTAAAAGGGCTGGCATCCAATTCTACGTTTTCCTCTCGAACCTCTCCAGTGACTACAGCAGGGTCTCTTTTGGAGAGGTCATCAATTACTATGACACCCCCTGCCTCCCCCAAATCAAACATTAATATGTATTCCTCAAGTTTGCCATTTAAGTCAATTATTACATCAGCAGCACCGCTAATATCTTCACCTTTAAAGTCAGTGGTGTCTCCAGTTAAATCAGCAGTTGATGTCATTTCATCAGCCAAAATTACAATGGCATCTTCTCTCTCATCACCTGTGAAGCAGATGCCTGGACATGCAGAGGTAGCATTAGTCAATGGATCTATTTCCCCTCTAAAATATCCATCATCCTCAACTTTAATTAATGGATGCAAAGCCACTGCCACGTTACAGGAAAAAATTTCTTCTGCTACAAACTCTGTGAGCTCTGTGGTCAGTGCAGCCACTGACACAGTTGAGAAAGTGTTTTCTACCACGACTGCAATGCCATTTTCCCCACTCAGGTCATATGTTTCTGCAGCACCATCAGCTTTTCAGTCTCTAAGAACTCCTTCCGCAAGTGCACTCTATACATCCCTTGGGTCGTCAATATCTGCAACTACCTCATCTGTAACTTCATCAATTATAACAGTGCCAGTATACTCTGTAGTCAATGTTTTGCCAGAACCAGCATTAAAGAAACTTCCAGACTCTAATTCATTTACAAAATCAGCAGCAGCCTTGCTGTCACCCATTAAAACATTGACTACGGAGACACATCCTCAGCCTCACTTCAGTCGAACTTCATCTCCAGTTAAGTCATCTTTGTTCCTTGCACCCTCTGCCCTTAAGTTGTCTACACCATCTTCTTTATCTTCCAGTCAGGAGATACTAAAAGATGTAGCTGAAATGAAAGAGGACCTAATGCGGATGACCGCAATACTACAGACAGATGTGCCTGAGGAGAAGCCATTCCAACCTGAACTCCCAAAGGAAGGGAGAATAGATGATGAAGAACCTTTCAAAATTGTAGAGAAAGTAAAGGAAGACTTAGTGAAAGTTAGTGAAATCCTTAAAAAGGATGTATGTGTAGATAATAAAGGATCACCCAAATCACCAAAGAGTGACAAAGGACACTCTCCTGAAGATGACTGGATAGAATTTAGTTCGGAAGAAATCCGGGAAGCCAGACAACAAGCTGCTGCGAGCCAGTCTCCATCTCTGCCAGAGAGAGTGCAAGTAAAAGCAAAAGCCGCCTCCGAAAAGGATTATAACTTGACCAAAGTTATTGATTACCTAACAAATGATATTGGGAGTAGTTCACTGACAAACTTAAAATACAAGTTTGAGGATGCAAAGAAGGATGGTGAGGAGAGACAGAAAAGAGTTTTAAAACCAGCAATTGCTTTGCAGGAACACAAACTCAAAATGCCTCCAGCCTCCATGAGGACTTCCACCTCTGAGAAAGAATTGTGTAAAATGGCTGATTCCTTTTTTGGAACAGATACTATTTTAGAGTCTCCTGATGACTTTTCTCAACACGACCAAGATAAAAGTCCCTTGTCTGACAGTGGCTTTGAAACAAGAAGTGAAAAGACACCTTCAGCCCCACAAAGCGCTGAAAGCACTGGTCCTAAACCACTTTTTCATGAAGTTCCCATCCCTCCTGTCATTACAGAAACAAGAACTGAAGTGGTTCATGTTATCAGGAGCTATGATCCCTCAGCTGGGGATGTTCCCCAGACCCAACCAGAGGAGCCTGTGTCACCTAAACCTTCACCTACTTTTATGGAATTGGAACCAAAGCCCACCACCTCTAGTATTAAAGAAAAGGTTAAAGCATTTCAAATGAAAGCCAGTAGTGAAGAAGATGACCACAATCGGGTTTTAAGCAAAGGCATGCGTGTTAAAGAAGAGACTCACATAACCACAACCACCAGAATGGTTTATCATTCTCCACCAGGCGGTGAAGGTGCATCTGAAAGAATTGAAGAAACCATGTCAGTCCATGACATCATGAAGGCCTTTCAGTCCGGGCGGGATCCTTCCAAAGAACTGGCAGGTCTGTTTGAACATAAGTCGGCAGTGTCTCCAGATGTTCACAAGTCTGCTGCTGAAACCTCAGCCCAGCATGCAGAGAAGGACAACCAAATGAAACCCAAACTGGAGCGTATAATAGAAGTCCACATCGAAAAAGGTAACCAAGCTGAGCCCACTGAAGTCATTATTAGAGAAACCAAAAAGCATCCAGAAAAAGAAATGTATGTATATCAGAAAGACTTATCCCGGGGAGATATTAACCTAAAAGATTTTCTGCCAGAAAAACACGATGCTTTTCCTTGTTCAGAGGAACAGGGTCAGCAAGAAGAAGAAGAACTTACTGCTGAAGAGTCATTGCCTTCTTATCTGGAGTCTTCCAGAGTAAACACTCCTGTGTCCCAAGAAGAAGATAGCCGCCCTAGTTCTGCTCAACTCATATCTGATGACTCTTATAAAACATTGAAGCTTTTGAGTCAACACTCAATAGAATACCATGACGATGAGTTGTCAGAACTAAGAGGGGAGTCTTACAGGTTTGCTGAGAAAATGCTTCTGTCAGAAAAGCTAGATGTGTCTCATTCTGATACTGAGGAATCGGTTACAGACCATGCAGGACCCCCTAGCTCAGAGTTACAGGGGTCTGATAAGCGGTCCAGAGAAAAAATAGCCACTGCCCCCAAAAAAGAAATTCTCTCCAAAATCTATAAAGATGTTTCTGAAAATGGTGTAGGTAAAGTGTCTAAAGATGAGCATTTTGATAAAGTGACAGTGTTGCACTATTCTGGCAATGTTAGTAGTCCAAAACATGCCATGTGGATGCGCTTTACTGAGGACAGATTAGACAGAGGTAGAGAGAAGTTGATATATGAAGATAGGGTGGACAGGACTGTGAAGGAGGCTGAAGAAAAACTGACTGAAGTGTCACAGTTTTTTCGTGACAAAACTGAAAAGCTAAATGATGAACTGCAGTCCCCAGAGAAAAAGGCACGCCCTAAAAATGGCAAAGAATATTCTTCTCAAAGCCCTACCAGTAGCAGCCCTGAGAAAGTGCTACTGACAGAACTGCTGGCATCCAATGATGAGTGGGTTAAGGCAAGACAGCATGGCCCTGATGGACAAGGCTTCCCCAAGGCCGAGGAGAAGGCACCCAGTCTGCCCAGCAGCCCAGAGAAGATGGTTCTCTCCCAACAGACTGAGGACAGCAAGTCCACAGTGGAAGCCAAAGGAAGTATTTCACAGAGCAAAGCACCAGATGGGCCCCAGTCTGGATTCCAGCTCAAACAATCTAAACTCAGTTCCATTAGATTAAAATTTGAACAAGGCACACACGCAAAAAGTAAGGACATGTCTCAAGAAGACAGAAAGTCAGATGGCCAGTCCAGAATCCCAGTTAAAAAAATACAGGAGAGCAAGCTACCCGTCTACCAAGTTTTTGCTAGAGAAAAACAGCAGAAGGCCATAGACCTCCCAGATGAAAGTGTATCTGTGCAAAAAGATTTTATGGTATTAAAAACCAAAGATGAGCATGCCCAAAGCAACGAAATTGTTGTAAATGATTCTGGCTCTGATAATGTGAAAAAACAGAGAACTGAAATGTCAAGTAAAGCAATGCCTGACTCTTTTTCTGAGCAGCAGGCTAAAGACTTGGCATGTCATATAACCTCAGATTTAGCAACTAGGGGACCATGGGACAAAAAGGTCTTTAGAACATGGGAGAGTTCGGGAGCCACTAACAATAAGTCTCAGAAAGAAAAACTTTCGCATGTACTTGTTCATGATGTAAGAGAGAATCACATTGGTCACCCTGAGAGTAAAAGTGTTGATCAAAAGAATGAATTTATGTCTGTGACTGAGAGAGAACGCAAATTGTTAACAAACGGCTCTCTCTCAGAAATTAAAGAAATGACTGTAAAATCTCCCTCCAAAAAAGTCTTATATAGGGAATATGTTGTGAAAGAAGGGGACCATCCAGGCGGATTGCTTGATCAGCCTTCCAGGAGGAGCGAGAGCTCAGCAGTGTCACACATTCCCGTCAGAGTTGCTGATGAGAGGAGAATGCTGTCTTCTAATATTCCCGATGGTTTTTGTGAACAGTCGGCATTTCCAAAACATGAACTATCACAAAAATTGTCCCAGTCAAGCATGAGTAAAGAGACAGTTGAGACACAGCACTTTAATTCTATAGAAGATGAAAAAGTTACCTATTCAGAAATCAGCAAAGTTTCCAAACACCAGAGTTATGTAGGTTTATGCCCACCTCTCGAGGAAACCGAAACCTCCCCCACCAAATCTCCTGATTCTTTAGAGTTTAGCCCAGGAAAGGAATCTCCCTCTAGTGATGTATTCGACCACAGTCCCATTGATGGATTGGAAAAACTCGCACCACTAGCCCAGACAGAGGGAGGGAAAGAGATAAAAACTTTACCCGTTTATGTCAGTTTTGTACAAGTGGGGAAGCAATATGAAAAGGAGATACAACAAGGAGGTGTAAAAAAAATCATAAGTCAGGAATGTAAGACAGTACAAGAAACCAGGGGGACCTTTTATACAACTAGACAGCAAAAGCAACCTCCTTCTCCCCAAGGTAGTCCAGAAGATGATACTCTAGAGCAAGTATCCTTTCTAGACAGCTCTGGGAAAAGCCCTTTAACCCCAGAAACACCCAGTTCAGAGGAAGTGAGTTATGAATTTACATCTAAGACACCTGACTCGCTCATAGCTTATATACCAGGCAAACCCAGCCCAATTCCCGAGGTTTCTGAGGAGTCAGAGGAGGAGGAACAGGCCAAGTCAACCTCCCTTAAGCAGACTACAGTGGAGGAAACAGCAGTTGAGCGTGAAATGCCTAATGACGTGAGCAAAGACTCTAACCAAAGACCCAAAAATAACAGAGTTGCCTATATTGAATTTCCCCCTCCTCCACCACTGGATGCGGACCAGATTGAGTCAGATAAGAAGCATCATTATCTCCCAGAAAAAGAGGTTGACATGATTGAAGTCAATCTGCAAGATGAGCATGACAAGTACCAGCTGGCTGAACCTGTCATTAGAGTGCAGCCACCTTCACCAGTTCCTCCCGGGGCAGACGTCAGTGATTCAAGCGATGACGAATCTATTTATCAGCCAGTCCCAGTTAAAAAATATACCTTCAAATTAAAGGAAGTGGACGATGAACAAAAAGAAAAACCCAAAGCTTCTGCTGAAAAGGCTTCCAACCAGAAAGAACTGGAAAGTAATGGATCTGGAAAAGATAATGAATTTGGCCTTGGCCTTGATTCACCTCAGAATGAAATTGCCCAGAATGGGAACAACGACCAGTCCATCACAGAGTGTTCCATTGCCACCACAGCAGAGTTTTCTCATGACACGGATGCCACAGAGATCGACTCTCTGGATGGCTATGACCTGCAAGATGAAGATGATGGCTTGACAGAGAGTGATTCTAAACTCCCAATTCAAGCCATGGAAATTAAGAAAGATATCTGGAACACAGAGGGCATTCTGAAGCCAGCTGACCGCTCTTTTAGCCAAAGTAAACTTGAAGTTATCGAGGAGGAGGGAAAGGTGGGACCAGATGAGGACAAGCCACCTTCTAAAAGTTCTTCATCTGAAAAGACTCCTGATAAGACTGATCAGAAGTCAGGGGCCCAGTTCTTCACACTGGAAGGCAGACATCCTGACAGATCAGTGTTTCCTGATACTTACTTCAGTTACAAAGTAGATGAAGAATTTGCCACTCCTTTTAAAACAGTAGCTACCAAAGGTCTAGATTTTGACCCTTGGTCTAATAACCGAGGGGATGATGAAGTTTTTGACAGTAAATCACGGGAAGATGAAACTAAGCCATTTGGGCTGGCGGTAGAAGACCGCTCTCCAGCAACAACCCCTGATACAACGCCAGCCAGAACGCCAACTGATGAAAGTACCCCAACTAGTGAGCCTAACCCCTTCCCATTTCATGAAGGAAAAATGTTTGAGATGACTCGCAGTGGTGCAATTGACATGAGCAAGAGGGATTTTGTTGAAGAGAGGCTCCAATTTTTCCAGATTGGTGAGCATACTTCTGAAGGGAAGTCAGGGGACCAGGGGGAAGGGGATAAAAGTATGGTCACTGCCACACCACAGCCACAGTCAGGGGACACCACTGTAGAAACCAATCTAGAGAGAAATGTAGAGACACCTACAGTGGAACCTAACCCCAGCATCCCGACCAGCGGAGAGTGTCAGGAAGGCACATCCAGTAGTGGCTCCCTGGAGAAATCAGCAGCAGCCACTAACACCTCTAAAGTTGACCCCAAGTTGCGCACGCCTATAAAAATGGGAATTTCTGCATCCACCATGACCATGAAGAAAGAAGGCCCTGGAGAAATAACAGATAAGATAGAAGCGGTGATGACCAGTTGTCAGGGATTAGAAAATGAAACTATAACAATGATTTCAAATACAGCCAATAGCCAGATGGGCGTTAGGCCCCATGAAAAACATGATTTTCAAAAAGATAACTTTAATAACAACAACAATTTGGATTCTTCCACTATACAGACAGATAACATTATGAGTAATATAGTTCTGACAGAACATTCTGCACCCACTTGTACCACAGAGAAAGATAACCCAGTGAAAGTCTCATCAGGAAAAAAGACAGGGGTACTACAAGGACACTGTGTAAGAGATAAGCAGAAAGTTCTTGGAGAACAGCAAAAAACAAAGGAATTGATAGGGATTAGGCAAAAATCCAAACTTCCCATAAAGGCCACTTCACCAAAAGATACCTTCCCACCGAACCATATGTCAAACACTAAAGCAAGTAAAATGAAGCAGGTTAGTCAATCCGAGAAAACCAAAGCCCTTACTACTTCTTCATGTGTAGATGTAAAGTCCAGAATTCCAGTGAAAAACACACACAGGGATAACATAATTGCAGTTAGAAAAGCATGTGCCACACAAAAGCAAGGGCAGCCAGAGAAAGGCAAGGCCAAACAGCTTCCATCCAAGTTGCCAGTAAAGGTAAGATCCACCTGTGTCACTACCACCACCACCACTGCCACCACCACCACCACTACCACCACTACCACCACCACCAGCTGCACAGTTAAAGTTAGGAAAAGTCAGCTCAAGGAAGTATGTAAACATTCCATTGAATATTTTAAGGGAATTAGTGGTGAGACCTTAAAGCTTGTGGACCGCCTCTCTGAAGAAGAAAAAAAGATGCAGTCCGAGTTGTCCGATGAGGAAGAAAGTACCTCAAGAAACACGTCGTTGTCCGAGACTTCCCGGGGTGGCCAGCCTTCGGTTACAACGAAGTCTGCTAGAGATAAGAAAACAGAGGCAGCACCTTTAAAATCAAAGAGTGAAAAGGCCGGCAGTGAGAAAAGGAGCAGTAGAAGGACTGGTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTTAGTTGGACAGAACTGGCAAGGGAACTGAATTTTTCAGTGGATGAAATCAATCAAATACGTGTGGAAAATCCAAATTCTTTAATTTCTCAGAGCTTCATGTTATTAAAAAAATGGGTTACCAGAGACGGAAAAAATGCCACAACTGATGCCTTAACTTCGGTCTTGACAAAAATTAATCGAATAGATATAGTGACACTGCTAGAAGGACCAATATTTGATTATGGAAATATTTCAGGCACCAGAAGTTTTGCAGATGAGAACAATGTTTTCCATGACCCTGTTGATGGTTGGCAGAATGAGACATCAAGTGGAAACCTAGAGTCCTGCGCTCAAGCTCGAAGAGTAACTGGTGGGTTACTAGATCGACTGGATGACAGCCCTGACCAGTGTAGAGATTCCATTACCTCATATCTCAAAGGAGAAGCTGGCAAATTTGAAGCAAATGGAAGCCATACAGAAATCACTCCAGAAGCAAAGACAAAATCTTACTTTCCAGAATCCCAAAATGATGTAGGAAAACAGAGTACCAAGGAAACTCTGAAACCAAAAATACATGGATCTGGTCATGTTGAAGAACCAGCATCACCACTAGCAGCATATCAGAAATCTCTAGAAGAAACCAGCAAGCTTATAATAGAAGAGACTAAACCCTGTGTGCCTGTCAGTATGAAAAAGATGAGTAGGACTTCTCCAGCAGATGGCAAGCCAAGGCTTAGCCTCCATGAAGAAGAGGGGTCCAGTGGGTCTGAGCAAAAGCAGGGAGAAGGTTTTAAGGTGAAAACGAAGAAAGAAATCCGGCATGTGGAAAAGAAGAGCCACTCGTAA MADSASESDTDGAGGNSSSSAAMQSSCSSTSGGGGGGGGGGGGGKSGGIVISPFRLEELTNRLASLQQENKVLKIELETYKLKCKALQEENRDLRKASVTIVKMQ*PGTQTNILGHRTLRNWVMIPCLQRVTWALVSERVLPASAPSVRIGLTP*TEAPMHGTA**LKNSLCHPKSSI*HSQGNLIQILLDITAGLQTP*TMSILFQAPFILGFWLALWWTREGAP*EEAVITG*ESSFLHASVRPPLESPAVW*RDINWPTHPPWWKERD*PVGW*KWVLQGHNF*ALS*WKSLTLGP*EEKRENSLFFEVKMVKLGRSISLTAKMKI*PSYLMAWMKNLIAQKS*GKSVSAGLSRKISPSILQWFPGLSRKATRLVLKVEF*AAPQCPLFKHLSQRVP*LKEFEWASRPSLFQMKL*KRSLETKQLLAQLSLWNQEDGNSINQSQ*PFRCPRPQEKVYPMDTKGTLHPICVFSVALQGALRLLSGKTSQEQLL*RL*KIVSPLQPMFQPDFGLQTAIKF*KLWG*PRNCTEN*YVFHIWPSLLFLPK*MIP*NLPCDVSA*QMTKWTKL*SNKRILRKSQEAKILRFWKENLFMLIVMEIWPHLPKEDSNLFLTFILSKKIDCHFPSRLETPAKSPVVVCLF*KNQRQQKDCLKQRFAT*ISLCQHIKRRQSQIKMMRLRKQIDDRASHP*LYVSATAT*LSLE*LNGVQEQQDPSPPLTHTSHSFLQDHTSPGQQLRLQCLGQPSQASLPYQVLPLIRHQLLR*NQYGLFRHLLQSNPH*ARQLHLQLNPLVTWHLQLDPFGQCLRR*KLWCHNLHTISKFPLVPWLELQQSRKLRP*KGWHPILRFPLEPLQ*LQQGLFWRGHQLL*HPLPPPNQTLICIPQVCHLSQLLHQQHR*YLHL*SQWCLQLNQQLMSFHQPKLQWHLLSHHL*SRCLDMQR*H*SMDLFPL*NIHHPQL*LMDAKPLPRYRKKFLLLQTL*ALWSVQPLTQLRKCFLPRLQCHFPHSGHMFLQHHQLFSL*ELLPQVHSIHPLGRQYLQLPHL*LHQL*QCQYTL*SMFCQNQH*RNFQTLIHLQNQQQPCCHPLKH*LRRHILSLTSVELHLQLSHLCSLHPLPLSCLHHLLYLPVRRY*KM*LK*KRT*CG*PQYYRQMCLRRSHSNLNSQRKGE*MMKNLSKL*RK*RKT**KLVKSLKRMYV*IIKDHPNHQRVTKDTLLKMTG*NLVRKKSGKPDNKLLRASLHLCQRECK*KQKPPPKRIIT*PKLLIT*QMILGVVH*QT*NTSLRMQRRMVRRDRKEF*NQQLLCRNTNSKCLQPP*GLPPLRKNCVKWLIPFLEQILF*SLLMTFLNTTKIKVPCLTVALKQEVKRHLQPHKALKALVLNHFFMKFPSLLSLQKQELKWFMLSGAMIPQLGMFPRPNQRSLCHLNLHLLLWNWNQSPPPLVLKKRLKHFK*KPVVKKMTTIGF*AKACVLKKRLT*PQPPEWFIILHQAVKVHLKELKKPCQSMTS*RPFSPGGILPKNWQVCLNISRQCLQMFTSLLLKPQPSMQRRTTK*NPNWSV**KSTSKKVTKLSPLKSLLEKPKSIQKKKCMYIRKTYPGEILT*KIFCQKNTMLFLVQRNRVSKKKKNLLLKSHCLLIWSLPE*TLLCPKKKIAALVLLNSYLMTLIKH*SF*VNTQ*NTMTMSCQN*EGSLTGLLRKCFCQKS*MCLILILRNRLQTMQDPLAQSYRGLISGPEKK*PLPPKKKFSPKSIKMFLKMV*VKCLKMSILIK*QCCTILAMLVVQNMPCGCALLRTD*TEVERS*YMKIGWTGL*RRLKKN*LKCHSFFVTKLKS*MMNCSPQRKRHALKMAKNILLKALPVAALRKCY*QNCWHPMMSGLRQDSMALMDKASPRPRRRHPVCPAAQRRWFSPNRLRTASPQWKPKEVFHRAKHQMGPSLDSSSNNLNSVPLD*NLNKAHTQKVRTCLKKTESQMASPESQLKKYRRASYPSTKFLLEKNSRRP*TSQMKVYLCKKILWY*KPKMSMPKATKLL*MILALIM*KNRELKCQVKQCLTLFLSSRLKTWHVI*PQI*QLGDHGTKRSLEHGRVREPLTISLRKKNFRMYLFMM*ERITLVTLRVKVLIKRMNLCL*LRENANC*QTALSQKLKK*L*NLPPKKSYIGNML*KKGTIQADCLISLPGGARAQQCHTFPSELLMRGECCLLIFPMVFVNSRHFQNMNYHKNCPSQA*VKRQLRHSTLIL*KMKKLPIQKSAKFPNTRVM*VYAHLSRKPKPPPPNLLIL*SLAQERNLPLVMYSTTVPLMDWKNSHH*PRQREGKR*KLYPFMSVLYKWGSNMKRRYNKEV*KKS*VRNVRQYKKPGGPFIQLDSKSNLLLPKVVQKMIL*SKYPF*TALGKAL*PQKHPVQRK*VMNLHLRHLTRS*LIYQANPAQFPRFLRSQRRRNRPSQPPLSRLQWRKQQLSVKCLMT*AKTLTKDPKITELPILNFPLLHHWMRTRLSQIRSIIISQKKRLT*LKSICKMSMTSTSWLNLSLECSHLHQFLPGQTSVIQAMTNLFISQSQLKNIPSN*RKWTMNKKKNPKLLLKRLPTRKNWKVMDLEKIMNLALALIHLRMKLPRMGTTTSPSQSVPLPPQQSFLMTRMPQRSTLWMAMTCKMKMMA*QRVILNSQFKPWKLRKISGTQRAF*SQLTALLAKVNLKLSRRRERWDQMRTSHLLKVLHLKRLLIRLIRSQGPSSSHWKADILTDQCFLILTSVTK*MKNLPLLLKQ*LPKV*ILTLGLITEGMMKFLTVNHGKMKLSHLGWR*KTALQQQPLIQRQPERQLMKVPQLVSLTPSHFMKEKCLR*LAVVQLT*ARGILLKRGSNFSRLVSILLKGSQGTRGKGIKVWSLPHHSHSQGTPL*KPI*REM*RHLQWNLTPASRPAESVRKAHPVVAPWRNQQQPLTPLKLTPSCARL*KWEFLHPP*P*RKKALEK*QIR*KR**PVVRD*KMKL*Q*FQIQPIARWALGPMKNMIFKKITLITTTIWILPLYRQITL*VI*F*QNILHPLVPQRKITQ*KSHQEKRQGYYKDTV*EISRKFLENSKKQRN**GLGKNPNFP*RPLHQKIPSHRTICQTLKQVK*SRLVNPRKPKPLLLLHV*M*SPEFQ*KTHTGIT*LQLEKHVPHKSKGSQRKARPNSFHPSCQ*R*DPPVSLPPPPLPPPPPLPPLPPPPAAQLKLGKVSSRKYVNIPLNILRELVVRP*SLWTASLKKKKRCSPSCPMRKKVPQETRRCPRLPGVASLRLQRSLLEIRKQRQHL*NQRVKRPAVRKGAVEGLVHRVHVNGQISGWQ**PITWDLVGQNWQGN*IFQWMKSIKYVWKIQIL*FLRASCY*KNGLPETEKMPQLMP*LRS*QKLIE*I**HC*KDQYLIMEIFQAPEVLQMRTMFSMTLLMVGRMRHQVET*SPALKLEE*LVGY*IDWMTALTSVEIPLPHISKEKLANLKQMEAIQKSLQKQRQNLTFQNPKMM*ENRVPRKL*NQKYMDLVMLKNQHHH*QHIRNL*KKPASL**KRLNPVCLSV*KR*VGLLQQMASQGLASMKKRGPVGLSKSREKVLR*KRRKKSGMWKRRATR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma OVARY,OVARY,OVARY,OVARY,LUNG,UTERUS,UTERUS,BREAST,BREAST exact 61665880,61665880|61665880|61665880|61665880|61665880,61665880|61665880,61665880|61665880|61665880,61665880,61665880,61564178,61564178,61574410 TRUE,TRUE|TRUE|TRUE|TRUE|TRUE,TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE,FALSE,FALSE,FALSE 61789584,61827767|61802514|61874089|61802517|61824046,61802514|61802517,61802517|61815794|61802514,61789584,61842495,61848116,61827767,61789584 FALSE,FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY CDS-3UTR,Out-of-frame,In-frame,In-frame,CDS-3UTR,In-frame,In-frame,In-frame,CDS-3UTR FALSE NA NA NA NA NA NA NA TRUE coiled-coil domain containing 6 1 Yes papillary thyroid, CML, NSCLC epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29161 STARD10::FCHSD2 ENSG00000214530.10::ENSG00000137478.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 491 FALSE NA FALSE NA STARD10 ENSG00000214530.10 protein_coding - - chr11:72754729-72794047:- chr11:72780975:- chr11:72465774-72505092:- chr11:72492020:- FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72902638:- chr11:72547790-72853363:- chr11:72613683:- chr11:72777272,chr11:72777279 chr11:72910627,chr11:72910627 NA NA chr11:72488317,chr11:72488324 chr11:72621672,chr11:72621672 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame START|36-136|1.4e-12 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.04Mb];LOCAL_REARRANGEMENT:-:[42577] 40 18 40 18 ONLY_REF_SPLICE YES_LDAS 0.7317 GT 1.8892 AG 1.8892 ENST00000546314.5 1-207 ENST00000409314.5 829-2295 chr11|-|[2]72780975-72781181[0]<==>chr11|-|[2]72838791-72838874[0]|[2]72840877-72840959[1]|[0]72841454-72841583[0]|[2]72842621-72842841[1]|[0]72843151-72843328[0]|[2]72843449-72843532[0]|[2]72849755-72849889[0]|[2]72867865-72868026[0]|[2]72887470-72887574[0]|[2]72889829-72889945[0]|[2]72900257-72900328[0]|[2]72902543-72902638[0] atggagaagctggcggcctctacagagccccaagggcctcggccggtcctgggccgtgagagtgtccaggtgcccgatgaccaagactttcgcagcttccggtcagagtgtgaggctgaggtgggctggaacctgacctatagcagggctggggtgtctgtctgggtgcaggctgtggagatggatcggacgctgcacaagatcaagGTGGTCCGGGACTACAATCTTCAGCTGTTTTTGCAAGAAAACGCTGTATTTCACAAACCCCAGCCCTTCCAGTTCCAGCCTTGTGACAGTGATACTAGTTTAAAAGCCGCCCAACTGGTGGATATTGAGCTCTCCCCTGTCAGTGCTCTGAGAATGACCATAGCTGAGAGCCGACAGTTAGAATCAGAAACTGGGACCACAGAGGAGCACAGTCTAAATAAGGAAGCTCGAAAATGGGCCACACGTGTGGCACGTGAGCATAAAAACATTGTTCACCAACAACGGGTTCTAAATGATCTGGAGTGTCATGGAGCTGCTGTATCAGAACAAAGCCGAGCAGAGCTAGAACAGAAAATAGATGAAGCTAGAGAAAATATTCGTAAAGCAGAGATAATTAAATTGAAAGCTGAAGCCCGGTTGGACCTGCTAAAGCAGATTGGTGTTTCTGTGGACACATGGCTAAAGAGTGCCATGAACCAAGTAATGGAAGAACTGGAAAATGAGCGATGGGCCCGCCCTCCTGCAGTGACCAGTAATGGCACTTTACACTCGCTTAATGCAGATACCGAAAGAGAAGAAGGCGAAGAGTTTGAAGATAACATGGATGTTTTCGATGACAGCAGTTCCAGCCCTTCTGGCACCTTAAGAAATTATCCACTCACCTGCAAAGTTGTTTATTCCTACAAGGCTTCTCAACCAGATGAGTTGACCATTGAGGAACATGAGGTGTTAGAAGTGATTGAAGATGGAGATATGGAAGACTGGGTAAAGGCTCGAAATAAAGTTGGCCAAGTGGGTTATGTGCCAGAAAAGTACCTACAGTTTCCCACCTCGAACAGCCTCCTGAGCATGCTGCAGTCCCTGGCCGCTTTGGACAGTCGGTCACACACGTCCAGCAATTCCACGGAAGCAGAACTCGTTTCAGGCAGCCTCAACGGAGATGCCAGTGTATGTTTTGTGAAAGCACTTTATGATTATGAGGGCCAGACAGATGATGAGTTATCTTTTCCTGAGGGAGCAATAATCCGTATCTTGAACAAAGAAAACCAAGATGATGATGGCTTCTGGGAAGGGGAATTCAATGGGCGTATTGGAGTTTTCCCATCGGTGCTAGTGGAAGAACTTTCAGCCTCAGAAAATGGTGACACTCCATGGATGAGAGAGATTCAGATCTCTCCTTCCCCCAAGCCACACGCCTCCCTGCCTCCACTGCCGTTGTACGACCAGCCTCCCAGCAGCCCCTACCCCAGCCCAGATAAGAGGAGCTCCCTGTACTTTCCCCGGTCTCCTTCAGCAAACGAAAAAAGCCTTCATGCTGAGTCACCAGGATTCTCACAGGCATCAAGGCATACTCCTGAGACCTCATATGGCAAACTGCGACCTGTCCGGGCAGCTCCCCCTCCACCTACACAGAATCACCGAAGGCCAGCAGAGAAGATTGAAGATGTGGAAATCACACTGGTGTGA MEKLAASTEPQGPRPVLGRESVQVPDDQDFRSFRSECEAEVGWNLTYSRAGVSVWVQAVEMDRTLHKIKVVRDYNLQLFLQENAVFHKPQPFQFQPCDSDTSLKAAQLVDIELSPVSALRMTIAESRQLESETGTTEEHSLNKEARKWATRVAREHKNIVHQQRVLNDLECHGAAVSEQSRAELEQKIDEARENIRKAEIIKLKAEARLDLLKQIGVSVDTWLKSAMNQVMEELENERWARPPAVTSNGTLHSLNADTEREEGEEFEDNMDVFDDSSSSPSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSNSLLSMLQSLAALDSRSHTSSNSTEAELVSGSLNGDASVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSASENGDTPWMREIQISPSPKPHASLPPLPLYDQPPSSPYPSPDKRSSLYFPRSPSANEKSLHAESPGFSQASRHTPETSYGKLRPVRAAPPPPTQNHRRPAEKIEDVEITLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29162 SLC38A1::COL2A1 ENSG00000111371.16::ENSG00000139219.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 493 FALSE NA FALSE NA SLC38A1 ENSG00000111371.16 protein_coding - - chr12:46183063-46270017:- chr12:46229153:- chr12:46576846-46663800:- chr12:46622936:- COL2A1 ENSG00000139219.19 protein_coding - - chr12:47972967-48004554:- chr12:47980062:- chr12:48366750-48398337:- chr12:48373845:- chr12:46222409,chr12:46222419 chr12:47980400,chr12:47980407 NA NA chr12:46616192,chr12:46616202 chr12:48374183,chr12:48374190 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Aa_trans-PARTIAL|70-314~|1.6e-76^Cation_ATPase_C|188-188|2^Cation_ATPase_C-PARTIAL|308-314~|1.1e-08 none ["SLC38A1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.70Mb] 37 15 37 15 ONLY_REF_SPLICE YES_LDAS 0.656 GT 1.4566 AG 1.8892 ENST00000549049.5 1-314 ENST00000337299.7 2419-4257 chr12|-|[1]46229153-46229268[0]|[2]46229564-46229639[2]|[1]46239679-46239800[0]<==>chr12|-|[2]47973407-47973553[0]|[2]47974089-47974331[0]|[2]47974675-47974862[1]|[0]47975317-47975605[0]|[2]47975963-47976070[0]|[2]47976514-47976567[0]|[2]47976812-47976919[0]|[2]47977102-47977155[0]|[2]47977320-47977427[0]|[2]47977600-47977653[0]|[2]47978010-47978117[0]|[2]47978291-47978398[0]|[2]47978597-47978758[0]|[2]47979511-47979564[0]|[2]47980009-47980062[0] atgatgcatttcaaaagtggactcgaattaactgagttgcaaaacatgacagtgcccgaggatgataacattagcaatgactccaatgatttcaccgaagtagaaaatggtcagataaatagcaagtttatttctgatcgtgaaagtagaagaagtctcacaaacagccatttggaaaaaaagaagtgtgatgagtatattccaggtacaacctccttaggcatgtctgtttttaacctaagcaacgccattatgggcagtgggattttgggactcgcctttgccctggcaaacactggaatcctactttttctGGTCCTACTGGAGTGACTGGTCCTAAAGGAGCCCGAGGTGCCCAAGGCCCCCCGGGAGCCACTGGATTCCCTGGAGCTGCTGGCCGCGTTGGACCCCCAGGCTCCAATGGCAACCCTGGACCCCCTGGTCCCCCTGGTCCTTCTGGAAAAGATGGTCCCAAAGGTGCTCGAGGAGACAGCGGCCCCCCTGGCCGAGCTGGTGAACCCGGCCTCCAAGGTCCTGCTGGACCCCCTGGCGAGAAGGGAGAGCCTGGAGATGACGGTCCCTCTGGTGCCGAAGGTCCACCAGGTCCCCAGGGTCTGGCTGGTCAGAGAGGCATCGTCGGTCTGCCTGGGCAACGTGGTGAGAGAGGATTCCCTGGCTTGCCTGGCCCGTCGGGTGAGCCCGGCAAGCAGGGTGCTCCTGGAGCATCTGGAGACAGAGGTCCTCCTGGCCCCGTGGGTCCTCCTGGCCTGACGGGTCCTGCAGGTGAACCTGGACGAGAGGGAAGCCCCGGTGCTGATGGCCCCCCTGGCAGAGATGGCGCTGCTGGAGTCAAGGGTGATCGTGGTGAGACTGGTGCTGTGGGAGCTCCTGGAGCCCCTGGGCCCCCTGGCTCCCCTGGCCCCGCTGGTCCAACTGGCAAGCAAGGAGACAGAGGAGAAGCTGGTGCACAAGGCCCCATGGGACCCTCAGGACCAGCTGGAGCCCGGGGAATCCAGGGTCCTCAAGGCCCCAGAGGTGACAAAGGAGAGGCTGGAGAGCCTGGCGAGAGAGGCCTGAAGGGACACCGTGGCTTCACTGGTCTGCAGGGTCTGCCCGGCCCTCCTGGTCCTTCTGGAGACCAAGGTGCTTCTGGTCCTGCTGGTCCTTCTGGCCCTAGAGGTCCTCCTGGCCCCGTCGGTCCCTCTGGCAAAGATGGTGCTAATGGAATCCCTGGCCCCATTGGGCCTCCTGGTCCCCGTGGACGATCAGGCGAAACCGGCCCTGCTGGTCCTCCTGGAAATCCTGGACCCCCTGGTCCTCCAGGTCCCCCTGGCCCTGGCATCGACATGTCCGCCTTTGCTGGCTTAGGCCCGAGAGAGAAGGGCCCCGACCCCCTGCAGTACATGCGGGCCGACCAGGCAGCCGGTGGCCTGAGACAGCATGACGCCGAGGTGGATGCCACACTCAAGTCCCTCAACAACCAGATTGAGAGCATCCGCAGCCCCGAGGGCTCCCGCAAGAACCCTGCTCGCACCTGCAGAGACCTGAAACTCTGCCACCCTGAGTGGAAGAGTGGAGACTACTGGATTGACCCCAACCAAGGCTGCACCTTGGACGCCATGAAGGTTTTCTGCAACATGGAGACTGGCGAGACTTGCGTCTACCCCAATCCAGCAAACGTTCCCAAGAAGAACTGGTGGAGCAGCAAGAGCAAGGAGAAGAAACACATCTGGTTTGGAGAAACCATCAATGGTGGCTTCCATTTCAGCTATGGAGATGACAATCTGGCTCCCAACACTGCCAACGTCCAGATGACCTTCCTACGCCTGCTGTCCACGGAAGGCTCCCAGAACATCACCTACCACTGCAAGAACAGCATTGCCTATCTGGACGAAGCAGCTGGCAACCTCAAGAAGGCCCTGCTCATCCAGGGCTCCAATGACGTGGAGATCCGGGCAGAGGGCAATAGCAGGTTCACGTACACTGCCCTGAAGGATGGCTGCACGAAACATACCGGTAAGTGGGGCAAGACTGTTATCGAGTACCGGTCACAGAAGACCTCACGCCTCCCCATCATTGACATTGCACCCATGGACATAGGAGGGCCCGAGCAGGAATTCGGTGTGGACATAGGGCCGGTCTGCTTCTTGTAA MMHFKSGLELTELQNMTVPEDDNISNDSNDFTEVENGQINSKFISDRESRRSLTNSHLEKKKCDEYIPGTTSLGMSVFNLSNAIMGSGILGLAFALANTGILLFLVLLE*LVLKEPEVPKAPREPLDSLELLAALDPQAPMATLDPLVPLVLLEKMVPKVLEETAAPLAELVNPASKVLLDPLARRESLEMTVPLVPKVHQVPRVWLVREASSVCLGNVVREDSLACLARRVSPASRVLLEHLETEVLLAPWVLLA*RVLQVNLDEREAPVLMAPLAEMALLESRVIVVRLVLWELLEPLGPLAPLAPLVQLASKETEEKLVHKAPWDPQDQLEPGESRVLKAPEVTKERLESLAREA*RDTVASLVCRVCPALLVLLETKVLLVLLVLLALEVLLAPSVPLAKMVLMESLAPLGLLVPVDDQAKPALLVLLEILDPLVLQVPLALASTCPPLLA*ARERRAPTPCSTCGPTRQPVA*DSMTPRWMPHSSPSTTRLRASAAPRAPARTLLAPAET*NSATLSGRVETTGLTPTKAAPWTP*RFSATWRLARLASTPIQQTFPRRTGGAARARRRNTSGLEKPSMVASISAMEMTIWLPTLPTSR*PSYACCPRKAPRTSPTTARTALPIWTKQLATSRRPCSSRAPMTWRSGQRAIAGSRTLP*RMAARNIPVSGARLLSSTGHRRPHASPSLTLHPWT*EGPSRNSVWT*GRSASC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE collagen, type II, alpha 1 1 chondrosarcoma, enchondroma mesenchymal fusion translocation 29165 ITSN2::OTOF ENSG00000198399.16::ENSG00000115155.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 494 FALSE NA FALSE NA ITSN2 ENSG00000198399.16 protein_coding - - chr2:24202864-24360536:- chr2:24328052:- chr2:24425733-24583405:- chr2:24550921:- OTOF ENSG00000115155.19 protein_coding - - chr2:26457203-26558756:- chr2:26516599:- chr2:26680071-26781624:- chr2:26739467:- chr2:24326509,chr2:24326511 chr2:26516791,chr2:26516790 NA NA chr2:24549378,chr2:24549380 chr2:26739659,chr2:26739658 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EF-hand_4-PARTIAL|19-31~|2.4e-15 C2-PARTIAL|~328-350|1.6e-14^FerI|360-410|7.1e-25^C2|419-522|1.5e-17^FerB|842-917|2.4e-35^C2|961-1051|8.3e-15^C2|1145-1224|0.00074^C2|1279-1311|0.093^Ferlin_C|1296-1367|0.19^Ferlin_C|1369-1388|0.76^C2|1494-1584|1.6e-22^FerB|1819-1833|1.5^C2|1821-1860|5.6e-07^Ferlin_C|1877-1902|5.4e-08^Ferlin_C|1902-1993|1.9e-30 ["OTOF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:2.10Mb] 22 15 22 15 ONLY_REF_SPLICE YES_LDAS 0.4667 GT 1.9656 AG 1.9086 ENST00000361999.7 1-31 ENST00000403946.7 328-5994 chr2|-|[0]24328052-24328082[0]<==>chr2|-|[2]26458040-26458220[2]|[1]26460647-26460747[0]|[2]26460852-26461030[1]|[0]26461696-26461937[2]|[1]26462083-26462181[2]|[1]26463483-26463571[0]|[2]26463964-26464106[1]|[0]26464869-26465029[2]|[1]26465672-26465842[2]|[1]26465949-26466076[0]|[2]26466714-26466851[0]|[2]26467099-26467233[0]|[2]26467365-26467501[1]|[0]26468408-26468474[0]|[2]26470593-26470721[0]|[2]26471121-26471150[0]|[2]26472519-26472649[1]|[0]26473132-26473294[0]|[2]26473406-26473567[0]|[2]26473991-26474110[0]|[2]26474513-26474674[0]|[2]26475359-26475493[0]|[2]26475914-26476038[1]|[0]26476128-26476317[0]|[2]26476891-26477043[0]|[2]26477172-26477288[0]|[2]26477416-26477506[2]|[1]26477649-26477749[0]|[2]26479264-26479384[2]|[1]26479473-26479653[1]|[0]26480203-26480311[0]|[2]26480786-26481009[1]|[0]26482406-26482592[0]|[2]26483462-26483648[2]|[1]26484474-26484633[1]|[0]26489211-26489295[0]|[2]26489678-26489740[0]|[2]26494942-26495073[0]|[2]26501754-26501808[2]|[1]26502300-26502426[1]|[0]26503772-26503845[2]|[1]26516418-26516599[0] atgatggctcagtttcccacagctatgaatgACCAGCCTGTGCGTGGAGGTCCGGTATCAGGCCACTGACGGCACAGTGGGCTCCTGGGACGATGGGGACTTCCTGGGAGATGAGTCTCTTCAAGAGGAAGAGAAGGACAGCCAAGAGACGGATGGACTGCTCCCAGGCTCCCGGCCCAGCTCCCGGCCCCCAGGAGAGAAGAGCTTCCGGAGAGCCGGGAGGAGCGTGTTCTCCGCCATGAAGCTCGGCAAAAACCGGTCTCACAAGGAGGAGCCCCAAAGACCAGATGAACCGGCGGTGCTGGAGATGGAAGACCTTGACCATCTGGCCATTCGGCTAGGAGATGGACTGGATCCCGACTCGGTGTCTCTAGCCTCAGTCACAGCTCTCACCACTAATGTCTCCAACAAGCGATCTAAGCCAGACATTAAGATGGAGCCAAGTGCTGGGCGGCCCATGGATTACCAGGTCAGCATCACGGTGATCGAGGCCCGGCAGCTGGTGGGCTTGAACATGGACCCTGTGGTGTGCGTGGAGGTGGGTGACGACAAGAAGTACACATCCATGAAGGAGTCCACTAACTGCCCCTATTACAACGAGTACTTCGTCTTCGACTTCCATGTCTCTCCGGATGTCATGTTTGACAAGATCATCAAGATTTCGGTGATTCACTCCAAGAACCTGCTGCGCAGTGGCACCCTGGTGGGCTCCTTCAAAATGGACGTGGGAACCGTGTACTCGCAGCCAGAGCACCAGTTCCATCACAAGTGGGCCATCCTGTCTGACCCCGATGACATCTCCTCGGGGCTGAAGGGCTACGTGAAGTGTGACGTTGCCGTGGTGGGCAAAGGGGACAACATCAAGACGCCCCACAAGGCCAATGAGACCGACGAAGATGACATTGAGGGGAACTTGCTGCTCCCCGAGGGGGTGCCCCCCGAACGCCAGTGGGCCCGGTTCTATGTGAAAATTTACCGAGCAGAGGGGCTGCCCCGTATGAACACAAGCCTCATGGCCAATGTAAAGAAGGCTTTCATCGGTGAAAACAAGGACCTCGTGGACCCCTACGTGCAAGTCTTCTTTGCTGGCCAGAAGGGCAAGACTTCAGTGCAGAAGAGCAGCTATGAGCCCCTGTGGAATGAGCAGGTCGTCTTTACAGACCTCTTCCCCCCACTCTGCAAACGCATGAAGGTGCAGATCCGAGACTCGGACAAGGTCAACGACGTGGCCATCGGCACCCACTTCATTGACCTGCGCAAGATTTCTAATGACGGAGACAAAGGCTTCCTGCCCACACTGGGCCCAGCCTGGGTGAACATGTACGGCTCCACACGTAACTACACGCTGCTGGATGAGCATCAGGACCTGAACGAGGGCCTGGGGGAGGGTGTGTCCTTCCGGGCCCGGCTCCTGCTGGGCCTGGCTGTGGAGATCGTAGACACCTCCAACCCTGAGCTCACCAGCTCCACAGAGGTGCAGGTGGAGCAGGCCACGCCCATCTCGGAGAGCTGTGCAGGTAAAATGGAAGAATTCTTTCTCTTTGGAGCCTTCCTGGAGGCCTCAATGATCGACCGGAGAAACGGAGACAAGCCCATCACCTTTGAGGTCACCATAGGCAACTATGGGAACGAAGTTGATGGCCTGTCCCGGCCCCAGCGGCCTCGGCCCCGGAAGGAGCCGGGGGATGAGGAAGAAGTAGACCTGATTCAGAACGCAAGTGATGACGAGGCCGGTGATGCCGGGGACCTGGCCTCAGTCTCCTCCACTCCACCAATGCGGCCCCAGGTCACCGACAGGAACTACTTCCATCTGCCCTACCTGGAGCGAAAGCCCTGCATCTACATCAAGAGCTGGTGGCCGGACCAGCGCCGCCGCCTCTACAATGCCAACATCATGGACCACATTGCCGACAAGCTGGAAGAAGGCCTGAACGACATACAGGAGATGATCAAAACGGAGAAGTCCTACCCTGAGCGTCGCCTGCGGGGCGTCCTGGAGGAGCTGAGCTGTGGCTGCTGCCGCTTCCTCTCCCTCGCTGACAAGGACCAGGGCCACTCATCCCGCACCAGGCTTGACCGGGAGCGCCTCAAGTCCTGCATGAGGGAGCTGGAAAACATGGGGCAGCAGGCCAGGATGCTGCGGGCCCAGGTGAAGCGGCACACGGTGCGGGACAAGCTGAGGCTGTGCCAGAACTTCCTGCAGAAGCTGCGCTTCCTGGCGGACGAGCCCCAGCACAGCATTCCCGACATCTTCATCTGGATGATGAGCAACAACAAGCGTGTCGCCTATGCCCGTGTGCCCTCCAAGGACCTGCTCTTCTCCATCGTGGAGGAGGAGACTGGCAAGGACTGCGCCAAGGTCAAGACGCTCTTCCTTAAGCTGCCAGGGAAGCGGGGCTTCGGCTCGGCAGGCTGGACAGTGCAGGCCAAGGTGGAGCTGTACCTGTGGCTGGGCCTCAGCAAACAGCGCAAGGAGTTCCTGTGCGGCCTGCCCTGTGGCTTCCAGGAGGTCAAGGCAGCCCAGGGCCTGGGCCTGCATGCCTTCCCACCCGTCAGCCTGGTCTACACCAAGAAGCAGGCGTTCCAGCTCCGAGCGCACATGTACCAGGCCCGCAGCCTCTTTGCCGCCGACAGCAGCGGACTCTCAGACCCCTTTGCCCGCGTCTTCTTCATCAATCAGAGTCAGTGCACAGAGGTGCTGAATGAGACCCTGTGTCCCACCTGGGACCAGATGCTGGTGTTCGACAACCTGGAGCTCTATGGTGAAGCTCATGAGCTGAGGGACGATCCGCCCATCATTGTCATTGAAATCTATGACCAGGATTCCATGGGCAAAGCTGACTTCATGGGCCGGACCTTCGCCAAACCCCTGGTGAAGATGGCAGACGAGGCGTACTGCCCACCCCGCTTCCCACCTCAGCTCGAGTACTACCAGATCTACCGTGGCAACGCCACAGCTGGAGACCTGCTGGCGGCCTTCGAGCTGCTGCAGATTGGACCAGCAGGGAAGGCTGACCTGCCCCCCATCAATGGCCCGGTGGACGTGGACCGAGGTCCCATCATGCCCGTGCCCATGGGCATCCGGCCCGTGCTCAGCAAGTACCGAGTGGAGGTGCTGTTCTGGGGCCTACGGGACCTAAAGCGGGTGAACCTGGCCCAGGTGGACCGGCCACGGGTGGACATCGAGTGTGCAGGGAAGGGGGTGCAGTCGTCCCTGATCCACAATTATAAGAAGAACCCCAACTTCAACACCCTCGTCAAGTGGTTTGAAGTGGACCTCCCAGAGAACGAGCTGCTGCACCCGCCCTTGAACATCCGTGTGGTGGACTGCCGGGCCTTCGGTCGCTACACACTGGTGGGCTCCCATGCCGTCAGCTCCCTGCGACGCTTCATCTACCGGCCCCCAGACCGCTCGGCCCCCAGCTGGAACACCACGGTCAGGCTTCTCCGGCGCTGCCGTGTGCTGTGCAATGGGGGCTCCTCCTCTCACTCCACAGGGGAGGTTGTGGTGACTATGGAGCCAGAGGTACCCATCAAGAAACTGGAGACCATGGTGAAGCTGGACGCGACTTCTGAAGCTGTTGTCAAGGTGGATGTGGCTGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGGGCACTGCGGAGGAGCCAGAGGAGGAGGAGCCAGACGAGAGCATGCTGGACTGGTGGTCCAAGTACTTTGCCTCCATTGACACCATGAAGGAGCAACTTCGACAACAAGAGCCCTCTGGAATTGACTTGGAGGAGAAGGAGGAAGTGGACAATACCGAGGGCCTGAAGGGGTCAATGAAGGGCAAGGAGAAGGCAAGGGCTGCCAAAGAGGAGAAGAAGAAGAAAACTCAGAGCTCTGGCTCTGGCCAGGGGTCCGAGGCCCCCGAGAAGAAGAAACCCAAGATTGATGAGCTTAAGGTATACCCCAAAGAGCTGGAGTCCGAGTTTGATAACTTTGAGGACTGGCTGCACACTTTCAACTTGCTTCGGGGCAAGACCGGGGATGATGAGGATGGCTCCACCGAGGAGGAGCGCATTGTGGGACGCTTCAAGGGCTCCCTCTGCGTGTACAAAGTGCCACTCCCAGAGGACGTGTCCCGGGAAGCCGGCTACGACTCCACCTACGGCATGTTCCAGGGCATCCCGAGCAATGACCCCATCAATGTGCTGGTCCGAGTCTATGTGGTCCGGGCCACGGACCTGCACCCTGCTGACATCAACGGCAAAGCTGACCCCTACATCGCCATCCGGCTAGGCAAGACTGACATCCGCGACAAGGAGAACTACATCTCCAAGCAGCTCAACCCTGTCTTTGGGAAGTCCTTTGACATCGAGGCCTCCTTCCCCATGGAATCCATGCTGACGGTGGCTGTGTATGACTGGGACCTGGTGGGCACTGATGACCTCATTGGGGAAACCAAGATCGACCTGGAGAACCGCTTCTACAGCAAGCACCGCGCCACCTGCGGCATCGCCCAGACCTACTCCACACATGGCTACAATATCTGGCGGGACCCCATGAAGCCCAGCCAGATCCTGACCCGCCTCTGCAAAGACGGCAAAGTGGACGGCCCCCACTTTGGGCCCCCTGGGAGAGTGAAGGTGGCCAACCGCGTCTTCACTGGGCCCTCTGAGATTGAGGACGAGAACGGTCAGAGGAAGCCCACAGACGAGCATGTGGCGCTGTTGGCCCTGAGGCACTGGGAGGACATCCCCCGCGCAGGCTGCCGCCTGGTGCCAGAGCATGTGGAGACGAGGCCGCTGCTCAACCCCGACAAGCCGGGCATCGAGCAGGGCCGCCTGGAGCTGTGGGTGGACATGTTCCCCATGGACATGCCAGCCCCTGGGACGCCTCTGGACATCTCACCTCGGAAGCCCAAGAAGTACGAGCTGCGGGTCATCATCTGGAACACAGATGAGGTGGTCTTGGAGGACGACGACTTCTTCACAGGGGAGAAGTCCAGTGACATCTTCGTGAGGGGGTGGCTGAAGGGCCAGCAGGAGGACAAGCAGGACACAGACGTCCACTACCACTCCCTCACTGGCGAGGGCAACTTCAACTGGCGCTACCTGTTCCCCTTCGACTACCTGGCGGCGGAGGAGAAGATCGTCATCTCCAAGAAGGAGTCCATGTTCTCCTGGGACGAGACCGAGTACAAGATCCCCGCGCGGCTCACCCTGCAGATCTGGGATGCGGACCACTTCTCCGCTGACGACTTCCTGGGGGCCATCGAGCTGGACCTGAACCGGTTCCCGCGGGGCGCAAAGACAGCCAAGCAGTGCACCATGGAGATGGCCACCGGGGAGGTGGACGTGCCCCTCGTGTCCATCTTCAAGCAAAAGCGCGTCAAAGGCTGGTGGCCCCTCCTGGCCCGCAATGAGAACGATGAGTTTGAGCTCACGGGCAAGGTGGAGGCTGAGCTGCATTTACTGACAGCAGAGGAGGCAGAGAAGAACCCAGTGGGCCTGGCCCGCAATGAACCTGACCCCCTAGAGAAACCCAACCGGCCCGACACGGCCTTCGTCTGGTTCCTCAACCCTCTCAAGTCCATCAAGTACCTCATCTGCACCCGGTACAAGTGGCTCATCATCAAGATCGTGCTGGCGCTGTTGGGGCTGCTCATGTTGGGGCTCTTCCTCTACAGCCTCCCTGGCTACATGGTCAAAAAGCTCCTTGGGGCATGA MMAQFPTAMNDQPVRGGPVSGH*RHSGLLGRWGLPGR*VSSRGREGQPRDGWTAPRLPAQLPAPRREELPESREERVLRHEARQKPVSQGGAPKTR*TGGAGDGRP*PSGHSARRWTGSRLGVSSLSHSSHH*CLQQAI*ARH*DGAKCWAAHGLPGQHHGDRGPAAGGLEHGPCGVRGGG*RQEVHIHEGVH*LPLLQRVLRLRLPCLSGCHV*QDHQDFGDSLQEPAAQWHPGGLLQNGRGNRVLAARAPVPSQVGHPV*PR*HLLGAEGLREV*RCRGGQRGQHQDAPQGQ*DRRR*H*GELAAPRGGAPRTPVGPVLCENLPSRGAAPYEHKPHGQCKEGFHR*KQGPRGPLRASLLCWPEGQDFSAEEQL*APVE*AGRLYRPLPPTLQTHEGADPRLGQGQRRGHRHPLH*PAQDF**RRQRLPAHTGPSLGEHVRLHT*LHAAG*ASGPERGPGGGCVLPGPAPAGPGCGDRRHLQP*AHQLHRGAGGAGHAHLGELCR*NGRILSLWSLPGGLNDRPEKRRQAHHL*GHHRQLWERS*WPVPAPAASAPEGAGG*GRSRPDSERK**RGR*CRGPGLSLLHSTNAAPGHRQELLPSALPGAKALHLHQELVAGPAPPPLQCQHHGPHCRQAGRRPERHTGDDQNGEVLP*ASPAGRPGGAELWLLPLPLPR*QGPGPLIPHQA*PGAPQVLHEGAGKHGAAGQDAAGPGEAAHGAGQAEAVPELPAEAALPGGRAPAQHSRHLHLDDEQQQACRLCPCALQGPALLHRGGGDWQGLRQGQDALP*AAREAGLRLGRLDSAGQGGAVPVAGPQQTAQGVPVRPALWLPGGQGSPGPGPACLPTRQPGLHQEAGVPAPSAHVPGPQPLCRRQQRTLRPLCPRLLHQSESVHRGAE*DPVSHLGPDAGVRQPGALW*SS*AEGRSAHHCH*NL*PGFHGQS*LHGPDLRQTPGEDGRRGVLPTPLPTSARVLPDLPWQRHSWRPAGGLRAAADWTSREG*PAPHQWPGGRGPRSHHARAHGHPARAQQVPSGGAVLGPTGPKAGEPGPGGPATGGHRVCREGGAVVPDPQL*EEPQLQHPRQVV*SGPPRERAAAPALEHPCGGLPGLRSLHTGGLPCRQLPATLHLPAPRPLGPQLEHHGQASPALPCAVQWGLLLSLHRGGCGDYGARGTHQETGDHGEAGRDF*SCCQGGCG*GGEGEEEEEEGHCGGARGGGARREHAGLVVQVLCLH*HHEGATSTTRALWN*LGGEGGSGQYRGPEGVNEGQGEGKGCQRGEEEENSELWLWPGVRGPREEETQD**A*GIPQRAGVRV**L*GLAAHFQLASGQDRG**GWLHRGGAHCGTLQGLPLRVQSATPRGRVPGSRLRLHLRHVPGHPEQ*PHQCAGPSLCGPGHGPAPC*HQRQS*PLHRHPARQD*HPRQGELHLQAAQPCLWEVL*HRGLLPHGIHADGGCV*LGPGGH**PHWGNQDRPGEPLLQQAPRHLRHRPDLLHTWLQYLAGPHEAQPDPDPPLQRRQSGRPPLWAPWESEGGQPRLHWAL*D*GRERSEEAHRRACGAVGPEALGGHPPRRLPPGARACGDEAAAQPRQAGHRAGPPGAVGGHVPHGHASPWDASGHLTSEAQEVRAAGHHLEHR*GGLGGRRLLHRGEVQ*HLREGVAEGPAGGQAGHRRPLPLPHWRGQLQLALPVPLRLPGGGGEDRHLQEGVHVLLGRDRVQDPRAAHPADLGCGPLLR*RLPGGHRAGPEPVPAGRKDSQAVHHGDGHRGGGRAPRVHLQAKARQRLVAPPGPQ*ER*V*AHGQGGG*AAFTDSRGGREEPSGPGPQ*T*PPRETQPARHGLRLVPQPSQVHQVPHLHPVQVAHHQDRAGAVGAAHVGALPLQPPWLHGQKAPWGM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29166 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 497 FALSE NA FALSE NA LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74708321:+ chr10:75910960-76469721:+ chr10:76468079:+ chr10:75530176,chr10:75530174 chr10:74688857,chr10:74688852 NA NA chr10:77289934,chr10:77289932 chr10:76448615,chr10:76448610 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRR_9-PARTIAL|24-131~|2.8e-16^LRR_4|34-67|2.1e-08^LRR_8|34-65|1.5e-06^LRR_1|34-45|0.024^LRR_6|34-41|0.12^LRR_6|53-68|0.0021^LRR_1|54-67|0.0017^LRR_8|72-112|4.4e-05^LRR_4|75-112|1.5e-07^DHU1_N|75-110|0.0027^LRR_1|77-91|0.027^LRR_6|77-89|0.059^LRR_1|104-112|2.4^DHU1_N-PARTIAL|129-131~|0.0032 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 19 13 19 13 ONLY_REF_SPLICE YES_LDAS 0.4037 GT 1.8892 AG 1.7968 ENST00000611255.5 1-131 ENST00000672394.1 689-813 chr10|+|[0]75431725-75431754[2]|[0]75438394-75438494[1]<==>chr10|+|[1]74708321-74708445[2] atggccgggctcgtggtgcgtggaactcaagtgtcctacataggccaggactgcagagaaattccagagcaccttggcagggactgtggacatttcgcaaagaggcttgatctgagctttaaccttctgagGTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGACTGAATGTATCCGTGCTGGCCACTATGCAGCAAGCATCATAATTAGACGGACTGGCTGCACCTTTCCTGAGAAGCCAGACTTCCACTGA MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLRFSVSTGL*QASD*MYPCWPLCSKHHN*TDWLHLS*EARLPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29167 SVIL::MPP7 ENSG00000197321.16::ENSG00000150054.19 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 490 FALSE NA FALSE NA SVIL ENSG00000197321.16 protein_coding - - chr10:29457338-29736959:- chr10:29657969:- chr10:29746267-30025888:- chr10:29946898:- MPP7 ENSG00000150054.19 protein_coding - - chr10:28050993-28334486:- chr10:28089841:- chr10:28339922-28623415:- chr10:28378770:- chr10:29656860,chr10:29656866 chr10:28104251,chr10:28104245 NA NA chr10:29945789,chr10:29945795 chr10:28393180,chr10:28393174 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:1.12Mb] 17 30 17 30 ONLY_REF_SPLICE YES_LDAS 0.593 GT 1.9329 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29168 CACHD1::ROR1 ENSG00000158966.16::ENSG00000185483.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 498 FALSE NA FALSE NA CACHD1 ENSG00000158966.16 protein_coding + + chr1:64470129-64693058:+ chr1:64679756:+ chr1:64935812-65158741:+ chr1:65145439:+ ROR1 ENSG00000185483.13 protein_coding + + chr1:63774017-64181498:+ chr1:64050686:+ chr1:64239688-64647181:+ chr1:64516358:+ chr1:64680330,chr1:64680330 chr1:64050226,chr1:64050223 NA NA chr1:65146013,chr1:65146013 chr1:64515898,chr1:64515895 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame dCache_1|84-110|0.5^VWA_N|166-203|4.8e-09^VWA|229-383|8.5e-08^dCache_1|239-265|1.9^VWA_N|329-362|1.4^dCache_1|452-523|0.00011^SMK1_alpha_su|470-485|1.4^dCache_1|678-851|4.5e-10^VWA_N|731-746|0.5^SMK1_alpha_su|1094-1114|0.00018 TMEM154-PARTIAL|~452-465|8.6e-05^PK_Tyr_Ser-Thr|474-746|3.6e-98^Pkinase|475-742|1e-44^Haspin_kinase|608-640|7.1e-05^Fz|709-719|7.7 ["Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.29Mb] 15 15 15 15 ONLY_REF_SPLICE YES_LDAS 0.3784 GT 1.8892 AG 1.4256 ENST00000651257.2 1-3406 ENST00000371079.6 452-2814 chr1|+|[0]64470745-64470942[2]|[0]64550594-64550656[2]|[0]64582156-64582304[1]|[2]64602806-64602912[0]|[1]64629355-64629481[1]|[2]64632599-64632743[2]|[0]64634044-64634260[0]|[1]64641820-64641969[0]|[1]64647801-64648034[0]|[1]64652161-64652310[0]|[1]64653758-64653881[1]|[2]64654686-64654803[2]|[0]64658705-64658873[0]|[1]64663695-64663837[2]|[0]64664498-64664679[1]|[2]64666057-64666167[1]|[2]64671564-64671686[1]|[2]64673158-64673257[2]|[0]64673348-64673464[2]|[0]64675401-64675561[1]|[2]64675897-64675983[1]|[2]64676895-64677011[1]|[2]64678159-64678310[0]|[1]64679595-64679756[0]<==>chr1|+|[1]64050686-64050716[1]|[2]64137369-64137496[0]|[1]64140109-64140426[0]|[1]64142405-64142650[0]|[1]64158981-64159192[2]|[0]64177428-64178855[2] atggcccgccagccggaggaagaggagacggccgtggcccgggcgcggcggccgcccctctggctgctctgcctggtcgcgtgctggctcctgggcgccggggccgaagccgacttctccatcctggacgaggcgcaagtgctggcgagccagatgcggaggctggcggccgaggagctgggggtcgtcaccatgcagcggatattcaactcctttgtttacactgagaaaatctcaaatggagaaagtgaagtacagcagctagccaaaaaaatccgagagaagttcaaccgttacttggatgtggtcaatcggaacaagcaagttgtagaagcatcctatacggctcacctaacctctcccctaactgcaattcaagactgctgtactatcccaccttccatgatggaattcgatgggaactttaataccaatgtgtctagaacaattagttgtgatcgactttctactactgttaatagccgggccttcaatccaggacgagacttaaattcagttcttgcagacaacctgaaatccaaccctggaattaagtggcaatatttcagttcagaagaaggaattttcactgttttcccagcacacaagttccggtgtaagggcagctacgaacaccgcagtagacccatctacgtctctacagtccggccgcagtcaaagcacatagtagtgattctggaccacggggcttcagtcacagacactcagcttcagattgccaaggacgctgctcaggtcatcctcagcgccatcgatgaacatgacaagatttctgtgttaactgtggcagataccgtccggacttgctcactagaccagtgctataagaccttcttgtctccagccaccagtgagacaaaaaggaaaatgtccacctttgttagcagcgtgaagtcttcagacagtcctacccagcacgcagtgggattccaaaaggcatttcagctgattcgaagtacaaacaataacacaaagttccaagcaaatacagacatggtcatcatttacctgtcagctggcattacatcaaaggactcttcggaagaagataaaaaagcgactctccaagtcatcaatgaagaaaatagctttctaaacaactctgtaatgattctcacctatgccctcatgaacgatggggtgactggtttgaaagagctggcttttctgagggatctagctgaacagaattcagggaagtacggtgtgccagaccggatggccttgcctgtgattaagggcagcatgatggtgctgaatcagttgagcaacctggagaccacagtgggcaggttctacacaaaccttcccaaccggatgattgatgaagccgtcttcagcctgcccttctctgatgagatgggagatggtttgataatgactgtgagtaaaccctgttattttggaaacctacttctgggaattgtaggtgtggacgtgaatctggcttacattcttgaagacgtgacgtattaccaagactctttggcttcctatacttttctcatagacgacaaaggatatacacttatgcacccatctcttaccaggccatatttattgtcagagcccccacttcatactgacatcatacattatgaaaatattccaaaatttgaattagttcggcaaaatatcctaagcctccctctgggcagccagattatcgcagtccctgtgaactcatccctgtcttggcacataaacaagctgagagaaactggaaaggaagcctacaatgttagctatgcctggaagatggtacaagacacttcctttattctgtgtattgtggtgatacaaccagaaatacctgtgaaacaactgaagaacctcaacactgttcccagcagcaagctgctgtaccaccggctggatctccttggccagcccagtgcttgcctccacttcaaacagctggcaaccctagaaagtcccaccatcatgctgtctgctggcagcttttcctccccctatgagcacctcagccagccagagacaaagcgcatggtagagcactacaccgcctatctcagcgacaacacccgcctcattgctaacccgggcctcaaattctctgtcagaaatgaagtaatggctaccagccacgtcacagatgaatggatgacacaaatggaaatgagtagcctgaacacttacattgtccgccgttacatagcaacacccaatggcgtcctcagaatttatcctggttccctcatggacaaagcatttgatcccactaggagacaatggtatctccatgcagtagctaatccagggttgatttctttgactggtccttacttagatgttggaggagctggttatgttgtgacaatcagtcacacaattcattcatccagtacacagctgtcttctgggcacactgtggctgtgatgggcattgacttcacactcagatacttctacaaagttctgatggacctattacctgtctgtaaccaagatggtggcaacaaaataaggtgcttcataatggaggacaggggttatctggtggcgcacccgactctcatcgaccccaaaggacatgcacctgtggagcagcagcacatcacccacaaggagcccctggtagcaaatgatatcctcaaccaccccaactttgtaaagaaaaacctgtgcaacagcttcagtgacagaacggtccagaggttttataaattcaacaccagccttgcgggggatttgacgaaccttgtgcatggcagccactgttccaaatacagattagcaaggatcccaggaaccaacgcgtttgttggcattgtcaacgaaacctgcgactctcttgccttctgtgcctgcagcatggtggaccgactctgtctcaactgtcaccgaatggaacaaaatgaatgtgaatgtccttgtgagtgccctctagaggtcaatgagtgcactggcaacctcaccaatgcagagaaccgaaaccccagctgcgaggtccaccaggagccggtgacatacacagctattgaccctggcctgcaagatgctcttcaccagtgtgtcaacagcaggtgcagtcagaggctggaaagtggggactgttttggggtgctggattgtgaatggtgcatggtggacagtgatggaaagactcacctggacaaaccctactgtgccccccagaaagaatgcttcggggggattgtgggagccaaaagtccctacgttgatgacatgggagcaataggtgatgaggtgatcacattaaacatgattaaaagcgcccctgtgggtcctgtggctggagggatcatgggatgcatcatggtcttggtcctggcggtgtatgcctaccgccaccagattcatcgccggagccatcagcatatgtctcctcttgctgcccaagGCCCCCCTCCCACTGCAAGTCCAGGATACTCAGATGAGTATGAAGAAGATGGATTCTGTCAGCCATACAGAGGGATTGCATGTGCAAGATTTATTGGCAACCGCACCGTCTATATGGAGTCTTTGCACATGCAAGGGGAAATAGAAAATCAGATCACAGCTGCCTTCACTATGATTGGCACTTCCAGTCACTTATCTGATAAGTGTTCTCAGTTCGCCATTCCTTCCCTGTGCCACTATGCCTTCCCGTACTGCGATGAAACTTCATCCGTCCCAAAGCCCCGTGACTTGTGTCGCGATGAATGTGAAATCCTGGAGAATGTCCTGTGTCAAACAGAGTACATTTTTGCAAGATCAAATCCCATGATTCTGATGAGGCTGAAACTGCCAAACTGTGAAGATCTCCCCCAGCCAGAGAGCCCAGAAGCTGCGAACTGTATCCGGATTGGAATTCCCATGGCAGATCCTATAAATAAAAATCACAAGTGTTATAACAGCACAGGTGTGGACTACCGGGGGACCGTCAGTGTGACCAAATCAGGGCGCCAGTGCCAGCCATGGAATTCCCAGTATCCCCACACACACACTTTCACCGCCCTTCGTTTCCCAGAGCTGAATGGAGGCCATTCCTACTGCCGCAACCCAGGGAATCAAAAGGAAGCTCCCTGGTGCTTCACCTTGGATGAAAACTTTAAGTCTGATCTGTGTGACATCCCAGCGTGCGATTCAAAGGATTCCAAGGAGAAGAATAAAATGGAAATCCTGTACATACTAGTGCCAAGTGTGGCCATTCCCCTGGCCATTGCTTTACTCTTCTTCTTCATTTGCGTCTGTCGGAATAACCAGAAGTCATCGTCGGCACCAGTCCAGAGGCAACCAAAACACGTCAGAGGTCAAAATGTAGAGATGTCAATGCTGAATGCATATAAACCCAAGAGCAAGGCTAAAGAGCTACCTCTTTCTGCTGTACGCTTTATGGAAGAATTGGGTGAGTGTGCCTTTGGAAAAATCTATAAAGGCCATCTCTATCTCCCAGGCATGGACCATGCTCAGCTGGTTGCTATCAAGACCTTGAAAGACTATAACAACCCCCAGCAATGGACGGAATTTCAACAAGAAGCCTCCCTAATGGCAGAACTGCACCACCCCAATATTGTCTGCCTTCTAGGTGCCGTCACTCAGGAACAACCTGTGTGCATGCTTTTTGAGTATATTAATCAGGGGGATCTCCATGAGTTCCTCATCATGAGATCCCCACACTCTGATGTTGGCTGCAGCAGTGATGAAGATGGGACTGTGAAATCCAGCCTGGACCACGGAGATTTTCTGCACATTGCAATTCAGATTGCAGCTGGCATGGAATACCTGTCTAGTCACTTCTTTGTCCACAAGGACCTTGCAGCTCGCAATATTTTAATCGGAGAGCAACTTCATGTAAAGATTTCAGACTTGGGGCTTTCCAGAGAAATTTACTCCGCTGATTACTACAGGGTCCAGAGTAAGTCCTTGCTGCCCATTCGCTGGATGCCCCCTGAAGCCATCATGTATGGCAAATTCTCTTCTGATTCAGATATCTGGTCCTTTGGGGTTGTCTTGTGGGAGATTTTCAGTTTTGGACTCCAGCCATATTATGGATTCAGTAACCAGGAAGTGATTGAGATGGTGAGAAAACGGCAGCTCTTACCATGCTCTGAAGACTGCCCACCCAGAATGTACAGCCTCATGACAGAGTGCTGGAATGAGATTCCTTCTAGGAGACCAAGATTTAAAGATATTCACGTCCGGCTTCGGTCCTGGGAGGGACTCTCAAGTCACACAAGCTCTACTACTCCTTCAGGGGGAAATGCCACCACACAGACAACCTCCCTCAGTGCCAGCCCAGTGAGTAATCTCAGTAACCCCAGATATCCTAATTACATGTTCCCGAGCCAGGGTATTACACCACAGGGCCAGATTGCTGGTTTCATTGGCCCGCCAATACCTCAGAACCAGCGATTCATTCCCATCAATGGATACCCAATACCTCCTGGATATGCAGCGTTTCCAGCTGCCCACTACCAGCCAACAGGTCCTCCCAGAGTGATTCAGCACTGCCCACCTCCCAAGAGTCGGTCCCCAAGCAGTGCCAGTGGGTCGACTAGCACTGGCCATGTGACTAGCTTGCCCTCATCAGGATCCAATCAGGAAGCAAATATTCCTTTACTACCACACATGTCAATTCCAAATCATCCTGGTGGAATGGGTATCACCGTTTTTGGCAACAAATCTCAAAAACCCTACAAAATTGACTCAAAGCAAGCATCTTTACTAGGAGACGCCAATATTCATGGACACACCGAATCTATGATTTCTGCAGAACTGTAA MARQPEEEETAVARARRPPLWLLCLVACWLLGAGAEADFSILDEAQVLASQMRRLAAEELGVVTMQRIFNSFVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDGNFNTNVSRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSYEHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITSKDSSEEDKKATLQVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVPDRMALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHFKQLATLESPTIMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLAGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRLESGDCFGVLDCEWCMVDSDGKTHLDKPYCAPQKECFGGIVGAKSPYVDDMGAIGDEVITLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQIHRRSHQHMSPLAAQGPPPTASPGYSDEYEEDGFCQPYRGIACARFIGNRTVYMESLHMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSSVPKPRDLCRDECEILENVLCQTEYIFARSNPMILMRLKLPNCEDLPQPESPEAANCIRIGIPMADPINKNHKCYNSTGVDYRGTVSVTKSGRQCQPWNSQYPHTHTFTALRFPELNGGHSYCRNPGNQKEAPWCFTLDENFKSDLCDIPACDSKDSKEKNKMEILYILVPSVAIPLAIALLFFFICVCRNNQKSSSAPVQRQPKHVRGQNVEMSMLNAYKPKSKAKELPLSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDYNNPQQWTEFQQEASLMAELHHPNIVCLLGAVTQEQPVCMLFEYINQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQSKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQLLPCSEDCPPRMYSLMTECWNEIPSRRPRFKDIHVRLRSWEGLSSHTSSTTPSGGNATTQTTSLSASPVSNLSNPRYPNYMFPSQGITPQGQIAGFIGPPIPQNQRFIPINGYPIPPGYAAFPAAHYQPTGPPRVIQHCPPPKSRSPSSASGSTSTGHVTSLPSSGSNQEANIPLLPHMSIPNHPGGMGITVFGNKSQKPYKIDSKQASLLGDANIHGHTESMISAEL* FALSE TRUE hsa-mir-4794 chr1:64579847-64579923:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Tyrosine-protein kinase transmembrane receptor ROR1 TK Ror Q01973 TRUE Ovary exact TRUE Ovarian serous cystadenocarcinoma OVARY exact 64936625 FALSE 64624664 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29176 NUP98::BEAN1 ENSG00000110713.18::ENSG00000166546.15 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 499 FALSE NA FALSE NA NUP98 ENSG00000110713.18 protein_coding - - chr11:3671083-3797792:- chr11:3797400:- chr11:3692313-3819022:- chr11:3818630:- BEAN1 ENSG00000166546.15 protein_coding + + chr16:66427295-66493529:+ chr16:66477560:+ chr16:66461198-66527432:+ chr16:66511463:+ chr11:3784601,chr11:3784609 chr16:66470037,chr16:66470029 NA NA chr11:3805831,chr11:3805839 chr16:66503940,chr16:66503932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NUP98:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr16] 10 9 10 9 ONLY_REF_SPLICE YES_LDAS 0.2397 GT 1.371 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleoporin 98kDa 1 AML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29177 UBN1::UBALD1 ENSG00000118900.15::ENSG00000153443.13 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBN1 ENSG00000118900.15 protein_coding + + chr16:4846665-4882401:+ chr16:4861102:+ chr16:4896666-4932402:+ chr16:4911103:+ UBALD1 ENSG00000153443.13 protein_coding - - chr16:4608883-4615027:- chr16:4610555:- chr16:4658884-4665028:- chr16:4660556:- chr16:4866391,chr16:4866391 chr16:4614005,chr16:4614004 NA NA chr16:4916392,chr16:4916392 chr16:4664006,chr16:4664005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HUN|117-168|7.9e-26^Cellulose_synt|131-255|0.001^UBN_AB|154-191|0.086^HUN|202-211|2.6^UBN_AB|245-245|3^UBN_AB|353-573|7.5e-79 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.23Mb] 7 1 7 1 ONLY_REF_SPLICE YES_LDAS 0.1009 GT 1.8892 AG 1.6729 ENST00000262376.11 1-1110 ENST00000283474.12 121-534 chr16|+|[0]4852918-4853166[2]|[0]4857990-4858076[2]|[0]4858568-4858663[2]|[0]4859025-4859159[2]|[0]4859865-4859968[1]|[2]4860664-4861102[2]<==>chr16|-|[2]4609633-4609983[0]|[2]4610493-4610555[0] atgtcggagccccacagggtccagttcacctctctcccaggttccctgaatcctgcgtttttgaagaagtcccggaaggaggaggctggggcaggagaacagcatcaggactgtgagccggctgcagcagctgttcggattacactcaccctctttgaaccagatcacaaacgctgcccagagttcttctacccagagctggtgaagaatatccgagggaaggtaaaaggccttcagcctggagataagaagaaagatctgtcagatcctttcaatgacgaagaaaaggaaaggcataaagtagaggcccttgcccgaaaatttgaagaaaaatacggtggaaagaaacgtagaaaagaccgaatacaggacttgatcgatatggggtatggttatgatgaatccgactccttcatcgataactctgaggcgtatgatgagcttgttcctgcttctttgactacgaagtatggaggattttacattaactcgggaaccctgcagtttagacaagcatcagagtctgaagatgacttcattaaagaaaagaagaaaaaatctccaaagaagcggaagttgaaggaaggtggtgagaagataaagaagaagaaaaaagatgacacttatgacaaggagaagaaatcgaaaaagtccaagttttccaaagccggcttcacagccctcaatgccagtaaggagaagaagaagaagaaatattctggggctttaagcgttaaagagatgctaaagaaatttcagaaagagaaagaggctcagaaaaaaagggaggaggagcataagcctgttgcggtcccatcagcggaagctcagggcctgcgggaactggagggtgcctctgaccccttgctctcactctttggctctacttctgacaacgacttgctccaggcggccactgccatggactcgctgacggatttggacttggagcatctgctcagtgagtctccagaaggaagtcccttccgagatatggatgatggaagtgattcccttggggtgggattggaccaggaattcaggcagccctcttctctccccgaaggcctgccagcacccctggagaagcgcgttaaggagctggctcagACAGCCCTCAGCGCCTTTTTCCAGGAGACCAACATCCCCTACAGCCACCATCACCACCAGATGATGTGCACCCCCGCCAATACCCCTGCTACACCCCCCAACTTCCCTGACGCTCTCACCATGTTCTCCCGTCTCAAGGCCTCCGAGAGCTTCCACAGCGGTGGCAGCGGCAGCCCGATGGCCGCGACAGCCACGTCACCCCCGCCACACTTCCCCCATGCCGCCACCAGCAGCTCTGCGGCCTCCAGCTGGCCCACGGCGGCCTCGCCCCCGGGGGGCCCACAGCACCACCAGCCACAGCCGCCCCTGTGGACTCCAACACCCCCTTCTCCGGCTTCAGACTGGCCACCCCTGGCCCCCCAACAGGCCACCTCAGAACCCAGGGCCCACCCTGCCATGGAGGCAGAGAGATAA MSEPHRVQFTSLPGSLNPAFLKKSRKEEAGAGEQHQDCEPAAAAVRITLTLFEPDHKRCPEFFYPELVKNIRGKVKGLQPGDKKKDLSDPFNDEEKERHKVEALARKFEEKYGGKKRRKDRIQDLIDMGYGYDESDSFIDNSEAYDELVPASLTTKYGGFYINSGTLQFRQASESEDDFIKEKKKKSPKKRKLKEGGEKIKKKKKDDTYDKEKKSKKSKFSKAGFTALNASKEKKKKKYSGALSVKEMLKKFQKEKEAQKKREEEHKPVAVPSAEAQGLRELEGASDPLLSLFGSTSDNDLLQAATAMDSLTDLDLEHLLSESPEGSPFRDMDDGSDSLGVGLDQEFRQPSSLPEGLPAPLEKRVKELAQTALSAFFQETNIPYSHHHHQMMCTPANTPATPPNFPDALTMFSRLKASESFHSGGSGSPMAATATSPPPHFPHAATSSSAASSWPTAASPPGGPQHHQPQPPLWTPTPPSPASDWPPLAPQQATSEPRAHPAMEAER* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29179 MSI2::RNF123 ENSG00000153944.12::ENSG00000164068.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 501 FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57596950:+ chr17:55333212-55762050:+ chr17:55674311:+ RNF123 ENSG00000164068.16 protein_coding + + chr3:49689538-49721529:+ chr3:49697143:+ chr3:49726971-49758962:+ chr3:49734576:+ chr17:57611168 chr3:49695648 NA NA chr17:55688529 chr3:49733081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_7|22-87|3.3e-07^RRM_1|24-91|1.1e-20^RRM_3|25-48|0.041^SET1_RBD|36-58|0.0009^DUF4651|36-48|0.0052^Nup35_RRM_2|38-74|0.0034^PHM7_cyt|50-89|0.019^CSD|59-71|0.083^NID|66-96|0.047^RRM_7|110-177|5.2e-07^PHM7_cyt|110-180|0.00015^RRM_1|112-178|3.7e-18^Nup35_RRM_2|112-162|0.00092^RRM_3|115-173|0.005^DUF4651|121-147|0.02^SET1_RBD|125-137|0.081^CSD|145-179|0.00055^NID|155-188|0.00047 SPRY-PARTIAL|~168-251|1.9e-31^zf-RING_10|1062-1075|8^Prok-RING_4|1070-1077|0.34^zf-C3HC4_2|1071-1076|7^FdhE|1233-1294|0.00019^zf-C3HC4_3|1251-1297|5.2e-13^zf-RING_2|1253-1292|2.9e-08^zf-C3HC4|1254-1291|6.3e-08^zf-C3HC4_2|1254-1291|4.9e-06^zf-C3HC4_4|1254-1291|0.00037^zf-RING_UBOX|1254-1291|0.00054^zf-RING_5|1254-1293|5.7e-05^Prok-RING_4|1254-1295|0.0015^zf-RING_10|1258-1293|0.00052 ["MSI2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr3] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1514 GT 1.4716 AG 1.9086 ENST00000284073.7 1-537 ENST00000327697.11 168-3945 chr17|+|[0]57256743-57256804[1]|[2]57257098-57257138[0]|[1]57257466-57257547[1]|[2]57258270-57258354[2]|[0]57262151-57262192[2]|[0]57401379-57401471[2]|[0]57529676-57529724[0]|[1]57596868-57596950[2]<==>chr3|+|[2]49697143-49697222[0]|[1]49697363-49697457[2]|[0]49697885-49697939[0]|[1]49698052-49698137[2]|[0]49698440-49698526[2]|[0]49698755-49698822[1]|[2]49698980-49699105[1]|[2]49699468-49699582[2]|[0]49699668-49699772[2]|[0]49700227-49700352[2]|[0]49700472-49700564[2]|[0]49700636-49700709[1]|[2]49701491-49701608[2]|[0]49701811-49701910[0]|[1]49702083-49702144[2]|[0]49702334-49702405[2]|[0]49702633-49702753[0]|[1]49703427-49703528[0]|[1]49704650-49704756[2]|[0]49704984-49705182[0]|[1]49705534-49705679[2]|[0]49705982-49706065[2]|[0]49706791-49706898[2]|[0]49712479-49712656[0]|[1]49713513-49713587[0]|[1]49713738-49713825[1]|[2]49713910-49713997[2]|[0]49714090-49714174[0]|[1]49715575-49715714[2]|[0]49715822-49716010[2]|[0]49716102-49716177[0]|[1]49716393-49716477[1]|[2]49720511-49720653[0]|[1]49720800-49720894[2]|[0]49721020-49721105[1]|[2]49721185-49721305[2] atggaggcaaatgggagccaaggcacctcgggcagcgccaacgactcccagcacgaccccggtaaaatgtttatcggtggactgagctggcagacctcaccagatagccttagagactattttagcaaatttggagaaattagagaatgtatggtcatgagagatcccactacgaaacgctccagaggcttcggtttcgtcacgttcgcagacccagcaagtgtagataaagtattaggtcagccccaccatgagttagattccaagacgattgaccccaaagttgcatttcctcgtcgagcgcaacccaagatggtcacaagaacaaagaaaatatttgtaggcgggttatctgcgaacacagtagtggaagatgtaaagcaatatttcgagcagtttggcaaggtggaagatgcaatgctgatgtttgataaaactaccaacaggcacagagggtttggctttgtcacttttgagaatgaagatgttgtggagaaagtctgtgagattcatttccatgaaatcaataataaaatgGAAACCCCTGAACTTCCAGAACCTGCCAGAACATTTGGACCAGTTGCTACAGGTGGACAATGAGGAGGAGGAAAGCCAGGGACAGGTTGAAGGGCGGCTTGGCCCATCCACTGTGGTCCTGGACCACACAGGCGGCTTTGAGGGGCTTCTCCTGGTGGATGATGACCTGCTGGGGGTGATTGGACACAGCAACTTTGGCACCATCCGCTCTACCACATGCGTGTACAAAGGGAAATGGCTCTACGAGGTCCTCATCTCCTCCCAGGGGCTCATGCAGATCGGCTGGTGCACCATCAGCTGCCGCTTCAACCAGGAGGAGGGGGTTGGAGATACACACAACTCCTATGCCTATGATGGCAACCGCGTGCGCAAGTGGAATGTGACCACAACGAATTATGGCAAGGCGTGGGCAGCGGGGGACATCGTGAGCTGCCTGATTGACCTGGATGATGGCACTCTGTCCTTCTGCCTGAACGGTGTATCACTGGGCACTGCCTTTGAGAACCTGTCCAGGGGCCTGGGTATGGCCTACTTCCCAGCCATCAGCCTCTCTTTCAAGGAGTCCGTGGCCTTCAACTTTGGCAGCCGTCCTCTGCGCTACCCAGTGGCAGGCTACCGGCCCCTGCAGGACCCACCGAGTGCTGACCTGGTGCGGGCACAGAGGTTGCTGGGCTGCTTCCGGGCAGTGCTGAGTGTGGAGCTGGACCCTGTGGAGGGGCGGCTGTTGGACAAGGAGAGCTCCAAGTGGCGGTTGCGGGGCCAGCCCACCGTCCTCCTCACACTGGCCCACATCTTCCATCACTTTGCACCGCTTCTGCGCAAGGTGTATCTGGTGGAGGCTGTGCTCATGAGCTTCTTGCTGGGCATCGTGGAGAAGGGCACACCCACACAGGCACAGTCCGTGGTGCACCAGGTCCTGGACCTCTTGTGGCTCTTCATGGAGGACTACGAGGTACAAGATTGCCTCAAGCAGTTGATGATGTCTCTGCTTCGGCTGTACCGATTCTCACCCATTGTCCCAGACCTGGGCCTACAGATCCATTACCTGCGGCTCACTATCGCCATCCTGAGGCATGAGAAGTCCCGCAAGTTTCTGCTTAGCAATGTCCTCTTCGACGTGCTCCGCTCCGTCGTCTTCTTTTACATCAAGAGCCCCCTGCGTGTGGAGGAGGCCGGCCTGCAGGAGCTCATTCCCACCACCTGGTGGCCCCACTGCTCCAGTAGGGAGGGCAAAGAGAGCACGGAGATGAAGGAGGAGACCGCAGAGGAGCGGCTGCGGCGGCGAGCCTACGAACGGGGCTGTCAGCGGCTCAGGAAGCGCATCGAAGTGGTGGAAGAACTACAGGTCCAGATCCTGAAGCTGCTGCTGGACAATAAAGATGACAATGGGGGTGAAGCTTCTAGGTATATCTTCCTGACCAAGTTTCGCAAGTTTCTGCAGGAGAACGCCAGTGGCCGGGGGAACATGCCCATGCTCTGCCCCCCTGAGTACATGGTCTGCTTCTTACACCGGCTGATCTCTGCCCTGCGCTACTATTGGGATGAATACAAGGCTTCCAATCCTCATGCTTCCTTCAGTGAGGAGGCCTACATCCCGCCCCAGGTCTTCTATAATGGCAAGGTGGACTACTTTGACCTGCAGCGCCTGGGGGGCCTCCTCTCGCACCTGCGGAAGACCCTCAAAGATGACCTTGCTTCCAAAGCCAACATTGTGATCGACCCACTGGAGCTCCAGTCAACCGCCATGGATGACCTAGATGAGGATGAGGAGCCAGCCCCAGCTATGGCCCAGCGCCCCATGCAGGCCCTGGCTGTTGGGGGGCCACTGCCCCTGCCCCGGCCCGGCTGGCTCAGTTCTCCAACTTTGGGCCGAGCCAACCGCTTCCTCAGCACAGCGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCCGTGAGGACATTGAAGGCAGCCACTGGAATGAGGGCTTGCTGCTGGGGCGGCCCCCCGAGGAGCCTGAGCAGCCCCTCACCGAGAACTCGCTGCTGGAAGTCCTGGATGGGGCGGTCATGATGTACAACCTCAGCGTACACCAGCAGCTGGGCAAGATGGTGGGTGTCTCCGATGATGTCAATGAATACGCTATGGCTCTGAGGGACACAGAGGACAAGCTCCGCCGGTGCCCCAAGAGGAGGAAGGACATCCTTGCAGAGTTGACCAAGAGCCAGAAGGTTTTCTCAGAAAAGCTGGACCACCTGAGCCGCCGTCTTGCCTGGGTCCATGCCACTGTCTACTCCCAGGAGAAGATGCTGGACATCTACTGGCTGCTGCGCGTCTGCCTGCGGACCATTGAGCACGGTGATCGCACAGGGTCTCTCTTTGCCTTCATGCCCGAGTTCTACCTGAGCGTGGCCATCAACAGCTACAGTGCTCTCAAGAATTACTTTGGTCCCGTGCACAGCATGGAGGAGCTCCCAGGCTATGAAGAGACCCTGACCCGCCTGGCTGCCATTCTCGCCAAACACTTTGCCGACGCACGCATTGTGGGCACTGACATCCGAGACTCACTGATGCAGGCCCTGGCCAGCTACGTGTGCTACCCACACTCCCTGCGGGCTGTGGAGCGAATCCCCGAGGAGCAGCGTATCGCCATGGTGAGGAACCTCCTGGCGCCCTATGAGCAGCGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGGGGCTGTGGCTTCGGGTACCGCTATACACGGCTGCCACATCTGCTGAAAACCAAACTTGAGGACGCCAATTTGCCCAGCCTCCAGAAGCCCTGCCCTTCCACCCTGCTGCAGCAGCACATGGCGGACCTCCTACAGCAGGGTCCTGATGTGGCACCCAGCTTCCTCAACAGCGTCCTCAATCAGCTCAACTGGGCCTTCTCTGAATTCATTGGCATGATCCAAGAGATCCAGCAGGCTGCTGAGCGCCTGGAGCGGAACTTTGTGGACAGCCGGCAGCTCAAGGTATGTGCCACCTGCTTTGACCTCTCGGTCAGCCTGCTGCGTGTCTTGGAGATGACTATCACACTGGTGCCTGAGATATTCCTTGACTGGACCCGGCCTACCTCTGAGATGCTGCTGCGGCGTCTTGCACAGCTGCTAAACCAGGTGCTGAACCGGGTGACAGCTGAGAGGAACCTGTTTGATCGTGTGGTCACCCTACGGCTGCCTGGCCTAGAGAGCGTGGACCACTATCCCATTCTGGTGGCAGTGACGGGCATCCTGGTGCAGCTCCTGGTGCGTGGCCCAGCCTCAGAGAGAGAGCAAGCCACATCAGTGCTCCTGGCAGATCCCTGCTTCCAGCTACGCTCAATATGCTATCTCCTGGGACAGCCAGAGCCCCCAGCACCTGGCACTGCTCTGCCAGCCCCTGACCGGAAGCGCTTCTCCCTGCAGAGCTATGCGGATTATATCAGTGCCGATGAGCTGGCCCAAGTGGAACAGATGCTGGCGCACCTGACCTCTGCATCTGCCCAGGCAGCAGCTGCCTCCCTGCCCACCAGTGAGGAGGACCTCTGCCCCATCTGCTATGCCCACCCCATCTCTGCTGTGTTCCAGCCCTGTGGCCACAAGTCCTGCAAAGCCTGTATCAACCAGCACCTGATGAACAACAAGGACTGCTTCTTCTGCAAAACCACCATCGTGTCTGTAGAGGACTGGGAGAAGGGAGCCAATACGAGTACTACCTCCTCAGCTGCCTAG MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMETPELPEPARTFGPVATGGQ*GGGKPGTG*RAAWPIHCGPGPHRRL*GASPGG**PAGGDWTQQLWHHPLYHMRVQREMALRGPHLLPGAHADRLVHHQLPLQPGGGGWRYTQLLCL*WQPRAQVECDHNELWQGVGSGGHRELPD*PG*WHSVLLPERCITGHCL*EPVQGPGYGLLPSHQPLFQGVRGLQLWQPSSALPSGRLPAPAGPTEC*PGAGTEVAGLLPGSAECGAGPCGGAAVGQGELQVAVAGPAHRPPHTGPHLPSLCTASAQGVSGGGCAHELLAGHRGEGHTHTGTVRGAPGPGPLVALHGGLRGTRLPQAVDDVSASAVPILTHCPRPGPTDPLPAAHYRHPEA*EVPQVSA*QCPLRRAPLRRLLLHQEPPACGGGRPAGAHSHHLVAPLLQ*GGQREHGDEGGDRRGAAAAASLRTGLSAAQEAHRSGGRTTGPDPEAAAGQ*R*QWG*SF*VYLPDQVSQVSAGERQWPGEHAHALPP*VHGLLLTPADLCPALLLG*IQGFQSSCFLQ*GGLHPAPGLL*WQGGLL*PAAPGGPPLAPAEDPQR*PCFQSQHCDRPTGAPVNRHG*PR*G*GASPSYGPAPHAGPGCWGATAPAPARLAQFSNFGPSQPLPQHSGCEPHDPTAASEHLGESEGPHAERGAEDP*GH*RQPLE*GLAAGAAPRGA*AAPHRELAAGSPGWGGHDVQPQRTPAAGQDGGCLR*CQ*IRYGSEGHRGQAPPVPQEEEGHPCRVDQEPEGFLRKAGPPEPPSCLGPCHCLLPGEDAGHLLAAARLPADH*AR*SHRVSLCLHARVLPERGHQQLQCSQELLWSRAQHGGAPRL*RDPDPPGCHSRQTLCRRTHCGH*HPRLTDAGPGQLRVLPTLPAGCGANPRGAAYRHGEEPPGAL*AAALGPDQLDPGAALEGLWLRVPLYTAATSAENQT*GRQFAQPPEALPFHPAAAAHGGPPTAGS*CGTQLPQQRPQSAQLGLL*IHWHDPRDPAGC*APGAELCGQPAAQGMCHLL*PLGQPAACLGDDYHTGA*DIP*LDPAYL*DAAAASCTAAKPGAEPGDS*EEPV*SCGHPTAAWPRERGPLSHSGGSDGHPGAAPGAWPSLRERASHISAPGRSLLPATLNMLSPGTARAPSTWHCSASP*PEALLPAELCGLYQCR*AGPSGTDAGAPDLCICPGSSCLPAHQ*GGPLPHLLCPPHLCCVPALWPQVLQSLYQPAPDEQQGLLLLQNHHRVCRGLGEGSQYEYYLLSCL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29184 TFEB::PGC ENSG00000112561.19::ENSG00000096088.16 NIHOVCAR3 SRR8615445 SRR8670698 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 506 FALSE NA FALSE NA TFEB ENSG00000112561.19 protein_coding - - chr6:41683978-41736259:- chr6:41735350:- chr6:41651716-41703997:- chr6:41703088:- PGC ENSG00000096088.16 protein_coding - - chr6:41736711-41754109:- chr6:41744808:- chr6:41704449-41721847:- chr6:41712546:- chr6:41707767,chr6:41707773 chr6:41749754,chr6:41749757 NA NA chr6:41675505,chr6:41675511 chr6:41717492,chr6:41717495 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TFEB:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.00Mb];LOCAL_REARRANGEMENT:-:[452] 5 3 5 3 ONLY_REF_SPLICE YES_LDAS 0.1009 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Stomach exact TRUE Ovarian serous cystadenocarcinoma,Stomach adenocarcinoma OVARY,STOMACH exact 41703088,41703088|41703088|41700387|41703884 TRUE,TRUE|TRUE|FALSE|FALSE 41711127,41712546|41710227|41712546|41710227 FALSE,TRUE|FALSE|TRUE|FALSE YES,PARTIALLY 5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE transcription factor EB 1 renal cell carcinoma (childhood epithelioid) epithelial,mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29189 NIBAN2::METRNL ENSG00000136830.12::ENSG00000176845.13 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 509 FALSE NA FALSE NA NIBAN2 ENSG00000136830.12 protein_coding - - chr9:127505339-127578989:- chr9:127523679:- chr9:130267618-130341268:- chr9:130285958:- METRNL ENSG00000176845.13 protein_coding + + chr17:83079609-83095122:+ chr17:83093167:+ chr17:81037485-81052867:+ chr17:81050912:+ chr9:127517965,chr9:127517969 chr17:83085760,chr17:83085756 NA NA chr9:130280244,chr9:130280248 chr17:81043636,chr17:81043632 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PH|70-192|5.5e-08^DUF5740|256-320|3.6e-05 none none 516 319 516 319 ONLY_REF_SPLICE YES_LDAS 8.3968 GT 1.9329 AG 1.4566 ENST00000373312.4 1-589 ENST00000571814.1 311-690 chr9|-|[0]127523679-127523846[1]|[0]127525058-127525163[0]|[2]127527194-127527322[0]|[2]127531648-127531778[1]|[0]127568820-127568874[0]<==>chr17|+|[1]83093167-83093226[0]|[1]83094256-83094575[2] atgggggacgtgctgtccacgcacctggacgacgcccggcgccagcacatcgcagaaaaaaccgggaagatcctgacggagttcctccagttctatgaagaccagtatggcgtggctctcttcaacagcatgcgccatgagattgagggcacggggctgccgcaggcccagctgctctggcgcaaggtgccactggacgagcgcatcgtcttctcggggaacctcttccagcaccaggaggacagcaagaagtggagaaaccgcttcagcctcgtgccccacaactacgggctggtgctctacgaaaacaaagcggcctatgagcggcaggtcccaccacgagccgtcatcaacagtgcaggctacaaaatcctcacgtccgtggaccaatacctggagctcattggcaactccttaccagggaccacggcaaagtcgggcagtgcccccatcctcaagtgccccacacagttcccgctcatcctctggcatccttatgcgcgtcactactacttctgcatgatgacagaagccgagcaggacaagtggcaggctgtgctgcaggactgcatccggcactgcaacaatgCGCCGTGCCGTCCCTGCAGTGACACCGAGGTGCTCCTAGCCGTCTGCACCAGCGACTTCGCCGTTCGAGGCTCCATCCAGCAAGTTACCCACGAGCCTGAGCGGCAGGACTCAGCCATCCACCTGCGCGTGAGCAGACTCTATCGGCAGAAAAGCAGGGTCTTCGAGCCGGTGCCCGAGGGTGACGGCCACTGGCAGGGGCGCGTCAGGACGCTGCTGGAGTGTGGCGTGCGGCCGGGGCATGGCGACTTCCTCTTCACTGGCCACATGCACTTCGGGGAGGCGCGGCTCGGCTGTGCCCCACGCTTCAAGGACTTCCAGAGGATGTACAGGGATGCCCAGGAGAGGGGGCTGAACCCTTGTGAGGTTGGCACGGACTGA MGDVLSTHLDDARRQHIAEKTGKILTEFLQFYEDQYGVALFNSMRHEIEGTGLPQAQLLWRKVPLDERIVFSGNLFQHQEDSKKWRNRFSLVPHNYGLVLYENKAAYERQVPPRAVINSAGYKILTSVDQYLELIGNSLPGTTAKSGSAPILKCPTQFPLILWHPYARHYYFCMMTEAEQDKWQAVLQDCIRHCNNAPCRPCSDTEVLLAVCTSDFAVRGSIQQVTHEPERQDSAIHLRVSRLYRQKSRVFEPVPEGDGHWQGRVRTLLECGVRPGHGDFLFTGHMHFGEARLGCAPRFKDFQRMYRDAQERGLNPCEVGTD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29190 CPT1A::KRTAP5-11 ENSG00000110090.13::ENSG00000204571.7 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68804000:- chr11:68522088-68611878:- chr11:68571468:- KRTAP5-11 ENSG00000204571.7 protein_coding - - chr11:71581855-71603353:- chr11:71582157:- chr11:71292901-71314399:- chr11:71293203:- chr11:68801754,chr11:68801757 chr11:71582533,chr11:71582533 NA NA chr11:68569222,chr11:68569225 chr11:71293579,chr11:71293579 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:2.74Mb] 296 129 296 129 ONLY_REF_SPLICE YES_LDAS 4.2738 GT 1.9086 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29193 CDC42::ERRFI1-DT ENSG00000070831.18::ENSG00000238290.1 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE FALSE TRUE 511 FALSE NA FALSE NA CDC42 ENSG00000070831.18 protein_coding + + chr1:22052627-22101360:+ chr1:22052742:+ chr1:22379120-22427853:+ chr1:22379235:+ ERRFI1-DT ENSG00000238290.1 lncRNA + + chr1:8026738-8122702:+ chr1:8121474:+ chr1:8086798-8182762:+ chr1:8181534:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC42:Oncogene"] 33 1 33 1 ONLY_REF_SPLICE YES_LDAS 0.3419 GT 1.6402 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29194 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 510 FALSE NA FALSE NA SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128084710:+ chr5:127419458-127525369:+ chr5:127420402:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127754268:+ chr5:127039053-127277199:+ chr5:127089960:+ chr5:128103305,chr5:128103305 chr5:127718018,chr5:127718015 NA NA chr5:127438997,chr5:127438997 chr5:127053710,chr5:127053707 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AA_permease_N|202-253|1.4e-28^AA_permease-PARTIAL|290-756~|5.3e-139^AA_permease_2|314-733|3.1e-23 TMF_DNA_bd-PARTIAL|~115-169|3.2e-05^HrpB7|115-157|0.022^HOOK-PARTIAL|~115-154|0.0017^DUF16-PARTIAL|~115-158|0.13^XLF-PARTIAL|~115-131|0.1^Fib_alpha-PARTIAL|~115-141|0.23^UPF0242-PARTIAL|~115-144|0.0037^SlyX|116-149|0.2^PspA_IM30|133-156|0.034^Fib_alpha|134-236|0.003^HOOK|195-236|0.0003^XLF|201-235|0.00025^PspA_IM30|203-238|7.1e-06^SlyX|203-241|2.8e-05^TMF_DNA_bd|203-237|0.00047^DUF16|204-237|0.00055^UPF0242|207-236|0.005^HrpB7|208-237|0.024 ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 25 13 25 13 ONLY_REF_SPLICE YES_LDAS 0.3821 GT 1.7056 AG 1.9899 ENST00000262461.7 1-756 ENST00000514853.5 115-822 chr5|+|[0]128083955-128084710[2]<==>chr5|+|[0]127754268-127754375[2]|[0]127797103-127797234[2]|[0]127798106-127798162[2]|[0]127875538-127875661[0]|[1]127941182-127941468[2] atggagccgcggcccacggcgccctcctccggcgccccgggactggccggggtcggggagacgccgtcagccgctgcgctggccgcagccagggtggaactgcccggcacggctgtgccctcggtgccggaggatgctgcgcccgcgagccgggacggcggcggggtccgcgatgagggccccgcggcggccggggacgggctgggcagacccttggggcccaccccgagccagagccgtttccaggtggacctggtttccgagaacgccgggcgggccgctgctgcggcggcggcggcggcggcggcagcggcggcggctggtgctggggcgggggccaagcagacccccgcggacggggaagccagcggcgagagcgagccggctaaaggcagcgaggaagccaagggccgcttccgcgtgaacttcgtggacccagctgcctcctcgtcggctgaagacagcctgtcagatgctgccggggtcggagtcgacgggcccaacgtgagcttccagaacggcggggacacggtgctgagcgagggcagcagcctgcactccggcggcggcggcggcagtgggcaccaccagcactactattatgatacccacaccaacacctactacctgcgcaccttcggccacaacaccatggacgctgtgcccaggatcgatcactaccggcacacagccgcgcagctgggcgagaagctgctccggcctagcctggcggagctccacgacgagctggaaaagAAAGCGTCCCTGGATACTGGACAGATGGCGTTTACCTTGGCCCAACTTGAGTCCTTGGAGATTTGCCTGAAAGAAGCAGAAGAAAAGGCTAAAGCTTTATCTGAACAGCTTTCAGTCTCTGAAGGAACAAAATCAAAACTGCTTGAACAAGTATCCCGGCTGGAGGAAAAACTGGAGGCTGTGGACCACAAGGAAGCCAGTGGGGGACCATATGAAAAAATGGTTCTTGTGAAAGACCAGTGCATCCAGAAATTGCAAGCTGAAGTAAAAGCTTCCCAGGAGCAACTTATAGCCCAGAAACTAAAGCATGAAAAGAAAGTGAAAAAACTACAGACTGATTTGGCAACAGCTAATGCCATCACAGTTCTGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAGAAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGGTCTCTGATGAGAATTTGTAG MEPRPTAPSSGAPGLAGVGETPSAAALAAARVELPGTAVPSVPEDAAPASRDGGGVRDEGPAAAGDGLGRPLGPTPSQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAGAKQTPADGEASGESEPAKGSEEAKGRFRVNFVDPAASSSAEDSLSDAAGVGVDGPNVSFQNGGDTVLSEGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELHDELEKKASLDTGQMAFTLAQLESLEICLKEAEEKAKALSEQLSVSEGTKSKLLEQVSRLEEKLEAVDHKEASGGPYEKMVLVKDQCIQKLQAEVKASQEQLIAQKLKHEKKVKKLQTDLATANAITVLELNEKIKTLYEGKPAPREDSLLEGFCGGLPPVEEGDRKISLIMELSTQVSLQTERITQLKEVLEEKERKIQQLEAERSPHPPQEVKDPPGCLPEAPVFSTHDIPPVVSDENL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29197 CHD7::C8orf34 ENSG00000171316.14::ENSG00000165084.16 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 512 FALSE NA FALSE NA CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60781430:+ chr8:61591299-61780587:+ chr8:61693989:+ C8orf34 ENSG00000165084.16 protein_coding + + chr8:68330955-68819023:+ chr8:68439499:+ chr8:69243190-69731258:+ chr8:69351734:+ chr8:60789000,chr8:60788999 chr8:68361890,chr8:68361886 NA NA chr8:61701559,chr8:61701558 chr8:69274125,chr8:69274121 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Chromo|801-861|1.5e-13^Chromo|883-934|1.6e-16^ResIII|967-1136|2.6e-10^SNF2-rel_dom|971-1257|1.5e-83^DEAD|984-1142|4.3e-09^MUN|1177-1231|1.8e-05^HDA2-3|1239-1422|5.5e-07^Helicase_C|1292-1404|2.9e-26^CHDCT2|1612-1630|0.057^CHDCT2|1784-1817|0.00093^Myb_DNA-bind_7|1961-1993|2.6e-05^CHDCT2-PARTIAL|2094-2096~|0.00031 DUF5586-PARTIAL|~328-499|6.6e-250^Glycoprotein_G-PARTIAL|~328-358|6.2e-05^Glycoprotein_G|506-530|0.08 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:7.46Mb] 20 9 20 8.69 ONLY_REF_SPLICE YES_LDAS 0.2885 GT 1.6729 AG 1.8295 ENST00000695853.1 1-2096 ENST00000518698.6 328-1617 chr8|+|[0]60741433-60743097[2]|[0]60781000-60781430[1]<==>chr8|+|[0]68439499-68439646[0]|[1]68446329-68446460[0]|[1]68468692-68468820[0]|[1]68488023-68488051[2]|[0]68521799-68521971[1]|[2]68532983-68533149[0]|[1]68640376-68640511[1]|[2]68708994-68709079[0]|[1]68721361-68721437[2]|[0]68776399-68776449[2]|[0]68787443-68787536[0]|[1]68815886-68815945[0]|[1]68818239-68818246[2] atggcagatccaggaatgatgagtctttttggcgaggatgggaatattttcagtgaaggtcttgaaggcctcggagaatgtggttacccggaaaatccagtaaatcctatgggtcagcaaatgccaatagaccaaggctttgcctctttacagccatcccttcatcatccttcaactaatcaaaatcaaacaaagctgacacattttgatcactataatcagtatgaacaacaaaagatgcatctgatggatcagccgaacagaatgatgagcaacacccctgggaacggactcgcgtctccgcactcgcagtatcacacccctcccgttcctcaggtgccccatggtggcagtggtggcggtcagatgggtgtctaccctggcatgcagaatgagaggcatgggcaatcctttgtggacagcagctccatgtggggccccagggctgttcaggtaccagaccagatacgagccccctaccagcagcagcagccacagccgcagccaccgcagccggctccgtcggggccccctgcacagggccaccctcagcacatgcagcagatgggcagctatatggcacgtggggatttttccatgcagcagcatggtcagccacagcagaggatgagccagttttcccaaggccaagagggcctcaatcagggaaatccttttattgccacctcaggacctggccacttgtcccacgtgccccagcagagtcccagcatggcaccttccttgcgtcactcggtgcagcagttccatcaccacccctctactgctctccatggagaatccgttgcccacagtcccagattctccccgaatcctccccaacaaggggctgttaggccgcaaacccttaactttagttctcggagccagacagtcccctctcctactataaacaactcagggcagtattctcgatatccttacagtaacctaaatcagggattagttaacaatacagggatgaatcaaaatttaggccttacaaataatactccaatgaatcagtccgtaccaagataccccaatgctgtaggattcccatcaaacagtggtcaaggactaatgcaccagcagcccatccaccccagtggctcacttaaccaaatgaacacacaaactatgcatccttcacagcctcagggaacttatgcctctccacctcccatgtcacccatgaaagcaatgagtaatccagcaggcactcctcctccacaagtcaggccgggaagtgctgggataccaatggaagttggcagttatccaaatatgccccatcctcagccatctcaccagccccctggtgccatgggaatcggacagaggaatatgggccccagaaacatgcagcagtctcgtccatttataggcatgtcctcggcaccaagggaattgactgggcacatgaggccaaatggttgtcctggtgttggccttggagacccacaagcaatccaggaacgactgatacctggccaacaacatcctggtcaacagccatcttttcagcagttgccaacctgtcctccactgcagcctcacccgggcttgcaccaccagtcttcacctccacaccctcatcaccagccttgggcacagctccacccatcaccccagaacaccccgcagaaagtgcctgtgcatcagcattccccgtcggagccctttctagagaaaccagtgccggatatgactcaggttagtggaccgaatgctcagctagtgaagagtgatgattacctgccatcaatagaacagcagccacaacaaaagaagaagaaaaagaaaaacaaccacattgtagcagaggatcccagtaaaggttttggtaaagatgacttccctggtggggtagataaccaagaactaaataggaactcactggatgggtcccaagaagaaaaaaagaaaaagaaaaggtcaaaggcaaaaaaagacccgaaggaaccgaaagaacccaaggagaaaaaagagcccaaggaacccaagaccccgaaagcccctaagattcccaaagagccaaaggaaaagaaagcaaaaactgccacgccaaaacccaaatccagcaaaaagtcaagGAATTAATGACCAAGTTAATAACTGAGACACCTGACCAGCCAATCCCATTTCTCATTGACCATCTTCAGTCTAAACAAGGGAACCGTGGACAACTTCAAAGAACTTTGTCTGGATCTGCAGCTCTATGGGCAGAAAGTGAAAAATCAGAATCCAAAGGAACAAGAAGGGATTTCAGAAGCTATGATAAACCTTGGCAATTAAATGCAAAGAAGCCTAAAAAATCAAAAAGTGACCTTGCTGTGTCTAATATTTCTCCACCATCACCGGACTCCAAATCATTGCCAAGGTCAGTAGAGCATCCAAAGTGGAACTGGAGGACTAAACCACAAAGCCGTGATTTTGATGAATTGAATCACATCCTTCAGGAGAGCAAGAAGCTGGGGAAAGCCCTTGAGAATCTCTCTCGAAGTATTGCAATTTCAGATGAACTCGATAAGGAAACAGTGACATTTAATTCTTCTCTTCTGAGGCCCCGTGTGATTGGAGAATGGATTGGTAGAGAAGAAAATGATGCTGATCCCCTAGCTGCTGAAATGCTACAGCCTCCAATTCCAAGAAGCAAAAATGACCAATGGGAAAGTGAAGATAGTGGCTCTAGTCCTGCAGGAAGCTTAAAGATGGAGCCTAAGAACAAAGGATTAAAACAGCAGCAACAGCAACATAAGAAACTCCTGGCCGCAATGCTCTCTCAAGATTCTTTTGAGTCCATCCACAGCCCTACCCCATCTGTAACAGAAGAAGATATTGATAATGAAGATGATGCAATGGAATTGCTGGAGGATCTTAATGATTTAAGAATGGAGGGAGTAACAACCCTGGTACCTTCTGGGAGCAAATTTAACCAAGGCCGTCCTACTTACCCTGCTGAGCCTCAGGCCAAGGTCACACTGAACATCTGTTCAAGGTGTGCCAGGCTTCAAGGAGACAACCTGGAAGAAAGGACAGAAGAGTCACTACCAATACTCCATTCTCCAGATGAAAAAATCCCAGATTCATTCGATTCCTTGCCTGGGACTGAAGAAGCACTAATGGAGGAGGGTGACGAATTTGAGAAAGCATCTAAACTAACAGGACCTGGAGAAGCCTCCAGTGGAGTAGGACACTCACTGAAAAACTACATGGAAGAAGATGAATCCTTAAAGCAATTGCAGGTAGTTCATCAACCATGGATCTTGCCAAGTGACACAGAAAGTGAAGGAGTGGAAGCAGAACAAGAGAAACGTTCCGCTGATCTTCTTCTTTGCGTTCCATGCTCTTCTTGTCCTACGCTGGTCTACTCTGGTTTGTGA MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGGGQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQLHPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSRN**PS**LRHLTSQSHFSLTIFSLNKGTVDNFKELCLDLQLYGQKVKNQNPKEQEGISEAMINLGN*MQRSLKNQKVTLLCLIFLHHHRTPNHCQGQ*SIQSGTGGLNHKAVILMN*ITSFRRARSWGKPLRISLEVLQFQMNSIRKQ*HLILLF*GPV*LENGLVEKKMMLIP*LLKCYSLQFQEAKMTNGKVKIVALVLQEA*RWSLRTKD*NSSNSNIRNSWPQCSLKILLSPSTALPHL*QKKILIMKMMQWNCWRILMI*EWRE*QPWYLLGANLTKAVLLTLLSLRPRSH*TSVQGVPGFKETTWKKGQKSHYQYSILQMKKSQIHSIPCLGLKKH*WRRVTNLRKHLN*QDLEKPPVE*DTH*KTTWKKMNP*SNCR*FINHGSCQVTQKVKEWKQNKRNVPLIFFFAFHALLVLRWSTLVC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29199 RDM1P5::LRRC37A11P ENSG00000263818.5::ENSG00000290925.1 NUGC3 SRR8615450 SRR8670697 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 513 FALSE NA FALSE NA RDM1P5 ENSG00000263818.5 transcribed_processed_pseudogene + + chr17:39057019-39113190:+ chr17:39063546:+ chr17:37213272-37269443:+ chr17:37219799:+ LRRC37A11P ENSG00000290925.1 lncRNA + + chr17:39029906-39053215:+ chr17:39052865:+ chr17:37186159-37209468:+ chr17:37209118:+ chr17:39083139,chr17:39083137 chr17:39052510,chr17:39052505 NA NA chr17:37239392,chr17:37239390 chr17:37208763,chr17:37208758 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 3 8 2.18 ONLY_REF_SPLICE YES_LDAS 0.1023 GT 1.7819 AG 1.5301 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29206 TSEN15::TTC33 ENSG00000198860.14::ENSG00000113638.14 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 516 FALSE NA FALSE NA TSEN15 ENSG00000198860.14 protein_coding + + chr1:184051651-184123978:+ chr1:184054863:+ chr1:184020785-184093112:+ chr1:184023997:+ TTC33 ENSG00000113638.14 protein_coding - - chr5:40512333-40755963:- chr5:40613381:- chr5:40512435-40756065:- chr5:40613483:- chr1:184093609,chr1:184093603,chr1:184093601 chr5:40651473,chr5:40651479,chr5:40651481 NA NA chr1:184062743,chr1:184062737,chr1:184062735 chr5:40651575,chr5:40651581,chr5:40651583 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sen15|65-118|1.9e-11 none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr5] 10 12 10 11.28 ONLY_REF_SPLICE YES_LDAS 0.2419 GT 1.8323 AG 1.9329 ENST00000485209.6 1-353 ENST00000636106.1 222-288 chr1|+|[0]184051756-184051890[2]|[0]184054354-184054435[0]|[1]184054728-184054863[1]<==>chr5|-|[2]40613315-40613381[2] atggaggagcgcggcgattccgagccgacccccggctgcagcggcctgggtccgggcggtgttcgcggctttggcgacggcggtggagctccttcgtgggcccctgaggacgcctggatgggcactcaccctaagtatctagaaatgatggaattagatataggagatgccacccaagtttatgtagcgttcttggtttacctggacctcatggaaagcaaaagctggcatgaagtaaactgtgtaggattaccagaactccagctcatctgccttgttggtactgagatagaaggggaggggttacagactgtggtgcctacccccatcactgcttccctcagccataacagGGGTTCTCCACACTGGCTGAACACCAGAATCAACTGGGAGAATTTTCTTGAAAACACTAACGCCTAG MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQVYVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRGSPHWLNTRINWENFLENTNA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29211 ELP2::MOCOS ENSG00000134759.14::ENSG00000075643.6 HCC70 SRR8615452 SRR8639165 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 518 FALSE NA FALSE NA ELP2 ENSG00000134759.14 protein_coding + + chr18:36129444-36180557:+ chr18:36146381:+ chr18:33709407-33760520:+ chr18:33726344:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36248922:+ chr18:33767460-33852120:+ chr18:33828885:+ chr18:36147411,chr18:36147515,chr18:36147407,chr18:36147514 chr18:36231547,chr18:36231817,chr18:36231540,chr18:36231813 NA NA chr18:33727374,chr18:33727478,chr18:33727370,chr18:33727477 chr18:33811510,chr18:33811780,chr18:33811503,chr18:33811776 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|18-44|2.5^ANAPC4_WD40|31-100|0.014^eIF2A|37-73|0.47^WD40|51-90|1.9e-06^WD40|103-143|0.00018^Lar_restr_allev|133-144|3^Lar_restr_allev|203-215|1.3^WD40|221-255|0.087^ANAPC4_WD40|243-304|0.037^eIF2A|261-304|2.3^WD40|264-301|7.9e-08^WD40|341-384|2.1e-06^ANAPC4_WD40|351-359|2.7^WD40|403-423|0.17^WD40|444-480|4.7e-07^ANAPC4_WD40|456-480|0.011^eIF2A|456-475|0.042^WD40|516-529|1.4^WD40|624-651|0.00028^Lar_restr_allev|628-666|2.5e-05^eIF2A|661-697|0.15^ANAPC4_WD40|665-705|0.00067^WD40|669-706|1.1e-08^eIF2A|727-753|0.00083^WD40|732-761|1.3e-10^ANAPC4_WD40|736-758|1.3^WD40|787-816|0.18^ANAPC4_WD40|837-854|0.074^WD40|869-883|0.0027 none ["ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.01Mb];NEIGHBORS[6963] 3 6 3 6 ONLY_REF_SPLICE YES_LDAS 0.1023 GT 1.7465 AG 1.8892 ENST00000442325.6 1-1320 ENST00000261326.6 1961-2667 chr18|+|[0]36129934-36130071[2]|[0]36133238-36133316[0]|[1]36136307-36136377[2]|[0]36138270-36138426[0]|[1]36138795-36138872[0]|[1]36139419-36139613[0]|[1]36141137-36141201[2]|[0]36142281-36142347[0]|[1]36142826-36142966[0]|[1]36144939-36145034[0]|[1]36145948-36146048[2]|[0]36146250-36146381[2]<==>chr18|+|[1]36248922-36249000[1]|[2]36251159-36251283[0]|[1]36256968-36257073[1]|[2]36260037-36260175[2]|[0]36266749-36266853[2]|[0]36268533-36268685[2] atggtggcacccgtgctggagacttctcacgtgttttgctgcccaaaccgggtgcggggagtcctgaactggagctctgggcccagaggacttctggcctttggcacgtcctgctccgtggtgctctatgaccccctgaaaagggttgttgttaccaacttgaatggtcacaccgcccgagtcaattgcatacagtggatttgtaaacaggatggctccccttctactgaattagtttctggaggatctgataatcaagtgattcactgggaaatagaggataatcagcttttaaaagcagtgcatcttcaaggccatgaaggacctgtttatgcggtgcatgctgtttaccagaggaggacatcagatcctgcattatgtacactgatcgtttctgcagctgcagattctgctgttcgactctggtctaaaaagggtccagaagtaatgtgccttcagactttaaactttggaaatggatttgctttggctctctgcttatcttttttgccaaatactgatgttacctggaagactggccaggtggaacgaggcagggcctggaagccaccagcctctctcgccctctgtagcaggagctgcgactctatggtttcatgttacgcttccattctgtgcaaggctctgtggaaggagaagctgcacacattctggcatcataacagaatttcatttcttccatctgcattcaggccaataccaatattagcatgtggcaatgatgattgcagaattcacatatttgctcaacaaaatgatcagtttcagaaagtgctttctctctgtggacatgaggattggattagaggagtggaatgggcagcctttggtagagatcttttcctagcaagctgttcacaagattgcctgataagaatatggaagctgtatataaagtcaacatctttagaaactcaggatgacgataacataagactgaaagaaaatacttttaccatagaaaatgaaagtgttaaaatagcatttgctgttactctggagacagtgctagccggtcatgaaaactgggtaaatgcagttcactggcaacctgtgttttacaaagatggtgtcctacagcagccagtgagattattatctgcttccatggataaaaccatgattctctgggctccagatgaagagtcaggagtttggctagaacaggttcgagtaggtgaagtaggtgggaatactttgggattttatgattgccagttcaatgaagatggctccatgatcattgctcatgctttccacggagcgttgcacctttggaaacagaatacagttaacccaGGATGGAGCCTATAGAGGTGCCTCTTGAGGAAAATAGTGAACGGACTCAGATTCGCCAAAGCAGGGTCTGTGCTGACAGAGTAAGTACTTATGATTGTGGAGAAAAAATTTCAAGCTGGTTGTCAACATTTTTTGGCCGTCCTTGTCATTTGATCAAACAAAGTTCAAACTCTCAAAGGAATGCAAAGAAGAAACATGGAAAAGATCAACTTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTATTTTGGAACTTCACCGGCAACTAAACACCAGTGATGAGAATGGAAAGGAGGAATTATTCTCACTGAAGGATCTCAGCTTGCGTTTTCGTGCCAATATTATTATCAATGGAAAAAGGGCTTTTGAAGAAGAGAAATGGGATGAGATTTCAATTGGCTCTTTGCGTTTCCAGGTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGACCAGCAAACTGGGCAACGAAACCAGCATGTTTTCCAAAAACTTTCTGAGAGTCGTGAAACAAAGGTGAACTTTGGCATGTACCTGATGCATGCATCATTGGATTTATCCTCCCCATGTTTCCTGTCTGTAGGATCTCAGGTGCTCCCTGTGTTGAAAGAGAATGTGGAAGGTCATGATTTACCTGCATCTGAGAAACACCAGGATGTTACCTCCTAA MVAPVLETSHVFCCPNRVRGVLNWSSGPRGLLAFGTSCSVVLYDPLKRVVVTNLNGHTARVNCIQWICKQDGSPSTELVSGGSDNQVIHWEIEDNQLLKAVHLQGHEGPVYAVHAVYQRRTSDPALCTLIVSAAADSAVRLWSKKGPEVMCLQTLNFGNGFALALCLSFLPNTDVTWKTGQVERGRAWKPPASLALCSRSCDSMVSCYASILCKALWKEKLHTFWHHNRISFLPSAFRPIPILACGNDDCRIHIFAQQNDQFQKVLSLCGHEDWIRGVEWAAFGRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNIRLKENTFTIENESVKIAFAVTLETVLAGHENWVNAVHWQPVFYKDGVLQQPVRLLSASMDKTMILWAPDEESGVWLEQVRVGEVGGNTLGFYDCQFNEDGSMIIAHAFHGALHLWKQNTVNPGWSL*RCLLRKIVNGLRFAKAGSVLTE*VLMIVEKKFQAGCQHFLAVLVI*SNKVQTLKGMQRRNMEKINFLVQWPPFLW*MRHSIC*STHPVFWNFTGN*TPVMRMERRNYSH*RISACVFVPILLSMEKGLLKKRNGMRFQLALCVSRFWGLVTDAR*FASTSKLGNETSMFSKNFLRVVKQR*TLACT*CMHHWIYPPHVSCL*DLRCSLC*KRMWKVMIYLHLRNTRMLPP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29212 ASAP1::RNF111 ENSG00000153317.15::ENSG00000157450.16 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 519 FALSE NA FALSE NA ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130401885:- chr8:131064350-131455920:- chr8:131414131:- RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59066764:+ chr15:59157374-59389618:+ chr15:59358963:+ chr8:130393181,chr8:130393174,chr8:130393155,chr8:130393134 chr15:59060319,chr15:59060319,chr15:59060319,chr15:59060319 NA NA chr8:131405427,chr8:131405420,chr8:131405401,chr8:131405380 chr15:59352518,chr15:59352518,chr15:59352518,chr15:59352518 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr15] 95 69 95 69 ONLY_REF_SPLICE YES_LDAS 2.0666 GT 1.9656 AG 1.7968 ENST00000521075.5 1-59 ENST00000561186.5 1367-3012 chr8|-|[1]130401885-130401943[0]<==>chr15|+|[1]59066764-59067083[2]|[0]59075954-59076215[0]|[1]59080936-59081284[1]|[2]59084102-59084254[1]|[2]59085659-59085785[2]|[0]59089667-59089759[2]|[0]59091059-59091154[2]|[0]59092513-59092640[1]|[2]59094783-59094900[2] atgagatcttcagcctccaggctctccagtttttcgtcgagagattcactatggaatcgATGACTCAAGGAGAACTACATCTAGTGCTGTAACGGAAACTGGCCCTCCTGCAATGCCAAGGTTACCTTCCTGCTGTCCCCAGCACTCACCATGTGGAGGGTCGTCACAGAACCACCATGCATTAGGACATCCTCATACAAGTTGCTTTCAGCAGCATGGTCACCATTTTCAACATCATCACCACCACCACCATACTCCCCACCCAGCTGTCCCAGTTTCTCCTTCCTTTAGTGATCCTGCTTGCCCTGTGGAAAGACCTCCACAAGTACAAGCACCTTGTGGAGCAAATAGTAGTTCTGGTACCAGCTATCATGAACAGCAGGCATTGCCAGTGGACCTGAGCAACAGTGGTATCAGAAGTCATGGAAGTGGCAGTTTTCATGGAGCATCTGCATTTGACCCCTGCTGCCCTGTTTCTTCCTCCCGAGCTGCAATCTTTGGCCATCAGGCCGCTGCTGCTGCCCCAAGTCAACCTTTATCATCAATAGATGGCTATGGATCAAGCATGGTTGCGCAGCCCCAGCCCCAGCCCCCTCCACAGCCCTCTCTCTCATCATGTCGACATTACATGCCACCCCCTTATGCCTCTTTGACAAGGCCACTTCATCATCAAGCTTCTGCCTGCCCGCATTCTCATGGAAACCCCCCTCCTCAGACTCAGCCTCCGCCTCAAGTGGATTATGTTATTCCTCATCCTGTACATGCTTTCCATTCTCAAATATCTTCTCATGCAACATCTCATCCTGTGGCACCCCCACCACCAACTCACTTAGCCAGTACAGCTGCACCAATCCCTCAGCATCTTCCTCCTACACACCAGCCAATTTCGCACCATATTCCAGCCACAGCACCTCCAGCACAGAGACTGCATCCTCATGAAGTGATGCAGAGGATGGAAGTTCAAAGGAGGAGGATGATGCAGCATCCAACTGGTCTTTTTGTGTTCTGTGTTTCCAGGCGGGCACATGAACGCCCCCCACCCCATCCACATAGGATGCACCCAAACTATGGTCATGGGCATCATATTCATGTGCCTCAGACTATGTCCTCACATCCTCGACAGGCTCCAGAGAGGTCTGCCTGGGAACTGGGAATTGAAGCTGGAGTGACTGCAGCTACTTATACACCTGGTGCATTGCATCCTCACTTGGCCCATTATCACGCACCTCCTCGACTTCATCACTTACAATTAGGAGCTCTTCCTTTAATGGTTCCTGATATGGCAGGCTATCCTCACATCCGTTACATTTCATCAGGATTGGATGGAACATCATTCAGAGGTCCTTTCAGGGGCAATTTTGAGGAACTGATTCATTTGGAAGAAAGATTAGGCAATGTCAATCGTGGAGCATCCCAGGGGACAATTGAAAGATGTACATATCCACATAAATACAAAAAGGTAACAACTGATTGGTTCTCACAGAGGAAACTGCACTGCAAACAAGATGGGGAAGAAGGGACTGAGGAAGACACAGAGGAAAAATGTACTATCTGTTTGTCTATTTTAGAGGAAGGTGAAGATGTGAGACGTCTTCCATGTATGCACCTTTTCCACCAAGTGTGTGTTGACCAATGGTTGATTACCAATAAGAAGTGCCCCATATGCAGAGTGGACATTGAGGCCCAGCTGCCAAGTGAAAGTTGA MRSSASRLSSFSSRDSLWNR*LKENYI*CCNGNWPSCNAKVTFLLSPALTMWRVVTEPPCIRTSSYKLLSAAWSPFSTSSPPPPYSPPSCPSFSFL**SCLPCGKTSTSTSTLWSK**FWYQLS*TAGIASGPEQQWYQKSWKWQFSWSICI*PLLPCFFLPSCNLWPSGRCCCPKSTFIINRWLWIKHGCAAPAPAPSTALSLIMSTLHATPLCLFDKATSSSSFCLPAFSWKPPSSDSASASSGLCYSSSCTCFPFSNIFSCNISSCGTPTTNSLSQYSCTNPSASSSYTPANFAPYSSHSTSSTETASS*SDAEDGSSKEEDDAASNWSFCVLCFQAGT*TPPTPST*DAPKLWSWASYSCASDYVLTSSTGSREVCLGTGN*SWSDCSYLYTWCIASSLGPLSRTSSTSSLTIRSSSFNGS*YGRLSSHPLHFIRIGWNIIQRSFQGQF*GTDSFGRKIRQCQSWSIPGDN*KMYIST*IQKGNN*LVLTEETALQTRWGRRD*GRHRGKMYYLFVYFRGR*RCETSSMYAPFPPSVC*PMVDYQ*EVPHMQSGH*GPAAK*KL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29213 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85496166:- chr1:85947964-86043933:- chr1:85961849:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 37 65 37 62.96 ONLY_REF_SPLICE YES_LDAS 1.2597 GT 1.5628 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29214 BRWD3::POF1B ENSG00000165288.11::ENSG00000124429.18 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 520 FALSE NA FALSE NA BRWD3 ENSG00000165288.11 protein_coding - - chrX:80669503-80809877:- chrX:80808539:- chrX:79925002-80065376:- chrX:80064038:- POF1B ENSG00000124429.18 protein_coding - - chrX:85277396-85379717:- chrX:85282317:- chrX:84532402-84634722:- chrX:84537323:- chrX:80799268,chrX:80800187,chrX:80799277 chrX:85316311,chrX:85294562,chrX:85316312 NA NA chrX:80054767,chrX:80055686,chrX:80054776 chrX:84571317,chrX:84549568,chrX:84571318 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NBCH_WD40-PARTIAL|147-180~|0.0017^WD40-PARTIAL|176-180~|9.8e-11 none ["BRWD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:4.47Mb] 28 7 28 7 ONLY_REF_SPLICE YES_LDAS 0.441 GT 1.9656 AG 1.8295 ENST00000373275.5 1-180 ENST00000373145.3 1650-1788 chrX|-|[2]80808539-80808598[0]|[2]80809013-80809042[0]|[2]80809246-80809304[1]|[0]80809441-80809471[0]<==>chrX|-|[2]85282179-85282317[2] atggcggcagcacctacccagatcgaagccgagctgtattacctgatcgctaggttcttgcagtctggaccctgcaacaaatccgctcaggtgctagtgcaggagctcgaggagcatcagctgattccgcgccgcttagattgggaggggaaagagcaccgaagaagcttcgaggatctgGTACAGGACACAATATCCAATCCTAGGCCTCCTATATGATGACTACGAATATATACCACCAGGTAGTGAAACACAGACTATTGTGATTGAGAAAACAGAAGACAAATACACTTGTGTAAGTTCACTTGGGCATTTTTAG MAAAPTQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVQDTISNPRPPI**LRIYTTR**NTDYCD*ENRRQIHLCKFTWAFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29219 HACD2::STK3 ENSG00000206527.10::ENSG00000104375.17 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 525 FALSE NA FALSE NA HACD2 ENSG00000206527.10 protein_coding - - chr3:123490820-123585053:- chr3:123567762:- chr3:123209667-123303900:- chr3:123286609:- STK3 ENSG00000104375.17 protein_coding - - chr8:98371228-98942827:- chr8:98774819:- chr8:99383456-99955055:- chr8:99787047:- chr3:123561142 chr8:98872062 NA NA chr3:123279989 chr8:99884290 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PTPLA|85-245|5.5e-65 Pkinase-PARTIAL|~111-306|2.4e-75^PK_Tyr_Ser-Thr-PARTIAL|~111-302|1.1e-55^Abi_2-PARTIAL|~111-165|3.5e-05^ABC1|124-203|1.5e-09^Pkinase_fungal|152-232|5.8e-09^Pkinase_fungal|355-355|1.1^Fib_succ_major|402-472|1.8e-05^Abi_2|426-439|3.5^Mst1_SARAH|465-512|2.7e-29 none 7 2 7 2 ONLY_REF_SPLICE NO_LDAS 0.1134 GT 1.8892 AG 1.5546 ENST00000383657.10 1-292 ENST00000523601.5 111-1560 chr3|-|[0]123567762-123567780[0]|[2]123582212-123582329[2]|[1]123584873-123585027[0]<==>chr8|-|[2]98455842-98456000[0]|[2]98526742-98526917[1]|[0]98547969-98548161[0]|[2]98579664-98579789[0]|[2]98596032-98596169[0]|[2]98706467-98706634[0]|[2]98707147-98707311[0]|[2]98749276-98749390[2]|[1]98767243-98767371[2]|[1]98774739-98774819[2] atggcggcagtggcggcgactgcagcagcgaaggggaatgggggcggcggtggcagggccggggccggggacgccagcggcacgcggaagaagaagggcccggggcccctggccacggcgtacctggtcatctacaatgtggtgatgacagccgggtggctggttatagcggttggtctggtccgagcatacctggctaagggtagctaccatagcctttattattcaattgaaaagcctttgaaattctttcaaactggagccttattggagattttacattgtgctatagTAAACTAAAAAAGCTGAGTGAAGACAGTTTGACTAAGCAGCCTGAAGAAGTTTTTGATGTATTAGAGAAGCTTGGAGAAGGGTCTTATGGAAGTGTATTTAAAGCAATACACAAGGAATCCGGTCAAGTTGTCGCAATTAAACAAGTACCTGTTGAATCAGATCTTCAGGAAATAATCAAAGAAATTTCCATAATGCAGCAATGTGACAGCCCATATGTTGTAAAGTACTATGGCAGTTATTTTAAGAATACAGACCTCTGGATTGTTATGGAGTACTGTGGCGCTGGCTCTGTCTCAGACATAATTAGATTACGAAACAAGACATTAATAGAAGATGAAATTGCAACCATTCTTAAATCTACATTGAAAGGACTAGAATATTTGCACTTTATGAGAAAAATACACAGAGATATAAAAGCTGGAAATATTCTCCTCAATACAGAAGGACATGCAAAATTGGCAGATTTTGGAGTGGCTGGTCAGTTAACAGATACAATGGCAAAACGCAATACTGTAATAGGAACTCCATTTTGGATGGCTCCTGAGGTGATTCAAGAAATAGGCTATAACTGTGTGGCCGACATCTGGTCCCTTGGCATTACTTCTATAGAAATGGCTGAAGGAAAACCTCCTTATGCTGATATACATCCAATGAGGGCTATTTTTATGATTCCCACAAATCCACCACCAACATTCAGAAAGCCAGAACTTTGGTCCGATGATTTCACCGATTTTGTTAAAAAGTGTTTGGTGAAGAATCCTGAGCAGAGAGCTACTGCAACACAACTTTTACAGCATCCTTTTATCAAGAATGCCAAACCTGTATCAATATTAAGAGACCTGATCACAGAAGCTATGGAGATCAAAGCTAAAAGACATGAGGAACAGCAACGAGAATTGGAAGAGGAAGAAGAAAATTCGGATGAAGATGAGCTGGATTCCCACACCATGGTGAAGACTAGTGTGGAGAGTGTGGGCACCATGCGGGCCACAAGCACGATGAGTGAAGGGGCCCAGACCATGATTGAACATAATAGCACGATGTTGGAATCCGACTTGGGGACCATGGTGATAAACAGTGAGGATGAGGAAGAAGAAGATGGAACTATGAAAAGAAATGCAACCTCACCACAAGTACAAAGACCATCTTTCATGGACTACTTTGATAAGCAAGACTTCAAGAATAAGAGTCACGAAAACTGTAATCAGAACATGCATGAACCCTTCCCTATGTCCAAAAACGTTTTTCCTGATAACTGGAAAGTTCCTCAAGATGGAGACTTTGACTTTTTGAAAAATCTAAGTTTAGAAGAACTACAGATGCGGTTAAAAGCACTGGACCCCATGATGGAACGGGAGATAGAAGAACTTCGTCAGAGATACACTGCGAAAAGACAGCCCATTCTGGATGCGATGGATGCAAAGAAAAGAAGGCAGCAAAACTTTTGA MAAVAATAAAKGNGGGGGRAGAGDASGTRKKKGPGPLATAYLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIVN*KS*VKTV*LSSLKKFLMY*RSLEKGLMEVYLKQYTRNPVKLSQLNKYLLNQIFRK*SKKFP*CSNVTAHML*STMAVILRIQTSGLLWSTVALALSQT*LDYETRH**KMKLQPFLNLH*KD*NICTL*EKYTEI*KLEIFSSIQKDMQNWQILEWLVS*QIQWQNAIL**ELHFGWLLR*FKK*AITVWPTSGPLALLL*KWLKENLLMLIYIQ*GLFL*FPQIHHQHSESQNFGPMISPILLKSVW*RILSRELLQHNFYSILLSRMPNLYQY*ET*SQKLWRSKLKDMRNSNENWKRKKKIRMKMSWIPTPW*RLVWRVWAPCGPQAR*VKGPRP*LNIIARCWNPTWGPW**TVRMRKKKMEL*KEMQPHHKYKDHLSWTTLISKTSRIRVTKTVIRTCMNPSLCPKTFFLITGKFLKMETLTF*KI*V*KNYRCG*KHWTP*WNGR*KNFVRDTLRKDSPFWMRWMQRKEGSKTF FALSE FALSE NA NA TRUE hsa-mir-9903 chr8:98393645-98393738:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase 3 STE STE20 MST Q13188 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29220 SMURF2::KPNA2P3 ENSG00000108854.16::ENSG00000266820.1 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SMURF2 ENSG00000108854.16 protein_coding - - chr17:64542282-64662307:- chr17:64571798:- chr17:62538400-62658425:- chr17:62567916:- KPNA2P3 ENSG00000266820.1 transcribed_unprocessed_pseudogene - - chr17:64749918-64758603:- chr17:64754654:- chr17:62746036-62754721:- chr17:62750772:- chr17:64570354 chr17:64757163 NA NA chr17:62566472 chr17:62753281 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 5 4 5 4 ONLY_REF_SPLICE YES_LDAS 0.1134 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29221 POLR1A::AFF3 ENSG00000068654.17::ENSG00000144218.21 HCC44 SRR8615456 SRR8639166 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 522 FALSE NA FALSE NA POLR1A ENSG00000068654.17 protein_coding - - chr2:86020216-86106155:- chr2:86048884:- chr2:86247339-86333278:- chr2:86276007:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99594289:- chr2:100161881-100808890:- chr2:100210751:- chr2:86047686,chr2:86047688 chr2:99600546,chr2:99600549 NA NA chr2:86274809,chr2:86274811 chr2:100217008,chr2:100217011 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RNA_pol_Rpb1_1|11-355|1.4e-23^NOA36|103-217|0.055^RNA_pol_Rpb1_3|162-199|3.5^RNA_pol_Rpb1_1|388-430|0.0046^RNA_pol_Rpb1_2|434-613|1.1e-70^RNA_pol_Rpb1_3|617-802|5.4e-41^RNA_pol_Rpb1_4|841-951|5.1e-25^RNA_pol_Rpb1_5|958-1606|3.2e-99^RNA_pol_Rpb1_1|1279-1359|2.8^SURF2|1335-1466|0.0019^RNA_pol_3_Rpc31|1336-1444|0.0024^NOA36|1354-1450|0.00036^eIF-3c_N|1359-1476|0.00052^Presenilin|1365-1472|0.0069^RNA_pol_Rpb1_3|1544-1562|0.91 none ["AFF3:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:13.44Mb] 5 12 5 12 ONLY_REF_SPLICE YES_LDAS 0.2142 GT 1.6729 AG 1.8892 ENST00000409681.1 1-2634 ENST00000409579.5 1447-3756 chr2|-|[2]86048884-86049042[0]|[2]86049160-86049242[1]|[0]86052817-86053000[0]|[2]86054140-86054289[0]|[2]86065274-86065465[0]|[2]86070018-86070272[0]|[2]86075030-86075260[0]|[2]86077859-86077981[0]|[2]86078114-86078284[0]|[2]86080816-86080978[2]|[1]86081601-86081706[1]|[0]86083082-86083168[1]|[0]86088566-86088669[2]|[1]86088785-86088870[0]|[2]86089822-86089929[0]|[2]86098611-86098760[0]|[2]86099968-86100172[2]|[1]86105700-86105776[0]<==>chr2|-|[2]99551474-99551595[1]|[0]99554311-99554534[2]|[1]99554683-99554732[0]|[2]99558875-99558968[2]|[1]99560365-99560436[2]|[1]99565487-99565623[0]|[2]99568852-99568915[2]|[1]99578327-99578451[0]|[2]99582798-99582999[2]|[1]99587154-99587278[0]|[2]99593195-99594289[0] atgttgatctccaagaacatgccctggcggcggctgcagggcatttccttcgggatgtattcggctgaagagctcaagaaattaagtgttaaatccattacgaaccctcgatacctggacagcctggggaacccatcggcaaacggcctgtacgatttagctttgggccctgcagattccaaagaggtgtgctccacctgcgtgcaggacttcagcaactgttctgggcacctgggccacattgagctcccactcacagtgtataaccctctcctcttcgataagctgtacctgctgcttcggggctcttgtttaaactgccacatgctgacttgtccccgggccgtgattcacctcttactctgccagctgagggttctggaagtcggggccctacaagcagtctacgagcttgagagaattctgaacaggtttctggaagaaaatcccgatccctctgcctctgaaattcgggaggaattagaacaatacacaactgaaattgtgcagaacaacctcctggggtcccagggcgcacatgtaaagaacgtgtgtgagagcaagagcaagctcattgctctcttctggaaggcacatatgaatgctaagcgctgtccccactgcaagaccgggcgatccgttgtccgaaaggaacacaacagcaagttgactatcacgtttccagccatggtgcacaggacagctggccagaaggactctgagcccctgggaattgaggaagctcagataggaaaacgaggatacttaacacccaccagtgcccgcgaacacctttctgccctgtggaagaatgaaggattctttctgaactaccttttttcgggaatggatgatgatggtatggaatccagattcaatcccagtgtgttctttctagatttcttggtggtgccgccctcaaggtatcgcccagtcagtcgcctaggagaccagatgtttactaatggccagacggtgaacttgcaggctgtcatgaaggatgtagttctgattcgaaaacttctggcattgatggcccaagaacagaagttgccagaggaagtggccacacccactacagatgaggaaaaagactctttgattgctattgaccgatcctttttgagtacacttccaggccagtccctcatagacaaactttacaacatttggattcgccttcagagccacgtcaatattgtgtttgatagcgagatggacaaactaatgatggacaagtacccaggcattaggcagatcctggagaagaaagaaggcctgttccgaaaacacatgatgggaaagcgagtggactacgctgcgcgctcagtcatctgcccagacatgtacatcaacaccaacgaaattggaattcccatggtgtttgccacaaaactgacctacccacagccagttaccccatggaatgttcaggaacttaggcaagcggtcatcaacggccctaatgtgcacccaggagcctccatggtcatcaatgaggacggcagccgcacagccctgagcgctgtggacatgacccagcgagaggccgtggccaagcagcttctgaccccagccacgggggcacctaagccccaggggacaaaaattgtgtgccggcatgtgaagaatggggacattctgctactgaaccgacagcccacactgcacagaccctccatccaggcccaccgtgcccgcatcctgcctgaagagaaagtgctgcggctccactatgccaactgcaaggcctataatgccgactttgatggagacgagatgaatgcccatttcccccagagtgagctgggccgggccgaggcctacgtcctggcctgcactgatcagcagtaccttgttcccaaggatggccaaccattggcgggactgatccaggatcacatggtttcaggggcaagcatgactactcggggttgctttttcacccgggagcactatatggagctggtgtaccgaggactcacggacaaagtggggcgcgtgaagctcctttctccttccatcctgaagccctttccgctgtggacaggaaaacaggttgtgtcaacgctgctcataaatataatcccagaggaccacatcccactgaacttatctggaaaggcgaaaatcactgggaaagcctgggtgaaggaaactcctcgatccgttcctggctttaaccctgactcgatgtgcgagtcccaggtgatcatcagggaaggggagctgctctgcggagtgctggacaaggcgcactatgggagctccgcctacggcctggtccactgctgctatgagatctatggaggcgagaccagcggcaaggttctaacctgcctggcccgcctcttcaccgcctacctgcagctctacagaggcttcaccttgggcgtggaagacattttggtgaagccaaaggcagatgtcaagaggcaacgtatcattgaagaatccacccactgcgggccccaggctgtcagggctgcattaaacctgccagaagccgcatcatatgatgaggtccgaggaaaatggcaggatgcccatctgggcaaggaccagagggattttaacatgattgatctgaagttcaaggaggaagtgaaccattacagcaatgagattaacaagGCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTGATCCAAAATGAAAGCCACGGGTCAGAGAGCAATCAGTACTACAACCCGGTGAAAGAGGACGTCCAGGACTGTGGGAAAGTCCCCGACGTTTGCCAGCCCAGCCTGAGAGAGAAGGAGATCAAGAGCACTTGCAAGGAGGAGCAAAGGCCAAGGACAGCCAACAAGGCCCCTGGGAGTAAAGGCGTGAAGCAGAAGTCCCCGCCCGCGGCCGTGGCCGTGGCGGTGAGCGCAGCCGCCCCGCCACCCGCAGTGCCCTGTGCGCCCGCGGAGAACGCGCCCGCGCCTGCCCGGAGGTCCGCGGGCAAGAAGCCCACCAGGCGCACCGAGAGGACCTCAGCCGGGGACGGCGCCAACTGCCACCGGCCCGAGGAGCCCGCGGCCGCGGACGCGCTGGGGACGAGCGTGGTGGTCCCCCCGGAGCCCACCAAAACCAGGCCCTGTGGCAACAACAGAGCGAGCCACCGCAAGGAGCTGCGCTCCTCCGTGACCTGCGAGAAGCGCCGCACGCGGGGGCTAAGCAGGATCGTCCCCAAATCCAAGGAGTTCATTGAGACAGAGTCGTCATCTTCATCCTCCTCCTCGGACTCCGACCTGGAGTCCGAGCAGGAGGAGTACCCTCTGTCCAAAGCACAGACCGTGGCTGCCTCTGCCTCCTCCGGGAATGATCAGAGGCTGAAGGAGGCCGCTGCCAACGGGGGCAGTGGTCCTAGGGCCCCTGTAGGCTCCATCAACGCCAGGACCACCAGTGACATCGCCAAGGAGCTGGAGGAGCAGTTCTACACACTGGTCCCCTTTGGCCGGAACGAACTTCTCTCCCCTCTAAAGGACAGTGATGAGATCAGGTCTCTCTGGGTCAAAATCGACCTGACCCTCCTGTCCAGGATCCCAGAACACCTGCCCCAGGAGCCAGGGGTATTGAGCGCCCCTGCCACCAAGGACTCTGAGAGCGCACCGCCCAGCCACACCTCGGACACACCTGCAGAAAAGGCTTTGCCAAAATCCAAGAGGAAACGCAAGTGTGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCACTGCAACATGAACATCAACAGTGTGGCAATACCAATAAATAAAAATGAAAAAATGCTTCGGTCGCCCATCTCACCCCTCTCTGATGCATCTAAACACAAATACACCAGCGAGGACTTAACTTCTTCCAGCCGACCTAATGGCAACAGTTTGTTTACTTCAGCCTCTTCCAGCAAAAAGCCTAAGGCCGACAGCCAGCTGCAGCCTCACGGCGGAGACCTCACGAAAGCAGCTCACAACAATTCTGAAAACATTCCCCTCCACAAGTCACGGCCGCAGACGAAGCCGTGGTCTCCAGGCTCCAACGGCCACAGGGACTGCAAGAGGCAGAAACTTGTCTTCGATGATATGCCTCGCAGTGCCGATTATTTTATGCAAGAAGCTAAACGAATGAAGCATAAAGCAGATGCAATGGTGGAAAAGTTTGGAAAGGCTTTGAACTATGCTGAAGCAGCATTGTCGTTTATCGAGTGTGGAAATGCAATGGAACAAGGCCCCATGGAATCCAAATCTCCTTATACGATGTATTCAGAAACAGTAGAGCTCATCAGGTATGCTATGAGACTAAAAACCCACTCAGGCCCCAATGCCACACCAGAAGACAAACAACTGGCTGCATTATGTTACCGATGCCTGGCCCTCCTGTACTGGCGGATGTTTCGACTCAAAAGGGACCACGCTGTAAAGTATTCAAAAGCACTAATCGACTATTTCAAGAACTCATCTAAAGCCGCCCAAGCCCCATCTCCGTGGGGGGCCAGTGGAAAGAGCACTGGAACCCCATCCCCCATGTCTCCCAACCCCTCTCCCGCCAGCTCCGTGGGGTCTCAGGGCAGCCTCTCCAACGCCAGCGCCCTGTCCCCGTCGACCATCGTCAGCATCCCACAGCGCATCCACCAGATGGCGGCCAACCACGTCAGCATCACCAACAGCATCCTGCACAGCTACGACTACTGGGAGATGGCCGACAACCTGGCCAAGGAAAACCGAGAATTCTTCAACGACCTGGATCTGCTCATGGGGCCGGTCACCCTGCACAGCAGCATGGAGCACCTGGTCCAGTACTCCCAACAGGGCCTGCACTGGCTGCGGAACAGCGCCCACCTGTCATAG MLISKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILNRFLEENPDPSASEIREELEQYTTEIVQNNLLGSQGAHVKNVCESKSKLIALFWKAHMNAKRCPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDSEPLGIEEAQIGKRGYLTPTSAREHLSALWKNEGFFLNYLFSGMDDDGMESRFNPSVFFLDFLVVPPSRYRPVSRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQKLPEEVATPTTDEEKDSLIAIDRSFLSTLPGQSLIDKLYNIWIRLQSHVNIVFDSEMDKLMMDKYPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCGKVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPAVPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEPAAADALGTSVVVPPEPTKTRPCGNNRASHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLESEQEEYPLSKAQTVAASASSGNDQRLKEAAANGGSGPRAPVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEIRSLWVKIDLTLLSRIPEHLPQEPGVLSAPATKDSESAPPSHTSDTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSANHCNMNINSVAIPINKNEKMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSSKKPKADSQLQPHGGDLTKAAHNNSENIPLHKSRPQTKPWSPGSNGHRDCKRQKLVFDDMPRSADYFMQEAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPSPASSVGSQGSLSNASALSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSSMEHLVQYSQQGLHWLRNSAHLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 29226 PRMT1::BCL2L12 ENSG00000126457.22::ENSG00000126453.11 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 526 FALSE NA FALSE NA PRMT1 ENSG00000126457.22 protein_coding + + chr19:49675786-49689029:+ chr19:49682259:+ chr19:50179043-50192286:+ chr19:50185516:+ BCL2L12 ENSG00000126453.11 protein_coding + + chr19:49665142-49673916:+ chr19:49673698:+ chr19:50168399-50177173:+ chr19:50176955:+ chr19:49682774,chr19:49682774 chr19:49671841,chr19:49671838 NA NA chr19:50186031,chr19:50186031 chr19:50175098,chr19:50175095 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Methyltransf_11|52-66|7^PRMT5|87-174|1.3e-06^DOT1|87-138|1.8e-06^CMAS|90-166|2e-06^Methyltransf_16|92-183|1.8e-05^Cons_hypoth95|93-142|0.00029^Methyltransf_9|94-194|8.5e-08^Methyltransf_23|95-147|2.1e-07^FtsJ|95-137|2.5e-06^PCMT|95-150|1.2e-05^PrmA|97-171|4.9e-11^Methyltransf_31|97-171|8e-10^MTS|97-170|2.4e-08^Met_10|97-176|9.3e-08^GidB|97-195|6.6e-05^Methyltransf_4|98-146|0.00019^Methyltransf_25|101-198|3.8e-12^Methyltransf_11|102-200|1.8e-10^Methyltransf_12|102-199|6.4e-06^Methyltransf_24|105-200|0.0002 none ["BCL2L12:Oncogene"];["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.00Mb];LOCAL_REARRANGEMENT:+:[1870] 386 142 386 142 ONLY_REF_SPLICE YES_LDAS 5.463 GT 1.8892 AG 1.8892 ENST00000524771.5 1-441 ENST00000698556.1 335-414 chr19|+|[1]49677294-49677358[2]|[0]49679872-49679925[2]|[0]49680487-49680588[2]|[0]49681910-49682065[2]|[0]49682196-49682259[0]<==>chr19|+|[1]49673698-49673777[2] aggccgcgaactgcatcatggaggtgagcgcttggagcgccgccgtgggcgggaggcggctttggaattttgtagccaccttggctaatgggatgagcctccagccgcctcttgaagaagtgtcctgtggccaggcggaaagcagtgagaagcccaacgctgaggacatgacatccaaagattactactttgactcctacgcacactttggcatccacgaggagatgctgaaggacgaggtgcgcaccctcacttaccgcaactccatgtttcataaccggcacctcttcaaggacaaggtggtgctggacgtcggctcgggcaccggcatcctctgcatgtttgctgccaaggccggggcccgcaaggtcatcgggatcgagtgttccagtatctctgattatgcggtgaagatcgtcaaagccaacaagttagaccacgGAGGGCATCCTGGCTGTTTCACCCGTGGACTTGAACTTGCCATTGGACTGAGCTCTTTCTCAGAAGCTGCTACAAGATGA AANCIMEVSAWSAAVGGRRLWNFVATLANGMSLQPPLEEVSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHGGHPGCFTRGLELAIGLSSFSEAATR* FALSE TRUE hsa-mir-5088 chr19:49682117-49682195:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE BCL2 like 12 2 melanoma, SCC epithelial oncogene missense 29227 TMEM123::MMP20 ENSG00000152558.15::ENSG00000137674.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 527 TRUE 987 TRUE 363 TMEM123 ENSG00000152558.15 protein_coding - - chr11:102396332-102470384:- chr11:102448812:- chr11:102267063-102341115:- chr11:102319543:- MMP20 ENSG00000137674.4 protein_coding - - chr11:102576832-102625332:- chr11:102610030:- chr11:102447563-102496063:- chr11:102480761:- chr11:102440151,chr11:102440158 chr11:102614128,chr11:102614132 NA NA chr11:102310882,chr11:102310889 chr11:102484859,chr11:102484863 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Endomucin|12-157|9.6e-06^RIFIN-PARTIAL|13-157~|0.00011^MGC-24|45-95|0.071^Plasmodium_Vir|46-148|0.0025^SOG2-PARTIAL|47-157~|0.00029^MGC-24-PARTIAL|102-157~|2.3e-12 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr11:0.11Mb] 166 83 166 58.14 ONLY_REF_SPLICE YES_LDAS 2.3192 GT 1.9656 AG 1.9899 ENST00000398136.7 1-157 ENST00000260228.3 524-1452 chr11|-|[0]102448812-102448868[1]|[0]102452524-102452623[0]<==>chr11|-|[2]102577326-102577426[1]|[0]102579039-102579142[2]|[1]102593439-102593595[1]|[0]102594621-102594757[2]|[1]102606535-102606676[1]|[0]102608937-102609098[1]|[0]102609905-102610030[1] atgggactcggcgcgcgaggtgcttgggccgcgctgctcctggggacgctgcaggtgctagcgctgctgggggccgcccatgaaagcgcagccatggcggcatctgcaaacatagagaattctgggcttccacacaactccagtgctaactcaacagATCACGGGGATTCCTATCCATTCGATGGGCCTCGGGGGACTCTAGCCCATGCATTTGCTCCTGGAGAAGGCCTGGGAGGAGATACACATTTCGACAATGCTGAGAAGTGGACTATGGGAACGAATGGTTTTAATTTGTTTACCGTTGCTGCTCATGAATTTGGCCATGCCCTGGGCCTGGCCCATTCCACAGACCCATCAGCACTGATGTACCCAACTTATAAGTACAAGAATCCCTATGGATTCCACCTCCCCAAAGATGATGTGAAAGGGATCCAGGCATTATACGGACCTCGGAAAGTATTCCTGGGGAAGCCCACTCTGCCCCATGCCCCCCATCACAAGCCATCCATCCCTGACCTCTGTGACTCCAGCTCATCCTTTGACGCTGTGACAATGCTGGGGAAGGAGCTCCTGCTCTTCAAGGACCGGATTTTCTGGAGACGGCAGGTTCACTTGCGGACAGGAATTCGGCCCAGCACTATTACCAGCTCCTTCCCCCAGCTCATGTCCAATGTGGATGCAGCTTACGAAGTGGCTGAGAGGGGCACTGCTTACTTCTTCAAAGGTCCCCACTACTGGATAACAAGAGGATTCCAAATGCAAGGTCCTCCTCGGACTATTTATGACTTTGGATTTCCAAGGCACGTGCAGCAAATAGATGCTGCTGTCTACCTCAGGGAGCCACAGAAGACCCTTTTCTTTGTGGGAGATGAATACTACAGCTACGACGAAAGGAAAAGGAAAATGGAAAAAGACTATCCAAAGAATACTGAAGAAGAATTTTCAGGAGTAAATGGCCAAATCGATGCTGCTGTAGAATTAAATGGCTACATTTACTTCTTTTCAGGACCAAAAACATACAAGTATGACACAGAGAAGGAAGATGTGGTTAGTGTGGTGAAATCTAGTTCCTGGATTGGTTGCTAA MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYGPRKVFLGKPTLPHAPHHKPSIPDLCDSSSSFDAVTMLGKELLLFKDRIFWRRQVHLRTGIRPSTITSSFPQLMSNVDAAYEVAERGTAYFFKGPHYWITRGFQMQGPPRTIYDFGFPRHVQQIDAAVYLREPQKTLFFVGDEYYSYDERKRKMEKDYPKNTEEEFSGVNGQIDAAVELNGYIYFFSGPKTYKYDTEKEDVVSVVKSSSWIGC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma,Colon adenocarcinoma,Stomach adenocarcinoma,Breast invasive carcinoma LUNG,COLON,STOMACH,BREAST exact 102319543,102319543,102319543|102318967,102319543 TRUE,TRUE,TRUE|FALSE,TRUE 102480761,102464326,102449873|102449873,102480761 TRUE,FALSE,FALSE|FALSE,TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29228 MTAP::PCDH7 ENSG00000099810.21::ENSG00000169851.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 529 FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ PCDH7 ENSG00000169851.16 protein_coding + + chr4:30720369-31146805:+ chr4:30920153:+ chr4:30721991-31148427:+ chr4:30921775:+ chr9:21858484,chr9:21858480 chr4:30814979,chr4:30814972 NA NA chr9:21858483,chr9:21858479 chr4:30816601,chr4:30816594 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PNP_UDP_1|28-272|1.7e-53^DUF4938|79-144|2.3e-05 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr4] 132 58 132 58 ONLY_REF_SPLICE YES_LDAS 1.9659 GT 1.5219 AG 1.9656 ENST00000460874.6 1-741 ENST00000695919.1 3175-3768 chr9|+|[0]21802867-21802950[2]|[0]21815433-21815519[2]|[0]21816714-21816772[1]|[2]21818035-21818202[1]|[2]21837908-21838010[2]|[0]21854631-21854870[2]<==>chr4|+|[0]30920153-30920369[0]|[1]31142473-31142849[2] atgcgcccggcccgtgcgtcccttgccgccgcggggagggactggggcgcggcactcgggactcacttgccgcgcgaggagaggattggaataattggtggaacaggcctggatgatccagaaattttagaaggaagaactgaaaaatatgtggatactccatttggcaagccatctgatgccttaattttggggaagataaaaaatgttgattgcgtcctccttgcaaggcatggaaggcagcacaccatcatgccttcaaaggtcaactaccaggcgaacatctgggctttgaaggaagagggctgtacacatgtcatagtgaccacagcttgtggctccttgagggaggagattcagcccggcgatattgtcattattgatcagttcattgacaggaccactatgagacctcagtccttctatgatggaagtcattcttgtgccagaggagtgtgccatattccaatggctgagccgttttgccccaaaacgagagaggttcttatagagactgctaagaagctaggactccggtgccactcaaaggggacaatggtcacaatcgagggacctcgttttagctcccgggcagaaagcttcatgttccgcacctggggggcggatgttatcaacatgaccacagttccagaggtggttcttgctaaggaggctggaatttgttacgcaagtatcgccatggcgacagattatgactgctggaaggagcacgaggaagcaCCATTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCAGAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCAAGACTGGGTGCGCTTCCACTCCCAGAGGACAACTATGAAAGGACCACGCCGGATGGCAGTGTTGGTGAGGCAGAGCATATGGAAAATGATTCAAGGCCTCTTCCAGATGTAGCCCTGACTGGGAAGTGCACTCGTGAGTGTGATGAGTATGGCCACTCAGACTCCTGCTGGATGCCGGTCCGCACTTCTCCGGAGAGGAAGAAGAGCCAGCCTAAACTGTCCACTTTCATGCCTGTTGATGAACGAGGAAGCCAGGAAAAGCTGGCCAATGGGGAGGCCGCCATCATGGGTGACCGCAACAGAAACCTCCTGAACAAAAAGTTGACCTCATCCTATGAGACCTTCAGTGCAGCTAGTTTCAGCAAAAATGAGGAAGCCAACCCTGAGGATATTCCCCTTACAAAAACAGGGGAATATAAGCCATCTCCTGTCAATACTCTCACTAGAAGAGAAGTTTACCTGTAG MRPARASLAAAGRDWGAALGTHLPREERIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDGSHSCARGVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAPFRRVTFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVALTGKCTRECDEYGHSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDRNRNLLNKKLTSSYETFSAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29230 ATAD2::ENSG00000258425 ENSG00000156802.13::ENSG00000258425.1 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123396187:- chr8:124332090-124428590:- chr8:124408427:- ENSG00000258425 ENSG00000258425.1 lncRNA + + chr14:74552181-74560048:+ chr14:74559764:+ chr14:75018884-75026751:+ chr14:75026467:+ chr8:123395937,chr8:123395948 chr14:74558424,chr14:74558413 NA NA chr8:124408177,chr8:124408188 chr14:75025127,chr14:75025116 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 62 33 62 33 ONLY_REF_SPLICE YES_LDAS 0.9829 GT 1.585 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29231 XRCC6::UQCC2 ENSG00000196419.13::ENSG00000137288.10 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 531 FALSE NA FALSE NA XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ UQCC2 ENSG00000137288.10 protein_coding - - chr6:33694293-33711727:- chr6:33701420:- chr6:33662070-33679504:- chr6:33669197:- chr22:41656595,chr22:41656595 chr6:33706553,chr6:33706562 NA NA chr22:42052599,chr22:42052599 chr6:33674330,chr6:33674339 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ku_N|37-255|1.8e-88^Ku|265-459|1.6e-47^Ku_N|266-307|2.1^Ku_C|472-557|1.4e-32^SAP30_Sin3_bdg|482-490|0.8^SAP|573-607|6.1e-13^SAP30_Sin3_bdg|578-608|1.8e-05 none ["XRCC6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr6] 56 29 56 29 ONLY_REF_SPLICE YES_LDAS 0.8795 GT 1.9656 AG 1.9219 ENST00000360079.8 1-1291 ENST00000607484.6 139-381 chr22|+|[0]41622005-41622086[0]|[1]41628118-41628230[2]|[0]41636113-41636251[0]|[1]41636516-41636770[0]|[1]41637608-41637791[1]|[2]41646896-41647082[2]|[0]41650723-41650891[0]|[1]41653529-41653690[0]<==>chr6|-|[2]33697653-33697750[1]|[0]33700444-33700513[0]|[2]33701346-33701420[0] atgtcagggtgggagtcatattacaaaaccgagggcgatgaagaagcagaggaagaacaagaagagaaccttgaagcaagtggagactataaatattcaggaagagatagtttgatttttttggttgatgcctccaaggctatgtttgaatctcagagtgaagatgagttgacaccttttgacatgagcatccagtgtatccaaagtgtgtacatcagtaagatcataagcagtgatcgagatctcttggctgtggtgttctatggtaccgagaaagacaaaaattcagtgaattttaaaaatatttacgtcttacaggagctggataatccaggtgcaaaacgaattctagagcttgaccagtttaaggggcagcagggacaaaaacgtttccaagacatgatgggccacggatctgactactcactcagtgaagtgctgtgggtctgtgccaacctctttagtgatgtccaattcaagatgagtcataagaggatcatgctgttcaccaatgaagacaacccccatggcaatgacagtgccaaagccagccgggccaggaccaaagccggtgatctccgagatacaggcatcttccttgacttgatgcacctgaagaaacctgggggctttgacatatccttgttctacagagatatcatcagcatagcagaggatgaggacctcagggttcactttgaggaatccagcaagctagaagacctgttgcggaaggttcgcgccaaggagaccaggaagcgagcactcagcaggttaaagctgaagctcaacaaagatatagtgatctctgtgggcatttataatctggtccagaaggctctcaagcctcctccaataaagctctatcgggaaacaaatgaaccagtgaaaaccaagacccggacctttaatacaagtacaggcggtttgcttctgcctagcgataccaagaggtctcagatctatgggagtcgtcagattatactggagaaagaggaaacagaagagctaaaacggtttgatgatccaggtttgatgctcatgggtttcaagccgttggtactgctgaagaaacaccattacctgaggccctccctgttcgtgtacccagaggagtcgctggtgattgggagctcaaccctgttcagtgctctgctcatcaagtgtctggagaaggaggttgcagcattgtgcagatacacaccccgcaggaacatccctccttattttgtggctttggtgccacaggaagaagagttggatgaccagaaaattcaggtgactcctccagGTTGCAGAGCCTGAGGCCTGTGATCAGATGTACGAGAGCTTAGCGCGACTCCATTCAAACTACTACAAACACAAGTACCCTCGCCCCAGAGACACCAGCTTCAGTGGCCTGTCGTTGGAAGAGTACAAGCTGATCCTGTCCACAGACACCTTGGAAGAGCTTAAGGAAATAGATAAAGGCATGTGGAAGAAACTGCAGGAGAAGTTTGCCCCCAAGGGTCCTGAGGAGGATCATAAGGCCTGA MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGCRA*GL*SDVRELSATPFKLLQTQVPSPQRHQLQWPVVGRVQADPVHRHLGRA*GNR*RHVEETAGEVCPQGS*GGS*GL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29233 TMEM123::MMP20 ENSG00000152558.15::ENSG00000137674.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 528 TRUE 987 TRUE 363 TMEM123 ENSG00000152558.15 protein_coding - - chr11:102396332-102470384:- chr11:102448812:- chr11:102267063-102341115:- chr11:102319543:- MMP20 ENSG00000137674.4 protein_coding - - chr11:102576832-102625332:- chr11:102611903:- chr11:102447563-102496063:- chr11:102482634:- chr11:102440151,chr11:102440158 chr11:102614128,chr11:102614132 NA NA chr11:102310882,chr11:102310889 chr11:102484859,chr11:102484863 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Endomucin|12-157|9.6e-06^RIFIN-PARTIAL|13-157~|0.00011^MGC-24|45-95|0.071^Plasmodium_Vir|46-148|0.0025^SOG2-PARTIAL|47-157~|0.00029^MGC-24-PARTIAL|102-157~|2.3e-12 Hemopexin-PARTIAL|~375-388|9.6e-13^Hemopexin|394-439|4.5e-12^Hemopexin|443-483|3.4e-11^PG_binding_1|449-472|1.4 ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr11:0.11Mb] 55 99 55 40.86 ONLY_REF_SPLICE YES_LDAS 0.9919 GT 1.9656 AG 1.4566 ENST00000398136.7 1-157 ENST00000260228.3 375-1452 chr11|-|[0]102448812-102448868[1]|[0]102452524-102452623[0]<==>chr11|-|[2]102577326-102577426[1]|[0]102579039-102579142[2]|[1]102593439-102593595[1]|[0]102594621-102594757[2]|[1]102606535-102606676[1]|[0]102608937-102609098[1]|[0]102609905-102610030[1]|[0]102611755-102611903[2] atgggactcggcgcgcgaggtgcttgggccgcgctgctcctggggacgctgcaggtgctagcgctgctgggggccgcccatgaaagcgcagccatggcggcatctgcaaacatagagaattctgggcttccacacaactccagtgctaactcaacagAATATCTAAATACACACCTTCCATGAGTTCTGTCGAGGTGGACAAAGCAGTGGAGATGGCCTTGCAGGCCTGGAGTAGCGCCGTCCCTCTGAGCTTTGTCAGAATAAACTCAGGAGAAGCGGATATTATGATATCTTTTGAAAATGGAGATCACGGGGATTCCTATCCATTCGATGGGCCTCGGGGGACTCTAGCCCATGCATTTGCTCCTGGAGAAGGCCTGGGAGGAGATACACATTTCGACAATGCTGAGAAGTGGACTATGGGAACGAATGGTTTTAATTTGTTTACCGTTGCTGCTCATGAATTTGGCCATGCCCTGGGCCTGGCCCATTCCACAGACCCATCAGCACTGATGTACCCAACTTATAAGTACAAGAATCCCTATGGATTCCACCTCCCCAAAGATGATGTGAAAGGGATCCAGGCATTATACGGACCTCGGAAAGTATTCCTGGGGAAGCCCACTCTGCCCCATGCCCCCCATCACAAGCCATCCATCCCTGACCTCTGTGACTCCAGCTCATCCTTTGACGCTGTGACAATGCTGGGGAAGGAGCTCCTGCTCTTCAAGGACCGGATTTTCTGGAGACGGCAGGTTCACTTGCGGACAGGAATTCGGCCCAGCACTATTACCAGCTCCTTCCCCCAGCTCATGTCCAATGTGGATGCAGCTTACGAAGTGGCTGAGAGGGGCACTGCTTACTTCTTCAAAGGTCCCCACTACTGGATAACAAGAGGATTCCAAATGCAAGGTCCTCCTCGGACTATTTATGACTTTGGATTTCCAAGGCACGTGCAGCAAATAGATGCTGCTGTCTACCTCAGGGAGCCACAGAAGACCCTTTTCTTTGTGGGAGATGAATACTACAGCTACGACGAAAGGAAAAGGAAAATGGAAAAAGACTATCCAAAGAATACTGAAGAAGAATTTTCAGGAGTAAATGGCCAAATCGATGCTGCTGTAGAATTAAATGGCTACATTTACTTCTTTTCAGGACCAAAAACATACAAGTATGACACAGAGAAGGAAGATGTGGTTAGTGTGGTGAAATCTAGTTCCTGGATTGGTTGCTAA MGLGARGAWAALLLGTLQVLALLGAAHESAAMAASANIENSGLPHNSSANSTEYLNTHLP*VLSRWTKQWRWPCRPGVAPSL*ALSE*TQEKRIL*YLLKMEITGIPIHSMGLGGL*PMHLLLEKAWEEIHISTMLRSGLWERMVLICLPLLLMNLAMPWAWPIPQTHQH*CTQLISTRIPMDSTSPKMM*KGSRHYTDLGKYSWGSPLCPMPPITSHPSLTSVTPAHPLTL*QCWGRSSCSSRTGFSGDGRFTCGQEFGPALLPAPSPSSCPMWMQLTKWLRGALLTSSKVPTTG*QEDSKCKVLLGLFMTLDFQGTCSK*MLLSTSGSHRRPFSLWEMNTTATTKGKGKWKKTIQRILKKNFQE*MAKSMLL*N*MATFTSFQDQKHTSMTQRRKMWLVW*NLVPGLVA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma,Colon adenocarcinoma,Stomach adenocarcinoma,Breast invasive carcinoma LUNG,COLON,STOMACH,BREAST exact 102319543,102319543,102319543|102318967,102319543 TRUE,TRUE,TRUE|FALSE,TRUE 102480761,102464326,102449873|102449873,102480761 FALSE,FALSE,FALSE|FALSE,FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29236 MBOAT2::PRKCE ENSG00000143797.12::ENSG00000171132.14 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 534 FALSE NA FALSE NA MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8882511:- chr2:8992820-9143838:- chr2:9022641:- PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:46145093:+ chr2:45878484-46415129:+ chr2:46372232:+ chr2:8877511,chr2:8877519 chr2:46098802,chr2:46098794 NA NA chr2:9017641,chr2:9017649 chr2:46325941,chr2:46325933 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MBOAT|49-101|0.003^MBOAT|118-430|3.9e-37 none ["ChimerKB","Klijn_CellLines","DepMap2023","Cosmic","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:36.65Mb] 45 34 45 34 ONLY_REF_SPLICE YES_LDAS 0.8174 GT 1.8256 AG 1.8256 ENST00000305997.8 1-506 ENST00000306156.8 1593-2214 chr2|-|[1]8882511-8882565[1]|[0]8888018-8888073[2]|[1]8908621-8908716[2]|[1]8943187-8943264[2]|[1]8958497-8958642[0]|[2]9003540-9003614[0]<==>chr2|+|[2]46145093-46145231[2]|[0]46151041-46151229[2]|[0]46159606-46159752[2]|[0]46184735-46184881[2] atggccaccaccagcaccacgggctccaccctgctgcagcccctcagcaacgccgtgcagctgcccatcgaccaggtcaactttgtagtgtgccaactctttgccttgctagcagccatttggtttcgaacttatctacattcaagcaaaactagctcttttataagacatgtagttgctacccttttgggcctttatcttgcacttttttgctttggatggtatgccttacactttcttgtacaaagtggaatttcctactgtatcatgatcatcataggagtggagaacatgcacaattactgctttgtgtttgctctgggatacctcacagtgtgccaagttactcgagtctatatctttgactatggacaatattctgctgatttttcaggcccaatgatgatcattactcagaagatcactagtttggcttgcgaaattcatgatgggatgtttcggaaggatgaagaactgacttcctcacagagggatttagctgtaagGGATTTGAAACTGGACAACATCCTTCTGGATGCAGAAGGTCACTGCAAGCTGGCTGACTTCGGGATGTGCAAGGAAGGGATTCTGAATGGTGTGACGACCACCACGTTCTGTGGGACTCCTGACTACATAGCTCCTGAGATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGATGATGGCTGGACAGCCTCCCTTTGAGGCCGACAATGAGGACGACCTATTTGAGTCCATCCTCCATGACGACGTGCTGTACCCAGTCTGGCTCAGCAAGGAGGCTGTCAGCATCTTGAAAGCTTTCATGACGAAGAATCCCCACAAGCGCCTGGGCTGTGTGGCATCGCAGAATGGCGAGGACGCCATCAAGCAGCACCCATTCTTCAAAGAGATTGACTGGGTGCTCCTGGAGCAGAAGAAGATCAAGCCACCCTTCAAACCACGCATTAAAACCAAAAGAGACGTCAATAATTTTGACCAAGACTTTACCCGGGAAGAGCCGGTACTCACCCTTGTGGACGAAGCAATTGTAAAGCAGATCAACCAGGAGGAATTCAAAGGTTTCTCCTACTTTGGTGAAGACCTGATGCCCTGA MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSFIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMIIIGVENMHNYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVWLSKEAVSILKAFMTKNPHKRLGCVASQNGEDAIKQHPFFKEIDWVLLEQKKIKPPFKPRIKTKRDVNNFDQDFTREEPVLTLVDEAIVKQINQEEFKGFSYFGEDLMP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29238 RNF111::TCF12 ENSG00000157450.16::ENSG00000140262.18 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 532 TRUE 991 TRUE 365 RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:58988068:+ chr15:59157374-59389618:+ chr15:59280267:+ TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57192158:+ chr15:57210821-57591479:+ chr15:57484356:+ chr15:59004745,chr15:59004743 chr15:57169752,chr15:57169747 NA NA chr15:59296944,chr15:59296942 chr15:57461950,chr15:57461945 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCF12:Oncogene"];["TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:1.69Mb] 42 35 42 30 ONLY_REF_SPLICE YES_LDAS 0.745 GT 1.8256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER exact 59359282,59280267 FALSE,TRUE 57383987,57565228 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation 29241 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39917321:- chr17:38060848-38076107:- chr17:38073574:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.45Mb] 28 14 28 7.54 ONLY_REF_SPLICE YES_LDAS 0.3677 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29242 PDZRN3::LINC02005 ENSG00000121440.15::ENSG00000242741.2 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PDZRN3 ENSG00000121440.15 protein_coding - - chr3:73382431-73624941:- chr3:73602354:- chr3:73431582-73674092:- chr3:73651505:- LINC02005 ENSG00000242741.2 lncRNA + + chr3:73805754-73902960:+ chr3:73869776:+ chr3:73854905-73952111:+ chr3:73918927:+ chr3:73594971,chr3:73594975 chr3:73868281,chr3:73868277 NA NA chr3:73644122,chr3:73644126 chr3:73917432,chr3:73917428 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 28 15 28 15 ONLY_REF_SPLICE YES_LDAS 0.4449 GT 1.8256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29243 TPD52::PAG1 ENSG00000076554.16::ENSG00000076641.4 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TPD52 ENSG00000076554.16 protein_coding - - chr8:80034745-80231232:- chr8:80171425:- chr8:80946980-81143467:- chr8:81083660:- PAG1 ENSG00000076641.4 protein_coding - - chr8:80967810-81112068:- chr8:81070170:- chr8:81880045-82024303:- chr8:81982405:- chr8:80094638,chr8:80094640 chr8:81097191,chr8:81097190 NA NA chr8:81006873,chr8:81006875 chr8:82009426,chr8:82009425 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TPD52:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.74Mb] 26 1 26 0.9 ONLY_REF_SPLICE YES_LDAS 0.2783 GT 1.5656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29244 KMT2A::ATP5MG ENSG00000118058.25::ENSG00000167283.9 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 549 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ ATP5MG ENSG00000167283.9 protein_coding + + chr11:118401346-118433278:+ chr11:118431024:+ chr11:118272061-118303993:+ chr11:118301739:+ chr11:118483761 chr11:118425412 NA NA chr11:118354476 chr11:118296127 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.096^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1657|0.0086^PHD|1602-1657|8.6e-10^PHD_2|1616-1632|0.033^Bromodomain|1734-1775|1e-05^zf-HC5HC2H_2|1905-2008|1.7e-12^zf-HC5HC2H|1933-2011|9e-14^PHD|1966-1995|0.95^FYRN|2052-2107|3.6e-20^FYRC|3702-3781|8.3e-24^SET|3873-3978|6.7e-31 none ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"] 24 13 24 13 ONLY_REF_SPLICE YES_LDAS 0.3828 GT 1.1033 AG 1.3383 ENST00000710560.1 1-4185 ENST00000690793.1 214-231 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]<==>chr11|+|[0]118431024-118431041[2] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaagAAAAAAAGCAGCACCTGA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKKKSST* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other FALSE NA NA NA NA NA NA NA NA NA 29247 WDR70::NIPBL ENSG00000082068.9::ENSG00000164190.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA WDR70 ENSG00000082068.9 protein_coding + + chr5:37379285-37753435:+ chr5:37381685:+ chr5:37379387-37753537:+ chr5:37381787:+ NIPBL ENSG00000164190.19 protein_coding + + chr5:36876769-37066413:+ chr5:36953618:+ chr5:36876871-37066515:+ chr5:36953720:+ chr5:37390222,chr5:37390192,chr5:37390223 chr5:36897353,chr5:36896998,chr5:36897351 NA NA chr5:37390324,chr5:37390294,chr5:37390325 chr5:36897455,chr5:36897100,chr5:36897453 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NIPBL:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.31Mb] 21 8 21 8 ONLY_REF_SPLICE YES_LDAS 0.3001 GT 1.9329 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29249 SLC26A6::PRKAR2A ENSG00000225697.13::ENSG00000114302.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 550 FALSE NA FALSE NA SLC26A6 ENSG00000225697.13 protein_coding - - chr3:48625723-48635493:- chr3:48627946:- chr3:48663156-48672926:- chr3:48665379:- PRKAR2A ENSG00000114302.17 protein_coding - - chr3:48744597-48847874:- chr3:48790627:- chr3:48782030-48885307:- chr3:48828060:- chr3:48627181,chr3:48627185,chr3:48627185 chr3:48792317,chr3:48792318,chr3:48792638 NA NA chr3:48664614,chr3:48664618,chr3:48664618 chr3:48829750,chr3:48829751,chr3:48830071 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF2564|10-30|0.66^Sulfate_transp|90-480|5.7e-116^MFS_MOT1|140-225|0.13^DUF2564|153-186|0.098^MFS_MOT1|266-304|0.081^MFS_MOT1|364-450|2.7e-07^STAS|532-738|1.8e-15^DUF2564|556-587|0.0011 cNMP_binding-PARTIAL|~352-371|2.5e-24^Luteo_PO-PARTIAL|~352-405|4.7e-05 ["Mitelman","ChimerKB","Klijn_CellLines","DepMap2023","Cosmic","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.11Mb] 19 7 19 7 ONLY_REF_SPLICE YES_LDAS 0.269 GT 1.9086 AG 1.9086 ENST00000395550.7 1-1893 ENST00000706572.1 352-1377 chr3|-|[2]48627946-48628038[0]|[2]48628434-48628541[0]|[2]48628622-48628714[0]|[2]48629642-48629711[2]|[1]48629872-48629978[0]|[2]48630062-48630157[0]|[2]48630438-48630515[0]|[2]48630607-48630720[0]|[2]48630993-48631140[2]|[1]48631224-48631306[0]|[2]48631649-48631801[0]|[2]48631880-48632044[0]|[2]48632245-48632396[1]|[0]48632974-48633084[1]|[0]48633251-48633390[2]|[1]48633477-48633635[2]|[1]48635371-48635393[0]<==>chr3|-|[2]48747775-48747940[2]|[1]48751589-48751718[1]|[0]48752176-48752317[0]|[2]48756379-48756444[0]|[2]48765004-48765078[0]|[2]48765248-48765349[0]|[2]48772955-48773108[2]|[1]48782986-48783092[0]|[2]48790544-48790627[0] atggggctggcggatgcgtcgggaccgagggacacacaggcactgctgtctgcaacacaagcaatggacctgcggaggcgagactaccacatggaacggccgctgctgaaccaggagcatttggaggagctggggcgctggggctcagcacctaggacccaccagtggcggacctggttgcagtgctcccgtgctcgggcctatgcccttctgctccaacacctcccggttttggtctggttaccccggtatcctgtgcgtgactggctcctgggtgacctgttatccggcctgagtgtggccatcatgcagcttccgcagggcttggcctacgccctcctggctggattgccccccgtgtttggcctctatagctccttctaccctgtcttcatctacttcctgtttggcacttcccggcacatctccgtggggacctttgctgtcatgtctgtgatggtgggcagtgtgacagaatccctggccccgcaggccttgaacgactccatgatcaatgagacagccagagatgctgcccgggtacaggtggcctccacactcagtgtcctggttggcctcttccaggtggggctgggcctgatccacttcggcttcgtggtcacctacctgtcagaacctcttgtccgaggctataccacagctgcagctgtgcaggtcttcgtctcacagctcaagtatgtgtttggcctccatctgagcagccactctgggccactgtccctcatctatacagtgctggaggtctgctggaagctgccccagagcaaggttggcaccgtggtcactgcagctgtggctggggtggtgctcgtggtggtgaagctgttgaatgacaagctgcagcagcagctgcccatgccgatacccggggagctgctcacgctcatcggggccacaggcatctcctatggcatgggtctaaagcacagatttgaggtagatgtcgtgggcaacatccctgcagggctggtgcccccagtggcccccaacacccagctgttctcaaagctcgtgggcagcgccttcaccatcgctgtggttgggtttgccattgccatctcactggggaagatcttcgccctgaggcacggctaccgggtggacagcaaccaggagctggtggccctgggcctcagtaaccttatcggaggcatcttccagtgcttccccgtgagttgctctatgtctcggagcctggtacaggagagcaccgggggcaactcgcaggttgctggagccatctcttcccttttcatcctcctcatcattgtcaaacttggggaactcttccatgacctgcccaaggcggtcctggcagccatcatcattgtgaacctgaagggcatgctgaggcagctcagcgacatgcgctccctctggaaggccaatcgggcggatctgcttatctggctggtgaccttcacggccaccatcttgctgaacctggaccttggcttggtggttgcggtcatcttctccctgctgctcgtggtggtccggacacagatgccccactactctgtcctggggcaggtgccagacacggatatttacagagatgtggcagagtactcagaggccaaggaagtccggggggtgaaggtcttccgctcctcggccaccgtgtactttgccaatgctgagttctacagtgatgcgctgaagcagaggtgtggtgtggatgtcgacttcctcatctcccagaagaagaaactgctcaagaagcaggagcagctgaagctgaagcaactgcagaaagaggagaagcttcggaaacaggctgcctcccccaagggcgcctcagtttccattaatgtcaacaccagccttgaagacatgaggagcaacaacgttgaggactgcaagatgatgGTGATTCATCCTAAAACTGATGAACAGAGATGCAGACTTCAGGAAGCTTGCAAAGATATTCTCCTTTTCAAAAATCTTGATCAGGAACAGCTTTCTCAAGTTCTCGATGCCATGTTTGAAAGGATAGTCAAAGCTGATGAGCATGTCATTGACCAAGGAGATGATGGAGACAACTTTTATGTCATAGAACGGGGAACTTATGACATTTTAGTAACAAAAGATAATCAAACCCGCTCTGTTGGTCAATATGACAACCGTGGCAGTTTTGGAGAACTAGCTCTGATGTACAACACCCCGAGAGCTGCTACCATTGTTGCTACCTCAGAAGGCTCCCTTTGGGGACTGGACCGGGTGACTTTTAGAAGAATCATAGTGAAAAATAATGCAAAGAAGAGGAAGATGTTTGAATCATTTATTGAGTCTGTGCCCCTCCTTAAATCACTAGAGGTGTCAGAACGAATGAAGATTGTGGATGTAATAGGAGAGAAGATCTATAAGGATGGAGAACGCATAATCACTCAGGGTGAAAAGGCTGATAGCTTTTACATCATAGAGTCTGGCGAAGTGAGCATCTTGATTAGAAGCAGGACTAAATCAAACAAGGATGGTGGGAACCAGGAGGTCGAGATTGCCCGCTGCCATAAGGGGCAGTACTTTGGAGAGCTTGCCCTGGTCACCAACAAACCCAGAGCTGCCTCAGCTTATGCAGTTGGAGATGTCAAATGCTTAGTTATGGATGTACAAGCATTCGAGAGGCTTCTGGGGCCCTGCATGGACATCATGAAGAGGAACATCTCACACTATGAGGAACAGCTGGTGAAGATGTTTGGCTCCAGCGTGGATCTGGGCAACCTCGGGCACATGGGGAATCAAAGGTGGCATGCCAAGTTCAACTCAGGGCTGAGGTATCCACATTGTCCACATCAGGCAAGCCCTGCACTGACGGTTGAGCCTCATGGAGAGGAGCATGTGTTGGAAAGAGATCCCTTTGTTAACTGTTTTGTGGTGTTCTCTTCAATGAATTAG MGLADASGPRDTQALLSATQAMDLRRRDYHMERPLLNQEHLEELGRWGSAPRTHQWRTWLQCSRARAYALLLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFYPVFIYFLFGTSRHISVGTFAVMSVMVGSVTESLAPQALNDSMINETARDAARVQVASTLSVLVGLFQVGLGLIHFGFVVTYLSEPLVRGYTTAAAVQVFVSQLKYVFGLHLSSHSGPLSLIYTVLEVCWKLPQSKVGTVVTAAVAGVVLVVVKLLNDKLQQQLPMPIPGELLTLIGATGISYGMGLKHRFEVDVVGNIPAGLVPPVAPNTQLFSKLVGSAFTIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGIFQCFPVSCSMSRSLVQESTGGNSQVAGAISSLFILLIIVKLGELFHDLPKAVLAAIIIVNLKGMLRQLSDMRSLWKANRADLLIWLVTFTATILLNLDLGLVVAVIFSLLLVVVRTQMPHYSVLGQVPDTDIYRDVAEYSEAKEVRGVKVFRSSATVYFANAEFYSDALKQRCGVDVDFLISQKKKLLKKQEQLKLKQLQKEEKLRKQAASPKGASVSINVNTSLEDMRSNNVEDCKMMVIHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFERIVKADEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIVATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLLKSLEVSERMKIVDVIGEKIYKDGERIITQGEKADSFYIIESGEVSILIRSRTKSNKDGGNQEVEIARCHKGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGPCMDIMKRNISHYEEQLVKMFGSSVDLGNLGHMGNQRWHAKFNSGLRYPHCPHQASPALTVEPHGEEHVLERDPFVNCFVVFSSMN* FALSE TRUE hsa-mir-6824 chr3:48633636-48633698:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29250 STAT3::CAVIN1 ENSG00000168610.16::ENSG00000177469.13 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 555 FALSE NA FALSE NA STAT3 ENSG00000168610.16 protein_coding - - chr17:42313324-42388540:- chr17:42388279:- chr17:40465342-40540558:- chr17:40540297:- CAVIN1 ENSG00000177469.13 protein_coding - - chr17:42402449-42423256:- chr17:42405388:- chr17:40554467-40575274:- chr17:40557406:- chr17:42376618 chr17:42414519 NA NA chr17:40528636 chr17:40566537 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["STAT3:ArcherDX_panel","STAT3:Oncogene","STAT3:FoundationOne_panel"];["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 19 8 19 8 ONLY_REF_SPLICE YES_LDAS 0.2794 GT 1.8256 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix,Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE signal transducer and activator of transcription 3 (acute-phase response factor) 1 Yes T-cell large granular lymphocytic leukaemia paediatric large granular lymphocytic leukaemia leukaemia_lymphoma oncogene missense,other FALSE NA NA NA NA NA NA NA NA NA 29252 LCORL::RAB2A ENSG00000178177.17::ENSG00000104388.15 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 548 FALSE NA FALSE NA LCORL ENSG00000178177.17 protein_coding - - chr4:17841187-18021876:- chr4:17909094:- chr4:17842810-18023499:- chr4:17910717:- RAB2A ENSG00000104388.15 protein_coding + + chr8:60516936-60623644:+ chr8:60618580:+ chr8:61429495-61536203:+ chr8:61531139:+ chr4:17900636,chr4:17900638 chr8:60595348,chr8:60595346 NA NA chr4:17902259,chr4:17902261 chr8:61507907,chr8:61507905 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Perm-CXXC|86-100|1.4e-05^Perm-CXXC|218-226|0.43 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr8] 19 12 19 12 ONLY_REF_SPLICE YES_LDAS 0.3208 GT 1.7232 AG 1.7056 ENST00000675143.1 1-682 ENST00000529579.5 363-546 chr4|-|[0]17909094-17909345[1]|[0]17961903-17962032[0]|[2]17962970-17963049[1]|[0]17972820-17972885[1]|[0]18021598-18021751[0]<==>chr8|+|[2]60618580-60618648[1]|[2]60620674-60620788[2] atggacaagggaagagagagaatggccgctgccgccgccgctgctgccgccgccgccgccgccgctcagtgccggagccctcggtgcgcggcggagagaagaggattccggcgggaactcgactcttggcgccaccgcctcatgcactgtgtaggttttgagagtattttagaagggctttatggaccacggctacgaagagacctcagtttatttgaagactgtgaaccagaagagctgactgactggtctatggatgaaaaatgttcattttgtaacctacagagagaagcagtcagtgattgtataccatctcttgattcttcacagtcaacaccaacagaggagctatcatctcagggccagtccaacactgataagattgaatgccaagcagaaaattacctaaatgcactctttcgaaagaaagatcttcctcagaactgtgatcctaacattcccctagttgctcaggaattaatgaaaaagatgatacgtcaatttgcgattgagtacatttcaaaaagtggtaaaactcaagagaatagaaatggttcaattggaccaagtatagtatgtaaaagtatccaaatgaatcaagcagaaaactcccttcaggaagagcaggaaggccccttagacctcactgtgaatcgaatgcaagaacaaaatactcagcaagGCATTTATTAATACAGCAAAAGAAATTTATGAAAAAATTCAAGAAGGAGTCTTTGACATTAATAATGAGGCAAATGGCATTAAAATTGGCCCTCAGCATGCTGCTACCAATGCAACACATGCAGGCAATCAGGGAGGACAGCAGGCTGGGGGCGGCTGCTGTTGAGTCTGTTTTTACTGTCTAG MDKGRERMAAAAAAAAAAAAAAQCRSPRCAAERRGFRRELDSWRHRLMHCVGFESILEGLYGPRLRRDLSLFEDCEPEELTDWSMDEKCSFCNLQREAVSDCIPSLDSSQSTPTEELSSQGQSNTDKIECQAENYLNALFRKKDLPQNCDPNIPLVAQELMKKMIRQFAIEYISKSGKTQENRNGSIGPSIVCKSIQMNQAENSLQEEQEGPLDLTVNRMQEQNTQQGIY*YSKRNL*KNSRRSL*H***GKWH*NWPSACCYQCNTCRQSGRTAGWGRLLLSLFLLS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29259 PRKCE::MBOAT2 ENSG00000171132.14::ENSG00000143797.12 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 535 FALSE NA FALSE NA PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:46086362:+ chr2:45878484-46415129:+ chr2:46313501:+ MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8888073:- chr2:8992820-9143838:- chr2:9028203:- chr2:46119203,chr2:46119203,chr2:46119202 chr2:8895923,chr2:8895924,chr2:8895922 NA NA chr2:46346342,chr2:46346342,chr2:46346341 chr2:9036053,chr2:9036054,chr2:9036052 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|7-116|2.3e-15^PKC_C2|38-123|1.3e-07^FYVE_2|147-214|0.018^C1_1|170-221|6e-20^C1_2|181-212|0.0037^PHD_4|199-215|0.074^C1_1|243-294|1e-21^C1_2|249-284|0.0016^FYVE_2|254-287|0.0027^PHD_4|271-287|0.00082^FTA2|406-441|0.0006^Pkinase|409-668|7.2e-70^PK_Tyr_Ser-Thr|409-650|2.6e-40^ABC1|414-444|0.014^ABC1|483-556|3.3e-06^Kdo|483-556|7.2e-05^FTA2|512-552|0.02^Kinase-like|522-613|1.8e-05^FTA2|673-719|2.4^Pkinase_C|689-730|4.2e-15 MBOAT-PARTIAL|~396-430|3.9e-37 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:36.65Mb] 16 12 16 12 ONLY_REF_SPLICE YES_LDAS 0.2897 GT 1.9899 AG 1.9329 ENST00000306156.8 1-1592 ENST00000305997.8 396-1563 chr2|+|[0]45652101-45652448[2]|[0]45843000-45843063[0]|[1]45976429-45976588[1]|[2]45978976-45979010[0]|[1]45980296-45980381[2]|[0]45984551-45984680[0]|[1]46001404-46001546[2]|[0]46004542-46004638[0]|[1]46007462-46007661[2]|[0]46010344-46010517[2]|[0]46086208-46086362[1]<==>chr2|-|[2]8858679-8858904[2]|[1]8860613-8860764[0]|[2]8862590-8862722[2]|[1]8864170-8864234[0]|[2]8868446-8868549[1]|[0]8873108-8873300[0]|[2]8877030-8877213[2]|[1]8882511-8882565[1]|[0]8888018-8888073[2] atggtagtgttcaatggccttcttaagatcaaaatctgcgaggccgtgagcttgaagcccacagcctggtcgctgcgccatgcggtgggaccccggccgcagactttccttctcgacccctacattgccctcaatgtggacgactcgcgcatcggccaaacggccaccaagcagaagaccaacagcccggcctggcacgacgagttcgtcaccgatgtgtgcaacggacgcaagatcgagctggctgtctttcacgatgcccccataggctacgacgacttcgtggccaactgcaccatccagtttgaggagctgctgcagaacgggagccgccacttcgaggactggattgatctggagccagaaggaagagtgtatgtgatcatcgatctctcagggtcgtcgggtgaagcccctaaagacaatgaagagcgtgtgttcagggaacgcatgcggccgaggaagcggcagggggccgtcaggcgcagggtccatcaggtcaacggccacaagttcatggccacctatcttcggcagcccacctactgctcccattgcagagacttcatctggggtgtcataggaaagcagggataccagtgtcaagtctgcacctgcgtggtccacaagcggtgccacgagctcataatcacaaagtgtgctgggttaaagaagcaggagacccccgaccaggtgggctcccagcggttcagcgtcaacatgccccacaagttcggtatccacaactacaaggtccctaccttctgcgatcactgtgggtccctgctctggggactcttgcggcagggtttgcagtgtaaagtctgcaaaatgaatgttcaccgtcgatgtgagaccaacgtggctcccaactgtggagtggatgccagaggaatcgccaaagtactggccgacctgggcgttaccccagacaaaatcaccaacagcggccagagaaggaaaaagctcattgctggtgccgagtccccgcagcctgcttctggaagctcaccatctgaggaagatcgatccaagtcagcacccacctccccttgtgaccaggaaataaaagaacttgagaacaacattcggaaagccttgtcatttgacaaccgaggagaggagcaccgggcagcatcgtctcctgatggccagctgatgagccccggtgagaatggcgaagtccggcaaggccaggccaagcgcctgggcctggatgagttcaacttcatcaaggtgttgggcaaaggcagctttggcaaggtcatgttggcagaactcaagggcaaagatgaagtatatgctgtgaaggtcttaaagaaggacgtcatccttcaggatgatgacgtggactgcacaatgacagagaagaggattttggctctggcacggaaacacccgtaccttacccaactctactgctgcttccagaccaaggaccgcctctttttcgtcatggaatatgtaaatggtggagacctcatgtttcagattcagcgctcccgaaaattcgacgagcctcgttcacggttctatgctgcagaggtcacatcggccctcatgttcctccaccagcatggagtcatctacagCCCAATGATGATCATTACTCAGAAGATCACTAGTTTGGCTTGCGAAATTCATGATGGGATGTTTCGGAAGGATGAAGAACTGACTTCCTCACAGAGGGATTTAGCTGTAAGGCGCATGCCAAGCTTACTGGAGTATTTGAGTTACAACTGTAACTTCATGGGGATCCTGGCAGGCCCACTTTGCTCTTACAAAGACTACATTACTTTCATTGAAGGCAGATCATACCATATCACACAATCTGGTGAAAATGGAAAAGAAGAGACACAGTATGAAAGAACAGAGCCATCTCCAAATACTGCGGTTGTTCAGAAGCTCTTAGTTTGTGGGCTGTCCTTGTTATTTCACTTGACCATCTGTACAACATTACCTGTGGAGTACAACATTGATGAGCATTTTCAAGCTACAGCTTCGTGGCCAACAAAGATTATCTATCTGTATATCTCTCTTTTGGCTGCCAGACCCAAATACTATTTTGCATGGACGCTAGCTGATGCCATTAATAATGCTGCAGGCTTTGGTTTCAGAGGGTATGACGAAAATGGAGCAGCTCGCTGGGACTTAATTTCCAATTTGAGAATTCAACAAATAGAGATGTCAACAAGTTTCAAGATGTTTCTTGATAATTGGAATATTCAGACAGCTCTTTGGCTCAAAAGGGTGTGTTATGAACGAACCTCCTTCAGTCCAACTATCCAGACGTTCATTCTCTCTGCCATTTGGCACGGGGTATACCCAGGATATTATCTAACGTTTCTAACAGGGGTGTTAATGACATTAGCAGCAAGAGCTATGAGAAATAACTTTAGACATTATTTCATTGAACCTTCCCAACTGAAATTATTTTATGATGTTATAACATGGATAGTAACTCAAGTAGCAATAAGTTACACAGTTGTGCCATTTGTGCTTCTTTCTATAAAACCATCACTCACGTTTTACAGCTCCTGGTATTATTGCCTGCACATTCTTGGTATCTTAGTATTATTGTTGTTGCCAGTGAAAAAAACTCAAAGAAGAAAGAATACACATGAAAACATTCAGCTCTCACAATCCAAAAAGTTTGATGAAGGAGAAAATTCTTTGGGACAGAACAGTTTTTCTACAACAAACAATGTTTGCAATCAGAATCAAGAAATAGCCTCGAGACATTCATCACTAAAGCAGTGA MVVFNGLLKIKICEAVSLKPTAWSLRHAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPEGRVYVIIDLSGSSGEAPKDNEERVFRERMRPRKRQGAVRRRVHQVNGHKFMATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITKCAGLKKQETPDQVGSQRFSVNMPHKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRCETNVAPNCGVDARGIAKVLADLGVTPDKITNSGQRRKKLIAGAESPQPASGSSPSEEDRSKSAPTSPCDQEIKELENNIRKALSFDNRGEEHRAASSPDGQLMSPGENGEVRQGQAKRLGLDEFNFIKVLGKGSFGKVMLAELKGKDEVYAVKVLKKDVILQDDDVDCTMTEKRILALARKHPYLTQLYCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTSALMFLHQHGVIYSPMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVRRMPSLLEYLSYNCNFMGILAGPLCSYKDYITFIEGRSYHITQSGENGKEETQYERTEPSPNTAVVQKLLVCGLSLLFHLTICTTLPVEYNIDEHFQATASWPTKIIYLYISLLAARPKYYFAWTLADAINNAAGFGFRGYDENGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERTSFSPTIQTFILSAIWHGVYPGYYLTFLTGVLMTLAARAMRNNFRHYFIEPSQLKLFYDVITWIVTQVAISYTVVPFVLLSIKPSLTFYSSWYYCLHILGILVLLLLPVKKTQRRKNTHENIQLSQSKKFDEGENSLGQNSFSTTNNVCNQNQEIASRHSSLKQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29260 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39917330:- chr17:38060848-38076107:- chr17:38073583:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.45Mb] 15 15 15 4.87 ONLY_REF_SPLICE YES_LDAS 0.2056 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29262 HMGXB3::PPARGC1B ENSG00000113716.13::ENSG00000155846.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 544 TRUE 999 TRUE 367 HMGXB3 ENSG00000113716.13 protein_coding + + chr5:150000046-150053142:+ chr5:150027117:+ chr5:149379609-149432705:+ chr5:149406680:+ PPARGC1B ENSG00000155846.17 protein_coding + + chr5:149730298-149855022:+ chr5:149830767:+ chr5:149109861-149234585:+ chr5:149210330:+ chr5:150028823,chr5:150028820 chr5:149830721,chr5:149830715 NA NA chr5:149408386,chr5:149408383 chr5:149210284,chr5:149210278 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HMG_box_2|286-349|3.2e-16^HMG_box|288-346|1.9e-14^CxC4|567-587|1.2^Vps36-NZF-N|572-583|0.2^Vps36-NZF-N|791-805|0.24^Vps36-NZF-N|879-908|0.0092^CxC4|981-1104|1.8e-18^Vps36-NZF-N|1129-1145|0.0021 Pox_Ag35|785-835|0.027^CDC45|790-881|0.002^BSP_II|794-827|0.004^FAM176|806-848|0.011^CCD97-like_C|807-827|0.0013^RRM_1|904-955|1.7e-11 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.15Mb] 14 23 14 16.97 ONLY_REF_SPLICE YES_LDAS 0.3205 GT 1.8295 AG 1.9219 ENST00000613459.4 1-2472 ENST00000309241.10 466-3072 chr5|+|[0]150000046-150000055[0]|[1]150000454-150001179[0]|[1]150004851-150004989[1]|[2]150006473-150006647[2]|[0]150010111-150010608[2]|[0]150012255-150012353[2]|[0]150018566-150018697[2]|[0]150024262-150024680[1]|[2]150026706-150026881[0]|[1]150027020-150027117[2]<==>chr5|+|[0]149830767-149830883[2]|[0]149832656-149833778[0]|[1]149834674-149834710[1]|[2]149835301-149835365[0]|[1]149836263-149837073[1]|[2]149840041-149840116[2]|[0]149842256-149842377[1]|[2]149845760-149845914[0]|[1]149847458-149847558[2] atgcagagaacacagccccgcccctgttacctgaacgccccacagcagtgcccgggggctgagcggccggggcgtcccaccgccggcagccacagcttcctcctccgcccgggacctctggccggaagcagtccgttcgccttactagacccgctccaagcctttgagcagttcgtgtgggtccgctcccaagctagggctgggctgttgcgcttgcgccaggggtcgcatgcagtcacgcgctgccgaccgcttccggtgcgccgcgagggccgccgggacgggtctccctggcgatccgtggtgtgccgctactgccggtgcagccgccaaaccggtgcctcggtgacgaccgtgtccctgccgtcttcctcgagctccccggggcttgacccccggggccctcggcaggcatcggtgaggagcctgcggagcgaacctgtgctcctattcttgcccttcaggaccccatatcgcgactccgaggaggggaagcgagaggggctgtcgcgactccgcgccgtgtgtcgccgggcggggccgcggggccggggctccttcagcccccgggatgcgcgcgcgagccctcgcctccacttccttgttgctgctgtcacgactggagccgcctctcgccgacagcggggagcgcgagtgcgccagccatccccctcgtccagccgccgggccaagcgcctccgggaatgtgagcggcgcagcttgcacgctcctccggccatggacgcatcatatgatggtactgaggtaactgtcgtgatggaggaaattgaggaagcctattgttacacctctcctgggccacccaagaagaagaaaaagtataaaatacatggagaaaagacaaagaaacccaggtctgcttaccttctgtactattacgacatctacctgaaagtgcagcaggagctcccccacctccctcagtctgagatcaataagaagattagtgagagttggaggcttctcagcgtggccgagaggagttactacttggagaaagccaaactagagaaggaaggtttggatcctaactctaagctctctgcactgactgctgtggttccggacatcccaggtttccgcaagatcctcccacgctcagattatatcatcatccccaagagcagcctgcaggaggaccggagctgccctcagctagagctatgtgtggctcagaaccagatgtccccgaaaggacctcctcttgtgtccaacactgccccggagacagtgcccagccatgcaggcatggcagagcagtgcctggctgtggaggccctggctgaggaggtgggagcccttacccagtcaggtgctgtacaggagattgccacctcagagatcctcagccaggatgtgctcctagaggacgcttccctagaagtaggggagagccaccaaccttaccagacaagcctggtaattgaagagaccttggtgaatggctcaccagacctccccactggaagcctggctgtgccccacccccaggttggggagagtgtatcagtggtaacagtcatgagggattccagtgagagtagctcctctgcaccagccacacagttcatcatgttgcctctgcctgcctactcggttgtggagaaccccacctccatcaaactgaccactacatatacccgccggggccatgggacatgcaccagcccagggtgctcctttacatatgtcaccaggcacaagccacctaagtgccctacctgtggtaacttcctaggagggaagtggatcccaaaggaaaagccagccaaagtaaaagtggaattggcttctggcgtctcttccaaaggctctgtggtgaaaagaaatcagcaacctgtcaccactgagcaaaattcctctaaggaaaatgcctccaaactgactctggagaattcggaagctgtaagccagctcctgaacgtagctcctcccagagaagtaggtgaggagagtgagtgggaggaagtgatcatctccgatgcccatgttttggttaaggaagctcccgggaattgtggtacagcagtcactaagacgccagtcgtcaaaagtggtgtgcagcctgaggtcactctggggacaactgacaatgacagtcctggagcagacgtaccaacaccatccgaggggacaagtacctccagtccactccctgctcctaaaaaacctacaggagctgacctgcttacccctgggtccagagctccagagcttaaaggcagagcacggggcaagccctcattactggctgcagcaagacccatgagagcaattttgccagccccagttaacgtggggcgaggcagcagcatgggactgcccagggccaggcaggccttttccctgagtgataagactccctctgtgaggacttgtggtctgaagccaagcacactgaagcagctgggccagcccattcaacagccatctggccctggtgaggtgaagCTGCAGAAGCTCCTCCTGGCCACATCCTACCCAACATCAAGCTCTGACACCCAGAAGGAAGGGACCGCCTGGCGCCAGGCAGGCCTCAGATCTAAAAGTCAACGGCCTTGTGTTAAGGCGGACAGCACCCAAGACAAGAAGGCTCCCATGATGCAGTCTCAGAGCCGAAGTTGTACAGAACTACATAAGCACCTCACCTCGGCACAGTGCTGCCTGCAGGATCGGGGTCTGCAGCCACCATGCCTCCAGAGTCCCCGGCTCCCTGCCAAGGAGGACAAGGAGCCGGGTGAGGACTGCCCGAGCCCCCAGCCAGCTCCAGCCTCTCCCCGGGACTCCCTAGCTCTGGGCAGGGCAGACCCCGGTGCCCCGGTTTCCCAGGAAGACATGCAGGCGATGGTGCAACTCATACGCTACATGCACACCTACTGCCTCCCCCAGAGGAAGCTGCCCCCACAGACCCCTGAGCCACTCCCCAAGGCCTGCAGCAACCCCTCCCAGCAGGTCAGATCCCGGCCCTGGTCCCGGCACCACTCCAAAGCCTCCTGGGCTGAGTTCTCCATTCTGAGGGAACTTCTGGCTCAAGACGTGCTCTGTGATGTCAGCAAACCCTACCGTCTGGCCACGCCTGTTTATGCCTCCCTCACACCTCGGTCAAGGCCCAGGCCCCCCAAAGACAGTCAGGCCTCCCCTGGTCGCCCGTCCTCGGTGGAGGAGGTAAGGATCGCAGCTTCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACTGCGGCTGGAGGTGAAAAGGGAGGTCCGCCGGCCTGCCAGACTGCAGCAGCAGGAGGAGGAAGACGAGGAAGAAGAGGAGGAGGAAGAGGAAGAAGAAAAAGAGGAGGAGGAGGAGTGGGGCAGGAAAAGGCCAGGCCGAGGCCTGCCATGGACGAAGCTGGGGAGGAAGCTGGAGAGCTCTGTGTGCCCCGTGCGGCGTTCTCGGAGACTGAACCCTGAGCTGGGCCCCTGGCTGACATTTGCAGATGAGCCGCTGGTCCCCTCGGAGCCCCAAGGTGCTCTGCCCTCACTGTGCCTGGCTCCCAAGGCCTACGACGTAGAGCGGGAGCTGGGCAGCCCCACGGACGAGGACAGTGGCCAAGACCAGCAGCTCCTACGGGGACCCCAGATCCCTGCCCTGGAGAGCCCCTGTGAGAGTGGGTGTGGGGACATGGATGAGGACCCCAGCTGCCCGCAGCTCCCTCCCAGAGACTCTCCCAGGTGCCTCATGCTGGCCTTGTCACAAAGCGACCCAACTTTTGGCAAGAAGAGCTTTGAGCAGACCTTGACAGTGGAGCTCTGTGGCACAGCAGGACTCACCCCACCCACCACACCACCGTACAAGCCCACAGAGGAGGATCCCTTCAAACCAGACATCAAGCATAGTCTAGGCAAAGAAATAGCTCTCAGCCTCCCCTCCCCTGAGGGCCTCTCACTCAAGGCCACCCCAGGGGCTGCCCACAAGCTGCCAAAGAAGCACCCAGAGCGAAGTGAGCTCCTGTCCCACCTGCGACATGCCACAGCCCAGCCAGCCTCCCAGGCTGGCCAGAAGCGTCCCTTCTCCTGTTCCTTTGGAGACCATGACTACTGCCAGGTGCTCCGACCAGAAGGCGTCCTGCAAAGGAAGGTGCTGAGGTCCTGGGAGCCGTCTGGGGTTCACCTTGAGGACTGGCCCCAGCAGGGTGCCCCTTGGGCTGAGGCACAGGCCCCTGGCAGGGAGGAAGACAGAAGCTGTGATGCTGGCGCCCCACCCAAGGACAGCACGCTGCTGAGAGACCATGAGATCCGTGCCAGCCTCACCAAACACTTTGGGCTGCTGGAGACCGCCCTGGAGGAGGAAGACCTGGCCTCCTGCAAGAGCCCTGAGTATGACACTGTCTTTGAAGACAGCAGCAGCAGCAGCGGCGAGAGCAGCTTCCTCCCAGAGGAGGAAGAGGAAGAAGGGGAGGAGGAGGAGGAGGACGATGAAGAAGAGGACTCAGGGGTCAGCCCCACTTGCTCTGACCACTGCCCCTACCAGAGCCCACCAAGCAAGGCCAACCGGCAGCTCTGTTCCCGCAGCCGCTCAAGCTCTGGCTCTTCACCCTGCCACTCCTGGTCACCAGCCACTCGAAGGAACTTCAGATGTGAGAGCAGAGGGCCGTGTTCAGACAGAACGCCAAGCATCCGGCACGCCAGGAAGCGGCGGGAAAAGGCCATTGGGGAAGGCCGCGTGGTGTACATTCAAAATCTCTCCAGCGACATGAGCTCCCGAGAGCTGAAGAGGCGCTTTGAAGTGTTTGGTGAGATTGAGGAGTGCGAGGTGCTGACAAGAAATAGGAGAGGCGAGAAGTACGGCTTCATCACCTACCGGTGTTCTGAGCACGCGGCCCTCTCTTTGACAAAGGGCGCTGCCCTGAGGAAGCGCAACGAGCCCTCCTTCCAGCTGAGCTACGGAGGGCTCCGGCACTTCTGCTGGCCCAGATACACTGACTACGATTCCAATTCAGAAGAGGCCCTTCCTGCGTCAGGGAAAAGCAAGTATGAAGCCATGGATTTTGACAGCTTACTGAAAGAGGCCCAGCAGAGCCTGCATTGA MQRTQPRPCYLNAPQQCPGAERPGRPTAGSHSFLLRPGPLAGSSPFALLDPLQAFEQFVWVRSQARAGLLRLRQGSHAVTRCRPLPVRREGRRDGSPWRSVVCRYCRCSRQTGASVTTVSLPSSSSSPGLDPRGPRQASVRSLRSEPVLLFLPFRTPYRDSEEGKREGLSRLRAVCRRAGPRGRGSFSPRDARASPRLHFLVAAVTTGAASRRQRGARVRQPSPSSSRRAKRLRECERRSLHAPPAMDASYDGTEVTVVMEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSSLQEDRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAEQCLAVEALAEEVGALTQSGAVQEIATSEILSQDVLLEDASLEVGESHQPYQTSLVIEETLVNGSPDLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAPATQFIMLPLPAYSVVENPTSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASGVSSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVIISDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSSPLPAPKKPTGADLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVKLQKLLLATSYPTSSSDTQKEGTAWRQAGLRSKSQRPCVKADSTQDKKAPMMQSQSRSCTELHKHLTSAQCCLQDRGLQPPCLQSPRLPAKEDKEPGEDCPSPQPAPASPRDSLALGRADPGAPVSQEDMQAMVQLIRYMHTYCLPQRKLPPQTPEPLPKACSNPSQQVRSRPWSRHHSKASWAEFSILRELLAQDVLCDVSKPYRLATPVYASLTPRSRPRPPKDSQASPGRPSSVEEVRIAASPKSTGPRPSLRPLRLEVKREVRRPARLQQQEEEDEEEEEEEEEEEKEEEEEWGRKRPGRGLPWTKLGRKLESSVCPVRRSRRLNPELGPWLTFADEPLVPSEPQGALPSLCLAPKAYDVERELGSPTDEDSGQDQQLLRGPQIPALESPCESGCGDMDEDPSCPQLPPRDSPRCLMLALSQSDPTFGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQKRPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGVHLEDWPQQGAPWAEAQAPGREEDRSCDAGAPPKDSTLLRDHEIRASLTKHFGLLETALEEEDLASCKSPEYDTVFEDSSSSSGESSFLPEEEEEEGEEEEEDDEEEDSGVSPTCSDHCPYQSPPSKANRQLCSRSRSSSGSSPCHSWSPATRRNFRCESRGPCSDRTPSIRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYGFITYRCSEHAALSLTKGAALRKRNEPSFQLSYGGLRHFCWPRYTDYDSNSEEALPASGKSKYEAMDFDSLLKEAQQSLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Bladder exact TRUE Bladder Urothelial Carcinoma BLADDER no_match 149412166 FALSE 149227021 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29263 ENSG00000228629::LSR ENSG00000228629.2::ENSG00000105699.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 551 FALSE NA FALSE NA ENSG00000228629 ENSG00000228629.2 lncRNA + + chr19:36528318-36535235:+ chr19:36534992:+ chr19:37019220-37026137:+ chr19:37025894:+ LSR ENSG00000105699.17 protein_coding + + chr19:35248330-35267964:+ chr19:35258945:+ chr19:35739233-35758867:+ chr19:35749848:+ chr19:36535401,chr19:36535399 chr19:35252239,chr19:35252234 NA NA chr19:37026303,chr19:37026301 chr19:35743142,chr19:35743137 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 13 5 13 5 ONLY_REF_SPLICE YES_LDAS 0.1862 GT 0.9968 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29269 HMGXB3::PPARGC1B ENSG00000113716.13::ENSG00000155846.17 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 545 TRUE 999 TRUE 367 HMGXB3 ENSG00000113716.13 protein_coding + + chr5:150000046-150053142:+ chr5:150027117:+ chr5:149379609-149432705:+ chr5:149406680:+ PPARGC1B ENSG00000155846.17 protein_coding + + chr5:149730298-149855022:+ chr5:149832656:+ chr5:149109861-149234585:+ chr5:149212219:+ chr5:150028823,chr5:150028820 chr5:149830721,chr5:149830715 NA NA chr5:149408386,chr5:149408383 chr5:149210284,chr5:149210278 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HMG_box_2|286-349|3.2e-16^HMG_box|288-346|1.9e-14^CxC4|567-587|1.2^Vps36-NZF-N|572-583|0.2^Vps36-NZF-N|791-805|0.24^Vps36-NZF-N|879-908|0.0092^CxC4|981-1104|1.8e-18^Vps36-NZF-N|1129-1145|0.0021 Pox_Ag35|746-796|0.03^CDC45|751-842|0.0022^BSP_II|755-788|0.0044^Spore_coat_CotO|755-785|0.35^FAM176|767-809|0.012^CCD97-like_C|768-788|0.0013^RRM_1|865-916|1.9e-11 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.15Mb] 11 17 11 6.03 ONLY_REF_SPLICE YES_LDAS 0.1762 GT 1.8295 AG 1.5656 ENST00000613459.4 1-2472 ENST00000360453.8 466-2955 chr5|+|[0]150000046-150000055[0]|[1]150000454-150001179[0]|[1]150004851-150004989[1]|[2]150006473-150006647[2]|[0]150010111-150010608[2]|[0]150012255-150012353[2]|[0]150018566-150018697[2]|[0]150024262-150024680[1]|[2]150026706-150026881[0]|[1]150027020-150027117[2]<==>chr5|+|[0]149832656-149833778[0]|[1]149834674-149834710[1]|[2]149835301-149835365[0]|[1]149836263-149837073[1]|[2]149840041-149840116[2]|[0]149842256-149842377[1]|[2]149845760-149845914[0]|[1]149847458-149847558[2] atgcagagaacacagccccgcccctgttacctgaacgccccacagcagtgcccgggggctgagcggccggggcgtcccaccgccggcagccacagcttcctcctccgcccgggacctctggccggaagcagtccgttcgccttactagacccgctccaagcctttgagcagttcgtgtgggtccgctcccaagctagggctgggctgttgcgcttgcgccaggggtcgcatgcagtcacgcgctgccgaccgcttccggtgcgccgcgagggccgccgggacgggtctccctggcgatccgtggtgtgccgctactgccggtgcagccgccaaaccggtgcctcggtgacgaccgtgtccctgccgtcttcctcgagctccccggggcttgacccccggggccctcggcaggcatcggtgaggagcctgcggagcgaacctgtgctcctattcttgcccttcaggaccccatatcgcgactccgaggaggggaagcgagaggggctgtcgcgactccgcgccgtgtgtcgccgggcggggccgcggggccggggctccttcagcccccgggatgcgcgcgcgagccctcgcctccacttccttgttgctgctgtcacgactggagccgcctctcgccgacagcggggagcgcgagtgcgccagccatccccctcgtccagccgccgggccaagcgcctccgggaatgtgagcggcgcagcttgcacgctcctccggccatggacgcatcatatgatggtactgaggtaactgtcgtgatggaggaaattgaggaagcctattgttacacctctcctgggccacccaagaagaagaaaaagtataaaatacatggagaaaagacaaagaaacccaggtctgcttaccttctgtactattacgacatctacctgaaagtgcagcaggagctcccccacctccctcagtctgagatcaataagaagattagtgagagttggaggcttctcagcgtggccgagaggagttactacttggagaaagccaaactagagaaggaaggtttggatcctaactctaagctctctgcactgactgctgtggttccggacatcccaggtttccgcaagatcctcccacgctcagattatatcatcatccccaagagcagcctgcaggaggaccggagctgccctcagctagagctatgtgtggctcagaaccagatgtccccgaaaggacctcctcttgtgtccaacactgccccggagacagtgcccagccatgcaggcatggcagagcagtgcctggctgtggaggccctggctgaggaggtgggagcccttacccagtcaggtgctgtacaggagattgccacctcagagatcctcagccaggatgtgctcctagaggacgcttccctagaagtaggggagagccaccaaccttaccagacaagcctggtaattgaagagaccttggtgaatggctcaccagacctccccactggaagcctggctgtgccccacccccaggttggggagagtgtatcagtggtaacagtcatgagggattccagtgagagtagctcctctgcaccagccacacagttcatcatgttgcctctgcctgcctactcggttgtggagaaccccacctccatcaaactgaccactacatatacccgccggggccatgggacatgcaccagcccagggtgctcctttacatatgtcaccaggcacaagccacctaagtgccctacctgtggtaacttcctaggagggaagtggatcccaaaggaaaagccagccaaagtaaaagtggaattggcttctggcgtctcttccaaaggctctgtggtgaaaagaaatcagcaacctgtcaccactgagcaaaattcctctaaggaaaatgcctccaaactgactctggagaattcggaagctgtaagccagctcctgaacgtagctcctcccagagaagtaggtgaggagagtgagtgggaggaagtgatcatctccgatgcccatgttttggttaaggaagctcccgggaattgtggtacagcagtcactaagacgccagtcgtcaaaagtggtgtgcagcctgaggtcactctggggacaactgacaatgacagtcctggagcagacgtaccaacaccatccgaggggacaagtacctccagtccactccctgctcctaaaaaacctacaggagctgacctgcttacccctgggtccagagctccagagcttaaaggcagagcacggggcaagccctcattactggctgcagcaagacccatgagagcaattttgccagccccagttaacgtggggcgaggcagcagcatgggactgcccagggccaggcaggccttttccctgagtgataagactccctctgtgaggacttgtggtctgaagccaagcacactgaagcagctgggccagcccattcaacagccatctggccctggtgaggtgaagGCGGACAGCACCCAAGACAAGAAGGCTCCCATGATGCAGTCTCAGAGCCGAAGTTGTACAGAACTACATAAGCACCTCACCTCGGCACAGTGCTGCCTGCAGGATCGGGGTCTGCAGCCACCATGCCTCCAGAGTCCCCGGCTCCCTGCCAAGGAGGACAAGGAGCCGGGTGAGGACTGCCCGAGCCCCCAGCCAGCTCCAGCCTCTCCCCGGGACTCCCTAGCTCTGGGCAGGGCAGACCCCGGTGCCCCGGTTTCCCAGGAAGACATGCAGGCGATGGTGCAACTCATACGCTACATGCACACCTACTGCCTCCCCCAGAGGAAGCTGCCCCCACAGACCCCTGAGCCACTCCCCAAGGCCTGCAGCAACCCCTCCCAGCAGGTCAGATCCCGGCCCTGGTCCCGGCACCACTCCAAAGCCTCCTGGGCTGAGTTCTCCATTCTGAGGGAACTTCTGGCTCAAGACGTGCTCTGTGATGTCAGCAAACCCTACCGTCTGGCCACGCCTGTTTATGCCTCCCTCACACCTCGGTCAAGGCCCAGGCCCCCCAAAGACAGTCAGGCCTCCCCTGGTCGCCCGTCCTCGGTGGAGGAGGTAAGGATCGCAGCTTCACCCAAGAGCACCGGGCCCAGACCAAGCCTGCGCCCACTGCGGCTGGAGGTGAAAAGGGAGGTCCGCCGGCCTGCCAGACTGCAGCAGCAGGAGGAGGAAGACGAGGAAGAAGAGGAGGAGGAAGAGGAAGAAGAAAAAGAGGAGGAGGAGGAGTGGGGCAGGAAAAGGCCAGGCCGAGGCCTGCCATGGACGAAGCTGGGGAGGAAGCTGGAGAGCTCTGTGTGCCCCGTGCGGCGTTCTCGGAGACTGAACCCTGAGCTGGGCCCCTGGCTGACATTTGCAGATGAGCCGCTGGTCCCCTCGGAGCCCCAAGGTGCTCTGCCCTCACTGTGCCTGGCTCCCAAGGCCTACGACGTAGAGCGGGAGCTGGGCAGCCCCACGGACGAGGACAGTGGCCAAGACCAGCAGCTCCTACGGGGACCCCAGATCCCTGCCCTGGAGAGCCCCTGTGAGAGTGGGTGTGGGGACATGGATGAGGACCCCAGCTGCCCGCAGCTCCCTCCCAGAGACTCTCCCAGGTGCCTCATGCTGGCCTTGTCACAAAGCGACCCAACTTTTGGCAAGAAGAGCTTTGAGCAGACCTTGACAGTGGAGCTCTGTGGCACAGCAGGACTCACCCCACCCACCACACCACCGTACAAGCCCACAGAGGAGGATCCCTTCAAACCAGACATCAAGCATAGTCTAGGCAAAGAAATAGCTCTCAGCCTCCCCTCCCCTGAGGGCCTCTCACTCAAGGCCACCCCAGGGGCTGCCCACAAGCTGCCAAAGAAGCACCCAGAGCGAAGTGAGCTCCTGTCCCACCTGCGACATGCCACAGCCCAGCCAGCCTCCCAGGCTGGCCAGAAGCGTCCCTTCTCCTGTTCCTTTGGAGACCATGACTACTGCCAGGTGCTCCGACCAGAAGGCGTCCTGCAAAGGAAGGTGCTGAGGTCCTGGGAGCCGTCTGGGGTTCACCTTGAGGACTGGCCCCAGCAGGGTGCCCCTTGGGCTGAGGCACAGGCCCCTGGCAGGGAGGAAGACAGAAGCTGTGATGCTGGCGCCCCACCCAAGGACAGCACGCTGCTGAGAGACCATGAGATCCGTGCCAGCCTCACCAAACACTTTGGGCTGCTGGAGACCGCCCTGGAGGAGGAAGACCTGGCCTCCTGCAAGAGCCCTGAGTATGACACTGTCTTTGAAGACAGCAGCAGCAGCAGCGGCGAGAGCAGCTTCCTCCCAGAGGAGGAAGAGGAAGAAGGGGAGGAGGAGGAGGAGGACGATGAAGAAGAGGACTCAGGGGTCAGCCCCACTTGCTCTGACCACTGCCCCTACCAGAGCCCACCAAGCAAGGCCAACCGGCAGCTCTGTTCCCGCAGCCGCTCAAGCTCTGGCTCTTCACCCTGCCACTCCTGGTCACCAGCCACTCGAAGGAACTTCAGATGTGAGAGCAGAGGGCCGTGTTCAGACAGAACGCCAAGCATCCGGCACGCCAGGAAGCGGCGGGAAAAGGCCATTGGGGAAGGCCGCGTGGTGTACATTCAAAATCTCTCCAGCGACATGAGCTCCCGAGAGCTGAAGAGGCGCTTTGAAGTGTTTGGTGAGATTGAGGAGTGCGAGGTGCTGACAAGAAATAGGAGAGGCGAGAAGTACGGCTTCATCACCTACCGGTGTTCTGAGCACGCGGCCCTCTCTTTGACAAAGGGCGCTGCCCTGAGGAAGCGCAACGAGCCCTCCTTCCAGCTGAGCTACGGAGGGCTCCGGCACTTCTGCTGGCCCAGATACACTGACTACGATTCCAATTCAGAAGAGGCCCTTCCTGCGTCAGGGAAAAGCAAGTATGAAGCCATGGATTTTGACAGCTTACTGAAAGAGGCCCAGCAGAGCCTGCATTGA MQRTQPRPCYLNAPQQCPGAERPGRPTAGSHSFLLRPGPLAGSSPFALLDPLQAFEQFVWVRSQARAGLLRLRQGSHAVTRCRPLPVRREGRRDGSPWRSVVCRYCRCSRQTGASVTTVSLPSSSSSPGLDPRGPRQASVRSLRSEPVLLFLPFRTPYRDSEEGKREGLSRLRAVCRRAGPRGRGSFSPRDARASPRLHFLVAAVTTGAASRRQRGARVRQPSPSSSRRAKRLRECERRSLHAPPAMDASYDGTEVTVVMEEIEEAYCYTSPGPPKKKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSSLQEDRSCPQLELCVAQNQMSPKGPPLVSNTAPETVPSHAGMAEQCLAVEALAEEVGALTQSGAVQEIATSEILSQDVLLEDASLEVGESHQPYQTSLVIEETLVNGSPDLPTGSLAVPHPQVGESVSVVTVMRDSSESSSSAPATQFIMLPLPAYSVVENPTSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKPAKVKVELASGVSSKGSVVKRNQQPVTTEQNSSKENASKLTLENSEAVSQLLNVAPPREVGEESEWEEVIISDAHVLVKEAPGNCGTAVTKTPVVKSGVQPEVTLGTTDNDSPGADVPTPSEGTSTSSPLPAPKKPTGADLLTPGSRAPELKGRARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQAFSLSDKTPSVRTCGLKPSTLKQLGQPIQQPSGPGEVKADSTQDKKAPMMQSQSRSCTELHKHLTSAQCCLQDRGLQPPCLQSPRLPAKEDKEPGEDCPSPQPAPASPRDSLALGRADPGAPVSQEDMQAMVQLIRYMHTYCLPQRKLPPQTPEPLPKACSNPSQQVRSRPWSRHHSKASWAEFSILRELLAQDVLCDVSKPYRLATPVYASLTPRSRPRPPKDSQASPGRPSSVEEVRIAASPKSTGPRPSLRPLRLEVKREVRRPARLQQQEEEDEEEEEEEEEEEKEEEEEWGRKRPGRGLPWTKLGRKLESSVCPVRRSRRLNPELGPWLTFADEPLVPSEPQGALPSLCLAPKAYDVERELGSPTDEDSGQDQQLLRGPQIPALESPCESGCGDMDEDPSCPQLPPRDSPRCLMLALSQSDPTFGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDIKHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQKRPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGVHLEDWPQQGAPWAEAQAPGREEDRSCDAGAPPKDSTLLRDHEIRASLTKHFGLLETALEEEDLASCKSPEYDTVFEDSSSSSGESSFLPEEEEEEGEEEEEDDEEEDSGVSPTCSDHCPYQSPPSKANRQLCSRSRSSSGSSPCHSWSPATRRNFRCESRGPCSDRTPSIRHARKRREKAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYGFITYRCSEHAALSLTKGAALRKRNEPSFQLSYGGLRHFCWPRYTDYDSNSEEALPASGKSKYEAMDFDSLLKEAQQSLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Bladder exact TRUE Bladder Urothelial Carcinoma BLADDER no_match 149412166 FALSE 149227021 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29271 KCNS3::WRNIP1 ENSG00000170745.12::ENSG00000124535.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 553 TRUE 1003 TRUE 370 KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17878806:+ chr2:18059114-18542882:+ chr2:18060073:+ WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2779263:+ chr6:2765627-2787186:+ chr6:2779497:+ chr2:17883254,chr2:17883254 chr6:2767743,chr6:2767740 NA NA chr2:18064521,chr2:18064521 chr6:2767977,chr6:2767974 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr6] 9 4 9 1.57 ONLY_REF_SPLICE YES_LDAS 0.1093 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29272 NOS1AP::IFI16 ENSG00000198929.13::ENSG00000163565.20 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NOS1AP ENSG00000198929.13 protein_coding + + chr1:162069691-162370475:+ chr1:162070282:+ chr1:162039481-162340265:+ chr1:162040072:+ IFI16 ENSG00000163565.20 protein_coding + + chr1:158999968-159055155:+ chr1:159010003:+ chr1:158969758-159024945:+ chr1:158979793:+ chr1:162073425,chr1:162073423 chr1:159003286,chr1:159003281 NA NA chr1:162043215,chr1:162043213 chr1:158973076,chr1:158973071 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:3.01Mb] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1448 GT 1.9656 AG 1.371 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29273 ADAM9::DDHD2 ENSG00000168615.13::ENSG00000085788.14 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ADAM9 ENSG00000168615.13 protein_coding + + chr8:38996754-39105445:+ chr8:38997160:+ chr8:38854273-38962964:+ chr8:38854679:+ DDHD2 ENSG00000085788.14 protein_coding + + chr8:38225218-38275558:+ chr8:38273370:+ chr8:38082736-38133076:+ chr8:38130888:+ chr8:39006205,chr8:39006206 chr8:38268377,chr8:38268375 NA NA chr8:38863724,chr8:38863725 chr8:38125895,chr8:38125893 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ADAM9:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.72Mb] 9 17 9 11.77 ONLY_REF_SPLICE YES_LDAS 0.2149 GT 1.5329 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29275 KCNS3::WRNIP1 ENSG00000170745.12::ENSG00000124535.16 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 552 TRUE 1003 TRUE 370 KCNS3 ENSG00000170745.12 protein_coding + + chr2:17877847-18361616:+ chr2:17878806:+ chr2:18059114-18542882:+ chr2:18060073:+ WRNIP1 ENSG00000124535.16 protein_coding + + chr6:2765393-2786952:+ chr6:2768691:+ chr6:2765627-2787186:+ chr6:2768925:+ chr2:17883254,chr2:17883254 chr6:2767743,chr6:2767740 NA NA chr2:18064521,chr2:18064521 chr6:2767977,chr6:2767974 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr6] 7 11 7 9.43 ONLY_REF_SPLICE YES_LDAS 0.17 GT 1.8892 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29276 RNF111::TCF12 ENSG00000157450.16::ENSG00000140262.18 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 533 TRUE 991 TRUE 365 RNF111 ENSG00000157450.16 protein_coding + + chr15:58865175-59097419:+ chr15:59004174:+ chr15:59157374-59389618:+ chr15:59296373:+ TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57192158:+ chr15:57210821-57591479:+ chr15:57484356:+ chr15:59004745,chr15:59004743 chr15:57169752,chr15:57169747 NA NA chr15:59296944,chr15:59296942 chr15:57461950,chr15:57461945 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RNF111_N-PARTIAL|41-50~|4e-46 HLH|397-430|0.074^HLH|427-441|0.12^Hid1|513-685|0.0012^HLH|602-655|1.5e-14 ["TCF12:Oncogene"];["TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:1.69Mb] 5 37 5 7 ONLY_REF_SPLICE YES_LDAS 0.1241 GT 1.7819 AG 1.9656 ENST00000559160.1 1-50 ENST00000333725.10 391-2121 chr15|+|[0]59004125-59004174[1]<==>chr15|+|[0]57192158-57192293[0]|[1]57197773-57197825[2]|[0]57231152-57231257[0]|[1]57232291-57232430[2]|[0]57232712-57232856[0]|[1]57234043-57234107[2]|[0]57243472-57243550[0]|[1]57251350-57251423[2]|[0]57252421-57252492[2]|[0]57253262-57253468[2]|[0]57262094-57262208[0]|[1]57263112-57263274[1]|[2]57273030-57273262[0]|[1]57282445-57282587[2] atgcatgttttttccctcatagatggcagttctggattagcagttttaagTCTAGTCTCCTGAGACAAGATCTGGGGCTTGGGAGCCCAGCACAGCTATCTTCTTCAGGAAAACCTGGGACAGCATACTATTCATTCTCTGCTACAAGTTCCAGGAGGAGACCACTCCATGACTCTGCAGCGCTTGATCCCTTGCAAGCAAAAAAAGTCAGAAAGGTGCCTCCTGGTTTGCCTTCTTCTGTATATGCACCATCCCCAAATTCAGATGATTTCAACCGTGAATCTCCTAGTTATCCATCTCCTAAGCCACCAACCAGTATGTTCGCTAGCACTTTCTTTATGCAAGATGGGACCCACAATTCTTCTGACCTTTGGAGTTCATCAAATGGGATGAGCCAGCCTGGTTTTGGTGGAATTCTGGGGACCTCCACTTCCCACATGTCTCAATCCAGTAGTTATGGCAACCTTCATTCACATGACCGCTTGAGTTATCCTCCACACTCAGTTTCACCAACAGACATAAACACGAGTCTTCCACCAATGTCCAGCTTTCATCGCGGCAGTACCAGCAGTTCACCTTACGTTGCTGCCTCACACACTCCTCCCATCAATGGATCAGACAGCATTCTAGGAACCAGAGGGAATGCTGCTGGAAGCTCACAGACAGGTGATGCACTTGGAAAGGCTTTGGCATCTATTTATTCTCCTGACCATACCAGCAGTAGTTTTCCGTCAAATCCATCAACACCAGTTGGATCACCTTCACCTCTCACAGGTACCAGTCAGTGGCCAAGACCTGGAGGGCAAGCACCTTCATCCCCAAGCTATGAAAACTCACTCCACTCCCTGAAAAATCGAGTTGAGCAGCAACTTCACGAGCATTTGCAAGATGCAATGTCCTTCTTAAAGGATGTCTGTGAGCAGTCTCGAATGGAGGATCGTTTAGACAGACTGGATGATGCAATCCATGTGCTGCGGAACCATGCTGTGGGACCTTCCACCAGTTTGCCTGCTGGTCACAGTGATATACATAGTTTATTGGGACCATCCCATAATGCACCAATTGGAAGCCTCAATTCAAACTATGGAGGATCAAGCCTTGTTGCAAGCAGTCGATCAGCTTCAATGGTTGGAACTCATCGGGAAGACTCTGTCAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCATAAAACACAAGAAAATTATAGAGGTGGCTTGCAAAGTCAGTCTGGAACTGTTGTTACAACAGAAATCAAGACTGAAAACAAAGAAAAGGATGAAAACCTTCATGAACCTCCTTCATCAGATGACATGAAGTCAGATGATGAATCCTCCCAAAAAGATATCAAGGTTTCATCTAGAGGCAGAACAAGCAGTACTAATGAAGATGAGGATTTGAACCCTGAACAGAAGATAGAAAGGGAGAAGGAGAGGCGGATGGCTAACAATGCCAGAGAACGCTTACGCGTGCGGGATATTAATGAAGCATTCAAAGAGCTTGGCCGAATGTGTCAGCTTCACTTGAAGAGTGAAAAACCCCAAACAAAACTCCTTATTCTTCATCAAGCCGTGGCAGTCATCCTTAGTCTAGAACAGCAAGTCAGAGAGAGGAACCTTAACCCCAAAGCAGCCTGCCTTAAGAGAAGGGAAGAAGAAAAAGTTTCTGCCGTATCGGCAGAGCCGCCAACCACACTGCCAGGAACCCATCCTGGGCTTAGTGAAACTACCAACCCTATGGGTCATATGTAA MHVFSLIDGSSGLAVLSLVS*DKIWGLGAQHSYLLQENLGQHTIHSLLQVPGGDHSMTLQRLIPCKQKKSERCLLVCLLLYMHHPQIQMISTVNLLVIHLLSHQPVCSLALSLCKMGPTILLTFGVHQMG*ASLVLVEFWGPPLPTCLNPVVMATFIHMTA*VILHTQFHQQT*TRVFHQCPAFIAAVPAVHLTLLPHTLLPSMDQTAF*EPEGMLLEAHRQVMHLERLWHLFILLTIPAVVFRQIHQHQLDHLHLSQVPVSGQDLEGKHLHPQAMKTHSTP*KIELSSNFTSICKMQCPS*RMSVSSLEWRIV*TDWMMQSMCCGTMLWDLPPVCLLVTVIYIVYWDHPIMHQLEASIQTMEDQALLQAVDQLQWLELIGKTLSVSMAIIQSCLVQSLLQAQT*TIKHKKIIEVACKVSLELLLQQKSRLKTKKRMKTFMNLLHQMT*SQMMNPPKKISRFHLEAEQAVLMKMRI*TLNRR*KGRRRGGWLTMPENAYACGILMKHSKSLAECVSFT*RVKNPKQNSLFFIKPWQSSLV*NSKSERGTLTPKQPALREGKKKKFLPYRQSRQPHCQEPILGLVKLPTLWVIC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER exact 59359282,59280267 FALSE,FALSE 57383987,57565228 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation 29277 MED1::GSDMB ENSG00000125686.12::ENSG00000073605.19 HCC38 SRR8615458 SRR8639157 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 998 TRUE 366 MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39918242:- chr17:38060848-38076107:- chr17:38074495:- chr17:39437624,chr17:39437809 chr17:39919389,chr17:39919745 NA NA chr17:37593877,chr17:37594062 chr17:38075642,chr17:38075998 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.45Mb] 4 19 4 6.6 INCL_NON_REF_SPLICE YES_LDAS 0.1097 GT 1.9656 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 37575970|37575970|37575970 FALSE|FALSE|FALSE 38062524|38063240|38062238 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29287 PIK3C2A::USH1C ENSG00000011405.14::ENSG00000006611.17 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 560 FALSE NA FALSE NA PIK3C2A ENSG00000011405.14 protein_coding - - chr11:17077730-17207986:- chr11:17110432:- chr11:17099277-17229533:- chr11:17131979:- USH1C ENSG00000006611.17 protein_coding - - chr11:17493895-17544416:- chr11:17516290:- chr11:17515442-17565963:- chr11:17537837:- chr11:17105653,chr11:17105655 chr11:17517227,chr11:17517226 NA NA chr11:17127200,chr11:17127202 chr11:17538774,chr11:17538773 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PI3K_C2|252-272|4.1^PI3Ka|288-313|0.32^PI3K_rbd|412-511|2.2e-34^PI3K_C2|703-840|1.6e-33^C2|740-769|1.8^PI3Ka|868-1041|8.7e-46^PI3_PI4_kinase|1133-1346|9.4e-75^DUF4135|1219-1275|3.7e-05^PX|1455-1533|2.4e-18^C2|1572-1680|4.1e-22^PI3K_C2|1595-1669|0.0086 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.29Mb] 18 7 18 6.17 ONLY_REF_SPLICE YES_LDAS 0.2269 GT 1.8892 AG 1.4716 ENST00000265970.11 1-3544 ENST00000005226.12 1211-2700 chr11|-|[0]17110432-17110561[0]|[2]17112574-17112666[0]|[2]17114361-17114465[0]|[2]17117491-17117671[2]|[1]17118645-17118739[0]|[2]17119220-17119313[2]|[1]17119786-17119974[2]|[1]17122188-17122333[0]|[2]17122702-17122813[2]|[1]17129300-17129467[2]|[1]17131916-17132038[2]|[1]17134819-17135029[1]|[0]17135111-17135159[0]|[2]17136482-17136625[0]|[2]17145668-17145731[2]|[1]17145863-17145942[0]|[2]17147517-17147628[2]|[1]17148667-17148787[1]|[0]17150498-17150655[2]|[1]17155526-17155629[0]|[2]17168677-17169741[0]<==>chr11|-|[2]17494332-17494376[0]|[2]17495569-17495677[2]|[1]17496758-17496813[0]|[2]17498162-17498271[1]|[0]17501051-17501150[0]|[2]17501482-17501535[0]|[2]17501939-17501980[0]|[2]17504647-17504697[0]|[2]17505830-17505949[0]|[2]17509356-17509838[0]|[2]17510405-17510521[0]|[2]17511902-17512054[0]|[2]17516241-17516290[1] atggctcagatatctagcaacagcggatttaaagaatgtccatcttcacatccggaaccaacaagagcaaaagatgtggacaaagaagaagcattacagatggaagcagaggctttagcaaaactgcaaaaggatagacaagtgactgacaatcagagaggctttgagttgtcaagcagcaccagaaaaaaagcacaggtttataacaagcaggattatgatctcatggtgtttcctgaatcagattcccaaaaaagagcattagatattgatgtagaaaagctcacccaagctgaacttgagaaactattgctggatgacagtttcgagactaaaaaaacacctgtattaccagttactcctattctgagcccttccttttcagcacagctctattttagacctactattcagagaggacagtggccacctggattacctgggccttccacttatgctttaccttctatttatccttctacttacagtaaacaggctgcattccaaaatggcttcaatccaagaatgcccacttttccatctacagaacctatatatttaagtcttccgggacaatctccatatttctcatatcctttgacacctgccacaccctttcatccacaaggaagcttacctatctatcgtccagtagtcagtactgacatggcaaaactatttgacaaaatagctagtacatcagaatttttaaaaaatgggaaagcaaggactgatttggagataacagattcaaaagtcagcaatctacaggtatctccaaagtctgaggatatcagtaaatttgactggttagacttggatcctctaagtaagcctaaggtggataatgtggaggtattagaccatgaggaagagaaaaatgtttcaagtttgctagcaaaggatccttgggatgctgttcttcttgaagagagatcgacagcaaattgtcatcttgaaagaaaggtgaatggaaaatccctttctgtggcaactgttacaagaagccagtctttaaatattcgaacaactcagcttgcaaaagcccagggccatatatctcagaaagacccaaatgggaccagtagtttgccaactggaagttctcttcttcaagaagttgaagtacagaatgaggagatggcagctttttgtcgatccattacaaaattgaagaccaaatttccatataccaatcaccgcacaaacccaggctatttgttaagtccagtcacagcacaaagaaacatatgcggagaaaatgctagtgtgaaggtctccattgacattgaaggatttcagctaccagttacttttacgtgtgatgtgagttctactgtagaaatcattataatgcaagccctttgctgggtacatgatgacttgaatcaagtagatgttggcagctatgttctaaaagtttgtggtcaagaggaagtgctgcagaataatcattgccttggaagtcatgagcatattcaaaactgtcgaaaatgggacacagaaattagactacaactcttgaccttcagtgcaatgtgtcaaaatctggcccgaacagcagaagatgatgaaacacccgtggatttaaacaaacacctgtatcaaatagaaaaaccttgcaaagaagccatgacgagacaccctgttgaagaactcttagattcttatcacaaccaagtagaactggctcttcaaattgaaaaccaacaccgagcagtagatcaagtaattaaagctgtaagaaaaatctgtagtgctttagatggtgtcgagactcttgccattacagaatcagtaaagaagctaaagagagcagttaatcttccaaggagtaaaactgctgatgtgacttctttgtttggaggagaagacactagcaggagttcaactaggggctcacttaatcctgaaaatcctgttcaagtaagcataaaccaattaactgcagcaatttatgatcttctcagactccatgcaaattctggtaggagtcctacagactgtgcccaaagtagcaagagtgtcaaggaagcatggactacaacagagcagctccagtttactatttttgctgctcatggaatttcaagtaattgggtatcaaattatgaaaaatactacttgatatgttcactgtctcacaatggaaaggatctttttaaacctattcaatcaaagaaggttggcacttacaagaatttcttctatcttattaaatgggatgaactaatcatttttcctatccagatatcacaattgccattagaatcagttcttcaccttactctttttggaattttaaatcagagcagtggaagttcccctgattctaataagcagagaaagggaccagaagctttgggcaaagtttctttacctctttttgactttaaacggtttttaacatgtggaactaaacttctatatctttggacttcatcacatacaaattctgttcctggaacagttaccaaaaaaggatatgtcatggaaagaatagtgctacaggttgattttccttctcctgcatttgatattatttatacaactcctcaagttgacagaagcattatacagcaacataacttagaaacactagagaatgatataaaagggaaacttcttgatattcttcataaagactcatcacttggactttctaaagaagataaagcttttttatgggagaaacgttattattgcttcaaacacccaaattgtcttcctaaaatattagcaagcgccccaaactggaaatgggttaatcttgccaaaacttactcattgcttcaccagtggcctgcattgtacccactaattgcattggaacttcttgattcaaaatttgctgatcaggaagtaagatccctagctgtgacctggattgaggccattagtgatgatgagctaacagatcttcttccacagtttgtacaagctttgaaatatgaaatttacttgaatagttcattagtgcaattccttttgtccagggcattgggaaatatccagatagcacacaatttatattggcttctcaaagatgccctgcatgatgtacagtttagtacccgatacgaacatgttttgggtgctctcctgtcagtaggaggaaaacgacttagagaagaacttctaaaacagacgaaacttgtacagcttttaggaggagtagcagaaaaagtaaggcaggctagtggatcagccagacaggttgttctccaaagaagtatggaacgagtacagtccttttttcagaaaaataaatgccgtctccctctcaagccaagtctagtggcaaaagaattaaatattaagtcgtgttccttcttcagttctaatgctgtccccctaaaagtcacaatggtgaatgctgaccctatgggagaagaaattaatgtcatgtttaaggttggtgaagatcttcggcaagatatgttagctttacagatgataaagattatggataagatctggcttaaagaaggactagatctgaggatggtaattttcaaatgtctctcaactggcagagatcgagCTTTTGGATGGTTTTATCGTTACGATGGCAAATTCCCAACCATCCGGAAGAAAGGAAAAGATAAGAAGAAAGCCAAGTATGGCAGCCTGCAGGACTTGAGAAAGAATAAGAAAGAACTGGAGTTTGAGCAAAAGCTTTACAAAGAGAAAGAGGAAATGCTGGAGAAGGAAAAGCAGCTAAAGATCAACCGGCTGGCCCAGGAGGTGTCTGAGACAGAGCGGGAAGACCTTGAAGAATCGGAAAAGATTCAATATTGGGTGGAGAGGCTCTGTCAAACGCGCCTCGAGCAGATTTCCTCTGCTGATAATGAGATTTCAGAGATGACCACAGGGCCCCCGCCTCCCCCGCCTTCTGTGTCTCCCCTGGCCCCACCCTTGAGACGCTTCGCAGGCGGACTGCACCTGCACACCACTGACCTGGACGACATCCCTTTGGACATGTTCTACTATCCCCCCAAGACTCCCTCTGCCTTGCCTGTGATGCCCCACCCTCCACCCTCCAACCCACCCCACAAGGTCCCGGCGCCCCCTGTCCTTCCCTTATCTGGCCATGTGAGCGCCTCATCCTCTCCATGGGTGCAGCGCACTCCACCCCCCATTCCCATCCCTCCCCCGCCATCCGTTCCCACCCAAGACCTCACTCCCACCCGCCCACTGCCCTCGGCGCTGGAAGAAGCACTGAGCAACCATCCCTTCCGCACTGGGGACACAGGCAATCCAGTGGAGGACTGGGAGGCAAAGAACCACAGTGGGAAGCCCACTAACTCCCCTGTCCCTGAACAGAGCTTCCCACCCACCCCAAAGACATTTTGCCCAAGCCCACAGCCTCCACGAGGCCCTGGCGTGTCCACCATCTCCAAACCTGTCATGGTCCACCAGGAGCCCAATTTCATCTACAGGCCAGCTGTGAAATCTGAAGTTCTGCCACAGGAGATGTTGAAGAGGATGGTGGTTTATCAGACAGCATTCAGACAAGATTTCCGGAAATATGAGGAAGGCTTTGACCCCTACTCTATGTTCACCCCAGAGCAGATCATGGGGAAGGATGTCCGGCTCCTACGCATCAAGAAGGAGGGATCCTTAGACCTGGCCCTGGAAGGCGGTGTGGACTCCCCCATTGGGAAGGTGGTCGTTTCTGCTGTGTATGAGCGGGGAGCTGCTGAGCGGCATGGTGGCATTGTGAAAGGGGACGAGATCATGGCAATCAACGGCAAGATTGTGACAGACTACACCCTGGCTGAGGCTGAGGCTGCCCTGCAGAAGGCCTGGAATCAGGGCGGGGACTGGATCGACCTTGTGGTTGCCGTCTGCCCCCCAAAGGAGTATGACGATGAGCTAGCTTCTCTTCCCTCCTCCGTAGCTGAAAGCCCCCAACCGGTCCGAAAGCTCCTTGAAGACCGTGCTGCCGTGCACAGACACGGGTTCCTCCTGCAGCTGGAGCCCACGGACCTTCTTCTGAAGTCCAAAAGGGGAAACCAAATTCACCGTTAG MAQISSNSGFKECPSSHPEPTRAKDVDKEEALQMEAEALAKLQKDRQVTDNQRGFELSSSTRKKAQVYNKQDYDLMVFPESDSQKRALDIDVEKLTQAELEKLLLDDSFETKKTPVLPVTPILSPSFSAQLYFRPTIQRGQWPPGLPGPSTYALPSIYPSTYSKQAAFQNGFNPRMPTFPSTEPIYLSLPGQSPYFSYPLTPATPFHPQGSLPIYRPVVSTDMAKLFDKIASTSEFLKNGKARTDLEITDSKVSNLQVSPKSEDISKFDWLDLDPLSKPKVDNVEVLDHEEEKNVSSLLAKDPWDAVLLEERSTANCHLERKVNGKSLSVATVTRSQSLNIRTTQLAKAQGHISQKDPNGTSSLPTGSSLLQEVEVQNEEMAAFCRSITKLKTKFPYTNHRTNPGYLLSPVTAQRNICGENASVKVSIDIEGFQLPVTFTCDVSSTVEIIIMQALCWVHDDLNQVDVGSYVLKVCGQEEVLQNNHCLGSHEHIQNCRKWDTEIRLQLLTFSAMCQNLARTAEDDETPVDLNKHLYQIEKPCKEAMTRHPVEELLDSYHNQVELALQIENQHRAVDQVIKAVRKICSALDGVETLAITESVKKLKRAVNLPRSKTADVTSLFGGEDTSRSSTRGSLNPENPVQVSINQLTAAIYDLLRLHANSGRSPTDCAQSSKSVKEAWTTTEQLQFTIFAAHGISSNWVSNYEKYYLICSLSHNGKDLFKPIQSKKVGTYKNFFYLIKWDELIIFPIQISQLPLESVLHLTLFGILNQSSGSSPDSNKQRKGPEALGKVSLPLFDFKRFLTCGTKLLYLWTSSHTNSVPGTVTKKGYVMERIVLQVDFPSPAFDIIYTTPQVDRSIIQQHNLETLENDIKGKLLDILHKDSSLGLSKEDKAFLWEKRYYCFKHPNCLPKILASAPNWKWVNLAKTYSLLHQWPALYPLIALELLDSKFADQEVRSLAVTWIEAISDDELTDLLPQFVQALKYEIYLNSSLVQFLLSRALGNIQIAHNLYWLLKDALHDVQFSTRYEHVLGALLSVGGKRLREELLKQTKLVQLLGGVAEKVRQASGSARQVVLQRSMERVQSFFQKNKCRLPLKPSLVAKELNIKSCSFFSSNAVPLKVTMVNADPMGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLKEGLDLRMVIFKCLSTGRDRAFGWFYRYDGKFPTIRKKGKDKKKAKYGSLQDLRKNKKELEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESEKIQYWVERLCQTRLEQISSADNEISEMTTGPPPPPPSVSPLAPPLRRFAGGLHLHTTDLDDIPLDMFYYPPKTPSALPVMPHPPPSNPPHKVPAPPVLPLSGHVSASSSPWVQRTPPPIPIPPPPSVPTQDLTPTRPLPSALEEALSNHPFRTGDTGNPVEDWEAKNHSGKPTNSPVPEQSFPPTPKTFCPSPQPPRGPGVSTISKPVMVHQEPNFIYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEEGFDPYSMFTPEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERGAAERHGGIVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELASLPSSVAESPQPVRKLLEDRAAVHRHGFLLQLEPTDLLLKSKRGNQIHR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29290 TTI1::KIAA1755 ENSG00000101407.13::ENSG00000149633.12 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 563 FALSE NA FALSE NA TTI1 ENSG00000101407.13 protein_coding - - chr20:37983007-38033461:- chr20:38033404:- chr20:36611409-36661863:- chr20:36661806:- KIAA1755 ENSG00000149633.12 protein_coding - - chr20:38210503-38260772:- chr20:38213743:- chr20:36838905-36889174:- chr20:36842145:- chr20:38015098,chr20:38015098,chr20:38015104 chr20:38218106,chr20:38218105,chr20:38218109 NA NA chr20:36643500,chr20:36643500,chr20:36643506 chr20:36846508,chr20:36846507,chr20:36846511 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr20:0.18Mb] 14 0 14 0 ONLY_REF_SPLICE YES_LDAS 0.1315 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29291 SLC16A3::ZBED5 ENSG00000141526.18::ENSG00000236287.8 TE1 SRR8615464 SRR8670671 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 561 FALSE NA FALSE NA SLC16A3 ENSG00000141526.18 protein_coding + + chr17:82217934-82261129:+ chr17:82228529:+ chr17:80175810-80219005:+ chr17:80186405:+ ZBED5 ENSG00000236287.8 protein_coding - - chr11:10812074-10858796:- chr11:10856257:- chr11:10833621-10880343:- chr11:10877804:- chr17:82228964,chr17:82228965 chr11:10857542,chr11:10857541 NA NA chr17:80186840,chr17:80186841 chr11:10879089,chr11:10879088 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SLC16A3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr11] 13 1 13 0.59 ONLY_REF_SPLICE YES_LDAS 0.1276 GT 1.231 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29297 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 565 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103910321:+ chr8:104512838-105266658:+ chr8:104922549:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LysM|101-143|1.8e-12^DUF3350|157-170|0.31^GRAM|205-268|2e-05^DUF3350|488-514|0.00066^EAD7-PARTIAL|665-678~|0.00015 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:2.01Mb] 64 80 64 45.11 ONLY_REF_SPLICE YES_LDAS 1.2517 GT 1.9656 AG 1.7056 ENST00000442977.6 1-678 ENST00000696799.1 1757-4824 chr8|+|[0]106448023-106448048[1]|[2]106518943-106519139[0]|[1]106679210-106679292[2]|[0]106683199-106683306[2]|[0]106684246-106684359[2]|[0]106692728-106692877[2]<==>chr8|+|[1]103910321-103910529[2]|[0]103912053-103912172[2]|[0]103915495-103915594[0]|[1]103916414-103916537[1]|[2]103918441-103918487[0]|[1]103921672-103921784[2]|[0]103931263-103931393[1]|[2]103936551-103936722[2]|[0]103942773-103942926[0]|[1]103961065-103961133[0]|[1]103975350-103975506[1]|[2]103989305-103989421[1]|[2]104013442-104013621[1]|[2]104014506-104014615[0]|[1]104041326-104041358[0]|[1]104068512-104068612[2]|[0]104093471-104093643[1]|[2]104148607-104148848[0]|[1]104244916-104245057[1]|[2]104248701-104248813[0]|[1]104249487-104249588[0]|[1]104251024-104251163[2]|[0]104251602-104251820[2] atgacgaaggacaaaaacagcccagggctgaagaaaaagtcccagtcggtggatattaatgctccagggttcaaccctttggctggtgcaggaaagcaaacaccacaagccagtaagcccccggcacccaagacccccatcattgaagaagagcagaacaatgcagcaaatactcagaaacatccttccagaaggagcgaactgaagaggttctacacaattgacactggccaaaagaagaccctagacaagaaagatggaagacgaatgtcttttcagaaacctaaagggactattgagtatactgttgaatcaagggattctttgaatagcatagccctgaagtttgatacaacacctaacgaacttgttcaattaaataagttattctcccgagcagttgttactggacaggttctgtatgttcctgatcctgaatatgtctccagtgttgagagctctccatctctaagccccgtaagtcctctgtcaccaacatcatctgaggctgaatttgataagaccactaatcctgatgtccatccaacagaagcaactccctcatctactttcactggtattcgacctgcacgagttgtatcttcaacttctgaggaggaggaagcatttactgagaaatttcttaaaattaattgcaaatatattaccagtggcaagGGGACAGTCAAAAGGGAAAAAGAAAAACTAGTGAGCAGGCAGTTTTGTCGGACTCTAACACCAGGTCTGAGAGACAAAAGGAAATGATGTACTTTGGTGGCCACTCTTTGGAAGAGGATTTGGAATGGTCTGAACCTCAGATTAAGGACTCTGGGGTAGATACGTGTAGTAGCACAACCCTTAACGAGGAGCATAGCCATAGTGATAAGCACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGGAGATATACCGCGAATACCTGATAGCACACATGCACAACTGGAGTCCAGTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCACAGTTCTTATCAGGACAACTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAGTGATAAAAACAAGAGAAGAACTAAAACAGTAAAGAAAACATTGGAACCCAAATGGAACCAAACATTCATTTATTCTCCAGTCCACCGAAGAGAATTTCGGGAACGAATGCTAGAGATTACCCTTTGGGATCAAGCTCGTGTTCGAGAGGAAGAAAGTGAATTCTTAGGCGAGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCGCACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAAAGAACTGGACTCTACAAGGAGAAGATATGCAGGTACTATGGATATAGAGGAGAGAAATCGCCAAATGAAAATTAACAAATACAAACAGGTAGCCGGATCAGATCCCAGACTGGAACAAGATTACCATTCGAAGTATCGATCAGGATGGGATCCTCATAGAGGGGCAGATAATGTTTCTACTAAATCTTCGGACAGTGATGTAAGTGATATATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCTGTCCAATCAGAACGCCCAGGAGGAAACAAGAAAATCAGTGTCTTTACATCCAAAATGCAAAGCAGACAAATGGGCATATCAGGGAAGAACATGACAAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGATGGCAGCCAGTCTGACACTGCAGTGGGCACCTTGGGCACCAGTGGCAAAAAGCGGCGCTCTAGCCTTGGTGCCAAAATGGTAGCTATCGTTGGTCTGTCACGGAAAAGTCGCAGTGCTTCTCAGCTCAGCCAAACGGAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAG MTKDKNSPGLKKKSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGKGTVKREKEKLVSRQFCRTLTPGLRDKRK*CTLVATLWKRIWNGLNLRLRTLG*IRVVAQPLTRSIAIVISTL*PGNHLKMEIV*LVAFY*ISV*KMEVYLEIQEQCLA*RL*EER*LNQVGFVHLLLK*KKEV*LIL*DILDQVMKY*NGMEDYCKEPHLRKCTTSF*NPNLNHK*NL*FQGLLEIYREYLIAHMHNWSPVLAPLNLKKWIVLLFLLPLP*VLEC*GMSHSSYQDNFQ*NYGLTRLVTN**LQFWEQKISLPGKMGGQGILMLKFTFFQTEVIKTREELKQ*RKHWNPNGTKHSFILQSTEENFGNEC*RLPFGIKLVFERKKVNS*ARF*LN*KQHY*MMSHIGTNFRRMMSLHCHFPTLLHICHEDSSMERAQHGGCKGQRE*VIVKSLTMTVMMELV*YQIIDMMVEIFKAQHYQCQNK*CHQTTVHHQGLLIE*ML*EGLDHGHPVSLLHKVGMWNRGFEGPAL*PDIIIQLAEWTDIVSWMTIILQIETGIVKQQIDSHITDPDQQNNGLSLSGPPPAPDPLNVLIQTS*GRCLH**LEDLPLLHLPYRGLILVLGLSRQAHQVLQSQDEGADSFHSFHQRERWIEKNWTLQGEDMQVLWI*RREIAK*KLTNTNR*PDQIPDWNKITIRSIDQDGILIEGQIMFLLNLRTVM*VIYLRFQGLVVLLVSAAQATCLSNQNAQEETRKSVSLHPKCKADKWAYQGRT*QKAPASVETCAHWRRMMAASLTLQWAPWAPVAKSGALALVPKW*LSLVCHGKVAVLLSSAKRKQEVKN*GALSKEVQKQAWPWK*GTG*LDRQAESLQMVA*TATAQKEI*FSLVFAWPLIASSVISWMALALLS*WDARLWQHLQWVTFR*E*WTKRDSWR*KSSGPVALL*NQVPRHCQHRM*KCIY*ITESA*PKRKQKWQEKRWNPFTSSYYLSKRVHKEKFYRSSSGEIMAAWITNLLWEWPRYF*MN*SYPIW*SDGSNFSHLPP**IQPWPL*QEELPNHLWKVQLDLLTLVH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29300 PTPN12::PHTF2 ENSG00000127947.16::ENSG00000006576.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 568 FALSE NA FALSE NA PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77600806:+ chr7:77166612-77269386:+ chr7:77230123:+ PHTF2 ENSG00000006576.17 protein_coding + + chr7:77798773-77957503:+ chr7:77920279:+ chr7:77428090-77586820:+ chr7:77549596:+ chr7:77605420,chr7:77605420 chr7:77914342,chr7:77914333 NA NA chr7:77234737,chr7:77234737 chr7:77543659,chr7:77543650 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PTPlike_phytase|36-71|1.5^Y_phosphatase|58-291|1.4e-87^Y_phosphatase3|190-280|5.2e-07^PTPlike_phytase|199-243|0.00027^DSPc|201-243|6e-06^PTPlike_phytase|405-438|0.11 none ["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.16Mb] 36 32 36 32 ONLY_REF_SPLICE YES_LDAS 0.7801 GT 1.8295 AG 1.4256 ENST00000248594.11 1-695 ENST00000248550.7 777-2358 chr7|+|[0]77537547-77537645[2]|[0]77571078-77571186[0]|[1]77581427-77581503[2]|[0]77583555-77583650[2]|[0]77585543-77585581[2]|[0]77592185-77592256[2]|[0]77597842-77597901[2]|[0]77600664-77600806[1]<==>chr7|+|[2]77920279-77920465[2]|[0]77922623-77922778[2]|[0]77929109-77929327[2]|[0]77937710-77937838[2]|[0]77940030-77940302[2]|[0]77940528-77940659[2]|[0]77942700-77942786[2]|[0]77949678-77949833[2]|[0]77951617-77951712[2]|[0]77953769-77953894[2]|[0]77954858-77954878[2] atggagcaagtggagatcctgaggaaattcatccagagggtccaggccatgaagagtcctgaccacaatggggaggacaacttcgcccgggacttcatgcggttaagaagattgtctaccaaatatagaacagaaaagatatatcccacagccactggagaaaaagaagaaaatgttaaaaagaacagatacaaggacatactgccatttgatcacagccgagttaaattgacattaaagactccttcacaagattcagactatatcaatgcaaattttataaagggcgtctatgggccaaaagcatatgtagcaactcaaggacctttagcaaatacagtaatagatttttggaggatgatatgggagtataatgttgtgatcattgtaatggcctgccgagaatttgagatgggaaggaaaaaatgtgagcgctattggcctttgtatggagaagaccccataacgtttgcaccatttaaaatttcttgtgaggatgaacaagcaagaacagactacttcatcaggacactcttacttgaatttcaaaatgaatctcgtaggctgtatcagtttcattatgtgaactggccagaccatgatgttccttcatcatttgattctattctggacatgataagcttaatgaggaaatatcaagaacatgaagatgttcctatttgtattcattgcagATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTCTCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCGGAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGGACGCCCCTAAATCGGGTACTAGTTGCAGCTCTCGCTGTTCAAGTTCCAGACAGGATTCTGAGAGTGCAAGGCCAGAATCTGAAACAGAAGATGTGTTATGGGAAGACTTGTTACATTGTGCAGAATGCCATTCATCTTGTACCAGTGAGACAGATGTGGAAAATCATCAGATTAATCCATGTGTGAAAAAAGAATATAGAGATGACCCTTTTCATCAGAGTCATTTGCCCTGGCTCCATAGTTCCCACCCAGGATTAGAAAAAATAAGTGCTATAGTATGGGAAGGTAATGATTGTAAGAAAGCAGACATGTCTGTACTTGAAATCAGTGGAATGATAATGAACAGAGTGAACAGCCATATACCAGGAATAGGATACCAGATTTTTGGAAATGCAGTCTCTCTCATACTGGGTTTAACTCCATTTGTTTTCCGACTTTCTCAAGCTACAGACTTGGAACAACTCACAGCACATTCTGCTTCAGAACTTTATGTGATTGCATTTGGTTCTAATGAAGATGTCATAGTTCTTTCTATGGTTATAATAAGTTTTGTGGTTCGCGTGTCTCTTGTGTGGATTTTCTTTTTTTTGCTCTGTGTAGCAGAAAGAACTTATAAACAGCGATTACTTTTTGCAAAACTCTTTGGACATTTAACATCTGCAAGGAGGGCTCGAAAATCTGAGGTTCCTCATTTCCGGTTGAAGAAAGTACAGAATATAAAAATGTGGCTATCTCTCCGTTCCTATCTTAAGCGTCGAGGTCCTCAGCGATCAGTTGATGTAATAGTTTCATCTGCTTTCTTATTGACTATCTCAGTTGTATTTATCTGTTGTGCCCAGCTACTTCATGTACACGAGATCTTCCTTGATTGTCACTACAATTGGGAATTGGTAATCTGGTGCATCTCGTTAACACTTTTTCTCCTAAGATTTGTTACCCTTGGATCAGAAACAAGTAAAAAATATAGTAATACCTCAATATTACTTACTGAACAGATAAACCTCTACTTGAAAATGGAGAAAAAACCTAACAAAAAGGAGGAACTGACACTAGTGAATAATGTTTTAAAACTGGCTACTAAACTGCTAAAGGAGTTGGACAGTCCTTTTAGATTATATGGGCTTACAATGAATCCGCTGCTTTATAACATCACCCAGGTTGTTATCCTGTCAGCTGTTTCTGGTGTTATCAGTGACTTGCTTGGATTTAATTTAAAGCTATGGAAGATTAAGTCATGA MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFMRLRRLSTKYRTEKIYPTATGEKEENVKKNRYKDILPFDHSRVKLTLKTPSQDSDYINANFIKGVYGPKAYVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPFKISCEDEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSILDMISLMRKYQEHEDVPICIHCRSKKAKNSIDKSTETDNGYVSLDGKKTVKSGEDGIQNHEPQCETIRPEETAWNTGTLRNGPSKDTQRTITNVSDEVSSEEGPETGYSLRRHVDRTSEGVLRNRKSHHYKKHYPNEDAPKSGTSCSSRCSSSRQDSESARPESETEDVLWEDLLHCAECHSSCTSETDVENHQINPCVKKEYRDDPFHQSHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMNRVNSHIPGIGYQIFGNAVSLILGLTPFVFRLSQATDLEQLTAHSASELYVIAFGSNEDVIVLSMVIISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFICCAQLLHVHEIFLDCHYNWELVIWCISLTLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIKS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST no_match 77639324 FALSE 77893592 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29301 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 566 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103910134:+ chr8:104512838-105266658:+ chr8:104922362:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LysM|101-143|1.8e-12^DUF3350|157-170|0.31^GRAM|205-268|2e-05^DUF3350|488-514|0.00066^EAD7-PARTIAL|665-678~|0.00015 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:2.01Mb] 36 87 36 37.31 ONLY_REF_SPLICE YES_LDAS 0.841 GT 1.9656 AG 1.8892 ENST00000442977.6 1-678 ENST00000666250.1 1625-4779 chr8|+|[0]106448023-106448048[1]|[2]106518943-106519139[0]|[1]106679210-106679292[2]|[0]106683199-106683306[2]|[0]106684246-106684359[2]|[0]106692728-106692877[2]<==>chr8|+|[1]103910134-103910201[2]|[0]103912053-103912172[2]|[0]103915495-103915594[0]|[1]103916414-103916537[1]|[2]103918441-103918487[0]|[1]103921672-103921784[2]|[0]103931263-103931393[1]|[2]103936551-103936722[2]|[0]103942773-103942926[0]|[1]103961065-103961133[0]|[1]103975350-103975506[1]|[2]103989305-103989421[1]|[2]103998185-103998250[1]|[2]104013442-104013621[1]|[2]104014506-104014615[0]|[1]104015424-104015456[0]|[1]104031680-104031769[0]|[1]104033660-104033698[0]|[1]104041326-104041358[0]|[1]104068512-104068612[2]|[0]104093471-104093643[1]|[2]104148607-104148848[0]|[1]104244916-104245057[1]|[2]104248701-104248813[0]|[1]104249487-104249588[0]|[1]104251024-104251163[2]|[0]104251602-104251820[2] atgacgaaggacaaaaacagcccagggctgaagaaaaagtcccagtcggtggatattaatgctccagggttcaaccctttggctggtgcaggaaagcaaacaccacaagccagtaagcccccggcacccaagacccccatcattgaagaagagcagaacaatgcagcaaatactcagaaacatccttccagaaggagcgaactgaagaggttctacacaattgacactggccaaaagaagaccctagacaagaaagatggaagacgaatgtcttttcagaaacctaaagggactattgagtatactgttgaatcaagggattctttgaatagcatagccctgaagtttgatacaacacctaacgaacttgttcaattaaataagttattctcccgagcagttgttactggacaggttctgtatgttcctgatcctgaatatgtctccagtgttgagagctctccatctctaagccccgtaagtcctctgtcaccaacatcatctgaggctgaatttgataagaccactaatcctgatgtccatccaacagaagcaactccctcatctactttcactggtattcgacctgcacgagttgtatcttcaacttctgaggaggaggaagcatttactgagaaatttcttaaaattaattgcaaatatattaccagtggcaagGAGACATGGATTACAACTGGTTGGATCATACGTCTTGGCATAGCAGTGAGGCATCCCCAATGTCTTTGCACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGGAGATATACCGCGAATACCTGATAGCACACATGCACAACTGGAGTCCAGTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCACAGTTCTTATCAGGACAACTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAGTGATAAAAACAAGAGAAGAACTAAAACAGTAAAGAAAACATTGGAACCCAAATGGAACCAAACATTCATTTATTCTCCAGTCCACCGAAGAGAATTTCGGGAACGAATGCTAGAGATTACCCTTTGGGATCAAGCTCGTGTTCGAGAGGAAGAAAGTGAATTCTTAGGCGAGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCGCACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGTCATTTTCTTACTCTACCTCGCTCCAGATACAGTCAGACCATTGACCATCATCACAGGGATGGCAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAACAATGGAGTCAAGGAGATAGAACCTTATGAAGAAGTTACATGGGAAGACCAGCAGAAAAAGGTGAATGGTACAATAAGTGATGACAAACCATTGCCGAAAAAGAAACACCAGTCTGAGACAGGAAAATTGGTCCTGGAAATTGAAACCCTAAATGTCATGAAAGAACTGGACTCTACAAGGAGAAGATATGCAGGTACTATGGATATAGAGGAGAGAAATCGCCAAATGAAAATTAACAAATACAAACAGGTAGCCGGATCAGATCCCAGACTGGAACAAGATTACCATTCGAAGTATCGATCAGGATGGGATCCTCATAGAGGGGCAGATAATGTTTCTACTAAATCTTCGGACAGTGATGTAAGTGATATATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCTGTCCAATCAGAACGCCCAGGAGGAAACAAGAAAATCAGTGTCTTTACATCCAAAATGCAAAGCAGACAAATGGGCATATCAGGGAAGAACATGACAAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGATGGCAGCCAGTCTGACACTGCAGTGGGCACCTTGGGCACCAGTGGCAAAAAGCGGCGCTCTAGCCTTGGTGCCAAAATGGTAGCTATCGTTGGTCTGTCACGGAAAAGTCGCAGTGCTTCTCAGCTCAGCCAAACGGAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAG MTKDKNSPGLKKKSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGKETWITTGWIIRLGIAVRHPQCLCTL*PGNHLKMEIV*LVAFY*ISV*KMEVYLEIQEQCLA*RL*EER*LNQVGFVHLLLK*KKEV*LIL*DILDQVMKY*NGMEDYCKEPHLRKCTTSF*NPNLNHK*NL*FQGLLEIYREYLIAHMHNWSPVLAPLNLKKWIVLLFLLPLP*VLEC*GMSHSSYQDNFQ*NYGLTRLVTN**LQFWEQKISLPGKMGGQGILMLKFTFFQTEVIKTREELKQ*RKHWNPNGTKHSFILQSTEENFGNEC*RLPFGIKLVFERKKVNS*ARF*LN*KQHY*MMSHIGTNFRRMMSLHCHFPTLLHICHEDSSMERAQHGGCKGQRE*VIVKSLTMTVMMELV*YQIIDMMVEIFKAQHYQCQNK*CHQTTVHHQGLLIE*ML*EGLDHGHPVSLLHKVGMWNRGFEGPAL*PDIIIQLAEWTDIVSWMTIILQIETVIFLLYLAPDTVRPLTIITGMAGIVKQQIDSHITDPDQQNNGLSLSGPPPAPDPLNVLIQTS*GRCLH**LEDLPLLHLPYRGLILVLGLSRQAHQVLQSQDEGADSFHSFHQRERWIETMESRR*NLMKKLHGKTSRKR*MVQ*VMTNHCRKRNTSLRQENWSWKLKP*MS*KNWTLQGEDMQVLWI*RREIAK*KLTNTNR*PDQIPDWNKITIRSIDQDGILIEGQIMFLLNLRTVM*VIYLRFQGLVVLLVSAAQATCLSNQNAQEETRKSVSLHPKCKADKWAYQGRT*QKAPASVETCAHWRRMMAASLTLQWAPWAPVAKSGALALVPKW*LSLVCHGKVAVLLSSAKRKQEVKN*GALSKEVQKQAWPWK*GTG*LDRQAESLQMVA*TATAQKEI*FSLVFAWPLIASSVISWMALALLS*WDARLWQHLQWVTFR*E*WTKRDSWR*KSSGPVALL*NQVPRHCQHRM*KCIY*ITESA*PKRKQKWQEKRWNPFTSSYYLSKRVHKEKFYRSSSGEIMAAWITNLLWEWPRYF*MN*SYPIW*SDGSNFSHLPP**IQPWPL*QEELPNHLWKVQLDLLTLVH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29302 OXR1::RIMS2 ENSG00000164830.19::ENSG00000176406.25 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 567 TRUE 1036 TRUE 383 OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106692877:+ chr8:107282372-107764922:+ chr8:107705105:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103912053:+ chr8:104512838-105266658:+ chr8:104924281:+ chr8:106697226,chr8:106697225 chr8:103900969,chr8:103900965 NA NA chr8:107709454,chr8:107709453 chr8:104913197,chr8:104913193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LysM|101-143|1.8e-12^DUF3350|157-170|0.31^GRAM|205-268|2e-05^DUF3350|488-514|0.00066^EAD7-PARTIAL|665-678~|0.00015 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:2.01Mb] 19 40 19 4.58 ONLY_REF_SPLICE YES_LDAS 0.2705 GT 1.9656 AG 1.9219 ENST00000442977.6 1-678 ENST00000666250.1 1693-4779 chr8|+|[0]106448023-106448048[1]|[2]106518943-106519139[0]|[1]106679210-106679292[2]|[0]106683199-106683306[2]|[0]106684246-106684359[2]|[0]106692728-106692877[2]<==>chr8|+|[0]103912053-103912172[2]|[0]103915495-103915594[0]|[1]103916414-103916537[1]|[2]103918441-103918487[0]|[1]103921672-103921784[2]|[0]103931263-103931393[1]|[2]103936551-103936722[2]|[0]103942773-103942926[0]|[1]103961065-103961133[0]|[1]103975350-103975506[1]|[2]103989305-103989421[1]|[2]103998185-103998250[1]|[2]104013442-104013621[1]|[2]104014506-104014615[0]|[1]104015424-104015456[0]|[1]104031680-104031769[0]|[1]104033660-104033698[0]|[1]104041326-104041358[0]|[1]104068512-104068612[2]|[0]104093471-104093643[1]|[2]104148607-104148848[0]|[1]104244916-104245057[1]|[2]104248701-104248813[0]|[1]104249487-104249588[0]|[1]104251024-104251163[2]|[0]104251602-104251820[2] atgacgaaggacaaaaacagcccagggctgaagaaaaagtcccagtcggtggatattaatgctccagggttcaaccctttggctggtgcaggaaagcaaacaccacaagccagtaagcccccggcacccaagacccccatcattgaagaagagcagaacaatgcagcaaatactcagaaacatccttccagaaggagcgaactgaagaggttctacacaattgacactggccaaaagaagaccctagacaagaaagatggaagacgaatgtcttttcagaaacctaaagggactattgagtatactgttgaatcaagggattctttgaatagcatagccctgaagtttgatacaacacctaacgaacttgttcaattaaataagttattctcccgagcagttgttactggacaggttctgtatgttcctgatcctgaatatgtctccagtgttgagagctctccatctctaagccccgtaagtcctctgtcaccaacatcatctgaggctgaatttgataagaccactaatcctgatgtccatccaacagaagcaactccctcatctactttcactggtattcgacctgcacgagttgtatcttcaacttctgaggaggaggaagcatttactgagaaatttcttaaaattaattgcaaatatattaccagtggcaagCACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGGAGATATACCGCGAATACCTGATAGCACACATGCACAACTGGAGTCCAGTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCACAGTTCTTATCAGGACAACTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAGTGATAAAAACAAGAGAAGAACTAAAACAGTAAAGAAAACATTGGAACCCAAATGGAACCAAACATTCATTTATTCTCCAGTCCACCGAAGAGAATTTCGGGAACGAATGCTAGAGATTACCCTTTGGGATCAAGCTCGTGTTCGAGAGGAAGAAAGTGAATTCTTAGGCGAGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCGCACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGTCATTTTCTTACTCTACCTCGCTCCAGATACAGTCAGACCATTGACCATCATCACAGGGATGGCAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAACAATGGAGTCAAGGAGATAGAACCTTATGAAGAAGTTACATGGGAAGACCAGCAGAAAAAGGTGAATGGTACAATAAGTGATGACAAACCATTGCCGAAAAAGAAACACCAGTCTGAGACAGGAAAATTGGTCCTGGAAATTGAAACCCTAAATGTCATGAAAGAACTGGACTCTACAAGGAGAAGATATGCAGGTACTATGGATATAGAGGAGAGAAATCGCCAAATGAAAATTAACAAATACAAACAGGTAGCCGGATCAGATCCCAGACTGGAACAAGATTACCATTCGAAGTATCGATCAGGATGGGATCCTCATAGAGGGGCAGATAATGTTTCTACTAAATCTTCGGACAGTGATGTAAGTGATATATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCTGTCCAATCAGAACGCCCAGGAGGAAACAAGAAAATCAGTGTCTTTACATCCAAAATGCAAAGCAGACAAATGGGCATATCAGGGAAGAACATGACAAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGATGGCAGCCAGTCTGACACTGCAGTGGGCACCTTGGGCACCAGTGGCAAAAAGCGGCGCTCTAGCCTTGGTGCCAAAATGGTAGCTATCGTTGGTCTGTCACGGAAAAGTCGCAGTGCTTCTCAGCTCAGCCAAACGGAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAG MTKDKNSPGLKKKSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRFYTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLYVPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFTEKFLKINCKYITSGKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGMLRDVPQFLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVPEQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDSHFLTLPRSRYSQTIDHHHRDGRDCEAADRQPYHRSRSTEQRPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQLPPKGTLDRNNGVKEIEPYEEVTWEDQQKKVNGTISDDKPLPKKKHQSETGKLVLEIETLNVMKELDSTRRRYAGTMDIEERNRQMKINKYKQVAGSDPRLEQDYHSKYRSGWDPHRGADNVSTKSSDSDVSDISAVSRTSSASRFSSTSYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAVGTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFKLFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29303 UBR5::ENSG00000253420 ENSG00000104517.13::ENSG00000253420.1 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBR5 ENSG00000104517.13 protein_coding - - chr8:102252273-102412759:- chr8:102360071:- chr8:103264501-103424987:- chr8:103372299:- ENSG00000253420 ENSG00000253420.1 lncRNA - - chr8:105662352-105685765:- chr8:105662941:- chr8:106674580-106697993:- chr8:106675169:- chr8:102355963,chr8:102355965 chr8:105666575,chr8:105666575 NA NA chr8:103368191,chr8:103368193 chr8:106678803,chr8:106678803 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 9 19 9 ONLY_REF_SPLICE YES_LDAS 0.3213 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ubiquitin protein ligase E3 component n-recognin 5 1 Yes mantle cell lymphoma, gastric, colorectal leukaemia_lymphoma, epithelial oncogene frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 29304 C5orf24::SNX25 ENSG00000181904.9::ENSG00000109762.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 569 FALSE NA FALSE NA C5orf24 ENSG00000181904.9 protein_coding + + chr5:134845680-134859735:+ chr5:134846212:+ chr5:134181370-134195425:+ chr5:134181902:+ SNX25 ENSG00000109762.17 protein_coding + + chr4:185204237-185370185:+ chr4:185264438:+ chr4:186125391-186291339:+ chr4:186185592:+ chr5:134850225,chr5:134850225 chr4:185263836,chr4:185263833 NA NA chr5:134185915,chr5:134185915 chr4:186184990,chr4:186184987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr5--chr4] 19 9 19 9 ONLY_REF_SPLICE YES_LDAS 0.3213 GT 1.8892 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29305 MKRN2::TSEN2 ENSG00000075975.17::ENSG00000154743.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 571 TRUE 1039 TRUE 386 MKRN2 ENSG00000075975.17 protein_coding + + chr3:12557057-12586208:+ chr3:12557176:+ chr3:12598556-12627707:+ chr3:12598675:+ TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12528888:+ chr3:12525920-12583048:+ chr3:12570387:+ chr3:12561533 chr3:12523344 NA NA chr3:12603032 chr3:12564843 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-CCCH_3-PARTIAL|1-26~|4.9e-08^Torus-PARTIAL|3-26~|7.7e-07^zf-CCCH-PARTIAL|6-26~|6.1e-07^zf-RING_2|6-16|2.9^zf-CCCH_4-PARTIAL|7-26~|3.7e-07^zf_CCCH_4|8-26|2e-08^zf-CCCH_2|8-26|3e-05^zf-C3HC4|12-26|4.5 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.02Mb];LOCAL_REARRANGEMENT:+:[17391] 18 2 18 1.24 ONLY_REF_SPLICE YES_LDAS 0.2207 GT 1.9899 AG 1.9329 ENST00000677816.1 1-26 ENST00000680857.1 1100-1551 chr3|+|[0]12557151-12557176[1]<==>chr3|+|[1]12528888-12528924[1]|[2]12529762-12529873[2]|[0]12531570-12531659[2]|[0]12539161-12539373[2] atgagcaccaagcagatcacttgcagTGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAGTCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGA MSTKQITCSAISERPSILPCKLFCHYRAS**PF*RLSPQASQLEVPGCLEQSFR*CL*GTYAVLFD*TLYYD*QGNGVTRMYEKD*SSVSLCRPGWSPMLRSWITATSACWV*AILMPQPPE*LGLQARTTTHG*FLYF**RRGFTMLARLVWNS*PQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29307 AKAP8L::BRD4 ENSG00000011243.19::ENSG00000141867.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AKAP8L ENSG00000011243.19 protein_coding - - chr19:15380050-15419141:- chr19:15397150:- chr19:15490861-15529952:- chr19:15507961:- BRD4 ENSG00000141867.19 protein_coding - - chr19:15235519-15332545:- chr19:15273133:- chr19:15346330-15443356:- chr19:15383944:- chr19:15391863 chr19:15310633 NA NA chr19:15502674 chr19:15421444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BRD4:Oncogene","BRD4:FoundationOne_panel","BRD4:ArcherDX_panel"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.05Mb];NEIGHBORS[47503] 16 12 16 12 ONLY_REF_SPLICE YES_LDAS 0.3213 GT 1.585 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN BRD4 protein Atypical BRD O60885 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bromodomain containing 4 1 Yes lethal midline carcinoma of young people epithelial oncogene, fusion translocation 29308 ULK2::SLC47A2 ENSG00000083290.20::ENSG00000180638.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 570 FALSE NA FALSE NA ULK2 ENSG00000083290.20 protein_coding - - chr17:19770829-19867936:- chr17:19826139:- chr17:19674142-19771249:- chr17:19729452:- SLC47A2 ENSG00000180638.19 protein_coding - - chr17:19678288-19718979:- chr17:19715217:- chr17:19581601-19622292:- chr17:19618530:- chr17:19825631,chr17:19825646 chr17:19716432,chr17:19716445 NA NA chr17:19728944,chr17:19728959 chr17:19619745,chr17:19619758 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|9-271|2.6e-73^PK_Tyr_Ser-Thr|13-265|2.2e-51^RIO1|24-140|5.4e-08^APH|54-124|0.0096^Kdo|56-143|1.1e-10^ABC1|75-168|2.7e-08^Pkinase_fungal|109-199|3.6e-07^Kinase-like|120-259|0.00025^APH|124-147|0.0007 MatE-PARTIAL|~124-181|1.4e-35^MatE|297-457|6.3e-33^MatE|469-485|1 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.05Mb];NEIGHBORS[51850] 14 11 14 11 ONLY_REF_SPLICE YES_LDAS 0.2868 GT 1.7232 AG 1.8062 ENST00000361658.6 1-835 ENST00000325411.9 124-1809 chr17|-|[0]19826139-19826186[1]|[0]19838501-19838583[2]|[1]19841489-19841547[0]|[2]19843121-19843222[0]|[2]19845304-19845377[1]|[0]19846737-19846910[1]|[0]19849369-19849405[0]|[2]19849742-19849774[0]|[2]19864803-19864844[0]|[2]19865736-19865828[0]|[2]19867328-19867417[0]<==>chr17|-|[2]19678686-19678906[1]|[0]19679952-19680039[0]|[2]19681367-19681461[1]|[0]19681538-19681670[0]|[2]19702605-19702674[2]|[1]19703092-19703167[1]|[0]19704070-19704178[0]|[2]19705436-19705503[1]|[0]19706648-19706761[1]|[0]19707746-19707843[2]|[1]19708302-19708507[0]|[2]19708716-19708760[0]|[2]19712703-19712745[2]|[1]19713825-19713973[0]|[2]19714721-19714789[0]|[2]19715116-19715217[0] atggaggtggtgggtgacttcgagtacagcaagagggatctcgtgggacacggggccttcgccgtggtcttccgggggcggcaccgccagaaaactgattgggaggtagctattaaaagtattaataaaaagaacttgtcaaaatcacaaatactgcttggaaaggaaattaaaatcttaaaggaacttcagcatgaaaatattgtagcactctatgatgttcaggaattacccaactctgtctttttggtgatggagtattgcaatggtggagacctcgcagattatttgcaagcgaaagggactctcagtgaagacacgatcagagtgtttctgcatcagattgctgctgccatgcgaatcctgcacagcaaaggaatcatccacagagatctcaaaccacagaacatcttgctgtcctatgccaatcgcagaaaatcaagtgtcagtggtattcgcatcaaaatagcggattttggttttgctcgttacctacatagtaacatgatggctgcaacactgtgtggatccccgatgtacatggctcctgaggttattatgtctcaacattatgatgctaaggctgacttgtggagcataggaacagtgatataccaatgcctagttggaaaaccaccttttcaggccaatagtcctcaagacttaaggatgttttatgaaaaaaacaggagcttaatgcctagtattcccagagaaacatcaccttatttggctaatctccttttgggtttgcttcagagaaaccaaaaagatagaatggactttgaagcattttttagccatccttttcttgagcaaggtccagtaaaaaaatTTCCTGTTCCAGGTGCTGACTTTTATGATCTACATCGTGAGCACTGTGTTCTGCGGGCACCTGGGCAAGGTGGAGCTGGCATCGGTGACCCTCGCGGTGGCCTTTGTCAATGTCTGCGGAGTTTCTGTAGGAGTTGGTTTGTCTTCGGCATGTGACACCTTGATGTCTCAGAGCTTCGGCAGCCCCAACAAGAAGCACGTGGGCGTGATCCTGCAGCGGGGCGCGCTGGTCCTGCTCCTCTGCTGCCTCCCTTGCTGGGCGCTCTTCCTCAACACCCAGCACATCCTGCTGCTCTTCCGGCAGGACCCGGACGTGTCCAGGTTGACCCAGGACTATGTAATGATTTTCATTCCAGGACTTCCGGTGATTTTTCTTTACAATCTGCTGGCAAAATATTTGCAAAATCAGGGATGGCTGAAGGGGCAGGAGGAGGAGTCCCCATTCCAAACCCCGGGTTTGTCCATCCTCCATCCATCTCACTCACACCTTAGCAGGGCCAGTTTTCATTTATTTCAGAAGATCACCTGGCCCCAAGTCCTCAGTGGTGTGGTGGGCAACTGTGTCAACGGTGTGGCCAACTATGCCCTGGTTTCTGTGCTGAACCTGGGGGTCAGGGGCTCCGCCTATGCCAACATCATCTCCCAGTTTGCACAGACCGTCTTCCTCCTTCTCTACATTGTGCTGAAGAAGCTGCACCTGGAGACGTGGGCAGGTTGGTCCAGCCAGTGCCTGCAGGACTGGGGCCCCTTCTTCTCCCTGGCTGTCCCCAGCATGCTCATGATCTGTGTTGAGTGGTGGGCCTATGAGATCGGGAGCTTCCTCATGGGGCTGCTCAGTGTGGTGGATCTCTCTGCCCAGGCTGTCATCTACGAGGTGGCCACTGTGACCTACATGATTCCCTTGGGGCTCAGCATCGGGGTCTGTGTCCGAGTGGGGATGGCTCTGGGGGCTGCGGATACTGTGCAGGCCAAGCGCTCGGCCGTCTCGGGCGTGCTCAGCATAGTTGGCATTTCCCTGGTCCTGGGCACCCTGATAAGCATCCTGAAAAATCAGCTGGGGCATATTTTTACCAATGATGAAGATGTCATTGCCCTGGTGAGCCAGGTCTTGCCGGTTTATAGTGTCTTTCACGTGTTTGAGGCCATCTGTTGTGTCTATGGCGGAGTTCTGAGAGGAACTGGGAAGCAGGCCTTTGGTGCCGCTGTGAATGCCATCACATATTACATCATCGGCCTACCACTGGGCATCCTTCTGACCTTTGTGGTCAGAATGAGAATCATGGGCCTCTGGCTGGGCATGCTGGCCTGTGTCTTCCTGGCAACTGCTGCCTTTGTTGCTTATACTGCCCGGCTGGACTGGAAGCTTGCTGCAGAGGAGGCTAAGAAACATTCAGGCCGGCAGCAGCAGCAGAGAGCAGAGAGCACTGCAACCAGACCTGGGCCTGAGAAAGCAGTCCTATCTTCAGTGGCTACAGGCAGTTCCCCTGGCATTACCTTGACAACGTATTCAAGGTCTGAGTGCCACGTGGACTTCTTCAGGACTCCAGAGGAGGCCCACGCCCTTTCAGCTCCTACCAGCAGACTATCAGTGAAACAGCTGGTCATCCGCCGTGGGGCTGCTCTGGGGGCGGCGTCAGCCACACTGATGGTGGGGCTCACGGTCAGGATCCTAGCCACCAGGCACTAG MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANRRKSSVSGIRIKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQGPVKKFPVPGADFYDLHREHCVLRAPGQGGAGIGDPRGGLCQCLRSFCRSWFVFGM*HLDVSELRQPQQEARGRDPAAGRAGPAPLLPPLLGALPQHPAHPAALPAGPGRVQVDPGLCNDFHSRTSGDFSLQSAGKIFAKSGMAEGAGGGVPIPNPGFVHPPSISLTP*QGQFSFISEDHLAPSPQWCGGQLCQRCGQLCPGFCAEPGGQGLRLCQHHLPVCTDRLPPSLHCAEEAAPGDVGRLVQPVPAGLGPLLLPGCPQHAHDLC*VVGL*DRELPHGAAQCGGSLCPGCHLRGGHCDLHDSLGAQHRGLCPSGDGSGGCGYCAGQALGRLGRAQHSWHFPGPGHPDKHPEKSAGAYFYQ**RCHCPGEPGLAGL*CLSRV*GHLLCLWRSSERNWEAGLWCRCECHHILHHRPTTGHPSDLCGQNENHGPLAGHAGLCLPGNCCLCCLYCPAGLEACCRGG*ETFRPAAAAESREHCNQTWA*ESSPIFSGYRQFPWHYLDNVFKV*VPRGLLQDSRGGPRPFSSYQQTISETAGHPPWGCSGGGVSHTDGGAHGQDPSHQAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase ULK2 Other ULK Q8IYT8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29311 PNO1::ZFPM2-AS1 ENSG00000115946.8::ENSG00000251003.9 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PNO1 ENSG00000115946.8 protein_coding + + chr2:68157888-68176238:+ chr2:68162663:+ chr2:68385020-68403370:+ chr2:68389795:+ ZFPM2-AS1 ENSG00000251003.9 lncRNA - - chr8:105546089-106060524:- chr8:105787596:- chr8:106558317-107072752:- chr8:106799824:- chr2:68163033 chr8:105796251 NA NA chr2:68390165 chr8:106808479 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr8] 12 5 12 5 ONLY_REF_SPLICE YES_LDAS 0.1951 GT 1.6895 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29314 MKRN2::TSEN2 ENSG00000075975.17::ENSG00000154743.19 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 572 TRUE 1039 TRUE 386 MKRN2 ENSG00000075975.17 protein_coding + + chr3:12557057-12586208:+ chr3:12557176:+ chr3:12598556-12627707:+ chr3:12598675:+ TSEN2 ENSG00000154743.19 protein_coding + + chr3:12484421-12541549:+ chr3:12529762:+ chr3:12525920-12583048:+ chr3:12571261:+ chr3:12561533 chr3:12523344 NA NA chr3:12603032 chr3:12564843 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-CCCH_3-PARTIAL|1-26~|4.9e-08^Torus-PARTIAL|3-26~|7.7e-07^zf-CCCH-PARTIAL|6-26~|6.1e-07^zf-RING_2|6-16|2.9^zf-CCCH_4-PARTIAL|7-26~|3.7e-07^zf_CCCH_4|8-26|2e-08^zf-CCCH_2|8-26|3e-05^zf-C3HC4|12-26|4.5 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.02Mb];LOCAL_REARRANGEMENT:+:[17391] 11 2 11 0.76 ONLY_REF_SPLICE YES_LDAS 0.1349 GT 1.9899 AG 1.5546 ENST00000677816.1 1-26 ENST00000680857.1 1137-1551 chr3|+|[0]12557151-12557176[1]<==>chr3|+|[2]12529762-12529873[2]|[0]12531570-12531659[2]|[0]12539161-12539373[2] atgagcaccaagcagatcacttgcagTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAGTCTCGCTCTGTCGTCCAGGCTGGAGTCCAATGCTGCGATCTTGGATCACTGCAACCTCTGCCTGCTGGGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACCACCACACACGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGA MSTKQITCSYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELMLCYLIKPSTMTDKEMESPECMKRIKVQSRSVVQAGVQCCDLGSLQPLPAGFKRFSCLSLLSSWDYRHAPPHTANFCIFSRDGVSLCWPGWSGTPDLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29316 MARS1::BTG1-DT ENSG00000166986.15::ENSG00000245904.6 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57490644:+ chr12:57869228-57911352:+ chr12:57884427:+ BTG1-DT ENSG00000245904.6 lncRNA + + chr12:92145573-92226557:+ chr12:92213833:+ chr12:92539349-92620333:+ chr12:92607609:+ chr12:57492258,chr12:57492270 chr12:92203304,chr12:92203307 NA NA chr12:57886041,chr12:57886053 chr12:92597080,chr12:92597083 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1721 GT 1.9086 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29318 RIMS2::ADGRL3 ENSG00000176406.25::ENSG00000150471.17 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103975506:+ chr8:104512838-105266658:+ chr8:104987734:+ ADGRL3 ENSG00000150471.17 protein_coding + + chr4:61200326-62078335:+ chr4:61497121:+ chr4:62066044-62944053:+ chr4:62362839:+ chr8:103983607,chr8:103983608 chr4:61424102,chr4:61424100 NA NA chr8:104995835,chr8:104995836 chr4:62289820,chr4:62289818 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 8 6 8 6 ONLY_REF_SPLICE YES_LDAS 0.1606 GT 1.6402 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29323 MTMR3::EPIC1 ENSG00000100330.16::ENSG00000224271.8 TE5 SRR8615469 SRR8670676 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 575 FALSE NA FALSE NA MTMR3 ENSG00000100330.16 protein_coding + + chr22:29883169-30030868:+ chr22:29883359:+ chr22:30279158-30426857:+ chr22:30279348:+ EPIC1 ENSG00000224271.8 lncRNA + + chr22:47630827-48023004:+ chr22:48013741:+ chr22:48026576-48418772:+ chr22:48409499:+ chr22:29930536,chr22:29930527 chr22:47878000,chr22:47877988 NA NA chr22:30326525,chr22:30326516 chr22:48273749,chr22:48273737 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MTMR3:Oncogene"] 5 7 5 4.38 ONLY_REF_SPLICE YES_LDAS 0.1076 GT 1.8062 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29326 ANAPC11::ASPSCR1 ENSG00000141552.18::ENSG00000169696.16 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ANAPC11 ENSG00000141552.18 protein_coding + + chr17:81890790-81900991:+ chr17:81894586:+ chr17:79848666-79858867:+ chr17:79852462:+ ASPSCR1 ENSG00000169696.16 protein_coding + + chr17:81976807-82017406:+ chr17:82009037:+ chr17:79934683-79975282:+ chr17:79966913:+ chr17:81899302,chr17:81899298 chr17:82003929,chr17:82003926 NA NA chr17:79857178,chr17:79857174 chr17:79961805,chr17:79961802 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["ASPSCR1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];NEIGHBORS[75816] 68 37 68 37 ONLY_REF_SPLICE YES_LDAS 1.2472 GT 1.9329 AG 1.6895 ENST00000612413.4 1-51 ENST00000306729.11 934-1944 chr17|+|[0]81894536-81894586[2]<==>chr17|+|[0]82009037-82009191[1]|[2]82009486-82009567[2]|[0]82010802-82010868[0]|[1]82011543-82011605[0]|[1]82012231-82012283[2]|[0]82015075-82015356[2]|[0]82016476-82016527[0]|[1]82016800-82016869[1]|[2]82016941-82017113[0]|[1]82017309-82017322[2] atgagaactgtggcatctgcaggatggcatttaacggatgctgccctgactCCCGTGGACCGGGAGCCCGTGGACCGGGAGCCGGTGGTGTGCCACCCCGACCTGGAGGAGCGGCTGCAGGCCTGGCCAGCGGAGCTGCCTGATGAGTTCTTTGAGCTGACGGTGGACGACGTGAGAAGACGCTTGGCCCAGCTCAAGAGTGAGCGGAAGCGCCTGGAAGAAGCCCCCTTGGTGACCAAGGCCTTCAGGGAGGCGCAGATAAAGGAGAAGCTGGAGCGCTACCCAAAGGTGGCTCTGAGGGTCCTGTTCCCCGACCGCTACGTCCTACAGGGCTTCTTCCGCCCCAGCGAGACAGTGGGGGACTTGCGAGACTTCGTGAGGAGCCACCTGGGGAACCCCGAGCTGTCATTTTACCTGTTCATCACCCCTCCAAAAACAGTCCTGGACGACCACACGCAGACCCTCTTTCAGCCCCAGCTTGGTGACCGGGTGGCTCCATTCACCCTGGGTCCCTCGCTGAAACGGTGCCTGGGACCAGAGCAGAGAACACGCTTGCCAGTGGTAGGAGATGGAGGCGACGTGGACTCTGGGAGGCTTCTTTTTTGGGGTCCATCCAGAGGCCGAGCCTCTCCAAGCACTGGTCAGCCTCCATGCCACCCAGTCTGCCGACCCTCCTCTCCACCATCCCCTCGTCCGAGCAGTGGCGATCCCTCCCGAGTCAAGGCTGGGCACAAGCACGTGGGGACAGGCCGGGCGAACCTCTTCCCGGCCGCTCTGGTGCACTTGGGAGCCGAGGAGCCGGCAGGTGTCTACCTGGAGCCTGGCCTGCTGGAGCATGCCATCTCCCCATCTGCGGCCGATGTGCTGGTGGCCAGGTACATGTCCAGGGCCGCCGGGTCCCCTTCCCCATTGCCAGCCCCTGACCCTGCACCTAAGTCTGAGCCAGCTGCTGAGGAGGGGGCGCTGGTCCCCCCTGAGCCCATCCCAGGGACGGCCCAGCCCGTGAAGAGGAGCCTGGGCAAGGTGCCCAAGTGGCTGAAGCTGCCGGCCAGCAAGAGGTGA MRTVASAGWHLTDAALTPVDREPVDREPVVCHPDLEERLQAWPAELPDEFFELTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELSFYLFITPPKTVLDDHTQTLFQPQLGDRVAPFTLGPSLKRCLGPEQRTRLPVVGDGGDVDSGRLLFWGPSRGRASPSTGQPPCHPVCRPSSPPSPRPSSGDPSRVKAGHKHVGTGRANLFPAALVHLGAEEPAGVYLEPGLLEHAISPSAADVLVARYMSRAAGSPSPLPAPDPAPKSEPAAEEGALVPPEPIPGTAQPVKRSLGKVPKWLKLPASKR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE alveolar soft part sarcoma chromosome region, candidate 1 1 alveolar soft part sarcoma mesenchymal fusion translocation 29327 C1orf159::PRKCZ ENSG00000131591.18::ENSG00000067606.17 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA C1orf159 ENSG00000131591.18 protein_coding - - chr1:1081818-1116361:- chr1:1090353:- chr1:1017198-1051741:- chr1:1025733:- PRKCZ ENSG00000067606.17 protein_coding + + chr1:2050411-2185395:+ chr1:2169518:+ chr1:1981850-2116834:+ chr1:2100957:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.93Mb] 57 35 57 35 ONLY_REF_SPLICE YES_LDAS 1.0927 GT 1.7819 AG 1.7465 ENST00000467751.5 1-245 ENST00000400921.6 426-1230 chr1|-|[1]1090353-1090428[1]|[0]1091278-1091374[0]|[2]1091472-1091543[0]<==>chr1|+|[2]2169518-2169604[1]|[2]2172055-2172190[2]|[0]2172301-2172388[0]|[1]2173897-2174016[0]|[1]2174754-2174833[2]|[0]2175224-2175313[2]|[0]2184583-2184698[1]|[2]2184922-2185009[2] atggcgctgcggcacctcgccctcctggctggccttctcgtgggagtcgccagcaagtccatggagaacacggacactgatgtcccagccccagaggtgctgaccaggtccactgctggggtcagaggggcctgtgcctcgcagaggggagccctccgctgcctgctgggcccagctgcccgagtgctgtgtggatgtggtgggcgtcaacgccagctgcccaggcgcaagtctgtgtggtccagGTTGTTCCTGGTCATTGAGTACGTCAACGGCGGGGACCTGATGTTCCACATGCAGAGGCAGAGGAAGCTCCCTGAGGAGCACGCCAGGTTCTACGCGGCCGAGATCTGCATCGCCCTCAACTTCCTGCACGAGAGGGGGATCATCTACAGGGACCTGAAGCTGGACAACGTCCTCCTGGATGCGGACGGGCACATCAAGCTCACAGACTACGGCATGTGCAAGGAAGGCCTGGGCCCTGGTGACACAACGAGCACTTTCTGCGGAACCCCGAATTACATCGCCCCCGAAATCCTGCGGGGAGAGGAGTACGGGTTCAGCGTGGACTGGTGGGCGCTGGGAGTCCTCATGTTTGAGATGATGGCCGGGCGCTCCCCGTTCGACATCATCACCGACAACCCGGACATGAACACAGAGGACTACCTTTTCCAAGTGATCCTGGAGAAGCCCATCCGGATCCCCCGGTTCCTGTCCGTCAAAGCCTCCCATGTTTTAAAAGGATTTTTAAATAAGGACCCCAAAGAGAGGCTCGGCTGCCGGCCACAGACTGGATTTTCTGACATCAAGTCCCACGCGTTCTTCCGCAGCATAGACTGGGACTTGCTGGAGAAGAAGCAGGCGCTCCCTCCATTCCAGCCACAGATCACAGACGACTACGGTCTGGACAACTTTGACACACAGTTCACCAGCGAGCCCGTGCAGCTGACCCCAGACGATGAGGATGCCATAAAGAGGATCGACCAGTCAGAGTTCGAAGGCTTTGAGTATATCAACCCATTATTGCTGTCCACCGAGGAGTCGGTGTGA MALRHLALLAGLLVGVASKSMENTDTDVPAPEVLTRSTAGVRGACASQRGALRCLLGPAARVLCGCGGRQRQLPRRKSVWSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEKKQALPPFQPQITDDYGLDNFDTQFTSEPVQLTPDDEDAIKRIDQSEFEGFEYINPLLLSTEESV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Protein kinase C zeta type AGC PKC PKCi Q05513 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29329 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 580 TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12927803:+ chr12:13080646-13137579:+ chr12:13080737:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12812261:+ chr12:12878851-12982909:+ chr12:12965195:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCGA_StarF2019","CCLE_StarF2019"] 24 0 24 0 ONLY_REF_SPLICE YES_LDAS 0.2851 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29331 TUBGCP6::MAPK12 ENSG00000128159.12::ENSG00000188130.14 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 578 TRUE 1056 TRUE 1794 TUBGCP6 ENSG00000128159.12 protein_coding - - chr22:50217689-50245023:- chr22:50218488:- chr22:50656118-50683452:- chr22:50656917:- MAPK12 ENSG00000188130.14 protein_coding - - chr22:50245450-50261716:- chr22:50258301:- chr22:50683879-50700145:- chr22:50696730:- chr22:50218187,chr22:50218190 chr22:50260188,chr22:50260188 NA NA chr22:50656616,chr22:50656619 chr22:50698617,chr22:50698617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GCP6_N|28-342|2.9e-157^GCP5-Mod21_C|349-407|3.8e-05^GCP_N_terminal|353-621|1.3e-37^GCP_C_terminal|704-715|5.4^DUF4573|1042-1182|6.3e-05^ERbeta_N|1049-1080|0.011^ERbeta_N|1066-1105|0.0061^ERbeta_N|1083-1134|0.004^ERbeta_N|1114-1161|0.003^ERbeta_N|1138-1187|0.0023^DUF4573|1147-1242|0.0012^ERbeta_N|1165-1217|0.001^GCP_C_terminal|1513-1816|1.2e-62 Pkinase-PARTIAL|~256-311|2.9e-69^Peripla_BP_5|294-348|3e-05 ["MAPK12:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[458] 21 12 21 5.48 ONLY_REF_SPLICE YES_LDAS 0.3145 GT 1.7819 AG 1.7465 ENST00000248846.10 1-4954 ENST00000215659.13 256-1104 chr22|-|[0]50218488-50218620[0]|[2]50218703-50218897[0]|[2]50219068-50219209[2]|[1]50219288-50219456[1]|[0]50219644-50219791[0]|[2]50219957-50220015[1]|[0]50220251-50221874[0]|[2]50222028-50222102[0]|[2]50222454-50222592[2]|[1]50224141-50224256[0]|[2]50224332-50224420[1]|[0]50224511-50224592[0]|[2]50225794-50225943[0]|[2]50226050-50226189[1]|[0]50226287-50226378[2]|[1]50226733-50226842[0]|[2]50226999-50227077[2]|[1]50227907-50228028[0]|[2]50229404-50229577[0]|[2]50233316-50233526[2]|[1]50240204-50240367[0]|[2]50243719-50244459[0]<==>chr22|-|[2]50253401-50253480[1]|[0]50255197-50255370[1]|[0]50255453-50255531[0]|[2]50255615-50255694[1]|[0]50255810-50255881[1]|[0]50256085-50256199[0]|[2]50256599-50256646[0]|[2]50256935-50256964[0]|[2]50257082-50257193[2]|[1]50258243-50258301[0] atggccagcatcacgcagctgttcgacgacctgtgtgaggccctcctgccggctgccaagactcacctgggccagcgcagtgtgaaccggaagagggcaaagcggagcctcaagaaggtggcctacaatgctcttttcacaaatctttttcaagatgagactcaacagctgcagcctgacatgtcaaaactaccagcgagaaacaagatcctcatgttgtcctttgacttgagagtgggtggcctgggccccaaggccgaccgtttggaggagcttgtggaggagctggaagcagccccttgctgtccgcttttggaggtggggtctgttttggacctcctggttcagctggcagggagtggtccccctcaagttctgccgagaaaacgagactacttccttaacaacaagcatgtggggagaaacgttccgtacagcggctatgattgcgacgacctgagtgtgtttgagatggacgttcagtctctgatctccagagaagagtgtttgtgtcacagcatgatccaggaaacacttcaggttatggaggctgctccaggcactggcctgcccaccgtcgggctcttctcatttggtgacccttgtggtgacaggttcgagagagacacccgggtctcgctcttcggggcccttgtgcacagccgcacttatgacatggacgtccgactgggcctgccccccgtgccagacaatgcggacctctctgggctggctattaaggtcccaccgagtgtggatcagtgggaagacgaaggattccagtcagcgtccaacttgactcctgattcccagtctgagcccagcgtgaccccagacgtggacctgtgggaagccgcacttacctatgaggccagcaagcggaggtgctgggagcgagttggctgcccccctggccacagagaggagccttacctgacggaggcgggaagggacgctttcgacaagttctgcaggctccaccaaggggagctccagctgcttgctgggggcgtcctacaggccccgcagcccgtgctggtgaaggagtgcgagctggtgaaagacgtgctgaacgtcttgattggggtcgtgtctgccacgttttcgctctgccagccggcccaggcctttgtggtgaagcggggcgtccacgtgtcaggagcgtctcccgagagcatcagcagcctgctctcggaagtggccgagtatgggacctgctacacgcgcctgagtcatttctctctgcagcccgtcctggactctttgtacagcaagggcctcgtgttccaggccttcaccagtggcctgaggaggtacctgcagtattaccgggcctgcgtcctttccactccgcccaccctgagcctcctcaccattggttttctcttcaagaaacttggccggcagctcaggtacctggccgagctctgtggcgttggcgctgtgctcccgggcacctgtggaggaggccccagggccgcgtttcccaccggcgtgaagctgctgtcctacctctaccaggaggctctgcacaactgcagcaacgagcactaccctgtactgctgtccctgctgaagaccagctgcgagccctacacccggttcatccacgactgggtgtacagcggggtgttcagagacgcttatggcgagttcatgattcaggtgaaccacgagtacctcagcttccgagataagttgtactggacacatggctacgtgctcatctccaaagaggtggaggactgtgttcccgtgtttctgaagcacattgcccacgacatatacgtctgcggaaagaccattaacctgctgaagctctgctgcccccggcattacctctgttggtccgacgtccctgtcccccggatctcggtgattttctcccttgaggagttgaaggagattgagaaggactgtgccgtctacgttgggcgcatggagagggtggcccgccacagctctgtcagcaaggaggagaaggaattacgtatggaaattgcaaaacaagaattaatcgctcatgcccgggaagcagcatccagggtcctgagtgcactgagtgaccggcagatgtcagaacggatggccttggatgcccggaagcgtgagcagtttcagaggctgaaagaacaatttgtgaaggaccaggagcgacgccaggcggccaggcaggaggagctggatgatgacttcagctacgcccgtgaactccgagacagggagagaaggctgaagtccctggaggaggagctggagaggaaggcgaggcaggcactggtcgaccactacagcaagctctctgcagaggcagctcgtcgggagcagaaggcactgtggagaatccagaggcaccgactggagagtgcacggcttcgttttctcttagaagatgagaaacacattcaggagatgctgaaagcagtgtctgaggctcaccagccccaggagccgccagacgtcctcttgagcgtgcacccccaggtcacgtctccgggccctgagcacccagagggaggccaaggctgtgattctgggtctgcagagcaacactcgcctgcctgggatggctggaacaggccaggcctgctgaccccacagccccttaagcctctagcagtgggggctggtggcagggggctgcagcaggcggagggggccagacccttctctgacagcctcagcattggagacttcctacctgtgggcccaggggctgagccgtccgtgcagactggcatggtccctctcctggaggtggcgctgcagaccattaacttggacctgcccccctcagctcctggggaggcacccgcagcagccagcactcagccctccaggccacaggagtacgactttagtactgtcctgaggccagctgtggccacctcacctgcaccagggcccctgcaggctgcagagtgcagcttgggcagctcagggctacagctgtgggaggacagttgtgggaagatggatgcctgtggctccgcctcgcgggagactctgctcccctcacacccacccaggcgtgctgctctggaggaggggagcagccagcccacagagcggctctttgggcaggtgtcagggggtggtcttcccacaggggactacgcttctgaaatagctcccacccggccacggtggaacacccacgggcacgtgtctgacgccagcatcagggtcggggagaatgtgtcagatgtggctcccacccagccacggtggaacacccacggacacgtatccaatgccagcatcagcttaggggagtctgtgtcagatgtggctcccactcggccacggtggaacatccatggacatgtgtccaacgccagcatcagggtcggggagaatgtgtcagatgtggctcccaccaggccacggtggaatacccacgggcacgtgtccaacgccagcatcagggttggggagaacgtgtcggacgtggctcccacccggccacggtggaacacccatggacacgtgtccgatgccagcatcagcttgggggagtctgtgtcagacatggctcccgcccggccacggtggaacacccatggacacgtgtctgatgccagcatcagcttgggggagtctgtgtcagacatggctcccacccggccacggtggaacacccacggacatgtgtctgacaccagcatcagggttggggagaacgtatcggacgtggctcccatccggtcacggtgcaacacccatggacacgtgtccgacgccagcatcagcttgggggagcctgtgtcggatgtggtttccacccggccacggtggaacacccatgtacccatccctccgccccacatggtgctgggggctctctcaccagaagctgagcccaacacacccaggccccaacagagcccccctggccacacgtcccagtcagcgctcagcctgggagcacagagcactgtgctggactgtgggccacggctgcctgtagaagtggggccatctctgtcctcccccagctcgggctgcggggaggggagcatcagcgtgggggagaacgtgtcagacgtggctcccacccaaccatggtggcccaacaccccgggagacagtgtctctgaagaactaggccctgggaggagcggggacactgaggacctctctccaaattggcctctcaactcacaggaagacacagctgcccagagcagcccaggccgtggtgaggaggcggaggcatcggcggcggaggctcagggtggggagcaggcctacctggcaggcctggcagggcagtaccacttggagcggtacccggacagttacgagtccatgtccgagccgcccattgctcatcttttgcgccccgtgcttccccgggccttcgccttccccgtggacccccaggtccagtctgccgctgatgagactgctgtgcagctgagcgagttgctgacgctgcccgtgctcatgaagcgctccatcacggcaccgctggccgcccacatctccttggtgaacaaggccgctgtcgactacttcttcgtggagctgcacctggaggcgcactatgaggcactgcggcacttcctgctgatggaggacggcgagttcgcccagtccctcagcgacctgctctttgagaagcttggagctgggcaaacgcccggagagctgctcaacccgctggtgctgaactctgtgctgagcaaggccctgcagtgcagcctgcatggggacaccccgcacgcctccaacctctccctcgctctcaagtacctgcccgaggtgtttgcccccaacgccccggatgtgctgagctgcctggagctcaggtacaaggtggactggcctctcaacattgtcatcaccgagggctgcgtgagcaagtacagcggcgtcttctccttcctgctgcagctgaagctcatgatgtgggcgctcaaggacgtctgcttccacctcaagcgcacagGTGATCGGGCTGCTGGACGTATTCACTCCTGATGAGACCCTGGATGACTTCACGGACTTTTACCTGGTGATGCCGTTCATGGGCACCGACCTGGGCAAGCTCATGAAACATGAGAAGCTAGGCGAGGACCGGATCCAGTTCCTCGTGTACCAGATGCTGAAGGGGCTGAGGTATATCCACGCTGCCGGCATCATCCACAGAGACCTGAAGCCCGGCAACCTGGCTGTGAACGAAGACTGTGAGCTGAAGATCCTGGACTTCGGCCTGGCCAGGCAGGCAGACAGTGAGATGACTGGGTACGTGGTGACCCGGTGGTACCGGGCTCCCGAGGTCATCTTGAATTGGATGCGCTACACGCAGACGGTGGACATCTGGTCTGTGGGCTGCATCATGGCGGAGATGATCACAGGCAAGACGCTGTTCAAGGGCAGCGACCACCTGGACCAGCTGAAGGAGATCATGAAGGTGACGGGGACGCCTCCGGCTGAGTTTGTGCAGCGGCTGCAGAGCGATGAGGCCAAGAACTACATGAAGGGCCTCCCCGAATTGGAGAAGAAGGATTTTGCCTCTATCCTGACCAATGCAAGCCCTCTGGCTGTGAACCTCCTGGAGAAGATGCTGGTGCTGGACGCGGAGCAGCGGGTGACGGCAGGCGAGGCGCTGGCCCATCCCTACTTCGAGTCCCTGCACGACACGGAAGATGAGCCCCAGGTCCAGAAGTATGATGACTCCTTTGACGACGTTGACCGCACACTGGATGAATGGAAGCGTGTTACTTACAAAGAGGTGCTCAGCTTCAAGCCTCCCCGGCAGCTGGGGGCCAGGGTCTCCAAGGAGACGCCTCTGTGA MASITQLFDDLCEALLPAAKTHLGQRSVNRKRAKRSLKKVAYNALFTNLFQDETQQLQPDMSKLPARNKILMLSFDLRVGGLGPKADRLEELVEELEAAPCCPLLEVGSVLDLLVQLAGSGPPQVLPRKRDYFLNNKHVGRNVPYSGYDCDDLSVFEMDVQSLISREECLCHSMIQETLQVMEAAPGTGLPTVGLFSFGDPCGDRFERDTRVSLFGALVHSRTYDMDVRLGLPPVPDNADLSGLAIKVPPSVDQWEDEGFQSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRRCWERVGCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHFSLQPVLDSLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLTIGFLFKKLGRQLRYLAELCGVGAVLPGTCGGGPRAAFPTGVKLLSYLYQEALHNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGKTINLLKLCCPRHYLCWSDVPVPRISVIFSLEELKEIEKDCAVYVGRMERVARHSSVSKEEKELRMEIAKQELIAHAREAASRVLSALSDRQMSERMALDARKREQFQRLKEQFVKDQERRQAARQEELDDDFSYARELRDRERRLKSLEEELERKARQALVDHYSKLSAEAARREQKALWRIQRHRLESARLRFLLEDEKHIQEMLKAVSEAHQPQEPPDVLLSVHPQVTSPGPEHPEGGQGCDSGSAEQHSPAWDGWNRPGLLTPQPLKPLAVGAGGRGLQQAEGARPFSDSLSIGDFLPVGPGAEPSVQTGMVPLLEVALQTINLDLPPSAPGEAPAAASTQPSRPQEYDFSTVLRPAVATSPAPGPLQAAECSLGSSGLQLWEDSCGKMDACGSASRETLLPSHPPRRAALEEGSSQPTERLFGQVSGGGLPTGDYASEIAPTRPRWNTHGHVSDASIRVGENVSDVAPTQPRWNTHGHVSNASISLGESVSDVAPTRPRWNIHGHVSNASIRVGENVSDVAPTRPRWNTHGHVSNASIRVGENVSDVAPTRPRWNTHGHVSDASISLGESVSDMAPARPRWNTHGHVSDASISLGESVSDMAPTRPRWNTHGHVSDTSIRVGENVSDVAPIRSRCNTHGHVSDASISLGEPVSDVVSTRPRWNTHVPIPPPHMVLGALSPEAEPNTPRPQQSPPGHTSQSALSLGAQSTVLDCGPRLPVEVGPSLSSPSSGCGEGSISVGENVSDVAPTQPWWPNTPGDSVSEELGPGRSGDTEDLSPNWPLNSQEDTAAQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHLERYPDSYESMSEPPIAHLLRPVLPRAFAFPVDPQVQSAADETAVQLSELLTLPVLMKRSITAPLAAHISLVNKAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKALQCSLHGDTPHASNLSLALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCVSKYSGVFSFLLQLKLMMWALKDVCFHLKRTGDRAAGRIHS**DPG*LHGLLPGDAVHGHRPGQAHET*EARRGPDPVPRVPDAEGAEVYPRCRHHPQRPEARQPGCERRL*AEDPGLRPGQAGRQ*DDWVRGDPVVPGSRGHLELDALHADGGHLVCGLHHGGDDHRQDAVQGQRPPGPAEGDHEGDGDASG*VCAAAAER*GQELHEGPPRIGEEGFCLYPDQCKPSGCEPPGEDAGAGRGAAGDGRRGAGPSLLRVPARHGR*APGPEV**LL*RR*PHTG*MEACYLQRGAQLQASPAAGGQGLQGDASV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mitogen-activated protein kinase 12 CMGC MAPK p38 P53778 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29332 TUBGCP6::MAPK12 ENSG00000128159.12::ENSG00000188130.14 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1056 TRUE 1794 TUBGCP6 ENSG00000128159.12 protein_coding - - chr22:50217689-50245023:- chr22:50218279:- chr22:50656118-50683452:- chr22:50656708:- MAPK12 ENSG00000188130.14 protein_coding - - chr22:50245450-50261716:- chr22:50258301:- chr22:50683879-50700145:- chr22:50696730:- chr22:50218187,chr22:50218190 chr22:50260188,chr22:50260188 NA NA chr22:50656616,chr22:50656619 chr22:50698617,chr22:50698617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GCP_C_terminal|199-344|3.5e-30^GCP_C_terminal|400-485|1.1e-11 Pkinase-PARTIAL|~256-311|2.9e-69^Peripla_BP_5|294-348|3e-05 ["MAPK12:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[458] 19 18 19 12.52 INCL_NON_REF_SPLICE YES_LDAS 0.3744 GT 1.8295 AG 1.7465 ENST00000425018.1 1-1104 ENST00000215659.13 256-1104 chr22|-|[2]50218279-50218370[1]|[0]50218488-50218620[0]|[2]50218703-50218897[0]|[2]50219068-50219209[2]|[1]50219288-50219456[1]|[0]50219644-50219791[0]|[2]50219957-50220015[1]|[0]50220251-50220416[0]<==>chr22|-|[2]50253401-50253480[1]|[0]50255197-50255370[1]|[0]50255453-50255531[0]|[2]50255615-50255694[1]|[0]50255810-50255881[1]|[0]50256085-50256199[0]|[2]50256599-50256646[0]|[2]50256935-50256964[0]|[2]50257082-50257193[2]|[1]50258243-50258301[0] ctggactgtgggccacggctgcctgtagaagtggggccatctctgtcctcccccagctcgggctgcggggaggggagcatcagcgtgggggagaacgtgtcagacgtggctcccacccaaccatggtggcccaacaccccgggagacagtgtctctgaagaactaggccctgggaggagcggggacactgaggacctctctccaaattggcctctcaactcacaggaagacacagctgcccagagcagcccaggccgtggtgaggaggcggaggcatcggcggcggaggctcagggtggggagcaggcctacctggcaggcctggcagggcagtaccacttggagcggtacccggacagttacgagtccatgtccgagccgcccattgctcatcttttgcgccccgtgcttccccgggccttcgccttccccgtggacccccaggtccagtctgccgctgatgagactgctgtgcagctgagcgagttgctgacgctgcccgtgctcatgaagcgctccatcacggcaccgctggccgcccacatctccttggtgaacaaggccgctgtcgactacttcttcgtggagctgcacctggaggcgcactatgaggcactgcggcacttcctgctgatggaggacggcgagttcgcccagtccctcagcgacctgctctttgagaagcttggagctgggcaaacgcccggagagctgctcaacccgctggtgctgaactctgtgctgagcaaggccctgcagtgcagcctgcatggggacaccccgcacgcctccaacctctccctcgctctcaagtacctgcccgaggtgtttgcccccaacgccccggatgtgctgagctgcctggagctcaggtacaaggtggactggcctctcaacattgtcatcaccgagggctgcgtgagcaagtacagcggcgtcttctccttcctgctgcagctgaagctcatgatgtgggcgctcaaggacgtctgcttccacctcaagcgcacagttccgtcagctgcagctgttcaagcacgagatgcagcatttcgtgaaggtcatccagggctacatcgccaaccagatcctgcacgtcacctgGTGATCGGGCTGCTGGACGTATTCACTCCTGATGAGACCCTGGATGACTTCACGGACTTTTACCTGGTGATGCCGTTCATGGGCACCGACCTGGGCAAGCTCATGAAACATGAGAAGCTAGGCGAGGACCGGATCCAGTTCCTCGTGTACCAGATGCTGAAGGGGCTGAGGTATATCCACGCTGCCGGCATCATCCACAGAGACCTGAAGCCCGGCAACCTGGCTGTGAACGAAGACTGTGAGCTGAAGATCCTGGACTTCGGCCTGGCCAGGCAGGCAGACAGTGAGATGACTGGGTACGTGGTGACCCGGTGGTACCGGGCTCCCGAGGTCATCTTGAATTGGATGCGCTACACGCAGACGGTGGACATCTGGTCTGTGGGCTGCATCATGGCGGAGATGATCACAGGCAAGACGCTGTTCAAGGGCAGCGACCACCTGGACCAGCTGAAGGAGATCATGAAGGTGACGGGGACGCCTCCGGCTGAGTTTGTGCAGCGGCTGCAGAGCGATGAGGCCAAGAACTACATGAAGGGCCTCCCCGAATTGGAGAAGAAGGATTTTGCCTCTATCCTGACCAATGCAAGCCCTCTGGCTGTGAACCTCCTGGAGAAGATGCTGGTGCTGGACGCGGAGCAGCGGGTGACGGCAGGCGAGGCGCTGGCCCATCCCTACTTCGAGTCCCTGCACGACACGGAAGATGAGCCCCAGGTCCAGAAGTATGATGACTCCTTTGACGACGTTGACCGCACACTGGATGAATGGAAGCGTGTTACTTACAAAGAGGTGCTCAGCTTCAAGCCTCCCCGGCAGCTGGGGGCCAGGGTCTCCAAGGAGACGCCTCTGTGA LDCGPRLPVEVGPSLSSPSSGCGEGSISVGENVSDVAPTQPWWPNTPGDSVSEELGPGRSGDTEDLSPNWPLNSQEDTAAQSSPGRGEEAEASAAEAQGGEQAYLAGLAGQYHLERYPDSYESMSEPPIAHLLRPVLPRAFAFPVDPQVQSAADETAVQLSELLTLPVLMKRSITAPLAAHISLVNKAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKALQCSLHGDTPHASNLSLALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCVSKYSGVFSFLLQLKLMMWALKDVCFHLKRTVPSAAAVQARDAAFREGHPGLHRQPDPARHLVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTEDEPQVQKYDDSFDDVDRTLDEWKRVTYKEVLSFKPPRQLGARVSKETPL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase 12 CMGC MAPK p38 P53778 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29333 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 579 TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12927803:+ chr12:13080646-13137579:+ chr12:13080737:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12808858:+ chr12:12878851-12982909:+ chr12:12961792:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCGA_StarF2019","CCLE_StarF2019"] 15 0 15 0 INCL_NON_REF_SPLICE YES_LDAS 0.1782 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29337 GPRC5D-AS1::APOLD1 ENSG00000247498.11::ENSG00000178878.13 SNUC2A SRR8615476 SRR8670716 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1057 TRUE 392 GPRC5D-AS1 ENSG00000247498.11 lncRNA + + chr12:12927712-12984645:+ chr12:12927803:+ chr12:13080646-13137579:+ chr12:13080737:+ APOLD1 ENSG00000178878.13 protein_coding + + chr12:12725917-12829975:+ chr12:12813325:+ chr12:12878851-12982909:+ chr12:12966259:+ chr12:12950119,chr12:12950121,chr12:12950115,chr12:12950116 chr12:12802687,chr12:12802687,chr12:12802678,chr12:12802680 NA NA chr12:13103053,chr12:13103055,chr12:13103049,chr12:13103050 chr12:12955621,chr12:12955621,chr12:12955612,chr12:12955614 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCGA_StarF2019","CCLE_StarF2019"] 9 0 9 0 INCL_NON_REF_SPLICE YES_LDAS 0.1069 GT 1.8323 AG 1.4716 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29341 CSE1L::ARFGEF2 ENSG00000124207.17::ENSG00000124198.10 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 581 FALSE NA FALSE NA CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49091022:+ chr20:47662783-47713497:+ chr20:47707559:+ ARFGEF2 ENSG00000124198.10 protein_coding + + chr20:48921711-49036693:+ chr20:49023051:+ chr20:47538248-47653230:+ chr20:47639588:+ chr20:49091516,chr20:49091523,chr20:49091537,chr20:49091540,chr20:49091541,chr20:49091543,chr20:49091542,chr20:49091552,chr20:49091558,chr20:49091562,chr20:49091501,chr20:49091502,chr20:49091507,chr20:49091510,chr20:49091511 chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462,chr20:49020462 NA NA chr20:47708053,chr20:47708060,chr20:47708074,chr20:47708077,chr20:47708078,chr20:47708080,chr20:47708079,chr20:47708089,chr20:47708095,chr20:47708099,chr20:47708038,chr20:47708039,chr20:47708044,chr20:47708047,chr20:47708048 chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999,chr20:47636999 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame IBN_N|29-102|1.1e-13^Xpo1|105-151|3.8e-06^Cse1|156-525|4.7e-159^Xpo1|223-275|0.11^IBN_N|284-304|0.82^CAS_CSE1|289-353|0.0048^CAS_CSE1|527-962|2.3e-185^Xpo1|666-690|0.67^IBN_N|734-774|0.95^Xpo1|749-780|0.73^Xpo1|768-794|1.2^Xpo1|929-970|0.53 none ["CSE1L:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr20:0.01Mb];LOCAL_REARRANGEMENT:+:[9553] 178 136 178 136 ONLY_REF_SPLICE YES_LDAS 4.1758 GT 1.8892 AG 1.9086 ENST00000262982.3 1-2365 ENST00000371917.5 4625-5358 chr20|+|[0]49058464-49058548[0]|[1]49063202-49063344[2]|[0]49066192-49066293[2]|[0]49066365-49066510[1]|[2]49067190-49067280[2]|[0]49068715-49068822[2]|[0]49070205-49070297[2]|[0]49072286-49072453[2]|[0]49072568-49072697[0]|[1]49074785-49074850[0]|[1]49075318-49075520[2]|[0]49076980-49077064[0]|[1]49078561-49078622[2]|[0]49084026-49084162[1]|[2]49085283-49085386[0]|[1]49088009-49088106[2]|[0]49089247-49089397[0]|[1]49089538-49089746[2]|[0]49090742-49090839[1]|[2]49090937-49091022[0]<==>chr20|+|[1]49023051-49023181[2]|[0]49025313-49025481[0]|[1]49028530-49028668[1]|[2]49032049-49032166[2]|[0]49033023-49033199[2] atggaactcagcgatgcaaatctgcaaacactaacagaatatttaaagaaaacacttgatcctgatcctgccatccgacgtccagctgagaaatttcttgaatctgttgaaggaaatcagaattatccactgttgcttttgacattactggagaagtcccaggataatgttatcaaagtatgtgcttcagtaacattcaaaaactatattaaaaggaactggagaattgttgaagatgaaccaaacaaaatttgtgaagccgatcgagtggccattaaagccaacatagtgcacttgatgcttagcagcccagagcaaattcagaagcagttaagtgatgcaattagcattattggcagagaagattttccacagaaatggcctgacttgctgacagaaatggtgaatcgctttcagagtggagatttccatgttattaatggagtcctccgtacagcacattcattatttaaaagataccgtcatgaatttaagtcaaacgagttatggactgaaattaagcttgttctggatgcctttgctttgcctttgactaatctttttaaggccactattgaactctgcagtacccatgcaaatgatgcctctgccctgaggattctgttttcttccctgatcctgatctcaaaattgttctatagtttaaactttcaggatctccctgaattttttgaagataatatggaaacttggatgaataattttcatactctcttaacattggataataagcttttacaaactgatgatgaagaggaagccggcttattggagctcttaaaatcccagatttgtgataatgccgcactctatgcacaaaagtacgatgaagaattccagcgatacctgcctcgttttgttacagccatctggaatttactagttacaacgggtcaagaggttaaatatgatttgttggtaagtaatgcaattcaatttctggcttcagtttgtgagagacctcattataagaatctatttgaggaccagaacacgctgacaagtatctgtgaaaaggttattgtgcctaacatggaatttagagctgctgatgaagaagcatttgaagataattctgaggagtacataaggagagatttggaaggatctgatattgatactagacgcagggctgcttgtgatctggtacgaggattatgcaagttttttgagggacctgtgacaggaatcttctctggttatgttaattccatgctgcaggaatacgcaaaaaatccatctgtcaactggaaacacaaagatgcagccatctacctagtgacatctttggcatcaaaagcccaaacacagaagcatggaattacacaagcaaatgaacttgtaaacctaactgagttctttgtgaatcacatcctccctgatttaaaatcagctaatgtgaatgaatttcctgtccttaaagctgacggtatcaaatatattatgatttttagaaatcaagtgccaaaagaacatcttttagtctcgattcctctcttgattaatcatcttcaagctgaaagtattgttgttcatacttacgcagctcatgctcttgaacggctctttactatgcgagggcctaacaatgccactctctttacagctgcagaaatcgcaccgtttgttgagattctgctaacaaaccttttcaaagctctcacacttcctggctcttcagaaaatgaatatattatgaaagctatcatgagaagtttttctctcctacaagaagccataatcccctacatccctactctcatcactcagcttacacagaagctattagctgttagtaagaacccaagcaaacctcactttaatcactacatgtttgaagcaatatgtttatccataagaataacttgcaaagctaaccctgctgctgttgtaaattttgaggaggctttgtttttggtgtttactgaaatcttacaaaatgatgtgcaagaatttattccatacgtctttcaagtgatgtctttgcttctggaaacacacaaaaatgacatcccgtcttcctatatggccttatttcctcatctccttcagccagtgctttgggaaagaacaggaaatattcctgctctagtgaggcttcttcaagcattcttagaacgcggttcaaacacaatagcaagtgctgcagctgacaaaattcctgggttactaggtgtctttcagaagctgattgcatccaaagcaaatgaccaccaaggtttttatcttctaaacagtataatagagcacatgcctcctgaatcagttgaccaatataggaaacaaatcttcattctgctattccagagacttcagaattccaaaacaaccaagtttatcaagaATCAGAAACTGTTTGCCAGCCTCCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTGACAACATTGTGTTCTACCCTGCGACGAGCAAAAAGGAGGATGCAGAGCACATGGTTGCCGCCCAGCAAGACACGCTGGATGCAGATATCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATGTCTTCCCAGCACCTCTTCAAGCTGTTGGACTGTTTGCAGGAATCCCATTCATTCTCAAAGGCCTTCAACTCCAATTACGAGCAGCGGACTGTCCTGTGGCGAGCAGGTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAGCAGCCTGGCCTGTTGTTTGAGGATCCTGTTTCGAATGTATGTTGATGAGAACCGCAGGGATTCCTGGGAAGAAATACAGCAGAGACTTTTAACTGTTTGCAGTGAAGCTCTTGCCTATTTCATCACTGTGAATTCTGAGAGCCATCGGGAGGCCTGGACAAGTCTCTTGTTGTTACTTCTAACTAAAACCCTCAAAATAAATGATGAAAAGTTCAAAGCACATGCTTCAATGTACTACCCCTACTTGTGTGAAATTATGCAGTTTGACCTGATCCCTGAGCTCCGAGCAGTTCTGCGGAAGTTCTTCCTACGGATAGGTGTTGTGTATAAGATATGGATACCAGAAGAGCCATCACAGGTACCAGCAGCACTGTCACCAGTGTGGTAG MELSDANLQTLTEYLKKTLDPDPAIRRPAEKFLESVEGNQNYPLLLLTLLEKSQDNVIKVCASVTFKNYIKRNWRIVEDEPNKICEADRVAIKANIVHLMLSSPEQIQKQLSDAISIIGREDFPQKWPDLLTEMVNRFQSGDFHVINGVLRTAHSLFKRYRHEFKSNELWTEIKLVLDAFALPLTNLFKATIELCSTHANDASALRILFSSLILISKLFYSLNFQDLPEFFEDNMETWMNNFHTLLTLDNKLLQTDDEEEAGLLELLKSQICDNAALYAQKYDEEFQRYLPRFVTAIWNLLVTTGQEVKYDLLVSNAIQFLASVCERPHYKNLFEDQNTLTSICEKVIVPNMEFRAADEEAFEDNSEEYIRRDLEGSDIDTRRRAACDLVRGLCKFFEGPVTGIFSGYVNSMLQEYAKNPSVNWKHKDAAIYLVTSLASKAQTQKHGITQANELVNLTEFFVNHILPDLKSANVNEFPVLKADGIKYIMIFRNQVPKEHLLVSIPLLINHLQAESIVVHTYAAHALERLFTMRGPNNATLFTAAEIAPFVEILLTNLFKALTLPGSSENEYIMKAIMRSFSLLQEAIIPYIPTLITQLTQKLLAVSKNPSKPHFNHYMFEAICLSIRITCKANPAAVVNFEEALFLVFTEILQNDVQEFIPYVFQVMSLLLETHKNDIPSSYMALFPHLLQPVLWERTGNIPALVRLLQAFLERGSNTIASAAADKIPGLLGVFQKLIASKANDHQGFYLLNSIIEHMPPESVDQYRKQIFILLFQRLQNSKTTKFIKNQKLFASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQHLFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWEEIQQRLLTVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKINDEKFKAHASMYYPYLCEIMQFDLIPELRAVLRKFFLRIGVVYKIWIPEEPSQVPAALSPVW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match TRUE Skin Cutaneous Melanoma,Kidney renal clear cell carcinoma,Breast invasive carcinoma SKIN,KIDNEY,BREAST no_match 47713123|47662960,47675085|47675085,47711500 FALSE|FALSE,FALSE|FALSE,FALSE 47615777|47641850,47648586|47649560,47641850 FALSE|FALSE,FALSE|FALSE,FALSE YES,PARTIALLY,YES 3UTR-CDS,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29345 PITPNA::SLC43A2 ENSG00000174238.16::ENSG00000167703.15 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 588 FALSE NA FALSE NA PITPNA ENSG00000174238.16 protein_coding - - chr17:1517718-1562792:- chr17:1558529:- chr17:1421012-1466086:- chr17:1461823:- SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1593279:- chr17:1472562-1532180:- chr17:1496573:- chr17:1557355 chr17:1594620 NA NA chr17:1460649 chr17:1497914 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame IP_trans-PARTIAL|30-117~|1.1e-49 MFS_1-PARTIAL|~502-554|4.1e-08 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[6451] 58 5 58 5 ONLY_REF_SPLICE YES_LDAS 0.8378 GT 1.7819 AG 1.8892 ENST00000573056.1 1-117 ENST00000571650.5 502-1722 chr17|-|[2]1558529-1558559[2]|[1]1559508-1559593[0]<==>chr17|-|[2]1575604-1575765[0]|[2]1576597-1576720[2]|[1]1578250-1578323[0]|[2]1583204-1583336[2]|[1]1585913-1586051[1]|[0]1586949-1586960[1]|[0]1590802-1590948[1]|[0]1591269-1591471[2]|[1]1591566-1591699[0]|[2]1593187-1593279[0] atgcaagacacaaaaggacccagagggctccagcaagggtctggggaccgaacgtctaagcttggaaactggctggacttgtatggtcgagtaatcctgcctgtgtctgtagatgagCTGCCCAACATGTTCGGCGACCTTCGGTCCACGTTTATTGCCTTGATGATTGGGTCCTACGCCTCCTCGGCAGTCACCTTTCCAGGAATCAAGCTCATCTATGATGCTGGTGTCTCCTTCATCGTCGTCCTCGTGGTCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAACTGCTTCTTTAACTGGCCCCTTGAGCCCTTCCCGGGGCCGGAGGACATGGACTACTCGGTGAAGATCAAGTTCAGCTGGCTGGGCTTTGACCACAAGATCACAGGGAAGCAGTTCTACAAGCAGGTGACCACGGTGGGCCGGCGCCTGAGTGTGGGCAGCTCCATGAGGAGTGCCAAGGAGCAGGTGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACCTGGAGGTGAAGTGCCAGCCGGATGCCGCAGTGGCCCCCTCCTTCATGCACAGCGTGTTCAGCCCCATCCTGCTGCTCAGCCTGGTCACCATGTGCGTCACGCAGCTGCGGCTCATCTTCTACATGGGGGCTATGAACAACATCCTCAAGTTCCTGGTCAGCGGCGACCAGAAGACAGTGATGGCCACGGTTGGCCTCTACACCTCCATCTTCGGCGTGCTCCAGCTGCTGTGCCTGCTGACGGCCCCCGTCATTGGCTACATCATGGACTGGAGGCTGAAGGAGTGTGAAGACGCCTCCGAGGAGCCCGAGGAGAAAGACGCCAACCAAGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAGATCCAGAAGATCACTAATGCCATGCGGGCCTTCGCCTTCACCAACCTGCTGCTCGTGGGCTTTGGGGTGACCTGCCTCATTCCCAACCTGCCTCTCCAGATCCTCTCCTTCATCCTGCACACAATCGTGCGAGGATTCATCCACTCCGCTGTCGGGGGCCTGTACGCTGCCGTGTACCCCTCCACCCAGTTCGGCAGCCTCACGGGACTGCAGTCTCTGATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCCAGGGAGACCCTCTGTGGGTGAACGTGGGGCTGCTCCTTCTCAGCCTGCTGGGCTTCTGCCTCCCGCTCTACCTGATCTGCTACCGGCGCCAGCTGGAGCGGCAGCTGCAGCAGAGGCAGGAGGATGACAAACTCTTCCTCAAAATCAACGGCTCGTCCAACCAGGAGGCCTTCGTGTAG MQDTKGPRGLQQGSGDRTSKLGNWLDLYGRVILPVSVDELPNMFGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGVSFIVVLVVWAGCSGLVFLNCFFNWPLEPFPGPEDMDYSVKIKFSWLGFDHKITGKQFYKQVTTVGRRLSVGSSMRSAKEQVALQEGHKLCLSTVDLEVKCQPDAAVAPSFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNNILKFLVSGDQKTVMATVGLYTSIFGVLQLLCLLTAPVIGYIMDWRLKECEDASEEPEEKDANQGEKKKKKRDRQIQKITNAMRAFAFTNLLLVGFGVTCLIPNLPLQILSFILHTIVRGFIHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQEDDKLFLKINGSSNQEAFV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match TRUE Kidney renal papillary cell carcinoma KIDNEY no_match 1442163 FALSE 1520063 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29347 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 584 TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58512852:- chr17:56566890-56595266:- chr17:56590213:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526313:- chr17:56597611-56621729:- chr17:56603674:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Septin-PARTIAL|~301-398|4.6e-136^RsgA_GTPase-PARTIAL|~301-302|0.0066^AAA_22|350-399|2.1^GTP_EFTU|354-366|0.32^AIG1|368-407|1.2^ABC_tran|387-408|3.6^Dynamin_N|432-454|7.3 none 43 18 43 11.73 ONLY_REF_SPLICE YES_LDAS 0.7279 GT 1.8892 AG 1.7819 ENST00000682306.1 1-135 ENST00000317256.10 301-1380 chr17|-|[2]58512852-58512941[0]|[2]58514363-58514407[0]<==>chr17|-|[2]58520426-58520485[0]|[2]58520743-58520842[2]|[1]58520998-58521160[1]|[0]58521254-58521350[0]|[2]58521545-58521646[0]|[2]58521736-58521853[2]|[1]58521967-58522101[2]|[1]58525078-58525201[1]|[0]58525695-58525781[1]|[0]58526220-58526313[0] atgagcctgaccgcccgcgtctcctgctccatgcttagctgcttcggtgaggaggggccccccagcctggagtacatccaagccaaggatctgttcccccccaaggaactagtgaaggaggaagagaatcttcagGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGACCGGAAACTTCTTGGTGCTGAAGAGAGGATCATGCAAACTGTGGAGATCACTAAGCATGCAGTGGACATAGAAGAGAAGGGTGTGAGGCTGCGGCTCACCATTGTGGACACACCAGGTTTTGGGGATGCAGTCAACAACACAGAGTGCTGGAAGCCTGTGGCAGAATACATTGATCAGCAGTTTGAGCAGTATTTCCGAGACGAGAGTGGCCTGAACCGAAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTCGGCCATGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATCGTGCCTATCCTGGCTAAGGCAGACACACTGACACCTCCCGAAGTGGACCACAAGAAACGCAAAATCCGGGAGGAGATTGAGCATTTTGGAATCAAGATCTATCAATTCCCAGACTGTGACTCTGATGAGGATGAGGACTTCAAATTGCAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCAGTAATTGGCAGCAACACTGTAGTAGAGGCCAGAGGGCGGCGAGTTCGGGGTCGACTCTACCCCTGGGGCATCGTGGAAGTGGAAAACCCAGGGCACTGCGACTTTGTGAAGCTGAGGACAATGCTGGTACGTACCCACATGCAGGACCTGAAGGATGTGACACGGGAGACACATTATGAGAACTACCGGGCACAGTGCATCCAGAGCATGACCCGCCTGGTGGTGAAGGAACGGAATCGCAACAAACTGACTCGGGAAAGTGGTACCGACTTCCCCATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTTATCCGAGAGAAAGATGAGGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATACAAAAACAGATGAAGGAGAACTATTAA MSLTARVSCSMLSCFGEEGPPSLEYIQAKDLFPPKELVKEEENLQDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKRKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQKQMKENY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29348 TNS3::INTS1 ENSG00000136205.18::ENSG00000164880.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 587 FALSE NA FALSE NA TNS3 ENSG00000136205.18 protein_coding - - chr7:47275154-47582558:- chr7:47506907:- chr7:47314752-47622156:- chr7:47546505:- INTS1 ENSG00000164880.16 protein_coding - - chr7:1470277-1504389:- chr7:1482707:- chr7:1509913-1544025:- chr7:1522343:- chr7:47493189,chr7:47493191 chr7:1483424,chr7:1483423 NA NA chr7:47532787,chr7:47532789 chr7:1523060,chr7:1523059 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-RING_16|10-20|0.014^C1_1|37-85|5.2e-15^C1_2|37-75|2.8e-06^zf-RING_16|47-77|0.0001^PHD|50-76|8.9e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:45.77Mb] 33 19 33 19 ONLY_REF_SPLICE YES_LDAS 0.6916 GT 1.7968 AG 1.8256 ENST00000434451.1 1-234 ENST00000404767.8 3542-6573 chr7|-|[2]47506907-47506944[1]|[0]47529036-47529147[0]|[2]47557037-47557120[0]<==>chr7|-|[2]1470577-1470692[1]|[0]1470846-1470955[2]|[1]1471133-1471224[0]|[2]1471571-1471641[1]|[0]1472273-1472386[1]|[0]1473072-1473184[2]|[1]1473566-1473693[0]|[2]1474168-1474360[2]|[1]1474705-1474838[0]|[2]1475948-1476071[2]|[1]1476229-1476455[0]|[2]1476570-1476657[2]|[1]1476794-1476918[0]|[2]1477550-1477673[2]|[1]1477753-1477936[1]|[0]1478366-1478506[1]|[0]1478726-1478885[0]|[2]1479430-1479684[0]|[2]1480317-1480441[1]|[0]1480835-1480933[1]|[0]1481342-1481488[1]|[0]1482546-1482707[1] atgtgctccaggcagagatcaggattcggatgcatcaccaactggtggaagatggggactaggcaccctgcacaccctgcacagccggaagaattaacctcgagtctgcacgcttttaagaacaaggcctttaaaaaatccaaagtgtgtggagtttgcaaacaaattattgacggtcaaggtatttcatgccgagcctgcaagtattcctgccacaagaaatgtgaagccaagCCGACGACAGCGAGTTCCAGGCGCTGCTGGACATCTGGTTTCCGGAGGAGAAGCCACTGCCCACCGCCTTCCTGGTGGACACATCGGAGGAGGCGCTGCTGCTTCCTGACTGGCTGAAGCTGCGCATGATCCGTTCTGAGGTGCTCCGCCTGGTGGACGCCGCCCTGCAGGACCTGGAGCCGCAGCAGCTGCTGCTGTTCGTGCAGTCGTTTGGCATCCCCGTGTCCAGCATGAGCAAACTCCTCCAGTTCCTGGACCAGGCAGTGGCCCACGACCCCCAGACTCTGGAGCAGAACATCATGGACAAGAATTACATGGCCCACCTGGTGGAGGTCCAGCATGAGCGCGGCGCCTCCGGAGGCCAGACTTTCCACTCCTTGCTCACAGCCTCCCTGCCGCCCCGCCGAGACAGCACAGAGGCACCCAAACCAAAGAGCAGCCCAGAGCAGCCCATAGGCCAGGGCCGGATTCGGGTGGGGACCCAGCTCCGGGTGCTGGGCCCTGAGGACGACCTGGCTGGCATGTTCCTCCAGATTTTCCCGCTCAGCCCGGACCCTCGGTGGCAGAGCTCCAGTCCCCGCCCCGTGGCCCTCGCCCTGCAGCAGGCCCTGGGCCAGGAGCTGGCCCGCGTCGTCCAGGGCAGCCCCGAGGTGCCGGGCATCACGGTGCGTGTCCTGCAGGCCCTCGCCACCCTGCTCAGCTCCCCACACGGCGGTGCCCTGGTGATGTCCATGCACCGTAGCCACTTCCTGGCCTGCCCGCTGCTGCGCCAGCTCTGCCAGTACCAGCGCTGTGTGCCACAGGACACCGGCTTCTCCTCGCTCTTCCTGAAGGTGCTCCTGCAGATGCTGCAGTGGCTGGACAGCCCTGGCGTGGAGGGCGGGCCCCTGCGGGCACAGCTCAGGATGCTTGCCAGCCAGGCCTCAGCCGGGCGCAGGCTCAGTGATGTGCGAGGGGGGCTCCTGCGCCTGGCCGAGGCCCTGGCCTTCCGTCAGGACCTGGAGGTGGTCAGCTCCACCGTCCGTGCCGTCATCGCCACCCTGAGGTCTGGGGAGCAGTGCAGCGTGGAGCCGGACCTGATCAGCAAAGTCCTCCAGGGGCTGATCGAGGTGAGGTCCCCCCACCTGGAGGAGCTGCTGACTGCATTCTTCTCTGCCACTGCGGATGCTGCCTCCCCGTTTCCAGCCTGTAAGCCCGTTGTGGTGGTGAGCTCCCTGCTGCTGCAGGAGGAGGAGCCCCTGGCTGGGGGGAAGCCGGGTGCGGACGGTGGCAGCCTGGAGGCCGTGCGGCTGGGGCCCTCGTCAGGCCTCCTAGTGGACTGGCTGGAAATGCTGGACCCCGAGGTGGTCAGCAGCTGCCCCGACCTGCAGCTCAGGCTGCTCTTCTCCCGGAGGAAGGGCAAAGGTCAGGCCCAGGTGCCCTCGTTCCGTCCCTACCTCCTGACCCTCTTCACGCATCAGTCCAGCTGGCCCACACTGCACCAGTGCATCCGAGTCCTGCTGGGCAAGAGCCGGGAACAGAGGTTCGACCCCTCTGCCTCTCTGGACTTCCTCTGGGCCTGCATCCATGTTCCTCGCATCTGGCAGGGGCGGGACCAGCGCACCCCGCAGAAGCGGCGGGAGGAGCTGGTGCTGCGGGTCCAGGGCCCGGAGCTCATCAGCCTGGTGGAGCTGATCCTGGCCGAGGCGGAGACGCGGAGCCAGGACGGGGACACAGCCGCCTGCAGCCTCATCCAGGCCCGGCTGCCCCTGCTGCTCAGCTGCTGCTGTGGGGACGATGAGAGTGTCAGGAAGGTGACGGAGCACCTGTCAGGCTGCATCCAGCAGTGGGGAGACAGCGTGCTGGGCAGGCGCTGCCGAGACCTTCTCCTGCAGCTCTACCTACAGCGGCCGGAGCTGCGGGTGCCCGTGCCTGAGGTCCTACTGCACAGCGAAGGGGCTGCCAGCAGCAGCGTCTGCAAGCTGGACGGACTCATCCACCGCTTCATCACGCTCCTTGCGGACACCAGCGACTCCCGGGCGTTGGAGAACCGAGGGGCGGATGCCAGCATGGCCTGCCGGAAGCTGGCGGTGGCGCACCCGCTGCTGCTGCTCAGGCACCTGCCCATGATCGCGGCGCTCCTGCACGGCCGCACCCACCTCAACTTCCAGGAGTTCCGGCAGCAGAACCACCTGAGCTGCTTCCTGCACGTGCTGGGCCTGCTGGAGCTGCTGCAGCCGCACGTGTTCCGCAGCGAGCACCAGGGGGCGCTGTGGGACTGCCTTCTGTCCTTCATCCGCCTGCTGCTGAATTACAGGAAGTCCTCCCGCCATCTGGCTGCCTTCATCAACAAGTTTGTGCAGTTCATCCATAAGTACATTACCTACAATGCCCCAGCAGCCATCTCCTTCCTGCAGAAGCACGCCGACCCGCTCCACGACCTGTCCTTCGACAACAGTGACCTGGTGATGCTGAAATCCCTCCTTGCAGGGCTCAGCCTGCCCAGCAGGGACGACAGGACCGACCGAGGCCTGGACGAAGAGGGCGAGGAGGAGAGCTCAGCCGGCTCCTTGCCCCTGGTCAGCGTCTCCCTGTTCACCCCTCTGACCGCGGCCGAGATGGCCCCCTACATGAAACGGCTTTCCCGGGGCCAAACGGTGGAGGATCTGCTGGAGGTTCTGAGTGACATAGACGAGATGTCCCGGCGGAGACCCGAGATCCTGAGCTTCTTCTCGACCAACCTGCAGCGGCTGATGAGCTCGGCCGAGGAGTGTTGCCGCAACCTCGCCTTCAGCCTGGCCCTGCGCTCCATGCAGAACAGCCCCAGCATTGCAGCCGCTTTCCTGCCCACGTTCATGTACTGCCTGGGCAGCCAGGACTTTGAGGTGGTGCAGACGGCCCTCCGGAACCTGCCTGAGTACGCTCTCCTGTGCCAAGAGCACGCGGCTGTGCTGCTCCACCGGGCCTTCCTGGTGGGCATGTACGGCCAGATGGACCCCAGCGCGCAGATCTCCGAGGCCCTGAGGATCCTGCATATGGAGGCCGTGATGTGA MCSRQRSGFGCITNWWKMGTRHPAHPAQPEELTSSLHAFKNKAFKKSKVCGVCKQIIDGQGISCRACKYSCHKKCEAKPTTASSRRCWTSGFRRRSHCPPPSWWTHRRRRCCFLTG*SCA*SVLRCSAWWTPPCRTWSRSSCCCSCSRLASPCPA*ANSSSSWTRQWPTTPRLWSRTSWTRITWPTWWRSSMSAAPPEARLSTPCSQPPCRPAETAQRHPNQRAAQSSP*ARAGFGWGPSSGCWALRTTWLACSSRFSRSARTLGGRAPVPAPWPSPCSRPWARSWPASSRAAPRCRASRCVSCRPSPPCSAPHTAVPW*CPCTVATSWPARCCASSASTSAVCHRTPASPRSS*RCSCRCCSGWTALAWRAGPCGHSSGCLPARPQPGAGSVMCEGGSCAWPRPWPSVRTWRWSAPPSVPSSPP*GLGSSAAWSRT*SAKSSRG*SR*GPPTWRSC*LHSSLPLRMLPPRFQPVSPLWW*APCCCRRRSPWLGGSRVRTVAAWRPCGWGPRQAS*WTGWKCWTPRWSAAAPTCSSGCSSPGGRAKVRPRCPRSVPTS*PSSRISPAGPHCTSASESCWARAGNRGSTPLPLWTSSGPASMFLASGRGGTSAPRRSGGRSWCCGSRARSSSAWWS*SWPRRRRGARTGTQPPAASSRPGCPCCSAAAVGTMRVSGR*RSTCQAASSSGETACWAGAAETFSCSSTYSGRSCGCPCLRSYCTAKGLPAAASASWTDSSTASSRSLRTPATPGRWRTEGRMPAWPAGSWRWRTRCCCSGTCP*SRRSCTAAPTSTSRSSGSRTT*AASCTCWACWSCCSRTCSAASTRGRCGTAFCPSSACC*ITGSPPAIWLPSSTSLCSSSISTLPTMPQQPSPSCRSTPTRSTTCPSTTVTW*C*NPSLQGSACPAGTTGPTEAWTKRARRRAQPAPCPWSASPCSPL*PRPRWPPT*NGFPGAKRWRICWRF*VT*TRCPGGDPRS*ASSRPTCSG**ARPRSVAATSPSAWPCAPCRTAPALQPLSCPRSCTAWAARTLRWCRRPSGTCLSTLSCAKSTRLCCSTGPSWWACTARWTPARRSPRP*GSCIWRP*C FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29349 SS18L1::MYH15 ENSG00000184402.15::ENSG00000144821.11 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 586 FALSE NA FALSE NA SS18L1 ENSG00000184402.15 protein_coding + + chr20:62143769-62182514:+ chr20:62143889:+ chr20:60718825-60757570:+ chr20:60718945:+ MYH15 ENSG00000144821.11 protein_coding - - chr3:108380368-108529322:- chr3:108476515:- chr3:108099215-108248169:- chr3:108195362:- chr20:62150676 chr3:108480117 NA NA chr20:60725732 chr3:108198964 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SSXT-PARTIAL|13-69~|6.6e-37^Elf4|20-39|0.00075^Elf4-PARTIAL|48-69~|0.011 Myosin_head-PARTIAL|~1115-1313|1.7^Myosin_tail_1-PARTIAL|~1115-1915|2.5e-114^AAA_13-PARTIAL|~1115-1169|3.4e-07^AAA_13|1194-1356|0.25^AAA_13|1292-1646|4^AAA_13|1602-1791|0.023^Myosin_head|1721-1786|1.9^AAA_13|1781-1918|0.023 ["SS18L1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr3] 33 22 33 22 ONLY_REF_SPLICE YES_LDAS 0.7315 GT 1.6895 AG 1.9656 ENST00000331758.8 1-69 ENST00000273353.5 1115-5781 chr20|+|[0]62143821-62143889[2]<==>chr3|-|[2]108381545-108381559[0]|[2]108383595-108383729[0]|[2]108384687-108384782[0]|[2]108388970-108389074[0]|[2]108391760-108391930[0]|[2]108394031-108394156[0]|[2]108398637-108398840[0]|[2]108399075-108399267[2]|[1]108405338-108405453[0]|[2]108408280-108408404[1]|[0]108410583-108410932[2]|[1]108414232-108414428[0]|[2]108416812-108416930[1]|[0]108421088-108421214[0]|[2]108428492-108428881[0]|[2]108430832-108430922[2]|[1]108437554-108437699[0]|[2]108439737-108439913[0]|[2]108441018-108441260[0]|[2]108444640-108444895[2]|[1]108454006-108454142[0]|[2]108455736-108455859[2]|[1]108456766-108456883[1]|[0]108459362-108459449[0]|[2]108460300-108460367[1]|[0]108463111-108463243[0]|[2]108464638-108464814[0]|[2]108470042-108470212[0]|[2]108470698-108470847[0]|[2]108476397-108476515[1] atgtccgtggccttcgcgtctgcccggccaagaggcaaaggggaggttacgcagcaaaccatccagaagATGCTGACAAAGCTGCTTTCCTCATGGGCATTAACTCCTCTGAGTTGGTAAAGTGCTTGATCCATCCTAGAATCAAAGTTGGTAACGAATATGTTACCAGAGGTCAAACTATAGAACAGGTAACCTGTGCTGTCGGTGCCCTGTCCAAGTCAATGTATGAAAGGATGTTTAAGTGGCTAGTGGCACGGATCAACAGGGCCCTGGATGCCAAGCTGTCAAGGCAGTTCTTCATTGGCATTCTTGACATCACTGGTTTTGAAATCCTTGAGTATAATAGCCTTGAGCAACTTTGCATTAATTTTACCAATGAAAAATTACAACAATTCTTCAATTGGCACATGTTTGTTCTGGAGCAAGAGGAATATAAGAAAGAAAGCATTGAATGGGTGTCTATTGGCTTTGGTCTGGATTTGCAAGCTTGCATAGATCTCATTGAGAAGCCAATGGGCATCCTTTCCATCCTTGAAGAAGAGTGTATGTTTCCTAAGGCTACAGACCTGACTTTCAAGACCAAACTCTTTGACAACCATTTTGGAAAGTCGGTTCATCTCCAGAAGCCCAAGCCTGATAAGAAGAAATTTGAAGCTCATTTTGAACTTGTCCATTATGCAGGAGTGGTACCTTATAATATCAGTGGTTGGCTGGAAAAGAACAAAGACCTCCTTAATGAAACAGTGGTAGCTGTATTTCAGAAGTCTTCCAACAGACTCCTGGCGAGCCTTTTTGAAAATTACATGAGTACTGACAGTGCTATACCATTTGGGGAGAAGAAACGAAAGAAAGGAGCTTCATTCCAAACGGTTGCATCTCTGCATAAAGAAAACCTGAATAAATTGATGACTAATCTGAAATCAACAGCACCTCATTTTGTGAGATGCATAAATCCCAATGTGAACAAAATACCAGGTATACTGGACCCTTACTTGGTTCTACAGCAGTTGCGCTGTAATGGTGTCTTGGAAGGGACTAGGATATGCCGTGAAGGTTTTCCAAACCGACTGCAGTATGCTGATTTTAAACAAAGGTACTGCATTCTGAATCCAAGGACCTTTCCAAAGAGCAAGTTTGTGAGCAGCAGAAAAGCAGCTGAAGAATTACTTGGCTCCTTGGAGATAGACCATACCCAGTACCGATTTGGAATCACTAAGGTGTTTTTTAAAGCTGGGTTTCTGGGCCAACTGGAAGCAATAAGAGATGAGAGACTATCTAAAGTCTTCACATTGTTCCAAGCCAGAGCACAGGGCAAACTGATGCGAATCAAATTCCAGAAGATTCTGGAAGAAAGGGATGCACTTATTTTGATCCAATGGAACATAAGAGCTTTCATGGCTGTGAAGAACTGGCCCTGGATGAGGCTCTTCTTCAAGATCAAGCCTCTTGTTAAATCTTCAGAAGTAGGAGAAGAAGTAGCTGGACTGAAGGAAGAGTGTGCACAATTACAGAAAGCCTTGGAGAAATCAGAGTTTCAGAGGGAGGAACTGAAAGCAAAGCAAGTATCCCTCACTCAGGAAAAAAATGACCTGATTCTTCAGCTTCAGGCTGAGCAAGAGACACTGGCAAATGTTGAAGAGCAGTGCGAGTGGCTGATTAAATCCAAGATCCAGCTGGAGGCCAGAGTAAAGGAGCTGTCGGAGAGGGTGGAGGAAGAAGAGGAGATAAATTCTGAGCTGACTGCCAGGGGGCGGAAACTCGAAGATGAATGTTTTGAGTTGAAGAAAGAAATCGATGACCTGGAAACAATGTTGGTGAAGTCAGAGAAGGAGAAGCGTACTACAGAGCACAAGGTCAAGAACTTGACTGAGGAAGTAGAGTTTCTAAATGAGGATATCAGCAAACTTAACAGAGCAGCCAAGGTTGTGCAGGAGGCCCATCAGCAGACCCTGGATGACCTGCACATGGAGGAGGAGAAGCTCAGCAGCCTGAGCAAAGCAAATCTGAAGCTGGAACAGCAAGTTGATGAGCTTGAGGGTGCCCTTGAGCAGGAGAGAAAAGCGAGAATGAACTGTGAAAGGGAACTGCACAAACTGGAGGGCAATTTAAAGCTGAATCGGGAAAGTATGGAGAACCTGGAAAGCAGCCAGCGACACCTGGCAGAAGAGCTGAGGAAAAAAGAATTAGAATTGAGTCAGATGAATTCAAAAGTGGAGAATGAGAAAGGCCTGGTAGCTCAGCTTCAGAAGACGGTTAAAGAGCTTCAGACTCAAATAAAGGATTTGAAAGAGAAACTAGAAGCTGAAAGGACCACTCGAGCCAAGATGGAAAGGGAGAGAGCTGACCTCACCCAAGACCTGGCTGACTTGAATGAGAGGCTGGAGGAGGTAGGAGGATCCAGTTTGGCTCAGCTGGAAATAACTAAGAAACAGGAAACCAAATTCCAGAAGCTGCACCGAGACATGGAAGAGGCCACTCTGCACTTTGAGACAACTTCTGCATCTTTGAAGAAGAGACATGCAGACAGCCTGGCTGAGCTCGAGGGCCAGGTAGAAAATCTACAGCAGGTCAAGCAGAAACTGGAAAAAGACAAGAGTGACTTGCAGCTAGAAGTAGATGACCTCCTGACCCGTGTTGAGCAGATGACAAGAGCTAAGGCAAATGCTGAGAAACTCTGTACTCTATATGAAGAGCGCTTGCATGAAGCAACTGCAAAGCTAGATAAGGTGACTCAGTTGGCAAATGACCTGGCAGCACAAAAGACAAAGCTGTGGAGTGAGAGTGGCGAGTTCCTACGGAGGCTTGAAGAGAAGGAGGCTCTGATAAACCAACTTTCCAGGGAAAAGAGCAACTTCACTCGGCAGATTGAAGACCTGAGAGGGCAGCTGGAAAAGGAGACCAAATCCCAGAGTGCCCTGGCCCATGCCCTGCAGAAGGCTCAGCGTGACTGTGACCTTCTACGAGAGCAGTATGAGGAAGAACAAGAGGTCAAGGCTGAGCTGCACCGGACCTTATCCAAAGTCAATGCTGAAATGGTGCAATGGAGAATGAAGTATGAAAACAATGTCATCCAGAGAACAGAAGACTTGGAGGATGCCAAGAAGGAACTGGCAATTAGATTGCAGGAGGCAGCCGAAGCCATGGGGGTGGCCAATGCCAGAAATGCCTCCTTGGAGAGAGCCAGGCACCAGCTGCAGCTGGAGCTCGGGGACGCCCTGTCTGACCTCGGGAAGGTCCGCTCTGCAGCAGCCAGGCTGGACCAGAAGCAGCTGCAGTCTGGCAAGGCCCTTGCCGACTGGAAGCAGAAGCACGAGGAGTCCCAGGCGTTGCTGGATGCCTCTCAGAAGGAAGTTCAGGCTCTCAGTACAGAGCTCCTCAAGCTCAAGAACACCTATGAGGAGAGCATCGTGGGCCAGGAGACACTCAGGAGGGAGAACAAGAACCTCCAAGAAGAGATTTCTAATCTGACAAACCAGGTTAGAGAAGGGACCAAGAACTTAACTGAAATGGAAAAGGTCAAGAAACTAATTGAAGAAGAGAAGACAGAAGTCCAGGTGACACTGGAAGAAACAGAGGGAGCCCTGGAACGTAATGAAAGCAAGATTCTTCATTTCCAGCTTGAACTCTTGGAAGCTAAAGCAGAACTTGAAAGAAAGCTTTCAGAGAAAGATGAAGAAATAGAAAATTTTAGGAGGAAGCAGCAGTGTACCATTGACTCCCTGCAGTCTAGTCTGGATTCTGAAGCTAAGAGCAGAATTGAGGTTACCCGGCTGAAGAAGAAGATGGAAGAGGACCTCAATGAGATGGAACTCCAGCTTAGCTGTGCCAACCGGCAGGTGTCAGAAGCAACCAAATCCCTGGGCCAGCTTCAGATTCAAATCAAGGACCTTCAAATGCAGCTGGATGACAGCACACAACTGAACAGTGATCTGAAGGAGCAGGTGGCTGTGGCTGAGCGGCGCAACTCTCTTCTTCAGTCTGAACTAGAGGATCTAAGGTCCCTGCAAGAGCAGACAGAGCGTGGCCGCAGGCTGTCAGAAGAAGAGCTCCTGGAAGCAACAGAAAGAATCAATCTTTTCTATACCCAGAACACAAGCCTCCTCAGCCAGAAGAAGAAACTGGAGGCTGATGTTGCCCGGATGCAGAAAGAAGCTGAAGAGGTGGTGCAGGAGTGTCAAAATGCAGAAGAGAAGGCCAAGAAGGCAGCCATTGAGGCAGCAAACTTGTCAGAAGAACTGAAGAAGAAGCAAGACACCATTGCCCACTTGGAAAGGACAAGAGAAAATATGGAGCAGACAATTACAGACTTACAGAAAAGGCTGGCTGAAGCTGAACAGATGGCCCTGATGGGGAGTAGAAAGCAAATCCAGAAACTAGAATCCAGGGTTCGTGAACTGGAAGGTGAACTGGAGGGTGAAATCCGTCGCAGTGCAGAGGCCCAGAGGGGAGCCCGCAGACTTGAGCGATGCATCAAAGAGCTGACCTATCAGGCAGAGGAAGACAAGAAGAATCTGAGCAGGATGCAAACTCAGATGGATAAACTTCAGCTAAAAGTGCAAAATTACAAGCAGCAAGTCGAGGTGGCGGAAACACAAGCCAATCAATACCTTTCCAAGTATAAGAAACAGCAACATGAGTTGAATGAAGTGAAGGAAAGGGCAGAGGTGGCAGAATCTCAAGTCAATAAACTCAAAATTAAAGCAAGAGAGTTTGGGAAAAAGGTTCAAGAAGAATAG MSVAFASARPRGKGEVTQQTIQKMLTKLLSSWALTPLSW*SA*SILESKLVTNMLPEVKL*NR*PVLSVPCPSQCMKGCLSG*WHGSTGPWMPSCQGSSSLAFLTSLVLKSLSIIALSNFALILPMKNYNNSSIGTCLFWSKRNIRKKALNGCLLALVWICKLA*ISLRSQWASFPSLKKSVCFLRLQT*LSRPNSLTTILESRFISRSPSLIRRNLKLILNLSIMQEWYLIISVVGWKRTKTSLMKQW*LYFRSLPTDSWRAFLKIT*VLTVLYHLGRRNERKELHSKRLHLCIKKT*IN**LI*NQQHLIL*DA*IPM*TKYQVYWTLTWFYSSCAVMVSWKGLGYAVKVFQTDCSMLILNKGTAF*IQGPFQRASL*AAEKQLKNYLAPWR*TIPSTDLESLRCFLKLGFWANWKQ*EMRDYLKSSHCSKPEHRAN*CESNSRRFWKKGMHLF*SNGT*ELSWL*RTGPG*GSSSRSSLLLNLQK*EKK*LD*RKSVHNYRKPWRNQSFRGRN*KQSKYPSLRKKMT*FFSFRLSKRHWQMLKSSASG*LNPRSSWRPE*RSCRRGWRKKRR*ILS*LPGGGNSKMNVLS*RKKSMTWKQCW*SQRRRSVLQSTRSRT*LRK*SF*MRISANLTEQPRLCRRPISRPWMTCTWRRRSSAA*AKQI*SWNSKLMSLRVPLSRREKRE*TVKGNCTNWRAI*S*IGKVWRTWKAASDTWQKS*GKKN*N*VR*IQKWRMRKAW*LSFRRRLKSFRLK*RI*KRN*KLKGPLEPRWKGRELTSPKTWLT*MRGWRR*EDPVWLSWK*LRNRKPNSRSCTETWKRPLCTLRQLLHL*RRDMQTAWLSSRAR*KIYSRSSRNWKKTRVTCS*K*MTS*PVLSR*QELRQMLRNSVLYMKSACMKQLQS*IR*LSWQMTWQHKRQSCGVRVASSYGGLKRRRL**TNFPGKRATSLGRLKT*EGSWKRRPNPRVPWPMPCRRLSVTVTFYESSMRKNKRSRLSCTGPYPKSMLKWCNGE*SMKTMSSREQKTWRMPRRNWQLDCRRQPKPWGWPMPEMPPWREPGTSCSWSSGTPCLTSGRSALQQPGWTRSSCSLARPLPTGSRSTRSPRRCWMPLRRKFRLSVQSSSSSRTPMRRASWARRHSGGRTRTSKKRFLI*QTRLEKGPRT*LKWKRSRN*LKKRRQKSR*HWKKQREPWNVMKARFFISSLNSWKLKQNLKESFQRKMKK*KILGGSSSVPLTPCSLVWILKLRAELRLPG*RRRWKRTSMRWNSSLAVPTGRCQKQPNPWASFRFKSRTFKCSWMTAHN*TVI*RSRWLWLSGATLFFSLN*RI*GPCKSRQSVAAGCQKKSSWKQQKESIFSIPRTQASSARRRNWRLMLPGCRKKLKRWCRSVKMQKRRPRRQPLRQQTCQKN*RRSKTPLPTWKGQEKIWSRQLQTYRKGWLKLNRWP*WGVESKSRN*NPGFVNWKVNWRVKSVAVQRPRGEPADLSDASKS*PIRQRKTRRI*AGCKLRWINFS*KCKITSSKSRWRKHKPINTFPSIRNSNMS*MK*RKGQRWQNLKSINSKLKQESLGKRFKKN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE synovial sarcoma translocation gene on chromosome 18-like 1 1 synovial sarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29350 CUX1::GINS3 ENSG00000257923.12::ENSG00000181938.14 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102028145:+ chr7:101459184-101927250:+ chr7:101671425:+ GINS3 ENSG00000181938.14 protein_coding + + chr16:58295080-58406147:+ chr16:58386621:+ chr16:58328984-58440051:+ chr16:58420525:+ chr7:102044503,chr7:102044503 chr16:58353410,chr16:58353407 NA NA chr7:101687783,chr7:101687783 chr16:58387314,chr16:58387311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CUX1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr16] 27 18 27 17.87 ONLY_REF_SPLICE YES_LDAS 0.5968 GT 1.9086 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 29351 SH3PXD2A::STN1 ENSG00000107957.17::ENSG00000107960.12 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 590 FALSE NA FALSE NA SH3PXD2A ENSG00000107957.17 protein_coding - - chr10:103594027-103855584:- chr10:103855195:- chr10:105353784-105615342:- chr10:105614953:- STN1 ENSG00000107960.12 protein_coding - - chr10:103856806-103918332:- chr10:103910622:- chr10:105616564-105678090:- chr10:105670380:- chr10:103822518,chr10:103822526 chr10:103914086,chr10:103914089 NA NA chr10:105582276,chr10:105582284 chr10:105673844,chr10:105673847 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PX-PARTIAL|31-72~|4.1e-17 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 23 3 23 3 ONLY_REF_SPLICE YES_LDAS 0.3458 GT 1.6402 AG 1.6729 ENST00000355946.7 1-72 ENST00000698302.1 313-342 chr10|-|[2]103855195-103855266[0]<==>chr10|-|[2]103910593-103910622[0] atgctcgcctactgcgtgcaggatgccaccgtggtggacgtggagaagcggaggaacccctccaagcactacGTGTATTTTTGTACAATGGACATCCAATAA MLAYCVQDATVVDVEKRRNPSKHYVYFCTMDIQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29354 MTMR4::SEPTIN4 ENSG00000108389.10::ENSG00000108387.16 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 585 TRUE 1066 TRUE 394 MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58512852:- chr17:56566890-56595266:- chr17:56590213:- SEPTIN4 ENSG00000108387.16 protein_coding - - chr17:58520250-58544368:- chr17:58526978:- chr17:56597611-56621729:- chr17:56604339:- chr17:58512800 chr17:58535241 NA NA chr17:56590161 chr17:56612602 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none nSTAND1|93-153|4.4e-05^Septin|122-398|4.6e-136^VapE-like_dom|124-161|1.3e-05^RsgA_GTPase|126-194|1.6e-07^AIG1|127-201|1.7e-05^ABC_tran|127-146|9e-05^AAA_29|127-144|0.0002^MMR_HSR1|128-261|5.2e-09^GTP_EFTU|128-200|0.0002^AAA_16|128-146|7.9e-05^AAA_22|128-149|0.00021^Ras|128-192|0.00011^Dynamin_N|129-148|0.011^Dynamin_N|182-211|0.00094^RsgA_GTPase|256-302|0.0066^GTP_EFTU|256-296|0.0099^AAA_22|350-399|2.1^GTP_EFTU|354-366|0.32^AIG1|368-407|1.2^ABC_tran|387-408|3.6^Dynamin_N|432-454|7.3 none 18 23 18 11.27 ONLY_REF_SPLICE YES_LDAS 0.3893 GT 1.8892 AG 1.9656 ENST00000682306.1 1-135 ENST00000317256.10 4-1380 chr17|-|[2]58512852-58512941[0]|[2]58514363-58514407[0]<==>chr17|-|[2]58520426-58520485[0]|[2]58520743-58520842[2]|[1]58520998-58521160[1]|[0]58521254-58521350[0]|[2]58521545-58521646[0]|[2]58521736-58521853[2]|[1]58521967-58522101[2]|[1]58525078-58525201[1]|[0]58525695-58525781[1]|[0]58526220-58526313[0]|[2]58526682-58526978[0] atgagcctgaccgcccgcgtctcctgctccatgcttagctgcttcggtgaggaggggccccccagcctggagtacatccaagccaaggatctgttcccccccaaggaactagtgaaggaggaagagaatcttcagATCAAGCGTTTCCTGGAGGACACCACGGATGATGGAGAACTGAGCAAGTTCGTGAAGGATTTCTCAGGAAATGCGAGCTGCCACCCACCAGAGGCTAAGACCTGGGCATCCAGGCCCCAAGTCCCGGAGCCAAGGCCCCAGGCCCCGGACCTCTATGATGATGACCTGGAGTTCAGACCCCCCTCGCGGCCCCAGTCCTCTGACAACCAGCAGTACTTCTGTGCCCCAGCCCCTCTCAGCCCATCTGCCAGGCCCCGCAGCCCATGGGGCAAGCTTGATCCCTATGATTCCTCTGAGGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACCGAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGAGTCTGGCCTGGGCAAATCCACACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGACCGGAAACTTCTTGGTGCTGAAGAGAGGATCATGCAAACTGTGGAGATCACTAAGCATGCAGTGGACATAGAAGAGAAGGGTGTGAGGCTGCGGCTCACCATTGTGGACACACCAGGTTTTGGGGATGCAGTCAACAACACAGAGTGCTGGAAGCCTGTGGCAGAATACATTGATCAGCAGTTTGAGCAGTATTTCCGAGACGAGAGTGGCCTGAACCGAAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTCGGCCATGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATCGTGCCTATCCTGGCTAAGGCAGACACACTGACACCTCCCGAAGTGGACCACAAGAAACGCAAAATCCGGGAGGAGATTGAGCATTTTGGAATCAAGATCTATCAATTCCCAGACTGTGACTCTGATGAGGATGAGGACTTCAAATTGCAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCAGTAATTGGCAGCAACACTGTAGTAGAGGCCAGAGGGCGGCGAGTTCGGGGTCGACTCTACCCCTGGGGCATCGTGGAAGTGGAAAACCCAGGGCACTGCGACTTTGTGAAGCTGAGGACAATGCTGGTACGTACCCACATGCAGGACCTGAAGGATGTGACACGGGAGACACATTATGAGAACTACCGGGCACAGTGCATCCAGAGCATGACCCGCCTGGTGGTGAAGGAACGGAATCGCAACAAACTGACTCGGGAAAGTGGTACCGACTTCCCCATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTTATCCGAGAGAAAGATGAGGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATACAAAAACAGATGAAGGAGAACTATTAA MSLTARVSCSMLSCFGEEGPPSLEYIQAKDLFPPKELVKEEENLQIKRFLEDTTDDGELSKFVKDFSGNASCHPPEAKTWASRPQVPEPRPQAPDLYDDDLEFRPPSRPQSSDNQQYFCAPAPLSPSARPRSPWGKLDPYDSSEDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKRKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQKQMKENY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29364 SRC::RPN2 ENSG00000197122.13::ENSG00000118705.18 KYSE520 SRR8615481 SRR8652093 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 593 FALSE NA FALSE NA SRC ENSG00000197122.13 protein_coding + + chr20:37344685-37406050:+ chr20:37396311:+ chr20:35973088-36034453:+ chr20:36024714:+ RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37213760:+ chr20:35806813-35870022:+ chr20:35842163:+ chr20:37397880,chr20:37397877 chr20:37212761,chr20:37212755 NA NA chr20:36026283,chr20:36026280 chr20:35841164,chr20:35841158 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SH3_2|89-159|3.6e-10^SH3_1|90-116|2.8e-10^SH3_9|91-158|5.5e-11^SH3_1|135-154|1.4e-06^SH3_1|165-175|0.89^SH2|168-250|3e-31^PK_Tyr_Ser-Thr|288-535|1.3e-98^Pkinase|289-532|1.2e-49^ABC1|297-320|0.97^ABC1|331-434|5.3e-06^Haspin_kinase|389-433|8.5e-06 none ["SRC:OncomapV4_panel","SRC:Oncogene","SRC:FoundationOne_panel","SRC:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.10Mb] 3 5 3 5 ONLY_REF_SPLICE YES_LDAS 0.1064 GT 1.8892 AG 1.7465 ENST00000358208.9 1-754 ENST00000705448.1 987-1965 chr20|+|[0]37384154-37384403[0]|[1]37386075-37386174[1]|[2]37386460-37386477[1]|[2]37392983-37393015[1]|[2]37393895-37393993[1]|[2]37394174-37394277[0]|[1]37396162-37396311[0]<==>chr20|+|[2]37213760-37213865[2]|[0]37223878-37223969[1]|[2]37225688-37225802[2]|[0]37228550-37228744[2]|[0]37229973-37230059[2]|[0]37232296-37232391[2]|[0]37234020-37234095[0]|[1]37236580-37236709[1]|[2]37238402-37238449[1]|[2]37241308-37241341[2] atgggtagcaacaagagcaagcccaaggatgccagccagcggcgccgcagcctggagcccgccgagaacgtgcacggcgctggcgggggcgctttccccgcctcgcagacccccagcaagccagcctcggccgacggccaccgcggccccagcgcggccttcgcccccgcggccgccgagcccaagctgttcggaggcttcaactcctcggacaccgtcacctccccgcagagggcgggcccgctggccggtggagtgaccacctttgtggccctctatgactatgagtctaggacggagacagacctgtccttcaagaaaggcgagcggctccagattgtcaacaacacgaggaaggtggatgtcagccagacctggttcacattcagatggctgcaaagagagggagactggtggctggcccactcgctcagcacaggacagacaggctacatccccagcaactacgtggcgccctccgactccatccaggctgaggagtggtattttggcaagatcaccagacgggagtcagagcggttactgctcaatgcagagaacccgagagggaccttcctcgtgcgagaaagtgagaccacgaaaggtgcctactgcctctcagtgtctgacttcgacaacgccaagggcctcaacgtgaagcactacaagatccgcaagctggacagcggcggcttctacatcacctcccgcacccagttcaacagcctgcagcagctggtggcctactactccaGGATGTTTTTGAACTAAATTTCATGAACGTCAAATTTTCCAGTGGTTATTATGACTTCCTTGTCGAAGTTGAAGGTGACAACCGGTATATTGCAAATACCGTAGAGCTCAGAGTCAAGATCTCCACTGAAGTTGGCATCACAAATGTTGATCTTTCCACCGTGGATAAGGATCAGAGCATTGCACCCAAAACTACCCGGGTGACATACCCAGCCAAAGCCAAGGGCACATTCATCGCAGACAGCCACCAGAACTTCGCCTTGTTCTTCCAGCTGGTAGATGTGAACACTGGTGCTGAACTCACTCCTCACCAGACATTTGTCCGACTCCATAACCAGAAGACTGGCCAGGAAGTGGTGTTTGTTGCCGAGCCAGACAACAAGAACGTGTACAAGTTTGAACTGGATACCTCTGAAAGAAAGATTGAATTTGACTCTGCCTCTGGCACCTACACTCTCTACTTAATCATTGGAGATGCCACTTTGAAGAACCCAATCCTCTGGAATGTGGCTGATGTGGTCATCAAGTTCCCTGAGGAAGAAGCTCCCTCGACTGTCTTGTCCCAGAACCTTTTCACTCCAAAACAGGAAATTCAGCACCTGTTCCGCGAGCCTGAGAAGAGGCCCCCCACCGTGGTGTCCAATACATTCACTGCCCTGATCCTCTCGCCGTTGCTTCTGCTCTTCGCTCTGTGGATCCGGATTGGTGCCAATGTCTCCAACTTCACTTTTGCTCCTAGCACGATTATATTTCACCTGGGACATGCTGCTATGCTGGGACTCATGTATGTCTACTGGACTCAGCTCAACATGTTCCAGACCTTGAAGTACCTGGCCATCCTGGGCAGTGTGACGTTTCTGGCTGGCAATCGGATGCTGGCCCAGCAGGCAGTCAAGAGGATCGCTGCAGAGCAGAGCAGTAGATTGGCAAAATATAGGACACTACGCACATTAGTTCCAGAAGAAAGATGGAAATTCTGA MGSNKSKPKDASQRRRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTRKVDVSQTWFTFRWLQREGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSRMFLN*IS*TSNFPVVIMTSLSKLKVTTGILQIP*SSESRSPLKLASQMLIFPPWIRIRALHPKLPG*HTQPKPRAHSSQTATRTSPCSSSW*M*TLVLNSLLTRHLSDSITRRLARKWCLLPSQTTRTCTSLNWIPLKERLNLTLPLAPTLST*SLEMPL*RTQSSGMWLMWSSSSLRKKLPRLSCPRTFSLQNRKFSTCSASLRRGPPPWCPIHSLP*SSRRCFCSSLCGSGLVPMSPTSLLLLARLYFTWDMLLCWDSCMSTGLSSTCSRP*STWPSWAV*RFWLAIGCWPSRQSRGSLQSRAVDWQNIGHYAH*FQKKDGNS FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Proto-oncogene tyrosine-protein kinase Src TK Src P12931 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SRC proto-oncogene, non-receptor tyrosine kinase 1 Yes colorectal cancer, endometrial carcinoma epithelial oncogene missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 29367 PAPOLA::ENSG00000289228 ENSG00000090060.19::ENSG00000289228.2 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ ENSG00000289228 ENSG00000289228.2 lncRNA - - chr10:91306958-91575243:- chr10:91350879:- chr10:93066715-93335000:- chr10:93110636:- chr14:96503420,chr14:96503421 chr10:91487053,chr10:91487052 NA NA chr14:96969757,chr14:96969758 chr10:93246810,chr10:93246809 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 106 26 106 26 ONLY_REF_SPLICE YES_LDAS 1.6791 GT 1.9219 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29371 KDM2A::GRK2 ENSG00000173120.15::ENSG00000173020.11 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 595 FALSE NA FALSE NA KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67121358:+ chr11:66886734-67025553:+ chr11:66888829:+ GRK2 ENSG00000173020.11 protein_coding + + chr11:67266473-67286556:+ chr11:67282435:+ chr11:67033944-67054027:+ chr11:67049906:+ chr11:67157214,chr11:67157215 chr11:67282282,chr11:67282280 NA NA chr11:66924685,chr11:66924686 chr11:67049753,chr11:67049751 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["CCLE_StarF2019"] 39 5 39 5 ONLY_REF_SPLICE YES_LDAS 0.5597 GT 1.9656 AG 1.7819 ENST00000529006.7 1-42 ENST00000308595.10 1053-2070 chr11|+|[0]67121317-67121358[2]<==>chr11|+|[2]67282435-67282542[1]|[2]67282752-67282818[2]|[0]67283128-67283228[1]|[2]67283707-67283773[2]|[0]67283854-67283949[2]|[0]67284211-67284373[0]|[1]67284847-67284983[2]|[0]67285075-67285188[2]|[0]67285286-67285450[2] atggaacccgaagaagaaaggattcgttacagccagagattgGGGCACCCACGGGTACATGGCTCCGGAGGTCCTGCAGAAGGGCGTGGCCTACGACAGCAGTGCCGACTGGTTCTCTCTGGGGTGCATGCTCTTCAAGTTGCTGCGGGGGCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATCGACCGCATGACGCTGACGATGGCCGTGGAGCTGCCCGACTCCTTCTCCCCTGAACTACGCTCCCTGCTGGAGGGGTTGCTGCAGAGGGATGTCAACCGGAGATTGGGCTGCCTGGGCCGAGGGGCTCAGGAGGTGAAAGAGAGCCCCTTTTTCCGCTCCCTGGACTGGCAGATGGTCTTCTTGCAGAAGTACCCTCCCCCGCTGATCCCCCCACGAGGGGAGGTGAACGCGGCCGACGCCTTCGACATTGGCTCCTTCGATGAGGAGGACACAAAAGGAATCAAGTTACTGGACAGTGATCAGGAGCTCTACCGCAACTTCCCCCTCACCATCTCGGAGCGGTGGCAGCAGGAGGTGGCAGAGACTGTCTTCGACACCATCAACGCTGAGACAGACCGGCTGGAGGCTCGCAAGAAAGCCAAGAACAAGCAGCTGGGCCATGAGGAAGACTACGCCCTGGGCAAGGACTGCATCATGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGGTACTTCTACCTGTTCCCCAACCGCCTCGAGTGGCGGGGCGAGGGCGAGGCCCCGCAGAGCCTGCTGACCATGGAGGAGATCCAGTCGGTGGAGGAGACGCAGATCAAGGAGCGCAAGTGCCTGCTCCTCAAGATCCGCGGTGGGAAACAGTTCATTTTGCAGTGCGATAGCGACCCTGAGCTGGTGCAGTGGAAGAAGGAGCTGCGCGACGCCTACCGCGAGGCCCAGCAGCTGGTGCAGCGGGTGCCCAAGATGAAGAACAAGCCGCGCTCGCCCGTGGTGGAGCTGAGCAAGGTGCCGCTGGTCCAGCGCGGCAGTGCCAACGGCCTCTGA MEPEEERIRYSQRLGHPRVHGSGGPAEGRGLRQQCRLVLSGVHALQVAAGAQPLPAAQDQRQA*DRPHDADDGRGAARLLLP*TTLPAGGVAAEGCQPEIGLPGPRGSGGEREPLFPLPGLADGLLAEVPSPADPPTRGGERGRRLRHWLLR*GGHKRNQVTGQ*SGALPQLPPHHLGAVAAGGGRDCLRHHQR*DRPAGGSQESQEQAAGP*GRLRPGQGLHHAWLHVQDGQPLPDPVAAAVLLPVPQPPRVAGRGRGPAEPADHGGDPVGGGDADQGAQVPAPQDPRWETVHFAVR*RP*AGAVEEGAARRLPRGPAAGAAGAQDEEQAALARGGAEQGAAGPARQCQRPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Beta-adrenergic receptor kinase 1 AGC GRK BARK P25098 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29376 LSM12::PAIP1 ENSG00000161654.10::ENSG00000172239.14 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 594 FALSE NA FALSE NA LSM12 ENSG00000161654.10 protein_coding - - chr17:44034328-44067619:- chr17:44063801:- chr17:42111696-42144987:- chr17:42141169:- PAIP1 ENSG00000172239.14 protein_coding - - chr5:43526267-43557758:- chr5:43543116:- chr5:43526369-43557860:- chr5:43543218:- chr17:44060750,chr17:44060755 chr5:43547708,chr5:43547710 NA NA chr17:42138118,chr17:42138123 chr5:43547810,chr5:43547812 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LSM12_LSM|8-66|3.5e-33^LSM14|11-51|3.6e-05^AD|81-165|9.8e-29^Gemin6_C|131-169|2.9e-06 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr5] 33 19 27.69 14.62 ONLY_REF_SPLICE YES_LDAS 0.5382 GT 1.9086 AG 1.7465 ENST00000293406.8 1-258 ENST00000436644.6 385-1203 chr17|-|[2]44063801-44063934[1]|[0]44066464-44066587[0]<==>chr5|-|[2]43527376-43527469[2]|[1]43529786-43529879[1]|[0]43533738-43533792[0]|[2]43534853-43534970[2]|[1]43535534-43535640[0]|[2]43536819-43536944[0]|[2]43538924-43539035[2]|[1]43543004-43543116[0] atggcggctcctccgggcgagtacttcagcgttgggagccaggtgtcgtgccggacgtgccaggagcagcggctgcagggcgaggtggtagcctttgactaccaatccaaaatgctggctttaaaatgtccctcttccagtggaaagcccaaccatgcagacatcttgctcataaacttacagtatgtttcagaagtggaaataattaatgaccgaacagaaacccctcctcccctagcttcactcaatgttagtaagGCCACATCTATCCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTCTTTCTGGGAGAACTTTATCTTAACCTGGAGATCAAGGGAACAAATGGACAGGTTACAAGAGCAGATATTCTTCAGGTTGGTCTTCGAGAATTGCTGAATGCCCTGTTTTCTAATCCTATGGATGACAATTTAATTTGTGCAGTAAAATTGTTAAAGTTGACAGGATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAAAACGTTGTCCTAGATGCAAACTGCAGTAGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTCCGGTCAAGTAACTGGGGCAGAGTCCATGCAACTTCAACATATAGAGAAGCAACACCAGAAAATGATCCTAACTACTTTATGAATGAACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTACCAAGAGAAATACCAAGAATTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCCGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAA MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTETPPPLASLNVSKATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29386 ZFHX3::LINC01572 ENSG00000140836.17::ENSG00000261008.9 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZFHX3 ENSG00000140836.17 protein_coding - - chr16:72782885-73891871:- chr16:72950469:- chr16:72816784-73925770:- chr16:72984368:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72570515:- chr16:72270180-72698913:- chr16:72604414:- chr16:72899508,chr16:72899512 chr16:72611621,chr16:72611622 NA NA chr16:72933407,chr16:72933411 chr16:72645520,chr16:72645521 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ZFHX3:Oncogene"];["TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.12Mb] 12 10 12 8.28 ONLY_REF_SPLICE YES_LDAS 0.2579 GT 1.9329 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE zinc finger homeobox 3 1 Yes endometrial, gastric, prostate epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 29387 KDM4C::RIC1 ENSG00000107077.19::ENSG00000107036.12 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 597 FALSE NA FALSE NA KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:7015929:+ chr9:6720863-7175648:+ chr9:7015929:+ RIC1 ENSG00000107036.12 protein_coding + + chr9:5629025-5776557:+ chr9:5713896:+ chr9:5629025-5776557:+ chr9:5713896:+ chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA chr9:7017482,chr9:7017463,chr9:7017480 chr9:5702480,chr9:5702480,chr9:5702475 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame JmjN|39-73|1.2e-14^JmjC|199-315|7.3e-48^JmjC|344-365|5^zf-HC5HC2H_2|658-671|1.2^PHD_2|734-769|3.5e-16^PHD|734-768|2.3e-07^zf-HC5HC2H_2|736-751|0.42^zf-HC5HC2H_2|776-829|4e-19^PHD|793-801|1.3 ANAPC4_WD40-PARTIAL|~333-344|0.0011^ANAPC4_WD40|355-376|0.32^RIC1|735-987|3.7e-83 ["KDM4C:Oncogene"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.94Mb] 10 3 10 3 ONLY_REF_SPLICE YES_LDAS 0.1654 GT 1.9086 AG 1.8295 ENST00000536108.5 1-2325 ENST00000414202.7 333-4272 chr9|+|[0]6720949-6720997[0]|[1]6792972-6793132[2]|[0]6805599-6805774[1]|[2]6814631-6814745[2]|[0]6849507-6849700[1]|[2]6880012-6880061[0]|[1]6887960-6888063[2]|[0]6893095-6893232[2]|[0]6980925-6981118[1]|[2]6984166-6984404[0]|[1]6986344-6986666[2]|[0]6990416-6990524[0]|[1]7011698-7011879[2]|[0]7013788-7014001[0]|[1]7015853-7015929[2]<==>chr9|+|[2]5713896-5714003[1]|[2]5720182-5720324[0]|[1]5720614-5720750[2]|[0]5732388-5732479[1]|[2]5738450-5738538[0]|[1]5742869-5743013[1]|[2]5743689-5743737[2]|[0]5745931-5746083[2]|[0]5747302-5747505[2]|[0]5753200-5753238[2]|[0]5753536-5753646[2]|[0]5754841-5754930[2]|[0]5756212-5756372[1]|[2]5757313-5757451[2]|[0]5762541-5762660[2]|[0]5763140-5763868[2]|[0]5765414-5765572[2]|[0]5765662-5765798[1]|[2]5768970-5769256[0]|[1]5770087-5770278[0]|[1]5772564-5772741[1]|[2]5772892-5773080[1]|[2]5773958-5774246[2] atgaagcactatgggctgccctggaagaggactgaagaagcagctgcagacactgccctaaccatcatggaggtggccgaggtggaaagtcctctgaaccccagctgtaagataatgaccttcagaccctccatggaggagttccgggagttcaacaaataccttgcatacatggagtctaaaggagcccatcgtgcgggtcttgcaaaggtgattcctcctaaggagtggaagccaagacagtgctatgatgacattgataatttgctcattccagcaccaattcagcagatggtcacagggcagtcaggactgttcactcagtacaacatccagaaaaaagcgatgactgtgaaggagttcaggcagctggccaacagtggcaaatattgtactccaagatacttggattacgaagatttggagcgcaagtactggaagaacttaacttttgtggcacctatctatggtgcagatattaatgggagcatatatgatgagggtgtggatgaatggaacatagctcgcctcaatacagtcttggatgtggttgaagaagagtgtggcatttctattgagggtgtaaataccccatatctctattttggcatgtggaagaccacgtttgcatggcacaccgaagacatggacctctatagcattaattatctccactttggagagcccaagtcttggtatgctatacctccggagcatggaaaacgacttgaaagactagctcaaggttttttcccaagcagctcccaagggtgtgatgcatttcttcgccacaagatgacattgatttctccatcagtattgaagaaatatggtattccctttgacaagataacccaggaggctggagaattcatgatcactttcccatatggctaccatgctggttttaatcatggtttcaactgtgcagaatctacaaattttgctactgtcagatggattgactatggaaaagttgccaaattgtgcacttgcaggaaagacatggtgaagatttcaatggatatctttgtgaggaaatttcagccagacagatatcagctttggaaacaaggaaaggatatatacaccattgatcacacgaagcctactccagcatccacccctgaagtaaaagcatggctgcagaggaggaggaaagtaagaaaagcatcccgaagcttccagtgtgctaggtctacctctaaaaggcctaaggctgatgaggaagaggaagtgtcagatgaagtcgatggggcagaggtccctaaccccgactcagtcacagatgacctcaaggtcagtgaaaagtcagaagcagcagtgaagctgaggaacacagaagcatcttcagaagaagagtcatctgctagcaggatgcaggtggagcagaatttatcagatcatatcaaactctcaggaaacagctgcttaagtacatctgtaacagaagacataaaaactgaggatgacaaagcttatgcatatagaagtgtaccttctatatccagtgaggctgatgattccattccattgtctagtggctatgagaagcccgagaaatcagacccatccgagctttcatggccaaagtcacctgagtcatgctcatcagtggcagagagtaatggtgtgttaacagagggagaagagagtgatgtggagagccatgggaatggccttgaacctggggaaatcccagcggtccccagtggagagagaaatagcttcaaagtccccagtatagcagagggagagaacaaaacctctaagagttggcgccatccacttagcaggcctccagcaagatctccgatgactcttgtgaagcagcaggcgccaagtgatgaagaattgcctgaggttctgtccattgaggaggaagtggaagaaacagagtcttgggcgaaacctctcatccacctttggcagacgaagtcccctaacttcgcagctgagcaagagtataatgcaacagtggccaggatgaagccacactgtgccatctgcactctgctcatgccgtaccacaagccagatagcagcaatgaagaaaatgatgctagatgggagacaaaattagatgaagtcgttacatcggagggaaagactaagcccctcataccagagatgtgttttatttatagtgaagaaaatatagaatattctccacccaatgccttccttgaagaggatggaacaagtctccttatttcctgtgcaaagtgctgcgtacgggttcatgcaagttgttatggtattccttctcatgagatctgtgatggatggctgtgtgcccggtgcaaaagaaatgcgtggacagcaAGGAAGTCCACAAATGAAGGGGACACCCCATTTTAAGGAAGAACAGTGTGCTCCAGCATTAAATTTGGAGATGAGGAAAATACTGGATTTACAAGCACCCATCATGAGTTTGCAGTCTGTGTTGGAAGATCTCCTGGTTGCTACTTCTGATGGACTTCTTCATCTTATTCACTGGGAAGGAATGACAAATGGAAGGAAAGCCATTAATCTTTGCACAGTACCCTTTTCAGTAGACCTGCAGTCATCTAGAGTAGGTTCATTCCTGGGCTTCACAGACGTACACATCAGAGACATGGAATACTGTGCCACACTTGATGGGTTTGCTGTTGTATTTAATGATGGTAAAGTTGGATTTATTACACCAGTGTCAAGTAGATTTACTGCAGAGCAGCTTCATGGAGTTTGGCCACAAGATGTTGTTGACGGAACGTGTGTAGCAGTAAATAACAAGTATCGACTAATGGCATTTGGCTGTGTGAGTGGTTCTGTGCAGGTCTATACAATAGATAACAGCACTGGAGCCATGCTGCTATCTCATAAATTAGAGCTAACAGCAAAACAGTATCCTGACATTTGGAATAAAACAGGAGCTGTTAAATTGATGAGATGGTCTCCTGACAATAGTGTTGTAATAGTGACCTGGGAATACGGAGGCCTTTCTTTATGGAGTGTTTTTGGAGCACAGCTGATTTGTACACTTGGAGGAGATTTTGCTTATAGGTCTGATGGCACCAAAAAAGATCCCCTTAAGATCAACTCTATGAGCTGGGGTGCAGAAGGCTATCACCTATGGGTAATCAGCGGATTTGGTTCTCAAAACACTGAAATTGAGTCTGACCTCAGGAGTGTAGTTAAACAGCCCAGCATCCTGTTATTTCAGTTTATTAAGAGTGTACTCACTGTAAACCCTTGTATGAGTAACCAAGAGCAGGTGTTGCTTCAGGGTGAGGATCGCTTGTACTTGAACTGTGGAGAGGCTTCACAAACCCAGAATCCCAGGAGTTCTTCAACACACTCTGAGCATAAGCCCAGTCGAGAAAAGAGCCCATTTGCAGATGGAGGTTTAGAGTCTCAGGGATTAAGCACTTTACTTGGACATCGGCATTGGCATGTTGTACAGATTTCCAGCACCTATCTAGAGAGCAATTGGCCTATACGGTTTTCAGCTATTGATAAGCTTGGACAGAATATTGCTGTGGTTGGCAAGTTTGGTTTTGCACATTACTCTTTACTCACCAAAAAATGGAAACTTTTTGGAAACATTACCCAGGAGCAAAATATGATCGTGACAGGTGGCTTAGCCTGGTGGAATGATTTTATGGTCCTTGCGTGTTATAACATAAATGACCGTCAAGAAGAGCTTAGAGTATACTTGCGAACATCAAATCTGGACAATGCCTTTGCTCATGTCACCAAAGCACAAGCAGAAACATTACTGCTTAGTGTCTTCCAGGACATGGTAATAGTATTTAGAGCAGACTGTTCAATATGCCTTTACAGTATTGAAAGAAAATCTGATGGTCCAAATACTACTGCTGGTATTCAAGTTCTTCAGGAGGTTTCCATGTCACGCTACATTCCTCACCCTTTCCTGGTGGTATCTGTCACTCTGACATCAGTGAGTACAGAGAATGGAATCACCTTGAAAATGCCACAGCAGGCTCGTGGTGCAGAGAGCATTATGTTAAACCTGGCAGGACAGCTCATCATGATGCAGAGGGACAGGTCAGGCCCACAGATCCGGGAGAAGGACAGTAACCCTAATAACCAAAGGAAACTTCTGCCATTCTGTCCTCCTGTTGTACTAGCCCAGTCTGTTGAAAATGTCTGGACAACGTGTCGAGCAAATAAACAGAAACGTCACCTTCTGGAGGCCCTCTGGCTGAGCTGTGGTGGTGCAGGGATGAAAGTTTGGCTCCCTCTCTTCCCTAGGGATCACCGCAAGCCCCATTCCTTCTTGTCCCAGCGGATCATGCTGCCTTTCCACATCAACATTTACCCGCTAGCTGTTCTGTTTGAAGATGCTTTAGTCCTTGGTGCTGTCAATGACACTTTGCTCTATGATTCTTTATATACTCGGAACAATGCTAGAGAACAGCTGGAGGTGCTCTTCCCTTTCTGTGTTGTGGAGAGAACCTCTCAGATCTACCTCCACCACATTCTACGTCAACTTCTGGTCAGAAACCTTGGGGAGCAAGCCTTGCTCTTGGCCCAGTCCTGTGCCACATTACCTTACTTCCCTCATGTGCTGGAGCTCATGCTCCATGAAGTACTGGAAGAAGAAGCTACCTCACGGGAGCCCATTCCCGACCCTCTGCTTCCCACTGTGGCAAAATTTATCACTGAGTTCCCCCTCTTCCTGCAGACAGTTGTCCATTGTGCCAGGAAGACCGAATATGCCCTGTGGAATTACCTTTTTGCAGCTGTTGGAAACCCTAAGGACTTGTTTGAGGAGTGTTTGATGGCTCAGGATTTGGACACAGCTGCCTCTTACCTTATTATCTTACAGAATATGGAAGTCCCTGCAGTAAGTAGGCAACATGCTACCCTTCTATTCAACACAGCACTAGAACAAGGCAAGTGGGACCTTTGTCGACACATGATTCGATTTCTTAAAGCCATTGGCTCTGGAGAATCTGAGACACCTCCATCCACACCCACAGCTCAGGAACCCAGTTCAAGTGGTGGATTTGAGTTCTTCAGGAATCGAAGCATCAGTTTATCCCAGTCAGCTGAAAATGTTCCTGCCAGTAAATTCAGTTTACAGAAAACACTAAGTATGCCATCTGGTCCCTCTGGAAAAAGATGGAGCAAAGACAGTGACTGTGCTGAGAACATGTATATTGACATGATGCTCTGGAGACATGCTCGGCGCCTCTTAGAAGATGTGAGGTTAAAGGACCTTGGCTGCTTTGCAGCCCAGCTGGGCTTTGAACTAATTAGTTGGCTATGCAAGGAACGTACCCGAGCCGCCCGGGTAGACAACTTTGTAATAGCCCTGAAGAGACTCCACAAAGATTTCCTGTGGCCACTTCCAATCATCCCAGCCTCTTCTATCAGTTCTCCTTTCAAAAATGGAAAATACCGAACTGTGGGAGAGCAGCTGTTAAAGTCTCAATCAGCTGACCCATTTTTGAACCTTGAGATGGATGCTGGCATCTCCAACATCCAGCGAAGTCAGAGCTGGCTCAGCAACATTGGCCCCACCCATCATGAGATAGACACAGCTTCATCCCATGGACCACAAATGCAAGATGCCTTCTTGTCACCTTTATCTAATAAAGGTGATGAATGCAGTATTGGTTCAGCCACAGACTTGACTGAAAGTAGCTCCATGGTGGATGGCGACTGGACAATGGTGGATGAAAATTTCTCTACACTCAGTTTAACTCAGTCAGAGCTGGAGCACATTTCCATGGAGTTGGCCAGTAAAGGGCCTCATAAATCCCAGGTCCAGCTTCGGTATTTGCTACACATTTTCATGGAGGCAGGGTGCCTAGACTGGTGCATCGTTATAGGCCTGATTCTTAGAGAATCCTCAATAATCAATCAGATTTTGGTTATTACACAGTCTTCAGAGGTAGATGGAGAGATGTTACAGAACATAAAGACAGGGCTCCATGCAGTGGACCGATGGGCCTCTACAGACTGTCCTGGATATAAGCCATTTTTAAACATCATTAAGCCACAACTGCAGAAGCTCAGTGAGATAACAGAAGAGCAGGTCCAGCCAGATGCCTTCCAACCAATAACTATGGGTAAGACTCCAGAACAGACTAGCCCCCGGGCAGAGGAGAGCAGGGGCTCCTCCAGCCATGGAAGCATCCCCCAGGGTGAAGTTGGAAGCAGCAATATGGTCAGCCGGAAAGAGGAGGACACAGCCCAAGCAGAGGAGGAAGAACCTTTTCAGGATGGGACTTACGACTGTTCTGTGTCCTAA MKHYGLPWKRTEEAAADTALTIMEVAEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQLANSGKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRKDMVKISMDIFVRKFQPDRYQLWKQGKDIYTIDHTKPTPASTPEVKAWLQRRRKVRKASRSFQCARSTSKRPKADEEEEVSDEVDGAEVPNPDSVTDDLKVSEKSEAAVKLRNTEASSEEESSASRMQVEQNLSDHIKLSGNSCLSTSVTEDIKTEDDKAYAYRSVPSISSEADDSIPLSSGYEKPEKSDPSELSWPKSPESCSSVAESNGVLTEGEESDVESHGNGLEPGEIPAVPSGERNSFKVPSIAEGENKTSKSWRHPLSRPPARSPMTLVKQQAPSDEELPEVLSIEEEVEETESWAKPLIHLWQTKSPNFAAEQEYNATVARMKPHCAICTLLMPYHKPDSSNEENDARWETKLDEVVTSEGKTKPLIPEMCFIYSEENIEYSPPNAFLEEDGTSLLISCAKCCVRVHASCYGIPSHEICDGWLCARCKRNAWTARKSTNEGDTPF*GRTVCSSIKFGDEENTGFTSTHHEFAVCVGRSPGCYF*WTSSSYSLGRNDKWKESH*SLHSTLFSRPAVI*SRFIPGLHRRTHQRHGILCHT*WVCCCI**W*SWIYYTSVK*IYCRAASWSLATRCC*RNVCSSK*QVSTNGIWLCEWFCAGLYNR*QHWSHAAIS*IRANSKTVS*HLE*NRSC*IDEMVS*Q*CCNSDLGIRRPFFMECFWSTADLYTWRRFCL*V*WHQKRSP*DQLYELGCRRLSPMGNQRIWFSKH*N*V*PQECS*TAQHPVISVY*ECTHCKPLYE*PRAGVASG*GSLVLELWRGFTNPESQEFFNTL*A*AQSRKEPICRWRFRVSGIKHFTWTSALACCTDFQHLSREQLAYTVFSY**AWTEYCCGWQVWFCTLLFTHQKMETFWKHYPGAKYDRDRWLSLVE*FYGPCVL*HK*PSRRA*SILANIKSGQCLCSCHQSTSRNITA*CLPGHGNSI*SRLFNMPLQY*KKI*WSKYYCWYSSSSGGFHVTLHSSPFPGGICHSDISEYREWNHLENATAGSWCREHYVKPGRTAHHDAEGQVRPTDPGEGQ*P**PKETSAILSSCCTSPVC*KCLDNVSSK*TETSPSGGPLAELWWCRDESLAPSLP*GSPQAPFLLVPADHAAFPHQHLPASCSV*RCFSPWCCQ*HFAL*FFIYSEQC*RTAGGALPFLCCGENLSDLPPPHSTSTSGQKPWGASLALGPVLCHITLLPSCAGAHAP*STGRRSYLTGAHSRPSASHCGKIYH*VPPLPADSCPLCQEDRICPVELPFCSCWKP*GLV*GVFDGSGFGHSCLLPYYLTEYGSPCSK*ATCYPSIQHSTRTRQVGPLSTHDSIS*SHWLWRI*DTSIHTHSSGTQFKWWI*VLQESKHQFIPVS*KCSCQ*IQFTENTKYAIWSLWKKMEQRQ*LC*EHVY*HDALETCSAPLRRCEVKGPWLLCSPAGL*TN*LAMQGTYPSRPGRQLCNSPEETPQRFPVATSNHPSLFYQFSFQKWKIPNCGRAAVKVSIS*PIFEP*DGCWHLQHPAKSELAQQHWPHPS*DRHSFIPWTTNARCLLVTFI**R**MQYWFSHRLD*K*LHGGWRLDNGG*KFLYTQFNSVRAGAHFHGVGQ*RAS*IPGPASVFATHFHGGRVPRLVHRYRPDS*RILNNQSDFGYYTVFRGRWRDVTEHKDRAPCSGPMGLYRLSWI*AIFKHH*ATTAEAQ*DNRRAGPARCLPTNNYG*DSRTD*PPGRGEQGLLQPWKHPPG*SWKQQYGQPERGGHSPSRGGRTFSGWDLRLFCVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29388 FBXL20::ACACA ENSG00000108306.13::ENSG00000278540.5 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 598 FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39343180:- chr17:37408916-37558776:- chr17:37499433:- ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37263894:- chr17:35441927-35766927:- chr17:35620797:- chr17:39314336,chr17:39314343 chr17:37270424,chr17:37270428 NA NA chr17:37470589,chr17:37470596 chr17:35627315,chr17:35627319 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box-like|29-72|1.8e-19^F-box|29-68|3.7e-12^F-box_4|29-56|1e-05^LRR_4-PARTIAL|95-110~|3.9e-05^LRR_6-PARTIAL|95-110~|0.36^LRR_1|95-103|0.7 ACC_central-PARTIAL|~775-1491|9.7e-257^DUF445|795-871|0.6^DUF445|1233-1435|0.017^Biotin_carb_C|1338-1365|2.2^Biotin_carb_C|1501-1520|7.1^Carboxyl_trans|1591-2144|4.4e-174^DUF445|2148-2230|0.0047 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.85Mb] 10 3 10 3 ONLY_REF_SPLICE YES_LDAS 0.1654 GT 1.9899 AG 1.9329 ENST00000577399.5 1-110 ENST00000617649.4 775-6807 chr17|-|[1]39343180-39343241[0]|[2]39402173-39402220[0]<==>chr17|-|[2]37087316-37087439[2]|[1]37088938-37089074[0]|[2]37096996-37097166[0]|[2]37097830-37097984[1]|[0]37111531-37111643[2]|[1]37113088-37113265[1]|[0]37121355-37121490[0]|[2]37122531-37122627[2]|[1]37125698-37125794[1]|[0]37129365-37129485[0]|[2]37130075-37130218[0]|[2]37149864-37149974[0]|[2]37151301-37151421[2]|[1]37155683-37155780[0]|[2]37161781-37162050[0]|[2]37179260-37179406[0]|[2]37181201-37181356[0]|[2]37188277-37188480[0]|[2]37191120-37191275[0]|[2]37192090-37192305[0]|[2]37193374-37193415[0]|[2]37200139-37200183[0]|[2]37200427-37200483[0]|[2]37205765-37205872[0]|[2]37206783-37206879[2]|[1]37207657-37207800[2]|[1]37210467-37210490[2]|[1]37221724-37221842[0]|[2]37223512-37223601[0]|[2]37224992-37225105[0]|[2]37226339-37226452[0]|[2]37234975-37235099[1]|[0]37240476-37240564[2]|[1]37241953-37242053[0]|[2]37243371-37243559[0]|[2]37244588-37244734[0]|[2]37245080-37245214[0]|[2]37246826-37246976[2]|[1]37248011-37248156[0]|[2]37248593-37248674[2]|[1]37252005-37252108[0]|[2]37252886-37253036[2]|[1]37257703-37257866[0]|[2]37258212-37258373[0]|[2]37259360-37259530[0]|[2]37263685-37263894[0] atggctccgagcagggaccgcctgctgcactttgggttcaaggcgacaatgttctcaaatagtgatgaagctgtaatcaataaaaaacttcccaaagaactcctgttacgGTTCAAGCTGAAGTTCCTGGATCTCCCATATTTGTGATGAGACTAGCCAAACAATCTCGTCATCTGGAGGTGCAGATCTTAGCGGACCAATATGGCAATGCTATCTCTTTGTTTGGTCGTGATTGCTCTGTACAACGCAGGCATCAGAAGATTATTGAAGAAGCACCTGCTACTATTGCTACTCCAGCAGTATTTGAACACATGGAACAGTGTGCGGTGAAACTTGCCAAAATGGTGGGTTATGTGAGTGCTGGGACTGTGGAATACCTGTACAGCCAGGATGGCAGCTTCTACTTTCTGGAATTGAATCCTCGGCTGCAGGTAGAGCACCCTTGTACAGAGATGGTGGCTGATGTCAATCTCCCTGCAGCACAGCTCCAGATTGCCATGGGGATTCCTCTATATAGAATCAAGGATATCCGTATGATGTATGGGGTATCTCCCTGGGGTGATTCTCCCATTGATTTTGAAGATTCTGCACACGTTCCTTGTCCAAGGGGCCATGTTATTGCTGCTCGGATCACTAGTGAAAATCCAGATGAGGGTTTTAAGCCCAGCTCAGGAACAGTTCAGGAGCTAAATTTCCGCAGCAATAAGAATGTTTGGGGATATTTCAGTGTTGCTGCTGCAGGGGGACTTCATGAATTTGCTGATTCTCAGTTTGGTCACTGCTTTTCTTGGGGAGAAAACAGAGAAGAGGCAATTTCAAACATGGTGGTGGCTTTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTTGAATACCTGATCAAATTGTTAGAGACTGAAAGCTTTCAGATGAACAGAATTGATACTGGCTGGCTGGACAGACTGATAGCAGAAAAAGTACAGGCTGAGCGACCTGACACCATGTTGGGGGTTGTGTGTGGTGCCCTCCACGTGGCAGATGTGAGCCTGCGGAATAGCGTCTCTAACTTCCTTCACTCCTTAGAAAGGGGTCAAGTCCTTCCTGCTCATACACTTCTGAATACAGTAGATGTTGAACTTATCTATGAGGGAGTCAAGTATGTACTTAAGGTGACTCGACAGTCCCCCAACTCCTATGTGGTGATCATGAATGGCTCATGTGTAGAAGTAGATGTACATCGGCTGAGTGACGGTGGACTGCTCTTGTCCTATGATGGCAGCAGTTATACTACGTATATGAAAGAGGAAGTGGATAGATATCGCATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCGGTGATGCGCTCACCTTCTGCTGGGAAGTTAATCCAGTACATTGTAGAAGATGGAGGTCATGTGTTTGCCGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTAATGACCTTAACAGCTGTGGAGTCTGGCTGTATCCATTACGTCAAGCGACCTGGAGCAGCTCTTGACCCTGGCTGTGTACTAGCCAAAATGCAACTGGACAACCCCAGCAAGGTTCAGCAGGCTGAACTTCACACAGGTAGTCTGCCACGGATCCAGAGCACGGCACTCAGAGGCGAGAAACTCCATCGAGTGTTCCATTATGTCCTGGATAATCTGGTCAATGTAATGAATGGATACTGCCTTCCAGATCCTTTCTTTAGCAGCAAGGTAAAAGACTGGGTAGAGCGATTGATGAAAACCCTCAGAGATCCCTCCCTGCCTCTCCTAGAATTGCAAGATATTATGACCAGTGTGTCTGGCCGCATTCCCCCCAATGTGGAGAAGTCTATCAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTCTGTCAGTTTCCCAGCCAGCAGATTGCAAACATCCTAGATAGCCATGCAGCTACATTGAACCGGAAATCTGAACGGGAAGTCTTCTTTATGAATACTCAGAGCATTGTTCAGCTGGTACAGAGGTACCGAAGTGGCATCCGAGGCCACATGAAGGCTGTGGTGATGGATCTGCTCCGGCAGTACCTGCGAGTAGAGACACAATTCCAGAATGGTCACTATGACAAATGTGTATTCGCCCTCCGAGAAGAGAATAAAAGTGACATGAACACTGTACTGAACTACATCTTCTCTCACGCTCAAGTCACCAAGAAGAATCTTCTGGTCACAATGCTTATTGATCAGTTGTGTGGCCGGGACCCTACTCTCACTGATGAGCTGCTGAATATTCTCACAGAGCTAACTCAACTCAGTAAGACCACCAATGCCAAAGTAGCACTTCGAGCACGCCAGGTTCTTATTGCCTCCCATTTGCCATCATATGAGCTTCGCCATAACCAAGTAGAGTCTATCTTCCTATCAGCTATTGACATGTATGGACATCAATTTTGCATTGAGAACCTGCAGAAACTCATCCTATCAGAAACATCTATTTTTGATGTCCTACCAAACTTCTTCTATCACAGCAACCAAGTAGTGAGGATGGCAGCTCTGGAGGTGTATGTTCGAAGGGCTTATATTGCCTATGAACTTAACAGCGTACAACACCGCCAGCTTAAGGACAACACCTGTGTGGTGGAATTCCAGTTCATGCTGCCCACATCTCATCCAAACAGAGGGAACATCCCTACGCTAAACAGAATGTCCTTCTCCTCCAACCTCAACCACTATGGCATGACCCATGTAGCTAGTGTCAGCGATGTACTGTTGGACAACTCATTCACTCCACCTTGTCAGCGGATGGGCGGAATGGTCTCTTTTCGGACTTTTGAAGATTTTGTCAGGATCTTTGATGAAGTGATGGGCTGCTTCTCTGACTCCCCACCCCAGAGTCCCACATTCCCTGAGGCAGGTCACACGTCTCTTTATGATGAGGATAAGGTTCCCAGGGATGAACCAATTCACATTCTCAATGTGGCTATCAAGACTGACTGTGATATTGAGGATGACAGGCTGGCAGCTATGTTCAGAGAATTTACCCAGCAAAATAAAGCTACCCTGGTTGACCATGGGATCCGGCGCCTTACTTTCCTGGTTGCACAAAAGGATTTCAGAAAGCAGGTCAACTATGAGGTGGATCGGAGATTTCATAGAGAATTCCCTAAATTTTTTACATTCCGAGCAAGGGATAAGTTTGAGGAGGATCGTATCTATCGTCATCTGGAGCCTGCTCTGGCTTTCCAGTTAGAGCTGAACCGGATGAGAAATTTTGACCTCACTGCCATTCCATGTGCTAATCACAAGATGCACCTGTATCTCGGGGCAGCCAAGGTGGAAGTGGGCACAGAAGTGACAGACTACAGGTTCTTTGTTCGTGCAATCATCAGGCATTCTGATCTGGTCACCAAGGAAGCTTCTTTTGAATATCTGCAAAATGAAGGGGAGCGGCTACTCCTGGAAGCCATGGATGAGTTGGAAGTTGCTTTTAACAATACAAATGTCCGCACTGACTGTAACCACATCTTCCTCAACTTTGTGCCCACGGTTATCATGGACCCATCAAAGATTGAGGAATCCGTGCGGAGCATGGTAATGCGGTATGGAAGTCGCCTGTGGAAATTGCGCGTCCTCCAGGCAGAACTGAAAATCAACATTCGCCTGACGCCAACTGGAAAAGCAATTCCCATCCGCCTCTTCCTGACAAACGAGTCTGGCTATTACTTGGATATCAGCCTATACAAGGAAGTGACTGACTCCAGGACAGCACAGATCATGTTTCAGGCATATGGAGACAAACAGGGACCACTGCATGGAATGTTAATCAATACTCCATATGTGACCAAAGACCTGCTGCAATCAAAGAGGTTCCAGGCACAATCCTTAGGGACAACATACATATATGATATCCCAGAGATGTTTCGGCAGTCCCTGATCAAACTCTGGGAGTCTATGTCCACTCAAGCATTTCTTCCATCTCCCCCTCTGCCTTCTGACATGCTGACTTACACTGAACTGGTACTGGATGATCAAGGTCAGCTGGTCCACATGAACAGGCTTCCAGGAGGAAATGAGATTGGCATGGTAGCTTGGAAAATGACCTTTAAAAGTCCTGAATATCCAGAAGGCCGAGATATCATTGTTATTGGCAATGACATCACATACCGAATTGGGTCCTTTGGGCCTCAAGAGGATTTGTTATTTCTCAGAGCTTCCGAACTTGCTAGGGCAGAAGGTATTCCACGCATCTATGTATCAGCCAACAGTGGAGCAAGAATCGGACTGGCAGAAGAAATTCGCCATATGTTTCATGTGGCCTGGGTAGATCCTGAGGATCCTTACAAGGGATACAGGTATTTATATCTGACTCCTCAAGATTATAAGAGAGTCAGTGCTCTCAACTCTGTCCATTGTGAACACGTGGAAGATGAAGGAGAATCCAGGTACAAGATAACAGATATTATTGGGAAAGAAGAGGGAATTGGACCCGAGAACCTTCGAGGTTCTGGAATGATTGCTGGAGAATCCTCATTGGCCTATAATGAGATCATTACCATCAGCCTGGTGACGTGCCGGGCCATTGGGATTGGGGCTTACCTTGTCCGGCTGGGACAGAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTAACAGGAGCTGGAGCCCTCAACAAAGTCCTCGGGCGGGAAGTGTACACCTCCAATAACCAGCTGGGGGGCATCCAGATTATGCACAACAATGGGGTGACCCACTGCACTGTGTGTGATGACTTTGAAGGGGTTTTCACTGTCCTGCACTGGCTGTCTTACATGCCCAAGAGCGTGCACAGTTCAGTTCCTCTTCTGAACTCAAAGGATCCTATAGACAGAATCATCGAGTTTGTTCCCACAAAGACCCCATACGATCCTCGATGGATGCTAGCAGGCCGTCCTCACCCAACCCAAAAAGGTCAGTGGTTGAGTGGCTTTTTTGACTATGGATCTTTCTCAGAGATTATGCAGCCCTGGGCACAGACTGTGGTGGTTGGTAGAGCCAGGCTAGGAGGAATACCTGTGGGAGTTGTTGCTGTAGAAACCCGAACAGTAGAACTAAGTATCCCAGCTGATCCAGCAAACCTGGATTCTGAAGCCAAGATAATCCAGCAGGCTGGCCAGGTTTGGTTCCCAGATTCTGCGTTTAAGACGTATCAGGCCATCAAGGACTTCAACCGGGAAGGGCTGCCTCTGATGGTCTTTGCCAACTGGAGAGGCTTCTCTGGTGGAATGAAAGATATGTACGACCAAGTGCTGAAGTTTGGTGCTTACATTGTGGATGGCTTGAGGGAGTGCTGCCAGCCTGTGCTGGTTTACATTCCTCCCCAGGCTGAGCTGCGGGGTGGCTCCTGGGTGGTGATTGACTCCTCCATCAACCCCCGGCACATGGAGATGTATGCTGACCGAGAAAGCAGGGGATCTGTTCTGGAGCCAGAAGGGACAGTAGAAATCAAATTCCGCAGAAAGGATCTGGTGAAAACCATGCGTCGGGTGGACCCAGTCTACATCCACTTGGCTGAGCGATTGGGGACCCCAGAGCTAAGCACAGCTGAGCGGAAGGAGTTGGAGAACAAGTTGAAGGAGCGGGAGGAATTCCTAATTCCCATTTACCATCAGGTAGCCGTGCAGTTTGCTGACTTGCACGACACACCAGGCCGGATGCAGGAGAAGGGTGTTATTAGCGATATCCTGGATTGGAAAACATCCCGTACCTTCTTCTACTGGCGGCTGAGGCGTCTTCTGCTGGAGGACCTGGTCAAGAAGAAAATCCACAATGCCAACCCTGAGCTGACTGATGGCCAGATTCAAGCCATGTTAAGGCGCTGGTTTGTGGAAGTGGAAGGAACAGTGAAGGCTTATGTTTGGGACAATAATAAGGATCTGGCGGAGTGGCTAGAGAAACAGCTGACAGAGGAGGATGGTGTTCACTCGGTAATAGAGGAAAACATCAAATGCATCAGCAGAGACTACGTCCTCAAGCAAATCCGCAGCTTGGTCCAGGCCAATCCAGAGGTTGCCATGGATTCCATCATCCATATGACGCAGCACATATCACCCACTCAGCGAGCAGAAGTCATACGGATCCTCTCCACAATGGATTCCCCTTCCACGTAG MAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRFKLKFLDLPYL**D*PNNLVIWRCRS*RTNMAMLSLCLVVIALYNAGIRRLLKKHLLLLLLQQYLNTWNSVR*NLPKWWVM*VLGLWNTCTARMAASTFWN*ILGCR*STLVQRWWLMSISLQHSSRLPWGFLYIESRISV*CMGYLPGVILPLILKILHTFLVQGAMLLLLGSLVKIQMRVLSPAQEQFRS*ISAAIRMFGDISVLLLQGDFMNLLILSLVTAFLGEKTEKRQFQTWWWL*RSCLFGVTFELQLNT*SNC*RLKAFR*TELILAGWTD**QKKYRLSDLTPCWGLCVVPSTWQM*ACGIASLTSFTP*KGVKSFLLIHF*IQ*MLNLSMRESSMYLR*LDSPPTPMW*S*MAHV*K*MYIG*VTVDCSCPMMAAVILRI*KRKWIDIASQLAIKPVCLRRKMTHR*CAHLLLGS*SSTL*KMEVMCLPASAMLRLR**RW**P*QLWSLAVSITSSDLEQLLTLAVY*PKCNWTTPARFSRLNFTQVVCHGSRARHSEARNSIECSIMSWIIWSM**MDTAFQILSLAAR*KTG*SD**KPSEIPPCLS*NCKIL*PVCLAAFPPMWRSLSRRKWLSMLATSHQSSVSFPASRLQTS*IAMQLH*TGNLNGKSSL*ILRALFSWYRGTEVASEAT*RLW*WICSGSTCE*RHNSRMVTMTNVYSPSEKRIKVT*TLY*TTSSLTLKSPRRIFWSQCLLISCVAGTLLSLMSC*IFSQS*LNSVRPPMPK*HFEHARFLLPPICHHMSFAITK*SLSSYQLLTCMDINFALRTCRNSSYQKHLFLMSYQTSSITATK**GWQLWRCMFEGLILPMNLTAYNTASLRTTPVWWNSSSCCPHLIQTEGTSLR*TECPSPPTSTTMA*PM*LVSAMYCWTTHSLHLVSGWAEWSLFGLLKILSGSLMK*WAASLTPHPRVPHSLRQVTRLFMMRIRFPGMNQFTFSMWLSRLTVILRMTGWQLCSENLPSKIKLPWLTMGSGALLSWLHKRISESRSTMRWIGDFIENSLNFLHSEQGISLRRIVSIVIWSLLWLSS*S*TG*EILTSLPFHVLITRCTCISGQPRWKWAQK*QTTGSLFVQSSGILIWSPRKLLLNICKMKGSGYSWKPWMSWKLLLTIQMSALTVTTSSSTLCPRLSWTHQRLRNPCGAW*CGMEVACGNCASSRQN*KSTFA*RQLEKQFPSASS*QTSLAITWISAYTRK*LTPGQHRSCFRHMETNRDHCMEC*SILHM*PKTCCNQRGSRHNP*GQHTYMISQRCFGSP*SNSGSLCPLKHFFHLPLCLLTC*LTLNWYWMIKVSWST*TGFQEEMRLAW*LGK*PLKVLNIQKAEISLLLAMTSHTELGPLGLKRICYFSELPNLLGQKVFHASMYQPTVEQESDWQKKFAICFMWPG*ILRILTRDTGIYI*LLKIIRESVLSTLSIVNTWKMKENPGTR*QILLGKKRELDPRTFEVLE*LLENPHWPIMRSLPSAW*RAGPLGLGLTLSGWDREPSRLRILT*F*QELEPSTKSSGGKCTPPITSWGASRLCTTMG*PTALCVMTLKGFSLSCTGCLTCPRACTVQFLF*TQRIL*TESSSLFPQRPHTILDGC*QAVLTQPKKVSG*VAFLTMDLSQRLCSPGHRLWWLVEPG*EEYLWELLL*KPEQ*N*VSQLIQQTWILKPR*SSRLARFGSQILRLRRIRPSRTSTGKGCL*WSLPTGEASLVE*KICTTKC*SLVLTLWMA*GSAASLCWFTFLPRLSCGVAPGW*LTPPSTPGTWRCMLTEKAGDLFWSQKGQ*KSNSAERIW*KPCVGWTQSTSTWLSDWGPQS*AQLSGRSWRTS*RSGRNS*FPFTIR*PCSLLTCTTHQAGCRRRVLLAISWIGKHPVPSSTGG*GVFCWRTWSRRKSTMPTLS*LMARFKPC*GAGLWKWKEQ*RLMFGTIIRIWRSG*RNS*QRRMVFTR**RKTSNASAETTSSSKSAAWSRPIQRLPWIPSSI*RSTYHPLSEQKSYGSSPQWIPLPR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29389 NFAT5::WWP2 ENSG00000102908.23::ENSG00000198373.13 KYSE70 SRR8615482 SRR8652094 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69647167:+ chr16:69598997-69738569:+ chr16:69681070:+ WWP2 ENSG00000198373.13 protein_coding + + chr16:69762328-69941741:+ chr16:69888039:+ chr16:69796231-69975644:+ chr16:69921942:+ chr16:69650070 chr16:69877204 NA NA chr16:69683973 chr16:69911107 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RHD_DNA_bind-PARTIAL|300-393~|1e-23 WW-PARTIAL|~356-359|2.3e-13^HECT|450-752|1.4e-104 ["NFAT5:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.06Mb];NEIGHBORS[57640] 8 6 8 4.22 ONLY_REF_SPLICE YES_LDAS 0.1555 GT 1.7819 AG 1.9219 ENST00000349945.7 1-393 ENST00000356003.6 356-2265 chr16|+|[0]69566302-69566374[0]|[1]69568495-69568548[0]|[1]69626403-69626528[0]|[1]69647028-69647167[2]<==>chr16|+|[1]69888039-69888249[1]|[2]69908761-69908850[1]|[2]69917709-69917883[2]|[0]69925430-69925484[0]|[1]69929448-69929529[1]|[2]69930130-69930258[1]|[2]69931152-69931227[2]|[0]69931509-69931580[2]|[0]69931802-69931890[1]|[2]69933970-69934129[2]|[0]69935853-69935986[1]|[2]69936312-69936452[1]|[2]69937118-69937238[2]|[0]69937548-69937652[2]|[0]69939027-69939123[0]|[1]69939341-69939413[1]|[2]69939841-69939940[2] atgccctcggacttcatctcattgctcagcgcggacctagacctggaatcgcccaagtccctctactcgcgagattctctgaagttacacccatcacagaattttcatagagctggactattggaagaatctgtctatgatcttctcccaaaggagttacagttacctccatctagagaaacatctgtagcatcaatgagtcagacaagcggtggtgaggcaggctcgcctcctccagctgttgttgctgctgatgcttcttcagctccctcctcttcctccatgggcggtgcttgcagctcctttaccacctcttccagccctaccatttattctacctcagtcaccgacagcaaggctatgcaagtggagagctgctcctcagccgtggggTGAATGATGAACCCACAACAGCCACTGATCCCGAAGAACCTTCCGTTGTTGGTGTGACGTCCCCACCTGCTGCACCCTTGAGTGTGACCCCGAATCCCAACACGACTTCTCTCCCTGCCCCAGCCACACCGGCTGAAGGAGAGGAACCCAGCACTTCGGGTACACAGCAGCTCCCAGCGGCTGCCCAGGCCCCCGACGCTCTGCCTGCTGGATGGGAACAGCGAGAGCTGCCCAACGGACGTGTCTATTATGTTGACCACAATACCAAGACCACCACCTGGGAGCGGCCCCTTCCTCCAGGCTGGGAAAAACGCACAGATCCCCGAGGCAGGTTTTACTATGTGGATCACAATACTCGGACCACCACCTGGCAGCGTCCGACCGCGGAGTACGTGCGCAACTATGAGCAGTGGCAGTCGCAGCGGAATCAGCTCCAGGGGGCCATGCAGCACTTCAGCCAAAGATTCCTCTACCAGTCTTCGAGTGCTTCGACTGACCATGATCCCCTGGGCCCCCTCCCTCCTGGCTGGGAGAAGAGACAGGACAATGGACGGGTGTATTACGTGAACCATAACACTCGCACGACCCAGTGGGAGGATCCCCGGACCCAGGGGATGATCCAGGAACCAGCTCTGCCCCCAGGATGGGAGATGAAATACACCAGCGAGGGGGTGCGATACTTTGTGGACCACAATACCCGCACCACCACCTTTAAGGATCCTCGCCCGGGGTTTGAGTCGGGGACGAAGCAAGGTTCCCCTGGTGCTTATGACCGCAGTTTTCGGTGGAAGTATCACCAGTTCCGTTTCCTCTGCCATTCAAATGCCCTACCTAGCCACGTGAAGATCAGCGTTTCCAGGCAGACGCTTTTCGAAGATTCCTTCCAACAGATCATGAACATGAAACCCTATGACCTGCGCCGCCGGCTCTACATCATCATGCGTGGCGAGGAGGGCCTGGACTATGGGGGCATCGCCAGAGAGTGGTTTTTCCTCCTGTCTCATGAGGTGCTCAACCCTATGTATTGTTTATTTGAATATGCCGGAAAGAACAATTACTGCCTGCAGATCAACCCCGCCTCCTCCATCAACCCGGACCACCTCACCTACTTTCGCTTTATAGGCAGATTCATCGCCATGGCGCTGTACCATGGAAAGTTCATCGACACGGGCTTCACCCTCCCTTTCTACAAGCGGATGCTCAATAAGAGACCAACCCTGAAAGACCTGGAGTCCATTGACCCTGAGTTCTACAACTCCATTGTCTGGATCAAAGAGAACAACCTGGAAGAATGTGGCCTGGAGCTGTACTTCATCCAGGACATGGAGATACTGGGCAAGGTGACGACCCACGAGCTGAAGGAGGGCGGCGAGAGCATCCGGGTCACAGAGGAGAACAAGGAAGAGTACATCATGCTGCTGACTGACTGGCGTTTCACCCGAGGCGTGGAAGAGCAGACCAAAGCCTTCCTGGATGGCTTCAACGAGGTGGCCCCGCTGGAGTGGCTGCGCTACTTTGACGAGAAAGAGCTGGAGCTGATGCTGTGCGGCATGCAGGAGATAGACATGAGCGACTGGCAGAAGAGCACCATCTACCGGCACTACACCAAGAACAGCAAGCAGATCCAGTGGTTCTGGCAGGTGGTGAAGGAGATGGACAACGAGAAGAGGATCCGGCTGCTGCAGTTTGTCACCGGTACCTGCCGCCTGCCCGTCGGGGGATTTGCCGAACTCATCGGTAGCAACGGACCACAGAAGTTTTGCATTGACAAAGTTGGCAAGGAAACCTGGCTGCCCAGAAGCCACACCTGCTTCAACCGTCTGGATCTTCCACCCTACAAGAGCTACGAACAGCTGAGAGAGAAGCTGCTGTATGCCATTGAGGAGACCGAGGGCTTTGGACAGGAGTAA MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLEESVYDLLPKELQLPPSRETSVASMSQTSGGEAGSPPPAVVAADASSAPSSSSMGGACSSFTTSSSPTIYSTSVTDSKAMQVESCSSAVG*MMNPQQPLIPKNLPLLV*RPHLLHP*V*PRIPTRLLSLPQPHRLKERNPALRVHSSSQRLPRPPTLCLLDGNSESCPTDVSIMLTTIPRPPPGSGPFLQAGKNAQIPEAGFTMWITILGPPPGSVRPRSTCATMSSGSRSGISSRGPCSTSAKDSSTSLRVLRLTMIPWAPSLLAGRRDRTMDGCIT*TITLARPSGRIPGPRG*SRNQLCPQDGR*NTPARGCDTLWTTIPAPPPLRILARGLSRGRSKVPLVLMTAVFGGSITSSVSSAIQMPYLAT*RSAFPGRRFSKIPSNRS*T*NPMTCAAGSTSSCVARRAWTMGASPESGFSSCLMRCSTLCIVYLNMPERTITACRSTPPPPSTRTTSPTFAL*ADSSPWRCTMESSSTRASPSLSTSGCSIRDQP*KTWSPLTLSSTTPLSGSKRTTWKNVAWSCTSSRTWRYWAR*RPTS*RRAARASGSQRRTRKSTSCC*LTGVSPEAWKSRPKPSWMASTRWPRWSGCATLTRKSWS*CCAACRR*T*ATGRRAPSTGTTPRTASRSSGSGRW*RRWTTRRGSGCCSLSPVPAACPSGDLPNSSVATDHRSFALTKLARKPGCPEATPASTVWIFHPTRATNS*ERSCCMPLRRPRALDRS FALSE FALSE NA NA TRUE hsa-mir-140 chr16:69933081-69933180:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 69655799 FALSE 69888039 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29394 TANC1::CRLF1 ENSG00000115183.15::ENSG00000006016.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 602 FALSE NA FALSE NA TANC1 ENSG00000115183.15 protein_coding + + chr2:158968640-159232659:+ chr2:159150556:+ chr2:159825152-160089170:+ chr2:160007067:+ CRLF1 ENSG00000006016.12 protein_coding - - chr19:18572220-18607741:- chr19:18594434:- chr19:18683030-18718551:- chr19:18705244:- chr2:159155743,chr2:159155737 chr19:18596522,chr19:18596528 NA NA chr2:160012254,chr2:160012248 chr19:18707332,chr19:18707338 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_16|385-428|2.8e-05^nSTAND3|403-433|0.0024^Ank_2|475-501|0.99^Ank_4|490-516|5.2^nSTAND3|583-635|0.59^TPR_11|651-662|8.9 none ["Klijn_CellLines","DepMap2023"];INTERCHROMOSOMAL[chr2--chr19] 34 25 34 25 ONLY_REF_SPLICE YES_LDAS 0.8026 GT 1.8062 AG 1.2867 ENST00000263635.8 1-682 ENST00000684169.1 1025-1281 chr2|+|[0]159065911-159065971[0]|[1]159097637-159097834[0]|[1]159136194-159136298[0]|[1]159149142-159149272[2]|[0]159150370-159150556[0]<==>chr19|-|[2]18593559-18593579[0]|[2]18594065-18594112[0]|[2]18594247-18594434[1] atgttaaaggctgtgctgaagaagagccgagagggaggaaagggaggcaagaaggaagcaggaagtgactttggtccagagacttctccagtcctgcaccttgaccacagtgctgactctcctgtgagcagtcttcccacagcagaggacacctatagggtgagcttggccaaaggtgtctcgatgtctctgccttcctcacctttgctgcctcgacagtctcacttggtgcaatcaagagtgaacaaaaaatccccaggtcccgtcaggaagcccaagtatgtggaaagccccagagtgcctggagatgcagttataatgccattcagagaagtagccaagccaacagagcctgatgagcatgaagcaaaggccgataatgaaccgagctgttcgccggcagctcaagaactgttgacaaggctgggatttttactgggagaagggatcccaagtgccacacacataaccattgaagacaaaaatgaaaccatgtgcacagctctgagtcaaggcatcagtccttgctccacactaacaagcagcaccgcatctcctagcaccgatagcccctgctcaaccttgaatagctgtgtcagcaagacggcagccaacaaaagtccctgtgagaccattagcagccctagttccaccctggaaagcaaggacagtggaattatagAGCGCCCGGGCCCGGGCGGCGGGGCGTGCGAACCGCGGGGCGGAGAGCCGAGCTCGGGGCCGGTGCGGCGCGAGCTCAAGCAGTTCCTGGGCTGGCTCAAGAAGCACGCGTACTGCTCCAACCTCAGCTTCCGCCTCTACGACCAGTGGCGAGCCTGGATGCAGAAGTCGCACAAGACCCGCAACCAGCACAGGACGAGGGGATCCTGCCCTCGGGCAGACGGGGCACGGCGAGAGGTCCTGCCAGATAAGCTGTAG MLKAVLKKSREGGKGGKKEAGSDFGPETSPVLHLDHSADSPVSSLPTAEDTYRVSLAKGVSMSLPSSPLLPRQSHLVQSRVNKKSPGPVRKPKYVESPRVPGDAVIMPFREVAKPTEPDEHEAKADNEPSCSPAAQELLTRLGFLLGEGIPSATHITIEDKNETMCTALSQGISPCSTLTSSTASPSTDSPCSTLNSCVSKTAANKSPCETISSPSSTLESKDSGIIERPGPGGGACEPRGGEPSSGPVRRELKQFLGWLKKHAYCSNLSFRLYDQWRAWMQKSHKTRNQHRTRGSCPRADGARREVLPDKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29395 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 606 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15681047:+ chrX:15693055-15721847:+ chrX:15699170:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 32 11 32 9.58 ONLY_REF_SPLICE YES_LDAS 0.5656 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29396 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1103 TRUE 414 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:211947430:- chr2:212240442-213403565:- chr2:212812155:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:211932846,chr2:211932855 chr2:212829564,chr2:212829570 NA NA chr2:212797571,chr2:212797580 chr2:213694288,chr2:213694294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB4:ArcherDX_panel","ERBB4:FoundationOne_panel","ERBB4:Oncogene"] 19 4 19 2.88 ONLY_REF_SPLICE YES_LDAS 0.2977 GT 1.8295 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 29401 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 607 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15675778:+ chrX:15693055-15721847:+ chrX:15693901:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 15 5 15 1.42 ONLY_REF_SPLICE YES_LDAS 0.2233 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29402 AGO2::STRN3 ENSG00000123908.12::ENSG00000196792.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 612 FALSE NA FALSE NA AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140544213:- chr8:141530255-141645732:- chr8:141554312:- STRN3 ENSG00000196792.12 protein_coding - - chr14:30893799-31026401:- chr14:30912182:- chr14:31363005-31495607:- chr14:31381388:- chr8:140542446,chr8:140542455 chr14:30931299,chr14:30931305 NA NA chr8:141552545,chr8:141552554 chr14:31400505,chr14:31400511 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ArgoN|36-166|5e-37^ArgoMid|59-83|1.6^ArgoL1|176-226|2.1e-23^PAZ|242-365|1.5e-35^ArgoL2|374-420|8.2e-17^ArgoMid|429-510|1.8e-36^Piwi|518-722|1.3e-72^ArgoMid|546-573|4.9^ArgoN|638-665|4.1^Piwi|723-783|1.3e-27 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr14] 14 8 14 5.89 ONLY_REF_SPLICE YES_LDAS 0.2705 GT 1.5546 AG 1.9086 ENST00000519980.5 1-1839 ENST00000357479.10 1375-2394 chr8|-|[2]140544213-140544303[2]|[1]140547468-140547627[1]|[0]140549114-140549298[2]|[1]140551303-140551436[0]|[2]140555896-140556018[0]|[2]140556167-140556286[0]|[2]140557089-140557236[2]|[1]140558485-140558572[1]|[0]140559395-140559529[1]|[0]140560374-140560510[2]|[1]140562453-140562634[0]|[2]140572812-140572932[2]|[1]140585119-140585311[1]|[0]140635485-140635506[0]<==>chr14|-|[2]30895411-30895580[1]|[0]30895662-30895748[1]|[0]30902536-30902643[1]|[0]30905418-30905558[1]|[0]30906877-30907044[1]|[0]30911041-30911162[2]|[1]30911777-30911824[2]|[1]30912007-30912182[0] atgtactcgggagccggccccgcacttgcacctcctgcgccgccgccccccatccaaggatatgccttcaagcctccacctagacccgactttgggacctccgggagaacaatcaaattacaggccaatttcttcgaaatggacatccccaaaattgacatctatcattatgaattggatatcaagccagagaagtgcccgaggagagttaacagggaaatcgtggaacacatggtccagcactttaaaacacagatctttggggatcggaagcccgtgtttgacggcaggaagaatctatacacagccatgccccttccgattgggagggacaaggtggagctggaggtcacgctgccaggagaaggcaaggatcgcatcttcaaggtgtccatcaagtgggtgtcctgcgtgagcttgcaggcgttacacgatgcactttcagggcggctgcccagcgtcccttttgagacgatccaggccctggacgtggtcatgaggcacttgccatccatgaggtacacccccgtgggccgctccttcttcaccgcgtccgaaggctgctctaaccctcttggcgggggccgagaagtgtggtttggcttccatcagtccgtccggccttctctctggaaaatgatgctgaatattgatgtgtcagcaacagcgttttacaaggcacagccagtaatcgagtttgtttgtgaagttttggattttaaaagtattgaagaacaacaaaaacctctgacagattcccaaagggtaaagtttaccaaagaaattaaaggtctaaaggtggagataacgcactgtgggcagatgaagaggaagtaccgcgtctgcaatgtgacccggcggcccgccagtcaccaaacattcccgctgcagcaggagagcgggcagacggtggagtgcacggtggcccagtatttcaaggacaggcacaagttggttctgcgctacccccacctcccatgtttacaagtcggacaggagcagaaacacacctaccttcccctggaggtctgtaacattgtggcaggacaaagatgtattaaaaaattaacggacaatcagacctcaaccatgatcagagcgactgctaggtcggcgcccgatcggcaagaagagattagcaaattgatgcgaagtgcaagtttcaacacagatccatacgtccgtgaatttggaatcatggtcaaagatgagatgacagacgtgactgggcgggtgctgcagccgccctccatcctctacgggggcaggaataaagctattgcgacccctgtccagggcgtctgggacatgcggaacaagcagttccacacgggcatcgagatcaaggtgtgggccattgcgtgcttcgccccccagcgccagtgcacggaagtccatctgaagtccttcacagagcagctcagaaagatctcgagagacgccggcatgcccatccagggccagccgtgcttctgcaaatacgcgcagggggcggacagcgtggagcccatgttccggcacctgaagaacacgtatgcgggcctgcagctggtggtggtcatcctgcccggcaagacgcccgtgtacgccgaggtcaagcgcgtgggagacacggtgctggggatggccacgcagtgcgtgcagatgaagaacgtgcagaggaccacgccacagaccctgtccaacctctgcctgaagatcaacgtcaagctgggaggcgtgaacaacatcctgctgccccagggcaggccgccggtgttccagcagcccgtcatctttctgggagcagacgtcactcacccccccgccggggatgggaagaagccctccattgccgccTTGCCTGCTAATAAAGATGCCTTTCGAAAGACATGGAATCCCAAGTATACACTACGTAGCCATTTTGATGGAGTACGGGCATTAGCTTTTCATCCTGTAGAACCTGTGCTGGTTACTGCTTCTGAGGACCATACCCTGAAACTTTGGAACCTGCAAAAAACAGTTCCTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGCCTATCTACACATTTAGGGCCCACATCGGCCCTGTTCTGTCATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAGTGGTGGTATTGATGCAACCATCCAGTGGTGGAATATGCCGAGTCCCAGTGTAGATCCATATGATACATATGAGCCAAATGTTCTAGCTGGCACTTTAGTTGGTCATACAGATGCAGTTTGGGGTCTTGCTTATAGTGGCATAAAAAATCAATTACTGTCTTGTTCAGCAGATGGCACTGTTAGGTTATGGAATCCACAAGAAAAATTGCCATGTATTTGCACTTACAATGGAGATAAAAAGCATGGAATACCTACATCAGTTGACTTTATAGGCTGTGATCCAGCTCATATGGTAACCTCTTTCAACACTGGTAGTGCAGTAATTTATGATTTAGAAACATCACAGTCATTGGTGATACTTTCATCACAGGTAGATTCTGGTTTACAATCTAATAATCATATCAACAGAGTAGTAAGTCATCCCACACTTCCTGTTACAATAACTGCTCATGAAGATAGACACATCAAATTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCACTTGGATGCTGTTACAAGTCTAGCAGTAGATCCTAATGGAATCTATTTGATGTCTGGAAGCCATGACTGTTCCATCAGATTATGGAATTTAGACAGCAAGACATGTGTGCAAGAAATAACAGCTCACAGAAAGAAATTGGATGAATCAATTTATGATGTTGCTTTCCACTCGTCAAAAGCATATATAGCTAGTGCAGGAGCTGATGCTCTTGCCAAAGTATTTGTATGA MYSGAGPALAPPAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAALPANKDAFRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNMPSPSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKKHGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29403 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1103 TRUE 414 ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212124752:- chr2:212240442-213403565:- chr2:212989477:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- chr2:211932846,chr2:211932855 chr2:212829564,chr2:212829570 NA NA chr2:212797571,chr2:212797580 chr2:213694288,chr2:213694294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB4:ArcherDX_panel","ERBB4:FoundationOne_panel","ERBB4:Oncogene"] 12 3 12 1.12 ONLY_REF_SPLICE YES_LDAS 0.1784 GT 1.5058 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-548f-2 chr2:212426263-212426360:- FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 29404 CA5BP1::ACE2-DT ENSG00000290746.1::ENSG00000225833.1 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 608 TRUE 1099 TRUE 411 CA5BP1 ENSG00000290746.1 lncRNA + + chrX:15674932-15703724:+ chrX:15675572:+ chrX:15693055-15721847:+ chrX:15693695:+ ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:15682508,chrX:15682507 chrX:15618573,chrX:15618569 NA NA chrX:15700631,chrX:15700630 chrX:15636696,chrX:15636692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.1496 GT 1.5656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29405 AGAP1::EXOSC3 ENSG00000157985.20::ENSG00000107371.14 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 605 FALSE NA FALSE NA AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ EXOSC3 ENSG00000107371.14 protein_coding - - chr9:37759234-37832117:- chr9:37784063:- chr9:37759231-37832114:- chr9:37784060:- chr2:235770879,chr2:235770878 chr9:37796657,chr9:37796658 NA NA chr2:236679523,chr2:236679522 chr9:37796654,chr9:37796655 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ras|338-494|5.8e-21^Roc|338-443|1.6e-06^PH|613-673|3.6e-07^PH_4|615-647|1.9^PH_8|616-650|0.11^PH_11|620-649|0.027^PH_4|739-798|0.00034^PH|759-799|1.9e-07^PH_11|759-796|0.001^PH_6|761-797|5.3e-06^PH_8|762-796|0.0068^ArfGap|823-934|4e-41^PH_11|913-927|6.3^PH|916-926|5.3^Ank_4|948-1001|2.2e-07^Ank_2|950-1038|2.1e-15^Ank_5|977-1021|1.8e-11^Ank|980-1011|1.8e-10^Ank_3|980-1007|7.9e-07^Ank|1013-1039|0.0003^Ank_3|1013-1038|0.35^Ank_4|1015-1037|0.037 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr9] 11 6 11 6 ONLY_REF_SPLICE YES_LDAS 0.2312 GT 1.8892 AG 1.8323 ENST00000409538.5 1-1468 ENST00000327304.10 325-828 chr2|+|[0]235670100-235671057[0]|[1]235709179-235709237[2]|[0]235717557-235717644[0]|[1]235740963-235741048[2]|[0]235744698-235744839[0]|[1]235750354-235750488[0]<==>chr9|-|[2]37780679-37780880[2]|[1]37781986-37782137[0]|[2]37783914-37784063[0] atgtacttgttggacggcagtggcgagcccgcgtcgccacccgcggacgcgatgccgcgcgggacgccccccagaaagactgtctaccgcatctccgtgaccatggtcaggaaggagcagctggccgcgccgggctccggcggcccggacccacgcccggttcggcggccccggcccgcgcgctccccggacgcgcccgggaggcttgaggaggaggccgaggaggcggagggcgccgaggaaccggagggtccccggccgcgcgcttgggatttccgcaccttccgcacccgcagcaccgggcagctggaactggggcggctccggccgtgcgcacgcggcctggaacccgcggacctggccggcagcgccccggccgaggaggagggacgcggctcgcccgcgtccggcagccccgacgtggagggggcccgggccgcgcccctgcggcggagcctgagcttcaggcactggagcgggcctgaggcgccgcaaggccggacactgggcggcggaaggcgccacagcagctccgggagcctggcctgggcgccgtgcgacgaggccgcggccgggaccaccctggagcccgcgaccgccacgcagcccgcctcggagaagcgcaacaccctggacgtgggcgaggtgctcagcaagaacgacgcgctctcggacctggagcgttgggaacgcagtaagagcaagaaccgcacgctggacaacagcgacctgcagcggctggagcgcgcgcgggcggcggccggggccggcgcggcctcggagcaccggctgctgcgcttcttcagcggcatcttcgcgcgcagggacgggggcccgggcggcgggccctcgccacggagcggagcctcgcggccacgcggctacttcagcctgcggcgggccccggccgaagcgcactcgtccagcgccgagagcatcgacggctccccgcgcagagatgccttcgtgaacagccaggaatggacgctgagtcgatctgtcccggagctcaaagtgggaattgtgggtaacttggccagcggcaagtctgccctggtgcaccggtacctgacgggcacatatgtccaggaggagtctccggaaggtggcaggttcaagaaagagattgtcgttgatggacagagctatctgctgctgatcagagatgaagggggccccccggaggcgcagtttgccatgtgggtggacgctgttatatttgtcttcagcttggaggatgaaataagtttccagaccgtttaccactactacagtcgaatggccaactatcggaacacgagcgagattcctctggttctggtgggaacccaggatgccataagttctgctaacccgagggtcatcgatgacgccagggcgaggaagctctccaacgacctgaaacggtgcacgtactacgagacgtgtgctacatacgggctgaatgtggagagggtcttccaggacgTATGTTCCAGTAAAAGGAGACCATGTGATTGGCATAGTGACAGCTAAATCTGGAGATATATTCAAAGTTGATGTTGGAGGGAGTGAGCCAGCTTCTTTGTCTTACTTGTCATTTGAAGGTGCAACTAAAAGAAACAGACCAAATGTGCAGGTTGGAGATCTCATCTATGGCCAGTTTGTGGTTGCTAATAAAGACATGGAACCAGAGATGGTCTGTATTGACAGCTGTGGACGAGCCAATGGAATGGGTGTCATTGGACAGGATGGTCTGCTTTTTAAAGTGACTCTGGGCTTAATTAGAAAGCTATTAGCTCCAGATTGTGAAATCATACAGGAAGTGGGAAAACTCTATCCACTGGAGATAGTATTTGGAATGAATGGAAGAATATGGGTTAAGGCAAAAACCATCCAGCAGACTTTAATTTTGGCAAACATTTTAGAAGCTTGTGAACACATGACGTCAGATCAAAGAAAACAGATCTTCTCCAGATTGGCAGAAAGTTGA MYLLDGSGEPASPPADAMPRGTPPRKTVYRISVTMVRKEQLAAPGSGGPDPRPVRRPRPARSPDAPGRLEEEAEEAEGAEEPEGPRPRAWDFRTFRTRSTGQLELGRLRPCARGLEPADLAGSAPAEEEGRGSPASGSPDVEGARAAPLRRSLSFRHWSGPEAPQGRTLGGGRRHSSSGSLAWAPCDEAAAGTTLEPATATQPASEKRNTLDVGEVLSKNDALSDLERWERSKSKNRTLDNSDLQRLERARAAAGAGAASEHRLLRFFSGIFARRDGGPGGGPSPRSGASRPRGYFSLRRAPAEAHSSSAESIDGSPRRDAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPEAQFAMWVDAVIFVFSLEDEISFQTVYHYYSRMANYRNTSEIPLVLVGTQDAISSANPRVIDDARARKLSNDLKRCTYYETCATYGLNVERVFQDVCSSKRRPCDWHSDS*IWRYIQS*CWRE*ASFFVLLVI*RCN*KKQTKCAGWRSHLWPVCGC**RHGTRDGLY*QLWTSQWNGCHWTGWSAF*SDSGLN*KAISSRL*NHTGSGKTLSTGDSIWNEWKNMG*GKNHPADFNFGKHFRSL*THDVRSKKTDLLQIGRKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29406 WNK1::IQSEC3 ENSG00000060237.19::ENSG00000120645.12 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 611 FALSE NA FALSE NA WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:813814:+ chr12:861745-1020618:+ chr12:922980:+ IQSEC3 ENSG00000120645.12 protein_coding + + chr12:66767-178455:+ chr12:125633:+ chr12:175933-287621:+ chr12:234799:+ chr12:824089 chr12:104288 NA NA chr12:933255 chr12:213454 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PK_Tyr_Ser-Thr|222-475|3.6e-45^Pkinase|226-479|1.9e-58^OSR1_C|500-563|1.2e-29 Sec7|651-839|6.8e-68^IQ|737-743|3^TSC22|765-775|6^IQ_SEC7_PH|859-996|1.5e-64^PH_19|863-916|2.4e-05^HSBP1|965-982|0.05^TSC22|971-983|0.27 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.57Mb] 11 14 11 12.73 ONLY_REF_SPLICE YES_LDAS 0.3228 GT 1.8295 AG 1.9329 ENST00000530271.6 1-932 ENST00000538872.6 624-3549 chr12|+|[0]753566-754324[2]|[0]813642-813814[1]<==>chr12|+|[2]125633-125912[2]|[0]138267-139354[1]|[2]141124-141285[1]|[2]157025-157147[1]|[2]157528-157694[0]|[1]161926-162065[2]|[0]163494-163619[2]|[0]165434-165533[0]|[1]165729-165890[0]|[1]169013-169105[0]|[1]171112-171161[2]|[0]174599-175033[2] atgtctggcggcgccgcagagaagcagagcagcactcccggttccctgttcctctcgccgccggctcctgcccccaagaatggctccagctccgattcctccgtgggggagaaactgggagccgcggccgccgacgctgtgaccggcaggaccgaggagtacaggcgccgccgccacactatggacaaggacagccgtggggcggccgcgaccactaccaccactgagcaccgcttcttccgccggagcgtcatctgtgactccaatgccactgcactggagcttcccggccttcctctttccctgccccagcccagcatccccgcggctgtcccgcagagtgctccaccggagccccaccgggaagagaccgtgaccgccaccgccacttcccaggtagcccagcagcctccagccgctgccgcccctggggaacaggccgtcgcgggccctgccccctcgactgtccccagcagtaccagcaaagaccgcccagtgtcccagcctagccttgtggggagcaaagaggagccgccgccggcgagaagtggcagcggcggcggcagcgccaaggagccacaggaggaacggagccagcagcaggatgatatcgaagagctggagaccaaggccgtgggaatgtctaacgatggccgctttctcaagtttgacatcgaaatcggcagaggctcctttaagacggtctacaaaggtctggacactgaaaccaccgtggaagtcgcctggtgtgaactgcaggatcgaaaattaacaaagtctgagaggcagagatttaaagaagaagctgaaatgttaaaaggtcttcagcatcccaatattgttagattttatgattcctgggaatccacagtaaaaggaaagaagtgcattgttttggtgactgaacttatgacgtctggaacacttaaaacTGATGGCTCCTGCACCCAGGCCGGTGGGGGCATGGAGGACTCCGTGGTGGCAGCGGCGGCGGTGGCAGCCGGCAGACCCAGTGCCCATGCCCCGAAGGCTCAAGCCCAGGAGCTGCAGGAGGAGGAGGAGCGGCCGGGGGCAGGGGCTGCCTCCCCAAGGGCTGGCCCCCAGCACAAGGCCTCCCCCGGCCGGCAGCAGCCTGCCCTGGCGACGGCGCTGTGCCCCCACGCCCCTGCCGCCTCCGATTACGAACTCTCCCTTGACCTAAAGAATAAACAGATTGAAATGCTAGAACATAAGTACGGCGGTCACCTGGTGTCCCGGCGCGCCGCTTGCACCATCCAAACCGCCTTCCGCCAATACCAGCTCAGCAAGAACTTCGAGAAAATCCGCAACTCGCTTCTGGAGAGCCGCCTGCCACGGCGGATCTCCCTGCGCAAGGTGCGGTCACCCACGGCCGAGAGCCTGGCGGCCGAGAAAGCGCTCATGGAGGGCTACGGCCTCGTGGGGCTGCCGCTGGTGCGCTCGCCCTCCCTGCCGCCCACCTTCGCAGGCACCCTCACCGAGCTGGAGGACTCCTTCACCGAGCAGGTGCAATCCCTGGCCAAGTCCATCGACGACGCGCTCAGCACGTGGAGCCTCAAGACCATGTGCTCCCTGCGGGAGAGTGGCGCTTACCAGCTCCACCAGGCCCTGCAGGCGGCCGCGGGGCCCCCAGGCCTGGAGGCCGAGGGGCGGGCGCCGGAGAGCGCGGGCCCCGGGCCCGGGGATGACGCCGCGGAGACCCCCGGCCTGCCCCCGGCCCACAGCGGGACCCTCATGATGGCTTTCCGGGACGTCACGGTGCAGATCGCCAACCAGAACATATCCGTCTCCTCCTCCACGGCTCTGTCGGTGGCCAACTGCCTGGGCGCTCAGACGGTCCAGGCCCCCGCAGAGCCCGCGGCGGGCAAGGCCGAGCAGGGCGAGACCTCTGGGCGGGAGGCCCCGGAAGCCCCCGCCGTGGGCCGGGAGGACGCGTCAGCCGAGGACTCATGCGCAGAGGCTGCGGCTAGTGGGGCGGCGGATGGGGCCACAGCCCCCAAAACAGAGGAGGAAGAGGAGGAGGAGGAGACGGCGGAGGTGGGGAGAGGGGCCGAGGCCGAGGCAGGCGACTTGGAGCAGCTGAGCAGCAGCAGCACGTCCACCAAGTCCGCCAAGTCAGGCTCGGAGGCGTCGGCCTCCGCCTCCAAGGACGCCCTGCAGGCCATGATCCTGAGCCTGCCGCGCTACCACTGCGAGAACCCAGCCAGCTGCAAGTCGCCCACGCTCTCCACCGACACCCTGCGCAAGCGGCTCTACCGCATCGGCCTCAACCTCTTCAACATAAACCCCGACAAGGGCATCCAGTTCCTGATCTCACGCGGCTTCATCCCGGACACCCCCATCGGTGTGGCCCATTTCCTCCTCCAGCGAAAGGGCCTCAGCCGCCAGATGATTGGAGAGTTCCTGGGCAACAGCAAGAAGCAGTTCAACCGCGACGTGCTGGACTGCGTGGTGGACGAGATGGACTTCTCCAGCATGGAGCTGGACGAGGCCCTGCGCAAGTTCCAGGCACACATCCGTGTGCAGGGGGAGGCTCAGAAGGTGGAGCGGCTCATTGAGGCCTTCAGCCAGCGCTACTGCATGTGCAACCCCGAAGTGGTTCAGCAGTTCCACAACCCCGACACCATCTTCATCCTCGCCTTCGCCATCATCCTCCTCAACACCGACATGTACAGCCCCAACATCAAGCCTGACCGGAAGATGATGCTGGAGGACTTCATCCGAAACCTTCGAGGTGTGGACGATGGCGCTGACATCCCCAGGGAGCTGGTGGTAGGCATCTATGAGAGGATACAGCAGAAGGAGCTCAAGTCCAATGAGGACCACGTCACGTACGTCACCAAGGTGGAGAAGTCCATTGTGGGCATGAAGACAGTGCTGTCCGTGCCCCACCGCCGCCTGGTGTGCTGCAGCCGGCTCTTCGAGGTGACGGATGTGAACAAGCTGCAGAAGCAGGCAGCGCATCAGAGGGAGGTGTTCCTCTTCAATGACCTGCTGGTGATTCTCAAACTTTGCCCGAAGAAGAAGAGCTCCTCCACGTACACCTTTTGCAAGTCAGTTGGCCTGCTGGGCATGCAGTTCCAGCTCTTTGAGAACGAGTATTACTCTCATGGCATCACACTGGTGACCCCGCTCTCGGGCTCCGAGAAGAAGCAGGTGCTGCATTTCTGTGCCCTGGGCTCGGACGAGATGCAGAAGTTCGTGGAGGACCTGAAGGAGTCCATTGCTGAGGTGACGGAGCTGGAGCAGATCCGAATAGAGTGGGAGCTGGAGAAGCAGCAGGGAACAAAGACACTCTCCTTCAAGCCCTGCGGAGCCCAGGGGGACCCACAGTCAAAGCAAGGATCGCCGACAGCCAAAAGGGAAGCCGCGCTCAGGGAGAGGCCGGCGGAGAGCACGGTGGAGGTGTCAATTCACAACAGGCTTCAAACGTCCCAGCACAACTCCGGGCTGGGGGCCGAGAGGGGAGCGCCGGTGCCGCCGCCAGACCTGCAGCCTAGCCCCCCGAGACAGCAGACCCCACCACTGCCGCCGCCGCCACCCACGCCCCCGGGCACCCTGGTGCAGTGCCAGCAAATTGTCAAGGTCATTGTCCTGGACAAGCCCTGCCTGGCCCGCATGGAGCCCCTGCTGAGCCAGGCTCTCTCCTGCTACACCTCGTCGTCCTCTGACTCCTGCGGCTCCACACCCCTGGGCGGTCCCGGCTCTCCGGTCAAGGTCACCCACCAGCCTCCGCTGCCCCCGCCCCCACCCCCCTACAACCACCCTCACCAGTTCTGTCCCCCAGGCTCCCTGCTGCACGGGCACCGCTACTCCAGTGGCTCAAGGAGCCTGGTGTAG MSGGAAEKQSSTPGSLFLSPPAPAPKNGSSSDSSVGEKLGAAAADAVTGRTEEYRRRRHTMDKDSRGAAATTTTTEHRFFRRSVICDSNATALELPGLPLSLPQPSIPAAVPQSAPPEPHREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVSQPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTDGSCTQAGGGMEDSVVAAAAVAAGRPSAHAPKAQAQELQEEEERPGAGAASPRAGPQHKASPGRQQPALATALCPHAPAASDYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRSPTAESLAAEKALMEGYGLVGLPLVRSPSLPPTFAGTLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLRESGAYQLHQALQAAAGPPGLEAEGRAPESAGPGPGDDAAETPGLPPAHSGTLMMAFRDVTVQIANQNISVSSSTALSVANCLGAQTVQAPAEPAAGKAEQGETSGREAPEAPAVGREDASAEDSCAEAAASGAADGATAPKTEEEEEEEETAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGSEASASASKDALQAMILSLPRYHCENPASCKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSSMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSVPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSSSTYTFCKSVGLLGMQFQLFENEYYSHGITLVTPLSGSEKKQVLHFCALGSDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGTKTLSFKPCGAQGDPQSKQGSPTAKREAALRERPAESTVEVSIHNRLQTSQHNSGLGAERGAPVPPPDLQPSPPRQQTPPLPPPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYTSSSSDSCGSTPLGGPGSPVKVTHQPPLPPPPPPYNHPHQFCPPGSLLHGHRYSSGSRSLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 863490|863490 FALSE|FALSE 247433|234799 FALSE|TRUE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29408 UNK::CD300LD-AS1 ENSG00000132478.10::ENSG00000182352.8 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1102 TRUE 413 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75817526:+ chr17:73780887-73821880:+ chr17:73813607:+ CD300LD-AS1 ENSG00000182352.8 lncRNA + + chr17:74584679-74594209:+ chr17:74590519:+ chr17:72580818-72590348:+ chr17:72586658:+ chr17:75818413,chr17:75818413 chr17:74589376,chr17:74589373 NA NA chr17:73814494,chr17:73814494 chr17:72585515,chr17:72585512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 13 10 5.91 ONLY_REF_SPLICE YES_LDAS 0.2164 GT 1.8892 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29409 DENND4B::NUP210L ENSG00000198837.10::ENSG00000143552.10 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 613 FALSE NA FALSE NA DENND4B ENSG00000198837.10 protein_coding - - chr1:153929501-153946718:- chr1:153938900:- chr1:153901977-153919194:- chr1:153911376:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154054832:- chr1:153965166-154127592:- chr1:154027308:- chr1:153938408 chr1:154056561 NA NA chr1:153910884 chr1:154029037 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame uDENN|225-289|1.6e-20^DENN|325-508|2.2e-62^SPA|408-511|1.9e-05^dDENN|614-663|1.5e-15^DENN|632-704|1.8^PPR_long|640-665|3.5^PPR_long|788-863|1.3e-06^PPR_2|822-862|7.3e-08^PPR_3|822-863|4.3e-05^MAS20|896-933|0.00022^TFIIA|900-951|0.00058^DUF4834|903-933|0.0014^Spt20_SEP|905-952|0.0055^MAS20|976-998|4.6 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.05Mb];LOCAL_REARRANGEMENT:-:[45989] 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.1768 GT 1.8062 AG 1.6895 ENST00000368646.6 1-1998 ENST00000368559.8 3241-5667 chr1|-|[2]153938900-153939045[1]|[0]153939589-153939804[1]|[0]153940156-153940256[2]|[1]153940431-153940606[0]|[2]153940904-153941048[2]|[1]153941231-153941289[0]|[2]153941374-153941440[2]|[1]153941869-153942113[0]|[2]153942187-153942356[1]|[0]153942556-153942625[0]|[2]153942878-153943130[2]|[1]153944058-153944397[1]|[0]153945135-153945144[0]<==>chr1|-|[2]153992835-153992935[1]|[0]153993015-153993089[1]|[0]153995076-153995180[1]|[0]154000856-154001060[0]|[2]154001735-154001985[1]|[0]154009972-154010121[1]|[0]154012244-154012370[0]|[2]154018933-154019069[1]|[0]154022126-154022343[2]|[1]154023122-154023297[0]|[2]154025542-154025716[2]|[1]154027506-154027597[0]|[2]154029896-154030054[0]|[2]154046069-154046200[0]|[2]154046289-154046369[0]|[2]154054228-154054407[0]|[2]154054770-154054832[0] atggaggcagatgcagtgagtgaggggggggccatggcggaggagcggcccccccggctggtggattacttcgtggtagctgggcttgcagggaacggagcacccatccctgaggaaacgtgggttcctgaacccagtgggcccctgcgccctccccggccagctgagcccatcacagatgtggcagtcatcgctagggcactgggcgaggaagtgccccagggctacacatgcatccaggcttctgctgggggccaccccttggaactcagtgctggacttctgggtggaactcaacccgtcatctgctaccgcaggggccgtgacaagccccccctcgttgagctgggggtgttgtatgaggggaaggaacgtcccaagcctggcttccaagtgcttgacacgacaccctacagccactcagcaaacctggcccctccaggccccgggcacccccgcacctacctcacttaccggcgggcagcagagggggcagggctgcatgccctgggcatcactgacctctgcctggtgctgcccagtaagggcgagggcactcctcatacttactgccggctgccccgcaacctcaaccctggcatgtggggcccagcagtgtacctgtgctataaggtgggcctggcgaaggccaacacgctggtgtacgaggcagagctgctgggccgctacccggaggaggacaatgaggcgttcccgctgcccgagtcagtgcccgtcttctgcctgcccatgggggccactatcgagtgctggcctgcccagaccaagtaccccgtgcccgtcttctccacctttgtgctcacgggtgcagctggtgataaggtgtatggtgccgccctgcagttctacgaggcgttcccaagggccaggctatcagagcgacaggcacgggcactgggcctgctgagcgccgtggagcggggtcgggcactggggggcagagctgtgcgcagccggcgtgccatcgctgtgctgtcccgctggcctgccttccctgccttccgcgccttcctcaccttcctttaccgctactccgtctcaggcccccaccgcctacccttggaagcgcacatctcccacttcattcacaacgttcccttcccttccccacagagaccccgcatcctagtgcagatgtctccctatgacaacttgctcctctgtcagcctgtatcctcacccctgcccctcagtggtgccagcttcctgcagctgctgcagagcctgggccctgagctggctatcacactgctgctggctgtgctcacagagcacaagctgctagtccactcgctgcggccagacctgctcaccagcgtctgtgaggccctcgtctcgatgatcttcccactgcactggcagtgcccctacattcctctgtgcccgctggtgctggcagatgtgctgagtgccccagtgcccttcattgtgggtatccactccagctactttgatctgcatgacccgcctgctgatgtcatctgtgtagaccttgataccaacacgctcttccagactgaggaaaagaagctcctctcccctcggaccctgccccgcagaccctacaaggttctgctggccacactgacaaacctgtaccagcagctggaccagacatacactggacctgaggaggaagcatccctggagttcctactgacagactacgaggcagtgtgtggccgcagggcccggctggagcgcgaagtccaaggagccttcctccgcttcatggcctgtctgctcaagggctaccgggtcttcctgcgcccactcacccaggccccctccgagggagctcgtgatgttgacaaccttttcttcctgcagggcttcctcaaatcccgggaacgctccagccacaaactttactctcagctgctgcacacacagatgttctcacagttcattgaggagtgctcttttggctctgctcgccatgctgcccttgaattctttgactcttgtgttgaaaagGTGTTTCCTCCATTCAGACTTCTTCCAGAGAAAATGACACTGATTCCAATGAATATGATGCAGGTAATGTCTGAAGGTGGCCCCCAGCCCCAATCCATCGTTCACTTCTCCATCAGTAATCAGACCGTGGCTGTTGTTAATAGGAGGGGGCAAGTTACAGGGAAGATTGTTGGCACAGCTGTGGTTCATGGCACCATCCAGACAGTAAATGAAGATACTGGCAAAGTCATTGTGTTTTCTCAGGATGAAGTACAGATTGAAGTTGTTCAGCTAAGGGCTGTTAGGATCCTTGCAGCTGCAACTCGGCTCATCACAGCTACCAAGATGCCAGTTTATGTCATGGGAGTAACCAGTACCCAGACCCCTTTCTCCTTCAGCAATGCTAATCCTGGGCTCACATTCCACTGGTCTATGAGCAAAAGGGATGTATTGGATCTAGTGCCCAGGCATTCAGAGGTTTTTCTACAGCTCCCAGTAGAGCATAACTTTGCCATGGTTGTCCATACAAAAGCAGCAGGCAGGACCAGTATCAAGGTCACTGTTCACTGCATGAACAGTTCCTCTGGGCAGTTTGAGGGGAATTTGTTGGAACTCTCTGATGAAGTACAGATCCTGGTGTTTGAAAAACTCCAACTCTTCTATCCAGAGTGCCAACCAGAGCAGATTCTGATGCCTATAAATTCTCAGCTCAAACTCCATACCAACAGGGAAGGAGCTGCCTTCGTGAGTTCTCGTGTTCTCAAGTGTTTCCCTAATTCATCCGTCATTGAGGAGGATGGTGAAGGGCTCCTGAAAGCTGGTTCCATTGCAGGTACTGCTGTATTGGAAGTCACTTCTATAGAACCTTTTGGAGTCAACCAAACAACCATAACTGGGGTCCAGGTAGCACCGGTGACATACCTGCGAGTGAGCAGCCAACCCAAGCTATACACAGCCCAAGGAAGGACCCTGTCAGCATTTCCCTTGGGCATGTCTCTTACCTTCACTGTTCAGTTTTATAATAGTATCGGAGAGAAATTCCACACACACAATACCCAGCTTTATCTGGCTCTGAACAGAGATGACTTGCTGCATATTGGACCAGGGAATAAGAACTATACTTACATGGCCCAGGCTGTGAACAGAGGGCTGACACTTGTGGGGCTTTGGGACCGGAGACATCCAGGCATGGCAGATTATATTCCTGTTGCTGTAGAGCATGCCATTGAGCCAGACACCAAGCTTACCTTTGTTGGAGATATCATCTGCTTCAGTACTCACCTTGTCAGCCAGCATGGTGAACCTGGGATATGGATGATTTCTGCCAACAATATTCTACAGACAGACATTGTCACTGGAGTAGGAGTGGCCAGGAGTCCGGGGACTGCAATGATTTTTCATGACATCCCAGGAGTAGTGAAAACATATCGAGAGGTGGTGGTCAATGCATCATCAAGATTAATGCTCAGTTATGACCTCAAGACTTATCTCACCAATACCCTCAATTCAACTGTATTCAAGCTCTTCATCACCACTGGCAGAAATGGTGTCAATCTTAAAGGATTCTGTACCCCAAACCAGGCCTTGGCCATTACAAAAGTACTTCTTCCAGCGACCCTCATGCTGTGCCATGTACAGTTCAGTAATACTTTGCTAGACATTCCAGCAAGTAAAGTCTTTCAGGTCCATTCAGATTTCAGTATGGAGAAAGGGGTTTATGTCTGCATAATCAAGGTTCGACCGCAGTCAGAGGAGCTGCTACAGGCCCTCAGTGTGGCTGACACCTCAGTCTATGGGTGGGCTACACTGGTCAGTGAACGTAGCAAGAATGGAATGCAACGAATCCTCATTCCTTTCATCCCAGCCTTTTATATTAACCAGTCAGAATTGGTTCTTAGCCACAAACAAGATATCGGGGAGATAAGAGTACTGGGAGTGGACAGAGTTCTTAGGAAGCTAGAGGTCATCTCCAGCTCCCCAGTTCTAGTGGTCGCTGGCCATAGCCACTCTCCCCTCACTCCTGGCCTGGCCATTTACTCTGTAAGAGTGGTCAACTTCACTTCCTTCCAGCAAATGGCATCACCTGTTTTCATCAATATTTCCTGTGTACTCACCAGTCAAAGTGAGGCAGTGGTAGTGAGGGCTATGAAAGATAAGTTGGGTGCAGATCACTGTGAAGATTCCGCCATCCTCAAGCGGTTCACTGGCTCTTACCAGATCCTGCTCTTGACCCTCTTTGCAGTGCTGGCATCAACAGCTTCCATCTTCCTAGCATACAATGCCTTCCTAAACAAGATACAAACAGTTCCAGTTGTGTATGTACCAACTCTAGGAACACCACAGCCAGGTTTTTTTAACTCCACAAGTTCTCCCCCTCACTTCATGAGTCTACAACCTCCATTGGCCCAAAGTCGGCTGCAACATTGGTTATGGAGTATAAGGCACTAA MEADAVSEGGAMAEERPPRLVDYFVVAGLAGNGAPIPEETWVPEPSGPLRPPRPAEPITDVAVIARALGEEVPQGYTCIQASAGGHPLELSAGLLGGTQPVICYRRGRDKPPLVELGVLYEGKERPKPGFQVLDTTPYSHSANLAPPGPGHPRTYLTYRRAAEGAGLHALGITDLCLVLPSKGEGTPHTYCRLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAFPRARLSERQARALGLLSAVERGRALGGRAVRSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQPVSSPLPLSGASFLQLLQSLGPELAITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKLLSPRTLPRRPYKVLLATLTNLYQQLDQTYTGPEEEASLEFLLTDYEAVCGRRARLEREVQGAFLRFMACLLKGYRVFLRPLTQAPSEGARDVDNLFFLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVEKVFPPFRLLPEKMTLIPMNMMQVMSEGGPQPQSIVHFSISNQTVAVVNRRGQVTGKIVGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILAAATRLITATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMSKRDVLDLVPRHSEVFLQLPVEHNFAMVVHTKAAGRTSIKVTVHCMNSSSGQFEGNLLELSDEVQILVFEKLQLFYPECQPEQILMPINSQLKLHTNREGAAFVSSRVLKCFPNSSVIEEDGEGLLKAGSIAGTAVLEVTSIEPFGVNQTTITGVQVAPVTYLRVSSQPKLYTAQGRTLSAFPLGMSLTFTVQFYNSIGEKFHTHNTQLYLALNRDDLLHIGPGNKNYTYMAQAVNRGLTLVGLWDRRHPGMADYIPVAVEHAIEPDTKLTFVGDIICFSTHLVSQHGEPGIWMISANNILQTDIVTGVGVARSPGTAMIFHDIPGVVKTYREVVVNASSRLMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQFSNTLLDIPASKVFQVHSDFSMEKGVYVCIIKVRPQSEELLQALSVADTSVYGWATLVSERSKNGMQRILIPFIPAFYINQSELVLSHKQDIGEIRVLGVDRVLRKLEVISSSPVLVVAGHSHSPLTPGLAIYSVRVVNFTSFQQMASPVFINISCVLTSQSEAVVVRAMKDKLGADHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29412 UNK::CD300LD-AS1 ENSG00000132478.10::ENSG00000182352.8 JHH1 SRR8615483 SRR8652064 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1102 TRUE 413 UNK ENSG00000132478.10 protein_coding + + chr17:75784806-75825799:+ chr17:75818168:+ chr17:73780887-73821880:+ chr17:73814249:+ CD300LD-AS1 ENSG00000182352.8 lncRNA + + chr17:74584679-74594209:+ chr17:74590519:+ chr17:72580818-72590348:+ chr17:72586658:+ chr17:75818413,chr17:75818413 chr17:74589376,chr17:74589373 NA NA chr17:73814494,chr17:73814494 chr17:72585515,chr17:72585512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 18 7 12.09 ONLY_REF_SPLICE YES_LDAS 0.2597 GT 1.8323 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29413 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 ISHIKAWAHERAKLIO02ER SRR8615493 SRR8652063 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79934695:- chr12:80167343-80329240:- chr12:80328475:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79621207:- chr12:79968759-80084744:- chr12:80014987:- chr12:79907994,chr12:79907997 chr12:79676974,chr12:79676974 NA NA chr12:80301774,chr12:80301777 chr12:80070754,chr12:80070754 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|44-88|1.9e-09^Ank_3|44-67|0.0029^Ank|46-70|0.00024^Ank_2|46-134|4.3e-24^Ank_5|47-78|6.6e-05^Ank_5|59-111|5.8e-13^Ank|72-104|1.1e-11^Ank_3|72-100|4e-10^Ank_4|74-126|5.7e-18^Ank|106-136|1.6e-09^Ank_5|109-146|1.4e-10^Ank_3|109-132|4.6e-05^Ank_4|119-146|7.7e-05^Ank_2|135-158|0.13^Ank|139-157|0.056^Ank_3|139-166|2.8^Ank_2-PARTIAL|188-237~|6.5e-18^Ank_5|197-237|1.6e-10^Ank|199-229|1.5e-10^Ank_3|199-227|5.9e-07^Ank_4-PARTIAL|200-237~|1.6e-16^Ank-PARTIAL|231-237~|6e-09^Ank_5-PARTIAL|231-237~|0.00068^Ank_3-PARTIAL|231-237~|1.2e-05^Ank_4-PARTIAL|234-237~|6.2e-07 none ["PAWR:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[82466] 127 61 127 61 ONLY_REF_SPLICE YES_LDAS 2.0881 GT 1.8295 AG 1.9329 ENST00000261207.9 1-237 ENST00000328827.9 517-1023 chr12|-|[2]79934695-79934931[0]<==>chr12|-|[2]79592607-79592693[0]|[2]79594329-79594433[0]|[2]79596511-79596658[2]|[1]79613575-79613609[0]|[2]79621076-79621207[0] atgaagatggcggacgcgaagcagaagcggaacgagcagctgaaacgctggatcggctccgagacggacctcgagcctccggtggtgaagcgccagaagaccaaggtgaagttcgacgatggcgccgtcttcctggctgcttgctccagcggcgacacggacgaggtcctcaagctgctgcaccgcggcgccgacatcaattacgccaatgtggacggactcactgccctgcaccagTGCTTAGATGAGTACGAAGATGATGAAGCAGGGCAGAAAGAGCGGAAACGAGAAGATGCAATTACACAACAGAACACTATTCAGAATGAAGCTGTAAACTTACTAGATCCAGGCAGTTCCTATCTGCTACAGGAGCCACCTAGAACAGTTTCAGGCAGATATAAAAGCACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATAGAAGTGGGTTCCCTAGATATAACAGGGATGCAAATGTTTCAGGTACTCTGGTTTCAAGTAGCACACTGGAAAAGAAAATTGAAGATCTTGAAAAGGAAGTAGTAAGAGAAAGACAAGAAAACCTAAGACTTGTGAGACTGATGCAAGATAAAGAGGAAATGATTGGAAAACTCAAAGAAGAAATTGATTTATTAAATAGAGACCTAGATGACATAGAAGATGAAAATGAACAGCTAAAGCAGGAAAATAAAACTCTTTTGAAAGTTGTGGGTCAGCTGACCAGGTAG MKMADAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQCLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29423 SUFU::GBF1 ENSG00000107882.12::ENSG00000107862.7 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 614 FALSE NA FALSE NA SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102550106:+ chr10:104263729-104393292:+ chr10:104309863:+ GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102344051:+ chr10:104005128-104142656:+ chr10:104103808:+ chr10:102561407 chr10:102335852 NA NA chr10:104321164 chr10:104095609 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SUFU|64-240|3.5e-50^SUFU_C|253-433|4.9e-58 Sec7-like_HUS-PARTIAL|~164-190|2^DUF1045|422-462|5.7e-05^Sec7-like_HUS|435-584|2.1e-36^Sec7-like_HDS|522-561|0.47^Sec7|732-917|1.7e-72^Sec7-like_HDS|1045-1068|0.003^Sec7-like_HDS|1131-1146|0.43^Sec7-like_HUS|1166-1285|0.0021^Sec7-like_HDS|1278-1304|0.029 ["SUFU:ArcherDX_panel","SUFU:FoundationOne_panel","SUFU:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.12Mb] 57 16 57 16 ONLY_REF_SPLICE YES_LDAS 0.4224 GT 1.9899 AG 1.8892 ENST00000369899.6 1-454 ENST00000673650.1 164-5679 chr10|+|[0]102504153-102504334[1]|[2]102509169-102509303[1]|[2]102549970-102550106[0]<==>chr10|+|[1]102344051-102344182[0]|[1]102351256-102351374[2]|[0]102351843-102351951[0]|[1]102352458-102352518[1]|[2]102353600-102353654[2]|[0]102354370-102354468[2]|[0]102358039-102358186[0]|[1]102358506-102358729[2]|[0]102359270-102359435[0]|[1]102360184-102360395[2]|[0]102361022-102361120[2]|[0]102361718-102361912[2]|[0]102362475-102362664[0]|[1]102363256-102363396[0]|[1]102363710-102363798[2]|[0]102365397-102365599[1]|[2]102366383-102366506[2]|[0]102367085-102367210[2]|[0]102367478-102367560[1]|[2]102368218-102368454[1]|[2]102368739-102368832[2]|[0]102369211-102369387[2]|[0]102369711-102369775[1]|[2]102369861-102369984[2]|[0]102370174-102370245[2]|[0]102370384-102370478[1]|[2]102370707-102370860[2]|[0]102375359-102375584[0]|[1]102376272-102376432[2]|[0]102376560-102376800[0]|[1]102376935-102377140[2]|[0]102379284-102379434[0]|[1]102379521-102379651[2]|[0]102379853-102379954[2]|[0]102380249-102380362[2]|[0]102380506-102380686[0]|[1]102381127-102381255[0]|[1]102382056-102382336[2] atggcggagctgcggcctagcggcgcccccggccccaccgcgcccccggcccctggcccgactgcccccccggccttcgcttcgctctttcccccgggactgcacgccatctacggagagtgccgccgcctttaccctgaccagccgaacccgctccaggttaccgctatcgtcaagtactggttgggtggcccagaccccttggactatgttagcatgtacaggaatgtggggagcccttctgctaacatccccgagcactggcactacatcagcttcggcctgagtgatctctatggtgacaacagagtccatgagtttacaggaacagatggacctagtggttttggctttgagttgacctttcgtctgaagagagaaactggggagtctgccccaccaacatggcccgcagagttaatgcagggcttggcacgatacgtgttccagtcagAACTCTCAGAAATTGAGCCCAATGTATTCCTTCGACCTTTTCTGGAAGTGATTCGCTCTGAAGATACCACTGGCCCTATCACTGGACTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTATGCACTCATAGATCCCACCCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACCCATGCTCGTTTTGTGGGCACGGATCCTGCCAGTGATGAAGTTGTCCTGATGAAAATCCTTCAGGTTCTACGGACTCTGCTGCTAACCCCAGTGGGTGCCCACCTAACCAATGAATCTGTGTGTGAGATTATGCAGTCTTGCTTCCGGATCTGCTTTGAAATGAGGCTCAGTGAGTTATTGAGAAAATCCGCAGAGCACACTCTCGTAGACATGGTGCAGCTGCTCTTCACAAGGTTACCTCAGTTTAAAGAAGAACCCAAGAACTATGTGGGGACCAACATGAAGAAGATATCTCCATGTCTCCTCAACAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTTAGAGAGGGTACTACTCTTTAAGAACCTCAAGCTGAAAATGAGAGCCGGAGGCATGAGTGATTCATCCAAATGGAAGAAACAGAAGAGATCCCCTCGGCCCCCACGCCATATGACCAAAGTCACACCAGGTTCAGAGCTGCCCACTCCCAATGGAACCACCTTATCATCTAACCTCACTGGTGGCATGCCCTTCATTGATGTGCCCACTCCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCAGCAGTGGTCAGTCCCTCTACAGACAGTGGCCTGGAATTCTCCTCCCAAACCACTTCCAAGGAAGACCTTACTGATCTAGAGCAACCTGGCTCTCCAGGGTACAGCACAGCTACAGAGCCTGGAAGCAGTGAGCTAGGTGTTCCCGAGCAGCCTGACCTCCAGGAAGGGACCCATGTGGAAAAGTCCCAGTCAGCATCTGTGGAGTCCATCCCTGAAGTGTTAGAGGAGTGCACGTCCCCTGCCGACCACTCTGACTCTGCCTCTGTCCATGACATGGATTACGTCAATCCCCGGGGCGTGCGCTTTACACAGTCCTCCCAGAAAGAAGGCACAGCTTTGGTCCCCTATGGTCTTCCCTGCATCCGCGAGCTCTTCCGCTTCCTCATCTCCCTCACCAATCCACACGACCGCCATAACTCAGAGGTTATGATTCACATGGGACTGCATTTGCTGACAGTGGCCCTTGAGTCAGCCCCTGTAGCCCAGTGCCAGACCCTCTTGGGCCTCATCAAGGATGAGATGTGCCGTCACTTATTCCAGCTACTCAGCATAGAGCGACTAAACCTTTATGCTGCTTCCCTGCGAGTATGCTTCCTACTGTTTGAGAGCATGCGAGAGCACCTCAAGTTCCAAATGGAGATGTACATCAAAAAGCTTATGGAGATCATCACTGTGGAGAACCCCAAGATGCCTTATGAGATGAAGGAGATGGCACTGGAGGCCATTGTGCAGCTCTGGCGCATCCCCAGCTTTGTCACAGAGCTCTACATCAACTATGATTGTGACTACTACTGTTCCAACCTCTTTGAGGAACTCACAAAGCTGCTGTCCAAGAATGCCTTCCCTGTGTCTGGTCAACTCTATACAACACACCTACTATCTCTTGATGCCCTATTGACAGTGATTGACAGCACCGAGGCCCACTGCCAGGCTAAAGTCCTCAACAGCCTCACCCAGCAAGAGAAGAAGGAGACAGCCAGACCAAGCTGTGAGATAGTAGATGGCACCCGAGAAGCTAGCAATACTGAGAGAACTGCCAGCGATGGGAAAGCTGTAGGCATGGCCTCAGACATCCCAGGCCTGCATCTGCCAGGTGGAGGGCGGCTGCCACCAGAACATGGGAAATCAGGATGCAGTGATCTGGAGGAAGCTGTTGACTCTGGGGCTGACAAAAAGTTTGCCCGGAAGCCACCCCGATTTTCCTGTCTCCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAGAAGCTGCTAATCACTGGCACAGAGCAGTTCAATCAGAAACCAAAGAAGGGGATTCAGTTTCTGCAAGAGAAAGGCCTCCTCACCATCCCAATGGACAACACAGAGGTTGCTCAGTGGCTCCGAGAGAACCCTCGGCTGGACAAGAAGATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATTGACCTGTTGGAGAGCTTTGTGAGCACCTTCAGTTTTCAGGGTCTGCGACTGGACGAAGCCCTCCGCCTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCAGTCATCCAGAGGTTGCTGGAGGCATTCACAGAGCGTTGGATGAATTGTAATGGCTCCCCATTTGCCAATAGCGATGCCTGCTTTTCCCTGGCCTATGCTGTCATCATGCTTAATACTGACCAGCACAACCACAATGTTCGTAAACAGAATGCACCCATGACCCTGGAGGAGTTTCGCAAAAATCTGAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAGGACATGTACCATGCCATCAAGAATGAGGAAATTGTAATGCCTGAGGAGCAGACAGGCTTGGTTCGGGAGAACTATGTGTGGAATGTGCTGCTTCATCGAGGTGCCACCCCTGAGGGCATATTCCTGCGTGTGCCTACTGCCAGCTATGATCTTGACCTCTTCACCATGACCTGGGGCCCCACTATTGCTGCTCTCTCTTATGTCTTTGACAAAAGCCTTGAGGAGACAATCATCCAGAAAGCCATCTCAGGCTTCAGGAAGTGCGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTATGCAAATTCACAGCTCTCAGCAGTGAGTCTATTGAGAACCTGCCCAGTGTATTTGGAAGCAACCCTAAAGCCCATATTGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTGCGGGAGGGCTGGAAGAATATCATGGAGGCCATGCTGCAGCTCTTCCGAGCCCAACTACTGCCCAAGGCTATGATAGAGGTAGAAGATTTCGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAAGAGACACCATCAAACCGAGGAGAGTCAACAGTGCTGAGCTTTGTGAGCTGGCTAACACTGAGTGGTCCTGAGCAGTCTAGTGTTCGGGGCCCATCCACTGAAAACCAAGAGGCCAAGAGAGTGGCCTTAGAGTGTATAAAGCAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAGTCACTACAGGAGCTCATGAAGGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATGAGGAAGATGCTGCTTTCTGCCTAGAGATGCTGCTAAGGATTGTGTTGGAGAACAGGGATCGTGTGGGCTGTGTGTGGCAGACTGTTCGAGACCATCTATACCACCTCTGTGTTCAGGCACAAGATTTCTGCTTCCTTGTGGAGCGGGCAGTGGTGGGGTTGCTACGCCTGGCCATTCGGCTTCTCCGGAGAGAAGAGATCAGTGCTCAGGTGCTGCTCTCCCTGCGCATTTTGCTACTGATGAAGCCCAGTGTGCTATCCCGAGTCAGCCACCAGGTTGCGTATGGGCTCCATGAACTCCTGAAGACCAATGCAGCCAACATCCACTCAGGTGATGACTGGGCCACACTCTTCACACTGCTGGAGTGCATCGGCTCAGGTGTGAAGCCTCCAGCTGCTCTGCAGGCCACAGCCAGGGCAGATGCACCTGATGCCGGGGCCCAGTCAGATAGTGAGCTCCCATCCTACCATCAGAATGACGTGAGCCTGGATCGAGGGTACACTTCCGACTCAGAGGTCTACACTGACCATGGCAGGCCGGGCAAGATACACCGATCAGCCACAGATGCCGATGTGGTCAACAGTGGTTGGTTAGTGGTTGGGAAGGATGACGTTGATAACTCCAAGCCAGGGCCCAGCCGCCCAGGCCCTTCACCCCTGATCAATCAATACAGCCTAACAGTGGGACTGGATTTGGGGCCACACGACACTAAGTCTCTGCTTAAGTGTGTGGAATCGCTGTCCTTCATTGTGCGTGATGCTGCCCACATCACACCTGACAACTTTGAGCTCTGCGTCAAGACTCTCCGGATCTTTGTGGAGGCCAGTCTGAATGGCGGATGCAAGTCCCAGGAGAAACGTGGCAAGAGTCACAAATATGACAGCAAAGGGAACCGCTTCAAGAAGAAATCCAAAGAGGGATCAATGCTTCGCCGGCCTCGAACCTCCAGCCAACATGCCTCTCGGGGCGGGCAGAGTGATGATGATGAGGACGAAGGCGTGCCTGCCAGCTACCATACGGTGTCTTTACAGGTCAGTCAGGACTTGCTAGACCTGATGCACACCCTGCACACGCGGGCAGCCTCTATCTACAGCTCATGGGCGGAGGAGCAACGCCACCTGGAGACAGGTGGCCAGAAGATTGAAGCTGATTCTCGCACCCTCTGGGCCCACTGCTGGTGCCCTTTACTGCAGGGTATTGCCTGCCTGTGCTGCGATGCCCGGCGCCAGGTACGGATGCAGGCACTGACCTATCTGCAGCGAGCACTACTTGTACATGATCTGCAAAAGCTAGATGCCCTGGAATGGGAGTCCTGTTTTAACAAGGTGCTGTTTCCTCTACTTACCAAGCTCTTGGAGAACATCAGCCCTGCAGATGTGGGTGGGATGGAGGAGACCCGGATGAGGGCTTCCACATTGCTCTCTAAGGTCTTCCTGCAGCACCTGTCTCCACTGCTGTCACTCTCTACCTTTGCGGCCCTCTGGCTCACCATCTTGGACTTCATGGACAAGTACATGCACGCAGGCTCCAGCGACTTACTGTCAGAGGCGATCCCTGAGTCTCTGAAGAACATGCTTCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCACGGGGAGGCGGCCCCTCGGCCCTCTGGGAGATCACCTGGGAACGCATTGACTGTTTTCTCCCTCACCTACGAGATGAACTCTTCAAGCAGACCGTCATCCAGGACCCCATGCCCATGGAGCCTCAAGGCCAAAAGCCTCTCGCCTCAGCCCACCTGACTTCCGCTGCTGGCGACACTAGGACACCTGGCCATCCACCGCCCCCAGAGATTCCATCTGAGCTGGGGGCCTGTGACTTTGAGAAGCCCGAGAGCCCCCGAGCCGCCAGCAGCAGCTCCCCAGGATCACCAGTGGCCTCAAGCCCCAGCAGGCTGAGCCCCACCCCCGACGGGCCTCCACCCTTGGCTCAGCCCCCACTGATCCTGCAGCCCTTGGCCTCCCCACTGCAGGTGGGCGTGCCACCTATGACTCTGCCCATCATCCTCAACCCTGCGCTCATCGAGGCCACCTCACCAGTGCCCCTCCTGGCCACACCCCGCCCCACAGATCCCATACCCACCTCTGAGGTCAACTAA MAELRPSGAPGPTAPPAPGPTAPPAFASLFPPGLHAIYGECRRLYPDQPNPLQVTAIVKYWLGGPDPLDYVSMYRNVGSPSANIPEHWHYISFGLSDLYGDNRVHEFTGTDGPSGFGFELTFRLKRETGESAPPTWPAELMQGLARYVFQSELSEIEPNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHARFVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKSAEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKISPCLLNKLELSSGEQTKALNQLERVLLFKNLKLKMRAGGMSDSSKWKKQKRSPRPPRHMTKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQTTSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQEGTHVEKSQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPRGVRFTQSSQKEGTALVPYGLPCIRELFRFLISLTNPHDRHNSEVMIHMGLHLLTVALESAPVAQCQTLLGLIKDEMCRHLFQLLSIERLNLYAASLRVCFLLFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINYDCDYYCSNLFEELTKLLSKNAFPVSGQLYTTHLLSLDALLTVIDSTEAHCQAKVLNSLTQQEKKETARPSCEIVDGTREASNTERTASDGKAVGMASDIPGLHLPGGGRLPPEHGKSGCSDLEEAVDSGADKKFARKPPRFSCLLPDPRELIEIKNKKKLLITGTEQFNQKPKKGIQFLQEKGLLTIPMDNTEVAQWLRENPRLDKKMIGEFVSDRKNIDLLESFVSTFSFQGLRLDEALRLYLEAFRLPGEAPVIQRLLEAFTERWMNCNGSPFANSDACFSLAYAVIMLNTDQHNHNVRKQNAPMTLEEFRKNLKGVNGGKDFEQDILEDMYHAIKNEEIVMPEEQTGLVRENYVWNVLLHRGATPEGIFLRVPTASYDLDLFTMTWGPTIAALSYVFDKSLEETIIQKAISGFRKCAMISAHYGLSDVFDNLIISLCKFTALSSESIENLPSVFGSNPKAHIAAKTVFHLAHRHGDILREGWKNIMEAMLQLFRAQLLPKAMIEVEDFVDPNGKISLQREETPSNRGESTVLSFVSWLTLSGPEQSSVRGPSTENQEAKRVALECIKQCDPEKMITESKFLQLESLQELMKALVSVTPDEETYDEEDAAFCLEMLLRIVLENRDRVGCVWQTVRDHLYHLCVQAQDFCFLVERAVVGLLRLAIRLLRREEISAQVLLSLRILLLMKPSVLSRVSHQVAYGLHELLKTNAANIHSGDDWATLFTLLECIGSGVKPPAALQATARADAPDAGAQSDSELPSYHQNDVSLDRGYTSDSEVYTDHGRPGKIHRSATDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTVGLDLGPHDTKSLLKCVESLSFIVRDAAHITPDNFELCVKTLRIFVEASLNGGCKSQEKRGKSHKYDSKGNRFKKKSKEGSMLRRPRTSSQHASRGGQSDDDEDEGVPASYHTVSLQVSQDLLDLMHTLHTRAASIYSSWAEEQRHLETGGQKIEADSRTLWAHCWCPLLQGIACLCCDARRQVRMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLENISPADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHAGSSDLLSEAIPESLKNMLLVMDTAEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMPMEPQGQKPLASAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPSRLSPTPDGPPPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRPTDPIPTSEVN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Breast invasive carcinoma UTERUS,BREAST,BREAST no_match 104309863,104309863,104309863 TRUE,TRUE,TRUE 104111013,104111013,104111013 FALSE,FALSE,FALSE YES,YES,YES In-frame,In-frame,In-frame TRUE Breast,Breast BREAST,BREAST no_match 102550106,102550106 TRUE,TRUE 102351256,102351256 FALSE,FALSE TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 29425 MED1::CDK12 ENSG00000125686.12::ENSG00000167258.16 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 615 FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39434249:- chr17:37560538-37607525:- chr17:37590502:- CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39509705:+ chr17:37617739-37723812:+ chr17:37665958:+ chr17:39432781,chr17:39432553,chr17:39433028 chr17:39502321,chr17:39502391,chr17:39502503 NA NA chr17:37589034,chr17:37588806,chr17:37589281 chr17:37658574,chr17:37658644,chr17:37658756 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Med1|13-54|0.75^Med1|60-426|3.2e-56^DUF34_NIF3|60-147|1.5e-05 none ["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_INVERSION:-:+:[10225] 13 6 13 6 ONLY_REF_SPLICE YES_LDAS 0.1099 GT 1.9329 AG 1.9219 ENST00000394287.7 1-500 ENST00000447079.6 2610-4473 chr17|-|[1]39434249-39434320[2]|[1]39439165-39439193[0]|[2]39440386-39440518[2]|[1]39440623-39440677[1]|[0]39443550-39443628[0]|[2]39447798-39447904[1]|[0]39451038-39451062[0]<==>chr17|+|[2]39509705-39509761[1]|[2]39511529-39511630[1]|[2]39515731-39515808[1]|[2]39517440-39517556[1]|[2]39519956-39520087[1]|[2]39524674-39524885[0]|[1]39525864-39526316[0]|[1]39530604-39531316[2] atgaaagctcagggggaaaccgaggagtcagaaaagctgagtaagatgagttctctcctggaacggctccatgcaaaatttaaccaaaatagaccctggagtgaaaccattaagcttgtgcgtcaagtcatggagaagagggttgtgatgagttctggagggcatcaacatttggtcagctgtttggagacattgcagaaggctctcaaagtaacatctttaccagcaatgactgatcgtttggagtccatagcaagacagaatggactgggctctcatctcagtgccagtggcactgaatgttacatcacgtcagatatgttctatgtggaagtgcagttagatcctgcaggacagctttgtgatgtaaaagtggctcaccatggggagaatcctgtgagctgtccggagcttgtacagcagctaagggaaaaaaattttgatgaattttctaagcaccttaagggccttgttaatctgtataaccttccaggggacaaTGGGCAAATCAAACTAGCAGATTTTGGACTTGCTCGGCTCTATAACTCTGAAGAGAGTCGCCCTTACACAAACAAAGTCATTACTTTGTGGTACCGACCTCCAGAACTACTGCTAGGAGAGGAACGTTACACACCAGCCATAGATGTTTGGAGCTGTGGATGTATTCTTGGGGAACTATTCACAAAGAAGCCTATTTTTCAAGCCAATCTGGAACTGGCTCAGCTAGAACTGATCAGCCGACTTTGTGGTAGCCCTTGTCCAGCTGTGTGGCCTGATGTTATCAAACTGCCCTACTTCAACACCATGAAACCGAAGAAGCAATATCGAAGGCGTCTACGAGAAGAATTCTCTTTCATTCCTTCTGCAGCACTTGATTTATTGGACCACATGCTGACACTAGATCCTAGTAAGCGGTGCACAGCTGAACAGACCCTACAGAGCGACTTCCTTAAAGATGTCGAACTCAGCAAAATGGCTCCTCCAGACCTCCCCCACTGGCAGGATTGCCATGAGTTGTGGAGTAAGAAACGGCGACGTCAGCGACAAAGTGGTGTTGTAGTCGAAGAGCCACCTCCATCCAAAACTTCTCGAAAAGAAACTACCTCAGGGACAAGTACTGAGCCTGTGAAGAACAGCAGCCCAGCACCACCTCAGCCTGCTCCTGGCAAGGTGGAGTCTGGGGCTGGGGATGCAATAGGCCTTGCTGACATCACACAACAGCTGAATCAAAGTGAATTGGCAGTGTTATTAAACCTGCTGCAGAGCCAAACCGACCTGAGCATCCCTCAAATGGCACAGCTGCTTAACATCCACTCCAACCCAGAGATGCAGCAGCAGCTGGAAGCCCTGAACCAATCCATCAGTGCCCTGACGGAAGCTACTTCCCAGCAGCAGGACTCAGAGACCATGGCCCCAGAGGAGTCTTTGAAGGAAGCACCCTCTGCCCCAGTGATCCTGCCTTCAGCAGAACAGACGACCCTTGAAGCTTCAAGCACACCAGCTGACATGCAGAATATATTGGCAGTTCTCTTGAGTCAGCTGATGAAAACCCAAGAGCCAGCAGGCAGTCTGGAGGAAAACAACAGTGACAAGAACAGTGGGCCACAGGGGCCCCGAAGAACTCCCACAATGCCACAGGAGGAGGCAGCAGCATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAGGGTCAGTGCAGTTTCCAGGGGACCAGGACCTCCGTTTTGCCAGGGTCCCCTTAGCGTTACACCCGGTGGTCGGGCAACCATTCCTGAAGGCTGAGGGAAGCAGCAATTCTGTGGTACATGCAGAGACCAAATTGCAAAACTATGGGGAGCTGGGGCCAGGAACCACTGGGGCCAGCAGCTCAGGAGCAGGCCTTCACTGGGGGGGCCCAACTCAGTCTTCTGCTTATGGAAAACTCTATCGGGGGCCTACAAGAGTCCCACCAAGAGGGGGAAGAGGGAGAGGAGTTCCTTACTAA MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVEEPPPSKTSRKETTSGTSTEPVKNSSPAPPQPAPGKVESGAGDAIGLADITQQLNQSELAVLLNLLQSQTDLSIPQMAQLLNIHSNPEMQQQLEALNQSISALTEATSQQQDSETMAPEESLKEAPSAPVILPSAEQTTLEASSTPADMQNILAVLLSQLMKTQEPAGSLEENNSDKNSGPQGPRRTPTMPQEEAAACPPHILPPEKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRPMEYSTRPRPNRTYGNTDGPETGFSAIDTDERNSGPALTESLVQTLVKNRTFSGSLSHLGESSSYQGTGSVQFPGDQDLRFARVPLALHPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPGTTGASSSGAGLHWGGPTQSSAYGKLYRGPTRVPPRGGRGRGVPY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Stomach,Lung exact TRUE Lung adenocarcinoma LUNG no_match 37607291 FALSE 37627132 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 29427 OXCT1::LINC02117 ENSG00000083720.13::ENSG00000248539.1 NCIN87 SRR8615495 SRR8670703 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA OXCT1 ENSG00000083720.13 protein_coding - - chr5:41730065-41870425:- chr5:41794003:- chr5:41730167-41870527:- chr5:41794105:- LINC02117 ENSG00000248539.1 lncRNA - - chr5:37899363-37920869:- chr5:37899668:- chr5:37899465-37920971:- chr5:37899770:- chr5:41776592,chr5:41776600 chr5:37907608,chr5:37907613 NA NA chr5:41776694,chr5:41776702 chr5:37907710,chr5:37907715 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 10 11 10 ONLY_REF_SPLICE YES_LDAS 0.1216 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29432 ABCB7::ZDHHC15 ENSG00000131269.19::ENSG00000102383.14 SKNAS SRR8615502 SRR8670773 AUTONOMIC_GANGLIA neuroblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ABCB7 ENSG00000131269.19 protein_coding - - chrX:75051048-75156732:- chrX:75114621:- chrX:74270883-74376567:- chrX:74334456:- ZDHHC15 ENSG00000102383.14 protein_coding - - chrX:75368427-75523502:- chrX:75379186:- chrX:74588262-74743337:- chrX:74599021:- chrX:75113029 chrX:75380576 NA NA chrX:74332864 chrX:74600411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ABC_membrane-PARTIAL|153-261~|6.1e-41^DUF697|169-236|0.00039 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.21Mb] 8 4 8 2.67 INCL_NON_REF_SPLICE NO_LDAS 0.1015 GT 1.3383 AG 1.8323 ENST00000645829.3 1-261 ENST00000373367.8 980-1014 chrX|-|[2]75114621-75114632[0]|[2]75114754-75114834[0]|[2]75156105-75156272[0]<==>chrX|-|[2]75379152-75379186[1] atggcgctgctcgcgatgcattcttggcgctgggcggccgcggcggctgctttcgaaaagcgccggcactccgcgattctgatccggcctttagtctctgttagcggctcaggtccgcagtggaggccacatcaactcggcgccttgggaaccgctcgagcctaccagcagattccagagtcattaaaaagtatcacatggcagagattgggaaaaggcaattcaggacagttcttagatgctgcaaagatgaataagaagGCTCATCATCTCTTGCTGTGGAAACGGAAACATAG MALLAMHSWRWAAAAAAFEKRRHSAILIRPLVSVSGSGPQWRPHQLGALGTARAYQQIPESLKSITWQRLGKGNSGQFLDAAKMNKKAHHLLLWKRKH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29434 ARRDC1::EHMT1 ENSG00000197070.14::ENSG00000181090.21 SW48 SRR8615504 SRR8670708 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARRDC1 ENSG00000197070.14 protein_coding + + chr9:137605685-137615360:+ chr9:137605835:+ chr9:140500137-140509812:+ chr9:140500287:+ EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137728349:+ chr9:140513444-140764468:+ chr9:140622801:+ chr9:137610905,chr9:137610904 chr9:137718224,chr9:137718215 NA NA chr9:140505357,chr9:140505356 chr9:140612676,chr9:140612667 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Arrestin_N-PARTIAL|7-118~|4.1e-21^Arrestin_C-PARTIAL|9-118~|8.5e-07^LDB19-PARTIAL|78-118~|6.6e-06 Ank_2|743-836|2.4e-20^Ank_3|743-765|5.2^Ank|749-766|1.7^Ank_5|770-798|0.0025^Ank|773-801|8.7e-10^Ank_3|773-800|5.4e-07^Ank_4|774-826|4e-17^Ank_5|792-841|2e-08^Ank|806-836|3.6e-09^Ank_3|806-830|7.5e-07^Ank_2|834-903|2.8e-21^Ank_5|836-878|8.8e-14^Ank|839-871|1.2e-11^Ank_3|839-867|1.8e-07^Ank_4|840-893|3.3e-16^Ank|873-904|1.7e-10^Ank_3|873-901|9.7e-07^Ank_4|879-926|5.9e-10^Ank_5|882-906|0.0017^Ank_5|892-946|3.2e-08^Ank|907-936|5.7e-07^Ank_4|909-959|2.1e-11^Ank_2|910-985|1.8e-14^Ank_3|910-933|0.00031^Ank_5|925-978|2.2e-10^Ank|938-970|1.5e-08^Ank_3|938-964|1.2e-05^Ank_4|940-984|3.9e-10^Ank_3|971-985|0.72^Ank|972-982|0.17^Pre-SET|1015-1118|5.9e-20^SET|1105-1135|0.4^SET|1137-1243|4e-29^Pre-SET|1253-1265|0.59 ["EHMT1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.00Mb];NEIGHBORS[3603] 10 3 10 3 ONLY_REF_SPLICE YES_LDAS 0.2574 GT 1.7819 AG 1.8892 ENST00000371421.9 1-118 ENST00000460843.6 643-3897 chr9|+|[0]137605718-137605835[0]<==>chr9|+|[0]137728349-137728529[0]|[1]137743371-137743528[2]|[0]137743902-137744090[2]|[0]137752331-137752408[2]|[0]137754171-137754291[0]|[1]137757880-137758011[0]|[1]137762675-137762820[2]|[0]137775109-137775252[2]|[0]137776618-137776844[1]|[2]137777882-137778055[1]|[2]137779635-137779717[0]|[1]137782291-137782397[2]|[0]137790848-137790970[2]|[0]137798813-137798914[2]|[0]137800880-137800984[2]|[0]137811461-137811615[1]|[2]137813006-137813173[1]|[2]137813386-137813530[2]|[0]137814431-137814508[2]|[0]137815947-137816062[1]|[2]137817439-137817525[1]|[2]137818060-137818138[2]|[0]137834349-137834524[1]|[2]137834773-137834953[2] atggggcgagtgcagctcttcgagatcagcctgagccacggccgcgtcgtctacagccccggggagccgttggctgggaccgtgcgcgtgcgcctgggggcaccgctgccgttccgagCATGCAGCCAGTAAAGATCCCAGAGAAGTTCGAGAAGCTAGAGATCATAAGGAACCAAAAGAGGAGATCAACAAAAACATTTCTGACTTTGGACGACAGCAGCTTTTACCCCCCTTCCCATCCCTTCATCAGTCGCTACCTCAGAACCAGTGCTACATGGCCACCACAAAATCACAGACAGCTTGCTTGCCTTTTGTTTTAGCAGCTGCAGTATCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCCTGGTTCCTAAGAAAAAGACCAAAGTATTAAAACAGAGGACGGTGATTGAGATGTTTAAGAGCATAACTCATTCCACTGTGGGTTCCAAGGGGGAGAAGGACCTGGGCGCCAGCAGCCTGCACGTGAATGGGGAGAGCCTGGAGATGGACTCGGATGAGGACGACTCAGAGGAGCTCGAGGAGGACGACGGCCATGGTGCAGAGCAGGCGGCCGCGTTCCCCACAGAGGACAGCAGGACTTCCAAGGAGAGCATGTCGGAGGCTGATCGCGCCCAGAAGATGGACGGGGAGTCCGAGGAGGAGCAGGAGTCCGTGGACACCGGGGAGGAGGAGGAAGGCGGTGACGAGTCTGACCTGAGTTCGGAATCCAGCATTAAGAAGAAATTTCTCAAGAGGAAAGGAAAGACCGACAGTCCCTGGATCAAGCCAGCCAGGAAAAGGAGGCGGAGAAGTAGAAAGAAGCCCAGCGGTGCCCTCGGTTCTGAGTCGTATAAGTCATCTGCAGGAAGCGCTGAGCAGACGGCACCAGGAGACAGCACAGGGTACATGGAAGTTTCTCTGGACTCCCTGGATCTCCGAGTCAAAGGAATTCTGTCTTCACAAGCAGAAGGGTTGGCCAACGGTCCAGATGTGCTGGAGACAGACGGCCTCCAGGAAGTGCCTCTCTGCAGCTGCCGGATGGAAACACCGAAGAGTCGAGAGATCACCACACTGGCCAACAACCAGTGCATGGCTACAGAGAGCGTGGACCATGAATTGGGCCGGTGCACAAACAGCGTGGTCAAGTATGAGCTGATGCGCCCCTCCAACAAGGCCCCGCTCCTCGTGCTGTGTGAAGACCACCGGGGCCGCATGGTGAAGCACCAGTGCTGTCCTGGCTGTGGCTACTTCTGCACAGCGGGTAATTTTATGGAGTGTCAGCCCGAGAGCAGCATCTCTCACCGTTTCCACAAAGACTGTGCCTCTCGAGTCAATAACGCCAGCTATTGTCCCCACTGTGGGGAGGAGAGCTCCAAGGCCAAAGAGGTGACGATAGCTAAAGCAGACACCACCTCGACCGTGACACCAGTCCCCGGGCAGGAGAAGGGCTCGGCCCTGGAGGGCAGGGCCGACACCACAACGGGCAGTGCTGCCGGGCCACCACTCTCGGAGGACGACAAGCTGCAGGGTGCAGCCTCCCACGTGCCCGAGGGCTTTGATCCAACGGGACCTGCTGGGCTTGGGAGGCCAACTCCCGGCCTTTCCCAGGGACCAGGGAAGGAAACCTTGGAGAGCGCTCTCATCGCCCTCGACTCGGAAAAACCCAAGAAGCTTCGCTTCCACCCAAAGCAGCTGTACTTCTCCGCCAGGCAAGGGGAGCTTCAGAAGGTGCTCCTCATGCTGGTGGACGGAATTGACCCCAACTTCAAAATGGAGCACCAGAATAAGCGCTCTCCACTGCACGCCGCGGCAGAGGCTGGACACGTGGACATCTGCCACATGCTGGTTCAGGCGGGCGCTAATATTGACACCTGCTCAGAAGACCAGAGGACCCCGTTGATGGAAGCAGCCGAAAACAACCATCTGGAAGCAGTGAAGTACCTCATCAAGGCTGGGGCCCTGGTGGATCCCAAGGACGCAGAGGGCTCTACGTGTTTGCACCTGGCTGCCAAGAAAGGCCACTACGAAGTGGTCCAGTACCTGCTTTCAAATGGACAGATGGACGTCAACTGTCAGGATGACGGAGGCTGGACACCCATGATCTGGGCCACAGAGTACAAGCACGTGGACCTCGTGAAGCTGCTGCTGTCCAAGGGCTCTGACATCAACATCCGAGACAACGAGGAGAACATTTGCCTGCACTGGGCGGCGTTCTCCGGCTGCGTGGACATAGCCGAGATCCTGCTGGCTGCCAAGTGCGACCTCCACGCCGTGAACATCCACGGAGACTCGCCACTGCACATTGCCGCCCGGGAGAACCGCTACGACTGTGTCGTCCTCTTTCTTTCTCGGGATTCAGATGTCACCTTAAAGAACAAGGAAGGAGAGACGCCCCTGCAGTGTGCGAGCCTCAACTCTCAGGTGTGGAGCGCTCTGCAGATGAGCAAGGCTCTGCAGGACTCGGCCCCCGACAGGCCCAGCCCCGTGGAGAGGATAGTGAGCAGGGACATCGCTCGAGGCTACGAGCGCATCCCCATCCCCTGTGTCAACGCCGTGGACAGCGAGCCATGCCCCAGCAACTACAAGTACGTCTCTCAGAACTGCGTGACGTCCCCCATGAACATCGACAGAAATATCACTCATCTGCAGTACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGCGGCCAGCTCAGCATGCGCTGCTGGTACGACAAGGATGGCCGGCTCCTGCCAGAGTTCAACATGGCGGAGCCTCCCTTGATCTTCGAATGCAACCACGCGTGCTCCTGCTGGAGGAACTGCCGAAATCGCGTCGTACAGAATGGTCTCAGGGCAAGGCTGCAGCTCTACCGGACGCGGGACATGGGCTGGGGCGTGCGGTCCCTGCAGGACATCCCACCAGGCACCTTTGTCTGCGAGTATGTTGGGGAGCTGATTTCAGACTCAGAAGCCGACGTTCGAGAGGAAGATTCTTACCTCTTTGATCTCGACAATAAGGACGGGGAGGTTTACTGCATCGACGCGCGGTTCTACGGGAACGTCAGCCGGTTCATCAACCACCACTGCGAGCCCAACCTGGTGCCCGTGCGCGTGTTCATGGCCCACCAGGACCTGCGGTTCCCCCGGATCGCCTTCTTCAGCACCCGCCTGATCGAGGCCGGCGAGCAGCTCGGGTTTGACTATGGAGAGCGCTTCTGGGACATCAAAGGCAAGCTCTTCAGCTGCCGCTGCGGCTCCCCCAAGTGCCGGCACTCGAGCGCGGCCCTGGCCCAGCGTCAGGCCAGCGCGGCCCAGGAGGCCCAGGAGGACGGCTTGCCCGACACCAGCTCCGCGGCTGCCGCCGACCCCCTATGA MGRVQLFEISLSHGRVVYSPGEPLAGTVRVRLGAPLPFRACSQ*RSQRSSRS*RS*GTKRGDQQKHF*LWTTAAFTPLPIPSSVATSEPVLHGHHKITDSLLAFCFSSCSISEEKTKNGNL*PGS*EKDQSIKTEDGD*DV*EHNSFHCGFQGGEGPGRQQPAREWGEPGDGLG*GRLRGARGGRRPWCRAGGRVPHRGQQDFQGEHVGG*SRPEDGRGVRGGAGVRGHRGGGGRR*RV*PEFGIQH*EEISQEERKDRQSLDQASQEKEAEK*KEAQRCPRF*VV*VICRKR*ADGTRRQHRVHGSFSGLPGSPSQRNSVFTSRRVGQRSRCAGDRRPPGSASLQLPDGNTEESRDHHTGQQPVHGYRERGP*IGPVHKQRGQV*ADAPLQQGPAPRAV*RPPGPHGEAPVLSWLWLLLHSG*FYGVSAREQHLSPFPQRLCLSSQ*RQLLSPLWGGELQGQRGDDS*SRHHLDRDTSPRAGEGLGPGGQGRHHNGQCCRATTLGGRQAAGCSLPRARGL*SNGTCWAWEANSRPFPGTREGNLGERSHRPRLGKTQEASLPPKAAVLLRQARGASEGAPHAGGRN*PQLQNGAPE*ALSTARRGRGWTRGHLPHAGSGGR*Y*HLLRRPEDPVDGSSRKQPSGSSEVPHQGWGPGGSQGRRGLYVFAPGCQERPLRSGPVPAFKWTDGRQLSG*RRLDTHDLGHRVQARGPREAAAVQGL*HQHPRQRGEHLPALGGVLRLRGHSRDPAGCQVRPPRREHPRRLATAHCRPGEPLRLCRPLSFSGFRCHLKEQGRRDAPAVCEPQLSGVERSADEQGSAGLGPRQAQPRGEDSEQGHRSRLRAHPHPLCQRRGQRAMPQQLQVRLSELRDVPHEHRQKYHSSAVLRVHRRLLLQQLHVRPAQHALLVRQGWPAPARVQHGGASLDLRMQPRVLLLEELPKSRRTEWSQGKAAALPDAGHGLGRAVPAGHPTRHLCLRVCWGADFRLRSRRSRGRFLPL*SRQ*GRGGLLHRRAVLRERQPVHQPPLRAQPGARARVHGPPGPAVPPDRLLQHPPDRGRRAARV*LWRALLGHQRQALQLPLRLPQVPALERGPGPASGQRGPGGPGGRLARHQLRGCRRPPM FALSE FALSE NA NA TRUE hsa-mir-602 chr9:137838419-137838516:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29441 TUFT1::CTXND2 ENSG00000143367.17::ENSG00000283324.1 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TUFT1 ENSG00000143367.17 protein_coding + + chr1:151540305-151583583:+ chr1:151540426:+ chr1:151512781-151556059:+ chr1:151512902:+ CTXND2 ENSG00000283324.1 protein_coding + + chr1:150887136-150913292:+ chr1:150912242:+ chr1:150859612-150885768:+ chr1:150884718:+ chr1:151546238,chr1:151546115,chr1:151546237 chr1:150908085,chr1:150907703,chr1:150908081 NA NA chr1:151518714,chr1:151518591,chr1:151518713 chr1:150880561,chr1:150880179,chr1:150880557 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 850 234 850 234 ONLY_REF_SPLICE YES_LDAS 15.6173 GT 1.4566 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29442 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 618 TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237756187:+ chr2:238536230-238722325:+ chr2:238664830:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553566:+ chr2:238394071-238463965:+ chr2:238462209:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ATG16|27-81|0.1^Seryl_tRNA_N|30-68|0.34^TPR_MLP1_2|31-69|0.19^LRRFIP|33-117|9.6e-19^LRRFIP|179-214|0.069^LRRFIP|218-378|3e-50^TPR_MLP1_2|261-353|7.3e-07^Seryl_tRNA_N|264-293|0.081^DASH_Dam1|266-295|0.00086^ATG16|272-373|0.032^BMT5-like|290-394|0.00011^Surfac_D-trimer|297-303|0.9^Seryl_tRNA_N|301-344|0.18^TPR_MLP1_2|357-440|0.039^Seryl_tRNA_N|361-440|6.6e-07^DASH_Dam1|361-384|0.59^Surfac_D-trimer|367-383|0.29^ATG16|371-438|0.16^LRRFIP|404-565|4.6e-39^ATG16|485-517|0.099^DASH_Dam1|490-508|4.6^Seryl_tRNA_N|495-515|0.14^TPR_MLP1_2|495-513|0.4^Surfac_D-trimer|500-513|1.2^ATG16|544-631|5.3e-06^Seryl_tRNA_N|550-596|7^TPR_MLP1_2|556-629|0.02^Surfac_D-trimer|561-583|0.00016^DASH_Dam1|561-574|1.5^BMT5-like|574-593|1.2^LRRFIP|585-626|0.5^Seryl_tRNA_N|592-633|0.46 none ["LRRFIP1:Oncogene"];["Klijn_CellLines","DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.07Mb];LOCAL_REARRANGEMENT:+:[72258] 251 131 251 106.41 ONLY_REF_SPLICE YES_LDAS 5.1493 GT 1.8323 AG 1.9656 ENST00000308482.14 1-1131 ENST00000338530.8 1693-1719 chr2|+|[0]237627645-237627740[2]|[0]237708544-237708630[2]|[0]237714259-237714276[2]|[0]237717762-237717809[2]|[0]237719523-237719567[2]|[0]237720772-237720822[2]|[0]237723548-237723586[2]|[0]237727876-237727935[2]|[0]237733774-237733818[2]|[0]237735268-237735333[2]|[0]237739232-237739309[2]|[0]237748364-237748399[2]|[0]237749199-237749324[2]|[0]237751200-237751271[2]|[0]237753309-237753479[2]|[0]237756095-237756187[2]<==>chr2|+|[0]237553566-237553592[2] atggacatgggcacccagggatcggggcgcaagcggctccccaaccgggagcggctcacggcggaggacgacgcgctcaaccagatcgcgcgggaggcggaagcccggctcgctgcaaaacgggcggcccgcgcggaggctcgcgagatccgcatgaaggagctggagcggcagcagaaggagatctatcaggtccaaaagaaatattatgggctggatacaaaatggggtgacatcgagcagtggatggaagacagtgagcgctactctcgtagatccagaagaaacacatcggcttctgatgaagacgagcgcatgtcagtgggtagtcgtggaagcctgaggtcgcagcctgacttggagtatgggggtccttacgcctggacaaatggttatgatggagaattgtatggatcacagtccctgaatagaagatctggcaggccctcctgtctgtacagcgctgcccggccttcggggagttaccgggcgtctgtgttggatgaaggcagcttcggtgggacccgacggggcagcacctccggctcccgtgctccctcggagtacagcggccacctcaactccagctcccgcgcctcctccagggccagctcggcccgggccagccctgtggtagaagagagaccagaaaaagattttactgagaaggggtctcgtaacatgccgggcctgtctgcagccacgctggcctctctgggtgggacttcctctcggagaggcagcggagacacctccatctccatcgacaccgaggcatccatcagggaaatcaaggaactcaatgagttaaaggaccagattcaggatgtagaaggcaaatacatgcagggattgaaagagatgaaggactctctagcagaagttgaagagaaatataagaaggctatggtttccaatgctcagctagacaatgaaaagacaaacttcatgtaccaggttgataccctaaaagatatgttgctggagcttgaagaacagctggctgaatctaggcggcagtacgaagagaaaaacaaagaatttgaaagggaaaaacacgcccacagtatactgcaatttcagtttgctgaagtcaaggaggccctgaagcaaagagaggaaatgctcgagAAACCTGTGGTGGCCCACCAGTCCTAA MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEIYQVQKKYYGLDTKWGDIEQWMEDSERYSRRSRRNTSASDEDERMSVGSRGSLRSQPDLEYGGPYAWTNGYDGELYGSQSLNRRSGRPSCLYSAARPSGSYRASVLDEGSFGGTRRGSTSGSRAPSEYSGHLNSSSRASSRASSARASPVVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKELNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEKPVVAHQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29443 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 616 TRUE 1132 TRUE 420 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27495680:+ chr12:27599669-27655118:+ chr12:27648613:+ chr12:27527208,chr12:27527208 chr12:27493125,chr12:27493122 NA NA chr12:27680141,chr12:27680141 chr12:27646058,chr12:27646055 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPFIBP1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.02Mb];LOCAL_REARRANGEMENT:+:[21246] 163 76 163 57.62 ONLY_REF_SPLICE YES_LDAS 3.1785 GT 1.4256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29444 MTCH1::MIDEAS-AS1 ENSG00000137409.21::ENSG00000259065.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1135 TRUE 423 MTCH1 ENSG00000137409.21 protein_coding - - chr6:36965807-36986298:- chr6:36985853:- chr6:36933583-36954074:- chr6:36953629:- MIDEAS-AS1 ENSG00000259065.3 lncRNA + + chr14:73787355-73803300:+ chr14:73789027:+ chr14:74254058-74270003:+ chr14:74255730:+ chr6:36981658,chr6:36981664 chr14:73788147,chr14:73788141 NA NA chr6:36949434,chr6:36949440 chr14:74254850,chr14:74254844 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 149 55 149 50.84 ONLY_REF_SPLICE YES_LDAS 2.8792 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29445 UBE2G1::ZZEF1 ENSG00000132388.13::ENSG00000074755.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 620 FALSE NA FALSE NA UBE2G1 ENSG00000132388.13 protein_coding - - chr17:4269259-4366675:- chr17:4307021:- chr17:4172554-4269970:- chr17:4210316:- ZZEF1 ENSG00000074755.15 protein_coding - - chr17:4004445-4143030:- chr17:4009757:- chr17:3907739-4046324:- chr17:3913051:- chr17:4305497 chr17:4011845 NA NA chr17:4208792 chr17:3915139 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UQ_con|10-49|2.4e-10 none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.13Mb] 127 53 127 53 ONLY_REF_SPLICE YES_LDAS 2.5933 GT 1.8256 AG 1.9329 ENST00000574633.5 1-149 ENST00000381638.7 8580-8886 chr17|-|[1]4307021-4307123[1]|[0]4366271-4366316[0]<==>chr17|-|[2]4006890-4006970[0]|[2]4008883-4008954[0]|[2]4009604-4009757[2] atgacggagctgcagtcggcactgctactgcgaagacagctggcagaactcaacaaaaatccagtggaaggcttttctgcaggtttaatagatgacaatgatctctaccgatgggaagtccttattattggccctccagatacactttaTGACCTGTGTGACCTTGCGCTGTTGAAGCCCCTGTGGCAGCTCTTTACCCACATGGAGTACGGCCTGTTTGAGGACGTGACGCAGCCCGGCATCCTCCTTCCCCTGCATCGTGCCCTCACTGAGCTCTTCTTCGTCACCGAGAACCGTGCCCAGGAGCTTGGCGTGCTGCAGGATTACCTGCTGGCCCTAACCACGGACGACCACCTTCTCCGCTGTGCGGCACAGGCTCTGCAGAACATTGCTGCCATCAGCCTGGCCATCAACTACCCAAACAAGGCCACCCGCCTCTGGAATGTGGAGTGTTAG MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYDLCDLALLKPLWQLFTHMEYGLFEDVTQPGILLPLHRALTELFFVTENRAQELGVLQDYLLALTTDDHLLRCAAQALQNIAAISLAINYPNKATRLWNVEC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29446 SPINT1::HIF1A ENSG00000166145.15::ENSG00000100644.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 621 TRUE 1136 TRUE 424 SPINT1 ENSG00000166145.15 protein_coding + + chr15:40844018-40858207:+ chr15:40845029:+ chr15:41136216-41150405:+ chr15:41137227:+ HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61746934:+ chr14:62162231-62214977:+ chr14:62213652:+ chr15:40852646,chr15:40852852,chr15:40852644,chr15:40852645 chr14:61745369,chr14:61745405,chr14:61745369,chr14:61745365 NA NA chr15:41144844,chr15:41145050,chr15:41144842,chr15:41144843 chr14:62212087,chr14:62212123,chr14:62212087,chr14:62212083 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF5699|74-89|0.00011^DUF5699|102-112|1.2^MANEC|110-199|9.1e-34^Kunitz_BPTI|291-311|8.8e-07 none ["SPINT1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr14] 76 56 76 37.01 ONLY_REF_SPLICE YES_LDAS 1.6281 GT 1.8892 AG 1.9086 ENST00000568823.5 1-660 ENST00000539097.2 2402-2553 chr15|+|[1]40844067-40844186[0]|[1]40844490-40845029[0]<==>chr14|+|[1]61746934-61747085[2] gggagaaggcggccgagccccagctctccgagcaccgggtcggaagccgcgacccgagccgcgcaggaagctgggaccggaacctcggcggacccggccccacccaactcacctgcgcaggtcaccagcaccctcggaacccagaggcccgcgctctgaaggtgacccccctggggaggaaggcgatggcccctgcgaggacgatggcccgcgcccgcctcgccccggccggcatccctgccgtcgccttgtggcttctgtgcacgctcggcctccagggcacccaggccgggccaccgcccgcgccccctgggctgcccgcgggagccgactgcctgaacagctttaccgccggggtgcctggcttcgtgctggacaccaacgcctcggtcagcaacggagctaccttcctggagtcccccaccgtgcgccggggctgggactgcgtgcgcgcctgctgcaccacccagaactgcaacttggcgctagtggagctgcagcccgaccgcggggaggacgccatcgccgcctgcttcctcatcaactgcctctacgagcagaacttcgtgtgcaagttcgcgcccagggagggcttcatcaactacctcacgagggaagtgtaccgctcctaccgccagctgcggacccagggctttggagATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAGTTAACTGA EKAAEPQLSEHRVGSRDPSRAGSWDRNLGGPGPTQLTCAGHQHPRNPEARALKVTPLGRKAMAPARTMARARLAPAGIPAVALWLLCTLGLQGTQAGPPPAPPGLPAGADCLNSFTAGVPGFVLDTNASVSNGATFLESPTVRRGWDCVRACCTTQNCNLALVELQPDRGEDAIAACFLINCLYEQNFVCKFAPREGFINYLTREVYRSYRQLRTQGFGDLACRLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense 29447 FBXO42::PI4K2B ENSG00000037637.11::ENSG00000038210.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 629 FALSE NA FALSE NA FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16294783:- chr1:16573335-16678975:- chr1:16621278:- PI4K2B ENSG00000038210.14 protein_coding + + chr4:25160663-25279204:+ chr4:25252321:+ chr4:25162285-25280826:+ chr4:25253943:+ chr1:16262754,chr1:16262756 chr4:25246039,chr4:25246037 NA NA chr1:16589249,chr1:16589251 chr4:25247661,chr4:25247659 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame F-box-like|48-82|2.9e-12^F-box|48-84|2.9e-11^F-box_5|48-81|6.8e-09^Kelch_3|109-127|0.2^Kelch_5|117-158|5.7e-11^Kelch_4|119-166|1.1e-10^Kelch_2|119-162|5e-05^Kelch_6|122-162|5e-06^Kelch_3|130-182|1.3e-12^Kelch_1|131-162|9.8e-07^Kelch_5|170-196|0.001^Kelch_1|174-222|0.00027^Kelch_6|176-220|0.00027^Kelch_2|177-222|0.046^Kelch_4|178-231|7.1e-05^Kelch_3|184-240|7.7e-09^Kelch_5|229-268|1.7e-11^Kelch_2|231-274|4.2e-11^Kelch_1|232-272|3.5e-11^Kelch_4|233-272|2e-08^Kelch_6|234-272|2.2e-06^Kelch_3|242-283|1.2e-09^Kelch_5|286-319|0.0072^Kelch_6|287-320|0.057^Kelch_4|288-317|1e-06^Kelch_3|295-314|0.17^Kelch_1|295-315|0.056^Kelch_2|296-322|0.36^Kelch_2|341-357|0.3 PI3_PI4_kinase-PARTIAL|~269-425|1e-51 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr4] 59 35 59 35 ONLY_REF_SPLICE YES_LDAS 1.3542 GT 1.9329 AG 1.7968 ENST00000375592.8 1-502 ENST00000264864.8 269-1446 chr1|-|[0]16294783-16294917[1]|[0]16305803-16305919[1]|[0]16315169-16315418[0]<==>chr4|+|[1]25252321-25252475[2]|[0]25255065-25255265[2]|[0]25256543-25256674[2]|[0]25259037-25259190[0]|[1]25260524-25260591[2]|[0]25263750-25263849[0]|[1]25268443-25268576[2]|[0]25269144-25269203[2]|[0]25277014-25277187[2] atggccagctcctcggacagtgaagatgacagtttcatggctgtggaccaggaagaaactgtgctggaagggacaatggatcaagatgaggagccccacccagtattggaggctgaggagactagacataataggtccatgtcggagctgccagaagaggttttggagtatatcctgtcctttctctcaccgtatcaggaacacaaaactgcggcccttgtctgcaaacagtggtatcgacttatcaaaggtgtagcccatcagtgttatcatggtttcatgaaggctgtccaggaaggaaacattcagtgggagagccgtacctatccttatcctggaaccccaatcactcagcgcttctcgcacagtgcatgctattatgatgctaatcagtctatgtatgtgtttggaggctgtacccagagcagctgcaatgctgctttcaatgacctctggagacttgacctaaacagcaaagagtggatccgacctttggcttcagTAACTATTGGTACTTCAGAGATGAATGCATTCTTGGATGACCCAGAATTTGCCGATATTATGCTGAGAGCAGAGCAAGCAATAGAAGTTGGAATTTTTCCAGAAAGAATCTCTCAAGGTTCAAGTGGAAGTTACTTTGTGAAGGATCCTAAGAGGAAAATTATTGGTGTGTTTAAACCCAAATCAGAAGAGCCTTATGGTCAACTCAATCCAAAATGGACCAAATATGTCCATAAGGTCTGCTGCCCTTGCTGCTTTGGCCGAGGCTGCCTGATTCCTAATCAGGGGTACCTTTCCGAAGCGGGTGCCTATCTTGTGGACAACAAGCTTCATCTGAGCATTGTACCTAAAACAAAGGTGGTTTGGCTTGTCAGTGAGACATTTAACTATAATGCGATTGACCGTGCAAAATCAAGAGGCAAAAAGTATGCTTTAGAAAAAGTGCCAAAAGTGGGTAGAAAGTTTCATAGGATAGGACTCCCTCCTAAGATTGGTTCCTTTCAGTTATTTGTTGAAGGTTACAAGGAGGCTGAATATTGGCTTAGGAAATTTGAAGCTGACCCTTTGCCTGAGAATATTAGAAAACAATTTCAGTCACAATTTGAAAGATTAGTTATTTTGGATTACATCATCAGAAATACAGACAGGGGCAATGATAATTGGTTAGTCAGATACGAAAAGCAGAAATGTGAAAAGGAAATTGACCATAAGGAATCAAAATGGATTGATGATGAAGAATTCCTTATTAAAATAGCTGCAATTGATAATGGTCTAGCATTTCCTTTTAAACATCCTGATGAATGGAGAGCATATCCATTTCACTGGGCTTGGCTTCCTCAAGCAAAAGTTCCCTTTTCTGAAGAAATAAGAAATTTGATTCTACCATATATTTCTGACATGAACTTTGTGCAAGATTTATGTGAAGATCTCTATGAACTTTTTAAGACTGACAAAGGATTTGACAAAGCCACTTTTGAAAGTCAGATGTCTGTGATGAGGGGTCAGATCTTAAACCTTACTCAGGCATTGAGAGACGGGAAGAGTCCTTTCCAGCTAGTACAGATACCTTGTGTGATTGTGGAACGCAGTCAAGGTGGAAGTCAGGGTCGGATTGTCCACCTGAGCAATTCCTTTACCCAGACTGTCAATTGCAGGAAGCCATTTTTTTCCTCCTGGTAG MASSSDSEDDSFMAVDQEETVLEGTMDQDEEPHPVLEAEETRHNRSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASVTIGTSEMNAFLDDPEFADIMLRAEQAIEVGIFPERISQGSSGSYFVKDPKRKIIGVFKPKSEEPYGQLNPKWTKYVHKVCCPCCFGRGCLIPNQGYLSEAGAYLVDNKLHLSIVPKTKVVWLVSETFNYNAIDRAKSRGKKYALEKVPKVGRKFHRIGLPPKIGSFQLFVEGYKEAEYWLRKFEADPLPENIRKQFQSQFERLVILDYIIRNTDRGNDNWLVRYEKQKCEKEIDHKESKWIDDEEFLIKIAAIDNGLAFPFKHPDEWRAYPFHWAWLPQAKVPFSEEIRNLILPYISDMNFVQDLCEDLYELFKTDKGFDKATFESQMSVMRGQILNLTQALRDGKSPFQLVQIPCVIVERSQGGSQGRIVHLSNSFTQTVNCRKPFFSSW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29449 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 623 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28812209:- chr17:27082998-27182250:- chr17:27139227:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.22Mb] 50 51 50 48.99 ONLY_REF_SPLICE YES_LDAS 1.4262 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29450 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 626 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73260983:- chr17:71244588-71258491:- chr17:71257122:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FAM104|74-186|4.5e-56 zf-CCCH-PARTIAL|~104-115|2.4e-07^zf_CCCH_4-PARTIAL|~104-108|0.01^Torus-PARTIAL|~104-118|0.0039^zf-CCCH_2-PARTIAL|~104-114|3.1e-05^zf-CCCH_3-PARTIAL|~104-118|2e-11^zf-CCCH_4|110-114|0.45^zf-CCCH|119-143|1.6e-06^zf-CCCH_3|120-159|5.2e-05^Torus|121-142|0.00019^zf-CCCH_2|123-142|6.8e-06^zf-CCCH_4|124-142|0.011^zf_CCCH_4|126-142|0.00011^Torus|146-168|7.4e-05^zf-CCCH_4|147-165|0.0012^zf-CCCH|148-165|2.5e-05^zf_CCCH_4|148-165|2.1e-06^zf-CCCH_2|148-165|0.0001 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[11696] 47 57 47 48.62 ONLY_REF_SPLICE YES_LDAS 1.3776 GT 1.6402 AG 1.9086 ENST00000403627.7 1-221 ENST00000344935.8 104-540 chr17|-|[1]73232086-73232306[0]<==>chr17|-|[2]73248494-73248536[2]|[1]73252630-73252723[1]|[0]73253931-73254026[1]|[0]73257681-73257833[1]|[0]73260933-73260983[1] atgggggggcgcggagcagacgccggaagtagtggtggtacgggtccgactgaggggtactcgccaccggctgcgtccacccgagcggctgcgagagccaaggcccgagggggtgggcgtggcggccgccgaaacacaaccccctctgttccctctcttcgcggagcggcgccgcgtagcttccatccgccagctgccatgagcgagcgcctccgtcccagAGTCGGCCTCAGCTGTGTGCAACTTCTTCACTAAAGGGCTCTGTGAGAAAGGGAAACTCTGCCCCTTCCGACATGACCGAGGGGAGAAGATGGTGGTATGCAAGCACTGGCTCCGGGGGCTCTGCAAGAAGGGTGATCACTGCAAGTTCCTGCACCAGTATGACCTCACCAGGATGCCTGAGTGCTACTTCTACTCCAAGTTTGGTGACTGCAGCAACAAGGAGTGTTCCTTCCTCCATGTGAAGCCAGCTTTCAAGTCCCAGGACTGTCCTTGGTATGACCAAGGTTTCTGCAAGGACGGTCCTCTGTGTAAATACCGCCATGTCCCCAGAATAATGTGTCTCAACTATTTAGTTGGCTTCTGCCCCGAGGGACCCAAGTGCCAATTTGCTCAGAAGATTCGGGAATTCAAGCTGCTGCCTGGAAGCAAGATCTAA MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRVGLSCVQLLH*RAL*ERETLPLPT*PRGEDGGMQALAPGALQEG*SLQVPAPV*PHQDA*VLLLLQVW*LQQQGVFLPPCEASFQVPGLSLV*PRFLQGRSSV*IPPCPQNNVSQLFSWLLPRGTQVPICSEDSGIQAAAWKQDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29451 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 624 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28842682:- chr17:27082998-27182250:- chr17:27169700:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.22Mb] 46 3 46 0.87 ONLY_REF_SPLICE YES_LDAS 0.6752 GT 1.6729 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29452 LRRFIP1::MLPH ENSG00000124831.20::ENSG00000115648.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 619 TRUE 1133 TRUE 421 LRRFIP1 ENSG00000124831.20 protein_coding + + chr2:237627587-237813682:+ chr2:237757548:+ chr2:238536230-238722325:+ chr2:238666191:+ MLPH ENSG00000115648.14 protein_coding + + chr2:237485428-237555322:+ chr2:237553566:+ chr2:238394071-238463965:+ chr2:238462209:+ chr2:237758006,chr2:237758007,chr2:237758007 chr2:237552446,chr2:237552444,chr2:237552466 NA NA chr2:238666649,chr2:238666650,chr2:238666650 chr2:238461089,chr2:238461087,chr2:238461109 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ATG16|27-81|0.1^Seryl_tRNA_N|30-68|0.34^TPR_MLP1_2|31-69|0.19^LRRFIP|33-117|9.6e-19^LRRFIP|179-214|0.069^LRRFIP|218-378|3e-50^TPR_MLP1_2|261-353|7.3e-07^Seryl_tRNA_N|264-293|0.081^DASH_Dam1|266-295|0.00086^ATG16|272-373|0.032^BMT5-like|290-394|0.00011^Surfac_D-trimer|297-303|0.9^Seryl_tRNA_N|301-344|0.18^TPR_MLP1_2|357-440|0.039^Seryl_tRNA_N|361-440|6.6e-07^DASH_Dam1|361-384|0.59^Surfac_D-trimer|367-383|0.29^ATG16|371-438|0.16^LRRFIP|404-565|4.6e-39^ATG16|485-517|0.099^DASH_Dam1|490-508|4.6^Seryl_tRNA_N|495-515|0.14^TPR_MLP1_2|495-513|0.4^Surfac_D-trimer|500-513|1.2^ATG16|544-631|5.3e-06^Seryl_tRNA_N|550-596|7^TPR_MLP1_2|556-629|0.02^Surfac_D-trimer|561-583|0.00016^DASH_Dam1|561-574|1.5^BMT5-like|574-593|1.2^LRRFIP|585-626|0.5^Seryl_tRNA_N|592-633|0.46 none ["LRRFIP1:Oncogene"];["Klijn_CellLines","DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.07Mb];LOCAL_REARRANGEMENT:+:[72258] 45 144 45 37.59 ONLY_REF_SPLICE YES_LDAS 1.1899 GT 1.5329 AG 1.9656 ENST00000308482.14 1-1224 ENST00000338530.8 1693-1719 chr2|+|[0]237627645-237627740[2]|[0]237708544-237708630[2]|[0]237714259-237714276[2]|[0]237717762-237717809[2]|[0]237719523-237719567[2]|[0]237720772-237720822[2]|[0]237723548-237723586[2]|[0]237727876-237727935[2]|[0]237733774-237733818[2]|[0]237735268-237735333[2]|[0]237739232-237739309[2]|[0]237748364-237748399[2]|[0]237749199-237749324[2]|[0]237751200-237751271[2]|[0]237753309-237753479[2]|[0]237756095-237756187[2]|[0]237757456-237757548[2]<==>chr2|+|[0]237553566-237553592[2] atggacatgggcacccagggatcggggcgcaagcggctccccaaccgggagcggctcacggcggaggacgacgcgctcaaccagatcgcgcgggaggcggaagcccggctcgctgcaaaacgggcggcccgcgcggaggctcgcgagatccgcatgaaggagctggagcggcagcagaaggagatctatcaggtccaaaagaaatattatgggctggatacaaaatggggtgacatcgagcagtggatggaagacagtgagcgctactctcgtagatccagaagaaacacatcggcttctgatgaagacgagcgcatgtcagtgggtagtcgtggaagcctgaggtcgcagcctgacttggagtatgggggtccttacgcctggacaaatggttatgatggagaattgtatggatcacagtccctgaatagaagatctggcaggccctcctgtctgtacagcgctgcccggccttcggggagttaccgggcgtctgtgttggatgaaggcagcttcggtgggacccgacggggcagcacctccggctcccgtgctccctcggagtacagcggccacctcaactccagctcccgcgcctcctccagggccagctcggcccgggccagccctgtggtagaagagagaccagaaaaagattttactgagaaggggtctcgtaacatgccgggcctgtctgcagccacgctggcctctctgggtgggacttcctctcggagaggcagcggagacacctccatctccatcgacaccgaggcatccatcagggaaatcaaggaactcaatgagttaaaggaccagattcaggatgtagaaggcaaatacatgcagggattgaaagagatgaaggactctctagcagaagttgaagagaaatataagaaggctatggtttccaatgctcagctagacaatgaaaagacaaacttcatgtaccaggttgataccctaaaagatatgttgctggagcttgaagaacagctggctgaatctaggcggcagtacgaagagaaaaacaaagaatttgaaagggaaaaacacgcccacagtatactgcaatttcagtttgctgaagtcaaggaggccctgaagcaaagagaggaaatgctcgaggaaatccgacagctacagcagaaacaggcgagttctatcagggagatttctgatcttcaggaaacaatagagtggaaagacaaaaagatagggAAACCTGTGGTGGCCCACCAGTCCTAA MDMGTQGSGRKRLPNRERLTAEDDALNQIAREAEARLAAKRAARAEAREIRMKELERQQKEIYQVQKKYYGLDTKWGDIEQWMEDSERYSRRSRRNTSASDEDERMSVGSRGSLRSQPDLEYGGPYAWTNGYDGELYGSQSLNRRSGRPSCLYSAARPSGSYRASVLDEGSFGGTRRGSTSGSRAPSEYSGHLNSSSRASSRASSARASPVVEERPEKDFTEKGSRNMPGLSAATLASLGGTSSRRGSGDTSISIDTEASIREIKELNELKDQIQDVEGKYMQGLKEMKDSLAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLEEIRQLQQKQASSIREISDLQETIEWKDKKIGKPVVAHQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29453 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 617 TRUE 1132 TRUE 420 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27494300:+ chr12:27599669-27655118:+ chr12:27647233:+ chr12:27527208,chr12:27527208 chr12:27493125,chr12:27493122 NA NA chr12:27680141,chr12:27680141 chr12:27646058,chr12:27646055 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPFIBP1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.02Mb];LOCAL_REARRANGEMENT:+:[21246] 44 84 44 26.38 ONLY_REF_SPLICE YES_LDAS 1.014 GT 1.4256 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29454 HIF1A::SYT16 ENSG00000100644.17::ENSG00000139973.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 646 TRUE 1160 TRUE 443 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:62075135:+ chr14:62278692-62579268:+ chr14:62541853:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HLH-PARTIAL|18-35~|3.2e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.25Mb] 43 37 43 15.75 ONLY_REF_SPLICE YES_LDAS 0.8464 GT 1.2419 AG 1.9329 ENST00000323441.10 1-35 ENST00000568344.5 737-1938 chr14|+|[0]61695805-61695839[1]<==>chr14|+|[1]62075135-62075391[2]|[0]62080834-62081274[2]|[0]62084196-62084385[0]|[1]62100394-62100707[2] atggagggcgccggcggcgcgaacgacaagaaaaaATTTGGATGGAGCCAGCCAACGGCGTTATTCTGAGAATCTCTCCTACGGTGAAGATGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATGCCAAACACCACGGCACATCTCACCAAGAGTCCAGTGTGGTCCAAAGCCTCAGGCGCCAATCCACAGAGGGCAGCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTATGCCACTGACAGCTCCTCCATGTGGAGTCCAGAGGAACAGGACAGGACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCTCAAAGTGTGGTGACCTAGATGTCATCTTTGAATATAGAGCCGCCAGCCAGAAGCTCACAGTGACCATTGTGAGGGCACAGGGCCTCCCAGATAAGGACCGAAGTGGTGTCAACTCCTGGCAAGTTCATGTAGTGCTGCTGCCTGGTAAGAAACACAGGGGCAGGACGAACATACAGAGAGGGCCCAACCCCGTCTTCAGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGTGGCTGCCTGTGCTGTCCGCTTCCGCCTGTACGCTGCCCGGAAGATGACCCGAGAGAGAATGATGGGAGAGAAACTATTCTATCTCAGCCACCTGCACCCAGAAGGGGAAATGAAAGTGACTCTGGTTCTGGAGCCAAGAAGTAATATAAGCAGTGGAGGGTCTCCGCTCAGCCCATCTGCGGTTTCTCACAGTGATAGTACTTCATCCACGCAGTCGCTGTCTCATGGAGGGGCGCCAGAGCTGTTGGTGGGGCTCTCGTACAATGCCACAACGGGGCGATTATCTGTGGAAATGATCAAAGGCAGCCATTTCCGAAACCTCGCTGTTAACCGAGCACCTGATACATATGGAAAACTCTTTCTCCTCAATTCTGTGGGTCAAGAGATGTCCCGTTGCAAGACGTCCATTCGGCGTGGTCAGCCCAATCCTGTCTATAAGGAGACCTTTGTTTTCCAGGTGGCCCTCTTTCAGCTGTCTGATGTCACGTTGATGATTTCCGTTTATAACAGGCGTACTATGAAGCGTAAAGAGATGATTGGCTGGATTGCCCTGGGCCAGAACAGCAGTGGAGAGGAGGAACAAGATCACTGGGAGGAGATGAAGGAAACCAAAGGCCAGCAGATCTGCAGATGGCACACTTTGCTGGAATCCTAG MEGAGGANDKKKFGWSQPTALF*ESLLR*R*PHPCSLTVPM*KRGCQTPRHISPRVQCGPKPQAPIHRGQLGDGDSF**PGI*RFLCH*QLLHVESRGTGQDQFAGAIRGLRAHLKVW*PRCHL*I*SRQPEAHSDHCEGTGPPR*GPKWCQLLASSCSAAAW*ETQGQDEHTERAQPRLQGEGHLCQAGAQRCGCLCCPLPPVRCPEDDPRENDGRETILSQPPAPRRGNESDSGSGAKK*YKQWRVSAQPICGFSQ**YFIHAVAVSWRGARAVGGALVQCHNGAIICGNDQRQPFPKPRC*PST*YIWKTLSPQFCGSRDVPLQDVHSAWSAQSCL*GDLCFPGGPLSAV*CHVDDFRL*QAYYEA*RDDWLDCPGPEQQWRGGTRSLGGDEGNQRPADLQMAHFAGIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 29455 CENPX::NTN4 ENSG00000169689.15::ENSG00000074527.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 635 TRUE 1146 TRUE 432 CENPX ENSG00000169689.15 protein_coding - - chr17:82018702-82024107:- chr17:82022826:- chr17:79976578-79981983:- chr17:79980702:- NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95710629:- chr12:96051583-96184967:- chr12:96104407:- chr17:82020274,chr17:82020284 chr12:95711516,chr12:95711516 NA NA chr17:79978150,chr17:79978160 chr12:96105294,chr12:96105294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CENP-X-PARTIAL|12-36~|4.2e-14 none ["CCLE_StarF2019"] 30 0 30 0 ONLY_REF_SPLICE YES_LDAS 0.4322 GT 1.9086 AG 1.9899 ENST00000584347.1 1-36 ENST00000343702.9 992-1887 chr17|-|[2]82022826-82022861[0]<==>chr12|-|[2]95659086-95659222[1]|[0]95665810-95665980[1]|[0]95670078-95670146[1]|[0]95682707-95682822[2]|[1]95683498-95683711[1]|[0]95710441-95710629[1] atggagggagcaggagctggatccggcttccggaagCCTGCAAGTGTAATGGGCATGCTGATACCTGTCACTTCGACGTTAATGTGTGGGAGGCATCAGGGAATCGTAGTGGTGGTGTCTGTGATGACTGTCAGCACAACACAGAAGGACAGTATTGCCAGAGGTGCAAGCCAGGCTTCTATCGTGACCTGCGGAGACCCTTCTCAGCTCCAGATGCTTGCAAACCGTGTTCCTGCCATCCAGTAGGATCAGCTGTCCTTCCTGCCAACTCAGTGACCTTCTGCGACCCCAGCAATGGTGACTGCCCTTGCAAGCCTGGGGTGGCAGGGCGACGTTGTGACAGGTGCATGGTGGGATACTGGGGCTTCGGAGACTATGGCTGTCGACCATGTGACTGTGCGGGGAGCTGTGACCCTATCACCGGAGACTGCATCAGCAGCCACACAGACATAGACTGGTATCATGAAGTTCCTGACTTCCGTCCCGTGCACAATAAGAGCGAACCAGCCTGGGAGTGGGAGGATGCGCAGGGGTTTTCTGCACTTCTACACTCAGGTAAATGCGAATGTAAGGAACAGACATTAGGAAATGCCAAGGCATTCTGTGGAATGAAATATTCATATGTGCTAAAAATAAAGATTTTATCAGCTCATGATAAAGGTACTCATGTTGAGGTCAATGTGAAGATTAAAAAGGTCTTAAAATCTACCAAACTGAAGATTTTCCGAGGAAAGCGAACATTATATCCAGAATCATGGACGGACAGAGGATGCACTTGTCCAATCCTCAATCCTGGTTTGGAATACCTTGTAGCAGGACATGAGGATATAAGAACAGGCAAACTAATTGTGAATATGAAAAGCTTTGTCCAGCACTGGAAACCTTCTCTTGGAAGAAAAGTCATGGATATTTTAAAAAGAGAGTGCAAGTAG MEGAGAGSGFRKPASVMGMLIPVTSTLMCGRHQGIVVVVSVMTVSTTQKDSIARGASQASIVTCGDPSQLQMLANRVPAIQ*DQLSFLPTQ*PSATPAMVTALASLGWQGDVVTGAWWDTGASETMAVDHVTVRGAVTLSPETASAATQT*TGIMKFLTSVPCTIRANQPGSGRMRRGFLHFYTQVNANVRNRH*EMPRHSVE*NIHMC*K*RFYQLMIKVLMLRSM*RLKRS*NLPN*RFSEESEHYIQNHGRTEDALVQSSILVWNTL*QDMRI*EQAN*L*I*KALSSTGNLLLEEKSWIF*KESAS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29456 MTCH1::MIDEAS-AS1 ENSG00000137409.21::ENSG00000259065.3 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1135 TRUE 423 MTCH1 ENSG00000137409.21 protein_coding - - chr6:36965807-36986298:- chr6:36985853:- chr6:36933583-36954074:- chr6:36953629:- MIDEAS-AS1 ENSG00000259065.3 lncRNA + + chr14:73787355-73803300:+ chr14:73802885:+ chr14:74254058-74270003:+ chr14:74269588:+ chr6:36981658,chr6:36981664 chr14:73788147,chr14:73788141 NA NA chr6:36949434,chr6:36949440 chr14:74254850,chr14:74254844 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 28 30 28 4.16 ONLY_REF_SPLICE YES_LDAS 0.4633 GT 1.9656 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29458 NECAP2::ERC2 ENSG00000157191.20::ENSG00000187672.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 632 TRUE 1144 TRUE 430 NECAP2 ENSG00000157191.20 protein_coding + + chr1:16440721-16460078:+ chr1:16449201:+ chr1:16767216-16786573:+ chr1:16775696:+ ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:55734918:- chr3:55542339-56503123:- chr3:55768946:- chr1:16451651,chr1:16451652 chr3:55797708,chr3:55797707 NA NA chr1:16778146,chr1:16778147 chr3:55831736,chr3:55831735 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF1681|6-162|2.7e-65 none ["ERC2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr3] 25 7 25 5.15 ONLY_REF_SPLICE YES_LDAS 0.4344 GT 1.8323 AG 1.8892 ENST00000337132.10 1-489 ENST00000492584.3 2589-2898 chr1|+|[0]16440762-16440853[1]|[2]16443632-16443732[0]|[1]16447870-16447974[0]|[1]16448060-16448141[1]|[2]16449093-16449201[2]<==>chr3|-|[2]55683833-55683859[0]|[2]55699378-55699512[0]|[2]55734771-55734918[2] atggaggagagcgggtacgagtcggtgctctgtgtcaagcctgacgtccacgtctaccgcatccctccgcgggctaccaaccgtggctacagggctgcggagtggcagctggaccagccatcatggagtggccggctgaggatcactgcaaagggacagatggcctacatcaagctggaggacaggacgtcaggggagctctttgctcaggccccggtggatcagtttcctggcacagctgtggagagtgtgacggattccagcaggtacttcgtgatccgcatcgaagatggaaatgggcgacgggcgtttattggaattggcttcggggaccgaggtgatgcctttgacttcaatgttgcattgcaggaccatttcaagtgggtgaaacagcagtgtgaatttgcaaaacaagcccagaacccagaccaaggccctaaactggacctgggcttcaaggagggccagaccatcaagctcaacatcgcaACAGGAAGCACTACTTGCAGCCATCAGTGAAAAAGATGCAAACATTGCCTTGCTGGAATTGTCTGCCTCCAAAAAGAAAAAGACGCAGGAAGAAGTCATGGCCCTCAAGCGGGAAAAAGACCGACTAGTACATCAATTAAAGCAGCAGACCCAGAACAGAATGAAGTTGATGGCAGACAACTATGATGATGACCATCACCATTACCACCACCACCACCATCACCACCACCATCGATCTCCTGGGAGGTCGCAACATTCCAATCACAGGCCCTCTCCGGACCAGGATGACGAGGAGGGCATATGGGCATAG MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIATGSTTCSHQ*KRCKHCLAGIVCLQKEKDAGRSHGPQAGKRPTSTSIKAADPEQNEVDGRQL***PSPLPPPPPSPPPSISWEVATFQSQALSGPG*RGGHMGI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29459 AGFG1::COL4A3 ENSG00000173744.18::ENSG00000169031.21 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 631 FALSE NA FALSE NA AGFG1 ENSG00000173744.18 protein_coding + + chr2:227472152-227561217:+ chr2:227472588:+ chr2:228336868-228425933:+ chr2:228337304:+ COL4A3 ENSG00000169031.21 protein_coding + + chr2:227164624-227314792:+ chr2:227269910:+ chr2:228029340-228179508:+ chr2:228134626:+ chr2:227477831,chr2:227477830 chr2:227267881,chr2:227267877 NA NA chr2:228342547,chr2:228342546 chr2:228132597,chr2:228132593 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ArfGap|15-127|1.7e-33 C4-PARTIAL|~1505-1552|4.8e-44^C4|1557-1667|2.9e-46 ["COL4A3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.16Mb] 25 15 25 14.81 ONLY_REF_SPLICE YES_LDAS 0.5736 GT 1.7465 AG 1.5219 ENST00000409979.6 1-167 ENST00000396578.8 1505-5013 chr2|+|[0]227472422-227472588[1]<==>chr2|+|[1]227269910-227269980[2]|[0]227270770-227270952[2]|[0]227272949-227273117[0]|[1]227276385-227276477[0]|[1]227277449-227277553[0]|[1]227279793-227279890[2]|[0]227280440-227280590[0]|[1]227280893-227281006[0]|[1]227282365-227282532[0]|[1]227283767-227283856[0]|[1]227284211-227284345[0]|[1]227289150-227289248[0]|[1]227289999-227290088[0]|[1]227290747-227290886[2]|[0]227293191-227293317[0]|[1]227294490-227294570[0]|[1]227294964-227295062[0]|[1]227295269-227295316[0]|[1]227297674-227297859[0]|[1]227298682-227298812[2]|[0]227303038-227303110[0]|[1]227303859-227303930[0]|[1]227304019-227304144[0]|[1]227304985-227305083[0]|[1]227307710-227307919[0]|[1]227308899-227309076[1]|[2]227309204-227309318[2]|[0]227310776-227310948[1]|[2]227311786-227311870[2] atggcggccagcgcgaagcggaagcaggaggagaagcacctgaagatgctgcgggacatgaccggcctcccgcacaaccgaaagtgcttcgactgcgaccagcgcggccccacctacgttaacatgacggtcggctccttcgtgtgtacctcctgctccggcagcctGAAGACAAGGCGCAGCTGGCTTGAAAGGAAGCCCAGGGTCCCCAGGAAATACAGGTCTTCCAGGATTTCCAGGTTTCCCAGGTGCCCAGGGTGACCCAGGACTTAAAGGAGAAAAAGGTGAAACACTTCAGCCTGAGGGGCAAGTGGGTGTCCCAGGTGACCCGGGGCTCAGAGGCCAACCTGGGAGAAAGGGCTTGGATGGAATTCCTGGAACTCCGGGAGTGAAAGGATTACCAGGACCTAAAGGCGAACTGGCTCTGAGTGGTGAGAAAGGGGACCAAGGTCCTCCAGGGGATCCTGGCTCCCCTGGGTCCCCAGGACCTGCAGGACCAGCTGGACCACCTGGCTACGGACCCCAAGGAGAACCTGGTCTCCAGGGCACGCAAGGAGTTCCTGGAGCCCCCGGACCACCCGGAGAAGCCGGCCCTAGGGGAGAGCTCAGTGTTTCAACACCAGTTCCAGGCCCACCAGGACCTCCAGGGCCCCCTGGCCATCCTGGCCCCCAAGGTCCACCTGGTATCCCTGGATCCCTGGGGAAATGTGGAGATCCTGGTCTTCCAGGGCCTGATGGTGAACCAGGAATTCCAGGAATTGGATTTCCTGGGCCTCCTGGACCTAAGGGAGACCAAGGTTTTCCAGGTACAAAAGGATCACTGGGTTGTCCTGGAAAAATGGGAGAGCCTGGGTTACCTGGAAAGCCAGGCCTCCCAGGAGCCAAGGGAGAACCAGCAGTAGCCATGCCTGGAGGACCAGGAACACCAGGTTTTCCAGGAGAAAGAGGCAATTCTGGGGAACATGGAGAAATTGGACTCCCTGGACTTCCAGGTCTCCCTGGAACTCCAGGAAATGAAGGGCTTGATGGACCACGAGGAGATCCAGGGCAGCCTGGACCACCTGGAGAACAAGGACCCCCAGGAAGGTGCATAGAGGGTCCCAGGGGAGCCCAAGGACTTCCAGGCTTAAATGGATTGAAAGGGCAACAAGGCAGAAGAGGTAAAACGGGGCCAAAGGGAGACCCAGGAATTCCAGGCTTGGATAGATCAGGATTTCCTGGAGAAACTGGATCACCAGGAATTCCAGGTCATCAAGGTGAAATGGGACCACTGGGTCAAAGAGGATATCCAGGAAATCCGGGAATTTTAGGGCCACCAGGTGAAGATGGAGTGATTGGGATGATGGGCTTTCCTGGAGCCATTGGCCCTCCAGGGCCCCCTGGGAACCCAGGCACACCAGGGCAGAGGGGGAGCCCTGGAATTCCAGGAGTAAAGGGCCAGAGAGGAACCCCAGGAGCCAAGGGGGAACAAGGAGATAAAGGAAATCCCGGGCCTTCAGAGATATCCCACGTAATAGGGGACAAAGGAGAACCAGGTCTCAAAGGATTCGCAGGAAATCCAGGTGAGAAAGGAAACAGAGGCGTTCCAGGGATGCCAGGTTTAAAGGGCCTCAAAGGACTACCCGGACCAGCAGGACCACCAGGCCCCAGAGGAGATTTGGGCAGCACTGGGAATCCTGGAGAACCAGGACTGCGTGGTATACCAGGAAGCATGGGGAACATGGGCATGCCAGGTTCTAAAGGAAAAAGGGGAACTTTGGGATTCCCAGGTCGAGCAGGAAGACCAGGCCTCCCAGGTATTCATGGTCTCCAGGGAGATAAGGGAGAGCCAGGTTATTCAGAAGGTACAAGGCCAGGACCACCGGGACCAACGGGGGATCCAGGACTGCCGGGTGATATGGGAAAGAAAGGAGAAATGGGGCAACCTGGCCCACCTGGACATTTGGGGCCTGCTGGACCTGAGGGAGCCCCTGGAAGTCCTGGAAGTCCTGGCCTCCCAGGAAAGCCAGGTCCTCATGGTGATTTGGGTTTTAAAGGAATCAAAGGCCTCCTGGGCCCTCCAGGAATCAGAGGCCCTCCAGGTCTTCCAGGATTTCCAGGATCTCCTGGACCAATGGGTATAAGAGGTGACCAAGGACGTGATGGAATTCCTGGTCCAGCCGGAGAAAAGGGAGAAACGGGTTTATTGAGGGCCCCTCCAGGCCCAAGAGGGAACCCTGGTGCTCAAGGAGCCAAAGGAGACAGGGGAGCCCCAGGTTTTCCTGGCCTCCCGGGCAGAAAAGGGGCCATGGGAGATGCTGGACCTCGAGGACCCACAGGCATAGAAGGATTCCCAGGGCCACCAGGTCTGCCCGGTGCAATTATCCCTGGCCAGACAGGAAATCGTGGTCCACCAGGCTCAAGAGGAAGCCCAGGTGCGCCTGGTCCCCCTGGACCTCCAGGGAGTCATGTAATAGGCATAAAAGGAGACAAAGGGTCTATGGGCCACCCTGGCCCAAAAGGTCCACCTGGAACTGCAGGAGACATGGGACCACCAGGTCGTCTGGGAGCACCAGGTACTCCAGGTCTTCCAGGACCCAGAGGTGATCCTGGATTCCAGGGGTTTCCAGGCGTGAAAGGAGAAAAGGGTAATCCTGGATTTCTAGGATCCATTGGACCTCCAGGACCAATTGGGCCAAAAGGACCACCTGGTGTACGTGGAGACCCTGGCACACTTAAGATTATCTCCCTTCCAGGAAGCCCAGGGCCACCTGGCACACCTGGAGAACCAGGGATGCAGGGAGAACCTGGGCCACCAGGGCCACCTGGAAACCTAGGACCCTGTGGGCCAAGAGGTAAGCCAGGCAAGGATGGAAAACCAGGAACTCCTGGACCAGCTGGAGAAAAAGGCAACAAAGGTTCTAAAGGAGAGCCAGGACCAGCTGGATCAGATGGATTGCCAGGTTTGAAAGGAAAACGTGGAGACAGTGGATCACCTGCAACCTGGACAACGAGAGGCTTTGTCTTCACCCGACACAGTCAAACCACAGCAATTCCTTCATGTCCAGAGGGGACAGTGCCACTCTACAGTGGGTTTTCTTTTCTTTTTGTACAAGGAAATCAACGAGCCCACGGACAAGACCTTGGAACTCTTGGCAGCTGCCTGCAGCGATTTACCACAATGCCATTCTTATTCTGCAATGTCAATGATGTATGTAATTTTGCATCTCGAAATGATTATTCATACTGGCTGTCAACACCAGCTCTGATGCCAATGAACATGGCTCCCATTACTGGCAGAGCCCTTGAGCCTTATATAAGCAGATGCACTGTTTGTGAAGGTCCTGCGATCGCCATAGCCGTTCACAGCCAAACCACTGACATTCCTCCATGTCCTCACGGCTGGATTTCTCTCTGGAAAGGATTTTCATTCATCATGTTCACAAGTGCAGGTTCTGAGGGCACCGGGCAAGCACTGGCCTCCCCTGGCTCCTGCCTGGAAGAATTCCGAGCCAGCCCATTTCTAGAATGTCATGGAAGAGGAACGTGCAACTACTATTCAAATTCCTACAGTTTCTGGCTGGCTTCATTAAACCCAGAAAGAATGTTCAGAAAGCCTATTCCATCAACTGTGAAAGCTGGGGAATTAGAAAAAATAATAAGTCGCTGTCAGGTGTGCATGAAGAAAAGACACTGA MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLKTRRSWLERKPRVPRKYRSSRISRFPRCPG*PRT*RRKR*NTSA*GASGCPR*PGAQRPTWEKGLGWNSWNSGSERITRT*RRTGSEW*ERGPRSSRGSWLPWVPRTCRTSWTTWLRTPRRTWSPGHARSSWSPRTTRRSRP*GRAQCFNTSSRPTRTSRAPWPSWPPRSTWYPWIPGEMWRSWSSRA*W*TRNSRNWISWASWT*GRPRFSRYKRITGLSWKNGRAWVTWKARPPRSQGRTSSSHAWRTRNTRFSRRKRQFWGTWRNWTPWTSRSPWNSRK*RA*WTTRRSRAAWTTWRTRTPRKVHRGSQGSPRTSRLKWIERATRQKR*NGAKGRPRNSRLG*IRISWRNWITRNSRSSR*NGTTGSKRISRKSGNFRATR*RWSDWDDGLSWSHWPSRAPWEPRHTRAEGEPWNSRSKGPERNPRSQGGTRR*RKSRAFRDIPRNRGQRRTRSQRIRRKSR*ERKQRRSRDARFKGPQRTTRTSRTTRPQRRFGQHWESWRTRTAWYTRKHGEHGHARF*RKKGNFGIPRSSRKTRPPRYSWSPGR*GRARLFRRYKARTTGTNGGSRTAG*YGKERRNGATWPTWTFGACWT*GSPWKSWKSWPPRKARSSW*FGF*RNQRPPGPSRNQRPSRSSRISRISWTNGYKR*PRT*WNSWSSRRKGRNGFIEGPSRPKREPWCSRSQRRQGSPRFSWPPGQKRGHGRCWTSRTHRHRRIPRATRSARCNYPWPDRKSWSTRLKRKPRCAWSPWTSRESCNRHKRRQRVYGPPWPKRSTWNCRRHGTTRSSGSTRYSRSSRTQR*SWIPGVSRRERRKG*SWISRIHWTSRTNWAKRTTWCTWRPWHT*DYLPSRKPRATWHTWRTRDAGRTWATRATWKPRTLWAKR*ARQGWKTRNSWTSWRKRQQRF*RRARTSWIRWIARFERKTWRQWITCNLDNERLCLHPTQSNHSNSFMSRGDSATLQWVFFSFCTRKSTSPRTRPWNSWQLPAAIYHNAILILQCQ*CM*FCISK*LFILAVNTSSDANEHGSHYWQSP*ALYKQMHCL*RSCDRHSRSQPNH*HSSMSSRLDFSLERIFIHHVHKCRF*GHRASTGLPWLLPGRIPSQPISRMSWKRNVQLLFKFLQFLAGFIKPRKNVQKAYSINCESWGIRKNNKSLSGVHEEKTL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29460 SPINT1::HIF1A ENSG00000166145.15::ENSG00000100644.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 622 TRUE 1136 TRUE 424 SPINT1 ENSG00000166145.15 protein_coding + + chr15:40844018-40858207:+ chr15:40845029:+ chr15:41136216-41150405:+ chr15:41137227:+ HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61745691:+ chr14:62162231-62214977:+ chr14:62212409:+ chr15:40852646,chr15:40852852,chr15:40852644,chr15:40852645 chr14:61745369,chr14:61745405,chr14:61745369,chr14:61745365 NA NA chr15:41144844,chr15:41145050,chr15:41144842,chr15:41144843 chr14:62212087,chr14:62212123,chr14:62212087,chr14:62212083 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF5699|74-89|0.00011^DUF5699|102-112|1.2^MANEC|110-199|9.1e-34^Kunitz_BPTI|291-311|8.8e-07 none ["SPINT1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr14] 23 72 23 34.99 ONLY_REF_SPLICE YES_LDAS 0.8355 GT 1.8892 AG 1.8892 ENST00000568823.5 1-660 ENST00000539097.2 2275-2553 chr15|+|[1]40844067-40844186[0]|[1]40844490-40845029[0]<==>chr14|+|[0]61745691-61745817[0]|[1]61746934-61747085[2] gggagaaggcggccgagccccagctctccgagcaccgggtcggaagccgcgacccgagccgcgcaggaagctgggaccggaacctcggcggacccggccccacccaactcacctgcgcaggtcaccagcaccctcggaacccagaggcccgcgctctgaaggtgacccccctggggaggaaggcgatggcccctgcgaggacgatggcccgcgcccgcctcgccccggccggcatccctgccgtcgccttgtggcttctgtgcacgctcggcctccagggcacccaggccgggccaccgcccgcgccccctgggctgcccgcgggagccgactgcctgaacagctttaccgccggggtgcctggcttcgtgctggacaccaacgcctcggtcagcaacggagctaccttcctggagtcccccaccgtgcgccggggctgggactgcgtgcgcgcctgctgcaccacccagaactgcaacttggcgctagtggagctgcagcccgaccgcggggaggacgccatcgccgcctgcttcctcatcaactgcctctacgagcagaacttcgtgtgcaagttcgcgcccagggagggcttcatcaactacctcacgagggaagtgtaccgctcctaccgccagctgcggacccagggctttggagGGAACATTATTACAGCAGCCAGACGATCATGCAGCTACTACATCACTTTCTTGGAAACGTGTAAAAGGATGCAAATCTAGTGAACAGAATGGAATGGAGCAAAAGACAATTATTTTAATACCCTCTGATTTAGCATGTAGACTGCTGGGGCAATCAATGGATGAAAGTGGATTACCACAGCTGACCAGTTATGATTGTGAAGTTAATGCTCCTATACAAGGCAGCAGAAACCTACTGCAGGGTGAAGAATTACTCAGAGCTTTGGATCAAGTTAACTGA EKAAEPQLSEHRVGSRDPSRAGSWDRNLGGPGPTQLTCAGHQHPRNPEARALKVTPLGRKAMAPARTMARARLAPAGIPAVALWLLCTLGLQGTQAGPPPAPPGLPAGADCLNSFTAGVPGFVLDTNASVSNGATFLESPTVRRGWDCVRACCTTQNCNLALVELQPDRGEDAIAACFLINCLYEQNFVCKFAPREGFINYLTREVYRSYRQLRTQGFGGNIITAARRSCSYYITFLETCKRMQI**TEWNGAKDNYFNTL*FSM*TAGAING*KWITTADQL*L*S*CSYTRQQKPTAG*RITQSFGSS*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense 29461 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 627 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73257833:- chr17:71244588-71258491:- chr17:71253972:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FAM104|74-186|4.5e-56 zf-CCCH-PARTIAL|~155-165|2.5e-05^zf_CCCH_4-PARTIAL|~155-165|2.1e-06^Torus-PARTIAL|~155-168|7.4e-05^zf-CCCH_2-PARTIAL|~155-165|0.0001^zf-CCCH_3-PARTIAL|~155-159|5.2e-05^zf-CCCH_4-PARTIAL|~155-165|0.0012 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[11696] 21 35 21 8.1 ONLY_REF_SPLICE YES_LDAS 0.4192 GT 1.6402 AG 1.9219 ENST00000403627.7 1-221 ENST00000344935.8 155-540 chr17|-|[1]73232086-73232306[0]<==>chr17|-|[2]73248494-73248536[2]|[1]73252630-73252723[1]|[0]73253931-73254026[1]|[0]73257681-73257833[1] atgggggggcgcggagcagacgccggaagtagtggtggtacgggtccgactgaggggtactcgccaccggctgcgtccacccgagcggctgcgagagccaaggcccgagggggtgggcgtggcggccgccgaaacacaaccccctctgttccctctcttcgcggagcggcgccgcgtagcttccatccgccagctgccatgagcgagcgcctccgtcccagGGAAACTCTGCCCCTTCCGACATGACCGAGGGGAGAAGATGGTGGTATGCAAGCACTGGCTCCGGGGGCTCTGCAAGAAGGGTGATCACTGCAAGTTCCTGCACCAGTATGACCTCACCAGGATGCCTGAGTGCTACTTCTACTCCAAGTTTGGTGACTGCAGCAACAAGGAGTGTTCCTTCCTCCATGTGAAGCCAGCTTTCAAGTCCCAGGACTGTCCTTGGTATGACCAAGGTTTCTGCAAGGACGGTCCTCTGTGTAAATACCGCCATGTCCCCAGAATAATGTGTCTCAACTATTTAGTTGGCTTCTGCCCCGAGGGACCCAAGTGCCAATTTGCTCAGAAGATTCGGGAATTCAAGCTGCTGCCTGGAAGCAAGATCTAA MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRETLPLPT*PRGEDGGMQALAPGALQEG*SLQVPAPV*PHQDA*VLLLLQVW*LQQQGVFLPPCEASFQVPGLSLV*PRFLQGRSSV*IPPCPQNNVSQLFSWLLPRGTQVPICSEDSGIQAAAWKQDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29462 HIF1A::SYT16 ENSG00000100644.17::ENSG00000139973.18 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 647 TRUE 1160 TRUE 443 HIF1A ENSG00000100644.17 protein_coding + + chr14:61695513-61748259:+ chr14:61695839:+ chr14:62162231-62214977:+ chr14:62162557:+ SYT16 ENSG00000139973.18 protein_coding + + chr14:61811974-62112550:+ chr14:62069603:+ chr14:62278692-62579268:+ chr14:62536321:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HLH-PARTIAL|18-35~|3.2e-06 C2-PARTIAL|~524-627|7.3e-18 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.25Mb] 21 44 21 11.63 ONLY_REF_SPLICE YES_LDAS 0.4701 GT 1.2419 AG 1.9656 ENST00000323441.10 1-35 ENST00000568344.5 524-1938 chr14|+|[0]61695805-61695839[1]<==>chr14|+|[1]62069603-62069815[0]|[1]62075135-62075391[2]|[0]62080834-62081274[2]|[0]62084196-62084385[0]|[1]62100394-62100707[2] atggagggcgccggcggcgcgaacgacaagaaaaaTCAACAGCTTTGGGGATGACGAAGAGCTGTCCACATCTTCTGACAGTGACGAGGAGGTGATCAAACAATTTGAGATTTCCGTGTCCCGGTCCCAGAGTTTCCGTTCAGTGACATCTGAGAAAGGAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCAGCCGTTCGTTGTTGACACACGGAGAAGATGGCACAGAAGTATCTGCCTGCGAAGATTTGGATGGAGCCAGCCAACGGCGTTATTCTGAGAATCTCTCCTACGGTGAAGATGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATGCCAAACACCACGGCACATCTCACCAAGAGTCCAGTGTGGTCCAAAGCCTCAGGCGCCAATCCACAGAGGGCAGCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTATGCCACTGACAGCTCCTCCATGTGGAGTCCAGAGGAACAGGACAGGACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCTCAAAGTGTGGTGACCTAGATGTCATCTTTGAATATAGAGCCGCCAGCCAGAAGCTCACAGTGACCATTGTGAGGGCACAGGGCCTCCCAGATAAGGACCGAAGTGGTGTCAACTCCTGGCAAGTTCATGTAGTGCTGCTGCCTGGTAAGAAACACAGGGGCAGGACGAACATACAGAGAGGGCCCAACCCCGTCTTCAGGGAGAAGGTCACCTTTGCCAAGCTGGAGCCCAGAGATGTGGCTGCCTGTGCTGTCCGCTTCCGCCTGTACGCTGCCCGGAAGATGACCCGAGAGAGAATGATGGGAGAGAAACTATTCTATCTCAGCCACCTGCACCCAGAAGGGGAAATGAAAGTGACTCTGGTTCTGGAGCCAAGAAGTAATATAAGCAGTGGAGGGTCTCCGCTCAGCCCATCTGCGGTTTCTCACAGTGATAGTACTTCATCCACGCAGTCGCTGTCTCATGGAGGGGCGCCAGAGCTGTTGGTGGGGCTCTCGTACAATGCCACAACGGGGCGATTATCTGTGGAAATGATCAAAGGCAGCCATTTCCGAAACCTCGCTGTTAACCGAGCACCTGATACATATGGAAAACTCTTTCTCCTCAATTCTGTGGGTCAAGAGATGTCCCGTTGCAAGACGTCCATTCGGCGTGGTCAGCCCAATCCTGTCTATAAGGAGACCTTTGTTTTCCAGGTGGCCCTCTTTCAGCTGTCTGATGTCACGTTGATGATTTCCGTTTATAACAGGCGTACTATGAAGCGTAAAGAGATGATTGGCTGGATTGCCCTGGGCCAGAACAGCAGTGGAGAGGAGGAACAAGATCACTGGGAGGAGATGAAGGAAACCAAAGGCCAGCAGATCTGCAGATGGCACACTTTGCTGGAATCCTAG MEGAGGANDKKNQQLWG*RRAVHIF*Q*RGGDQTI*DFRVPVPEFPFSDI*ERKADRIGAETKIQPFVVDTRRRWHRSICLRRFGWSQPTALF*ESLLR*R*PHPCSLTVPM*KRGCQTPRHISPRVQCGPKPQAPIHRGQLGDGDSF**PGI*RFLCH*QLLHVESRGTGQDQFAGAIRGLRAHLKVW*PRCHL*I*SRQPEAHSDHCEGTGPPR*GPKWCQLLASSCSAAAW*ETQGQDEHTERAQPRLQGEGHLCQAGAQRCGCLCCPLPPVRCPEDDPRENDGRETILSQPPAPRRGNESDSGSGAKK*YKQWRVSAQPICGFSQ**YFIHAVAVSWRGARAVGGALVQCHNGAIICGNDQRQPFPKPRC*PST*YIWKTLSPQFCGSRDVPLQDVHSAWSAQSCL*GDLCFPGGPLSAV*CHVDDFRL*QAYYEA*RDDWLDCPGPEQQWRGGTRSLGGDEGNQRPADLQMAHFAGIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE hypoxia inducible factor 1 alpha subunit 1 Yes endometrioid carcinoma, glioblastoma, colorectal, renal, lung, pancreatic epithelial, other oncogene missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 29463 PSKH1::CTCF ENSG00000159792.10::ENSG00000102974.16 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PSKH1 ENSG00000159792.10 protein_coding + + chr16:67893254-67929676:+ chr16:67909706:+ chr16:67927157-67963579:+ chr16:67943609:+ CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67571148:+ chr16:67596370-67673080:+ chr16:67605051:+ chr16:67911942,chr16:67911942 chr16:67567465,chr16:67567462 NA NA chr16:67945845,chr16:67945845 chr16:67601368,chr16:67601365 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CTCF:ArcherDX_panel","CTCF:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.25Mb] 20 7 20 7 ONLY_REF_SPLICE YES_LDAS 0.3889 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase H1 CAMK PSK P11801 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense 29464 ZNF532::LINC01926 ENSG00000074657.14::ENSG00000267593.2 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 633 FALSE NA FALSE NA ZNF532 ENSG00000074657.14 protein_coding + + chr18:58862600-58986480:+ chr18:58865579:+ chr18:56529832-56653712:+ chr18:56532811:+ LINC01926 ENSG00000267593.2 lncRNA + + chr18:58808468-58834364:+ chr18:58813888:+ chr18:56475700-56501596:+ chr18:56481120:+ chr18:58914429,chr18:58914430 chr18:58812557,chr18:58812555 NA NA chr18:56581661,chr18:56581662 chr18:56479789,chr18:56479787 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 16 9 16 8 ONLY_REF_SPLICE YES_LDAS 0.3458 GT 1.9656 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29465 CENPX::NTN4 ENSG00000169689.15::ENSG00000074527.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 634 TRUE 1146 TRUE 432 CENPX ENSG00000169689.15 protein_coding - - chr17:82018702-82024107:- chr17:82022639:- chr17:79976578-79981983:- chr17:79980515:- NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95710629:- chr12:96051583-96184967:- chr12:96104407:- chr17:82020274,chr17:82020284 chr12:95711516,chr12:95711516 NA NA chr17:79978150,chr17:79978160 chr12:96105294,chr12:96105294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 16 9 16 9 ONLY_REF_SPLICE YES_LDAS 0.3602 GT 1.8062 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29466 FAM222B::MYO18A ENSG00000173065.14::ENSG00000196535.20 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 625 TRUE 1137 TRUE 425 FAM222B ENSG00000173065.14 protein_coding - - chr17:28755980-28855232:- chr17:28834293:- chr17:27082998-27182250:- chr17:27161311:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29167021:- chr17:27398140-27507416:- chr17:27494039:- chr17:28796716,chr17:28796718,chr17:28796724 chr17:29173835,chr17:29173834,chr17:29173834 NA NA chr17:27123734,chr17:27123736,chr17:27123742 chr17:27500853,chr17:27500852,chr17:27500852 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.22Mb] 15 9 15 1.14 ONLY_REF_SPLICE YES_LDAS 0.2325 GT 1.9086 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Oesophagus,Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29467 MTFMT::RASL12 ENSG00000103707.10::ENSG00000103710.11 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 638 FALSE NA FALSE NA MTFMT ENSG00000103707.10 protein_coding - - chr15:65001512-65029639:- chr15:65021514:- chr15:65293850-65321977:- chr15:65313852:- RASL12 ENSG00000103710.11 protein_coding - - chr15:65053337-65076690:- chr15:65065273:- chr15:65345675-65369028:- chr15:65357611:- chr15:65020403,chr15:65020412,chr15:65020416 chr15:65068839,chr15:65068846,chr15:65068848 NA NA chr15:65312741,chr15:65312750,chr15:65312754 chr15:65361177,chr15:65361184,chr15:65361186 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Formyl_trans_N|117-220|1.8e-29^Formyl_trans_C|243-349|4.3e-17 Ras-PARTIAL|~104-183|3.6e-36^Roc-PARTIAL|~104-137|1.1e-11^Arf-PARTIAL|~104-143|4.8e-10^MMR_HSR1-PARTIAL|~104-115|2.9e-06^ATP_bind_1-PARTIAL|~104-141|0.00014 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.02Mb];LOCAL_REARRANGEMENT:-:[23698] 14 1 14 1 ONLY_REF_SPLICE YES_LDAS 0.2161 GT 1.9656 AG 1.9656 ENST00000220058.9 1-645 ENST00000220062.9 104-801 chr15|-|[2]65021514-65021616[2]|[1]65023672-65023794[2]|[1]65026831-65027040[2]|[1]65029405-65029613[0]<==>chr15|-|[2]65054899-65055274[2]|[1]65058427-65058617[0]|[2]65059345-65059418[1]|[0]65065217-65065273[1] atgagggtgttggtgcggcgctgttggggtcctccgctggctcatggcgccaggcgtgggaggccgagtccccagtggcgagcactggcccgactcggctgggaggactgccgggactccagagtccgcgagaagcctccctggcgggtgctcttcttcggcacggaccagttcgcccgcgaggcgctgcgggcgctgcacgccgccagggaaaacaaagaagaagagttaatcgacaaactggaggtggtcacaatgccttccccatcaccaaaaggactgccagtgaagcaatatgctgtgcagtctcagcttcccgtatatgagtggccggatgtgggatctggagaatatgatgttggagtagtggcttcgtttggccgacttttgaatgaggctcttattcttaaatttccctatggcatattgaatgttcatcccagttgcctcccgagatggcgtggcccagcccctgtaatccatacagtgcttcacggagacacagttactggagtaacaattatgcaaattagacctaaaaggtttgatgtaggcccaattctcaaacaagaaactgttcctgtgccacccaagagcactgcaaaggaattggaagcagtgttgtcaagactgggtgccaacatgCCCTGACCGTGAAGTTTCTGACCAAGAGGTTTATCAGTGAATATGACCCCAACTTGGAGGACACCTACAGCTCCGAGGAGACTGTGGACCACCAGCCTGTCCACCTGAGGGTCATGGACACTGCAGACCTGGACACCCCCAGGAACTGCGAGCGCTACCTGAACTGGGCCCATGCCTTCCTGGTGGTGTACAGCGTCGACAGCCGCCAGAGCTTTGATAGCAGCAGCAGCTACCTGGAGCTGCTTGCCTTGCACGCGAAGGAGACACAGCGCAGCATCCCTGCCCTGCTGCTGGGCAACAAGCTGGACATGGCTCAGTACAGGCAAGTCACCAAGGCAGAGGGTGTGGCTTTGGCAGGCAGGTTTGGGTGCCTGTTTTTCGAGGTCTCTGCCTGTCTGGACTTTGAGCACGTGCAGCATGTCTTCCACGAGGCAGTGCGAGAGGCACGGCGGGAGCTGGAGAAGAGCCCCCTGACCCGGCCCCTCTTCATCTCCGAGGAGAGGGCCCTGCCCCACCAGGCCCCGCTCACCGCGCGGCATGGGCTGGCCAGCTGCACCTTCAACACGCTCTCCACCATCAACCTGAAGGAGATGCCCACTGTGGCCCAGGCCAAGCTGGTCACCGTGAAGTCATCCCGGGCCCAGAGCAAGCGCAAGGCGCCTACCCTGACTCTCCTGAAGGGCTTCAAGATCTTCTGA MRVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKPPWRVLFFGTDQFAREALRALHAARENKEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWPDVGSGEYDVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMP*P*SF*PRGLSVNMTPTWRTPTAPRRLWTTSLST*GSWTLQTWTPPGTASAT*TGPMPSWWCTASTAARALIAAAATWSCLPCTRRRHSAASLPCCWATSWTWLSTGKSPRQRVWLWQAGLGACFSRSLPVWTLSTCSMSSTRQCERHGGSWRRAP*PGPSSSPRRGPCPTRPRSPRGMGWPAAPSTRSPPST*RRCPLWPRPSWSP*SHPGPRASARRLP*LS*RASRSS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29470 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96630835,chr5:96630834,chr5:96630833 chr5:96631662,chr5:96631662,chr5:96631657 NA NA chr5:95966539,chr5:95966538,chr5:95966537 chr5:95967366,chr5:95967366,chr5:95967361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 9 1 9 1 ONLY_REF_SPLICE YES_LDAS 0.1441 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29471 NECAP2::ERC2 ENSG00000157191.20::ENSG00000187672.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1144 TRUE 430 NECAP2 ENSG00000157191.20 protein_coding + + chr1:16440721-16460078:+ chr1:16449201:+ chr1:16767216-16786573:+ chr1:16775696:+ ERC2 ENSG00000187672.15 protein_coding - - chr3:55508311-56469095:- chr3:55734914:- chr3:55542339-56503123:- chr3:55768942:- chr1:16451651,chr1:16451652 chr3:55797708,chr3:55797707 NA NA chr1:16778146,chr1:16778147 chr3:55831736,chr3:55831735 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF1681|6-162|2.7e-65 none ["ERC2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr3] 9 7 9 1.85 ONLY_REF_SPLICE YES_LDAS 0.1564 GT 1.8323 AG 1.9656 ENST00000337132.10 1-489 ENST00000492584.3 2593-2898 chr1|+|[0]16440762-16440853[1]|[2]16443632-16443732[0]|[1]16447870-16447974[0]|[1]16448060-16448141[1]|[2]16449093-16449201[2]<==>chr3|-|[2]55683833-55683859[0]|[2]55699378-55699512[0]|[2]55734771-55734914[0] atggaggagagcgggtacgagtcggtgctctgtgtcaagcctgacgtccacgtctaccgcatccctccgcgggctaccaaccgtggctacagggctgcggagtggcagctggaccagccatcatggagtggccggctgaggatcactgcaaagggacagatggcctacatcaagctggaggacaggacgtcaggggagctctttgctcaggccccggtggatcagtttcctggcacagctgtggagagtgtgacggattccagcaggtacttcgtgatccgcatcgaagatggaaatgggcgacgggcgtttattggaattggcttcggggaccgaggtgatgcctttgacttcaatgttgcattgcaggaccatttcaagtgggtgaaacagcagtgtgaatttgcaaaacaagcccagaacccagaccaaggccctaaactggacctgggcttcaaggagggccagaccatcaagctcaacatcgcaGAAGCACTACTTGCAGCCATCAGTGAAAAAGATGCAAACATTGCCTTGCTGGAATTGTCTGCCTCCAAAAAGAAAAAGACGCAGGAAGAAGTCATGGCCCTCAAGCGGGAAAAAGACCGACTAGTACATCAATTAAAGCAGCAGACCCAGAACAGAATGAAGTTGATGGCAGACAACTATGATGATGACCATCACCATTACCACCACCACCACCATCACCACCACCATCGATCTCCTGGGAGGTCGCAACATTCCAATCACAGGCCCTCTCCGGACCAGGATGACGAGGAGGGCATATGGGCATAG MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIAEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADNYDDDHHHYHHHHHHHHHRSPGRSQHSNHRPSPDQDDEEGIWA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29472 FBXL20::RFX2 ENSG00000108306.13::ENSG00000087903.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6078334:- chr19:5993175-6199583:- chr19:6078345:- chr17:39401853,chr17:39401853,chr17:39401858 chr19:6085869,chr19:6085858,chr19:6085871 NA NA chr17:37558106,chr17:37558106,chr17:37558111 chr19:6085880,chr19:6085869,chr19:6085882 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RFX2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr19] 8 0 8 0 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29473 C10orf95-AS1::PRXL2A ENSG00000269609.6::ENSG00000122378.14 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 644 FALSE NA FALSE NA C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102450330:+ chr10:104209573-104220863:+ chr10:104210087:+ PRXL2A ENSG00000122378.14 protein_coding + + chr10:80407829-80437115:+ chr10:80420466:+ chr10:82167585-82196871:+ chr10:82180222:+ chr10:102458586,chr10:102458585 chr10:80419462,chr10:80419458 NA NA chr10:104218343,chr10:104218342 chr10:82179218,chr10:82179214 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 1 8 0.5 ONLY_REF_SPLICE YES_LDAS 0.1225 GT 1.371 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29475 SLC7A6::PLA2G15 ENSG00000103064.15::ENSG00000103066.13 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 630 FALSE NA FALSE NA SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68264576:+ chr16:68298419-68335726:+ chr16:68298479:+ PLA2G15 ENSG00000103066.13 protein_coding + + chr16:68245304-68261058:+ chr16:68259146:+ chr16:68279207-68294961:+ chr16:68293049:+ chr16:68269279,chr16:68269279,chr16:68269279,chr16:68269274 chr16:68255295,chr16:68255296,chr16:68255298,chr16:68255287 NA NA chr16:68303182,chr16:68303182,chr16:68303182,chr16:68303177 chr16:68289198,chr16:68289199,chr16:68289201,chr16:68289190 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.00Mb];LOCAL_REARRANGEMENT:+:[3454] 7 0 7 0 ONLY_REF_SPLICE YES_LDAS 0.1008 GT 1.6895 AG 1.5301 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 68300624 FALSE 68288822 FALSE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29476 FAM104A::CPSF4L ENSG00000133193.13::ENSG00000187959.9 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 628 TRUE 1138 TRUE 426 FAM104A ENSG00000133193.13 protein_coding - - chr17:73207353-73236753:- chr17:73232086:- chr17:71203492-71232892:- chr17:71228225:- CPSF4L ENSG00000187959.9 protein_coding - - chr17:73248449-73262352:- chr17:73252723:- chr17:71244588-71258491:- chr17:71248862:- chr17:73229637,chr17:73229640 chr17:73262125,chr17:73262125 NA NA chr17:71225776,chr17:71225779 chr17:71258264,chr17:71258264 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FAM104|74-186|4.5e-56 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[11696] 7 5 7 0.28 ONLY_REF_SPLICE YES_LDAS 0.1048 GT 1.6402 AG 1.9219 ENST00000403627.7 1-221 ENST00000397671.1 215-459 chr17|-|[1]73232086-73232306[0]<==>chr17|-|[2]73250276-73250291[2]|[1]73250973-73251107[2]|[1]73252630-73252723[1] atgggggggcgcggagcagacgccggaagtagtggtggtacgggtccgactgaggggtactcgccaccggctgcgtccacccgagcggctgcgagagccaaggcccgagggggtgggcgtggcggccgccgaaacacaaccccctctgttccctctcttcgcggagcggcgccgcgtagcttccatccgccagctgccatgagcgagcgcctccgtcccagGTCCTCTGTGTAAATACCGCCATGTCCCCAGAATAATGTGTCTCAACTATTTAGTTGGCTTCTGCCCCGAGGGACCCAAGTGCCAATTTGCTCACTGTAGCTTGCCAGCCGGCCCCGGGATTCAGCACCTCCTATTTCTGCTGTGGAAGCTTGGAAACCCCCATCCCCAACAGAGTGCCTGCTCTCCTGCCTGGGGATCAGGGGTCAAGGGCAGGGCCTGTGCCACAGGGCCATTATGCCAGTAA MGGRGADAGSSGGTGPTEGYSPPAASTRAAARAKARGGGRGGRRNTTPSVPSLRGAAPRSFHPPAAMSERLRPRSSV*IPPCPQNNVSQLFSWLLPRGTQVPICSL*LASRPRDSAPPISAVEAWKPPSPTECLLSCLGIRGQGQGLCHRAIMPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29478 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 640 TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767395:- chr19:12873817-12983554:- chr19:12878209:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551239:+ chr11:66313866-66330805:+ chr11:66318710:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HOOK_N|7-152|8.9e-76^HOOK|192-701|1.7e-206^T2SSF|267-332|0.00042^T2SSF|280-368|0.0045^DUF6236|318-383|0.17^DUF6236|484-535|0.0013^DUF6236|555-621|7.8e-05 CH-PARTIAL|~148-149|3.4e-25^CH|159-264|9.4e-35^CAMSAP_CH|179-243|2.6e-06^Peptidase_C101|209-290|0.13^BLOC1_2|282-298|1.4^Spectrin|289-397|8.8e-14^CH|298-307|7.3^Peptidase_C101|404-478|0.036^Spectrin|408-512|1.2e-26^AIF-1|419-456|3.7^PRP9_N|441-464|3.6^BLOC1_2|471-524|0.11^Spectrin|525-634|2.4e-18^Peptidase_C101|589-622|0.0062^PRP9_N|623-724|3.2e-05^Peptidase_C101|643-710|0.56^Spectrin|645-746|2.6e-14^BLOC1_2|674-705|0.005^PRP9_N|751-776|3.1^AIF-1|758-826|4.6e-05^EF-hand_1|764-791|1.3e-05^EF-hand_6|764-793|8.9e-07^EF-hand_8|764-789|0.03^EF-hand_7|766-826|5.2e-09^EF-hand_8|778-827|2.4e-05^EF-hand_1|800-827|0.00072^EF-hand_6|803-826|4.4^EFhand_Ca_insen|831-897|1.3e-28^EF-hand_6|842-859|0.15^EF-hand_7|849-859|7.4^EF-hand_8|849-859|0.64^EF-hand_1|851-858|1.8 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr11] 7 8 7 3.49 ONLY_REF_SPLICE YES_LDAS 0.1511 GT 1.8323 AG 1.8892 ENST00000264827.9 1-1373 ENST00000513398.2 148-2706 chr19|-|[1]12767395-12767464[1]|[0]12767816-12767903[0]|[2]12768013-12768123[0]|[2]12769881-12770082[2]|[1]12770932-12771072[2]|[1]12771159-12771319[0]|[2]12771397-12771477[0]|[2]12772190-12772252[0]|[2]12772613-12772680[1]|[0]12772780-12772912[0]|[2]12772994-12773044[0]|[2]12774669-12774741[2]|[1]12774812-12774897[0]|[2]12775405-12775449[0]<==>chr11|+|[0]66551239-66551353[0]|[1]66551528-66551647[0]|[1]66554045-66554131[0]|[1]66554536-66554623[1]|[2]66555130-66555208[2]|[0]66555286-66555367[0]|[1]66556145-66556230[2]|[0]66557133-66557225[2]|[0]66557699-66557929[2]|[0]66558027-66558174[0]|[1]66559236-66559386[1]|[2]66559968-66560076[2]|[0]66560171-66560311[2]|[0]66560573-66560755[2]|[0]66561227-66561361[2]|[0]66561458-66561637[2]|[0]66562022-66562168[2]|[0]66562257-66562322[2]|[0]66562796-66562954[2]|[0]66563035-66563193[2] atgagcgtggacaaagctgagctatgcgggtctctgctcacctggttacagacgttccacgttccgtctccctgtgccagccctcaggacctgagcagcggccttgccgtagcctatgtgctgaaccagatagacccctcctggttcaacgaggcatggctccagggcatctcggaagatccaggtcccaactggaagctgaaggtcagcaatctgaagatggtcttacggagcctagtagagtactcccaggatgtcctggcgcatcctgtgtcagaagagcatctcccagatgtgagcctcattggagagttctcagacccggcagagctcggcaagctgcttcagctggtgctgggctgtgccatcagttgcgagaaaaagcaggaccacatccagagaatcatgacgctggaagaatcggttcagcatgtggtgatggaagccatccaagagctcatgaccaaagacactcctgactccctgtcaccagagacgtatggcaactttgacagccagtcccgcaggtactatttcctaagtgaggaggctgaggagggggacgaattacagcagcgctgtctggatctggagcggcagctgatgctcctgtcagaggagaagcagagcctggcgcaagagaatgcagggctgcgggagcggatgggccggcctgaaggcgagggtaccccaggtctcactgccaagaagctgctgctgctgcaatcccagctggagcagttgcaggaggagaacttcaggctggagagtggcagggaggatgagcgcctgcgctgtgccgagctggagagggaggttgcggagctgcagcaccggaaccaggcgctgactagcctggcccaggaggcacaggccctgaaggatgagatggatgaactacggcagtcttcggagcgtgctgggcagctggaggccacgctgaccagttgccggcgccgcttgggcgagctgagggagctgcggcggcaggtgcggcagctggaggaacgcaacgccggccacgccgagcgcacgcgacaactggaggatgagctacgccgagcgggctccctgcgcgcccagctggaggcgcagcggcggcaggtgcaggaactgcagggccagcggcaggaggaggccatgaaggccgagaaatggctatttgaatgccgcaacctggaggaaaagtatgagtcggtgacaaaggagaaggagcggctgttggcggagcgggactccttgcgggaggccaatgaggagctgcgctgcgcccagctgcagccgcgggggttgacccaggccgatccctcactggatcccacctccacacccgtggataacttagccgcagagatcctgcctgcggagctcagACCTTCACTGCCTGGTGCAACTCACACCTGCGCAAGGCAGGCACCCAGATCGAGAACATCGAGGAAGATTTCCGCAATGGCCTCAAACTCATGCTGCTCCTGGAGGTCATTTCAGGTGAGAGGCTGCCTAGGCCAGATAAAGGCAAGATGCGCTTCCACAAAATCGCCAACGTTAACAAGGCCCTGGACTTCATTGCCAGCAAGGGGGTTAAACTGGTGTCCATTGGTGCTGAAGAGATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTTCGCTTCGCCATCCAGGACATCTCTGTGGAAGAAACCTCAGCCAAGGAAGGCTTGCTTCTGTGGTGCCAGAGGAAGACAGCACCGTACCGCAACGTCAACGTGCAGAACTTCCACACCAGCTGGAAGGATGGCCTGGCCCTCTGTGCCCTCATCCACCGACACCGCCCTGACCTCATCGACTACGCCAAACTGCGAAAGGATGACCCCATCGGAAACCTGAACACTGCCTTTGAGGTGGCAGAGAAATACCTGGACATCCCCAAGATGTTGGATGCAGAAGACATTGTGAACACCCCAAAGCCGGATGAGAAGGCCATCATGACCTATGTGTCCTGCTTCTACCATGCCTTTGCCGGGGCTGAGCAGGCAGAGACAGCTGCCAACAGGATCTGCAAGGTGCTGGCAGTGAACCAGGAAAACGAGAAGCTGATGGAGGAGTATGAGAAGCTTGCCAGTGAGCTGCTGGAGTGGATCCGCCGCACTGTCCCATGGCTGGAGAACCGTGTGGGTGAGCCCAGCATGAGTGCCATGCAGCGCAAACTAGAGGACTTTCGGGACTACCGGCGTCTGCACAAGCCGCCCCGCATTCAGGAAAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTTGCGGCTCAGCCACCGGCCTGCCTTCATGCCCTCCGAGGGCAAGCTGGTCTCGGACATCGCCAACGCCTGGCGGGGGCTGGAGCAGGTGGAAAAGGGCTATGAGGACTGGCTGCTCTCGGAGATCCGGCGCCTGCAGCGACTCCAGCACCTGGCTGAGAAGTTCCGGCAGAAGGCCTCCCTGCACGAAGCCTGGACCCGGGGAAAGGAGGAGATGCTGAGCCAGCGCGACTACGATTCGGCTTTGCTACAGGAGGTGCGGGCGTTGCTGCGGCGCCACGAGGCCTTTGAGAGCGACCTGGCGGCGCACCAGGACCGCGTGGAGCACATTGCCGCGCTGGCCCAGGAGCTCAATGAGCTGGACTACCACGAGGCAGCCTCAGTGAATAGCCGCTGCCAGGCCATCTGCGATCAGTGGGACAACCTGGGCACCCTGACCCAGAAGAGGCGGGATGCGCTAGAGCGGATGGAGAAGCTCCTGGAGACCATTGACCGGCTGCAACTGGAGTTTGCCCGGCGGGCCGCGCCCTTCAACAACTGGCTGGATGGTGCCGTGGAGGACCTGCAGGACGTGTGGCTGGTACACTCTGTGGAGGAGACCCAGAGCCTGCTGACAGCGCACGATCAGTTCAAGGCAACACTGCCCGAGGCTGACCGAGAGCGAGGTGCCATCATGGGCATCCAGGGTGAGATCCAGAAGATCTGCCAGACGTATGGGCTGCGGCCCTGCTCCACCAATCCCTACATCACCCTCAGCCCGCAGGACATCAACACCAAGTGGGATATGGTCCGAAAGCTGGTGCCCAGCTGTGACCAGACACTGCAGGAGGAGCTGGCACGGCAGCAGGTAAACGAGAGGCTCCGGCGACAGTTTGCGGCCCAGGCCAATGCCATTGGACCCTGGATCCAGGCGAAGGTGGAGGAAGTGGGGCGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCTGGGCTACGGCAGCAGGAGCAGAACATTATCAACTACAAGACTAACATTGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTGGTGTTCGACAATAAGCACACCGTCTACAGCATGGAGCACATCCGCGTGGGCTGGGAGCAGCTGCTCACCTCCATTGCCCGCACCATCAATGAAGTGGAGAACCAGGTACTGACCCGAGACGCCAAGGGACTGAGCCAGGAGCAGCTCAACGAGTTCCGAGCATCCTTCAACCACTTTGACAGGAAGCAGAATGGGATGATGGAGCCTGATGACTTCCGAGCTTGCCTCATCTCCATGGGCTATGACCTGGGGGAAGTGGAGTTTGCTCGCATCATGACCATGGTGGACCCCAACGCAGCTGGGGTGGTGACCTTCCAGGCCTTCATAGACTTCATGACCCGAGAGACAGCCGAGACTGACACGACTGAGCAAGTTGTAGCTTCCTTCAAGATCTTGGCAGGAGACAAGAACTACATCACCCCCGAGGAGCTGCGGCGCGAGCTCCCTGCCAAGCAGGCCGAGTACTGCATCCGCCGTATGGTGCCCTACAAGGGATCCGGGGCCCCGGCTGGAGCCCTGGACTACGTGGCCTTCTCCAGTGCCCTCTATGGGGAGAGCGACCTTTGA MSVDKAELCGSLLTWLQTFHVPSPCASPQDLSSGLAVAYVLNQIDPSWFNEAWLQGISEDPGPNWKLKVSNLKMVLRSLVEYSQDVLAHPVSEEHLPDVSLIGEFSDPAELGKLLQLVLGCAISCEKKQDHIQRIMTLEESVQHVVMEAIQELMTKDTPDSLSPETYGNFDSQSRRYYFLSEEAEEGDELQQRCLDLERQLMLLSEEKQSLAQENAGLRERMGRPEGEGTPGLTAKKLLLLQSQLEQLQEENFRLESGREDERLRCAELEREVAELQHRNQALTSLAQEAQALKDEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRPSLPGATHTCARQAPRSRTSRKISAMASNSCCSWRSFQVRGCLGQIKARCASTKSPTLTRPWTSLPARGLNWCPLVLKRLLTGT*R*PWA*SGPSSFASPSRTSLWKKPQPRKACFCGARGRQHRTATSTCRTSTPAGRMAWPSVPSSTDTALTSSTTPNCERMTPSET*TLPLRWQRNTWTSPRCWMQKTL*TPQSRMRRPS*PMCPASTMPLPGLSRQRQLPTGSARCWQ*TRKTRS*WRSMRSLPVSCWSGSAALSHGWRTVWVSPA*VPCSAN*RTFGTTGVCTSRPAFRKSASWRSTSTHCRPSCGSATGLPSCPPRASWSRTSPTPGGGWSRWKRAMRTGCSRRSGACSDSSTWLRSSGRRPPCTKPGPGERRRC*ASATTIRLCYRRCGRCCGATRPLRATWRRTRTAWSTLPRWPRSSMSWTTTRQPQ*IAAARPSAISGTTWAP*PRRGGMR*SGWRSSWRPLTGCNWSLPGGPRPSTTGWMVPWRTCRTCGWYTLWRRPRAC*QRTISSRQHCPRLTESEVPSWASRVRSRRSARRMGCGPAPPIPTSPSARRTSTPSGIWSESWCPAVTRHCRRSWHGSR*TRGSGDSLRPRPMPLDPGSRRRWRKWGGWQQG*LALWRSRWLGYGSRSRTLSTTRLTLTGWRVTTSCCRRAWCSTISTPSTAWSTSAWAGSSCSPPLPAPSMKWRTRY*PETPRD*ARSSSTSSEHPSTTLTGSRMG*WSLMTSELASSPWAMTWGKWSLLAS*PWWTPTQLGW*PSRPS*TS*PERQPRLTRLSKL*LPSRSWQETRTTSPPRSCGASSLPSRPSTASAVWCPTRDPGPRLEPWTTWPSPVPSMGRATF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29479 DNAAF9::NBR1 ENSG00000088854.13::ENSG00000188554.15 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 642 FALSE NA FALSE NA DNAAF9 ENSG00000088854.13 protein_coding - - chr20:3249306-3407669:- chr20:3296861:- chr20:3229952-3388316:- chr20:3277508:- NBR1 ENSG00000188554.15 protein_coding + + chr17:43170481-43211689:+ chr17:43194350:+ chr17:41322498-41363708:+ chr17:41346367:+ chr20:3296317,chr20:3296320 chr17:43193446,chr17:43193443 NA NA chr20:3276964,chr20:3276967 chr17:41345463,chr17:41345460 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SIR2_2|1062-1091|4.5e-06^SIR2_2|1143-1166|0.28 none ["NBR1:Oncogene"] 7 5 7 4.56 ONLY_REF_SPLICE YES_LDAS 0.1665 GT 1.6402 AG 1.8295 ENST00000252032.10 1-2018 ENST00000590996.6 1525-2901 chr20|-|[1]3296861-3296949[0]|[2]3298029-3298175[0]|[2]3304440-3304543[1]|[0]3315033-3315120[0]|[2]3315735-3315785[0]|[2]3316723-3316793[1]|[0]3318289-3318400[0]|[2]3322217-3322262[2]|[1]3322652-3322696[2]|[1]3324892-3324968[0]|[2]3326197-3326284[2]|[1]3330646-3330682[1]|[0]3332280-3332361[0]|[2]3340504-3340639[2]|[1]3343676-3343731[0]|[2]3348525-3348623[0]|[2]3359516-3359593[0]|[2]3374048-3374154[1]|[0]3375030-3375126[0]|[2]3376178-3376302[1]|[0]3381379-3381498[1]|[0]3382427-3382506[2]|[1]3407475-3407557[0]<==>chr17|+|[0]43194350-43194499[2]|[0]43194964-43195039[0]|[1]43196481-43196591[0]|[1]43196942-43197106[0]|[1]43200167-43200608[1]|[2]43201686-43201780[0]|[1]43202655-43202712[1]|[2]43203681-43203786[2]|[0]43209901-43210074[2] atggacgtgtaccccccgcgccggcaggggctgccccgcgctcggtcccctggcggctccagccgcgggtcaccctccgtcagctgcagtcgacttcggcaggttcagagcatcctgacccagagcagcaagtctcggccggatgggatcctctgcatcctaggaatcgatagcaggtacaatgaaggctgcagagagctggcaaattatcttctatttggtttgtacaatcagaataccagtgattttgagaaaacgggattttctgaagaagtactagatgatgtaattatattgattaaatcggatagcgtccatctgtactgtaatcctgtaaactttcgctatctcttaccttatgtggcacattggagaaatctgcatttccactgcatgaccgaaaatgagtatgaagatgaagaagccgcagaagaatttaaaattaccagctttgtggacatggttcgagactgtagtagaattggcattccttacagctcccaaggtcacttgcagatatttgatatgtttgtggtggagaaatggccaattgtacaggcctttgcacttgagggcattggaggggatggattttttaccatgaaatatgagttgcaggatgtgagtttgaatctatggaatgtctacagcaagatggatcctatgtctctggagagtttgctttcagatgatttggtggcttttgaacatcagtggactagcttcttcgctaattttgacacagaaattcctttcctgctagaactttcagaatctcaggcgggtgagccattcagaagttatttcagtcatggaatgatctctagccatataactgaaaacagccctaaccggcagccatttgttctctttggtaatcactccacacgagaaaacctgaatgctggcaactttaacttcccttctgaaggacatctggtacgaagcactggtcccggcgggagctttgccaagcacatggtagcccagtgtgtctcaccaaagggacctcttgcttgttcgagaacatacttttttggagctactcatgttccttacttgggtggtgacagcaagctgcccaagaaaactgaacaaattaggctattgtcccagatatatgctgctgttattgaggctgttttggctggcattgcatgttatgctaaaacttccagtctaacaaaggccaaggaggtagcagagcaaactctgggatctgggttagattcctttgagttgattccgtttaaggcagccctgcgctccaagatgacttttcatatacatgctgtgaataatcagggaagaattgtaccgctggacagtgaagatagcttatcctttgtgaagacggcttgtatggccgtctatgacattcctgacttactgggaggcaatggttgtttaggatctgtggttttctctgaatcatttttgacttctcagatcttagttaaagaaaaggatggcactgttaccacagaaaccagctccgtagtcctgactgctgctgtacccagattctgctcctggctggtggaagataatgaagtaaaattgtctgagaaaacccagcaagcagtgaggggggatgagtctttcctgggcacttatctaacaggaggagaaggagcatatctttattccagcaatctacagtcctggcctgaggaagggaatgttcatttcttctctagtggccttctgttttctcactgtcgtcatagaagtatcatcatttccaaggatcacatgaattccatttccttctatgatggggattccaccagtactgttgctgctcttctcatagacttcaaaagctcattgcttcctcacctcccagttcatttccatggatcaagcaattttctgatgattgcccttttccccaaatcgaagatataccaagcattttactcagaggtcttctccctctggaaacagcaggataactcagggatctctttaaaagtgatccaggaagatggattatctgtggaacaaaagagattGAAACTTTTCTTCTGGCTAAAGAAGAAAGACAGCTTGGTGAAGTGACTGAGCAGACAGAAGGGACAGCAGCCTGCATCCCACAGAAGGCAAAAAATGTTGCCAGTGAGAGGGAGCTCTACATCCCATCTGTGGATCTTCTGACTGCCCAGGACCTGCTGTCCTTTGAGCTGTTGGATATAAACATTGTTCAAGAGTTGGAGAGAGTGCCCCACAACACCCCTGTGGATGTGACTCCCTGCATGTCTCCTCTGCCACATGACAGTCCTTTAATAGAGAAGCCAGGCTTGGGGCAGATAGAGGAAGAGAATGAAGGGGCAGGATTTAAAGCACTTCCTGATTCTATGGTGTCAGTAAAGAGGAAGGCTGAGAACATTGCTTCTGTGGAGGAAGCAGAAGAAGACCTGAGTGGGACCCAGTTTGTGTGTGAGACAGTAATCCGATCCCTTACCTTGGATGCTGCCCCAGACCACAACCCTCCTTGCAGACAGAAGTCCTTGCAGATGACATTTGCCTTGCCTGAAGGACCACTTGGAAATGAGAAGGAGGAGATTATCCATATCGCTGAGGAAGAAGCTGTCATGGAGGAGGAGGAGGATGAGGAGGATGAGGAGGAGGAGGATGAGCTCAAAGATGAAGTTCAAAGTCAGTCCTCTGCTTCCTCAGAGGATTACATCATCATCCTGCCTGAGTGCTTTGATACCAGCCGCCCCCTGGGGGATTCTATGTACAGCTCTGCGCTCTCACAGCCAGGCCTGGAGCGAGGTGCTGAAGGCAAGCCTGGGGTTGAGGCTGGGCAGGAACCAGCTGAGGCTGGGGAAAGACTCCCTGGAGGGGAGAACCAGCCACAGGAGCACAGCATAAGTGACATCCTCACGACCTCACAGACTCTGGAAACAGTGCCCCTAATCCCAGAGGTAGTGGAGCTTCCACCGTCACTGCCCAGGAGCTCTCCTTGTGTACATCATCATGGTTCCCCAGGAGTGGATTTACCAGTTACCATACCAGAAGTTTCTTCAGTCCCTGATCAGATCAGAGGAGAGCCCAGAGGCTCATCAGGACTTGTAAACAGCAGACAGAAGAGCTATGACCACTCAAGGCACCATCATGGGAGCAGCATTGCTGGAGGACTGGTGAAGGGGGCTTTGTCTGTTGCTGCCTCTGCATACAAGGCCCTGTTTGCTGGGCCACCAGTCACTGCACAGCCAATAATTTCTGAAGATCAGACAGCAGCCCTGATGGCCCATCTCTTTGAAATGGGATTCTGTGACAGGCAGCTGAACCTACGGCTGCTGAAGAAACACAATTACAATATCCTGCAGGTTGTGACAGAACTTCTTCAGTTAAACAACAACGACTGGTACAGCCAACGCTATTGA MDVYPPRRQGLPRARSPGGSSRGSPSVSCSRLRQVQSILTQSSKSRPDGILCILGIDSRYNEGCRELANYLLFGLYNQNTSDFEKTGFSEEVLDDVIILIKSDSVHLYCNPVNFRYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKITSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYELQDVSLNLWNVYSKMDPMSLESLLSDDLVAFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPNRQPFVLFGNHSTRENLNAGNFNFPSEGHLVRSTGPGGSFAKHMVAQCVSPKGPLACSRTYFFGATHVPYLGGDSKLPKKTEQIRLLSQIYAAVIEAVLAGIACYAKTSSLTKAKEVAEQTLGSGLDSFELIPFKAALRSKMTFHIHAVNNQGRIVPLDSEDSLSFVKTACMAVYDIPDLLGGNGCLGSVVFSESFLTSQILVKEKDGTVTTETSSVVLTAAVPRFCSWLVEDNEVKLSEKTQQAVRGDESFLGTYLTGGEGAYLYSSNLQSWPEEGNVHFFSSGLLFSHCRHRSIIISKDHMNSISFYDGDSTSTVAALLIDFKSSLLPHLPVHFHGSSNFLMIALFPKSKIYQAFYSEVFSLWKQQDNSGISLKVIQEDGLSVEQKRLKLFFWLKKKDSLVK*LSRQKGQQPASHRRQKMLPVRGSSTSHLWIF*LPRTCCPLSCWI*TLFKSWRECPTTPLWM*LPACLLCHMTVL**RSQAWGR*RKRMKGQDLKHFLILWCQ*RGRLRTLLLWRKQKKT*VGPSLCVRQ*SDPLPWMLPQTTTLLADRSPCR*HLPCLKDHLEMRRRRLSISLRKKLSWRRRRMRRMRRRRMSSKMKFKVSPLLPQRITSSSCLSALIPAAPWGILCTALRSHSQAWSEVLKASLGLRLGRNQLRLGKDSLEGRTSHRSTA*VTSSRPHRLWKQCP*SQR*WSFHRHCPGALLVYIIMVPQEWIYQLPYQKFLQSLIRSEESPEAHQDL*TADRRAMTTQGTIMGAALLEDW*RGLCLLLPLHTRPCLLGHQSLHSQ*FLKIRQQP*WPISLKWDSVTGS*TYGC*RNTITISCRL*QNFFS*TTTTGTANAI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29480 HOOK2::ACTN3 ENSG00000095066.12::ENSG00000248746.6 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 639 TRUE 1151 TRUE 437 HOOK2 ENSG00000095066.12 protein_coding - - chr19:12763003-12872740:- chr19:12767395:- chr19:12873817-12983554:- chr19:12878209:- ACTN3 ENSG00000248746.6 protein_coding + + chr11:66546395-66563334:+ chr11:66551053:+ chr11:66313866-66330805:+ chr11:66318524:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HOOK_N|7-152|8.9e-76^HOOK|192-701|1.7e-206^T2SSF|267-332|0.00042^T2SSF|280-368|0.0045^DUF6236|318-383|0.17^DUF6236|484-535|0.0013^DUF6236|555-621|7.8e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr11] 7 9 7 4.72 ONLY_REF_SPLICE YES_LDAS 0.1688 GT 1.8323 AG 1.6729 ENST00000264827.9 1-1373 ENST00000511191.1 148-219 chr19|-|[1]12767395-12767464[1]|[0]12767816-12767903[0]|[2]12768013-12768123[0]|[2]12769881-12770082[2]|[1]12770932-12771072[2]|[1]12771159-12771319[0]|[2]12771397-12771477[0]|[2]12772190-12772252[0]|[2]12772613-12772680[1]|[0]12772780-12772912[0]|[2]12772994-12773044[0]|[2]12774669-12774741[2]|[1]12774812-12774897[0]|[2]12775405-12775449[0]<==>chr11|+|[0]66551053-66551124[2] atgagcgtggacaaagctgagctatgcgggtctctgctcacctggttacagacgttccacgttccgtctccctgtgccagccctcaggacctgagcagcggccttgccgtagcctatgtgctgaaccagatagacccctcctggttcaacgaggcatggctccagggcatctcggaagatccaggtcccaactggaagctgaaggtcagcaatctgaagatggtcttacggagcctagtagagtactcccaggatgtcctggcgcatcctgtgtcagaagagcatctcccagatgtgagcctcattggagagttctcagacccggcagagctcggcaagctgcttcagctggtgctgggctgtgccatcagttgcgagaaaaagcaggaccacatccagagaatcatgacgctggaagaatcggttcagcatgtggtgatggaagccatccaagagctcatgaccaaagacactcctgactccctgtcaccagagacgtatggcaactttgacagccagtcccgcaggtactatttcctaagtgaggaggctgaggagggggacgaattacagcagcgctgtctggatctggagcggcagctgatgctcctgtcagaggagaagcagagcctggcgcaagagaatgcagggctgcgggagcggatgggccggcctgaaggcgagggtaccccaggtctcactgccaagaagctgctgctgctgcaatcccagctggagcagttgcaggaggagaacttcaggctggagagtggcagggaggatgagcgcctgcgctgtgccgagctggagagggaggttgcggagctgcagcaccggaaccaggcgctgactagcctggcccaggaggcacaggccctgaaggatgagatggatgaactacggcagtcttcggagcgtgctgggcagctggaggccacgctgaccagttgccggcgccgcttgggcgagctgagggagctgcggcggcaggtgcggcagctggaggaacgcaacgccggccacgccgagcgcacgcgacaactggaggatgagctacgccgagcgggctccctgcgcgcccagctggaggcgcagcggcggcaggtgcaggaactgcagggccagcggcaggaggaggccatgaaggccgagaaatggctatttgaatgccgcaacctggaggaaaagtatgagtcggtgacaaaggagaaggagcggctgttggcggagcgggactccttgcgggaggccaatgaggagctgcgctgcgcccagctgcagccgcgggggttgacccaggccgatccctcactggatcccacctccacacccgtggataacttagccgcagagatcctgcctgcggagctcagGAAAACGAAAGCTCAGAGAGGGAAAGGGACTGGCCCAGGATGCACAGCAAGTCAGTGGCTGAGCTGAGCTGA MSVDKAELCGSLLTWLQTFHVPSPCASPQDLSSGLAVAYVLNQIDPSWFNEAWLQGISEDPGPNWKLKVSNLKMVLRSLVEYSQDVLAHPVSEEHLPDVSLIGEFSDPAELGKLLQLVLGCAISCEKKQDHIQRIMTLEESVQHVVMEAIQELMTKDTPDSLSPETYGNFDSQSRRYYFLSEEAEEGDELQQRCLDLERQLMLLSEEKQSLAQENAGLRERMGRPEGEGTPGLTAKKLLLLQSQLEQLQEENFRLESGREDERLRCAELEREVAELQHRNQALTSLAQEAQALKDEMDELRQSSERAGQLEATLTSCRRRLGELRELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQVQELQGQRQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCAQLQPRGLTQADPSLDPTSTPVDNLAAEILPAELRKTKAQRGKGTGPGCTASQWLS*A FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29483 TBC1D22A::GRAMD4 ENSG00000054611.14::ENSG00000075240.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 637 TRUE 1148 TRUE 434 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46797620:+ chr22:47158514-47571342:+ chr22:47193517:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46677147:+ chr22:46971909-47075687:+ chr22:47073044:+ chr22:46848901,chr22:46848905,chr22:46848902 chr22:46674725,chr22:46674728,chr22:46674723 NA NA chr22:47244798,chr22:47244802,chr22:47244799 chr22:47070622,chr22:47070625,chr22:47070620 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.08Mb];LOCAL_REARRANGEMENT:+:[82827] 5 8 5 3.08 ONLY_REF_SPLICE YES_LDAS 0.1164 GT 1.8892 AG 1.5656 ENST00000394449.6 1-637 ENST00000408031.1 202-306 chr22|+|[0]46762787-46762848[1]|[2]46792520-46792576[1]|[2]46793501-46793841[0]|[1]46797444-46797620[0]<==>chr22|+|[0]46677147-46677251[2] atggccagcgacggggccaggaagcaattctggaagcgcagcaacagcaagctcccgggcagcatccagcacgtgtatggtgcccagcaccccccctttgatccactgttacatggcactttgctcaggtccacggccaagatgccgaccacaccagtgaaggccaagagggtcagcaccttccaggagtttgagagcaataccagcgatgcctgggacgctggggaggacgacgatgagctcctggccatggcggcggagagcctgaactccgaggtggtcatggagacggccaaccgtgtgctgcgtaaccacagccagcggcaggggcggcccacgctgcaggaggggccagggcttcagcagaagcccaggcccgaggcagagccgccctcaccccccagcggcgacctccggctggtgaagtcggtcagtgagagccacacgtcctgtcctgcagaaagtgccagcgatgccgcccctctgcagaggtcccagtctctcccacactcggccaccgtcacgctgggtggcacatctgaccccagcactctcagcagctcagcgctgagcgaaagagaggcctcccggctcgacaagttcaagcagctgcttgccggccccaacacggaccttgCCGCTCGTGTTTGGTGCCATGGTGCACAGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAGCGGCAGCGTCTGGCGGGGACAGCTAG MASDGARKQFWKRSNSKLPGSIQHVYGAQHPPFDPLLHGTLLRSTAKMPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSEVVMETANRVLRNHSQRQGRPTLQEGPGLQQKPRPEAEPPSPPSGDLRLVKSVSESHTSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDLAARVWCHGAQG*GLRDHSQPVHQDHLSGSVWRGQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER no_match 47193517,47308084 TRUE,FALSE 47022648,47022648 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29484 TBC1D22A::GRAMD4 ENSG00000054611.14::ENSG00000075240.17 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 636 TRUE 1148 TRUE 434 TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46797620:+ chr22:47158514-47571342:+ chr22:47193517:+ GRAMD4 ENSG00000075240.17 protein_coding + + chr22:46576012-46679790:+ chr22:46676600:+ chr22:46971909-47075687:+ chr22:47072497:+ chr22:46848901,chr22:46848905,chr22:46848902 chr22:46674725,chr22:46674728,chr22:46674723 NA NA chr22:47244798,chr22:47244802,chr22:47244799 chr22:47070622,chr22:47070625,chr22:47070620 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.08Mb];LOCAL_REARRANGEMENT:+:[82827] 5 10 5 5.77 ONLY_REF_SPLICE YES_LDAS 0.1551 GT 1.8892 AG 1.9656 ENST00000394449.6 1-637 ENST00000408031.1 133-306 chr22|+|[0]46762787-46762848[1]|[2]46792520-46792576[1]|[2]46793501-46793841[0]|[1]46797444-46797620[0]<==>chr22|+|[0]46676600-46676668[2]|[0]46677147-46677251[2] atggccagcgacggggccaggaagcaattctggaagcgcagcaacagcaagctcccgggcagcatccagcacgtgtatggtgcccagcaccccccctttgatccactgttacatggcactttgctcaggtccacggccaagatgccgaccacaccagtgaaggccaagagggtcagcaccttccaggagtttgagagcaataccagcgatgcctgggacgctggggaggacgacgatgagctcctggccatggcggcggagagcctgaactccgaggtggtcatggagacggccaaccgtgtgctgcgtaaccacagccagcggcaggggcggcccacgctgcaggaggggccagggcttcagcagaagcccaggcccgaggcagagccgccctcaccccccagcggcgacctccggctggtgaagtcggtcagtgagagccacacgtcctgtcctgcagaaagtgccagcgatgccgcccctctgcagaggtcccagtctctcccacactcggccaccgtcacgctgggtggcacatctgaccccagcactctcagcagctcagcgctgagcgaaagagaggcctcccggctcgacaagttcaagcagctgcttgccggccccaacacggaccttgTACAAGGTCCTGTCTGTCCTCCCAGGCTCAGGCATGGGGATTGCCGTGTCGACGCCATCCACCCAGAAACCGCTCGTGTTTGGTGCCATGGTGCACAGGGATGAGGCCTTCGAGACCATTCTCAGCCAGTACATCAAGATCACCTCAGCGGCAGCGTCTGGCGGGGACAGCTAG MASDGARKQFWKRSNSKLPGSIQHVYGAQHPPFDPLLHGTLLRSTAKMPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSEVVMETANRVLRNHSQRQGRPTLQEGPGLQQKPRPEAEPPSPPSGDLRLVKSVSESHTSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDLVQGPVCPPRLRHGDCRVDAIHPETARVWCHGAQG*GLRDHSQPVHQDHLSGSVWRGQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Breast invasive carcinoma,Liver hepatocellular carcinoma BREAST,LIVER no_match 47193517,47308084 TRUE,FALSE 47022648,47022648 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29485 IL1R1::LINC01127 ENSG00000115594.12::ENSG00000281162.4 SKOV3 SRR8615505 SRR8670772 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 641 FALSE NA FALSE NA IL1R1 ENSG00000115594.12 protein_coding + + chr2:102064544-102179874:+ chr2:102104872:+ chr2:102681004-102796334:+ chr2:102721332:+ LINC01127 ENSG00000281162.4 lncRNA + + chr2:101962052-101987167:+ chr2:101983692:+ chr2:102578514-102603629:+ chr2:102600154:+ chr2:102141643,chr2:102141641 chr2:101973572,chr2:101973567 NA NA chr2:102758103,chr2:102758101 chr2:102590034,chr2:102590029 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr2:0.08Mb];LOCAL_REARRANGEMENT:+:[77377] 5 7 5 6.79 ONLY_REF_SPLICE YES_LDAS 0.1698 GT 1.7056 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29488 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 648 TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158713800:+ chr6:159071046-159185908:+ chr6:159134832:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CIMR|52-86|8.9e-05^ATG27|55-164|2.9e-05^Man-6-P_recep|58-162|0.22^CIMR|127-265|1.5e-20^PRKCSH_1|128-167|0.06^ATG27|172-326|4.1e-08^CIMR|281-420|2.6e-22^PRKCSH_1|303-326|0.075^Man-6-P_recep|327-476|3.7e-11^ATG27|358-472|0.00016^MG3|359-394|0.087^PRKCSH_1|409-466|0.0031^CIMR|424-573|3.4e-55^ATG27|475-623|4e-12^Man-6-P_recep|487-620|3.9e-05^PRKCSH_1|558-618|0.00053^CIMR|576-715|1.6e-44^ATG27|625-762|1e-11^Man-6-P_recep|639-764|4.9e-09^CIMR|723-875|1.4e-33^ATG27-PARTIAL|765-882~|9.8e-10^Man-6-P_recep-PARTIAL|809-882~|0.71 C2-PARTIAL|~517-574|1e-16^BESS-PARTIAL|~517-522|0.02 ["IGF2R:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.20Mb] 178 215 178 166.32 ONLY_REF_SPLICE YES_LDAS 4.623 GT 1.6402 AG 1.8062 ENST00000677704.1 1-882 ENST00000611299.5 517-1833 chr6|+|[0]159969247-159969395[1]|[2]159991184-159991323[0]|[1]160009010-160009134[2]|[0]160010687-160010785[2]|[0]160024572-160024704[0]|[1]160027185-160027314[1]|[2]160029550-160029655[2]<==>chr6|+|[0]158713800-158713878[0]|[1]158718087-158718211[2]|[0]158725503-158725637[2]|[0]158745480-158745658[1]|[2]158751928-158752030[2]|[0]158757211-158757381[2]|[0]158760640-158760745[0]|[1]158762076-158762178[1]|[2]158763304-158763509[0]|[1]158764495-158764604[2] atgggggccgccgccggccggagcccccacctggggcccgcgcccgcccgccgcccgcagcgctctctgctcctgctgcagctgctgctgctcgtcgctgccccggggtccacgcaggcccaggccgccccgttccccgagctgtgcagttatacatgggaagctgttgataccaaaaataatgtactttataaaatcaacatctgtggaagtgtggatattgtccagtgcgggccatcaagtgctgtttgtatgcacgacttgaagacacgcacttatcattcagtgggtgactctgttttgagaagtgcaaccagatctctcctggaattcaacacaacagtgagctgtgaccagcaaggcacaaatcacagagtccagagcagcattgccttcctgtgtgggaaaaccctgggaactcctgaatttgtaactgcaacagaatgtgtgcactactttgagtggaggaccactgcagcctgcaagaaagacatatttaaagcaaataaggaggtgccatgctatgtgtttgatgaagagttgaggaagcatgatctcaatcctctgatcaagcttagtggtgcctacttggtggatgactccgatccggacacttctctattcatcaatgtttgtagagacatagacacactacgagacccaggttcacagctgcgggcctgtccccccggcactgccgcctgcctggtaagaggacaccaggcgtttgatgttggccagccccgggacggactgaagctggtgcgcaaggacaggcttgtcctgagttacgtgagggaagaggcaggaaagctagacttttgtgatggtcacagccctgcggtgactattacatttgtttgcccgtcggagcggagagagTTACAGGAATTTGGTCAGTTTAGAGGATTTAATAAGTCCGTGGAAAATTTGTTTCTGTCTCTTGCTACCCACGTGAAAAAGCTCTCCAAATCCCAGAATGATATGACTTCTGAGAAGCATCTTCTCGCCACGGGCCCCAGGCAGTGTGTGGGACAGACAGAGAGACGGAGCCAGTCTGACACTGCGGTCAACGTCACCACCAGGAAGGTCAGTGCACCAGATATTCTGAAACCTCTCAATCAAGAGGATCCCAAATGCTCTACTAACCCTATTTTGAAGCAACAGAATCTCCCATCCAGTCCGGCACCCAGTACCATATTCTCTGGAGGTTTTAGACACGGAAGTTTAATTAGCATTGACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCCATTCATTATTGCTTCAAAACCCATTCTTTAGAAATATGCATCAAGGCCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAGAAAAAGTGCAATCCGTATGTGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAACACCGTGGACCCGACCTTTCAGGAGACCTTGAAGTATCAGGTGGCCCCTGCCCAGCTGGTGACCCGGCAGCTGCAGGTCTCGGTGTGGCATCTGGGCACGCTGGCCCGGAGAGTGTTTCTTGGAGAAGTGATCATTCCTCTGGCCACGTGGGACTTTGAAGACAGCACAACACAGTCCTTCCGCTGGCATCCGCTCCGGGCCAAGGCGGAGAAATACGAAGACAGCGTTCCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAGAGGCTCAAGAAGGGACAGATCAGCCATCACTTCATGGTCAACTTTGTTTGGTAGTGCTAGGAGCCAAGAATTTACCTGTGCGGCCAGATGGCACCTTGAACTCATTTGTTAAGGGCTGTCTCACTCTGCCAGACCAACAAAAACTGAGACTGAAGTCGCCAGTCCTGAGGAAGCAGGCTTGCCCCCAGTGGAAACACTCATTTGTCTTCAGTGGCGTAACCCCAGCTCAGCTGAGGCAGTCAAGCTTGGAGTTAACTGTCTGGGATCAGGCCCTCTTTGGAATGAACGACCGCTTGCTTGGAGGAACCAGACTTGGTTCAAAGGGAGACACAGCTGTTGGCGGGGATGCATGCTCACTATCGAAGCTCCAGTGGCAGAAAGTCCTTTCCAGCCCCAATCTATGGACAGACATGACTCTTGTCCTGCACTGA MGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKNNVLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVGDSVLRSATRSLLEFNTTVSCDQQGTNHRVQSSIAFLCGKTLGTPEFVTATECVHYFEWRTTAACKKDIFKANKEVPCYVFDEELRKHDLNPLIKLSGAYLVDDSDPDTSLFINVCRDIDTLRDPGSQLRACPPGTAACLVRGHQAFDVGQPRDGLKLVRKDRLVLSYVREEAGKLDFCDGHSPAVTITFVCPSERRELQEFGQFRGFNKSVENLFLSLATHVKKLSKSQNDMTSEKHLLATGPRQCVGQTERRSQSDTAVNVTTRKVSAPDILKPLNQEDPKCSTNPILKQQNLPSSPAPSTIFSGGFRHGSLISIDSTCTEMGNFDNANVTGEIEFAIHYCFKTHSLEICIKACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGVQRNTVDPTFQETLKYQVAPAQLVTRQLQVSVWHLGTLARRVFLGEVIIPLATWDFEDSTTQSFRWHPLRAKAEKYEDSVPQSNGELTVRAKLVLPSRPRKLQEAQEGTDQPSLHGQLCLVVLGAKNLPVRPDGTLNSFVKGCLTLPDQQKLRLKSPVLRKQACPQWKHSFVFSGVTPAQLRQSSLELTVWDQALFGMNDRLLGGTRLGSKGDTAVGGDACSLSKLQWQKVLSSPNLWTDMTLVLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29489 SCML2::SH3KBP1 ENSG00000102098.19::ENSG00000147010.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 650 FALSE NA FALSE NA SCML2 ENSG00000102098.19 protein_coding - - chrX:18239313-18354688:- chrX:18320332:- chrX:18257433-18372808:- chrX:18338452:- SH3KBP1 ENSG00000147010.19 protein_coding - - chrX:19533977-19887600:- chrX:19546050:- chrX:19552095-19905718:- chrX:19564168:- chrX:18313406,chrX:18313410,chrX:18313414 chrX:19546547,chrX:19546548,chrX:19546548 NA NA chrX:18331526,chrX:18331530,chrX:18331534 chrX:19564665,chrX:19564666,chrX:19564666 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MBT|67-135|5.9e-28^MBT|176-241|4.8e-31^RBR|277-324|1.8e-17^SLED|356-465|1.5e-43 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:1.18Mb] 173 122 173 122 ONLY_REF_SPLICE YES_LDAS 3.9607 GT 1.6895 AG 1.7819 ENST00000251900.9 1-486 ENST00000699725.1 1450-1953 chrX|-|[2]18320332-18320420[1]|[0]18323859-18324093[0]|[2]18324907-18324977[1]|[0]18330587-18330655[1]|[0]18334050-18334071[0]<==>chrX|-|[2]19536417-19536458[0]|[2]19537717-19537780[2]|[1]19541925-19542193[0]|[2]19545922-19546050[0] atgggacaaacagtgaatgaagattccatggatgtcaagaaggagaatcaagagaaaactcctcagtcaagtacatcttctgtacaaagggatgatttccactgggaggagtatttgaaagagactgggtctataagtgctccttcagagtgcttccgtcagtctcagattccacctgtgaatgatttcaaagttggtatgaaattggaagcccgtgaccctcgcaatgccacttcagtatgtattgctacggttattggaattactggggccaggttacggttacgactggatggtagtgacaacagaaatgatttttggaggcttgtcgattccccagacatacaacctgttgggacatgtgaaaaggaaggagacttacttcaacctccactagggtaccagatgaatacatcctcctggccgatgttcctcttaaagacactaaatgggtctgaaatggcatctgccacattatttaagaagTCATCCCTTTCAAGCCCTGATATCTTCGACTCCCCAAGTCCCGAAGAGGATAAGGAGGAACACATTTCACTTGCGCACAGAGGAGTGGACGCGTCAAAGAAAACTTCCAAGACTGTTACCATATCCCAAGTGTCTGACAACAAAGCATCCCTGCCGCCCAAGCCGGGGACCATGGCAGCAGGTGGCGGTGGGCCAGCCCCTCTGTCCTCAGCGGCGCCCTCCCCCCTGTCATCCTCTTTGGGAACAGCTGGACACAGAGCCAACTCCCCGTCTCTGTTCGGCACGGAAGGAAAACCAAAGATGGAGCCTGCGGCCAGCAGCCAGGCGGCCGTGGAGGAGCTAAGGACACAGGTCCGCGAGCTGAGGAGCATCATCGAGACCATGAAGGACCAGCAGAAACGAGAGATTAAACAGTTATTGTCTGAGTTGGATGAAGAGAAGAAAATCCGGCTTCGGTTGCAGATGGAAGTGAACGACATAAAGAAAGCTCTACAATCAAAATGA MGQTVNEDSMDVKKENQEKTPQSSTSSVQRDDFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLKTLNGSEMASATLFKKSSLSSPDIFDSPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVSDNKASLPPKPGTMAAGGGGPAPLSSAAPSPLSSSLGTAGHRANSPSLFGTEGKPKMEPAASSQAAVEELRTQVRELRSIIETMKDQQKREIKQLLSELDEEKKIRLRLQMEVNDIKKALQSK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29490 IGF2R::SYTL3 ENSG00000197081.16::ENSG00000164674.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 649 TRUE 1165 TRUE 444 IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:160029655:+ chr6:160390114-160534539:+ chr6:160450687:+ SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158725503:+ chr6:159071046-159185908:+ chr6:159146535:+ chr6:160030419,chr6:160030417 chr6:158712677,chr6:158712672 NA NA chr6:160451451,chr6:160451449 chr6:159133709,chr6:159133704 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CIMR|52-86|8.9e-05^ATG27|55-164|2.9e-05^Man-6-P_recep|58-162|0.22^CIMR|127-265|1.5e-20^PRKCSH_1|128-167|0.06^ATG27|172-326|4.1e-08^CIMR|281-420|2.6e-22^PRKCSH_1|303-326|0.075^Man-6-P_recep|327-476|3.7e-11^ATG27|358-472|0.00016^MG3|359-394|0.087^PRKCSH_1|409-466|0.0031^CIMR|424-573|3.4e-55^ATG27|475-623|4e-12^Man-6-P_recep|487-620|3.9e-05^PRKCSH_1|558-618|0.00053^CIMR|576-715|1.6e-44^ATG27|625-762|1e-11^Man-6-P_recep|639-764|4.9e-09^CIMR|723-875|1.4e-33^ATG27-PARTIAL|765-882~|9.8e-10^Man-6-P_recep-PARTIAL|809-882~|0.71 none ["IGF2R:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.20Mb] 160 129 160 48.68 ONLY_REF_SPLICE YES_LDAS 2.8018 GT 1.6402 AG 1.9329 ENST00000677704.1 1-882 ENST00000611299.5 721-1833 chr6|+|[0]159969247-159969395[1]|[2]159991184-159991323[0]|[1]160009010-160009134[2]|[0]160010687-160010785[2]|[0]160024572-160024704[0]|[1]160027185-160027314[1]|[2]160029550-160029655[2]<==>chr6|+|[0]158725503-158725637[2]|[0]158745480-158745658[1]|[2]158751928-158752030[2]|[0]158757211-158757381[2]|[0]158760640-158760745[0]|[1]158762076-158762178[1]|[2]158763304-158763509[0]|[1]158764495-158764604[2] atgggggccgccgccggccggagcccccacctggggcccgcgcccgcccgccgcccgcagcgctctctgctcctgctgcagctgctgctgctcgtcgctgccccggggtccacgcaggcccaggccgccccgttccccgagctgtgcagttatacatgggaagctgttgataccaaaaataatgtactttataaaatcaacatctgtggaagtgtggatattgtccagtgcgggccatcaagtgctgtttgtatgcacgacttgaagacacgcacttatcattcagtgggtgactctgttttgagaagtgcaaccagatctctcctggaattcaacacaacagtgagctgtgaccagcaaggcacaaatcacagagtccagagcagcattgccttcctgtgtgggaaaaccctgggaactcctgaatttgtaactgcaacagaatgtgtgcactactttgagtggaggaccactgcagcctgcaagaaagacatatttaaagcaaataaggaggtgccatgctatgtgtttgatgaagagttgaggaagcatgatctcaatcctctgatcaagcttagtggtgcctacttggtggatgactccgatccggacacttctctattcatcaatgtttgtagagacatagacacactacgagacccaggttcacagctgcgggcctgtccccccggcactgccgcctgcctggtaagaggacaccaggcgtttgatgttggccagccccgggacggactgaagctggtgcgcaaggacaggcttgtcctgagttacgtgagggaagaggcaggaaagctagacttttgtgatggtcacagccctgcggtgactattacatttgtttgcccgtcggagcggagagagAAGGTCAGTGCACCAGATATTCTGAAACCTCTCAATCAAGAGGATCCCAAATGCTCTACTAACCCTATTTTGAAGCAACAGAATCTCCCATCCAGTCCGGCACCCAGTACCATATTCTCTGGAGGTTTTAGACACGGAAGTTTAATTAGCATTGACAGCACCTGTACAGAGATGGGCAATTTTGACAATGCTAATGTCACTGGAGAAATAGAATTTGCCATTCATTATTGCTTCAAAACCCATTCTTTAGAAATATGCATCAAGGCCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAGAAAAAGTGCAATCCGTATGTGAAGACCTACCTGTTGCCCGACAGATCCTCCCAGGGAAAGCGCAAGACTGGAGTCCAAAGGAACACCGTGGACCCGACCTTTCAGGAGACCTTGAAGTATCAGGTGGCCCCTGCCCAGCTGGTGACCCGGCAGCTGCAGGTCTCGGTGTGGCATCTGGGCACGCTGGCCCGGAGAGTGTTTCTTGGAGAAGTGATCATTCCTCTGGCCACGTGGGACTTTGAAGACAGCACAACACAGTCCTTCCGCTGGCATCCGCTCCGGGCCAAGGCGGAGAAATACGAAGACAGCGTTCCTCAGAGTAATGGAGAGCTCACAGTCCGGGCTAAGCTGGTTCTCCCTTCACGGCCCAGAAAACTCCAAGAGGCTCAAGAAGGGACAGATCAGCCATCACTTCATGGTCAACTTTGTTTGGTAGTGCTAGGAGCCAAGAATTTACCTGTGCGGCCAGATGGCACCTTGAACTCATTTGTTAAGGGCTGTCTCACTCTGCCAGACCAACAAAAACTGAGACTGAAGTCGCCAGTCCTGAGGAAGCAGGCTTGCCCCCAGTGGAAACACTCATTTGTCTTCAGTGGCGTAACCCCAGCTCAGCTGAGGCAGTCAAGCTTGGAGTTAACTGTCTGGGATCAGGCCCTCTTTGGAATGAACGACCGCTTGCTTGGAGGAACCAGACTTGGTTCAAAGGGAGACACAGCTGTTGGCGGGGATGCATGCTCACTATCGAAGCTCCAGTGGCAGAAAGTCCTTTCCAGCCCCAATCTATGGACAGACATGACTCTTGTCCTGCACTGA MGAAAGRSPHLGPAPARRPQRSLLLLQLLLLVAAPGSTQAQAAPFPELCSYTWEAVDTKNNVLYKINICGSVDIVQCGPSSAVCMHDLKTRTYHSVGDSVLRSATRSLLEFNTTVSCDQQGTNHRVQSSIAFLCGKTLGTPEFVTATECVHYFEWRTTAACKKDIFKANKEVPCYVFDEELRKHDLNPLIKLSGAYLVDDSDPDTSLFINVCRDIDTLRDPGSQLRACPPGTAACLVRGHQAFDVGQPRDGLKLVRKDRLVLSYVREEAGKLDFCDGHSPAVTITFVCPSERREKVSAPDILKPLNQEDPKCSTNPILKQQNLPSSPAPSTIFSGGFRHGSLISIDSTCTEMGNFDNANVTGEIEFAIHYCFKTHSLEICIKACKNLAYGEEKKKKCNPYVKTYLLPDRSSQGKRKTGVQRNTVDPTFQETLKYQVAPAQLVTRQLQVSVWHLGTLARRVFLGEVIIPLATWDFEDSTTQSFRWHPLRAKAEKYEDSVPQSNGELTVRAKLVLPSRPRKLQEAQEGTDQPSLHGQLCLVVLGAKNLPVRPDGTLNSFVKGCLTLPDQQKLRLKSPVLRKQACPQWKHSFVFSGVTPAQLRQSSLELTVWDQALFGMNDRLLGGTRLGSKGDTAVGGDACSLSKLQWQKVLSSPNLWTDMTLVLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 160390427 FALSE 159129354 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29491 CHD3::DNAH2 ENSG00000170004.19::ENSG00000183914.15 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 651 FALSE NA FALSE NA CHD3 ENSG00000170004.19 protein_coding + + chr17:7884796-7912760:+ chr17:7898102:+ chr17:7788114-7816078:+ chr17:7801420:+ DNAH2 ENSG00000183914.15 protein_coding + + chr17:7717744-7833742:+ chr17:7821243:+ chr17:7621062-7737060:+ chr17:7724561:+ chr17:7898521 chr17:7820683 NA NA chr17:7801839 chr17:7724001 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CHDNT|207-260|3.3e-29^HMG_box|219-257|2.7e-06^PHD|441-482|1.3e-13^zf-PHD-like|441-471|0.00093^PHD_2|449-483|0.0019^PHD|518-559|8e-13^zf-PHD-like|518-543|0.03^PHD_2|526-560|0.00017^Chromo|607-630|3.1e-06^Chromo|691-741|1.2e-17^ResIII|795-973|1.7e-10^SNF2-rel_dom|798-1093|2.3e-85^DEAD|812-979|7.4e-06^AAA_22|867-973|8.8e-05^HDA2-3|1047-1257|3.7e-13^ResIII|1118-1161|7.1^AAA_22|1118-1140|3.6^Helicase_C|1120-1233|1.2e-29^DUF1087|1357-1410|7e-24^CHDII_SANT-like|1438-1575|4.3e-65^CHDCT2|1796-1941|6.1e-80 none ["CHD3:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[51062] 105 52 105 52 ONLY_REF_SPLICE YES_LDAS 2.108 GT 1.9329 AG 1.9219 ENST00000380358.9 1-2228 ENST00000572933.6 11016-13284 chr17|+|[0]7884807-7885083[0]|[1]7889664-7889776[2]|[0]7890571-7890741[2]|[0]7890940-7891064[1]|[2]7893286-7893569[0]|[1]7893805-7893935[2]|[0]7894115-7894265[0]|[1]7894415-7894608[2]|[0]7894917-7895150[2]|[0]7895339-7895542[2]|[0]7897083-7897294[1]|[2]7897971-7898102[1]<==>chr17|+|[2]7821243-7821369[2]|[0]7823442-7823628[0]|[1]7823834-7823982[2]|[0]7824121-7824304[0]|[1]7824537-7824727[2]|[0]7830300-7830491[2]|[0]7830658-7830842[1]|[2]7831086-7831314[2]|[0]7831390-7831541[1]|[2]7831661-7831775[2]|[0]7832579-7832755[2]|[0]7832854-7832928[2]|[0]7833071-7833221[0]|[1]7833379-7833533[2] atggcttcccctctgagggacgaggaggaggaggaggaggagatggtggtgtcggaggaggaagaagaggaggaagaagagggcgacgaggaggaggaggaggaggtggaggcggccgacgaggacgatgaggaggacgacgacgagggagtactcgggcgcgggccgggccacgaccggggccgcgaccgccacagcccccccggctgccacctcttcccgccgccgccgccgccgccgccaccgctgcccccgccgccgccgcccccgccgccagataaggatgacattcggctgctgccgtcagcattgggtgtgaagaagagaaaacgaggacccaagaagcagaaggagaacaagccaggaaaaccccgaaaacgcaagaagcgtgacagtgaggaggaatttggttctgagcgagatgagtaccgggagaagtcagagagtgggggcagtgaatatggaaccggaccgggtcggaaacgaagaaggaagcaccgagaaaaaaaggagaagaagacaaagcggcggaaaaagggggagggagatggggggcaaaagcaagtggaacagaagtcatcagcaactctgcttctgacctggggcctggaggatgtggagcatgtgttctctgaggaggattaccacacgctcaccaactacaaagccttcagccagttcatgaggcccctaattgctaagaagaatcctaagatcccaatgtctaagatgatgaccatccttggggccaaatggagagagttcagtgccaacaaccccttcaaggggtcagcagctgctgtggcggcggcagcggcagcagcagcagcagctgtagctgagcaggtgtcagctgctgtctcgtcggccacccccatagcaccctccggaccccccgcccttccaccaccccctgctgctgatatccagcccccacccatccgaagagccaaaaccaaagagggcaaaggtccaggccataagaggcggagtaagagcccccgagtgcctgatggacgcaagaagcttcggggaaagaaaatggcaccactcaaaataaaactagggcttctgggtggcaagaggaagaaaggaggctcgtatgtttttcagagcgacgaaggtcctgaaccagaggctgaggaatcagacctggacagtggcagtgtccacagtgcctcaggccggcctgatggccctgtccgcaccaagaaactaaagagaggccggccaggaaggaagaagaagaaggtcctgggctgtcctgcagtggccggggaggaggaggttgatggctacgagacggatcaccaggattactgtgaggtgtgccagcagggtggggaaattattctgtgtgacacctgccctcgtgcctaccacctcgtctgccttgatcctgagcttgaccgggctccagagggcaaatggagctgccctcactgtgagaaggagggggtccagtgggaggccaaggaggaagaagaagaatacgaagaggagggagaggaagaaggggagaaggaggaggaggatgatcacatggagtactgccgcgtatgcaaggacggcggggagctcctgtgctgtgacgcgtgcatctcctcctaccacattcattgtctaaaccctcccctgcctgacattcccaatggtgaatggctgtgtccccgatgcacatgccccgtgctgaagggtcgagtgcagaagatcctacattggcggtggggggagccacctgtagcagtgccagcccctcaacaggcagatggaaatccagatgtcccacccccccgtcctcttcaaggcagatcagagcgagagttctttgtcaagtgggtaggactatcctactggcactgctcctgggccaaggagcttcagctggaaatcttccatttggttatgtatcgaaactaccagcggaagaatgacatggatgagcccccacccctggactatggctccggcgaggatgatgggaagagcgacaagcgtaaagtgaaagacccgcactatgctgagatggaggagaagtactatcgttttggcatcaagccagagtggatgaccgtccaccgcatcatcaaccacagtgtggataaaaaggggaattaccactatctagtaaaatggagggacttaccatatgaccagtccacgtgggaggaagatgaaatgaatatccctgaatacgaagaacataagcaaagctactggagacaccgGTACACCTGCCGTACCCTTTTCGAACGCCACAAACTACTATTCAGTTTTCATATGTGTGCCAAAATCTTGGAGACTTCTGGCAAGCTCAACATGGATGAATACAACTTCTTTCTACGTGGGGGTGTGGTCTTGGATCGGGAGGGCCAAATGGACAATCCATGTAGTAGCTGGCTTGCAGATGCCTACTGGGATAACATCACAGAGCTAGACAAACTGACCAACTTCCACGGACTCATGAACTCCTTTGAGCAGTACCCTCGTGACTGGCACCTGTGGTATACCAATGCTGCCCCGGAGAAGGCGATGCTGCCAGGTGAGTGGGAAAATGCCTGCAATGAAATGCAACGGATGCTGATCGTTCGCTCCCTGCGCCAGGACCGCGTGGCCTTCTGCGTGACCTCCTTCATCATCACCAACCTTGGCTCCCGCTTCATCGAGCCGCCTGTGCTGAATATGAAGTCGGTGCTGGAGGATTCAACCCCACGATCCCCACTCGTGTTCATCCTGTCCCCTGGTGTGGACCCCACCAGTGCCCTGCTGCAGCTGGCAGAGCACATGGGCATGGCCCAGCGCTTCCACGCCCTGTCCCTGGGCCAGGGCCAGGCCCCCATCGCTGCTCGGCTCCTCCGAGAGGGTGTGACTCAGGGACACTGGGTGTTCCTGGCAAACTGCCACCTGTCACTGTCTTGGATGCCTAATCTGGACAAGCTGGTGGAGCAGCTGCAGGTGGAGGATCCTCATCCATCCTTCCGCCTCTGGCTCAGCTCCATCCCCCACCCAGACTTCCCTATCTCAATCTTGCAGGTCAGCATCAAGATGACCACAGAGCCACCAAAGGGCCTAAAGGCCAACATGACACGTCTTTACCAACTGATGTCAGAACCACAGTTTTCCCGCTGCTCCAAACCTGCCAAATATAAGAAGCTGCTGTTTTCACTCTGTTTCTTCCACTCTGTGTTACTTGAACGCAAAAAGTTCCTGCAGCTTGGCTGGAACATCATCTATGGCTTCAATGACTCCGACTTTGAGGTGTCAGAAAACTTGCTGAGCCTCTATCTCGATGAGTACGAGGAGACACCTTGGGACGCACTTAAGTACCTCATTGCCGGCATCAACTATGGTGGACATGTCACAGATGACTGGGACCGGCGCCTGCTGACCACCTACATCAATGATTATTTCTGTGACCAGTCTCTATCAACTCCCTTCCACCGGTTGTCAGCACTGGAGACTTATTTCATCCCCAAGGATGGCAGCCTCGCTTCTTACAAGGAATACATCAGCTTATTGCCTGGCATGGACCCCCCTGAGGCCTTTGGCCAGCACCCCAATGCTGATGTGGCCTCTCAGATCACTGAGGCACAAACCCTCTTTGATACTTTGCTTTCCTTGCAACCTCAGATTACACCCACCAGGGCTGGAGGCCAGACCCGGGAAGAGAAGGTCCTTGAGTTGGCCGCTGATGTGAAGCAGAAGATCCCTGAAATGATCGACTATGAGGGGACTCAAAAACTGCTAGCTCTCGACCCCTCCCCCCTCAATGTGGTCCTTCTGCAGGAGATCCAGAGATACAACACACTGATGCAGACCATCCTGTTCTCACTGACAGACCTAGAGAAAGGCATCCAGGGTCTCATCGTCATGTCTACAAGCCTGGAAGAGATTTTCAATTGCATCTTTGATGCCCATGTTCCTCCGCTCTGGGGAAAGGCATACCCCTCACAAAAGCCATTGGCTGCCTGGACCCGGGACTTGGCCATGCGTGTGGAGCAGTTTGAGCTGTGGGCCAGCCGGGCCCGGCCTCCTGTGATCTTCTGGTTGTCTGGTTTCACCTTTCCCACTGGCTTCCTCACTGCTGTGCTGCAGTCTTCAGCTCGCCAAAACAACGTTTCAGTGGACAGCCTCTCCTGGGAGTTTATCGTTTCCACTGTGGATGACAGCAACCTAGTGTATCCCCCCAAGGATGGTGTCTGGGTCCGGGGCCTGTACCTGGAAGGTGCTGGCTGGGACCGGAAGAACTCCTGCTTGGTGGAGGCAGAGCCCATGCAGCTTGTCTGCCTCATGCCCACGATCCACTTCCGGCCTGCAGAGAGCCGCAAGAAGAGCGCCAAGGGCATGTACTCCTGCCCCTGCTATTACTATCCCAACCGGGCAGGCAGCTCAGACCGAGCCTCCTTTGTCATCGGCATTGACCTGCGGTCTGGGGCCATGACACCTGATCATTGGATCAAGAGGGGCACTGCTCTACTCATGAGCCTGGACAGCTGA MASPLRDEEEEEEEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEEDDDEGVLGRGPGHDRGRDRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEEEFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTKRRKKGEGDGGQKQVEQKSSATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVRTKKLKRGRPGRKKKKVLGCPAVAGEEEVDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWRWGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINHSVDKKGNYHYLVKWRDLPYDQSTWEEDEMNIPEYEEHKQSYWRHRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCSSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNAAPEKAMLPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIITNLGSRFIEPPVLNMKSVLEDSTPRSPLVFILSPGVDPTSALLQLAEHMGMAQRFHALSLGQGQAPIAARLLREGVTQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSIPHPDFPISILQVSIKMTTEPPKGLKANMTRLYQLMSEPQFSRCSKPAKYKKLLFSLCFFHSVLLERKKFLQLGWNIIYGFNDSDFEVSENLLSLYLDEYEETPWDALKYLIAGINYGGHVTDDWDRRLLTTYINDYFCDQSLSTPFHRLSALETYFIPKDGSLASYKEYISLLPGMDPPEAFGQHPNADVASQITEAQTLFDTLLSLQPQITPTRAGGQTREEKVLELAADVKQKIPEMIDYEGTQKLLALDPSPLNVVLLQEIQRYNTLMQTILFSLTDLEKGIQGLIVMSTSLEEIFNCIFDAHVPPLWGKAYPSQKPLAAWTRDLAMRVEQFELWASRARPPVIFWLSGFTFPTGFLTAVLQSSARQNNVSVDSLSWEFIVSTVDDSNLVYPPKDGVWVRGLYLEGAGWDRKNSCLVEAEPMQLVCLMPTIHFRPAESRKKSAKGMYSCPCYYYPNRAGSSDRASFVIGIDLRSGAMTPDHWIKRGTALLMSLDS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29492 ZFP36L1::ACTN1 ENSG00000185650.10::ENSG00000072110.16 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 653 TRUE 1168 TRUE 446 ZFP36L1 ENSG00000185650.10 protein_coding - - chr14:68787660-68796253:- chr14:68796075:- chr14:69254377-69262970:- chr14:69262792:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68912242:- chr14:69340845-69446157:- chr14:69378959:- chr14:68795036,chr14:68795051 chr14:68916913,chr14:68916925 NA NA chr14:69261753,chr14:69261768 chr14:69383630,chr14:69383642 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tis11B_N-PARTIAL|24-75~|1.5e-31 Spectrin-PARTIAL|~341-383|1.3e-15^DHR-2_Lobe_C-PARTIAL|~341-345|4.7^Spectrin|394-498|9e-29^Uds1|413-503|0.00011^Dak2|486-507|2.4^Spectrin|510-620|8.8e-18^EF-hand_11|580-627|2.3^DHR-2_Lobe_C|622-673|0.003^Spectrin|632-732|1.1e-13^Uds1|662-699|0.72^XisI|670-720|7.8e-05^EF-hand_11|734-819|0.00019^AIF-1|745-812|0.00027^EF-hand_1|750-777|1.5e-05^EF-hand_6|750-779|2.5e-07^EF-hand_7|751-812|8.8e-10^EF-hand_8|763-813|6.3e-09^EF-hand_1|786-813|0.00016^EF-hand_6|787-812|0.68^Dak2|800-844|6.8^EFhand_Ca_insen|817-835|8.2e-06^EFhand_Ca_insen|870-926|3e-21^EF-hand_8|879-888|0.91^EF-hand_6|879-888|1 ["ZFP36L1:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.08Mb];LOCAL_REARRANGEMENT:-:[77890] 96 6 96 3.02 ONLY_REF_SPLICE YES_LDAS 1.3294 GT 1.7465 AG 1.7819 ENST00000557086.1 1-75 ENST00000538545.6 341-2793 chr14|-|[2]68796075-68796149[0]<==>chr14|-|[2]68874859-68875146[0]|[2]68877082-68877240[0]|[2]68878458-68878523[0]|[2]68879962-68880108[0]|[2]68880810-68880989[0]|[2]68882458-68882592[0]|[2]68882873-68883055[0]|[2]68884168-68884308[0]|[2]68884775-68884883[2]|[1]68885425-68885575[1]|[0]68890139-68890286[0]|[2]68892053-68892283[0]|[2]68893655-68893747[0]|[2]68902477-68902562[1]|[0]68904655-68904736[0]|[2]68909318-68909396[2]|[1]68909955-68910042[1]|[0]68912156-68912242[1] atggggagggcccggaagtcgggcctgggacagaggagccggcccaccgcctcccggtcggaagcggcagtgcagAAATCGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAGAGACTTCAGCCAAGGAAGGGCTGCTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAGCTGGAAGGATGGCCTCGGCTTCTGTGCTTTGATCCACCGACACCGGCCCGAGCTGATTGACTACGGGAAGCTGCGGAAGGATGATCCACTCACAAATCTGAATACGGCTTTTGACGTGGCAGAGAAGTACCTGGACATCCCCAAGATGCTGGATGCCGAAGACATCGTTGGAACTGCCCGACCGGATGAGAAAGCCATCATGACTTACGTGTCTAGCTTCTACCACGCCTTCTCTGGAGCCCAGAAGGCGGAGACAGCAGCCAATCGCATCTGCAAGGTGTTGGCCGTCAACCAGGAGAACGAGCAGCTTATGGAAGACTACGAGAAGCTGGCCAGTGATCTGTTGGAGTGGATCCGCCGCACAATCCCGTGGCTGGAGAACCGGGTGCCCGAGAACACCATGCATGCCATGCAACAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGGCCTGCCTTCATGCCCTCTGAGGGCAGGATGGTCTCGGACATCAACAATGCCTGGGGCTGCCTGGAGCAGGTGGAGAAGGGCTATGAGGAGTGGTTGCTGAATGAGATCCGGAGGCTGGAGCGACTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACTGACGGCAAAGAGGCCATGCTGCGACAGAAGGACTATGAGACCGCCACCCTCTCGGAGATCAAGGCCCTGCTCAAGAAGCATGAGGCCTTCGAGAGTGACCTGGCTGCCCACCAGGACCGTGTGGAGCAGATTGCCGCCATCGCACAGGAGCTCAATGAGCTGGACTATTATGACTCACCCAGTGTCAACGCCCGTTGCCAAAAGATCTGTGACCAGTGGGACAATCTGGGGGCCCTAACTCAGAAGCGAAGGGAAGCTCTGGAGCGGACCGAGAAACTGCTGGAGACCATTGACCAGCTGTACTTGGAGTATGCCAAGCGGGCTGCACCCTTCAACAACTGGATGGAGGGGGCCATGGAGGACCTGCAGGACACCTTCATTGTGCACACCATTGAGGAGATCCAGGGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCTGATGCCGACAAGGAGCGCCTGGCCATCCTGGGCATCCACAATGAGGTGTCCAAGATTGTCCAGACCTACCACGTCAATATGGCGGGCACCAACCCCTACACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCACGTGCGGCAGCTGGTGCCTCGGAGGGACCAAGCTCTGACGGAGGAGCATGCCCGACAGCAGCACAATGAGAGGCTACGCAAGCAGTTTGGAGCCCAGGCCAATGTCATCGGGCCCTGGATCCAGACCAAGATGGAGGAGATCGGGAGGATCTCCATTGAGATGCATGGGACCCTGGAGGACCAGCTCAGCCACCTGCGGCAGTATGAGAAGAGCATCGTCAACTACAAGCCAAAGATTGATCAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCGCTCATCTTCGACAACAAGCACACCAACTACACCATGGAGCACATCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCAGGACCATCAATGAGGTAGAGAACCAGATCCTGACCCGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAATGAGTTCCGGGCCTCCTTCAACCACTTTGACCGGAAGAAGACAGGCATGATGGACACGGATGATTTCCGCGCCTGCCTGATCTCCATGGGTTACAACATGGGAGAAGCAGAATTTGCCCGCATCATGAGCATTGTGGACCCCAACCGCCTGGGGGTAGTGACATTCCAGGCCTTCATTGACTTCATGTCCCGCGAGACAGCCGACACAGATACAGCAGACCAAGTCATGGCTTCCTTCAAGATCCTGGCTGGGGACAAGTTACAGGAGGGAGGCAAAATGCAAACGGCACATGCTGCCTTCACGCCGCCAGGCTTTGCGGCTGTGTCGGGCCGCGCCGCTTTACGGCTGCTGGACTTTGCGGCCTTCCTGACCACTCTCTCCTCGCAGAACTACATTACCATGGACGAGCTGCGCCGCGAGCTGCCACCCGACCAGGCTGAGTACTGCATCGCGCGGATGGCCCCCTACACCGGCCCCGACTCCGTGCCAGGTGCTCTGGACTACATGTCCTTCTCCACGGCGCTGTACGGCGAGAGTGACCTCTAA MGRARKSGLGQRSRPTASRSEAAVQKSWMGM*R*PWA*SGPSSCALPSRTSPWKRLQPRKGCSCGVRERQPLTKMSTSRTST*AGRMASASVL*STDTGPS*LTTGSCGRMIHSQI*IRLLTWQRSTWTSPRCWMPKTSLELPDRMRKPS*LTCLASTTPSLEPRRRRQQPIASARCWPSTRRTSSLWKTTRSWPVICWSGSAAQSRGWRTGCPRTPCMPCNRSWRTSGTTGACTSRPRCRRSASWRSTSTRCRPSCGSATGLPSCPLRAGWSRTSTMPGAAWSRWRRAMRSGC*MRSGGWSDWTTWQRSSGRRPPSTRPGLTAKRPCCDRRTMRPPPSRRSRPCSRSMRPSRVTWLPTRTVWSRLPPSHRSSMSWTIMTHPVSTPVAKRSVTSGTIWGP*LRSEGKLWSGPRNCWRPLTSCTWSMPSGLHPSTTGWRGPWRTCRTPSLCTPLRRSRD*PQPMSSSRPPSLMPTRSAWPSWASTMRCPRLSRPTTSIWRAPTPTQPSRLRRSMANGTTCGSWCLGGTKL*RRSMPDSSTMRGYASSLEPRPMSSGPGSRPRWRRSGGSPLRCMGPWRTSSATCGSMRRASSTTSQRLISWRATTSSSRRRSSSTTSTPTTPWSTSVWAGSSCSPPSPGPSMR*RTRS*PGMPRASARSR*MSSGPPSTTLTGRRQA*WTRMISAPA*SPWVTTWEKQNLPAS*ALWTPTAWG**HSRPSLTSCPARQPTQIQQTKSWLPSRSWLGTSYRREAKCKRHMLPSRRQALRLCRAAPLYGCWTLRPS*PLSPRRTTLPWTSCAASCHPTRLSTASRGWPPTPAPTPCQVLWTTCPSPRRCTARVTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29493 ZFP36L1::ACTN1 ENSG00000185650.10::ENSG00000072110.16 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 654 TRUE 1168 TRUE 446 ZFP36L1 ENSG00000185650.10 protein_coding - - chr14:68787660-68796253:- chr14:68796043:- chr14:69254377-69262970:- chr14:69262760:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68912242:- chr14:69340845-69446157:- chr14:69378959:- chr14:68795036,chr14:68795051 chr14:68916913,chr14:68916925 NA NA chr14:69261753,chr14:69261768 chr14:69383630,chr14:69383642 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ZFP36L1:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.08Mb];LOCAL_REARRANGEMENT:-:[77890] 95 6 95 2.98 ONLY_REF_SPLICE YES_LDAS 1.3155 GT 1.6402 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29494 EPHA2::FBXO42 ENSG00000142627.13::ENSG00000037637.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 652 FALSE NA FALSE NA EPHA2 ENSG00000142627.13 protein_coding - - chr1:16124337-16156069:- chr1:16148378:- chr1:16450832-16482564:- chr1:16474873:- FBXO42 ENSG00000037637.11 protein_coding - - chr1:16246840-16352480:- chr1:16256759:- chr1:16573335-16678975:- chr1:16583254:- chr1:16144192,chr1:16144202 chr1:16287001,chr1:16287008 NA NA chr1:16470687,chr1:16470697 chr1:16613496,chr1:16613503 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ephrin_lbd|29-201|2.7e-68^Ephrin_rec_like|272-307|6.9e-07^fn3|331-418|1.1e-13^Ephrin_rec_like|364-369|6.5^Pur_ac_phosph_N|390-429|0.00016^Interfer-bind|393-416|0.044^NDNF|393-420|0.01^fn3|438-519|1.6e-20^Interfer-bind|438-515|6.4e-08^Pur_ac_phosph_N|442-526|7.7e-10^NDNF|491-514|0.035^CD34_antigen|533-580|0.00016^EphA2_TM|538-610|1.1e-25^TM_ErbB1|542-567|0.00015^PK_Tyr_Ser-Thr-PARTIAL|614-823~|3.3e-104^Pkinase-PARTIAL|615-823~|1.8e-50^ABC1|617-660|0.02^ABC1|672-771|5.3e-06^Kdo|689-750|0.0003^Pkinase_fungal|712-748|0.00035^Haspin_kinase|734-773|6.3e-05^fn3|775-787|5.8 Kelch_2|637-652|7^Kelch_1|677-696|0.012^Kelch_4|678-698|0.0008^Kelch_2|679-701|0.054^Kelch_6|679-696|0.13^Kelch_5|680-694|0.35^Kelch_3|686-694|1.2 ["EPHA2:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.09Mb];LOCAL_REARRANGEMENT:-:[90752] 87 46 87 46 ONLY_REF_SPLICE YES_LDAS 1.7857 GT 1.8892 AG 1.6895 ENST00000358432.8 1-823 ENST00000375592.8 503-2154 chr1|-|[0]16148378-16149047[0]|[2]16150896-16150963[1]|[0]16155848-16155932[0]<==>chr1|-|[2]16250670-16251785[0]|[2]16252288-16252404[0]|[2]16253096-16253152[0]|[2]16253635-16253731[2]|[1]16255711-16255821[2]|[1]16256606-16256759[1] atggagctccaggcagcccgcgcctgcttcgccctgctgtggggctgtgcgctggccgcggccgcggcggcgcagggcaaggaagtggtactgctggactttgctgcagctggaggggagctcggctggctcacacacccgtatggcaaagggtgggacctgatgcagaacatcatgaatgacatgccgatctacatgtactccgtgtgcaacgtgatgtctggcgaccaggacaactggctccgcaccaactgggtgtaccgaggagaggctgagcgtatcttcattgagctcaagtttactgtacgtgactgcaacagcttccctggtggcgccagctcctgcaaggagactttcaacctctactatgccgagtcggacctggactacggcaccaacttccagaagcgcctgttcaccaagattgacaccattgcgcccgatgagatcaccgtcagcagcgacttcgaggcacgccacgtgaagctgaacgtggaggagcgctccgtggggccgctcacccgcaaaggcttctacctggccttccaggatatcggtgcctgtgtggcgctgctctccgtccgtgtctactacaagaagtgccccgagctgctgcagggcctggcccacttccctgagaccatcgccggctctgatgcaccttccctggccactgtggccggcacctgtgtggaccatgccgtggtgccaccggggggtgaagagccccgtatgcactgtgcagtggatggcgagtggctggtgcccattgggcagtgcctgtgccaggcaggctacgagaaggtggaggatgcctgccaggGGTCCTATCCTTCCCCCAAAGCTGGAGCAACTCTGGTCGTGTACAAGGACTTGCTAGTGCTGTTTGGTGGCTGGACGCGGCCAAGCCCTTATCCCCTACACCAGCCAGAGAGATTCTTTGATGAAATACACACTTACTCACCCTCTAAAAATTGGTGGAACTGCATTGTGACAACCCATGGGCCACCTCCCATGGCTGGCCACTCCTCCTGTGTGATAGATGATAAAATGATTGTCTTTGGTGGCTCTTTAGGATCCCGGCAAATGAGCAATGATGTCTGGGTCCTTGACCTTGAGCAGTGGGCGTGGTCCAAGCCGAACATCTCTGGCCCCAGTCCTCATCCTCGAGGTGGCCAATCTCAGATTGTCATAGATGATGCAACTATCTTAATCCTCGGAGGGTGTGGCGGTCCCAATGCTCTATTCAAGGATGCTTGGTTGTTGCACATGCATTCTGGTCCTTGGGCCTGGCAGCCACTCAAGGTAGAAAATGAAGAGCATGGGGCCCCAGAACTGTGGTGCCATCCAGCTTGCCGGGTGGGACAGTGTGTGGTGGTCTTCAGCCAGGCTCCTAGTGGGAGAGCCCCACTCAGCCCCAGTTTGAACTCTCGCCCATCACCTATCAGTGCCACTCCTCCAGCTCTCGTTCCTGAAACCCGAGAGTACCGCTCTCAGTCTCCAGTAAGAAGCATGGATGAAGCTCCTTGTGTTAACGGCCGCTGGGGAACACTGAGACCCAGGGCTCAAAGGCAGACTCCTTCAGGTTCCCGGGAAGGGAGCCTTTCCCCAGCCAGAGGAGACGGCTCTCCTATCCTCAATGGTGGGAGTTTGTCTCCAGGAACGGCAGCTGTGGGTGGCTCTTCTTTGGACAGTCCTGTACAGGCCATATCTCCAAGTACTCCATCTGCTCCTGAAGGATACGACCTGAAAATAGGACTTTCTTTGGCCCCCCGACGAGGATCACTACCAGATCAGAAAGATCTGAGATTAGGATCCATAGATCTGAATTGGGATCTGAAACCCGCTTCCAGTAGTAATCCCATGGATGGCATGGACAATAGGACAGTTGGGGGAAGTATGAGACACCCTCCTGAACAGACAAATGGTGTGCATACCCCACCTCACGTGGCCAGTGCCCTTGCAGGGGCCGTCTCCCCAGGTGCCCTGCGTCGGAGTCTGGAAGCCATCAAAGCGATGTCCTCCAAAGGCCCCTCGGCCTCTGCAGCACTAAGTCCTCCTCTTGGGTCTTCTCCAGGCTCTCCTGGGAGCCAGAGTTTGAGCAGTGGAGAAACAGTGCCCATCCCTCGCCCAGGGCCTGCCCAAGGAGATGGACATTCCTTACCTCCCATTGCTCGCCGCCTGGGCCACCACCCTCCACAGTCCCTAAATGTTGGCAAACCCCTATACCAGAGTATGAACTGCAAGCCCATGCAGATGTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGGGTCAAATGGAAAGTATTTAATAGCAGTTCTGTGGTTGGACCTCCTGAAACCAGCCTGCATACCGTGGTACAAGGCAGGGGTGAACTCATCATATTTGGAGGACTCATGGACAAGAAACAGAATGTGAAGTACTATCCAAAAACAAACGCCTTGTACTTTGTACGAGCAAAGAGATAA MELQAARACFALLWGCALAAAAAAQGKEVVLLDFAAAGGELGWLTHPYGKGWDLMQNIMNDMPIYMYSVCNVMSGDQDNWLRTNWVYRGEAERIFIELKFTVRDCNSFPGGASSCKETFNLYYAESDLDYGTNFQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLSVRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQMSNDVWVLDLEQWAWSKPNISGPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHSGPWAWQPLKVENEEHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISPSTPSAPEGYDLKIGLSLAPRRGSLPDQKDLRLGSIDLNWDLKPASSSNPMDGMDNRTVGGSMRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHHPPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFNSSSVVGPPETSLHTVVQGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Ephrin type-A receptor 2 TK Eph P29317 FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 16474873 TRUE 16583254 TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29495 CNOT6::SLC1A3 ENSG00000113300.13::ENSG00000079215.15 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CNOT6 ENSG00000113300.13 protein_coding + + chr5:180494379-180578358:+ chr5:180550117:+ chr5:179921379-180005358:+ chr5:179977117:+ SLC1A3 ENSG00000079215.15 protein_coding + + chr5:36596588-36688334:+ chr5:36671029:+ chr5:36596690-36688436:+ chr5:36671131:+ chr5:180550982,chr5:180550980 chr5:36668509,chr5:36668504 NA NA chr5:179977982,chr5:179977980 chr5:36668611,chr5:36668606 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LRR_6|50-63|0.00061^LRR_4|51-90|6.9e-11^LRR_8|52-109|5.7e-14^LRR_1|52-73|0.00013^LRR_6|73-87|0.00016^LRR_1|75-96|2.1e-05^LRR_8|95-132|5.1e-06^LRR_4|98-138|1.7e-06^LRR_1|98-119|0.00087^LRR_6|98-107|0.29^LRR_1|121-137|0.024^Exo_endo_phos-PARTIAL|193-299~|6.2e-22 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:143.81Mb] 63 33 63 33 ONLY_REF_SPLICE YES_LDAS 1.289 GT 1.9899 AG 1.8295 ENST00000261951.9 1-299 ENST00000679423.1 363-381 chr5|+|[0]180529277-180529388[0]|[1]180549931-180550117[1]<==>chr5|+|[2]36671029-36671047[2] atgcccaaagaaaaatacgagccccctgaccctcggaggatgtatacaattatgtcttctgaggaagcagcaaatggaaagaaatcccactgggcagagcttgaaataagtggaaaagtaagaagcttaagcgcatctttgtggtcactaactcacctgacagctttgcatttgagtgacaattccctgtcccgaattccttcagacattgccaagcttcacaatctggtgtatttggacctgtcatctaataaaattcgtagcttacccgcagaactcggaaacatggtatcactcagGAATGGCGGCGCTAGATAG MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRNGGAR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29496 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 655 TRUE 1169 TRUE 447 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151666361:- chr5:151040657-151066536:- chr5:151045922:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822963:- chr5:151202074-151304412:- chr5:151202524:- chr5:151665203,chr5:151665205 chr5:151825364,chr5:151825364 NA NA chr5:151044764,chr5:151044766 chr5:151204925,chr5:151204925 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Kazal_2|71-83|0.89^FOLN|72-93|6.2e-13^hEGF|77-96|0.00023^Kazal_1|95-149|8.7e-15^Kazal_2|98-149|8.6e-14^CFAI_KAZAL|109-134|1.2e-05^SPARC_Ca_bdg|153-289|2.2e-40^EF-hand_1|244-252|0.6^Kazal_1|263-280|0.081^Kazal_2|263-281|0.33^EF-hand_1|269-288|0.00021 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.14Mb] 45 39 45 31.34 ONLY_REF_SPLICE YES_LDAS 1.025 GT 1.8892 AG 1.6895 ENST00000231061.9 1-734 ENST00000274576.9 1060-1350 chr5|-|[1]151666361-151666509[0]|[2]151667467-151667600[1]|[0]151669664-151669784[0]|[2]151671573-151671694[1]|[0]151673129-151673216[0]|[2]151674612-151674674[0]|[2]151676132-151676188[0]<==>chr5|-|[2]151822673-151822963[0] atgagggcctggatcttctttctcctttgcctggccgggagggccttggcagcccctcagcaagaagccctgcctgatgagacagaggtggtggaagaaactgtggcagaggtgactgaggtatctgtgggagctaatcctgtccaggtggaagtaggagaatttgatgatggtgcagaggaaaccgaagaggaggtggtggcggaaaatccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggatgagaacaacacccccatgtgcgtgtgccaggaccccaccagctgcccagcccccattggcgagtttgagaaggtgtgcagcaatgacaacaagaccttcgactcttcctgccacttctttgccacaaagtgcaccctggagggcaccaagaagggccacaagctccacctggactacatcgggccttgcaaatacatccccccttgcctggactctgagctgaccgaattccccctgcgcatgcgggactggctcaagaacgtcctggtcaccctgtatgagagggatgaggacaacaaccttctgactgagaagcagaagctgcgggtgaagaagatccatgagaatgagaagcgcctggaggcaggagaccaccccgtggagctgctggcccgggacttcgagaagaactataacatgtacatcttccctgtacactggcagttcggccagctggaccagcaccccattgacggGAGGATGAAGCTGGAGAAGGCCGCTTTAACTTCTCTGCCTATGGGATGGGCCCAGCCTGTCTACAGGCCAAGGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGAGGGCCAAGAAGATCGACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCATTTTCAACATGTTCTACTGGATCATCTACAAGATTGTCCGTAGAGAGGACGTCCACAACCAGTGA MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGRMKLEKAALTSLPMGWAQPVYRPRMASQSRAPTTVTPPTPLLHHLSPQRRCENSSSRGPRRSTKYPALASPWPSSFSTCSTGSSTRLSVERTSTTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29497 KMT2A::PHLDB1 ENSG00000118058.25::ENSG00000019144.20 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 657 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118493230:+ chr11:118307171-118397547:+ chr11:118363945:+ PHLDB1 ENSG00000019144.20 protein_coding + + chr11:118606440-118658031:+ chr11:118631207:+ chr11:118477155-118528741:+ chr11:118501924:+ chr11:118494341,chr11:118494340 chr11:118628656,chr11:118628652 NA NA chr11:118365056,chr11:118365055 chr11:118499372,chr11:118499368 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.097^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1643|0.0092^PHD|1602-1660|3.3e-08^zf-HC5HC2H_2|1602-1646|9.9^zf-CXXC|1616-1632|2.2^PHD_2|1616-1632|0.025^Bromodomain|1737-1778|1e-05^zf-HC5HC2H_2|1908-2011|1.7e-12^zf-HC5HC2H|1936-2014|9e-14^PHD|1969-1998|0.95^FYRN|2055-2110|3.6e-20^FYRC|3705-3784|8.3e-24^SET|3876-3981|6.7e-31 none ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.08Mb];NEIGHBORS[79608] 36 8 36 8 ONLY_REF_SPLICE YES_LDAS 0.5907 GT 1.9086 AG 1.7819 ENST00000531904.7 1-5277 ENST00000361417.6 1828-4134 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]|[0]118484183-118484314[2]|[0]118484862-118484975[2]|[0]118488614-118488760[2]|[0]118489792-118489887[2]|[0]118490129-118490249[0]|[1]118491196-118491318[0]|[1]118491744-118491928[2]|[0]118493057-118493230[2]<==>chr11|+|[0]118631207-118631479[2]|[0]118631913-118632053[2]|[0]118632159-118632296[2]|[0]118635393-118635548[2]|[0]118638891-118639001[2]|[0]118639162-118639251[2]|[0]118642254-118642394[2]|[0]118643800-118643940[2]|[0]118644072-118644174[0]|[1]118645356-118645650[1]|[2]118645735-118645825[2]|[0]118647930-118648076[2]|[0]118650077-118650193[2]|[0]118650445-118650547[0]|[1]118655605-118655690[2]|[0]118655860-118655892[2]|[0]118656683-118656823[2] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaaggaaaaaccacctccggtcaataagcaggagaatgcaggcactttgaacatcctcagcactctctccaatggcaatagttctaagcaaaaaattccagcagatggagtccacaggatcagagtggactttaaggaggattgtgaagcagaaaatgtgtgggagatgggaggcttaggaatcttgacttctgttcctataacacccagggtggtttgctttctctgtgccagtagtgggcatgtagagtttgtgtattgccaagtctgttgtgagcccttccacaagttttgtttagaggagaacgagcgccctctggaggaccagctggaaaattggtgttgtcgtcgttgcaaattctgtcacgtttgtggaaggcaacatcaggctacaaagcagctgctggagtgtaataagtgccgaaacagctatcaccctgagtgcctgggaccaaactaccccaccaaacccacaaagaagaagaaagtctggatctgtaccaagtgtgttcgctgtaagagctgtggatccacaactccaggcaaagggtgggatgcacagtggtctcatgatttctcactgtgtcatgattgcgccaagctctttgctaaaggaaacttctgccctctctgtgacaaatgttatgatgatgatgactatgagagtaagatgatgcaatgtggaaagtgtgatcgctgggtccattccaaatgtgagaatctttcaggtacagaagatgagatgtatgagattctatctaatctgccagaaagtgtggcctacacttgtgtgaactgtactgagcggcaccctgcagagtggcgactggcccttgaaaaagagctgcagatttctctgaagcaagttctgacagctttgttgaattctcggactaccagccatttgctacgctaccggcaggctgccaagcctccagacttaaatcccgagacagaggagagtataccttcccgcagctcccccgaaggacctgatccaccagttcttactgaggtcagcaaacaggatgatcagcagcctttagatctagaaggagtcaagaggaagatggaccaagggaattacacatctgtgGAACGCCAGCGCCTGGAGACCATCCTGAACCTGTGTGCCGAATACAGCCGGGCTGATGGGGGACCTGAGGCTGGGGAGCTTCCCAGCATTGGGGAGGCCACCGCAGCATTGGCACTGGCAGGCCGGAGGCCCTCACGAGGCCTTGCAGGGGCCTCTGGGCGGAGCAGCGAGGAGCCTGGCGTTGCCACCCAACGCCTATGGGAGAGTATGGAGCGCTCAGATGAGGAAAATCTCAAGGAGGAGTGCAGCAGCACTGAGAGCACCCAGCAGGAGCACGAAGATGCACCTAGCACCAAGCTCCAGGGAGAGGTGCTAGCCCTGGAAGAAGAGCGGGCTCAGGTGCTGGGGCACGTGGAGCAGCTCAAGGTCCGTGTGAAGGAGCTAGAGCAGCAGCTGCAGGAGTCAGCCCGAGAGGCCGAAATGGAGCGGGCACTGCTGCAGGGAGAGAGGGAGGCAGAGCGGGCACTGCTGCAGAAGGAGCAGAAGGCAGTGGATCAGCTGCAGGAGAAGCTGGTGGCCTTGGAGACAGGCATCCAGAAGGAGAGGGACAAGGAGGCAGAGGCCCTGGAGACTGAGACAAAGCTCTTTGAGGACTTGGAGTTCCAGCAGTTGGAGCGGGAGAGCCGCGTGGAGGAGGAGCGCGAGCTGGCCGGCCAGGGGCTGCTCCGGAGCAAGGCTGAGCTGCTCCGCAGCATCGCCAAGAGGAAGGAGCGCCTGGCCATCCTGGACAGTCAGGCTGGGCAGATCCGGGCTCAGGCCGTGCAGGAATCAGAACGCCTGGCCCGGGACAAGAATGCCTCCTTACAGCTGCTGCAAAAGGAGAAGGAGAAGCTGACTGTGCTGGAAAGGAGATACCACTCACTCACAGGGGGCAGGCCTTTCCCGAAGACCACATCGACCCTCAAAGAGATGGAGAAGCTGCTGCTCCCTGCTGTAGACTTAGAGCAGTGGTACCAGGAGCTGATGGCCGGGCTGGGGACTGGCCCCGCTGCAGCCTCCCCTCACTCTTCTCCCCCGCCTCTGCCCGCCAAAGCTTCCCGTCAGCTGCAGGTTTACCGCTCCAAGATGGATGGCGAGGCCACCAGCCCCCTTCCCCGGACCCGCAGCGGCCCCCTCCCCTCCTCCTCTGGCTCTTCCTCCTCCTCCTCCCAGCTCAGCGTGGCTACCCTGGGGCGTAGCCCCTCCCCAAAGAGCGCTCTACTCACCCAGAATGGCACGGGCAGCCTTCCTCGCAACCTGGCAGCCACACTGCAGGACATCGAGACCAAGCGCCAACTAGCTCTGCAGCAGAAGGGACAACAAGTGATTGAAGAGCAGCGGCGGCGACTGGCTGAGCTGAAGCAGAAAGCGGCAGCTGAGGCACAGTGCCAGTGGGATGCCCTTCACGGGGCAGCACCCTTCCCAGCGGGCCCCTCGGGCTTCCCCCCTCTCATGCACCACTCTATCCTACACCACCTGCCTGCGGGGCGGGAGCGTGGGGAGGAGGGTGAGCACGCCTATGATACGCTGAGTCTGGAGAGCTCTGACAGCATGGAGACCAGCATCTCCACCGGGGGCAACTCGGCCTGCTCCCCTGACAACATGTCCAGCGCGAGTGGTCTGGACATGGGGAAGATCGAGGAGATGGAGAAGATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCATGGAGTCGAGGGAGCGGGAGATGGAGCTGCGGCGGCAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTAGAACGGAGGCTGCAGAGTGAGAGTGCCCGGAGGCAGCAGCTGGTCGAGAAGGAGGTCAAGATGCGGGAGAAACAATTTTCCCAGGCACGACCCCTGACCCGCTACCTGCCAATCCGGAAGGAGGACTTTGACCTGAAGACACATATTGAGTCATCGGGCCATGGTGTTGATACCTGCCTGCACGTGGTGCTCAGCAGCAAGGTCTGCCGTGGCTACTTGGTCAAGATGGGCGGCAAGATTAAATCATGGAAGAAGCGCTGGTTTGTCTTCGACCGGCTCAAGCGCACCCTTTCCTATTATGTGGACAAGCATGAGACGAAGCTGAAGGGAGTCATCTATTTCCAGGCCATTGAGGAAGTGTACTACGACCACCTGCGCAGTGCAGCCAAGAAGAGGTTTTTCCGCTTCACTATGGTGACTGAGAGCCCGAACCCAGCCCTCACCTTCTGCGTAAAGACCCATGACCGGCTGTACTACATGGTGGCCCCATCTGCAGAGGCCATGCGTATCTGGATGGATGTCATTGTCACAGGGGCTGAGGGCTACACTCAGTTCATGAACTAA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSGTEDEMYEILSNLPESVAYTCVNCTERHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQAAKPPDLNPETEESIPSRSSPEGPDPPVLTEVSKQDDQQPLDLEGVKRKMDQGNYTSVERQRLETILNLCAEYSRADGGPEAGELPSIGEATAALALAGRRPSRGLAGASGRSSEEPGVATQRLWESMERSDEENLKEECSSTESTQQEHEDAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESAREAEMERALLQGEREAERALLQKEQKAVDQLQEKLVALETGIQKERDKEAEALETETKLFEDLEFQQLERESRVEEERELAGQGLLRSKAELLRSIAKRKERLAILDSQAGQIRAQAVQESERLARDKNASLQLLQKEKEKLTVLERRYHSLTGGRPFPKTTSTLKEMEKLLLPAVDLEQWYQELMAGLGTGPAAASPHSSPPPLPAKASRQLQVYRSKMDGEATSPLPRTRSGPLPSSSGSSSSSSQLSVATLGRSPSPKSALLTQNGTGSLPRNLAATLQDIETKRQLALQQKGQQVIEEQRRRLAELKQKAAAEAQCQWDALHGAAPFPAGPSGFPPLMHHSILHHLPAGRERGEEGEHAYDTLSLESSDSMETSISTGGNSACSPDNMSSASGLDMGKIEEMEKMLKEAHAEKNRLMESREREMELRRQALEEERRRREQVERRLQSESARRQQLVEKEVKMREKQFSQARPLTRYLPIRKEDFDLKTHIESSGHGVDTCLHVVLSSKVCRGYLVKMGGKIKSWKKRWFVFDRLKRTLSYYVDKHETKLKGVIYFQAIEEVYYDHLRSAAKKRFFRFTMVTESPNPALTFCVKTHDRLYYMVAPSAEAMRIWMDVIVTGAEGYTQFMN* FALSE FALSE NA NA TRUE hsa-mir-6716 chr11:118644000-118644079:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other FALSE NA NA NA NA NA NA NA NA NA 29498 KLHL18::RUNX3 ENSG00000114648.12::ENSG00000020633.19 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 658 FALSE NA FALSE NA KLHL18 ENSG00000114648.12 protein_coding + + chr3:47282917-47346816:+ chr3:47322708:+ chr3:47324407-47388306:+ chr3:47364198:+ RUNX3 ENSG00000020633.19 protein_coding - - chr1:24899511-24965121:- chr1:24902666:- chr1:25226002-25291612:- chr1:25229157:- chr3:47324267,chr3:47324266 chr1:24904003,chr1:24904004 NA NA chr3:47365757,chr3:47365756 chr1:25230494,chr1:25230495 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KLHL33-like_BTB_POZ|6-16|4.4^BTB|29-133|3.4e-35^SANBR_BTB|46-127|2.9e-07^KLHL33-like_BTB_POZ|66-127|3.8e-12^BACK|114-132|3.1^BACK|140-242|2.1e-39^SANBR_BTB|192-213|0.88^Kelch_1|278-323|1.3e-15^Kelch_2|279-322|1.1e-06^Kelch_4|282-322|2.6e-06^Kelch_6|283-326|2.4e-11^Kelch_5|287-310|0.072^Kelch_3|289-327|4.6e-09^PQQ_3|324-349|0.0026^Kelch_1|325-370|1.1e-21^Kelch_5|325-346|0.0015^Kelch_2|326-369|1.1e-10^Kelch_6|326-372|1.2e-11^Glu_cyclase_2|330-358|1^Kelch_4|335-370|1.1e-08^Kelch_3|336-374|2.6e-10^Glu_cyclase_2-PARTIAL|372-401~|1.6e-05^Kelch_1-PARTIAL|373-401~|1.3e-20^Kelch_2-PARTIAL|373-401~|2.1e-12^Kelch_5-PARTIAL|373-401~|3.7e-05^Kelch_6-PARTIAL|374-401~|5.8e-12^PQQ_3|376-394|0.11^Kelch_4-PARTIAL|379-401~|1e-07^Kelch_3-PARTIAL|383-401~|5.6e-09 none ["RUNX3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr1] 31 20 31 20 ONLY_REF_SPLICE YES_LDAS 0.6847 GT 1.9899 AG 1.9329 ENST00000232766.6 1-401 ENST00000308873.11 704-1248 chr3|+|[0]47282966-47283094[2]|[0]47319653-47319783[1]|[2]47322568-47322708[1]<==>chr1|-|[2]24902122-24902666[1] atggtggaggacggcgcggaggagctggaggatctggtgcacttctccgtgtctgagttgcctagtcgcggctacggcgtcatggaggagatccggcggcagggcaagctgtgcgacgtgaccctcaagattggggaccacaaattcagtgcccaccggattgtcttagcagcctcgatcccgtatttccatgctatgtttacaaatgacatgatggagtgcaagcaggatgagattgtaatgcaaggaatggacccaagtgccctggaggctctgatcaactttgcctacaacggcaaccttgccattgaccagcaaaatgtccagtcattgctgatgggggcgagcttcctgcagctgcagagcatcaaagacgcctgctgcacattccttcgagaacgGCACCTCGGAACTGAACCCATTCTCCGACCCCCGCCAGTTTGACCGCTCCTTCCCCACGCTGCCAACCCTCACGGAGAGCCGCTTCCCAGACCCCAGGATGCATTATCCCGGGGCCATGTCAGCTGCCTTCCCCTACAGCGCCACGCCCTCGGGCACGAGCATCAGCAGCCTCAGCGTGGCGGGCATGCCGGCCACCAGCCGCTTCCACCATACCTACCTCCCGCCACCCTACCCGGGGGCCCCGCAGAACCAGAGCGGGCCCTTCCAGGCCAACCCGTCCCCCTACCACCTCTACTACGGGACATCCTCTGGCTCCTACCAGTTCTCCATGGTGGCCGGCAGCAGCAGTGGGGGCGACCGCTCACCTACCCGCATGCTGGCCTCTTGCACCAGCAGCGCTGCCTCTGTCGCCGCCGGCAACCTCATGAACCCCAGCCTGGGCGGCCAGAGTGATGGCGTGGAGGCCGACGGCAGCCACAGCAACTCACCCACGGCCCTGAGCACGCCAGGCCGCATGGATGAGGCCGTGTGGCGGCCCTACTGA MVEDGAEELEDLVHFSVSELPSRGYGVMEEIRRQGKLCDVTLKIGDHKFSAHRIVLAASIPYFHAMFTNDMMECKQDEIVMQGMDPSALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERHLGTEPILRPPPV*PLLPHAANPHGEPLPRPQDALSRGHVSCLPLQRHALGHEHQQPQRGGHAGHQPLPPYLPPATLPGGPAEPERALPGQPVPLPPLLRDILWLLPVLHGGRQQQWGRPLTYPHAGLLHQQRCLCRRRQPHEPQPGRPE*WRGGRRQPQQLTHGPEHARPHG*GRVAALL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29499 FBXO22::UBE2Q2 ENSG00000167196.14::ENSG00000140367.12 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 660 FALSE NA FALSE NA FBXO22 ENSG00000167196.14 protein_coding + + chr15:75903876-75942511:+ chr15:75917394:+ chr15:76196217-76234852:+ chr15:76209735:+ UBE2Q2 ENSG00000140367.12 protein_coding + + chr15:75843307-75901078:+ chr15:75896995:+ chr15:76135648-76193419:+ chr15:76189336:+ chr15:75924159,chr15:75924160 chr15:75891541,chr15:75891539 NA NA chr15:76216500,chr15:76216501 chr15:76183882,chr15:76183880 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box_4|24-66|2.2e-05^F-box|28-61|2.2e-10^F-box-like|28-58|3.5e-10 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.00Mb];LOCAL_REARRANGEMENT:+:[2781] 28 16 28 12.81 ONLY_REF_SPLICE YES_LDAS 0.5479 GT 1.9219 AG 1.3996 ENST00000453211.6 1-628 ENST00000569423.5 925-1023 chr15|+|[0]75903964-75904103[1]|[2]75904491-75904629[2]|[0]75913203-75913290[0]|[1]75914110-75914205[0]|[1]75917230-75917394[0]<==>chr15|+|[0]75896995-75897061[0]|[1]75899427-75899458[2] atggagccggtaggctgctgcggcgagtgccgcggctcctccgtagacccgcggagcaccttcgtgttgagtaacctggcggaggtggtggagcgtgtgctcaccttcctgcccgccaaggcgttgctgcgggtggcctgcgtgtgccgcttatggagggagtgtgtgcgcagagtattgcggacccatcggagcgtaacctggatctccgcaggcctggcggaggccggccacctggaggggcattgcttggttcgcgtggtagcagaggagcttgagaatgttcgcatcttaccacatacagttctttacatggctgattcagaaactttcattagtctggaagagtgtcgtggccataagagagcaaggaaaagaactagtatggaaacagcacttgcccttgagaagctattccccaaacaatgccaagtccttgggattgtgaccccaggaattgtagtgactccaatgggatcaggtagcaatcgacctcaggaaatagaaattggagaatctggttttgctttattattccctcaaattgaaggaataaaaatacaaccctttcattttattaaggatccaaagaatttaacattagaaagacatcaactcactgaagtagAATCAATATAATCTAGCAAGAGCCCAACAATCCTATAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACCCCTCCAAAGGAAGATGGCTAA MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVLRTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKNLTLERHQLTEVESI*SSKSPTIL*FHCTDT*EKWLVHPSKGRWL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29500 PACSIN1::SRSF3 ENSG00000124507.11::ENSG00000112081.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 659 FALSE NA FALSE NA PACSIN1 ENSG00000124507.11 protein_coding + + chr6:34466061-34535229:+ chr6:34466270:+ chr6:34433838-34503006:+ chr6:34434047:+ SRSF3 ENSG00000112081.17 protein_coding + + chr6:36594353-36605600:+ chr6:36598849:+ chr6:36562130-36573377:+ chr6:36566626:+ chr6:34497870,chr6:34497869 chr6:36598457,chr6:36598453 NA NA chr6:34465647,chr6:34465646 chr6:36566234,chr6:36566230 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SRSF3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:2.06Mb] 27 7 27 7 ONLY_REF_SPLICE YES_LDAS 0.4565 GT 1.7232 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/arginine-rich splicing factor 3 1 follicular lymphoma leukaemia_lymphoma oncogene, fusion translocation 29502 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45128402:+ chr21:46493768-46646475:+ chr21:46548317:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr21] 22 6 22 3.88 ONLY_REF_SPLICE YES_LDAS 0.3475 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 29503 RAB11FIP3::DECR2 ENSG00000090565.17::ENSG00000242612.7 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471396:+ chr16:475649-573011:+ chr16:521396:+ DECR2 ENSG00000242612.7 protein_coding + + chr16:401858-412487:+ chr16:410216:+ chr16:451858-462487:+ chr16:460216:+ chr16:476868,chr16:476866 chr16:409569,chr16:409567 NA NA chr16:526868,chr16:526866 chr16:459569,chr16:459567 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_REARRANGEMENT:+:[13132] 22 29 22 24.67 INCL_NON_REF_SPLICE YES_LDAS 0.6266 GT 1.9656 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29508 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25167392:- chr6:25061854-25452491:- chr6:25167620:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr6] 14 20 14 12.91 ONLY_REF_SPLICE YES_LDAS 0.3613 GT 1.4566 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29509 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25166349:- chr6:25061854-25452491:- chr6:25166577:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr6] 11 16 11 5.44 ONLY_REF_SPLICE YES_LDAS 0.2207 GT 1.4566 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29510 SPARC::GLRA1 ENSG00000113140.11::ENSG00000145888.11 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 656 TRUE 1169 TRUE 447 SPARC ENSG00000113140.11 protein_coding - - chr5:151661096-151686975:- chr5:151666361:- chr5:151040657-151066536:- chr5:151045922:- GLRA1 ENSG00000145888.11 protein_coding - - chr5:151822513-151924851:- chr5:151822987:- chr5:151202074-151304412:- chr5:151202548:- chr5:151665203,chr5:151665205 chr5:151825364,chr5:151825364 NA NA chr5:151044764,chr5:151044766 chr5:151204925,chr5:151204925 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Kazal_2|71-83|0.89^FOLN|72-93|6.2e-13^hEGF|77-96|0.00023^Kazal_1|95-149|8.7e-15^Kazal_2|98-149|8.6e-14^CFAI_KAZAL|109-134|1.2e-05^SPARC_Ca_bdg|153-289|2.2e-40^EF-hand_1|244-252|0.6^Kazal_1|263-280|0.081^Kazal_2|263-281|0.33^EF-hand_1|269-288|0.00021 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.14Mb] 11 39 11 7.66 ONLY_REF_SPLICE YES_LDAS 0.2505 GT 1.8892 AG 1.9899 ENST00000231061.9 1-734 ENST00000455880.2 1060-1374 chr5|-|[1]151666361-151666509[0]|[2]151667467-151667600[1]|[0]151669664-151669784[0]|[2]151671573-151671694[1]|[0]151673129-151673216[0]|[2]151674612-151674674[0]|[2]151676132-151676188[0]<==>chr5|-|[2]151822673-151822987[0] atgagggcctggatcttctttctcctttgcctggccgggagggccttggcagcccctcagcaagaagccctgcctgatgagacagaggtggtggaagaaactgtggcagaggtgactgaggtatctgtgggagctaatcctgtccaggtggaagtaggagaatttgatgatggtgcagaggaaaccgaagaggaggtggtggcggaaaatccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggatgagaacaacacccccatgtgcgtgtgccaggaccccaccagctgcccagcccccattggcgagtttgagaaggtgtgcagcaatgacaacaagaccttcgactcttcctgccacttctttgccacaaagtgcaccctggagggcaccaagaagggccacaagctccacctggactacatcgggccttgcaaatacatccccccttgcctggactctgagctgaccgaattccccctgcgcatgcgggactggctcaagaacgtcctggtcaccctgtatgagagggatgaggacaacaaccttctgactgagaagcagaagctgcgggtgaagaagatccatgagaatgagaagcgcctggaggcaggagaccaccccgtggagctgctggcccgggacttcgagaagaactataacatgtacatcttccctgtacactggcagttcggccagctggaccagcaccccattgacggAGCCCCATGTTGAATCTATTCCAGGAGGATGAAGCTGGAGAAGGCCGCTTTAACTTCTCTGCCTATGGGATGGGCCCAGCCTGTCTACAGGCCAAGGATGGCATCTCAGTCAAGGGCGCCAACAACAGTAACACCACCAACCCCCCTCCTGCACCATCTAAGTCCCCAGAGGAGATGCGAAAACTCTTCATCCAGAGGGCCAAGAAGATCGACAAAATATCCCGCATTGGCTTCCCCATGGCCTTCCTCATTTTCAACATGTTCTACTGGATCATCTACAAGATTGTCCGTAGAGAGGACGTCCACAACCAGTGA MRAWIFFLLCLAGRALAAPQQEALPDETEVVEETVAEVTEVSVGANPVQVEVGEFDDGAEETEEEVVAENPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGAPC*IYSRRMKLEKAALTSLPMGWAQPVYRPRMASQSRAPTTVTPPTPLLHHLSPQRRCENSSSRGPRRSTKYPALASPWPSSFSTCSTGSSTRLSVERTSTTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29511 PPP1R26-AS1::GLT6D1 ENSG00000225361.4::ENSG00000204007.8 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 667 FALSE NA FALSE NA PPP1R26-AS1 ENSG00000225361.4 lncRNA - - chr9:135462727-135480777:- chr9:135480673:- chr9:138354573-138372623:- chr9:138372519:- GLT6D1 ENSG00000204007.8 protein_coding - - chr9:135623648-135639540:- chr9:135631478:- chr9:138515494-138531386:- chr9:138523324:- chr9:135462869,chr9:135462873 chr9:135634390,chr9:135634391 NA NA chr9:138354715,chr9:138354719 chr9:138526236,chr9:138526237 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.14Mb] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1343 GT 1.7056 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29512 FKTN::SLC44A1 ENSG00000106692.15::ENSG00000070214.17 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 666 FALSE NA FALSE NA FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105558165:+ chr9:108320403-108416101:+ chr9:108320446:+ SLC44A1 ENSG00000070214.17 protein_coding + + chr9:105244622-105439171:+ chr9:105335563:+ chr9:108006903-108201452:+ chr9:108097844:+ chr9:105568519,chr9:105568519,chr9:105568516 chr9:105315969,chr9:105315981,chr9:105315963 NA NA chr9:108330800,chr9:108330800,chr9:108330797 chr9:108078250,chr9:108078262,chr9:108078244 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.12Mb] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1343 GT 1.8323 AG 1.4256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29513 SAE1::ARHGAP35 ENSG00000142230.13::ENSG00000160007.20 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SAE1 ENSG00000142230.13 protein_coding + + chr19:47113274-47210636:+ chr19:47155213:+ chr19:47616531-47713893:+ chr19:47658470:+ ARHGAP35 ENSG00000160007.20 protein_coding + + chr19:46860997-47005077:+ chr19:46918488:+ chr19:47364254-47508334:+ chr19:47421745:+ chr19:47156798,chr19:47157149,chr19:47156792 chr19:46874342,chr19:46874527,chr19:46874333 NA NA chr19:47660055,chr19:47660406,chr19:47660049 chr19:47377599,chr19:47377784,chr19:47377590 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","TCGA_StarF2019"];INTRACHROMOSOMAL[chr19:0.11Mb] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1879 GT 1.7968 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 47673180 FALSE 47491246 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 35 1 Yes endometrial carcinoma epithelial TSG nonsense, missense, frameshift, other 29515 MTIF2::CCDC88A ENSG00000085760.15::ENSG00000115355.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 665 FALSE NA FALSE NA MTIF2 ENSG00000085760.15 protein_coding - - chr2:55236595-55269347:- chr2:55240011:- chr2:55463731-55496483:- chr2:55467147:- CCDC88A ENSG00000115355.18 protein_coding - - chr2:55287842-55419895:- chr2:55309254:- chr2:55514978-55647031:- chr2:55536390:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FeoB_N|85-108|1.2^SRPRB|139-155|4.1^TniB|178-228|7.7e-05^SRPRB|180-305|1.1e-07^GTP_EFTU|182-341|7.3e-36^MMR_HSR1|183-289|7.4e-13^FeoB_N|183-309|3e-07^Roc|183-291|1.4e-06^Dynamin_N|183-216|0.0097^PduV-EutP|183-304|0.00066^Ras|184-302|3.1e-08^Arf|184-333|5.7e-07^ATP_bind_1|185-202|2.3^ATP_bind_1|203-300|0.0002^Dynamin_N|225-289|0.00096^GTP_EFTU_D2|369-388|0.024^GTP_EFTU_D4|378-418|4.5^Dynamin_N|442-480|0.095^IF-2|508-606|4.6e-32^PQQ|563-582|0.00076^GTP_EFTU_D4|568-582|6.2^Arf|624-652|5.7^GTP_EFTU_D4|642-700|0.00021^GTP_EFTU_D2|643-707|0.00025^PQQ|663-670|1.4 none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.02Mb];LOCAL_REARRANGEMENT:-:[18495] 8 1 8 1 ONLY_REF_SPLICE YES_LDAS 0.1208 GT 1.8062 AG 1.5058 ENST00000403721.5 1-1870 ENST00000426576.6 1605-3609 chr2|-|[0]55240011-55240175[1]|[0]55242940-55243080[1]|[0]55243416-55243668[0]|[2]55244029-55244233[2]|[1]55246337-55246461[0]|[2]55249395-55249534[1]|[0]55252477-55252653[1]|[0]55254041-55254201[2]|[1]55254654-55254825[1]|[0]55262316-55262427[0]|[2]55263640-55263858[0]<==>chr2|-|[2]55295064-55296056[0]|[2]55296258-55296523[1]|[0]55299839-55299919[1]|[0]55301206-55301277[1]|[0]55301872-55302072[1]|[0]55303069-55303152[1]|[0]55308809-55309023[2]|[1]55309162-55309254[2] atgaaccagaagctactgaagttggagaacttgctacgatttcacactatttataggcaactgcacagtctgtgtcaaagaagagcattaagacagtggaggcatgggttttcatctgcttaccctgtgtggacagctcaactgtgtgcctggccctggccaacagatgtgctcactggggctgctttatctcagtataggcttctagtaacaaaaaaggaagaaggaccatggaaatctcagttatcttcaacaaaatctaaaaaggtggtagaagtatggattggaatgactattgaggaactggccagggcaatggaaaaaaacacagattatgtatatgaagctttattgaacactgatattgacatagattcactggaagcagactcacatttagatgaagtctggatcaaagaagtgataacgaaggcagggatgaagttaaagtggagtaaattaaaacaggacaaagtcagaaaaaataaagatgctgtaagaaggccccaggcagatccagctttattaaccccaaggtccccagttgttactataatgggccatgttgatcacgggaaaacgacattacttgacaaatttcgaaaaactcaagtggcagcagtggaaactggaggcatcactcagcacattggtgcctttcttgtctctctgccttctggggaaaagataacttttcttgatactccaggacatgctgctttctcagcaatgagagccagaggtgctcaggtcactgacattgtcgtattggttgtagctgcagatgatggagtgatgaaacaaactgtagaatctattcagcatgccaaagatgcacaggttcctattatccttgccgtaaataaatgtgacaaagctgaggctgatcctgagaaagtgaaaaaagagctgctggcttacgatgtggtatgtgaagattatggaggtgatgttcaagcagtgcctgtctccgcacttacgggcgataatctgatggctttggcagaagcaacagttgctcttgcagaaatgttagaattgaaagcagatcccaatggtccagtggaaggaacagtaatagagtctttcacagacaaaggaagaggtcttgttactacagctataattcaaagaggaactttaagaaaaggctctgttctggttgctggaaaatgttgggcaaaagtacgcttaatgtttgatgaaaatggaaaaacaattgatgaggcctatcccagcatgccagtgggaattacaggctggagagaccttccttctgcaggagaagaaattcttgaagtagaatctgagccaagggcacgtgaagttgttgactggaggaaatatgaacaagaacaggagaaaggtcaggaggatctgaaaataatagaagaaaagcgaaaggaacacaaagaagcacatcagaaagcccgtgagaagtatggccatctactgtggaagaagagatcaattctacggtttttagaaagaaaagaacaaatacccttaaagccaaaagagaaaagggaaagagattcaaatgtactttctgtgattattaaaggtgatgttgatggttctgttgaggccattttgaacattatagatacctatgatgcttcacacgagtgtgaactagaattagtacattttggagtgggtgatgtaagtgcaaatgatgttaaccttgctgaaacatttgatggtgttatatatggctttaatgtgaatgcaggcaatgttatccaacagtcagctgcaaaaaaaggagtaaaaattaaacttcacaaaataatttaccgtcttgttgaagatttgcaagaggaactgagcagcagattaccctgtgctgtggaagagcacccagtagTGATAAGTTAAATGAATTAAGACGTCAGAAGGAGAAACTAGAAGAGAAAATTATGGATCAATACAAATTTTATGACCCATCTCCTCCTAGAAGGAGAGGCAACTGGATTACTCTAAAAATGAGAAAATTGATAAAGTCTAAGAAAGATATTAATCGGGAACGCCAGAAATCTCTAACATTAACACCCACCCGCTCAGACTCCAGTGAAGGATTTCTTCAGCTCCCTCATCAAGACAGTCAAGATAGTTCTTCAGTAGGTTCAAACTCTTTAGAAGATGGCCAGACCTTGGGGACCAAGAAAAGCAGCATGGTTGCACTGAAAAGACTGCCCTTTTTGAGGAACAGACCGAAGGATAAAGACAAAATGAAGGCCTGCTACCGTCGTTCCATGTCCATGAATGACCTGGTGCAGTCCATGGTCCTAGCAGGACAGTGGACAGGTAGTACTGAGAATTTGGAGGTTCCTGATGATATTTCAACGGGTAAAAGGAGAAAAGAATTGGGAGCTATGGCCTTCTCTACTACAGCCATCAACTTTTCAACTGTCAACTCTTCTGCAGGCTTCAGATCCAAGCAGTTGGTTAATAATAAAGATACTACATCCTTTGAAGACATAAGTCCACAAGGTGTTAGTGATGATTCTAGTACGGGATCAAGAGTTCATGCTTCAAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACTAGCAATAGCAATAATAATGCTTCACTACATGAAGTCAAAGCAGGTGCAGTTAATAACCAAAGCAGGCCACAAAGCCACAGCAGTGGAGAATTTAGCCTGCTTCATGACCATGAGGCTTGGTCCAGCAGTGGTAGCAGTCCAATCCAGTACTTGAAAAGACAGACCAGATCAAGCCCAGTGCTCCAGCACAAAATATCTGAAACACTGGAGAGTCGACATCACAAGATCAAAACTGGTTCCCCTGGAAGTGAAGTTGTTACTCTACAACAGTTTTTGGAAGAAAGCAATAAGCTTACCTCAGTACAGATAAAGTCCTCAAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTCTGTCTCTTCTGACTTTTTGGGAAAAGACAAACCAGTTAGCTGTGGTCTGGCCAGGTCAGTAAGTGGAAAAACCCCAGGGGACTTCTATGATAGACGGACAACTAAGCCTGAGTTTTTGAGACCTGGTCCTCGAAAAACTGAAGATACCTACTTCATTAGTTCTGCGGGAAAACCTACACCAGGCACTCAAGGAAAAATAAAATTAGTAAAAGAATCTTCTCTGTCACGACAATCAAAAGATAGTAACCCTTATGCAACTTTACCTCGTGCAAGCAGCGTGATCTCAACTGCCGAAGGAACTACACGAAGGACAAGCATCCATGATTTTTTGACCAAGGACAGTAGACTGCCTATATCAGTTGATTCACCACCAGCTGCTGCTGACAGCAACACCACTGCAGCATCTAGTGAGTACCATTTACACCAGTGGTCCTCTCATATACTTGACATCCCAACACATACTATAGGTTCTTGTGCCCAAAATGATTTAGCTATAGACATGCCTGAGCCTCTATATGCCCAGGCTAGAAACTCAAGAACAGGAAGGTCACATTTTCTAAACCAAACTTTTGCCACTATTAGGATGCCTAGTGATGCATTCGGAATGTTGGCAAAAGATAGCATAGGACCATTTACTGTGGCCCATTCATCTCAGCCATTCTTATCCCTGAATACAGAATTAGTTAGTAACATAAGTGGGTTACCTCCTAGGCCAGTTATCAGAATAACTGACCAGGCTTCTGCCTCTTTGGATAAACCTGCACAGAAAGAAAATGAACAGTTTTCTGATCATCAGAACCCTAGTAACAGTAACCTACAGTTTTCTATAAATAGCAACAATCTTGTCACTTCTGCATGCCTCTATCCTGATGACACAGAAGCTGCATTGTTGGTTTCTGAGGATAATCAAACTGTTTGGTATGAATATGGTTGTATATGA MNQKLLKLENLLRFHTIYRQLHSLCQRRALRQWRHGFSSAYPVWTAQLCAWPWPTDVLTGAALSQYRLLVTKKEEGPWKSQLSSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEALLNTDIDIDSLEADSHLDEVWIKEVITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRLMFDENGKTIDEAYPSMPVGITGWRDLPSAGEEILEVESEPRAREVVDWRKYEQEQEKGQEDLKIIEEKRKEHKEAHQKAREKYGHLLWKKRSILRFLERKEQIPLKPKEKRERDSNVLSVIIKGDVDGSVEAILNIIDTYDASHECELELVHFGVGDVSANDVNLAETFDGVIYGFNVNAGNVIQQSAAKKGVKIKLHKIIYRLVEDLQEELSSRLPCAVEEHPVVIS*MN*DVRRRN*KRKLWINTNFMTHLLLEGEATGLL*K*EN**SLRKILIGNARNL*H*HPPAQTPVKDFFSSLIKTVKIVLQ*VQTL*KMARPWGPRKAAWLH*KDCPF*GTDRRIKTK*RPATVVPCP*MTWCSPWS*QDSGQVVLRIWRFLMIFQRVKGEKNWELWPSLLQPSTFQLSTLLQASDPSSWLIIKILHPLKT*VHKVLVMILVRDQEFMLQDQPALIVAEHPLAIAIIMLHYMKSKQVQLITKAGHKATAVENLACFMTMRLGPAVVAVQSST*KDRPDQAQCSSTKYLKHWRVDITRSKLVPLEVKLLLYNSFWKKAISLPQYR*SPQVKRIF*MK**KVCLSLLTFWEKTNQLAVVWPGQ*VEKPQGTSMIDGQLSLSF*DLVLEKLKIPTSLVLRENLHQALKEK*N**KNLLCHDNQKIVTLMQLYLVQAA*SQLPKELHEGQASMIF*PRTVDCLYQLIHHQLLLTATPLQHLVSTIYTSGPLIYLTSQHIL*VLVPKMI*L*TCLSLYMPRLETQEQEGHIF*TKLLPLLGCLVMHSECWQKIA*DHLLWPIHLSHSYP*IQN*LVT*VGYLLGQLSE*LTRLLPLWINLHRKKMNSFLIIRTLVTVTYSFL*IATILSLLHASILMTQKLHCWFLRIIKLFGMNMVVY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29518 CREBBP::ADARB1 ENSG00000005339.15::ENSG00000197381.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1177 TRUE 453 CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- ADARB1 ENSG00000197381.18 protein_coding + + chr21:45073853-45226560:+ chr21:45118564:+ chr21:46493768-46646475:+ chr21:46538479:+ chr16:3837338,chr16:3837341 chr21:45075440,chr21:45075437 NA NA chr16:3887339,chr16:3887342 chr21:46495355,chr21:46495352 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr21] 7 8 7 2.88 ONLY_REF_SPLICE YES_LDAS 0.1327 GT 1.7465 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 29520 YTHDF2::CMAHP ENSG00000198492.16::ENSG00000168405.18 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1172 TRUE 449 YTHDF2 ENSG00000198492.16 protein_coding + + chr1:28736621-28769775:+ chr1:28743986:+ chr1:29063133-29096287:+ chr1:29070498:+ CMAHP ENSG00000168405.18 transcribed_unitary_pseudogene - - chr6:25061626-25452263:- chr6:25137823:- chr6:25061854-25452491:- chr6:25138051:- chr1:28745234,chr1:28745232,chr1:28745228 chr6:25221831,chr6:25221838,chr6:25221838 NA NA chr1:29071746,chr1:29071744,chr1:29071740 chr6:25222059,chr6:25222066,chr6:25222066 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr6] 6 11 6 1.65 ONLY_REF_SPLICE YES_LDAS 0.1028 GT 1.4566 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29523 SPC24::DOCK6 ENSG00000161888.12::ENSG00000130158.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 663 FALSE NA FALSE NA SPC24 ENSG00000161888.12 protein_coding - - chr19:11131520-11155807:- chr19:11147870:- chr19:11242196-11266483:- chr19:11258546:- DOCK6 ENSG00000130158.14 protein_coding - - chr19:11199295-11262524:- chr19:11204331:- chr19:11309971-11373200:- chr19:11315007:- chr19:11147541,chr19:11147634,chr19:11147638 chr19:11205724,chr19:11205788,chr19:11205789 NA NA chr19:11258217,chr19:11258310,chr19:11258314 chr19:11316400,chr19:11316464,chr19:11316465 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF4404|20-55|0.12^FUSC|21-186|0.00023^KxDL|22-85|0.0028^AAA_23|26-125|0.0044^Lipoprotein_20|34-122|0.00027^Spc24|35-63|1^DUF1400|37-114|0.00016^PilO|42-146|0.00021^DUF489|45-147|1.2e-06^Myosin_tail_1|47-121|1.8e-06^V_ATPase_I|53-128|0.0023^YabA|59-144|0.00019^DUF724|64-121|0.11^DUF724|64-130|0.0032^DUF4404|79-123|0.0006^Spc24|83-146|9.2e-08^KxDL|94-126|0.031 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.04Mb];LOCAL_REARRANGEMENT:-:[43487] 6 11 6 9.38 ONLY_REF_SPLICE YES_LDAS 0.2065 GT 1.5219 AG 1.7968 ENST00000585567.5 1-435 ENST00000294618.12 5089-6144 chr19|-|[2]11147870-11147894[2]|[1]11148013-11148117[2]|[1]11149094-11149238[1]|[0]11155617-11155776[0]<==>chr19|-|[2]11199497-11199539[2]|[1]11200308-11200469[2]|[1]11200716-11200822[0]|[2]11200909-11201052[0]|[2]11201889-11202125[0]|[2]11202394-11202483[0]|[2]11202584-11202709[0]|[2]11204081-11204095[0]|[2]11204200-11204331[0] atggccgccttccgcgacatagaggaggtgagccaggggctgctcagcctgctgggcgccaaccgcgcggaggcgcagcagcgacggctgctggggcgccacgagcaggtggtggagcggctgctggaaacgcaagacggtgccgagaagcagctgcgagagatcctcaccatggagaaggaagtggcccagagccttctcaatgcgaaggagcaggtgcaccagggaggcgtggagctgcagcagctggaagctgggcttcaggaggctggggaggaggacacccgtctgaaggccagcctccttcagctcaccagagagctggaagagctcaaggagattgaggcggatctggagcgacaggagaaggaggtcgacgaggacacgacagtcacaatcccctcggccgtgtacgtggctcaactttaccaccaaGGCGGGCTCTACGAGGCGGTGAATGAGGTCTACAAGAACCTCATCCCCATCCTGGAAGCCCACCGTGACTACAAGAAGCTGGCCGCGGTGCACGGCAAACTGCAGGAGGCCTTCACCAAGATCATGCACCAGAGTTCCGGCTGGGAGCGCGTGTTCGGGACGTATTTCCGCGTGGGCTTCTACGGCGCCCACTTCGGTGACCTGGATGAGCAGGAGTTTGTGTACAAGGAGCCATCGATCACGAAGCTGGCAGAGATCTCACACCGGCTGGAGGAGTTCTACACGGAGAGATTTGGCGACGACGTCGTTGAGATTATCAAAGACTCTAACCCTGTGGACAAGTCCAAGCTTGACTCACAAAAGGCCTACATCCAGATCACGTATGTGGAACCGTACTTTGATACCTACGAGCTCAAGGACCGGGTGACCTACTTTGACCGCAACTATGGGCTTCGCACATTCCTGTTCTGCACGCCGTTCACGCCGGATGGGCGCGCACACGGGGAGCTGCCCGAGCAACACAAGCGTAAGACGCTGCTCAGCACCGACCACGCCTTCCCCTACATCAAGACTCGCATCCGTGTGTGCCACCGGGAGGAGACGGTGCTGACGCCAGTGGAGGTGGCCATCGAGGACATGCAGAAGAAGACACGGGAGCTGGCCTTTGCCACCGAGCAGGACCCACCAGATGCTAAGATGCTACAGATGGTGCTTCAGGGCTCTGTAGGGCCCACCGTGAACCAGGGTCCCCTGGAGGTGGCCCAGGTGTTTTTAGCAGAGATCCCGGAAGACCCCAAGCTCTTCCGGCATCACAACAAATTGCGGCTCTGCTTCAAGGACTTCTGCAAGAAATGTGAGGATGCGCTGCGGAAAAATAAGGCCCTGATTGGGCCGGACCAGAAGGAGTACCACCGTGAGCTGGAGCGCAACTACTGCCGCCTGCGGGAGGCTCTGCAGCCCCTGCTTACCCAGCGCCTGCCCCAGCTGATGGCACCCACCCCACCCGGCCTCAGGAACTCCTTGAACAGAGCAAGTTTCCGAAAGGCAGACCTCTGA MAAFRDIEEVSQGLLSLLGANRAEAQQRRLLGRHEQVVERLLETQDGAEKQLREILTMEKEVAQSLLNAKEQVHQGGVELQQLEAGLQEAGEEDTRLKASLLQLTRELEELKEIEADLERQEKEVDEDTTVTIPSAVYVAQLYHQGGLYEAVNEVYKNLIPILEAHRDYKKLAAVHGKLQEAFTKIMHQSSGWERVFGTYFRVGFYGAHFGDLDEQEFVYKEPSITKLAEISHRLEEFYTERFGDDVVEIIKDSNPVDKSKLDSQKAYIQITYVEPYFDTYELKDRVTYFDRNYGLRTFLFCTPFTPDGRAHGELPEQHKRKTLLSTDHAFPYIKTRIRVCHREETVLTPVEVAIEDMQKKTRELAFATEQDPPDAKMLQMVLQGSVGPTVNQGPLEVAQVFLAEIPEDPKLFRHHNKLRLCFKDFCKKCEDALRKNKALIGPDQKEYHRELERNYCRLREALQPLLTQRLPQLMAPTPPGLRNSLNRASFRKADL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29525 NUBP2::EME2 ENSG00000095906.17::ENSG00000197774.14 CAOV3 SRR8615507 SRR8639190 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NUBP2 ENSG00000095906.17 protein_coding + + chr16:1782932-1789186:+ chr16:1786655:+ chr16:1832933-1839187:+ chr16:1836656:+ EME2 ENSG00000197774.14 protein_coding + + chr16:1772810-1781708:+ chr16:1779985:+ chr16:1822811-1831709:+ chr16:1829986:+ chr16:1787291,chr16:1787291,chr16:1787292 chr16:1779091,chr16:1779092,chr16:1779089 NA NA chr16:1837292,chr16:1837292,chr16:1837293 chr16:1829092,chr16:1829093,chr16:1829090 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.00Mb];LOCAL_REARRANGEMENT:+:[1193] 5 8 5 8 INCL_NON_REF_SPLICE YES_LDAS 0.1745 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29528 CREBBP::TRAP1 ENSG00000005339.15::ENSG00000126602.11 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 669 FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- TRAP1 ENSG00000126602.11 protein_coding - - chr16:3651639-3717553:- chr16:3690985:- chr16:3701640-3767554:- chr16:3740986:- chr16:3818993 chr16:3706503 NA NA chr16:3868994 chr16:3756504 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Creb_binding|106-159|10^Creb_binding|322-340|9.7^zf-TAZ|354-405|1.6e-12^Creb_binding|443-482|0.096^KIX|550-629|4.6e-42^KIX_2|552-632|5.9e-10^Creb_binding|743-743|10 HATPase_c_3|110-221|1.8e-13^HATPase_c|113-258|3.4e-09^HSP90|263-288|2e-06^HSP90|291-702|4.3e-99 ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["TRAP1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];NEIGHBORS[7457] 58 61 58 61 ONLY_REF_SPLICE YES_LDAS 1.3135 GT 1.7465 AG 1.8892 ENST00000382070.7 1-798 ENST00000246957.10 89-2115 chr16|-|[2]3850297-3851009[1]|[0]3879832-3879916[0]<==>chr16|-|[2]3658129-3658230[0]|[2]3658793-3658865[2]|[1]3661987-3662132[0]|[2]3662882-3662967[1]|[0]3663424-3663562[0]|[2]3664274-3664459[0]|[2]3665971-3666118[2]|[1]3671722-3671791[1]|[0]3672700-3672820[0]|[2]3674339-3674494[0]|[2]3675324-3675397[1]|[0]3676036-3676145[2]|[1]3677498-3677658[0]|[2]3679719-3679790[0]|[2]3685996-3686136[0]|[2]3689055-3689137[1]|[0]3690827-3690985[1] atggctgagaacttgctggacggaccgcccaaccccaaaagagccaaactcagctcgcccggtttctcggcgaatgacagcacagattttggatcattgtttgacttggaaaatgatcttcctgatgagctgatacccaatggaggagaattaggccttttaaacagtgggaaccttgttccagatgctgcttccaaacataaacaactgtcggagcttctacgaggaggcagcggctctagtatcaacccaggaataggaaatgtgagcgccagcagccccgtgcagcagggcctgggtggccaggctcaagggcagccgaacagtgctaacatggccagcctcagtgccatgggcaagagccctctgagccagggagattcttcagcccccagcctgcctaaacaggcagccagcacctctgggcccacccccgctgcctcccaagcactgaatccgcaagcacaaaagcaagtggggctggcgactagcagccctgccacgtcacagactggacctggtatctgcatgaatgctaactttaaccagacccacccaggcctcctcaatagtaactctggccatagcttaattaatcaggcttcacaagggcaggcgcaagtcatgaatggatctcttggggctgctggcagaggaaggggagctggaatgccgtaccctactccagccatgcagggcgcctcgagcagcgtgctggctgagaccctaacgcaggtttccccgcaaatgactggtcacgcgggactgaacaccgcacaggcaggaggcatggccaagGAAAACCAATTCTGTGTCCTCGGAGGACCACAGCCCAGTTGGGCCCCAGGCGAAACCCAGCCTGGAGCTTGCAGGCAGGACGACTGTTCAGCACGCAGACCGCCGAGGACAAGGAGGAACCCCTGCACTCGATTATCAGCAGCACAGAGAGCGTGCAGGGTTCCACTTCCAAACATGAGTTCCAGGCCGAGACAAAGAAGCTTTTGGACATTGTTGCCCGGTCCCTGTACTCAGAAAAAGAGGTGTTTATACGGGAGCTGATCTCCAATGCCAGCGATGCCTTGGAAAAACTGCGTCACAAACTGGTGTCTGACGGCCAAGCACTGCCAGAAATGGAGATTCACTTGCAGACCAATGCCGAGAAAGGCACCATCACCATCCAGGATACTGGTATCGGGATGACACAGGAAGAGCTGGTGTCCAACCTGGGGACGATTGCCAGATCGGGGTCAAAGGCCTTCCTGGATGCTCTGCAGAACCAGGCTGAGGCCAGCAGCAAGATCATCGGCCAGTTTGGAGTGGGTTTCTACTCAGCTTTCATGGTGGCTGACAGAGTGGAGGTCTATTCCCGCTCGGCAGCCCCGGGGAGCCTGGGTTACCAGTGGCTTTCAGATGGTTCTGGAGTGTTTGAAATCGCCGAAGCTTCGGGAGTTAGAACCGGGACAAAAATCATCATCCACCTGAAATCCGACTGCAAGGAGTTTTCCAGCGAGGCCCGGGTGCGAGATGTGGTAACGAAGTACAGCAACTTCGTCAGCTTCCCCTTGTACTTGAATGGAAGGCGGATGAACACCTTGCAGGCCATCTGGATGATGGACCCCAAGGATGTCCGTGAGTGGCAACATGAGGAGTTCTACCGCTACGTCGCGCAGGCTCACGACAAGCCCCGCTACACCCTGCACTATAAGACGGACGCACCGCTCAACATCCGCAGCATCTTCTACGTGCCCGACATGAAACCGTCCATGTTTGATGTGAGCCGGGAGCTGGGCTCCAGCGTTGCACTGTACAGCCGCAAAGTCCTCATCCAGACCAAGGCCACGGACATCCTGCCCAAGTGGCTGCGCTTCATCCGAGGTGTGGTGGACAGTGAGGACATTCCCCTGAACCTCAGCCGGGAGCTGCTGCAGGAGAGCGCACTCATCAGGAAACTCCGGGACGTTTTACAGCAGAGGCTGATCAAATTCTTCATTGACCAGAGTAAAAAAGATGCTGAGAAGTATGCAAAGTTTTTTGAAGATTACGGCCTGTTCATGCGGGAGGGCATTGTGACCGCCACCGAGCAGGAGGTCAAGGAGGACATAGCAAAGCTGCTGCGCTACGAGTCCTCGGCGCTGCCCTCCGGGCAGCTAACCAGCCTCTCAGAATACGCCAGCCGCATGCGGGCCGGCACCCGCAACATCTACTACCTGTGCGCCCCCAACCGTCACCTGGCAGAGCACTCACCCTACTATGAGGCCATGAAGAAGAAAGACACAGAGGTTCTCTTCTGCTTTGAGCAGTTTGATGAGCTCACCCTGCTGCACCTTCGTGAGTTTGACAAGAAGAAGCTGATCTCTGTGGAGACGGACATAGTCGTGGATCACTACAAGGAGGAGAAGTTTGAGGACAGGTCCCCAGCCGCCGAGTGCCTATCAGAGAAGGAGACGGAGGAGCTCATGGCCTGGATGAGAAATGTGCTGGGGTCGCGTGTCACCAACGTGAAGGTGACCCTCCGACTGGACACCCACCCTGCCATGGTCACCGTGCTGGAGATGGGGGCTGCCCGCCACTTCCTGCGCATGCAGCAGCTGGCCAAGACCCAGGAGGAGCGCGCACAGCTCCTGCAGCCCACGCTGGAGATCAACCCCAGGCACGCGCTCATCAAGAAGCTGAATCAGCTGCGCGCAAGCGAGCCTGGCCTGGCTCAGCTGCTGGTGGATCAGATATACGAGAACGCCATGATTGCTGCTGGACTTGTTGACGACCCTAGGGCCATGGTGGGCCGCTTGAATGAGCTGCTTGTCAAGGCCCTGGAGCGACACTGA MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKENQFCVLGGPQPSWAPGETQPGACRQDDCSARRPPRTRRNPCTRLSAAQRACRVPLPNMSSRPRQRSFWTLLPGPCTQKKRCLYGS*SPMPAMPWKNCVTNWCLTAKHCQKWRFTCRPMPRKAPSPSRILVSG*HRKSWCPTWGRLPDRGQRPSWMLCRTRLRPAARSSASLEWVSTQLSWWLTEWRSIPARQPRGAWVTSGFQMVLECLKSPKLRELEPGQKSSST*NPTARSFPARPGCEMW*RSTATSSASPCT*MEGG*TPCRPSG*WTPRMSVSGNMRSSTATSRRLTTSPATPCTIRRTHRSTSAASSTCPT*NRPCLM*AGSWAPALHCTAAKSSSRPRPRTSCPSGCASSEVWWTVRTFP*TSAGSCCRRAHSSGNSGTFYSRG*SNSSLTRVKKMLRSMQSFLKITACSCGRAL*PPPSRRSRRT*QSCCATSPRRCPPGS*PASQNTPAACGPAPATSTTCAPPTVTWQSTHPTMRP*RRKTQRFSSALSSLMSSPCCTFVSLTRRS*SLWRRT*SWITTRRRSLRTGPQPPSAYQRRRRRSSWPG*EMCWGRVSPT*R*PSDWTPTLPWSPCWRWGLPATSCACSSWPRPRRSAHSSCSPRWRSTPGTRSSRS*ISCAQASLAWLSCWWIRYTRTP*LLLDLLTTLGPWWAA*MSCLSRPWSDT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 29535 CDC37L1::JAK2 ENSG00000106993.12::ENSG00000096968.14 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 678 FALSE NA FALSE NA CDC37L1 ENSG00000106993.12 protein_coding + + chr9:4679559-4708399:+ chr9:4685158:+ chr9:4679559-4708399:+ chr9:4685158:+ JAK2 ENSG00000096968.14 protein_coding + + chr9:4984390-5129948:+ chr9:5044403:+ chr9:4984390-5129948:+ chr9:5044403:+ chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA chr9:4685603,chr9:4685603 chr9:5031426,chr9:5031423 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PBDC1|137-189|6.7e-06^CDC37_M|148-168|0.12^CDC37_M|174-271|1.7e-16^PBDC1|247-267|0.26 Pkinase-PARTIAL|~351-397|1.9^Jak1_Phl-PARTIAL|~351-381|2e-23^FERM_C_FAK1-PARTIAL|~351-380|3e-07^SH2|401-481|6.7e-10^PK_Tyr_Ser-Thr|546-805|4.4e-69^Pkinase|548-802|1.1e-24^RIO1|621-684|0.013^Kinase-like|726-764|0.83^PK_Tyr_Ser-Thr|849-1120|1.3e-89^Pkinase|851-1119|5.4e-54^RIO1|896-995|0.0005^ABC1|927-1005|4.8e-07^Kinase-like|941-1047|1.4e-05^FERM_F1|1018-1029|8.9 ["JAK2:Oncogene","JAK2:OncomapV4_panel","JAK2:OncocartaV1_panel","JAK2:ArcherDX_panel","JAK2:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.28Mb] 25 5 25 5 ONLY_REF_SPLICE YES_LDAS 0.3312 GT 1.5058 AG 1.6402 ENST00000381858.5 1-414 ENST00000381652.4 351-3399 chr9|+|[0]4679768-4679899[2]|[0]4684877-4685158[2]<==>chr9|+|[2]5044403-5044520[2]|[0]5050686-5050831[1]|[2]5054563-5054884[2]|[0]5055669-5055788[2]|[0]5064883-5065040[1]|[2]5066678-5066789[2]|[0]5069022-5069208[0]|[1]5069925-5070052[2]|[0]5072492-5072626[2]|[0]5073698-5073785[0]|[1]5077453-5077580[2]|[0]5078306-5078444[0]|[1]5080229-5080380[2]|[0]5080533-5080683[0]|[1]5081725-5081861[2]|[0]5089674-5089863[0]|[1]5090446-5090570[2]|[0]5090739-5090911[1]|[2]5123004-5123121[2]|[0]5126333-5126446[2]|[0]5126684-5126791[2] atggaacaaccgtggccgcctccgggaccctggagcctccctcgggccgagggtgaggctgaggaagagagtgacttcgacgtgttccccagttctccccgctgcccgcagctgccaggcggcggcgcccagatgtatagccatggaattgaattggcttgccaaaagcagaaagagtttgtgaagagctctgtggcgtgcaaatggaatcttgctgaagctcaacagaaacttggtagcttagcactgcataattctgagtccttggatcaggagcatgccaaagcacaaacagcagtatcagaactgaggcaacgggaagaagagtggcgacagaaagaagaagctctagtacaaagagagaagatgtgtctgtggagcacggatgccattagcaaggatgtttttaataagATTTTACTTTCCTCGTTGGTATTGCAGTGGCAGCAACAGAGCCTATCGGCATGGAATATCTCGAGGTGCTGAAGCTCCTCTTCTTGATGACTTTGTCATGTCTTACCTCTTTGCTCAGTGGCGGCATGATTTTGTGCACGGATGGATAAAAGTACCTGTGACTCATGAAACACAGGAAGAATGTCTTGGGATGGCAGTGTTAGATATGATGAGAATAGCCAAAGAAAACGATCAAACCCCACTGGCCATCTATAACTCTATCAGCTACAAGACATTCTTACCAAAATGTATTCGAGCAAAGATCCAAGACTATCATATTTTGACAAGGAAGCGAATAAGGTACAGATTTCGCAGATTTATTCAGCAATTCAGCCAATGCAAAGCCACTGCCAGAAACTTGAAACTTAAGTATCTTATAAATCTGGAAACTCTGCAGTCTGCCTTCTACACAGAGAAATTTGAAGTAAAAGAACCTGGAAGTGGTCCTTCAGGTGAGGAGATTTTTGCAACCATTATAATAACTGGAAACGGTGGAATTCAGTGGTCAAGAGGGAAACATAAAGAAAGTGAGACACTGACAGAACAGGATTTACAGTTATATTGCGATTTTCCTAATATTATTGATGTCAGTATTAAGCAAGCAAACCAAGAGGGTTCAAATGAAAGCCGAGTTGTAACTATCCATAAGCAAGATGGTAAAAATCTGGAAATTGAACTTAGCTCATTAAGGGAAGCTTTGTCTTTCGTGTCATTAATTGATGGATATTATAGATTAACTGCAGATGCACATCATTACCTCTGTAAAGAAGTAGCACCTCCAGCCGTGCTTGAAAATATACAAAGCAACTGTCATGGCCCAATTTCGATGGATTTTGCCATTAGTAAACTGAAGAAAGCAGGTAATCAGACTGGACTGTATGTACTTCGATGCAGTCCTAAGGACTTTAATAAATATTTTTTGACTTTTGCTGTCGAGCGAGAAAATGTCATTGAATATAAACACTGTTTGATTACAAAAAATGAGAATGAAGAGTACAACCTCAGTGGGACAAAGAAGAACTTCAGCAGTCTTAAAGATCTTTTGAATTGTTACCAGATGGAAACTGTTCGCTCAGACAATATAATTTTCCAGTTTACTAAATGCTGTCCCCCAAAGCCAAAAGATAAATCAAACCTTCTAGTCTTCAGAACGAATGGTGTTTCTGATGTACCAACCTCACCAACATTACAGAGGCCTACTCATATGAACCAAATGGTGTTTCACAAAATCAGAAATGAAGATTTGATATTTAATGAAAGCCTTGGCCAAGGCACTTTTACAAAGATTTTTAAAGGCGTACGAAGAGAAGTAGGAGACTACGGTCAACTGCATGAAACAGAAGTTCTTTTAAAAGTTCTGGATAAAGCACACAGAAACTATTCAGAGTCTTTCTTTGAAGCAGCAAGTATGATGAGCAAGCTTTCTCACAAGCATTTGGTTTTAAATTATGGAGTATGTGTCTGTGGAGACGAGAATATTCTGGTTCAGGAGTTTGTAAAATTTGGATCACTAGATACATATCTGAAAAAGAATAAAAATTGTATAAATATATTATGGAAACTTGAAGTTGCTAAACAGTTGGCATGGGCCATGCATTTTCTAGAAGAAAACACCCTTATTCATGGGAATGTATGTGCCAAAAATATTCTGCTTATCAGAGAAGAAGACAGGAAGACAGGAAATCCTCCTTTCATCAAACTTAGTGATCCTGGCATTAGTATTACAGTTTTGCCAAAGGACATTCTTCAGGAGAGAATACCATGGGTACCACCTGAATGCATTGAAAATCCTAAAAATTTAAATTTGGCAACAGACAAATGGAGTTTTGGTACCACTTTGTGGGAAATCTGCAGTGGAGGAGATAAACCTCTAAGTGCTCTGGATTCTCAAAGAAAGCTACAATTTTATGAAGATAGGCATCAGCTTCCTGCACCAAAGTGGGCAGAATTAGCAAACCTTATAAATAATTGTATGGATTATGAACCAGATTTCAGGCCTTCTTTCAGAGCCATCATACGAGATCTTAACAGTTTGTTTACTCCAGATTATGAACTATTAACAGAAAATGACATGTTACCAAATATGAGGATAGGTGCCCTGGGGTTTTCTGGTGCCTTTGAAGACCGGGATCCTACACAGTTTGAAGAGAGACATTTGAAATTTCTACAGCAACTTGGCAAGGGTAATTTTGGGAGTGTGGAGATGTGCCGGTATGACCCTCTACAGGACAACACTGGGGAGGTGGTCGCTGTAAAAAAGCTTCAGCATAGTACTGAAGAGCACCTAAGAGACTTTGAAAGGGAAATTGAAATCCTGAAATCCCTACAGCATGACAACATTGTAAAGTACAAGGGAGTGTGCTACAGTGCTGGTCGGCGTAATCTAAAATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTTCAAAAACATAAAGAACGGATAGATCACATAAAACTTCTGCAGTACACATCTCAGATATGCAAGGGTATGGAGTATCTTGGTACAAAAAGGTATATCCACAGGGATCTGGCAACGAGAAATATATTGGTGGAGAACGAGAACAGAGTTAAAATTGGAGATTTTGGGTTAACCAAAGTCTTGCCACAAGACAAAGAATACTATAAAGTAAAAGAACCTGGTGAAAGTCCCATATTCTGGTATGCTCCAGAATCACTGACAGAGAGCAAGTTTTCTGTGGCCTCAGATGTTTGGAGCTTTGGAGTGGTTCTGTATGAACTTTTCACATACATTGAGAAGAGTAAAAGTCCACCAGCGGAATTTATGCGTATGATTGGCAATGACAAACAAGGACAGATGATCGTGTTCCATTTGATAGAACTTTTGAAGAATAATGGAAGATTACCAAGACCAGATGGATGCCCAGATGAGATCTATATGATCATGACAGAATGCTGGAACAATAATGTAAATCAACGCCCCTCCTTTAGGGATCTAGCTCTTCGAGTGGATCAAATAAGGGATAACATGGCTGGATGA MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNKILLSSLVLQWQQQSLSAWNISRC*SSSS**LCHVLPLCSVAA*FCARMDKSTCDS*NTGRMSWDGSVRYDENSQRKRSNPTGHL*LYQLQDILTKMYSSKDPRLSYFDKEANKVQISQIYSAIQPMQSHCQKLET*VSYKSGNSAVCLLHREI*SKRTWKWSFR*GDFCNHYNNWKRWNSVVKRET*RK*DTDRTGFTVILRFS*YY*CQY*ASKPRGFK*KPSCNYP*ARW*KSGN*T*LIKGSFVFRVIN*WIL*INCRCTSLPL*RSSTSSRA*KYTKQLSWPNFDGFCH**TEESR*SDWTVCTSMQS*GL**IFFDFCCRARKCH*I*TLFDYKK*E*RVQPQWDKEELQQS*RSFELLPDGNCSLRQYNFPVY*MLSPKAKR*IKPSSLQNEWCF*CTNLTNITEAYSYEPNGVSQNQK*RFDI**KPWPRHFYKDF*RRTKRSRRLRSTA*NRSSFKSSG*STQKLFRVFL*SSKYDEQAFSQAFGFKLWSMCLWRREYSGSGVCKIWITRYISEKE*KLYKYIMET*SC*TVGMGHAFSRRKHPYSWECMCQKYSAYQRRRQEDRKSSFHQT**SWH*YYSFAKGHSSGENTMGTT*MH*KS*KFKFGNRQMEFWYHFVGNLQWRR*TSKCSGFSKKATIL*R*ASASCTKVGRISKPYK*LYGL*TRFQAFFQSHHTRS*QFVYSRL*TINRK*HVTKYEDRCPGVFWCL*RPGSYTV*RETFEISTATWQG*FWECGDVPV*PSTGQHWGGGRCKKASA*Y*RAPKRL*KGN*NPEIPTA*QHCKVQGSVLQCWSA*SKINYGIFTIWKFTRLSSKT*RTDRSHKTSAVHISDMQGYGVSWYKKVYPQGSGNEKYIGGEREQS*NWRFWVNQSLATRQRIL*SKRTW*KSHILVCSRITDREQVFCGLRCLELWSGSV*TFHIH*EE*KSTSGIYAYDWQ*QTRTDDRVPFDRTFEE*WKITKTRWMPR*DLYDHDRMLEQ*CKSTPLL*GSSSSSGSNKG*HGWM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Tyrosine-protein kinase JAK2 TK Jak O60674 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Janus kinase 2 1 Yes ALL, AML, MPN, CML leukaemia_lymphoma oncogene, fusion translocation, missense, other 29536 AGAP1::GBX2-AS1 ENSG00000157985.20::ENSG00000233611.4 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235750488:+ chr2:236402687-237040437:+ chr2:236659132:+ GBX2-AS1 ENSG00000233611.4 lncRNA + + chr2:236167418-236294927:+ chr2:236259507:+ chr2:237076061-237203570:+ chr2:237168150:+ chr2:235754014,chr2:235754013 chr2:236238950,chr2:236238946 NA NA chr2:236662658,chr2:236662657 chr2:237147593,chr2:237147589 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 25 7 25 7 ONLY_REF_SPLICE YES_LDAS 0.3533 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29537 VPS35::MYLK3 ENSG00000069329.19::ENSG00000140795.13 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 677 FALSE NA FALSE NA VPS35 ENSG00000069329.19 protein_coding - - chr16:46656132-46689518:- chr16:46678943:- chr16:46690044-46723430:- chr16:46712855:- MYLK3 ENSG00000140795.13 protein_coding - - chr16:46702282-46790407:- chr16:46732668:- chr16:46736194-46824319:- chr16:46766580:- chr16:46677677,chr16:46677679 chr16:46733026,chr16:46733025 NA NA chr16:46711589,chr16:46711591 chr16:46766938,chr16:46766937 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Vps35-PARTIAL|15-720~|0^Imm5|400-470|0.11^CENP-O|475-641|1.3e-05^Imm5-PARTIAL|697-720~|0.00011 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_REARRANGEMENT:-:[13851] 25 19 25 19 ONLY_REF_SPLICE YES_LDAS 0.4857 GT 1.8295 AG 1.8062 ENST00000299138.12 1-720 ENST00000394809.9 1002-2460 chr16|-|[2]46678943-46679156[2]|[1]46680671-46680853[2]|[1]46681377-46681500[1]|[0]46682079-46682175[0]|[2]46683508-46683606[0]|[2]46689131-46689133[0]<==>chr16|-|[2]46707704-46707763[0]|[2]46709539-46709671[2]|[1]46710637-46710789[2]|[1]46712648-46712776[2]|[1]46721123-46721193[0]|[2]46727236-46727377[2]|[1]46729024-46729133[0]|[2]46729594-46729687[2]|[1]46730593-46730698[1]|[0]46732208-46732668[2] atgcctacaacacagcagtcccctcaggatgagcaggaaaagctcttggatgaagccatacaggctgtgaaggtccagtcattccaaatgaagagatgcctggacaaaaacaagcttatggatgctctaaaacatgcttctaatatgcttggtgaactccggacttctatgttatcaccaaagagttactatgaactttatatggccatttctgatgaactgcactacttggaggtctacctgacagatgagtttgctaaaggaaggaaagtggcagatctctacgaacttgtacagtatgctggaaacattatcccaaggctttaccttttgatcacagttggagttgtatatgtcaagtcatttcctcagtccaggaaggatattttgaaagatttggtagaaatgtgccgtggtgtgcaacatcccttgaggggtctgtttcttcgaaattaccttcttcagtgtaccagaaatatcttacctgatgaaggagagccaacagatgaagaaacaactggtgacatcagtgattccatggattttgtactgctcaactttgcagaaatgaacaagctctgggtgcgaatgcagcatcagggacatagccgagatagagaaaaaagagaacgagaaagacaagaactgagaattttagtgggaacaaatttggtgcgcctcagtcagttggaaggtgtaaatgtggaacgttacaaacagGATCTCCATCCACATACAAGAGATGGATACTCCTGGGGAGATGCTGATGACAGGCAGGGGCAGCCTTGGACCCACCCTCACCACAGAGGCTCCAGCAGCTGCCCAGCCAGGCAAGCAGGGCCCACCTGGGACCGGGCGCTGCCTCCAAGCCCCTGGGACTGAGCCCGGAGAACAGACCCCTGAAGGAGCCAGAGAGCTCTCCCCGCTGCAGGAGAGCAGCAGCCCCGGGGGAGTGAAGGCAGAGGAGGAGCAAAGGGCTGGGGCCGAGCCTGGCACGAGACCAAGCTTGGCCAGGAGTGACGACAATGACCACGAGGTTGGGGCCCTGGGCCTGCAGCAGGGCAAAAGCCCAGGGGCGGGAAACCCTGAGCCTGAGCAGGACTGTGCAGCCAGGGCTCCGGTGAGAGCTGAAGCAGTAAGGAGGATGCCCCCAGGCGCCGAGGCTGGCAGCGTGGTTCTGGATGACAGTCCGGCCCCACCAGCTCCTTTTGAACACCGGGTAGTGAGCGTCAAGGAGACCTCCATCTCTGCGGGTTACGAGGTGTGCCAGCACGAAGTCTTGGGAGGGGGTCGGTTTGGCCAGGTCCACAGGTGCACAGAGAAGTCCACAGGCCTCCCACTGGCTGCCAAGATCATCAAAGTGAAGAGCGCCAAGGACCGGGAGGACGTGAAGAACGAGATCAACATCATGAACCAGCTCAGCCACGTGAACCTGATCCAGCTCTATGACGCCTTCGAGAGCAAGCACAGCTGCACCCTTGTCATGGAGTACGTGGACGGGGGTGAGCTCTTCGACCGGATCACAGATGAGAAGTACCACCTGACTGAGCTGGATGTGGTCCTGTTCACCAGGCAGATCTGTGAGGGTGTGCATTACCTGCACCAGCACTACATCCTGCACCTGGACCTCAAGCCGGAGAACATATTGTGCGTCAATCAGACAGGACATCAAATTAAGATCATTGACTTTGGGCTGGCCAGAAGGTACAAGCCTCGAGAGAAGCTGAAGGTGAACTTCGGCACTCCTGAGTTCCTGGCCCCAGAAGTCGTCAATTATGAGTTTGTCTCATTCCCCACAGACATGTGGAGTGTGGGAGTCATCACCTACATGCTACTCAGTGGCTTGTCCCCATTTCTAGGGGAAACAGATGCAGAGACCATGAATTTCATTGTAAACTGTAGCTGGGATTTTGATGCTGACACCTTTGAAGGGCTCTCGGAGGAGGCCAAGGACTTTGTTTCCCGGTTGCTGGTCAAAGAGAAGAGCTGCAGAATGAGTGCCACACAGTGCCTGAAACACGAGTGGCTGAATAATTTGCCTGCCAAAGCTTCAAGATCCAAAACTCGTCTCAAATCCCAACTACTGCTGCAGAAATACATAGCTCAAAGAAAATGGAAGAAACATTTCTATGTGGTGACTGCTGCCAACAGGTTAAGGAAATTTCCAACTTCTCCCTAA MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQDLHPHTRDGYSWGDADDRQGQPWTHPHHRGSSSCPARQAGPTWDRALPPSPWD*ARRTDP*RSQRALPAAGEQQPRGSEGRGGAKGWGRAWHETKLGQE*RQ*PRGWGPGPAAGQKPRGGKP*A*AGLCSQGSGES*SSKEDAPRRRGWQRGSG*QSGPTSSF*TPGSERQGDLHLCGLRGVPARSLGRGSVWPGPQVHREVHRPPTGCQDHQSEERQGPGGREERDQHHEPAQPREPDPAL*RLREQAQLHPCHGVRGRG*ALRPDHR*EVPPD*AGCGPVHQADL*GCALPAPALHPAPGPQAGEHIVRQSDRTSN*DH*LWAGQKVQASREAEGELRHS*VPGPRSRQL*VCLIPHRHVECGSHHLHATQWLVPISRGNRCRDHEFHCKL*LGF*C*HL*RALGGGQGLCFPVAGQREELQNECHTVPETRVAE*FACQSFKIQNSSQIPTTAAEIHSSKKMEETFLCGDCCQQVKEISNFSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Myosin light chain kinase 3 CAMK MLCK Q32MK0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29539 ENSG00000248802::ARHGEF38 ENSG00000248802.1::ENSG00000236699.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 681 FALSE NA FALSE NA ENSG00000248802 ENSG00000248802.1 lncRNA - - chr4:128582999-128601407:- chr4:128601313:- chr4:129504154-129522562:- chr4:129522468:- ARHGEF38 ENSG00000236699.9 protein_coding + + chr4:105552620-105708093:+ chr4:105636403:+ chr4:106473777-106629250:+ chr4:106557560:+ chr4:128601059,chr4:128601061 chr4:105631633,chr4:105631626 NA NA chr4:129522214,chr4:129522216 chr4:106552790,chr4:106552783 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 20 2 20 1.43 ONLY_REF_SPLICE NO_LDAS 0.2366 GT 1.9656 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29542 ACAP2::XXYLT1 ENSG00000114331.16::ENSG00000173950.16 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 679 FALSE NA FALSE NA ACAP2 ENSG00000114331.16 protein_coding - - chr3:195274745-195443044:- chr3:195381009:- chr3:194995474-195163773:- chr3:195101738:- XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195070111:- chr3:194789013-194991888:- chr3:194790840:- chr3:195366004 chr3:195136301 NA NA chr3:195086733 chr3:194857030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BAR_3|5-238|8.3e-93^PH_11|67-134|0.69^ArfGap|126-142|3.9^PH-PARTIAL|268-285~|2.7e-19^PH_11-PARTIAL|270-285~|5.4e-05^PH_8-PARTIAL|271-285~|0.00017 none ["XXYLT1:Oncogene"];["GUO2018CR_TCGA","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS[3569] 17 3 17 3 ONLY_REF_SPLICE YES_LDAS 0.2208 GT 1.5058 AG 1.9656 ENST00000326793.11 1-285 ENST00000310380.11 786-1182 chr3|-|[2]195381009-195381062[0]|[2]195381903-195382022[0]|[2]195392090-195392147[2]|[1]195442795-195442847[0]<==>chr3|-|[2]195069715-195070111[2] atgaagatgactgtggatttcgaggagtgtctgaaggactcgccccgcttcagggcagctttggaagaagtagaaggtgatgtggcagaattggaactaaaacttgataagcttgtgaaactttgtattgcaatgattgatactggaaaagccttttgtgttgcaaataaacagttcatgaatgggattcgagacctggctcagtattctagtaatgatgctgtcgttgagacaagtttgaccaagttttctgacagtcttcaagaaatgataaattttcacacaGCACACATTCTGGCAGTTCCGCCATGAGAACCCCCAGACCCGGGTTGGGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGACAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAGCTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCATGGCTACAGTGACGTCTTCGAGGCCTATTTCAGGTGTGAGGGCCACGTCAAGATCTACCACGGGAACTGCAACACTCCCATCCCGGAGGACTAG MKMTVDFEECLKDSPRFRAALEEVEGDVAELELKLDKLVKLCIAMIDTGKAFCVANKQFMNGIRDLAQYSSNDAVVETSLTKFSDSLQEMINFHTAHILAVPP*EPPDPGWGPAPRGAAGLQQRGDVAEPGGHAPVPALQPPAGAGAGAAAGRQVPLPRPPRGPGLLHHDRHGAPQALPCAGLYLEPAAVHLVEGPWLQ*RLRGLFQV*GPRQDLPRELQHSHPGGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Breast,Lung,Bladder exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29543 CDH13::LYPD9P ENSG00000140945.17::ENSG00000229703.6 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDH13 ENSG00000140945.17 protein_coding + + chr16:82626965-83800640:+ chr16:83032218:+ chr16:82660570-83834245:+ chr16:83065823:+ LYPD9P ENSG00000229703.6 transcribed_unitary_pseudogene + + chr1:248691760-248716755:+ chr1:248697031:+ chr1:248855061-248880056:+ chr1:248860332:+ chr16:83102820,chr16:83102816 chr1:248693978,chr1:248693971 NA NA chr16:83136425,chr16:83136421 chr1:248857279,chr1:248857272 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDH13:Oncogene"] 17 8 17 8 ONLY_REF_SPLICE YES_LDAS 0.276 GT 1.9086 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-8058 chr16:82688931-82689019:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29545 SMAD3::IQCH ENSG00000166949.17::ENSG00000103599.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 675 TRUE 1200 TRUE 461 SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67125984:+ chr15:67356101-67487511:+ chr15:67418322:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:67129985,chr15:67129983 chr15:67384104,chr15:67384099 NA NA chr15:67422323,chr15:67422321 chr15:67676442,chr15:67676437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SMAD3:Oncogene","SMAD3:ArcherDX_panel","SMAD3:FoundationOne_panel"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.06Mb];NEIGHBORS[59605] 17 22 17 19.98 ONLY_REF_SPLICE YES_LDAS 0.4082 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS exact 67181453|67184864|67181453 FALSE|FALSE|FALSE 67465127|67465127|67475696 FALSE|FALSE|FALSE TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 29546 SMAD3::IQCH ENSG00000166949.17::ENSG00000103599.20 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 676 TRUE 1200 TRUE 461 SMAD3 ENSG00000166949.17 protein_coding + + chr15:67063763-67195173:+ chr15:67066360:+ chr15:67356101-67487511:+ chr15:67358698:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:67129985,chr15:67129983 chr15:67384104,chr15:67384099 NA NA chr15:67422323,chr15:67422321 chr15:67676442,chr15:67676437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MH1|31-131|1.1e-45 none ["SMAD3:Oncogene","SMAD3:ArcherDX_panel","SMAD3:FoundationOne_panel"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.06Mb];NEIGHBORS[59605] 13 7 13 2.02 ONLY_REF_SPLICE YES_LDAS 0.1658 GT 1.6402 AG 1.9329 ENST00000560424.2 1-206 ENST00000335894.9 1373-3084 chr15|+|[0]67066155-67066360[1]<==>chr15|+|[1]67384936-67385019[0]|[1]67388831-67389006[2]|[0]67395291-67395563[2]|[0]67400114-67400305[2]|[0]67416931-67417051[0]|[1]67421291-67421577[2]|[0]67465127-67465297[2]|[0]67475696-67475818[2]|[0]67490003-67490064[1]|[2]67494258-67494366[2]|[0]67500633-67500746[2] atgtcgtccatcctgcctttcactcccccgatcgtgaagcgcctgctgggctggaagaagggcgagcagaacgggcaggaggagaaatggtgcgagaaggcggtcaagagcctggtcaagaaactcaagaagacggggcagctggacgagctggagaaggccatcaccacgcagaacgtcaacaccaagtgcatcaccatccccagGGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAGATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTACATGCAGCCGTCAAATCTGGGAACCTTGAGGACAGAAGTGACCTGCAGGACAGGTTCAAAATTATCACACCTGAAGCTGTAAACATCTTCCCTAAGCATCATATGTGCCTGGCCACTCACCTGATGTACAGTCCCAAGGCAATCAAAAGAATAAAAAATCTCATCCGAGGAACAGAGGCCTACATCGTCAGCGGGCTCCTCCACAGAGATGATTTAGCTGTGGCCGATATGTTAGACATACCCATCCTGGGCTCTGAGCCTGAACTAGCTCATCTTTATAGTACCAAATCTGGAGGCAAACGTGTCTTTGACAGTGCCAATGTGGCAGTTCCTCCTGGAATATATGATATTTATAGTCAGCAACAGATGATAGAGCAGCTGAGTCAGCTGATAACTGATCACCTGCAAATACAGCGTTGGCTCTTTAAAATGGACTCTGAGTTCCGAGGAAATGGGACTGCATTTTGTGATATTCCTTCCTACCTAAAGTGCTACAAATGGGTGCTAAAGGAGAGTAGCAGATATGGCCTTGAAGACTGGAGAAAGAAATGGGCACAAGAGCCAGCTTTGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAGCACGCACAGCCAGTCAATGAGAAACGGTTCCCGACGTGGAGGAAATTCCTCCAAACATTTCTCAGTCAAGGGGGTGTGATCGAAGCATTCCCACCTGCAGACAATGTCACCAACCTCACAGTGGACATGCTGATAGAGCCCAACGGGAAAATCAGCGTGCTGTCGACAGGGGACCAGCTTCATGCTGAAAGCCCCTTCATCTCCTCTGGTACCACCGTGCCTCAGACCTCAGTGGATCCCCAAGTTCTCACTTATTTGTGCCTCCAAATTGGAAAAGCCTGCAGAATGAGAGATGTGGTTGGTTACTTTTCGATAGATCTGGTGACTTTTATAGATCCAAGCACCTTGGAACAACAGGTGTGGGCAACCGGCCTTAACCTCGCATATAGTGACCAGCTGGCCCTGACTCAACTCACCTTATACCTGACAAACGGCCATCTGGATTGCAGTTTGAGCACCCTGGAAGTGCCCCGCTTTGTTCCAAAGGAAAGGAAGAAAACCAAATGCATGAGTGCGCTGTCAATGCCGATGCTGGCAACCAGTCGCTATGCAGTGATGACCACCCAGCTAAGACACAGCAATCTCTCACTGGTTTTCCACTATGTTTTTCTCCAGATCTGTAGGGCCCATGGCATTGGCTATGATGTTGAGGAAAGGCAAGGAACTGTTTTTATATTATATGAGCACCTGAAGAGACACAAGTTGGGAATGTTAACAATCGGCGAGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCCATCTCTTCATCATCCATCAAGAAATATCAGCACCTAATATGCAAGGCGAGACCAATTTTAAGACCACCATTGCTGATATTGAAACTATTCTAAGAGTAACAAAGGAAAACAAAATGAGATTTGAAGAGGAGCAACAGTCCAAAGATGATAAAAACCTCTCTAAACCCAAGAAATGA MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRVFPACERTYCRFQHTAEHAAGEAV*HLRCQCECHLHLLPSYE*RVSAVLQKNPKSTCSRQIWEP*GQK*PAGQVQNYHT*SCKHLP*ASYVPGHSPDVQSQGNQKNKKSHPRNRGLHRQRAPPQR*FSCGRYVRHTHPGL*A*TSSSL*YQIWRQTCL*QCQCGSSSWNI*YL*SATDDRAAESADN*SPANTALAL*NGL*VPRKWDCIL*YSFLPKVLQMGAKGE*QIWP*RLEKEMGTRASFGEDL*GAGGHFSTARTASQ*ETVPDVEEIPPNISQSRGCDRSIPTCRQCHQPHSGHADRAQRENQRAVDRGPASC*KPLHLLWYHRASDLSGSPSSHLFVPPNWKSLQNERCGWLLFDRSGDFYRSKHLGTTGVGNRP*PRI**PAGPDSTHLIPDKRPSGLQFEHPGSAPLCSKGKEENQMHECAVNADAGNQSLCSDDHPAKTQQSLTGFPLCFSPDL*GPWHWL*C*GKARNCFYII*APEETQVGNVNNRRGSPGGPHDLCSPSLHHPSRNIST*YARRDQF*DHHC*Y*NYSKSNKGKQNEI*RGATVQR**KPL*TQEM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Esophagus OESOPHAGUS exact 67181453|67184864|67181453 FALSE|FALSE|FALSE 67465127|67465127|67475696 FALSE|FALSE|FALSE TRUE SMAD family member 3 1 Yes colorectal carcinoma, oral squamous cell carcinoma epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 29547 BMP7::PRANCR ENSG00000101144.13::ENSG00000257815.9 KYSE450 SRR8615511 SRR8652096 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BMP7 ENSG00000101144.13 protein_coding - - chr20:57168753-57266641:- chr20:57265705:- chr20:55743809-55841697:- chr20:55840761:- PRANCR ENSG00000257815.9 lncRNA - - chr12:69901918-70243405:- chr12:69904419:- chr12:70295698-70637185:- chr12:70298199:- chr20:57257670,chr20:57257672 chr12:70046333,chr12:70046332 NA NA chr20:55832726,chr20:55832728 chr12:70440113,chr12:70440112 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 13 3 13 3 ONLY_REF_SPLICE YES_LDAS 0.1766 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29559 PSMD14::MFSD11 ENSG00000115233.12::ENSG00000092931.12 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 684 FALSE NA FALSE NA PSMD14 ENSG00000115233.12 protein_coding + + chr2:161308425-161411717:+ chr2:161316569:+ chr2:162164936-162268228:+ chr2:162173080:+ MFSD11 ENSG00000092931.12 protein_coding + + chr17:76735865-76781449:+ chr17:76767386:+ chr17:74731947-74777531:+ chr17:74763468:+ chr2:161317441,chr2:161317442 chr17:76763630,chr17:76763628 NA NA chr2:162173952,chr2:162173953 chr17:74759712,chr17:74759710 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr17] 77 72 77 72 ONLY_REF_SPLICE YES_LDAS 1.4958 GT 1.9899 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29561 EEF1AKMT2::ABRAXAS2 ENSG00000203791.15::ENSG00000165660.8 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 685 FALSE NA FALSE NA EEF1AKMT2 ENSG00000203791.15 protein_coding - - chr10:124748149-124791887:- chr10:124774675:- chr10:126436718-126480456:- chr10:126463244:- ABRAXAS2 ENSG00000165660.8 protein_coding + + chr10:124801819-124836667:+ chr10:124828756:+ chr10:126490388-126525236:+ chr10:126517325:+ chr10:124774359,chr10:124774366 chr10:124827072,chr10:124827065 NA NA chr10:126462928,chr10:126462935 chr10:126515641,chr10:126515634 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TPMT|60-190|1.6e-05^Methyltransf_20|67-195|1.1e-05^MTS|68-139|7.9e-08^Spermine_synth|68-206|1.4e-06^PrmA|70-134|4.5e-09^CMAS|73-201|1.2e-06^Methyltransf_23|77-161|7.2e-12^PCMT|77-136|2.1e-05^TehB|80-143|1.8e-06^Methyltransf_31|81-210|1.5e-25^Methyltransf_4|82-178|2.5e-07^Methyltransf_25|83-185|4.1e-14^Methyltransf_11|84-189|4.6e-12^Methyltransf_12|84-186|1e-09 none ["CCLE_StarF2019"] 31 34 31 34 ONLY_REF_SPLICE YES_LDAS 0.6525 GT 1.6402 AG 1.8062 ENST00000368836.7 1-399 ENST00000298492.6 459-1248 chr10|-|[2]124774675-124774782[0]|[2]124789043-124789157[2]|[1]124790273-124790338[2]|[1]124791724-124791833[0]<==>chr10|+|[2]124828756-124828875[1]|[2]124829393-124829477[2]|[0]124831349-124831463[0]|[1]124834502-124834971[2] atgagctcgggcgctgacggcggcggtggcgctgcggtggcggcgcggtcggacaagggcagtcccggggaggacggtttcgtcccgtcggcgctggggacccgcgagcattgggatgctgtctatgagagagaactgcaaactttccgagaatatggagatacaggtgaaatctggtttggagaagagagtatgaatcgactaataaggtggatgcagaaacacaagattccactggatgcttcagtgcttgatattggaactggaaatggtgttttcctggttgaacttgcaaaatttggtttctctaatattactggaattgattactctccttctgcaattcagctttctggaagtattatagaaaaagaaggtttatctaacattaagttaaagGTATAATCAGAGGATATCACTCGCTATTCCCAATCTAGGAAATACTAGCCAGCAAGAGTACAAAGTGTCTTCAGTGCCAAATACTTCTCAGAGTTATGCCAAAGTGATTAAAGAACATGGTACTGACTTTTTTGACAAGGATGGAGTGATGAAAGACATCAGGGCGATTTATCAGGTTTATAATGCACTTCAGGAGAAAGTTCAGGCAGTGTGTGCAGATGTTGAAAAGAGTGAGCGAGTTGTTGAATCTTGTCAGGCAGAAGTGAACAAATTAAGAAGACAAATCACTCAGAGGAAAAATGAAAAGGAACAAGAAAGAAGATTGCAGCAGGCAGTGTTAAGCAGACAGATGCCGTCTGAAAGCTTGGACCCAGCGTTCAGTCCTCGGATGCCGTCCTCTGGGTTTGCAGCTGAAGGCAGAAGTACACTTGGAGATGCAGAGGCCTCGGATCCTCCTCCCCCTTACTCTGATTTTCACCCAAACAATCAAGAAAGTACTTTGAGCCACTCTCGCATGGAAAGGAGTGTCTTTATGCCTCGACCTCAAGCTGTGGGCTCTTCCAATTATGCTTCCACCAGTGCCGGACTGAAGTATCCTGGAAGTGGGGCTGACCTTCCTCCTCCCCAAAGAGCAGCTGGAGACAGTGGTGAGGATTCAGACGACAGTGATTATGAAAATTTGATTGACCCTACAGAGCCTTCTAATAGTGAATACTCACATTCAAAGGATTCTCGACCCATGGCACATCCCGACGAGGACCCCAGGAACACTCAGACCTCCCAGATTTAA MSSGADGGGGAAVAARSDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWMQKHKIPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKV*SEDITRYSQSRKY*PARVQSVFSAKYFSELCQSD*RTWY*LF*QGWSDERHQGDLSGL*CTSGESSGSVCRC*KE*ASC*ILSGRSEQIKKTNHSEEK*KGTRKKIAAGSVKQTDAV*KLGPSVQSSDAVLWVCS*RQKYTWRCRGLGSSSPLL*FSPKQSRKYFEPLSHGKECLYASTSSCGLFQLCFHQCRTEVSWKWG*PSSSPKSSWRQW*GFRRQ*L*KFD*PYRAF***ILTFKGFSTHGTSRRGPQEHSDLPDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29562 CSNK1G2::TRAF7 ENSG00000133275.16::ENSG00000131653.14 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 686 FALSE NA FALSE NA CSNK1G2 ENSG00000133275.16 protein_coding + + chr19:1941172-1981338:+ chr19:1941418:+ chr19:1941171-1981337:+ chr19:1941417:+ TRAF7 ENSG00000131653.14 protein_coding + + chr16:2155698-2178129:+ chr16:2175111:+ chr16:2205699-2228130:+ chr16:2225112:+ chr19:1953628,chr19:1953622 chr16:2174250,chr16:2174235 NA NA chr19:1953627,chr19:1953621 chr16:2224251,chr16:2224236 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TRAF7:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr16] 23 0 23 0 ONLY_REF_SPLICE YES_LDAS 0.2309 GT 1.5656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Casein kinase I isoform gamma-2 CK1 CK1 P78368 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tumour necrosis factor receptor-associated factor 7 1 Yes meningioma other TSG missense 29564 BCL7A::CFAP251 ENSG00000110987.9::ENSG00000158023.10 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 687 FALSE NA FALSE NA BCL7A ENSG00000110987.9 protein_coding + + chr12:122019422-122062044:+ chr12:122035427:+ chr12:122457328-122499950:+ chr12:122473333:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121948984:+ chr12:122356498-122441833:+ chr12:122386890:+ chr12:122037704,chr12:122037702 chr12:121946200,chr12:121946195 NA NA chr12:122475610,chr12:122475608 chr12:122384106,chr12:122384101 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BCL_N|4-51|3.8e-33^BCL_N|156-169|0.12 none ["BCL7A:Oncogene"] 14 7 14 7 ONLY_REF_SPLICE YES_LDAS 0.2109 GT 1.9329 AG 1.7465 ENST00000261822.5 1-271 ENST00000288912.9 1192-3450 chr12|+|[0]122022092-122022183[1]|[2]122030700-122030781[2]|[0]122035331-122035427[0]<==>chr12|+|[0]121948984-121949061[2]|[0]121951480-121951530[2]|[0]121954120-121954334[1]|[2]121957074-121957268[1]|[2]121958272-121958522[0]|[1]121958943-121959094[2]|[0]121960585-121960758[2]|[0]121961978-121962162[1]|[2]121966955-121967069[2]|[0]121968006-121968169[1]|[2]121975244-121975334[2]|[0]121975542-121975685[2]|[0]121999716-121999944[0]|[1]122001497-122001598[0]|[1]122003652-122003764[2] atgtcgggcaggtcggttcgagccgagacgaggagccgggccaaagatgatatcaagagggtcatggcggcgatcgagaaagtgcgcaaatgggagaagaaatgggtgaccgttggtgacacatccctacgaatctacaaatgggtccctgtgacggagcccaaggttgatgacaaaaacaagaataagaaaaaaggcaaggacgagaagtgtggctcagaggtgaccactccggagaacagttcctccccagggatgatggacatgcatgAACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTAAAACACGGGCAATATATTATGCATGGTATGAAGAGAGGGATACACTGGCTCACAGTGCCCCACTTTTAACTGAAAAAACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAATTTAACACAAATACTCTCAGCCACAATGGAAGGGAAGCTGGTTGTCTGGGACATACACCGCCCACCCTCATCTGCCTCCACCTTTTTGGGCTTTCCCTATATCAAGCCTTGTAAATTGGTTCATTTGCAGAAAGAGGGTATCACGGTACTTACCACAATTGATAGCTACATTGTCACAGGTGACATTAAGGGGAACATTAAGTTCTATGATCACACCCTGTCTATTGTTAACTGGTACAGTCACTTGAAACTGGGCGCCATAAGAACTCTGTCCTTTTCAAAGACCCCAGCAACTCCTCCTACTGAAAAATCAAACTATCCTCCTGACTGCACTTTAAAAGGTGACCTTTTTGTCTTAAGGAATTTTATCATTGGAACATCTGATGCCGCGGTGTACCACTTAACAACAGATGGGACCAAACTTGAGAAGTTATTTGTAGAGCCCAAGGATGCCATTTGTGCCATCTCCTGCCACCCATATCAACCCCTCATTGCCATCGGGAGCATCTGTGGGATGATCAAAGTGTGGAATTATGAAAACAAACAATATCTTTTCAGCAGGGTTTTTGAGAAGGGGCTTGGAGTCCAGAGTCTGACCTACAACCCCGAAGGAGCCCTTCTTGGAGCTGGCTTTACAGAGGGGACAGTTTACATTCTTGATGCAATGTCTTTAGAAAATGAAAGCCCAGAGCCTTTCAAATATTCCAGAACCAGTGTGACTCATATAAGCTTTTCCCATGACTCCCAGTATATGGCAACTGCTGATAGAAGTTTTACTGTGGCTGTTTACATGCTGGTGGTCAGAAATGGACAGAGGGTCTGGGAGTACTTAGCAAGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCCTGTTTGGGGTTTACCTGGACAGCAATGAGCCTAGACTGCTGAGCCTTGGGACAGACAGGCTCTTGATAGAGTATGATCTTCTCAGGAGCTACAAAGACCACCTGGAAGTCCTGGACATTCACCACACCGACCAGGGCTGCTATCCCACCTGCATGGTCTGGTACCCACCACTCACCAGGGAACTCTTCCTGCTTATTTGCAACAGTGGCTACAAAGTGAAGCTTTTTAATGCTACTACCAAAATGTGCAGAAAGACGCTTCTGGGGCCAGCTTATGGTTCCCCTATTGAGCAGACACAAGTCCTCCCAGTGAGAAGCATGGCGGAGCTACAGAAACGCTACTTGGTGTTTATTAACAGAGACAAGGTGGGACTTCAGATCTTACCAGTTGACGGCAATCCACATAAGACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGATGGCTGCTACGCCTTCACTGCGGGAGGGCACGATCGCTCGGTGGTGCAGTGGAAAATCACCTTAAGTGTCCTGGAGGCAGCGGTTTCTCTTGGGGGTGAAGACTTGACCCCATTCTATGGTCTGCTGTCTGGTGGCCGGGAAGGAAAATTCTACAGGGAGCTAGAAGACTACTTCTACTATTCTCAGCTCCGCAGTCAAGGCATCGACACAATGGAGACCAGAAAGGTGTCAGAACACATTTGCCTGTCAGAGCTTCCTTTTGTCATGAGAGCAATTGGCTTTTACCCATCTGAAGAGAAGATTGATGATATATTTAACGAAATCAAATTTGGTGAATATGTGGACACTGGAAAGCTAATCGACAAGATCAACTTACCAGATTTCCTAAAAGTGTACCTTAACCACAAGCCACCTTTTGGTAACACCATGAGTGGCATCCACAAGAGCTTTGAGGTGCTCGGTTATACCAACTCCAAAGGGAAAAAGGCCATTCGAAGAGAGGACTTCCTGAGACTGCTCGTTACTAAAGGTGAGCATATGACGGAGGAGGAGATGTTGGATTGCTTTGCTTCACTGTTTGGCCTGAATCCCGAGGGATGGAAATCCGAGCCTGCAACCTGCTCCGTCAAAGGTTCAGAAATTTGCCTTGAAGAAGAACTTCCAGACGAAATCACTGCAGAAATATTCGCGACTGAAATTCTTGGCTTAACCATTTCAGAAGATTCCGGCCAGGATGGTCAGTGA MSGRSVRAETRSRAKDDIKRVMAAIEKVRKWEKKWVTVGDTSLRIYKWVPVTEPKVDDKNKNKKKGKDEKCGSEVTTPENSSSPGMMDMHELRYF*PNK**RIGEQ**NTGNILCMV*REGYTGSQCPTFN*KNLQQACGKV*PVHLSLEFNTNTLSHNGREAGCLGHTPPTLICLHLFGLSLYQAL*IGSFAERGYHGTYHN**LHCHR*H*GEH*VL*SHPVYC*LVQSLETGRHKNSVLFKDPSNSSY*KIKLSS*LHFKR*PFCLKEFYHWNI*CRGVPLNNRWDQT*EVICRAQGCHLCHLLPPISTPHCHREHLWDDQSVEL*KQTISFQQGF*EGAWSPESDLQPRRSPSWSWLYRGDSLHS*CNVFRK*KPRAFQIFQNQCDSYKLFP*LPVYGNC**KFYCGCLHAGGQKWTEGLGVLSKTSLSSQKHSKSPVWGLPGQQ*A*TAEPWDRQALDRV*SSQELQRPPGSPGHSPHRPGLLSHLHGLVPTTHQGTLPAYLQQWLQSEAF*CYYQNVQKDASGASLWFPY*ADTSPPSEKHGGATETLLGVY*QRQGGTSDLTS*RQST*DICYCLPPERGGRHGRFL*WLLRLHCGRARSLGGAVENHLKCPGGSGFSWG*RLDPILWSAVWWPGRKILQGARRLLLLFSAPQSRHRHNGDQKGVRTHLPVRASFCHESNWLLPI*RED**YI*RNQIW*ICGHWKANRQDQLTRFPKSVP*PQATFW*HHEWHPQEL*GARLYQLQREKGHSKRGLPETARY*R*AYDGGGDVGLLCFTVWPESRGMEIRACNLLRQRFRNLP*RRTSRRNHCRNIRD*NSWLNHFRRFRPGWSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE B-cell CLL/lymphoma 7A 1 BNHL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29565 SMARCA4::LDLR ENSG00000127616.22::ENSG00000130164.15 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 691 FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10961174:+ chr19:11071608-11190102:+ chr19:11071850:+ LDLR ENSG00000130164.15 protein_coding + + chr19:11089418-11133820:+ chr19:11111514:+ chr19:11200094-11244496:+ chr19:11222190:+ chr19:10976217,chr19:10976208,chr19:10976209 chr19:11110890,chr19:11110878,chr19:11110881 NA NA chr19:11086893,chr19:11086884,chr19:11086885 chr19:11221566,chr19:11221554,chr19:11221557 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SMARCA4:Oncogene","SMARCA4:FoundationOne_panel","SMARCA4:ArcherDX_panel"];["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.02Mb];NEIGHBORS[23967] 13 14 13 14 ONLY_REF_SPLICE YES_LDAS 0.2711 GT 1.4295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-6886 chr19:11113474-11113534:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 29566 SPAG1::VPS13B ENSG00000104450.13::ENSG00000132549.20 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 690 FALSE NA FALSE NA SPAG1 ENSG00000104450.13 protein_coding + + chr8:100157906-100259278:+ chr8:100213428:+ chr8:101170134-101271506:+ chr8:101225656:+ VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99835197:+ chr8:100025494-100889808:+ chr8:100847425:+ chr8:100213812,chr8:100213811 chr8:99833934,chr8:99833930 NA NA chr8:101226040,chr8:101226039 chr8:100846162,chr8:100846158 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TPR_7|51-70|1.1^TPR_1|214-237|3.1e-05^TPR_2|215-240|0.0012^TPR_8|215-237|0.00042^TPR_16|215-275|0.00036^TPR_11|216-232|0.073^TPR_14|219-249|0.045^TPR_6|220-236|0.24^TPR_10|220-236|0.35^ANAPC3|220-261|0.086^MIT|221-251|0.00032^TPR_19|222-261|0.1^TPR_12|222-237|0.029^Fis1_TPR_C|222-232|8.8^TPR_7|222-236|0.01^TPR_10|241-271|0.00028^TPR_1|243-275|3.4e-08^TPR_17|243-262|1.2^TPR_12|243-304|0.00013^TPR_2|244-275|8.6e-07^TPR_8|244-274|0.00079^TPR_14|245-284|0.0017^TPR_6|248-273|0.49^Fis1_TPR_C|249-278|0.0047^TPR_11|250-287|0.12^TPR_9|253-312|4.4e-07^MbeD_MobD|253-300|0.00079^TPR_19|256-313|2e-07^ANAPC3|257-304|0.0083^TPR_20|262-319|0.00069^TPR_17|265-295|6.8e-07^Alkyl_sulf_dimr|274-325|0.00045^DUF3597|275-328|2.1^TPR_1|276-309|2.8e-07^TPR_2|277-309|8.8e-05^TPR_8|277-309|0.0004^TPR_14|277-316|0.016^TPR_12|278-306|0.2^TPR_6|278-308|0.0062^TPR_16|281-329|0.19^TPR_10|283-304|0.031^TPR_11|286-310|0.011^TPR_19|289-331|0.00091^Fis1_TPR_C|293-315|0.41^MIT|294-316|9.8^TPR_8|318-335|4^DUF3597|381-426|0.51^TPR_2|447-474|0.00017^TPR_1|448-474|0.034^TPR_16|451-473|0.0031^TPR_11|452-474|0.00052^TPR_10|453-464|7.2^TPR_14|454-481|0.018^TPR_6|455-476|0.32^TPR_8|456-476|2^MIT|458-499|0.0077^TPR_7|458-475|0.22^SHNi-TPR|459-476|3.9^TPR_12|462-475|0.85^TPR_19|464-504|0.00069^TPR_10|464-477|1.8^ANAPC3|466-540|0.0057^TPR_17|487-502|0.61^TPR_12|487-517|0.0038^TPR_1|489-518|3e-07^TPR_2|489-518|0.00029^TPR_8|490-516|0.77^TPR_14|493-528|0.062^TPR_6|493-520|0.48^TPR_9|495-550|0.00046^TPR_17|510-540|0.00059^TPR_16|511-540|3.7^TPR_1|524-551|6e-06^TPR_2|524-551|0.0006^TPR_14|524-542|1.1^TPR_6|524-548|0.38^MIT|524-546|0.26^TPR_8|525-551|0.0014^TPR_19|535-551|8.3^TPR_11|535-551|0.3^SHNi-TPR|535-550|3.7^TPR_20|618-653|8.8^TPR_1|624-653|0.0054^TPR_2|624-654|0.0002^TPR_14|630-654|4.3^TPR_11|630-670|0.00033^MIT|635-651|0.013^TPR_12|636-654|1^TPR_8|637-655|4.4^TPR_9|637-688|0.00046^TPR_19|637-688|7.3e-06^ANAPC3|637-711|0.0012^Fis1_TPR_C|637-653|1.8^SHNi-TPR|637-653|0.028^TPR_17|646-678|0.00063^TPR_12|657-701|3.5e-05^TPR_1|659-687|9.1e-10^TPR_2|659-690|5.8e-08^TPR_8|659-687|3.1e-05^TPR_10|660-686|0.062^TPR_14|661-698|0.017^TPR_6|663-685|0.41^Fis1_TPR_C|664-690|0.028^TPR_16|667-715|0.034^TPR_11|672-702|0.068^SHNi-TPR|672-686|0.41^TPR_20|673-693|3.7^TPR_9|680-727|0.003^TPR_17|680-710|0.012^Alkyl_sulf_dimr|689-735|2.7^TPR_1|691-723|3.6e-07^TPR_2|692-723|4.4e-06^TPR_8|692-723|3e-05^DUF3597|692-728|0.0072^TPR_6|693-722|0.011^Fis1_TPR_C|695-723|0.062^RPAP3_C|802-894|5.1e-23 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.28Mb] 10 1 10 1 ONLY_REF_SPLICE YES_LDAS 0.1104 GT 1.9086 AG 1.9656 ENST00000388798.7 1-1435 ENST00000357162.7 9615-11994 chr8|+|[0]100162281-100162420[1]|[2]100165814-100165973[2]|[0]100177816-100177941[2]|[0]100183375-100183436[1]|[2]100183956-100184062[0]|[1]100184628-100184733[1]|[2]100187120-100187250[0]|[1]100191390-100191496[2]|[0]100194112-100194268[0]|[1]100213090-100213428[0]<==>chr8|+|[2]99835197-99835324[0]|[1]99835539-99835738[2]|[0]99848776-99848894[1]|[2]99853451-99854256[0]|[1]99859304-99859480[0]|[1]99861776-99861946[0]|[1]99868289-99868465[0]|[1]99870785-99870887[1]|[2]99871448-99871697[2]|[0]99875418-99875666[2] atgaccaccaaagattatccatcattgtggggctttggaacaacaaaaacattcaaaattcccattgaacatctagatttcaaatacattgaaaaatgttcagatgttaaacatctggaaaaaattctttgcgtgctcagatctggtgaggaaggatattatcctgaacttacagaattttgtgaaaagcatcttcaagccttggcccctgaaagcagagctttgaggaaagataaaccagcagcaacagcagccagttttacagctgaagaatgggaaaaaattgatggtgatataaagagttgggtatcagaaattaaaaaagaagaagataaaatgcactttcatgaaactgagacatttccagcaatgaaagataatttgcctccagttcgtggttcaaacagctgtcttcatgtaggcaaggaaaaatattctaaaagaccaactaaaaagaaaactccaagggattacgcggaatgggataaatttgacgtggagaaggaatgtttaaaaattgatgaagattacaaagaaaagacggtaatagacaagtcacacttgtctaaaattgagacaagaatagatacagcaggtctaactgagaaagaaaaggattttcttgccactcgtgaaaaggagaaaggaaatgaagctttcaactcaggagattatgaagaagcagtgatgtattataccaggagcatatcagcgcttcccactgtagttgcctataacaatcgagctcaagcagaaatcaaattacagaactggaatagtgcttttcaggattgtgaaaaggtcttggagttagaacctggaaacgtaaaggctcttctgcgtcgtgctactacatataaacatcaaaacaagctccgggaagctacagaagatttgagtaaagtactagatgttgagcctgataatgatttggccaagaaaaccttgtcagaggttgaaagagatctgaaaaattctgaagctgcatctgagactcaaaccaaagggaaaaggatggttattcaggaaatagaaaactccgaagatgaagaaggaaaaagcggaagaaaacatgaagatggcggtggagataagaagcccgcggagccggcgggagccgcgcgcgccgcccagccgtgcgtcatgggcaacatccagaagaagctgactggcaaagccgaaggcggcaagcggccggcaaggggcgcgccgcagcggggccagaccccggaggccggcgcggacaagcggagcccacggcgggcctctgcggcggcggcggcgggcggcggcgccaccgggcatccgggcggcgggcagggcgcggagaaccctgccggcctgaagagccagggcaacgagctgttccgaagcgggcagttcgccgaggcggccggcaagtactcggcggcaatcgcgctcctggagccagcagGGCTATAGTGCTGACATATCAAGAACACCTCGGAGTGACTTATTTAACCCTCTCAGAAGACCCTAGTCCTCGAGTAATTATCCACAATAGATGTCCAGTAAAAATGCTTATAAAGGAAAACATTAAAGATATTCCAAAGTTTGAGGTTTATTGCAAAAAAATTCCCTCCGAGTGCTCAATTCATCATGAGCTGTATCATCAGATTTCCAGTTATCCGGACTGCAAGACCAAAGACTTACTTCCAAGCCTACTTTTGAGAGTTGAACCTCTAGATGAAGTAACAACTGAGTGGAGTGATGCCATTGACATCAACAGTCAGGGAACACAGGTTGTGTTCCTGACTGGCTTTGGCTATGTGTATGTGGATGTTGTACATCAGTGTGGCACAGTCTTCATCACTGTGGCCCCAGAAGGAAAAGCAGGACCTATTTTAACCAATACCAACAGAGCGCCAGAGAAGATTGTTACATTTAAAATGTTCATCACTCAGTTAAGCCTGGCAGTGTTTGATGACCTCACCCACCACAAAGCATCAGCTGAGCTTCTGAGACTCACACTGGACAACATTTTTCTCTGTGTGGCCCCGGGAGCTGGTCCCCTCCCTGGGGAAGAGCCTGTGGCTGCGTTGTTTGAACTTTACTGTGTGGAGATCTGCTGTGGGGACCTGCAGCTAGACAACCAGCTTTATAACAAGTCCAATTTCCACTTTGCTGTCTTAGTCTGCCAGGGAGAAAAAGCAGAACCCATTCAGTGTTCCAAAATGCAGAGTCTCCTCATATCCAACAAAGAGTTGGAAGAATACAAGGAAAAATGTTTTATCAAACTTTGCATCACCTTAAATGAAGGCAAGAGCATCCTCTGTGATATTAATGAGTTCAGCTTTGAATTAAAACCTGCTCGGTTATACGTGGAAGACACATTTGTATACTACATCAAGACTTTGTTTGACACCTACCTTCCTAACAGCAGGTTGGCTGGTCACTCCACACACCTCTCCGGGGGTAAACAGGTGTTGCCCATGCAGGTCACACAGCACGCCAGGGCCTTGGTGAATCCTGTGAAGTTACGGAAACTGGTGATCCAGCCAGTAAATTTGCTCGTCAGCATCCACGCTTCCCTCAAGCTGTACATAGCCTCAGACCACACTCCTCTCTCCTTCTCGGTGTTTGAAAGAGGACCCATCTTCACCACTGCGAGGCAGCTTGTGCACGCCCTGGCAATGCACTATGCCGCTGGGGCCCTTTTTAGAGCAGGCTGGGTAGTTGGGTCTCTGGATATTCTTGGCAGCCCTGCAAGCCTGGTGAGAAGCATCGGGAACGGGGTCGCCGACTTCTTCAGGCTTCCGTATGAGGGGCTGACCCGGGGCCCTGGAGCCTTCGTGAGTGGCGTCTCCAGAGGGACCACATCGTTTGTAAAGCACATCTCCAAAGGTACCCTCACATCCATCACCAACCTCGCCACAAGCCTGGCCCGGAACATGGACCGGCTCTCACTGGATGAGGAGCACTACAACCGGCAGGAGGAGTGGCGGCGGCAGCTCCCCGAGAGCCTGGGCGAGGGGCTTCGACAGGGCCTGTCCCGGCTGGGCATCAGCCTGCTTGGTGCAATTGCTGGTATAGTTGATCAGCCGATGCAGAACTTCCAGAAAACATCTGAGGCACAGGCTTCAGCAGGACACAAGGCCAAGGGTGTCATCTCGGGTGTGGGGAAAGGAATCATGGGGGTGTTCACAAAGCCCATCGGAGGAGCTGCTGAGCTGGTGTCACAGACTGGCTATGGTATTTTACATGGAGCTGGACTTTCTCAGCTTCCCAAACAGCGCCATCAGCCAAGTGATCTACATGCTGACCAGGCTCCAAACAGCCATGTCAAATATGTCTGGAAAATGCTTCAGTCTCTGGGCAGACCAGAAGTCCACATGGCCCTGGACGTGGTTCTGGTGAGGGGCTCAGGCCAGGAGCATGAAGGGTGCTTGCTGCTGACATCAGAAGTGCTCTTCGTGGTGAGTGTCAGTGAGGACACACAGCAGCAGGCCTTCCCCGTCACAGAAATCGACTGTGCACAGGACAGCAAGCAGAACAACTTACTCACAGTGCAGCTCAAGCAGCCAAGAGTGGCCTGTGATGTGGAGGTAGATGGAGTCCGAGAGAGACTGTCAGAGCAACAGTACAACAGACTGGTGGACTACATCACAAAGACATCTTGTCACCTGGCCCCCAGCTGTTCTTCCATGCAAATACCATGCCCTGTGGTGGCTGCAGAACCTCCCCCCTCCACTGTTAAAACATACCATTACCTGGTTGATCCACATTTTGCTCAGGTCTTCCTTAGTAAATTTACCATGGTGAAAAATAAAGCCCTGAGGAAAGGGTTTCCTTGA MTTKDYPSLWGFGTTKTFKIPIEHLDFKYIEKCSDVKHLEKILCVLRSGEEGYYPELTEFCEKHLQALAPESRALRKDKPAATAASFTAEEWEKIDGDIKSWVSEIKKEEDKMHFHETETFPAMKDNLPPVRGSNSCLHVGKEKYSKRPTKKKTPRDYAEWDKFDVEKECLKIDEDYKEKTVIDKSHLSKIETRIDTAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEAASETQTKGKRMVIQEIENSEDEEGKSGRKHEDGGGDKKPAEPAGAARAAQPCVMGNIQKKLTGKAEGGKRPARGAPQRGQTPEAGADKRSPRRASAAAAAGGGATGHPGGGQGAENPAGLKSQGNELFRSGQFAEAAGKYSAAIALLEPAGL*C*HIKNTSE*LI*PSQKTLVLE*LSTIDVQ*KCL*RKTLKIFQSLRFIAKKFPPSAQFIMSCIIRFPVIRTARPKTYFQAYF*ELNL*MK*QLSGVMPLTSTVREHRLCS*LALAMCMWMLYISVAQSSSLWPQKEKQDLF*PIPTERQRRLLHLKCSSLS*AWQCLMTSPTTKHQLSF*DSHWTTFFSVWPRELVPSLGKSLWLRCLNFTVWRSAVGTCS*TTSFITSPISTLLS*SAREKKQNPFSVPKCRVSSYPTKSWKNTRKNVLSNFASP*MKARASSVILMSSALN*NLLGYTWKTHLYTTSRLCLTPTFLTAGWLVTPHTSPGVNRCCPCRSHSTPGPW*IL*SYGNW*SSQ*ICSSASTLPSSCT*PQTTLLSPSRCLKEDPSSPLRGSLCTPWQCTMPLGPFLEQAG*LGLWIFLAALQAW*EASGTGSPTSSGFRMRG*PGALEPS*VASPEGPHRL*STSPKVPSHPSPTSPQAWPGTWTGSHWMRSTTTGRRSGGGSSPRAWARGFDRACPGWASACLVQLLV*LISRCRTSRKHLRHRLQQDTRPRVSSRVWGKESWGCSQSPSEELLSWCHRLAMVFYMELDFLSFPNSAISQVIYMLTRLQTAMSNMSGKCFSLWADQKSTWPWTWFW*GAQARSMKGACC*HQKCSSW*VSVRTHSSRPSPSQKSTVHRTASRTTYSQCSSSSQEWPVMWR*MESERDCQSNSTTDWWTTSQRHLVTWPPAVLPCKYHALWWLQNLPPPLLKHTITWLIHILLRSSLVNLPW*KIKP*GKGFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29569 ACAP2::XXYLT1 ENSG00000114331.16::ENSG00000173950.16 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 692 FALSE NA FALSE NA ACAP2 ENSG00000114331.16 protein_coding - - chr3:195274745-195443044:- chr3:195442795:- chr3:194995474-195163773:- chr3:195163524:- XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195070111:- chr3:194789013-194991888:- chr3:194790840:- chr3:195415196,chr3:195415202 chr3:195100677,chr3:195100680 NA NA chr3:195135925,chr3:195135931 chr3:194821406,chr3:194821409 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BAR_3|5-18|1.2e-07 none ["XXYLT1:Oncogene"];["GUO2018CR_TCGA","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS[3569] 8 6 8 4.8 ONLY_REF_SPLICE YES_LDAS 0.1285 GT 1.6729 AG 1.9656 ENST00000447662.1 1-53 ENST00000310380.11 786-1182 chr3|-|[1]195442795-195442847[0]<==>chr3|-|[2]195069715-195070111[2] atgaagatgactgtggatttcgaggagtgtctgaaggactcgccccgcttcagGCACACATTCTGGCAGTTCCGCCATGAGAACCCCCAGACCCGGGTTGGGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACCTGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGACAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAGCTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCATGGCTACAGTGACGTCTTCGAGGCCTATTTCAGGTGTGAGGGCCACGTCAAGATCTACCACGGGAACTGCAACACTCCCATCCCGGAGGACTAG MKMTVDFEECLKDSPRFRHTFWQFRHENPQTRVGGPPPEGLPGFNSGVMLLNLEAMRQSPLYSRLLEPAQVQQLADKYHFRGHLGDQDFFTMIGMEHPKLFHVLDCTWNRQLCTWWRDHGYSDVFEAYFRCEGHVKIYHGNCNTPIPED* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Breast,Lung,Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29570 ZNF619::ADAMTS9 ENSG00000177873.14::ENSG00000163638.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF619 ENSG00000177873.14 protein_coding + + chr3:40477113-40491053:+ chr3:40482704:+ chr3:40518604-40532544:+ chr3:40524195:+ ADAMTS9 ENSG00000163638.13 protein_coding - - chr3:64515654-64688000:- chr3:64658791:- chr3:64501330-64673676:- chr3:64644467:- chr3:40485216,chr3:40485212 chr3:64669447,chr3:64669451 NA NA chr3:40526707,chr3:40526703 chr3:64655123,chr3:64655127 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB|19-59|7.4e-27^DUF5830|237-251|5.6^zf-trcl|238-245|2.3^C1_4|239-267|0.0027^zf-AN1|239-253|0.39^CpXC|240-264|0.74^TFIIS_C|242-251|0.015^zf-RING_7|243-251|6.5^zf-H2C2_2|244-253|0.17^zf-C2H2|244-266|0.00077^zf-C2H2_4|244-266|0.069^zf-C2H2_6|244-250|4.4^Zn-ribbon_8|244-280|0.0025^zf_UBZ|244-260|0.066^Zn_ribbon_SprT|244-261|0.23^XPA_N|245-251|2.1^Zn_ribbon_recom|245-257|0.012^CpXC|254-291|0.0042^DUF5830|260-281|0.022^zf-H2C2_2|262-282|1.5e-09^zf-RING_7|262-278|0.029^DUF6434|268-287|0.21^zf-trcl|270-283|0.003^zf-AN1|270-281|0.012^zf-C2H2|272-294|5.6e-09^zf-C2H2_4|272-294|2.2e-06^zf-C2H2_6|272-283|0.00054^Zn-ribbon_8|272-308|2.8e-05^zf-C2H2_jaz|272-291|0.017^zf_UBZ|272-283|0.0029^Zn_ribbon_SprT|272-311|2.6e-05^zf-met|272-290|0.043^TFIIS_C|272-282|0.004^XPA_N|273-281|0.01^Zn_ribbon_recom|273-296|0.19^C1_4|274-322|0.00052^Zap1_zf1|275-290|0.35^DUF5830|286-317|0.031^zf-H2C2_2|287-311|5.6e-12^zf-RING_7|290-306|0.0064^zf-trcl|298-309|0.11^zf-AN1|298-309|0.11^zf-C2H2|300-322|1.4e-08^zf-C2H2_4|300-322|1.1e-05^zf-C2H2_6|300-310|0.51^zf-C2H2_jaz|300-320|0.73^zf_UBZ|300-319|0.0014^CpXC|300-320|0.065^zf-met|300-319|0.57^TFIIS_C|300-309|0.21^XPA_N|302-311|0.013^Zn_ribbon_recom|302-333|0.2^DUF6434|303-317|2.6^Zap1_zf1|304-318|0.34^zf-H2C2_2|317-339|2.4e-08^CpXC|318-347|0.036^zf-RING_7|320-334|2.4^zf-AN1|325-337|0.023^DUF6434|326-344|1.5^DUF5830|327-338|3.6^zf-trcl|327-339|0.024^zf-C2H2|328-350|4.3e-10^zf-C2H2_4|328-350|1.2e-06^zf-C2H2_6|328-346|0.0014^Zn-ribbon_8|328-363|1.1e-05^zf-C2H2_jaz|328-347|0.014^zf_UBZ|328-339|0.016^Zn_ribbon_SprT|328-364|4.1e-06^zf-met|328-348|0.086^TFIIS_C|328-337|0.011^C1_4|329-379|0.00042^XPA_N|329-338|0.061^Zap1_zf1|331-346|0.029^zf-H2C2_2|343-367|1.7e-12^DUF5830|346-369|0.011^zf-RING_7|347-362|0.042^zf-trcl|354-365|0.063^zf-AN1|354-365|0.056^zf-C2H2|356-378|0.0012^zf-C2H2_4|356-378|0.00015^zf-C2H2_6|356-366|0.015^Zn-ribbon_8|356-392|0.0042^zf-C2H2_jaz|356-366|0.084^zf_UBZ|356-367|0.05^CpXC|356-376|0.0019^zf-met|356-376|4.1^TFIIS_C|356-365|0.055^XPA_N|357-369|0.0073^Zn_ribbon_recom|357-388|0.99^DUF6434|358-369|1.4^Zn_ribbon_SprT|367-393|0.15^zf-H2C2_2|374-393|3.1e-09^DUF5830|376-396|0.0082^zf-RING_7|376-390|0.057^zf-AN1|381-392|0.3^zf-trcl|382-391|0.29^zf-C2H2|384-406|3.4e-08^zf-C2H2_4|384-406|2.6e-05^zf-C2H2_6|384-406|1.8e-05^Zn-ribbon_8-PARTIAL|384-415~|0.00046^zf-C2H2_jaz|384-404|0.00014^zf_UBZ|384-397|0.0036^CpXC|384-403|0.41^zf-met|384-404|4.9e-05^TFIIS_C|384-391|0.13^XPA_N|385-394|0.041^C1_4-PARTIAL|386-415~|0.1^Zap1_zf1|387-402|4.7^zf-H2C2_2-PARTIAL|401-415~|1.3e-11^DUF5830-PARTIAL|402-415~|0.022^zf-RING_7-PARTIAL|403-415~|0.055^zf-trcl-PARTIAL|410-415~|0.58^zf-AN1-PARTIAL|410-415~|0.042^zf-C2H2-PARTIAL|412-415~|9.6e-07^zf-C2H2_4-PARTIAL|412-415~|0.0011^zf-C2H2_6-PARTIAL|412-415~|0.00041^Zn-ribbon_8-PARTIAL|412-415~|0.0053^zf-C2H2_jaz-PARTIAL|412-415~|2.3e-05^zf_UBZ-PARTIAL|412-415~|0.0081^CpXC-PARTIAL|412-415~|0.25^zf-met-PARTIAL|412-415~|0.027^TFIIS_C-PARTIAL|412-415~|0.046^C1_4-PARTIAL|413-415~|0.017^XPA_N-PARTIAL|413-415~|0.0011^Zn_ribbon_recom-PARTIAL|414-415~|0.00022 ADAMTS_CR_3-PARTIAL|~680-752|8.8e-13^ADAMTS_CR_2|683-724|9.4e-06^TSP_1|700-724|5.5^ADAMTS_spacer1|754-871|1.4e-30^TSP1_ADAMTS|884-931|3.6e-07^TSP1_spondin|884-901|0.043^TSP_1|885-915|0.0073^TSP1_CCN|885-894|0.45^TSP1_ADAMTS|939-993|8.8e-09^TSP_1|945-963|0.048^TSP1_spondin|945-957|0.063^TSP1_CCN|945-955|0.0078^TSP1_CCN|991-999|4.6^TSP1_ADAMTS|1001-1053|8.8e-13^TSP1_spondin|1002-1053|4.2e-06^TSP1_CCN|1003-1022|0.0049^TSP_1|1004-1053|5.2e-06^TSP1_CCN|1053-1080|0.00028^TSP1_ADAMTS|1056-1108|5.9e-14^TSP_1|1059-1108|5.6e-07^TSP1_spondin|1059-1108|0.00082^TSP1_CCN|1108-1132|0.00039^TSP1_ADAMTS|1111-1165|3.1e-20^TSP_1|1114-1165|3.1e-08^TSP1_spondin|1114-1165|1.8e-05^TSP1_ADAMTS|1186-1239|3.1e-15^TSP_1|1188-1223|1.8e-08^TSP1_spondin|1188-1239|9.9e-06^TSP1_CCN|1188-1211|2.2e-06^TSP1_CCN|1241-1263|2.9e-05^TSP1_ADAMTS|1242-1295|2.1e-15^TSP_1|1246-1295|7.2e-09^TSP1_spondin|1246-1295|7e-06^TSP1_ADAMTS|1332-1383|2e-14^TSP_1|1334-1383|4e-07^TSP1_CCN|1334-1383|0.019^TSP1_spondin|1335-1383|0.0001^TSP1_CCN|1383-1410|0.00029^TSP1_ADAMTS|1386-1439|5.8e-18^TSP1_spondin|1388-1439|2.7e-05^TSP_1|1389-1418|2.3e-06^TSP1_ADAMTS|1445-1498|5.1e-15^TSP_1|1447-1477|2.8e-08^TSP1_CCN|1447-1465|9.4e-05^TSP1_spondin|1448-1498|9.8e-05^TSP1_CCN|1498-1521|6.7e-06^TSP1_ADAMTS|1501-1554|5.4e-15^TSP_1|1504-1525|2.8e-07^TSP1_spondin|1504-1554|2.8e-05^TSP1_ADAMTS|1559-1612|5.1e-16^TSP1_CCN|1561-1580|0.0055^TSP_1|1562-1612|2.8e-07^TSP1_spondin|1562-1612|6.9e-06^ADAMTS_CR_2|1566-1598|3.4^TSP1_ADAMTS|1616-1675|2.3e-13^TSP_1|1618-1642|1.2e-09^TSP1_CCN|1618-1637|1.5e-05^TSP1_spondin|1619-1635|0.00023^TSP1_ADAMTS|1681-1729|1.7e-13^TSP_1|1684-1730|8.5e-07^TSP1_spondin|1684-1729|1.4e-05^TSP1_CCN|1684-1706|2.2e-05^ADAMTS_CR_2|1699-1741|1.8^GON|1736-1934|2.6e-92^TSP1_spondin|1792-1814|5.5^TSP1_ADAMTS|1920-1934|8.7^TSP1_CCN|1921-1934|3.4 ["Klijn_CellLines"];INTRACHROMOSOMAL[chr3:24.03Mb] 6 5 6 4.4 ONLY_REF_SPLICE YES_LDAS 0.1044 GT 1.8892 AG 1.5546 ENST00000521353.5 1-415 ENST00000498707.5 680-5808 chr3|+|[0]40477980-40478003[2]|[0]40481863-40482016[0]|[1]40482230-40482349[0]|[1]40482588-40482704[0]<==>chr3|-|[2]64522171-64522260[0]|[2]64533166-64533270[0]|[2]64539203-64539294[1]|[0]64541095-64541228[2]|[1]64541320-64541414[0]|[2]64541526-64541620[1]|[0]64541838-64541970[0]|[2]64546758-64546952[0]|[2]64550892-64551062[0]|[2]64561578-64561751[0]|[2]64568368-64568535[0]|[2]64594258-64594434[0]|[2]64596830-64596991[0]|[2]64601944-64602213[0]|[2]64603922-64604089[0]|[2]64604227-64604331[0]|[2]64606960-64607079[0]|[2]64613345-64613509[0]|[2]64615321-64615485[0]|[2]64615960-64616170[2]|[1]64621114-64621240[1]|[0]64622198-64622327[0]|[2]64622420-64622586[1]|[0]64631455-64631550[1]|[0]64631808-64631925[0]|[2]64633472-64633608[1]|[0]64633698-64633879[2]|[1]64641848-64641993[0]|[2]64647940-64648044[0]|[2]64649637-64649778[2]|[1]64651017-64651163[2]|[1]64654353-64654458[1]|[0]64654572-64654612[2]|[1]64655576-64655691[0]|[2]64655792-64655875[0]|[2]64658502-64658791[1] atgctccagacagtgtggttccagggcttgggcaggaacctgttgtttcaggagccagtaacctttgaggatgtggctgtgtacttcacccagaatgaatgggccagcctgcaccctacgcagagggccctatacagggaggtgatgctggagaattatgcaaatgtgacttccttgtacccaactgcagggggctttcctctggatacagagagaactgagaaggttcctggtgcactgtcttcattccttccatcttccagttccctggagctgatcttggccctattgcctatgtcagcatttccattccccaaaccagatctgatattccagctggagcaaggagaagcagcatggggcccagatccctggacacttgctgggggagaggccctgagaggcatgtgcacagAACACAAAAATAGGCACAGTAAAGACAAGAAGAAAACCAGAGCAAGAAAATGGGGAGAAAGGATTAACCTGGCTGGTGACGTAGCAGCATTAAACAGCGGCTTAGCAACAGAGGCATTTTCTGCTTATGGTAATAAGACGGACAACACAAGAGAAAAGAGGACCCACAGAAGGACAAAACGTTTTTTATCCTATCCACGGTTTGTAGAAGTCTTGGTGGTGGCAGACAACAGAATGGTTTCATACCATGGAGAAAACCTTCAACACTATATTTTAACTTTAATGTCAATTGTAGCCTCTATCTATAAAGACCCAAGTATTGGAAATTTAATTAATATTGTTATTGTGAACTTAATTGTGATTCATAATGAACAGGATGGGCCTTCCATATCTTTTAATGCTCAGACAACATTAAAAAACTTTTGCCAGTGGCAGCATTCGAAGAACAGTCCAGGTGGAATCCATCATGATACTGCTGTTCTCTTAACAAGACAGGATATCTGCAGAGCTCACGACAAATGTGATACCTTAGGCCTGGCTGAACTGGGAACCATTTGTGATCCCTATAGAAGCTGTTCTATTAGTGAAGATAGTGGATTGAGTACAGCTTTTACGATCGCCCATGAGCTGGGCCATGTGTTTAACATGCCTCATGATGACAACAACAAATGTAAAGAAGAAGGAGTTAAGAGTCCCCAGCATGTCATGGCTCCAACACTGAACTTCTACACCAACCCCTGGATGTGGTCAAAGTGTAGTCGAAAATATATCACTGAGTTTTTAGACACTGGTTATGGCGAGTGTTTGCTTAACGAACCTGAATCCAGACCCTACCCTTTGCCTGTCCAACTGCCAGGCATCCTTTACAACGTGAATAAACAATGTGAATTGATTTTTGGACCAGGTTCTCAGGTGTGCCCATATATGATGCAGTGCAGACGGCTCTGGTGCAATAACGTCAATGGAGTACACAAAGGCTGCCGGACTCAGCACACACCCTGGGCCGATGGGACGGAGTGCGAGCCTGGAAAGCACTGCAAGTATGGATTTTGTGTTCCCAAAGAAATGGATGTCCCCGTGACAGATGGATCCTGGGGAAGTTGGAGTCCCTTTGGAACCTGCTCCAGAACATGTGGAGGGGGCATCAAAACAGCCATTCGAGAGTGCAACAGACCAGAACCAAAAAATGGTGGAAAATACTGTGTAGGACGTAGAATGAAATTTAAGTCCTGCAACACGGAGCCATGTCTCAAGCAGAAGCGAGACTTCCGAGATGAACAGTGTGCTCACTTTGACGGGAAGCATTTTAACATCAACGGTCTGCTTCCCAATGTGCGCTGGGTCCCTAAATACAGTGGAATTCTGATGAAGGACCGGTGCAAGTTGTTCTGCAGAGTGGCAGGGAACACAGCCTACTATCAGCTTCGAGACAGAGTGATAGATGGAACTCCTTGTGGCCAGGACACAAATGATATCTGTGTCCAGGGCCTTTGCCGGCAAGCTGGATGCGATCATGTTTTAAACTCAAAAGCCCGGAGAGATAAATGTGGGGTTTGTGGTGGCGATAATTCTTCATGCAAAACAGTGGCAGGAACATTTAATACAGTACATTATGGTTACAATACTGTGGTCCGAATTCCAGCTGGTGCTACCAATATTGATGTGCGGCAGCACAGTTTCTCAGGGGAAACAGACGATGACAACTACTTAGCTTTATCAAGCAGTAAAGGTGAATTCTTGCTAAATGGAAACTTTGTTGTCACAATGGCCAAAAGGGAAATTCGCATTGGGAATGCTGTGGTAGAGTACAGTGGGTCCGAGACTGCCGTAGAAAGAATTAACTCAACAGATCGCATTGAGCAAGAACTTTTGCTTCAGGTTTTGTCGGTGGGAAAGTTGTACAACCCCGATGTACGCTATTCTTTCAATATTCCAATTGAAGATAAACCTCAGCAGTTTTACTGGAACAGTCATGGGCCATGGCAAGCATGCAGTAAACCCTGCCAAGGGGAACGGAAACGAAAACTTGTTTGCACCAGGGAATCTGATCAGCTTACTGTTTCTGATCAAAGATGCGATCGGCTGCCCCAGCCTGGACACATTACTGAACCCTGTGGTACAGACTGTGACCTGAGGTGGCATGTTGCCAGCAGGAGTGAATGTAGTGCCCAGTGTGGCTTGGGTTACCGCACATTGGACATCTACTGTGCCAAATATAGCAGGCTGGATGGGAAGACTGAGAAGGTTGATGATGGTTTTTGCAGCAGCCATCCCAAACCAAGCAACCGTGAAAAATGCTCAGGGGAATGTAACACGGGTGGCTGGCGCTATTCTGCCTGGACTGAATGTTCAAAAAGCTGTGACGGTGGGACCCAGAGGAGAAGGGCTATTTGTGTCAATACCCGAAATGATGTACTGGATGACAGCAAATGCACACATCAAGAGAAAGTTACCATTCAGAGGTGCAGTGAGTTCCCTTGTCCACAGTGGAAATCTGGAGACTGGTCAGAGTGCTTGGTCACCTGTGGAAAAGGGCATAAGCACCGCCAGGTCTGGTGTCAGTTTGGTGAAGATCGATTAAATGATAGAATGTGTGACCCTGAGACCAAGCCAACATCTATGCAGACTTGTCAGCAGCCGGAATGTGCATCCTGGCAGGCGGGTCCCTGGGGACAGTGCAGTGTCACTTGTGGACAGGGATACCAGCTAAGAGCAGTGAAATGCATCATTGGGACTTATATGTCAGTGGTAGATGACAATGACTGTAATGCAGCAACTAGACCAACTGATACCCAGGACTGTGAATTACCATCATGTCATCCTCCCCCAGCTGCCCCGGAAACGAGGAGAAGCACATACAGTGCACCAAGAACCCAGTGGCGATTTGGGTCTTGGACCCCATGCTCAGCCACTTGTGGGAAAGGTACCCGGATGAGATACGTCAGCTGCCGAGATGAGAATGGCTCTGTGGCTGACGAGAGTGCCTGTGCTACCCTGCCTAGACCAGTGGCAAAGGAAGAATGTTCTGTGACACCCTGTGGGCAATGGAAGGCCTTGGACTGGAGCTCTTGCTCTGTGACCTGTGGGCAAGGTAGGGCAACCCGGCAAGTGATGTGTGTCAACTACAGTGACCACGTGATCGATCGGAGTGAGTGTGACCAGGATTATATCCCAGAAACTGACCAGGACTGTTCCATGTCACCATGCCCTCAAAGGACCCCAGACAGTGGCTTAGCTCAGCACCCCTTCCAAAATGAGGACTATCGTCCCCGGAGCGCCAGCCCCAGCCGCACCCATGTGCTCGGTGGAAACCAGTGGAGAACTGGCCCCTGGGGAGCATGTTCCAGTACCTGTGCTGGCGGATCCCAGCGGCGTGTTGTTGTATGTCAGGATGAAAATGGATACACCGCAAACGACTGTGTGGAGAGAATAAAACCTGATGAGCAAAGAGCCTGTGAATCCGGCCCTTGTCCTCAGTGGGCTTATGGCAACTGGGGAGAGTGCACTAAGCTGTGTGGTGGAGGCATAAGAACAAGACTGGTGGTCTGTCAGCGGTCCAACGGTGAACGGTTTCCAGATTTGAGCTGTGAAATTCTTGATAAACCTCCCGATCGTGAGCAGTGTAACACACATGCTTGTCCACACGACGCTGCATGGAGTACTGGCCCTTGGAGCTCGTGTTCTGTCTCTTGTGGTCGAGGGCATAAACAACGAAATGTTTACTGCATGGCAAAAGATGGAAGCCATTTAGAAAGTGATTACTGTAAGCACCTGGCTAAGCCACATGGGCACAGAAAGTGCCGAGGAGGAAGATGCCCCAAATGGAAAGCTGGCGCTTGGAGTCAGTGCTCTGTGTCCTGTGGCCGAGGCGTACAGCAGAGGCATGTGGGCTGTCAGATCGGAACACACAAAATAGCCAGAGAGACCGAGTGCAACCCATACACCAGACCGGAGTCGGAACGCGACTGCCAAGGCCCACGGTGTCCCCTCTACACTTGGAGGGCAGAGGAATGGCAAGAATGCACCAAGACCTGCGGCGAAGGCTCCAGGTACCGCAAGGTGGTGTGTGTGGATGACAACAAAAACGAGGTGCATGGGGCACGCTGTGACGTGAGCAAGCGGCCGGTGGACCGTGAAAGCTGTAGTTTGCAACCCTGCGAGTATGTCTGGATCACAGGAGAATGGTCAGAGTGCTCAGTGACCTGTGGAAAAGGCTACAAACAAAGGCTTGTCTCGTGCAGCGAGATTTACACCGGGAAGGAGAATTATGAATACAGCTACCAAACCACCATCAACTGCCCAGGCACGCAGCCCCCCAGTGTTCACCCCTGTTACCTGAGGGACTGCCCTGTCTCGGCCACCTGGAGAGTTGGCAACTGGGGGAGCTGCTCAGTGTCTTGTGGTGTTGGAGTGATGCAGAGATCTGTGCAATGTTTAACCAATGAGGACCAACCCAGCCACTTATGCCACACTGATCTGAAGCCAGAAGAACGAAAAACCTGCCGTAATGTCTATAACTGTGAGTTACCCCAGAATTGCAAGGAGGTAAAAAGACTTAAAGGTGCCAGTGAAGATGGTGAATATTTCCTGATGATTAGAGGAAAGCTTCTGAAGATATTCTGTGCGGGGATGCACTCTGACCACCCCAAAGAGTACGTGACACTGGTGCATGGAGACTCTGAGAATTTCTCCGAGGTTTATGGGCACAGGTTACACAACCCAACAGAATGTCCCTATAACGGGAGCCGGCGCGATGACTGCCAATGTCGGAAGGATTACACGGCCGCTGGGTTTTCCAGTTTTCAGAAAATCAGAATAGACCTGACCAGCATGCAGATAATCACCACTGACTTACAGTTTGCAAGGACAAGCGAAGGACATCCCGTCCCTTTTGCCACAGCCGGGGATTGCTACAGCGCTGCCAAGTGCCCACAGGGTCGTTTTAGCATCAACCTTTATGGAACCGGCTTGTCTTTAACTGAATCTGCCAGATGGATATCACAAGGGAATTATGCTGTCTCTGACATCAAGAAGTCGCCGGATGGTACCCGAGTCGTAGGGAAATGCGGTGGTTACTGTGGAAAATGCACTCCATCCTCTGGTACTGGCCTGGAGGTGCGAGTTTTATAG MLQTVWFQGLGRNLLFQEPVTFEDVAVYFTQNEWASLHPTQRALYREVMLENYANVTSLYPTAGGFPLDTERTEKVPGALSSFLPSSSSLELILALLPMSAFPFPKPDLIFQLEQGEAAWGPDPWTLAGGEALRGMCTEHKNRHSKDKKKTRARKWGERINLAGDVAALNSGLATEAFSAYGNKTDNTREKRTHRRTKRFLSYPRFVEVLVVADNRMVSYHGENLQHYILTLMSIVASIYKDPSIGNLINIVIVNLIVIHNEQDGPSISFNAQTTLKNFCQWQHSKNSPGGIHHDTAVLLTRQDICRAHDKCDTLGLAELGTICDPYRSCSISEDSGLSTAFTIAHELGHVFNMPHDDNNKCKEEGVKSPQHVMAPTLNFYTNPWMWSKCSRKYITEFLDTGYGECLLNEPESRPYPLPVQLPGILYNVNKQCELIFGPGSQVCPYMMQCRRLWCNNVNGVHKGCRTQHTPWADGTECEPGKHCKYGFCVPKEMDVPVTDGSWGSWSPFGTCSRTCGGGIKTAIRECNRPEPKNGGKYCVGRRMKFKSCNTEPCLKQKRDFRDEQCAHFDGKHFNINGLLPNVRWVPKYSGILMKDRCKLFCRVAGNTAYYQLRDRVIDGTPCGQDTNDICVQGLCRQAGCDHVLNSKARRDKCGVCGGDNSSCKTVAGTFNTVHYGYNTVVRIPAGATNIDVRQHSFSGETDDDNYLALSSSKGEFLLNGNFVVTMAKREIRIGNAVVEYSGSETAVERINSTDRIEQELLLQVLSVGKLYNPDVRYSFNIPIEDKPQQFYWNSHGPWQACSKPCQGERKRKLVCTRESDQLTVSDQRCDRLPQPGHITEPCGTDCDLRWHVASRSECSAQCGLGYRTLDIYCAKYSRLDGKTEKVDDGFCSSHPKPSNREKCSGECNTGGWRYSAWTECSKSCDGGTQRRRAICVNTRNDVLDDSKCTHQEKVTIQRCSEFPCPQWKSGDWSECLVTCGKGHKHRQVWCQFGEDRLNDRMCDPETKPTSMQTCQQPECASWQAGPWGQCSVTCGQGYQLRAVKCIIGTYMSVVDDNDCNAATRPTDTQDCELPSCHPPPAAPETRRSTYSAPRTQWRFGSWTPCSATCGKGTRMRYVSCRDENGSVADESACATLPRPVAKEECSVTPCGQWKALDWSSCSVTCGQGRATRQVMCVNYSDHVIDRSECDQDYIPETDQDCSMSPCPQRTPDSGLAQHPFQNEDYRPRSASPSRTHVLGGNQWRTGPWGACSSTCAGGSQRRVVVCQDENGYTANDCVERIKPDEQRACESGPCPQWAYGNWGECTKLCGGGIRTRLVVCQRSNGERFPDLSCEILDKPPDREQCNTHACPHDAAWSTGPWSSCSVSCGRGHKQRNVYCMAKDGSHLESDYCKHLAKPHGHRKCRGGRCPKWKAGAWSQCSVSCGRGVQQRHVGCQIGTHKIARETECNPYTRPESERDCQGPRCPLYTWRAEEWQECTKTCGEGSRYRKVVCVDDNKNEVHGARCDVSKRPVDRESCSLQPCEYVWITGEWSECSVTCGKGYKQRLVSCSEIYTGKENYEYSYQTTINCPGTQPPSVHPCYLRDCPVSATWRVGNWGSCSVSCGVGVMQRSVQCLTNEDQPSHLCHTDLKPEERKTCRNVYNCELPQNCKEVKRLKGASEDGEYFLMIRGKLLKIFCAGMHSDHPKEYVTLVHGDSENFSEVYGHRLHNPTECPYNGSRRDDCQCRKDYTAAGFSSFQKIRIDLTSMQIITTDLQFARTSEGHPVPFATAGDCYSAAKCPQGRFSINLYGTGLSLTESARWISQGNYAVSDIKKSPDGTRVVGKCGGYCGKCTPSSGTGLEVRVL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29572 ZDHHC18::PIGV ENSG00000204160.12::ENSG00000060642.12 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 689 FALSE NA FALSE NA ZDHHC18 ENSG00000204160.12 protein_coding + + chr1:26826688-26857604:+ chr1:26853825:+ chr1:27153179-27184095:+ chr1:27180316:+ PIGV ENSG00000060642.12 protein_coding + + chr1:26787054-26800659:+ chr1:26790759:+ chr1:27113545-27127150:+ chr1:27117250:+ chr1:26856990,chr1:26856986 chr1:26788309,chr1:26788302 NA NA chr1:27183481,chr1:27183477 chr1:27114800,chr1:27114793 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ZDHHC18:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[28312] 4 8 4 7.14 ONLY_REF_SPLICE YES_LDAS 0.1119 GT 1.9656 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29573 DIP2C::SFMBT2 ENSG00000151240.18::ENSG00000198879.13 OAW42 SRR8615514 SRR8670739 OVARY carcinoma metastasis star-fusion TRUE FALSE TRUE 688 FALSE NA FALSE NA DIP2C ENSG00000151240.18 protein_coding - - chr10:274201-689668:- chr10:689494:- chr10:320141-735608:- chr10:735434:- SFMBT2 ENSG00000198879.13 protein_coding - - chr10:7158624-7411488:- chr10:7285954:- chr10:7200586-7453450:- chr10:7327916:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DMAP_binding-PARTIAL|9-85~|5.9e-38^GvpG|13-43|3.5e-06 MBT-PARTIAL|~434-478|2.9e-27^SAM_PNT-PARTIAL|~434-445|3.3^SLED|527-641|3.6e-42^SAM_PNT|808-864|4.4e-08^SAM_1|822-884|9e-09^SAM_2|822-884|1.1e-07^SAM_Ste50p|822-881|4.2e-06 ["DIP2C:Oncogene"];["SFMBT2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:6.47Mb] 3 10 3 10 ONLY_REF_SPLICE YES_LDAS 0.1305 GT 1.8295 AG 1.7232 ENST00000280886.12 1-85 ENST00000673876.1 434-2682 chr10|-|[0]689494-689578[0]<==>chr10|-|[2]7163770-7163910[0]|[2]7170928-7171056[0]|[2]7171895-7172158[0]|[2]7172495-7172661[1]|[0]7175990-7176165[2]|[1]7188624-7188733[0]|[2]7197548-7197687[1]|[0]7200414-7200484[2]|[1]7202480-7202522[1]|[0]7205815-7205928[1]|[0]7220411-7220537[0]|[2]7227855-7227937[1]|[0]7243558-7243705[0]|[2]7248548-7248649[0]|[2]7276892-7276989[1]|[0]7283904-7284150[0]|[2]7285866-7285954[1] atggcggaccgcagcctggagggcatggcgctgcccctggaggtgcgggcgcgcctggccgagctggagctggagctgtcggaagCAATCAAAGAGAAGTACACAGACTGGACAGAATTTCTCATACGTGACTTGACTGGTTCGAGGACAGCACCCGCCAACCTCCTGGAAGGTCCTCTGCGAGGGAAAGGCCCTATAGACCTCATTACAGTTGGTTCCTTAATAGAACTTCAGGATTCCCAGAACCCTTTTCAGTACTGGATAGTTAGTGTGATTGAAAATGTTGGAGGAAGATTACGCCTTCGCTATGTGGGATTGGAGGACACTGAATCCTATGACCAGTGGTTGTTTTACTTGGATTACAGACTTCGACCAGTTGGTTGGTGTCAAGAGAATAAATACAGAATGGACCCACCTTCAGAAATCTATCCTTTGAAGATGGCCTCTGAATGGAAATGTACTCTGGAAAAATCCCTTATTGATGCTGCCAAATTTCCTCTTCCAATGGAAGTGTTTAAGGATCACGCAGATTTGCGAAGCCATTTCTTCACAGTTGGGATGAAGCTTGAGACAGTGAATATGTGCGAGCCCTTTTACATCTCTCCTGCGTCGGTGACTAAGGTTTTTAACAATCACTTTTTTCAAGTGACTATTGATGACCTAAGACCTGAACCAAGTAAACTGTCAATGCTGTGCCATGCAGATTCTTTGGGGATTTTGCCAGTACAGTGGTGCCTTAAAAATGGAGTCAGCCTCACTCCTCCCAAAGGTTACTCTGGCCAGGACTTCGACTGGGCAGATTATCACAAGCAGCATGGGGCGCAGGAAGCCCCTCCCTTCTGCTTCCGAAATACATCATTCAGTCGAGGTTTCACAAAGAACATGAAACTTGAAGCTGTGAACCCCAGGAATCCAGGAGAACTGTGTGTGGCCTCCGTTGTGAGTGTGAAGGGGCGGCTAATGTGGCTTCACCTGGAAGGGCTGCAGACTCCTGTTCCAGAGGTCATTGTTGATGTGGAATCCATGGACATCTTCCCAGTGGGCTGGTGTGAAGCCAATTCTTATCCTTTGACTGCACCACACAAAACAGTCTCACAAAAGAAGAGAAAGATTGCAGTCGTGCAACCAGAGAAACAATTGCCGCCCACAGTGCCTGTTAAGAAAATACCTCATGACCTTTGTTTATTCCCTCACCTGGACACCACAGGAACCGTCAACGGGAAATACTGCTGTCCTCAGCTCTTCATCAACCACAGGTGTTTCTCAGGCCCTTACCTGAACAAAGGAAGGATTGCAGAGCTACCTCAGTCGGTGGGACCGGGCAAATGCGTGCTGGTTCTTAAAGAGGTTCTTAGCATGATAATCAACGCAGCCTACAAGCCTGGAAGGGTATTAAGAGAATTACAGCTGGTAGAAGATCCCCACTGGAATTTCCAGGAAGAGACGCTGAAGGCCAAATACAGAGGCAAAACATACAGGGCTGTGGTCAAAATCGTACGGACATCTGACCAAGTCGCAAATTTCTGCCGCCGAGTCTGTGCCAAGCTAGAGTGCTGTCCAAATTTGTTTAGTCCTGTGCTGATATCTGAAAACTGCCCAGAGAACTGCTCCATTCATACCAAAACCAAATACACCTATTACTATGGAAAGAGAAAGAAGATCTCCAAGCCCCCCATCGGGGAAAGCAACCCCGACAGCGGACACCCCAAACCCGCCAGGCGGAGGAAGCGACGGAAATCCATTTTCGTGCAGAAGAAACGGAGGTCTTCTGCCGTGGACTTCACCGCGGGCTCGGGGGAGGAAAGTGAAGAGGAGGACGCTGACGCCATGGACGATGACACCGCCAGTGAGGAGACCGGCTCCGAGCTCCGGGATGACCAGACGGACACCTCGTCGGCGGAGGTGCCCTCGGCCCGGCCCCGGAGGGCCGTCACCCTGCGGAGCGGCTCAGAGCCCGTGCGCCGGCCACCCCCAGAGAGGACACGAAGGGGCCGCGGGGCGCCGGCTGCCTCCTCAGCAGAGGAAGGGGAGAAGTGCCCGCCGACCAAGCCCGAGGGGACAGAGGACACGAAACAGGAGGAGGAGGAGAGACTGGTTCTGGAGAGCAACCCGTTGGAGTGGACGGTCACCGACGTGGTGAGGTTCATTAAGCTGACAGACTGTGCCCCCTTGGCCAAGATATTTCAGGAGCAGGATATTGACGGCCAAGCACTCCTGCTTCTGACCCTTCCGACGGTGCAGGAGTGCATGGAGCTGAAGCTGGGGCCTGCCATCAAGTTATGCCACCAGATCGAGAGAGTCAAAGTGGCTTTCTACGCCCAGTACGCCAACTGA MADRSLEGMALPLEVRARLAELELELSEAIKEKYTDWTEFLIRDLTGSRTAPANLLEGPLRGKGPIDLITVGSLIELQDSQNPFQYWIVSVIENVGGRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFKDHADLRSHFFTVGMKLETVNMCEPFYISPASVTKVFNNHFFQVTIDDLRPEPSKLSMLCHADSLGILPVQWCLKNGVSLTPPKGYSGQDFDWADYHKQHGAQEAPPFCFRNTSFSRGFTKNMKLEAVNPRNPGELCVASVVSVKGRLMWLHLEGLQTPVPEVIVDVESMDIFPVGWCEANSYPLTAPHKTVSQKKRKIAVVQPEKQLPPTVPVKKIPHDLCLFPHLDTTGTVNGKYCCPQLFINHRCFSGPYLNKGRIAELPQSVGPGKCVLVLKEVLSMIINAAYKPGRVLRELQLVEDPHWNFQEETLKAKYRGKTYRAVVKIVRTSDQVANFCRRVCAKLECCPNLFSPVLISENCPENCSIHTKTKYTYYYGKRKKISKPPIGESNPDSGHPKPARRRKRRKSIFVQKKRRSSAVDFTAGSGEESEEEDADAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGRGAPAASSAEEGEKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVTDVVRFIKLTDCAPLAKIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERVKVAFYAQYAN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29574 CAPZA2::COMETT ENSG00000198898.16::ENSG00000231210.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 693 FALSE NA FALSE NA CAPZA2 ENSG00000198898.16 protein_coding + + chr7:116811070-116922049:+ chr7:116862650:+ chr7:116451124-116562103:+ chr7:116502704:+ COMETT ENSG00000231210.3 lncRNA - - chr7:116563594-116663829:- chr7:116573744:- chr7:116203648-116303883:- chr7:116213798:- chr7:116864503,chr7:116864513,chr7:116864497,chr7:116864522,chr7:116864529,chr7:116864532,chr7:116864550 chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217,chr7:116597217 NA NA chr7:116504557,chr7:116504567,chr7:116504551,chr7:116504576,chr7:116504583,chr7:116504586,chr7:116504604 chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271,chr7:116237271 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 1209 204 1209 204 ONLY_REF_SPLICE YES_LDAS 14.9134 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29575 VAV2::DEUP1 ENSG00000160293.17::ENSG00000165325.15 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 697 FALSE NA FALSE NA VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133861374:- chr9:136627016-136857726:- chr9:136726496:- DEUP1 ENSG00000165325.15 protein_coding + + chr11:93329971-93438487:+ chr11:93355371:+ chr11:93063137-93171653:+ chr11:93088537:+ chr9:133844791,chr9:133844922,chr9:133844793 chr11:93353866,chr11:93353898,chr11:93353864 NA NA chr9:136709913,chr9:136710044,chr9:136709915 chr11:93087032,chr11:93087064,chr11:93087030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH|2-118|3.3e-24^CAMSAP_CH|19-103|3.6e-29^CDC24|32-115|2.5e-05^C1_2|157-165|6.9^RhoGEF|198-369|3e-43^SH3_2|208-225|0.15^Molydop_binding|210-246|0.37^zf-RING_16|274-289|0.54^PLU-1-PARTIAL|286-380~|1e-05^CotJB-PARTIAL|354-380~|0.011^CH-PARTIAL|360-380~|2.9 CEP63-PARTIAL|~30-280|1.2e-105^DASH_Dad2-PARTIAL|~30-31|1.5^Fez1|35-156|1.1e-05^Tup_N|61-101|2.3e-06^DASH_Dad2|72-109|0.0034^Tup_N|132-200|0.027^DASH_Dad2|155-155|1.3^Fez1|163-291|0.0043^Tup_N|230-267|0.077^DASH_Dad2|243-300|1.1e-05^CEP63|320-431|0.11^Fez1|340-478|0.27^Tup_N|341-380|0.00017^CEP63|350-510|2.4^DASH_Dad2|366-377|1.1^Tup_N|399-417|2.6^Tup_N|459-473|0.42^DASH_Dad2|460-514|0.68^CEP63|567-595|1.1^Tup_N|567-586|0.11 ["VAV2:Oncogene"];["CCLE_StarF2019"] 115 58 115 58 ONLY_REF_SPLICE YES_LDAS 1.826 GT 1.6895 AG 1.8892 ENST00000371851.1 1-380 ENST00000298050.9 30-1815 chr9|-|[1]133861374-133861432[0]|[2]133939103-133939219[0]|[2]133992075-133992278[0]<==>chr11|+|[2]93355371-93355542[2]|[0]93356948-93357043[2]|[0]93364160-93364294[2]|[0]93370073-93370186[2]|[0]93371038-93371280[2]|[0]93385398-93385543[1]|[2]93389020-93389125[2]|[0]93394459-93394656[2]|[0]93396239-93396325[2]|[0]93408231-93408427[1]|[2]93415000-93415114[2]|[0]93437543-93437719[2] atggagcagtggcggcagtgcggccgctggctcatcgattgcaaggtcctgccgcccaaccaccgggtggtgtggccctcggccgtggtcttcgacctggcgcaggcgctgcgcgacggggtccttctgtgccagctgctgcacaacctctcccccggctccatcgacctcaaggacatcaacttccggccgcagatgtcccagtttctgtgtttgaagaacatacgcaccttcctgaaagtctgccacgataaatttggattaaggaacagcgagctgtttgacccctttgacctcttcgatgtgcgagactttggaaaggtcatctccgcggtgtcgaggctctccctgcacagcatcgcgcagaacaaagggatcagAACTTCTCCTTGTGAGGCTGAGCTTCAGGAATTAATGGAACAAATTGACATCATGGTAAGCAACAAGAAAATGGATTGGGAAAGAAAGATGCGGGCTTTGGAGACACGATTAGATCTTCGGGATCAAGAATTGGCAAATGCACAAACTTGTTTGGATCAGAAAGGTCAAGAGGTAGGGTTACTTCGACAGAAATTGGACAGTCTGGAAAAATGTAATTTAGCAATGACTCAGAATTATGAAGGACAACTACAAAGCCTAAAGGCTCAATTTTCCAAACTAACAAATAACTTTGAAAAACTGAGATTACATCAGATGAAACAAAACAAAGTTCCACGAAAAGAATTACCACACCTTAAAGAAGAAATACCCTTTGAACTGAGCAATTTGAACCAGAAATTAGAGGAATTTAGAGCAAAGTCAAGAGAATGGGACAAGCAAGAGATATTATATCAGACTCATCTGATTTCTTTAGATGCTCAACAAAAATTATTATCTGAGAAGTGTAATCAGTTTCAGAAACAGGCACAAAGTTACCAAACTCAACTAAATGGTAAAAAACAGTGCTTAGAAGACAGCAGCTCTGAAATTCCTCGTTTGATATGTGACCCAGATCCCAATTGTGAAATCAATGAAAGAGATGAGTTCATTATTGAAAAACTGAAATCAGCTGTAAATGAGATAGCACTAAGCAGGAATAAATTACAAGATGAAAATCAGAAGCTCTTGCAAGAACTGAAAATGTACCAAAGACAGTGCCAGGCCATGGAAGCAGGTCTCTCAGAGGTAAAAAGTGAGTTACAGTCACGTGATGATCTCTTGAGAATTATAGAAATGGAACGATTGCAATTACACAGAGAATTATTAAAAATAGGAGAGTGCCAAAATGCTCAAGGAAATAAAACAAGACTTGAATCATCTTATTTGCCTTCTATTAAAGAACCAGAAAGGAAAATAAAAGAGCTGTTTTCAGTGATGCAAGATCAACCAAATCATGAAAAAGAATTGAACAAGATAAGAAGCCAACTCCAACAGGTGGAAGAGTACCATAACTCTGAGCAGGAAAGAATGAGGAATGAAATCTCTGACCTAACAGAAGAGCTTCATCAGAAGGAGATCACTATAGCAACTGTCACAAAGAAAGCTGCCCTTCTGGAAAAACAGTTAAAAATGGAATTAGAAATAAAAGAAAAAATGTTAGCAAAACAAAAGGTCTCAGATATGAAATATAAAGCTGTCAGAACTGAAAACACACATCTAAAAGGAATGATGGGAGATTTAGACCCCGGAGAATACATGAGTATGGACTTCACTAACAGGGAACAGTCAAGGCATACATCTATTAATAAACTGCAATATGAGAATGAAAGGCTCCGAAATGATCTTGCAAAACTTCATGTCAATGGAAAATCAACCTGGACTAATCAAAACACCTATGAAGAAACAGGAAGATATGCCTATCAAAGCCAAATAAAAGTGGAACAAAATGAAGAGAGACTTAGTCATGACTGTGAGCCAAACAGAAGTACAATGCCTCCCTTGCCACCTTCGACATTTCAAGCCAAAGAAATGACAAGTCCTTTGGTTAGTGATGATGATGTATTCCCACTGTCTCCCCCAGATATGTCCTTCCCAGCATCTTTGGCTGCACAGCATTTCCTTCTGGAAGAAGAGAAACGAGCAAAAGAACTTGAAAAACTTCTAAATACACATATTGATGAACTGCAAAGACACACAGAATTTACTCTTAATAAATACTCCAAGCTAAAACAAAATAGACACATATGA MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGKVISAVSRLSLHSIAQNKGIRTSPCEAELQELMEQIDIMVSNKKMDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQNYEGQLQSLKAQFSKLTNNFEKLRLHQMKQNKVPRKELPHLKEEIPFELSNLNQKLEEFRAKSREWDKQEILYQTHLISLDAQQKLLSEKCNQFQKQAQSYQTQLNGKKQCLEDSSSEIPRLICDPDPNCEINERDEFIIEKLKSAVNEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDDLLRIIEMERLQLHRELLKIGECQNAQGNKTRLESSYLPSIKEPERKIKELFSVMQDQPNHEKELNKIRSQLQQVEEYHNSEQERMRNEISDLTEELHQKEITIATVTKKAALLEKQLKMELEIKEKMLAKQKVSDMKYKAVRTENTHLKGMMGDLDPGEYMSMDFTNREQSRHTSINKLQYENERLRNDLAKLHVNGKSTWTNQNTYEETGRYAYQSQIKVEQNEERLSHDCEPNRSTMPPLPPSTFQAKEMTSPLVSDDDVFPLSPPDMSFPASLAAQHFLLEEEKRAKELEKLLNTHIDELQRHTEFTLNKYSKLKQNRHI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29577 GPBP1L1::IPP ENSG00000159592.11::ENSG00000197429.11 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 696 FALSE NA FALSE NA GPBP1L1 ENSG00000159592.11 protein_coding - - chr1:45627304-45688113:- chr1:45659028:- chr1:46092976-46153785:- chr1:46124700:- IPP ENSG00000197429.11 protein_coding - - chr1:45694324-45750653:- chr1:45727798:- chr1:46159996-46216325:- chr1:46193470:- chr1:45658259,chr1:45658265 chr1:45729693,chr1:45729696 NA NA chr1:46123931,chr1:46123937 chr1:46195365,chr1:46195368 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.01Mb];LOCAL_REARRANGEMENT:-:[6211] 81 103 81 103 ONLY_REF_SPLICE YES_LDAS 1.942 GT 1.9086 AG 1.9086 ENST00000290795.7 1-60 ENST00000396478.4 881-1755 chr1|-|[2]45659028-45659087[0]<==>chr1|-|[2]45699966-45700190[0]|[2]45714246-45714466[1]|[0]45716895-45717017[1]|[0]45719203-45719340[1]|[0]45727631-45727798[1] atggcgcagcatgattttgttcctgcttggctaaatttctcaacaccacagtcagctaagGTGGATATACTCGGTTGCAGGGGGGTCGCTGGAGTGATAGCAGAGCCCTCAGCTGTGTAGAACGTTTTGACACCTTTAGCCAGTACTGGACCACTGTGTCTTCACTTCATCAGGCTCGAAGTGGGCTGGGAGTAACAGTTCTGGGAGGGATGGTCTACGCTATTGGAGGTGAAAAGGATTCAATGATTTTTGATTGTACTGAATGCTATGATCCAGTTACTAAACAGTGGACAACTGTAGCTTCGATGAATCATCCCCGCTGCGGCTTAGGAGTGTGTGTGTGTTATGGGGCTATCTATGCTTTGGGTGGATGGGTTGGAGCTGAGATAGGGAACACCATTGAACGATTTGATCCTGATGAAAATAAATGGGAAGTAGTTGGTAACATGGCTGTGTCACGCTACTACTTTGGGTGCTGTGAAATGCAAGGTTTAATTTATGTAATTGGGGGCATCAGCAATGAAGGAATAGAACTTCGTTCTTTTGAAGTCTATGATCCACTTTCTAAGCGTTGGTCTCCACTTCCTCCAATGGGAACCAGGAGAGCATATCTTGGTGTGGCTGCACTCAATGACTGCATCTATTCTGTTGGAGGATGGAATGAGACCCAAGATGCTCTTCATACTGTAGAAAAATATTCCTTTGAAGAGGAAAAGTGGGTTGAAGTTGCCTCAATGAAAGTGCCTAGAGCAGGCATGTGTGTTGTGGCAGTCAATGGTCTTCTGTATGTTTCTGGAGGTCGATCTTCCAGCCATGATTTTTTGGCTCCAGGTACCTTGGACTCAGTTGAAGTTTATAACCCTCATTCAGATACATGGACAGAAATTGGTAACATGATCACCAGTCGTTGTGAAGGGGGCGTTGCTGTGCTATGA MAQHDFVPAWLNFSTPQSAKVDILGCRGVAGVIAEPSAV*NVLTPLASTGPLCLHFIRLEVGWE*QFWEGWSTLLEVKRIQ*FLIVLNAMIQLLNSGQL*LR*IIPAAA*ECVCVMGLSMLWVDGLELR*GTPLNDLILMKINGK*LVTWLCHATTLGAVKCKV*FM*LGASAMKE*NFVLLKSMIHFLSVGLHFLQWEPGEHILVWLHSMTASILLEDGMRPKMLFIL*KNIPLKRKSGLKLPQ*KCLEQACVLWQSMVFCMFLEVDLPAMIFWLQVPWTQLKFITLIQIHGQKLVT*SPVVVKGALLCY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29579 ARID1A::RPS6KA1 ENSG00000117713.21::ENSG00000117676.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 700 FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26732792:+ chr1:27019727-27108595:+ chr1:27059283:+ RPS6KA1 ENSG00000117676.14 protein_coding + + chr1:26529761-26575030:+ chr1:26571449:+ chr1:26856252-26901521:+ chr1:26897940:+ chr1:26745868,chr1:26746055 chr1:26564116,chr1:26564146 NA NA chr1:27072359,chr1:27072546 chr1:26890607,chr1:26890637 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ARID|1020-1104|6.6e-22 none ["ARID1A:FoundationOne_panel","ARID1A:Oncogene","ARID1A:ArcherDX_panel"];["RPS6KA1:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.12Mb] 71 72 71 72 ONLY_REF_SPLICE YES_LDAS 1.5093 GT 1.6402 AG 1.9219 ENST00000324856.13 1-1920 ENST00000374168.7 1591-2208 chr1|+|[0]26696404-26697540[2]|[0]26729651-26729863[2]|[0]26731152-26731604[2]|[0]26732676-26732792[2]<==>chr1|+|[0]26571449-26571610[2]|[0]26571849-26571925[1]|[2]26572176-26572293[2]|[0]26573224-26573361[2]|[0]26574079-26574201[2] atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccgccctcggagctgaagaaagccgagcagcagcagcgggaggaggcggggggcgaggcggcggcggcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgccgtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggtggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggcggcggcggtggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcgctgcagagcggcggcggcgggggcctggagccctacgcggggccccagcagaactctcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctaccccccgcccgccccggcctacgcgctgagctccccgagaggtggcactccgggctccggcgcggcggcggctgccggctccaagccgcctccctcctccagcgcctccgcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctccgcggccggcgggggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacagtggcgggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgttggggggctgcggcggcggcagctgcggcggcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcccggacccctcagccatccagtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaacccatactcgcagcaacagggacctccgtcaggaccgcagcaaggacatgggtacccagggcagccatacgggtcccagaccccgcagcggtacccgatgaccatgcagggccgggcgcagagtgccatgggcggcctctcttatacacagcagattcctccttatggacaacaaggccccagcgggtatggtcaacagggccagactccatattacaaccagcaaagtcctcaccctcagcagcagcagccaccctactcccagcaaccaccgtcccagacccctcatgcccaaccttcgtatcagcagcagccacagtctcaaccaccacagctccagtcctctcagcctccatactcccagcagccatcccagcctccacatcagcagtccccggctccatacccctcccagcagtcgacgacacagcagcacccccagagccagcccccctactcacagccacaggctcagtctccttaccagcagcagcaacctcagcagccagcaccctcgacgctctcccagcaggctgcgtatcctcagccccagtctcagcagtcccagcaaactgcctattcccagcagcgcttccctccaccgcaggagctatctcaagattcatttgggtctcaggcatcctcagccccctcaatgacctccagtaagggagggcaagaagatatgaacctgagccttcagtcaagaccctccagcttgcctGTTGTGCACAGGGACCTGAAGCCCAGCAACATCCTGTATGTGGACGAGTCCGGGAATCCCGAGTGCCTGCGCATCTGTGACTTTGGTTTTGCCAAACAGCTGCGGGCTGAGAATGGGCTCCTCATGACACCTTGCTACACAGCCAACTTTGTGGCGCCTGAGGTGCTGAAGCGCCAGGGCTACGATGAAGGCTGCGACATCTGGAGCCTGGGCATTCTGCTGTACACCATGCTGGCAGGATATACTCCATTTGCCAACGGTCCCAGTGACACACCAGAGGAAATCCTAACCCGGATCGGCAGTGGGAAGTTTACCCTCAGTGGGGGAAATTGGAACACAGTTTCAGAGACAGCCAAGGACCTGGTGTCCAAGATGCTACACGTGGATCCCCACCAGCGCCTCACAGCTAAGCAGGTTCTGCAGCATCCATGGGTCACCCAGAAAGACAAGCTTCCCCAAAGCCAGCTGTCCCACCAGGACCTACAGCTTGTGAAGGGAGCCATGGCTGCCACGTACTCCGCACTCAACAGCTCCAAGCCCACCCCCCAGCTGAAGCCCATCGAGTCATCCATCCTGGCCCAGCGGCGAGTGAGGAAGTTGCCATCCACCACCCTGTGA MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKDKLPQSQLSHQDLQLVKGAMAATYSALNSSKPTPQLKPIESSILAQRRVRKLPSTTL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Ribosomal protein S6 kinase alpha-1 AGC RSK RSKp90 Q15418 TRUE Stomach exact TRUE Stomach adenocarcinoma STOMACH exact 27102198 FALSE 26897940 TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 29580 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22661205:+ chr12:22778009-22843599:+ chr12:22814139:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22601352:+ chr12:22562171-22771802:+ chr12:22754286:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 56 61 56 40.87 ONLY_REF_SPLICE YES_LDAS 1.0224 GT 1.5546 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 29583 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 694 TRUE 1229 FALSE NA LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72524447,chr17:72524467,chr17:72524449 chr17:72684492,chr17:72684494,chr17:72684491 NA NA chr17:70520587,chr17:70520607,chr17:70520589 chr17:70680631,chr17:70680633,chr17:70680630 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[5477] 28 86 28 63.37 ONLY_REF_SPLICE YES_LDAS 0.9643 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29584 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22661205:+ chr12:22778009-22843599:+ chr12:22814139:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22618485:+ chr12:22562171-22771802:+ chr12:22771419:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 24 27 24 4.8 ONLY_REF_SPLICE YES_LDAS 0.304 GT 1.5546 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 29585 ETNK1::C2CD5-AS1 ENSG00000139163.16::ENSG00000250166.4 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1232 TRUE 478 ETNK1 ENSG00000139163.16 protein_coding + + chr12:22625075-22690665:+ chr12:22661205:+ chr12:22778009-22843599:+ chr12:22814139:+ C2CD5-AS1 ENSG00000250166.4 lncRNA + + chr12:22409237-22618868:+ chr12:22601349:+ chr12:22562171-22771802:+ chr12:22754283:+ chr12:22664821,chr12:22664820 chr12:22594257,chr12:22594253 NA NA chr12:22817755,chr12:22817754 chr12:22747191,chr12:22747187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 21 61 21 15.33 INCL_NON_REF_SPLICE YES_LDAS 0.3834 GT 1.5546 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ethanolamine kinase 1 1 Yes aCML, CMML, SM-AHD, HES leukaemia_lymphoma TSG missense FALSE NA NA NA NA NA NA NA NA NA 29586 PCNX2::ASXL3 ENSG00000135749.20::ENSG00000141431.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 704 FALSE NA FALSE NA PCNX2 ENSG00000135749.20 protein_coding - - chr1:232983435-233295725:- chr1:233160283:- chr1:233119181-233431471:- chr1:233296029:- ASXL3 ENSG00000141431.14 protein_coding + + chr18:33578219-33751195:+ chr18:33607594:+ chr18:31158183-31331159:+ chr18:31187558:+ chr1:233160141,chr1:233160144 chr18:33602376,chr18:33602373 NA NA chr1:233295887,chr1:233295890 chr18:31182340,chr18:31182337 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pecanex_C|1619-1844|8.4e-120 HARE-HTH-PARTIAL|~55-81|1.9e-23^ASXH|152-171|2.2^ASXH|241-361|8.9e-33^K_channel_TID|1056-1095|0.0007^PHD_3|2205-2247|1.1e-22^PHD|2218-2239|0.0045 ["CCLE_StarF2019"] 17 10 17 10 ONLY_REF_SPLICE YES_LDAS 0.2849 GT 1.5628 AG 1.6402 ENST00000258229.14 1-3517 ENST00000696964.1 55-6750 chr1|-|[0]233160283-233160433[0]|[2]233161271-233161363[0]|[2]233177802-233177898[2]|[1]233179066-233179175[0]|[2]233198939-233199030[1]|[0]233200154-233200264[1]|[0]233208518-233208689[0]|[2]233217899-233217931[0]|[2]233218031-233218184[2]|[1]233227226-233227371[0]|[2]233236845-233236980[2]|[1]233250739-233250832[1]|[0]233252354-233252499[2]|[1]233252641-233252788[1]|[0]233258028-233259344[1]|[0]233261285-233261321[0]|[2]233262045-233262165[2]|[1]233262958-233263163[0]|[2]233295326-233295478[0]<==>chr18|+|[0]33607594-33607676[1]|[2]33641821-33641823[1]|[2]33644894-33645002[2]|[0]33646245-33646353[0]|[1]33661616-33661737[2]|[0]33670673-33670790[0]|[1]33671747-33671866[0]|[1]33683405-33683568[2]|[0]33731968-33732064[0]|[1]33734310-33734415[1]|[2]33738487-33740443[2]|[0]33742888-33746595[2] atggtgtcccaggtgctgcagctgctccggcagggcgtgtgggccgcgctcaccgggggctggtaccacgacccggagcagagcaagttcaccaacagctgccacctctacctgtggctgttcctcctgctgctgcccctggccctgcacctggcttttcctccaaatgcgatcattgtatttttctactgcagtgcagtgactatattcttcacaataatcaaactggtcagttatcgcctacacctcatgtttgacaaaggagaagtaattcagcaaaagccctccagaaaggaagaaaagccaaataaagacaaggaggccaaaggtgaacacataactaatcacagaaatccaagcaataataggcagattcacaatggcaaaaaggaagaggccagtcgaaacctctccacgcctcccctccgctgcagctccagagggcaaagcataacctctcatcactcttctgggccattggagttgtcagcacaggaaactgtagaagatctcaaaggtgtcattctattagaagaccatcccatagcaccagtgtcatctacctcacctggtatcaaagtggaaagcttacctgcgtctcaagcacacatgctggaaaccacgaccaagtcagtaatacctgtaaaaccagttgccacagaaactctcatcaatggtaaaggaaaggaaagaggaggcaaggggcagcctcctttgcgccacagatccgagggtggcttagtggataagggacccttgaagaagttgccccacctgtctttgtctcagtatgacttactagaaacagacgtttctttccagccgtgggggagtgagaattcagtcctgattccagaacctgtcagttgtccccggggctccataagggaacgggtacaaagcaagtcacctcaggacagcctgagcagcagctgccctcaatgtgacaccatcgtggccaagcctgtggaggagccagcagacacatcctgtcaggtagatacctcctgccagggggacctgcccttgcaccaggaagtggactcctcagatagtgaggtagctgttactctcatcgatacttctcaacccggagacccactgagtctacatgagcccataaaaattgttatcacgatgagcagtaccccaaactccatgacagatttggaaagctccctccacctgagggtggttggcacagagaagaccagtgtaaagtctgacgctgagcccactaacccaggggcggccggttctccaaatgccgagcagatctcaattcctgtaatcaccctggacctgcctgagggtgggggaggaggtgttccctgtcccgaaggcaatggaagtgaaaggactccagagagactgaagacgagggtatccaccaatcagtgttctggctacggatctggggaggggggaaatgccatcaaggatcacagttcttcatcacgggaaccctgggaatcggtgtcccggcttacacctgatacaggctccgagtctaaggtggggaaggaaggccagactaaccttgacccatcgtcttgtaagtccagccatgaaaagaggcatgcccgggtgctcagtgtggacagtgggacagatgtcttcttgagtaaaagttctgcagaaattgttaacgatacagagaaaacaatgccaacttccaaatctgacctagaggctaaggaaggacaaatgccaaatgagtccaacttcctggaatttgtctccctgttagaatccattaatacttccaagatgacggcatccagtcaactgaatggctcagctgagcagaatgaagaaagtgggcttctccgagataactgttcccaggaaaaaaaggaggaaatcctggaaaatgaaaagcccagtggacacagttctaagcaaggaaaaccagatttgcaaagtcaagaccatactagcaccggccccgcatgcactcagcctgccaagaccacagccttttttcagggcaatagacaaagacagataatctacagggtaacttcccaacaagatagttctgtcttgcaagtcatcagtgggcctgaaacatctgtacaagaagagatatctgtggatgctatgcatgtcttcattgatgaacatggggaaattagatcctgttatttaaaatctggaaatcagaaagaaggccctttacagcctctaccatcaaataatgactgtctctctcaggctcgagagatgcaggtcagctcctccagtaccacaacttctgagagtcaagatccgtcttctggggaccctgccgtcagtgcccttcagcaacagctgttactgatggtggctcgcaggacccagtcggaaaccccacggcatgtgagtcaggatctggaagcctcgtcatgttcttcaacacaaggaaaatttaaccgagagcagttttacaaatttatcattttccctggcaagtggattaaagtctggtatgatcgactgaccttgctggcattacttgatcgaactgaagacatcaaggagaatgtactggcgattttactcattgtcctggtttccctccttggatttctgaccttgagccaaggcttttgcaaagatatgtgggtgctcctcttctgcctcgtcatggccagctgccagtactccctgctaaagagtgttcagcctgaccccgcctcaccaatacacggacacaaccaaatcataacatatagcagaccaatctatttttgtgtgctgtgtggccttattttgcttcttgatacaggggccaaagccaggcaccctcccagttacgttgtgtatggcctgaagctcttctctccagtgtttctacaatcagctagggactacttaatagtatttttatattgcttccctgctatttccctccttgggctcttcccgcaaatcaacactttctgcacttatcttttggagcaaattgacatgctgttttttggtggttctgctgtgtctgggataacctcggctgtttacagtgtggcccggagcgtcttggctgccgccctgctccacgcagtctgcttcagtgcagtgaaggaaccgtggagcatgcaacacatcccggcactgttttcggccttctgtggcctcttggtcgccctttcttaccatctgagccgtcagagcagtgacccatctgtactcatgtccttcatccaatgcaggctgtttcctaaatttttacatcaaaatctggcagagtcagctgctgaccctctccccaagaagatgaaagattcagtgacggatgtcttaaaatgggatctcatcgtctgcgcagtggttgctgtcctctcatttgcagtcagcgccagcactgtattcctgtcattgcgaccatttctcagcatcgtgctgtttgccttggctggagccgtggggtttgtaacacattacgtgctccctcagctccgcaagcatcatccctggatgtggatttcacaccccattctcaaaaacaaagagtatcatcaacgggaagtgagagGCACTAGAAAAACACCCCAACTCACCAATGACAGCAAAGCAGATATTGGAAGTCATTCAGAAAGAAGGGTTAAAAGAAACAAGAAATGGAACCTCTCCATTAGCCTGTCTGAATGCAATGCTTCACACTAACACTCGAATAGGGGATGGAACATTCTTCAAAATCCCTGGAAAGTCAGGCCTCTATGCTCTCAAAAAAGAGGAGTCGTCATGCCCAGCAGATGGCACGTTGGATTTAGTCTGTGAATCTGAATTGGATGGTACAGATATGGCCGAGGCAAATGCCCATGGAGAAGAAAATGGAGTTTGTTCGAAGCAGGTAACTGATGAAGCATCTTCCACTCGAGATTCAAGCCTTACTAACACAGCAGTGCAAAGCAAGTTAGTGTCTTCCTTCCAGCAGCACACCAAAAAGGCTCTTAAACAGGCTTTGAGGCAGCAGCAGAAAAGAAGAAATGGAGTCTCAATGATGGTAAACAAGACTGTTCCTCGTGTTGTTTTGACACCATTAAAGGTGTCTGATGAGCAGTCGGATTCGCCTTCAGGATCTGAATCTAAAAATGGTGAAGCAGACAGTTCAGATAAAGAAATGAAACATGGGCAAAAATCTCCCACTGGAAAACAAACAAGTCAGCACTTAAAACGATTAAAAAAGTCTGGTTTAGGGCACTTGAAATGGACCAAAGCTGAGGACATTGACATAGAAACCCCAGGATCTATTCTTGTCAACACTAACTTGAGGGCATTAATAAATAAACATACGTTTGCTTCCTTACCTCAGCATTTTCAACAATACCTCCTGCTTTTGCTCCCAGAAGTGGATAGGCAGATGGGAAGTGATGGAATTTTACGCCTCAGTACTTCAGCTCTAAATAATGAATTCTTTGCATATGCAGCACAAGGGTGGAAACAGCGACTGGCAGAAGGAGAGTTTACCCCAGAAATGCAGTTGCGGATAAGGCAAGAAATTGAGAAGGAAAAGAAAACAGAACCTTGGAAAGAAAAATTCTTTGAGAGGTTTTATGGAGAAAAGCTGGGCATGTCAAGAGAGGAATCTGTGAAGCTCACTACTGGACCAAACAACGCTGGAGCTCAAAGTAGTTCTTCATGTGGGACTTCTGGCCTTCCAGTTTCTGCACAGACAGCCTTGGCAGAACAACAGCCAAAAAGCATGAAAAGCCCAGCTTCTCCAGAGCCTGGTTTCTGTGCTACTCTTTGCCCTATGGTAGAAATTCCACCTAAAGATATAATGGCAGAATTGGAGTCAGAGGATATCTTGATCCCTGAAGAATCTGTAATTCAGGAGGAAATTGCAGAAGAGGTAGAGACTAGTATCTGTGAATGCCAGGATGAAAATCATAAGACAATACCTGAATTTTCTGAGGAGGCTGAAAGTCTAACCAATTCTCATGAAGAACCCCAAATAGCACCTCCTGAAGATAACTTGGAATCCTGTGTTATGATGAATGATGTTTTAGAAACTTTGCCTCATATTGAAGTTAAGATAGAAGGGAAGTCAGAATCACCCCAGGAAGAAATGACAGTTGTTATCGATCAGTTAGAAGTCTGTGACTCTCTTATTCCTTCCACTTCATCTATGACTCATGTCAGTGACACAGAACATAAGGAGTCAGAAACTGCAGTAGAGACCAGTACCCCCAAAATAAAAACAGGGTCATCTTCTCTAGAAGGCCAGTTTCCAAATGAAGGAATTGCTATAGATATGGAGCTACAGAGTGACCCTGAAGAACAGCTTTCAGAAAATGCCTGCATCTCTGAAACGTCCTTTTCTTCTGAGAGCCCAGAGGGAGCCTGTACCAGCCTGCCTTCTCCAGGAGGGGAAACACAGTCCACATCAGAAGAATCATGTACTCCAGCCTCCCTTGAGACAACATTTTGTTCTGAGGTATCTAGCACTGAAAATACAGACAAATACAACCAGAGAAATTCCACTGATGAAAACTTTCATGCATCTTTGATGTCAGAAATATCTCCAATATCCACTTCACCTGAAATATCAGAAGCATCTCTTATGTCCAACTTACCATTAACATCTGAAGCATCACCAGTATCCAACTTACCTTTAACATCAGAAACCTCACCGATGTCTGACTTACCTTTAACATCAGAAACTTCTTCAGTGTCTTCCATGCTTCTCACCTCTGAGACCACTTTTGTATCCAGTTTGCCACTTCCTTCAGAAACATCTCCAATTTCCAACTCTTCCATAAATGAGAGAATGGCACATCAGCAAAGAAAGTCACCTTCTGTATCTGAAGAGCCACTCTCCCCGCAGAAAGATGAGTCTTCCGCCACTGCCAAACCTCTGGGAGAGAACCTTACCTCCCAGCAGAAGAATCTGTCTAATACTCCCGAACCCATCATAATGAGTTCTTCTTCCATTGCTCCTGAAGCATTTCCGTCTGAAGATTTGCACAATAAGACCCTGAGTCAGCAAACCTGTAAATCACATGTTGACACTGAGAAGCCCTACCCTGCTTCAATTCCAGAACTTGCTTCTACTGAAATGATAAAAGTTAAAAATCATAGCGTCCTGCAAAGAACAGAAAAAAAAGTGTTACCTTCACCATTGGAATTATCTGTCTTTTCTGAAGGGACAGATAATAAGGGAAATGAGCTTCCATCTGCTAAATTACAGGACAAGCAATATATCTCATCAGTGGATAAGGCTCCATTTTCAGAAGGCTCTAGAAATAAAACACATAAGCAAGGGAGTACACAGAGTCGGTTAGAAACCTCACATACTTCCAAGTCATCAGAGCCCTCCAAGTCACCTGATGGGATAAGAAATGAAAGTAGAGATTCAGAGATATCAAAGAGAAAAACTGCAGAGCAACACAGCTTTGGAATCTGTAAGGAAAAGAGAGCTAGGATAGAAGATGATCAGTCAACCCGGAACATATCATCTAGCAGCCCACCTGAGAAAGAACAGCCTCCCAGAGAGGAACCAAGGGTTCCCCCTCTCAAGATTCAGCTTTCCAAAATTGGGCCACCTTTTATAATCAAGAGCCAACCAGTCTCCAAACCTGAGTCTCGAGCATCCACTAGCACATCTGTCAGTGGCGGGAGGAACACAGGAGCCAGGACCCTCGCAGATATCAAGGCCCGGGCCCAACAAGCTCGGGCCCAGCGAGAGGCTGCTGCAGCTGCTGCTGTGGCTGCTGCAGCGAGCATTGTCTCTGGAGCCATGGGAAGTCCAGGAGAGGGTGGAAAGACGAGAACTCTGGCACACATCAAAGAGCAGACAAAGGCTAAGCTCTTTGCAAAGCATCAAGCTCGAGCCCATCTCTTCCAGACCTCTAAAGAGACCCGGTTGCCTCCTCCGCTCAGCTCAAAGGAAGGGCCTCCAAACTTAGAAGTCTCTTCTACCCCTGAAACAAAAATGGAAGGTTCGACTGGTGTCATTATTGTCAATCCAAACTGTAGATCTCCTAGCAACAAGTCTGCCCACCTCCGGGAGACCACCACTGTACTACAGCAGTCTCTTAACCCAAGTAAACTTCCAGAAACTGCCACTGACTTATCTGTGCATAGTTCTGATGAAAACATACCTGTGTCACATTTATCTGAGAAAATTGTTTCATCTACCTCTTCTGAAAATAGCAGTGTGCCCATGCTTTTTAATAAAAATTCTGTCCCTGTATCTGTTTGCAGCACTGCTATATCGGGAGCAATTAAAGAACATCCCTTTGTGAGTTCTGTTGATAAATCCTCTGTCCTAATGTCTGTTGACAGTGCAAACACTACAATTTCTGCTTGTAATATAAGCATGTTAAAAACCATCCAGGGAACTGACACTCCATGCATAGCCATTATACCAAAATGTATTGAAAGCACTCCCATTTCAGCCACTACAGAGGGCTCCAGCATATCAAGCTCCATGGATGATAAGCAGTTACTAATATCAAGCAGCAGTGCTAGTAACTTAGTCTCCACTCAGTACACCTCTGTGCCAACTCCCTCCATCGGAAACAATTTGCCAAACCTCTCCACTAGCTCTGTCTTGATTCCCCCAATGGGAATTAACAACAGATTTCCTTCTGAGAAGATAGCCATACCTGGGAGTGAAGAACAGGCCACTGTATCCATGGGTACCACTGTGAGAGCAGCCCTCAGCTGCAGTGATTCTGTAGCGGTCACAGACTCTCTGGTTGCACACCCGACCGTCGCAATGTTTACTGGAAACATGCTGACAATAAACTCTTATGATAGTCCTCCCAAGTTAAGTGCTGAAAGCTTGGACAAAAATTCAGGGCCTCGAAACAGGGCAGATAATTCTGGAAAACCTCAGCAACCACCAGGGGGCTTTGCACCAGCAGCCATAAACCGATCAATTCCGTGTAAAGTCATCGTTGACCACAGCACCACGCTGACCTCCAGTTTGTCTCTGACTGTCTCCGTTGAAAGCTCAGAAGCCAGCTTGGACCTGCAGGGCAGACCAGTGAGGACAGAGGCATCCGTACAGCCCGTGGCGTGTCCTCAGGTGTCTGTGATTAGCAGGCCTGAGCCAGTTGCCAACGAAGGTATAGATCACAGTTCCACTTTCATTGCTGCTTCGGCAGCAAAACAAGACAGTAAAACATTGCCGGCCACCTGCACAAGTCTCCGAGAATTACCCCTTGTTCCAGATAAATTAAATGAGCCGACTGCTCCCAGTCATAACTTTGCTGAGCAGGCACGTGGCCCAGCTCCTTTCAAAAGTGAAGCAGACACAACCTGTAGCAATCAGTATAACCCAAGTAACCGGATTTGCTGGAATGATGATGGGATGAGGAGCACAGGACAGCCTCTGGTTACTCACTCGGGTTCAAGTAAACAAAAAGAATATCTAGAGCAAAGCTGTCCAAAGGCTATCAAAACTGAACATGCCAACTACTTGAACGTGTCAGAACTTCATCCCAGGAATCTTGTAACAAATGTTGCTCTTCCTGTGAAATCTGAACTTCACGAAGCAGACAAGGGCTTTAGAATGGACACTGAAGACTTCCCTGGCCCTGAGCTGCCTCCTCCGGCTGCAGAGGGAGCCTCTAGTGTACAACAAACACAGAACATGAAAGCTTCCACCTCAAGTCCCATGGAAGAGGCTATTTCCTTGGCTACCGATGCCCTGAAGAGAGTCCCTGGTGCAGGGAGCTCAGGCTGTCGTCTGTCCTCTGTGGAGGCTAACAATCCGCTGGTGACGCAGTTACTACAGGGCAACCTGCCTTTGGAAAAAGTGTTGCCACAGCCCAGATTGGGAGCCAAGCTTGAAATCAACAGGCTTCCATTGCCTCTTCAAACTACCTCAGTGGGTAAAACAGCACCAGAGAGAAACGTTGAAATTCCGCCCAGCTCTCCAAATCCAGATGGTAAGGGCTACTTGGCAGGGACTCTGGCACCACTCCAAATGAGAAAGCGAGAAAACCACCCCAAAAAGAGAGTAGCTAGGACTGTAGGAGAACACACTCAAGTTAAATGTGAACCAGGAAAATTGTTGGTGGAGCCAGATGTTAAAGGGGTGCCTTGTGTCATCAGTTCCGGCATCAGTCAGCTAGGACACAGCCAGCCATTTAAGCAAGAATGGCTAAACAAGCACTCCATGCAGAACAGAATTGTTCACAGCCCTGAGGTCAAACAGCAAAAGCGGCTGCTCCCCTCGTGTAGCTTCCAGCAGAACCTATTTCATGTTGACAAGAATGGCGGCTTCCACACTGACGCTGGTACCTCACACAGACAGCAGTTTTACCAAATGCCTGTGGCTGCCAGGGGCCCCATTCCTACTGCAGCTCTGTTACAGGCCTCTTCCAAGACCCCAGTGGGGTGTAATGCATTTGCCTTCAACAGGCATCTTGAACAGAAGGGATTGGGAGAGGTTAGTCTTTCCTCAGCACCTCACCAGCTAAGGTTAGCCAACATGTTATCCCCCAATATGCCCATGAAAGAAGGTGATGAGGTGGGAGGCACTGCACACACAATGCCAAACAAAGCACTAGTACATCCGCCGCCGCCACCGCCTCCCCCTCCCCCTCCACCCTTGGCTTTGCCCCCGCCTCCCCCCCCACCACCTCCGCTACCTCCACCTCTCCCTAATGCAGAAGTCCCATCTGATCAAAAACAACCTCCAGTTACCATGGAAACCACTAAGAGACTTAGTTGGCCACAGTCCACGGGCATATGTAGCAATATAAAATCGGAACCTCTTTCTTTTGAGGAAGGTTTAAGCAGCAGCTGTGAACTGGGCATGAAACAAGTTTCCTATGACCAGAATGAAATGAAAGAACAGTTAAAAGCATTCGCGCTAAAAAGTGCAGATTTCTCTTCCTATTTGCTTTCTGAGCCACAAAAGCCTTTTACCCAATTAGCTGCTCAGAAAATGCAGGTGCAGCAACAACAGCAGCTCTGTGGAAATTATCCAACAATACACTTTGGTAGCACGAGTTTCAAAAGGGCAGCATCTGCAATTGAAAAGTCCATTGGGATTTTGGGAAGTGGCTCCAATCCTGCCACAGGCTTGTCTGGTCAGAACGCTCAGATGCCCGTTCAGAACTTTGCCGACAGCAGCAATGCAGATGAATTGGAACTGAAATGCTCTTGCCGGCTGAAAGCCATGATTGTGTGCAAAGGCTGTGGGGCCTTCTGCCATGACGACTGCATAGGTCCTTCAAAACTTTGTGTAGCATGCCTGGTTGTACGATAA MVSQVLQLLRQGVWAALTGGWYHDPEQSKFTNSCHLYLWLFLLLLPLALHLAFPPNAIIVFFYCSAVTIFFTIIKLVSYRLHLMFDKGEVIQQKPSRKEEKPNKDKEAKGEHITNHRNPSNNRQIHNGKKEEASRNLSTPPLRCSSRGQSITSHHSSGPLELSAQETVEDLKGVILLEDHPIAPVSSTSPGIKVESLPASQAHMLETTTKSVIPVKPVATETLINGKGKERGGKGQPPLRHRSEGGLVDKGPLKKLPHLSLSQYDLLETDVSFQPWGSENSVLIPEPVSCPRGSIRERVQSKSPQDSLSSSCPQCDTIVAKPVEEPADTSCQVDTSCQGDLPLHQEVDSSDSEVAVTLIDTSQPGDPLSLHEPIKIVITMSSTPNSMTDLESSLHLRVVGTEKTSVKSDAEPTNPGAAGSPNAEQISIPVITLDLPEGGGGGVPCPEGNGSERTPERLKTRVSTNQCSGYGSGEGGNAIKDHSSSSREPWESVSRLTPDTGSESKVGKEGQTNLDPSSCKSSHEKRHARVLSVDSGTDVFLSKSSAEIVNDTEKTMPTSKSDLEAKEGQMPNESNFLEFVSLLESINTSKMTASSQLNGSAEQNEESGLLRDNCSQEKKEEILENEKPSGHSSKQGKPDLQSQDHTSTGPACTQPAKTTAFFQGNRQRQIIYRVTSQQDSSVLQVISGPETSVQEEISVDAMHVFIDEHGEIRSCYLKSGNQKEGPLQPLPSNNDCLSQAREMQVSSSSTTTSESQDPSSGDPAVSALQQQLLLMVARRTQSETPRHVSQDLEASSCSSTQGKFNREQFYKFIIFPGKWIKVWYDRLTLLALLDRTEDIKENVLAILLIVLVSLLGFLTLSQGFCKDMWVLLFCLVMASCQYSLLKSVQPDPASPIHGHNQIITYSRPIYFCVLCGLILLLDTGAKARHPPSYVVYGLKLFSPVFLQSARDYLIVFLYCFPAISLLGLFPQINTFCTYLLEQIDMLFFGGSAVSGITSAVYSVARSVLAAALLHAVCFSAVKEPWSMQHIPALFSAFCGLLVALSYHLSRQSSDPSVLMSFIQCRLFPKFLHQNLAESAADPLPKKMKDSVTDVLKWDLIVCAVVAVLSFAVSASTVFLSLRPFLSIVLFALAGAVGFVTHYVLPQLRKHHPWMWISHPILKNKEYHQREVRGTRKTPQLTNDSKADIGSHSERRVKRNKKWNLSISLSECNASH*HSNRGWNILQNPWKVRPLCSQKRGVVMPSRWHVGFSL*I*IGWYRYGRGKCPWRRKWSLFEAGN**SIFHSRFKPY*HSSAKQVSVFLPAAHQKGS*TGFEAAAEKKKWSLNDGKQDCSSCCFDTIKGV**AVGFAFRI*I*KW*SRQFR*RNETWAKISHWKTNKSALKTIKKVWFRALEMDQS*GH*HRNPRIYSCQH*LEGINK*TYVCFLTSAFSTIPPAFAPRSG*ADGK*WNFTPQYFSSK**ILCICSTRVETATGRRRVYPRNAVADKARN*EGKENRTLERKIL*EVLWRKAGHVKRGICEAHYWTKQRWSSK*FFMWDFWPSSFCTDSLGRTTAKKHEKPSFSRAWFLCYSLPYGRNST*RYNGRIGVRGYLDP*RICNSGGNCRRGRD*YL*MPG*KS*DNT*IF*GG*KSNQFS*RTPNSTS*R*LGILCYDE*CFRNFASY*S*DRREVRITPGRNDSCYRSVRSL*LSYSFHFIYDSCQ*HRT*GVRNCSRDQYPQNKNRVIFSRRPVSK*RNCYRYGATE*P*RTAFRKCLHL*NVLFF*EPRGSLYQPAFSRRGNTVHIRRIMYSSLP*DNILF*GI*H*KYRQIQPEKFH**KLSCIFDVRNISNIHFT*NIRSISYVQLTINI*SITSIQLTFNIRNLTDV*LTFNIRNFFSVFHASHL*DHFCIQFATSFRNISNFQLFHK*ENGTSAKKVTFCI*RATLPAER*VFRHCQTSGREPYLPAEESV*YSRTHHNEFFFHCS*SISV*RFAQ*DPESANL*ITC*H*EALPCFNSRTCFY*NDKS*KS*RPAKNRKKSVTFTIGIICLF*RDR**GK*ASIC*ITGQAIYLISG*GSIFRRL*K*NT*AREYTESVRNLTYFQVIRALQVT*WDKK*K*RFRDIKEKNCRATQLWNL*GKES*DRR*SVNPEHII*QPT*ERTASQRGTKGSPSQDSAFQNWATFYNQEPTSLQT*VSSIH*HICQWREEHRSQDPRRYQGPGPTSSGPARGCCSCCCGCCSEHCLWSHGKSRRGWKDENSGTHQRADKG*ALCKASSSSPSLPDL*RDPVASSAQLKGRASKLRSLFYP*NKNGRFDWCHYCQSKL*IS*QQVCPPPGDHHCTTAVS*PK*TSRNCH*LICA*F**KHTCVTFI*ENCFIYLF*K*QCAHAF**KFCPCICLQHCYIGSN*RTSLCEFC**ILCPNVC*QCKHYNFCL*YKHVKNHPGN*HSMHSHYTKMY*KHSHFSHYRGLQHIKLHG**AVTNIKQQC**LSLHSVHLCANSLHRKQFAKPLH*LCLDSPNGN*QQISF*EDSHTWE*RTGHCIHGYHCESSPQLQ*FCSGHRLSGCTPDRRNVYWKHADNKLL**SSQVKC*KLGQKFRASKQGR*FWKTSATTRGLCTSSHKPINSV*SHR*PQHHADLQFVSDCLR*KLRSQLGPAGQTSEDRGIRTARGVSSGVCD*QA*ASCQRRYRSQFHFHCCFGSKTRQ*NIAGHLHKSPRITPCSR*IK*ADCSQS*LC*AGTWPSSFQK*SRHNL*QSV*PK*PDLLE**WDEEHRTASGYSLGFK*TKRISRAKLSKGYQN*TCQLLERVRTSSQESCNKCCSSCEI*TSRSRQGL*NGH*RLPWP*AASSGCRGSL*CTTNTEHESFHLKSHGRGYFLGYRCPEESPWCRELRLSSVLCGG*QSAGDAVTTGQPAFGKSVATAQIGSQA*NQQASIASSNYLSG*NSTREKR*NSAQLSKSRW*GLLGRDSGTTPNEKARKPPQKESS*DCRRTHSS*M*TRKIVGGARC*RGALCHQFRHQSARTQPAI*ARMAKQALHAEQNCSQP*GQTAKAAAPLV*LPAEPISC*QEWRLPH*RWYLTQTAVLPNACGCQGPHSYCSSVTGLFQDPSGV*CICLQQAS*TEGIGRG*SFLSTSPAKVSQHVIPQYAHERR**GGRHCTHNAKQSTSTSAAATASPSPSTLGFAPASPPTTSATSTSP*CRSPI*SKTTSSYHGNH*ET*LATVHGHM*QYKIGTSFF*GRFKQQL*TGHETSFL*PE*NERTVKSIRAKKCRFLFLFAF*ATKAFYPISCSENAGAATTAALWKLSNNTLW*HEFQKGSICN*KVHWDFGKWLQSCHRLVWSERSDARSELCRQQQCR*IGTEMLLPAESHDCVQRLWGLLP*RLHRSFKTLCSMPGCTI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29587 LGR4::LIN7C ENSG00000205213.14::ENSG00000148943.12 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 709 FALSE NA FALSE NA LGR4 ENSG00000205213.14 protein_coding - - chr11:27365961-27472790:- chr11:27412789:- chr11:27387508-27494337:- chr11:27434336:- LIN7C ENSG00000148943.12 protein_coding - - chr11:27494418-27506769:- chr11:27501920:- chr11:27515965-27528316:- chr11:27523467:- chr11:27401224,chr11:27401232 chr11:27503398,chr11:27503403 NA NA chr11:27422771,chr11:27422779 chr11:27524945,chr11:27524950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRRNT|29-55|4.2e-11^LRR_1|60-79|0.00092^LRR_9|60-147|2.6e-10^LRR_6|60-70|0.0063^LRR_12|60-83|0.00095^LRR_8|61-117|1.1e-16^LRR_4|62-97|2e-07^LRR_5|70-155|6.8e-10^LRR_6|82-95|0.067^LRR_4|83-120|1.5e-08^LRR_1|83-104|0.00085^LRR_12|83-94|0.27^LRR_8|106-158|9.6e-12^LRR_4|106-147|1.2e-08^LRR_1|106-128|6.9e-05^LRR_6|107-117|3.9^LRRNT|113-122|0.068^LRR_6|128-142|0.011^LRR_4|129-156|2.6e-05^LRR_1|131-152|0.023^LRR_12|131-141|0.36 L27-PARTIAL|~38-67|9.5e-23^PDZ_6-PARTIAL|~38-44|1.9^His_Phos_2|57-94|2.8e-05^PDZ|94-171|1.7e-24^PDZ_2|113-164|5.9e-06^PDZ_6|119-172|2.9e-14^L27|150-161|0.52 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.02Mb];LOCAL_REARRANGEMENT:-:[21801] 16 5 16 5 ONLY_REF_SPLICE YES_LDAS 0.2217 GT 1.8892 AG 1.7819 ENST00000480977.2 1-257 ENST00000278193.7 38-594 chr11|-|[1]27412789-27412860[2]|[1]27472118-27472302[0]<==>chr11|-|[2]27498649-27498804[0]|[2]27499359-27499568[0]|[2]27501495-27501566[0]|[2]27501802-27501920[1] atgccgggcccgctagggctgctctgcttcctcgccctggggctgctcggctcggccgggcccagcggcgcggcgccgcctctctgcgcggcgccctgcagctgcgacggcgaccgtcgggtggactgctccgggaaggggctgacggccgtgcccgaggggctcagcgccttcacccaagcgctggatatcagtatgaacaacattactcagttgccagaagatgcatttaagaactttccttttctagaagagctATATTTGTAGAGCAATTGAATTATTGGAAAAACTACAAAGGAGTGGAGAAGTACCACCACAGAAACTTCAGGCTTTGCAAAGAGTCCTTCAAAGTGAATTCTGCAATGCTGTGAGAGAGGTATATGAACATGTCTATGAGACTGTGGACATCAGTAGCAGTCCTGAAGTGAGAGCGAACGCTACTGCAAAGGCTACTGTTGCTGCATTTGCTGCCAGTGAAGGACATTCTCATCCTCGAGTTGTTGAGCTACCAAAAACAGAAGAGGGCCTTGGATTCAATATTATGGGAGGCAAAGAACAAAACTCTCCAATCTATATATCCCGAATAATTCCAGGTGGAATTGCTGATAGACATGGGGGCCTCAAACGTGGAGATCAACTCCTCTCTGTTAATGGAGTGAGTGTTGAAGGAGAACATCATGAAAAAGCTGTAGAACTGCTGAAAGCCGCACAAGGAAAGGTTAAATTAGTGGTACGATACACACCCAAAGTCTTAGAAGAAATGGAGTCGCGCTTTGAAAAAATGAGATCAGCAAAACGCAGGCAACAGACCTAA MPGPLGLLCFLALGLLGSAGPSGAAPPLCAAPCSCDGDRRVDCSGKGLTAVPEGLSAFTQALDISMNNITQLPEDAFKNFPFLEELYL*SN*IIGKTTKEWRSTTTETSGFAKSPSK*ILQCCERGI*TCL*DCGHQ*QS*SESERYCKGYCCCICCQ*RTFSSSSC*ATKNRRGPWIQYYGRQRTKLSNLYIPNNSRWNC**TWGPQTWRSTPLC*WSEC*RRTS*KSCRTAESRTRKG*ISGTIHTQSLRRNGVAL*KNEISKTQATDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29588 PEAK1::LINGO1 ENSG00000173517.11::ENSG00000169783.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 702 TRUE 1234 TRUE 480 PEAK1 ENSG00000173517.11 protein_coding - - chr15:77100656-77420144:- chr15:77365163:- chr15:77392998-77712486:- chr15:77657505:- LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77615900:- chr15:77905369-78113242:- chr15:77908242:- chr15:77362063,chr15:77362065 chr15:77659138,chr15:77659137 NA NA chr15:77654405,chr15:77654407 chr15:77951480,chr15:77951479 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.19Mb] 15 26 15 24 ONLY_REF_SPLICE YES_LDAS 0.4116 GT 1.5546 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Pseudopodium-enriched atypical kinase 1 Other NKF3 Q9H792 FALSE NA NA NA NA NA NA TRUE Pancreas no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lower grade glioma CENTRAL_NERVOUS_SYSTEM no_match 77133005 FALSE 77690901 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29590 ZC3H3::ENSG00000254812 ENSG00000014164.7::ENSG00000254812.3 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZC3H3 ENSG00000014164.7 protein_coding - - chr8:143437659-143541447:- chr8:143507746:- chr8:144519829-144623617:- chr8:144589916:- ENSG00000254812 ENSG00000254812.3 lncRNA - - chr8:143620586-143633756:- chr8:143620900:- chr8:144702756-144715926:- chr8:144703070:- chr8:143479007,chr8:143479245,chr8:143479254 chr8:143622651,chr8:143622748,chr8:143622749 NA NA chr8:144561177,chr8:144561415,chr8:144561424 chr8:144704821,chr8:144704918,chr8:144704919 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 10 12 10 ONLY_REF_SPLICE YES_LDAS 0.2322 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29591 LIN52::PAPLN ENSG00000205659.12::ENSG00000100767.17 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 706 FALSE NA FALSE NA LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73244644:+ chr14:73704205-73741348:+ chr14:73711352:+ chr14:74128092,chr14:74128093 chr14:73243764,chr14:73243762 NA NA chr14:74594795,chr14:74594796 chr14:73710472,chr14:73710470 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LIN52|14-108|6.8e-42 TSP1_ADAMTS-PARTIAL|~55-79|0.00012^TSP_1-PARTIAL|~55-79|6.8e-14^TSP1_spondin-PARTIAL|~55-79|1.3e-10^ADAMTS_CR_3|87-182|4.6e-14^ADAMTS_spacer1|185-298|3.9e-33^TSP1_ADAMTS|308-360|2.5e-16^TSP_1|311-360|8.4e-06^TSP1_spondin|311-360|6e-06^TSP1_CCN|311-360|0.00049^TSP1_ADAMTS|366-424|1.5e-17^TSP_1|369-424|1.6e-08^TSP1_spondin|369-393|0.0014^TSP1_CCN|369-386|0.0016^TSP1_CCN|424-448|0.00012^TSP1_ADAMTS|427-480|2.3e-15^TSP_1|430-480|3.1e-09^TSP1_spondin|430-450|0.0015^TSP1_ADAMTS|488-538|1.4e-10^TSP_1|490-538|9.5e-07^TSP1_spondin|491-538|0.00029^TSP1_CCN|491-509|0.023^TSP1_spondin|690-722|1.2^Kunitz_BPTI|753-805|5.5e-21^Papilin_u7|814-905|8.5e-47^Ig_3|914-978|1.2e-12^ig|915-981|2e-09^I-set|916-992|5.1e-13^C2-set_2|918-961|0.022^Ig_2|922-980|7.2e-09^Ig_5|924-992|0.00024^C1-set|940-953|6.1^V-set|947-988|8e-07^Izumo-Ig|962-978|0.17^V-set_CD47|966-993|0.61^I-set|1048-1129|1.1e-18^Ig_3|1049-1116|1.7e-18^V-set|1049-1081|0.0045^ig|1051-1126|1.7e-12^Ig_2|1055-1118|2.6e-13^C2-set_2|1055-1099|3.9e-06^Ig_5|1058-1127|0.00062^C1-set|1058-1094|0.0025^V-set|1081-1130|1.9e-07^Izumo-Ig|1094-1113|0.13^V-set_CD47|1106-1129|1^C2-set_2|1134-1187|0.047^Ig_3|1135-1204|5.4e-14^I-set|1136-1219|2e-15^Ig_2|1139-1219|2.2e-10^ig|1139-1205|2.7e-08^V-set|1139-1219|1.4e-07^C1-set|1145-1187|0.0039^Ig_5|1147-1208|0.023^V-set_CD47|1159-1220|0.00045^Izumo-Ig|1182-1207|0.24^Syndecan|1187-1202|0.00044^TSP1_spondin|1226-1245|1.7^PLAC|1235-1267|3.2e-13^TSP1_CCN|1242-1254|7.5 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.81Mb] 12 10 12 10 ONLY_REF_SPLICE YES_LDAS 0.2322 GT 1.6402 AG 1.8892 ENST00000555028.7 1-283 ENST00000554301.5 55-3837 chr14|+|[0]74084975-74084993[0]|[1]74091232-74091306[0]|[1]74095948-74095985[2]|[0]74097794-74097860[0]|[1]74101155-74101238[0]<==>chr14|+|[0]73244644-73244759[1]|[2]73245636-73245696[2]|[0]73246073-73246175[0]|[1]73249984-73250114[2]|[0]73250907-73251030[0]|[1]73251486-73251566[0]|[1]73251664-73251836[2]|[0]73252018-73252141[0]|[1]73252649-73252775[1]|[2]73253754-73253961[2]|[0]73254513-73254695[2]|[0]73254877-73255018[0]|[1]73258979-73259059[0]|[1]73259269-73259545[1]|[2]73260709-73260829[2]|[0]73261156-73261294[0]|[1]73262350-73262827[1]|[2]73263645-73263782[1]|[2]73264211-73264335[0]|[1]73264588-73264726[1]|[2]73265370-73265507[1]|[2]73266501-73266628[0]|[1]73266723-73266831[1]|[2]73268557-73268723[0]|[1]73272495-73272664[2] atggcgtctcccacagacgggacagatctggaagcatctttgctaagttttgaaaaacttgaccgtgcctcaccagatctttggccagaacaattaccaggtgttgctgaatttgcagcttccttcaaaagtcctattactagttctccacccaaatggatggctgagatagaacgtgatgacatcgacatgttgaaagaactggggagtctcaccacggctaatttgatggagaaggttcgaggcctacagaacctagcctatcagctggggctggatgagtGCTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAGGAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGCCCGGAGCCACCGCTCTTGTCGCACGGAGAGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGGAGTTCGACGGAGCGGAGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCGCCCCAAACAAGTGTGAACTGAACTGCATTCCCAAGGGGGAGAACTTCTACTACAAGCACAGGGAGGCTGTGGTTGATGGGACGCCCTGCGAGCCTGGCAAGAGGGATGTCTGTGTGGATGGCAGCTGCCGGGTTGTCGGCTGTGATCACGAGCTGGACTCGTCCAAGCAGGAGGACAAGTGTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTCGCAGGCACCTTTGACGCTAATGACCTCAGCCGAGGCTACAACCAGATCCTCATAGTTCCCATGGGTGCCACCAGCATCCTCATCGACGAGGCTGCTGCCAGCAGGAACTTCCTGGCTGTGAAGAATGTTCGTGGGGAATACTACCTCAATGGGCACTGGACCATCGAGGCGGCCCGGGCCCTGCCAGCAGCCAGCACCATCCTGCATTACGAGCGGGGTGCTGAGGGGGACCTGGCCCCTGAGCGACTCCATGCCCGGGGCCCCACCTCGGAGCCCCTGGTCATCGAGCTCATCAGCCAGGAGCCCAACCCCGGTGTGCACTATGAGTACCACCTGCCCCTGCGCCGCCCCAGCCCCGGCTTCAGCTGGAGCCACGGCTCATGGAGTGACTGCAGCGCGGAGTGTGGCGGAGGTCACCAGTCCCGCCTGGTGTTCTGCACCATCGACCATGAGGCCTACCCCGACCACATGTGCCAGCGCCAGCCACGGCCAGCTGACCGGCGTTCCTGCAATCTTCACCCTTGCCCGGAGACCAAGCGCTGGAAGGCAGGGCCATGGGCACCCTGCTCAGCCTCCTGTGGAGGAGGCTCCCAGTCCCGCTCCGTGTACTGCATCTCGTCTGACGGGGCCGGCATCCAGGAGGCCGTGGAGGAGGCTGAGTGTGCCGGGCTGCCTGGGAAGCCCCCTGCCATTCAGGCCTGTAACCTGCAGCGCTGTGCAGCCTGGAGCCCGGAGCCCTGGGGAGAGTGTTCTGTCAGTTGTGGCGTTGGCGTCCGGAAGCGGAGCGTTACTTGCCGGGGTGAAAGGGGTTCTTTGCTCCATACCGCAGCGTGCTCCTTGGAAGACCGGCCACCTCTGACTGAGCCCTGTGTGCATGAGGACTGCCCCCTCCTCAGTGACCAGGCCTGGCATGTTGGCACCTGGGGTCTATGCTCCAAGAGCTGCAGCTCGGGCACTCGGAGGCGACAGGTCATCTGTGCCATTGGGCCGCCCAGCCACTGCGGGAGCCTGCAGCACTCCAAGCCTGTGGATGTGGAGCCTTGTAACACGCAGCCCTGTCATCTCCCCCAGGAGGTCCCCAGCATGCAGGATGTGCACACCCCTGCCAGCAACCCCTGGATGCCGTTGGGCCCTCAGGAGTCCCCTGCCTCAGACTCCAGAGGCCAGTGGTGGGCAGCCCAGGAACACCCCTCAGCCAGGGGTGACCACAGGGGAGAACGAGGTGACCCCAGGGGCGACCAAGGCACCCACCTGTCAGCCCTGGGCCCCGCTCCCTCTCTGCAGCAGCCCCCATACCAGCAACCCCTGCGGTCGGGCTCAGGGCCCCACGACTGCAGACACAGTCCTCACGGGTGCTGCCCCGATGGCCACACGGCATCTCTCGGGCCTCAGTGGCAAGGCTGCCCTGGGGCCCCCTGTCAGCAGAGCAGGTACGGGTGCTGCCCTGACAGGGTATCTGTCGCTGAGGGGCCCCATCACGCTGGCTGCACAAAGTCGTATGGTGGTGACAGCACCGGGGGCATGCCCAGGTCAAGGGCAGTGGCTTCTACAGTCCACAACACCCACCAGCCCCAGGCCCAGCAGAATGAGCCCAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACGTGGCCACTGCAGCCGGTCCTCTTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATGCCTACCCCGTGCGGTGCCTGCTGCCCAGTGCCCATGGCTCTTGCGCAGACTGGGCTGCCCGCTGGTACTTCGTTGCCTCTGTGGGCCAATGTAACCGCTTCTGGTATGGCGGCTGCCATGGCAATGCCAATAACTTTGCCTCGGAGCAAGAGTGCATGAGCAGCTGCCAGGGATCTCTCCATGGGCCCCGTCGTCCCCAGCCTGGGGCTTCTGGAAGGAGCACCCACACGGATGGTGGCGGCAGCAGTCCTGCAGGCGAGCAGGAACCCAGCCAGCACAGGACAGGGGCCGCGGTGCAGAGAAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGACCAACAGCCTGGGCCAGGGGAGGCCCCCCACACCCAGGCCTTTGGAGAATGGCCATGGGGGCAGGAGCTTGGGTCCAGGGCCCCTGGACTGGGTGGAGATGCCGGATCACCAGCGCCACCCTTCCACAGCTCCTCCTACAGGATTAGCTTGGCAGGTGTGGAGCCCTCGTTGGTGCAGGCAGCCCTGGGGCAGTTGGTGCGGCTCTCCTGCTCAGACGACACTGCCCCGGAATCCCAGGCTGCCTGGCAGAAAGATGGCCAGCCCATCTCCTCTGACAGGCACAGGCTGCAGTTCGACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCACCCGGCCAGGCCGCGACTCCCAGAAGATCCAACTTCGCATCATAGGGGGTGACATGGCCGTGCTGTCTGAGGCTGAGCTGAGCCGCTTCCCTCAGCCCAGGGACCCAGCTCAGGACTTTGGCCAAGCGGGGGCTGCTGGGCCCCTGGGGGCCATCCCCTCTTCACACCCACAGCCTGCAAACAGGCTGCGTTTGGACCAGAACCAGCCCCGGGTGGTGGATGCCAGTCCAGGCCAGCGGATCCGGATGACCTGCCGTGCCGAAGGCTTCCCGCCCCCAGCCATCGAGTGGCAGAGAGATGGGCAGCCTGTCTCTTCTCCCAGACACCAGCTGCAGCCTGATGGCTCCCTGGTCATTAGCCGAGTGGCTGTAGAAGATGGCGGCTTCTACACCTGTGTCGCTTTCAATGGGCAGGACCGAGACCAGCGATGGGTCCAGCTCAGAGTTCTGGGGGAGCTGACAATCTCAGGACTGCCCCCTACTGTGACAGTGCCAGAGGGTGATACGGCCAGGCTATTGTGTGTGGTAGCAGGAGAAAGTGTGAACATCAGGTGGTCCAGGAACGGGCTACCTGTGCAGGCTGATGGCCACCGTGTCCACCAGTCCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAGTGCCTACCAGGGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAGCACCCACCGCCCAGCCCAGGGACCCTGGCAGGGACTGCGTCGACCAGCCAGAGCTGGCCAACTGTGATTTGATCCTGCAGGCCCAGCTTTGTGGCAATGAGTATTACTCCAGCTTCTGCTGTGCCAGCTGTTCACGTTTCCAGCCTCACGCTCAGCCCATCTGGCAGTAG MASPTDGTDLEASLLSFEKLDRASPDLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDECSQGEAAE*HLGTLEPVEPLQPDLWRGCQLPGAPLLLPEERWRLQLRGPRPEPPLLSHGELPRRRPGLPGRAVRGVRRSGVPGAAVSVAALLQRPKQV*TELHSQGGELLLQAQGGCG*WDALRAWQEGCLCGWQLPGCRL*SRAGLVQAGGQVSAVWG*RHDLLPRRRHL*R**PQPRLQPDPHSSHGCHQHPHRRGCCQQELPGCEECSWGILPQWALDHRGGPGPASSQHHPALRAGC*GGPGP*ATPCPGPHLGAPGHRAHQPGAQPRCAL*VPPAPAPPQPRLQLEPRLME*LQRGVWRRSPVPPGVLHHRP*GLPRPHVPAPATAS*PAFLQSSPLPGDQALEGRAMGTLLSLLWRRLPVPLRVLHLV*RGRHPGGRGGG*VCRAAWEAPCHSGL*PAALCSLEPGALGRVFCQLWRWRPEAERYLPG*KGFFAPYRSVLLGRPATSD*ALCA*GLPPPQ*PGLACWHLGSMLQELQLGHSEATGHLCHWAAQPLREPAALQACGCGAL*HAALSSPPGGPQHAGCAHPCQQPLDAVGPSGVPCLRLQRPVVGSPGTPLSQG*PQGRTR*PQGRPRHPPVSPGPRSLSAAAPIPATPAVGLRAPRLQTQSSRVLPRWPHGISRASVARLPWGPLSAEQVRVLP*QGICR*GAPSRWLHKVVWW*QHRGHAQVKGSGFYSPQHPPAPGPAE*AQ*VPGLPVWLLL*QRGHCSRSSWGRLCGPAQPCLPRAVPAAQCPWLLRRLGCPLVLRCLCGPM*PLLVWRLPWQCQ*LCLGARVHEQLPGISPWAPSSPAWGFWKEHPHGWWRQQSCRRAGTQPAQDRGRGAEKALAFWWSLAARPTAWARGGPPHPGLWRMAMGAGAWVQGPWTGWRCRITSATLPQLLLQD*LGRCGALVGAGSPGAVGAALLLRRHCPGIPGCLAERWPAHLL*QAQAAVRRIPDHPPPAGRGRGHLQLWQHPARPRLPEDPTSHHRG*HGRAV*G*AEPLPSAQGPSSGLWPSGGCWAPGGHPLFTPTACKQAAFGPEPAPGGGCQSRPADPDDLPCRRLPAPSHRVAERWAACLFSQTPAAA*WLPGH*PSGCRRWRLLHLCRFQWAGPRPAMGPAQSSGGADNLRTAPYCDSARG*YGQAIVCGSRRKCEHQVVQERATCAG*WPPCPPVPRWHAAHLQLAGQG*GLLHVQCLPGEPGSQPQHRGEGGLTSTHRPAQGPWQGLRRPARAGQL*FDPAGPALWQ*VLLQLLLCQLFTFPASRSAHLAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29592 PEAK1::LINGO1 ENSG00000173517.11::ENSG00000169783.13 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 703 TRUE 1234 TRUE 480 PEAK1 ENSG00000173517.11 protein_coding - - chr15:77100656-77420144:- chr15:77420006:- chr15:77392998-77712486:- chr15:77712348:- LINGO1 ENSG00000169783.13 protein_coding - - chr15:77613027-77820900:- chr15:77615900:- chr15:77905369-78113242:- chr15:77908242:- chr15:77362063,chr15:77362065 chr15:77659138,chr15:77659137 NA NA chr15:77654405,chr15:77654407 chr15:77951480,chr15:77951479 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.19Mb] 11 8 11 2 ONLY_REF_SPLICE YES_LDAS 0.1372 GT 1.7819 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Pseudopodium-enriched atypical kinase 1 Other NKF3 Q9H792 FALSE NA NA NA NA NA NA TRUE Pancreas no_match FALSE NA NA NA NA NA NA NA NA NA TRUE Lower grade glioma CENTRAL_NERVOUS_SYSTEM no_match 77133005 FALSE 77690901 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29595 ARID2::SCAF11 ENSG00000189079.18::ENSG00000139218.18 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 705 TRUE 1235 TRUE 481 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45860949:+ chr12:46123489-46301823:+ chr12:46254732:+ SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45964188:- chr12:46312914-46385903:- chr12:46357971:- chr12:45870225,chr12:45870226,chr12:45870226 chr12:45979173,chr12:45979108,chr12:45979172 NA NA chr12:46264008,chr12:46264009,chr12:46264009 chr12:46372956,chr12:46372891,chr12:46372955 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ARID|18-101|4.7e-30^RFX_DNA_binding|522-602|4e-25 zf-RING_10-PARTIAL|~28-31|2.7^zf-P11|49-63|0.00094^zf-C3HC4_3|54-60|0.096^zf-rbx1|54-60|0.32^zf-RING_16|55-95|4e-05^zf-RING_2|56-98|3.5e-11^zf-C3HC4_2|56-96|3.2e-09^zf-C3HC4_3|56-103|1e-07^zf-RING_5|56-98|6.2e-08^Prok-RING_4|56-61|0.084^zf-C3HC4|57-95|4.2e-08^zf-RING_UBOX|57-95|1.1e-07^zf-C3HC4_4|57-93|1.4e-06^zf-RING_11|57-84|0.0001^zf-RING_10|57-95|0.0002^Prok-RING_4|60-99|4.4e-05^zf-ANAPC11|73-102|8e-06^zf-rbx1|74-98|2.3e-07^zf-P11|75-101|0.035 ["ARID2:FoundationOne_panel","ARID2:Oncogene","ARID2:ArcherDX_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.01Mb];LOCAL_INVERSION:+:-:[11091] 10 13 10 6.19 ONLY_REF_SPLICE YES_LDAS 0.1708 GT 1.8892 AG 1.8256 ENST00000334344.11 1-4922 ENST00000266589.10 28-353 chr12|+|[0]45729837-45729928[1]|[2]45730044-45730137[2]|[0]45731217-45731314[1]|[2]45811418-45811551[0]|[1]45817670-45817888[0]|[1]45821420-45821487[2]|[0]45836589-45836655[0]|[1]45836741-45836991[2]|[0]45837321-45837417[0]|[1]45837498-45837707[0]|[1]45839329-45839496[0]|[1]45846856-45846937[1]|[2]45848836-45848970[1]|[2]45849580-45849776[0]|[1]45850036-45852896[2]|[0]45860801-45860949[1]<==>chr12|-|[1]45948530-45948537[0]|[2]45951650-45951727[0]|[2]45961700-45961857[1]|[0]45964107-45964188[0] atggcaaactcgacggggaaggcgcctccggacgagcggagaaagggactcgctttcctggacgagctgcggcagttccaccacagcagagggtcgccttttaaaaaaatccctgcggtgggtgggaaggagctggatcttcacggtctctacaccagagtcactactttaggcggattcgcgaaggtttctgagaagaatcagtggggagaaattgttgaagagttcaactttcccagaagttgttctaacgctgcctttgctttaaaacagtattacttgcgttacctagaaaagtacgagaaagttcatcattttggggaggatgatgatgaggtaccaccaggcaatccaaagccacagcttcctattggtgcaattccatcttcctacaattaccagcaacacagtgtgtcggattatctgcgtcaaagttatgggctgtccatggactttaattcgccaaatgattataataaattggtgctttcactgttatctggactcccaaatgaagtggactttgctattaacgtatgcactctcctatcaaatgaaagcaagcacgtcatgcaacttgaaaaagatcctaaaatcatcactttactacttgctaatgccggggtgtttgacgacactttaggatccttttccactgtatttggagaagaatggaaagagaagactgatagagacttcgttaagttttggaaagacatcgttgatgataatgaagttcgtgacctcatttctgacagaaacaagtctcatgaaggtacatcaggagaatggatttgggagtctttatttcatccacctcgaaagctgggcattaacgatattgaaggacagcgggtacttcagattgcagtgattttgagaaatctttcctttgaggagggcaatgttaagctcttggcagctaatcgtacctgtcttcgtttcctattactttctgcacatagtcattttatttctttaaggcaattaggccttgacacattaggaaatattgcagctgagcttttactggaccctgttgatttcaaaactactcatctgatgtttcatactgttacaaaatgtctaatgtcaagggatagatttttaaagatgagaggcatggaaattttgggaaatctttgcaaagcagaagataatggtgttttaatttgtgaatatgtggatcaggattcctacagagagatcatttgtcatctcactttacctgatgtgctgcttgtaatctcaacactcgaggtgctatacatgctcacggaaatgggagatgttgcttgcacaaaaattgcaaaagtagaaaagagcatagacatgttagtgtgtctggtttctatggatattcagatgtttggccctgatgcactagctgcggtaaaactcattgaacacccaagttccagtcatcaaatgttatctgaaattaggccacaagctatagagcaagtccaaacccagactcatgtagcatctgccccagcttccagagcagttgtagcgcagcatgttgctccacctccaggaatagtggaaatagatagtgagaagtttgcttgtcagtggctaaatgctcattttgaagtaaatccagattgttctgtttctcgagcagaaatgtattctgaatacctctcgacttgcagtaaattagctcgtggtggaatcctaacatcaactggattttataaatgtcttagaacggtctttccaaatcatacagtgaagagagtggaggattccagtagcaatgggcaggcacatattcatgtggtaggagtaaaacggagggctataccacttcccattcagatgtactatcagcagcaaccagtttctacttctgttgttcgtgttgattctgttcctgatgtatctcctgctccttcacctgcaggaatccctcatggatcacaaaccataggaaaccattttcagaggactcctgttgccaaccaatcttcaaatctgactgcaacacaaatgtcttttcctgtacaaggtgttcatactgtggcacaaactgtttcaagaattccacaaaatccttcacctcatacccaccagcaacaaaatgctccagtgactgtcattcaaagtaaagctccaattccttgtgaagttgttaaggctacagttatccagaattccataccccagacaggagttcctgttagtattgctgttggaggaggacctccacagagttctgttgttcagaatcatagtacagggccacaacctgttacagttgtgaattctcagacattgcttcaccatccatctgtaattccacagcagtctccattacacacagtggtaccaggacagatcccttcaggcactcctgttacagtaattcaacaagctgtcccacagagtcatatgtttggcagagtacagaacataccagcatgtacttctacagtttcacagggtcaacagttaatcaccacatcaccccaacctgtgcaaacttcatctcaacagacatcagctggtagccagtcacaagatactgttatcatagcacccccacagtatgtaacaacttctgcatccaatattgtctcagcaacttcagtacagaattttcaggtagctacaggacaaatggttactattgctggtgtcccaagtccacaagcctcaagggtagggtttcagaacattgcaccaaaacctctcccttctcagcaagtttcatctacagtggtacagcagcctattcaacaaccacagcagccaacccaacaaagcgtagtgattgtaagccagccagctcaacaaggtcaaacttatgcaccagccattcaccaaattgttcttgctaatccagcagctcttccagctggtcagacagttcagctaactggacaacctaacataactccatcttcttcaccatcacctgtcccagctactaataaccaagtccctactgccatgtcgtcgtcctctacccctcaatcacagggaccacctcctactgtcagtcaaatgttatctgtgaaaaggcagcaacagcagcaacattcaccagcacccccaccacagcaggtacaagtacaagttcagcagccccaacaagtacagatgcaagttcaacctcaacagtcgaatgcaggagttggtcagcctgcctctggtgagtcgagtctgattaaacagcttctgcttccgaaacgtggtccttcaacaccaggtggtaagcttattctcccagctccacagattcctccccctaataatgcaagagctcctagccctcaggtggtctatcaggtggccagtaaccaagccgcaggttttggagtgcaggggcaaactccagctcagcagctattggttgggcagcaaaatgttcagttggtcccaagtgcaatgccaccctcagggggagtacaaactgtgcccatttcgaacttacaaatattgccaggtccactgatctcaaatagcccagcaaccattttccaagggacttctggcaaccaggtaaccataacagttgtgccaaatacgagttttgcacctgcaactgtgagtcagggaaatgcaactcagctcattgctccagcaggaattaccatgagcggaacgcagacaggagttggacttccagtacaaacgcttccagccactcaagcatctcctgctggacaatcatcatgtactactgctactcccccattcaaaggtgataaaataatttgccaaaaggaggaggaagcaaaggaagcaacaggtttacatgttcatgaacgtaaaattgaagtcatggagaacccgtcctgccgacgaggagccacaaacaccagcaatggggatacaaaggaaaatgaaatgcatgtgggaagtcttttaaatgggagaaagtacagtgactcaagtctacctccttcaaactcagggaaaattcaaagtgagactaatcagtgctcactaatcagtaatgggccatcattggaattaggtgagaatggagcatctgggaaacagaactcagaacaaatagacatgcaagatatcaaaagtgatttgagaaaaccgctagttaatggaatctgtgattttgataaaggagatggttctcatttaagcaaaaacattccaaatcataaaacttccaatcatgtaggaaatggtgagatatctccaatggaaccacaagggactttagatatcactcagcaagatactgccaaaggtgatcaactagaaagaatttctaatggacctgtattaactttgggtggttcatctgtgagcagtatacaggaggcttcaaatgcggcaacacagcaatttagtggtactgatttgcttaatggacctctagcttcaagtttgaattcagatgtgcctcagcaacgcccaagtgtagttgtctcaccacattctacaacctctgttatacagggacatcaaatcatagcagttcccgactcaggatcaaaagtatcccattctcctgccctatcatctgacgttcggtctacaaatggcacagcagaatgcaaaactgtaaagaggccagcagaggatactgatagggaaacagtcgcaggaattccaaataaagtaggagttagaattgttacaatcagtgaccccaacaatgctggctgcagcgcaacaatggttgctgtgccagcaggagcagatccaagcactgtagctaaagtagcaatagaaagtgctgttcagcaaaagcaacagcatccaccaacatatgtacagaatgtggtcccgcagaacactcctatgccaccttcaccagctgtacaagtgcagggccagcctaacagttctcagccttctccattcagtggatccagtcagcctggagatccaatgagaaaacctggacagaacttcatgtgtctgtggcagtcttgtaaaaaGAAACCCTTTTCCAAAGAGAAATGAAGAAGAAAACTGTATGTACCCTAAATATGGGAGATAAGAAGTATGAAGACATGGAAGGTGAAGAAAACGGAGATAATACTATTTCCACTGGTCTGTTGTACAGTGAGGCTGACAGATGCCCAATATGTCTTAATTGTCTATTAGAAAAGGAAGTTGGTTTTCCAGAAAGCTGTAATCATGTCTTCTGTATGACTTGTATTCTTAAATGGGCAGAGACACTGGCTTCATGTCCTATTGACCGTAAACCTTTTCAGGCAGTGTTTAAATTCAGTGCATTGGAAGGTTATGTTAAGGTTCAAGT MANSTGKAPPDERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYNYQQHSVSDYLRQSYGLSMDFNSPNDYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDPKIITLLLANAGVFDDTLGSFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNKSHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAVILRNLSFEEGNVKLLAANRTCLRFLLLSAHSHFISLRQLGLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDRFLKMRGMEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVISTLEVLYMLTEMGDVACTKIAKVEKSIDMLVCLVSMDIQMFGPDALAAVKLIEHPSSSHQMLSEIRPQAIEQVQTQTHVASAPASRAVVAQHVAPPPGIVEIDSEKFACQWLNAHFEVNPDCSVSRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDSSSNGQAHIHVVGVKRRAIPLPIQMYYQQQPVSTSVVRVDSVPDVSPAPSPAGIPHGSQTIGNHFQRTPVANQSSNLTATQMSFPVQGVHTVAQTVSRIPQNPSPHTHQQQNAPVTVIQSKAPIPCEVVKATVIQNSIPQTGVPVSIAVGGGPPQSSVVQNHSTGPQPVTVVNSQTLLHHPSVIPQQSPLHTVVPGQIPSGTPVTVIQQAVPQSHMFGRVQNIPACTSTVSQGQQLITTSPQPVQTSSQQTSAGSQSQDTVIIAPPQYVTTSASNIVSATSVQNFQVATGQMVTIAGVPSPQASRVGFQNIAPKPLPSQQVSSTVVQQPIQQPQQPTQQSVVIVSQPAQQGQTYAPAIHQIVLANPAALPAGQTVQLTGQPNITPSSSPSPVPATNNQVPTAMSSSSTPQSQGPPPTVSQMLSVKRQQQQQHSPAPPPQQVQVQVQQPQQVQMQVQPQQSNAGVGQPASGESSLIKQLLLPKRGPSTPGGKLILPAPQIPPPNNARAPSPQVVYQVASNQAAGFGVQGQTPAQQLLVGQQNVQLVPSAMPPSGGVQTVPISNLQILPGPLISNSPATIFQGTSGNQVTITVVPNTSFAPATVSQGNATQLIAPAGITMSGTQTGVGLPVQTLPATQASPAGQSSCTTATPPFKGDKIICQKEEEAKEATGLHVHERKIEVMENPSCRRGATNTSNGDTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCSLISNGPSLELGENGASGKQNSEQIDMQDIKSDLRKPLVNGICDFDKGDGSHLSKNIPNHKTSNHVGNGEISPMEPQGTLDITQQDTAKGDQLERISNGPVLTLGGSSVSSIQEASNAATQQFSGTDLLNGPLASSLNSDVPQQRPSVVVSPHSTTSVIQGHQIIAVPDSGSKVSHSPALSSDVRSTNGTAECKTVKRPAEDTDRETVAGIPNKVGVRIVTISDPNNAGCSATMVAVPAGADPSTVAKVAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQPGDPMRKPGQNFMCLWQSCKKKPFSKEK*RRKLYVP*IWEIRSMKTWKVKKTEIILFPLVCCTVRLTDAQYVLIVY*KRKLVFQKAVIMSSV*LVFLNGQRHWLHVLLTVNLFRQCLNSVHWKVMLRFK FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma,Rectum adenocarcinoma SKIN,RECTUM no_match 46125097,46125097 FALSE,FALSE 46357971,46357971 TRUE,TRUE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 29600 CDK13::SUGCT ENSG00000065883.18::ENSG00000175600.16 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 710 FALSE NA FALSE NA CDK13 ENSG00000065883.18 protein_coding + + chr7:39950121-40099580:+ chr7:40078851:+ chr7:39989720-40139179:+ chr7:40118450:+ SUGCT ENSG00000175600.16 protein_coding + + chr7:40135005-40860763:+ chr7:40449287:+ chr7:40174604-40900362:+ chr7:40488886:+ chr7:40085386,chr7:40085382 chr7:40446091,chr7:40446084 NA NA chr7:40124985,chr7:40124981 chr7:40485690,chr7:40485683 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame THRAP3_BCLAF1|197-386|8^Pkinase_fungal|238-279|8^THRAP3_BCLAF1|393-576|5.3e-07^Pkinase|707-998|1.1e-74^PK_Tyr_Ser-Thr|710-957|3.5e-38^Pkinase_fungal|710-775|0.33^Haspin_kinase|712-870|1.3e-09^ABC1|714-737|0.0059^Kdo|748-859|2.7e-05^Kinase-like|761-901|8.1e-06^ABC1|826-876|1.8e-07^Pkinase_fungal|829-878|5e-05^PK_Tyr_Ser-Thr|1089-1123|2.3 none ["TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.04Mb];NEIGHBORS[37843] 8 5 8 5 ONLY_REF_SPLICE YES_LDAS 0.1372 GT 1.8323 AG 1.8892 ENST00000181839.10 1-3029 ENST00000628514.3 817-1395 chr7|+|[0]39950642-39951852[1]|[2]39987599-39988258[1]|[2]39997494-39997664[1]|[2]39999361-39999500[0]|[1]40001861-40002031[0]|[1]40045836-40046025[1]|[2]40047821-40047877[1]|[2]40062826-40062927[1]|[2]40063023-40063100[1]|[2]40078005-40078121[1]|[2]40078720-40078851[1]<==>chr7|+|[0]40449287-40449358[2]|[0]40459101-40459198[1]|[2]40496284-40496386[2]|[0]40684056-40684133[2]|[0]40749434-40749497[0]|[1]40860316-40860479[2] atgccgagcagctcggacacggcgctggggggaggcgggggcctgagctgggcggagaagaagttggaggaacgccgcaagcggaggcgattcctgtcccctcagcagccgccgctgctgttgccgctcctgcagccgcagctcctgcaaccgccgccgcccccgccgcctctgctcttcctggctgctcccggcacggccgccgccgcagccgccgccgccgcggcctcctcctcttgcttcagcccgggcccccctctggaggtcaagcggctggcgagaggcaagaggcgcgcaggagggcggcagaagcggcgtcgcgggccccgcgccgggcaggaggcggagaagcgtcgggtcttctcgctgccccagccgcagcaggacggcggtggcggtgctagtagcggcgggggtgtgaccccgctggtggaatacgaggatgtgagctcccagtccgagcaggggctgctgctggggggggccagcgcggcaacggcggcgacggctgccgggggaacggggggcagcggcgggagtccggcctcctcctccggcacccagcggcgcggggaggggtcggagcgcaggccccgccgggaccgccgcagcagcagtggccgcagcaaggagcgccaccgcgagcaccggcggcgggatgggcagcgcggtggcagcgaggcctccaagtcccgcagccgccacagccacagcggcgaggaacgggccgaggtcgccaagagcggcagcagcagcagcagcggcggccgccggaaaagcgcttcggccacatccagcagcagtagcagccgcaaggaccgggactcgaaggcccaccgcagccggactaagtcgtccaaggagccgccttcggcctacaaggaaccgcccaaggcctaccgggaggacaagaccgagcctaaggcctacaggcggcggcggtccctcagcccactgggaggccgggacgacagcccggtgtcccacagggcctctcagagcctgaggagccgcaagtcccccagcccggcaggaggtggcagcagcccctattctcggcggctgccgcgctccccgagcccctacagtcgccgccgctcccccagctacagccgccacagctcctacgagcggggcggcgacgtgtcccctagtccctacagcagcagcagctggcgccgctctcgcagtccctacagccctgtgctcagacggtctggaaaatcccgaagcagaagcccgtattcatctaggcattcaagatctcgtagcaggcacagattgtctagatccagaagtcgtcattctagtatttctcctagcacactaactctgaagagtagcctggcagctgaattgaacaagaataaaaaagcacgagcagcagaggcagcaagagccgcagaagcagcgaaagctgcagaagcaactaaggctgctgaggctgctgccaaggctgcaaaagcttcaaacacttctacacctaccaaggggaacacggaaactagtgccagtgcatcacaaacaaaccatgtgaaggatgtgaagaaaattaaaattgaacatgcaccttctccctcaagtggtggaactttaaaaaatgacaaagcaaaaacaaagccacctcttcaggtaacgaaggtggaaaataatttgattgtagataaagccaccaagaaagcagtcatagttggaaaggagagtaaatctgctgctacaaaggaggaatcagtatctcttaaagagaaaaccaaaccacttacaccaagcataggagccaaggagaaggagcaacatgtagctttagtcacctctacattaccaccgttacctttgcctcccatgctgcctgaagataaagaagctgatagcttacgaggaaatatttcagtaaaagcagttaaaaaagaagtagaaaagaaactccgatgtcttcttgctgatttaccgctgccccctgagctaccaggaggagatgatctttcaaagagtccagaggaaaagaaaacagcaacacagttacatagtaaaaggaggcctaaaatatgtgggcctcgctatggtgaaaccaaagaaaaagatattgactggggaaaacgctgcgtggataaatttgatatcatcggaattattggagaaggtacttacggacaagtttacaaagccagggataaagacactggagaaatggtagccttaaaaaaagtacgtctggataatgaaaaggaaggctttccaattacagcaattcgagaaattaaaattctccggcagcttacccatcagagtattatcaatatgaaggaaatagtgactgataaagaagatgctttggatttcaagaaggacaaaggtgcattttatctggtgtttgaatatatggaccatgatctgatgggactactggaatcaggcttggttcattttaatgaaaatcacataaagtcatttatgagacagctcatggagggtctggattattgtcataagaagaactttttgcatagagatattaaatgttccaatatccttctaaataatagagggcagataaaacttgcagactttggacttgctcgattgtatagctcagaagaaagtcggccgtatactaacaaggtaattactttatggtaccgtccacctgaactgctactgggagaagaacgatacacaccagccattgatgtatggagctgtggctgtatccttggcgaactcttcactaaaaaacctatatttcaagcaaatcaggaacttgcacaactagaattaataagccgaatatgtgggagtccatgtcctgcagtgtggcctgatgtaatcaaactaccatatttcaacaccatgaaaccaaagaagcaatatcgtcgaaagttaagagaagaatttgtttttattcctgcagctgcgctagacttatttgattacatgcttgccttggatcctagtaagcgctgcactgctgaacaggctcttcagtgcgagttcctccgagatgtggaaccctcaaaaatgcctccaccagaGCTTTTAAAACCAAGGATGGCTATATTGTAGTTGGAGCAGGAAATAACCAGCAGTTTGCCACCGTCTGCAAGATCTTGGATTTGCCTGAGTTGATTGATAATTCCAAGTATAAAACTAACCACCTTCGGGTACACAATAGAAAAGAGCTTATTAAAATATTATCTGAACGGTTTGAAGAAGAACTGACCAGCAAGTGGTTATATCTTTTTGAAGGCAGTGGAGTCCCGTATGGCCCAATCAACAACATGAAGAATGTATTTGCAGAACCTCAGAACGCTGTCTCTGGCTTCCAAAGCCTGCTGCATTCCTTGGCCCATGGCCCCTTCCTTCATCTTCAAGGATCAGCAAGGGTATTACACAATGGCCTCGTTATGGAGATGGAGCATCCAACTGTGGGGAAGATTTCCGTCCCAGGCCCAGCTGTGAGATACAGTAAGTTCAAGATGTCAGAGGCCAGGCCGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGATACGATGACAGGGCCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGACCAACATGAAACTCACTGA MPSSSDTALGGGGGLSWAEKKLEERRKRRRFLSPQQPPLLLPLLQPQLLQPPPPPPPLLFLAAPGTAAAAAAAAAASSSCFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGGVTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSGGSPASSSGTQRRGEGSERRPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPPKAYREDKTEPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKDVKKIKIEHAPSPSSGGTLKNDKAKTKPPLQVTKVENNLIVDKATKKAVIVGKESKSAATKEESVSLKEKTKPLTPSIGAKEKEQHVALVTSTLPPLPLPPMLPEDKEADSLRGNISVKAVKKEVEKKLRCLLADLPLPPELPGGDDLSKSPEEKKTATQLHSKRRPKICGPRYGETKEKDIDWGKRCVDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENHIKSFMRQLMEGLDYCHKKNFLHRDIKCSNILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLALDPSKRCTAEQALQCEFLRDVEPSKMPPPELLKPRMAIL*LEQEITSSLPPSARSWICLS*LIIPSIKLTTFGYTIEKSLLKYYLNGLKKN*PASGYIFLKAVESRMAQSTT*RMYLQNLRTLSLASKACCIPWPMAPSFIFKDQQGYYTMASLWRWSIQLWGRFPSQAQL*DTVSSRCQRPGRPRCSGSTQRTS*RRS*DTMTGPSGSCSALEWWTNMKLT FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 13 CMGC CDK CRK7 Q14004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29601 ARID2::SCAF11 ENSG00000189079.18::ENSG00000139218.18 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1235 TRUE 481 ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45860949:+ chr12:46123489-46301823:+ chr12:46254732:+ SCAF11 ENSG00000139218.18 protein_coding - - chr12:45919131-45992120:- chr12:45975734:- chr12:46312914-46385903:- chr12:46369517:- chr12:45870225,chr12:45870226,chr12:45870226 chr12:45979173,chr12:45979108,chr12:45979172 NA NA chr12:46264008,chr12:46264009,chr12:46264009 chr12:46372956,chr12:46372891,chr12:46372955 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ARID2:FoundationOne_panel","ARID2:Oncogene","ARID2:ArcherDX_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.01Mb];LOCAL_INVERSION:+:-:[11091] 8 16 8 9.81 ONLY_REF_SPLICE YES_LDAS 0.1879 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma,Rectum adenocarcinoma SKIN,RECTUM no_match 46125097,46125097 FALSE,FALSE 46357971,46357971 FALSE,FALSE YES,YES CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 29603 FNBP4::NUP160 ENSG00000109920.13::ENSG00000030066.14 MKN45 SRR8615515 SRR8652124 STOMACH carcinoma (diffuse_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 701 FALSE NA FALSE NA FNBP4 ENSG00000109920.13 protein_coding - - chr11:47716494-47767443:- chr11:47750916:- chr11:47738046-47788995:- chr11:47772468:- NUP160 ENSG00000030066.14 protein_coding - - chr11:47778087-47848555:- chr11:47813415:- chr11:47799639-47870107:- chr11:47834967:- chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123,chr11:47747123 chr11:47815119,chr11:47815142,chr11:47815143,chr11:47815165,chr11:47815168,chr11:47815151,chr11:47815182 NA NA chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675,chr11:47768675 chr11:47836671,chr11:47836694,chr11:47836695,chr11:47836717,chr11:47836720,chr11:47836703,chr11:47836734 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Glyco_hydro_18|194-256|1.8e-05^WW|219-246|1.1e-12^Glyco_hyd_101C|230-252|0.00024^Glyco_hydro_18|576-623|0.4^WW|598-627|1.1e-13^Glyco_hyd_101C|606-633|0.005 none ["FNBP4:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];LOCAL_REARRANGEMENT:-:[10644] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1267 GT 1.6402 AG 1.8062 ENST00000263773.10 1-906 ENST00000378460.7 1585-4209 chr11|-|[2]47750916-47751036[2]|[1]47751143-47751290[1]|[0]47752916-47753102[0]|[2]47754528-47754664[1]|[0]47765270-47765362[1]|[0]47767069-47767288[0]<==>chr11|-|[2]47779105-47779194[0]|[2]47780343-47780447[0]|[2]47783073-47783198[0]|[2]47784922-47785063[2]|[1]47786453-47786554[2]|[1]47788182-47788305[1]|[0]47788501-47788611[1]|[0]47791930-47791990[0]|[2]47792786-47792946[1]|[0]47797779-47797884[0]|[2]47797978-47798074[2]|[1]47798168-47798262[0]|[2]47798368-47798463[0]|[2]47801811-47801930[0]|[2]47803438-47803536[0]|[2]47804549-47804618[2]|[1]47806153-47806312[1]|[0]47807070-47807140[2]|[1]47808396-47808529[0]|[2]47812064-47812224[1]|[0]47812302-47812429[2]|[1]47812882-47813047[1]|[0]47813316-47813415[0] atggggaagaagtcccgggcggtacccggccgtaggcccatcctgcaactctctccgccgggtcctcggggcagcacgccgggccgggacccggagccggaacccgacactgagccggactcaaccgcggcggtccccagccagcccgccccgtcggcggcgacgaccaccaccaccgcggtgactgccgccgcggcctcggacgactcgccttcagaagatgaacaggaagcggtgcaggaggttcctagagttgttcagaatcctccaaaaccagtcatgaccactagacccacagctgttaaagcaacaggcggtctatgcttgcttggtgcttatgctgacagtgatgacgatgacaatgatgtttccgaaaaactagcacaatccaaagagacaaatggaaaccagtcaactgatattgatagtacattggccaacttcctagcggagatcgatgccataacagctcctcagcctgcagctcctgtaggagcttctgctccacctccaactccacctcgaccagagccaaaggaagcagcaacatctaccctttcttcttctacttcaaatggaacagactccacccaaacatctggttggcaatatgatactcagtgttcactggcaggagtcggaattgagatgggcgattggcaggaagtctgggatgagaacacgggatgttattattattggaatacacaaacaaatgaagtgacttgggagttaccccaatatcttgccacacaggtacagggattacagcattaccagcccagttctgtgccaggtgctgaaactagttttgtggtaaatacagacatatattctaaggagaaaacgatttctgtttccagtagtaaaagtggaccagtcatagccaagcgagaagttaaaaagGGGTACCTGTCTTTCCTTATTCCCTCATCCTTAGTGGATCATTTGTATCTCCTGCCTTATGAGAACCTTTTGACAGAAGATGAGACAACCATATCTGATGATGTGGACATCGCTCGGGATGTCATATGTCTTATAAAATGCCTCCGGCTGATTGAAGAGTCAGTAACTGTGGATATGTCAGTTATAATGGAAATGAGTTGTTATAACCTACAGTCTCCGGAAAAGGCTGCAGAGCAGATTCTGGAAGATATGATCACTATTGATGTAGAAAATGTGATGGAGGATATTTGTAGTAAACTGCAAGAGATTAGGAACCCAATCCATGCAATTGGACTACTTATACGGGAAATGGATTATGAAACAGAAGTGGAAATGGAAAAGGGATTCAATCCAGCTCAGCCTTTGAATATTCGAATGAATCTTACCCAGCTCTATGGTAGTAACACAGCAGGGTATATTGTGTGCAGAGGGGTGCATAAAATCGCCAGTACTCGTTTCCTGATCTGCAGAGATCTTTTGATCTTACAGCAGCTGTTAATGAGGCTTGGAGATGCTGTGATTTGGGGAACTGGTCAGCTCTTTCAAGCTCAGCAAGACCTACTACATCGAACAGCTCCCCTACTCTTATCTTATTACCTCATTAAATGGGGAAGTGAGTGCTTGGCAACTGATGTTCCACTTGACACACTGGAGTCTAATCTCCAACACTTATCAGTACTGGAATTAACAGACTCTGGTGCTTTAATGGCAAATAGGTTTGTATCTAGTCCTCAGACTATTGTGGAGTTATTCTTCCAAGAAGTTGCAAGAAAACACATTATATCTCACCTCTTCTCTCAGCCAAAGGCACCTCTGAGCCAAACTGGATTGAATTGGCCTGAAATGATTACTGCAATTACCAGTTATTTATTGCAGCTTTTATGGCCTAGCAATCCTGGTTGTCTCTTTCTAGAATGTTTGATGGGAAATTGCCAATATGTACAATTGCAGGATTATATTCAACTGCTACATCCCTGGTGTCAAGTCAATGTTGGTTCCTGTCGATTTATGCTGGGAAGGTGTTACCTAGTTACAGGAGAAGGACAGAAGGCTCTGGAATGTTTTTGTCAGGCAGCATCTGAAGTAGGCAAAGAGGAATTCTTGGATCGCTTGATTCGCTCAGAGGATGGGGAGATCGTGTCTACCCCCAGGCTGCAGTATTATGACAAGGTTTTACGACTACTAGATGTCATTGGTTTGCCTGAACTGGTTATTCAGTTGGCTACATCAGCCATAACTGAAGCAGGTGATGACTGGAAAAGTCAGGCTACTCTAAGGACATGTATTTTCAAACATCATTTGGATTTGGGTCACAATAGCCAAGCATATGAAGCCTTAACCCAAATTCCTGATTCCAGCAGGCAATTAGATTGTTTACGGCAGTTGGTGGTAGTTCTTTGTGAACGCTCACAGCTACAGGATCTTGTAGAGTTTCCCTATGTGAATCTGCATAATGAGGTTGTGGGAATAATTGAGTCACGTGCTAGAGCTGTGGACCTTATGACTCACAATTACTATGAACTTCTGTATGCCTTTCACATCTATCGCCACAATTACCGCAAGGCTGGCACAGTGATGTTTGAGTATGGAATGCGGCTTGGCAGAGAAGTTCGAACTCTCCGGGGACTTGAGAAACAAGGCAACTGTTATCTGGCTGCTCTCAATTGTTTACGACTTATTCGTCCAGAATATGCGTGGATTGTGCAGCCAGTGTCTGGTGCAGTGTATGATCGCCCTGGAGCATCCCCTAAGAGGAATCATGATGGAGAATGCACAGCTGCCCCCACAAATCGACAAATTGAAATCCTGGAACTGGAAGATCTGGAGAAAGAGTGTTCCTTGGCTCGCATCCGCCTCACTTTGGCTCAGCATGATCCATCAGCGGTTGCAGTTGCTGGAAGTTCATCAGCAGAGGAAATGGTCACTCTCTTGGTTCAGGCGGGCCTCTTTGACACTGCCATATCACTCTGTCAGACTTTTAAGCTTCCCTTAACGCCAGTCTTTGAAGGGCTTGCCTTCAAATGCATCAAATTGCAATTTGGAGGAGAGGCAGCACAAGCAGAAGCCTGGGCCTGGCTAGCAGCCAATCAGCTCTCATCTGTCATCACTACTAAGGAGTCTAGTGCTACAGATGAAGCATGGCGACTATTATCCACTTACCTGGAGAGGTACAAAGTCCAGAATAACTTGTATCACCACTGTGTAATCAACAAGCTCTTGTCTCATGGAGTGCCTCTGCCTAATTGGCTTATAAACAGTTACAAGAAGGTTGATGCTGCTGAATTGCTTCGTTTATACTTAAACTATGACCTTTTAGAAGAAGCTGTGGATTTGGTGTCAGAATATGTGGATGCTGTATTGGGAAAAGGACATCAATACTTCGGAATTGAGTTTCCACTGTCCGCAACAGCCCCAATGGTGTGGCTTCCATACTCCTCTATTGATCAGCTTCTCCAAGCTCTGGGAGAGAACAGTGCCAACAGTCACAACATCGCACTGTCCCAGAAAATACTTGACAAATTGGAGGACTACCAGCAAAAAGTTGATAAGGCAACACGGGATTTATTATATCGTCGGACCTTGTGA MGKKSRAVPGRRPILQLSPPGPRGSTPGRDPEPEPDTEPDSTAAVPSQPAPSAATTTTTAVTAAAASDDSPSEDEQEAVQEVPRVVQNPPKPVMTTRPTAVKATGGLCLLGAYADSDDDDNDVSEKLAQSKETNGNQSTDIDSTLANFLAEIDAITAPQPAAPVGASAPPPTPPRPEPKEAATSTLSSSTSNGTDSTQTSGWQYDTQCSLAGVGIEMGDWQEVWDENTGCYYYWNTQTNEVTWELPQYLATQVQGLQHYQPSSVPGAETSFVVNTDIYSKEKTISVSSSKSGPVIAKREVKKGYLSFLIPSSLVDHLYLLPYENLLTEDETTISDDVDIARDVICLIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAAEQILEDMITIDVENVMEDICSKLQEIRNPIHAIGLLIREMDYETEVEMEKGFNPAQPLNIRMNLTQLYGSNTAGYIVCRGVHKIASTRFLICRDLLILQQLLMRLGDAVIWGTGQLFQAQQDLLHRTAPLLLSYYLIKWGSECLATDVPLDTLESNLQHLSVLELTDSGALMANRFVSSPQTIVELFFQEVARKHIISHLFSQPKAPLSQTGLNWPEMITAITSYLLQLLWPSNPGCLFLECLMGNCQYVQLQDYIQLLHPWCQVNVGSCRFMLGRCYLVTGEGQKALECFCQAASEVGKEEFLDRLIRSEDGEIVSTPRLQYYDKVLRLLDVIGLPELVIQLATSAITEAGDDWKSQATLRTCIFKHHLDLGHNSQAYEALTQIPDSSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGTVMFEYGMRLGREVRTLRGLEKQGNCYLAALNCLRLIRPEYAWIVQPVSGAVYDRPGASPKRNHDGECTAAPTNRQIEILELEDLEKECSLARIRLTLAQHDPSAVAVAGSSSAEEMVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKCIKLQFGGEAAQAEAWAWLAANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINKLLSHGVPLPNWLINSYKKVDAAELLRLYLNYDLLEEAVDLVSEYVDAVLGKGHQYFGIEFPLSATAPMVWLPYSSIDQLLQALGENSANSHNIALSQKILDKLEDYQQKVDKATRDLLYRRTL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29605 ITGB4::MYO15B ENSG00000132470.14::ENSG00000266714.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 711 FALSE NA FALSE NA ITGB4 ENSG00000132470.14 protein_coding + + chr17:75721328-75757818:+ chr17:75752577:+ chr17:73717408-73753899:+ chr17:73748658:+ MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75602517:+ chr17:73583881-73622929:+ chr17:73598598:+ chr17:75752993,chr17:75752990 chr17:75602256,chr17:75602250 NA NA chr17:73749074,chr17:73749071 chr17:73598337,chr17:73598331 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PSI_integrin|28-73|9e-15^Integrin_beta|127-369|5.9e-104^I-EGF_1|457-485|2e-14^EGF_2|468-490|0.00021^DL-JAG_EGF-like|478-491|0.00022^EGF_2|510-536|0.00024^I-EGF_1|512-529|0.00072^EGF_2|543-573|1.3e-08^I-EGF_1|551-568|0.00097^DL-JAG_EGF-like|561-577|0.0014^EGF_2|582-606|4.6e-06^I-EGF_1|590-605|0.0036^Integrin_B_tail|626-709|5.8e-21^Filamin|634-687|0.0016^SEA|828-888|0.00026^Calx-beta|980-1083|8.8e-24^fn3|1129-1208|4.8e-19^Pur_ac_phosph_N|1132-1212|0.0036^fn3|1221-1309|7.2e-17^Pur_ac_phosph_N|1225-1310|0.00048^fn3|1460-1541|2.2e-22^Pur_ac_phosph_N|1463-1541|1.1e-06^DL-JAG_EGF-like|1535-1539|5.4^fn3|1572-1657|9.1e-21^Pur_ac_phosph_N|1577-1650|0.0014^Filamin|1629-1670|0.42 none ["ITGB4:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.09Mb];LOCAL_REARRANGEMENT:+:[94479] 141 66 141 66 ONLY_REF_SPLICE YES_LDAS 2.2542 GT 1.9656 AG 1.7968 ENST00000450894.7 1-4108 ENST00000645453.3 3652-9291 chr17|+|[0]75724704-75724782[0]|[1]75727195-75727277[2]|[0]75727404-75727505[2]|[0]75727651-75727855[0]|[1]75728377-75728473[1]|[2]75729265-75729436[2]|[0]75730241-75730504[2]|[0]75730875-75730964[2]|[0]75731246-75731368[2]|[0]75731812-75731973[2]|[0]75732163-75732239[1]|[2]75733490-75733692[0]|[1]75736051-75736154[2]|[0]75736288-75736386[2]|[0]75736565-75736694[0]|[1]75737322-75737444[0]|[1]75737538-75737644[2]|[0]75739672-75739705[0]|[1]75739880-75740071[0]|[1]75740358-75740461[2]|[0]75740793-75740851[1]|[2]75740982-75741005[1]|[2]75742341-75742489[0]|[1]75742582-75742761[0]|[1]75743713-75743861[2]|[0]75748841-75749045[0]|[1]75750111-75750268[2]|[0]75750680-75750860[0]|[1]75750974-75751111[0]|[1]75752174-75752356[0]|[1]75752446-75752577[0]<==>chr17|+|[0]75602517-75602594[2]|[0]75602830-75602945[1]|[2]75603032-75603077[2]|[0]75603188-75603312[1]|[2]75605504-75605621[2]|[0]75605864-75606021[1]|[2]75610166-75610259[2]|[0]75610900-75610959[2]|[0]75611601-75611658[0]|[1]75611886-75612016[2]|[0]75612798-75612893[2]|[0]75612974-75613209[1]|[2]75613293-75613471[0]|[1]75613705-75613777[1]|[2]75614199-75614360[1]|[2]75614583-75614683[0]|[1]75614773-75614849[2]|[0]75614961-75615042[0]|[1]75615240-75615338[0]|[1]75615503-75615600[2]|[0]75615693-75615884[2]|[0]75616069-75616147[0]|[1]75616312-75616446[0]|[1]75616524-75616785[1]|[2]75616874-75616961[2]|[0]75617085-75617304[0]|[1]75617810-75617922[2]|[0]75618126-75618185[2]|[0]75619143-75619218[0]|[1]75619358-75619476[2]|[0]75619681-75619799[1]|[2]75619879-75620020[2]|[0]75620246-75620357[0]|[1]75620467-75620636[2]|[0]75621031-75621176[1]|[2]75621345-75621408[2]|[0]75621501-75621570[0]|[1]75622004-75622080[2]|[0]75623781-75623854[1]|[2]75623949-75624064[0]|[1]75624175-75624269[2]|[0]75624370-75624447[2]|[0]75624543-75624639[0]|[1]75624771-75624916[2]|[0]75625123-75625238[1]|[2]75625527-75625660[0]|[1]75625844-75625977[2]|[0]75626088-75626228[2]|[0]75626407-75626484[2] atggcagggccacgccccagcccatgggccaggctgctcctggcagccttgatcagcgtcagcctctctgggaccttggcaaaccgctgcaagaaggccccagtgaagagctgcacggagtgtgtccgtgtggataaggactgcgcctactgcacagacgagatgttcagggaccggcgctgcaacacccaggcggagctgctggccgcgggctgccagcgggagagcatcgtggtcatggagagcagcttccaaatcacagaggagacccagattgacaccaccctgcggcgcagccagatgtccccccaaggcctgcgggtccgtctgcggcccggtgaggagcggcattttgagctggaggtgtttgagccactggagagccccgtggacctgtacatcctcatggacttctccaactccatgtccgatgatctggacaacctcaagaagatggggcagaacctggctcgggtcctgagccagctcaccagcgactacactattggatttggcaagtttgtggacaaagtcagcgtcccgcagacggacatgaggcctgagaagctgaaggagccctggcccaacagtgacccccccttctccttcaagaacgtcatcagcctgacagaagatgtggatgagttccggaataaactgcagggagagcggatctcaggcaacctggatgctcctgagggcggcttcgatgccatcctgcagacagctgtgtgcacgagggacattggctggcgcccggacagcacccacctgctggtcttctccaccgagtcagccttccactatgaggctgatggcgccaacgtgctggctggcatcatgagccgcaacgatgaacggtgccacctggacaccacgggcacctacacccagtacaggacacaggactacccgtcggtgcccaccctggtgcgcctgctcgccaagcacaacatcatccccatctttgctgtcaccaactactcctatagctactacgagaagcttcacacctatttccctgtctcctcactgggggtgctgcaggaggactcgtccaacatcgtggagctgctggaggaggccttcaatcggatccgctccaacctggacatccgggccctagacagcccccgaggccttcggacagaggtcacctccaagatgttccagaagacgaggactgggtcctttcacatccggcggggggaagtgggtatataccaggtgcagctgcgggcccttgagcacgtggatgggacgcacgtgtgccagctgccggaggaccagaagggcaacatccatctgaaaccttccttctccgacggcctcaagatggacgcgggcatcatctgtgatgtgtgcacctgcgagctgcaaaaagaggtgcggtcagctcgctgcagcttcaacggagacttcgtgtgcggacagtgtgtgtgcagcgagggctggagtggccagacctgcaactgctccaccggctctctgagtgacattcagccctgcctgcgggagggcgaggacaagccgtgctccggccgtggggagtgccagtgcgggcactgtgtgtgctacggcgaaggccgctacgagggtcagttctgcgagtatgacaacttccagtgtccccgcacttccgggttcctctgcaatgaccgaggacgctgctccatgggccagtgtgtgtgtgagcctggttggacaggcccaagctgtgactgtcccctcagcaatgccacctgcatcgacagcaatgggggcatctgtaatggacgtggccactgtgagtgtggccgctgccactgccaccagcagtcgctctacacggacaccatctgcgagatcaactactcggcgatccacccgggcctctgcgaggacctacgctcctgcgtgcagtgccaggcgtggggcaccggcgagaagaaggggcgcacgtgtgaggaatgcaacttcaaggtcaagatggtggacgagcttaagagagccgaggaggtggtggtgcgctgctccttccgggacgaggatgacgactgcacctacagctacaccatggaaggtgacggcgcccctgggcccaacagcactgtcctggtgcacaagaagaaggactgccctccgggctccttctggtggctcatccccctgctcctcctcctcctgccgctcctggccctgctactgctgctatgctggaagtactgtgcctgctgcaaggcctgcctggcacttctcccgtgctgcaaccgaggtcacatggtgggctttaaggaagaccactacatgctgcgggagaacctgatggcctctgaccacttggacacgcccatgctgcgcagcgggaacctcaagggccgtgacgtggtccgctggaaggtcaccaacaacatgcagcggcctggctttgccactcatgccgccagcatcaaccccacagagctggtgccctacgggctgtccttgcgcctggcccgcctttgcaccgagaacctgctgaagcctgacactcgggagtgcgcccagctgcgccaggaggtggaggagaacctgaacgaggtctacaggcagatctccggtgtacacaagctccagcagaccaagttccggcagcagcccaatgccgggaaaaagcaagaccacaccattgtggacacagtgctgatggcgccccgctcggccaagccggccctgctgaagcttacagagaagcaggtggaacagagggccttccacgacctcaaggtggcccccggctactacaccctcactgcagaccaggacgcccggggcatggtggagttccaggagggcgtggagctggtggacgtacgggtgcccctctttatccggcctgaggatgacgacgagaagcagctgctggtggaggccatcgacgtgcccgcaggcactgccaccctcggccgccgcctggtaaacatcaccatcatcaaggagcaagccagagacgtggtgtcctttgagcagcctgagttctcggtcagccgcggggaccaggtggcccgcatccctgtcatccggcgtgtcctggacggcgggaagtcccaggtctcctaccgcacacaggatggcaccgcgcagggcaaccgggactacatccccgtggagggtgagctgctgttccagcctggggaggcctggaaagagctgcaggtgaagctcctggagctgcaagaagttgactccctcctgcggggccgccaggtccgccgtttccacgtccagctcagcaaccctaagtttggggcccacctgggccagccccactccaccaccatcatcatcagggacccagatgaactggaccggagcttcacgagtcagatgttgtcatcacagccaccccctcacggcgacctgggcgccccgcagaaccccaatgctaaggccgctgggtccaggaagatccatttcaactggctgcccccttctggcaagccaatggggtacagggtaaagtactggattcagggtgactccgaatccgaagcccacctgctcgacagcaaggtgccctcagtggagctcaccaacctgtacccgtattgcgactatgagatgaaggtgtgcgcctacggggctcagggcgagggaccctacagctccctggtgtcctgccgcacccaccaggaagtgcccagcgagccagggcgtctggccttcaatgtcgtctcctccacggtgacccagctgagctgggctgagccggctgagaccaacggtgagatcacagcctacgaggtctgctatggcctggtcaacgatgacaaccgacctattgggcccatgaagaaagtgctggttgacaaccctaagaaccggatgctgcttattgagaaccttcgggagtcccagccctaccgctacacggtgaaggcgcgcaacggggccggctgggggcctgagcgggaggccatcatcaacctggccacccagcccaagaggcccatgtccatccccatcatccctgacatccctatcgtggacgcccagagcggggaggactacgacagcttccttatgtacagcgatgacgttctacgctctccatcgggcagccagaggcccagcgtctccgatgacactgGTTCACAAGTTTTTAAACAGAAACCGGGATCAGCTGGACCCTGCTGTGGTGGAGATGCTTGGCCAGAGCCAGCTCCAGCTGGTGGGCAGCCTGTTCCAGGAGGCAGAGCCCCAGTCCAGGGGAGGGCGAGGCAGACCCACGCTGGCCTCTCGCTTCCAGCAGGCCCTGGAGGACCTCATAGCCCGGCTGGGCAGGAGCCATGTCTATTTCATCCAGTGCCTCACCCCTAACCCTGGAAAGCTTCCAGGCCTCTTTGACGTGGGACATGTGACAGAGCAACTGCACCAGGCAGCCATACTGGAGGCCGTGGGCACCCGCAGTGCCAACTTCCCCGTGCGTGTGCCCTTTGAGGCCTTCCTGGCCAGCTTCCAGGCCCTGGGGTCAGAAGGGCAGGAAGACCTCTCTGACCGGGAGAAGTGTGGTGCCGTCCTGAGCCAGGTGCTGGGGGCCGAATCACCTCTCTATCACCTTGGAGCCACCAAGGTCCTGCTGCAGGAGCAGGGCTGGCAGCGGCTGGAGGAGCTCCGGGACCAGCAGCGCTCCCAGGCCCTGGTCGACCTGCACCGCAGCTTCCACACCTGCATCTCCCGCCAGCGCGTCCTGCCCCGGATGCAGGCTCGCATGCGTGGGTTCCAGGCCAGGAAGCGGTACCTCCGGCGGCGGGCAGCTTTGGGACAGCTGAACACCATCCTGCTGGTGGCCCAGCCCCTGCTCCAGAGGCGGCAGAGACTGCAGCTTGGGCGTTGGCAGGGCTGGCATAGCAGCGAAAGGGCCTTGGAGAGAGTGCCAAGCATGGAGCTGGGGCGCTTGGAGATCCCGGCTGAGCTGGCCGTCATGCTGAAGACGGCGGAAAGCCATCGGGACGCCCTGGCTGGGAGCATCACCGAGTGCCTGCCGCCTGAGGTTCCTGCCCGGCCCAGCCTGACTCTCCCAGCAGACATTGACCTGTTCCCTTTCTCCAGCTTCGTCGCCATCGGCTTTCAGGAACCGTCCCTGCCCAGGCCAGGGCAGCCACTGGCGAAGCCCCTAACCCAGCTGGATGGAGACAACCCTCAGCGTGCCCTGGACATCAACAAAGTGATGCTGCGGCTCCTGGGGGACGGATCCCTGGAGTCCTGGCAGAGGCAGATCATGGGCGCATACCTGGTGCGGCAGGGGCAGTGCCGGCCAGGGCTGCGGAATGAGCTCTTTAGCCAGCTGGTGGCCCAGCTATGGCAGAACCCAGATGAACAGCAGAGCCAGCGTGGCTGGGCCCTCATGGCTGTTTTGCTCAGCGCCTTTCCCCCACTGCCTGTCCTACAGAAGCCACTGCTCAAGTTCGTGTCTGACCAGGCCCCCAGGGGCATGGCAGCGCTGTGCCAGCACAAGCTGCTGGGGGCCTTGGAGCAGTCGCAGCTGGCCTCGGGGGCCACTCGGGCCCACCCCCCGACCCAGCTGGAGTGGCTGGCCGGATGGCGGCGGGGCCGCATGGCGCTGGATGTGTTCACCTTCAGCGAGGAGTGCTACTCGGCCGAGGTGGAGTCTTGGACCACCGGGGAGCAGCTGGCTGGGTGGATCCTGCAGAGCAGAGGCCTGGAGGCGCCTCCCCGGGGCTGGTCTGTGTCACTGCACTCCAGGGACGCATGGCAGGACTTGGCTGGCTGCGACTTTGTGCTGGACCTGATCAGCCAGACTGAGGACCTGGGGGACCCAGCTCGCCCCCGCAGCTACCCCATCACTCCTCTTGGCTCAGCCGAGGCCATTCCCCTTGCCCCTGGCATTCAGGCCCCCTCACTGCCCCCAGGACCCCCTCCAGGTCCAGCCCCAACGCTGCCCAGCAGGGACCACACAGGGGAGGTCCAGAGGTCAGGGAGCCTGGACGGCTTCCTGGACCAGATCTTCCAGCCAGTGATATCCTCCGGCCTCAGCGATCTGGAACAAAGCTGGGCTCTGAGCAGCCGCATGAAGGGAGGGGGCGCCATTGGGCCCACACAGCAGGGCTACCCCATGGTGTACCCAGGAATGATTCAGATGCCTGCATACCAGCCAGGCATGGTCCCTGCACCCATGCCCATGATGCCAGCAATGGGCACAGTCCCTGCCATGCCAGCCATGGTGGTGCCGCCGCAGCCACCGCTTCCCAGCCTGGATGCAGGGCAGCTGGCCGTCCAGCAGCAGAACTTTATCCAGCAGCAGGCGCTAATCCTGGCCCAGCAGATGACAGCCCAGGCCATGTCCCTGTCCCTGGAGCAGCAGATGCAGCAGCGGCAGCAGCAGGCTCGGGCCTCCGAGGCTGCGTCCCAGGCCTCACCCTCAGCCGTCACCTCCAAGCCCAGGAAGCCCCCCACACCCCCGGAGAAGCCACAGCGTGACCTGGGATCAGAGGGTGGCTGCCTGAGGGAGACCTCCGAGGAGGCTGAAGACAGGCCCTATCAGCCCAAGAGCTTCCAGCAGAAACGGAACTATTTCCAGAGGATGGGGCAGCCACAGATCACAGTGAGGACGATGAAGCCCCCGGCCAAGGTCCACATCCCCCAGGGGGAAGCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAGCAAGAAGTGGAAACAAGAGCAGTGCCGTCCCCTCCTCCTCCCCCCATCGTGAAGAAGCCATTGAAGCAAGGTGGGGCCAAAGCTCCAAAAGAGGCTGAGGCTGAGCCAGCCAAGGAGACAGCGGCCAAGGGCCATGGCCAAGGGCCAGCCCAAGGCAGGGGGACTGTGGTGCGCAGCTCAGACTCCAAGCCCAAGCGGCCACAACCCAGCAGGGAAATTGGCAACATCATCCGCATGTACCAGAGCCGCCCGGGCCCCGTGCCTGTGCCCGTGCAGCCATCCAGGCCTCCCAAAGCTTTCCTGAGGAAAATCGACCCCAAGGACGAGGCTCTGGCCAAGCTGGGTATCAACGGTGCCCACTCGTCCCCGCCGATGCTGTCCCCCAGCCCAGGAAAGGGCCCCCCGCCAGCTGTGGCTCCTCGACCCAAGGCCCCGCTACAGCTTGGGCCCTCTAGCTCCATCAAGGAAAAGCAGGGGCCCCTTCTGGACCTGTTTGGCCAGAAGCTGCCTATTGCCCACACACCCCCACCTCCACCAGCGCCACCACTGCCTCTGCCCGAGGACCCAGGGACCCTTTCAGCAGAGCGTCGTTGCTTGACACAGCCCGTGGAGGACCAGGGGGTCTCCACCCAGCTACTCGCGCCCTCTGGCAGCGTGTGCTTCTCCTACACCGGCACGCCCTGGAAGTTGTTCCTACGCAAGGAGGTGTTCTACCCACGGGAGAACTTCAGCCATCCCTACTACCTGAGGCTCCTCTGTGAGCAGATCCTACGGGACACCTTCTCCGAGTCCTGTATCCGGATTTCCCAGAATGAGCGGCGGAAAATGAAAGACCTGCTGGGAGGCTTGGAGGTGGACCTGGATTCTCTCACCACCACCGAAGACAGCGTCAAGAAGCGCATCGTGGTGGCCGCTCGGGACAACTGGGCCAATTACTTCTCCCGCTTCTTTCCTGTCTCGGGCGAGAGTGGCAGCGACGTGCAGCTGTTAGCCGTGTCCCACCGTGGGCTGCGACTGCTCAAGGTGACCCAAGGCCCCGGCCTCCGCCCCGACCAGCTGAAGATTCTCTGCTCATACAGCTTTGCGGAGGTGCTGGGTGTGGAGTGCCGGGGCGGCTCCACCCTGGAGCTGTCACTGAAGAGCGAGCAGCTGGTGCTGCACACAGCCCGGGCAAGGGCCATCGAGGCGCTGGTTGAGCTATTCCTGAATGAGCTTAAGAAGGACTCCGGCTATGTCATCGCCCTGCGCAGCTACATCACTGACAACTGCAGCCTCCTCAGCTTCCACCGTGGGGACCTCATCAAGCTGCTGCCGGTGGCCACCCTGGAGCCAGGCTGGCAGTTTGGCTCTGCCGGGGGCCGTTCCGGACTCTTTCCTGCCGACATAGTGCAGCCGGCTGCCGCTCCCGACTTTTCCTTCTCCAAGGAGCAGAGGAGTGGCTGGCACAAGGGTCAGCTGTCCAACGGGGAACCAGGGCTGGCTCGGTGGGACAGGGCCTCAGAGCGCCCTGCCCACCCTTGGAGCCAGGCACACAGTGACGACTCGGAGGCCACCAGCCTGTCCTCTGTGGCCTATGCCTTTCTGCCCGACTCCCACAGCTACACCATGCAGGAATTCGCCCGGCGTTACTTCCGGAGGTCCCAGGCCTTGCTGGGCCAGACTGATGGAGGTGCCGCAGGAAAGGACACGGACAGCCTGGTGCAGTACACCAAGGCTCCCATCCAGGAGTCGCTCCTCAGCCTCAGTGATGATGTGAGCAAGCTGGCTGTAGCCAGCTTCCTGGCCCTGATGCGGTTTATGGGTGACCAGTCCAAGCCCCGGGGCAAGGATGAGATGGATCTGCTCTATGAACTGCTGAAGCTGTGCCAGCAGGAGAAGCTGAGGGATGAGATTTACTGCCAGGTTATCAAGCAGGTCACGGGACACCCCCGGCCGGAACACTGCACTCGAGGCTGGAGCTTCCTCAGCCTTCTCACAGGCTTCTTCCCCCCGTCGACCAGGCTGATGCCCTACCTGACCAAGTTTCTGCAGGATTCAGGCCCCAGCCAAGAGCTGGCCCGGAGCAGCCAGGAGCACCTCCAGCGCACAGTCAAATATGGGGGGCGCCGGCGGATGCCCCCACCGGGTGAAATGAAGGCTTTCCTGAAAGGACAAGCGATTCGCCTGCTTCTTATTCACCTGCCGGGGGGTGTGGATTATAGGACGAATATCCAGACTTTCACAGTAGCAGCAGAAGTGCAGGAGGAGCTGTGCCGGCAAATGGGTATCACGGAGCCTCAGGAAGTGCAGGAATTCGCCCTCTTCCTCATCAAAGAGAAGAGCCAGCTGGTGCGGCCCCTGCAGCCCGCCGAATACCTCAACAGCGTGGTAGTGGACCAGGACGTGAGCCTGCACAGCCGGCGGCTCCACTGGGAGACCCCACTGCACTTCGATAACTCCACCTACATCAGCACCCACTACAGCCAGGTGCTGTGGGACTACCTTCAGGGGAAGCTGCCAGTCAGCGCCAAGGCAGACGCGCAGCTCGCCAGGCTGGCCGCCCTGCAGCACCTCAGCAAGGCCAACAGGAATACCCCCTCAGGGCAGGACCTGCTAGCTTACGTGCCAAAGCAGCTGCAACGGCAGGTGAACACGGCCTCCATCAAGAACCTGATGGGTCAGGAGCTGAGACGGCTGGAAGGACACAGCCCCCAGGAAGCACAGATCAGCTTCATTGAGGCCATGAGCCAGCTGCCCCTCTTCGGCTACACCGTCTATGGGGTGCTGCGAGTGAGCATGCAGGCCCTGTCCGGACCCACTCTCCTGGGGCTCAACCGCCAGCATCTCATCCTCATGGACCCCAGCTCCCAGAGCCTGTACTGCCGCATTGCCCTGAAGAGCCTGCAGCGGCTCCACCTGCTAAGCCCTCTGGAGGAGAAGGGGCCCCCTGGCCTGGAAGTCAACTATGGCTCAGCTGACAACCCCCAGACCATCTGGTTTGAGCTGCCACAGGCCCAGGAGCTGCTATACACCACTGTCTTCCTGATAGACAGCAGTGCCTCTTGCACTGAGTGGCCCAGCATCAACTGA MAGPRPSPWARLLLAALISVSLSGTLANRCKKAPVKSCTECVRVDKDCAYCTDEMFRDRRCNTQAELLAAGCQRESIVVMESSFQITEETQIDTTLRRSQMSPQGLRVRLRPGEERHFELEVFEPLESPVDLYILMDFSNSMSDDLDNLKKMGQNLARVLSQLTSDYTIGFGKFVDKVSVPQTDMRPEKLKEPWPNSDPPFSFKNVISLTEDVDEFRNKLQGERISGNLDAPEGGFDAILQTAVCTRDIGWRPDSTHLLVFSTESAFHYEADGANVLAGIMSRNDERCHLDTTGTYTQYRTQDYPSVPTLVRLLAKHNIIPIFAVTNYSYSYYEKLHTYFPVSSLGVLQEDSSNIVELLEEAFNRIRSNLDIRALDSPRGLRTEVTSKMFQKTRTGSFHIRRGEVGIYQVQLRALEHVDGTHVCQLPEDQKGNIHLKPSFSDGLKMDAGIICDVCTCELQKEVRSARCSFNGDFVCGQCVCSEGWSGQTCNCSTGSLSDIQPCLREGEDKPCSGRGECQCGHCVCYGEGRYEGQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSCDCPLSNATCIDSNGGICNGRGHCECGRCHCHQQSLYTDTICEINYSAIHPGLCEDLRSCVQCQAWGTGEKKGRTCEECNFKVKMVDELKRAEEVVVRCSFRDEDDDCTYSYTMEGDGAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALLPCCNRGHMVGFKEDHYMLRENLMASDHLDTPMLRSGNLKGRDVVRWKVTNNMQRPGFATHAASINPTELVPYGLSLRLARLCTENLLKPDTRECAQLRQEVEENLNEVYRQISGVHKLQQTKFRQQPNAGKKQDHTIVDTVLMAPRSAKPALLKLTEKQVEQRAFHDLKVAPGYYTLTADQDARGMVEFQEGVELVDVRVPLFIRPEDDDEKQLLVEAIDVPAGTATLGRRLVNITIIKEQARDVVSFEQPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGEAWKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPKFGAHLGQPHSTTIIIRDPDELDRSFTSQMLSSQPPPHGDLGAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVLRSPSGSQRPSVSDDTGSQVFKQKPGSAGPCCGGDAWPEPAPAGGQPVPGGRAPVQGRARQTHAGLSLPAGPGGPHSPAGQEPCLFHPVPHP*PWKASRPL*RGTCDRATAPGSHTGGRGHPQCQLPRACAL*GLPGQLPGPGVRRAGRPL*PGEVWCRPEPGAGGRITSLSPWSHQGPAAGAGLAAAGGAPGPAALPGPGRPAPQLPHLHLPPARPAPDAGSHAWVPGQEAVPPAAGSFGTAEHHPAGGPAPAPEAAETAAWALAGLA*QRKGLGESAKHGAGALGDPG*AGRHAEDGGKPSGRPGWEHHRVPAA*GSCPAQPDSPSRH*PVPFLQLRRHRLSGTVPAQARAATGEAPNPAGWRQPSACPGHQQSDAAAPGGRIPGVLAEADHGRIPGAAGAVPARAAE*AL*PAGGPAMAEPR*TAEPAWLGPHGCFAQRLSPTACPTEATAQVRV*PGPQGHGSAVPAQAAGGLGAVAAGLGGHSGPPPDPAGVAGRMAAGPHGAGCVHLQRGVLLGRGGVLDHRGAAGWVDPAEQRPGGASPGLVCVTALQGRMAGLGWLRLCAGPDQPD*GPGGPSSPPQLPHHSSWLSRGHSPCPWHSGPLTAPRTPSRSSPNAAQQGPHRGGPEVREPGRLPGPDLPASDILRPQRSGTKLGSEQPHEGRGRHWAHTAGLPHGVPRNDSDACIPARHGPCTHAHDASNGHSPCHASHGGAAAATASQPGCRAAGRPAAELYPAAGANPGPADDSPGHVPVPGAADAAAAAAGSGLRGCVPGLTLSRHLQAQEAPHTPGEATA*PGIRGWLPEGDLRGG*RQALSAQELPAETELFPEDGAATDHSEDDEAPGQGPHPPGGSAGGGGGGGGGGGAGGARSGNKSSAVPSSSPHREEAIEARWGQSSKRG*G*ASQGDSGQGPWPRASPRQGDCGAQLRLQAQAATTQQGNWQHHPHVPEPPGPRACARAAIQASQSFPEENRPQGRGSGQAGYQRCPLVPADAVPQPRKGPPASCGSSTQGPATAWAL*LHQGKAGAPSGPVWPEAAYCPHTPTSTSATTASARGPRDPFSRASLLDTARGGPGGLHPATRALWQRVLLLHRHALEVVPTQGGVLPTGELQPSLLPEAPL*ADPTGHLLRVLYPDFPE*AAENERPAGRLGGGPGFSHHHRRQRQEAHRGGRSGQLGQLLLPLLSCLGREWQRRAAVSRVPPWAATAQGDPRPRPPPRPAEDSLLIQLCGGAGCGVPGRLHPGAVTEERAAGAAHSPGKGHRGAG*AIPE*A*EGLRLCHRPAQLHH*QLQPPQLPPWGPHQAAAGGHPGARLAVWLCRGPFRTLSCRHSAAGCRSRLFLLQGAEEWLAQGSAVQRGTRAGSVGQGLRAPCPPLEPGTQ*RLGGHQPVLCGLCLSARLPQLHHAGIRPALLPEVPGLAGPD*WRCRRKGHGQPGAVHQGSHPGVAPQPQ**CEQAGCSQLPGPDAVYG*PVQAPGQG*DGSAL*TAEAVPAGEAEG*DLLPGYQAGHGTPPAGTLHSRLELPQPSHRLLPPVDQADALPDQVSAGFRPQPRAGPEQPGAPPAHSQIWGAPADAPTG*NEGFPERTSDSPASYSPAGGCGL*DEYPDFHSSSRSAGGAVPANGYHGASGSAGIRPLPHQREEPAGAAPAARRIPQQRGSGPGREPAQPAAPLGDPTALR*LHLHQHPLQPGAVGLPSGEAASQRQGRRAARQAGRPAAPQQGQQEYPLRAGPASLRAKAAATAGEHGLHQEPDGSGAETAGRTQPPGSTDQLH*GHEPAAPLRLHRLWGAASEHAGPVRTHSPGAQPPASHPHGPQLPEPVLPHCPEEPAAAPPAKPSGGEGAPWPGSQLWLS*QPPDHLV*AATGPGAAIHHCLPDRQQCLLH*VAQHQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 73717692|73717692|73717692 FALSE|FALSE|FALSE 73620450|73620623|73620255 FALSE|FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29607 ZNF8-DT::ENSG00000267299 ENSG00000268516.4::ENSG00000267299.1 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 712 FALSE NA FALSE NA ZNF8-DT ENSG00000268516.4 lncRNA - - chr19:58257270-58278830:- chr19:58278523:- chr19:58768636-58790196:- chr19:58789889:- ENSG00000267299 ENSG00000267299.1 lncRNA + + chr19:6109322-6125797:+ chr19:6125534:+ chr19:6109333-6125808:+ chr19:6125545:+ chr19:58263857 chr19:6113205 NA NA chr19:58775223 chr19:6113216 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 50 40 50 40 ONLY_REF_SPLICE YES_LDAS 0.9801 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29608 RERE::RPL22 ENSG00000142599.20::ENSG00000116251.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 718 TRUE 1258 TRUE 489 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8817160:- chr1:8412457-8908980:- chr1:8877219:- RPL22 ENSG00000116251.11 protein_coding - - chr1:6185020-6209389:- chr1:6197756:- chr1:6245080-6269449:- chr1:6257816:- chr1:8731201,chr1:8731203 chr1:6198373,chr1:6198372 NA NA chr1:8791260,chr1:8791262 chr1:6258433,chr1:6258432 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RERE:Oncogene"];["RPL22:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:2.14Mb] 49 28 49 23.25 ONLY_REF_SPLICE YES_LDAS 0.7868 GT 1.8295 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ribosomal protein L22 (EAP) 1 AML, CML leukaemia_lymphoma TSG, fusion translocation 29610 ZNRD2-DT::ERP44 ENSG00000260233.4::ENSG00000023318.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 713 FALSE NA FALSE NA ZNRD2-DT ENSG00000260233.4 lncRNA - - chr11:65568482-65570458:- chr11:65569696:- chr11:65335953-65337929:- chr11:65337167:- ERP44 ENSG00000023318.9 protein_coding - - chr9:99979185-100099052:- chr9:100060172:- chr9:102741467-102861334:- chr9:102822454:- chr11:65568493,chr11:65568496 chr9:100083058,chr9:100083058 NA NA chr11:65335964,chr11:65335967 chr9:102845340,chr9:102845340 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 36 16 36 16 INCL_NON_REF_SPLICE YES_LDAS 0.5662 GT 1.7465 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29611 CNPY2::SMARCC2 ENSG00000257727.6::ENSG00000139613.12 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 714 FALSE NA FALSE NA CNPY2 ENSG00000257727.6 protein_coding - - chr12:56309842-56316119:- chr12:56310310:- chr12:56703626-56709903:- chr12:56704094:- SMARCC2 ENSG00000139613.12 protein_coding - - chr12:56162359-56189567:- chr12:56184244:- chr12:56556143-56583351:- chr12:56578028:- chr12:56310266,chr12:56310270 chr12:56184452,chr12:56184453 NA NA chr12:56704050,chr12:56704054 chr12:56578236,chr12:56578237 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr12:0.12Mb] 22 7 22 5.44 ONLY_REF_SPLICE YES_LDAS 0.2988 GT 1.7465 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29614 CCNF::ABCA17P ENSG00000162063.13::ENSG00000238098.9 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CCNF ENSG00000162063.13 protein_coding + + chr16:2429394-2458854:+ chr16:2443800:+ chr16:2479395-2508855:+ chr16:2493801:+ ABCA17P ENSG00000238098.9 transcribed_unitary_pseudogene + + chr16:2339150-2426699:+ chr16:2386104:+ chr16:2389151-2476700:+ chr16:2436105:+ chr16:2444600,chr16:2444601 chr16:2380877,chr16:2380872 NA NA chr16:2494601,chr16:2494602 chr16:2430878,chr16:2430873 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCNF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.00Mb];LOCAL_REARRANGEMENT:+:[2695] 15 10 15 10 ONLY_REF_SPLICE YES_LDAS 0.2722 GT 1.8295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29620 RERE::RPL22 ENSG00000142599.20::ENSG00000116251.11 MKN74 SRR8615516 SRR8652119 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 719 TRUE 1258 TRUE 489 RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8792404:- chr1:8412457-8908980:- chr1:8852463:- RPL22 ENSG00000116251.11 protein_coding - - chr1:6185020-6209389:- chr1:6197756:- chr1:6245080-6269449:- chr1:6257816:- chr1:8731201,chr1:8731203 chr1:6198373,chr1:6198372 NA NA chr1:8791260,chr1:8791262 chr1:6258433,chr1:6258432 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RERE:Oncogene"];["RPL22:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:2.14Mb] 5 33 5 9.75 ONLY_REF_SPLICE YES_LDAS 0.1606 GT 1.7819 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ribosomal protein L22 (EAP) 1 AML, CML leukaemia_lymphoma TSG, fusion translocation 29623 PARVA::USP47 ENSG00000197702.14::ENSG00000170242.19 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 724 FALSE NA FALSE NA PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12377783:+ chr11:12399110-12556903:+ chr11:12399330:+ USP47 ENSG00000170242.19 protein_coding + + chr11:11841423-11961887:+ chr11:11942335:+ chr11:11862970-11983434:+ chr11:11963882:+ chr11:12427350,chr11:12427347 chr11:11940781,chr11:11940775 NA NA chr11:12448897,chr11:12448894 chr11:11962328,chr11:11962322 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH-PARTIAL|97-136~|1.2e-22^CH_2-PARTIAL|101-136~|0.0015^HetE-N-PARTIAL|101-136~|2.3e-06^MGMT_N-PARTIAL|101-136~|1.1^CAMSAP_CH-PARTIAL|116-136~|8.7e-06 none ["TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.42Mb] 57 19 57 19 ONLY_REF_SPLICE YES_LDAS 0.7363 GT 1.4295 AG 1.7819 ENST00000334956.15 1-136 ENST00000339865.9 2110-3864 chr11|+|[0]12377648-12377783[0]<==>chr11|+|[0]11942335-11943112[0]|[1]11947945-11948120[2]|[0]11948478-11948558[2]|[0]11949889-11950004[1]|[2]11950364-11950482[0]|[1]11952741-11952871[2]|[0]11954897-11954944[2]|[0]11955034-11955164[1]|[2]11956001-11956175[2] atggccacctccccgcagaagtcgccttctgtccccaagtctcccactcccaagtcgcccccgtcccgcaagaaagatgattccttcttggggaaactcggagggaccctggcccggaggaagaaagccaaggaggGTGTTTGTTGAAAGCTCCGAGACTTTGGATTACCAGATGGCCTTTGCAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGCTACCTGAACAATCCCCAGTATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGAGGCGATTCTGGTAATGTGGATGATGACTGTGAAAGAGTCAAAGGACCTGTAGGAAGCCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAAAACTCAAAAGCTTGTCACTGCAGCAACAGCAGGATGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGTGACTTTGAAAACATCGAATCACCTCTCAATGAGAGGGACTCTTCAGCATCAGTGGATAATAGAGAACTTGAACAGCATATTCAGACTTCTGATCCAGAAAATTTTCAGTCTGAAGAACGATCAGACTCAGATGTGAATAATGACAGGAGTACAAGTTCAGTGGACAGTGATATTCTTAGCTCCAGTCATAGCAGTGATACTTTGTGCAATGCAGACAATGCTCAGATCCCTTTGGCTAATGGACTTGACTCTCACAGTATCACAAGTAGTAGAAGAACGAAAGCAAATGAAGGGAAAAAAGAAACATGGGATACAGCAGAAGAAGACTCTGGAACTGATAGTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATGCAGTACATGTATTTCAAAGCTGAACCTTATGCTGCAGATGAAGGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCAGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGGTCTTTCGAGTGTATGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCTGATGACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTATACCAGCTTTTGGTCAATGAACAAGAGCCATGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGCAATCAAAAGAGGAATTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAACTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGTAGAGAAGATGAAGTCCATGTCACAGCTTGCAGTTTTGTCAAGACGGTGGAAGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTATTGGAAAGCAGTAGTGTGGACGAATTGCGAGAGAAGCTTAGTGAAATCAGTGGGATTCCTTTGGATGATATTGAATTTGCTAAGGGTAGAGGAACATTTCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTAGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCGGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAATTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACTGGACATCGTGTAACATACTCACCTCGTAAAGAGAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGACTGA MATSPQKSPSVPKSPTPKSPPSRKKDDSFLGKLGGTLARRKKAKEGVC*KLRDFGLPDGLCRLSFMETPGSACKYNQIICFAT*TIPSILFQKDSIPESWRRFW*CG**L*KSQRTCRKPKVCGSYSRRKH*KTQKLVTAATAGWR*WGQQQKY*DK*L*KHRITSQ*EGLFSISG**RT*TAYSDF*SRKFSV*RTIRLRCE**QEYKFSGQ*YS*LQS*Q*YFVQCRQCSDPFG*WT*LSQYHK**KNESK*REKRNMGYSRRRLWN***I**EWQE*GRNAVHVFQS*TLCCR*RFWGRT*MVDGAC**KNYSGSFQTTFRALCWSFVLSLQGLSSVCQQSRV*ERPAE*DTFIIF**Q*DYN*TGEST*KRRIQS*SIPAFGQ*TRAMQVSARCCVC*RNDCTAIKRGINSSAQGAMWFRAQY*QVSSKEKNMEESWHCLFGLSYL*RRY*YFQQLGGFP*SS*WGREDEVHVTACSFVKTVEAFRDEVGSLPGGCIGKQ*CGRIAREA**NQWDSFG*Y*IC*G*RNISL*YFCP*YSSGFRLES*SFYPECLASLYL**WCGHIL*G*NRRINGIDR*AKK*TDEKRKQSTPEDWTSCNILTS*RESTKNISGWSTK*RSDSRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 12399330|12399330 TRUE|TRUE 11970025|11974288 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29624 UBE2V2::PRKAA1 ENSG00000169139.12::ENSG00000132356.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 736 TRUE 1277 TRUE 498 UBE2V2 ENSG00000169139.12 protein_coding + + chr8:48008415-48064708:+ chr8:48008470:+ chr8:48920975-48977268:+ chr8:48921030:+ PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40769503:- chr5:40759491-40798476:- chr5:40769605:- chr8:48008694,chr8:48008695 chr5:40769959,chr5:40769958 NA NA chr8:48921254,chr8:48921255 chr5:40770061,chr5:40770060 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr5] 55 0 55 0 ONLY_REF_SPLICE YES_LDAS 0.5328 GT 1.9086 AG 1.9086 ENST00000518360.5 1-29 ENST00000397128.7 509-1680 chr8|+|[2]48008442-48008470[0]<==>chr5|-|[2]40762778-40763022[1]|[0]40764514-40764640[0]|[2]40764752-40765238[2]|[1]40767466-40767690[2]|[1]40769416-40769503[1] gctgcaggagaagatggcggtctccacagGTCTTTCAAACATGATGTCAGATGGTGAATTTTTAAGAACAAGTTGTGGCTCACCCAACTATGCTGCACCAGAAGTAATTTCAGGAAGATTGTATGCAGGCCCAGAGGTAGATATATGGAGCAGTGGGGTTATTCTCTATGCTTTATTATGTGGAACCCTTCCATTTGATGATGACCATGTGCCAACTCTTTTTAAGAAGATATGTGATGGGATCTTCTATACCCCTCAATATTTAAATCCTTCTGTGATTAGCCTTTTGAAACATATGCTGCAGGTGGATCCCATGAAGAGGGCCACAATCAAAGATATCAGGGAACATGAATGGTTTAAACAGGACCTTCCAAAATATCTCTTTCCTGAGGATCCATCATATAGTTCAACCATGATTGATGATGAAGCCTTAAAAGAAGTATGTGAAAAGTTTGAGTGCTCAGAAGAGGAAGTTCTCAGCTGTCTTTACAACAGAAATCACCAGGATCCTTTGGCAGTTGCCTACCATCTCATAATAGATAACAGGAGAATAATGAATGAAGCCAAAGATTTCTATTTGGCGACAAGCCCACCTGATTCTTTTCTTGATGATCATCACCTGACTCGGCCCCATCCTGAAAGAGTACCATTCTTGGTTGCTGAAACACCAAGGGCACGCCATACCCTTGATGAATTAAATCCACAGAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTAGGAATTAGAAGTCAAAGTCGACCAAATGATATTATGGCAGAAGTATGTAGAGCAATCAAACAATTGGATTATGAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATGATGAAATTACAGAAGCCAAATCAGGGACTGCTACTCCACAGAGATCGGGATCAGTTAGCAACTATCGATCTTGCCAAAGGAGTGATTCAGATGCTGAGGCTCAAGGAAAATCCTCAGAAGTTTCTCTTACCTCATCTGTGACCTCACTTGACTCTTCTCCTGTTGACCTAACTCCAAGACCTGGAAGTCACACAATAGAATTTTTTGAGATGTGTGCAAATCTAATTAAAATTCTTGCACAATAA LQEKMAVSTGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTYSKMSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSVSNYRSCQRSDSDAEAQGKSSEVSLTSSVTSLDSSPVDLTPRPGSHTIEFFEMCANLIKILAQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29625 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 722 TRUE 1262 TRUE 490 LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75444582,chr10:75444582,chr10:75444583 chr10:74417999,chr10:74418003,chr10:74417997 NA NA chr10:77204340,chr10:77204340,chr10:77204341 chr10:76177757,chr10:76177761,chr10:76177755 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRR_9-PARTIAL|24-131~|2.8e-16^LRR_4|34-67|2.1e-08^LRR_8|34-65|1.5e-06^LRR_1|34-45|0.024^LRR_6|34-41|0.12^LRR_6|53-68|0.0021^LRR_1|54-67|0.0017^LRR_8|72-112|4.4e-05^LRR_4|75-112|1.5e-07^DHU1_N|75-110|0.0027^LRR_1|77-91|0.027^LRR_6|77-89|0.059^LRR_1|104-112|2.4^DHU1_N-PARTIAL|129-131~|0.0032 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 44 34 44 30.54 ONLY_REF_SPLICE YES_LDAS 0.7222 GT 1.8892 AG 1.7232 ENST00000611255.5 1-131 ENST00000541550.6 505-1071 chr10|+|[0]75431725-75431754[2]|[0]75438394-75438494[1]<==>chr10|+|[0]74525256-74525426[2]|[0]74589282-74589317[2]|[0]74600379-74600493[0]|[1]74670183-74670269[0]|[1]74686699-74686820[2]|[0]74708321-74708356[2] atggccgggctcgtggtgcgtggaactcaagtgtcctacataggccaggactgcagagaaattccagagcaccttggcagggactgtggacatttcgcaaagaggcttgatctgagctttaaccttctgagGGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACAGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAGAAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTACCCTGCCTCAGCCTCCCAAGTAGCTGGCGACTACAGGTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGA MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLRAFFLQFPQSQY*RWLTMLLKTTGFSL*IYLHRLLASSTRNH**KLCLMLIYFLEMRQKLPLLLESKALRLKTLKR*PKRHKPCQR*TQRGSES*SSPKGEMTL*WLQKVKSLLLLSWIKTRKKLLIPMELEMHLLEMESCSVTRLECSGMISAHCNLCLSGSSDYPASASQVAGDYRFSVSTGL*QAS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29627 TMEM259::LSM7 ENSG00000182087.14::ENSG00000130332.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE FALSE TRUE 726 FALSE NA FALSE NA TMEM259 ENSG00000182087.14 protein_coding - - chr19:1009648-1021179:- chr19:1014192:- chr19:1009647-1021178:- chr19:1014191:- LSM7 ENSG00000130332.15 protein_coding - - chr19:2321520-2328611:- chr19:2321822:- chr19:2321519-2328610:- chr19:2321821:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Membralin|35-402|6.1e-164 LSM|12-32|9.2e-08 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:1.30Mb] 36 10 36 10 ONLY_REF_SPLICE YES_LDAS 0.4457 GT 1.8323 AG 1.8892 ENST00000593068.7 1-507 ENST00000587502.2 8-150 chr19|-|[2]1014192-1014473[0]|[2]1020772-1020996[0]<==>chr19|-|[2]2321680-2321822[1] atgtcggagcacgtggagcccgcagctccggggcccgggcccaacggcggcggcggcggcccggcccccgcgcgcgggcctcgcacccccaatctcaaccccaaccccctcatcaacgtgcgcgaccggctcttccacgcgctgttcttcaagatggctgtcacctattcgcggctcttcccgcccgccttccgccgtctcttcgagttcttcgtgctgctcaaggccctgtttgtgctcttcgtcctggcctacatccacatcgtcttctcccgctcgcccatcaactgcctggagcatgtgcgtgacaagtggccgcgtgagggcatcctgcgtgtggaagtgcggcacaactcgagccgcgcgcccgtcttcctacagttctgtgacagcggcggccgcgggagcttcccgggcctggccgtggaaccaggcagcaacctggacatggaagatgaggaggaggaagagctgaccatggagatgtttgggaacagctccatcaagACCCTGACGACCAGTACAAGCTCACGGAGGACACCCGGCAGCTGGGCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGACGGCATGGAGGCCATCCCCAACCCCTTCATCCAGCAGCAGGACGCCTAG MSEHVEPAAPGPGPNGGGGGPAPARGPRTPNLNPNPLINVRDRLFHALFFKMAVTYSRLFPPAFRRLFEFFVLLKALFVLFVLAYIHIVFSRSPINCLEHVRDKWPREGILRVEVRHNSSRAPVFLQFCDSGGRGSFPGLAVEPGSNLDMEDEEEEELTMEMFGNSSIKTLTTSTSSRRTPGSWASWCAGARPWC*SARRTAWRPSPTPSSSSRTP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29631 AGO3::FLYWCH1 ENSG00000126070.20::ENSG00000059122.17 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGO3 ENSG00000126070.20 protein_coding + + chr1:35930718-36072500:+ chr1:35931445:+ chr1:36396319-36538101:+ chr1:36397046:+ FLYWCH1 ENSG00000059122.17 protein_coding + + chr16:2911931-2951208:+ chr16:2929613:+ chr16:2961932-3001209:+ chr16:2979614:+ chr1:35936322,chr1:35936320 chr16:2921048,chr16:2921046 NA NA chr1:36401923,chr1:36401921 chr16:2971049,chr16:2971047 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr16] 31 18 31 18 ONLY_REF_SPLICE YES_LDAS 0.4747 GT 1.9329 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29634 LINC03009::SRRM3 ENSG00000290873.1::ENSG00000177679.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 729 FALSE NA FALSE NA LINC03009 ENSG00000290873.1 lncRNA + + chr7:76549360-76627982:+ chr7:76551522:+ chr7:76178677-76257299:+ chr7:76180839:+ SRRM3 ENSG00000177679.16 protein_coding + + chr7:76201896-76287288:+ chr7:76235028:+ chr7:75831214-75916605:+ chr7:75864346:+ chr7:76558561,chr7:76558558 chr7:76217620,chr7:76217614 NA NA chr7:76187878,chr7:76187875 chr7:75846938,chr7:75846932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 23 17 22.3 16.24 ONLY_REF_SPLICE YES_LDAS 0.3733 GT 1.9219 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29636 LRMDA::ADK ENSG00000148655.16::ENSG00000156110.15 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 723 TRUE 1262 TRUE 490 LRMDA ENSG00000148655.16 protein_coding + + chr10:75431624-76560168:+ chr10:75438494:+ chr10:77191382-78319926:+ chr10:77198252:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75444582,chr10:75444582,chr10:75444583 chr10:74417999,chr10:74418003,chr10:74417997 NA NA chr10:77204340,chr10:77204340,chr10:77204341 chr10:76177757,chr10:76177761,chr10:76177755 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LRR_9-PARTIAL|24-131~|2.8e-16^LRR_4|34-67|2.1e-08^LRR_8|34-65|1.5e-06^LRR_1|34-45|0.024^LRR_6|34-41|0.12^LRR_6|53-68|0.0021^LRR_1|54-67|0.0017^LRR_8|72-112|4.4e-05^LRR_4|75-112|1.5e-07^DHU1_N|75-110|0.0027^LRR_1|77-91|0.027^LRR_6|77-89|0.059^LRR_1|104-112|2.4^DHU1_N-PARTIAL|129-131~|0.0032 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 21 14 21 3.46 ONLY_REF_SPLICE YES_LDAS 0.2369 GT 1.8892 AG 1.9656 ENST00000611255.5 1-131 ENST00000541550.6 676-1071 chr10|+|[0]75431725-75431754[2]|[0]75438394-75438494[1]<==>chr10|+|[0]74589282-74589317[2]|[0]74600379-74600493[0]|[1]74670183-74670269[0]|[1]74686699-74686820[2]|[0]74708321-74708356[2] atggccgggctcgtggtgcgtggaactcaagtgtcctacataggccaggactgcagagaaattccagagcaccttggcagggactgtggacatttcgcaaagaggcttgatctgagctttaaccttctgagGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAGAAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTACCCTGCCTCAGCCTCCCAAGTAGCTGGCGACTACAGGTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGA MAGLVVRGTQVSYIGQDCREIPEHLGRDCGHFAKRLDLSFNLLRKLPLLLESKALRLKTLKR*PKRHKPCQR*TQRGSES*SSPKGEMTL*WLQKVKSLLLLSWIKTRKKLLIPMELEMHLLEMESCSVTRLECSGMISAHCNLCLSGSSDYPASASQVAGDYRFSVSTGL*QAS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29637 UBE2V2::PRKAA1 ENSG00000169139.12::ENSG00000132356.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1277 TRUE 498 UBE2V2 ENSG00000169139.12 protein_coding + + chr8:48008415-48064708:+ chr8:48008470:+ chr8:48920975-48977268:+ chr8:48921030:+ PRKAA1 ENSG00000132356.12 protein_coding - - chr5:40759389-40798374:- chr5:40767690:- chr5:40759491-40798476:- chr5:40767792:- chr8:48008694,chr8:48008695 chr5:40769959,chr5:40769958 NA NA chr8:48921254,chr8:48921255 chr5:40770061,chr5:40770060 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr5] 18 0 18 0 ONLY_REF_SPLICE YES_LDAS 0.1744 GT 1.9086 AG 1.9899 ENST00000518360.5 1-29 ENST00000397128.7 597-1680 chr8|+|[2]48008442-48008470[0]<==>chr5|-|[2]40762778-40763022[1]|[0]40764514-40764640[0]|[2]40764752-40765238[2]|[1]40767466-40767690[2] gctgcaggagaagatggcggtctccacagATTGTATGCAGGCCCAGAGGTAGATATATGGAGCAGTGGGGTTATTCTCTATGCTTTATTATGTGGAACCCTTCCATTTGATGATGACCATGTGCCAACTCTTTTTAAGAAGATATGTGATGGGATCTTCTATACCCCTCAATATTTAAATCCTTCTGTGATTAGCCTTTTGAAACATATGCTGCAGGTGGATCCCATGAAGAGGGCCACAATCAAAGATATCAGGGAACATGAATGGTTTAAACAGGACCTTCCAAAATATCTCTTTCCTGAGGATCCATCATATAGTTCAACCATGATTGATGATGAAGCCTTAAAAGAAGTATGTGAAAAGTTTGAGTGCTCAGAAGAGGAAGTTCTCAGCTGTCTTTACAACAGAAATCACCAGGATCCTTTGGCAGTTGCCTACCATCTCATAATAGATAACAGGAGAATAATGAATGAAGCCAAAGATTTCTATTTGGCGACAAGCCCACCTGATTCTTTTCTTGATGATCATCACCTGACTCGGCCCCATCCTGAAAGAGTACCATTCTTGGTTGCTGAAACACCAAGGGCACGCCATACCCTTGATGAATTAAATCCACAGAAATCCAAACACCAAGGTGTAAGGAAAGCAAAATGGCATTTAGGAATTAGAAGTCAAAGTCGACCAAATGATATTATGGCAGAAGTATGTAGAGCAATCAAACAATTGGATTATGAATGGAAGGTTGTAAACCCATATTATTTGCGTGTACGAAGGAAGAATCCTGTGACAAGCACTTACTCCAAAATGAGTCTACAGTTATACCAAGTGGATAGTAGAACTTATCTACTGGATTTCCGTAGTATTGATGATGAAATTACAGAAGCCAAATCAGGGACTGCTACTCCACAGAGATCGGGATCAGTTAGCAACTATCGATCTTGCCAAAGGAGTGATTCAGATGCTGAGGCTCAAGGAAAATCCTCAGAAGTTTCTCTTACCTCATCTGTGACCTCACTTGACTCTTCTCCTGTTGACCTAACTCCAAGACCTGGAAGTCACACAATAGAATTTTTTGAGATGTGTGCAAATCTAATTAAAATTCTTGCACAATAA LQEKMAVSTDCMQAQR*IYGAVGLFSMLYYVEPFHLMMTMCQLFLRRYVMGSSIPLNI*ILL*LAF*NICCRWIP*RGPQSKISGNMNGLNRTFQNISFLRIHHIVQP*LMMKP*KKYVKSLSAQKRKFSAVFTTEITRILWQLPTIS**ITGE**MKPKISIWRQAHLILFLMIIT*LGPILKEYHSWLLKHQGHAIPLMN*IHRNPNTKV*GKQNGI*ELEVKVDQMILWQKYVEQSNNWIMNGRL*THIICVYEGRIL*QALTPK*VYSYTKWIVELIYWISVVLMMKLQKPNQGLLLHRDRDQLATIDLAKGVIQMLRLKENPQKFLLPHL*PHLTLLLLT*LQDLEVTQ*NFLRCVQI*LKFLHN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE 5'-AMP-activated protein kinase catalytic subunit alpha-1 CAMK CAMKL AMPK Q13131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29639 PPL::C16orf89 ENSG00000118898.16::ENSG00000153446.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE FALSE TRUE 733 FALSE NA FALSE NA PPL ENSG00000118898.16 protein_coding - - chr16:4882507-4960741:- chr16:4903886:- chr16:4932508-5010742:- chr16:4953887:- C16orf89 ENSG00000153446.16 protein_coding - - chr16:5044122-5066110:- chr16:5056188:- chr16:5094123-5116111:- chr16:5106189:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ATG16|26-127|0.46^Spectrin|30-118|0.13^Spectrin|150-212|0.0015^ATG16|192-233|0.13^Spectrin|245-304|6.8e-07^ATG16|262-281|0.97 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.08Mb];LOCAL_REARRANGEMENT:-:[83381] 17 3 17 3 ONLY_REF_SPLICE YES_LDAS 0.1938 GT 1.9329 AG 1.7465 ENST00000345988.7 1-317 ENST00000474471.7 628-1305 chr16|-|[1]4903886-4904040[0]|[2]4910850-4910949[2]|[1]4936984-4937045[0]<==>chr16|-|[2]5044583-5044836[1]|[0]5047878-5047964[1]|[0]5055246-5055350[1]|[0]5055687-5055782[1]|[0]5056053-5056188[0] atgaactcgctcttcaggaagagaaacaaaggcaaatacagccccactgtgcagacccggagcatctctaacaaggagctctcggagctgatcgagcagctgcagaagaatgccgaccaggtggagaagaacatcgtggacacagaggccaagatgcagagtgacctggctcggctgcaggagggtcggcagcctgagcaccgggacgtgaccctgcagaaggtgttggactctgagaagctgctctatgtgctagaggcggatgcggccattgccaagcacatgaagcacccacagggggacatgatcgccgaggaAGGGGGTGCACACAGGGACCACTCCAACAGAGCCAGGACTATATCAACCTCTTCTGCGCCAACATGATGGACTTGAACCGCAGAGCTGAGGCCATCGGATACGCCTACCCTACCCGGGACATCTTCATGGAAAACAATGTAACTGGGCATCCTGTATTTTACCTGCCACTGTGTGACAGTTTCCTGCCCCCAAAGGCTGCCCCAGTGACGGAGCTCTACACAGATGGACCAGTCATGTTCTGTGGAATGGGCGGCTTCTCCGACTTCTACAAGCTCCGGTGGCTGGAGGCCATTCTCAGCTGGCAGAAACAGCAGGAAGGATGCTTCGGGGAGCCTGATGCTGAAGATGAAGAATTATCTAAAGCTATTCAATATCAGCAGCATTTTTCGAGGAGAGTGAAGAGGCGAGAAAAACAATTTCCAGATTCTCGCTCTGTTGCTCAGGCTGGAGTACAGTGGCGCAATCTCGGCTCACTGCAACCTTTGCCTCCTGGGTTCAAGCAATTCTCTTGCCTCATCCTCCCGAGTAGCTGGGACTACAGGAGCGTGCCACCATACCTGGCTAATTTTTATATTTTTTTAGTAGAGACAGGGTTTCATCATGTTGCTCATGCTGGTCTCGAACTCCTGATCTCAAGAGATCCGCCCACCTCAGGCTCCCAAAGTGTGGGATTATAG MNSLFRKRNKGKYSPTVQTRSISNKELSELIEQLQKNADQVEKNIVDTEAKMQSDLARLQEGRQPEHRDVTLQKVLDSEKLLYVLEADAAIAKHMKHPQGDMIAEEGGAHRDHSNRARTISTSSAPT*WT*TAELRPSDTPTLPGTSSWKTM*LGILYFTCHCVTVSCPQRLPQ*RSSTQMDQSCSVEWAASPTSTSSGGWRPFSAGRNSRKDASGSLMLKMKNYLKLFNISSIFRGE*RGEKNNFQILALLLRLEYSGAISAHCNLCLLGSSNSLASSSRVAGTTGACHHTWLIFIFF**RQGFIMLLMLVSNS*SQEIRPPQAPKVWDY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29640 DENND10::GRK5 ENSG00000119979.18::ENSG00000198873.12 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 730 FALSE NA FALSE NA DENND10 ENSG00000119979.18 protein_coding + + chr10:119104086-119137984:+ chr10:119108164:+ chr10:120863598-120897496:+ chr10:120867676:+ GRK5 ENSG00000198873.12 protein_coding + + chr10:119207571-119459745:+ chr10:119423166:+ chr10:120967083-121219257:+ chr10:121182678:+ chr10:119108548,chr10:119108548 chr10:119403904,chr10:119403902 NA NA chr10:120868060,chr10:120868060 chr10:121163416,chr10:121163414 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Avl9|146-203|4.7e-10^DENND11-PARTIAL|150-252~|9.8e-10^SPA-PARTIAL|160-252~|1.1e-12^Avl9-PARTIAL|216-252~|0.00016 Pkinase-PARTIAL|~340-448|9.9e-69^PK_Tyr_Ser-Thr-PARTIAL|~340-431|2.2e-35^Kinase-like-PARTIAL|~340-395|1.4e-06^Pkinase_fungal-PARTIAL|~340-360|2.3e-05^RGS|410-431|4.2 none 17 5 17 5 ONLY_REF_SPLICE YES_LDAS 0.2131 GT 1.8323 AG 1.6895 ENST00000361432.3 1-252 ENST00000392870.3 340-1773 chr10|+|[0]119104143-119104197[0]|[1]119107968-119108164[2]<==>chr10|+|[0]119423166-119423266[1]|[2]119424993-119425085[1]|[2]119430375-119430438[2]|[0]119431387-119431527[2]|[0]119436651-119436841[1]|[2]119439731-119439768[0]|[1]119441999-119442088[0]|[1]119443544-119443752[2]|[0]119448123-119448260[2]|[0]119452671-119452808[2]|[0]119453145-119453276[2]|[0]119454969-119455067[2] atggctgcggccgaggtggcggacactcagctgatgcttggagtcgggctgatcgaaaaggacacaaatggagaagttctgtgggtgtggtgttatccttccacgacagccacattaaggaacctgctgctgagaaaatgctgccttacagatgaaaacaaacttctccatccctttgtctttggtcagtacagaagaacatggttttatatcacaacaattgaagttccagattcttccattttgaaaaagTCCCCTGTTTTCATAGCCCAAGTTGGCCAAGACCTGGTCTCCCAGACGGAGGAGAAGCTCCTACAGAAGCCGTGCAAAGAACTCTTTTCTGCCTGTGCACAGTCTGTCCACGAGTACCTGAGGGGAGAACCATTCCACGAATATCTGGACAGCATGTTTTTTGACCGCTTTCTCCAGTGGAAGTGGTTGGAAAGGCAACCGGTGACCAAAAACACTTTCAGGCAGTATCGAGTGCTAGGAAAAGGGGGCTTCGGGGAGGTCTGTGCCTGCCAGGTTCGGGCCACGGGTAAAATGTATGCCTGCAAGCGCTTGGAGAAGAAGAGGATCAAAAAGAGGAAAGGGGAGTCCATGGCCCTCAATGAGAAGCAGATCCTCGAGAAGGTCAACAGTCAGTTTGTGGTCAACCTGGCCTATGCCTACGAGACCAAGGATGCACTGTGCTTGGTCCTGACCATCATGAATGGGGGTGACCTGAAGTTCCACATCTACAACATGGGCAACCCTGGCTTCGAGGAGGAGCGGGCCTTGTTTTATGCGGCAGAGATCCTCTGCGGCTTAGAAGACCTCCACCGTGAGAACACCGTCTACCGAGATCTGAAACCTGAAAACATCCTGTTAGATGATTATGGCCACATTAGGATCTCAGACCTGGGCTTGGCTGTGAAGATCCCCGAGGGAGACCTGATCCGCGGCCGGGTGGGCACTGTTGGCTACATGGCTCCAGAGGTCCTGAACAACCAGAGGTACGGCCTGAGCCCCGACTACTGGGGCCTTGGCTGCCTCATCTATGAGATGATCGAGGGCCAGTCGCCGTTCCGCGGCCGCAAGGAGAAGGTGAAGCGGGAGGAGGTGGACCGCCGGGTCCTGGAGACGGAGGAGGTGTACTCCCACAAGTTCTCCGAGGAGGCCAAGTCCATCTGCAAGATGCTGCTCACGAAAGATGCGAAGCAGAGGCTGGGCTGCCAGGAGGAGGGGGCTGCAGAGGTCAAGAGACACCCCTTCTTCAGGAACATGAACTTCAAGCGCTTAGAAGCCGGGATGTTGGACCCTCCCTTCGTTCCAGACCCCCGCGCTGTGTACTGTAAGGACGTGCTGGACATCGAGCAGTTCTCCACTGTGAAGGGCGTCAATCTGGACCACACAGACGACGACTTCTACTCCAAGTTCTCCACGGGCTCTGTGTCCATCCCATGGCAAAACGAGATGATAGAAACAGAATGCTTTAAGGAGCTGAACGTGTTTGGACCTAATGGTACCCTCCCGCCAGATCTGAACAGAAACCACCCTCCGGAACCGCCCAAGAAAGGGCTGCTCCAGAGACTCTTCAAGCGGCAGCATCAGAACAATTCCAAGAGTTCGCCCAGCTCCAAGACCAGTTTTAACCACCACATAAACTCAAACCATGTCAGCTCGAACTCCACCGGAAGCAGCTAG MAAAEVADTQLMLGVGLIEKDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFVFGQYRRTWFYITTIEVPDSSILKKSPVFIAQVGQDLVSQTEEKLLQKPCKELFSACAQSVHEYLRGEPFHEYLDSMFFDRFLQWKWLERQPVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGDLIRGRVGTVGYMAPEVLNNQRYGLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSHKFSEEAKSICKMLLTKDAKQRLGCQEEGAAEVKRHPFFRNMNFKRLEAGMLDPPFVPDPRAVYCKDVLDIEQFSTVKGVNLDHTDDDFYSKFSTGSVSIPWQNEMIETECFKELNVFGPNGTLPPDLNRNHPPEPPKKGLLQRLFKRQHQNNSKSSPSSKTSFNHHINSNHVSSNSTGSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE G protein-coupled receptor kinase 5 AGC GRK GRK P34947 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29642 USP32::GGA3 ENSG00000170832.13::ENSG00000125447.18 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 732 FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345481:- chr17:58254688-58499831:- chr17:58422842:- GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75246796:- chr17:73232694-73258444:- chr17:73242877:- chr17:60335442 chr17:75253789 NA NA chr17:58412803 chr17:73249870 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none VHS-PARTIAL|~41-142|3.1e-52^Helo_like_N-PARTIAL|~41-85|0.24^Maestro_HEAT|53-85|0.03^DNA_ligase_A_N|112-265|8.3e-05^GGA_N-GAT|169-207|3.8e-24^GAT|173-203|0.11^DUF2935|173-237|0.1^RapA_C|174-226|0.00013^VHS|176-203|0.37^Maestro_HEAT|181-215|0.0028^Helo_like_N|186-224|0.015^GAT|222-299|3.6e-23^RapA_C|245-291|0.68^DUF2935|248-312|0.00066^Helo_like_N|261-328|0.014^Alpha_adaptinC2|598-715|2.9e-31 ["USP32:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:14.81Mb] 16 5 16 4.44 ONLY_REF_SPLICE YES_LDAS 0.198 GT 1.9656 AG 1.6895 ENST00000588898.1 1-234 ENST00000537686.6 41-2172 chr17|-|[2]60345481-60345608[1]|[0]60422246-60422351[0]<==>chr17|-|[2]75238279-75238389[0]|[2]75238652-75238762[0]|[2]75238914-75239083[1]|[0]75239375-75239571[2]|[1]75239789-75240108[0]|[2]75240342-75240412[1]|[0]75240812-75241057[1]|[0]75241400-75241516[1]|[0]75241615-75241696[0]|[2]75242336-75242473[0]|[2]75242831-75242911[0]|[2]75243063-75243166[1]|[0]75243447-75243570[0]|[2]75244619-75244717[0]|[2]75246509-75246584[2]|[1]75246712-75246796[1] atgtgcggggtcgagcgaagactttggcagagcgcacagcaggccaggagaggctggcgccccttctcccaagaatactgtcagatgctgatcctgacaccacctgttacagatgtagagctaaaacgactgaaggatgctttcaagaggacctgtggactctcatattacatgggccagcactgcttcatccgggaagtgcttggggatggagtgcctccaaaggttgctgagATAAAGCCACCAATCCTTCCAACCGCCAGGAGGACTGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGGGCCACAGATCGCCGTCCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACGGTGCTGGAGGCATGCATGAAGAACTGTGGGAGGAGATTTCATAACGAAGTGGGGAAGTTCCGCTTTTTGAATGAGTTAATCAAAGTCGTCTCTCCAAAGTACCTGGGGGACAGGGTGTCTGAGAAAGTGAAGACCAAGGTTATTGAGCTGCTGTACAGCTGGACCATGGCCCTGCCAGAAGAAGCAAAGATCAAAGACGCCTACCACATGCTGAAGAGACAGGGCATAGTGCAGTCTGACCCACCAATTCCTGTGGATAGGACGCTGATCCCCTCTCCACCACCTCGTCCCAAAAACCCTGTTTTTGATGATGAGGAGAAGTCCAAGCTTTTAGCCAAGCTGCTGAAAAGCAAAAACCCAGATGACCTGCAGGAGGCCAACAAGCTCATCAAGTCCATGGTGAAGGAAGACGAGGCACGGATCCAGAAGGTGACCAAGCGTCTGCACACGTTAGAGGAAGTTAACAACAACGTGAGACTGCTCAGTGAGATGCTGCTTCATTACAGCCAGGAGGACTCTTCGGACGGGGACAGAGAGCTGATGAAGGAGCTGTTTGATCAGTGTGAGAACAAGAGGCGGACTTTATTTAAACTCGCCAGTGAGACTGAGGACAATGATAACAGTTTGGGGGACATCCTGCAAGCCAGTGACAACCTCTCCCGGGTCATCAACTCTTACAAAACAATTATTGAAGGGCAGGTCATCAATGGCGAGGTGGCTACCTTAACCCTGCCTGACTCGGAAGGAAACAGTCAGTGCAGTAACCAAGGCACGCTCATCGACCTTGCGGAGCTGGACACGACCAACAGTTTGTCCTCCGTGTTGGCCCCAGCACCTACTCCACCCTCCTCAGGCATCCCAATCCTCCCTCCACCACCCCAGGCCTCAGGACCTCCACGGAGCCGCTCCTCTAGCCAGGCCGAGGCCACCCTGGGGCCCAGCAGCACAAGCAACGCCCTCTCCTGGCTGGACGAGGAGCTACTCTGCTTGGGCCTCGCCGACCCAGCCCCTAATGTTCCTCCCAAAGAGTCAGCTGGGAACAGCCAGTGGCACCTGCTCCAGAGGGAACAGTCCGACCTGGACTTCTTCAGCCCCAGGCCGGGGACCGCTGCCTGTGGCGCCTCCGATGCTCCTCTGCTCCAGCCCTCAGCCCCCTCCTCAAGCAGCTCCCAAGCTCCACTGCCGCCTCCCTTCCCAGCTCCTGTGGTCCCAGCCAGTGTTCCTGCCCCCAGTGCGGGCTCCTCCTTGTTTTCTACTGGAGTGGCCCCAGCCTTGGCCCCAAAAGTTGAGCCCGCAGTCCCTGGGCACCATGGCTTGGCGTTGGGCAACAGCGCGCTGCACCACCTGGATGCCCTCGATCAGCTTCTAGAAGAGGCCAAAGTGACCTCGGGCTTGGTGAAACCCACTACCTCCCCTCTCATCCCCACCACCACCCCAGCCAGGCCCCTCCTGCCCTTCTCCACGGGGCCCGGCAGCCCGCTCTTCCAGCCACTGAGTTTCCAGTCCCAGGGCAGCCCCCCGAAGGGGCCTGAGCTCTCCCTGGCCAGCATCCACGTGCCCCTGGAATCGATCAAGCCTAGCAGTGCCCTTCCTGTGACAGCCTACGATAAAAACGGCTTCCGCATCCTCTTCCACTTTGCCAAGGAGTGTCCCCCAGGACGACCTGACGTGCTGGTGGTGGTGGTGTCCATGCTGAACACGGCTCCCTTACCTGTCAAGAGCATCGTGCTGCAGGCTGCAGTGCCCAAGTCAATGAAAGTGAAGTTGCAGCCACCTTCTGGGACAGAACTCTCTCCATTTAGCCCCATCCAGCCACCTGCAGCCATCACCCAGGTCATGTTGCTGGCCAATCCACTGAAGGAGAAGGTGCGGCTTCGGTATAAGCTGACCTTCGCCCTGGGGGAGCAGCTGAGCACAGAGGTGGGCGAGGTGGACCAGTTCCCTCCTGTGGAACAGTGGGGGAACCTATGA MCGVERRLWQSAQQARRGWRPFSQEYCQMLILTPPVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAEIKPPILPTARRTGNT*LASVIRSTRSWKGHRSPSDCWPTRSSPHRNGRRSRP*RCWRHA*RTVGGDFITKWGSSAF*MS*SKSSLQSTWGTGCLRK*RPRLLSCCTAGPWPCQKKQRSKTPTTC*RDRA*CSLTHQFLWIGR*SPLHHLVPKTLFLMMRRSPSF*PSC*KAKTQMTCRRPTSSSSPW*RKTRHGSRR*PSVCTR*RKLTTT*DCSVRCCFITARRTLRTGTES**RSCLISVRTRGGLYLNSPVRLRTMITVWGTSCKPVTTSPGSSTLTKQLLKGRSSMARWLP*PCLTRKETVSAVTKARSSTLRSWTRPTVCPPCWPQHLLHPPQASQSSLHHPRPQDLHGAAPLARPRPPWGPAAQATPSPGWTRSYSAWASPTQPLMFLPKSQLGTASGTCSRGNSPTWTSSAPGRGPLPVAPPMLLCSSPQPPPQAAPKLHCRLPSQLLWSQPVFLPPVRAPPCFLLEWPQPWPQKLSPQSLGTMAWRWATARCTTWMPSISF*KRPK*PRAW*NPLPPLSSPPPPQPGPSCPSPRGPAARSSSH*VSSPRAAPRRGLSSPWPASTCPWNRSSLAVPFL*QPTIKTASASSSTLPRSVPQDDLTCWWWWCPC*TRLPYLSRASCCRLQCPSQ*K*SCSHLLGQNSLHLAPSSHLQPSPRSCCWPIH*RRRCGFGIS*PSPWGSS*AQRWARWTSSLLWNSGGTY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29644 SNX8::MAD1L1 ENSG00000106266.11::ENSG00000002822.16 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE FALSE TRUE 738 FALSE NA FALSE NA SNX8 ENSG00000106266.11 protein_coding - - chr7:2251770-2354318:- chr7:2314328:- chr7:2291405-2393953:- chr7:2353963:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2002121:- chr7:1855429-2272878:- chr7:2041756:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["MAD1L1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.02Mb];NEIGHBORS[18527] 13 0 13 0 ONLY_REF_SPLICE YES_LDAS 0.1259 GT 1.7968 AG 1.9086 ENST00000222990.8 1-94 ENST00000265854.12 1360-2157 chr7|-|[0]2314328-2314421[0]<==>chr7|-|[2]1816070-1816228[0]|[2]1898200-1898390[1]|[0]1936687-1936897[0]|[2]1957629-1957719[2]|[1]1980453-1980541[0]|[2]2002065-2002121[0] atgactggccgcgcgatggacccgctgcccgcggctgcagtcggggcggcagctgaggcggaggctgacgaggaggcggatcccccggcgtcagGCTCAGCTGTCGCAGGCCCTGGAGGAGCTGGGAGGCCAGAAACAAAGAGCAGACATGCTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAGGTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGCTCTGCAGGGTGACTATGACCAGAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGACCACAGCCAGCTGCAGGCGGAGTGCGAGCGACTGCGCGGGCTCCTGCGCGCCATGGAGAGAGGAGGCACCGTCCCAGCCGACCTTGAGGCTGCCGCCGCGAGTCTGCCATCGTCCAAGGAGGTGGCAGAGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAGGCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAG MTGRAMDPLPAAAVGAAAEAEADEEADPPASGSAVAGPGGAGRPETKSRHAGDGAEDAEVSVQLCRTELPVLQGGGGHAQVEGRGAGRRAESAGGGKEDAGGTAGAASSAG*L*PEQDQSAAHEPEPHQCGQAAPARGPQPAAGGVRATARAPARHGERRHRPSRP*GCRRESAIVQGGGRAEEAGGECRAEEPAAQGGFPDQDPGVPQGLLHAHRLPDRHHHGEPVPADLAVRRAPRRLPHLQGHQPLGFQDAATGDRVLTHRGRAHRGAPAAPGQHPCLPQLAHPRALQPPDRGV FALSE FALSE NA NA TRUE hsa-mir-4655 chr7:1844180-1844253:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder,Esophagus BLADDER,OESOPHAGUS no_match 2278100,2314328 FALSE,TRUE 2014642,2014642 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29647 TNIK::EIF5A2 ENSG00000154310.17::ENSG00000163577.8 MKN1 SRR8615518 SRR8652123 STOMACH carcinoma (mixed_adenosquamous_carcinoma) metastasis star-fusion TRUE TRUE TRUE 734 FALSE NA FALSE NA TNIK ENSG00000154310.17 protein_coding - - chr3:171058414-171460408:- chr3:171460007:- chr3:170776203-171178197:- chr3:171177796:- EIF5A2 ENSG00000163577.8 protein_coding - - chr3:170888418-170908644:- chr3:170894423:- chr3:170606207-170626433:- chr3:170612212:- chr3:171394933,chr3:171394935 chr3:170900478,chr3:170900477 NA NA chr3:171112722,chr3:171112724 chr3:170618267,chr3:170618266 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|26-57~|3.9e-69^PK_Tyr_Ser-Thr-PARTIAL|26-57~|1.5e-50^ABC1|34-57|0.046 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.15Mb] 12 3 12 3 ONLY_REF_SPLICE YES_LDAS 0.1454 GT 1.8256 AG 1.9086 ENST00000488470.5 1-57 ENST00000295822.7 271-462 chr3|-|[2]171460007-171460063[0]<==>chr3|-|[2]170893360-170893419[0]|[2]170894292-170894423[0] atggcgagcgactccccggctcgaagcctggatgaaatagatctctcggctctgaggCTGATATGCATTCAAGATGGTTACCTTTCCCTGCTGACAGAAACTGGTGAAGTTCGTGAGGATCTTAAACTGCCAGAAGGTGAACTAGGCAAAGAAATAGAGGGAAAATACAATGCAGGTGAAGATGTACAGGTGTCTGTCATGTGTGCAATGAGTGAAGAATATGCTGTAGCCATAAAACCCTGCAAATAA MASDSPARSLDEIDLSALRLICIQDGYLSLLTETGEVREDLKLPEGELGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE TRAF2 and NCK-interacting protein kinase STE STE20 MSN Q9UKE5 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29653 BCAR3::GCLM ENSG00000137936.18::ENSG00000023909.10 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 740 FALSE NA FALSE NA BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GCLM ENSG00000023909.10 protein_coding - - chr1:93885199-93909456:- chr1:93904588:- chr1:94350755-94375012:- chr1:94370144:- chr1:93763699,chr1:93763703 chr1:93909383,chr1:93909384 NA NA chr1:94229255,chr1:94229259 chr1:94374939,chr1:94374940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.04Mb];LOCAL_REARRANGEMENT:-:[38055] 356 123 356 123 ONLY_REF_SPLICE YES_LDAS 5.7101 GT 1.8256 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29654 CRIM1::IQCA1 ENSG00000150938.10::ENSG00000132321.17 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 741 FALSE NA FALSE NA CRIM1 ENSG00000150938.10 protein_coding + + chr2:36355778-36551135:+ chr2:36441500:+ chr2:36582921-36778278:+ chr2:36668643:+ IQCA1 ENSG00000132321.17 protein_coding - - chr2:236324147-236507535:- chr2:236363979:- chr2:237232790-237416178:- chr2:237272622:- chr2:36442338,chr2:36442330 chr2:236367584,chr2:236367592 NA NA chr2:36669481,chr2:36669473 chr2:237276227,chr2:237276235 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame IGFBP|37-90|2.6e-11^VWC|39-66|4^Antistasin|40-62|4^IGFBP|131-143|3.4^VWC|162-210|4^IGFBP|172-210|4^VWC|210-247|0.094^Antistasin|212-225|3.9^VWC|242-286|0.66^IGFBP|254-286|4^Antistasin|289-293|4^VWC|291-324|4^IGFBP|323-358|4^CRIM1_C|331-345|1.2^VWC|336-390|1.1e-11^Antistasin|352-359|0.13^IGFBP|366-391|4^Antistasin|370-391|4^VWC|403-456|4.3e-12^IGFBP|416-426|1.8^Antistasin|418-426|0.074^IGFBP|432-457|4^Antistasin|453-457|4^IGFBP|467-513|2.1^Antistasin|469-498|1e-09^VWC|488-519|0.029^Antistasin|505-532|1e-10^VWC|525-555|0.002^IGFBP|536-563|4^Antistasin|539-564|2.8e-09^VWC|558-578|4^IGFBP|562-591|4^Antistasin|567-592|9.6e-13^VWC|583-595|0.15^VWC|611-662|1.5e-11^IGFBP|619-631|3.1^Antistasin|624-631|2.3^IGFBP|637-664|3.7^VWC|684-734|1.2e-13^Antistasin|696-703|4^IGFBP|710-737|4^Antistasin|715-721|4 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:199.77Mb] 188 113 188 113 ONLY_REF_SPLICE YES_LDAS 3.5881 GT 1.8892 AG 1.9329 ENST00000280527.7 1-748 ENST00000409907.8 1670-2469 chr2|+|[0]36356293-36356623[0]|[1]36396614-36396787[0]|[1]36441258-36441500[0]<==>chr2|-|[2]236324688-236324783[0]|[2]236331359-236331597[1]|[0]236338205-236338382[0]|[2]236344557-236344643[0]|[2]236363780-236363979[1] atgtacttggtggcgggggacagggggttggccggctgcgggcacctcctggtctcgctgctggggctgctgctgctgctggcgcgctccggcacccgggcgctggtctgcctgccctgtgacgagtccaagtgcgaggagcccaggaactgcccggggagcatcgtgcagggcgtctgcggctgctgctacacgtgcgccagccagaggaacgagagctgcggcggcaccttcgggatttacggaacctgcgaccgggggctgcgttgtgtcatccgccccccgctcaatggcgactccctcaccgagtacgaagcgggcgtttgcgaagatgagaactggactgatgaccaactgcttggttttaaaccatgcaatgaaaaccttattgctggctgcaatataatcaatgggaaatgtgaatgtaacaccattcgaacctgcagcaatccctttgagtttccaagtcaggatatgtgcctttcagctttaaagagaattgaagaagagaagccagattgctccaaggcccgctgtgaagtccagttctctccacgttgtcctgaagattctgttctgatcgagggttatgctcctcctggggagtgctgtcccttacccagccgctgcgtgtgcaaccccgcaggctgtctgcgcaaagtctgccagccgggaaacctgaacatactagtgtcaaaagcctcagggaagccgggagagtgctgtgacctctatgagtgcaaaccagGTTCTGCAGCAGTGCATGAGAAAGCTCCTTTGGTGAAATCGCTACTGTTAGCCGGGCCGTCTGGGGTAGGGAAGAAAATGCTGGTCCATGCCATCTGCACCGAAACGGGAGCCAACCTCTTCAACTTGTCCTCCTCTAACATTGCTGGGAAATACCCTGGCAAAAATGGCCTCCAAATGATGCTGCATGCAGTCTTCAAGGTGGCTCGACAGCTCCAGCCCTCCGTGGTGTGGATTGAAGACACAGAAAAAACCTTCTACAAAAAAGTTCCCAACGCAGAAAAGATGAATGAACCTAAACGCCTGAAAAAACACCTTCCCCAAATCCTGAAACTCCTGAAACCAGATGACCGGATTCTGATTGTGGGGACCACACGGCGTCCCTTCGATGCTGAACTCCAATCTTTCTGCAAAGTTTACCAGAAAATTATTTTGGTGCCCAGACCAGACTATGCTTCCAGATACGTTCTGTGGAAGCAAATCATTGAACGCAATGGAGGAGTCCTCACCAGTGCCTTGAATGTCAGCTGCCTGGCGAAGGTCACTGACGGCTTCACCCAAGGACATATAGTCGAAGTGGTTAAAGGCGTGCTCACAGATCAGAGAATCCGGCGGCAAATTCATAAACCTCTCACTGCAGTTGAGTTTATTACGGCGATAACCAGCATGAATCCAGTGTACAAAGAGGAAGAAGAGAGCTTTAAGAACTGGTATGCCAAAACTCCTCTGGGTAAAAAACGTGCCTTGGCGATAACAGGAGGCAGCACAGAAAAGGCAAAGGACAAAGGGAAAAGGAAATAA MYLVAGDRGLAGCGHLLVSLLGLLLLLARSGTRALVCLPCDESKCEEPRNCPGSIVQGVCGCCYTCASQRNESCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCEDENWTDDQLLGFKPCNENLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRIEEEKPDCSKARCEVQFSPRCPEDSVLIEGYAPPGECCPLPSRCVCNPAGCLRKVCQPGNLNILVSKASGKPGECCDLYECKPGSAAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSSSNIAGKYPGKNGLQMMLHAVFKVARQLQPSVVWIEDTEKTFYKKVPNAEKMNEPKRLKKHLPQILKLLKPDDRILIVGTTRRPFDAELQSFCKVYQKIILVPRPDYASRYVLWKQIIERNGGVLTSALNVSCLAKVTDGFTQGHIVEVVKGVLTDQRIRRQIHKPLTAVEFITAITSMNPVYKEEEESFKNWYAKTPLGKKRALAITGGSTEKAKDKGKRK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29655 MBD2::LINC01917 ENSG00000134046.12::ENSG00000260433.3 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MBD2 ENSG00000134046.12 protein_coding - - chr18:54151606-54224669:- chr18:54224018:- chr18:51677976-51751039:- chr18:51750388:- LINC01917 ENSG00000260433.3 lncRNA - - chr18:53480825-53581107:- chr18:53481073:- chr18:51007195-51107477:- chr18:51007443:- chr18:54221835,chr18:54221837 chr18:53489812,chr18:53489811 NA NA chr18:51748205,chr18:51748207 chr18:51016182,chr18:51016181 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MBD2:Oncogene"] 118 27 118 27 ONLY_REF_SPLICE YES_LDAS 1.7285 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29657 CLN8::CSMD3 ENSG00000182372.10::ENSG00000164796.18 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 744 FALSE NA FALSE NA CLN8 ENSG00000182372.10 protein_coding + + chr8:1755778-1801711:+ chr8:1771597:+ chr8:1703944-1749877:+ chr8:1719763:+ CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113019179:- chr8:113235157-114449168:- chr8:114031408:- chr8:1774884,chr8:1774883 chr8:113042106,chr8:113042107 NA NA chr8:1723050,chr8:1723049 chr8:114054335,chr8:114054336 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TRAM_LAG1_CLN8|31-43|0.17^TRAM_LAG1_CLN8|67-251|5.7e-13 Sushi-PARTIAL|~798-851|1.8e-08^CUB|855-960|1.1e-28^CUB_2|876-962|0.012^Sushi|970-1023|5.5e-12^CUB|1027-1134|6.2e-20^CUB_2|1046-1085|0.0058^Sushi|1142-1197|3.7e-10^CUB|1201-1306|3.7e-26^CUB_2|1218-1263|0.36^Sushi|1314-1370|2e-08^CUB|1374-1480|5.9e-25^CUB_2|1394-1419|0.027^Sushi|1490-1544|5.4e-11^CUB|1548-1653|1.5e-29^CUB_2|1567-1590|0.024^Sushi|1661-1718|1.4e-09^CUB|1722-1827|4.2e-20^CUB_2|1740-1780|0.0022^Sushi|1838-1895|2e-08^CUB|1899-2004|1e-27^CUB_2|1918-1943|2.2e-05^Sushi|2012-2067|1.4e-12^CUB|2071-2176|6.1e-27^CUB_2|2090-2179|2.1e-05^Sushi|2184-2239|6.7e-13^CUB|2243-2339|7.3e-26^CUB_2|2259-2343|9.9e-06^Sushi|2355-2412|1.6e-12^CUB|2424-2524|2.6e-20^CUB_2|2437-2524|0.0016^Sushi|2529-2587|2.2e-09^Sushi|2592-2649|1.7e-14^HRM|2610-2649|0.00019^Sushi|2661-2709|1.9e-11^HRM|2693-2710|0.076^Sushi|2719-2772|1.4e-11^HRM|2734-2769|0.0018^Sushi|2777-2830|1.3e-15^HRM|2798-2828|0.48^Sushi|2835-2888|2e-13^HRM|2869-2894|0.052^Sushi|2907-2950|8.1e-14^HRM|2916-2955|0.011^Sushi|2955-3008|4.4e-11^HRM|2974-3006|0.0032^Sushi|3016-3069|7.5e-14^HRM|3050-3075|0.009^Sushi|3074-3128|5.3e-13^HRM|3110-3129|0.0016^Sushi|3133-3188|1e-13^HRM|3151-3193|0.00087^Sushi|3193-3246|2.1e-15^HRM|3232-3244|2.2^Sushi|3251-3304|1e-11^HRM|3285-3313|0.0014^Sushi|3312-3366|3.8e-13^HRM|3331-3365|0.055^Sushi|3371-3426|2.5e-10 ["CSMD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:110.44Mb] 13 12 13 12 ONLY_REF_SPLICE YES_LDAS 0.298 GT 1.9329 AG 1.8256 ENST00000519254.2 1-543 ENST00000343508.7 798-11004 chr8|+|[0]1771055-1771597[2]<==>chr8|-|[2]112224771-112224930[2]|[1]112228756-112228891[1]|[0]112231545-112231632[0]|[2]112234365-112234477[1]|[0]112237190-112237348[1]|[0]112241720-112241785[1]|[0]112244394-112244573[1]|[0]112247020-112247131[0]|[2]112254253-112254326[1]|[0]112255254-112255427[1]|[0]112263639-112263812[1]|[0]112265411-112265590[1]|[0]112281174-112281350[1]|[0]112287064-112287246[1]|[0]112289365-112289538[1]|[0]112291510-112291695[1]|[0]112292537-112292710[1]|[0]112295833-112296006[1]|[0]112301793-112301966[1]|[0]112304721-112304915[1]|[0]112306007-112306192[1]|[0]112310978-112311166[1]|[0]112313906-112314052[1]|[0]112314429-112314617[1]|[0]112318837-112318950[1]|[0]112319901-112319981[1]|[0]112335329-112335474[2]|[1]112336652-112336829[1]|[0]112337543-112337731[1]|[0]112341477-112341686[1]|[0]112346097-112346213[1]|[0]112351175-112351244[0]|[2]112352416-112352534[1]|[0]112380352-112380456[1]|[0]112383567-112383663[0]|[2]112390664-112390788[1]|[0]112406524-112406727[1]|[0]112408318-112408413[1]|[0]112408919-112409032[1]|[0]112472591-112472707[1]|[0]112492489-112492683[1]|[0]112503790-112503977[2]|[1]112506691-112506829[1]|[0]112517034-112517225[1]|[0]112550671-112550873[2]|[1]112552594-112552720[1]|[0]112556763-112556954[1]|[0]112573501-112573657[0]|[2]112587066-112587235[1]|[0]112636817-112637005[1]|[0]112638696-112638911[1]|[0]112645109-112645225[1]|[0]112650161-112650349[1]|[0]112656154-112656341[2]|[1]112666277-112666415[1]|[0]112682442-112682636[1]|[0]112685406-112685732[1]|[0]112689868-112690050[1]|[0]112800162-112800274[2]|[1]112829686-112829789[0]|[2]112859145-112859266[1]|[0]112921627-112921751[2]|[1]112947790-112947877[1]|[0]112954684-112954761[1]|[0]112975837-112976148[1]|[0]113019067-113019179[2] atgaatcctgcgagcgatgggggcacatcagagagcatttttgacctggactatgcatcctgggggatccgctccacgctgatggtcgctggctttgtcttctacttgggcgtctttgtggtctgccaccagctgtcctcttccctgaatgccacttaccgttctttggtggccagagagaaggtcttctgggacctggcggccacgcgtgcagtctttggtgttcagagcacagccgcaggcctgtgggctctgctgggggaccctgtgctgcatgccgacaaggcgcgtggccagcagaactggtgctggtttcacatcacgacagcaacgggattcttttgctttgaaaatgttgcagtccacctgtccaacttgatcttccggacatttgacttgtttctggttatccaccatctctttgcctttcttgggtttcttggctgcttggtcaatctccaagctggccactatctagctatgaccacgttgctcctggagatgagcacgccctttacctgcgtttcctggatgctcttaaagGTTATCTGGAATGAATATACCACCACCAATTATCAGCAACAAAAACTGGCTCAGACTGCATTTTGTTACAGACAGCAATCATCGATACCGTGGATTTAGTGCTCCCTATCAAGGTTCTTCTACATTGACCCACACTACCTCCACTGGTGAGTTAGAGGAGCATAACAGGACTACCACTGGTGCTATTGCTGTTGCTAGCACACCTGCAGATGTTACTGTATCCAGTGTTACAGCTGTCACCATCCATAGACTTTCCGAGGAACAGCGAGTGCAAGTTACGAGTCTCAGAAATTCAGGTCTGGACCCCAACACGTCCAAGGACGGGCTCTCTCCTCATCCAGCAGATACACAAAGTACCAGGAGAAGACCAAGACATGCTGAACAGATAGAAAGAACTAAAGAGCTTGCAGTTGTTACTCATAGAGTGAAAAAGGCCATAGATTTTAAATCTAGAGGATTTAAATTGTTTCCAGGGAAAGACAACAGCAACAAGTTTTCTATCTTAAATGAGGGAGGTATTAAAACAGCTTCCAATTTATGCCCAGATCCAGGAGAACCAGAAAATGGGAAGAGAATCGGATCAGATTTTAGCCTTGGATCAACTGTGCAGTTCTCTTGTGATGAAGATTATGTCCTACAGGGCGCAAAGAGCATCACCTGTCAACGGATAGCTGAAGTTTTTGCTGCTTGGAGTGATCACAGGCCTGTGTGTAAAGTGAAAACGTGTGGCTCTAATCTTCAAGGACCAAGTGGTACCTTTACATCTCCCAACTTTCCGTTCCAGTATGACAGCAATGCACAATGTGTCTGGGTCATCACAGCAGTGAATACAAATAAGGTTATCCAGATAAATTTTGAAGAATTTGATCTGGAGATTGGCTATGATACCTTGACAATTGGCGATGGGGGCGAAGTTGGAGATCCTAGGACAGTGCTCCAAGTGCTGACTGGAAGCTTTGTACCAGACTTGATAGTGAGCATGAGTAGCCAAATGTGGCTGCACCTTCAAACGGACGAAAGTGTTGGATCTGTTGGTTTCAAGGTTAACTACAAAGAAATTGAGAAAGAAAGTTGTGGTGATCCTGGTACACCCTTATATGGAATTAGAGAAGGCGATGGATTTTCTAATCGTGATGTTTTAAGGTTTGAATGCCAGTTTGGGTTTGAATTAATTGGAGAGAAATCCATTGTTTGTCAAGAGAATAACCAATGGTCTGCAAACATACCCATCTGTATCTTTCCCTGCCTGTCTAACTTTACTGCACCAATGGGAACAGTTCTTTCTCCTGATTACCCAGAAGGGTATGGAAATAATTTAAATTGCATCTGGACGATAATCTCTGATCCAGGGAGCCGGATACATCTTTCTTTCAATGACTTTGACCTGGAATCCCAGTTTGATTTCCTTGCTGTTAAAGATGGTGACTCTCCAGAATCCCCAATTCTTGGAACCTTTACTGGGGCTGAGGTGCCTTCCCATCTTACTAGTAATAGTCACATACTGCGATTGGAATTTCAGGCTGACCACTCAATGTCAGGACGTGGCTTTAACATCACTTACAACACATTTGGACATAATGAATGCCCTGATCCTGGAATACCAATCAATGCACGGCGGTTTGGGGACAACTTTCAATTAGGAAGTTCAATTTCAGTTATTTGTGAAGAAGGATTTATTAAAACCCAGGGAACAGAAACAATTACATGTATTCTTATGGATGGAAAAGTAATGTGGAGTGGACTGATTCCAAAATGTGGAGCCCCATGTGGTGGCCATTTTTCAGCTCCCAGTGGAGTGATTCTCTCACCAGGATGGCCAGGATACTACAAAGACTCTTTGAATTGTGAGTGGGTGATTGAAGCTGAACCTGGACACTCTATCAAAATTACATTTGAAAGATTTCAGACTGAACTGAATTATGATGTTCTGGAAGTTCATGATGGGCCAAATCTTCTGTCACCCTTGCTTGGATCTTACAATGGCACCCAAGTGCCCCAGTTTCTATTTAGTAGCAGTAATTTTATATACCTTCTATTTACAACAGACAACAGTCGTTCCAATAATGGTTTCAAGATTCATTATGAAAGTGTTACAGTGAACACGTATTCTTGTTTGGACCCTGGCATACCTGTACATGGCCGTCGCTATGGTCATGATTTCTCCATTGGCTCTACTGTTTCATTTAGTTGTGATTCAGGATACAGGTTGAGTCATGAAGAGCCCCTTCTATGCGAAAAAAACCACTGGTGGAGTCATCCACTTCCAACCTGTGATGCATTATGTGGAGGAGATGTTAGAGGGCCTAGTGGAACAATCTTATCACCTGGTTACCCGGAATTTTATCCAAATTCTCTGAATTGTACATGGACTGTTGATGTAACCCATGGAAAAGGTGTGCAGTTCAACTTCCACACTTTTCATTTGGAAGACCATCATGACTACTTACTGATCACAGAGAATGGCAGTTTTACCCAACCACTGGCACGCCTGACTGGTTCAGATCTTCCTCCAACAATCAATGCTGGTCTCTATGGAAATTTCAGGGCTCAATTGCGTTTCATTTCAGATTTTTCAATATCATATGAAGGATTTAACATAACATTCTCTGAATATAACCTTGAACCTTGTGAAGATCCTGGCATTCCTCAATATGGTAGTCGAATCGGGTTCAACTTTGGGATTGGTGACACTCTGACCTTCTCATGCTCTTCGGGTTATCGACTGGAAGGAACATCAGAGATCATCTGTCTTGGTGGTGGCCGACGAGTGTGGAGTGCACCTCTGCCAAGGTGTGTGGCTGAATGTGGTGCATCTGCAACGAATAATGAAGGAATTTTGCTGTCTCCAAATTATCCACTCAACTATGAAAACAACCATGAATGCATTTATAGTATTCAGGTTCAAGCAGGAAAGGGAATCAATATTTCAGCCAGAACATTTCATTTAGCACAAGGAGATGTTCTTAAGATTTATGATGGAAAAGATAAAACGACTCATCTACTAGGTGCTTTTACTGGTGCATCTATGCGCGGACTGACACTTAGTAGTACTTCAAATCAACTCTGGCTAGAATTTAATTCCGATACTGAAGGGACAGATGAAGGCTTTCAACTTGTGTATACCAGTTTTGAACTCTCACACTGTGAAGATCCTGGCATTCCACAATTTGGATACAAGATCAGTGACCAAGGCCACTTTGCTGGTAGCACCATCATTTATGGATGCAATCCAGGCTACACTCTCCACGGAAGTAGCCTTCTCAAGTGCATGACAGGGGAGAGAAGGGCATGGGACTATCCTCTGCCTTCCTGTATTGCTGAATGTGGAGGTCGTTTTAAAGGAGAATCATCAGGAAGAATCTTATCTCCTGGCTATCCTTTTCCATATGACAATAACCTGCGTTGCATGTGGATGATTGAGGTAGATCCTGGAAATATTGTCAGCTTGCAGTTTCTTGCTTTTGATACGGAAGCATCACATGATATACTCCGAGTCTGGGACGGTCCACCAGAAAATGATATGCTTTTAAAGGAAATTAGTGGATCTCTTATTCCTGAAGGAATTCATAGCACCCTCAATATAGTAACCATCCAGTTTGACACGGATTTTTATATTAGCAAATCTGGATTTGCAATTCAGTTTTCAAGTTCTGTTGCCACTGCGTGTCGTGACCCAGGGGTCCCCATGAATGGGACTCGAAATGGGGATGGAAGAGAACCTGGGGACACTGTTGTTTTTCAATGTGACCCAGGATATGAACTTCAAGGAGAGGAAAGAATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAGCCCACCAGTCTGTATAGCACCCTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATTCTTTCACCAAACTTCCCTCATCCATATCCGCATAGCAGAGACTGTGACTGGACTATCACCGTCAATGCAGACTATGTTATCTCCTTGGCGTTCATCAGTTTTAGCATAGAACCAAACTATGACTTCCTCTATATCTATGATGGACCAGACAGTAATAGCCCACTGATTGGAAGTTTTCAAGACAGCAAGTTACCAGAGAGAATAGAAAGCAGCTCAAATACAATGCATTTGGCTTTTCGGAGTGATGGATCTGTTAGTTACACTGGATTTCATCTAGAATACAAAGCAAAACTGCGAGAGTCCTGCTTTGATCCAGGCAATATAATGAATGGCACCAGACTTGGAATGGATTATAAATTAGGGTCAACAGTCACCTATTACTGTGATGCTGGTTATGTTCTTCAAGGTTATTCAACACTCACCTGTATCATGGGAGATGATGGAAGACCTGGATGGAATAGAGCCTTGCCAAGTTGTCATGCGCCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCAAAGGAGTTTGTGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTATGATGGGCCAACTCAGCAATCTTCTCTGTTATCTTCCCTCTCAGGATCCCATTCAGGAGAATCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTTACTTCAGTTGGACCAATAACAGCTAAGGGATTTCACTTTGTTTACCAAGCTGTTCCTAGAACAAGTTCTACACAATGCAGTTCTGTGCCTGAACCAAGATTCGGAAGAAGAATTGGCAATGAATTTGCAGTCGGTTCATCGGTTCTTTTTGATTGTAATCCAGGATATATTCTCCATGGATCCATAGCAATTAGGTGTGAAACAGTGCCCAATTCTTTGGCCCAGTGGAATGATTCCTTACCTACTTGTATTGTGCCCTGTGGTGGAATTTTAACTAAGCGCAAAGGGACTATTTTGTCACCTGGATACCCTGAGCCTTATGACAACAATCTGAATTGTGTGTGGAAGATCACAGTGCCAGAGGGAGCTGGCATTCAAGTGCAAGTTGTTAGCTTTGCTACAGAACATAATTGGGATTCTCTGGACTTTTATGATGGGGGAGACAACAATGCTCCAAGACTTGGAAGCTATTCAGGAACAACAATACCCCATCTTTTGAATAGTACGTCTAATAATCTGTATCTAAATTTTCAATCAGACATCAGTGTTTCTGCTGCAGGATTTCATCTTGAATACACAGCAATTGGTTTGGATTCCTGTCCTGAACCACAAACTCCTAGCAGTGGAATTAAAATTGGAGACAGATATATGGTTGGAGATGTAGTATCCTTTCAGTGTGATCAAGGATATTCTCTTCAGGGTCACTCTCACATTACATGTATGCCAGGACCTGTAAGAAGATGGAATTATCCAATCCCAATTTGTTTAGCTCAGTGTGGTGGTGCTATGTCAGACTTCAGTGGTGTGATCCTCAGTCCTGGGTTTCCTGGAAACTATCCCAGCAGTTTAGATTGCACATGGACAATAAATCTACCCATAGGTTTTGGTGTACATCTCCAGTTTGTAAATTTTTCTACAGAAACCATACATGATTATTTGGAAGTACGAAGTGGATCCTCAGAAACTAGTACTGTTATTGGCCGGCTTAGTGGTCCTCAAATACCATCTTCCTTATTCAGCACCACCCATGAAACCAGCTTATATTTTCACAGTGACTATTCACAAAACAAACAAGGGTTTCATATTGTATACCAAGCCTATCAGTTGCAAAGCTGTCCTGATCCACGCCCGTTTCGAAATGGTTTTGTAATTGGTAATGATTTTACTGTGGGTCAAACCATTTCATTTGAATGTTTCCCAGGATACACATTAATTGGAAATTCAGCTCTCACATGCCTTCACGGAGTCAGTCGTAATTGGAATCATCCACTTCCAAGGTGTGAAGCTCTTTGTGGTGGGAATATAACTGCAATGAATGGCACCATTTATTCTCCTGGGTATCCTGATGAATATCCAAACTTTCAAGATTGTTTTTGGCTTGTAAGAGTACCCCCTGGGAATGGCATCTACATCAATTTTACTGTCCTTCAAACAGAACCAATATATGATTTCATTACTGTATGGGATGGACCAGACCAAAATTCACCTCAGATCGGTCAGTTCAGTGGCAATACCGCTTTGGAATCAGTCTACAGTACTTCAAATCAGATTCTAATCAAATTCCACAGTGATTTCACAACAAGTGGCTTTTTTGTGCTCAGTTATCACGCCTATCAACTAAGGGTGTGCCAACCTCCACCACCTGTGCCCAATGCTGAAATTTTGACGGAAGATGATGAATTTGAAATAGGTGATATTATTAGGTATCAGTGTCTTCCAGGATTTACTTTAGTTGGTAATGCAATTCTGACGTGCAGATTAGGAGAACGACTGCAGATGGATGGAGCACCTCCAGTTTGTCAAGTGCTCTGTCCTGCCAATGAATTACGGCTAGATTCTACTGGAGTCATATTGAGCCCTGGATATCCTGACAGTTACCCAAATCTTCAAATGTGTGCATGGAGCATTTCAGTGGAAAAGGGTTATAATATCACCATGTTTGTAGAATTCTTCCAGACAGAAAAGGAATTTGATGTTCTTCAGGTGTATGATGGACCAAATATTCAAAGTCCAGTGCTTATTTCCCTCAGTGGGGATTATTCATCTGCTTTTAATATAACAAGCAATGGTCATGAAGTATTTCTTCAGTGGTCAGCAGATCATGGCAATAACAAAAAAGGCTTCCGGATAAGATATATAGCTTTCTACTGTAGTACACCAGAATCCCCACCTCATGGATATATTATCAGTCAGACAGGTGGGCAGCTTAACAGTGTGGTCCGTTGGGCCTGTGATCGAGGATTCCGACTTGTTGGAAAAAGCAGTGCTGTGTGCAGAAAGTCTTCCTATGGGTATCATGCATGGGATGCGCCAGTCCCTGCCTGTCAAGCAATTTCCTGTGGGATTCCTAAAGCTCCAACAAATGGAGGAATACTAACAACAGACTATTTGGTAGGAACGCGAGTTACCTATTTTTGTAATGATGGATATCGATTGTCATCCAAAGAACTCACTACAGCTGTATGCCAATCAGATGGAACATGGAGCAATCATAACAAGACCCCTCGCTGTGTTGTTGTTACATGTCCAAGCATCAATTCCTTTATCTTGGAACATGGAAGATGGCGAATTGTGAATGGCTCCCATTATGAATACAAAACCAAAGTAGTTTTCAGCTGTGACCCTGGTTATCATGGACTAGGTCCTGCCTCCATCGAATGTCTTCCTAATGGTACTTGGAGTTGGAGAAATGAAAGACCATATTGCCAAATTATTTCCTGTGGAGAACTACCTACACCTCCAAATGGAAATAAGATTGGAACTCAAACTTCATATGGCTCAACAGCTATCTTTACCTGCGACTTGGGATTCATGCTTGTGGGCTCTGCTGTAAGGGAATGCCTTTCCTCAGGTCTTTGGAGTGAATCTGAAACCAGATGCCTAGCGGGTCATTGTGGAATTCCAGAACTGATTGTGAATGGTCAAGTCATTGGAGAAAATTATGGATATAGAGACACAGTTGTATATCAATGTAATCCTGGTTTTCGATTGATTGGTTCTTCAGTGAGGATATGTCAACAGGATCACAATTGGTCTGGTCAGCTCCCATCCTGTGTGCCTGTTAGCTGTGGTCACCCTGGTAGTCCAATTTATGGAAGAACAAGTGGAAATGGGTTCAACTTTAATGATGTGGTAACATTCTCATGCAATATTGGGTATCTTATGCAAGGGCCAACAAAGGCACAGTGCCAGGCCAACAGACAGTGGAGCCATCCTCCACCTATGTGCAAAGTGGTCAACTGTTCTGATCCTGGAATTCCAGCCAATTCTAAAAGAGAAAGTAAAATAGAACATGGAAATTTTACTTACGGCACTGTGGTATTCTATGACTGCAATCCTGGATATTTTTTATTTGGATCTTCAGTTTTGATATGTCAACCAAATGGACAATGGGACAAACCTTTACCAGAATGTATCATGATTGACTGTGGACACCCTGGCGTTCCTCCTAATGCAGTCCTGTCTGGCGAGAAGTATACTTTTGGGTCTACTGTTCACTATTCCTGCACAGGAAAGCGTTCCCTTTTAGGCCAGTCATCAAGAACCTGCCAATTGAATGGCCATTGGAGTGGATCACAACCTCATTGTTCAGGTGATGCTACTGGGACATGTGGCGATCCAGGTACTCCCGGCCATGGCTCTAGACAGGAAAGCAATTTCAGAACTAAAAGTACTGTACGTTATGCTTGTGATACTGGTTACATCCTTCATGGCTCAGAAGAAAGAACATGTTTAGCTAATGGCAGTTGGACCGGAAGGCAGCCAGAGTGCAAAGCTGTGCAGTGTGGTAACCCAGGAACCACAGCCAATGGGAAAGTCTTCCGAATTGATGGCACAACATTTTCTAGTTCAGTCATTTATTCCTGCATGGAGGGATACATCCTTTCTGGACCTTCAGTTAGACAGTGCACAGCCAATGGAACATGGTCTGGAACTTTACCTAACTGTACAATAATCAGTTGTGGAGACCCAGGTATACCAGCCAATGGACTGAGATATGGAGATGATTATGTGGTTGGACAAAATGTTTCTTACATGTGCCAGCCAGGCTACACGATGGAATTGAATGGCTCCAGAATCAGGACTTGTACAATTAATGGCACATGGAGTGGAGTAATGCCAACTTGTAGAGCTGTTACCTGCCCAACTCCTCCCCAGATCTCTAATGGAAGGCTGGAAGGAACAAATTTCGACTGGGGCTTTAGTATTAGCTACATCTGTTCTCCAGGCTATGAGCTATCCTTCCCTGCTGTTTTGACCTGTGTAGGGAATGGTACCTGGAGTGGTGAAGTACCGCAGTGCTTACCAAAGTTTTGTGGTGACCCTGGTATACCTGCCCAAGGAAAAAGAGAAGGCAAAAGCTTTATATACCAGTCAGAGGTTTCATTCAGCTGCAATTTTCCTTTCATATTAGTGGGATCAAGCACCAGAATATGTCAAGCAGATGGCACTTGGAGTGGTTCATCACCTCACTGCATAGAGCCTACCCAAACCTCTTGTGAAAACCCAGGTGTGCCTCGGCATGGATCTCAGAACAATACATTCGGATTTCAAGTAGGAAGTGTTGTACAGTTCCATTGCAAAAAAGGACACCTTCTCCAAGGGTCTACAACACGCACCTGCCTCCCTGATCTTACGTGGAGTGGGATTCAGCCTGAATGCATACCCCACAGCTGTAAACAGCCAGAAACTCCTGCTCATGCAAATGTCGTAGGGATGGACCTTCCATCTCATGGGTATACACTGATTTATACCTGTCAGCCTGGCTTCTTCTTAGCAGGTGGAACAGAACATAGAGTGTGTAGATCCGATAACACCTGGACTGGAAAAGTTCCCATTTGTGAAGCTGGTTCTAAAATATTGGTGAAAGATCCTAGACCTGCACTGGGAACACCCAGCCCAAAGCTAAGTGTTCCTGATGATGTATTTGCCCAAAATTATATATGGAAAGGCTCTTACAATTTCAAAGGAAGGAAACAACCCATGACCTTAACAGTTACTAGTTTCAATGCTTCCACTGGGAGAGTTAACGCAACACTGAGCAATAGCAACATGGAGCTGCTACTTTCAGGGGTATATAAAAGCCAGGAAGCTCGCCTAATGTTACGCATATATCTTATTAAAGTACCTGCTCATGCTTCTGTGAAGAAAATGAAGGAAGAAAATTGGGCAATGGATGGCTTTGTTTCTGCTGAGCCTGATGGAGCTACTTATGTATTTCAAGGATTTATTCAAGGCAAAGATTATGGACAATTTGGCCTACAAAGACTGGGACTGAATATGTCAGAAGGTTCAAATTCTTCAAATCAACCTCATGGTACAAATAGTAGTTCTGTAGCCATTGCTATTCTTGTGCCTTTTTTTGCACTTATATTTGCAGGATTTGGATTTTATCTTTATAAACAAAGGACTGCACCTAAAACACAGTATACAGGATGTTCAGTTCATGAAAATAACAATGGCCAAGCAGCTTTTGAAAATCCCATGTATGACACCAACGCAAAGTCAGTGGAAGGGAAGGCGGTACGATTTGATCCCAACTTGAACACGGTTTGCACAATGGTATAA MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAAGLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLKVIWNEYTTTNYQQQKLAQTAFCYRQQSSIPWI*CSLSRFFYIDPHYLHW*VRGA*QDYHWCYCCC*HTCRCYCIQCYSCHHP*TFRGTASASYESQKFRSGPQHVQGRALSSSSRYTKYQEKTKTC*TDRKN*RACSCYS*SEKGHRF*I*RI*IVSRERQQQQVFYLK*GRY*NSFQFMPRSRRTRKWEENRIRF*PWINCAVLL**RLCPTGRKEHHLSTDS*SFCCLE*SQACV*SENVWL*SSRTKWYLYISQLSVPV*QQCTMCLGHHSSEYK*GYPDKF*RI*SGDWL*YLDNWRWGRSWRS*DSAPSADWKLCTRLDSEHE*PNVAAPSNGRKCWICWFQG*LQRN*ERKLW*SWYTLIWN*RRRWIF*S*CFKV*MPVWV*INWREIHCLSRE*PMVCKHTHLYLSLPV*LYCTNGNSSFS*LPRRVWK*FKLHLDDNL*SREPDTSFFQ*L*PGIPV*FPCC*RW*LSRIPNSWNLYWG*GAFPSY***SHTAIGISG*PLNVRTWL*HHLQHIWT**MP*SWNTNQCTAVWGQLSIRKFNFSYL*RRIY*NPGNRNNYMYSYGWKSNVEWTDSKMWSPMWWPFFSSQWSDSLTRMARILQRLFEL*VGD*S*TWTLYQNYI*KISD*TEL*CSGSS*WAKSSVTLAWILQWHPSAPVSI**Q*FYIPSIYNRQQSFQ*WFQDSL*KCYSEHVFLFGPWHTCTWPSLWS*FLHWLYCFI*L*FRIQVES*RAPSMRKKPLVESSTSNL*CIMWRRC*RA*WNNLITWLPGILSKFSELYMDC*CNPWKRCAVQLPHFSFGRPS*LLTDHREWQFYPTTGTPDWFRSSSNNQCWSLWKFQGSIAFHFRFFNII*RI*HNIL*I*P*TL*RSWHSSIW*SNRVQLWDW*HSDLLMLFGLSTGRNIRDHLSWWWPTSVECTSAKVCG*MWCICNE**RNFAVSKLSTQL*KQP*MHL*YSGSSRKGNQYFSQNISFSTRRCS*DL*WKR*NDSSTRCFYWCIYARTDT**YFKSTLARI*FRY*RDR*RLSTCVYQF*TLTL*RSWHSTIWIQDQ*PRPLCW*HHHLWMQSRLHSPRK*PSQVHDRGEKGMGLSSAFLYC*MWRSF*RRIIRKNLISWLSFSI*Q*PALHVDD*GRSWKYCQLAVSCF*YGSIT*YTPSLGRSTRK*YAFKGN*WISYS*RNS*HPQYSNHPV*HGFLY*QIWICNSVFKFCCHCVS*PRGPHEWDSKWGWKRTWGHCCFSM*PRI*TSRRGKNNLHSGRKSVLLAAQPTSLYSTLWRQFNRIFRLYSFTKLPSSISA*QRL*LDYHRQCRLCYLLGVHQF*HRTKL*LPLYL*WTRQ**PTDWKFSRQQVTRENRKQLKYNAFGFSE*WIC*LHWISSRIQSKTARVLL*SRQYNEWHQTWNGL*IRVNSHLLL*CWLCSSRLFNTHLYHGR*WKTWME*SLAKLSCALWKSFNRFRRHCSITKLSKKLQCGT*LCLFYSSSKGVCGVWPVCIFPDITPRCC*GV*WANSAIFSVIFPLRIPFRRITSTEFR*SDHNSIYFSWTNNS*GISLCLPSCS*NKFYTMQFCA*TKIRKKNWQ*ICSRFIGSF*L*SRIYSPWIHSN*V*NSAQFFGPVE*FLTYLYCALWWNFN*AQRDYFVTWIP*AL*QQSELCVEDHSARGSWHSSASC*LCYRT*LGFSGLL*WGRQQCSKTWKLFRNNNTPSFE*YV**SVSKFSIRHQCFCCRISS*IHSNWFGFLS*TTNS*QWN*NWRQIYGWRCSILSV*SRIFSSGSLSHYMYARTCKKMELSNPNLFSSVWWCYVRLQWCDPQSWVSWKLSQQFRLHMDNKSTHRFWCTSPVCKFFYRNHT*LFGSTKWILRN*YCYWPA*WSSNTIFLIQHHP*NQLIFSQ*LFTKQTRVSYCIPSLSVAKLS*STPVSKWFCNW**FYCGSNHFI*MFPRIHINWKFSSHMPSRSQS*LESSTSKV*SSLWWEYNCNEWHHLFSWVS**ISKLSRLFLACKSTPWEWHLHQFYCPSNRTNI*FHYCMGWTRPKFTSDRSVQWQYRFGISLQYFKSDSNQIPQ*FHNKWLFCAQLSRLSTKGVPTSTTCAQC*NFDGR**I*NR*YY*VSVSSRIYFSW*CNSDVQIRRTTADGWSTSSLSSALSCQ*ITARFYWSHIEPWIS*QLPKSSNVCMEHFSGKGL*YHHVCRILPDRKGI*CSSGV*WTKYSKSSAYFPQWGLFICF*YNKQWS*SISSVVSRSWQ*QKRLPDKIYSFLL*YTRIPTSWIYYQSDRWAA*QCGPLGL*SRIPTCWKKQCCVQKVFLWVSCMGCASPCLSSNFLWDS*SSNKWRNTNNRLFGRNASYLFL**WISIVIQRTHYSCMPIRWNMEQS*QDPSLCCCYMSKHQFLYLGTWKMANCEWLPL*IQNQSSFQL*PWLSWTRSCLHRMSS*WYLELEK*KTILPNYFLWRTTYTSKWK*DWNSNFIWLNSYLYLRLGIHACGLCCKGMPFLRSLE*I*NQMPSGSLWNSRTDCEWSSHWRKLWI*RHSCISM*SWFSIDWFFSEDMSTGSQLVWSAPILCAC*LWSPW*SNLWKNKWKWVQL**CGNILMQYWVSYARANKGTVPGQQTVEPSSTYVQSGQLF*SWNSSQF*KRK*NRTWKFYLRHCGIL*LQSWIFFIWIFSFDMSTKWTMGQTFTRMYHD*LWTPWRSS*CSPVWREVYFWVYCSLFLHRKAFPFRPVIKNLPIEWPLEWITTSLFR*CYWDMWRSRYSRPWL*TGKQFQN*KYCTLCL*YWLHPSWLRRKNMFS*WQLDRKAARVQSCAVW*PRNHSQWESLPN*WHNIF*FSHLFLHGGIHPFWTFS*TVHSQWNMVWNFT*LYNNQLWRPRYTSQWTEIWR*LCGWTKCFLHVPARLHDGIEWLQNQDLYN*WHMEWSNANL*SCYLPNSSPDL*WKAGRNKFRLGL*Y*LHLFSRL*AILPCCFDLCREWYLEW*STAVLTKVLW*PWYTCPRKKRRQKLYIPVRGFIQLQFSFHISGIKHQNMSSRWHLEWFITSLHRAYPNLL*KPRCASAWISEQYIRISSRKCCTVPLQKRTPSPRVYNTHLPP*SYVEWDSA*MHTPQL*TARNSCSCKCRRDGPSISWVYTDLYLSAWLLLSRWNRT*SV*IR*HLDWKSSHL*SWF*NIGERS*TCTGNTQPKAKCS**CICPKLYMERLLQFQRKETTHDLNSY*FQCFHWES*RNTEQ*QHGAATFRGI*KPGSSPNVTHISY*STCSCFCEENEGRKLGNGWLCFC*A*WSYLCISRIYSRQRLWTIWPTKTGTEYVRRFKFFKSTSWYK**FCSHCYSCAFFCTYICRIWILSL*TKDCT*NTVYRMFSS*K*QWPSSF*KSHV*HQRKVSGREGGTI*SQLEHGLHNGI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense 29659 SLC20A1::POLR1B ENSG00000144136.11::ENSG00000125630.16 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 743 TRUE 1307 FALSE NA SLC20A1 ENSG00000144136.11 protein_coding + + chr2:112645939-112663825:+ chr2:112657241:+ chr2:113403516-113421402:+ chr2:113414818:+ POLR1B ENSG00000125630.16 protein_coding + + chr2:112541915-112579818:+ chr2:112572562:+ chr2:113299492-113337395:+ chr2:113330139:+ chr2:112658993 chr2:112570662 NA NA chr2:113416570 chr2:113328239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PHO4|39-665|8.1e-138 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.07Mb];LOCAL_REARRANGEMENT:+:[68707] 7 9 7 2.31 ONLY_REF_SPLICE YES_LDAS 0.1109 GT 1.5546 AG 1.8892 ENST00000272542.8 1-778 ENST00000409894.7 1526-2859 chr2|+|[0]112646829-112647162[0]|[1]112647324-112647464[0]|[1]112647653-112647738[2]|[0]112652702-112652798[0]|[1]112657122-112657241[0]<==>chr2|+|[1]112572562-112572758[2]|[0]112573562-112573815[1]|[2]112574847-112575729[2] atggcaacgctgattaccagtactacagctgctaccgccgcttctggtcctttggtggactacctatggatgctcatcctgggcttcattattgcatttgtcttggcattctccgtgggagccaatgatgtagcaaattcttttggtacagctgtgggctcaggtgtagtgaccctgaagcaagcctgcatcctagctagcatctttgaaacagtgggctctgtcttactgggggccaaagtgagcgaaaccatccggaagggcttgattgacgtggagatgtacaactcgactcaagggctgctgatggccggctcagtcagtgctatgtttggttctgctgtgtggcaactcgtggcttcgtttttgaagctccctatttctggaacccattgtattgttggtgcaactattggtttctccctcgtggcaaaggggcaggagggtgtcaagtggtctgaactgataaaaattgtgatgtcttggttcgtgtccccactgctttctggaattatgtctggaattttattcttcctggttcgtgcattcatcctccataaggcagatccagttcctaatggtttgcgagctttgccagttttctatgcctgcacagttggaataaacctcttttccatcatgtatactggagcaccgttgctgggctttgacaaacttcctctgtggggtaccatcctcatctcggtgggatgtgcagttttctgtgcccttatcgtctggttctttgtatgtcccaggatgaagagaaaaattgaacGTAAGCAAACTATGGGCTTTCCACTTCTCACTTATCAAGACCGATCGGATAACAAACTGTATCGTCTTCAGACTCCTCAGAGTCCCTTGGTGAGACCCTCCATGTATGATTATTATGACATGGATAACTATCCAATTGGGACCAATGCCATCGTTGCTGTGATTTCTTACACTGGCTATGATATGGAAGATGCCATGATTGTGAATAAGGCCTCTTGGGAACGAGGCTTTGCCCATGGAAGTGTCTACAAGTCTGAGTTCATAGACCTCTCTGAAAAAATTAAACAAGGAGATAGTAGCCTGGTGTTTGGCATCAAACCTGGTGACCCACGCGTTCTGCAGAAGTTAGATGACGATGGATTGCCGTTTATAGGAGCAAAACTGCAGTACGGAGATCCGTATTACAGCTACCTCAACCTCAACACCGGGGAAAGTTTTGTGATGTACTATAAGAGTAAAGAAAATTGTGTTGTGGATAACATCAAAGTGTGCAGTAATGACACTGGGAGTGGAAAATTCAAGTGTGTTTGCATCACTATGAGAGTGCCTCGGAACCCAACTATCGGAGATAAATTTGCCAGTCGCCATGGGCAGAAGGGCATTTTAAGCAGATTGTGGCCGGCTGAGGACATGCCTTTTACTGAGAGTGGGATGGTCCCAGACATTCTGTTCAATCCCCATGGTTTTCCATCCCGCATGACCATTGGGATGTTAATTGAGAGTATGGCCGGGAAGTCTGCAGCTTTGCATGGTCTCTGCCATGATGCTACACCCTTCATCTTCTCAGAGGAGAACTCGGCCTTAGAATACTTTGGTGAGATGTTAAAGGCTGCTGGCTACAATTTCTATGGCACCGAGAGGTTATATAGTGGCATCAGTGGGCTAGAACTGGAAGCAGACATCTTCATAGGAGTGGTTTATTATCAGCGCTTACGCCATATGGTCTCAGACAAATTTCAAGTAAGGACAACTGGAGCCCGAGACAGAGTCACCAACCAGCCTATTGGGGGAAGAAATGTCCAGGGTGGAATCCGTTTTGGGGAGATGGAACGGGATGCGCTTTTAGCTCATGGTACATCTTTTCTCCTTCATGACCGCCTCTTCAACTGCTCAGATCGGTCGGTAGCCCATGTGTGTGTGAAGTGTGGCAGTTTACTCTCTCCACTGTTGGAGAAGCCACCCCCTTCTTGGTCTGCCATGCGCAACAGAAAATACAACTGTACTCTGTGTAGTCGCAGTGACACTATCGATACTGTTTCTGTGCCTTATGTTTTTCGGTATTTTGTAGCTGAACTGGCAGCTATGAACATCAAAGTGAAACTGGATGTTGTTTAA MATLITSTTAATAASGPLVDYLWMLILGFIIAFVLAFSVGANDVANSFGTAVGSGVVTLKQACILASIFETVGSVLLGAKVSETIRKGLIDVEMYNSTQGLLMAGSVSAMFGSAVWQLVASFLKLPISGTHCIVGATIGFSLVAKGQEGVKWSELIKIVMSWFVSPLLSGIMSGILFFLVRAFILHKADPVPNGLRALPVFYACTVGINLFSIMYTGAPLLGFDKLPLWGTILISVGCAVFCALIVWFFVCPRMKRKIERKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29663 MAT2B::HMMR ENSG00000038274.18::ENSG00000072571.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 745 FALSE NA FALSE NA MAT2B ENSG00000038274.18 protein_coding + + chr5:163503114-163519558:+ chr5:163505749:+ chr5:162930120-162946564:+ chr5:162932755:+ HMMR ENSG00000072571.20 protein_coding + + chr5:163460203-163491941:+ chr5:163469641:+ chr5:162887209-162918947:+ chr5:162896647:+ chr5:163508728 chr5:163467797 NA NA chr5:162935734 chr5:162894803 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RmlD_sub_bind-PARTIAL|30-63~|3.6e-87^DapB_N-PARTIAL|30-63~|3.8e-05^Epimerase-PARTIAL|31-63~|2.3e-26^NAD_binding_4|33-46|0.0085^GDP_Man_Dehyd-PARTIAL|62-63~|6.8e-11 HMMR_N-PARTIAL|~226-323|2.3e-129^HMMR_C-PARTIAL|~226-324|2^HMMR_N|331-459|0.0096^HMMR_C|335-382|2^HMMR_C|456-484|0.64^HMMR_N|459-605|2^HMMR_N|526-659|2^HMMR_C|537-693|2.7e-82 ["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.01Mb];LOCAL_REARRANGEMENT:+:[11169] 5 4 5 3.57 ONLY_REF_SPLICE YES_LDAS 0.1022 GT 1.6402 AG 1.7232 ENST00000694947.1 1-63 ENST00000353866.7 226-2130 chr5|+|[0]163505687-163505749[2]<==>chr5|+|[0]163469641-163469829[2]|[0]163471185-163471271[2]|[0]163471363-163471463[1]|[2]163473179-163473253[1]|[2]163473379-163473557[0]|[1]163474057-163474205[2]|[0]163475458-163475672[1]|[2]163478684-163478800[1]|[2]163482642-163482788[1]|[2]163483020-163483172[1]|[2]163483268-163483367[2]|[0]163484069-163484245[2]|[0]163490390-163490552[0]|[1]163491112-163491164[2] atggtggggcgggagaaagagctctctatacactttgttcccgggagctgtcggctggtggagATTCGTGTTCTTCTACAGGAACGTGGTGCCCAGGACAGGCGGATCCAGGATCTGGAAACTGAGTTGGAAAAGATGGAAGCAAGGCTAAATGCTGCACTAAGGGAAAAAACATCTCTCTCTGCAAATAATGCTACACTGGAAAAACAACTTATTGAATTGACCAGGACTAATGAACTACTAAAATCTAAGTTTTCTGAAAATGGTAACCAGAAGAATTTGAGAATTCTAAGCTTGGAGTTGATGAAACTTAGAAACAAAAGAGAAACAAAGATGAGGGGTATGATGGCTAAGCAAGAAGGCATGGAGATGAAGCTGCAGGTCACCCAAAGGAGTCTCGAAGAGTCTCAAGGGAAAATAGCCCAACTGGAGGGAAAACTTGTTTCAATAGAGAAAGAAAAGATTGATGAAAAATCTGAAACAGAAAAACTCTTGGAATACATCGAAGAAATTAGTTGTGCTTCAGATCAAGTGGAAAAATACAAGCTAGATATTGCCCAGTTAGAAGAAAATTTGAAAGAGAAGAATGATGAAATTTTAAGCCTTAAGCAGTCTCTTGAGGAGAATATTGTTATATTATCTAAACAAGTAGAAGATCTAAATGTGAAATGTCAGCTGCTTGAAAAAGAAAAAGAAGACCATGTCAACAGGAATAGAGAACACAACGAAAATCTAAATGCAGAGATGCAAAACTTAAAACAGAAGTTTATTCTTGAACAACAGGAACGTGAAAAGCTTCAACAAAAAGAATTACAAATTGATTCACTTCTGCAACAAGAGAAAGAATTATCTTCGAGTCTTCATCAGAAGCTCTGTTCTTTTCAAGAGGAAATGGTTAAAGAGAAGAATCTGTTTGAGGAAGAATTAAAGCAAACACTGGATGAGCTTGATAAATTACAGCAAAAGGAGGAACAAGCTGAAAGGCTGGTCAAGCAATTGGAAGAGGAAGCAAAATCTAGAGCTGAAGAATTAAAACTCCTAGAAGAAAAGCTGAAAGGGAAGGAGGCTGAACTGGAGAAAAGTAGTGCTGCTCATACCCAGGCCACCCTGCTTTTGCAGGAAAAGTATGACAGTATGGTGCAAAGCCTTGAAGATGTTACTGCTCAATTTGAAAGCTATAAAGCGTTAACAGCCAGTGAGATAGAAGATCTTAAGCTGGAGAACTCATCATTACAGGAAAAAGCGGCCAAGGCTGGGAAAAATGCAGAGGATGTTCAGCATCAGATTTTGGCAACTGAGAGCTCAAATCAAGAATATGTAAGGATGCTTCTAGATCTGCAGACCAAGTCAGCACTAAAGGAAACAGAAATTAAAGAAATCACAGTTTCTTTTCTTCAAAAAATAACTGATTTGCAGAACCAACTCAAGCAACAGGAGGAAGACTTTAGAAAACAGCTGGAAGATGAAGAAGGAAGAAAAGCTGAAAAAGAAAATACAACAGCAGAATTAACTGAAGAAATTAACAAGTGGCGTCTCCTCTATGAAGAACTATATAATAAAACAAAACCTTTTCAGCTACAACTAGATGCTTTTGAAGTAGAAAAACAGGCATTGTTGAATGAACATGGTGCAGCTCAGGAACAGCTAAATAAAATAAGAGATTCATATGCTAAATTATTGGGTCATCAGAATTTGAAACAAAAAATCAAGCATGTTGTGAAGTTGAAAGATGAAAATAGCCAACTCAAATCGGAAGTATCAAAACTCCGCTGTCAGCTTGCTAAAAAAAAACAAAGTGAGACAAAACTTCAAGAGGAATTGAATAAAGTTCTAGGTATCAAACACTTTGATCCTTCAAAGGCTTTTCATCATGAAAGTAAAGAAAATTTTGCCCTGAAGACCCCATTAAAAGAAGGCAATACAAACTGTTACCGAGCTCCTATGGAGTGTCAAGAATCATGGAAGTAA MVGREKELSIHFVPGSCRLVEIRVLLQERGAQDRRIQDLETELEKMEARLNAALREKTSLSANNATLEKQLIELTRTNELLKSKFSENGNQKNLRILSLELMKLRNKRETKMRGMMAKQEGMEMKLQVTQRSLEESQGKIAQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKNDEILSLKQSLEENIVILSKQVEDLNVKCQLLEKEKEDHVNRNREHNENLNAEMQNLKQKFILEQQEREKLQQKELQIDSLLQQEKELSSSLHQKLCSFQEEMVKEKNLFEEELKQTLDELDKLQQKEEQAERLVKQLEEEAKSRAEELKLLEEKLKGKEAELEKSSAAHTQATLLLQEKYDSMVQSLEDVTAQFESYKALTASEIEDLKLENSSLQEKAAKAGKNAEDVQHQILATESSNQEYVRMLLDLQTKSALKETEIKEITVSFLQKITDLQNQLKQQEEDFRKQLEDEEGRKAEKENTTAELTEEINKWRLLYEELYNKTKPFQLQLDAFEVEKQALLNEHGAAQEQLNKIRDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRCQLAKKKQSETKLQEELNKVLGIKHFDPSKAFHHESKENFALKTPLKEGNTNCYRAPMECQESWK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29664 FAT1::SORBS2 ENSG00000083857.15::ENSG00000154556.20 MIAPACA2 SRR8615519 SRR8652122 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FAT1 ENSG00000083857.15 protein_coding - - chr4:186587794-186726722:- chr4:186706563:- chr4:187508948-187647876:- chr4:187627717:- SORBS2 ENSG00000154556.20 protein_coding - - chr4:185585444-185956652:- chr4:185775366:- chr4:186506598-186877806:- chr4:186696520:- chr4:186687587,chr4:186687589 chr4:185795183,chr4:185795182 NA NA chr4:187608741,chr4:187608743 chr4:186716337,chr4:186716336 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FAT1:FoundationOne_panel","FAT1:Oncogene","FAT1:ArcherDX_panel"];["SORBS2:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.63Mb] 5 7 5 6.7 ONLY_REF_SPLICE YES_LDAS 0.1395 GT 1.7056 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE FAT atypical cadherin 1 1 Yes oral squamous cell, chemorefractory CLL, head and neck, pancreatic acinar cell carcinoma pancreatic epithelial, leukaemia_lymphoma TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 29667 FAAP100::NPLOC4 ENSG00000185504.17::ENSG00000182446.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE TRUE TRUE 750 TRUE 1313 TRUE 510 FAAP100 ENSG00000185504.17 protein_coding - - chr17:81539885-81553961:- chr17:81552166:- chr17:79506911-79520987:- chr17:79519192:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81559416:- chr17:79523913-79615495:- chr17:79526442:- chr17:81552086,chr17:81552090 chr17:81561166,chr17:81561167 NA NA chr17:79519112,chr17:79519116 chr17:79528192,chr17:79528193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 77 20 77 20 ONLY_REF_SPLICE YES_LDAS 0.8387 GT 1.6895 AG 1.7968 ENST00000443656.6 1-165 ENST00000571714.5 442-549 chr17|-|[2]81552166-81552330[0]<==>chr17|-|[2]81559309-81559416[0] atggccggcgccgcgccgcgggtccgctacctggcgggcttctgctgccctctcgggggcctggcggcgggcaagccccgcgtgctgtgccatgaggcagaggtcttcctgtccaccgggagcgagctcgtctacgtgtacgaccaggagggcgggctgctgaccGCACAGTTGGCGGGCAGCTCCCAGGTCTCCATGAGTACGGCGCCGTCGGGGGCTCCACACACACGGCCACTGCAGCCATGTGGGCCTGTCAGCACTGCACGTTCATGA MAGAAPRVRYLAGFCCPLGGLAAGKPRVLCHEAEVFLSTGSELVYVYDQEGGLLTAQLAGSSQVSMSTAPSGAPHTRPLQPCGPVSTARS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29669 AFG3L1P::MC1R ENSG00000223959.11::ENSG00000258839.4 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE TRUE TRUE 752 FALSE NA FALSE NA AFG3L1P ENSG00000223959.11 transcribed_unitary_pseudogene + + chr16:89972581-90002161:+ chr16:89972765:+ chr16:90038989-90068569:+ chr16:90039173:+ MC1R ENSG00000258839.4 protein_coding + + chr16:89912119-89920973:+ chr16:89917876:+ chr16:89978527-89987381:+ chr16:89984284:+ chr16:89974467,chr16:89974467,chr16:89974464 chr16:89917782,chr16:89917779,chr16:89917776 NA NA chr16:90040875,chr16:90040875,chr16:90040872 chr16:89984190,chr16:89984187,chr16:89984184 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.05Mb];LOCAL_REARRANGEMENT:+:[51609] 39 21 39 21 ONLY_REF_SPLICE YES_LDAS 0.5188 GT 1.5656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29670 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE FALSE TRUE 748 TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124244450:+ chr7:123672180-124129626:+ chr7:123884504:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MYH9:Oncogene"] 34 71 34 60.5 ONLY_REF_SPLICE YES_LDAS 0.8171 GT 1.9899 AG 1.2419 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29671 MYH9::ENSG00000242593 ENSG00000100345.23::ENSG00000242593.8 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE FALSE TRUE 749 TRUE 1312 TRUE 509 MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36387807:- chr22:36677326-36784055:- chr22:36783852:- ENSG00000242593 ENSG00000242593.8 lncRNA + + chr7:124032126-124489572:+ chr7:124287289:+ chr7:123672180-124129626:+ chr7:123927343:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MYH9:Oncogene"] 21 42 21 10.5 ONLY_REF_SPLICE YES_LDAS 0.2724 GT 1.9899 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29673 FAAP100::NPLOC4 ENSG00000185504.17::ENSG00000182446.15 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE TRUE TRUE 751 TRUE 1313 TRUE 510 FAAP100 ENSG00000185504.17 protein_coding - - chr17:81539885-81553961:- chr17:81553074:- chr17:79506911-79520987:- chr17:79520100:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81559416:- chr17:79523913-79615495:- chr17:79526442:- chr17:81552086,chr17:81552090 chr17:81561166,chr17:81561167 NA NA chr17:79519112,chr17:79519116 chr17:79528192,chr17:79528193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 13 0 13 0 ONLY_REF_SPLICE YES_LDAS 0.1124 GT 1.8256 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29674 KATNB1::NLRC5 ENSG00000140854.13::ENSG00000140853.17 CAL851 SRR8615528 SRR8639194 BREAST carcinoma primary star-fusion TRUE TRUE TRUE 753 FALSE NA FALSE NA KATNB1 ENSG00000140854.13 protein_coding + + chr16:57735739-57757244:+ chr16:57741817:+ chr16:57769651-57791156:+ chr16:57775729:+ NLRC5 ENSG00000140853.17 protein_coding + + chr16:56989485-57083531:+ chr16:57067736:+ chr16:57023397-57117443:+ chr16:57101648:+ chr16:57743358,chr16:57743356 chr16:57067453,chr16:57067448 NA NA chr16:57777270,chr16:57777268 chr16:57101365,chr16:57101360 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NBCH_WD40|17-57|0.00037^WDR54|19-56|0.0016^Nucleoporin_N|19-58|0.066^Cytochrom_D1|19-50|2.1^WD40|20-53|9.3e-07^ANAPC4_WD40|34-70|0.0011^WD40_like|37-100|0.025^RAB3GAP2_N|38-117|0.00021^Ge1_WD40|41-74|0.43^eIF2A|45-125|0.00011^RMC1_N|47-99|0.13^WD40|58-95|9.7e-11^WDR54|62-141|1e-05^ANAPC4_WD40|65-113|5.9e-05^PROPPIN-PARTIAL|66-183~|1.5e-06^Nucleoporin_N|70-138|0.00085^NBCH_WD40|76-141|2.8e-08^ANAPC4_WD40|79-150|4.1e-08^Nup160|79-104|0.027^eIF2A|81-171|9.2e-06^RMC1_N|83-140|0.23^Cytochrom_D1|83-169|0.00011^WD40|100-137|2e-14^Ge1_WD40|107-138|0.022^WD40_like|111-171|0.008^Nup160|123-144|0.21^DUF6546|133-183|1.7e-05^WD40|143-179|5.9e-17^RMC1_N-PARTIAL|144-183~|8.9e-06^NBCH_WD40-PARTIAL|145-183~|2.4e-05^ANAPC4_WD40-PARTIAL|148-183~|9e-10^Ge1_WD40|148-180|0.00017^WDR54|149-181|0.099^Nucleoporin_N|151-183|0.044^RAB3GAP2_N-PARTIAL|153-183~|0.67^Nup160-PARTIAL|161-183~|0.0049 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.65Mb] 13 7 13 7 ONLY_REF_SPLICE YES_LDAS 0.1729 GT 1.8892 AG 1.9219 ENST00000566726.5 1-183 ENST00000262510.10 4407-5601 chr16|+|[0]57737016-57737067[0]|[1]57741687-57741817[2]<==>chr16|+|[2]57067736-57067828[1]|[2]57069836-57069919[1]|[2]57070535-57070618[1]|[2]57074600-57074683[1]|[2]57076819-57076902[1]|[2]57077296-57077379[1]|[2]57077719-57077802[1]|[2]57077943-57078020[1]|[2]57079050-57079133[1]|[2]57079221-57079292[1]|[2]57079546-57079629[1]|[2]57081098-57081181[1]|[2]57081527-57081610[1]|[2]57082417-57082528[2] atgatccaggatcgtgacagatgtgcacaggctgctgctgttgctgctgtggaagagatcgtcgcgcatgccagcaacgtgtcctcactggtgctgggcaaagcctccgggcggctgctggctacaggcggggatgactgccgcgtcaacctgtggtccatcaacaagcccaactgcatcatgCTTGTCTCAGGTTAACCTCTGTGAGGACGATGATGCCAGTTCCCTGCTGCTGCAGAGCCTCCTGCTGTCCCTCTCTGAGCTGAAGACATTTCGGCTGACCTCCAGCTGTGTGAGCACCGAGGGCCTCGCCCACCTGGCATCTGGTCTGGGCCACTGCCACCACTTGGAGGAGCTGGACTTGTCTAACAATCAATTTGATGAGGAGGGCACCAAGGCGCTGATGAGGGCCCTTGAGGGGAAATGGATGCTAAAGAGGCTGGACCTCAGTCACCTTCTGCTGAACAGCTCCACCTTGGCCTTGCTTACTCACAGACTAAGCCAGATGACCTGCCTGCAGAGCCTCAGACTGAACAGGAACAGTATCGGTGATGTCGGTTGCTGCCACCTTTCTGAGGCTCTCAGGGCTGCCACCAGCCTAGAGGAGCTGGACTTGAGCCACAACCAGATTGGAGACGCTGGTGTCCAGCACTTAGCTACCATCCTGCCTGGGCTGCCAGAGCTCAGGAAGATAGACCTCTCAGGGAATAGCATCAGCTCAGCCGGGGGAGTGCAGTTGGCAGAGTCTCTCGTTCTTTGCAGGCGCCTGGAGGAGTTGATGCTTGGCTGCAATGCCCTGGGGGATCCCACAGCCCTGGGGCTGGCTCAGGAGCTGCCCCAGCACCTGAGGGTCCTACACCTACCATTCAGCCATCTGGGCCCAGGTGGGGCCCTGAGCCTGGCCCAGGCCCTGGATGGATCCCCCCATTTGGAAGAGATCAGCTTGGCGGAAAACAACCTGGCTGGAGGGGTCCTGCGTTTCTGTATGGAGCTCCCGCTGCTCAGACAGATAGACCTGGTTTCCTGTAAGATTGACAACCAGACTGCCAAGCTCCTCACCTCCAGCTTCACGAGCTGCCCTGCCCTGGAAGTAATCTTGCTGTCCTGGAATCTCCTCGGGGATGAGGCAGCTGCCGAGCTGGCCCAGGTGCTGCCGCAGATGGGCCGGCTGAAGAGAGTGGACCTGGAGAAGAATCAGATCACAGCTTTGGGGGCCTGGCTCCTGGCTGAAGGACTGGCCCAGGGGTCTAGCATCCAAGTCATCCGCCTCTGGAATAACCCCATTCCCTGCGACATGGCCCAGCACCTGAAGAGCCAGGAGCCCAGGCTGGACTTTGCCTTCTTTGACAACCAGCCCCAGGCCCCTTGGGGTACTTGA MIQDRDRCAQAAAVAAVEEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMLVSG*PL*GR*CQFPAAAEPPAVPL*AEDISADLQLCEHRGPRPPGIWSGPLPPLGGAGLV*QSI**GGHQGADEGP*GEMDAKEAGPQSPSAEQLHLGLAYSQTKPDDLPAEPQTEQEQYR*CRLLPPF*GSQGCHQPRGAGLEPQPDWRRWCPALSYHPAWAARAQEDRPLRE*HQLSRGSAVGRVSRSLQAPGGVDAWLQCPGGSHSPGAGSGAAPAPEGPTPTIQPSGPRWGPEPGPGPGWIPPFGRDQLGGKQPGWRGPAFLYGAPAAQTDRPGFL*D*QPDCQAPHLQLHELPCPGSNLAVLESPRG*GSCRAGPGAAADGPAEESGPGEESDHSFGGLAPG*RTGPGV*HPSHPPLE*PHSLRHGPAPEEPGAQAGLCLL*QPAPGPLGYL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29678 SORL1::PCCA ENSG00000137642.13::ENSG00000175198.17 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE FALSE TRUE 757 FALSE NA FALSE NA SORL1 ENSG00000137642.13 protein_coding + + chr11:121452314-121633763:+ chr11:121615055:+ chr11:121323023-121504472:+ chr11:121485764:+ PCCA ENSG00000175198.17 protein_coding + + chr13:100089015-100530437:+ chr13:100425633:+ chr13:100741269-101182691:+ chr13:101077887:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pur_ac_phosph_N|96-121|1.1^Sortilin-Vps10|134-586|1.4e-109^BNR_6|136-148|0.00031^BNR|136-147|0.025^BNR_6|231-241|0.00021^BNR|232-241|0.021^BNR_6|278-283|3.7^BNR|442-451|0.027^BNR|521-531|2^BNR|563-573|0.0014^Sortilin_C|588-752|2.1e-44^Ldl_recept_b|802-836|0.00026^Ldl_recept_b|845-883|3.1e-06^Ldl_recept_b|890-929|2.2e-09^Ldl_recept_b|933-969|1.2e-07^Ldl_recept_b|972-987|0.0099^Ldl_recept_a|1077-1112|7.3e-13^Ldl_recept_a|1117-1153|1e-10^Ldl_recept_a|1157-1192|4.3e-16^Ldl_recept_a|1198-1235|1.2e-16^Ldl_recept_a|1239-1271|2.3e-13^Ldl_recept_a|1280-1309|5.2e-08^Ldl_recept_a|1325-1359|2.4e-14^Ldl_recept_a|1368-1403|2.3e-14^Ldl_recept_a|1417-1453|4.6e-15^Ldl_recept_a|1470-1506|7e-12^Ldl_recept_a|1513-1549|2.1e-12^fn3|1557-1629|1e-11^Pur_ac_phosph_N|1560-1630|0.00015^Interfer-bind|1585-1635|5.6e-05^fn3_2|1602-1636|1.6^DUF1410|1602-1626|0.14^fn3|1653-1735|1.7e-11^Interfer-bind|1685-1728|0.026^fn3_2|1694-1731|2.2^Pur_ac_phosph_N|1701-1742|0.0003^fn3|1749-1829|8.4e-05^Interfer-bind|1793-1820|5.3^Pur_ac_phosph_N|1795-1824|0.83^fn3_2|1842-1863|0.027^fn3|1845-1866|0.12^fn3|1934-2008|1.5e-10^Pur_ac_phosph_N|1935-2017|1.5e-07^fn3_2|1937-1954|0.1^Interfer-bind|1967-2016|0.025^DUF1410|1989-2004|0.058^fn3_2|2039-2099|0.0025^Interfer-bind|2056-2101|0.0082^fn3|2075-2100|0.00019^Pur_ac_phosph_N|2075-2099|0.2^DUF1410|2076-2095|0.042 none ["SORL1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr13] 35 8 35 8 ONLY_REF_SPLICE YES_LDAS 0.3657 GT 1.8323 AG 1.4566 ENST00000260197.12 1-5604 ENST00000376285.6 1747-2187 chr11|+|[0]121452332-121452616[2]|[0]121470007-121470123[2]|[0]121478118-121478243[2]|[0]121488032-121488193[2]|[0]121490043-121490110[1]|[2]121496869-121497049[2]|[0]121513003-121513104[2]|[0]121514152-121514321[1]|[2]121520657-121520849[2]|[0]121522586-121522703[0]|[1]121522916-121522989[2]|[0]121532464-121532552[1]|[2]121543548-121543726[0]|[1]121545243-121545429[1]|[2]121549960-121550088[1]|[2]121550585-121550670[0]|[1]121553937-121554109[2]|[0]121555187-121555318[2]|[0]121557314-121557405[1]|[2]121558591-121558837[2]|[0]121559519-121559657[0]|[1]121566940-121567113[0]|[1]121570157-121570270[0]|[1]121574241-121574363[0]|[1]121577281-121577400[0]|[1]121583458-121583583[0]|[1]121586222-121586329[0]|[1]121588020-121588151[0]|[1]121589259-121589390[0]|[1]121590040-121590174[0]|[1]121591001-121591156[0]|[1]121595623-121595772[0]|[1]121604193-121604324[0]|[1]121605113-121605239[1]|[2]121605402-121605571[0]|[1]121606845-121606957[2]|[0]121607186-121607290[2]|[0]121608104-121608176[0]|[1]121611076-121611158[2]|[0]121612736-121612832[0]|[1]121614871-121615055[2]<==>chr13|+|[0]100425633-100425731[2]|[0]100449252-100449305[2]|[0]100515427-100515567[2]|[0]100527675-100527752[2]|[0]100530098-100530166[2] atggcgacacggagcagcaggagggagtcgcgactcccgttcctattcaccctggtcgcactgctgccgcccggagctctctgcgaagtctggacgcagaggctgcacggcggcagcgcgcccttgccccaggaccggggcttcctcgtggtgcagggcgacccgcgcgagctgcggctgtgggcgcgcggggatgccaggggggcgagccgcgcggacgagaagccgctccggaggaaacggagcgctgccctgcagcccgagcccatcaaggtgtacggacaggttagtctgaatgattcccacaatcagatggtggtgcactgggctggagagaaaagcaacgtgatcgtggccttggcccgagatagcctggcattggcgaggcccaagagcagtgatgtgtacgtgtcttacgactatggaaaatcattcaagaaaatttcagacaagttaaactttggcttgggaaataggagtgaagctgttatcgcccagttctaccacagccctgcggacaacaagcggtacatctttgcagacgcttatgcccagtacctctggatcacgtttgacttctgcaacactcttcaaggcttttccatcccatttcgggcagctgatctcctcctacacagtaaggcctccaaccttctcttgggctttgacaggtcccaccccaacaagcagctgtggaagtcagatgactttggccagacctggatcatgattcaggaacatgtcaagtccttttcttggggaattgatccctatgacaaaccaaataccatctacattgaacgacatgaaccctctggctactccactgtcttccgaagtacagatttcttccagtcccgggaaaaccaggaagtgatccttgaggaagtgagagattttcagcttcgggacaagtacatgtttgctacaaaggtggtgcatctcttgggcagtgaacagcagtcttctgtccagctctgggtctcctttggccggaagcccatgagagcagcccagtttgtcacaagacatcctattaatgaatattacatcgcagatgcctccgaggaccaggtgtttgtgtgtgtcagccacagtaacaaccgcaccaatttatacatctcagaggcagaggggctgaagttctccctgtccttggagaacgtgctctattacagcccaggaggggccggcagtgacaccttggtgaggtattttgcaaatgaaccatttgctgacttccaccgagtggaaggattgcaaggagtctacattgctactctgattaatggttctatgaatgaggagaacatgagatcggtcatcacctttgacaaagggggaacctgggagtttcttcaggctccagccttcacgggatatggagagaaaatcaattgtgagctttcccagggctgttcccttcatctggctcagcgcctcagtcagctcctcaacctccagctccggagaatgcccatcctgtccaaggagtcggctccaggcctcatcatcgccactggctcagtgggaaagaacttggctagcaagacaaacgtgtacatctctagcagtgctggagccaggtggcgagaggcacttcctggacctcactactacacatggggagaccacggcggaatcatcacggccattgcccagggcatggaaaccaacgagctaaaatacagtaccaatgaaggggagacctggaaaacattcatcttctctgagaagccagtgtttgtgtatggcctcctcacagaacctggggagaagagcactgtcttcaccatctttggctcgaacaaagagaatgtccacagctggctgatcctccaggtcaatgccacggatgccttgggagttccctgcacagagaatgactacaagctgtggtcaccatctgatgagcgggggaatgagtgtttgctgggacacaagactgttttcaaacggcggaccccccatgccacatgcttcaatggagaggactttgacaggccggtggtcgtgtccaactgctcctgcacccgggaggactatgagtgtgacttcggtttcaagatgagtgaagatttgtcattagaggtttgtgttccagatccggaattttctggaaagtcatactcccctcctgtgccttgccctgtgggttctacttacaggagaacgagaggctaccggaagatttctggggacacttgtagcggaggagatgttgaagcgcgactggaaggagagctggtcccctgtcccctggcagaagagaacgagttcattctgtatgctgtgaggaaatccatctaccgctatgacctggcctcgggagccaccgagcagttgcctctcaccgggctacgggcagcagtggccctggactttgactatgagcacaactgtttgtattggtccgacctggccttggacgtcatccagcgcctctgtttgaatggaagcacagggcaagaggtgatcatcaattctggcctggagacagtagaagctttggcttttgaacccctcagccagctgctttactgggtagatgcaggcttcaaaaagattgaggtagctaatccagatggcgacttccgactcacaatcgtcaattcctctgtgcttgatcgtcccagggctctggtcctcgtgccccaagagggggtgatgttctggacagactggggagacctgaagcctgggatttatcggagcaatatggatggttctgctgcctatcacctggtgtctgaggatgtgaagtggcccaatggcatctctgtggacgaccagtggatttactggacggatgcctacctggagtgcatagagcggatcacgttcagtggccagcagcgctctgtcattctggacaacctcccgcacccctatgccattgctgtctttaagaatgaaatctactgggatgactggtcacagctcagcatattccgagcttccaaatacagtgggtcccagatggagattctggcaaaccagctcacggggctcatggacatgaagattttctacaaggggaagaacactggaagcaatgcctgtgtgcccaggccatgcagcctgctgtgcctgcccaaggccaacaacagtagaagctgcaggtgtccagaggatgtgtccagcagtgtgcttccatcaggggacctgatgtgtgactgccctcagggctatcagctcaagaacaatacctgtgtcaaacaagagaacacctgtcttcgcaaccagtatcgctgcagcaacgggaactgtatcaacagcatttggtggtgtgactttgacaacgactgtggagacatgagcgatgagagaaactgccctaccaccatctgtgacctggacacccagtttcgttgccaggagtctgggacttgtatcccactgtcctataaatgtgaccttgaggatgactgtggagacaacagtgatgaaagtcattgtgaaatgcaccagtgccggagtgacgagtacaactgcagttccggcatgtgcatccgctcctcctgggtatgtgacggggacaacgactgcagggactggtctgatgaagccaactgtaccgccatctatcacacctgtgaggcctccaacttccagtgccgaaacgggcactgcatcccccagcggtgggcgtgtgacggggatacggactgccaggatggttccgatgaggatccagtcaactgtgagaagaagtgcaatggattccgctgcccaaacggcacttgcatcccatccagcaaacattgtgatggtctgcgtgattgctctgatggctccgatgaacagcactgcgagcccctctgtacgcacttcatggactttgtgtgtaagaaccgccagcagtgcctgttccactccatggtctgtgacggaatcatccagtgccgcgacgggtccgatgaggatgcggcgtttgcaggatgctcccaagatcctgagttccacaaggtatgtgatgagttcggtttccagtgtcagaatggagtgtgcatcagtttgatttggaagtgcgacgggatggatgattgcggcgattattctgatgaagccaactgcgaaaaccccacagaagccccaaactgctcccgctacttccagtttcggtgtgagaatggccactgcatccccaacagatggaaatgtgacagggagaacgactgtggggactggtctgatgagaaggattgtggagattcacatattcttcccttctcgactcctgggccctccacgtgtctgcccaattactaccgctgcagcagtgggacctgcgtgatggacacctgggtgtgcgacgggtaccgagattgtgcagatggctctgacgaggaagcctgccccttgcttgcaaacgtcactgctgcctccactcccacccaacttgggcgatgtgaccgatttgagttcgaatgccaccaaccgaagacgtgtattcccaactggaagcgctgtgacggccaccaagattgccaggatggccgggacgaggccaattgccccacacacagcaccttgacttgcatgagcagggagttccagtgcgaggacggggaggcctgcattgtgctctcggagcgctgcgacggcttcctggactgctcggacgagagcgatgaaaaggcctgcagtgatgagttgactgtgtacaaagtacagaatcttcagtggacagctgacttctctggggatgtgactttgacctggatgaggcccaaaaaaatgccctctgcttcttgtgtatataatgtctactacagggtggttggagagagcatatggaagactctggagacccacagcaataagacaaacactgtattaaaagtcttgaaaccagataccacgtatcaggttaaagtacaggttcagtgtctcagcaaggcacacaacaccaatgactttgtgaccctgaggaccccagagggattgccagatgcccctcgaaatctccagctgtcactccccagggaagcagaaggtgtgattgtaggccactgggctcctcccatccacacccatggcctcatccgtgagtacattgtagaatacagcaggagtggttccaagatgtgggcctcccagagggctgctagtaactttacagaaatcaagaacttattggtcaacactctatacaccgtcagagtggctgcggtgactagtcgtggaataggaaactggagcgattctaaatccattaccaccataaaaggaaaagtgatcccaccaccagatatccacattgacagctatggtgaaaattatctaagcttcaccctgaccatggagagtgatatcaaggtgaatggctatgtggtgaaccttttctgggcatttgacacccacaagcaagagaggagaactttgaacttccgaggaagcatattgtcacacaaagttggcaatctgacagctcatacatcctatgagatttctgcctgggccaagactgacttgggggatagccctctggcatttgagcatgttatgaccagaggggttcgcccacctgcacctagcctcaaggccaaagccatcaaccagactgcagtggaatgtacctggaccggcccccggaatgtgGTGGAAGTTGATGGGTCGAAACTAAATGTGACCAGCACGTGGAACCTGGCTTCGCCCTTATTGTCTGTCAGCGTTGATGGCACTCAGAGGACTGTCCAGTGTCTTTCTCGAGAAGCAGGTGGAAACATGAGCATTCAGTTTCTTGGTACAGTGTACAAGGTGAATATCTTAACCAGACTTGCCGCAGAATTGAACAAATTTATGCTGGAAAAAGTGACTGAGGACACAAGCAGTGTTCTGCGTTCCCCGATGCCCGGAGTGGTGGTGGCCGTCTCTGTCAAGCCTGGAGACGCGGTAGCAGAAGGTCAAGAAATTTGTGTGATTGAAGCCATGAAAATGCAGAATAGTATGACAGCTGGGAAAACTGGCACGGTGAAATCTGTGCACTGTCAAGCTGGAGACACAGTTGGAGAAGGGGATCTGCTCGTGGAGCTGGAATGA MATRSSRRESRLPFLFTLVALLPPGALCEVWTQRLHGGSAPLPQDRGFLVVQGDPRELRLWARGDARGASRADEKPLRRKRSAALQPEPIKVYGQVSLNDSHNQMVVHWAGEKSNVIVALARDSLALARPKSSDVYVSYDYGKSFKKISDKLNFGLGNRSEAVIAQFYHSPADNKRYIFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHSKASNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHVKSFSWGIDPYDKPNTIYIERHEPSGYSTVFRSTDFFQSRENQEVILEEVRDFQLRDKYMFATKVVHLLGSEQQSSVQLWVSFGRKPMRAAQFVTRHPINEYYIADASEDQVFVCVSHSNNRTNLYISEAEGLKFSLSLENVLYYSPGGAGSDTLVRYFANEPFADFHRVEGLQGVYIATLINGSMNEENMRSVITFDKGGTWEFLQAPAFTGYGEKINCELSQGCSLHLAQRLSQLLNLQLRRMPILSKESAPGLIIATGSVGKNLASKTNVYISSSAGARWREALPGPHYYTWGDHGGIITAIAQGMETNELKYSTNEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIFGSNKENVHSWLILQVNATDALGVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPVVVSNCSCTREDYECDFGFKMSEDLSLEVCVPDPEFSGKSYSPPVPCPVGSTYRRTRGYRKISGDTCSGGDVEARLEGELVPCPLAEENEFILYAVRKSIYRYDLASGATEQLPLTGLRAAVALDFDYEHNCLYWSDLALDVIQRLCLNGSTGQEVIINSGLETVEALAFEPLSQLLYWVDAGFKKIEVANPDGDFRLTIVNSSVLDRPRALVLVPQEGVMFWTDWGDLKPGIYRSNMDGSAAYHLVSEDVKWPNGISVDDQWIYWTDAYLECIERITFSGQQRSVILDNLPHPYAIAVFKNEIYWDDWSQLSIFRASKYSGSQMEILANQLTGLMDMKIFYKGKNTGSNACVPRPCSLLCLPKANNSRSCRCPEDVSSSVLPSGDLMCDCPQGYQLKNNTCVKQENTCLRNQYRCSNGNCINSIWWCDFDNDCGDMSDERNCPTTICDLDTQFRCQESGTCIPLSYKCDLEDDCGDNSDESHCEMHQCRSDEYNCSSGMCIRSSWVCDGDNDCRDWSDEANCTAIYHTCEASNFQCRNGHCIPQRWACDGDTDCQDGSDEDPVNCEKKCNGFRCPNGTCIPSSKHCDGLRDCSDGSDEQHCEPLCTHFMDFVCKNRQQCLFHSMVCDGIIQCRDGSDEDAAFAGCSQDPEFHKVCDEFGFQCQNGVCISLIWKCDGMDDCGDYSDEANCENPTEAPNCSRYFQFRCENGHCIPNRWKCDRENDCGDWSDEKDCGDSHILPFSTPGPSTCLPNYYRCSSGTCVMDTWVCDGYRDCADGSDEEACPLLANVTAASTPTQLGRCDRFEFECHQPKTCIPNWKRCDGHQDCQDGRDEANCPTHSTLTCMSREFQCEDGEACIVLSERCDGFLDCSDESDEKACSDELTVYKVQNLQWTADFSGDVTLTWMRPKKMPSASCVYNVYYRVVGESIWKTLETHSNKTNTVLKVLKPDTTYQVKVQVQCLSKAHNTNDFVTLRTPEGLPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGKVIPPPDIHIDSYGENYLSFTLTMESDIKVNGYVVNLFWAFDTHKQERRTLNFRGSILSHKVGNLTAHTSYEISAWAKTDLGDSPLAFEHVMTRGVRPPAPSLKAKAINQTAVECTWTGPRNVVEVDGSKLNVTSTWNLASPLLSVSVDGTQRTVQCLSREAGGNMSIQFLGTVYKVNILTRLAAELNKFMLEKVTEDTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29679 STK24::LINC03082 ENSG00000102572.15::ENSG00000275830.4 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98576745:- chr13:99097439-99230194:- chr13:99228999:- LINC03082 ENSG00000275830.4 lncRNA - - chr13:109988097-110129136:- chr13:110036971:- chr13:110640444-110781483:- chr13:110689318:- chr13:98528387,chr13:98528389 chr13:110093132,chr13:110093131 NA NA chr13:99180641,chr13:99180643 chr13:110745479,chr13:110745478 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 32 2 32 2 ONLY_REF_SPLICE YES_LDAS 0.2892 GT 1.8323 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29680 STK17B::HECW2 ENSG00000081320.11::ENSG00000138411.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STK17B ENSG00000081320.11 protein_coding - - chr2:196133583-196176503:- chr2:196156439:- chr2:196998307-197041227:- chr2:197021163:- HECW2 ENSG00000138411.13 protein_coding - - chr2:196189099-196593684:- chr2:196228254:- chr2:197053823-197458408:- chr2:197092978:- chr2:196146787,chr2:196146791 chr2:196232973,chr2:196232974 NA NA chr2:197011511,chr2:197011515 chr2:197097697,chr2:197097698 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PK_Tyr_Ser-Thr|35-287|3.2e-38^Kinase-like|35-103|0.38^Pkinase|36-293|3.4e-73^ABC1|98-188|5.7e-09^Kinase-like|140-238|8.4e-08^DUF2201_N-PARTIAL|276-335~|4.4e-05 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.02Mb];LOCAL_REARRANGEMENT:-:[17867] 29 11 29 11 ONLY_REF_SPLICE YES_LDAS 0.3403 GT 1.5058 AG 1.8892 ENST00000409228.5 1-335 ENST00000644421.1 1489-2443 chr2|-|[1]196156439-196156651[2]|[1]196163262-196163383[0]<==>chr2|-|[2]196201277-196201388[2]|[1]196215865-196215977[0]|[2]196217008-196217093[1]|[0]196220039-196220153[0]|[2]196220795-196220941[0]|[2]196222211-196222340[2]|[1]196225772-196225870[2]|[1]196228102-196228254[2] atgtcgaggaggagatttgattgccgaagtatttcaggcctactaactacaactcctcaaattccaataaaaatggaaaactttaataatttctatatacttacatctaaagagctagggagaggaaaatttgctgtggttagacaatgtatatcaaaatctactggccaagaatatgctgcaaaatttctaaaaaagagaagaagaggacaggattgtcgagcagaaattttacacgagattgctgtgcttgaattggcaaagtcttgtccccgtgttattaatcttcatgaggtctatgaaaatacaagtgaaatcattttgatattggaataGCTGGATTACAGTGGGCCTTCTAGAGAGTTTTTCTTCCTGGTATCCAGAGAACTCTTTAACCCATATTATGGCTTATTTGAATATTCAGCCAATGACACATACACAGTACAAATAAGTCCTATGTCTGCTTTTGTAGACAATCACCATGAATGGTTCCGATTCAGTGGTAGGATCCTTGGTCTTGCACTAATACACCAGTATTTGTTGGATGCCTTCTTCACACGGCCCTTTTATAAGGCTCTTCTCAGAATTCTATGTGACCTGAGTGACCTAGAATACCTTGATGAAGAGTTCCATCAGAGCCTGCAGTGGATGAAAGACAATGATATCCATGACATCCTAGACCTCACGTTCACTGTGAACGAAGAAGTATTTGGGCAGATAACTGAACGAGAATTAAAGCCAGGGGGTGCCAATATCCCAGTTACAGAGAAGAACAAGAAGGAGTACATCGAGAGGATGGTGAAGTGGAGGATTGAGAGGGGTGTTGTACAGCAAACAGAGAGCTTAGTGCGTGGCTTCTATGAGGTGGTGGATGCCAGGCTGGTATCTGTTTTTGATGCAAGAGAACTGGAATTGGTCATCGCAGGCACAGCTGAAATAGACCTAAGTGATTGGAGAAACAACACAGAATATAGAGGAGGATACCATGACAATCATATTGTAATTCGGTGGTTCTGGGCTGCAGTGGAAAGATTCAACAATGAACAACGACTAAGGTTGTTACAGTTTGTTACAGGCACATCCAGCATTCCCTATGAAGGATTTGCTTCACTCCGAGGGAGTAACGGCCCAAGAAGATTCTGTGTGGAGAAATGGGGGAAAATCACTGCTCTTCCCAGAGCGCATACATGTTTTAACCGTCTGGATCTGCCTCCCTACCCATCCTTTTCCATGCTTTATGAAAAACTGTTGACAGCAGTTGAAGAAACCAGTACTTTTGGACTTGAGTGA MSRRRFDCRSISGLLTTTPQIPIKMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILE*LDYSGPSREFFFLVSRELFNPYYGLFEYSANDTYTVQISPMSAFVDNHHEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEFHQSLQWMKDNDIHDILDLTFTVNEEVFGQITERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEIDLSDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASLRGSNGPRRFCVEKWGKITALPRAHTCFNRLDLPPYPSFSMLYEKLLTAVEETSTFGLE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 17B CAMK DAPK O94768 FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 197008284 FALSE 197208488 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29682 ARID5B::LRRC20 ENSG00000150347.17::ENSG00000172731.15 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE TRUE TRUE 758 FALSE NA FALSE NA ARID5B ENSG00000150347.17 protein_coding + + chr10:61901684-62096944:+ chr10:61902413:+ chr10:63661443-63856703:+ chr10:63662172:+ LRRC20 ENSG00000172731.15 protein_coding - - chr10:70298970-70382650:- chr10:70301508:- chr10:72058726-72142406:- chr10:72061264:- chr10:61905327,chr10:61905331,chr10:61905335,chr10:61905342,chr10:61905365 chr10:70318865,chr10:70318865,chr10:70318865,chr10:70318865,chr10:70318865 NA NA chr10:63665086,chr10:63665090,chr10:63665094,chr10:63665101,chr10:63665124 chr10:72078621,chr10:72078621,chr10:72078621,chr10:72078621,chr10:72078621 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:8.20Mb] 20 8 20 8 ONLY_REF_SPLICE YES_LDAS 0.2381 GT 1.8062 AG 1.9219 ENST00000681100.1 1-276 ENST00000358141.6 251-405 chr10|+|[0]61901710-61901730[2]|[0]61902159-61902413[2]<==>chr10|-|[2]70301354-70301508[1] atggagcccaactcactccagtgggtcggctcaccgtgtggcttgcacggaccttacattttctacaaggcttttcaattccaccttgaaggcaaaccaagaattttgtcccttggcgactttttctttgtaagatgtacgccaaaggatccgatttgcatagcggagctccagctgttgtgggaagagaggaccagccggcaacttttatccagctctaaactttatttcctcccagaagacactccccagggcagaaatagcgaccatggcgagATGTGCCCGTGGAGAAGCTGGCCGCCATGCCAGCCTTGCGCAGCATCAACCTCCGCTTCAACCCACTCAACGCCGAGGTGCGCGTGATCGCCCCGCCGCTCATCAAGTTTGACATGCTCATGTCTCCGGAAGGCGCAAGAGCCCCCCTACCTTAG MEPNSLQWVGSPCGLHGPYIFYKAFQFHLEGKPRILSLGDFFFVRCTPKDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEMCPWRSWPPCQPCAASTSASTHSTPRCA*SPRRSSSLTCSCLRKAQEPPYL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29684 UGGT2::GRIK4 ENSG00000102595.22::ENSG00000149403.13 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE TRUE TRUE 760 FALSE NA FALSE NA UGGT2 ENSG00000102595.22 protein_coding - - chr13:95801580-96053482:- chr13:96053155:- chr13:96453834-96705736:- chr13:96705409:- GRIK4 ENSG00000149403.13 protein_coding + + chr11:120511746-120988906:+ chr11:120802693:+ chr11:120382455-120859615:+ chr11:120673402:+ chr13:96034983,chr13:96034988 chr11:120669864,chr11:120669859 NA NA chr13:96687237,chr13:96687242 chr11:120540573,chr11:120540568 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Thioredoxin_12-PARTIAL|45-158~|4e-64 ANF_receptor-PARTIAL|~83-383|1.3e-66^Lig_chan-Glu_bd|417-529|2.9e-48^SBP_bac_3|440-528|3.5e-15^Lig_chan|547-816|3.8e-49^SBP_bac_3|686-784|1.3e-07 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr13--chr11] 16 3 16 3 ONLY_REF_SPLICE YES_LDAS 0.1616 GT 1.8295 AG 1.9329 ENST00000376714.7 1-158 ENST00000527524.8 83-2871 chr13|-|[1]96053155-96053312[0]<==>chr11|+|[1]120802693-120802857[0]|[1]120815378-120815475[2]|[0]120819755-120819920[0]|[1]120831852-120832030[2]|[0]120836791-120836844[2]|[0]120861959-120862120[2]|[0]120874066-120874218[2]|[0]120875139-120875243[2]|[0]120898532-120898639[2]|[0]120905290-120905493[2]|[0]120940347-120940460[2]|[0]120952855-120952964[1]|[2]120956780-120956953[1]|[2]120960909-120961074[2]|[0]120962456-120962681[0]|[1]120967195-120967323[0]|[1]120982106-120982224[2]|[0]120985904-120986260[2] atggcgccagcgaaagccacgaacgtggtgcggctgctactaggctccacagcgctgtggctttcgcagctcggctccgggacggtcgccgcgtccaagtcggtgactgcccacttggccgcgaagtggcccgagaccccgctgctgctggaggcaagCTGCTATCTTGGACGACCCCATGGAGTGCAGCAGAGGGGAGCGGCTCTCCATCACCCTGGCCAAGAACCGCATCAACCGCGCTCCTGAGAGGCTGGGCAAGGCCAAGGTCGAAGTGGACATCTTTGAGCTTCTCAGAGACAGCGAGTACGAGACTGCAGAAACCATGTGTCAGATCCTCCCCAAGGGGGTGGTCGCTGTCCTCGGACCATCGTCCAGCCCAGCCTCCAGCTCCATCATCAGCAACATCTGTGGAGAGAAGGAGGTCCCTCACTTCAAAGTGGCCCCAGAGGAGTTCGTCAAGTTCCAGTTCCAGAGATTCACAACCCTGAACCTCCACCCCAGCAACACTGACATCAGCGTGGCTGTAGCTGGGATCCTGAACTTCTTCAACTGCACCACCGCCTGCCTCATCTGTGCCAAAGCAGAATGCCTTTTAAACCTAGAGAAGCTGCTCCGGCAATTCCTTATCTCCAAGGACACGCTGTCCGTCCGCATGCTGGATGACACCCGGGACCCCACCCCGCTCCTCAAGGAGATCCGGGACGACAAGACCGCCACCATCATCATCCACGCCAACGCCTCCATGTCCCACACCATCCTCCTGAAGGCAGCCGAACTTGGGATGGTGTCAGCCTATTACACATACATCTTCACTAATCTGGAGTTCTCACTCCAGAGAATGGACAGCCTTGTGGATGATCGTGTCAACATCCTGGGATTTTCCATTTTCAACCAATCCCATGCTTTCTTCCAAGAGTTTGCCCAGAGCCTCAACCAGTCCTGGCAGGAGAACTGTGACCATGTGCCCTTCACTGGGCCTGCGCTCTCCTCGGCCCTGCTGTTTGATGCTGTCTATGCTGTGGTGACTGCGGTGCAGGAACTGAACCGGAGCCAAGAGATCGGCGTGAAGCCCTTGTCCTGCGGCTCGGCCCAGATCTGGCAGCACGGCACCAGCCTCATGAACTACCTGCGCATGGTAGAATTGGAAGGTCTTACCGGCCACATTGAATTCAACAGCAAAGGCCAGAGGTCCAACTACGCTTTGAAAATCTTACAGTTCACAAGGAATGGTTTTCGGCAGATCGGCCAGTGGCACGTGGCAGAGGGCCTCAGCATGGACAGCCACCTCTATGCCTCCAACATCTCGGACACTCTCTTCAACACCACCCTGGTCGTCACCACCATCCTGGAGAACCCATATTTAATGCTGAAGGGGAACCACCAGGAGATGGAAGGCAATGACCGCTACGAGGGCTTCTGTGTGGACATGCTCAAGGAGCTGGCAGAGATCCTCCGATTCAACTACAAGATCCGCCTGGTTGGGGATGGCGTGTACGGCGTTCCCGAGGCCAACGGCACCTGGACGGGAATGGTCGGGGAGCTGATCGCTAGGAAAGCAGATCTGGCTGTGGCAGGCCTCACCATTACAGCTGAACGGGAGAAGGTGATTGATTTCTCTAAGCCATTCATGACTCTGGGAATTAGCATTCTTTACCGCGTTCATATGGGACGCAAACCCGGCTATTTCTCCTTCCTGGACCCATTTTCTCCGGGCGTCTGGCTCTTCATGCTTCTAGCCTATCTGGCCGTCAGCTGTGTCCTCTTCCTGGTGGCTCGGTTGACGCCCTACGAGTGGTACAGCCCACACCCATGTGCCCAGGGCCGGTGCAACCTCCTGGTGAACCAGTACTCCCTGGGCAACAGCCTCTGGTTTCCGGTCGGGGGGTTCATGCAGCAAGGCTCCACCATCGCCCCTCGCGCCTTATCCACCCGCTGTGTCAGTGGCGTCTGGTGGGCATTCACGCTGATCATCATCTCATCCTACACGGCCAACCTGGCAGCCTTCCTGACCGTGCAGCGCATGGATGTGCCCATTGAGTCAGTGGATGACCTGGCTGACCAGACCGCCATTGAATATGGCACAATTCACGGAGGCTCCAGCATGACCTTCTTCCAAAATTCCCGCTACCAGACCTACCAACGCATGTGGAATTACATGTATTCCAAGCAGCCCAGCGTGTTCGTGAAGAGCACAGAGGAGGGAATCGCCAGGGTGTTGAATTCCAACTACGCCTTCCTCCTGGAATCCACCATGAACGAGTACTATCGGCAGCGAAACTGCAACCTCACTCAGATTGGGGGCCTGCTGGACACCAAGGGCTATGGGATTGGCATGCCAGTCGGCTCGGTTTTCCGGGACGAGTTTGATCTGGCCATTCTCCAGCTGCAGGAGAACAACCGCCTGGAGATCCTGAAGCGCAAATGGTGGGAAGGAGGGAAGTGCCCCAAGGAGGAAGATCACAGAGCTAAAGGCCTGGGAATGGAGAATATTGGTGGAATCTTTGTGGTTCTTATTTGTGGCTTAATCGTGGCCATTTTTATGGCTATGTTGGAGTTTTTATGGACTCTCAGACACTCAGAAGCAACTGAGGTGTCCGTCTGCCAGGAGATGGTGACCGAGCTGCGCAGCATTATCCTGTGTCAGGACAGTATCCACCCCCGCCGGCGGCGCGCCGCAGTCCCGCCGCCCCGGCCCCCCATCCCCGAGGAGCGCCGACCGCGGGGCACGGCGACGCTCAGCAACGGGAAGCTGTGCGGGGCAGGGGAGCCCGACCAGCTCGCGCAGAGACTGGCGCAGGAGGCCGCCCTGGTGGCCCGCGGCTGCACGCACATCCGCGTCTGCCCCGAGTGCCGCCGCTTCCAGGGCCTGCGGGCACGGCCGTCGCCCGCCCGCAGCGAGGAGAGCCTGGAGTGGGAGAAAACCACCAACAGCAGCGAGCCCGAGTAG MAPAKATNVVRLLLGSTALWLSQLGSGTVAASKSVTAHLAAKWPETPLLLEASCYLGRPHGVQQRGAALHHPGQEPHQPRS*EAGQGQGRSGHL*ASQRQRVRDCRNHVSDPPQGGGRCPRTIVQPSLQLHHQQHLWREGGPSLQSGPRGVRQVPVPEIHNPEPPPQQH*HQRGCSWDPELLQLHHRLPHLCQSRMPFKPREAAPAIPYLQGHAVRPHAG*HPGPHPAPQGDPGRQDRHHHHPRQRLHVPHHPPEGSRTWDGVSLLHIHLH*SGVLTPENGQPCG*SCQHPGIFHFQPIPCFLPRVCPEPQPVLAGEL*PCALHWACALLGPAV*CCLCCGDCGAGTEPEPRDRREALVLRLGPDLAARHQPHELPAHGRIGRSYRPH*IQQQRPEVQLRFENLTVHKEWFSADRPVARGRGPQHGQPPLCLQHLGHSLQHHPGRHHHPGEPIFNAEGEPPGDGRQ*PLRGLLCGHAQGAGRDPPIQLQDPPGWGWRVRRSRGQRHLDGNGRGADR*ESRSGCGRPHHYS*TGEGD*FL*AIHDSGN*HSLPRSYGTQTRLFLLPGPIFSGRLALHASSLSGRQLCPLPGGSVDALRVVQPTPMCPGPVQPPGEPVLPGQQPLVSGRGVHAARLHHRPSRLIHPLCQWRLVGIHADHHLILHGQPGSLPDRAAHGCAH*VSG*PG*PDRH*IWHNSRRLQHDLLPKFPLPDLPTHVELHVFQAAQRVREEHRGGNRQGVEFQLRLPPGIHHERVLSAAKLQPHSDWGPAGHQGLWDWHASRLGFPGRV*SGHSPAAGEQPPGDPEAQMVGRREVPQGGRSQS*RPGNGEYWWNLCGSYLWLNRGHFYGYVGVFMDSQTLRSN*GVRLPGDGDRAAQHYPVSGQYPPPPAARRSPAAPAPHPRGAPTAGHGDAQQREAVRGRGARPARAETGAGGRPGGPRLHAHPRLPRVPPLPGPAGTAVARPQRGEPGVGENHQQQRARV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29685 TMEM135::DLG2 ENSG00000166575.17::ENSG00000150672.19 CALU6 SRR8615531 SRR8639196 LUNG carcinoma (undifferentiated_carcinoma) primary star-fusion TRUE TRUE TRUE 761 FALSE NA FALSE NA TMEM135 ENSG00000166575.17 protein_coding + + chr11:87037844-87328824:+ chr11:87157406:+ chr11:86748886-87039866:+ chr11:86868448:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84251291:- chr11:83166055-85339379:- chr11:83962334:- chr11:87160599,chr11:87160596 chr11:84530280,chr11:84530293 NA NA chr11:86871641,chr11:86871638 chr11:84241323,chr11:84241336 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TMEM135_C_rich|9-142|2.1e-76^Tim17|57-110|0.0051^TMEM135_C_rich|280-311|0.44^Tim17|294-341|5.4e-12 PDZ-PARTIAL|~265-296|3.3e-24^PDZ_6-PARTIAL|~265-296|2.3e-09^PDZ_2-PARTIAL|~265-279|2.5e-06^DUF6288-PARTIAL|~265-277|0.097^PDZ_assoc|298-365|9.8e-26^PDZ_assoc|377-388|0.11^PDZ|442-516|3.1e-24^PDZ_2|451-516|4.8e-06^DUF6288|466-509|0.00089^PDZ_6|471-516|7.5e-11^SH3_2|560-619|2.8e-10^SH3_1|562-605|7.1e-11^SH3_9|564-602|4.5e-05^Guanylate_kin|700-876|2.6e-69 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.41Mb] 13 2 13 2 ONLY_REF_SPLICE YES_LDAS 0.1276 GT 1.4566 AG 1.7465 ENST00000305494.6 1-462 ENST00000648622.1 265-2673 chr11|+|[0]87038046-87038186[2]|[0]87067694-87067821[1]|[2]87071523-87071615[1]|[2]87091362-87091395[2]|[0]87157341-87157406[2]<==>chr11|-|[2]83459818-83459924[1]|[0]83462002-83462093[2]|[1]83466708-83466817[0]|[2]83469201-83469373[1]|[0]83471626-83471727[1]|[0]83472727-83472777[1]|[0]83484129-83484228[0]|[2]83532708-83532783[2]|[1]83541682-83541858[2]|[1]83633211-83633325[1]|[0]83786690-83786792[0]|[2]83833614-83833770[2]|[1]83874420-83874488[2]|[1]83930328-83930483[2]|[1]83962885-83963023[1]|[0]83965324-83965468[0]|[2]83980506-83980642[1]|[0]84059315-84059484[2]|[1]84098923-84099047[0]|[2]84163461-84163511[0]|[2]84251238-84251291[0] atggcggccctcagcaagtccatccctcataactgctatgagatcggccacacttggcacccttcctgccgggtctccttcctgcagatcaccgggggcgccctggaggagtccctgaagatctatgctcctctgtacttgattgcagcaattctccggaaacggaaattagactattatttacacaaactactccctgagatcctacaatccgcttcatttctaactgctaatggggccttgtatatggctttcttttgcattttaaggaagatacttggaaaattctactcatggactcctggctttggtgccgctctgccagcatcttatgtggccattctcattgaaagaaaaagcaggagagggctgctcacaatttatatggccaacttggccacagaaacactattcagaatgggtgtagcaagaggaaccatcacaacattaagaaatggagaaGCCAGTCCTGCTCCTATAATTGTCAACACAGATACTTTGGACACAATTCCTTATGTCAATGGGACAGAAATTGAATATGAATTTGAAGAAATTACACTGGAGAGGGGGAATTCTGGCCTGGGATTCAGTATTGCTGGGGGGACAGATAATCCCCACATTGGAGATGACCCTGGCATATTTATTACGAAGATTATACCAGGAGGTGCTGCAGCAGAGGATGGCAGACTCAGGGTCAATGATTGTATCTTGCGGGTGAATGAGGTTGATGTGTCAGAGGTTTCCCACAGTAAAGCGGTGGAAGCCCTGAAGGAAGCAGGGTCTATCGTTCGGCTGTATGTGCGTAGAAGACGACCTATTTTGGAGACCGTTGTGGAAATCAAACTGTTCAAAGGCCCTAAAGGTTTAGGCTTCAGTATTGCAGGAGGTGTGGGGAACCAACACATTCCTGGAGACAACAGCATTTATGTAACTAAAATTATAGATGGAGGAGCTGCACAAAAAGATGGAAGGTTGCAAGTAGGAGATAGACTACTAATGGTAAACAACTACAGTTTAGAAGAAGTAACACACGAAGAGGCAGTAGCAATATTAAAGAACACATCAGAGGTAGTTTATTTAAAAGTTGGCAAACCCACTACCATTTATATGACTGATCCTTATGGTCCACCTGATATTACTCACTCTTATTCTCCACCAATGGAAAACCATCTACTCTCTGGCAACAATGGCACTTTAGAATATAAAACCTCCCTGCCACCCATCTCTCCAGGAAGGTACTCACCAATTCCAAAGCACATGCTTGTTGACGACGACTACACCAGGCCTCCGGAACCTGTTTACAGCACTGTGAACAAACTATGTGATAAGCCTGCTTCTCCCAGGCACTATTCCCCTGTTGAGTGTGACAAAAGCTTCCTCCTCTCAGCTCCCTATTCCCACTACCACCTAGGCCTGCTACCTGACTCTGAGATGACCAGTCATTCCCAACATAGCACCGCAACTCGTCAGCCTTCAATGACTCTCCAACGGGCCGTCTCCCTGGAAGGAGAGCCTCGCAAGGTAGTCCTGCACAAAGGCTCCACTGGCCTGGGCTTCAACATTGTCGGTGGGGAAGATGGAGAAGGTATTTTTGTGTCCTTCATTCTGGCTGGTGGACCAGCAGACCTAAGTGGGGAGCTCCAGAGAGGAGACCAGATCCTATCGGTGAATGGCATTGACCTCCGTGGTGCATCCCACGAGCAGGCAGCTGCTGCACTAAAGGGGGCTGGACAGACAGTGACGATTATAGCACAATATCAACCTGAAGATTACGCTCGATTTGAGGCCAAAATCCATGACCTACGAGAGCAGATGATGAACCACAGCATGAGCTCCGGGTCCGGATCCCTGCGAACCAATCAGAAACGCTCCCTCTACGTCAGAGCCATGTTCGACTACGACAAGAGCAAGGACAGTGGGCTGCCAAGTCAAGGACTTAGTTTTAAATATGGAGATATTCTCCACGTTATCAATGCCTCTGATGATGAGTGGTGGCAAGCCAGGAGAGTCATGCTGGAGGGAGACAGTGAGGAGATGGGGGTCATCCCCAGCAAAAGGAGGGTGGAAAGAAAGGAACGTGCCCGATTGAAGACAGTGAAGTTTAATGCCAAACCTGGAGTGATTGATTCGAAAGGGTCATTCAATGACAAGCGTAAAAAGAGCTTCATCTTTTCACGAAAATTCCCATTCTACAAGAACAAGGAGCAGAGTGAGCAGGAAACCAGTGATCCTGAACGAGGACAAGAAGACCTCATTCTTTCCTATGAGCCTGTTACAAGGCAGGAAATAAACTACACCCGGCCGGTGATTATCCTGGGGCCCATGAAGGATCGGATCAATGACGACTTGATATCTGAATTCCCTGATAAATTTGGCTCCTGTGTGCCTCATACTACGAGGCCAAAGCGAGACTACGAGGTGGATGGCAGAGACTATCACTTTGTCATTTCCAGAGAACAAATGGAGAAAGATATCCAAGAGCACAAGTTTATAGAAGCCGGCCAGTACAATGACAATTTATATGGAACCAGTGTGCAGTCTGTGAGATTTGTAGCAGAAAGAGGCAAACACTGTATACTTGATGTATCAGGAAATGCTATCAAGCGGTTACAAGTTGCCCAGCTCTATCCCATTGCCATCTTCATAAAACCCAGGTCTCTGGAACCTCTTATGGAGATGAATAAGCGTCTAACAGAGGAACAAGCCAAGAAAACCTATGATCGAGCAATTAAGCTAGAACAAGAATTTGGAGAATATTTTACAGCTATTGTCCAAGGAGATACTTTAGAAGATATATATAACCAATGCAAGCTTGTTATTGAAGAGCAATCTGGGCCTTTCATCTGGATTCCCTCAAAGGAAAAGTTATAA MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYYLHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKSRRGLLTIYMANLATETLFRMGVARGTITTLRNGEASPAPIIVNTDTLDTIPYVNGTEIEYEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGSIVRLYVRRRRPILETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIYMTDPYGPPDITHSYSPPMENHLLSGNNGTLEYKTSLPPISPGRYSPIPKHMLVDDDYTRPPEPVYSTVNKLCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATRQPSMTLQRAVSLEGEPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKIHDLREQMMNHSMSSGSGSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDEWWQARRVMLEGDSEEMGVIPSKRRVERKERARLKTVKFNAKPGVIDSKGSFNDKRKKSFIFSRKFPFYKNKEQSEQETSDPERGQEDLILSYEPVTRQEINYTRPVIILGPMKDRINDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYNDNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNKRLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPFIWIPSKEKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29689 EHMT1::COL5A1 ENSG00000181090.21::ENSG00000130635.17 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 762 FALSE NA FALSE NA EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137744090:+ chr9:140513444-140764468:+ chr9:140638542:+ COL5A1 ENSG00000130635.17 protein_coding + + chr9:134641803-134844843:+ chr9:134750542:+ chr9:137533649-137736689:+ chr9:137642388:+ chr9:137749092,chr9:137749093 chr9:134740932,chr9:134740930 NA NA chr9:140643544,chr9:140643545 chr9:137632778,chr9:137632776 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Collagen-PARTIAL|~1495-1509|1.5e-07^Collagen|1516-1571|2.5e-11^COLFI|1608-1836|2.3e-101 ["EHMT1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:2.77Mb] 129 69 129 69 ONLY_REF_SPLICE YES_LDAS 1.6001 GT 1.8256 AG 1.5329 ENST00000629335.2 1-1170 ENST00000371820.4 1495-5517 chr9|+|[0]137619029-137619049[2]|[0]137710967-137711030[0]|[1]137716626-137717182[2]|[0]137728349-137728529[0]|[1]137743371-137743528[2]|[0]137743902-137744090[2]<==>chr9|+|[0]134750542-134750616[2]|[0]134750790-134750882[2]|[0]134752589-134752645[2]|[0]134753850-134753903[2]|[0]134754273-134754326[2]|[0]134756765-134756818[2]|[0]134758243-134758296[2]|[0]134761925-134761978[2]|[0]134763693-134763737[2]|[0]134765681-134765734[2]|[0]134766454-134766498[2]|[0]134767000-134767053[2]|[0]134767310-134767354[2]|[0]134768410-134768463[2]|[0]134772790-134772834[2]|[0]134774859-134774912[2]|[0]134780102-134780146[2]|[0]134782667-134782720[2]|[0]134784989-134785096[2]|[0]134785995-134786048[2]|[0]134789155-134789208[2]|[0]134795082-134795126[2]|[0]134795262-134795315[2]|[0]134796374-134796418[2]|[0]134796848-134796901[2]|[0]134798408-134798461[2]|[0]134801954-134802007[2]|[0]134802888-134802995[2]|[0]134804975-134805064[2]|[0]134805161-134805214[2]|[0]134806189-134806296[2]|[0]134809183-134809290[2]|[0]134810255-134810308[2]|[0]134811339-134811392[2]|[0]134811492-134811599[2]|[0]134812449-134812502[2]|[0]134812605-134812712[2]|[0]134813983-134814036[2]|[0]134814797-134814904[2]|[0]134815576-134815629[2]|[0]134815935-134815988[2]|[0]134817026-134817079[2]|[0]134817778-134817831[2]|[0]134818656-134818763[2]|[0]134818848-134818901[2]|[0]134819000-134819053[2]|[0]134820116-134820223[2]|[0]134822097-134822150[2]|[0]134822998-134823033[2]|[0]134823416-134823469[2]|[0]134824600-134824855[0]|[1]134825792-134825904[2]|[0]134830108-134830176[2]|[0]134834971-134835204[2]|[0]134842157-134842303[2] atggccgccgccgatgccgaggcagttccggcgaggggggagcctcagcaggattgctgtgtgaaaaccgagctgctgggagaagagacacctatggctgccgatgaaggctcagcagagaaacaggcaggagaggcccacatggctgcggacggtgagaccaatgggtcttgtgaaaacagcgatgccagcagtcatgcaaatgctgcaaagcacactcaggacagcgcaagggtcaacccccaggatggcaccaacacactaactcggatagcggaaaatggggtttcagaaagagactcagaagcggcgaagcaaaaccacgtcactgccgacgactttgtgcagacttctgtcatcggcagcaacggatacatcttaaataagccggccctacaggcacagcccttgaggactaccagcactctggcctcttcgctgcctggccatgctgcaaaaacccttcctggaggggctggcaaaggcaggactccaagcgcttttccccagacgccagccgccccaccagccacccttggggaggggagtgctgacacagaggacaggaagctcccggcccctggcgccgacgtcaaggtccacagggcacgcaagaccatgccgaagtccgtcgtgggcctgcatgcagccagtaaagatcccagagaagttcgagaagctagagatcataaggaaccaaaagaggagatcaacaaaaacatttctgactttggacgacagcagcttttaccccccttcccatcccttcatcagtcgctacctcagaaccagtgctacatggccaccacaaaatcacagacagcttgcttgccttttgttttagcagctgcagtatctcggaagaaaaaacgaagaatgggaacctatagcctggttcctaagaaaaagaccaaagtattaaaacagaggacggtgattgagatgtttaagagcataactcattccactgtgggttccaagggggagaaggacctgggcgccagcagcctgcacgtgaatggggagagcctggagatggactcggatgaggacgactcagaggagctcgaggaggacgacggccatggtgcagagcaggcggccgcgttccccacagaggacagcaggacttccaaggagagcatgtcggaggctgatcgcgcccagaagGGCCCCCCTGGACGCCCAGGCCTTCCTGGGGCCGATGGCCTGCCCGGTCCTCCAGGAACCATGCTCATGCTGCCCTTCCGGTTTGGAGGTGGCGGCGATGCGGGCTCCAAAGGCCCCATGGTCTCAGCCCAGGAGTCCCAGGCGCAAGCCATTCTCCAGCAGGCCAGGTTGGCACTGAGGGGACCAGCTGGCCCGATGGGTCTCACAGGGAGACCTGGCCCTGTGGGTCCCCCTGGGAGCGGAGGTTTGAAGGGCGAGCCGGGAGACGTGGGGCCTCAGGGTCCTCGAGGTGTGCAAGGCCCGCCTGGTCCGGCCGGGAAGCCCGGAAGACGGGGTCGGGCTGGGAGTGATGGAGCCAGAGGAATGCCTGGACAAACTGGCCCCAAGGGTGACCGGGGTTTCGACGGCCTGGCTGGGTTGCCAGGCGAGAAGGGCCACAGGGGTGACCCTGGTCCTTCCGGCCCACCAGGACCTCCGGGAGACGATGGAGAAAGGGGTGACGACGGAGAAGTTGGGCCCAGGGGGCTGCCTGGGGAGCCCGGGCCACGTGGTCTGCTTGGGCCGAAGGGGCCCCCAGGTCCTCCCGGACCTCCCGGTGTCACGGGTATGGACGGCCAGCCGGGGCCAAAAGGAAATGTGGGTCCCCAGGGAGAGCCTGGCCCCCCAGGACAGCAGGGTAATCCAGGCGCCCAGGGTCTTCCAGGCCCCCAGGGTGCAATTGGTCCTCCAGGAGAAAAGGGTCCCTTGGGGAAACCAGGCCTTCCAGGAATGCCCGGTGCTGACGGACCCCCGGGACACCCTGGCAAAGAAGGCCCTCCAGGAGAGAAAGGAGGTCAGGGTCCACCTGGCCCCCAGGGTCCGATTGGCTACCCAGGTCCTCGAGGAGTCAAGGGGGCCGATGGCATCCGTGGTCTGAAGGGCACAAAGGGCGAGAAGGGTGAAGACGGCTTTCCTGGGTTTAAAGGAGACATGGGCATCAAGGGTGATCGGGGGGAGATCGGCCCACCCGGTCCCAGGGGAGAAGATGGCCCTGAAGGCCCAAAGGGTCGCGGAGGTCCCAATGGTGACCCCGGTCCTCTGGGACCCCCTGGGGAGAAGGGAAAACTCGGAGTCCCAGGGTTACCAGGGTATCCAGGAAGACAAGGACCAAAGGGCTCTATTGGATTCCCTGGATTTCCTGGCGCCAATGGAGAGAAGGGCGGCAGGGGGACCCCTGGAAAGCCAGGACCGCGGGGGCAGCGAGGCCCAACGGGTCCGAGGGGTGAAAGAGGCCCCCGGGGCATCACTGGGAAGCCTGGCCCCAAGGGCAACTCCGGAGGTGACGGCCCAGCTGGCCCTCCTGGTGAACGGGGACCCAATGGACCCCAAGGACCCACAGGATTTCCTGGACCAAAGGGCCCCCCTGGCCCTCCAGGCAAGGATGGACTCCCAGGACACCCTGGACAGAGAGGCGAGACTGGTTTCCAAGGCAAGACCGGCCCTCCAGGCCCCCCCGGCGTGGTCGGCCCTCAGGGTCCCACGGGAGAAACGGGCCCAATGGGTGAGCGTGGCCACCCTGGGCCCCCTGGACCCCCCGGTGAACAGGGGCTTCCGGGCCTTGCTGGAAAAGAAGGGACGAAGGGTGACCCAGGCCCTGCAGGCCTCCCTGGGAAAGATGGCCCTCCAGGATTACGTGGTTTCCCTGGGGACCGAGGGCTTCCTGGTCCAGTGGGAGCTCTTGGACTGAAAGGCAATGAAGGGCCCCCTGGCCCACCAGGCCCTGCGGGATCTCCAGGGGAGAGAGGTCCAGCTGGAGCCGCTGGGCCCATCGGAATTCCAGGGAGACCTGGGCCCCAGGGACCCCCAGGGCCGGCAGGAGAGAAAGGGGCTCCTGGCGAGAAAGGCCCACAAGGCCCAGCTGGCCGAGACGGTCTCCAGGGGCCTGTGGGGCTCCCGGGTCCAGCTGGCCCTGTGGGTCCCCCTGGAGAAGACGGAGATAAGGGAGAGATCGGGGAGCCGGGGCAGAAAGGAAGCAAGGGGGACAAAGGAGAACAGGGTCCTCCTGGGCCTACAGGTCCTCAAGGCCCCATCGGACAGCCAGGCCCCTCTGGAGCTGACGGCGAGCCGGGGCCTCGGGGCCAGCAGGGCCTTTTCGGGCAGAAAGGTGATGAAGGTCCCAGAGGCTTTCCTGGACCCCCTGGGCCAGTGGGGCTGCAGGGTTTGCCAGGACCTCCAGGCGAGAAGGGTGAGACAGGAGACGTGGGCCAGATGGGCCCCCCGGGTCCCCCTGGCCCCCGAGGACCCTCCGGAGCTCCAGGTGCTGATGGCCCACAAGGTCCCCCAGGTGGAATAGGAAACCCTGGTGCAGTGGGAGAGAAGGGCGAGCCTGGCGAAGCAGGTGAGCCTGGCCTTCCGGGAGAAGGCGGCCCCCCGGGACCCAAAGGAGAAAGGGGAGAGAAGGGCGAGTCAGGCCCTTCAGGTGCTGCCGGACCCCCTGGACCCAAAGGCCCTCCCGGAGATGATGGTCCCAAAGGCAGCCCTGGCCCAGTGGGTTTTCCTGGAGATCCTGGCCCCCCCGGAGAGCCTGGCCCCGCGGGTCAAGATGGTCCCCCTGGTGACAAAGGAGATGATGGTGAACCCGGGCAGACGGGATCCCCCGGCCCTACTGGTGAACCAGGTCCATCGGGGCCTCCAGGAAAAAGGGGTCCCCCAGGCCCCGCAGGCCCCGAAGGCAGACAGGGAGAGAAAGGGGCCAAGGGAGAAGCCGGCTTGGAAGGCCCTCCTGGGAAGACTGGCCCCATCGGCCCCCAGGGGGCCCCTGGGAAGCCCGGACCGGATGGCCTTCGAGGGATCCCTGGCCCTGTGGGAGAACAAGGTCTCCCAGGATCCCCAGGCCCGGACGGTCCCCCCGGCCCCATGGGTCCCCCAGGACTTCCCGGCCTCAAAGGAGATTCTGGTCCCAAAGGTGAAAAGGGTCATCCAGGCCTGATCGGGCTCATCGGTCCTCCGGGTGAACAGGGTGAGAAGGGCGACCGTGGTCTCCCTGGCCCCCAGGGCTCCTCCGGTCCTAAGGGAGAACAGGGTATCACTGGTCCTTCTGGCCCGATTGGGCCTCCTGGGCCCCCTGGCCTGCCGGGTCCGCCTGGTCCAAAAGGTGCTAAGGGCTCCTCGGGTCCAACTGGCCCGAAGGGTGAGGCAGGCCACCCAGGACCCCCAGGCCCCCCGGGCCCCCCGGGAGAGGTCATCCAGCCCCTGCCAATCCAGGCATCCAGGACGCGGCGGAACATCGACGCCAGCCAGCTGCTGGACGACGGGAATGGCGAGAACTACGTGGACTACGCGGACGGCATGGAAGAGATCTTCGGCTCTCTCAACTCTCTGAAGCTGGAGATTGAGCAGATGAAACGGCCCCTGGGCACGCAGCAGAACCCCGCCCGCACCTGCAAGGACCTGCAGCTCTGCCACCCCGACTTCCCAGATGGTGAATACTGGGTCGATCCTAACCAAGGATGCTCCAGGGATTCCTTCAAGGTTTACTGCAACTTCACAGCCGGGGGGTCGACATGCGTCTTCCCTGACAAGAAGTCCGAAGGGAGTAAAATGGCCCGCTGGCCCAAAGAGCAGCCTTCCACCTGGTATAGTCAGTACAAGCGGGGGTCCCTGCTCTCCTATGTGGACGCCGAGGGCAACCCTGTGGGTGTGGTACAGATGACCTTCCTGCGGCTGCTGAGCGCCTCTGCCCACCAGAACGTCACCTACCACTGCTACCAGTCAGTGGCCTGGCAGGACGCAGCCACGGGCAGCTACGACAAGGCCCTCCGCTTCCTGGGCTCCAACGACGAGGAGATGTCCTATGACAACAACCCCTACATCCGCGCCCTGGTGGACGGCTGTGCTACCAAGAAAGGCTACCAGAAGACGGTTCTGGAGATCGACACCCCCAAAGTGGAGCAGGTGCCCATCGTGGACATCATGTTCAATGACTTCGGTGAAGCGTCACAGAAATTTGGATTTGAAGTGGGGCCGGCTTGCTTCATGGGCTAG MAAADAEAVPARGEPQQDCCVKTELLGEETPMAADEGSAEKQAGEAHMAADGETNGSCENSDASSHANAAKHTQDSARVNPQDGTNTLTRIAENGVSERDSEAAKQNHVTADDFVQTSVIGSNGYILNKPALQAQPLRTTSTLASSLPGHAAKTLPGGAGKGRTPSAFPQTPAAPPATLGEGSADTEDRKLPAPGADVKVHRARKTMPKSVVGLHAASKDPREVREARDHKEPKEEINKNISDFGRQQLLPPFPSLHQSLPQNQCYMATTKSQTACLPFVLAAAVSRKKKRRMGTYSLVPKKKTKVLKQRTVIEMFKSITHSTVGSKGEKDLGASSLHVNGESLEMDSDEDDSEELEEDDGHGAEQAAAFPTEDSRTSKESMSEADRAQKGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRNIDASQLLDDGNGENYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGSKMARWPKEQPSTWYSQYKRGSLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVAWQDAATGSYDKALRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFNDFGEASQKFGFEVGPACFMG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29690 CHKA::PPFIA1 ENSG00000110721.12::ENSG00000131626.19 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 763 FALSE NA FALSE NA CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68061953:- chr11:67820326-67888911:- chr11:67829420:- PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70382088:+ chr11:70116796-70231418:+ chr11:70228194:+ chr11:68058383,chr11:68058388 chr11:70381741,chr11:70381736 NA NA chr11:67825850,chr11:67825855 chr11:70227847,chr11:70227842 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Choline_kinase|140-374|7.9e-72^APH|221-350|4e-11^EcKL|227-343|6.2e-09^Kdo|302-335|1.9e-05^Pkinase_fungal|303-334|5.2e-05 none ["CHKA:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:2.15Mb] 69 27 69 27 ONLY_REF_SPLICE YES_LDAS 0.7758 GT 1.8256 AG 1.8892 ENST00000265689.9 1-1314 ENST00000253925.12 3551-3609 chr11|-|[2]68061953-68062034[2]|[1]68064525-68064631[0]|[2]68065786-68065894[2]|[1]68066429-68066516[1]|[0]68068879-68068937[2]|[1]68070189-68070293[2]|[1]68070724-68070857[0]|[2]68074717-68074830[0]|[2]68081404-68081457[0]|[2]68097019-68097130[2]|[1]68120828-68121177[0]<==>chr11|+|[1]70382088-70382146[2] atgaaaaccaaattctgcaccgggggcgaggcggagccctcgccgctcgggctgctgctgagctgcggtagcggcagcgcggccccggcgcccggcgtggggcagcagcgcgacgccgccagcgacctcgagtccaagcagctgggcggccaacagccgccgctcgcgctgccccctccgccgccgctgccgctgccgctgccgctgccccagcccccgccgccgcagccgcccgcagacgagcagccggagccccggacgcggcgcagggcctatctgtggtgcaaggagttcctgcccggcgcctggcggggcctccgcgaggacgagttccacatcagtgtcatcagaggcggccttagcaacatgctgttccagtgctccctacctgacaccacagccacccttggtgatgagcctcggaaagtgctcctgcggctgtatggagcgattttgcagatgaggtcctgtaataaagagggatccgaacaagctcagaaagaaaatgaatttcaaggggctgaggccatggttctggagagcgttatgtttgccattctcgcagagaggtcacttgggccaaaactctatggcatctttccccaaggccgactggagcagttcatcccgagccggcgattagatactgaagaattaagtttgccagatatttctgcagaaatcgccgagaaaatggctacatttcatggtatgaaaatgccattcaataaggaaccaaaatggctttttggcacaatggaaaagtatctaaaggaagtgctgagaattaaatttactgaggaatccagaattaaaaagctccacaaattgctcagttacaatctgcccttggaactggaaaacctgagatcattgcttgaatctactccatctccagttgtattttgtcataatgactgtcaagaaggtaatatcttgttgctggaaggccgagagaattctgaaaaacagaaactgatgctcattgatttcgaatacagcagttacaattacaggggattcgacattggaaatcacttctgtgagtggatgtatgattatagctatgaaaaatacccttttttcagagcaaacatccggaagtatcccaccaagaaacaacagctccattttatttccagttacttgcctgcattccaaaatgactttgaaaacctcagtactgaagaaaaatccattataaaagaagaaatgttgcttgaagttaataggtttgcccttgcatctcatttcctctggggactgtggtccattgtacaagccaagatttcatctattgaatttgggtacatgGCAATGTATCAGGAACACAGAGGTTGGATTCTGCTACAGTCAGGACTTACTCCTGCTAA MKTKFCTGGEAEPSPLGLLLSCGSGSAAPAPGVGQQRDAASDLESKQLGGQQPPLALPPPPPLPLPLPLPQPPPPQPPADEQPEPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGNHFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSIVQAKISSIEFGYMAMYQEHRGWILLQSGLTPA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29692 ST7::PRKAG2 ENSG00000004866.22::ENSG00000106617.16 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 765 FALSE NA FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:116953691:+ chr7:116593292-116870230:+ chr7:116593745:+ PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151675637:- chr7:151253210-151574299:- chr7:151372723:- chr7:117033106,chr7:117033104,chr7:117033117,chr7:117033071,chr7:117033137,chr7:117033065,chr7:117033073,chr7:117033077,chr7:117033080,chr7:117033091,chr7:117033097,chr7:117033085,chr7:117033101,chr7:117042732,chr7:117042733,chr7:117042718,chr7:117042727 chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151688446,chr7:151855085,chr7:151855085,chr7:151855085,chr7:151855085 NA NA chr7:116673160,chr7:116673158,chr7:116673171,chr7:116673125,chr7:116673191,chr7:116673119,chr7:116673127,chr7:116673131,chr7:116673134,chr7:116673145,chr7:116673151,chr7:116673139,chr7:116673155,chr7:116682786,chr7:116682787,chr7:116682772,chr7:116682781 chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151385532,chr7:151552170,chr7:151552170,chr7:151552170,chr7:151552170 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ST7|18-52|3.8e-13 CBS-PARTIAL|~335-364|8.9e-10^Cbl_N3-PARTIAL|~335-342|4.6e-05^CBS|390-437|2.1e-14^CBS|472-510|5.3e-10 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:34.33Mb] 46 15 46 15 ONLY_REF_SPLICE YES_LDAS 0.4929 GT 1.8892 AG 1.3383 ENST00000443979.5 1-151 ENST00000652159.1 335-1578 chr7|+|[0]116953541-116953691[0]<==>chr7|-|[2]151557201-151557232[1]|[0]151560524-151560617[0]|[2]151564078-151564224[0]|[2]151565346-151565383[1]|[0]151565720-151565885[0]|[2]151568716-151568842[2]|[1]151570171-151570225[1]|[0]151572664-151572709[0]|[2]151574891-151574949[1]|[0]151576371-151576452[0]|[2]151595345-151595454[1]|[0]151632069-151632138[0]|[2]151675420-151675637[1] atggctgaagcggccacgggctttctggagcagctcaagtcctgcatagtttggtcttggacgtatctgtggaccgtgtggttcttcatcgtgctattcctggtctacatcctgcgggtgcctttgaaaatcaacgacaacttgagcacagCCTCCGGCCTCTCCTCCTCTCCGTCAACACCCACCCAAGTGACCAAGCAGCACACGTTTCCCCTGGAATCCTATAAGCACGAGCCTGAACGGTTAGAGAATCGCATCTATGCCTCGTCTTCCCCCCCGGACACAGGGCAGAGGTTCTGCCCGTCTTCCTTCCAGAGCCCGACCAGGCCTCCACTGGCATCACCGACACACTATGCTCCCTCCAAAGCCGCGGCGCTGGCGGCGGCCCTGGGACCCGCGGAAGCCGGCATGCTGGAGAAGCTGGAGTTCGAGGACGAAGCAGTAGAAGACTCAGAAAGTGGTGTTTACATGCGATTCATGAGGTCACACAAGTGTTATGACATCGTTCCAACCAGTTCAAAGCTTGTTGTCTTTGATACTACATTACAAGTTAAAAAGGCCTTCTTTGCTTTGGTAGCCAACGGTGTCCGAGCAGCGCCACTGTGGGAGAGTAAAAAACAAAGTTTTGTAGGAATGCTAACAATTACAGATTTCATAAATATACTACATAGATACTATAAATCACCTATGGTACAGATTTATGAATTAGAGGAACATAAAATTGAAACATGGAGGGAGCTTTATTTACAAGAAACATTTAAGCCTTTAGTGAATATATCTCCAGATGCAAGCCTCTTCGATGCTGTATACTCCTTGATCAAAAATAAAATCCACAGATTGCCCGTTATTGACCCTATCAGTGGGAATGCACTTTATATACTTACCCACAAAAGAATCCTCAAGTTCCTCCAGCTTTTTATGTCTGATATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGGATGAGCTTGGAATAGGAACGTACCACAACATTGCCTTCATACATCCAGACACTCCCATCATCAAAGCCTTGAACATATTTGTGGAAAGACGAATATCAGCTCTGCCTGTTGTGGATGAGTCAGGAAAAGTTGTAGATATTTATTCCAAATTTGATGTAATTAATCTTGCTGCTGAGAAAACATACAATAACCTAGATATCACGGTGACCCAGGCCCTTCAGCACCGTTCACAGTATTTTGAAGGTGTTGTGAAGTGCAATAAGCTGGAAATACTGGAGACCATCGTGGACAGAATAGTAAGAGCTGAGGTCCATCGGCTGGTGGTGGTAAATGAAGCAGATAGTATTGTGGGTATTATTTCCCTGTCGGACATTCTGCAAGCCCTGATCCTCACACCAGCAGGTGCCAAACAAAAGGAGACAGAAACGGAGTGA MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLSTASGLSSSPSTPTQVTKQHTFPLESYKHEPERLENRIYASSSPPDTGQRFCPSSFQSPTRPPLASPTHYAPSKAAALAAALGPAEAGMLEKLEFEDEAVEDSESGVYMRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVNISPDASLFDAVYSLIKNKIHRLPVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGIGTYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDITVTQALQHRSQYFEGVVKCNKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALILTPAGAKQKETETE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29698 CPEB3::IDE ENSG00000107864.15::ENSG00000119912.18 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 767 FALSE NA FALSE NA CPEB3 ENSG00000107864.15 protein_coding - - chr10:92046692-92291078:- chr10:92290926:- chr10:93806449-94050835:- chr10:94050683:- IDE ENSG00000119912.18 protein_coding - - chr10:92451684-92574096:- chr10:92454539:- chr10:94211441-94333853:- chr10:94214296:- chr10:92253868,chr10:92253945,chr10:92253870,chr10:92253870 chr10:92455249,chr10:92455194,chr10:92455248,chr10:92455364 NA NA chr10:94013625,chr10:94013702,chr10:94013627,chr10:94013627 chr10:94215006,chr10:94214951,chr10:94215005,chr10:94215121 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.16Mb] 12 2 12 2 ONLY_REF_SPLICE YES_LDAS 0.1132 GT 1.9086 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cytoplasmic polyadenylation element binding protein 3 2 lung cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 29700 PPARD::MKRN6P ENSG00000112033.14::ENSG00000227154.4 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PPARD ENSG00000112033.14 protein_coding + + chr6:35342558-35428191:+ chr6:35347150:+ chr6:35310335-35395968:+ chr6:35314927:+ MKRN6P ENSG00000227154.4 unprocessed_pseudogene + + chr6:35443044-35449847:+ chr6:35449766:+ chr6:35410821-35417624:+ chr6:35417543:+ chr6:35396807,chr6:35396803 chr6:35443585,chr6:35443578 NA NA chr6:35364584,chr6:35364580 chr6:35411362,chr6:35411355 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPARD:Oncogene"] 9 5 9 3.75 ONLY_REF_SPLICE YES_LDAS 0.103 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29701 RPL31P46::ZMAT4 ENSG00000241170.3::ENSG00000165061.15 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 768 FALSE NA FALSE NA RPL31P46 ENSG00000241170.3 transcribed_processed_pseudogene + + chr11:74876286-74920022:+ chr11:74876977:+ chr11:74587331-74631067:+ chr11:74588022:+ ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40532238:- chr8:40388109-40755352:- chr8:40389757:- chr11:74880447,chr11:74880448 chr8:40541471,chr8:40541470 NA NA chr11:74591492,chr11:74591493 chr8:40398990,chr8:40398989 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.105 GT 1.8062 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29702 STX18-AS1::NOD2 ENSG00000247708.8::ENSG00000167207.15 CAMA1 SRR8615532 SRR8639195 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 766 FALSE NA FALSE NA STX18-AS1 ENSG00000247708.8 lncRNA + + chr4:4542131-4787359:+ chr4:4544907:+ chr4:4543858-4789086:+ chr4:4546634:+ NOD2 ENSG00000167207.15 protein_coding + + chr16:50693588-50733077:+ chr16:50731747:+ chr16:50727499-50766988:+ chr16:50765658:+ chr4:4575674,chr4:4575675,chr4:4575674 chr16:50730589,chr16:50730587,chr16:50730587 NA NA chr4:4577401,chr4:4577402,chr4:4577401 chr16:50764500,chr16:50764498,chr16:50764498 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr16] 6 15 6 15 ONLY_REF_SPLICE YES_LDAS 0.1697 GT 1.9086 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29705 GPR180::GPC6 ENSG00000152749.8::ENSG00000183098.12 CALU1 SRR8615533 SRR8639193 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 770 FALSE NA FALSE NA GPR180 ENSG00000152749.8 protein_coding + + chr13:94601857-94634661:+ chr13:94612390:+ chr13:95254111-95286915:+ chr13:95264644:+ GPC6 ENSG00000183098.12 protein_coding + + chr13:93226807-94408020:+ chr13:94286349:+ chr13:93879060-95060274:+ chr13:94938603:+ chr13:94613874 chr13:94285861 NA NA chr13:95266128 chr13:94938115 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MraZ|61-99|9.8e-05^GpcrRhopsn4|143-405|5.1e-83^Lung_7-TM_R|157-379|1e-11^DUF6773|174-247|0.0032^DUF6773|309-387|0.00074 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.19Mb] 18 18 18 18 ONLY_REF_SPLICE YES_LDAS 0.4044 GT 1.8892 AG 1.9656 ENST00000376958.5 1-505 ENST00000377047.9 878-1668 chr13|+|[0]94601928-94602072[0]|[1]94605391-94605549[0]|[1]94612190-94612390[0]<==>chr13|+|[1]94286349-94286479[2]|[0]94305980-94306123[2]|[0]94382414-94382550[1]|[2]94398466-94398641[0]|[1]94403015-94403217[2] atgggggggctgcggctgctggctgtggccctcacgtgctgctggtggccgcagggcagccagggtaagaccctgcggggcagcttcagcagcaccgcggcccaggacgcccagggccagcgcatcggccacttcgagttccatggtgaccatgctcttctgtgtgtcagaatcaacaacatagcagtagctgttggaaaagaagctaaactctacctgttccaagcccaggaatggctaaagctacagcaaagcagtcatggttatagctgtagtgaaaaattatccaaagctcagttgacaatgaccatgaaccagaccgaacataatctgacagtgtcccagattccgtctccacaaacgtggcatgtgttttatgcagacaagtatacatgccaagatgacaaggagaattctcaggtggaagatatcccatttgaaatggtgttactaaacccagatgccgaagggaatccatttgatcattttagtgctggagaatctgATGCAATGCTCTTGGTGGCAGAGCGACTGGAGGGGCCATTCAACATTGAGTCGGTCATGGACCCGATAGATGTCAAGATTTCTGAAGCCATTATGAACATGCAAGAAAACAGCATGCAGGTGTCTGCAAAGGTCTTTCAGGGATGTGGTCAGCCCAAACCTGCTCCAGCCCTCAGATCTGCCCGCTCAGCTCCTGAAAATTTTAATACACGTTTCAGGCCCTACAATCCTGAGGAAAGACCAACAACTGCTGCAGGCACAAGCTTGGACCGGCTGGTCACAGACATAAAAGAGAAATTGAAGCTCTCTAAAAAGGTCTGGTCAGCATTACCCTACACTATCTGCAAGGACGAGAGCGTGACAGCGGGCACGTCCAACGAGGAGGAATGCTGGAACGGGCACAGCAAAGCCAGATACTTGCCTGAGATCATGAATGATGGGCTCACCAACCAGATCAACAATCCCGAGGTGGATGTGGACATCACTCGGCCTGACACTTTCATCAGACAGCAGATTATGGCTCTCCGTGTGATGACCAACAAACTAAAAAACGCCTACAATGGCAATGATGTCAATTTCCAGGACACAAGTGATGAATCCAGTGGCTCAGGGAGTGGCAGTGGGTGCATGGATGACGTGTGTCCCACGGAGTTTGAGTTTGTCACCACAGAGGCCCCCGCAGTGGATCCCGACCGGAGAGAGGTGGACTCTTCTGCAGCCCAGCGTGGCCACTCCCTGCTCTCCTGGTCTCTCACCTGCATTGTCCTGGCACTGCAGAGACTGTGCAGATAA MGGLRLLAVALTCCWWPQGSQGKTLRGSFSSTAAQDAQGQRIGHFEFHGDHALLCVRINNIAVAVGKEAKLYLFQAQEWLKLQQSSHGYSCSEKLSKAQLTMTMNQTEHNLTVSQIPSPQTWHVFYADKYTCQDDKENSQVEDIPFEMVLLNPDAEGNPFDHFSAGESDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPALRSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDESVTAGTSNEEECWNGHSKARYLPEIMNDGLTNQINNPEVDVDITRPDTFIRQQIMALRVMTNKLKNAYNGNDVNFQDTSDESSGSGSGSGCMDDVCPTEFEFVTTEAPAVDPDRREVDSSAAQRGHSLLSWSLTCIVLALQRLCR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match TRUE Skin Cutaneous Melanoma SKIN no_match 95257803 FALSE 95034668 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29715 BAG6::NELFE ENSG00000204463.14::ENSG00000204356.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 773 FALSE NA FALSE NA BAG6 ENSG00000204463.14 protein_coding - - chr6:31639028-31652705:- chr6:31651656:- chr6:31606805-31620482:- chr6:31619433:- NELFE ENSG00000204356.14 protein_coding - - chr6:31952087-31959038:- chr6:31957010:- chr6:31919864-31926815:- chr6:31924787:- chr6:31650570,chr6:31650568,chr6:31650573 chr6:31957351,chr6:31957350,chr6:31957352 NA NA chr6:31618347,chr6:31618345,chr6:31618350 chr6:31925128,chr6:31925127,chr6:31925129 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Rad60-SLD|18-77|1.6e-09^ubiquitin|19-87|4.6e-20^Dsc3_N|36-74|1e-05^TBK1_ULD|36-72|2.2e-05^Ubiquitin_5|36-80|7.5e-05^Rad60-SLD_2|55-90|1.9e-05 RRM_1|269-323|1.2e-14^RRM_occluded|276-327|6.3e-06^Nup35_RRM_2|280-312|1.3e-06 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.30Mb] 405 239 405 239 ONLY_REF_SPLICE YES_LDAS 6.2961 GT 1.8295 AG 1.8892 ENST00000435080.5 1-108 ENST00000375429.8 76-1143 chr6|-|[2]31651656-31651763[0]<==>chr6|-|[2]31952301-31952398[1]|[0]31953729-31953831[0]|[2]31954080-31954134[2]|[1]31954298-31954442[1]|[0]31954555-31954892[2]|[1]31955059-31955096[0]|[2]31955219-31955293[0]|[2]31956693-31956838[1]|[0]31956941-31957010[0] atggagcctaatgatagtaccagtaccgctgtggaggagcctgacagcttggaggtgttggtgaagaccttggactctcaaactcgtacctttattgtgggggcccagAAAAAGGCATTGCTGGCTCTGAAGAAGCAAAGTAGCAGCAGCACAACCAGCCAAGGTGGTGTCAAACGCTCACTATCAGAGCAGCCTGTCATGGACACAGCCACAGCAACAGAGCAGGCAAAGCAGCTGGTGAAGTCAGGAGCCATCAGTGCCATCAAGGCTGAGACCAAGAACTCAGGCTTCAAGCGTTCTCGAACCCTTGAGGGGAAGTTAAAGGACCCCGAGAAGGGACCAGTCCCCACTTTCCAGCCGTTCCAGAGGAGCATATCTGCTGATGATGACCTGCAAGAGTCATCCAGACGTCCCCAGAGGAAATCTCTGTATGAGAGCTTTGTGTCTTCTAGTGATCGACTTCGAGAACTAGGACCAGATGGAGAAGAGGCAGAGGGCCCAGGGGCTGGTGATGGTCCCCCTCGAAGCTTTGACTGGGGCTATGAAGAACGCAGTGGTGCCCACTCCTCAGCCTCCCCTCCCCGAAGCCGCAGCCGGGACCGCAGCCATGAGAGGAACCGGGACAGAGACCGAGATCGGGAGCGGGATCGAGACCGGGATCGAGACAGAGACAGAGAGCGGGACAGGGATCGGGATCGGGATCGAGATCGAGACCGGGAACGGGACAGGGATCGGGAGCGGGATCGAGACCGAGACCGAGAGGGTCCTTTCCGCAGGTCGGATTCATTCCCTGAACGGCGAGCCCCTAGGAAAGGGAATACTCTCTATGTATATGGAGAAGACATGACACCCACCCTTCTCCGTGGGGCCTTCTCTCCTTTTGGAAACATCATTGACCTCTCCATGGACCCACCCAGAAACTGTGCCTTCGTCACCTATGAAAAGATGGAGTCAGCAGATCAGGCCGTTGCTGAGCTCAACGGGACCCAGGTGGAGTCTGTACAGCTCAAAGTCAACATAGCCCGAAAACAGCCCATGCTGGATGCCGCTACTGGCAAGTCTGTCTGGGGCTCCCTCGCTGTCCAGAACAGCCCTAAGGGTTGCCACCGGGACAAGAGGACCCAGATTGTCTACAGTGATGACGTCTACAAGGAAAACCTTGTGGATGGCTTCTAG MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQKKALLALKKQSSSSTTSQGGVKRSLSEQPVMDTATATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPRSFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDREGPFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQIVYSDDVYKENLVDGF* FALSE FALSE NA NA TRUE hsa-mir-1236 chr6:31956839-31956940:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29717 THADA::MTA3 ENSG00000115970.19::ENSG00000057935.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 774 TRUE 1353 TRUE 524 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43595931:- chr2:43457990-43823177:- chr2:43823070:- MTA3 ENSG00000057935.14 protein_coding + + chr2:42494569-42756947:+ chr2:42682401:+ chr2:42721709-42984087:+ chr2:42909541:+ chr2:43592846,chr2:43592852 chr2:42680076,chr2:42680070 NA NA chr2:43819985,chr2:43819991 chr2:42907216,chr2:42907210 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["THADA:Oncogene"];["MTA3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.47Mb] 58 19 58 14.5 ONLY_REF_SPLICE YES_LDAS 0.7088 GT 1.7819 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29718 DBT::VAV3 ENSG00000137992.15::ENSG00000134215.16 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 777 FALSE NA FALSE NA DBT ENSG00000137992.15 protein_coding - - chr1:100186919-100249834:- chr1:100249770:- chr1:100652475-100715390:- chr1:100715326:- VAV3 ENSG00000134215.16 protein_coding - - chr1:107571161-107965180:- chr1:107779492:- chr1:108113783-108507802:- chr1:108322114:- chr1:100248515,chr1:100248519 chr1:107812195,chr1:107812196 NA NA chr1:100714071,chr1:100714075 chr1:108354817,chr1:108354818 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none RhoGEF-PARTIAL|~322-369|1.2e-40^CH|361-388|3.1^DUF2326|383-436|0.0035^PH_10|403-445|0.00012^PH_5|410-439|0.01^PH|413-501|1.1e-12^PH_5|451-498|0.0088^C1_1|514-563|8.6e-14^C1_2|522-555|0.00038^zf-RING_16|524-556|0.00032^Prok-RING_1|526-563|0.00028^zf-RING-like|527-557|0.00042^SH3_2|596-658|4.4e-14^SH3_1|617-652|0.0002^SH3_9|617-655|3.5e-05^SH3_3|618-632|4.2^SH2|672-746|5.9e-20^Filamin|681-715|1.5e-05^DUF2326|713-749|0.023^SH3_1|822-868|3e-16^SH3_9|823-872|7.2e-15^SH3_2|826-873|3.3e-18^SH3_3|837-872|0.0014 ["VAV3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:7.32Mb] 42 0 42 0 ONLY_REF_SPLICE YES_LDAS 0.4106 GT 1.7968 AG 1.6895 ENST00000370132.8 1-51 ENST00000527011.5 322-2628 chr1|-|[2]100249770-100249820[0]<==>chr1|-|[2]107573331-107573372[0]|[2]107574047-107574198[1]|[0]107576392-107576475[1]|[0]107596212-107596341[0]|[2]107602397-107602484[2]|[1]107603047-107603163[2]|[1]107609931-107609965[0]|[2]107617567-107617632[0]|[2]107642619-107642755[1]|[0]107683488-107683533[0]|[2]107688381-107688406[1]|[0]107704550-107704650[2]|[1]107704960-107705061[2]|[1]107748968-107749077[0]|[2]107749462-107749594[2]|[1]107751117-107751202[0]|[2]107755427-107755513[0]|[2]107757261-107757329[0]|[2]107760784-107760879[0]|[2]107765076-107765175[2]|[1]107766447-107766550[0]|[2]107768441-107768509[0]|[2]107770636-107770728[0]|[2]107772735-107772843[2]|[1]107777231-107777296[2]|[1]107779434-107779492[0] atggctgcagtccgtatgctgagaacctggagcaggaatgcggggaagctgGTTATAGAAACATTATCACGACTTTCTCGAACACCTATAGCATTGGCCACAGGAATCAGGCCCTTCCCAACAGAAGAAAGCATTAATGATGAAGACATCTACAAAGGCCTTCCTGATTTAATAGATGAAACCCTTGTGGAAGATGAAGAAGATCTCTATGACTGTGTTTATGGGGAAGATGAAGGTGGAGAAGTCTATGAGGACTTAATGAAGGCAGAGGAAGCACATCAGCCCAAATGTCCAGAAAATGATATACGAAGTTGTTGTCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACTTTGGAGTCAATAGAAAAGTATTTCATGGCACCACTAAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCTGAACTTGTAAAACTTCATCGGAACCTAATGCAAGAGATTCATGATTCCATTGTAAATAAAAATGACCAGAACTTGTACCAAGTTTTTATTAACTACAAGGAAAGATTGGTTATTTACGGGCAGTACTGCAGTGGAGTGGAGTCAGCCATCTCTAGTTTAGACTACATTTCTAAGACAAAAGAAGATGTCAAACTGAAATTAGAGGAATGTTCCAAAAGAGCAAATAATGGGAAATTTACTCTTCGAGACTTGCTTGTGGTTCCTATGCAACGTGTTTTAAAGTACCACCTTCTCCTCCAGGAACTGGTCAAACATACCACTGATCCGACTGAGAAGGCAAATCTGAAACTGGCTCTTGATGCCATGAAGGACTTGGCACAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAGCTATCTATAGAGAATTTGAACCAACCAGTTTTGCTTTTTGGACGACCTCAGGGAGATGGTGAAATTCGAATAACCACTCTAGACAAGCATACCAAACAAGAAAGGCATATCTTCTTATTTGATTTGGCAGTGATCGTATGTAAGAGAAAAGGTGATAACTATGAAATGAAGGAAATAATAGATCTTCAGCAGTACAAGATAGCCAATAATCCTACAACCGATAAAGAAAACAAAAAGTGGTCTTATGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAGAAGAAATGGCTAGAACAGTTTGAAATGGCTTTGTCTAACATAAGACCAGACTATGCAGACTCCAATTTCCACGACTTCAAGATGCATACCTTCACTCGAGTCACATCCTGCAAAGTCTGCCAGATGCTCCTGAGGGGAACATTTTATCAAGGCTATTTATGTTTTAAGTGTGGAGCGAGAGCACACAAAGAATGTTTGGGAAGAGTAGACAATTGTGGCAGAGTTAATTCTGGTGAACAAGGGACACTCAAACTACCAGAGAAACGGACCAATGGACTGCGAAGAACTCCTAAACAGGTGGATCCAGGTTTACCAAAGATGCAGGTCATTAGGAACTATTCTGGAACACCACCCCCAGCTCTGCATGAAGGACCCCCTTTACAGCTCCAGGCCGGGGATACCGTTGAACTTCTGAAAGGAGATGCACACAGTCTGTTTTGGCAGGGCAGAAATTTAGCATCTGGAGAGGTTGGATTTTTTCCAAGTGATGCAGTCAAGCCTTGCCCATGTGTGCCCAAACCAGTAGATTATTCTTGCCAACCCTGGTATGCTGGAGCAATGGAAAGATTGCAAGCAGAGACCGAACTTATTAATAGGGTAAATAGTACTTACCTTGTGAGGCACAGGACCAAAGAGTCAGGAGAATATGCAATTAGCATTAAGTACAATAATGAAGCAAAGCACATCAAGATTTTAACAAGAGATGGCTTTTTTCACATTGCAGAAAATAGAAAATTTAAAAGTTTAATGGAACTTGTGGAGTACTACAAGCATCATTCTCTCAAGGAAGGGTTCAGAACCTTAGATACAACTCTGCAGTTTCCATACAAGGAGCCAGAACATTCAGCTGGACAGAGGGGTAATAGAGCAGGCAACAGCTCCCCCTCTTTGTTCTGTGGCTTTTCTTTTGTAACTCCTCCAGACTACAGCTTTGTTCCCCCTTCTTCCACTCCTTTCTGGTCAGTGTTAAGTCCAAAAGTGCTGGGCATTGCCATCGCTCGGTATGACTTCTGTGCAAGAGATATGAGAGAGTTGTCCTTGTTGAAAGGAGATGTGGTGAAGATTTACACAAAGATGAGTGCAAATGGCTGGTGGAGAGGAGAAGTAAATGGCAGGGTGGGCTGGTTTCCATCCACATATGTGGAAGAGGATGAATAA MAAVRMLRTWSRNAGKLVIETLSRLSRTPIALATGIRPFPTEESINDEDIYKGLPDLIDETLVEDEEDLYDCVYGEDEGGEVYEDLMKAEEAHQPKCPENDIRSCCLAEIKQTEEKYTETLESIEKYFMAPLKRFLTAAEFDSVFINIPELVKLHRNLMQEIHDSIVNKNDQNLYQVFINYKERLVIYGQYCSGVESAISSLDYISKTKEDVKLKLEECSKRANNGKFTLRDLLVVPMQRVLKYHLLLQELVKHTTDPTEKANLKLALDAMKDLAQYVNEVKRDNETLREIKQFQLSIENLNQPVLLFGRPQGDGEIRITTLDKHTKQERHIFLFDLAVIVCKRKGDNYEMKEIIDLQQYKIANNPTTDKENKKWSYGFYLIHTQGQNGLEFYCKTKDLKKKWLEQFEMALSNIRPDYADSNFHDFKMHTFTRVTSCKVCQMLLRGTFYQGYLCFKCGARAHKECLGRVDNCGRVNSGEQGTLKLPEKRTNGLRRTPKQVDPGLPKMQVIRNYSGTPPPALHEGPPLQLQAGDTVELLKGDAHSLFWQGRNLASGEVGFFPSDAVKPCPCVPKPVDYSCQPWYAGAMERLQAETELINRVNSTYLVRHRTKESGEYAISIKYNNEAKHIKILTRDGFFHIAENRKFKSLMELVEYYKHHSLKEGFRTLDTTLQFPYKEPEHSAGQRGNRAGNSSPSLFCGFSFVTPPDYSFVPPSSTPFWSVLSPKVLGIAIARYDFCARDMRELSLLKGDVVKIYTKMSANGWWRGEVNGRVGWFPSTYVEEDE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29722 RALGAPA2::AFF3 ENSG00000188559.16::ENSG00000144218.21 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 776 FALSE NA FALSE NA RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20712375:- chr20:20370174-20693287:- chr20:20693018:- AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99837524:- chr2:100161881-100808890:- chr2:100453986:- chr20:20708276,chr20:20708279 chr2:99850608,chr2:99850608 NA NA chr20:20688919,chr20:20688922 chr2:100467070,chr2:100467070 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none AF-4-PARTIAL|~949-951|0.79^AFF4_CHD|987-1250|1.9e-123^AF4_int|1216-1220|3 ["AFF3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr2] 10 4 10 3.85 ONLY_REF_SPLICE YES_LDAS 0.1354 GT 1.4566 AG 1.7819 ENST00000202677.12 1-106 ENST00000409579.5 949-3756 chr20|-|[0]20712375-20712480[0]<==>chr2|-|[2]99551474-99551595[1]|[0]99554311-99554534[2]|[1]99554683-99554732[0]|[2]99558875-99558968[2]|[1]99560365-99560436[2]|[1]99565487-99565623[0]|[2]99568852-99568915[2]|[1]99578327-99578451[0]|[2]99582798-99582999[2]|[1]99587154-99587278[0]|[2]99593195-99594289[0]|[2]99601435-99601621[2]|[1]99649626-99649666[0]|[2]99672538-99672589[2]|[1]99727077-99727128[1]|[0]99744104-99744140[0]|[2]99752221-99752301[0]|[2]99837477-99837524[0] atgttctcccgaaggagccacggggatgtgaagaagtccacccagaaggtgctggacccgaagaaggacgtgctgacccgcctgaagcacctgcgggcgctgctggGAGAGTAGATCTGGAGAAACCAACAGCTGTGTTGAAGAAATAATCCGGGAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCCATTTCCAAATAAGGACTCTCAGCTTGTATCCTCTGGACACAATAATCCAAAGAAAGGTGATGCAGAGCCAGAGAGTCCAGACAATGGCACATCGAATACATCAATGCTGGAAGATGACCTTAAGCTAAGCAGTGATGAAGAGGAGAATGAACAGCAGGCAGCTCAGAGAACGGCTCTCCGCGCTCTCTCTGACAGCGCCGTGGTCCAGCAGCCCAACTGCAGAACCTCGGTGCCTTCCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCTCCTCCAGCGACTCAGAGAGCAGCTCCGGATCTGACTCGGAGACCGAGAGCAGCTCCAGCGAGAGTGAGGGCAGCAAGCCCCCCCACTTCTCCAGCCCCGAGGCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTGATCCAAAATGAAAGCCACGGGTCAGAGAGCAATCAGTACTACAACCCGGTGAAAGAGGACGTCCAGGACTGTGGGAAAGTCCCCGACGTTTGCCAGCCCAGCCTGAGAGAGAAGGAGATCAAGAGCACTTGCAAGGAGGAGCAAAGGCCAAGGACAGCCAACAAGGCCCCTGGGAGTAAAGGCGTGAAGCAGAAGTCCCCGCCCGCGGCCGTGGCCGTGGCGGTGAGCGCAGCCGCCCCGCCACCCGCAGTGCCCTGTGCGCCCGCGGAGAACGCGCCCGCGCCTGCCCGGAGGTCCGCGGGCAAGAAGCCCACCAGGCGCACCGAGAGGACCTCAGCCGGGGACGGCGCCAACTGCCACCGGCCCGAGGAGCCCGCGGCCGCGGACGCGCTGGGGACGAGCGTGGTGGTCCCCCCGGAGCCCACCAAAACCAGGCCCTGTGGCAACAACAGAGCGAGCCACCGCAAGGAGCTGCGCTCCTCCGTGACCTGCGAGAAGCGCCGCACGCGGGGGCTAAGCAGGATCGTCCCCAAATCCAAGGAGTTCATTGAGACAGAGTCGTCATCTTCATCCTCCTCCTCGGACTCCGACCTGGAGTCCGAGCAGGAGGAGTACCCTCTGTCCAAAGCACAGACCGTGGCTGCCTCTGCCTCCTCCGGGAATGATCAGAGGCTGAAGGAGGCCGCTGCCAACGGGGGCAGTGGTCCTAGGGCCCCTGTAGGCTCCATCAACGCCAGGACCACCAGTGACATCGCCAAGGAGCTGGAGGAGCAGTTCTACACACTGGTCCCCTTTGGCCGGAACGAACTTCTCTCCCCTCTAAAGGACAGTGATGAGATCAGGTCTCTCTGGGTCAAAATCGACCTGACCCTCCTGTCCAGGATCCCAGAACACCTGCCCCAGGAGCCAGGGGTATTGAGCGCCCCTGCCACCAAGGACTCTGAGAGCGCACCGCCCAGCCACACCTCGGACACACCTGCAGAAAAGGCTTTGCCAAAATCCAAGAGGAAACGCAAGTGTGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCACTGCAACATGAACATCAACAGTGTGGCAATACCAATAAATAAAAATGAAAAAATGCTTCGGTCGCCCATCTCACCCCTCTCTGATGCATCTAAACACAAATACACCAGCGAGGACTTAACTTCTTCCAGCCGACCTAATGGCAACAGTTTGTTTACTTCAGCCTCTTCCAGCAAAAAGCCTAAGGCCGACAGCCAGCTGCAGCCTCACGGCGGAGACCTCACGAAAGCAGCTCACAACAATTCTGAAAACATTCCCCTCCACAAGTCACGGCCGCAGACGAAGCCGTGGTCTCCAGGCTCCAACGGCCACAGGGACTGCAAGAGGCAGAAACTTGTCTTCGATGATATGCCTCGCAGTGCCGATTATTTTATGCAAGAAGCTAAACGAATGAAGCATAAAGCAGATGCAATGGTGGAAAAGTTTGGAAAGGCTTTGAACTATGCTGAAGCAGCATTGTCGTTTATCGAGTGTGGAAATGCAATGGAACAAGGCCCCATGGAATCCAAATCTCCTTATACGATGTATTCAGAAACAGTAGAGCTCATCAGGTATGCTATGAGACTAAAAACCCACTCAGGCCCCAATGCCACACCAGAAGACAAACAACTGGCTGCATTATGTTACCGATGCCTGGCCCTCCTGTACTGGCGGATGTTTCGACTCAAAAGGGACCACGCTGTAAAGTATTCAAAAGCACTAATCGACTATTTCAAGAACTCATCTAAAGCCGCCCAAGCCCCATCTCCGTGGGGGGCCAGTGGAAAGAGCACTGGAACCCCATCCCCCATGTCTCCCAACCCCTCTCCCGCCAGCTCCGTGGGGTCTCAGGGCAGCCTCTCCAACGCCAGCGCCCTGTCCCCGTCGACCATCGTCAGCATCCCACAGCGCATCCACCAGATGGCGGCCAACCACGTCAGCATCACCAACAGCATCCTGCACAGCTACGACTACTGGGAGATGGCCGACAACCTGGCCAAGGAAAACCGAGAATTCTTCAACGACCTGGATCTGCTCATGGGGCCGGTCACCCTGCACAGCAGCATGGAGCACCTGGTCCAGTACTCCCAACAGGGCCTGCACTGGCTGCGGAACAGCGCCCACCTGTCATAG MFSRRSHGDVKKSTQKVLDPKKDVLTRLKHLRALLGE*IWRNQQLC*RNNPGDDLASTTFCYSSTWQSGTNQISISK*GLSACILWTQ*SKER*CRARESRQWHIEYINAGR*P*AKQ**RGE*TAGSSENGSPRSL*QRRGPAAQLQNLGAFQQGQQQQQQQRQQQLLQRLREQLRI*LGDREQLQRE*GQQAPPLLQPRG*TGIL*QVAAG*MAKQS*SPQASYSDPK*KPRVREQSVLQPGERGRPGLWESPRRLPAQPEREGDQEHLQGGAKAKDSQQGPWE*RREAEVPARGRGRGGERSRPATRSALCARGERARACPEVRGQEAHQAHREDLSRGRRQLPPARGARGRGRAGDERGGPPGAHQNQALWQQQSEPPQGAALLRDLREAPHAGAKQDRPQIQGVH*DRVVIFILLLGLRPGVRAGGVPSVQSTDRGCLCLLRE*SEAEGGRCQRGQWS*GPCRLHQRQDHQ*HRQGAGGAVLHTGPLWPERTSLPSKGQ**DQVSLGQNRPDPPVQDPRTPAPGARGIERPCHQGL*ERTAQPHLGHTCRKGFAKIQEETQV*QRRRLQGDQEVPGRERQLFKTGHLHQ*YFVCKPLQHEHQQCGNTNK*K*KNASVAHLTPL*CI*TQIHQRGLNFFQPT*WQQFVYFSLFQQKA*GRQPAAASRRRPHESSSQQF*KHSPPQVTAADEAVVSRLQRPQGLQEAETCLR*YASQCRLFYARS*TNEA*SRCNGGKVWKGFELC*SSIVVYRVWKCNGTRPHGIQISLYDVFRNSRAHQVCYETKNPLRPQCHTRRQTTGCIMLPMPGPPVLADVSTQKGPRCKVFKSTNRLFQELI*SRPSPISVGGQWKEHWNPIPHVSQPLSRQLRGVSGQPLQRQRPVPVDHRQHPTAHPPDGGQPRQHHQQHPAQLRLLGDGRQPGQGKPRILQRPGSAHGAGHPAQQHGAPGPVLPTGPALAAEQRPPVI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 29723 THADA::MTA3 ENSG00000115970.19::ENSG00000057935.14 NCIH23 SRR8615538 SRR8652081 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 775 TRUE 1353 TRUE 524 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43595647:- chr2:43457990-43823177:- chr2:43822786:- MTA3 ENSG00000057935.14 protein_coding + + chr2:42494569-42756947:+ chr2:42682401:+ chr2:42721709-42984087:+ chr2:42909541:+ chr2:43592846,chr2:43592852 chr2:42680076,chr2:42680070 NA NA chr2:43819985,chr2:43819991 chr2:42907216,chr2:42907210 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["THADA:Oncogene"];["MTA3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.47Mb] 9 28 9 13.5 ONLY_REF_SPLICE YES_LDAS 0.22 GT 1.8892 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29729 AARS2::PKP3 ENSG00000124608.5::ENSG00000184363.10 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary star-fusion TRUE TRUE TRUE 780 FALSE NA FALSE NA AARS2 ENSG00000124608.5 protein_coding - - chr6:44298731-44313347:- chr6:44310299:- chr6:44266468-44281084:- chr6:44278036:- PKP3 ENSG00000184363.10 protein_coding + + chr11:392614-404908:+ chr11:403078:+ chr11:392614-404908:+ chr11:403078:+ chr6:44309218 chr11:401202 NA NA chr6:44276955 chr11:401202 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame tRNA-synt_2c|42-623|1.1e-175^tRNA_SAD|721-778|4.3e-10^Cas3_C|773-857|2.5e-05^DHHA1-PARTIAL|843-894~|2.1e-08 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr11] 214 121 214 121 ONLY_REF_SPLICE YES_LDAS 4.1527 GT 1.7819 AG 1.2419 ENST00000244571.5 1-894 ENST00000331563.7 1738-2394 chr6|-|[2]44310299-44310443[2]|[1]44310994-44311161[2]|[1]44311390-44311535[0]|[2]44312072-44312263[0]|[2]44313081-44313323[0]<==>chr11|+|[0]403078-403263[2]|[0]403618-403771[0]|[1]403943-404135[1]|[2]404236-404323[2]|[0]404534-404569[2] atggcagcgtcagtggcagctgcagcccggaggctgcggcgggccattcgaaggtcgcccgcatggcggggcctcagccatcggccgctctcatcggagccccctgcagccaaggcctcggccgtgagggccgcctttctgaacttctttcgggaccgccatggccaccggctggtgccctccgcttccgtgcggccccgcggcgaccccagtttgctttttgtcaatgcgggcatgaaccagttcaagccaatctttctgggcaccgtggatccacgaagcgagatggcaggcttccgacgtgtggccaacagccagaaatgtgtgagagctggaggacaccataacgacctggaagatgtgggtcgagacctttcccatcataccttctttgaaatgcttggcaattgggcctttgggggtgaatattttaaggaggaggcttgtaacatggcctgggaactgctgactcaggtctatgggatccctgaggaaaggctctggatctcctactttgatggtgaccccaaggcagggctggacccagacctggagaccagggacatctggctgagcttaggggtgcctgctagccgtgtgctttcctttggaccacaagagaacttctgggagatgggggatactggcccttgtgggccctgtactgagatccactacgaccttgctggtggggtgggagccccccagctggtagagctttggaacctggtcttcatgcaacacaacagagaggcagatggaagcctgcagcccctgccccagcggcatgtggacacaggaatgggcctggaaaggctggtggctgtgctgcaaggcaaacactccacctatgacactgacctcttttccccgctgctcaacgccatacagcagCTGCCCCTCGCCGCCGATGCGCTCACCTTCGCGGAGGTGTCCAAGGACCCCAAGGGCCTCGAGTGGCTGTGGAGCCCCCAGATCGTGGGGCTGTACAACCGGCTGCTGCAGCGCTGCGAGCTCAACCGGCACACGACGGAGGCGGCCGCCGGGGCGCTGCAGAACATCACGGCAGGCGACCGCAGGTGGGCGGGGGTGCTGAGCCGCCTGGCCCTGGAGCAGGAGCGTATTCTGAACCCCCTGCTAGACCGTGTCAGGACCGCCGACCACCACCAGCTGCGCTCACTGACTGGCCTCATCCGAAACCTGTCTCGGAACGCTAGGAACAAGGACGAGATGTCCACGAAGGTGGTGAGCCACCTGATCGAGAAGCTGCCGGGCAGCGTGGGTGAGAAGTCGCCCCCAGCCGAGGTGCTGGTCAACATCATAGCTGTGCTCAACAACCTGGTGGTGGCCAGCCCCATCGCTGCCCGAGACCTGCTGTATTTTGACGGACTCCGAAAGCTCATCTTCATCAAGAAGAAGCGGGACAGCCCCGACAGTGAGAAGTCCTCCCGGGCAGCATCCAGCCTCCTGGCCAACCTGTGGCAGTACAACAAGCTCCACCGTGACTTCCGGGCGAAGGGCTATCGGAAGGAGGACTTCCTGGGCCCATAG MAASVAAAARRLRRAIRRSPAWRGLSHRPLSSEPPAAKASAVRAAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANSQKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEERLWISYFDGDPKAGLDPDLETRDIWLSLGVPASRVLSFGPQENFWEMGDTGPCGPCTEIHYDLAGGVGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVAVLQGKHSTYDTDLFSPLLNAIQQLPLAADALTFAEVSKDPKGLEWLWSPQIVGLYNRLLQRCELNRHTTEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTADHHQLRSLTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEVLVNIIAVLNNLVVASPIAARDLLYFDGLRKLIFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRDFRAKGYRKEDFLGP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29737 CHIC2::KIT ENSG00000109220.11::ENSG00000157404.17 SW1783 SRR8615567 SRR8670711 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_III\, anaplastic) primary star-fusion TRUE TRUE TRUE 781 FALSE NA FALSE NA CHIC2 ENSG00000109220.11 protein_coding - - chr4:54009789-54064605:- chr4:54013837:- chr4:54875956-54930772:- chr4:54880004:- KIT ENSG00000157404.17 protein_coding + + chr4:54657267-54740783:+ chr4:54695512:+ chr4:55523434-55606949:+ chr4:55561678:+ chr4:54012833,chr4:54012835 chr4:54661009,chr4:54661007 NA NA chr4:54879000,chr4:54879002 chr4:55527175,chr4:55527173 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Erf4|45-134|8.3e-15 Ig_3-PARTIAL|~68-98|4.5e-05^Ig_2-PARTIAL|~68-101|6.7e-06^Ig_5-PARTIAL|~68-112|0.0013^Ig_4-PARTIAL|~68-112|0.00045^ig|72-107|0.011^I-set|76-99|0.049^V-set|86-100|1.7^Ig_6|87-98|7.8^Ig_2|133-197|1.5^C2-set_2|175-194|2.2^Ig_3|212-295|1.7e-13^Ig_2|212-307|1.4e-07^ig|217-306|2.2e-19^I-set|222-308|2.6e-11^V-set|224-308|2.1e-06^C2-set_2|224-256|0.98^C1-set|225-293|3.4e-05^Ig_6|245-308|0.00035^Ig_5|259-296|0.01^Ig_4|261-294|0.02^ig|321-403|0.001^Ig_3|322-397|3e-07^I-set|322-400|0.00058^V-set|322-359|0.13^C1-set|348-393|2^Ig_3|424-496|1.2e-07^I-set|426-503|0.00087^C1-set|426-439|5.1^Ig_2|427-506|0.027^V-set|427-447|4.8^C2-set_2|427-494|0.0019^ig|484-506|2.8^PK_Tyr_Ser-Thr|591-923|3.7e-96^Pkinase|592-687|3.1e-13^Ig_4|681-703|6.5^Ig_6|689-720|1.8^Pkinase|762-923|4.3e-34^C2-set_2|925-952|1.4 ["CHIC2:Oncogene"];["KIT:OncocartaV1_panel","KIT:FoundationOne_panel","KIT:OncomapV4_panel","KIT:ArcherDX_panel","KIT:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.59Mb] 9 6 9 6 ONLY_REF_SPLICE YES_LDAS 0.186 GT 1.7465 AG 1.7819 ENST00000263921.8 1-447 ENST00000687109.1 68-2934 chr4|-|[2]54013837-54013896[0]|[2]54014063-54014119[0]|[2]54048955-54049110[0]|[2]54049251-54049305[2]|[1]54064182-54064300[0]<==>chr4|+|[1]54695512-54695781[0]|[1]54698284-54698565[0]|[1]54699630-54699766[2]|[0]54703721-54703892[0]|[1]54707098-54707287[1]|[2]54709424-54709539[0]|[1]54723584-54723698[1]|[2]54725857-54726050[0]|[1]54727218-54727324[2]|[0]54727416-54727542[0]|[1]54727823-54727927[0]|[1]54728011-54728121[0]|[1]54729335-54729485[1]|[2]54731328-54731419[0]|[1]54731871-54731998[2]|[0]54733070-54733192[2]|[0]54736498-54736609[0]|[1]54736721-54736820[1]|[2]54737175-54737280[2]|[0]54738429-54738557[2] atggcggatttcgacgaaatctatgaggaagaggaggacgaggagcgggccctggaggagcagctgctcaagtactcgccggacccggtggtcgtccgcggctccggtcacgtcaccgtatttggactgagcaacaaatttgaatctgaattcccttcttcattaactggaaaagtagctcctgaagaatttaaagccagcatcaacagagttaacagttgtcttaagaagaaccttcctgttaatgtacgttggctactttgtggctgcctttgttgctgctgcacattaggttgcagtatgtggccagttatttgcctcagtaaaagaacacgaagatcgattgagaagttattagaatgggaaaacaataggttataccacaagctgtgcttgcattggagactgagcaaaaggaaatgtgaaacgaataacatgatggaatatGCTCTTCTCAACCATCTGTGAGTCCAGGGGAACCGTCTCCACCATCCATCCATCCAGGAAAATCAGACTTAATAGTCCGCGTGGGCGACGAGATTAGGCTGTTATGCACTGATCCGGGCTTTGTCAAATGGACTTTTGAGATCCTGGATGAAACGAATGAGAATAAGCAGAATGAATGGATCACGGAAAAGGCAGAAGCCACCAACACCGGCAAATACACGTGCACCAACAAACACGGCTTAAGCAATTCCATTTATGTGTTTGTTAGAGATCCTGCCAAGCTTTTCCTTGTTGACCGCTCCTTGTATGGGAAAGAAGACAACGACACGCTGGTCCGCTGTCCTCTCACAGACCCAGAAGTGACCAATTATTCCCTCAAGGGGTGCCAGGGGAAGCCTCTTCCCAAGGACTTGAGGTTTATTCCTGACCCCAAGGCGGGCATCATGATCAAAAGTGTGAAACGCGCCTACCATCGGCTCTGTCTGCATTGTTCTGTGGACCAGGAGGGCAAGTCAGTGCTGTCGGAAAAATTCATCCTGAAAGTGAGGCCAGCCTTCAAAGCTGTGCCTGTTGTGTCTGTGTCCAAAGCAAGCTATCTTCTTAGGGAAGGGGAAGAATTCACAGTGACGTGCACAATAAAAGATGTGTCTAGTTCTGTGTACTCAACGTGGAAAAGAGAAAACAGTCAGCAGACTAAACTACAGGAGAAATATAATAGCTGGCATCACGGTGACTTCAATTATGAACGTCAGGCAACGTTGACTATCAGTTCAGCGAGAGTTAATGATTCTGGAGTGTTCATGTGTTATGCCAATAATACTTTTGGATCAGCAAATGTCACAACAACCTTGGAAGTAGTAGATAAAGGATTCATTAATATCTTCCCCATGATAAACACTACAGTATTTGTAAACGATGGAGAAAATGTAGATTTGATTGTTGAATATGAAGCATTCCCCAAACCTGAACACCAGCAGTGGATCTATATGAACAGAACCTTCACTGATAAATGGGAAGATTATCCCAAGTCTGAGAATGAAAGTAATATCAGATACGTAAGTGAACTTCATCTAACGAGATTAAAAGGCACCGAAGGAGGCACTTACACATTCCTAGTGTCCAATTCTGACGTCAATGCTGCCATAGCATTTAATGTTTATGTGAATACAAAACCAGAAATCCTGACTTACGACAGGCTCGTGAATGGCATGCTCCAATGTGTGGCAGCAGGATTCCCAGAGCCCACAATAGATTGGTATTTTTGTCCAGGAACTGAGCAGAGATGCTCTGCTTCTGTACTGCCAGTGGATGTGCAGACACTAAACTCATCTGGGCCACCGTTTGGAAAGCTAGTGGTTCAGAGTTCTATAGATTCTAGTGCATTCAAGCACAATGGCACGGTTGAATGTAAGGCTTACAACGATGTGGGCAAGACTTCTGCCTATTTTAACTTTGCATTTAAAGGTAACAACAAAGAGCAAATCCATCCCCACACCCTGTTCACTCCTTTGCTGATTGGTTTCGTAATCGTAGCTGGCATGATGTGCATTATTGTGATGATTCTGACCTACAAATATTTACAGAAACCCATGTATGAAGTACAGTGGAAGGTTGTTGAGGAGATAAATGGAAACAATTATGTTTACATAGACCCAACACAACTTCCTTATGATCACAAATGGGAGTTTCCCAGAAACAGGCTGAGTTTTGGGAAAACCCTGGGTGCTGGAGCTTTCGGGAAGGTTGTTGAGGCAACTGCTTATGGCTTAATTAAGTCAGATGCGGCCATGACTGTCGCTGTAAAGATGCTCAAGCCGAGTGCCCATTTGACAGAACGGGAAGCCCTCATGTCTGAACTCAAAGTCCTGAGTTACCTTGGTAATCACATGAATATTGTGAATCTACTTGGAGCCTGCACCATTGGAGGGCCCACCCTGGTCATTACAGAATATTGTTGCTATGGTGATCTTTTGAATTTTTTGAGAAGAAAACGTGATTCATTTATTTGTTCAAAGCAGGAAGATCATGCAGAAGCTGCACTTTATAAGAATCTTCTGCATTCAAAGGAGTCTTCCTGCAGCGATAGTACTAATGAGTACATGGACATGAAACCTGGAGTTTCTTATGTTGTCCCAACCAAGGCCGACAAAAGGAGATCTGTGAGAATAGGCTCATACATAGAAAGAGATGTGACTCCCGCCATCATGGAGGATGACGAGTTGGCCCTAGACTTAGAAGACTTGCTGAGCTTTTCTTACCAGGTGGCAAAGGGCATGGCTTTCCTCGCCTCCAAGAATTGTATTCACAGAGACTTGGCAGCCAGAAATATCCTCCTTACTCATGGTCGGATCACAAAGATTTGTGATTTTGGTCTAGCCAGAGACATCAAGAATGATTCTAATTATGTGGTTAAAGGAAACGCTCGACTACCTGTGAAGTGGATGGCACCTGAAAGCATTTTCAACTGTGTATACACGTTTGAAAGTGACGTCTGGTCCTATGGGATTTTTCTTTGGGAGCTGTTCTCTTTAGGAAGCAGCCCCTATCCTGGAATGCCGGTCGATTCTAAGTTCTACAAGATGATCAAGGAAGGCTTCCGGATGCTCAGCCCTGAACACGCACCTGCTGAAATGTATGACATAATGAAGACTTGCTGGGATGCAGATCCCCTAAAAAGACCAACATTCAAGCAAATTGTTCAGCTAATTGAGAAGCAGATTTCAGAGAGCACCAATCATATTTACTCCAACTTAGCAAACTGCAGCCCCAACCGACAGAAGCCCGTGGTAGACCATTCTGTGCGGATCAATTCTGTCGGCAGCACCGCTTCCTCCTCCCAGCCTCTGCTTGTGCACGACGATGTCTGA MADFDEIYEEEEDEERALEEQLLKYSPDPVVVRGSGHVTVFGLSNKFESEFPSSLTGKVAPEEFKASINRVNSCLKKNLPVNVRWLLCGCLCCCCTLGCSMWPVICLSKRTRRSIEKLLEWENNRLYHKLCLHWRLSKRKCETNNMMEYALLNHL*VQGNRLHHPSIQENQT**SAWATRLGCYALIRALSNGLLRSWMKRMRISRMNGSRKRQKPPTPANTRAPTNTA*AIPFMCLLEILPSFSLLTAPCMGKKTTTRWSAVLSQTQK*PIIPSRGARGSLFPRT*GLFLTPRRAS*SKV*NAPTIGSVCIVLWTRRASQCCRKNSS*K*GQPSKLCLLCLCPKQAIFLGKGKNSQ*RAQ*KMCLVLCTQRGKEKTVSRLNYRRNIIAGITVTSIMNVRQR*LSVQRELMILECSCVMPIILLDQQMSQQPWK**IKDSLISSP**TLQYL*TMEKM*I*LLNMKHSPNLNTSSGSI*TEPSLINGKIIPSLRMKVISDT*VNFI*RD*KAPKEALTHS*CPILTSMLP*HLMFM*IQNQKS*LTTGS*MACSNVWQQDSQSPQ*IGIFVQELSRDALLLYCQWMCRH*THLGHRLES*WFRVL*ILVHSSTMARLNVRLTTMWARLLPILTLHLKVTTKSKSIPTPCSLLC*LVS*S*LA*CALL**F*PTNIYRNPCMKYSGRLLRR*METIMFT*TQHNFLMITNGSFPETG*VLGKPWVLELSGRLLRQLLMA*LSQMRP*LSL*RCSSRVPI*QNGKPSCLNSKS*VTLVIT*IL*IYLEPAPLEGPPWSLQNIVAMVIF*IF*EENVIHLFVQSRKIMQKLHFIRIFCIQRSLPAAIVLMSTWT*NLEFLMLSQPRPTKGDL*E*AHT*KEM*LPPSWRMTSWP*T*KTC*AFLTRWQRAWLSSPPRIVFTETWQPEISSLLMVGSQRFVILV*PETSRMILIMWLKETLDYL*SGWHLKAFSTVYTRLKVTSGPMGFFFGSCSL*EAAPILECRSILSSTR*SRKASGCSALNTHLLKCMT**RLAGMQIP*KDQHSSKLFS*LRSRFQRAPIIFTPT*QTAAPTDRSPW*TILCGSILSAAPLPPPSLCLCTTMS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Mast/stem cell growth factor receptor Kit TK PDGFR P10721 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteine-rich hydrophobic domain 2 2 AML leukaemia_lymphoma fusion translocation TRUE v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog 1 Yes GIST, AML, TGCT, mastocytosis, mucosal melanoma GIST, epithelioma familial gastrointestinal stromal tumour leukaemia_lymphoma, mesenchymal, other, epithelial oncogene missense, other 29741 TMCO3::RBM14 ENSG00000150403.18::ENSG00000239306.5 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 782 FALSE NA FALSE NA TMCO3 ENSG00000150403.18 protein_coding + + chr13:113491021-113554590:+ chr13:113520733:+ chr13:114145336-114208905:+ chr13:114175048:+ RBM14 ENSG00000239306.5 protein_coding + + chr11:66616626-66629934:+ chr11:66626461:+ chr11:66384097-66397405:+ chr11:66393932:+ chr13:113530051 chr11:66624762 NA NA chr13:114184366 chr11:66392233 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF16|98-195|0.0001^Peptidase_S46|99-245|0.0017^Na_H_Exchanger|274-660|7.7e-66^DUF5453|449-517|0.00011^DUF5453|580-599|0.55 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr13--chr11] 29 33 29 33 ONLY_REF_SPLICE YES_LDAS 0.8868 GT 1.9656 AG 1.9329 ENST00000434316.7 1-1343 ENST00000310137.5 1803-2010 chr13|+|[0]113495582-113496025[2]|[0]113498342-113498521[2]|[0]113499958-113500149[2]|[0]113501752-113501880[2]|[0]113503496-113503588[2]|[0]113510238-113510424[0]|[1]113520616-113520733[1]<==>chr11|+|[2]66626461-66626668[2] atgaaggtgttgggaagaagcttcttctgggtgctgtttcccgtccttccctgggcggtgcaggctgtggagcacgaggaggtggcgcagcgtgtgatcaaactgcaccgcgggcgaggggtggctgccatgcagagccggcagtgggtccgggacagctgcaggaagctctcagggcttctccgccagaagaatgcagttctgaacaaactgaaaactgcaattggagcagtggagaaagacgtgggcctgtcggatgaagagaaactgtttcaggtgcacacgtttgaaattttccagaaagagctgaatgaaagtgaaaattccgttttccaagctgtctacggactgcagagagccctgcagggggattacaaagatgtcgtgaacatgaaggagagcagccggcagcgcctggaggccctgagagaggctgcaataaaggaagaaacagaatatatggaacttctggcagcagaaaaacatcaagttgaagcccttaaaaatatgcaacatcaaaaccaaagtttatccatgcttgacgagattcttgaagatgtaagaaaggcagcggatcgtctggaggaagagatagaggaacatgcttttgacgacaataaatcagtcaagggggtcaattttgaggcagttctgagggtggaggaagaagaggccaattctaagcaaaatataacaaaacgagaagtggaggatgacttgggtcttagcatgctgattgactcccagaacaaccagtatattttgaccaagcccagagattcaaccatcccacgtgcagatcaccactttataaaggacattgttaccataggaatgctgtccttgccttgtggctggctatgtacagccataggattgcctacaatgtttggttatattatttgtggtgtacttctgggaccttcaggactaaatagtattaagtctattgtgcaagtggagacattaggagaatttggggtgttttttactctttttcttgttggcttagaattttctccagaaaagctaagaaaggtgtggaagatttccttacaagggccgtgttacatgacactgttaatgattgcatttggcttgctgtgggggcatctcttgcggatcaaacccacgcagagcgtcttcatttccacgtgtctgtccttgtcaagcacacccctcgtgtccaggttcctcatgggcagtgctcggggtgacaaagaaggcgacattgactacagcaccgtgctcctcggcatgctggtgacgcaggacgtgcagctcgggctcttcatggccgtcatgccgactctcatacaggcgggcgccagtgcatcttctagGTATGGTTCCGACCGGCGTTTAGCCGAGCTCTCTGATTACCGCCGTTTATCAGAGTCGCAGCTTTCGTTCCGCCGCTCGCCGACAAAGTCCTCGCTGGATTACCGTCGCCTGCCCGATGCCCATTCCGATTACGCACGCTATTCGGGCTCCTATAATGATTACCTGCGGGCGGCTCAGATGCACTCTGGCTACCAGCGCCGCATGTAG MKVLGRSFFWVLFPVLPWAVQAVEHEEVAQRVIKLHRGRGVAAMQSRQWVRDSCRKLSGLLRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELLAAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGMLVTQDVQLGLFMAVMPTLIQAGASASSRYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLDYRRLPDAHSDYARYSGSYNDYLRAAQMHSGYQRRM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29743 TADA2A::DMD ENSG00000276234.5::ENSG00000198947.18 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 783 FALSE NA FALSE NA TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37444768:+ chr17:35766977-35839830:+ chr17:35804870:+ DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:31323658:- chrX:31115794-33357726:- chrX:31341775:- chr17:37446416 chrX:31342004 NA NA chr17:35806518 chrX:31360121 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Myb_DNA-binding|74-117|8.1e-16^Myb_DNA-bind_6|75-118|4.1e-09^SWIRM|109-121|2.7^Myb_DNA-bind_6|239-253|0.38^Myb_DNA-binding|263-274|0.88^SWIRM|374-440|1.1e-13^RPA_C|402-440|0.00011 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chrX] 15 8 15 7.37 ONLY_REF_SPLICE YES_LDAS 0.32 GT 1.9656 AG 1.8256 ENST00000620628.4 1-604 ENST00000474231.5 1784-3732 chr17|+|[0]37411366-37411390[0]|[1]37423509-37423615[2]|[0]37426950-37427009[2]|[0]37437738-37437829[1]|[2]37440505-37440662[0]|[1]37442564-37442652[2]|[0]37444696-37444768[0]<==>chrX|-|[2]31121833-31121930[1]|[0]31134102-31134194[1]|[0]31146291-31146414[0]|[2]31147275-31147518[2]|[1]31169443-31169601[2]|[1]31172348-31172413[2]|[1]31173539-31173604[2]|[1]31177932-31177970[2]|[1]31178669-31178805[0]|[2]31180370-31180481[2]|[1]31182738-31182904[0]|[2]31203961-31204118[1]|[0]31206582-31206667[2]|[1]31209498-31209699[1]|[0]31223047-31223121[1]|[0]31260955-31261016[2]|[1]31323598-31323658[1] atggaccgtttgggttcctttagcaatgatccctctgataagccaccttgccgaggctgctcctcctacctcatggagccttatatcaagtgtgctgaatgtgggccacctccttttttcctctgcttgcagtgtttcactcgaggctttgagtacaagaaacatcaaagcgatcatacttatgaaataatgacttcagattttcctgtccttgatcccagctggactgctcaagaagaaatggcccttttagaagctgtgatggactgtggctttggaaattggcaggatgtagccaatcaaatgtgcaccaagaccaaggaggagtgtgagaagcactatatgaagcatttcatcaataaccctctgtttgcatctaccctgctgaacctgaaacaagcagaggaagcaaaaactgctgacacagccattccatttcactctacagatgaccctccccgacctacctttgactccttgctttctcgggacatggccgggtacatgccagctcgagcagatttcattgaggaatttgacaattatgcagaatgggacttgagagacattgattttgttgaagatgactcggacattttacatgCGTCTGTCCAGGGTCCCTGGGAGAGAGCCATCTCGCCAAACAAAGTGCCCTACTATATCAACCACGAGACTCAAACAACTTGCTGGGACCATCCCAAAATGACAGAGCTCTACCAGTCTTTAGCTGACCTGAATAATGTCAGATTCTCAGCTTATAGGACTGCCATGAAACTCCGAAGACTGCAGAAGGCCCTTTGCTTGGATCTCTTGAGCCTGTCAGCTGCATGTGATGCCTTGGACCAGCACAACCTCAAGCAAAATGACCAGCCCATGGATATCCTGCAGATTATTAATTGTTTGACCACTATTTATGACCGCCTGGAGCAAGAGCACAACAATTTGGTCAACGTCCCTCTCTGCGTGGATATGTGTCTGAACTGGCTGCTGAATGTTTATGATACGGGACGAACAGGGAGGATCCGTGTCCTGTCTTTTAAAACTGGCATCATTTCCCTGTGTAAAGCACATTTGGAAGACAAGTACAGATACCTTTTCAAGCAAGTGGCAAGTTCAACAGGATTTTGTGACCAGCGCAGGCTGGGCCTCCTTCTGCATGATTCTATCCAAATTCCAAGACAGTTGGGTGAAGTTGCATCCTTTGGGGGCAGTAACATTGAGCCAAGTGTCCGGAGCTGCTTCCAATTTGCTAATAATAAGCCAGAGATCGAAGCGGCCCTCTTCCTAGACTGGATGAGACTGGAACCCCAGTCCATGGTGTGGCTGCCCGTCCTGCACAGAGTGGCTGCTGCAGAAACTGCCAAGCATCAGGCCAAATGTAACATCTGCAAAGAGTGTCCAATCATTGGATTCAGGTACAGGAGTCTAAAGCACTTTAATTATGACATCTGCCAAAGCTGCTTTTTTTCTGGTCGAGTTGCAAAAGGCCATAAAATGCACTATCCCATGGTGGAATATTGCACTCCGACTACATCAGGAGAAGATGTTCGAGACTTTGCCAAGGTACTAAAAAACAAATTTCGAACCAAAAGGTATTTTGCGAAGCATCCCCGAATGGGCTACCTGCCAGTGCAGACTGTCTTAGAGGGGGACAACATGGAAACTCCCGTTACTCTGATCAACTTCTGGCCAGTAGATTCTGCGCCTGCCTCGTCCCCTCAGCTTTCACACGATGATACTCATTCACGCATTGAACATTATGCTAGCAGGCTAGCAGAAATGGAAAACAGCAATGGATCTTATCTAAATGATAGCATCTCTCCTAATGAGAGCATAGATGATGAACATTTGTTAATCCAGCATTACTGCCAAAGTTTGAACCAGGACTCCCCCCTGAGCCAGCCTCGTAGTCCTGCCCAGATCTTGATTTCCTTAGAGAGTGAGGAAAGAGGGGAGCTAGAGAGAATCCTAGCAGATCTTGAGGAAGAAAACAGGAATCTGCAAGCAGAATATGACCGTCTAAAGCAGCAGCACGAACATAAAGGCCTGTCCCCACTGCCGTCCCCTCCTGAAATGATGCCCACCTCTCCCCAGAGTCCCCGGGATGCTGAGCTCATTGCTGAGGCCAAGCTACTGCGTCAACACAAAGGCCGCCTGGAAGCCAGGATGCAAATCCTGGAAGACCACAATAAACAGCTGGAGTCACAGTTACACAGGCTAAGGCAGCTGCTGGAGCAACCCCAGGCAGAGGCCAAAGTGAATGGCACAACGGTGTCCTCTCCTTCTACCTCTCTACAGAGGTCCGACAGCAGTCAGCCTATGCTGCTCCGAGTGGTTGGCAGTCAAACTTCGGACTCCATGGGTGAGGAAGATCTTCTCAGTCCTCCCCAGGACACAAGCACAGGGTTAGAGGAGGTGATGGAGCAACTCAACAACTCCTTCCCTAGTTCAAGAGGACACAATGTAGGAAGTCTTTTCCACATGGCAGATGATTTGGGCAGAGCGATGGAGTCCTTAGTATCAGTCATGACAGATGAAGAAGGAGCAGAATAA MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPTFDSLLSRDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHASVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKMHYPMVEYCTPTTSGEDVRDFAKVLKNKFRTKRYFAKHPRMGYLPVQTVLEGDNMETPVTLINFWPVDSAPASSPQLSHDDTHSRIEHYASRLAEMENSNGSYLNDSISPNESIDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHRLRQLLEQPQAEAKVNGTTVSSPSTSLQRSDSSQPMLLRVVGSQTSDSMGEEDLLSPPQDTSTGLEEVMEQLNNSFPSSRGHNVGSLFHMADDLGRAMESLVSVMTDEEGAE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29744 POLR1HASP::TRIM40 ENSG00000204623.11::ENSG00000204614.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 784 TRUE 1387 TRUE 531 POLR1HASP ENSG00000204623.11 transcribed_unitary_pseudogene - - chr6:29976042-30061640:- chr6:30021667:- chr6:29943819-30029417:- chr6:29989444:- TRIM40 ENSG00000204614.9 protein_coding + + chr6:30136124-30148735:+ chr6:30145994:+ chr6:30103901-30116512:+ chr6:30113771:+ chr6:30010406,chr6:30010411 chr6:30139588,chr6:30139583 NA NA chr6:29978183,chr6:29978188 chr6:30107365,chr6:30107360 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 9 11 7.24 ONLY_REF_SPLICE YES_LDAS 0.2609 GT 1.3996 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29747 ITSN1::C21orf62-AS1 ENSG00000205726.15::ENSG00000205930.11 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 787 TRUE 1389 TRUE 533 ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33642713:+ chr21:35014706-35272165:+ chr21:35015019:+ C21orf62-AS1 ENSG00000205930.11 lncRNA + + chr21:32772100-33019751:+ chr21:32885932:+ chr21:34144411-34392059:+ chr21:34258240:+ chr21:33699882 chr21:32827346 NA NA chr21:35072187 chr21:34199656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr21:0.75Mb] 9 5 9 2.33 ONLY_REF_SPLICE YES_LDAS 0.162 GT 1.7819 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29748 POLR1HASP::TRIM40 ENSG00000204623.11::ENSG00000204614.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 785 TRUE 1387 TRUE 531 POLR1HASP ENSG00000204623.11 transcribed_unitary_pseudogene - - chr6:29976042-30061640:- chr6:30058115:- chr6:29943819-30029417:- chr6:30025892:- TRIM40 ENSG00000204614.9 protein_coding + + chr6:30136124-30148735:+ chr6:30145994:+ chr6:30103901-30116512:+ chr6:30113771:+ chr6:30010406,chr6:30010411 chr6:30139588,chr6:30139583 NA NA chr6:29978183,chr6:29978188 chr6:30107365,chr6:30107360 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 3 8 0.86 ONLY_REF_SPLICE YES_LDAS 0.1267 GT 1.6729 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29749 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21889530,chr9:21889531 chr9:22032059,chr9:22032057 NA NA chr9:21889529,chr9:21889530 chr9:22032058,chr9:22032056 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 8 3 8 2.71 ONLY_REF_SPLICE YES_LDAS 0.1532 GT 1.9086 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29752 TMEM241::NPC1 ENSG00000134490.14::ENSG00000141458.13 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 788 FALSE NA FALSE NA TMEM241 ENSG00000134490.14 protein_coding - - chr18:23197144-23437961:- chr18:23399566:- chr18:20777108-21017925:- chr18:20979530:- NPC1 ENSG00000141458.13 protein_coding - - chr18:23506184-23586506:- chr18:23545149:- chr18:21086148-21166470:- chr18:21125113:- chr18:23396698,chr18:23396703 chr18:23547045,chr18:23547044 NA NA chr18:20976662,chr18:20976667 chr18:21127009,chr18:21127008 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TPT|8-97|3.7e-07^Herpes_UL52|95-119|2.6e-06 Patched-PARTIAL|~836-942|1.6e-34^Sterol-sensing-PARTIAL|~836-938|0.028^MMPL-PARTIAL|~836-947|4^ACR_tran-PARTIAL|~836-941|7.5e-07 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.07Mb];LOCAL_REARRANGEMENT:-:[68223] 7 5 7 4.85 ONLY_REF_SPLICE YES_LDAS 0.1695 GT 1.9899 AG 1.2419 ENST00000473688.5 1-279 ENST00000591051.1 836-2915 chr18|-|[2]23399566-23399647[2]|[1]23421367-23421444[2]|[1]23430631-23430677[0]|[2]23437781-23437852[0]<==>chr18|-|[2]23532202-23532284[1]|[0]23533355-23533517[0]|[2]23534446-23534559[0]|[2]23535469-23535700[2]|[1]23536673-23536876[2]|[1]23538542-23538671[1]|[0]23539355-23539470[2]|[1]23539811-23540001[0]|[2]23540448-23540537[0]|[2]23541068-23541208[0]|[2]23541306-23541433[1]|[0]23543455-23543569[0]|[2]23544344-23544526[0]|[2]23544960-23545149[2] atgtgcgtgaggaggtctctggtcggcctcaccttttgtacctgctacctggcttcttacctcacgaacaagtatgtgctgtctgtcttgaaatttacctaccctacattattccaagggtggcagacgctcattggtggacttttgcttcatgtgtcctggaaactgggctgggtagagatcaacagcagttcaagatctcatgttcttgtgtggcttcctgcttcagtgctgtttgtgggtataatctatgctgggtccagagcattgtccagactgGTTTATTAATTTTGTGAAAAACTACAAGAATCCCAATCTGACCATTTCCTTCACTGCTGAACGAAGTATTGAAGATGAACTAAATCGTGAAAGTGACAGTGATGTCTTCACCGTTGTAATTAGCTATGCCATCATGTTTCTATATATTTCCCTAGCCTTGGGGCACATGAAAAGCTGTCGCAGGCTTCTGGTGGATTCGAAGGTCTCACTAGGCATCGCGGGCATCTTGATCGTGCTGAGCTCGGTGGCTTGCTCCTTGGGTGTCTTCAGCTACATTGGGTTGCCCTTGACCCTCATTGTGATTGAAGTCATCCCGTTCCTGGTGCTGGCTGTTGGAGTGGACAACATCTTCATTCTGGTGCAGGCCTACCAGAGAGATGAACGTCTTCAAGGGGAAACCCTGGATCAGCAGCTGGGCAGGGTCCTAGGAGAAGTGGCTCCCAGTATGTTCCTGTCATCCTTTTCTGAGACTGTAGCATTTTTCTTAGGAGCATTGTCCGTGATGCCAGCCGTGCACACCTTCTCTCTCTTTGCGGGATTGGCAGTCTTCATTGACTTTCTTCTGCAGATTACCTGTTTCGTGAGTCTCTTGGGGTTAGACATTAAACGTCAAGAGAAAAATCGGCTAGACATCTTTTGCTGTGTCAGAGGTGCTGAAGATGGAACAAGCGTCCAGGCCTCAGAGAGCTGTTTGTTTCGCTTCTTCAAAAACTCCTATTCTCCACTTCTGCTAAAGGACTGGATGAGACCAATTGTGATAGCAATATTTGTGGGTGTTCTGTCATTCAGCATCGCAGTCCTGAACAAAGTAGATATTGGATTGGATCAGTCTCTTTCGATGCCAGATGACTCCTACATGGTGGATTATTTCAAATCCATCAGTCAGTACCTGCATGCGGGTCCGCCTGTGTACTTTGTCCTGGAGGAAGGGCACGACTACACTTCTTCCAAGGGGCAGAACATGGTGTGCGGCGGCATGGGCTGCAACAATGATTCCCTGGTGCAGCAGATATTTAACGCGGCGCAGCTGGACAACTATACCCGAATAGGCTTCGCCCCCTCGTCCTGGATCGACGATTATTTCGACTGGGTGAAGCCACAGTCGTCTTGCTGTCGAGTGGACAATATCACTGACCAGTTCTGCAATGCTTCAGTGGTTGACCCTGCCTGCGTTCGCTGCAGGCCTCTGACTCCGGAAGGCAAACAGAGGCCTCAGGGGGGAGACTTCATGAGATTCCTGCCCATGTTCCTTTCGGATAACCCTAACCCCAAGTGTGGCAAAGGGGGACATGCTGCCTATAGTTCTGCAGTTAACATCCTCCTTGGCCATGGCACCAGGGTCGGAGCCACGTACTTCATGACCTACCACACCGTGCTGCAGACCTCTGCTGACTTTATTGACGCTCTGAAGAAAGCCCGACTTATAGCCAGTAATGTCACCGAAACCATGGGCATTAACGGCAGTGCCTACCGAGTATTTCCTTACAGTGTGTTTTATGTCTTCTACGAACAGTACCTGACCATCATTGACGACACTATCTTCAACCTCGGTGTGTCCCTGGGCGCGATATTTCTGGTGACCATGGTCCTCCTGGGCTGTGAGCTCTGGTCTGCAGTCATCATGTGTGCCACCATCGCCATGGTCTTGGTCAACATGTTTGGAGTTATGTGGCTCTGGGGCATCAGTCTGAACGCTGTATCCTTGGTCAACCTGGTGATGAGCTGTGGCATCTCCGTGGAGTTCTGCAGCCACATAACCAGAGCGTTCACGGTGAGCATGAAAGGCAGCCGCGTGGAGCGCGCGGAAGAGGCACTTGCCCACATGGGCAGCTCCGTGTTCAGTGGAATCACACTTACAAAATTTGGAGGGATTGTGGTGTTGGCTTTTGCCAAATCTCAAATTTTCCAGATATTCTACTTCAGGATGTATTTGGCCATGGTCTTACTGGGAGCCACTCACGGATTAATATTTCTCCCTGTCTTACTCAGTTACATAGGGCCATCAGTAAATAAAGCCAAAAGTTGTGCCACTGAAGAGCGATACAAAGGAACAGAGCGCGAACGGCTTCTAAATTTCTAG MCVRRSLVGLTFCTCYLASYLTNKYVLSVLKFTYPTLFQGWQTLIGGLLLHVSWKLGWVEINSSSRSHVLVWLPASVLFVGIIYAGSRALSRLVY*FCEKLQESQSDHFLHC*TKY*R*TKS*K*Q*CLHRCN*LCHHVSIYFPSLGAHEKLSQASGGFEGLTRHRGHLDRAELGGLLLGCLQLHWVALDPHCD*SHPVPGAGCWSGQHLHSGAGLPER*TSSRGNPGSAAGQGPRRSGSQYVPVILF*DCSIFLRSIVRDASRAHLLSLCGIGSLH*LSSADYLFRESLGVRH*TSREKSARHLLLCQRC*RWNKRPGLRELFVSLLQKLLFSTSAKGLDETNCDSNICGCSVIQHRSPEQSRYWIGSVSFDAR*LLHGGLFQIHQSVPACGSACVLCPGGRARLHFFQGAEHGVRRHGLQQ*FPGAADI*RGAAGQLYPNRLRPLVLDRRLFRLGEATVVLLSSGQYH*PVLQCFSG*PCLRSLQASDSGRQTEASGGRLHEIPAHVPFG*P*PQVWQRGTCCL*FCS*HPPWPWHQGRSHVLHDLPHRAADLC*LY*RSEESPTYSQ*CHRNHGH*RQCLPSISLQCVLCLLRTVPDHH*RHYLQPRCVPGRDISGDHGPPGL*ALVCSHHVCHHRHGLGQHVWSYVALGHQSERCILGQPGDELWHLRGVLQPHNQSVHGEHERQPRGARGRGTCPHGQLRVQWNHTYKIWRDCGVGFCQISNFPDILLQDVFGHGLTGSHSRINISPCLTQLHRAISK*SQKLCH*RAIQRNRARTASKFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29753 ITSN1::C21orf62-AS1 ENSG00000205726.15::ENSG00000205930.11 SW1990 SRR8615568 SRR8670712 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 786 TRUE 1389 TRUE 533 ITSN1 ENSG00000205726.15 protein_coding + + chr21:33642400-33899861:+ chr21:33642713:+ chr21:35014706-35272165:+ chr21:35015019:+ C21orf62-AS1 ENSG00000205930.11 lncRNA + + chr21:32772100-33019751:+ chr21:32884104:+ chr21:34144411-34392059:+ chr21:34256412:+ chr21:33699882 chr21:32827346 NA NA chr21:35072187 chr21:34199656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr21:0.75Mb] 7 8 7 5.59 ONLY_REF_SPLICE YES_LDAS 0.1801 GT 1.7819 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29766 MECP2::TMLHE ENSG00000169057.25::ENSG00000185973.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 790 TRUE 1405 TRUE 538 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154092184:- chrX:153287024-153402578:- chrX:153357642:- TMLHE ENSG00000185973.12 protein_coding - - chrX:155489011-155719098:- chrX:155524632:- chrX:154718672-154948759:- chrX:154754293:- chrX:154073662,chrX:154073667 chrX:155541373,chrX:155541375 NA NA chrX:153339113,chrX:153339118 chrX:154771034,chrX:154771036 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2970|2-22|9.2e-06 TauD-PARTIAL|~182-404|3.5e-42^CsiD|233-252|0.14^DUF6422|239-268|0.00013^CsiD|364-400|1.2e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:1.35Mb] 102 98 102 93.4 ONLY_REF_SPLICE YES_LDAS 3.0883 GT 1.8892 AG 1.8892 ENST00000630151.2 1-26 ENST00000334398.8 182-1266 chrX|-|[1]154092184-154092209[0]<==>chrX|-|[2]155491535-155491666[0]|[2]155492357-155492495[2]|[1]155506898-155507134[2]|[1]155511673-155511792[2]|[1]155513986-155514265[1]|[0]155524456-155524632[1] atggtagctgggatgttagggctcagAGCTGAAATATGCTAATACCGTGATGCGCTTTGATTACGTCTGGCTTCGAGACCACTGCCGCTCAGCATCGTGCTACAACTCTAAGACTCACCAGCGCAGCCTGGATACTGCCAGTGTGGATTTATGTATCAAGCCAAAGACCATTCGTCTGGATGAGACCACACTCTTTTTCACTTGGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGGCAGAAACAAAAAGTCATCCAGCCTAGAATACTATGGAATGCTGAAATCTACCAGCAAGCCCAAGTTCCATCGGTAGATTGCCAGAGCTTCTTAGAAACCAACGAGGGACTGAAGAAGTTTCTGCAAAACTTTCTGCTCTATGGAATTGCATTCGTAGAAAATGTCCCTCCCACTCAAGAGCACACAGAGAAGTTGGCAGAAAGGATCAGCTTAATCAGAGAAACCATTTATGGGAGGATGTGGTATTTCACTTCAGACTTCTCCAGAGGTGACACTGCGTACACCAAGCTAGCTCTGGATCGGCACACTGACACTACCTATTTTCAAGAGCCCTGTGGCATTCAAGTGTTTCATTGTCTTAAACATGAAGGAACTGGTGGCAGGACACTGCTAGTAGATGGATTCTATGCAGCAGAACAGGTACTTCAAAAGGCACCTGAGGAATTTGAACTCCTCAGTAAAGTGCCATTGAAGCATGAATATATTGAAGATGTTGGAGAATGTCACAACCACATGATTGGGATTGGGCCAGTCTTAAATATCTACCCATGGAATAAAGAGCTGTATTTGATCAGGTACAACAACTATGACCGGGCTGTCATCAATACCGTTCCTTATGATGTCGTCCATCGCTGGTATACAGCACACCGGACTCTAACGATAGAGTTGAGGAGACCTGAGAATGAGTTTTGGGTCAAACTAAAGCCTGGCAGGGTCCTATTTATAGACAACTGGCGTGTCCTACATGGCAGGGAATGCTTCACTGGCTACCGCCAACTGTGTGGCTGCTATTTAACAAGAGATGATGTATTAAACACTGCTCGCCTCTTGGGGCTTCAGGCTTAA MVAGMLGLRAEIC*YRDAL*LRLASRPLPLSIVLQL*DSPAQPGYCQCGFMYQAKDHSSG*DHTLFHLARWSCD*I*FELAGEKQL*RAETKSHPA*NTMEC*NLPASPSSIGRLPELLRNQRGTEEVSAKLSALWNCIRRKCPSHSRAHREVGRKDQLNQRNHLWEDVVFHFRLLQR*HCVHQASSGSAH*HYLFSRALWHSSVSLS*T*RNWWQDTASRWILCSRTGTSKGT*GI*TPQ*SAIEA*IY*RCWRMSQPHDWDWASLKYLPME*RAVFDQVQQL*PGCHQYRSL*CRPSLVYSTPDSNDRVEET*E*VLGQTKAWQGPIYRQLACPTWQGMLHWLPPTVWLLFNKR*CIKHCSPLGASGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29767 MECP2::TMLHE ENSG00000169057.25::ENSG00000185973.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 791 TRUE 1405 TRUE 538 MECP2 ENSG00000169057.25 protein_coding - - chrX:154021573-154137103:- chrX:154097604:- chrX:153287024-153402578:- chrX:153363061:- TMLHE ENSG00000185973.12 protein_coding - - chrX:155489011-155719098:- chrX:155524632:- chrX:154718672-154948759:- chrX:154754293:- chrX:154073662,chrX:154073667 chrX:155541373,chrX:155541375 NA NA chrX:153339113,chrX:153339118 chrX:154771034,chrX:154771036 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Clr2_transil|37-52|1.3 TauD-PARTIAL|~182-404|3.5e-42^CsiD|233-252|0.14^DUF6422|239-268|0.00013^CsiD|364-400|1.2e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:1.35Mb] 91 14 91 4.6 ONLY_REF_SPLICE YES_LDAS 1.5109 GT 1.6895 AG 1.8892 ENST00000407218.5 1-62 ENST00000334398.8 182-1266 chrX|-|[1]154097604-154097665[0]<==>chrX|-|[2]155491535-155491666[0]|[2]155492357-155492495[2]|[1]155506898-155507134[2]|[1]155511673-155511792[2]|[1]155513986-155514265[1]|[0]155524456-155524632[1] atggccgccgccgccgccgccgcgccgagcggaggaggaggaggaggcgaggaggagagactAGCTGAAATATGCTAATACCGTGATGCGCTTTGATTACGTCTGGCTTCGAGACCACTGCCGCTCAGCATCGTGCTACAACTCTAAGACTCACCAGCGCAGCCTGGATACTGCCAGTGTGGATTTATGTATCAAGCCAAAGACCATTCGTCTGGATGAGACCACACTCTTTTTCACTTGGCCAGATGGTCATGTGACTAAATATGATTTGAATTGGCTGGTGAAAAACAGCTATGAAGGGCAGAAACAAAAAGTCATCCAGCCTAGAATACTATGGAATGCTGAAATCTACCAGCAAGCCCAAGTTCCATCGGTAGATTGCCAGAGCTTCTTAGAAACCAACGAGGGACTGAAGAAGTTTCTGCAAAACTTTCTGCTCTATGGAATTGCATTCGTAGAAAATGTCCCTCCCACTCAAGAGCACACAGAGAAGTTGGCAGAAAGGATCAGCTTAATCAGAGAAACCATTTATGGGAGGATGTGGTATTTCACTTCAGACTTCTCCAGAGGTGACACTGCGTACACCAAGCTAGCTCTGGATCGGCACACTGACACTACCTATTTTCAAGAGCCCTGTGGCATTCAAGTGTTTCATTGTCTTAAACATGAAGGAACTGGTGGCAGGACACTGCTAGTAGATGGATTCTATGCAGCAGAACAGGTACTTCAAAAGGCACCTGAGGAATTTGAACTCCTCAGTAAAGTGCCATTGAAGCATGAATATATTGAAGATGTTGGAGAATGTCACAACCACATGATTGGGATTGGGCCAGTCTTAAATATCTACCCATGGAATAAAGAGCTGTATTTGATCAGGTACAACAACTATGACCGGGCTGTCATCAATACCGTTCCTTATGATGTCGTCCATCGCTGGTATACAGCACACCGGACTCTAACGATAGAGTTGAGGAGACCTGAGAATGAGTTTTGGGTCAAACTAAAGCCTGGCAGGGTCCTATTTATAGACAACTGGCGTGTCCTACATGGCAGGGAATGCTTCACTGGCTACCGCCAACTGTGTGGCTGCTATTTAACAAGAGATGATGTATTAAACACTGCTCGCCTCTTGGGGCTTCAGGCTTAA MAAAAAAAPSGGGGGGEEERLAEIC*YRDAL*LRLASRPLPLSIVLQL*DSPAQPGYCQCGFMYQAKDHSSG*DHTLFHLARWSCD*I*FELAGEKQL*RAETKSHPA*NTMEC*NLPASPSSIGRLPELLRNQRGTEEVSAKLSALWNCIRRKCPSHSRAHREVGRKDQLNQRNHLWEDVVFHFRLLQR*HCVHQASSGSAH*HYLFSRALWHSSVSLS*T*RNWWQDTASRWILCSRTGTSKGT*GI*TPQ*SAIEA*IY*RCWRMSQPHDWDWASLKYLPME*RAVFDQVQQL*PGCHQYRSL*CRPSLVYSTPDSNDRVEET*E*VLGQTKAWQGPIYRQLACPTWQGMLHWLPPTVWLLFNKR*CIKHCSPLGASGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29769 PITRM1::ENSG00000288566 ENSG00000107959.17::ENSG00000288566.1 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PITRM1 ENSG00000107959.17 protein_coding - - chr10:3137728-3172841:- chr10:3170104:- chr10:3179920-3215033:- chr10:3212296:- ENSG00000288566 ENSG00000288566.1 lncRNA - - chr10:3200829-3210666:- chr10:3201367:- chr10:3243021-3252858:- chr10:3243559:- chr10:3167425,chr10:3167434 chr10:3207043,chr10:3207049 NA NA chr10:3209617,chr10:3209626 chr10:3249235,chr10:3249241 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 28 22 28 22 ONLY_REF_SPLICE YES_LDAS 0.7902 GT 1.9086 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29770 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 793 TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71728623:- chr3:71724565-71803924:- chr3:71777774:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FOXP1:ArcherDX_panel","FOXP1:FoundationOne_panel","FOXP1:Oncogene"];["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.09Mb];LOCAL_REARRANGEMENT:-:[91427] 28 28 28 23.51 ONLY_REF_SPLICE YES_LDAS 0.8141 GT 1.5329 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 FALSE|TRUE,TRUE|FALSE,TRUE|FALSE,TRUE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29773 TCF12::NKAIN2 ENSG00000140262.18::ENSG00000188580.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 795 FALSE NA FALSE NA TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:57166466:+ chr15:57210821-57591479:+ chr15:57458664:+ NKAIN2 ENSG00000188580.16 protein_coding + + chr6:123803865-124825640:+ chr6:124818387:+ chr6:124125010-125146786:+ chr6:125139533:+ chr15:57184917,chr15:57184600,chr15:57184598,chr15:57184641,chr15:57184644,chr15:57184643,chr15:57184674,chr15:57184681 chr6:124796184,chr6:124796225,chr6:124796220,chr6:124796565,chr6:124796565,chr6:124796565,chr6:124796949,chr6:124796949 NA NA chr15:57477115,chr15:57476798,chr15:57476796,chr15:57476839,chr15:57476842,chr15:57476841,chr15:57476872,chr15:57476879 chr6:125117330,chr6:125117371,chr6:125117366,chr6:125117711,chr6:125117711,chr6:125117711,chr6:125118095,chr6:125118095 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["TCF12:Oncogene"];["NKAIN2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr6] 18 14 18 14 ONLY_REF_SPLICE YES_LDAS 0.5058 GT 1.9899 AG 1.7465 ENST00000557843.5 1-390 ENST00000368417.6 536-627 chr15|+|[0]56919914-56919988[2]|[0]56921026-56921098[0]|[1]57063750-57063823[2]|[0]57091789-57091891[0]|[1]57166402-57166466[2]<==>chr6|+|[1]124818387-124818468[1]|[2]124823220-124823229[2] atgaatccccagcaacaacgcatggccgctatagggaccgacaaggagctgagcgacctactggacttcagtgcgatgttttccccacctgttaatagtgggaaaactagaccaactacactgggaagcagtcaattcagtggatcaggtattgatgaaagaggaggtacaacatcttggggaacaagtggtcaaccaagtccttcctatgattcatctagaggttttacagacagccctcattacagtgatcacttgaatgacagtcgattaggagcccatgaaggcttgtccccaacacctttcatgaactcaaatctgatgggaaaaacatcagagagaggctcattttccctgtacagcagagatactggattaccaggctgtcaaTTGATTTCATAGGTGGCTTTGACTCTTATGGCTATCAAGGGCCTCAGAAGACATCTCATTTACAACTACAGCCTATGTACATGTCAAAATAA MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSWGTSGQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLYSRDTGLPGCQLIS*VALTLMAIKGLRRHLIYNYSLCTCQN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29775 FOXP1::EIF4E3 ENSG00000114861.24::ENSG00000163412.13 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 794 TRUE 1408 TRUE 539 FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71581549:- chr3:71003844-71633129:- chr3:71630700:- EIF4E3 ENSG00000163412.13 protein_coding - - chr3:71675414-71754773:- chr3:71710484:- chr3:71724565-71803924:- chr3:71759635:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FOXP1:ArcherDX_panel","FOXP1:FoundationOne_panel","FOXP1:Oncogene"];["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.09Mb];LOCAL_REARRANGEMENT:-:[91427] 15 16 15 4.35 ONLY_REF_SPLICE YES_LDAS 0.3059 GT 1.5329 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,HEAD_AND_NECK,BREAST exact 71542577|71542577,71542577|71542577,71542577|71542577,71542577,71630700|71630700 FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE 71759635|71777774,71777774|71759635,71777774|71759635,71777774,71759635|71748859 TRUE|FALSE,FALSE|TRUE,FALSE|TRUE,FALSE,TRUE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-5UTR,5UTR-5UTR,5UTR-5UTR,5UTR-CDS FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29776 SPG11::SORD2P ENSG00000104133.16::ENSG00000259479.7 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SPG11 ENSG00000104133.16 protein_coding - - chr15:44554818-44663688:- chr15:44633505:- chr15:44847016-44955886:- chr15:44925703:- SORD2P ENSG00000259479.7 transcribed_unprocessed_pseudogene - - chr15:44827060-44861850:- chr15:44850387:- chr15:45119258-45154048:- chr15:45142585:- chr15:44631741,chr15:44631746 chr15:44852488,chr15:44852490 NA NA chr15:44923939,chr15:44923944 chr15:45144686,chr15:45144688 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.16Mb] 14 12 14 11.87 ONLY_REF_SPLICE YES_LDAS 0.4089 GT 1.2867 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29777 EMB::SLC8A1-AS1 ENSG00000170571.12::ENSG00000227028.6 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EMB ENSG00000170571.12 protein_coding - - chr5:50396192-50443248:- chr5:50402286:- chr5:49692026-49739082:- chr5:49698120:- SLC8A1-AS1 ENSG00000227028.6 lncRNA + + chr2:39786453-40255209:+ chr2:40251684:+ chr2:40013593-40482349:+ chr2:40478824:+ chr5:50401982,chr5:50401985 chr2:40148083,chr2:40148080 NA NA chr5:49697816,chr5:49697819 chr2:40375223,chr2:40375220 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr5--chr2] 12 8 12 7.68 ONLY_REF_SPLICE YES_LDAS 0.3111 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29778 MYO15B::MAP3K3 ENSG00000266714.11::ENSG00000198909.8 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MYO15B ENSG00000266714.11 protein_coding + + chr17:75587800-75626849:+ chr17:75596555:+ chr17:73583881-73622929:+ chr17:73592636:+ MAP3K3 ENSG00000198909.8 protein_coding + + chr17:63622415-63696305:+ chr17:63685517:+ chr17:61699775-61773665:+ chr17:61762877:+ chr17:75596891,chr17:75596891,chr17:75596888 chr17:63683116,chr17:63683117,chr17:63683110 NA NA chr17:73592972,chr17:73592972,chr17:73592969 chr17:61760476,chr17:61760477,chr17:61760470 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Myosin_head|723-1381|2.4e-154^IQ|1421-1434|0.001^MyTH4|1598-1699|9.7e-22^FERM_M|1935-1971|7^SH3_2|2485-2539|8.1e-13^SH3_9|2488-2538|5.8e-10^SH3_9|2549-2567|0.35^MyTH4|2695-2787|2.6e-31^SNX17-27-31_F1_FERM|2799-2854|1e-05^FERM_M|2880-2993|5.6e-22^MyTH4|2934-2965|4.8 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:11.89Mb] 12 13 12 13 ONLY_REF_SPLICE YES_LDAS 0.3952 GT 1.7465 AG 1.9329 ENST00000645453.3 1-3393 ENST00000579585.5 730-1974 chr17|+|[0]75588058-75590243[1]|[2]75590626-75590689[2]|[0]75590907-75591016[1]|[2]75591172-75591246[1]|[2]75591601-75591712[2]|[0]75591977-75592080[1]|[2]75592238-75592301[2]|[0]75592428-75592541[2]|[0]75592679-75592840[2]|[0]75594475-75594588[2]|[0]75594701-75594759[1]|[2]75594840-75594972[2]|[0]75596460-75596555[2]<==>chr17|+|[0]63685517-63685590[1]|[2]63688527-63688594[0]|[1]63688789-63688881[0]|[1]63689544-63689735[0]|[1]63690264-63690412[2]|[0]63691102-63691233[2]|[0]63691733-63691862[0]|[1]63692242-63692419[1]|[2]63693549-63693777[2] atgggcaggaaccagcgcaaagcgccccagcgcctggagaggcccgggaggccggcctcaggggagcaggagtcggggtcggccagcgcggatggcgcgcccagccgggaacgccgttccgaccgcgggcaggcggacagggcgaaaccggcggccgagcctgccaccgccgggggccagggaacccctggtggccgcaggaagcccactgcagaggggaacggcggctgcagacgcccaggggctgggctgtccccgaaagcccaggagaggcaaagcaacgcgcagcgtcagggacgcgggcccaggggcggccgcggggggcgcctggaggagggaagcctctccggaggagaagagctgggcggccgccgtaggaggaagcggaaagataaggggccctcggctcggcggggccgccggacgcccaggagcctcaatggggacacgtcgggtggggacggaggcagctcctgtccggacagcgaaacccgcgaggcccaggagagcggcagccagcgcggcacagcccgggagctgcggcccacgccggagcctacggacatgggctcggaagggacaaaaaccgggccggagtcagcgctggagccaagcagcgacggcctggacagcgactggccccacgcagatacccggggccgggaagggtcgtcggggacggggcccctgggagccagcgagcattccggcggggactccgactcgagtccgctggggaccggacctggacggggctctcgggcagctatggcctccaggaccttcgaggacagctcgcgggctcctcgggacactgggccggccaaggacgcgagcgacaaccgggcgcagcggggcgccgagccagaaacaatgcaggcctcgacggcccgggctccgcgccaccaggtcggaaaggcggtggggcaggtgccagcggcggcaggcgagggcgaagcgggagccgcagcaggagcggggccggaggacccagccccgctggcggccctcctggtggtccgcaggctcctcgcgaggcccccgccaggcgccgcttcccaggccgtgggcccccgccgcgctggcctcaaggagcggctcctgagtgtagcgcgagccctgggcctcctgcgctggctgcggcggcggctgcggctgcggcggcggccgccagagggcgaggggcagggtaccgggccacgggcgagcgaggggtggggccgccggaaaccggacgaggggcggggtcatgggagaggaagcaaggggcggggccgcgggaaagcggatgaagggcggggccacgagcgaggggacgagggtcggggccgcgggaaagcggacgaagggcggggccacgagcgagggtacgaggggcggggctgcgggaaagcggacgaggggcggggtcacgagagaggtgacgagggccgggaccaccagagagggtacgaggggtggggccgtgagcccgggctgcggcaccgtctagcgttgcgcctggctggcttagcagggctggggggtatgccgagggcttcccctggtggccgctccccgcaggtcccgacaagcccagtccccggcgacccttttgatcaggaggacgagactccagatcccaagttcgcggtcgtgttccccaggatccacagggcagggcgggcgtcgagcagccgcagctctgaagaagcgtccgcagatgcccccacgggggaaggccgaggttggcctcgtgcaggggtgggggggcacagtgaggggtgcaggacgagtggggaaggggtgtccgggcttcgtcgcggctccctccttgccccgactgcacccgacgggccttccctcgacgagagcggctccagcagtgaggcggagttggagaccctcaatgacgagcccccggtgcgctgggcgcagggctcaggcccccacgagggtcctaggcttggcgccgccgtgctgctaccccgactctccttggagacccgcctgcagcaggagggagacccgggcctccgtgggtccctgagggagctgtgggaacccgaggatgaggacgaggcggtgctggagagggacctggagctgagcctccggccgggcctggaggcgccacccttccccggtgccaagggcaggagcctcggagacggcctggaagacatggaggacctggcgcggttgcggctggtgtgtgacagctctgtgctgctgtgcctcaagaagagatttcacctgggccgtatctatacctttggggggcctgtcttgcttgttctgaacccccaccggtccttgcctcttttttcacctgaggtccaggcaagctaccaccccaggaaggccctcagcaccactccacacatctttgccatcgtggcatcagcctatgacctggctcagaatactgggcaggacccatgcatcctcctgtgctcctcccactgcagtgggcacagtggctcagggaagacggaagccgccaaaaagatcatgcagttcctaagcagcctggagcaggatcagacggggaaccgagagtgtcaggtggaggatatgctgcctatactcagcagctttggccatgccaagaccatcctcaatgccaatgccagccgcttcggccaggtcttctgcctctacctacagcaaggggtcatcgtgggagcctctgtgtctcattatctacttgagacctccagggtggtgtttcaggcccaggctgagcggagcttccatgttttttacaagctgctggcagggctggactccatagagcgggagcggctctccctgcagggaccggagacttactactacctcaaccagggccaggcctgcaggctgcaaggcaaggaggatgcccaggactttgaggggctgctgaaggcactgcaggggctcggcttgtgcccagaggagttgaatgccgtctgggctgtgctggccgccatcctgcagctgggcaacatctgcttctcctcctcagagcgagagtcccaggaggtggctgctgtgtctagctgggctgagatccacacagcagcccgactgctgcgggtaccaccagagtgcctggagggggctgtcaccaggagggtcacggagacgccctatggccaggtctcgcgatccctgcccgtggaaagtgcctttgatgccagggacgccctggccaaggcactgtattcccgcctcttccaccggcttctgaggagaaccaatgcacggctggcaccaccaggggagggaggcagcattggcaccgtcactgtcgtggatgcctacggctttgaggccctgcgggtgaatggcctggagcaactgtgcaacaacctcgccagcgagcgcctacagctcttctccagccagatgctgctggcccaggaggagATGCTGGATCCCCTGAGCAGTGCAGAAAATTCCTTGTCTGGAAGCTGCCAATCCTTGGACAGGTCAGCAGACAGCCCATCCTTCCGGAAATCACGAATGTCCCGTGCCCAGAGCTTCCCTGACAACAGACAGGAATACTCAGATCGGGAAACTCAGCTTTATGACAAAGGGGTCAAAGGTGGAACCTACCCCCGGCGCTACCACGTGTCTGTGCACCACAAGGACTACAGTGATGGCAGAAGAACATTTCCCCGAATACGGCGTCATCAAGGCAACTTGTTCACCCTGGTGCCCTCCAGCCGCTCCCTGAGCACAAATGGCGAGAACATGGGTCTGGCTGTGCAATACCTGGACCCCCGTGGGCGCCTGCGGAGTGCGGACAGCGAGAATGCCCTCTCTGTGCAGGAGAGGAATGTGCCAACCAAGTCTCCCAGTGCCCCCATCAACTGGCGCCGGGGAAAGCTCCTGGGCCAGGGTGCCTTCGGCAGGGTCTATTTGTGCTATGACGTGGACACGGGACGTGAACTTGCTTCCAAGCAGGTCCAATTTGATCCAGACAGTCCTGAGACAAGCAAGGAGGTGAGTGCTCTGGAGTGCGAGATCCAGTTGCTAAAGAACTTGCAGCATGAGCGCATCGTGCAGTACTATGGCTGTCTGCGGGACCGCGCTGAGAAGACCCTGACCATCTTCATGGAGTACATGCCAGGGGGCTCGGTGAAAGACCAGTTGAAGGCTTACGGTGCTCTGACAGAGAGCGTGACCCGAAAGTACACGCGGCAGATCCTGGAGGGCATGTCCTACCTGCACAGCAACATGATTGTTCACCGGGACATTAAGGGAGCCAACATCCTCCGAGACTCTGCTGGGAATGTAAAGCTGGGGGACTTTGGGGCCAGCAAACGCCTGCAGACGATCTGTATGTCGGGGACGGGCATGCGCTCCGTCACTGGCACACCCTACTGGATGAGCCCTGAGGTGATCAGCGGCGAGGGCTATGGAAGGAAAGCAGACGTGTGGAGCCTGGGCTGCACTGTGGTGGAGATGCTGACAGAGAAACCACCGTGGGCAGAGTATGAAGCTATGGCCGCCATCTTCAAGATTGCCACCCAGCCCACCAATCCTCAGCTGCCCTCCCACATCTCTGAACATGGCCGGGACTTCCTGAGGCGCATTTTTGTGGAGGCTCGCCAGAGACCTTCAGCTGAGGAGCTGCTCACACACCACTTTGCACAGCTCATGTACTGA MGRNQRKAPQRLERPGRPASGEQESGSASADGAPSRERRSDRGQADRAKPAAEPATAGGQGTPGGRRKPTAEGNGGCRRPGAGLSPKAQERQSNAQRQGRGPRGGRGGRLEEGSLSGGEELGGRRRRKRKDKGPSARRGRRTPRSLNGDTSGGDGGSSCPDSETREAQESGSQRGTARELRPTPEPTDMGSEGTKTGPESALEPSSDGLDSDWPHADTRGREGSSGTGPLGASEHSGGDSDSSPLGTGPGRGSRAAMASRTFEDSSRAPRDTGPAKDASDNRAQRGAEPETMQASTARAPRHQVGKAVGQVPAAAGEGEAGAAAGAGPEDPAPLAALLVVRRLLARPPPGAASQAVGPRRAGLKERLLSVARALGLLRWLRRRLRLRRRPPEGEGQGTGPRASEGWGRRKPDEGRGHGRGSKGRGRGKADEGRGHERGDEGRGRGKADEGRGHERGYEGRGCGKADEGRGHERGDEGRDHQRGYEGWGREPGLRHRLALRLAGLAGLGGMPRASPGGRSPQVPTSPVPGDPFDQEDETPDPKFAVVFPRIHRAGRASSSRSSEEASADAPTGEGRGWPRAGVGGHSEGCRTSGEGVSGLRRGSLLAPTAPDGPSLDESGSSSEAELETLNDEPPVRWAQGSGPHEGPRLGAAVLLPRLSLETRLQQEGDPGLRGSLRELWEPEDEDEAVLERDLELSLRPGLEAPPFPGAKGRSLGDGLEDMEDLARLRLVCDSSVLLCLKKRFHLGRIYTFGGPVLLVLNPHRSLPLFSPEVQASYHPRKALSTTPHIFAIVASAYDLAQNTGQDPCILLCSSHCSGHSGSGKTEAAKKIMQFLSSLEQDQTGNRECQVEDMLPILSSFGHAKTILNANASRFGQVFCLYLQQGVIVGASVSHYLLETSRVVFQAQAERSFHVFYKLLAGLDSIERERLSLQGPETYYYLNQGQACRLQGKEDAQDFEGLLKALQGLGLCPEELNAVWAVLAAILQLGNICFSSSERESQEVAAVSSWAEIHTAARLLRVPPECLEGAVTRRVTETPYGQVSRSLPVESAFDARDALAKALYSRLFHRLLRRTNARLAPPGEGGSIGTVTVVDAYGFEALRVNGLEQLCNNLASERLQLFSSQMLLAQEEMLDPLSSAENSLSGSCQSLDRSADSPSFRKSRMSRAQSFPDNRQEYSDRETQLYDKGVKGGTYPRRYHVSVHHKDYSDGRRTFPRIRRHQGNLFTLVPSSRSLSTNGENMGLAVQYLDPRGRLRSADSENALSVQERNVPTKSPSAPINWRRGKLLGQGAFGRVYLCYDVDTGRELASKQVQFDPDSPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGMRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQPTNPQLPSHISEHGRDFLRRIFVEARQRPSAEELLTHHFAQLMY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase 3 STE STE11 Q99759 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29779 FAM172A::KIAA0825 ENSG00000113391.19::ENSG00000185261.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 801 FALSE NA FALSE NA FAM172A ENSG00000113391.19 protein_coding - - chr5:93617725-94111699:- chr5:94050731:- chr5:92953431-93447404:- chr5:93386436:- KIAA0825 ENSG00000185261.16 protein_coding - - chr5:94150851-94618604:- chr5:94154124:- chr5:93486556-93954309:- chr5:93489829:- chr5:94041438,chr5:94041447 chr5:94250522,chr5:94250528 NA NA chr5:93377143,chr5:93377152 chr5:93586227,chr5:93586233 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WGG|21-36|0.36^Arb2-PARTIAL|102-309~|1.7e-10^Abhydrolase_6|152-168|0.23^Hydrolase_4-PARTIAL|274-309~|2.4e-06^Abhydrolase_6-PARTIAL|276-309~|5.6e-05 none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.04Mb];LOCAL_REARRANGEMENT:-:[41267] 9 3 9 2.7 ONLY_REF_SPLICE YES_LDAS 0.1849 GT 1.7968 AG 1.4295 ENST00000395965.8 1-309 ENST00000682413.1 3711-3828 chr5|-|[2]94050731-94050831[1]|[0]94053126-94053227[1]|[0]94074646-94074751[0]<==>chr5|-|[2]94154007-94154124[2] atgtctatttccttgagctctttaattttgttgccaatttggataaacatggcacaaatccagcagggaggtccagatgaaaaagaaaagactaccgcactgaaagatttattatctaggatagatttggatgaactaatgaaaaaagatgaaccgcctcttgattttcctgataccctggaaggatttgaatatgcttttaatgaaaagggacagttaagacacataaaaactggggaaccatttgtttttaactaccgggaagatttacacagatggaaccagaaaagatacgaggctctaggagagGTGGGAAATGAAGAAGGATGAAACACTAGAAGAGGAAGAAAAAGCAATACTGGAGCACTTAAAACAAATTTGCACCCCACAGAACTCTTCTGCCTCAGATAACATAGAGGAACAGTAA MSISLSSLILLPIWINMAQIQQGGPDEKEKTTALKDLLSRIDLDELMKKDEPPLDFPDTLEGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEVGNEEG*NTRRGRKSNTGALKTNLHPTELFCLR*HRGTV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA TRUE Lung adenocarcinoma,Breast invasive carcinoma LUNG,BREAST exact 93386436,93217176 TRUE,FALSE 93489829,93489829 TRUE,TRUE YES,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29780 UBA1::PFKFB1 ENSG00000130985.17::ENSG00000158571.11 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 796 FALSE NA FALSE NA UBA1 ENSG00000130985.17 protein_coding + + chrX:47190861-47215128:+ chrX:47201610:+ chrX:47050260-47074527:+ chrX:47061009:+ PFKFB1 ENSG00000158571.11 protein_coding - - chrX:54932961-54998534:- chrX:54937724:- chrX:54959394-55024967:- chrX:54964157:- chrX:47201824,chrX:47201815 chrX:54944842,chrX:54944851 NA NA chrX:47061223,chrX:47061214 chrX:54971275,chrX:54971284 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ThiF|69-213|1.3e-29^E1_FCCH|241-284|1.6e-22 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:7.72Mb] 9 9 9 8.65 ONLY_REF_SPLICE YES_LDAS 0.2789 GT 1.9656 AG 1.9656 ENST00000442035.5 1-853 ENST00000545676.5 904-1221 chrX|+|[0]47198314-47198355[2]|[0]47198803-47198919[2]|[0]47199048-47199106[1]|[2]47199209-47199377[2]|[0]47199480-47199614[2]|[0]47200894-47201000[1]|[2]47201276-47201366[2]|[0]47201478-47201610[0]<==>chrX|-|[2]54933403-54933462[0]|[2]54933821-54933885[1]|[0]54934947-54935009[1]|[0]54937595-54937724[0] atgctctgtgttatttatcatctcgataaccccgtggggaagatgtccagctcgccgctgtccaagaaacgtcgcgtgtccgggcctgatccaaagccgggttctaactgctcccctgcccagtccgtgttgtccgaagtgccctcggtgccaaccaacggaatggccaagaacggcagtgaagcagacatagacgagggcctttactcccggcagctgtatgtgttgggccatgaggcaatgaagcggctccagacatccagtgtcctggtatcaggcctgcggggcctgggcgtggagatcgctaagaacatcatccttggtggggtcaaggctgttaccctacatgaccagggcactgcccagtgggctgatctttcctcccagttctacctgcgggaggaggacatcggtaaaaaccgggccgaggtatcacagccccgcctcgctgagctcaacagctatgtgcctgtcactgcctacactggacccctcgttgaggacttccttagtggtttccaggtggtggtgctcaccaacacccccctggaggaccagctgcgagtgggtgagttctgtcacaaccgtggcatcaagctggtggtggcagacacgcggggcctgtttgggcagctcttctgtgactttggagaggaaatgatcctcacagattccaatggggagcagccactcagtgctatggtttctatggttaccaaggacaaccccggtgtggttacctgcctggatgaggcccgacacgggtttgagagcggggactttgtctccttttcagaagtacagggcatggttgaactcaacggaaatcagcccatggagatcaaagtcctggTCCTATGAGGATCTGGTTCAGCGTCTGGAGCCAGTGATAATGGAGCTAGAACGACAGGAGAATGTACTGGTGATCTGCCACCAGGCTGTCATGCGGTGCCTCCTGGCCTATTTCCTGGATAAAAGTTCAGATGAGCTTCCATATCTCAAGTGCCCTCTGCACACAGTGCTCAAACTCACTCCTGTGGCTTATGGCTGCAAAGTGGAATCCATCTACCTGAATGTGGAGGCCGTGAACACACACCGGGAGAAGCCTGAGAATGTGGACATCACCCGGGAACCTGAGGAAGCCCTGGATACTGTCCCAGCCCACTACTGA MLCVIYHLDNPVGKMSSSPLSKKRRVSGPDPKPGSNCSPAQSVLSEVPSVPTNGMAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNTPLEDQLRVGEFCHNRGIKLVVADTRGLFGQLFCDFGEEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFESGDFVSFSEVQGMVELNGNQPMEIKVLVL*GSGSASGASDNGARTTGECTGDLPPGCHAVPPGLFPG*KFR*ASISQVPSAHSAQTHSCGLWLQSGIHLPECGGREHTPGEA*ECGHHPGT*GSPGYCPSPLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29782 ZNF652::ABCC3 ENSG00000198740.9::ENSG00000108846.16 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 803 FALSE NA FALSE NA ZNF652 ENSG00000198740.9 protein_coding - - chr17:49289206-49362473:- chr17:49361909:- chr17:47366568-47439835:- chr17:47439271:- ABCC3 ENSG00000108846.16 protein_coding + + chr17:50634777-50692253:+ chr17:50691092:+ chr17:48712138-48769614:+ chr17:48768453:+ chr17:49333419,chr17:49333403,chr17:49333398,chr17:49333397,chr17:49333380 chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772,chr17:50689772 NA NA chr17:47410781,chr17:47410765,chr17:47410760,chr17:47410759,chr17:47410742 chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133,chr17:48767133 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr17:1.27Mb] 7 0 7 0 ONLY_REF_SPLICE YES_LDAS 0.1106 GT 1.2729 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29789 GALK1::TRIM47 ENSG00000108479.13::ENSG00000132481.7 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 802 FALSE NA FALSE NA GALK1 ENSG00000108479.13 protein_coding - - chr17:75751594-75765236:- chr17:75762704:- chr17:73747675-73761317:- chr17:73758785:- TRIM47 ENSG00000132481.7 protein_coding - - chr17:75874164-75878581:- chr17:75876813:- chr17:73870245-73874662:- chr17:73872894:- chr17:75762662,chr17:75762666 chr17:75878170,chr17:75878175 NA NA chr17:73758743,chr17:73758747 chr17:73874251,chr17:73874256 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GalKase_gal_bdg|19-67|7.3e-26^GHMP_kinases_N|128-193|4e-18^GHMP_kinases_C|244-274|0.5^GHMP_kinases_C|292-372|9.6e-19 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.11Mb] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1422 GT 1.6895 AG 1.9329 ENST00000588479.6 1-793 ENST00000254816.6 676-1917 chr17|-|[0]75762704-75762885[2]|[1]75763014-75763149[1]|[0]75763320-75763439[1]|[0]75763897-75764086[0]|[2]75764972-75765136[0]<==>chr17|-|[2]75874483-75875123[1]|[0]75875400-75875474[1]|[0]75875901-75876099[0]|[2]75876262-75876492[0]|[2]75876718-75876813[0] atggctgctttgagacagccccaggtcgcggagctgctggccgaggcccggcgagccttccgggaggagttcggggccgagcccgagctggccgtgtcagcgccgggccgcgtcaacctcatcggggaacacacggactacaaccagggcctggtgctgcctatggctctggagctcatgacggtgctggtgggcagcccccgcaaggatgggctggtgtctctcctcaccacctctgagggtgccgatgagccccagcggctgcagtttccactgcccacagcccagcgctcgctggagcctgggactcctcggtgggccaactatgtcaagggagtgattcagtactacccagctgcccccctccctggcttcagtgcagtggtggtcagctcagtgcccctggggggtggcctgtccagctcagcatccttggaagtggccacgtacaccttcctccagcagctctgtccagactcgggcacaatagctgcccgcgcccaggtgtgtcagcaggccgagcacagcttcgcagggatgccctgtggcatcatggaccagttcatctcacttatgggacagaaaggccacgcgctgctcattgactgcaggtccttggagaccagcctggtgccactctcggaccccaagctggccgtgctcatcaccaactctaatgtccgccactccctggcctccagcgagtaccctgtgcggcggcgccaatgtgaagaagtggcccgggcgctgggcaaggaaagcctccgggaggtacaactggaagagctagaggGCTGAGCAGTCCAAAGTCCTGAGCGCCGTGGAGGACCGCATGGACGAGCTGGGTGCTGGCATTGCACAGTCCAGGCGCACAGTGGCCCTCATCAAGAGTGCAGCCGTAGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGCAGATGCTGCGGCCGCCCTGCAGGGCTTCCAGACCCAGGTGCTGGGCTTCATCGAGGAGGGGGAAGCTGCCATGCTAGGCCGCTCCCAGGGTGACCTGCGGCGACAGGAGGAACAGCGCAGCCGCCTGAGCCGAGCCCGCCAGAATCTCAGCCAGGTCCCTGAAGCTGACTCAGTCAGCTTCCTGCAGGAGCTGCTGGCACTAAGGCTGGCCCTGGAGGATGGGTGTGGCCCTGGGCCTGGACCCCCGAGGGAGCTCAGCTTCACCAAATCATCCCAAGCTGTCCGTGCAGTGAGAGACATGCTGGCCGTGGCCTGCGTCAACCAGTGGGAGCAGCTGAGGGGGCCGGGTGGCAACGAGGATGGGCCACAGAAGCTGGACTCGGAAGCTGATGCTGAGCCCCAAGACCTCGAGAGTACGAACCTCTTGGAGAGTGAAGCTCCCAGGGACTATTTCCTCAAGTTTGCCTATATTGTGGATTTGGACAGCGACACAGCAGACAAGTTCCTGCAGCTGTTTGGAACCAAAGGTGTCAAGAGGGTGCTGTGTCCTATCAACTACCCCTTGTCGCCCACCCGCTTCACCCATTGTGAGCAGGTGCTGGGCGAGGGTGCCCTGGACCGAGGCACCTACTACTGGGAGGTGGAGATTATCGAGGGCTGGGTCAGCATGGGGGTCATGGCCGAAGACTTCTCCCCACAAGAGCCCTACGACCGCGGCCGGCTGGGCCGCAACGCCCACTCCTGCTGCCTGCAGTGGAATGGACGCAGCTTCTCCGTCTGGTTTCATGGGCTGGAGGCTCCCCTGCCCCACCCCTTCTCGCCCACGGTTGGGGTCTGCCTGGAATACGCTGACCGTGCCTTGGCCTTCTATGCTGTACGGGACGGCAAGATGAGCCTCCTGCGGAGGCTGAAGGCCTCCCGGCCCCGCCGGGGTGGCATCCCGGCCTCCCCCATTGACCCCTTCCAGAGCCGCCTGGACAGTCACTTTGCGGGGCTCTTCACCCACAGACTCAAGCCTGCCTTCTTCCTGGAGAGTGTGGACGCCCACTTGCAGATCGGGCCCCTCAAGAAGTCCTGCATATCCGTGCTGAAGAGGAGGTGA MAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEG*AVQSPERRGGPHGRAGCWHCTVQAHSGPHQECSRSRAGEGEPAVCRCCGRPAGLPDPGAGLHRGGGSCHARPLPG*PAATGGTAQPPEPSPPESQPGP*S*LSQLPAGAAGTKAGPGGWVWPWAWTPEGAQLHQIIPSCPCSERHAGRGLRQPVGAAEGAGWQRGWATEAGLGS*C*APRPREYEPLGE*SSQGLFPQVCLYCGFGQRHSRQVPAAVWNQRCQEGAVSYQLPLVAHPLHPL*AGAGRGCPGPRHLLLGGGDYRGLGQHGGHGRRLLPTRALRPRPAGPQRPLLLPAVEWTQLLRLVSWAGGSPAPPLLAHGWGLPGIR*PCLGLLCCTGRQDEPPAEAEGLPAPPGWHPGLPH*PLPEPPGQSLCGALHPQTQACLLPGECGRPLADRAPQEVLHIRAEEEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29790 SLC35B1::PRKCA ENSG00000121073.15::ENSG00000154229.12 MDAMB453 SRR8615577 SRR8652126 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 799 FALSE NA FALSE NA SLC35B1 ENSG00000121073.15 protein_coding - - chr17:49700934-49709014:- chr17:49702858:- chr17:47778296-47786376:- chr17:47780220:- PRKCA ENSG00000154229.12 protein_coding + + chr17:66302613-66810743:+ chr17:66732688:+ chr17:64298731-64806861:+ chr17:64728806:+ chr17:49702723,chr17:49702729 chr17:66704519,chr17:66704513 NA NA chr17:47780085,chr17:47780091 chr17:64700637,chr17:64700631 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EamA|52-68|0.24^UAA|53-348|4.4e-56^TPT|86-190|2.7e-09^EamA|90-192|1.5e-09^EamA|208-345|1.3e-11^TPT|254-344|7.1e-12 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:16.59Mb] 3 6 3 6 ONLY_REF_SPLICE YES_LDAS 0.1422 GT 1.5058 AG 1.8892 ENST00000649906.1 1-1027 ENST00000413366.8 919-2019 chr17|-|[0]49702858-49703011[0]|[2]49703188-49703294[1]|[0]49704100-49704226[0]|[2]49705124-49705281[1]|[0]49705866-49705896[0]|[2]49706204-49706334[1]|[0]49706965-49707068[2]|[1]49707730-49707944[0]<==>chr17|+|[0]66732688-66732825[2]|[0]66735489-66735662[2]|[0]66738764-66738855[1]|[2]66741659-66741721[1]|[2]66742622-66742760[2]|[0]66773987-66774067[2]|[0]66786867-66786974[2]|[0]66788839-66788979[2]|[0]66803873-66804037[2] atgaggcccctgccgccggtcggcgatgtccggctggagctgtcgcctccgccgccgctgctgccggtgccggttgtgagcgggtctccagtcggctcctctgggcgtctcatggcctctagcagctccctggtgcccgaccggctgcgcctgccgctctgcttcctgggtgtctttgtctgctatttttactatgggatcctgcaggaaaagataacaagaggaaagtatggggaaggagccaagcaggagacgttcacctttgccttaactttggtcttcattcaatgtgtgatcaatgctgtgtttgccaagatcttgatccagttttttgacactgccagggtggatcgtacccggagctggctctatgctgcctgttctatctcctatctgggtgccatggtctccagcaattcagcactacagtttgtcaactacccaactcaggtccttggtaaatcctgcaagccaatcccagtcatgctccttggggtgaccctcttgaagaagaagtacccgttggccaagtacctgtgtgtgctgttaattgtggctggagtggcccttttcatgtacaaacccaagaaagttgttgggatagaagaacacacagtcggctatggagagctactcttgctattatcgctgaccctggatggactgactggtgtttcccaggaccacatgcgggctcattaccaaacaggctccaaccacatgatgctgaacatcaacctttggtcgacattgctgctgggaatgggaatcctgttcactggggagctctgggagttcttgagctttgctgaaaggtaccctgccatcatctataacatcctgctctttgggctgaccagtgccctgggtcagagcttcatctttatgacggttgtgtattttggtcccctgacctgctccatcatcactacaactcgaaagttcttcacaattttggcctctgtgatcctcttcgccaatcccatcagccccatgcagtgggtgggcactgtgcttgtgttcctggAAAGCCAAACTTGGCCCTGCTGGCAACAAAGTCATCAGTCCCTCTGAAGACAGGAAACAACCTTCCAACAACCTTGACCGAGTGAAACTCACGGACTTCAATTTCCTCATGGTGTTGGGAAAGGGGAGTTTTGGAAAGGTGATGCTTGCCGACAGGAAGGGCACAGAAGAACTGTATGCAATCAAAATCCTGAAGAAGGATGTGGTGATTCAGGATGATGACGTGGAGTGCACCATGGTAGAAAAGCGAGTCTTGGCCCTGCTTGACAAACCCCCGTTCTTGACGCAGCTGCACTCCTGCTTCCAGACAGTGGATCGGCTGTACTTCGTCATGGAATATGTCAACGGTGGGGACCTCATGTACCACATTCAGCAAGTAGGAAAATTTAAGGAACCACAAGCAGTATTCTATGCGGCAGAGATTTCCATCGGATTGTTCTTTCTTCATAAAAGAGGAATCATTTATAGGGATCTGAAGTTAGATAACGTCATGTTGGATTCAGAAGGACATATCAAAATTGCTGACTTTGGGATGTGCAAGGAACACATGATGGATGGAGTCACGACCAGGACCTTCTGTGGGACTCCAGATTATATCGCCCCAGAGATAATCGCTTATCAGCCGTATGGAAAATCTGTGGACTGGTGGGCCTATGGCGTCCTGTTGTATGAAATGCTTGCCGGGCAGCCTCCATTTGATGGTGAAGATGAAGACGAGCTATTTCAGTCTATCATGGAGCACAACGTTTCCTATCCAAAATCCTTGTCCAAGGAGGCTGTTTCTGTCTGCAAAGGACTGATGACCAAACACCCAGCCAAGCGGCTGGGCTGTGGGCCTGAGGGGGAGAGGGACGTGAGAGAGCATGCCTTCTTCCGGAGGATCGACTGGGAAAAACTGGAGAACAGGGAGATCCAGCCACCATTCAAGCCCAAAGTGTGTGGCAAAGGAGCAGAGAACTTTGACAAGTTCTTCACACGAGGACAGCCCGTCTTAACACCACCTGATCAGCTGGTTATTGCTAACATAGACCAGTCTGATTTTGAAGGGTTCTCGTATGTCAACCCCCAGTTTGTGCACCCCATCTTACAGAGTGCAGTATGA MRPLPPVGDVRLELSPPPPLLPVPVVSGSPVGSSGRLMASSSSLVPDRLRLPLCFLGVFVCYFYYGILQEKITRGKYGEGAKQETFTFALTLVFIQCVINAVFAKILIQFFDTARVDRTRSWLYAACSISYLGAMVSSNSALQFVNYPTQVLGKSCKPIPVMLLGVTLLKKKYPLAKYLCVLLIVAGVALFMYKPKKVVGIEEHTVGYGELLLLLSLTLDGLTGVSQDHMRAHYQTGSNHMMLNINLWSTLLLGMGILFTGELWEFLSFAERYPAIIYNILLFGLTSALGQSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLESQTWPCWQQSHQSL*RQETTFQQP*PSETHGLQFPHGVGKGEFWKGDACRQEGHRRTVCNQNPEEGCGDSG**RGVHHGRKASLGPA*QTPVLDAAALLLPDSGSAVLRHGICQRWGPHVPHSASRKI*GTTSSILCGRDFHRIVLSS*KRNHL*GSEVR*RHVGFRRTYQNC*LWDVQGTHDGWSHDQDLLWDSRLYRPRDNRLSAVWKICGLVGLWRPVV*NACRAASI*W*R*RRAISVYHGAQRFLSKILVQGGCFCLQRTDDQTPSQAAGLWA*GGEGRERACLLPEDRLGKTGEQGDPATIQAQSVWQRSREL*QVLHTRTARLNTT*SAGYC*HRPV*F*RVLVCQPPVCAPHLTECSM FALSE FALSE NA NA TRUE hsa-mir-634 chr17:66787072-66787168:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C alpha type AGC PKC PKCa P17252 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29791 EZR::OSTCP1 ENSG00000092820.19::ENSG00000243775.2 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EZR ENSG00000092820.19 protein_coding - - chr6:158765741-158819368:- chr6:158818082:- chr6:159186773-159240400:- chr6:159239114:- OSTCP1 ENSG00000243775.2 transcribed_processed_pseudogene - - chr6:158841117-158857632:- chr6:158842139:- chr6:159262149-159278664:- chr6:159263171:- chr6:158816895,chr6:158816899 chr6:158850474,chr6:158850475 NA NA chr6:159237927,chr6:159237931 chr6:159271506,chr6:159271507 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];LOCAL_REARRANGEMENT:-:[21705] 79 26 79 26 ONLY_REF_SPLICE YES_LDAS 3.2061 GT 1.6402 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ezrin 1 Yes NSCLC epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29792 BRIP1::VMP1 ENSG00000136492.10::ENSG00000062716.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 805 FALSE NA FALSE NA BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61859796:- chr17:59756500-59940920:- chr17:59937157:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59817712:+ chr17:57784553-57919616:+ chr17:57895073:+ chr17:61859341,chr17:61859345 chr17:59814849,chr17:59814845 NA NA chr17:59936702,chr17:59936706 chr17:57892210,chr17:57892206 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ResIII|20-57|9.4e-06^T2SSE|22-57|0.0002^DEAD|23-62|1.8e-07^T2SSE|189-204|0.017 none ["BRIP1:ArcherDX_panel","BRIP1:FoundationOne_panel","BRIP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.84Mb] 24 10 24 10 ONLY_REF_SPLICE YES_LDAS 1.0381 GT 1.9086 AG 1.2729 ENST00000682369.1 1-205 ENST00000710770.1 995-1188 chr17|-|[0]61859796-61859907[0]|[2]61861447-61861539[0]<==>chr17|+|[1]59817712-59817773[2]|[0]59838295-59838397[0]|[1]59839768-59839796[2] atgtcttcaatgtggtctgaatatacaattggtggggtgaagatttactttccttataaagcttacccgtcacagcttgctatgatgaattctattctcagaggattaaacagcaagcaacattgtttgttggagagtcccacaggaagtggaaaaagcttagccttactttgttctgctttagcatggcaacaatctcttagtgAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MSSMWSEYTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAWQQSLSENFCYNNIQQAHSGANGGFHWCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense FALSE NA NA NA NA NA NA NA NA NA 29793 TMEM104::CDK12 ENSG00000109066.14::ENSG00000167258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 806 TRUE 1430 TRUE 553 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74790296:+ chr17:72772638-72835892:+ chr17:72786435:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39530631:+ chr17:37617739-37723812:+ chr17:37686884:+ chr17:74790855,chr17:74790854 chr17:39527106,chr17:39527104 NA NA chr17:72786994,chr17:72786993 chr17:37683359,chr17:37683357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["TMEM104:Oncogene"];["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:35.21Mb] 20 16 20 7.71 ONLY_REF_SPLICE YES_LDAS 0.8461 GT 1.7819 AG 1.8256 ENST00000417024.6 1-385 ENST00000447079.6 3788-4473 chr17|+|[0]74777331-74777375[2]|[0]74777578-74777738[1]|[2]74788789-74788870[2]|[0]74790200-74790296[0]<==>chr17|+|[1]39530631-39531316[2] atggcgggtgaaattacagagaccggggaactctactcttcctacgtgtttgtcagagtggtcaagccaaacaaaatcgccatgctgtttataatgttaatcccgggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaagcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatgcttcgtgaccaccacctttgtgatagaggccatggctgcagccaacgcgcagctccactggaagaggatggagaacctcaaggaggaggaagatgacgactcctccacagcctcagacagcgatgttctcatccgggacaactacgagcgggcagagaagcggcccatcctgtctgtgcAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAGGGTCAGTGCAGTTTCCAGGGGACCAGGACCTCCGTTTTGCCAGGGTCCCCTTAGCGTTACACCCGGTGGTCGGGCAACCATTCCTGAAGGCTGAGGGAAGCAGCAATTCTGTGGTACATGCAGAGACCAAATTGCAAAACTATGGGGAGCTGGGGCCAGGAACCACTGGGGCCAGCAGCTCAGGAGCAGGCCTTCACTGGGGGGGCCCAACTCAGTCTTCTGCTTATGGAAAACTCTATCGGGGGCCTACAAGAGTCCCACCAAGAGGGGGAAGAGGGAGAGGAGTTCCTTACTAA MAGEITETGELYSSYVFVRVVKPNKIAMLFIMLIPGWARWLTPVIPALWEAEAGRSPEVRSSRPAWPTCFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRPMEYSTRPRPNRTYGNTDGPETGFSAIDTDERNSGPALTESLVQTLVKNRTFSGSLSHLGESSSYQGTGSVQFPGDQDLRFARVPLALHPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPGTTGASSSGAGLHWGGPTQSSAYGKLYRGPTRVPPRGGRGRGVPY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 29795 TANC2::PSMD12 ENSG00000170921.16::ENSG00000197170.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 808 TRUE 1431 TRUE 554 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099357:+ chr17:61043596-61505064:+ chr17:61176718:+ PSMD12 ENSG00000197170.10 protein_coding - - chr17:67337916-67366605:- chr17:67350336:- chr17:65334032-65362721:- chr17:65346452:- chr17:63140617,chr17:63140618 chr17:67353115,chr17:67353095 NA NA chr17:61217978,chr17:61217979 chr17:65349231,chr17:65349211 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none PCI|280-396|4.8e-27^RPN5_C|402-433|3.5e-19 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:3.91Mb] 19 3 19 2.81 ONLY_REF_SPLICE YES_LDAS 0.6659 GT 1.8062 AG 1.9899 ENST00000689528.1 1-322 ENST00000357146.4 238-1311 chr17|+|[0]63009560-63009626[0]|[1]63073943-63074014[0]|[1]63099175-63099357[0]<==>chr17|-|[2]67340843-67341052[0]|[2]67342186-67342263[0]|[2]67344606-67344780[2]|[1]67345745-67345857[0]|[2]67347116-67347250[0]|[2]67347336-67347485[0]|[2]67348550-67348654[0]|[2]67350229-67350336[0] atgtttcggaatagtctcaagatgctgcttactggtgggaaatcaagtcgtaaaaacaggtcaagtgatggagggagcgaggaaccaccggatcgaagacagtcaagtgtagactctcgccaaagccgctctgggcaaggtggcatctccacagaaagcgactgtgcttttgagccagactacgctgtcccgccacttccagtgagtgaaggtatgcagcacattcggattatggagggcatgtctcgctctcttccatcctcccccttactcacacatcagtctatcagtgttcggctccagcctgtgaagaagttaactgGCTGTTGCCAAAATGGTTCAACAGTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAGGCAAGATTTATGTTGAAATTGAGCGTGCGCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAATGGTGATGTGAAAGAGGCAGCCTCCATTTTACAGGAGTTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAAGAGCGAGTGGAATTTATTTTGGAGCAAATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTTTCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTATTTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCTGAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACAAGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTTGTTGAGGACTATGGAATGGAATTAAGAAAAGGTTCCCTTGAGAGTCCTGCAACGGATGTTTTTGGTTCTACAGAGGAAGGTGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTATACTCGGATAACAATGAAAAGGATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCCGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAGACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGACTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACGCATCTCATAGCCAAAGAGGAGATGATACATAATCTACAATAA MFRNSLKMLLTGGKSSRKNRSSDGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSEGMQHIRIMEGMSRSLPSSPLLTHQSISVRLQPVKKLTGCCQNGSTVLYLC*GNHRPSYQTSIN*YSTNGYRRQDLC*N*ACATD*NISNYKRTKW*CERGSLHFTGVTGGNLRVNGKERASGIYFGANEALPSCEGLHSNTNHQQEN*HQIFPGRKYREIKVEVL*FNDSAGST*GILFVYL*ALQSNI*YSLYTGRK*KMAAGSEECCTLCYPGSF*Q*TVRFGSPNKW*QEVRRNSQIQGSFKAFYHNGVDALVHTC*GLWNGIKKRFP*ESCNGCFWFYRGR*KKVERLEEQSC*T*Y*NNGQVLYSDNNEKDGTASGSIC**VRSLSLKSSS*QDHLC*SRQISRNYQLPETQGSK*FIK*LVSETELINVSG*QNYASHSQRGDDT*STI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29797 TMEM104::CDK12 ENSG00000109066.14::ENSG00000167258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 807 TRUE 1430 TRUE 553 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74790296:+ chr17:72772638-72835892:+ chr17:72786435:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39530604:+ chr17:37617739-37723812:+ chr17:37686857:+ chr17:74790855,chr17:74790854 chr17:39527106,chr17:39527104 NA NA chr17:72786994,chr17:72786993 chr17:37683359,chr17:37683357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["TMEM104:Oncogene"];["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:35.21Mb] 16 17 16 7.55 ONLY_REF_SPLICE YES_LDAS 0.719 GT 1.7819 AG 1.7465 ENST00000417024.6 1-385 ENST00000447079.6 3761-4473 chr17|+|[0]74777331-74777375[2]|[0]74777578-74777738[1]|[2]74788789-74788870[2]|[0]74790200-74790296[0]<==>chr17|+|[1]39530604-39531316[2] atggcgggtgaaattacagagaccggggaactctactcttcctacgtgtttgtcagagtggtcaagccaaacaaaatcgccatgctgtttataatgttaatcccgggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaagcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatgcttcgtgaccaccacctttgtgatagaggccatggctgcagccaacgcgcagctccactggaagaggatggagaacctcaaggaggaggaagatgacgactcctccacagcctcagacagcgatgttctcatccgggacaactacgagcgggcagagaagcggcccatcctgtctgtgcCATGTCCTCCTCACATTCTTCCACCAGAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAGGGTCAGTGCAGTTTCCAGGGGACCAGGACCTCCGTTTTGCCAGGGTCCCCTTAGCGTTACACCCGGTGGTCGGGCAACCATTCCTGAAGGCTGAGGGAAGCAGCAATTCTGTGGTACATGCAGAGACCAAATTGCAAAACTATGGGGAGCTGGGGCCAGGAACCACTGGGGCCAGCAGCTCAGGAGCAGGCCTTCACTGGGGGGGCCCAACTCAGTCTTCTGCTTATGGAAAACTCTATCGGGGGCCTACAAGAGTCCCACCAAGAGGGGGAAGAGGGAGAGGAGTTCCTTACTAA MAGEITETGELYSSYVFVRVVKPNKIAMLFIMLIPGWARWLTPVIPALWEAEAGRSPEVRSSRPAWPTCFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVPCPPHILPPEKRPPEPPGPPPPPPPPPLVEGDLSSAPQELNPAVTAALLQLLSQPEAEPPGHLPHEHQALRPMEYSTRPRPNRTYGNTDGPETGFSAIDTDERNSGPALTESLVQTLVKNRTFSGSLSHLGESSSYQGTGSVQFPGDQDLRFARVPLALHPVVGQPFLKAEGSSNSVVHAETKLQNYGELGPGTTGASSSGAGLHWGGPTQSSAYGKLYRGPTRVPPRGGRGRGVPY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 29798 MAP1LC3B::ZNF821 ENSG00000140941.14::ENSG00000102984.15 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 813 FALSE NA FALSE NA MAP1LC3B ENSG00000140941.14 protein_coding + + chr16:87383953-87404779:+ chr16:87392467:+ chr16:87417559-87438385:+ chr16:87426073:+ ZNF821 ENSG00000102984.15 protein_coding - - chr16:71859680-71895336:- chr16:71868037:- chr16:71893583-71929239:- chr16:71901940:- chr16:87393442,chr16:87393437 chr16:71871188,chr16:71871193 NA NA chr16:87427048,chr16:87427043 chr16:71905091,chr16:71905096 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BRAP2|12-36|0.00022^ATG8-PARTIAL|15-40~|7.3e-22^Cytochrom_B559a-PARTIAL|26-40~|3.7e-05 DDHD-PARTIAL|~41-78|0.017^zf-C2H2_4|118-140|0.00037^zf-C2H2_11|118-125|7.4^zf-C2H2|119-140|0.0036^zf-Di19|119-171|4.6e-07^zf-C2H2_9|119-141|0.0095^Rad50_zn_hook|119-124|0.55^DUF5810|119-137|0.41^zf-met|120-137|0.00062^zf-C2H2_jaz|120-137|0.017^zf-H2C2_2|135-158|0.005^DZR|145-193|0.00025^zf-Di19|149-189|2.8e-05^zf-C2H2_11|149-171|1.8e-06^DUF5810|149-170|0.0015^zf-C2H2_4|150-172|1.7e-06^zf-C2H2|150-172|1e-06^zf-met|150-169|0.0072^zf-C2H2_6|150-169|0.0025^zf-C2H2_jaz|150-165|0.097^zf-C2H2_9|151-177|0.001^Rad50_zn_hook|151-161|0.00076^DUF6011|152-165|0.00068^zf-H2C2_2|167-189|0.00046^DUF6011|175-184|0.18^zf-C2H2_6|179-189|0.0057^zf-C2H2_jaz|179-193|0.21^Rad50_zn_hook|179-189|3^zf-C2H2_4|180-193|0.04^zf-C2H2|180-194|0.039^zf-met|180-195|0.00087^zf-C2H2_11|180-190|0.004^DZR|238-241|2.2^STPRs|270-342|1.9e-08^DDHD|274-384|0.0045^STPRs|315-359|5.5e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:15.49Mb] 15 2 15 2 ONLY_REF_SPLICE YES_LDAS 0.5191 GT 1.7968 AG 1.8256 ENST00000565788.1 1-40 ENST00000565601.5 41-1239 chr16|+|[0]87392428-87392467[0]<==>chr16|-|[2]71860018-71860672[2]|[1]71861776-71861942[0]|[2]71864138-71864242[0]|[2]71864903-71865048[1]|[0]71867912-71868037[1] atgccgtcggagaagaccttcaagcagcgccgcaccttcgGGGATCAAGTATTTGCTGGGCTAGAAGAGCAAGCCCGCCAGGCGATGATGAAAACTGATTTTCCTGGAGACCTTGGCAGTCAGCGACAAGCTATCCAACAACTAAGAGATCAGGACTCCAGTAGCAGTGACAGTGAGGGTGATGAAGAGGAGACGACACAAGATGAAGTCTCTTCCCACACATCAGAGGAAGATGGAGGGGTGGTCAAAGTGGAGAAAGAGTTAGAAAATACAGAACAGCCTGTTGGTGGGAACGAAGTGGTAGAGCACGAGGTCACAGGGAATTTGAATTCTGACCCCTTGCTTGAACTCTGCCAGTGTCCCCTCTGCCAGCTAGACTGCGGGAGCCGGGAGCAGTTGATTGCTCACGTGTACCAGCACACTGCAGCAGTGGTGAGCGCCAAGAGCTACATGTGTCCTGTCTGTGGCCGGGCCCTTAGCTCCCCGGGGTCATTGGGTCGCCACCTCTTAATCCACTCGGAGGACCAGCGATCTAACTGTGCTGTGTGTGGAGCCCGGTTCACCAGCCATGCCACTTTTAACAGTGAGAAACTTCCTGAAGTACTAAATATGGAATCCCTACCCACAGTCCACAATGAGGGTCCCTCCAGTGCTGAGGGGAAGGATATTGCCTTTAGTCCTCCAGTGTACCCTGCTGGAATTCTGCTTGTGTGCAACAACTGTGCTGCCTACCGTAAACTGCTGGAAGCCCAGACTCCCAGTGTACGCAAGTGGGCTCTACGTCGACAGAATGAGCCTTTGGAAGTACGGCTGCAGCGGCTGGAACGAGAGCGCACGGCCAAGAAGAGCCGGCGGGACAATGAGACCCCCGAGGAGCGGGAGGTGAGGCGCATGAGGGACCGTGAAGCCAAGCGCTTGCAGCGCATGCAGGAGACAGACGAGCAGCGGGCACGCCGGCTGCAGCGGGATCGGGAGGCCATGAGGCTGAAGCGGGCCAATGAAACCCCGGAAAAGCGGCAGGCCCGGCTCATCCGAGAGCGAGAGGCCAAGCGGCTCAAGAGGAGGCTGGAGAAAATGGACATGATGTTGCGAGCTCAGTTTGGCCAGGACCCTTCTGCCATGGCAGCCTTAGCAGCTGAAATGAACTTCTTCCAGCTGCCTGTAAGTGGGGTGGAGTTGGACAGCCAGCTTCTGGGCAAGATGGCCTTTGAAGAGCAGAACAGCAGCTCTCTGCACTGA MPSEKTFKQRRTFGDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENTEQPVGGNEVVEHEVTGNLNSDPLLELCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPTVHNEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNSSSLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29799 TOX3::GNAO1 ENSG00000103460.17::ENSG00000087258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 812 FALSE NA FALSE NA TOX3 ENSG00000103460.17 protein_coding - - chr16:52436417-52547802:- chr16:52463934:- chr16:52470329-52581714:- chr16:52497846:- GNAO1 ENSG00000087258.16 protein_coding + + chr16:56191390-56357444:+ chr16:56275931:+ chr16:56225302-56391356:+ chr16:56309843:+ chr16:52460550,chr16:52460553 chr16:56193793,chr16:56193790 NA NA chr16:52494462,chr16:52494465 chr16:56227705,chr16:56227702 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame IMUP|203-252|1.3e-05^HMG_box_2|252-317|7.2e-16^HMG_box|255-323|1.3e-21 G-alpha-PARTIAL|~162-343|6.2e-149^Roc|170-256|0.0012^Arf|176-277|2.8e-15^Gtr1_RagA|181-282|1.2e-06^DUF685|325-347|0.45 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:3.64Mb] 11 3 11 3 ONLY_REF_SPLICE YES_LDAS 0.4275 GT 1.7819 AG 1.9219 ENST00000219746.14 1-408 ENST00000638705.1 162-1065 chr16|-|[2]52463934-52464188[0]|[2]52468509-52468574[0]|[2]52546637-52546723[0]<==>chr16|+|[2]56275931-56276072[2]|[0]56328631-56328791[1]|[2]56334729-56334857[1]|[2]56336731-56336860[2]|[0]56351384-56351537[0]|[1]56354866-56355053[2] atggatgtgaggttctaccccgcggcggccggggaccctgccagcctggacttcgcgcagtgcctggggtactacggctacagcaagtttggaaataataataactatatgaatatggctgaggcgaacaatgcgttcttcgctgccagtgagcagacattccacacaccaagccttggggacgaggaattcgaaattccaccaatcacgcctcctccagagtcagaccctgccctaggcatgccggatgtactgctaccctttcaagccctcagcgatccattgccttcccagggaagtgaattcacaccccagtttccccctcaaagcctggacctcccttccattacaatctcaagaaatctcgtggaacaagatggcgtgcttcatagcagtgggttgcatatgGATCATCCATGAAGATGGCTTCTCCGGAGAAGACGTGAAACAGTACAAGCCTGTTGTCTACAGCAACACTATCCAGTCCCTGGCAGCCATCGTCCGGGCCATGGACACTTTGGGCATCGAATATGGTGATAAGGAGAGAAAGGCTGACGCCAAGATGGTGTGTGATGTGGTGAGTCGGATGGAAGACACCGAGCCCTTCTCTGCAGAGCTGCTTTCTGCCATGATGCGGCTCTGGGGCGACTCAGGAATCCAAGAGTGCTTCAACCGGTCCCGGGAGTATCAGCTCAACGACTCTGCCAAATACTACCTGGACAGCCTGGATCGGATTGGGGCCGCCGACTACCAGCCCACCGAGCAGGACATCCTCCGAACCAGGGTCAAAACCACTGGCATCGTAGAAACCCACTTCACATTCAAGAACCTCCACTTCAGGCTGTTTGACGTCGGAGGCCAGCGATCTGAACGCAAGAAGTGGATCCATTGCTTCGAGGACGTCACGGCCATCATTTTCTGTGTCGCGCTCAGCGGCTATGACCAGGTGCTCCACGAAGACGAAACCACGAACCGCATGCACGAGTCTCTCATGCTCTTCGACTCCATCTGTAACAACAAGTTCTTCATCGATACCTCCATCATTCTCTTCCTCAACAAGAAAGATCTCTTTGGCGAGAAGATCAAGAAGTCACCTTTGACCATCTGCTTTCCTGAATACACAGGCCCCAATACCTATGAAGACGCAGCCGCCTACATCCAAGCACAATTTGAAAGCAAAAACCGCTCACCCAACAAAGAAATATATTGTCACATGACTTGTGCCACAGACACGAATAACATCCAGGTGGTGTTCGACGCCGTCACCGACATCATCATTGCCAACAACCTCCGGGGCTGCGGCTTGTACTGA MDVRFYPAAAGDPASLDFAQCLGYYGYSKFGNNNNYMNMAEANNAFFAASEQTFHTPSLGDEEFEIPPITPPPESDPALGMPDVLLPFQALSDPLPSQGSEFTPQFPPQSLDLPSITISRNLVEQDGVLHSSGLHMDHP*RWLLRRRRETVQACCLQQHYPVPGSHRPGHGHFGHRIW**GEKG*RQDGV*CGESDGRHRALLCRAAFCHDAALGRLRNPRVLQPVPGVSAQRLCQILPGQPGSDWGRRLPAHRAGHPPNQGQNHWHRRNPLHIQEPPLQAV*RRRPAI*TQEVDPLLRGRHGHHFLCRAQRL*PGAPRRRNHEPHARVSHALRLHL*QQVLHRYLHHSLPQQERSLWREDQEVTFDHLLS*IHRPQYL*RRSRLHPSTI*KQKPLTQQRNILSHDLCHRHE*HPGGVRRRHRHHHCQQPPGLRLVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29800 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 810 TRUE 1432 TRUE 555 TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37499908:+ chr14:37667099-38048330:+ chr14:37969113:+ chr14:37603872,chr14:37603873 chr14:37490763,chr14:37490761 NA NA chr14:38073077,chr14:38073078 chr14:37959968,chr14:37959966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.04Mb];LOCAL_REARRANGEMENT:+:[43486] 11 6 11 5.73 ONLY_REF_SPLICE YES_LDAS 0.5109 GT 1.8892 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 FALSE,FALSE|TRUE|TRUE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE|TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE|TRUE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE,TRUE|FALSE|FALSE|TRUE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE,TRUE|TRUE|FALSE,TRUE|FALSE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29801 CDYL::CDKAL1 ENSG00000153046.18::ENSG00000145996.11 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 814 FALSE NA FALSE NA CDYL ENSG00000153046.18 protein_coding + + chr6:4706159-4955551:+ chr6:4776807:+ chr6:4706393-4955785:+ chr6:4777041:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20955419:+ chr6:20534688-21232635:+ chr6:20955650:+ chr6:4888078,chr6:4888076 chr6:20953265,chr6:20953260 NA NA chr6:4888312,chr6:4888310 chr6:20953496,chr6:20953491 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Chromo-PARTIAL|7-24~|9.2e-24^Mtf2_C-PARTIAL|11-24~|5.8e-06^Tudor-knot-PARTIAL|11-24~|8.2e-05 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:15.58Mb] 9 2 9 2 ONLY_REF_SPLICE YES_LDAS 0.3359 GT 1.7968 AG 1.5058 ENST00000397588.8 1-24 ENST00000274695.8 743-1740 chr6|+|[0]4776784-4776807[2]<==>chr6|+|[1]20955419-20955585[2]|[0]21000227-21000372[1]|[2]21065048-21065228[2]|[0]21108401-21108463[2]|[0]21198021-21198104[2]|[0]21201110-21201274[2]|[0]21230848-21231039[2] atggcttccgaggagctgtacgagAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAATTAG MASEELYERVFVRYG*PVKTRGLMAEILAPISPHSCGNWLK*FLREQC*GLA*QIRPIF*SIWRKWQKSLITPESTLFCTYQSSLPPTAYSWK*KENTVWLTSKE*WIF*KRKFLE*LLLQILSVVFLEKQIRIFKKQ*NLLKSTNSQACLLTNFTQDQELLLQKWNKFQHK*KSKGQKIFLGCFILTVHMITRLVKDNKC**QKNLLIPSFMLHTINSMSRF*CQRTLRSWGRWLKWTSMNQANIL*KGSQYLMPKCTRPPSANR*QREKSRV*QRTSEMGLGTS*VQDPTPLLHLSVTQRVPEWCCPCQGYIKTVR*GCPWAWLCWVFFLLFLSRSII FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29804 MTMR4::CUEDC1 ENSG00000108389.10::ENSG00000180891.13 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 815 FALSE NA FALSE NA MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58504050:- chr17:56566890-56595266:- chr17:56581411:- CUEDC1 ENSG00000180891.13 protein_coding - - chr17:57861243-57955412:- chr17:57871369:- chr17:55938604-56032773:- chr17:55948730:- chr17:58504006,chr17:58503486,chr17:58504008 chr17:57871645,chr17:57871764,chr17:57871644 NA NA chr17:56581367,chr17:56580847,chr17:56581369 chr17:55949006,chr17:55949125,chr17:55949005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Myotub-related|142-532|1.5e-139^Y_phosphatase|383-436|7.5e-06^DSPc|393-433|4.1e-06^Y_phosphatase3|410-438|1.9e-05^FYVE|1124-1188|2.1e-21 none ["CUEDC1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.53Mb] 7 0 7 0 ONLY_REF_SPLICE YES_LDAS 0.2137 GT 1.8892 AG 1.8892 ENST00000682306.1 1-1698 ENST00000360238.6 785-1161 chr17|-|[2]58504050-58504220[0]|[2]58504303-58504488[0]|[2]58504779-58504974[2]|[1]58505472-58505583[1]|[0]58506743-58506871[1]|[0]58507123-58507319[2]|[1]58508161-58508274[2]|[1]58508468-58508564[1]|[0]58508681-58508841[2]|[1]58511429-58511511[0]|[2]58512390-58512506[0]|[2]58512852-58512941[0]|[2]58514363-58514407[0]<==>chr17|-|[2]57866477-57866544[1]|[0]57867357-57867415[2]|[1]57868150-57868243[1]|[0]57869122-57869193[1]|[0]57871286-57871369[1] atgagcctgaccgcccgcgtctcctgctccatgcttagctgcttcggtgaggaggggccccccagcctggagtacatccaagccaaggatctgttcccccccaaggaactagtgaaggaggaagagaatcttcaggtccccttcacagtgctgcagggtgagggagtagagttcctgggccgggcagccgatgccctcattgccatctctaactaccggctgcatatcaaattcaaggactctgtcatcaacgtccccctccggatgattgacagtgtggagagccgtgatatgttccagttgcacatttcctgcaaggactccaaagtggtgaggtgccacttctccacttttaagcagtgccaagagtggctctcacggctaagccgagccacagcaagacctgccaagcctgaagacctctttgcctttgcctaccatgcctggtgcctggggctgaccgaggaggaccagcacactcacctatgtcagccaggtgagcacatacgttgtcgacaggaggcggagcttgcaaggatgggctttgacctgcagaacgtctggagagtctcacacatcaacagcaactacaaattgtgccccagttacccccagaagctgctggttcctgtgtggatcactgacaaagagctggagaacgtggcttccttccgctcctggaagcggattcccgtggttgtgtatagacacttgcgcaatggggctgccatcgcccgctgcagccagccagagatcagctggtggggctggcgcaatgctgatgatgagtacctggtcacgtccattgctaaagcctgtgccctggacccggggacaagggccactgggggctccctcagcaccgggaataatgataccagcgaggcgtgtgatgctgactttgattcttctctgactgcgtgctctggagtggagagcacagcagctcctcaaaagctgctgatcctggatgcgcgatcctacacggcagcagtggccaaccgggccaagggtggaggctgtgaatgtgaagagtactatcccaactgtgaggtcgtgttcatgggaatggccaacatccatgccatccggaacagctttcagtacctccgggctgtgtgtagccagatgccggatcctagcaactggttgtcggcactggagagtaccaaatggctgcagcacttgtcggtgatgctaaaagcagctgtgctggtggctaatacagtagaccgggaaggccggcctgtgctggtacactgctcagatggctgggaccgcacaccgcagatcgtagccctggccaaaatattactggacccatattacaggacgttggagggcttccaagtgttagtggagtctgactggctggattttgggcacaagtttggagatcgctgtggccaccaagagaatgtggaggaccaaaacgaacaatgccctgtgttcctccagtggcttgattctgttcatcagttgcttaagcagttcccctgcctgtttgaatttaatgaagcattcctggtaaaactggtgcaacacacatactcctgcctctacggcaccttcctggccaacaacccctgtgagcgagagaagcgcaacatctacaagcggacctgctctgtgtgggcgctccttcgagctggcaataaaaactttcataacttcctctacacacccagctcagacatgATCGATTGAAATACGAATCCCAGAAATCTAAATCCAGCAGCGTGGCTGTCGGAAACGACTTTGGCTTTTCCTCTCCTGTCCCAGGAACTGGCGACGCCAACCCCGCTGTGTCTGAAGATGCCTTATTCAGGGACAAGCTGAAACACATGGGAAAGTCCACCCGGAGGAAACTGTTTGAACTTGCCCGAGCCTTCTCAGAGAAGACCAAAATGAGGAAGTCAAAGAGGAAACACTTGTTGAAGCATCAGTCGCTGGGGGCTGCCGCGTCAACAGCCAACCTCCTGGATGATGTGGAGGGCCACGCGTGTGATGAAGACTTCCGGGGCAGGCGTCAGGAGGCACCCAAGGTGGAGGAAGGCCTGCGAGAAGGACAGTAA MSLTARVSCSMLSCFGEEGPPSLEYIQAKDLFPPKELVKEEENLQVPFTVLQGEGVEFLGRAADALIAISNYRLHIKFKDSVINVPLRMIDSVESRDMFQLHISCKDSKVVRCHFSTFKQCQEWLSRLSRATARPAKPEDLFAFAYHAWCLGLTEEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVWRVSHINSNYKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADDEYLVTSIAKACALDPGTRATGGSLSTGNNDTSEACDADFDSSLTACSGVESTAAPQKLLILDARSYTAAVANRAKGGGCECEEYYPNCEVVFMGMANIHAIRNSFQYLRAVCSQMPDPSNWLSALESTKWLQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVALAKILLDPYYRTLEGFQVLVESDWLDFGHKFGDRCGHQENVEDQNEQCPVFLQWLDSVHQLLKQFPCLFEFNEAFLVKLVQHTYSCLYGTFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFLYTPSSDMID*NTNPRNLNPAAWLSETTLAFPLLSQELATPTPLCLKMPYSGTS*NTWESPPGGNCLNLPEPSQRRPK*GSQRGNTC*SISRWGLPRQQPTSWMMWRATRVMKTSGAGVRRHPRWRKACEKDS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29806 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 811 TRUE 1432 TRUE 555 TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37546905:+ chr14:37667099-38048330:+ chr14:38016110:+ chr14:37603872,chr14:37603873 chr14:37490763,chr14:37490761 NA NA chr14:38073077,chr14:38073078 chr14:37959968,chr14:37959966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.04Mb];LOCAL_REARRANGEMENT:+:[43486] 6 1 6 0.27 ONLY_REF_SPLICE YES_LDAS 0.1914 GT 1.8892 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 TRUE,TRUE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE|FALSE|FALSE,FALSE,FALSE|FALSE,TRUE|TRUE,FALSE|TRUE|TRUE|FALSE,FALSE,FALSE|TRUE|FALSE|TRUE,FALSE,FALSE|FALSE|TRUE,FALSE|TRUE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29807 TANC2::PSMD12 ENSG00000170921.16::ENSG00000197170.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 809 TRUE 1431 TRUE 554 TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099246:+ chr17:61043596-61505064:+ chr17:61176607:+ PSMD12 ENSG00000197170.10 protein_coding - - chr17:67337916-67366605:- chr17:67350336:- chr17:65334032-65362721:- chr17:65346452:- chr17:63140617,chr17:63140618 chr17:67353115,chr17:67353095 NA NA chr17:61217978,chr17:61217979 chr17:65349231,chr17:65349211 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none PCI|280-396|4.8e-27^RPN5_C|402-433|3.5e-19 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:3.91Mb] 5 1 5 0.19 ONLY_REF_SPLICE YES_LDAS 0.1585 GT 1.9329 AG 1.9899 ENST00000389520.8 1-211 ENST00000357146.4 238-1311 chr17|+|[0]63009560-63009626[0]|[1]63073943-63074014[0]|[1]63099175-63099246[0]<==>chr17|-|[2]67340843-67341052[0]|[2]67342186-67342263[0]|[2]67344606-67344780[2]|[1]67345745-67345857[0]|[2]67347116-67347250[0]|[2]67347336-67347485[0]|[2]67348550-67348654[0]|[2]67350229-67350336[0] atgtttcggaatagtctcaagatgctgcttactggtgggaaatcaagtcgtaaaaacaggtcaagtgatggagggagcgaggaaccaccggatcgaagacagtcaagtgtagactctcgccaaagccgctctgggcaaggtggcatctccacagaaagcgactgtgcttttgagccagactacgctgtcccgccacttccagtgagtgaagGCTGTTGCCAAAATGGTTCAACAGTGCTGTACTTATGTTGAGGAAATCACAGACCTTCCTATCAAACTTCGATTAATTGATACTCTACGAATGGTTACCGAAGGCAAGATTTATGTTGAAATTGAGCGTGCGCGACTGACTAAAACATTAGCAACTATAAAAGAACAAAATGGTGATGTGAAAGAGGCAGCCTCCATTTTACAGGAGTTACAGGTGGAAACCTACGGGTCAATGGAAAAGAAAGAGCGAGTGGAATTTATTTTGGAGCAAATGAGGCTCTGCCTAGCTGTGAAGGATTACATTCGAACACAAATCATCAGCAAGAAAATTAACACCAAATTTTTCCAGGAAGAAAATACAGAGAAATTAAAGTTGAAGTACTATAATTTAATGATTCAGCTGGATCAACATGAGGGATCCTATTTGTCTATTTGTAAGCACTACAGAGCAATATATGATACTCCCTGTATACAGGCAGAAAGTGAAAAATGGCAGCAGGCTCTGAAGAGTGTTGTACTCTATGTTATCCTGGCTCCTTTTGACAATGAACAGTCAGATTTGGTTCACCGAATAAGTGGTGACAAGAAGTTAGAAGAAATTCCCAAATACAAGGATCTTTTAAAGCTTTTTACCACAATGGAGTTGATGCGTTGGTCCACACTTGTTGAGGACTATGGAATGGAATTAAGAAAAGGTTCCCTTGAGAGTCCTGCAACGGATGTTTTTGGTTCTACAGAGGAAGGTGAAAAAAGGTGGAAAGACTTGAAGAACAGAGTTGTTGAACATAATATTAGAATAATGGCCAAGTATTATACTCGGATAACAATGAAAAGGATGGCACAGCTTCTGGATCTATCTGTTGATGAGTCCGAAGCCTTTCTCTCAAATCTAGTAGTTAACAAGACCATCTTTGCTAAAGTAGACAGATTAGCAGGAATTATCAACTTCCAGAGACCCAAGGATCCAAATAATTTATTAAATGACTGGTCTCAGAAACTGAACTCATTAATGTCTCTGGTTAACAAAACTACGCATCTCATAGCCAAAGAGGAGATGATACATAATCTACAATAA MFRNSLKMLLTGGKSSRKNRSSDGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSEGCCQNGSTVLYLC*GNHRPSYQTSIN*YSTNGYRRQDLC*N*ACATD*NISNYKRTKW*CERGSLHFTGVTGGNLRVNGKERASGIYFGANEALPSCEGLHSNTNHQQEN*HQIFPGRKYREIKVEVL*FNDSAGST*GILFVYL*ALQSNI*YSLYTGRK*KMAAGSEECCTLCYPGSF*Q*TVRFGSPNKW*QEVRRNSQIQGSFKAFYHNGVDALVHTC*GLWNGIKKRFP*ESCNGCFWFYRGR*KKVERLEEQSC*T*Y*NNGQVLYSDNNEKDGTASGSIC**VRSLSLKSSS*QDHLC*SRQISRNYQLPETQGSK*FIK*LVSETELINVSG*QNYASHSQRGDDT*STI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29808 TMEM104::CDK12 ENSG00000109066.14::ENSG00000167258.16 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 1430 TRUE 553 TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74790292:+ chr17:72772638-72835892:+ chr17:72786431:+ CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39530631:+ chr17:37617739-37723812:+ chr17:37686884:+ chr17:74790855,chr17:74790854 chr17:39527106,chr17:39527104 NA NA chr17:72786994,chr17:72786993 chr17:37683359,chr17:37683357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["TMEM104:Oncogene"];["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:35.21Mb] 5 15 5 1.74 INCL_NON_REF_SPLICE YES_LDAS 0.2058 GT 1.7465 AG 1.8256 ENST00000417024.6 1-381 ENST00000447079.6 3788-4473 chr17|+|[0]74777331-74777375[2]|[0]74777578-74777738[1]|[2]74788789-74788870[2]|[0]74790200-74790292[2]<==>chr17|+|[1]39530631-39531316[2] atggcgggtgaaattacagagaccggggaactctactcttcctacgtgtttgtcagagtggtcaagccaaacaaaatcgccatgctgtttataatgttaatcccgggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaagcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatgcttcgtgaccaccacctttgtgatagaggccatggctgcagccaacgcgcagctccactggaagaggatggagaacctcaaggaggaggaagatgacgactcctccacagcctcagacagcgatgttctcatccgggacaactacgagcgggcagagaagcggcccatcctgtctAGAAGAGGCCCCCTGAGCCCCCCGGACCTCCACCGCCGCCACCTCCACCCCCTCTGGTTGAAGGCGATCTTTCCAGCGCCCCCCAGGAGTTGAACCCAGCCGTGACAGCCGCCTTGCTGCAACTTTTATCCCAGCCTGAAGCAGAGCCTCCTGGCCACCTGCCACATGAGCACCAGGCCTTGAGACCAATGGAGTACTCCACCCGACCCCGTCCAAACAGGACTTATGGAAACACTGATGGGCCTGAAACAGGGTTCAGTGCCATTGACACTGATGAACGAAACTCTGGTCCAGCCTTGACAGAATCCTTGGTCCAGACCCTGGTGAAGAACAGGACCTTCTCAGGCTCTCTGAGCCACCTTGGGGAGTCCAGCAGTTACCAGGGCACAGGGTCAGTGCAGTTTCCAGGGGACCAGGACCTCCGTTTTGCCAGGGTCCCCTTAGCGTTACACCCGGTGGTCGGGCAACCATTCCTGAAGGCTGAGGGAAGCAGCAATTCTGTGGTACATGCAGAGACCAAATTGCAAAACTATGGGGAGCTGGGGCCAGGAACCACTGGGGCCAGCAGCTCAGGAGCAGGCCTTCACTGGGGGGGCCCAACTCAGTCTTCTGCTTATGGAAAACTCTATCGGGGGCCTACAAGAGTCCCACCAAGAGGGGGAAGAGGGAGAGGAGTTCCTTACTAA MAGEITETGELYSSYVFVRVVKPNKIAMLFIMLIPGWARWLTPVIPALWEAEAGRSPEVRSSRPAWPTCFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSRRGPLSPPDLHRRHLHPLWLKAIFPAPPRS*TQP*QPPCCNFYPSLKQSLLATCHMSTRP*DQWSTPPDPVQTGLMETLMGLKQGSVPLTLMNETLVQP*QNPWSRPW*RTGPSQAL*ATLGSPAVTRAQGQCSFQGTRTSVLPGSP*RYTRWSGNHS*RLREAAILWYMQRPNCKTMGSWGQEPLGPAAQEQAFTGGAQLSLLLMENSIGGLQESHQEGEEGEEFLT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift 29809 ELOVL5::KLHL31 ENSG00000012660.14::ENSG00000124743.6 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 816 FALSE NA FALSE NA ELOVL5 ENSG00000012660.14 protein_coding - - chr6:53267398-53349179:- chr6:53348817:- chr6:53132196-53213977:- chr6:53213615:- KLHL31 ENSG00000124743.6 protein_coding - - chr6:53647916-53665756:- chr6:53652330:- chr6:53512714-53530554:- chr6:53517128:- chr6:53312708,chr6:53312710 chr6:53652587,chr6:53652586 NA NA chr6:53177506,chr6:53177508 chr6:53517385,chr6:53517384 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ELOVL5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.30Mb] 5 2 5 2 ONLY_REF_SPLICE YES_LDAS 0.2138 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29811 MED13::BRIP1 ENSG00000108510.10::ENSG00000136492.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 820 FALSE NA FALSE NA MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:61965006:- chr17:60019966-60142639:- chr17:60042367:- BRIP1 ENSG00000136492.10 protein_coding - - chr17:61679139-61863559:- chr17:61808757:- chr17:59756500-59940920:- chr17:59886118:- chr17:61963579,chr17:61963584,chr17:61963589 chr17:61829912,chr17:61829914,chr17:61829914 NA NA chr17:60040940,chr17:60040945,chr17:60040950 chr17:59907273,chr17:59907275,chr17:59907275 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Med13_C|546-585|0.34^MID_MedPIWI|1367-1724|3.3e-73^Med13_C|1488-1542|2^Med13_C|1760-2163|3.9e-108^MID_MedPIWI|1871-1897|0.99 Helicase_C_2|681-866|6.2e-53^ResIII|877-906|2.5 ["BRIP1:ArcherDX_panel","BRIP1:FoundationOne_panel","BRIP1:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.08Mb];NEIGHBORS[79084] 4 2 4 2 ONLY_REF_SPLICE YES_LDAS 0.1832 GT 1.8256 AG 1.6729 ENST00000397786.7 1-4844 ENST00000683039.1 628-3750 chr17|-|[1]61965006-61965468[1]|[0]61966462-61966651[0]|[2]61968035-61968258[1]|[0]61972727-61972888[1]|[0]61982198-61983114[2]|[1]61984171-61984367[0]|[2]61984651-61984865[1]|[0]61985000-61985090[0]|[2]61987007-61987128[1]|[0]61992540-61992621[0]|[2]61995152-61995365[2]|[1]62010550-62011233[2]|[1]62029541-62029651[2]|[1]62029851-62030013[1]|[0]62031444-62031638[1]|[0]62033787-62033984[1]|[0]62035463-62035608[2]|[1]62052537-62052705[1]|[0]62063067-62063301[0]|[2]62065140-62065205[0]<==>chr17|-|[2]61683296-61684140[1]|[0]61685836-61686165[1]|[0]61693430-61693512[2]|[1]61715951-61716063[0]|[2]61743013-61743134[1]|[0]61744432-61744591[0]|[2]61776401-61776562[0]|[2]61780261-61780401[0]|[2]61780840-61781005[2]|[1]61784270-61784424[0]|[2]61793597-61793729[2]|[1]61799100-61799299[0]|[2]61801253-61801474[0]|[2]61808467-61808757[0] atgagtgcctccttcgtgccgaacggggccagcctggaagattgtcactgtaacctcttctgcctggctgacttgacaggaattaagtggaaaaaatatgtatggcaaggcccaacttctgcccctattctgtttcctgtgacagaagaagaccccattttgagcagttttagtcgctgccttaaggcagatgtacttggtgtttggcggcgagatcaaagacctggaagaagagaattgtggatattttggtggggtgaagaccccagttttgctgaccttattcaccatgacttatcagaagaagaagatggagtgtgggagaatggactttcctatgaatgccgtactctgcttttcaaagcagttcacaatctattggaacggtgtttaatgaacaggaattttgtacgtattggcaagtggtttgtaaagccttatgaaaaagatgaaaaacctataaataaaagtgaacacttgtcctgctccttcacctttttcttgcatggagacagcaatgtttgtaccagtgtggaaattaaccaacatcaacctgtataccttctcagtgaagagcatatcacccttgctcaacagtctaatagcccatttcaagttatcttatgcccatttggactaaatggcactctcacaggacaggcattcaagatgtctgattcagctacaaaaaaattaattggtgaatggaaacagttctatcctatctcatgttgcttgaaggagatgtctgaagaaaaacaggaagatatggattgggaagatgattctttagctgcagtagaagttcttgttgctggtgtccgaatgatctacccagcatgctttgttctagtccctcagtcagacattcctactcctagccctgtgggatccactcactgttcatcttcttgcttgggtgtccaccaagtgcctgcttccacaagagatcctgctatgtcttcggttacgcttacaccacctacgtctcctgaggaagtccaaacagttgatcctcagtctgtccagaagtgggtcaaattttcttcagtatctgatggcttcaactccgatagtactagccaccatggtgggaaaatacccagaaaattagcaaatcatgtggtggatagagtttggcaagaatgcaatatgaacagagcacagaacaagaggaagtattctgcttcatcaggtggtctatgcgaagaagcgacagctgctaaagtggcatcctgggattttgttgaagccacacaaagaacaaattgcagttgtttgaggcacaaaaatctcaagtcaagaaatgctggacaacaaggacaggcaccatctttaggtcagcaacaacaaatacttcctaagcacaagaccaatgagaagcaagaaaagagtgaaaagccacagaaacgccccttgactccttttcaccatcgtgtgtctgttagtgatgatgttggcatggacgcagattcagccagccaaagacttgtgatctctgctccagacagtcaagtgagattttcaaatatccgaactaatgatgtagcaaagactcctcagatgcatggcaccgaaatggcaaattcacctcaaccacccccacttagtcctcacccttgtgatgtggttgatgaaggagtgactaaaacaccttcaactcctcagagtcaacatttttatcaaatgccaacaccagatcccttggttccttctaaaccaatggaagataggatagacagtttgtcccagtctttcccacctcaatatcaggaagctgtagaacctacagtatatgttggtacagcagtaaacttggaagaagatgaagccaatatagcctggaagtattacaagttcccaaagaaaaaagatgtagagtttttaccacctcaacttccaagtgataaattcaaggatgatccagttggaccttttggacaggaaagtgtaacatcagttacagagttaatggtgcaatgtaagaaacctttaaaagtttctgatgaattagtgcagcaatatcaaattaaaaaccagtgtctttcagcaatagcatctgatgcagaacaagaacctaaaattgatccatatgcatttgttgaaggagatgaggaattcctttttcctgataaaaaagatagacaaaatagtgagagagaagctggaaaaaaacacaaggtagaagatgggacatctagtgtaacagtgttatcacatgaagaagatgctatgtcattatttagtccctctatcaagcaagatgctccacgccctactagtcatgcccgtcctccatcaacaagtttgatttatgactcagacctggctgtctcttatactgaccttgataatctcttcaattctgatgaagatgaactaacacctggatctaaaaaatcagcaaatggatcagatgataaagccagctgcaaggaatcaaagacaggaaatctggacccgttatcttgcataagcactgcagatcttcataaaatgtatcctacaccaccatcattggaacaacatattatgggattttccccaatgaatatgaataataaagaatatggtagtatggatacaacacctggaggaactgttctagaaggaaatagttctagtataggagcgcagttcaaaattgaggttgatgagggattctgtagccccaaaccttctgaaattaaagatttttcttatgtctataagcctgaaaattgtcaaattctagtgggatgttccatgtttgcacctctaaaaactctaccaagccaatatctgccccctatcaaattgccagaagagtgtatttaccgtcagagttggactgttggaaaattggaattgctttcttcagggccttcaatgccattcatcaaagagggtgatggaagtaatatggatcaagaatatggcactgcttatacacctcaaactcatacttcttttgggatgcctcctagcagtgcacctcctagtaacagcggagcaggaattcttccttctccatccacccctcggtttccaactccaaggactccaaggactcctcggactcctcgtggagctggtggacctgctagtgctcaaggttcagtcaaatatgaaaattcagacttgtattcaccagcttctaccccatctacatgcagaccccttaattctgttgaacctgcaactgtcccttccatccctgaagcacacagtctttatgtaaacctcatcctttcagaatcagttatgaatttgtttaaagactgtaactttgatagttgttgcatctgtgtttgcaacatgaacatcaagggtgccgatgttggagtttacattccagatccaacgcaggaagcacaatataggtgtacctgtggcttcagtgctgtcatgaacagaaaatttggaaacaattcaggattatttcttgaagatgaactagatatcataggacgcaatacagactgtggcaaagaagcagaaaaacgttttgaagctctcagggctacctctgctgaacatgttaatggaggactaaaggaatctgaaaaattatctgatgatttgatattattgctacaagatcagtgcactaatttattttcaccctttggagcagcagaccaagatccttttcctaaaagtggtgtaattagcaattgggtacgtgttgaagagcgtgactgttgcaatgactgctaccttgcattagaacatgggcgtcagttcatggataacatgtcaggaggaaaagttgatgaagcacttgtgaaaagttcatgcttacacccctggtccaaaagaaacgatgtgagtatgcagtgctcacaggatatacttcgaatgctcctctctcttcagccagttcttcaggatgccattcagaaaaaaagaacagtaagaccttggggtgttcagggtcctctcacttggcaacaatttcataaaatggctggccgaggctcttatggaactgatgaatccccagaaccactgccaatccccacatttttgttgggttatgattatgattatctggtgctttctccatttgctcttccttattgggagagacttatgctggaaccctatggatctcaaagagatatagcctatgttgtactgtgtccagaaaatgaagccttgttaaatggagcaaaaagcttttttagagatcttactgcaatatatgagtcctgtcgattaggtcaacatagacctgtttctcgactgttaacagatgggatcatgagagttggatctactgcatcaaagaaactatcagaaaagttggtagcagaatggttttctcaggcagctgacggtaacaatgaagcattttctaaactcaagctttatgcacaagtctgcagatatgacctaggtccttatcttgcttccctgccattggacagctctctactttcccagccaaatttagttgcccctacaagtcagtctttgattactccacctcagatgacaaatactggaaatgctaatactccatctgccaccttagcatctgcagcgagcagcactatgacagtgacttcaggtgttgccatatctacttcagttgccacagctaattcaactttgaccacagcttcaacttcatcttcatcatcctccaacttgaatagtggagtatcatcaaataaactaccttcgtttccaccctttggcagtatgaacagtaatgctgcaggatccatgtctacacaagcaaatacagttcagagtggtcagctaggagggcaacagacatcagctctacagacagctgggatttctggagaatcatcttcacttcccactcagccgcatcctgatgtgtctgaaagCCCCCTGGCCACTGTTCTAGGTGCTGTTGTTCTACTAAACAAGGAAACAGTCAAGAGTCATCGAATACCATTAAGAAGGATCATACAGGGAAATCCAAGATACCCAAAATATATTTTGGGACACGCACACACAAGCAGATTGCTCAGATTACTAGAGAGCTCCGGAGGACGGCATATTCAGGGGTTCCAATGACTATTCTTTCCAGCAGGGATCATACTTGTGTCCATCCTGAGGTAGTCGGTAACTTCAACAGAAATGAGAAGTGCATGGAATTGCTAGATGGGAAAAACGGAAAATCCTGCTATTTTTATCATGGAGTTCATAAAATTAGTGATCAGCACACATTACAGACTTTCCAAGGGATGTGCAAAGCCTGGGATATAGAAGAACTTGTCAGCCTGGGGAAGAAACTAAAGGCCTGTCCATATTACACAGCCCGAGAACTAATACAAGATGCTGACATCATATTTTGTCCCTACAACTATCTTCTAGATGCACAAATAAGGGAAAGTATGGATTTAAATCTGAAAGAACAGGTTGTCATTTTAGATGAAGCTCATAACATCGAGGACTGTGCTCGGGAATCAGCAAGTTACAGTGTAACAGAAGTTCAGCTTCGGTTTGCTCGGGATGAACTAGATAGTATGGTCAACAATAATATAAGGAAGAAAGATCATGAACCCCTACGAGCTGTGTGCTGTAGCCTCATTAATTGGTTAGAAGCAAACGCTGAATATCTTGTAGAAAGAGATTATGAATCAGCTTGTAAAATATGGAGTGGAAATGAAATGCTCTTAACTTTACACAAAATGGGTATCACCACTGCTACTTTTCCCATTTTGCAGGGACATTTTTCTGCTGTTCTTCAAAAAGAGGAAAAAATCTCACCAATTTATGGTAAAGAGGAGGCAAGAGAAGTACCTGTTATTAGTGCATCAACTCAAATAATGCTTAAAGGACTTTTTATGGTACTTGACTATCTTTTTAGGCAAAATAGCAGATTTGCAGATGATTATAAAATTGCGATTCAACAGACTTACTCCTGGACAAATCAGATTGATATTTCAGACAAAAATGGGTTGTTGGTTCTACCAAAAAATAAGAAACGTTCACGACAGAAAACTGCAGTTCATGTGCTAAACTTTTGGTGCTTAAATCCAGCTGTGGCCTTTTCAGATATTAATGGCAAAGTTCAGACCATTGTTTTGACATCTGGTACATTATCACCAATGAAATCCTTTTCGTCAGAACTTGGTGTTACATTTACTATCCAGCTGGAGGCTAATCATATCATTAAAAATTCACAGGTTTGGGTTGGTACCATTGGGTCAGGCCCCAAGGGTCGGAATCTCTGTGCTACCTTCCAGAATACTGAAACATTTGAGTTCCAAGATGAAGTGGGAGCACTTTTGTTATCTGTGTGCCAGACTGTGAGCCAAGGAATTTTGTGTTTCTTGCCATCTTACAAGTTATTAGAAAAATTAAAAGAACGTTGGCTCTCTACTGGTTTATGGCATAATCTGGAGTTGGTGAAGACAGTCATTGTAGAACCACAGGGAGGAGAAAAAACAAATTTTGATGAATTACTGCAGGTGTACTATGACGCAATCAAATACAAAGGAGAGAAAGATGGAGCTCTCCTGGTAGCAGTTTGTCGTGGTAAAGTGAGTGAGGGTCTGGATTTCTCAGATGACAATGCCCGTGCTGTCATAACAATAGGAATTCCTTTTCCAAATGTGAAAGATCTACAGGTTGAACTAAAACGACAATACAATGACCACCATTCAAAATTGAGAGGTCTTCTACCTGGCCGTCAGTGGTATGAAATTCAAGCATACAGGGCCTTAAACCAGGCCCTTGGTAGATGTATTAGACACAGAAATGATTGGGGAGCTCTTATTCTAGTGGATGATCGCTTTAGGAATAACCCAAGTCGCTATATATCTGGACTTTCTAAATGGGTACGGCAGCAGATTCAGCACCATTCAACCTTTGAAAGTGCACTGGAATCCTTGGCTGAATTTTCCAAAAAGCATCAAAAAGTTCTTAATGTATCCATAAAGGACAGAACCAATATACAGGACAATGAGTCTACACTTGAAGTGACCTCTTTAAAGTACAGTACCTCACCTTATTTACTGGAAGCAGCAAGTCATCTATCACCAGAAAATTTTGTGGAAGATGAAGCAAAGATATGTGTCCAGGAACTACAGTGTCCTAAAATTATTACCAAAAATTCACCTCTACCAAGTAGCATTATCTCCAGAAAGGAGAAAAATGATCCAGTATTCCTGGAAGAAGCAGGGAAAGCAGAAAAAATTGTGATTTCCAGATCCACAAGCCCAACTTTCAACAAACAAACAAAGAGAGTTAGCTGGTCAAGCTTTAATTCTTTGGGACAGTATTTTACTGGTAAAATACCGAAGGCAACACCTGAGCTCGGGTCATCAGAGAATAGTGCCTCTAGTCCTCCCCGTTTCAAAACAGAGAAGATGGAAAGTAAAACTGTTTTGCCCTTCACTGATAAATGTGAATCCTCAAATCTGACAGTAAACACATCGTTTGGATCATGCCCTCAATCAGAAACCATTATTTCATCATTAAAGATTGATGCCACCCTTACTAGAAAAAATCATTCTGAACATCCGCTCTGTTCTGAAGAAGCCCTGGATCCAGACATTGAATTGTCTCTAGTAAGTGAAGAAGATAAACAGTCCACTTCAAATAGAGATTTTGAAACAGAAGCAGAAGATGAATCTATCTATTTTACACCTGAACTTTATGATCCTGAAGATACAGATGAAGAAAAAAATGACCTAGCTGAAACTGATAGAGGAAATAGATTGGCTAACAATTCAGATTGCATTTTAGCTAAAGACCTTTTTGAAATTAGAACTATAAAAGAAGTAGATTCAGCCAGAGAAGTGAAAGCTGAGGATTGCATAGATACAAAGTTGAATGGAATTCTGCATATTGAAGAAAGTAAAATTGATGACATTGATGGTAATGTAAAAACAACTTGGATAAATGAACTGGAACTGGGAAAAACTCATGAAATAGAAATAAAGAACTTTAAACCATCTCCTTCCAAAAATAAAGGCATGTTTCCTGGTTTTAAGTAA MSASFVPNGASLEDCHCNLFCLADLTGIKWKKYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFWWGEDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGDSNVCTSVEINQHQPVYLLSEEHITLAQQSNSPFQVILCPFGLNGTLTGQAFKMSDSATKKLIGEWKQFYPISCCLKEMSEEKQEDMDWEDDSLAAVEVLVAGVRMIYPACFVLVPQSDIPTPSPVGSTHCSSSCLGVHQVPASTRDPAMSSVTLTPPTSPEEVQTVDPQSVQKWVKFSSVSDGFNSDSTSHHGGKIPRKLANHVVDRVWQECNMNRAQNKRKYSASSGGLCEEATAAKVASWDFVEATQRTNCSCLRHKNLKSRNAGQQGQAPSLGQQQQILPKHKTNEKQEKSEKPQKRPLTPFHHRVSVSDDVGMDADSASQRLVISAPDSQVRFSNIRTNDVAKTPQMHGTEMANSPQPPPLSPHPCDVVDEGVTKTPSTPQSQHFYQMPTPDPLVPSKPMEDRIDSLSQSFPPQYQEAVEPTVYVGTAVNLEEDEANIAWKYYKFPKKKDVEFLPPQLPSDKFKDDPVGPFGQESVTSVTELMVQCKKPLKVSDELVQQYQIKNQCLSAIASDAEQEPKIDPYAFVEGDEEFLFPDKKDRQNSEREAGKKHKVEDGTSSVTVLSHEEDAMSLFSPSIKQDAPRPTSHARPPSTSLIYDSDLAVSYTDLDNLFNSDEDELTPGSKKSANGSDDKASCKESKTGNLDPLSCISTADLHKMYPTPPSLEQHIMGFSPMNMNNKEYGSMDTTPGGTVLEGNSSSIGAQFKIEVDEGFCSPKPSEIKDFSYVYKPENCQILVGCSMFAPLKTLPSQYLPPIKLPEECIYRQSWTVGKLELLSSGPSMPFIKEGDGSNMDQEYGTAYTPQTHTSFGMPPSSAPPSNSGAGILPSPSTPRFPTPRTPRTPRTPRGAGGPASAQGSVKYENSDLYSPASTPSTCRPLNSVEPATVPSIPEAHSLYVNLILSESVMNLFKDCNFDSCCICVCNMNIKGADVGVYIPDPTQEAQYRCTCGFSAVMNRKFGNNSGLFLEDELDIIGRNTDCGKEAEKRFEALRATSAEHVNGGLKESEKLSDDLILLLQDQCTNLFSPFGAADQDPFPKSGVISNWVRVEERDCCNDCYLALEHGRQFMDNMSGGKVDEALVKSSCLHPWSKRNDVSMQCSQDILRMLLSLQPVLQDAIQKKRTVRPWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLLGYDYDYLVLSPFALPYWERLMLEPYGSQRDIAYVVLCPENEALLNGAKSFFRDLTAIYESCRLGQHRPVSRLLTDGIMRVGSTASKKLSEKLVAEWFSQAADGNNEAFSKLKLYAQVCRYDLGPYLASLPLDSSLLSQPNLVAPTSQSLITPPQMTNTGNANTPSATLASAASSTMTVTSGVAISTSVATANSTLTTASTSSSSSSNLNSGVSSNKLPSFPPFGSMNSNAAGSMSTQANTVQSGQLGGQQTSALQTAGISGESSSLPTQPHPDVSESPLATVLGAVVLLNKETVKSHRIPLRRIIQGNPRYPKYILGHAHTSRLLRLLESSGGRHIQGFQ*LFFPAGIILVSILR*SVTSTEMRSAWNC*MGKTENPAIFIMEFIKLVISTHYRLSKGCAKPGI*KNLSAWGRN*RPVHITQPEN*YKMLTSYFVPTTIF*MHK*GKVWI*I*KNRLSF*MKLITSRTVLGNQQVTV*QKFSFGLLGMN*IVWSTII*GRKIMNPYELCAVASLIG*KQTLNIL*KEIMNQLVKYGVEMKCS*LYTKWVSPLLLFPFCRDIFLLFFKKRKKSHQFMVKRRQEKYLLLVHQLK*CLKDFLWYLTIFLGKIADLQMIIKLRFNRLTPGQIRLIFQTKMGCWFYQKIRNVHDRKLQFMC*TFGA*IQLWPFQILMAKFRPLF*HLVHYHQ*NPFRQNLVLHLLSSWRLIISLKIHRFGLVPLGQAPRVGISVLPSRILKHLSSKMKWEHFCYLCARL*AKEFCVSCHLTSY*KN*KNVGSLLVYGIIWSW*RQSL*NHREEKKQILMNYCRCTMTQSNTKERKMELSW*QFVVVK*VRVWISQMTMPVLS*Q*EFLFQM*KIYRLN*NDNTMTTIQN*EVFYLAVSGMKFKHTGP*TRPLVDVLDTEMIGELLF*WMIALGITQVAIYLDFLNGYGSRFSTIQPLKVHWNPWLNFPKSIKKFLMYP*RTEPIYRTMSLHLK*PL*STVPHLIYWKQQVIYHQKILWKMKQRYVSRNYSVLKLLPKIHLYQVALSPERRKMIQYSWKKQGKQKKL*FPDPQAQLSTNKQRELAGQALILWDSILLVKYRRQHLSSGHQRIVPLVLPVSKQRRWKVKLFCPSLINVNPQI*Q*THRLDHALNQKPLFHH*RLMPPLLEKIILNIRSVLKKPWIQTLNCL**VKKINSPLQIEILKQKQKMNLSILHLNFMILKIQMKKKMT*LKLIEEIDWLTIQIAF*LKTFLKLEL*KK*IQPEK*KLRIA*IQS*MEFCILKKVKLMTLMVM*KQLG*MNWNWEKLMK*K*RTLNHLLPKIKACFLVLS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Lung LUNG no_match 61992540 FALSE 61693512 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE BRCA1 interacting protein C-terminal helicase 1 1 Yes AML, leukaemia, breast Fanconi anaemia J, breast cancer susceptiblity leukaemia_lymphoma, epithelial TSG frameshift, nonsense, missense 29812 TANC2::MTMR4 ENSG00000170921.16::ENSG00000108389.10 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 818 FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63340332:+ chr17:61043596-61505064:+ chr17:61417693:+ MTMR4 ENSG00000108389.10 protein_coding - - chr17:58489529-58517905:- chr17:58504488:- chr17:56566890-56595266:- chr17:56581849:- chr17:63346873,chr17:63346894,chr17:63346885,chr17:63346884,chr17:63346886 chr17:58505075,chr17:58505075,chr17:58505084,chr17:58505084,chr17:58505084 NA NA chr17:61424234,chr17:61424255,chr17:61424246,chr17:61424245,chr17:61424247 chr17:56582436,chr17:56582436,chr17:56582445,chr17:56582445,chr17:56582445 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|415-459|2.8e-06^DUF6079|426-471|5.7e-05^nSTAND3|437-479|0.001^AAA_16|517-622|2.2^nSTAND3|607-662|1.2^Ank|937-954|0.24^Ank_2|941-1020|8.9e-11^Ank_4|962-1011|1.2e-10^Ank|965-988|0.00041^Ank_3|970-987|0.55^Ank_5|978-1015|3.3e-05^Ank|992-1023|1.2e-05^Ank_3|992-1019|0.0063^Ank_4|1008-1045|7e-07^Ank_2|1017-1087|2.7e-11^Ank_5|1018-1051|1.1e-05^Ank|1024-1046|6.7e-05^Ank_3|1024-1047|9.9e-05^nSTAND3|1061-1115|2.1^Ank_4|1066-1085|0.019^Ank|1068-1085|0.0046^Ank_4|1068-1128|9.2e-07^Ank_3|1068-1086|0.29^Ank_5|1068-1092|0.28^Ank_2|1099-1171|5.6e-13^Ank_5|1106-1144|0.0083^Ank|1108-1138|1.2e-06^Ank_3|1108-1134|0.00035^Ank_4|1110-1161|2.1e-06^Ank|1141-1172|4.1e-06^Ank_2|1148-1234|2.5e-20^Ank_4|1149-1194|7.7e-11^Ank_3|1149-1169|0.0037^Ank_5|1160-1211|2.2e-10^Ank|1173-1205|6e-09^Ank_3|1174-1200|7.1e-06^Ank_5|1193-1247|4e-09^Ank|1207-1237|2.3e-06^Ank_3|1207-1233|1.7e-05^Ank_4|1208-1260|5.7e-14^Ank_2|1211-1301|1.6e-17^Ank_5|1226-1265|6.9e-07^Ank|1239-1270|2.5e-08^Ank_3|1239-1264|3.1e-06^Ank_4|1254-1293|3.3e-06^Ank_5|1259-1301|0.0017^Ank|1273-1302|0.012^Ank_3|1273-1299|0.038^TPR_2|1332-1360|0.00037^TPR_9|1332-1359|8.7^TPR_16|1334-1360|0.0039^TPR_11|1335-1356|2.9e-05^TPR_1|1335-1359|0.22^TPR_6|1335-1359|0.023^TPR_19|1340-1359|0.25^TPR_12|1371-1406|8.6e-05^TPR_2|1377-1407|0.00012^TPR_8|1377-1407|3.6e-05^TPR_14|1377-1418|0.0014^TPR_17|1377-1395|8.7^TPR_6|1378-1406|2.9^TPR_1|1384-1407|0.00034^TPR_16|1387-1442|5.8e-05^TPR_19|1389-1449|3.9e-05^ANAPC3|1389-1445|0.00016^TPR_17|1398-1429|3.1e-05^TPR_11|1400-1416|0.0056^TPR_9|1401-1449|3.8e-07^TPR_8|1409-1442|2e-05^TPR_2|1410-1442|1.1e-06^TPR_1|1410-1442|1.5e-06^TPR_14|1410-1451|9.3e-07^TPR_6|1410-1441|0.027^TPR_12|1411-1439|0.09^TPR_11|1424-1446|3.9e-05^TPR_17|1433-1442|6.4 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:4.49Mb] 3 2 3 2 ONLY_REF_SPLICE YES_LDAS 0.1527 GT 1.6729 AG 1.9656 ENST00000689528.1 1-1807 ENST00000682306.1 1342-3630 chr17|+|[0]63009560-63009626[0]|[1]63073943-63074014[0]|[1]63099175-63099357[0]|[1]63151270-63151380[0]|[1]63193991-63194139[2]|[0]63200771-63200957[0]|[1]63237814-63238077[0]|[1]63267748-63267873[0]|[1]63314388-63314669[0]|[1]63318957-63319090[2]|[0]63340101-63340332[0]<==>chr17|-|[2]58491663-58491840[2]|[1]58492511-58492599[0]|[2]58492842-58492952[0]|[2]58494932-58496330[2]|[1]58503744-58503898[0]|[2]58504050-58504220[0]|[2]58504303-58504488[0] atgtttcggaatagtctcaagatgctgcttactggtgggaaatcaagtcgtaaaaacaggtcaagtgatggagggagcgaggaaccaccggatcgaagacagtcaagtgtagactctcgccaaagccgctctgggcaaggtggcatctccacagaaagcgactgtgcttttgagccagactacgctgtcccgccacttccagtgagtgaaggtatgcagcacattcggattatggagggcatgtctcgctctcttccatcctcccccttactcacacatcagtctatcagtgttcggctccagcctgtgaagaagttaactgcccctctgaggaaggcaaagtttgttgagagcccacgaattccagaatccgagcttggctcaccaaccctcacttcagctcagaaactggacgtggatgcatactgccctggtgatgctgaacaggagcttggcccccctccatctgtagatgaggcagcaaacacactcatgactcgtctgggtttcctccttggagagaaagtcacagaagttcagccaggtgaccaatacagcatggaagtacaggatgaaaatcagacctcagcaatcacccagcggataagtccttgttccactctgactagcagcactgcctctccaccagccagtagcccctgctctacactcccacccatcagtacaaatgcaactgccaaggactgcagctatggggctgttactagtccaacctctacccttgaaagcagagatagtggcatcattgctacattaacaagctattctgaaaatgtggaacgcacaaaatatgctggggaaagcagtaaagaattaggatctggaggaaacataaaaccttggcagtctcaaaaatccagcatggactcctgtttgtatcgagtagatgaaaacatgactgcttccacctatagtctgaataagatcccagagagaaatttggaaacagtgttatctcaatcagtacagtctattcctttgtatctcatgccacggccaaattcagtagcagccaccagctctgcccacttggaagaccttgcttacctggatgagcagagacatacacctttgagaacttctctacgaatgccaagacagagcatgggtggtgctcgcacacagcaggatttaagagttcgctttgcaccttataggcctccagatatctccttgaagcctctgctctttgaagtgcccagcatcactacagagtcagtgtttgttggccgagattgggttttccacgaaatagatgctcaacttcaaagttcaaatgccagcgtgaaccaaggagtagtgattgtgggaaacattggattcggcaaaactgccatcatctccagactggtggccctcagctgccatggtacaaggatgagacagatcgcctcagacagcccacatgcctcccccaaacatgtggatgccaacagagagctgccactcacacagccaccttcagcccactcatctatcaccagtggaagctgcccaggaactccggaaatgcgcaggcggcaggaggaggctatgcgaagactagcctcgcaggtggttgcctatcactattgtcaagcagataatgcctacacttgcttggtgccagaatttgtccacaatgttgctgccttgctctgccgctcacctcagctgacagcctatcgggagcagcttcttcgggaacctcacctgcagagcatgctgagccttcgttcctgtgttcaagaccccatggcctccttccggaggggagttctggagccactagaaaatctccataaagGGCTTCCAAGTGTTAGTGGAGTCTGACTGGCTGGATTTTGGGCACAAGTTTGGAGATCGCTGTGGCCACCAAGAGAATGTGGAGGACCAAAACGAACAATGCCCTGTGTTCCTCCAGTGGCTTGATTCTGTTCATCAGTTGCTTAAGCAGTTCCCCTGCCTGTTTGAATTTAATGAAGCATTCCTGGTAAAACTGGTGCAACACACATACTCCTGCCTCTACGGCACCTTCCTGGCCAACAACCCCTGTGAGCGAGAGAAGCGCAACATCTACAAGCGGACCTGCTCTGTGTGGGCGCTCCTTCGAGCTGGCAATAAAAACTTTCATAACTTCCTCTACACACCCAGCTCAGACATGGTCCTGCATCCTGTTTGTCATGTCCGGGCCCTGCACCTCTGGACAGCTGTTTATCTGCCAGCATCATCTCCATGCACACTTGGGGAAGAAAACATGGATCTTTACCTTTCCCCAGTGGCCCAGAGCCAGGAGTTCTCTGGCCGCTCTCTGGACAGATTACCTAAAACCAGATCCATGGATGATCTTCTTTCTGCCTGTGACACAAGCAGCCCCCTGACTCGTACATCCAGTGACCCTAACCTGAATAACCACTGTCAGGAGGTCAGGGTAGGCCTGGAGCCCTGGCACAGCAATCCTGAGGGATCAGAGACAAGCTTTGTGGACTCTGGGGTAGGAGGGCCTCAGCAAACTGTAGGAGAAGTGGGTCTTCCTCCTCCTCTGCCCAGCAGCCAGAAAGACTACTTGAGCAATAAACCTTTCAAGAGTCACAAAAGCTGTTCTCCAAGTTACAAACTGCTTAATACCGCAGTGCCTCGGGAAATGAAGAGCAACACCTCTGATCCTGAGATCAAAGTCCTAGAAGAGACTAAGGGACCAGCTCCAGACCCTTCTGCCCAGGATGAGCTGGGTAGGACTTTAGATGGCATAGGGGAGCCACCTGAACATTGTCCTGAAACAGAAGCTGTCAGTGCACTCTCCAAGGTCATTTCTAACAAGTGTGATGGAGTTTGTAATTTTCCTGAGTCTTCCCAGAACTCTCCTACAGGTACGCCCCAACAGGCCCAGCCAGACTCCATGCTAGGTGTGCCCTCCAAGTGTGTTCTTGATCACAGCCTCAGCACCGTTTGCAACCCACCGAGTGCTGCCTGCCAAACTCCTCTAGACCCAAGCACTGACTTCCTCAACCAAGATCCCTCAGGGTCTGTGGCAAGTATCTCCCACCAGGAACAACTGAGTTCTGTGCCGGATCTGACCCATGGGGAGGAAGACATTGGTAAAAGAGGAAATAATAGGAATGGGCAGTTATTGGAAAATCCTCGCTTTGGGAAAATGCCATTGGAATTGGTCCGGAAGCCAATTTCTCAGAGCCAGATCAGTGAGTTCTCTTTTCTAGGGTCCAACTGGGACAGCTTCCAAGGGATGGTGACTTCATTCCCAAGTGGGGAGGCCACCCCTCGGCGGCTGCTTTCCTATGGCTGTTGTAGCAAGAGGCCAAACAGTAAGCAGATGCGGGCCACAGGGCCCTGCTTTGGGGGCCAGTGGGCTCAGAGAGAAGGTGTGAAGTCACCTGTCTGTTCTAGTCATTCCAATGGACATTGTACTGGCCCAGGAGGAAAGAACCAGATGTGGTTGTCCAGTCATCCAAAGCAAGTCTCTAGCACAAAGCCCGTTCCACTGAACTGCCCTTCTCCAGTGCCTCCTCTGTATTTGGATGATGATGGACTCCCCTTTCCCACGGATGTGATCCAGCATAGGTTACGGCAAATCGAAGCAGGGTACAAACAAGAGGTGGAGCAGCTACGTCGACAGGTGCGTGAGCTTCAGATGAGGCTGGACATCCGTCACTGCTGTGCCCCTCCAGCAGAGCCCCCCATGGACTATGAGGATGATTTTACATGTTTGAAGGAGTCAGATGGCAGTGATACTGAGGATTTTGGCTCTGATCACAGTGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCTGTTGATAAGAAAGAGACTGAGGTGACTCGCTGGGTTCCAGACCATATGGCATCACACTGCTATAACTGTGACTGTGAATTCTGGTTGGCCAAACGAAGACACCATTGCAGAAATTGTGGGAATGTATTTTGTGCTGGATGCTGCCACCTGAAGCTGCCCATTCCTGATCAGCAACTCTATGACCCAGTTCTCGTCTGTAACTCATGTTACGAACACATTCAAGTCTCTCGTGCCAGGGAACTCATGAGCCAACAGCTGAAGAAACCCATTGCTACAGCTTCCAGTTGA MFRNSLKMLLTGGKSSRKNRSSDGGSEEPPDRRQSSVDSRQSRSGQGGISTESDCAFEPDYAVPPLPVSEGMQHIRIMEGMSRSLPSSPLLTHQSISVRLQPVKKLTAPLRKAKFVESPRIPESELGSPTLTSAQKLDVDAYCPGDAEQELGPPPSVDEAANTLMTRLGFLLGEKVTEVQPGDQYSMEVQDENQTSAITQRISPCSTLTSSTASPPASSPCSTLPPISTNATAKDCSYGAVTSPTSTLESRDSGIIATLTSYSENVERTKYAGESSKELGSGGNIKPWQSQKSSMDSCLYRVDENMTASTYSLNKIPERNLETVLSQSVQSIPLYLMPRPNSVAATSSAHLEDLAYLDEQRHTPLRTSLRMPRQSMGGARTQQDLRVRFAPYRPPDISLKPLLFEVPSITTESVFVGRDWVFHEIDAQLQSSNASVNQGVVIVGNIGFGKTAIISRLVALSCHGTRMRQIASDSPHASPKHVDANRELPLTQPPSAHSSITSGSCPGTPEMRRRQEEAMRRLASQVVAYHYCQADNAYTCLVPEFVHNVAALLCRSPQLTAYREQLLREPHLQSMLSLRSCVQDPMASFRRGVLEPLENLHKGLPSVSGV*LAGFWAQVWRSLWPPRECGGPKRTMPCVPPVA*FCSSVA*AVPLPV*I**SIPGKTGATHILLPLRHLPGQQPL*AREAQHLQADLLCVGAPSSWQ*KLS*LPLHTQLRHGPASCLSCPGPAPLDSCLSASIISMHTWGRKHGSLPFPSGPEPGVLWPLSGQIT*NQIHG*SSFCL*HKQPPDSYIQ*P*PE*PLSGGQGRPGALAQQS*GIRDKLCGLWGRRASANCRRSGSSSSSAQQPERLLEQ*TFQESQKLFSKLQTA*YRSASGNEEQHL*S*DQSPRRD*GTSSRPFCPG*AG*DFRWHRGAT*TLS*NRSCQCTLQGHF*QV*WSL*FS*VFPELSYRYAPTGPARLHARCALQVCS*SQPQHRLQPTECCLPNSSRPKH*LPQPRSLRVCGKYLPPGTTEFCAGSDPWGGRHW*KRK**EWAVIGKSSLWENAIGIGPEANFSEPDQ*VLFSRVQLGQLPRDGDFIPKWGGHPSAAAFLWLL*QEAKQ*ADAGHRALLWGPVGSERRCEVTCLF*SFQWTLYWPRRKEPDVVVQSSKASL*HKARSTELPFSSASSVFG**WTPLSHGCDPA*VTANRSRVQTRGGAATSTGA*ASDEAGHPSLLCPSSRAPHGL*G*FYMFEGVRWQ*Y*GFWL*SQ*RLPFRSKLGTC**ERD*GDSLGSRPYGITLL*L*L*ILVGQTKTPLQKLWECILCWMLPPEAAHS*SATL*PSSRL*LMLRTHSSLSCQGTHEPTAEETHCYSFQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29814 TANGO6::CES4A ENSG00000103047.8::ENSG00000172824.17 MDAMB361 SRR8615581 SRR8652125 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 819 FALSE NA FALSE NA TANGO6 ENSG00000103047.8 protein_coding + + chr16:68843531-69085182:+ chr16:69040421:+ chr16:68877434-69119085:+ chr16:69074324:+ CES4A ENSG00000172824.17 protein_coding + + chr16:66988589-67010417:+ chr16:67000638:+ chr16:67022492-67044320:+ chr16:67034541:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HEAT_EZ|114-136|2.5^DUF3385|354-390|2.1^DUF3385|641-683|0.04^Maestro_HEAT|642-690|0.44^RTP1_C1|643-665|1.5^HEAT_EZ|717-742|0.0069^HEAT|721-742|2.3^RTP1_C1|723-741|5^DUF3385|798-892|0.4^Maestro_HEAT|823-920|0.0038^RTP1_C1|839-950|1.8e-37^HEAT|843-865|0.069^HEAT_EZ|853-890|0.02^HEAT|879-907|0.32^DUF3385|925-985|0.0038^HEAT|935-945|6^Maestro_HEAT|942-1045|4.4e-05^HEAT|958-987|0.00023^RTP1_C1|962-1034|0.4^HEAT_EZ|974-1021|0.015^DUF3385|1000-1051|0.057^HEAT|1009-1027|0.11^RTP1_C2|1042-1074|3.4e-13 COesterase-PARTIAL|~261-546|1.4e-163 ["DepMap2023"];INTRACHROMOSOMAL[chr16:1.83Mb] 2 2 2 2 ONLY_REF_SPLICE YES_LDAS 0.1222 GT 1.8892 AG 1.8892 ENST00000261778.2 1-3108 ENST00000648724.3 261-1686 chr16|+|[0]68843618-68843711[0]|[1]68859884-68860524[2]|[0]68862945-68863061[2]|[0]68867079-68867220[0]|[1]68875154-68875290[2]|[0]68878118-68878280[0]|[1]68880548-68880630[2]|[0]68900434-68900546[1]|[2]68902328-68902504[1]|[2]68907443-68907575[2]|[0]68909211-68909402[2]|[0]68919085-68919219[2]|[0]68927568-68928083[2]|[0]68930238-68930295[0]|[1]68974028-68974168[0]|[1]69022828-69022979[2]|[0]69040308-69040421[2]<==>chr16|+|[2]67000638-67000779[2]|[0]67000857-67000990[1]|[2]67001308-67001461[2]|[0]67003070-67003174[2]|[0]67003256-67003360[2]|[0]67003515-67003553[2]|[0]67004084-67004224[2]|[0]67004793-67004873[2]|[0]67005240-67005393[0]|[1]67006391-67006519[0]|[1]67006745-67006817[1]|[2]67008974-67009142[2] atggcggcccgacaggccgtgggcagcggggctcaggagacatgcggtctggatcggattttggaggcattgaagctgctgctgagcccgggaggctcgggctcaagttcactacaggtcacaaaacatgatgtcttgttggctactttaaaatctaacctgtctgctttggaggacaagtttctgaaggatcctcagtggaagaatctgaaactcctaagagatgaaattgctgataaggcagaatggccacaaaactctgtggatgtcacttggagttttacctctcaaaccttgttgttgcttttgtgcttgaaggaaaccatgatccgccttgcagctaatttcaatccaggtaaacccaaccctaggactccggaagttgctcctgccctgagccccgatgcacttagtatctcacaacagaagactgtccagttcgttttgcagtttgtagttaccttgggtatctgcccctatctcatgcctggtgttggagtccctttgagatatagaactgaatttggtgccgtcgttcaagacgtggtgtgttttgatgctgcccccgatgcaactcgaagactgtacaccagctgcaaggcccttctgaatgttgctcagcacacatctctggggagcttgatcttctgccaccactttggggatatcgcagcaggtctgtgccaactgggattctgcccaaccaaaagaaaactgctaacacctgcagaagaggttctaactgaagaggagagaaccctatccaggggggccttgagagacatgctggatcaagtctatcagcccttagcagtccgggaactgcttatcctccagggaggaccaccccagtcctgcacagatgtgaagacacagatgaggtgtcgggccccagcttggcttcggcgtctatgtggacagctgctctctgaaaggttaatgagacctaatggtgttcaggcagtagtccggggcattttggaaggagcaggtgcgggagcagctggtggaagtgatgctgaggtgacggctgctgactggaagaagtgtgacctgatcgcaaagattttggcctcttgtccccagcagtctctttcaccagagaattactacagggacatctgcccccaggttctggatttatttcactttcaagataaattgacagcacgacaatttcagagagttgccaccactacctttataactttgtcaagagaacgcccacatttggcagcaaagtatttgctccagccagtgttagctcctcttcatcgatgtttgaatacagcagagctttcagagagtgacatggtaccaggaactattttggtgacagaagaagaacttagtagatgcattgaggatgtgtttaaggtgtacgtggttgggaatgaacctttaacagttttgatggattccctgcttccagtcctgggagtgctttttcttctctactgttttactaagcagagtgtgtctcacataaggtcactttgccaagaaatcttattatggattctggggaagctggaaaggaagaaggcaattgccagcctgaaaggatttgcagggttggacaaagctgtgccctctctccattctctgtgtcagtttagagttgccactcaaggtggcattatgattaccatcaaagaggccattagtgatgaagatgaagatgaagccctgtaccagaaggtatcctctgagcagggccgggtggagcatctcggggacttgctgtcccactgccaggaatgcggtttggcaggagacttcttcatcttctgtttgaaagagttgactcatgtggcctcggaaaatgaaacagagttaaaaactgagcccttctccagcaagagcctcttggaattagagcaacatcagactcttcttgtggaaggccaagagcggaagctgcttgtcctgcagctgatggctgttctgtgcgagagaatgtctgagcagatattcacaaacgtcactcaggtggtggactttgtagcagcaacattgcagagagcctgtgcaagcctggcccatcaggcagagagcaccgtggaatcacagacgctgagcatgtccatggggctggtggctgtcatgctaggaggagctgttcagttgaagtcaagtgattttgctgttctgaagcagttgttgcctctgttggagaaggtatccaacacataccctgatccggtcatccaagaactcgctgttgatctccgcatcaccatctctacccatggagcctttgccactgaggccgtcagcatggctgcccaaagtacactgaacagaaaagatctggaagggaaaatagaagagcagcaacaaaccagtcatgaaagacccactgatgtagctcatagccaccttgaacaacagcagagccatgagacagccccccagacaggcctgcagtcaaatgctccaatcattcctcaaggagtcaatgagcccagcactactacaagtcagaaatctggaagcgtaaccacagaacagctccaagaggttcttttgtcagcttatgaccctcaaattccaacacgggctgctgccctgcgtactctttcccactggatagagcagagagaagcaaaagcccttgagatgcaagagaagcttctcaagatattcttggaaaacttggaacatgaagacacttttgtatatctatctgcaattcagggggttgccctgctgtcagacgtctatcctgagaaaatcttgccggacttgttggctcaatatgacagcagcaaagacaagcacacaccagagaccagaatgaaagtcggggaagtccttatgcgaatcgtcagggcattaggagacatggtctcaaagtaccgagaacctttgatccataccttcctgaggggagtgagagatcctgatggtgctcacagggccagcagcttggccaaccttggggagctgtgccagaggctggactttctgctgggctccgtggtccatgaggtaacagcttgcctgattgctgtggccaaaacagatggtgaagttcaagtacgcagagctgccatacatgtggttgtgctgctgcttcggggactcagccagaaagctactgagGTGCCTGCAGGAGTCCTGGGGCCAGCTGGCCTCGATGTACGTCAGCACGCGGGAACGGTACAAGTGGCTGCGCTTCAGCGAGGACTGTCTGTACCTGAACGTGTACGCGCCGGCGCGCGCGCCCGGGGATCCCCAGCTGCCAGTGATGGTCTGGTTCCCGGGAGGCGCCTTCATCGTGGGCGCTGCTTCTTCGTACGAGGGCTCTGACTTGGCCGCCCGCGAGAAAGTGGTGCTGGTGTTTCTGCAGCACAGGCTCGGCATCTTCGGCTTCCTGAGCACGGACGACAGCCACGCGCGCGGGAACTGGGGGCTGCTGGACCAGATGGCGGCTCTGCGCTGGGTGCAGGAGAACATCGCAGCCTTCGGGGGAGACCCAGGAAATGTGACCCTGTTCGGCCAGTCGGCGGGGGCCATGAGCATCTCAGGACTGATGATGTCACCCCTAGCCTCGGGTCTCTTCCATCGGGCCATTTCCCAGAGTGGCACCGCGTTATTCAGACTTTTCATCACTAGTAACCCACTGAAAGTGGCCAAGAAGGTTGCCCACCTGGCTGGATGCAACCACAACAGCACACAGATCCTGGTAAACTGCCTGAGGGCACTATCAGGGACCAAGGTGATGCGTGTGTCCAACAAGATGAGATTCCTCCAACTGAACTTCCAGAGAGACCCGGAAGAGATTATCTGGTCCATGAGCCCTGTGGTGGATGGTGTGGTGATCCCAGATGACCCTTTGGTGCTCCTGACCCAGGGGAAGGTTTCATCTGTGCCCTACCTTCTAGGTGTCAACAACCTGGAATTCAATTGGCTCTTGCCTTATATCATGAAGTTCCCGCTAAACCGGCAGGCGATGAGAAAGGAAACCATCACTAAGATGCTCTGGAGTACCCGCACCCTGTTGAATATCACCAAGGAGCAGGTACCACTTGTGGTGGAGGAGTACCTGGACAATGTCAATGAGCATGACTGGAAGATGCTACGAAACCGTATGATGGACATAGTTCAAGATGCCACTTTCGTGTATGCCACACTGCAGACTGCTCACTACCACCGAGATGCCGGCCTCCCTGTCTACCTGTATGAATTTGAGCACCACGCTCGTGGAATAATCGTCAAACCCCGCACTGATGGGGCAGACCATGGGGATGAGATGTACTTCCTCTTTGGGGGCCCCTTCGCCACAGGCCTTTCCATGGGTAAGGAGAAGGCACTTAGCCTCCAGATGATGAAATACTGGGCCAACTTTGCCCGCACAGGAAACCCCAATGATGGGAATCTGCCCTGCTGGCCACGCTACAACAAGGATGAAAAGTACCTGCAGCTGGATTTTACCACAAGAGTGGGCATGAAGCTCAAGGAGAAGAAGATGGCTTTTTGGATGAGTCTGTACCAGTCTCAAAGACCTGAGAAGCAGAGGCAATTCTAA MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDKFLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGKPNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQDVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLLTPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAWLRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASCPQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPVLAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAIHVVVLLLRGLSQKATEVPAGVLGPAGLDVRQHAGTVQVAALQRGLSVPERVRAGARARGSPAASDGLVPGRRLHRGRCFFVRGL*LGRPRESGAGVSAAQARHLRLPEHGRQPRARELGAAGPDGGSALGAGEHRSLRGRPRKCDPVRPVGGGHEHLRTDDVTPSLGSLPSGHFPEWHRVIQTFHH**PTESGQEGCPPGWMQPQQHTDPGKLPEGTIRDQGDACVQQDEIPPTELPERPGRDYLVHEPCGGWCGDPR*PFGAPDPGEGFICALPSRCQQPGIQLALALYHEVPAKPAGDEKGNHH*DALEYPHPVEYHQGAGTTCGGGVPGQCQ*A*LEDATKPYDGHSSRCHFRVCHTADCSLPPRCRPPCLPV*I*APRSWNNRQTPH*WGRPWG*DVLPLWGPLRHRPFHG*GEGT*PPDDEILGQLCPHRKPQ*WESALLATLQQG*KVPAAGFYHKSGHEAQGEEDGFLDESVPVSKT*EAEAIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29816 PRCP::INTS4 ENSG00000137509.12::ENSG00000149262.19 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 823 FALSE NA FALSE NA PRCP ENSG00000137509.12 protein_coding - - chr11:82822936-82970584:- chr11:82859977:- chr11:82533978-82681626:- chr11:82571019:- INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77961138:- chr11:77585464-77705761:- chr11:77672184:- chr11:82858835,chr11:82858839 chr11:77975435,chr11:77975436 NA NA chr11:82569877,chr11:82569881 chr11:77686481,chr11:77686482 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Peptidase_S28-PARTIAL|78-372~|6.4e-99^Peptidase_S37|78-226|5.7e-06^DUF2920|92-114|1.6^Peptidase_S9|165-216|2.1e-06^Hydrolase_4|168-232|2e-08^Abhydrolase_6|170-241|3.5e-07^DUF2920|173-226|3.7e-07^Abhydrolase_1|173-217|6.6e-06 MMS19_N|662-699|1.8^HEAT_EZ|826-845|6.3 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:4.83Mb] 84 53 84 53 ONLY_REF_SPLICE YES_LDAS 1.8076 GT 1.8323 AG 1.9656 ENST00000393399.6 1-372 ENST00000695102.1 622-3042 chr11|-|[2]82859977-82860117[0]|[2]82884823-82884885[0]|[2]82900235-82900402[0]<==>chr11|-|[2]77878949-77879127[1]|[0]77883832-77883952[0]|[2]77891319-77891462[0]|[2]77891681-77891840[2]|[1]77894290-77894349[2]|[1]77901421-77901551[0]|[2]77903540-77903620[0]|[2]77907717-77907810[2]|[1]77918821-77918978[0]|[2]77921340-77921473[1]|[0]77922356-77922471[2]|[1]77924750-77924892[0]|[2]77928342-77928547[1]|[0]77938651-77938825[0]|[2]77941180-77941251[0]|[2]77955942-77956062[2]|[1]77958746-77958834[0]|[2]77960341-77960391[0]|[2]77960953-77961138[0] atgggccgccgagccctcctgctcctgcttctgtcttttctggcgccctgggccaccatagccctccggccggccttaagggccctcggcagcctacacttgccaaccaaccccacatccctcccggctgtagccaagaactattcggttctctacttccaacagaaggcccttgctgctgggcagttgcacatatgtattatccaactaaatcattacaagactcctctggttgatcattttggatttaatactgtgaaaacttttaatcagcggtacctagtagctgataaatactggaagaaaaatggtggatcaatacttttctacactggtaatgaaggggacattatctggttttgtaataacacgCATCTGACAGATACGTCTCATGGTGTAAGAAATAAGTGCCTGCAGTTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAAAGATGCAGAAGGCCTAGCTGCCAGAGATGTCCAGAAGATTATAGGGGATTACTTCAGTGACCAAGACCCACGTGTCAGAACAGCAGCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAATTACACCAAACAATTTATAATCAGGCCTGTAAATTACTCTCTGATGACTATGAACAAGTGCGCAGTGCTGCAGTCCAGCTTATCTGGGTCGTCAGTCAGCTCTATCCTGAAAGCATTGTCCCAATTCCTTCTTCTAATGAAGAAATACGCTTAGTTGATGATGCGTTTGGCAAAATTTGTCACATGGTCAGTGATGGCTCTTGGGTGGTTCGTGTTCAGGCAGCAAAACTGTTGGGCTCTATGGAGCAAGTCAGTTCTCATTTCTTGGAGCAGACCCTTGACAAGAAGCTGATGTCAGATCTGAGGAGGAAACGTACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGAAAGTGGGGAGATGATGCTCCCAAGGAAGAAGTAGATACCGGGGCTGTGAACTTGATTGAGTCAGGAGCTTGTGGAGCTTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGTATTGCTGCTGTGGAGGCCCTCTGCATGTTGGCCCAGTCTTCACCCTCTTTTGCTGAGAAGTGCCTTGATTTCCTAGTTGACATGTTCAACGATGAAATTGAGGAAGTACGTCTGCAGTCTATACATACCATGAGAAAAATCTCTAACAACATCACCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGCTAGAGGATTCATCCAGAGATATTCGAGAGGCTCTTCATGAACTCTTATGCTGTACTAATGTTTCAACCAAAGAAGGGATTCATCTTGCATTGGTGGAGCTGCTGAAAAATTTAACCAAGTACCCTACTGATAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGAAGTCGGCATCCAACCCTGGTGCTTCCCTTGGTGCCAGAGCTTCTGAGCACCCACCCATTTTTTGACACAGCTGAACCAGACATGGATGATCCAGCTTATATTGCAGTTTTGGTACTTATTTTCAATGCTGCTAAAACCTGTCCAACAATGCCAGCATTGTTCTCAGATCACACCTTCAGGCACTATGCCTACCTCCGAGACAGTCTTTCTCATCTTGTTCCTGCCTTGAGGTTACCAGGTAGAAAACTGGTGTCATCAGCTGTTTCTCCCAGCATCATACCTCAAGAGGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGAGTGTATAGTCTTCAGCACTTGGACCCTCAGGGAGCCCAGGAGCTGCTGGAATTCACCATCAGGGATCTGCAAAGACTTGGAGAACTTCAATCTGAATTGGCAGGAGTAGCTGATTTCTCTGCCACCTATCTTCGCTGTCAACTACTTCTCATCAAGGCCTTGCAGGAAAAGTTGTGGAATGTAGCTGCCCCTTTGTATTTGAAGCAGAGTGATTTGGCCTCAGCAGCAGCGAAACAGATTATGGAAGAGACCTACAAAATGGAATTCATGTACAGTGGTGTGGAGAATAAGCAGGTGGTGATTATACATCACATGAGGCTGCAGGCCAAAGCTTTGCAACTTATAGTAACAGCACGAACTACACGAGGACTTGACCCCTTATTTGGGATGTGTGAAAAATTTTTACAGGAAGTAGACTTTTTTCAGAGGTATTTCATCGCTGATTTGCCCCACTTGCAGGACAGCTTTGTGGACAAACTCCTTGACCTTATGCCCCGACTCATGACATCCAAACCTGCAGAAGTGGTCAAAATTCTACAGACCATGCTGCGACAGAGTGCCTTTCTGCATCTCCCGCTTCCAGAGCAGATCCACAAAGCCTCAGCCACCATCATCGAGCCAGCGGGCGAGTCAGACAACCCTTTGCGGTTTACCTCTGGGTTGGTGGTTGCCCTGGATGTTGATGCAACCCTGGAGCATGTGCAGGATCCTCAGAACACTGTTAAGGTCCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATTCACCCCAAGCCTGCAGACTTCCGGAATCCTGGCCCAGGGCGGCACCGGCTCATCACTCAGGTTTATCTCTCCCACACCGCTTGGACAGAGGCATGCCAGGTGGAAGTGAGGCTGCTGCTGGCCTACAACTCCAGTGCTCGCATTCCAAAATGCCCCTGGATGGAGGGTGGTGAGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATTCCCTTCAGCAAGCCTGTAAAAGTTTATATAATGCCCAAACCTGCACGGCGCTAA MGRRALLLLLLSFLAPWATIALRPALRALGSLHLPTNPTSLPAVAKNYSVLYFQQKALAAGQLHICIIQLNHYKTPLVDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRLVDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELYSSGEFSSGRKWGDDAPKEEVDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDMFNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVELLKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCPTMPALFSDHTFRHYAYLRDSLSHLVPALRLPGRKLVSSAVSPSIIPQEDPSQQFLQQSLERVYSLQHLDPQGAQELLEFTIRDLQRLGELQSELAGVADFSATYLRCQLLLIKALQEKLWNVAAPLYLKQSDLASAAAKQIMEETYKMEFMYSGVENKQVVIIHHMRLQAKALQLIVTARTTRGLDPLFGMCEKFLQEVDFFQRYFIADLPHLQDSFVDKLLDLMPRLMTSKPAEVVKILQTMLRQSAFLHLPLPEQIHKASATIIEPAGESDNPLRFTSGLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADFRNPGPGRHRLITQVYLSHTAWTEACQVEVRLLLAYNSSARIPKCPWMEGGEMSPQVETSIEGTIPFSKPVKVYIMPKPARR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29817 RPS6KB2::KDM2A ENSG00000175634.15::ENSG00000173120.15 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RPS6KB2 ENSG00000175634.15 protein_coding + + chr11:67428460-67435401:+ chr11:67433042:+ chr11:67195931-67202872:+ chr11:67200513:+ KDM2A ENSG00000173120.15 protein_coding + + chr11:67119263-67258082:+ chr11:67149055:+ chr11:66886734-67025553:+ chr11:66916526:+ chr11:67433209,chr11:67433203 chr11:67145581,chr11:67145572 NA NA chr11:67200680,chr11:67200674 chr11:66913052,chr11:66913043 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023"];INTRACHROMOSOMAL[chr11:0.17Mb] 82 50 82 50 ONLY_REF_SPLICE YES_LDAS 1.7416 GT 1.9329 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-2 AGC RSK RSKp70 Q9UBS0 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29820 DDX23::ENSG00000257634 ENSG00000174243.11::ENSG00000257634.1 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DDX23 ENSG00000174243.11 protein_coding - - chr12:48829756-48852842:- chr12:48834394:- chr12:49223539-49246625:- chr12:49228177:- ENSG00000257634 ENSG00000257634.1 lncRNA + + chr12:54682973-54687434:+ chr12:54685069:+ chr12:55076757-55081218:+ chr12:55078853:+ chr12:48834323,chr12:48834340 chr12:54683512,chr12:54683493 NA NA chr12:49228106,chr12:49228123 chr12:55077296,chr12:55077277 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 27 12 27 11.22 INCL_NON_REF_SPLICE YES_LDAS 0.5042 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29821 ENSG00000250764::GOLPH3 ENSG00000250764.1::ENSG00000113384.14 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 825 FALSE NA FALSE NA ENSG00000250764 ENSG00000250764.1 lncRNA - - chr5:32103445-32121941:- chr5:32106124:- chr5:32103551-32122047:- chr5:32106230:- GOLPH3 ENSG00000113384.14 protein_coding - - chr5:32124716-32174319:- chr5:32143880:- chr5:32124822-32174425:- chr5:32143986:- chr5:32106096,chr5:32106099,chr5:32106102 chr5:32167671,chr5:32167671,chr5:32167671 NA NA chr5:32106202,chr5:32106205,chr5:32106208 chr5:32167777,chr5:32167777,chr5:32167777 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 6 14 6 ONLY_REF_SPLICE YES_LDAS 0.2639 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Golgi Phosphoprotein 3 2 breast cancer, NSCLC, ovarian cancer epithelial amplification 29822 CLNS1A::TENM4 ENSG00000074201.9::ENSG00000149256.16 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 827 FALSE NA FALSE NA CLNS1A ENSG00000074201.9 protein_coding - - chr11:77514936-77637794:- chr11:77629763:- chr11:77225981-77348839:- chr11:77340808:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78712714:- chr11:78363874-79152074:- chr11:78423759:- chr11:77627052,chr11:77627105,chr11:77627050,chr11:77626775 chr11:78722229,chr11:78722625,chr11:78722230,chr11:78722097 NA NA chr11:77338097,chr11:77338150,chr11:77338095,chr11:77337820 chr11:78433274,chr11:78433670,chr11:78433275,chr11:78433142 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Voldacs|35-121|5.5e-17 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.02Mb] 13 19 13 17.2 ONLY_REF_SPLICE YES_LDAS 0.3984 GT 1.8892 AG 1.8323 ENST00000532069.5 1-262 ENST00000278550.12 3822-8310 chr11|-|[0]77629763-77629899[2]|[1]77637590-77637714[0]<==>chr11|-|[2]78658058-78658816[0]|[2]78661449-78661591[1]|[0]78668937-78670551[0]|[2]78672033-78672329[0]|[2]78676152-78676387[1]|[0]78688054-78688226[2]|[1]78701526-78702403[0]|[2]78708361-78708515[1]|[0]78712482-78712714[2] atgagcttcctcaaaagtttcccgccgcctgggccagcggaggggctcctgcggcagcagccagacactgaggctgtgctgaacgggaagggcctcggcactggtaccctttacatcgctgagagccgcctgtcttggttagatggctctggattaggattctcactggaataccccaccattagtttacatgcattatccagggaccgaagtgactgtctaggagagcatttgtatgttatggtgaatgccaaatttgaagTCACAGTCCAGCACACAAATACTACCTGGCCACAGACCCCATGAGTGGGGCCGTCTTCCTTTCTGACAGCAACAGCCGGCGGGTCTTTAAAATCAAGTCCACTGTGGTGGTGAAGGACCTTGTCAAGAACTCTGAGGTGGTTGCGGGGACAGGTGACCAGTGCCTCCCCTTTGATGACACTCGCTGCGGGGATGGTGGGAAGGCCACAGAAGCCACACTCACCAATCCCAGGGGCATTACAGTGGACAAGTTTGGGCTGATCTACTTCGTGGATGGCACCATGATCAGACGCATCGATCAGAATGGGATCATCTCCACCCTGCTCGGCTCTAATGATCTCACATCAGCCCGGCCACTCAGCTGTGATTCTGTCATGGATATTTCCCAGGTTCACCTGGAGTGGCCCACAGACTTAGCCATCAACCCAATGGACAACTCACTTTATGTCCTCGACAACAATGTGGTCCTGCAAATCTCTGAAAACCACCAGGTGCGCATTGTCGCCGGGAGGCCCATGCACTGCCAGGTCCCTGGCATTGACCACTTCCTGCTAAGCAAGGTGGCCATCCACGCAACCCTGGAGTCAGCCACCGCTTTGGCTGTTTCACACAATGGGGTCCTGTATATTGCTGAGACTGATGAGAAAAAGATCAACCGCATCAGGCAGGTCACCACTAGTGGAGAGATCTCACTCGTTGCTGGGGCCCCCAGTGGCTGTGACTGTAAAAATGATGCCAACTGTGATTGTTTTTCTGGAGACGATGGTTATGCCAAGGATGCAAAGTTAAATACCCCATCTTCCTTGGCTGTGTGTGCTGATGGGGAGCTCTACGTGGCCGACCTTGGGAACATCCGAATTCGGTTTATCCGGAAGAACAAGCCTTTCCTCAACACCCAGAACATGTATGAGCTGTCTTCACCAATTGACCAGGAGCTCTATCTGTTTGATACCACCGGCAAGCACCTGTACACCCAAAGCCTGCCCACAGGAGACTACCTGTACAACTTCACCTACACTGGGGACGGCGACATCACACTCATCACAGACAACAATGGCAACATGGTAAATGTCCGCCGAGACTCTACTGGGATGCCCCTCTGGCTGGTGGTCCCAGATGGCCAGGTGTACTGGGTGACCATGGGCACCAACAGTGCACTCAAGAGTGTGACCACACAAGGACACGAGTTGGCCATGATGACATACCATGGCAATTCCGGCCTTCTGGCAACCAAAAGCAATGAAAACGGATGGACAACATTTTATGAGTACGACAGCTTTGGCCGCCTGACAAATGTGACCTTCCCTACTGGCCAGGTGAGCAGTTTCCGAAGTGATACAGACAGTTCAGTGCATGTCCAGGTAGAGACCTCCAGCAAGGATGATGTCACCATAACCACCAACCTGTCTGCCTCAGGCGCCTTCTACACACTGCTGCAAGACCAAGTCCGGAACAGCTACTACATCGGGGCCGATGGCTCCTTGCGGCTGCTGCTGGCCAACGGCATGGAGGTGGCGCTGCAGACTGAGCCCCACTTGCTGGCTGGCACCGTCAACCCCACCGTGGGCAAGAGGAATGTCACGCTGCCCATCGACAACGGCCTCAACCTGGTGGAGTGGCGCCAGCGCAAAGAGCAGGCTCGGGGCCAGGTCACTGTCTTTGGGCGCCGGCTGCGGGTTCACAACCGAAATCTCCTATCTCTGGACTTTGATCGCGTAACACGCACAGAGAAGATCTATGATGACCACCGCAAGTTCACCCTTCGGATTCTGTACGACCAGGCGGGGCGGCCCAGCCTCTGGTCACCCAGCAGCAGGCTGAATGGTGTCAACGTGACATACTCCCCTGGGGGTTACATTGCTGGCATCCAGAGGGGCATCATGTCTGAAAGAATGGAATACGACCAGGCGGGCCGCATCACATCCAGGATCTTCGCTGATGGGAAGACATGGAGCTACACATACTTAGAGAAGTCCATGGTGCTGCTACTACACAGCCAGAGGCAGTATATCTTTGAGTTCGACAAGAATGACCGCCTCTCTTCTGTGACGATGCCCAACGTGGCGCGGCAGACACTAGAGACCATCCGCTCAGTGGGCTACTACAGAAACATCTATCAGCCCCCTGAGGGCAATGCCTCAGTCATACAGGACTTCACTGAGGATGGGCACCTCCTTCACACCTTCTACCTGGGCACTGGCCGCAGGGTGATATACAAGTATGGCAAACTGTCAAAGCTGGCAGAGACGCTCTATGACACCACCAAGGTCAGTTTCACCTATGACGAGACGGCAGGCATGCTGAAGACCATCAACCTACAGAATGAGGGCTTCACCTGCACCATCCGCTACCGTCAGATTGGGCCCCTGATTGACCGACAGATCTTCCGCTTCACTGAGGAAGGCATGGTCAACGCCCGTTTTGACTACAACTATGACAACAGCTTCCGGGTGACCAGCATGCAGGCTGTGATCAACGAGACCCCACTGCCCATTGATCTCTATCGCTATGATGATGTGTCAGGCAAGACAGAGCAGTTTGGGAAGTTTGGTGTCATTTACTATGACATTAACCAGATCATCACCACAGCTGTCATGACCCACACCAAGCATTTTGATGCATATGGCAGGATGAAGGAAGTGCAGTATGAGATCTTCCGCTCGCTCATGTACTGGATGACCGTCCAGTATGATAACATGGGGCGAGTAGTGAAGAAGGAGCTGAAGGTAGGACCCTACGCCAATACCACTCGCTACTCCTATGAGTATGATGCTGACGGCCAGCTGCAGACAGTCTCCATCAATGACAAGCCACTCTGGCGCTACAGCTACGACCTCAATGGGAACCTGCACTTACTGAGCCCTGGGAACAGTGCACGGCTCACACCACTACGGTATGACATCCGCGACCGCATCACTCGGCTGGGTGACGTGCAATACAAGATGGATGAGGATGGCTTCCTGAGGCAGCGGGGCGGTGATATCTTTGAGTACAACTCAGCTGGCCTGCTCATCAAGGCCTACAACCGGGCTGGCAGCTGGAGTGTCAGGTACCGCTACGATGGCCTGGGGCGGCGCGTGTCCAGCAAGAGCAGCCACAGCCACCACCTGCAGTTCTTCTATGCAGACCTGACCAACCCCACCAAGGTCACCCACCTGTACAACCACTCCAGCTCTGAGATCACCTCCCTCTACTACGACTTGCAAGGACACCTCTTTGCCATGGAGCTGAGCAGTGGTGATGAGTTTTACATAGCTTGTGACAACATCGGGACCCCTCTTGCTGTCTTTAGTGGAACAGGTTTGATGATCAAGCAAATCCTGTACACAGCCTATGGGGAGATCTACATGGATACCAACCCCAACTTTCAGATCATCATAGGCTACCATGGTGGCCTCTATGATCCACTCACCAAGCTTGTCCACATGGGCCGGCGAGATTATGATGTGCTGGCCGGACGCTGGACTAGCCCAGACCACGAGCTGTGGAAGCACCTTAGTAGCAGCAACGTCATGCCTTTTAATCTCTATATGTTCAAAAACAACAACCCCATCAGCAACTCCCAGGACATCAAGTGCTTCATGACAGATGTTAACAGCTGGCTGCTCACCTTTGGATTCCAGCTACACAACGTGATCCCTGGTTATCCCAAACCAGACATGGATGCCATGGAACCCTCCTACGAGCTCATCCACACACAGATGAAAACGCAGGAGTGGGACAACAGCAAGTCTATCCTCGGGGTACAGTGTGAAGTACAGAAGCAGCTCAAGGCCTTTGTCACCTTAGAACGGTTTGACCAGCTCTATGGCTCCACAATCACCAGCTGCCAGCAGGCTCCAAAGACCAAGAAGTTTGCATCCAGCGGCTCAGTCTTTGGCAAGGGGGTCAAGTTTGCCTTGAAGGATGGCCGAGTGACCACAGACATCATCAGTGTGGCCAATGAGGATGGGCGAAGGGTTGCTGCCATCTTGAACCATGCCCACTACCTAGAGAACCTGCACTTCACCATTGATGGGGTGGATACCCATTACTTTGTGAAACCAGGACCTTCAGAAGGTGACCTGGCCATCCTGGGCCTCAGTGGGGGGCGGCGAACCCTGGAGAATGGGGTCAACGTCACTGTGTCCCAGATCAACACAGTACTTAATGGCAGGACTAGACGCTACACAGACATCCAGCTCCAGTACGGGGCACTGTGCTTGAACACACGCTACGGGACAACGTTGGATGAGGAGAAGGCACGGGTCCTGGAGCTGGCCCGGCAGAGAGCCGTGCGCCAAGCGTGGGCCCGCGAGCAGCAGAGACTGCGGGAAGGGGAGGAAGGCCTGCGGGCCTGGACAGAGGGGGAGAAGCAGCAGGTGCTGAGCACAGGGCGGGTGCAAGGCTACGACGGCTTTTTCGTGATCTCTGTCGAGCAGTACCCAGAACTGTCAGACAGCGCCAACAACATCCACTTCATGAGACAGAGCGAGATGGGCCGGAGGTGA MSFLKSFPPPGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHALSRDRSDCLGEHLYVMVNAKFEVTVQHTNTTWPQTP*VGPSSFLTATAGGSLKSSPLWW*RTLSRTLRWLRGQVTSASPLMTLAAGMVGRPQKPHSPIPGALQWTSLG*STSWMAP*SDASIRMGSSPPCSALMISHQPGHSAVILSWIFPRFTWSGPQT*PSTQWTTHFMSSTTMWSCKSLKTTRCALSPGGPCTARSLALTTSC*ARWPSTQPWSQPPLWLFHTMGSCILLRLMRKRSTASGRSPLVERSHSLLGPPVAVTVKMMPTVIVFLETMVMPRMQS*IPHLPWLCVLMGSSTWPTLGTSEFGLSGRTSLSSTPRTCMSCLHQLTRSSICLIPPASTCTPKACPQETTCTTSPTLGTATSHSSQTTMATW*MSAETLLGCPSGWWSQMARCTG*PWAPTVHSRV*PHKDTSWP**HTMAIPAFWQPKAMKTDGQHFMSTTALAA*QM*PSLLAR*AVSEVIQTVQCMSR*RPPARMMSP*PPTCLPQAPSTHCCKTKSGTATTSGPMAPCGCCWPTAWRWRCRLSPTCWLAPSTPPWARGMSRCPSTTASTWWSGASAKSRLGARSLSLGAGCGFTTEISYLWTLIA*HAQRRSMMTTASSPFGFCTTRRGGPASGHPAAG*MVST*HTPLGVTLLASRGASCLKEWNTTRRAASHPGSSLMGRHGATHT*RSPWCCYYTARGSISLSSTRMTASLL*RCPTWRGRH*RPSAQWATTETSISPLRAMPQSYRTSLRMGTSFTPSTWALAAG*YTSMANCQSWQRRSMTPPRSVSPMTRRQAC*RPSTYRMRASPAPSATVRLGP*LTDRSSASLRKAWSTPVLTTTMTTASG*PACRL*STRPHCPLISIAMMMCQARQSSLGSLVSFTMTLTRSSPQLS*PTPSILMHMAG*RKCSMRSSARSCTG*PSSMITWGE**RRS*R*DPTPIPLATPMSMMLTASCRQSPSMTSHSGATATTSMGTCTY*ALGTVHGSHHYGMTSATASLGWVTCNTRWMRMAS*GSGAVISLSTTQLACSSRPTTGLAAGVSGTATMAWGGACPARAATATTCSSSMQT*PTPPRSPTCTTTPALRSPPSTTTCKDTSLPWS*AVVMSFT*LVTTSGPLLLSLVEQV**SSKSCTQPMGRSTWIPTPTFRSS*ATMVASMIHSPSLSTWAGEIMMCWPDAGLAQTTSCGSTLVAATSCLLISICSKTTTPSATPRTSSAS*QMLTAGCSPLDSSYTT*SLVIPNQTWMPWNPPTSSSTHR*KRRSGTTASLSSGYSVKYRSSSRPLSP*NGLTSSMAPQSPAASRLQRPRSLHPAAQSLARGSSLP*RMAE*PQTSSVWPMRMGEGLLPS*TMPTT*RTCTSPLMGWIPITL*NQDLQKVTWPSWASVGGGEPWRMGSTSLCPRSTQYLMAGLDATQTSSSSTGHCA*THATGQRWMRRRHGSWSWPGREPCAKRGPASSRDCGKGRKACGPGQRGRSSRC*AQGGCKATTAFS*SLSSSTQNCQTAPTTSTS*DRARWAGG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29824 RSF1::GAB2 ENSG00000048649.14::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 826 FALSE NA FALSE NA RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77700721:- chr11:77371054-77531915:- chr11:77411766:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WHIM1|97-142|8.3e-17^WSD|149-207|2.2e-06^PHD|637-651|1.6^PHD|894-938|2.9e-13^DZR|894-938|0.0027^DZR|928-944|0.018 PH-PARTIAL|~76-116|1.5e-24^PH_11-PARTIAL|~76-113|4.6e-10^PH_9-PARTIAL|~76-114|1.8e-05^PH_2-PARTIAL|~76-114|1.8e-05^PH_8-PARTIAL|~76-114|7.7e-05^PH_3|79-114|0.00017^PH_11|176-225|2.4^PH|183-221|1.7^PH|284-305|1.4^PH|558-577|3.4 ["RSF1:Oncogene"];["GAB2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.39Mb] 11 11 11 9.31 ONLY_REF_SPLICE YES_LDAS 0.2679 GT 1.8295 AG 1.8256 ENST00000308488.11 1-2508 ENST00000361507.5 76-2031 chr11|-|[2]77700721-77702495[1]|[0]77725545-77725699[2]|[1]77740731-77740936[0]|[2]77747036-77747128[0]|[2]77764598-77764689[1]|[0]77820528-77820714[0]<==>chr11|-|[2]78219272-78219415[0]|[2]78220319-78220444[0]|[2]78221677-78221779[2]|[1]78222105-78222195[1]|[0]78223412-78223676[0]|[2]78225108-78225202[1]|[0]78226465-78227051[2]|[1]78250157-78250400[1]|[0]78280601-78280901[0] atggcgacggcggcggcagcggcggcggtgatggctcctccgggctgcccgggttcgtgccccaacttcgccgtagtctgctccttcttggagcgctacgggccgctgctagacctgcctgagttgccgttccctgagctggagcgggtgctgcaggcgccgccgccggacgtcggcaacggagaagtaccaaaagaattggtggagctccatttgaagctgatgaggaaaattggcaaatctgttactgcagacagatgggaaaaatatttgatcaagatatgccaagagtttaacagtacctgggcatgggagatggagaagaagggctatcttgaaatgagtgttgaatgcaaactagcactcttaaagtacctctgtgagtgtcagtttgatgacaatctcaaattcaagaatattattaatgaggaggatgccgatactatgcgtctccagccaattggtcgagacaaagatggcctcatgtactggtaccaattggatcaagatcacaatgtcagaatgtacatagaagaacaagatgatcaagatggctcttcatggaaatgcattgtcagaaatcgaaacgagttggctgagactcttgcactcctgaaagcacaaattgatcctgtactattgaaaaactctagccaacaagacaactcttctcgggaaagtcccagcttagaggatgaggagactaaaaaagaggaagaaacacctaaacaagaggaacagaaagaaagtgaaaagatgaaaagtgaggagcagcctatggatttagaaaaccgttctacagccaatgttctagaagagactactgtgaaaaaagaaaaagaagatgaaaaggaacttgtgaaactgccagtcatagtgaagctagaaaaacctttgccagaaaatgaagaaaaaaagattatcaaagaagaaagtgattccttcaaggaaaatgtcaaacccattaaagttgaggtgaaggaatgtagagcagatcctaaagataccaaaagtagcatggagaagccagtggcacaggagcctgaaaggatcgaatttggtggcaatattaaatcttctcacgaaattactgagaaatctactgaagaaactgagaaacttaaaaatgaccagcaggccaagataccactaaaaaaacgagaaattaaactgagtgatgattttgacagtccagtcaagggacctttgtgtaaatcagttactccaacaaaagagtttttgaaagatgaaataaaacaagaggaagagacttgtaaaaggatctctacaatcactgctttgggtcatgaagggaaacagctggtaaatggagaagttagtgatgaaagggtagctccaaattttaagacagaaccaatagagacaaagttttatgagacaaaggaagagagctatagcccctctaaggacagaaatatcatcacggagggaaatggaacagagtccttaaattctgtcataacaagtatgaaaacaggtgagcttgagaaagaaacagcccctttgaggaaagatgcagatagttcaatatcagtcttagagatccatagtcaaaaagcacaaatagaggaacccgatcctccagaaatggaaacttctcttgattcttctgagatggcaaaagatctctcttcaaaaactgctttatcttccaccgagtcgtgtaccatgaaaggtgaagagaagtctcccaaaactaagaaggataagcgcccaccaatcctagaatgtcttgaaaagttagagaagtccaaaaagacttttcttgataaggacgcacaaagattgagtccaataccagaagaagttccaaagagtactctagagtcagaaaagcctggctctcctgaggcagctgaaacttctccaccatctaatatcattgaccactgtgagaaactagcctcagaaaaagaagtggtagaatgccagagtacaagtactgttggtggccagtctgtgaaaaaagtagacctagaaaccctaaaagaggattctgagttcacaaaggtagaaatggataatctggacaatgcccagacctctggcatagaggagccttctgagacaaagggttctatgcaaaaaagcaaattcaaatataagttggttcctgaagaagaaaccactgcctcagaaaatacagagataacctctgaaaggcagaaagagggcatcaaattaacaatcaggatatcaagtcggaaaaagaagcccgattctccccccaaagttctagaaccagaaaacaagcaagagaagacagaaaaggaagaggagaaaacaaatgtgggtcgtactttaagaagatctccaagaatatctagacccactgcaaaagtggctgagatcagagatcagaaagctgataaaaaaagaggggaaggagaagatgaggtggaagaagagtcaacagctttgcaaaaaactgacaaaaaggaaattttgaaaaaatcagagaaagatacaaattctaaagtaagcaagGCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTGGCTTCAATCAGGCTGAGGAGAGCACAGACTCCCTGAGAAATGTTTCCTCAGCCGGTCATGGCCCCCGCTCTTCTCCAGCTGAGCTCAGCAGCTCTAGCCAGCACCTTCTCCGAGAGCGCAAGTCCTCAGCCCCATCACACTCCAGCCAGCCAACTCTGTTCACGTTTGAACCCCCTGTGTCAAACCACATGCAGCCCACCTTGTCCACCAGCGCACCTCAGGAGTATCTCTACTTGCACCAGTGCATAAGCCGAAGAGCAGAAAATGCAAGGAGTGCCAGCTTCTCTCAGGGCACCAGAGCCTCTTTTCTCATGAGGAGTGACACAGCTGTACAAAAACTTGCCCAGGGCAATGGACACTGTGTCAACGGGATCAGTGGTCAAGTCCATGGCTTCTATAGCCTTCCCAAGCCGAGCCGGCACAATACAGAATTCAGAGACAGTACCTACGACCTCCCCCGCAGCCTGGCCTCCCATGGCCACACCAAGGGCAGCCTCACAGGCTCCGAGACAGATAATGAGGATGTGTACACCTTCAAGACGCCCAGCAACACCCTGTGCAGGGAGTTCGGGGACCTCCTGGTAGACAATATGGATGTTCCGGCCACCCCACTCTCAGCCTACCAGATCCCTAGGACATTCACTCTGGACAAAAACCACAATGCCATGACAGTGGCCACTCCTGGGGACTCAGCCATAGCTCCCCCACCCCGCCCCCCCAAGCCAAGTCAGGCAGAAACACCTCGATGGGGCAGTCCTCAGCAGAGACCGCCAATCAGTGAAAATAGCAGATCTGTCGCTGCCACCATCCCCAGACGCAACACCCTCCCTGCAATGGACAACAGCCGACTTCACCGAGCTTCTTCCTGTGAGACCTACGAGTACCCACAGCGTGGTGGAGAGAGTGCAGGCCGGTCTGCTGAATCCATGAGTGATGGAGTTGGCTCTTTCCTGCCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATGTGCCCATGAATCCAGGTTCTTCCACCCTGTTGGCCATGGAACGAGCAGGTGATAATTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCATCACTTTGACTCACTTGGCTACCCATCAACAACCCTTCCTGTGCACCGAGGCCCCAGCAGAGGAAGTGAGATTCAGCCACCCCCTGTCAACCGCAACCTCAAACCTGATCGGAAAGCAAAGCCAACACCACTTGACCTGAGGAACAACACCGTCATCGATGAACTCCCCTTCAAGTCACCTATCACCAAGTCTTGGTCTAGGGCCAACCACACCTTCAACTCCAGCTCCTCCCAGTACTGCCGCCCCATCTCCACCCAGAGCATCACCAGCACAGACTCAGGAGACAGCGAAGAGAACTATGTCCCTATGCAAAACCCAGTGTCTGCATCTCCCGTTCCCAGTGGCACGAACAGTCCTGCCCCTAAGAAGAGCACCGGCAGCGTTGATTATCTGGCCCTGGACTTCCAGCCGAGCTCCCCAAGCCCCCACCGCAAGCCATCTACTTCATCCGTCACCTCTGATGAGAAGGTGGACTACGTTCAGGTGGACAAGGAGAAGACCCAGGCCCTGCAGAACACCATGCAGGAGTGGACAGACGTGCGGCAGTCCTCAGAGCCTTCCAAGGGTGCCAAGCTGTGA MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKLPVIVKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSSMEKPVAQEPERIEFGGNIKSSHEITEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEIKQEEETCKRISTITALGHEGKQLVNGEVSDERVAPNFKTEPIETKFYETKEESYSPSKDRNIITEGNGTESLNSVITSMKTGELEKETAPLRKDADSSISVLEIHSQKAQIEEPDPPEMETSLDSSEMAKDLSSKTALSSTESCTMKGEEKSPKTKKDKRPPILECLEKLEKSKKTFLDKDAQRLSPIPEEVPKSTLESEKPGSPEAAETSPPSNIIDHCEKLASEKEVVECQSTSTVGGQSVKKVDLETLKEDSEFTKVEMDNLDNAQTSGIEEPSETKGSMQKSKFKYKLVPEEETTASENTEITSERQKEGIKLTIRISSRKKKPDSPPKVLEPENKQEKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSKAWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQICGFNQAEESTDSLRNVSSAGHGPRSSPAELSSSSQHLLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSAPQEYLYLHQCISRRAENARSASFSQGTRASFLMRSDTAVQKLAQGNGHCVNGISGQVHGFYSLPKPSRHNTEFRDSTYDLPRSLASHGHTKGSLTGSETDNEDVYTFKTPSNTLCREFGDLLVDNMDVPATPLSAYQIPRTFTLDKNHNAMTVATPGDSAIAPPPRPPKPSQAETPRWGSPQQRPPISENSRSVAATIPRRNTLPAMDNSRLHRASSCETYEYPQRGGESAGRSAESMSDGVGSFLPGKMIVGRSDSTNSEDNYVPMNPGSSTLLAMERAGDNSQSVYIPMSPGAHHFDSLGYPSTTLPVHRGPSRGSEIQPPPVNRNLKPDRKAKPTPLDLRNNTVIDELPFKSPITKSWSRANHTFNSSSSQYCRPISTQSITSTDSGDSEENYVPMQNPVSASPVPSGTNSPAPKKSTGSVDYLALDFQPSSPSPHRKPSTSSVTSDEKVDYVQVDKEKTQALQNTMQEWTDVRQSSEPSKGAKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29827 SBF2-AS1::ENSG00000286561 ENSG00000246273.9::ENSG00000286561.1 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SBF2-AS1 ENSG00000246273.9 lncRNA + + chr11:9758268-9811335:+ chr11:9758503:+ chr11:9779815-9832882:+ chr11:9780050:+ ENSG00000286561 ENSG00000286561.1 lncRNA + + chr11:9982753-10000290:+ chr11:9998686:+ chr11:10004300-10021837:+ chr11:10020233:+ chr11:9790830,chr11:9790830 chr11:9997578,chr11:9997575 NA NA chr11:9812377,chr11:9812377 chr11:10019125,chr11:10019122 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 2 7 1.4 ONLY_REF_SPLICE YES_LDAS 0.1109 GT 1.5656 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29828 TENM4::ACER3 ENSG00000149256.16::ENSG00000078124.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 828 FALSE NA FALSE NA TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79215808:- chr11:78363874-79152074:- chr11:78926853:- ACER3 ENSG00000078124.13 protein_coding + + chr11:76860859-77026797:+ chr11:76868120:+ chr11:76571903-76737841:+ chr11:76579164:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.63Mb] 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1452 GT 1.9329 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE TRUE hsa-mir-708,hsa-mir-5579 chr11:79402022-79402109:-,chr11:79422169-79422226:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29829 NARS2::GAB2 ENSG00000137513.11::ENSG00000033327.13 NCIH1435 SRR8615589 SRR8652141 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 830 FALSE NA FALSE NA NARS2 ENSG00000137513.11 protein_coding - - chr11:78435620-78575194:- chr11:78465876:- chr11:78146666-78286239:- chr11:78176922:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame tRNA_anti-codon|44-118|6.3e-14^tRNA-synt_2|138-502|6.8e-74^tRNA-synt_2d|233-282|5.9e-05^tRNA-synt_2b|235-317|3.4e-05^tRNA-synt_2d|474-497|0.00049 PH-PARTIAL|~76-116|1.5e-24^PH_11-PARTIAL|~76-113|4.6e-10^PH_9-PARTIAL|~76-114|1.8e-05^PH_2-PARTIAL|~76-114|1.8e-05^PH_8-PARTIAL|~76-114|7.7e-05^PH_3|79-114|0.00017^PH_11|176-225|2.4^PH|183-221|1.7^PH|284-305|1.4^PH|558-577|3.4 ["GAB2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.02Mb];NEIGHBORS[17613] 6 13 6 11.14 ONLY_REF_SPLICE YES_LDAS 0.2262 GT 1.7465 AG 1.8256 ENST00000695360.1 1-1287 ENST00000361507.5 76-2031 chr11|-|[2]78465876-78466013[0]|[2]78467412-78467534[0]|[2]78469247-78469313[2]|[1]78478438-78478475[0]|[2]78478585-78478683[0]|[2]78493063-78493195[2]|[1]78528842-78528936[0]|[2]78559539-78559619[0]|[2]78566132-78566272[0]|[2]78568632-78568752[2]|[1]78571335-78571444[0]|[2]78574348-78574488[0]<==>chr11|-|[2]78219272-78219415[0]|[2]78220319-78220444[0]|[2]78221677-78221779[2]|[1]78222105-78222195[1]|[0]78223412-78223676[0]|[2]78225108-78225202[1]|[0]78226465-78227051[2]|[1]78250157-78250400[1]|[0]78280601-78280901[0] atgctgggggtccgctgcctgctgcggtccgtgcgcttctgttcctccgcccccttccccaagcacaaaccttcagccaaactgagcgtgcgggacgctctcggggctcagaacgcgagtggggagcgcattaagatccagggatggattcgttctgtccgatcccagaaggaagtcttgttcctgcatgtaaatgatgggtcatctttggaaagccttcaggttgttgcagattcaggccttgacagtagagaattaaattttgggagttctgtggaagtacaagggcagctgataaaaagtccatccaaaaggcaaaatgtggaactgaaggcagaaaaaattaaagttattggaaattgtgatgccaaggatttccccatcaaatataaagagaggcatcctctggagtatctgcgacaatatcctcactttaggtgtaggactaacgttctgggttctatattgaggattcgcagtgaagcgacagctgctattcattctttctttaaggacagtggctttgtacatattcatactccaataatcacatccaatgactctgagggagctggagaactttttcaacttgaaccttcaggcaaacttaaggtacctgaggagaatttcttcaatgttcctgctttcttaactgtctcaggacaacttcatctagaagtgatgtcaggagcttttactcaagtgtttacctttggtccgaccttccgagctgaaaattctcagagccggaggcacctggcagagttttatatgatagaagcagagatttcttttgttgacagccttcaagatcttatgcaggttatagaggaactgttcaaggctacaacaatgatggttctctcaaaatgtcctgaagatgttgaactctgtcacaaattcatagcacctggccaaaaggacagattagaacatatgctaaaaaacaactttttaatcatttcttatactgaagcagtggagatcttaaagcaagcatcccagaacttcacctttaccccagagacaagatctctctgtgttgccgaggctggagtgcagtggtgcaaacatggctcactgcagattccacctcccaggctctcatcattcctcccaactcagtctcccaactatctgggactacagtggggtgctgacctacggactgaacatgaaaagtacctggtgaagcactgtggcaacatacctgtcttcgttattaattatccattaacactcaagcctttctacatgagggataatgaagatggccctcagcacacgGCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTGGCTTCAATCAGGCTGAGGAGAGCACAGACTCCCTGAGAAATGTTTCCTCAGCCGGTCATGGCCCCCGCTCTTCTCCAGCTGAGCTCAGCAGCTCTAGCCAGCACCTTCTCCGAGAGCGCAAGTCCTCAGCCCCATCACACTCCAGCCAGCCAACTCTGTTCACGTTTGAACCCCCTGTGTCAAACCACATGCAGCCCACCTTGTCCACCAGCGCACCTCAGGAGTATCTCTACTTGCACCAGTGCATAAGCCGAAGAGCAGAAAATGCAAGGAGTGCCAGCTTCTCTCAGGGCACCAGAGCCTCTTTTCTCATGAGGAGTGACACAGCTGTACAAAAACTTGCCCAGGGCAATGGACACTGTGTCAACGGGATCAGTGGTCAAGTCCATGGCTTCTATAGCCTTCCCAAGCCGAGCCGGCACAATACAGAATTCAGAGACAGTACCTACGACCTCCCCCGCAGCCTGGCCTCCCATGGCCACACCAAGGGCAGCCTCACAGGCTCCGAGACAGATAATGAGGATGTGTACACCTTCAAGACGCCCAGCAACACCCTGTGCAGGGAGTTCGGGGACCTCCTGGTAGACAATATGGATGTTCCGGCCACCCCACTCTCAGCCTACCAGATCCCTAGGACATTCACTCTGGACAAAAACCACAATGCCATGACAGTGGCCACTCCTGGGGACTCAGCCATAGCTCCCCCACCCCGCCCCCCCAAGCCAAGTCAGGCAGAAACACCTCGATGGGGCAGTCCTCAGCAGAGACCGCCAATCAGTGAAAATAGCAGATCTGTCGCTGCCACCATCCCCAGACGCAACACCCTCCCTGCAATGGACAACAGCCGACTTCACCGAGCTTCTTCCTGTGAGACCTACGAGTACCCACAGCGTGGTGGAGAGAGTGCAGGCCGGTCTGCTGAATCCATGAGTGATGGAGTTGGCTCTTTCCTGCCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATGTGCCCATGAATCCAGGTTCTTCCACCCTGTTGGCCATGGAACGAGCAGGTGATAATTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCATCACTTTGACTCACTTGGCTACCCATCAACAACCCTTCCTGTGCACCGAGGCCCCAGCAGAGGAAGTGAGATTCAGCCACCCCCTGTCAACCGCAACCTCAAACCTGATCGGAAAGCAAAGCCAACACCACTTGACCTGAGGAACAACACCGTCATCGATGAACTCCCCTTCAAGTCACCTATCACCAAGTCTTGGTCTAGGGCCAACCACACCTTCAACTCCAGCTCCTCCCAGTACTGCCGCCCCATCTCCACCCAGAGCATCACCAGCACAGACTCAGGAGACAGCGAAGAGAACTATGTCCCTATGCAAAACCCAGTGTCTGCATCTCCCGTTCCCAGTGGCACGAACAGTCCTGCCCCTAAGAAGAGCACCGGCAGCGTTGATTATCTGGCCCTGGACTTCCAGCCGAGCTCCCCAAGCCCCCACCGCAAGCCATCTACTTCATCCGTCACCTCTGATGAGAAGGTGGACTACGTTCAGGTGGACAAGGAGAAGACCCAGGCCCTGCAGAACACCATGCAGGAGTGGACAGACGTGCGGCAGTCCTCAGAGCCTTCCAAGGGTGCCAAGCTGTGA MLGVRCLLRSVRFCSSAPFPKHKPSAKLSVRDALGAQNASGERIKIQGWIRSVRSQKEVLFLHVNDGSSLESLQVVADSGLDSRELNFGSSVEVQGQLIKSPSKRQNVELKAEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVLGSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVDSLQDLMQVIEELFKATTMMVLSKCPEDVELCHKFIAPGQKDRLEHMLKNNFLIISYTEAVEILKQASQNFTFTPETRSLCVAEAGVQWCKHGSLQIPPPRLSSFLPTQSPNYLGLQWGADLRTEHEKYLVKHCGNIPVFVINYPLTLKPFYMRDNEDGPQHTAWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQICGFNQAEESTDSLRNVSSAGHGPRSSPAELSSSSQHLLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSAPQEYLYLHQCISRRAENARSASFSQGTRASFLMRSDTAVQKLAQGNGHCVNGISGQVHGFYSLPKPSRHNTEFRDSTYDLPRSLASHGHTKGSLTGSETDNEDVYTFKTPSNTLCREFGDLLVDNMDVPATPLSAYQIPRTFTLDKNHNAMTVATPGDSAIAPPPRPPKPSQAETPRWGSPQQRPPISENSRSVAATIPRRNTLPAMDNSRLHRASSCETYEYPQRGGESAGRSAESMSDGVGSFLPGKMIVGRSDSTNSEDNYVPMNPGSSTLLAMERAGDNSQSVYIPMSPGAHHFDSLGYPSTTLPVHRGPSRGSEIQPPPVNRNLKPDRKAKPTPLDLRNNTVIDELPFKSPITKSWSRANHTFNSSSSQYCRPISTQSITSTDSGDSEENYVPMQNPVSASPVPSGTNSPAPKKSTGSVDYLALDFQPSSPSPHRKPSTSSVTSDEKVDYVQVDKEKTQALQNTMQEWTDVRQSSEPSKGAKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29839 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75621625:+ chr6:76311225-76427997:+ chr6:76331341:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr6:71.12Mb] 56 27 56 17.09 ONLY_REF_SPLICE YES_LDAS 0.661 GT 1.5546 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29840 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75602576:+ chr6:76311225-76427997:+ chr6:76312292:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr6:71.12Mb] 42 15 42 4.98 ONLY_REF_SPLICE YES_LDAS 0.4248 GT 1.8295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29842 MSI2::MYT1 ENSG00000153944.12::ENSG00000196132.14 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ MYT1 ENSG00000196132.14 protein_coding + + chr20:64102394-64242253:+ chr20:64151697:+ chr20:62733747-62873606:+ chr20:62783050:+ chr17:57373820,chr17:57374226,chr17:57373818 chr20:64144859,chr20:64144886,chr20:64144854 NA NA chr17:55451181,chr17:55451587,chr17:55451179 chr20:62776212,chr20:62776239,chr20:62776207 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MSI2:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 29 10 29 10 ONLY_REF_SPLICE YES_LDAS 0.3527 GT 1.5656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29844 PTPRG::UTRN ENSG00000144724.20::ENSG00000152818.20 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 835 FALSE NA FALSE NA PTPRG ENSG00000144724.20 protein_coding + + chr3:61561569-62297609:+ chr3:61748982:+ chr3:61547243-62283284:+ chr3:61734656:+ UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144461197:+ chr6:144606471-145174170:+ chr6:144782333:+ chr3:61752691,chr3:61752687 chr6:144461097,chr6:144461090 NA NA chr3:61738365,chr3:61738361 chr6:144782233,chr6:144782226 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Carb_anhydrase-PARTIAL|67-190~|4.8e-79^PTPlike_phytase-PARTIAL|163-190~|1.9 Spectrin-PARTIAL|~2708-2797|1.3e-09^WW|2817-2843|1.5e-08^DsrE|2843-2889|0.18^EF-hand_2|2846-2964|7.8e-45^Tsi6|2936-2962|6.7^EF-hand_3|2968-3059|1.4e-37^ZZ|3065-3108|8.9e-20^Spectrin|3325-3354|1.6^Nup54_57_C|3334-3342|0.096^Tsi6|3340-3359|3.4^Spectrin|3393-3419|8.9 ["PTPRG:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr6] 23 8 23 7.71 ONLY_REF_SPLICE YES_LDAS 0.2777 GT 1.9329 AG 1.8062 ENST00000474889.6 1-190 ENST00000367545.8 2708-10302 chr3|+|[0]61562288-61562372[0]|[1]61748878-61748982[0]<==>chr6|+|[1]144461197-144461342[2]|[0]144462654-144462866[2]|[0]144473720-144473833[2]|[0]144474604-144474759[2]|[0]144479812-144479982[2]|[0]144482209-144482388[2]|[0]144485385-144485519[2]|[0]144487548-144487697[2]|[0]144488673-144488834[2]|[0]144490071-144490199[2]|[0]144490929-144491102[2]|[0]144493301-144493456[2]|[0]144499257-144499427[2]|[0]144510944-144511123[2]|[0]144513909-144514037[2]|[0]144514650-144514820[2]|[0]144516229-144516387[2]|[0]144516811-144516948[2]|[0]144521980-144522171[2]|[0]144523016-144523188[1]|[2]144531052-144531202[2]|[0]144533085-144533260[1]|[2]144537582-144537717[2]|[0]144539294-144539443[2]|[0]144542795-144542870[0]|[1]144548640-144548854[2]|[0]144550965-144551082[0]|[1]144554688-144554893[2]|[0]144557157-144557311[1]|[2]144577099-144577288[2]|[0]144678406-144678578[1]|[2]144700087-144700243[2]|[0]144730357-144730486[0]|[1]144748246-144748514[2]|[0]144751806-144751952[2]|[0]144754720-144754798[0]|[1]144757929-144757989[1]|[2]144771907-144771968[0]|[1]144774290-144774364[0]|[1]144781922-144782123[1]|[2]144789194-144789279[0]|[1]144793834-144793991[2]|[0]144797824-144797990[1]|[2]144803036-144803147[2]|[0]144820882-144821018[1]|[2]144827348-144827386[1]|[2]144827611-144827676[1]|[2]144828790-144828855[1]|[2]144835780-144835938[1]|[2]144836301-144836541[2]|[0]144839173-144839284[0]|[1]144840740-144840832[0]|[1]144846805-144846827[2]|[0]144850989-144850997[2] atgcggaggttactggaaccgtgttggtggattttgttcctgaaaatcaccagttccgtgctccattatgtcgtgtgcttccccgcgttgacagaaggctacgttggggccctgcacgagaatagacacggcagcgcagtgcagatccgcaggcgcaaggcttcaggcgacccgtactgggcctactctgAACTGAAGGGCCAACCTGGACATGCATATCTGGAAACATTGAAAACACTGAAAGATGTGCTAAATGATTCAGAAAATAAGGCCCAGGTGTCTCTGAATGTCCTTAATGATCTTGCCAAGGTGGAGAAGGCCCTGCAAGAAAAAAAGACCCTTGATGAAATCCTTGAGAATCAGAAACCTGCATTACATAAACTTGCAGAAGAAACAAAGGCTCTGGAGAAAAATGTTCATCCTGATGTAGAAAAATTATATAAGCAAGAATTTGATGATGTGCAAGGAAAGTGGAACAAGCTAAAGGTCTTGGTTTCCAAAGATCTACATTTGCTTGAGGAAATTGCTCTCACACTCAGAGCTTTTGAGGCCGATTCAACAGTCATTGAGAAGTGGATGGATGGCGTGAAAGACTTCTTAATGAAACAGCAGGCTGCCCAAGGAGACGACGCAGGTCTACAGAGGCAGTTAGACCAGTGCTCTGCATTTGTTAATGAAATAGAAACAATTGAATCATCTCTGAAAAACATGAAGGAAATAGAGACTAATCTTCGAAGTGGTCCAGTTGCTGGAATAAAAACTTGGGTGCAGACAAGACTAGGTGACTACCAAACTCAACTGGAGAAACTTAGCAAGGAGATCGCTACTCAAAAAAGTAGGTTGTCTGAAAGTCAAGAAAAAGCTGCGAACCTGAAGAAAGACTTGGCAGAGATGCAGGAATGGATGACCCAGGCCGAGGAAGAATATTTGGAGCGGGATTTTGAGTACAAGTCACCAGAAGAGCTTGAGAGTGCTGTGGAAGAGATGAAGAGGGCAAAAGAGGATGTGTTGCAGAAGGAGGTGAGAGTGAAGATTCTCAAGGACAACATCAAGTTATTAGCTGCCAAGGTGCCCTCTGGTGGCCAGGAGTTGACGTCTGAGCTGAATGTTGTGCTGGAGAATTACCAACTTCTTTGTAATAGAATTCGAGGAAAGTGCCACACGCTAGAGGAGGTCTGGTCTTGTTGGATTGAACTGCTTCACTATTTGGATCTTGAAACTACCTGGTTAAACACTTTGGAAGAGCGGATGAAGAGCACAGAGGTCCTGCCTGAGAAGACGGATGCTGTCAACGAAGCCCTGGAGTCTCTGGAATCTGTTCTGCGCCACCCGGCAGATAATCGCACCCAGATTCGAGAGCTTGGCCAGACTCTGATTGATGGGGGGATCCTGGATGATATAATCAGTGAGAAACTGGAGGCTTTCAACAGCCGATATGAAGATCTAAGTCACCTGGCAGAGAGCAAGCAGATTTCTTTGGAAAAGCAACTCCAGGTGCTGCGGGAAACTGACCAGATGCTTCAAGTCTTGCAAGAGAGCTTGGGGGAGCTGGACAAACAGCTCACCACATACCTGACTGACAGGATAGATGCTTTCCAAGTTCCACAGGAAGCTCAGAAAATCCAAGCAGAGATCTCAGCCCATGAGCTAACCCTAGAGGAGTTGAGAAGAAATATGCGTTCTCAGCCCCTGACCTCCCCAGAGAGTAGGACTGCCAGAGGAGGAAGTCAGATGGATGTGCTACAGAGGAAACTCCGAGAGGTGTCCACAAAGTTCCAGCTTTTCCAGAAGCCAGCTAACTTCGAGCAGCGCATGCTGGACTGCAAGCGTGTGCTGGATGGCGTGAAAGCAGAACTTCACGTTCTGGATGTGAAGGACGTAGACCCTGACGTCATACAGACGCACCTGGACAAGTGTATGAAACTGTATAAAACTTTGAGTGAAGTCAAACTTGAAGTGGAAACTGTGATTAAAACAGGAAGACATATTGTCCAGAAACAGCAAACGGACAACCCAAAAGGGATGGATGAGCAGCTGACTTCCCTGAAGGTTCTTTACAATGACCTGGGCGCACAGGTGACAGAAGGAAAACAGGATCTGGAAAGAGCATCACAGTTGGCCCGGAAAATGAAGAAAGAGGCTGCTTCTCTCTCTGAATGGCTTTCTGCTACTGAAACTGAATTGGTACAGAAGTCCACTTCAGAAGGTCTGCTTGGTGACTTGGATACAGAAATTTCCTGGGCTAAAAATGTTCTGAAGGATCTGGAAAAGAGAAAAGCTGATTTAAATACCATCACAGAGAGTAGTGCTGCCCTGCAAAACTTGATTGAGGGCAGTGAGCCTATTTTAGAAGAGAGGCTCTGCGTCCTTAACGCTGGGTGGAGCCGAGTTCGTACCTGGACTGAAGATTGGTGCAATACCTTGATGAACCATCAGAACCAGCTAGAAATATTTGATGGGAACGTGGCTCACATAAGTACCTGGCTTTATCAAGCTGAAGCTCTATTGGATGAAATTGAAAAGAAACCAACAAGTAAACAGGAAGAAATTGTGAAGCGTTTAGTATCTGAGCTGGATGATGCCAACCTCCAGGTTGAAAATGTCCGCGATCAAGCCCTTATTTTGATGAATGCCCGTGGAAGCTCAAGCAGGGAGCTTGTAGAACCAAAGTTAGCTGAGCTGAATAGGAACTTTGAAAAGGTGTCTCAACATATCAAAAGTGCCAAATTGCTAATTGCTCAGGAACCATTATACCAATGTTTGGTCACCACTGAAACATTTGAAACTGGTGTGCCTTTCTCTGACTTGGAAAAATTAGAAAATGACATAGAAAATATGTTAAAATTTGTGGAAAAACACTTGGAATCCAGTGATGAAGATGAAAAGATGGATGAGGAGAGTGCCCAGATTGAGGAAGTTCTACAAAGAGGAGAAGAAATGTTACATCAACCTATGGAAGATAATAAAAAAGAAAAGATCCGTTTGCAATTATTACTTTTGCATACTAGATACAACAAAATTAAGGCAATCCCTATTCAACAGAGGAAAATGGGTCAACTTGCTTCTGGAATTAGATCATCACTTCTTCCTACAGATTATCTGGTTGAAATTAACAAAATTTTACTTTGCATGGATGATGTTGAATTATCGCTTAATGTTCCAGAGCTCAACACTGCTATTTACGAAGACTTCTCTTTTCAGGAAGACTCTCTGAAGAATATCAAAGACCAACTGGACAAACTTGGAGAGCAGATTGCAGTCATTCATGAAAAACAGCCAGATGTCATCCTTGAAGCCTCTGGACCTGAAGCCATTCAGATCAGAGATACACTTACTCAGCTGAATGCAAAATGGGACAGAATTAATAGAATGTACAGTGATCGGAAAGGTTGTTTTGACAGGGCAATGGAAGAATGGAGACAGTTCCATTGTGACCTTAATGACCTCACACAGTGGATAACAGAGGCTGAAGAATTACTGGTTGATACCTGTGCTCCAGGTGGCAGCCTGGACTTAGAGAAAGCCAGGATACATCAGCAGGAACTTGAGGTGGGCATCAGCAGCCACCAGCCCAGTTTTGCAGCACTAAACCGAACTGGGGATGGGATTGTGCAGAAACTCTCCCAGGCAGATGGAAGCTTCTTGAAAGAAAAACTGGCAGGTTTAAACCAACGCTGGGATGCAATTGTTGCAGAAGTGAAGGATAGGCAGCCAAGGCTAAAAGGAGAAAGTAAGCAGGTGATGAAGTACAGGCATCAGCTAGATGAGATTATCTGTTGGTTAACAAAGGCTGAGCATGCTATGCAAAAGAGATCAACCACCGAATTGGGAGAAAACCTGCAAGAATTAAGAGACTTAACTCAAGAAATGGAAGTACATGCTGAAAAACTCAAATGGCTGAATAGAACTGAATTGGAGATGCTTTCAGATAAAAGTCTGAGTTTACCTGAAAGGGATAAAATTTCAGAAAGCTTAAGGACTGTAAATATGACATGGAATAAGATTTGCAGAGAGGTGCCTACCACCCTGAAGGAATGCATCCAGGAGCCCAGTTCTGTTTCACAGACAAGGATTGCTGCTCATCCTAATGTCCAAAAGGTGGTGCTAGTATCATCTGCGTCAGATATTCCTGTTCAGTCTCATCGTACTTCGGAAATTTCAATTCCTGCTGATCTTGATAAAACTATAACAGAACTAGCCGACTGGCTGGTATTAATCGACCAGATGCTGAAGTCCAACATTGTCACTGTTGGGGATGTAGAAGAGATCAATAAGACCGTTTCCCGAATGAAAATTACAAAGGCTGACTTAGAACAGCGCCATCCTCAGCTGGATTATGTTTTTACATTGGCACAGAATTTGAAAAATAAAGCTTCCAGTTCAGATATGAGAACAGCAATTACAGAAAAATTGGAAAGGGTCAAGAACCAGTGGGATGGCACCCAGCATGGCGTTGAGCTAAGACAGCAGCAGCTTGAGGACATGATTATTGACAGTCTTCAGTGGGATGACCATAGGGAGGAGACTGAAGAACTGATGAGAAAATATGAGGCTCGACTCTATATTCTTCAGCAAGCCCGACGGGATCCACTCACCAAACAAATTTCTGATAACCAAATACTGCTTCAAGAACTGGGTCCTGGAGATGGTATCGTCATGGCGTTCGATAACGTCCTGCAGAAACTCCTGGAGGAATATGGGAGTGATGACACAAGGAATGTGAAAGAAACCACAGAGTACTTAAAAACATCATGGATCAATCTCAAACAAAGTATTGCTGACAGACAGAACGCCTTGGAGGCTGAGTGGAGGACGGTGCAGGCCTCTCGCAGAGATCTGGAAAACTTCCTGAAGTGGATCCAAGAAGCAGAGACCACAGTGAATGTGCTTGTGGATGCCTCTCATCGGGAGAATGCTCTTCAGGATAGTATCTTGGCCAGGGAACTCAAACAGCAGATGCAGGACATCCAGGCAGAAATTGATGCCCACAATGACATATTTAAAAGCATTGACGGAAACAGGCAGAAGATGGTAAAAGCTTTGGGAAATTCTGAAGAGGCTACTATGCTTCAACATCGACTGGATGATATGAACCAAAGATGGAATGACTTAAAAGCAAAATCTGCTAGCATCAGGGCCCATTTGGAGGCCAGCGCTGAGAAGTGGAACAGGTTGCTGATGTCCTTAGAAGAACTGATCAAATGGCTGAATATGAAAGATGAAGAGCTTAAGAAACAAATGCCTATTGGAGGAGATGTTCCAGCCTTACAGCTCCAGTATGACCATTGTAAGGCCCTGAGACGGGAGTTAAAGGAGAAAGAATATTCTGTCCTGAATGCTGTCGACCAGGCCCGAGTTTTCTTGGCTGATCAGCCAATTGAGGCCCCTGAAGAGCCAAGAAGAAACCTACAATCAAAAACAGAATTAACTCCTGAGGAGAGAGCCCAAAAGATTGCCAAAGCCATGCGCAAACAGTCTTCTGAAGTCAAAGAAAAATGGGAAAGTCTAAATGCTGTAACTAGCAATTGGCAAAAGCAAGTGGACAAGGCATTGGAGAAACTCAGAGACCTGCAGGGAGCTATGGATGACCTGGACGCTGACATGAAGGAGGCAGAGTCCGTGCGGAATGGCTGGAAGCCCGTGGGAGACTTACTCATTGACTCGCTGCAGGATCACATTGAAAAAATCATGGCATTTAGAGAAGAAATTGCACCAATCAACTTTAAAGTTAAAACGGTGAATGATTTATCCAGTCAGCTGTCTCCACTTGACCTGCATCCCTCTCTAAAGATGTCTCGCCAGCTAGATGACCTTAATATGCGATGGAAACTTTTACAGGTTTCTGTGGATGATCGCCTTAAACAGCTTCAGGAAGCCCACAGAGATTTTGGACCATCCTCTCAGCATTTTCTCTCTACGTCAGTCCAGCTGCCGTGGCAAAGATCCATTTCACATAATAAAGTGCCCTATTACATCAACCATCAAACACAGACCACCTGTTGGGACCATCCTAAAATGACCGAACTCTTTCAATCCCTTGCTGACCTGAATAATGTACGTTTTTCTGCCTACCGTACAGCAATCAAAATCCGAAGACTACAAAAAGCACTATGTTTGGATCTCTTAGAGTTGAGTACAACAAATGAAATTTTCAAACAGCACAAGTTGAACCAAAATGACCAGCTCCTCAGTGTTCCAGATGTCATCAACTGTCTGACAACAACTTATGATGGACTTGAGCAAATGCATAAGGACCTGGTCAACGTTCCACTCTGTGTTGATATGTGTCTCAATTGGTTGCTCAATGTCTATGACACGGGTCGAACTGGAAAAATTAGAGTGCAGAGTCTGAAGATTGGATTAATGTCTCTCTCCAAAGGTCTCTTGGAAGAAAAATACAGATATCTCTTTAAGGAAGTTGCAGGGCCAACAGAAATGTGTGACCAGAGGCAGCTGGGCCTGTTACTTCATGATGCCATCCAGATCCCCCGGCAGCTAGGTGAAGTAGCAGCTTTTGGAGGCAGTAATATTGAGCCTAGTGTTCGCAGCTGCTTCCAACAGAATAACAATAAACCAGAAATAAGTGTGAAAGAGTTTATAGATTGGATGCATTTGGAACCACAGTCCATGGTTTGGCTCCCAGTTTTACATCGAGTGGCAGCAGCGGAGACTGCAAAACATCAGGCCAAATGCAACATCTGTAAAGAATGTCCAATTGTCGGGTTCAGGTATAGAAGCCTTAAGCATTTTAACTATGATGTCTGCCAGAGTTGTTTCTTTTCGGGTCGAACAGCAAAAGGTCACAAATTACATTACCCAATGGTGGAATATTGTATACCTACAACATCTGGGGAAGATGTACGAGACTTCACAAAGGTACTTAAGAACAAGTTCAGGTCGAAGAAGTACTTTGCCAAACACCCTCGACTTGGTTACCTGCCTGTCCAGACAGTTCTTGAAGGTGACAACTTAGAGACTCCTATCACACTCATCAGTATGTGGCCAGAGCACTATGACCCCTCACAATCTCCTCAACTGTTTCATGATGACACCCATTCAAGAATAGAACAATATGCCACACGACTGGCCCAGATGGAAAGGACTAATGGGTCTTTTCTCACTGATAGCAGCTCCACCACAGGAAGTGTGGAAGACGAGCACGCCCTCATCCAGCAGTATTGCCAAACACTCGGAGGAGAGTCCCCAGTGAGCCAGCCGCAGAGCCCAGCTCAGATCCTGAAGTCAGTAGAGAGGGAAGAACGTGGAGAACTGGAGAGGATCATTGCTGACCTGGAGGAAGAACAAAGAAATCTACAGGTGGAGTATGAGCAGCTGAAGGACCAGCACCTCCGAAGGGGGCTCCCTGTCGGTTCACCGCCAGAGTCGATTATATCTCCCCATCACACGTCTGAGGATTCAGAACTTATAGCAGAAGCAAAACTCCTCAGGCAGCACAAAGGTCGGCTGGAGGCTAGGATGCAGATTTTAGAAGATCACAATAAACAGCTGGAGTCTCAGCTCCACCGCCTCCGACAGCTGCTGGAGCAGCCTGAATCTGATTCCCGAATCAATGGTGTTTCCCCATGGGCTTCTCCTCAGCATTCTGCACTGAGCTACTCGCTTGATCCAGATGCCTCCGGCCCACAGTTCCACCAGGCAGCGGGAGAGGACCTGCTGGCCCCACCGCACGACACCAGCACGGATCTCACGGAGGTCATGGAGCAGATTCACAGCACGTTTCCATCTTGCTGCCCAAATGTTCCCAGCAGGCCACAGGCAATGTGA MRRLLEPCWWILFLKITSSVLHYVVCFPALTEGYVGALHENRHGSAVQIRRRKASGDPYWAYSELKGQPGHAYLETLKTLKDVLNDSENKAQVSLNVLNDLAKVEKALQEKKTLDEILENQKPALHKLAEETKALEKNVHPDVEKLYKQEFDDVQGKWNKLKVLVSKDLHLLEEIALTLRAFEADSTVIEKWMDGVKDFLMKQQAAQGDDAGLQRQLDQCSAFVNEIETIESSLKNMKEIETNLRSGPVAGIKTWVQTRLGDYQTQLEKLSKEIATQKSRLSESQEKAANLKKDLAEMQEWMTQAEEEYLERDFEYKSPEELESAVEEMKRAKEDVLQKEVRVKILKDNIKLLAAKVPSGGQELTSELNVVLENYQLLCNRIRGKCHTLEEVWSCWIELLHYLDLETTWLNTLEERMKSTEVLPEKTDAVNEALESLESVLRHPADNRTQIRELGQTLIDGGILDDIISEKLEAFNSRYEDLSHLAESKQISLEKQLQVLRETDQMLQVLQESLGELDKQLTTYLTDRIDAFQVPQEAQKIQAEISAHELTLEELRRNMRSQPLTSPESRTARGGSQMDVLQRKLREVSTKFQLFQKPANFEQRMLDCKRVLDGVKAELHVLDVKDVDPDVIQTHLDKCMKLYKTLSEVKLEVETVIKTGRHIVQKQQTDNPKGMDEQLTSLKVLYNDLGAQVTEGKQDLERASQLARKMKKEAASLSEWLSATETELVQKSTSEGLLGDLDTEISWAKNVLKDLEKRKADLNTITESSAALQNLIEGSEPILEERLCVLNAGWSRVRTWTEDWCNTLMNHQNQLEIFDGNVAHISTWLYQAEALLDEIEKKPTSKQEEIVKRLVSELDDANLQVENVRDQALILMNARGSSSRELVEPKLAELNRNFEKVSQHIKSAKLLIAQEPLYQCLVTTETFETGVPFSDLEKLENDIENMLKFVEKHLESSDEDEKMDEESAQIEEVLQRGEEMLHQPMEDNKKEKIRLQLLLLHTRYNKIKAIPIQQRKMGQLASGIRSSLLPTDYLVEINKILLCMDDVELSLNVPELNTAIYEDFSFQEDSLKNIKDQLDKLGEQIAVIHEKQPDVILEASGPEAIQIRDTLTQLNAKWDRINRMYSDRKGCFDRAMEEWRQFHCDLNDLTQWITEAEELLVDTCAPGGSLDLEKARIHQQELEVGISSHQPSFAALNRTGDGIVQKLSQADGSFLKEKLAGLNQRWDAIVAEVKDRQPRLKGESKQVMKYRHQLDEIICWLTKAEHAMQKRSTTELGENLQELRDLTQEMEVHAEKLKWLNRTELEMLSDKSLSLPERDKISESLRTVNMTWNKICREVPTTLKECIQEPSSVSQTRIAAHPNVQKVVLVSSASDIPVQSHRTSEISIPADLDKTITELADWLVLIDQMLKSNIVTVGDVEEINKTVSRMKITKADLEQRHPQLDYVFTLAQNLKNKASSSDMRTAITEKLERVKNQWDGTQHGVELRQQQLEDMIIDSLQWDDHREETEELMRKYEARLYILQQARRDPLTKQISDNQILLQELGPGDGIVMAFDNVLQKLLEEYGSDDTRNVKETTEYLKTSWINLKQSIADRQNALEAEWRTVQASRRDLENFLKWIQEAETTVNVLVDASHRENALQDSILARELKQQMQDIQAEIDAHNDIFKSIDGNRQKMVKALGNSEEATMLQHRLDDMNQRWNDLKAKSASIRAHLEASAEKWNRLLMSLEELIKWLNMKDEELKKQMPIGGDVPALQLQYDHCKALRRELKEKEYSVLNAVDQARVFLADQPIEAPEEPRRNLQSKTELTPEERAQKIAKAMRKQSSEVKEKWESLNAVTSNWQKQVDKALEKLRDLQGAMDDLDADMKEAESVRNGWKPVGDLLIDSLQDHIEKIMAFREEIAPINFKVKTVNDLSSQLSPLDLHPSLKMSRQLDDLNMRWKLLQVSVDDRLKQLQEAHRDFGPSSQHFLSTSVQLPWQRSISHNKVPYYINHQTQTTCWDHPKMTELFQSLADLNNVRFSAYRTAIKIRRLQKALCLDLLELSTTNEIFKQHKLNQNDQLLSVPDVINCLTTTYDGLEQMHKDLVNVPLCVDMCLNWLLNVYDTGRTGKIRVQSLKIGLMSLSKGLLEEKYRYLFKEVAGPTEMCDQRQLGLLLHDAIQIPRQLGEVAAFGGSNIEPSVRSCFQQNNNKPEISVKEFIDWMHLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIVGFRYRSLKHFNYDVCQSCFFSGRTAKGHKLHYPMVEYCIPTTSGEDVRDFTKVLKNKFRSKKYFAKHPRLGYLPVQTVLEGDNLETPITLISMWPEHYDPSQSPQLFHDDTHSRIEQYATRLAQMERTNGSFLTDSSSTTGSVEDEHALIQQYCQTLGGESPVSQPQSPAQILKSVEREERGELERIIADLEEEQRNLQVEYEQLKDQHLRRGLPVGSPPESIISPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHRLRQLLEQPESDSRINGVSPWASPQHSALSYSLDPDASGPQFHQAAGEDLLAPPHDTSTDLTEVMEQIHSTFPSCCPNVPSRPQAM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29847 SENP6::STXBP5-AS1 ENSG00000112701.18::ENSG00000233452.9 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1460 TRUE 567 SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75622858:+ chr6:76311225-76427997:+ chr6:76332574:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146851331:- chr6:147145675-147525750:- chr6:147172467:- chr6:75623681,chr6:75624031,chr6:75623682 chr6:146859570,chr6:146859569,chr6:146859569 NA NA chr6:76333397,chr6:76333747,chr6:76333398 chr6:147180706,chr6:147180705,chr6:147180705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr6:71.12Mb] 15 28 15 5.88 ONLY_REF_SPLICE YES_LDAS 0.1889 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29850 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 837 TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32380290:+ chr2:32582091-32844638:+ chr2:32605358:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47839769:- chr2:48016455-48133637:- chr2:48066908:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BIR|289-359|2.3e-24 Beta_helix|331-485|2.1e-20^Beta_helix|357-387|0.012^zf-UBR|358-370|8^F-box|363-383|0.48^NosD|387-479|1.5e-09^Beta_helix|388-543|1.2e-30^CueP|423-443|0.92^NosD|499-660|4.8e-19^CueP|518-539|0.011^Beta_helix|527-673|8.2e-33^CueP|601-627|0.12^NosD|638-716|1e-11^Beta_helix|664-819|5.1e-38^NosD|664-832|1.5e-20^CueP|701-722|0.31^CueP|783-815|2.2^zf-UBR|848-894|8.2e-13 ["BIRC6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:15.17Mb] 13 16 13 14.78 ONLY_REF_SPLICE YES_LDAS 0.2513 GT 1.9219 AG 1.9086 ENST00000700518.1 1-645 ENST00000403359.8 233-2784 chr2|+|[0]32357162-32357486[0]|[1]32377588-32377769[2]|[0]32380153-32380290[2]<==>chr2|-|[2]47808118-47808247[2]|[1]47808329-47808427[2]|[1]47809158-47809266[1]|[0]47809600-47809707[1]|[0]47810316-47810426[1]|[0]47813234-47813377[1]|[0]47813791-47813867[2]|[1]47818779-47818864[0]|[2]47818956-47819078[0]|[2]47820362-47820456[1]|[0]47822218-47822303[2]|[1]47823143-47823360[0]|[2]47832349-47832486[0]|[2]47832572-47832678[1]|[0]47832769-47832880[0]|[2]47832964-47833070[1]|[0]47834579-47834711[0]|[2]47834788-47834871[0]|[2]47835872-47836001[2]|[1]47838859-47839003[1]|[0]47839419-47839500[0]|[2]47839642-47839769[1] atggtgactggtggtggtgctgcacctcccgggactgtcactgagccgcttcccagtgtgattgtgctgagcgcaggccggaagatggcggctgcggctgcggcggcctcgggccccggctgctcctcggcggcgggggcgggggcggccggggtctcagagtggctggtgctgcgggacggctgcatgcactgcgacgccgacgggctgcacagcctgtcctaccaccctgcgctcaacgccatcctggccgtcactagccgcgggaccatcaaagtcatcgacggcacctcgggggccacactgcaggcctccgcgctcagtgctaaaccaggtggacaggtgaaatgtcagtatatctctgctgtggataaagttatatttgtggatgattatgcagtagggtgtaggaaggaccttaatggaatcttgttgttagacactgctctgcaaactccagtttcaaagcaggatgatgtggttcagcttgaattacccgttacagaggcacagcagctcttatcagcatgtttagaaaaggtagatatttctagtacagagggttatgatttgttcatcacacagctcaaagatggtttaaaaaatacatctcatgagactgcagcaaaccacaaagttgctaagATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAGGGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCACAAGATCTATCAGCAGCACCTGCTGAACAGTATCTTCAGGAGAAACTGCCAGATGAAGTGGTTCTAAAAATCTTCTCTTACTTGCTGGAACAGGATCTTTGTAGAGCAGCTTGTGTATGTAAACGCTTCAGTGAACTTGCTAATGATCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATATACTCGCCCTATGATGCATCCTGAACCTGGAAAATTCTACCAGATTAATCCAGAAGAGTATGAACATCCAAATCCCTGGAAAGAGAGTTTCCAGCAGTTGTATAAAGGTGCACATGTAAAGCCAGGATTTGCTGAACATTTCTACAGTAACCCTGCAAGATATAAAGGAAGAGAAAATATGTTGTATTATGATACTATTGAAGATGCCCTTGGTGGGGTACAAGAGGCTCATTTTGATGGACTTATCTTTGTTCATTCTGGAATATATACTGATGAATGGATATATATTGAATCTCCAATCACCATGATTGGTGCAGCACCTGGGAAAGTGGCAGACAAAGTTATAATTGAAAACACTAGAGATTCAACCTTCGTTTTTATGGAAGGCTCTGAAGATGCTTATGTTGGATATATGACAATAAGGTTTAACCCTGATGACAAATCTGCACAACACCACAATGCACACCACTGCTTAGAGATTACAGTAAATTGTAGCCCTATTATTGATCACTGTATCATCCGAAGTACATGTACAGTTGGTTCTGCAGTATGTGTTAGTGGTCAAGGAGCATGTCCCACCATCAAGCACTGTAACATCAGTGACTGTGAAAATGTTGGACTATATATAACAGATCATGCACAGGGAATATATGAGGATAATGAAATTTCCAATAATGCGTTAGCTGGGATTTGGGTTAAAAATCATGGAAACCCAATTATTAGACGGAATCATATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCATGGCATGGGTTACTTTGAAAGTTGCAATATACACAGAAATAGGATAGCAGGCTTTGAAGTAAAAGCCTATGCTAACCCTACAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGAATATATGTCCATGAAAAAGGAAGAGGACAATTCATAGAGAATAAAATCTATGCAAACAACTTTGCAGGTGTATGGATTACCTCAAATAGTGACCCAACAATAAGGGGAAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGATGGACGAGGCCTTATTGAAGGAAATGACATTTATGGCAATGCATTAGCAGGAATTCAAATTAGGACAAACAGTTGTCCAATTGTTCGGCATAACAAAATTCATGATGGCCAGCATGGTGGGATTTATGTGCATGAAAAGGGACAAGGAGTAATAGAAGAGAATGAAGTTTATAGTAACACTCTAGCTGGAGTCTGGGTGACAACTGGCAGCACTCCAGTACTGAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTTTATGACAATGGACATGGAGTGCTAGAAGACAATGATATCTATAATCATATGTATTCAGGGGTTCAGATAAGGACTGGAAGCAACCCCAAAATTAGACGCAACAAAATCTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATTAAGACAGATAGTAATCCTACACTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAGCACTAATAGTCATCCAATCTTAAGGAAAAACAGAATATTTGATGGATTTGCCGCAGGTATTGAAATTACAAATCACGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACCGGTTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGCCAATGTTTATATAAAATATCAAGTTATACCAGCTATCCCATGCATGATTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTTATTAGACATGATAGGTTTTTCTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATTAGCTGGTGAGCCTACACATGATACAGATACACTATATGACTCTGCTCCACCTATAGAATCTAATACATTGCAGCACAACTGA MVTGGGAAPPGTVTEPLPSVIVLSAGRKMAAAAAAASGPGCSSAAGAGAAGVSEWLVLRDGCMHCDADGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSAKPGGQVKCQYISAVDKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSACLEKVDISSTEGYDLFITQLKDGLKNTSHETAANHKVAKMMMCLQIWLQKNQVLVHKIVHTNFVEKLFCRKEQRVPQRTVWRAPQLQLQKTLVIVQNVQECLENHKIYQQHLLNSIFRRNCQMKWF*KSSLTCWNRIFVEQLVYVNASVNLLMIQFCGNDYIWKYLNILAL*CILNLENSTRLIQKSMNIQIPGKRVSSSCIKVHM*SQDLLNISTVTLQDIKEEKICCIMILLKMPLVGYKRLILMDLSLFILEYILMNGYILNLQSP*LVQHLGKWQTKL*LKTLEIQPSFLWKALKMLMLDI*Q*GLTLMTNLHNTTMHTTA*RLQ*IVALLLITVSSEVHVQLVLQYVLVVKEHVPPSSTVTSVTVKMLDYI*QIMHREYMRIMKFPIMR*LGFGLKIMETQLLDGIIFIMDVMLVCSHLIMAWVTLKVAIYTEIG*QALK*KPMLTLQWFDVKFTMGRLEEYMSMKKEEDNS*RIKSMQTTLQVYGLPQIVTQQ*GEILYLMEIKEEFTSLVMDEALLKEMTFMAMH*QEFKLGQTVVQLFGITKFMMASMVGFMCMKRDKE**KRMKFIVTL*LESG*QLAALQY*EETGYTVASRLVFIFMTMDMEC*KTMISIIICIQGFR*GLEATPKLDATKSGEDRMVEF*FIILV*AV*KTMKYLTMQWLESGLRQIVILH*EEIKSMMEEMVASVYLMGVEVSLKKMIFSGMLKQVFSSALIVIQS*GKTEYLMDLPQVLKLQITQLQH*KAIRFLTTGLEAYF*HLVLM*Q*KITK**TIKMP*KRLLVEANVYIKYQVIPAIPCMISTDVILVTPQIEMPYV*TALRSAIRDMM*SLLDMIGFSVTVVLEHCLILVH*LVSLHMIQIHYMTLLHL*NLIHCSTT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 29851 TSC1::PRRC2B ENSG00000165699.15::ENSG00000288701.1 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE FALSE TRUE 840 FALSE NA FALSE NA TSC1 ENSG00000165699.15 protein_coding - - chr9:132891348-132946874:- chr9:132921363:- chr9:135766735-135822261:- chr9:135796750:- PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131459164:+ chr9:134249023-134375584:+ chr9:134334551:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Hamartin|7-714|1.1e-296 BAT2_N|1475-1530|0.2^BAT2_N|1577-1684|0.029^BAT2_N|2142-2186|0.66 ["TSC1:ArcherDX_panel","TSC1:FoundationOne_panel","TSC1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:1.39Mb] 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.1447 GT 1.9329 AG 1.9329 ENST00000643583.1 1-737 ENST00000684596.1 1212-6690 chr9|-|[1]132921363-132921436[0]|[2]132921819-132921973[1]|[0]132923348-132923492[0]|[2]132925587-132925739[0]|[2]132927201-132927304[1]|[0]132928767-132928872[0]<==>chr9|+|[2]131459164-131459356[2]|[0]131464763-131465078[0]|[1]131467563-131467753[2]|[0]131470788-131470983[0]|[1]131473508-131473724[1]|[2]131474454-131476535[1]|[2]131477744-131477949[0]|[1]131478474-131478619[2]|[0]131479252-131479393[0]|[1]131481726-131481808[2]|[0]131482371-131482562[2]|[0]131482710-131482907[2]|[0]131483359-131483445[2]|[0]131484686-131484790[2]|[0]131484948-131485140[0]|[1]131486085-131486182[2]|[0]131487167-131487294[1]|[2]131487856-131488096[2]|[0]131491425-131491580[2]|[0]131492169-131492260[1]|[2]131494405-131494486[2]|[0]131495740-131495874[2] atggcccaacaagcaaatgtcggggagcttcttgccatgctggactcccccatgctgggtgtgcgggacgacgtgacagctgtctttaaagagaacctcaattctgaccgtggccctatgcttgtaaacaccttggtggattattacctggaaaccagctctcagccggcattgcacatcctgaccaccttgcaagagccacatgacaagcacctcttggacaggattaacgaatatgtgggcaaagccgccactcgtttatccatcctctcgttactgggtcatgtcataagactgcagccatcttggaagcataagctctctcaagcacctcttttgccttctttactaaaatgtctcaagatggacactgacgtcgttgtcctcacaacaggcgtcttggtgttgataaccatgctaccaatgattccacagtctgggaaacagcatcttcttgatttctttgacatttttggccgtctgtcatcatggtgcctgaagaaaccaggccacgtggcggaagtctatctcgtccatctccatgccagtgtgtacgcactctttcatcgcctttatggaatgtacccttgcaacttcgtctcctttttgcgttctcattacagtatgaaagaaaacctggagacttttgaagaagtggtcaagccaatgatggagcatgtgcgaattcatccggaattagtgactggatccaaggaccatgaactggaccctcgaagGAACAGTTGGGACCCTAGGAGGCAGCGGCAGTTGTCAATGAGCTCTGCAGACAGTGCGGACGCTAAGCGGACTCGAGAGGAAGGGAAGGACTGGGCTGAAGCAGTGGGTGCGTCCCGTGTGGTCCGAAAGGCGCCAGACCCTCAGCCACCGCCCAGGAAGCTTCATGGCTGGGCACCAGGCCCTGACTACCAGAAGTCATCAATGGGCAGCATGTTCCGGCAACAGTCCATCGAGGACAAGGAGGACAAGCCCCCACCAAGGCAGAAGTTCATTCAGTCAGAGATGTCCGAGGCGGTGGAGCGAGCCCGAAAGCGCCGGGAAGAAGAGGAGCGCCGAGCCCGGGAGGAGAGGCTGGCCGCCTGTGCTGCCAAACTCAAGCAGCTGGACCAGAAGTGTAAGCAGGCACGAAAGGCAGGTGAGGCCCGGAAGCAGGCAGAGAAGGAAGTGCCCTGGTCTCCAAGTGCTGAGAAGGCATCTCCCCAGGAAAACGGCCCTGCTGTCCACAAAGGCTCCCCAGAATTCCCTGCCCAAGAGACCCCCACCACATTCCCAGAAGAGGCACCCACAGTGTCCCCAGCAGTGGCACAGAGCAACAGCAGTGAGGAAGAGGCCAGAGAGGCTGGGTCCCCTGCACAGGAGTTCAAGTATCAGAAGTCCCTTCCTCCCCGATTCCAGCGCCAGCAGCAGCAACAACAGCAGGAGCAGCTGTACAAGATGCAGCACTGGCAGCCGGTGTACCCCCCGCCGTCCCACCCCCAGCGCACCTTTTACCCACACCACCCCCAGATGTTGGGCTTCGATCCCAGGTGGATGATGATGCCTTCCTACATGGACCCACGTATCACGCCCACTCGGACCCCGGTGGACTTCTACCCCTCCGCCCTGCATCCCTCAGGACTGATGAAGCCCATGATGCCCCAGGAGTCCCTCAATGGGACAGGCTGTCGCTCTGAGGATCAGAACTGTGTGCCCCCACTCCAAGAAAGAAAAGTGACCCCCATCGACTCACCCCCTGTGTGGAGCCCAGAGGGCTACATGGCACTGCAGAGCAAGGGCTACCCGCTCCCGCACCCGAAGTCGAGTGACACCTTGGCTATGGACATGCGTGTCAGGAATGAAAGCTCTTTCTCTGCCTCACTCGGAAGGGCAGGGGGCGTAAGTGCTCAGCGCGATCTCTTTGAGGAGAGAGGGGAGGAGTACTTGAGTGCTTTTGACAAGAAGGCCCAAGCAGACTTTGACAGCTGTATCTCTTCTCAAAGAATAGGCCAGGAGCTTTTGTTTCCACCCCAAGAAAATGTTCAGGATGCAGGTGCTCCTGGGGGTCACACCCAAAACCTCAGGTGTTCCCCATTGGAGCCTGACTTTGTCCCAGATGAGAAAAAGCCAGAGTGTGGCAGTTGGGATGTTAGCCACCAGCCAGAGACCGCTGACACAGCCCATGGTGTTGAGCGGGAGACACCCCGGGAGGGGACGGCCTTTAACATCTCCTCCTGGGACAAGAACGGGAGCCCCAACAAACAGCCATCCTCGGAGCCTGAATGGACTCCCGAGCCCCGGAGCTCCAGCAGCCAGCACCCGGAGCAGACGGGCAGGACCCGGAGGTCGGGACCCATCAAGAAACCAGTCCTGAAAGCCCTCAAGGTGGAAGACAAGGAGAAGGAGCTTGAGAAGATTAAGCAGGAGCTAGGGGAGGAGAGTACCCGGCTGGCCAAGGAGAAGGAGCAGAGCCCCACGGCAGAAAAGGATGAGGACGAAGAGAACGATGCCTCTCTGGCCAACTCCTCCACCACCACTTTGGAGGACAAAGGCCCTGGCCATGCCACTTTTGGCCGCGAGGCCACCAAATTTGAAGAGGAGGAGAAACCTGACAAGGCCTGGGAAGCCAGACCCCCACGAGAGTCCAGCGATGTTCCCCCCATGAAGAGAAATAACTGGATCTTTATTGATGAGGAGCAAGCCTTTGGGGTCAGAGGACAGGCCCGGGGCCGGGGCCGTGGTTTCAGAGAGTTCACTTTTCGTGGTCGGCCTGCTGGCGGAAATGGGAGCGGCCTCTGTGGTGGGGGGGTCCTGGGGGCCCGCAGCATCTACTGCAGCAGTCAGCGCAGCGGCCGTGGCCGGGGCCTGCGAGAGTTTGCGCGGCCAGAGGACTGCCCCAGAGCCAAGCCCCGACGGAGAGTTGCCAGTGAGACCCATAGCGAGGGCTCAGAGTATGAAGAACTTCCCAAGCGCCGCCGGCAGAGGGGCTCCGAGAACGGGAATGAAGGCTCGCTCCTGGAGAGGGAGGAGAGCACCTTGAAGAAGGGCGACTGCAGAGATTCTTGGCGGTCCAACAAGGGGTGCTCTGAGGACCACAGCGGTCTAGATGCCAAGAGCCGAGGCCCTCGGGCCTTTGGGCGAGCCCTCCCTCCCCGGCTGAGCAATTGCGGGTATGGACGGAGAACCTTCGTCTCCAAAGAGTCACCCCACTGGCAGAGCAAAAGTCCAGGCAGCTCTTGGCAGGAATATGGCCCTTCCGACACATGCGGATCCCGGCGACCTACAGACAGAGACTATGTCCCAGATTCCTACAGACACCCTGACGCATTTGGTGGCCGGGGCTTTGAGGACAGCCGCGCGGAGGACAAGAGATCCTTCTTCCAAGATGAACACGTGGCAGATTCTGAAAATGCAGAGAACCGGCCCTTCAGGAGAAGGCGCCCCCCACGCCAAGATAAGCCCCCTCGATTCCGGCGCCTCCGGCAAGAGCGGGAGTCCCTGGGCCTGTGGGGACCCGAGGAGGAGCCCCACCTGCTGGCAGGTCAGTGGCCAGGCAGGCCCAAACTGTGTTCTGGGGACAAGAGTGGCACTGTGGGCCGCAGGTCCCCTGAGCTCTCCTACCAGAACTCCTCCGATCACGCCAATGAGGAGTGGGAGACGGCCTCCGAAAGCAGCGACTTCAGCGAGCGGCGGGAGCGGCGGGAAGGCCCTGGGTCCGAGCCCGACTCCCAGGTGGATGGTGGCCTGTCGGGGGCTAGTTTGGGTGAGAAGAAGGAGCTGGCCAAGAGGAGCTTCTCCAGTCAGAGACCCGTGGTTGACAGACAGAGCCGAAAGCTGGAGCCGGGAGGGTTTGGGGAGAAGCCCGTTAGGCCAGGTGGTGGTGACACCTCCCCTCGCTATGAGAGCCAACAGAATGGGACGCCTTTGAAAGTGAAAAGATCCCCAGACGAGGCCTTGCCTGGAGGTCTTAGTGGCTGCAGCAGTGGGAGTGGCCACTCCCCCTATGCCCTGGAGCGGGCAGCCCATGCCAGTGCTGACCTTCCCGAAGCCTCCAGTAAAAAGGCAGAGAAGGAGGCCAAGTTGGCTGCTCCGAGGGCAGGTGAACAGGGAGAGGCCATGAAACAGTTTGACCTGAACTATGGAAGTGCCATCATTGAAAATTGCGGGTCCAGCCCCGGGGAGGAGAGTGAGGTGGGTTCTATGGTGGGCGAAGGCTTCATCGAAGTCCTGACCAAGAAGCAGCGCCGCCTGCTGGAGGAAGAGAGAAGAAAGAAGGAGCAGGCCGTGCAGGTGCCTGTCAAAGGTCGAGGCCTTTCCTCCCGTATTCCTCCTCGATTTGCAAAAAAGCAGAACAACTTATGTCTGGAGCAAGGTGACGTGACCGTGCCTGGCAGCAGCCTGGGCACTGAGATCTGGGAGAGCAGCAGCCAGGCTCTCCCTGTGCAGGCCCCAGCCAACGACTCCTGGAGGAAAGCTGTCACTGCCTTCAGCAGCACCGAGACTGGCTCTGCGGAGCAGGGTTTTAAGAGCAGCCAGGGAGATAGTGGCGTTGACTTGAGTGCCGAGTCTCGGGAGTCGTCTGCGACCTCCTCGCAGCGCAGCTCCCCATATGGGACTCTGAAGCCAGAGGAGATGAGCGGGCCCGGCCTGGCGGAACCCAAGGCCGACAGCCACAAGGAGCAGGCTCCAAAGCCATCTGAGCAGAAGGATTCAGAACAAGGCTCTGGACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCGAGCGGCTGCAAGGGGCTGTCGTCCCGCCTGTTAACGGGGTGGAGATTCACGTGGACTCCGTGCTGCCTGTGCCACCCATTGAATTTGGAGTCAGTCCAAAAGACTCCGATTTCAGCTTGCCACCTGGTTCTGCCTCTGGTCCTACTGGGAGTCCAGTTGTTAAACTTCAGGATGCCTTGGCCAGTAATGCAGGGTTAACACAGAGTATCCCCATCCTGCGGCGGGACCATCACATCCAGAGGGCCATCGGTCTCTCCCCAATGTCCTTCCCCACCGCCGACCTTACTCTGAAGATGGAGTCTGCGCGCAAGGCTTGGGAAAACTCCCCCAGTTTGCCGGAGCAGAGCTCTCCAGGCGGCGCTGGCTCAGGCATCCAGCCTCCATCCTCTGTGGGTGCCTCCAGCGGGGTCAACTACAGCTCCTTCGGTGGAGTGTCCATGCCACCCATGCCTGTGGCCTCTGTAGCACCTTCTGCTTCTATGCCAGGCAGCCACCTCCCGCCCCTGTACCTGGATGGCCATGTGTTTGCAAGTCAGCCCCGGCTGGTTCCTCAAACGATACCTCAGCAGCAGAGTTACCAACAGGCCGCCGCTGCCCAGCAGATCCCGATCTCCCTTCACACATCTCTGCAGGCACAAGCTCAGCTTGGACTGAGGGGTGGGCTTCCTGTGTCCCAGTCCCAGGAGATCTTCAGCTCCTTGCAGCCCTTCAGATCTCAGGTGTACATGCACCCCAGCCTGTCACCGCCCAGCACCATGATCCTCTCTGGGGGCACAGCCTTGAAGCCTCCATACTCGGCGTTCCCAGGCATGCAGCCCTTGGAGATGGTGAAGCCGCAGTCTGGCTCACCCTACCAGCCCATGAGCGGGAACCAAGCCCTGGTCTACGAGGGCCAGCTCAGCCAGGCTGCTGGCCTGGGTGCCTCCCAGATGTTGGACTCCCAGCTCCCACAGCTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAGCCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAGGCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAGGCAAAACAACGAGTGGATGAGAAACCCAGCCTGGGAGCCGTGAAGCTGCAGGAGGCCCCCTCGGCTGCCTCCCAGATGAAGCGAACCGGAGCGATCAAGCCTCGGGCTGTCAAAGTGGAGGAGAGTAAGGCCTGA MAQQANVGELLAMLDSPMLGVRDDVTAVFKENLNSDRGPMLVNTLVDYYLETSSQPALHILTTLQEPHDKHLLDRINEYVGKAATRLSILSLLGHVIRLQPSWKHKLSQAPLLPSLLKCLKMDTDVVVLTTGVLVLITMLPMIPQSGKQHLLDFFDIFGRLSSWCLKKPGHVAEVYLVHLHASVYALFHRLYGMYPCNFVSFLRSHYSMKENLETFEEVVKPMMEHVRIHPELVTGSKDHELDPRRNSWDPRRQRQLSMSSADSADAKRTREEGKDWAEAVGASRVVRKAPDPQPPPRKLHGWAPGPDYQKSSMGSMFRQQSIEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQARKAGEARKQAEKEVPWSPSAEKASPQENGPAVHKGSPEFPAQETPTTFPEEAPTVSPAVAQSNSSEEEAREAGSPAQEFKYQKSLPPRFQRQQQQQQQEQLYKMQHWQPVYPPPSHPQRTFYPHHPQMLGFDPRWMMMPSYMDPRITPTRTPVDFYPSALHPSGLMKPMMPQESLNGTGCRSEDQNCVPPLQERKVTPIDSPPVWSPEGYMALQSKGYPLPHPKSSDTLAMDMRVRNESSFSASLGRAGGVSAQRDLFEERGEEYLSAFDKKAQADFDSCISSQRIGQELLFPPQENVQDAGAPGGHTQNLRCSPLEPDFVPDEKKPECGSWDVSHQPETADTAHGVERETPREGTAFNISSWDKNGSPNKQPSSEPEWTPEPRSSSSQHPEQTGRTRRSGPIKKPVLKALKVEDKEKELEKIKQELGEESTRLAKEKEQSPTAEKDEDEENDASLANSSTTTLEDKGPGHATFGREATKFEEEEKPDKAWEARPPRESSDVPPMKRNNWIFIDEEQAFGVRGQARGRGRGFREFTFRGRPAGGNGSGLCGGGVLGARSIYCSSQRSGRGRGLREFARPEDCPRAKPRRRVASETHSEGSEYEELPKRRRQRGSENGNEGSLLEREESTLKKGDCRDSWRSNKGCSEDHSGLDAKSRGPRAFGRALPPRLSNCGYGRRTFVSKESPHWQSKSPGSSWQEYGPSDTCGSRRPTDRDYVPDSYRHPDAFGGRGFEDSRAEDKRSFFQDEHVADSENAENRPFRRRRPPRQDKPPRFRRLRQERESLGLWGPEEEPHLLAGQWPGRPKLCSGDKSGTVGRRSPELSYQNSSDHANEEWETASESSDFSERRERREGPGSEPDSQVDGGLSGASLGEKKELAKRSFSSQRPVVDRQSRKLEPGGFGEKPVRPGGGDTSPRYESQQNGTPLKVKRSPDEALPGGLSGCSSGSGHSPYALERAAHASADLPEASSKKAEKEAKLAAPRAGEQGEAMKQFDLNYGSAIIENCGSSPGEESEVGSMVGEGFIEVLTKKQRRLLEEERRKKEQAVQVPVKGRGLSSRIPPRFAKKQNNLCLEQGDVTVPGSSLGTEIWESSSQALPVQAPANDSWRKAVTAFSSTETGSAEQGFKSSQGDSGVDLSAESRESSATSSQRSSPYGTLKPEEMSGPGLAEPKADSHKEQAPKPSEQKDSEQGSGQSKEHRPGPIGNERSLKNRKGSEGAERLQGAVVPPVNGVEIHVDSVLPVPPIEFGVSPKDSDFSLPPGSASGPTGSPVVKLQDALASNAGLTQSIPILRRDHHIQRAIGLSPMSFPTADLTLKMESARKAWENSPSLPEQSSPGGAGSGIQPPSSVGASSGVNYSSFGGVSMPPMPVASVAPSASMPGSHLPPLYLDGHVFASQPRLVPQTIPQQQSYQQAAAAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGMQPLEMVKPQSGSPYQPMSGNQALVYEGQLSQAAGLGASQMLDSQLPQLTMPLPRYGSGQQPLILPQSIQLPPGQSLSVGAPRRIPPPGSQPPVLNTSREPSQMEMKGFHFADSKQNVPSGGPVPSPQTYRPSSASPSGKPSGSAVNMGSVQGHYVQQAKQRVDEKPSLGAVKLQEAPSAASQMKRTGAIKPRAVKVEESKA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tuberous sclerosis 1 gene 1 Yes renal cell carcinoma, bladder carcinoma hamartoma, renal cell carcinoma, tuberous sclerosis tuber Tuberous sclerosis 1 epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 29852 BIRC6::FBXO11 ENSG00000115760.16::ENSG00000138081.22 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 839 TRUE 1465 TRUE 570 BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32357486:+ chr2:32582091-32844638:+ chr2:32582554:+ FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47839769:- chr2:48016455-48133637:- chr2:48066908:- chr2:32385262,chr2:32385260 chr2:47880940,chr2:47880942 NA NA chr2:32610330,chr2:32610328 chr2:48108079,chr2:48108081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BIR-PARTIAL|289-325~|2.3e-24 Beta_helix|331-485|2.1e-20^Beta_helix|357-387|0.012^zf-UBR|358-370|8^F-box|363-383|0.48^NosD|387-479|1.5e-09^Beta_helix|388-543|1.2e-30^CueP|423-443|0.92^NosD|499-660|4.8e-19^CueP|518-539|0.011^Beta_helix|527-673|8.2e-33^CueP|601-627|0.12^NosD|638-716|1e-11^Beta_helix|664-819|5.1e-38^NosD|664-832|1.5e-20^CueP|701-722|0.31^CueP|783-815|2.2^zf-UBR|848-894|8.2e-13 ["BIRC6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:15.17Mb] 11 4 11 1.22 ONLY_REF_SPLICE YES_LDAS 0.1105 GT 1.7465 AG 1.9086 ENST00000700518.1 1-325 ENST00000403359.8 233-2784 chr2|+|[0]32357162-32357486[0]<==>chr2|-|[2]47808118-47808247[2]|[1]47808329-47808427[2]|[1]47809158-47809266[1]|[0]47809600-47809707[1]|[0]47810316-47810426[1]|[0]47813234-47813377[1]|[0]47813791-47813867[2]|[1]47818779-47818864[0]|[2]47818956-47819078[0]|[2]47820362-47820456[1]|[0]47822218-47822303[2]|[1]47823143-47823360[0]|[2]47832349-47832486[0]|[2]47832572-47832678[1]|[0]47832769-47832880[0]|[2]47832964-47833070[1]|[0]47834579-47834711[0]|[2]47834788-47834871[0]|[2]47835872-47836001[2]|[1]47838859-47839003[1]|[0]47839419-47839500[0]|[2]47839642-47839769[1] atggtgactggtggtggtgctgcacctcccgggactgtcactgagccgcttcccagtgtgattgtgctgagcgcaggccggaagatggcggctgcggctgcggcggcctcgggccccggctgctcctcggcggcgggggcgggggcggccggggtctcagagtggctggtgctgcgggacggctgcatgcactgcgacgccgacgggctgcacagcctgtcctaccaccctgcgctcaacgccatcctggccgtcactagccgcgggaccatcaaagtcatcgacggcacctcgggggccacactgcaggcctccgcgctcagtgATGATGATGTGCCTGCAGATATGGTTGCAGAAGAATCAGGTCCTGGTGCACAAAATAGTCCATACCAACTTCGTAGAAAAACTCTTTTGCCGAAAAGAACAGCGTGTCCCACAAAGAACAGTATGGAGGGCGCCTCAACTTCAACTACAGAAAACTTTGGTCATCGTGCAAAACGTGCAAGAGTGTCTGGAAAATCACAAGATCTATCAGCAGCACCTGCTGAACAGTATCTTCAGGAGAAACTGCCAGATGAAGTGGTTCTAAAAATCTTCTCTTACTTGCTGGAACAGGATCTTTGTAGAGCAGCTTGTGTATGTAAACGCTTCAGTGAACTTGCTAATGATCCAATTTTGTGGAAACGATTATATATGGAAGTATTTGAATATACTCGCCCTATGATGCATCCTGAACCTGGAAAATTCTACCAGATTAATCCAGAAGAGTATGAACATCCAAATCCCTGGAAAGAGAGTTTCCAGCAGTTGTATAAAGGTGCACATGTAAAGCCAGGATTTGCTGAACATTTCTACAGTAACCCTGCAAGATATAAAGGAAGAGAAAATATGTTGTATTATGATACTATTGAAGATGCCCTTGGTGGGGTACAAGAGGCTCATTTTGATGGACTTATCTTTGTTCATTCTGGAATATATACTGATGAATGGATATATATTGAATCTCCAATCACCATGATTGGTGCAGCACCTGGGAAAGTGGCAGACAAAGTTATAATTGAAAACACTAGAGATTCAACCTTCGTTTTTATGGAAGGCTCTGAAGATGCTTATGTTGGATATATGACAATAAGGTTTAACCCTGATGACAAATCTGCACAACACCACAATGCACACCACTGCTTAGAGATTACAGTAAATTGTAGCCCTATTATTGATCACTGTATCATCCGAAGTACATGTACAGTTGGTTCTGCAGTATGTGTTAGTGGTCAAGGAGCATGTCCCACCATCAAGCACTGTAACATCAGTGACTGTGAAAATGTTGGACTATATATAACAGATCATGCACAGGGAATATATGAGGATAATGAAATTTCCAATAATGCGTTAGCTGGGATTTGGGTTAAAAATCATGGAAACCCAATTATTAGACGGAATCATATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCATGGCATGGGTTACTTTGAAAGTTGCAATATACACAGAAATAGGATAGCAGGCTTTGAAGTAAAAGCCTATGCTAACCCTACAGTGGTTCGATGTGAAATTCACCATGGGCAGACTGGAGGAATATATGTCCATGAAAAAGGAAGAGGACAATTCATAGAGAATAAAATCTATGCAAACAACTTTGCAGGTGTATGGATTACCTCAAATAGTGACCCAACAATAAGGGGAAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGATGGACGAGGCCTTATTGAAGGAAATGACATTTATGGCAATGCATTAGCAGGAATTCAAATTAGGACAAACAGTTGTCCAATTGTTCGGCATAACAAAATTCATGATGGCCAGCATGGTGGGATTTATGTGCATGAAAAGGGACAAGGAGTAATAGAAGAGAATGAAGTTTATAGTAACACTCTAGCTGGAGTCTGGGTGACAACTGGCAGCACTCCAGTACTGAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTTTATGACAATGGACATGGAGTGCTAGAAGACAATGATATCTATAATCATATGTATTCAGGGGTTCAGATAAGGACTGGAAGCAACCCCAAAATTAGACGCAACAAAATCTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAATATTTGACAATGCAATGGCTGGAGTCTGGATTAAGACAGATAGTAATCCTACACTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAATGCTCAAGCAGGTGTTCTCATCAGCACTAATAGTCATCCAATCTTAAGGAAAAACAGAATATTTGATGGATTTGCCGCAGGTATTGAAATTACAAATCACGCAACTGCAACACTAGAAGGCAATCAGATTTTTAACAACCGGTTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGCCAATGTTTATATAAAATATCAAGTTATACCAGCTATCCCATGCATGATTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTTATTAGACATGATAGGTTTTTCTGTGACTGTGGTGCTGGAACACTGTCTAATCCTTGTACATTAGCTGGTGAGCCTACACATGATACAGATACACTATATGACTCTGCTCCACCTATAGAATCTAATACATTGCAGCACAACTGA MVTGGGAAPPGTVTEPLPSVIVLSAGRKMAAAAAAASGPGCSSAAGAGAAGVSEWLVLRDGCMHCDADGLHSLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCTLAGEPTHDTDTLYDSAPPIESNTLQHN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion 29853 FBXO11::BIRC6 ENSG00000138081.22::ENSG00000115760.16 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 838 FALSE NA FALSE NA FBXO11 ENSG00000138081.22 protein_coding - - chr2:47789316-47906498:- chr2:47905489:- chr2:48016455-48133637:- chr2:48132628:- BIRC6 ENSG00000115760.16 protein_coding + + chr2:32357023-32619571:+ chr2:32388750:+ chr2:32582091-32844638:+ chr2:32613818:+ chr2:47880944,chr2:47880946 chr2:32385267,chr2:32385265 NA NA chr2:48108083,chr2:48108085 chr2:32610335,chr2:32610333 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TFIIA|20-108|0.00053^Ndc1_Nup|25-158|0.0049^CueP|142-192|2.1^F-box-like|158-201|5.5e-22^F-box|158-197|4.2e-13 BIRC6|3463-3618|4e-91^UQ_con|4581-4731|4.9e-29^UEV|4591-4675|6e-08^RWD|4621-4649|8.2e-05 ["BIRC6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:15.17Mb] 11 6 11 6 ONLY_REF_SPLICE YES_LDAS 0.1538 GT 1.6402 AG 1.9899 ENST00000403359.8 1-232 ENST00000421745.7 646-14574 chr2|-|[0]47905489-47905720[0]<==>chr2|+|[0]32388750-32388943[1]|[2]32392039-32392150[2]|[0]32395511-32395593[1]|[2]32401163-32401385[2]|[0]32401463-32401623[1]|[2]32406499-32406557[0]|[1]32414769-32416163[0]|[1]32429146-32429295[0]|[1]32430865-32431090[1]|[2]32433644-32433804[0]|[1]32435496-32435585[0]|[1]32436053-32436184[0]|[1]32439508-32439686[2]|[0]32441329-32441462[1]|[2]32442065-32442226[1]|[2]32442324-32442455[1]|[2]32443491-32443588[0]|[1]32445521-32445668[1]|[2]32448795-32448928[0]|[1]32453808-32453942[0]|[1]32463194-32463381[2]|[0]32464509-32464823[2]|[0]32465065-32465164[0]|[1]32467525-32467739[2]|[0]32467903-32468111[1]|[2]32468437-32468783[0]|[1]32469395-32469614[1]|[2]32470168-32470301[0]|[1]32471014-32471124[0]|[1]32473112-32473239[2]|[0]32476213-32476344[2]|[0]32477368-32477583[2]|[0]32478635-32478818[0]|[1]32479462-32479617[0]|[1]32481320-32481453[2]|[0]32482429-32482582[0]|[1]32485643-32485759[0]|[1]32487647-32487801[2]|[0]32488588-32488714[0]|[1]32490041-32490151[0]|[1]32491425-32491558[2]|[0]32493540-32493667[1]|[2]32499547-32500109[0]|[1]32501713-32501888[2]|[0]32502795-32502891[0]|[1]32503042-32503236[0]|[1]32505005-32505205[0]|[1]32507980-32508259[1]|[2]32509738-32509994[0]|[1]32510526-32510634[1]|[2]32512933-32513154[1]|[2]32514990-32515770[2]|[0]32518254-32518397[2]|[0]32518817-32518946[0]|[1]32524888-32525019[0]|[1]32525464-32525628[0]|[1]32529651-32529824[0]|[1]32531355-32531551[2]|[0]32543241-32543541[0]|[1]32545643-32545860[2]|[0]32547850-32548014[2]|[0]32549313-32549481[0]|[1]32575156-32575366[1]|[2]32593915-32594060[0]|[1]32595034-32595144[0]|[1]32597751-32597968[2]|[0]32599739-32599900[2]|[0]32603006-32603083[2]|[0]32607455-32607643[2]|[0]32611448-32611582[2]|[0]32617725-32617904[2] atgaactccgtccgagccgccaaccggagacccaggcgagtgtcgcggccgcgcccggtgcagcaacagcagcagcagcccccgcagcagccgccgccgcagccgccccagcagcagccgccccagcagcagcctccgccgccgccgcagcagcagcagcagcagcagcctccgccgccgccaccgccgcctccgccgctgcctcaggagcggaacaacgtcggcgagcgggTGGGCCACAGTTACATTTCATCTTCCTCATCATGTGTTGAAGTCCATTGCCAGTGCCATTGTAAATGAACTCAAGAAAATAAATCAAAATGTTGCTGCCTTACCTGTGGCGTCCTCAGTGATGGACAGATTGTCTTACCTCTTACCTAGTGCACGTCCAGAACTCGGAGTGGGGCCAGGCCGTTCTGTAGACAGATCACTGATGTATAGTGAAGCTAACAGACGGGAGACATTTACCTCATGGCCTCATGTAGGCTATAGGTGGGCACAACCAGATCCCATGGCTCAAGCTGGATTTTATCATCAGCCTGCCTCATCTGGAGATGATAGAGCCATGTGTTTTACTTGTAGTGTATGCCTCGTTTGTTGGGAACCTACTGATGAACCTTGGTCTGAACACGAAAGACATTCCCCAAACTGCCCATTTGTGAAAGGTGAGCACACACAGAATGTGCCATTGTCAGTCACTCTTGCAACAAGTCCTGCACAGTTTCCTTGTACGGATGGAACTGACAGAATATCTTGCTTTGGGTCGGGGAGCTGCCCTCATTTTCTAGCTGCTGCAACTAAACGAGGAAAGATCTGCATATGGGATGTTTCCAAACTTATGAAGGTGCACTTAAAGTTTGAAATTAATGCCTATGATCCAGCAATTGTACAACAGCTTATTCTATCAGGAGACCCAAGCTCAGGAGTTGATTCAAGGAGACCAACTTTGGCGTGGCTGGAGGACTCCTCTAGTTGCTCAGATATACCAAAATTGGAAGGAGATAGTGATGATTTACTGGAGGATTCAGACAGTGAAGAGCATTCCAGATCAGATTCTGTGACAGGGCATACATCACAGAAGGAAGCCATGGAAGTAAGCCTTGATATAACAGCACTCAGCATTCTCCAACAGCCAGAAAAACTTCAGTGGGAGATTGTTGCAAATGTGCTTGAAGATACTGTTAAGGATCTTGAAGAACTTGGGGCAAATCCTTGTTTAACAAACTCTAAGAGTGAAAAGACAAAGGAAAAGCACCAGGAGCAACACAACATTCCTTTTCCATGTTTATTAGCTGGAGGTTTATTAACATATAAATCTCCTGCTACCTCACCCATTAGTAGTAATTCTCACAGGTCACTGGATGGTTTAAGCAGAACTCAGGGTGAAAGTATATCAGAACAAGGGTCAACTGACAATGAATCCTGCACTAATTCAGAACTAAATTCTCCTCTGGTAAGGAGGACTTTACCGGTTTTGCTTCTTTATAGCATCAAGGAATCTGATGAGAAAGCAGGAAAGATCTTTTCACAGATGAACAATATTATGAGTAAAAGTTTGCATGATGATGGTTTTACTGTTCCACAGATTATTGAAATGGAGCTGGATAGTCAGGAGCAGTTGTTATTGCAGGATCCTCCTGTGACTTACATTCAGCAATTTGCAGATGCAGCAGCCAACCTTACCTCTCCGGATTCTGAGAAGTGGAACTCTGTGTTTCCCAAGCCTGGGACTTTGGTTCAGTGCTTGAGGCTGCCAAAGTTTGCAGAGGAGGAGAATCTTTGTATAGACTCAATAACTCCTTGTGCTGACGGAATTCATTTGTTGGTAGGACTGCGGACATGCCCTGTTGAATCCTTGAGTGCAATAAATCAAGTAGAGGCCTTGAATAATTTAAATAAATTAAACTCTGCACTATGTAATAGACGGAAAGGTGAGCTGGAATCAAATCTTGCTGTAGTGAATGGTGCAAATATTAGTGTAATCCAACATGAATCACCAGCAGATGTACAGACTCCTTTAATAATTCAGCCTGAGCAGAGGAATGTTAGTGGTGGATATTTAGTGCTTTATAAAATGAATTATGCCACTCGGATAGTGACTTTAGAAGAGGAGCCAATAAAAATACAACATATCAAAGATCCCCAGGACACAATTACCTCGCTCATTTTGCTTCCACCCGATATATTGGATAATCGAGAGGATGACTGTGAGGAACCTATTGAGGACATGCAGTTAACCTCAAAGAATGGTTTTGAGAGAGAAAAAACGTCTGACATTTCTACTCTTGGACACCTGGTAATAACCACTCAGGGAGGATATGTAAAAATACTAGATCTTTCAAACTTTGAAATTTTGGCCAAAGTGGAGCCTCCCAAAAAGGAGGGCACTGAGGAACAGGACACATTTGTTTCTGTGATTTACTGTTCTGGCACAGACAGGCTGTGTGCATGCACCAAAGGTGGTGAGCTTCATTTTCTCCAAATTGGAGGAACCTGTGATGATATTGATGAAGCTGATATACTAGTGGATGGATCTCTTTCTAAAGGAATAGAACCATCTTCAGAAGGTTCCAAACCTTTATCAAATCCTTCAAGTCCTGGCATTTCAGGAGTTGATTTATTGGTGGACCAGCCATTCACCCTTGAAATCTTGACATCCCTAGTGGAGCTAACCCGCTTTGAGACTTTGACTCCAAGGTTTTCAGCGACTGTTCCTCCATGCTGGGTAGAAGTTCAACAAGAACAGCAGCAAAGGAGGCATCCTCAACATTTGCATCAGCAACACCATGGTGATGCTGCTCAGCATACTCGAACTTGGAAACTACAGACCGACAGCAACAGCTGGGATGAACATGTATTTGAATTAGTACTACCTAAAGCTTGTATGGTTGGACATGTGGACTTCAAATTCGTTTTGAACTCAAACATCACCAATATTCCACAGATACAAGTGACACTGCTGAAAAATAAAGCTCCAGGATTAGGGAAAGTCAATGCTCTTAACATTGAAGTGGAACAAAATGGGAAACCGTCCCTGGTTGATTTGAATGAAGAAATGCAGCACATGGATGTAGAGGAATCACAGTGTCTTAGATTATGTCCATTTTTGGAGGATCATAAAGAAGACATTCTATGTGGGCCAGTATGGCTTGCTAGTGGCCTTGATCTATCAGGGCATGCTGGAATGTTGACGTTAACAAGCCCCAAACTTGTTAAAGGTATGGCAGGAGGAAAATATCGTTCGTTTTTAATCCATGTCAAGGCAGTGAATGAAAGAGGAACAGAAGAGATTTGTAATGGTGGTATGCGTCCTGTAGTAAGGCTTCCATCCCTAAAACACCAGAGTAACAAGGGTTATTCACTTGCTTCACTTTTGGCTAAAGTTGCAGCAGGCAAGGAAAAATCATCTAATGTTAAGAATGAAAATACAAGTGGCACCCGTAAATCTGAAAACCTCCGGGGCTGTGATTTACTTCAAGAGGTCTCAGTCACCATTCGAAGATTTAAGAAAACCTCAATTTCTAAGGAAAGAGTGCAACGATGTGCCATGTTACAGTTTTCAGAATTTCATGAGAAGCTTCTTAATACTCTTTGCAGAAAAACAGATGATGGCCAGATCACAGAACATGCCCAGAGCCTTGTGTTGGATACTCTCTGTTGGTTAGCTGGAGTTCATTCAAATGGACCCGGAAGCTCAAAGGAAGGAAATGAGAACCTACTTTCAAAAACACGAAAATTTCTGTCAGACATCGTACGTGTTTGCTTCTTTGAGGCAGGACGAAGTATAGCCCATAAGTGTGCCCGATTTCTAGCCTTGTGCATTAGTAATGGCAAATGTGACCCATGTCAACCAGCATTTGGACCTGTTCTGTTGAAGGCTTTACTTGATAATATGTCATTTTTACCTGCAGCAACAACTGGTGGTTCTGTCTATTGGTATTTTGTCTTACTGAATTATGTGAAAGATGAAGATCTGGCTGGATGCAGTACAGCTTGTGCATCTTTGCTTACTGCAGTGTCCAGACAGTTACAGGACAGGCTAACACCAATGGAGGCTTTACTTCAGACAAGATATGGATTATATAGCTCACCATTTGATCCAGTCCTCTTTGATTTGGAGATGAGTGGCTCTTCTTGTAAAAATGTTTATAACAGCAGCATTGGTGTCCAGTCAGATGAAATTGATTTATCAGATGTCCTTTCAGGAAATGGAAAGGTCAGTAGTTGCACAGCTGCTGAGGGTAGTTTCACATCTCTCACTGGACTTTTGGAAGTTGAACCTCTGCACTTTACTTGTGTGTCAACTAGTGATGGAACCAGAATAGAAAGGGATGATGCAATGAGTTCCTTCGGGGTTACTCCTGCAGTAGGTGGACTATCATCTGGGACAGTTGGGGAAGCCTCGACAGCCCTGAGTTCAGCAGCCCAGGTAGCTTTGCAGTCTCTCTCTCATGCAATGGCTTCAGCCGAGCAACAGCTACAGGTGCTGCAAGAGAAACAGCAGCAGCTTTTGAAGCTTCAGCAACAGAAAGCAAAGCTGGAAGCCAAGTTACATCAGACAACAGCTGCAGCAGCTGCAGCAGCATCAGCAGTAGGTCCTGTTCACAACTCTGTGCCTTCCAACCCAGTGGCTGCCCCTGGATTCTTCATTCATCCATCTGATGTTATTCCACCCACTCCAAAAACAACACCTCTTTTTATGACTCCACCACTCACTCCACCCAATGAAGCAGTTTCCGTTGTGATTAATGCCGAACTTGCACAGCTTTTCCCAGGCTCAGTCATTGATCCCCCAGCAGTCAATCTTGCTGCACATAACAAAAATTCCAACAAGTCCAGAATGAATCCACTTGGTTCTGGTCTAGCCCTTGCAATTTCTCATGCTTCACATTTTCTTCAACCTCCGCCTCACCAGTCCATTATTATAGAGCGAATGCATTCAGGAGCAAGAAGATTTGTGACCTTGGATTTTGGGAGGCCTATATTGTTGACTGATGTATTGATTCCCACTTGTGGAGACTTGGCCTCTTTGTCAATTGACATTTGGACATTAGGAGAAGAGGTGGATGGAAGGCGGTTGGTAGTGGCAACTGATATAAGCACTCATTCACTAATTCTTCATGACTTAATACCACCTCCCGTGTGCAGATTCATGAAGATCACTGTTATTGGACGTTACGGGAGTACAAATGCCAGAGCCAAAATCCCATTAGGATTTTACTATGGTCATACCTACATCTTGCCTTGGGAAAGTGAACTGAAGTTAATGCATGATCCTCTAAAGGGAGAGGGAGAATCTGCAAACCAGCCAGAAATTGACCAGCATTTAGCAATGATGGTTGCTTTGCAGGAGGATATACAGTGCAGGTATAACTTGGCTTGTCATCGTCTGGAAACCCTTTTGCAAAGTATTGATCTTCCTCCTCTAAACAGTGCTAACAATGCACAGTACTTTTTACGAAAACCAGATAAGGCAGTTGAGGAAGACAGTAGGGTTTTTTCTGCTTATCAAGATTGTATTCAGCTACAGCTTCAACTAAATTTGGCTCATAATGCAGTGCAGAGGCTCAAAGTGGCGCTAGGTGCAAGCCGGAAGATGTTGAGTGAAACATCAAATCCAGAAGATTTAATTCAGACATCTTCCACAGAGCAGTTACGTACTATCATCAGATATTTACTGGACACTTTGCTCAGCCTGCTTCATGCTTCTAATGGACACTCTGTTCCTGCAGTTTTGCAGAGCACATTTCATGCCCAGGCCTGTGAAGAGCTCTTTAAACACTTGTGCATCAGTGGAACCCCAAAGATACGGTTACATACTGGTCTTCTTCTTGTTCAACTGTGTGGTGGTGAAAGGTGGTGGGGTCAATTTCTTTCTAATGTCCTTCAGGAATTGTACAATTCGGAACAGCTTCTCATCTTTCCACAGGATAGGGTCTTCATGTTACTTTCCTGCATTGGTCAAAGATCACTTAGTAATAGTGGAGTATTAGAAAGCTTACTTAATCTCTTGGATAATTTATTGTCACCTCTTCAGCCACAGTTACCCATGCATAGGAGGACAGAAGGAGTACTAGATATTCCCATGATCAGTTGGGTTGTTATGCTGGTGTCCAGGTTGCTGGATTATGTGGCAACTGTTGAAGATGAAGCAGCAGCTGCAAAGAAACCTTTGAATGGTAATCAGTGGAGTTTTATTAACAATAATCTACACACTCAGAGCTTAAATAGATCTTCTAAAGGCAGCAGTAGCCTTGATAGATTATATTCCAGAAAAATCAGAAAGCAGCTTGTTCATCATAAACAGCAACTTAACCTACTAAAAGCAAAGCAGAAGGCATTGGTAGAACAGATGGAAAAAGAAAAAATACAAAGTAACAAAGGATCATCATATAAACTCCTGGTAGAACAAGCAAAACTAAAGCAGGCCACTTCAAAGCACTTTAAGGATTTAATTCGTTTACGTCGGACAGCAGAATGGTCCCGTTCTAATTTAGACACAGAAGTTACAACAGCAAAAGAAAGTCCTGAGATAGAACCACTTCCATTTACTCTGGCCCATGAGCGTTGTATCTCAGTAGTCCAGAAACTTGTTCTGTTTCTTCTCTCCATGGACTTTACATGTCATGCAGATCTCTTATTGTTTGTTTGTAAGGTTCTTGCACGCATTGCAAATGCCACGAGGCCAACTATTCATCTGTGTGAGATTGTGAACGAACCCCAGCTGGAAAGACTGCTGTTACTTTTGGTTGGAACTGACTTCAATAGAGGAGATATATCTTGGGGTGGTGCTTGGGCTCAGTATTCCTTAACTTGCATGCTACAAGATATTTTAGCAGGAGAATTACTGGCTCCAGTAGCCGCAGAAGCCATGGAGGAAGGAACAGTGGGTGATGATGTAGGTGCGACAGCTGGTGACTCTGATGACTCCCTTCAACAGTCCTCAGTTCAGTTGCTGGAAACTATAGATGAACCTTTGACACATGACATAACAGGTGCACCTCCTCTGTCCTCTTTGGAAAAAGATAAAGAAATTGACCTTGAGTTACTTCAGGATCTAATGGAAGTTGACATTGATCCTTTAGATATTGATTTGGAAAAGGACCCTCTTGCAGCCAAGGTTTTTAAGCCAATAAGCAGTACATGGTATGATTATTGGGGTGCTGATTATGGGACCTACAATTACAACCCTTACATTGGAGGTCTGGGAATTCCTGTAGCAAAGCCACCAGCAAACACGGAGAAGAACGGATCACAGACAGTTAGCGTTTCAGTCTCTCAGGCCCTGGATGCTCGCCTAGAAGTTGGACTTGAACAGCAAGCAGAACTGATGTTGAAAATGATGTCTACTCTGGAGGCAGATTCCATTTTACAGGCATTAACAAATACATCTCCTACATTATCACAGTCTCCCACTGGAACAGATGATTCACTTCTAGGGGGTTTACAAGCAGCAAACCAAACCAGCCAGCTTATTATACAGTTATCATCTGTCCCAATGTTAAATGTTTGTTTCAACAAACTTTTTTCCATGCTTCAAGTCCATCATGTTCAGTTGGAGTCACTTCTCCAATTGTGGCTCACACTGAGCCTGAATTCTAGTTCAACTGGAAACAAAGAAAATGGAGCAGACATATTTTTATATAATGCTAATAGGATACCTGTTATTTCATTAAATCAAGCATCAATAACTAGCTTTCTCACAGTGTTAGCTTGGTATCCCAATACTTTGCTCCGGACATGGTGCCTTGTGCTTCATAGCCTAACACTCATGACAAACATGCAGCTTAATTCTGGTTCCAGCAGTGCCATTGGAACTCAGGAGAGTACTGCTCATTTGTTGGTTTCAGATCCAAACCTAATTCATGTATTAGTGAAATTTCTTTCTGGCACCAGTCCACATGGAACAAATCAACACAGTCCACAGGTTGGTCCTACAGCTACACAAGCTATGCAAGAATTTCTTACTCGATTACAAGTGCATCTTTCTTCAACATGTCCTCAGATATTCAGTGAATTTTTGCTCAAGCTAATTCATATACTTTCAACTGAAAGGGGTGCTTTCCAGACAGGCCAAGGACCTCTCGATGCCCAAGTGAAGCTCTTAGAATTCACTCTGGAGCAGAATTTTGAAGTCGTTTCAGTTAGTACTATTTCTGCCGTGATAGAATCGGTTACATTTTTAGTGCACCACTATATCACTTGCTCAGACAAAGTAATGTCAAGAAGTGGATCAGATAGCTCCGTGGGTGCTCGAGCATGCTTTGGGGGACTCTTTGCCAATCTTATTCGTCCGGGTGATGCAAAAGCAGTTTGTGGCGAAATGACAAGAGATCAACTCATGTTTGATTTGTTAAAACTTGTTAACATTTTAGTGCAGCTGCCTCTTTCAGGCAATAGGGAATACAGTGCAAGAGTGTCTGTGACCACAAATACAACAGATAGTGTTTCAGATGAAGAAAAAGTCTCAGGAGGCAAAGATGGCAATGGAAGCAGTACCAGTGTTCAAGGATCGCCTGCATATGTTGCTGACTTAGTCTTAGCCAACCAACAAATTATGAGCCAGATTTTGTCTGCTCTGGGCCTGTGTAATAGCAGTGCCATGGCAATGATAATTGGAGCAAGTGGATTACATCTCACTAAACATGAAAACTTTCATGGTGGGTTGGATGCCATATCAGTTGGGGATGGATTATTTACCATACTGACAACCCTTAGTAAAAAAGCTTCTACAGTCCACATGATGCTGCAGCCAATTTTAACATACATGGCCTGTGGATATATGGGCAGACAAGGCTCTCTTGCTACTTGCCAGTTATCTGAGCCATTATTGTGGTTCATTTTGAGAGTATTGGATACTAGTGATGCCTTGAAAGCATTTCATGATATGGGTGGTGTTCAGCTCATATGCAATAATATGGTTACTAGTACAAGGGCTATTGTGAACACTGCAAGAAGTATGGTATCAACTATTATGAAATTTCTTGACTCTGGTCCAAATAAAGCTGTTGACAGCACATTGAAAACAAGAATACTAGCTTCTGAGCCTGACAATGCTGAAGGGATTCATAACTTTGCACCCCTCGGTACAATCACATCTAGCAGTCCTACTGCCCAACCAGCTGAAGTGCTATTGCAGGCCACACCTCCTCACAGAAGAGCTCGCTCTGCTGCTTGGTCCTACATCTTTCTTCCAGAGGAGGCTTGGTGTGACCTTACCATTCACCTTCCTGCAGCAGTGCTGCTTAAGGAGATACATATCCAGCCTCATCTTGCATCTCTTGCAACCTGCCCTTCCTCAGTGTCTGTTGAAGTAAGTGCAGATGGGGTAAATATGCTACCTTTGTCCACTCCTGTTGTCACAAGTGGCCTCACCTACATAAAAATTCAGCTTGTAAAAGCCGAAGTAGCTTCTGCTGTCTGCCTTAGACTACATCGTCCACGGGATGCCAGCACATTAGGCCTTTCACAAATTAAATTATTGGGGCTCACTGCTTTTGGTACCACCTCTTCTGCAACAGTTAATAATCCATTCCTTCCATCTGAAGATCAGGTATCCAAAACAAGTATTGGATGGTTACGGTTATTACATCATTGCCTTACTCACATAAGTGATCTAGAAGGAATGATGGCAAGTGCAGCTGCACCTACTGCTAATCTGCTGCAGACTTGTGCGGCCTTATTGATGTCACCTTACTGTGGAATGCATTCACCCAACATCGAGGTTGTGCTTGTAAAGATAGGACTGCAGTCTACTAGAATTGGCCTGAAGCTCATAGACATTCTCCTGAGAAATTGTGCAGCATCAGGCAGTGATCCTACAGATTTGAATAGTCCTTTACTTTTTGGAAGACTAAATGGACTCTCTTCTGACTCTACGATAGATATTCTTTACCAGCTTGGAACAACTCAGGATCCTGGTACAAAAGACAGAATTCAGGCCTTGTTAAAATGGGTTAGTGATTCTGCAAGAGTGGCTGCTATGAAGAGAAGTGGCAGGATGAACTACATGTGTCCTAACTCCTCAACAGTAGAGTATGGTCTTCTGATGCCATCTCCTTCTCATTTGCACTGTGTAGCAGCCATTCTGTGGCATAGTTATGAGCTGCTTGTAGAATATGACTTACCAGCACTCCTGGACCAAGAGCTCTTTGAGTTACTTTTTAATTGGTCCATGTCTCTTCCCTGCAATATGGTTTTGAAGAAAGCTGTTGACAGTCTACTTTGCTCAATGTGTCACGTACACCCAAACTATTTTTCTTTGCTCATGGGCTGGATGGGAATTACCCCTCCTCCAGTGCAATGTCATCATAGACTGTCCATGACAGATGATAGCAAAAAGCAGGATCTTAGTTCATCTTTAACAGATGACTCTAAAAATGCACAAGCACCTCTCGCATTAACTGAATCACATTTGGCTACCCTTGCTTCCTCTTCTCAATCTCCTGAAGCTATTAAACAATTACTAGACTCAGGTTTGCCTTCTCTTCTTGTGAGGAGTCTGGCTAGTTTCTGCTTTAGCCACATTTCTAGCTCAGAAAGCATTGCCCAGTCAATAGATATTTCCCAGGACAAACTCAGGCGCCATCATGTCCCACAACAATGTAATAAGATGCCTATCACAGCCGACCTAGTTGCTCCTATTCTTAGGTTTTTGACAGAAGTTGGCAATAGCCATATTATGAAAGATTGGCTTGGTGGTTCTGAAGTCAATCCACTATGGACAGCACTTCTGTTTTTATTGTGTCACTCTGGGTCCACTTCTGGAAGCCATAATTTAGGTGCACAACAGACCAGTGCAAGATCAGCTTCTCTTTCTTCAGCTGCTACAACAGGACTGACTACTCAACAGCGCACAGCAATTGAGAATGCAACTGTTGCGTTCTTTCTACAGTGCATTTCATGCCATCCTAATAATCAAAAGCTGATGGCACAGGTTCTTTGTGAACTATTTCAGACATCTCCTCAAAGAGGGAACCTTCCAACATCTGGGAACATTTCAGGGTTTATACGAAGATTATTTTTACAGTTGATGCTGGAAGATGAGAAAGTGACAATGTTTCTTCAGTCTCCATGTCCACTGTACAAAGGTAGAATTAATGCTACTAGCCACGTCATCCAGCATCCAATGTATGGAGCAGGCCACAAATTCCGTACTCTTCATTTGCCAGTCTCAACAACATTATCAGATGTTCTTGACAGAGTGTCAGATACTCCAAGTATCACAGCTAAATTAATTAGTGAACAAAAAGATGACAAAGAAAAGAAAAACCATGAAGAGAAAGAAAAAGTTAAAGCGGAAAATGGATTTCAAGACAATTACAGTGTTGTTGTTGCCTCTGGGCTGAAGTCTCAATCTAAACGTGCTGTGTCAGCTACACCACCTCGCCCACCATCCAGGAGGGGGAGGACAATACCTGATAAAATAGGAAGTACTTCAGGAGCAGAGGCTGCCAACAAAATAATTACTGTCCCAGTGTTTCACCTGTTTCACAAACTCTTGGCAGGCCAGCCATTGCCAGCTGAAATGACACTTGCCCAGCTTTTAACTCTCCTATATGACCGAAAACTTCCTCAGGGTTACCGCTCAATAGATCTGACTGTTAAATTGGGATCAAGAGTTATAACAGACCCCAGTCTATCAAAAACAGATTCTTATAAAAGACTACACCCTGAAAAAGATCATGGAGACTTACTTGCTAGCTGTCCAGAAGATGAGGCTCTCACTCCAGGTGATGAATGCATGGATGGGATACTGGATGAATCTTTGCTTGAAACCTGTCCAATTCAGTCACCATTACAAGTTTTTGCAGGAATGGGTGGACTGGCTCTTATTGCTGAAAGACTACCCATGCTATATCCAGAAGTAATTCAACAGGTGAGTGCTCCAGTTGTAACATCTACCACTCAGGAAAAGCCGAAGGATAGCGATCAGTTTGAATGGGTGACCATTGAACAGTCAGGGGAGTTAGTTTATGAAGCACCAGAAACTGTTGCGGCTGAACCTCCACCTATCAAGTCAGCAGTACAGACCATGTCTCCCATACCTGCCCATTCTTTGGCTGCTTTTGGATTATTTCTTCGTCTTCCGGGCTATGCGGAAGTGCTACTGAAAGAGAGAAAACATGCCCAGTGCCTTCTTCGATTGGTATTGGGAGTGACAGATGATGGAGAAGGAAGTCATATTCTTCAATCTCCATCAGCCAATGTGCTTCCAACCCTTCCTTTCCACGTCCTTCGTAGCTTGTTTAGCACTACACCTTTGACAACTGATGATGGTGTACTTCTAAGGCGGATGGCATTGGAAATTGGAGCCTTACACCTCATTCTTGTCTGTCTCTCTGCTTTGAGCCACCATTCCCCACGAGTTCCAAACTCTAGCGTGAATCAAACTGAGCCACAGGTGTCAAGCTCTCATAACCCTACATCAACAGAAGAACAACAGTTATATTGGGCCAAAGGGACTGGCTTTGGAACAGGCTCTACAGCTTCTGGGTGGGATGTGGAACAAGCCTTAACTAAGCAAAGGCTGGAAGAGGAACATGTTACCTGCCTTCTGCAGGTTCTTGCCAGTTACATAAATCCCGTCAGTAGTGCGGTAAATGGAGAAGCTCAGTCATCTCATGAGACTAGAGGGCAGAACAGTAATGCCCTTCCTTCTGTACTTCTCGAGCTTCTCAGTCAGTCCTGCCTCATCCCAGCCATGTCATCTTATCTACGAAATGATTCAGTTCTGGACATGGCAAGACATGTGCCACTCTATCGGGCACTGCTGGAATTGCTTCGGGCCATTGCTTCTTGTGCTGCCATGGTGCCCCTATTGTTGCCCCTTTCTACAGAGAACGGTGAAGAGGAAGAAGAACAGTCAGAATGTCAAACTTCTGTTGGTACATTGTTAGCCAAAATGAAGACCTGTGTTGATACCTATACCAACCGTTTAAGATCTAAAAGGGAAAATGTTAAAACAGGAGTAAAACCAGATGCGTCTGATCAAGAACCAGAAGGACTTACTCTTTTGGTACCAGACATCCAAAAGACTGCTGAGATAGTTTATGCAGCCACCACCAGTTTGCGGCAAGCAAATCAGGAAAAAAAACTGGGTGAATACTCCAAGAAGGCGGCTATGAAACCCAAACCTTTGTCAGTATTAAAGTCACTTGAAGAAAAATATGTGGCTGTTATGAAGAAATTACAGTTTGATACGTTTGAAATGGTTTCTGAAGATGAAGATGGGAAATTGGGATTTAAAGTAAATTACCACTACATGTCTCAGGTGAAAAATGCTAATGATGCGAACAGTGCTGCCAGAGCTCGCCGCCTTGCCCAGGAAGCTGTGACGCTTTCAACCTCACTGCCTCTGTCTTCATCCTCTAGTGTGTTTGTACGCTGTGATGAGGAGCGACTTGATATCATGAAGGTTCTAATAACTGGTCCAGCGGACACCCCTTATGCAAATGGCTGCTTTGAGTTTGATGTGTATTTTCCTCAAGATTATCCCAGTTCACCCCCTCTTGTGAATCTAGAGACAACTGGTGGTCATAGCGTGCGATTCAATCCAAACCTTTATAATGATGGCAAGGTTTGTTTAAGCATCTTAAACACGTGGCATGGAAGACCAGAAGAGAAGTGGAATCCTCAGACCTCAAGCTTTTTGCAAGTGTTGGTGTCTGTCCAGTCCCTTATATTAGTAGCTGAGCCTTATTTTAATGAACCGGGATATGAACGGTCTAGAGGCACTCCCAGTGGCACACAGAGTTCTCGAGAATATGATGGAAACATTCGACAAGCAACAGTTAAGTGGGCAATGCTAGAACAAATCAGAAACCCTTCACCATGTTTTAAAGAGGTAATACACAAACATTTTTACTTGAAAAGAGTTGAGATAATGGCCCAATGTGAGGAGTGGATTGCGGATATCCAGCAGTACAGCAGTGATAAGCGGGTAGGCAGGACTATGTCTCACCATGCAGCAGCTCTCAAGCGTCACACTGCTCAGCTCCGCGAAGAGTTGCTGAAACTTCCCTGCCCTGAAGGCTTGGATCCTGACACTGACGATGCCCCAGAGGTGTGCAGAGCCACAACAGGTGCTGAGGAGACTCTAATGCATGATCAGGTTAAACCCAGCAGCAGCAAAGAACTCCCCAGTGACTTCCAGTTATGA MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPPPPPPPPLPQERNNVGERVGHSYISSSSSCVEVHCQCHCK*TQENKSKCCCLTCGVLSDGQIVLPLT*CTSRTRSGARPFCRQITDV**S*QTGDIYLMASCRL*VGTTRSHGSSWILSSACLIWR**SHVFYL*CMPRLLGTY**TLV*TRKTFPKLPICER*AHTECAIVSHSCNKSCTVSLYGWN*QNILLWVGELPSFSSCCN*TRKDLHMGCFQTYEGALKV*N*CL*SSNCTTAYSIRRPKLRS*FKETNFGVAGGLL*LLRYTKIGRR***FTGGFRQ*RAFQIRFCDRAYITEGSHGSKP*YNSTQHSPTARKTSVGDCCKCA*RYC*GS*RTWGKSLFNKL*E*KDKGKAPGATQHSFSMFISWRFINI*ISCYLTH***FSQVTGWFKQNSG*KYIRTRVN*Q*ILH*FRTKFSSGKEDFTGFASL*HQGI**ESRKDLFTDEQYYE*KFA**WFYCSTDY*NGAG*SGAVVIAGSSCDLHSAICRCSSQPYLSGF*EVELCVSQAWDFGSVLEAAKVCRGGESLYRLNNSLC*RNSFVGRTADMPC*ILECNKSSRGLE*FK*IKLCTM**TER*AGIKSCCSEWCKY*CNPT*ITSRCTDSFNNSA*AEEC*WWIFSAL*NELCHSDSDFRRGANKNTTYQRSPGHNYLAHFASTRYIG*SRG*L*GTY*GHAVNLKEWF*ERKNV*HFYSWTPGNNHSGRICKNTRSFKL*NFGQSGASQKGGH*GTGHICFCDLLFWHRQAVCMHQRW*ASFSPNWRNL**Y**S*YTSGWISF*RNRTIFRRFQTFIKSFKSWHFRS*FIGGPAIHP*NLDIPSGANPL*DFDSKVFSDCSSMLGRSSTRTAAKEASSTFASATPW*CCSAYSNLETTDRQQQLG*TCI*ISTT*SLYGWTCGLQIRFELKHHQYSTDTSDTAEK*SSRIRESQCS*H*SGTKWETVPG*FE*RNAAHGCRGITVS*IMSIFGGS*RRHSMWASMAC*WP*SIRACWNVDVNKPQTC*RYGRRKISFVFNPCQGSE*KRNRRDL*WWYASCSKASIPKTPE*QGLFTCFTFG*SCSRQGKII*C*E*KYKWHP*I*KPPGL*FTSRGLSHHSKI*ENLNF*GKSATMCHVTVFRIS*EAS*YSLQKNR*WPDHRTCPEPCVGYSLLVSWSSFKWTRKLKGRK*EPTFKNTKISVRHRTCLLL*GRTKYSP*VCPISSLVH**WQM*PMSTSIWTCSVEGFT**YVIFTCSNNWWFCLLVFCLTELCER*RSGWMQYSLCIFAYCSVQTVTGQANTNGGFTSDKIWII*LTI*SSPL*FGDEWLFL*KCL*QQHWCPVR*N*FIRCPFRKWKGQ*LHSC*G*FHISHWTFGS*TSALYLCVN**WNQNRKG*CNEFLRGYSCSRWTIIWDSWGSLDSPEFSSPGSFAVSLSCNGFSRATATGAARETAAAFEASATESKAGSQVTSDNSCSSCSSISSRSCSQLCAFQPSGCPWILHSSI*CYSTHSKNNTSFYDSTTHSTQ*SSFRCD*CRTCTAFPRLSH*SPSSQSCCT*QKFQQVQNESTWFWSSPCNFSCFTFSSTSASPVHYYRANAFRSKKICDLGFWEAYIVD*CIDSHLWRLGLFVN*HLDIRRRGGWKAVGSGN*YKHSFTNSS*LNTTSRVQIHEDHCYWTLREYKCQSQNPIRILLWSYLHLALGK*TEVNA*SSKGRGRICKPARN*PAFSNDGCFAGGYTVQV*LGLSSSGNPFAKY*SSSSKQC*QCTVLFTKTR*GS*GRQ*GFFCLSRLYSATASTKFGS*CSAEAQSGARCKPEDVE*NIKSRRFNSDIFHRAVTYYHQIFTGHFAQPASCF*WTLCSCSFAEHISCPGL*RAL*TLVHQWNPKDTVTYWSSSCSTVWW*KVVGSISF*CPSGIVQFGTASHLSTG*GLHVTFLHWSKIT***WSIRKLT*SLG*FIVTSSATVTHA*EDRRSTRYSHDQLGCYAGVQVAGLCGNC*R*SSSCKETFEW*SVEFY*Q*STHSELK*IF*RQQ*P**IIFQKNQKAACSS*TAT*PTKSKAEGIGRTDGKRKNTK*QRIII*TPGRTSKTKAGHFKAL*GFNSFTSDSRMVPF*FRHRSYNSKRKS*DRTTSIYSGP*ALYLSSPETCSVSSLHGLYMSCRSLIVCL*GSCTHCKCHEANYSSV*DCERTPAGKTAVTFGWN*LQ*RRYILGWCLGSVFLNLHATRYFSRRITGSSSRRSHGGRNSG**CRCDSW*L**LPSTVLSSVAGNYR*TFDT*HNRCTSSVLFGKR*RN*P*VTSGSNGS*H*SFRY*FGKGPSCSQGF*ANKQYMV*LLGC*LWDLQLQPLHWRSGNSCSKATSKHGEERITDS*RFSLSGPGCSPRSWT*TASRTDVENDVYSGGRFHFTGINKYISYIITVSHWNR*FTSRGFTSSKPNQPAYYTVIICPNVKCLFQQTFFHASSPSCSVGVTSPIVAHTEPEF*FNWKQRKWSRHIFI*C**DTCYFIKSSINN*LSHSVSLVSQYFAPDMVPCAS*PNTHDKHAA*FWFQQCHWNSGEYCSFVGFRSKPNSCISEISFWHQSTWNKSTQSTGWSYSYTSYARISYSITSASFFNMSSDIQ*IFAQANSYTFN*KGCFPDRPRTSRCPSEALRIHSGAEF*SRFS*YYFCRDRIGYIFSAPLYHLLRQSNVKKWIR*LRGCSSMLWGTLCQSYSSG*CKSSLWRNDKRSTHV*FVKTC*HFSAAASFRQ*GIQCKSVCDHKYNR*CFR*RKSLRRQRWQWKQYQCSRIACICC*LSLSQPTNYEPDFVCSGPV**QCHGNDNWSKWITSH*T*KLSWWVGCHISWGWIIYHTDNP**KSFYSPHDAAANFNIHGLWIYGQTRLSCYLPVI*AIIVVHFESIGY**CLESIS*YGWCSAHMQ*YGY*YKGYCEHCKKYGINYYEIS*LWSK*SC*QHIENKNTSF*A*QC*RDS*LCTPRYNHI*QSYCPTS*SAIAGHTSSQKSSLCCLVLHLSSRGGLV*PYHSPSCSSAA*GDTYPASSCISCNLPFLSVC*SKCRWGKYATFVHSCCHKWPHLHKNSACKSRSSFCCLP*TTSSTGCQHIRPFTN*IIGAHCFWYHLFCNS**SIPSI*RSGIQNKYWMVTVITSLPYSHK*SRRNDGKCSCTYC*SAADLCGLIDVTLLWNAFTQHRGCACKDRTAVY*NWPEAHRHSPEKLCSIRQ*SYRFE*SFTFWKTKWTLF*LYDRYSLPAWNNSGSWYKRQNSGLVKMG**FCKSGCYEEKWQDELHVS*LLNSRVWSSDAISFSFALCSSHSVA*L*AACRI*LTSTPGPRAL*VTF*LVHVSSLQYGFEESC*QSTLLNVSRTPKLFFFAHGLDGNYPSSSAMSS*TVHDR**QKAGS*FIFNR*L*KCTSTSRIN*ITFGYPCFLFSIS*SY*TITRLRFAFSSCEESG*FLL*PHF*LRKHCPVNRYFPGQTQAPSCPTTM**DAYHSRPSCSYS*VFDRSWQ*PYYERLAWWF*SQSTMDSTSVFIVSLWVHFWKP*FRCTTDQCKISFSFFSCYNRTDYSTAHSN*ECNCCVLSTVHFMPS**SKADGTGSL*TISDISSKREPSNIWEHFRVYTKIIFTVDAGR*ESDNVSSVSMSTVQR*N*CY*PRHPASNVWSRPQIPYSSFASLNNIIRCS*QSVRYSKYHS*IN**TKR*QRKEKP*RERKS*SGKWISRQLQCCCCLWAEVSI*TCCVSYTTSPTIQEGEDNT**NRKYFRSRGCQQNNYCPSVSPVSQTLGRPAIAS*NDTCPAFNSPI*PKTSSGLPLNRSDC*IGIKSYNRPQSIKNRFL*KTTP*KRSWRLTC*LSRR*GSHSR**MHGWDTG*IFA*NLSNSVTITSFCRNGWTGSYC*KTTHAISRSNSTGECSSCNIYHSGKAEG*RSV*MGDH*TVRGVSL*STRNCCG*TSTYQVSSTDHVSHTCPFFGCFWIISSSSGLCGSATEREKTCPVPSSIGIGSDR*WRRKSYSSISISQCASNPSFPRPS*LV*HYTFDN**WCTSKADGIGNWSLTPHSCLSLCFEPPFPTSSKL*RESN*ATGVKLS*PYINRRTTVILGQRDWLWNRLYSFWVGCGTSLN*AKAGRGTCYLPSAGSCQLHKSRQ*CGKWRSSVIS*D*RAEQ*CPSFCTSRASQSVLPHPSHVILSTK*FSSGHGKTCATLSGTAGIASGHCFLCCHGAPIVAPFYRER*RGRRTVRMSNFCWYIVSQNEDLC*YLYQPFKI*KGKC*NRSKTRCV*SRTRRTYSFGTRHPKDC*DSLCSHHQFAASKSGKKTG*ILQEGGYETQTFVSIKVT*RKICGCYEEITV*YV*NGF*R*RWEIGI*SKLPLHVSGEKC**CEQCCQSSPPCPGSCDAFNLTASVFIL*CVCTL**GAT*YHEGSNNWSSGHPLCKWLL*V*CVFSSRLSQFTPSCESRDNWWS*RAIQSKPL**WQGLFKHLKHVAWKTRREVESSDLKLFASVGVCPVPYISS*ALF**TGI*TV*RHSQWHTEFSRI*WKHSTSNS*VGNARTNQKPFTMF*RGNTQTFLLEKS*DNGPM*GVDCGYPAVQQ**AGRQDYVSPCSSSQASHCSAPRRVAETSLP*RLGS*H*RCPRGVQSHNRC*GDSNA*SG*TQQQQRTPQ*LPVM FALSE FALSE NA NA TRUE hsa-mir-558 chr2:32532153-32532246:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE F-box protein 11 1 Yes DLBCL leukaemia_lymphoma TSG missense, frameshift, large_deletion TRUE baculoviral IAP repeat containing 6 2 melanoma, gastric adenocarcinoma, lung adenocarcinoma epithelial oncogene, fusion translocation, missense 29854 AKNA::FBXL20 ENSG00000106948.17::ENSG00000108306.13 REC1 SRR8615594 SRR8670758 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (mantle_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 841 FALSE NA FALSE NA AKNA ENSG00000106948.17 protein_coding - - chr9:114334156-114394405:- chr9:114374093:- chr9:117096436-117156685:- chr9:117136373:- FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39299084:- chr17:37408916-37558776:- chr17:37455337:- chr9:114369066,chr9:114369072 chr17:39300654,chr17:39300657 NA NA chr9:117131346,chr9:117131352 chr17:37456907,chr17:37456910 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF6468|456-469|1.2^AKNA|598-696|4.2e-45^DUF6468-PARTIAL|1396-1416~|1.3e-06 LRR_4-PARTIAL|~235-236|0.0013^LRR_6-PARTIAL|~235-243|0.00086^Hpt|238-275|0.11^LRR_4|248-289|7.9e-06^LRR_1|248-269|0.26^LRR_6|255-268|1.6^LRR_6|273-295|0.073^LRR_8|273-337|0.0019^LRR_1|275-285|5.9^Hpt|289-314|0.0023^LRR_4|301-340|1e-05^LRR_6|301-315|3.8^LRR_1|301-309|8^LRR_6|323-346|7.9e-06^LRR_1|326-340|0.0026^LRR_4|355-393|3.2e-05^LRR_8|355-386|0.028^LRR_1|355-374|0.038^LRR_6|356-375|0.59^F-box_4|372-382|2.1^LRR_6|378-398|0.22^LRR_1|380-390|3.1 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr17] 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1356 GT 1.7056 AG 1.7232 ENST00000307564.8 1-1416 ENST00000583610.5 235-1311 chr9|-|[2]114374093-114374167[0]|[2]114376466-114377532[1]|[0]114381060-114381333[0]<==>chr17|-|[2]39261460-39261567[0]|[2]39264175-39264387[0]|[2]39265397-39265453[0]|[2]39268827-39268871[0]|[2]39270796-39270856[2]|[1]39274970-39275100[0]|[2]39281389-39281463[0]|[2]39282729-39282855[2]|[1]39285478-39285573[2]|[1]39297127-39297195[2]|[1]39298990-39299084[0] atggccagctcggagactgagatccgctgggctgagcctggcctggggaagggcccccagcggcggcgctgggcctgggccgaggacaagagggatgtggatagaagtagttcacaaagctgggaagaagagagactctttcccaatgccaccagccccgagctcctagaggacttccgcctggcccagcagcacctgccgcccctggagtgggacccacacccgcagcccgatgggcatcaggattccgagtcaggagagacttcgggagaagaggctgaagcagaggatgtggacagcccagcaagttcccatgagcctcttgcctggctcccccagcagggccgtcagctggacatgactgaagaggagccagatgggaccctcggaagtctggaggttgaggaggctggagagagctcctcaaggttggggtatgaggctggtctcagcttggaaggccatggaaacaccagccccatggctcttgggcatggtcaggccaggggctgggtggcttctggcgaacaagccagtggggacaaactttctgaacattccgaggtcaacccatccgttgaactcagcccggcaaggtcctggagcagtgggacagtgagcctcgaccaccctagtgacagccttgattctacctgggaaggagagaccgatggcccccagcccactgccctggcagaaaccttgccagagggccccagccaccacctcctaagcccagatggcagaactggaggcagtgttgctcgggcaacccccatggaattccaggactcctcagctcccccagcccagagtccgcagcatgccacagatagatggaggagagaaacgaccagattcttctgccctcagcccaaggaacacatctggaagcagacaaagacgtcacctaagccactcccttcccgattcattggctccatcagccccctgaatccccagcccaggccaacgcggcagggcaggccgctgcccagacagggagccactctggctggccgctcctcttctaatgcccccaagtatggccgggggcagttgaactacccactccctgatttctccaaggtagggccccgggtgagattccccaaagatgagagctaccgtccccccaagtccagaagccacaacaggaagcctcaggcccctgccaggcccctcatcttcaagtctccagctgagattgtgcaggaggtgctgttgagcagtggagaagcagccctggcaaaggacacgcctcctgcccaccctatcaccagggtaccccaagaatttcagacgcctgagcaagccactgagctggtccatcagctccaggaagactaccacaggctcctcaccaagtacgctgaggccgagaacaccattgaccagctacgcctcggggccaagGGCCGAGTAGTGGAGAATATTTCAAAACGATGTGGGGGCTTTTTACGAAAGTTAAGTCTTCGTGGATGTCTTGGAGTGGGAGACAATGCATTAAGAACCTTTGCACAAAACTGCAGGAACATTGAAGTACTGAATCTAAATGGGTGTACAAAGACAACAGACGCTACATGTACTAGCCTTAGCAAGTTCTGTTCCAAACTCAGGCACCTTGACTTGGCTTCCTGTACATCAATAACAAACATGTCTCTAAAAGCTCTGAGTGAGGGATGTCCACTGTTGGAGCAGTTGAACATTTCCTGGTGTGACCAAGTAACCAAGGATGGCATTCAAGCACTAGTGAGGGGCTGTGGGGGTCTCAAGGCCTTATTCTTAAAAGGCTGCACGCAGCTAGAAGATGAAGCTCTCAAGTACATAGGTGCACACTGCCCTGAACTGGTGACTTTGAACTTGCAGACTTGCTTGCAAATCACAGATGAAGGTCTCATTACTATATGCAGAGGGTGCCATAAGTTACAATCCCTTTGTGCCTCTGGCTGCTCCAACATCACAGATGCCATCCTGAATGCTCTAGGTCAGAACTGCCCACGGCTTAGAATATTGGAAGTGGCAAGATGTTCTCAATTAACAGATGTGGGCTTTACCACTCTAGCCAGGAATTGCCATGAACTTGAAAAGATGGACCTGGAAGAGTGTGTTCAGATAACAGATAGCACATTAATCCAACTTTCTATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCTCACTGTGAGCTGATCACAGATGATGGAATTCGTCACCTGGGGAATGGGGCCTGCGCCCATGACCAGCTGGAGGTGATTGAGCTGGACAACTGCCCACTAATCACAGATGCATCCCTGGAGCACTTGAAGAGCTGTCATAGCCTTGAGCGGATAGAACTCTATGACTGCCAGCAAATCACACGGGCTGGAATCAAGAGACTCAGGACCCATTTACCCAATATTAAAGTCCACGCCTACTTCGCACCTGTCACTCCACCCCCATCAGTAGGGGGCAGCAGACAGCGCTTCTGCAGATGCTGCATCATCCTATGA MASSETEIRWAEPGLGKGPQRRRWAWAEDKRDVDRSSSQSWEEERLFPNATSPELLEDFRLAQQHLPPLEWDPHPQPDGHQDSESGETSGEEAEAEDVDSPASSHEPLAWLPQQGRQLDMTEEEPDGTLGSLEVEEAGESSSRLGYEAGLSLEGHGNTSPMALGHGQARGWVASGEQASGDKLSEHSEVNPSVELSPARSWSSGTVSLDHPSDSLDSTWEGETDGPQPTALAETLPEGPSHHLLSPDGRTGGSVARATPMEFQDSSAPPAQSPQHATDRWRRETTRFFCPQPKEHIWKQTKTSPKPLPSRFIGSISPLNPQPRPTRQGRPLPRQGATLAGRSSSNAPKYGRGQLNYPLPDFSKVGPRVRFPKDESYRPPKSRSHNRKPQAPARPLIFKSPAEIVQEVLLSSGEAALAKDTPPAHPITRVPQEFQTPEQATELVHQLQEDYHRLLTKYAEAENTIDQLRLGAKGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29856 RPSA2::ENSG00000288011 ENSG00000288920.1::ENSG00000288011.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE FALSE TRUE 842 FALSE NA FALSE NA RPSA2 ENSG00000288920.1 protein_coding + + chr19:23762944-23871162:+ chr19:23763134:+ chr19:23945746-24053964:+ chr19:23945936:+ ENSG00000288011 ENSG00000288011.1 lncRNA - - chr10:62339553-62375166:- chr10:62354647:- chr10:64099312-64134925:- chr10:64114406:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 1061 203 1061 203 ONLY_REF_SPLICE YES_LDAS 14.1374 GT 1.6895 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29858 UACA::ARID1A ENSG00000137831.15::ENSG00000117713.21 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 844 TRUE 1483 TRUE 577 UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70664662:- chr15:70946893-71055897:- chr15:70957001:- ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26767790:+ chr1:27019727-27108595:+ chr1:27094281:+ chr15:70661211,chr15:70661427,chr15:70661436 chr1:26767420,chr1:26767364,chr1:26767354 NA NA chr15:70953550,chr15:70953766,chr15:70953775 chr1:27093911,chr1:27093855,chr1:27093845 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|37-84|8.6e-08^Ank_2|38-125|1.3e-15^Ank|38-63|0.53^Ank_3|38-61|0.98^Ank_5|54-99|0.0042^Ank_3|67-95|0.0011^Ank|68-97|0.0017^Ank_4|78-121|5.6e-09^Ank_2|79-164|9.2e-18^Ank_5|90-127|1.7e-07^Ank|101-125|1.9e-06^Ank_3|101-126|0.0001^Ank_2|107-197|4.2e-19^Ank_5|131-174|4.9e-08^Ank|133-164|7.8e-09^Ank_3|134-162|0.00041^Ank_4|135-187|1.5e-10^Ank_2|164-228|5e-15^Ank|166-198|9.6e-09^Ank_3|166-194|4.7e-06^Ank_4|182-208|9.6e-05^Ank_5|186-233|2e-09^Ank|200-230|1.4e-06^Ank_3|200-227|8.2e-07^Ank_4|201-251|0.0006^Filament|268-368|0.0012^ATG16|272-348|9^Lebercilin|291-373|9^Lebercilin|435-510|0.38^Filament|438-575|0.37^ATG16|455-564|0.0044^Lebercilin|490-614|0.047^Lebercilin|535-718|9^ATG16|558-622|0.17^Filament|608-889|0.00035^ATG16|626-681|5.8^Pox_A_type_inc|662-672|0.45^ATG16|672-800|0.19^Lebercilin|703-731|0.033^Lebercilin|732-825|1.2^ATG16|752-898|7e-07^Pox_A_type_inc|812-829|0.00056^Lebercilin|825-919|0.00053^ATG16|872-978|0.0093^Filament|876-1092|0.0011^Lebercilin|926-979|0.0048^Lebercilin|996-1095|8.8^ATG16|1001-1091|0.062^Lebercilin|1044-1158|9^ATG16|1069-1221|0.2^Filament|1082-1215|0.046^Filament|1177-1257|0.00031^Lebercilin|1192-1376|8.7e-09^Pox_A_type_inc|1199-1208|5^Filament|1228-1380|0.0061^ATG16|1239-1379|0.67^Ank_2|1254-1283|7.4^Pox_A_type_inc|1300-1309|1.1^Pox_A_type_inc|1357-1373|0.017 BAF250_C-PARTIAL|~1840-1848|4.3e-126 ["ARID1A:FoundationOne_panel","ARID1A:Oncogene","ARID1A:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr1] 72 39 72 37.38 ONLY_REF_SPLICE YES_LDAS 1.2234 GT 1.8256 AG 1.8062 ENST00000322954.11 1-4113 ENST00000374152.7 1840-5709 chr15|-|[2]70664662-70664814[0]|[2]70666724-70669462[0]|[2]70671039-70671091[1]|[0]70671965-70672001[0]|[2]70676493-70676591[0]|[2]70677108-70677140[0]|[2]70678099-70678206[0]|[2]70679608-70679676[0]|[2]70682758-70682795[1]|[0]70684265-70684446[2]|[1]70687540-70687646[0]|[2]70687750-70687820[1]|[0]70690454-70690511[0]|[2]70691299-70691363[1]|[0]70695017-70695105[2]|[1]70699527-70699660[0]|[2]70763330-70763407[0]<==>chr1|+|[0]26767790-26767999[2]|[0]26771119-26771326[0]|[1]26772500-26772632[1]|[2]26772812-26772987[0]|[1]26773346-26773496[1]|[2]26773580-26773717[1]|[2]26773802-26773898[2]|[0]26774329-26775220[0]|[1]26775577-26775707[2]|[0]26779023-26780756[2] atgaagagcctcaagtcccgcctgaggaggcaggacgtgcccggccccgcgtcgtctggcgccgccgccgccagcgcgcatgcagcagattggaataaatatgatgaccgattgatgaaagcagcagaaaggggggatgtagaaaaagtgacctcaatccttgctaaaaagggggtcaatccaggcaaactagatgtggaaggcagatctgtcttccatgttgtgacctcaaaggggaatcttgagtgtttgaatgccatccttatacatggagttgatattacaaccagtgacactgcagggagaaatgctcttcacctggctgctaagtatggacatgcattgtgcctacaaaaacttctacagtacaattgtcccactgagcatgcagacctgcagggaagaactgcacttcacgatgccgcaatggcagattgtccttctagcatacagctgctttgtgaccatggggcctctgtgaatgccaaagatgtagacgggcggacaccacttgttctggctactcagatgagtaggccaacaatatgtcaactgctgatagatagaggagcggatgttaattccagagacaaacaaaacagaactgccctcatgctaggttgcgaatatggttgcagagatgcagtagaagtcttaattaaaaatggtgctgatataagcttgctggatgcgcttggccatgatagttcttactatgcaagaattggtgacaatctggacattctaaccttgttgaagactgcatcggaaaataccaacaaagggagagaactttggaagaaagggccatctttgcaacagcgaaatttgacacacatgcaagatgaagtaaatgtgaagtcacatcagagggagcatcaaaatattcaggatttggagattgaaaatgaagatttgaaagagaggttgagaaaaattcagcaagaacaaagaatacttttggataaagtcaatggtttacagttacagctgaatgaggaagttatggttgctgatgatctggaaagcgagagagaaaagctgaagtcccttttggcagctaaagaaaagcaacatgaagaaagcttaaggactattgaggctctgaaaaatagatttaaatattttgagagtgatcatttaggatcaggaagtcatttcagtaaccgaaaagaagatatgcttcttaaacaaggtcagatgtatatggcagactcacagtgtacttccccaggtataccagcccatatgcaaagcagatctatgttaagacctctggaactatctttacccagtcaaacgtcatactctgaaaatgaaattttaaagaaagagttagaagcaatgcgaactttctgtgagtcagcaaaacaagaccgactgaagctccaaaatgaactggcacacaaagtggcagaatgcaaagctttagcattagaatgtgaaagggtcaaggaggattcagatgaacagataaagcaattagaagatgcattaaaagatgtgcagaagaggatgtatgagtcagaaggtaaagttaaacaaatgcagacccattttcttgcccttaaagaacacttaacaagtgaagcagcctcagggaatcacagactaaccgaggaactgaaggatcagttgaaagacttgaaagtaaaatatgaaggtgcttcagcagaagtggggaaattaagaaaccaaatcaaacaaaatgagatgatagtagaagagtttaagagggatgaaggcaagctgatagaagaaaataagcgattacagaaggaacttagtatgtgtgaaatggagcgagagaagaaaggaagaaaggtcacagagatggaaggccaggcaaaagaattgtcagcgaagttggccctttccattccagctgaaaaatttgaaaacatgaagagctcattatcaaatgaagtgaatgagaaagcaaaaaaattagtagaaatggaaagagaacatgaaaaatcacttagtgaaattagacagttaaagagagaacttgagaatgttaaggccaagcttgctcagcacgtcaaaccagaggaacatgaacaggttaagagcagattagaacagaaatcaggagaacttgggaagaagatcactgagttaacattgaaaaatcagacactacaaaaggaaattgaaaaagtttatttggataataagctcctcaaggagcaagcacataacttaacaattgaaatgaaaaatcattatgttcctttaaaagtaagtgaagacatgaaaaagtcacatgatgcaattattgatgatcttaatagaaagcttttagatgtaacacaaaaatatacagaaaagaagttggaaatggagaaattgctactggaaaatgacagcttaagtaaggatgtaagccgcctagaaactgtgtttgtacctcctgagaaacatgaaaaagagataatagctctgaaatccaatattgttgaacttaagaaacagctgtctgaacttaagaaaaaatgtggtgaagaccaggagaaaatacacgctctcacatctgaaaacactaacttgaagaagatgatgagtaatcagtatgtgccagttaaaacccatgaagaggttaaaatgacactgaatgacacgttagccaaaactaacagagaattattagatgtgaagaaaaaatttgaagatataaatcaggaatttgtaaaaataaaagataagaatgaaatattaaaaagaaacctggaaaacactcagaaccaaataaaagctgagtacatcagcctggcagagcacgaggcaaagatgagctcgctaagtcagagcatgagaaaggtgcaggatagtaatgctgaaatcttggccaactacagaaaaggccaagaagagattgtgacactgcatgccgaaattaaagcccagaagaaggagctcgacacaatacaagaatgcattaaggtaaaatacgccccaattgtcagctttgaggagtgcgagagaaaatttaaagcaacagagaaagaactaaaagaccagttatcagagcagacacaaaagtatagtgtcagtgaagaagaagtcaagaaaaacaagcaagagaatgacaagttaaagaaggagatttttacccttcagaaagatttgagagataagacagttctcattgagaagtctcatgaaatggaaagagcattaagcagaaaaacagacgagctaaacaaacagttaaaagacttgtcacagaaatacacggaagtaaagaatgtgaaagagaagctagtagaagaaaatgccaaacagacttctgagatacttgcagtgcaaaatcttttgcaaaaacaacatgttccattggaacaggttgaggctctgaaaaaatctcttaatggcacaattgaaaatctaaaggaagaactgaagagtatgcaaaggtgttacgagaaagagcagcagacagtgaccaaactgcatcaattgttggagaatcaaaagaactcttctgtacccctggcagagcatttgcagattaaagaagcatttgagaaagaagttggaatcataaaagccagcttgagagaaaaggaagaagaaagccaaaacaaaatggaagaagtctccaaacttcagtcggaggttcagaatactaaacaagcattaaaaaaattagagactagagaggtagttgacttgtctaaatataaagcaacaaaaagtgatttggagacacagatttctagcttaaatgaaaaattggccaatctgaatagaaagtatgaggaagtatgtgaggaagttttgcatgccaaaaagaaggaaatatctgcaaaagatgagaaggaattactgcatttcagcattgagcaagaaattaaggatcagaaggaacgatgtgataagtccttaacaacaatcacagagttacaaagaagaatacaagaatctgctaaacaaatagaagcaaaagataataagataactgaactgcttaatgatgtggaaagattaaaacaggcactcaatggcctttcccaactcacctacacaagtgggaaccccaccaagaggcagagccagctgattgacactctgcagcaccaagtgaaatctctggagcaacagctggccAAATCCAGTTCTTCTACTACAACCAATGAGAAGATCACCAAGTTGTATGAGCTGGGTGGTGAGCCTGAGAGGAAGATGTGGGTGGACCGTTATCTGGCCTTCACTGAGGAGAAGGCCATGGGCATGACAAATCTGCCTGCTGTGGGTAGGAAACCTCTGGACCTCTATCGCCTCTATGTGTCTGTGAAGGAGATTGGTGGATTGACTCAGGTCAACAAGAACAAAAAATGGCGGGAACTTGCAACCAACCTCAATGTGGGCACATCAAGCAGTGCTGCCAGCTCCTTGAAAAAGCAGTATATCCAGTGTCTCTATGCCTTTGAATGCAAGATTGAACGGGGAGAAGACCCTCCCCCAGACATCTTTGCAGCTGCTGATTCCAAGAAGTCCCAGCCCAAGATCCAGCCTCCCTCTCCTGCGGGATCAGGATCTATGCAGGGGCCCCAGACTCCCCAGTCAACCAGCAGTTCCATGGCAGAAGGAGGAGACTTAAAGCCACCAACTCCAGCATCCACACCACACAGTCAGATCCCCCCATTGCCAGGCATGAGCAGGAGCAATTCAGTTGGGATCCAGGATGCCTTTAATGATGGAAGTGACTCCACATTCCAGAAGCGGAATTCCATGACTCCAAACCCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGCTCCAGGGAGTGATCCCTTCATGTCCTCAGGGCAGGGCCCCAACGGCGGGATGGGTGACCCCTACAGTCGTGCTGCCGGCCCTGGGCTAGGAAATGTGGCGATGGGACCACGACAGCACTATCCCTATGGAGGTCCTTATGACAGAGTGAGGACGGAGCCTGGAATAGGGCCTGAGGGAAACATGAGCACTGGGGCCCCACAGCCGAATCTCATGCCTTCCAACCCAGACTCGGGGATGTATTCTCCTAGCCGCTACCCCCCGCAGCAGCAGCAGCAGCAGCAGCAACGACATGATTCCTATGGCAATCAGTTCTCCACCCAAGGCACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAACAGCAACAGCAGAATTACAAGCGGCCAATGGATGGCACATATGGCCCTCCTGCCAAGCGGCACGAAGGGGAGATGTACAGCGTGCCATACAGCACTGGGCAGGGGCAGCCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCCCAGCCTTCCCCTCAGCAAGATGTATACAACCAGTATGGCAATGCCTATCCTGCCACTGCCACAGCTGCTACTGAGCGCCGACCAGCAGGCGGCCCCCAGAACCAATTTCCATTCCAGTTTGGCCGAGACCGTGTCTCTGCACCCCCTGGCACCAATGCCCAGCAAAACATGCCACCACAAATGATGGGCGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAAGGCACCATGTGGCAGGGGCGTAATGACATGACCTATAATTATGCCAACAGGCAGAGCACGGGCTCTGCCCCCCAGGGCCCCGCCTATCATGGCGTGAACCGAACAGATGAAATGCTGCACACAGATCAGAGGGCCAACCACGAAGGCTCGTGGCCTTCCCATGGCACACGCCAGCCCCCATATGGTCCCTCTGCCCCTGTGCCCCCCATGACAAGGCCCCCTCCATCTAACTACCAGCCCCCACCAAGCATGCAGAATCACATTCCTCAGGTATCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGGTCCCCCAGTACCTGCCTCGCACATAGCACCTGCCCCTGTGCAGCCCCCCATGATTCGGCGGGATATCACCTTCCCACCTGGCTCTGTTGAAGCCACACAGCCTGTGTTGAAGCAGAGGAGGCGGCTCACAATGAAAGACATTGGAACCCCGGAGGCATGGCGGGTAATGATGTCCCTCAAGTCTGGTCTCCTGGCAGAGAGCACATGGGCATTAGATACCATCAACATCCTGCTGTATGATGACAACAGCATCATGACCTTCAACCTCAGTCAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACGCTACTGGATCCTGGGAGGTTCAGCAAGGTGTCTAGTCCAGCTCCCATGGAGGGTGGGGAAGAAGAAGAAGAACTTCTAGGTCCTAAACTAGAAGAGGAAGAAGAAGAGGAAGTAGTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCCAGTAAAGATCGTACAGAAGAATGATCCATTTGTGGTGGACTGCTCAGATAAGCTTGGGCGTGTGCAGGAGTTTGACAGTGGCCTGCTGCACTGGCGGATTGGTGGGGGGGACACCACTGAGCATATCCAGACCCACTTCGAGAGCAAGACAGAGCTGCTGCCTTCCCGGCCTCACGCACCCTGCCCACCAGCCCCTCGGAAGCATGTGACAACAGCAGAGGGTACACCAGGGACAACAGACCAGGAGGGGCCCCCACCTGATGGACCTCCAGAAAAACGGATCACAGCCACTATGGATGACATGTTGTCTACTCGGTCTAGCACCTTGACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAACACCTTGGTTACACTCGCCAACATCTCGGGGCAGTTGGACCTATCTCCATACCCCGAGAGCATTTGCCTGCCTGTCCTGGACGGACTCCTACACTGGGCAGTTTGCCCTTCAGCTGAAGCCCAGGACCCCTTTTCCACCCTGGGCCCCAATGCCGTCCTTTCCCCGCAGAGACTGGTCTTGGAAACCCTCAGCAAACTCAGCATCCAGGACAACAATGTGGACCTGATTCTGGCCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACTATGGTGCGCTTCCTCAGTGACCGAAAGAACCCGGTGTGCCGGGAGATGGCTGTGGTACTGCTGGCCAACCTGGCTCAGGGGGACAGCCTGGCAGCTCGTGCCATTGCAGTGCAGAAGGGCAGTATCGGCAACCTCCTGGGCTTCCTAGAGGACAGCCTTGCCGCCACACAGTTCCAGCAGAGCCAGGCCAGCCTCCTCCACATGCAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGCTGCCCGCGCGCTGCTTGCCTTGGCCAAGGTGGACGAGAACCACTCAGAGTTTACTCTGTACGAATCACGGCTGTTGGACATCTCGGTATCACCGTTGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGA MKSLKSRLRRQDVPGPASSGAAAASAHAADWNKYDDRLMKAAERGDVEKVTSILAKKGVNPGKLDVEGRSVFHVVTSKGNLECLNAILIHGVDITTSDTAGRNALHLAAKYGHALCLQKLLQYNCPTEHADLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDVDGRTPLVLATQMSRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLIKNGADISLLDALGHDSSYYARIGDNLDILTLLKTASENTNKGRELWKKGPSLQQRNLTHMQDEVNVKSHQREHQNIQDLEIENEDLKERLRKIQQEQRILLDKVNGLQLQLNEEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKYFESDHLGSGSHFSNRKEDMLLKQGQMYMADSQCTSPGIPAHMQSRSMLRPLELSLPSQTSYSENEILKKELEAMRTFCESAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTSEAASGNHRLTEELKDQLKDLKVKYEGASAEVGKLRNQIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCEMEREKKGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLKNQTLQKEIEKVYLDNKLLKEQAHNLTIEMKNHYVPLKVSEDMKKSHDAIIDDLNRKLLDVTQKYTEKKLEMEKLLLENDSLSKDVSRLETVFVPPEKHEKEIIALKSNIVELKKQLSELKKKCGEDQEKIHALTSENTNLKKMMSNQYVPVKTHEEVKMTLNDTLAKTNRELLDVKKKFEDINQEFVKIKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEILANYRKGQEEIVTLHAEIKAQKKELDTIQECIKVKYAPIVSFEECERKFKATEKELKDQLSEQTQKYSVSEEEVKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKYTEVKNVKEKLVEENAKQTSEILAVQNLLQKQHVPLEQVEALKKSLNGTIENLKEELKSMQRCYEKEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLANLNRKYEEVCEEVLHAKKKEISAKDEKELLHFSIEQEIKDQKERCDKSLTTITELQRRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYTSGNPTKRQSQLIDTLQHQVKSLEQQLAKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFSKVSSPAPMEGGEEEEELLGPKLEEEEEEEVVENDEEIAFSGKDKPASENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVTTAEGTPGTTDQEGPPPDGPPEKRITATMDDMLSTRSSTLTEDGAKSSEAIKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation 29860 ZNF431::GSS ENSG00000196705.8::ENSG00000100983.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF431 ENSG00000196705.8 protein_coding + + chr19:21142024-21196053:+ chr19:21143643:+ chr19:21324827-21378856:+ chr19:21326446:+ GSS ENSG00000100983.12 protein_coding - - chr20:34928432-34956027:- chr20:34951860:- chr20:33516235-33543830:- chr20:33539663:- chr19:21145261 chr20:34955652 NA NA chr19:21328064 chr20:33543455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr20] 55 28 55 28 ONLY_REF_SPLICE YES_LDAS 0.9284 GT 1.6895 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29861 WDFY2::SERPINE3 ENSG00000139668.9::ENSG00000253309.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 847 TRUE 1486 TRUE 579 WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51660663:+ chr13:52158591-52341845:+ chr13:52234799:+ SERPINE3 ENSG00000253309.7 protein_coding + + chr13:51335773-51364735:+ chr13:51355043:+ chr13:51909909-51938871:+ chr13:51929179:+ chr13:51674460,chr13:51674455 chr13:51348720,chr13:51348712 NA NA chr13:52248596,chr13:52248591 chr13:51922856,chr13:51922848 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NBCH_WD40|24-65|0.081^WD40|32-51|0.00046^Nucleoporin_N|37-53|0.83^ANAPC4_WD40|49-122|0.00033^WD40|69-92|0.027^WD40|105-136|0.016^NBCH_WD40|105-147|0.12^A24_N_bact|140-152|9^ANAPC4_WD40|157-189|0.23^WD40|159-179|5.1^ANAPC4_WD40-PARTIAL|176-205~|0.0001^WD40-PARTIAL|190-205~|1.1e-12^Nucleoporin_N-PARTIAL|201-205~|0.0065 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.22Mb] 53 20 53 15.89 ONLY_REF_SPLICE YES_LDAS 0.7705 GT 1.9329 AG 1.8892 ENST00000298125.7 1-205 ENST00000521255.5 900-1275 chr13|+|[0]51584688-51584824[1]|[2]51660596-51660663[0]<==>chr13|+|[2]51355043-51355143[0]|[1]51361278-51361364[0]|[1]51361810-51361997[2] atggcggcggagatccagcccaagcctctgacccgcaagccgatcctgctgcagcggatggaggggtcccaggaggtggtgaatatggccgtgatcgtgcccaaagaggagggcgtcatcagcgtctccgaggacaggacagttcgtgtttggttaaagagagacagtggacagtattggccaagcgtataccatgcaatgccttGTTTAGGATCCAAAATCAATTCAACTTAAAAAGCATTTTAAATTCTTGGGGAGTCACCGATCTTTTTGATCCACTCAAAGCTAACTTGAAAGGAATTTCAGGCCAAGATGGCTTTTATGTTTCTGAAGCAATCCACAAGGCCAAGATTGAAGTTTTGGAGGAAGGCACCAAGGCATCTGGAGCCACAGCTCTGTTGTTATTGAAAAGGTCTCGGATTCCTATTTTTAAAGCAGATCGGCCATTCATCTATTTCCTGAGAGAACCTAACACAGGTATTACAGTATTTTTTGACAGGATTCAGATAATTTATCAGTGTCTCTCTAGCAACAAGGGCTCATTTGTCCACTATCCCCTCAAAAATAAGCATTCTTTCTAG MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSVYHAMPCLGSKINST*KAF*ILGESPIFLIHSKLT*KEFQAKMAFMFLKQSTRPRLKFWRKAPRHLEPQLCCY*KGLGFLFLKQIGHSSIS*ENLTQVLQYFLTGFR*FISVSLATRAHLSTIPSKISILS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29862 WDFY2::SERPINE3 ENSG00000139668.9::ENSG00000253309.7 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 848 TRUE 1486 TRUE 579 WDFY2 ENSG00000139668.9 protein_coding + + chr13:51584455-51767709:+ chr13:51660663:+ chr13:52158591-52341845:+ chr13:52234799:+ SERPINE3 ENSG00000253309.7 protein_coding + + chr13:51335773-51364735:+ chr13:51361278:+ chr13:51909909-51938871:+ chr13:51935414:+ chr13:51674460,chr13:51674455 chr13:51348720,chr13:51348712 NA NA chr13:52248596,chr13:52248591 chr13:51922856,chr13:51922848 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NBCH_WD40|24-65|0.081^WD40|32-51|0.00046^Nucleoporin_N|37-53|0.83^ANAPC4_WD40|49-122|0.00033^WD40|69-92|0.027^WD40|105-136|0.016^NBCH_WD40|105-147|0.12^A24_N_bact|140-152|9^ANAPC4_WD40|157-189|0.23^WD40|159-179|5.1^ANAPC4_WD40-PARTIAL|176-205~|0.0001^WD40-PARTIAL|190-205~|1.1e-12^Nucleoporin_N-PARTIAL|201-205~|0.0065 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.22Mb] 44 10 44 4.11 ONLY_REF_SPLICE YES_LDAS 0.5381 GT 1.9329 AG 1.9656 ENST00000298125.7 1-205 ENST00000521255.5 1001-1275 chr13|+|[0]51584688-51584824[1]|[2]51660596-51660663[0]<==>chr13|+|[1]51361278-51361364[0]|[1]51361810-51361997[2] atggcggcggagatccagcccaagcctctgacccgcaagccgatcctgctgcagcggatggaggggtcccaggaggtggtgaatatggccgtgatcgtgcccaaagaggagggcgtcatcagcgtctccgaggacaggacagttcgtgtttggttaaagagagacagtggacagtattggccaagcgtataccatgcaatgccttGCCAAGATGGCTTTTATGTTTCTGAAGCAATCCACAAGGCCAAGATTGAAGTTTTGGAGGAAGGCACCAAGGCATCTGGAGCCACAGCTCTGTTGTTATTGAAAAGGTCTCGGATTCCTATTTTTAAAGCAGATCGGCCATTCATCTATTTCCTGAGAGAACCTAACACAGGTATTACAGTATTTTTTGACAGGATTCAGATAATTTATCAGTGTCTCTCTAGCAACAAGGGCTCATTTGTCCACTATCCCCTCAAAAATAAGCATTCTTTCTAG MAAEIQPKPLTRKPILLQRMEGSQEVVNMAVIVPKEEGVISVSEDRTVRVWLKRDSGQYWPSVYHAMPCQDGFYVSEAIHKAKIEVLEEGTKASGATALLLLKRSRIPIFKADRPFIYFLREPNTGITVFFDRIQIIYQCLSSNKGSFVHYPLKNKHSF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29863 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 849 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58363609:+ chr10:60094739-60130511:+ chr10:60123369:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame V-SNARE|12-90|7.9e-29^Mer2|12-62|0.00043^DUF6730|15-55|0.31^MetOD2|20-58|0.0022^FapA|30-89|0.00031^Sec20|34-54|0.83^DUF745|34-57|0.0017^Exonuc_VII_L|34-171|0.00078^DUF1664|35-86|0.00036^V-SNARE_C|36-56|1^Laminin_II|36-84|0.032^Sec8_N|36-61|0.055^PCRF|36-89|0.007^Spc7|37-81|0.0071^DUF5344|39-89|0.00041^DegQ|42-61|0.00071^Mer2|73-161|0.02^DegQ|77-89|3.5^DUF6730|77-123|0.57^V-SNARE|96-124|3.6^PCRF|107-195|0.0092^FapA|110-177|0.01^DUF1664|114-171|0.075^MetOD2|116-177|0.0059^DUF745|116-194|0.017^Spc7|122-173|0.0083^V-SNARE_C|123-187|8.2e-24^DUF6730|123-179|0.0014^Adhesin_P1_C|128-201|6.2e-05^Sec20|131-199|7e-05^Laminin_II|136-181|3.8e-05^DUF5344|142-176|0.2^Sec8_N|148-191|0.0029^V-SNARE|157-171|1.6 UQ_con-PARTIAL|~121-141|5.8e-59 ["VTI1A:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:54.08Mb] 37 14 37 10.86 ONLY_REF_SPLICE YES_LDAS 0.5353 GT 1.9086 AG 1.9899 ENST00000432306.5 1-264 ENST00000373910.9 121-444 chr10|+|[0]112447374-112447467[0]|[1]112460524-112460582[2]|[0]112464547-112464657[2]<==>chr10|+|[0]58363609-58363686[2]|[0]58364771-58364876[0]|[1]58367923-58368016[1]|[2]58368720-58368765[2] atgtcgtccgacttcgaaggttacgagcaggacttcgcggtgctcactgcagagatcaccagcaagattgcgagggtcccacgactcccgcctgatgaaaagaaacagatggttgcaaatgtggagaaacagcttgaagaagcgaaagaactgcttgaacagatggatttggaagtccgagagataccaccccaaagtcgagggatgtacagcaacagaatgagaagctacaaacaagaaatgggaaaactcgaaacagattttCCTGATAGCGCATATCAAGGTGGAGTCTTCTTTCTCACTGTACATTTTCCGACAGATTATCCTTTTAAACCACCAAAGATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGTCTCGATATTCTGAGGTCACAATGGTCACCAGCTCTGACTGTATCAAAAGTTTTATTGTCCATATGTTCTCTACTTTGTGATCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAAATCTATAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTCAGAAATATGCAATGTAA MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29864 PACSIN2::MCAT ENSG00000100266.19::ENSG00000100294.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 852 TRUE 1488 TRUE 581 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- MCAT ENSG00000100294.13 protein_coding - - chr22:43132209-43143398:- chr22:43133486:- chr22:43528215-43539404:- chr22:43529492:- chr22:42984939,chr22:42984945 chr22:43140513,chr22:43140516 NA NA chr22:43380945,chr22:43380951 chr22:43536519,chr22:43536522 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PACSIN2:Oncogene"];["TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.12Mb] 35 10 35 5.3 ONLY_REF_SPLICE YES_LDAS 0.4508 GT 1.7232 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 43411027 TRUE 43537255 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29865 PSEN1::RBM25 ENSG00000080815.20::ENSG00000119707.14 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 855 FALSE NA FALSE NA PSEN1 ENSG00000080815.20 protein_coding + + chr14:73136418-73223691:+ chr14:73136583:+ chr14:73603126-73690399:+ chr14:73603291:+ RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73076319:+ chr14:73525240-73590607:+ chr14:73543027:+ chr14:73138723,chr14:73138719,chr14:73138720 chr14:73074283,chr14:73074276,chr14:73074280 NA NA chr14:73605431,chr14:73605427,chr14:73605428 chr14:73540991,chr14:73540984,chr14:73540988 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_REARRANGEMENT:+:[12520] 35 13 35 11.8 ONLY_REF_SPLICE YES_LDAS 0.5235 GT 1.7232 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29868 CROCCP2::ABCC1 ENSG00000291072.1::ENSG00000103222.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 865 FALSE NA FALSE NA CROCCP2 ENSG00000291072.1 lncRNA - - chr1:16618253-16644686:- chr1:16644646:- chr1:16944748-16971181:- chr1:16971141:- ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16007816:+ chr16:16042995-16237114:+ chr16:16101673:+ chr1:16639055,chr1:16639055,chr1:16639063 chr16:15970396,chr16:15970400,chr16:15970388 NA NA chr1:16965550,chr1:16965550,chr1:16965558 chr16:16064253,chr16:16064257,chr16:16064245 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ABCC1:Oncogene"];["DepMap2023"];INTERCHROMOSOMAL[chr1--chr16] 33 1 33 0.85 ONLY_REF_SPLICE YES_LDAS 0.3786 GT 1.5329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29874 GBF1::WBP1L ENSG00000107862.7::ENSG00000166272.18 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 859 TRUE 1491 FALSE NA GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102358729:+ chr10:104005128-104142656:+ chr10:104118486:+ WBP1L ENSG00000166272.18 protein_coding + + chr10:102743948-102834516:+ chr10:102797993:+ chr10:104503705-104594273:+ chr10:104557750:+ chr10:102361156,chr10:102361157 chr10:102766640,chr10:102766638 NA NA chr10:104120913,chr10:104120914 chr10:104526397,chr10:104526395 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sec7-like_HDS|63-93|0.11^DUF758|115-162|6.4e-05^Sec7-like_HUS|151-190|2^DUF1045|422-462|5.7e-05^Sec7-like_HUS|435-584|2.1e-36^Sec7-like_HDS|522-561|0.47^Sec7|732-917|1.7e-72^Sec7-like_HDS|1045-1068|0.003 WBP-1-PARTIAL|~91-144|2.9e-50 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.36Mb] 26 7 26 3.64 ONLY_REF_SPLICE YES_LDAS 0.3315 GT 1.8295 AG 1.9086 ENST00000673650.1 1-1110 ENST00000448841.7 91-1092 chr10|+|[0]102258939-102259034[2]|[0]102260050-102260116[0]|[1]102344051-102344182[0]|[1]102351256-102351374[2]|[0]102351843-102351951[0]|[1]102352458-102352518[1]|[2]102353600-102353654[2]|[0]102354370-102354468[2]|[0]102358039-102358186[0]|[1]102358506-102358729[2]<==>chr10|+|[0]102797993-102798095[0]|[1]102809893-102810054[0]|[1]102812595-102813331[2] atggtggataagaatatttacatcattcaaggggagattaacattgtggttggggccatcaaacgaaatgcccgatggagcacccatacaccactggatgaagaacgggatcctctgctgcatagtttcggtcatctaaaggaggttttaaacagtataacagaactctcagaaattgagcccaatgtattccttcgaccttttctggaagtgattcgctctgaagataccactggccctatcactggactggcactcacctctgtcaacaagttcctgtcctatgcactcatagatcccacccatgagggcacagcagagggcatggagaacatggcagatgctgtcacccatgctcgttttgtgggcacggatcctgccagtgatgaagttgtcctgatgaaaatccttcaggttctacggactctgctgctaaccccagtgggtgcccacctaaccaatgaatctgtgtgtgagattatgcagtcttgcttccggatctgctttgaaatgaggctcagtgagttattgagaaaatccgcagagcacactctcgtagacatggtgcagctgctcttcacaaggttacctcagtttaaagaagaacccaagaactatgtggggaccaacatgaagaagatatctccatgtctcctcaacaaactggagctaagtagtggggagcagaccaaagccctgaaccagttagagagggtactactctttaagaacctcaagctgaaaatgagagccggaggcatgagtgattcatccaaatggaagaaacagaagagatcccctcggcccccacgccatatgaccaaagtcacaccaggttcagagctgcccactcccaatggaaccaccttatcatctaacctcactggtggcatgcccttcattgatgtgcccactcccatctcctctgcaagttcagaagctgcctcagcagtggtcagtccctctacagacagtggcctggaattctcctcccaaaccacttccaaggaagaccttactgatctagagcaacctggctctccagggtacagcacagctacagagcctggaagcagtgagctaggtgttcccgagcagcctgacctccagGATAAGGAAGCCTGTGTGGGTACCAACAATCAAAGCTACATCTGTGACACAGGACACTGCTGTGGACAGTCTCAGTGCTGCAACTACTACTATGAACTCTGGTGGTTCTGGCTGGTGTGGACCATCATCATCATCCTGAGCTGCTGCTGTGTTTGCCACCACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCAACCTGATCGCTTACCGAGAAGCCCACAATTACTCAGCGCTGCCATTTTATTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACCTCCAACTCCTCCCCCACCATACAGTGCCTTCCAGCTACAGCAGCAGCAGCTGCTGCCTCCACAGTGTGGCCCTGCAGGTGGCAGTCCCCCGGGCATCGATCCCACCAGGGGATCCCAGGGGGCACAGAGCAGCCCCTTGTCTGAGCCCAGCAGAAGCAGCACAAGACCCCCAAGCATCGCTGACCCTGATCCCTCTGACCTACCAGTTGACCGAGCAGCCACCAAAGCCCCAGGGATGGAGCCCAGTGGCTCTGTGGCTGGCCTGGGGGAGCTGGACCCGGGGGCCTTCCTGGACAAAGATGCAGAATGTAGGGAGGAGCTGCTGAAAGATGACAGCTCTGAACACGGCGCACCCGACAGCAAAGAGAAGACGCCTGGGAGACATCGCCGCTTCACAGGTGACTCGGGCATTGAAGTGTGTGTGTGCAACCGGGGCCACCATGACGATGACCTCAAAGAGTTCAACACACTCATCGATGATGCTCTGGATGGGCCCCTGGACTTCTGCGACAGCTGCCATGTGCGGCCCCCTGGTGATGAGGAGGAAGGCCTCTGTCAGTCCTCTGAGGAGCAGGCTCGAGAGCCTGGGCACCCGCACCTGCCACGGCCGCCCGCATGCCTGCTGCTGAACACCATCAACGAGCAGGACTCTCCCAACTCCCAGAGCAGCAGCTCCCCCAGCTAG MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITELSEIEPNVFLRPFLEVIRSEDTTGPITGLALTSVNKFLSYALIDPTHEGTAEGMENMADAVTHARFVGTDPASDEVVLMKILQVLRTLLLTPVGAHLTNESVCEIMQSCFRICFEMRLSELLRKSAEHTLVDMVQLLFTRLPQFKEEPKNYVGTNMKKISPCLLNKLELSSGEQTKALNQLERVLLFKNLKLKMRAGGMSDSSKWKKQKRSPRPPRHMTKVTPGSELPTPNGTTLSSNLTGGMPFIDVPTPISSASSEAASAVVSPSTDSGLEFSSQTTSKEDLTDLEQPGSPGYSTATEPGSSELGVPEQPDLQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPLSEPSRSSTRPPSIADPDPSDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGAPDSKEKTPGRHRRFTGDSGIEVCVCNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPGDEEEGLCQSSEEQAREPGHPHLPRPPACLLLNTINEQDSPNSQSSSSPS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29875 PACSIN2::MCAT ENSG00000100266.19::ENSG00000100294.13 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 853 TRUE 1488 TRUE 581 PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- MCAT ENSG00000100294.13 protein_coding - - chr22:43132209-43143398:- chr22:43137298:- chr22:43528215-43539404:- chr22:43533304:- chr22:42984939,chr22:42984945 chr22:43140513,chr22:43140516 NA NA chr22:43380945,chr22:43380951 chr22:43536519,chr22:43536522 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PACSIN2:Oncogene"];["TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.12Mb] 25 16 25 10.7 ONLY_REF_SPLICE YES_LDAS 0.3993 GT 1.7232 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 43411027 TRUE 43537255 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29877 ZNF365::GPR158-AS1 ENSG00000138311.18::ENSG00000233642.1 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 861 FALSE NA FALSE NA ZNF365 ENSG00000138311.18 protein_coding + + chr10:62374192-62480288:+ chr10:62374458:+ chr10:64133951-64240047:+ chr10:64134217:+ GPR158-AS1 ENSG00000233642.1 lncRNA - - chr10:25158072-25176276:- chr10:25159903:- chr10:25447001-25465205:- chr10:25448832:- chr10:62375988,chr10:62375990,chr10:62375987,chr10:62375987 chr10:25169339,chr10:25169337,chr10:25169339,chr10:25169340 NA NA chr10:64135747,chr10:64135749,chr10:64135746,chr10:64135746 chr10:25458268,chr10:25458266,chr10:25458268,chr10:25458269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:37.20Mb] 20 6 20 5 ONLY_REF_SPLICE YES_LDAS 0.2796 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29879 DCAF10::CENPP ENSG00000122741.16::ENSG00000188312.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 856 FALSE NA FALSE NA DCAF10 ENSG00000122741.16 protein_coding + + chr9:37800554-37867666:+ chr9:37819401:+ chr9:37800551-37867663:+ chr9:37819398:+ CENPP ENSG00000188312.15 protein_coding + + chr9:92325953-92620529:+ chr9:92379763:+ chr9:95088235-95382811:+ chr9:95142045:+ chr9:37833704 chr9:92352619 NA NA chr9:37833701 chr9:95114901 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RMC1_N|156-201|0.0004^WD40|166-194|0.0022^ANAPC4_WD40|166-215|1.2e-06^NBCH_WD40|166-200|0.46^WD40_like|171-245|4.3e-06^WD40|203-238|1.5e-07^NBCH_WD40|208-243|0.00056^RMC1_N|211-246|0.45^MIOS_WD40|230-279|3e-05^ANAPC4_WD40|240-283|0.0064^WD40|245-281|7.4e-10^NBCH_WD40|249-286|0.003^WD40|308-320|4.6^ANAPC4_WD40|406-429|0.63^WD40|408-422|0.52^ANAPC4_WD40|472-491|0.034^RMC1_N|472-488|0.21^WD40|475-489|0.012^NBCH_WD40|519-547|0.71^WD40|520-555|1.6e-05 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:54.46Mb] 19 18 19 18 ONLY_REF_SPLICE YES_LDAS 0.4138 GT 1.6895 AG 1.231 ENST00000377724.8 1-653 ENST00000375587.8 468-867 chr9|+|[0]37800867-37801405[1]|[2]37819288-37819401[1]<==>chr9|+|[2]92379763-92379859[2]|[0]92611314-92611393[1]|[2]92612523-92612614[0]|[1]92613019-92613149[2] atgtttccctttgggccccatagccctggaggggacggatcggccggagccggggctgaggagccgacgccccacgaggggcaggcagcagccaccgggccgccctcgccactacatcccggggctgatgcgacccatccccctccacccgcccgaagccctcgccgccccggcgccccatcgctgtccccggccccgcgctccggagagctagggctgcctggagctccggagtcctcaactgcctccgccccgggagagccgtcacctccctcccctccgtgccggcggcccgggccagactgcagggccaagagccggggccgacacggcctcggcgcgggcctgggcggccctggcgctaggctgttcgggtggctgaaagagcgcagcctgggccgcgggctgttcgtggacccggcgcgggacaattttcgcaccatgactagcctctacggttccatccaccccgcggactcggtgtacctcagcacccgcacccacggcgccgtcttcaacctcgagtactcgcccgacgggtcagtgctgacagttgcttgtgaacaaactgaagttctgctttttgaccctatatcttcaaagcacataaaaacactttctgaagctcatgaagactgtgtaaataatatcagAGCAGAAGAGAGAAAAGATCTGTTCATGTTTTTCCGAAGCCTGCATTTTTTTGTGGAGTGGTTTGAATATCGTAAGCGCACGTTTAAACATCTCAAGGAAAAGTACCCAGATGCCGTGTACCTCTCGGAGGGGCCCTCCTCCTGCTCCATGGGGATCCGCAGCGCCAGCCGGCCAGGGTTTGAATTAGTCATTGTTTGGAGGATACAAATAGATGAAGATGGGAAGGTTTTTCCAAAGCTGGATCTTCTCACCAAAGTCCCACAGCGAGCCCTGGAGCTGGACAAGAACAGAGCCATAGAAACTGCTCCTCTCAGCTTCCGAACCCTGGTAGGACTGCTTGGAATCGAAGCTGCTCTGGAAAGCCTGATAAAATCGCTTTGTGCAGAGGAGAACAACTAG MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSPAPRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLGAGLGGPGARLFGWLKERSLGRGLFVDPARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29882 UACA::ARID1A ENSG00000137831.15::ENSG00000117713.21 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 845 TRUE 1483 TRUE 577 UACA ENSG00000137831.15 protein_coding - - chr15:70654554-70763558:- chr15:70664662:- chr15:70946893-71055897:- chr15:70957001:- ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26771119:+ chr1:27019727-27108595:+ chr1:27097610:+ chr15:70661211,chr15:70661427,chr15:70661436 chr1:26767420,chr1:26767364,chr1:26767354 NA NA chr15:70953550,chr15:70953766,chr15:70953775 chr1:27093911,chr1:27093855,chr1:27093845 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|37-84|8.6e-08^Ank_2|38-125|1.3e-15^Ank|38-63|0.53^Ank_3|38-61|0.98^Ank_5|54-99|0.0042^Ank_3|67-95|0.0011^Ank|68-97|0.0017^Ank_4|78-121|5.6e-09^Ank_2|79-164|9.2e-18^Ank_5|90-127|1.7e-07^Ank|101-125|1.9e-06^Ank_3|101-126|0.0001^Ank_2|107-197|4.2e-19^Ank_5|131-174|4.9e-08^Ank|133-164|7.8e-09^Ank_3|134-162|0.00041^Ank_4|135-187|1.5e-10^Ank_2|164-228|5e-15^Ank|166-198|9.6e-09^Ank_3|166-194|4.7e-06^Ank_4|182-208|9.6e-05^Ank_5|186-233|2e-09^Ank|200-230|1.4e-06^Ank_3|200-227|8.2e-07^Ank_4|201-251|0.0006^Filament|268-368|0.0012^ATG16|272-348|9^Lebercilin|291-373|9^Lebercilin|435-510|0.38^Filament|438-575|0.37^ATG16|455-564|0.0044^Lebercilin|490-614|0.047^Lebercilin|535-718|9^ATG16|558-622|0.17^Filament|608-889|0.00035^ATG16|626-681|5.8^Pox_A_type_inc|662-672|0.45^ATG16|672-800|0.19^Lebercilin|703-731|0.033^Lebercilin|732-825|1.2^ATG16|752-898|7e-07^Pox_A_type_inc|812-829|0.00056^Lebercilin|825-919|0.00053^ATG16|872-978|0.0093^Filament|876-1092|0.0011^Lebercilin|926-979|0.0048^Lebercilin|996-1095|8.8^ATG16|1001-1091|0.062^Lebercilin|1044-1158|9^ATG16|1069-1221|0.2^Filament|1082-1215|0.046^Filament|1177-1257|0.00031^Lebercilin|1192-1376|8.7e-09^Pox_A_type_inc|1199-1208|5^Filament|1228-1380|0.0061^ATG16|1239-1379|0.67^Ank_2|1254-1283|7.4^Pox_A_type_inc|1300-1309|1.1^Pox_A_type_inc|1357-1373|0.017 none ["ARID1A:FoundationOne_panel","ARID1A:Oncogene","ARID1A:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr1] 14 13 14 1.62 ONLY_REF_SPLICE YES_LDAS 0.1747 GT 1.8256 AG 1.5546 ENST00000322954.11 1-4113 ENST00000374152.7 2050-5709 chr15|-|[2]70664662-70664814[0]|[2]70666724-70669462[0]|[2]70671039-70671091[1]|[0]70671965-70672001[0]|[2]70676493-70676591[0]|[2]70677108-70677140[0]|[2]70678099-70678206[0]|[2]70679608-70679676[0]|[2]70682758-70682795[1]|[0]70684265-70684446[2]|[1]70687540-70687646[0]|[2]70687750-70687820[1]|[0]70690454-70690511[0]|[2]70691299-70691363[1]|[0]70695017-70695105[2]|[1]70699527-70699660[0]|[2]70763330-70763407[0]<==>chr1|+|[0]26771119-26771326[0]|[1]26772500-26772632[1]|[2]26772812-26772987[0]|[1]26773346-26773496[1]|[2]26773580-26773717[1]|[2]26773802-26773898[2]|[0]26774329-26775220[0]|[1]26775577-26775707[2]|[0]26779023-26780756[2] atgaagagcctcaagtcccgcctgaggaggcaggacgtgcccggccccgcgtcgtctggcgccgccgccgccagcgcgcatgcagcagattggaataaatatgatgaccgattgatgaaagcagcagaaaggggggatgtagaaaaagtgacctcaatccttgctaaaaagggggtcaatccaggcaaactagatgtggaaggcagatctgtcttccatgttgtgacctcaaaggggaatcttgagtgtttgaatgccatccttatacatggagttgatattacaaccagtgacactgcagggagaaatgctcttcacctggctgctaagtatggacatgcattgtgcctacaaaaacttctacagtacaattgtcccactgagcatgcagacctgcagggaagaactgcacttcacgatgccgcaatggcagattgtccttctagcatacagctgctttgtgaccatggggcctctgtgaatgccaaagatgtagacgggcggacaccacttgttctggctactcagatgagtaggccaacaatatgtcaactgctgatagatagaggagcggatgttaattccagagacaaacaaaacagaactgccctcatgctaggttgcgaatatggttgcagagatgcagtagaagtcttaattaaaaatggtgctgatataagcttgctggatgcgcttggccatgatagttcttactatgcaagaattggtgacaatctggacattctaaccttgttgaagactgcatcggaaaataccaacaaagggagagaactttggaagaaagggccatctttgcaacagcgaaatttgacacacatgcaagatgaagtaaatgtgaagtcacatcagagggagcatcaaaatattcaggatttggagattgaaaatgaagatttgaaagagaggttgagaaaaattcagcaagaacaaagaatacttttggataaagtcaatggtttacagttacagctgaatgaggaagttatggttgctgatgatctggaaagcgagagagaaaagctgaagtcccttttggcagctaaagaaaagcaacatgaagaaagcttaaggactattgaggctctgaaaaatagatttaaatattttgagagtgatcatttaggatcaggaagtcatttcagtaaccgaaaagaagatatgcttcttaaacaaggtcagatgtatatggcagactcacagtgtacttccccaggtataccagcccatatgcaaagcagatctatgttaagacctctggaactatctttacccagtcaaacgtcatactctgaaaatgaaattttaaagaaagagttagaagcaatgcgaactttctgtgagtcagcaaaacaagaccgactgaagctccaaaatgaactggcacacaaagtggcagaatgcaaagctttagcattagaatgtgaaagggtcaaggaggattcagatgaacagataaagcaattagaagatgcattaaaagatgtgcagaagaggatgtatgagtcagaaggtaaagttaaacaaatgcagacccattttcttgcccttaaagaacacttaacaagtgaagcagcctcagggaatcacagactaaccgaggaactgaaggatcagttgaaagacttgaaagtaaaatatgaaggtgcttcagcagaagtggggaaattaagaaaccaaatcaaacaaaatgagatgatagtagaagagtttaagagggatgaaggcaagctgatagaagaaaataagcgattacagaaggaacttagtatgtgtgaaatggagcgagagaagaaaggaagaaaggtcacagagatggaaggccaggcaaaagaattgtcagcgaagttggccctttccattccagctgaaaaatttgaaaacatgaagagctcattatcaaatgaagtgaatgagaaagcaaaaaaattagtagaaatggaaagagaacatgaaaaatcacttagtgaaattagacagttaaagagagaacttgagaatgttaaggccaagcttgctcagcacgtcaaaccagaggaacatgaacaggttaagagcagattagaacagaaatcaggagaacttgggaagaagatcactgagttaacattgaaaaatcagacactacaaaaggaaattgaaaaagtttatttggataataagctcctcaaggagcaagcacataacttaacaattgaaatgaaaaatcattatgttcctttaaaagtaagtgaagacatgaaaaagtcacatgatgcaattattgatgatcttaatagaaagcttttagatgtaacacaaaaatatacagaaaagaagttggaaatggagaaattgctactggaaaatgacagcttaagtaaggatgtaagccgcctagaaactgtgtttgtacctcctgagaaacatgaaaaagagataatagctctgaaatccaatattgttgaacttaagaaacagctgtctgaacttaagaaaaaatgtggtgaagaccaggagaaaatacacgctctcacatctgaaaacactaacttgaagaagatgatgagtaatcagtatgtgccagttaaaacccatgaagaggttaaaatgacactgaatgacacgttagccaaaactaacagagaattattagatgtgaagaaaaaatttgaagatataaatcaggaatttgtaaaaataaaagataagaatgaaatattaaaaagaaacctggaaaacactcagaaccaaataaaagctgagtacatcagcctggcagagcacgaggcaaagatgagctcgctaagtcagagcatgagaaaggtgcaggatagtaatgctgaaatcttggccaactacagaaaaggccaagaagagattgtgacactgcatgccgaaattaaagcccagaagaaggagctcgacacaatacaagaatgcattaaggtaaaatacgccccaattgtcagctttgaggagtgcgagagaaaatttaaagcaacagagaaagaactaaaagaccagttatcagagcagacacaaaagtatagtgtcagtgaagaagaagtcaagaaaaacaagcaagagaatgacaagttaaagaaggagatttttacccttcagaaagatttgagagataagacagttctcattgagaagtctcatgaaatggaaagagcattaagcagaaaaacagacgagctaaacaaacagttaaaagacttgtcacagaaatacacggaagtaaagaatgtgaaagagaagctagtagaagaaaatgccaaacagacttctgagatacttgcagtgcaaaatcttttgcaaaaacaacatgttccattggaacaggttgaggctctgaaaaaatctcttaatggcacaattgaaaatctaaaggaagaactgaagagtatgcaaaggtgttacgagaaagagcagcagacagtgaccaaactgcatcaattgttggagaatcaaaagaactcttctgtacccctggcagagcatttgcagattaaagaagcatttgagaaagaagttggaatcataaaagccagcttgagagaaaaggaagaagaaagccaaaacaaaatggaagaagtctccaaacttcagtcggaggttcagaatactaaacaagcattaaaaaaattagagactagagaggtagttgacttgtctaaatataaagcaacaaaaagtgatttggagacacagatttctagcttaaatgaaaaattggccaatctgaatagaaagtatgaggaagtatgtgaggaagttttgcatgccaaaaagaaggaaatatctgcaaaagatgagaaggaattactgcatttcagcattgagcaagaaattaaggatcagaaggaacgatgtgataagtccttaacaacaatcacagagttacaaagaagaatacaagaatctgctaaacaaatagaagcaaaagataataagataactgaactgcttaatgatgtggaaagattaaaacaggcactcaatggcctttcccaactcacctacacaagtgggaaccccaccaagaggcagagccagctgattgacactctgcagcaccaagtgaaatctctggagcaacagctggccGTCAACAAGAACAAAAAATGGCGGGAACTTGCAACCAACCTCAATGTGGGCACATCAAGCAGTGCTGCCAGCTCCTTGAAAAAGCAGTATATCCAGTGTCTCTATGCCTTTGAATGCAAGATTGAACGGGGAGAAGACCCTCCCCCAGACATCTTTGCAGCTGCTGATTCCAAGAAGTCCCAGCCCAAGATCCAGCCTCCCTCTCCTGCGGGATCAGGATCTATGCAGGGGCCCCAGACTCCCCAGTCAACCAGCAGTTCCATGGCAGAAGGAGGAGACTTAAAGCCACCAACTCCAGCATCCACACCACACAGTCAGATCCCCCCATTGCCAGGCATGAGCAGGAGCAATTCAGTTGGGATCCAGGATGCCTTTAATGATGGAAGTGACTCCACATTCCAGAAGCGGAATTCCATGACTCCAAACCCTGGGTATCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTATGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGCTCCAGGGAGTGATCCCTTCATGTCCTCAGGGCAGGGCCCCAACGGCGGGATGGGTGACCCCTACAGTCGTGCTGCCGGCCCTGGGCTAGGAAATGTGGCGATGGGACCACGACAGCACTATCCCTATGGAGGTCCTTATGACAGAGTGAGGACGGAGCCTGGAATAGGGCCTGAGGGAAACATGAGCACTGGGGCCCCACAGCCGAATCTCATGCCTTCCAACCCAGACTCGGGGATGTATTCTCCTAGCCGCTACCCCCCGCAGCAGCAGCAGCAGCAGCAGCAACGACATGATTCCTATGGCAATCAGTTCTCCACCCAAGGCACCCCTTCTGGCAGCCCCTTCCCCAGCCAGCAGACTACAATGTATCAACAGCAACAGCAGAATTACAAGCGGCCAATGGATGGCACATATGGCCCTCCTGCCAAGCGGCACGAAGGGGAGATGTACAGCGTGCCATACAGCACTGGGCAGGGGCAGCCTCAGCAGCAGCAGTTGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCCCAGCCTTCCCCTCAGCAAGATGTATACAACCAGTATGGCAATGCCTATCCTGCCACTGCCACAGCTGCTACTGAGCGCCGACCAGCAGGCGGCCCCCAGAACCAATTTCCATTCCAGTTTGGCCGAGACCGTGTCTCTGCACCCCCTGGCACCAATGCCCAGCAAAACATGCCACCACAAATGATGGGCGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAAGGCACCATGTGGCAGGGGCGTAATGACATGACCTATAATTATGCCAACAGGCAGAGCACGGGCTCTGCCCCCCAGGGCCCCGCCTATCATGGCGTGAACCGAACAGATGAAATGCTGCACACAGATCAGAGGGCCAACCACGAAGGCTCGTGGCCTTCCCATGGCACACGCCAGCCCCCATATGGTCCCTCTGCCCCTGTGCCCCCCATGACAAGGCCCCCTCCATCTAACTACCAGCCCCCACCAAGCATGCAGAATCACATTCCTCAGGTATCCAGCCCTGCTCCCCTGCCCCGGCCAATGGAGAACCGCACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAGGCAGGTCCCCCAGTACCTGCCTCGCACATAGCACCTGCCCCTGTGCAGCCCCCCATGATTCGGCGGGATATCACCTTCCCACCTGGCTCTGTTGAAGCCACACAGCCTGTGTTGAAGCAGAGGAGGCGGCTCACAATGAAAGACATTGGAACCCCGGAGGCATGGCGGGTAATGATGTCCCTCAAGTCTGGTCTCCTGGCAGAGAGCACATGGGCATTAGATACCATCAACATCCTGCTGTATGATGACAACAGCATCATGACCTTCAACCTCAGTCAGCTCCCAGGGTTGCTAGAGCTCCTTGTAGAATATTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACGCTACTGGATCCTGGGAGGTTCAGCAAGGTGTCTAGTCCAGCTCCCATGGAGGGTGGGGAAGAAGAAGAAGAACTTCTAGGTCCTAAACTAGAAGAGGAAGAAGAAGAGGAAGTAGTTGAAAATGATGAGGAGATAGCCTTTTCAGGCAAGGACAAGCCAGCTTCAGAGAATAGTGAGGAGAAGCTGATCAGTAAGTTTGACAAGCTTCCAGTAAAGATCGTACAGAAGAATGATCCATTTGTGGTGGACTGCTCAGATAAGCTTGGGCGTGTGCAGGAGTTTGACAGTGGCCTGCTGCACTGGCGGATTGGTGGGGGGGACACCACTGAGCATATCCAGACCCACTTCGAGAGCAAGACAGAGCTGCTGCCTTCCCGGCCTCACGCACCCTGCCCACCAGCCCCTCGGAAGCATGTGACAACAGCAGAGGGTACACCAGGGACAACAGACCAGGAGGGGCCCCCACCTGATGGACCTCCAGAAAAACGGATCACAGCCACTATGGATGACATGTTGTCTACTCGGTCTAGCACCTTGACCGAGGATGGAGCTAAGAGTTCAGAGGCCATCAAGGAGAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGACGAACCCCACAGTAAGGATGAGACCCCACTGTGTACCCTTCTGGACTGGCAGGATTCTCTTGCCAAGCGCTGCGTCTGTGTGTCCAATACCATTCGAAGCCTGTCATTTGTGCCAGGCAATGACTTTGAGATGTCCAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCACCCAGAACGGAAGCAGGCACCACTAACTTATGAAAAGGAGGAGGAACAGGACCAAGGGGTGAGCTGCAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAACACCTTGGTTACACTCGCCAACATCTCGGGGCAGTTGGACCTATCTCCATACCCCGAGAGCATTTGCCTGCCTGTCCTGGACGGACTCCTACACTGGGCAGTTTGCCCTTCAGCTGAAGCCCAGGACCCCTTTTCCACCCTGGGCCCCAATGCCGTCCTTTCCCCGCAGAGACTGGTCTTGGAAACCCTCAGCAAACTCAGCATCCAGGACAACAATGTGGACCTGATTCTGGCCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACTATGGTGCGCTTCCTCAGTGACCGAAAGAACCCGGTGTGCCGGGAGATGGCTGTGGTACTGCTGGCCAACCTGGCTCAGGGGGACAGCCTGGCAGCTCGTGCCATTGCAGTGCAGAAGGGCAGTATCGGCAACCTCCTGGGCTTCCTAGAGGACAGCCTTGCCGCCACACAGTTCCAGCAGAGCCAGGCCAGCCTCCTCCACATGCAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGCTGCCCGCGCGCTGCTTGCCTTGGCCAAGGTGGACGAGAACCACTCAGAGTTTACTCTGTACGAATCACGGCTGTTGGACATCTCGGTATCACCGTTGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCATGA MKSLKSRLRRQDVPGPASSGAAAASAHAADWNKYDDRLMKAAERGDVEKVTSILAKKGVNPGKLDVEGRSVFHVVTSKGNLECLNAILIHGVDITTSDTAGRNALHLAAKYGHALCLQKLLQYNCPTEHADLQGRTALHDAAMADCPSSIQLLCDHGASVNAKDVDGRTPLVLATQMSRPTICQLLIDRGADVNSRDKQNRTALMLGCEYGCRDAVEVLIKNGADISLLDALGHDSSYYARIGDNLDILTLLKTASENTNKGRELWKKGPSLQQRNLTHMQDEVNVKSHQREHQNIQDLEIENEDLKERLRKIQQEQRILLDKVNGLQLQLNEEVMVADDLESEREKLKSLLAAKEKQHEESLRTIEALKNRFKYFESDHLGSGSHFSNRKEDMLLKQGQMYMADSQCTSPGIPAHMQSRSMLRPLELSLPSQTSYSENEILKKELEAMRTFCESAKQDRLKLQNELAHKVAECKALALECERVKEDSDEQIKQLEDALKDVQKRMYESEGKVKQMQTHFLALKEHLTSEAASGNHRLTEELKDQLKDLKVKYEGASAEVGKLRNQIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCEMEREKKGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEIRQLKRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLKNQTLQKEIEKVYLDNKLLKEQAHNLTIEMKNHYVPLKVSEDMKKSHDAIIDDLNRKLLDVTQKYTEKKLEMEKLLLENDSLSKDVSRLETVFVPPEKHEKEIIALKSNIVELKKQLSELKKKCGEDQEKIHALTSENTNLKKMMSNQYVPVKTHEEVKMTLNDTLAKTNRELLDVKKKFEDINQEFVKIKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEILANYRKGQEEIVTLHAEIKAQKKELDTIQECIKVKYAPIVSFEECERKFKATEKELKDQLSEQTQKYSVSEEEVKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKYTEVKNVKEKLVEENAKQTSEILAVQNLLQKQHVPLEQVEALKKSLNGTIENLKEELKSMQRCYEKEQQTVTKLHQLLENQKNSSVPLAEHLQIKEAFEKEVGIIKASLREKEEESQNKMEEVSKLQSEVQNTKQALKKLETREVVDLSKYKATKSDLETQISSLNEKLANLNRKYEEVCEEVLHAKKKEISAKDEKELLHFSIEQEIKDQKERCDKSLTTITELQRRIQESAKQIEAKDNKITELLNDVERLKQALNGLSQLTYTSGNPTKRQSQLIDTLQHQVKSLEQQLAVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMSTGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMPPQMMGGPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFSKVSSPAPMEGGEEEEELLGPKLEEEEEEEVVENDEEIAFSGKDKPASENSEEKLISKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKHVTTAEGTPGTTDQEGPPPDGPPEKRITATMDDMLSTRSSTLTEDGAKSSEAIKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation 29883 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 850 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58364771:+ chr10:60094739-60130511:+ chr10:60124531:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame V-SNARE|12-90|7.9e-29^Mer2|12-62|0.00043^DUF6730|15-55|0.31^MetOD2|20-58|0.0022^FapA|30-89|0.00031^Sec20|34-54|0.83^DUF745|34-57|0.0017^Exonuc_VII_L|34-171|0.00078^DUF1664|35-86|0.00036^V-SNARE_C|36-56|1^Laminin_II|36-84|0.032^Sec8_N|36-61|0.055^PCRF|36-89|0.007^Spc7|37-81|0.0071^DUF5344|39-89|0.00041^DegQ|42-61|0.00071^Mer2|73-161|0.02^DegQ|77-89|3.5^DUF6730|77-123|0.57^V-SNARE|96-124|3.6^PCRF|107-195|0.0092^FapA|110-177|0.01^DUF1664|114-171|0.075^MetOD2|116-177|0.0059^DUF745|116-194|0.017^Spc7|122-173|0.0083^V-SNARE_C|123-187|8.2e-24^DUF6730|123-179|0.0014^Adhesin_P1_C|128-201|6.2e-05^Sec20|131-199|7e-05^Laminin_II|136-181|3.8e-05^DUF5344|142-176|0.2^Sec8_N|148-191|0.0029^V-SNARE|157-171|1.6 none ["VTI1A:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:54.08Mb] 14 10 14 2.34 ONLY_REF_SPLICE YES_LDAS 0.1828 GT 1.9086 AG 1.8256 ENST00000432306.5 1-264 ENST00000373910.9 199-444 chr10|+|[0]112447374-112447467[0]|[1]112460524-112460582[2]|[0]112464547-112464657[2]<==>chr10|+|[0]58364771-58364876[0]|[1]58367923-58368016[1]|[2]58368720-58368765[2] atgtcgtccgacttcgaaggttacgagcaggacttcgcggtgctcactgcagagatcaccagcaagattgcgagggtcccacgactcccgcctgatgaaaagaaacagatggttgcaaatgtggagaaacagcttgaagaagcgaaagaactgcttgaacagatggatttggaagtccgagagataccaccccaaagtcgagggatgtacagcaacagaatgagaagctacaaacaagaaatgggaaaactcgaaacagattttATTGCTTTCACAACAAAAATTTACCATCCAAACATAAACAGTAATGGAAGTATTTGTCTCGATATTCTGAGGTCACAATGGTCACCAGCTCTGACTGTATCAAAAGTTTTATTGTCCATATGTTCTCTACTTTGTGATCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAAATCTATAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTCAGAAATATGCAATGTAA MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29884 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 862 TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74718832:- chr11:74407474-74442471:- chr11:74429877:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box-like-PARTIAL|27-42~|1.8e-19^F-box-PARTIAL|27-42~|3.6e-12^F-box_4-PARTIAL|27-42~|1e-05 VWC-PARTIAL|~83-95|1e-13^VWC|111-174|1.7e-12^MAT1-1-2|238-271|0.00032^VWC|252-314|3.1e-15 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr11] 14 12 14 10.87 ONLY_REF_SPLICE YES_LDAS 0.2782 GT 1.7819 AG 1.9656 ENST00000583610.5 1-42 ENST00000263671.9 83-1356 chr17|-|[2]39401361-39401402[0]<==>chr11|-|[2]74696498-74696585[2]|[1]74697205-74697297[2]|[1]74701592-74701646[1]|[0]74702794-74702967[1]|[0]74703305-74703499[1]|[0]74704486-74704654[0]|[2]74706487-74706542[1]|[0]74708302-74708395[0]|[2]74710849-74710991[1]|[0]74713386-74713479[0]|[2]74718720-74718832[1] atgaggagggacgtgaacggagtgaccaagagcaggtttgagGCCCAGACATGTTCTGCCTTTTCCATGGGAAGAGATACTCCCCCGGCGAGAGCTGGCACCCCTACTTGGAGCCACAAGGCCTGATGTACTGCCTGCGCTGTACCTGCTCAGAGGGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTGTGGAACCTCACACTCCCTCTGGACTCCGGGCCCCACCAAAGTCCTGCCAGCACAACGGGACCATGTACCAACACGGAGAGATCTTCAGTGCCCATGAGCTGTTCCCCTCCCGCCTGCCCAACCAGTGTGTCCTCTGCAGCTGCACAGAGGGCCAGATCTACTGCGGCCTCACAACCTGCCCCGAACCAGGCTGCCCAGCACCCCTCCCGCTGCCAGACTCCTGCTGCCAGGCCTGCAAAGATGAGGCAAGTGAGCAATCGGATGAAGAGGACAGTGTGCAGTCGCTCCATGGGGTGAGACATCCTCAGGATCCATGTTCCAGTGATGCTGGGAGAAAGAGAGGCCCGGGCACCCCAGCCCCCACTGGCCTCAGCGCCCCTCTGAGCTTCATCCCTCGCCACTTCAGACCCAAGGGAGCAGGCAGCACAACTGTCAAGATCGTCCTGAAGGAGAAACATAAGAAAGCCTGTGTGCATGGCGGGAAGACGTACTCCCACGGGGAGGTGTGGCACCCGGCCTTCCGTGCCTTCGGCCCCTTGCCCTGCATCCTATGCACCTGTGAGGATGGCCGCCAGGACTGCCAGCGTGTGACCTGTCCCACCGAGTACCCCTGCCGTCACCCCGAGAAAGTGGCTGGGAAGTGCTGCAAGATTTGCCCAGAGGACAAAGCAGACCCTGGCCACAGTGAGATCAGTTCTACCAGGTGTCCCAAGGCACCGGGCCGGGTCCTCGTCCACACATCGGTATCCCCAAGCCCAGACAACCTGCGTCGCTTTGCCCTGGAACACGAGGCCTCGGACTTGGTGGAGATCTACCTCTGGAAGCTGGTAAAAGATGAGGAAACTGAGGCTCAGAGAGGTGAAGTACCTGGCCCAAGGCCACACAGCCAGAATCTTCCACTTGACTCAGATCAAGAAAGTCAGGAAGCAAGACTTCCAGAAAGAGGCACAGCACTTCCGACTGCTCGCTGGCCCCCACGAAGGTCACTGGAACGTCTTCCTAGCCCAGACCCTGGAGCTGAAGGTCACGGCCAGTCCAGACAAAGTGACCAAGACATAACAAAGACCTAA MRRDVNGVTKSRFEAQTCSAFSMGRDTPPARAGTPTWSHKA*CTACAVPAQRAPM*VVTASTVRLSTAPSL*RSHSNAVPSVWNLTLPLDSGPHQSPASTTGPCTNTERSSVPMSCSPPACPTSVSSAAAQRARSTAASQPAPNQAAQHPSRCQTPAARPAKMRQVSNRMKRTVCSRSMG*DILRIHVPVMLGEREARAPQPPLASAPL*ASSLATSDPREQAAQLSRSS*RRNIRKPVCMAGRRTPTGRCGTRPSVPSAPCPASYAPVRMAARTASV*PVPPSTPAVTPRKWLGSAARFAQRTKQTLATVRSVLPGVPRHRAGSSSTHRYPQAQTTCVALPWNTRPRTWWRSTSGSW*KMRKLRLREVKYLAQGHTARIFHLTQIKKVRKQDFQKEAQHFRLLAGPHEGHWNVFLAQTLELKVTASPDKVTKT*QRP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29890 LINC02615::LARP1B ENSG00000251432.8::ENSG00000138709.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 867 FALSE NA FALSE NA LINC02615 ENSG00000251432.8 lncRNA + + chr4:128292751-128519398:+ chr4:128303035:+ chr4:129213906-129440553:+ chr4:129224190:+ LARP1B ENSG00000138709.20 protein_coding + + chr4:128061286-128222931:+ chr4:128199439:+ chr4:128982441-129144086:+ chr4:129120594:+ chr4:128345865 chr4:128193317 NA NA chr4:129267020 chr4:129114472 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 3 11 2.81 ONLY_REF_SPLICE YES_LDAS 0.1544 GT 1.6895 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29893 FBXL20::CHRDL2 ENSG00000108306.13::ENSG00000054938.17 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 863 TRUE 1493 TRUE 585 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- CHRDL2 ENSG00000054938.17 protein_coding - - chr11:74696429-74731426:- chr11:74718832:- chr11:74407474-74442471:- chr11:74429877:- chr17:39383965,chr17:39383970 chr11:74720973,chr11:74720975 NA NA chr17:37540218,chr17:37540223 chr11:74432018,chr11:74432020 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box-like-PARTIAL|29-48~|1.8e-19^F-box-PARTIAL|29-48~|3.7e-12^F-box_4-PARTIAL|29-48~|1e-05 VWC-PARTIAL|~83-95|1e-13^VWC|111-174|1.7e-12^MAT1-1-2|238-271|0.00032^VWC|252-314|3.1e-15 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr11] 10 1 10 0.23 ONLY_REF_SPLICE YES_LDAS 0.1144 GT 1.8892 AG 1.9656 ENST00000577399.5 1-48 ENST00000263671.9 83-1356 chr17|-|[2]39402173-39402220[0]<==>chr11|-|[2]74696498-74696585[2]|[1]74697205-74697297[2]|[1]74701592-74701646[1]|[0]74702794-74702967[1]|[0]74703305-74703499[1]|[0]74704486-74704654[0]|[2]74706487-74706542[1]|[0]74708302-74708395[0]|[2]74710849-74710991[1]|[0]74713386-74713479[0]|[2]74718720-74718832[1] atggctccgagcagggaccgcctgctgcactttgggttcaaggcgacaGCCCAGACATGTTCTGCCTTTTCCATGGGAAGAGATACTCCCCCGGCGAGAGCTGGCACCCCTACTTGGAGCCACAAGGCCTGATGTACTGCCTGCGCTGTACCTGCTCAGAGGGCGCCCATGTGAGTTGTTACCGCCTCCACTGTCCGCCTGTCCACTGCCCCCAGCCTGTGACGGAGCCACAGCAATGCTGTCCCAAGTGTGTGGAACCTCACACTCCCTCTGGACTCCGGGCCCCACCAAAGTCCTGCCAGCACAACGGGACCATGTACCAACACGGAGAGATCTTCAGTGCCCATGAGCTGTTCCCCTCCCGCCTGCCCAACCAGTGTGTCCTCTGCAGCTGCACAGAGGGCCAGATCTACTGCGGCCTCACAACCTGCCCCGAACCAGGCTGCCCAGCACCCCTCCCGCTGCCAGACTCCTGCTGCCAGGCCTGCAAAGATGAGGCAAGTGAGCAATCGGATGAAGAGGACAGTGTGCAGTCGCTCCATGGGGTGAGACATCCTCAGGATCCATGTTCCAGTGATGCTGGGAGAAAGAGAGGCCCGGGCACCCCAGCCCCCACTGGCCTCAGCGCCCCTCTGAGCTTCATCCCTCGCCACTTCAGACCCAAGGGAGCAGGCAGCACAACTGTCAAGATCGTCCTGAAGGAGAAACATAAGAAAGCCTGTGTGCATGGCGGGAAGACGTACTCCCACGGGGAGGTGTGGCACCCGGCCTTCCGTGCCTTCGGCCCCTTGCCCTGCATCCTATGCACCTGTGAGGATGGCCGCCAGGACTGCCAGCGTGTGACCTGTCCCACCGAGTACCCCTGCCGTCACCCCGAGAAAGTGGCTGGGAAGTGCTGCAAGATTTGCCCAGAGGACAAAGCAGACCCTGGCCACAGTGAGATCAGTTCTACCAGGTGTCCCAAGGCACCGGGCCGGGTCCTCGTCCACACATCGGTATCCCCAAGCCCAGACAACCTGCGTCGCTTTGCCCTGGAACACGAGGCCTCGGACTTGGTGGAGATCTACCTCTGGAAGCTGGTAAAAGATGAGGAAACTGAGGCTCAGAGAGGTGAAGTACCTGGCCCAAGGCCACACAGCCAGAATCTTCCACTTGACTCAGATCAAGAAAGTCAGGAAGCAAGACTTCCAGAAAGAGGCACAGCACTTCCGACTGCTCGCTGGCCCCCACGAAGGTCACTGGAACGTCTTCCTAGCCCAGACCCTGGAGCTGAAGGTCACGGCCAGTCCAGACAAAGTGACCAAGACATAACAAAGACCTAA MAPSRDRLLHFGFKATAQTCSAFSMGRDTPPARAGTPTWSHKA*CTACAVPAQRAPM*VVTASTVRLSTAPSL*RSHSNAVPSVWNLTLPLDSGPHQSPASTTGPCTNTERSSVPMSCSPPACPTSVSSAAAQRARSTAASQPAPNQAAQHPSRCQTPAARPAKMRQVSNRMKRTVCSRSMG*DILRIHVPVMLGEREARAPQPPLASAPL*ASSLATSDPREQAAQLSRSS*RRNIRKPVCMAGRRTPTGRCGTRPSVPSAPCPASYAPVRMAARTASV*PVPPSTPAVTPRKWLGSAARFAQRTKQTLATVRSVLPGVPRHRAGSSSTHRYPQAQTTCVALPWNTRPRTWWRSTSGSW*KMRKLRLREVKYLAQGHTARIFHLTQIKKVRKQDFQKEAQHFRLLAGPHEGHWNVFLAQTLELKVTASPDKVTKT*QRP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29894 FXR1::SOX2-OT ENSG00000114416.19::ENSG00000242808.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FXR1 ENSG00000114416.19 protein_coding + + chr3:180868141-180982753:+ chr3:180963090:+ chr3:180585929-180700541:+ chr3:180680878:+ SOX2-OT ENSG00000242808.12 lncRNA + + chr3:180989762-181836880:+ chr3:181088877:+ chr3:180707550-181554668:+ chr3:180806665:+ chr3:180964032,chr3:180964031 chr3:181044850,chr3:181044846 NA NA chr3:180681820,chr3:180681819 chr3:180762638,chr3:180762634 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.01Mb];NEIGHBORS[7017] 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1677 GT 1.9656 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29895 VTI1A::UBE2D1 ENSG00000151532.15::ENSG00000072401.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 851 TRUE 1487 TRUE 580 VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112464657:+ chr10:114206756-114578503:+ chr10:114224416:+ UBE2D1 ENSG00000072401.15 protein_coding + + chr10:58334979-58370751:+ chr10:58367923:+ chr10:60094739-60130511:+ chr10:60127683:+ chr10:112526091,chr10:112526088 chr10:58361690,chr10:58361684 NA NA chr10:114285850,chr10:114285847 chr10:60121450,chr10:60121444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame V-SNARE|12-90|7.9e-29^Mer2|12-62|0.00043^DUF6730|15-55|0.31^MetOD2|20-58|0.0022^FapA|30-89|0.00031^Sec20|34-54|0.83^DUF745|34-57|0.0017^Exonuc_VII_L|34-171|0.00078^DUF1664|35-86|0.00036^V-SNARE_C|36-56|1^Laminin_II|36-84|0.032^Sec8_N|36-61|0.055^PCRF|36-89|0.007^Spc7|37-81|0.0071^DUF5344|39-89|0.00041^DegQ|42-61|0.00071^Mer2|73-161|0.02^DegQ|77-89|3.5^DUF6730|77-123|0.57^V-SNARE|96-124|3.6^PCRF|107-195|0.0092^FapA|110-177|0.01^DUF1664|114-171|0.075^MetOD2|116-177|0.0059^DUF745|116-194|0.017^Spc7|122-173|0.0083^V-SNARE_C|123-187|8.2e-24^DUF6730|123-179|0.0014^Adhesin_P1_C|128-201|6.2e-05^Sec20|131-199|7e-05^Laminin_II|136-181|3.8e-05^DUF5344|142-176|0.2^Sec8_N|148-191|0.0029^V-SNARE|157-171|1.6 none ["VTI1A:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:54.08Mb] 9 6 9 0.79 ONLY_REF_SPLICE YES_LDAS 0.1095 GT 1.9086 AG 1.5546 ENST00000432306.5 1-264 ENST00000373910.9 305-444 chr10|+|[0]112447374-112447467[0]|[1]112460524-112460582[2]|[0]112464547-112464657[2]<==>chr10|+|[1]58367923-58368016[1]|[2]58368720-58368765[2] atgtcgtccgacttcgaaggttacgagcaggacttcgcggtgctcactgcagagatcaccagcaagattgcgagggtcccacgactcccgcctgatgaaaagaaacagatggttgcaaatgtggagaaacagcttgaagaagcgaaagaactgcttgaacagatggatttggaagtccgagagataccaccccaaagtcgagggatgtacagcaacagaatgagaagctacaaacaagaaatgggaaaactcgaaacagattttTTTTATTGTCCATATGTTCTCTACTTTGTGATCCTAATCCAGATGACCCCTTAGTACCAGATATTGCACAAATCTATAAATCAGACAAAGAAAAATACAACAGACATGCAAGAGAATGGACTCAGAAATATGCAATGTAA MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFFYCPYVLYFVILIQMTP*YQILHKSINQTKKNTTDMQENGLRNMQC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29897 EPB41::SERINC2 ENSG00000159023.23::ENSG00000168528.12 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 874 FALSE NA FALSE NA EPB41 ENSG00000159023.23 protein_coding + + chr1:28887091-29120046:+ chr1:28997319:+ chr1:29213603-29446558:+ chr1:29323831:+ SERINC2 ENSG00000168528.12 protein_coding + + chr1:31409565-31434680:+ chr1:31432967:+ chr1:31882412-31907527:+ chr1:31905814:+ chr1:29010818,chr1:29010817 chr1:31432022,chr1:31431784 NA NA chr1:29337330,chr1:29337329 chr1:31904869,chr1:31904631 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CRISPR_Cas6_N|180-225|9.7e-05^FERM_N|214-276|5.9e-25^FERM_M|292-401|8.7e-30^FERM_C|357-380|5.1^FERM_N|385-396|3^FERM_C|406-492|3.6e-34^FA|499-542|6.6e-23^FA|588-603|1.9^SAB|653-701|1.5e-26 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:2.29Mb] 8 3 8 3 ONLY_REF_SPLICE YES_LDAS 0.1231 GT 1.8323 AG 1.8892 ENST00000373797.2 1-786 ENST00000536859.5 1026-1380 chr1|+|[0]28987438-28987905[2]|[0]28993330-28993542[2]|[0]28997215-28997319[2]<==>chr1|+|[2]31432967-31433185[1]|[2]31434064-31434199[2] atgacaacagagaagagtttagtgactgaggccgaaaattcacagcaccaacagaaggaagagggtgaggaagccataaactcaggccaacaagaacctcagcaggaggaatcttgtcaaacagcagctgaaggagataattggtgtgaacagaagctgaaagcttctaatggagacactcctacacatgaagacttgaccaagaacaaggagcggacatcagaaagcagaggactttcacgactattctcctcgtttctcaaaaggcccaaatctcaggtgtccgaggaagaaggcaaagaagtagagtcagataaagaaaaaggtgaaggaggtcagaaagagatagaatttggaaccagtcttgatgaagagatcattttaaaggccccaattgcagctcctgaaccggaactcaaaacagacccatctttggatcttcattcattaagcagtgcagaaacacagcctgctcaggaagaactcagagaagatccagattttgaaattaaggaaggagaaggacttgaagagtgctccaaaatagaagtaaaagaagaaagccctcaatcaaaagcagaaacagaattaaaagcttcccaaaaaccaatcagaaaacacaggaacatgcactgcaaggtttctttgttggatgacacagtttatgaatgtgttgtggagaaacatgctaagggacaagatttgcttaaacgagtatgtgagcatctcaatcttttggaagaagactattttggtctagccatttgggataacgcaacctctaagTCTGCGCTCCTCAGACCACCGGCAGGTGAACAGCCTGATGCAGACCGAGGAGTGCCCACCTATGCTAGACGCCACACAGCAGCAGCAGCAGGTGGCAGCCTGTGAGGGCCGGGCCTTTGACAACGAGCAGGACGGCGTCACCTACAGCTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCCTCACTGCACGTCATGATGACGCTCACCAACTGGTACAAGCCCGGTGAGACCCGGAAGATGATCAGCACGTGGACCGCCGTGTGGGTGAAGATCTGTGCCAGCTGGGCAGGGCTGCTCCTCTACCTGTGGACCCTGGTAGCCCCACTCCTCCTGCGCAACCGCGACTTCAGCTGA MTTEKSLVTEAENSQHQQKEEGEEAINSGQQEPQQEESCQTAAEGDNWCEQKLKASNGDTPTHEDLTKNKERTSESRGLSRLFSSFLKRPKSQVSEEEGKEVESDKEKGEGGQKEIEFGTSLDEEIILKAPIAAPEPELKTDPSLDLHSLSSAETQPAQEELREDPDFEIKEGEGLEECSKIEVKEESPQSKAETELKASQKPIRKHRNMHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKSALLRPPAGEQPDADRGVPTYARRHTAAAAGGSL*GPGL*QRAGRRHLQLLLLPLLPGAGLTARHDDAHQLVQAR*DPEDDQHVDRRVGEDLCQLGRAAPLPVDPGSPTPPAQPRLQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29899 CORO7::ANKS3 ENSG00000262246.6::ENSG00000168096.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4412356:- chr16:4404543-4475706:- chr16:4462357:- ANKS3 ENSG00000168096.15 protein_coding - - chr16:4696510-4734378:- chr16:4702242:- chr16:4746511-4784379:- chr16:4752243:- chr16:4409867,chr16:4409880 chr16:4703639,chr16:4703642 NA NA chr16:4459868,chr16:4459881 chr16:4753640,chr16:4753643 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF1899|32-77|1e-06^NBCH_WD40|79-119|0.00015^WD40|83-118|5.2e-12^BING4CT|88-126|0.00011^Ge1_WD40|89-119|0.053^ANAPC4_WD40|91-117|0.12^ANAPC4_WD40|98-190|1.7e-05^BING4CT|142-158|1.7^WD40|144-167|0.00012^NBCH_WD40|150-173|0.079^Ge1_WD40|158-204|0.0003^WD40|172-206|1.6e-05^NBCH_WD40|177-202|0.13^ANAPC4_WD40|180-205|0.047 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.27Mb] 8 4 8 3.7 ONLY_REF_SPLICE YES_LDAS 0.1309 GT 1.9329 AG 1.7232 ENST00000575850.5 1-271 ENST00000446014.6 482-1584 chr16|-|[0]4412356-4412430[1]|[0]4413308-4413404[0]|[2]4416785-4416883[0]<==>chr16|-|[2]4697028-4697104[1]|[0]4697333-4697416[1]|[0]4697977-4698062[2]|[1]4698427-4698599[0]|[2]4698800-4698941[2]|[1]4699052-4699176[0]|[2]4700970-4701134[0]|[2]4701434-4701543[1]|[0]4702102-4702242[1] atgctgcagccgagaccccacgcaagcaagcaccgcaggagacgtgggctgacagctgcgccccacgtgacctcccacccgcgccagtccgtcccctcgtcctggatcagtgacattcgagcaggaaccgccccttcatgcaggaaccacatcaaatcaagctgcagcttgatcgccttcaactccgaccgtcctggtgtactgggcattgtgcctctgcaaggccaaggagaggacaagcgacgcgtggcccacctgggctgccattcagAGCAGGCTCCTCCCCGTGGCTATGTCACCTTCAACAGCAGTGGCGAGAACCCCCTGGAAGAAGAGGGCCTCTGCTGCCGGGATGTCACCTCCCCCATCAATGAGCGGGATGTGGAGAGCAGCAGCAGCAGCAGCAGTCGGGAGGAACATGCTTTCTGTGCCAACCTGGGGCCCGTCCAGAGCAGCAGCAGCAGCGAGGGCCTGGCCAGAGCCCAGGGGCTCAGCAGCGAAGCTTCTGTGGAGAGCAACGAGGACTCGGATCATGCCTGTAAAAGCTCAGCTCGCAAACAAGCTAAAAGTTACATGAAGACCAAGAATCCTGACAGCCAGTGGCCTCCCCGCGCTGCAACTGACAGGGAAGGCTTTCTCGCTGAGTCCAGCCCCCAGACTCAGAGGGCCCCCTACTCAGGACCCCAGGACCTTGCCGCACTGCTGGAGCAGATCGGGTGTCTGAAGTACCTGCAGGTGTTTGAGGAGCAGGACGTGGACCTCCGCATCTTTCTGACCCTCACTGAGAGCGACCTGAAGGAAATTGGCATCACGCTGTTTGGGCCCAAGAGGAAGATGACGTCCGCCATTGCCCGCTGGCACAGCAGTGCCCGCCCACCCGGGGATGCCCTGGAGCTGGCCTACGCCGACCGGCTGGAGGCTGAGATGCAGGAGCTCGCCATCCAGCTGCACAAGCGCTGCGAGGAGGTAGAGGCCACGCGGGGCCAGGTGTGTCAGGAGCAGGAGCTGCGCGCCGTGGTGGAGAGCTGCCTGCTGGAGCAGGACCGCGCCCGCGAGGACCTCCAGGCCCGGCTGCGGGAGACGTGGGCCCTGGCCCGGGATGCTGCCCTCGTCCTGGACCAGCTGCGAGCCTGTCAAGCTGAGCTGTCATCTCGAGTGAGGCAGGACCAGCCCCCTGGTGCAGCCACTCTGGGCCTAGCCGTCCCCCCAGCTGACTCCAAGGGCTGGCAAGCGTCCCTGCAGGCCATGAGCCTCCCCGAGCTCTCGGGAGCCCTGGAGGACCGTGTCCGTGAGATGGGGCAAGCACTGTGCTTAGTGACCCAGAGCCTGGAGAAGCTGCAGGTGCTGAACGGGAAGAAGTGGCGGGAGACCTAG MLQPRPHASKHRRRRGLTAAPHVTSHPRQSVPSSWISDIRAGTAPSCRNHIKSSCSLIAFNSDRPGVLGIVPLQGQGEDKRRVAHLGCHSEQAPPRGYVTFNSSGENPLEEEGLCCRDVTSPINERDVESSSSSSSREEHAFCANLGPVQSSSSSEGLARAQGLSSEASVESNEDSDHACKSSARKQAKSYMKTKNPDSQWPPRAATDREGFLAESSPQTQRAPYSGPQDLAALLEQIGCLKYLQVFEEQDVDLRIFLTLTESDLKEIGITLFGPKRKMTSAIARWHSSARPPGDALELAYADRLEAEMQELAIQLHKRCEEVEATRGQVCQEQELRAVVESCLLEQDRAREDLQARLRETWALARDAALVLDQLRACQAELSSRVRQDQPPGAATLGLAVPPADSKGWQASLQAMSLPELSGALEDRVREMGQALCLVTQSLEKLQVLNGKKWRET* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29903 IPMK::PRKG1 ENSG00000151151.6::ENSG00000185532.20 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE TRUE 873 FALSE NA FALSE NA IPMK ENSG00000151151.6 protein_coding - - chr10:58191517-58267894:- chr10:58267422:- chr10:59951278-60027654:- chr10:60027182:- PRKG1 ENSG00000185532.20 protein_coding + + chr10:50990888-52298423:+ chr10:52054484:+ chr10:52750648-54058183:+ chr10:53814244:+ chr10:58264169,chr10:58264169,chr10:58264172 chr10:52004557,chr10:52004562,chr10:52004554 NA NA chr10:60023929,chr10:60023929,chr10:60023932 chr10:53764317,chr10:53764322,chr10:53764314 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame IPK-PARTIAL|127-190~|2.9e-57 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:5.89Mb] 5 6 5 6 ONLY_REF_SPLICE YES_LDAS 0.123 GT 1.5628 AG 1.7465 ENST00000373935.4 1-190 ENST00000401604.8 718-2016 chr10|-|[0]58267422-58267611[0]<==>chr10|+|[0]52054484-52054561[2]|[0]52062537-52062631[1]|[2]52133840-52133905[1]|[2]52161889-52161963[1]|[2]52251570-52251666[2]|[0]52271350-52271489[1]|[2]52272392-52272481[1]|[2]52280789-52280930[2]|[0]52282153-52282316[1]|[2]52288726-52288848[1]|[2]52288931-52288993[1]|[2]52290224-52290290[2]|[0]52293802-52293900[2] atggcaacagagccaccatcccccctccgggtcgaggcgccgggccccccagaaatgcggacctcaccggcgatcgagtccacccctgagggcaccccgcagccggcgggcggcagactccgcttcctcaacggctgcgtgcccctctcgcatcaggtggccgggcacatgtacgggaaggacaaagtggACCCACTATGAAAATGGAGAATATATTATCAGGCAAGGTGCAAGAGGGGACACCTTCTTTATCATCAGCAAAGGAACGGTAAATGTCACTCGTGAAGACTCACCGAGTGAAGACCCAGTCTTTCTTAGAACTTTAGGAAAAGGAGACTGGTTTGGAGAGAAAGCCTTGCAGGGGGAAGATGTGAGAACAGCAAACGTAATTGCTGCAGAAGCTGTAACCTGCCTTGTGATTGACAGAGACTCTTTTAAACATTTGATTGGAGGGCTGGATGATGTTTCTAATAAAGCATATGAAGATGCAGAAGCTAAAGCAAAATATGAAGCTGAAGCGGCTTTCTTCGCCAACCTGAAGCTGTCTGATTTCAACATCATTGATACCCTTGGAGTTGGAGGTTTCGGACGAGTAGAACTGGTCCAGTTGAAAAGTGAAGAATCCAAAACGTTTGCAATGAAGATTCTCAAGAAACGTCACATTGTGGACACAAGACAGCAGGAGCACATCCGCTCAGAGAAGCAGATCATGCAGGGGGCTCATTCCGATTTCATAGTGAGACTGTACAGAACATTTAAGGACAGCAAATATTTGTATATGTTGATGGAAGCTTGTCTAGGTGGAGAGCTCTGGACCATTCTCAGGGATAGAGGTTCGTTTGAAGATTCTACAACCAGATTTTACACAGCATGTGTGGTAGAAGCTTTTGCCTATCTGCATTCCAAAGGAATCATTTACAGGGACCTCAAGCCAGAAAATCTCATCCTAGATCACCGAGGTTATGCCAAACTGGTTGATTTTGGCTTTGCAAAGAAAATAGGATTTGGAAAGAAAACATGGACTTTTTGTGGGACTCCAGAGTATGTAGCCCCAGAGATCATCCTGAACAAAGGCCATGACATTTCAGCCGACTACTGGTCACTGGGAATCCTAATGTATGAACTCCTGACTGGCAGCCCACCTTTCTCAGGCCCAGATCCTATGAAAACCTATAACATCATATTGAGGGGGATTGACATGATAGAATTTCCAAAGAAGATTGCCAAAAATGCTGCTAATTTAATTAAAAAACTATGCAGGGACAATCCATCAGAAAGATTAGGGAATTTGAAAAATGGAGTAAAAGACATTCAAAAGCACAAATGGTTTGAGGGCTTTAACTGGGAAGGCTTAAGAAAAGGTACCTTGACACCTCCTATAATACCAAGTGTTGCATCACCCACAGACACAAGTAATTTTGACAGTTTCCCTGAGGACAACGATGAACCACCACCTGATGACAACTCAGGATGGGATATAGACTTCTAA MATEPPSPLRVEAPGPPEMRTSPAIESTPEGTPQPAGGRLRFLNGCVPLSHQVAGHMYGKDKVDPL*KWRIYYQARCKRGHLLYHQQRNGKCHS*RLTE*RPSLS*NFRKRRLVWRESLAGGRCENSKRNCCRSCNLPCD*QRLF*TFDWRAG*CF**SI*RCRS*SKI*S*SGFLRQPEAV*FQHH*YPWSWRFRTSRTGPVEK*RIQNVCNEDSQETSHCGHKTAGAHPLREADHAGGSFRFHSETVQNI*GQQIFVYVDGSLSRWRALDHSQG*RFV*RFYNQILHSMCGRSFCLSAFQRNHLQGPQARKSHPRSPRLCQTG*FWLCKENRIWKENMDFLWDSRVCSPRDHPEQRP*HFSRLLVTGNPNV*TPDWQPTFLRPRSYENL*HHIEGD*HDRISKEDCQKCC*FN*KTMQGQSIRKIREFEKWSKRHSKAQMV*GL*LGRLKKRYLDTSYNTKCCITHRHK*F*QFP*GQR*TTT**QLRMGYRLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE cGMP-dependent protein kinase AGC PKG Q13976 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29905 IMMP2L::LAMB1 ENSG00000184903.10::ENSG00000091136.15 RERFGC1B SRR8615596 SRR8670759 STOMACH carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111329394:- chr7:110302700-111202573:- chr7:110969450:- LAMB1 ENSG00000091136.15 protein_coding - - chr7:107923799-108003213:- chr7:107973071:- chr7:107564244-107643658:- chr7:107613516:- chr7:111130474,chr7:111130476 chr7:107973451,chr7:107973450 NA NA chr7:110770530,chr7:110770532 chr7:107613896,chr7:107613895 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:2.66Mb] 4 8 4 5.09 INCL_NON_REF_SPLICE YES_LDAS 0.1016 GT 1.7056 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29906 UBE2E1::DAZL ENSG00000170142.12::ENSG00000092345.14 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 875 FALSE NA FALSE NA UBE2E1 ENSG00000170142.12 protein_coding + + chr3:23805955-23891640:+ chr3:23811510:+ chr3:23847446-23933131:+ chr3:23853001:+ DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16592148:- chr3:16628299-16711813:- chr3:16633655:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SR-25|6-55|3.7e-06^DUF4603|6-53|0.0011^UQ_con|27-33|1.3^UQ_con|51-146|1.4e-39^RWD|71-118|3.3e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:7.14Mb] 212 163 211.92 163 ONLY_REF_SPLICE YES_LDAS 3.8044 GT 1.9329 AG 1.9656 ENST00000442670.5 1-203 ENST00000250863.12 796-948 chr3|+|[0]23807270-23807421[1]|[2]23811460-23811510[1]<==>chr3|-|[2]16588660-16588713[0]|[2]16592050-16592148[0] atgtcggatgacgattcgagggccagcaccagctcctcctcatcttcgtcttccaaccagcaaaccgagaaagaaacaaacacccccaagaagaaggagagtaaagtcagcatgagcaaaaactccaaactcctctccaccagcgccaagagaattcagaaggagctggcggacatcactttagaccctccacctaattgcagAAATCTGTGGACCGAAGCATACAAACGGTGGTATCTTGTCTGTTTAATCCAGAGAACAGACTGAGAAACTCTGTTGTTACTCAAGATGACTACTTCAAGGATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGA MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCRNLWTEAYKRWYLVCLIQRTD*ETLLLLKMTTSRIKECITLEEVGQCLNLF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29907 PHRF1::ENSG00000289997 ENSG00000070047.13::ENSG00000289997.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1519 TRUE 599 PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:581606:+ chr11:576470-612222:+ chr11:581606:+ ENSG00000289997 ENSG00000289997.1 lncRNA + + chr11:518991-532262:+ chr11:528159:+ chr11:518991-532262:+ chr11:528159:+ chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 135 51 135 46.7 ONLY_REF_SPLICE YES_LDAS 1.8438 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29909 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 883 TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44510553:- chr3:44533372-44552128:- chr3:44552045:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45838051:- chr3:45864808-45957534:- chr3:45879543:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.31Mb] 57 0 57 0 ONLY_REF_SPLICE YES_LDAS 0.5784 GT 1.6402 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29911 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 878 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 39 27 39 16.38 ONLY_REF_SPLICE YES_LDAS 0.5619 GT 1.9219 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29916 LRRFIP2::NEK10 ENSG00000093167.18::ENSG00000163491.18 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 886 FALSE NA FALSE NA LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37174539:- chr3:37094117-37225180:- chr3:37216030:- NEK10 ENSG00000163491.18 protein_coding - - chr3:27106484-27369460:- chr3:27119868:- chr3:27147975-27410951:- chr3:27161359:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:9.68Mb] 28 4 28 4 ONLY_REF_SPLICE YES_LDAS 0.3247 GT 1.9086 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek10 Other NEK Q6ZWH5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29918 ENSG00000242021::PUDP ENSG00000242021.2::ENSG00000130021.15 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 889 FALSE NA FALSE NA ENSG00000242021 ENSG00000242021.2 lncRNA - - chrX:27042907-27176298:- chrX:27158905:- chrX:27061024-27194415:- chrX:27177022:- PUDP ENSG00000130021.15 protein_coding - - chrX:6667865-7148158:- chrX:7050472:- chrX:6585906-7066199:- chrX:6968513:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 22 15 22 15 ONLY_REF_SPLICE YES_LDAS 0.3754 GT 1.6895 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29921 LRP8::HSPG2 ENSG00000157193.18::ENSG00000142798.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 888 FALSE NA FALSE NA LRP8 ENSG00000157193.18 protein_coding - - chr1:53242364-53328469:- chr1:53250690:- chr1:53708036-53794141:- chr1:53716362:- HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21896310:- chr1:22148737-22263803:- chr1:22222803:- chr1:53249318,chr1:53249320 chr1:21933185,chr1:21933184 NA NA chr1:53714990,chr1:53714992 chr1:22259678,chr1:22259677 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EGF_CA|44-57|1.7^Ldl_recept_a|45-81|1.1e-12^Ldl_recept_a|84-122|7e-14^FXa_inhibition|94-100|9.5^EGF_3|98-122|8^Ldl_recept_a|127-163|1.8e-11^EGF_3|145-163|3.6^FXa_inhibition|159-179|0.93^Ldl_recept_a|167-201|2e-15^Ldl_recept_a|205-243|3.9e-13^Ldl_recept_a|259-294|3.8e-15^Ldl_recept_a|298-333|4.7e-14^EGF_3|314-326|5.4^EGF_CA|337-374|1.9e-05^FXa_inhibition|340-374|3.9e-12^EGF_3|340-367|2.3e-06^cEGF|357-379|2.5e-11^EGF_CA|376-414|5.4e-10^FXa_inhibition|383-414|5.1e-06^EGF_3|388-408|0.00061^cEGF|397-414|9.1e-05^DUF5050|423-648|4e-07^Ldl_recept_b|462-506|5.2e-09^SGL|483-529|8.1e-05^Arylesterase|485-523|0.0027^NHL|496-523|0.00063^Ldl_recept_b|510-549|3.5e-18^NHL|539-550|2.3^Ldl_recept_b|552-592|7.1e-18^SGL|575-644|2.9e-06^Arylesterase|580-603|0.33^Ldl_recept_b|596-637|6.9e-14^Arylesterase|606-652|1.3^NHL|628-642|3.9^Ldl_recept_b|639-679|1.7e-12^NHL|669-678|0.67^FXa_inhibition|697-734|7.8e-10^EGF_3|715-723|0.4^cEGF|717-723|0.015^EGF_CA|717-734|0.38^TMEM154|770-862|1.2e-05^PAP_PilO|810-858|9.6e-06 Ldl_recept_a|198-234|1.5e-12^Ldl_recept_a|284-319|8.1e-15^hEGF|292-304|0.71^Ldl_recept_a|324-359|5.4e-13^Ldl_recept_a|368-403|3.4e-12^Ig_3|405-483|1.7e-19^I-set|406-486|2.6e-19^C2-set_2|409-447|0.0043^Ig_2|413-486|1e-09^ig|414-486|2.3e-10^V-set_CD47|437-484|0.014^V-set|448-484|1.3e-05^Izumo-Ig|454-481|0.16^Ig_6|462-482|1.4^Receptor_2B4|463-488|0.52^Laminin_B|595-729|3.8e-39^Laminin_EGF|730-752|0.0014^hEGF|730-737|0.39^EGF|731-739|0.034^Laminin_EGF|764-806|2e-11^Laminin_EGF|814-869|2.6e-08^EGF|829-850|0.18^EGF|854-861|3.6^Laminin_EGF|869-921|3.8e-07^Laminin_B|990-1124|6.1e-42^Laminin_EGF|1125-1149|1.4e-05^EGF|1125-1135|0.011^hEGF|1125-1132|0.055^Laminin_EGF|1159-1206|6.9e-12^Laminin_EGF|1209-1263|9.6e-07^EGF|1223-1245|3.6^EGF|1248-1256|6.3^Laminin_EGF|1275-1322|1.6e-11^hEGF|1287-1297|1.6^Laminin_B|1396-1528|1.5e-40^Laminin_EGF|1529-1551|1.4e-05^hEGF|1529-1536|0.023^EGF|1530-1538|0.032^Laminin_EGF|1563-1610|9.5e-11^Laminin_EGF|1613-1668|1.2e-07^Ig_2|1619-1648|0.51^EGF|1627-1649|0.079^hEGF|1627-1645|4.1^Ig_3|1679-1750|3.6e-15^I-set|1680-1763|1.4e-12^Ig_2|1681-1758|5.9e-11^V-set|1685-1752|7.2e-05^ig|1688-1759|4.8e-14^Ig_6|1709-1751|3e-05^Izumo-Ig|1729-1766|0.034^C2-set|1735-1764|4.5^C2-set_2|1774-1808|0.45^Ig_3|1777-1844|4.3e-14^I-set|1777-1857|2.3e-09^V-set|1777-1816|0.05^Ig_2|1778-1844|1.5e-07^ig|1778-1844|1.1e-09^V-set|1822-1857|4.1e-06^Ig_6|1823-1841|0.052^Izumo-Ig|1824-1842|0.19^Ig_3|1866-1936|1.4e-12^I-set|1866-1950|1.3e-13^Ig_2|1870-1945|1.6e-06^C2-set_2|1870-1906|0.0016^ig|1872-1946|5.4e-06^V-set|1872-1906|0.038^Imm45|1908-1931|0.02^Ig_6|1914-1940|3.4^V-set|1918-1950|0.45^Izumo-Ig|1918-1936|9^Ig_3|1956-2028|3.3e-17^I-set|1956-2042|4.5e-17^Ig_2|1958-2032|6e-12^C2-set_2|1960-2004|0.0043^ig|1962-2038|4.5e-14^V-set|2005-2043|0.00085^Ig_6|2008-2032|0.13^Izumo-Ig|2008-2028|1.7^Receptor_2B4|2009-2043|0.75^C2-set|2012-2043|7^Ig_3|2050-2121|2e-16^I-set|2054-2134|8.8e-16^Ig_2|2054-2133|1.5e-13^ig|2056-2131|6.6e-13^V-set|2057-2090|0.00015^C2-set_2|2057-2091|0.00015^Ig_6|2092-2131|0.011^Imm45|2096-2115|2^Izumo-Ig|2100-2121|0.19^C2-set|2100-2135|0.5^V-set|2101-2135|0.0014^Ig_3|2154-2220|1.4e-14^I-set|2154-2235|3.2e-13^Ig_2|2155-2221|6.3e-12^C2-set_2|2156-2194|0.0031^ig|2157-2226|7.4e-10^V-set|2157-2189|0.00014^V-set_CD47|2180-2228|0.45^Imm45|2195-2221|5.8^Ig_6|2198-2220|0.37^Izumo-Ig|2198-2220|0.39^C2-set|2199-2220|1.1^V-set|2203-2223|0.00047^Ig_3|2246-2315|1.3e-16^I-set|2247-2319|1.3e-14^Ig_2|2248-2325|9.3e-13^ig|2250-2315|1.1e-11^V-set|2251-2282|8e-05^C2-set_2|2251-2285|0.00085^Ig_6|2260-2313|0.61^V-set_CD47|2273-2320|0.52^C2-set|2294-2315|2.9^V-set|2296-2316|0.44^Ig_3|2343-2409|4.2e-14^I-set|2343-2423|2.1e-12^Ig_2|2344-2409|2.7e-11^C2-set_2|2345-2381|0.00085^ig|2346-2410|2.7e-09^V-set|2346-2378|0.00033^V-set_CD47|2368-2414|0.21^Ig_6|2388-2409|1.2^C2-set|2389-2410|8.8^V-set|2392-2412|0.039^Ig_3|2437-2505|7.9e-15^I-set|2437-2520|1.1e-15^Ig_2|2440-2518|1.1e-10^C2-set_2|2441-2477|0.0014^ig|2442-2515|4.5e-12^V-set_CD47|2465-2514|0.92^Ig_6|2483-2518|0.036^V-set|2484-2507|0.00058^C2-set|2485-2508|2.7^Izumo-Ig|2486-2506|1.4^Ig_3|2538-2604|2.5e-15^Ig_2|2538-2616|4.2e-11^I-set|2539-2617|4.5e-14^ig|2540-2612|8.5e-11^V-set|2540-2573|0.015^C2-set_2|2545-2574|0.0047^Ig_6|2582-2603|0.81^C2-set|2583-2609|0.76^Izumo-Ig|2584-2605|0.35^V-set|2585-2611|0.0011^Ig_3|2630-2700|5.2e-17^I-set|2632-2713|9.6e-14^Ig_2|2633-2701|1.1e-10^ig|2635-2702|1.2e-11^V-set|2636-2668|0.0014^C2-set_2|2639-2677|0.00037^V-set_CD47|2646-2710|0.045^Ig_6|2676-2702|0.019^Izumo-Ig|2676-2700|3^C2-set|2678-2713|0.073^V-set|2680-2710|0.0017^Ig_3|2729-2795|2.5e-14^Ig_2|2730-2800|2.5e-12^I-set|2731-2810|1.3e-13^ig|2733-2801|4.3e-10^V-set|2733-2765|0.00058^C2-set_2|2740-2774|0.0047^V-set_CD47|2755-2802|0.47^Ig_6|2769-2798|0.051^Izumo-Ig|2773-2795|1.8^V-set|2778-2798|0.0017^Ig_3|2827-2896|1.6e-14^I-set|2828-2910|2.1e-15^Ig_2|2830-2908|2e-13^C2-set_2|2831-2867|0.0026^ig|2832-2899|6e-09^V-set|2832-2895|4.6e-05^V-set_CD47|2855-2905|0.079^Imm45|2868-2892|5.6^Ig_6|2874-2899|4.4^Izumo-Ig|2876-2896|0.15^Receptor_2B4|2884-2902|5.6^Ig_3|2929-2993|2.5e-14^Ig_2|2929-3009|1.3e-14^C2-set_2|2930-2975|0.001^I-set|2931-3009|3.6e-13^V-set|2931-2962|0.00041^ig|2932-3000|4.5e-09^Ig_6|2941-2994|0.075^V-set_CD47|2953-2994|4.7^Izumo-Ig|2971-3009|0.69^V-set|2975-3009|0.0027^C2-set|2984-3010|3.8^Ig_3|3022-3095|2.3e-14^I-set|3022-3108|3.2e-13^Ig_2|3025-3107|9.4e-10^C2-set_2|3026-3078|0.0049^ig|3027-3105|1.6e-09^V-set_CD47|3050-3108|0.72^V-set|3072-3109|0.00026^Izumo-Ig|3074-3097|0.38^Ig_3|3111-3189|8.2e-16^I-set|3121-3202|7.4e-14^ig|3121-3197|5.5e-09^V-set|3121-3202|1.4e-05^C2-set_2|3122-3147|3.2^Ig_2|3124-3202|4.1e-06^Ig_6|3158-3187|0.044^Receptor_2B4|3159-3195|0.2^Izumo-Ig|3169-3193|0.92^C2-set|3169-3202|0.12^Ig_3|3212-3281|2.1e-16^I-set|3212-3295|2.2e-17^Ig_2|3212-3284|2.7e-11^C2-set_2|3212-3247|0.00024^V-set|3218-3250|0.00042^ig|3219-3292|3.2e-13^V-set_CD47|3243-3294|0.96^Ig_6|3257-3295|0.0041^Izumo-Ig|3261-3292|0.12^Receptor_2B4|3262-3287|0.26^V-set|3263-3295|0.097^Ig_3|3298-3369|1.1e-15^I-set|3299-3382|2.3e-17^V-set|3304-3336|0.023^Ig_2|3306-3372|6.8e-13^ig|3307-3379|2.7e-13^C2-set_2|3311-3339|2.4^V-set_CD47|3327-3376|1.2^Ig_6|3345-3369|0.46^Izumo-Ig|3346-3369|0.046^V-set|3350-3382|0.014^Receptor_2B4|3350-3374|0.84^Ig_3|3400-3469|7.3e-10^I-set|3402-3483|1.1e-10^Ig_2|3402-3476|3.9e-07^C2-set_2|3402-3440|0.89^ig|3405-3480|4.1e-09^V-set|3410-3438|0.068^V-set|3445-3471|0.0011^Ig_6|3446-3475|0.12^Ig_2|3492-3571|6.2e-12^Ig_3|3493-3559|1.5e-15^I-set|3494-3572|7.9e-16^C2-set_2|3497-3530|0.0085^ig|3498-3565|2.4e-08^V-set|3498-3525|0.84^Ig_6|3531-3558|1.2^V-set|3536-3572|0.00095^C2-set|3542-3570|4.5^Izumo-Ig|3544-3576|0.019^Ig_3|3576-3645|1.4e-16^Ig_2|3576-3652|3.5e-11^I-set|3580-3658|1.4e-16^ig|3580-3653|5.1e-14^V-set|3581-3613|0.098^C2-set_2|3585-3614|0.011^Ig_6|3617-3648|0.00036^Izumo-Ig|3622-3647|0.0038^Receptor_2B4|3622-3652|0.021^V-set|3623-3658|0.0087^C2-set|3624-3660|0.00047^V-set_CD47|3635-3658|0.4^Laminin_G_1|3692-3829|1.7e-26^Laminin_G_2|3692-3828|3e-22^Laminin_G_3|3723-3826|0.033^Laminin_EGF|3848-3888|2.4^EGF|3848-3879|4.6e-10^hEGF|3853-3875|4.1e-08^Laminin_EGF|3888-3923|0.9^EGF|3888-3920|0.00016^hEGF|3893-3914|0.038^Laminin_G_3|3934-4082|0.0049^Laminin_G_2|3957-4085|1.2e-28^Laminin_G_1|3959-4088|1.1e-32^EGF|4108-4138|2.5e-08^Laminin_EGF|4111-4142|0.027^hEGF|4113-4135|0.00016^EGF|4147-4174|8.1e-06^hEGF|4153-4170|0.00014^Laminin_EGF|4157-4177|0.086^Laminin_G_3|4229-4339|9.2e-09^Laminin_G_1|4234-4362|1e-32^Laminin_G_2|4234-4362|1.7e-30 ["HSPG2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:31.31Mb] 18 11 18 11 ONLY_REF_SPLICE YES_LDAS 0.2942 GT 1.9086 AG 1.8892 ENST00000371454.6 1-2676 ENST00000374695.8 64-13176 chr1|-|[2]53250690-53250862[1]|[0]53255117-53255185[1]|[0]53257240-53257464[1]|[0]53258319-53258471[1]|[0]53260464-53260605[0]|[2]53262068-53262207[1]|[0]53262446-53262564[2]|[1]53264169-53264396[2]|[1]53266473-53266647[1]|[0]53271028-53271153[1]|[0]53271227-53271346[1]|[0]53275631-53275753[1]|[0]53276692-53277078[1]|[0]53280587-53280715[1]|[0]53289567-53289689[1]|[0]53326873-53326992[1]|[0]53327789-53327912[0]<==>chr1|-|[2]21823316-21823488[1]|[0]21823616-21823719[2]|[1]21824121-21824204[2]|[1]21824306-21824376[0]|[2]21824537-21824615[2]|[1]21824704-21824779[1]|[0]21827863-21827919[1]|[0]21828030-21828152[1]|[0]21828255-21828426[0]|[2]21828835-21829079[1]|[0]21829383-21829604[1]|[0]21829993-21830091[1]|[0]21830982-21831090[0]|[2]21831215-21831324[1]|[0]21831463-21831562[0]|[2]21831652-21831796[2]|[1]21832495-21832606[1]|[0]21833268-21833384[1]|[0]21833467-21833614[0]|[2]21833816-21833925[1]|[0]21834679-21834945[1]|[0]21835540-21835637[2]|[1]21836802-21837006[1]|[0]21838825-21839085[1]|[0]21839371-21839550[1]|[0]21839822-21840017[0]|[2]21841101-21841285[1]|[0]21841539-21841673[1]|[0]21842002-21842142[1]|[0]21842239-21842380[0]|[2]21842770-21842921[1]|[0]21843297-21843438[0]|[2]21844148-21844299[1]|[0]21846108-21846255[0]|[2]21846448-21846599[1]|[0]21847354-21847492[0]|[2]21847689-21847840[1]|[0]21847958-21848093[0]|[2]21848643-21848794[1]|[0]21848893-21849031[0]|[2]21850041-21850192[1]|[0]21850363-21850498[0]|[2]21851546-21851697[1]|[0]21851791-21851926[0]|[2]21852088-21852233[1]|[0]21852700-21852832[0]|[2]21852919-21853070[1]|[0]21854193-21854343[0]|[2]21854611-21854765[1]|[0]21854848-21854983[0]|[2]21855304-21855446[1]|[0]21855523-21855675[1]|[0]21855787-21855912[1]|[0]21857015-21857195[0]|[2]21857285-21857385[1]|[0]21859566-21859676[1]|[0]21859835-21860002[1]|[0]21860177-21860235[2]|[1]21861757-21861843[2]|[1]21861988-21862115[0]|[2]21864100-21864213[0]|[2]21864843-21865073[0]|[2]21865285-21865365[0]|[2]21865717-21865809[0]|[2]21872186-21872377[0]|[2]21872620-21872760[0]|[2]21872997-21873091[1]|[0]21873375-21873424[2]|[1]21873925-21874011[2]|[1]21874406-21874533[0]|[2]21874616-21874729[0]|[2]21874891-21875002[2]|[1]21875629-21875747[0]|[2]21875863-21876042[0]|[2]21876229-21876405[0]|[2]21876512-21876652[0]|[2]21878186-21878253[1]|[0]21878433-21878491[2]|[1]21878577-21878663[2]|[1]21878994-21879121[0]|[2]21880107-21880254[2]|[1]21880363-21880559[0]|[2]21880656-21880835[0]|[2]21881339-21881502[1]|[0]21884528-21884674[1]|[0]21884767-21884918[2]|[1]21885013-21885157[1]|[0]21885320-21885451[1]|[0]21887215-21887334[1]|[0]21887420-21887674[1]|[0]21887938-21888066[1]|[0]21889981-21890141[2]|[1]21890427-21890485[0]|[2]21890585-21890694[1]|[0]21895922-21895966[1]|[0]21896175-21896310[0] atgggcctccccgagccgggccctctccggcttctggcgctgctgctgctgctgctgctgctgctgctgctgcagctccagcatcttgcggcggcagcggctgatccgctgctcggcggccaagggccggccaaggattgcgaaaaggaccaattccagtgccggaacgagcgctgcatcccctctgtgtggagatgcgacgaggacgatgactgcttagaccacagcgacgaggacgactgccccaagaagacctgtgcagacagtgacttcacctgtgacaacggccactgcatccacgaacggtggaagtgtgacggcgaggaggagtgtcctgatggctccgatgagtccgaggccacttgcaccaagcaggtgtgtcctgcagagaagctgagctgtggacccaccagccacaagtgtgtacctgcctcgtggcgctgcgacggggagaaggactgcgagggtggagcggatgaggccggctgtgctaccttgtgcgccccgcacgagttccagtgcggcaaccgctcgtgcctggccgccgtgttcgtgtgcgacggcgacgacgactgtggtgacggcagcgatgagcgcggctgtgcagacccggcctgcgggccccgcgagttccgctgcggcggcgatggcggcggcgcctgcatcccggagcgctgggtctgcgaccgccagtttgactgcgaggaccgctcggacgaggcagccgagctctgcggccgtccgggccccggggccacgtccgcgcccgccgcctgcgccaccgcctcccagttcgcctgccgcagcggcgagtgcgtgcacctgggctggcgctgcgacggcgaccgcgactgcaaagacaaatcggacgaggccgactgcccactgggcacctgccgtggggacgagttccagtgtggggatgggacatgtgtccttgcaatcaagcactgcaaccaggagcaggactgtccagatgggagtgatgaagctggctgcctacaggggctgaacgagtgtctgcacaacaatggcggctgctcacacatctgcactgacctcaagattggctttgaatgcacgtgcccagcaggcttccagctcctggaccagaagacctgtggcgacattgatgagtgcaaggacccagatgcctgcagccagatctgtgtcaattacaagggctattttaagtgtgagtgctaccctggctacgagatggacctactgaccaagaactgcaaggctgctgctggcaagagcccatccctaatcttcaccaaccggcacgaggtgcggaggatcgacctggtgaagcggaactattcacgcctcatccccatgctcaagaatgtcgtggcactagatgtggaagttgccaccaatcgcatctactggtgtgacctctcctaccgtaagatctatagcgcctacatggacaaggccagtgacccgaaagagcaggaggtcctcattgacgagcagttgcactctccagagggcctggcagtggactgggtccacaagcacatctactggactgactcgggcaataagaccatctcagtggccacagttgatggtggccgccgacgcactctcttcagccgtaacctcagtgaaccccgggccatcgctgttgaccccctgcgagggttcatgtattggtctgactggggggaccaggccaagattgagaaatctgggctcaacggtgtggaccggcaaacactggtgtcagacaatattgaatggcccaacggaatcaccctggatctgctgagccagcgcttgtactgggtagactccaagctacaccaactgtccagcattgacttcagtggaggcaacagaaagacgctgatctcctccactgacttcctgagccacccttttgggatagctgtgtttgaggacaaggtgttctggacagacctggagaacgaggccattttcagtgcaaatcggctcaatggcctggaaatctccatcctggctgagaacctcaacaacccacatgacattgtcatcttccatgagctgaagcagccaagagctccagatgcctgtgagctgagtgtccagcctaatggaggctgtgaatacctgtgccttcctgctcctcagatctccagccactctcccaagtacacatgtgcctgtcctgacacaatgtggctgggtccagacatgaagaggtgctaccgagcacctcaatctacctcaactacgacgttagcttctaccatgacgaggacagtacctgccaccacaagagcccccgggaccaccgtccacagatccacctaccagaaccacagcacagagacaccaagcctgacagctgcagtcccaagctcagttagtgtccccagggctcccagcatcagcccgtctaccctaagccctgcaaccagcaaccactcccagcactatgcaaatgaagacagtaagatgggctcaacagtcactgccgctgttatcgggatcatcgtgcccatagtggtgatagccctcctgtgcatgagtggatacctgatctggagaaactggaagcggaagaacaccaaaagcatgaattttgacaacccagtctacaggaaaacaacagaagaagaagacgaagatgagctccatatagggagaactgctcagattggccatgtctatcctgcaGTGACCCATGGGCTGAGGGCATACGATGGCTTGTCTCTGCCTGAGGACATAGAGACCGTCACAGCAAGCCAAATGCGCTGGACACATTCGTACCTTTCTGATGATGAGGACATGCTGGCTGACAGCATCTCAGGAGACGACCTGGGCAGTGGGGACCTGGGCAGCGGGGACTTCCAGATGGTTTATTTCCGAGCCCTGGTGAATTTCACTCGCTCCATCGAGTACAGCCCTCAGCTGGAGGATGCAGGCTCCAGAGAGTTCCGAGAGGTGTCCGAGGCTGTGGTAGACACGCTGGAGTCGGAGTACTTGAAAATTCCCGGAGACCAGGTTGTCAGTGTGGTGTTCATCAAGGAGCTGGATGGCTGGGTTTTTGTGGAGCTGGATGTGGGCTCGGAAGGGAATGCGGATGGGGCTCAGATTCAGGAGATGCTGCTCAGGGTCATCTCCAGCGGCTCTGTGGCCTCCTACGTCACCTCTCCCCAGGGATTCCAGTTCCGACGCCTGGGCACAGTGCCCCAGTTCCCAAGAGCCTGCACGGAGGCCGAGTTTGCCTGCCACAGCTACAATGAGTGTGTGGCCCTGGAGTATCGCTGTGACCGGCGGCCCGACTGCAGGGACATGTCTGATGAGCTCAATTGTGAGGAGCCAGTCCTGGGTATCAGCCCCACATTCTCTCTCCTTGTGGAGACGACATCTTTACCGCCCCGGCCAGAGACAACCATCATGCGACAGCCACCAGTCACCCACGCTCCTCAGCCCCTGCTTCCCGGTTCCGTCAGGCCCCTGCCCTGTGGGCCCCAGGAGGCCGCATGCCGCAATGGGCACTGCATCCCCAGAGACTACCTCTGCGACGGACAGGAGGACTGCGAGGACGGCAGCGATGAGCTAGACTGTGGCCCCCCGCCACCCTGTGAGCCCAACGAGTTCCCCTGCGGGAATGGACATTGTGCCCTCAAGCTGTGGCGCTGCGATGGTGACTTTGACTGTGAGGACCGAACTGATGAAGCCAACTGCCCCACCAAGCGTCCTGAGGAAGTGTGCGGGCCCACACAGTTCCGATGCGTCTCTACCAACATGTGCATCCCAGCCAGCTTCCACTGTGACGAGGAGAGCGACTGTCCTGACCGGAGCGACGAGTTTGGCTGCATGCCCCCCCAGGTGGTGACACCTCCCCGGGAGTCCATCCAGGCTTCCCGGGGCCAGACAGTGACCTTCACCTGCGTGGCCATTGGCGTCCCCACCCCCATCATCAATTGGAGGCTCAACTGGGGCCACATCCCCTCTCATCCCAGGGTGACAGTGACCAGCGAGGGTGGCCGTGGCACACTGATCATCCGTGATGTGAAGGAGTCAGACCAGGGTGCCTACACCTGTGAGGCCATGAACGCCCGGGGCATGGTGTTTGGCATTCCTGACGGTGTCCTTGAGCTCGTCCCACAACGAGGCCCCTGCCCTGACGGCCACTTCTACCTGGAGCACAGCGCCGCCTGCCTGCCCTGCTTCTGCTTTGGCATCACCAGCGTGTGCCAGAGCACCCGCCGCTTCCGGGACCAGATCAGGCTGCGCTTTGACCAACCCGATGACTTCAAGGGTGTGAATGTGACAATGCCTGCGCAGCCCGGCACGCCACCCCTCTCCTCCACGCAGCTGCAGATCGACCCATCCCTGCACGAGTTCCAGCTAGTCGACCTGTCCCGCCGCTTCCTCGTCCACGACTCCTTCTGGGCTCTGCCTGAACAGTTCCTGGGCAACAAGGTGGACTCCTATGGCGGCTCCCTGCGTTACAACGTGCGCTACGAGTTGGCCCGTGGCATGCTGGAGCCAGTGCAGCGGCCGGACGTGGTCCTCATGGGTGCCGGGTACCGCCTCCTCTCCCGAGGCCACACACCCACCCAACCTGGTGCTCTGAACCAGCGCCAGGTCCAGTTCTCTGAGGAGCACTGGGTCCATGAGTCTGGCCGGCCGGTGCAGCGCGCGGAGCTGCTGCAGGTGCTGCAGAGCCTGGAGGCCGTGCTCATCCAGACCGTGTACAACACCAAGATGGCCAGCGTGGGACTTAGCGACATCGCCATGGATACCACCGTCACCCATGCCACCAGCCATGGCCGTGCCCACAGTGTGGAGGAGTGCAGATGCCCCATTGGCTATTCTGGCTTGTCCTGCGAGAGCTGTGATGCCCACTTCACTCGGGTGCCTGGTGGGCCCTACCTGGGCACCTGCTCTGGTTGCAATTGCAATGGCCATGCCAGCTCCTGTGACCCTGTGTATGGCCACTGCCTGAATTGCCAGCACAACACGGAGGGGCCACAGTGCAACAAGTGCAAGGCTGGCTTCTTTGGGGACGCCATGAAGGCCACGGCCACTTCCTGCCGGCCCTGCCCTTGCCCATACATCGATGCCTCCCGCAGATTCTCAGACACTTGCTTCCTGGACACGGATGGCCAAGCCACATGTGACGCCTGTGCCCCAGGCTACACTGGCCGCCGCTGTGAGAGCTGTGCCCCCGGATACGAGGGCAACCCCATCCAGCCCGGCGGGAAGTGCAGGCCCGTCAACCAGGAGATTGTGCGCTGTGACGAGCGTGGCAGCATGGGGACCTCCGGGGAGGCCTGCCGCTGTAAGAACAATGTGGTGGGGCGCTTGTGCAATGAATGTGCTGACGGCTCTTTCCACCTGAGTACCCGAAACCCCGATGGCTGCCTCAAGTGCTTCTGCATGGGTGTCAGTCGCCACTGCACCAGCTCTTCATGGAGCCGTGCCCAGTTGCATGGGGCCTCTGAGGAGCCTGGTCACTTCAGCCTGACCAACGCCGCAAGCACCCACACCACCAACGAGGGCATCTTCTCCCCCACGCCCGGGGAACTGGGATTCTCCTCCTTCCACAGACTCTTATCTGGACCCTACTTCTGGAGCCTCCCTTCACGCTTCCTGGGGGACAAGGTGACCTCCTATGGAGGAGAGCTGCGCTTCACAGTGACCCAGAGGTCCCAGCCGGGCTCCACACCCCTGCACGGGCAGCCGTTGGTGGTGCTGCAAGGTAACAACATCATCCTAGAGCACCATGTGGCCCAGGAGCCCAGCCCCGGCCAGCCCAGCACCTTCATTGTGCCTTTCCGGGAGCAAGCATGGCAGCGGCCCGATGGGCAGCCAGCCACACGGGAGCACCTGCTGATGGCACTGGCAGGCATCGACACCCTCCTGATCCGAGCATCCTACGCCCAGCAGCCCGCTGAGAGCAGGGTCTCTGGCATCAGCATGGACGTGGCTGTGCCCGAGGAAACCGGCCAGGACCCCGCGCTGGAAGTGGAACAGTGCTCCTGCCCACCCGGGTACCGTGGGCCGTCCTGCCAGGACTGTGACACAGGCTACACACGCACGCCCAGTGGCCTCTACCTGGGTACCTGTGAACGCTGCAGCTGCCATGGCCACTCAGAGGCCTGCGAGCCAGAAACAGGTGCCTGCCAGGGCTGCCAGCATCACACGGAGGGCCCTCGGTGTGAGCAGTGCCAGCCAGGATACTACGGGGACGCCCAGCGGGGGACACCACAGGACTGCCAGCTGTGCCCCTGCTACGGAGACCCTGCTGCCGGCCAGGCTGCCCACACTTGTTTTCTGGACACAGACGGCCACCCCACCTGTGATGCGTGCTCCCCAGGCCACAGTGGGCGTCACTGTGAGAGGTGCGCCCCTGGCTACTATGGCAACCCCAGCCAGGGCCAGCCATGCCAGAGAGACAGCCAGGTGCCAGGGCCCATAGGCTGCAACTGTGACCCCCAAGGCAGCGTCAGCAGCCAGTGTGATGCTGCTGGTCAGTGCCAGTGCAAGGCCCAGGTGGAAGGCCTCACTTGCAGCCACTGCCGGCCCCACCACTTCCACCTGAGTGCCAGCAACCCAGACGGCTGCCTGCCCTGCTTCTGTATGGGCATCACCCAGCAGTGCGCCAGCTCTGCCTACACACGCCACCTGATCTCCACCCACTTTGCCCCTGGGGACTTCCAAGGCTTTGCCCTGGTGAACCCACAGCGAAACAGCCGCCTGACAGGAGAATTCACTGTGGAACCCGTGCCCGAGGGTGCCCAGCTCTCTTTTGGCAACTTTGCCCAACTCGGCCATGAGTCCTTCTACTGGCAGCTGCCGGAGACATACCAGGGAGACAAGGTGGCGGCCTACGGTGGGAAGTTGCGATACACCCTCTCCTACACAGCAGGCCCACAGGGCAGCCCACTCTCTGACCCCGATGTGCAGATCACGGGCAACAACATCATGCTAGTGGCCTCCCAGCCAGCGCTGCAGGGCCCTGAGAGGAGGAGCTACGAGATCATGTTCCGAGAGGAATTCTGGCGCCGGCCCGATGGGCAGCCGGCCACACGCGAGCACCTCCTGATGGCACTGGCCGACCTGGATGAGCTCCTGATCCGGGCCACGTTCTCCTCCGTGCCGCTGGCGGCCAGCATCAGCGCAGTCAGCCTGGAGGTCGCCCAGCCGGGGCCCTCAAACAGACCCCGCGCCCTCGAGGTGGAGGAGTGCCGCTGCCCGCCAGGCTACATCGGTCTGTCCTGCCAGGACTGTGCCCCCGGCTACACGCGCACCGGGAGTGGGCTCTACCTCGGCCACTGCGAGCTATGTGAATGCAATGGCCACTCAGACCTGTGCCACCCAGAGACTGGGGCCTGCTCGCAATGCCAGCACAACGCCGCAGGGGAGTTCTGCGAGCTTTGTGCCCCTGGCTACTACGGAGATGCCACAGCCGGGACGCCTGAGGACTGCCAGCCCTGTGCCTGCCCACTGACCAACCCAGAGAACATGTTTTCCCGCACCTGTGAGAGCCTGGGAGCCGGCGGGTACCGCTGCACGGCCTGCGAACCCGGCTACACTGGCCAGTACTGTGAGCAGTGTGGCCCAGGTTACGTGGGTAACCCCAGTGTGCAAGGGGGCCAGTGCCTGCCAGAGACAAACCAAGCCCCACTGGTGGTCGAGGTCCATCCTGCTCGAAGCATAGTGCCCCAAGGTGGCTCCCACTCCCTGCGGTGTCAGGTCAGTGGGAGCCCACCCCACTACTTCTATTGGTCCCGTGAGGATGGGCGGCCTGTGCCCAGCGGCACCCAGCAGCGACATCAAGGCTCCGAGCTCCACTTCCCCAGCGTCCAGCCCTCGGATGCTGGGGTCTACATTTGCACCTGCCGTAATCTCCACCAATCCAATACCAGCCGGGCAGAGCTGCTGGTCACTGAGGCTCCAAGCAAGCCCATCACAGTGACTGTGGAGGAGCAGCGGAGCCAGAGCGTGCGCCCCGGAGCTGACGTCACCTTCATCTGCACAGCCAAAAGCAAGTCCCCAGCCTATACCCTGGTGTGGACCCGCCTGCACAACGGGAAACTGCCCACCCGAGCCATGGATTTCAATGGCATCCTGACCATTCGCAACGTCCAGCTGAGTGATGCAGGCACCTACGTGTGCACCGGCTCCAACATGTTTGCCATGGACCAGGGCACAGCCACTCTACATGTGCAGGCCTCGGGCACCTTGTCCGCCCCCGTGGTCTCCATCCATCCGCCACAGCTCACAGTGCAGCCCGGGCAACTGGCGGAGTTCCGCTGCAGCGCCACAGGGAGCCCCACGCCCACCCTCGAGTGGACAGGGGGCCCCGGCGGCCAGCTCCCTGCGAAGGCACAAATCCACGGCGGCATCCTGCGCCTGCCAGCTGTCGAGCCCACGGATCAGGCCCAGTACTTGTGCCGAGCCCACAGCAGCGCTGGGCAGCAGGTGGCCAGGGCTGTGCTCCACGTGCATGGGGGCGGTGGGCCCAGAGTCCAAGTGAGCCCAGAGAGGACCCAGGTCCACGCAGGCCGCACCGTCAGGCTGTACTGCAGGGCTGCAGGCGTGCCTAGCGCCACCATCACCTGGAGGAAGGAAGGGGGCAGCCTCCCACCACAGGCCCGGTCAGAGCGCACAGACATCGCGACACTGCTCATCCCAGCCATCACGACTGCTGACGCCGGCTTCTACCTCTGCGTGGCCACCAGCCCTGCAGGCACTGCCCAGGCCCGGATCCAAGTGGTTGTCCTTTCAGCCTCAGATGCCAGCCCACCGCCGGTCAAGATTGAGTCCTCATCGCCTTCTGTGACAGAAGGGCAAACACTCGACCTCAACTGTGTGGTGGCAGGGTCAGCCCATGCCCAGGTCACCTGGTACAGGCGAGGGGGTAGCCTGCCTCCCCACACCCAGGTGCACGGCTCCCGTCTGCGGCTCCCCCAGGTCTCACCAGCTGATTCTGGAGAATATGTGTGCCGTGTGGAGAATGGATCGGGCCCCAAGGAGGCCTCCATTACTGTGTCTGTGCTCCACGGCACCCATTCTGGCCCCAGCTACACCCCAGTGCCCGGCAGCACCCGGCCCATCCGCATCGAGCCCTCCTCCTCACACGTGGCGGAAGGGCAGACCCTGGATCTGAACTGCGTGGTGCCCGGGCAGGCCCACGCCCAGGTCACGTGGCACAAGCGTGGGGGCAGCCTCCCTGCCCGGCACCAGACCCACGGCTCGCTGCTGCGGCTGCACCAGGTGACCCCGGCCGACTCAGGCGAGTATGTGTGCCATGTGGTGGGCACCTCCGGCCCCCTAGAGGCCTCAGTCCTGGTCACCATCGAAGCCTCTGTCATCCCTGGACCCATCCCACCTGTCAGGATCGAGTCTTCATCCTCCACAGTGGCCGAGGGCCAGACCCTGGATCTGAGCTGCGTGGTGGCAGGGCAGGCCCACGCCCAGGTCACATGGTACAAGCGTGGGGGCAGCCTCCCTGCCCGGCACCAGGTTCGTGGCTCCCGCCTGTACATCTTCCAGGCCTCACCTGCCGATGCGGGACAGTACGTCTGCCGGGCCAGCAACGGCATGGAGGCCTCCATCACGGTCACAGTAACTGGGACCCAGGGGGCCAACTTAGCCTACCCTGCCGGCAGCACCCAGCCCATCCGCATCGAGCCCTCCTCCTCGCAAGTGGCGGAAGGGCAGACCCTGGATCTGAACTGCGTGGTGCCCGGGCAGTCCCATGCCCAGGTCACGTGGCACAAGCGTGGGGGCAGCCTCCCTGTCCGGCACCAGACCCACGGCTCCCTGCTGAGACTCTACCAAGCGTCCCCCGCCGACTCGGGCGAGTACGTGTGCCGAGTGTTGGGCAGCTCCGTGCCTCTAGAGGCCTCTGTCCTGGTCACCATTGAGCCTGCGGGCTCAGTGCCTGCACTTGGGGTCACCCCCACGGTCCGGATCGAGTCATCGTCTTCGCAAGTGGCCGAGGGGCAGACCCTGGACCTGAACTGCCTCGTTGCTGGTCAGGCCCATGCCCAGGTCACGTGGCACAAGCGCGGGGGCAGCCTCCCGGCCCGGCACCAGGTGCATGGCTCGAGGCTACGCCTGCTCCAGGTGACCCCAGCTGATTCAGGGGAGTACGTGTGCCGTGTGGTCGGCAGCTCAGGTACCCAGGAAGCCTCAGTCCTTGTCACCATCCAGCAGCGCCTTAGTGGCTCCCACTCCCAGGGTGTGGCGTACCCCGTCCGCATCGAGTCCTCCTCAGCCTCCCTGGCCAATGGACACACCCTGGACCTCAACTGCCTGGTTGCCAGCCAGGCTCCCCACACCATCACCTGGTATAAGCGTGGAGGCAGCTTACCCAGCCGGCACCAGATCGTGGGCTCCCGGCTGCGGATCCCTCAGGTGACTCCGGCAGACTCGGGCGAGTACGTGTGTCACGTCAGTAACGGTGCAGGCTCCCGGGAGACCTCGCTCATCGTCACCATCCAGGGCAGCGGTTCCTCCCACGTGCCCAGCGTCTCCCCACCGATCAGGATCGAGTCGTCTTCCCCCACGGTGGTGGAAGGGCAGACCTTGGATCTGAACTGCGTGGTCGCCAGGCAGCCCCAGGCTATCATCACATGGTACAAGCGTGGGGGCAGCCTTCCCTCCCGACACCAGACCCATGGCTCCCACCTGCGGTTGCACCAAATGTCTGTGGCTGACTCGGGCGAGTATGTGTGCCGGGCCAACAACAACATCGATGCCCTGGAGGCCTCCATCGTCATCTCCGTCTCCCCTAGCGCCGGCAGCCCCTCCGCCCCTGGCAGCTCCATGCCCATCAGAATTGAGTCATCCTCCTCACACGTGGCCGAAGGGGAGACCCTGGATCTGAACTGCGTGGTCCCCGGGCAGGCCCATGCCCAGGTCACTTGGCACAAGCGTGGGGGCAGCCTCCCCAGTCACCATCAGACCCGCGGCTCACGGCTGCGGCTGCACCATGTGTCCCCGGCCGACTCGGGTGAATACGTGTGCCGGGTGATGGGCAGCTCTGGCCCCCTGGAGGCCTCAGTCCTGGTCACCATCGAAGCCTCTGGCTCAAGTGCTGTCCACGTCCCCGCCCCAGGTGGAGCCCCACCCATCCGCATCGAGCCCTCCTCCTCCCGAGTGGCAGAAGGGCAGACCCTGGATCTGAAGTGCGTGGTGCCCGGGCAGGCCCACGCCCAGGTCACGTGGCACAAGCGTGGAGGAAACCTCCCTGCCCGGCACCAGGTCCACGGCCCACTGCTGAGGCTGAACCAGGTGTCCCCGGCTGACTCTGGCGAGTACTCGTGCCAAGTGACCGGAAGCTCAGGCACCCTGGAGGCATCTGTCCTGGTCACAATTGAGCCCTCCAGCCCAGGACCCATTCCTGCTCCAGGACTGGCCCAGCCCATCTACATCGAGGCCTCCTCTTCACACGTGACTGAAGGGCAGACTCTGGATCTGAACTGTGTGGTGCCCGGGCAGGCCCATGCCCAGGTCACGTGGTACAAGCGCGGGGGCAGCCTCCCCGCCCGGCACCAGACCCATGGCTCCCAGCTGCGGCTCCACCTCGTCTCCCCTGCCGACTCAGGCGAGTATGTGTGTCGTGCAGCCAGCGGCCCAGGCCCTGAGCAAGAAGCCTCCTTCACAGTCACCGTCCCGCCCAGTGAGGGGTCTTCCTACCGCCTTAGGAGCCCGGTCATCTCCATCGACCCGCCCAGCAGCACCGTGCAGCAGGGCCAGGATGCCAGCTTCAAGTGCCTCATCCATGACGGGGCAGCCCCCATCAGCCTCGAGTGGAAGACCCGGAACCAGGAGCTGGAGGACAACGTCCACATCAGTCCCAATGGCTCCATCATCACCATCGTGGGCACCCGGCCCAGCAACCACGGTACCTACCGCTGCGTGGCCTCCAATGCCTACGGTGTGGCCCAGAGTGTGGTGAACCTCAGTGTGCACGGGCCCCCTACAGTGTCCGTGCTCCCCGAGGGCCCCGTGTGGGTGAAAGTGGGAAAGGCTGTCACCCTGGAGTGTGTCAGTGCCGGGGAGCCCCGCTCCTCTGCTCGTTGGACCCGGATCAGCAGCACCCCTGCCAAGTTGGAGCAGCGGACATATGGGCTCATGGACAGCCACGCGGTGCTGCAGATTTCATCAGCTAAACCATCAGATGCGGGCACTTATGTGTGCCTTGCTCAGAATGCACTAGGCACAGCACAGAAGCAGGTGGAGGTGATCGTGGACACGGGCGCCATGGCCCCAGGGGCCCCTCAGGTCCAAGCTGAAGAAGCTGAGCTGACTGTGGAGGCTGGACACACGGCCACCTTGCGCTGCTCAGCCACAGGCAGCCCCGCGCCCACCATCCACTGGTCCAAGCTGCGTTCCCCACTGCCCTGGCAGCACCGGCTGGAAGGTGACACACTCATCATACCCCGGGTAGCCCAGCAGGACTCGGGCCAGTACATCTGCAATGCCACTAGCCCTGCTGGGCACGCTGAGGCCACCATCATCCTGCACGTGGAGAGCCCACCATATGCCACCACGGTCCCAGAGCACGCTTCGGTGCAGGCAGGGGAGACGGTGCAGCTCCAGTGCCTGGCTCACGGGACACCCCCACTCACCTTCCAGTGGAGCCGCGTGGGCAGCAGCCTTCCTGGGAGGGCGACCGCCAGGAACGAGCTGCTGCACTTTGAGCGTGCAGCCCCTGAGGACTCAGGCCGCTACCGCTGCCGGGTCACCAACAAGGTGGGCTCAGCCGAGGCCTTTGCCCAGCTGCTCGTCCAAGGCCCTCCCGGCTCTCTCCCTGCCACCTCCATCCCAGCAGGGTCCACGCCCACCGTGCAGGTCACGCCTCAGCTAGAGACCAAGAGCATTGGGGCCAGCGTTGAGTTCCACTGTGCTGTGCCCAGCGACCGGGGTACCCAGCTCCGTTGGTTCAAGGAAGGGGGTCAGCTGCCTCCGGGTCACAGCGTGCAGGATGGGGTGCTCCGAATCCAGAACTTGGACCAGAGCTGCCAAGGGACGTATATATGCCAGGCCCATGGACCTTGGGGGAAGGCCCAGGCCAGTGCCCAGCTGGTTATCCAAGCCCTGCCCTCGGTGCTCATCAACATCCGGACCTCTGTGCAGACCGTGGTGGTTGGCCACGCCGTGGAGTTCGAATGCCTGGCACTGGGTGACCCCAAGCCTCAGGTGACATGGAGCAAAGTTGGAGGGCACCTGCGGCCAGGCATTGTGCAGAGCGGAGGTGTCGTCAGGATCGCCCACGTAGAGCTGGCTGATGCGGGACAGTATCGCTGCACTGCCACCAACGCAGCTGGCACCACACAATCCCACGTCCTGCTGCTTGTGCAAGCCTTGCCCCAGATCTCAATGCCCCAAGAAGTCCGTGTGCCTGCTGGTTCTGCAGCTGTCTTCCCCTGCATAGCCTCAGGCTACCCCACTCCTGACATCAGCTGGAGCAAGCTGGATGGCAGCCTGCCACCTGACAGCCGCCTGGAGAACAACATGCTGATGCTGCCCTCAGTCCGACCCCAGGACGCAGGTACCTACGTCTGCACCGCCACTAACCGCCAGGGCAAGGTCAAAGCCTTTGCCCACCTGCAGGTGCCAGAGCGGGTGGTGCCCTACTTCACGCAGACCCCCTACTCCTTCCTACCGCTGCCCACCATCAAGGATGCCTACAGGAAGTTCGAGATCAAGATCACCTTCCGGCCCGACTCAGCCGATGGGATGCTGCTGTACAATGGGCAGAAGCGAGTCCCAGGGAGCCCCACCAACCTGGCCAACCGGCAGCCCGACTTCATCTCCTTCGGCCTCGTGGGGGGAAGGCCCGAGTTCCGGTTCGATGCAGGCTCAGGCATGGCCACCATCCGCCATCCCACACCACTGGCCCTGGGCCATTTCCACACCGTGACCCTGCTGCGCAGCCTCACCCAGGGCTCCCTGATTGTGGGTGACCTGGCCCCGGTCAATGGGACCTCCCAGGGCAAGTTCCAGGGCCTGGATCTGAACGAGGAACTCTACCTGGGTGGCTATCCTGACTATGGTGCCATCCCCAAGGCGGGGCTGAGCAGCGGCTTCATAGGCTGTGTCCGGGAGCTGCGCATCCAGGGCGAGGAGATCGTCTTCCATGACCTCAACCTCACGGCGCACGGCATCTCCCACTGCCCCACCTGTCGGGACCGGCCCTGCCAGAATGGCGGTCAGTGCCATGACTCTGAGAGCAGCAGCTACGTGTGCGTCTGCCCAGCTGGCTTCACCGGGAGCCGCTGTGAGCACTCGCAGGCCCTGCACTGCCATCCAGAGGCCTGTGGGCCCGACGCCACCTGTGTGAACCGGCCTGACGGTCGAGGCTACACCTGCCGCTGCCACCTGGGCCGCTCGGGGTTGCGGTGTGAGGAAGGTGTGACAGTGACCACCCCCTCGCTGTCGGGTGCTGGCTCCTACCTGGCACTGCCCGCCCTCACCAACACACACCACGAGCTACGCCTGGACGTGGAGTTCAAGCCACTCGCCCCTGACGGGGTCCTGCTGTTCAGCGGGGGGAAGAGCGGGCCTGTGGAGGACTTCGTGTCCCTGGCGATGGTGGGCGGCCACCTGGAGTTCCGCTATGAGTTGGGGTCAGGGCTGGCCGTTCTGCGGAGCGCCGAGCCGCTGGCCCTGGGCCGCTGGCACCGTGTGTCTGCAGAGCGTCTCAACAAGGACGGCAGCCTGCGGGTGAATGGTGGACGCCCTGTGCTGCGCTCCTCGCCCGGCAAGAGCCAGGGCCTCAACCTGCACACCCTGCTCTACCTGGGGGGTGTGGAGCCTTCCGTGCCACTGTCCCCGGCCACCAACATGAGCGCTCACTTCCGCGGCTGTGTGGGCGAGGTGTCAGTGAATGGCAAACGGCTGGACCTCACCTACAGTTTCCTAGGCAGCCAGGGCATCGGGCAATGCTATGATAGCTCCCCATGTGAGCGCCAGCCTTGCCAACATGGTGCCACGTGCATGCCCGCTGGCGAGTATGAGTTCCAGTGCCTGTGTCGAGATGGATTCAAAGGAGACCTGTGTGAGCACGAGGAGAACCCCTGCCAGCTCCGTGAACCCTGTCTGCATGGGGGCACCTGCCAGGGCACCCGCTGCCTCTGCCTCCCTGGCTTCTCTGGCCCACGCTGCCAACAAGGCTCTGGACATGGCATAGCAGAGTCCGACTGGCATCTTGAAGGCAGCGGGGGCAATGATGCCCCTGGGCAGTACGGAGCCTATTTCCACGATGATGGCTTCCTCGCCTTCCCTGGCCATGTCTTCTCCAGGAGCCTGCCCGAGGTGCCCGAGACCATCGAGCTGGAGGTTCGGACCAGCACAGCCAGTGGCCTCCTGCTCTGGCAGGGTGTGGAGGTGGGAGAGGCCGGCCAAGGCAAGGACTTCATCAGCCTCGGGCTTCAAGACGGGCACCTTGTCTTCAGGTACCAGCTGGGTAGTGGGGAGGCCCGCCTGGTCTCTGAGGACCCCATCAATGACGGCGAGTGGCACCGGGTGACAGCACTGCGGGAGGGCCGCAGAGGTTCCATCCAAGTCGACGGTGAGGAGCTGGTCAGCGGCCGGTCCCCAGGTCCCAACGTGGCAGTCAACGCCAAGGGCAGCGTCTACATCGGCGGAGCCCCTGACGTGGCCACGCTGACCGGGGGCAGATTCTCCTCAGGCATCACAGGCTGTGTCAAGAACCTGGTGCTGCACTCGGCCCGACCCGGCGCCCCGCCCCCACAGCCCCTGGACCTGCAGCACCGCGCCCAGGCCGGGGCCAACACACGCCCCTGCCCCTCGTAG MGLPEPGPLRLLALLLLLLLLLLLQLQHLAAAAADPLLGGQGPAKDCEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQVCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDGSDERGCADPACGPREFRCGGDGGGACIPERWVCDRQFDCEDRSDEAAELCGRPGPGATSAPAACATASQFACRSGECVHLGWRCDGDRDCKDKSDEADCPLGTCRGDEFQCGDGTCVLAIKHCNQEQDCPDGSDEAGCLQGLNECLHNNGGCSHICTDLKIGFECTCPAGFQLLDQKTCGDIDECKDPDACSQICVNYKGYFKCECYPGYEMDLLTKNCKAAAGKSPSLIFTNRHEVRRIDLVKRNYSRLIPMLKNVVALDVEVATNRIYWCDLSYRKIYSAYMDKASDPKEQEVLIDEQLHSPEGLAVDWVHKHIYWTDSGNKTISVATVDGGRRRTLFSRNLSEPRAIAVDPLRGFMYWSDWGDQAKIEKSGLNGVDRQTLVSDNIEWPNGITLDLLSQRLYWVDSKLHQLSSIDFSGGNRKTLISSTDFLSHPFGIAVFEDKVFWTDLENEAIFSANRLNGLEISILAENLNNPHDIVIFHELKQPRAPDACELSVQPNGGCEYLCLPAPQISSHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASTMTRTVPATTRAPGTTVHRSTYQNHSTETPSLTAAVPSSVSVPRAPSISPSTLSPATSNHSQHYANEDSKMGSTVTAAVIGIIVPIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTTEEEDEDELHIGRTAQIGHVYPAVTHGLRAYDGLSLPEDIETVTASQMRWTHSYLSDDEDMLADSISGDDLGSGDLGSGDFQMVYFRALVNFTRSIEYSPQLEDAGSREFREVSEAVVDTLESEYLKIPGDQVVSVVFIKELDGWVFVELDVGSEGNADGAQIQEMLLRVISSGSVASYVTSPQGFQFRRLGTVPQFPRACTEAEFACHSYNECVALEYRCDRRPDCRDMSDELNCEEPVLGISPTFSLLVETTSLPPRPETTIMRQPPVTHAPQPLLPGSVRPLPCGPQEAACRNGHCIPRDYLCDGQEDCEDGSDELDCGPPPPCEPNEFPCGNGHCALKLWRCDGDFDCEDRTDEANCPTKRPEEVCGPTQFRCVSTNMCIPASFHCDEESDCPDRSDEFGCMPPQVVTPPRESIQASRGQTVTFTCVAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTLIIRDVKESDQGAYTCEAMNARGMVFGIPDGVLELVPQRGPCPDGHFYLEHSAACLPCFCFGITSVCQSTRRFRDQIRLRFDQPDDFKGVNVTMPAQPGTPPLSSTQLQIDPSLHEFQLVDLSRRFLVHDSFWALPEQFLGNKVDSYGGSLRYNVRYELARGMLEPVQRPDVVLMGAGYRLLSRGHTPTQPGALNQRQVQFSEEHWVHESGRPVQRAELLQVLQSLEAVLIQTVYNTKMASVGLSDIAMDTTVTHATSHGRAHSVEECRCPIGYSGLSCESCDAHFTRVPGGPYLGTCSGCNCNGHASSCDPVYGHCLNCQHNTEGPQCNKCKAGFFGDAMKATATSCRPCPCPYIDASRRFSDTCFLDTDGQATCDACAPGYTGRRCESCAPGYEGNPIQPGGKCRPVNQEIVRCDERGSMGTSGEACRCKNNVVGRLCNECADGSFHLSTRNPDGCLKCFCMGVSRHCTSSSWSRAQLHGASEEPGHFSLTNAASTHTTNEGIFSPTPGELGFSSFHRLLSGPYFWSLPSRFLGDKVTSYGGELRFTVTQRSQPGSTPLHGQPLVVLQGNNIILEHHVAQEPSPGQPSTFIVPFREQAWQRPDGQPATREHLLMALAGIDTLLIRASYAQQPAESRVSGISMDVAVPEETGQDPALEVEQCSCPPGYRGPSCQDCDTGYTRTPSGLYLGTCERCSCHGHSEACEPETGACQGCQHHTEGPRCEQCQPGYYGDAQRGTPQDCQLCPCYGDPAAGQAAHTCFLDTDGHPTCDACSPGHSGRHCERCAPGYYGNPSQGQPCQRDSQVPGPIGCNCDPQGSVSSQCDAAGQCQCKAQVEGLTCSHCRPHHFHLSASNPDGCLPCFCMGITQQCASSAYTRHLISTHFAPGDFQGFALVNPQRNSRLTGEFTVEPVPEGAQLSFGNFAQLGHESFYWQLPETYQGDKVAAYGGKLRYTLSYTAGPQGSPLSDPDVQITGNNIMLVASQPALQGPERRSYEIMFREEFWRRPDGQPATREHLLMALADLDELLIRATFSSVPLAASISAVSLEVAQPGPSNRPRALEVEECRCPPGYIGLSCQDCAPGYTRTGSGLYLGHCELCECNGHSDLCHPETGACSQCQHNAAGEFCELCAPGYYGDATAGTPEDCQPCACPLTNPENMFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGGQCLPETNQAPLVVEVHPARSIVPQGGSHSLRCQVSGSPPHYFYWSREDGRPVPSGTQQRHQGSELHFPSVQPSDAGVYICTCRNLHQSNTSRAELLVTEAPSKPITVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPTRAMDFNGILTIRNVQLSDAGTYVCTGSNMFAMDQGTATLHVQASGTLSAPVVSIHPPQLTVQPGQLAEFRCSATGSPTPTLEWTGGPGGQLPAKAQIHGGILRLPAVEPTDQAQYLCRAHSSAGQQVARAVLHVHGGGGPRVQVSPERTQVHAGRTVRLYCRAAGVPSATITWRKEGGSLPPQARSERTDIATLLIPAITTADAGFYLCVATSPAGTAQARIQVVVLSASDASPPPVKIESSSPSVTEGQTLDLNCVVAGSAHAQVTWYRRGGSLPPHTQVHGSRLRLPQVSPADSGEYVCRVENGSGPKEASITVSVLHGTHSGPSYTPVPGSTRPIRIEPSSSHVAEGQTLDLNCVVPGQAHAQVTWHKRGGSLPARHQTHGSLLRLHQVTPADSGEYVCHVVGTSGPLEASVLVTIEASVIPGPIPPVRIESSSSTVAEGQTLDLSCVVAGQAHAQVTWYKRGGSLPARHQVRGSRLYIFQASPADAGQYVCRASNGMEASITVTVTGTQGANLAYPAGSTQPIRIEPSSSQVAEGQTLDLNCVVPGQSHAQVTWHKRGGSLPVRHQTHGSLLRLYQASPADSGEYVCRVLGSSVPLEASVLVTIEPAGSVPALGVTPTVRIESSSSQVAEGQTLDLNCLVAGQAHAQVTWHKRGGSLPARHQVHGSRLRLLQVTPADSGEYVCRVVGSSGTQEASVLVTIQQRLSGSHSQGVAYPVRIESSSASLANGHTLDLNCLVASQAPHTITWYKRGGSLPSRHQIVGSRLRIPQVTPADSGEYVCHVSNGAGSRETSLIVTIQGSGSSHVPSVSPPIRIESSSPTVVEGQTLDLNCVVARQPQAIITWYKRGGSLPSRHQTHGSHLRLHQMSVADSGEYVCRANNNIDALEASIVISVSPSAGSPSAPGSSMPIRIESSSSHVAEGETLDLNCVVPGQAHAQVTWHKRGGSLPSHHQTRGSRLRLHHVSPADSGEYVCRVMGSSGPLEASVLVTIEASGSSAVHVPAPGGAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVSPADSGEYSCQVTGSSGTLEASVLVTIEPSSPGPIPAPGLAQPIYIEASSSHVTEGQTLDLNCVVPGQAHAQVTWYKRGGSLPARHQTHGSQLRLHLVSPADSGEYVCRAASGPGPEQEASFTVTVPPSEGSSYRLRSPVISIDPPSSTVQQGQDASFKCLIHDGAAPISLEWKTRNQELEDNVHISPNGSIITIVGTRPSNHGTYRCVASNAYGVAQSVVNLSVHGPPTVSVLPEGPVWVKVGKAVTLECVSAGEPRSSARWTRISSTPAKLEQRTYGLMDSHAVLQISSAKPSDAGTYVCLAQNALGTAQKQVEVIVDTGAMAPGAPQVQAEEAELTVEAGHTATLRCSATGSPAPTIHWSKLRSPLPWQHRLEGDTLIIPRVAQQDSGQYICNATSPAGHAEATIILHVESPPYATTVPEHASVQAGETVQLQCLAHGTPPLTFQWSRVGSSLPGRATARNELLHFERAAPEDSGRYRCRVTNKVGSAEAFAQLLVQGPPGSLPATSIPAGSTPTVQVTPQLETKSIGASVEFHCAVPSDRGTQLRWFKEGGQLPPGHSVQDGVLRIQNLDQSCQGTYICQAHGPWGKAQASAQLVIQALPSVLINIRTSVQTVVVGHAVEFECLALGDPKPQVTWSKVGGHLRPGIVQSGGVVRIAHVELADAGQYRCTATNAAGTTQSHVLLLVQALPQISMPQEVRVPAGSAAVFPCIASGYPTPDISWSKLDGSLPPDSRLENNMLMLPSVRPQDAGTYVCTATNRQGKVKAFAHLQVPERVVPYFTQTPYSFLPLPTIKDAYRKFEIKITFRPDSADGMLLYNGQKRVPGSPTNLANRQPDFISFGLVGGRPEFRFDAGSGMATIRHPTPLALGHFHTVTLLRSLTQGSLIVGDLAPVNGTSQGKFQGLDLNEELYLGGYPDYGAIPKAGLSSGFIGCVRELRIQGEEIVFHDLNLTAHGISHCPTCRDRPCQNGGQCHDSESSSYVCVCPAGFTGSRCEHSQALHCHPEACGPDATCVNRPDGRGYTCRCHLGRSGLRCEEGVTVTTPSLSGAGSYLALPALTNTHHELRLDVEFKPLAPDGVLLFSGGKSGPVEDFVSLAMVGGHLEFRYELGSGLAVLRSAEPLALGRWHRVSAERLNKDGSLRVNGGRPVLRSSPGKSQGLNLHTLLYLGGVEPSVPLSPATNMSAHFRGCVGEVSVNGKRLDLTYSFLGSQGIGQCYDSSPCERQPCQHGATCMPAGEYEFQCLCRDGFKGDLCEHEENPCQLREPCLHGGTCQGTRCLCLPGFSGPRCQQGSGHGIAESDWHLEGSGGNDAPGQYGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGANTRPCPS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29922 GPD1L::EDEM1 ENSG00000152642.11::ENSG00000134109.11 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 887 FALSE NA FALSE NA GPD1L ENSG00000152642.11 protein_coding + + chr3:32105689-32168709:+ chr3:32146734:+ chr3:32147181-32210201:+ chr3:32188226:+ EDEM1 ENSG00000134109.11 protein_coding + + chr3:5187646-5219958:+ chr3:5213319:+ chr3:5229331-5261643:+ chr3:5255004:+ chr3:32148823,chr3:32148824 chr3:5212072,chr3:5212070 NA NA chr3:32190315,chr3:32190316 chr3:5253757,chr3:5253755 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NAD_Gly3P_dh_N|7-174|5.7e-51^F420_oxidored|7-108|4.2e-05^NAD_Gly3P_dh_C|195-341|8e-51^GPD_NAD_C_bact|258-327|4e-07^F420_oxidored|275-292|2.5^NAD_Gly3P_dh_N|282-308|0.44 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:26.89Mb] 17 12 17 12 ONLY_REF_SPLICE YES_LDAS 0.2943 GT 1.8323 AG 1.9329 ENST00000282541.10 1-618 ENST00000256497.9 1681-1974 chr3|+|[0]32106712-32106758[1]|[2]32128076-32128253[2]|[0]32138587-32138727[2]|[0]32140228-32140366[0]|[1]32146622-32146734[2]<==>chr3|+|[0]5213319-5213522[2]|[0]5215829-5215918[2] atggcagcggcgcccctgaaagtgtgcatcgtgggctcggggaactggggttcagctgttgcaaaaataattggtaataatgtcaagaaacttcagaaatttgcctccacagtcaagatgtgggtctttgaagaaacagtgaatggcagaaaactgacagacatcataaataatgaccatgaaaatgtaaaatatcttcctggacacaagctgccagaaaatgtggttgccatgtcaaatcttagcgaggctgtgcaggatgcagacctgctggtgtttgtcattccccaccagttcattcacagaatctgtgatgagatcactgggagagtgcccaagaaagcgctgggaatcaccctcatcaagggcatagacgagggccccgaggggctgaagctcatttctgacatcatccgtgagaagatgggtattgacatcagtgtgctgatgggagccaacattgccaatgaggtggctgcagagaagttctgtgagaccaccatcggcagcaaagtaatggagaacggccttctcttcaaagaacttctgcagactccaaattttcgaattaccgtggttgatgatgcagacactgttgaactctgtggtgcgcttaagCTGTTTGATGAAGACAATCCAGTACACAAGTCTGGAACCAGATACATGTTCACAACAGAGGGACACATTGTATCTGTGGATGAGCATCTTCGGGAATTGCCATGGAAGGAATTCTTCTCTGAAGAGGGAGGGCAGGACCAAGGGGGAAAGTCTGTGCACAGGCCGAAACCTCATGAGTTAAAAGTCATCAACTCCAGCTCCAACTGCAATCGTGTACCTGATGAGAGGAGGTACTCCCTGCCCTTAAAGAGCATCTACATGCGACAGATTGACCAGATGGTTGGTTTGATTTGA MAAAPLKVCIVGSGNWGSAVAKIIGNNVKKLQKFASTVKMWVFEETVNGRKLTDIINNDHENVKYLPGHKLPENVVAMSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALGITLIKGIDEGPEGLKLISDIIREKMGIDISVLMGANIANEVAAEKFCETTIGSKVMENGLLFKELLQTPNFRITVVDDADTVELCGALKLFDEDNPVHKSGTRYMFTTEGHIVSVDEHLRELPWKEFFSEEGGQDQGGKSVHRPKPHELKVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVGLI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29923 SACM1L::TRAK1 ENSG00000211456.14::ENSG00000182606.17 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 891 FALSE NA FALSE NA SACM1L ENSG00000211456.14 protein_coding + + chr3:45689056-45745412:+ chr3:45732151:+ chr3:45730548-45786904:+ chr3:45773643:+ TRAK1 ENSG00000182606.17 protein_coding + + chr3:42013802-42225890:+ chr3:42176814:+ chr3:42055294-42267382:+ chr3:42218306:+ chr3:45734782,chr3:45734778 chr3:42160442,chr3:42160437 NA NA chr3:45776274,chr3:45776270 chr3:42201934,chr3:42201929 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Syja_N|58-345|2.2e-92^Transglut_core3|337-417|6.3e-05^DSS1_SEM1|422-444|4.1e-05 HAP1_N-PARTIAL|~287-353|1.7e-144^KASH_CCD-PARTIAL|~287-351|0.0014^TSC22-PARTIAL|~287-311|0.00076^DUF1664-PARTIAL|~287-297|0.19^bZIP_1|290-324|0.019^DUF1664|299-354|0.00016^bZIP_1|319-353|0.21^TSC22|328-359|0.028^Milton|414-583|4.7e-77^Milton|792-833|3.5 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:3.46Mb] 16 5 16 4.7 ONLY_REF_SPLICE YES_LDAS 0.2101 GT 1.7465 AG 1.7465 ENST00000706807.1 1-1100 ENST00000327628.10 287-2862 chr3|+|[0]45689466-45689497[1]|[2]45703438-45703535[0]|[1]45705135-45705209[0]|[1]45706780-45706907[2]|[0]45709498-45709647[2]|[0]45713137-45713196[2]|[0]45714046-45714079[0]|[1]45719500-45719601[0]|[1]45722000-45722085[2]|[0]45722869-45722955[2]|[0]45723475-45723543[2]|[0]45731301-45731380[1]|[2]45732053-45732151[1]<==>chr3|+|[1]42176814-42176890[2]|[0]42184685-42184801[2]|[0]42188045-42188145[1]|[2]42189016-42189124[2]|[0]42191558-42191636[0]|[1]42193075-42193205[2]|[0]42193824-42193898[2]|[0]42194804-42194941[2]|[0]42199177-42199253[1]|[2]42200818-42201054[1]|[2]42202436-42202752[0]|[1]42209767-42209985[0]|[1]42219494-42219596[1]|[2]42222942-42223737[2] atggcgacggcggcctacgagcagctgaagctgcatatcacacctgaaaaattttatgtggaagcttgtgatgatggagcagatgacgtacttaccattgaccgtgtgtccacagaggttacccttgcagtcaagaaagatgttcctccttcagctgtcacaagaccaatatttggtatactgggcacaatccatctggtggcaggtaattatcttatagtcattaccaaaaagataaaagtaggtgaatttttcagtcatgtagtctggaaagcaacagattttgatgtcctttcttataagaagacaatgttgcacttaactgatattcagttacaagataataaaaccttcctagcgatgctaaaccatgtcttgaatgtggatggattttacttttcaacaacatatgatttgacccatactttgcagcggctatccaacactagtcctgaattccaagaaatgagtctcttggaaagggcagatcagcggtttgtatggaatggtcatcttctaagagaactttctgcacagccagaggttcatcggtttgcccttccagtgttacatggctttattaccatgcattcatgttctattaatggaaaatactttgattggattctcatctcgaggaggagctgtttcagagctggtgtgcgctattatgtaagaggaattgattcggaaggccatgcagctaactttgtagaaacagaacaaattgtgcactacaatgggagcaaagcttcgtttgtacagactcgaggatcaatacctgttttctggtcccaaagaccaaacctcaagtacaaaccactgccacagatcagcaaagtagcaaatcacatggacggtttccaaaggcattttgattcccaagtaattatttatggaaaacaagttataatcaatctgattaaccagaagggctcggagaagccacttgagcagacatttgcaacaatggtgtcttccttgggaagtggaatgatgagatacattgcctttgacttccataaggaatgtaaaaatatgagatgggatcgactaagtattttattggatcaggtagcagaaatgcaagatgaattaagTTTTATGTGCTGAAAGAGTTGGCCAGATGACTAAGACATATAATGACATAGATGCTGTCACTCGGCTTCTTGAGGAGAAAGAGCGGGATTTAGAATTGGCCGCTCGCATCGGCCAGTCGTTGTTGAAGAAGAACAAGACCCTAACCGAGAGGAACGAGCTGCTGGAGGAGCAGGTGGAACACATCAGGGAGGAGGTGTCTCAGCTCCGGCATGAGCTGTCCATGAAGGATGAGCTGCTTCAGTTCTACACCAGCGCTGCGGAGGAGAGTGAGCCCGAGTCCGTTTGCTCAACCCCGTTGAAGAGGAATGAGTCGTCCTCCTCAGTCCAGAATTACTTTCATTTGGATTCTCTTCAAAAGAAGCTGAAAGACCTTGAAGAGGAGAATGTTGTACTTCGATCCGAGGCCAGCCAGCTGAAGACAGAGACCATCACCTATGAGGAGAAGGAGCAGCAGCTGGTCAATGACTGCGTGAAGGAGCTGAGGGATGCCAATGTCCAGATTGCTAGTATCTCAGAGGAACTGGCCAAGAAGACGGAAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCTATCGCAAATAGTTGATTTGCAGAAAAAGGCAAAAGCTTGCGCAGTGGAAAATGAAGAACTTGTCCAGCATCTGGGGGCTGCTAAGGATGCCCAGCGGCAGCTCACAGCCGAGCTGCGTGAGCTGGAGGACAAGTACGCAGAGTGCATGGAGATGCTGCATGAGGCGCAGGAGGAGCTGAAGAACCTCCGGAACAAAACCATGCCCAATACCACGTCTCGGCGCTACCACTCACTGGGCCTGTTTCCCATGGATTCCTTGGCAGCAGAGATTGAGGGAACGATGCGCAAGGAGCTGCAGTTGGAAGAGGCCGAGTCTCCAGACATCACTCACCAGAAGCGTGTCTTTGAGACAGTAAGAAACATCAACCAGGTTGTCAAGCAGAGATCTCTGACCCCTTCTCCCATGAACATCCCCGGCTCCAACCAGTCCTCGGCCATGAACTCCCTCCTGTCCAGCTGCGTCAGCACCCCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGTCCTCGACAACAAGACCAACAGCATCATTCTGGAAACAGAGGCAGCCGACCTGGGAAACGATGAGCGGAGTAAGAAGCCGGGGACGCCGGGCACCCCAGGCTCCCACGACCTGGAGACGGCGCTGAGGCGGCTGTCCCTGCGCCGGGAGAACTACCTCTCGGAGAGGAGGTTCTTTGAGGAGGAGCAAGAGAGGAAGCTCCAGGAGCTGGCGGAGAAGGGCGAGCTGCGCAGCGGCTCCCTCACACCCACTGAGAGCATCATGTCCCTGGGCACGCACTCCCGCTTCTCCGAGTTCACCGGCTTCTCTGGCATGTCCTTCAGCAGCCGCTCCTACCTGCCTGAGAAGCTCCAGATCGTGAAGCCGCTGGAAGGTTCCGCCACACTTCACCACTGGCAGCAGTTGGCCCAACCTCACCTTGGGGGCATCCTGGACCCCCGGCCCGGTGTGGTCACCAAGGGCTTCCGGACGCTGGATGTTGACCTGGACGAAGTGTACTGCCTTAACGACTTTGAAGAAGATGACACAGGTGACCACATTTCTCTCCCACGCCTAGCTACCTCCACTCCAGTTCAGCACCCAGAGACCTCAGCGCACCATCCTGGGAAGTGCATGTCTCAGACCAACTCCACCTTCACCTTCACCACCTGTCGCATCCTGCATCCTTCAGATGAGCTCACTCGGGTCACACCAAGCCTTAACTCAGCCCCAACTCCAGCTTGTGGCAGCACCAGCCACTTGAAATCCACGCCGGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCTGAGTCCTTCACTAACACCCGTGAGTCCACGACCACCATGAGCACATCCCTGGGGCTCGTGTGGCTGTTGAAGGAGCGGGGCATTTCTGCTGCCGTGTACGACCCCCAGAGCTGGGACAGGGCCGGCCGGGGCTCCCTCCTGCACTCCTACACGCCCAAGATGGCTGTGATCCCCTCTACTCCGCCGAACTCGCCTATGCAGACACCCACATCCTCCCCACCCTCCTTTGAGTTCAAGTGCACGAGCCCTCCCTACGACAATTTCCTGGCTTCCAAGCCAGCCAGCTCCATCCTGAGGGAAGTGAGAGAAAAGAACGTCCGCAGCAGCGAGAGCCAGACCGACGTGTCCGTCTCCAACCTCAACCTCGTGGACAAAGTCAGGAGGTTTGGGGTGGCCAAAGTGGTGAACTCAGGGCGAGCCCATGTCCCCACCTTGACTGAGGAGCAGGGACCCCTCCTCTGTGGGCCCCCGGGGCCAGCACCAGCCCTTGTTCCCAGAGGCCTGGTACCTGAGGGCCTGCCCCTCAGATGCCCCACTGTCACCAGTGCCATCGGTGGGCTGCAGCTCAATAGTGGCATCCGGCGGAATCGCAGCTTCCCCACCATGGTGGGATCTAGCATGCAGATGAAAGCTCCTGTGACTCTCACCTCGGGCATCTTGATGGGTGCTAAGCTCTCCAAACAAACTAGCTTACGGTGA MATAAYEQLKLHITPEKFYVEACDDGADDVLTIDRVSTEVTLAVKKDVPPSAVTRPIFGILGTIHLVAGNYLIVITKKIKVGEFFSHVVWKATDFDVLSYKKTMLHLTDIQLQDNKTFLAMLNHVLNVDGFYFSTTYDLTHTLQRLSNTSPEFQEMSLLERADQRFVWNGHLLRELSAQPEVHRFALPVLHGFITMHSCSINGKYFDWILISRRSCFRAGVRYYVRGIDSEGHAANFVETEQIVHYNGSKASFVQTRGSIPVFWSQRPNLKYKPLPQISKVANHMDGFQRHFDSQVIIYGKQVIINLINQKGSEKPLEQTFATMVSSLGSGMMRYIAFDFHKECKNMRWDRLSILLDQVAEMQDELSFMC*KSWPDD*DI**HRCCHSAS*GERAGFRIGRSHRPVVVEEEQDPNREERAAGGAGGTHQGGGVSAPA*AVHEG*AASVLHQRCGGE*ARVRLLNPVEEE*VVLLSPELLSFGFSSKEAERP*RGECCTSIRGQPAEDRDHHL*GEGAAAGQ*LREGAEGCQCPDC*YLRGTGQEDGRCCPPARGDHTPAIANS*FAEKGKSLRSGK*RTCPASGGC*GCPAAAHSRAA*AGGQVRRVHGDAA*GAGGAEEPPEQNHAQYHVSALPLTGPVSHGFLGSRD*GNDAQGAAVGRGRVSRHHSPEACL*DSKKHQPGCQAEISDPFSHEHPRLQPVLGHELPPVQLRQHPPVQLLRQRHRQRRPRQQDQQHHSGNRGSRPGKR*AE*EAGDAGHPRLPRPGDGAEAAVPAPGELPLGEEVL*GGAREEAPGAGGEGRAAQRLPHTH*EHHVPGHALPLLRVHRLLWHVLQQPLLPA*EAPDREAAGRFRHTSPLAAVGPTSPWGHPGPPARCGHQGLPDAGC*PGRSVLP*RL*RR*HR*PHFSPTPSYLHSSSAPRDLSAPSWEVHVSDQLHLHLHHLSHPASFR*AHSGHTKP*LSPNSSLWQHQPLEIHAGGHTMHSTETEPG*VLH*HP*VHDHHEHIPGARVAVEGAGHFCCRVRPPELGQGRPGLPPALLHAQDGCDPLYSAELAYADTHILPTLL*VQVHEPSLRQFPGFQASQLHPEGSERKERPQQREPDRRVRLQPQPRGQSQEVWGGQSGELRASPCPHLD*GAGTPPLWAPGASTSPCSQRPGT*GPAPQMPHCHQCHRWAAAQ*WHPAESQLPHHGGI*HADESSCDSHLGHLDGC*ALQTN*LTV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29924 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 881 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11106901:- chrX:10865697-11129340:- chrX:11125021:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 15 20 15 3.9 ONLY_REF_SPLICE YES_LDAS 0.1918 GT 1.8295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29926 PHRF1::ENSG00000289997 ENSG00000070047.13::ENSG00000289997.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1519 TRUE 599 PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:581597:+ chr11:576470-612222:+ chr11:581597:+ ENSG00000289997 ENSG00000289997.1 lncRNA + + chr11:518991-532262:+ chr11:528159:+ chr11:518991-532262:+ chr11:528159:+ chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA chr11:581838,chr11:581836 chr11:526460,chr11:526455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 47 14 4.3 ONLY_REF_SPLICE YES_LDAS 0.1857 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29927 ZNF852::LZTFL1 ENSG00000178917.18::ENSG00000163818.20 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 884 TRUE 1525 TRUE 602 ZNF852 ENSG00000178917.18 protein_coding - - chr3:44491880-44510636:- chr3:44510553:- chr3:44533372-44552128:- chr3:44552045:- LZTFL1 ENSG00000163818.20 protein_coding - - chr3:45823316-45916042:- chr3:45835784:- chr3:45864808-45957534:- chr3:45877276:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.31Mb] 13 0 13 0 ONLY_REF_SPLICE YES_LDAS 0.1319 GT 1.6402 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29935 TBC1D5::CAPN7 ENSG00000131374.15::ENSG00000131375.10 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 892 FALSE NA FALSE NA TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17622648:- chr3:17198654-18486309:- chr3:17664140:- CAPN7 ENSG00000131375.10 protein_coding + + chr3:15206152-15252916:+ chr3:15212104:+ chr3:15247659-15294423:+ chr3:15253611:+ chr3:17612670 chr3:15210222 NA NA chr3:17654162 chr3:15251729 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.90Mb] 10 6 10 4.83 ONLY_REF_SPLICE YES_LDAS 0.1505 GT 1.9899 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29939 PHEX::FANCB ENSG00000102174.10::ENSG00000181544.16 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 894 FALSE NA FALSE NA PHEX ENSG00000102174.10 protein_coding + + chrX:22032325-22494713:+ chrX:22114586:+ chrX:22050443-22512830:+ chrX:22132704:+ FANCB ENSG00000181544.16 protein_coding - - chrX:14690388-14873255:- chrX:14797298:- chrX:14708510-14891377:- chrX:14815420:- chrX:22127649,chrX:22127644 chrX:14814801,chrX:14814806 NA NA chrX:22145766,chrX:22145761 chrX:14832923,chrX:14832928 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Peptidase_M13_N|76-479|2.6e-115^Peptidase_M13|454-486|0.66^Peptidase_M13|538-741|5.2e-71^Lambda_Kil|635-661|4.1e-05 none INTRACHROMOSOMAL[chrX:7.16Mb] 9 8 9 7.8 ONLY_REF_SPLICE YES_LDAS 0.1704 GT 1.3996 AG 1.8892 ENST00000379374.5 1-1302 ENST00000696353.1 2488-2790 chrX|+|[0]22033006-22033123[0]|[1]22038469-22038537[0]|[1]22047050-22047211[0]|[1]22076388-22076474[0]|[1]22077476-22077702[2]|[0]22090429-22090497[2]|[0]22093983-22094099[2]|[0]22096955-22097038[2]|[0]22099006-22099151[1]|[2]22111467-22111560[2]|[0]22114458-22114586[2]<==>chrX|-|[2]14796267-14796300[2]|[1]14796770-14796921[0]|[2]14797182-14797298[0] atggaagcagaaacagggagcagcgtggagactggaaagaaggccaacagaggcactcgaattgccctggtcgtgtttgtcggtggcaccctagttctgggcacgatcctctttctagtgagtcaaggtctcttaagtctccaagctaaacaggagtactgcctgaagccagaatgcatcgaagcggctgctgccatcttaagtaaagtaaatctgtctgtggatccttgtgataatttcttccggttcgcttgtgatggctggataagcaataatccaattcccgaagatatgccaagctatggggtttatccttggctgagacataatgttgacctcaagttgaaggaacttttggagaaatcaatcagtagaaggcgggacaccgaagccatacagaaagccaaaatcctttattcatcctgcatgaatgagaaagcgattgaaaaagcagatgccaagccactgctacacatcctacggcattcacctttccgctggcccgtgcttgaatctaatattggccctgaaggggtttggtcagagagaaagttcagccttctgcagacacttgcaacgtttcgtggtcaatacagcaattctgtgttcatccgtttgtatgtgtcccctgatgacaaagcatccaatgaacatatcttgaagctggaccaagcaacactctccctggccgtgagggaagactaccttgataacagtacagaagccaagtcttatcgggatgccctttacaagttcatggtggatactgccgtgcttttaggagctaacagttccagagcagagcatgacatgaagtcagtgctcagattggaaattaagatagctgagataatgattccacatgaaaaccgaaccagcgaggccatgtacaacaaaatgaacatttctgaactgagtgctatgattccccagttcgactggctgggctacatcaagaaggtcattgacaccagactctacccccatctgaaagacatcagcccctccgagaatgtggtggtccgcgtcccgcagtactttaaagatttgtttaggatattagggtctgagagaaagaagaccattgccaactatttggtgtggagaatggtttattccagaattccaaaccttagcaggcgctttcagtatagatggctggaattctcaagggtaatccaggggaccacaactttgctgcctcaatgggacaaatgtgtaaactttattgaaagtgccctcccttatgttgttggaaagatgtttgtagatgtgtacttccaggaagataagaaggaaatgATCACATGTTTTGGGGAAAGCCAGCCAACCTGCCATGAGGACACTCAAGCAGCCCTAGGAAGAGTCCTACCTTGCAAAGATCTGAGGCCTCCTGCTAACAGCCAGCAAGGAATTGAGAACTCCAACTGCCAGCTTTTGGGCTGGAATCAACACCACCAGCTCTCCTGGTTCTCAGGTCTTCAGACTTGGACTGGAACTATATCATTGGCTCTCCTGGATCTCCAGCTTGCTGACTGCAGATCTTGGGACTACTCAGCTTCGATAATCATCCACGTTGGAAACCCCAGTCAAGCCTTCAGATGA MEAETGSSVETGKKANRGTRIALVVFVGGTLVLGTILFLVSQGLLSLQAKQEYCLKPECIEAAAAILSKVNLSVDPCDNFFRFACDGWISNNPIPEDMPSYGVYPWLRHNVDLKLKELLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSPDDKASNEHILKLDQATLSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDISPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVDVYFQEDKKEMITCFGESQPTCHEDTQAALGRVLPCKDLRPPANSQQGIENSNCQLLGWNQHHQLSWFSGLQTWTGTISLALLDLQLADCRSWDYSASIIIHVGNPSQAFR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29942 TRANK1::ULK4 ENSG00000168016.15::ENSG00000168038.11 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 896 FALSE NA FALSE NA TRANK1 ENSG00000168016.15 protein_coding - - chr3:36826819-36945057:- chr3:36842622:- chr3:36868310-36986548:- chr3:36884113:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41398264:- chr3:41288090-42003622:- chr3:41439755:- chr3:36838672,chr3:36838681 chr3:41405308,chr3:41405314 NA NA chr3:36880163,chr3:36880172 chr3:41446799,chr3:41446805 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TPR_2|15-44|0.0059^TPR_11|22-44|0.012^TPR_1|22-44|0.019^MIT|27-50|0.00048^TPR_8|35-49|2.6^TPR_17|59-78|9.9^TPR_2|61-92|0.00023^TPR_8|61-91|0.007^TPR_1|61-92|0.0047^TPR_11|67-105|8.7e-05^TPR_17|82-112|0.00081^TPR_2|94-116|0.23^TPR_1|94-122|0.15^PPR|169-184|6.8^Clathrin|171-236|1.4^Ank_2|228-320|1.1e-05^Ank|228-240|9.9^Ank_4|251-296|0.0011^Ank|284-322|0.00014^AAA_22|367-413|8.9^Ank_4|512-551|0.0014^Clathrin|515-534|5.1^Ank_2|517-550|0.0032^Ank_2|517-620|7.4e-06^Ank|518-536|1.2^Ank|542-550|0.11^Ank_4|583-611|0.013^Ank|590-611|1.7^Ank_4|592-629|0.2^PPR|592-618|0.01^UvrD-helicase|1070-1090|2.1^AAA_19|1071-1087|0.079^AAA_22|1072-1087|0.0012^UvrD-helicase|1382-1471|6.3e-07^AAA_22|1396-1456|0.68^AAA_19|1437-1473|0.01^UvrD_C|1508-1527|0.11^UvrD_C_2|1603-1621|0.00018^UvrD_C|1604-1700|4.9e-07^UvrD_C_2|1683-1700|0.00028^TPR_2|1744-1768|0.004^Clathrin|1753-1774|0.45^TPR_8|1798-1810|4.2^Clathrin|1801-1873|0.00062^TPR_1|1801-1824|3^UvrD-helicase|1803-1821|4.3^TPR_2|1831-1849|0.47^TPR_1|1831-1849|1.3^UvrD_C|1843-1938|3.6^TPR_2|1844-1864|0.35^TPR_1|1847-1866|2.5^PPR|1848-1866|3.3^MIT|1853-1853|2.4^TPR_1|1859-1873|5.1^PPR|1871-1882|1.9^Clathrin|1911-1980|0.013^TPR_2|2030-2054|1.3^PPR|2230-2243|4^UvrD-helicase|2804-2887|1.5^UvrD_C|2815-2923|0.078 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:4.30Mb] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1116 GT 1.9329 AG 1.9086 ENST00000645898.2 1-5280 ENST00000301831.9 3493-3828 chr3|-|[2]36842622-36842710[1]|[0]36846248-36846404[0]|[2]36847200-36847346[0]|[2]36851719-36851856[0]|[2]36852146-36852345[1]|[0]36855173-36858049[1]|[0]36858718-36858894[1]|[0]36860906-36861160[1]|[0]36864319-36864480[1]|[0]36874126-36874296[1]|[0]36889829-36889960[1]|[0]36892202-36892340[0]|[2]36892901-36892984[0]|[2]36895640-36895758[1]|[0]36899109-36899259[0]|[2]36903149-36903275[2]|[1]36908323-36908454[2]|[1]36944787-36944809[0]<==>chr3|-|[2]41246929-41246992[2]|[1]41249489-41249574[0]|[2]41398079-41398264[0] atgtgggacccgcgggcagctaggatggacctgacagcttacgctgagctgctgaaagaatccggcaaccaggttcttaagaatgggaacttctctttggccatcagaaagtacgatgaagccatccagattctcctgcagttataccagtggggggttcccccgagggacttggctgtgctgctgtgcaacaaatcaaatgcatttttcagccttgggaagtggaatgaggcatttgttgctgccaaggaatgtctccaatgggatccaacctacgtgaagggatactaccgagctggttattccttgctgaggttgcaccagccttacgaagccgctcgcatgttttttgagggtctgcgacttgtgcagagaagccaagaccaggcaccggttgctgatttccttgttggagtcttcaccactatgagcagtgactccattgttttgcaaagtttcttgccttgctttgatcatattttcacaactggattcccaacagaagtgtggcaatctgtaatagaaaagttggcaaagaaaggattatggcattcatttctgcttctgtcagcaaaaaaagaccgattaccaagaaatattcatgtcccagagttatcactgaaaagtctctttgagaaatacgttttcattggactttatgagaagatggaacaagtgcccaagttagtccagtggctcatctccattggtgcaagtgttgagactataggaccgtatccccttcatgccctcatgcgactctgtatccaagccagagaaaaccatcttttccggtggttaatggatcacaagcccgagtggaaaggccgcattaaccagaaggatggggatggctgcactgtcctgcacgtcgtcgctgcccactccccaggatacctcgttaagcgacaaacagaggatgtgcagatgctcctgcgctttggggcagatcccactttgctggatcgacagtctcggtctgttgtggatgtcctgaagaggaataagaacttcaaagccatcgagaaaatcaacagtcacttagaaaagctagctacgtgttctaaggacctatcaggattcagcaatggtgatggacccactagtgaaaacgacattttcaggaaggtcttggagcagctggtgaagtatatgaactcaggaaaccggttattgcataaaaactttctgaagcaggaagtagttcagaggttcttgcgtctcctttctactctgcaagaaattcctcctgacctggtctgtgatattaatcaagactgtgccaccaccgtcttcaaattcttattggaaaaacagagatggcctgaggtgcttctgctgctgacccgcaaagtaagtggagaaccaccgcttggggattgcctcatcaaagactgcaacttctcagacctcgacatctgtaccatcatcccccatctcagcacctgggaccagcggaagaaacagcttctgggctgcctgatagacagtggagccttgcctgatggtcttcaggagagccaggagaggccagttgtcacgtgcctgaaacatgaggacttcgagttggctttccttctcttgaccaagggcgcagacccccgtgctatttctctcacggaaggtgatactcctttgcatgcagcactccacatctttctagagattaaagctgacattggttttagcttcctcagccatctgttggatctgttttggtccaaccccactgaattcgactacctcaaccccaatgtccaggacagcaatgggaacacgctgatgcacatcctcttccagaagggcatgctaaagcgcgtgaagaagctgttagacctgctggtgaagtttgacatcaacttcaatctgaagaacaaagagggcaaagatgcacggcaccggattaagaagaacgactctctgctcttggcctggaacaaagctctgatggagaacaggaggaggagccggcaggactctgctgcccacctggggaagctctcaaagtccactgcccctggtcacacatctcagctcaagtcccagggttcattcaagtcagtgccatgtggtgccactgccagaacactgcctgaaggaagtgcagtccctgacagctgggagactctcccaggtacccaggtgaccaggaaggagcctggagctctcaggccctgctcgctgagagactgccttatgcaggacatcacagttttgattcagcaggttgaagtggatccgtctttcccagaggactgtcttcagagctctgagcctctggaggcaggagctggcaaagaaggaaagaaagatgacaagccgactctgggtgcaggggcccctgactgtagtgaggtgggggaaggacatgctcaggtgggccttggggccttgcagcttgtgcctgatgataacagggggaaggagggcaatgatgatcaggatgactggagcacgcaggagattgaggcctgcctccaggacttcgataacatgacctgggagatcgagtgcacttcagaaatgctgaagaagctgtctagtaaggtaatgaccaaggtcatcaagaagaaaatcatccttgccattcagcagctgggaaatggcgagtggacccagggcctgcagaagcgactgaagcacctgaaaggaagcatccagctcttcgaagctaagctggacaaaggagcccggatgctctgggagctcgccattgacttctcccctcgatgcagtgagaaccctgagaagatcattgccacggagcagaacacgtgtgcaatggagaaatcagggcggatctacacggaaatcatccggatttgggacatcgtcttagatcactgcaaactggctgattccatcaaggccatctgcaatgcctacaaccggggcttgtcctgtgtcctgcggaagaagctgaaaggtatcaataaaggccaagtgtcagctaacatgaaaattcaaaagcgtatacctcgctgctatgtggaggacacagaggccgagaagggcagggagcatgtcaatcctgagtactttcccccagccagtgcagtggagacagaatataacatcatgaagttccacagcttcagcaccaacatggcctttaacatcctcaatgacacgacagccacagtggagtaccccttccgggtgggtgagcttgagtacgcggtgatcgacctcaatcccaggccactggagcccatcatccttattgggcgaagtggcactgggaagacaacctgctgcttgtacagattgtggaagaaattccacgtttactgggaaaaagctgagcaggcaggaagcccattgctggccaaacaggtctggctgaagagaaggttggaagtggaacccggaaaagagagtccaggtggggaggaagaggaggaggaagaggacgaggaagaggaagattctattgaagtggaaacagtagaaagcatagatgagcaggagtatgaagcctgcgcaggaggagccggtgtggagccagcaggggacggccaagctgcagaagtatgtgcaccagaacatccccaccagctggagcatttacatcagatctttgtgaccaagaaccatgtgctgtgccaggaggtacaaaggaatttcattgagctttccaagtccaccaaggccactagtcattacaaaccactggaccccaacattcacaaactccaggacctgagggacgagaactttcctctgtttgtcacttccaagcagctgcttcttctgcttgatgcttctctgcccaaaccattttttctgagaaacgaagatggaagcttgaaaagaaccatcataggatggtctgcacaggaagagtcaaccattcctagttggcaagaggatgaagaggaggctgaggtggatggggactacagtgaggaggataaagctgtagaaatgcgtacgggtgacagtgacccccgggtgtacgtgacgtttgaggtgttcaaaaatgaaatatggcccaaaatgaccaaagggaggactgcctacaaccctgcactgatttggaaagaaataaaatcttttctaaagggttcttttgaggccctcagctgtccccatgggagactcactgaagaagtatataagaaattagggaggaaacggtgccccaatttcaaggaagaccggagtgagatctacagcctcttcagtctgtatcagcaaatcaggtcccagaaaggttattttgatgaagaggatgttctgtacaacatatcccggaggctgtcgaagctcagggtgctcccatggtccatccacgagctctatggtgatgagattcaagactttacccaggccgagctggcgctgctgatgaaatgcatcaatgaccccaactctatgttcctcacgggggacacggcccagagcatcatgaagggcgtggccttccgcttcagcgatctgcgctctctgttccattatgccagcagaaacaccatagacaagcagtgtgctgtccggaagcccaagaagatccaccagctgtaccagaattacaggtcccactcaggaatcctcaatctggcatctggagtggtggatttacttcagttctatttcccagaatcttttgatcgccttccaagggattctggcctctttgatggtcctaagccaactgttctggagtcttgtagtgtaagcgacttggcaattttgctacgagggaataaaaggaaaactcagcccattgaatttggagcccaccaggtaatccttgtggccaatgaaacggcaaaggagaaaattccagaagagctggggttagcacttgtgctaacaatttatgaagcaaaaggcttagaatttgatgatgtcctcctttacaacttttttactgattctgaggcttataaggaatggaagatcatttcctcattcacacctacctcaactgactccagagaggaaaaccggccattggttgaagtacccctggacaaaccaggctcttctcagggtcgatctctcatggtgaatccagaaatgtacaagctcctcaacggagagctgaagcagctgtacaccgccatcacacgggctcgggtcaacctctggatctttgatgaaaaccgagagaaacgggctcccgcattcaaatatttcattagaagagattttgtccaagttgtaaagacagatgaaaataaagactttgatgatagcatgttcgttaagacctcaactcctgcggagtggattgcacagggagattactacgccaagcaccagtgctggaagCTTCCTAATGAAGATCCTGAGATTTTTGATGTTTCATCCAAGTGCCTGTCTATACTGGTTCAGCTGTATGGAGGGGAAAACCCGGACAGCCTCTCTCCTGAAAATGTGGAAATTTTTGCTCATTTACTGACATCCAAGGAGGACCCAAAGGAGCAGAAGCTTCTGTTAAGGATTCTCAGAAGAATGATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGGTTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAG MWDPRAARMDLTAYAELLKESGNQVLKNGNFSLAIRKYDEAIQILLQLYQWGVPPRDLAVLLCNKSNAFFSLGKWNEAFVAAKECLQWDPTYVKGYYRAGYSLLRLHQPYEAARMFFEGLRLVQRSQDQAPVADFLVGVFTTMSSDSIVLQSFLPCFDHIFTTGFPTEVWQSVIEKLAKKGLWHSFLLLSAKKDRLPRNIHVPELSLKSLFEKYVFIGLYEKMEQVPKLVQWLISIGASVETIGPYPLHALMRLCIQARENHLFRWLMDHKPEWKGRINQKDGDGCTVLHVVAAHSPGYLVKRQTEDVQMLLRFGADPTLLDRQSRSVVDVLKRNKNFKAIEKINSHLEKLATCSKDLSGFSNGDGPTSENDIFRKVLEQLVKYMNSGNRLLHKNFLKQEVVQRFLRLLSTLQEIPPDLVCDINQDCATTVFKFLLEKQRWPEVLLLLTRKVSGEPPLGDCLIKDCNFSDLDICTIIPHLSTWDQRKKQLLGCLIDSGALPDGLQESQERPVVTCLKHEDFELAFLLLTKGADPRAISLTEGDTPLHAALHIFLEIKADIGFSFLSHLLDLFWSNPTEFDYLNPNVQDSNGNTLMHILFQKGMLKRVKKLLDLLVKFDINFNLKNKEGKDARHRIKKNDSLLLAWNKALMENRRRSRQDSAAHLGKLSKSTAPGHTSQLKSQGSFKSVPCGATARTLPEGSAVPDSWETLPGTQVTRKEPGALRPCSLRDCLMQDITVLIQQVEVDPSFPEDCLQSSEPLEAGAGKEGKKDDKPTLGAGAPDCSEVGEGHAQVGLGALQLVPDDNRGKEGNDDQDDWSTQEIEACLQDFDNMTWEIECTSEMLKKLSSKVMTKVIKKKIILAIQQLGNGEWTQGLQKRLKHLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIIATEQNTCAMEKSGRIYTEIIRIWDIVLDHCKLADSIKAICNAYNRGLSCVLRKKLKGINKGQVSANMKIQKRIPRCYVEDTEAEKGREHVNPEYFPPASAVETEYNIMKFHSFSTNMAFNILNDTTATVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAEQAGSPLLAKQVWLKRRLEVEPGKESPGGEEEEEEEDEEEEDSIEVETVESIDEQEYEACAGGAGVEPAGDGQAAEVCAPEHPHQLEHLHQIFVTKNHVLCQEVQRNFIELSKSTKATSHYKPLDPNIHKLQDLRDENFPLFVTSKQLLLLLDASLPKPFFLRNEDGSLKRTIIGWSAQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGRTAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLYQQIRSQKGYFDEEDVLYNISRRLSKLRVLPWSIHELYGDEIQDFTQAELALLMKCINDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRKPKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLPRDSGLFDGPKPTVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANETAKEKIPEELGLALVLTIYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPTSTDSREENRPLVEVPLDKPGSSQGRSLMVNPEMYKLLNGELKQLYTAITRARVNLWIFDENREKRAPAFKYFIRRDFVQVVKTDENKDFDDSMFVKTSTPAEWIAQGDYYAKHQCWKLPNEDPEIFDVSSKCLSILVQLYGGENPDSLSPENVEIFAHLLTSKEDPKEQKLLLRILRRMITSNEKHLESLKNAGSLLRALERLAPGSGSFADSAVAPLALEILQAVGH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29947 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 880 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11038603:- chrX:10865697-11129340:- chrX:11056723:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 31 6 5.36 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29948 HCCS-DT::ACE2-DT ENSG00000234129.10::ENSG00000225833.1 NCIH2081 SRR8615601 SRR8652055 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 879 TRUE 1521 TRUE 600 HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:10944205:- chrX:10865697-11129340:- chrX:10962325:- ACE2-DT ENSG00000225833.1 lncRNA + + chrX:15602881-15621484:+ chrX:15621012:+ chrX:15621004-15639607:+ chrX:15639135:+ chrX:10913204,chrX:10913193,chrX:10913179,chrX:10913216 chrX:15617901,chrX:15617901,chrX:15617901,chrX:15617901 NA NA chrX:10931324,chrX:10931313,chrX:10931299,chrX:10931336 chrX:15636024,chrX:15636024,chrX:15636024,chrX:15636024 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 31 6 5.36 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.7968 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29956 CAP1::HPCAL4 ENSG00000131236.18::ENSG00000116983.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40067717:+ chr1:40505905-40538321:+ chr1:40533389:+ HPCAL4 ENSG00000116983.13 protein_coding - - chr1:39678648-39691485:- chr1:39684611:- chr1:40144320-40157157:- chr1:40150283:- chr1:40069295,chr1:40069295,chr1:40069295 chr1:39690605,chr1:39690604,chr1:39690614 NA NA chr1:40534967,chr1:40534967,chr1:40534967 chr1:40156277,chr1:40156276,chr1:40156286 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.35Mb] 177 85 177 85 ONLY_REF_SPLICE YES_LDAS 3.268 GT 1.9219 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29958 TRIT1::ENSG00000227278 ENSG00000043514.17::ENSG00000227278.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1572 TRUE 618 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857246:- chr1:40303782-40349183:- chr1:40322918:- ENSG00000227278 ENSG00000227278.1 lncRNA - - chr1:40514461-40515057:- chr1:40514634:- chr1:40980133-40980729:- chr1:40980306:- chr1:39856445,chr1:39856263,chr1:39856447 chr1:40515349,chr1:40515345,chr1:40515348 NA NA chr1:40322117,chr1:40321935,chr1:40322119 chr1:40981021,chr1:40981017,chr1:40981020 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 84 48 84 22.23 INCL_NON_REF_SPLICE YES_LDAS 1.3251 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29960 ZFP69::ENSG00000284719 ENSG00000187815.10::ENSG00000284719.3 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ZFP69 ENSG00000187815.10 protein_coding + + chr1:40477290-40496343:+ chr1:40479488:+ chr1:40942962-40962015:+ chr1:40945160:+ ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39808002:+ chr1:40265091-40275122:+ chr1:40273674:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 46 21 46 21 ONLY_REF_SPLICE YES_LDAS 0.8357 GT 1.5656 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29961 EXO5-DT::SMAP2 ENSG00000238287.1::ENSG00000084070.12 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 906 FALSE NA FALSE NA EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40508589:- chr1:40958829-40974333:- chr1:40974261:- SMAP2 ENSG00000084070.12 protein_coding + + chr1:40344850-40423326:+ chr1:40413016:+ chr1:40810522-40888998:+ chr1:40878688:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 40 2 40 2 ONLY_REF_SPLICE YES_LDAS 0.5238 GT 1.8892 AG 1.3753 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29962 COL9A2::TRIT1 ENSG00000049089.15::ENSG00000043514.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40311662:- chr1:40766161-40783485:- chr1:40777334:- TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39848097:- chr1:40303782-40349183:- chr1:40313769:- chr1:40311573,chr1:40311575 chr1:39849719,chr1:39849718 NA NA chr1:40777245,chr1:40777247 chr1:40315391,chr1:40315390 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Collagen|26-81|2.1e-14^Collagen|60-115|7.4e-13^Collagen|116-162|5e-11^Collagen|179-235|4.2e-13^Collagen|221-275|2e-09^Collagen|310-317|1^Collagen|376-418|9.7e-07^Collagen|406-464|4.6e-11^Collagen-PARTIAL|460-471~|1.7e-13 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.42Mb] 34 18 34 18 ONLY_REF_SPLICE YES_LDAS 0.6486 GT 1.8295 AG 1.9656 ENST00000372748.8 1-471 ENST00000469476.2 508-513 chr1|-|[2]40311662-40311715[0]|[2]40312059-40312112[0]|[2]40312456-40312479[0]|[2]40312574-40312609[0]|[2]40312731-40312784[0]|[2]40314205-40314267[0]|[2]40314352-40314387[0]|[2]40315590-40315664[0]|[2]40317123-40317197[0]<==>chr1|-|[2]39848092-39848097[0] atggccgccgctacggcctccccccgcagcctccttgttctcctccaggtggtagtgctcgctctggcgcagattagaggtccaccgggagagcggggccccccgggtcccccgggaccgccgggagtgcctggatccgacggcatcgacggtgacaatgggccccctggaaaagctggccctccgggacccaagggcgagcctggcaaagctgggccagatgggccagacgggaagcccgggattgatggtttaactggagccaagggggagcctggccccatggggatccctggagtcaagggccagcccgggcttcctggtcctcctggccttccgggccctggttttgctggacctcctgggcctcctggacctgttggcctccctggtgagattggaatccgaggccccaagggggaccctggaccagatggaccatcggggcccccaggaccccctgggaaacctTTCTAG MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29963 PTPN4::CFAP221 ENSG00000088179.9::ENSG00000163075.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 902 TRUE 1574 TRUE 620 PTPN4 ENSG00000088179.9 protein_coding + + chr2:119759922-119984899:+ chr2:119862643:+ chr2:120517498-120742475:+ chr2:120620219:+ CFAP221 ENSG00000163075.13 protein_coding + + chr2:119544432-119662251:+ chr2:119646958:+ chr2:120302008-120419827:+ chr2:120404534:+ chr2:119876710,chr2:119876711 chr2:119641318,chr2:119641316 NA NA chr2:120634286,chr2:120634287 chr2:120398894,chr2:120398892 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Spectrin_4|8-59|2.3e-05^SNX17-27-31_F1_FERM|31-80|4.6e-06^FERM_N|33-97|3.5e-26^FERM_M|52-71|2.8^FERM_M|120-161|1.1e-13 none ["TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.10Mb];LOCAL_REARRANGEMENT:+:[97380] 33 34 33 25.75 ONLY_REF_SPLICE YES_LDAS 0.7328 GT 1.7056 AG 1.9086 ENST00000488279.6 1-246 ENST00000413369.8 2226-2523 chr2|+|[0]119809854-119809991[2]|[0]119862536-119862643[2]<==>chr2|+|[2]119646958-119647050[1]|[2]119651974-119652069[1]|[2]119656362-119656470[2] atgacctcacgtttccgattgcctgctggcagaacctacaatgtacgagcatcagagttggcccgagacagacagcatactgaagtggtttgcaacatccttcttctggataacactgtacaagctttcaaagtcaataaacatgatcaggggcaagtcttgttggatgtcgtcttcaagcatctagatttgactgagcaggactattttggtttacagttggctgatgattccacagataacccaCTGCGATTCCTTCAATTCATTTATGCTTCCGATAGACGTCCCTGCCATCCTTGATGCCTTACCAGAAGAGGACAGACTAGAAACAGTAGAACGTGAGCTCTGTGAGCAGAATGTAGAAGTTATGTTGACTCCAGAAATGATCAAAGTGGAATTCCCTATGTTGAACTACAAGGACATCAGGAAGGAGAAAGAAGTGAAAGATCAAGCACAACCAGCAGAGAAGGCCGGAGAGAAGCTGCTCGAGGAGATGAGGAACCTGCGGGGCAAAGCACTCAACACATACCTGATTCTAGAATGA MTSRFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYFGLQLADDSTDNPLRFLQFIYASDRRPCHP*CLTRRGQTRNSRT*AL*AECRSYVDSRNDQSGIPYVELQGHQEGERSERSSTTSREGRREAARGDEEPAGQSTQHIPDSRM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29964 TRIT1::ENSG00000227278 ENSG00000043514.17::ENSG00000227278.1 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1572 TRUE 618 TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857246:- chr1:40303782-40349183:- chr1:40322918:- ENSG00000227278 ENSG00000227278.1 lncRNA - - chr1:40514461-40515057:- chr1:40514866:- chr1:40980133-40980729:- chr1:40980538:- chr1:39856445,chr1:39856263,chr1:39856447 chr1:40515349,chr1:40515345,chr1:40515348 NA NA chr1:40322117,chr1:40321935,chr1:40322119 chr1:40981021,chr1:40981017,chr1:40981020 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 32 70 32 30.98 INCL_NON_REF_SPLICE YES_LDAS 0.7855 GT 1.8892 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29965 PTPN4::CFAP221 ENSG00000088179.9::ENSG00000163075.13 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 903 TRUE 1574 TRUE 620 PTPN4 ENSG00000088179.9 protein_coding + + chr2:119759922-119984899:+ chr2:119862643:+ chr2:120517498-120742475:+ chr2:120620219:+ CFAP221 ENSG00000163075.13 protein_coding + + chr2:119544432-119662251:+ chr2:119651974:+ chr2:120302008-120419827:+ chr2:120409550:+ chr2:119876710,chr2:119876711 chr2:119641318,chr2:119641316 NA NA chr2:120634286,chr2:120634287 chr2:120398894,chr2:120398892 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Spectrin_4|8-59|2.3e-05^SNX17-27-31_F1_FERM|31-80|4.6e-06^FERM_N|33-97|3.5e-26^FERM_M|52-71|2.8^FERM_M|120-161|1.1e-13 none ["TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.10Mb];LOCAL_REARRANGEMENT:+:[97380] 27 22 27 8.25 ONLY_REF_SPLICE YES_LDAS 0.4397 GT 1.7056 AG 1.9656 ENST00000488279.6 1-246 ENST00000413369.8 2319-2523 chr2|+|[0]119809854-119809991[2]|[0]119862536-119862643[2]<==>chr2|+|[2]119651974-119652069[1]|[2]119656362-119656470[2] atgacctcacgtttccgattgcctgctggcagaacctacaatgtacgagcatcagagttggcccgagacagacagcatactgaagtggtttgcaacatccttcttctggataacactgtacaagctttcaaagtcaataaacatgatcaggggcaagtcttgttggatgtcgtcttcaagcatctagatttgactgagcaggactattttggtttacagttggctgatgattccacagataacccaTGAGCTCTGTGAGCAGAATGTAGAAGTTATGTTGACTCCAGAAATGATCAAAGTGGAATTCCCTATGTTGAACTACAAGGACATCAGGAAGGAGAAAGAAGTGAAAGATCAAGCACAACCAGCAGAGAAGGCCGGAGAGAAGCTGCTCGAGGAGATGAGGAACCTGCGGGGCAAAGCACTCAACACATACCTGATTCTAGAATGA MTSRFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYFGLQLADDSTDNP*AL*AECRSYVDSRNDQSGIPYVELQGHQEGERSERSSTTSREGRREAARGDEEPAGQSTQHIPDSRM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29968 CCDC102B::LINC02864 ENSG00000150636.17::ENSG00000263711.6 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA CCDC102B ENSG00000150636.17 protein_coding + + chr18:68715209-69055189:+ chr18:68846421:+ chr18:66382446-66722426:+ chr18:66513658:+ LINC02864 ENSG00000263711.6 lncRNA - - chr18:73151241-73264480:- chr18:73200789:- chr18:70818476-70931715:- chr18:70868024:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 5 19 5 ONLY_REF_SPLICE YES_LDAS 0.2994 GT 1.3383 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29972 EXO5-DT::PPT1 ENSG00000238287.1::ENSG00000131238.18 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 912 FALSE NA FALSE NA EXO5-DT ENSG00000238287.1 lncRNA - - chr1:40493157-40508661:- chr1:40508589:- chr1:40958829-40974333:- chr1:40974261:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40092507:- chr1:40538382-40562932:- chr1:40558179:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 0 14 0 ONLY_REF_SPLICE YES_LDAS 0.1746 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29976 ENSG00000284719::PPIE ENSG00000284719.3::ENSG00000084072.17 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 913 FALSE NA FALSE NA ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39805032:+ chr1:40265091-40275122:+ chr1:40270704:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39752910:+ chr1:40157854-40229586:+ chr1:40218582:+ chr1:39806762,chr1:39806763 chr1:39750474,chr1:39750472 NA NA chr1:40272434,chr1:40272435 chr1:40216146,chr1:40216144 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 13 3 13 3 ONLY_REF_SPLICE YES_LDAS 0.1996 GT 1.5329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29984 NT5C1A::RIMS3 ENSG00000116981.4::ENSG00000117016.10 NCIH1963 SRR8615602 SRR8652047 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NT5C1A ENSG00000116981.4 protein_coding - - chr1:39651229-39672107:- chr1:39671904:- chr1:40116901-40137779:- chr1:40137576:- RIMS3 ENSG00000117016.10 protein_coding - - chr1:40620680-40665682:- chr1:40647842:- chr1:41086352-41131354:- chr1:41113514:- chr1:39666287,chr1:39666289,chr1:39666293,chr1:39666291,chr1:39666296,chr1:39666294 chr1:40656903,chr1:40656904,chr1:40656905,chr1:40656904,chr1:40656904,chr1:40656904 NA NA chr1:40131959,chr1:40131961,chr1:40131965,chr1:40131963,chr1:40131968,chr1:40131966 chr1:41122575,chr1:41122576,chr1:41122577,chr1:41122576,chr1:41122576,chr1:41122576 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.95Mb] 6 8 6 7.85 ONLY_REF_SPLICE NO_LDAS 0.1727 GT 1.6402 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29989 SH3BP4::SMPD4BP ENSG00000130147.16::ENSG00000152117.18 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 918 FALSE NA FALSE NA SH3BP4 ENSG00000130147.16 protein_coding + + chr2:234952017-235055714:+ chr2:234952170:+ chr2:235860661-235964358:+ chr2:235860814:+ SMPD4BP ENSG00000152117.18 transcribed_processed_pseudogene + + chr2:131492813-131521573:+ chr2:131520097:+ chr2:132250386-132279146:+ chr2:132277670:+ chr2:234966281,chr2:234966282 chr2:131519588,chr2:131519586 NA NA chr2:235874925,chr2:235874926 chr2:132277161,chr2:132277159 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 312 71 310.73 70.51 ONLY_REF_SPLICE YES_LDAS 3.9386 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29990 CREBBP::SLX4 ENSG00000005339.15::ENSG00000188827.12 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 919 FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3850297:- chr16:3775055-3930714:- chr16:3900298:- SLX4 ENSG00000188827.12 protein_coding - - chr16:3581181-3611606:- chr16:3596393:- chr16:3631182-3661607:- chr16:3646394:- chr16:3833718,chr16:3833722 chr16:3596505,chr16:3596506 NA NA chr16:3883719,chr16:3883723 chr16:3646506,chr16:3646507 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Creb_binding|106-159|10^Creb_binding|322-340|9.7^zf-TAZ|354-405|1.6e-12^Creb_binding|443-482|0.096^KIX|550-629|4.6e-42^KIX_2|552-632|5.9e-10^Creb_binding|743-743|10 Slx4|1754-1810|1.8e-19 ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.11Mb] 90 100 90 100 ONLY_REF_SPLICE YES_LDAS 1.9629 GT 1.7465 AG 1.9219 ENST00000382070.7 1-798 ENST00000294008.4 1684-5505 chr16|-|[2]3850297-3851009[1]|[0]3879832-3879916[0]<==>chr16|-|[2]3582342-3582693[2]|[1]3583097-3583510[2]|[1]3584769-3584871[1]|[0]3589002-3591310[2]|[1]3592699-3592865[0]|[2]3594453-3594599[0]|[2]3595605-3595693[1]|[0]3596153-3596393[0] atggctgagaacttgctggacggaccgcccaaccccaaaagagccaaactcagctcgcccggtttctcggcgaatgacagcacagattttggatcattgtttgacttggaaaatgatcttcctgatgagctgatacccaatggaggagaattaggccttttaaacagtgggaaccttgttccagatgctgcttccaaacataaacaactgtcggagcttctacgaggaggcagcggctctagtatcaacccaggaataggaaatgtgagcgccagcagccccgtgcagcagggcctgggtggccaggctcaagggcagccgaacagtgctaacatggccagcctcagtgccatgggcaagagccctctgagccagggagattcttcagcccccagcctgcctaaacaggcagccagcacctctgggcccacccccgctgcctcccaagcactgaatccgcaagcacaaaagcaagtggggctggcgactagcagccctgccacgtcacagactggacctggtatctgcatgaatgctaactttaaccagacccacccaggcctcctcaatagtaactctggccatagcttaattaatcaggcttcacaagggcaggcgcaagtcatgaatggatctcttggggctgctggcagaggaaggggagctggaatgccgtaccctactccagccatgcagggcgcctcgagcagcgtgctggctgagaccctaacgcaggtttccccgcaaatgactggtcacgcgggactgaacaccgcacaggcaggaggcatggccaagGGCCTTATGCAGGAGCCCGTGCCGCCTCTGGTGCCACCTGAGCACTCAGAGCTGAGCGAGCGAAGGTCACCCGCTCTCCACGGCACCCCCACTGCAGGCTGTGGCTCCAGGGGCCCGTCGCCTTCGGCCAGCCAGAGGGAGCACCAGGCCCTGCAGGACCTCGTGGACCTGGCGAGGGAGGGACTGAGCGCCAGCCCGTGGCCCGGCAGTGGGGGCCTGGCTGGCTCGGAAGGGACTGCAGGGTTGGACGTGGTGCCCGGCGGCCTTCCTCTGACTGGGTTTGTGGTGCCATCGCAGGACAAGCACCCGGACAGGGGCGGCCGCACCTTGCTCTCCCTCGGGCTGCTGGTTGCTGACTTTGGCGCCATGGTCAATAACCCACACCTGAGTGATGTCCAGTTTCAGACGGACAGCGGGGAGGTGCTTTACGCCCACAAGTTCGTGCTTTATGCCCGATGCCCGCTCCTCATCCAGTATGTGAACAATGAAGGCTTCTCCGCTGTAGAGGACGGGGTTCTGACCCAGCGTGTCCTGCTGGGTGACGTGAGCACCGAGGCCGCCCGCACGTTCCTGCACTATCTCTACACTGCGGACACTGGCCTTCCTCCTGGCCTTAGCTCTGAGCTGAGCTCCCTGGCCCACAGGTTTGGCGTGAGTGAGCTCGTTCACCTGTGCGAACAGGTGCCTATTGCCACTGACTCAGAGGGCAAACCATGGGAGGAGAAGGAAGCAGAGAATTGCGAAAGCAGGGCCGAGAATTTCCAGGAACTCTTGAGGTCAATGTGGGCAGATGAAGAGGAGGAAGCGGAGACTTTGTTGAAATCCAAGGACCACGAAGAAGATCAAGAAAACGTGAATGAAGCAGAAATGGAAGAAATTTATGAATTTGCAGCTACTCAGCGAAAGCTTCTCCAGGAAGAAAGGGCAGCGGGTGCCGGCGAGGACGCTGACTGGCTGGAGGGTGGCAGTCCGGTTTCTGGGCAACTCCTAGCAGGTGTCCAGGTGCAGAAACAGTGGGACAAGGTGGAGGAGATGGAGCCGTTGGAGCCAGGAAGAGATGAGGCCGCCACCACCTGGGAGAAGATGGGACAGTGCGCTCTCCCGCCACCCCAGGGCCAGCACTCAGGGGCACGGGGAGCAGAGGCCCCTGAGCAGGAGGCGCCAGAGGAGGCGCTTGGCCATTCCAGCTGCTCCAGCCCTTCCAGGGACTGCCAGGCAGAGAGAAAAGAAGGCTCTCTTCCGCACTCAGATGATGCCGGGGATTACGAACAGCTCTTCTCATCAACTCAGGGAGAGATCTCAGAGCCGTCCCAAATAACAAGTGAGCCCGAGGAACAAAGTGGCGCTGTCAGGGAAAGGGGGCTGGAGGTTTCTCATCGCCTGGCTCCCTGGCAGGCATCTCCACCGCACCCGTGCCGCTTCCTATTGGGGCCTCCCCAGGGCGGGAGTCCCCGCGGGTCTCATCACACAAGTGGGTCGTCCCTGTCAACACCCCGGTCCCGTGGCGGAACTTCCCAGGTGGGCTCCCCAACCTTGCTGTCTCCAGCTGTGCCATCAAAGCAGAAAAGGGACAGGAGCATCCTCACGCTGTCTAAAGAGCCAGGGCACCAGAAAGGCAAAGAGCGTCGGTCCGTGCTGGAGTGCAGAAATAAGGGGGTCCTGATGTTCCCAGAAAAATCTCCGTCTATTGACCTAACCCAGTCAAATCCTGACCATTCGAGCTCCAGATCTCAGAAATCTTCATCCAAACTGAACGAAGAAGATGAGGTCATCCTCTTACTGGACTCGGATGAGGAGCTGGAGCTAGAACAAACCAAAATGAAGTCCATTTCTAGTGATCCTCTGGAAGAAAAGAAAGCTCTAGAAATTAGCCCTAGGTCCTGTGAGCTGTTTTCCATCATTGATGTTGATGCAGATCAGGAACCTTCCCAGAGCCCACCAAGAAGCGAAGCTGTGCTGCAGCAGGAGGATGAGGGGGCGCTGCCGGAGAATCGGGGCTCTTTGGGCAGGAGAGGGGCTCCCTGGCTGTTCTGTGACCGTGAGAGCAGCCCCAGCGAGGCCAGCACCACAGACACCTCGTGGCTGGTGCCCGCCACCCCGCTGGCCAGCAGAAGCCGTGACTGTTCTTCCCAGACCCAAATCAGCAGCCTCAGGAGCGGGCTGGCCGTGCAGGCGGTGACTCAGCACACGCCCAGGGCCTCAGTAGGAAACAGGGAAGGGAACGAAGTCGCACAGAAGTTTTCTGTCATCAGGCCCCAGACACCACCGCCCCAGACACCGTCCTCATGCCTCACTCCCGTCTCTCCAGGAACTTCTGACGGCAGAAGGCAAGGCCACAGAAGCCCTTCCCGTCCCCACCCCGGGGGCCACCCGCACTCCTCTCCGCTGGCTCCACATCCCATCTCAGGGGACCGCGCCCACTTCAGCAGGCGGTTCCTGAAACACTCGCCGCCTGGGCCAAGCTTCCTGAACCAGACCCCAGCGGGTGAAGTGGTGGAAGTCGGAGACAGTGACGATGAGCAGGAGGTGGCCTCCCATCAGGCCAACAGAAGCCCCCCACTGGACAGTGACCCCCCAATTCCAATTGACGACTGCTGCTGGCACATGGAGCCCCTCTCGCCAATTCCCATTGACCACTGGAACCTGGAGCGGACCGGCCCCCTGAGCACCAGCAGCCCCAGCCGCAGGATGAACGAGGCCGCCGACAGCCGTGACTGTCGCTCCCCGGGACTCCTGGACACCACCCCCATCCGAGGAAGCTGCACTACCCAGAGGAAATTGCAAGAGAAGTCCTCGGGCGCGGGCTCCCTGGGGAATAGCAGGCCGAGCTTTCTGAATTCGGCTCTGTGGGACGTTTGGGACGGGGAAGAGCAGAGGCCTCCAGAGACCCCTCCTCCGGCCCAGATGCCAAGCGCTGGTGGAGCTCAGAAGCCCGAAGGGTTAGAGACACCCAAAGGTGCTAATCGGAAGAAGAACTTGCCCCCCAAAGTGCCCATAACGCCGATGCCACAGTATTCCATTATGGAGACGCCGGTGCTGAAGAAGGAACTGGATAGGTTTGGAGTCCGCCCTCTGCCTAAACGCCAGATGGTTCTGAAGCTGAAGGAGATATTCCAGTACACTCACCAGACCCTGGACTCAGACTCCGAGGACGAGAGCCAGTCCTCACAGCCGCTGTTGCAGGCGCCTCACTGCCAGACCCTCGCCTCCCAGACCTACAAGCCTTCAAGGGCAGGGGTCCATGCCCAGCAGGAGGCCACCACAGGACCTGGGGCCCATAGGCCCAAGGGACCTGCTAAGACCAAGGGCCCCCGACATCAAAGGAAGCATCATGAAAGCATCACACCCCCAAGCAGGTCGCCCACCAAGGAGGCACCTCCAGGCCTCAATGATGACGCCCAGATCCCAGCCTCTCAAGAATCCGTGGCCACCTCTGTGGATGGCAGTGACAGCTCCTTGAGCTCACAGAGTTCTTCCTCCTGTGAGTTTGGAGCGGCATTTGAGTCTGCAGGTGAAGAGGAGGGCGAGGGGGAGGTCAGTGCCTCGCAGGCAGCCGTGCAGGCGGCGGACACAGACGAGGCGCTGAGGTGCTACATCCGCTCCAAGCCGGCCCTGTACCAGAAGGTGCTGCTGTACCAGCCCTTTGAGCTGCGGGAGCTGCAGGCAGAGCTGAGGCAGAACGGCCTCCGTGTGTCCTCGCGCAGGCTGTTGGACTTCCTGGACACCCACTGTATCACCTTCACCACTGCCGCCACCCGCAGGGAGAAGCTCCAGGGCAGGAGGCGGCAGCCTCGGGGCAAGAAGAAGGTGGAGCGGAACTGA MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKGLMQEPVPPLVPPEHSELSERRSPALHGTPTAGCGSRGPSPSASQREHQALQDLVDLAREGLSASPWPGSGGLAGSEGTAGLDVVPGGLPLTGFVVPSQDKHPDRGGRTLLSLGLLVADFGAMVNNPHLSDVQFQTDSGEVLYAHKFVLYARCPLLIQYVNNEGFSAVEDGVLTQRVLLGDVSTEAARTFLHYLYTADTGLPPGLSSELSSLAHRFGVSELVHLCEQVPIATDSEGKPWEEKEAENCESRAENFQELLRSMWADEEEEAETLLKSKDHEEDQENVNEAEMEEIYEFAATQRKLLQEERAAGAGEDADWLEGGSPVSGQLLAGVQVQKQWDKVEEMEPLEPGRDEAATTWEKMGQCALPPPQGQHSGARGAEAPEQEAPEEALGHSSCSSPSRDCQAERKEGSLPHSDDAGDYEQLFSSTQGEISEPSQITSEPEEQSGAVRERGLEVSHRLAPWQASPPHPCRFLLGPPQGGSPRGSHHTSGSSLSTPRSRGGTSQVGSPTLLSPAVPSKQKRDRSILTLSKEPGHQKGKERRSVLECRNKGVLMFPEKSPSIDLTQSNPDHSSSRSQKSSSKLNEEDEVILLLDSDEELELEQTKMKSISSDPLEEKKALEISPRSCELFSIIDVDADQEPSQSPPRSEAVLQQEDEGALPENRGSLGRRGAPWLFCDRESSPSEASTTDTSWLVPATPLASRSRDCSSQTQISSLRSGLAVQAVTQHTPRASVGNREGNEVAQKFSVIRPQTPPPQTPSSCLTPVSPGTSDGRRQGHRSPSRPHPGGHPHSSPLAPHPISGDRAHFSRRFLKHSPPGPSFLNQTPAGEVVEVGDSDDEQEVASHQANRSPPLDSDPPIPIDDCCWHMEPLSPIPIDHWNLERTGPLSTSSPSRRMNEAADSRDCRSPGLLDTTPIRGSCTTQRKLQEKSSGAGSLGNSRPSFLNSALWDVWDGEEQRPPETPPPAQMPSAGGAQKPEGLETPKGANRKKNLPPKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLDSDSEDESQSSQPLLQAPHCQTLASQTYKPSRAGVHAQQEATTGPGAHRPKGPAKTKGPRHQRKHHESITPPSRSPTKEAPPGLNDDAQIPASQESVATSVDGSDSSLSSQSSSSCEFGAAFESAGEEEGEGEVSASQAAVQAADTDEALRCYIRSKPALYQKVLLYQPFELRELQAELRQNGLRVSSRRLLDFLDTHCITFTTAATRREKLQGRRRQPRGKKKVERN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oesophagus exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 29991 MSI2::TRIM37 ENSG00000153944.12::ENSG00000108395.14 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 921 TRUE 1600 TRUE 628 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59075714:- chr17:57059999-57184282:- chr17:57153075:- chr17:57262405,chr17:57262403 chr17:59078955,chr17:59078957 NA NA chr17:55339766,chr17:55339764 chr17:57156316,chr17:57156318 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_7|22-87|3.3e-07^RRM_1|24-91|1.1e-20^RRM_3|25-48|0.041^SET1_RBD|36-58|0.0009^DUF4651|36-48|0.0052^Nup35_RRM_2|38-74|0.0034^PHM7_cyt|50-89|0.019^CSD|59-71|0.083^NID|66-96|0.047^RRM_7|110-177|5.2e-07^PHM7_cyt|110-180|0.00015^RRM_1|112-178|3.7e-18^Nup35_RRM_2|112-162|0.00092^RRM_3|115-173|0.005^DUF4651|121-147|0.02^SET1_RBD|125-137|0.081^CSD|145-179|0.00055^NID|155-188|0.00047 MRFAP1|665-706|1.2^BORCS6|669-712|0.18^Baculo_PEP_C|674-711|0.32 ["MSI2:Oncogene"];["TRIM37:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.30Mb] 49 17 49 13.22 ONLY_REF_SPLICE YES_LDAS 0.6428 GT 1.5656 AG 1.9656 ENST00000284073.7 1-312 ENST00000262294.12 617-2895 chr17|+|[0]57256743-57256804[1]|[2]57257098-57257138[0]|[1]57257466-57257547[1]|[2]57258270-57258354[2]|[0]57262151-57262192[2]<==>chr17|-|[2]58999377-58999459[1]|[0]59001598-59001714[1]|[0]59012328-59012446[2]|[1]59015610-59015799[1]|[0]59017296-59017424[1]|[0]59028415-59028723[1]|[0]59031896-59032090[1]|[0]59041813-59041898[2]|[1]59047683-59047819[0]|[2]59049178-59049393[0]|[2]59051214-59051328[2]|[1]59056875-59057054[2]|[1]59061032-59061108[0]|[2]59062567-59062648[2]|[1]59064355-59064405[2]|[1]59070823-59070947[0]|[2]59075647-59075714[1] atggaggcaaatgggagccaaggcacctcgggcagcgccaacgactcccagcacgaccccggtaaaatgtttatcggtggactgagctggcagacctcaccagatagccttagagactattttagcaaatttggagaaattagagaatgtatggtcatgagagatcccactacgaaacgctccagaggcttcggtttcgtcacgttcgcagacccagcaagtgtagataaagtattaggtcagccccaccatgagttagattccaagacgattgaccccaaagttgcatttcctcgtcgagcgcaacccaagGTCAGAAGACATCTCTAACCCAAGAAACAGAGCTTTTGGAATCCTTACTTCAGGAGGTGGAGCACCAGTTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAGAGCTCAGAGATCCTTATGATGTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTTACCACTCCTGTTCCACCAGACTTTACCAGTGAATTAGTGCCATCTTACGATTCAGCTACTTTTGTTTTAGAGAATTTCAGCACTTTGCGTCAGAGAGCAGATCCTGTTTACAGTCCACCTCTTCAAGTTTCAGGACTTTGCTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTGCGAGGTTACTACTTATCTGTGTTTCTGGAGCTCTCAGCTGGCTTGCCTGAAACTTCTAAATATGAATATCGTGTAGAGATGGTTCACCAGTCCTGTAATGATCCTACAAAAAATATCATTCGAGAATTTGCATCTGACTTTGAAGTTGGAGAATGCTGGGGCTATAATAGATTTTTCCGTTTGGACTTACTCGCAAATGAAGGATACTTGAATCCACAAAATGATACAGTGATTTTAAGGTTTCAGGTACGTTCACCAACTTTCTTTCAAAAATCCCGGGACCAGCATTGGTACATTACTCAGTTGGAAGCTGCACAGACTAGTTATATCCAACAAATAAACAACCTTAAAGAGAGACTTACTATTGAGCTGTCTCGAACTCAGAAGTCAAGAGATTTGTCACCACCAGATAACCATCTTAGCCCCCAAAATGATGATGCTCTGGAGACACGAGCTAAGAAGTCTGCATGCTCTGACATGCTTCTCGAAGGTGGTCCTACTACAGCTTCTGTAAGAGAGGCCAAAGAGGATGAAGAAGATGAGGAGAAGATTCAGAATGAAGATTATCATCACGAGCTTTCAGATGGAGATCTGGATCTGGATCTTGTTTATGAGGATGAAGTAAATCAGCTCGATGGCAGCAGTTCCTCTGCTAGTTCCACAGCAACAAGTAATACAGAAGAAAATGATATTGATGAAGAAACTATGTCTGGAGAAAATGATGTGGAATATAACAACATGGAATTAGAAGAGGGAGAACTCATGGAAGATGCAGCTGCTGCAGGACCCGCAGGTAGTAGCCATGGTTATGTGGGTTCCAGTAGTAGAATATCAAGAAGAACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATTAATTTTAATACATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGCCCACCTGCTTCACTTCTGCAGCCCACAGCATCATATTCTCGAAAAGATAAAGACCAAAGGAAGCAACAGGCAATGTGGCGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACTCAAATGGCCGAAGTTCGATGTATGAAAACTGATGTAAAGAATACACTTTCAGAAATAAAAAGCAGCAGTGCTGCTTCTGGAGACATGCAGACAAGCCTTTTTTCTGCTGACCAGGCAGCTCTGGCTGCATGTGGAACTGAAAACTCTGGCAGATTGCAGGATTTGGGAATGGAACTCCTGGCAAAGTCATCAGTTGCCAATTGTTACATACGAAACTCCACAAATAAGAAGAGTAATTCGCCCAAGCCAGCTCGATCCAGTGTAGCAGGTAGTCTATCACTTCGAAGAGCAGTGGACCCTGGAGAAAATAGTCGTTCAAAGGGAGACTGTCAGACTCTGTCTGAAGGCTCCCCAGGAAGCTCTCAGTCTGGGAGCAGGCACAGTTCTCCCCGAGCCTTGATACATGGCAGTATCGGTGATATTCTGCCAAAAACTGAAGACCGGCAGTGTAAAGCTTTGGATTCAGATGCTGTTGTGGTTGCAGTTTTCAGTGGCTTGCCTGCGGTTGAGAAAAGGAGGAAAATGGTCACCTTGGGGGCTAATGCTAAAGGAGGTCATCTGGAAGGACTGCAGATGACTGATTTGGAAAATAATTCTGAAACTGGAGAGTTACAGCCTGTACTACCTGAAGGAGCTTCAGCTGCCCCTGAAGAAGGAATGAGTAGCGACAGTGACATTGAATGTGACACTGAGAATGAGGAGCAGGAAGAGCATACCAGTGTGGGCGGGTTTCACGACTCCTTCATGGTCATGACACAGCCCCCGGATGAAGATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAAAATAGTGGAAGGTAA MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKVRRHL*PKKQSFWNPYFRRWSTSCGLVVRVS*YLRAQRSL*CFSKFIGSPWHLLLPLLFHQTLPVN*CHLTIQLLLF*RISALCVREQILFTVHLFKFQDFAGG*KFTQMEMELCEVTTYLCFWSSQLACLKLLNMNIV*RWFTSPVMILQKISFENLHLTLKLENAGAIIDFSVWTYSQMKDT*IHKMIQ*F*GFRYVHQLSFKNPGTSIGTLLSWKLHRLVISNK*TTLKRDLLLSCLELRSQEICHHQITILAPKMMMLWRHELRSLHALTCFSKVVLLQLL*ERPKRMKKMRRRFRMKIIITSFQMEIWIWILFMRMK*ISSMAAVPLLVPQQQVIQKKMILMKKLCLEKMMWNITTWN*KRENSWKMQLLQDPQVVAMVMWVPVVEYQEEHIYAPLLPVVY*TLIH*F*YICWTLRTGAV*KICGAYSLAHLLHFCSPQHHILEKIKTKGSNRQCGECPLI*RC*KDSKLKWPKFDV*KLM*RIHFQK*KAAVLLLETCRQAFFLLTRQLWLHVELKTLADCRIWEWNSWQSHQLPIVTYETPQIRRVIRPSQLDPV*QVVYHFEEQWTLEKIVVQRETVRLCLKAPQEALSLGAGTVLPEP*YMAVSVIFCQKLKTGSVKLWIQMLLWLQFSVACLRLRKGGKWSPWGLMLKEVIWKDCR*LIWKIILKLESYSLYYLKELQLPLKKE*VATVTLNVTLRMRSRKSIPVWAGFTTPSWS*HSPRMKIHIPVFLMVNK*ALKISASIQMKIVEG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 29992 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 920 FALSE NA FALSE NA WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:754324:+ chr12:861745-1020618:+ chr12:863490:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1236769:+ chr12:1099675-1605099:+ chr12:1345935:+ chr12:780124,chr12:780121 chr12:1216383,chr12:1216377 NA NA chr12:889290,chr12:889287 chr12:1325549,chr12:1325543 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PK_Tyr_Ser-Thr|222-475|3.6e-45^Pkinase|226-479|1.9e-58^OSR1_C|500-563|1.2e-29 none ["ERC1:Oncogene"];["Klijn_CellLines","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[79057] 46 22 46 22 ONLY_REF_SPLICE YES_LDAS 0.7025 GT 1.8892 AG 1.7465 ENST00000530271.6 1-759 ENST00000543086.7 2268-3267 chr12|+|[0]753566-754324[2]<==>chr12|+|[2]1236769-1236904[2]|[0]1263034-1263165[2]|[0]1289852-1290012[1]|[2]1371833-1371977[2]|[0]1408149-1408247[2]|[0]1444562-1444750[2]|[0]1490093-1490230[2] atgtctggcggcgccgcagagaagcagagcagcactcccggttccctgttcctctcgccgccggctcctgcccccaagaatggctccagctccgattcctccgtgggggagaaactgggagccgcggccgccgacgctgtgaccggcaggaccgaggagtacaggcgccgccgccacactatggacaaggacagccgtggggcggccgcgaccactaccaccactgagcaccgcttcttccgccggagcgtcatctgtgactccaatgccactgcactggagcttcccggccttcctctttccctgccccagcccagcatccccgcggctgtcccgcagagtgctccaccggagccccaccgggaagagaccgtgaccgccaccgccacttcccaggtagcccagcagcctccagccgctgccgcccctggggaacaggccgtcgcgggccctgccccctcgactgtccccagcagtaccagcaaagaccgcccagtgtcccagcctagccttgtggggagcaaagaggagccgccgccggcgagaagtggcagcggcggcggcagcgccaaggagccacaggaggaacggagccagcagcaggatgatatcgaagagctggagaccaaggccgtgggaatgtctaacgatggccgctttctcaagtttgacatcgaaatcggcagaggctcctttaagacggtctacaaaggtctggacactgaaaccaccgtggaagtcgcctggtgtgaactgcagGCAAGTGAAAGACCAGAATAAGAAGGTAGCAAATCTGAAGCACAAGGAACAGGTGGAAAAAAAGAAGAGTGCACAAATGTTAGAGGAGGCGCGACGACGGGAGGACAATCTCAACGACAGCTCTCAGCAGCTACAGGACAGTCTCCGTAAGAAGGATGACAGGATTGAAGAGCTGGAAGAAGCACTAAGAGAAAGTGTACAGATAACTGCAGAGCGGGAAATGGTGCTAGCACAAGAGGAATCAGCCAGGACCAATGCTGAAAAACAGGTGGAGGAGTTACTGATGGCCATGGAGAAGGTAAAGCAGGAACTAGAATCCATGAAAGCAAAGCTGTCCTCCACCCAGCAGTCTCTGGCAGAAAAGGAAACTCACTTGACTAATCTTCGGGCAGAGAGAAGGAAACACTTAGAGGAAGTTCTGGAGATGAAGCAAGAAGCTCTTCTGGCTGCCATTAGTGAAAAAGACGCCAATATAGCTCTCTTGGAGCTTTCGTCCTCTAAGAAGAAGACCCAAGAGGAAGTGGCTGCCCTGAAGCGGGAGAAGGATCGTCTGGTACAGCAGCTTAAGCAGCAGACGCAAAATCGAATGAAGCTAATGGCCGACAACTACGAGGATGACCACTTCAAATCCTCCCATTCCAATCAAACAAATCACAAGCCCTCCCCAGACCAGATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAGCTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCCTGGAAGAGTCCTCTTGA MSGGAAEKQSSTPGSLFLSPPAPAPKNGSSSDSSVGEKLGAAAADAVTGRTEEYRRRRHTMDKDSRGAAATTTTTEHRFFRRSVICDSNATALELPGLPLSLPQPSIPAAVPQSAPPEPHREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVSQPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQASERPE*EGSKSEAQGTGGKKEECTNVRGGATTGGQSQRQLSAATGQSP*EG*QD*RAGRSTKRKCTDNCRAGNGASTRGISQDQC*KTGGGVTDGHGEGKAGTRIHESKAVLHPAVSGRKGNSLD*SSGREKETLRGSSGDEARSSSGCH**KRRQYSSLGAFVL*EEDPRGSGCPEAGEGSSGTAA*AADAKSNEANGRQLRG*PLQILPFQSNKSQALPRPDHPAPLRT*PK*K*IKVVHWTPDNPLP*PRPPDPPWTHSTSFL*LGR*PGGLGE*AAEDDPGAASG*VRER*TGQCRTAGVCQRHSSADSRPLSRHPRASGQRPGRVLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 29995 SLC22A23::ENSG00000228793 ENSG00000137266.15::ENSG00000228793.3 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1601 TRUE 629 SLC22A23 ENSG00000137266.15 protein_coding - - chr6:3268962-3457050:- chr6:3410188:- chr6:3269196-3457284:- chr6:3410422:- ENSG00000228793 ENSG00000228793.3 lncRNA - - chr6:3585101-3720081:- chr6:3589951:- chr6:3585335-3720315:- chr6:3590185:- chr6:3325342,chr6:3325346 chr6:3590341,chr6:3590342 NA NA chr6:3325576,chr6:3325580 chr6:3590575,chr6:3590576 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SLC22A23:Oncogene"] 20 23 20 22.25 ONLY_REF_SPLICE YES_LDAS 0.4365 GT 1.7968 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 29999 MSI2::TRIM37 ENSG00000153944.12::ENSG00000108395.14 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1600 TRUE 628 MSI2 ENSG00000153944.12 protein_coding + + chr17:57255851-57684689:+ chr17:57262192:+ chr17:55333212-55762050:+ chr17:55339553:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59076734:- chr17:57059999-57184282:- chr17:57154095:- chr17:57262405,chr17:57262403 chr17:59078955,chr17:59078957 NA NA chr17:55339766,chr17:55339764 chr17:57156316,chr17:57156318 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MSI2:Oncogene"];["TRIM37:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.30Mb] 12 19 12 5.78 INCL_NON_REF_SPLICE YES_LDAS 0.1837 GT 1.5656 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE musashi homolog 2 (Drosophila) 1 CML leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30001 SLC22A23::ENSG00000228793 ENSG00000137266.15::ENSG00000228793.3 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1601 TRUE 629 SLC22A23 ENSG00000137266.15 protein_coding - - chr6:3268962-3457050:- chr6:3410188:- chr6:3269196-3457284:- chr6:3410422:- ENSG00000228793 ENSG00000228793.3 lncRNA - - chr6:3585101-3720081:- chr6:3586030:- chr6:3585335-3720315:- chr6:3586264:- chr6:3325342,chr6:3325346 chr6:3590341,chr6:3590342 NA NA chr6:3325576,chr6:3325580 chr6:3590575,chr6:3590576 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SLC22A23:Oncogene"] 9 4 9 0.75 ONLY_REF_SPLICE YES_LDAS 0.1007 GT 1.7968 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30002 TANC2::EFCAB3 ENSG00000170921.16::ENSG00000172421.10 NCIH209 SRR8615604 SRR8652056 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63099357:+ chr17:61043596-61505064:+ chr17:61176718:+ EFCAB3 ENSG00000172421.10 protein_coding + + chr17:62343941-62416480:+ chr17:62350674:+ chr17:60421302-60493841:+ chr17:60428035:+ chr17:63144358,chr17:63144350,chr17:63144349 chr17:62348233,chr17:62348222,chr17:62348226 NA NA chr17:61221719,chr17:61221711,chr17:61221710 chr17:60425594,chr17:60425583,chr17:60425587 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.59Mb] 9 10 9 9.12 ONLY_REF_SPLICE YES_LDAS 0.1872 GT 1.8062 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 61278318 FALSE 60451175 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30010 DDX52::AATF ENSG00000278053.5::ENSG00000275700.6 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 924 FALSE NA FALSE NA DDX52 ENSG00000278053.5 protein_coding - - chr17:37609739-37643446:- chr17:37642110:- chr17:35969787-36003475:- chr17:36002139:- AATF ENSG00000275700.6 protein_coding + + chr17:36948925-37056871:+ chr17:36950214:+ chr17:35306225-35414171:+ chr17:35307514:+ chr17:37640505,chr17:37640513 chr17:36950191,chr17:36950183 NA NA chr17:36000534,chr17:36000542 chr17:35307491,chr17:35307483 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BRD4_CDT|79-95|2.6e-05 AATF-Che1|162-162|0.91^AATF-Che1|220-373|1.1e-42^TRAUB|464-548|2.3e-29^AATF-Che1|491-504|1.7 ["AATF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.55Mb] 385 177 385 177 ONLY_REF_SPLICE YES_LDAS 5.7223 GT 1.9656 AG 1.8323 ENST00000620209.4 1-286 ENST00000619387.5 92-1683 chr17|-|[0]37642110-37642308[0]|[2]37643334-37643420[0]<==>chr17|+|[1]36950214-36950405[0]|[1]36952886-36953296[0]|[1]36953770-36953907[0]|[1]36986617-36986731[1]|[2]36988519-36988720[2]|[0]36989247-36989411[2]|[0]36990774-36990857[2]|[0]37019005-37019072[1]|[2]37020934-37021014[1]|[2]37031614-37031685[1]|[2]37056601-37056664[2] atggacgtccacgatctctttcgccggctcggcgcgggggccaaattcgacacgagacgcttctcggcagacgcagctcgattccagataggaaaaaggaaatatgactttgattcttcggaggtgcttcagggactggacttttttggaaacaagaagtctgtcccaggtgtgtgtggagcatcacaaacacatcagaagccccaaaatggagagaaaaaagaagagagcctaactgaaaggaagagggagcagagcaagaaaaaaaggaagacgatgacttcagCCACTGCTGCCAGGGTGATTGACAGGTTTGATGAAGGGGAAGATGGGGAAGGTGATTTCCTAGTAGTGGGTAGCATTAGAAAACTGGCATCAGCCTCCCTCTTGGACACGGACAAAAGGTATTGCGGCAAAACCACCTCTAGAAAAGCATGGAATGAAGACCATTGGGAGCAGACTCTGCCAGGATCGTCTGATGAGGAAATATCTGATGAGGAAGGGTCTGGAGATGAAGATTCAGAGGGACTGGGTCTGGAGGAATATGATGAGGACGACCTGGGTGCTGCTGAGGAACAGGAGTGTGGTGATCACAGGGAGAGCAAGAAGAGCAGAAGCCACTCTGCAAAAACACCGGGCTTCAGTGTCCAGAGTATCAGTGACTTTGAGAAATTTACCAAGGGAATGGATGACCTTGGGAGCAGTGAGGAGGAGGAAGACGAAGAGAGTGGCATGGAAGAAGGGGATGACGCGGAAGACTCCCAAGGCGAGAGTGAGGAAGACAGGGCTGGAGATAGAAACAGTGAGGATGATGGTGTGGTGATGACCTTCTCTAGTGTCAAAGTTTCTGAGGAAGTGGAGAAAGGAAGAGCCGTGAAGAACCAGATAGCACTGTGGGACCAGCTCTTGGAAGGAAGGATCAAACTACAAAAAGCTCTGTTGACCACCAACCAGCTTCCTCAACCAGATGTTTTCCCATTGTTCAAGGACAAAGGTGGCCCAGAATTTTCCAGTGCCCTGAAAAATAGTCACAAGGCACTTAAAGCATTGTTGAGGTCATTGGTAGGTCTTCAGGAAGAGTTGCTTTTCCAGTACCCAGACACTAGATATCTAGTAGATGGGACAAAGCCCAATGCGGGAAGTGAGGAGATTTCTAGTGAAGATGATGAGCTGGTAGAAGAGAAGAAGCAGCAACGAAGAAGGGTCCCTGCAAAGAGGAAGCTGGAGATGGAGGACTATCCCAGCTTCATGGCAAAGCGCTTTGCCGACTTTACAGTCTACAGGAACCGCACACTTCAGAAATGGCACGATAAGACCAAACTGGCTTCTGGAAAACTGGGGAAGGGTTTTGGTGCCTTTGAACGCTCAATCTTGACTCAGATCGACCATATTCTGATGGACAAAGAGAGATTACTTCGAAGGACACAGACCAAGCGCTCTGTCTATCGAGTTCTTGGCAAACCTGAGCCAGCAGCTCAGCCTGTCCCAGAGAGTTTGCCAGGGGAACCGGAGATCCTTCCTCAAGCCCCTGCTAATGCTCATCTGAAGGACTTGGATGAAGAAATCTTTGATGATGATGACTTTTACCACCAGCTCCTTCGAGAACTCATAGAACGGAAGACCAGCTCCTTGGATCCCAACGATCAGGTGGCCATGGGAAGGCAGTGGCTTGCAATCCAGAAGTTACGAAGCAAAATCCACAAAAAAGTAGATAGGAAAGCCAGCAAAGGCAGGAAACTTCGGTTTCATGTCCTTAGCAAGCTACTGAGTTTCATGGCACCTATTGACCATACTACAATGAATGATGATGCCAGGACAGAACTGTACCGCTCTCTTTTTGGCCAGCTCCACCCTCCCGACGAAGGCCACGGGGATTGA MDVHDLFRRLGAGAKFDTRRFSADAARFQIGKRKYDFDSSEVLQGLDFFGNKKSVPGVCGASQTHQKPQNGEKKEESLTERKREQSKKKRKTMTSATAARVIDRFDEGEDGEGDFLVVGSIRKLASASLLDTDKRYCGKTTSRKAWNEDHWEQTLPGSSDEEISDEEGSGDEDSEGLGLEEYDEDDLGAAEEQECGDHRESKKSRSHSAKTPGFSVQSISDFEKFTKGMDDLGSSEEEEDEESGMEEGDDAEDSQGESEEDRAGDRNSEDDGVVMTFSSVKVSEEVEKGRAVKNQIALWDQLLEGRIKLQKALLTTNQLPQPDVFPLFKDKGGPEFSSALKNSHKALKALLRSLVGLQEELLFQYPDTRYLVDGTKPNAGSEEISSEDDELVEEKKQQRRRVPAKRKLEMEDYPSFMAKRFADFTVYRNRTLQKWHDKTKLASGKLGKGFGAFERSILTQIDHILMDKERLLRRTQTKRSVYRVLGKPEPAAQPVPESLPGEPEILPQAPANAHLKDLDEEIFDDDDFYHQLLRELIERKTSSLDPNDQVAMGRQWLAIQKLRSKIHKKVDRKASKGRKLRFHVLSKLLSFMAPIDHTTMNDDARTELYRSLFGQLHPPDEGHGD* FALSE FALSE NA NA TRUE hsa-mir-2909 chr17:37033745-37033813:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30011 IL1RAPL2::NRK ENSG00000189108.14::ENSG00000123572.17 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 925 FALSE NA FALSE NA IL1RAPL2 ENSG00000189108.14 protein_coding + + chrX:104566199-105767829:+ chrX:105195748:+ chrX:103810880-105011822:+ chrX:104440430:+ NRK ENSG00000123572.17 protein_coding + + chrX:105822539-105958610:+ chrX:105924695:+ chrX:105066532-105202602:+ chrX:105168687:+ chrX:105204096,chrX:105204097 chrX:105924007,chrX:105924003 NA NA chrX:104448778,chrX:104448779 chrX:105167999,chrX:105167995 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ig_2|46-133|1.6e-08^ig|65-121|0.0001^I-set|73-133|1.2e-07^Ig_3|73-120|8.8e-06^Ig_6|74-144|2e-07^Izumo-Ig|91-132|0.064^V-set|96-122|0.00088^V-set_CD47|101-133|0.17^Sp38|103-134|0.062^Ig_2|151-231|5.5e-11^Ig_6|152-217|1.2e-05^I-set|172-231|7.6e-08^Ig_3|172-215|2.9e-07^Sp38|190-224|0.00035^Izumo-Ig|192-221|0.00032^ig|196-227|2.7e-06^V-set_CD47|197-231|0.00014^V-set|198-231|0.0001^I-set|246-346|1.1e-08^Ig_2|248-340|0.00042^Ig_3|249-335|4.3e-08^V-set|249-333|0.00023^ig|251-342|1.7e-07^Ig_6|314-344|0.26^Izumo-Ig|315-337|3^V-set_CD47|316-341|0.026 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.05Mb];NEIGHBORS[54714] 199 87 199 87 ONLY_REF_SPLICE YES_LDAS 2.9122 GT 1.8295 AG 1.8892 ENST00000372582.6 1-356 ENST00000243300.14 2976-4749 chrX|+|[0]104658914-104658995[0]|[1]105195475-105195748[1]<==>chrX|+|[2]105924695-105925031[2]|[0]105934258-105934444[0]|[1]105935170-105935325[0]|[1]105937439-105937582[0]|[1]105939874-105940032[0]|[1]105943941-105944041[2]|[0]105945872-105946015[2]|[0]105946315-105946464[2]|[0]105949575-105949734[0]|[1]105953034-105953173[2]|[0]105955505-105955600[2] atgaagccaccatttcttttggcccttgtggtctgttctgtagtcagcacaaatctgaagatggtgtcaaagagaaattctgtggatggctgcattgactggtcagtggatctcaagacatacatggctttggcaggtgaaccagtccgagtgaaatgtgcccttttctacagttatattcgtaccaactatagcacggcccagagcactgggctcaggcttatgtggtacaaaaacaaaggtgatttggaagagcccatcatcttttcagaggtcaggatgagcaaagaggaagattcaatatggtttcactcagctgaggcacaagacagtggattctacacttgtgttttaagGGCAAGCTATGGCAGAGATGGAAGCTGCAAGCAAGATGGTTATGATGGAAGTCGTGGAAAAGAGGAAGCCTACAGAGGCTATGGAAGCCATACAGCCAATAGAAGCCATGGAGGAAGTGCAGCCAGTGAGGACAATGCAGCCATTGGAGATCAGGAAGAACATGCAGCCAATATAGGCAGTGAAAGAAGAGGCAGTGAGGGTGATGGAGGTAAGGGAGTCGTTCGAACCAGTGAAGAGAGTGGAGCCCTTGGACTCAATGGAGAAGAAAATTGCTCAGAGACAGATGGTCCAGGATTGAAGAGACCTGCGTCTCAGGACTTTGAATATCTACAGGAGGAGCCAGGTGGTGGAAATGAGGCCTCAAATGCCATTGACTCAGGTGCTGCACCGTCAGCACCTGATCATGAGAGTGACAATAAGGACATATCAGAATCATCAACACAATCAGATTTTTCTGCCAATCACTCATCTCCTTCCAAAGGTTCTGGGATGTCTGCTGATGCTAACTTTGCCAGTGCCATCTTATACGCTGGATTCGTAGAAGTACCTGAGGAATCACCTAAGCAACCCTCTGAAGTCAATGTTAACCCACTCTATGTCTCTCCTGCATGTAAAAAACCACTAATCCACATGTATGAAAAGGAGTTCACTTCTGAGATCTGCTGTGGTTCTTTGTGGGGAGTCAATTTGCTGTTGGGAACCCGATCTAATCTATATCTGATGGACAGAAGTGGAAAGGCTGACATTACTAAACTTATAAGGCGAAGACCATTCCGCCAGATTCAAGTCTTAGAGCCACTCAATTTGCTGATTACCATCTCAGGTCATAAGAACAGACTTCGGGTGTATCATCTGACCTGGTTGAGGAACAAGATTTTGAATAATGATCCAGAAAGTAAAAGAAGGCAAGAAGAAATGCTGAAGACAGAGGAAGCCTGCAAAGCTATTGATAAGTTAACAGGCTGTGAACACTTCAGTGTCCTCCAACATGAAGAAACAACATATATTGCAATTGCTTTGAAATCATCAATTCACCTTTATGCATGGGCACCAAAGTCCTTTGATGAAAGCACTGCTATTAAAGTATGCATTGATCAATCAGCAGACTCTGAAGGAGACTACATGTCCTATCAAGCCTATATACGAATACTGGCAAAAATACAGGCAGCTGATCCAGTGAACCGGTTTAAGAGACCAGATGAGCTCCTTCATTTGCTGAAGCTCAAGGTATTTCCAACACTTGATCATAAGCCAGTGACAGTTGACCTGGCTATTGGTTCTGAAAAAAGACTAAAGATTTTCTTCAGCTCAGCAGATGGATATCACCTCATCGATGCAGAATCTGAGGTTATGTCTGATGTGACCCTGCCAAAGAATCCCCTGGAAATCATTATACCACAGAATATCATCATTTTACCTGATTGCTTGGGAATTGGCATGATGCTCACCTTCAATGCTGAAGCCCTCTCTGTGGAAGCAAATGAACAACTCTTCAAGAAGATCCTTGAAATGTGGAAAGACATACCATCTTCTATAGCTTTTGAATGTACACAGCGAACCACAGGATGGGGCCAAAAGGCCATTGAAGTGCGCTCTTTGCAATCCAGGGTTCTGGAAAGTGAGCTGAAGCGCAGGTCAATTAAGAAGCTGAGATTCCTGTGCACCCGGGGTGACAAGCTGTTCTTTACCTCTACCCTGCGCAATCACCACAGCCGGGTTTACTTCATGACACTTGGAAAACTTGAAGAGCTCCAAAGCAATTATGATGTCTAA MKPPFLLALVVCSVVSTNLKMVSKRNSVDGCIDWSVDLKTYMALAGEPVRVKCALFYSYIRTNYSTAQSTGLRLMWYKNKGDLEEPIIFSEVRMSKEEDSIWFHSAEAQDSGFYTCVLRASYGRDGSCKQDGYDGSRGKEEAYRGYGSHTANRSHGGSAASEDNAAIGDQEEHAANIGSERRGSEGDGGKGVVRTSEESGALGLNGEENCSETDGPGLKRPASQDFEYLQEEPGGGNEASNAIDSGAAPSAPDHESDNKDISESSTQSDFSANHSSPSKGSGMSADANFASAILYAGFVEVPEESPKQPSEVNVNPLYVSPACKKPLIHMYEKEFTSEICCGSLWGVNLLLGTRSNLYLMDRSGKADITKLIRRRPFRQIQVLEPLNLLITISGHKNRLRVYHLTWLRNKILNNDPESKRRQEEMLKTEEACKAIDKLTGCEHFSVLQHEETTYIAIALKSSIHLYAWAPKSFDESTAIKVCIDQSADSEGDYMSYQAYIRILAKIQAADPVNRFKRPDELLHLLKLKVFPTLDHKPVTVDLAIGSEKRLKIFFSSADGYHLIDAESEVMSDVTLPKNPLEIIIPQNIIILPDCLGIGMMLTFNAEALSVEANEQLFKKILEMWKDIPSSIAFECTQRTTGWGQKAIEVRSLQSRVLESELKRRSIKKLRFLCTRGDKLFFTSTLRNHHSRVYFMTLGKLEELQSNYDV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Nik-related protein kinase STE STE20 MSN Q7Z2Y5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30012 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 926 TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77236947:+ chr7:76751751-76958850:+ chr7:76866264:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PTPlike_phytase|36-71|1.5^Y_phosphatase-PARTIAL|58-99~|1.4e-87 none ["DEEPEST2019","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.21Mb] 144 35 144 32.26 ONLY_REF_SPLICE YES_LDAS 1.7947 GT 1.9086 AG 1.9329 ENST00000248594.11 1-99 ENST00000285871.5 157-2868 chr7|+|[0]77537547-77537645[2]<==>chr7|+|[0]77236947-77237029[1]|[2]77241691-77241900[1]|[2]77254506-77254563[2]|[0]77256333-77256509[2]|[0]77258995-77259068[1]|[2]77260009-77260236[1]|[2]77262121-77262307[2]|[0]77273694-77273789[2]|[0]77274482-77274652[2]|[0]77278752-77278840[1]|[2]77278937-77279101[1]|[2]77280429-77280653[1]|[2]77282557-77282785[2]|[0]77286798-77286926[2]|[0]77287440-77287577[2]|[0]77292952-77293200[2]|[0]77294663-77294866[2] atggagcaagtggagatcctgaggaaattcatccagagggtccaggccatgaagagtcctgaccacaatggggaggacaacttcgcccgggacttcatgTTACATGCTATGGGAAAACTTCCTGGAACCAGAATGGCAGCGTTAAAAGCCAAGTATACCTTGCTGCATGACGCCGTGATGAGCACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGGAGGTCTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATATAATGCAGTGAAGGAAAGAGAGTTCCATAATCAGTACAGATTAAATAGCTTAAAGGAAGAAAAAATCATCATAGTAAAAGAATTTGAGAAGATAACAAAGCCAGGAGAAATGGAGAAGAAGATGAAAATATTGAGAGAAAGCACTGAAGAATTACGTAAAGAAATAATGCAGAAGAAATTAGAAATTAAAAATTTACGAGAAGATTTGGCATCTAAACAAAAGCAATTATTAAAAGAGCAGAAGGAACTAGAAGAATTGTTGGGACATCAGGTCGTCCTAAAGGATGAAGTGGCCCACCATCAAACCATTCCAGTACAAATTGGAAAAGAGATAGAAAAAATAACACGCAAAAAAGTAGAAATGGAAAAGAAAAAAATTGTCTTGGAACAAGAAGTCAAAACGCTAAATGACTCCCTAAAGAAAGTTGAAAACAAGGTTAGTGCTATAGTGGATGAGAAGGAAAATGTAATAAAGGAAGTTGAAGGCAAACGAGCCTTACTTGAAATCAAAGAACGAGAACATAACCAATTGGTCAAGCTATTGGAATTAGCCAGAGAGAATGAAGCAACTTCATTAACTGAAAGAGGGATCTTGGATCTCAATTTACGCAACAGTCTCATTGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGAAATTTAAGAAAGATGGAACTGCTCTTGAAAGTGTCCTGGGATGCACTTAGGCAAACTCAAGCACTGCATCAAAGGCTTCTATTAGAGATGGAAGCTATCCCCAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAGCTTCACAAGGAAGTTGAAGTAGCTAAGAGGAATTTGGCCCAACAGAAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAGCAAAAATACACCAACATTGTTAAAGAAATGAAAGCAAAGGATCTTGAAATCAGGATACACAAGAAGAAAAAATGTGAAATTTATCGGAGACTGAGAGAGTTTGCTAAACTGTATGACACCATTCGAAATGAAAGAAACAAATTTGTTAACTTACTCCACAAAGCTCATCAGAAAGTAAATGAAATAAAAGAAAGGCATAAAATGTCATTAAATGAACTTGAAATTCTGAGAAATAGTGCCGTTAGTCAAGAAAGAAAGCTACAAAATTCCATGCTGAAACACGCCAACAATGTTACCATCAGAGAGAGCATGCAAAACGATGTGCGCAAAATTGTATCAAAACTTCAGGAAATGAAAGAAAAGAAGGAAGCCCAGTTAAATAACATTGACAGACTTGCCAACACGATCACAATGATCGAAGAGGAGATGGTGCAGCTTCGCAAAAGATACGAAAAAGCTGTTCAGCATCGAAATGAAAGTGGCGTTCAGCTGATAGAGCGGGAAGAAGAAATATGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAACTAAATGGAGAAATTGAAATACATCTACTGGAAGAAAAGATCCAATTCCTGAAAATGAAGATTGCTGAGAAGCAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAAGAGGTCCCTGGATGCCGACCTAGCTGTGCTCCAAATTCAGTTTTCACAGTGTACAGACAGAATTAAAGACCTGGAGAAACAGTTCGTAAAGCCTGATGGTGAGAATAGAGCTCGCTTCCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAAAATTAGACAAGCTGGAACTACAACTGGCCAAGAAGGAGGAGAAGCTGCTGGAGAAGGATTTCATCTATGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAACTCAGGGCTGCAAGCAGGACACACTGCTCTTAGCCAAGAAGATGAATGGCTATCAAAGAAGGATCAAAAATGCAACTGAGAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAAGTCAGGGAGAAAGAAGACTTCATCTTCACTTGCAATTCCAGGATAGAAAAAGGTCTGCCACTCAATAAGGAAATTGAGAAAGAATGGTTGAAAGTCCTTCGAGATGAAGAAATGCACGCCTTGGCCATCGCTGAAAAGTCTCAGGAGTTCTTGGAAGCAGATAATCGCCAGCTGCCCAATGGTGTTTACACAACTGCAGAGCAGCGTCCGAATGCCTACATCCCAGAAGCAGATGCCACTCTTCCTTTGCCAAAACCTTATGGTGCTTTGGCTCCTTTTAAACCCAGTGAACCTGGAGCCAATATGAGGCACATAAGGAAACCTGTTATAAAGCCAGTTGAAATCTGA MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFMLHAMGKLPGTRMAALKAKYTLLHDAVMSTQESEVQLLQNAKRFTEQIQQQQFHLQQADNFPEAFSTEVSKMREQLLKYQNEYNAVKEREFHNQYRLNSLKEEKIIIVKEFEKITKPGEMEKKMKILRESTEELRKEIMQKKLEIKNLREDLASKQKQLLKEQKELEELLGHQVVLKDEVAHHQTIPVQIGKEIEKITRKKVEMEKKKIVLEQEVKTLNDSLKKVENKVSAIVDEKENVIKEVEGKRALLEIKEREHNQLVKLLELARENEATSLTERGILDLNLRNSLIDKQNYHDELSRKQREKERDFRNLRKMELLLKVSWDALRQTQALHQRLLLEMEAIPKDDSTLSERRRELHKEVEVAKRNLAQQKIISEMESKLVEQQLAEENKLLKEQENMKELVVNLLRMTQIKIDEKEQKSKDFLKAQQKYTNIVKEMKAKDLEIRIHKKKKCEIYRRLREFAKLYDTIRNERNKFVNLLHKAHQKVNEIKERHKMSLNELEILRNSAVSQERKLQNSMLKHANNVTIRESMQNDVRKIVSKLQEMKEKKEAQLNNIDRLANTITMIEEEMVQLRKRYEKAVQHRNESGVQLIEREEEICIFYEKINIQEKMKLNGEIEIHLLEEKIQFLKMKIAEKQRQICVTQKLLPAKRSLDADLAVLQIQFSQCTDRIKDLEKQFVKPDGENRARFLPGKDLTEKEMIQKLDKLELQLAKKEEKLLEKDFIYEQVSRLTDRLCSKTQGCKQDTLLLAKKMNGYQRRIKNATEKMMALVAELSMKQALTIELQKEVREKEDFIFTCNSRIEKGLPLNKEIEKEWLKVLRDEEMHALAIAEKSQEFLEADNRQLPNGVYTTAEQRPNAYIPEADATLPLPKPYGALAPFKPSEPGANMRHIRKPVIKPVEI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30014 NUMA1::TTC28 ENSG00000137497.19::ENSG00000100154.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 929 FALSE NA FALSE NA NUMA1 ENSG00000137497.19 protein_coding - - chr11:72002864-72080693:- chr11:72069842:- chr11:71713910-71791739:- chr11:71780888:- TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28096408:- chr22:28374002-29075828:- chr22:28492396:- chr11:72049596,chr11:72049604 chr22:28097405,chr22:28097405 NA NA chr11:71760642,chr11:71760650 chr22:28493393,chr22:28493393 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NUMA1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr22] 69 33 69 33 ONLY_REF_SPLICE YES_LDAS 1.0386 GT 1.9086 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE TRUE hsa-mir-3165 chr11:72072228-72072302:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear mitotic apparatus protein 1 1 APL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30017 PTPN12::CCDC146 ENSG00000127947.16::ENSG00000135205.15 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 927 TRUE 1612 TRUE 632 PTPN12 ENSG00000127947.16 protein_coding + + chr7:77537295-77640069:+ chr7:77537645:+ chr7:77166612-77269386:+ chr7:77166962:+ CCDC146 ENSG00000135205.15 protein_coding + + chr7:77122434-77329533:+ chr7:77241691:+ chr7:76751751-76958850:+ chr7:76871008:+ chr7:77539540,chr7:77539538,chr7:77539535 chr7:77198753,chr7:77198750,chr7:77198750 NA NA chr7:77168857,chr7:77168855,chr7:77168852 chr7:76828070,chr7:76828067,chr7:76828067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PTPlike_phytase|36-71|1.5^Y_phosphatase-PARTIAL|58-99~|1.4e-87 none ["DEEPEST2019","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.21Mb] 27 19 27 2.74 ONLY_REF_SPLICE YES_LDAS 0.3028 GT 1.9086 AG 1.7465 ENST00000248594.11 1-99 ENST00000285871.5 240-2868 chr7|+|[0]77537547-77537645[2]<==>chr7|+|[2]77241691-77241900[1]|[2]77254506-77254563[2]|[0]77256333-77256509[2]|[0]77258995-77259068[1]|[2]77260009-77260236[1]|[2]77262121-77262307[2]|[0]77273694-77273789[2]|[0]77274482-77274652[2]|[0]77278752-77278840[1]|[2]77278937-77279101[1]|[2]77280429-77280653[1]|[2]77282557-77282785[2]|[0]77286798-77286926[2]|[0]77287440-77287577[2]|[0]77292952-77293200[2]|[0]77294663-77294866[2] atggagcaagtggagatcctgaggaaattcatccagagggtccaggccatgaagagtcctgaccacaatggggaggacaacttcgcccgggacttcatgCACACAAGAGTCAGAGGTCCAACTGCTACAGAATGCCAAACGTTTCACTGAGCAAATACAACAGCAGCAGTTTCACCTGCAGCAAGCTGATAATTTTCCAGAAGCATTCTCCACGGAGGTCTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATATAATGCAGTGAAGGAAAGAGAGTTCCATAATCAGTACAGATTAAATAGCTTAAAGGAAGAAAAAATCATCATAGTAAAAGAATTTGAGAAGATAACAAAGCCAGGAGAAATGGAGAAGAAGATGAAAATATTGAGAGAAAGCACTGAAGAATTACGTAAAGAAATAATGCAGAAGAAATTAGAAATTAAAAATTTACGAGAAGATTTGGCATCTAAACAAAAGCAATTATTAAAAGAGCAGAAGGAACTAGAAGAATTGTTGGGACATCAGGTCGTCCTAAAGGATGAAGTGGCCCACCATCAAACCATTCCAGTACAAATTGGAAAAGAGATAGAAAAAATAACACGCAAAAAAGTAGAAATGGAAAAGAAAAAAATTGTCTTGGAACAAGAAGTCAAAACGCTAAATGACTCCCTAAAGAAAGTTGAAAACAAGGTTAGTGCTATAGTGGATGAGAAGGAAAATGTAATAAAGGAAGTTGAAGGCAAACGAGCCTTACTTGAAATCAAAGAACGAGAACATAACCAATTGGTCAAGCTATTGGAATTAGCCAGAGAGAATGAAGCAACTTCATTAACTGAAAGAGGGATCTTGGATCTCAATTTACGCAACAGTCTCATTGACAAGCAGAACTACCATGATGAACTTTCTCGTAAGCAAAGAGAGAAAGAACGAGATTTTCGAAATTTAAGAAAGATGGAACTGCTCTTGAAAGTGTCCTGGGATGCACTTAGGCAAACTCAAGCACTGCATCAAAGGCTTCTATTAGAGATGGAAGCTATCCCCAAAGATGATTCTACATTATCTGAGAGAAGGCGAGAGCTTCACAAGGAAGTTGAAGTAGCTAAGAGGAATTTGGCCCAACAGAAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAGCAAAAATACACCAACATTGTTAAAGAAATGAAAGCAAAGGATCTTGAAATCAGGATACACAAGAAGAAAAAATGTGAAATTTATCGGAGACTGAGAGAGTTTGCTAAACTGTATGACACCATTCGAAATGAAAGAAACAAATTTGTTAACTTACTCCACAAAGCTCATCAGAAAGTAAATGAAATAAAAGAAAGGCATAAAATGTCATTAAATGAACTTGAAATTCTGAGAAATAGTGCCGTTAGTCAAGAAAGAAAGCTACAAAATTCCATGCTGAAACACGCCAACAATGTTACCATCAGAGAGAGCATGCAAAACGATGTGCGCAAAATTGTATCAAAACTTCAGGAAATGAAAGAAAAGAAGGAAGCCCAGTTAAATAACATTGACAGACTTGCCAACACGATCACAATGATCGAAGAGGAGATGGTGCAGCTTCGCAAAAGATACGAAAAAGCTGTTCAGCATCGAAATGAAAGTGGCGTTCAGCTGATAGAGCGGGAAGAAGAAATATGCATTTTTTATGAAAAAATAAATATCCAAGAGAAGATGAAACTAAATGGAGAAATTGAAATACATCTACTGGAAGAAAAGATCCAATTCCTGAAAATGAAGATTGCTGAGAAGCAAAGACAAATTTGTGTGACCCAGAAATTACTGCCAGCCAAGAGGTCCCTGGATGCCGACCTAGCTGTGCTCCAAATTCAGTTTTCACAGTGTACAGACAGAATTAAAGACCTGGAGAAACAGTTCGTAAAGCCTGATGGTGAGAATAGAGCTCGCTTCCTTCCAGGGAAAGATCTGACCGAAAAAGAAATGATCCAAAAATTAGACAAGCTGGAACTACAACTGGCCAAGAAGGAGGAGAAGCTGCTGGAGAAGGATTTCATCTATGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAACTCAGGGCTGCAAGCAGGACACACTGCTCTTAGCCAAGAAGATGAATGGCTATCAAAGAAGGATCAAAAATGCAACTGAGAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAAGTCAGGGAGAAAGAAGACTTCATCTTCACTTGCAATTCCAGGATAGAAAAAGGTCTGCCACTCAATAAGGAAATTGAGAAAGAATGGTTGAAAGTCCTTCGAGATGAAGAAATGCACGCCTTGGCCATCGCTGAAAAGTCTCAGGAGTTCTTGGAAGCAGATAATCGCCAGCTGCCCAATGGTGTTTACACAACTGCAGAGCAGCGTCCGAATGCCTACATCCCAGAAGCAGATGCCACTCTTCCTTTGCCAAAACCTTATGGTGCTTTGGCTCCTTTTAAACCCAGTGAACCTGGAGCCAATATGAGGCACATAAGGAAACCTGTTATAAAGCCAGTTGAAATCTGA MEQVEILRKFIQRVQAMKSPDHNGEDNFARDFMHTRVRGPTATECQTFH*ANTTAAVSPAAS**FSRSILHGGLQNERTTSQVSK*I*CSEGKRVP*SVQIK*LKGRKNHHSKRI*EDNKARRNGEEDENIERKH*RIT*RNNAEEIRN*KFTRRFGI*TKAIIKRAEGTRRIVGTSGRPKG*SGPPSNHSSTNWKRDRKNNTQKSRNGKEKNCLGTRSQNAK*LPKES*KQG*CYSG*EGKCNKGS*RQTSLT*NQRTRT*PIGQAIGISQRE*SNFIN*KRDLGSQFTQQSH*QAELP**TFS*AKRERTRFSKFKKDGTALESVLGCT*ANSSTASKASIRDGSYPQR*FYII*EKARASQGS*SS*EEFGPTENYIRNGV*VSRTTTCRRKQAFKGARKHERASSQPSPHDSNQN**KGTKVQGFPESSAKIHQHC*RNESKGS*NQDTQEEKM*NLSETERVC*TV*HHSK*KKQIC*LTPQSSSESK*NKRKA*NVIK*T*NSEK*CR*SRKKATKFHAETRQQCYHQREHAKRCAQNCIKTSGNERKEGSPVK*H*QTCQHDHNDRRGDGAASQKIRKSCSASK*KWRSADRAGRRNMHFL*KNKYPREDETKWRN*NTSTGRKDPIPENEDC*EAKTNLCDPEITASQEVPGCRPSCAPNSVFTVYRQN*RPGETVRKA*W*E*SSLPSRERSDRKRNDPKIRQAGTTTGQEGGEAAGEGFHL*AGLQAHRQALQQNSGLQAGHTALSQEDEWLSKKDQKCN*ENDGSCC*AVHETSPNH*TPKGSQGERRLHLHLQFQDRKRSATQ*GN*ERMVESPSR*RNARLGHR*KVSGVLGSR*SPAAQWCLHNCRAASECLHPRSRCHSSFAKTLWCFGSF*TQ*TWSQYEAHKETCYKAS*NL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30018 ATXN2::UNC5C ENSG00000204842.18::ENSG00000182168.16 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 930 FALSE NA FALSE NA ATXN2 ENSG00000204842.18 protein_coding - - chr12:111443485-111599676:- chr12:111552280:- chr12:111881289-112037480:- chr12:111990084:- UNC5C ENSG00000182168.16 protein_coding - - chr4:95162504-95549206:- chr4:95335631:- chr4:96083655-96470357:- chr4:96256782:- chr12:111543502,chr12:111543509 chr4:95419725,chr4:95419729 NA NA chr12:111981306,chr12:111981313 chr4:96340876,chr4:96340880 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TFIIA|163-210|3.3e-07^SM-ATX|265-341|2e-25^LSM|272-320|5e-06^LsmAD|409-476|2.3e-17^TFIIA|442-469|0.96^PAM2|533-538|2.2^TFIIA|571-879|0.62^TFIIA-PARTIAL|901-1051~|5^PAM2|909-925|1e-09 I-set|168-257|1.1e-13^Ig_3|173-243|5.8e-12^ig|177-251|1.4e-08^Ig_2|178-257|4.2e-08^V-set|221-251|0.00085^TSP_1|264-310|1.1e-11^TSP1_spondin|264-310|1.2e-09^TSP1_ADAMTS|267-300|2e-06^Ig_3|312-334|4.4^TSP_1|318-367|2e-05^TSP1_spondin|320-367|5.6e-06^ZU5|534-627|1e-36^Death|612-624|5^TSP1_spondin|637-658|4.5^UPA|678-817|2.1e-76^Ig_2|766-782|2.5^TSP1_ADAMTS|798-820|6.8^I-set|804-820|0.59^Ig_3|804-820|0.35^Ig_2|805-823|0.37^ig|805-821|0.94^V-set|805-818|5.8^Death|849-926|1e-20 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr4] 27 7 27 7 ONLY_REF_SPLICE YES_LDAS 0.3462 GT 1.7465 AG 1.7232 ENST00000550104.5 1-1051 ENST00000453304.6 125-2796 chr12|-|[0]111552280-111552430[0]|[2]111552906-111552977[0]|[2]111554158-111554217[0]|[2]111555883-111555919[2]|[1]111598784-111599514[0]<==>chr4|-|[2]95169234-95169399[2]|[1]95170154-95170332[0]|[2]95182897-95183061[0]|[2]95185047-95185196[0]|[2]95202731-95202964[0]|[2]95206628-95206796[2]|[1]95216124-95216211[1]|[0]95218969-95219313[1]|[0]95219985-95220176[1]|[0]95242429-95242593[1]|[0]95244977-95245144[1]|[0]95250487-95250667[0]|[2]95278259-95278362[1]|[0]95301606-95301749[1]|[0]95335410-95335631[1] atgcgctcagcggccgcagctcctcggagtcccgcggtggccaccgagtctcgccgcttcgccgcagccaggtggcccgggtggcgctcgctccagcggccggcgcggcggagcgggcggggcggcggtggcgcggccccgggaccgtatccctccgccgcccctcccccgcccggccccggcccccctccctcccggcagagctcgcctccctccgcctcagactgttttggtagcaacggcaacggcggcggcgcgtttcggcccggctcccggcggctccttggtctcggcgggcctccccgccccttcgtcgtcctccttctccccctcgccagcccgggcgcccctccggccgcgccaacccgcgcctccccgctcggcgcccgcgcgtccccgccgcgttccggcgtctccttggcgcgcccggctcccggctgtccccgcccggcgtgcgagccggtgtatgggcccctcaccatgtcgctgaagccccagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcagcagcagcagccgccgcccgcggctgccaatgtccgcaagcccggcggcagcggccttctagcgtcgcccgccgccgcgccttcgccgtcctcgtcctcggtctcctcgtcctcggccacggctccctcctcggtggtcgcggcgacctccggcggcgggaggcccggcctgggcagaggtcgaaacagtaacaaaggactgcctcagtctacgatttcttttgatggaatctatgcaaatatgaggatggttcatatacttacatcagttgttggctccaaatgtgaagtacaagtgaaaaatggaggtatatatgaaggagtttttaaaacttacagtccgaagtgtgatttggtacttgatgccgcacatgagaaaagtacagaatccagttcggggccgaaacgtgaagaaataatggagagtattttgttcaaatgttcagactttgttgtggtacagtttaaagatatggactccagttatgcaaaaagagATGATGACTTTTTTCATGAACTCCCAGAAACTTTTCCTTCTGATCCACCTGAGCCTCTGCCACATTTCCTTATTGAGCCTGAAGAAGCTTATATTGTGAAGAATAAGCCCGTGAACCTGTACTGTAAAGCAAGCCCTGCCACCCAGATCTATTTCAAGTGTAATAGTGAATGGGTTCATCAGAAGGACCACATAGTAGATGAAAGAGTAGATGAAACTTCCGGTCTCATTGTCCGGGAAGTGAGCATTGAGATTTCGCGCCAGCAAGTGGAAGAACTCTTTGGACCTGAAGATTACTGGTGCCAGTGTGTGGCCTGGAGCTCCGCGGGTACCACAAAGAGCCGGAAGGCGTATGTGCGCATTGCATATCTACGGAAGACATTTGAGCAGGAACCCCTAGGAAAGGAAGTGTCTTTGGAACAGGAAGTCTTACTCCAGTGTCGACCACCTGAAGGGATCCCAGTGGCTGAGGTGGAATGGTTGAAAAATGAAGACATAATTGATCCCGTTGAAGATCGGAATTTTTATATTACTATTGATCACAACCTCATCATAAAGCAGGCCCGACTCTCTGATACTGCAAATTACACCTGTGTTGCCAAAAACATTGTTGCCAAGAGGAAAAGTACAACTGCCACTGTCATAGTCTATGTCAACGGTGGCTGGTCCACCTGGACGGAGTGGTCTGTGTGTAACAGCCGCTGTGGACGAGGGTATCAGAAACGTACAAGGACTTGTACCAACCCGGCACCACTCAATGGGGGTGCCTTCTGTGAAGGGCAGAGTGTGCAGAAAATAGCCTGTACTACGTTATGCCCAGTGGATGGCAGGTGGACGCCATGGAGCAAGTGGTCTACTTGTGGAACTGAGTGCACCCACTGGCGCAGGAGGGAGTGCACGGCGCCAGCCCCCAAGAATGGAGGCAAGGACTGCGACGGCCTCGTCTTGCAATCCAAGAACTGCACTGATGGGCTTTGCATGCAGACTGCTCCTGATTCAGATGATGTTGCTCTCTATGTTGGGATTGTGATAGCAGTGATCGTTTGCCTGGCGATCTCTGTAGTTGTGGCCTTGTTTGTGTATCGGAAGAATCATCGTGACTTTGAGTCAGATATTATTGACTCTTCGGCACTCAATGGGGGCTTTCAGCCTGTGAACATCAAGGCAGCAAGACAAGATCTGCTGGCTGTACCCCCAGACCTCACGTCAGCTGCAGCCATGTACAGAGGACCTGTCTATGCCCTGCATGACGTCTCAGACAAAATCCCAATGACCAACTCTCCAATTCTGGATCCACTGCCCAACCTGAAAATCAAAGTGTACAACACCTCAGGTGCTGTCACCCCCCAAGATGACCTCTCTGAGTTTACGTCCAAGCTGTCCCCTCAGATGACCCAGTCGTTGTTGGAGAATGAAGCCCTCAGCCTGAAGAACCAGAGTCTAGCAAGGCAGACTGATCCATCCTGTACCGCATTTGGCAGCTTCAACTCGCTGGGAGGTCACCTTATTGTTCCCAATTCAGGAGTCAGCTTGCTGATTCCCGCTGGGGCCATTCCCCAAGGGAGAGTCTACGAAATGTATGTGACTGTACACAGGAAAGAAACTATGAGGCCACCCATGGATGACTCTCAGACACTTTTGACCCCTGTGGTGAGCTGTGGGCCCCCAGGAGCTCTGCTCACCCGCCCAGTCGTCCTCACTATGCATCACTGCGCAGACCCCAATACCGAGGACTGGAAAATACTGCTCAAGAACCAGGCAGCACAGGGACAGTGGGAGGATGTGGTGGTGGTCGGGGAGGAAAACTTCACCACCCCCTGCTACATTCAGCTGGATGCAGAGGCCTGCCACATCCTCACAGAGAACCTCAGCACCTACGCCCTGGTAGGACATTCCACCACCAAAGCGGCTGCGAAGCGCCTCAAGCTGGCCATCTTTGGGCCCCTGTGCTGCTCCTCGCTGGAGTACAGCATCCGAGTCTACTGTCTGGATGACACCCAGGATGCCCTGAAGGAAATTTTACATCTTGAGAGACAGATGGGAGGACAGCTCCTAGAAGAACCTAAGGCTCTTCATTTTAAAGGCAGCACCCACAACCTGCGCCTGTCAATTCACGATATCGCCCATTCCCTCTGGAAGAGCAAATTGCTGGCTAAATATCAGGAAATTCCATTTTACCATGTTTGGAGTGGATCTCAAAGAAACCTGCACTGCACCTTCACTCTGGAAAGATTTAGCCTGAACACAGTGGAGCTGGTTTGCAAACTCTGTGTGCGGCAGGTGGAAGGAGAAGGGCAGATCTTCCAGCTCAACTGCACCGTGTCAGAGGAACCTACTGGCATCGATTTGCCGCTGCTGGATCCTGCGAACACCATCACCACGGTCACGGGGCCCAGTGCTTTCAGCATCCCTCTCCCTATCCGGCAGAAGCTCTGTAGCAGCCTGGATGCCCCCCAGACGAGAGGCCATGACTGGAGGATGCTGGCCCATAAGCTGAACCTGGACAGGTACTTGAATTACTTTGCCACCAAATCCAGCCCAACTGGCGTAATCCTGGATCTTTGGGAAGCACAGAACTTCCCAGATGGAAACCTGAGCATGCTGGCAGCTGTCTTGGAAGAAATGGGAAGACATGAAACGGTGGTGTCCTTAGCAGCAGAAGGGCAGTATTAA MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGGPPRPFVVLLLPLASPGAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGRGRNSNKGLPQSTISFDGIYANMRMVHILTSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESILFKCSDFVVVQFKDMDSSYAKRDDDFFHELPETFPSDPPEPLPHFLIEPEEAYIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHIVDERVDETSGLIVREVSIEISRQQVEELFGPEDYWCQCVAWSSAGTTKSRKAYVRIAYLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDPVEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVYVNGGWSTWTEWSVCNSRCGRGYQKRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCPVDGRWTPWSKWSTCGTECTHWRRRECTAPAPKNGGKDCDGLVLQSKNCTDGLCMQTAPDSDDVALYVGIVIAVIVCLAISVVVALFVYRKNHRDFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNTSGAVTPQDDLSEFTSKLSPQMTQSLLENEALSLKNQSLARQTDPSCTAFGSFNSLGGHLIVPNSGVSLLIPAGAIPQGRVYEMYVTVHRKETMRPPMDDSQTLLTPVVSCGPPGALLTRPVVLTMHHCADPNTEDWKILLKNQAAQGQWEDVVVVGEENFTTPCYIQLDAEACHILTENLSTYALVGHSTTKAAAKRLKLAIFGPLCCSSLEYSIRVYCLDDTQDALKEILHLERQMGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIPFYHVWSGSQRNLHCTFTLERFSLNTVELVCKLCVRQVEGEGQIFQLNCTVSEEPTGIDLPLLDPANTITTVTGPSAFSIPLPIRQKLCSSLDAPQTRGHDWRMLAHKLNLDRYLNYFATKSSPTGVILDLWEAQNFPDGNLSMLAAVLEEMGRHETVVSLAAEGQY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30019 CMTM4::TERB1 ENSG00000183723.13::ENSG00000249961.10 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 932 FALSE NA FALSE NA CMTM4 ENSG00000183723.13 protein_coding - - chr16:66614750-66696743:- chr16:66696340:- chr16:66648653-66730646:- chr16:66730243:- TERB1 ENSG00000249961.10 protein_coding - - chr16:66754640-66801620:- chr16:66791019:- chr16:66788543-66835523:- chr16:66824922:- chr16:66657355,chr16:66657359 chr16:66791722,chr16:66791723 NA NA chr16:66691258,chr16:66691262 chr16:66825625,chr16:66825626 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MARVEL|54-170|1.4e-22 Arm|32-44|1.8^Atx10homo_assoc-PARTIAL|~32-52|2.9e-05^RICTOR_V|34-90|0.0014^Atx10homo_assoc|65-96|0.7^HEAT|66-88|0.0002^Arm|66-84|0.043^RICTOR_V|78-143|0.00017^Atx10homo_assoc|106-144|0.012^HEAT|110-131|1.4^Arm|139-154|0.97^Atx10homo_assoc|190-200|3^Atx10homo_assoc|227-262|1.5^Arm|241-262|0.81^Arm|294-309|0.89^Atx10homo_assoc|314-366|0.0021^Arm|330-361|0.0015^Myb_DNA-bind_6|384-414|1.3^Atx10homo_assoc|400-433|3.2^Myb_DNA-binding|671-718|6.1e-09^Myb_DNA-bind_6|674-716|7.6e-05 ["CCLE_StarF2019"] 26 2 26 2 ONLY_REF_SPLICE YES_LDAS 0.2851 GT 1.9329 AG 1.8295 ENST00000330687.8 1-186 ENST00000558713.6 32-2184 chr16|-|[2]66696340-66696525[0]<==>chr16|-|[2]66754976-66755163[1]|[0]66758773-66758838[1]|[0]66759141-66759290[1]|[0]66767415-66767510[1]|[0]66768104-66768168[2]|[1]66769963-66770309[0]|[2]66772589-66772749[1]|[0]66775118-66775243[1]|[0]66777203-66777334[1]|[0]66778863-66779015[1]|[0]66785786-66785908[1]|[0]66786014-66786129[2]|[1]66786225-66786285[1]|[0]66788169-66788297[1]|[0]66790595-66790723[1]|[0]66790909-66791019[1] atgcggagcggcgaggagctggacggcttcgagggcgaggcctcgagcacctccatgatctcgggcgccagcagcccgtaccagcccaccaccgagccggtgagccagcgccgcgggctggccggcctgcgctgcgaccccgactacctgcgcggcgcgctcggccgcctcaaggtcgcccaagtgAAATGAAGACTGACCTGAACTTATTATTGGAGTGTCTAAAGTATCAAATGGACAATGCTTTTTCACAAAAGGAAGCTTTGGTCACTATTCATTCAATTTGTCAACAAAACAGTAATGCAAGTGTTTATTTTCGGGAAATTGGTGGTTTGATGTTTGTAAAAAATCTTGCAAAGTCAAGTGAACATAGCATGGTAAAAGAAGCAGCCTTATATACATTAGGAGCTATTGCAGAGAAAAATGTTTACTGTCAGCAGACTTTGTGTACTTCAGAGTTGTTTGAAGACTTAACTTGGTTCTTATCTAATGATTCAAACATAAATTTGAAAAGAATGTCTGTTTATGTTATTTTGGTTCTGGTTTCAAATAATAGGACCGGACAAACACTTGTGAGAGAAACAGGTTGTATTACAGTTCTGTCACGGTTATTCAGGACAGTTATTTCAAAACATGAGTTGGATTTGTCAGATAAAAATGTTTTCCAGAGTTATCAGTTGTGGTCTTCAGTGTGTAGTACTCTGTGTGTCTGTGTCAACAATCCTCAAAATGATGAGAATCAAATGTTTTGCTGTTCCCTTTTTCCACATGCTAATGAATGGCTAAAAAATTGCACGACACCTGAGATAATTCGCCCTATTTGCTCATTTATTGGACTCACTCTTGCAAATAACACATATGTTCAGAAATACTTCGTATCTGTGGGCGGACTGGATGTATTGTCTCAAGTTCTCATGCAGCTGGAATCTGATTCACATGAGACTCTTTCCAGTGCTAAACTTGCAGTGGTTGTGACGAAGACTGTGGATGCATGCATTGCTGATAATCCTACTTTTGGGATAGTACTCTCCAAGTACCACATTGTTTCTAAACTTCTGGCATTACTGCTTCATGAAAGTCTGGATTCAGGAGAAAAATTTAGCATCATGCTTACTCTTGGTCATTGCACAGAGGATTGTGAGGAAAATCAGTATGACCTTTTTAAAAACAATGGGCTTCCACTCATGATTCAAGCCTTAACTGAATCGCAGAATGAGGAACTGAACAAAGCTGCCACATTTGTGCTTCACAACTGCAAAAAAATTACTGAGAAATTATCTCTAAGTCTAGGAGAATATCCTTTTGATGAAAATGAAACACAGCAATTAAAGGACATAAGTGTGAAGGAGAATAATCTTGAAGAGCACTGGAGGAAAGCAAAGGAAATTCTACACAGAATAGAACAGCTTGAAAGAGAAGGAAATGAGGAAGAAATACAAAGAGAAAACTATCAGGATAATATTTCATCTATGAACATAAGTATTCAGAATACATGGAAACATCTCCATGCAGATCGGATTGGTCGAGGTAGCAAAGCAGAAGATGAGGATAAAAGCCATTCTAGACAGTTACAGAGTTATAAGTCCCATGGAGTCATGTCTAAAGCATGTACAAATGATGACCAAATGAAGACACCGTTAAAGAGCGCAAATCCAGTCCATGCTTGTTACAGGGAGAGTGAGCAAAATAAGACTTTATATAAAGCCAAGTCAAGCTGCAATCAAAACTTACATGAAGAAACTACTTTTGAAAAGAATTTTGTTTCTCAATCAAGTGACCATGTTTTTAAACACCCAGTTCACATTGCCAAAAATATAAAGCAGCAGTTACCAGTAACAGATCCATTTACATTATGTTCAGATATAATAAATAAAGAAGTAGTCAGTTTTCTAGCAACTCCCAGTTGTTCCGAAATGTTGACGTATAGGTGCTCAGGTTGCATAGCAGTAGAAAAATCCCTGAATAGCCGAAACTTTAGCAAGCTCTTGCACTCTTGCCCATACCAATGTGATCGTCACAAAGTCATTGTGGAAGCTGAAGACAGATATAAAAGTGAACTAAGGAAATCACTTATCTGTAACAAAAAAATTCTGCTGACCCCACGTAGAAGACAACGACTCAGTAATGAATCTACTACCCCTGGAGGAATAAAAAAAAGAAGAATTCGCAAAAACTTTACTGAAGAAGAAGTAAATTACCTTTTCAATGGAGTTAAGAAAATGGGAAATCACTGGAATTCAATTTTGTGGTCTTTCCCCTTTCAGCAAGGACGGAAGGCTGTGGACCTTGCTCACAAATACCACAAGCTGACCAAACACCCCACGTGTGCAGCTTCTTGA MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVK*RLT*TYYWSV*SIKWTMLFHKRKLWSLFIQFVNKTVMQVFIFGKLVV*CL*KILQSQVNIAW*KKQPYIH*ELLQRKMFTVSRLCVLQSCLKT*LGSYLMIQT*I*KECLFMLFWFWFQIIGPDKHL*EKQVVLQFCHGYSGQLFQNMSWICQIKMFSRVISCGLQCVVLCVSVSTILKMMRIKCFAVPFFHMLMNG*KIARHLR*FALFAHLLDSLLQITHMFRNTSYLWADWMYCLKFSCSWNLIHMRLFPVLNLQWL*RRLWMHALLIILLLG*YSPSTTLFLNFWHYCFMKVWIQEKNLASCLLLVIAQRIVRKISMTFLKTMGFHS*FKP*LNRRMRN*TKLPHLCFTTAKKLLRNYL*V*ENILLMKMKHSN*RT*V*RRIILKSTGGKQRKFYTE*NSLKEKEMRKKYKEKTIRIIFHL*T*VFRIHGNISMQIGLVEVAKQKMRIKAILDSYRVISPMESCLKHVQMMTK*RHR*RAQIQSMLVTGRVSKIRLYIKPSQAAIKTYMKKLLLKRILFLNQVTMFLNTQFTLPKI*SSSYQ*QIHLHYVQI**IKK*SVF*QLPVVPKC*RIGAQVA*Q*KNP*IAETLASSCTLAHTNVIVTKSLWKLKTDIKVN*GNHLSVTKKFC*PHVEDNDSVMNLLPLEE*KKEEFAKTLLKKK*ITFSMELRKWEITGIQFCGLSPFSKDGRLWTLLTNTTS*PNTPRVQLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30021 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63487447:- chr2:63346694-64054977:- chr2:63714581:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44061132:+ chr1:44496086-44581585:+ chr1:44526804:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 10 14 6.67 ONLY_REF_SPLICE YES_LDAS 0.2105 GT 1.7465 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30023 EEPD1::CAMK2B ENSG00000122547.12::ENSG00000058404.21 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 933 FALSE NA FALSE NA EEPD1 ENSG00000122547.12 protein_coding + + chr7:36153254-36301538:+ chr7:36155202:+ chr7:36192863-36341147:+ chr7:36194811:+ CAMK2B ENSG00000058404.21 protein_coding - - chr7:44210019-44334577:- chr7:44284225:- chr7:44249618-44374176:- chr7:44323824:- chr7:36188346,chr7:36188343 chr7:44302304,chr7:44302307 NA NA chr7:36227955,chr7:36227952 chr7:44341903,chr7:44341906 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HHH_3|35-98|3.4e-23^PsbU|38-89|0.042^T2SSK|40-88|2.6e-07^HHH|41-67|1.2e-10^HHH_2|41-67|4.3e-05^HHH_5|44-66|0.00092^HHH_6|53-85|0.00063^HHH|76-94|0.0042^HHH_2|76-88|2.4^HHH_5|77-97|0.016^Plug|108-190|0.00035^PsbU|135-185|0.0025^HHH_3|136-195|2.2e-20^T2SSK|137-184|5e-08^HHH|138-164|7.5e-07^HHH_2|138-165|0.00033^HHH_5|141-164|0.0047^HHH_6|147-179|1.3e-06^HHH_5|147-181|0.0017^HHH|172-179|5.2^Exo_endo_phos|264-505|3.9e-10^Plug|430-457|5.5^PsbU|446-472|6.9 Pkinase-PARTIAL|~66-272|3.1e-78^PK_Tyr_Ser-Thr-PARTIAL|~66-265|8e-35^APH-PARTIAL|~66-124|0.0015^Kdo|100-158|1.7e-05^APH|115-147|0.00046^Pkinase_fungal|117-190|1.3e-05^CaMKII_AD|534-661|1.5e-62^DUF4440|538-651|9.8e-15^SnoaL_3|541-662|2.4e-13^SnoaL_4|541-651|2.7e-05^SnoaL_2|543-651|5.3e-08^PK_Tyr_Ser-Thr|557-566|3.7 ["CAMK2B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:7.92Mb] 13 3 13 2.65 ONLY_REF_SPLICE YES_LDAS 0.1594 GT 1.8892 AG 1.5219 ENST00000242108.9 1-878 ENST00000395749.7 66-2001 chr7|+|[0]36154325-36155202[1]<==>chr7|-|[2]44220062-44220294[1]|[0]44220616-44220710[2]|[1]44220826-44220901[1]|[0]44226516-44226644[1]|[0]44228796-44228924[1]|[0]44229388-44229501[1]|[0]44231006-44231054[0]|[2]44232822-44232866[0]|[2]44234390-44234461[0]|[2]44234639-44234676[1]|[0]44239589-44239663[1]|[0]44240707-44240749[0]|[2]44241700-44241783[0]|[2]44242218-44242340[0]|[2]44242560-44242654[1]|[0]44243250-44243333[1]|[0]44243425-44243527[0]|[2]44247120-44247192[2]|[1]44254542-44254607[2]|[1]44258872-44258926[1]|[0]44263005-44263064[1]|[0]44284131-44284225[2] atggggagcaccctgggctgccaccgctccatccccagggacccctcggacctgtcccatagccgcaagttcagcgcagcctgtaacttcagcaacattctagtgaatcaggagcggctcaacatcaacactgccacggaggaggagctgatgaccctgcctggggtgacgcgtgccgtggcacgcagcatcgtggagtaccgagagtatatcggtggcttcaagaaggtggaggacctggcattggtcagtggtgtaggcgccaccaagctggagcaggtcaagtttgagatctgtgtgagcagcaagggcagctcagcgcagcactctcccagttccctgcggcgggacctgctagcggagcagcagcctcaccacctggccacagctgtgcccctcaccccacgtgttaacatcaacacagccaccccggcccagctcatgagcgtgcgaggcctctcggagaaaatggccctcagcatcgtggacttccgccgtgagcatgggccctttcgcagcgttgaggacctagtgaggatggatggtatcaatgccgccttcctggacaggatccggcaccaggtgtttgctgagaggtccaggcccccatccacccacacgaacgggggactgaccttcaccgccaagcctcacccgagccccacttccctgagcctgcagagtgaggacctggacctgccgccaggggggcccacccagattatctccactcggccgtccgtggaggcctttggaggcacaagggatgggaggcctgtgctgaggctggccacctggaacttgcagggctgttccgtggagaaggccaacaaccccggggtgcgagaggtggtgtgcatgacactcctggaaaacagGGGGGCTTTCTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGCTGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTGCGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTTTGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCGTTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTGCAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTGGTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATCTGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCTGTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAAACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGGGTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGTGGGCAGACAGACCACCGCTCCGGCCACAATGTCCACCGCGGCCTCCGGCACCACCATGGGGCTGGTGGAACAAGCCAAGAGTTTACTCAACAAGAAAGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCCCCAAAGGGACGCTTCCTCCTGCCGCCCTGGAGCCTCAAACCACCGTCATCCATAACCCAGTGGACGGGATTAAGGAGTCTTCTGACAGTGCCAATACCACCATAGAGGATGAAGACGCTAAAGCCCCCAGGGTCCCCGACATCCTGAGCTCAGTGAGGAGGGGCTCGGGAGCCCCAGAAGCCGAGGGGCCCCTGCCCTGCCCATCTCCGGCTCCCTTTAGCCCCCTGCCAGCCCCATCCCCCAGGATCTCTGACATCCTGAACTCTGTGAGAAGGGGTTCAGGAACCCCAGAAGCCGAGGGCCCCCTCTCAGCGGGGCCCCCGCCCTGCCTGTCTCCGGCTCTCCTAGGCCCCCTGTCCTCCCCGTCCCCCAGGATCTCTGACATCCTGAACTCTGTGAGGAGGGGCTCAGGGACCCCAGAAGCCGAGGGCCCCTCGCCAGTGGGGCCCCCGCCCTGCCCATCTCCGACTATCCCTGGCCCCCTGCCCACCCCATCCCGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTTCGAGAACCTGCTGGCCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCACCGCCGCGACGGCAAGTGGCAGAACGTGCACTTCCACTGCTCGGGCGCGCCTGTGGCCCCGCTGCAGTGA MGSTLGCHRSIPRDPSDLSHSRKFSAACNFSNILVNQERLNINTATEEELMTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFEICVSSKGSSAQHSPSSLRRDLLAEQQPHHLATAVPLTPRVNINTATPAQLMSVRGLSEKMALSIVDFRREHGPFRSVEDLVRMDGINAAFLDRIRHQVFAERSRPPSTHTNGGLTFTAKPHPSPTSLSLQSEDLDLPPGGPTQIISTRPSVEAFGGTRDGRPVLRLATWNLQGCSVEKANNPGVREVVCMTLLENRGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITAHEALKHPWVCQRSTVASMMHRQETVECLKKFNARRKLKGAILTTMLATRNFSVGRQTTAPATMSTAASGTTMGLVEQAKSLLNKKADGVKPQTNSTKNSAAATSPKGTLPPAALEPQTTVIHNPVDGIKESSDSANTTIEDEDAKAPRVPDILSSVRRGSGAPEAEGPLPCPSPAPFSPLPAPSPRISDILNSVRRGSGTPEAEGPLSAGPPPCLSPALLGPLSSPSPRISDILNSVRRGSGTPEAEGPSPVGPPPCPSPTIPGPLPTPSRKQEIIKTTEQLIEAVNNGDFEAYAKICDPGLTSFEPEALGNLVEGMDFHRFYFENLLAKNSKPIHTTILNPHVHVIGEDAACIAYIRLTQYIDGQGRPRTSQSEETRVWHRRDGKWQNVHFHCSGAPVAPLQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Calcium/calmodulin-dependent protein kinase type II subunit beta CAMK CAMK2 Q13554 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30024 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39069134:- chr4:39068594-39183878:- chr4:39070754:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 5 12 2.61 ONLY_REF_SPLICE YES_LDAS 0.1488 GT 1.9329 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30028 CCSER1::ENSG00000249207 ENSG00000184305.16::ENSG00000249207.2 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 1620 TRUE 639 CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90628232:+ chr4:91048545-92526446:+ chr4:91549383:+ ENSG00000249207 ENSG00000249207.2 lncRNA - - chr4:39066974-39182258:- chr4:39177693:- chr4:39068594-39183878:- chr4:39179313:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 9 7 6.39 ONLY_REF_SPLICE YES_LDAS 0.1364 GT 1.9329 AG 1.1589 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30029 WDPCP::ENSG00000230615 ENSG00000143951.16::ENSG00000230615.8 NCIH211 SRR8615607 SRR8652057 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1618 TRUE 637 WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63487447:- chr2:63346694-64054977:- chr2:63714581:- ENSG00000230615 ENSG00000230615.8 lncRNA + + chr1:44030414-44115913:+ chr1:44059120:+ chr1:44496086-44581585:+ chr1:44524792:+ chr2:63487191,chr2:63487197 chr1:44056793,chr1:44056787 NA NA chr2:63714325,chr2:63714331 chr1:44522465,chr1:44522459 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 13 4 6.33 INCL_NON_REF_SPLICE YES_LDAS 0.1052 GT 1.7465 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30030 SOX5::PTPN22 ENSG00000134532.20::ENSG00000134242.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 935 TRUE 1641 TRUE 645 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23543211:- chr12:23682438-24715478:- chr12:23696145:- PTPN22 ENSG00000134242.16 protein_coding - - chr1:113813811-113871753:- chr1:113830029:- chr1:114356433-114414375:- chr1:114372651:- chr12:23542344 chr1:113832834 NA NA chr12:23695278 chr1:114375456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HMG_box_2|147-174|0.32^MPS2|161-274|0.00022^HMG_box|163-174|2.4^Exonuc_VII_L|195-266|0.00051^MPS2|455-492|0.18^Exonuc_VII_L|458-510|0.026^HMG_box_2|460-475|0.34^HMG_box|556-624|3.7e-26^HMG_box_2|557-619|1.3e-11 none ["SOX5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr1] 81 31 81 28.21 ONLY_REF_SPLICE YES_LDAS 1.7933 GT 1.9329 AG 1.7465 ENST00000451604.7 1-1771 ENST00000359785.10 2054-2424 chr12|-|[0]23543211-23543384[1]|[0]23546316-23546424[0]|[2]23563258-23563403[1]|[0]23575661-23575838[0]|[2]23604387-23604533[0]|[2]23640812-23640897[1]|[0]23665444-23665564[0]|[2]23734684-23734752[0]|[2]23740867-23741039[1]|[0]23755638-23755724[1]|[0]23845983-23846193[0]|[2]23895793-23896024[2]|[1]23949564-23949601[0]<==>chr1|-|[2]113814905-113814969[1]|[0]113819577-113819654[1]|[0]113825142-113825172[0]|[2]113829592-113829707[1]|[0]113829949-113830029[1] atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcctctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggaagaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaacaagcctcactctgaggaatttcagccagtttctctgctgacgcaagagacttgtggccataggactcccacttctcagcacaatacaatggaagttgatggcaataaagttatgtcttcatttgccccacacaactcatctacctcacctcagaaggcagaagaaggtgggcgacagagtggcgagtccttgtctagtacagccctgggaactcctgaacggcgcaagggcagtttagctgatgttgttgacaccttgaagcagaggaaaatggaagagctcatcaaaaacgagccggaagaaacccccagtattgaaaaactactctcaaaggactggaaagacaagcttcttgcaatgggatcggggaactttggcgaaataaaagggactcccgagagcttagctgagaaagaaaggcaactcatgggtatgatcaaccagctgaccagcctccgagagcagctgttggctgcccacgatgagcagaagaaactagctgcctctcagattgagaaacagcgtcagcaaatggagctggccaagcagcaacaagaacaaattgcaagacagcagcagcagcttctacagcaacaacacaaaatcaatttgctccagcaacagatccaggttcaaggtcagctgccgccattaatgattcccgtattccctcctgatcaacggacactggctgcagctgcccagcaaggattcctcctccctccaggcttcagctataaggctggatgtagtgacccttaccctgttcagctgatcccaactaccatggcagctgctgccgcagcaacaccaggcttaggcccactccaactgcagcagttatatgctgcccagctagctgcaatgcaggtatctccaggagggaagctgccaggcataccccaaggcaaccttggtgctgctgtatctcctaccagcattcacacagacaagagcacaaacagcccaccacccaaaagcaaggatgaagtggcacagccactgaacctatcagctaaacccaagacctctgatggcaaatcacccacatcacccacctctccccatatgccagctctgagaataaacagtggggcaggccccctcaaagcctctgtcccagcagcgttagctagtccttcagccagagttagcacaataggttacttaaatgaccatgatgctgtcaccaaggcaatccaagaagctcggcaaatgaaggagcaactccgacgggaacaacaggtgcttgatgggaaggtggctgttgtgaatagtctgggtctcaataactgccgaacagaaaaggaaaaaacaacactggagagtctgactcagcaactggcagttaaacagaatgaagaaggaaaatttagccatgcaatgatggatttcaatctgagtggagattctgatggaagtgctggagtctcagagtcaagaatttatagggaatcccgagggcgtggtagcaatgaaccccacataaagcgtccaatgaatgccttcatggtgtgggctaaagatgaacggagaaagatccttcaagcctttcctgacatgcacaactccaacatcagcaagatattggAACTACATCAAGATCGTTCTTCTCCCCCACCTCCTCTCCCAGAAAGAACTCTAGAGTCCTTCTTTCTTGCCGATGAAGATTGTATGCAGGCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAGAGTTTGAAAATTTTGCGAAACATGAAAAAGAGTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTGGTTTTGCAAACCGTTTTTCAAAACCCAAAGGACCAAGGAATCCACCACCAACTTGGAATATTTAA MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILELHQDRSSPPPPLPERTLESFFLADEDCMQAQSIETYSTSYPDTMENSTSSKQTLKTPGKSFTRSKSLKILRNMKKSICNSCPPNKPAESVQSNNSSSFLNFGFANRFSKPKGPRNPPPTWNI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30031 KIAA0319L::ENSG00000284719 ENSG00000142687.19::ENSG00000284719.3 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA0319L ENSG00000142687.19 protein_coding - - chr1:35393883-35557950:- chr1:35474805:- chr1:35859484-36023551:- chr1:35940406:- ENSG00000284719 ENSG00000284719.3 lncRNA + + chr1:39799419-39809450:+ chr1:39804878:+ chr1:40265091-40275122:+ chr1:40270550:+ chr1:35474798,chr1:35474800 chr1:39803575,chr1:39803573 NA NA chr1:35940399,chr1:35940401 chr1:40269247,chr1:40269245 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 52 45 52 45 ONLY_REF_SPLICE YES_LDAS 1.5928 GT 1.6402 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30035 LEPROT::KIF3C ENSG00000213625.9::ENSG00000084731.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 940 FALSE NA FALSE NA LEPROT ENSG00000213625.9 protein_coding + + chr1:65420587-65436007:+ chr1:65425378:+ chr1:65886270-65901690:+ chr1:65891061:+ KIF3C ENSG00000084731.15 protein_coding - - chr2:25926598-25982749:- chr2:25930063:- chr2:26149467-26205618:- chr2:26152932:- chr1:65427516,chr1:65427515 chr2:25940547,chr2:25940546 NA NA chr1:65893199,chr1:65893198 chr2:26163416,chr2:26163415 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Vps55-PARTIAL|16-119~|1.6e-38^DUF4231|29-29|0.27^DUF4231-PARTIAL|68-119~|0.0001 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr2] 32 6 32 6 ONLY_REF_SPLICE YES_LDAS 0.624 GT 1.8256 AG 1.9329 ENST00000613538.1 1-119 ENST00000264712.8 2007-2382 chr1|+|[0]65421417-65421459[0]|[1]65425303-65425378[1]<==>chr2|-|[2]25928978-25929071[2]|[1]25929305-25929477[0]|[2]25929955-25930063[2] atgcgagacggaaaaggttttttgcaaggcttcctgtattttgctctcgtggcattatccttcagtggggctattggactgacttttcttatgctgggatgtgccttagaggattatggCAGTAGCAGCCAGATGAAGAAGCGGCCAACATCTGCAGTGGGCTACAAGAGGCCTATCAGCCAGTATGCTCGGGTTGCCATGGCAATGGGGTCCCACCCCAGGTACAGGGCTGAAAACATAATGTTTCTGGAGTTGGATGTGTCCCCTCCAGCTGTCTTTGAGATGGAATTCTCTCACGACCAAGAACAAGACCCTCGTGCGCTACACATGGAGAGGCTCATGCGATTGGACAGCTTTCTGGAAAGACCTTCCACGTCTAAAGTCCGAAAGTCCAGATCCTGGTGCCAGAGTCCTCAGCGGCCTCCACCTTCCACCACACATGCCTCCCTGGCCTCTGCTTCTCTGCGCCCTGCAACAGTGGCGGACCATGAGTGA MRDGKGFLQGFLYFALVALSFSGAIGLTFLMLGCALEDYGSSSQMKKRPTSAVGYKRPISQYARVAMAMGSHPRYRAENIMFLELDVSPPAVFEMEFSHDQEQDPRALHMERLMRLDSFLERPSTSKVRKSRSWCQSPQRPPPSTTHASLASASLRPATVADHE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30038 DTD1::RALGAPA2 ENSG00000125821.13::ENSG00000188559.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 943 FALSE NA FALSE NA DTD1 ENSG00000125821.13 protein_coding + + chr20:18587942-18766644:+ chr20:18593821:+ chr20:18568586-18747288:+ chr20:18574465:+ RALGAPA2 ENSG00000188559.16 protein_coding - - chr20:20389530-20712644:- chr20:20412148:- chr20:20370174-20693287:- chr20:20392792:- chr20:18595660,chr20:18595658 chr20:20432312,chr20:20432311 NA NA chr20:18576304,chr20:18576302 chr20:20412956,chr20:20412955 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Tyr_Deacylase-PARTIAL|2-134~|2.5e-58^Kinocilin|7-62|5.3e-06^DUF6591|86-113|0.58^RnlA_toxin_N-PARTIAL|112-134~|5.6e-05^DUF6591-PARTIAL|127-134~|0.00013 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.63Mb] 20 6 20 5.38 ONLY_REF_SPLICE YES_LDAS 0.4167 GT 1.8892 AG 1.9086 ENST00000377452.4 1-134 ENST00000430436.5 4946-5222 chr20|+|[0]18588073-18588115[0]|[1]18593731-18593821[1]<==>chr20|-|[2]20393099-20393253[1]|[0]20412027-20412148[2] atgaaggccgtggtgcagcgcgtcacccgggccagcgtcacagttggaggagagcagattagtgccattggaaggggcatatgtgtgttgctgggtatttccctggaggatacgcagaaggaactggaacacatCTATGAAGAGCGAGCTCTGTATCTCGAAGCAATAATTCAGAACCACCGCGAAGTAATGACATTCGAGGATTTCGCAGCCCAAGTCTTTTCTCCCTCTCCCAGCTACTCCCTCAGCGGAACGGGGGCCCTGGCCTCCAGTCTGAGTGCTGACCTCGAAGAGCCCCTGAGTGAGGAGGAGACAGAACACCCTCTCCTGCCTCTGCCCCGAGCCACTAAACCCAGAATCTCCAGGAAATTTCGTTGCTGTACTAGTGCCCTCAGCAGGTCTTCCCATTAG MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHIYEERALYLEAIIQNHREVMTFEDFAAQVFSPSPSYSLSGTGALASSLSADLEEPLSEEETEHPLLPLPRATKPRISRKFRCCTSALSRSSH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 18608877|18608877 FALSE|FALSE 20527476|20517428 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30039 LINC01194::ENSG00000256226 ENSG00000248131.6::ENSG00000256226.1 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 939 FALSE NA FALSE NA LINC01194 ENSG00000248131.6 lncRNA + + chr5:12574830-12804363:+ chr5:12575052:+ chr5:12574942-12804475:+ chr5:12575164:+ ENSG00000256226 ENSG00000256226.1 lncRNA - - chr12:27105151-27161393:- chr12:27105258:- chr12:27258084-27314326:- chr12:27258191:- chr5:12585994,chr5:12585993 chr12:27151277,chr12:27151278 NA NA chr5:12586106,chr5:12586105 chr12:27304210,chr12:27304211 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 13 19 13 ONLY_REF_SPLICE YES_LDAS 0.5255 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30041 SOX5::PTPN22 ENSG00000134532.20::ENSG00000134242.16 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 936 TRUE 1641 TRUE 645 SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:23543211:- chr12:23682438-24715478:- chr12:23696145:- PTPN22 ENSG00000134242.16 protein_coding - - chr1:113813811-113871753:- chr1:113829707:- chr1:114356433-114414375:- chr1:114372329:- chr12:23542344 chr1:113832834 NA NA chr12:23695278 chr1:114375456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HMG_box_2|147-174|0.32^MPS2|161-274|0.00022^HMG_box|163-174|2.4^Exonuc_VII_L|195-266|0.00051^MPS2|455-492|0.18^Exonuc_VII_L|458-510|0.026^HMG_box_2|460-475|0.34^HMG_box|556-624|3.7e-26^HMG_box_2|557-619|1.3e-11 none ["SOX5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr1] 16 19 16 2.79 ONLY_REF_SPLICE YES_LDAS 0.3085 GT 1.9329 AG 1.9899 ENST00000451604.7 1-1771 ENST00000359785.10 2135-2424 chr12|-|[0]23543211-23543384[1]|[0]23546316-23546424[0]|[2]23563258-23563403[1]|[0]23575661-23575838[0]|[2]23604387-23604533[0]|[2]23640812-23640897[1]|[0]23665444-23665564[0]|[2]23734684-23734752[0]|[2]23740867-23741039[1]|[0]23755638-23755724[1]|[0]23845983-23846193[0]|[2]23895793-23896024[2]|[1]23949564-23949601[0]<==>chr1|-|[2]113814905-113814969[1]|[0]113819577-113819654[1]|[0]113825142-113825172[0]|[2]113829592-113829707[1] atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcctctccgtatggggaagcagatggagaggtagccatggtgacaagcagacagaaagtggaagaagaggagagtgacgggctcccagcctttcaccttcccttgcatgtgagttttcccaacaagcctcactctgaggaatttcagccagtttctctgctgacgcaagagacttgtggccataggactcccacttctcagcacaatacaatggaagttgatggcaataaagttatgtcttcatttgccccacacaactcatctacctcacctcagaaggcagaagaaggtgggcgacagagtggcgagtccttgtctagtacagccctgggaactcctgaacggcgcaagggcagtttagctgatgttgttgacaccttgaagcagaggaaaatggaagagctcatcaaaaacgagccggaagaaacccccagtattgaaaaactactctcaaaggactggaaagacaagcttcttgcaatgggatcggggaactttggcgaaataaaagggactcccgagagcttagctgagaaagaaaggcaactcatgggtatgatcaaccagctgaccagcctccgagagcagctgttggctgcccacgatgagcagaagaaactagctgcctctcagattgagaaacagcgtcagcaaatggagctggccaagcagcaacaagaacaaattgcaagacagcagcagcagcttctacagcaacaacacaaaatcaatttgctccagcaacagatccaggttcaaggtcagctgccgccattaatgattcccgtattccctcctgatcaacggacactggctgcagctgcccagcaaggattcctcctccctccaggcttcagctataaggctggatgtagtgacccttaccctgttcagctgatcccaactaccatggcagctgctgccgcagcaacaccaggcttaggcccactccaactgcagcagttatatgctgcccagctagctgcaatgcaggtatctccaggagggaagctgccaggcataccccaaggcaaccttggtgctgctgtatctcctaccagcattcacacagacaagagcacaaacagcccaccacccaaaagcaaggatgaagtggcacagccactgaacctatcagctaaacccaagacctctgatggcaaatcacccacatcacccacctctccccatatgccagctctgagaataaacagtggggcaggccccctcaaagcctctgtcccagcagcgttagctagtccttcagccagagttagcacaataggttacttaaatgaccatgatgctgtcaccaaggcaatccaagaagctcggcaaatgaaggagcaactccgacgggaacaacaggtgcttgatgggaaggtggctgttgtgaatagtctgggtctcaataactgccgaacagaaaaggaaaaaacaacactggagagtctgactcagcaactggcagttaaacagaatgaagaaggaaaatttagccatgcaatgatggatttcaatctgagtggagattctgatggaagtgctggagtctcagagtcaagaatttatagggaatcccgagggcgtggtagcaatgaaccccacataaagcgtccaatgaatgccttcatggtgtgggctaaagatgaacggagaaagatccttcaagcctttcctgacatgcacaactccaacatcagcaagatattggGTATGCAGGCCCAATCTATAGAAACATATTCTACTAGCTATCCTGACACCATGGAAAATTCAACATCTTCAAAACAGACACTGAAGACTCCTGGAAAAAGTTTCACAAGGAGTAAGAGTTTGAAAATTTTGCGAAACATGAAAAAGAGTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGAATTTTGGTTTTGCAAACCGTTTTTCAAAACCCAAAGGACCAAGGAATCCACCACCAACTTGGAATATTTAA MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNLSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGMQAQSIETYSTSYPDTMENSTSSKQTLKTPGKSFTRSKSLKILRNMKKSICNSCPPNKPAESVQSNNSSSFLNFGFANRFSKPKGPRNPPPTWNI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30042 MARCHF6::FILIP1L ENSG00000145495.17::ENSG00000168386.19 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MARCHF6 ENSG00000145495.17 protein_coding + + chr5:10353695-10440388:+ chr5:10414502:+ chr5:10353807-10440500:+ chr5:10414614:+ FILIP1L ENSG00000168386.19 protein_coding - - chr3:99828811-100114513:- chr3:99931030:- chr3:99547655-99833357:- chr3:99649874:- chr5:10414917,chr5:10414886 chr3:100041703,chr3:100041743 NA NA chr5:10415029,chr5:10414998 chr3:99760547,chr3:99760587 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 9 16 8.06 ONLY_REF_SPLICE YES_LDAS 0.3951 GT 1.9086 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-10397 chr5:10402364-10402431:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30043 LTBP1::NEGR1 ENSG00000049323.16::ENSG00000172260.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 941 TRUE 1645 TRUE 649 LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33134960:+ chr2:33172020-33624576:+ chr2:33360027:+ NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:71776297:- chr1:71861626-72748222:- chr1:72241980:- chr2:33155670 chr1:71858257 NA NA chr2:33380737 chr1:72323940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EGF_CA|169-186|4.4^EGF_MSP1_1|172-186|9^TB|173-186|9^EGF|191-216|1.2e-05^hEGF|195-212|0.00082^FXa_inhibition|197-218|4.3^EGF_MSP1_1|206-212|1.9^EGF_CA|207-212|9^cEGF|207-212|1.2^EGF_3|207-215|0.52^Plasmod_Pvs28|207-218|4.5^Plasmod_Pvs28|363-378|9^EGF_CA|365-373|9^EGF|365-374|9^FXa_inhibition|367-376|9^hEGF|368-372|9^EGF|403-428|3.3e-07^hEGF|407-423|3.9e-05^FXa_inhibition|407-426|9^EGF_MSP1_1|416-425|4.9^EGF_3|417-427|0.21^EGF_CA|418-426|8^cEGF|418-423|0.51^Plasmod_Pvs28|418-426|9^TB|567-609|1.5e-11^cEGF|611-629|1.7e-05^hEGF|611-616|4.8^EGF_CA|612-617|9^EGF_MSP1_1|612-625|0.0048^EGF_CA|626-665|2.8e-11^Plasmod_Pvs28|629-657|4.3e-06^EGF|630-657|0.002^hEGF|636-656|0.00011^EGF_MSP1_1|636-656|0.0012^EGF_3|637-656|0.00021^FXa_inhibition|639-656|0.0034^cEGF|647-656|0.019^cEGF|680-689|1.2^TB|688-729|1.5e-19^EGF_CA|874-913|2.1e-07^EGF|877-905|2.5e-07^EGF_3|877-906|9.9e-05^FXa_inhibition|877-913|6.5e-08^Plasmod_Pvs28|883-914|0.00021^hEGF|887-904|0.1^EGF_MSP1_1|889-914|0.13^cEGF|896-918|4.3e-11^EGF_CA|915-955|4.3e-14^EGF|919-946|5.8e-06^EGF_3|919-947|4.4e-05^FXa_inhibition|919-955|1.2e-05^hEGF|926-946|1.5e-07^Plasmod_Pvs28|926-955|0.011^EGF_MSP1_1|932-956|0.023^cEGF|937-960|5.5e-10^EGF_CA|957-996|5.1e-11^EGF|964-988|0.23^Plasmod_Pvs28|966-990|0.21^FXa_inhibition|967-994|0.018^hEGF|968-982|0.41^EGF_MSP1_1|968-996|9^EGF_3|971-989|0.063^cEGF|979-1001|4.1e-05^EGF_CA|998-1035|2e-10^EGF_MSP1_1|1001-1037|0.048^Plasmod_Pvs28|1002-1029|0.075^EGF|1004-1031|0.14^hEGF|1008-1023|0.034^FXa_inhibition|1008-1030|0.01^EGF_3|1009-1031|0.004^cEGF|1019-1041|7.4e-05^TB|1025-1036|9^EGF_CA|1038-1077|4.4e-12^EGF_MSP1_1|1041-1070|0.008^EGF|1043-1069|9.9e-05^Plasmod_Pvs28|1046-1075|0.00011^hEGF|1048-1068|1.6e-05^EGF_3|1050-1069|2.5e-05^FXa_inhibition|1053-1077|0.00017^cEGF|1059-1082|3.2e-12^EGF_CA|1079-1118|8e-12^EGF_MSP1_1|1082-1113|2.1^EGF|1083-1110|3.3e-05^Plasmod_Pvs28|1083-1110|0.00037^hEGF|1089-1109|0.00013^EGF_3|1090-1110|1.8e-05^FXa_inhibition|1092-1118|4.1e-05^cEGF|1100-1123|1.5e-10^TB|1105-1130|9^EGF_CA|1120-1159|4e-13^EGF_MSP1_1|1123-1154|0.021^Plasmod_Pvs28|1124-1150|4.4e-05^EGF|1126-1150|2.2e-05^hEGF|1130-1150|1.1e-06^FXa_inhibition|1130-1153|0.0023^EGF_3|1132-1154|2.5e-05^cEGF|1141-1164|4.1e-09^EGF_CA|1161-1200|2e-12^EGF|1165-1193|0.00013^FXa_inhibition|1165-1200|5.5e-07^EGF_MSP1_1|1165-1201|0.00025^Plasmod_Pvs28|1171-1200|1.7e-05^hEGF|1172-1192|3.9e-06^EGF_3|1175-1195|1.4e-05^cEGF-PARTIAL|1183-1201~|2.1e-12 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr1] 14 18 14 17.49 ONLY_REF_SPLICE YES_LDAS 0.5171 GT 1.9656 AG 1.8062 ENST00000404816.7 1-1201 ENST00000357731.10 410-1065 chr2|+|[0]32947325-32947818[1]|[2]32948875-32948945[0]|[1]33020909-33021206[1]|[2]33110582-33110751[0]|[1]33134793-33134960[0]<==>chr1|-|[2]71407446-71407570[1]|[0]71592817-71592968[2]|[1]71611026-71611146[1]|[0]71698008-71698139[1]|[0]71776172-71776297[1] atggcgggggcctggctcaggtgggggctcctgctctgggcagggctcctcgcgtcctcggcgcacggccggctgcggaggatcacctacgtggtgcacccgggccccggcctggcagccggcgccttgcccctgagcgggcccccgcgttcgcggacattcaacgtcgcgctcaacgccaggtacagccgcagctcggcggctgccggcgcccccagccgtgcctcccccggggtcccctcggagaggacccggcgcacgagcaagccgggcggcgcggccctgcaggggctcagaccgccgccgccgccgccgccggagcctgcgcgtcccgcggtccccggcgggcagctccaccccaatcccggcggccacccggcagccgccccgttcaccaaacaaggcaggcaagttgtgcgctccaaggtgccgcaggagacccagagcggcggaggctctaggctgcaggttcaccagaagcagcagctgcagggggtcaatgtctgtggagggcggtgctgtcatggctggagtaaggcccctggctcccagaggtgcaccaaacctagctgtgttccgccatgtcagaatggagggatgtgtctccggccacaactctgtgtgtgtaaaccagggaccaagggcaaagcctgtgaaacaatagctgcccaggacacctcgtcaccagtctttggagggcagagtcctggggctgcttcctcgtggggccctcctgagcaagcagcaaagcatacttcatctaagaaggcagacactctaccaagagtcagccctgtggcccagatgaccttaaccctcaagccgaagccttcagtgggactcccccagcagatacattctcaagtgactcctctttcttcccagagtgtggtgattcaccatggccagacccaggaatacgtgctcaagcccaagtactttccagcccagaaggggatttcaggagagcagtccactgaaggttctttccctttaagatatgtgcaggatcaagttgcggcaccttttcagctgagtaaccacactggccgcatcaaggtggtctttactccgagcatctgtaaagtgacctgcaccaagggcagctgtcagaacagctgtgagaaggggaacaccaccactctcattagtgagaatggtcatgctgccgacaccctgacggccacgaacttccgagtggTTCCTCCTAAGATATATGACATCTCAAATGATATGACCGTCAATGAAGGAACCAACGTCACTCTTACTTGTTTGGCCACTGGGAAACCAGAGCCTTCCATTTCTTGGCGACACATCTCCCCATCAGCAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAATTACAAGGGACCAGGCTGGGGAATATGAATGCAGTGCGGAAAATGATGTGTCATTCCCAGATGTGAGGAAAGTAAAAGTTGTTGTCAACTTTGCTCCTACTATTCAGGAAATTAAATCTGGCACCGTGACCCCCGGACGCAGTGGCCTGATAAGATGTGAAGGTGCAGGTGTGCCGCCTCCAGCCTTTGAATGGTACAAAGGAGAGAAGAAGCTCTTCAATGGCCAACAAGGAATTATTATTCAAAATTTTAGCACAAGATCCATTCTCACTGTTACCAACGTGACACAGGAGCACTTCGGCAATTATACCTGTGTGGCTGCCAACAAGCTAGGCACAACCAATGCGAGCCTGCCTCTTAACCCTCCAAGTACAGCCCAGTATGGAATTACCGGGAGCGCTGATGTTCTTTTCTCCTGCTGGTACCTTGTGTTGACACTGTCCTCTTTCACCAGCATATTCTACCTGAAGAATGCCATTCTACAATAA MAGAWLRWGLLLWAGLLASSAHGRLRRITYVVHPGPGLAAGALPLSGPPRSRTFNVALNARYSRSSAAAGAPSRASPGVPSERTRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNPGGHPAAAPFTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQLQGVNVCGGRCCHGWSKAPGSQRCTKPSCVPPCQNGGMCLRPQLCVCKPGTKGKACETIAAQDTSSPVFGGQSPGAASSWGPPEQAAKHTSSKKADTLPRVSPVAQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQSTEGSFPLRYVQDQVAAPFQLSNHTGRIKVVFTPSICKVTCTKGSCQNSCEKGNTTTLISENGHAADTLTATNFRVVPPKIYDISNDMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVKVVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFSTRSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLTLSSFTSIFYLKNAILQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30044 RERE::SPSB1 ENSG00000142599.20::ENSG00000171621.14 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 944 FALSE NA FALSE NA RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8848017:- chr1:8412457-8908980:- chr1:8908076:- SPSB1 ENSG00000171621.14 protein_coding + + chr1:9292894-9369532:+ chr1:9355743:+ chr1:9352953-9429591:+ chr1:9415802:+ chr1:8832026,chr1:8832028 chr1:9345648,chr1:9345646 NA NA chr1:8892085,chr1:8892087 chr1:9405707,chr1:9405705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RERE:Oncogene"];INTRACHROMOSOMAL[chr1:0.48Mb] 13 8 13 8 ONLY_REF_SPLICE YES_LDAS 0.3449 GT 1.5656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30052 ZFP69B::BEND5 ENSG00000187801.15::ENSG00000162373.13 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 947 FALSE NA FALSE NA ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40450175:+ chr1:40915774-40929390:+ chr1:40915847:+ BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48736452:- chr1:49193191-49242641:- chr1:49202124:- chr1:40450696,chr1:40450697 chr1:48740743,chr1:48740742 NA NA chr1:40916368,chr1:40916369 chr1:49206415,chr1:49206414 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:8.26Mb] 8 5 8 5 ONLY_REF_SPLICE YES_LDAS 0.2135 GT 1.4566 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30056 LTBP1::NEGR1 ENSG00000049323.16::ENSG00000172260.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 942 TRUE 1645 TRUE 649 LTBP1 ENSG00000049323.16 protein_coding + + chr2:32946953-33399509:+ chr2:33110751:+ chr2:33172020-33624576:+ chr2:33335818:+ NEGR1 ENSG00000172260.15 protein_coding - - chr1:71395943-72282539:- chr1:71776297:- chr1:71861626-72748222:- chr1:72241980:- chr2:33155670 chr1:71858257 NA NA chr2:33380737 chr1:72323940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EGF_CA|169-186|4.4^EGF_MSP1_1|172-186|9^TB|173-186|9^EGF|191-216|1.2e-05^hEGF|195-212|0.00082^FXa_inhibition|197-218|4.3^EGF_MSP1_1|206-212|1.9^EGF_CA|207-212|9^cEGF|207-212|1.2^EGF_3|207-215|0.52^Plasmod_Pvs28|207-218|4.5^Plasmod_Pvs28|363-378|9^EGF_CA|365-373|9^EGF|365-374|9^FXa_inhibition|367-376|9^hEGF|368-372|9^EGF|403-428|3.3e-07^hEGF|407-423|3.9e-05^FXa_inhibition|407-426|9^EGF_MSP1_1|416-425|4.9^EGF_3|417-427|0.21^EGF_CA|418-426|8^cEGF|418-423|0.51^Plasmod_Pvs28|418-426|9^TB|567-609|1.5e-11^cEGF|611-629|1.7e-05^hEGF|611-616|4.8^EGF_CA|612-617|9^EGF_MSP1_1|612-625|0.0048^EGF_CA|626-665|2.8e-11^Plasmod_Pvs28|629-657|4.3e-06^EGF|630-657|0.002^hEGF|636-656|0.00011^EGF_MSP1_1|636-656|0.0012^EGF_3|637-656|0.00021^FXa_inhibition|639-656|0.0034^cEGF|647-656|0.019^cEGF|680-689|1.2^TB|688-729|1.5e-19^EGF_CA|874-913|2.1e-07^EGF|877-905|2.5e-07^EGF_3|877-906|9.9e-05^FXa_inhibition|877-913|6.5e-08^Plasmod_Pvs28|883-914|0.00021^hEGF|887-904|0.1^EGF_MSP1_1|889-914|0.13^cEGF|896-918|4.3e-11^EGF_CA|915-955|4.3e-14^EGF|919-946|5.8e-06^EGF_3|919-947|4.4e-05^FXa_inhibition|919-955|1.2e-05^hEGF|926-946|1.5e-07^Plasmod_Pvs28|926-955|0.011^EGF_MSP1_1|932-956|0.023^cEGF|937-960|5.5e-10^EGF_CA|957-996|5.1e-11^EGF|964-988|0.23^Plasmod_Pvs28|966-990|0.21^FXa_inhibition|967-994|0.018^hEGF|968-982|0.41^EGF_MSP1_1|968-996|9^EGF_3|971-989|0.063^cEGF|979-1001|4.1e-05^EGF_CA-PARTIAL|998-1033~|2e-10^EGF_MSP1_1-PARTIAL|1001-1033~|0.048^Plasmod_Pvs28|1002-1029|0.075^EGF|1004-1031|0.14^hEGF|1008-1023|0.034^FXa_inhibition|1008-1030|0.01^EGF_3|1009-1031|0.004^cEGF-PARTIAL|1019-1033~|7.4e-05^TB-PARTIAL|1025-1033~|9 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr1] 6 3 6 0.51 ONLY_REF_SPLICE YES_LDAS 0.1069 GT 1.8892 AG 1.8062 ENST00000404816.7 1-1033 ENST00000357731.10 410-1065 chr2|+|[0]32947325-32947818[1]|[2]32948875-32948945[0]|[1]33020909-33021206[1]|[2]33110582-33110751[0]<==>chr1|-|[2]71407446-71407570[1]|[0]71592817-71592968[2]|[1]71611026-71611146[1]|[0]71698008-71698139[1]|[0]71776172-71776297[1] atggcgggggcctggctcaggtgggggctcctgctctgggcagggctcctcgcgtcctcggcgcacggccggctgcggaggatcacctacgtggtgcacccgggccccggcctggcagccggcgccttgcccctgagcgggcccccgcgttcgcggacattcaacgtcgcgctcaacgccaggtacagccgcagctcggcggctgccggcgcccccagccgtgcctcccccggggtcccctcggagaggacccggcgcacgagcaagccgggcggcgcggccctgcaggggctcagaccgccgccgccgccgccgccggagcctgcgcgtcccgcggtccccggcgggcagctccaccccaatcccggcggccacccggcagccgccccgttcaccaaacaaggcaggcaagttgtgcgctccaaggtgccgcaggagacccagagcggcggaggctctaggctgcaggttcaccagaagcagcagctgcagggggtcaatgtctgtggagggcggtgctgtcatggctggagtaaggcccctggctcccagaggtgcaccaaacctagctgtgttccgccatgtcagaatggagggatgtgtctccggccacaactctgtgtgtgtaaaccagggaccaagggcaaagcctgtgaaacaatagctgcccaggacacctcgtcaccagtctttggagggcagagtcctggggctgcttcctcgtggggccctcctgagcaagcagcaaagcatacttcatctaagaaggcagacactctaccaagagtcagccctgtggcccagatgaccttaaccctcaagccgaagccttcagtgggactcccccagcagatacattctcaagtgactcctctttcttcccagagtgtggtgattcaccatggccagacccaggaatacgtgctcaagcccaagtactttccagcccagaaggggatttcaggagagcagtccactgaaggttctttccctttaagatatgtgcaggatcaagttgcggcaccttttcagcTTCCTCCTAAGATATATGACATCTCAAATGATATGACCGTCAATGAAGGAACCAACGTCACTCTTACTTGTTTGGCCACTGGGAAACCAGAGCCTTCCATTTCTTGGCGACACATCTCCCCATCAGCAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAATTACAAGGGACCAGGCTGGGGAATATGAATGCAGTGCGGAAAATGATGTGTCATTCCCAGATGTGAGGAAAGTAAAAGTTGTTGTCAACTTTGCTCCTACTATTCAGGAAATTAAATCTGGCACCGTGACCCCCGGACGCAGTGGCCTGATAAGATGTGAAGGTGCAGGTGTGCCGCCTCCAGCCTTTGAATGGTACAAAGGAGAGAAGAAGCTCTTCAATGGCCAACAAGGAATTATTATTCAAAATTTTAGCACAAGATCCATTCTCACTGTTACCAACGTGACACAGGAGCACTTCGGCAATTATACCTGTGTGGCTGCCAACAAGCTAGGCACAACCAATGCGAGCCTGCCTCTTAACCCTCCAAGTACAGCCCAGTATGGAATTACCGGGAGCGCTGATGTTCTTTTCTCCTGCTGGTACCTTGTGTTGACACTGTCCTCTTTCACCAGCATATTCTACCTGAAGAATGCCATTCTACAATAA MAGAWLRWGLLLWAGLLASSAHGRLRRITYVVHPGPGLAAGALPLSGPPRSRTFNVALNARYSRSSAAAGAPSRASPGVPSERTRRTSKPGGAALQGLRPPPPPPPEPARPAVPGGQLHPNPGGHPAAAPFTKQGRQVVRSKVPQETQSGGGSRLQVHQKQQLQGVNVCGGRCCHGWSKAPGSQRCTKPSCVPPCQNGGMCLRPQLCVCKPGTKGKACETIAAQDTSSPVFGGQSPGAASSWGPPEQAAKHTSSKKADTLPRVSPVAQMTLTLKPKPSVGLPQQIHSQVTPLSSQSVVIHHGQTQEYVLKPKYFPAQKGISGEQSTEGSFPLRYVQDQVAAPFQLPPKIYDISNDMTVNEGTNVTLTCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVKVVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFSTRSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLTLSSFTSIFYLKNAILQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30058 BEND5::ZFP69B ENSG00000162373.13::ENSG00000187801.15 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 948 FALSE NA FALSE NA BEND5 ENSG00000162373.13 protein_coding - - chr1:48727519-48776969:- chr1:48758900:- chr1:49193191-49242641:- chr1:49224572:- ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:48740753,chr1:48740757 chr1:40450785,chr1:40450781 NA NA chr1:49206425,chr1:49206429 chr1:40916457,chr1:40916453 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LMBR1|56-234|1.1e-05^Sipho_Gp157|86-151|0.33^PIN_12|177-240|2.7e-05^DUF5917|181-229|0.00015^Exonuc_VII_L|182-238|9.4e-05^Sec8_N|183-231|5.4e-05^DUF6594|185-236|0.00052^Sipho_Gp157|186-235|0.00028^DUF6809|193-220|0.1^Docking|203-211|0.027^Docking|228-241|0.0025^BEN|323-400|1.1e-19^DUF6809|361-415|0.0015^LMBR1|365-408|1.4^Sipho_Gp157|372-416|0.19^DUF5917|385-396|6.5^PIN_12|388-402|4.4 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:8.26Mb] 5 2 5 1.67 ONLY_REF_SPLICE YES_LDAS 0.1095 GT 1.7465 AG 1.9329 ENST00000371833.4 1-745 ENST00000484445.5 128-396 chr1|-|[0]48758900-48759284[0]|[2]48761337-48761470[1]|[0]48776606-48776831[0]<==>chr1|+|[1]40456945-40457071[1]|[2]40457344-40457439[1]|[2]40462421-40462466[2] atgtacgcctttgtgcggttcctggaggacaacgtctgctacgcgctgcccgtgtcgtgcgtgcgcgacttcagcccccgctcgcggctggattttgacaaccagaaggtgtacgccgtgtaccggggcccggaggaattgggcgccgggcccgagagccccccgcgcgccccccgcgactggggcgcgctgttgctccacaaggcccagatcctggcgctggcagaagacaaatctgaccttgaaaacagtgtgatgcagaagaaaataaaaatccccaagctttctcttaatcatgtagaagaagatggagaggttaaagattatggggaagaagatttacagcttagacacatcaagagacctgaggggcggaagccgagcgaagtggcgcacaagagcatcgaggcagtggtggctcggctagagaagcagaacggcctgagcctgggccatagcacgtgtccggaagaggtcttcgtggaggcctcgccaggcacagaggacatggacagtctagaagatgctgtggtgccccgggctctgtatgaggagctgctgcgcaactaccagcagcaacaggaagagatgcgccacctccagcaggagctggagcggactcggaggcagctggtacaacaggccaagaagctcaaggagtacggggcacttgtgtctgaaatgaaggagctccgtgaccttaaccggaggctccaggacgtgctgctcctgcggcttggcagcgGAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGGGATGTCAGCTTTCCAAACCTGGCGTGATTTCCCAGTTGGAGAAAGGAGAAGAACCATGGCTGATGGAGAGAGATATTTCAGGAGTTCCAAGTTCAGACTTGAAGAGCAAAACAAAAACCAAAGAGTCAGCCTTACAGAATGA MYAFVRFLEDNVCYALPVSCVRDFSPRSRLDFDNQKVYAVYRGPEELGAGPESPPRAPRDWGALLLHKAQILALAEDKSDLENSVMQKKIKIPKLSLNHVEEDGEVKDYGEEDLQLRHIKRPEGRKPSEVAHKSIEAVVARLEKQNGLSLGHSTCPEEVFVEASPGTEDMDSLEDAVVPRALYEELLRNYQQQQEEMRHLQQELERTRRQLVQQAKKLKEYGALVSEMKELRDLNRRLQDVLLLRLGSGTVNLQGRICGLHSGGVGAAGPCSPESVPGGDAGELWEPGLSGMSAFQTWRDFPVGERRRTMADGERYFRSSKFRLEEQNKNQRVSLTE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30059 NAA40::MARK2 ENSG00000110583.13::ENSG00000072518.23 NCIH1836 SRR8615609 SRR8652041 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 951 FALSE NA FALSE NA NAA40 ENSG00000110583.13 protein_coding + + chr11:63938959-63957319:+ chr11:63947003:+ chr11:63706431-63724791:+ chr11:63714475:+ MARK2 ENSG00000072518.23 protein_coding + + chr11:63838928-63911020:+ chr11:63902604:+ chr11:63606400-63678492:+ chr11:63670076:+ chr11:63947562,chr11:63947563 chr11:63902372,chr11:63902370 NA NA chr11:63715034,chr11:63715035 chr11:63669844,chr11:63669842 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.03Mb];LOCAL_REARRANGEMENT:+:[27940] 5 6 5 6 ONLY_REF_SPLICE YES_LDAS 0.1806 GT 1.7465 AG 1.7819 ENST00000539656.5 1-155 ENST00000402010.8 1238-2367 chr11|+|[0]63939097-63939102[2]|[0]63945840-63945935[2]|[0]63946951-63947003[1]<==>chr11|+|[1]63902604-63902782[2]|[0]63903061-63903158[1]|[2]63903986-63904147[1]|[2]63904786-63905043[1]|[2]63906088-63906114[1]|[2]63908260-63908304[1]|[2]63908877-63909237[2] atggggagaaagtcaagcaaagccaaggagaagaagcagaagcggttggaggagcgagcagccatggatgccgtttgtgccaaagtggacgctgccaacaggcttggagaccctctggaggctttcccagtgttcaagaaatatgatagaaacggCTGGTCCTGCCATTCCCACCTCTAATTCTTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAGGACCGGGAGTCAGGGCGGAAAGCCAGCAGCACAGCCAAGGTGCCTGCCAGCCCCCTGCCCGGTCTGGAGAGGAAGAAGACCACCCCAACCCCCTCCACGAACAGCGTCCTCTCCACCAGCACAAATCGAAGCAGGAATTCCCCACTTTTGGAGCGGGCCAGCCTCGGCCAGGCCTCCATCCAGAATGGCAAAGACAGCCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCGGCCTCCGTGCACCCCAACAAGGCCTCTGGGCTGCCCCCCACGGAGAGTAACTGTGAGGTGCCGCGGCCCAGCACAGCCCCCCAGCGTGTCCCTGTTGCCTCCCCATCCGCCCACAACATCAGCAGCAGTGGTGGAGCCCCAGACCGAACTAACTTCCCCCGGGGTGTGTCCAGCCGAAGCACCTTCCATGCTGGGCAGCTCCGACAGGTGCGGGACCAGCAGAATTTGCCCTACGGTGTGACCCCAGCCTCTCCCTCTGGCCACAGCCAGGGCCGGCGGGGGGCCTCTGGGAGCATCTTCAGCAAGTTCACCTCCAAGTTTGTACGCAGAAATCTGTCTTTCAGGTTTGCCAGAAGGAACCTGAATGAACCTGAAAGCAAAGACCGAGTGGAGACGCTCAGACCTCACGTGGTGGGCAGTGGCGGCAACGACAAAGAAAAGGAAGAATTTCGGGAGGCCAAGCCCCGCTCCCTCCGCTTCACGTGGAGTATGAAGACCACGAGCTCCATGGAGCCCAACGAGATGATGCGGGAGATCCGCAAGGTGCTGGACGCGAACAGCTGCCAGAGCGAGCTGCATGAGAAGTACATGCTGCTGTGCATGCACGGCACGCCGGGCCACGAGGACTTCGTGCAGTGGGAGATGGAGGTGTGCAAACTGCCGCGGCTCTCTCTCAACGGGGTTCGATTTAAGCGGATATCGGGCACCTCCATGGCCTTCAAAAACATTGCCTCCAAAATAGCCAACGAGCTGAAGCTTTAA MGRKSSKAKEKKQKRLEERAAMDAVCAKVDAANRLGDPLEAFPVFKKYDRNGWSCHSHL*FLL*EDSE*QRRK*AA*GGPGVRAESQQHSQGACQPPARSGEEEDHPNPLHEQRPLHQHKSKQEFPTFGAGQPRPGLHPEWQRQPNHARVPGLHGFCFCRSLCGPAPPAPEIHVGLRAPQQGLWAAPHGE*L*GAAAQHSPPACPCCLPIRPQHQQQWWSPRPN*LPPGCVQPKHLPCWAAPTGAGPAEFALRCDPSLSLWPQPGPAGGLWEHLQQVHLQVCTQKSVFQVCQKEPE*T*KQRPSGDAQTSRGGQWRQRQRKGRISGGQAPLPPLHVEYEDHELHGAQRDDAGDPQGAGREQLPERAA*EVHAAVHARHAGPRGLRAVGDGGVQTAAALSQRGSI*ADIGHLHGLQKHCLQNSQRAEAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase MARK2 CAMK CAMKL MARK Q7KZI7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30063 PEX14::PGD ENSG00000142655.13::ENSG00000142657.21 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 955 FALSE NA FALSE NA PEX14 ENSG00000142655.13 protein_coding + + chr1:10472288-10630758:+ chr1:10495321:+ chr1:10532345-10690815:+ chr1:10555378:+ PGD ENSG00000142657.21 protein_coding + + chr1:10398592-10420511:+ chr1:10417376:+ chr1:10458649-10480568:+ chr1:10477433:+ chr1:10498665,chr1:10498664 chr1:10417219,chr1:10417215 NA NA chr1:10558722,chr1:10558721 chr1:10477276,chr1:10477272 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pex14_N|25-68|2.5e-20 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.05Mb];LOCAL_REARRANGEMENT:+:[52144] 346 21 346 21 ONLY_REF_SPLICE YES_LDAS 3.2767 GT 1.8323 AG 1.7968 ENST00000356607.9 1-84 ENST00000270776.13 976-1452 chr1|+|[0]10474967-10475002[2]|[0]10495274-10495321[2]<==>chr1|+|[0]10417376-10417509[1]|[2]10418826-10418925[2]|[0]10419417-10419539[2]|[0]10419630-10419749[2] atggcgtcctcggagcaggcagagcagccgagccagccaagctctactccaggaagtgaaaatgtgctgcctcgagagccgctgGCACTCTACGCTTCCAAGATCATCTCTTACGCTCAAGGCTTTATGCTGCTAAGGCAGGCAGCCACCGAGTTTGGCTGGACTCTCAATTATGGTGGCATCGCCCTGATGTGGAGAGGGGGCTGCATCATTAGAAGTGTATTCCTAGGAAAGATAAAGGATGCATTTGATCGAAACCCGGAACTTCAGAACCTCCTACTGGACGACTTCTTTAAGTCAGCTGTTGAAAACTGCCAGGACTCCTGGCGGCGGGCAGTCAGCACTGGGGTCCAGGCTGGCATTCCCATGCCCTGTTTTACCACTGCCCTCTCCTTCTATGACGGGTACAGACATGAGATGCTTCCAGCCAGCCTCATCCAGGCTCAGCGGGATTACTTCGGGGCTCACACCTATGAACTCTTGGCCAAACCAGGGCAGTTTATCCACACCAACTGGACAGGCCATGGTGGCACCGTGTCATCCTCGTCATACAATGCCTGA MASSEQAEQPSQPSSTPGSENVLPREPLALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSSSSYNA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30064 NFAT5::VPS4A ENSG00000102908.23::ENSG00000132612.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 956 TRUE 1663 TRUE 660 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69566374:+ chr16:69598997-69738569:+ chr16:69600277:+ VPS4A ENSG00000132612.16 protein_coding + + chr16:69311350-69326939:+ chr16:69316225:+ chr16:69345253-69360842:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none DUF815-PARTIAL|~134-229|2.2e-06^TIP49|151-212|1.8e-08^ATPase_2|157-187|0.0076^AAA_16|158-190|2.2e-06^TniB|160-182|0.055^ATPase|161-179|0.026^Parvo_NS1|161-183|0.00019^Guanylate_kin|161-194|0.0029^RuvB_N|162-247|2.7e-07^ResIII|162-213|0.00015^AAA_7|162-192|0.00022^AAA|163-293|1.5e-44^AAA_14|163-232|5.2e-08^AAA_22|163-193|1.7e-05^AAA_25|163-182|0.0016^AAA_5|163-231|2.7e-07^IstB_IS21|163-233|3.4e-07^AAA_18|163-200|4.5e-06^AAA_2|163-231|2.1e-05^AAA_33|163-205|1.9e-05^RNA_helicase|163-188|4.1e-05^nSTAND3|163-206|5.7e-05^AAA_24|163-232|8e-05^AAA_28|163-186|0.00017^Mg_chelatase|163-181|0.00016^NACHT|163-191|0.00075^bpMoxR|163-189|0.00033^AAA_30|164-205|0.00056^PhoH|165-186|9.2e-05^DUF5906|165-235|0.00057^AAA_17|166-212|1.7e-05^AAA_22|204-241|0.023^ATPase|204-257|0.0083^TniB|205-249|0.0033^AAA_25|208-247|0.00037^AAA_16|209-231|0.2^AAA_33|209-243|4^ATPase_2|211-237|0.12^EF-1_beta_acid|234-250|0.13^AAA_lid_3|316-355|9.1e-14^Vps4_C|374-434|6.2e-31^AAA_17|400-424|1.3 ["NFAT5:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.24Mb] 218 55 218 40.1 ONLY_REF_SPLICE YES_LDAS 2.3044 GT 1.8295 AG 1.8256 ENST00000393742.7 1-73 ENST00000254950.13 134-1314 chr16|+|[0]69566302-69566374[0]<==>chr16|+|[1]69316225-69316372[1]|[2]69318650-69318711[0]|[1]69318823-69318942[0]|[1]69319387-69319543[1]|[2]69320141-69320289[0]|[1]69320688-69320769[1]|[2]69321051-69321270[2]|[0]69322560-69322700[2]|[0]69324208-69324309[2] atgccctcggacttcatctcattgctcagcgcggacctagacctggaatcgcccaagtccctctactcgcgagATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGGCAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAAGAACAGCTGATGGGTGCCGTCGTGATGGAGAAGCCCAACATACGGTGGAACGACGTGGCCGGGCTGGAGGGGGCCAAGGAGGCCCTCAAAGAAGCTGTCATTTTGCCAATCAAATTCCCACACTTGTTCACAGGCAAGCGCACCCCCTGGCGGGGGATTCTGCTGTTCGGACCCCCTGGCACAGGGAAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCCTCAGATCTGATGTCCAAGTGGCTGGGGGAGAGTGAAAAGCTGGTCAAGAACCTGTTTGAGCTGGCCAGGCAGCACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCCCTCTGCGGGTCCCGAAATGAAAATGAGAGTGAGGCCGCCCGGAGGATCAAAACGGAGTTCTTGGTCCAGATGCAGGGGGTGGGGAATAACAATGATGGGACTCTGGTTCTTGGAGCCACAAACATCCCATGGGTGTTGGATTCGGCCATCAGGAGGAGGTTTGAAAAACGAATTTATATCCCCTTGCCGGAGGAAGCTGCCCGCGCCCAGATGTTCCGGTTGCATCTCGGGAGCACTCCCCACAACCTCACGGATGCAAACATCCACGAGCTGGCCCGGAAGACGGAAGGCTACTCGGGCGCGGACATCAGCATCATCGTGCGGGACTCTCTCATGCAGCCCGTGAGGAAGGTGCAGTCGGCCACACACTTCAAAAAGGTCTGTGGCCCCTCTCGCACCAACCCCAGCATGATGATTGATGACCTCCTGACTCCATGCTCACCAGGGGACCCAGGAGCCATGGAGATGACTTGGATGGATGTCCCTGGGGACAAACTCTTAGAGCCTGTGGTTTGCATGTCGGACATGCTGCGGTCTCTGGCCACCACCCGGCCCACGGTGAATGCAGACGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGGCAAGAGAGTTAA MPSDFISLLSADLDLESPKSLYSRDEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQES* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 69600277|69602451 TRUE|FALSE 69349911|69349911 FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30065 MYO10::BASP1-AS1 ENSG00000145555.15::ENSG00000215196.5 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1661 TRUE 658 MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16935788:- chr5:16662016-16936397:- chr5:16935897:- BASP1-AS1 ENSG00000215196.5 lncRNA - - chr5:17089296-17217047:- chr5:17090308:- chr5:17089405-17217156:- chr5:17090417:- chr5:16897029,chr5:16897035 chr5:17092617,chr5:17092620 NA NA chr5:16897138,chr5:16897144 chr5:17092726,chr5:17092729 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 211 95 211 74.52 ONLY_REF_SPLICE YES_LDAS 2.5492 GT 1.9329 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30066 ZNF486::RFXANK ENSG00000256229.8::ENSG00000064490.14 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 958 FALSE NA FALSE NA ZNF486 ENSG00000256229.8 protein_coding + + chr19:20167214-20200488:+ chr19:20197104:+ chr19:20278023-20311297:+ chr19:20307913:+ RFXANK ENSG00000064490.14 protein_coding + + chr19:19192229-19201869:+ chr19:19196966:+ chr19:19303038-19312678:+ chr19:19307775:+ chr19:20197450,chr19:20197616,chr19:20197786,chr19:20197366,chr19:20197448 chr19:19195087,chr19:19195085,chr19:19195094,chr19:19195087,chr19:19195083 NA NA chr19:20308259,chr19:20308425,chr19:20308595,chr19:20308175,chr19:20308257 chr19:19305896,chr19:19305894,chr19:19305903,chr19:19305896,chr19:19305892 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB|13-53|1.9e-25^zf_UBZ|89-94|0.8^TFIIS_C|113-122|4.5^C1_4|117-128|8.2^PDCD7|122-214|0.00022^zf-H2C2_2|147-160|1.2^TBPIP_C|152-184|0.076^zf_UBZ|155-161|7.7^Zn-ribbon_8|155-168|2.4^zf-C2H2|156-176|1.1^Desulfoferrod_N|156-164|0.47^Zn_ribbon_recom|156-162|6.8^zf-C2H2_4|167-176|4.8^zf-C2H2_jaz|168-173|9^zf-H2C2_2|169-193|2.2e-07^zf-C2H2|188-202|5.4^zf-C2H2_jaz|188-202|4.9^C1_4|196-220|0.037^zf-H2C2_2|199-221|1.6e-08^zf-RING_7|202-216|0.028^CPxCG_zf|202-222|0.14^DUF6076|204-219|0.081^zf-AN1|207-219|0.025^zf-HIT|207-217|0.055^zf-trcl|208-219|0.05^HVO_2753_ZBP|208-216|0.015^zf-C2H2|210-232|3e-09^zf-C2H2_4|210-232|5e-06^zf-C2H2_6|210-234|3.8e-06^zf_UBZ|210-222|0.0066^Zn-ribbon_8|210-221|0.0013^zf-C2H2_11|210-220|0.13^zf-C2H2_jaz|210-229|0.00037^Zn_ribbon_SprT|210-250|0.00088^TBPIP_C|210-231|0.0058^zf-met|210-228|0.0094^TFIIS_C|210-219|0.058^Desulfoferrod_N|210-217|0.028^XPA_N|211-223|0.0011^zf-C2HC_2|211-222|0.56^YhfH|211-220|0.029^C1_4|211-247|0.059^Zn_ribbon_recom|211-240|0.088^zf_C2H2_13|212-218|0.41^CPxCG_zf|212-250|0.018^zf-H2C2_2|224-249|3.3e-10^zf-RING_7|234-244|0.096^HVO_2753_ZBP|235-244|0.0089^zf-HIT|235-245|0.05^zf-trcl|236-250|0.028^zf-AN1|236-247|0.015^DUF6076|236-247|0.4^zf-C2H2|238-260|2.3e-07^zf-C2H2_4|238-260|3.6e-05^zf-C2H2_6|238-261|1.9e-06^zf_UBZ|238-249|0.0065^Zn-ribbon_8|238-273|0.00039^zf-C2H2_11|238-247|0.28^zf-C2H2_jaz|238-258|0.024^TBPIP_C|238-260|0.02^zf-met|238-256|0.43^TFIIS_C|238-248|0.023^Desulfoferrod_N|238-246|0.0069^XPA_N|239-247|0.028^YhfH|239-247|0.04^Zn_ribbon_recom|239-267|0.57^zf_C2H2_13|240-245|0.72^C1_4|240-288|0.16^zf-H2C2_2|254-275|1.5e-08^zf-RING_7|256-272|0.006^DUF6076|259-277|0.073^zf-trcl|264-277|0.012^zf-AN1|264-275|0.1^zf-HIT|264-273|0.17^HVO_2753_ZBP|265-276|2.6^zf-C2H2|266-288|5.5e-07^zf-C2H2_4|266-288|5.1e-05^zf-C2H2_6|266-288|6.1e-05^zf_UBZ|266-275|0.0091^zf-C2H2_jaz|266-275|0.15^Zn_ribbon_SprT|266-300|0.001^TBPIP_C|266-274|1.1^zf-met|266-284|0.35^Desulfoferrod_N|266-273|1.4^XPA_N|267-277|0.0028^zf_C2H2_13|267-273|0.087^Zn_ribbon_recom|267-301|0.2^zf-C2H2_11|268-277|1.3^YhfH|268-275|0.21^TFIIS_C|268-303|0.22^C1_4|268-304|0.14^zf-H2C2_2|281-305|1.6e-10^CPxCG_zf|281-311|0.083^zf-RING_7|287-299|1.6^DUF6076|287-303|0.051^zf-HIT|291-300|0.099^TBPIP_C|292-316|0.37^Desulfoferrod_N|292-299|0.92^zf-trcl|293-303|0.093^zf-AN1|293-303|0.069^zf-C2H2|294-316|1.3e-07^zf-C2H2_4|294-316|6.6e-05^zf-C2H2_6|294-316|0.00066^zf_UBZ|294-312|0.012^Zn-ribbon_8|294-329|0.0033^zf-C2H2_11|294-315|0.22^zf-C2H2_jaz|294-314|3.7e-05^Zn_ribbon_SprT|294-331|0.14^zf-met|294-314|0.00015^XPA_N|295-303|0.024^YhfH|295-301|3.6^C1_4|295-344|0.0075^Zn_ribbon_recom|295-326|0.46^zf-H2C2_2|309-332|1e-11^zf-RING_7|314-328|0.085^DUF6076|315-333|0.048^zf-HIT|319-329|0.005^zf-trcl|320-332|0.023^zf-AN1|320-331|0.024^HVO_2753_ZBP|321-356|0.00081^zf-C2H2|322-344|1.7e-06^zf-C2H2_4|322-344|4.9e-05^zf-C2H2_6|322-331|0.078^zf_UBZ|322-335|0.0009^Zn-ribbon_8|322-361|0.0015^zf-C2H2_jaz|322-342|0.018^TBPIP_C|322-344|0.17^zf-met|322-342|0.21^TFIIS_C|322-331|0.045^Desulfoferrod_N|322-329|1.4^XPA_N|323-335|0.001^zf-C2H2_11|323-343|0.0021^zf-C2HC_2|323-343|0.00054^YhfH|323-331|0.14^Zn_ribbon_recom|323-335|0.63^zf_C2H2_13|324-337|0.044^C1_4|324-373|0.0049^CPxCG_zf|324-362|0.0078^zf-H2C2_2|337-361|1.5e-12^zf-RING_7|342-356|0.012^DUF6076|343-359|0.022^zf-HIT|347-357|0.043^zf-trcl|348-360|0.03^zf-AN1|348-359|0.035^zf-C2H2|350-372|3.3e-09^zf-C2H2_4|350-372|6.1e-05^zf-C2H2_6|350-372|0.00012^zf_UBZ|350-360|0.0099^Zn-ribbon_8|350-385|8.7e-05^zf-C2H2_11|350-368|0.012^zf-C2H2_jaz|350-369|0.0064^Zn_ribbon_SprT|350-386|0.0069^TBPIP_C|350-368|0.037^zf-met|350-368|0.008^TFIIS_C|350-360|0.038^Desulfoferrod_N|350-357|0.028^XPA_N|351-362|0.00083^zf-C2HC_2|351-368|1.3^YhfH|351-359|0.06^Zn_ribbon_recom|351-363|0.026^zf_C2H2_13|352-357|0.53^C1_4-PARTIAL|352-394~|0.037^zf-H2C2_2|364-388|1.3e-11^CPxCG_zf|366-389|0.17^zf-RING_7|371-384|0.034^DUF6076|371-394|0.0056^zf-HIT|375-385|0.043^zf-trcl-PARTIAL|376-394~|4.2e-05^zf-AN1|376-387|0.043^HVO_2753_ZBP-PARTIAL|377-394~|0.051^zf-C2H2-PARTIAL|378-394~|1.7e-07^zf-C2H2_4-PARTIAL|378-394~|4.7e-05^zf-C2H2_6-PARTIAL|378-394~|0.00038^zf_UBZ|378-387|0.016^Zn-ribbon_8-PARTIAL|378-394~|0.00016^zf-C2H2_11-PARTIAL|378-394~|0.0014^zf-C2H2_jaz-PARTIAL|378-394~|0.053^TBPIP_C-PARTIAL|378-394~|0.012^zf-met|378-388|1.9^TFIIS_C|378-388|0.038^Desulfoferrod_N|378-385|0.028^XPA_N|379-390|0.0025^zf-C2HC_2|379-387|6.5^YhfH|379-387|0.082^Zn_ribbon_recom-PARTIAL|379-394~|0.024^zf_C2H2_13|380-385|0.53^C1_4-PARTIAL|380-394~|0.056^CPxCG_zf-PARTIAL|380-394~|0.14 Ank_2-PARTIAL|~191-218|6.7e-16^Ank_2-PARTIAL|~191-238|3.9e-11^Ank-PARTIAL|~191-216|1.7e-09^Ank_5-PARTIAL|~191-194|3.4e-08^Ank_5-PARTIAL|~191-230|2.5e-13^Ank_3-PARTIAL|~191-216|1.4e-07^Ank_4-PARTIAL|~191-210|7.6e-11^Ank_4|192-232|2.9e-07^Ank|223-238|0.027^Ank_3|223-244|0.0082 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.97Mb] 191 56 190.94 56 INCL_NON_REF_SPLICE YES_LDAS 2.2048 GT 1.5656 AG 1.8892 ENST00000335117.9 1-394 ENST00000303088.9 191-783 chr19|+|[0]20167331-20167360[2]|[0]20184356-20184482[0]|[1]20185987-20186082[0]|[1]20196964-20197104[0]<==>chr19|+|[1]19196966-19197046[0]|[1]19197186-19197251[0]|[1]19197521-19197621[2]|[0]19198107-19198232[2]|[0]19198657-19198723[0]|[1]19199154-19199234[0]|[1]19201649-19201719[2] atgccgggaccccttagaagcctagaaatggaatcattgcaatttagagatgtggctgtagaattctctctggaggagtggcattgcctggacactgcacagcagaatttatatagggatgtgatgttagagaactacagacacctggtcttccttggtattattgtctctaagccagacctgatcacctgtctggagcaaggaataaaacctctgactatgaagagacatgagatgattgccaaacccccagttgtgtgttctcattttgcccaagacctttggccagagcagagcataaaagattcttaccaaaaagtgatactgagaaaatttgaaaaatgtggacatggcaatttacactttaaaaaaggctgtgaaagtgtggatgagtGCAGCTCCCTGAAGCACTCCACCACTCTCACCAACCGGCAGCGAGGGAACGAGGTGTCAGCTCTGCCGGCCACCCTAGACTCCCTGTCCATCCACCAGCTCGCAGCACAGGGGGAGCTGGACCAGCTGAAGGAGCATTTGCGGAAAGGTGACAACCTCGTCAACAAGCCAGACGAGCGCGGCTTCACCCCCCTCATCTGGGCCTCCGCCTTTGGAGAGATTGAGACCGTTCGCTTCCTGCTGGAGTGGGGTGCCGACCCCCACATCCTGGCAAAAGAGCGAGAGAGCGCCCTGTCGCTGGCCAGCACAGGCGGCTACACAGACATTGTGGGGCTGCTGCTGGAGCGTGACGTGGACATCAACATCTATGATTGGAATGGAGGGACGCCACTGCTGTACGCTGTGCGCGGGAACCACGTGAAATGCGTTGAGGCCTTGCTGGCCCGAGGCGCTGACCTCACCACCGAAGCCGACTCTGGCTACACCCCGATGGACCTTGCCGTGGCCCTGGGATACCGGAAAGTGCAACAGGTGATCGAGAACCACATCCTCAAGCTCTTCCAGAGCAACCTGGTGCCCGCTGACCCTGAGTGA MPGPLRSLEMESLQFRDVAVEFSLEEWHCLDTAQQNLYRDVMLENYRHLVFLGIIVSKPDLITCLEQGIKPLTMKRHEMIAKPPVVCSHFAQDLWPEQSIKDSYQKVILRKFEKCGHGNLHFKKGCESVDECSSLKHSTTLTNRQRGNEVSALPATLDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADPE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30067 RUNX1::ENSG00000258053 ENSG00000159216.19::ENSG00000258053.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000258053 ENSG00000258053.1 lncRNA - - chr12:71047402-71118247:- chr12:71047679:- chr12:71441182-71512027:- chr12:71441459:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RUNX1:ArcherDX_panel","RUNX1:FoundationOne_panel","RUNX1:Oncogene"] 123 32 123 32 ONLY_REF_SPLICE YES_LDAS 1.3839 GT 1.6895 AG 1.2419 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30070 NFAT5::VPS4A ENSG00000102908.23::ENSG00000132612.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 957 TRUE 1663 TRUE 660 NFAT5 ENSG00000102908.23 protein_coding + + chr16:69565094-69704666:+ chr16:69568548:+ chr16:69598997-69738569:+ chr16:69602451:+ VPS4A ENSG00000132612.16 protein_coding + + chr16:69311350-69326939:+ chr16:69316225:+ chr16:69345253-69360842:+ chr16:69350128:+ chr16:69616985,chr16:69616986 chr16:69316077,chr16:69316075 NA NA chr16:69650888,chr16:69650889 chr16:69349980,chr16:69349978 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none DUF815-PARTIAL|~134-229|2.2e-06^TIP49|151-212|1.8e-08^ATPase_2|157-187|0.0076^AAA_16|158-190|2.2e-06^TniB|160-182|0.055^ATPase|161-179|0.026^Parvo_NS1|161-183|0.00019^Guanylate_kin|161-194|0.0029^RuvB_N|162-247|2.7e-07^ResIII|162-213|0.00015^AAA_7|162-192|0.00022^AAA|163-293|1.5e-44^AAA_14|163-232|5.2e-08^AAA_22|163-193|1.7e-05^AAA_25|163-182|0.0016^AAA_5|163-231|2.7e-07^IstB_IS21|163-233|3.4e-07^AAA_18|163-200|4.5e-06^AAA_2|163-231|2.1e-05^AAA_33|163-205|1.9e-05^RNA_helicase|163-188|4.1e-05^nSTAND3|163-206|5.7e-05^AAA_24|163-232|8e-05^AAA_28|163-186|0.00017^Mg_chelatase|163-181|0.00016^NACHT|163-191|0.00075^bpMoxR|163-189|0.00033^AAA_30|164-205|0.00056^PhoH|165-186|9.2e-05^DUF5906|165-235|0.00057^AAA_17|166-212|1.7e-05^AAA_22|204-241|0.023^ATPase|204-257|0.0083^TniB|205-249|0.0033^AAA_25|208-247|0.00037^AAA_16|209-231|0.2^AAA_33|209-243|4^ATPase_2|211-237|0.12^EF-1_beta_acid|234-250|0.13^AAA_lid_3|316-355|9.1e-14^Vps4_C|374-434|6.2e-31^AAA_17|400-424|1.3 ["NFAT5:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.24Mb] 65 71 65 30.9 ONLY_REF_SPLICE YES_LDAS 0.8562 GT 1.9329 AG 1.8256 ENST00000349945.7 1-127 ENST00000254950.13 134-1314 chr16|+|[0]69566302-69566374[0]|[1]69568495-69568548[0]<==>chr16|+|[1]69316225-69316372[1]|[2]69318650-69318711[0]|[1]69318823-69318942[0]|[1]69319387-69319543[1]|[2]69320141-69320289[0]|[1]69320688-69320769[1]|[2]69321051-69321270[2]|[0]69322560-69322700[2]|[0]69324208-69324309[2] atgccctcggacttcatctcattgctcagcgcggacctagacctggaatcgcccaagtccctctactcgcgagattctctgaagttacacccatcacagaattttcatagagctggactattggaagATGAGGCCCACAGCGACAAGGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCCGAGAAGCTGAAGGATTATTTACGAAGCAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAACCAGAGTGAGGGCAAGGGCAGTGACAGTGACAGTGAAGGGGATAATCCGGAGAAAAAGAAACTGCAAGAACAGCTGATGGGTGCCGTCGTGATGGAGAAGCCCAACATACGGTGGAACGACGTGGCCGGGCTGGAGGGGGCCAAGGAGGCCCTCAAAGAAGCTGTCATTTTGCCAATCAAATTCCCACACTTGTTCACAGGCAAGCGCACCCCCTGGCGGGGGATTCTGCTGTTCGGACCCCCTGGCACAGGGAAATCCTACCTGGCCAAAGCCGTGGCAACAGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCCTCAGATCTGATGTCCAAGTGGCTGGGGGAGAGTGAAAAGCTGGTCAAGAACCTGTTTGAGCTGGCCAGGCAGCACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCCCTCTGCGGGTCCCGAAATGAAAATGAGAGTGAGGCCGCCCGGAGGATCAAAACGGAGTTCTTGGTCCAGATGCAGGGGGTGGGGAATAACAATGATGGGACTCTGGTTCTTGGAGCCACAAACATCCCATGGGTGTTGGATTCGGCCATCAGGAGGAGGTTTGAAAAACGAATTTATATCCCCTTGCCGGAGGAAGCTGCCCGCGCCCAGATGTTCCGGTTGCATCTCGGGAGCACTCCCCACAACCTCACGGATGCAAACATCCACGAGCTGGCCCGGAAGACGGAAGGCTACTCGGGCGCGGACATCAGCATCATCGTGCGGGACTCTCTCATGCAGCCCGTGAGGAAGGTGCAGTCGGCCACACACTTCAAAAAGGTCTGTGGCCCCTCTCGCACCAACCCCAGCATGATGATTGATGACCTCCTGACTCCATGCTCACCAGGGGACCCAGGAGCCATGGAGATGACTTGGATGGATGTCCCTGGGGACAAACTCTTAGAGCCTGTGGTTTGCATGTCGGACATGCTGCGGTCTCTGGCCACCACCCGGCCCACGGTGAATGCAGACGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGGCAAGAGAGTTAA MPSDFISLLSADLDLESPKSLYSRDSLKLHPSQNFHRAGLLEDEAHSDKAKESIRAKCVQYLDRAEKLKDYLRSKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQES* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma COLON no_match 69600277|69602451 FALSE|TRUE 69349911|69349911 FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30071 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71046741:- chr12:71427902-71498306:- chr12:71440521:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RUNX1:ArcherDX_panel","RUNX1:FoundationOne_panel","RUNX1:Oncogene"] 60 21 60 17.75 ONLY_REF_SPLICE YES_LDAS 0.6942 GT 1.6895 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30072 MYO10::BASP1-AS1 ENSG00000145555.15::ENSG00000215196.5 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1661 TRUE 658 MYO10 ENSG00000145555.15 protein_coding - - chr5:16661907-16936288:- chr5:16916055:- chr5:16662016-16936397:- chr5:16916164:- BASP1-AS1 ENSG00000215196.5 lncRNA - - chr5:17089296-17217047:- chr5:17090308:- chr5:17089405-17217156:- chr5:17090417:- chr5:16897029,chr5:16897035 chr5:17092617,chr5:17092620 NA NA chr5:16897138,chr5:16897144 chr5:17092726,chr5:17092729 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 51 102 51 27.48 ONLY_REF_SPLICE YES_LDAS 0.7006 GT 1.9656 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30073 CHST11::TXNRD1 ENSG00000171310.11::ENSG00000198431.18 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 961 TRUE 1670 TRUE 666 CHST11 ENSG00000171310.11 protein_coding + + chr12:104455295-104762014:+ chr12:104457514:+ chr12:104849073-105155792:+ chr12:104851292:+ TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104251527:+ chr12:104609557-104744085:+ chr12:104645305:+ chr12:104546889,chr12:104546887 chr12:104228993,chr12:104228991 NA NA chr12:104940667,chr12:104940665 chr12:104622771,chr12:104622769 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Glutaredoxin-PARTIAL|~92-128|9.5e-10^NAD_binding_8|123-137|7.1^Thi4|155-210|1.4e-06^Pyr_redox_2|163-500|9.8e-58^FAD_binding_3|163-192|1.4e-05^FAD_binding_2|164-209|2.6e-09^HI0933_like|164-192|2.3e-07^FAD_oxidored|164-192|1.2e-07^DAO|164-267|3.7e-07^GIDA|164-216|3e-06^Lycopene_cycl|164-192|0.00023^Pyr_redox|165-192|0.00048^AlaDh_PNT_C|165-194|8.3e-06^NAD_binding_7|165-191|0.09^Pyr_redox_3|166-192|6.9e-05^NAD_binding_8|167-192|9.3e-07^Lycopene_cycl|236-252|3.8^Pyr_redox_3|298-483|1.5e-13^Glutaredoxin|333-340|9.1^AlaDh_PNT_C|340-369|0.0099^Pyr_redox|342-412|1.2e-20^NAD_binding_7|342-381|0.014^Thi4|343-373|0.72^FAD_binding_3|343-369|0.57^DAO|344-369|2.4^NAD_binding_8|345-368|1.4^HI0933_like|404-478|0.8^FAD_binding_2|456-486|1.3^Pyr_redox_dim|520-631|1.8e-32 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.10Mb] 27 10 27 7.5 ONLY_REF_SPLICE YES_LDAS 0.3081 GT 1.5301 AG 1.7819 ENST00000303694.6 1-103 ENST00000525566.6 92-1950 chr12|+|[0]104457412-104457514[0]<==>chr12|+|[1]104251527-104251678[2]|[0]104258019-104258079[0]|[1]104288931-104289040[2]|[0]104311290-104311412[2]|[0]104313245-104313317[0]|[1]104315777-104315896[0]|[1]104318913-104319055[2]|[0]104319470-104319585[1]|[2]104321091-104321316[2]|[0]104325337-104325429[2]|[0]104326347-104326423[1]|[2]104327515-104327671[2]|[0]104331534-104331641[2]|[0]104334237-104334332[2]|[0]104339139-104339273[2]|[0]104348353-104348421[2] atgaagccagcgctgctggaagtgatgaggatgaacagaatctgccggatggtgctggccacttgcttgggatcctttatcctggtcatcttctatttccaaaCTAAAGATCATCACCCTGGTAAAACTTTGCCAGAGAACCCAGCAGGATTCACCAGCACGGCCACTGCAGACTCCAGAGCCCTGCTTCAGGCCTATATAGATGGTCACTCTGTGGTCATCTTCAGTAGGTCCACATGCACACGCTGTACTGAGGTAAAGAAGTTATTTAAATCTCTGTGTGTTCCTTATTTTGTGCTTGAACTTGATCAAACAGAGGACGGTCGGGCCCTGGAAGGAACGCTCTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTGTGAAACAGAGAAAGATAGGCGGCCATGGTCCAACCTTGAAGGCTTATCAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAACGGCCCTGAAGATCTTCCCAAGTCCTATGACTATGACCTTATCATCATTGGAGGTGGCTCAGGAGGTCTGGCAGCTGCTAAGGAGGCAGCCCAATATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCCACCCCTCTTGGAACTAGATGGGGTCTCGGAGGAACATGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCATCAAGCAGCTTTGTTAGGACAAGCCCTGCAAGACTCTCGAAATTATGGATGGAAAGTCGAGGAGACAGTTAAGCATGATTGGGACAGAATGATAGAAGCTGTACAGAATCACATTGGCTCTTTGAATTGGGGCTACCGAGTAGCTCTGCGGGAGAAAAAAGTCGTCTATGAGAATGCTTATGGGCAATTTATTGGTCCTCACAGGATTAAGGCAACAAATAATAAAGGCAAAGAAAAAATTTATTCAGCAGAGAGATTTCTCATTGCCACTGGTGAAAGACCACGTTACTTGGGCATCCCTGGTGACAAAGAATACTGCATCAGCAGTGATGATCTTTTCTCCTTGCCTTACTGCCCGGGTAAGACCCTGGTTGTTGGAGCATCCTATGTCGCTTTGGAGTGCGCTGGATTTCTTGCTGGTATTGGTTTAGACGTCACTGTTATGGTTAGGTCCATTCTTCTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGTGAACACATGGAAGAACATGGCATCAAGTTTATAAGACAGTTCGTACCAATTAAAGTTGAACAAATTGAAGCAGGGACACCAGGCCGACTCAGAGTAGTAGCTCAGTCCACCAATAGTGAGGAAATCATTGAAGGAGAATATAATACGGTGATGCTGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAAGATAAATGAAAAGACTGGAAAAATACCTGTCACAGATGAAGAACAGACCAATGTGCCTTACATCTATGCCATTGGCGATATATTGGAGGATAAGGTGGAGCTCACCCCAGTTGCAATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTCTATGCAGGTTCCACTGTCAAGTGTGACTATGAAAATGTTCCAACCACTGTATTTACTCCTTTGGAATATGGTGCTTGTGGCCTTTCTGAGGAGAAAGCTGTGGAGAAGTTTGGGGAAGAAAATATTGAGGTTTACCATAGTTACTTTTGGCCATTGGAATGGACGATTCCGTCAAGAGATAACAACAAATGTTATGCAAAAATAATCTGTAATACTAAAGACAATGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTTGCAGCTGCGCTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCAGAGGTATTCACAACATTGTCTGTGACCAAGCGCTCTGGGGCAAGCATCCTCCAGGCTGGCTGCTGAGGTTAA MKPALLEVMRMNRICRMVLATCLGSFILVIFYFQTKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGC*G* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 104995769|104995769 FALSE|FALSE 104732917|104742131 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE carbohydrate sulfotransferase 11 2 B-CLL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30077 TXNRD1::LINC02385 ENSG00000198431.18::ENSG00000257193.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 954 TRUE 1659 FALSE NA TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104289040:+ chr12:104609557-104744085:+ chr12:104682818:+ LINC02385 ENSG00000257193.1 lncRNA + + chr12:104170395-104177659:+ chr12:104177517:+ chr12:104564173-104571437:+ chr12:104571295:+ chr12:104348459,chr12:104348458 chr12:104172803,chr12:104172799 NA NA chr12:104742237,chr12:104742236 chr12:104566581,chr12:104566577 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCGA_StarF2019","CCLE_StarF2019"] 16 3 16 0.23 ONLY_REF_SPLICE YES_LDAS 0.145 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30079 RUNX1::ENSG00000257454 ENSG00000159216.19::ENSG00000257454.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1668 TRUE 664 RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34880557:- chr21:36160098-37376965:- chr21:36252854:- ENSG00000257454 ENSG00000257454.1 lncRNA - - chr12:71034122-71104526:- chr12:71069359:- chr12:71427902-71498306:- chr12:71463139:- chr21:34870428,chr21:34870430 chr12:71085838,chr12:71085837 NA NA chr21:36242725,chr21:36242727 chr12:71479618,chr12:71479617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RUNX1:ArcherDX_panel","RUNX1:FoundationOne_panel","RUNX1:Oncogene"] 11 21 11 3.25 ONLY_REF_SPLICE YES_LDAS 0.1272 GT 1.6895 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30080 SCAMP4::ENSG00000267141 ENSG00000227500.11::ENSG00000267141.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1669 TRUE 665 SCAMP4 ENSG00000227500.11 protein_coding + + chr19:1905214-1926013:+ chr19:1918990:+ chr19:1905213-1926012:+ chr19:1918989:+ ENSG00000267141 ENSG00000267141.1 lncRNA + + chr19:1860250-1862019:+ chr19:1861769:+ chr19:1860249-1862018:+ chr19:1861768:+ chr19:1919120,chr19:1919220,chr19:1919103,chr19:1919111 chr19:1860544,chr19:1860544,chr19:1860525,chr19:1860533 NA NA chr19:1919119,chr19:1919219,chr19:1919102,chr19:1919110 chr19:1860543,chr19:1860543,chr19:1860524,chr19:1860532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SCAMP4:Oncogene"] 11 6 11 3.3 ONLY_REF_SPLICE YES_LDAS 0.1277 GT 1.3383 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30082 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69830152:+ chr2:70056792-70108516:+ chr2:70057284:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69781520:+ chr2:69871557-70054244:+ chr2:70008652:+ chr2:69835479,chr2:69835426,chr2:69835480 chr2:69721956,chr2:69721782,chr2:69721954 NA NA chr2:70062611,chr2:70062558,chr2:70062612 chr2:69949088,chr2:69948914,chr2:69949086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.00Mb];LOCAL_REARRANGEMENT:+:[3178] 11 7 11 6.52 ONLY_REF_SPLICE YES_LDAS 0.1564 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 TRUE|TRUE,TRUE|TRUE 70008652|70031665,70008652|70031665 TRUE|FALSE,TRUE|FALSE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30083 CHST11::TXNRD1 ENSG00000171310.11::ENSG00000198431.18 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 962 TRUE 1670 TRUE 666 CHST11 ENSG00000171310.11 protein_coding + + chr12:104455295-104762014:+ chr12:104457529:+ chr12:104849073-105155792:+ chr12:104851307:+ TXNRD1 ENSG00000198431.18 protein_coding + + chr12:104215779-104350307:+ chr12:104251527:+ chr12:104609557-104744085:+ chr12:104645305:+ chr12:104546889,chr12:104546887 chr12:104228993,chr12:104228991 NA NA chr12:104940667,chr12:104940665 chr12:104622771,chr12:104622769 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sulfotransfer_2-PARTIAL|108-118~|2.9e-81 Glutaredoxin-PARTIAL|~92-128|9.5e-10^NAD_binding_8|123-137|7.1^Thi4|155-210|1.4e-06^Pyr_redox_2|163-500|9.8e-58^FAD_binding_3|163-192|1.4e-05^FAD_binding_2|164-209|2.6e-09^HI0933_like|164-192|2.3e-07^FAD_oxidored|164-192|1.2e-07^DAO|164-267|3.7e-07^GIDA|164-216|3e-06^Lycopene_cycl|164-192|0.00023^Pyr_redox|165-192|0.00048^AlaDh_PNT_C|165-194|8.3e-06^NAD_binding_7|165-191|0.09^Pyr_redox_3|166-192|6.9e-05^NAD_binding_8|167-192|9.3e-07^Lycopene_cycl|236-252|3.8^Pyr_redox_3|298-483|1.5e-13^Glutaredoxin|333-340|9.1^AlaDh_PNT_C|340-369|0.0099^Pyr_redox|342-412|1.2e-20^NAD_binding_7|342-381|0.014^Thi4|343-373|0.72^FAD_binding_3|343-369|0.57^DAO|344-369|2.4^NAD_binding_8|345-368|1.4^HI0933_like|404-478|0.8^FAD_binding_2|456-486|1.3^Pyr_redox_dim|520-631|1.8e-32 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.10Mb] 9 10 9 2.5 ONLY_REF_SPLICE YES_LDAS 0.1027 GT 1.9899 AG 1.7819 ENST00000303694.6 1-118 ENST00000525566.6 92-1950 chr12|+|[0]104457412-104457529[0]<==>chr12|+|[1]104251527-104251678[2]|[0]104258019-104258079[0]|[1]104288931-104289040[2]|[0]104311290-104311412[2]|[0]104313245-104313317[0]|[1]104315777-104315896[0]|[1]104318913-104319055[2]|[0]104319470-104319585[1]|[2]104321091-104321316[2]|[0]104325337-104325429[2]|[0]104326347-104326423[1]|[2]104327515-104327671[2]|[0]104331534-104331641[2]|[0]104334237-104334332[2]|[0]104339139-104339273[2]|[0]104348353-104348421[2] atgaagccagcgctgctggaagtgatgaggatgaacagaatctgccggatggtgctggccacttgcttgggatcctttatcctggtcatcttctatttccaaagtatgttgcacccagCTAAAGATCATCACCCTGGTAAAACTTTGCCAGAGAACCCAGCAGGATTCACCAGCACGGCCACTGCAGACTCCAGAGCCCTGCTTCAGGCCTATATAGATGGTCACTCTGTGGTCATCTTCAGTAGGTCCACATGCACACGCTGTACTGAGGTAAAGAAGTTATTTAAATCTCTGTGTGTTCCTTATTTTGTGCTTGAACTTGATCAAACAGAGGACGGTCGGGCCCTGGAAGGAACGCTCTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTGTTTGTGAAACAGAGAAAGATAGGCGGCCATGGTCCAACCTTGAAGGCTTATCAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAACGGCCCTGAAGATCTTCCCAAGTCCTATGACTATGACCTTATCATCATTGGAGGTGGCTCAGGAGGTCTGGCAGCTGCTAAGGAGGCAGCCCAATATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCCACCCCTCTTGGAACTAGATGGGGTCTCGGAGGAACATGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCATCAAGCAGCTTTGTTAGGACAAGCCCTGCAAGACTCTCGAAATTATGGATGGAAAGTCGAGGAGACAGTTAAGCATGATTGGGACAGAATGATAGAAGCTGTACAGAATCACATTGGCTCTTTGAATTGGGGCTACCGAGTAGCTCTGCGGGAGAAAAAAGTCGTCTATGAGAATGCTTATGGGCAATTTATTGGTCCTCACAGGATTAAGGCAACAAATAATAAAGGCAAAGAAAAAATTTATTCAGCAGAGAGATTTCTCATTGCCACTGGTGAAAGACCACGTTACTTGGGCATCCCTGGTGACAAAGAATACTGCATCAGCAGTGATGATCTTTTCTCCTTGCCTTACTGCCCGGGTAAGACCCTGGTTGTTGGAGCATCCTATGTCGCTTTGGAGTGCGCTGGATTTCTTGCTGGTATTGGTTTAGACGTCACTGTTATGGTTAGGTCCATTCTTCTTAGAGGATTTGACCAGGACATGGCCAACAAAATTGGTGAACACATGGAAGAACATGGCATCAAGTTTATAAGACAGTTCGTACCAATTAAAGTTGAACAAATTGAAGCAGGGACACCAGGCCGACTCAGAGTAGTAGCTCAGTCCACCAATAGTGAGGAAATCATTGAAGGAGAATATAATACGGTGATGCTGGCAATAGGAAGAGATGCTTGCACAAGAAAAATTGGCTTAGAAACCGTAGGGGTGAAGATAAATGAAAAGACTGGAAAAATACCTGTCACAGATGAAGAACAGACCAATGTGCCTTACATCTATGCCATTGGCGATATATTGGAGGATAAGGTGGAGCTCACCCCAGTTGCAATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTCTATGCAGGTTCCACTGTCAAGTGTGACTATGAAAATGTTCCAACCACTGTATTTACTCCTTTGGAATATGGTGCTTGTGGCCTTTCTGAGGAGAAAGCTGTGGAGAAGTTTGGGGAAGAAAATATTGAGGTTTACCATAGTTACTTTTGGCCATTGGAATGGACGATTCCGTCAAGAGATAACAACAAATGTTATGCAAAAATAATCTGTAATACTAAAGACAATGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACACAAGGCTTTGCAGCTGCGCTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAATTGGAATCCACCCTGTCTGTGCAGAGGTATTCACAACATTGTCTGTGACCAAGCGCTCTGGGGCAAGCATCCTCCAGGCTGGCTGCTGAGGTTAA MKPALLEVMRMNRICRMVLATCLGSFILVIFYFQSMLHPAKDHHPGKTLPENPAGFTSTATADSRALLQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGC*G* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Head and Neck squamous cell carcinoma HEAD_AND_NECK no_match 104995769|104995769 FALSE|FALSE 104732917|104742131 FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA TRUE carbohydrate sulfotransferase 11 2 B-CLL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30084 SCAMP4::ENSG00000267141 ENSG00000227500.11::ENSG00000267141.1 NCIH1793 SRR8615611 SRR8652042 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1669 TRUE 665 SCAMP4 ENSG00000227500.11 protein_coding + + chr19:1905214-1926013:+ chr19:1918990:+ chr19:1905213-1926012:+ chr19:1918989:+ ENSG00000267141 ENSG00000267141.1 lncRNA + + chr19:1860250-1862019:+ chr19:1861474:+ chr19:1860249-1862018:+ chr19:1861473:+ chr19:1919120,chr19:1919220,chr19:1919103,chr19:1919111 chr19:1860544,chr19:1860544,chr19:1860525,chr19:1860533 NA NA chr19:1919119,chr19:1919219,chr19:1919102,chr19:1919110 chr19:1860543,chr19:1860543,chr19:1860524,chr19:1860532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SCAMP4:Oncogene"] 4 11 4 7.7 ONLY_REF_SPLICE YES_LDAS 0.1044 GT 1.3383 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30096 LINC03051::LSAMP ENSG00000239268.5::ENSG00000185565.13 COLO829 SRR8615617 SRR8639230 SKIN malignant_melanoma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA LINC03051 ENSG00000239268.5 lncRNA - - chr3:117672154-117997592:- chr3:117997182:- chr3:117391001-117716439:- chr3:117716029:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:116444955:- chr3:115521221-116858236:- chr3:116163802:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 7 19 7 ONLY_REF_SPLICE YES_LDAS 0.2255 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30098 CDC37::IL27RA ENSG00000105401.9::ENSG00000104998.4 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary star-fusion TRUE TRUE TRUE 966 FALSE NA FALSE NA CDC37 ENSG00000105401.9 protein_coding - - chr19:10391133-10420121:- chr19:10395021:- chr19:10501809-10530797:- chr19:10505697:- IL27RA ENSG00000104998.4 protein_coding + + chr19:14031762-14053218:+ chr19:14042453:+ chr19:14142574-14164030:+ chr19:14153265:+ chr19:10394013,chr19:10394017 chr19:14041349,chr19:14041345 NA NA chr19:10504689,chr19:10504693 chr19:14152161,chr19:14152157 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CDC37_N|1-109|7.2e-19^CATRA-C|32-106|1.2e-05^Med4|32-71|5.1e-06^E2F_CC-MB|39-65|0.029^T3SSipB|40-96|3.7e-05^NAPRTase_N|61-85|1.1^Med4|68-113|0.0051^E2F_CC-MB|78-111|0.0022^Med4|146-199|0.56^T3SSipB|177-211|1.5^CDC37_N|182-211|0.34^PBDC1|193-234|8.2e-05^NAPRTase_N|194-244|0.00018^CDC37_M|196-212|2.2^CDC37_M|218-320|2.6e-18^NAPRTase_N|280-311|1.2^PBDC1|293-312|0.48^CDC37_N|321-321|4.4 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:3.61Mb] 471 317 471 317 ONLY_REF_SPLICE YES_LDAS 8.6642 GT 1.8323 AG 1.8892 ENST00000593124.1 1-879 ENST00000263379.4 535-1911 chr19|-|[2]10395021-10395143[0]|[2]10395228-10395343[1]|[0]10395435-10395696[0]|[2]10395928-10396203[0]|[2]10403378-10403479[0]<==>chr19|+|[0]14042453-14042612[0]|[1]14042716-14042789[2]|[0]14046154-14046337[0]|[1]14046430-14046618[0]|[1]14048981-14049082[0]|[1]14049156-14049314[0]|[1]14050758-14050883[0]|[1]14051607-14051700[1]|[2]14051880-14051973[2]|[0]14052096-14052290[2] atggtggactacagcgtgtgggaccacattgaggtgtctgatgatgaagacgagacgcaccccaacatcgacacggccagtctcttccgctggcggcatcaggcccgggtggaacgcatggagcagttccagaaggagaaggaggaactggacaggggctgccgcgagtgcaagcgcaaggtggccgagtgccagaggaaactgaaggagctggaggtggccgagggcggcaaggcagagctggagcgcctgcaggccgaggcacagcagctgcgcaaggaggagcggagctgggagcagaagctggaggagatgcgcaagaaggagaagagcatgccctggaacgtggacacgctcagcaaagacggcttcagcaaggcccatgcccacgctcccgccaccttgatgctcatggcttcgtcaccacctccgccgtggatgggatgggcgctgcgaccacggcccgcccggccgcgctcgaggcgctccgcagccttgccccagcccactccccctctcaccctaccacagagcatggtaaataccaagcccgagaagacggaggaggactcagaggaggtgagggagcagaaacacaagaccttcgtggaaaaatacgagaaacagatcaagcactttggcatgcttcgccgctgggatgacagccaaaagtacctgtcagacaacgtccacctggtgtgcgaggagacagccaattacctggtcatttggtgcattgacctagaggtggaggagaaatgtgcactcatggagcaggtggcccaccagacaatcgtcatgcaatttatcctggagctggccaagagcctaaaggtggacccccgggcctgcttccggcagttcttcactaagattaagCTGGAACCGGAGCTGAAGACCATACCCCTGACCCCTGTTGAGATCCAAGATTTGGAGCTAGCCACTGGCTACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGCTCCAAAAGATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGAAGGCCCCAGGGCCCTGTGTGCAGGTGAGCTACAAAGTCTGGTTCTGGGTTGGAGGTCGTGAGCTGAGTCCAGAAGGAATTACCTGCTGCTGCTCCCTAATTCCCAGTGGGGCGGAGTGGGCCAGGGTGTCCGCTGTCAACGCCACAAGCTGGGAGCCTCTCACCAACCTCTCTTTGGTCTGCTTGGATTCAGCCTCTGCCCCCCGTAGCGTGGCAGTCAGCAGCATCGCTGGGAGCACGGAGCTACTGGTGACCTGGCAACCGGGGCCTGGGGAACCACTGGAGCATGTAGTGGACTGGGCTCGAGATGGGGACCCCCTGGAGAAACTCAACTGGGTCCGGCTTCCCCCTGGGAACCTCAGTGCTCTGTTACCAGGGAATTTCACTGTCGGGGTCCCCTATCGAATCACTGTGACCGCAGTCTCTGCTTCAGGCTTGGCCTCTGCATCCTCCGTCTGGGGGTTCAGGGAGGAATTAGCACCCCTAGTGGGGCCAACGCTTTGGCGACTCCAAGATGCCCCTCCAGGGACCCCCGCCATAGCGTGGGGAGAGGTCCCAAGGCACCAGCTTCGAGGCCACCTCACCCACTACACCTTGTGTGCACAGAGTGGAACCAGCCCCTCCGTCTGCATGAATGTGAGTGGCAACACACAGAGTGTCACCCTGCCTGACCTTCCTTGGGGTCCCTGTGAGCTGTGGGTGACAGCATCTACCATCGCTGGACAGGGCCCTCCTGGTCCCATCCTCCGGCTTCATCTACCAGATAACACCCTGAGGTGGAAAGTTCTGCCGGGCATCCTATTCTTGTGGGGCTTGTTCCTGTTGGGGTGTGGCCTGAGCCTGGCCACCTCTGGAAGGTGCTACCACCTAAGGCACAAAGTGCTGCCCCGCTGGGTCTGGGAGAAAGTTCCTGATCCTGCCAACAGCAGTTCAGGCCAGCCCCACATGGAGCAAGTACCTGAGGCCCAGCCCCTTGGGGACTTGCCCATCCTGGAAGTGGAGGAGATGGAGCCCCCGCCGGTTATGGAGTCCTCCCAGCCCGCCCAGGCCACCGCCCCGCTTGACTCTGGGTATGAGAAGCACTTCCTGCCCACACCTGAGGAGCTGGGCCTTCTGGGGCCCCCCAGGCCACAGGTTCTGGCCTGA MVDYSVWDHIEVSDDEDETHPNIDTASLFRWRHQARVERMEQFQKEKEELDRGCRECKRKVAECQRKLKELEVAEGGKAELERLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKAHAHAPATLMLMASSPPPPWMGWALRPRPARPRSRRSAALPQPTPPLTLPQSMVNTKPEKTEEDSEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALMEQVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKLEPELKTIPLTPVEIQDLELATGYKVYGRCRMEKEEDLWGEWSPILSFQTPPSAPKDVWVSGNLCGTPGGEEPLLLWKAPGPCVQVSYKVWFWVGGRELSPEGITCCCSLIPSGAEWARVSAVNATSWEPLTNLSLVCLDSASAPRSVAVSSIAGSTELLVTWQPGPGEPLEHVVDWARDGDPLEKLNWVRLPPGNLSALLPGNFTVGVPYRITVTAVSASGLASASSVWGFREELAPLVGPTLWRLQDAPPGTPAIAWGEVPRHQLRGHLTHYTLCAQSGTSPSVCMNVSGNTQSVTLPDLPWGPCELWVTASTIAGQGPPGPILRLHLPDNTLRWKVLPGILFLWGLFLLGCGLSLATSGRCYHLRHKVLPRWVWEKVPDPANSSSGQPHMEQVPEAQPLGDLPILEVEEMEPPPVMESSQPAQATAPLDSGYEKHFLPTPEELGLLGPPRPQVLA* FALSE TRUE hsa-mir-1181 chr19:10403458-10403538:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30099 TRPC4AP::ACSBG2 ENSG00000100991.12::ENSG00000130377.14 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary star-fusion TRUE TRUE TRUE 967 TRUE 1691 TRUE 669 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- ACSBG2 ENSG00000130377.14 protein_coding + + chr19:6135247-6193094:+ chr19:6190584:+ chr19:6135258-6193105:+ chr19:6190595:+ chr20:35025165,chr20:35025165,chr20:35025168 chr19:6190342,chr19:6190346,chr19:6190339 NA NA chr20:33612968,chr20:33612968,chr20:33612971 chr19:6190353,chr19:6190357,chr19:6190350 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3689|399-705|1.7e-135^Carm_PH|628-685|2.1e-05^Put_DNA-bind_N|695-711|0.00018 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr19] 243 300 243 222.73 ONLY_REF_SPLICE YES_LDAS 5.1207 GT 1.7465 AG 1.9219 ENST00000451813.6 1-1051 ENST00000588304.5 1778-1851 chr20|-|[0]35035123-35035308[1]|[0]35044505-35044712[0]|[2]35049866-35049994[0]|[2]35054976-35055031[1]|[0]35057514-35057571[0]|[2]35069296-35069412[0]|[2]35078046-35078174[0]|[2]35092614-35092781[0]<==>chr19|+|[1]6190584-6190657[2] atggcggcggcgccggtagcggctgggtctggagccggccgagggagacggtcggcagccacagtggcggcttggggcggatggggcggccggccgcggcctggtaacattctgctgcagctgcggcagggccagctgaccggccggggcctggtccgggcggtgcagttcactgagacttttttgacggagagggacaaacaatccaagtggagtggaattcctcagctgctcctcaagctgcacaccaccagccacctccacagtgactttgttgagtgtcaaaacatcctcaaggaaatttctcctcttctctccatggaggctatggcatttgttactgaagagaggaaacttacccaagaaaccacttatccaaatacttacatttttgacttgtttggaggtgttgatcttcttgtagaaattcttatgaggcctacgatctctatccggggacagaaactgaaaataagtgatgaaatgtccaaggactgcttgagtatcctgtataatacctgtgtctgtacagagggagttacaaagcgtttggcagaaaagaatgactttgtgatcttcctgtttacattgatgacaagtaagaagacattcttacaaacagcaaccctcattgaagatattttgggtgttaaaaaggaaatgatccgactagatgaagtccccaatctgagttccttagtatccaatttcgatcagcagcagctcgctaatttctgccggattctggctgtcaccatttcagagatggatacagggaatgatgacaagcacacgcttcttgccaaaaatgctcaacagaagaagagcttgagtttggggccttctgcagctgaaatcaatcaagcggcccttctcagcattcctggctttgttgagcggctttgcaaactggcgactcgaaaggtgtcagagtcaacgggcacagccagcttccttcaggagttggaagagtggtacacatggctagacaatgctttggtgctagatgccctgatgcgagtggccaatgaggagtcagagcacaatcaagGTCCAATGATGAAACTTAAGAGACATTTTGTAGCCCAGAAATACAAAAAACAAATTGATCACATGTACCACTGA MAAAPVAAGSGAGRGRRSAATVAAWGGWGGRPRPGNILLQLRQGQLTGRGLVRAVQFTETFLTERDKQSKWSGIPQLLLKLHTTSHLHSDFVECQNILKEISPLLSMEAMAFVTEERKLTQETTYPNTYIFDLFGGVDLLVEILMRPTISIRGQKLKISDEMSKDCLSILYNTCVCTEGVTKRLAEKNDFVIFLFTLMTSKKTFLQTATLIEDILGVKKEMIRLDEVPNLSSLVSNFDQQQLANFCRILAVTISEMDTGNDDKHTLLAKNAQQKKSLSLGPSAAEINQAALLSIPGFVERLCKLATRKVSESTGTASFLQELEEWYTWLDNALVLDALMRVANEESEHNQGPMMKLKRHFVAQKYKKQIDHMYH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30100 TRPC4AP::ACSBG2 ENSG00000100991.12::ENSG00000130377.14 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary star-fusion TRUE TRUE FALSE NA TRUE 1691 TRUE 669 TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- ACSBG2 ENSG00000130377.14 protein_coding + + chr19:6135247-6193094:+ chr19:6192668:+ chr19:6135258-6193105:+ chr19:6192679:+ chr20:35025165,chr20:35025165,chr20:35025168 chr19:6190342,chr19:6190346,chr19:6190339 NA NA chr20:33612968,chr20:33612968,chr20:33612971 chr19:6190353,chr19:6190357,chr19:6190350 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr19] 231 194 231 77.27 ONLY_REF_SPLICE YES_LDAS 3.3895 GT 1.7465 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30101 CATSPERD::ENSG00000276627 ENSG00000174898.16::ENSG00000276627.3 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CATSPERD ENSG00000174898.16 protein_coding + + chr19:5720637-5778734:+ chr19:5754245:+ chr19:5720648-5778745:+ chr19:5754256:+ ENSG00000276627 ENSG00000276627.3 lncRNA + + chr20:60755001-60767279:+ chr20:60767222:+ chr20:59330058-59342335:+ chr20:59342278:+ chr19:5755325,chr19:5755324 chr20:60767133,chr20:60767129 NA NA chr19:5755336,chr19:5755335 chr20:59342189,chr20:59342185 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 73 33 73 33 ONLY_REF_SPLICE YES_LDAS 1.1654 GT 1.7056 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30102 FREM1::MPDZ ENSG00000164946.20::ENSG00000107186.17 HEL9217 SRR8615628 SRR8639141 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M6) primary star-fusion TRUE TRUE TRUE 968 FALSE NA FALSE NA FREM1 ENSG00000164946.20 protein_coding - - chr9:14737152-14910995:- chr9:14841447:- chr9:14737150-14910993:- chr9:14841445:- MPDZ ENSG00000107186.17 protein_coding - - chr9:13105706-13279692:- chr9:13162795:- chr9:13105705-13279691:- chr9:13162794:- chr9:14830106,chr9:14830112 chr9:13166558,chr9:13166561 NA NA chr9:14830104,chr9:14830110 chr9:13166557,chr9:13166560 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cadherin_3|26-49|0.075^Frem_N|28-190|6.5e-30^Frem_N|230-262|1.9e-06^Cadherin_3|307-391|3e-11^Cadherin_3|397-502|4.7e-29^Big_9|402-481|0.003^Enas|419-440|0.0018^Cadherin_3|504-616|1.4e-23^Big_9|512-570|0.039^Frem_N|623-657|2.2^Cadherin_3|624-754|3.7e-12^Big_9|629-639|4^Cadherin_3|764-869|7.1e-23^Big_9|766-829|0.0028^Cadherin_3|872-984|7.6e-20^Big_9|878-940|0.0014^Cadherin_3|1012-1128|5.6e-19^Big_9|1013-1073|0.004^Enas|1030-1049|0.026^Big_9|1118-1129|0.6^Cadherin_3|1132-1256|4.2e-20^Big_9|1137-1195|0.0025^Big_9|1234-1257|0.016^Cadherin_3|1262-1328|8.9e-19^Big_9|1263-1325|0.34 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:1.46Mb] 73 56 73 56 ONLY_REF_SPLICE YES_LDAS 1.4183 GT 1.9656 AG 1.8892 ENST00000380875.7 1-1881 ENST00000546205.5 3297-6255 chr9|-|[2]14841447-14841589[1]|[0]14842316-14842660[1]|[0]14845960-14846091[1]|[0]14848665-14848773[0]|[2]14851284-14851607[0]|[2]14857553-14857749[1]|[0]14859183-14859484[2]|[1]14863809-14863903[0]|[2]14868744-14868977[0]<==>chr9|-|[2]13106965-13107111[0]|[2]13108936-13109059[2]|[1]13109952-13110064[0]|[2]13110636-13110740[0]|[2]13112024-13112146[0]|[2]13113011-13113054[1]|[0]13113931-13114021[0]|[2]13115248-13115334[0]|[2]13119502-13119649[2]|[1]13121739-13121932[0]|[2]13122087-13122170[0]|[2]13123153-13123298[1]|[0]13125216-13125390[0]|[2]13126516-13126590[0]|[2]13126680-13126772[0]|[2]13133824-13133904[0]|[2]13136092-13136182[2]|[1]13136712-13136803[0]|[2]13137957-13138153[1]|[0]13139987-13140149[0]|[2]13143466-13143564[0]|[2]13147548-13147658[0]|[2]13150511-13150688[2]|[1]13158018-13158110[2]|[1]13162691-13162795[2] atgaactctctgagttggggggctgcgaatgccgtgctgctgctgctcctcctggcctgggccagccccaccttcatcagcatcaaccgcggggtgagggtgatgaagggccactctgccttcctgtcaggagatgacctgaagtttgccatccctaaagagaaagatgcctgcaaagtggaagttgtgatgaatgagccaataacccagagggttgggaaactcactccacaggtctttgactgccatttccttcccaacgaagtcaagtatgttcacaatggttgtccaattcttgatgaagacacagtgaagctcagactttacagatttactgaaagagataccttcatagaaacttttatcctgtgggtctatctcctggaaccagactgtaacatcatccatatgagtaacaatgtgctggaggtgcctgaattcaatggcttgtcccaagcgattgataaaaatctgctcagattcgattatgataggatggctagcctggaatgtaccgtcagcctggacactgcgagaactcggctgccagcccatggccagatggttctcggggagcctcgaccagaagaacctcgtggagatcagccacacagttttttcccagagtcccaactgagagcaaaactgaagtgtccaggtgggagctgtaccccaggattaaagaaaataggaagcctcaaagtgagctgtgaggagttcctgctgatgggccttcgttatcagcatctggatcccccttcacccaacattgattatatctccatccaactggacctcacagataccaggagcaaaattgtgtacaagtcagagagtgcgtggctgcctgtctatatcagagctggaattccgaatcagattccaaaggctgcattcatggccgtgtttattctggaagtggatcagttcatcctgacctccttgactacatcagttctggactgtgaagaagatgagacccctaaacccttgctggtgttcaacattactaaagccccgctccagggctatgtgactcacctgttggatcacaccagaccaatctcctcattcacctggaaagatctcagtgacatgcagatcgcctatcagccaccaaacagcagccattctgagaggagacatgatgaggtagaattggaggtatacgacttcttctttgaaaggagtgcacctatgacagtccacatctccatcagaacagcagatacaaatgccccccgtgtatcctggaatacaggtctgagtctccttgaggggcagtctcgagccatcacttgggaacagtttcaggttgtcgacaatgacgacattggtgctgtccggctagtcaccgttggtggcctgcagcatggatggctgactttaagaggggggaaagggtttctcttcaccgtggctgacctccaggctggagttgttcgctatcatcatgatgacagcgactccaccaaagacttcgtggtcttccggatatttgatggccatcacagcatccgtcacaaattccccatcaacgtcttgcccaaagatgatagtcccccgttcctcataaccaatgttgtgattgaactggaggaggggcagaccatcctgatccagggatccatgctgcgagcttcagatgtggacgccagtgatgactacatcttcttcaatatcacaaagcctccacaggctggggagatcatgaagaagccagggccaggactgataggctatcctgtccatggcttccttcagagggatttgtttaatggaatcatttattatcgtcattttggtggagaaatctttgaagattcttttcaatttgtcctgtgggacagccatgaacctccaaatctttcagtgccacagAATTACTTATGTGCCTGCAGAACATTTGGAAGAGTTCAAAATAAGCTTGGGACAACAATCTGGAAGAGTAATGGCACTGGATATTTTTTCTTCATACACTGGCAGAGACATTCCAGAATTACCAGAGCGAGAAGAGGGAGAGGGTGAAGAAAGCGAACTTCAAAACACAGCATATAGCAATTGGAATCAGCCCAGGCGGGTGGAACTCTGGAGAGAACCAAGCAAATCCTTAGGCATCAGCATTGTTGGTGGACGAGGGATGGGGAGTCGGCTAAGCAATGGAGAAGTGATGAGGGGCATTTTCATCAAACATGTTCTGGAAGATAGTCCAGCTGGCAAAAATGGAACCTTGAAACCTGGAGATAGAATCGTAGAGGTGGATGGAATGGACCTCAGAGATGCAAGCCATGAACAAGCTGTGGAAGCCATTCGGAAAGCAGGCAACCCTGTAGTCTTTATGGTACAGAGCATTATAAACAGACCAAGGAAATCCCCTTTGCCTTCCTTGCTGCACAACCTTTACCCTAAGTACAACTTCAGCAGCACTAACCCATTTGCTGACTCTCTACAAATCAACGCCGACAAGGCACCCAGTCAGTCAGAGTCAGAGCCAGAGAAGGCTCCATTGTGCAGTGTGCCCCCACCCCCTCCTTCAGCCTTTGCCGAAATGGGTAGTGATCACACACAGTCATCTGCAAGCAAAATCTCACAAGATGTGGACAAAGAGGATGAGTTTGGTTACAGCTGGAAAAATATCAGAGAGCGTTATGGAACCCTAACAGGCGAGCTGCATATGATTGAACTGGAGAAAGGTCATAGTGGTTTGGGCCTAAGTCTTGCTGGGAACAAAGACCGATCCAGGATGAGTGTCTTCATAGTGGGGATTGATCCAAATGGAGCTGCAGGAAAAGATGGTCGATTGCAAATTGCAGATGAGCTTCTAGAGATCAATGGTCAGATTTTATATGGAAGAAGTCATCAGAATGCCTCATCAATCATTAAATGTGCCCCTTCTAAAGTGAAAATAATTTTTATCAGAAATAAAGATGCAGTGAATCAGATGGCCGTATGTCCTGGAAATGCAGTAGAACCTTTGCCTTCTAACTCAGAAAATCTTCAAAATAAGGAGACAGAGCCAACTGTTACTACTTCTGATGCAGCTGTGGACCTCAGTTCATTTAAAAATGTGCAACATCTGGAGCTTCCCAAGGATCAGGGGGGTTTGGGTATTGCTATCAGCGAAGAAGATACACTCAGTGGAGTCATCATAAAGAGCTTAACAGAGCATGGGGTAGCAGCCACGGATGGACGACTCAAAGTCGGAGATCAGATACTGGCTGTAGATGATGAAATTGTTGTTGGTTACCCTATTGAAAAGTTTATTAGCCTTCTGAAGACAGCAAAGATGACAGTAAAACTTACCATCCATGCTGAGAATCCAGATTCCCAGGCTGTTCCTTCAGCAGCTGGTGCAGCCAGTGGAGAAAAAAAGAACAGCTCCCAGTCTCTGATGGTCCCACAGTCTGGCTCCCCAGAACCGGAGTCCATCCGAAATACAAGCAGATCATCAACACCAGCAATTTTTGCTTCTGATCCTGCAACCTGCCCCATTATCCCTGGCTGCGAAACAACCATCGAGATTTCCAAAGGGCGAACAGGGCTGGGCCTGAGCATCGTTGGGGGTTCAGACACGCTGCTGGGTGCCATTATTATCCATGAAGTTTATGAAGAAGGAGCAGCATGTAAAGATGGAAGACTCTGGGCTGGAGATCAGATCTTAGAGGTGAATGGAATTGACTTGAGAAAGGCCACACATGATGAAGCAATCAATGTCCTGAGACAGACGCCACAGAGAGTGCGCCTGACACTCTACAGAGATGAGGCCCCATACAAAGAGGAGGAAGTGTGTGACACCCTCACTATTGAGCTGCAGAAGAAGCCGGGAAAAGGCCTAGGATTAAGTATTGTTGGTAAAAGAAACGATACTGGAGTATTTGTGTCAGACATTGTCAAAGGAGGAATTGCAGATGCCGATGGAAGACTGATGCAGGGAGACCAGATATTAATGGTGAATGGGGAAGACGTTCGTAATGCCACCCAAGAAGCGGTTGCCGCTTTGCTAAAGTGTTCCCTAGGCACAGTAACCTTGGAAGTTGGAAGAATCAAAGCTGGTCCATTCCATTCAGAGAGGAGGCCATCTCAAAGCAGCCAGGTGAGTGAAGGCAGCCTGTCATCTTTCACTTTTCCACTCTCTGGATCCAGTACATCTGAGTCACTGGAAAGTAGCTCAAAGAAGAATGCATTGGCATCTGAAATACAGGGATTAAGAACAGTCGAAATGAAAAAGGGCCCTACTGACTCACTGGGAATCAGCATCGCTGGAGGAGTAGGCAGCCCACTTGGTGATGTGCCTATATTTATTGCAATGATGCACCCAACTGGAGTTGCAGCACAGACCCAAAAACTCAGAGTTGGGGATAGGATTGTCACCATCTGTGGCACATCCACTGAGGGCATGACTCACACCCAAGCAGTTAACCTACTGAAAAATGCATCTGGCTCCATTGAAATGCAGGTGGTTGCTGGAGGAGACGTGAGTGTGGTCACAGGTCATCAGCAGGAGCCTGCAAGTTCCAGTCTTTCTTTCACTGGGCTGACGTCAAGCAGTATATTTCAGGATGATTTAGGACCTCCTCAATGTAAGTCTATTACACTAGAGCGAGGACCAGATGGCTTAGGCTTCAGTATAGTTGGAGGATATGGCAGCCCTCATGGAGACTTACCCATTTATGTTAAAACAGTGTTTGCAAAGGGAGCAGCCTCTGAAGACGGACGTCTGAAAAGGGGCGATCAGATCATTGCTGTCAATGGGCAGAGTCTAGAAGGAGTCACCCATGAAGAAGCTGTTGCCATCCTTAAACGGACAAAAGGCACTGTCACTTTGATGGTTCTCTCTTGA MNSLSWGAANAVLLLLLLAWASPTFISINRGVRVMKGHSAFLSGDDLKFAIPKEKDACKVEVVMNEPITQRVGKLTPQVFDCHFLPNEVKYVHNGCPILDEDTVKLRLYRFTERDTFIETFILWVYLLEPDCNIIHMSNNVLEVPEFNGLSQAIDKNLLRFDYDRMASLECTVSLDTARTRLPAHGQMVLGEPRPEEPRGDQPHSFFPESQLRAKLKCPGGSCTPGLKKIGSLKVSCEEFLLMGLRYQHLDPPSPNIDYISIQLDLTDTRSKIVYKSESAWLPVYIRAGIPNQIPKAAFMAVFILEVDQFILTSLTTSVLDCEEDETPKPLLVFNITKAPLQGYVTHLLDHTRPISSFTWKDLSDMQIAYQPPNSSHSERRHDEVELEVYDFFFERSAPMTVHISIRTADTNAPRVSWNTGLSLLEGQSRAITWEQFQVVDNDDIGAVRLVTVGGLQHGWLTLRGGKGFLFTVADLQAGVVRYHHDDSDSTKDFVVFRIFDGHHSIRHKFPINVLPKDDSPPFLITNVVIELEEGQTILIQGSMLRASDVDASDDYIFFNITKPPQAGEIMKKPGPGLIGYPVHGFLQRDLFNGIIYYRHFGGEIFEDSFQFVLWDSHEPPNLSVPQNYLCACRTFGRVQNKLGTTIWKSNGTGYFFFIHWQRHSRITRARRGRG*RKRTSKHSI*QLESAQAGGTLERTKQILRHQHCWWTRDGESAKQWRSDEGHFHQTCSGR*SSWQKWNLETWR*NRRGGWNGPQRCKP*TSCGSHSESRQPCSLYGTEHYKQTKEIPFAFLAAQPLP*VQLQQH*PIC*LSTNQRRQGTQSVRVRAREGSIVQCAPTPSFSLCRNG**SHTVICKQNLTRCGQRG*VWLQLEKYQRALWNPNRRAAYD*TGERS*WFGPKSCWEQRPIQDECLHSGD*SKWSCRKRWSIANCR*ASRDQWSDFIWKKSSECLINH*MCPF*SENNFYQK*RCSESDGRMSWKCSRTFAF*LRKSSK*GDRANCYYF*CSCGPQFI*KCATSGASQGSGGFGYCYQRRRYTQWSHHKELNRAWGSSHGWTTQSRRSDTGCR**NCCWLPY*KVY*PSEDSKDDSKTYHPC*ESRFPGCSFSSWCSQWRKKEQLPVSDGPTVWLPRTGVHPKYKQIINTSNFCF*SCNLPHYPWLRNNHRDFQRANRAGPEHRWGFRHAAGCHYYP*SL*RRSSM*RWKTLGWRSDLRGEWN*LEKGHT**SNQCPETDATESAPDTLQR*GPIQRGGSV*HPHY*AAEEAGKRPRIKYCW*KKRYWSICVRHCQRRNCRCRWKTDAGRPDINGEWGRRS*CHPRSGCRFAKVFPRHSNLGSWKNQSWSIPFREEAISKQPGE*RQPVIFHFSTLWIQYI*VTGK*LKEECIGI*NTGIKNSRNEKGPY*LTGNQHRWRSRQPTW*CAYIYCNDAPNWSCSTDPKTQSWG*DCHHLWHIH*GHDSHPSS*PTEKCIWLH*NAGGCWRRRECGHRSSAGACKFQSFFHWADVKQYISG*FRTSSM*VYYTRARTRWLRLQYSWRIWQPSWRLTHLC*NSVCKGSSL*RRTSEKGRSDHCCQWAESRRSHP*RSCCHP*TDKRHCHFDGSLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30121 MYO5C::SHC4 ENSG00000128833.13::ENSG00000185634.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 973 FALSE NA FALSE NA MYO5C ENSG00000128833.13 protein_coding - - chr15:52192322-52295804:- chr15:52295610:- chr15:52484519-52588001:- chr15:52587807:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48924949:- chr15:49115938-49256116:- chr15:49217146:- chr15:52284004,chr15:52284012,chr15:52284012 chr15:48946753,chr15:48946724,chr15:48946758 NA NA chr15:52576201,chr15:52576209,chr15:52576209 chr15:49238950,chr15:49238921,chr15:49238955 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Myosin_N-PARTIAL|12-27~|9.2e-08 SH2-PARTIAL|~586-597|1.3e-19 ["SHC4:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:3.23Mb] 365 299 365 299 ONLY_REF_SPLICE YES_LDAS 5.9301 GT 1.9329 AG 1.8323 ENST00000559459.5 1-27 ENST00000332408.9 586-1893 chr15|-|[2]52295610-52295636[0]<==>chr15|-|[2]48825971-48826126[0]|[2]48834769-48835022[1]|[0]48843409-48843588[1]|[0]48851188-48851248[0]|[2]48855953-48856124[2]|[1]48857692-48857815[1]|[0]48867818-48867869[0]|[2]48872089-48872142[0]|[2]48884248-48884367[0]|[2]48890748-48890811[2]|[1]48924879-48924949[0] atggcggtggccgagctgtacacgcagTACATGGGCTGTGTTGAAGTGCTGCAATCAATGAGATCACTGGATTTTGGAATGAGAACCCAAGTTACAAGGGAAGCAATAAGTCGCCTGTGTGAAGCTGTCCCCGGGGCAAATGGAGCCATTAAAAAGCGAAAGCCTCCAGTTAAGTTCCTATCAACAGTCCTTGGCAAAAGTAATCTTCAGTTTTCAGGAATGAATATAAAACTGACCATCTCAACATGCAGTCTCACATTGATGAATCTTGACAACCAACAGATTATTGCAAATCATCATATGCAGTCTATTTCATTTGCCTCTGGAGGGGATCCTGATACTACAGACTATGTTGCCTACGTAGCTAAAGATCCAGTTAATCAACGAGCCTGTCACATATTGGAATGCCACAATGGAATGGCCCAAGACGTCATAAGTACCATAGGGCAGGCTTTTGAACTCCGGTTTAAACAGTACTTGAAAAATCCTTCTTTGAATACTTCTTGTGAAAGTGAGGAGGTGCATATTGATAGCCATGCCGAGGAGAGAGAAGATCATGAATATTACAATGAAATTCCAGGGAAGCAGCCACCAGTAGGTGGTGTTTCAGATATGCGGATCAAAGTTCAAGCCACGGAACAAATGGCTTACTGCCCCATACAGTGTGAAAAGTTGTGCTATTTGCCTGGAAACTCCAAGTGCAGCAGTGTATATGAGAACTGTTTAGAACAAAGCAGGGCAATAGGTAATGTCCATCCAAGAGGGGTGCAGTCCCAGCGAGATACCTCATTATTGAAGCACACGTGCCGAGTGGATCTCTTTGATGACCCCTGCTACATTAATACACAGGCTCTTCAAAGTACACCTGGCTCTGCTGGAAATCAAAGGTCAGCCCAACCACTGGGGAGCCCATGGCACTGCGGAAAGGCACCAGAAACTGTTCAGCCGGGTGCCACAGCCCAGCCTGCCAGCTCACATTCTTTGCCACACATTAAGCAGCAGCTGTGGAGCGAAGAATGCTATCATGGCAAGCTGAGCAGGAAGGCGGCAGAGAGCCTCTTGGTAAAGGATGGGGACTTTTTGGTTCGAGAGAGTGCAACATCCCCTGGCCAATATGTGCTGAGTGGACTACAGGGAGGCCAAGCAAAACATCTTCTCCTGGTGGATCCTGAAGGCAAGGTGAGGACCAAGGATCATGTATTTGATAATGTCGGCCACCTTATCAGATACCATATGGATAACAGTTTGCCAATCATCTCCTCTGGAAGCGAAGTAAGCCTTAAACAACCAGTGAGAAAAGATAATAATCCAGCACTTTTGCATTCCAACAAATGA MAVAELYTQYMGCVEVLQSMRSLDFGMRTQVTREAISRLCEAVPGANGAIKKRKPPVKFLSTVLGKSNLQFSGMNIKLTISTCSLTLMNLDNQQIIANHHMQSISFASGGDPDTTDYVAYVAKDPVNQRACHILECHNGMAQDVISTIGQAFELRFKQYLKNPSLNTSCESEEVHIDSHAEEREDHEYYNEIPGKQPPVGGVSDMRIKVQATEQMAYCPIQCEKLCYLPGNSKCSSVYENCLEQSRAIGNVHPRGVQSQRDTSLLKHTCRVDLFDDPCYINTQALQSTPGSAGNQRSAQPLGSPWHCGKAPETVQPGATAQPASSHSLPHIKQQLWSEECYHGKLSRKAAESLLVKDGDFLVRESATSPGQYVLSGLQGGQAKHLLLVDPEGKVRTKDHVFDNVGHLIRYHMDNSLPIISSGSEVSLKQPVRKDNNPALLHSNK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30123 B9D1::CD82 ENSG00000108641.20::ENSG00000085117.12 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 975 FALSE NA FALSE NA B9D1 ENSG00000108641.20 protein_coding - - chr17:19334308-19378193:- chr17:19343790:- chr17:19237621-19281506:- chr17:19247103:- CD82 ENSG00000085117.12 protein_coding + + chr11:44564427-44620358:+ chr11:44600158:+ chr11:44585977-44641908:+ chr11:44621708:+ chr17:19340337,chr17:19340341 chr11:44594654,chr11:44594650 NA NA chr17:19243650,chr17:19243654 chr11:44616204,chr11:44616200 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Tetraspanin-PARTIAL|~64-255|1.9e-63 ["CD82:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr11] 65 24 65 24 ONLY_REF_SPLICE YES_LDAS 0.7948 GT 1.6402 AG 1.8892 ENST00000674596.1 1-297 ENST00000227155.9 64-804 chr17|-|[2]19343790-19343857[1]|[0]19347269-19347331[1]|[0]19347784-19347880[0]|[2]19357840-19357908[0]<==>chr11|+|[0]44600158-44600230[0]|[1]44605058-44605182[2]|[0]44605355-44605429[2]|[0]44615272-44615373[2]|[0]44618162-44618365[2]|[0]44618640-44618723[2]|[0]44619049-44619126[2] atgtgcggcaagcactggtgtggaacttccccattgatgtcacctttaaaagcaccaacccctacggctggccacagatcgtgctcagcgtgtatggaccagatgtgttcgggaacgatgtggttcgaggctatggggccgtgcacgtgcccttctcacctggccggcacaaaaggaccatccccatgtttgtcccagaatctacgtctaaactgcagaagtttacaagctggttcatggggcggcggcccgagtacacagaccccaaggtggtggctcagggtgaaggccgggaagATCCTGGGCGCAGTGATCCTGGGCTTCGGGGTGTGGATCCTGGCCGACAAGAGCAGTTTCATCTCTGTCCTGCAAACCTCCTCCAGCTCGCTTAGGATGGGGGCCTATGTCTTCATCGGCGTGGGGGCAGTCACTATGCTCATGGGCTTCCTGGGCTGCATCGGCGCCGTCAACGAGGTCCGCTGCCTGCTGGGGCTGTACTTTGCTTTCCTGCTCCTGATCCTCATTGCCCAGGTGACGGCCGGGGCCCTCTTCTACTTCAACATGGGCAAGCTGAAGCAGGAGATGGGCGGCATCGTGACTGAGCTCATTCGAGACTACAACAGCAGTCGCGAGGACAGCCTGCAGGATGCCTGGGACTACGTGCAGGCTCAGGTGAAGTGCTGCGGCTGGGTCAGCTTCTACAACTGGACAGACAACGCTGAGCTCATGAATCGCCCTGAGGTCACCTACCCCTGTTCCTGCGAAGTCAAGGGGGAAGAGGACAACAGCCTTTCTGTGAGGAAGGGCTTCTGCGAGGCCCCCGGCAACAGGACCCAGAGTGGCAACCACCCTGAGGACTGGCCTGTGTACCAGGAGGGCTGCATGGAGAAGGTGCAGGCGTGGCTGCAGGAGAACCTGGGCATCATCCTCGGCGTGGGCGTGGGTGTGGCCATCATCGAGCTCCTGGGGATGGTCCTGTCCATCTGCTTGTGCCGGCACGTCCATTCCGAAGACTACAGCAAGGTCCCCAAGTACTGA MCGKHWCGTSPLMSPLKAPTPTAGHRSCSACMDQMCSGTMWFEAMGPCTCPSHLAGTKGPSPCLSQNLRLNCRSLQAGSWGGGPSTQTPRWWLRVKAGKILGAVILGFGVWILADKSSFISVLQTSSSSLRMGAYVFIGVGAVTMLMGFLGCIGAVNEVRCLLGLYFAFLLLILIAQVTAGALFYFNMGKLKQEMGGIVTELIRDYNSSREDSLQDAWDYVQAQVKCCGWVSFYNWTDNAELMNRPEVTYPCSCEVKGEEDNSLSVRKGFCEAPGNRTQSGNHPEDWPVYQEGCMEKVQAWLQENLGIILGVGVGVAIIELLGMVLSICLCRHVHSEDYSKVPKY* FALSE TRUE hsa-mir-1180 chr17:19344506-19344574:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30124 FANCA::CDK10 ENSG00000187741.16::ENSG00000185324.22 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 974 TRUE 1710 TRUE 675 FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89758577:- chr16:89793091-89883385:- chr16:89824985:- CDK10 ENSG00000185324.22 protein_coding + + chr16:89680737-89696354:+ chr16:89689252:+ chr16:89747145-89762762:+ chr16:89755660:+ chr16:89757992 chr16:89687413 NA NA chr16:89824400 chr16:89753821 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Fanconi_A_N|170-524|3.7e-172^Fanconi_A|1254-1316|7.8e-35 none ["FANCA:Oncogene","FANCA:FoundationOne_panel","FANCA:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.04Mb];LOCAL_INVERSION:-:+:[41185] 59 56 59 50.83 ONLY_REF_SPLICE YES_LDAS 0.9809 GT 1.9656 AG 1.7968 ENST00000564475.6 1-2981 ENST00000511415.5 150-171 chr16|-|[1]89758577-89758705[2]|[1]89761949-89762022[0]|[2]89764890-89765066[0]|[2]89767141-89767237[2]|[1]89769837-89770024[0]|[2]89770166-89770259[2]|[1]89770564-89770634[0]|[2]89771678-89771814[1]|[0]89773271-89773384[1]|[0]89775742-89775815[2]|[1]89778801-89778850[0]|[2]89778943-89779003[2]|[1]89779869-89779957[0]|[2]89782859-89782918[0]|[2]89783007-89783102[0]|[2]89784854-89784964[0]|[2]89791403-89791536[1]|[0]89791927-89792068[0]|[2]89792471-89792547[1]|[0]89795906-89796018[2]|[1]89799166-89799232[1]|[0]89799605-89799638[0]|[2]89803259-89803341[1]|[0]89805280-89805392[2]|[1]89808294-89808367[0]|[2]89810707-89810802[0]|[2]89810929-89811071[1]|[0]89814520-89814613[0]|[2]89815877-89815986[1]|[0]89816537-89816615[0]<==>chr16|+|[2]89689252-89689273[2] atgtccgactcgtgggtcccgaactccgcctcgggccaggacccagggggccgccggagggcctgggccgagctgctggcgggaagggtcaagagggaaaaatataatcctgaaagggcacagaaattaaaggaatcagctgtgcgcctcctgcgaagccatcaggacctgaatgcccttttgcttgaggtagaaggtccactgtgtaaaaaattgtctctcagcaaagtgattgactgtgacagttctgaggcctatgctaatcattctagttcatttataggctctgctttgcaggatcaagcctcaaggctgggggttcccgtgggtattctctcagccgggatggttgcctctagcgtgggacagatctgcacggctccagcggagaccagtcaccctgtgctgctgactgtggagcagagaaagaagctgtcttccctgttagagtttgctcagtatttattggcacacagtatgttctcccgtctttccttctgtcaagaattatggaaaatacagagttctttgttgcttgaagcggtgtggcatcttcacgtacaaggcattgtgagcctgcaagagctgctggaaagccatcccgacatgcatgctgtgggatcgtggctcttcaggaatctgtgctgcctttgtgaacagatggaagcatcctgccagcatgctgacgtcgccagggccatgctttctgattttgttcaaatgtttgttttgaggggatttcagaaaaactcagatctgagaagaactgtggagcctgaaaaaatgccgcaggtcacggttgatgtactgcagagaatgctgatttttgcacttgacgctttggctgctggagtacaggaggagtcctccactcacaagatcgtgaggtgctggttcggagtgttcagtggacacacgcttggcagtgtaatttccacagatcctctgaagaggttcttcagtcataccctgactcagatactcactcacagccctgtgctgaaagcatctgatgctgttcagatgcagagagagtggagctttgcgcggacacaccctctgctcacctcactgtaccgcaggctctttgtgatgctgagtgcagaggagttggttggccatttgcaagaagttctggaaacgcaggaggttcactggcagagagtgctctcctttgtgtctgccctggttgtctgctttccagaagcgcagcagctgcttgaagactgggtggcgcgtttgatggcccaggcattcgagagctgccagctggacagcatggtcactgcgttcctggttgtgcgccaggcagcactggagggcccctctgcgttcctgtcatatgcagactggttcaaggcctcctttgggagcacacgaggctaccatggctgcagcaagaaggccctggtcttcctgtttacgttcttgtcagaactcgtgccttttgagtctccccggtacctgcaggtgcacattctccacccacccctggttcccggcaagtaccgctccctcctcacagactacatctcattggccaagacacggctggccgacctcaaggtttctatagaaaacatgggactctacgaggatttgtcatcagctggggacattactgagccccacagccaagctcttcaggatgttgaaaaggccatcatggtgtttgagcatacggggaacatcccagtcaccgtcatggaggccagcatattcaggaggccttactacgtgtcccacttcctccccgccctgctcacacctcgagtgctccccaaagtccctgactcccgtgtggcgtttatagagtctctgaagagagcagataaaatccccccatctctgtactccacctactgccaggcctgctctgctgctgaagagaagccagaagatgcagccctgggagtgagggcagaacccaactctgctgaggagcccctgggacagctcacagctgcactgggagagctgagagcctccatgacagaccccagccagcgtgatgttatatcggcacaggtggcagtgatttctgaaagactgagggctgtcctgggccacaatgaggatgacagcagcgttgagatatcaaagattcagctcagcatcaacacgccgagactggagccacgggaacacatggctgtggacctcctgctgacgtctttctgtcagaacctgatggctgcctccagtgtcgctcccccggagaggcagggtccctgggctgccctcttcgtgaggaccatgtgtggacgtgtgctccctgcagtgctcacccggctctgccagctgctccgtcaccagggcccgagcctgagtgccccacatgtgctggggttggctgccctggccgtgcacctgggtgagtccaggtctgcgctcccagaggtggatgtgggtcctcctgcacctggtgctggccttcctgtccctgcgctctttgacagcctcctgacctgtaggacgagggattccttgttcttctgcctgaaattttgtacagcagcaatttcttactctctctgcaagttttcttcccagtcacgagatactttgtgcagctgcttatctccaggccttattaaaaagtttcagttcctcatgttcagattgttctcagaggcccgacagcctctttctgaggaggacgtagccagcctttcctggagacccttgcaccttccttctgcagactggcagagagctgccctctctctctggacacacagaaccttccgagaggtgttgaaagaggaagatgttcacttaacttaccaagactggttacacctggagctggaaattcaacctgaagctgatgctctttcagatactgaacggcaggacttccaccagtgggcgatccatgagcactttctccctgagtcctcggcttcagggggctgtgacggagacctgcaggctgcgtgtaccattcttgtcaacgcactgatggatttccaccaaagCTGGGACGATGCCGGAGTGTGA MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNALLLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASSVGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLEAVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQMFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFGVFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYRRLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFESCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSELVPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVSIENMGLYEDLSSAGDITEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSRVAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGELRASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVDLLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPHVLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPSADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIHEHFLPESSASGGCDGDLQAACTILVNALMDFHQSWDDAGV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Cyclin-dependent kinase 10 CMGC CDK CDK10 Q15131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 30125 TANC1::PKP4 ENSG00000115183.15::ENSG00000144283.23 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 977 FALSE NA FALSE NA TANC1 ENSG00000115183.15 protein_coding + + chr2:158968640-159232659:+ chr2:159065971:+ chr2:159825152-160089170:+ chr2:159922483:+ PKP4 ENSG00000144283.23 protein_coding + + chr2:158456952-158682879:+ chr2:158631753:+ chr2:159313464-159539391:+ chr2:159488265:+ chr2:159091330,chr2:159091327 chr2:158624793,chr2:158624787 NA NA chr2:159947842,chr2:159947839 chr2:159481305,chr2:159481299 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr2:0.29Mb] 48 11 48 11 ONLY_REF_SPLICE YES_LDAS 0.5269 GT 1.4295 AG 1.9329 ENST00000263635.8 1-61 ENST00000389759.8 1154-3579 chr2|+|[0]159065911-159065971[0]<==>chr2|+|[1]158631753-158631941[0]|[1]158634070-158634289[1]|[2]158640627-158640759[2]|[0]158642486-158642699[0]|[1]158658131-158658314[1]|[2]158661333-158661450[2]|[0]158662897-158663088[2]|[0]158663272-158663445[2]|[0]158666413-158666563[0]|[1]158669720-158669915[1]|[2]158673677-158673761[2]|[0]158673883-158674000[0]|[1]158676739-158676867[0]|[1]158678581-158678654[2]|[0]158680429-158680677[2] atgttaaaggctgtgctgaagaagagccgagagggaggaaagggaggcaagaaggaagcagGCTTACGGAGTTCCTATGCTAGTCAGCATAGTCAGCTTGGGCAAGACCTTCGTTCTGCCGTGTCTCCCGACTTGCACATTACTCCTATATATGAGGGGAGGACCTATTACAGCCCAGTGTACCGCAGCCCAAACCATGGAACTGTGGAGCTCCAAGGATCGCAGACGGCGTTGTATCGCACAGGTTCAGTAGGTATTGGAAATCTACAAAGGACATCCAGCCAACGAAGTACCCTTACATACCAAAGAAATAATTATGCTCTGAACACAACAGCTACCTACGCGGAGCCCTACAGGCCTATACAATACCGAGTGCAAGAGTGCAATTATAACAGGCTTCAGCATGCAGTGCCGGCTGATGATGGCACCACAAGATCCCCATCAATAGACAGCATTCAGAAGGACCCCAGGGAGTTTGCCTGGCGTGATCCTGAGTTGCCTGAGGTCATTCACATGCTTCAGCACCAGTTCCCATCTGTTCAGGCAAATGCAGCGGCCTACCTGCAGCACCTGTGCTTTGGTGACAACAAAGTGAAGATGGAGGTGTGTAGGTTAGGGGGAATCAAGCATCTGGTTGACCTTCTGGACCACAGAGTTTTGGAAGTTCAGAAGAATGCTTGTGGTGCCCTTCGAAACCTCGTTTTTGGCAAGTCTACAGATGAAAATAAAATAGCAATGAAGAATGTTGGTGGGATACCTGCCTTGTTGCGACTGTTGAGAAAATCTATTGATGCAGAAGTAAGGGAGCTTGTTACAGGAGTTCTTTGGAATTTATCCTCATGTGATGCTGTAAAAATGACAATCATTCGAGATGCTCTCTCAACCTTAACAAACACTGTGATTGTTCCACATTCTGGATGGAATAACTCTTCTTTTGATGATGATCATAAAATTAAATTTCAGACTTCACTAGTTCTGCGTAACACGACAGGTTGCCTAAGGAACCTCAGCTCCGCGGGGGAAGAAGCTCGGAAGCAAATGCGGTCCTGCGAGGGGCTGGTAGACTCACTGTTGTATGTGATCCACACGTGTGTGAACACATCCGATTACGACAGCAAGACGGTGGAGAACTGCGTGTGCACCCTGAGGAACCTGTCCTATCGGCTGGAGCTGGAGGTGCCCCAGGCCCGGTTACTGGGACTGAACGAATTGGATGACTTACTAGGAAAAGAGTCTCCCAGCAAAGACTCTGAGCCAAGTTGCTGGGGGAAGAAGAAGAAAAAGAAAAAGAGGACTCCGCAAGAAGATCAATGGGATGGAGTTGGTCCTATCCCAGGACTGTCGAAGTCCCCCAAAGGGGTTGAGATGCTGTGGCACCCATCGGTGGTAAAACCATATCTGACTCTTCTAGCAGAAAGTTCCAACCCAGCCACCTTGGAAGGCTCTGCAGGGTCTCTCCAGAACCTCTCTGCTGGCAACTGGAAGTTTGCAGCATATATCCGGGCGGCCGTCCGAAAAGAAAAGGGGCTCCCCATCCTTGTGGAGCTTCTGAGAATGGATAACGATAGAGTTGTTTCTTCCGTGGCAACAGCCTTGAGGAATATGGCACTAGATGTTCGCAACAAGGAGCTCATAGGCAAATACGCCATGCGAGACCTGGTCAACCGGCTCCCCGGCGGCAATGGCCCCAGTGTCTTGTCTGATGAGACCATGGCAGCCATCTGCTGTGCTCTGCACGAGGTCACCAGCAAAAACATGGAGAACGCAAAAGCCCTGGCCGACTCAGGAGGCATAGAGAAGCTGGTGAACATAACCAAAGGCAGGGGCGACAGATCATCTCTGAAAGTGGTGAAGGCAGCAGCCCAGGTCTTGAATACATTATGGCAATATCGGGACCTCCGGAGCATTTATAAAAAGGATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCGACATTGGAGCGAGACCGATTCAAATCACATCCTTCCTTGTCTACCACCAACCAACAGATGTCACCCATCATTCAGTCAGTCGGCAGCACCTCTTCCTCACCAGCACTGTTAGGAATCAGAGACCCTCGCTCTGAATACGATAGGACCCAGCCACCTATGCAGTATTACAATAGCCAAGGGGATGCCACACATAAAGGCCTGTACCCTGGCTCCAGCAAACCTTCACCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACGGCTACAGCATCAACAGCTGTATTATAGTCAAGATGACTCCAACAGAAAGAACTTTGATGCATACAGATTGTATTTGCAGTCTCCTCATAGCTATGAAGATCCTTATTTTGATGACCGAGTTCACTTTCCAGCTTCTACTGATTACTCAACACAGTATGGACTGAAATCGACCACAAATTATGTAGACTTTTATTCCACTAAACGACCTTCTTATAGAGCAGAACAGTACCCAGGGTCCCCAGACTCATGGGTGTAG MLKAVLKKSREGGKGGKKEAGLRSSYASQHSQLGQDLRSAVSPDLHITPIYEGRTYYSPVYRSPNHGTVELQGSQTALYRTGSVGIGNLQRTSSQRSTLTYQRNNYALNTTATYAEPYRPIQYRVQECNYNRLQHAVPADDGTTRSPSIDSIQKDPREFAWRDPELPEVIHMLQHQFPSVQANAAAYLQHLCFGDNKVKMEVCRLGGIKHLVDLLDHRVLEVQKNACGALRNLVFGKSTDENKIAMKNVGGIPALLRLLRKSIDAEVRELVTGVLWNLSSCDAVKMTIIRDALSTLTNTVIVPHSGWNNSSFDDDHKIKFQTSLVLRNTTGCLRNLSSAGEEARKQMRSCEGLVDSLLYVIHTCVNTSDYDSKTVENCVCTLRNLSYRLELEVPQARLLGLNELDDLLGKESPSKDSEPSCWGKKKKKKKRTPQEDQWDGVGPIPGLSKSPKGVEMLWHPSVVKPYLTLLAESSNPATLEGSAGSLQNLSAGNWKFAAYIRAAVRKEKGLPILVELLRMDNDRVVSSVATALRNMALDVRNKELIGKYAMRDLVNRLPGGNGPSVLSDETMAAICCALHEVTSKNMENAKALADSGGIEKLVNITKGRGDRSSLKVVKAAAQVLNTLWQYRDLRSIYKKDGWNQNHFITPVSTLERDRFKSHPSLSTTNQQMSPIIQSVGSTSSSPALLGIRDPRSEYDRTQPPMQYYNSQGDATHKGLYPGSSKPSPIYISSYSSPAREQNRRLQHQQLYYSQDDSNRKNFDAYRLYLQSPHSYEDPYFDDRVHFPASTDYSTQYGLKSTTNYVDFYSTKRPSYRAEQYPGSPDSWV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma OVARY,BREAST,BLADDER no_match 159825294,159954346,160007067 FALSE,FALSE,FALSE 159530189,159459582,159389692 FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30126 MRPS14::TNR ENSG00000120333.4::ENSG00000116147.18 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MRPS14 ENSG00000120333.4 protein_coding - - chr1:175010789-175023425:- chr1:175023364:- chr1:174979925-174992561:- chr1:174992500:- TNR ENSG00000116147.18 protein_coding - - chr1:175315194-175743595:- chr1:175406777:- chr1:175284330-175712731:- chr1:175375913:- chr1:175022772,chr1:175022779 chr1:175411598,chr1:175411602 NA NA chr1:174991908,chr1:174991915 chr1:175380734,chr1:175380738 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TNR:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.29Mb] 43 0 43 0 ONLY_REF_SPLICE YES_LDAS 0.384 GT 1.9329 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30127 ZNF106::ENSG00000259602 ENSG00000103994.18::ENSG00000259602.1 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF106 ENSG00000103994.18 protein_coding - - chr15:42412823-42491141:- chr15:42456958:- chr15:42705021-42783339:- chr15:42749156:- ENSG00000259602 ENSG00000259602.1 lncRNA + + chr15:48938236-48948031:+ chr15:48947185:+ chr15:49230433-49240228:+ chr15:49239382:+ chr15:42453253,chr15:42453259 chr15:48946789,chr15:48946783 NA NA chr15:42745451,chr15:42745457 chr15:49238986,chr15:49238980 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 43 15 43 15 ONLY_REF_SPLICE YES_LDAS 0.518 GT 1.6402 AG 1.4256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30128 MGA::GABRB3 ENSG00000174197.19::ENSG00000166206.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 978 FALSE NA FALSE NA MGA ENSG00000174197.19 protein_coding + + chr15:41621134-41773081:+ chr15:41713496:+ chr15:41913332-42065279:+ chr15:42005694:+ GABRB3 ENSG00000166206.16 protein_coding - - chr15:26543552-26939539:- chr15:26621534:- chr15:26788699-27184686:- chr15:26866681:- chr15:41719038,chr15:41719037 chr15:26671602,chr15:26671603 NA NA chr15:42011236,chr15:42011235 chr15:26916749,chr15:26916750 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame T-box|77-260|1.4e-76^MGA_dom|1043-1084|6.2e-16^HLH|2425-2474|2.5e-13^T-box|2755-2786|0.2 Neur_chan_LBD-PARTIAL|~241-242|2e-54^Neur_chan_memb|250-468|1.6e-59^OAD_gamma|305-357|6.5e-06 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:14.68Mb] 36 17 36 14.23 ONLY_REF_SPLICE YES_LDAS 0.4486 GT 1.7232 AG 1.8256 ENST00000219905.13 1-3430 ENST00000299267.9 241-1422 chr15|+|[0]41668895-41669958[1]|[2]41696075-41697023[2]|[0]41698863-41698941[0]|[1]41699064-41699159[0]|[1]41707728-41707859[0]|[1]41708104-41708208[0]|[1]41710691-41711349[2]|[0]41713151-41713496[0]<==>chr15|-|[2]26547793-26548134[0]|[2]26560932-26561176[1]|[0]26567581-26567733[1]|[0]26580319-26580456[1]|[0]26583332-26583414[2]|[1]26621314-26621534[0] atggaggagaaacagcagattatattggctaatcaagatggtggaacagtggcaggagcagcacctaccttctttgtcatcttaaagcagccaggaaatggcaaaactgatcaaggaattttggttactaatcaggatgcctgtgctttggctagtagtgtgtcatcaccagtaaaatctaaagggaagatttgccttccagctgattgtactgtgggtggaatcactgttaccctcgataacaatagtatgtggaatgagttctatcatcgaagcacagagatgattctgaccaagcaaggaagacgcatgtttccttactgtcgttattggataacaggtttagattcaaatttgaagtatattcttgtcatggatatatctcctgtggataaccatcgttataagtggaatggtcgttggtgggaacctagtgggaaggctgaacctcatgttttggggagggttttcattcatccagaatctccttccacaggtcattattggatgcatcaaccagtatctttctataaactcaaacttaccaacaatacactggaccaagaagggcatatcatcttgcactctatgcatcgttacctgccgaggcttcatttggtgcctgcagaaaaggctgtggaggtgatacaattaaatggccctggtgtccacacttttaccttcccacagactgaattctttgcagtaacagcttatcagaacattcagattactcagctgaaaatagattacaatccatttgccaaaggctttcgggatgatgggctgaataataagccccagagagatggaaaacaaaagaacagctctgaccaagaagggaataatatttccagttcttctggtcatcgggtccgtcttacagaaggtcaggggtcagagatacaaccaggtgatttggatcctttgtcaaggggtcatgaaacatcaggcaagggtttggagaagacttcccttaatataaaacgagactttcttggtttcatggatactgattcagcacttagtgaagttcctcaattgaagcaagagatttctgaatgtcttattgccagcagttttgaagatgactcccgtgtagcctcaccgttagaccagaacggaagcttcaatgttgttattaaagaggaacctctagatgattatgactacgaacttggtgagtgcccagaaggggtcactgtgaaacaggaagagacagatgaagagacggatgtatactcaaacagtgatgatgatcctatactagagaaacagctaaagaggcacaataaagttgacaacccagaagctgaccatctatcttctaaatggcttccaagcagcccatcaggtgttgctaaagctaaaatgttcaaattagacactggaaagatgccagtagtctatctggagccctgtgctgtcaccagaagcacagttaagatttctgaactccccgataacatgctttccacatctcgaaaggataaatcttctatgttggcagaattggaatatttgcctacatacattgaaaattccaatgagactgccttctgcttaggcaaggaatcagaaaatggtcttagaaaacattcaccagatctcagagtggtacaaaaatatcccttactgaaagagcctcagtggaaatatcctgatatatctgacagcattagcacagaaagaatactcgacgattcaaaggattcagttggagactcactttcaggaaaagaggacttgggcagaaagagaacaactatgcttaagattgcaacagccgcaaaggtagtgaatgctaatcagaatgcctctccaaatgtccctggaaaaagaggaaggccacgaaaattgaaactctgtaaggcaggacgaccacctaagaacacaggaaagtctttaatttctacaaagaatacacctgtaagccctgggagtacctttccagatgtgaagcctgatctggaagatgtggatggtgttctctttgtttcctttgaatcaaaggaagctctagacattcatgcagttgatgggacaacagaagaatcttctagtctccaggcatcaaccacaaatgactcaggttacagagcaagaatttcccagttggaaaaggaattgatagaagatttgaagactttgcggcacaagcaggtgatacatcctggtcttcaagaagtgggcttaaaattgaattcagtggatccaacaatgagcattgatcttaaatacttgggagtacagttacctttggctccagctactagctttcctttttggaaccttacaggaaccaaccctgcctctcctgatgcgggatttccctttgtttctaggacagggaaaaccaatgatttcactaagatcaagggatggaggggaaaatttcatagtgcttctgcatctaggaatgaaggtggaaattcagaaagttcactgaaaaatcgttctgctttctgtagtgataagctagatgaatacttggaaaatgaaggcaagctgatggaaacaagcatgggtttttcttctaatgctcccacatctcctgtggtgtaccagcttcccactaagagtaccagttatgtacgaacacttgatagtgtactaaagaagcaatctactatttccccttctacctcttattctttgaaacctcattctgtaccccctgtctctcgaaaggcaaagtctcaaaacagacaggcaactttcagtggccgaactaaatcatcttataaatccattttaccataccctgtttcaccaaagcagaaatactctcatgtgattctaggagataaggttaccaagaattcttcaggcatcatctcagaaaatcaggcgaataactttgttgtgccaactttggatgaaaatatatttccaaagcagattagtttgcggcaggcacagcagcagcagcaacagcaacagggaagtcgccctccaggcttgtctaaatctcaggtgaagctaatggacctggaagactgtgcactttgggaaggaaaaccaaggacatacatcacagaagagcgagcagatgtatccttaacaactctacttacagctcaagcatccctcaaaactaaacctatccacacaatcataaggaaacgagcccctccctgcaacaatgacttctgtcgactgggttgtgtatgttccagtctagctttggagaagcgccaacctgctcactgccgccgaccagactgcatgtttggttgtacttgtttgaaaagaaaagttgtacttgttaaaggaggatccaaaactaagcattttcagaggaaggctgctcatcgagatccagtattttatgatactctgggagaggaggcaagggaggaggaagaaggaatcagggaggaggaggaacaattgaaagagaaaaagaagagaaagaagctagaatacaGATTATACCTTAACCATGTATTTTCAACAATATTGGAGAGATAAAAGGCTCGCCTATTCTGGGATCCCTCTCAACCTCACGCTTGACAATCGAGTGGCTGACCAGCTATGGGTGCCCGACACATATTTCTTAAATGACAAAAAGTCATTTGTGCATGGAGTGACAGTGAAAAACCGCATGATCCGTCTTCACCCTGATGGGACAGTGCTGTATGGGCTCAGAATCACCACGACAGCAGCATGCATGATGGACCTCAGGAGATACCCCCTGGACGAGCAGAACTGCACTCTGGAAATTGAAAGCTATGGCTACACCACGGATGACATTGAGTTTTACTGGCGAGGCGGGGACAAGGCTGTTACCGGAGTGGAAAGGATTGAGCTCCCGCAGTTCTCCATCGTGGAGCACCGTCTGGTCTCGAGGAATGTTGTCTTCGCCACAGGTGCCTATCCTCGACTGTCACTGAGCTTTCGGTTGAAGAGGAACATTGGATACTTCATTCTTCAGACTTATATGCCCTCTATACTGATAACGATTCTGTCGTGGGTGTCCTTCTGGATCAATTATGATGCATCTGCTGCTAGAGTTGCCCTCGGGATCACAACTGTGCTGACAATGACAACCATCAACACCCACCTTCGGGAGACCTTGCCCAAAATCCCCTATGTCAAAGCCATTGACATGTACCTTATGGGCTGCTTCGTCTTTGTGTTCCTGGCCCTTCTGGAGTATGCCTTTGTCAACTACATTTTCTTTGGAAGAGGCCCTCAAAGGCAGAAGAAGCTTGCAGAAAAGACAGCCAAGGCAAAGAATGACCGTTCAAAGAGCGAAAGCAACCGGGTGGATGCTCATGGAAATATTCTGTTGACATCGCTGGAAGTTCACAATGAAATGAATGAGGTCTCAGGCGGCATTGGCGATACCAGGAATTCAGCAATATCCTTTGACAACTCAGGAATCCAGTACAGGAAACAGAGCATGCCTCGAGAAGGGCATGGGCGATTCCTGGGGGACAGAAGCCTCCCGCACAAGAAGACCCATCTACGGAGGAGGTCTTCACAGCTCAAAATTAAAATACCTGATCTAACCGATGTGAATGCCATAGACAGATGGTCCAGGATCGTGTTTCCATTCACTTTTTCTCTTTTCAACTTAGTTTACTGGCTGTACTATGTTAACTGA MEEKQQIILANQDGGTVAGAAPTFFVILKQPGNGKTDQGILVTNQDACALASSVSSPVKSKGKICLPADCTVGGITVTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDSNLKYILVMDISPVDNHRYKWNGRWWEPSGKAEPHVLGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKAVEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLNNKPQRDGKQKNSSDQEGNNISSSSGHRVRLTEGQGSEIQPGDLDPLSRGHETSGKGLEKTSLNIKRDFLGFMDTDSALSEVPQLKQEISECLIASSFEDDSRVASPLDQNGSFNVVIKEEPLDDYDYELGECPEGVTVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNPEADHLSSKWLPSSPSGVAKAKMFKLDTGKMPVVYLEPCAVTRSTVKISELPDNMLSTSRKDKSSMLAELEYLPTYIENSNETAFCLGKESENGLRKHSPDLRVVQKYPLLKEPQWKYPDISDSISTERILDDSKDSVGDSLSGKEDLGRKRTTMLKIATAAKVVNANQNASPNVPGKRGRPRKLKLCKAGRPPKNTGKSLISTKNTPVSPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEESSSLQASTTNDSGYRARISQLEKELIEDLKTLRHKQVIHPGLQEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHSASASRNEGGNSESSLKNRSAFCSDKLDEYLENEGKLMETSMGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPVSRKAKSQNRQATFSGRTKSSYKSILPYPVSPKQKYSHVILGDKVTKNSSGIISENQANNFVVPTLDENIFPKQISLRQAQQQQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCVCSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHRDPVFYDTLGEEAREEEEGIREEEEQLKEKKKRKKLEYRLYLNHVFSTILER*KARLFWDPSQPHA*QSSG*PAMGARHIFLK*QKVICAWSDSEKPHDPSSP*WDSAVWAQNHHDSSMHDGPQEIPPGRAELHSGN*KLWLHHG*H*VLLARRGQGCYRSGKD*APAVLHRGAPSGLEECCLRHRCLSSTVTELSVEEEHWILHSSDLYALYTDNDSVVGVLLDQL*CICC*SCPRDHNCADNDNHQHPPSGDLAQNPLCQSH*HVPYGLLRLCVPGPSGVCLCQLHFLWKRPSKAEEACRKDSQGKE*PFKERKQPGGCSWKYSVDIAGSSQ*NE*GLRRHWRYQEFSNIL*QLRNPVQETEHASRRAWAIPGGQKPPAQEDPSTEEVFTAQN*NT*SNRCECHRQMVQDRVSIHFFSFQLSLLAVLC*L FALSE TRUE hsa-mir-626 chr15:41691585-41691678:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30130 C18orf25::GREB1L ENSG00000152242.11::ENSG00000141449.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA C18orf25 ENSG00000152242.11 protein_coding + + chr18:46173553-46266992:+ chr18:46253823:+ chr18:43753519-43846955:+ chr18:43833786:+ GREB1L ENSG00000141449.16 protein_coding + + chr18:21242232-21526112:+ chr18:21366027:+ chr18:18822193-19106073:+ chr18:18945988:+ chr18:46262546,chr18:46262546 chr18:21358264,chr18:21358261 NA NA chr18:43842509,chr18:43842509 chr18:18938225,chr18:18938222 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:24.65Mb] 25 6 25 5.91 ONLY_REF_SPLICE YES_LDAS 0.2761 GT 1.8892 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30132 FANCA::CDK10 ENSG00000187741.16::ENSG00000185324.22 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1710 TRUE 675 FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89758577:- chr16:89793091-89883385:- chr16:89824985:- CDK10 ENSG00000185324.22 protein_coding + + chr16:89680737-89696354:+ chr16:89690553:+ chr16:89747145-89762762:+ chr16:89756961:+ chr16:89757992 chr16:89687413 NA NA chr16:89824400 chr16:89753821 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Fanconi_A_N|170-524|3.7e-172^Fanconi_A|1254-1316|7.8e-35 Pkinase-PARTIAL|~20-276|1.5e-60^PK_Tyr_Ser-Thr-PARTIAL|~20-187|3.8e-32^Kinase-like-PARTIAL|~20-46|0.26^RIO1|29-130|9.7e-06^Kdo|75-128|5.8e-05^Haspin_kinase|89-141|3e-05^Kinase-like|94-180|8.1e-08 ["FANCA:Oncogene","FANCA:FoundationOne_panel","FANCA:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.04Mb];LOCAL_INVERSION:-:+:[41185] 16 32 16 5.17 ONLY_REF_SPLICE YES_LDAS 0.1891 GT 1.9656 AG 1.7819 ENST00000564475.6 1-2981 ENST00000331006.12 20-942 chr16|-|[1]89758577-89758705[2]|[1]89761949-89762022[0]|[2]89764890-89765066[0]|[2]89767141-89767237[2]|[1]89769837-89770024[0]|[2]89770166-89770259[2]|[1]89770564-89770634[0]|[2]89771678-89771814[1]|[0]89773271-89773384[1]|[0]89775742-89775815[2]|[1]89778801-89778850[0]|[2]89778943-89779003[2]|[1]89779869-89779957[0]|[2]89782859-89782918[0]|[2]89783007-89783102[0]|[2]89784854-89784964[0]|[2]89791403-89791536[1]|[0]89791927-89792068[0]|[2]89792471-89792547[1]|[0]89795906-89796018[2]|[1]89799166-89799232[1]|[0]89799605-89799638[0]|[2]89803259-89803341[1]|[0]89805280-89805392[2]|[1]89808294-89808367[0]|[2]89810707-89810802[0]|[2]89810929-89811071[1]|[0]89814520-89814613[0]|[2]89815877-89815986[1]|[0]89816537-89816615[0]<==>chr16|+|[1]89690553-89690624[0]|[1]89691443-89691545[1]|[2]89691806-89691887[2]|[0]89692449-89692516[1]|[2]89693274-89693326[0]|[1]89693398-89693467[1]|[2]89694173-89694232[1]|[2]89694665-89694788[2]|[0]89694931-89695070[1]|[2]89695293-89695345[0]|[1]89695595-89695692[2] atgtccgactcgtgggtcccgaactccgcctcgggccaggacccagggggccgccggagggcctgggccgagctgctggcgggaagggtcaagagggaaaaatataatcctgaaagggcacagaaattaaaggaatcagctgtgcgcctcctgcgaagccatcaggacctgaatgcccttttgcttgaggtagaaggtccactgtgtaaaaaattgtctctcagcaaagtgattgactgtgacagttctgaggcctatgctaatcattctagttcatttataggctctgctttgcaggatcaagcctcaaggctgggggttcccgtgggtattctctcagccgggatggttgcctctagcgtgggacagatctgcacggctccagcggagaccagtcaccctgtgctgctgactgtggagcagagaaagaagctgtcttccctgttagagtttgctcagtatttattggcacacagtatgttctcccgtctttccttctgtcaagaattatggaaaatacagagttctttgttgcttgaagcggtgtggcatcttcacgtacaaggcattgtgagcctgcaagagctgctggaaagccatcccgacatgcatgctgtgggatcgtggctcttcaggaatctgtgctgcctttgtgaacagatggaagcatcctgccagcatgctgacgtcgccagggccatgctttctgattttgttcaaatgtttgttttgaggggatttcagaaaaactcagatctgagaagaactgtggagcctgaaaaaatgccgcaggtcacggttgatgtactgcagagaatgctgatttttgcacttgacgctttggctgctggagtacaggaggagtcctccactcacaagatcgtgaggtgctggttcggagtgttcagtggacacacgcttggcagtgtaatttccacagatcctctgaagaggttcttcagtcataccctgactcagatactcactcacagccctgtgctgaaagcatctgatgctgttcagatgcagagagagtggagctttgcgcggacacaccctctgctcacctcactgtaccgcaggctctttgtgatgctgagtgcagaggagttggttggccatttgcaagaagttctggaaacgcaggaggttcactggcagagagtgctctcctttgtgtctgccctggttgtctgctttccagaagcgcagcagctgcttgaagactgggtggcgcgtttgatggcccaggcattcgagagctgccagctggacagcatggtcactgcgttcctggttgtgcgccaggcagcactggagggcccctctgcgttcctgtcatatgcagactggttcaaggcctcctttgggagcacacgaggctaccatggctgcagcaagaaggccctggtcttcctgtttacgttcttgtcagaactcgtgccttttgagtctccccggtacctgcaggtgcacattctccacccacccctggttcccggcaagtaccgctccctcctcacagactacatctcattggccaagacacggctggccgacctcaaggtttctatagaaaacatgggactctacgaggatttgtcatcagctggggacattactgagccccacagccaagctcttcaggatgttgaaaaggccatcatggtgtttgagcatacggggaacatcccagtcaccgtcatggaggccagcatattcaggaggccttactacgtgtcccacttcctccccgccctgctcacacctcgagtgctccccaaagtccctgactcccgtgtggcgtttatagagtctctgaagagagcagataaaatccccccatctctgtactccacctactgccaggcctgctctgctgctgaagagaagccagaagatgcagccctgggagtgagggcagaacccaactctgctgaggagcccctgggacagctcacagctgcactgggagagctgagagcctccatgacagaccccagccagcgtgatgttatatcggcacaggtggcagtgatttctgaaagactgagggctgtcctgggccacaatgaggatgacagcagcgttgagatatcaaagattcagctcagcatcaacacgccgagactggagccacgggaacacatggctgtggacctcctgctgacgtctttctgtcagaacctgatggctgcctccagtgtcgctcccccggagaggcagggtccctgggctgccctcttcgtgaggaccatgtgtggacgtgtgctccctgcagtgctcacccggctctgccagctgctccgtcaccagggcccgagcctgagtgccccacatgtgctggggttggctgccctggccgtgcacctgggtgagtccaggtctgcgctcccagaggtggatgtgggtcctcctgcacctggtgctggccttcctgtccctgcgctctttgacagcctcctgacctgtaggacgagggattccttgttcttctgcctgaaattttgtacagcagcaatttcttactctctctgcaagttttcttcccagtcacgagatactttgtgcagctgcttatctccaggccttattaaaaagtttcagttcctcatgttcagattgttctcagaggcccgacagcctctttctgaggaggacgtagccagcctttcctggagacccttgcaccttccttctgcagactggcagagagctgccctctctctctggacacacagaaccttccgagaggtgttgaaagaggaagatgttcacttaacttaccaagactggttacacctggagctggaaattcaacctgaagctgatgctctttcagatactgaacggcaggacttccaccagtgggcgatccatgagcactttctccctgagtcctcggcttcagggggctgtgacggagacctgcaggctgcgtgtaccattcttgtcaacgcactgatggatttccaccaaagATCGGGCCCGGGACACCCAGACAGATGAGATTGTCGCACTGAAGAAGGTGCGGATGGACAAGGAGAAGGATGGCATCCCCATCAGCAGCTTGCGGGAGATCACGCTGCTGCTCCGCCTGCGTCATCCGAACATCGTGGAGCTGAAGGAGGTGGTTGTGGGGAACCACCTGGAGAGCATCTTCCTGGTGATGGGTTACTGTGAGCAGGACCTGGCCAGCCTCCTGGAGAATATGCCAACACCCTTCTCGGAGGCTCAGGTCAAGTGCATCGTGCTGCAGGTGCTCCGGGGCCTCCAGTATCTGCACAGGAACTTCATTATCCACAGGGACCTGAAGGTTTCCAACTTGCTCATGACCGACAAGGGTTGTGTGAAGACAGCGGATTTCGGCCTGGCCCGGGCCTATGGTGTCCCAGTAAAGCCAATGACCCCCAAGGTGGTCACTCTCTGGTACCGAGCCCCTGAACTGCTGTTGGGAACCACCACGCAGACCACCAGCATCGACATGTGGGCTGTGGGCTGCATACTGGCCGAGCTGCTGGCGCACAGGCCTCTTCTCCCCGGCACTTCCGAGATCCACCAGATCGACTTGATCGTGCAGCTGCTGGGCACGCCCAGTGAGAACATCTGGCCGGGCTTTTCCAAGCTGCCACTGGTCGGCCAGTACAGCCTCCGGAAGCAGCCCTACAACAACCTGAAGCACAAGTTCCCATGGCTGTCGGAGGCCGGGCTGCGCCTGCTGCACTTCCTGTTCATGTACGACCCTAAGAAAAGGGCGACGGCCGGGGACTGCCTGGAGAGCTCCTATTTCAAGGAGAAGCCCCTACCCTGTGAGCCGGAGCTCATGCCGACCTTTCCCCACCACCGCAACAAGCGGGCCGCCCCAGCCACCTCCGAGGGCCAGAGCAAGCGCTGTAAACCCTGA MSDSWVPNSASGQDPGGRRRAWAELLAGRVKREKYNPERAQKLKESAVRLLRSHQDLNALLLEVEGPLCKKLSLSKVIDCDSSEAYANHSSSFIGSALQDQASRLGVPVGILSAGMVASSVGQICTAPAETSHPVLLTVEQRKKLSSLLEFAQYLLAHSMFSRLSFCQELWKIQSSLLLEAVWHLHVQGIVSLQELLESHPDMHAVGSWLFRNLCCLCEQMEASCQHADVARAMLSDFVQMFVLRGFQKNSDLRRTVEPEKMPQVTVDVLQRMLIFALDALAAGVQEESSTHKIVRCWFGVFSGHTLGSVISTDPLKRFFSHTLTQILTHSPVLKASDAVQMQREWSFARTHPLLTSLYRRLFVMLSAEELVGHLQEVLETQEVHWQRVLSFVSALVVCFPEAQQLLEDWVARLMAQAFESCQLDSMVTAFLVVRQAALEGPSAFLSYADWFKASFGSTRGYHGCSKKALVFLFTFLSELVPFESPRYLQVHILHPPLVPGKYRSLLTDYISLAKTRLADLKVSIENMGLYEDLSSAGDITEPHSQALQDVEKAIMVFEHTGNIPVTVMEASIFRRPYYVSHFLPALLTPRVLPKVPDSRVAFIESLKRADKIPPSLYSTYCQACSAAEEKPEDAALGVRAEPNSAEEPLGQLTAALGELRASMTDPSQRDVISAQVAVISERLRAVLGHNEDDSSVEISKIQLSINTPRLEPREHMAVDLLLTSFCQNLMAASSVAPPERQGPWAALFVRTMCGRVLPAVLTRLCQLLRHQGPSLSAPHVLGLAALAVHLGESRSALPEVDVGPPAPGAGLPVPALFDSLLTCRTRDSLFFCLKFCTAAISYSLCKFSSQSRDTLCSCLSPGLIKKFQFLMFRLFSEARQPLSEEDVASLSWRPLHLPSADWQRAALSLWTHRTFREVLKEEDVHLTYQDWLHLELEIQPEADALSDTERQDFHQWAIHEHFLPESSASGGCDGDLQAACTILVNALMDFHQRSGPGHPDR*DCRTEEGADGQGEGWHPHQQLAGDHAAAPPASSEHRGAEGGGCGEPPGEHLPGDGLL*AGPGQPPGEYANTLLGGSGQVHRAAGAPGPPVSAQELHYPQGPEGFQLAHDRQGLCEDSGFRPGPGLWCPSKANDPQGGHSLVPSP*TAVGNHHADHQHRHVGCGLHTGRAAGAQASSPRHFRDPPDRLDRAAAGHAQ*EHLAGLFQAATGRPVQPPEAALQQPEAQVPMAVGGRAAPAALPVHVRP*EKGDGRGLPGELLFQGEAPTL*AGAHADLSPPPQQAGRPSHLRGPEQAL*TL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 10 CMGC CDK CDK10 Q15131 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 30133 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 982 TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17689142:+ chr22:18111621-18213621:+ chr22:18171908:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HSCB_C|67-103|0.00014^HSCB_C|126-163|0.33^CEND1|266-281|0.57^HSCB_C|371-405|0.055^CEND1-PARTIAL|406-458~|2.1e-07 RING_CBP-p300-PARTIAL|~1169-1195|1.1e-26^ZZ|1198-1207|0.27^ZZ|1270-1283|1.9^HAT_KAT11|1306-1611|4.9e-88^ZZ|1665-1705|3.3e-18^zf-TAZ|1669-1695|8.7^zf-TAZ|1735-1806|2.2e-15^ZZ|1779-1797|10^RING_CBP-p300|1787-1796|3.6^Creb_binding|1816-1865|10^Creb_binding|1918-1962|10^Creb_binding|1992-2098|3.3e-39^Npa1|2044-2089|5.4e-07^Creb_binding|2121-2187|10^Creb_binding|2164-2216|10^Creb_binding|2205-2261|10^Creb_binding|2233-2308|10 ["EP300:Oncogene","EP300:ArcherDX_panel","EP300:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:23.36Mb] 14 7 14 3.63 ONLY_REF_SPLICE YES_LDAS 0.1574 GT 1.9656 AG 1.9899 ENST00000611738.4 1-458 ENST00000263253.9 1169-7245 chr22|+|[0]17638694-17638886[0]|[1]17683214-17683321[0]|[1]17688986-17689142[1]<==>chr22|+|[1]41129890-41130003[0]|[1]41131388-41131633[0]|[1]41135813-41135906[1]|[2]41137653-41137790[1]|[2]41140140-41140257[2]|[0]41141048-41141222[0]|[1]41146739-41146816[0]|[1]41147837-41147946[2]|[0]41149038-41149175[2]|[0]41149761-41150198[2]|[0]41151833-41152012[2]|[0]41152206-41152350[0]|[1]41154995-41155113[2]|[0]41157169-41157408[2]|[0]41158412-41158500[1]|[2]41160642-41160722[1]|[2]41162723-41162779[1]|[2]41164053-41164130[1]|[2]41166599-41166666[0]|[1]41168449-41168599[1]|[2]41168721-41168867[1]|[2]41169503-41169616[1]|[2]41170406-41170571[2]|[0]41172499-41172663[2]|[0]41173623-41173784[2]|[0]41176247-41176528[2]|[0]41176773-41178956[2] atgtcaggtagttcaggtcccgccccgacgccggccgtgacgaaggcacgccggggtgacctcaccctccaacatggcggcggcggtagattagggccgcgggtcggagcactcaccgccgctgggggaccctgtcggaagcaactgccgccgccgcctctttcatctcttctggggcaggggccagggccaggggttcaactagatatagcttcacaatctctggatcaagaaattttattaaaagttaaaactgaaattgaagaagagctaaaatctctggacaaagaaatttctgaagccttcaccagcacaggctttgaccgtcacacttctccagtgttcagccctgccaatccagaaagctcaatggaagactgcttggcccatcttggagaaaaagtgtcccaggaactgaaagagcctctccataaagcattgcaaatgctcctgagccaTGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGCCAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTAAGCACTGTTAGTCAGATTGATCCCAGCTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCGACACAACCCCAGGTGCAAGCAAAGAACCAGCAGAATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATGAGCAACATGAGTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAGTTCAAACGCCGAGTCTTCTTTCTGACTCAATGTTGCATTCAGCCATAAATTCTCAAAACCCAATGATGAGTGAAAATGCCAGTGTGCCCTCCCTGGGTCCTATGCCAACAGCAGCTCAACCATCCACTACTGGAATTCGGAAACAGTGGCACGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCACAAACTCGTCCAAGCCATATTTCCTACGCCGGATCCTGCTGCTTTAAAAGACAGACGGATGGAAAACCTAGTTGCATATGCTCGGAAAGTTGAAGGGGACATGTATGAATCTGCAAACAATCGAGCGGAATACTACCACCTTCTAGCTGAGAAAATCTATAAGATCCAGAAAGAACTAGAAGAAAAACGAAGGACCAGACTACAGAAGCAGAACATGCTACCAAATGCTGCAGGCATGGTTCCAGTTTCCATGAATCCAGGGCCTAACATGGGACAGCCGCAACCAGGAATGACTTCTAATGGCCCTCTACCTGACCCAAGTATGATCCGTGGCAGTGTGCCAAACCAGATGATGCCTCGAATAACTCCACAATCTGGTTTGAATCAATTTGGCCAGATGAGCATGGCCCAGCCCCCTATTGTACCCCGGCAAACCCCTCCTCTTCAGCACCATGGACAGTTGGCTCAACCTGGAGCTCTCAACCCGCCTATGGGCTATGGGCCTCGTATGCAACAGCCTTCCAACCAGGGCCAGTTCCTTCCTCAGACTCAGTTCCCATCACAGGGAATGAATGTAACAAATATCCCTTTGGCTCCGTCCAGCGGTCAAGCTCCAGTGTCTCAAGCACAAATGTCTAGTTCTTCCTGCCCGGTGAACTCTCCTATAATGCCTCCAGGGTCTCAGGGGAGCCACATTCACTGTCCCCAGCTTCCTCAACCAGCTCTTCATCAGAATTCACCCTCGCCTGTACCTAGTCGTACCCCCACCCCTCACCATACTCCCCCAAGCATAGGGGCTCAGCAGCCACCAGCAACAACAATTCCAGCCCCTGTTCCTACACCTCCTGCCATGCCACCTGGGCCACAGTCCCAGGCTCTACATCCCCCTCCAAGGCAGACACCTACACCACCAACAACACAACTTCCCCAACAAGTGCAGCCTTCACTTCCTGCTGCACCTTCTGCTGACCAGCCCCAGCAGCAGCCTCGCTCACAGCAGAGCACAGCAGCGTCTGTTCCTACCCCAACAGCACCGCTGCTTCCTCCGCAGCCTGCAACTCCACTTTCCCAGCCAGCTGTAAGCATTGAAGGACAGGTATCAAATCCTCCATCTACTAGTAGCACAGAAGTGAATTCTCAGGCCATTGCTGAGAAGCAGCCTTCCCAGGAAGTGAAGATGGAGGCCAAAATGGAAGTGGATCAACCAGAACCAGCAGATACTCAGCCGGAGGATATTTCAGAGTCTAAAGTGGAAGACTGTAAAATGGAATCTACCGAAACAGAAGAGAGAAGCACTGAGTTAAAAACTGAAATAAAAGAGGAGGAAGACCAGCCAAGTACTTCAGCTACCCAGTCATCTCCGGCTCCAGGACAGTCAAAGAAAAAGATTTTCAAACCAGAAGAACTACGACAGGCACTGATGCCAACTTTGGAGGCACTTTACCGTCAGGATCCAGAATCCCTTCCCTTTCGTCAACCTGTGGACCCTCAGCTTTTAGGAATCCCTGATTACTTTGATATTGTGAAGAGCCCCATGGATCTTTCTACCATTAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGCAGTATGTCGATGATATTTGGCTTATGTTCAATAATGCCTGGTTATATAACCGGAAAACATCACGGGTATACAAATACTGCTCCAAGCTCTCTGAGGTCTTTGAACAAGAAATTGACCCAGTGATGCAAAGCCTTGGATACTGTTGTGGCAGAAAGTTGGAGTTCTCTCCACAGACACTGTGTTGCTACGGCAAACAGTTGTGCACAATACCTCGTGATGCCACTTATTACAGTTACCAGAACAGGTATCATTTCTGTGAGAAGTGTTTCAATGAGATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAACTACAATAAATAAAGAACAATTTTCCAAGAGAAAAAATGACACACTGGATCCTGAACTGTTTGTTGAATGTACAGAGTGCGGAAGAAAGATGCATCAGATCTGTGTCCTTCACCATGAGATCATCTGGCCTGCTGGATTCGTCTGTGATGGCTGTTTAAAGAAAAGTGCACGAACTAGGAAAGAAAATAAGTTTTCTGCTAAAAGGTTGCCATCTACCAGACTTGGCACCTTTCTAGAGAATCGTGTGAATGACTTTCTGAGGCGACAGAATCACCCTGAGTCAGGAGAGGTCACTGTTAGAGTAGTTCATGCTTCTGACAAAACCGTGGAAGTAAAACCAGGCATGAAAGCAAGGTTTGTGGACAGTGGAGAGATGGCAGAATCCTTTCCATACCGAACCAAAGCCCTCTTTGCCTTTGAAGAAATTGATGGTGTTGACCTGTGCTTCTTTGGCATGCATGTTCAAGAGTATGGCTCTGACTGCCCTCCACCCAACCAGAGGAGAGTATACATATCTTACCTCGATAGTGTTCATTTCTTCCGTCCTAAATGCTTGAGGACTGCAGTCTATCATGAAATCCTAATTGGATATTTAGAATATGTCAAGAAATTAGGTTACACAACAGGGCATATTTGGGCATGTCCACCAAGTGAGGGAGATGATTATATCTTCCATTGCCATCCTCCTGACCAGAAGATACCCAAGCCCAAGCGACTGCAGGAATGGTACAAAAAAATGCTTGACAAGGCTGTATCAGAGCGTATTGTCCATGACTACAAGGATATTTTTAAACAAGCTACTGAAGATAGATTAACAAGTGCAAAGGAATTGCCTTATTTCGAGGGTGATTTCTGGCCCAATGTTCTGGAAGAAAGCATTAAGGAACTGGAACAGGAGGAAGAAGAGAGAAAACGAGAGGAAAACACCAGCAATGAAAGCACAGATGTGACCAAGGGAGACAGCAAAAATGCTAAAAAGAAGAATAATAAGAAAACCAGCAAAAATAAGAGCAGCCTGAGTAGGGGCAACAAGAAGAAACCCGGGATGCCCAATGTATCTAACGACCTCTCACAGAAACTATATGCCACCATGGAGAAGCATAAAGAGGTCTTCTTTGTGATCCGCCTCATTGCTGGCCCTGCTGCCAACTCCCTGCCTCCCATTGTTGATCCTGATCCTCTCATCCCCTGCGATCTGATGGATGGTCGGGATGCGTTTCTCACGCTGGCAAGGGACAAGCACCTGGAGTTCTCTTCACTCCGAAGAGCCCAGTGGTCCACCATGTGCATGCTGGTGGAGCTGCACACGCAGAGCCAGGACCGCTTTGTCTACACCTGCAATGAATGCAAGCACCATGTGGAGACACGCTGGCACTGTACTGTCTGTGAGGATTATGACTTGTGTATCACCTGCTATAACACTAAAAACCATGACCACAAAATGGAGAAACTAGGCCTTGGCTTAGATGATGAGAGCAACAACCAGCAGGCTGCAGCCACCCAGAGCCCAGGCGATTCTCGCCGCCTGAGTATCCAGCGCTGCATCCAGTCTCTGGTCCATGCTTGCCAGTGTCGGAATGCCAATTGCTCACTGCCATCCTGCCAGAAGATGAAGCGGGTTGTGCAGCATACCAAGGGTTGCAAACGGAAAACCAATGGCGGGTGCCCCATCTGCAAGCAGCTCATTGCCCTCTGCTGCTACCATGCCAAGCACTGCCAGGAGAACAAATGCCCGGTGCCGTTCTGCCTAAACATCAAGCAGAAGCTCCGGCAGCAACAGCTGCAGCACCGACTACAGCAGGCCCAAATGCTTCGCAGGAGGATGGCCAGCATGCAGCGGACTGGTGTGGTTGGGCAGCAACAGGGCCTCCCTTCCCCCACTCCTGCCACTCCAACGACACCAACTGGCCAACAGCCAACCACCCCGCAGACGCCCCAGCCCACTTCTCAGCCTCAGCCTACCCCTCCCAATAGCATGCCACCCTACTTGCCCAGGACTCAAGCTGCTGGCCCTGTGTCCCAGGGTAAGGCAGCAGGCCAGGTGACCCCTCCAACCCCTCCTCAGACTGCTCAGCCACCCCTTCCAGGGCCCCCACCTGCAGCAGTGGAAATGGCAATGCAGATTCAGAGAGCAGCGGAGACGCAGCGCCAGATGGCCCACGTGCAAATTTTTCAAAGGCCAATCCAACACCAGATGCCCCCGATGACTCCCATGGCCCCCATGGGTATGAACCCACCTCCCATGACCAGAGGTCCCAGTGGGCATTTGGAGCCAGGGATGGGACCGACAGGGATGCAGCAACAGCCACCCTGGAGCCAAGGAGGATTGCCTCAGCCCCAGCAACTACAGTCTGGGATGCCAAGGCCAGCCATGATGTCAGTGGCCCAGCATGGTCAACCTTTGAACATGGCTCCACAACCAGGATTGGGCCAGGTAGGTATCAGCCCACTCAAACCAGGCACTGTGTCTCAACAAGCCTTACAAAACCTTTTGCGGACTCTCAGGTCTCCCAGCTCTCCCCTGCAGCAGCAACAGGTGCTTAGTATCCTTCACGCCAACCCCCAGCTGTTGGCTGCATTCATCAAGCAGCGGGCTGCCAAGTATGCCAACTCTAATCCACAACCCATCCCTGGGCAGCCTGGCATGCCCCAGGGGCAGCCAGGGCTACAGCCACCTACCATGCCAGGTCAGCAGGGGGTCCACTCCAATCCAGCCATGCAGAACATGAATCCAATGCAGGCGGGCGTTCAGAGGGCTGGCCTGCCCCAGCAGCAACCACAGCAGCAACTCCAGCCACCCATGGGAGGGATGAGCCCCCAGGCTCAGCAGATGAACATGAACCACAACACCATGCCTTCACAATTCCGAGACATCTTGAGACGACAGCAAATGATGCAACAGCAGCAGCAACAGGGAGCAGGGCCAGGAATAGGCCCTGGAATGGCCAACCATAACCAGTTCCAGCAACCCCAAGGAGTTGGCTACCCACCACAGCAGCAGCAGCGGATGCAGCATCACATGCAACAGATGCAACAAGGAAATATGGGACAGATAGGCCAGCTTCCCCAGGCCTTGGGAGCAGAGGCAGGTGCCAGTCTACAGGCCTATCAGCAGCGACTCCTTCAGCAACAGATGGGGTCCCCTGTTCAGCCCAACCCCATGAGCCCCCAGCAGCATATGCTCCCAAATCAGGCCCAGTCCCCACACCTACAAGGCCAGCAGATCCCTAATTCTCTCTCCAATCAAGTGCGCTCTCCCCAGCCTGTCCCTTCTCCACGGCCACAGTCCCAGCCCCCCCACTCCAGTCCTTCCCCAAGGATGCAGCCTCAGCCTTCTCCACACCACGTTTCCCCACAGACAAGTTCCCCACATCCTGGACTGGTAGCTGCCCAGGCCAACCCCATGGAACAAGGGCATTTTGCCAGCCCGGACCAGAATTCAATGCTTTCTCAGCTTGCTAGCAATCCAGGCATGGCAAACCTCCATGGTGCAAGCGCCACGGACCTGGGACTCAGCACCGATAACTCAGACTTGAATTCAAACCTCTCACAGAGTACACTAGACATACACTAG MSGSSGPAPTPAVTKARRGDLTLQHGGGGRLGPRVGALTAAGGPCRKQLPPPPLSSLLGQGPGPGVQLDIASQSLDQEILLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSMEDCLAHLGEKVSQELKEPLHKALQMLLSHGTLCIFSTNHFTLEELYKT*LSCVSPPQKCW**EKSTANFDWSTRWTWKS*LSRGGSTVCPQPKHC*SD*SQLHRKSLCSSWTTLSSKSDADTTPGASKEPAESAAWAVSPRHAAHEQHEC*SYGSKWRCRSSNAESSF*LNVAFSHKFSKPNDE*KCQCALPGSYANSSSTIHYWNSETVARRYYSGSSKSSCSQTRPSHISYAGSCCFKRQTDGKPSCICSES*RGHV*ICKQSSGILPPSS*ENL*DPERTRRKTKDQTTEAEHATKCCRHGSSFHESRA*HGTAATRNDF*WPST*PKYDPWQCAKPDDASNNSTIWFESIWPDEHGPAPYCTPANPSSSAPWTVGSTWSSQPAYGLWASYATAFQPGPVPSSDSVPITGNECNKYPFGSVQRSSSSVSSTNV*FFLPGELSYNASRVSGEPHSLSPASSTSSSSEFTLACT*SYPHPSPYSPKHRGSAATSNNNSSPCSYTSCHATWATVPGSTSPSKADTYTTNNTTSPTSAAFTSCCTFC*PAPAAASLTAEHSSVCSYPNSTAASSAACNSTFPASCKH*RTGIKSSIY**HRSEFSGHC*EAAFPGSEDGGQNGSGSTRTSRYSAGGYFRV*SGRL*NGIYRNRREKH*VKN*NKRGGRPAKYFSYPVISGSRTVKEKDFQTRRTTTGTDANFGGTLPSGSRIPSLSSTCGPSAFRNP*LL*YCEEPHGSFYH*EEVRHWTVSGALAVCR*YLAYVQ*CLVI*PENITGIQILLQAL*GL*TRN*PSDAKPWILLWQKVGVLSTDTVLLRQTVVHNTS*CHLLQLPEQVSFL*EVFQ*DPRGERFFGG*PFPASNYNK*RTIFQEKK*HTGS*TVC*MYRVRKKDASDLCPSP*DHLACWIRL*WLFKEKCTN*ERK*VFC*KVAIYQTWHLSRESCE*LSEATESP*VRRGHC*SSSCF*QNRGSKTRHESKVCGQWRDGRILSIPNQSPLCL*RN*WC*PVLLWHACSRVWL*LPSTQPEESIHILPR*CSFLPS*MLEDCSLS*NPNWIFRICQEIRLHNRAYLGMSTK*GR*LYLPLPSS*PEDTQAQATAGMVQKNA*QGCIRAYCP*LQGYF*TSY*R*INKCKGIALFRG*FLAQCSGRKH*GTGTGGRREKTRGKHQQ*KHRCDQGRQQKC*KEE**ENQQK*EQPE*GQQEETRDAQCI*RPLTETICHHGEA*RGLLCDPPHCWPCCQLPASHC*S*SSHPLRSDGWSGCVSHAGKGQAPGVLFTPKSPVVHHVHAGGAAHAEPGPLCLHLQ*MQAPCGDTLALYCL*GL*LVYHLL*H*KP*PQNGETRPWLR**EQQPAGCSHPEPRRFSPPEYPALHPVSGPCLPVSECQLLTAILPEDEAGCAAYQGLQTENQWRVPHLQAAHCPLLLPCQALPGEQMPGAVLPKHQAEAPAATAAAPTTAGPNASQEDGQHAADWCGWAATGPPFPHSCHSNDTNWPTANHPADAPAHFSASAYPSQ*HATLLAQDSSCWPCVPG*GSRPGDPSNPSSDCSATPSRAPTCSSGNGNADSESSGDAAPDGPRANFSKANPTPDAPDDSHGPHGYEPTSHDQRSQWAFGARDGTDRDAATATLEPRRIASAPATTVWDAKASHDVSGPAWSTFEHGSTTRIGPGRYQPTQTRHCVSTSLTKPFADSQVSQLSPAAATGA*YPSRQPPAVGCIHQAAGCQVCQL*STTHPWAAWHAPGAARATATYHARSAGGPLQSSHAEHESNAGGRSEGWPAPAATTAATPATHGRDEPPGSADEHEPQHHAFTIPRHLETTANDATAAATGSRARNRPWNGQP*PVPATPRSWLPTTAAAADAASHATDATRKYGTDRPASPGLGSRGRCQSTGLSAATPSATDGVPCSAQPHEPPAAYAPKSGPVPTPTRPADP*FSLQSSALSPACPFSTATVPAPPLQSFPKDAASAFSTPRFPTDKFPTSWTGSCPGQPHGTRAFCQPGPEFNAFSAC*QSRHGKPPWCKRHGPGTQHR*LRLEFKPLTEYTRHTL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 30135 CHMP1A::FANCA ENSG00000131165.16::ENSG00000187741.16 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 980 FALSE NA FALSE NA CHMP1A ENSG00000131165.16 protein_coding - - chr16:89640816-89657738:- chr16:89657582:- chr16:89707224-89724146:- chr16:89723990:- FANCA ENSG00000187741.16 protein_coding - - chr16:89726683-89816977:- chr16:89752222:- chr16:89793091-89883385:- chr16:89818630:- chr16:89657233 chr16:89757986 NA NA chr16:89723641 chr16:89824394 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["FANCA:Oncogene","FANCA:FoundationOne_panel","FANCA:ArcherDX_panel"];["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.08Mb];LOCAL_REARRANGEMENT:-:[79704] 12 17 12 15.66 ONLY_REF_SPLICE YES_LDAS 0.2471 GT 1.8892 AG 1.9329 ENST00000675536.1 1-7 ENST00000564475.6 2982-4392 chr16|-|[0]89657582-89657588[0]<==>chr16|-|[2]89738754-89738974[1]|[0]89739129-89739289[2]|[1]89739478-89739553[1]|[0]89739994-89740099[0]|[2]89740804-89740866[0]|[2]89742800-89742938[2]|[1]89744959-89745071[0]|[2]89746584-89746688[0]|[2]89746831-89746890[0]|[2]89748659-89748767[2]|[1]89749730-89749902[0]|[2]89752138-89752222[2] atggacgCTCAAGGAGTTATGACCACTCAGAAAATTCTGATTTGGTCTTTGGTGGCCGCACAGGAAATGAGGATATTATTTCCAGATTGCAGGAGATGGTAGCTGACCTGGAGCTGCAGCAAGACCTCATAGTGCCTCTCGGCCACACCCCTTCCCAGGAGCACTTCCTCTTTGAGATTTTCCGCAGACGGCTCCAGGCTCTGACAAGCGGGTGGAGCGTGGCTGCCAGCCTTCAGAGACAGAGGGAGCTGCTAATGTACAAACGGATCCTCCTCCGCCTGCCTTCGTCTGTCCTCTGCGGCAGCAGCTTCCAGGCAGAACAGCCCATCACTGCCAGATGCGAGCAGTTCTTCCACTTGGTCAACTCTGAGATGAGAAACTTCTGCTCCCACGGAGGTGCCCTGACACAGGACATCACTGCCCACTTCTTCAGGGGCCTCCTGAACGCCTGTCTGCGGAGCAGAGACCCCTCCCTGATGGTCGACTTCATACTGGCCAAGTGCCAGACGAAATGCCCCTTAATTTTGACCTCTGCTCTGGTGTGGTGGCCGAGCCTGGAGCCTGTGCTGCTCTGCCGGTGGAGGAGACACTGCCAGAGCCCGCTGCCCCGGGAACTGCAGAAGCTACAAGAAGGCCGGCAGTTTGCCAGCGATTTCCTCTCCCCTGAGGCTGCCTCCCCAGCACCCAACCCGGACTGGCTCTCAGCTGCTGCACTGCACTTTGCGATTCAACAAGTCAGGGAAGAAAACATCAGGAAGCAGCTAAAGAAGCTGGACTGCGAGAGAGAGGAGCTATTGGTTTTCCTTTTCTTCTTCTCCTTGATGGGCCTGCTGTCGTCACATCTGACCTCAAATAGCACCACAGACCTGCCAAAGGCTTTCCACGTTTGTGCAGCAATCCTCGAGTGTTTAGAGAAGAGGAAGATATCCTGGCTGGCACTCTTTCAGTTGACAGAGAGTGACCTCAGGCTGGGGCGGCTCCTCCTCCGTGTGGCCCCGGATCAGCACACCAGGCTGCTGCCTTTCGCTTTTTACAGTCTTCTCTCCTACTTCCATGAAGACGCGGCCATCAGGGAAGAGGCCTTCCTGCATGTTGCTGTGGACATGTACTTGAAGCTGGTCCAGCTCTTCGTGGCTGGGGATACAAGCACAGTTTCACCTCCAGCTGGCAGGAGCCTGGAGCTCAAGGGTCAGGCAGGGCAACCCCGTGGAACTGATAACAAAAGCTCGTCTTTTTCTGCTGCAGTTAATACCTCGGTGCCCGAAAAAGAGCTTCTCACACGTGGCAGAGGTAACGTCAAGATGCCCACCTTGGGCCATGTGGGGGACATGAGAATTGACAGCTGCCTGGGCCATGTGCCTGCCTGGCTGGCAATACAACTCGACTATTTCTGCCAGAGCCCCTCCCCTGTGGTCTGA MDAQGVMTTQKILIWSLVAAQEMRILFPDCRRW*LTWSCSKTS*CLSATPLPRSTSSLRFSADGSRL*QAGGAWLPAFRDRGSC*CTNGSSSACLRLSSAAAASRQNSPSLPDASSSSTWSTLR*ETSAPTEVP*HRTSLPTSSGAS*TPVCGAETPP*WSTSYWPSARRNAP*F*PLLWCGGRAWSLCCSAGGGDTARARCPGNCRSYKKAGSLPAISSPLRLPPQHPTRTGSQLLHCTLRFNKSGKKTSGSS*RSWTARERSYWFSFSSSP*WACCRHI*PQIAPQTCQRLSTFVQQSSSV*RRGRYPGWHSFS*QRVTSGWGGSSSVWPRISTPGCCLSLFTVFSPTSMKTRPSGKRPSCMLLWTCT*SWSSSSWLGIQAQFHLQLAGAWSSRVRQGNPVELITKARLFLLQLIPRCPKKSFSHVAEVTSRCPPWAMWGT*ELTAAWAMCLPGWQYNSTISARAPPLWS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma STOMACH,OESOPHAGUS no_match 89720312,89723990|89723990|89723990 FALSE,TRUE|TRUE|TRUE 89833645,89851372|89836667|89849510 FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group A 1 AML, leukaemia Fanconi anaemia A leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site 30137 BCL2L13::EP300 ENSG00000099968.18::ENSG00000100393.15 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 1719 TRUE 680 BCL2L13 ENSG00000099968.18 protein_coding + + chr22:17628855-17730855:+ chr22:17696210:+ chr22:18111621-18213621:+ chr22:18178976:+ EP300 ENSG00000100393.15 protein_coding + + chr22:41092592-41180077:+ chr22:41129890:+ chr22:41488596-41576081:+ chr22:41525894:+ chr22:17699746,chr22:17699745 chr22:41128012,chr22:41128008 NA NA chr22:18182512,chr22:18182511 chr22:41524016,chr22:41524012 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HSCB_C|67-103|0.00014^HSCB_C|126-163|0.33^CEND1|266-281|0.57^HSCB_C|371-405|0.055^CEND1|406-461|2.1e-07 RING_CBP-p300-PARTIAL|~1169-1195|1.1e-26^ZZ|1198-1207|0.27^ZZ|1270-1283|1.9^HAT_KAT11|1306-1611|4.9e-88^ZZ|1665-1705|3.3e-18^zf-TAZ|1669-1695|8.7^zf-TAZ|1735-1806|2.2e-15^ZZ|1779-1797|10^RING_CBP-p300|1787-1796|3.6^Creb_binding|1816-1865|10^Creb_binding|1918-1962|10^Creb_binding|1992-2098|3.3e-39^Npa1|2044-2089|5.4e-07^Creb_binding|2121-2187|10^Creb_binding|2164-2216|10^Creb_binding|2205-2261|10^Creb_binding|2233-2308|10 ["EP300:Oncogene","EP300:ArcherDX_panel","EP300:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:23.36Mb] 11 9 11 5.37 ONLY_REF_SPLICE YES_LDAS 0.1462 GT 1.8323 AG 1.9899 ENST00000611738.4 1-528 ENST00000263253.9 1169-7245 chr22|+|[0]17638694-17638886[0]|[1]17683214-17683321[0]|[1]17688986-17689142[1]|[2]17696141-17696210[2]<==>chr22|+|[1]41129890-41130003[0]|[1]41131388-41131633[0]|[1]41135813-41135906[1]|[2]41137653-41137790[1]|[2]41140140-41140257[2]|[0]41141048-41141222[0]|[1]41146739-41146816[0]|[1]41147837-41147946[2]|[0]41149038-41149175[2]|[0]41149761-41150198[2]|[0]41151833-41152012[2]|[0]41152206-41152350[0]|[1]41154995-41155113[2]|[0]41157169-41157408[2]|[0]41158412-41158500[1]|[2]41160642-41160722[1]|[2]41162723-41162779[1]|[2]41164053-41164130[1]|[2]41166599-41166666[0]|[1]41168449-41168599[1]|[2]41168721-41168867[1]|[2]41169503-41169616[1]|[2]41170406-41170571[2]|[0]41172499-41172663[2]|[0]41173623-41173784[2]|[0]41176247-41176528[2]|[0]41176773-41178956[2] atgtcaggtagttcaggtcccgccccgacgccggccgtgacgaaggcacgccggggtgacctcaccctccaacatggcggcggcggtagattagggccgcgggtcggagcactcaccgccgctgggggaccctgtcggaagcaactgccgccgccgcctctttcatctcttctggggcaggggccagggccaggggttcaactagatatagcttcacaatctctggatcaagaaattttattaaaagttaaaactgaaattgaagaagagctaaaatctctggacaaagaaatttctgaagccttcaccagcacaggctttgaccgtcacacttctccagtgttcagccctgccaatccagaaagctcaatggaagactgcttggcccatcttggagaaaaagtgtcccaggaactgaaagagcctctccataaagcattgcaaatgctcctgagccagccagtgacatatcaggcatttcgggaatgtacactggagaccacagttcatgccagcggctggaataagTGGCACACTGTGCATCTTCTCGACAAATCATTTCACACTGGAAGAATTGTACAAGACATGATTGTCCTGTGTGTCTCCCCCTCAAAAATGCTGGTGATAAGAGAAATCAACAGCCAATTTTGACTGGAGCACCCGTTGGACTTGGAAATCCTAGCTCTCTAGGGGTGGGTCAACAGTCTGCCCCCAACCTAAGCACTGTTAGTCAGATTGATCCCAGCTCCATAGAAAGAGCCTATGCAGCTCTTGGACTACCCTATCAAGTAAATCAGATGCCGACACAACCCCAGGTGCAAGCAAAGAACCAGCAGAATCAGCAGCCTGGGCAGTCTCCCCAAGGCATGCGGCCCATGAGCAACATGAGTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGAGTTCAAACGCCGAGTCTTCTTTCTGACTCAATGTTGCATTCAGCCATAAATTCTCAAAACCCAATGATGAGTGAAAATGCCAGTGTGCCCTCCCTGGGTCCTATGCCAACAGCAGCTCAACCATCCACTACTGGAATTCGGAAACAGTGGCACGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCACAAACTCGTCCAAGCCATATTTCCTACGCCGGATCCTGCTGCTTTAAAAGACAGACGGATGGAAAACCTAGTTGCATATGCTCGGAAAGTTGAAGGGGACATGTATGAATCTGCAAACAATCGAGCGGAATACTACCACCTTCTAGCTGAGAAAATCTATAAGATCCAGAAAGAACTAGAAGAAAAACGAAGGACCAGACTACAGAAGCAGAACATGCTACCAAATGCTGCAGGCATGGTTCCAGTTTCCATGAATCCAGGGCCTAACATGGGACAGCCGCAACCAGGAATGACTTCTAATGGCCCTCTACCTGACCCAAGTATGATCCGTGGCAGTGTGCCAAACCAGATGATGCCTCGAATAACTCCACAATCTGGTTTGAATCAATTTGGCCAGATGAGCATGGCCCAGCCCCCTATTGTACCCCGGCAAACCCCTCCTCTTCAGCACCATGGACAGTTGGCTCAACCTGGAGCTCTCAACCCGCCTATGGGCTATGGGCCTCGTATGCAACAGCCTTCCAACCAGGGCCAGTTCCTTCCTCAGACTCAGTTCCCATCACAGGGAATGAATGTAACAAATATCCCTTTGGCTCCGTCCAGCGGTCAAGCTCCAGTGTCTCAAGCACAAATGTCTAGTTCTTCCTGCCCGGTGAACTCTCCTATAATGCCTCCAGGGTCTCAGGGGAGCCACATTCACTGTCCCCAGCTTCCTCAACCAGCTCTTCATCAGAATTCACCCTCGCCTGTACCTAGTCGTACCCCCACCCCTCACCATACTCCCCCAAGCATAGGGGCTCAGCAGCCACCAGCAACAACAATTCCAGCCCCTGTTCCTACACCTCCTGCCATGCCACCTGGGCCACAGTCCCAGGCTCTACATCCCCCTCCAAGGCAGACACCTACACCACCAACAACACAACTTCCCCAACAAGTGCAGCCTTCACTTCCTGCTGCACCTTCTGCTGACCAGCCCCAGCAGCAGCCTCGCTCACAGCAGAGCACAGCAGCGTCTGTTCCTACCCCAACAGCACCGCTGCTTCCTCCGCAGCCTGCAACTCCACTTTCCCAGCCAGCTGTAAGCATTGAAGGACAGGTATCAAATCCTCCATCTACTAGTAGCACAGAAGTGAATTCTCAGGCCATTGCTGAGAAGCAGCCTTCCCAGGAAGTGAAGATGGAGGCCAAAATGGAAGTGGATCAACCAGAACCAGCAGATACTCAGCCGGAGGATATTTCAGAGTCTAAAGTGGAAGACTGTAAAATGGAATCTACCGAAACAGAAGAGAGAAGCACTGAGTTAAAAACTGAAATAAAAGAGGAGGAAGACCAGCCAAGTACTTCAGCTACCCAGTCATCTCCGGCTCCAGGACAGTCAAAGAAAAAGATTTTCAAACCAGAAGAACTACGACAGGCACTGATGCCAACTTTGGAGGCACTTTACCGTCAGGATCCAGAATCCCTTCCCTTTCGTCAACCTGTGGACCCTCAGCTTTTAGGAATCCCTGATTACTTTGATATTGTGAAGAGCCCCATGGATCTTTCTACCATTAAGAGGAAGTTAGACACTGGACAGTATCAGGAGCCCTGGCAGTATGTCGATGATATTTGGCTTATGTTCAATAATGCCTGGTTATATAACCGGAAAACATCACGGGTATACAAATACTGCTCCAAGCTCTCTGAGGTCTTTGAACAAGAAATTGACCCAGTGATGCAAAGCCTTGGATACTGTTGTGGCAGAAAGTTGGAGTTCTCTCCACAGACACTGTGTTGCTACGGCAAACAGTTGTGCACAATACCTCGTGATGCCACTTATTACAGTTACCAGAACAGGTATCATTTCTGTGAGAAGTGTTTCAATGAGATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAACTACAATAAATAAAGAACAATTTTCCAAGAGAAAAAATGACACACTGGATCCTGAACTGTTTGTTGAATGTACAGAGTGCGGAAGAAAGATGCATCAGATCTGTGTCCTTCACCATGAGATCATCTGGCCTGCTGGATTCGTCTGTGATGGCTGTTTAAAGAAAAGTGCACGAACTAGGAAAGAAAATAAGTTTTCTGCTAAAAGGTTGCCATCTACCAGACTTGGCACCTTTCTAGAGAATCGTGTGAATGACTTTCTGAGGCGACAGAATCACCCTGAGTCAGGAGAGGTCACTGTTAGAGTAGTTCATGCTTCTGACAAAACCGTGGAAGTAAAACCAGGCATGAAAGCAAGGTTTGTGGACAGTGGAGAGATGGCAGAATCCTTTCCATACCGAACCAAAGCCCTCTTTGCCTTTGAAGAAATTGATGGTGTTGACCTGTGCTTCTTTGGCATGCATGTTCAAGAGTATGGCTCTGACTGCCCTCCACCCAACCAGAGGAGAGTATACATATCTTACCTCGATAGTGTTCATTTCTTCCGTCCTAAATGCTTGAGGACTGCAGTCTATCATGAAATCCTAATTGGATATTTAGAATATGTCAAGAAATTAGGTTACACAACAGGGCATATTTGGGCATGTCCACCAAGTGAGGGAGATGATTATATCTTCCATTGCCATCCTCCTGACCAGAAGATACCCAAGCCCAAGCGACTGCAGGAATGGTACAAAAAAATGCTTGACAAGGCTGTATCAGAGCGTATTGTCCATGACTACAAGGATATTTTTAAACAAGCTACTGAAGATAGATTAACAAGTGCAAAGGAATTGCCTTATTTCGAGGGTGATTTCTGGCCCAATGTTCTGGAAGAAAGCATTAAGGAACTGGAACAGGAGGAAGAAGAGAGAAAACGAGAGGAAAACACCAGCAATGAAAGCACAGATGTGACCAAGGGAGACAGCAAAAATGCTAAAAAGAAGAATAATAAGAAAACCAGCAAAAATAAGAGCAGCCTGAGTAGGGGCAACAAGAAGAAACCCGGGATGCCCAATGTATCTAACGACCTCTCACAGAAACTATATGCCACCATGGAGAAGCATAAAGAGGTCTTCTTTGTGATCCGCCTCATTGCTGGCCCTGCTGCCAACTCCCTGCCTCCCATTGTTGATCCTGATCCTCTCATCCCCTGCGATCTGATGGATGGTCGGGATGCGTTTCTCACGCTGGCAAGGGACAAGCACCTGGAGTTCTCTTCACTCCGAAGAGCCCAGTGGTCCACCATGTGCATGCTGGTGGAGCTGCACACGCAGAGCCAGGACCGCTTTGTCTACACCTGCAATGAATGCAAGCACCATGTGGAGACACGCTGGCACTGTACTGTCTGTGAGGATTATGACTTGTGTATCACCTGCTATAACACTAAAAACCATGACCACAAAATGGAGAAACTAGGCCTTGGCTTAGATGATGAGAGCAACAACCAGCAGGCTGCAGCCACCCAGAGCCCAGGCGATTCTCGCCGCCTGAGTATCCAGCGCTGCATCCAGTCTCTGGTCCATGCTTGCCAGTGTCGGAATGCCAATTGCTCACTGCCATCCTGCCAGAAGATGAAGCGGGTTGTGCAGCATACCAAGGGTTGCAAACGGAAAACCAATGGCGGGTGCCCCATCTGCAAGCAGCTCATTGCCCTCTGCTGCTACCATGCCAAGCACTGCCAGGAGAACAAATGCCCGGTGCCGTTCTGCCTAAACATCAAGCAGAAGCTCCGGCAGCAACAGCTGCAGCACCGACTACAGCAGGCCCAAATGCTTCGCAGGAGGATGGCCAGCATGCAGCGGACTGGTGTGGTTGGGCAGCAACAGGGCCTCCCTTCCCCCACTCCTGCCACTCCAACGACACCAACTGGCCAACAGCCAACCACCCCGCAGACGCCCCAGCCCACTTCTCAGCCTCAGCCTACCCCTCCCAATAGCATGCCACCCTACTTGCCCAGGACTCAAGCTGCTGGCCCTGTGTCCCAGGGTAAGGCAGCAGGCCAGGTGACCCCTCCAACCCCTCCTCAGACTGCTCAGCCACCCCTTCCAGGGCCCCCACCTGCAGCAGTGGAAATGGCAATGCAGATTCAGAGAGCAGCGGAGACGCAGCGCCAGATGGCCCACGTGCAAATTTTTCAAAGGCCAATCCAACACCAGATGCCCCCGATGACTCCCATGGCCCCCATGGGTATGAACCCACCTCCCATGACCAGAGGTCCCAGTGGGCATTTGGAGCCAGGGATGGGACCGACAGGGATGCAGCAACAGCCACCCTGGAGCCAAGGAGGATTGCCTCAGCCCCAGCAACTACAGTCTGGGATGCCAAGGCCAGCCATGATGTCAGTGGCCCAGCATGGTCAACCTTTGAACATGGCTCCACAACCAGGATTGGGCCAGGTAGGTATCAGCCCACTCAAACCAGGCACTGTGTCTCAACAAGCCTTACAAAACCTTTTGCGGACTCTCAGGTCTCCCAGCTCTCCCCTGCAGCAGCAACAGGTGCTTAGTATCCTTCACGCCAACCCCCAGCTGTTGGCTGCATTCATCAAGCAGCGGGCTGCCAAGTATGCCAACTCTAATCCACAACCCATCCCTGGGCAGCCTGGCATGCCCCAGGGGCAGCCAGGGCTACAGCCACCTACCATGCCAGGTCAGCAGGGGGTCCACTCCAATCCAGCCATGCAGAACATGAATCCAATGCAGGCGGGCGTTCAGAGGGCTGGCCTGCCCCAGCAGCAACCACAGCAGCAACTCCAGCCACCCATGGGAGGGATGAGCCCCCAGGCTCAGCAGATGAACATGAACCACAACACCATGCCTTCACAATTCCGAGACATCTTGAGACGACAGCAAATGATGCAACAGCAGCAGCAACAGGGAGCAGGGCCAGGAATAGGCCCTGGAATGGCCAACCATAACCAGTTCCAGCAACCCCAAGGAGTTGGCTACCCACCACAGCAGCAGCAGCGGATGCAGCATCACATGCAACAGATGCAACAAGGAAATATGGGACAGATAGGCCAGCTTCCCCAGGCCTTGGGAGCAGAGGCAGGTGCCAGTCTACAGGCCTATCAGCAGCGACTCCTTCAGCAACAGATGGGGTCCCCTGTTCAGCCCAACCCCATGAGCCCCCAGCAGCATATGCTCCCAAATCAGGCCCAGTCCCCACACCTACAAGGCCAGCAGATCCCTAATTCTCTCTCCAATCAAGTGCGCTCTCCCCAGCCTGTCCCTTCTCCACGGCCACAGTCCCAGCCCCCCCACTCCAGTCCTTCCCCAAGGATGCAGCCTCAGCCTTCTCCACACCACGTTTCCCCACAGACAAGTTCCCCACATCCTGGACTGGTAGCTGCCCAGGCCAACCCCATGGAACAAGGGCATTTTGCCAGCCCGGACCAGAATTCAATGCTTTCTCAGCTTGCTAGCAATCCAGGCATGGCAAACCTCCATGGTGCAAGCGCCACGGACCTGGGACTCAGCACCGATAACTCAGACTTGAATTCAAACCTCTCACAGAGTACACTAGACATACACTAG MSGSSGPAPTPAVTKARRGDLTLQHGGGGRLGPRVGALTAAGGPCRKQLPPPPLSSLLGQGPGPGVQLDIASQSLDQEILLKVKTEIEEELKSLDKEISEAFTSTGFDRHTSPVFSPANPESSMEDCLAHLGEKVSQELKEPLHKALQMLLSQPVTYQAFRECTLETTVHASGWNKWHTVHLLDKSFHTGRIVQDMIVLCVSPSKMLVIREINSQF*LEHPLDLEILAL*GWVNSLPPT*ALLVRLIPAP*KEPMQLLDYPIK*IRCRHNPRCKQRTSRISSLGSLPKACGP*AT*VLVLWE*MEV*EFKRRVFFLTQCCIQP*ILKTQ**VKMPVCPPWVLCQQQLNHPLLEFGNSGTKILLRIFEIILFTNSSKPYFLRRILLL*KTDGWKT*LHMLGKLKGTCMNLQTIERNTTTF*LRKSIRSRKN*KKNEGPDYRSRTCYQMLQAWFQFP*IQGLTWDSRNQE*LLMALYLTQV*SVAVCQTR*CLE*LHNLV*INLAR*AWPSPLLYPGKPLLFSTMDSWLNLELSTRLWAMGLVCNSLPTRASSFLRLSSHHRE*M*QISLWLRPAVKLQCLKHKCLVLPAR*TLL*CLQGLRGATFTVPSFLNQLFIRIHPRLYLVVPPPLTILPQA*GLSSHQQQQFQPLFLHLLPCHLGHSPRLYIPLQGRHLHHQQHNFPNKCSLHFLLHLLLTSPSSSLAHSRAQQRLFLPQQHRCFLRSLQLHFPSQL*ALKDRYQILHLLVAQK*ILRPLLRSSLPRK*RWRPKWKWINQNQQILSRRIFQSLKWKTVKWNLPKQKREALS*KLK*KRRKTSQVLQLPSHLRLQDSQRKRFSNQKNYDRH*CQLWRHFTVRIQNPFPFVNLWTLSF*ESLITLIL*RAPWIFLPLRGS*TLDSIRSPGSMSMIFGLCSIMPGYITGKHHGYTNTAPSSLRSLNKKLTQ*CKALDTVVAESWSSLHRHCVATANSCAQYLVMPLITVTRTGIISVRSVSMRSKGRAFLWGMTLPSLKLQ*IKNNFPREKMTHWILNCLLNVQSAEERCIRSVSFTMRSSGLLDSSVMAV*RKVHELGKKISFLLKGCHLPDLAPF*RIV*MTF*GDRITLSQERSLLE*FMLLTKPWK*NQA*KQGLWTVERWQNPFHTEPKPSLPLKKLMVLTCASLACMFKSMALTALHPTRGEYTYLTSIVFISSVLNA*GLQSIMKS*LDI*NMSRN*VTQQGIFGHVHQVREMIISSIAILLTRRYPSPSDCRNGTKKCLTRLYQSVLSMTTRIFLNKLLKID*QVQRNCLISRVISGPMFWKKALRNWNRRKKRENERKTPAMKAQM*PRETAKMLKRRIIRKPAKIRAA*VGATRRNPGCPMYLTTSHRNYMPPWRSIKRSSL*SASLLALLPTPCLPLLILILSSPAI*WMVGMRFSRWQGTSTWSSLHSEEPSGPPCACWWSCTRRARTALSTPAMNASTMWRHAGTVLSVRIMTCVSPAITLKTMTTKWRN*ALA*MMRATTSRLQPPRAQAILAA*VSSAASSLWSMLASVGMPIAHCHPARR*SGLCSIPRVANGKPMAGAPSASSSLPSAATMPSTARRTNARCRSA*TSSRSSGSNSCSTDYSRPKCFAGGWPACSGLVWLGSNRASLPPLLPLQRHQLANSQPPRRRPSPLLSLSLPLPIACHPTCPGLKLLALCPRVRQQAR*PLQPLLRLLSHPFQGPHLQQWKWQCRFREQRRRSARWPTCKFFKGQSNTRCPR*LPWPPWV*THLP*PEVPVGIWSQGWDRQGCSNSHPGAKEDCLSPSNYSLGCQGQP*CQWPSMVNL*TWLHNQDWAR*VSAHSNQALCLNKPYKTFCGLSGLPALPCSSNRCLVSFTPTPSCWLHSSSSGLPSMPTLIHNPSLGSLACPRGSQGYSHLPCQVSRGSTPIQPCRT*IQCRRAFRGLACPSSNHSSNSSHPWEG*APRLSR*T*TTTPCLHNSETS*DDSK*CNSSSNREQGQE*ALEWPTITSSSNPKELATHHSSSSGCSITCNRCNKEIWDR*ASFPRPWEQRQVPVYRPISSDSFSNRWGPLFSPTP*APSSICSQIRPSPHTYKASRSLILSPIKCALPSLSLLHGHSPSPPTPVLPQGCSLSLLHTTFPHRQVPHILDW*LPRPTPWNKGILPARTRIQCFLSLLAIQAWQTSMVQAPRTWDSAPITQT*IQTSHRVH*TYT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE 300 kd E1A-Binding protein gene 1 Yes colorectal, breast, pancreatic, AML, ALL, DLBCL leukaemia_lymphoma, epithelial TSG, fusion translocation, nonsense, frameshift, missense, other 30140 ZDHHC9::ENSG00000235189 ENSG00000188706.13::ENSG00000235189.2 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC9 ENSG00000188706.13 protein_coding - - chrX:129803288-129843909:- chrX:129841779:- chrX:128937264-128977885:- chrX:128975755:- ENSG00000235189 ENSG00000235189.2 lncRNA - - chrX:129869064-129957528:- chrX:129929895:- chrX:129003040-129091504:- chrX:129063871:- chrX:129840675,chrX:129840679 chrX:129931709,chrX:129931710 NA NA chrX:128974651,chrX:128974655 chrX:129065685,chrX:129065686 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1251 GT 1.6895 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30142 ENSG00000227775::PRKCZ ENSG00000227775.3::ENSG00000067606.17 EBC1 SRR8615634 SRR8639150 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 981 FALSE NA FALSE NA ENSG00000227775 ENSG00000227775.3 transcribed_processed_pseudogene + + chr1:1724512-1737251:+ chr1:1724763:+ chr1:1655951-1668690:+ chr1:1656202:+ PRKCZ ENSG00000067606.17 protein_coding + + chr1:2050411-2185395:+ chr1:2098347:+ chr1:1981850-2116834:+ chr1:2029786:+ chr1:1725252 chr1:2097809 NA NA chr1:1656691 chr1:2029248 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 8 9 8 ONLY_REF_SPLICE YES_LDAS 0.1518 GT 1.8323 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein kinase C zeta type AGC PKC PKCi Q05513 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30147 NEK8::SUPT6H ENSG00000160602.14::ENSG00000109111.15 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 986 TRUE 1728 TRUE 684 NEK8 ENSG00000160602.14 protein_coding + + chr17:28725897-28743455:+ chr17:28728860:+ chr17:27052915-27070473:+ chr17:27055878:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28681256:+ chr17:26989216-27029697:+ chr17:27008274:+ chr17:28733962,chr17:28733962 chr17:28680124,chr17:28680121 NA NA chr17:27060980,chr17:27060980 chr17:27007142,chr17:27007139 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|4-47~|1.9e-69^PK_Tyr_Ser-Thr-PARTIAL|7-47~|7.4e-48^APH-PARTIAL|46-47~|0.016 SH2_2-PARTIAL|~1350-1514|1.3e-80^SH2-PARTIAL|~1350-1415|1e-07 ["DepMap2023"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_REARRANGEMENT:+:[23213] 19 0 19 0 ONLY_REF_SPLICE YES_LDAS 0.1918 GT 1.8295 AG 1.9899 ENST00000543014.1 1-47 ENST00000314616.11 1350-5181 chr17|+|[0]28728814-28728860[1]<==>chr17|+|[2]28681256-28681404[0]|[1]28681882-28681980[0]|[1]28682727-28682856[1]|[2]28682942-28683092[2]|[0]28683268-28683422[1]|[2]28683621-28683816[2]|[0]28684586-28684725[1]|[2]28684844-28684961[2]|[0]28686339-28686415[1]|[2]28686654-28686789[2]|[0]28687088-28687225[2]|[0]28687304-28687471[2]|[0]28688091-28688218[1]|[2]28689354-28689561[2]|[0]28690082-28690229[0]|[1]28690921-28691063[2]|[0]28693696-28693836[2]|[0]28695352-28695547[0]|[1]28696844-28697082[2]|[0]28697620-28697733[2]|[0]28697906-28698030[1]|[2]28699781-28699893[0]|[1]28700173-28700250[0]|[1]28700346-28700512[2]|[0]28700941-28701128[1]|[2]28701439-28701625[2] atggagaagtacgagcggatccgagtggtggggagaggtgccttcggGCTCAAGGATGTCCAATCAATGGATGAGCTGAAAGATGTCTACAACCATTTTCTTCTTTATTATGGCCGAGACATCCCTAAGATGCAGAACGCCGCCAAAGCTAGCCGCAAGAAGCTGAAGCGTGTCAGGGAAGAGGGAGATGAAGAAGGTGAAGGTGACGAGGCAGAAGATGAGGAGCAGAGGGGGCCTGAGCTCAAGCAAGCCTCTCGCCGAGACATGTACACCATCTGCCAGAGTGCTGGGCTAGATGGCCTGGCCAAAAAGTTTGGGCTTACTCCCGAGCAGTTTGGGGAGAACCTGCGGGATAGCTACCAGCGGCACGAGACAGAGCAGTTTCCCGCGGAGCCCTTGGAGCTGGCCAAGGATTACGTTTGCAGCCAGTTCCCTACTCCAGAAGCTGTGCTAGAAGGCGCCCGCTACATGGTAGCCCTGCAGATTGCCCGTGAGCCCCTTGTCCGGCAGGTGCTGAGGCAAACCTTCCAAGAGAGAGCCAAGTTAAATATAACCCCCACCAAGAAAGGTAGAAAGGATGTGGATGAGGCCCACTATGCCTATTCCTTCAAGTATTTAAAGAACAAGCCTGTTAAGGAACTGAGAGATGACCAGTTTCTCAAGATATGCCTGGCTGAAGACGAAGGGCTCCTCACCACTGACATCAGCATAGATTTGAAGGGAGTGGAAGGCTATGGCAACGACCAGACATATTTTGAGGAGATAAAACAGTTTTACTACCGAGATGAGTTCAGCCACCAGGTGCAGGAGTGGAACCGGCAGCGCACCATGGCCATCGAACGGGCTTTACAGCAGTTCCTCTATGTGCAGATGGCCAAAGAACTCAAGAACAAGCTGCTGGCTGAAGCCAAGGAATATGTCATAAAGGCCTGTAGTCGAAAGCTCTACAATTGGTTGAGAGTGGCACCCTACCGACCAGATCAGCAGGTGGAAGAAGATGACGACTTTATGGACGAGAACCAAGGGAAGGGCATTCGAGTCCTCGGCATTGCTTTCTCCTCTGCCAGAGATCACCCTGTGTTCTGCGCCCTGGTCAATGGTGAAGGAGAAGTGACAGACTTCCTTCGACTGCCCCATTTTACCAAACGGCGAACTGCATGGAGAGAGGAAGAGCGGGAAAAGAAGGCTCAAGACATTGAAACGCTAAAGAAATTTCTCCTGAATAAGAAGCCTCATGTAGTGACAGTTGCAGGAGAGAACAGGGACGCCCAGATGTTGATTGAAGATGTGAAGCGCATTGTACATGAGCTGGACCAGGGCCAGCAGCTGTCATCTATTGGGGTAGAGCTGGTTGACAACGAGTTGGCCATTCTCTATATGAACAGCAAGAAGTCAGAGGCAGAGTTCCGGGATTATCCTCCAGTGCTGAGACAGGCCGTCTCCCTGGCCCGGCGCATCCAGGACCCTCTGATTGAATTTGCCCAGGTGTGCAGTTCCGATGAAGACATCCTGTGTCTCAAGTTTCACCCCTTGCAGGAGCATGTGGTGAAAGAGGAGCTGCTCAACGCCTTGTACTGTGAATTTATCAACCGAGTCAATGAGGTCGGGGTCGATGTCAACCGTGCCATTGCCCACCCTTACAGCCAGGCCTTGATCCAGTATGTTTGTGGCCTGGGACCTCGGAAAGGGACCCACCTCCTGAAGATCCTGAAGCAGAACAACACCCGGCTCGAGAGCCGGACCCAGCTGGTCACCATGTGCCACATGGGTCCCAAAGTCTTCATGAATTGTGCTGGCTTCCTCAAGATCGACACGGCCTCCCTGGGGGACAGCACTGACTCATATATTGAAGTCCTTGATGGTTCCCGTGTCCACCCTGAGACTTATGAGTGGGCTAGGAAGATGGCAGTGGATGCCCTGGAATACGATGAATCAGCCGAGGATGCCAATCCTGCAGGAGCCCTTGAAGAAATCTTGGAAAACCCAGAGCGACTGAAAGACCTGGACCTTGATGCCTTTGCAGAAGAGCTGGAGAGGCAGGGCTATGGTGACAAACACATCACACTCTATGACATCCGGGCAGAGCTGAGCTGTCGATATAAGGACCTCCGGACAGCCTACCGCTCTCCCAACACAGAGGAGATCTTCAATATGTTAACCAAAGAAACACCAGAGACCTTCTACATTGGAAAGCTCATCATCTGCAATGTCACTGGCATTGCCCACAGGCGTCCCCAGGGTGAGAGCTATGACCAGGCGATCCGCAATGATGAGACAGGGCTGTGGCAGTGCCCCTTCTGTCAGCAGGACAATTTCCCTGAACTAAGCGAGGTGTGGAACCACTTTGACAGCGGTTCGTGCCCAGGCCAGGCCATCGGTGTCAAAACACGGCTAGACAATGGTGTCACCGGCTTCATCCCCACCAAATTCCTCAGTGACAAAGTGGTAAAGCGGCCAGAAGAACGAGTGAAGGTGGGAATGACTGTTCACTGCCGCATCATGAAGATTGACATTGAGAAGTTCAGTGCAGACCTGACCTGCCGCACCTCAGACCTCATGGACAGGAACAATGAGTGGAAGCTGCCCAAAGACACCTACTATGACTTTGATGCTGAAGCTGCAGACCACAAGCAGGAGGAGGACATGAAGCGGAAGCAGCAGCGGACCACATACATCAAGAGAGTGATCGCACACCCATCCTTCCATAATATCAATTTCAAGCAAGCAGAAAAGATGATGGAGACCATGGACCAGGGTGATGTGATTATCCGACCAAGCAGCAAGGGCGAGAACCACCTGACAGTGACCTGGAAAGTCAGTGATGGCATCTACCAGCATGTGGATGTGCGGGAGGAGGGCAAGGAAAATGCCTTCAGCCTGGGAGCCACTCTGTGGATCAACAGTGAGGAATTCGAAGATTTGGATGAGATTGTTGCTCGCTATGTCCAGCCCATGGCATCCTTTGCCCGGGACCTTCTGAATCACAAGTATTATCAGGACTGCAGCGGTGGGGACCGCAAGAAATTAGAGGAGCTGCTCATCAAAACTAAGAAGGAGAAGCCCACCTTCATCCCTTATTTCATCTGTGCCTGCAAGGAACTGCCCGGCAAGTTCCTACTGGGATACCAGCCCCGGGGTAAACCCAGGATAGAATATGTAACGGTGACTCCAGAGGGATTCCGGTACCGGGGCCAGATCTTCCCAACCGTGAATGGACTGTTTAGATGGTTTAAGGATCACTACCAGGATCCTGTACCAGGCATCACCCCTAGCAGCAGCAGCAGGACCCGGACACCTGCCTCTATCAATGCTACCCCAGCCAACATCAACCTTGCAGATCTGACACGGGCTGTGAATGCCCTGCCTCAGAACATGACTTCACAGATGTTCAGTGCCATTGCTGCGGTGACAGGCCAAGGACAGAACCCTAATGCCACCCCAGCCCAGTGGGCCTCCAGCCAGTACGGCTATGGCGGCAGTGGAGGCGGCAGCAGTGCTTACCACGTATTCCCAACGCCAGCCCAGCAGCCAGTGGCCACACCACTAATGACCCCTAGCTACTCCTACACGACCCCAAGCCAGCCCATCACCACCCCTCAGTACCACCAGCTCCAGGCCAGCACCACCCCACAGTCGGCCCAGGCCCAGCCCCAGCCCTCTTCCAGCTCCCGGCAACGGCAGCAGCAGCCAAAGTCCAACAGCCATGCAGCCATCGACTGGGGAAAAATGGCGGAGCAGTGGCTGCAGGAAAAGGAGGCAGAACGGCGGAAACAGAAGCAGCGGCTGACACCTCGGCCCTCCCCCAGCCCCATGATCGAAAGCACCCCCATGTCCATTGCTGGCGATGCCACCCCACTCCTGGACGAGATGGATCGGTAG MEKYERIRVVGRGAFGLKDVQSMDELKDVYNHFLLYYGRDIPKMQNAAKASRKKLKRVREEGDEEGEGDEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREPLVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAEDEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQFLYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIRVLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFLLNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSEAEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTMCHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTAYRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVGMTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQHVDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDRKKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQIFPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMTSQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPSYSYTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase Nek8 Other NEK Q86SG6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30149 NEK8::SUPT6H ENSG00000160602.14::ENSG00000109111.15 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 985 TRUE 1728 TRUE 684 NEK8 ENSG00000160602.14 protein_coding + + chr17:28725897-28743455:+ chr17:28725972:+ chr17:27052915-27070473:+ chr17:27052990:+ SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28681256:+ chr17:26989216-27029697:+ chr17:27008274:+ chr17:28733962,chr17:28733962 chr17:28680124,chr17:28680121 NA NA chr17:27060980,chr17:27060980 chr17:27007142,chr17:27007139 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_REARRANGEMENT:+:[23213] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.111 GT 1.9086 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Nek8 Other NEK Q86SG6 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30150 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 A2058 SRR8615637 SRR8639131 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60686962:- chr5:59892739-59996017:- chr5:59982789:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60787431:- chr5:60047618-60140101:- chr5:60083258:- chr5:60672692 chr5:60789155 NA NA chr5:59968519 chr5:60084982 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.05Mb];LOCAL_REARRANGEMENT:-:[51601] 10 3 10 3 ONLY_REF_SPLICE YES_LDAS 0.1312 GT 1.9329 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 TRUE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30159 KCNMA1::DLG5 ENSG00000156113.25::ENSG00000151208.17 A204 SRR8615638 SRR8639132 SOFT_TISSUE rhabdoid_tumour primary star-fusion TRUE TRUE TRUE 990 FALSE NA FALSE NA KCNMA1 ENSG00000156113.25 protein_coding - - chr10:76869601-77638369:- chr10:77637265:- chr10:78629359-79398127:- chr10:79397023:- DLG5 ENSG00000151208.17 protein_coding - - chr10:77790791-77926755:- chr10:77869197:- chr10:79550549-79686513:- chr10:79628955:- chr10:77509387,chr10:77509389,chr10:77509389 chr10:77902886,chr10:77902885,chr10:77902978 NA NA chr10:79269145,chr10:79269147,chr10:79269147 chr10:79662644,chr10:79662643,chr10:79662736 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ion_trans_2|170-196|0.12^Ion_trans-PARTIAL|181-378~|7.2e-28^Ion_trans_2-PARTIAL|307-378~|3.1e-18 Takusan|340-360|2.5^Takusan|387-453|0.026^Takusan|477-509|0.14^Takusan|572-609|3.9^Guanylate_kin|572-616|0.12^PDZ|634-706|1.3e-10^PDZ_2|644-696|0.0018^DUF6288|654-695|9.3e-05^PDZ_6|655-708|1.6e-09^PDZ|722-792|1.9e-13^PDZ_2|734-784|1.9e-08^PDZ_6|741-788|4.5e-12^DUF6288|742-770|0.00068^dbPDZ_assoc|1302-1313|4.9^PDZ|1351-1424|5.4e-15^PDZ_2|1360-1413|9.5e-07^PDZ_6|1374-1414|1.7e-09^dbPDZ_assoc|1427-1486|3.6e-30^Guanylate_kin|1495-1509|1.5^PDZ|1505-1579|4.1e-08^PDZ_2|1521-1579|3.6e-06^PDZ_6|1526-1569|8.2e-05^DUF6288|1526-1537|1.3^SH3_2|1597-1636|0.00016^SH3_1|1599-1622|0.00012^Guanylate_kin|1775-1906|1.5e-18 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.15Mb] 6 3 6 2.42 ONLY_REF_SPLICE YES_LDAS 0.1183 GT 1.3996 AG 1.9656 ENST00000639486.1 1-378 ENST00000372391.7 305-5760 chr10|-|[2]77637265-77637642[0]<==>chr10|-|[2]77792440-77792543[1]|[0]77794008-77794117[2]|[1]77794849-77794958[0]|[2]77796061-77796188[1]|[0]77796451-77796594[1]|[0]77805665-77805861[2]|[1]77806758-77806928[2]|[1]77807796-77807944[0]|[2]77809547-77809730[2]|[1]77811094-77811234[2]|[1]77811924-77812057[0]|[2]77812215-77812377[2]|[1]77816551-77816701[1]|[0]77817007-77817096[1]|[0]77817777-77817889[2]|[1]77819321-77819465[1]|[0]77819895-77820018[0]|[2]77821082-77822101[0]|[2]77824384-77824476[0]|[2]77828882-77828985[1]|[0]77829355-77829530[2]|[1]77830217-77830344[0]|[2]77830741-77830873[2]|[1]77833914-77834039[2]|[1]77835738-77835922[0]|[2]77841881-77842193[2]|[1]77843447-77843706[0]|[2]77853354-77853537[2]|[1]77854227-77854370[2]|[1]77856730-77856892[1]|[0]77869129-77869197[1] atggcaaatggtggcggcggcggcggcggcagcagcggcggcggcggcggcggcggaggcagcagtcttagaatgagtagcaatatccacgcgaaccatctcagcctagacgcgtcctcctcctcctcctcctcctcttcctcttcttcttcttcctcctcctcttcctcctcgtcctcggtccacgagcccaagatggatgcgctcatcatcccggtgaccatggaggtgccgtgcgacagccggggccaacgcatgtggtgggctttcctggcctcctccatggtgactttcttcgggggcctcttcatcatcttgctctggcggacgctcaagtacctgtggaccgtgtgctgccactgcgggggcaagacgaagGTTCTACCTACAGCGTCCTGTCCACCATGCCCTCAGACTCAGAAAGCAGCAGCTCCCTCAGCAGTGTGGGCACTACCGGGAAGGCGCCGTCCCCACCACCCCTCCTCACTGACCAGCAAGTGAATGAGAAGGTGGAGAACCTCTCCATTCAGCTGCGGCTGATGACCCGGGAGAGAAACGAGCTCCGCAAGCGCCTGGCCTTTGCTACGCATGGCACGGCCTTTGACAAGAGGCCCTACCACAGGCTGAATCCTGACTATGAGAGGCTGAAGATCCAGTGCGTGCGAGCCATGTCGGACCTGCAGAGCCTGCAGAACCAGCACACCAACGCCTTGAAGAGGTGTGAGGAGGTGGCCAAGGAGACTGACTTCTACCACACACTCCACAGCCGGCTCCTGAGTGACCAGACTCGGCTGAAGGATGACGTGGACATGCTGAGGCGGGAGAATGGGCAGCTGCTGCGGGAGCGAAACCTGCTGCAGCAGTCATGGGAGGACATGAAGCGGCTCCACGAGGAGGACCAGAAGGAGATCGGTGACCTCCGTGCCCAGCAGCAGCAGGTGTTGAAGCACAACGGGTCATCCGAGATTCTCAACAAACTGTATGACACGGCCATGGACAAGTTGGAGGTGGTCAAGAAGGACTATGACGCCCTTCGGAAGAGGTACAGTGAGAAAGTCGCCATCCACAATGCAGACCTGAGCCGCCTGGAGCAGCTGGGGGAGGAGAACCAGCGGTTGCTGAAGCAGACAGAGATGCTGACCCAGCAGAGGGACACGGCCATCCAGCTGCAGCACCAGTGCGCCCTCTCCCTGAGGAGGTTTGAGGCGATCCACCATGAGCTGAACAAGGCCACGGCGCAGAACAAGGACCTGCAGTGGGAGATGGAGCTGCTGCAGTCAGAGCTGACCGAGCTGAGAACCACGCAGGTGAAGACAGCAAAGGAGTCGGAGAAATACAGGGAGGAGCGGGACGCTGTGTACAGCGAGTACAAGCTCATCATGAGTGAGCGTGACCAGGTCATCTCTGAGCTGGACAAGCTGCAGACCGAAGTGGAGCTGGCCGAGTCCAAGCTCAAGAGCAGCACATCTGAGAAGAAGGCGGCCAATGAGGAGATGGAGGCGCTGCGGCAGATCAAAGACACGGTGACAATGGATGCTGGGAGAGCCAACAAGGAGGTTGAAATCCTTCGAAAGCAGTGCAAGGCTCTGTGCCAGGAGCTGAAGGAAGCCCTCCAGGAGGCGGATGTGGCCAAGTGCCGGCGGGACTGGGCCTTCCAGGAGCGAGACAAGATTGTAGCAGAGCGTGACAGCATCCGGACACTGTGTGACAACCTGAGGCGGGAGCGGGACCGTGCGGTGAGCGAGCTGGCTGAGGCCCTGCGCAGCCTGGATGACACCCGCAAGCAGAAGAATGATGTCAGCCGCGAGCTGAAGGAGCTCAAGGAACAGATGGAATCCCAGTTGGAAAAGGAGGCCCGGTTCCGACAGCTGATGGCCCACAGCTCCCACGACTCGGCCATTGACACGGATTCCATGGAGTGGGAAACGGAAGTTGTAGAGTTCGAGAGGGAGACGGAGGATATTGACTTGAAGGCACTGGGGTTTGATATGGCAGAAGGTGTGAATGAGCCTTGTTTCCCGGGGGACTGTGGCATATTTGTCACTAAAGTGGACAAAGGAAGCATTGCTGATGGCCGCTTAAGGGTCAATGACTGGCTGCTGAGAATCAACGATGTGGACCTCATCAACAAGGACAAGAAGCAGGCCATCAAGGCGCTCCTCAATGGGGAGGGGGCCATCAACATGGTCGTGCGGCGGAGGAAGTCCCTGGGTGGGAAGGTGGTCACGCCGCTGCACATCAACCTCAGTGGACAGAAAGACAGTGGCATCAGTCTGGAGAATGGAGTGTATGCTGCCGCTGTGCTGCCTGGAAGCCCTGCCGCTAAAGAAGGGTCCCTTGCTGTGGGAGACAGGATCGTTGCGATCAATGGCATTGCACTGGACAACAAGTCTCTGAATGAATGTGAATCTCTGCTGCGCAGCTGCCAGGACTCCCTGACCCTGTCCCTCCTGAAGGTATTCCCTCAGAGCTCCTCGTGGAGTGGCCAGAACATTTTTGAAAATATCAAAGACTCTGATAAGATGCTGAGTTTTCGAGCCCATGGCCCGGAGGTCCAGGCTCATAACAAACGGAACTTGATACAGCACAATAACTCCACGCAGACAGACATCTTCTACACGGACAGGCTGGAAGACAGGAAGGAGCCAGGCCCCCCAGGAGGCAGCAGCTCCTTTCTGCATAAGCCATTCCCTGGGGGACCCTTGCAGGTCTGCCCCCAGGCCTGTCCCAGTGCCTCTGAGCGTAGCCTGAGCTCCTTCCGCTCAGATGCCTCTGGGGACCGTGGCTTTGGGCTGGTGGACGTGCGTGGCCGGCGGCCACTGCTGCCCTTTGAGACCGAGGTGGGCCCCTGTGGGGTTGGGGAGGCCTCCCTGGACAAGGCAGACTCTGAAGGCTCCAACAGCGGCGGGACCTGGCCCAAGGCCATGCTCAGCTCCACGGCAGTGCCTGAGAAGCTCTCTGTTTATAAAAAGCCAAAGCAAAGAAAGTCCATCTTTGACCCTAACACTTTCAAACGCCCCCAGACACCCCCCAAAATAGACTACCTGCTTCCAGGTCCTGGGCCTGCTCACTCTCCCCAGCCCTCCAAGAGGGCGGGGCCTCTGACACCCCCAAAACCTCCCAGAAGGAGCGACTCCATTAAGTTCCAGCACAGGCTGGAGACTAGCTCCGAGTCAGAAGCCACTCTGGTGGGCAGCTCCCCATCCACTAGTCCCCCGAGCGCCCTGCCCCCTGACGTGGACCCCGGGGAGCCCATGCACGCATCACCCCCTCGCAAGGCCAGGGTCCGCATTGCTTCCAGCTACTACCCTGAAGGAGATGGGGACTCCTCCCACCTGCCGGCCAAGAAATCCTGTGATGAGGACCTCACCTCCCAGAAGGTGGATGAGCTGGGGCAGAAGCGTCGCCGGCCAAAATCTGCTCCCAGTTTTCGGCCGAAGCTTGCTCCAGTAGTGATTCCTGCTCAGTTCCTGGAGGAACAGAAGTGTGTCCCGGCCAGTGGAGAACTCTCCCCGGAGCTCCAGGAGTGGGCACCTTACTCGCCTGGGCATTCCAGCCGGCACAGCAACCCCCCGCTATACCCTAGCAGGCCGTCTGTGGGCACTGTTCCCCGGAGTTTGACCCCCAGCACCACTGTGAGCTCCATCCTGCGGAACCCCATCTACACTGTGCGCAGTCACAGGGTCGGCCCCTGCAGCTCTCCACCTGCGGCCCGAGATGCTGGCCCCCAGGGTTTGCATCCCAGTGTCCAGCACCAGGGACGCCTGAGCCTGGACCTGAGCCACAGGACCTGCAGCGACTACTCCGAGATGAGAGCCACCCATGGGTCCAACTCACTGCCCTCCAGCGCCCGCCTGGGTTCTTCGAGTAACTTGCAGTTCAAGGCGGAACGCATTAAAATCCCATCAACACCAAGATATCCGCGGAGTGTCGTGGGCTCCGAGAGAGGTTCAGTGTCACATTCTGAATGCAGCACTCCTCCACAGTCACCCCTGAACATCGACACCCTGTCCTCTTGTAGCCAGTCCCAGACCTCAGCCTCCACATTGCCCAGAATCGCTGTCAACCCCGCGTCCCTCGGGGAGCGGAGAAAGGACAGGCCTTATGTGGAGGAGCCACGCCACGTGAAGGTGCAGAAGGGCTCAGAGCCGCTGGGCATCTCCATCGTGAGTGGAGAGAAGGGCGGCATCTACGTCTCCAAGGTGACCGTGGGGAGCATCGCTCACCAGGCTGGCCTCGAGTATGGGGATCAGTTACTGGAGTTCAACGGCATAAACCTGCGGAGCGCCACGGAGCAGCAGGCGCGGCTCATCATCGGGCAGCAGTGTGATACCATCACCATCCTGGCCCAGTACAACCCCCACGTGCACCAGCTCAGCAGCCACTCCCGGTCCAGCTCACACCTGGACCCTGCCGGTACCCACTCCACTCTCCAGGGCAGTGGCACCACCACCCCGGAGCATCCATCTGTCATCGACCCACTGATGGAGCAGGACGAGGGGCCTAGCACCCCCCCAGCCAAGCAGAGCAGCTCCAGGATTGCGGGAGATGCCAACAAGAAGACCCTGGAGCCACGCGTTGTCTTCATCAAAAAGTCCCAGCTGGAGCTTGGGGTGCACTTGTGTGGTGGGAACCTGCATGGGGTGTTTGTGGCCGAGGTGGAGGATGACAGTCCTGCCAAGGGTCCTGACGGCCTCGTGCCAGGGGACCTCATCCTGGAGTATGGCAGCCTGGACGTGCGGAACAAGACAGTGGAGGAAGTCTATGTGGAGATGCTGAAGCCCAGGGATGGCGTCCGCCTGAAGGTGCAGTACCGCCCTGAGGAGTTCACGAAGGCCAAGGGCCTGCCTGGTGACAGCTTCTACATCAGGGCCCTGTACGACCGGCTGGCAGATGTGGAGCAAGAGTTGAGCTTTAAGAAGGACGACATCCTCTACGTGGATGACACCTTACCCCAGGGCACGTTCGGGTCCTGGATGGCTTGGCAGCTGGACGAGAATGCCCAGAAGATCCAGCGCGGGCAGATTCCCAGCAAATATGTGATGGACCAAGAATTCTCCAGGAGGCTCAGCATGTCTGAAGTCAAAGATGACAATAGCGCCACAAAGACGCTGTCAGCGGCTGCACGCCGGTCCTTTTTTCGGAGGAAACACAAGCACAAACGCAGCGGGTCCAAGGACGGGAAAGACCTGCTCGCCTTGGATGCCTTTTCCAGTGACTCCATTCCACTCTTTGAAGATTCGGTGAGCCTGGCCTATCAGCGGGTCCAGAAGGTGGACTGCACCGCTCTGAGGCCTGTCCTGATTCTGGGGCCTTTGCTGGACGTGGTGAAGGAGATGCTGGTGAATGAGGCTCCTGGCAAGTTCTGCAGATGTCCCCTTGAGGTGATGAAGGCCTCCCAGCAGGCCATTGAGCGGGGTGTCAAAGATTGCCTGTTTGTCGACTATAAGCGGAGAAGCGGCCATTTCGATGTGACCACTGTGGCGTCAATAAAGGAGATCACAGAAAAGAACCGACACTGCCTCCTGGACATTGCTCCGCACGCTATTGAGCGGCTCCACCACATGCACATCTACCCCATTGTCATCTTCATCCACTACAAGAGCGCCAAGCACATCAAGGAGCAGAGAGACCCCATCTACCTGAGGGACAAGGTGACTCAGAGGCATTCCAAAGAGCAGTTTGAGGCGGCGCAGAAGCTTGAGCAGGAGTACAGCAGGTACTTCACAGGGGTCATCCAGGGAGGAGCCCTGTCAAGCATTTGCACTCAGATCTTGGCAATGGTCAATCAAGAACAAAATAAAGTCCTGTGGATTCCAGCCTGCCCGCTCTAG MANGGGGGGGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSVHEPKMDALIIPVTMEVPCDSRGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGGKTKVLPTASCPPCPQTQKAAAPSAVWALPGRRRPHHPSSLTSK*MRRWRTSPFSCG**PGRETSSASAWPLLRMARPLTRGPTTG*ILTMRG*RSSACEPCRTCRACRTSTPTP*RGVRRWPRRLTSTTHSTAGS*VTRLG*RMTWTC*GGRMGSCCGSETCCSSHGRT*SGSTRRTRRRSVTSVPSSSRC*STTGHPRFSTNCMTRPWTSWRWSRRTMTPFGRGTVRKSPSTMQT*AAWSSWGRRTSGC*SRQRC*PSRGTRPSSCSTSAPSP*GGLRRSTMS*TRPRRRTRTCSGRWSCCSQS*PS*EPRR*RQQRSRRNTGRSGTLCTASTSSS*VSVTRSSLSWTSCRPKWSWPSPSSRAAHLRRRRPMRRWRRCGRSKTR*QWMLGEPTRRLKSFESSARLCARS*RKPSRRRMWPSAGGTGPSRSETRL*QSVTASGHCVTT*GGSGTVR*ASWLRPCAAWMTPASRRMMSAAS*RSSRNRWNPSWKRRPGSDS*WPTAPTTRPLTRIPWSGKRKL*SSRGRRRILT*RHWGLIWQKV*MSLVSRGTVAYLSLKWTKEALLMAA*GSMTGC*ESTMWTSSTRTRSRPSRRSSMGRGPSTWSCGGGSPWVGRWSRRCTSTSVDRKTVASVWRMECMLPLCCLEALPLKKGPLLWETGSLRSMALHWTTSL*MNVNLCCAAARTP*PCPS*RYSLRAPRGVARTFLKISKTLIRC*VFEPMARRSRLITNGT*YSTITPRRQTSSTRTGWKTGRSQAPQEAAAPFCISHSLGDPCRSAPRPVPVPLSVA*APSAQMPLGTVALGWWTCVAGGHCCPLRPRWAPVGLGRPPWTRQTLKAPTAAGPGPRPCSAPRQCLRSSLFIKSQSKESPSLTLTLSNAPRHPPK*TTCFQVLGLLTLPSPPRGRGL*HPQNLPEGATPLSSSTGWRLAPSQKPLWWAAPHPLVPRAPCPLTWTPGSPCTHHPLARPGSALLPATTLKEMGTPPTCRPRNPVMRTSPPRRWMSWGRSVAGQNLLPVFGRSLLQ**FLLSSWRNRSVSRPVENSPRSSRSGHLTRLGIPAGTATPRYTLAGRLWALFPGV*PPAPL*APSCGTPSTLCAVTGSAPAALHLRPEMLAPRVCIPVSSTRDA*AWT*ATGPAATTPR*EPPMGPTHCPPAPAWVLRVTCSSRRNALKSHQHQDIRGVSWAPREVQCHILNAALLHSHP*TSTPCPLVASPRPQPPHCPESLSTPRPSGSGERTGLMWRSHAT*RCRRAQSRWASPS*VERRAASTSPR*PWGASLTRLASSMGISYWSSTA*TCGAPRSSRRGSSSGSSVIPSPSWPSTTPTCTSSAATPGPAHTWTLPVPTPLSRAVAPPPRSIHLSSTH*WSRTRGLAPPQPSRAAPGLREMPTRRPWSHALSSSKSPSWSLGCTCVVGTCMGCLWPRWRMTVLPRVLTASCQGTSSWSMAAWTCGTRQWRKSMWRC*SPGMASA*RCSTALRSSRRPRACLVTASTSGPCTTGWQMWSKS*ALRRTTSSTWMTPYPRARSGPGWLGSWTRMPRRSSAGRFPANM*WTKNSPGGSACLKSKMTIAPQRRCQRLHAGPFFGGNTSTNAAGPRTGKTCSPWMPFPVTPFHSLKIR*AWPISGSRRWTAPL*GLS*FWGLCWTW*RRCW*MRLLASSADVPLR**RPPSRPLSGVSKIACLSTISGEAAISM*PLWRQ*RRSQKRTDTASWTLLRTLLSGSTTCTSTPLSSSSTTRAPSTSRSRETPST*GTR*LRGIPKSSLRRRRSLSRSTAGTSQGSSREEPCQAFALRSWQWSIKNKIKSCGFQPARS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma OVARY,BREAST no_match 79397023|79397023|79397023,79163620 TRUE|TRUE|TRUE,FALSE 79584234|79556352|79579776,79552301 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30163 FUT8::GALNT16 ENSG00000033170.17::ENSG00000100626.17 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 992 FALSE NA FALSE NA FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65561766:+ chr14:65877310-66210839:+ chr14:66028484:+ GALNT16 ENSG00000100626.17 protein_coding + + chr14:69259277-69357033:+ chr14:69341681:+ chr14:69725994-69823750:+ chr14:69808398:+ chr14:65562987,chr14:65562985 chr14:69340814,chr14:69340812 NA NA chr14:66029705,chr14:66029703 chr14:69807531,chr14:69807529 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FUT8_N_cat-PARTIAL|2-203~|2e-230^Nuf2_DHR10-like|38-65|0.014^Wtap|41-69|0.00031^Wtap|81-105|0.027^Nuf2_DHR10-like|83-105|0.0025 none ["FUT8:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:3.52Mb] 137 61 137 61 ONLY_REF_SPLICE YES_LDAS 2.211 GT 1.8892 AG 1.8892 ENST00000394586.6 1-203 ENST00000337827.8 1188-1677 chr14|+|[0]65561564-65561766[1]<==>chr14|+|[2]69341681-69341764[1]|[2]69347040-69347181[2]|[0]69347877-69348002[2]|[0]69352031-69352168[2] atgcggccatggactggttcctggcgttggattatgctcattctttttgcctgggggaccttgctgttttatataggtggtcacttggtacgagataatgaccatcctgatcactctagccgagaactgtccaagattctggcaaagcttgaacgcttaaaacaacagaatgaagacttgaggcgaatggccgaatctctccgTGTGGCTACGCGGATAGAGCAGAGGAAGAAGATGAACTGCAAGTCCTTCCGCTGGTACCTGGAGAACGTCTACCCAGAGCTCACGGTCCCCGTGAAGGAAGCACTCCCCGGCATCATTAAGCAGGGGGTGAACTGCTTAGAATCTCAGGGCCAGAACACAGCTGGTGACTTCCTGCTTGGAATGGGGATCTGCAGAGGGTCTGCCAAGAACCCGCAGCCCGCCCAGGCATGGCTGTTCAGTGACCACCTCATCCAGCAGCAGGGGAAGTGCCTGGCTGCCACCTCCACCTTAATGTCCTCCCCTGGATCCCCAGTCATACTGCAGATGTGCAACCCTAGAGAAGGCAAGCAGAAATGGAGGAGAAAAGGATCTTTCATCCAGCATTCAGTCAGTGGCCTCTGCCTGGAGACAAAGCCTGCCCAGCTGGTGACCAGCAAGTGTCAGGCTGACGCCCAGGCCCAGCAGTGGCAGCTGTTGCCACACACATGA MRPWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDLRRMAESLRVATRIEQRKKMNCKSFRWYLENVYPELTVPVKEALPGIIKQGVNCLESQGQNTAGDFLLGMGICRGSAKNPQPAQAWLFSDHLIQQQGKCLAATSTLMSSPGSPVILQMCNPREGKQKWRRKGSFIQHSVSGLCLETKPAQLVTSKCQADAQAQQWQLLPHT* FALSE TRUE hsa-mir-625 chr14:65471102-65471186:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30164 C10orf95-AS1::SUFU ENSG00000269609.6::ENSG00000107882.12 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 993 TRUE 1739 TRUE 687 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102450330:+ chr10:104209573-104220863:+ chr10:104210087:+ SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102592582:+ chr10:104263729-104393292:+ chr10:104352339:+ chr10:102451225 chr10:102566972 NA NA chr10:104210982 chr10:104326729 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SUFU:ArcherDX_panel","SUFU:FoundationOne_panel","SUFU:Oncogene"] 38 24 38 17.21 ONLY_REF_SPLICE YES_LDAS 0.6165 GT 1.371 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site 30169 EFHD1::UBR3 ENSG00000115468.13::ENSG00000144357.18 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 997 FALSE NA FALSE NA EFHD1 ENSG00000115468.13 protein_coding + + chr2:232606057-232682776:+ chr2:232672443:+ chr2:233470767-233547486:+ chr2:233537153:+ UBR3 ENSG00000144357.18 protein_coding + + chr2:169827454-170084131:+ chr2:170061079:+ chr2:170683964-170940641:+ chr2:170917589:+ chr2:232678797,chr2:232678793 chr2:170057925,chr2:170057918 NA NA chr2:233543507,chr2:233543503 chr2:170914435,chr2:170914428 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EF-hand_7|93-152|8.4e-14^EF-hand_1|94-122|1e-08^EF-hand_6|94-123|4.4e-09^EF-hand_8|94-121|0.00098^EF-hand_5|95-119|8.7e-07^EF-hand_9|96-155|6.5e-05^AIF-1|97-154|1.3e-15^EF-hand_1|131-157|1.6e-06^EF-hand_5|131-151|2.3e-05^EF-hand_6|132-156|0.0005^EF-hand_8|133-152|8.8e-06^AIF-1|209-224|2.8 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:62.52Mb] 15 4 15 4 ONLY_REF_SPLICE YES_LDAS 0.2122 GT 1.9656 AG 1.9329 ENST00000264059.8 1-585 ENST00000272793.11 4786-5667 chr2|+|[0]232633705-232634006[1]|[2]232662802-232662949[2]|[0]232672309-232672443[2]<==>chr2|+|[0]170061079-170061186[2]|[0]170061318-170061443[2]|[0]170073428-170073607[2]|[0]170079814-170080023[2]|[0]170080545-170080684[1]|[2]170081726-170081843[2] atggccagtgaggagctggcgtgcaagctggagcgccggctgcggcgcgaggaggccgaggagagtggcccccagctggctcccctcggcgccccagccccggagcccaagcccgagcccgagcctcccgcccgtgcgcccacggccagcgccgacgcggagctgagcgcccagctgagccggcggctggacatcaacgagggcgctgcgcggccccggcgctgcagggtcttcaacccctacacggagttcccggagttcagccgccgcctcatcaaggacctggagagcatgttcaaactgtatgacgctgggcgggatggcttcatcgacctgatggagctgaagctgatgatggagaagctgggggccccccagacccacctgggcctgaagagcatgatcaaggaggtggatgaggacttcgatggcaagctcagcttccgggagttcctgctcattttccacaaggccgcggcaggggagctgcaggaggacagtgggctgatggcgctggcaaagctttctgagatcgatgtggccctggagggtgtcaaaggtgccaagaacttctttgaagccaagAGTACATGTGATGCAGAAAAGTCTTACGAAGTATTACTGAGCTTTGTGATAAGTGAACTATTTAAAGGAAAGTTATACCATGAAGAAGGAACTCAGGAATGTGCAATGGTTAACCCTATTGCTTGGTCTCCTGAATCCATGGAAAAATGCTTACAGGACTTCTGCTTACCTTTTCTCAGAATCACCAGCCTTCTTCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGCCAGGAAGAAGAAGAATTTTCAGTTCTTGCCAGCTGCCTGGGACTTCTGCCAACGTTTTACCAAACAGAACATCCATTCATCAGTGCCTCCTGTCTGGATTGGCCAGTTCCAGCATTTGATATTATAACTCAGTGGTGTTTTGAGATAAAATCATTTACTGAAAGACATGCAGAACAAGGAAAGGCCTTGCTTATCCAAGAGTCAAAATGGAAATTACCACACCTACTACAGTTGCCTGAGAATTATAACACCATTTTTCAGTACTACCACAGAAAAACCTGTAGTGTCTGCACCAAGGTTCCTAAAGATCCTGCTGTTTGCCTTGTGTGTGGTACTTTTGTATGCCTGAAAGGACTTTGCTGCAAGCAACAAAGTTACTGTGAATGTGTACTGCACTCTCAGAACTGTGGTGCAGGAACAGGTATTTTCCTTTTGATCAATGCATCGGTAATTATCATCATTCGAGGTCACCGCTTCTGCCTCTGGGGTTCCGTGTATTTGGATGCTCATGGAGAGGAAGACCGGGATCTTAGGCGAGGCAAACCTCTCTACATTTGTAAGGAAAGATACAAAGTTCTTGAGCAACAGTGGATTTCTCATACTTTTGATCACATCAATAAAAGATGGGGTCCACATTACAATGGGCTGTGA MASEELACKLERRLRREEAEESGPQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQLSRRLDINEGAARPRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAKSTCDAEKSYEVLLSFVISELFKGKLYHEEGTQECAMVNPIAWSPESMEKCLQDFCLPFLRITSLLQHHLFGEDLPSCQEEEEFSVLASCLGLLPTFYQTEHPFISASCLDWPVPAFDIITQWCFEIKSFTERHAEQGKALLIQESKWKLPHLLQLPENYNTIFQYYHRKTCSVCTKVPKDPAVCLVCGTFVCLKGLCCKQQSYCECVLHSQNCGAGTGIFLLINASVIIIIRGHRFCLWGSVYLDAHGEEDRDLRRGKPLYICKERYKVLEQQWISHTFDHINKRWGPHYNGL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30172 C10orf95-AS1::SUFU ENSG00000269609.6::ENSG00000107882.12 PC14 SRR8615640 SRR8670735 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 994 TRUE 1739 TRUE 687 C10orf95-AS1 ENSG00000269609.6 lncRNA + + chr10:102449816-102461106:+ chr10:102451018:+ chr10:104209573-104220863:+ chr10:104210775:+ SUFU ENSG00000107882.12 protein_coding + + chr10:102503972-102633535:+ chr10:102592582:+ chr10:104263729-104393292:+ chr10:104352339:+ chr10:102451225 chr10:102566972 NA NA chr10:104210982 chr10:104326729 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SUFU:ArcherDX_panel","SUFU:FoundationOne_panel","SUFU:Oncogene"] 9 26 9 6.09 ONLY_REF_SPLICE YES_LDAS 0.1685 GT 1.4566 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE suppressor of fused homolog (Drosophila) 1 Yes medulloblastoma medulloblastoma medulloblastoma predisposition other TSG large_deletion, frameshift, splice_site 30175 SMAGP::TFCP2 ENSG00000170545.17::ENSG00000135457.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 999 FALSE NA FALSE NA SMAGP ENSG00000170545.17 protein_coding - - chr12:51244558-51270415:- chr12:51269245:- chr12:51638342-51664199:- chr12:51663029:- TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51099779:- chr12:51487439-51566918:- chr12:51493562:- chr12:51261996,chr12:51261998,chr12:51262068,chr12:51262044 chr12:51100450,chr12:51100449,chr12:51100645,chr12:51100621 NA NA chr12:51655780,chr12:51655782,chr12:51655852,chr12:51655828 chr12:51494233,chr12:51494232,chr12:51494428,chr12:51494404 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame m04gp34like-PARTIAL|20-34~|2.5e-05^OAD_gamma-PARTIAL|30-34~|3.3e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.07Mb];NEIGHBORS[71424] 433 129 433 129 ONLY_REF_SPLICE YES_LDAS 7.9115 GT 1.8892 AG 1.9219 ENST00000603798.6 1-34 ENST00000549867.5 918-1275 chr12|-|[0]51269245-51269278[0]<==>chr12|-|[2]51095241-51095278[1]|[0]51095989-51096040[0]|[2]51098776-51098918[1]|[0]51099655-51099779[2] atgaccagcctcctgactactccttctccaagagGATGGTGCGTCCAAGGTTAACCATTTATGTTTGTCAGGAATCACTGCAGTTGAGGGAGCAGCAACAACAGCAGCAGCAACAGCAGCAGAAGCATGAGGATGGAGACTCAAATGGTACTTTCTTCGTTTACCATGCTATCTATCTAGAAGAACTAACAGCTGTTGAATTGACAGAAAAAATTGCTCAGCTTTTCAGCATTTCCCCTTGCCAGATCAGCCAGATTTACAAGCAGGGGCCAACAGGAATTCATGTGCTCATCAGTGATGAGATGATACAGAACTTTCAGGAAGAAGCATGTTTTATTCTGGACACAATGAAAGCAGAAACCAATGATAGCTATCATATCATACTGAAGTAG MTSLLTTPSPRGWCVQG*PFMFVRNHCS*GSSNNSSSNSSRSMRMETQMVLSSFTMLSI*KN*QLLN*QKKLLSFSAFPLARSARFTSRGQQEFMCSSVMR*YRTFRKKHVLFWTQ*KQKPMIAIISY*S FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30176 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1001 TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111722:+ chr10:76859344-76941881:+ chr10:76871480:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SAM_PNT|73-116|1.1e-05^SAM_1|74-138|2.7e-12^SAM_2|74-139|6.9e-06 none ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.39Mb] 123 24 123 10.78 ONLY_REF_SPLICE YES_LDAS 1.8833 GT 1.7819 AG 1.7232 ENST00000671730.1 1-174 ENST00000541550.6 505-1071 chr10|+|[0]75111549-75111722[2]<==>chr10|+|[0]74525256-74525426[2]|[0]74589282-74589317[2]|[0]74600379-74600493[0]|[1]74670183-74670269[0]|[1]74686699-74686820[2]|[0]74708321-74708356[2] atgcctgcgcgcagtcgccaccgcccccgcctccactccggctccccgccccgggctccgcccccgccgcttgaggcgcttcactccggcgaggcggggagggccccggactccgacggcggctcggacgccgactcggaggtgggtccggggagcccgactcggaccgcggagGGCTTTTTTCTTACAGTTTCCCCAGAGTCAGTATTAAAGGTGGCTCACCATGCTTCTGAAAACAACAGGATTTTCACTTTGAATCTATCTGCACCGTTTATTAGCCAGTTCTACAAGGAATCATTGATGAAAGTTATGCCTTATGTTGATATACTTTTTGGAAATGAGACAGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAGAAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTACCCTGCCTCAGCCTCCCAAGTAGCTGGCGACTACAGGTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGA MPARSRHRPRLHSGSPPRAPPPPLEALHSGEAGRAPDSDGGSDADSEVGPGSPTRTAEGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGDGVLLCHQAGVQWHDLGSLQPLPLGFKRLPCLSLPSSWRLQVFCLNWSLTSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 TRUE|FALSE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30177 KDM5B::BRINP3-DT ENSG00000117139.18::ENSG00000237457.6 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KDM5B ENSG00000117139.18 protein_coding - - chr1:202724495-202808487:- chr1:202745858:- chr1:202693623-202777615:- chr1:202714986:- BRINP3-DT ENSG00000237457.6 lncRNA + + chr1:190478551-190480735:+ chr1:190480345:+ chr1:190447681-190449865:+ chr1:190449475:+ chr1:202744327 chr1:190479433 NA NA chr1:202713455 chr1:190448563 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 118 75 118 75 ONLY_REF_SPLICE YES_LDAS 2.7169 GT 1.4256 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30178 MIER2::PPFIA3 ENSG00000105556.12::ENSG00000177380.14 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1000 FALSE NA FALSE NA MIER2 ENSG00000105556.12 protein_coding - - chr19:305573-344815:- chr19:340514:- chr19:305573-344815:- chr19:340514:- PPFIA3 ENSG00000177380.14 protein_coding + + chr19:49119544-49151026:+ chr19:49141420:+ chr19:49622801-49654283:+ chr19:49644677:+ chr19:340133,chr19:340138 chr19:49141032,chr19:49141027 NA NA chr19:340133,chr19:340138 chr19:49644289,chr19:49644284 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:48.77Mb] 109 29 109 29 ONLY_REF_SPLICE YES_LDAS 1.9426 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30179 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1002 TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111722:+ chr10:76859344-76941881:+ chr10:76871480:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SAM_PNT|73-116|1.1e-05^SAM_1|74-138|2.7e-12^SAM_2|74-139|6.9e-06 none ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.39Mb] 77 12 77 2.46 ONLY_REF_SPLICE YES_LDAS 1.1186 GT 1.7819 AG 1.9656 ENST00000671730.1 1-174 ENST00000541550.6 676-1071 chr10|+|[0]75111549-75111722[2]<==>chr10|+|[0]74589282-74589317[2]|[0]74600379-74600493[0]|[1]74670183-74670269[0]|[1]74686699-74686820[2]|[0]74708321-74708356[2] atgcctgcgcgcagtcgccaccgcccccgcctccactccggctccccgccccgggctccgcccccgccgcttgaggcgcttcactccggcgaggcggggagggccccggactccgacggcggctcggacgccgactcggaggtgggtccggggagcccgactcggaccgcggagGAAGCTGCCACTTTTGCTAGAGAGCAAGGCTTTGAGACTAAAGACATTAAAGAGATAGCCAAAAAGACACAAGCCCTGCCAAAGATGAACTCAAAGAGGCAGCGAATCGTGATCTTCACCCAAGGGAGAGATGACACTATAATGGCTACAGAAAGTGAAGTCACTGCTTTTGCTGTCTTGGATCAAGACCAGAAAGAAATTATTGATACCAATGGAGCTGGAGATGCATTTGTTGGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCTCGGGTTCAAGCGATTACCCTGCCTCAGCCTCCCAAGTAGCTGGCGACTACAGGTTTTCTGTCTCAACTGGTCTCTGACAAGCCTCTGA MPARSRHRPRLHSGSPPRAPPPPLEALHSGEAGRAPDSDGGSDADSEVGPGSPTRTAEEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAFVGDGVLLCHQAGVQWHDLGSLQPLPLGFKRLPCLSLPSSWRLQVFCLNWSLTSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 TRUE|FALSE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30180 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111778:+ chr10:76859344-76941881:+ chr10:76871536:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74589282:+ chr10:75910960-76469721:+ chr10:76349040:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.39Mb] 53 40 53 12.61 ONLY_REF_SPLICE YES_LDAS 0.9236 GT 1.8323 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 FALSE|TRUE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30181 SAMD8::ADK ENSG00000156671.15::ENSG00000156110.15 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1752 TRUE 693 SAMD8 ENSG00000156671.15 protein_coding + + chr10:75099586-75182123:+ chr10:75111778:+ chr10:76859344-76941881:+ chr10:76871536:+ ADK ENSG00000156110.15 protein_coding + + chr10:74151202-74709963:+ chr10:74525256:+ chr10:75910960-76469721:+ chr10:76285014:+ chr10:75122032,chr10:75122033 chr10:74442865,chr10:74442863 NA NA chr10:76881790,chr10:76881791 chr10:76202623,chr10:76202621 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.39Mb] 53 81 53 55.14 ONLY_REF_SPLICE YES_LDAS 1.5223 GT 1.8323 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 76871480|76871536 FALSE|TRUE 76468079|76468079 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30183 PUS7::ENSG00000243797 ENSG00000091127.14::ENSG00000243797.6 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1004 FALSE NA FALSE NA PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105522052:- chr7:105080108-105162718:- chr7:105162499:- ENSG00000243797 ENSG00000243797.6 lncRNA - - chr7:106372251-106770207:- chr7:106465936:- chr7:106012697-106410653:- chr7:106106382:- chr7:105515345,chr7:105515353 chr7:106467857,chr7:106467862 NA NA chr7:105155792,chr7:105155800 chr7:106108303,chr7:106108308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 30 18 30 18 ONLY_REF_SPLICE YES_LDAS 0.6757 GT 1.6895 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30185 CAMK2G::KIFBP ENSG00000148660.22::ENSG00000198954.9 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1007 FALSE NA FALSE NA CAMK2G ENSG00000148660.22 protein_coding - - chr10:73812501-73874591:- chr10:73837468:- chr10:75572259-75634349:- chr10:75597226:- KIFBP ENSG00000198954.9 protein_coding + + chr10:68988803-69043544:+ chr10:69010900:+ chr10:70748559-70803300:+ chr10:70770656:+ chr10:73835781,chr10:73835789 chr10:69009829,chr10:69009819 NA NA chr10:75595539,chr10:75595547 chr10:70769585,chr10:70769575 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FTA2|12-56|0.02^Pkinase|14-272|1.5e-79^PK_Tyr_Ser-Thr|16-265|1.2e-37^APH|35-130|0.0014^ABC1|87-169|1.9e-05^Kdo|99-158|9.5e-06^FTA2|114-143|0.00081^Pkinase_fungal|119-189|6.5e-06^APH|132-147|0.0063^CaMKII_AD|431-524|5.1e-45^DUF4440|435-521|5.4e-07^SnoaL_3|438-515|2e-07^PK_Tyr_Ser-Thr|454-463|3.8 none none 23 9 23 9 ONLY_REF_SPLICE YES_LDAS 0.4505 GT 1.8295 AG 1.9899 ENST00000700396.1 1-1053 ENST00000674660.1 824-1815 chr10|-|[2]73837468-73837511[1]|[0]73839539-73839601[1]|[0]73842169-73842211[0]|[2]73842458-73842541[0]|[2]73847225-73847347[0]|[2]73847988-73848082[1]|[0]73848526-73848609[1]|[0]73849013-73849115[0]|[2]73849261-73849333[2]|[1]73852254-73852319[2]|[1]73853192-73853246[1]|[0]73860830-73860889[1]|[0]73872989-73873083[2]|[1]73874397-73874461[0]<==>chr10|+|[1]69010900-69011015[2]|[0]69015541-69016416[2] atggccaccaccgccacctgcacccgtttcaccgacgactaccagctcttcgaggagcttggcaagggtgctttctctgtggtccgcaggtgtgtgaagaaaacctccacgcaggagtacgcagcaaaaatcatcaataccaagaagttgtctgcccgggatcaccagaaactagaacgtgaggctcggatatgtcgacttctgaaacatccaaacatcgtgcgcctccatgacagtatttctgaagaagggtttcactacctcgtgtttgaccttgttaccggcggggagctgtttgaagacattgtggccagagagtactacagtgaagcagatgccagccactgtatacatcagattctggagagtgttaaccacatccaccagcatgacatcgtccacagggacctgaagcctgagaacctgctgctggcgagtaaatgcaagggtgccgccgtcaagctggctgattttggcctagccatcgaagtacagggagagcagcaggcttggtttggttttgctggcaccccaggttacttgtcccctgaggtcttgaggaaagatccctatggaaaacctgtggatatctgggcctgcggggtcatcctgtatatcctcctggtgggctatcctcccttctgggatgaggatcagcacaagctgtatcagcagatcaaggctggagcctatgatttcccatcaccagaatgggacacggtaactcctgaagccaagaacttgatcaaccagatgctgaccataaacccagcaaagcgcatcacggctgaccaggctctcaagcacccgtgggtctgtcaacgatccacggtggcatccatgatgcatcgtcaggagactgtggagtgtttgcgcaagttcaatgcccggagaaaactgaagggtgccatcctcacgaccatgcttgtctccaggaacttctcagttggcaggcagagctccgcccccgcctcgcctgccgcgagcgccgccggcctggccgggcaagctgccaaaagcctattgaacaagaagtcggatggcggtgtcaagCTCCTGAAGCTGAAGGAGAAGTGCCAGAGCTTTATCATCAAAGAAAGGGGGAAATAGCAAGGTGCTGGATCAAATACTGTTTGACTCTCATGCAGAATGCCCAACTCTCCATGCAGGACAACATAGGAGAGCTTGATCTTGATAAACAGTCTGAACTTAGAGCTTTAAGGAAAAAAGAACTAGATGAGGAGGAAAGCATTCGGAAAAAAGCTGTGCAGTTTGGAACCGGTGAACTGTGTGATGCCATCTCTGCAGTAGAAGAGAAAGTGAGCTACTTGAGACCTTTAGATTTTGAAGAAGCCAGAGAACTTTTCTTATTGGGTCAGCACTATGTCTTTGAGGCAAAAGAGTTCTTTCAGATTGATGGTTATGTCACTGACCATATTGAAGTTGTCCAAGACCACAGTGCTCTGTTTAAGGTGCTTGCATTCTTTGAAACTGACATGGAGAGACGGTGCAAGATGCATAAACGCAGAATAGCCATGCTAGAGCCCCTAACTGTAGACCTGAATCCACAGTATTATCTGTTGGTCAACAGACAGATCCAGTTTGAAATTGCACATGCTTACTATGATATGATGGATTTGAAGGTTGCCATTGCTGACAGGCTAAGGGATCCTGATTCACACATTGTAAAAAAAATAAATAATCTTAATAAGTCAGCACTGAAGTACTACCAGCTCTTCTTAGACTCCCTGAGAGACCCAAATAAAGTATTCCCTGAGCATATAGGGGAAGATGTTCTTCGCCCTGCCATGTTAGCTAAGTTTCGAGTTGCCCGTCTCTATGGCAAAATCATTACTGCAGATCCCAAGAAAGAGCTGGAAAATTTGGCAACATCATTGGAACATTACAAATTTATTGTTGATTACTGTGAAAAGCATCCTGAGGCCGCCCAGGAAATAGAAGTTGAGCTAGAACTTAGTAAAGAGATGGTTAGTCTTCTCCCAACAAAAATGGAGAGATTCAGAACCAAGATGGCCCTGACTTAA MATTATCTRFTDDYQLFEELGKGAFSVVRRCVKKTSTQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSPEWDTVTPEAKNLINQMLTINPAKRITADQALKHPWVCQRSTVASMMHRQETVECLRKFNARRKLKGAILTTMLVSRNFSVGRQSSAPASPAASAAGLAGQAAKSLLNKKSDGGVKLLKLKEKCQSFIIKERGK*QGAGSNTV*LSCRMPNSPCRTT*ESLILINSLNLEL*GKKN*MRRKAFGKKLCSLEPVNCVMPSLQ*KRK*AT*DL*ILKKPENFSYWVSTMSLRQKSSFRLMVMSLTILKLSKTTVLCLRCLHSLKLTWRDGARCINAE*PC*SP*L*T*IHSIICWSTDRSSLKLHMLTMI*WI*RLPLLTG*GILIHTL*KK*IILISQH*STTSSS*TP*ETQIKYSLSI*GKMFFALPC*LSFELPVSMAKSLLQIPRKSWKIWQHHWNITNLLLITVKSILRPPRK*KLS*NLVKRWLVFSQQKWRDSEPRWP*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma CAMK CAMK2 Q13555 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30190 PLEKHA6::ASAH2B ENSG00000143850.16::ENSG00000204147.11 PC3 SRR8615641 SRR8670734 PROSTATE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHA6 ENSG00000143850.16 protein_coding - - chr1:204218853-204377665:- chr1:204367799:- chr1:204187981-204346793:- chr1:204336927:- ASAH2B ENSG00000204147.11 protein_coding + + chr10:50739318-50816495:+ chr10:50806093:+ chr10:52499078-52576255:+ chr10:52565853:+ chr1:204339305,chr1:204339307 chr10:50798322,chr10:50798320 NA NA chr1:204308433,chr1:204308435 chr10:52558082,chr10:52558080 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr10] 13 6 13 6 ONLY_REF_SPLICE YES_LDAS 0.2675 GT 1.7968 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30197 MICAL2::PARVA ENSG00000133816.19::ENSG00000197702.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1012 FALSE NA FALSE NA MICAL2 ENSG00000133816.19 protein_coding + + chr11:12094008-12359144:+ chr11:12259897:+ chr11:12115555-12380691:+ chr11:12281444:+ PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12496458:+ chr11:12399110-12556903:+ chr11:12518005:+ chr11:12261439,chr11:12261440 chr11:12485233,chr11:12485231 NA NA chr11:12282986,chr11:12282987 chr11:12506780,chr11:12506778 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pyr_redox_2|84-122|5.2e-08^NAD_binding_7|84-122|1.2e-06^Thi4|86-121|3.7e-05^AlaDh_PNT_C|86-120|0.00044^FAD_binding_3|87-123|6.1e-10^HI0933_like|88-123|1.9e-06^DAO|89-122|3.4e-07^Pyr_redox|89-122|1.2e-06^FAD_binding_2|90-122|5.9e-08^Pyr_redox_3|90-118|8.3e-08^FAD_oxidored|90-119|5.6e-06^Lycopene_cycl|90-140|2.5e-05^NAD_binding_8|91-121|8.5e-07^FAD_binding_3|164-230|0.65^Pyr_redox_2|171-239|1^CH|521-622|1.8e-28^CAMSAP_CH|537-569|8.6e-07^LIM|1002-1058|5.2e-10^zf-C5HC2|1029-1067|0.00014 none ["Klijn_CellLines","DepMap2023"];INTRACHROMOSOMAL[chr11:0.11Mb] 188 267 188 267 ONLY_REF_SPLICE YES_LDAS 5.9092 GT 1.5301 AG 1.7056 ENST00000683283.1 1-3334 ENST00000334956.15 401-1119 chr11|+|[0]12162156-12162419[2]|[0]12204250-12204457[0]|[1]12208023-12208139[0]|[1]12209497-12209598[0]|[1]12213255-12213410[0]|[1]12216219-12216319[2]|[0]12220201-12220458[2]|[0]12221644-12221759[1]|[2]12222617-12222743[2]|[0]12223411-12223501[0]|[1]12224673-12224820[1]|[2]12226171-12226370[0]|[1]12227025-12227131[2]|[0]12236177-12236245[2]|[0]12239436-12239585[2]|[0]12241040-12241162[2]|[0]12242214-12242432[2]|[0]12242671-12242772[2]|[0]12243987-12244112[2]|[0]12249184-12249246[2]|[0]12255643-12255750[2]|[0]12256785-12256971[0]|[1]12258468-12258556[2]|[0]12259795-12259897[0]<==>chr11|+|[1]12496458-12496598[0]|[1]12504314-12504429[2]|[0]12508584-12508642[1]|[2]12511514-12511533[0]|[1]12513299-12513360[2]|[0]12513997-12514065[2]|[0]12517610-12517711[2]|[0]12518445-12518517[0]|[1]12527849-12527925[2] atgggggaaaacgaggatgagaagcaggcccaggcggggcaggtttttgagaactttgtccaggcatccacgtgcaaaggtaccctccaggccttcaacattctcacacgacacctggacctagaccctctggaccacagaaacttttattccaagctcaagtccaaggtgaccacctggaaagccaaagccctgtggtacaaattggataagcgtggttcccacaaagagtataagcgagggaagtcgtgcacgaacaccaagtgtctcatagttgggggaggaccctgtggcttgcgcactgccattgaacttgcctacctgggagccaaagtggtcgtggtggagaagagggactccttctcccggaacaacgtgctacacctctggcctttcaccatccatgaccttcgtggcctgggagccaagaagttctatgggaagttctgtgctggctccatcgaccatatcagtattcgccaactacagctcatcctattcaaggtggccctgatgctgggagttgaaatccatgtgaatgtggagttcgtgaaggttctagagcctcctgaagatcaagaaaatcaaaaaattggctggcgggcagaatttctccctacagaccattctctgtcggagtttgagtttgacgtcatcattggtgccgatggccgcaggaacaccctggaagggttcagaagaaaagaattccgtgggaagctggcgattgccatcaccgccaacttcataaacagaaacagcacagcggaagccaaggtggaagagattagtggtgtggctttcatcttcaatcagaaattttttcaggaccttaaagaagaaacaggcatagatcttgagaacattgtttactacaaggactgcacccactattttgtaatgacagccaagaagcagagcctgctcgacaaaggtgtcatcattaacgactacatcgacacagagatgctgctgtgtgcggagaacgtgaaccaagacaacctgctatcctatgcccgggaagctgcagactttgccaccaactaccagctgccatccttagactttgccatgaaccactatgggcagcctgatgtggccatgtttgactttacctgcatgtatgcctcagagaacgcggccctggtgcgggagcggcaggcgcaccagctgctcgtggcccttgtgggtgacagcttgcttgagccattttggcccatgggtacaggctgtgcccgtggcttcctggcagcctttgacacggcatggatggtgaagagctggaaccagggcacccctcccctggagctgctggctgaaagggaaagtctctaccggctgttacctcagacaaccccggagaacatcaacaagaactttgagcagtacacgttggacccagggacacggtacccaaacctcaactcacactgtgtcaggccccatcaggtgaagcatttgtatatcactaaggagctggagcactaccctctcgagagactgggctcggtgaggagatctgtcaacctctccaggaaggagtcagatatccggcccagcaagctcctgacctggtgccagcagcagacagagggctaccagcatgtcaacgtcaccgacctgaccacatcctggcgcagtgggttggccctgtgtgccatcatccaccgcttccggcctgagctcatcaactttgactctttgaatgaagatgatgctgtggagaacaaccagctcgcatttgatgtggccgagcgagagtttgggatccctccagtgaccacgggcaaagagatggcatctgcccaggagcctgacaagctcagcatggtcatgtacctctccaagttctacgagctcttccggggcaccccactgaggcccgtggattcttggcgcaaaaactatggagaaaatgctgacctcagcttggccaaatcatccatttctaataactatctcaacctcacatttccaaggaagaggactccacgggtggatggtcaaaccggagagaatgacatgaacaaacggagacggaagggcttcaccaacctggacgagccttcaaacttttccagccgtagcttgggctccaatcaagagtgtgggagcagtaaggaaggtggaaatcagaacaaagtcaagtccatggcgaatcagctgctggccaagtttgaggagagcactcggaacccctcactcatgaagcaggaacgccgtgtctcagggataggtaagccggtcctgtgctcttcctccggccctcctgttcactcttgctgccccaagccggaggaggccacacccagcccatcacctcctctgaaaaggcagttcccctctgtggtcgtgacggggcacgtgctcagagagctcaagcaagtgtctgctggcagtgagtgcctgagcagaccttggagagccagagccaagtctgacctacagctgggtgggacagaaaatttcgctaccctgccttctacccgcccgagggcgcaggctctttccggggtgctgtggcggctgcagcaagtggaggaaaagattctccagaagagggctcagaacttggccaacagggaatttcacacaaagaacattaaggagaaggcggctcaccttgcctccatgtttggacacggggatttcccgcagaataaactactctctaaaggcctgtctcatactcatcctccatctcctccctctcgccttccgtctcctgatccagctgcttcttcctctccatcaactgttgactctgcttctcctgccagaaaggaaaagaagtcaccttcagggttccattttcatcccagccatttgagaacagtgcatcctcagctgacggtagggaaagtgtccagcggaataggggctgcagctgaagtcctggtcaatctgtacatgaatgatcacagacctaaggcccaggccacctctccagacctggaatctatgcgaaagtcatttccccttaacctgggaggcagcgacacgtgttacttctgtaagaaacgtgtgtacgtgatggaacggctgagcgccgagggccacttcttccaccgggagtgtttccgctgcagcatctgtgccaccaccttgcgcctggccgcctacacctttgactgcgatgaaggcaaattttactgcaagcctcacttcattcactgtaaaaccaatagcaaacaacggaagagacgggcagagttgaagcaacaaagagaggaggaggcaacatggcaagagcaggaagcccctcggagagacactcccaccgaaagttcttgcgcagtggccgccattggcaccctggaaggcagccccccagAGAAACTGGAGAGTGAGAAGCTAAATGTGGCTGAGGTCACCCAGTCAGAGATTGCTCAGAAGCAAAAACTGCAGACTGTCCTGGAGAAGATCAATGAAACCCTGAAACTTCCTCCCAGGAGCATCAAGTGGAATGTGGATTCTGTTCATGCCAAGAGCCTGGTGGCCATCTTACACCTGCTCGTTGCTCTGTCTCAGTATTTCCGCGCACCAATTCGACTCCCAGACCATGTTTCCATCCAAGTGGTTGTGGTCCAGAAACGAGAAGGAATCCTCCAGTCTCGGCAAATCCAAGAGGAAATAACTGGTAACACAGAGGCTCTTTCCGGGAGGCATGAACGTGATGCCTTTGACACCTTGTTCGACCATGCCCCAGACAAGCTGAATGTGGTGAAAAAGACACTCATCACTTTCGTGAACAAGCACCTGAATAAACTGAACCTGGAGGTCACAGAACTGGAAACCCAGTTTGCAGATGGGGTGTACCTGGTGCTGCTCATGGGGCTCCTGGAGGGCTACTTTGTGCCCCTGCACAGCTTCTTCCTGACCCCGGACAGCTTTGAACAGAAGGTCTTGAATGTCTCCTTTGCCTTTGAGCTCATGCAAGATGGAGGGTTGGAAAAGCCAAAACCGCGGCCAGAAGACATAGTCAACTGTGACCTGAAATCTACACTACGAGTGTTGTACAACCTCTTCACCAAGTACCGTAACGTGGAGTGA MGENEDEKQAQAGQVFENFVQASTCKGTLQAFNILTRHLDLDPLDHRNFYSKLKSKVTTWKAKALWYKLDKRGSHKEYKRGKSCTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNNVLHLWPFTIHDLRGLGAKKFYGKFCAGSIDHISIRQLQLILFKVALMLGVEIHVNVEFVKVLEPPEDQENQKIGWRAEFLPTDHSLSEFEFDVIIGADGRRNTLEGFRRKEFRGKLAIAITANFINRNSTAEAKVEEISGVAFIFNQKFFQDLKEETGIDLENIVYYKDCTHYFVMTAKKQSLLDKGVIINDYIDTEMLLCAENVNQDNLLSYAREAADFATNYQLPSLDFAMNHYGQPDVAMFDFTCMYASENAALVRERQAHQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMVKSWNQGTPPLELLAERESLYRLLPQTTPENINKNFEQYTLDPGTRYPNLNSHCVRPHQVKHLYITKELEHYPLERLGSVRRSVNLSRKESDIRPSKLLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRPELINFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELFRGTPLRPVDSWRKNYGENADLSLAKSSISNNYLNLTFPRKRTPRVDGQTGENDMNKRRRKGFTNLDEPSNFSSRSLGSNQECGSSKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVSGIGKPVLCSSSGPPVHSCCPKPEEATPSPSPPLKRQFPSVVVTGHVLRELKQVSAGSECLSRPWRARAKSDLQLGGTENFATLPSTRPRAQALSGVLWRLQQVEEKILQKRAQNLANREFHTKNIKEKAAHLASMFGHGDFPQNKLLSKGLSHTHPPSPPSRLPSPDPAASSSPSTVDSASPARKEKKSPSGFHFHPSHLRTVHPQLTVGKVSSGIGAAAEVLVNLYMNDHRPKAQATSPDLESMRKSFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKFYCKPHFIHCKTNSKQRKRRAELKQQREEEATWQEQEAPRRDTPTESSCAVAAIGTLEGSPPEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE* FALSE TRUE hsa-mir-6124 chr11:12163683-12163767:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30198 PALLD::VMP1 ENSG00000129116.20::ENSG00000062716.13 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1013 FALSE NA FALSE NA PALLD ENSG00000129116.20 protein_coding + + chr4:168497052-168928457:+ chr4:168711923:+ chr4:169418203-169849608:+ chr4:169633074:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr4:168734136,chr4:168734145,chr4:168734175 chr17:59820312,chr17:59820312,chr17:59820312 NA NA chr4:169655287,chr4:169655296,chr4:169655326 chr17:57897673,chr17:57897673,chr17:57897673 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame I-set|271-360|3.2e-29^Ig_3|271-348|2.5e-17^C2-set_2|274-312|0.00036^PKcGMP_CC|274-280|1.3^ig|278-357|5.1e-12^V-set|278-309|0.0031^Ig_2|279-354|2.7e-13^BiPBP_C|286-314|0.069^Ig_6|299-347|0.51^Receptor_2B4|327-355|0.46^Ig_3|440-525|1.6e-16^I-set|441-538|2.6e-24^Ig_2|444-533|1.6e-13^ig|446-535|4.9e-14^V-set|450-539|8.1e-08^C2-set_2|452-489|3.5e-05^BiPBP_C|461-487|0.26^Ig_6|470-547|0.0012^PKcGMP_CC|677-696|0.00054^I-set|777-868|8.3e-21^Ig_3|785-855|1.2e-16^ig|786-858|1.2e-10^Ig_2|787-858|7.6e-11^C2-set_2|793-841|6.9e-05^BiPBP_C|793-847|0.0011^V-set|802-861|6e-06^Ig_6|805-863|0.15^Receptor_2B4|810-861|0.13^I-set|911-1001|2.4e-27^Ig_3|911-988|1e-17^ig|916-994|1.4e-13^Ig_2|920-999|4.5e-12^BiPBP_C|928-970|0.00049^C2-set_2|929-958|0.00083^Receptor_2B4|943-992|0.48^V-set|962-998|0.00034^Ig_6|967-993|0.0025^Ig_3|1009-1088|1.3e-16^I-set|1010-1101|3.7e-22^ig|1017-1090|4.6e-11^Ig_2|1019-1101|8.8e-09^C2-set_2|1028-1067|0.00074^Ig_6|1042-1095|1.1^Receptor_2B4|1043-1103|5.9e-05^V-set|1045-1099|0.00018 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr17] 86 111 86 111 ONLY_REF_SPLICE YES_LDAS 2.5585 GT 1.6895 AG 1.8062 ENST00000261509.10 1-1964 ENST00000262291.9 975-1221 chr4|+|[0]168511505-168512412[1]|[2]168668190-168668368[0]|[1]168681332-168681398[1]|[2]168682998-168683103[2]|[0]168685485-168685559[2]|[0]168690603-168690744[0]|[1]168691269-168691292[0]|[1]168709028-168709147[0]|[1]168711581-168711923[1]<==>chr17|+|[2]59838295-59838397[2]|[0]59839768-59839911[2] atgtcagggacctcctcccatgagtccttctatgactccctctcagacatgcaggaagaaagcaagaatactgacttcttcccgggcctttctgctttcctcagccaggaagagataaacaagagtcttgacctggcccggagagccatagccgactccgaaacagaagattttgactcggaaaaggagatctcgcagattttcagtacttctcctgcaagcctctgtgaacatccttcccataaggagaccaaattgggtgaacacgcctcgaggagacctcaggataacaggtcaacacctgtccagcctctggcagagaaacaaactaagagtatctcttcacctgtttcaaagaggaaacctgccatgtcacccctgctcaccaggcccagctacatccggagcctccgaaaggctgaaaagcgtggtgcaaaaactcccagcacaaacgtaaagcccaaaacgccacatcaaagaaagggtggcccccagagccagctgtgtgacaaggcagctaatttaattgaggagctaacatccatatttaaagccgcaaagccaagaaacagaagcccaaatggggagtcctcgtcaccagacagtgggtacctgtctcctaaaaatcagccgtcagccctgctgagtgcctcagccagccagagccctatggaagaccaaggggagatggaaagagaggtcaagtcccctggggccaggcattgctaccaggacaaccaggacttggcagtgccacacaaccgcaagtctcacccacagccccacagcgccctccacttcccagctgcacctcgattcatccaaaagctgaggagccaagaagtagcagaagggagccgagtttatctggagtgtagagtcactggaaaccccactcctcgagtcagatggttctgtgaagggaaagaactgcacaacactcctgatattcaaatccactgtgagggaggggacctccataccctgatcatagcagaggcctttgaggacgacacaggtcgctacacctgtttggctacgaatcccagcggctcagacacaacatctgctgaggtgttcattgaaggtgccagttcaacagattctgacagtgaaagtttagctttcaaatcaagagctggagctatgccacaagctcaaaagaaaacaacttctgtttccttgacaataggatcatcatctccaaagacaggggtgaccacagctgtgattcaaccactgtctgtccctgtgcaacaggttcacagtccaacttcatatctctgccgacctgatggaaccactactgcctactttcctcctgtttttacaaaggaactgcaaaacacagccgtggcggaaggccaggtggtggttctggagtgccgggtccgtggggcaccccctctgcaggtccagtggtttcggcaagggagtgaaatccaagactctccagatttccgaattctacagaaaaaacctagatctacagctgaacctgaggagatttgcaccctagttatcgctgagactttccctgaagatgcagggatctttacatgttcagcaagaaatgattatggatcagcaaccagcactgcccagctggttgtcacctcagccaacactgaaaactgtagttacgagtcaatgggagaatccaacaatgaccacttccaacactttccacctccccctccaatcttggagacaagttccttggagttggcttcaaagaaaccatctgagatccagcaggtgaacaaccctgagttaggcctgagcagggcagcccttcaaatgcaattcaatgctgctgagagggaaacgaacggagtccatcccagccgtggagtaaatggactgattaacggcaaagctaacagtaataaatctcttccaacaccagctgtcctgctttcacccactaaggagccaccacctctgcttgccaaaccaaaactTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MSGTSSHESFYDSLSDMQEESKNTDFFPGLSAFLSQEEINKSLDLARRAIADSETEDFDSEKEISQIFSTSPASLCEHPSHKETKLGEHASRRPQDNRSTPVQPLAEKQTKSISSPVSKRKPAMSPLLTRPSYIRSLRKAEKRGAKTPSTNVKPKTPHQRKGGPQSQLCDKAANLIEELTSIFKAAKPRNRSPNGESSSPDSGYLSPKNQPSALLSASASQSPMEDQGEMEREVKSPGARHCYQDNQDLAVPHNRKSHPQPHSALHFPAAPRFIQKLRSQEVAEGSRVYLECRVTGNPTPRVRWFCEGKELHNTPDIQIHCEGGDLHTLIIAEAFEDDTGRYTCLATNPSGSDTTSAEVFIEGASSTDSDSESLAFKSRAGAMPQAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQVHSPTSYLCRPDGTTTAYFPPVFTKELQNTAVAEGQVVVLECRVRGAPPLQVQWFRQGSEIQDSPDFRILQKKPRSTAEPEEICTLVIAETFPEDAGIFTCSARNDYGSATSTAQLVVTSANTENCSYESMGESNNDHFQHFPPPPPILETSSLELASKKPSEIQQVNNPELGLSRAALQMQFNAAERETNGVHPSRGVNGLINGKANSNKSLPTPAVLLSPTKEPPPLLAKPKLAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30199 SAV1::MAP4K5 ENSG00000151748.15::ENSG00000012983.12 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1014 FALSE NA FALSE NA SAV1 ENSG00000151748.15 protein_coding - - chr14:50632058-50668306:- chr14:50665179:- chr14:51098776-51135024:- chr14:51131897:- MAP4K5 ENSG00000012983.12 protein_coding - - chr14:50418501-50561126:- chr14:50486194:- chr14:50885219-51027844:- chr14:50952912:- chr14:50655681,chr14:50655688 chr14:50503370,chr14:50503374 NA NA chr14:51122399,chr14:51122406 chr14:50970088,chr14:50970092 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nkap_C|34-71|9.6e-05^WW|128-135|0.13^WW|201-230|3.7e-13^WW|236-265|6.7e-09^Nkap_C|345-373|0.16 Pkinase-PARTIAL|~167-277|7.1e-66^PK_Tyr_Ser-Thr-PARTIAL|~167-272|4.2e-41^ABC1-PARTIAL|~167-168|3.5e-07^Pkinase_fungal-PARTIAL|~167-186|4.6e-07^Kinase-like-PARTIAL|~167-169|3.6e-05^CNH|522-812|1.4e-55 ["SAV1:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.07Mb];NEIGHBORS[70932] 82 93 77.52 87.86 ONLY_REF_SPLICE YES_LDAS 2.1479 GT 1.9219 AG 1.6729 ENST00000324679.5 1-535 ENST00000013125.9 167-2541 chr14|-|[0]50665179-50665619[1]|[0]50667874-50667967[0]<==>chr14|-|[2]50420019-50420106[2]|[1]50423121-50423176[0]|[2]50425907-50425977[1]|[0]50428662-50428754[1]|[0]50429192-50429260[1]|[0]50434394-50434571[0]|[2]50434962-50435065[1]|[0]50437476-50437534[2]|[1]50437894-50438008[1]|[0]50438092-50438094[1]|[0]50440013-50440073[0]|[2]50440362-50440441[1]|[0]50442732-50442816[0]|[2]50443729-50443770[0]|[2]50443939-50444036[1]|[0]50445041-50445194[0]|[2]50446079-50446121[2]|[1]50447414-50447481[0]|[2]50448774-50448832[1]|[0]50456516-50456594[0]|[2]50462665-50462781[0]|[2]50464052-50464133[2]|[1]50466583-50466645[2]|[1]50468651-50468782[2]|[1]50475077-50475149[1]|[0]50476128-50476170[0]|[2]50476259-50476306[0]|[2]50482361-50482416[1]|[0]50485578-50485642[2]|[1]50486104-50486194[1] atgctgtcccgaaagaaaaccaaaaacgaagtgtccaagccggccgaggtgcaggggaagtacgtgaagaaggagacgtcgcctctgcttcggaatcttatgccttcattcatccggcatggtccaacaattccaagacgaactgatatctgtcttccagattcaagccctaatgccttttcaacttctggagatgtagtttcaagaaaccagagtttccttagaactccaattcaaagaacacctcatgaaataatgagaagagaaagcaacagattatctgcaccttcttatcttgccagaagtctagcagatgtccctagagagtatggttcttctcagtcatttgtaacggaagttagttttgctgttgaaaatggagactctggttcccgatattattattcagacaatttttttgatggtcagagaaagcggccacttggagatcgtgcacatgaagactacagatattatgaatacaaccatgatctcttccaaagaatgccacagaatcaggggaggcatgcttcagGAGATGATTTTTCTTTGATTCAACAAGAAATATTTATGGTTAAAGAATGTAAACATTGTAACATCGTTGCCTACTTTGGGAGTTATCTTAGTCGGGAAAAACTATGGATTTGTATGGAATACTGTGGTGGCGGATCACTTCAAGATATTTACCATGTTACTGGACCATTATCAGAATTGCAAATAGCCTATGTATGCAGAGAAACCTTACAGGGTCTTGCCTATTTGCATACTAAAGGCAAAATGCATAGAGATATCAAAGGTGCTAATATTTTATTGACAGACCATGGCGATGTAAAATTAGCTGACTTTGGTGTGGCTGCAAAAATAACAGCTACCATTGCAAAACGAAAATCTTTCATTGGCACCCCTTACTGGATGGCCCCAGAAGTTGCAGCAGTAGAGAAGAATGGTGGCTACAACCAACTCTGTGATATCTGGGCAGTAGGAATAACAGCAATTGAACTTGGAGAACTTCAGCCACCTATGTTTGATCTCCACCCAATGAGGGCTCTCTTCTTAATGTCAAAAAGTAATTTTCAGCCTCCAAAACTAAAGGACAAAACAAAATGGTCATCAACATTCCATAATTTTGTCAAAATAGCACTAACCAAAAACCCAAAAAAAAGACCAACTGCTGAAAGACTTCTGACTCACACTTTTGTTGCACAGCCAGGTCTCTCTAGAGCCCTAGCAGTTGAACTGTTAGACAAAGTGAACAATCCAGATAACCACGCACATTACACTGAAGCAGATGACGATGACTTTGAGCCCCATGCAATCATTCGTCATACCATTAGATCTACAAACAGGAATGCCAGAGCTGAACGGACAGCTTCAGAAATAAATTTTGACAAATTACAATTTGAACCTCCTCTGAGAAAAGAAACAGAAGCACGAGATGAAATGGGATTGTCATCAGACCCAAATTTCATGTTACAGTGGAATCCTTTTGTTGATGGTGCAAATACTGGCAAATCAACCTCAAAACGTGCAATACCACCTCCCCTACCTCCTAAGCCAAGGATAAGCAGTTACCCTGAAGACAACTTTCCGGATGAAGAAAAAGCATCAACCATAAAACATTGTCCTGATTCAGAAAGCAGAGCTCCCCAAATTCTCAGAAGACAGAGTAGCCCAAGTTGTGGGCCTGTGGCAGAGACTTCTTCTATTGGAAATGGTGATGGTATTTCAAAACTGATGAGTGAAAATACAGAAGGATCAGCACAAGCACCACAGTTACCACGAAAAAAGGACAAACGAGACTTCCCTAAACCAGCCATCAATGGCCTTCCACCCACCCCAAAAGTTCTGATGGGAGCATGCTTTTCAAAAGTTTTTGATGGCTGTCCTTTGAAAATTAATTGTGCAACATCCTGGATACATCCTGATACAAAAGATCAGTACATTATTTTTGGAACTGAAGATGGTATTTACACACTGAATCTCAATGAGCTACATGAGGCAACGATGGAACAGTTATTTCCACGGAAGTGTACTTGGCTGTATGTTATCAATAATACTTTAATGTCATTATCAGAAGGAAAAACCTTTCAGCTCTACTCTCACAATCTTATAGCTTTGTTTGAACATGCCAAAAAACCAGGATTAGCTGCCCATATTCAAACTCACAGGTTTCCAGACCGAATACTACCAAGAAAATTCGCTTTAACAACAAAGATTCCTGATACAAAAGGCTGCCACAAATGTTGCATAGTCAGAAACCCTTACACGGGACATAAATACCTCTGTGGAGCTTTACAGTCTGGAATTGTTTTACTTCAGTGGTATGAGCCAATGCAGAAATTCATGTTGATAAAGCACTTTGATTTTCCTTTGCCAAGTCCTTTGAATGTTTTTGAAATGCTGGTGATACCTGAACAGGAATACCCTATGGTCTGTGTAGCTATTAGCAAAGGCACTGAATCGAATCAGGTAGTTCAGTTTGAGACAATCAATTTGAACTCTGCATCTTCATGGTTTACAGAAATTGGTGCAGGCAGCCAGCAGTTAGATTCCATTCATGTAACACAGTTGGAGAGAGATACCGTTTTAGTGTGTTTAGACAAATTTGTGAAAATTGTAAATCTACAAGGAAAATTAAAATCAAGTAAGAAACTGGCCTCTGAGTTAAGTTTTGATTTTCGCATTGAATCTGTAGTATGCCTTCAAGACAGTGTGTTGGCTTTCTGGAAACATGGGATGCAGGGTAAAAGCTTCAAGTCAGATGAGGTTACCCAGGAGATTTCAGATGAAACAAGAGTTTTCCGCTTATTAGGATCAGACAGGGTTGTCGTTTTGGAAAGTAGGCCAACAGAAAATCCTACTGCACACAGCAATCTCTACATCTTGGCTGGACATGAAAATAGTTACTAA MLSRKKTKNEVSKPAEVQGKYVKKETSPLLRNLMPSFIRHGPTIPRRTDICLPDSSPNAFSTSGDVVSRNQSFLRTPIQRTPHEIMRRESNRLSAPSYLARSLADVPREYGSSQSFVTEVSFAVENGDSGSRYYYSDNFFDGQRKRPLGDRAHEDYRYYEYNHDLFQRMPQNQGRHASGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHTKGKMHRDIKGANILLTDHGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELGELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKIALTKNPKKRPTAERLLTHTFVAQPGLSRALAVELLDKVNNPDNHAHYTEADDDDFEPHAIIRHTIRSTNRNARAERTASEINFDKLQFEPPLRKETEARDEMGLSSDPNFMLQWNPFVDGANTGKSTSKRAIPPPLPPKPRISSYPEDNFPDEEKASTIKHCPDSESRAPQILRRQSSPSCGPVAETSSIGNGDGISKLMSENTEGSAQAPQLPRKKDKRDFPKPAINGLPPTPKVLMGACFSKVFDGCPLKINCATSWIHPDTKDQYIIFGTEDGIYTLNLNELHEATMEQLFPRKCTWLYVINNTLMSLSEGKTFQLYSHNLIALFEHAKKPGLAAHIQTHRFPDRILPRKFALTTKIPDTKGCHKCCIVRNPYTGHKYLCGALQSGIVLLQWYEPMQKFMLIKHFDFPLPSPLNVFEMLVIPEQEYPMVCVAISKGTESNQVVQFETINLNSASSWFTEIGAGSQQLDSIHVTQLERDTVLVCLDKFVKIVNLQGKLKSSKKLASELSFDFRIESVVCLQDSVLAFWKHGMQGKSFKSDEVTQEISDETRVFRLLGSDRVVVLESRPTENPTAHSNLYILAGHENSY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase kinase 5 STE STE20 KHS Q9Y4K4 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30203 FRS2::HECTD4 ENSG00000166225.9::ENSG00000173064.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1015 TRUE 1771 TRUE 701 FRS2 ENSG00000166225.9 protein_coding + + chr12:69470349-69579793:+ chr12:69532056:+ chr12:69864129-69973573:+ chr12:69925836:+ HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112219489:- chr12:112597992-112820243:- chr12:112657293:- chr12:69554573,chr12:69554574 chr12:112221062,chr12:112221061 NA NA chr12:69948353,chr12:69948354 chr12:112658866,chr12:112658865 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FRS2:FoundationOne_panel","FRS2:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:42.58Mb] 14 13 14 7 ONLY_REF_SPLICE YES_LDAS 0.2727 GT 1.8295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-6861 chr12:112163258-112163321:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30206 FRS2::HECTD4 ENSG00000166225.9::ENSG00000173064.14 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1016 TRUE 1771 TRUE 701 FRS2 ENSG00000166225.9 protein_coding + + chr12:69470349-69579793:+ chr12:69537983:+ chr12:69864129-69973573:+ chr12:69931763:+ HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112219489:- chr12:112597992-112820243:- chr12:112657293:- chr12:69554573,chr12:69554574 chr12:112221062,chr12:112221061 NA NA chr12:69948353,chr12:69948354 chr12:112658866,chr12:112658865 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FRS2:FoundationOne_panel","FRS2:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:42.58Mb] 9 16 9 9 ONLY_REF_SPLICE YES_LDAS 0.2338 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-6861 chr12:112163258-112163321:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30207 MAD1L1::ENSG00000288098 ENSG00000002822.16::ENSG00000288098.1 786O SRR8615642 SRR8639133 KIDNEY carcinoma (clear_cell_renal_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:2229984:- chr7:1855429-2272878:- chr7:2269619:- ENSG00000288098 ENSG00000288098.1 lncRNA + + chrX:141934496-142740581:+ chrX:142546381:+ chrX:141022282-141828367:+ chrX:141634167:+ chr7:2224667,chr7:2224672 chrX:142409507,chrX:142409502 NA NA chr7:2264302,chr7:2264307 chrX:141497293,chrX:141497288 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MAD1L1:Oncogene"] 7 4 7 3.5 ONLY_REF_SPLICE YES_LDAS 0.1364 GT 1.8256 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30226 ITCH::MAK16 ENSG00000078747.17::ENSG00000198042.11 8305C SRR8615645 SRR8639136 THYROID carcinoma (anaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 1023 FALSE NA FALSE NA ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34369470:+ chr20:32951041-33099578:+ chr20:32957276:+ MAK16 ENSG00000198042.11 protein_coding + + chr8:33485182-33501262:+ chr8:33496625:+ chr8:33342700-33358780:+ chr8:33354143:+ chr20:34468715 chr8:33495857 NA NA chr20:33056520 chr8:33353375 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr8] 9 4 9 3.6 ONLY_REF_SPLICE YES_LDAS 0.1505 GT 1.9899 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30232 YBX1::CCDC30 ENSG00000065978.19::ENSG00000186409.19 A101D SRR8615646 SRR8639135 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA YBX1 ENSG00000065978.19 protein_coding + + chr1:42682418-42703805:+ chr1:42697262:+ chr1:43148089-43169476:+ chr1:43162933:+ CCDC30 ENSG00000186409.19 protein_coding + + chr1:42463221-42657190:+ chr1:42592090:+ chr1:42928892-43122861:+ chr1:43057761:+ chr1:42699820,chr1:42699819 chr1:42591745,chr1:42591741 NA NA chr1:43165491,chr1:43165490 chr1:43057416,chr1:43057412 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YBX1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[27763] 170 77 169.77 55.99 ONLY_REF_SPLICE YES_LDAS 2.5491 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30249 SPTBN2::ZDHHC24 ENSG00000173898.15::ENSG00000174165.8 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SPTBN2 ENSG00000173898.15 protein_coding - - chr11:66682497-66744670:- chr11:66704598:- chr11:66449968-66512141:- chr11:66472069:- ZDHHC24 ENSG00000174165.8 protein_coding - - chr11:66520637-66546235:- chr11:66524276:- chr11:66288108-66313706:- chr11:66291747:- chr11:66702588,chr11:66702591 chr11:66524568,chr11:66524568 NA NA chr11:66470059,chr11:66470062 chr11:66292039,chr11:66292039 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.14Mb] 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1768 GT 1.8295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30252 TMED8::PLEKHG4B ENSG00000100580.8::ENSG00000153404.15 SNU475 SRR8615650 SRR8670715 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1028 FALSE NA FALSE NA TMED8 ENSG00000100580.8 protein_coding - - chr14:77335029-77377094:- chr14:77376936:- chr14:77801372-77843437:- chr14:77843279:- PLEKHG4B ENSG00000153404.15 protein_coding + + chr5:92168-189972:+ chr5:113251:+ chr5:92283-190087:+ chr5:113366:+ chr14:77372951 chr5:94450 NA NA chr14:77839294 chr5:94565 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none RhoGEF|710-754|2.9^RhoGEF|1165-1309|9.7e-33^PH_10|1355-1393|3.9e-05^PH|1376-1457|3.8e-08^IQ_SEC7_PH|1376-1413|1.3e-06^DUF3772|1571-1593|8.3e-05 ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr5] 8 4 8 4 ONLY_REF_SPLICE YES_LDAS 0.1414 GT 1.7056 AG 1.9219 ENST00000216468.8 1-118 ENST00000637938.2 46-4884 chr14|-|[0]77376936-77377053[0]<==>chr5|+|[0]113251-113448[2]|[0]139483-140716[0]|[1]143047-143256[0]|[1]143380-143503[1]|[2]144827-144920[2]|[0]151513-151599[2]|[0]154875-154991[2]|[0]155345-155443[2]|[0]156071-156210[1]|[2]156773-156911[2]|[0]161783-161944[2]|[0]162722-163548[1]|[2]169340-169592[2]|[0]171043-171132[2]|[0]171214-171444[2]|[0]172897-173067[2]|[0]173918-174098[0]|[1]181514-181675[0]|[1]182004-182323[2] atgtctgacctgcaggcggctgaggggccgggctcctggagccccacagcccgcccagggtcggctggcggcgtcggggactgccagggagtggaggggagccaggcggccgcctcagGATCTGGAATCTCTTGATGCCTGTATCCAGAGGACGCTCTCTGCCTTGTACCCACCGTTTGAAGCCACGGCAGCCACGGTGCTCTGGCAGCTGTTCAGCGTGGCCGAGAGGTGCCACGGTGGGGACGGGCTGCACTGCCTCACCAGCTTCCTCCTCCCAGCCAAGAGGGCCCTGCAGCACCTGCAGCAGGAAGCCTGTGCCAGGTACAGGGGTCTGGTCTTCCTGCACCCAGGCTGGCCGCTGTGCGCCCATGAGAAGGTGGTGGTGCAGCTGGCGTCCCTGCACGGAGTCAGGCTCCAGCCCGGGGACTTCTACCTGCAGGTCACGTCGGCGGGGAAGCAGTCAGCTAGACTGGTCTTGAAATGCCTGTCCCGGCTGGGAAGAGGCACAGAGGAAGTCACCGTCCCTGAGGCCATGTATGGCTGTGTCTTCACGGGGGCGTTCCTGGAGTGGGTGAACCGGGAGCGGCGCCATGTCCCCCTGCAAACCTGCTTGCTGACCTCAGGCTTGGCCGTCCACCGAGCCCCGTGGAGCGACGTCACTGACCCTGTCTTTGTCCCCAGCCCTGGAGCCATCCTGCAGAGCTACTCCAGCTGCACAGGTCCTGAGCGGCTGCCCAGCAGCCCCTCAGAGGCCCCAGTCCCCACCCAAGCCACAGCAGGCCCCCATTTCCAGGGAAGCGCCTCTTGCCCCGACACCCTGACCTCACCCTGCCGCCGAGGGCATACGGGCAGCGACCAGCTCAGGCACCTTCCTTATCCAGAAAGAGCCGAGCTGGGAAGCCCCAGGACCCTGTCTGGAAGCTCAGACAGGGACTTCGAAAAGGTCAGCCCCTCAGAGCAGGGCCCACGGATGCCCCCTGAGAACTGTGGGGGGTCGGGGGAGAGGCCGGACCCCATGGACCAGGAGGACAGACCCAAGGCCCTCACCTTCCACACAGACCTGGGCATCCCGAGCAGCAGGAGGCGGCCGCCGGGGGACCCCACTTGTGTGCAGCCTAGACGCTGGTTCAGGGAGTCGTACATGGAAGCCTTGCGGAACCCCATGCCCCTGGGCAGCTCTGAGGAGGCCCTCGGGGACCTGGCCTGCAGCTCCCTGACTGGAGCCAGCAGGGACCTGGGGACTGGGGCAGTAGCCAGTGGGACCCAGGAGGAAACCTCTGGCCCCCGGGGAGACCCCCAACAGACCCCAAGTCTAGAGAAGGAGAGGCACACACCCAGCCGGACAGGTCCAGGAGCTGCAGGGCGGACTCTTCCCAGGAGATCTCGGTCCTGGGAAAGGGCACCCAGAAGCTCCAGAGGGGCCCAGGCTGCAGCCTGCCACACCTCCCACCACTCAGCAGGCTCCAGGCCTGGGGGCCACCTAGGAGGACAAGCTGTGGGGACCCCAAACTGTGTCCCAGTAGAGGGTCCCGGCTGCACCAAAGAGGAAGACGTTCTTGCATCCTCAGCCTGTGTCAGCACAGACGGCGGCAGCCTCCATTGCCACAACCCCAGCGGGCCTTCCGATGTGCCTGCCCGGCAGCCACACCCCGAGCAAGAAGGGTGGCCACCCGGCACAGGAGACTTCCCCAGCCAGGTGCCCAAGCAGGTGCTGGACGTCAGTCAGGAGCTGCTGCAGTCCGGGGTCGTCACCCTCCCAGGGACCCGAGACCGTCATGGCAGAGCAGTGGTGCAGGTCCGCACCAGGAGCCTGCTCTGGACCAGGGAACACTCGTCCTGTGCTGAGCTGACCCGCCTGCTGCTGTACTTCCATAGCATCCCCAGGAAAGAGGTCCGGGACCTGGGGCTGGTTGTCCTGGTGGATGCACGCAGGAGTCCAGCTGCCCCTGCCGTCTCCCAGGCCCTCTCAGGATTGCAGAACAACACATCTCCTATAATTCATAGTATCTTGCTGTTGGTAGATAAAGAATCTGCATTTAGGCCTGACAAGGATGCAATAATTCAGTGTGAGGTCGTGAGCTCCCTGAAGGCCGTGCACAAATTTGTTGACAGCTGCCAGCTGACCGCAGACCTCGACGGCTCCTTTCCCTACAGCCATGGTGACTGGATCTGCTTCCGTCAGAGGCTGGAACACTTCGCTGCAAACTGTGAAGAAGCCATCATTTTCCTACAGAATTCATTCTGCTCCCTGAACACCCACAGAACCCCAAGAACAGCCCAGGAAGTCGCCGAGTTAATTGACCAGCATGAGACGATGATGAAGCTTGTCCTGGAAGACCCACTGCTTGTGTCTCTCAGGCTGGAGGGGGGCACCGTCCTGGCGCGGCTGAGGAGAGAAGAGCTTGGCACAGAAGACAGCCGGGACACCCTGGAGGCCGCCACAAGCCTGTACGACCGAGTGGATGAGGAGGTGCACAGGCTGGTCCTCACCTCGAACAATCGTCTCCAGCAGCTGGAGCACCTCCGGGAGCTGGCGTCACTCCTGGAAGGGAATGACCAGCAATCCTGCCAGAAAGGACTACAGCTGGCGAAGGAGAACCCGCAACGTACAGAGGAAATGGTCCAGGATTTCAGAAGGGGCCTGAGCGCCGTGGTCAGCCAGGCTGAGTGCAGGGAGGGAGAGCTGGCCAGGTGGACCCGCTCGTCCGAGTTGTGCGAGACGGTGAGCAGCTGGATGGGGCCCCTGGACCCGGAGGCTTGTCCCTCCTCACCCGTGGCTGAGTGTTTGAGGAGCTGTCACCAGGAGGCTACCTCGGTGGCTGCAGAGGCCTTCCCCGGGGCAGGTGTGGCAGTGCTGAAGCCTCATGCCCTGGGGAAACCGTGGGCATCACAGCAAGACCTGTGGCTGCAGTACCCCCAGACCCGGCTCCGTCTGGAAGAGGCCCTTTCTGAGGCTGCCCCAGACCCCAGCTTACCGCCCCTTGCCCAGAGCCCCCCAAAGCATGAGCGTGCCCAGGAGGCCATGAGGAGGCACCAGAAGCCACCCTCATTCCCCAGCACGGACAGTGGGGGTGGTGCCTGGGAACCTGCGCAACCACTGTCCGGCCTCCCTGGACGAGCGCTTCTGTGTGGACAGGACGGGGAGACCCTGCGCCCAGGGCTGTGTGCTCTGTGGGACCCACTGTCCCTCCTCAGGGGCCTTCCAGGGGCAGGGGCCACCACGGCCCACCTGGAGGACAGCTCTGCCTGTTCCTCTGAGCCCACCCAGACCCTGGCCAGCCGCCCCAGGAAACATCCCCAGAAGAAAATGATAAAGAAAACGCAAAGTTTCGAGATACCTCAGCCCGACAGTGGCCCCAGGGACTCCTGCCAGCCAGACCATACTAGTGTCTTCAGCAAGGGCCTGGAGGTAACCAGCACTGTAGCCACAGAGAAGAAGCTCCCGCTGTGGCAGCATGCCAGGAGCCCCCCGGTCACTCAGAGCCGGAGTCTGTCCTCCCCCTCGGGGCTCCACCCTGCTGAGGAGGATGGGAGGCAGCAGGTGGGCAGCAGCCGACTGAGGCACATCATGGCCGAGATGATCGCCACAGAGAGGGAGTACATTCGGTGCTTAGGATACGTCATTGACAACTATTTTCCAGAAATGGAAAGAATGGACTTGCCCCAGGGCCTTCGAGGGAAGCACCACGTTATTTTCGGCAACTTGGAGAAGCTCCACGACTTCCACCAGCAGCACTTCCTCCGGGAGCTGGAGCGCTGCCAGCACTGCCCCTTGGCCGTGGGCCGCAGTTTCCTGAGACACGAAGAGCAGTTTGGGATGTACGTGATCTACAGCAAAAACAAGCCGCAGTCGGATGCCCTGCTCAGCAGCCATGGCAACGCCTTCTTCAAGGACAAGCAGCGGGAGCTAGGTGACAAAATGGACCTGGCCTCCTACCTGCTGCGGCCCGTGCAGCGTGTGGCCAAGTACGCGCTGCTACTCCAGGACCTGCTCAAGGAGGCCAGCTGTGGCCTGGCCCAGGGGCAGGAGCTGGGCGAGCTCCGAGCCGCCGAGGTCGTGGTCTGCTTCCAGCTGCGTCACGGCAATGACCTGCTGGCCATGGACGCCATCCGCGGCTGTGACGTGAATTTGAAGGAACAGGGGCAGCTGAGATGCCGGGATGAGTTTATCGTTTGCTGCGGGAGGAAGAAGTATCTGAGGCATGTGTTCCTCTTTGAAGACCTCATCCTGTTTAGCAAGACCCAGAAGGTGGAGGGCAGCCACGACGTCTACCTGTACAAGCAGTCCTTCAAGACGGCCGAGATCGGGATGACAGAGAACGTCGGGGACAGTGGCTTGAGGTTTGAGATTTGGTTTCGCAGGCGGCGGAAATCTCAGGACACCTACATTCTCCAAGCAAGCTCGGCAGAGGTCAAGAGTGCATGGACCGATGTCATAGGGAGGATCCTGTGGCGGCAGGCACTAAAGAGCAGAGAACTCAGAATCCAAGAAATGGCATCCATGGGTATAGGCAACCAGCCATTCATGGATGTCAAGCCCAGAGACCGGACCCCTGACTGTGCAGTGATAAGCGACCGGGCTCCCAAATGTGCAGTGATGAGCGACCGAGTCCCCGACAGCATCGTCAAGGGCACAGAGTCACAAATGAGAGGGTCCACAGCGGTGTCCTCCTCTGACCACGCCGCCCCCTTCAAGCGACCACACTCCACCATCTCAGACAGCAGCACCTCCTCTTCTAGCAGCCAGTCCTCCTCCATCCTGGGGTCGCTGGGCCTGCTTGTGTCCTCCAGCCCAGCCCACCCGGGCCTATGGAGCCCTGCCCACAGCCCCTGGTCATCTGATATCAGAGCCTGCGTCGAGGAAGATGAGCCAGAGCCAGAACTAGAGACGGGCACCCAGGCTGCAGTGTGTGAGGGGGCTCCTGCTGTGCTGCTGAGCCGCACACGCCAGGCCTGA MSDLQAAEGPGSWSPTARPGSAGGVGDCQGVEGSQAAASGSGIS*CLYPEDALCLVPTV*SHGSHGALAAVQRGREVPRWGRAALPHQLPPPSQEGPAAPAAGSLCQVQGSGLPAPRLAAVRP*EGGGAAGVPARSQAPARGLLPAGHVGGEAVS*TGLEMPVPAGKRHRGSHRP*GHVWLCLHGGVPGVGEPGAAPCPPANLLADLRLGRPPSPVERRH*PCLCPQPWSHPAELLQLHRS*AAAQQPLRGPSPHPSHSRPPFPGKRLLPRHPDLTLPPRAYGQRPAQAPSLSRKSRAGKPQDPVWKLRQGLRKGQPLRAGPTDAP*ELWGVGGEAGPHGPGGQTQGPHLPHRPGHPEQQEAAAGGPHLCAA*TLVQGVVHGSLAEPHAPGQL*GGPRGPGLQLPDWSQQGPGDWGSSQWDPGGNLWPPGRPPTDPKSREGEAHTQPDRSRSCRADSSQEISVLGKGTQKLQRGPGCSLPHLPPLSRLQAWGPPRRTSCGDPKLCPSRGSRLHQRGRRSCILSLCQHRRRQPPLPQPQRAFRCACPAATPRARRVATRHRRLPQPGAQAGAGRQSGAAAVRGRHPPRDPRPSWQSSGAGPHQEPALDQGTLVLC*ADPPAAVLP*HPQERGPGPGAGCPGGCTQESSCPCRLPGPLRIAEQHISYNS*YLAVGR*RICI*A*QGCNNSV*GRELPEGRAQIC*QLPADRRPRRLLSLQPW*LDLLPSEAGTLRCKL*RSHHFPTEFILLPEHPQNPKNSPGSRRVN*PA*DDDEACPGRPTACVSQAGGGHRPGAAEERRAWHRRQPGHPGGRHKPVRPSG*GGAQAGPHLEQSSPAAGAPPGAGVTPGRE*PAILPERTTAGEGEPATYRGNGPGFQKGPERRGQPG*VQGGRAGQVDPLVRVVRDGEQLDGAPGPGGLSLLTRG*VFEELSPGGYLGGCRGLPRGRCGSAEASCPGETVGITARPVAAVPPDPAPSGRGPF*GCPRPQLTAPCPEPPKA*ACPGGHEEAPEATLIPQHGQWGWCLGTCATTVRPPWTSASVWTGRGDPAPRAVCSVGPTVPPQGPSRGRGHHGPPGGQLCLFL*AHPDPGQPPQETSPEENDKENAKFRDTSARQWPQGLLPARPY*CLQQGPGGNQHCSHREEAPAVAACQEPPGHSEPESVLPLGAPPC*GGWEAAGGQQPTEAHHGRDDRHREGVHSVLRIRH*QLFSRNGKNGLAPGPSREAPRYFRQLGEAPRLPPAALPPGAGALPALPLGRGPQFPETRRAVWDVRDLQQKQAAVGCPAQQPWQRLLQGQAAGAR*QNGPGLLPAAARAACGQVRAATPGPAQGGQLWPGPGAGAGRAPSRRGRGLLPAASRQ*PAGHGRHPRL*REFEGTGAAEMPG*VYRLLREEEVSEACVPL*RPHPV*QDPEGGGQPRRLPVQAVLQDGRDRDDRERRGQWLEV*DLVSQAAEISGHLHSPSKLGRGQECMDRCHREDPVAAGTKEQRTQNPRNGIHGYRQPAIHGCQAQRPDP*LCSDKRPGSQMCSDERPSPRQHRQGHRVTNERVHSGVLL*PRRPLQATTLHHLRQQHLLF*QPVLLHPGVAGPACVLQPSPPGPMEPCPQPLVI*YQSLRRGR*ARARTRDGHPGCSV*GGSCCAAEPHTPGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30264 HELLS::EYS ENSG00000119969.16::ENSG00000188107.15 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE FALSE TRUE 1030 FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:64082002:- chr6:64429876-66417119:- chr6:64791895:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr6] 16 11 16 11 ONLY_REF_SPLICE YES_LDAS 0.2558 GT 1.6895 AG 1.8295 ENST00000698673.1 1-153 ENST00000370621.7 6425-9498 chr10|+|[0]94545922-94545952[0]|[1]94546377-94546498[2]<==>chr6|-|[2]63720596-63721797[1]|[0]63726519-63726680[1]|[0]63741913-63741975[1]|[0]63762461-63762633[2]|[1]63778006-63778180[1]|[0]63788105-63788249[0]|[2]63789058-63789224[1]|[0]63806190-63806372[1]|[0]63864186-63864358[2]|[1]63984383-63984603[0]|[2]63999075-63999183[2]|[1]64066338-64066491[1]|[0]64081856-64082002[1] atgccagcggaacggcccgcgggcagcggcggctcggaggctccagcaatggttgaacaactggacactgctgtgattaccccggccatgctagaagaggaagaacagcttgaagctgctggactagagagagagcggaagatgctggaaaagATGCAGGTTTATTCTTTCCATCTTTCAATGGGAATTCCTATTTAGAACTGCCCTTTTTGAAGTTTGTCCTGGAGAAGGAACATAACAGAACTGTTACCATCTACTTGACTATAAAAACAAACAGTTTAAATGGAACTATTCTTTACAGTAATGGGAATAATTGTGGAAAGCAGTTTCTTCATTTATTTCTTGTGGAAGGAAGGCCATCAGTTAAATATGGGTGTGGAAATTCTCAAAATATTTTGACTGTTTCTGCTAATTACAGCATTAACACAAATGCATTCACCCCTATCACAATACGCTACACAACGCCTGTTGGCAGCCCTGGAGTTGTTTGTATGATTGAAATGACTGCAGATGGAAAACCTCCAGTACAGAAGAAAGACACAGAGATTTCCCATGCCTCTCAGGCATATTTTGAATCAATGTTCCTTGGCCATATTCCTGCAAATGTTCAAATTCATAAGAAAGCAGGTCCTGTTTATGGGTTCAGGGGCTGCATTCTAGACCTTCAAGTAAACAACAAAGAATTCTTCATCATCGATGAAGCACGACATGGAAAGAATATTGAGAACTGCCACGTCCCTTGGTGTGCTCATCATCTGTGCCGCAACAATGGCACCTGCATCAGTGATAATGAAAATCTGTTTTGTGAGTGTCCAAGGCTGTATTCAGGCAAGCTGTGCCAGTTTGCAAGTTGTGAAAACAACCCATGTGGAAATGGTGCCACCTGTGTTCCAAAATCCGGAACAGATATTGTCTGCCTCTGCCCATATGGGAGGTCTGGACCCCTCTGCACTGATGCTATTAATATTACTCAGCCAAGGTTCAGTGGCACAGATGCCTTTGGATACACCTCATTCCTGGCTTATTCACGGATCTCAGACATCAGCTTCCATTATGAATTCCACCTGAAGTTTCAGCTGGCAAACAACCACTCAGCACTGCAAAATAACTTGATATTTTTTACTGGACAGAAAGGCCATGGGTTGAATGGCGATGACTTCCTGGCTGTGGGCCTGCTCAATGGCAGTGTGGTTTATAGTTATAACCTGGGGTCTGGCATAGCAAGCATCAGGAGCGAGCCCCTCAATCTGAGCCTTGGAGTCCACACTGTTCATCTGGGCAAGTTCTTCCAAGAGGGCTGGCTGAAGGTAGATGATCATAAAAATAAATCCATTATCGCCCCAGGAAGACTGGTTGGTCTCAATGTCTTCAGTCAGTTTTATGTAGGTGGCTACAGTGAATACACTCCAGATCTCTTACCAAATGGAGCAGATTTTAAAAATGGTTTTCAAGGCTGTATTTTCACTCTTCAAGTTCGCACTGAGAAGGATGGCCATTTCAGAGGACTGGGAAATCCTGAGGGCCACCCAAATGCTGGACGCAGTGTTGGCCAGTGTCATGCTTCTCCCTGCAGTTTAATGAAATGTGGCAATGGTGGGACATGCATAGAGAGTGGAACTAGTGTTTACTGCAATTGTACCACTGGGTGGAAAGGATCATTCTGCACAGAGACAGTTTCTACCTGTGATCCTGAACATGACCCTCCACACCACTGTAGCAGAGGAGCAACCTGCATTTCATTACCTCATGGATACACCTGTTTCTGTCCTCTAGGAACCACTGGAATCTACTGTGAACAAGCACTTATCCTCATTGTGATCTTGGAAAAGCCAAAACCAGCAGAACGGAAAGTGAAGAAGGAGGCTTTATCCATAAGTGATCCATCTTTCAGAAGCAATGAGTTATCCTGGATGTCTTTTGCTTCCTTTCATGTTCGAAAAAAGACACATATTCAATTGCAGTTTCAGCCTCTCGCTGCAGATGGTATCCTATTTTATGCTGCACAACACTTAAAAGCCCAATCAGGTGATTTTTTATGCATCTCTTTAGTAAATAGTTCCGTTCAACTTCGCTACAACCTTGGCGACAGAACTATCATTCTAGAAACTCTCCAAAAAGTAACTATAAACGGAAGTACTTGGCATATAATAAAAGCAGGAAGAGTTGGTGCAGAAGGCTACCTGGATCTAGATGGGATAAATGTAACAGAAAAGGCCTCCACTAAAATGAGTTCTCTGGACACAAATACAGACTTCTATATTGGAGGAGTATCTTCTTTAAATCTTGTAAATCCCATGGCAATAGAAAATGAACCTGTAGGTTTTCAAGGCTGTATCCGACAAGTTATCATAAATAATCAAGAATTACAATTAACTGAATTTGGAGCAAAAGGTGGCTCAAATGTAGGTGACTGTGATGGGACAGCCTGTGGGTACAACACATGCAGAAATGGAGGTGAATGTACAGTAAATGGCACAACTTTTTCTTGCAGATGTTTGCCAGATTGGGCTGGAAATACATGTAACCAGTCTGTGTCCTGTTTGAATAATCTTTGCCTCCACCAATCTTTATGTATACCTGACCAATCATTTTCTTACAGTTGCCTGTGTACTTTGGGTTGGGTGGGAAGGTATTGTGAAAACAAAACTTCATTTTCAACTGCAAAATTTATGGGTAATTCTTACATTAAATACATTGATCCAAATTATAGAATGAGAAACCTCCAGTTCACTACTATATCCTTAAATTTCAGTACCACTAAAACAGAAGGTCTAATTGTATGGATGGGAATAGCTCAAAATGAAGAAAATGATTTTCTGGCAATTGGTCTCCATAATCAGACCTTGAAAATAGCAGTTAACTTGGGAGAAAGAATCTCTGTGCCTATGAGCTATAACAATGGCACATTCTGTTGTAATAAATGGCACCATGTAGTTGTAATTCAAAATCAGACTCTTATCAAGGCCTACATAAATAACAGTCTAATTCTTTCCGAGGATATTGATCCACATAAAAACTTTGTGGCTCTAAACTATGATGGCATTTGTTATCTAGGGGGCTTTGAATATGGTAGAAAGGTAAATATCGTTACTCAAGAGATTTTTAAAACCAATTTTGTTGGCAAAATTAAAGATGTTGTATTTTTTCAGGAACCAAAAAACATTGAACTAATTAAATTAGAAGGATACAATGTTTATGATGGAGATGAACAAAATGAGGTTACATAA MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKMQVYSFHLSMGIPI*NCPF*SLSWRRNITELLPST*L*KQTV*MELFFTVMGIIVESSFFIYFLWKEGHQLNMGVEILKIF*LFLLITALTQMHSPLSQYATQRLLAALELFV*LK*LQMENLQYRRKTQRFPMPLRHILNQCSLAIFLQMFKFIRKQVLFMGSGAAF*TFK*TTKNSSSSMKHDMERILRTATSLGVLIICAATMAPASVIMKICFVSVQGCIQASCASLQVVKTTHVEMVPPVFQNPEQILSASAHMGGLDPSALMLLILLSQGSVAQMPLDTPHSWLIHGSQTSASIMNST*SFSWQTTTQHCKIT*YFLLDRKAMG*MAMTSWLWACSMAVWFIVITWGLA*QASGASPSI*ALESTLFIWASSSKRAG*R*MIIKINPLSPQEDWLVSMSSVSFM*VATVNTLQISYQMEQILKMVFKAVFSLFKFALRRMAISEDWEILRATQMLDAVLASVMLLPAV**NVAMVGHA*RVELVFTAIVPLGGKDHSAQRQFLPVILNMTLHTTVAEEQPAFHYLMDTPVSVL*EPLESTVNKHLSSL*SWKSQNQQNGK*RRRLYP*VIHLSEAMSYPGCLLLPFMFEKRHIFNCSFSLSLQMVSYFMLHNT*KPNQVIFYASL**IVPFNFATTLATELSF*KLSKK*L*TEVLGI**KQEELVQKATWI*MG*M*QKRPPLK*VLWTQIQTSILEEYLL*IL*IPWQ*KMNL*VFKAVSDKLS*IIKNYN*LNLEQKVAQM*VTVMGQPVGTTHAEMEVNVQ*MAQLFLADVCQIGLEIHVTSLCPV*IIFASTNLYVYLTNHFLTVACVLWVGWEGIVKTKLHFQLQNLWVILTLNTLIQIIE*ETSSSLLYP*ISVPLKQKV*LYGWE*LKMKKMIFWQLVSIIRP*K*QLTWEKESLCL*AITMAHSVVINGTM*L*FKIRLLSRPT*ITV*FFPRILIHIKTLWL*TMMAFVI*GALNMVER*ISLLKRFLKPILLAKLKMLYFFRNQKTLN*LN*KDTMFMMEMNKMRLH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30266 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 SNU449 SRR8615655 SRR8670714 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1031 FALSE NA FALSE NA MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97888242:+ chr8:98881068-99048952:+ chr8:98900470:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97912978,chr8:97912975 chr8:98071799,chr8:98071793 NA NA chr8:98925206,chr8:98925203 chr8:99084027,chr8:99084021 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VWA-PARTIAL|57-142~|6.8e-56^VWA_2-PARTIAL|58-142~|6.9e-17 DUF4573|94-267|5.2e-72^DUF4573|297-338|0.011 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.03Mb];NEIGHBORS[27595] 9 7 9 7 ONLY_REF_SPLICE YES_LDAS 0.1516 GT 1.9086 AG 1.8892 ENST00000520016.5 1-142 ENST00000318528.8 59-1125 chr8|+|[0]97888101-97888242[0]<==>chr8|+|[1]98089076-98090029[0]|[1]98093221-98093333[2] atggaaaagatgctcgcaggctgctttctgctgatcctcggacagatcgtcctcctccctgccgaggccagggagcggtcacgtgggaggtccatctctaggggcagacacgctcggacccacccgcagacggcccttctggTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAGGCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCTCTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATAGCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAAATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAAAGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACTCCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCATATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAG MEKMLAGCFLLILGQIVLLPAEARERSRGRSISRGRHARTHPQTALLVTSNEHFSTAEESESCFAQPKPHALGRESTVDGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQPGEGLEESGPPQPGGKEDAPAAEGKKKDAGAGTEAESLKGNAEAQPLGPEAKGQPLQAAVEKDSLRAVEVTENPQTAAEMKPLGTTENVLTLQIAGELQPQGTVGKDEQAPLLETISKENESPEILEGSQFVETAEEQQLQATLGKEEQPQLLERIPKENVTPEVLDRSQLVEKPVMNDPFHKTPEGPGNMEQIQPEGIVGSMEHPARNVEAGAYVEMIRNIHTNEEDQRIEGETGEKVETDMENEKVSEGAETKEEETGEVVDLSAAT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30270 MIGA1::COL4A1 ENSG00000180488.17::ENSG00000187498.16 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MIGA1 ENSG00000180488.17 protein_coding + + chr1:77779624-77879540:+ chr1:77807101:+ chr1:78245309-78345225:+ chr1:78272786:+ COL4A1 ENSG00000187498.16 protein_coding - - chr13:110148963-110307157:- chr13:110149428:- chr13:110801310-110959504:- chr13:110801775:- chr1:77808534 chr13:110149965 NA NA chr1:78274219 chr13:110802312 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 26 11 26 11 INCL_NON_REF_SPLICE YES_LDAS 0.4278 GT 1.8323 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30275 LINC03051::LSAMP ENSG00000239268.5::ENSG00000185565.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA LINC03051 ENSG00000239268.5 lncRNA - - chr3:117672154-117997592:- chr3:117997182:- chr3:117391001-117716439:- chr3:117716029:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:116444955:- chr3:115521221-116858236:- chr3:116163802:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 20 10 20 10 ONLY_REF_SPLICE YES_LDAS 0.3469 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30281 AUTS2::TNRC18 ENSG00000158321.19::ENSG00000182095.15 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 1034 FALSE NA FALSE NA AUTS2 ENSG00000158321.19 protein_coding + + chr7:69598296-70793506:+ chr7:69599962:+ chr7:69063282-70258492:+ chr7:69064948:+ TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5394595:- chr7:5346421-5465045:- chr7:5434226:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none BAHCC1-like_Tudor|2159-2186|2^DUF4537|2204-2287|6.8e-05^BAHCC1-like_Tudor|2218-2284|5e-31^Tudor_3|2228-2280|5.8e-08^BAH|2817-2956|4.6e-15 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:64.17Mb] 13 2 13 2 ONLY_REF_SPLICE YES_LDAS 0.1734 GT 1.8892 AG 1.8062 ENST00000342771.10 1-309 ENST00000399537.8 188-8907 chr7|+|[0]69599654-69599962[2]<==>chr7|-|[2]5308106-5308312[0]|[2]5308875-5308949[0]|[2]5309132-5309368[0]|[2]5312503-5313859[2]|[1]5314980-5315148[1]|[0]5315956-5316072[1]|[0]5320318-5320426[0]|[2]5320532-5320607[2]|[1]5321073-5321190[1]|[0]5324214-5324355[0]|[2]5325096-5325248[0]|[2]5332622-5333049[1]|[0]5345562-5345810[1]|[0]5351819-5352094[1]|[0]5356916-5357276[0]|[2]5359398-5359569[2]|[1]5361594-5361722[2]|[1]5361897-5362033[0]|[2]5362650-5362825[1]|[0]5370375-5371364[1]|[0]5374055-5374484[0]|[2]5376034-5376224[1]|[0]5376847-5376993[1]|[0]5377371-5377576[2]|[1]5377922-5378024[1]|[0]5387672-5389336[1]|[0]5390485-5390628[1]|[0]5394440-5394595[1] atggatggcccgacgcggggccatggactccgcaaaaagcggcggtcgcggtcgcagcgagaccgggagaggcgctcccggggcgggctgggggccggcgcggccggcggcggcggggctggccggacccgggcgctctcactcgcctcgtcgtcgggctccgacaaggaagacaatgggaagcccccgtcctccgccccgtcccggcccagacccccgcggaggaagcggagagagtccacctcggcagaagaggacatcattgatggatttgccatgaccagctttgtcacttttgaagcgctggagGCGAGGCCTTCTTGGGCAGCTTTGTGGCCAGCGGGATGGGGCCCTCGGCCTCGTCCCATGGGAGCCCAGTGCCACTGCCCTCTGACCTGTCTTTCCGCTCCCCAACCCCTAGCAACCTGCCCATGGTGCAGCTGTGGGCCGCCCACGCCCATGAAGGCTTCTCCCACCTGCCCAGTGGGCTGTACCCATCCTACCTCCACCTGAACCACCTGGAGCCCCCCAGCAGTGGGAGCCCCCTCCTCAGCCAGCTGGGTCAGCCCAGCATTTTCGATACCCAGAAAGGTCAGGGGCCAGGAGGAGACGGTTTCTACCTGCCCACCGCGGGGGCTCCGGGCTCCCTGCACTCTCACGCGCCCTCGGCCCGGACCCCTGGCGGCGGCCACTCCTCGGGCGCCCCGGCCAAAGGCTCGTCGTCGCGGGACGGTCCAGCCAAGGAGCGGGCGGGCCGCGGCGGGGAGCCGCCTCCGCTTTTCGGCAAGAAGGACCCGCGCGCCCGGGGCGAGGAGGCCTCGGGGCCACGGGGCGTGGTGGACCTGACCCAGGAGGCGCGCGCCGAGGGCCGCCAGGACCGGGGGCCCCCGCGCCTGGCTGAGCGCCTGTCGCCCTTCCTGGCTGAGTCCAAGACCAAGAATGCGGCGCTGCAGCCGTCGGTACTGACCATGTGCAACGGCGGCGCCGGGGACGTGGGGCTGCCCGCGCTGGTGGCCGAAGCGGGGCGCGGGGGTGCCAAGGAGGCTGCCCGGCAGGACGAGGGCGCGCGGCTGCTGCGGCGCACGGAGACCCTGCTCCCTGGGCCGCGCCCCTGCCCCTCACCGCTGCCCCCGCCGCCCGCGCCCCCCAAGGGGCCTCCTGCACCCCCCGCGGCCACCCCCGCCGGCGTCTACACCGTCTTCCGCGAGCAGGGCCGTGAGCACCGCGTGGTGGCGCCCACCTTCGTGCCTTCCGTGGAGGCCTTCGACGAGCGCCCGGGGCCCATCCAGATCGCATCCCAGGCGCGCGATGCCCGGGCCCGCGAGCGCGAGGCTGGCAGGCCAGGGGTCCTGCAGGCGCCCCCCGGCTCCCCGCGGCCTCTGGACCGGCCCGAGGGCCTGCGCGAGAAGAACTCGGTCATCCGCTCGCTCAAGCGGCCGCCCCCCGCGGATGCCCCCACGGTGCGGGCCACACGCGCCTCCCCGGACCCCCGCGCCTACGTGCCTGCCAAGGAGCTGCTCAAGCCCGAGGCGGACCCGAGGCCCTGCGAGCGTGCGCCCCGCGGCCCAGCCGGTCCTGCAGCCCAACAGGCCGCCAAGCTCTTCGGCCTGGAGCCCGGGCGCCCCCCGCCCACCGGCCCTGAGCATAAATGGAAACCCTTCGAGCTGGGCAACTTCGCCGCCACGCAGATGGCCGTGCTGGCCGCGCAGCACCACCACAGCCGCGCCGAAGAGGAGGCCGCCGTGGTCGCTGCCTCCTCCTCCAAGAAGGCCTACCTGGACCCTGGGGCTGTGCTGCCCCGCTCGGCGGCCACCTGCGGCCGGCCGGTCGCTGACATGCACTCTGCGGCCCACGGGTCTGGAGAGGCCTCGGCCATGCAGAGCCTTATAAAGTACAGTGGCAGCTTTGCCCGGGACGCCGTGGCCGTGCGCCCTGGTGGCTGTGGCAAGAAGAGCCCCTTTGGAGGTTTGGGCACCATGAAACCCGAGCCTGCGCCCACCTCTGCGGGTGCCTCCCGAGCCCAGGCCCGTCTCCCACACTCCGGAGGCCCTGCAGCGGGCGGCGGCCGGCAGCTGAAGCGGGACCCCGAGAGGCCCGAGAGCGCCAAAGCTTTCGGGCGCGAGGGCTCTGGTGCCCAGGGTGAGGCAGAAGTGCGACACCCGCCTGTGGGCATTGCAGTGGCTGTGGCCCGGCAGAAGGACAGTGGCGGCAGTGGCCGGCTGGGGCCTGGGCTGGTAGACCAGGAGCGCTCTCTGTCGCTGAGTAACGTCAAAGGGCACGGCCGAGCAGATGAGGACTGTGTGGACGACCGGGCCAGACACCGGGAGGAACGGCTGCTCGGGGCACGGCTGGACCGGGATCAGGAGAAGCTGCTCAGAGAGAGTAAGGAGCTGGCTGACCTGGCCCGCCTGCACCCTACCAGCTGTGCTCCTAACGGCCTGAACCCCAACCTCATGGTGACGGGGGGCCCGGCGCTGGCGGGCTCAGGTCGCTGGTCTGCCGACCCCGCAGCCCATCTGGCCACGCACCCCTGGTTGCCCCGCTCGGGCAACGCATCCATGTGGCTCGCTGGACACCCCTACGGCTTGGGTCCCCCATCTCTGCACCAGGGCATGGCCCCTGCGTTCCCACCTGGCCTGGGGGGCTCCCTCCCGTCAGCCTACCAGTTTGTCAGGGACCCCCAATCGGGCCAGCTGGTGGTCATTCCCAGTGATCACCTTCCTCACTTTGCGGAGCTGATGGAGCGGGCCACCGTACCGCCCCTCTGGCCCGCCCTGTACCCGCCGGGCCGCAGCCCCCTGCACCACGCCCAGCAGCTGCAGCTCTTCTCACAGCAGCACTTCCTGCGGCAGCAGGAGTTCCTGTACCTGCAGCAGCAGGCGGCCCAGGCCTTGGAACTGCAGAGGAGCGCCCAGCTCGTGCAGGAGCGGTTGAAGGCGCAGGAGCACCGGGCGGAGATGGAAGAGAAGGGGAGCAAGCGGGGCCTGGAGGCTGCGGGCAAGGCTGGCCTGGCCACCGCCGGCCCCGGGCTGCTGCCGCGGAAGCCCCCTGGCCTGGCCGCCGGCCCCGCGGGCACCTACGGCAAGGCCGTGAGCCCGCCACCATCACCCCGCGCATCCCCTGTGGCTGCCCTGAAGGCCAAGGTCATCCAGAAGCTGGAGGACGTGTCCAAGCCACCCGCCTACGCCTACCCCGCCACCCCCAGCTCCCACCCCACCAGCCCGCCGCCCGCCTCCCCACCGCCCACCCCGGGTATCACCCGCAAGGAGGAGGCTCCCGAGAATGTGGTCGAGAAGAAAGACTTGGAGTTGGAGAAGGAAGCCCCCAGCCCCTTCCAGGCCCTGTTCTCAGATATCCCGCCCAGGTACCCGTTCCAAGCCCTGCCACCGCACTACGGGAGGCCCTACCCTTTCCTGCTGCAGCCCACGGCCGCCGCCGACGCGGACGGCTTGGCCCCTGATGTGCCGCTCCCGGCTGATGGGCCCGAGCGCCTGGCACTCTCACCCGAAGACAAGCCCATCCGCTTGTCCCCCTCCAAGATCACAGAGCCGCTGCGGGAGGGCCCGGAGGAAGAACCGCTGGCTGAGCGGGAGGTGAAGGCAGAGGTGGAGGACATGGACGAGGGCCCCACAGAGCTGCCGCCTCTGGAGTCGCCGCTGCCACTGCCCGCCGCGGAAGCCATGGCTACCCCCAGCCCTGCAGGGGGTTGTGGAGGTGGCCTGTTGGAGGCCCAGGCGCTGAGTGCCACCGGGCAGAGCTGCGCAGAGCCCTCTGAGTGTCCAGACTTTGTGGAGGGGCCTGAACCACGGGTGGATTCCCCGGGCCGGACAGAACCCTGCACCGCCGCCCTGGACCTGGGGGTGCAGCTGACACCCGAGACACTGGTGGAGGCCAAGGAGGAGCCGGTGGAGGTGCCTGTGGCGGTGCCCGTGGTGGAGGCAGTGCCCGAGGAAGGCCTGGCGCAGGTGGCACCGAGCGAGTCCCAGCCCACCCTAGAAATGTCAGACTGTGACGTGCCCGCCGGGGAGGGACAGTGCCCGAGCCTGGAGCCCCAAGAGGCCGTGCCTGTACTCGGCAGCACCTGCTTCCTGGAAGAGGCAAGCTCTGACCAGTTCCTGCCCAGTCTGGAGGACCCACTGGCTGGCATGAACGCCCTGGCGGCAGCTGCGGAGCTGCCCCAGGCCAGGCCTCTGCCCTCCCCGGGTGCTGCTGGAGCCCAGGCCTTGGAGAAGCTGGAAGCAGCCGAGAGCCTTGTCTTGGAGCAGAGCTTCCTGCATGGCATCACCCTGCTAAGTGAGATCGCAGAGCTGGAGCTGGAGAGGAGGAGCCAAGAGATGGGAGGTGCGGAGCGGGCCCTGGTGGCGCGGCCCTCCCTGGAGAGTCTGCTGGCAGCTGGCAGCCACATGCTGAGGGAGGTGCTGGATGGGCCCGTGGTGGACCCACTCAAGAACCTGCGGCTCCCGCGGGAGCTGAAGCCCAACAAGAAGTACAGCTGGATGCGCAAGAAGGAGGAGCGGATGTATGCCATGAAGTCCTCCCTGGAGGACATGGACGCCCTGGAGCTGGACTTCCGGATGCGGCTGGCCGAGGTGCAGCGCCAGTACAAGGAGAAGCAGCGTGAGCTGGTGAAGCTGCAGCGCCGCCGGGACTCCGAGGACAGGCGCGAGGAACCCCATAGAAGCTTGGCACGCAGAGGCCCTGGCAGGCCGCGGAAACGGACCCACGCCCCGAGCGCCCTGTCGCCCCCCCGCAAGAGAGGGAAGAGCGGCCACAGTAGCGGAAAGCTGAGCAGCAAGTCTCTGCTGACATCAGATGATTATGAGCTGGGAGCAGGGATAAGAAAGAGACACAAGGGGTCTGAGGAGGAACATGATGCCCTCATCGGAATGGGGAAAGCCAGGGGGAGGAACCAGACTTGGGATGAACATGAGGCCTCGTCGGACTTCATCAGTCAGCTAAAGATTAAGAAGAAGAAGATGGCCAGCGACCAGGAGCAGTTGGCAAGCAAGCTCGACAAGGCCCTCTCCCTCACCAAGCAGGACAAGTTGAAGTCGCCCTTCAAGTTTTCGGACAGTGCTGGGGGGAAATCGAAAACTAGCGGGGGCTGCGGCAGGTACTTGACTCCTTACGACAGCCTGCTGGGGAAGAACAGGAAGGCGCTGGCCAAGGGCCTCGGCCTGTCTCTGAAATCCTCCAGAGAAGGTAAACACAAAAGGGCAGCCAAAACCAGGAAGATGGAGGTGGGGTTCAAGGCCAGAGGCCAGCCCAAGTCGGCCCATTCCCCGTTTGCCTCGGAAGTGAGCAGCTACTCTTACAATACGGACTCAGAGGAAGACGAAGAATTCCTGAAGGACGAGTGGCCCGCCCAAGGCCCCTCCAGCTCCAAACTGACGCCTTCCCTCCTGTGTAGCATGGTGGCAAAGAACAGCAAGGCAGCTGGTGGCCCCAAGCTGACCAAGAGGGGCCTGGCGGCCCCCCGGACTCTGAAACCCAAGCCGGCCACCAGCAGGAAGCAGCCGTTTTGTCTGCTGCTTCGAGAGGCCGAGGCGCGTTCCTCCTTCAGCGACTCTTCGGAGGAATCGTTTGACCAAGATGAGAGCTCGGAGGAGGAGGACGAGGAGGAGGAGCTCGAGGAGGAGGACGAGGCCAGCGGTGGTGGCTACAGGCTGGGTGCCCGGGAGCGGGCCCTGTCACCGGGCCTGGAGGAGAGTGGGCTGGGCCTGCTGGCACGCTTCGCCGCCAGCGCCCTCCCCAGCCCCACGGTGGGTCCATCCCTGTCTGTGGTACAGCTGGAGGCCAAGCAGAAGGCCCGGAAGAAAGAGGAGCGGCAGAGCCTGCTGGGCACAGAGTTCGAGTACACCGACTCAGAGAGCGAGGTCAAGGTGCGCAAGCGGTCGCCTGCGGGGCTGCTGCGGCCCAAGAAGGGGCTGGGGGAGCCGGGACCCTCCCTGGCCGCACCCACGCCTGGCGCCCGCGGTCCCGACCCCAGCAGCCCAGACAAGGCCAAGCTGGCGGTGGAGAAGGGGCGCAAGGCCCGGAAGCTGCGGGGCCCCAAGGAGCCTGGCTTCGAGGCGGGGCCCGAGGCCAGCGACGACGACCTGTGGACGCGGCGCCGCAGCGAGCGCATCTTCCTGCACGACGCCTCGGCTGCTGCACCTGCGCCCGTCAGCACCGCGCCCGCCACCAAGACCAGCCGCTGCGCCAAGGGCGGCCCCCTGAGCCCGCGCAAGGACGCCGGGCGTGCAAAGGACAGGAAGGACCCCAGGAAGAAGAAGAAAGGGAAAGAGGCTGGGCCAGGAGCTGGGCTGCCGCCGCCCCGAGCTCCTGCCTTGCCCTCTGAGGCCAGGGCTCCTCACGCCAGCTCCCTGACCGCTGCCAAAAGGAGCAAAGCCAAGGCCAAAGGGAAGGAGGTGAAGAAGGAGAACCGCGGCAAGGGGGGTGCCGTGAGCAAGCTGATGGAGAGCATGGCAGCCGAGGAGGACTTTGAACCCAACCAAGACTCGAGCTTCTCTGAGGACGAGCACCTGCCGCGTGGCGGGGCTGTGGAGCGGCCGCTGACCCCGGCCCCTCGCTCCTGCATCATCGACAAGGATGAGCTGAAGGACGGCCTGCGTGTGCTCATCCCCATGGATGACAAGCTGCTGTACGCCGGGCACGTGCAGACCGTGCACTCGCCAGACATATACCGCGTGGTGGTGGAGGGTGAGCGGGGCAACCGGCCCCACATCTACTGTCTGGAGCAGTTGCTGCAGGAGGCGATCATCGATGTGAGGCCAGCCTCCACTCGCTTCTTGCCACAAGGGACCAGGATTGCAGCCTACTGGAGCCAGCAGTACCGCTGTCTCTACCCAGGCACTGTGGTCCGAGGGTTACTGGACCTGGAGGACGATGGGGACTTGATCACCGTGGAGTTTGACGACGGAGACACGGGCAGGATCCCCCTCTCACATATCCGCCTCCTGCCCCCTGACTATAAGATACAGTGTGCTGAGCCGTCCCCGGCCCTTCTGGTGCCAAGTGCCAAGCGCCGCAGCCGGAAGACCAGCAAAGACACTGGGGAGGGCAAAGATGGTGGCACGGCTGGGTCGGAGGAGCCAGGAGCCAAGGCCCGTGGGCGTGGGCGGAAACCCAGCGCCAAGGCCAAGGGTGGTAGAGCCGCTACCCTGGAGGAGGGGAACCCAACAGACGAGGTCCCCAGTACCCCCTTAGCCCTGGAGCCGAGCAGCACCCCAGGTTCCAAGAAGAGCCCCCCAGAGCCTGTGGACAAGCGAGCCAAGGCCCCCAAGGCGCGCCCGGCACCGCCGCAGCCCAGTCCCGCACCACCCGCCTTCACCAGCTGCCCAGCACCCGAGCCATTTGCAGAGCTGCCAGCTCCTGCCACCTCCCTGGCCCCAGCACCCCTCATCACCATGCCTGCCACACGCCCCAAGCCCAAGAAGGCGCGGGCAGCCGAGGAGTCGGGTGCCAAGGGCCCTCGGAGGCCGGGGGAGGAGGCCGAGCTGCTTGTCAAACTGGACCACGAGGGTGTCACGTCACCCAAAAGCAAGAAGGCTAAAGAGGCCCTGCTGCTCCGGGAGGATCCGGGGGCGGGGGGCTGGCAGGAGCCCAAGAGCCTCCTGAGCCTGGGCAGCTATCCCCCCGCGGCCGGCAGCAGCGAGCCCAAGGCACCCTGGCCCAAGGCCACCGACGGGGACCTCGCCCAGGAGCCCGGGCCGGGGCTCACGTTCGAGGACTCTGGGAACCCCAAGAGCCCAGACAAGGCCCAGGCTGAGCAGGACGGGGCCGAAGAGTCCGAGAGCAGCAGCAGCAGCAGTAGTGGCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCTCGGAGACAGAAGGGGAGGAGGAAGGCGACAAGAACGGGGACGGGGGCTGCGGCACCGGGGGCCGTAACTGCAGCGCTGCCAGCTCCAGGGCGGCCTCACCGGCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCGTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCGTCCTCATCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCTTCCTCCACCACAGACGAGGACTCTTCCTGCAGCTCGGACGATGAGGCAGCCCCCGCCCCCACGGCTGGCCCTTCCGCGCAGGCGGCGCTCCCCACCAAGGCCACCAAGCAGGCCGGCAAGGCGCGGCCCTCGGCCCACTCCCCAGGCAAGAAGACGCCCGCGCCCCAGCCCCAGGCGCCTCCTCCGCAGCCCACACAGCCTCTGCAGCCCAAGGCTCAGGCCGGGGCCAAGAGCCGACCCAAGAAGAGAGAGGGCGTCCACCTCCCCACCACCAAGGAGCTGGCCAAGCGGCAGCGCCTGCCGTCCGTGGAGAACCGGCCCAAGATCGCCGCCTTCCTGCCAGCCCGGCAGCTCTGGAAGTGGTTCGGCAAGCCCACCCAGCGGCGTGGCATGAAGGGCAAGGCCCGCAAGCTCTTCTACAAGGCCATCGTGCGCGGCAAGGAGATGATCCGTATCGGGGACTGTGCCGTGTTCCTCTCTGCCGGCCGCCCCAACCTGCCCTACATCGGCCGCATCCAGAGCATGTGGGAGTCGTGGGGCAACAACATGGTGGTCCGCGTCAAGTGGTTCTACCACCCCGAGGAGACCAGCCCGGGCAAGCAGTTCCACCAGGGCCAGCACTGGGACCAGAAGTCCAGCCGCAGCCTCCCGGCGGCCCTGCGGGTCTCCAGCCAGAGGAAGGACTTCATGGAGCGCGCGCTATACCAGTCCTCGCATGTGGACGAAAATGACGTGCAGACGGTGTCGCACAAGTGCCTGGTGGTGGGCCTGGAGCAGTATGAGCAGATGCTGAAGACCAAGAAGTACCAGGACAGCGAGGGCCTGTACTACCTCGCGGGCACCTACGAGCCCACCACGGGCATGATCTTCTCCACGGACGGCGTGCCCGTGCTCTGCTGA MDGPTRGHGLRKKRRSRSQRDRERRSRGGLGAGAAGGGGAGRTRALSLASSSGSDKEDNGKPPSSAPSRPRPPRRKRRESTSAEEDIIDGFAMTSFVTFEALEARPSWAALWPAGWGPRPRPMGAQCHCPLTCLSAPQPLATCPWCSCGPPTPMKASPTCPVGCTHPTST*TTWSPPAVGAPSSASWVSPAFSIPRKVRGQEETVSTCPPRGLRAPCTLTRPRPGPLAAATPRAPRPKARRRGTVQPRSGRAAAGSRLRFSARRTRAPGARRPRGHGAWWT*PRRRAPRAARTGGPRAWLSACRPSWLSPRPRMRRCSRRY*PCATAAPGTWGCPRWWPKRGAGVPRRLPGRTRARGCCGARRPCSLGRAPAPHRCPRRPRPPRGLLHPPRPPPPASTPSSASRAVSTAWWRPPSCLPWRPSTSARGPSRSHPRRAMPGPASARLAGQGSCRRPPAPRGLWTGPRACARRTRSSARSSGRPPRMPPRCGPHAPPRTPAPTCLPRSCSSPRRTRGPASVRPAAQPVLQPNRPPSSSAWSPGAPRPPALSINGNPSSWATSPPRRWPCWPRSTTTAAPKRRPPWSLPPPPRRPTWTLGLCCPARRPPAAGRSLTCTLRPTGLERPRPCRAL*STVAALPGTPWPCALVAVARRAPLEVWAP*NPSLRPPLRVPPEPRPVSHTPEALQRAAAGS*SGTPRGPRAPKLSGARALVPRVRQKCDTRLWALQWLWPGRRTVAAVAGWGLGW*TRSALCR*VTSKGTAEQMRTVWTTGPDTGRNGCSGHGWTGIRRSCSERVRSWLTWPACTLPAVLLTA*TPTSW*RGARRWRAQVAGLPTPQPIWPRTPGCPARATHPCGSLDTPTAWVPHLCTRAWPLRSHLAWGAPSRQPTSLSGTPNRASWWSFPVITFLTLRS*WSGPPYRPSGPPCTRRAAAPCTTPSSCSSSHSSTSCGSRSSCTCSSRRPRPWNCRGAPSSCRSG*RRRSTGRRWKRRGASGAWRLRARLAWPPPAPGCCRGSPLAWPPAPRAPTARP*ARHHHPAHPLWLP*RPRSSRSWRTCPSHPPTPTPPPPAPTPPARRPPPHRPPRVSPARRRLPRMWSRRKTWSWRRKPPAPSRPCSQISRPGTRSKPCHRTTGGPTLSCCSPRPPPTRTAWPLMCRSRLMGPSAWHSHPKTSPSACPPPRSQSRCGRARRKNRWLSGR*RQRWRTWTRAPQSCRLWSRRCHCPPRKPWLPPALQGVVEVACWRPRR*VPPGRAAQSPLSVQTLWRGLNHGWIPRAGQNPAPPPWTWGCS*HPRHWWRPRRSRWRCLWRCPWWRQCPRKAWRRWHRASPSPP*KCQTVTCPPGRDSARAWSPKRPCLYSAAPASWKRQALTSSCPVWRTHWLA*TPWRQLRSCPRPGLCPPRVLLEPRPWRSWKQPRALSWSRASCMASPC*VRSQSWSWRGGAKRWEVRSGPWWRGPPWRVCWQLAATC*GRCWMGPWWTHSRTCGSRGS*SPTRSTAGCARRRSGCMP*SPPWRTWTPWSWTSGCGWPRCSASTRRSSVSW*SCSAAGTPRTGARNPIEAWHAEALAGRGNGPTPRAPCRPPAREGRAATVAES*AASLC*HQMIMSWEQG*ERDTRGLRRNMMPSSEWGKPGGGTRLGMNMRPRRTSSVS*RLRRRRWPATRSSWQASSTRPSPSPSRTS*SRPSSFRTVLGGNRKLAGAAAGT*LLTTACWGRTGRRWPRASACL*NPPEKVNTKGQPKPGRWRWGSRPEASPSRPIPRLPRK*AATLTIRTQRKTKNS*RTSGPPKAPPAPN*RLPSCVAWWQRTARQLVAPS*PRGAWRPPGL*NPSRPPAGSSRFVCCFERPRRVPPSATLRRNRLTKMRARRRRTRRRSSRRRTRPAVVATGWVPGSGPCHRAWRRVGWACWHASPPAPSPAPRWVHPCLWYSWRPSRRPGRKRSGRACWAQSSSTPTQRARSRCASGRLRGCCGPRRGWGSRDPPWPHPRLAPAVPTPAAQTRPSWRWRRGARPGSCGAPRSLASRRGPRPATTTCGRGAAASASSCTTPRLLHLRPSAPRPPPRPAAAPRAAP*ARARTPGVQRTGRTPGRRRKGKRLGQELGCRRPELLPCPLRPGLLTPAP*PLPKGAKPRPKGRR*RRRTAARGVP*AS*WRAWQPRRTLNPTKTRASLRTSTCRVAGLWSGR*PRPLAPASSTRMS*RTACVCSSPWMTSCCTPGTCRPCTRQTYTAWWWRVSGATGPTSTVWSSCCRRRSSM*GQPPLASCHKGPGLQPTGASSTAVSTQALWSEGYWTWRTMGT*SPWSLTTETRAGSPSHISASCPLTIRYSVLSRPRPFWCQVPSAAAGRPAKTLGRAKMVARLGRRSQEPRPVGVGGNPAPRPRVVEPLPWRRGTQQTRSPVPP*PWSRAAPQVPRRAPQSLWTSEPRPPRRARHRRSPVPHHPPSPAAQHPSHLQSCQLLPPPWPQHPSSPCLPHAPSPRRRGQPRSRVPRALGGRGRRPSCLSNWTTRVSRHPKARRLKRPCCSGRIRGRGAGRSPRAS*AWAAIPPRPAAASPRHPGPRPPTGTSPRSPGRGSRSRTLGTPRAQTRPRLSRTGPKSPRAAAAAVVAAVAAAAAAAAAARRQKGRRKATRTGTGAAAPGAVTAALPAPGRPHRPPPPPPHPPPPPPPPPHPPLPPPPLPPPPLPLRLPPLPPPPLPRPHPPPPPPLPPLLPPPQTRTLPAARTMRQPPPPRLALPRRRRSPPRPPSRPARRGPRPTPQARRRPRPSPRRLLRSPHSLCSPRLRPGPRADPRRERASTSPPPRSWPSGSACRPWRTGPRSPPSCQPGSSGSGSASPPSGVA*RARPASSSTRPSCAARR*SVSGTVPCSSLPAAPTCPTSAASRACGSRGATTWWSASSGSTTPRRPARASSSTRASTGTRSPAAASRRPCGSPARGRTSWSARYTSPRMWTKMTCRRCRTSAWWWAWSSMSRC*RPRSTRTARACTTSRAPTSPPRA*SSPRTACPCSA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation 30285 ENSG00000286385::COPS3 ENSG00000286385.1::ENSG00000141030.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1040 FALSE NA FALSE NA ENSG00000286385 ENSG00000286385.1 lncRNA - - chr13:82778208-83102335:- chr13:83063214:- chr13:83352343-83676470:- chr13:83637349:- COPS3 ENSG00000141030.13 protein_coding - - chr17:17246616-17281273:- chr17:17262106:- chr17:17149930-17184587:- chr17:17165420:- chr13:82795998,chr13:82795993,chr13:82796043,chr13:82796024,chr13:82796023,chr13:82796011,chr13:82796000 chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486,chr17:17264486 NA NA chr13:83370133,chr13:83370128,chr13:83370178,chr13:83370159,chr13:83370158,chr13:83370146,chr13:83370135 chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800,chr17:17167800 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 10 11 10 ONLY_REF_SPLICE YES_LDAS 0.2428 GT 1.7465 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30286 SYTL3::TULP4 ENSG00000164674.17::ENSG00000130338.13 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1036 FALSE NA FALSE NA SYTL3 ENSG00000164674.17 protein_coding + + chr6:158650014-158764876:+ chr6:158651842:+ chr6:159071046-159185908:+ chr6:159072874:+ TULP4 ENSG00000130338.13 protein_coding + + chr6:158232236-158511828:+ chr6:158413065:+ chr6:158653268-158932860:+ chr6:158834097:+ chr6:158656216,chr6:158656212 chr6:158337296,chr6:158337289 NA NA chr6:159077248,chr6:159077244 chr6:158758328,chr6:158758321 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.14Mb] 9 0 9 0 ONLY_REF_SPLICE YES_LDAS 0.1041 GT 1.6895 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ovarian OVARY no_match 158673455 FALSE 158511391 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30290 AGBL4::LINC02808 ENSG00000186094.18::ENSG00000284696.2 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AGBL4 ENSG00000186094.18 protein_coding - - chr1:48532854-50023954:- chr1:50023763:- chr1:48998526-50489626:- chr1:50489435:- LINC02808 ENSG00000284696.2 lncRNA - - chr1:50229662-50321192:- chr1:50266589:- chr1:50695334-50786864:- chr1:50732261:- chr1:49880226,chr1:49880230 chr1:50268552,chr1:50268553 NA NA chr1:50345898,chr1:50345902 chr1:50734224,chr1:50734225 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 3 8 2.91 ONLY_REF_SPLICE YES_LDAS 0.1261 GT 1.6895 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30293 JAKMIP3::LRRC27 ENSG00000188385.13::ENSG00000148814.18 SHP77 SRR8615674 SRR8670685 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1041 FALSE NA FALSE NA JAKMIP3 ENSG00000188385.13 protein_coding + + chr10:132036336-132184858:+ chr10:132104943:+ chr10:133849840-133998362:+ chr10:133918447:+ LRRC27 ENSG00000148814.18 protein_coding + + chr10:132332154-132381508:+ chr10:132344498:+ chr10:134145658-134195012:+ chr10:134158002:+ chr10:132115768 chr10:132342324 NA NA chr10:133929272 chr10:134155828 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pox_A_type_inc|38-52|0.023^JAKMIP_CC3|47-125|2 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.15Mb] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1272 GT 1.4295 AG 1.8256 ENST00000666974.1 1-135 ENST00000368614.8 401-1593 chr10|+|[0]132104809-132104943[2]<==>chr10|+|[1]132344498-132344650[0]|[1]132347984-132348356[1]|[2]132351607-132351753[1]|[2]132355790-132355886[2]|[0]132361457-132361575[1]|[2]132365424-132365550[2]|[0]132375066-132375242[2] atgtccaagaggggcatgagcagccgggccaagggggacaaggcagaggccctcgcggcgctgcaggcggccaacgaggatcttcgagccaagctcacagacatccagatcgagctgcagcaggagaagagcaagGGAGCGTAACCACGCTGAAAGCACTGAACCTAAGACACTGCCCTCTGGAATTCCCTCCTCAGCTCGTTGTGCAGAAGGGATTGGTGGCTATCCAGCGCTTCCTGCGGATGTGGGCAGTAGAACACTCTCTCCCCAGAAATCCAACTTCTCAAGAGGCTCCACCGGTTAGAGAGATGACCCTCCGTGACCTCCCGAGCCCAGGACTGGAGTTGTCTGGAGACCACGCGTCTAACCAAGGAGCTGTGAACGCTCAGGACCCAGAGGGGGCTGTGATGAAAGAGAAGGCCAGCTTTCTCCCACCTGTGGAAAAGCCAGACCTGAGTGAACTCAGGAAGTCTGCGGACTCCTCAGAGAACTGGCCCAGCGAGGAGGAGATCAGGCGCTTTTGGAAGCTGAGGCAGGAGATTGTTGAGCACGTGAAGGCAGACGTTCTGGGAGATCAGCTCTTGACGAGGGAATTACCTCCAAATCTCAAGGCGGCCTTGAACATTGAGAAAGAACTACCAAAGCCAAGACACGTTTTCAGAAGGAAGACAGCCTCCTCCAGGAGCATCTTACCCGACCTCTTGTCACCGTACCAAATGGCGATCCGAGCAAAAAGACTGGAAGAGAGCCGAGCGGCGGCGCTCCGAGAGCTCCAGGAGAAGCAGGCTCTGATGGAGCAGCAGAGACGAGAGAAAAGGGCACTGCAGGAGTGGAGAGAGCGAGCCCAGAGGATGAGGAAGAGGAAGGAAGAGCTCAGCAAACTCCTGCCTCCGCGGAGGAGCATGGTGGCATCAAAGATTCCCTCTGCCACAGATCTGATAGATAACAGGAAAGTACCACTGAATCCGCCTGGAAAAATGAAACCAAGCAAAGAGAAATCGCCACAAGCAAGTAAAGAAATGAGTGCCCTGCAGGAGAGAAATTTAGAAGAGAAGATAAAACAGCACGTCCTCCAAATGCGTGAGCAAAGAAGATTCCATGGCCAGGCCCCACTGGAGGAGATGAGGAAGGCTGCCGAGGATCTGGAAATTGCCACAGAGCTACAGGATGAAGTATTGAAGCTAAAATTGGGATTAACCTTGAACAAAGATCGTCGACGGGCGGCCCTCACTGGAAACCTTTCGCTTGGCCTGCCGGCAGCACAGCCTCAAAATACATTTTTTAACACAAAATATGGAGAATCAGGAAATGTTCGCAGATACCAGTGA MSKRGMSSRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKGA*PR*KH*T*DTALWNSLLSSLCRRDWWLSSASCGCGQ*NTLSPEIQLLKRLHRLER*PSVTSRAQDWSCLETTRLTKEL*TLRTQRGL**KRRPAFSHLWKSQT*VNSGSLRTPQRTGPARRRSGAFGS*GRRLLST*RQTFWEISS*RGNYLQISRRP*TLRKNYQSQDTFSEGRQPPPGASYPTSCHRTKWRSEQKDWKRAERRRSESSRRSRL*WSSRDERKGHCRSGESEPRG*GRGRKSSANSCLRGGAWWHQRFPLPQI**ITGKYH*IRLEK*NQAKRNRHKQVKK*VPCRREI*KRR*NSTSSKCVSKEDSMARPHWRR*GRLPRIWKLPQSYRMKY*S*NWD*P*TKIVDGRPSLETFRLACRQHSLKIHFLTQNMENQEMFADTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30296 LRBA::SH3D19 ENSG00000198589.15::ENSG00000109686.20 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1042 FALSE NA FALSE NA LRBA ENSG00000198589.15 protein_coding - - chr4:150264435-151015727:- chr4:150905838:- chr4:151185587-151936879:- chr4:151826990:- SH3D19 ENSG00000109686.20 protein_coding - - chr4:151102751-151325605:- chr4:151122207:- chr4:152023903-152246757:- chr4:152043359:- chr4:150901701 chr4:151124066 NA NA chr4:151822853 chr4:152045218 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Neurobeachin|62-197|3.2e-12^Laminin_G_3|215-376|4.7e-15^PH_BEACH|292-311|5.5^DUF4704|442-921|4.4e-177^PH_BEACH|913-934|0.32 none ["LRBA:Oncogene"];["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr4:0.09Mb];LOCAL_REARRANGEMENT:-:[87024] 41 22 41 22 ONLY_REF_SPLICE YES_LDAS 0.7797 GT 1.6895 AG 1.8062 ENST00000510413.5 1-1755 ENST00000409598.8 2188-2304 chr4|-|[2]150905838-150905990[0]|[2]150906297-150906405[2]|[1]150908334-150908467[0]|[2]150908660-150908857[0]|[2]150914195-150914341[0]|[2]150915608-150915727[0]|[2]150916401-150916527[2]|[1]150916617-150916738[0]|[2]150921198-150921293[0]|[2]150928516-150928616[1]|[0]150928834-150929065[0]|[2]151014427-151014642[0]<==>chr4|-|[2]151122091-151122207[0] atggctagcgaagacaatcgtgtcccttccccgccaccaacaggtgatgacgggggaggtggagggagagaagaaacccctactgaagggggtgcattgtctctgaaaccagggctccccatcaggggcatcagaatgaaatttgccgtgttgaccggtttggttgaagttggagaagtatccaatagggatattgtagaaactgtctttaacctgttggtaggaggacagtttgatctggaaatgaatttcattatccaagaaggtgagagtattaactgcatggtggacctactggaaaaatgtgacattacgtgccaagcagaagtctggagcatgtttacagccattctgaagaaaagcatacggaatcttcaagtctgcactgaagtaggccttgttgaaaaagtgcttgggaaaattgaaaaagttgacaatatgatagcagatcttttggttgacatgttgggagtgctggctagctataatttgacagttcgcgagctaaagcttttcttcagtaaacttcaaggagataaaggacgatggcctccacatgctgggaagttgctgtctgtgttaaagcatatgcctcagaagtatggtcctgatgccttttttaactttccaggaaagagtgctgcagctattgcattacctcctatagccaaatggccataccagaatggttttacatttcatacatggcttagaatggatcctgtaaataacatcaatgtagataaggataaaccatatttgtattgtttcagaaccagcaaaggtcttggctattctgctcattttgttggaggctgtttgattgtaacatcaataaagtcaaaaggaaaaggctttcaacactgtgtgaaatttgatttcaagccacaaaagtggtatatggttaccatagtacacatctataaccgatggaagaatagtgaacttcgatgttatgtgaatggtgagctggcttcctatggagagataacatggtttgtcaacactagcgatacctttgacaaatgtttcctgggctcatcagaaacagcagatgctaatagagtattctgtggtcagatgactgcagtttaccttttcagtgaagctctaaatgcagctcagatatttgctatttatcagttgggcctgggatacaagggtacatttaaattcaaagcagaaagcgaccttttccttgctgagcatcacaaacttttattgtacgatgggaaactctctagtgccattgcattcacgtacaatccacgggctacagatgcccagctttgtcttgaatcatctcctaaggacaacccttcaatttttgttcattcaccacatgcactcatgctccaggatgtaaaggcagttttaacacattccatccaaagtgcaatgcattcaattggaggagtacaagtactatttccactttttgcacagttggattacaggcaatatttgtctgatgagattgatttgactatatgttcaaccttgctggcctttatcatggaattgttgaagaactcaattgctatgcaggaacagatgcttgcctgtaagggcttcttggtaataggatatagccttgaaaagtcttccaaatctcatgttagcagagcagtacttgaactttgccttgcattttcaaaatatctgagtaatctgcagaatgggatgcccctgctcaagcaattgtgtgatcacgttcttcttaatcctgccatatggattcataccccagccaagGCTGGAGATATAATAACAGAGCTGGAATCTGTAGATGATGACTGGATGAGTGGAGAACTTATGGGAAAATCTGGAATATTTCCCAAAAACTACATACAGTTTCTACAGATCAGCTAG MASEDNRVPSPPPTGDDGGGGGREETPTEGGALSLKPGLPIRGIRMKFAVLTGLVEVGEVSNRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKHMPQKYGPDAFFNFPGKSAAAIALPPIAKWPYQNGFTFHTWLRMDPVNNINVDKDKPYLYCFRTSKGLGYSAHFVGGCLIVTSIKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSELRCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMTAVYLFSEALNAAQIFAIYQLGLGYKGTFKFKAESDLFLAEHHKLLLYDGKLSSAIAFTYNPRATDAQLCLESSPKDNPSIFVHSPHALMLQDVKAVLTHSIQSAMHSIGGVQVLFPLFAQLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAIWIHTPAKAGDIITELESVDDDWMSGELMGKSGIFPKNYIQFLQIS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Acute Myeloid Leukemia,Head and Neck squamous cell carcinoma,Colon adenocarcinoma,Bladder Urothelial Carcinoma,Bladder Urothelial Carcinoma LUNG,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HEAD_AND_NECK,COLON,BLADDER,BLADDER inexact 151935579,151682935,151935579,151682935,151656410,151842350 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 152060999,152070713,152070713,152070713,152147238,152096826 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE YES,YES,YES,YES,YES,YES In-frame,Out-of-frame,In-frame,Out-of-frame,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30297 CISD3::PCGF2 ENSG00000277972.2::ENSG00000277258.5 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA CISD3 ENSG00000277972.2 protein_coding + + chr17:38730341-38735605:+ chr17:38733535:+ chr17:36886594-36891858:+ chr17:36889788:+ PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38739682:- chr17:36890151-36906070:- chr17:36895935:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];NEIGHBORS_OVERLAP:+:-:[1147] 35 16 35 15.62 INCL_NON_REF_SPLICE YES_LDAS 0.6265 GT 1.5628 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30298 GPR39::ENSG00000290616 ENSG00000183840.8::ENSG00000290616.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 1043 TRUE 1853 TRUE 723 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132416951:+ chr2:133174378-133404155:+ chr2:133174524:+ ENSG00000290616 ENSG00000290616.1 lncRNA + + chr2:131733656-131751669:+ chr2:131750633:+ chr2:132491229-132509242:+ chr2:132508206:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 33 5 33 2.95 INCL_NON_REF_SPLICE YES_LDAS 0.4449 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30300 FOXP1::LINC00877 ENSG00000114861.24::ENSG00000241163.10 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1044 FALSE NA FALSE NA FOXP1 ENSG00000114861.24 protein_coding - - chr3:70954693-71583978:- chr3:71299820:- chr3:71003844-71633129:- chr3:71348971:- LINC00877 ENSG00000241163.10 lncRNA - - chr3:71943592-72279503:- chr3:72100010:- chr3:71992743-72328654:- chr3:72149161:- chr3:71216933,chr3:71216936 chr3:72220959,chr3:72220959 NA NA chr3:71266084,chr3:71266087 chr3:72270110,chr3:72270110 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FOXP1:ArcherDX_panel","FOXP1:FoundationOne_panel","FOXP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.45Mb] 23 6 23 6 ONLY_REF_SPLICE YES_LDAS 0.359 GT 1.371 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE TRUE hsa-mir-1284 chr3:71541970-71542089:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE forkhead box P1 1 ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30303 GPR39::ENSG00000290616 ENSG00000183840.8::ENSG00000290616.1 SKCO1 SRR8615680 SRR8670686 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 1853 TRUE 723 GPR39 ENSG00000183840.8 protein_coding + + chr2:132416805-132646582:+ chr2:132417898:+ chr2:133174378-133404155:+ chr2:133175471:+ ENSG00000290616 ENSG00000290616.1 lncRNA + + chr2:131733656-131751669:+ chr2:131750633:+ chr2:132491229-132509242:+ chr2:132508206:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 13 11 9.5 ONLY_REF_SPLICE YES_LDAS 0.2537 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30307 ACACA::NPLOC4 ENSG00000278540.5::ENSG00000182446.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE TRUE 1046 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37330173:- chr17:35441927-35766927:- chr17:35687113:- NPLOC4 ENSG00000182446.15 protein_coding - - chr17:81556887-81648465:- chr17:81572088:- chr17:79523913-79615495:- chr17:79539114:- chr17:37291268,chr17:37291270 chr17:81575336,chr17:81575335 NA NA chr17:35648190,chr17:35648192 chr17:79542362,chr17:79542361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CtsR_C|18-29|0.44^CtsR_C|59-97|8.1e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:44.15Mb] 65 29 65 29 ONLY_REF_SPLICE YES_LDAS 1.2052 GT 1.9899 AG 1.9329 ENST00000617548.1 1-338 ENST00000374747.9 1282-1854 chr17|-|[1]37330173-37330425[1]|[0]37339804-37339850[2]|[1]37406262-37406299[0]<==>chr17|-|[2]81565320-81565607[0]|[2]81567417-81567533[0]|[2]81569016-81569111[0]|[2]81572017-81572088[0] atgtggtggtctactctgatgtcaatcttgagggctaggtctttttggaagtggatatctactcagacagtaagaattataagagctgtaagagctcattttggaggaataatggatgaaccatctcccttggcccaacctctggagctgaaccagcactctcgattcataataggttctgtgtctgaagataactcagaggatgagatcagcaacctggtgaagttggacctactggaggagaaggagggctccttgtcacctgcttctgttggctcagatacactctctgatttggggatctctagcctacaggatggcttggccttgcacataagGACGTAGACAAGTTTGGCAACGAGATCACCCAGCTGGCCCGGCCCCTGCCTGTGGAGTATCTCATCATAGACATCACAACAACTTTCCCCAAGGATCCAGTTTACACTTTTTCTATTTCGCAAAATCCATTTCCTATTGAAAACCGGGATGTATTGGGTGAGACACAGGACTTCCATAGCTTGGCCACCTATTTGTCTCAGAATACCTCATCTGTGTTCTTGGATACCATCTCAGATTTCCACCTCTTGCTGTTCCTGGTCACCAATGAAGTTATGCCTCTGCAGGACAGCATCAGCTTGCTGCTGGAGGCCGTGCGGACCAGAAATGAGGAGCTCGCCCAGACATGGAAGAGGTCTGAGCAGTGGGCCACCATCGAGCAGCTGTGCAGTGAGTACCCCCACCCCCTGCCCCGGCACCCCGTGGCTGGGGCCGGAGAGCAGCCCACTCTGCACAGCTCCCCACTGCCGGTGGTGCCCTGGATTCCGCACCCAGCTGCATCCTGGCAGGTGCCATCGGCAATGCAACGAGTAGAGACTCGGCCTCCCTGCCAGGCACGTGGCAGGCTCCGGTGA MWWSTLMSILRARSFWKWISTQTVRIIRAVRAHFGGIMDEPSPLAQPLELNQHSRFIIGSVSEDNSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISSLQDGLALHIRT*TSLATRSPSWPGPCLWSISS*TSQQLSPRIQFTLFLFRKIHFLLKTGMYWVRHRTSIAWPPICLRIPHLCSWIPSQISTSCCSWSPMKLCLCRTASACCWRPCGPEMRSSPRHGRGLSSGPPSSSCAVSTPTPCPGTPWLGPESSPLCTAPHCRWCPGFRTQLHPGRCHRQCNE*RLGLPARHVAGSG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30308 COL14A1::HAS2-AS1 ENSG00000187955.13::ENSG00000248690.8 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA COL14A1 ENSG00000187955.13 protein_coding + + chr8:120059780-120373573:+ chr8:120332735:+ chr8:121072019-121385812:+ chr8:121344974:+ HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121993598:+ chr8:122651533-123006424:+ chr8:123005837:+ chr8:120338014 chr8:121962029 NA NA chr8:121350253 chr8:122974268 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:1.27Mb] 28 25 28 25 ONLY_REF_SPLICE YES_LDAS 0.6795 GT 1.7968 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30313 CPEB1::IGF1R ENSG00000214575.10::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE TRUE 1047 TRUE 1861 TRUE 728 CPEB1 ENSG00000214575.10 protein_coding - - chr15:82543201-82648861:- chr15:82555870:- chr15:83211951-83317612:- chr15:83224620:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CEBP1_N|61-367|6.1e-165^zf-P11|73-114|0.0026^RRM_7|370-470|2.5e-40^RRM_1|373-399|0.00018^RRM_7|489-509|1.3^RRM_1|492-550|5.3e-07^CEBP_ZZ|562-619|1.5e-31^zf-P11|574-579|3.4^zf-P11|594-605|0.0051 fn3-PARTIAL|~641-651|1e-05^Furin-like|694-708|3.6^fn3|762-809|7.1e-05^fn3|835-916|7.3e-09^Insulin_TMD|921-962|0.00044^PK_Tyr_Ser-Thr|999-1265|4.1e-99^Pkinase|1001-1264|4.9e-43^DUF4476|1032-1082|0.00015^Kinase-like|1124-1247|1e-05 ["IGF1R:Oncogene","IGF1R:ArcherDX_panel","IGF1R:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:16.00Mb] 17 14 17 11.19 ONLY_REF_SPLICE YES_LDAS 0.3615 GT 1.8256 AG 1.9656 ENST00000617958.4 1-1039 ENST00000650285.1 641-4104 chr15|-|[0]82555870-82556122[0]|[2]82557760-82557986[1]|[0]82571344-82571532[1]|[0]82627193-82627367[0]|[2]82628138-82628332[0]<==>chr15|+|[1]98891325-98891637[1]|[2]98896757-98896905[0]|[1]98899477-98899621[1]|[2]98908685-98908899[0]|[1]98911315-98911441[1]|[2]98913044-98913282[0]|[1]98915964-98916131[0]|[1]98916672-98916876[1]|[2]98922148-98922431[0]|[1]98923876-98924012[2]|[0]98924525-98924684[0]|[1]98929558-98929660[1]|[2]98930235-98930305[0]|[1]98934824-98935053[2]|[0]98935316-98935426[2]|[0]98939201-98939360[0]|[1]98942923-98943052[1]|[2]98948574-98948708[1]|[2]98957061-98957442[2] atgtcttggaaatcttcactcccaacctttttttgtcatatctacagtttctttcatgatttcctgtattggctctgtggtaaatctgtgaagtcatgtacaacatctggaaacagtttttttaagcaggaatttattattttgggcatgatggctttcatggatttttctgtaacaatgatggcattgtcactggaagaagaagcaggaaggataaaagattgctgggacaaccaggaagcacctgctctctccacgtgtagtaatgccaatatctttcgaaggataaatgccatattggataattctctggatttcagtagagtctgcactacacctataaaccgaggaattcatgatcatttgccagacttccaggactctgaagaaacagttacaagcaggatgcttttcccaacctctgcgcaagaatcttcccgtggcctcccagatgcaaatgacttgtgccttggcctgcagtccctcagtctgacaggctgggaccgaccctggagcacccaggactcagattcctcagcccagagcagcacacactcggtactgagcatgctccataacccactgggaaatgtcctaggaaaaccccccttgagcttcctgcctctggatccccttgggtctgacttggtggacaagtttccagcaccctcagttagaggatcacgcctggacacccggcccatcctggactctcgatctagcagcccctctgactcagacaccagtggcttcagctctggatcagatcatctctcagatttgatttcaagccttcgcatttctccacctctgcccttcctgtctctgtcagggggtggtcccagagaccctttaaagatgggggtagggtctcggatggaccaagagcaagctgctcttgctgcagtcactccctccccaaccagtgcttcaaagagatggccaggagcttctgtgtggccatcctgggacctcctcgaagctcccaaagaccccttcagcatagagagagaggccaggctgcaccgacaagctgcagTGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCCTCAGCGCCGAGAGCAGCGACTCCGAGGGGTTTGTGATCCACGACGGCGAGTGCATGCAGGAGTGCCCCTCGGGCTTCATCCGCAACGGCAGCCAGAGCATGTACTGCATCCCTTGTGAAGGTCCTTGCCCGAAGGTCTGTGAGGAAGAAAAGAAAACAAAGACCATTGATTCTGTTACTTCTGCTCAGATGCTCCAAGGATGCACCATCTTCAAGGGCAATTTGCTCATTAACATCCGACGGGGGAATAACATTGCTTCAGAGCTGGAGAACTTCATGGGGCTCATCGAGGTGGTGACGGGCTACGTGAAGATCCGCCATTCTCATGCCTTGGTCTCCTTGTCCTTCCTAAAAAACCTTCGCCTCATCCTAGGAGAGGAGCAGCTAGAAGGGAATTACTCCTTCTACGTCCTCGACAACCAGAACTTGCAGCAACTGTGGGACTGGGACCACCGCAACCTGACCATCAAAGCAGGGAAAATGTACTTTGCTTTCAATCCCAAATTATGTGTTTCCGAAATTTACCGCATGGAGGAAGTGACGGGGACTAAAGGGCGCCAAAGCAAAGGGGACATAAACACCAGGAACAACGGGGAGAGAGCCTCCTGTGAAAGTGACGTCCTGCATTTCACCTCCACCACCACGTCGAAGAATCGCATCATCATAACCTGGCACCGGTACCGGCCCCCTGACTACAGGGATCTCATCAGCTTCACCGTTTACTACAAGGAAGCACCCTTTAAGAATGTCACAGAGTATGATGGGCAGGATGCCTGCGGCTCCAACAGCTGGAACATGGTGGACGTGGACCTCCCGCCCAACAAGGACGTGGAGCCCGGCATCTTACTACATGGGCTGAAGCCCTGGACTCAGTACGCCGTTTACGTCAAGGCTGTGACCCTCACCATGGTGGAGAACGACCATATCCGTGGGGCCAAGAGTGAGATCTTGTACATTCGCACCAATGCTTCAGTTCCTTCCATTCCCTTGGACGTTCTTTCAGCATCGAACTCCTCTTCTCAGTTAATCGTGAAGTGGAACCCTCCCTCTCTGCCCAACGGCAACCTGAGTTACTACATTGTGCGCTGGCAGCGGCAGCCTCAGGACGGCTACCTTTACCGGCACAATTACTGCTCCAAAGACAAAATCCCCATCAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCACAGAGAACCCCAAGACTGAGGTGTGTGGTGGGGAGAAAGGGCCTTGCTGCGCCTGCCCCAAAACTGAAGCCGAGAAGCAGGCCGAGAAGGAGGAGGCTGAATACCGCAAAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCCAGACCTGAAAGGAAGCGGAGAGATGTCATGCAAGTGGCCAACACCACCATGTCCAGCCGAAGCAGGAACACCACGGCCGCAGACACCTACAACATCACCGACCCGGAAGAGCTGGAGACAGAGTACCCTTTCTTTGAGAGCAGAGTGGATAACAAGGAGAGAACTGTCATTTCTAACCTTCGGCCTTTCACATTGTACCGCATCGATATCCACAGCTGCAACCACGAGGCTGAGAAGCTGGGCTGCAGCGCCTCCAACTTCGTCTTTGCAAGGACTATGCCCGCAGAAGGAGCAGATGACATTCCTGGGCCAGTGACCTGGGAGCCAAGGCCTGAAAACTCCATCTTTTTAAAGTGGCCGGAACCTGAGAATCCCAATGGATTGATTCTAATGTATGAAATAAAATACGGATCACAAGTTGAGGATCAGCGAGAATGTGTGTCCAGACAGGAATACAGGAAGTATGGAGGGGCCAAGCTAAACCGGCTAAACCCGGGGAACTACACAGCCCGGATTCAGGCCACATCTCTCTCTGGGAATGGGTCGTGGACAGATCCTGTGTTCTTCTATGTCCAGGCCAAAACAGGATATGAAAACTTCATCCATCTGATCATCGCTCTGCCCGTCGCTGTCCTGTTGATCGTGGGAGGGTTGGTGATTATGCTGTACGTCTTCCATAGAAAGAGAAATAACAGCAGGCTGGGGAATGGAGTGCTGTATGCCTCTGTGAACCCGGAGTACTTCAGCGCTGCTGATGTGTACGTTCCTGATGAGTGGGAGGTGGCTCGGGAGAAGATCACCATGAGCCGGGAACTTGGGCAGGGGTCGTTTGGGATGGTCTATGAAGGAGTTGCCAAGGGTGTGGTGAAAGATGAACCTGAAACCAGAGTGGCCATTAAAACAGTGAACGAGGCCGCAAGCATGCGTGAGAGGATTGAGTTTCTCAACGAAGCTTCTGTGATGAAGGAGTTCAATTGTCACCATGTGGTGCGATTGCTGGGTGTGGTGTCCCAAGGCCAGCCAACACTGGTCATCATGGAACTGATGACACGGGGCGATCTCAAAAGTTATCTCCGGTCTCTGAGGCCAGAAATGGAGAATAATCCAGTCCTAGCACCTCCAAGCCTGAGCAAGATGATTCAGATGGCCGGAGAGATTGCAGACGGCATGGCATACCTCAACGCCAATAAGTTCGTCCACAGAGACCTTGCTGCCCGGAATTGCATGGTAGCCGAAGATTTCACAGTCAAAATCGGAGATTTTGGTATGACGCGAGATATCTATGAGACAGACTATTACCGGAAAGGAGGGAAAGGGCTGCTGCCCGTGCGCTGGATGTCTCCTGAGTCCCTCAAGGATGGAGTCTTCACCACTTACTCGGACGTCTGGTCCTTCGGGGTCGTCCTCTGGGAGATCGCCACACTGGCCGAGCAGCCCTACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGACAACTGTCCTGACATGCTGTTTGAACTGATGCGCATGTGCTGGCAGTATAACCCCAAGATGAGGCCTTCCTTCCTGGAGATCATCAGCAGCATCAAAGAGGAGATGGAGCCTGGCTTCCGGGAGGTCTCCTTCTACTACAGCGAGGAGAACAAGCTGCCCGAGCCGGAGGAGCTGGACCTGGAGCCAGAGAACATGGAGAGCGTCCCCCTGGACCCCTCGGCCTCCTCGTCCTCCCTGCCACTGCCCGACAGACACTCAGGACACAAGGCCGAGAACGGCCCCGGCCCTGGGGTGCTGGTCCTCCGCGCCAGCTTCGACGAGAGACAGCCTTACGCCCACATGAACGGGGGCCGCAAGAACGAGCGGGCCTTGCCGCTGCCCCAGTCTTCGACCTGCTGA MSWKSSLPTFFCHIYSFFHDFLYWLCGKSVKSCTTSGNSFFKQEFIILGMMAFMDFSVTMMALSLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAVCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRLILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKAGKMYFAFNPKLCVSEIYRMEEVTGTKGRQSKGDINTRNNGERASCESDVLHFTSTTTSKNRIIITWHRYRPPDYRDLISFTVYYKEAPFKNVTEYDGQDACGSNSWNMVDVDLPPNKDVEPGILLHGLKPWTQYAVYVKAVTLTMVENDHIRGAKSEILYIRTNASVPSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQDGYLYRHNYCSKDKIPIRKYADGTIDIEEVTENPKTEVCGGEKGPCCACPKTEAEKQAEKEEAEYRKVFENFLHNSIFVPRPERKRRDVMQVANTTMSSRSRNTTAADTYNITDPEELETEYPFFESRVDNKERTVISNLRPFTLYRIDIHSCNHEAEKLGCSASNFVFARTMPAEGADDIPGPVTWEPRPENSIFLKWPEPENPNGLILMYEIKYGSQVEDQRECVSRQEYRKYGGAKLNRLNPGNYTARIQATSLSGNGSWTDPVFFYVQAKTGYENFIHLIIALPVAVLLIVGGLVIMLYVFHRKRNNSRLGNGVLYASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEENKLPEPEELDLEPENMESVPLDPSASSSSLPLPDRHSGHKAENGPGPGVLVLRASFDERQPYAHMNGGRKNERALPLPQSSTC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30317 NCBP1::TMOD1 ENSG00000136937.13::ENSG00000136842.14 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA NCBP1 ENSG00000136937.13 protein_coding + + chr9:97633668-97673748:+ chr9:97633915:+ chr9:100395950-100436030:+ chr9:100396197:+ TMOD1 ENSG00000136842.14 protein_coding + + chr9:97501180-97601743:+ chr9:97524141:+ chr9:100263462-100364025:+ chr9:100286423:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_REARRANGEMENT:+:[31878] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1282 GT 1.5656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30319 CPEB1::IGF1R ENSG00000214575.10::ENSG00000140443.15 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE TRUE 1048 TRUE 1861 TRUE 728 CPEB1 ENSG00000214575.10 protein_coding - - chr15:82543201-82648861:- chr15:82571344:- chr15:83211951-83317612:- chr15:83240094:- IGF1R ENSG00000140443.15 protein_coding + + chr15:98648539-98964530:+ chr15:98891325:+ chr15:99191768-99507759:+ chr15:99434554:+ chr15:82554175 chr15:98888876 NA NA chr15:83222925 chr15:99432105 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CEBP1_N|61-367|6.1e-165^zf-P11|73-114|0.0026^RRM_7|370-470|2.5e-40^RRM_1|373-399|0.00018^RRM_7|489-509|1.3^RRM_1|492-550|5.3e-07 fn3-PARTIAL|~641-651|1e-05^Furin-like|694-708|3.6^fn3|762-809|7.1e-05^fn3|835-916|7.3e-09^Insulin_TMD|921-962|0.00044^PK_Tyr_Ser-Thr|999-1265|4.1e-99^Pkinase|1001-1264|4.9e-43^DUF4476|1032-1082|0.00015^Kinase-like|1124-1247|1e-05 ["IGF1R:Oncogene","IGF1R:ArcherDX_panel","IGF1R:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:16.00Mb] 10 9 10 2.81 ONLY_REF_SPLICE YES_LDAS 0.1642 GT 1.8062 AG 1.9656 ENST00000617958.4 1-559 ENST00000650285.1 641-4104 chr15|-|[0]82571344-82571532[1]|[0]82627193-82627367[0]|[2]82628138-82628332[0]<==>chr15|+|[1]98891325-98891637[1]|[2]98896757-98896905[0]|[1]98899477-98899621[1]|[2]98908685-98908899[0]|[1]98911315-98911441[1]|[2]98913044-98913282[0]|[1]98915964-98916131[0]|[1]98916672-98916876[1]|[2]98922148-98922431[0]|[1]98923876-98924012[2]|[0]98924525-98924684[0]|[1]98929558-98929660[1]|[2]98930235-98930305[0]|[1]98934824-98935053[2]|[0]98935316-98935426[2]|[0]98939201-98939360[0]|[1]98942923-98943052[1]|[2]98948574-98948708[1]|[2]98957061-98957442[2] atgtcttggaaatcttcactcccaacctttttttgtcatatctacagtttctttcatgatttcctgtattggctctgtggtaaatctgtgaagtcatgtacaacatctggaaacagtttttttaagcaggaatttattattttgggcatgatggctttcatggatttttctgtaacaatgatggcattgtcactggaagaagaagcaggaaggataaaagattgctgggacaaccaggaagcacctgctctctccacgtgtagtaatgccaatatctttcgaaggataaatgccatattggataattctctggatttcagtagagtctgcactacacctataaaccgaggaattcatgatcatttgccagacttccaggactctgaagaaacagttacaagcaggatgcttttcccaacctctgcgcaagaatcttcccgtggcctcccagatgcaaatgacttgtgccttggcctgcagtccctcagtctgacaggctgggaccgaccctggagcacccaggactcagattcctcagcccagagcagcacacactcggTGTGCCCAAGCACGTGTGGGAAGCGGGCGTGCACCGAGAACAATGAGTGCTGCCACCCCGAGTGCCTGGGCAGCTGCAGCGCGCCTGACAACGACACGGCCTGTGTAGCTTGCCGCCACTACTACTATGCCGGTGTCTGTGTGCCTGCCTGCCCGCCCAACACCTACAGGTTTGAGGGCTGGCGCTGTGTGGACCGTGACTTCTGCGCCAACATCCTCAGCGCCGAGAGCAGCGACTCCGAGGGGTTTGTGATCCACGACGGCGAGTGCATGCAGGAGTGCCCCTCGGGCTTCATCCGCAACGGCAGCCAGAGCATGTACTGCATCCCTTGTGAAGGTCCTTGCCCGAAGGTCTGTGAGGAAGAAAAGAAAACAAAGACCATTGATTCTGTTACTTCTGCTCAGATGCTCCAAGGATGCACCATCTTCAAGGGCAATTTGCTCATTAACATCCGACGGGGGAATAACATTGCTTCAGAGCTGGAGAACTTCATGGGGCTCATCGAGGTGGTGACGGGCTACGTGAAGATCCGCCATTCTCATGCCTTGGTCTCCTTGTCCTTCCTAAAAAACCTTCGCCTCATCCTAGGAGAGGAGCAGCTAGAAGGGAATTACTCCTTCTACGTCCTCGACAACCAGAACTTGCAGCAACTGTGGGACTGGGACCACCGCAACCTGACCATCAAAGCAGGGAAAATGTACTTTGCTTTCAATCCCAAATTATGTGTTTCCGAAATTTACCGCATGGAGGAAGTGACGGGGACTAAAGGGCGCCAAAGCAAAGGGGACATAAACACCAGGAACAACGGGGAGAGAGCCTCCTGTGAAAGTGACGTCCTGCATTTCACCTCCACCACCACGTCGAAGAATCGCATCATCATAACCTGGCACCGGTACCGGCCCCCTGACTACAGGGATCTCATCAGCTTCACCGTTTACTACAAGGAAGCACCCTTTAAGAATGTCACAGAGTATGATGGGCAGGATGCCTGCGGCTCCAACAGCTGGAACATGGTGGACGTGGACCTCCCGCCCAACAAGGACGTGGAGCCCGGCATCTTACTACATGGGCTGAAGCCCTGGACTCAGTACGCCGTTTACGTCAAGGCTGTGACCCTCACCATGGTGGAGAACGACCATATCCGTGGGGCCAAGAGTGAGATCTTGTACATTCGCACCAATGCTTCAGTTCCTTCCATTCCCTTGGACGTTCTTTCAGCATCGAACTCCTCTTCTCAGTTAATCGTGAAGTGGAACCCTCCCTCTCTGCCCAACGGCAACCTGAGTTACTACATTGTGCGCTGGCAGCGGCAGCCTCAGGACGGCTACCTTTACCGGCACAATTACTGCTCCAAAGACAAAATCCCCATCAGGAAGTATGCCGACGGCACCATCGACATTGAGGAGGTCACAGAGAACCCCAAGACTGAGGTGTGTGGTGGGGAGAAAGGGCCTTGCTGCGCCTGCCCCAAAACTGAAGCCGAGAAGCAGGCCGAGAAGGAGGAGGCTGAATACCGCAAAGTCTTTGAGAATTTCCTGCACAACTCCATCTTCGTGCCCAGACCTGAAAGGAAGCGGAGAGATGTCATGCAAGTGGCCAACACCACCATGTCCAGCCGAAGCAGGAACACCACGGCCGCAGACACCTACAACATCACCGACCCGGAAGAGCTGGAGACAGAGTACCCTTTCTTTGAGAGCAGAGTGGATAACAAGGAGAGAACTGTCATTTCTAACCTTCGGCCTTTCACATTGTACCGCATCGATATCCACAGCTGCAACCACGAGGCTGAGAAGCTGGGCTGCAGCGCCTCCAACTTCGTCTTTGCAAGGACTATGCCCGCAGAAGGAGCAGATGACATTCCTGGGCCAGTGACCTGGGAGCCAAGGCCTGAAAACTCCATCTTTTTAAAGTGGCCGGAACCTGAGAATCCCAATGGATTGATTCTAATGTATGAAATAAAATACGGATCACAAGTTGAGGATCAGCGAGAATGTGTGTCCAGACAGGAATACAGGAAGTATGGAGGGGCCAAGCTAAACCGGCTAAACCCGGGGAACTACACAGCCCGGATTCAGGCCACATCTCTCTCTGGGAATGGGTCGTGGACAGATCCTGTGTTCTTCTATGTCCAGGCCAAAACAGGATATGAAAACTTCATCCATCTGATCATCGCTCTGCCCGTCGCTGTCCTGTTGATCGTGGGAGGGTTGGTGATTATGCTGTACGTCTTCCATAGAAAGAGAAATAACAGCAGGCTGGGGAATGGAGTGCTGTATGCCTCTGTGAACCCGGAGTACTTCAGCGCTGCTGATGTGTACGTTCCTGATGAGTGGGAGGTGGCTCGGGAGAAGATCACCATGAGCCGGGAACTTGGGCAGGGGTCGTTTGGGATGGTCTATGAAGGAGTTGCCAAGGGTGTGGTGAAAGATGAACCTGAAACCAGAGTGGCCATTAAAACAGTGAACGAGGCCGCAAGCATGCGTGAGAGGATTGAGTTTCTCAACGAAGCTTCTGTGATGAAGGAGTTCAATTGTCACCATGTGGTGCGATTGCTGGGTGTGGTGTCCCAAGGCCAGCCAACACTGGTCATCATGGAACTGATGACACGGGGCGATCTCAAAAGTTATCTCCGGTCTCTGAGGCCAGAAATGGAGAATAATCCAGTCCTAGCACCTCCAAGCCTGAGCAAGATGATTCAGATGGCCGGAGAGATTGCAGACGGCATGGCATACCTCAACGCCAATAAGTTCGTCCACAGAGACCTTGCTGCCCGGAATTGCATGGTAGCCGAAGATTTCACAGTCAAAATCGGAGATTTTGGTATGACGCGAGATATCTATGAGACAGACTATTACCGGAAAGGAGGGAAAGGGCTGCTGCCCGTGCGCTGGATGTCTCCTGAGTCCCTCAAGGATGGAGTCTTCACCACTTACTCGGACGTCTGGTCCTTCGGGGTCGTCCTCTGGGAGATCGCCACACTGGCCGAGCAGCCCTACCAGGGCTTGTCCAACGAGCAAGTCCTTCGCTTCGTCATGGAGGGCGGCCTTCTGGACAAGCCAGACAACTGTCCTGACATGCTGTTTGAACTGATGCGCATGTGCTGGCAGTATAACCCCAAGATGAGGCCTTCCTTCCTGGAGATCATCAGCAGCATCAAAGAGGAGATGGAGCCTGGCTTCCGGGAGGTCTCCTTCTACTACAGCGAGGAGAACAAGCTGCCCGAGCCGGAGGAGCTGGACCTGGAGCCAGAGAACATGGAGAGCGTCCCCCTGGACCCCTCGGCCTCCTCGTCCTCCCTGCCACTGCCCGACAGACACTCAGGACACAAGGCCGAGAACGGCCCCGGCCCTGGGGTGCTGGTCCTCCGCGCCAGCTTCGACGAGAGACAGCCTTACGCCCACATGAACGGGGGCCGCAAGAACGAGCGGGCCTTGCCGCTGCCCCAGTCTTCGACCTGCTGA MSWKSSLPTFFCHIYSFFHDFLYWLCGKSVKSCTTSGNSFFKQEFIILGMMAFMDFSVTMMALSLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSAQSSTHSVCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRLILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKAGKMYFAFNPKLCVSEIYRMEEVTGTKGRQSKGDINTRNNGERASCESDVLHFTSTTTSKNRIIITWHRYRPPDYRDLISFTVYYKEAPFKNVTEYDGQDACGSNSWNMVDVDLPPNKDVEPGILLHGLKPWTQYAVYVKAVTLTMVENDHIRGAKSEILYIRTNASVPSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQDGYLYRHNYCSKDKIPIRKYADGTIDIEEVTENPKTEVCGGEKGPCCACPKTEAEKQAEKEEAEYRKVFENFLHNSIFVPRPERKRRDVMQVANTTMSSRSRNTTAADTYNITDPEELETEYPFFESRVDNKERTVISNLRPFTLYRIDIHSCNHEAEKLGCSASNFVFARTMPAEGADDIPGPVTWEPRPENSIFLKWPEPENPNGLILMYEIKYGSQVEDQRECVSRQEYRKYGGAKLNRLNPGNYTARIQATSLSGNGSWTDPVFFYVQAKTGYENFIHLIIALPVAVLLIVGGLVIMLYVFHRKRNNSRLGNGVLYASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFREVSFYYSEENKLPEPEELDLEPENMESVPLDPSASSSSLPLPDRHSGHKAENGPGPGVLVLRASFDERQPYAHMNGGRKNERALPLPQSSTC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Insulin-like growth factor 1 receptor TK InsR P08069 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30320 TYW1B::YEATS2 ENSG00000277149.5::ENSG00000163872.16 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE TRUE 1051 FALSE NA FALSE NA TYW1B ENSG00000277149.5 protein_coding - - chr7:72558744-72828200:- chr7:72802400:- chr7:72023729-72298779:- chr7:72267415:- YEATS2 ENSG00000163872.16 protein_coding + + chr3:183697797-183812624:+ chr3:183772305:+ chr3:183415585-183530412:+ chr3:183490093:+ chr7:72789357 chr3:183765476 NA NA chr7:72254374 chr3:183483264 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Flavodoxin_1|46-171|1e-21^Radical_SAM|349-527|2.4e-14^Wyosine_form|531-593|5.7e-25 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr3] 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1923 GT 1.231 AG 1.8892 ENST00000620995.5 1-846 ENST00000305135.10 1948-4269 chr7|-|[2]72802400-72802522[0]|[2]72807066-72807356[0]|[2]72810471-72810665[0]|[2]72815380-72815481[0]|[2]72826855-72826985[1]|[0]72828072-72828075[0]<==>chr3|+|[0]183772305-183772563[0]|[1]183773633-183773794[0]|[1]183775915-183776123[2]|[0]183777542-183777700[2]|[0]183786125-183786301[2]|[0]183790797-183790980[0]|[1]183797923-183798051[0]|[1]183798891-183798989[0]|[1]183800466-183800568[1]|[2]183801455-183801528[0]|[1]183803256-183803335[2]|[0]183803987-183804188[0]|[1]183806866-183807092[2]|[0]183808030-183808104[2]|[0]183809097-183809170[1]|[2]183810475-183810583[2] atggatccttctgcggatacatgggacctctcctcacctttaatatcattatggataaacaggttttacatttatctgggctttgctgttagcattagcctttggatttgtgtccagattgtcatcgagatgcagggatttgcaacagttcttgctgaagcagttacgtccctggatctgcctgtggccattattaatctaaaagaatatgatccagatgatcatctgatagaagaggtgactagtaaaaatgtctgtgtcttcctggttgcgacatacactgacggcctaccaaccgaaagtgcagagtggttctgcaaatggttagaggaagcatccattgattttcgatttggcaaaacttacctgaagggtatgagagatgcggtatttggcctgggaaattctgcctatgctagccacttcaacaaggttggcaaaaatgttgacaagtggctctggatgcttggcgtgcatcgtgtgatgagtcgaggggagggcgactgcgacgtggttaaaagcaagcacggcagcattgaggccaacttcagagcatggaagaccaagttcatctcccagctgcaggcacttcagaaaggggagagaaagaagtcctgtggcggccactgcaagaaaggcaaatgtgaatctcaccaacatggctcagaggagagggaggaaggatctcaagagcaggacgaattgcatcacagagacaccaaggaggaagaacccttcgagagctccagtgaagaagagtttggtggtgaggaccatcagagcctaaattccattgttgatgttgaagatttgggcaaaattatggatcacgtgaagaaagaaaagGTTGTCGGGGTACCAGTTGGGTCTGCTTTACCTTCAACAGTGAAGCAGGCTGTGGCGATCAGTGGTGGCCAGATCCTGGTAGCCAAGGCCAGCTCTTCTGTCTCCAAAGCAGTTGGGCCAAAGCAAGTTGTAACCCAAGGAGTTGCCAAAGCAATTGTGAGTGGAGGTGGAGGAACCATTGTTGCTCAGCCAGTGCAGACCTTAACCAAGGCCCAGGTTACTGCCGCTGGTCCTCAGAAGAGTGGATCCCAGGGTTCAGTAATGGCAACGTTGCAGCTACCAGCCACTAATTTGGCCAACTTGGCAAATTTGCCTCCTGGCACTAAACTCTACCTAACTACAAACAGCAAGAACCCTTCAGGAAAAGGAAAACTGCTGCTGATCCCTCAAGGAGCCATCCTGCGAGCTACGAACAATGCTAATCTCCAGTCTGGCTCAGCTGCCAGTGGTGGGAGTGGTGCCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGCAGTGGCAGCGGTGGAGGCGGCAGCACAGGAGGAGGAGGAGGAACAGCAGGAGGAGGAACTCAAAGTACTGCTGGCCCTGGAGGGATATCTCAGCACCTGACTTACACATCTTACATCCTCAAGCAAACTCCCCAGGGCACATTTTTAGTTGGCCAGCCATCACCCCAGACTTCTGGAAAACAACTCACCACTGGGTCAGTGGTCCAAGGAACACTGGGAGTCAGCACATCTTCTGCACAAGGACAACAAACGCTAAAAGTCATCTCTGGACAGAAAACCACATTGTTTACACAGGCAGCCCATGGAGGACAGGCATCTCTAATGAAAATATCCGATAGCACCTTGAAGACTGTGCCAGCCACCTCACAGCTCTCGAAGCCTGGAACCACAATGCTGAGAGTAGCAGGAGGGGTTATCACAACTGCCACTTCCCCTGCCGTGGCCCTCTCAGCAAACGGTCCTGCACAACAGTCTGAAGGAATGGCTCCCGTGTCTTCATCTACGGTCAGTTCTGTAACGAAAACTTCTGGGCAGCAGCAAGTGTGTGTGAGCCAGGCCACCGTGGGAACCTGCAAGGCTGCCACCCCCACCGTCGTCAGCGCCACGTCCCTCGTGCCTACACCAAACCCCATCTCTGGGAAAGCCACAGTATCCGGACTGTTAAAGATTCACTCCAGTCAGTCCAGTCCGCAGCAGGCCGTCCTGACGATTCCCAGCCAGCTCAAACCACTCAGCGTAAACACATCTGGAGGGGTGCAGACGATCCTGATGCCTGTGAATAAAGTGGTTCAGTCATTTTCTACCAGCAAGCCACCTGCCATTCTGCCTGTAGCTGCCCCAACTCCAGTTGTCCCCAGCTCTGCTCCAGCAGCTGTTGCAAAAGTGAAGACTGAACCAGAAACACCTGGACCGAGTTGCCTCTCTCAGGAGGGTCAGACAGCAGTGAAAACAGAAGAAAGTTCTGAGCTGGGAAACTATGTCATTAAGATAGACCATTTAGAAACTATCCAGCAACTCCTAACTGCAGTAGTAAAGAAGATTCCATTAATCACTGCAAAAAGTGAAGATGCCAGCTGCTTTTCTGCAAAGTCTGTGGAGCAGTACTATGGCTGGAACATTGGAAAAAGGAGAGCCGCTGAGTGGCAAAGAGCAATGACAATGCGAAAAGTCTTACAAGAAATCCTGGAGAAGAATCCGAGATTTCACCACCTGACTCCCCTCAAAACCAAGCACATCGCTCACTGGTGCCGCTGTCATGGCTACACCCCACCGGACCCTGAGAGCCTGAGGAATGACGGGGACTCCATCGAGGACGTGCTGACCCAGATCGACAGCGAGCCCGAGTGCCCATCATCATTCTCCTCTGCTGACAACCTCTGCCGCAAACTGGAGGACCTGCAACAGTTCCAGAAAAGGGAACCCGAGAATGAGGAGGAGGTGGACATCCTCAGCCTCTCCGAGCCAGTGAAGATAAACATCAAGAAGGAGCAGGAAGAGAAACAAGAGGAAGTCAAGTTCTACCTGCCACCAACCCCAGGGTCTGAATTTATTGGGGATGTCACACAGAAGATTGGGATCACCCTGCAGCCCGTGGCACTCCACAGGAACGTGTATGCGTCCGTGGTGGAGGACATGATCCTGAAGGCTACAGAACAGCTGGTGAATGATATCCTGAGACAGGCTTTGGCAGTTGGATACCAGACAGCTTCTCACAACAGGATTCCCAAAGAAATTACAGTGAGTAATATTCACCAGGCCATTTGCAACATTCCTTTTCTGGACTTCCTCACAAACAAACACATGGGAATATTGAATGAGGACCAGTGA MDPSADTWDLSSPLISLWINRFYIYLGFAVSISLWICVQIVIEMQGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYTDGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRDAVFGLGNSAYASHFNKVGKNVDKWLWMLGVHRVMSRGEGDCDVVKSKHGSIEANFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCESHQHGSEEREEGSQEQDELHHRDTKEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKVVGVPVGSALPSTVKQAVAISGGQILVAKASSSVSKAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKAQVTAAGPQKSGSQGSVMATLQLPATNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQGAILRATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGPGGISQHLTYTSYILKQTPQGTFLVGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLKVISGQKTTLFTQAAHGGQASLMKISDSTLKTVPATSQLSKPGTTMLRVAGGVITTATSPAVALSANGPAQQSEGMAPVSSSTVSSVTKTSGQQQVCVSQATVGTCKAATPTVVSATSLVPTPNPISGKATVSGLLKIHSSQSSPQQAVLTIPSQLKPLSVNTSGGVQTILMPVNKVVQSFSTSKPPAILPVAAPTPVVPSSAPAAVAKVKTEPETPGPSCLSQEGQTAVKTEESSELGNYVIKIDHLETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMTMRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRNDGDSIEDVLTQIDSEPECPSSFSSADNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIKKEQEEKQEEVKFYLPPTPGSEFIGDVTQKIGITLQPVALHRNVYASVVEDMILKATEQLVNDILRQALAVGYQTASHNRIPKEITVSNIHQAICNIPFLDFLTNKHMGILNEDQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30322 RALA::YAE1 ENSG00000006451.8::ENSG00000241127.8 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE TRUE 1060 FALSE NA FALSE NA RALA ENSG00000006451.8 protein_coding + + chr7:39623565-39708120:+ chr7:39623825:+ chr7:39663164-39747719:+ chr7:39663424:+ YAE1 ENSG00000241127.8 protein_coding + + chr7:39566385-39610320:+ chr7:39609617:+ chr7:39605984-39649919:+ chr7:39649216:+ chr7:39627883,chr7:39627882 chr7:39582463,chr7:39582459 NA NA chr7:39667482,chr7:39667481 chr7:39622062,chr7:39622058 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RALA:Oncogene"] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1795 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30328 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE FALSE NA TRUE 4787 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85536209 chr1:85536208 NA NA chr1:86001892 chr1:86001891 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 15 8 2.4 ONLY_REF_SPLICE YES_LDAS 0.1334 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30330 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 SKLMS1 SRR8615681 SRR8670684 SOFT_TISSUE sarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96630835,chr5:96630835,chr5:96630833 chr5:96631662,chr5:96631665,chr5:96631657 NA NA chr5:95966539,chr5:95966539,chr5:95966537 chr5:95967366,chr5:95967369,chr5:95967361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 6 3 6 3 ONLY_REF_SPLICE YES_LDAS 0.1154 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30337 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1061 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186451:+ chr16:57220049-57274381:+ chr16:57220363:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:32.25Mb] 24 14 24 4.73 ONLY_REF_SPLICE YES_LDAS 0.3424 GT 1.5628 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30340 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1062 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186785:+ chr16:57220049-57274381:+ chr16:57220697:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:32.25Mb] 13 22 13 7.2 ONLY_REF_SPLICE YES_LDAS 0.2407 GT 1.8256 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30341 ARID4A::PSMA3 ENSG00000032219.19::ENSG00000100567.13 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1064 TRUE 1881 TRUE 733 ARID4A ENSG00000032219.19 protein_coding + + chr14:58298504-58373887:+ chr14:58306112:+ chr14:58765222-58840605:+ chr14:58772830:+ PSMA3 ENSG00000100567.13 protein_coding + + chr14:58244843-58272012:+ chr14:58263705:+ chr14:58711561-58738730:+ chr14:58730423:+ chr14:58312859,chr14:58312859 chr14:58261935,chr14:58261932 NA NA chr14:58779577,chr14:58779577 chr14:58728653,chr14:58728650 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tudor_2|63-96|6.7e-07^RBB1NT|170-262|2e-40 none ["ARID4A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.03Mb];LOCAL_REARRANGEMENT:+:[26373] 13 15 13 12.9 ONLY_REF_SPLICE YES_LDAS 0.3086 GT 1.8323 AG 1.5628 ENST00000395168.7 1-274 ENST00000412908.6 457-747 chr14|+|[0]58299855-58299860[2]|[0]58301580-58301690[2]|[0]58304944-58305009[2]|[0]58306022-58306112[0]<==>chr14|+|[0]58263705-58263770[2]|[0]58267474-58267520[1]|[2]58270418-58270485[0]|[1]58270934-58270998[2]|[0]58271851-58271895[2] atgaaggcggcagatgagcctgcctacctgacagtgggaaccgatgtcagtgccaagtaccgaggtgccttctgtgaggcaaagattaagactgtgaaaaggctggtgaaagttaaggtactcctgaaacaggataataccacacaattggtacaagatgaccaagtaaagggtcctttaagagttggagctattgttgaaacaaggacatctgatggatcttttcaggaagctattatcagcaagttgacagatgctagttggtataccgtggGGTTATTGGGGCTGTGCCATCGGCAAAGCCAGGCAAGCTGCAAAGACGGAAATAGAGAAGCTTCAGATGAAAGAAATGACCTGCCGTGATATCGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGACGAAGTTAAGGATAAAGCTTTTGAACTAGAACTCAGCTGGGTTGGTGAATTAACTAATGGAAGACATGAAATTGTTCCAAAAGATATAAGAGAAGAAGCAGAGAAATATGCTAAGGAATCTCTGAAGGAAGAAGATGAATCAGATGATGATAATATGTAA MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPLRVGAIVETRTSDGSFQEAIISKLTDASWYTVGLLGLCHRQSQASCKDGNREASDERNDLP*YR*RSCKNNLHST*RS*G*SF*TRTQLGW*IN*WKT*NCSKRYKRRSREIC*GISEGRR*IR***YV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30343 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186451:+ chr16:57220049-57274381:+ chr16:57220363:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89523763:+ chr16:89557127-89624174:+ chr16:89590171:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:32.25Mb] 11 16 11 3.55 INCL_NON_REF_SPLICE YES_LDAS 0.1734 GT 1.5628 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30344 SLC25A44::ENSG00000285677 ENSG00000160785.14::ENSG00000285677.2 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA SLC25A44 ENSG00000160785.14 protein_coding + + chr1:156193932-156212796:+ chr1:156200472:+ chr1:156163723-156182587:+ chr1:156170263:+ ENSG00000285677 ENSG00000285677.2 lncRNA + + chr1:156001953-156033342:+ chr1:156032827:+ chr1:155971744-156003133:+ chr1:156002618:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 8 11 6.6 ONLY_REF_SPLICE YES_LDAS 0.2097 GT 1.9329 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30346 ARID4A::PSMA3 ENSG00000032219.19::ENSG00000100567.13 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1065 TRUE 1881 TRUE 733 ARID4A ENSG00000032219.19 protein_coding + + chr14:58298504-58373887:+ chr14:58301690:+ chr14:58765222-58840605:+ chr14:58768408:+ PSMA3 ENSG00000100567.13 protein_coding + + chr14:58244843-58272012:+ chr14:58263705:+ chr14:58711561-58738730:+ chr14:58730423:+ chr14:58312859,chr14:58312859 chr14:58261935,chr14:58261932 NA NA chr14:58779577,chr14:58779577 chr14:58728653,chr14:58728650 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Tudor_2|63-96|6.7e-07 none ["ARID4A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.03Mb];LOCAL_REARRANGEMENT:+:[26373] 9 7 9 2.1 ONLY_REF_SPLICE YES_LDAS 0.1322 GT 1.8256 AG 1.5628 ENST00000395168.7 1-117 ENST00000412908.6 457-747 chr14|+|[0]58299855-58299860[2]|[0]58301580-58301690[2]<==>chr14|+|[0]58263705-58263770[2]|[0]58267474-58267520[1]|[2]58270418-58270485[0]|[1]58270934-58270998[2]|[0]58271851-58271895[2] atgaaggcggcagatgagcctgcctacctgacagtgggaaccgatgtcagtgccaagtaccgaggtgccttctgtgaggcaaagattaagactgtgaaaaggctggtgaaagttaagGGTTATTGGGGCTGTGCCATCGGCAAAGCCAGGCAAGCTGCAAAGACGGAAATAGAGAAGCTTCAGATGAAAGAAATGACCTGCCGTGATATCGTTAAAGAAGTTGCAAAAATAATTTACATAGTACATGACGAAGTTAAGGATAAAGCTTTTGAACTAGAACTCAGCTGGGTTGGTGAATTAACTAATGGAAGACATGAAATTGTTCCAAAAGATATAAGAGAAGAAGCAGAGAAATATGCTAAGGAATCTCTGAAGGAAGAAGATGAATCAGATGATGATAATATGTAA MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30347 PSME3IP1::ADGRG5 ENSG00000172775.18::ENSG00000159618.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1067 FALSE NA FALSE NA PSME3IP1 ENSG00000172775.18 protein_coding - - chr16:57152466-57186116:- chr16:57164001:- chr16:57186378-57220028:- chr16:57197913:- ADGRG5 ENSG00000159618.16 protein_coding + + chr16:57542643-57591681:+ chr16:57563091:+ chr16:57576555-57625593:+ chr16:57597003:+ chr16:57160596,chr16:57160598 chr16:57562681,chr16:57562679 NA NA chr16:57194508,chr16:57194510 chr16:57596593,chr16:57596591 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FAM192A_Fyv6_N|15-116|2.8e-36^DinB|57-99|0.015^DinB|85-160|3.5e-05^FAM192A_Fyv6_N|129-136|0.65^FAM192A_Fyv6_N|162-190|0.62 Adeno_E3_CR1|171-227|8.5e-05^GPS|188-232|2.8e-19^7tm_2|247-498|2.1e-33^ATP-synt_I|250-306|0.016^ATP-synt_I|401-452|2.9e-05^DUF3301|425-455|0.00012^ATP-synt_I|470-509|0.26^DUF3301|494-516|0.58 none 8 5 8 5 ONLY_REF_SPLICE YES_LDAS 0.1549 GT 1.7232 AG 1.7465 ENST00000309137.13 1-547 ENST00000349457.8 141-1587 chr16|-|[0]57164001-57164065[2]|[1]57167093-57167226[0]|[2]57172251-57172372[1]|[0]57172776-57172874[1]|[0]57173728-57173854[0]<==>chr16|+|[2]57563091-57563247[2]|[0]57563848-57563979[2]|[0]57565034-57565150[2]|[0]57566599-57566751[2]|[0]57567470-57567591[1]|[2]57567856-57568124[0]|[1]57570418-57570535[1]|[2]57574815-57575092[0]|[1]57575438-57575538[2] atggatggaggggatgatggtaaccttattatcaaaaagaggtttgtgtctgaggcagaactagatgaacggcgcaaaaggaggcaagaagaatgggagaaagttcgaaaacctgaagatccagaagaatgtccagaggaggtttatgaccctcgatctctatatgaaaggctacaggaacagaaggacaggaagcagcaggagtacgaggaacagttcaaattcaaaaacatggtaagaggcttagatgaagatgagaccaacttccttgatgaggtttctcgacagcaggaactaatagaaaagcaacgaagagaagaagaactgaaagaactgaaggaatacagaaataacctcaagaaggttggaatttctcaagagaacaagaaggaagtggaaaagaaactgactgtgaagcctatagaaaccaagaacaagttctcccaggcgaagctgttggcaggagctgtgaagcataagagctcagagagtggcaacagtgtgaaaagactgaaaccggaccctgagccagatgacaagaatcaagTCAACTCCACCAGCTGGAGCAGATGCTACTGAACACCAGCTTCCCAGGCTACAACCTGACCTTGCAGACACCCACCATCCAGTCTCTGGCCTTCAAGCTGAGCTGTGACTTCTCTGGCCTCTCGCTGACCAGTGCCACTCTGAAGCGGGTGCCCCAGGCAGGAGGTCAGCATGCCCGGGGTCAGCACGCCATGCAGTTCCCCGCCGAGCTGACCCGGGACGCCTGCAAGACCCGCCCCAGGGAGCTGCGGCTCATCTGTATCTACTTCTCCAACACCCACTTTTTCAAGGATGAAAACAACTCATCTCTGCTGAATAACTACGTCCTGGGGGCCCAGCTGAGTCATGGGCACGTGAACAACCTCAGGGATCCTGTGAACATCAGCTTCTGGCACAACCAAAGCCTGGAAGGCTACACCCTGACCTGTGTCTTCTGGAAGGAGGGAGCCAGGAAACAGCCCTGGGGGGGCTGGAGCCCTGAGGGCTGTCGTACAGAGCAGCCCTCCCACTCTCAGGTGCTCTGCCGCTGCAACCACCTCACCTACTTTGCTGTTCTCATGCAACTCTCCCCAGCCCTGGTCCCTGCAGAGTTGCTGGCACCTCTTACGTACATCTCCCTCGTGGGCTGCAGCATCTCCATCGTGGCCTCGCTGATCACAGTCCTGCTGCACTTCCATTTCAGGAAGCAGAGTGACTCCTTAACACGCATCCACATGAACCTGCATGCCTCCGTGCTGCTCCTGAACATCGCCTTCCTGCTGAGCCCCGCATTCGCAATGTCTCCTGTGCCCGGGTCAGCATGCACGGCTCTGGCCGCTGCCCTGCACTACGCGCTGCTCAGCTGCCTCACCTGGATGGCCATCGAGGGCTTCAACCTCTACCTCCTCCTCGGGCGTGTCTACAACATCTACATCCGCAGATATGTGTTCAAGCTTGGTGTGCTAGGCTGGGGGGCCCCAGCCCTCCTGGTGCTGCTTTCCCTCTCTGTCAAGAGCTCGGTATACGGACCCTGCACAATCCCCGTCTTCGACAGCTGGGAGAATGGCACAGGCTTCCAGAACATGTCCATATGCTGGGTGCGGAGCCCCGTGGTGCACAGTGTCCTGGTCATGGGCTACGGCGGCCTCACGTCCCTCTTCAACCTGGTGGTGCTGGCCTGGGCGCTGTGGACCCTGCGCAGGCTGCGGGAGCGGGCGGATGCACCAAGTGTCAGGGCCTGCCATGACACTGTCACTGTGCTGGGCCTCACCGTGCTGCTGGGAACCACCTGGGCCTTGGCCTTCTTTTCTTTTGGCGTCTTCCTGCTGCCCCAGCTGTTCCTCTTCACCATCTTAAACTCGCTCTACGGTTTCTTCCTTTTCCTGTGGTTCTGCTCCCAGCGGTGCCGCTCAGAAGCAGAGGCCAAGGCACAGATAGAGGCCTTCAGCTCCTCCCAAACAACACAGTAG MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYEEQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKPIETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDKNQVNSTSWSRCY*TPASQATT*PCRHPPSSLWPSS*AVTSLASR*PVPL*SGCPRQEVSMPGVSTPCSSPPS*PGTPARPAPGSCGSSVSTSPTPTFSRMKTTHLC*ITTSWGPS*VMGT*TTSGIL*TSASGTTKAWKATP*PVSSGRREPGNSPGGAGALRAVVQSSPPTLRCSAAATTSPTLLFSCNSPQPWSLQSCWHLLRTSPSWAAASPSWPR*SQSCCTSISGSRVTP*HAST*TCMPPCCS*TSPSC*APHSQCLLCPGQHARLWPLPCTTRCSAASPGWPSRASTSTSSSGVSTTSTSADMCSSLVC*AGGPQPSWCCFPSLSRARYTDPAQSPSSTAGRMAQASRTCPYAGCGAPWCTVSWSWATAASRPSSTWWCWPGRCGPCAGCGSGRMHQVSGPAMTLSLCWASPCCWEPPGPWPSFLLASSCCPSCSSSPS*TRSTVSSFSCGSAPSGAAQKQRPRHR*RPSAPPKQHS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30348 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1063 TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57187050:+ chr16:57220049-57274381:+ chr16:57220962:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89524006:+ chr16:89557127-89624174:+ chr16:89590414:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:32.25Mb] 7 22 7 3.88 ONLY_REF_SPLICE YES_LDAS 0.1296 GT 1.7819 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30353 RSPRY1::SPG7 ENSG00000159579.14::ENSG00000197912.16 SKHEP1 SRR8615682 SRR8670683 LIVER carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 1880 TRUE 732 RSPRY1 ENSG00000159579.14 protein_coding + + chr16:57186137-57240469:+ chr16:57186785:+ chr16:57220049-57274381:+ chr16:57220697:+ SPG7 ENSG00000197912.16 protein_coding + + chr16:89490719-89557766:+ chr16:89523763:+ chr16:89557127-89624174:+ chr16:89590171:+ chr16:57196167 chr16:89519003 NA NA chr16:57230079 chr16:89585411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:32.25Mb] 4 26 4 6.64 INCL_NON_REF_SPLICE YES_LDAS 0.1268 GT 1.8256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30355 BCR::ABL1 ENSG00000186716.21::ENSG00000097007.20 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary star-fusion TRUE TRUE TRUE 1069 FALSE NA FALSE NA BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23290413:+ chr22:23521891-23660224:+ chr22:23632600:+ ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130854064:+ chr9:133588430-133763062:+ chr9:133729451:+ chr22:23292167,chr22:23292168 chr9:130811620,chr9:130811618 NA NA chr22:23634354,chr22:23634355 chr9:133687007,chr9:133687005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Bcr-Abl_Oligo|3-75|4.5e-43^RhoGEF|503-689|5.7e-42^PH_19|703-781|3.1e-11^PH|722-864|0.00018^IQ_SEC7_PH|724-768|3.7e-06^PH_5|727-865|7.7e-05^Bcr-Abl_Oligo|781-802|0.5^C2|913-960|3.6e-06^PH|923-944|7.4^RhoGAP|1024-1171|3.9e-51 SH2|146-221|1.6e-27^PK_Tyr_Ser-Thr|261-511|2.4e-104^Pkinase|263-510|3e-52^Haspin_kinase|331-407|3.7e-06^Kinase-like|352-502|2.1e-05^F_actin_bind|1045-1149|5.9e-35 ["BCR:Oncogene","BCR:FoundationOne_panel","BCR:ArcherDX_panel"];["ABL1:Oncogene","ABL1:FoundationOne_panel","ABL1:OncomapV4_panel","ABL1:OncocartaV1_panel"];["Mitelman","ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","Klijn_CellLines","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTERCHROMOSOMAL[chr22--chr9] 139 90 139 90 ONLY_REF_SPLICE YES_LDAS 2.5804 GT 1.8892 AG 1.8892 ENST00000359540.7 1-2782 ENST00000372348.9 137-3450 chr22|+|[0]23180961-23182239[0]|[1]23253799-23253980[2]|[0]23260950-23261054[2]|[0]23261355-23261540[2]|[0]23268408-23268515[2]|[0]23271532-23271592[0]|[1]23273081-23273133[2]|[0]23273634-23273774[2]|[0]23283977-23284098[1]|[2]23285033-23285201[2]|[0]23287159-23287278[2]|[0]23288097-23288172[0]|[1]23289517-23289621[0]|[1]23290339-23290413[0]<==>chr9|+|[1]130854064-130854237[0]|[1]130854801-130855096[2]|[0]130862763-130863035[2]|[0]130872129-130872213[0]|[1]130872860-130873037[1]|[2]130874868-130875052[0]|[1]130878415-130878567[0]|[1]130880068-130880157[0]|[1]130880500-130880664[0]|[1]130883969-130885683[2] atggtggacccggtgggcttcgcggaggcgtggaaggcgcagttcccggactcagagcccccgcgcatggagctgcgctcagtgggcgacatcgagcaggagctggagcgctgcaaggcctccattcggcgcctggagcaggaggtgaaccaggagcgcttccgcatgatctacctgcagacgttgctggccaaggaaaagaagagctatgaccggcagcgatggggcttccggcgcgcggcgcaggcccccgacggcgcctccgagccccgagcgtccgcgtcgcgcccgcagccagcgcccgccgacggagccgacccgccgcccgccgaggagcccgaggcccggcccgacggcgagggttctccgggtaaggccaggcccgggaccgcccgcaggcccggggcagccgcgtcgggggaacgggacgaccggggaccccccgccagcgtggcggcgctcaggtccaacttcgagcggatccgcaagggccatggccagcccggggcggacgccgagaagcccttctacgtgaacgtcgagtttcaccacgagcgcggcctggtgaaggtcaacgacaaagaggtgtcggaccgcatcagctccctgggcagccaggccatgcagatggagcgcaaaaagtcccagcacggcgcgggctcgagcgtgggggatgcatccaggcccccttaccggggacgctcctcggagagcagctgcggcgtcgacggcgactacgaggacgccgagttgaacccccgcttcctgaaggacaacctgatcgacgccaatggcggtagcaggcccccttggccgcccctggagtaccagccctaccagagcatctacgtcgggggcatgatggaaggggagggcaagggcccgctcctgcgcagccagagcacctctgagcaggagaagcgccttacctggccccgcaggtcctactccccccggagttttgaggattgcggaggcggctataccccggactgcagctccaatgagaacctcacctccagcgaggaggacttctcctctggccagtccagccgcgtgtccccaagccccaccacctaccgcatgttccgggacaaaagccgctctccctcgcagaactcgcaacagtccttcgacagcagcagtccccccacgccgcagtgccataagcggcaccggcactgcccggttgtcgtgtccgaggccaccatcgtgggcgtccgcaagaccgggcagatctggcccaacgatggcgagggcgccttccatggagacgcagatggctcgttcggaacaccacctggatacggctgcgctgcagaccgggcagaggagcagcgccggcaccaagatgggctgccctacattgatgactcgccctcctcatcgccccacctcagcagcaagggcaggggcagccgggatgcgctggtctcgggagccctggagtccactaaagcgagtgagctggacttggaaaagggcttggagatgagaaaatgggtcctgtcgggaatcctggctagcgaggagacttacctgagccacctggaggcactgctgctgcccatgaagcctttgaaagccgctgccaccacctctcagccggtgctgacgagtcagcagatcgagaccatcttcttcaaagtgcctgagctctacgagatccacaaggagttctatgatgggctcttcccccgcgtgcagcagtggagccaccagcagcgggtgggcgacctcttccagaagctggccagccagctgggtgtgtaccgggccttcgtggacaactacggagttgccatggaaatggctgagaagtgctgtcaggccaatgctcagtttgcagaaatctccgagaacctgagagccagaagcaacaaagatgccaaggatccaacgaccaagaactctctggaaactctgctctacaagcctgtggaccgtgtgacgaggagcacgctggtcctccatgacttgctgaagcacactcctgccagccaccctgaccaccccttgctgcaggacgccctccgcatctcacagaacttcctgtccagcatcaatgaggagatcacaccccgacggcagtccatgacggtgaagaagggagagcaccggcagctgctgaaggacagcttcatggtggagctggtggagggggcccgcaagctgcgccacgtcttcctgttcaccgacctgcttctctgcaccaagctcaagaagcagagcggaggcaaaacgcagcagtatgactgcaaatggtacattccgctcacggatctcagcttccagatggtggatgaactggaggcagtgcccaacatccccctggtgcccgatgaggagctggacgctttgaagatcaagatctcccagatcaagaatgacatccagagagagaagagggcgaacaagggcagcaaggctacggagaggctgaagaagaagctgtcggagcaggagtcactgctgctgcttatgtctcccagcatggccttcagggtgcacagccgcaacggcaagagttacacgttcctgatctcctctgactatgagcgtgcagagtggagggagaacatccgggagcagcagaagaagtgtttcagaagcttctccctgacatccgtggagctgcagatgctgaccaactcgtgtgtgaaactccagactgtccacagcattccgctgaccatcaataaggaagatgatgagtctccggggctctatgggtttctgaatgtcatcgtccactcagccactggatttaagcagagttcaaAAGCCCTTCAGCGGCCAGTAGCATCTGACTTTGAGCCTCAGGGTCTGAGTGAAGCCGCTCGTTGGAACTCCAAGGAAAACCTTCTCGCTGGACCCAGTGAAAATGACCCCAACCTTTTCGTTGCACTGTATGATTTTGTGGCCAGTGGAGATAACACTCTAAGCATAACTAAAGGTGAAAAGCTCCGGGTCTTAGGCTATAATCACAATGGGGAATGGTGTGAAGCCCAAACCAAAAATGGCCAAGGCTGGGTCCCAAGCAACTACATCACGCCAGTCAACAGTCTGGAGAAACACTCCTGGTACCATGGGCCTGTGTCCCGCAATGCCGCTGAGTATCTGCTGAGCAGCGGGATCAATGGCAGCTTCTTGGTGCGTGAGAGTGAGAGCAGTCCTGGCCAGAGGTCCATCTCGCTGAGATACGAAGGGAGGGTGTACCATTACAGGATCAACACTGCTTCTGATGGCAAGCTCTACGTCTCCTCCGAGAGCCGCTTCAACACCCTGGCCGAGTTGGTTCATCATCATTCAACGGTGGCCGACGGGCTCATCACCACGCTCCATTATCCAGCCCCAAAGCGCAACAAGCCCACTGTCTATGGTGTGTCCCCCAACTACGACAAGTGGGAGATGGAACGCACGGACATCACCATGAAGCACAAGCTGGGCGGGGGCCAGTACGGGGAGGTGTACGAGGGCGTGTGGAAGAAATACAGCCTGACGGTGGCCGTGAAGACCTTGAAGGAGGACACCATGGAGGTGGAAGAGTTCTTGAAAGAAGCTGCAGTCATGAAAGAGATCAAACACCCTAACCTGGTGCAGCTCCTTGGGGTCTGCACCCGGGAGCCCCCGTTCTATATCATCACTGAGTTCATGACCTACGGGAACCTCCTGGACTACCTGAGGGAGTGCAACCGGCAGGAGGTGAACGCCGTGGTGCTGCTGTACATGGCCACTCAGATCTCGTCAGCCATGGAGTACCTGGAGAAGAAAAACTTCATCCACAGAGATCTTGCTGCCCGAAACTGCCTGGTAGGGGAGAACCACTTGGTGAAGGTAGCTGATTTTGGCCTGAGCAGGTTGATGACAGGGGACACCTACACAGCCCATGCTGGAGCCAAGTTCCCCATCAAATGGACTGCACCCGAGAGCCTGGCCTACAACAAGTTCTCCATCAAGTCCGACGTCTGGGCATTTGGAGTATTGCTTTGGGAAATTGCTACCTATGGCATGTCCCCTTACCCGGGAATTGACCTGTCCCAGGTGTATGAGCTGCTAGAGAAGGACTACCGCATGGAGCGCCCAGAAGGCTGCCCAGAGAAGGTCTATGAACTCATGCGAGCATGTTGGCAGTGGAATCCCTCTGACCGGCCCTCCTTTGCTGAAATCCACCAAGCCTTTGAAACAATGTTCCAGGAATCCAGTATCTCAGACGAAGTGGAAAAGGAGCTGGGGAAACAAGGCGTCCGTGGGGCTGTGAGTACCTTGCTGCAGGCCCCAGAGCTGCCCACCAAGACGAGGACCTCCAGGAGAGCTGCAGAGCACAGAGACACCACTGACGTGCCTGAGATGCCTCACTCCAAGGGCCAGGGAGAGAGCGATCCTCTGGACCATGAGCCTGCCGTGTCTCCATTGCTCCCTCGAAAAGAGCGAGGTCCCCCGGAGGGCGGCCTGAATGAAGATGAGCGCCTTCTCCCCAAAGACAAAAAGACCAACTTGTTCAGCGCCTTGATCAAGAAGAAGAAGAAGACAGCCCCAACCCCTCCCAAACGCAGCAGCTCCTTCCGGGAGATGGACGGCCAGCCGGAGCGCAGAGGGGCCGGCGAGGAAGAGGGCCGAGACATCAGCAACGGGGCACTGGCTTTCACCCCCTTGGACACAGCTGACCCAGCCAAGTCCCCAAAGCCCAGCAATGGGGCTGGGGTCCCCAATGGAGCCCTCCGGGAGTCCGGGGGCTCAGGCTTCCGGTCTCCCCACCTGTGGAAGAAGTCCAGCACGCTGACCAGCAGCCGCCTAGCCACCGGCGAGGAGGAGGGCGGTGGCAGCTCCAGCAAGCGCTTCCTGCGCTCTTGCTCCGCCTCCTGCGTTCCCCATGGGGCCAAGGACACGGAGTGGAGGTCAGTCACGCTGCCTCGGGACTTGCAGTCCACGGGAAGACAGTTTGACTCGTCCACATTTGGAGGGCACAAAAGTGAGAAGCCGGCTCTGCCTCGGAAGAGGGCAGGGGAGAACAGGTCTGACCAGGTGACCCGAGGCACAGTAACGCCTCCCCCCAGGCTGGTGAAAAAGAATGAGGAAGCTGCTGATGAGGTCTTCAAAGACATCATGGAGTCCAGCCCGGGCTCCAGCCCGCCCAACCTGACTCCAAAACCCCTCCGGCGGCAGGTCACCGTGGCCCCTGCCTCGGGCCTCCCCCACAAGGAAGAAGCTGGAAAGGGCAGTGCCTTAGGGACCCCTGCTGCAGCTGAGCCAGTGACCCCCACCAGCAAAGCAGGCTCAGGTGCACCAGGGGGCACCAGCAAGGGCCCCGCCGAGGAGTCCAGAGTGAGGAGGCACAAGCACTCCTCTGAGTCGCCAGGGAGGGACAAGGGGAAATTGTCCAGGCTCAAACCTGCCCCGCCGCCCCCACCAGCAGCCTCTGCAGGGAAGGCTGGAGGAAAGCCCTCGCAGAGCCCGAGCCAGGAGGCGGCCGGGGAGGCAGTCCTGGGCGCAAAGACAAAAGCCACGAGTCTGGTTGATGCTGTGAACAGTGACGCTGCCAAGCCCAGCCAGCCGGGAGAGGGCCTCAAAAAGCCCGTGCTCCCGGCCACTCCAAAGCCACAGTCCGCCAAGCCGTCGGGGACCCCCATCAGCCCAGCCCCCGTTCCCTCCACGTTGCCATCAGCATCCTCGGCCCTGGCAGGGGACCAGCCGTCTTCCACCGCCTTCATCCCTCTCATATCAACCCGAGTGTCTCTTCGGAAAACCCGCCAGCCTCCAGAGCGGATCGCCAGCGGCGCCATCACCAAGGGCGTGGTCCTGGACAGCACCGAGGCGCTGTGCCTCGCCATCTCTAGGAACTCCGAGCAGATGGCCAGCCACAGCGCAGTGCTGGAGGCCGGCAAAAACCTCTACACGTTCTGCGTGAGCTATGTGGATTCCATCCAGCAAATGAGGAACAAGTTTGCCTTCCGAGAGGCCATCAACAAACTGGAGAATAATCTCCGGGAGCTTCAGATCTGCCCGGCGACAGCAGGCAGTGGTCCAGCGGCCACTCAGGACTTCAGCAAGCTCCTCAGTTCGGTGAAGGAAATCAGTGACATAGTGCAGAGGTAG MVDPVGFAEAWKAQFPDSEPPRMELRSVGDIEQELERCKASIRRLEQEVNQERFRMIYLQTLLAKEKKSYDRQRWGFRRAAQAPDGASEPRASASRPQPAPADGADPPPAEEPEARPDGEGSPGKARPGTARRPGAAASGERDDRGPPASVAALRSNFERIRKGHGQPGADAEKPFYVNVEFHHERGLVKVNDKEVSDRISSLGSQAMQMERKKSQHGAGSSVGDASRPPYRGRSSESSCGVDGDYEDAELNPRFLKDNLIDANGGSRPPWPPLEYQPYQSIYVGGMMEGEGKGPLLRSQSTSEQEKRLTWPRRSYSPRSFEDCGGGYTPDCSSNENLTSSEEDFSSGQSSRVSPSPTTYRMFRDKSRSPSQNSQQSFDSSSPPTPQCHKRHRHCPVVVSEATIVGVRKTGQIWPNDGEGAFHGDADGSFGTPPGYGCAADRAEEQRRHQDGLPYIDDSPSSSPHLSSKGRGSRDALVSGALESTKASELDLEKGLEMRKWVLSGILASEETYLSHLEALLLPMKPLKAAATTSQPVLTSQQIETIFFKVPELYEIHKEFYDGLFPRVQQWSHQQRVGDLFQKLASQLGVYRAFVDNYGVAMEMAEKCCQANAQFAEISENLRARSNKDAKDPTTKNSLETLLYKPVDRVTRSTLVLHDLLKHTPASHPDHPLLQDALRISQNFLSSINEEITPRRQSMTVKKGEHRQLLKDSFMVELVEGARKLRHVFLFTDLLLCTKLKKQSGGKTQQYDCKWYIPLTDLSFQMVDELEAVPNIPLVPDEELDALKIKISQIKNDIQREKRANKGSKATERLKKKLSEQESLLLLMSPSMAFRVHSRNGKSYTFLISSDYERAEWRENIREQQKKCFRSFSLTSVELQMLTNSCVKLQTVHSIPLTINKEDDESPGLYGFLNVIVHSATGFKQSSKALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKQGVRGAVSTLLQAPELPTKTRTSRRAAEHRDTTDVPEMPHSKGQGESDPLDHEPAVSPLLPRKERGPPEGGLNEDERLLPKDKKTNLFSALIKKKKKTAPTPPKRSSSFREMDGQPERRGAGEEEGRDISNGALAFTPLDTADPAKSPKPSNGAGVPNGALRESGGSGFRSPHLWKKSSTLTSSRLATGEEEGGGSSSKRFLRSCSASCVPHGAKDTEWRSVTLPRDLQSTGRQFDSSTFGGHKSEKPALPRKRAGENRSDQVTRGTVTPPPRLVKKNEEAADEVFKDIMESSPGSSPPNLTPKPLRRQVTVAPASGLPHKEEAGKGSALGTPAAAEPVTPTSKAGSGAPGGTSKGPAEESRVRRHKHSSESPGRDKGKLSRLKPAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGAKTKATSLVDAVNSDAAKPSQPGEGLKKPVLPATPKPQSAKPSGTPISPAPVPSTLPSASSALAGDQPSSTAFIPLISTRVSLRKTRQPPERIASGAITKGVVLDSTEALCLAISRNSEQMASHSAVLEAGKNLYTFCVSYVDSIQQMRNKFAFREAINKLENNLRELQICPATAGSGPAATQDFSKLLSSVKEISDIVQR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Breakpoint cluster region protein Atypical BCR P11274 TRUE TRUE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 23524426,23632600,23632600,23524426 FALSE,TRUE,TRUE,FALSE 133729451,133729451,133729451,133729451 TRUE,TRUE,TRUE,TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense 30356 ABL1::BCR ENSG00000097007.20::ENSG00000186716.21 LAMA84 SRR8615684 SRR8652091 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (blast_phase_chronic_myeloid_leukaemia) primary star-fusion TRUE TRUE TRUE 1070 FALSE NA FALSE NA ABL1 ENSG00000097007.20 protein_coding + + chr9:130713043-130887675:+ chr9:130714455:+ chr9:133588430-133763062:+ chr9:133589842:+ BCR ENSG00000186716.21 protein_coding + + chr22:23179704-23318037:+ chr22:23292541:+ chr22:23521891-23660224:+ chr22:23634728:+ chr9:130811616,chr9:130811617 chr22:23292164,chr22:23292162 NA NA chr9:133687003,chr9:133687004 chr22:23634351,chr22:23634349 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SH3_2|85-136|5.4e-12^SH3_1|86-132|3.3e-16^SH3_9|87-136|1.7e-10^SH3_6|101-131|6.4e-05 none ["ABL1:Oncogene","ABL1:FoundationOne_panel","ABL1:OncomapV4_panel","ABL1:OncocartaV1_panel"];["BCR:Oncogene","BCR:FoundationOne_panel","BCR:ArcherDX_panel"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","Klijn_CellLines","chimerdb_pubmed","chimerdb_omim","DEEPEST2019","ChimerPub","TumorFusionsNAR2018"];INTERCHROMOSOMAL[chr9--chr22] 44 35 44 35 ONLY_REF_SPLICE YES_LDAS 0.8902 GT 1.7465 AG 1.8892 ENST00000372348.9 1-136 ENST00000305877.13 2783-3816 chr9|+|[0]130714320-130714455[0]<==>chr22|+|[1]23292541-23292638[2]|[0]23295024-23295155[2]|[0]23309424-23309483[2]|[0]23310324-23310433[1]|[2]23311697-23311836[0]|[1]23312887-23313021[0]|[1]23313968-23314073[1]|[2]23314552-23314714[2]|[0]23315433-23315522[2] atggggcagcagcctggaaaagtacttggggaccaaagaaggccaagcttgcctgccctgcattttatcaaaggagcagggaagaaggaatcatcgaggcatgggggtccacactgcaatgtttttgtggaacatgATCTGTACTGCACCCTGGAGGTGGATTCCTTTGGGTATTTTGTGAATAAAGCAAAGACGCGCGTCTACAGGGACACAGCTGAGCCAAACTGGAACGAGGAATTTGAGATAGAGCTGGAGGGCTCCCAGACCCTGAGGATACTGTGCTATGAAAAGTGTTACAACAAGACGAAGATCCCCAAGGAGGACGGCGAGAGCACGGACAGACTCATGGGGAAGGGCCAGGTCCAGCTGGACCCGCAGGCCCTGCAGGACAGAGACTGGCAGCGCACCGTCATCGCCATGAATGGGATCGAAGTAAAGCTCTCGGTCAAGTTCAACAGCAGGGAGTTCAGCTTGAAGAGGATGCCGTCCCGAAAACAGACAGGGGTCTTCGGAGTCAAGATTGCTGTGGTCACCAAGAGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAGGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTCGACGTCAATAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCAGGCACGCTGAAGCTGTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTTCGCAGAGGGCATCGCTCTTTCAGACCCGGTTGCAAAGGAGAGCTGCATGCTCAACCTGCTGCTGTCCCTGCCGGAGGCCAACCTGCTCACCTTCCTTTTCCTTCTGGACCACCTGAAAAGGGTGGCAGAGAAGGAGGCAGTCAATAAGATGTCCCTGCACAACCTCGCCACGGTCTTTGGCCCCACGCTGCTCCGGCCCTCCGAGAAGGAGAGCAAGCTCCCTGCCAACCCCAGCCAGCCTATCACCATGACTGACAGCTGGTCCTTGGAGGTCATGTCCCAGGTCCAGGTGCTGCTGTACTTCCTGCAGCTGGAGGCCATCCCTGCCCCGGACAGCAAGAGACAGAGCATCCTGTTCTCCACCGAAGTCTAA MGQQPGKVLGDQRRPSLPALHFIKGAGKKESSRHGGPHCNVFVEHDLYCTLEVDSFGYFVNKAKTRVYRDTAEPNWNEEFEIELEGSQTLRILCYEKCYNKTKIPKEDGESTDRLMGKGQVQLDPQALQDRDWQRTVIAMNGIEVKLSVKFNSREFSLKRMPSRKQTGVFGVKIAVVTKRERSKVPYIVRQCVEEIERRGMEEVGIYRVSGVATDIQALKAAFDVNNKDVSVMMSEMDVNAIAGTLKLYFRELPEPLFTDEFYPNFAEGIALSDPVAKESCMLNLLLSLPEANLLTFLFLLDHLKRVAEKEAVNKMSLHNLATVFGPTLLRPSEKESKLPANPSQPITMTDSWSLEVMSQVQVLLYFLQLEAIPAPDSKRQSILFSTEV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Tyrosine-protein kinase ABL1 TK Abl P00519 TRUE TRUE Breakpoint cluster region protein Atypical BCR P11274 TRUE unknown unknown TRUE Acute Myeloid Leukemia,Acute Myeloid Leukemia,Acute Myeloid Leukemia HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE,HAEMATOPOIETIC_AND_LYMPHOID_TISSUE exact 133589842,133589842,133589842|133589842 TRUE,TRUE,TRUE|TRUE 23595986,23634728,23634728|23651611 FALSE,TRUE,TRUE|FALSE PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE v-abl Abelson murine leukemia viral oncogene homolog 1 1 Yes CML, ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation, missense TRUE breakpoint cluster region 1 CML, ALL, AML leukaemia_lymphoma fusion translocation 30372 RECK::ZNF780B ENSG00000122707.12::ENSG00000128000.17 PANC1 SRR8615685 SRR8670733 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1072 FALSE NA FALSE NA RECK ENSG00000122707.12 protein_coding + + chr9:36036913-36124455:+ chr9:36037098:+ chr9:36036910-36124452:+ chr9:36037095:+ ZNF780B ENSG00000128000.17 protein_coding - - chr19:40028260-40056231:- chr19:40036626:- chr19:40534167-40562138:- chr19:40542533:- chr9:36049660,chr9:36049657,chr9:36049658 chr19:40046956,chr19:40046959,chr19:40047094 NA NA chr9:36049657,chr9:36049654,chr9:36049655 chr19:40552863,chr19:40552866,chr19:40553001 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none zf-C2H2-PARTIAL|~233-243|6.9e-08^zf-C2H2_4-PARTIAL|~233-243|1.5e-05^zf-C2H2_6-PARTIAL|~233-240|7.5e-05^zf-C2H2_jaz-PARTIAL|~233-241|0.0014^zf_UBZ-PARTIAL|~233-239|0.005^zf-C2H2_3rep-PARTIAL|~233-241|0.0068^C1_4-PARTIAL|~233-244|0.011^C1_4-PARTIAL|~233-272|0.0011^Zn_Tnp_IS1595-PARTIAL|~233-256|0.0013^zf-met-PARTIAL|~233-241|0.014^zf-C2H2_11-PARTIAL|~233-242|0.00046^zf-H2C2_2|236-260|4.1e-09^zf-C2H2_3rep|247-356|0.1^zf-AN1|247-258|0.025^zf-C2H2|249-271|3.9e-10^zf-C2H2_4|249-271|6.3e-06^zf-C2H2_6|249-267|5.7e-06^zf-C2H2_jaz|249-268|1.6e-05^Zn-ribbon_8|249-260|0.0093^zf_UBZ|249-268|0.0072^Zn_Tnp_IS1595|249-284|0.0038^zf-met|249-268|0.00016^C1_4|250-299|0.0053^zf-C2H2_11|250-267|0.52^XPA_N|250-261|0.013^Raffinose_syn|251-292|0.05^zf-H2C2_2|263-288|5.4e-10^zf-AN1|275-286|0.029^zf-C2H2|277-299|2.8e-09^zf-C2H2_4|277-299|6.7e-06^zf-C2H2_6|277-299|3.5e-06^zf-C2H2_jaz|277-297|0.0031^Zn-ribbon_8|277-311|5.6e-05^zf_UBZ|277-286|0.03^zf-met|277-297|0.001^zf-C2H2_11|277-286|0.055^C1_4|278-314|0.17^XPA_N|278-286|0.025^MRP-S23|280-304|0.067^zf-H2C2_2|291-315|2.2e-09^RNA_pol_Rpb2_7|295-349|0.0041^zf-AN1|303-314|0.25^zf-C2H2|305-327|0.0021^zf-C2H2_4|305-327|0.0097^zf-C2H2_6|305-323|0.11^zf-C2H2_jaz|305-325|1.6^zf_UBZ|305-323|0.76^Zn_Tnp_IS1595|305-340|0.01^zf-met|305-325|0.37^zf-C2H2_11|306-326|0.61^C1_4|307-355|0.12^XPA_N|307-314|1.4^zf-H2C2_2|320-343|7.1e-11^zf-AN1|323-342|0.015^zf-C2H2_jaz|332-342|0.022^zf-C2H2|333-355|3.3e-06^zf-C2H2_4|333-355|9.5e-05^zf-C2H2_6|333-357|0.00057^Zn-ribbon_8|333-368|0.0025^zf_UBZ|333-343|0.35^zf-met|333-343|0.7^C1_4|334-383|0.0072^zf-C2H2_11|334-354|0.068^XPA_N|334-343|0.1^MRP-S23|342-360|7^zf-H2C2_2|348-371|1.7e-11^zf-C2H2_3rep|356-381|0.00071^zf-AN1|359-370|0.02^zf-C2H2_jaz|360-381|0.014^zf-C2H2|361-383|8.8e-07^zf-C2H2_4|361-383|1.2e-05^zf-C2H2_6|361-380|0.00024^Zn-ribbon_8|361-399|0.0015^zf_UBZ|361-377|0.058^Zn_Tnp_IS1595|361-396|0.0011^zf-met|361-381|0.73^zf-C2H2_11|362-382|0.0011^XPA_N|362-370|0.026^C1_4|363-412|0.0093^zf-H2C2_2|376-400|1.5e-12^zf-C2H2_3rep|385-408|0.25^zf-AN1|387-398|0.013^zf-C2H2_jaz|388-408|1.5e-05^zf-C2H2|389-411|4.9e-10^zf-C2H2_4|389-411|5.9e-06^zf-C2H2_6|389-408|6e-06^Zn-ribbon_8|389-424|7.7e-05^zf_UBZ|389-400|0.026^zf-C2H2_3rep|389-493|0.016^Zn_Tnp_IS1595|389-424|0.012^zf-met|389-408|2.5e-05^C1_4|390-440|0.14^zf-C2H2_11|390-398|0.62^XPA_N|390-401|0.013^MRP-S23|393-416|2.3^zf-H2C2_2|403-428|7.3e-08^zf-AN1|413-426|0.028^zf-C2H2|417-439|2.5e-08^zf-C2H2_4|417-439|1.7e-05^zf-C2H2_6|417-439|8.3e-07^zf-C2H2_jaz|417-437|0.00032^Zn-ribbon_8|417-451|0.00014^zf_UBZ|417-426|0.081^zf-met|417-437|0.00055^C1_4|418-456|0.32^zf-C2H2_11|418-426|1.1^XPA_N|418-426|0.041^MRP-S23|421-444|0.35^zf-H2C2_2|431-455|2.2e-09^RNA_pol_Rpb2_7|439-487|0.051^zf-AN1|443-454|0.25^zf-C2H2|445-467|0.0031^zf-C2H2_4|445-467|0.0064^zf-C2H2_6|445-463|0.78^zf-C2H2_jaz|445-464|2.2^zf_UBZ|445-454|1.3^Zn_Tnp_IS1595|445-480|0.021^zf-met|445-465|0.16^zf-C2H2_11|446-466|0.27^C1_4|447-495|0.3^XPA_N|447-454|1.4^zf-H2C2_2|460-483|1.3e-09^zf-AN1|463-482|0.0089^zf-C2H2_jaz|472-491|0.015^Zn_Tnp_IS1595|472-508|0.0034^zf-C2H2|473-495|2.2e-07^zf-C2H2_4|473-495|4.4e-05^zf-C2H2_6|473-492|4.1e-05^Zn-ribbon_8|473-489|0.0029^zf_UBZ|473-489|0.022^zf-met|473-492|0.82^zf-C2H2_11|474-494|0.0086^XPA_N|474-482|0.026^MRP-S23|477-500|3.4^zf-H2C2_2|488-512|5.7e-12^zf-C2H2_3rep|496-520|0.44^zf-AN1|499-510|0.022^zf-C2H2_jaz|500-520|0.00093^zf-C2H2|501-523|2.5e-08^zf-C2H2_4|501-523|0.00013^zf-C2H2_6|501-519|0.00077^Zn-ribbon_8|501-537|2.9e-05^zf_UBZ|501-510|0.17^zf-met|501-520|0.0045^zf-C2H2_3rep|502-604|5.8^C1_4|502-552|0.00031^zf-C2H2_11|502-510|1.1^XPA_N|502-510|0.071^Raffinose_syn|503-547|0.027^MRP-S23|505-528|0.69^zf-H2C2_2|515-538|3.1e-11^Zn_Tnp_IS1595|522-536|0.055^zf-AN1|527-538|0.06^zf-C2H2|529-551|5.6e-06^zf-C2H2_4|529-551|5e-05^zf-C2H2_6|529-539|0.0007^zf-C2H2_jaz|529-550|0.0017^Zn-ribbon_8|529-564|0.0094^zf_UBZ|529-548|0.0027^zf-met|529-550|0.26^Zn_Tnp_IS1595|530-564|0.033^zf-C2H2_11|530-547|0.096^XPA_N|530-538|0.022^zf-H2C2_2|544-564|3.4e-10^zf-AN1|555-566|0.089^zf-C2H2_jaz|556-576|0.0011^zf-C2H2|557-579|2.9e-08^zf-C2H2_4|557-579|0.00021^zf-C2H2_6|557-579|6.8e-06^Zn-ribbon_8|557-592|0.014^zf_UBZ|557-566|0.1^zf-met|557-575|0.0052^C1_4|558-608|0.0095^zf-C2H2_11|558-578|0.42^XPA_N|558-566|0.19^Raffinose_syn|559-604|0.0036^zf-H2C2_2|571-594|2.3e-10^Zn_Tnp_IS1595|575-592|0.029^zf-AN1|583-594|0.019^zf-C2H2_jaz|584-604|0.021^zf-C2H2|585-607|2e-06^zf-C2H2_4|585-607|0.001^zf-C2H2_6|585-595|0.013^Zn-ribbon_8|585-620|0.00048^zf_UBZ|585-597|0.052^zf-met|585-595|1.7^zf-C2H2_11|586-603|0.078^XPA_N|586-594|0.032^C1_4|587-636|0.14^zf-H2C2_2|599-623|2.1e-11^zf-C2H2_3rep|608-633|0.06^zf-AN1|611-631|0.033^zf-C2H2_jaz|612-631|0.025^zf-C2H2|613-635|2.9e-06^zf-C2H2_4|613-635|7.1e-05^zf-C2H2_6|613-632|0.00039^Zn-ribbon_8|613-653|0.0012^zf_UBZ|613-630|0.0025^Zn_Tnp_IS1595|613-648|0.0035^zf-met|613-629|1.9^zf-C2H2_11|614-634|0.013^XPA_N|614-622|0.026^C1_4|615-664|0.05^zf-H2C2_2|629-652|1.3e-10^zf-C2H2_3rep|631-661|0.025^zf-AN1|639-650|0.0078^zf-C2H2|641-663|6.4e-09^zf-C2H2_4|641-663|5.7e-06^zf-C2H2_6|641-659|2.7e-05^zf-C2H2_jaz|641-660|5.4e-05^Zn-ribbon_8|641-680|4.1e-05^zf_UBZ|641-651|0.029^Zn_Tnp_IS1595|641-676|0.011^zf-met|641-660|0.00093^zf-C2H2_11|641-650|0.2^zf-C2H2_3rep|642-744|0.021^C1_4|642-679|0.014^XPA_N|642-650|0.022^Raffinose_syn|643-681|0.37^MRP-S23|644-668|0.89^zf-H2C2_2|655-680|2.4e-09^zf-AN1|667-678|0.065^zf-C2H2|669-691|9.4e-10^zf-C2H2_4|669-691|1.1e-06^zf-C2H2_6|669-693|1.9e-07^zf-C2H2_jaz|669-691|2.1e-05^Zn-ribbon_8|669-704|0.00038^zf_UBZ|669-679|0.048^zf-met|669-689|0.00068^C1_4|670-706|0.14^zf-C2H2_11|670-679|0.51^XPA_N|670-679|0.027^MRP-S23|673-696|0.14^zf-H2C2_2|683-707|6.6e-08^RNA_pol_Rpb2_7|687-739|3.3^zf-AN1|694-706|0.029^zf-C2H2|697-719|1.3e-06^zf-C2H2_4|697-719|0.00043^zf-C2H2_6|697-717|0.0002^zf-C2H2_jaz|697-717|0.00079^Zn-ribbon_8|697-732|0.054^zf_UBZ|697-715|0.0033^Zn_Tnp_IS1595|697-732|0.0036^zf-met|697-717|0.002^C1_4|699-748|0.018^zf-C2H2_11|699-717|7.8^XPA_N|699-706|0.23^zf-H2C2_2|712-734|1.9e-11^zf-AN1|723-734|0.023^zf-C2H2_jaz|724-735|0.04^zf-C2H2|725-747|2e-06^zf-C2H2_4|725-747|0.00057^zf-C2H2_6|725-743|0.00014^Zn-ribbon_8|725-762|0.0015^zf_UBZ|725-744|0.029^zf-met|725-743|1.6^zf-C2H2_11|726-734|0.71^XPA_N|726-735|0.02^zf-H2C2_2|740-764|3.9e-12^zf-C2H2_3rep|748-763|2.4^Zn_Tnp_IS1595|750-760|0.067^zf-AN1|751-762|0.015^zf-C2H2|753-768|2.1e-05^zf-C2H2_4|753-768|0.0066^zf-C2H2_6|753-768|8.4e-05^zf-C2H2_jaz|753-764|0.023^Zn-ribbon_8|753-789|0.00016^zf_UBZ|753-762|0.12^Zn_Tnp_IS1595|753-788|0.096^zf-met|753-768|0.56^zf-C2H2_11|753-762|0.23^C1_4|754-802|0.00095^XPA_N|754-762|0.019^Raffinose_syn|755-796|0.024^MRP-S23|756-780|1.3^zf-H2C2_2|774-790|1.4e-08^zf-C2H2_3rep|774-800|0.32^zf-AN1|779-790|0.055^zf-C2H2|781-801|3.3e-05^zf-C2H2_4|781-801|0.0033^zf-C2H2_6|781-790|0.0011^zf-C2H2_jaz|781-799|0.042^Zn-ribbon_8|781-792|0.0047^zf_UBZ|781-795|0.012^zf-met|781-790|1.9^zf-C2H2_11|782-799|0.16^XPA_N|782-790|0.022 INTERCHROMOSOMAL[chr9--chr19] 8 4 8 4 ONLY_REF_SPLICE YES_LDAS 0.108 GT 1.6895 AG 1.7819 ENST00000377966.4 1-100 ENST00000434248.6 233-2502 chr9|+|[0]36036999-36037098[0]<==>chr19|-|[2]40034357-40036626[1] atggcgaccgtccgggcctctctgcgaggtgcgctgctccttctgctggccgtggcgggggtcgcggaggtggcagggggcctggctccgggcagtgcggATTTGGAGTCAAAATATGGACCTGAGAAAATATCTCCAGAAAATGATATTTTTGAAATAAATTTACCCAAACATGTTATAAAGCAAATAAGTAAAACACTTGGCCTCGAGGCCTTTTATTTTAGAAATGACTCAGAATATAGAAGTAGATTTGAGGGACGACAGGGACATCAAGAAGGATATATCAACCAGAAGATCATCAGCTATGAAGAAATGCCTGCTTATACTCATGCTTCTCCTATTCATAATACACATAAACCATATGAATGTAAGGAATGTGGGAAATACTTTAGTTGTGGTTCAAATCTTATTCAGCATCAGAGTATTCATACTGGAGAGAAACCCTATAAATGCAAAGAATGTGGGAAAGCCTTTCAACTTCACATACAACTTACTCGACATCAGAAATTTCATACTGGTGAGAAAACTTTTGAATGTAAGGAATGTGGAAAAGCCTTTAATCTTCCCACCCAGCTTAATCGCCATAAGAACATTCACACAGTTAAGAAACTGTTTGAATGTAAGGAATGTGGGAAGTCTTTTAATCGTAGCTCAAACCTTACTCAGCATCAAAGTATTCATGCTGGTGTAAAACCATATCAATGTAAGGAGTGTGGGAAAGCCTTTAATCGTGGTTCAAATCTTATTCAGCATCAAAAAATTCATTCCAATGAGAAACCCTTTGTATGTAGGGAATGTGAGATGGCCTTTCGATATCATTACCAACTCATTGAACATTGCCGAATTCATACTGGCGAGAAACCCTTTGAATGTAAAGAATGCAGAAAGGCCTTTACTCTTCTGACAAAGCTTGTTCGACATCAGAAGATTCATATGGGTGAGAAGCCCTTTGAATGCAGGGAATGCGGGAAGGCCTTTAGTCTCCTCAATCAGCTTAATCGCCATAAGAATATTCACACAGGTGAAAAACCATTTGAATGTAAAGAATGTGGGAAGTCCTTTAATCGTAGTTCAAACCTTATTCAACACCAGAGTATTCATGCTGATGTAAAACCATATGAATGTAAGGAGTGTGGGAAAGGCTTTAATCGTGGTGCAAATCTTATTCAGCATCAAAAAATTCATTCCAATGAGAAACCCTTTGTATGTAGGGAATGTGAGATGGCCTTTCGATATCATTACCAACTTATTCAACATTGCCAAATTCATACTGGTGGGAAACCCTTTGAATGTAAAGAATGTGGAAAGGCCTTTAGTCTTCTGACACAGCTTGCTCGACATAAGAACATTCATACTGGTGAGAAACCATTTGAATGTAAAGACTGTGGGAAGGCCTTCAATCGTGGCTCGAACCTTGTTCAACATCAGAGTATTCACACTGGTGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTCACCTACAACTTTCTCAACATGAGAAAACTCATACAGGTGAGAAACCCTTTGAATGTAAGGAATGTGGGAAATTCTTTCGTCGTGGTTCAAATCTTAATCAACATCGAAGTATTCATACCGGAAAGAAACCCTTTGAATGTAAGGAATGTGGGAAAGCCTTTCGACTTCATATGCACCTTATTCGACATCAGAAATTTCATACTGGTGAGAAGCCCTTTGAATGTAAGGAATGTGGCAAGGCCTTCAGTCTTCACACCCAGCTTAATCACCATAAGAACATTCACACAGGTGAGAAGCCATTTAAATGTAAAGAATGTGGGAAGTCCTTTAATCGTGTCTCAAACCTTGTTCAACATCAGAGTATTCATGCTGGTGTAAAACCATATGAATGTAAGGAGTGTGGGAAAGGCTTTAGTCGTGTTTCAAACCTTATTCAGCATCAGAAAACTCATTCCAGTGCGAAACCCTTTGTATGTAAGGAGTGTAGGAAGACCTTTAGATATCATTACCAGCTTACTGAACATTACCGAATTCATACTGGTGAGAAACCCTTTGAATGTAAAGAATGCGGAAAGGCCTTTGGTCTTCTGACACAGCTTGCTCAACATCAGATCATTCATACTGGTGAGAAGCCATTTAAATGTAAGGAGTGTGGGAAGGCCTTTAATCGTGGCTCAAACCTTGTTCAACCTCAGAGTATTCATACTGGTGAGAAACCCTATGAATGTAAGGAGTGTGGGAAGGCTTTTAGACTTCACCTACAACTTTCTCTGCATCAAAAACTTGTACAGGTGAGAAACCCTTTGAATGTAAGAAATGTGGGACAGCCTTCAGACATCAGTAGCAACTTACTGAACATCAGAAAATTCATACTTGGGTGA MATVRASLRGALLLLLAVAGVAEVAGGLAPGSADLESKYGPEKISPENDIFEINLPKHVIKQISKTLGLEAFYFRNDSEYRSRFEGRQGHQEGYINQKIISYEEMPAYTHASPIHNTHKPYECKECGKYFSCGSNLIQHQSIHTGEKPYKCKECGKAFQLHIQLTRHQKFHTGEKTFECKECGKAFNLPTQLNRHKNIHTVKKLFECKECGKSFNRSSNLTQHQSIHAGVKPYQCKECGKAFNRGSNLIQHQKIHSNEKPFVCRECEMAFRYHYQLIEHCRIHTGEKPFECKECRKAFTLLTKLVRHQKIHMGEKPFECRECGKAFSLLNQLNRHKNIHTGEKPFECKECGKSFNRSSNLIQHQSIHADVKPYECKECGKGFNRGANLIQHQKIHSNEKPFVCRECEMAFRYHYQLIQHCQIHTGGKPFECKECGKAFSLLTQLARHKNIHTGEKPFECKDCGKAFNRGSNLVQHQSIHTGEKPYECKECGKAFRLHLQLSQHEKTHTGEKPFECKECGKFFRRGSNLNQHRSIHTGKKPFECKECGKAFRLHMHLIRHQKFHTGEKPFECKECGKAFSLHTQLNHHKNIHTGEKPFKCKECGKSFNRVSNLVQHQSIHAGVKPYECKECGKGFSRVSNLIQHQKTHSSAKPFVCKECRKTFRYHYQLTEHYRIHTGEKPFECKECGKAFGLLTQLAQHQIIHTGEKPFKCKECGKAFNRGSNLVQPQSIHTGEKPYECKECGKAFRLHLQLSLHQKLVQVRNPLNVRNVGQPSDISSNLLNIRKFILG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30376 KMT2A::AFF1 ENSG00000118058.25::ENSG00000172493.23 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1077 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87089984:+ chr4:87856154-88062191:+ chr4:88011136:+ chr11:118482961,chr11:118482962,chr11:118482961 chr4:87087934,chr4:87087932,chr4:87087932 NA NA chr11:118353676,chr11:118353677,chr11:118353676 chr4:88009086,chr4:88009084,chr4:88009084 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.096^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1657|0.0086^PHD|1602-1657|8.6e-10^PHD_2|1616-1632|0.033^Bromodomain|1734-1775|1e-05^zf-HC5HC2H_2|1905-2008|1.7e-12^zf-HC5HC2H|1933-2011|9e-14^PHD|1966-1995|0.95^FYRN|2052-2107|3.6e-20^FYRC|3702-3781|8.3e-24^SET|3873-3978|6.7e-31 AFF4_CHD-PARTIAL|~1084-1210|6.9e-135^AF-4|1086-1127|0.7 ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["AFF1:Oncogene"];["Mitelman","ChimerKB","ChimerPub","DepMap2023","Cosmic","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr4] 7 11 7 10.33 ONLY_REF_SPLICE YES_LDAS 0.1763 GT 1.1033 AG 1.8892 ENST00000710560.1 1-4185 ENST00000544085.6 1084-3636 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]<==>chr4|+|[0]87089984-87090070[2]|[0]87091793-87091829[0]|[1]87094915-87094969[1]|[2]87105628-87105682[2]|[0]87105808-87105845[1]|[2]87108159-87108315[2]|[0]87114367-87115299[2]|[0]87125037-87125143[1]|[2]87126099-87126336[2]|[0]87127026-87127117[1]|[2]87127643-87127703[2]|[0]87131083-87131219[1]|[2]87131793-87131864[1]|[2]87132271-87132408[1]|[2]87134471-87134694[0]|[1]87135580-87135701[2] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaagGAAATGACCCATTCATGGCCGCCTCCTTTGACAGCAATACATACGCCTAGTACAGCTGAGCCATCCAAGTTTCCTTTCCCTACAAAGGACTCTCAGCATGTCAGTTCTGTAACCCAAAACCAAAAACAATATGATACATCTTCAAAAACTCACTCAAATTCTCAGCAAGGAACGTCATCCATGCTCGAAGACGACCTTCAGCTCAGTGACAGTGAGGACAGTGACAGTGAACAAACCCCAGAGAAGCCTCCCTCCTCATCTGCACCTCCAAGTGCTCCACAGTCCCTTCCAGAACCAGTGGCATCAGCACATTCCAGCAGTGCAGAGTCAGAAAGCACCAGTGACTCAGACAGTTCCTCAGACTCAGAGAGCGAGAGCAGTTCAAGTGACAGCGAAGAAAATGAGCCCCTAGAAACCCCAGCTCCGGAGCCTGAGCCTCCAACAACAAACAAATGGCAGCTGGACAACTGGCTGACCAAAGTCAGCCAGCCAGCTGCGCCACCAGAGGGCCCCAGGAGCACAGAGCCCCCACGGCGGCACCCAGAGAGTAAGGGCAGCAGCGACAGTGCCACGAGTCAGGAGCATTCTGAATCCAAAGATCCTCCCCCTAAAAGCTCCAGCAAAGCCCCCCGGGCCCCACCCGAAGCCCCCCACCCCGGAAAGAGGAGCTGTCAGAAGTCTCCGGCACAGCAGGAGCCCCCACAAAGGCAAACCGTTGGAACCAAACAACCCAAAAAACCTGTCAAGGCCTCTGCCCGGGCAGGTTCACGGACCAGCCTGCAGGGGGAAAGGGAGCCAGGGCTTCTTCCCTATGGCTCCCGAGACCAGACTTCCAAAGACAAGCCCAAGGTGAAGACGAAAGGACGGCCCCGGGCCGCAGCAAGCAACGAACCCAAGCCAGCAGTGCCCCCCTCCAGTGAGAAGAAGAAGCACAAGAGCTCCCTCCCTGCCCCCTCTAAGGCTCTCTCAGGCCCAGAACCCGCGAAGGACAATGTGGAGGACAGGACCCCTGAGCACTTTGCTCTTGTTCCCCTGACTGAGAGCCAGGGCCCACCCCACAGTGGCAGCGGCAGCAGGACTAGTGGCTGCCGCCAAGCCGTGGTGGTCCAGGAGGACAGCCGCAAAGACAGACTCCCATTGCCTTTGAGAGACACCAAGCTGCTCTCACCGCTCAGGGACACTCCTCCCCCACAAAGCTTGATGGTGAAGATCACCCTAGACCTGCTCTCTCGGATACCCCAGCCTCCCGGGAAGGGGAGCCGCCAGAGGAAAGCAGAAGATAAACAGCCGCCCGCAGGGAAGAAGCACAGCTCTGAGAAGAGGAGCTCAGACAGCTCAAGCAAGTTGGCCAAAAAGAGAAAGGGTGAAGCAGAAAGAGACTGTGATAACAAGAAAATCAGACTGGAGAAGGAAATCAAATCACAGTCATCTTCATCTTCATCCTCCCACAAAGAATCTTCTAAAACAAAGCCCTCCAGGCCCTCCTCACAGTCCTCAAAGAAGGAAATGCTCCCCCCGCCACCCGTGTCCTCGTCCTCCCAGAAGCCAGCCAAGCCTGCACTTAAGAGGTCAAGGCGGGAAGCAGACACCTGTGGCCAGGACCCTCCCAAAAGTGCCAGCAGTACCAAGAGCAACCACAAAGACTCTTCCATTCCCAAGCAGAGAAGAGTAGAGGGGAAGGGCTCCAGAAGCTCCTCGGAGCACAAGGGTTCTTCCGGAGATACTGCAAATCCTTTTCCAGTGCCTTCTTTGCCAAATGGTAACTCTAAACCAGGGAAGCCTCAAGTGAAGTTTGACAAACAACAAGCAGACCTTCACATGAGGGAGGCAAAAAAGATGAAGCAGAAAGCAGAGTTAATGACGGACAGGGTTGGAAAGGCTTTTAAGTACCTGGAAGCCGTCTTGTCCTTCATTGAGTGCGGAATTGCCACAGAGTCTGAAAGCCAGTCATCCAAGTCAGCTTACTCTGTCTACTCAGAAACTGTAGATCTCATTAAATTCATAATGTCATTAAAATCCTTCTCAGATGCCACAGCGCCAACACAAGAGAAAATATTTGCTGTTTTATGCATGCGTTGCCAGTCCATTTTGAACATGGCGATGTTTCGTTGTAAAAAAGACATAGCAATAAAGTATTCTCGTACTCTTAATAAACACTTCGAGAGTTCTTCCAAAGTCGCCCAGGCACCTTCTCCATGCATTGCAAGAAGCACAGGCACACCATCCCCTCTTTCCCCAATGCCTTCTCCTGCCAGCTCCGTAGGGTCCCAGTCAAGTGCTGGCAGTGTGGGGAGCAGTGGGGTGGCTGCCACTATCAGCACCCCAGTCACCATCCAGAATATGACATCTTCCTATGTCACCATCACATCCCATGTTCTTACCGCCTTTGACCTTTGGGAACAGGCCGAGGCCCTCACGAGGAAGAATAAAGAATTCTTTGCTCGGCTCAGCACAAATGTGTGCACCTTGGCCCTCAACAGCAGTTTGGTGGACCTGGTGCACTATACACGACAGGGTTTTCAGCAGCTACAAGAATTAACCAAAACACCTTAA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKEMTHSWPPPLTAIHTPSTAEPSKFPFPTKDSQHVSSVTQNQKQYDTSSKTHSNSQQGTSSMLEDDLQLSDSEDSDSEQTPEKPPSSSAPPSAPQSLPEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPEPPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRHPESKGSSDSATSQEHSESKDPPPKSSSKAPRAPPEAPHPGKRSCQKSPAQQEPPQRQTVGTKQPKKPVKASARAGSRTSLQGEREPGLLPYGSRDQTSKDKPKVKTKGRPRAAASNEPKPAVPPSSEKKKHKSSLPAPSKALSGPEPAKDNVEDRTPEHFALVPLTESQGPPHSGSGSRTSGCRQAVVVQEDSRKDRLPLPLRDTKLLSPLRDTPPPQSLMVKITLDLLSRIPQPPGKGSRQRKAEDKQPPAGKKHSSEKRSSDSSSKLAKKRKGEAERDCDNKKIRLEKEIKSQSSSSSSSHKESSKTKPSRPSSQSSKKEMLPPPPVSSSSQKPAKPALKRSRREADTCGQDPPKSASSTKSNHKDSSIPKQRRVEGKGSRSSSEHKGSSGDTANPFPVPSLPNGNSKPGKPQVKFDKQQADLHMREAKKMKQKAELMTDRVGKAFKYLEAVLSFIECGIATESESQSSKSAYSVYSETVDLIKFIMSLKSFSDATAPTQEKIFAVLCMRCQSILNMAMFRCKKDIAIKYSRTLNKHFESSSKVAQAPSPCIARSTGTPSPLSPMPSPASSVGSQSSAGSVGSSGVAATISTPVTIQNMTSSYVTITSHVLTAFDLWEQAEALTRKNKEFFARLSTNVCTLALNSSLVDLVHYTRQGFQQLQELTKTP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation 30378 AFF1::KMT2A ENSG00000172493.23::ENSG00000118058.25 MV411 SRR8615687 SRR8652133 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1076 FALSE NA FALSE NA AFF1 ENSG00000172493.23 protein_coding + + chr4:86935002-87141039:+ chr4:87084164:+ chr4:87856154-88062191:+ chr4:88005316:+ KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118484183:+ chr11:118307171-118397547:+ chr11:118354898:+ chr4:87088174 chr11:118482962 NA NA chr4:88009326 chr11:118353677 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AF-4|15-527|6.8e-208^BRD4_CDT|16-34|7.3e-05^AFF4_CHD|204-238|2.7^AFF4_CHD|461-487|4^AFF4_CHD|528-568|4^AF-4|551-688|4^AF4_int|768-782|5e-11^AF-4|792-956|1^AFF4_CHD|844-875|4^AFF4_CHD-PARTIAL|956-1104~|7e-135^AF-4-PARTIAL|1093-1104~|0.71 none ["AFF1:Oncogene"];["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["ChimerKB","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr11] 5 11 5 11 ONLY_REF_SPLICE YES_LDAS 0.1628 GT 1.7819 AG 1.7056 ENST00000395146.9 1-1104 ENST00000691053.1 4087-11991 chr4|+|[0]86948534-86948571[1]|[2]87046166-87046286[2]|[0]87046695-87047594[2]|[0]87084120-87084164[2]<==>chr11|+|[0]118484183-118484314[2]|[0]118484862-118484975[2]|[0]118488614-118488760[2]|[0]118489792-118489887[2]|[0]118490129-118490249[0]|[1]118491196-118491309[0]|[1]118491744-118491928[2]|[0]118493057-118493230[2]|[0]118494288-118494398[2]|[0]118494694-118494767[1]|[2]118495700-118495893[0]|[1]118496261-118496367[2]|[0]118496724-118496804[2]|[0]118497936-118498073[2]|[0]118498370-118498528[2]|[0]118499303-118499420[0]|[1]118499835-118499913[1]|[2]118500987-118501147[0]|[1]118501672-118501857[0]|[1]118502398-118506646[1]|[2]118507529-118507609[1]|[2]118509136-118509200[0]|[1]118509948-118510118[0]|[1]118511951-118512025[0]|[1]118519618-118519792[1]|[2]118519957-118520064[1]|[2]118520802-118520885[1]|[2]118521288-118521417[2]|[0]118521897-118522172[2] atggcatttacagaaagagtcaacagcagtggcaacagtttgtacaatgacgacagaaacctgcttcgaattagagagaaggaaagacgcaaccaggaagcccaccaagagaaagaggcatttcctgaaaagattcccctttttggagagccctacaagacagcaaaaggtgatgagctgtctagtcgaatacagaacatgttgggaaactacgaagaagtgaaggagttccttagtactaagtctcacactcatcgcctggatgcttctgaaaataggttgggaaagccgaaatatcctttaattcctgacaaagggagcagcattccatccagctccttccacactagtgtccaccaccagtccattcacactcctgcgtctggaccactttctgttggcaacattagccacaatccaaagatggcgcagccaagaactgaaccaatgccaagtctccatgccaaaagctgcggcccaccggacagccagcacctgacccaggatcgccttggtcaggaggggttcggctctagtcatcacaagaaaggtgaccgaagagctgacggagaccactgtgcttcggtgacagattcggctccagagagggagctttctcccttaatctctttgccttccccagttccccctttgtcacctatacattccaaccagcaaactcttccccggacgcaaggaagcagcaaggttcatggcagcagcaataacagtaaaggctattgcccagccaaatctcccaaggacctagcagtgaaagtccatgataaagagacccctcaagacagtttggtggcccctgcccagccgccttctcagacatttccacctccctccctcccctcaaaaagtgttgcaatgcagcagaagcccacggcttatgtccggcccatggatggtcaagatcaggcccctagtgaatcccctgaactgaaaccactgccggaggactatcgacagcagacctttgaaaaaacagacttgaaagtgcctgccaaagccaagctcaccaaactgaagatgccttctcagtcagttgagcagacctactccaatgaagtccattgtgttgaagagattctgaagGAAAAACCACCTCCGGTCAATAAGCAGGAGAATGCAGGCACTTTGAACATCCTCAGCACTCTCTCCAATGGCAATAGTTCTAAGCAAAAAATTCCAGCAGATGGAGTCCACAGGATCAGAGTGGACTTTAAGGAGGATTGTGAAGCAGAAAATGTGTGGGAGATGGGAGGCTTAGGAATCTTGACTTCTGTTCCTATAACACCCAGGGTGGTTTGCTTTCTCTGTGCCAGTAGTGGGCATGTAGAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTGGAGGACCAGCTGGAAAATTGGTGTTGTCGTCGTTGCAAATTCTGTCACGTTTGTGGAAGGCAACATCAGGCTACAAAGCAGCTGCTGGAGTGTAATAAGTGCCGAAACAGCTATCACCCTGAGTGCCTGGGACCAAACTACCCCACCAAACCCACAAAGAAGAAGAAAGTCTGGATCTGTACCAAGTGTGTTCGCTGTAAGAGCTGTGGATCCACAACTCCAGGCAAAGGGTGGGATGCACAGTGGTCTCATGATTTCTCACTGTGTCATGATTGCGCCAAGCTCTTTGCTAAAGGAAACTTCTGCCCTCTCTGTGACAAATGTTATGATGATGATGACTATGAGAGTAAGATGATGCAATGTGGAAAGTGTGATCGCTGGGTCCATTCCAAATGTGAGAATCTTTCAGATGAGATGTATGAGATTCTATCTAATCTGCCAGAAAGTGTGGCCTACACTTGTGTGAACTGTACTGAGCGGCACCCTGCAGAGTGGCGACTGGCCCTTGAAAAAGAGCTGCAGATTTCTCTGAAGCAAGTTCTGACAGCTTTGTTGAATTCTCGGACTACCAGCCATTTGCTACGCTACCGGCAGGCTGCCAAGCCTCCAGACTTAAATCCCGAGACAGAGGAGAGTATACCTTCCCGCAGCTCCCCCGAAGGACCTGATCCACCAGTTCTTACTGAGGTCAGCAAACAGGATGATCAGCAGCCTTTAGATCTAGAAGGAGTCAAGAGGAAGATGGACCAAGGGAATTACACATCTGTGTTGGAGTTCAGTGATGATATTGTGAAGATCATTCAAGCAGCCATTAATTCAGATGGAGGACAGCCAGAAATTAAAAAAGCCAACAGCATGGTCAAGTCCTTCTTCATTCGGCAAATGGAACGTGTTTTTCCATGGTTCAGTGTCAAAAAGTCCAGGTTTTGGGAGCCAAATAAAGTATCAAGCAACAGTGGGATGTTACCAAACGCAGTGCTTCCACCTTCACTTGACCATAATTATGCTCAGTGGCAGGAGCGAGAGGAAAACAGCCACACTGAGCAGCCTCCTTTAATGAAGAAAATCATTCCAGCTCCCAAACCCAAAGGTCCTGGAGAACCAGACTCACCAACTCCTCTGCATCCTCCTACACCACCAATTTTGAGTACTGATAGGAGTCGAGAAGACAGTCCAGAGCTGAACCCACCCCCAGGCATAGAAGACAATAGACAGTGTGCGTTATGTTTGACTTATGGTGATGACAGTGCTAATGATAGCAGAATCGTTAAGAGCCCGAGTTCTGCCGCCTGCCTGAATACATTTCTGTGCTTAACTGCCTACTTATTGACTTTGGATGCTGGTCGTTTACTATATATTGGCCAAAATGAGTGGACACATGTAAATTGTGCTTTGTGGTCAGCGGAAGTGTTTGAAGATGATGACGGATCACTAAAGAATGTGCATATGGCTGTGATCAGGGGCAAGCAGCTGAGATGTGAATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCACATCCTGCACCAGCAACTATCACTTCATGTGTTCCCGAGCCAAGAACTGTGTCTTTCTGGATGATAAAAAAGTATATTGCCAACGACATCGGGATTTGATCAAAGGCGAAGTGGTTCCTGAGAATGGATTTGAAGTTTTCAGAAGAGTGTTTGTGGACTTTGAAGGAATCAGCTTGAGAAGGAAGTTTCTCAATGGCTTGGAACCAGAAAATATCCACATGATGATTGGGTCTATGACAATCGACTGCTTAGGAATTCTAAATGATCTCTCCGACTGTGAAGATAAGCTCTTTCCTATTGGATATCAGTGTTCCAGGGTATACTGGAGCACCACAGATGCTCGCAAGCGCTGTGTATATACATGCAAGATAGTGGAGTGCCGTCCTCCAGTCGTAGAGCCGGATATCAACAGCACTGTTGAACATGATGAAAACAGGACCATTGCCCATAGTCCAACATCTTTTACAGAAAGTTCATCAAAAGAGAGTCAAAACACAGCTGAAATTATAAGTCCTCCATCACCAGACCGACCTCCTCATTCACAAACCTCTGGCTCCTGTTATTATCATGTCATCTCAAAGGTCCCCAGGATTCGAACACCCAGTTATTCTCCAACACAGAGATCCCCTGGCTGTCGACCGTTGCCTTCTGCAGGAAGTCCTACCCCAACCACTCATGAAATAGTCACAGTAGGTGATCCTTTACTCTCCTCTGGACTTCGAAGCATTGGCTCCAGGCGTCACAGTACCTCTTCCTTATCACCCCAGCGGTCCAAACTCCGGATAATGTCTCCAATGAGAACTGGGAATACTTACTCTAGGAATAATGTTTCCTCAGTCTCCACCACCGGGACCGCTACTGATCTTGAATCAAGTGCCAAAGTAGTTGATCATGTCTTAGGGCCACTGAATTCAAGTACTAGTTTAGGGCAAAACACTTCCACCTCTTCAAATTTGCAAAGGACAGTGGTTACTGTAGGCAATAAAAACAGTCACTTGGATGGATCTTCATCTTCAGAAATGAAGCAGTCCAGTGCTTCAGACTTGGTGTCCAAGAGCTCCTCTTTAAAGGGAGAGAAGACCAAAGTGCTGAGTTCCAAGAGCTCAGAGGGATCTGCACATAATGTGGCTTACCCTGGAATTCCTAAACTGGCCCCACAGGTTCATAACACAACATCTAGAGAACTGAATGTTAGTAAAATCGGCTCCTTTGCTGAACCCTCTTCAGTGTCGTTTTCTTCTAAAGAGGCCCTCTCCTTCCCACACCTCCATTTGAGAGGGCAAAGGAATGATCGAGACCAACACACAGATTCTACCCAATCAGCAAACTCCTCTCCAGATGAAGATACTGAAGTCAAAACCTTGAAGCTATCTGGAATGAGCAACAGATCATCCATTATCAACGAACATATGGGATCTAGTTCCAGAGATAGGAGACAGAAAGGGAAAAAATCCTGTAAAGAAACTTTCAAAGAAAAGCATTCCAGTAAATCTTTTTTGGAACCTGGTCAGGTGACAACTGGTGAGGAAGGAAACTTGAAGCCAGAGTTTATGGATGAGGTTTTGACTCCTGAGTATATGGGCCAACGACCATGTAACAATGTTTCTTCTGATAAGATTGGTGATAAAGGCCTTTCTATGCCAGGAGTCCCCAAAGCTCCACCCATGCAAGTAGAAGGATCTGCCAAGGAATTACAGGCACCACGGAAACGCACAGTCAAAGTGACACTGACACCTCTAAAAATGGAAAATGAGAGTCAATCCAAAAATGCCCTGAAAGAAAGTAGTCCTGCTTCCCCTTTGCAAATAGAGTCAACATCTCCCACAGAACCAATTTCAGCCTCTGAAAATCCAGGAGATGGTCCAGTGGCCCAACCAAGCCCCAATAATACCTCATGCCAGGATTCTCAAAGTAACAACTATCAGAATCTTCCAGTACAGGACAGAAACCTAATGCTTCCAGATGGCCCCAAACCTCAGGAGGATGGCTCTTTTAAAAGGAGGTATCCCCGTCGCAGTGCCCGTGCACGTTCTAACATGTTTTTTGGGCTTACCCCACTCTATGGAGTAAGATCCTATGGTGAAGAAGACATTCCATTCTACAGCAGCTCAACTGGGAAGAAGCGAGGCAAGAGATCAGCTGAAGGACAGGTGGATGGGGCCGATGACTTAAGCACTTCAGATGAAGACGACTTATACTATTACAACTTCACTAGAACAGTGATTTCTTCAGGTGGAGAGGAACGACTGGCATCCCATAATTTATTTCGGGAGGAGGAACAGTGTGATCTTCCAAAAATCTCACAGTTGGATGGTGTTGATGATGGGACAGAGAGTGATACTAGTGTCACAGCCACAACAAGGAAAAGCAGCCAGATTCCAAAAAGAAATGGTAAAGAAAATGGAACAGAGAACTTAAAGATTGATAGACCTGAAGATGCTGGGGAGAAAGAACATGTCACTAAGAGTTCTGTTGGCCACAAAAATGAGCCAAAGATGGATAACTGCCATTCTGTAAGCAGAGTTAAAACACAGGGACAAGATTCCTTGGAAGCTCAGCTCAGCTCATTGGAGTCAAGCCGCAGAGTCCACACAAGTACCCCCTCCGACAAAAATTTACTGGACACCTATAATACTGAGCTCCTGAAATCAGATTCAGACAATAACAACAGTGATGACTGTGGGAATATCCTGCCTTCAGACATTATGGACTTTGTACTAAAGAATACTCCATCCATGCAGGCTTTGGGTGAGAGCCCAGAGTCATCTTCATCAGAACTCCTGAATCTTGGTGAAGGATTGGGTCTTGACAGTAATCGTGAAAAAGACATGGGTCTTTTTGAAGTATTTTCTCAGCAGCTGCCTACAACAGAACCTGTGGATAGTAGTGTCTCTTCCTCTATCTCAGCAGAGGAACAGTTTGAGTTGCCTCTAGAGCTACCATCTGATCTGTCTGTCTTGACCACCCGGAGTCCCACTGTCCCCAGCCAGAATCCCAGTAGACTAGCTGTTATCTCAGACTCAGGGGAGAAGAGAGTAACCATCACAGAAAAATCTGTAGCCTCCTCTGAAAGTGACCCAGCACTGCTGAGCCCAGGAGTAGATCCAACTCCTGAAGGCCACATGACTCCTGATCATTTTATCCAAGGACACATGGATGCAGACCACATCTCTAGCCCTCCTTGTGGTTCAGTAGAGCAAGGTCATGGCAACAATCAGGATTTAACTAGGAACAGTAGCACCCCTGGCCTTCAGGTACCTGTTTCCCCAACTGTTCCCATCCAGAACCAGAAGTATGTGCCCAATTCTACTGATAGTCCTGGCCCGTCTCAGATTTCCAATGCAGCTGTCCAGACCACTCCACCCCACCTGAAGCCAGCCACTGAGAAACTCATAGTTGTTAACCAGAACATGCAGCCACTTTATGTTCTCCAAACTCTTCCAAATGGAGTGACCCAAAAAATCCAATTGACCTCTTCTGTTAGTTCTACACCCAGTGTGATGGAGACAAATACTTCAGTATTGGGACCCATGGGAGGTGGTCTCACCCTTACCACAGGACTAAATCCAAGCTTGCCAACTTCTCAATCTTTGTTCCCTTCTGCTAGCAAAGGATTGCTACCCATGTCTCATCACCAGCACTTACATTCCTTCCCTGCAGCTACTCAAAGTAGTTTCCCACCAAACATCAGCAATCCTCCTTCAGGCCTGCTTATTGGGGTTCAGCCTCCTCCGGATCCCCAACTTTTGGTTTCAGAATCCAGCCAGAGGACAGACCTCAGTACCACAGTAGCCACTCCATCCTCTGGACTCAAGAAAAGACCCATATCTCGTCTACAGACCCGAAAGAATAAAAAACTTGCTCCCTCTAGTACCCCTTCAAACATTGCCCCTTCTGATGTGGTTTCTAATATGACATTGATTAACTTCACACCCTCCCAGCTTCCTAATCATCCAAGTCTGTTAGATTTGGGGTCACTTAATACTTCATCTCACCGAACTGTCCCCAACATCATAAAAAGATCTAAATCTAGCATCATGTATTTTGAACCGGCACCCCTGTTACCACAGAGTGTGGGAGGAACTGCTGCCACAGCGGCAGGCACATCAACAATAAGCCAGGATACTAGCCACCTCACATCAGGGTCTGTGTCTGGCTTGGCATCCAGTTCCTCTGTCTTGAATGTTGTATCCATGCAAACTACCACAACCCCTACAAGTAGTGCGTCAGTTCCAGGACACGTCACCTTAACCAACCCAAGGTTGCTTGGTACCCCAGATATTGGCTCAATAAGCAATCTTTTAATCAAAGCTAGCCAGCAGAGCCTGGGGATTCAGGACCAGCCTGTGGCTTTACCGCCAAGTTCAGGAATGTTTCCACAACTGGGGACATCACAGACCCCCTCTACTGCTGCAATAACAGCGGCATCTAGCATCTGTGTGCTCCCCTCCACTCAGACTACGGGCATAACAGCCGCTTCACCTTCTGGGGAAGCAGACGAACACTATCAGCTTCAGCATGTGAACCAGCTCCTTGCCAGCAAAACTGGGATTCATTCTTCCCAGCGTGATCTTGATTCTGCTTCAGGGCCCCAGGTATCCAACTTTACCCAGACGGTAGACGCTCCTAATAGCATGGGACTGGAGCAGAACAAGGCTTTATCCTCAGCTGTGCAAGCCAGCCCCACCTCTCCTGGGGGTTCTCCATCCTCTCCATCTTCTGGACAGCGGTCAGCAAGCCCTTCAGTGCCGGGTCCCACTAAACCCAAACCAAAAACCAAACGGTTTCAGCTGCCTCTAGACAAAGGGAATGGCAAGAAGCACAAAGTTTCCCATTTGCGGACCAGTTCTTCTGAAGCACACATTCCAGACCAAGAAACGACATCCCTGACCTCAGGCACAGGGACTCCAGGAGCAGAGGCTGAGCAGCAGGATACAGCTAGCGTGGAGCAGTCCTCCCAGAAGGAGTGTGGGCAACCTGCAGGGCAAGTCGCTGTTCTTCCGGAAGTTCAGGTGACCCAAAATCCAGCAAATGAACAAGAAAGTGCAGAACCTAAAACAGTGGAAGAAGAGGAAAGTAATTTCAGCTCCCCACTGATGCTTTGGCTTCAGCAAGAACAAAAGCGGAAGGAAAGCATTACTGAGAAAAAACCCAAGAAAGGACTTGTTTTTGAAATTTCCAGTGATGATGGCTTTCAGATCTGTGCAGAAAGTATTGAAGATGCCTGGAAGTCATTGACAGATAAAGTCCAGGAAGCTCGATCAAATGCCCGCCTAAAGCAGCTCTCATTTGCAGGTGTTAACGGTTTGAGGATGCTGGGGATTCTCCATGATGCAGTTGTGTTCCTCATTGAGCAGCTGTCTGGTGCCAAGCACTGTCGAAATTACAAATTCCGTTTCCACAAGCCAGAGGAGGCCAATGAACCCCCCTTGAACCCTCACGGCTCAGCCAGGGCTGAAGTCCACCTCAGGAAGTCAGCATTTGACATGTTTAACTTCCTGGCTTCTAAACATCGTCAGCCTCCTGAATACAACCCCAATGATGAAGAAGAGGAGGAGGTACAGCTGAAGTCAGCTCGGAGGGCAACTAGCATGGATCTGCCAATGCCCATGCGCTTCCGGCACTTAAAAAAGACTTCTAAGGAGGCAGTTGGTGTCTACAGGTCTCCCATCCATGGCCGGGGTCTTTTCTGTAAGAGAAACATTGATGCAGGTGAGATGGTGATTGAGTATGCCGGCAACGTCATCCGCTCCATCCAGACTGACAAGCGGGAAAAGTATTACGACAGCAAGGGCATTGGTTGCTATATGTTCCGAATTGATGACTCAGAGGTAGTGGATGCCACCATGCATGGAAATGCTGCACGCTTCATCAATCACTCGTGTGAGCCTAACTGCTATTCTCGGGTCATCAATATTGATGGGCAGAAGCACATTGTCATCTTTGCCATGCGTAAGATCTACCGAGGAGAGGAACTCACTTACGACTATAAGTTCCCCATTGAGGATGCCAGCAACAAGCTGCCCTGCAACTGTGGCGCCAAGAAATGCCGGAAGTTCCTAAACTAA MAFTERVNSSGNSLYNDDRNLLRIREKERRNQEAHQEKEAFPEKIPLFGEPYKTAKGDELSSRIQNMLGNYEEVKEFLSTKSHTHRLDASENRLGKPKYPLIPDKGSSIPSSSFHTSVHHQSIHTPASGPLSVGNISHNPKMAQPRTEPMPSLHAKSCGPPDSQHLTQDRLGQEGFGSSHHKKGDRRADGDHCASVTDSAPERELSPLISLPSPVPPLSPIHSNQQTLPRTQGSSKVHGSSNNSKGYCPAKSPKDLAVKVHDKETPQDSLVAPAQPPSQTFPPPSLPSKSVAMQQKPTAYVRPMDGQDQAPSESPELKPLPEDYRQQTFEKTDLKVPAKAKLTKLKMPSQSVEQTYSNEVHCVEEILKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVEFVYCQVCCEPFHKFCLEENERPLEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQAAKPPDLNPETEESIPSRSSPEGPDPPVLTEVSKQDDQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSRFWEPNKVSSNSGMLPNAVLPPSLDHNYAQWQEREENSHTEQPPLMKKIIPAPKPKGPGEPDSPTPLHPPTPPILSTDRSREDSPELNPPPGIEDNRQCALCLTYGDDSANDSRIVKSPSSAACLNTFLCLTAYLLTLDAGRLLYIGQNEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDKKVYCQRHRDLIKGEVVPENGFEVFRRVFVDFEGISLRRKFLNGLEPENIHMMIGSMTIDCLGILNDLSDCEDKLFPIGYQCSRVYWSTTDARKRCVYTCKIVECRPPVVEPDINSTVEHDENRTIAHSPTSFTESSSKESQNTAEIISPPSPDRPPHSQTSGSCYYHVISKVPRIRTPSYSPTQRSPGCRPLPSAGSPTPTTHEIVTVGDPLLSSGLRSIGSRRHSTSSLSPQRSKLRIMSPMRTGNTYSRNNVSSVSTTGTATDLESSAKVVDHVLGPLNSSTSLGQNTSTSSNLQRTVVTVGNKNSHLDGSSSSEMKQSSASDLVSKSSSLKGEKTKVLSSKSSEGSAHNVAYPGIPKLAPQVHNTTSRELNVSKIGSFAEPSSVSFSSKEALSFPHLHLRGQRNDRDQHTDSTQSANSSPDEDTEVKTLKLSGMSNRSSIINEHMGSSSRDRRQKGKKSCKETFKEKHSSKSFLEPGQVTTGEEGNLKPEFMDEVLTPEYMGQRPCNNVSSDKIGDKGLSMPGVPKAPPMQVEGSAKELQAPRKRTVKVTLTPLKMENESQSKNALKESSPASPLQIESTSPTEPISASENPGDGPVAQPSPNNTSCQDSQSNNYQNLPVQDRNLMLPDGPKPQEDGSFKRRYPRRSARARSNMFFGLTPLYGVRSYGEEDIPFYSSSTGKKRGKRSAEGQVDGADDLSTSDEDDLYYYNFTRTVISSGGEERLASHNLFREEEQCDLPKISQLDGVDDGTESDTSVTATTRKSSQIPKRNGKENGTENLKIDRPEDAGEKEHVTKSSVGHKNEPKMDNCHSVSRVKTQGQDSLEAQLSSLESSRRVHTSTPSDKNLLDTYNTELLKSDSDNNNSDDCGNILPSDIMDFVLKNTPSMQALGESPESSSSELLNLGEGLGLDSNREKDMGLFEVFSQQLPTTEPVDSSVSSSISAEEQFELPLELPSDLSVLTTRSPTVPSQNPSRLAVISDSGEKRVTITEKSVASSESDPALLSPGVDPTPEGHMTPDHFIQGHMDADHISSPPCGSVEQGHGNNQDLTRNSSTPGLQVPVSPTVPIQNQKYVPNSTDSPGPSQISNAAVQTTPPHLKPATEKLIVVNQNMQPLYVLQTLPNGVTQKIQLTSSVSSTPSVMETNTSVLGPMGGGLTLTTGLNPSLPTSQSLFPSASKGLLPMSHHQHLHSFPAATQSSFPPNISNPPSGLLIGVQPPPDPQLLVSESSQRTDLSTTVATPSSGLKKRPISRLQTRKNKKLAPSSTPSNIAPSDVVSNMTLINFTPSQLPNHPSLLDLGSLNTSSHRTVPNIIKRSKSSIMYFEPAPLLPQSVGGTAATAAGTSTISQDTSHLTSGSVSGLASSSSVLNVVSMQTTTTPTSSASVPGHVTLTNPRLLGTPDIGSISNLLIKASQQSLGIQDQPVALPPSSGMFPQLGTSQTPSTAAITAASSICVLPSTQTTGITAASPSGEADEHYQLQHVNQLLASKTGIHSSQRDLDSASGPQVSNFTQTVDAPNSMGLEQNKALSSAVQASPTSPGGSPSSPSSGQRSASPSVPGPTKPKPKTKRFQLPLDKGNGKKHKVSHLRTSSSEAHIPDQETTSLTSGTGTPGAEAEQQDTASVEQSSQKECGQPAGQVAVLPEVQVTQNPANEQESAEPKTVEEEESNFSSPLMLWLQQEQKRKESITEKKPKKGLVFEISSDDGFQICAESIEDAWKSLTDKVQEARSNARLKQLSFAGVNGLRMLGILHDAVVFLIEQLSGAKHCRNYKFRFHKPEEANEPPLNPHGSARAEVHLRKSAFDMFNFLASKHRQPPEYNPNDEEEEEVQLKSARRATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 1 1 AL leukaemia_lymphoma fusion translocation TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other 30389 MICALL2::MAD1L1 ENSG00000164877.19::ENSG00000002822.16 U251MG SRR8615690 SRR8670720 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1083 FALSE NA FALSE NA MICALL2 ENSG00000164877.19 protein_coding - - chr7:1428465-1459470:- chr7:1459184:- chr7:1468101-1499106:- chr7:1498820:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1816228:- chr7:1855429-2272878:- chr7:1855864:- chr7:1454695 chr7:1876719 NA NA chr7:1494331 chr7:1916355 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH|5-107|3.1e-29^CAMSAP_CH|24-84|2e-05 none ["MAD1L1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.36Mb] 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.1675 GT 1.7232 AG 1.5546 ENST00000297508.8 1-143 ENST00000265854.12 1999-2157 chr7|-|[1]1459184-1459326[0]<==>chr7|-|[2]1816070-1816228[0] atggcggccatcagggcgctgcaacagtggtgccggcagcagtgcgagggctaccgcgacgtgaatatctgcaacatgaccacgtcgttccgcgacggcctggctttctgcgccatcctgcaccgccaccggcccgacctcatGCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAG MAAIRALQQWCRQQCEGYRDVNICNMTTSFRDGLAFCAILHRHRPDLMPPAPRVPRCSYWRQSSHTPWASSSRCTCGARTASLPSSARSPSSSSAARPWR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30400 ENOSF1::DLGAP1 ENSG00000132199.20::ENSG00000170579.19 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ENOSF1 ENSG00000132199.20 protein_coding - - chr18:670318-712662:- chr18:688574:- chr18:670318-712662:- chr18:688574:- DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:4005201:- chr18:3496030-4455307:- chr18:4005201:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DLGAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:2.78Mb] 41 16 41 16 ONLY_REF_SPLICE YES_LDAS 0.7414 GT 1.8295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30401 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary star-fusion TRUE TRUE TRUE 1086 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59631725,chr17:59631723 chr17:59837640,chr17:59837635 NA NA chr17:57709086,chr17:57709084 chr17:57915001,chr17:57914996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel-PARTIAL|19-42~|2.1e-10 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 39 27 39 27 ONLY_REF_SPLICE YES_LDAS 0.8585 GT 1.9329 AG 1.8062 ENST00000700709.1 1-42 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30404 KIF3A::ENSG00000251205 ENSG00000131437.16::ENSG00000251205.3 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KIF3A ENSG00000131437.16 protein_coding - - chr5:132692628-132737638:- chr5:132699171:- chr5:132028320-132073330:- chr5:132034863:- ENSG00000251205 ENSG00000251205.3 lncRNA + + chr5:143531331-143598434:+ chr5:143559005:+ chr5:142910896-142977999:+ chr5:142938570:+ chr5:132695424,chr5:132695426 chr5:143555110,chr5:143555108 NA NA chr5:132031116,chr5:132031118 chr5:142934675,chr5:142934673 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 25 18 25 18 ONLY_REF_SPLICE YES_LDAS 0.5593 GT 1.2729 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30407 LIN52::ENSG00000258471 ENSG00000205659.12::ENSG00000258471.2 U2OS SRR8615692 SRR8670721 BONE osteosarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LIN52 ENSG00000205659.12 protein_coding + + chr14:74084956-74201493:+ chr14:74101238:+ chr14:74551659-74668196:+ chr14:74567941:+ ENSG00000258471 ENSG00000258471.2 lncRNA - - chr14:20995837-21014822:- chr14:20999830:- chr14:21463996-21482981:- chr14:21467989:- chr14:74133212 chr14:20999959 NA NA chr14:74599915 chr14:21468118 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 9 10 9 ONLY_REF_SPLICE YES_LDAS 0.2472 GT 1.6402 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30419 DLEU2::RB1 ENSG00000231607.15::ENSG00000139687.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1091 FALSE NA FALSE NA DLEU2 ENSG00000231607.15 lncRNA - - chr13:49956670-50125720:- chr13:50125302:- chr13:50530806-50699856:- chr13:50699438:- RB1 ENSG00000139687.16 protein_coding + + chr13:48303744-48599436:+ chr13:48452993:+ chr13:48877880-49173572:+ chr13:49027129:+ chr13:50095200,chr13:50095203 chr13:48433192,chr13:48433189 NA NA chr13:50669336,chr13:50669339 chr13:49007328,chr13:49007325 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DLEU2:Oncogene"];["RB1:Oncogene","RB1:OncomapV4_panel","RB1:ArcherDX_panel","RB1:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:1.50Mb] 259 257 259 257 ONLY_REF_SPLICE YES_LDAS 6.5823 GT 1.8892 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE retinoblastoma gene 1 Yes retinoblastoma, sarcoma, breast, small cell lung carcinoma retinoblastoma, sarcoma, breast, small cell lung carcinoma familial retinoblastoma leukaemia_lymphoma, epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 30420 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1092 TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50083194:+ chr13:50656305-51480992:+ chr13:50657330:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48422790:- chr13:48963703-49018840:- chr13:48996926:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DLEU1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:1.64Mb] 55 60 55 45.93 ONLY_REF_SPLICE YES_LDAS 1.2875 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30421 DLEU1::LPAR6 ENSG00000176124.15::ENSG00000139679.16 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1093 TRUE 1946 TRUE 753 DLEU1 ENSG00000176124.15 lncRNA + + chr13:50082169-50906856:+ chr13:50082557:+ chr13:50656305-51480992:+ chr13:50656693:+ LPAR6 ENSG00000139679.16 protein_coding - - chr13:48389567-48444704:- chr13:48422790:- chr13:48963703-49018840:- chr13:48996926:- chr13:50095199,chr13:50095200 chr13:48433192,chr13:48433191 NA NA chr13:50669335,chr13:50669336 chr13:49007328,chr13:49007327 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DLEU1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:1.64Mb] 35 43 35 14.07 ONLY_REF_SPLICE YES_LDAS 0.626 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30422 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 1094 TRUE 4792 TRUE 1795 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118484975:+ chr11:118307171-118397547:+ chr11:118355690:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118488422,chr11:118488593,chr11:118488415 chr9:20377773,chr9:20377776,chr9:20377780 NA NA chr11:118359137,chr11:118359308,chr11:118359130 chr9:20377771,chr9:20377774,chr9:20377778 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.096^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1657|0.0086^PHD|1602-1657|8.6e-10^PHD_2|1616-1632|0.033^Bromodomain|1734-1775|1e-05^zf-HC5HC2H_2|1905-2008|1.7e-12^zf-HC5HC2H|1933-2011|9e-14^PHD|1966-1995|0.95^FYRN|2052-2107|3.6e-20^FYRC|3702-3781|8.3e-24^SET|3873-3978|6.7e-31 none ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["MLLT3:Oncogene"];["Mitelman","ChimerKB","DepMap2023","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","ChimerPub","Cosmic"];INTERCHROMOSOMAL[chr11--chr9] 34 28 34 26.05 ONLY_REF_SPLICE YES_LDAS 0.766 GT 1.7465 AG 1.9086 ENST00000710560.1 1-4431 ENST00000630269.2 1117-1698 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]|[0]118484183-118484314[2]|[0]118484862-118484975[2]<==>chr9|-|[2]20346443-20346574[0]|[2]20353525-20353596[0]|[2]20354808-20354879[0]|[2]20360742-20360841[2]|[1]20363476-20363605[1]|[0]20365669-20365744[0] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaaggaaaaaccacctccggtcaataagcaggagaatgcaggcactttgaacatcctcagcactctctccaatggcaatagttctaagcaaaaaattccagcagatggagtccacaggatcagagtggactttaaggaggattgtgaagcagaaaatgtgtgggagatgggaggcttaggaatcttgacttctgttcctataacacccagggtggtttgctttctctgtgccagtagtgggcatgtagagTCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAGGTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACAATGACTCTGAAATGGAGAGGCCTGTAAATAGAGGAGGCAGCCGAAGTCGCAGAGTTAGCTTAAGTGATGGCAGCGATAGTGAAAGCAGTTCTGCTTCTTCACCCCTACATCACGAACCTCCACCACCCTTACTAAAAACCAACAACAACCAGATTCTTGAAGTGAAAAGTCCAATAAAGCAAAGCAAATCAGATAAGCAAATAAAGAATGGTGAATGTGACAAGGCATACCTAGATGAACTGGTAGAGCTTCACAGAAGGTTAATGACATTGAGAGAAAGACACATTCTGCAGCAGATCGTGAACCTTATAGAAGAAACTGGACACTTTCATATCACAAACACAACATTTGATTTTGATCTTTGCTCGCTGGACAAAACCACAGTCCGTAAACTACAGAGTTACCTGGAAACATCTGGAACATCCTGA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKEDCEAENVWEMGGLGILTSVPITPRVVCFLCASSGHVESEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 30424 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 MONOMAC1 SRR8615695 SRR8652131 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE FALSE NA TRUE 4792 TRUE 1795 KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118484314:+ chr11:118307171-118397547:+ chr11:118355029:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118488422,chr11:118488593,chr11:118488415 chr9:20377773,chr9:20377776,chr9:20377780 NA NA chr11:118359137,chr11:118359308,chr11:118359130 chr9:20377771,chr9:20377774,chr9:20377778 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.096^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1657|0.0086^PHD|1602-1657|8.6e-10^PHD_2|1616-1632|0.033^Bromodomain|1734-1775|1e-05^zf-HC5HC2H_2|1905-2008|1.7e-12^zf-HC5HC2H|1933-2011|9e-14^PHD|1966-1995|0.95^FYRN|2052-2107|3.6e-20^FYRC|3702-3781|8.3e-24^SET|3873-3978|6.7e-31 none ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["MLLT3:Oncogene"];["Mitelman","ChimerKB","DepMap2023","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","ChimerPub","Cosmic"];INTERCHROMOSOMAL[chr11--chr9] 11 11 11 1.95 ONLY_REF_SPLICE YES_LDAS 0.1652 GT 1.8256 AG 1.9086 ENST00000710560.1 1-4317 ENST00000630269.2 1117-1698 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]|[0]118484183-118484314[2]<==>chr9|-|[2]20346443-20346574[0]|[2]20353525-20353596[0]|[2]20354808-20354879[0]|[2]20360742-20360841[2]|[1]20363476-20363605[1]|[0]20365669-20365744[0] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaaggaaaaaccacctccggtcaataagcaggagaatgcaggcactttgaacatcctcagcactctctccaatggcaatagttctaagcaaaaaattccagcagatggagtccacaggatcagagtggactttaagTCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAGGTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACAATGACTCTGAAATGGAGAGGCCTGTAAATAGAGGAGGCAGCCGAAGTCGCAGAGTTAGCTTAAGTGATGGCAGCGATAGTGAAAGCAGTTCTGCTTCTTCACCCCTACATCACGAACCTCCACCACCCTTACTAAAAACCAACAACAACCAGATTCTTGAAGTGAAAAGTCCAATAAAGCAAAGCAAATCAGATAAGCAAATAAAGAATGGTGAATGTGACAAGGCATACCTAGATGAACTGGTAGAGCTTCACAGAAGGTTAATGACATTGAGAGAAAGACACATTCTGCAGCAGATCGTGAACCTTATAGAAGAAACTGGACACTTTCATATCACAAACACAACATTTGATTTTGATCTTTGCTCGCTGGACAAAACCACAGTCCGTAAACTACAGAGTTACCTGGAAACATCTGGAACATCCTGA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKEKPPPVNKQENAGTLNILSTLSNGNSSKQKIPADGVHRIRVDFKSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 30427 WDR36::NREP-AS1 ENSG00000134987.13::ENSG00000250095.5 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA WDR36 ENSG00000134987.13 protein_coding + + chr5:111092321-111130502:+ chr5:111102399:+ chr5:110428019-110466200:+ chr5:110438098:+ NREP-AS1 ENSG00000250095.5 lncRNA + + chr5:111912508-112017309:+ chr5:111940037:+ chr5:111248205-111353006:+ chr5:111275734:+ chr5:111102619,chr5:111102620 chr5:111925210,chr5:111925208 NA NA chr5:110438318,chr5:110438319 chr5:111260907,chr5:111260905 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.78Mb] 31 15 31 15 ONLY_REF_SPLICE YES_LDAS 0.7017 GT 1.9656 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30431 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1096 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr9:5.83Mb] 20 22 20 8.52 ONLY_REF_SPLICE YES_LDAS 0.4351 GT 1.3996 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30433 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1102 TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:127958362 chr8:127738031 NA NA chr8:128970608 chr8:128750277 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_INVERSION:+:-:[60566] 8 15 8 4.62 ONLY_REF_SPLICE YES_LDAS 0.1925 GT 1.8295 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30436 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1099 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22118644:+ chr9:21994138-22128102:+ chr9:22118643:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr9:5.83Mb] 6 16 6 1.54 ONLY_REF_SPLICE YES_LDAS 0.115 GT 1.3996 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30437 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1098 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22097258:+ chr9:21994138-22128102:+ chr9:22097257:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr9:5.83Mb] 6 29 6 5.92 ONLY_REF_SPLICE YES_LDAS 0.1818 GT 1.3996 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30438 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE FALSE TRUE 1101 TRUE 1951 TRUE 756 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_INVERSION:+:-:[60566] 6 19 6 9.42 ONLY_REF_SPLICE YES_LDAS 0.2352 GT 1.7056 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30440 ABCD4::ZFYVE1 ENSG00000119688.21::ENSG00000165861.14 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ABCD4 ENSG00000119688.21 protein_coding - - chr14:74285269-74303055:- chr14:74288207:- chr14:74751972-74769758:- chr14:74754910:- ZFYVE1 ENSG00000165861.14 protein_coding - - chr14:72969451-73027131:- chr14:72993357:- chr14:73436159-73493839:- chr14:73460065:- chr14:74287816,chr14:74287816,chr14:74287819 chr14:72995595,chr14:72995591,chr14:72995595 NA NA chr14:74754519,chr14:74754519,chr14:74754522 chr14:73462303,chr14:73462299,chr14:73462303 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AAA_25|8-45|0.00024^RsgA_GTPase|14-65|0.00012^TsaE|14-46|0.00017^nSTAND1|14-43|0.00025^ABC_tran|15-121|7.1e-12^ATP-synt_ab|17-43|0.00028^Sigma54_activat|19-44|0.00041^AAA_29|20-42|2.5e-05^AAA_7|20-43|5.1e-05^DLIC|20-55|0.00043^nSTAND3|21-45|3.8e-05^ATPase|22-40|0.00024^PIF1|22-49|0.00026^FtsK_SpoIIIE|22-45|0.0004^AAA_16|23-89|3.5e-07^TrwB_AAD_bind|23-44|0.00044^AAA_30|24-59|8.4e-06^AAA_22|24-46|1.5e-05^AAA_19|24-53|0.00027^T2SSE|26-45|7.3e-05^AAA_23|27-44|6.3e-05^NACHT|28-57|7.9e-05^HerA_C|29-47|0.0003 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:1.26Mb] 4 11 4 6.45 ONLY_REF_SPLICE YES_LDAS 0.1594 GT 1.8295 AG 1.9656 ENST00000481348.5 1-450 ENST00000553891.5 989-2370 chr14|-|[0]74288207-74288259[2]|[1]74288660-74288765[1]|[0]74289483-74289519[0]|[2]74290027-74290118[1]|[0]74290291-74290452[1]<==>chr14|-|[2]72969710-72969756[1]|[0]72970893-72971114[1]|[0]72974080-72974193[1]|[0]72974779-72974959[0]|[2]72975551-72975721[0]|[2]72977927-72978044[2]|[1]72978137-72978234[0]|[2]72978861-72978969[2]|[1]72981789-72981895[0]|[2]72993143-72993357[1] ttgagcgggtctccatctctgccccctcctctgacaaacccctaatcaaggatctgagcctaaagatctccgagggacagagcctgctcatcacaggcaacacgggcactggcaagacctccttgctccgggttctgggtggcctctggacgagtacacggggctcagtgcagatgctgacggactttgggccccatggggtgctattcctgccacaaaagccattcttcactgacgggacccttcgggagcaggtgatatatcccctgaaggaggtctaccccgactcaggttctgccgatgatgagaggatcttgaggttcttggaattggcaggcctggtaagtggggagagggaccctcaggacccgagcccacctgggagcaccagctacagtccaacttggtggcaaggacagagggcctggaccagcaggtggactggaactgATCATCCCTCAGAGGTGCCAGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGTTTCCCTGAAGCCTTTAGTTCCATTCACTACAAGGGAACGAGGACTTACAACCCTCCCACGGACTTTTCTGGGCTTCGGCGTGCTTTGGAGCAGCTACTAGAGAATAACACCACCCGTTCTCCCCGGCACCCGGGAGTCATCTTCAAAGCCCTGAAGGCACTAAGTGACCGCTTCAGCGGTGAGATCCCCGATGACCAGATGGCGCACAGCTCCTTTTTTCCAGATGAGTATTTCACCTGCTCCTCCTTGTGCCTCAGCTGTGGGGTTGGATGTAAGAAAAGCATGAATCATGGGAAGGAAGGAGTGCCTCATGAAGCCAAGAGCCGCTGCAGATACTCCCACCAGTATGACAACCGAGTGTATACCTGCAAGGCCTGCTATGAGAGAGGCGAGGAAGTCAGTGTAGTGCCCAAAACATCTGCTTCCACTGACTCCCCCTGGATGGGTCTCGCAAAATATGCCTGGTCTGGGTATGTGATCGAATGTCCTAACTGTGGCGTGGTCTATCGTAGTCGGCAGTACTGGTTTGGAAACCAAGATCCTGTGGATACGGTGGTGCGGACAGAGATTGTGCATGTGTGGCCTGGAACTGATGGGTTTCTGAAGGACAACAACAATGCTGCCCAGCGCCTGTTGGACGGGATGAACTTCATGGCTCAGTCGGTGTCCGAGCTTAGCCTTGGACCCACCAAGGCTGTGACTTCCTGGCTGACAGACCAGATCGCCCCTGCCTACTGGAGGCCCAACTCCCAGATTCTGAGCTGCAACAAGTGTGCGACGTCCTTTAAAGATAACGACACTAAGCATCACTGCCGAGCCTGTGGGGAGGGCTTCTGTGACAGCTGTTCATCAAAGACTCGGCCAGTGCCTGAGCGGGGCTGGGGCCCTGCGCCAGTGCGGGTCTGTGACAACTGCTACGAAGCCAGGAACGTCCAGTTAGCTGTTACCGAGGCACAAGTGGACGATGAAGGTGGAACGCTCATTGCTCGGAAGGTGGGCGAGGCCGTGCAGAACACTCTGGGAGCCGTGGTGACAGCCATTGACATACCACTAGGTCTGGTAAAGGACGCGGCCAGGCCTGCGTACTGGGTGCCTGACCACGAAATCCTCCACTGCCACAACTGCCGGAAGGAGTTCAGCATCAAGCTCTCCAAGCACCACTGCCGGGCCTGCGGACAGGGCTTCTGTGATGAGTGCTCCCATGACCGCCGGGCTGTTCCTTCTCGTGGCTGGGACCATCCCGTCCGAGTCTGCTTCAACTGCAATAAAAAGCCCGCCTGGACATCTCTGTCTGTCATGACTGGAAAGGGCCCGTTGTGCTGA ERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLVSGERDPQDPSPPGSTSYSPTWWQGQRAWTSRWTGTDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSSLCLSCGVGCKKSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGEEVSVVPKTSASTDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARKVGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRACGQGFCDECSHDRRAVPSRGWDHPVRVCFNCNKKPAWTSLSVMTGKGPLC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30441 ACER2::TEK ENSG00000177076.6::ENSG00000120156.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1103 FALSE NA FALSE NA ACER2 ENSG00000177076.6 protein_coding + + chr9:19409009-19452505:+ chr9:19424841:+ chr9:19409007-19452503:+ chr9:19424839:+ TEK ENSG00000120156.22 protein_coding + + chr9:27109141-27230174:+ chr9:27172616:+ chr9:27109139-27230172:+ chr9:27172614:+ chr9:19430084,chr9:19430081 chr9:27170341,chr9:27170331 NA NA chr9:19430082,chr9:19430079 chr9:27170339,chr9:27170329 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ceramidase|13-261|2.1e-64 fn3_2-PARTIAL|~629-630|0.8^fn3|640-722|2.4e-17^fn3_2|640-713|2.5e-05^Pur_ac_phosph_N|642-721|1.6e-07^I-set|676-693|6.4^PK_Tyr_Ser-Thr|824-1091|6.1e-94^Pkinase|827-1089|9.7e-48^APH|862-918|1.1^DUF4702|871-922|0.00019^Pkinase_fungal|936-975|0.00029^APH|939-985|0.00031^Haspin_kinase|959-989|0.00017 ["TEK:Oncogene"];INTRACHROMOSOMAL[chr9:7.66Mb] 3 4 3 4 ONLY_REF_SPLICE YES_LDAS 0.1068 GT 1.9899 AG 1.9086 ENST00000340967.3 1-365 ENST00000380036.10 629-3375 chr9|+|[0]19409085-19409192[2]|[0]19423862-19423976[0]|[1]19424700-19424841[1]<==>chr9|+|[1]27172616-27172747[0]|[1]27173222-27173362[0]|[1]27180240-27180368[0]|[1]27183459-27183610[2]|[0]27185485-27185629[0]|[1]27190529-27190690[0]|[1]27192489-27192623[0]|[1]27197315-27197599[0]|[1]27202820-27203119[0]|[1]27204911-27205065[2]|[0]27206582-27206792[0]|[1]27209121-27209231[0]|[1]27212707-27212897[2]|[0]27213484-27213597[2]|[0]27217688-27217758[1]|[2]27218777-27218817[0]|[1]27220049-27220145[1]|[2]27228206-27228305[2]|[0]27229158-27229232[2] atgggcgccccgcactggtgggaccagctgcaggctggtagctcggaggtggactggtgcgaggacaactacaccatcgtgcctgctatcgccgagttctacaacacgatcagcaatgtcttatttttcattttaccgcccatctgcatgtgcttgtttcgtcagtatgcaacatgcttcaacagtggcatctacttaatctggactcttttggttgtagtgggaattggatccgtctacttccatgcaacccttagtttcttgggtcagatgcttgatgaacttgcagtcctttgggttctgatgtgtgctttggccatgtggttccccagaaggtatctaccaaagatctttcggaatgaccgGATGTGAAGCCCAGAAGTGGGGACCTGAATGCAACCATCTCTGTACTGCTTGTATGAACAATGGTGTCTGCCATGAAGATACTGGAGAATGCATTTGCCCTCCTGGGTTTATGGGAAGGACGTGTGAGAAGGCTTGTGAACTGCACACGTTTGGCAGAACTTGTAAAGAAAGGTGCAGTGGACAAGAGGGATGCAAGTCTTATGTGTTCTGTCTCCCTGACCCCTATGGGTGTTCCTGTGCCACAGGCTGGAAGGGTCTGCAGTGCAATGAAGCATGCCACCCTGGTTTTTACGGGCCAGATTGTAAGCTTAGGTGCAGCTGCAACAATGGGGAGATGTGTGATCGCTTCCAAGGATGTCTCTGCTCTCCAGGATGGCAGGGGCTCCAGTGTGAGAGAGAAGGCATACAGAGGATGACCCCAAAGATAGTGGATTTGCCAGATCATATAGAAGTAAACAGTGGTAAATTTAATCCCATTTGCAAAGCTTCTGGCTGGCCGCTACCTACTAATGAAGAAATGACCCTGGTGAAGCCGGATGGGACAGTGCTCCATCCAAAAGACTTTAACCATACGGATCATTTCTCAGTAGCCATATTCACCATCCACCGGATCCTCCCCCCTGACTCAGGAGTTTGGGTCTGCAGTGTGAACACAGTGGCTGGGATGGTGGAAAAGCCCTTCAACATTTCTGTTAAAGTTCTTCCAAAGCCCCTGAATGCCCCAAACGTGATTGACACTGGACATAACTTTGCTGTCATCAACATCAGCTCTGAGCCTTACTTTGGGGATGGACCAATCAAATCCAAGAAGCTTCTATACAAACCCGTTAATCACTATGAGGCTTGGCAACATATTCAAGTGACAAATGAGATTGTTACACTCAACTATTTGGAACCTCGGACAGAATATGAACTCTGTGTGCAACTGGTCCGTCGTGGAGAGGGTGGGGAAGGGCATCCTGGACCTGTGAGACGCTTCACAACAGCTTCTATCGGACTCCCTCCTCCAAGAGGTCTAAATCTCCTGCCTAAAAGTCAGACCACTCTAAATTTGACCTGGCAACCAATATTTCCAAGCTCGGAAGATGACTTTTATGTTGAAGTGGAGAGAAGGTCTGTGCAAAAAAGTGATCAGCAGAATATTAAAGTTCCAGGCAACTTGACTTCGGTGCTACTTAACAACTTACATCCCAGGGAGCAGTACGTGGTCCGAGCTAGAGTCAACACCAAGGCCCAGGGGGAATGGAGTGAAGATCTCACTGCTTGGACCCTTAGTGACATTCTTCCTCCTCAACCAGAAAACATCAAGATTTCCAACATTACACACTCCTCAGCTGTGATTTCTTGGACAATATTGGATGGCTATTCTATTTCTTCTATTACTATCCGTTACAAGGTTCAAGGCAAGAATGAAGACCAGCACGTTGATGTGAAGATAAAGAATGCCACCATCACTCAGTATCAGCTCAAGGGCCTAGAGCCTGAAACAGCATACCAGGTGGACATTTTTGCAGAGAACAACATAGGGTCAAGCAACCCAGCCTTTTCTCATGAACTGGTGACCCTCCCAGAATCTCAAGCACCAGCGGACCTCGGAGGGGGGAAGATGCTGCTTATAGCCATCCTTGGCTCTGCTGGAATGACCTGCCTGACTGTGCTGTTGGCCTTTCTGATCATATTGCAATTGAAGAGGGCAAATGTGCAAAGGAGAATGGCCCAAGCCTTCCAAAACGTGAGGGAAGAACCAGCTGTGCAGTTCAACTCAGGGACTCTGGCCCTAAACAGGAAGGTCAAAAACAACCCAGATCCTACAATTTATCCAGTGCTTGACTGGAATGACATCAAATTTCAAGATGTGATTGGGGAGGGCAATTTTGGCCAAGTTCTTAAGGCGCGCATCAAGAAGGATGGGTTACGGATGGATGCTGCCATCAAAAGAATGAAAGAATATGCCTCCAAAGATGATCACAGGGACTTTGCAGGAGAACTGGAAGTTCTTTGTAAACTTGGACACCATCCAAACATCATCAATCTCTTAGGAGCATGTGAACATCGAGGCTACTTGTACCTGGCCATTGAGTACGCGCCCCATGGAAACCTTCTGGACTTCCTTCGCAAGAGCCGTGTGCTGGAGACGGACCCAGCATTTGCCATTGCCAATAGCACCGCGTCCACACTGTCCTCCCAGCAGCTCCTTCACTTCGCTGCCGACGTGGCCCGGGGCATGGACTACTTGAGCCAAAAACAGTTTATCCACAGGGATCTGGCTGCCAGAAACATTTTAGTTGGTGAAAACTATGTGGCAAAAATAGCAGATTTTGGATTGTCCCGAGGTCAAGAGGTGTATGTGAAAAAGACAATGGGAAGGCTCCCAGTGCGCTGGATGGCCATCGAGTCACTGAATTACAGTGTGTACACAACCAACAGTGATGTATGGTCCTATGGTGTGTTACTATGGGAGATTGTTAGCTTAGGAGGCACACCCTACTGCGGGATGACTTGTGCAGAACTCTACGAGAAGCTGCCCCAGGGCTACAGACTGGAGAAGCCCCTGAACTGTGATGATGAGGTGTATGATCTAATGAGACAATGCTGGCGGGAGAAGCCTTATGAGAGGCCATCATTTGCCCAGATATTGGTGTCCTTAAACAGAATGTTAGAGGAGCGAAAGACCTACGTGAATACCACGCTTTATGAGAAGTTTACTTATGCAGGAATTGACTGTTCTGCTGAAGAAGCGGCCTAG MGAPHWWDQLQAGSSEVDWCEDNYTIVPAIAEFYNTISNVLFFILPPICMCLFRQYATCFNSGIYLIWTLLVVVGIGSVYFHATLSFLGQMLDELAVLWVLMCALAMWFPRRYLPKIFRNDRM*SPEVGT*MQPSLYCLYEQWCLP*RYWRMHLPSWVYGKDV*EGL*TAHVWQNL*RKVQWTRGMQVLCVLSP*PLWVFLCHRLEGSAVQ*SMPPWFLRARL*A*VQLQQWGDV*SLPRMSLLSRMAGAPV*ERRHTEDDPKDSGFARSYRSKQW*I*SHLQSFWLAATY**RNDPGEAGWDSAPSKRL*PYGSFLSSHIHHPPDPPP*LRSLGLQCEHSGWDGGKALQHFC*SSSKAPECPKRD*HWT*LCCHQHQL*ALLWGWTNQIQEASIQTR*SL*GLATYSSDK*DCYTQLFGTSDRI*TLCATGPSWRGWGRASWTCETLHNSFYRTPSSKRSKSPA*KSDHSKFDLATNISKLGR*LLC*SGEKVCAKK*SAEY*SSRQLDFGAT*QLTSQGAVRGPS*SQHQGPGGME*RSHCLDP**HSSSSTRKHQDFQHYTLLSCDFLDNIGWLFYFFYYYPLQGSRQE*RPAR*CEDKECHHHSVSAQGPRA*NSIPGGHFCREQHRVKQPSLFS*TGDPPRISSTSGPRRGEDAAYSHPWLCWNDLPDCAVGLSDHIAIEEGKCAKENGPSLPKREGRTSCAVQLRDSGPKQEGQKQPRSYNLSSA*LE*HQISRCDWGGQFWPSS*GAHQEGWVTDGCCHQKNERICLQR*SQGLCRRTGSSL*TWTPSKHHQSLRSM*TSRLLVPGH*VRAPWKPSGLPSQEPCAGDGPSICHCQ*HRVHTVLPAAPSLRCRRGPGHGLLEPKTVYPQGSGCQKHFSW*KLCGKNSRFWIVPRSRGVCEKDNGKAPSALDGHRVTELQCVHNQQ*CMVLWCVTMGDC*LRRHTLLRDDLCRTLREAAPGLQTGEAPEL***GV*SNETMLAGEAL*EAIICPDIGVLKQNVRGAKDLREYHAL*EVYLCRN*LFC*RSGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Angiopoietin-1 receptor TK Tie Q02763 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30442 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1097 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22096372:+ chr9:21994138-22128102:+ chr9:22096371:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr9:5.83Mb] 3 33 3 6.18 ONLY_REF_SPLICE YES_LDAS 0.1401 GT 1.3996 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30443 LINGO2::CDKN2B-AS1 ENSG00000174482.11::ENSG00000240498.9 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE TRUE TRUE 1100 TRUE 1950 TRUE 755 LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:29212090:- chr9:27937615-29213599:- chr9:29212088:- CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22092308:+ chr9:21994138-22128102:+ chr9:22092307:+ chr9:29146840 chr9:22089571 NA NA chr9:29146838 chr9:22089570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr9:5.83Mb] 3 34 3 9.23 ONLY_REF_SPLICE YES_LDAS 0.1866 GT 1.3996 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30446 PVT1::MYC ENSG00000249859.14::ENSG00000136997.22 MSTO211H SRR8615700 SRR8652134 PLEURA mesothelioma metastasis star-fusion TRUE FALSE TRUE 1105 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128155419:+ chr8:128806772-129199347:+ chr8:129167665:+ MYC ENSG00000136997.22 protein_coding + + chr8:127735434-127742951:+ chr8:127738248:+ chr8:128747680-128755197:+ chr8:128750494:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["MYC:Oncogene","MYC:OncomapV4_panel","MYC:FoundationOne_panel","MYC:ArcherDX_panel"];["ChimerPub","DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr8:0.05Mb];LOCAL_REARRANGEMENT:+:[53099] 1 17 1 6.01 ONLY_REF_SPLICE YES_LDAS 0.107 GT 1.7968 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-myc myelocytomatosis viral oncogene homolog (avian) 1 Yes B-CLL, breast cancer, Burkitt lymphoma, gastric cancer, ovarian cancer leukaemia_lymphoma, epithelial oncogene, fusion amplification, translocation 30449 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE FALSE FALSE NA TRUE 4794 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 42 66 42 16.9 ONLY_REF_SPLICE YES_LDAS 0.6618 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30453 RAD18::EML6 ENSG00000070950.10::ENSG00000214595.13 KNS81 SRR8615708 SRR8652069 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1108 FALSE NA FALSE NA RAD18 ENSG00000070950.10 protein_coding - - chr3:8775402-8963773:- chr3:8890389:- chr3:8817088-9005457:- chr3:8932073:- EML6 ENSG00000214595.13 protein_coding + + chr2:54723499-54972025:+ chr2:54948882:+ chr2:54950636-55199161:+ chr2:55176019:+ chr3:8879110,chr3:8879114 chr2:54929061,chr2:54929057 NA NA chr3:8920794,chr3:8920798 chr2:55156198,chr2:55156194 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-RING_6|19-81|8.4e-08^zf-Nse|23-63|0.0043^zf-C3HC4_2|24-63|2.8e-11^zf-RING_2|24-63|7e-08^zf-C3HC4_3|24-67|1.1e-06^zf-RING_5|24-63|1.3e-06^zf-C3HC4|25-63|1.4e-09^zf-RING_UBOX|25-61|1.2e-06^zf-RING_10|25-64|0.00029^Sina_RING|25-63|0.00016^zf-rbx1|36-63|2e-05^Rad50_zn_hook|55-63|1.5^zf-WRNIP1_ubi|58-63|1.6^zf-Nse|194-207|0.03^Rad50_zn_hook|196-217|0.00062^CpG_bind_C|197-239|5.1e-06^zf-C3HC4|199-207|0.66^zf-C3HC4_3|200-211|0.14^zf-RING_5|200-208|0.42^zf-WRNIP1_ubi|201-220|1.3e-06^zf-rbx1|201-207|2.8^zf-C3HC4_2|203-207|0.97^zf-RING_6|203-223|0.14^zf-RING_2|203-207|0.49^zf-RING_UBOX|204-207|4.7^Sina_RING|204-207|1.5^SAP|248-281|6.3e-15^LEM|251-266|7.1e-05^CpG_bind_C|274-340|1.1^PhoU_div|279-375|1.1e-05^CpG_bind_C|327-388|2^Rad50_zn_hook|332-351|0.6^CpG_bind_C|369-423|0.63 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr2] 26 13 26 13 ONLY_REF_SPLICE YES_LDAS 0.4382 GT 1.8295 AG 1.8295 ENST00000264926.7 1-1385 ENST00000356458.8 4005-5877 chr3|-|[1]8890389-8890451[2]|[1]8898894-8899047[1]|[0]8902380-8902520[1]|[0]8912312-8912372[0]|[2]8913644-8913720[1]|[0]8935871-8936055[2]|[1]8939554-8939653[1]|[0]8941467-8941804[2]|[1]8947220-8947290[0]|[2]8948509-8948570[1]|[0]8958920-8959001[0]|[2]8963335-8963385[0]<==>chr2|+|[2]54948882-54948960[2]|[0]54950650-54950779[0]|[1]54952594-54952692[0]|[1]54953983-54954156[0]|[1]54957790-54957998[2]|[0]54959104-54959261[1]|[2]54960220-54960334[2]|[0]54962523-54962711[2]|[0]54963986-54964158[1]|[2]54964571-54964733[2]|[0]54967000-54967103[1]|[2]54968128-54968281[2]|[0]54968668-54968768[1]|[2]54970071-54970095[2] atggactccctggccgagtctcggtggcctccgggcctggcagtcatgaagacaatagatgatttgctgcggtgtggaatttgcttcgagtatttcaacattgcaatgataatacctcagtgttcacataactactgctctctctgtataagaaaatttctgtcctataaaactcagtgtccaacttgctgtgtgactgtcacagagccggatctgaaaaataaccgcatattagatgaactggtaaaaagcttgaattttgcacggaatcatctgctgcagtttgctttagagtcaccagccaaatctcctgcttcttcctcttcaaagaatcttgctgtcaaagtatatactcctgtagcctccagacagtctttaaagcaggggagcaggttaatggataatttcttgatcagagaaatgagtggttctacatcagagttgttgataaaagaaaataaaagcaaattcagccctcaaaaagaggcgagccctgctgcaaagaccaaagagacacgttctgtagaagagatcgctccagatccctcagaggctaagcgtcctgagccaccctcgacatccactttgaaacaagttactaaagtggattgtcctgtttgcggggttaacattccagaaagtcacattaataagcatttagacagctgtttatcacgcgaagagaagaaggaaagcctcagaagttctgttcacaaaaggaagccgctgcccaaaactgtatataatttgctctctgatcgtgatttaaagaaaaagctaaaagagcatggattatctattcaaggaaataaacaacagctcattaaaaggcaccaagaatttgtacacatgtacaatgcccaatgcgatgctttgcatcctaaatcagctgctgaaatagttcgagaaatcgaaaatatagagaagactaggatgcgtcttgaagctagtaaactcaatgaaagtgtaatggtttttacaaaggaccaaacagaaaaggaaatagatgaaatccacagtaaatatcgtaaaaaacataagagtgaatttcagcttctggtggatcaggctagaaaaggatacaagaaaattgctggaatgtcacaaaaaacagtaacaataacaaaagaagatgaatctacagaaaagctatcttctgtatgcatgggacaggaagataatatgacctcagtaacaaaccacttttctcaatcaaagctggactccccagaggaattggaacctgacagagaagaggattcttctagctgtattgatattcaagaagttctttcttcatcagaatcagattcatgcaatagttccagttcagacatcataagagatcttttagaagaagaggaagcctgggaagcatcacataaACCACCCGTTAGCCGAGCAGCTCCCCAGCCTGAGAAACTGCAGAAGAACAATATCACCAAAAAAAAGAAACTGGTTGAGGAGCTGGCTCTAGACCACGTGTTTGGCTACAGAGGTTTCGACTGTCGAAATAACCTGCATTACCTTAATGATGGCGCTGACATCATCTTCCACACAGCAGCGGCTGGCATCGTTCAGAACCTCTCCACAGGGAGCCAGAGCTTCTATCTGGAGCACACAGATGACATCCTCTGTCTCACAGTGAACCAGCACCCCAAGTACAGAAACGTGGTGGCCACCAGCCAGATAGGGACAACACCTTCCATCCACATATGGGACGCCATGACCAAACACACCCTCTCCATGCTGCGGTGCTTCCACTCCAAGGGGGTGAATTACATCAACTTCAGTGCAACTGGAAAGCTCCTGGTGTCGGTGGGAGTGGACCCTGAGCACACCATCACTGTCTGGCGATGGCAGGAAGGTGCCAAGGTTGCCAGCCGAGGGGGTCACCTGGAGCGCATATTTGTGGTGGAATTTCGCCCCGACTCAGACACGCAGTTTGTATCTGTCGGGGTCAAACATATGAAGTTCTGGACCCTGGCAGGCAGCGCCTTGCTTTACAAGAAAGGGGTCATCGGGTCCCTGGGAGCTGCCAAAATGCAGACGATGCTCTCCGTGGCCTTCGGTGCTAACAATCTCACTTTCACGGGTGCCATCAATGGAGATGTCTACGTCTGGAAGGACCACTTCCTCATCCGGCTGGTGGCCAAGGCTCACACAGGCCCCGTGTTCACAATGTACACAACCCTTCGGGATGGACTCATAGTGACCGGCGGAAAAGAGAGGCCGACCAAAGAAGGAGGTGCTGTAAAATTGTGGGACCAGGAGATGAAGCGCTGCCGGGCCTTTCAGCTGGAGACCGGGCAGCTGGTGGAGTGTGTGCGCTCCGTGTGCCGTGGAAAAGGAAAAATCTTAGTGGGAACCAAAGACGGAGAAATAATTGAAGTTGGTGAAAAAAATGCTGCTTCTAACATCCTGATTGATGGTCACATGGAAGGGGAGATCTGGGGCCTGGCCACTCACCCTTCCAAGGACCTCTTCATCTCTGCCAGCAACGATGGCACAGCCCGGATCTGGGACCTGGCTGACAAGAAGCTGTTAAACAAGGTGAGCTTGGGCCATGCGGCCAGGTGTGCAGCCTACAGCCCTGATGGGGAGATGGTGGCCATTGGCATGAAGAATGGAGAGTTTGTCATCTTGTTGGTGAACAGCCTGAAAGTTTGGGGGAAAAAACGAGACCGGAAATCTGCTATCCAAGATATCAGAATCAGCCCAGACAACCGATTCTTAGCCGTTGGTTCTTCTGAACACACAGTTGACTTCTATGACCTCACTCAGGGCACAAATCTGAACCGCATTGGCTACTGCAAAGATATCCCAAGCTTTGTCATTCAGATGGATTTTTCTGCGGATGGCAAATACATTCAGGTGTCAACAGGTGCCTATAAGCGCCAGGTGCATGAGGTCCCCCTGGGGAAGCAGGTAACTGAAGCCGTGGTCATTGAGAAGATCACCTGGGCCTCCTGGACAAGCGTCCTGGGAGATGAAGTCATTGGAATCTGGCCACGAAATGCAGACAAGGCTGATGTCAACTGCGCATGTGTGACCCACGCTGGCCTGAACATTGTCACAGGAGATGACTTTGGGCTGGTGAAGCTCTTTGATTTTCCATGCACAGAAAAATTTGCCAAACATAAGCGATACTTCGGTCACTCGGCTCACGTGACGAACATCCGTTTCTCTTATGATGACAAGTATGTGGTCAGCACTGGAGGAGACGACTGCAGTGTATTTGTGTGGCGATGTCTGTAA MDSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHLLQFALESPAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDNFLIREMSGSTSELLIKENKSKFSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKRKPLPKTVYNLLSDRDLKKKLKEHGLSIQGNKQQLIKRHQEFVHMYNAQCDALHPKSAAEIVREIENIEKTRMRLEASKLNESVMVFTKDQTEKEIDEIHSKYRKKHKSEFQLLVDQARKGYKKIAGMSQKTVTITKEDESTEKLSSVCMGQEDNMTSVTNHFSQSKLDSPEELEPDREEDSSSCIDIQEVLSSSESDSCNSSSSDIIRDLLEEEEAWEASHKPPVSRAAPQPEKLQKNNITKKKKLVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAAKMQTMLSVAFGANNLTFTGAINGDVYVWKDHFLIRLVAKAHTGPVFTMYTTLRDGLIVTGGKERPTKEGGAVKLWDQEMKRCRAFQLETGQLVECVRSVCRGKGKILVGTKDGEIIEVGEKNAASNILIDGHMEGEIWGLATHPSKDLFISASNDGTARIWDLADKKLLNKVSLGHAARCAAYSPDGEMVAIGMKNGEFVILLVNSLKVWGKKRDRKSAIQDIRISPDNRFLAVGSSEHTVDFYDLTQGTNLNRIGYCKDIPSFVIQMDFSADGKYIQVSTGAYKRQVHEVPLGKQVTEAVVIEKITWASWTSVLGDEVIGIWPRNADKADVNCACVTHAGLNIVTGDDFGLVKLFDFPCTEKFAKHKRYFGHSAHVTNIRFSYDDKYVVSTGGDDCSVFVWRCL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30464 ENSG00000291073::GNPTG ENSG00000291073.1::ENSG00000090581.11 KNS62 SRR8615709 SRR8652070 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1109 FALSE NA FALSE NA ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- GNPTG ENSG00000090581.11 protein_coding + + chr16:1351931-1365737:+ chr16:1361743:+ chr16:1401932-1415738:+ chr16:1411744:+ chr16:21503072,chr16:21503075 chr16:1354751,chr16:1354748 NA NA chr16:21514393,chr16:21514396 chr16:1404752,chr16:1404749 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 70 54 70 54 ONLY_REF_SPLICE YES_LDAS 1.8988 GT 1.6729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30472 HDHD5::MIAT ENSG00000069998.12::ENSG00000225783.9 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA HDHD5 ENSG00000069998.12 protein_coding - - chr22:17137511-17165287:- chr22:17159126:- chr22:17618401-17646177:- chr22:17640016:- MIAT ENSG00000225783.9 lncRNA + + chr22:26646411-26676475:+ chr22:26663316:+ chr22:27042375-27072438:+ chr22:27059280:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HDHD5:Oncogene"];["CCLE_StarF2019"] 126 1 126 1 ONLY_REF_SPLICE YES_LDAS 1.3339 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30473 UBE2L3::CPNE2 ENSG00000185651.16::ENSG00000140848.17 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE FALSE NA TRUE 1977 TRUE 763 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21567771:+ chr22:21903736-21978323:+ chr22:21922060:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57110708:+ chr16:57126495-57182281:+ chr16:57144620:+ chr22:21575256,chr22:21575254 chr16:57103450,chr16:57103445 NA NA chr22:21929545,chr22:21929543 chr16:57137362,chr16:57137357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr16] 69 0 69 0 ONLY_REF_SPLICE YES_LDAS 0.7247 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30474 C22orf39::SULT4A1 ENSG00000242259.9::ENSG00000130540.14 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 1113 FALSE NA FALSE NA C22orf39 ENSG00000242259.9 protein_coding - - chr22:19351368-19447711:- chr22:19397992:- chr22:19338891-19435234:- chr22:19385515:- SULT4A1 ENSG00000130540.14 protein_coding - - chr22:43824509-43862513:- chr22:43841932:- chr22:44220389-44258393:- chr22:44237812:- chr22:19397238,chr22:19397240 chr22:43842086,chr22:43842086 NA NA chr22:19384761,chr22:19384763 chr22:44237966,chr22:44237966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:24.38Mb] 50 32 50 32 ONLY_REF_SPLICE YES_LDAS 0.8612 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30480 UBE2L3::CPNE2 ENSG00000185651.16::ENSG00000140848.17 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 1116 TRUE 1977 TRUE 763 UBE2L3 ENSG00000185651.16 protein_coding + + chr22:21549447-21624034:+ chr22:21567771:+ chr22:21903736-21978323:+ chr22:21922060:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57113288:+ chr16:57126495-57182281:+ chr16:57147200:+ chr22:21575256,chr22:21575254 chr16:57103450,chr16:57103445 NA NA chr22:21929545,chr22:21929543 chr16:57137362,chr16:57137357 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UQ_con-PARTIAL|6-27~|3e-38^RWD-PARTIAL|10-27~|2.7e-08^UEV-PARTIAL|17-27~|7.8e-07 C2-PARTIAL|~181-252|1.7e-17^Copine|326-542|1e-92^VMAP-M1|394-449|0.0001^vWA-TerF-like|411-529|4.3e-08^VWA|416-484|2.2e-05 ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr16] 19 0 19 0 ONLY_REF_SPLICE YES_LDAS 0.1996 GT 1.6895 AG 1.7465 ENST00000696046.1 1-27 ENST00000565874.5 181-1647 chr22|+|[0]21567745-21567771[2]<==>chr16|+|[0]57113288-57113467[2]|[0]57115476-57115550[2]|[0]57117496-57117567[2]|[0]57119195-57119278[2]|[0]57119561-57119650[2]|[0]57121093-57121191[2]|[0]57121674-57121760[2]|[0]57123414-57123473[2]|[0]57125860-57125993[1]|[2]57127849-57127903[2]|[0]57134775-57134826[0]|[1]57137149-57137282[2]|[0]57146085-57146321[2]|[0]57147551-57147658[2] atggcggccagcaggaggctgatgaagTACGACAGGACAGAAACCGCGATCAACAACCTCAACCCCGCCTTCTCCAAGAAGTTCGTGCTTGACTACCACTTCGAGGAGGTACAGAAGCTCAAGTTCGCGCTCTTTGACCAGGACAAGTCCAGTATGCGGCTGGACGAGCATGACTTCCTGGGCCAGTTCTCCTGCAGCCTGGGCACGATCGTCTCCAGCAAGAAGATCACTAGGCCTCTGCTGCTGCTGAATGACAAGCCTGCGGGGAAGGGCTTGATTACGATCGCTGCCCAGGAGCTGTCCGACAACCGCGTCATCACACTAAGCCTGGCGGGCAGGAGGCTGGACAAGAAGGACCTCTTTGGGAAGTCAGACCCCTTTCTGGAGTTTTATAAGCCAGGAGACGATGGCAAGTGGATGCTGGTCCACAGGACTGAGGTGATCAAGTACACACTGGACCCTGTGTGGAAGCCATTCACAGTGCCCTTGGTGTCCCTGTGTGATGGGGACATGGAGAAGCCCATCCAGGTCATGTGCTACGACTATGACAATGACGGGGGCCATGACTTCATCGGCGAGTTCCAGACCTCAGTGTCACAGATGTGTGAGGCTCGAGACAGCGTCCCGCTGGAGTTCGAGTGCATCAACCCCAAGAAGCAGAGGAAGAAGAAGAACTATAAAAACTCGGGCATCATCATCCTGCGATCCTGCAAGATAAACCGAGACTACTCCTTCCTTGACTACATCCTGGGAGGCTGCCAGCTCATGTTCACCGTTGGAATAGACTTTACAGCCTCCAACGGGAATCCCCTCGACCCTTCCTCTTTGCACTATATCAACCCTATGGGCACCAACGAATATCTGTCGGCCATCTGGGCTGTTGGGCAGATCATTCAGGACTACGACAGTGATAAGATGTTTCCAGCTCTGGGATTCGGGGCCCAGTTACCCCCAGACTGGAAGGTCTCCCATGAGTTTGCCATCAACTTCAACCCCACCAACCCCTTCTGCTCAGGTGTGGATGGTATTGCCCAGGCGTACTCAGCTTGCCTGCCCCACATCCGCTTCTACGGTCCTACCAATTTCTCCCCCATCGTCAACCACGTGGCCCGGTTTGCGGCCCAGGCCACACAACAGCGGACGGCCACGCAGTACTTCATCCTCCTCATCATCACGGACGGGGTCATCAGTGACATGGAGGAGACACGGCATGCCGTGGTGCAGGCTTCCAAGCTGCCCATGTCCATCATCATCGTGGGCGTGGGCAATGCGGACTTCGCTGCCATGGAGTTCCTGGATGGGGACAGCCGCATGCTGCGCTCCCACACGGGGGAGGAGGCAGCCCGCGATATTGTGCAGTTCGTTCCCTTTCGAGAGTTCCGCAACGCAGCAAAAGAGACCTTGGCCAAAGCTGTGCTGGCGGAGCTGCCCCAACAAGTTGTGCAGTATTTCAAGCATAAAAACCTGCCCCCCACCAACTCGGAGCCCGCCTGA MAASRRLMKYDRTETAINNLNPAFSKKFVLDYHFEEVQKLKFALFDQDKSSMRLDEHDFLGQFSCSLGTIVSSKKITRPLLLLNDKPAGKGLITIAAQELSDNRVITLSLAGRRLDKKDLFGKSDPFLEFYKPGDDGKWMLVHRTEVIKYTLDPVWKPFTVPLVSLCDGDMEKPIQVMCYDYDNDGGHDFIGEFQTSVSQMCEARDSVPLEFECINPKKQRKKKNYKNSGIIILRSCKINRDYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQRTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDSRMLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPTNSEPA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30483 GRK3::GTPBP1 ENSG00000100077.16::ENSG00000100226.16 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 1115 FALSE NA FALSE NA GRK3 ENSG00000100077.16 protein_coding + + chr22:25564675-25729294:+ chr22:25695214:+ chr22:25960642-26125261:+ chr22:26091181:+ GTPBP1 ENSG00000100226.16 protein_coding + + chr22:38705742-38738299:+ chr22:38715907:+ chr22:39101747-39134304:+ chr22:39111912:+ chr22:25699085 chr22:38714249 NA NA chr22:26095052 chr22:39110254 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RGS|55-174|2.2e-26^HTH_WhiA|78-137|2.3e-05^Pkinase|113-138|1.3^Pkinase|192-453|1.1e-76^PK_Tyr_Ser-Thr|193-436|1.4e-31^Kinase-like|305-436|2.4e-05^Pkinase|524-552|0.041^HTH_WhiA|545-562|3.8^PH|560-649|4.1e-13 GTP_EFTU-PARTIAL|~305-383|6.8e-28^PduV-EutP-PARTIAL|~305-337|0.0015^DO-GTPase2-PARTIAL|~305-327|1.3^PduV-EutP|342-381|0.061^GTP_EFTU_D2|409-479|7.2e-12^GTP_EFTU_D3|489-573|2.2e-07^DO-GTPase2|561-595|3.8^GTP_EFTU_D2|562-575|6.8 ["CCLE_StarF2019"] 14 6 14 6 ONLY_REF_SPLICE YES_LDAS 0.21 GT 1.9656 AG 1.8062 ENST00000324198.11 1-1160 ENST00000216044.10 305-2010 chr22|+|[0]25565041-25565153[1]|[2]25604377-25604453[0]|[1]25644592-25644665[2]|[0]25661576-25661677[2]|[0]25663630-25663704[2]|[0]25667739-25667800[1]|[2]25672296-25672347[2]|[0]25674437-25674528[1]|[2]25678816-25678915[2]|[0]25685170-25685248[0]|[1]25687537-25687667[2]|[0]25690189-25690283[1]|[2]25695107-25695214[1]<==>chr22|+|[1]38715907-38716087[1]|[2]38716652-38717000[2]|[0]38721742-38721865[0]|[1]38724297-38724411[1]|[2]38726006-38726150[2]|[0]38726258-38726440[2]|[0]38727213-38727348[0]|[1]38727983-38728161[2]|[0]38729462-38729662[2]|[0]38730612-38730704[2] atggcggacctggaggctgtgctggccgatgtcagttacctgatggccatggagaagagcaaggcgaccccggccgcccgcgccagcaagaggatcgtcctgccggagcccagtatccggagtgtgatgcagaagtaccttgcagagagaaatgaaataacctttgacaagattttcaatcagaaaattggtttcttgctatttaaagatttttgtttgaatgaaattaatgaagctgtacctcaggtgaagttttatgaagagataaaggaatatgaaaaacttgataatgaggaagaccgcctttgcagaagtcgacaaatttatgatgcctacatcatgaaggaacttctttcctgttcacatcctttctcaaagcaagctgtagaacacgtacaaagtcatttatccaagaaacaagtgacatcaactctttttcagccatacatagaagaaatttgtgaaagccttcgaggtgacatttttcaaaaatttatggaaagtgacaagttcactagattttgtcagtggaaaaacgttgaattaaatatccatttgaccatgaatgagttcagtgtgcataggattattggacgaggaggattcggggaagtttatggttgcaggaaagcagacactggaaaaatgtatgcaatgaaatgcttagataagaagaggatcaaaatgaaacaaggagaaacattagccttaaatgaaagaatcatgttgtctcttgtcagcacaggagactgtcctttcattgtatgtatgacctatgccttccataccccagataaactctgcttcatcctggatctgatgaacgggggcgatttgcactaccacctttcacaacacggtgtgttctctgagaaggagatgcggttttatgccactgaaatcattctgggtctggaacacatgcacaatcggtttgttgtctacagagatttgaagccagcaaatattctcttggatgaacatggacacgcaagaatatcagatcttggtcttgcctgcgatttttccaaaaagaagcctcatgcgagtgttggcacccatgggtacatggctcccgaggtgctgcagaaggggacggcctatgacagcagtgccgactggttctccctgggctgcatgcttttcaaacttctgagaggATGGGACTGAGTATGGGCTGAGTGAAGCTGACATGGAGGCCTCCTACGCCACAGTGAAGAGCATGGCGGAACAGATAGAGGCCGATGTCATCCTTCTGCGGGAACGGCAAGAAGCTGGGGGCCGCGTGCGTGATTACCTGGTCCGGAAACGAGTAGGAGACAATGACTTCCTGGAGGTCAGGGTAGCAGTGGTGGGCAACGTGGATGCTGGCAAAAGCACGCTTCTGGGGGTCCTGACACATGGGGAGCTGGACAATGGCCGAGGCTTTGCCCGCCAGAAACTCTTCCGCCACAAACATGAAATTGAATCTGGTCGCACCAGCAGTGTGGGCAACGACATTCTGGGCTTTGACAGTGAAGGCAATGTAGTGAACAAGCCTGACAGCCACGGCGGCAGCCTGGAGTGGACCAAGATCTGTGAGAAGTCCACGAAAGTCATTACCTTCATCGACTTGGCTGGTCATGAGAAGTACCTGAAAACCACTGTCTTCGGCATGACAGGCCATCTGCCTGACTTCTGCATGCTCATGGTGGGCAGCAATGCTGGCATCGTGGGGATGACCAAAGAACACCTGGGCTTGGCACTGGCACTCAATGTACCTGTCTTTGTGGTAGTCACCAAGATTGACATGTGTCCTGCCAACATCCTGCAAGAAACCCTGAAGCTGTTACAGCGCCTGCTGAAGTCACCAGGCTGCCGGAAGATCCCCGTGCTGGTGCAGAGCAAAGATGATGTGATTGTCACAGCCTCCAACTTCAGCTCTGAAAGGATGTGCCCGATATTCCAGATCTCCAACGTTACAGGCGAGAACCTAGATCTGCTGAAGATGTTCCTCAACCTCCTCTCCCCCCGCACCAGCTACAGGGAGGAGGAGCCTGCTGAGTTTCAGATTGATGACACCTACTCCGTCCCGGGTGTGGGGACAGTGGTTTCGGGGACAACACTGAGAGGCCTGATCAAGCTGAATGACACGCTGCTGCTGGGCCCAGACCCCTTGGGTAACTTCCTGTCCATTGCTGTCAAATCCATCCATCGCAAGCGCATGCCTGTCAAGGAGGTGCGGGGTGGCCAGACAGCATCCTTTGCGCTGAAGAAGATCAAGCGCTCGTCCATCCGGAAGGGCATGGTGATGGTTTCCCCACGTTTGAATCCCCAAGCCTCCTGGGAGTTTGAGGCCGAGATTCTCGTCCTCCACCACCCCACCACAATTAGCCCGCGCTACCAGGCCATGGTGCACTGTGGGAGCATCAGGCAGACAGCCACCATTCTGAGCATGGACAAGGACTGTCTGCGCACTGGGGACAAGGCCACTGTACACTTCCGCTTCATCAAGACCCCTGAGTACCTGCACATAGACCAGCGGCTGGTGTTCCGGGAAGGCCGCACCAAGGCTGTCGGCACCATCACCAAGCTCCTCCAGACCACCAACAACTCCCCAATGAACTCCAAGCCGCAGCAGATTAAAATGCAGTCGACGAAAAAGGGCCCCCTGACGAAACGAGACGAGGGGGGCCCGTCTGGTGGGCCAGCAGTAGGAGCACCCCCACCTGGAGATGAAGCCTCCTCTGTAGGGGCAGGGCAACCAGCTGCGTCCAGCAATCTCCAGCCTCAGCCTAAGCCCAGCAGTGGAGGCCGGCGACGAGGGGGCCAGCGCCACAAGGTGAAGTCCCAGGGGGCCTGTGTGACTCCTGCCAGCGGCTGCTGA MADLEAVLADVSYLMAMEKSKATPAARASKRIVLPEPSIRSVMQKYLAERNEITFDKIFNQKIGFLLFKDFCLNEINEAVPQVKFYEEIKEYEKLDNEEDRLCRSRQIYDAYIMKELLSCSHPFSKQAVEHVQSHLSKKQVTSTLFQPYIEEICESLRGDIFQKFMESDKFTRFCQWKNVELNIHLTMNEFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHARISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGWD*VWAE*S*HGGLLRHSEEHGGTDRGRCHPSAGTARSWGPRA*LPGPETSRRQ*LPGGQGSSGGQRGCWQKHASGGPDTWGAGQWPRLCPPETLPPQT*N*IWSHQQCGQRHSGL*Q*RQCSEQA*QPRRQPGVDQDL*EVHESHYLHRLGWS*EVPENHCLRHDRPSA*LLHAHGGQQCWHRGDDQRTPGLGTGTQCTCLCGSHQD*HVSCQHPARNPEAVTAPAEVTRLPEDPRAGAEQR*CDCHSLQLQL*KDVPDIPDLQRYRREPRSAEDVPQPPLPPHQLQGGGAC*VSD**HLLRPGCGDSGFGDNTERPDQAE*HAAAGPRPLG*LPVHCCQIHPSQAHACQGGAGWPDSILCAEEDQALVHPEGHGDGFPTFESPSLLGV*GRDSRPPPPHHN*PALPGHGALWEHQADSHHSEHGQGLSAHWGQGHCTLPLHQDP*VPAHRPAAGVPGRPHQGCRHHHQAPPDHQQLPNELQAAAD*NAVDEKGPPDETRRGGPVWWASSRSTPTWR*SLLCRGRATSCVQQSPASA*AQQWRPATRGPAPQGEVPGGLCDSCQRLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Beta-adrenergic receptor kinase 2 AGC GRK BARK P35626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30489 HCCS-DT::MID1 ENSG00000234129.10::ENSG00000101871.18 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA HCCS-DT ENSG00000234129.10 lncRNA - - chrX:10847578-11111220:- chrX:11055936:- chrX:10865697-11129340:- chrX:11074056:- MID1 ENSG00000101871.18 protein_coding - - chrX:10445310-10833654:- chrX:10567603:- chrX:10413350-10851773:- chrX:10535643:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MID1:Oncogene"] 7 11 7 5.92 ONLY_REF_SPLICE YES_LDAS 0.1357 GT 1.9219 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30490 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28478814:+ chr3:28390212-28579613:+ chr3:28520305:+ chr3:28266386,chr3:28266385 chr3:28445091,chr3:28445087 NA NA chr3:28307877,chr3:28307876 chr3:28486582,chr3:28486578 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cmc1|19-87|3.8e-22^Ribosomal_S2|22-64|9.9e-05^NDUF_B7|26-65|4.6e-06^F_T4SS_TraN|27-62|4.3e-07^MTCP1|28-44|0.00012^Pet191_N|28-43|0.016^Pet191_N|29-89|0.018^GCK|30-76|0.00022^CHCH|30-42|0.012^CHCH|31-63|0.00015^MTCP1|52-70|0.022^NDUF_B7|74-85|0.12^CHCH|74-79|1.7^NDUF_B7|85-98|0.4 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.02Mb];NEIGHBORS[24004] 6 6 6 4.48 ONLY_REF_SPLICE YES_LDAS 0.1101 GT 1.9219 AG 1.7968 ENST00000466830.6 1-109 ENST00000383768.7 493-1071 chr3|+|[0]28241794-28241812[0]|[1]28263291-28263380[0]<==>chr3|+|[0]28478814-28478931[0]|[1]28492127-28492173[2]|[0]28514064-28514122[1]|[2]28515554-28515621[0]|[1]28520992-28521116[2]|[0]28524527-28524688[2] atggcgctcgaccccgcagaccagcatctcagacatgtcgaaaaagatgttttgatccctaaaataatgagagaaaaggccaaagagaggtgttctgaacaagttcaagCCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAAGCATGTCTACTCTATGGATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCAAAACTACAAGATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGGAAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAGGAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGGTTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAGAAGGACATGGAGAGGAAATAAATATGGGAGAAAAGTTATCTAAATGCAGCCCAGAAGCTCCTGCAGGCAGTCTGTTTGAAAACCACTATGAAGAGGACTATCTTGTAATTGATGGGATAAAATTAAAAGCTGGAGAATGTATTGAGGATATAACTAATAAATTTAAAGAAATAGATGCTTTGATGTCTGAGTTTTAG MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQARKV*E*KEVV*KCTTRSMSTLWIFS*AKTGNVLPIKTTR*IRNT*QSCCTGQEKEADF*K*Y*KEEAQI*KKEKESNFKMLF*KCLF**CLIKGEQGCL*DGSFTKRAGANAAASTATHSHT**IRRRTWRGNKYGRKVI*MQPRSSCRQSV*KPL*RGLSCN*WDKIKSWRMY*GYN**I*RNRCFDV*VL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30491 ZNF354A::COL23A1 ENSG00000169131.13::ENSG00000050767.18 KALS1 SRR8615714 SRR8652068 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF354A ENSG00000169131.13 protein_coding - - chr5:178711512-178730659:- chr5:178725376:- chr5:178138513-178157660:- chr5:178152377:- COL23A1 ENSG00000050767.18 protein_coding - - chr5:178237476-178590393:- chr5:178306919:- chr5:177664477-178017394:- chr5:177733920:- chr5:178723048,chr5:178723051,chr5:178723057 chr5:178560353,chr5:178560353,chr5:178560353 NA NA chr5:178150049,chr5:178150052,chr5:178150058 chr5:177987354,chr5:177987354,chr5:177987354 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB|13-54|5.2e-27^C1_4|207-224|0.02^zf-H2C2_2|211-224|0.0011^HypA|212-250|0.13^zf-C2H2_6|213-237|1.4e-05^zf_UBZ|213-230|0.23^zf-C2H2|214-236|4.4e-07^zf-C2H2_4|214-236|1.9e-06^zf-C2H2_jaz|214-235|6.5e-06^Zn-ribbon_8|214-224|0.16^zf-C2H2_11|214-232|0.37^zf-met|214-233|0.00041^zf-AN1|214-223|0.23^C1_4-PARTIAL|215-256~|0.0054^XPA_N|215-225|0.25^zf-C2HC_2|215-234|1.6e-05^zf-H2C2_2|228-253|2.4e-09^zf-RING_7|237-248|0.52^HypA-PARTIAL|240-256~|0.054^zf-C2HC_2|241-255|0.62^zf-AN1|241-251|0.05^zf-C2H2-PARTIAL|242-256~|3.9e-09^zf-C2H2_4-PARTIAL|242-256~|6.1e-06^zf-C2H2_6-PARTIAL|242-256~|2.4e-06^zf-C2H2_jaz-PARTIAL|242-256~|0.00024^Zn-ribbon_8-PARTIAL|242-256~|0.0022^zf-C2H2_11-PARTIAL|242-256~|0.21^zf-met-PARTIAL|242-256~|0.35^zf_UBZ-PARTIAL|242-256~|0.021^C1_4-PARTIAL|243-256~|0.0037^XPA_N|243-254|0.0062^zf_C2H2_13-PARTIAL|244-256~|1.5 Collagen-PARTIAL|~362-372|2.8e-13^Collagen-PARTIAL|~362-394|8.2e-14^Collagen|412-470|6.7e-14^Collagen|463-520|1.1e-13 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.12Mb] 6 9 6 6.75 ONLY_REF_SPLICE YES_LDAS 0.1339 GT 1.7819 AG 1.5628 ENST00000335815.7 1-256 ENST00000390654.8 362-1623 chr5|-|[0]178725376-178725471[1]|[0]178726999-178727125[0]|[2]178728990-178729022[0]<==>chr5|-|[2]178238698-178238700[0]|[2]178239141-178239179[0]|[2]178242042-178242128[0]|[2]178242341-178242394[0]|[2]178245942-178245968[0]|[2]178246254-178246307[0]|[2]178246391-178246453[0]|[2]178247526-178247552[0]|[2]178247775-178247831[0]|[2]178248192-178248254[0]|[2]178249117-178249206[0]|[2]178250061-178250105[0]|[2]178252544-178252597[0]|[2]178254949-178255026[0]|[2]178256353-178256397[0]|[2]178256866-178256928[0]|[2]178257523-178257567[0]|[2]178259721-178259747[0]|[2]178261722-178261748[0]|[2]178262217-178262252[0]|[2]178263208-178263324[0]|[2]178267307-178267333[0]|[2]178268730-178268756[0]|[2]178270337-178270363[0]|[2]178288324-178288350[0]|[2]178290362-178290369[1]|[0]178306875-178306919[1] atggctgctgggcagcgggaagcgaggccccaggtgtcactgacgtttgaggatgtggctgtgctgtttacccgagatgagtggagaaagctggccccttctcagagaaacttgtaccgggatgtgatgctggagaactataggaacctggtctcactggggctcccatttaccaaaccaaaagtgatctccctgttgcagcaaggagaagatccctgggaggtggagaaagacggttctggcgtctcctctctagGGCCCCCTGGACGGCGCGGCAAGCCTGGGAGAAGAGGCGACCCTGGTCCTCCAGGGCAATCAGGACGAGATGGCTACCCGGGACCCCTGGGTTTGGATGGCAAGCCCGGACTTCCAGGCCCGAAAGGGGAAAAGGGTGCACCAGGAGACTTTGGCCCCCGGGGAGACCAAGGACAAGATGGAGCTGCTGGGCCTCCGGGGCCCCCTGGACCTCCTGGGGCCCGGGGCCCTCCTGGCGACACTGGGAAAGATGGCCCCAGGGGAGCACAAGGCCCAGCGGGCCCCAAAGGAGAGCCCGGACAAGACGGCGAGATGGGCCCAAAGGGACCCCCAGGGCCCAAGGGTGAGCCTGGAGTACCTGGAAAGAAGGGCGACGATGGGACACCAAGCCAGCCTGGACCACCAGGGCCCAAGGGCGAGCCAGGGAGCATGGGGCCTCGGGGAGAGAACGGTGTGGACGGTGCCCCAGGACCGAAGGGGGAGCCTGGCCACCGAGGCACGGATGGAGCTGCAGGGCCCCGGGGTGCCCCAGGCCTCAAGGGCGAGCAGGGAGACACAGTGGTGATCGACTATGATGGCAGGATCTTGGATGCCCTCAAGGGGCCTCCCGGACCACAGGGGCCCCCAGGGCCACCAGGGATCCCTGGAGCCAAGGGCGAGCTTGGATTGCCCGGTGCCCCAGGAATCGATGGAGAGAAGGGCCCCAAAGGACAGAAAGGAGACCCAGGAGAGCCTGGGCCAGCAGGACTCAAAGGGGAAGCAGGCGAGATGGGCTTGTCCGGCCTCCCGGGCGCTGACGGCCTCAAGGGGGAGAAGGGGGAGTCGGCGTCTGACAGCCTACAGGAGAGCCTGGCTCAGCTCATAGTGGAGCCAGGGCCCCCTGGCCCCCCTGGCCCCCCAGGCCCGATGGGCCTCCAGGGAATCCAGGGTCCCAAGGGCTTGGATGGAGCAAAGGGAGAGAAGGGTGCGTCGGGTGAGAGAGGCCCCAGCGGCCTGCCTGGGCCAGTTGGCCCACCGGGCCTTATTGGGCTGCCAGGAACCAAAGGAGAGAAGGGCAGACCCGGGGAGCCAGGACTAGATGGTTTCCCTGGACCCCGAGGAGAGAAAGGTGATCGGAGCGAGCGTGGAGAGAAGGGAGAACGAGGGGTCCCCGGCCGGAAAGGAGTGAAGGGCCAGAAGGGCGAGCCGGGACCACCAGGCCTGGACCAGCCGTGTCCCGTGGGCCCCGACGGGCTGCCTGTGCCTGGCTGCTGGCATAAGTGA MAAGQREARPQVSLTFEDVAVLFTRDEWRKLAPSQRNLYRDVMLENYRNLVSLGLPFTKPKVISLLQQGEDPWEVEKDGSGVSSLGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGEPGHRGTDGAAGPRGAPGLKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPGPAGLKGEAGEMGLSGLPGADGLKGEKGESASDSLQESLAQLIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGASGERGPSGLPGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGERGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30495 NPM1::ALK ENSG00000181163.14::ENSG00000171094.18 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1117 FALSE NA FALSE NA NPM1 ENSG00000181163.14 protein_coding + + chr5:171387116-171411810:+ chr5:171391799:+ chr5:170814120-170838814:+ chr5:170818803:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr5:171392506,chr5:171392503,chr5:171399956 chr2:29225320,chr2:29225323,chr2:29304315 NA NA chr5:170819510,chr5:170819507,chr5:170826960 chr2:29448186,chr2:29448189,chr2:29527181 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nucleoplasmin|18-117|1.5e-42^NPL|18-114|9.8e-07^YL1|120-238|6.3e-05^TFIIF_alpha|122-253|0.0029^NOA36|124-188|8.1e-05^Nop14|126-252|4.5e-05^CDC45|161-233|7e-05^FMP27-BLTP2_C|165-236|0.003^NPM1-C|221-237|0.6^NPM1-C|245-304|8.4e-27 none ["NPM1:Oncogene","NPM1:OncomapV4_panel","NPM1:ArcherDX_panel","NPM1:FoundationOne_panel"];["ALK:Oncogene","ALK:FoundationOne_panel","ALK:ArcherDX_panel"];["Mitelman","ChimerKB","DepMap2023","ChimerSeq","CCLE_StarF2019","Klijn_CellLines","chimerdb_omim","chimerdb_pubmed","ChimerPub","Cosmic"];INTERCHROMOSOMAL[chr5--chr2] 282 148 281.94 147.84 ONLY_REF_SPLICE YES_LDAS 6.7816 GT 1.9656 AG 1.9086 ENST00000677357.1 1-352 ENST00000618119.4 2042-3732 chr5|+|[0]171387949-171388006[0]|[1]171390051-171390130[2]|[0]171391305-171391424[2]|[0]171391706-171391799[0]<==>chr2|-|[2]29193224-29193922[0]|[2]29196770-29196860[2]|[1]29197542-29197676[2]|[1]29207171-29207272[2]|[1]29209786-29209878[2]|[1]29213984-29214081[0]|[2]29220706-29220835[2]|[1]29222344-29222408[0]|[2]29222517-29222607[2]|[1]29223342-29223528[1] atggaagattcgatggacatggacatgagccccctgaggccccagaactatcttttcggttgtgaactaaaggccgacaaagattatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaacggtcagtttaggggctggtgcaaaggatgagttgcacattgttgaagcagaggcaatgaattacgaaggcagtccaattaaagtaacactggcaactttgaaaatgtctgtacagccaacggtttcccttgggggctttgaaataacaccaccagtggtcttaaggttgaagtgtggttcagggccagtgcatattagtggacagcacttagtagTGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCGGGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAACGACCCAAGCCCCCTGCAAGTGGCTGTGAAGACGCTGCCTGAAGTGTGCTCTGAACAGGACGAACTGGATTTCCTCATGGAAGCCCTGATCATCAGCAAATTCAACCACCAGAACATTGTTCGCTGCATTGGGGTGAGCCTGCAATCCCTGCCCCGGTTCATCCTGCTGGAGCTCATGGCGGGGGGAGACCTCAAGTCCTTCCTCCGAGAGACCCGCCCTCGCCCGAGCCAGCCCTCCTCCCTGGCCATGCTGGACCTTCTGCACGTGGCTCGGGACATTGCCTGTGGCTGTCAGTATTTGGAGGAAAACCACTTCATCCACCGAGACATTGCTGCCAGAAACTGCCTCTTGACCTGTCCAGGCCCTGGAAGAGTGGCCAAGATTGGAGACTTCGGGATGGCCCGAGACATCTACAGGGCGAGCTACTATAGAAAGGGAGGCTGTGCCATGCTGCCAGTTAAGTGGATGCCCCCAGAGGCCTTCATGGAAGGAATATTCACTTCTAAAACAGACACATGGTCCTTTGGAGTGCTGCTATGGGAAATCTTTTCTCTTGGATATATGCCATACCCCAGCAAAAGCAACCAGGAAGTTCTGGAGTTTGTCACCAGTGGAGGCCGGATGGACCCACCCAAGAACTGCCCTGGGCCTGTATACCGGATAATGACTCAGTGCTGGCAACATCAGCCTGAAGACAGGCCCAACTTTGCCATCATTTTGGAGAGGATTGAATACTGCACCCAGGACCCGGATGTAATCAACACCGCTTTGCCGATAGAATATGGTCCACTTGTGGAAGAGGAAGAGAAAGTGCCTGTGAGGCCCAAGGACCCTGAGGGGGTTCCTCCTCTCCTGGTCTCTCAACAGGCAAAACGGGAGGAGGAGCGCAGCCCAGCTGCCCCACCACCTCTGCCTACCACCTCCTCTGGCAAGGCTGCAAAGAAACCCACAGCTGCAGAGATCTCTGTTCGAGTCCCTAGAGGGCCGGCCGTGGAAGGGGGACACGTGAATATGGCATTCTCTCAGTCCAACCCTCCTTCGGAGTTGCACAAGGTCCACGGATCCAGAAACAAGCCCACCAGCTTGTGGAACCCAACGTACGGCTCCTGGTTTACAGAGAAACCCACCAAAAAGAATAATCCTATAGCAAAGAAGGAGCCACACGACAGGGGTAACCTGGGGCTGGAGGGAAGCTGTACTGTCCCACCTAACGTTGCAACTGGGAGACTTCCGGGGGCCTCACTGCTCCTAGAGCCCTCTTCGCTGACTGCCAATATGAAGGAGGTACCTCTGTTCAGGCTACGTCACTTCCCTTGTGGGAATGTCAATTACGGCTACCAGCAACAGGGCTTGCCCTTAGAAGCCGCTACTGCCCCTGGAGCTGGTCATTACGAGGATACCATTCTGAAAAGCAAGAATAGCATGAACCAGCCTGGGCCCTGA MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVVYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPLVEEEEKVPVRPKDPEGVPPLLVSQQAKREEERSPAAPPPLPTTSSGKAAKKPTAAEISVRVPRGPAVEGGHVNMAFSQSNPPSELHKVHGSRNKPTSLWNPTYGSWFTEKPTKKNNPIAKKEPHDRGNLGLEGSCTVPPNVATGRLPGASLLLEPSSLTANMKEVPLFRLRHFPCGNVNYGYQQQGLPLEAATAPGAGHYEDTILKSKNSMNQPGP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Soft_tissue no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1 Yes NHL, APL, AML leukaemia_lymphoma oncogene, fusion translocation, frameshift TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 30496 ARPC1B::KPNA7 ENSG00000130429.16::ENSG00000185467.8 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1121 FALSE NA FALSE NA ARPC1B ENSG00000130429.16 protein_coding + + chr7:99374249-99394816:+ chr7:99392876:+ chr7:98971872-98992439:+ chr7:98990499:+ KPNA7 ENSG00000185467.8 protein_coding - - chr7:99173572-99250075:- chr7:99195338:- chr7:98771195-98847698:- chr7:98792961:- chr7:99393821,chr7:99393748,chr7:99393821,chr7:99393749 chr7:99201000,chr7:99200647,chr7:99200973,chr7:99200647 NA NA chr7:98991444,chr7:98991371,chr7:98991444,chr7:98991372 chr7:98798623,chr7:98798270,chr7:98798596,chr7:98798270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WD40|10-26|0.26^eIF2A|10-71|0.00015^ANAPC4_WD40|15-70|0.00012^RMC1_N|17-68|0.00056^SH3_3|25-57|6.8e-05^Rax2|28-88|0.00022^WD40|43-79|3.4e-10^RMC1_N|63-154|8.1e-05^eIF2A|90-158|0.00018^ANAPC4_WD40|97-126|0.0065^WD40|100-120|0.0049^ANAPC4_WD40|103-176|4.8e-06^Rax2|121-164|0.00022^WD40|143-169|1.1e-07^WD40|202-228|0.0021^RMC1_N|202-230|2.3^SH3_3|202-208|1.1^ANAPC4_WD40|204-245|0.0048^WD40|244-265|0.088^Rax2|249-262|1.9^WD40|325-358|0.0058^eIF2A|350-364|0.34 Arm-PARTIAL|~285-311|1.3e-08^HEAT_EZ-PARTIAL|~285-308|0.44^HEAT_2-PARTIAL|~285-316|1.2^HEAT-PARTIAL|~285-311|1.1^Adaptin_N-PARTIAL|~285-314|2.9e-07^V-ATPase_H_C-PARTIAL|~285-312|0.0014^V-ATPase_H_C-PARTIAL|~285-351|0.0022^V-ATPase_H_N-PARTIAL|~285-334|0.044^Sec7-like_HUS-PARTIAL|~285-345|0.0045^MOR2-PAG1_C-PARTIAL|~285-434|0.00036^ELMO_ARM|293-345|0.044^HEAT_EZ|303-352|4.3e-06^Arm|314-354|3.3e-15^ARMC9_ARM|320-343|0.078^Arm_3|325-344|8.8^Adaptin_N|326-453|0.00011^HEAT_2|327-352|0.00039^HEAT|327-353|0.002^Arm_2|329-403|0.0036^HEAT_2|331-409|1.5e-07^HEAT_EZ|339-393|6.1e-09^HEAT_PBS|342-354|0.22^Arm|358-394|2.2e-09^Arm_2|364-435|0.012^HEAT|368-395|0.1^HEAT_EZ|383-423|0.0021^HEAT_PBS|383-406|4.1^ELMO_ARM|383-447|0.17^Sec7-like_HUS|399-448|0.0076^Arm|402-432|1.8e-06^V-ATPase_H_N|405-455|0.0044^ARMC9_ARM|408-444|1.4^HEAT|411-439|1.8^V-ATPase_H_C|411-486|0.0089^HEAT_2|438-467|2^Arm_3|448-495|8.9e-22^Arm_2|453-501|0.013^ELMO_ARM|470-486|0.63 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.17Mb] 40 18 40 18 ONLY_REF_SPLICE YES_LDAS 0.9152 GT 1.8062 AG 1.8892 ENST00000431816.6 1-989 ENST00000327442.7 285-1551 chr7|+|[0]99385715-99385778[0]|[1]99386685-99386789[0]|[1]99388039-99388261[1]|[2]99389905-99390012[1]|[2]99390893-99391099[1]|[2]99391178-99391253[2]|[0]99392671-99392876[1]<==>chr7|-|[2]99173708-99173794[0]|[2]99177920-99178066[0]|[2]99181883-99182065[0]|[2]99184929-99185162[0]|[2]99188300-99188563[0]|[2]99193019-99193101[1]|[0]99195070-99195338[2] atggcctaccacagcttcctggtggagcccatcagctgccacgcctggaacaaggaccgcacccagattgccatctgccccaacaaccatgaggtgcatatctatgaaaagagcggtgccaaatggaccaaggtgcacgagctcaaggagcacaacgggcaggtgacaggcatcgactgggcccccgagagtaaccgtattgtgacctgcggcacagaccgcaacgcctacgtgtggacgctgaagggccgcacatggaagcccacgctggtcatcctgcggatcaaccgggctgcccgctgcgtgcgctgggcccccaacgagaacaagtttgctgtgggcagcggctctcgtgtgatctccatctgttatttcgagcaggagaatgactggtgggtttgcaagcacatcaagaagcccatccgctccaccgtcctcagcctggactggcaccccaacaatgtgctgctggctgccggctcctgtgacttcaagtgtcggatcttttcagcctacatcaaggaggtggaggaacggccggcacccaccccgtggggctccaagatgccctttggggaactgatgttcgaatccagcagtagctgcggctgggtacatggcgtctgtttctcagccagcgggagccgcgtggcctgggtaagccacgacagcaccgtctgcctggctgatgccgacaagaagatggccgtcgcgactctggcctctgaaacactaccactgctggcgctgaccttcatcacagacaacagcctggtggcagcgggccacgactgcttcccggtgctgttcacctatgacgccgccgcggggatgctgagcttcggcgggcggctggacgttcctaagcagagctcgcagcgtggcttgacggcccgcgagcgcttccagaacctggacaagaaggcgagctccgagggtggcacggctgcgggcgcgggcctagactcgctgcacaagaacagcgtcagGAAAATGCTATCCCAGGAAAAGAACCCCCCTCTGAAACTGGTCATTGAAGCGGGCCTCATTCCCAGGATGGTGGAGTTCCTGAAGTCATCACTTTACCCCTGCTTGCAGTTTGAGGCTGCCTGGGCCCTGACCAACATCGCTTCAGGGACTTCGGAGCAGACTCGTGCCGTGGTAGAAGGGGGAGCCATCCAGCCCTTGATTGAGCTCCTGTCTTCCTCCAACGTGGCTGTGTGTGAACAGGCAGTGTGGGCTCTTGGTAATATAGCCGGTGATGGCCCAGAGTTCAGAGATAACGTCATCACAAGCAATGCCATCCCACATCTCCTAGCCTTGATTTCACCCACCCTGCCGATCACATTTCTGCGGAACATCACGTGGACCTTGTCGAATCTGTGCCGAAACAAGAACCCATACCCTTGCGACACTGCGGTGAAGCAGATACTGCCGGCCCTCCTTCACCTCCTGCAGCACCAGGACAGTGAGGTTCTCTCGGATGCCTGCTGGGCACTGTCCTACCTCACCGACGGCTCCAACAAGCGCATCGGCCAAGTGGTTAACACGGGGGTCCTGCCCAGGCTGGTAGTGCTCATGACCAGCTCAGAACTCAATGTCTTGACTCCTTCTCTCCGCACCGTGGGGAACATTGTCACGGGCACAGATGAGCAGACGCAGATGGCCATTGATGCGGGTATGCTGAACGTGCTCCCCCAGCTCCTGCAACACAACAAGCCCTCCATCCAGAAGGAGGCAGCCTGGGCCCTGAGCAACGTAGCAGCGGGGCCTTGTCACCACATCCAGCAGCTGCTTGCCTACGACGTCTTGCCTCCCTTGGTGGCTCTGCTAAAAAACGGAGAATTTAAAGTCCAGAAAGAGGCTGTCTGGATGGTGGCGAACTTTGCAACAGGGGCCACCATGGATCAGCTGATCCAGCTCGTCCACTCTGGGGTCCTGGAGCCACTGGTGAATCTGCTCACTGCCCCAGATGTTAAAATTGTTCTCATCATCCTTGATGTCATCTCTTGCATCCTCCAGGCGGCAGAGAAACGGTCTGAGAAGGAAAACCTGTGTCTTCTGATAGAAGAACTTGGTGGGATCGATAGAATTGAGGCTTTACAGCTGCATGAGAACCGTCAAATTGGCCAGTCGGCTTTGAACATCATCGAGAAGCACTTTGGTGAGGAAGAAGATGAGAGCCAAACTTTACTGAGCCAAGTCATAGACCAAGATTATGAATTTATAGATTATGAATGCTTAGCAAAAAAATAG MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVRKMLSQEKNPPLKLVIEAGLIPRMVEFLKSSLYPCLQFEAAWALTNIASGTSEQTRAVVEGGAIQPLIELLSSSNVAVCEQAVWALGNIAGDGPEFRDNVITSNAIPHLLALISPTLPITFLRNITWTLSNLCRNKNPYPCDTAVKQILPALLHLLQHQDSEVLSDACWALSYLTDGSNKRIGQVVNTGVLPRLVVLMTSSELNVLTPSLRTVGNIVTGTDEQTQMAIDAGMLNVLPQLLQHNKPSIQKEAAWALSNVAAGPCHHIQQLLAYDVLPPLVALLKNGEFKVQKEAVWMVANFATGATMDQLIQLVHSGVLEPLVNLLTAPDVKIVLIILDVISCILQAAEKRSEKENLCLLIEELGGIDRIEALQLHENRQIGQSALNIIEKHFGEEEDESQTLLSQVIDQDYEFIDYECLAKK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30497 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1118 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145947619:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23104144:+ chr10:23384508-23410942:+ chr10:23393073:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LIX1|80-328|3.1e-141^Dicer_dimer|123-165|3.3e-06 SelR-PARTIAL|~119-179|8.1e-53^Yippee-Mis18-PARTIAL|~119-158|7.7e-05^zinc_ribbon_10|132-156|3.8e-05^HECT_2|138-176|7.2e-05^Ribosomal_L37e|139-152|0.15 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr10] 34 23 34 19.36 ONLY_REF_SPLICE YES_LDAS 0.842 GT 1.8323 AG 1.9329 ENST00000604000.4 1-456 ENST00000376510.8 119-549 chr1|-|[2]145947619-145947782[1]|[0]145957636-145957927[0]<==>chr10|+|[1]23104144-23104244[2]|[0]23110242-23110318[1]|[2]23119304-23119451[2]|[0]23120758-23120862[2] atggagactatgcgagcgcagcggctgcagcctggtgtgggcaccagcgggaggggcactctccgagcgctgcggcccggagtgactggggccgcggccgccaccgccacaccccctgcgggccccccgcctgccccgccgcctcccgcaccgcccccgccgccgctgctcctgtctggggccccaggactacccctgccccccggcgccgccggcagcccggcagtgctgcgagaggccgtggaggccgtggtgaggagcttcgccaagcacacgcagggctatggccgagtgaatgtggtggaggcacttcaggaattctggcagatgaagcagtcccgtggtgctgacttaaagaatggggctctagtggtttatgagatggttccctccaacagccctccttatgtctgctatgtcaccctgcctgggggaagctgctttgggagtttccagGGTCTCTTGCAACGTGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCGGAGCAGTTCTACGTCACAAGAGAAAAGGGAACGGAACCGCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCCACTCTTCAGTTCTGAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGATACCTCGTTAGGATCAGCTCGCACAGAGGTTGTCTGCAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGACCTGGGCCCAATGGTCAGAGGTTTTGCATCAACAGTGTGGCTTTGAAGTTCAAACCAAGGAAACACTGA METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQGLLQRVSCLLPRVSGKRN*PRSSSTSQEKRERNRLSVGST*ITRKQECIIACAATVHSSVLRKSTALALGGLRFPRLMVRLALMKATQGS*DVWIPR*DQLAQRLSASSVKLI*VTCFLMDLGPMVRGFASTVWL*SSNQGNT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30498 PIP4K2A::NEBL ENSG00000150867.14::ENSG00000078114.19 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1122 FALSE NA FALSE NA PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22714183:- chr10:22823783-23003507:- chr10:23003112:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20828634:- chr10:21068902-21581940:- chr10:21117563:- chr10:22644549,chr10:22644549,chr10:22644070,chr10:22646006,chr10:22645702,chr10:22646008,chr10:22644485,chr10:22646013 chr10:20829648,chr10:20829652,chr10:20829885,chr10:20830041,chr10:20829846,chr10:20830040,chr10:20829197,chr10:20830040 NA NA chr10:22933478,chr10:22933478,chr10:22932999,chr10:22934935,chr10:22934631,chr10:22934937,chr10:22933414,chr10:22934942 chr10:21118577,chr10:21118581,chr10:21118814,chr10:21118970,chr10:21118775,chr10:21118969,chr10:21118126,chr10:21118969 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PIP5K-PARTIAL|125-144~|1.6e-85 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:1.36Mb] 24 18 24 18 ONLY_REF_SPLICE YES_LDAS 0.6627 GT 1.9329 AG 1.371 ENST00000376573.9 1-144 ENST00000377122.9 1672-3045 chr10|-|[2]22714183-22714326[0]<==>chr10|-|[2]20785747-20785923[0]|[2]20787202-20787308[1]|[0]20808510-20808659[1]|[0]20809806-20809898[1]|[0]20812769-20812940[0]|[2]20813939-20814043[0]|[2]20815625-20815717[0]|[2]20817600-20817692[0]|[2]20819424-20819516[0]|[2]20823208-20823300[0]|[2]20826447-20826539[0]|[2]20828530-20828634[0] atggcgacccccggcaacctagggtcctctgtcctggcgagcaagaccaagaccaagaagaagcacttcgtagcgcagaaagtgaagctgtttcgggccagcgacccgctgctcagcgtcctcatgtggggggtaaaccactcgAGAAAGTATAAAGATGAAGCAGAGAAGATGCTTTCTAACTATTCTACCATAGCAGATACTCCTGAAATTCAGAGAATTAAGACAACTCAACAAAACATTAGTGCGGTATTTTATAAGAAAGAAGTGGGAGCTGGCACTGCAGTGAAAGATAGCCCAGAGATCGAACGAGTGAAGAAAAATCAGCAGAATATTAGTTCAGTGAAATACAAAGAAGAGATTAAACATGCAACAGCCATTTCTGATCCTCCAGAACTAAAGAGAGTTAAAGAAAACCAGAAGAACATCAGCAATCTCCAGTATAAAGAGCAAAACTACAAGGCCACTCCGGTAAGCATGACCCCGGAGATAGAGAGAGTGAGGCGAAACCAGGAGCAGCTGAGTGCGGTAAAATATAAGGGAGAACTTCAACGGGGAACTGCAATTTCTGATCCACCAGAGCTGAAGAGGGCAAAAGAAAACCAGAAAAACATCAGCAATGTTTATTACAGAGGTCAGCTGGGAAGAGCTACCACTTTAAGTGTAACTCCTGAAATGGAAAGAGTGAAGAAGAATCAAGAAAATATTAGCTCGGTAAAATATACCCAGGACCATAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGCTATGAGACATGTTAAAGAAGCACAAAATCATATTTCAATGGTAAAATACCATGAAGATTTTGAAAAAACAAAGGGGAGAGGCTTTACTCCCGTCGTGGACGATCCTGTGACAGAGAGAGTGAGGAAGAACACCCAGGTGGTCAGCGATGCTGCCTATAAAGGGGTCCACCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTGACCTCAAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACCTTGATCCCCTGGAAGACAATATTCAGTCTAGAAGTCTCCATATGCTCTCTGAAAAGGCGAGTCACTATAGGCGACACTGGTCTCGATCCCATTCCAGCAGTACTTTCGGTACAGGTCTCGGAGACGACAGGTCAGAAATCTCCGAGATTTACCCTAGCTTTTCATGCTGCAGTGAGGTAACAAGACCGTCTGATGAAGGAGCACCTGTTCTTCCCGGAGCCTATCAGCAAAGCCATTCCCAAGGCTATGGCTACATGCACCAGACCAGTGTGTCATCCATGAGATCAATGCAGCATTCACCAAATCTAAGGACCTACCGAGCCATGTACGATTACAGTGCCCAGGATGAAGACGAGGTCTCCTTTAGAGACGGCGACTACATCGTCAACGTGCAGCCTATTGACGATGGCTGGATGTACGGCACAGTGCAGAGAACAGGGAGAACAGGAATGCTCCCAGCGAATTACATTGAGTTTGTTAATTAA MATPGNLGSSVLASKTKTKKKHFVAQKVKLFRASDPLLSVLMWGVNHSRKYKDEAEKMLSNYSTIADTPEIQRIKTTQQNISAVFYKKEVGAGTAVKDSPEIERVKKNQQNISSVKYKEEIKHATAISDPPELKRVKENQKNISNLQYKEQNYKATPVSMTPEIERVRRNQEQLSAVKYKGELQRGTAISDPPELKRAKENQKNISNVYYRGQLGRATTLSVTPEMERVKKNQENISSVKYTQDHKQMKGRPSLILDTPAMRHVKEAQNHISMVKYHEDFEKTKGRGFTPVVDDPVTERVRKNTQVVSDAAYKGVHPHIVEMDRRPGIIVDLKVWRTDPGSIFDLDPLEDNIQSRSLHMLSEKASHYRRHWSRSHSSSTFGTGLGDDRSEISEIYPSFSCCSEVTRPSDEGAPVLPGAYQQSHSQGYGYMHQTSVSSMRSMQHSPNLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30499 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1119 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145957636:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23104144:+ chr10:23384508-23410942:+ chr10:23393073:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LIX1-PARTIAL|80-292~|3.1e-141^Dicer_dimer|123-165|3.3e-06 SelR-PARTIAL|~119-179|8.1e-53^Yippee-Mis18-PARTIAL|~119-158|7.7e-05^zinc_ribbon_10|132-156|3.8e-05^HECT_2|138-176|7.2e-05^Ribosomal_L37e|139-152|0.15 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr10] 22 8 22 2.48 ONLY_REF_SPLICE YES_LDAS 0.3862 GT 1.8295 AG 1.9329 ENST00000604000.4 1-292 ENST00000376510.8 119-549 chr1|-|[0]145957636-145957927[0]<==>chr10|+|[1]23104144-23104244[2]|[0]23110242-23110318[1]|[2]23119304-23119451[2]|[0]23120758-23120862[2] atggagactatgcgagcgcagcggctgcagcctggtgtgggcaccagcgggaggggcactctccgagcgctgcggcccggagtgactggggccgcggccgccaccgccacaccccctgcgggccccccgcctgccccgccgcctcccgcaccgcccccgccgccgctgctcctgtctggggccccaggactacccctgccccccggcgccgccggcagcccggcagtgctgcgagaggccgtggaggccgtggtgaggagcttcgccaagcacacgcagggctatggccgagGGTCTCTTGCAACGTGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCGGAGCAGTTCTACGTCACAAGAGAAAAGGGAACGGAACCGCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCCACTCTTCAGTTCTGAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGATACCTCGTTAGGATCAGCTCGCACAGAGGTTGTCTGCAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGACCTGGGCCCAATGGTCAGAGGTTTTGCATCAACAGTGTGGCTTTGAAGTTCAAACCAAGGAAACACTGA METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGRGSLATCELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30503 LIX1L::MSRB2 ENSG00000271601.4::ENSG00000148450.13 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1120 TRUE 1989 TRUE 768 LIX1L ENSG00000271601.4 protein_coding - - chr1:145933423-145958017:- chr1:145947619:- chr1:145477069-145501670:- chr1:145501670:- MSRB2 ENSG00000148450.13 protein_coding + + chr10:23095579-23122013:+ chr10:23110242:+ chr10:23384508-23410942:+ chr10:23399171:+ chr1:145945963,chr1:145945979,chr1:145945973,chr1:145945991 chr10:23096279,chr10:23096279,chr10:23096279,chr10:23096279 NA NA chr1:145489124,chr1:145489108,chr1:145489114,chr1:145489096 chr10:23385208,chr10:23385208,chr10:23385208,chr10:23385208 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LIX1|80-328|3.1e-141^Dicer_dimer|123-165|3.3e-06 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr10] 10 7 10 1.16 ONLY_REF_SPLICE YES_LDAS 0.1761 GT 1.8323 AG 1.9329 ENST00000604000.4 1-456 ENST00000376510.8 220-549 chr1|-|[2]145947619-145947782[1]|[0]145957636-145957927[0]<==>chr10|+|[0]23110242-23110318[1]|[2]23119304-23119451[2]|[0]23120758-23120862[2] atggagactatgcgagcgcagcggctgcagcctggtgtgggcaccagcgggaggggcactctccgagcgctgcggcccggagtgactggggccgcggccgccaccgccacaccccctgcgggccccccgcctgccccgccgcctcccgcaccgcccccgccgccgctgctcctgtctggggccccaggactacccctgccccccggcgccgccggcagcccggcagtgctgcgagaggccgtggaggccgtggtgaggagcttcgccaagcacacgcagggctatggccgagtgaatgtggtggaggcacttcaggaattctggcagatgaagcagtcccgtggtgctgacttaaagaatggggctctagtggtttatgagatggttccctccaacagccctccttatgtctgctatgtcaccctgcctgggggaagctgctttgggagtttccagCCTTTCAGTGGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGCGTGTGCTGCGACAGTCCACTCTTCAGTTCTGAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCGTTTTCCGAGGCTCATGGTACGTCTGGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGATACCTCGTTAGGATCAGCTCGCACAGAGGTTGTCTGCAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGACCTGGGCCCAATGGTCAGAGGTTTTGCATCAACAGTGTGGCTTTGAAGTTCAAACCAAGGAAACACTGA METMRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPPAGPPPAPPPPAPPPPPLLLSGAPGLPLPPGAAGSPAVLREAVEAVVRSFAKHTQGYGRVNVVEALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30508 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 KARPAS299 SRR8615715 SRR8652059 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (anaplastic_large_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96630835,chr5:96630833 chr5:96631662,chr5:96631657 NA NA chr5:95966539,chr5:95966537 chr5:95967366,chr5:95967361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 6 3 6 3 ONLY_REF_SPLICE YES_LDAS 0.142 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30510 SPAG7::CAMTA2 ENSG00000091640.8::ENSG00000108509.21 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE FALSE TRUE 1125 FALSE NA FALSE NA SPAG7 ENSG00000091640.8 protein_coding - - chr17:4959226-4967817:- chr17:4967720:- chr17:4862521-4871112:- chr17:4871015:- CAMTA2 ENSG00000108509.21 protein_coding - - chr17:4967992-4987675:- chr17:4983043:- chr17:4871287-4890970:- chr17:4886338:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TerB-PARTIAL|21-85~|0.00012^DUF2130|22-83|4.9e-07^YebO|26-57|0.00039^R3H-PARTIAL|47-85~|9.9e-19 TIG|557-637|4.4e-12^Ank_5|732-753|0.015^Ank|734-753|0.0056^Ank_3|734-755|0.013^Ank_4|734-753|0.13^Ank_2|738-832|1.7e-08^Ank_5|778-820|0.00019^Ank|780-798|0.00011^Ank_3|780-800|0.0002^Ank_4|781-832|6.1e-05^Ank|813-832|0.73^Ank_3|813-832|9^IQ|1073-1089|0.0041^IQ|1097-1110|0.0017^IQ|1125-1144|0.00034^IQ|1148-1164|0.0015 ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];LOCAL_REARRANGEMENT:-:[120] 61 16 61 16 ONLY_REF_SPLICE YES_LDAS 0.8963 GT 1.5058 AG 1.9899 ENST00000206020.8 1-85 ENST00000414043.7 205-3726 chr17|-|[0]4967720-4967804[0]<==>chr17|-|[2]4968706-4968819[0]|[2]4968907-4968979[2]|[1]4969150-4969337[0]|[2]4969500-4969520[0]|[2]4969630-4969701[0]|[2]4969902-4970085[2]|[1]4970340-4970536[0]|[2]4972232-4972536[1]|[0]4972769-4972991[0]|[2]4973175-4973253[2]|[1]4973585-4973769[0]|[2]4974385-4974500[1]|[0]4977058-4977192[1]|[0]4978504-4978630[0]|[2]4979684-4980621[1]|[0]4981225-4981359[1]|[0]4981678-4981831[0]|[2]4982089-4982160[0]|[2]4982757-4982892[2]|[1]4982976-4983043[0] atggcggacctactgggctccatcctgagctccatggagaagccacccagcctcggtgaccaggagactcggcgcaaggcccgagGAGATTGCATCCTACCTGATCACCTTTGAGAAGCATGATGAGTGGCTGTCTTGTGCCCCAAAGACAAGGCCTCAGAATGGCTCCATCATCCTCTACAATCGCAAGAAGGTGAAATATCGGAAGGATGGTTACCTCTGGAAGAAGCGGAAGGATGGGAAGACCACCCGAGAGGACCACATGAAGCTGAAGGTCCAGGGCATGGAGTGTCTCTATGGCTGCTACGTTCACTCTTCCATCGTCCCCACATTCCATCGGCGCTGCTACTGGCTGCTCCAGAACCCTGACATCGTCCTTGTGCACTACCTGAACGTCCCAGCCCTGGAGGACTGTGGAAAGGGCTGCAGCCCCATCTTTTGTTCCATCAGCAGCGACCGTCGAGAGTGGCTGAAGTGGTCCCGGGAGGAGTTGTTGGGACAGCTGAAGCCCATGTTTCATGGCATCAAGTGGAGCTGCGGGAATGGAACAGAAGAGTTCTCTGTAGAACACCTGGTGCAGCAGATTTTGGACACCCACCCAACCAAGCCTGCTCCCCGAACCCACGCCTGTCTCTGCAGTGGGGGGCTTGGTTCTGGGAGCCTTACCCACAAATGCAGCAGCACGAAACACCGCATCATCTCTCCCAAAGTGGAGCCCCGAGCTTTAACCCTGACCTCTATCCCCCACGCTCACCCCCCAGAGCCTCCTCCACTGATAGCCCCACTTCCCCCAGAGCTCCCCAAGGCACACACCTCCCCATCTTCTTCCTCTTCTTCCTCCTCATCAGGTTTTGCAGAGCCCCTAGAAATCAGACCTAGCCCTCCCACTTCTCGAGGGGGTTCTTCAAGAGGAGGCACTGCTATCCTCCTCCTGACAGGACTGGAGCAGCGGGCTGGAGGCTTGACGCCCACCAGGCACTTGGCTCCACAGGCTGATCCTAGGCCTTCCATGAGTTTGGCAGTGGTTGTAGGCACTGAGCCTTCTGCCCCACCAGCTCCTCCCAGTCCTGCCTTTGACCCTGATCGTTTTCTCAACAGCCCCCAGAGGGGCCAGACATATGGAGGGGGGCAGGGAGTAAGCCCAGACTTCCCCGAGGCAGAGGCCGCTCATACCCCCTGTTCTGCCCTAGAGCCTGCTGCTGCCCTGGAGCCCCAGGCAGCTGCTCGGGGTCCCCCACCACAGTCAGTAGCAGGTGGGAGAAGAGGAAACTGCTTCTTCATCCAAGATGATGACAGTGGGGAGGAGCTCAAGGGTCACGGGGCTGCCCCACCCATACCTTCACCCCCTCCCTCACCCCCACCCTCACCTGCCCCCTTGGAGCCGTCAAGCAGGGTAGGAAGAGGAGAGGCCTTGTTTGGAGGACCTGTTGGGGCCAGTGAACTGGAGCCCTTCAGTCTTTCATCATTCCCAGACCTTATGGGAGAACTCATCAGTGACGAAGCTCCAAGCATCCCTGCTCCGACCCCCCAGCTGTCTCCTGCTCTTAGCACCATCACAGACTTCTCCCCAGAGTGGTCCTACCCAGAGGGTGGGGTCAAGGTGCTCATCACAGGTCCTTGGACCGAAGCCGCCGAGCATTACTCCTGTGTCTTTGATCACATCGCAGTGCCAGCCTCACTTGTCCAGCCTGGTGTCTTACGCTGCTACTGTCCCGCCCATGAGGTAGGGCTGGTGTCTTTGCAGGTGGCAGGGCGGGAGGGGCCCCTTTCTGCTTCTGTGCTCTTTGAGTATCGAGCCCGCCGATTCCTGTCTCTGCCTAGTACTCAACTTGACTGGCTGTCACTGGACGACAACCAGTTCCGGATGTCCATACTAGAGCGACTGGAGCAGATGGAGAAGCGGATGGCAGAGATCGCAGCAGCTGGGCAGGTGCCTTGCCAGGGTCCTGATGCTCCTCCAGTTCAGGATGAAGGCCAGGGGCCTGGGTTCGAAGCACGGGTAGTGGTCTTGGTAGAAAGCATGATCCCACGCTCCACCTGGAAGGGTCCTGAACGTCTGGCCCATGGAAGCCCCTTCCGGGGCATGAGCCTTCTGCACCTGGCTGCTGCCCAGGGCTATGCCCGCCTCATCGAGACCCTGAGCCAGTGGCGGAGTGTGGAGACTGGAAGCTTGGACTTAGAGCAGGAGGTTGACCCGCTCAACGTGGATCATTTCTCTTGCACCCCTCTGATGTGGGCTTGTGCCCTGGGACACCTGGAAGCTGCTGTGCTCCTTTTCCGTTGGAACCGACAGGCACTGAGCATTCCCGACTCTCTGGGCCGTCTGCCATTGTCTGTGGCTCATTCCCGGGGTCATGTGCGCCTTGCCCGCTGCCTTGAGGAACTACAGAGACAGGAGCCTTCGGTGGAGCCCCCATTTGCCCTATCGCCACCCTCCTCCAGCCCAGACACTGGTCTGAGCAGCGTCTCCTCGCCCTCGGAGCTGTCGGATGGCACCTTTTCCGTCACGTCAGCCTATTCTAGTGCCCCAGATGGCAGTCCCCCCCCTGCACCTCTGCCAGCCTCTGAGATGACTATGGAGGACATGGCCCCAGGCCAGCTTTCCTCTGGTGTCCCAGAAGCCCCCCTACTCCTCATGGACTATGAGGCTACCAACTCCAAGGGGCCCCTCTCCTCCCTTCCTGCCCTCCCACCAGCTTCAGATGATGGGGCTGCTCCAGAGGACGCTGACAGCCCACAGGCTGTGGATGTGATCCCGGTGGACATGATCTCACTAGCCAAGCAGATCATCGAAGCCACACCGGAGCGGATTAAACGAGAGGACTTCGTGGGGCTGCCCGAGGCTGGAGCCTCAATGCGGGAGCGGACAGGGGCTGTGGGGCTCAGTGAGACCATGTCCTGGCTGGCCAGCTACCTGGAGAATGTGGACCATTTCCCCAGCTCAACCCCTCCCAGCGAACTGCCCTTTGAGCGAGGTCGCCTGGCTGTCCCTTCAGCACCCTCCTGGGCAGAGTTTCTCTCTGCATCCACCAGTGGCAAGATGGAAAGTGATTTTGCCCTGCTGACACTATCAGATCACGAGCAGCGGGAACTGTATGAGGCTGCCCGAGTCATCCAGACGGCCTTCCGAAAGTACAAGGGCCGGCGGCTGAAGGAGCAGCAGGAGGTAGCAGCAGCTGTAATCCAGCGCTGTTACCGGAAGTACAAGCAGCTGACCTGGATTGCACTTAAGTTTGCACTCTATAAGAAGATGACCCAGGCGGCCATCCTGATCCAGAGCAAGTTCCGAAGCTACTATGAACAGAAGCGATTTCAGCAGAGCCGCCGAGCGGCTGTGCTCATCCAGCAGCACTACCGCTCCTACCGCCGCAGGCCCGGCCCTCCCCACCGGACTTCGGCCACCCTGCCTGCCCGCAACAAGCTCCTTTCTCACCAAGAAGCAGGACCAGGCAGCCCGGAAGATCATGAGATTCCTGCGGCGCTGCCGACACAGGATGAGGGAACTGAAGCAGAACCAGGAGCTGGAAGGGCTTCCCCAGCCGGGACTGGCCACATGACCTGGCCACCGCCTTTCTCACCACCCTGGGGGCGCCTCGTGCAGTCTTAA MADLLGSILSSMEKPPSLGDQETRRKARGDCILPDHL*EA**VAVLCPKDKASEWLHHPLQSQEGEISEGWLPLEEAEGWEDHPRGPHEAEGPGHGVSLWLLRSLFHRPHIPSALLLAAPEP*HRPCALPERPSPGGLWKGLQPHLLFHQQRPSRVAEVVPGGVVGTAEAHVSWHQVELREWNRRVLCRTPGAADFGHPPNQACSPNPRLSLQWGAWFWEPYPQMQQHETPHHLSQSGAPSFNPDLYPPRSPPRASSTDSPTSPRAPQGTHLPIFFLFFLLIRFCRAPRNQT*PSHFSRGFFKRRHCYPPPDRTGAAGWRLDAHQALGSTG*S*AFHEFGSGCRH*AFCPTSSSQSCL*P*SFSQQPPEGPDIWRGAGSKPRLPRGRGRSYPLFCPRACCCPGAPGSCSGSPTTVSSRWEKRKLLLHPR**QWGGAQGSRGCPTHTFTPSLTPTLTCPLGAVKQGRKRRGLVWRTCWGQ*TGALQSFIIPRPYGRTHQ*RSSKHPCSDPPAVSCS*HHHRLLPRVVLPRGWGQGAHHRSLDRSRRALLLCL*SHRSASLTCPAWCLTLLLSRP*GRAGVFAGGRAGGAPFCFCAL*VSSPPIPVSA*YST*LAVTGRQPVPDVHTRATGADGEADGRDRSSWAGALPGS*CSSSSG*RPGAWVRSTGSGLGRKHDPTLHLEGS*TSGPWKPLPGHEPSAPGCCPGLCPPHRDPEPVAECGDWKLGLRAGG*PAQRGSFLLHPSDVGLCPGTPGSCCAPFPLEPTGTEHSRLSGPSAIVCGSFPGSCAPCPLP*GTTETGAFGGAPICPIATLLQPRHWSEQRLLALGAVGWHLFRHVSLF*CPRWQSPPCTSASL*DDYGGHGPRPAFLWCPRSPPTPHGL*GYQLQGAPLLPSCPPTSFR*WGCSRGR*QPTGCGCDPGGHDLTSQADHRSHTGAD*TRGLRGAARGWSLNAGADRGCGAQ*DHVLAGQLPGECGPFPQLNPSQRTAL*ARSPGCPFSTLLGRVSLCIHQWQDGK*FCPADTIRSRAAGTV*GCPSHPDGLPKVQGPAAEGAAGGSSSCNPALLPEVQAADLDCT*VCTL*EDDPGGHPDPEQVPKLL*TEAISAEPPSGCAHPAALPLLPPQARPSPPDFGHPACPQQAPFSPRSRTRQPGRS*DSCGAADTG*GN*SRTRSWKGFPSRDWPHDLATAFLTTLGAPRAVL FALSE FALSE NA NA TRUE hsa-mir-6864,hsa-mir-6865 chr17:4969702-4969771:-,chr17:4970086-4970150:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma,Breast invasive carcinoma LUNG,BREAST no_match 4871015,4871015 TRUE,TRUE 4886338,4886338 TRUE,TRUE YES,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30512 IL4R::KATNIP ENSG00000077238.14::ENSG00000047578.14 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1126 TRUE 1998 TRUE 772 IL4R ENSG00000077238.14 protein_coding + + chr16:27313668-27364778:+ chr16:27355907:+ chr16:27324989-27376099:+ chr16:27367228:+ KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27677729:+ chr16:27561454-27791665:+ chr16:27689050:+ chr16:27356078,chr16:27356076 chr16:27658967,chr16:27658962 NA NA chr16:27367399,chr16:27367397 chr16:27670288,chr16:27670283 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame IL4Ra_N|28-121|9.6e-46^CRLF2-like_D2|123-223|7.5e-06^fn3|125-207|7.7e-06 DUF4457-PARTIAL|~541-606|4.7e-09^DUF4457-PARTIAL|~541-606|2.3e-08^Sad1_UNC|562-597|1.7^Sad1_UNC|975-1001|0.003^DUF4457|980-1131|1.6e-43^Sad1_UNC|1055-1083|0.54^Sad1_UNC|1211-1236|0.0065^DUF4457|1214-1532|3.5e-155^Sad1_UNC|1403-1424|0.057 ["IL4R:Oncogene"] 13 17 13 11.16 ONLY_REF_SPLICE YES_LDAS 0.2812 GT 1.9086 AG 1.7056 ENST00000543915.6 1-770 ENST00000261588.10 541-4857 chr16|+|[0]27340204-27340273[0]|[1]27342121-27342259[1]|[2]27344869-27345020[0]|[1]27346467-27346618[2]|[0]27352540-27352696[0]|[1]27355808-27355907[1]<==>chr16|+|[0]27677729-27677996[0]|[1]27681399-27681530[0]|[1]27698328-27698500[2]|[0]27699534-27699599[2]|[0]27701589-27701695[1]|[2]27703896-27703998[2]|[0]27708705-27708920[2]|[0]27721558-27721695[2]|[0]27740041-27740920[0]|[1]27749584-27750306[0]|[1]27751719-27751924[2]|[0]27754173-27754251[0]|[1]27761413-27761590[1]|[2]27766309-27766474[2]|[0]27769861-27770018[1]|[2]27771588-27771652[0]|[1]27773099-27773209[0]|[1]27774945-27775084[2]|[0]27776928-27777029[2]|[0]27777610-27777770[1]|[2]27777881-27777969[0]|[1]27778574-27778629[2] atggggtggctttgctctgggctcctgttccctgtgagctgcctggtcctgctgcaggtggcaagctctgggaacatgaaggtcttgcaggagcccacctgcgtctccgactacatgagcatctctacttgcgagtggaagatgaatggtcccaccaattgcagcaccgagctccgcctgttgtaccagctggtttttctgctctccgaagcccacacgtgtatccctgagaacaacggaggcgcggggtgcgtgtgccacctgctcatggatgacgtggtcagtgcggataactatacactggacctgtgggctgggcagcagctgctgtggaagggctccttcaagcccagcgagcatgtgaaacccagggccccaggaaacctgacagttcacaccaatgtctccgacactctgctgctgacctggagcaacccgtatccccctgacaattacctgtataatcatctcacctatgcagtcaacatttggagtgaaaacgacccggcagatttcagaatctataacgtgacctacctagaaccctccctccgcatcgcagccagcaccctgaagtctgggatttcctacagggcacgggtgagggcctgggctcagtgctataacaccacctggagtgagtggagccccagcaccaagtggcacaactcctacagggagcccttcgagcagcacctcctgctgggcgtcagcgtttcctgcattgtcatcctggccgtctgcctgttgtgctatgtcagcatcaccaaGAGCTGAGAAGAAGCCTGGAACTTAGTGTAAATCTACAAAGGAAACAAAAGGATTGTTCCAGCGATGAGTATGACTCTATTGAGGAAGACATACTCTCTGAGCCTGAGCCAGAGGACCCGGCACTGGTGGGCCATCCCAGACATGACCGCCCTCCTTCCAGTGGCGACTGGACTCAGAAAGATGTTCACGGGGAACAGGAGACAGAAGGACGCTCTTCTCCAGGCCCAGACACCCTCGTGGTGCTGGAATTTAACCCAGCTTCCAAAAGTCATAAAAGGGAAAGGAATTTGTCTGCAAAGCGGAAGGACAATGCTGAGGTTTTCGTTCCCACCAAACCTGAGCCAAACCTGACTCCCCAAGCTCCTGCTGTATTCCCAGACCAGGAGAGGATGTGCTCCAGACCTGGAAGCCGGCGAGAGAGACCCCTGTCTGCAACCCGCAAAACTCTTTGCGAGGCTGAGTACCCAGAGGAAGATGCCTCTGCTGTGCTCCAAGCCATCCAGGTGGAGAACGCAGCCCTGCAGAGGGCGCTCCTCAGCAGAAAGGCCGAGCAGCCAGCCAGCCCACTGCAGGATGCAGAAGGACCACCAGCAAAACCATGGACCAGTCTGCTGGAGGAGAAGGAAGAGACCCTTGAGCTGCTTCCCATCACCACGGCGACTACTACTCAGGAGCCGGCCGGGGCAGCAGGAGGAGCCAGGGCCATCAACCAGGCCATGGACAGAATTGGGCTTCTGGGAAGCAGACAACAGCAGAAGCTTCTGAAAGTCCTCCAGGCCGTCGAAAGTGACTCTGCCCATCTCGGCAGGGTGGTTTCACCAACCAAGGAGCAAGTATCAGACACAGAGGACAAACAGAGAATGAGGGCAGACGAGATCAAAGATGCCATCTACGTGACCATGGAGATCCTGTCCAACTGGGGCAACTCGTGGTGGGTGGGTCTCACAGAAGTCGAGTTCTTTGACTTGAATGACACAAAGCTTTATGTGTCGCCCCACGATGTGGATATCCGGAACACAGCCACGCCTGGGGAGCTGGGCCGCCTCGTCAACAGGAACTTAGCTGGCAAGAAAGACTCCTCCCCGTGGACCTGCCCCTTCCACCCACCACTCCAGCTGTTTTTTGTTATTCGAAACACAAGACAGCTGGGGGACTTCCATCTGGCCAAGATCAAGGTTCGGAATTACTGGACAGCTGATGGCGATCTTGACATTGGTGCCAAGAACGTGAAGCTTTACGTCAACAGAAACCTCATCTTCAATGGCAAGTTAGACAAAGGAGATAGGGAGGCCCCAGCTGACCACAGCATCCTGGTTGACCAGAAGAACGAGAAGAGCGAGCAACTAGAGGAGGCCATGAACGCTCACTCGGAAGAAAGCAAAGGCACCCATGAGATGGCTGGTGCCAGCGGGGACAAGGAGCTTGGTCTCGGTTGCTCACCGCCAGCTGAAACATTAGCGGATGCAAAGCTTTCTTCACAAGGAAATGTGTCTGGCAAAAGAAAGAATTCTACTAATTGCAGGAAAGACAGTTTGTCCCAGTTAGAGGAATATTTGAGACTGTCGGCAGTCCCCACTTCGATGGGTGACATGCCCAGTGCTCCTGCCACTTCCCCACCTGTGAAGTGCCCTCCTGTCCATGAGGAGCCCTCTCTCATCCAACAACTGGAAAACCTCATGGGCAGAAAAATCTGTGAGCCACCCGGGAAAACCCCATCCTGGTTACAACCTTCTCCCACCGGCAAGGACAGGAAGCAGGGAGGCAGGAAGCCAAAACCCCTCTGGCTTAGTCCCGAGAAGCCCCTGGCCTGGAAGGGCAGGCTCCCATCAGACGATGTCATCGGTGAGGGTCCTGGAGAGACCGAGGCCAGGGATAAAGGCCTACGGCATGAGCCAGGGTGGGGGACCAGCCGGAGTGTCAACACCAAGGAGAGACCCCAGAGGGCAACCACCAAAGTCCACAGTGATGACTCAGACATCTTTAACCAGCCCCCCAACAGAGAGCGCCCTGCTAGTGGGAGGAGGGGCTCAAGGAAGGATGCTGGCAGCAGTAGTCATGGGGACGACCAGCCAGCCAGCAGAGAAGACACCTGGTCTTCCAGGACGCCGTCACGGTCAAGGTGGCGCAGTGAGCAGGAGCACACACTTCACGAGTCATGGAGCTCCCTCAGTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACGGAGCTCCCGGGGGACATCCTGGATGAGCTCCTGCAGCAAAAGAGCAGCCGGCACAGCGACTTGCCCCCCTCCAAGAAGGGGGAGCAGCCAGGGCTGTCGAGAGGGCAGGATGGCTACTCTGGAGAGACAGACGCTGGGGGTGACTTTAAAATCCCCGTCTTGCCTTATGGACAGCGCTTGGTCATTGACATCAAGTCTACCTGGGGGGACAGACACTATGTCGGCCTCAACGGAATAGAAATATTCAGTTCCAAGGGTGAACCGGTGCAGATTTCAAACATAAAAGCAGACCCTCCCGATATCAATATTTTACCAGCCTATGGGAAAGACCCCCGCGTGGTCACCAACCTCATCGACGGGGTGAACAGGACCCAGGATGACATGCATGTCTGGCTGGCCCCCTTCACGCGGGGCAGATCCCACTCCATCACCATTGACTTCACGCACCCTTGCCACGTTGCCCTGATCAGAATTTGGAACTACAATAAATCTCGGATACATTCCTTCCGAGGCGTGAAGGACATCACAATGCTGTTAGACACCCAGTGCATCTTTGAAGGAGAAATCGCCAAGGCCTCTGGAACCCTGGCGGGAGCCCCAGAGCACTTTGGAGACACGATCTTATTCACAACCGATGATGACATTCTCGAGGCCATATTCTATTCTGATGAGATGTTTGACCTGGATGTGGGGAGCCTGGACAGCCTGCAGGATGAAGAGGCAATGAGGAGGCCCAGCACGGCCGACGGCGAGGGGGATGAGCGGCCCTTCACCCAGGCTGGCTTGGGGGCTGATGAACGGATCCCGGAGCTAGAGCTCCCATCCAGTTCCCCTGTCCCCCAAGTCACCACGCCAGAGCCAGGCATCTACCACGGAATCTGCCTTCAGCTGAATTTCACTGCCTCCTGGGGAGACTTGCACTACCTGGGGCTCACTGGCCTGGAAGTGGTGGGCAAGGAGGGCCAGGCGCTGCCCATCCACCTGCACCAGATCTCTGCTTCCCCCAGAGACTTAAATGAGCTCCCCGAGTACTCTGACGACTCCCGGGCCCTGGACAAGTTAATTGATGGCACCAACATCACCATGGAGGATGAGCATATGTGGCTGATCCCCTTCTCGCCGGGGCTGGACCATGTGGTCACGATCCGCCTGGACAGGGCCGAAAGCATCGCAGGCCTGCGCTTCTGGAACTACAATAAATCTCCCGAGGACACCTATCGCGGGGCCAAGATTGTCCACGTCTCCCTGGATGGCCTGTGCGTCTCCCCGCCAGAGGGCTTTCTCATCCGGAAGGGGCCAGGCAACTGCCACTTTGATTTTGCTCAAGAAATCCTCTTCGTGGACTACCTACGGGCTCAGCTGCTGCCCCAGCCGGCCAGGAGGCTGGACATGAGAAGCCTGGAGTGTGCAAGCATGGACTACGAGGCACCGCTGATGCCCTGTGGCTTCATTTTCCAGTTTCAGCTTCTCACCAGCTGGGGCGACCCCTACTACATCGGCCTCACCGGCCTGGAGCTGTATGACGAGCGAGGAGAAAAAATCCCCTTGTCGGAAAACAATATTGCGGCCTTCCCCGACAGCGTGAACTCCCTGGAGGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCATCGACCAAGTGAACGACACCAGTGATGGCCGGCACATGTGGCTGGCTCCCATCCTGCCGGGCCTGGTGAACCGGGTTTATGTGATTTTCGATCTGCCTACCACCGTGTCAATGATCAAACTGTGGAATTATGCGAAAACACCCCATCGAGGGGTGAAGGAGTTTGGCCTCCTGGTGGACGACCTGCTTGTGTACAATGGGATCCTGGCCATGGTGAGCCACCTGGTGGGGGGCATCCTGCCCACATGTGAGCCCACCGTGCCCTACCACACCATCCTCTTCACCGAGGACAGGGACATCCGCCACCAGGAGAAACACACCACCATCAGTAATCAGGCCGAGGATCAAGATGTCCAGATGATGAATGAAAACCAAATCATTACCAACGCGAAACGGAAGCAGAGCGTTGTTGACCCAGCCTTACGTCCCAAAACCTGCATCAGCGAGAAGGAGACGAGACGACGGCGCTGCTGA MGWLCSGLLFPVSCLVLLQVASSGNMKVLQEPTCVSDYMSISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQCYNTTWSEWSPSTKWHNSYREPFEQHLLLGVSVSCIVILAVCLLCYVSITKS*EEAWNLV*IYKGNKRIVPAMSMTLLRKTYSLSLSQRTRHWWAIPDMTALLPVATGLRKMFTGNRRQKDALLQAQTPSWCWNLTQLPKVIKGKGICLQSGRTMLRFSFPPNLSQT*LPKLLLYSQTRRGCAPDLEAGERDPCLQPAKLFARLSTQRKMPLLCSKPSRWRTQPCRGRSSAERPSSQPAHCRMQKDHQQNHGPVCWRRRKRPLSCFPSPRRLLLRSRPGQQEEPGPSTRPWTELGFWEADNSRSF*KSSRPSKVTLPISAGWFHQPRSKYQTQRTNRE*GQTRSKMPST*PWRSCPTGATRGGWVSQKSSSLT*MTQSFMCRPTMWISGTQPRLGSWAASSTGT*LARKTPPRGPAPSTHHSSCFLLFETQDSWGTSIWPRSRFGITGQLMAILTLVPRT*SFTSTETSSSMAS*TKEIGRPQLTTASWLTRRTRRASN*RRP*TLTRKKAKAPMRWLVPAGTRSLVSVAHRQLKH*RMQSFLHKEMCLAKERILLIAGKTVCPS*RNI*DCRQSPLRWVTCPVLLPLPHL*SALLSMRSPLSSNNWKTSWAEKSVSHPGKPHPGYNLLPPARTGSREAGSQNPSGLVPRSPWPGRAGSHQTMSSVRVLERPRPGIKAYGMSQGGGPAGVSTPRRDPRGQPPKSTVMTQTSLTSPPTESALLVGGGAQGRMLAAVVMGTTSQPAEKTPGLPGRRHGQGGAVSRSTHFTSHGAPSVPSTAPTGDASPTRSSRGTSWMSSCSKRAAGTATCPPPRRGSSQGCREGRMATLERQTLGVTLKSPSCLMDSAWSLTSSLPGGTDTMSASTE*KYSVPRVNRCRFQT*KQTLPISIFYQPMGKTPAWSPTSSTG*TGPRMTCMSGWPPSRGADPTPSPLTSRTLATLP*SEFGTTINLGYIPSEA*RTSQCC*TPSASLKEKSPRPLEPWREPQSTLETRSYSQPMMTFSRPYSILMRCLTWMWGAWTACRMKRQ*GGPARPTARGMSGPSPRLAWGLMNGSRS*SSHPVPLSPKSPRQSQASTTESAFS*ISLPPGETCTTWGSLAWKWWARRARRCPSTCTRSLLPPET*MSSPSTLTTPGPWTS*LMAPTSPWRMSICG*SPSRRGWTMWSRSAWTGPKASQACASGTTINLPRTPIAGPRLSTSPWMACASPRQRAFSSGRGQATATLILLKKSSSWTTYGLSCCPSRPGGWT*EAWSVQAWTTRHR*CPVASFSSFSFSPAGATPTTSASPAWSCMTSEEKKSPCRKTILRPSPTA*TPWRVWAGTSAPQTSSSTK*TTPVMAGTCGWLPSCRAW*TGFM*FSICLPPCQ*SNCGIMRKHPIEG*RSLASWWTTCLCTMGSWPW*ATWWGASCPHVSPPCPTTPSSSPRTGTSATRRNTPPSVIRPRIKMSR**MKTKSLPTRNGSRALLTQPYVPKPASARRRRDDGAA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30514 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1131 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45406292:- chr19:45882896-45909607:- chr19:45909550:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521994:- chr19:48023947-48076405:- chr19:48025251:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPP1R13L:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:2.11Mb] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.128 GT 1.9329 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30515 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1130 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45406292:- chr19:45882896-45909607:- chr19:45909550:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47521654:- chr19:48023947-48076405:- chr19:48024911:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPP1R13L:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:2.11Mb] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.128 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30519 IL4R::KATNIP ENSG00000077238.14::ENSG00000047578.14 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1127 TRUE 1998 TRUE 772 IL4R ENSG00000077238.14 protein_coding + + chr16:27313668-27364778:+ chr16:27352696:+ chr16:27324989-27376099:+ chr16:27364017:+ KATNIP ENSG00000047578.14 protein_coding + + chr16:27550133-27780344:+ chr16:27677729:+ chr16:27561454-27791665:+ chr16:27689050:+ chr16:27356078,chr16:27356076 chr16:27658967,chr16:27658962 NA NA chr16:27367399,chr16:27367397 chr16:27670288,chr16:27670283 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame IL4Ra_N|28-121|9.6e-46^CRLF2-like_D2|123-223|7.5e-06^fn3|125-207|7.7e-06 DUF4457-PARTIAL|~541-606|4.7e-09^DUF4457-PARTIAL|~541-606|2.3e-08^Sad1_UNC|562-597|1.7^Sad1_UNC|975-1001|0.003^DUF4457|980-1131|1.6e-43^Sad1_UNC|1055-1083|0.54^Sad1_UNC|1211-1236|0.0065^DUF4457|1214-1532|3.5e-155^Sad1_UNC|1403-1424|0.057 ["IL4R:Oncogene"] 9 14 9 4.59 ONLY_REF_SPLICE YES_LDAS 0.1582 GT 1.9086 AG 1.7056 ENST00000543915.6 1-670 ENST00000261588.10 541-4857 chr16|+|[0]27340204-27340273[0]|[1]27342121-27342259[1]|[2]27344869-27345020[0]|[1]27346467-27346618[2]|[0]27352540-27352696[0]<==>chr16|+|[0]27677729-27677996[0]|[1]27681399-27681530[0]|[1]27698328-27698500[2]|[0]27699534-27699599[2]|[0]27701589-27701695[1]|[2]27703896-27703998[2]|[0]27708705-27708920[2]|[0]27721558-27721695[2]|[0]27740041-27740920[0]|[1]27749584-27750306[0]|[1]27751719-27751924[2]|[0]27754173-27754251[0]|[1]27761413-27761590[1]|[2]27766309-27766474[2]|[0]27769861-27770018[1]|[2]27771588-27771652[0]|[1]27773099-27773209[0]|[1]27774945-27775084[2]|[0]27776928-27777029[2]|[0]27777610-27777770[1]|[2]27777881-27777969[0]|[1]27778574-27778629[2] atggggtggctttgctctgggctcctgttccctgtgagctgcctggtcctgctgcaggtggcaagctctgggaacatgaaggtcttgcaggagcccacctgcgtctccgactacatgagcatctctacttgcgagtggaagatgaatggtcccaccaattgcagcaccgagctccgcctgttgtaccagctggtttttctgctctccgaagcccacacgtgtatccctgagaacaacggaggcgcggggtgcgtgtgccacctgctcatggatgacgtggtcagtgcggataactatacactggacctgtgggctgggcagcagctgctgtggaagggctccttcaagcccagcgagcatgtgaaacccagggccccaggaaacctgacagttcacaccaatgtctccgacactctgctgctgacctggagcaacccgtatccccctgacaattacctgtataatcatctcacctatgcagtcaacatttggagtgaaaacgacccggcagatttcagaatctataacgtgacctacctagaaccctccctccgcatcgcagccagcaccctgaagtctgggatttcctacagggcacgggtgagggcctgggctcagtgctataacaccacctggagtgagtggagccccagcaccaagtggcacaactGAGCTGAGAAGAAGCCTGGAACTTAGTGTAAATCTACAAAGGAAACAAAAGGATTGTTCCAGCGATGAGTATGACTCTATTGAGGAAGACATACTCTCTGAGCCTGAGCCAGAGGACCCGGCACTGGTGGGCCATCCCAGACATGACCGCCCTCCTTCCAGTGGCGACTGGACTCAGAAAGATGTTCACGGGGAACAGGAGACAGAAGGACGCTCTTCTCCAGGCCCAGACACCCTCGTGGTGCTGGAATTTAACCCAGCTTCCAAAAGTCATAAAAGGGAAAGGAATTTGTCTGCAAAGCGGAAGGACAATGCTGAGGTTTTCGTTCCCACCAAACCTGAGCCAAACCTGACTCCCCAAGCTCCTGCTGTATTCCCAGACCAGGAGAGGATGTGCTCCAGACCTGGAAGCCGGCGAGAGAGACCCCTGTCTGCAACCCGCAAAACTCTTTGCGAGGCTGAGTACCCAGAGGAAGATGCCTCTGCTGTGCTCCAAGCCATCCAGGTGGAGAACGCAGCCCTGCAGAGGGCGCTCCTCAGCAGAAAGGCCGAGCAGCCAGCCAGCCCACTGCAGGATGCAGAAGGACCACCAGCAAAACCATGGACCAGTCTGCTGGAGGAGAAGGAAGAGACCCTTGAGCTGCTTCCCATCACCACGGCGACTACTACTCAGGAGCCGGCCGGGGCAGCAGGAGGAGCCAGGGCCATCAACCAGGCCATGGACAGAATTGGGCTTCTGGGAAGCAGACAACAGCAGAAGCTTCTGAAAGTCCTCCAGGCCGTCGAAAGTGACTCTGCCCATCTCGGCAGGGTGGTTTCACCAACCAAGGAGCAAGTATCAGACACAGAGGACAAACAGAGAATGAGGGCAGACGAGATCAAAGATGCCATCTACGTGACCATGGAGATCCTGTCCAACTGGGGCAACTCGTGGTGGGTGGGTCTCACAGAAGTCGAGTTCTTTGACTTGAATGACACAAAGCTTTATGTGTCGCCCCACGATGTGGATATCCGGAACACAGCCACGCCTGGGGAGCTGGGCCGCCTCGTCAACAGGAACTTAGCTGGCAAGAAAGACTCCTCCCCGTGGACCTGCCCCTTCCACCCACCACTCCAGCTGTTTTTTGTTATTCGAAACACAAGACAGCTGGGGGACTTCCATCTGGCCAAGATCAAGGTTCGGAATTACTGGACAGCTGATGGCGATCTTGACATTGGTGCCAAGAACGTGAAGCTTTACGTCAACAGAAACCTCATCTTCAATGGCAAGTTAGACAAAGGAGATAGGGAGGCCCCAGCTGACCACAGCATCCTGGTTGACCAGAAGAACGAGAAGAGCGAGCAACTAGAGGAGGCCATGAACGCTCACTCGGAAGAAAGCAAAGGCACCCATGAGATGGCTGGTGCCAGCGGGGACAAGGAGCTTGGTCTCGGTTGCTCACCGCCAGCTGAAACATTAGCGGATGCAAAGCTTTCTTCACAAGGAAATGTGTCTGGCAAAAGAAAGAATTCTACTAATTGCAGGAAAGACAGTTTGTCCCAGTTAGAGGAATATTTGAGACTGTCGGCAGTCCCCACTTCGATGGGTGACATGCCCAGTGCTCCTGCCACTTCCCCACCTGTGAAGTGCCCTCCTGTCCATGAGGAGCCCTCTCTCATCCAACAACTGGAAAACCTCATGGGCAGAAAAATCTGTGAGCCACCCGGGAAAACCCCATCCTGGTTACAACCTTCTCCCACCGGCAAGGACAGGAAGCAGGGAGGCAGGAAGCCAAAACCCCTCTGGCTTAGTCCCGAGAAGCCCCTGGCCTGGAAGGGCAGGCTCCCATCAGACGATGTCATCGGTGAGGGTCCTGGAGAGACCGAGGCCAGGGATAAAGGCCTACGGCATGAGCCAGGGTGGGGGACCAGCCGGAGTGTCAACACCAAGGAGAGACCCCAGAGGGCAACCACCAAAGTCCACAGTGATGACTCAGACATCTTTAACCAGCCCCCCAACAGAGAGCGCCCTGCTAGTGGGAGGAGGGGCTCAAGGAAGGATGCTGGCAGCAGTAGTCATGGGGACGACCAGCCAGCCAGCAGAGAAGACACCTGGTCTTCCAGGACGCCGTCACGGTCAAGGTGGCGCAGTGAGCAGGAGCACACACTTCACGAGTCATGGAGCTCCCTCAGTGCCTTCGACCGCTCCCACCGGGGACGCATCTCCAACACGGAGCTCCCGGGGGACATCCTGGATGAGCTCCTGCAGCAAAAGAGCAGCCGGCACAGCGACTTGCCCCCCTCCAAGAAGGGGGAGCAGCCAGGGCTGTCGAGAGGGCAGGATGGCTACTCTGGAGAGACAGACGCTGGGGGTGACTTTAAAATCCCCGTCTTGCCTTATGGACAGCGCTTGGTCATTGACATCAAGTCTACCTGGGGGGACAGACACTATGTCGGCCTCAACGGAATAGAAATATTCAGTTCCAAGGGTGAACCGGTGCAGATTTCAAACATAAAAGCAGACCCTCCCGATATCAATATTTTACCAGCCTATGGGAAAGACCCCCGCGTGGTCACCAACCTCATCGACGGGGTGAACAGGACCCAGGATGACATGCATGTCTGGCTGGCCCCCTTCACGCGGGGCAGATCCCACTCCATCACCATTGACTTCACGCACCCTTGCCACGTTGCCCTGATCAGAATTTGGAACTACAATAAATCTCGGATACATTCCTTCCGAGGCGTGAAGGACATCACAATGCTGTTAGACACCCAGTGCATCTTTGAAGGAGAAATCGCCAAGGCCTCTGGAACCCTGGCGGGAGCCCCAGAGCACTTTGGAGACACGATCTTATTCACAACCGATGATGACATTCTCGAGGCCATATTCTATTCTGATGAGATGTTTGACCTGGATGTGGGGAGCCTGGACAGCCTGCAGGATGAAGAGGCAATGAGGAGGCCCAGCACGGCCGACGGCGAGGGGGATGAGCGGCCCTTCACCCAGGCTGGCTTGGGGGCTGATGAACGGATCCCGGAGCTAGAGCTCCCATCCAGTTCCCCTGTCCCCCAAGTCACCACGCCAGAGCCAGGCATCTACCACGGAATCTGCCTTCAGCTGAATTTCACTGCCTCCTGGGGAGACTTGCACTACCTGGGGCTCACTGGCCTGGAAGTGGTGGGCAAGGAGGGCCAGGCGCTGCCCATCCACCTGCACCAGATCTCTGCTTCCCCCAGAGACTTAAATGAGCTCCCCGAGTACTCTGACGACTCCCGGGCCCTGGACAAGTTAATTGATGGCACCAACATCACCATGGAGGATGAGCATATGTGGCTGATCCCCTTCTCGCCGGGGCTGGACCATGTGGTCACGATCCGCCTGGACAGGGCCGAAAGCATCGCAGGCCTGCGCTTCTGGAACTACAATAAATCTCCCGAGGACACCTATCGCGGGGCCAAGATTGTCCACGTCTCCCTGGATGGCCTGTGCGTCTCCCCGCCAGAGGGCTTTCTCATCCGGAAGGGGCCAGGCAACTGCCACTTTGATTTTGCTCAAGAAATCCTCTTCGTGGACTACCTACGGGCTCAGCTGCTGCCCCAGCCGGCCAGGAGGCTGGACATGAGAAGCCTGGAGTGTGCAAGCATGGACTACGAGGCACCGCTGATGCCCTGTGGCTTCATTTTCCAGTTTCAGCTTCTCACCAGCTGGGGCGACCCCTACTACATCGGCCTCACCGGCCTGGAGCTGTATGACGAGCGAGGAGAAAAAATCCCCTTGTCGGAAAACAATATTGCGGCCTTCCCCGACAGCGTGAACTCCCTGGAGGGTGTGGGCGGGGACGTCCGCACCCCAGACAAGCTCATCGACCAAGTGAACGACACCAGTGATGGCCGGCACATGTGGCTGGCTCCCATCCTGCCGGGCCTGGTGAACCGGGTTTATGTGATTTTCGATCTGCCTACCACCGTGTCAATGATCAAACTGTGGAATTATGCGAAAACACCCCATCGAGGGGTGAAGGAGTTTGGCCTCCTGGTGGACGACCTGCTTGTGTACAATGGGATCCTGGCCATGGTGAGCCACCTGGTGGGGGGCATCCTGCCCACATGTGAGCCCACCGTGCCCTACCACACCATCCTCTTCACCGAGGACAGGGACATCCGCCACCAGGAGAAACACACCACCATCAGTAATCAGGCCGAGGATCAAGATGTCCAGATGATGAATGAAAACCAAATCATTACCAACGCGAAACGGAAGCAGAGCGTTGTTGACCCAGCCTTACGTCCCAAAACCTGCATCAGCGAGAAGGAGACGAGACGACGGCGCTGCTGA MGWLCSGLLFPVSCLVLLQVASSGNMKVLQEPTCVSDYMSISTCEWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQCYNTTWSEWSPSTKWHN*AEKKPGT*CKSTKETKGLFQR*V*LY*GRHTL*A*ARGPGTGGPSQT*PPSFQWRLDSERCSRGTGDRRTLFSRPRHPRGAGI*PSFQKS*KGKEFVCKAEGQC*GFRSHQT*AKPDSPSSCCIPRPGEDVLQTWKPARETPVCNPQNSLRG*VPRGRCLCCAPSHPGGERSPAEGAPQQKGRAASQPTAGCRRTTSKTMDQSAGGEGRDP*AASHHHGDYYSGAGRGSRRSQGHQPGHGQNWASGKQTTAEASESPPGRRK*LCPSRQGGFTNQGASIRHRGQTENEGRRDQRCHLRDHGDPVQLGQLVVGGSHRSRVL*LE*HKALCVAPRCGYPEHSHAWGAGPPRQQELSWQERLLPVDLPLPPTTPAVFCYSKHKTAGGLPSGQDQGSELLDS*WRS*HWCQEREALRQQKPHLQWQVRQRR*GGPS*PQHPG*PEEREERATRGGHERSLGRKQRHP*DGWCQRGQGAWSRLLTAS*NISGCKAFFTRKCVWQKKEFY*LQERQFVPVRGIFETVGSPHFDG*HAQCSCHFPTCEVPSCP*GALSHPTTGKPHGQKNL*ATRENPILVTTFSHRQGQEAGRQEAKTPLA*SREAPGLEGQAPIRRCHR*GSWRDRGQG*RPTA*ARVGDQPECQHQGETPEGNHQSPQ**LRHL*PAPQQRAPC*WEEGLKEGCWQQ*SWGRPASQQRRHLVFQDAVTVKVAQ*AGAHTSRVMELPQCLRPLPPGTHLQHGAPGGHPG*APAAKEQPAQRLAPLQEGGAARAVERAGWLLWRDRRWG*L*NPRLALWTALGH*HQVYLGGQTLCRPQRNRNIQFQG*TGADFKHKSRPSRYQYFTSLWERPPRGHQPHRRGEQDPG*HACLAGPLHAGQIPLHHH*LHAPLPRCPDQNLELQ*ISDTFLPRREGHHNAVRHPVHL*RRNRQGLWNPGGSPRALWRHDLIHNR**HSRGHILF**DV*PGCGEPGQPAG*RGNEEAQHGRRRGG*AALHPGWLGG**TDPGARAPIQFPCPPSHHARARHLPRNLPSAEFHCLLGRLALPGAHWPGSGGQGGPGAAHPPAPDLCFPQRLK*APRVL*RLPGPGQVN*WHQHHHGG*AYVADPLLAGAGPCGHDPPGQGRKHRRPALLELQ*ISRGHLSRGQDCPRLPGWPVRLPARGLSHPEGARQLPL*FCSRNPLRGLPTGSAAAPAGQEAGHEKPGVCKHGLRGTADALWLHFPVSASHQLGRPLLHRPHRPGAV*RARRKNPLVGKQYCGLPRQRELPGGCGRGRPHPRQAHRPSERHQ*WPAHVAGSHPAGPGEPGLCDFRSAYHRVNDQTVELCENTPSRGEGVWPPGGRPACVQWDPGHGEPPGGGHPAHM*AHRALPHHPLHRGQGHPPPGETHHHQ*SGRGSRCPDDE*KPNHYQRETEAERC*PSLTSQNLHQREGDETTALL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30521 PPP1R13L::ZNF541 ENSG00000104881.16::ENSG00000118156.13 U87MG SRR8615723 SRR8670718 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma) primary star-fusion TRUE TRUE TRUE 1129 TRUE 2001 TRUE 773 PPP1R13L ENSG00000104881.16 protein_coding - - chr19:45379638-45406349:- chr19:45404999:- chr19:45882896-45909607:- chr19:45908257:- ZNF541 ENSG00000118156.13 protein_coding - - chr19:47520690-47573148:- chr19:47531745:- chr19:48023947-48076405:- chr19:48035002:- chr19:45402941,chr19:45402944 chr19:47532424,chr19:47532424 NA NA chr19:45906199,chr19:45906202 chr19:48035681,chr19:48035681 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPP1R13L:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:2.11Mb] 8 4 8 3.16 ONLY_REF_SPLICE YES_LDAS 0.1299 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30527 R3HDM2::OS9 ENSG00000179912.21::ENSG00000135506.17 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1133 FALSE NA FALSE NA R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57395749:- chr12:57647545-57824826:- chr12:57789532:- OS9 ENSG00000135506.17 protein_coding + + chr12:57693841-57728342:+ chr12:57715760:+ chr12:58087624-58122125:+ chr12:58109543:+ chr12:57357381,chr12:57357403,chr12:57357752,chr12:57357760 chr12:57714306,chr12:57714284,chr12:57714251,chr12:57714243 NA NA chr12:57751164,chr12:57751186,chr12:57751535,chr12:57751543 chr12:58108089,chr12:58108067,chr12:58108034,chr12:58108026 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.26Mb] 71 22 71 22 ONLY_REF_SPLICE YES_LDAS 1.2862 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30529 ZNF445::SLC45A4 ENSG00000185219.18::ENSG00000022567.10 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1137 FALSE NA FALSE NA ZNF445 ENSG00000185219.18 protein_coding - - chr3:44431705-44477670:- chr3:44477591:- chr3:44473197-44519162:- chr3:44519083:- SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141254629:- chr8:142217265-142318404:- chr8:142264728:- chr3:44458244,chr3:44458249 chr8:141279906,chr8:141279908 NA NA chr3:44499736,chr3:44499741 chr8:142290005,chr8:142290007 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr8] 28 0 28 0 ONLY_REF_SPLICE YES_LDAS 0.3872 GT 1.4716 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30530 IAH1::TBC1D16 ENSG00000134330.19::ENSG00000167291.16 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1135 FALSE NA FALSE NA IAH1 ENSG00000134330.19 protein_coding + + chr2:9473658-9496543:+ chr2:9481447:+ chr2:9613787-9636672:+ chr2:9621576:+ TBC1D16 ENSG00000167291.16 protein_coding - - chr17:79932343-80035872:- chr17:80013609:- chr17:77906142-78009671:- chr17:77987408:- chr2:9482145,chr2:9482144 chr17:80019395,chr17:80019396 NA NA chr2:9622274,chr2:9622273 chr17:77993194,chr17:77993195 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr17] 23 14 23 14 ONLY_REF_SPLICE YES_LDAS 0.5117 GT 1.9219 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30531 TOP1::EYA2 ENSG00000198900.7::ENSG00000064655.19 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1136 FALSE NA FALSE NA TOP1 ENSG00000198900.7 protein_coding + + chr20:41028822-41124487:+ chr20:41084568:+ chr20:39657462-39753127:+ chr20:39713208:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47143059:+ chr20:45523263-45817492:+ chr20:45771698:+ chr20:41089095,chr20:41089095 chr20:47132375,chr20:47132372 NA NA chr20:39717735,chr20:39717735 chr20:45761014,chr20:45761011 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Topoisom_I_N|30-80|4^Topoisom_I|57-79|4^Topoisom_I_N|145-181|4^Topoisom_I_N|158-182|4^Topoisom_I_N|215-429|5.8e-105^T3SS_needle_E|310-321|2.9^Topoisom_I-PARTIAL|432-614~|3e-108^Topoisom_I_N|445-483|1.6 none ["TOP1:Oncogene","TOP1:ArcherDX_panel","TOP1:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:5.77Mb] 18 3 18 3 ONLY_REF_SPLICE YES_LDAS 0.2904 GT 1.6895 AG 1.7465 ENST00000361337.3 1-614 ENST00000497062.6 817-1545 chr20|+|[0]41029068-41029100[2]|[0]41029431-41029455[0]|[1]41061394-41061490[1]|[2]41076171-41076294[2]|[0]41077582-41077637[1]|[2]41080085-41080180[1]|[2]41081165-41081240[2]|[0]41084462-41084568[1]<==>chr20|+|[0]47143059-47143148[2]|[0]47169139-47169197[1]|[2]47172707-47172867[0]|[1]47179798-47179912[1]|[2]47180815-47180936[0]|[1]47183291-47183391[2]|[0]47188053-47188133[2] atgagtggggaccacctccacaacgattcccagatcgaagcggatttccgattgaatgattctcataaacacaaagataaacacaaagatcgagaacaccggcacaaagaacacaagaaggagaaggaccgggaaaagtccaagcatagcaacagtgaacataaagattctgaaaagaaacacaaagagaaggagaagaccaaacacaaagatggaagctcagaaaagcataaagacaaacataaagacagagacaaggaaaaacgaaaagaggaaaaggttcgagcctctggggatgcaaaaataaagaaggagaaggaaaatggcttctctagtccaccacaaattaaagatgaacctgaagatgatggctattttgttcctcctaaagaggatataaagccattaaagagacctcgagatgaggatgatgctgattataaacctaagaaaattaaaacagaagataccaagaaggagaagaaaagaaaactagaagaagaagaggatggtaaattgaaaaaacccaagaataaagataaagataaaaaagttcctgagccagataacaagaaaaagaagccgaagaaagaagaggaacagaagtggaaatgGACACCACGACGTCCGTGCGCATTGGCCTTATGATGGAAGAGATGATCTTCAACCTTGCAGATACACATCTGTTCTTCAATGACCTGGAGGATTGTGACCAGATCCACGTTGATGACGTCTCATCAGATGACAATGGCCAAGATTTAAGCACATACAACTTCTCCGCTGACGGCTTCCACAGTTCGGCCCCAGGAGCCAACCTGTGCCTGGGCTCTGGCGTGCACGGCGGCGTGGACTGGATGAGGAAGCTGGCCTTCCGCTACCGGCGGGTGAAGGAGATGTACAATACCTACAAGAACAACGTTGGTGGGTTGATAGGCACTCCCAAAAGGGAGACCTGGCTACAGCTCCGAGCTGAGCTGGAAGCTCTCACAGACCTCTGGCTGACCCACTCCCTGAAGGCACTAAACCTCATCAACTCCCGGCCCAACTGTGTCAATGTGCTGGTCACCACCACTCAACTAATTCCTGCCCTGGCCAAAGTCCTGCTATATGGCCTGGGGTCTGTGTTTCCTATTGAGAACATCTACAGTGCAACCAAGACAGGGAAGGAGAGCTGCTTCGAGAGGATAATGCAGAGATTCGGCAGAAAAGCTGTCTACGTGGTGATCGGTGATGGTGTGGAAGAGGAGCAAGGAGCGAAAAAGCACAACATGCCTTTCTGGCGGATATCCTGCCACGCAGACCTGGAGGCACTGAGGCACGCCCTGGAGCTGGAGTATTTATAG MSGDHLHNDSQIEADFRLNDSHKHKDKHKDREHRHKEHKKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAKIKKEKENGFSSPPQIKDEPEDDGYFVPPKEDIKPLKRPRDEDDADYKPKKIKTEDTKKEKKRKLEEEEDGKLKKPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWTPRRPCALAL*WKR*SSTLQIHICSSMTWRIVTRSTLMTSHQMTMAKI*AHTTSPLTASTVRPQEPTCAWALACTAAWTG*GSWPSATGG*RRCTIPTRTTLVG**ALPKGRPGYSSELSWKLSQTSG*PTP*RH*TSSTPGPTVSMCWSPPLN*FLPWPKSCYMAWGLCFLLRTSTVQPRQGRRAASRG*CRDSAEKLSTW*SVMVWKRSKERKSTTCLSGGYPATQTWRH*GTPWSWSIY FALSE FALSE NA NA TRUE hsa-mir-3616 chr20:47166967-47167058:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE topoisomerase (DNA) I 1 Yes AML* leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30533 ZNFX1::NCOA3 ENSG00000124201.15::ENSG00000124151.19 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNFX1 ENSG00000124201.15 protein_coding - - chr20:49237946-49278426:- chr20:49275779:- chr20:47854483-47894963:- chr20:47892316:- NCOA3 ENSG00000124151.19 protein_coding + + chr20:47501887-47656877:+ chr20:47622229:+ chr20:46130631-46285621:+ chr20:46250973:+ chr20:49272459,chr20:49272462 chr20:47586234,chr20:47586231 NA NA chr20:47888996,chr20:47888999 chr20:46214978,chr20:46214975 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCOA3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.58Mb] 13 20 13 20 ONLY_REF_SPLICE YES_LDAS 0.4564 GT 1.6895 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30541 USP15::LINC02388 ENSG00000135655.16::ENSG00000257259.3 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA USP15 ENSG00000135655.16 protein_coding + + chr12:62260338-62417431:+ chr12:62381663:+ chr12:62654119-62811211:+ chr12:62775444:+ LINC02388 ENSG00000257259.3 lncRNA - - chr12:58565959-58781747:- chr12:58757032:- chr12:58959742-59175529:- chr12:59150814:- chr12:62382892,chr12:62382890 chr12:58763725,chr12:58763727 NA NA chr12:62776673,chr12:62776671 chr12:59157507,chr12:59157509 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["USP15:Oncogene"];["CCLE_StarF2019"] 5 5 5 3.27 ONLY_REF_SPLICE YES_LDAS 0.1144 GT 1.9656 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-6125 chr12:62260359-62260454:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30542 PTPRO::SOX5 ENSG00000151490.15::ENSG00000134532.20 GB1 SRR8615732 SRR8639232 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15322801:+ chr12:15475191-15755109:+ chr12:15475735:+ SOX5 ENSG00000134532.20 protein_coding - - chr12:23529504-24562544:- chr12:24277312:- chr12:23682438-24715478:- chr12:24430246:- chr12:15371088,chr12:15371089 chr12:24300296,chr12:24300295 NA NA chr12:15524022,chr12:15524023 chr12:24453230,chr12:24453229 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PTPRO:Oncogene"];["SOX5:Oncogene"];INTRACHROMOSOMAL[chr12:7.93Mb] 4 6 4 6 ONLY_REF_SPLICE YES_LDAS 0.1383 GT 1.7968 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30544 KIF1B::UBE4B ENSG00000054523.20::ENSG00000130939.20 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1140 FALSE NA FALSE NA KIF1B ENSG00000054523.20 protein_coding + + chr1:10210570-10381603:+ chr1:10321857:+ chr1:10270628-10441661:+ chr1:10381915:+ UBE4B ENSG00000130939.20 protein_coding + + chr1:10032832-10181239:+ chr1:10072028:+ chr1:10092890-10241297:+ chr1:10132086:+ chr1:10323951,chr1:10323951 chr1:10063612,chr1:10063609 NA NA chr1:10384009,chr1:10384009 chr1:10123670,chr1:10123667 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Microtub_bd|6-158|3.7e-25^Kinesin|11-354|1.1e-119^FHA|213-223|3.9^Kinesin_assoc|358-555|1.4e-88^PH|544-579|1.4^Yop-YscD_cpl|556-635|2e-06^FHA|557-627|7.1e-14^KIF1B|679-696|2^Yop-YscD_cpl|688-714|8.1^KIF1B|845-892|1.5e-19^KIF1B|951-975|2.6e-07^DUF3694|1266-1413|5.5e-46^Microtub_bd|1322-1372|2.8^PH|1403-1454|1.6^Kinesin_assoc|1503-1558|2.4^PH|1703-1796|3.7e-17^PH_3|1705-1797|0.00011 Ufd2P_core|642-1263|7.9e-220^U-box|764-790|0.98^U-box|1279-1350|4.8e-34 ["YOSHIHARA_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[29566] 28 25 28 25 ONLY_REF_SPLICE YES_LDAS 0.5709 GT 1.4716 AG 1.8892 ENST00000377081.5 1-2358 ENST00000672724.1 25-4062 chr1|+|[0]10232329-10232434[0]|[1]10256247-10256323[2]|[0]10258493-10258672[2]|[0]10261905-10261970[2]|[0]10267380-10267558[1]|[2]10268152-10268263[2]|[0]10271502-10271579[2]|[0]10272241-10272306[2]|[0]10273014-10273031[2]|[0]10275428-10275503[0]|[1]10276321-10276399[1]|[2]10277986-10278128[0]|[1]10279097-10279138[0]|[1]10282322-10282533[2]|[0]10291082-10291161[1]|[2]10292047-10292122[2]|[0]10295086-10295165[1]|[2]10295660-10295766[0]|[1]10296582-10296665[0]|[1]10296897-10297077[1]|[2]10297174-10297246[2]|[0]10320043-10320136[0]|[1]10321709-10321857[2]<==>chr1|+|[0]10072028-10072214[0]|[1]10095461-10095596[1]|[2]10101108-10101195[2]|[0]10102948-10103092[0]|[1]10105516-10105744[1]|[2]10106197-10106583[1]|[2]10107222-10107374[1]|[2]10117459-10117600[2]|[0]10119513-10119613[1]|[2]10121962-10122076[2]|[0]10126794-10126877[2]|[0]10129392-10129448[2]|[0]10130500-10130616[2]|[0]10130715-10130813[2]|[0]10132369-10132482[2]|[0]10134988-10135186[0]|[1]10137067-10137205[1]|[2]10144940-10145039[2]|[0]10146963-10147090[1]|[2]10149184-10149282[1]|[2]10151326-10151561[0]|[1]10158356-10158482[1]|[2]10161142-10161286[2]|[0]10168136-10168270[2]|[0]10171138-10171329[2]|[0]10178644-10178818[0]|[1]10179416-10179562[0]|[1]10179895-10179956[2] atgtcgggagcctcagtgaaggtggctgtccgggtaaggcccttcaattctcgagagaccagcaaggaatccaaatgcatcattcagatgcaaggcaactcgaccagtattattaacccaaagaatccaaaggaagctccaaagtccttcagcttcgactattcctactggtctcatacctcacccgaagatccctgttttgcatctcaaaaccgtgtgtacaatgacattggcaaggaaatgctcttacacgcctttgagggatataatgtctgtatttttgcctatgggcagactggtgctggaaaatcttatacaatgatgggtaaacaagaagaaagccaggctggcatcattccacagttatgtgaagaactttttgagaaaatcaatgacaactgtaatgaagaaatgtcttactctgtagaggtgagctacatggaaatttactgtgaaagagtacgagatttgctgaatccaaaaaacaagggtaatttgcgtgtgcgtgaacacccacttcttggaccctatgtggaggatctgtccaagttggcagttacttcctacacagacattgctgacctcatggatgctgggaacaaagccaggacagtggcagctacaaacatgaatgaaacaagtagccgttcccacgctgtgtttacgattgttttcacccagaagaaacacgataatgagaccaacctttccactgagaaggtcagtaaaatcagcttggtggatctagcaggaagtgaacgagctgattcaactggtgccaaagggactcgattaaaggaaggagcaaatattaataagtctcttacaactttgggcaaagtcatttcagccttggccgaggtggataactgcactagcaagagtaaaaagaagaagaaaacagattttattccctacagggattctgtacttacttggctccttcgagaaaatttaggtggcaattctcggactgcaatggttgctgctctgagccccgcggatatcaactacgatgagactttgagcactctgagatatgcagatcgtgcaaaacaaattaaatgcaatgctgttatcaatgaggaccccaatgccaaactggttcgtgaattaaaggaggaggtgacacggctgaaggaccttcttcgtgctcagggcctgggagatattattgatattgatccattgatcgatgattactctggaagtggaagcaaatatctgaaagattttcagaacaataagcatagatacttgctagcctctgagaatcaacgccctggccatttttccacagcatccatggggtccctcacttcatccccatcttcctgctcactcagtagtcaggtgggcttgacgtctgtgaccagtattcaagagaggatcatgtctacacctggaggagaggaagctattgaacgtttaaaggaatcagagaagatcattgctgagttgaatgaaacttgggaagagaagcttcgtaaaacagaggccatcagaatggagagagaggctttgttggctgagatgggagttgccattcgggaagatggaggaaccctaggggttttctcacctaaaaagaccccacatcttgttaacctcaatgaagacccactaatgtctgagtgcctactttattacatcaaagatggaattacaagggttggccaagcagatgctgagcggcgccaggacatagtgctgagcggggctcacattaaagaagagcattgtatcttccggagtgagagaagcaacagcggggaagttatcgtgaccttagagccctgtgagcgctcagaaacctacgtaaatggcaagagggtgtcccagcctgttcagctgcgctcaggaaaccgtatcatcatgggtaaaaaccatgttttccgctttaaccacccggaacaagcacgagctgagcgagagaagactccttctgctgagaccccctctgagcctgtggactggacatttgcccagagggagcttctggaaaaacaaggaattgatatgaaacaagagatggagaaaaggctacaggaaatggagatcttatacaaaaaggagaaggaagaagcagatcttcttttggagcagcagagactggactatgagagtaaattgcaggccttgcagaagcaggttgaaacccgatctctggctgcagaaacaactgaagaggaggaagaagaggaagaagttccttggacacagcatgaatttgagttggcccaatgggccttccggaaatggaagtctcatcagtttacttcattacgggacttactctggggcaatgccgtgtacctaaaggaggccaatgccatcagtgtggaactgaaaaagaagATTCGACGGAGGCGCCTTGCACGACTTGCTGGTGGACAGACCTCTCAGCCAACCACCCCACTCACCTCTCCCCAGAGGGAGAACCCTCCGGGGCCTCCCATAGCGGCATCAGCCCCAGGACCCTCTCAGAGTCTTGGTCTCAATGTCCACAACATGACCCCAGCTACCTCCCCAATAGGTGCATCAGGAGTAGCCCATCGAAGCCAGAGCAGTGAAGGAGTCAGTTCTCTCAGCAGCTCGCCCTCTAATAGCCTTGAAACGCAATCTCAGTCTCTCTCACGTTCCCAGAGCATGGATATCGATGGTGTCTCATGTGAGAAAAGCATGTCCCAGGTGGATGTGGATTCAGGAATTGAAAACATGGAGGTTGATGAAAATGATCGAAGAGAAAAGCGGAGCCTCAGTGATAAGGAGCCTTCCTCGGGCCCTGAAGTGTCTGAAGAGCAGGCCTTACAGCTGGTCTGTAAGATCTTCCGTGTCTCTTGGAAGGACCGGGACAGAGATGTCATCTTTCTTTCTTCTCTTTCTGCACAGTTTAAGCAGAACCCAAAAGAAGTATTCTCCGATTTTAAGGACTTGATTGGCCAGATTTTAATGGAAGTGCTAATGATGTCCACTCAGACCAGAGATGAAAACCCATTTGCCAGTCTGACAGCCACATCACAGCCAATTGCTGCAGCAGCACGGTCACCAGACAGAAATCTCTTGCTAAACACTGGCTCCAATCCAGGAACAAGCCCCATGTTCTGCAGCGTGGCTTCCTTTGGTGCCAGCTCTTTGTCTAGCCTCTATGAAAGTAGTCCGGCTCCCACTCCCAGTTTCTGGAGCTCTGTTCCCGTGATGGGCCCGTCTCTTGCCTCACCTTCCCGTGCAGCCAGCCAGTTGGCTGTGCCTTCCACTCCCCTCAGTCCTCACAGTGCAGCCTCTGGAACTGCTGCGGGAAGCCAGCCTTCATCCCCGCGGTATCGCCCCTACACTGTCACTCACCCATGGGCGTCCTCAGGCGTCTCCATTCTGTCGAGCTCCCCAAGTCCCCCTGCCCTCGCCAGTAGCCCCCAAGCAGTGCCCGCCAGCAGTTCCAGACAGAGGCCCAGCAGCACGGGTCCACCCCTACCACCCGCCTCACCCAGTGCCACGAGCAGACGCCCCTCCTCCCTGAGGATCTCTCCTAGTATGTACGACAATCCTTTCTCCTTCCTCTTCCTCGCACTTTCTGGGGACAGTAGTGATGAAGAAGATGAAGAAGAAGATGATGATGATGGTGATGGTGATGATGAAGGTGGTGGTGGTGGTGATGATTTTTCTTGTGTCCAGTTTGGGTCCAGTTTGGGAGCCTCTGGTGGAGCAAGTAATTGGGATTCCTACAGTGACCATTTCACCATTGAAACCTGCAAAGAGACAGATATGCTGAACTACCTCATCGAGTGTTTCGACCGAGTTGGAATAGAGGAAAAAAAAGCACCAAAGATGTGCAGCCAGCCAGCAGTCAGCCAGCTTCTGAGCAACATCCGCTCACAGTGCATATCCCATACTGCTTTAGTACTACAAGGCTCCCTAACACAGCCCAGGTCCTTGCAGCAGCCGTCCTTCCTAGTGCCGTATATGCTGTGTAGGAATCTCCCATATGGCTTCATTCAGGAACTGGTGAGAACCACTCACCAGGATGAAGAAGTGTTCAAGCAGATATTTATCCCCATTTTACAAGGCCTGGCTCTTGCTGCCAAAGAGTGCTCCCTCGACAGTGACTACTTTAAATACCCCCTCATGGCACTAGGTGAGCTCTGTGAAACCAAGTTTGGGAAGACACACCCTGTGTGCAATTTGGTTGCTTCTTTGCGGTTGTGGTTGCCGAAATCCTTAAGTCCTGGCTGTGGGCGGGAGCTGCAGAGACTCTCTTACTTAGGGGCTTTCTTTAGCTTCTCAGTCTTTGCAGAAGATGATGTTAAAGTGGTTGAAAAATACTTCTCAGGGCCTGCCATTACCCTGGAAAACACTCGTGTGGTTAGCCAATCATTGCAGCATTACTTAGAGCTCGGAAGGCAAGAGCTTTTTAAGATTCTGCATAGTATTTTGTTAAATGGCGAAACCCGTGAGGCTGCTCTCAGTTACATGGCGGCTGTCGTCAATGCCAATATGAAGAAAGCACAGATGCAGACAGATGATAGATTGGTGTCTACAGATGGATTTATGCTGAATTTCCTTTGGGTACTGCAGCAGCTAAGTACAAAAATCAAGTTAGAAACAGTTGATCCCACGTATATTTTTCACCCAAGATGTCGGATTACTCTTCCCAATGATGAGACGCGTGTGAATGCAACGATGGAAGATGTGAATGACTGGCTGACTGAACTCTATGGCGATCAGCCTCCATTTTCTGAGCCGAAATTCCCTACGGAGTGCTTCTTTCTCACCCTGCATGCTCACCACCTCTCTATTCTGCCTAGTTGCCGTCGCTATATCCGCAGACTCCGGGCTATCCGGGAGCTCAATAGAACTGTAGAAGATTTGAAAAATAATGAAAGCCAATGGAAAGATTCCCCACTGGCAACTAGACACCGCGAAATGCTGAAGCGCTGTAAAACTCAGCTTAAGAAACTGGTACGGTGCAAGGCCTGTGCTGATGCTGGCCTACTTGACGAGAGCTTCCTGAGAAGATGTCTGAATTTTTATGGCCTTCTCATTCAGCTGCTGCTCCGCATCCTGGACCCCGCATATCCCGATATAACACTGCCTTTAAATTCAGATGTCCCCAAGGTATTTGCAGCGTTGCCTGAGTTTTATGTAGAAGATGTTGCAGAATTTTTATTTTTTATTGTACAATACTCTCCCCAGGCGCTTTATGAGCCCTGTACTCAGGATATTGTGATGTTCCTTGTTGTGATGTTGTGCAACCAGAACTACATCCGAAACCCATATTTGGTGGCCAAACTGGTAGAAGTCATGTTTATGACCAACCCTGCTGTTCAGCCACGAACCCAGAAGTTTTTTGAAATGATTGAGAACCATCCTCTCTCCACCAAGTTGTTGGTACCTTCCCTGATGAAGTTTTATACAGATGTTGAGCATACCGGAGCCACCAGTGAGTTTTATGACAAGTTCACAATTCGCTATCATATTAGCACCATTTTTAAAAGCCTTTGGCAAAACATAGCTCACCATGGCACCTTTATGGAGGAGTTCAACTCCGGGAAGCAGTTTGTTCGCTATATAAACATGTTGATAAACGACACGACGTTTTTGCTCGATGAAAGTCTGGAGTCTCTGAAGCGAATCCATGAAGTGCAGGAAGAGATGAAGAACAAAGAACAGTGGGACCAGTTGCCCCGGGATCAGCAGCAGGCTCGTCAGTCTCAGCTTGCTCAGGATGAGCGTGTGTCCCGCTCTTACCTCGCCCTGGCCACCGAAACCGTGGACATGTTCCACATCCTCACGAAGCAGGTCCAGAAGCCCTTCCTCAGACCGGAGCTTGGACCCCGATTGGCTGCAATGCTGAACTTTAATCTTCAGCAACTTTGTGGCCCCAAGTGCCGTGACCTGAAAGTTGAAAACCCTGAGAAATACGGCTTTGAACCAAAGAAGCTGTTGGACCAACTGACGGATATTTACTTACAGCTGGACTGTGCTCGGTTCGCGAAAGCCATTGCTGACGACCAGAGATCCTACAGTAAGGAATTGTTTGAAGAAGTTATTTCAAAGATGCGGAAGGCAGGGATCAAATCCACAATAGCAATAGAAAAATTTAAGCTGCTCGCCGAGAAAGTGGAGGAGATAGTGGCCAAGAACGCACGCGCAGAAATCGACTACAGCGACGCTCCTGATGAGTTCAGAGACCCTCTGATGGACACCCTCATGACAGACCCCGTGCGGCTGCCCTCTGGCACCATCATGGACCGCTCCATCATCCTGCGGCACCTGCTCAACTCCCCCACGGACCCCTTCAACCGGCAGACGCTGACAGAGAGCATGCTGGAACCAGTGCCAGAACTGAAAGAGCAGATTCAGGCGTGGATGAGAGAGAAACAGAACAGCGATCACTAA MSGASVKVAVRVRPFNSRETSKESKCIIQMQGNSTSIINPKNPKEAPKSFSFDYSYWSHTSPEDPCFASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEESQAGIIPQLCEELFEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHDNETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKEEVTRLKDLLRAQGLGDIIDIDPLIDDYSGSGSKYLKDFQNNKHRYLLASENQRPGHFSTASMGSLTSSPSSCSLSSQVGLTSVTSIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMEREALLAEMGVAIREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFRSERSNSGEVIVTLEPCERSETYVNGKRVSQPVQLRSGNRIIMGKNHVFRFNHPEQARAEREKTPSAETPSEPVDWTFAQRELLEKQGIDMKQEMEKRLQEMEILYKKEKEEADLLLEQQRLDYESKLQALQKQVETRSLAAETTEEEEEEEEVPWTQHEFELAQWAFRKWKSHQFTSLRDLLWGNAVYLKEANAISVELKKKIRRRRLARLAGGQTSQPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDGVSCEKSMSQVDVDSGIENMEVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFLSSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQTRDENPFASLTATSQPIAAAARSPDRNLLLNTGSNPGTSPMFCSVASFGASSLSSLYESSPAPTPSFWSSVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRYRPYTVTHPWASSGVSILSSSPSPPALASSPQAVPASSSRQRPSSTGPPLPPASPSATSRRPSSLRISPSMYDNPFSFLFLALSGDSSDEEDEEEDDDDGDGDDEGGGGGDDFSCVQFGSSLGASGGASNWDSYSDHFTIETCKETDMLNYLIECFDRVGIEEKKAPKMCSQPAVSQLLSNIRSQCISHTALVLQGSLTQPRSLQQPSFLVPYMLCRNLPYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDYFKYPLMALGELCETKFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDVKVVEKYFSGPAITLENTRVVSQSLQHYLELGRQELFKILHSILLNGETREAALSYMAAVVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPTYIFHPRCRITLPNDETRVNATMEDVNDWLTELYGDQPPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNFYGLLIQLLLRILDPAYPDITLPLNSDVPKVFAALPEFYVEDVAEFLFFIVQYSPQALYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain,Kidney,Breast no_match TRUE Glioblastoma multiforme,Kidney renal clear cell carcinoma,Liver hepatocellular carcinoma CENTRAL_NERVOUS_SYSTEM,KIDNEY,LIVER no_match 10292492,10292492,10270936 FALSE,FALSE,FALSE 10238702,10231196,10238702 FALSE,FALSE,FALSE PARTIALLY,YES,YES Out-of-frame,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30545 LSM14A::GARRE1 ENSG00000257103.9::ENSG00000166398.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1139 FALSE NA FALSE NA LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34196763:+ chr19:34663409-34720193:+ chr19:34687668:+ GARRE1 ENSG00000166398.14 protein_coding + + chr19:34254552-34355566:+ chr19:34319907:+ chr19:34745457-34846471:+ chr19:34810812:+ chr19:34202205,chr19:34202170 chr19:34303654,chr19:34303610 NA NA chr19:34693110,chr19:34693075 chr19:34794559,chr19:34794515 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LSM14|6-80|9.9e-38^SM-ATX|7-77|6.9e-13^FDF|188-211|0.27^FDF|249-356|2e-09 none none 24 20 24 18.81 ONLY_REF_SPLICE YES_LDAS 0.4611 GT 1.2867 AG 1.5329 ENST00000540746.6 1-415 ENST00000299505.8 496-3213 chr19|+|[0]34172643-34172763[0]|[1]34194478-34194641[2]|[0]34196634-34196763[0]<==>chr19|+|[0]34319907-34320116[2]|[0]34327421-34327561[2]|[0]34327771-34327866[2]|[0]34327990-34328151[2]|[0]34330189-34330347[2]|[0]34333704-34333801[1]|[2]34339867-34339992[1]|[2]34341422-34342455[0]|[1]34347877-34348042[1]|[2]34349016-34349153[1]|[2]34351514-34351592[2]|[0]34352647-34352955[2] atgagcgggggcaccccttacatcggcagcaagatcagcctcatctccaaggcggagatccgctacgagggcatcctctacaccatcgacaccgaaaactccaccgtagcccttgccaaagttcgatcctttggtacagaagacagaccgacagatcgtccaataccacctcgagatgaagtctttgaatacattatattccgtgggagtgacattaaagaccttactgtttgtgagccaccaaaaccacagtgttctttgcctcaagacccagctattgttcagtcctcactaggctcatcgacttcttcattccagtccatgggttcttatggacctttcggcaggatgcccacatacagtcagttcagtccgagttccttagttgggcagcagtttggtgctgttggtgttgGTGTTGGGGCGATGTTTCCTGACTGTGGTGCAAGTCCATTTCCAGTTTTTGACTCATGCGTTACAGAAGGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGAGGTCATCGTGCCAGAAAAAAAGAACAGCGGCAGTGGCGGCGGCTTATCTGGCATGGGCCACACACCTGAAGTAGAGGAAGCTGTGCGGTCCTGGCGGGGGGCTGCTGAGGCGACATCTAGACTAAGAGAAAGAGGCTGTGATGGTTGCCTGGCAGGAATTGAAGTTCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAACTGAACATAAAAATCGACAGTGCTTTGCAAGCATATAAGATAGCTCTGGAAAGCTTAGGACACTGTGAATATGCAATGAAAGCCGGCTTCCACCTGAATCCAAAGGCGATTGAAGCAAGTTTGCAGGGCTGCTGCAGCGAGGCGGAAGCCCAGCAGACGGGGCGGAGGCAGACACCCCCGCAGCCCATGCAGTGTGAGCTCCCCACCGTCCCTGTGCAGATAGGATCGCACTTCCTGAAGGGCGTCTCCTTTAATGAGTCGGCCGCCGACAATCTGAAACTTAAGACGCATACAATGTTACAGCTGATGAAGGAGGCAGGCTGCTATAATGGAATCACATCCAGGGATGATTTTCCTGTGACTGAAGTGCTGAACCAGGTTTGCCCTTCCACATGGCGAGGTGCCTGCAAGACGGCGGTGCAGCTGCTGTTTGGCCAGGCTGGACTGGTGGTGGTTGACACAGCACAGATTGAGAATAAAGAAGCCTATGCCCCCCAGATCAGTTTAGAAGGCTCTAGAATCGTGGTTCAAGTCCCATCCACATGGTGCCTGAAAGAAGACCCTGCTACCATGTCCCTGCTGCAGAGAAGCCTTGATCCTGAGAAGACCCTGGGTCTAGTGGACGTGCTCTACACAGCTGTGCTGGACCTAAACCGCTGGAGGGCTGGAAGGGAGCAAGCTTTACCCTGCATACAGATCCAGCTGCAAAGGGAGATCTGTGATTTTGGCAACCAGGCTGACCTGCCTTCTGGAAATGGAAACAAATCTTCAGGTGGCCTGCAGAAGACATTCTCCAAACTGACATCCCGGTTCACCAAGAAAGCTTCATGTACCAGCTCCAGCAGCAGCACAAATTATTCCATCCAAAATACCCCTTCCAAAAACATCTTCATAGCTGGATGTTCCGAAGAGAAGGCCAAAATGCCTGGCAATATTGATACAAGGTTACAAAGCATTTTGAACATTGGTAATTTCCCCAGGACTACAGACCCTTCACAGTCAGCTCAGAATTCCAGTAATACAGTGGCCAATGGCTTTCTCATGGAGAGGCGTGAGAACTTCCTGCATGGAGATGACGGCAAGGATGAGAAGGGTATGAACTTACCAACTGATCAGGAAATGCAAGAGGTGATAGATTTTCTCTCGGGCTTTAACATGGGCCAGTCACATCAGGGCTCTCCGTTGGTGACAAGGCATAATTCTGCTGCCACAGCCATGGTGACTGAGCAGAAGGCAGGAGCCATGCAACCACAGCAGCCGTCACTGCCTGTGCCCCCTCCACCACGGGCACCCCAGGCTGGGGCACACACACCTCTGACACCCCAGCCGGGACTGGCACCTCAGCAGCAGTCCCCAAAGCAGCAACAACCTCAAGTCCAATACTACCAACACCTACTCCAGCCCATTGGACCGCAGCAGCCCCCGCCCCAGCCTCGGGCACCTGGGAAATGGGTACATGGCTCATCCCAGCAGCCAGCGCAGGCTGTTGGAGCAGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATCTGATCTCAGTTCTGACTTGTACAGCTTGGGTCTGGTGAGCAGCTATATGGATAATGTGATGTCAGAGGTTCTGGGACAGAAGCCGCAGGGACCTAGAAATAACACCTGGCCCAACCGTGACCAAAGTGATGGAGTCTTTGGAATGCTGGGAGAGATTCTGCCTTTTGATCCTGCAGTGGGCTCAGACCCAGAGTTTGCACGCTATGTGGCAGGAGTGAGCCAGGCGATGCAGCAGAAGCGGCAGGCCCAGCACGGTCGCCGGCCAGGCAACCCCCGGGGCAACTGGCCGCCTATGGATGACGCGCATCGGACCTGGCCCTTCCCCGAGTTCTTCACAGAAGGGGATGGCCTGCACGGTGGCTGGTCGGGTGCTCAGGGAGACTCTGCCAGCTCGAGTGATGAGACATCCTCAGCCAACGGGGACAGCTTGTTCTCCATGTTTTCAGGGCCTGACCTCGTTGCTGCTGTCAAGCAGAGAAGGAAACACAGCAGTGGAGAGCAAGACACCAGCACGCTGCCCTCACCACCTCTCCTCACCACGGTGGAGGATGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCCTGGCAGCACCCTTCCCCGCTTCCCAGCACGCTGCCCAGCCCCAGCGCACCACTCTATGCAGTCACCAGCCCTGGCAGCCAGTGGAACGACACCATGCAGATGCTGCAGTCCCCAGTGTGGGCCGCAACCAACGACTGCAGTGCCGCTGCCTTCTCCTATGTGCAGACCCCACCCCAGCCCCCACCCCCACCAGCACACAAGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAAGGGTGAGCGCAGGCCAGCCTATCTGCCCCAGTACTGA MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSSLVGQQFGAVGVGVGAMFPDCGASPFPVFDSCVTEGPAGGSLLLC*GHRARKKEQRQWRRLIWHGPHT*SRGSCAVLAGGC*GDI*TKRKRL*WLPGRN*SSTTLLFSKCSNS*APAKRTEHKNRQCFASI*DSSGKLRTL*ICNESRLPPESKGD*SKFAGLLQRGGSPADGAEADTPAAHAV*APHRPCADRIALPEGRLL**VGRRQSET*DAYNVTADEGGRLL*WNHIQG*FSCD*SAEPGLPFHMARCLQDGGAAAVWPGWTGGG*HSTD*E*RSLCPPDQFRRL*NRGSSPIHMVPERRPCYHVPAAEKP*S*EDPGSSGRALHSCAGPKPLEGWKGASFTLHTDPAAKGDL*FWQPG*PAFWKWKQIFRWPAEDILQTDIPVHQESFMYQLQQQHKLFHPKYPFQKHLHSWMFRREGQNAWQY*YKVTKHFEHW*FPQDYRPFTVSSEFQ*YSGQWLSHGEA*ELPAWR*RQG*EGYELTN*SGNARGDRFSLGL*HGPVTSGLSVGDKA*FCCHSHGD*AEGRSHATTAAVTACAPSTTGTPGWGTHTSDTPAGTGTSAAVPKAATTSSPILPTPTPAHWTAAAPAPASGTWEMGTWLIPAASAGCWSRSVSSWSVAWHI*SQF*LVQLGSGEQLYG*CDVRGSGTEAAGT*K*HLAQP*PK*WSLWNAGRDSAF*SCSGLRPRVCTLCGRSEPGDAAEAAGPARSPARQPPGQLAAYG*RASDLALPRVLHRRGWPARWLVGCSGRLCQLE**DILSQRGQLVLHVFRA*PRCCCQAEKETQQWRARHQHAALTTSPHHGGGCEPG*QNQNVATQSTLAAPFPASQHAAQPQRTTLCSHQPWQPVERHHADAAVPSVGRNQRLQCRCLLLCADPTPAPTPTSTQGSTQGLQGLPWEG*AQASLSAPVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30548 SPAST::SLC30A6 ENSG00000021574.14::ENSG00000152683.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1142 FALSE NA FALSE NA SPAST ENSG00000021574.14 protein_coding + + chr2:32063556-32157637:+ chr2:32098891:+ chr2:32288625-32382706:+ chr2:32323960:+ SLC30A6 ENSG00000152683.14 protein_coding + + chr2:32165841-32224379:+ chr2:32220213:+ chr2:32390910-32449448:+ chr2:32445282:+ chr2:32104118,chr2:32104119 chr2:32211241,chr2:32211239 NA NA chr2:32329187,chr2:32329188 chr2:32436310,chr2:32436308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MIT|122-163|1.9e-05^AAA_22|133-167|5.2^AAA_18|141-187|1.1^AAA_25|157-198|0.75^AAA_14|314-358|1.6^DUF815|334-488|3.1e-05^Mg_chelatase|341-355|3.5^TIP49|343-426|1.6e-06^AAA_25|367-397|0.0021^AAA_16|373-434|1.3e-05^RuvB_N|375-451|3.3e-08^AAA_22|376-412|2.7e-05^TniB|376-399|0.00078^Mg_chelatase|377-396|1.2e-05^IstB_IS21|377-444|2.9e-05^AAA|378-507|1.4e-42^AAA_5|378-500|1.3e-06^AAA_14|378-445|1.8e-05^AAA_24|378-446|5.5e-05^nSTAND3|378-401|0.00013^AAA_2|378-444|0.00043^AAA_18|379-408|0.0026^AAA_17|381-407|0.0015^TniB|420-451|0.015^AAA_25|423-457|1^AAA_17|425-460|1.6^TIP49|432-446|2.1^DUF4368|488-510|0.00029^AAA_22|503-536|2.2^AAA_lid_3|534-567|7.4e-13^Vps4_C|578-612|2.8e-09 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.01Mb];NEIGHBORS[8204] 17 14 17 14 ONLY_REF_SPLICE YES_LDAS 0.3339 GT 1.9656 AG 1.9656 ENST00000315285.9 1-682 ENST00000357055.7 799-1299 chr2|+|[0]32063832-32064246[0]|[1]32087492-32087578[0]|[1]32089522-32089605[0]|[1]32098796-32098891[0]<==>chr2|+|[0]32220213-32220713[2] atgaattctccgggtggacgagggaagaagaaaggctccggcggcgccagcaacccggtgcctcccaggcctccgcccccttgcctggcccccgcccctcccgccgccgggccggcccctccgcccgagtcgccgcataagcggaacctgtactatttctcctacccgctgtttgtaggcttcgcgctgctgcgtttggtcgccttccacctggggctcctcttcgtgtggctctgccagcgcttctcccgcgccctcatggcagccaagaggagctccggggccgcgccagcacctgcctcggcctcggccccggcgccggtgccgggcggcgaggccgagcgcgtccgagtcttccacaaacaggccttcgagtacatctccattgccctgcgcatcgatgaggatgagaaagcaggacagaaggagcaagctgtggaatggtataagaaaggtattgaagaactggaaaaaggaatagctgttatagttacaggacaaggtgaacagtgtgaaagagctagacgccttcaagctaaaatgatgactaatttggttatggccaaggaccgcttacaacttctagagaagatgcaaccagttttgccattttccaagtcacaaacggacgtctataatgacagtactaacttggcatgccgcaatggacatctccagtcagGCTGGATCAGTGCATGTAAGAATTCGACGAGATGCCAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTCTACTCTAACTGTTCAAATTTTCAAGGATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGTCCTAAACTTTTCAGATCATCACGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTTACATCAACTCCAGCTAAACCTAGTAGTCCACCTCCAGAATTTTCATTTAACACTCCTGGGAAAAATGTGAACCCAGTTATTCTTCTAAACACACAAACAAGGCCTTATGGTTTTGGTCTCAATCATGGACACACACCTTACAGCAGCATGCTTAATCAAGGACTTGGAGTTCCAGGAATTGGAGCAACTCAAGGATTGAGGACTGGTTTTACAAATATACCAAGTAGATATGGAACTAATAATAGAATTGGACAACCAAGACCATGA MNSPGGRGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESPHKRNLYYFSYPLFVGFALLRLVAFHLGLLFVWLCQRFSRALMAAKRSSGAAPAPASASAPAPVPGGEAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQLLEKMQPVLPFSKSQTDVYNDSTNLACRNGHLQSGWISACKNSTRCQ*TNGSCSCDQQAVHSSVYSNCSNFQG*LD*ACLIVWACCSQCPKLFRSSRNPNASFKGY**FEPSYINSS*T**STSRIFI*HSWEKCEPSYSSKHTNKALWFWSQSWTHTLQQHA*SRTWSSRNWSNSRIEDWFYKYTK*IWN***NWTTKTM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30549 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1141 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72375872:- chr10:74127098-74385889:- chr10:74135630:- chr10:72199990,chr10:72200023,chr10:72199995 chr10:72386552,chr10:72386471,chr10:72386554 NA NA chr10:73959748,chr10:73959781,chr10:73959753 chr10:74146310,chr10:74146229,chr10:74146312 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KH_1|99-148|2.2e-11^TraC_F_IV|155-183|0.54^AKAP7_NLS|161-350|1.8e-56^DUF2299|185-240|2.2e-05^HVSL|193-315|3.6e-06^TraC_F_IV|265-319|8e-05 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.15Mb] 17 24 17 21.47 ONLY_REF_SPLICE YES_LDAS 0.4144 GT 1.7056 AG 1.9329 ENST00000394915.7 1-394 ENST00000635239.1 1193-1443 chr10|-|[0]72203427-72203524[2]|[1]72204422-72204505[2]|[1]72210732-72210831[1]|[0]72213187-72213298[0]<==>chr10|-|[2]72368195-72368355[1]|[0]72375783-72375872[1] atggaagttctgcgtccacagcttataagaattgatggccggaattacaggaagaatccagtccaagaacagacctatcaacatgaagaagatgaagaggacttctatcaaggctccatggagtgtgctgatgagccctgtgatgcctacgaggtggagcagaccccacaaggattccggtctactttgagggcccccagcttgctctataatctcattcacttgaacacatcaaacgactgtgggttccagaagataactttggattgtcagaatatttatacttggaagtccaggcatatagttggaaagagaggggacactaggaagaaaatagaaatggagaccaaaacttctattagcattcctaaacctggacaagacggggaaattgTGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATGGCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGGCCTGGAAAAGCCCAAAGACATGGGTTTCACTCGCCTCATGCAGGCCATGTGGAAATGTGCACAGGAAACTGCCTGGGACTTCGCTTTACCCAAACAGTAA MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus no_match TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 TRUE,TRUE,TRUE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30550 TRIOBP::LGALS1 ENSG00000100106.22::ENSG00000100097.12 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1145 FALSE NA FALSE NA TRIOBP ENSG00000100106.22 protein_coding + + chr22:37697048-37776556:+ chr22:37771736:+ chr22:38093055-38172563:+ chr22:38167743:+ LGALS1 ENSG00000100097.12 protein_coding + + chr22:37675636-37679802:+ chr22:37676986:+ chr22:38071643-38075809:+ chr22:38072993:+ chr22:37771994,chr22:37771993 chr22:37676031,chr22:37676027 NA NA chr22:38168001,chr22:38168000 chr22:38072038,chr22:38072034 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PH|1781-1886|4.8e-20^Gp58|2121-2212|3.2e-05 Gal-bind_lectin|10-134|1.3e-36^DUF1344|24-38|0.16^DUF1344|93-119|3.1e-05 ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.02Mb];LOCAL_REARRANGEMENT:+:[17198] 11 11 11 11 ONLY_REF_SPLICE YES_LDAS 0.237 GT 1.8323 AG 1.7819 ENST00000644935.1 1-6936 ENST00000215909.10 10-408 chr22|+|[0]37701366-37701479[2]|[0]37710427-37710566[1]|[2]37713210-37713411[2]|[0]37715763-37715934[0]|[1]37723185-37726503[1]|[2]37733298-37733412[2]|[0]37734399-37735442[2]|[0]37738642-37738719[2]|[0]37740895-37741032[2]|[0]37751772-37751828[2]|[0]37754877-37754984[2]|[0]37755101-37755190[2]|[0]37755550-37755659[1]|[2]37757613-37758138[2]|[0]37759154-37759264[2]|[0]37765670-37765817[0]|[1]37768074-37768176[1]|[2]37769028-37769187[2]|[0]37769262-37769375[2]|[0]37771650-37771736[2]<==>chr22|+|[0]37676986-37677065[1]|[2]37678483-37678654[2]|[0]37679603-37679749[2] atggaggaggtgcctggggatgccctgtgtgaacactttgaggccaacatacttacccagaaccgctgtcaaaactgcttccaccctgaggaggcccatggagcaagataccaggagctcaggagcccttcaggtgctgaggtgccctactgcgacctgcctcgatgtccacctgcccctgaggacccactcagcgcctcaacctccggctgccagtctgtggtggacccaggcctcaggccagggcccaagaggggcccatccccctcagcagggctcccagaagagggtcccacagctgcccccaggagcaggagccgggagcttgaggcagtaccctatctggagggcctgaccacttccttgtgtggcagctgcaacgaggaccccggctctgaccccacctccagccctgactccgccacccctgatgataccagcaactcgtcctctgtggactgggacactgttgagaggcaggaggaggaggcccccagctgggacgagctcgcagtgatgatcccgaggaggcctcgggaggggccgagagctgacagctcccaaagggctccgtctctcctcaccaggtcccctgtgggaggagatgctgcaggccagaaaaaggaggacaccggcggtgggggccggagcgcaggacagcactgggcaaggctccggggagaaagcgggttgtccctggagcggcaccggtcaacactgacccaggcttcctccatgacaccacacagtggacctcgaagcaccacgtctcaggcttctcctgcccaaagggacactgctcaggctgcctctacacgtgaaatccccagagcctcctctccccatcgaatcacccaaagggacacctccagggcctcatccacccaacaggaaatctccagggcctcatccacccaacaggaaacctccagggcctcatccacccaagaggacacccctagggcctcatccacccaagaggacacccccagggcctcatctacacagtggaacacccccagagcttcctctccctcacgaagcacccaactggataaccccagaacctcttctacccagcaggacaacccccaaacttcttttcctacttgtactccccagcgggaaaaccccaggacaccctgtgtccagcaggacgatcccagagcctcctctcccaacagaaccactcaacgagagaattccagaacatcctgtgcccagcgggacaatcccaaagcctccagaacctcctctcccaatagagccacacgagacaaccccagaacatcctgcgcccagcgggacaatcccagagcctcctctcccagtagagctacacgagacaaccccacaacatcctgtgcccagcgggacaatcccagagcctccagaacctcctctcccaatagagccacacgagacaaccccagaacatcctgtgcccagcgggacaatcccagagcctcctctcccagtagagctacacgagacaaccccacaacatcctgtgcccagcgggacaatcccagagcctccagaacctcctctcccaatagagccacacgagacaaccccagaacatcctgcgcccagcgggacaatcccagagcctcctctcccaatagagctgcacgagacaaccccacaacatcctgtgcccagcgggacaatcccagagcctccagaacctcctctcccaatagagccacacgagacaaccccagaacatcctgtgcccagcgggacaatcccagagcctcctctcccaatagagctacacgagacaaccccacaacatcctgtgcccagcgggacaatcccagagcctccagaacctcctctcccaatagagccacacgagataaccccagaacatcctgtgcccagcgggacaatcccagagcctcctctcccaacagaaccacccaacaagacagccccagaacatcctgtgcccgacgggacgatcccagagcctcctctcctaacagaaccatccaacaagagaaccccagaacatcctgtgccctacgggacaatcccagagcctcctctcccagcagaaccatccaacaagagaaccccagaacatcctgtgcccaacgggacgatcccagagcctcctctcctaacagaaccacccaacaagagaaccccagaacatcctgtgcccgacgggacaatcccagagcctcctctcgcaacagaaccatccagcgagacaaccccagaacatcctgtgcccagcgggacaatcccagagcctcctctcctaacagaaccatccaacaagagaacctcagaacatcctgtacccgacaggacaatcccaggacctcctctcccaatagagccacacgagacaaccccagaacatcctgtgcccagcgggacaatctcagagcctcctctcccatcagagccacccaacaggacaaccccagaacttgtattcaacagaacatccccagatcatcttctacccaacaagacaaccctaaaacctcttgtaccaaacgagataacctcagacccacttgtacacagcgggaccgcacacagtccttttcctttcaacgagacaaccctggaacctcctcatctcaatgctgcacccaaaaggagaatctgagaccatcatctccccaccgctccactcaatggaacaatcccaggaattcatctccccatcgtactaacaaagacatcccctgggcctcgtttcccctccggccaactcagagtgatggtccccgaacctcttccccatctcgctccaagcaaagcgaggttccctgggcatccatcgccctccggccaacccaaggtgacaggcctcagacatcctctcccagcaggccagcccagcatgacccaccccagtcctcctttggccccacccagtacaacttgccatcccgggccacctcttcctcccataacccaggccaccagagcacctcccgaacttcctcacctgtgtaccccgctgcctatggggctcccctgacctctcctgagccctcccagcctccatgtgctgtgtgcattgggcaccgggatgcccctcgagcctcttcgccccctcgctatttgcagcacgaccccttccccttcttcccagagccccgcgcccctgagagtgaaccgccccaccacgagcctccctatataccacctgctgtgtgcattggacaccgagatgccccccgggcgtcctcgcccccccgccacacccaatttgaccccttccccttcctcccagacacatcagatgccgagcatcagtgtcagtccccccaacacgagccccttcagctccctgcacctgtgtgtattgggtaccgagatgcaccccgggcctcctccccaccacgccaggccccagagccttccctcttattccaggacctccccagggccagcacagagagccttgtcccttccatggactctctgcacgagtgcccccacatccccacccctgtgtgcattgggcaccgggatgcaccctccttctcatccccaccacgccaggctcctgagccatccctcttcttccaggatccccctggaactagtatggagagcctggccccctccactgactctctgcatggctccccagtgctgatcccccaagtgtgcatcgggcaccgggatgcaccccgagcctcctccccaccccgccacccacccagtgacctagcgttcctggcaccctcaccttcaccgggcagctctgggggctcccggggctcagcgcctcccggggagaccaggcacaacttggagcgggaggagtacactgtgctggccgacctgcccccacccaggaggctggcccagagacagccagggccccaggcgcagtgcagcagcgggggccgcacccacagccctggccgtgcagaggtggagcgcctcttcgggcaagagcgcaggaagtccgaggcagcgggggccttccaggcccaggacgagggacggtcacagcagcccagccaaggccagagccaacttctccgaagacagtccagccctgcccccagcaggcaggtgaccatgctccctgccaaacaggcagaactgacccggcggagccaagcagagccccctcatccttggagtcctgagaagagacctgagggagatcggcagctccaggggtccccgctgccccccaggacatcagccaggacccctgagagggagctgcggacacagagacctctggagagtggccaagcaggcccaagacagcctctgggggtgtggcagagtcaggaggaaccgccagggtcccagggccctcatagacacctagaaaggagctggagcagccaggagggaggcctgggccctgggggctggtggggatgtggagagcccagcctgggggcagccaaagccccggagggagcatgggggggcacttccagggagtacaaggagagctgggggcagccagaggcctgggaggagaagcccactcatgagctccccagagaactaggaaagagaagcccactcacgagcccccctgagaactggggaggccccgcagagtcctcacaatcctggcactctgggacacccactgctgtgggctggggggcagagggagcgtgtccatacccgcgtggctctgagaggcgacccgagcttgactggagggatctgcttggccttctccgggcaccaggagagggggtctgggcccgtgtccccagcctggactgggagggcctcttggagctcctgcaggccaggctgccccgcaaggacccagctggacacagggatgacctggccagggctttagggccagagctgggtcccccaggcacaaacgatgtccctgagcaggagtcacacagccagccagaaggctgggccgaggccaccccagtcaatggacacagccccgcactgcagtcccagagcccggtccagctgcccagccctgcctgcacctccacccagtggccaaagatcaaagtgacaagaggaccagcgaccgcaactctggcaggcctggagcagacgggccccctggggagcaggagcactgcgaagggccccagcttgccagagctgcagttccaaccagaggagcctgaggagtcagaaccaagcagaggccaagaccccctgactgaccagaagcaggcagactcggcagacaagaggccagcagagggcaaggctgggagcccgctcaagggccgactggtgacctcatggcggatgcccggggaccggcccacgctgttcaatccgttcctgctgtctctgggggtcctcaggtggcgaaggcccgatctgctcaacttcaagaagggatggatgtcgatcttggacgagcctggagagcctccctccccctcgctcaccaccacctctacttcgcagtggaagaaacattggtttgtgctgacagattcaagtctcaaatattacagagactccactgctgaggaggcagatgagctggatggtgagatcgacctgcgttcctgcacggatgtcactgagtacgcggtgcagcgcaactatggcttccagatccacaccaaggatgctgtctataccttgtcggccatgacctcaggcatccggcggaactggatcgaggctctgagaaagaccgtacgtccaacttcagccccagatgtcaccaagctctcggactctaacaaggagaacgcgctgcacagctacagcacccagaagggccccctgaaggcaggggagcagcgggcgggctctgaggtcatcagccggggtggccctcggaaggcggacgggcagcgtcaggccttggactacgtggagctctcgccgctgacccaggcttccccgcagcgggcccgcaccccagcccgcactcctgaccgcctggccaagcaggaggagctggagcgggacctggcccagcgctccgaggagcggcgcaagtggtttgaggccacagacagcaggaccccagaggtgcctgctggtgaggggccgcgccggggcctgggtgcccccctgactgaggaccagcaaaaccggcttagtgaggagatcgagaagaagtggcaggagctggagaagctgcccctgcgggagaataagcgggtgcccctcactgccctgctcaaccaaagccgcggagagcgccgagggcccccaagtgacggccacgaggcactggagaaggaggttcaggctcttcgggcccagctggaggcgtggcgtctccaaggggaggctcctcagagtgcactgagatcccaggaggatggccacatccccccgggctacatctcacaggaggcatgtgagcgcagcctggcagagatggagtcctcgcaccagcaggtgatggaggagctgcagcggcaccacgagcgggagctgcagcgcctgcagcaggagaaggagtggctcctggctgaggagacggcagccacggcctcagccattgaagccatgaagaaggcctaccaggaagagctgagccgagagctgagcaaaacacggagtctccagcagggcccggatggcctccggaagcagcaccagtcagatgtggaggcactgaagcgagagctgcaggtgctatcggagcagtactcgcagaagtgcctggagattggggcactcatgcggcaggctgaggagcgcgagcacacgctgcgccgctgccagcaggagggccaggagctgctgcgccacaaccaggagctgcatggccgcctgtcagaggagatagaccagctgcgcggcttcattgcctcgcagggcatgggcaatggctgcgggcgcagcaacgagcggagttcctgcgagctagaggtgctgcttcgcgtaaaagaaaacgaactccagtacctaaagaaggaggtgcagtgcctccgggacgagctccagatgatgcagaagGGTCTGGTCGCCAGCAACCTGAATCTCAAACCTGGAGAGTGCCTTCGAGTGCGAGGCGAGGTGGCTCCTGACGCTAAGAGCTTCGTGCTGAACCTGGGCAAAGACAGCAACAACCTGTGCCTGCACTTCAACCCTCGCTTCAACGCCCACGGCGACGCCAACACCATCGTGTGCAACAGCAAGGACGGCGGGGCCTGGGGGACCGAGCAGCGGGAGGCTGTCTTTCCCTTCCAGCCTGGAAGTGTTGCAGAGGTGTGCATCACCTTCGACCAGGCCAACCTGACCGTCAAGCTGCCAGATGGATACGAATTCAAGTTCCCCAACCGCCTCAACCTGGAGGCCATCAACTACATGGCAGCTGACGGTGACTTCAAGATCAAATGTGTGGCCTTTGACTGA MEEVPGDALCEHFEANILTQNRCQNCFHPEEAHGARYQELRSPSGAEVPYCDLPRCPPAPEDPLSASTSGCQSVVDPGLRPGPKRGPSPSAGLPEEGPTAAPRSRSRELEAVPYLEGLTTSLCGSCNEDPGSDPTSSPDSATPDDTSNSSSVDWDTVERQEEEAPSWDELAVMIPRRPREGPRADSSQRAPSLLTRSPVGGDAAGQKKEDTGGGGRSAGQHWARLRGESGLSLERHRSTLTQASSMTPHSGPRSTTSQASPAQRDTAQAASTREIPRASSPHRITQRDTSRASSTQQEISRASSTQQETSRASSTQEDTPRASSTQEDTPRASSTQWNTPRASSPSRSTQLDNPRTSSTQQDNPQTSFPTCTPQRENPRTPCVQQDDPRASSPNRTTQRENSRTSCAQRDNPKASRTSSPNRATRDNPRTSCAQRDNPRASSPSRATRDNPTTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPSRATRDNPTTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRAARDNPTTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRATRDNPTTSCAQRDNPRASRTSSPNRATRDNPRTSCAQRDNPRASSPNRTTQQDSPRTSCARRDDPRASSPNRTIQQENPRTSCALRDNPRASSPSRTIQQENPRTSCAQRDDPRASSPNRTTQQENPRTSCARRDNPRASSRNRTIQRDNPRTSCAQRDNPRASSPNRTIQQENLRTSCTRQDNPRTSSPNRATRDNPRTSCAQRDNLRASSPIRATQQDNPRTCIQQNIPRSSSTQQDNPKTSCTKRDNLRPTCTQRDRTQSFSFQRDNPGTSSSQCCTQKENLRPSSPHRSTQWNNPRNSSPHRTNKDIPWASFPLRPTQSDGPRTSSPSRSKQSEVPWASIALRPTQGDRPQTSSPSRPAQHDPPQSSFGPTQYNLPSRATSSSHNPGHQSTSRTSSPVYPAAYGAPLTSPEPSQPPCAVCIGHRDAPRASSPPRYLQHDPFPFFPEPRAPESEPPHHEPPYIPPAVCIGHRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPVCIGYRDAPRASSPPRQAPEPSLLFQDLPRASTESLVPSMDSLHECPHIPTPVCIGHRDAPSFSSPPRQAPEPSLFFQDPPGTSMESLAPSTDSLHGSPVLIPQVCIGHRDAPRASSPPRHPPSDLAFLAPSPSPGSSGGSRGSAPPGETRHNLEREEYTVLADLPPPRRLAQRQPGPQAQCSSGGRTHSPGRAEVERLFGQERRKSEAAGAFQAQDEGRSQQPSQGQSQLLRRQSSPAPSRQVTMLPAKQAELTRRSQAEPPHPWSPEKRPEGDRQLQGSPLPPRTSARTPERELRTQRPLESGQAGPRQPLGVWQSQEEPPGSQGPHRHLERSWSSQEGGLGPGGWWGCGEPSLGAAKAPEGAWGGTSREYKESWGQPEAWEEKPTHELPRELGKRSPLTSPPENWGGPAESSQSWHSGTPTAVGWGAEGACPYPRGSERRPELDWRDLLGLLRAPGEGVWARVPSLDWEGLLELLQARLPRKDPAGHRDDLARALGPELGPPGTNDVPEQESHSQPEGWAEATPVNGHSPALQSQSPVQLPSPACTSTQWPKIKVTRGPATATLAGLEQTGPLGSRSTAKGPSLPELQFQPEEPEESEPSRGQDPLTDQKQADSADKRPAEGKAGSPLKGRLVTSWRMPGDRPTLFNPFLLSLGVLRWRRPDLLNFKKGWMSILDEPGEPPSPSLTTTSTSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDSNKENALHSYSTQKGPLKAGEQRAGSEVISRGGPRKADGQRQALDYVELSPLTQASPQRARTPARTPDRLAKQEELERDLAQRSEERRKWFEATDSRTPEVPAGEGPRRGLGAPLTEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQEACERSLAEMESSHQQVMEELQRHHERELQRLQQEKEWLLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDGLRKQHQSDVEALKRELQVLSEQYSQKCLEIGALMRQAEEREHTLRRCQQEGQELLRHNQELHGRLSEEIDQLRGFIASQGMGNGCGRSNERSSCELEVLLRVKENELQYLKKEVQCLRDELQMMQKGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINYMAADGDFKIKCVAFD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30551 ARPC1A::TRRAP ENSG00000241685.10::ENSG00000196367.15 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4800 TRUE 1796 ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:99047655:+ chr7:98475556-98648454:+ chr7:98645278:+ chr7:99333597,chr7:99333597,chr7:99333593 chr7:99033522,chr7:99033519,chr7:99033519 NA NA chr7:98931220,chr7:98931220,chr7:98931216 chr7:98631145,chr7:98631142,chr7:98631142 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019"];INTRACHROMOSOMAL[chr7:0.31Mb] 10 10 10 4.76 ONLY_REF_SPLICE YES_LDAS 0.159 GT 1.9899 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 TRUE Prostate no_match TRUE Prostate adenocarcinoma PROSTATE no_match 98931040 TRUE 98579392 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 30554 SPRTN::DISC1 ENSG00000010072.16::ENSG00000162946.24 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1148 FALSE NA FALSE NA SPRTN ENSG00000010072.16 protein_coding + + chr1:231337104-231355023:+ chr1:231338604:+ chr1:231472850-231490769:+ chr1:231474350:+ DISC1 ENSG00000162946.24 protein_coding + + chr1:231626790-232041272:+ chr1:231693826:+ chr1:231762536-232177018:+ chr1:231829572:+ chr1:231339200,chr1:231339194 chr1:231649946,chr1:231649937 NA NA chr1:231474946,chr1:231474940 chr1:231785692,chr1:231785683 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SprT-like|45-153|3e-39^SprT-like|191-209|0.093 Glyoxalase_6|154-174|1.8^Glyoxalase_6|346-430|0.00013^COG4_N|350-392|0.0031^HALZ|352-360|6.5^Tropomyosin|353-498|0.087^UVR|356-385|0.00016^ADIP|365-411|0.21^CENP-F_leu_zip|371-389|0.068^HALZ|374-394|0.31^HALZ|454-476|2.2e-05^CENP-F_leu_zip|460-496|0.00013^ADIP|461-500|5.9e-05^SesA|515-569|0.019^ADIP|542-588|0.0062^COG4_N|542-583|0.29^CENP-F_leu_zip|546-678|0.088^Tropomyosin|546-588|0.00077^COG4_N|595-620|0.21^HALZ|607-617|3.5^COG4_N|635-655|4.4^ADIP|637-679|0.00063^CENP-F_leu_zip|642-713|0.017^HALZ|645-655|0.38^Tropomyosin|746-833|0.0011^CENP-F_leu_zip|787-837|7.6e-05^ADIP|794-833|0.28^HALZ|809-823|1.3^SesA|809-843|0.0048^COG4_N|810-840|0.49 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.27Mb] 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.1077 GT 1.9656 AG 1.8892 ENST00000391858.8 1-221 ENST00000439617.8 68-2565 chr1|+|[0]231338384-231338604[1]<==>chr1|+|[1]231693826-231694805[2]|[0]231701955-231702024[0]|[1]231749926-231750076[1]|[2]231767140-231767269[2]|[0]231770835-231771070[1]|[2]231795242-231795296[2]|[0]231800108-231800210[0]|[1]231818329-231818517[0]|[1]231958828-231958888[1]|[2]232008785-232009049[2]|[0]232026435-232026552[0]|[1]232036692-232036831[2] atggatgatgacttgatgttggcactgcggcttcaggaggagtggaacttgcaggaggcggagcgcgatcatgcccaggagtccctgtcgctagtggacgcgtcgtgggagttggtggaccccacaccggacttgcaggcactgtttgttcagtttaacgaccaattcttctggggccagctggaggccgtcgaggtgaagtggagcgtgcgaatgaccctGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCGGCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTGGCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGCAGCAGCCCCTACTGTGACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAGAGTTTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTATGATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAGGTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCATAAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTGAGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAAATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGAAACAAGTGTGAAGGAAAATACTATGAAGTACATGGAAACACTTAAGAATAAACTGTGCAGCTGCAAGTGTCCACTGCTTGGGAAAGTGTGGGAAGCTGACTTGGAAGCTTGTCGATTGCTTATCCAGAGCCTACAGCTCCAGGAAGCCAGGGGAAGCCTGTCTGTAGAAGATGAGAGGCAGATGGATGACTTAGAGGGAGCTGCTCCTCCTATTCCCCCCAGGCTCCACTCCGAGGATAAAAGGAAGACCCCTTTGAAGGTATTGGAAGAATGGAAGACTCACCTCATCCCCTCTCTGCACTGTGCTGGAGGTGAACAGAAAGAGGAATCTTACATCCTTTCTGCAGAACTTGGAGAAAAGTGTGAAGACATAGGCAAGAAGCTATTGTACTTGGAAGATCAACTTCACACAGCAATCCACAGTCATGATGAAGATCTCATTCAGTCTCTCAGGAGGGAGCTCCAGATGGTGAAGGAAACTCTGCAGGCCATGATCCTGCAGCTCCAGCCAGCAAAGGAGGCGGGAGAAAGAGAAGCTGCAGCTTCCTGCATGACAGCTGGTGTCCACGAAGCACAAGCCTGA MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLQPGLLTTCSVLSEAAAGTEAGLHEKLDRAWDRVPFPSSGHTVPVPRRGVWRGVPPLGVQGQTVWP*LERPLGPEPCFQECSSPYCDLCERNLGALWDSAQRWHQIA*QA*LAVWPWECWVAARVCSHG*F*DPGRQLGGSLQRWSKACPGSRLSAISRVE*QQLQPWLWP*GPPNPSWLSQCLYLKL*LYSALAWLCRGTWRSRRLPTIQRG*VPLPEPPGDGSQSCQLGRASRGPAMSLSALQSLGYTGLCRLGPGRKEQLQARA*HAFFTRHGPWLLQFSGSLTGWLWW*WEQRLRGCPLLGHPAQEMGASAAGLPAEKPEADGGNILKIKTSETSGRCS*E**L**S*DVTTKIRRPGTRENQPALSTSFKAASS*QFPGSPGSTSPGCLAPWGHSAGQRR*HPHPTENGAEAVGTHCSGQLARVHHETRLASSGKAAATERNRSSPSKDVCAGSQRSTAEKGNRGARAATPVAGLRPDPTGGPAVPGSAAGGQQGLAGHPGLSRSDSLPCRATGNHKEPPGKNKIPQLVT*RNHY*GVYE*EILQHPEEES*RY*NPTTSLA*SQNACHIRKPFLDG*RPHRGD*IINIRERRAGGTPQQAVGVEFQECQKAGKC*RRLQQTEKRSGAPGDCL*NKCEGKYYEVHGNT*E*TVQLQVSTAWESVGS*LGSLSIAYPEPTAPGSQGKPVCRR*EADG*LRGSCSSYSPQAPLRG*KEDPFEGIGRMEDSPHPLSALCWR*TERGILHPFCRTWRKV*RHRQEAIVLGRSTSHSNPQS**RSHSVSQEGAPDGEGNSAGHDPAAPASKGGGRKRSCSFLHDSWCPRSTSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30556 LSM14A::GPI ENSG00000257103.9::ENSG00000105220.17 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LSM14A ENSG00000257103.9 protein_coding + + chr19:34172504-34229288:+ chr19:34196763:+ chr19:34663409-34720193:+ chr19:34687668:+ GPI ENSG00000105220.17 protein_coding + + chr19:34359480-34402413:+ chr19:34364810:+ chr19:34850385-34893318:+ chr19:34855715:+ chr19:34201415,chr19:34201414 chr19:34361794,chr19:34361790 NA NA chr19:34692320,chr19:34692319 chr19:34852699,chr19:34852695 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.13Mb] 8 12 8 12 ONLY_REF_SPLICE YES_LDAS 0.2155 GT 1.2867 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE LSM14A, SCD6 homolog A (S. cerevisiae) 2 Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30559 PLEKHA5::ENSG00000255648 ENSG00000052126.17::ENSG00000255648.1 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHA5 ENSG00000052126.17 protein_coding + + chr12:19129669-19376400:+ chr12:19132450:+ chr12:19282603-19529334:+ chr12:19285384:+ ENSG00000255648 ENSG00000255648.1 lncRNA + + chr12:18714795-18737878:+ chr12:18737514:+ chr12:18867729-18890812:+ chr12:18890448:+ chr12:19184548,chr12:19184549 chr12:18715779,chr12:18715777 NA NA chr12:19337482,chr12:19337483 chr12:18868713,chr12:18868711 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 6 4 6 ONLY_REF_SPLICE YES_LDAS 0.1077 GT 1.4716 AG 1.2729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30560 GON4L::ARHGEF2 ENSG00000116580.20::ENSG00000116584.22 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1144 FALSE NA FALSE NA GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155763312:- chr1:155719450-155829191:- chr1:155733103:- ARHGEF2 ENSG00000116584.22 protein_coding - - chr1:155946851-156007070:- chr1:155963183:- chr1:155916642-155976861:- chr1:155932974:- chr1:155763233,chr1:155763233,chr1:155763242 chr1:155963873,chr1:155963872,chr1:155963873 NA NA chr1:155733024,chr1:155733024,chr1:155733033 chr1:155933664,chr1:155933663,chr1:155933664 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PAH|572-599|0.096^DUF2789|642-698|0.00024^TelK_muzzle|645-708|6.1e-05^Myb_DNA-bind_6|826-875|0.21^Myb_DNA-binding|826-839|3.2^Myb_DNA-binding_7|856-871|5.4^CtnDOT_TraJ|1145-1178|4.1e-05^PAH|1648-1693|1.8e-10^PAH|1732-1774|1.2e-08^Myb_DNA-binding_7|2156-2204|1.5e-29^Myb_DNA-bind_6|2156-2200|1.2e-06^Myb_DNA-binding|2156-2200|6.2e-06^PAH|2195-2204|2.4 none ["ARHGEF2:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.09Mb];LOCAL_REARRANGEMENT:-:[87451] 4 25 4 25 ONLY_REF_SPLICE YES_LDAS 0.3124 GT 1.7819 AG 1.8892 ENST00000368331.6 1-4726 ENST00000313667.8 722-2958 chr1|-|[0]155763312-155763564[0]|[2]155765000-155766709[0]|[2]155767425-155767541[0]|[2]155771067-155771217[2]|[1]155773066-155773210[1]|[0]155775002-155775173[0]|[2]155776395-155776481[0]|[2]155777622-155777820[2]|[1]155783986-155784089[0]|[2]155785334-155785374[1]|[0]155795050-155795151[1]|[0]155804949-155805141[0]|[2]155813634-155813804[0]|[2]155814330-155814449[0]|[2]155815805-155815900[0]|[2]155816212-155816262[0]|[2]155820606-155820656[0]|[2]155821474-155821548[0]|[2]155822286-155822476[1]|[0]155826837-155827028[1]|[0]155853276-155853780[0]<==>chr1|-|[2]155947942-155948015[1]|[0]155950299-155950482[0]|[2]155950829-155951272[0]|[2]155951483-155951533[0]|[2]155951741-155951776[0]|[2]155951919-155951986[1]|[0]155952116-155952235[1]|[0]155952628-155952828[1]|[0]155954902-155954969[2]|[1]155957713-155957882[0]|[2]155958320-155958396[1]|[0]155961661-155961909[1]|[0]155962105-155962222[0]|[2]155962593-155962718[0]|[2]155962933-155963183[1] atgttgccctgtaagaagagaagaactacagtgacagagtccctacagcataaaggcaatcaagaggaaaacaacgtagacctagaatcagccgttaaaccagaatctgaccaggttaaggacttgagttcggtgtcactatcctgggatccaagtcatggcagagtagctggcttcgaagtacagtctttgcaggatgcaggaaatcagcttggtatggaggatacatctctgagctctggaatgctcacccagaacacaaatgtaccaattctagaaggtgttgatgtggccatctctcagggaatcaccctaccttccttggagtcttttcacccccttaatatacacattggtaaaggaaaactccacgctactggctcaaagagagggaaaaaaatgacactcaggcctgggccagttacccaagaagacagatgtgatcatcttaccctaaaggagcctttttcaggagagcctagtgaagaagtcaaggaagaaggagggaaacctcaaatgaattctgaaggggagataccttccctgccatcaggcagccaatctgcaaaaccagtaagccagcccaggaaatcaacccagccagatgtttgtgcctctcctcaagaaaagccactcaggactctgtttcaccaacctgaggaagagatagaagatggtggactcttcattccaatggaagaacaagacaatgaagaaagtgagaaaaggagaaaaaagaaaaagggtaccaagaggaaacgagatggaaggggtcaagaagggaccttggcatatgacctgaaactggatgacatgcttgaccgtaccttggaggatggtgccaagcagcacaatctaacagcagtcaatgtccgaaacatccttcatgaagtaatcacaaatgaacacgtggtagctatgatgaaagcagccatcagtgagacggaagatatgccaatgtttgagcctaaaatgacacgctctaaactgaaggaagtagtggaaaaaggagtggtaattccaacatggaatatttcaccaattaagaaggccaatgaaattaagcctcctcagtttgtggatatccaccttgaagaagatgattcctcagatgaagaataccagccggatgatgaagaagaagatgaaactgctgaagagagcttattggaaagtgatgttgaaagcactgcttcatctccacgtggggcaaagaaatccagattgaggcagtcttctgagatgactgaaacagatgaggagagtggcatattatcagaggctgagaaagtcaccacaccagccatcaggcacatcagtgctgaggtagtgcccatggggcccccgccccctccaaagccgaaacagaccagagatagtactttcatggagaagttacatgcggtagatgaggagctggcttccagtccagtctgcatggattctttccagcccatggatgacagtctcattgcatttcgaacgcgttctaagatgcccctgaaagatgttcccctgggccaattagaggcagagctccaagctccagacatcactccagatatgtatgaccccaatacggcagatgatgaggactggaagatgtggctggggggacttatgaatgatgatgtggggaatgaagatgaagcagatgatgatgatgatccagaatataatttcctggaagacctcgatgaaccagacacagaggatttccggactgaccgggcagtgagaatcaccaaaaaggaagtaaatgagctgatggaagagctgtttgaaactttccaagatgagatgggattctccaacatggaagatgatggcccagaagaggaggagtgtgtagctgagcctcgtcctaactttaacacccctcaagctctacggtttgaggaaccactggccaacctgttaaatgaacaacatcggacagtgaaggagctatttgaacagctgaagatgaagaaatcttcagccaaacagctgcaggaagtagagaaggttaaaccccagagtgagaaagttcatcagactctgattctggacccagcacagaggaagagactccagcagcagatgcagcagcacgttcagctcttgacccaaatccaccttcttgccacctgcaaccccaacctcaatccggaggccactaccaccaggatatttcttaaagagctgggaacctttgctcaaagctccatcgcccttcaccatcagtacaaccccaagtttcagaccctgttccaaccctgtaacttgatgggagctatgcagctgattgaagacttcagcacacatgtcagcattgactgcagccctcataaaactgtcaagaagactgcgaatgaatttccctgtttgccaaagcaagtggcttggattctggccacaagcaaggttttcatgtatccagagttacttccagtgtgttccctgaaggcaaagaatccccaggataagatcgtcttcaccaaggctgaggacaatttgttagctttaggactgaagcattttgaaggaactgagtttcctaatcctctaatcagcaagtaccttctaacctgcaaaactgcccaccaactgacagtgagaatcaagaacctcaacatgaacagagctcctgacaacatcattaaattttataagaagaccaaacagctgccagtcctaggaaaatgctgtgaagagatccagccacatcagtggaagccacctatagagagagaagaacaccggctcccattctggttaaaggccagtctgccatccatccaggaagaactgcggcacatggctgatggtgctagagaggtaggaaatatgactggaaccactgagatcaactcagatcgaagcctagaaaaagacaatttggagttggggagtgaatctcggtacccactgctattgcctaagggtgtagtcctgaaactgaagccagttgccacccgtttccccaggaaggcttggagacagaagcgttcatcagtcctgaagcccctccttatccaacccagcccctctctccagcccagcttcaaccctgggaaaacaccagcccgatcaactcattcagaagcccctccgagcaaaatggtgctccggattcctcacccaatacagccagccactgttttacagacagttccaggtgtccctccactgggggtcagtggaggtgagagttttgagtctcctgcagcactgcctgctgtgccccctgaggccaggacaagcttccctctgtctgagtcccagactttgctctcttctgcccctgtgcccaaggtaatgctgccctcccttgccccttctaagtttcgaaagccatatgtgagacggagaccctcaaagagaagaggagtcaaggcctctccctgtatgaaacctgcccctgttatccaccaccctgcatctgttatcttcactgttcctgctaccactgtgaagattgtgagccttggcggtggctgtaacatgatccagcctgtcaatgcggctgtggcccagagtccccagactattcccatcactaccctcttggttaaccctacttccttcccctgtccattgaaccagtcccttgtggcctcctctgtctcacccttaattgtttctggcaattctgtgaatcttcctataccatccacccctgaagataaggcccacgtgaatgtggacattgcttgtgctgtggctgatggggaaaatgcctttcagggcctagaacccaaattagagccccaggaactatctcctctctctgctactgttttcccgaaagtggaacatagcccagggcctccactagcagatgcagagtgccaagaaggattgtcagagaatagtgcctgtcgctggaccgttgtgaaaacagaggaggggaggcaagctctggagccgctccctcagggcatccaggagtctctaaacaaccctacccctggggatttagaggaaattgtcaagatggaacctgaagaagctagagaggaaatcagtggatcccctgagcgtgatatttgtgatgacatcaaagtggaacatgctgtggaattggacactggtgccccaagcgaggagttgagcagtgctggagaagtaacgaaacagacagtcttacagaaggaagaggagaggagtcagccaactaaaaccccttcatcttctcaagagccccctgatgaaggaacctcagggacagatgtgaacaaaggatcatcaaagaatgctttgtcctcaatggatcctgaagtgaggcttagtagccccccagggaagccagaagattcatccagtgttgatggtcagtcagtggggactccagttgggccagaaactggaggagagaagaatgggccagaagaagaggaagaagaggactttgatgacctcacccaagatgaggaagatgaaatgtcatcagcttctgaggaatctgtgctttctgtcccagaactccaggaaacaatggagaaactgacttggctggcatctgaaaggcgcatgagtcaggagggtgagtctgaagaagagaattctcaggaggagaactctgagccagaagaagaggaggaagaagaagcagaaggaatggaaagcctgcagaaagaggatgaaatgacggatgaagcagttggagactctgctgagaagcctcctacttttgcttcacctgagactgctccagaagtggagaccagcagaactccaccagAGCTAATCCAGACAGAGCTGCACCATGTGAGGACACTGAAGATCATGACCCGCCTCTTCCGCACGGGGATGCTGGAAGAGCTACACTTGGAGCCAGGAGTGGTCCAGGGCCTGTTCCCCTGCGTGGACGAGCTCAGTGACATCCATACACGCTTCCTCAGCCAGCTATTAGAACGCCGACGCCAGGCCCTGTGCCCTGGCAGCACCCGGAACTTTGTCATCCATCGCTTGGGTGATCTGCTCATCAGCCAGTTCTCAGGTCCTAGTGCGGAGCAGATGTGTAAGACCTACTCGGAGTTCTGCAGCCGCCACAGCAAGGCCTTAAAGCTCTATAAGGAGCTGTACGCCCGAGACAAACGCTTCCAGCAATTCATCCGGAAAGTGACCCGCCCCGCCGTGCTCAAGCGGCACGGGGTACAGGAGTGCATCCTGCTGGTGACTCAGCGCATCACCAAGTACCCGTTACTCATCAGCCGCATCCTGCAGCATTCCCACGGGATCGAGGAGGAGCGCCAGGACCTGACCACAGCACTGGGGCTAGTGAAGGAGCTGCTGTCCAATGTGGACGAGGGTATTTATCAGCTGGAGAAAGGGGCCCGTCTGCAGGAGATCTACAACCGCATGGACCCTCGGGCCCAAACCCCAGTGCCTGGCAAGGGCCCCTTTGGCCGAGAGGAACTTCTGAGGCGCAAACTCATCCACGATGGCTGCCTGCTCTGGAAGACAGCGACGGGGCGCTTCAAAGATGTGCTAGTGCTGCTGATGACAGATGTACTGGTGTTTCTCCAGGAAAAGGACCAGAAGTACATCTTTCCTACCCTGGACAAGCCTTCAGTGGTATCGCTGCAGAATCTAATCGTACGAGACATTGCCAACCAGGAGAAAGGGATGTTTCTGATCAGCGCAGCCCCACCTGAGATGTACGAGGTGCACACAGCATCCCGGGATGACCGGAGCACCTGGATCCGGGTCATTCAGCAGAGCGTGCGCACATGCCCATCCAGGGAGGACTTCCCCCTGATTGAGACAGAGGATGAGGCTTACCTGCGGCGAATTAAGATGGAGTTGCAGCAGAAGGACCGGGCACTGGTGGAGCTGCTGCGAGAGAAGGTCGGGCTGTTTGCTGAGATGACCCATTTCCAGGCCGAAGAGGATGGTGGCAGTGGGATGGCCCTGCCCACCCTGCCCAGGGGCCTTTTCCGCTCTGAGTCCCTTGAGTCCCCTCGTGGCGAGCGGCTGCTGCAGGATGCCATCCGTGAGGTGGAGGGTCTGAAAGACCTGCTGGTGGGGCCAGGAGTGGAACTGCTCTTGACACCCCGAGAGCCAGCCCTGCCCTTGGAACCAGACAGCGGTGGTAACACGAGTCCTGGGGTCACTGCCAATGGTGAGGCCAGAACCTTCAATGGCTCCATTGAACTCTGCAGAGCTGACTCAGACTCTAGCCAGAGGGATCGAAATGGAAATCAGCTGAGATCACCGCAAGAGGAGGCGTTACAGCGATTGGTCAATCTCTATGGACTTCTACATGGCCTACAGGCAGCTGTGGCCCAGCAGGACACTCTGATGGAAGCCCGGTTCCCTGAGGGCCCTGAGCGGCGGGAGAAGCTGTGCCGAGCCAACTCTCGGGATGGGGAGGCTGGCAGGGCTGGGGCTGCCCCTGTGGCCCCTGAAAAGCAGGCCACGGAACTGGCATTACTGCAGCGGCAACATGCGCTGCTGCAGGAGGAGCTACGGCGCTGCCGGCGGCTAGGTGAAGAACGGGCAACCGAAGCTGGCAGCCTGGAGGCCCGGCTCCGGGAGAGTGAGCAGGCCCGGGCACTGCTGGAGCGTGAGGCCGAAGAGGCTCGAAGGCAGCTGGCCGCCCTGGGCCAGACCGAGCCACTCCCAGCTGAGGCCCCCTGGGCCCGCAGACCTGTGGATCCTCGGCGGCGCAGCCTCCCCGCAGGCGATGCCCTGTACTTGAGTTTCAACCCCCCACAGCCCAGCCGAGGCACTGACCGCCTGGATCTACCTGTCACTACTCGCTCTGTCCATCGAAACTTTGAGGACCGAGAGAGGCAGGAACTGGGGAGCCCCGAAGAGCGGCTGCAAGACAGCAGTGACCCTGACACTGGCAGCGAGGAGGAAGGTAGCAGCCGTCTGTCTCCGCCCCACAGTCCACGAGACTTTACCAGAATGCAGGACATCCCGGAGGAGACGGAGAGCCGCGACGGGGAGGCTGTAGCCTCCGAGAGCTAA MLPCKKRRTTVTESLQHKGNQEENNVDLESAVKPESDQVKDLSSVSLSWDPSHGRVAGFEVQSLQDAGNQLGMEDTSLSSGMLTQNTNVPILEGVDVAISQGITLPSLESFHPLNIHIGKGKLHATGSKRGKKMTLRPGPVTQEDRCDHLTLKEPFSGEPSEEVKEEGGKPQMNSEGEIPSLPSGSQSAKPVSQPRKSTQPDVCASPQEKPLRTLFHQPEEEIEDGGLFIPMEEQDNEESEKRRKKKKGTKRKRDGRGQEGTLAYDLKLDDMLDRTLEDGAKQHNLTAVNVRNILHEVITNEHVVAMMKAAISETEDMPMFEPKMTRSKLKEVVEKGVVIPTWNISPIKKANEIKPPQFVDIHLEEDDSSDEEYQPDDEEEDETAEESLLESDVESTASSPRGAKKSRLRQSSEMTETDEESGILSEAEKVTTPAIRHISAEVVPMGPPPPPKPKQTRDSTFMEKLHAVDEELASSPVCMDSFQPMDDSLIAFRTRSKMPLKDVPLGQLEAELQAPDITPDMYDPNTADDEDWKMWLGGLMNDDVGNEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNELMEELFETFQDEMGFSNMEDDGPEEEECVAEPRPNFNTPQALRFEEPLANLLNEQHRTVKELFEQLKMKKSSAKQLQEVEKVKPQSEKVHQTLILDPAQRKRLQQQMQQHVQLLTQIHLLATCNPNLNPEATTTRIFLKELGTFAQSSIALHHQYNPKFQTLFQPCNLMGAMQLIEDFSTHVSIDCSPHKTVKKTANEFPCLPKQVAWILATSKVFMYPELLPVCSLKAKNPQDKIVFTKAEDNLLALGLKHFEGTEFPNPLISKYLLTCKTAHQLTVRIKNLNMNRAPDNIIKFYKKTKQLPVLGKCCEEIQPHQWKPPIEREEHRLPFWLKASLPSIQEELRHMADGAREVGNMTGTTEINSDRSLEKDNLELGSESRYPLLLPKGVVLKLKPVATRFPRKAWRQKRSSVLKPLLIQPSPSLQPSFNPGKTPARSTHSEAPPSKMVLRIPHPIQPATVLQTVPGVPPLGVSGGESFESPAALPAVPPEARTSFPLSESQTLLSSAPVPKVMLPSLAPSKFRKPYVRRRPSKRRGVKASPCMKPAPVIHHPASVIFTVPATTVKIVSLGGGCNMIQPVNAAVAQSPQTIPITTLLVNPTSFPCPLNQSLVASSVSPLIVSGNSVNLPIPSTPEDKAHVNVDIACAVADGENAFQGLEPKLEPQELSPLSATVFPKVEHSPGPPLADAECQEGLSENSACRWTVVKTEEGRQALEPLPQGIQESLNNPTPGDLEEIVKMEPEEAREEISGSPERDICDDIKVEHAVELDTGAPSEELSSAGEVTKQTVLQKEEERSQPTKTPSSSQEPPDEGTSGTDVNKGSSKNALSSMDPEVRLSSPPGKPEDSSSVDGQSVGTPVGPETGGEKNGPEEEEEEDFDDLTQDEEDEMSSASEESVLSVPELQETMEKLTWLASERRMSQEGESEEENSQEENSEPEEEEEEEAEGMESLQKEDEMTDEAVGDSAEKPPTFASPETAPEVETSRTPPELIQTELHHVRTLKIMTRLFRTGMLEELHLEPGVVQGLFPCVDELSDIHTRFLSQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGPSAEQMCKTYSEFCSRHSKALKLYKELYARDKRFQQFIRKVTRPAVLKRHGVQECILLVTQRITKYPLLISRILQHSHGIEEERQDLTTALGLVKELLSNVDEGIYQLEKGARLQEIYNRMDPRAQTPVPGKGPFGREELLRRKLIHDGCLLWKTATGRFKDVLVLLMTDVLVFLQEKDQKYIFPTLDKPSVVSLQNLIVRDIANQEKGMFLISAAPPEMYEVHTASRDDRSTWIRVIQQSVRTCPSREDFPLIETEDEAYLRRIKMELQQKDRALVELLREKVGLFAEMTHFQAEEDGGSGMALPTLPRGLFRSESLESPRGERLLQDAIREVEGLKDLLVGPGVELLLTPREPALPLEPDSGGNTSPGVTANGEARTFNGSIELCRADSDSSQRDRNGNQLRSPQEEALQRLVNLYGLLHGLQAAVAQQDTLMEARFPEGPERREKLCRANSRDGEAGRAGAAPVAPEKQATELALLQRQHALLQEELRRCRRLGEERATEAGSLEARLRESEQARALLEREAEEARRQLAALGQTEPLPAEAPWARRPVDPRRRSLPAGDALYLSFNPPQPSRGTDRLDLPVTTRSVHRNFEDRERQELGSPEERLQDSSDPDTGSEEEGSSRLSPPHSPRDFTRMQDIPEETESRDGEAVASES* FALSE FALSE NA NA TRUE hsa-mir-6738 chr1:155951273-155951336:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Breast,Uterus_cervix,Adrenal,Ovary no_match TRUE Cervical squamous cell carcinoma and endocervical adenocarcinoma,Bladder Urothelial Carcinoma CERVIX,BLADDER no_match 155746186,155823067 FALSE,FALSE 155939091,155922619 FALSE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30561 BOLA3::CCDC142 ENSG00000163170.12::ENSG00000135637.14 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1147 FALSE NA FALSE NA BOLA3 ENSG00000163170.12 protein_coding - - chr2:74135400-74147912:- chr2:74142272:- chr2:74362527-74375039:- chr2:74369399:- CCDC142 ENSG00000135637.14 protein_coding - - chr2:74471986-74483408:- chr2:74472796:- chr2:74699113-74710535:- chr2:74699923:- chr2:74138405,chr2:74138410 chr2:74473584,chr2:74473586 NA NA chr2:74365532,chr2:74365537 chr2:74700711,chr2:74700713 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Glucokinase|23-102|9e-06^RNA_binding|24-93|6.9e-06^BolA|58-105|4.3e-15 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.32Mb] 3 8 3 8 ONLY_REF_SPLICE YES_LDAS 0.1185 GT 1.9329 AG 1.8256 ENST00000327428.10 1-258 ENST00000454193.5 1702-1703 chr2|-|[2]74142272-74142360[1]|[0]74145189-74145303[0]|[2]74147821-74147874[0]<==>chr2|-|[2]74472795-74472796[1] atggctgcatggagcccggccgcggcagcgcctctcctccgcgggatccgcgggcttccacttcaccatcggatgtttgccactcagactgagggggagctcagagtgacccaaattctcaaagaaaagtttccacgagctacagctataaaagtcactgacatttcaggaggttgtggggcgatgtatgaaattaaaattgaatcagaagaatttaaggagaagagaactgtccagcagcaccagatggttaatcagGA MAAWSPAAAAPLLRGIRGLPLHHRMFATQTEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQ FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30562 ARPC1A::TRRAP ENSG00000241685.10::ENSG00000196367.15 GCIY SRR8615733 SRR8639231 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4800 TRUE 1796 ARPC1A ENSG00000241685.10 protein_coding + + chr7:99325898-99366262:+ chr7:99333417:+ chr7:98923521-98963885:+ chr7:98931040:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:99039943:+ chr7:98475556-98648454:+ chr7:98637566:+ chr7:99333597,chr7:99333597,chr7:99333593 chr7:99033522,chr7:99033519,chr7:99033519 NA NA chr7:98931220,chr7:98931220,chr7:98931216 chr7:98631145,chr7:98631142,chr7:98631142 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019"];INTRACHROMOSOMAL[chr7:0.31Mb] 3 18 3 13.24 INCL_NON_REF_SPLICE YES_LDAS 0.1749 GT 1.9899 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 TRUE Prostate no_match TRUE Prostate adenocarcinoma PROSTATE no_match 98931040 TRUE 98579392 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 30565 ATP2A2::IFT81 ENSG00000174437.18::ENSG00000122970.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1149 FALSE NA FALSE NA ATP2A2 ENSG00000174437.18 protein_coding + + chr12:110280756-110351093:+ chr12:110334143:+ chr12:110718561-110788898:+ chr12:110771948:+ IFT81 ENSG00000122970.16 protein_coding + + chr12:110124335-110218793:+ chr12:110218044:+ chr12:110562140-110656598:+ chr12:110655849:+ chr12:110338402,chr12:110338400 chr12:110217756,chr12:110217751 NA NA chr12:110776207,chr12:110776205 chr12:110655561,chr12:110655556 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Cation_ATPase_N|5-72|5.3e-21^E1-E2_ATPase|44-100|0.004^Cation_ATPase_N|86-100|0.2^E1-E2_ATPase|124-329|8.3e-54^Hydrolase|347-369|0.02^Cation_ATPase|418-527|1.3e-27^Hydrolase|587-713|5.9e-14^HAD|605-711|1.3e-06^Hydrolase_3|685-742|8.9e-09^E1-E2_ATPase|733-779|1^HAD|762-784|2.2^Cation_ATPase_C|783-985|6.4e-50 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr12:0.06Mb];LOCAL_REARRANGEMENT:+:[61959] 479 420 479 420 ONLY_REF_SPLICE YES_LDAS 9.3537 GT 1.9086 AG 1.7232 ENST00000539276.7 1-1419 ENST00000242591.10 1849-2031 chr12|+|[0]110281790-110281907[0]|[1]110282604-110282621[0]|[1]110282713-110282795[2]|[0]110292020-110292124[2]|[0]110296599-110296737[0]|[1]110322992-110323072[0]|[1]110326390-110326475[2]|[0]110327553-110328017[2]|[0]110332597-110332685[1]|[2]110333181-110333283[2]|[0]110334012-110334143[2]<==>chr12|+|[0]110218044-110218226[2] atggagaacgcgcacaccaagacggtggaggaggtgctgggccacttcggcgtcaacgagagtacggggctgagcctggaacaggtcaagaagcttaaggagagatggggctccaacgagttaccggctgaagaaggaaaaaccttgctggaacttgtgattgagcagtttgaagacttgctagttaggattttattactggcagcatgtatatcttttgttttggcttggtttgaagaaggtgaagaaacaattacagcctttgtagaaccttttgtaattttactcatattagtagccaatgcaattgtgggtgtatggcaggaaagaaatgctgaaaatgccatcgaagcccttaaggaatatgagcctgaaatgggcaaagtgtatcgacaggacagaaagagtgtgcagcggattaaagctaaagacatagttcctggtgatattgtagaaattgctgttggtgacaaagttcctgctgatataaggttaacttccatcaaatctaccacactaagagttgaccagtcaattctcacaggtgaatctgtctctgtcatcaagcacactgatcccgtccctgacccacgagctgtcaaccaagataaaaagaacatgctgttttctggtacaaacattgctgctgggaaagctatgggagtggtggtagcaactggagttaacaccgaaattggcaagatccgggatgaaatggtggcaacagaacaggagagaacaccccttcagcaaaaactagatgaatttggggaacagctttccaaagtcatctcccttatttgcattgcagtctggatcataaatattgggcacttcaatgacccggttcatggagggtcctggatcagaggtgctatttactactttaaaattgcagtggccctggctgtagcagccattcctgaaggtctgcctgcagtcatcaccacctgcctggctcttggaactcgcagaatggcaaagaaaaatgccattgttcgaagcctcccgtctgtggaaacccttggttgtacttctgttatctgctcagacaagactggtacacttacaacaaaccagatgtcagtctgcaggatgttcattctggacagagtggaaggtgatacttgttcccttaatgagtttaccataactggatcaacttatgcacctattggagaagtgcataaagatgataaaccagtgaattgtcaccagtatgatggtctggtagaattagcaacaatttgtgctctttgtaatgactctgctttggattacaatgaggcaaagggtgtgtatgaaaaagttggagaagctacagagactgctctcacttgcctagtagagaagatgaatgtatttgataccgaattgaagggtctttctaaaatagaacgtgcaaatgcctgcaactcaAAACTTCGGGAAAAACAAAAAGTTATACGAGAAAGTCATGGTCCAAATATGAAACAAGCAAAAATGTGGCGTGATTTGGAACAATTAATGGAATGTAAGAAACAGTGCTTTCTGAAACAACAAAGCCAAACTTCCATTGGTCAGGTAATTCAGGAGGGTGGGGAGGACCGGCTAATACTGTGA MENAHTKTVEEVLGHFGVNESTGLSLEQVKKLKERWGSNELPAEEGKTLLELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILVANAIVGVWQERNAENAIEALKEYEPEMGKVYRQDRKSVQRIKAKDIVPGDIVEIAVGDKVPADIRLTSIKSTTLRVDQSILTGESVSVIKHTDPVPDPRAVNQDKKNMLFSGTNIAAGKAMGVVVATGVNTEIGKIRDEMVATEQERTPLQQKLDEFGEQLSKVISLICIAVWIINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCRMFILDRVEGDTCSLNEFTITGSTYAPIGEVHKDDKPVNCHQYDGLVELATICALCNDSALDYNEAKGVYEKVGEATETALTCLVEKMNVFDTELKGLSKIERANACNSKLREKQKVIRESHGPNMKQAKMWRDLEQLMECKKQCFLKQQSQTSIGQVIQEGGEDRLIL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma LUNG,LUNG,UTERUS,LIVER no_match 110734542,110720600|110720600,110765822,110734542|110720600|110734542 FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 110600724,110628725|110630422,110600724,110584758|110618227|110600724 FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY Out-of-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30566 BANP::CA5A ENSG00000172530.22::ENSG00000174990.8 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1153 FALSE NA FALSE NA BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:87951515:+ chr16:87982850-88110924:+ chr16:87985121:+ CA5A ENSG00000174990.8 protein_coding - - chr16:87881546-87936580:- chr16:87902520:- chr16:87915152-87970186:- chr16:87936126:- chr16:87952310,chr16:87952309 chr16:87904244,chr16:87904245 NA NA chr16:87985916,chr16:87985915 chr16:87937850,chr16:87937851 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_INVERSION:+:-:[12715] 71 2 71 2 ONLY_REF_SPLICE YES_LDAS 0.7595 GT 1.6729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30567 GMCL1::ANXA4 ENSG00000087338.5::ENSG00000196975.16 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1150 FALSE NA FALSE NA GMCL1 ENSG00000087338.5 protein_coding + + chr2:69829660-69881384:+ chr2:69849742:+ chr2:70056792-70108516:+ chr2:70076874:+ ANXA4 ENSG00000196975.16 protein_coding + + chr2:69644425-69827112:+ chr2:69804533:+ chr2:69871557-70054244:+ chr2:70031665:+ chr2:69852271,chr2:69852269 chr2:69796862,chr2:69796860 NA NA chr2:70079403,chr2:70079401 chr2:70023994,chr2:70023992 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BTB|99-206|2.1e-17^BTB|212-239|0.19^BACK|214-283|2.8e-09 Annexin-PARTIAL|~98-157|8.5e-28^TSLP-PARTIAL|~98-100|6.6e-05^UBA_2-PARTIAL|~98-123|0.53^Acetyltransf_6-PARTIAL|~98-161|0.00014^Myb_DNA-bind_7|99-132|0.15^RNAse_A_bac|118-156|2.2^Annexin|175-241|2.8e-28^Myb_DNA-bind_7|177-234|0.0018^TSLP|211-238|0.43^Annexin|251-316|1.8e-29^Myb_DNA-bind_7|254-277|0.064^RNAse_A_bac|273-298|1.1^TSLP|281-308|2.4 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.00Mb];LOCAL_REARRANGEMENT:+:[3178] 40 54 40 53.69 ONLY_REF_SPLICE YES_LDAS 0.9748 GT 1.6402 AG 1.8256 ENST00000282570.4 1-934 ENST00000394295.6 98-966 chr2|+|[0]69829893-69830152[1]|[2]69837547-69837670[2]|[0]69839457-69839553[0]|[1]69840942-69841039[2]|[0]69843149-69843261[1]|[2]69844131-69844196[1]|[2]69847543-69847627[2]|[0]69849652-69849742[0]<==>chr2|+|[1]69804533-69804627[2]|[0]69806385-69806498[2]|[0]69807906-69807996[0]|[1]69810594-69810673[2]|[0]69812653-69812709[2]|[0]69816101-69816194[0]|[1]69818599-69818694[0]|[1]69819280-69819338[2]|[0]69820699-69820821[2]|[0]69825456-69825515[2] atgggatcgttgagcagccgggtgctgcgccagccaagaccagcccttgcccagcaggcgcagggtgccagggcggggggctcggcccggaggccggacactggagacgatgcggcgggccacggattctgttactgtgcgggcagccacaagcgcaagcggagcagcgggtccttctgctactgtcaccctgactcggagacggacgaggatgaggaggagggggacgagcagcagcggctcctcaacacccctcgaaggaaaaaattaaagagtacatctaaatatatttatcaaacattatttttgaatggtgaaaacagtgacattaagatttgtgctctaggagaagaatggagcttacacaaaatatatttatgtcaatctggctacttttctagtatgttcagtggttcttggaaagaatccagcatgaatattattgaactggagattcctgaccagaacattgatgtagaagcactgcaggttgcatttggttcactgtatcgagatgatgtcttgataaagcccagtcgagttgttgccattttggcagcagcttgtttgctgcagttggacggtttaatacagcagtgtggtgagacaatgaaggaaacagttaatgtgaaaactgtatgtggctattacacatcagcagggacctatggattagattctgtaaagaaaaagtgccttgaatggcttctaaacaatttgatgactcaccagaatgttgaactttttaaagaactcagtataaatgtcatgaaacagctcattggttcatctaacttatttgtgatgcaagtggagatggatatatacactgctctaaaaaagtggatgttccttcaacttgtgccttcttggaatggatctttaaaacagcttttgacagaaacagatgtctggttttctaaacagaggaaagGCACCGATGAAGACGCCATTATTAGCGTCCTTGCCTACCGCAACACCGCCCAGCGCCAGGAGATCAGGACAGCCTACAAGAGCACCATCGGCAGGGACTTGATAGACGACCTGAAGTCAGAACTGAGTGGCAACTTCGAGCAGGTGATTGTGGGGATGATGACGCCCACGGTGCTGTATGACGTGCAAGAGCTGCGAAGGGCCATGAAGGGAGCCGGCACTGATGAGGGCTGCCTAATTGAGATCCTGGCCTCCCGGACCCCTGAGGAGATCCGGCGCATAAGCCAAACCTACCAGCAGCAATATGGACGGAGCCTTGAAGATGACATTCGCTCTGACACATCGTTCATGTTCCAGCGAGTGCTGGTGTCTCTGTCAGCTGGTGGGAGGGATGAAGGAAATTATCTGGACGATGCTCTCGTGAGACAGGATGCCCAGGACCTGTATGAGGCTGGAGAGAAGAAATGGGGGACAGATGAGGTGAAATTTCTAACTGTTCTCTGTTCCCGGAACCGAAATCACCTGTTGCATGTGTTTGATGAATACAAAAGGATATCACAGAAGGATATTGAACAGAGTATTAAATCTGAAACATCTGGTAGCTTTGAAGATGCTCTGCTGGCTATAGTAAAGTGCATGAGGAACAAATCTGCATATTTTGCTGAAAAGCTCTATAAATCGATGAAGGGCTTGGGCACCGATGATAACACCCTCATCAGAGTGATGGTTTCTCGAGCAGAAATTGACATGTTGGATATCCGGGCACACTTCAAGAGACTCTATGGAAAGTCTCTGTACTCGTTCATCAAGGGTGACACATCTGGAGACTACAGGAAAGTACTGCTTGTTCTCTGTGGAGGAGATGATTAA MGSLSSRVLRQPRPALAQQAQGARAGGSARRPDTGDDAAGHGFCYCAGSHKRKRSSGSFCYCHPDSETDEDEEEGDEQQRLLNTPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSWKESSMNIIELEIPDQNIDVEALQVAFGSLYRDDVLIKPSRVVAILAAACLLQLDGLIQQCGETMKETVNVKTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALKKWMFLQLVPSWNGSLKQLLTETDVWFSKQRKGTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSGNFEQVIVGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRTPEEIRRISQTYQQQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDEGNYLDDALVRQDAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKSAYFAEKLYKSMKGLGTDDNTLIRVMVSRAEIDMLDIRAHFKRLYGKSLYSFIKGDTSGDYRKVLLVLCGGDD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Stomach adenocarcinoma LUNG,STOMACH exact 70057284|70057284,70057284|70057284 FALSE|FALSE,FALSE|FALSE 70008652|70031665,70008652|70031665 FALSE|TRUE,FALSE|TRUE PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30569 ECPAS::SUSD1 ENSG00000136813.15::ENSG00000106868.17 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1152 FALSE NA FALSE NA ECPAS ENSG00000136813.15 protein_coding - - chr9:111360685-111484745:- chr9:111408571:- chr9:114122965-114247025:- chr9:114170851:- SUSD1 ENSG00000106868.17 protein_coding - - chr9:112040783-112175297:- chr9:112041960:- chr9:114803063-114937577:- chr9:114804240:- chr9:111402258,chr9:111402265 chr9:112045115,chr9:112045117 NA NA chr9:114164538,chr9:114164545 chr9:114807395,chr9:114807397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ecm29|188-694|2.8e-149^CEP104-like_TOG|197-239|0.00088^XMAP215_CLASP_TOG|200-241|0.1^HEAT_EZ|201-232|2.4^Vac14_Fab1_bd|201-243|0.091^HEAT|212-237|0.18^HEAT_EZ|302-318|2.9^CLASP_N|543-583|1.1^Adaptin_N|571-671|0.12^HEAT_2|575-654|0.00029^HEAT|612-639|0.072^CEP104-like_TOG|649-674|0.74^Adaptin_N|861-937|0.1^HEAT_EZ|881-929|0.0041^HEAT_2|903-930|0.58^HEAT_EZ|962-992|0.055^HEAT_2|965-995|0.0036^HEAT|974-994|0.13^DUF3385|1016-1038|6^Ecm29|1022-1079|0.12^HEAT_EZ|1105-1136|0.0059^Vac14_Fab1_bd|1107-1171|0.34^XMAP215_CLASP_TOG|1119-1157|0.92^Adaptin_N|1120-1205|3.8e-05^HEAT|1121-1144|0.0003^CEP104-like_TOG|1123-1167|2.4^HEAT_2|1125-1139|0.069^CLASP_N|1127-1166|0.007^DUF3385|1149-1171|7.6^HEAT_EZ|1267-1299|0.00011^Vac14_Fab1_bd|1268-1355|8.4e-05^DUF3385|1278-1303|0.51^HEAT|1295-1315|7.8^Vac14_Fab1_bd|1323-1402|8.6e-08^SapB_2|1325-1345|0.00036^CLASP_N|1331-1405|0.0096^HEAT_2|1333-1401|0.02^HEAT|1335-1363|0.00024^HEAT_EZ|1336-1358|0.053^CEP104-like_TOG|1338-1456|2.4e-07^XMAP215_CLASP_TOG|1342-1454|2.4e-06^HEAT|1390-1407|0.34^Adaptin_N|1400-1489|0.23^DUF3385|1401-1485|0.0079^HEAT_EZ|1422-1450|0.42^HEAT|1426-1456|0.0041^HEAT_2|1438-1458|2.4^HEAT_EZ|1441-1476|0.01^HEAT_EZ|1550-1599|6.5e-05^Vac14_Fab1_bd|1551-1603|1.7^CLASP_N|1557-1603|1.3^Adaptin_N|1572-1676|0.00029^HEAT|1573-1601|0.00051^HEAT_2|1576-1614|0.31^HEAT|1705-1728|1.7^HEAT_2|1706-1729|2.1^DUF3385|1706-1766|0.083^XMAP215_CLASP_TOG|1708-1821|0.084^CLASP_N|1710-1819|0.071^HEAT_EZ|1713-1749|0.018^Vac14_Fab1_bd|1716-1747|2.4^Vac14_Fab1_bd|1768-1843|0.0038^Ecm29|1784-1963|0.0071^DUF3385|1789-1817|6.9^Adaptin_N|1950-2013|0.55^CEP104-like_TOG|1957-1983|6.4 none none 29 22 29 22 ONLY_REF_SPLICE YES_LDAS 0.5306 GT 1.7819 AG 1.9086 ENST00000259335.8 1-3186 ENST00000374263.7 2110-2169 chr9|-|[2]111408571-111408672[0]|[2]111410041-111410213[1]|[0]111410980-111411142[0]|[2]111412014-111412148[0]|[2]111413895-111413986[1]|[0]111414429-111414651[0]|[2]111416272-111416352[0]|[2]111417883-111418006[2]|[1]111420017-111420120[0]|[2]111421921-111422043[0]|[2]111422134-111422200[2]|[1]111423199-111423248[0]|[2]111425418-111425496[2]|[1]111425743-111425828[0]|[2]111428042-111428161[0]|[2]111430547-111430628[2]|[1]111433233-111433372[0]|[2]111436940-111437108[2]|[1]111440372-111440521[2]|[1]111442306-111442424[0]|[2]111444378-111444494[0]|[2]111451425-111451555[1]|[0]111483985-111484261[0]|[2]111484354-111484548[0]|[2]111484662-111484745[0]<==>chr9|-|[2]112041901-112041960[0] atgacctcacggacaaagcgaaggcagaaagttaaaatcagcatatcgaaaataaatcactctagttaccgaaaagaacataggccgttttgggagcaccagccacctccacaccagaactgggctgtcgggggccgctgcggcgcaggggctcgtccgggactgagtcagcgccggggccgagaagttcggcgggaggcgcagggcggggcttcctcccgccgactccgagcccggctctacttttctgagtccacgtctcttcctttggacaggcgtggcagcccgggcccgctcggcccagcccctcacggactgcggcgcgcggctccccggggcccggcccgccgaacgcctcgctctacagccctcacctcgcggcgccgagcgcagcgtccgcggcatggagaccggctccgactcaggtcagaggcccgcccccgggccgcgggggactggccctgcgcgcgcggcggcgcggttaggccgggccgcccgcacaggccgccgcgtgtcgagtccgcgcggggagcgcacgcggggcgggcggcgacagatcagcttgaacgggtctttttacgacttggccatgctgaaacagatgaacaattacagaatattatatctaaattccttcctcctgttttgctcaaactctctagcacccaagaaggagtacgtaaaaaggtaatggaactgctggtccatctgaataaacgtataaaaagccgccccaaaatacaacttccagtagagacactgttggttcagtaccaggaccctgctgcagtttcctttgtcacaaattttactataatttatgttaaaatgggctatcctcgcctaccagtggaaaaacaatgtgaactggcccctacgcttcttactgccatggaagggaagcctcagccacagcaggatagcttaatgcatcttttaataccaaccctttttcacatgaaataccctgttgaatcatcaaaatcagcttctccatttaatcttgctgagaaaccaaagactgtgcagctgcttttggacttcatgctagatgtccttctgatgccttatggttacgtgttaaatgaatcccagagtcgccaaaattcatcttcagcacagggttcttcttcaaacagtggcggaggttctggaatcccacagcctcctccgggaatgagcttttatgcagccaaacgagttattggtgataacccatggacacctgaacaattggaacagtgcaaattgggaatcgtgaaattcatagaagctgaacaggtgcctgaacttgaagctgttctccacttggtgattgcctctagtgatacacgccacagtgtggcaacggcagcagacctggaattgaaaagcaaacagagcttaattgactggaataatcctgccatcattaataagatgtacaaggtgtaccttggagatataccactgaagacaaaagagggtgcagttctgaagccagagttgaaaagggaccctgtcagtacaagagtcaagttaaagattgtcccccatctcctccgctctagacaagctgctgaaacgttcccagccaacattcaggtggtgtatgatggactttttggtacaaatacaaattcaaagttaagaacattatccctgcaatttgtgcatcatatttgtataacctgtccagaaatcaagattaagccattaggtccaatgcttttgaatggcctcaccaagctaatcaatgaatacaaagaggaccctaaactactgtcaatggcatattcagctgttggaaaactctccagtcggatgccacatttattcactaaggatatagcgcttgtgcagcagctttttgaagccctttgcaaggaagagcctgagactcgacttgctattcaagaagctttatctatgatggttggagcgtatagtactttggaaggggcacagcgaactctcatggaggcacttgtggcttcgtacttaataaagcctgaagttcaagttcgacaagtggctgtgaaatttgccagtacggtgtttccctcagatcatatcccttccagatatttgctgctactggctgcaggagatccacgtgaagaagttcatggagaagcacaacgcgtattaaggtgtcttccaggtagaaacagaaaagaaagtacttctgagcagatgccttccttcccagaaatggtttattacatccaagaaaaggcttctcatcgaatgaaaactccagtcaagtacatgaccgggaccactgtccttccatttaacccagcagcctttggagagatcgttctgtacttgcgcatgtgccttgcgcacagtgcgggggtggtgcccacctctcagagtttggctgatatgcaggatcatgccccagccattgggcgctacatacggactttaatgtcaagcgggcagatggcaccctcatcatctaacaagagtggggagactaaccctgtccagatctacattggcctgcttcagcagctgttagcaggtgttggaggtttgccggttatgtactgtctattggaagctgtgtcagtgtatccagaaaagctggctaccaaatttgtagacaaaacagaatggataaagagtctgatgaataacagtaaagaagaaatgcgcgaactggcagcgttgttttattctgtagtggtatcaacagtgtcggggaatgagttgaaatcaatgatagaacagcttataaagactacaaaagacaatcacagcccggagatacagcatggatccttgcttgcattgggattcacggtgggaaggtatttggctaaaaagaaaatgagaatgtcagagcaacaagacctggagagaaatgctgacaccctccctgatcaagaggaactcattcagagtgctacagaaacaataggctcatttttggacagtacatcacccctcctggcaattgctgcctgcacagccctgggtgaaattggcagaaatggtccacttccaatccccagtgagggatctggctttaccaaattgcatcttgtagaaagcttactaagtagaataccttccagtaaagaaacaaataagatgaaagaacgagcaatccaaacactgggatattttccagttggggatggagattttcctcaccagaaactcctcttgcaaggtctgatggattctgtggagATTCGTCACTCATGCTGCTGCAGATGGCGGGTGTTGGACTGGGTTCCCTGGCTGTTGTGA MTSRTKRRQKVKISISKINHSSYRKEHRPFWEHQPPPHQNWAVGGRCGAGARPGLSQRRGREVRREAQGGASSRRLRARLYFSESTSLPLDRRGSPGPLGPAPHGLRRAAPRGPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPRAAGDWPCARGGAVRPGRPHRPPRVESARGAHAGRAATDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIYVKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPVESSKSASPFNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSAQGSSSNSGGGSGIPQPPPGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSVATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVKLKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICITCPEIKIKPLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCKEEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVFPSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNRKESTSEQMPSFPEMVYYIQEKASHRMKTPVKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAPAIGRYIRTLMSSGQMAPSSSNKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSVYPEKLATKFVDKTEWIKSLMNNSKEEMRELAALFYSVVVSTVSGNELKSMIEQLIKTTKDNHSPEIQHGSLLALGFTVGRYLAKKKMRMSEQQDLERNADTLPDQEELIQSATETIGSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLSRIPSSKETNKMKERAIQTLGYFPVGDGDFPHQKLLLQGLMDSVEIRHSCCCRWRVLDWVPWLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30574 HSPG2::WNT4 ENSG00000142798.20::ENSG00000162552.15 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1156 FALSE NA FALSE NA HSPG2 ENSG00000142798.20 protein_coding - - chr1:21822244-21937310:- chr1:21829993:- chr1:22148737-22263803:- chr1:22156486:- WNT4 ENSG00000162552.15 protein_coding - - chr1:22117313-22143969:- chr1:22129851:- chr1:22443806-22470462:- chr1:22456344:- chr1:21829908,chr1:21829914 chr1:22133696,chr1:22133699 NA NA chr1:22156401,chr1:22156407 chr1:22460189,chr1:22460192 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ldl_recept_a|198-234|1.5e-12^Ldl_recept_a|284-319|8.1e-15^hEGF|292-304|0.71^Ldl_recept_a|324-359|5.4e-13^Ldl_recept_a|368-403|3.4e-12^Ig_3|405-483|1.7e-19^I-set|406-486|2.6e-19^C2-set_2|409-447|0.0043^Ig_2|413-486|1e-09^ig|414-486|2.3e-10^V-set_CD47|437-484|0.014^V-set|448-484|1.3e-05^Izumo-Ig|454-481|0.16^Ig_6|462-482|1.4^Receptor_2B4|463-488|0.52^Laminin_B|595-729|3.8e-39^Laminin_EGF|730-752|0.0014^hEGF|730-737|0.39^EGF|731-739|0.034^Laminin_EGF|764-806|2e-11^Laminin_EGF|814-869|2.6e-08^EGF|829-850|0.18^EGF|854-861|3.6^Laminin_EGF|869-921|3.8e-07^Laminin_B|990-1124|6.1e-42^Laminin_EGF|1125-1149|1.4e-05^EGF|1125-1135|0.011^hEGF|1125-1132|0.055^Laminin_EGF|1159-1206|6.9e-12^Laminin_EGF|1209-1263|9.6e-07^EGF|1223-1245|3.6^EGF|1248-1256|6.3^Laminin_EGF|1275-1322|1.6e-11^hEGF|1287-1297|1.6^Laminin_B|1396-1528|1.5e-40^Laminin_EGF|1529-1551|1.4e-05^hEGF|1529-1536|0.023^EGF|1530-1538|0.032^Laminin_EGF|1563-1610|9.5e-11^Laminin_EGF|1613-1668|1.2e-07^Ig_2|1619-1648|0.51^EGF|1627-1649|0.079^hEGF|1627-1645|4.1^Ig_3|1679-1750|3.6e-15^I-set|1680-1763|1.4e-12^Ig_2|1681-1758|5.9e-11^V-set|1685-1752|7.2e-05^ig|1688-1759|4.8e-14^Ig_6|1709-1751|3e-05^Izumo-Ig|1729-1766|0.034^C2-set|1735-1764|4.5^C2-set_2|1774-1808|0.45^Ig_3|1777-1844|4.3e-14^I-set|1777-1857|2.3e-09^V-set|1777-1816|0.05^Ig_2|1778-1844|1.5e-07^ig|1778-1844|1.1e-09^V-set|1822-1857|4.1e-06^Ig_6|1823-1841|0.052^Izumo-Ig|1824-1842|0.19^Ig_3|1866-1936|1.4e-12^I-set|1866-1950|1.3e-13^Ig_2|1870-1945|1.6e-06^C2-set_2|1870-1906|0.0016^ig|1872-1946|5.4e-06^V-set|1872-1906|0.038^Imm45|1908-1931|0.02^Ig_6|1914-1940|3.4^V-set|1918-1950|0.45^Izumo-Ig|1918-1936|9^Ig_3|1956-2028|3.3e-17^I-set|1956-2042|4.5e-17^Ig_2|1958-2032|6e-12^C2-set_2|1960-2004|0.0043^ig|1962-2038|4.5e-14^V-set|2005-2043|0.00085^Ig_6|2008-2032|0.13^Izumo-Ig|2008-2028|1.7^Receptor_2B4|2009-2043|0.75^C2-set|2012-2043|7^Ig_3|2050-2121|2e-16^I-set|2054-2134|8.8e-16^Ig_2|2054-2133|1.5e-13^ig|2056-2131|6.6e-13^V-set|2057-2090|0.00015^C2-set_2|2057-2091|0.00015^Ig_6|2092-2131|0.011^Imm45|2096-2115|2^Izumo-Ig|2100-2121|0.19^C2-set|2100-2135|0.5^V-set|2101-2135|0.0014^Ig_3|2154-2220|1.4e-14^I-set|2154-2235|3.2e-13^Ig_2|2155-2221|6.3e-12^C2-set_2|2156-2194|0.0031^ig|2157-2226|7.4e-10^V-set|2157-2189|0.00014^V-set_CD47|2180-2228|0.45^Imm45|2195-2221|5.8^Ig_6|2198-2220|0.37^Izumo-Ig|2198-2220|0.39^C2-set|2199-2220|1.1^V-set|2203-2223|0.00047^Ig_3|2246-2315|1.3e-16^I-set|2247-2319|1.3e-14^Ig_2|2248-2325|9.3e-13^ig|2250-2315|1.1e-11^V-set|2251-2282|8e-05^C2-set_2|2251-2285|0.00085^Ig_6|2260-2313|0.61^V-set_CD47|2273-2320|0.52^C2-set|2294-2315|2.9^V-set|2296-2316|0.44^Ig_3|2343-2409|4.2e-14^I-set|2343-2423|2.1e-12^Ig_2|2344-2409|2.7e-11^C2-set_2|2345-2381|0.00085^ig|2346-2410|2.7e-09^V-set|2346-2378|0.00033^V-set_CD47|2368-2414|0.21^Ig_6|2388-2409|1.2^C2-set|2389-2410|8.8^V-set|2392-2412|0.039^Ig_3|2437-2505|7.9e-15^I-set|2437-2520|1.1e-15^Ig_2|2440-2518|1.1e-10^C2-set_2|2441-2477|0.0014^ig|2442-2515|4.5e-12^V-set_CD47|2465-2514|0.92^Ig_6|2483-2518|0.036^V-set|2484-2507|0.00058^C2-set|2485-2508|2.7^Izumo-Ig|2486-2506|1.4^Ig_3|2538-2604|2.5e-15^Ig_2|2538-2616|4.2e-11^I-set|2539-2617|4.5e-14^ig|2540-2612|8.5e-11^V-set|2540-2573|0.015^C2-set_2|2545-2574|0.0047^Ig_6|2582-2603|0.81^C2-set|2583-2609|0.76^Izumo-Ig|2584-2605|0.35^V-set|2585-2611|0.0011^Ig_3|2630-2700|5.2e-17^I-set|2632-2713|9.6e-14^Ig_2|2633-2701|1.1e-10^ig|2635-2702|1.2e-11^V-set|2636-2668|0.0014^C2-set_2|2639-2677|0.00037^V-set_CD47|2646-2710|0.045^Ig_6|2676-2702|0.019^Izumo-Ig|2676-2700|3^C2-set|2678-2713|0.073^V-set|2680-2710|0.0017^Ig_3|2729-2795|2.5e-14^Ig_2|2730-2800|2.5e-12^I-set|2731-2810|1.3e-13^ig|2733-2801|4.3e-10^V-set|2733-2765|0.00058^C2-set_2|2740-2774|0.0047^V-set_CD47|2755-2802|0.47^Ig_6|2769-2798|0.051^Izumo-Ig|2773-2795|1.8^V-set|2778-2798|0.0017^Ig_3|2827-2896|1.6e-14^I-set|2828-2910|2.1e-15^Ig_2|2830-2908|2e-13^C2-set_2|2831-2867|0.0026^ig|2832-2899|6e-09^V-set|2832-2895|4.6e-05^V-set_CD47|2855-2905|0.079^Imm45|2868-2892|5.6^Ig_6|2874-2899|4.4^Izumo-Ig|2876-2896|0.15^Receptor_2B4|2884-2902|5.6^Ig_3|2929-2993|2.5e-14^Ig_2|2929-3009|1.3e-14^C2-set_2|2930-2975|0.001^I-set|2931-3009|3.6e-13^V-set|2931-2962|0.00041^ig|2932-3000|4.5e-09^Ig_6|2941-2994|0.075^V-set_CD47|2953-2994|4.7^Izumo-Ig|2971-3009|0.69^V-set|2975-3009|0.0027^C2-set|2984-3010|3.8^Ig_3|3022-3095|2.3e-14^I-set|3022-3108|3.2e-13^Ig_2|3025-3107|9.4e-10^C2-set_2|3026-3078|0.0049^ig|3027-3105|1.6e-09^V-set_CD47|3050-3108|0.72^V-set|3072-3109|0.00026^Izumo-Ig|3074-3097|0.38^Ig_3|3111-3189|8.2e-16^I-set|3121-3202|7.4e-14^ig|3121-3197|5.5e-09^V-set|3121-3202|1.4e-05^C2-set_2|3122-3147|3.2^Ig_2|3124-3202|4.1e-06^Ig_6|3158-3187|0.044^Receptor_2B4|3159-3195|0.2^Izumo-Ig|3169-3193|0.92^C2-set|3169-3202|0.12^Ig_3|3212-3281|2.1e-16^I-set|3212-3295|2.2e-17^Ig_2|3212-3284|2.7e-11^C2-set_2|3212-3247|0.00024^V-set|3218-3250|0.00042^ig|3219-3292|3.2e-13^V-set_CD47|3243-3294|0.96^Ig_6|3257-3295|0.0041^Izumo-Ig|3261-3292|0.12^Receptor_2B4|3262-3287|0.26^V-set|3263-3295|0.097^Ig_3|3298-3369|1.1e-15^I-set|3299-3382|2.3e-17^V-set|3304-3336|0.023^Ig_2|3306-3372|6.8e-13^ig|3307-3379|2.7e-13^C2-set_2|3311-3339|2.4^V-set_CD47|3327-3376|1.2^Ig_6|3345-3369|0.46^Izumo-Ig|3346-3369|0.046^V-set|3350-3382|0.014^Receptor_2B4|3350-3374|0.84^Ig_3|3400-3469|7.3e-10^I-set|3402-3483|1.1e-10^Ig_2|3402-3476|3.9e-07^C2-set_2|3402-3440|0.89^ig|3405-3480|4.1e-09^V-set|3410-3438|0.068^V-set|3445-3471|0.0011^Ig_6|3446-3475|0.12^Ig_2|3492-3571|6.2e-12^Ig_3|3493-3559|1.5e-15^I-set|3494-3572|7.9e-16^C2-set_2|3497-3530|0.0085^ig|3498-3565|2.4e-08^V-set|3498-3525|0.84^Ig_6|3531-3558|1.2^V-set|3536-3572|0.00095^C2-set|3542-3570|4.5^Izumo-Ig|3544-3576|0.019^Ig_3|3576-3645|1.4e-16^Ig_2|3576-3652|3.5e-11^I-set|3580-3658|1.4e-16^ig|3580-3653|5.1e-14^V-set|3581-3613|0.098^C2-set_2|3585-3614|0.011^Ig_6|3617-3648|0.00036^Izumo-Ig|3622-3647|0.0038^Receptor_2B4|3622-3652|0.021^V-set|3623-3658|0.0087^C2-set|3624-3660|0.00047^V-set_CD47|3635-3658|0.4^Laminin_G_1|3692-3829|1.7e-26^Laminin_G_2|3692-3828|3e-22^Laminin_G_3|3723-3826|0.033^Laminin_EGF|3848-3888|2.4^EGF|3848-3879|4.6e-10^hEGF|3853-3875|4.1e-08^Laminin_EGF|3888-3923|0.9^EGF|3888-3920|0.00016^hEGF|3893-3914|0.038^Laminin_G_3|3934-4082|0.0049^Laminin_G_2|3957-4085|1.2e-28^Laminin_G_1|3959-4088|1.1e-32^EGF|4108-4138|2.5e-08^Laminin_EGF|4111-4142|0.027^hEGF|4113-4135|0.00016^EGF|4147-4174|8.1e-06^hEGF|4153-4170|0.00014^Laminin_EGF|4157-4177|0.086^Laminin_G_3|4229-4339|9.2e-09^Laminin_G_1|4234-4362|1e-32^Laminin_G_2|4234-4362|1.7e-30 wnt-PARTIAL|~78-351|4.5e-136 ["HSPG2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.18Mb] 15 14 15 14 ONLY_REF_SPLICE YES_LDAS 0.3018 GT 1.6729 AG 1.9656 ENST00000374695.8 1-11770 ENST00000290167.11 78-1056 chr1|-|[0]21829993-21830091[1]|[0]21830982-21831090[0]|[2]21831215-21831324[1]|[0]21831463-21831562[0]|[2]21831652-21831796[2]|[1]21832495-21832606[1]|[0]21833268-21833384[1]|[0]21833467-21833614[0]|[2]21833816-21833925[1]|[0]21834679-21834945[1]|[0]21835540-21835637[2]|[1]21836802-21837006[1]|[0]21838825-21839085[1]|[0]21839371-21839550[1]|[0]21839822-21840017[0]|[2]21841101-21841285[1]|[0]21841539-21841673[1]|[0]21842002-21842142[1]|[0]21842239-21842380[0]|[2]21842770-21842921[1]|[0]21843297-21843438[0]|[2]21844148-21844299[1]|[0]21846108-21846255[0]|[2]21846448-21846599[1]|[0]21847354-21847492[0]|[2]21847689-21847840[1]|[0]21847958-21848093[0]|[2]21848643-21848794[1]|[0]21848893-21849031[0]|[2]21850041-21850192[1]|[0]21850363-21850498[0]|[2]21851546-21851697[1]|[0]21851791-21851926[0]|[2]21852088-21852233[1]|[0]21852700-21852832[0]|[2]21852919-21853070[1]|[0]21854193-21854343[0]|[2]21854611-21854765[1]|[0]21854848-21854983[0]|[2]21855304-21855446[1]|[0]21855523-21855675[1]|[0]21855787-21855912[1]|[0]21857015-21857195[0]|[2]21857285-21857385[1]|[0]21859566-21859676[1]|[0]21859835-21860002[1]|[0]21860177-21860235[2]|[1]21861757-21861843[2]|[1]21861988-21862115[0]|[2]21864100-21864213[0]|[2]21864843-21865073[0]|[2]21865285-21865365[0]|[2]21865717-21865809[0]|[2]21872186-21872377[0]|[2]21872620-21872760[0]|[2]21872997-21873091[1]|[0]21873375-21873424[2]|[1]21873925-21874011[2]|[1]21874406-21874533[0]|[2]21874616-21874729[0]|[2]21874891-21875002[2]|[1]21875629-21875747[0]|[2]21875863-21876042[0]|[2]21876229-21876405[0]|[2]21876512-21876652[0]|[2]21878186-21878253[1]|[0]21878433-21878491[2]|[1]21878577-21878663[2]|[1]21878994-21879121[0]|[2]21880107-21880254[2]|[1]21880363-21880559[0]|[2]21880656-21880835[0]|[2]21881339-21881502[1]|[0]21884528-21884674[1]|[0]21884767-21884918[2]|[1]21885013-21885157[1]|[0]21885320-21885451[1]|[0]21887215-21887334[1]|[0]21887420-21887674[1]|[0]21887938-21888066[1]|[0]21889981-21890141[2]|[1]21890427-21890485[0]|[2]21890585-21890694[1]|[0]21895922-21895966[1]|[0]21896175-21896310[0]|[2]21937155-21937217[0]<==>chr1|-|[2]22120050-22120517[0]|[2]22121211-22121353[1]|[0]22121445-22121576[1]|[0]22129616-22129851[2] 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gtgcctgccagagacaaaccaagccccactggtggtcgaggtccatcctgctcgaagcatagtgccccaaggtggctcccactccctgcggtgtcaggtcagtgggagcccaccccactacttctattggtcccgtgaggatgggcggcctgtgcccagcggcacccagcagcgacatcaaggctccgagctccacttccccagcgtccagccctcggatgctggggtctacatttgcacctgccgtaatctccaccaatccaataccagccgggcagagctgctggtcactgaggctccaagcaagcccatcacagtgactgtggaggagcagcggagccagagcgtgcgccccggagctgacgtcaccttcatctgcacagccaaaagcaagtccccagcctataccctggtgtggacccgcctgcacaacgggaaactgcccacccgagccatggatttcaatggcatcctgaccattcgcaacgtccagctgagtgatgcaggcacctacgtgtgcaccggctccaacatgtttgccatggaccagggcacagccactctacatgtgcaggcctcgggcaccttgtccgcccccgtggtctccatccatccgccacagctcacagtgcagcccgggcaactggcggagttccgctgcagcgccacagggagccccacgcccaccctcgagtggacagggggccccggcggccagctccctgcgaaggcacaaatccacggcggcatcctgcgcctgccagctgtcgagcccacggatcaggcccagtacttgtgccgagcccacagcagcgctgggcagcaggtggccagggctgtgctccacgtgcatgggggcggtgggcccagagtccaagtgagcccagagaggacccaggtccacgcaggccgcaccgtcaggctgtactgcagggctgcaggcgtgcctagcgccaccatcacctggaggaaggaagggggcagcctcccaccacaggcccggtcagagcgcacagacatcgcgacactgctcatcccagccatcacgactgctgacgccggcttctacctctgcgtggccaccagccctgcaggcactgcccaggcccggatccaagtggttgtcctttcagcctcagatgccagcccaccgccggtcaagattgagtcctcatcgccttctgtgacagaagggcaaacactcgacctcaactgtgtggtggcagggtcagcccatgcccaggtcacctggtacaggcgagggggtagcctgcctccccacacccaggtgcacggctcccgtctgcggctcccccaggtctcaccagctgattctggagaatatgtgtgccgtgtggagaatggatcgggccccaaggaggcctccattactgtgtctgtgctccacggcacccattctggccccagctacaccccagtgcccggcagcacccggcccatccgcatcgagccctcctcctcacacgtggcggaagggcagaccctggatctgaactgcgtggtgcccgggcaggcccacgcccaggtcacgtggcacaagcgtgggggcagcctccctgcccggcaccagacccacggctcgctgctgcggctgcaccaggtgaccccggccgactcaggcgagtatgtgtgccatgtggtgggcacctccggccccctagaggcctcagtcctggtcaccatcgaagcctctgtcatccctggacccatcccacctgtcaggatcgagtcttcatcctccacagtggccgagggccagaccctggatctgagctgcgtggtggcagggcaggcccacgcccaggtcacatggtacaagcgtgggggcagcctccctgcccggcaccaggttcgtggctcccgcctgtacatcttccaggcctcacctgccgatgcgggacagtacgtctgccgggccagcaacggcatggaggcctccatcacggtcacagtaactgggacccagggggccaacttagcctaccctgccggcagcacccagcccatccgcatcgagccctcctcctcgcaagtggcggaagggcagaccctggatctgaactgcgtggtgcccgggcagtcccatgcccaggtcacgtggcacaagcgtgggggcagcctccctgtccggcaccagacccacggctccctgctgagactctaccaagcgtcccccgccgactcgggcgagtacgtgtgccgagtgttgggcagctccgtgcctctagaggcctctgtcctggtcaccattgagcctgcgggctcagtgcctgcacttggggtcacccccacggtccggatcgagtcatcgtcttcgcaagtggccgaggggcagaccctggacctgaactgcctcgttgctggtcaggcccatgcccaggtcacgtggcacaagcgcgggggcagcctcccggcccggcaccaggtgcatggctcgaggctacgcctgctccaggtgaccccagctgattcaggggagtacgtgtgccgtgtggtcggcagctcaggtacccaggaagcctcagtccttgtcaccatccagcagcgccttagtggctcccactcccagggtgtggcgtaccccgtccgcatcgagtcctcctcagcctccctggccaatggacacaccctggacctcaactgcctggttgccagccaggctccccacaccatcacctggtataagcgtggaggcagcttacccagccggcaccagatcgtgggctcccggctgcggatccctcaggtgactccggcagactcgggcgagtacgtgtgtcacgtcagtaacggtgcaggctcccgggagacctcgctcatcgtcaccatccagggcagcggttcctcccacgtgcccagcgtctccccaccgatcaggatcgagtcgtcttcccccacggtggtggaagggcagaccttggatctgaactgcgtggtcgccaggcagccccaggctatcatcacatggtacaagcgtgggggcagccttccctcccgacaccagacccatggctcccacctgcggttgcaccaaatgtctgtggctgactcgggcgagtatgtgtgccgggccaacaacaacatcgatgccctggaggcctccatcgtcatctccgtctcccctagcgccggcagcccctccgcccctggcagctccatgcccatcagaattgagtcatcctcctcacacgtggccgaaggggagaccctggatctgaactgcgtggtccccgggcaggcccatgcccaggtcacttggcacaagcgtgggggcagcctccccagtcaccatcagacccgcggctcacggctgcggctgcaccatgtgtccccggccgactcgggtgaatacgtgtgccgggtgatgggcagctctggccccctggaggcctcagtcctggtcaccatcgaagcctctggctcaagtgctgtccacgtccccgccccaggtggagccccacccatccgcatcgagccctcctcctcccgagtggcagaagggcagaccctggatctgaagtgcgtggtgcccgggcaggcccacgcccaggtcacgtggcacaagcgtggaggaaacctccctgcccggcaccaggtccacggcccactgctgaggctgaaccaggtgtccccggctgactctggcgagtactcgtgccaagtgaccggaagctcaggcaccctggaggcatctgtcctggtcacaattgagccctccagcccaggacccattcctgctccaggactggcccagcccatctacatcgaggcctcctcttcacacgtgactgaagggcagactctggatctgaactgtgtggtgcccgggcaggcccatgcccaggtcacgtggtacaagcgcgggggcagcctccccgcccggcaccagacccatggctcccagctgcggctccacctcgtctcccctgccgactcaggcgagtatgtgtgtcgtgcagccagcggcccaggccctgagcaagaagcctccttcacagtcaccgtcccgcccagtgaggggtcttcctaccgccttaggagcccggtcatctccatcgacccgcccagcagcaccgtgcagcagggccaggatgccagcttcaagtgcctcatccatgacggggcagcccccatcagcctcgagtggaagacccggaaccaggagctggaggacaacgtccacatcagtcccaatggctccatcatcaccatcgtgggcacccggcccagcaaccacggtacctaccgctgcgtggcctccaatgcctacggtgtggcccagagtgtggtgaacctcagtgtgcacgggccccctacagtgtccgtgctccccgagggccccgtgtgggtgaaagtgggaaaggctgtcaccctggagtgtgtcagtgccggggagccccgctcctctgctcgttggacccggatcagcagcacccctgccaagttggagcagcggacatatgggctcatggacagccacgcggtgctgcagatttcatcagctaaaccatcagatgcgggcacttatgtgtgccttgctcagaatgcactaggcacagcacagaagcaggtggaggtgatcgtggacacgggcgccatggccccaggggcccctcaggtccaagctgaagaagctgagctgactgtggaggctggacacacggccaccttgcgctgctcagccacaggcagccccgcgcccaccatccactggtccaagctgcgttccccactgccctggcagcaccggctggaaggtgacacactcatcataccccgggtagcccagcaggactcgggccagtacatctgcaatgccactagccctgctgggcacgctgaggccaccatcatcctgcacgtggagagcccaccatatgccaccacggtcccagagcacgcttcggtgcaggcaggggagacggtgcagctccagtgcctggctcacgggacacccccactcaccttccagtggagccgcgtgggcagcagccttcctgggagggcgaccgccaggaacgagctgctgcactttgagcgtgcagcccctgaggactcaggccgctaccgctgccgggtcaccaacaaggtgggctcagccgaggcctttgcccagctgctcgtccaaggccctcccggctctctccctgccacctccatcccagcagggtccacgcccaccgtgcaggtcacgcctcagctagagaccaagagcattggggccagcgttgagttccactgtgctgtgcccagcgaccggggtacccagctccgttggttcaaggaagggggtcagctgcctccgggtcacagcgtgcaggatggggtgctccgaatccagaacttggaccagagctgccaagggacgtatatatgccaggcccatggaccttgggggaaggcccaggccagtgcccagctggttatccaagccctgccctcggtgctcatcaacatccggacctctgtgcagaccgtggtggttggccacgccgtggagttcgaatgcctggcactgggtgaccccaagcctcaggtgacatggagcaaagttggagggcacctgcggccaggcattgtgcagagcggaggtgtcgtcaggatcgcccacgtagagctggctgatgcgggacagtatcgctgcactgccaccaacgcagctggcaccacacaatcccacgtcctgctgcttgtgcaagccttgccccagatctcaatgccccaagaagtccgtgtgcctgctggttctgcagctgtcttcccctgcatagcctcaggctaccccactcctgacatcagctggagcaagctggatggcagcctgccacctgacagccgcctggagaacaacatgctgatgctgccctcagtccgaccccaggacgcaggtacctacgtctgcaccgccactaaccgccagggcaaggtcaaagcctttgcccacctgcaggtgccagagcgggtggtgccctacttcacgcagaccccctactccttcctaccgctgcccaccatcaaggatgcctacaggaagttcgagatcaagatcaccttccggcccgactcagccgatgggatgctgctgtacaatgggcagaagcgagtcccagggagccccaccaacctggccaaccggcagcccgacttcatctccttcggcctcgtggggggaaggcccgagttccggttcgatgcaggctcaggcatggccaccatccgccatcccacaccactggccctgggccatttccacaccgtgaccctgctgcgcagcctcacccagggctccctgattgtgggtgacctggccccggtcaatgggacctcccagggcaagttccagggcctggatctgaacgaggaactctacctgggtggctatcctgactatggtgccatccccaaggcggggctgagcagcggcttcataggctgtgtccgggagctgcgcatccagggcgaggagatcgtcttccatgacctcaacctcacggcgcacggcatctcccactgccccacctgtcgggaccggccctgccagaatggcggtcagtgccatgactctgagagcagcagctacgtgtgcgtctgcccagctggcttcaccgggagccgctgtgagcactcgcaggccctgcactgccatccagaggcctgtgggcccgacgccacctgtgtgaaccggcctgacggtcgaggctacacctgccgctgccacctgggccgctcggggttgcggtgtgaggaagGTACCTGGCCAAGCTGTCGTCGGTGGGGAGCATCTCAGAGGAGGAGACGTGCGAGAAACTCAAGGGCCTGATCCAGAGGCAGGTGCAGATGTGCAAGCGGAACCTGGAAGTCATGGACTCGGTGCGCCGCGGTGCCCAGCTGGCCATTGAGGAGTGCCAGTACCAGTTCCGGAACCGGCGCTGGAACTGCTCCACACTCGACTCCTTGCCCGTCTTCGGCAAGGTGGTGACGCAAGGGACTCGGGAGGCGGCCTTCGTGTACGCCATCTCTTCGGCAGGTGTGGCCTTTGCAGTGACGCGGGCGTGCAGCAGTGGGGAGCTGGAGAAGTGCGGCTGTGACAGGACAGTGCATGGGGTCAGCCCACAGGGCTTCCAGTGGTCAGGATGCTCTGACAACATCGCCTACGGTGTGGCCTTCTCACAGTCGTTTGTGGATGTGCGGGAGAGAAGCAAGGGGGCCTCGTCCAGCAGAGCCCTCATGAACCTCCACAACAATGAGGCCGGCAGGAAGGCCATCCTGACACACATGCGGGTGGAATGCAAGTGCCACGGGGTGTCAGGCTCCTGTGAGGTAAAGACGTGCTGGCGAGCCGTGCCGCCCTTCCGCCAGGTGGGTCACGCACTGAAGGAGAAGTTTGATGGTGCCACTGAGGTGGAGCCACGCCGCGTGGGCTCCTCCAGGGCACTGGTGCCACGCAACGCACAGTTCAAGCCGCACACAGATGAGGACCTGGTGTACTTGGAGCCTAGCCCCGACTTCTGTGAGCAGGACATGCGCAGCGGCGTGCTGGGCACGAGGGGCCGCACATGCAACAAGACGTCCAAGGCCATCGACGGCTGTGAGCTGCTGTGCTGTGGCCGCGGCTTCCACACGGCGCAGGTGGAGCTGGCTGAACGCTGCAGCTGCAAATTCCACTGGTGCTGCTTCGTCAAGTGCCGGCAGTGCCAGCGGCTCGTGGAGTTGCACACGTGCCGATGA MGWRAAGALLLALLLHGRLLAVTHGLRAYDGLSLPEDIETVTASQMRWTHSYLSDDEDMLADSISGDDLGSGDLGSGDFQMVYFRALVNFTRSIEYSPQLEDAGSREFREVSEAVVDTLESEYLKIPGDQVVSVVFIKELDGWVFVELDVGSEGNADGAQIQEMLLRVISSGSVASYVTSPQGFQFRRLGTVPQFPRACTEAEFACHSYNECVALEYRCDRRPDCRDMSDELNCEEPVLGISPTFSLLVETTSLPPRPETTIMRQPPVTHAPQPLLPGSVRPLPCGPQEAACRNGHCIPRDYLCDGQEDCEDGSDELDCGPPPPCEPNEFPCGNGHCALKLWRCDGDFDCEDRTDEANCPTKRPEEVCGPTQFRCVSTNMCIPASFHCDEESDCPDRSDEFGCMPPQVVTPPRESIQASRGQTVTFTCVAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTLIIRDVKESDQGAYTCEAMNARGMVFGIPDGVLELVPQRGPCPDGHFYLEHSAACLPCFCFGITSVCQSTRRFRDQIRLRFDQPDDFKGVNVTMPAQPGTPPLSSTQLQIDPSLHEFQLVDLSRRFLVHDSFWALPEQFLGNKVDSYGGSLRYNVRYELARGMLEPVQRPDVVLMGAGYRLLSRGHTPTQPGALNQRQVQFSEEHWVHESGRPVQRAELLQVLQSLEAVLIQTVYNTKMASVGLSDIAMDTTVTHATSHGRAHSVEECRCPIGYSGLSCESCDAHFTRVPGGPYLGTCSGCNCNGHASSCDPVYGHCLNCQHNTEGPQCNKCKAGFFGDAMKATATSCRPCPCPYIDASRRFSDTCFLDTDGQATCDACAPGYTGRRCESCAPGYEGNPIQPGGKCRPVNQEIVRCDERGSMGTSGEACRCKNNVVGRLCNECADGSFHLSTRNPDGCLKCFCMGVSRHCTSSSWSRAQLHGASEEPGHFSLTNAASTHTTNEGIFSPTPGELGFSSFHRLLSGPYFWSLPSRFLGDKVTSYGGELRFTVTQRSQPGSTPLHGQPLVVLQGNNIILEHHVAQEPSPGQPSTFIVPFREQAWQRPDGQPATREHLLMALAGIDTLLIRASYAQQPAESRVSGISMDVAVPEETGQDPALEVEQCSCPPGYRGPSCQDCDTGYTRTPSGLYLGTCERCSCHGHSEACEPETGACQGCQHHTEGPRCEQCQPGYYGDAQRGTPQDCQLCPCYGDPAAGQAAHTCFLDTDGHPTCDACSPGHSGRHCERCAPGYYGNPSQGQPCQRDSQVPGPIGCNCDPQGSVSSQCDAAGQCQCKAQVEGLTCSHCRPHHFHLSASNPDGCLPCFCMGITQQCASSAYTRHLISTHFAPGDFQGFALVNPQRNSRLTGEFTVEPVPEGAQLSFGNFAQLGHESFYWQLPETYQGDKVAAYGGKLRYTLSYTAGPQGSPLSDPDVQITGNNIMLVASQPALQGPERRSYEIMFREEFWRRPDGQPATREHLLMALADLDELLIRATFSSVPLAASISAVSLEVAQPGPSNRPRALEVEECRCPPGYIGLSCQDCAPGYTRTGSGLYLGHCELCECNGHSDLCHPETGACSQCQHNAAGEFCELCAPGYYGDATAGTPEDCQPCACPLTNPENMFSRTCESLGAGGYRCTACEPGYTGQYCEQCGPGYVGNPSVQGGQCLPETNQAPLVVEVHPARSIVPQGGSHSLRCQVSGSPPHYFYWSREDGRPVPSGTQQRHQGSELHFPSVQPSDAGVYICTCRNLHQSNTSRAELLVTEAPSKPITVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPTRAMDFNGILTIRNVQLSDAGTYVCTGSNMFAMDQGTATLHVQASGTLSAPVVSIHPPQLTVQPGQLAEFRCSATGSPTPTLEWTGGPGGQLPAKAQIHGGILRLPAVEPTDQAQYLCRAHSSAGQQVARAVLHVHGGGGPRVQVSPERTQVHAGRTVRLYCRAAGVPSATITWRKEGGSLPPQARSERTDIATLLIPAITTADAGFYLCVATSPAGTAQARIQVVVLSASDASPPPVKIESSSPSVTEGQTLDLNCVVAGSAHAQVTWYRRGGSLPPHTQVHGSRLRLPQVSPADSGEYVCRVENGSGPKEASITVSVLHGTHSGPSYTPVPGSTRPIRIEPSSSHVAEGQTLDLNCVVPGQAHAQVTWHKRGGSLPARHQTHGSLLRLHQVTPADSGEYVCHVVGTSGPLEASVLVTIEASVIPGPIPPVRIESSSSTVAEGQTLDLSCVVAGQAHAQVTWYKRGGSLPARHQVRGSRLYIFQASPADAGQYVCRASNGMEASITVTVTGTQGANLAYPAGSTQPIRIEPSSSQVAEGQTLDLNCVVPGQSHAQVTWHKRGGSLPVRHQTHGSLLRLYQASPADSGEYVCRVLGSSVPLEASVLVTIEPAGSVPALGVTPTVRIESSSSQVAEGQTLDLNCLVAGQAHAQVTWHKRGGSLPARHQVHGSRLRLLQVTPADSGEYVCRVVGSSGTQEASVLVTIQQRLSGSHSQGVAYPVRIESSSASLANGHTLDLNCLVASQAPHTITWYKRGGSLPSRHQIVGSRLRIPQVTPADSGEYVCHVSNGAGSRETSLIVTIQGSGSSHVPSVSPPIRIESSSPTVVEGQTLDLNCVVARQPQAIITWYKRGGSLPSRHQTHGSHLRLHQMSVADSGEYVCRANNNIDALEASIVISVSPSAGSPSAPGSSMPIRIESSSSHVAEGETLDLNCVVPGQAHAQVTWHKRGGSLPSHHQTRGSRLRLHHVSPADSGEYVCRVMGSSGPLEASVLVTIEASGSSAVHVPAPGGAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVSPADSGEYSCQVTGSSGTLEASVLVTIEPSSPGPIPAPGLAQPIYIEASSSHVTEGQTLDLNCVVPGQAHAQVTWYKRGGSLPARHQTHGSQLRLHLVSPADSGEYVCRAASGPGPEQEASFTVTVPPSEGSSYRLRSPVISIDPPSSTVQQGQDASFKCLIHDGAAPISLEWKTRNQELEDNVHISPNGSIITIVGTRPSNHGTYRCVASNAYGVAQSVVNLSVHGPPTVSVLPEGPVWVKVGKAVTLECVSAGEPRSSARWTRISSTPAKLEQRTYGLMDSHAVLQISSAKPSDAGTYVCLAQNALGTAQKQVEVIVDTGAMAPGAPQVQAEEAELTVEAGHTATLRCSATGSPAPTIHWSKLRSPLPWQHRLEGDTLIIPRVAQQDSGQYICNATSPAGHAEATIILHVESPPYATTVPEHASVQAGETVQLQCLAHGTPPLTFQWSRVGSSLPGRATARNELLHFERAAPEDSGRYRCRVTNKVGSAEAFAQLLVQGPPGSLPATSIPAGSTPTVQVTPQLETKSIGASVEFHCAVPSDRGTQLRWFKEGGQLPPGHSVQDGVLRIQNLDQSCQGTYICQAHGPWGKAQASAQLVIQALPSVLINIRTSVQTVVVGHAVEFECLALGDPKPQVTWSKVGGHLRPGIVQSGGVVRIAHVELADAGQYRCTATNAAGTTQSHVLLLVQALPQISMPQEVRVPAGSAAVFPCIASGYPTPDISWSKLDGSLPPDSRLENNMLMLPSVRPQDAGTYVCTATNRQGKVKAFAHLQVPERVVPYFTQTPYSFLPLPTIKDAYRKFEIKITFRPDSADGMLLYNGQKRVPGSPTNLANRQPDFISFGLVGGRPEFRFDAGSGMATIRHPTPLALGHFHTVTLLRSLTQGSLIVGDLAPVNGTSQGKFQGLDLNEELYLGGYPDYGAIPKAGLSSGFIGCVRELRIQGEEIVFHDLNLTAHGISHCPTCRDRPCQNGGQCHDSESSSYVCVCPAGFTGSRCEHSQALHCHPEACGPDATCVNRPDGRGYTCRCHLGRSGLRCEEGTWPSCRRWGASQRRRRARNSRA*SRGRCRCASGTWKSWTRCAAVPSWPLRSASTSSGTGAGTAPHSTPCPSSARW*RKGLGRRPSCTPSLRQVWPLQ*RGRAAVGSWRSAAVTGQCMGSAHRASSGQDALTTSPTVWPSHSRLWMCGREARGPRPAEPS*TSTTMRPAGRPS*HTCGWNASATGCQAPVR*RRAGEPCRPSARWVTH*RRSLMVPLRWSHAAWAPPGHWCHATHSSSRTQMRTWCTWSLAPTSVSRTCAAACWARGAAHATRRPRPSTAVSCCAVAAASTRRRWSWLNAAAANSTGAASSSAGSASGSWSCTRAD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30577 TMEM94::ARMC7 ENSG00000177728.17::ENSG00000125449.7 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1154 FALSE NA FALSE NA TMEM94 ENSG00000177728.17 protein_coding + + chr17:75441159-75500452:+ chr17:75496471:+ chr17:73437240-73496533:+ chr17:73492552:+ ARMC7 ENSG00000125449.7 protein_coding + + chr17:75109952-75130272:+ chr17:75114169:+ chr17:73106047-73126367:+ chr17:73110264:+ chr17:75496613,chr17:75496614,chr17:75496613 chr17:75111463,chr17:75111156,chr17:75111460 NA NA chr17:73492694,chr17:73492695,chr17:73492694 chr17:73107558,chr17:73107251,chr17:73107555 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame E1-E2_ATPase|178-204|4.5e-05^E1-E2_ATPase|291-348|0.58^Cation_ATPase_C|1127-1339|7.3e-10 none ["CCLE_StarF2019"] 10 34 10 33.44 ONLY_REF_SPLICE YES_LDAS 0.4519 GT 1.9899 AG 1.9899 ENST00000375248.9 1-3273 ENST00000582136.5 236-249 chr17|+|[0]75476690-75476743[2]|[0]75485428-75485547[2]|[0]75485871-75485998[1]|[2]75486290-75486426[0]|[1]75487932-75488134[2]|[0]75488759-75488910[1]|[2]75489266-75489368[2]|[0]75489576-75489662[2]|[0]75490234-75490350[2]|[0]75490702-75490758[2]|[0]75491049-75491153[2]|[0]75491303-75491455[2]|[0]75491691-75491900[2]|[0]75492474-75492789[0]|[1]75492929-75493102[0]|[1]75493491-75493593[1]|[2]75493699-75493916[0]|[1]75494627-75494808[2]|[0]75494896-75495034[0]|[1]75495284-75495399[2]|[0]75495544-75495643[0]|[1]75495966-75496074[1]|[2]75496282-75496471[2]<==>chr17|+|[1]75114169-75114182[2] atgctctttaagcaggcagagctatggatgccccatcagggcaaaggcaacaaaggcgagcctccctcagccctgggcctgtccacgcggaaggccctcagcgtcctgaaggagcagctggaggcagtgctggaaggacatctcagggagcggaagaagtgtctgacgtggaaggaggtgtggagaagcagcttcctccaccacagtaaccgctgctcctgcttccactggccgggggcctcactcatgctactggccgtgctgctgctgctgggctgctgcgggggacagccagccgggagccgtggggtggggctggtgaatgcctcggccttgttcctgttactgcttctcaaccttgtgctcatcgggcggcaagaccggctgaagcgtcgggaggtagagcggaggctgcgagggatcattgaccaaatccaagatgccctcagggatggcagggagatccagtggcccagtgccatgtatccagacctccacatgccttttgcgccatcctggtccttgcactgggcctacagagacggacacctggtcaacctgccagtcagcctgctggttgaaggagacatcatagctttgaggcctggccaggaatcgtttgcttctctgagggggatcaaggatgacgagcacatcgtcctggagccgggagacctcttcccccccttctcccctccaccctcaccccggggagaagtggagagagggccacagagcccccagcagcaccggcttttccgtgtccttgagacccctgtgattgacaacatcagatggtgcctggacatggccctgtcccgaccagtcactgccctggacaatgagcggttcacagtgcagtcggtgatgctacactatgctgtgcccgtggtcctggccggcttcctcatcaccaatgccctgcgcttcatcttcagtgccccgggggtcacttcctggcagtacaccctcctccagctccaggtgaatggcgtcctgcccatcctccccctgctctttccagtcctctgggttctggcaactgcctgtggagaggcccgtgtcctggcccagatgagcaaggcctcacccagctccctgctggctaagttctcagaggatactctcagcagctatacggaggctgtctcctctcaggaaatgctgcgctgcatttggggccacttcctgagggtgctcggggggacatcgccaacgctgagccacagttccagcctgctgcacagcctgggctctgtcacggtcctgtgctgtgtggacaaacaggggatcctgtcatggccaaatcccagcccagagactgtactgttcttcagcgggaaggtggagccccctcacagcagccatgaggacctcaccgatggcctatccacccgctccttctgccatcccgagccccatgaacgagacgccctcctggctggctccctgaacaacaccctgcacctttccaatgagcaggagcgtggcgactggcctggcgaggctcccaagccccccgagccctattcacaccacaaagcgcatggccgcagcaaacacccatctggctccaacgtgagcttcagcagggacaccgagggtggtgaagaagagcccagcaagacccagcctgggatggagagcgacccctacgaagcagaggactttgtgtgtgactaccacctggagatgctgagcctgtcccaggaccagcagaacccctcctgcatccagtttgatgactccaactggcagctgcacctcacctccctcaaacccctgggcctcaatgtgctgctgaacctgtgtgatgccagcgtcaccgagcgcctgtgccgattctccgaccacctgtgcaacatcgccctgcaagagagccacagcgccgtgctgcccgtccatgtgccctggggcctctgcgagcttgcccgcctcattggcttcactcctggggccaaggagcttttcaagcaggagaaccatctggcgctgtaccgcctccccagtgccgagacaatgaaggagacatcgctggggcggctctcctgtgtcaccaagcggcggcctcccctcagccacatgatcagcctcttcattaaagacaccaccaccagcacagagcagatgctgtcccatggcaccgctgatgtggtcttagaggcctgcacagacttctgggacggagctgacatctaccctctctcgggatctgacagaaagaaagtgctggacttctaccagcgagcctgcctgtctgggtattgctctgccttcgcctacaagcccatgaactgcgccctgtcctctcagctcaatggcaagtgcatcgagctggtacaggtgcccggccaaagcagcatcttcaccatgtgcgagctgcccagcaccatccccatcaagcagaacgcccgccgcagcagctggagctctgacgaagggatcggggaggtgctggagaaggaagactgcatgcaggccctgagcggccagatcttcatgggcatggtgtcctcccagtaccaggcccggctggacatcgtgcgcctcattgatgggcttgtcaacgcctgcatccgctttgtctacttctctttggaggatgagctcaaaagcaaggtgtttgcagaaaaaatgggcctggagacaggctggaactgccacatctccctcacacccaatggtgacatgcctggctccgagatccccccctccagccccagccacgcaggctccctgcatgatgacctgaatcaggtgtcccgagatgatgcagaagggctcctcctcatggaggaggagggccactcggacctcatcagcttccagcctacggacagcgacatccccagcttcctggaggactccaaccgggccaagctgccccggggtatccaccaagtgcggccccacctgcagaacattgacaacgtgcccctgctagtgccccttttcaccgactgcaccccagagaccatgtgtgagatgataaagatcatgcaagagtacggggaggtgacctgctgcctgggcagctctgccaacctgcggaacagctgcctcttcctccagagcgacatcagcattgccctggatcccctgtacccatcccgttgctcctgggagacctttggctacgccaccagcatcagcatggcccaggcctcggatggcctttctcccctgcagctgtcagggcagctcaacagcctgccctgttccctgacctttcgccaggaggagaccatcagcatcatccggcttatcgaacagCTGCTGCAGTCTGA MLFKQAELWMPHQGKGNKGEPPSALGLSTRKALSVLKEQLEAVLEGHLRERKKCLTWKEVWRSSFLHHSNRCSCFHWPGASLMLLAVLLLLGCCGGQPAGSRGVGLVNASALFLLLLLNLVLIGRQDRLKRREVERRLRGIIDQIQDALRDGREIQWPSAMYPDLHMPFAPSWSLHWAYRDGHLVNLPVSLLVEGDIIALRPGQESFASLRGIKDDEHIVLEPGDLFPPFSPPPSPRGEVERGPQSPQQHRLFRVLETPVIDNIRWCLDMALSRPVTALDNERFTVQSVMLHYAVPVVLAGFLITNALRFIFSAPGVTSWQYTLLQLQVNGVLPILPLLFPVLWVLATACGEARVLAQMSKASPSSLLAKFSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSVTVLCCVDKQGILSWPNPSPETVLFFSGKVEPPHSSHEDLTDGLSTRSFCHPEPHERDALLAGSLNNTLHLSNEQERGDWPGEAPKPPEPYSHHKAHGRSKHPSGSNVSFSRDTEGGEEEPSKTQPGMESDPYEAEDFVCDYHLEMLSLSQDQQNPSCIQFDDSNWQLHLTSLKPLGLNVLLNLCDASVTERLCRFSDHLCNIALQESHSAVLPVHVPWGLCELARLIGFTPGAKELFKQENHLALYRLPSAETMKETSLGRLSCVTKRRPPLSHMISLFIKDTTTSTEQMLSHGTADVVLEACTDFWDGADIYPLSGSDRKKVLDFYQRACLSGYCSAFAYKPMNCALSSQLNGKCIELVQVPGQSSIFTMCELPSTIPIKQNARRSSWSSDEGIGEVLEKEDCMQALSGQIFMGMVSSQYQARLDIVRLIDGLVNACIRFVYFSLEDELKSKVFAEKMGLETGWNCHISLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLLMEEEGHSDLISFQPTDSDIPSFLEDSNRAKLPRGIHQVRPHLQNIDNVPLLVPLFTDCTPETMCEMIKIMQEYGEVTCCLGSSANLRNSCLFLQSDISIALDPLYPSRCSWETFGYATSISMAQASDGLSPLQLSGQLNSLPCSLTFRQEETISIIRLIEQLLQS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30581 CA5A::BANP ENSG00000174990.8::ENSG00000172530.22 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CA5A ENSG00000174990.8 protein_coding - - chr16:87881546-87936580:- chr16:87936309:- chr16:87915152-87970186:- chr16:87969915:- BANP ENSG00000172530.22 protein_coding + + chr16:87949244-88077318:+ chr16:87975048:+ chr16:87982850-88110924:+ chr16:88008654:+ chr16:87929914 chr16:87953359 NA NA chr16:87963520 chr16:87986965 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_INVERSION:-:+:[12715] 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1144 GT 1.7819 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30583 HEXD::OGFOD3 ENSG00000169660.17::ENSG00000181396.13 FU97 SRR8615735 SRR8639236 STOMACH carcinoma (diffuse_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1157 FALSE NA FALSE NA HEXD ENSG00000169660.17 protein_coding + + chr17:82418318-82442645:+ chr17:82419883:+ chr17:80376194-80400521:+ chr17:80377759:+ OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82409410:- chr17:80347086-80376513:- chr17:80367286:- chr17:82423568,chr17:82423831,chr17:82423566 chr17:82411210,chr17:82411049,chr17:82411212 NA NA chr17:80381444,chr17:80381707,chr17:80381442 chr17:80369086,chr17:80368925,chr17:80369088 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Glyco_hydro_20-PARTIAL|63-84~|3.6e-12 none none 2 21 2 16.67 ONLY_REF_SPLICE YES_LDAS 0.1942 GT 1.9656 AG 1.8323 ENST00000644009.1 1-84 ENST00000580445.5 373-381 chr17|+|[0]82419800-82419883[2]<==>chr17|-|[2]82409402-82409410[0] atgtcaggttccactccatttcagatgagattagttcatttagaccttaaaggagctccaccaaaggtctcgtacctctcagagCGTAGCTGA MSGSTPFQMRLVHLDLKGAPPKVSYLSERS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30584 MATR3::UBE2D2 ENSG00000015479.20::ENSG00000131508.17 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MATR3 ENSG00000015479.20 protein_coding + + chr5:139293674-139331677:+ chr5:139293805:+ chr5:138629363-138667366:+ chr5:138629494:+ UBE2D2 ENSG00000131508.17 protein_coding + + chr5:139526431-139628434:+ chr5:139600372:+ chr5:138906016-139008019:+ chr5:138979957:+ chr5:139303622,chr5:139303622,chr5:139303622 chr5:139590030,chr5:139590008,chr5:139589989 NA NA chr5:138639311,chr5:138639311,chr5:138639311 chr5:138969615,chr5:138969593,chr5:138969574 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["UBE2D2:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.20Mb] 332 37 332 37 ONLY_REF_SPLICE YES_LDAS 4.8612 GT 1.6895 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30585 TPM1::TLN2 ENSG00000140416.25::ENSG00000171914.17 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1158 TRUE 2060 TRUE 796 TPM1 ENSG00000140416.25 protein_coding + + chr15:63042620-63071915:+ chr15:63062645:+ chr15:63334819-63364114:+ chr15:63354844:+ TLN2 ENSG00000171914.17 protein_coding + + chr15:62390526-62844631:+ chr15:62805600:+ chr15:62682725-63136830:+ chr15:63097799:+ chr15:63065932,chr15:63065930 chr15:62801713,chr15:62801708 NA NA chr15:63358131,chr15:63358129 chr15:63093912,chr15:63093907 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tropomyosin|1-82|4.6e-11^CENP-F_leu_zip|2-119|2.5^DUF3450|3-50|0.49^ATG16|5-69|0.18^Crescentin|6-149|0.028^TMF_DNA_bd|8-36|9.9^CALCOCO1|9-130|0.0015^DUF4200|11-103|6e-06^XhlA|11-44|0.27^CLZ|13-43|0.0004^ADIP|16-56|3.1^DUF5930|17-178|0.00064^Laminin_I|18-84|0.013^Fib_alpha|20-68|0.32^DUF745|21-80|0.2^Laminin_II|23-101|0.19^ERM_helical|23-89|0.25^Fez1|35-153|1.2^TMF_DNA_bd|36-74|5.8^ADIP|37-111|0.053^Tropomyosin|47-124|3e-07^DUF1664|54-119|0.004^CLZ|57-114|0.00063^DUF745|59-145|2.5e-05^XhlA|63-93|0.047^ATG16|67-148|6.2e-05^Laminin_II|73-145|0.00017^DUF3450|75-155|0.14^TMF_DNA_bd|79-124|0.1^NPV_P10|80-114|0.037^Fib_alpha|81-173|0.051^ERM_helical|84-194|0.0082^Fez1|85-215|0.17^DUF745|87-203|0.00013^Tropomyosin|88-326|2.4e-80^XhlA|88-131|0.00026^Laminin_I|90-125|0.00017^DUF16|94-160|6.4^DUF4200|107-192|3.9^Crescentin|108-164|0.011^Laminin_II|110-184|0.0027^ADIP|110-184|0.051^TMF_DNA_bd|117-151|5.7e-05^CLZ|118-159|0.0066^Crescentin|123-313|4.3e-05^DUF745|124-226|0.00046^NPV_P10|125-157|0.082^DUF1664|129-184|0.014^XhlA|129-158|0.19^Fib_alpha|129-184|0.16^CALCOCO1|130-318|0.019^Laminin_I|132-207|0.0065^DUF3450|145-216|4.1^ATG16|149-255|0.57^XhlA|152-192|0.3^TMF_DNA_bd|153-194|1.9^Fez1|161-259|0.012^DUF16|163-224|0.25^DUF1664|177-237|0.043^CENP-F_leu_zip|179-324|2e-05^CLZ|189-191|2.7^Laminin_II|193-239|0.015^ERM_helical|198-258|0.00018^ADIP|205-258|0.0031^XhlA|207-252|0.0004^NPV_P10|212-256|0.045^CLZ|213-259|0.0017^Laminin_I|215-322|0.0017^TMF_DNA_bd|216-241|1.1^DUF745|231-325|0.005^Laminin_II|232-311|1.2e-07^ATG16|233-318|0.0078^XhlA|234-276|0.00049^Fez1|234-315|0.00017^DUF5930|234-318|0.32^DUF1664|235-301|0.00016^Fib_alpha|235-311|0.00011^DUF3450|236-321|1.1e-05^DUF16|236-276|0.0027^ERM_helical|244-318|0.00056^ADIP|246-318|5.7e-05^DUF4200|248-317|0.0015^TMF_DNA_bd|251-305|4.3e-06^XhlA|262-301|0.0049^CLZ|272-324|2.1e-05^DUF16|273-317|0.00099^XhlA|285-316|0.0047^NPV_P10|287-307|0.13 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.20Mb] 155 114 155 107.06 ONLY_REF_SPLICE YES_LDAS 3.4524 GT 1.8256 AG 1.9656 ENST00000357980.9 1-898 ENST00000494733.5 3220-4416 chr15|+|[0]63042830-63042943[2]|[0]63043706-63043831[2]|[0]63044027-63044152[2]|[0]63056985-63057118[1]|[2]63059563-63059680[2]|[0]63060869-63060939[1]|[2]63061713-63061788[2]|[0]63062215-63062277[2]|[0]63062576-63062645[0]<==>chr15|+|[0]62805600-62805785[2]|[0]62809925-62810032[2]|[0]62819516-62819621[0]|[1]62820486-62820610[2]|[0]62833504-62833629[2]|[0]62835737-62835799[2]|[0]62835891-62836118[2]|[0]62838856-62838981[2]|[0]62840482-62840610[2] atggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttggatcgagctgagcaggcggaggccgacaagaaggcggcggaagacaggagcaagcagctcgaggaggacatcgcggccaaggagaagttgctgcgggtgtcggaggacgagcgggaccgggtgctggaggagctgcacaaggcggaggacagcctcctggccgccgaagaggccgccgccaagctggaagatgagctggtgtcactgcaaaagaaactcaagggcaccgaagatgaactggacaaatactctgaggctctcaaagatgcccaggagaagctggagctggcagagaaaaaggccaccgatgctgaagccgacgtagcttctctgaacagacgcatccagctggttgaggaagagttggatcgtgcccaggagcgtctggcaacagctttgcagaagctggaggaagctgagaaggcagcagatgagagtgagagaggcatgaaagtcattgagagtcgagcccaaaaagatgaagaaaaaatggaaattcaggagatccaactgaaagaggccaagcacattgctgaagatgccgaccgcaaatatgaagaggtggcccgtaagctggtcatcattgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgtgccgagcttgaagaagaattgaaaactgtgacgaacaacttgaagtcactggaggctcaggctgagaagtactcgcagaaggaagacagatatgaggaagagatcaaggtcctttccgacaagctgaaggaggctgagactcgggctgagtttgcggagaggtcagtaactaaattggagaaaagcattgatgacttagaagGTGTTCCAGTCAAAAGACGTACCTGAAAAGACATCATCACCTGAAGAATCCATAAGGATGACGAAAGGCATCACCATGGCAACAGCCAAAGCCGTGGCAGCTGGGAACTCATGTAGACAGGAGGACGTGATTGCTACTGCCAACCTGAGCCGGAAAGCCGTGTCAGATATGTTGACGGCTTGCAAGCAAGCATCCTTCCACCCCGATGTCAGTGACGAGGTGAGAACCAGAGCCTTGCGTTTCGGGACGGAGTGCACCCTTGGCTACTTGGACCTCCTGGAGCACGTCTTGGTGATTCTTCAGAAACCAACCCCAGAATTCAAGCAGCAGCTGGCCGCTTTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCAGGCGGCGGAAGCCATGAAAGGAACAGAGTGGGTGGATCCAGAAGACCCAACTGTCATTGCAGAAACAGAGTTACTGGGGGCTGCAGCATCCATCGAAGCTGCTGCTAAGAAGTTAGAGCAACTGAAGCCAAGAGCAAAACCAAAACAAGCGGATGAGACCCTGGACTTTGAGGAACAGATCTTGGAAGCTGCTAAATCCATTGCTGCTGCCACAAGCGCCCTGGTCAAATCGGCCTCAGCAGCCCAGAGGGAGCTGGTGGCCCAAGGAAAGGTGGGCTCCATCCCTGCCAATGCTGCAGACGACGGACAGTGGTCACAGGGGCTGATTTCTGCTGCCCGGATGGTGGCGGCTGCGACCAGCAGTCTCTGTGAGGCGGCCAATGCCTCCGTTCAGGGACACGCCAGCGAGGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCACGGCTCAGCTGCTGGTGGCCTGCAAGGTGAAGGCCGACCAGGATTCAGAGGCCATGAGGCGGCTACAGGTAATGGTCACTGATGCTGGTGGGAAAATACTCCTGTTGGAGCGGGCGGCAGGAAATGCTGTGAAAAGAGCCTCAGACAATCTTGTCCGTGCAGCCCAGAAGGCAGCTTTTGGCAAAGCTGATGACGACGATGTTGTAGTGAAAACCAAGTTTGTGGGGGGCATTGCTCAGATCATCGCCGCCCAGGAAGAAATGCTAAAGAAAGAGCGAGAACTGGAAGAAGCAAGGAAAAAACTGGCCCAAATCCGCCAGCAGCAGTATAAGTTTTTACCCACCGAGCTGAGGGAAGATGAGGGCTAA MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRVLEELHKAEDSLLAAEEAAAKLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEGVPVKRRT*KDIIT*RIHKDDERHHHGNSQSRGSWELM*TGGRDCYCQPEPESRVRYVDGLQASILPPRCQ*RGENQSLAFRDGVHPWLLGPPGARLGDSSETNPRIQAAAGRFLQASRRRCDRAHPGGGSHERNRVGGSRRPNCHCRNRVTGGCSIHRSCC*EVRATEAKSKTKTSG*DPGL*GTDLGSC*IHCCCHKRPGQIGLSSPEGAGGPRKGGLHPCQCCRRRTVVTGADFCCPDGGGCDQQSL*GGQCLRSGTRQRGEAHLICQAGRRFHGSAAGGLQGEGRPGFRGHEAATGNGH*CWWENTPVGAGGRKCCEKSLRQSCPCSPEGSFWQS**RRCCSENQVCGGHCSDHRRPGRNAKERARTGRSKEKTGPNPPAAV*VFTHRAEGR*GL FALSE FALSE NA NA TRUE hsa-mir-190a chr15:62823957-62824041:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30587 GGA3::MUC20 ENSG00000125447.18::ENSG00000176945.18 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1163 FALSE NA FALSE NA GGA3 ENSG00000125447.18 protein_coding - - chr17:75236599-75262363:- chr17:75241400:- chr17:73232694-73258444:- chr17:73237481:- MUC20 ENSG00000176945.18 protein_coding + + chr3:195720884-195741123:+ chr3:195724680:+ chr3:195447755-195467994:+ chr3:195451551:+ chr17:75241255,chr17:75241264 chr3:195722695,chr3:195722686 NA NA chr17:73237336,chr17:73237345 chr3:195449566,chr3:195449557 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VHS|5-142|3.1e-52^Helo_like_N|36-85|0.24^Maestro_HEAT|53-85|0.03^DNA_ligase_A_N|112-265|8.3e-05^GGA_N-GAT|169-207|3.8e-24^GAT|173-203|0.11^DUF2935|173-237|0.1^RapA_C|174-226|0.00013^VHS|176-203|0.37^Maestro_HEAT|181-215|0.0028^Helo_like_N|186-224|0.015^GAT|222-299|3.6e-23^RapA_C|245-291|0.68^DUF2935|248-312|0.00066^Helo_like_N|261-328|0.014^Alpha_adaptinC2|598-715|2.9e-31 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr3] 57 45 56.94 44.96 ONLY_REF_SPLICE YES_LDAS 1.3424 GT 1.9656 AG 1.371 ENST00000537686.6 1-946 ENST00000436408.6 77-2172 chr17|-|[0]75241400-75241516[1]|[0]75241615-75241696[0]|[2]75242336-75242473[0]|[2]75242831-75242911[0]|[2]75243063-75243166[1]|[0]75243447-75243570[0]|[2]75244619-75244717[0]|[2]75246509-75246584[2]|[1]75246712-75246796[1]|[0]75261548-75261587[0]<==>chr3|+|[1]195724680-195726572[0]|[1]195729648-195729739[2]|[0]195734756-195734866[2] atggcggaggcggaaggggaaagcctggagtcctggctcaataaagccaccaatccttccaaccgccaggaggactgggaatacataattggcttctgtgatcagatcaacaaggagctggaagggccacagatcgccgtccgactgctggcccacaagatccagtccccacaggaatgggaggcgctccaggccctgacggtgctggaggcatgcatgaagaactgtgggaggagatttcataacgaagtggggaagttccgctttttgaatgagttaatcaaagtcgtctctccaaagtacctgggggacagggtgtctgagaaagtgaagaccaaggttattgagctgctgtacagctggaccatggccctgccagaagaagcaaagatcaaagacgcctaccacatgctgaagagacagggcatagtgcagtctgacccaccaattcctgtggataggacgctgatcccctctccaccacctcgtcccaaaaaccctgtttttgatgatgaggagaagtccaagcttttagccaagctgctgaaaagcaaaaacccagatgacctgcaggaggccaacaagctcatcaagtccatggtgaaggaagacgaggcacggatccagaaggtgaccaagcgtctgcacacgttagaggaagttaacaacaacgtgagactgctcagtgagatgctgcttcattacagccaggaggactcttcggacggggacagagagctgatgaaggagctgtttgatcagtgtgagaacaagaggcggactttatttaaactcgccagtgagactgaggacaatgataacagtttgggggacatcctgcaagccagtgacaacctctcccgggtcatcaactcttacaaaacaattattgaagggcaggtcatcaatggcgaggtggctaccttaaccctgcctgactcggaagGCCCCAGCACCCGCAGAGCAGACACTGCGATGACAACGGACGACACAGAAGTGCCCGCTATGACTCTAGCACCGGGCCACGCCGCTCTGGAAACTCAAACGCTGAGCGCTGAGACCTCTTCTAGGGCCTCAACCCCAGCCGGCCCCATTCCAGAAGCAGAGACCAGGGGAGCCAAGAGAATTTCCCCTGCAAGAGAGACCAGGAGTTTCACAAAAACATCTCCCAACTTCATGGTGCTGATCGCCACCTCCGTGGAGACATCAGCCGCCAGTGGCAGCCCCGAGGGAGCTGGAATGACCACAGTTCAGACCATCACAGGCAGTGATCCCAGGGAAGCCATCTTTGACACCCTTTGCACCGATGACAGCTCTGAAGAGGCAAAGACACTCACAATGGACATATTGACATTGGCTCACACCTCCACAGAAGCTAAGGGCCTGTCCTCAGAGAGCAGCGCCTCTTCCGACAGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCTCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCCTCATGGTCCCCGGGATCTGACGTCACTCTCCTCGCTGAAGCCCTGGTGACTGTCACAAACATCGAGGTTATTAATTGCAGCATCACAGAAATAGAAACAACGACTTCCAGCATCCCTGGGGCCTCAGACACAGATCTCATCCCCACGGAAGGGGTGAAGGCCTCGTCCACCTCCGATCCACCAGCTCTGCCTGACTCCACTGAAGCAAAACCACACATCACTGAGGTCACAGCCTCTGCCGAGACCCTGTCCACAGCCGGCACCACAGAGTCAGCTGCACCTGATGCCACGGTTGGGACCCCACTCCCCACTAACAGCGCCACAGAAAGAGAAGTGACAGCACCCGGGGCCACGACCCTCAGTGGAGCTCTGGTCACAGTTAGCAGGAATCCCCTTGAAGAAACCTCAGCCCTCTCTGTTGAGACACCAAGTTACGTCAAAGTCTCAGGAGCAGCTCCGGTCTCCATAGAGGCTGGGTCAGCAGTGGGCAAAACAACTTCCTTTGCTGGGAGCTCTGCTTCCTCCTACAGCCCCTCGGAAGCCGCCCTCAAGAACTTCACCCCTTCAGAGACACCGACCATGGACATCGCAACCAAGGGGCCCTTCCCCACCAGCAGGGACCCTCTTCCTTCTGTCCCTCCGACTACAACCAACAGCAGCCGAGGGACGAACAGCACCTTAGCCAAGATCACAACCTCAGCGAAGACCACGATGAAGCCCCCAACAGCCACGCCCACGACTGCCCGGACGAGGCCGACCACAGACGTGAGTGCAGGTGAAAATGGAGGTTTCCTCCTCCTGCGGCTGAGTGTGGCTTCCCCGGAAGACCTCACTGACCCCAGAGTGGCAGAAAGGCTGATGCAGCAGATGGAAAGGAGCCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAAGCTCCACCTCTTGGGTTCACGTGATTCTCCTGCCTCAGCCTCCTGA MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFDDEEKSKLLAKLLKSKNPDDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPDSEGPSTRRADTAMTTDDTEVPAMTLAPGHAALETQTLSAETSSRASTPAGPIPEAETRGAKRISPARETRSFTKTSPNFMVLIATSVETSAASGSPEGAGMTTVQTITGSDPREAIFDTLCTDDSSEEAKTLTMDILTLAHTSTEAKGLSSESSASSDSPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSRASESSASSDGLHPVITPSRASESSASSDGPHPVITPSRASESSASSDGPHPVITPSWSPGSDVTLLAEALVTVTNIEVINCSITEIETTTSSIPGASDTDLIPTEGVKASSTSDPPALPDSTEAKPHITEVTASAETLSTAGTTESAAPDATVGTPLPTNSATEREVTAPGATTLSGALVTVSRNPLEETSALSVETPSYVKVSGAAPVSIEAGSAVGKTTSFAGSSASSYSPSEAALKNFTPSETPTMDIATKGPFPTSRDPLPSVPPTTTNSSRGTNSTLAKITTSAKTTMKPPTATPTTARTRPTTDVSAGENGGFLLLRLSVASPEDLTDPRVAERLMQQMERSLALSPRLECSGVISAHCKLHLLGSRDSPASAS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30591 TPM1::TLN2 ENSG00000140416.25::ENSG00000171914.17 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1159 TRUE 2060 TRUE 796 TPM1 ENSG00000140416.25 protein_coding + + chr15:63042620-63071915:+ chr15:63062277:+ chr15:63334819-63364114:+ chr15:63354476:+ TLN2 ENSG00000171914.17 protein_coding + + chr15:62390526-62844631:+ chr15:62805600:+ chr15:62682725-63136830:+ chr15:63097799:+ chr15:63065932,chr15:63065930 chr15:62801713,chr15:62801708 NA NA chr15:63358131,chr15:63358129 chr15:63093912,chr15:63093907 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Tropomyosin|1-82|4.6e-11^CENP-F_leu_zip|2-119|2.5^DUF3450|3-50|0.49^ATG16|5-69|0.18^Crescentin|6-149|0.028^TMF_DNA_bd|8-36|9.9^CALCOCO1|9-130|0.0015^DUF4200|11-103|6e-06^XhlA|11-44|0.27^CLZ|13-43|0.0004^ADIP|16-56|3.1^DUF5930|17-178|0.00064^Laminin_I|18-84|0.013^Fib_alpha|20-68|0.32^DUF745|21-80|0.2^Laminin_II|23-101|0.19^ERM_helical|23-89|0.25^Fez1|35-153|1.2^TMF_DNA_bd|36-74|5.8^ADIP|37-111|0.053^Tropomyosin|47-124|3e-07^DUF1664|54-119|0.004^CLZ|57-114|0.00063^DUF745|59-145|2.5e-05^XhlA|63-93|0.047^ATG16|67-148|6.2e-05^Laminin_II|73-145|0.00017^DUF3450|75-155|0.14^TMF_DNA_bd|79-124|0.1^NPV_P10|80-114|0.037^Fib_alpha|81-173|0.051^ERM_helical|84-194|0.0082^Fez1|85-215|0.17^DUF745|87-203|0.00013^Tropomyosin|88-326|2.4e-80^XhlA|88-131|0.00026^Laminin_I|90-125|0.00017^DUF16|94-160|6.4^DUF4200|107-192|3.9^Crescentin|108-164|0.011^Laminin_II|110-184|0.0027^ADIP|110-184|0.051^TMF_DNA_bd|117-151|5.7e-05^CLZ|118-159|0.0066^Crescentin|123-313|4.3e-05^DUF745|124-226|0.00046^NPV_P10|125-157|0.082^DUF1664|129-184|0.014^XhlA|129-158|0.19^Fib_alpha|129-184|0.16^CALCOCO1|130-318|0.019^Laminin_I|132-207|0.0065^DUF3450|145-216|4.1^ATG16|149-255|0.57^XhlA|152-192|0.3^TMF_DNA_bd|153-194|1.9^Fez1|161-259|0.012^DUF16|163-224|0.25^DUF1664|177-237|0.043^CENP-F_leu_zip|179-324|2e-05^CLZ|189-191|2.7^Laminin_II|193-239|0.015^ERM_helical|198-258|0.00018^ADIP|205-258|0.0031^XhlA|207-252|0.0004^NPV_P10|212-256|0.045^CLZ|213-259|0.0017^Laminin_I|215-322|0.0017^TMF_DNA_bd|216-241|1.1^DUF745|231-325|0.005^Laminin_II|232-311|1.2e-07^ATG16|233-318|0.0078^XhlA|234-276|0.00049^Fez1|234-315|0.00017^DUF5930|234-318|0.32^DUF1664|235-301|0.00016^Fib_alpha|235-311|0.00011^DUF3450|236-321|1.1e-05^DUF16|236-276|0.0027^ERM_helical|244-318|0.00056^ADIP|246-318|5.7e-05^DUF4200|248-317|0.0015^TMF_DNA_bd|251-305|4.3e-06^XhlA|262-301|0.0049^CLZ|272-324|2.1e-05^DUF16|273-317|0.00099^XhlA|285-316|0.0047^NPV_P10|287-307|0.13 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.20Mb] 21 72 21 6.94 ONLY_REF_SPLICE YES_LDAS 0.3681 GT 1.7056 AG 1.9656 ENST00000357980.9 1-828 ENST00000494733.5 3220-4416 chr15|+|[0]63042830-63042943[2]|[0]63043706-63043831[2]|[0]63044027-63044152[2]|[0]63056985-63057118[1]|[2]63059563-63059680[2]|[0]63060869-63060939[1]|[2]63061713-63061788[2]|[0]63062215-63062277[2]<==>chr15|+|[0]62805600-62805785[2]|[0]62809925-62810032[2]|[0]62819516-62819621[0]|[1]62820486-62820610[2]|[0]62833504-62833629[2]|[0]62835737-62835799[2]|[0]62835891-62836118[2]|[0]62838856-62838981[2]|[0]62840482-62840610[2] atggacgccatcaagaagaagatgcagatgctgaagctcgacaaggagaacgccttggatcgagctgagcaggcggaggccgacaagaaggcggcggaagacaggagcaagcagctcgaggaggacatcgcggccaaggagaagttgctgcgggtgtcggaggacgagcgggaccgggtgctggaggagctgcacaaggcggaggacagcctcctggccgccgaagaggccgccgccaagctggaagatgagctggtgtcactgcaaaagaaactcaagggcaccgaagatgaactggacaaatactctgaggctctcaaagatgcccaggagaagctggagctggcagagaaaaaggccaccgatgctgaagccgacgtagcttctctgaacagacgcatccagctggttgaggaagagttggatcgtgcccaggagcgtctggcaacagctttgcagaagctggaggaagctgagaaggcagcagatgagagtgagagaggcatgaaagtcattgagagtcgagcccaaaaagatgaagaaaaaatggaaattcaggagatccaactgaaagaggccaagcacattgctgaagatgccgaccgcaaatatgaagaggtggcccgtaagctggtcatcattgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgtgccgagcttgaagaagaattgaaaactgtgacgaacaacttgaagtcactggaggctcaggctgagaagtactcgcagaaggaagacagatatgaggaagagatcaaggtcctttccgacaagctgaaggagGTGTTCCAGTCAAAAGACGTACCTGAAAAGACATCATCACCTGAAGAATCCATAAGGATGACGAAAGGCATCACCATGGCAACAGCCAAAGCCGTGGCAGCTGGGAACTCATGTAGACAGGAGGACGTGATTGCTACTGCCAACCTGAGCCGGAAAGCCGTGTCAGATATGTTGACGGCTTGCAAGCAAGCATCCTTCCACCCCGATGTCAGTGACGAGGTGAGAACCAGAGCCTTGCGTTTCGGGACGGAGTGCACCCTTGGCTACTTGGACCTCCTGGAGCACGTCTTGGTGATTCTTCAGAAACCAACCCCAGAATTCAAGCAGCAGCTGGCCGCTTTCTCCAAGCGAGTCGCCGGCGCTGTGACAGAGCTCATCCAGGCGGCGGAAGCCATGAAAGGAACAGAGTGGGTGGATCCAGAAGACCCAACTGTCATTGCAGAAACAGAGTTACTGGGGGCTGCAGCATCCATCGAAGCTGCTGCTAAGAAGTTAGAGCAACTGAAGCCAAGAGCAAAACCAAAACAAGCGGATGAGACCCTGGACTTTGAGGAACAGATCTTGGAAGCTGCTAAATCCATTGCTGCTGCCACAAGCGCCCTGGTCAAATCGGCCTCAGCAGCCCAGAGGGAGCTGGTGGCCCAAGGAAAGGTGGGCTCCATCCCTGCCAATGCTGCAGACGACGGACAGTGGTCACAGGGGCTGATTTCTGCTGCCCGGATGGTGGCGGCTGCGACCAGCAGTCTCTGTGAGGCGGCCAATGCCTCCGTTCAGGGACACGCCAGCGAGGAGAAGCTCATCTCATCTGCCAAGCAGGTCGCCGCTTCCACGGCTCAGCTGCTGGTGGCCTGCAAGGTGAAGGCCGACCAGGATTCAGAGGCCATGAGGCGGCTACAGGTAATGGTCACTGATGCTGGTGGGAAAATACTCCTGTTGGAGCGGGCGGCAGGAAATGCTGTGAAAAGAGCCTCAGACAATCTTGTCCGTGCAGCCCAGAAGGCAGCTTTTGGCAAAGCTGATGACGACGATGTTGTAGTGAAAACCAAGTTTGTGGGGGGCATTGCTCAGATCATCGCCGCCCAGGAAGAAATGCTAAAGAAAGAGCGAGAACTGGAAGAAGCAAGGAAAAAACTGGCCCAAATCCGCCAGCAGCAGTATAAGTTTTTACCCACCGAGCTGAGGGAAGATGAGGGCTAA MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRVLEELHKAEDSLLAAEEAAAKLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEVFQSKDVPEKTSSPEESIRMTKGITMATAKAVAAGNSCRQEDVIATANLSRKAVSDMLTACKQASFHPDVSDEVRTRALRFGTECTLGYLDLLEHVLVILQKPTPEFKQQLAAFSKRVAGAVTELIQAAEAMKGTEWVDPEDPTVIAETELLGAAASIEAAAKKLEQLKPRAKPKQADETLDFEEQILEAAKSIAAATSALVKSASAAQRELVAQGKVGSIPANAADDGQWSQGLISAARMVAAATSSLCEAANASVQGHASEEKLISSAKQVAASTAQLLVACKVKADQDSEAMRRLQVMVTDAGGKILLLERAAGNAVKRASDNLVRAAQKAAFGKADDDDVVVKTKFVGGIAQIIAAQEEMLKKERELEEARKKLAQIRQQQYKFLPTELREDEG* FALSE FALSE NA NA TRUE hsa-mir-190a chr15:62823957-62824041:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30593 HMGCR::RIMS2 ENSG00000113161.17::ENSG00000176406.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1165 FALSE NA FALSE NA HMGCR ENSG00000113161.17 protein_coding + + chr5:75336329-75364001:+ chr5:75350949:+ chr5:74632154-74659826:+ chr5:74646774:+ RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103697086:+ chr8:104512838-105266658:+ chr8:104709314:+ chr5:75351354 chr8:103672778 NA NA chr5:74647179 chr8:104685006 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Patched|62-276|1.6e-12^Sterol-sensing|87-222|3.3e-20^HMG-CoA_red|492-871|7.3e-147 PDZ|593-674|2.5e-09^PDZ_6|619-676|9.9e-10^C2|743-852|2.1e-25^FYVE_2|1134-1178|3.9^C2|1451-1558|4.8e-21 ["HMGCR:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr5--chr8] 14 11 14 11 ONLY_REF_SPLICE YES_LDAS 0.3293 GT 1.6729 AG 1.7968 ENST00000680940.1 1-941 ENST00000666250.1 177-4779 chr5|+|[0]75342606-75342770[2]|[0]75343853-75343964[0]|[1]75344245-75344332[1]|[2]75345574-75345658[2]|[0]75347204-75347309[0]|[1]75350042-75350148[2]|[0]75350258-75350374[2]|[0]75350789-75350949[1]<==>chr8|+|[2]103697086-103697296[2]|[0]103766227-103766537[1]|[2]103885298-103886223[0]|[1]103910134-103910201[2]|[0]103912053-103912172[2]|[0]103915495-103915594[0]|[1]103916414-103916537[1]|[2]103918441-103918487[0]|[1]103921672-103921784[2]|[0]103931263-103931393[1]|[2]103936551-103936722[2]|[0]103942773-103942926[0]|[1]103961065-103961133[0]|[1]103975350-103975506[1]|[2]103989305-103989421[1]|[2]103998185-103998250[1]|[2]104013442-104013621[1]|[2]104014506-104014615[0]|[1]104015424-104015456[0]|[1]104031680-104031769[0]|[1]104033660-104033698[0]|[1]104041326-104041358[0]|[1]104068512-104068612[2]|[0]104093471-104093643[1]|[2]104148607-104148848[0]|[1]104244916-104245057[1]|[2]104248701-104248813[0]|[1]104249487-104249588[0]|[1]104251024-104251163[2]|[0]104251602-104251820[2] atgttgtcaagactttttcgaatgcatggcctctttgtggcctcccatccctgggaagtcatagtggggacagtgacactgaccatctgcatgatgtccatgaacatgtttactggtaacaataagatctgtggttggaattatgaatgtccaaagtttgaagaggatgttttgagcagtgacattataattctgacaataacacgatgcatagccatcctgtatatttacttccagttccagaatttacgtcaacttggatcaaaatatattttgggtattgctggccttttcacaattttctcaagttttgtattcagtacagttgtcattcacttcttagacaaagaattgacaggcttgaatgaagctttgccctttttcctacttttgattgacctttccagagcaagcacattagcaaagtttgccctcagttccaactcacaggatgaagtaagggaaaatattgctcgtggaatggcaattttaggtcctacgtttaccctcgatgctcttgttgaatgtcttgtgattggagttggtaccatgtcaggggtacgtcagcttgaaattatgtgctgctttggctgcatgtcagttcttgccaactacttcgtgttcatgactttcttcccagcttgtgtgtccttggtattagagctttctcgggaaagccgcgagggtcgtccaatttggcagctcagccattttgcccgagttttagaagaagaagaaaataagccgaatcctgtaactcagagggtcaagatgattatgtctctaggcttggttcttgttcatgctcacagtcgctggatagctgatccttctcctcaaaacagtacagcagatacttctaaggtttcattaggactggatgaaaatgtgtccaagagaattgaaccaagtgtttccctctggcagttttatctctctaaAAAACTGCATCAGCAGTTTGAAATGTATAAAGAGCAGGTAAAGAAGATGGGAGAAGAATCACAGCAACAGCAAGAACAGAAGGGTGATGCGCCAACCTGTGGTATCTGCCACAAAACAAAGTTTGCTGATGGATGTGGCCATAACTGTTCATATTGCCAAACAAAGTTCTGTGCTCGTTGTGGAGGTCGAGTGTCATTACGCTCAAACAAGGTTATGTGGGTATGTAATTTGTGCCGAAAACAACAAGAAATCCTCACTAAATCAGGAGCATGGTTTTATAATAGTGGATCTAATACACCACAGCAACCTGATCAAAAGGTTCTTCGAGGGCTAAGAAATGAGGAGGCACCTCAGGAGAAGAAACCAAAACTACATGAGCAGACCCAGTTCCAAGGACCCTCAGGTGACTTATCTGTACCTGCAGTGGAGAAAAGTCGATCTCATGGGCTCACAAGACAGCATTCTATTAAAAATGGGTCAGGCGTGAAGCATCACATTGCCAGTGACATAGCTTCAGACAGGAAAAGAAGCCCATCTGTGTCCAGAGATCAGAATAGAAGATACGACCAAAGGGAAGAAAGAGAGGAATATTCACAGTATGCTACTTCGGATACCGCAATGCCTAGATCTCCATCAGATTATGCTGATAGGCGATCTCAACATGAACCTCAGTTTTATGAAGACTCTGATCATTTAAGTTATAGGGACTCCAACAGGAGAAGTCATAGGCATTCCAAAGAATATATTGTAGATGATGAGGATGTGGAAAGCAGAGATGAATACGAAAGGCAAAGGAGAGAGGAAGAGTACCAGTCACGCTACCGAAGTGATCCGAATTTGGCCCGTTATCCAGTAAAGCCACAACCCTATGAAGAACAAATGCGGATCCATGCTGAAGTGTCCCGAGCACGGCATGAGAGAAGGCATAGTGATGTTTCTTTGGCAAATGCTGATCTGGAAGATTCCAGGATTTCTATGCTAAGGATGGATCGACCATCAAGGCAAAGATCTATATCAGAACGTAGAGCTGCCATGGAAAATCAGCGATCTTATTCAATGGAAAGAACTCGAGAGGCTCAGGGACCAAGTTCTTATGCACAAAGGACCACAAACCATAGTCCTCCTACCCCCAGGAGGAGTCCACTACCCATAGATAGACCAGACTTGAGGCGTACTGACTCACTACGGAAACAGCACCACTTAGATCCTAGCTCTGCTGTAAGAAAAACAAAACGGGAAAAAATGGAAACAATGTTAAGGAATGATTCTCTCAGTTCAGACCAGTCAGAGTCAGTGAGACCTCCACCACCAAAGCCTCATAAATCAAAGAAAGGCGGTAAAATGCGCCAGATTTCGTTGAGCAGTTCAGAGGAGGAATTGGCTTCCACGCCTGAATATACAAGTTGTGATGATGTTGAGATTGAAAGTGAGAGTGTAAGTGAAAAAGGAGACATGGATTACAACTGGTTGGATCATACGTCTTGGCATAGCAGTGAGGCATCCCCAATGTCTTTGCACCCTGTAACCTGGCAACCATCTAAAGATGGAGATCGTTTAATTGGTCGCATTTTATTAAATAAGCGTCTAAAAGATGGAAGTGTACCTCGAGATTCAGGAGCAATGCTTGGCTTGAAGGTTGTAGGAGGAAAGATGACTGAATCAGGTCGGCTTTGTGCATTTATTACTAAAGTAAAAAAAGGAAGTTTAGCTGATACTGTAGGACATCTTAGACCAGGTGATGAAGTATTAGAATGGAATGGAAGACTACTGCAAGGAGCCACATTTGAGGAAGTGTACAACATCATTCTAGAATCCAAACCTGAACCACAAGTAGAACTTGTAGTTTCAAGGCCTATTGGAGATATACCGCGAATACCTGATAGCACACATGCACAACTGGAGTCCAGTTCTAGCTCCTTTGAATCTCAAAAAATGGATCGTCCTTCTATTTCTGTTACCTCTCCCATGAGTCCTGGAATGTTGAGGGATGTCCCACAGTTCTTATCAGGACAACTTTCAATAAAACTATGGTTTGACAAGGTTGGTCACCAATTAATAGTTACAATTTTGGGAGCAAAAGATCTCCCTTCCAGGGAAGATGGGAGGCCAAGGAATCCTTATGTTAAAATTTACTTTCTTCCAGACAGAAGTGATAAAAACAAGAGAAGAACTAAAACAGTAAAGAAAACATTGGAACCCAAATGGAACCAAACATTCATTTATTCTCCAGTCCACCGAAGAGAATTTCGGGAACGAATGCTAGAGATTACCCTTTGGGATCAAGCTCGTGTTCGAGAGGAAGAAAGTGAATTCTTAGGCGAGATTTTAATTGAATTAGAAACAGCATTATTAGATGATGAGCCACATTGGTACAAACTTCAGACGCATGATGTCTCTTCATTGCCACTTCCCCACCCTTCTCCATATATGCCACGAAGACAGCTCCATGGAGAGAGCCCAACACGGAGGTTGCAAAGGTCAAAGAGAATAAGTGATAGTGAAGTCTCTGACTATGACTGTGATGATGGAATTGGTGTAGTATCAGATTATCGACATGATGGTCGAGATCTTCAAAGCTCAACATTATCAGTGCCAGAACAAGTAATGTCATCAAACCACTGTTCACCATCAGGGTCTCCTCATCGAGTAGATGTTATAGGAAGGACTAGATCATGGTCACCCAGTGTCCCTCCTCCACAAAGTCGGAATGTGGAACAGGGGCTTCGAGGGACCCGCACTATGACCGGACATTATAATACAATTAGCCGAATGGACAGACATCGTGTCATGGATGACCATTATTCTCCAGATAGAGACAGTCATTTTCTTACTCTACCTCGCTCCAGATACAGTCAGACCATTGACCATCATCACAGGGATGGCAGGGATTGTGAAGCAGCAGATAGACAGCCATATCACAGATCCAGATCAACAGAACAACGGCCTCTCCTTGAGCGGACCACCACCCGCTCCAGATCCACTGAACGTCCTGATACAAACCTCATGAGGTCGATGCCTTCATTAATGACTGGAAGATCTGCCCCTCCTTCACCTGCCTTATCGAGGTCTCATCCTCGTACTGGGTCTGTCCAGACAAGCCCATCAAGTACTCCAGTCGCAGGACGAAGGGGCCGACAGCTTCCACAGCTTCCACCAAAGGGAACGTTGGATAGAAACAATGGAGTCAAGGAGATAGAACCTTATGAAGAAGTTACATGGGAAGACCAGCAGAAAAAGGTGAATGGTACAATAAGTGATGACAAACCATTGCCGAAAAAGAAACACCAGTCTGAGACAGGAAAATTGGTCCTGGAAATTGAAACCCTAAATGTCATGAAAGAACTGGACTCTACAAGGAGAAGATATGCAGGTACTATGGATATAGAGGAGAGAAATCGCCAAATGAAAATTAACAAATACAAACAGGTAGCCGGATCAGATCCCAGACTGGAACAAGATTACCATTCGAAGTATCGATCAGGATGGGATCCTCATAGAGGGGCAGATAATGTTTCTACTAAATCTTCGGACAGTGATGTAAGTGATATATCTGCGGTTTCAAGGACTAGTAGTGCTTCTCGTTTCAGCAGCACAAGCTACATGTCTGTCCAATCAGAACGCCCAGGAGGAAACAAGAAAATCAGTGTCTTTACATCCAAAATGCAAAGCAGACAAATGGGCATATCAGGGAAGAACATGACAAAAAGCACCAGCATCAGTGGAGACATGTGCTCACTGGAGAAGAATGATGGCAGCCAGTCTGACACTGCAGTGGGCACCTTGGGCACCAGTGGCAAAAAGCGGCGCTCTAGCCTTGGTGCCAAAATGGTAGCTATCGTTGGTCTGTCACGGAAAAGTCGCAGTGCTTCTCAGCTCAGCCAAACGGAAGCAGGAGGTAAAAAACTAAGGAGCACTGTCCAAAGAAGTACAGAAACAGGCCTGGCCGTGGAAATGAGGAACTGGATGACTCGACAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAGCTCAGAAGGAAATCTGATTTTCCCTGGTGTTCGCTTGGCCTCTGATAGCCAGTTCAGTGATTTCCTGGATGGCCTTGGCCCTGCTCAGCTAGTGGGACGCCAGACTCTGGCAACACCTGCAATGGGTGACATTCAGGTAGGAATGATGGACAAAAAGGGACAGCTGGAGGTAGAAATCATCCGGGCCCGTGGCCTTGTTGTAAAACCAGGTTCCAAGACACTGCCAGCACCGTATGTAAAAGTGTATCTATTAGATAACGGAGTCTGCATAGCCAAAAAGAAAACAAAAGTGGCAAGAAAAACGCTGGAACCCCTTTACCAGCAGCTATTATCTTTCGAAGAGAGTCCACAAGGAAAAGTTTTACAGATCATCGTCTGGGGAGATTATGGCCGCATGGATCACAAATCTTTTATGGGAGTGGCCCAGATACTTTTAGATGAACTAGAGCTATCCAATATGGTGATCGGATGGTTCAAACTTTTCCCACCTTCCTCCCTAGTAGATCCAACCTTGGCCCCTCTGACAAGAAGAGCTTCCCAATCATCTCTGGAAAGTTCAACTGGACCTTCTTACTCTCGTTCATAG MLSRLFRMHGLFVASHPWEVIVGTVTLTICMMSMNMFTGNNKICGWNYECPKFEEDVLSSDIIILTITRCIAILYIYFQFQNLRQLGSKYILGIAGLFTIFSSFVFSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACVSLVLELSRESREGRPIWQLSHFARVLEEEENKPNPVTQRVKMIMSLGLVLVHAHSRWIADPSPQNSTADTSKVSLGLDENVSKRIEPSVSLWQFYLSKKLHQQFEMYKEQVKKMGEESQQQQEQKGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQPDQKVLRGLRNEEAPQEKKPKLHEQTQFQGPSGDLSVPAVEKSRSHGLTRQHSIKNGSGVKHHIASDIASDRKRSPSVSRDQNRRYDQREEREEYSQYATSDTAMPRSPSDYADRRSQHEPQFYEDSDHLSYRDSNRRSHRHSKEYIVDDEDVESRDEYERQRREEEYQSRYRSDPNLARYPVKPQPYEEQMRIHAEVSRARHERRHSDVSLANADLEDSRISMLRMDRPSRQRSISERRAAMENQRSYSMERTREAQGPSSYAQRTTNHSPPTPRRSPLPIDRPDLRRTDSLRKQHHLDPSSAVRKTKREKMETMLRNDSLSSDQSESVRPPPPKPHKSKKGGKMRQISLSSSEEELASTPEYTSCDDVEIESESVSEKGDMDYNWLDHTSWHSSEASPMSLHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRPIGDIPRIPDSTHAQLESSSSSFESQKMDRPSISVTSPMSPGMLRDVPQFLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQLHGESPTRRLQRSKRISDSEVSDYDCDDGIGVVSDYRHDGRDLQSSTLSVPEQVMSSNHCSPSGSPHRVDVIGRTRSWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDSHFLTLPRSRYSQTIDHHHRDGRDCEAADRQPYHRSRSTEQRPLLERTTTRSRSTERPDTNLMRSMPSLMTGRSAPPSPALSRSHPRTGSVQTSPSSTPVAGRRGRQLPQLPPKGTLDRNNGVKEIEPYEEVTWEDQQKKVNGTISDDKPLPKKKHQSETGKLVLEIETLNVMKELDSTRRRYAGTMDIEERNRQMKINKYKQVAGSDPRLEQDYHSKYRSGWDPHRGADNVSTKSSDSDVSDISAVSRTSSASRFSSTSYMSVQSERPGGNKKISVFTSKMQSRQMGISGKNMTKSTSISGDMCSLEKNDGSQSDTAVGTLGTSGKKRRSSLGAKMVAIVGLSRKSRSASQLSQTEAGGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQFSDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPYVKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGKVLQIIVWGDYGRMDHKSFMGVAQILLDELELSNMVIGWFKLFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30594 VPS33A::SYNE1 ENSG00000139719.11::ENSG00000131018.25 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1164 FALSE NA FALSE NA VPS33A ENSG00000139719.11 protein_coding - - chr12:122229564-122266494:- chr12:122266307:- chr12:122714111-122751041:- chr12:122750854:- SYNE1 ENSG00000131018.25 protein_coding - - chr6:152121687-152637801:- chr6:152135232:- chr6:152442822-152958936:- chr6:152456367:- chr12:122264347,chr12:122264355 chr6:152136694,chr6:152136699 NA NA chr12:122748894,chr12:122748902 chr6:152457829,chr6:152457834 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sec1-PARTIAL|34-102~|1.6e-126 none ["SYNE1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr6] 14 15 14 15 ONLY_REF_SPLICE YES_LDAS 0.382 GT 1.7819 AG 1.9329 ENST00000267199.9 1-102 ENST00000367255.10 25660-26394 chr12|-|[2]122266307-122266408[0]<==>chr6|-|[2]152122436-152122676[2]|[1]152130720-152130778[0]|[2]152132122-152132214[0]|[2]152133276-152133488[0]|[2]152135104-152135232[0] atggcggctcatctgtcctacggccgagtgaacctaaacgtgttgcgcgaggcggtgcgtcgcgagctgcgcgagttcctggacaagtgcgcaggaagcaagGGTTTCCATGAAATGAGCCATGGTTTGCTTCTTATGCTGGAGAACATTGACAGAAGGAAAAATGAAATTGTCCCTATTGATTCTAACCTTGATGCAGAGATACTTCAGGACCATCACAAACAGCTTATGCAAATAAAGCATGAGCTGTTGGAATCCCAACTCAGAGTAGCCTCTTTGCAAGACATGTCTTGCCAACTACTGGTGAATGCTGAAGGAACAGACTGTTTAGAAGCCAAAGAAAAAGTCCATGTTATTGGAAATCGGCTCAAACTTCTCTTGAAGGAGGTCAGTCGTCATATCAAGGAACTGGAGAAGTTATTAGACGTGTCAAGTAGTCAGCAGGATTTGTCTTCCTGGTCTTCTGCTGATGAACTGGACACCTCAGGGTCTGTGAGTCCCACATCAGGAAGGAGCACCCCAAACAGACAGAAAACGCCACGAGGCAAGTGTAGTCTCTCACAGCCTGGACCCTCTGTCAGCAGTCCACATAGCAGGTCCACAAAAGGTGGCTCCGATTCCTCCCTTTCTGAGCCAGGGCCAGGTCGGTCCGGCCGCGGCTTCCTGTTCAGAGTCCTCCGAGCAGCTCTTCCCCTTCAGCTTCTCCTGCTCCTCCTCATCGGGCTTGCCTGCCTTGTACCAATGTCAGAGGAAGACTACAGCTGTGCCCTCTCCAACAACTTTGCCCGGTCATTCCACCCCATGCTCAGATACACGAATGGCCCTCCTCCACTCTGA MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKGFHEMSHGLLLMLENIDRRKNEIVPIDSNLDAEILQDHHKQLMQIKHELLESQLRVASLQDMSCQLLVNAEGTDCLEAKEKVHVIGNRLKLLLKEVSRHIKELEKLLDVSSSQQDLSSWSSADELDTSGSVSPTSGRSTPNRQKTPRGKCSLSQPGPSVSSPHSRSTKGGSDSSLSEPGPGRSGRGFLFRVLRAALPLQLLLLLLIGLACLVPMSEEDYSCALSNNFARSFHPMLRYTNGPPPL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30598 SLC13A3::RILPL2 ENSG00000158296.14::ENSG00000150977.11 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1168 FALSE NA FALSE NA SLC13A3 ENSG00000158296.14 protein_coding - - chr20:46557823-46684467:- chr20:46583572:- chr20:45186462-45313106:- chr20:45212211:- RILPL2 ENSG00000150977.11 protein_coding - - chr12:123415039-123436684:- chr12:123415921:- chr12:123899586-123921231:- chr12:123900468:- chr20:46581855,chr20:46581860 chr12:123416981,chr12:123416983 NA NA chr20:45210494,chr20:45210499 chr12:123901528,chr12:123901530 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Na_sulph_symp|11-571|2.1e-91^CitMHS|50-499|3.2e-50^CitMHS|468-565|9.2e-10 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr12] 8 3 8 3 ONLY_REF_SPLICE YES_LDAS 0.1449 GT 1.9329 AG 1.5546 ENST00000279027.9 1-1219 ENST00000280571.10 606-636 chr20|-|[0]46583572-46583669[2]|[1]46588059-46588163[2]|[1]46589160-46589255[2]|[1]46592404-46592529[2]|[1]46596157-46596342[2]|[1]46599971-46600037[1]|[0]46610446-46610609[2]|[1]46613460-46613725[0]|[2]46651311-46651421[0]<==>chr12|-|[2]123415891-123415921[2] atggcggcgctggcagcagcggccaagaaggtgtggagcgcgcggcggctgctggtgctgctgttcacgccgctcgcgctgctgccggtggtcttcgccctcccgcccaaggaaggccgctgcttgtttgtcatcctgctcatggcggtgtactggtgcacggaggccctgccgctctcagtgacggcgctgctgcccatcgtcctcttccccttcatgggcatcttgccctccaacaaggtctgcccccagtacttcctcgacaccaacttcctcttcctcagtgggctgatcatggccagcgccattgaggagtggaacctgcaccggcgaatcgccctcaagatcctgatgcttgttggagtccagccggccaggctcatcctggggatgatggtgaccacctcgttcttgtccatgtggctgagcaacaccgcctccactgccatgatgcttcccattgccaatgccatcctgaaaagtctctttggccagaaggaggttcgaaaggaccccagccaggagagtgaagagaacacagctgctgtgcggagaaacggcctacacactgtgcccacggagatgcagtttctcgccagcacagaagccaaagaccaccctggggagacagaggttccactggatctgccggctgactccaggaaggaggatgaatatcgtcggaacatctggaagggcttcctcatctccatcccctactcagccagtattgggggcacagccacactcacgggcacagcccctaacctcatcctgcttggccagctcaagagtttctttccgcagtgtgacgtggtgaatttcggctcctggttcattttcgccttccctcttatgctgttgttcctgttggcaggctggctctggatctccttcctgtacgggggactgagcttcaggggctggaggaagaataaatctgagataagaaccaatgcagaagatagggctcgagctgtaattcgggaagaataccagaacctggggcccatcaagtttgccgaacaggctgttttcatccttttctgcatgtttgccatcctcctcttcacccgggacccgaagttcatccctggctgggccagcctcttcaatcctgggtttctttctgatgctgtcaccggcgtggctattgtcaccatcttgttcttcttcccgtcccaaaggccctctctcaagtggtggtttgacttcaaagGTTCTTTTTTCGATCGGGGAAACAGACCTAG MAALAAAAKKVWSARRLLVLLFTPLALLPVVFALPPKEGRCLFVILLMAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLVGVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSLFGQKEVRKDPSQESEENTAAVRRNGLHTVPTEMQFLASTEAKDHPGETEVPLDLPADSRKEDEYRRNIWKGFLISIPYSASIGGTATLTGTAPNLILLGQLKSFFPQCDVVNFGSWFIFAFPLMLLFLLAGWLWISFLYGGLSFRGWRKNKSEIRTNAEDRARAVIREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPGWASLFNPGFLSDAVTGVAIVTILFFFPSQRPSLKWWFDFKGSFFDRGNRP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30601 DTNB::HADHA ENSG00000138101.20::ENSG00000084754.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1171 FALSE NA FALSE NA DTNB ENSG00000138101.20 protein_coding - - chr2:25377198-25673647:- chr2:25531473:- chr2:25600067-25896516:- chr2:25754342:- HADHA ENSG00000084754.12 protein_coding - - chr2:26190635-26244672:- chr2:26204196:- chr2:26413504-26467540:- chr2:26427065:- chr2:25514944,chr2:25514946,chr2:25514979 chr2:26210147,chr2:26210146,chr2:26210639 NA NA chr2:25737813,chr2:25737815,chr2:25737848 chr2:26433016,chr2:26433015,chr2:26433508 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EF-hand_2|17-140|6e-46^EF-hand_3|145-232|2.4e-38^ZZ|241-280|2.6e-12^SOGA|277-297|10^FapA|413-513|2.8e-07^Nup54|434-521|0.0039^SOGA|437-504|1.3e-05^Seryl_tRNA_N|439-514|7e-05^MerR-DNA-bind|441-457|2.1^DUF4407|448-532|6.1e-05^CRISPR_Cse2|454-520|0.0014^MerR-DNA-bind|473-506|0.0042^EF-hand_2|499-518|7.1^EF-hand_2|565-604|0.46^FapA|575-617|0.24^SOGA|585-606|6.1^Seryl_tRNA_N|585-614|0.17 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.52Mb] 7 5 7 3.89 ONLY_REF_SPLICE YES_LDAS 0.1434 GT 1.9329 AG 1.8892 ENST00000288642.12 1-1001 ENST00000492433.2 1086-2379 chr2|-|[1]25531473-25531597[0]|[2]25576838-25577004[1]|[0]25580721-25580826[0]|[2]25596086-25596240[1]|[0]25607236-25607321[2]|[1]25628171-25628384[1]|[0]25639014-25639094[1]|[0]25652594-25652660[0]<==>chr2|-|[2]26191250-26191628[2]|[1]26192310-26192424[1]|[0]26193577-26193772[0]|[2]26194570-26194638[0]|[2]26195092-26195232[0]|[2]26197691-26197777[0]|[2]26201149-26201320[2]|[1]26204062-26204196[2] atgattgaggaaagtgggaacaagcggaagaccatggcagagaagaggcagctgttcatagaaatgcgtgctcagaattttgatgtcatacgactatcaacttacagaacagcctgcaaattacgatttgtacaaaaacgatgcaaccttcatcttgttgatatctggaacatgattgaagccttccgagacaatggccttaatacactggaccataccaccgagatcagtgtgtcccgcctcgaaactgtcatctcctccatctactatcagttgaacaagcgccttccttctactcaccaaattagtgtggaacaatctatcagcctcctcctcaactttatgattgctgcatatgacagtgagggccgaggcaagttgacggtattttcagttaaagctatgttagcaaccatgtgtggtggaaaaatgctggacaaattgagatatgttttctcccagatgtcagattccaatggcttaatgatatttagcaagtttgaccagtttctgaaggaagttctgaagctcccaacagctgtctttgaagggccatcttttggttacacagagcactcagtccgcacctgttttccacagcagagaaagataatgctaaatatgtttttagacacaatgatggctgaccctcctccccagtgccttgtctggctacctctcatgcacaggcttgcccatgttgagaatgtcttccatcccgtggagtgctcctactgccgatgtgagagtatgatgggtttccggtaccgatgccagcagtgccacaactatcagctctgccagaattgcttttggcgtggccatgccggcggccctcacagcaaccagcaccagatgaaggagcattcctcttggaaatctcctgcaaagaagctgagccatgcaattagtaaatctttggggtgtgtacccacgagagaacccccgcatcctgtttttcctgagcaaccagagaaaccacttgaccttgcacatatagtGCATCTGGCTATTCTTGGTGCAGGGCTGATGGGAGCAGGCATCGCCCAAGTCTCCGTGGATAAGGGGCTAAAGACTATACTTAAAGATGCCACCCTCACTGCGCTAGACCGAGGACAGCAACAAGTGTTCAAAGGATTGAATGACAAAGTGAAGAAGAAAGCTCTAACATCATTTGAAAGGGATTCCATCTTCAGCAACTTGACTGGGCAGCTTGATTACCAAGGTTTTGAAAAGGCCGACATGGTGATTGAAGCTGTGTTTGAGGACCTTAGTCTTAAGCACAGAGTGCTAAAGGAAGTAGAAGCGGTGATTCCAGATCACTGTATCTTTGCCAGTAACACATCTGCTCTCCCAATCAGTGAAATCGCTGCTGTCAGCAAAAGACCTGAGAAGGTGATTGGCATGCACTACTTCTCTCCCGTGGACAAGATGCAGCTGCTGGAGATTATCACGACCGAGAAAACTTCCAAAGACACCAGTGCTTCAGCTGTAGCAGTTGGTCTCAAGCAGGGGAAGGTCATCATTGTGGTTAAGGATGGACCTGGCTTCTATACTACCAGGTGTCTTGCGCCCATGATGTCTGAAGTCATCCGAATCCTCCAGGAAGGAGTTGACCCGAAGAAGCTGGATTCCCTGACCACAAGCTTTGGCTTTCCTGTGGGTGCCGCCACACTGGTGGATGAAGTTGGTGTGGATGTAGCGAAACATGTGGCGGAAGATCTGGGCAAAGTCTTTGGGGAGCGGTTTGGAGGTGGAAACCCAGAACTGCTGACACAGATGGTGTCCAAGGGCTTCCTAGGTCGTAAATCTGGGAAGGGCTTTTACATCTATCAGGAGGGTGTGAAGAGGAAGGATTTGAATTCTGACATGGATAGTATTTTAGCGAGTCTGAAGCTGCCTCCTAAGTCTGAAGTCTCATCAGACGAAGACATCCAGTTCCGCCTGGTGACAAGATTTGTGAATGAGGCAGTCATGTGCCTGCAAGAGGGGATCTTGGCCACACCTGCAGAGGGAGACATCGGAGCCGTCTTTGGGCTTGGCTTCCCGCCTTGTCTGGGAGGTTGGTCTCGCAGGTTGGGAAGGAAGCTCACTTTAGCCTGGAGCCCGTGTTGCGTCTCCTTCAACGAAGTCCTCTTTCTCTATTCAGGGCCTTTCCGCTTTGTGGATCTGTATGGCGCCCAGAAGATAGTGGACCGGCTCAAGAAATATGAAGCTGCCTATGGAAAACAGTTCACCCCATGCCAGCTGCTAGCTGACCATGCTAACAGCCCTAACAAGAAGTTCTACCAGTGA MIEESGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDNGLNTLDHTTEISVSRLETVISSIYYQLNKRLPSTHQISVEQSISLLLNFMIAAYDSEGRGKLTVFSVKAMLATMCGGKMLDKLRYVFSQMSDSNGLMIFSKFDQFLKEVLKLPTAVFEGPSFGYTEHSVRTCFPQQRKIMLNMFLDTMMADPPPQCLVWLPLMHRLAHVENVFHPVECSYCRCESMMGFRYRCQQCHNYQLCQNCFWRGHAGGPHSNQHQMKEHSSWKSPAKKLSHAISKSLGCVPTREPPHPVFPEQPEKPLDLAHIVHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLVDEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMCLQEGILATPAEGDIGAVFGLGFPPCLGGWSRRLGRKLTLAWSPCCVSFNEVLFLYSGPFRFVDLYGAQKIVDRLKKYEAAYGKQFTPCQLLADHANSPNKKFYQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30602 FBXL2::CMTM8 ENSG00000153558.17::ENSG00000170293.9 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1166 FALSE NA FALSE NA FBXL2 ENSG00000153558.17 protein_coding + + chr3:33277025-33403662:+ chr3:33375418:+ chr3:33318517-33445154:+ chr3:33416910:+ CMTM8 ENSG00000170293.9 protein_coding + + chr3:32238679-32370321:+ chr3:32357373:+ chr3:32280171-32411813:+ chr3:32398865:+ chr3:33375574,chr3:33376012,chr3:33375570 chr3:32352088,chr3:32351878,chr3:32352081 NA NA chr3:33417066,chr3:33417504,chr3:33417062 chr3:32393580,chr3:32393370,chr3:32393573 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box-like|14-57|7.5e-18^F-box|14-53|1.1e-11^F-box_4|14-41|4.3e-05^LRR_4|51-61|7.4^LRR_6|80-100|0.17^LRR_4|80-120|1.1e-06^LRR_1|80-88|0.68^Mating_N|92-134|0.00099^LRR_6|102-120|0.00059^LRR_8|103-138|0.025^LRR_1|105-116|0.067^LRR_8|109-166|0.00034^LRR_6|129-151|4e-05^F-box|129-134|3.8^LRR_4|131-170|1.5e-05^LRR_1|131-141|0.14^LRR_6|155-177|3.4e-08^LRR_1|157-168|0.014^Mating_N|174-207|0.073^LRR_6|184-203|0.39^LRR_4|184-223|0.0014^LRR_1|184-193|8^F-box_4|195-220|1.5^LRR_6|207-230|1.7e-05^LRR_8|207-207|0.83^LRR_1|210-220|0.31^F-box-like|231-241|4.3^LRR_8|231-244|0.93^LRR_4|235-275|9.6e-05^LRR_6|236-255|0.14^LRR_1|236-247|0.2^LRR_8|252-265|1.7^LRR_4|260-302|0.0065^LRR_6|270-275|6.1^LRR_4|288-327|0.00029^LRR_1|288-300|1^F-box_4|302-317|5.6^LRR_8|309-324|0.011^LRR_6|310-334|2.7e-07^LRR_1|313-326|0.01^LRR_4|342-380|1.7e-05^LRR_8|342-373|0.00071^LRR_1|342-364|0.033^LRR_6|343-362|1.1^LRR_6|368-383|4.9^LRR_1|368-377|1.7 MARVEL-PARTIAL|~148-162|2.4e-26^YlaC|153-163|0.34 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.91Mb] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1581 GT 1.8892 AG 1.5058 ENST00000484457.6 1-788 ENST00000307526.4 148-522 chr3|+|[0]33277513-33277515[2]|[0]33297664-33297725[1]|[2]33358967-33359021[2]|[0]33359283-33359357[2]|[0]33364625-33364719[1]|[2]33373092-33373160[1]|[2]33373260-33373355[1]|[2]33373578-33373704[2]|[0]33373847-33373921[2]|[0]33375288-33375418[1]<==>chr3|+|[0]32357373-32357546[2]|[0]32367872-32367988[2]|[0]32369884-32369967[2] atggttttctcaaacaatgatgaaggccttattaacaaaaagttacccaaagaacttctgttaagaatattttccttcttggatatagtaactttgtgccgatgtgcacagatttccaaggcttggaacatcttagccctggatggaagcaactggcaaagaatagatctttttaactttcaaacagatgtagagggtcgagtggtggaaaatatctcgaagcgatgcggtggattcctgaggaagctcagcttgcgaggctgcattggtgttggggattcctccttgaagacctttgcacagaactgccgaaacattgaacatttgaacctcaatggatgcacaaaaatcactgacagcacgtgttatagccttagcagattctgttccaagctgaaacatctggatctgacctcctgtgtgtctattacaaacagctccttgaaggggatcagtgagggctgccgaaacctggagtacctgaacctctcttggtgtgatcagatcacgaaggatggcatcgaggcactggtgcgaggttgtcgaggcctgaaagccctgctcctgaggggctgcacacagttagaagatgaagctctgaaacacattcagaattactgccatgagcttgtgagcctcaacttgcagtcctgctcacgtatcacggatgaaggtgtggtgcagatatgcaggggctgtcaccggctacaggctctctgcctttcgggttgcagcaacctcacagatgcctctcttacagccctgggtttgaactgtccgcgactgcaGTTCTGGGGCTGCTGGTATGGACGCTTATTGCTGGAACTGAGTACTTCCGGGTCCCCGCATTTGGCTGGGTCATGTTTGTAGCTGTATTTTACTGGGTCCTCACCGTCTTCTTCCTCATTATCTACATAACAATGACCTACACCAGGATTCCCCAGGTGCCCTGGACAACAGTGGGCCTGTGCTTTAACGGCAGTGCCTTCGTCTTGTACCTCTCTGCCGCTGTTGTAGATGCATCTTCCGTCTCCCCTGAGAGGGACAGTCACAACTTCAACAGCTGGGCGGCCTCATCGTTCTTTGCCTTCCTGGTCACCATCTGCTACGCTGGAAATACATATTTCAGTTTTATAGCATGGAGATCCAGGACCATACAGTGA MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQFWGCWYGRLLLELSTSGSPHLAGSCL*LYFTGSSPSSSSLST*Q*PTPGFPRCPGQQWACALTAVPSSCTSLPLL*MHLPSPLRGTVTTSTAGRPHRSLPSWSPSATLEIHISVL*HGDPGPYS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30608 DOCK4::BMT2 ENSG00000128512.24::ENSG00000164603.12 FUOV1 SRR8615736 SRR8639235 OVARY carcinoma (serous_carcinoma) primary star-fusion TRUE TRUE TRUE 1169 FALSE NA FALSE NA DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111863372:- chr7:111366166-111846462:- chr7:111503428:- BMT2 ENSG00000164603.12 protein_coding - - chr7:112819147-112939875:- chr7:112832675:- chr7:112459202-112579930:- chr7:112472730:- chr7:111854375,chr7:111854380 chr7:112851254,chr7:112851256 NA NA chr7:111494431,chr7:111494436 chr7:112491309,chr7:112491311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SH3_2|10-62|1.6e-09^SH3_1|16-59|1.9e-06^DOCK_N|70-392|9.5e-94^DOCK-C2|198-213|2.8^DOCK-C2|267-305|0.26^DOCK-C2|397-581|1.4e-59^DHR-2_Lobe_A|673-704|0.68^DHR-2_Lobe_A|1183-1307|4e-11^DHR-2_Lobe_B|1366-1443|1.9e-17^DHR-2_Lobe_C|1493-1587|3.1e-22 none ["CCLE_StarF2019"] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1186 GT 1.8256 AG 1.9656 ENST00000437633.6 1-2473 ENST00000297145.9 474-1218 chr7|-|[0]111863372-111863564[0]|[2]111867984-111868154[0]|[2]111869574-111869655[2]|[1]111871990-111872090[0]|[2]111872269-111872352[0]|[2]111872467-111872564[1]|[0]111877030-111877186[0]|[2]111895612-111895718[1]|[0]111900374-111900536[0]|[2]111901677-111901801[1]|[0]111915779-111915904[1]|[0]111935540-111935628[2]|[1]111940110-111940242[1]|[0]111944811-111944871[0]|[2]111945717-111945798[2]|[1]111977132-111977283[0]|[2]111984306-111984390[2]|[1]111989015-111989163[0]|[2]111994135-111994231[2]|[1]111998448-111998503[0]|[2]112000494-112000534[1]|[0]112004048-112004131[1]|[0]112206102-112206138[0]<==>chr7|-|[2]112821744-112822373[0]|[2]112832561-112832675[2] atgtggatacctacggagcacgagaaatacggcgtggttattgccagtttccgaggaaccgttccatatggcctgtcattggaaattggagatacagttcagatcctggagaagtgtgatggctggtacagaggatttgccttaaaaaacccaaatatcaagggtatatttccttccagctacgttcacttgaaaaatgcctgtgtaaagaacaaaggacaatttgaaatggttattcccactgaagactctgttatcacagaaatgacatcaacattaagagactggggaaccatgtggaaacaactctatgtgcgtaatgaaggcgatctcttccaccggctgtggcacatcatgaatgaaatcctggacctgaggcggcaggtgctggtgggccacctcacccacgaccggatgaaggacgtgaagcgccacattactgcccggcttgactggggcaatgaacaactgggactggacctggtgcctaggaaagagtacgcaatggtggatccggaagacatcagcattactgagctctaccgattgatggaacatcgacatcggaagaaagacaccccggtgcaggccagcagtcaccacctctttgtccagatgaagagcctcatgtgttccaacctgggagaggagctggaggtcatcttctcactctttgacagtaaagagaaccggccaatcagtgagagatttttcttgaggctgaatagaaacgggcttcccaaagcccctgataaaccggaacgacattgctccctctttgtggatttgggcagcagtgagctaagaaaggacatttatatcaccgtgcacattatccgaatcggtcgaatgggagcaggagaaaaaaagaatgcctgtagtgtccagtaccgacgaccctttggctgtgcagttcttagcatcgctgacctgctaacaggagagacaaaggatgacctcattctgaaagtatacatgtgtaacacagagagtgagtggtaccaaatccatgagaacatcatcaaaaagctgaatgcacgttataacttgactggctccaatgcaggtttagcagtttccttacagctattgcacggagacattgaacaaatcagaagggaatattcatcagtattttctcatggagtatccataacaaggaagctgggattttcaaatattattatgcctggtgaaatgaggaatgatttatatatcactattgaaaggggagaatttgagaaaggagggaagagcgtggccagaaatgtggaagttacgatgttcattgtagacagtagtggccaaaccctgaaggattttatctccttcggctctggggagccaccagccagtgagtaccactcctttgtgctttaccataacaacagtcccaggtggtctgaactgctgaaacttcccattcctgtggataaattccggggtgcacacatccgcttcgagtttcggcattgttccacaaaggagaaaggagagaagaagttgtttgggttttcttttgtccctctgatgcaagaagatggtaggactcttccagatggcactcatgagctcatcgtgcataagtgtgaagaaaacacaaatcttcaggatactacccgctacctcaaacttcccttttccaagggcattttccttgggaataataatcaagccatgaaggccacaaaggagtccttttgtattacatcttttctctgttccacaaaactcacacaaaatggtgatatgcttgatcttttgaaatggagaacccacccagacaagatcactggctgtctctctaaattaaaagaaattgatggctcagagatagtaaagtttctgcaggatacactggataccttatttggaattttagatgaaaattcccaaaaatatgggtctaaagtgtttgattctttggttcacataataaatttgctgcaagatagcaaatttcatcattttaaacctgtaatggacacttacattgagagtcattttgctggggcacttgcatacagagatctcatcaaagtgctcaaatggtacgtggaccggatcacagaagcagagcggcaagagcatatccaggaggtgctgaaggcacaagaatacatttttaagtatatagttcaatctcgaaggctgttttcccttgccactggtgggcaaaacgaagaggagttccgctgctgcattcaggagcttctcatgtcagtccgtttctttctttcgcaagagagcaaagggtctggagcattatctcagtcacaggctgtgtttctgagctctttccctgccgtgtactcagaactgttgaagctctttgatgtccgggaagtagccaacttggtccaggacaccctgggcagtctgccgaccatcctgcatgtggatgattccctgcaggccatcaaactgcagtgcattggcaaaaccgtggaaagccagctttataccaacccagGTTGCTACAAGCCTCAGGAAAAATCAGATTACTTGATGTTGGCAGCTGCTTTAACCCATTTCTGAAGTTTGAAGAATTTCTAACTGTTGGCATAGATATTGTACCTGCTGTAGAGAGTGTCTATAAATGTGATTTCCTGAACTTACAGCTTCAGCAACCACTCCAGCTTGCACAGGATGCTATAGATGCTTTTTTGAAGCAGCTGAAAAACCCTATTGATTCTCTTCCTGGAGAGCTTTTCCATGTGGTTGTTTTCTCTCTCCTTCTTTCTTATTTTCCATCTCCTTACCAGCGATGGATTTGCTGCAAGAAAGCCCATGAACTGTTAGTGTTAAATGGTTTATTACTAATCATCACACCTGATTCCTCCCATCAGAACCGTCATGCTATGATGATGAAAAGCTGGAAGATTGCTATAGAGTCCCTGGGCTTTAAACGCTTCAAGTACTCAAAATTTTCACATATGCATCTGATGGCATTTAGGAAAATCTCTCTAAAAACCACAAGTGACTTGGTTAGTAGGAACTACCCAGGAATGTTATATATTCCTCAAGATTTCAACAGTATAGAAGATGAGGAATATTCTAACCCTTCCTGCTATGTTCGATCAGATATAGAAGATGAACAACTAGCATATGGTTTCACAGAACTCCCTGATGCGCCATATGACTCAGATTCTGGAGAAAGTCAAGCCAGCTCTATTCCTTTCTATGAGCTAGAAGACCCCATATTACTTTTAAGTTAA MWIPTEHEKYGVVIASFRGTVPYGLSLEIGDTVQILEKCDGWYRGFALKNPNIKGIFPSSYVHLKNACVKNKGQFEMVIPTEDSVITEMTSTLRDWGTMWKQLYVRNEGDLFHRLWHIMNEILDLRRQVLVGHLTHDRMKDVKRHITARLDWGNEQLGLDLVPRKEYAMVDPEDISITELYRLMEHRHRKKDTPVQASSHHLFVQMKSLMCSNLGEELEVIFSLFDSKENRPISERFFLRLNRNGLPKAPDKPERHCSLFVDLGSSELRKDIYITVHIIRIGRMGAGEKKNACSVQYRRPFGCAVLSIADLLTGETKDDLILKVYMCNTESEWYQIHENIIKKLNARYNLTGSNAGLAVSLQLLHGDIEQIRREYSSVFSHGVSITRKLGFSNIIMPGEMRNDLYITIERGEFEKGGKSVARNVEVTMFIVDSSGQTLKDFISFGSGEPPASEYHSFVLYHNNSPRWSELLKLPIPVDKFRGAHIRFEFRHCSTKEKGEKKLFGFSFVPLMQEDGRTLPDGTHELIVHKCEENTNLQDTTRYLKLPFSKGIFLGNNNQAMKATKESFCITSFLCSTKLTQNGDMLDLLKWRTHPDKITGCLSKLKEIDGSEIVKFLQDTLDTLFGILDENSQKYGSKVFDSLVHIINLLQDSKFHHFKPVMDTYIESHFAGALAYRDLIKVLKWYVDRITEAERQEHIQEVLKAQEYIFKYIVQSRRLFSLATGGQNEEEFRCCIQELLMSVRFFLSQESKGSGALSQSQAVFLSSFPAVYSELLKLFDVREVANLVQDTLGSLPTILHVDDSLQAIKLQCIGKTVESQLYTNPGCYKPQEKSDYLMLAAALTHF*SLKNF*LLA*ILYLL*RVSINVIS*TYSFSNHSSLHRML*MLF*SS*KTLLILFLESFSMWLFSLSFFLIFHLLTSDGFAARKPMNC*C*MVYY*SSHLIPPIRTVML***KAGRLL*SPWALNASSTQNFHICI*WHLGKSL*KPQVTWLVGTTQECYIFLKISTV*KMRNILTLPAMFDQI*KMNN*HMVSQNSLMRHMTQILEKVKPALFLSMS*KTPYYF*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30612 SIRT6::TARM1 ENSG00000077463.15::ENSG00000248385.8 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1172 TRUE 2079 TRUE 803 SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4182474:- chr19:4174106-4182563:- chr19:4182471:- TARM1 ENSG00000248385.8 protein_coding - - chr19:54069895-54081365:- chr19:54075918:- chr19:54573149-54584634:- chr19:54579170:- chr19:4181759,chr19:4181974,chr19:4181976 chr19:54080776,chr19:54080816,chr19:54080815 NA NA chr19:4181756,chr19:4181971,chr19:4181973 chr19:54584045,chr19:54584085,chr19:54584084 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Ig_2-PARTIAL|~35-103|1.3e-11^ig-PARTIAL|~35-105|9.3e-11^Ig_3-PARTIAL|~35-98|6.5e-09^V-set|39-52|0.41^I-set|75-98|0.0009^V-set|78-102|0.0016^Egh16-like|92-103|2.9^Ig_2|125-216|3.7e-09^Ig_3|125-197|3.6e-07^ig|134-204|2.5e-07^V-set|135-147|0.093^I-set|169-196|0.0039^V-set|174-201|0.012^Egh16-like|174-224|5.1e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:49.89Mb] 45 7 45 5.78 ONLY_REF_SPLICE YES_LDAS 0.5487 GT 1.7056 AG 1.7465 ENST00000600938.5 1-66 ENST00000432826.2 35-816 chr19|-|[2]4182474-4182539[0]<==>chr19|-|[2]54070003-54070160[1]|[0]54073920-54074216[1]|[0]54074824-54075114[1]|[0]54075883-54075918[1] atgtcggtgaattacgcggcggggctgtcgccgtacgcggacaagggcaagtgcggcctcccggagGACTGTGCGTGGGCCAAGGAGACACAAGGGGAGATGGGTCACTGCCCAAGCCGTCCCTCAGTGCCTGGCCCAGCTCGGTGGTCCCTGCCAACAGCAATGTGACGCTGCGATGTTGGACTCCTGCCAGAGGTGTGAGCTTTGTTCTCAGGAAGGGAGGAATTATTCTGGAGTCCCCGAAGCCCCTTGATTCTACAGAGGGCGCGGCCGAATTTCACCTCAATAATCTAAAAGTCAGAAATGCTGGAGAGTACACCTGTGAATACTACAGAAAAGCATCCCCCCACATCCTTTCACAGCACAGTGACGTCCTTCTACTGTTGGTGACAGGACATTTATCTAAACCTTTCCTCCGAACCTACCAAAGGGGTACAGTGACCGCAGGTGGAAGGGTGACTCTGCAGTGCCAGAAGCGAGACCAATTGTTTGTGCCTATCATGTTCGCTCTACTGAAGGCAGGGACGCCATCACCCATCCAGCTGCAGAGTCCAGCGGGGAAGGAGATAGACTTCTCTCTGGTGGACGTGACAGCCGGCGATGCTGGGAACTACAGCTGCATGTACTACCAGACAAAGTCTCCCTTCTGGGCCTCAGAACCCAGTGATCAGCTTGAGATATTGGTGACAGTTCCCCCAGGTACCACATCGAGCAACTACTCCCTGGGTAACTTCGTACGACTGGGTCTGGCTGCCGTAATTGTGGTTATCATGGGAGCTTTCCTGGTGGAGGCCTGGTACAGCCGGAATGTGTCTCCAGGTGAATCAGAGGCCTTCAAACCAGAGTGA MSVNYAAGLSPYADKGKCGLPEDCAWAKETQGEMGHCPSRPSVPGPARWSLPTAM*RCDVGLLPEV*ALFSGREELFWSPRSPLILQRARPNFTSII*KSEMLESTPVNTTEKHPPTSFHSTVTSFYCW*QDIYLNLSSEPTKGVQ*PQVEG*LCSARSETNCLCLSCSLY*RQGRHHPSSCRVQRGRR*TSLWWT*QPAMLGTTAACTTRQSLPSGPQNPVISLRYW*QFPQVPHRATTPWVTSYDWVWLP*LWLSWELSWWRPGTAGMCLQVNQRPSNQS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30615 SIRT6::TARM1 ENSG00000077463.15::ENSG00000248385.8 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1173 TRUE 2079 TRUE 803 SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4182474:- chr19:4174106-4182563:- chr19:4182471:- TARM1 ENSG00000248385.8 protein_coding - - chr19:54069895-54081365:- chr19:54075114:- chr19:54573149-54584634:- chr19:54578366:- chr19:4181759,chr19:4181974,chr19:4181976 chr19:54080776,chr19:54080816,chr19:54080815 NA NA chr19:4181756,chr19:4181971,chr19:4181973 chr19:54584045,chr19:54584085,chr19:54584084 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Ig_2-PARTIAL|~71-103|1.3e-11^ig-PARTIAL|~71-105|9.3e-11^Ig_3-PARTIAL|~71-98|6.5e-09^I-set|75-98|0.0009^V-set|78-102|0.0016^Egh16-like|92-103|2.9^Ig_2|125-216|3.7e-09^Ig_3|125-197|3.6e-07^ig|134-204|2.5e-07^V-set|135-147|0.093^I-set|169-196|0.0039^V-set|174-201|0.012^Egh16-like|174-224|5.1e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:49.89Mb] 21 4 21 1.22 ONLY_REF_SPLICE YES_LDAS 0.2401 GT 1.7056 AG 1.8892 ENST00000600938.5 1-66 ENST00000432826.2 71-816 chr19|-|[2]4182474-4182539[0]<==>chr19|-|[2]54070003-54070160[1]|[0]54073920-54074216[1]|[0]54074824-54075114[1] atgtcggtgaattacgcggcggggctgtcgccgtacgcggacaagggcaagtgcggcctcccggagGGTCACTGCCCAAGCCGTCCCTCAGTGCCTGGCCCAGCTCGGTGGTCCCTGCCAACAGCAATGTGACGCTGCGATGTTGGACTCCTGCCAGAGGTGTGAGCTTTGTTCTCAGGAAGGGAGGAATTATTCTGGAGTCCCCGAAGCCCCTTGATTCTACAGAGGGCGCGGCCGAATTTCACCTCAATAATCTAAAAGTCAGAAATGCTGGAGAGTACACCTGTGAATACTACAGAAAAGCATCCCCCCACATCCTTTCACAGCACAGTGACGTCCTTCTACTGTTGGTGACAGGACATTTATCTAAACCTTTCCTCCGAACCTACCAAAGGGGTACAGTGACCGCAGGTGGAAGGGTGACTCTGCAGTGCCAGAAGCGAGACCAATTGTTTGTGCCTATCATGTTCGCTCTACTGAAGGCAGGGACGCCATCACCCATCCAGCTGCAGAGTCCAGCGGGGAAGGAGATAGACTTCTCTCTGGTGGACGTGACAGCCGGCGATGCTGGGAACTACAGCTGCATGTACTACCAGACAAAGTCTCCCTTCTGGGCCTCAGAACCCAGTGATCAGCTTGAGATATTGGTGACAGTTCCCCCAGGTACCACATCGAGCAACTACTCCCTGGGTAACTTCGTACGACTGGGTCTGGCTGCCGTAATTGTGGTTATCATGGGAGCTTTCCTGGTGGAGGCCTGGTACAGCCGGAATGTGTCTCCAGGTGAATCAGAGGCCTTCAAACCAGAGTGA MSVNYAAGLSPYADKGKCGLPEGHCPSRPSVPGPARWSLPTAM*RCDVGLLPEV*ALFSGREELFWSPRSPLILQRARPNFTSII*KSEMLESTPVNTTEKHPPTSFHSTVTSFYCW*QDIYLNLSSEPTKGVQ*PQVEG*LCSARSETNCLCLSCSLY*RQGRHHPSSCRVQRGRR*TSLWWT*QPAMLGTTAACTTRQSLPSGPQNPVISLRYW*QFPQVPHRATTPWVTSYDWVWLP*LWLSWELSWWRPGTAGMCLQVNQRPSNQS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30617 ZNF699::SIRT6 ENSG00000196110.8::ENSG00000077463.15 G361 SRR8615738 SRR8639238 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1175 FALSE NA FALSE NA ZNF699 ENSG00000196110.8 protein_coding - - chr19:9291140-9309838:- chr19:9305072:- chr19:9401816-9420514:- chr19:9415748:- SIRT6 ENSG00000077463.15 protein_coding - - chr19:4174109-4182566:- chr19:4180909:- chr19:4174106-4182563:- chr19:4180906:- chr19:9304824,chr19:9304826,chr19:9304826 chr19:4181961,chr19:4181959,chr19:4181961 NA NA chr19:9415500,chr19:9415502,chr19:9415502 chr19:4181958,chr19:4181956,chr19:4181958 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB-PARTIAL|18-48~|4.2e-29 SIR2-PARTIAL|~67-75|9.6e-09^SIR2|86-221|2e-21^TPP_enzyme_M|200-265|1.4e-07 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:5.11Mb] 15 13 15 12.6 ONLY_REF_SPLICE YES_LDAS 0.2982 GT 1.4256 AG 1.7232 ENST00000591998.6 1-48 ENST00000337491.7 67-1068 chr19|-|[2]9305072-9305119[0]<==>chr19|-|[2]4174617-4174946[0]|[2]4175028-4175151[2]|[1]4175680-4175760[2]|[1]4175842-4175937[2]|[1]4177079-4177138[2]|[1]4179104-4179286[2]|[1]4180782-4180909[0] atggaggaagaaagaaaaactgctgagttacagaaaaatagaatacagATCTTCGACCCCCCGGAGGAGCTGGAGCGGAAGGTGTGGGAACTGGCGAGGCTGGTCTGGCAGTCTTCCAGTGTGGTGTTCCACACGGGTGCCGGCATCAGCACTGCCTCTGGCATCCCCGACTTCAGGGGTCCCCACGGAGTCTGGACCATGGAGGAGCGAGGTCTGGCCCCCAAGTTCGACACCACCTTTGAGAGCGCGCGGCCCACGCAGACCCACATGGCGCTGGTGCAGCTGGAGCGCGTGGGCCTCCTCCGCTTCCTGGTCAGCCAGAACGTGGACGGGCTCCATGTGCGCTCAGGCTTCCCCAGGGACAAACTGGCAGAGCTCCACGGGAACATGTTTGTGGAAGAATGTGCCAAGTGTAAGACGCAGTACGTCCGAGACACAGTCGTGGGCACCATGGGCCTGAAGGCCACGGGCCGGCTCTGCACCGTGGCTAAGGCAAGGGGGCTGCGAGCCTGCAGGGGAGAGCTGAGGGACACCATCCTAGACTGGGAGGACTCCCTGCCCGACCGGGACCTGGCACTCGCCGATGAGGCCAGCAGGAACGCCGACCTGTCCATCACGCTGGGTACATCGCTGCAGATCCGGCCCAGCGGGAACCTGCCGCTGGCTACCAAGCGCCGGGGAGGCCGCCTGGTCATCGTCAACCTGCAGCCCACCAAGCACGACCGCCATGCTGACCTCCGCATCCATGGCTACGTTGACGAGGTCATGACCCGGCTCATGAAGCACCTGGGGCTGGAGATCCCCGCCTGGGACGGCCCCCGTGTGCTGGAGAGGGCGCTGCCACCCCTGCCCCGCCCGCCCACCCCCAAGCTGGAGCCCAAGGAGGAATCTCCCACCCGGATCAACGGCTCTATCCCCGCCGGCCCCAAGCAGGAGCCCTGCGCCCAGCACAACGGCTCAGAGCCCGCCAGCCCCAAACGGGAGCGGCCCACCAGCCCTGCCCCCCACAGACCCCCCAAAAGGGTGAAGGCCAAGGCGGTCCCCAGCTGA MEEERKTAELQKNRIQIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRERPTSPAPHRPPKRVKAKAVPS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30636 MAP4K4::AFF3 ENSG00000071054.17::ENSG00000144218.21 GAMG SRR8615742 SRR8639239 CENTRAL_NERVOUS_SYSTEM glioma primary star-fusion TRUE TRUE TRUE 1177 FALSE NA FALSE NA MAP4K4 ENSG00000071054.17 protein_coding + + chr2:101696850-101894690:+ chr2:101698538:+ chr2:102313312-102511152:+ chr2:102315000:+ AFF3 ENSG00000144218.21 protein_coding - - chr2:99545419-100192428:- chr2:99837524:- chr2:100161881-100808890:- chr2:100453986:- chr2:101790038,chr2:101790037 chr2:99862604,chr2:99862605 NA NA chr2:102406500,chr2:102406499 chr2:100479066,chr2:100479067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|25-123~|2.7e-66^PK_Tyr_Ser-Thr-PARTIAL|26-123~|2.9e-47^ABC1|31-57|0.026^ABC1-PARTIAL|102-123~|1e-07 AF-4-PARTIAL|~949-951|0.79^AFF4_CHD|987-1250|1.9e-123^AF4_int|1216-1220|3 ["AFF3:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr2:1.55Mb] 23 13 23 13 ONLY_REF_SPLICE YES_LDAS 0.3691 GT 1.8892 AG 1.7819 ENST00000347699.8 1-123 ENST00000409579.5 949-3756 chr2|+|[0]101698081-101698137[2]|[0]101698473-101698538[2]<==>chr2|-|[2]99551474-99551595[1]|[0]99554311-99554534[2]|[1]99554683-99554732[0]|[2]99558875-99558968[2]|[1]99560365-99560436[2]|[1]99565487-99565623[0]|[2]99568852-99568915[2]|[1]99578327-99578451[0]|[2]99582798-99582999[2]|[1]99587154-99587278[0]|[2]99593195-99594289[0]|[2]99601435-99601621[2]|[1]99649626-99649666[0]|[2]99672538-99672589[2]|[1]99727077-99727128[1]|[0]99744104-99744140[0]|[2]99752221-99752301[0]|[2]99837477-99837524[0] atggcgaacgactcccctgcaaaaagtctggtggacatcgacctctcctccctgcgggatcctgctgggatttttgagctggtggaagtggttggaaatggcacctatggacaagtctataagGAGAGTAGATCTGGAGAAACCAACAGCTGTGTTGAAGAAATAATCCGGGAGATGACCTGGCTTCCACCACTTTCTGCTATTCAAGCACCTGGCAAAGTGGAACCAACCAAATTTCCATTTCCAAATAAGGACTCTCAGCTTGTATCCTCTGGACACAATAATCCAAAGAAAGGTGATGCAGAGCCAGAGAGTCCAGACAATGGCACATCGAATACATCAATGCTGGAAGATGACCTTAAGCTAAGCAGTGATGAAGAGGAGAATGAACAGCAGGCAGCTCAGAGAACGGCTCTCCGCGCTCTCTCTGACAGCGCCGTGGTCCAGCAGCCCAACTGCAGAACCTCGGTGCCTTCCAGCAAGGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCTCCTCCAGCGACTCAGAGAGCAGCTCCGGATCTGACTCGGAGACCGAGAGCAGCTCCAGCGAGAGTGAGGGCAGCAAGCCCCCCCACTTCTCCAGCCCCGAGGCTGAACCGGCATCCTCTAACAAGTGGCAGCTGGATAAATGGCTAAACAAAGTTAATCCCCACAAGCCTCCTATTCTGATCCAAAATGAAAGCCACGGGTCAGAGAGCAATCAGTACTACAACCCGGTGAAAGAGGACGTCCAGGACTGTGGGAAAGTCCCCGACGTTTGCCAGCCCAGCCTGAGAGAGAAGGAGATCAAGAGCACTTGCAAGGAGGAGCAAAGGCCAAGGACAGCCAACAAGGCCCCTGGGAGTAAAGGCGTGAAGCAGAAGTCCCCGCCCGCGGCCGTGGCCGTGGCGGTGAGCGCAGCCGCCCCGCCACCCGCAGTGCCCTGTGCGCCCGCGGAGAACGCGCCCGCGCCTGCCCGGAGGTCCGCGGGCAAGAAGCCCACCAGGCGCACCGAGAGGACCTCAGCCGGGGACGGCGCCAACTGCCACCGGCCCGAGGAGCCCGCGGCCGCGGACGCGCTGGGGACGAGCGTGGTGGTCCCCCCGGAGCCCACCAAAACCAGGCCCTGTGGCAACAACAGAGCGAGCCACCGCAAGGAGCTGCGCTCCTCCGTGACCTGCGAGAAGCGCCGCACGCGGGGGCTAAGCAGGATCGTCCCCAAATCCAAGGAGTTCATTGAGACAGAGTCGTCATCTTCATCCTCCTCCTCGGACTCCGACCTGGAGTCCGAGCAGGAGGAGTACCCTCTGTCCAAAGCACAGACCGTGGCTGCCTCTGCCTCCTCCGGGAATGATCAGAGGCTGAAGGAGGCCGCTGCCAACGGGGGCAGTGGTCCTAGGGCCCCTGTAGGCTCCATCAACGCCAGGACCACCAGTGACATCGCCAAGGAGCTGGAGGAGCAGTTCTACACACTGGTCCCCTTTGGCCGGAACGAACTTCTCTCCCCTCTAAAGGACAGTGATGAGATCAGGTCTCTCTGGGTCAAAATCGACCTGACCCTCCTGTCCAGGATCCCAGAACACCTGCCCCAGGAGCCAGGGGTATTGAGCGCCCCTGCCACCAAGGACTCTGAGAGCGCACCGCCCAGCCACACCTCGGACACACCTGCAGAAAAGGCTTTGCCAAAATCCAAGAGGAAACGCAAGTGTGACAACGAAGACGACTACAGGGAGATCAAGAAGTCCCAGGGAGAGAAAGACAGCTCTTCAAGACTGGCCACCTCCACCAGTAATACTTTGTCTGCAAACCACTGCAACATGAACATCAACAGTGTGGCAATACCAATAAATAAAAATGAAAAAATGCTTCGGTCGCCCATCTCACCCCTCTCTGATGCATCTAAACACAAATACACCAGCGAGGACTTAACTTCTTCCAGCCGACCTAATGGCAACAGTTTGTTTACTTCAGCCTCTTCCAGCAAAAAGCCTAAGGCCGACAGCCAGCTGCAGCCTCACGGCGGAGACCTCACGAAAGCAGCTCACAACAATTCTGAAAACATTCCCCTCCACAAGTCACGGCCGCAGACGAAGCCGTGGTCTCCAGGCTCCAACGGCCACAGGGACTGCAAGAGGCAGAAACTTGTCTTCGATGATATGCCTCGCAGTGCCGATTATTTTATGCAAGAAGCTAAACGAATGAAGCATAAAGCAGATGCAATGGTGGAAAAGTTTGGAAAGGCTTTGAACTATGCTGAAGCAGCATTGTCGTTTATCGAGTGTGGAAATGCAATGGAACAAGGCCCCATGGAATCCAAATCTCCTTATACGATGTATTCAGAAACAGTAGAGCTCATCAGGTATGCTATGAGACTAAAAACCCACTCAGGCCCCAATGCCACACCAGAAGACAAACAACTGGCTGCATTATGTTACCGATGCCTGGCCCTCCTGTACTGGCGGATGTTTCGACTCAAAAGGGACCACGCTGTAAAGTATTCAAAAGCACTAATCGACTATTTCAAGAACTCATCTAAAGCCGCCCAAGCCCCATCTCCGTGGGGGGCCAGTGGAAAGAGCACTGGAACCCCATCCCCCATGTCTCCCAACCCCTCTCCCGCCAGCTCCGTGGGGTCTCAGGGCAGCCTCTCCAACGCCAGCGCCCTGTCCCCGTCGACCATCGTCAGCATCCCACAGCGCATCCACCAGATGGCGGCCAACCACGTCAGCATCACCAACAGCATCCTGCACAGCTACGACTACTGGGAGATGGCCGACAACCTGGCCAAGGAAAACCGAGAATTCTTCAACGACCTGGATCTGCTCATGGGGCCGGTCACCCTGCACAGCAGCATGGAGCACCTGGTCCAGTACTCCCAACAGGGCCTGCACTGGCTGCGGAACAGCGCCCACCTGTCATAG MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKESRSGETNSCVEEIIREMTWLPPLSAIQAPGKVEPTKFPFPNKDSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKWLNKVNPHKPPILIQNESHGSESNQYYNPVKEDVQDCGKVPDVCQPSLREKEIKSTCKEEQRPRTANKAPGSKGVKQKSPPAAVAVAVSAAAPPPAVPCAPAENAPAPARRSAGKKPTRRTERTSAGDGANCHRPEEPAAADALGTSVVVPPEPTKTRPCGNNRASHRKELRSSVTCEKRRTRGLSRIVPKSKEFIETESSSSSSSSDSDLESEQEEYPLSKAQTVAASASSGNDQRLKEAAANGGSGPRAPVGSINARTTSDIAKELEEQFYTLVPFGRNELLSPLKDSDEIRSLWVKIDLTLLSRIPEHLPQEPGVLSAPATKDSESAPPSHTSDTPAEKALPKSKRKRKCDNEDDYREIKKSQGEKDSSSRLATSTSNTLSANHCNMNINSVAIPINKNEKMLRSPISPLSDASKHKYTSEDLTSSSRPNGNSLFTSASSSKKPKADSQLQPHGGDLTKAAHNNSENIPLHKSRPQTKPWSPGSNGHRDCKRQKLVFDDMPRSADYFMQEAKRMKHKADAMVEKFGKALNYAEAALSFIECGNAMEQGPMESKSPYTMYSETVELIRYAMRLKTHSGPNATPEDKQLAALCYRCLALLYWRMFRLKRDHAVKYSKALIDYFKNSSKAAQAPSPWGASGKSTGTPSPMSPNPSPASSVGSQGSLSNASALSPSTIVSIPQRIHQMAANHVSITNSILHSYDYWEMADNLAKENREFFNDLDLLMGPVTLHSSMEHLVQYSQQGLHWLRNSAHLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Mitogen-activated protein kinase kinase kinase kinase 4 STE STE20 MSN O95819 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE AF4/FMR2 family, member 3 1 ALL, T-ALL leukaemia_lymphoma oncogene, fusion translocation 30638 RARB::NGLY1 ENSG00000077092.20::ENSG00000151092.18 RL952 SRR8615743 SRR8670763 ENDOMETRIUM carcinoma (mixed_adenosquamous_carcinoma) primary star-fusion TRUE TRUE TRUE 1179 FALSE NA FALSE NA RARB ENSG00000077092.20 protein_coding + + chr3:24687887-25597932:+ chr3:25501323:+ chr3:24729378-25639423:+ chr3:25542814:+ NGLY1 ENSG00000151092.18 protein_coding - - chr3:25718944-25790039:- chr3:25764311:- chr3:25760435-25831530:- chr3:25805802:- chr3:25549807,chr3:25549807 chr3:25768611,chr3:25768610 NA NA chr3:25591298,chr3:25591298 chr3:25810102,chr3:25810101 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C4|87-155|3.1e-36^Topoisom_I_N|129-202|0.00012^Hormone_recep|152-181|0.21^Hormone_recep|227-399|2.6e-28^zf-C4|332-339|0.32 PUB|144-158|1.7^Transglut_core|232-312|4.8e-22^Rad4|294-376|6.2e-13^PAW|339-363|2.1^PAW|415-609|1.3e-82 ["RARB:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.12Mb] 95 36 95 36 ONLY_REF_SPLICE YES_LDAS 1.3306 GT 1.8295 AG 1.8892 ENST00000687676.1 1-469 ENST00000417874.6 121-1839 chr3|+|[0]25174398-25174575[0]|[1]25461193-25461341[2]|[0]25501182-25501323[0]<==>chr3|-|[2]25719460-25719635[1]|[0]25720014-25720191[0]|[2]25729133-25729318[0]|[2]25732319-25732483[0]|[2]25733872-25733982[0]|[2]25736004-25736149[1]|[0]25737334-25737455[2]|[1]25739577-25739799[1]|[0]25751098-25751263[0]|[2]25764066-25764311[0] atgaccaccagcggccacgcatgtccggtcccagcagtgaacggacacatgactcactatccagccacaccctacccgttactctttccacctgtcatcggaggactttccctgcctcccctccatggccttcatggacatccgcctccgagtggatgcagcaccccgtcgccggcaacaattgaaacacagagcaccagctctgaggaactcgtcccaagccccccatctccacttcctccccctcgagtgtacaaaccctgcttcgtctgccaggacaaatcatcagggtaccactatggggtcagcgcctgtgagggatgtaagggctttttccgcagaagtattcagaagaatatgatttacacttgtcaccgagataagaactgtgttattaataaagtcaccaggaatcgatgccaatactgtcgactccagaagtgctttgaagtgggaatgtccaaagaatGGAGAAACACATCTCATCTTTCCTAAAAAAGCTTCAGTGGAGCAGCTGCAAAAAATTCGTGACCTGATTGCCATAGAGAGAAGTAGCAGACTGGATGGCTCAAATAAGAGCCACAAAGTAAAGTCATCTCAGCAACCTGCAGCCAGTACCCAGCTTCCTACAACACCATCTTCAAATCCCAGTGGGTTAAACCAGCACACAAGGAACCGTCAAGGGCAGTCATCAGATCCACCATCTGCTTCAACGGTTGCTGCTGACTCAGCCATTCTAGAAGTTCTTCAGTCCAACATTCAGCATGTGCTGGTCTATGAAAATCCTGCTCTTCAGGAGAAAGCGTTGGCTTGTATTCCGGTCCAAGAACTAAAAAGGAAATCACAAGAAAAGTTATCGAGAGCTAGAAAATTGGATAAAGGTATCAATATAAGTGATGAGGATTTTCTTTTGCTGGAGCTTTTGCACTGGTTTAAGGAAGAATTTTTTCACTGGGTGAATAACGTTTTGTGCAGCAAATGTGGTGGACAGACTAGGTCTAGAGATAGATCATTACTGCCCAGTGATGATGAGCTGAAGTGGGGTGCAAAGGAAGTGGAAGATCATTACTGTGATGCCTGCCAGTTCAGCAATCGATTCCCAAGATATAATAACCCTGAGAAACTTTTGGAAACAAGATGTGGACGGTGTGGCGAGTGGGCCAATTGTTTTACACTGTGCTGCCGAGCTGTAGGGTTTGAAGCTCGCTATGTTTGGGATTACACAGACCATGTCTGGACAGAAGTCTATTCTCCTTCTCAGCAGCGGTGGCTGCACTGTGATGCATGTGAAGATGTCTGTGACAAGCCACTCCTTTATGAAATAGGATGGGGCAAGAAGCTTTCCTATGTCATAGCATTTTCAAAAGATGAGGTAGTTGATGTCACTTGGCGATATTCCTGCAAACATGAAGAGGTGATTGCCAGAAGAACTAAGGTTAAAGAAGCATTACTTCGAGACACTATTAATGGGCTTAATAAGCAGAGGCAACTGTTTTTGTCAGAAAACAGAAGGAAAGAACTTCTCCAGAGGATAATTGTGGAGCTTGTTGAATTTATATCTCCCAAAACCCCTAAACCTGGAGAACTTGGGGGAAGAATATCTGGGTCAGTGGCTTGGAGAGTAGCCCGAGGTGAAATGGGTCTACAGAGAAAAGAAACCTTGTTTATTCCCTGTGAAAATGAGAAGATTTCTAAACAGCTCCACCTTTGTTACAATATTGTGAAAGATCGTTATGTTCGAGTTTCAAATAACAATCAAACCATTTCTGGATGGGAGAATGGCGTGTGGAAAATGGAATCTATATTCAGAAAAGTTGAAACAGACTGGCACATGGTATATTTGGCCCGAAAGGAAGGATCATCTTTTGCTTATATTTCCTGGAAGTTTGAGTGTGGGTCAGTTGGCCTAAAAGTAGATAGCATTTCTATTAGAACAAGTAGTCAAACTTTTCAGACTGGAACAGTAGAATGGAAATTGCGATCTGATACAGCACAAGTAGAACTGACAGGCGATAACAGTCTTCACTCCTATGCTGATTTTTCTGGTGCCACTGAAGTTATTTTGGAAGCAGAATTAAGCAGAGGAGATGGTGATGTCGCTTGGCAACACACCCAGCTGTTTAGACAAAGCTTAAATGACCATGAAGAAAATTGTTTGGAGATAATTATAAAATTCAGTGACCTTTGA MTTSGHACPVPAVNGHMTHYPATPYPLLFPPVIGGLSLPPLHGLHGHPPPSGCSTPSPATIETQSTSSEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKEWRNTSHLS*KSFSGAAAKNS*PDCHREK*QTGWLK*EPQSKVISATCSQYPASYNTIFKSQWVKPAHKEPSRAVIRSTICFNGCC*LSHSRSSSVQHSACAGL*KSCSSGESVGLYSGPRTKKEITRKVIES*KIG*RYQYK**GFSFAGAFALV*GRIFSLGE*RFVQQMWWTD*V*R*IITAQ***AEVGCKGSGRSLL*CLPVQQSIPKI**P*ETFGNKMWTVWRVGQLFYTVLPSCRV*SSLCLGLHRPCLDRSLFSFSAAVAAL*CM*RCL*QATPL*NRMGQEAFLCHSIFKR*GS*CHLAIFLQT*RGDCQKN*G*RSITSRHY*WA**AEATVFVRKQKERTSPEDNCGAC*IYISQNP*TWRTWGKNIWVSGLESSPR*NGSTEKRNLVYSL*K*EDF*TAPPLLQYCERSLCSSFK*QSNHFWMGEWRVENGIYIQKS*NRLAHGIFGPKGRIIFCLYFLEV*VWVSWPKSR*HFY*NK*SNFSDWNSRMEIAI*YSTSRTDRR*QSSLLC*FFWCH*SYFGSRIKQRRW*CRLATHPAV*TKLK*P*RKLFGDNYKIQ*PL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30643 EZH2::ZCCHC8 ENSG00000106462.12::ENSG00000033030.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1182 FALSE NA FALSE NA EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148816684:- chr7:148504349-148581413:- chr7:148513776:- ZCCHC8 ENSG00000033030.16 protein_coding - - chr12:122471600-122500932:- chr12:122478292:- chr12:122956147-122985479:- chr12:122962839:- chr7:148815886,chr7:148815889 chr12:122478674,chr12:122478674 NA NA chr7:148512978,chr7:148512981 chr12:122963221,chr12:122963221 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EZH2_WD-Binding|39-68|4.8e-21^PRC2_HTH_1|158-249|2e-34^CDC45|183-217|0.0021^Myb_DNA-bind_7|224-246|0.0027^Ezh2_MCSS|257-314|4.5e-36^SET|309-332|0.95^PRC2_HTH_1|382-415|0.17^CDC45|382-414|0.0048^Myb_DNA-bind_7|434-473|0.029^preSET_CXC|550-554|7^preSET_CXC|564-595|1.3e-13^preSET_CXC|606-609|7^SET|628-731|6.8e-29 none ["EZH2:FoundationOne_panel","EZH2:ArcherDX_panel","EZH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr12] 95 79 95 79 ONLY_REF_SPLICE YES_LDAS 2.2976 GT 1.5058 AG 1.8256 ENST00000320356.7 1-1505 ENST00000536306.5 427-1410 chr7|-|[1]148816684-148816778[0]|[2]148817222-148817391[1]|[0]148817877-148818117[0]|[2]148819596-148819687[1]|[0]148826454-148826632[2]|[1]148827164-148827266[1]|[0]148828740-148828880[1]|[0]148829728-148829848[0]|[2]148832634-148832750[0]|[2]148846470-148846598[0]|[2]148847182-148847298[0]<==>chr12|-|[2]122473497-122474275[1]|[0]122477841-122477958[0]|[2]122478206-122478292[0] atgggccagactgggaagaaatctgagaagggaccagtttgttggcggaagcgtgtaaaatcagagtacatgcgactgagacagctcaagaggttcagacgagctgatgaagtaaagagtatgtttagttccaatcgtcagaaaattttggaaagaacggaaatcttaaaccaagaatggaaacagcgaaggatacagcctgtgcacatcctgacttctgtgagctcattgcgcgggactagggagtgttcggtgaccagtgacttggattttccaacacaagtcatcccattaaagactctgaatgcagttgcttcagtacccataatgtattcttggtctcccctacagcagaattttatggtggaagatgaaactgttttacataacattccttatatgggagatgaagttttagatcaggatggtactttcattgaagaactaataaaaaattatgatgggaaagtacacggggatagagaatgtgggtttataaatgatgaaatttttgtggagttggtgaatgcccttggtcaatataatgatgatgacgatgatgatgatggagacgatcctgaagaaagagaagaaaagcagaaagatctggaggatcaccgagatgataaagaaagccgcccacctcggaaatttccttctgataaaatttttgaagccatttcctcaatgtttccagataagggcacagcagaagaactaaaggaaaaatataaagaactcaccgaacagcagctcccaggcgcacttcctcctgaatgtacccccaacatagatggaccaaatgctaaatctgttcagagagagcaaagcttacactcctttcatacgcttttctgtaggcgatgttttaaatatgactgcttcctacatcgtaagtgcaattattcttttcatgcaacacccaacacttataagcggaagaacacagaaacagctctagacaacaaaccttgtggaccacagtgttaccagcatttggagggagcaaaggagtttgctgctgctctcaccgctgagcggataaagaccccaccaaaacgtccaggaggccgcagaagaggacggcttcccaataacagtagcaggcccagcacccccaccattaatgtgctggaatcaaaggatacagacagtgatagggaagcagggactgaaacggggggagagaacaatgataaagaagaagaagagaagaaagatgaaacttcgagctcctctgaagcaaattctcggtgtcaaacaccaataaagatgaagccaaatattgaacctcctgagaatgtggagtggagtggtgctgaagcctcaatgtttagagtcctcattggcacttactatgacaatttctgtgccattgctaggttaattgggaccaaaacatgtagacaggtgtatgagtttagagtcaaagaatctagcatcatagctccagctcccgctgaggatgtggatactcctccaaggaaaaagaagaggaaacaccgGAATGGAGGATCTTTGGTTCCATACCAATGCAGGCATGTCAGCAGAAGGATGTGTTTGCCAATTACCTTACTTCTAACTTCCAAGCGCCAGGTGTGAAGTCTGGCAACAAGAGGTCTTCATCTCACTCTAGCCCAGGTAGTCCAAAGAAGCAGAAGAATGAAAGCAACTCAGCGGGATCTCCCGCCGACATGGAGCTCGATTCAGATATGGAGGTACCACATGGTTCTCAGAGCAGCGAAAGTTTTCAGTTTCAACCACCATTACCTCCTGACACTCCTCCACTCCCCCGGGGAACTCCTCCACCCGTCTTCACCCCTCCACTCCCAAAGGGCACCCCGCCGCTGACTCCCAGTGACTCACCCCAGACCAGAACAGCATCTGGAGCTGTGGATGAGGACGCACTGACTCTAGAAGAACTTGAAGAACAGCAGAGGCGGATCTGGGCAGCTCTTGAGCAGGCCGAGAGCGTAAACAGCGACTCCGACGTTCCTGTGGACACACCTTTAACTGGCAATTCCGTTGCCTCATCACCTTGTCCAAATGAGCTAGACCTCCCTGTCCCGGAGGGAAAAACATCTGAAAAGCAGACGCTGGATGAGCCTGAGGTACCAGAGATTTTTACAAAGAAATCAGAAGCTGGACATGCCTCCAGTCCAGACTCTGAGGTGACATCACTTTGTCAGAAGGAAAAAGCAGAGTTGGCTCCGGTAAACACTGAAGGTGCCCTTCTTGATAATGGCAGTGTCGTACCAAACTGTGACATCAGCAATGGGGGCAGCCAGAAGCTCTTTCCTGCAGACACCAGTCCTTCAACGGCCACTAAAATTCATAGCCCTATACCTGACATGAGCAAATTTGCAACTGGAATCACGCCATTTGAATTTGAGAATATGGCAGAATCTACTGGAATGTACCTCAGGATAAGAAGCTTGTTAAAGAACTCACCCCGAAACCAGCAGAAAAACAAAAAGGCCTCTGAATAA MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHRKCNYSFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDETSSSSEANSRCQTPIKMKPNIEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSIIAPAPAEDVDTPPRKKKRKHRNGGSLVPYQCRHVSRRMCLPITLLLTSKRQV*SLATRGLHLTLAQVVQRSRRMKATQRDLPPTWSSIQIWRYHMVLRAAKVFSFNHHYLLTLLHSPGELLHPSSPLHSQRAPRR*LPVTHPRPEQHLELWMRTH*L*KNLKNSRGGSGQLLSRPRA*TATPTFLWTHL*LAIPLPHHLVQMS*TSLSRREKHLKSRRWMSLRYQRFLQRNQKLDMPPVQTLR*HHFVRRKKQSWLR*TLKVPFLIMAVSYQTVTSAMGAARSSFLQTPVLQRPLKFIALYLT*ANLQLESRHLNLRIWQNLLECTSG*EAC*RTHPETSRKTKRPLN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense TRUE zinc finger, CCHC domain containing 8 2 Spitzoid tumour epithelial fusion translocation 30644 CCDC91::ASIC2 ENSG00000123106.11::ENSG00000108684.15 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1183 FALSE NA FALSE NA CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28484165:+ chr12:28286182-28734444:+ chr12:28637098:+ ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33112067:- chr17:31340105-32501983:- chr17:31439085:- chr12:28509421,chr12:28509420,chr12:28509419 chr17:33127442,chr17:33127443,chr17:33127444 NA NA chr12:28662354,chr12:28662353,chr12:28662352 chr17:31454460,chr17:31454461,chr17:31454462 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr17] 73 42 73 42 ONLY_REF_SPLICE YES_LDAS 1.5185 GT 1.1589 AG 1.7056 ENST00000381259.5 1-1215 ENST00000225823.7 709-1692 chr12|+|[0]28257216-28257245[2]|[0]28259364-28259442[0]|[1]28305649-28305806[2]|[0]28306742-28306945[2]|[0]28307645-28307749[2]|[0]28362438-28362515[2]|[0]28391304-28391411[2]|[0]28450161-28450253[2]|[0]28450350-28450418[2]|[0]28452478-28452654[2]|[0]28484052-28484165[2]<==>chr17|-|[2]33013965-33014066[0]|[2]33015971-33016039[0]|[2]33017605-33017684[1]|[0]33021219-33021310[2]|[1]33023861-33024014[1]|[0]33025926-33025982[1]|[0]33028242-33028392[0]|[2]33088863-33088990[1]|[0]33111917-33112067[0] atggatgatgatgattttggtggttttgaggctgcggagacttttgatggtggaagtggtgaaacccaaacaacatctcctgctattccttgggctgcctttcctgcagtatctggagtccatctttcaccatcttctcctgagattgtactggaccgtgaccactcttcttccattggctgcctctcttctgatgccattatttcatcaccagagaatacacatgcagcaaatagcattgtgagtcaaactattccaaaagcacagattcagcaatcaacacacactcatctggatatctcactttttccattgggtttaactgatgaaaaaagtaatggaacaattgcccttgtggatgattctgaggatcctggagccaatgtatctaacatacagcttcagcaaaaaatttcaagtctggagattaaactcaaagtatctgaagaagaaaaacagagaattaaacaggatgtggaatcattgatggaaaagcataatgtcttagaaaaaggctttctaaaagaaaaagagcaagaggccatttcttttcaagatagatacaaagaacttcaggaaaaacataaacaagaattggaagacatgaggaaagctggtcacgaagccctcagcattattgtggatgaatataaggcactactgcagtcttcagttaagcaacaagtagaagctattgaaaaacagtacatttctgcaattgagaaacaggcacacaagtgtgaggagttgctaaatgctcagcatcagaggctccttgaaatgctagatacagagaaggaactgttaaaagaaaaaataaaggaagctttgattcagcaatctcaagaacagaaggaaatattggaaaagtgtttggaggaagaaaggcaaagaaataaagaggcattagtatccgctgcaaagcttgaaaaagaagcagtgaaggatgcagttttaaaagtcgtagaagaagaaagaaaaaatttagaaaaagcgcatgctgaagaaagggaattatggaagacagaacatgcaaaagatcaagaaaaagtatctcaggaaattcaaaaagctatacaagaacaaagaaaaataagtcaggaaactgttaaggcagcaataatagaagagcagaaacgaagtgaaaaggctgtggaagaggcagtgaaaagaacaagagatgaattgatagagtatataaaagaacagaaaaggGTGTTTACAAAATATGGGAAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAACCTCTGCTCACCACGGTCAAGGGGGGGACAGGCAACGGGCTGGAGATCATGCTGGACATTCAGCAGGATGAGTACCTGCCCATCTGGGGAGAGACAGAGGAAACGACATTTGAAGCAGGAGTGAAAGTTCAGATCCACAGTCAGTCTGAGCCACCTTTCATCCAAGAGCTGGGCTTTGGGGTGGCTCCAGGGTTCCAGACCTTTGTGGCCACACAGGAGCAGAGGCTCACATACCTGCCCCCACCGTGGGGTGAGTGCCGATCCTCAGAGATGGGCCTCGACTTTTTTCCTGTTTACAGCATCACCGCCTGTAGGATTGACTGTGAGACCCGCTACATTGTGGAAAACTGCAACTGCCGCATGGTTCACATGCCAGGGGATGCCCCTTTTTGTACCCCTGAGCAGCACAAGGAGTGTGCAGAGCCTGCCCTAGGTCTGTTGGCGGAAAAGGACAGCAATTACTGTCTCTGCAGGACACCCTGCAACCTAACCCGCTACAACAAAGAGCTCTCCATGGTGAAGATCCCCAGCAAGACATCAGCCAAGTACCTTGAGAAGAAATTTAACAAATCAGAAAAATATATCTCAGAGAACATCCTTGTTCTGGATATATTTTTTGAAGCTCTCAATTATGAGACAATTGAACAGAAGAAGGCGTATGAAGTTGCTGCCTTACTTGGTGATATTGGTGGTCAGATGGGATTGTTCATTGGTGCTAGTATCCTTACAATACTAGAGCTCTTTGATTATATTTATGAGCTGATCAAAGAGAAGCTATTAGACCTGCTTGGCAAAGAGGAGGACGAAGGGAGCCACGATGAGAATGTGAGTACTTGTGACACAATGCCAAACCACTCTGAAACCATCAGTCACACTGTGAACGTGCCCCTGCAGACGACCCTGGGGACCTTGGAGGAGATTGCCTGCTGA MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPAVSGVHLSPSSPEIVLDRDHSSSIGCLSSDAIISSPENTHAANSIVSQTIPKAQIQQSTHTHLDISLFPLGLTDEKSNGTIALVDDSEDPGANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKALLQSSVKQQVEAIEKQYISAIEKQAHKCEELLNAQHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRVFTKYGKCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCLCRTPCNLTRYNKELSMVKIPSKTSAKYLEKKFNKSEKYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLDLLGKEEDEGSHDENVSTCDTMPNHSETISHTVNVPLQTTLGTLEEIAC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30645 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE FALSE FALSE NA TRUE 4807 TRUE 1797 ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85496166:- chr1:85947964-86043933:- chr1:85961849:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 42 115 42 106.85 ONLY_REF_SPLICE YES_LDAS 1.9655 GT 1.5628 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30649 THADA::ENSG00000285548 ENSG00000115970.19::ENSG00000285548.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE FALSE NA TRUE 4808 TRUE 1798 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43320446:- chr2:43457990-43823177:- chr2:43547585:- ENSG00000285548 ENSG00000285548.1 lncRNA + + chr2:50324643-50345598:+ chr2:50335909:+ chr2:50551781-50572736:+ chr2:50563047:+ chr2:43318595,chr2:43318598 chr2:50330651,chr2:50330648 NA NA chr2:43545734,chr2:43545737 chr2:50557789,chr2:50557786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["THADA:Oncogene"] 28 17 28 14.42 ONLY_REF_SPLICE YES_LDAS 0.5601 GT 1.5656 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30650 SFSWAP::EP400 ENSG00000061936.10::ENSG00000183495.15 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1185 FALSE NA FALSE NA SFSWAP ENSG00000061936.10 protein_coding + + chr12:131711081-131799738:+ chr12:131714953:+ chr12:132195626-132284283:+ chr12:132199498:+ EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132050323:+ chr12:132434487-132565005:+ chr12:132534868:+ chr12:131716896,chr12:131716895 chr12:132047180,chr12:132047176 NA NA chr12:132201441,chr12:132201440 chr12:132531725,chr12:132531721 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DRY_EERY|35-155|2.1e-39^DRY_EERY|167-182|2^Surp|210-255|1.6e-19^DRY_EERY|258-280|0.19^Surp|459-502|2.2e-17 none ["EP400:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.15Mb] 28 22 28 22 ONLY_REF_SPLICE YES_LDAS 0.6602 GT 1.8892 AG 1.7232 ENST00000261674.9 1-520 ENST00000389561.7 7201-9372 chr12|+|[0]131711230-131711447[1]|[2]131714071-131714240[0]|[1]131714822-131714953[0]<==>chr12|+|[0]132050323-132050459[1]|[2]132050599-132050655[1]|[2]132053146-132053224[2]|[0]132053343-132053597[2]|[0]132054974-132055019[0]|[1]132055099-132055208[2]|[0]132062110-132062323[0]|[1]132062466-132062701[2]|[0]132064668-132064886[2]|[0]132066774-132066969[0]|[1]132067362-132067486[2]|[0]132069495-132069641[2]|[0]132076516-132076593[2]|[0]132077401-132077673[2] atgtacggcgcgagcgggggccgcgccaaacccgagaggaaaagcggcgcgaaggaggaggccgggccaggcggtgccggcggtgggggcagccgagtggagctcttggttttcggctatgcctgcaagctgttccgggacgacgagcgggccctggctcaggaacagggacagcacctcatcccctggatgggggaccacaagatcctcatcgacagatatgatggacgtggtcacctgcatgacctttctgagtacgatgctgagtattccacgtggaacagagattatcagctgtctgaagaggaggcgcgaatagaggccctgtgtgatgaagagaggtatttagccttgcatacggacttgcttgaggaggaggcaaggcaagaggaagaatacaagcgattgagtgaagcactagcagaggatgggagctacaatgccgtggggttcacttacggtagcgactattacgacccgtcagagccgacggaggaggaggagccttccaaacagagagAGTAAAAACAACCGTCCTCTCCGTACGAGCCAGATCTATGCCCAGGATGAGAATGCCACACACACCCAGCTGTACACGAGCCACTTTGACTTAATGAAAATGACTGCTGGCAAGAGGAGTCCCCCAATCAAACCTCTGCTTGGCATGAATCCCTTTCAGAAGAACCCCAAGCACGCGTCTGTGTTGGCAGAAAGTGGAATCAACTATGACAAGCCGCTGCCTCCCATCCAGGTGGCATCTCTCCGTGCAGAGCGAATCGCAAAAGAGAAAAAGGCTCTGGCTGATCAGCAGAAGGCACAGCAGCCGGCCGTGGCCCAGCCACCCCCGCCCCAGCCGCAGCCCCCACCACCCCCGCAGCAGCCACCGCCACCGCTGCCACAACCACAGGCAGCGGGCAGCCAGCCGCCAGCAGGGCCACCAGCTGTCCAGCCCCAACCCCAGCCACAGCCCCAGACCCAGCCACAGCCTGTGCAGGCCCCAGCGAAGGCGCAGCCCGCAATCACGACGGGGGGCAGTGCAGCCGTACTGGCAGGAACCATTAAAACATCAGTTACTGGGACGAGCATGCCCACTGGTGCCGTGAGTGGAAATGTGATCGTGAACACCATCGCAGGGGTCCCAGCTGCCACCTTCCAGTCCATCAACAAGCGCCTGGCGTCGCCAGTGGCTCCTGGGGCCTTGACTACGCCGGGAGGCTCTGCTCCCGCCCAGGTGGTGCACACCCAGCCCCCGCCACGGGCAGTCGGCTCCCCAGCCACGGCGACCCCTGACCTGGTGTCCATGGCAACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCTCGGCCGTGGTCACTACCAACCTGACCCCAGTGCAGACCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGCCACAGGAGTTCAGCTCCCTGGAAAAACCATCACACCTGCACATTTCCAGCTTCTCAGGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGACGACGACGACCTCTCAGGTGCAAGTTCCACAGATCCAGGGCCAGGCCCAGTCCCCAGCACAGATCAAAGCTGTGGGCAAGCTGACGCCGGAACACCTCATCAAAATGCAGAAGCAGAAACTGCAGATGCCCCCGCAGCCCCCACCGCCACAGGCCCAGTCTGCGCCCCCGCAGCCAACAGCCCAAGTGCAAGTGCAGACCTCGCAGCCGCCGCAGCAGCAGAGCCCCCAGCTCACGACGGTCACGGCCCCAAGGCCTGGTGCCCTGCTGACGGGCACCACCGTGGCCAACCTCCAGGTGGCCCGGCTCACCCGGGTTCCCACTTCTCAGCTGCAGGCGCAAGGGCAGATGCAGACCCAGGCACCCCAGCCAGCCCAGGTGGCCTTGGCGAAGCCTCCGGTGGTGTCCGTCCCGGCAGCTGTGGTCTCCTCACCGGGAGTCACCACCCTGCCCATGAACGTCGCGGGGATCAGCGTGGCGATCGGTCAGCCACAGAAGGCAGCAGGACAGACCGTGGTGGCCCAGCCCGTGCACATGCAGCAGCTGCTGAAGCTGAAGCAGCAGGCCGTCCAGCAGCAGAAGGCCATCCAGCCCCAGGCTGCACAGGGCCCGGCAGCCGTCCAGCAGAAGATCACCGCACAGCAGATCACCACCCCTGGCGCGCAGCAGAAGGTTGCCTACGCCGCGCAGCCGGCCCTTAAGACCCAGTTTCTTACCACACCCATCTCCCAGGCCCAGAAACTGGCCGGGGCCCAGCAAGTGCAGACCCAGATCCAGGTTGCAAAACTTCCTCAAGTTGTTCAACAGCAAACACCCGTGGCCAGCATCCAGCAAGTTGCCTCTGCTTCCCAGCAGGCTTCTCCACAGACTGTGGCGCTCACGCAGGCGACGGCGGCCGGGCAGCAGGTGCAGATGATCCCTGCAGTGACCGCGACTGCCCAGGTGGTTCAGCAGAAACTCATTCAGCAGCAGGTGGTGACCACGGCGTCGGCCCCGCTCCAGACTCCAGGCGCTCCCAACCCAGCCCAGGTGCCCGCCAGCTCCGACAGCCCAAGCCAGCAGCCCAAGTTACAGATGAGGGTCCCTGCTGTCAGGCTAAAGACACCTACTAAGCCTCCGTGCCAGTAG MYGASGGRAKPERKSGAKEEAGPGGAGGGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQRE*KQPSSPYEPDLCPG*ECHTHPAVHEPL*LNENDCWQEESPNQTSAWHESLSEEPQARVCVGRKWNQL*QAAASHPGGISPCRANRKREKGSG*SAEGTAAGRGPATPAPAAAPTTPAAATATAATTTGSGQPAASRATSCPAPTPATAPDPATACAGPSEGAARNHDGGQCSRTGRNH*NISYWDEHAHWCREWKCDREHHRRGPSCHLPVHQQAPGVASGSWGLDYAGRLCSRPGGAHPAPATGSRLPSHGDP*PGVHGNDSGCSSGHFCDSLGRGHYQPDPSADPGTVFGAPSVPSHRSSAPWKNHHTCTFPASQAAAAAAATTAAAAAAAAAAAAAATAAAATDDDDLSGASSTDPGPGPVPSTDQSCGQADAGTPHQNAEAETADAPAAPTATGPVCAPAANSPSASADLAAAAAAEPPAHDGHGPKAWCPADGHHRGQPPGGPAHPGSHFSAAGARADADPGTPASPGGLGEASGGVRPGSCGLLTGSHHPAHERRGDQRGDRSATEGSRTDRGGPARAHAAAAEAEAAGRPAAEGHPAPGCTGPGSRPAEDHRTADHHPWRAAEGCLRRAAGP*DPVSYHTHLPGPETGRGPASADPDPGCKTSSSCSTANTRGQHPASCLCFPAGFSTDCGAHAGDGGRAAGADDPCSDRDCPGGSAETHSAAGGDHGVGPAPDSRRSQPSPGARQLRQPKPAAQVTDEGPCCQAKDTY*ASVPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30652 ACACA::MYO1D ENSG00000278540.5::ENSG00000176658.17 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1195 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37406262:- chr17:35441927-35766927:- chr17:35766352:- MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32659338:- chr17:30819540-31204195:- chr17:30986356:- chr17:37361482,chr17:37361482,chr17:37361482 chr17:32669815,chr17:32669816,chr17:32669817 NA NA chr17:35718425,chr17:35718425,chr17:35718425 chr17:30996833,chr17:30996834,chr17:30996835 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CtsR_C|18-29|0.44 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:4.21Mb] 20 6 20 6 ONLY_REF_SPLICE YES_LDAS 0.3433 GT 1.9329 AG 1.6402 ENST00000617548.1 1-38 ENST00000394649.8 1858-2757 chr17|-|[1]37406262-37406299[0]<==>chr17|-|[2]32494759-32494915[2]|[1]32605087-32605241[0]|[2]32638722-32638835[0]|[2]32653843-32653947[0]|[2]32654477-32654621[2]|[1]32659115-32659338[0] atgtggtggtctactctgatgtcaatcttgagggctagGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCGCTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTGGCCAAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCATTCCGGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGCCTGGGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGACAAATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCTGCACGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAGCGTGCCCGGGAACTGA MWWSTLMSILRARCGGAPWPACGTKEPRQL*Q*SGTTGATK*SRTSTRWPDASMASRPCETTGST*SGQALLKFFAVLRRPCRRFSIDGEHPSSSRAFRPQTCPRSGQRLQPWKC*RVKGLTSGSRGPGRATILLQSQIHLRPQALLSLLLMN*NGRTNT*MSSFPVTSVR*IDLVRWKTEQFLSLTVTCIKWIPLNSTR**RLSLYTI*LV*VSPMERTNL*CSIRKTTKTSLSASSANSQPMRVELENLLECW*IISRVRSATFK*TSPTQYSAACTGRSAPSPWRRGSTSPSPTSPRIARASSSACPGT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30654 ORC4::HOOK3 ENSG00000115947.14::ENSG00000168172.9 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1191 TRUE 2122 TRUE 812 ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:148020633:- chr2:148687965-148779173:- chr2:148778202:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43007847:+ chr8:42752089-42885678:+ chr8:42862990:+ chr2:147983858,chr2:147983863 chr8:43002614,chr8:43002609 NA NA chr2:148741427,chr2:148741432 chr8:42857757,chr8:42857752 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HOOK3:Oncogene"];["DepMap2023"];INTERCHROMOSOMAL[chr2--chr8] 15 5 15 2.88 ONLY_REF_SPLICE YES_LDAS 0.2361 GT 1.6895 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 30658 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE FALSE FALSE NA TRUE 4807 TRUE 1797 ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 75 10 8.15 ONLY_REF_SPLICE YES_LDAS 0.2396 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30659 SNRPD1::NDC80 ENSG00000167088.11::ENSG00000080986.13 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1196 FALSE NA FALSE NA SNRPD1 ENSG00000167088.11 protein_coding + + chr18:21612314-21633524:+ chr18:21623939:+ chr18:19192275-19213485:+ chr18:19203900:+ NDC80 ENSG00000080986.13 protein_coding + + chr18:2571557-2616635:+ chr18:2606415:+ chr18:2571556-2616634:+ chr18:2606414:+ chr18:21627590,chr18:21627590 chr18:2606346,chr18:2606343 NA NA chr18:19207551,chr18:19207551 chr18:2606345,chr18:2606342 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Gemin7|2-37|2.3e-06^LSM|5-69|1.2e-22^SM-ATX|5-51|2.8e-05^Hfq|11-33|8e-06^API5|92-114|0.00015 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:19.00Mb] 10 13 10 13 ONLY_REF_SPLICE YES_LDAS 0.3037 GT 1.5628 AG 1.7819 ENST00000300413.10 1-283 ENST00000261597.9 1465-1929 chr18|+|[0]21612430-21612443[1]|[2]21622725-21622801[0]|[1]21623748-21623939[0]<==>chr18|+|[0]2606415-2606507[2]|[0]2608700-2608830[1]|[2]2610759-2610861[2]|[0]2616437-2616574[2] atgaagctcgtgagatttttgatgaaattgagtcatgaaactgtaaccattgaattgaagaacggaacacaggtccatggaacaatcacaggtgtggatgtcagcatgaatacacatcttaaagctgtgaaaatgaccctgaagaacagagaacctgtacagctggaaacgctgagtattcgaggaaataacattcggtattttattctaccagacagtttacctctggatacactacttgtggatgttgaacctaaggtgaaatctaagaaaagggaagctgTTGAATGCAATGATAACAGAAAGCAAGAGAAGTGTGAGAACTCTGAAAGAAGAAGTTCAAAAGCTGGATGATCTTTACCAACAAAAAATTAAGGAAGCAGAGGAAGAGGATGAAAAATGTGCCAGTGAGCTTGAGTCCTTGGAGAAACACAAGCACCTGCTAGAAAGTACTGTTAACCAGGGGCTCAGTGAAGCTATGAATGAATTAGATGCTGTTCAGCGGGAATACCAACTAGTTGTGCAAACCACGACTGAAGAAAGACGAAAAGTGGGAAATAACTTGCAACGTCTGTTAGAGATGGTTGCTACACATGTTGGGTCTGTAGAGAAACATCTTGAGGAGCAGATTGCTAAAGTTGATAGAGAATATGAAGAATGCATGTCAGAAGATCTCTCGGAAAATATTAAAGAGATTAGAGATAAGTATGAGAAGAAAGCTACTCTAATTAAGTCTTCTGAAGAATGA MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVECNDNRKQEKCENSERRSSKAG*SLPTKN*GSRGRG*KMCQ*A*VLGETQAPARKYC*PGAQ*SYE*IRCCSAGIPTSCANHD*RKTKSGK*LATSVRDGCYTCWVCRETS*GADC*S**RI*RMHVRRSLGKY*RD*R*V*EESYSN*VF*RM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30660 GOSR2::EYA2 ENSG00000108433.17::ENSG00000064655.19 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1197 FALSE NA FALSE NA GOSR2 ENSG00000108433.17 protein_coding + + chr17:46923075-46975524:+ chr17:46938704:+ chr17:45000441-45052890:+ chr17:45016070:+ EYA2 ENSG00000064655.19 protein_coding + + chr20:46894624-47188844:+ chr20:47179798:+ chr20:45523263-45817492:+ chr20:45808446:+ chr17:46946453,chr17:46946304,chr17:46946451 chr20:47177289,chr20:47176833,chr20:47177284 NA NA chr17:45023819,chr17:45023670,chr17:45023817 chr20:45805937,chr20:45805481,chr20:45805932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GIT1_C|2-97|0.00024^V-SNARE_C|5-20|1.4^CYP38_PsbQ-like|10-97|0.00043^Sec20|13-30|0.7^HEF_HK|13-14|5.5^V-SNARE|14-85|1.2e-05^HEF_HK|29-88|0.00031^Endonuc-dimeris|43-52|0.24^SLX9|53-131|1.3e-05^Endonuc-dimeris|93-117|0.00041^V-SNARE_C|98-119|0.97^GIT1_C|123-140|4^V-SNARE_C|124-185|4e-16^Sec20|125-194|8.1e-06^HEF_HK|125-140|0.21^CYP38_PsbQ-like|159-185|1.2 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 10 18 10 18 ONLY_REF_SPLICE YES_LDAS 0.3697 GT 1.7819 AG 1.9656 ENST00000640792.1 1-583 ENST00000611592.4 1109-1527 chr17|+|[0]46923193-46923221[1]|[2]46929520-46929584[0]|[1]46931099-46931207[1]|[2]46932067-46932199[2]|[0]46935029-46935169[2]|[0]46938599-46938704[0]<==>chr20|+|[1]47179798-47179912[1]|[2]47180815-47180936[0]|[1]47183291-47183391[2]|[0]47188053-47188133[2] atggatcccctgttccagcaaacgcacaagcaggtccacgagatccagtcttgcatgggacgcctggagacggcagacaagcagtctgtgcacatagtagaaaacgaaatccaagcaagcatagaccagatattcagccgtctagaacgtctggagattttgtccagcaaggagccccctaacaaaaggcaaaatgccagacttcgggttgaccagttaaagtatgatgtccagcacctgcagactgcgctcagaaacttccagcatcggcgccatgcaagggagcagcaggagagacagcgagaagagcttctgtctcgaaccttcaccactaacgactctgacaccaccataccaatggacgaatcactgcagtttaactcctccctccagaaagttcacaacggcatggatgacctcattttagatgggcacaatattttagatggactgaggacccagagactgaccttgaaggggactcagaagaagatccttgacattgccaacatgctgggcttgtccaacacagtgatgcggctcatcgagaagcgggctttccaggacaagtactttatgatagGGTTGATAGGCACTCCCAAAAGGGAGACCTGGCTACAGCTCCGAGCTGAGCTGGAAGCTCTCACAGACCTCTGGCTGACCCACTCCCTGAAGGCACTAAACCTCATCAACTCCCGGCCCAACTGTGTCAATGTGCTGGTCACCACCACTCAACTAATTCCTGCCCTGGCCAAAGTCCTGCTATATGGCCTGGGGTCTGTGTTTCCTATTGAGAACATCTACAGTGCAACCAAGACAGGGAAGGAGAGCTGCTTCGAGAGGATAATGCAGAGATTCGGCAGAAAAGCTGTCTACGTGGTGATCGGTGATGGTGTGGAAGAGGAGCAAGGAGCGAAAAAGCACAACATGCCTTTCTGGCGGATATCCTGCCACGCAGACCTGGAGGCACTGAGGCACGCCCTGGAGCTGGAGTATTTATAG MDPLFQQTHKQVHEIQSCMGRLETADKQSVHIVENEIQASIDQIFSRLERLEILSSKEPPNKRQNARLRVDQLKYDVQHLQTALRNFQHRRHAREQQERQREELLSRTFTTNDSDTTIPMDESLQFNSSLQKVHNGMDDLILDGHNILDGLRTQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYFMIGLIGTPKRETWLQLRAELEALTDLWLTHSLKALNLINSRPNCVNVLVTTTQLIPALAKVLLYGLGSVFPIENIYSATKTGKESCFERIMQRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELEYL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30661 TADA2A::LINC00910 ENSG00000276234.5::ENSG00000188825.16 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TADA2A ENSG00000276234.5 protein_coding + + chr17:37406886-37479725:+ chr17:37411390:+ chr17:35766977-35839830:+ chr17:35771477:+ LINC00910 ENSG00000188825.16 lncRNA - - chr17:43338741-43389226:- chr17:43341459:- chr17:41416109-41466594:- chr17:41418827:- chr17:37436538,chr17:37436547,chr17:37436492,chr17:37436504,chr17:37436507,chr17:37436525,chr17:37436532,chr17:37436535,chr17:37436537 chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429,chr17:43342429 NA NA chr17:35796639,chr17:35796648,chr17:35796593,chr17:35796605,chr17:35796608,chr17:35796626,chr17:35796633,chr17:35796636,chr17:35796638 chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797,chr17:41419797 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr17:5.89Mb] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1848 GT 1.8892 AG 1.371 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30662 ENSG00000285517::DLG2 ENSG00000285517.1::ENSG00000150672.19 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1194 FALSE NA FALSE NA ENSG00000285517 ENSG00000285517.1 lncRNA + + chr12:30795458-30879268:+ chr12:30796216:+ chr12:30948392-31032202:+ chr12:30949150:+ DLG2 ENSG00000150672.19 protein_coding - - chr11:83455012-85628335:- chr11:84534731:- chr11:83166055-85339379:- chr11:84245774:- chr12:30796959,chr12:30796960 chr11:84863553,chr11:84863552 NA NA chr12:30949893,chr12:30949894 chr11:84574597,chr11:84574596 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 4 8 4 ONLY_REF_SPLICE YES_LDAS 0.1584 GT 1.7465 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30666 ORC4::HOOK3 ENSG00000115947.14::ENSG00000168172.9 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE TRUE 1192 TRUE 2122 TRUE 812 ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:148020608:- chr2:148687965-148779173:- chr2:148778177:- HOOK3 ENSG00000168172.9 protein_coding + + chr8:42896946-43030535:+ chr8:43007847:+ chr8:42752089-42885678:+ chr8:42862990:+ chr2:147983858,chr2:147983863 chr8:43002614,chr8:43002609 NA NA chr2:148741427,chr2:148741432 chr8:42857757,chr8:42857752 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HOOK3:Oncogene"];["DepMap2023"];INTERCHROMOSOMAL[chr2--chr8] 6 10 6 7.12 ONLY_REF_SPLICE YES_LDAS 0.1732 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE hook homolog 3 1 papillary thyroid epithelial fusion translocation 30667 THADA::ENSG00000285548 ENSG00000115970.19::ENSG00000285548.1 SH10TC SRR8615744 SRR8670754 STOMACH carcinoma primary star-fusion TRUE TRUE FALSE NA TRUE 4808 TRUE 1798 THADA ENSG00000115970.19 protein_coding - - chr2:43230851-43596038:- chr2:43320446:- chr2:43457990-43823177:- chr2:43547585:- ENSG00000285548 ENSG00000285548.1 lncRNA + + chr2:50324643-50345598:+ chr2:50335914:+ chr2:50551781-50572736:+ chr2:50563052:+ chr2:43318595,chr2:43318598 chr2:50330651,chr2:50330648 NA NA chr2:43545734,chr2:43545737 chr2:50557789,chr2:50557786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["THADA:Oncogene"] 5 17 5 2.58 INCL_NON_REF_SPLICE YES_LDAS 0.1001 GT 1.5656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30674 PAMR1::SLC1A2 ENSG00000149090.13::ENSG00000110436.13 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1198 TRUE 2133 TRUE 816 PAMR1 ENSG00000149090.13 protein_coding - - chr11:35431823-35530300:- chr11:35525513:- chr11:35453370-35551848:- chr11:35547061:- SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35292520:- chr11:35272752-35441610:- chr11:35314067:- chr11:35504747,chr11:35504756 chr11:35294848,chr11:35294854 NA NA chr11:35526295,chr11:35526304 chr11:35316395,chr11:35316401 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame hEGF|52-56|3 none ["GUO2018CR_TCGA","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];NEIGHBORS[11760] 41 20 41 17.59 ONLY_REF_SPLICE YES_LDAS 0.6398 GT 1.9656 AG 1.8062 ENST00000622144.4 1-73 ENST00000643134.1 858-1749 chr11|-|[0]35525513-35525585[0]<==>chr11|-|[2]35260857-35260952[0]|[2]35265527-35265758[2]|[1]35280867-35281001[2]|[1]35286757-35286951[2]|[1]35292287-35292520[2] atggagctgggttgctggacgcagttggggctcacttttcttcagctccttctcatctcgtccttgccaagagGTACTCTCCCCTGGGTATCGCCTGCCTGATCTGTGGAAAGATCATTGCAATCAAGGACTTAGAAGTGGTTGCTAGGCAACTGGGGATGTACATGGTAACAGTGATCATAGGCCTCATCATCCACGGGGGCATCTTTCTCCCCTTGATTTACTTTGTAGTGACCAGGAAAAACCCCTTCTCCTTTTTTGCTGGCATTTTCCAAGCTTGGATCACTGCCCTGGGCACCGCTTCCAGTGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAGCCTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCATGCTCCTCATTCTGACAGCCGTGGGCCTGCCAACAGAGGACATCAGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAGGATGAGAACTTCAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTATCACCTCTCCAAGTCTGAGCTGGATACCATTGACTCCCAGCATCGAGTGCATGAAGATATTGAAATGACCAAGACTCAATCCATTTATGATGACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATGCTGCACACAACTCTGTCATAGTAGATGAATGCAAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCTTGGAAACGTGAGAAATAAGGATATGAGTCTCAGCAAATTCTTGAATAAACTCCCC MELGCWTQLGLTFLQLLLISSLPRGTLPWVSPA*SVERSLQSRT*KWLLGNWGCTW*Q*S*ASSSTGASFSP*FTL**PGKTPSPFLLAFSKLGSLPWAPLPVLELCLSPFVAWKKIWGLISV*LDSSFLLEQPLTWMVQPFMKR*PPSL*PK*MVLSWMEDRL*L*ASQPPWQASARPVSPVPGWSPCSSF*QPWACQQRTSACWWLWTGCWTG*ELQSMLWVTLLGLG*SITSPSLSWIPLTPSIECMKILK*PRLNPFMMT*RTTGKATLINVSMLHTTLS**MNASQWKVSRLQC*GRTLET*EIRI*VSANS*INS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30677 PAMR1::SLC1A2 ENSG00000149090.13::ENSG00000110436.13 SF295 SRR8615745 SRR8670755 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1199 TRUE 2133 TRUE 816 PAMR1 ENSG00000149090.13 protein_coding - - chr11:35431823-35530300:- chr11:35525513:- chr11:35453370-35551848:- chr11:35547061:- SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35286951:- chr11:35272752-35441610:- chr11:35308498:- chr11:35504747,chr11:35504756 chr11:35294848,chr11:35294854 NA NA chr11:35526295,chr11:35526304 chr11:35316395,chr11:35316401 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame hEGF|52-56|3 none ["GUO2018CR_TCGA","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];NEIGHBORS[11760] 14 11 14 2.41 ONLY_REF_SPLICE YES_LDAS 0.1792 GT 1.9656 AG 1.9329 ENST00000622144.4 1-73 ENST00000643134.1 1092-1749 chr11|-|[0]35525513-35525585[0]<==>chr11|-|[2]35260857-35260952[0]|[2]35265527-35265758[2]|[1]35280867-35281001[2]|[1]35286757-35286951[2] atggagctgggttgctggacgcagttggggctcacttttcttcagctccttctcatctcgtccttgccaagagTGCTGGAACTTTGCCTGTCACCTTTCGTTGCCTGGAAGAAAATCTGGGGATTGATAAGCGTGTGACTAGATTCGTCCTTCCTGTTGGAGCAACCATTAACATGGATGGTACAGCCCTTTATGAAGCGGTAGCCGCCATCTTTATAGCCCAAATGAATGGTGTTGTCCTGGATGGAGGACAGATTGTGACTGTAAGCCTCACAGCCACCCTGGCAAGCGTCGGCGCGGCCAGTATCCCCAGTGCCGGGCTGGTCACCATGCTCCTCATTCTGACAGCCGTGGGCCTGCCAACAGAGGACATCAGCCTGCTGGTGGCTGTGGACTGGCTGCTGGACAGGATGAGAACTTCAGTCAATGTTGTGGGTGACTCTTTTGGGGCTGGGATAGTCTATCACCTCTCCAAGTCTGAGCTGGATACCATTGACTCCCAGCATCGAGTGCATGAAGATATTGAAATGACCAAGACTCAATCCATTTATGATGACATGAAGAACCACAGGGAAAGCAACTCTAATCAATGTGTCTATGCTGCACACAACTCTGTCATAGTAGATGAATGCAAGCCAATGGAAAGTCAGCCGACTGCAGTGTTGAGGAAGAACCTTGGAAACGTGAGAAATAAGGATATGAGTCTCAGCAAATTCTTGAATAAACTCCCC MELGCWTQLGLTFLQLLLISSLPRVLELCLSPFVAWKKIWGLISV*LDSSFLLEQPLTWMVQPFMKR*PPSL*PK*MVLSWMEDRL*L*ASQPPWQASARPVSPVPGWSPCSSF*QPWACQQRTSACWWLWTGCWTG*ELQSMLWVTLLGLG*SITSPSLSWIPLTPSIECMKILK*PRLNPFMMT*RTTGKATLINVSMLHTTLS**MNASQWKVSRLQC*GRTLET*EIRI*VSANS*INS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain inexact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30688 DMTN::ACTE1P ENSG00000158856.19::ENSG00000172900.12 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DMTN ENSG00000158856.19 protein_coding + + chr8:22048995-22082527:+ chr8:22067682:+ chr8:21906506-21940038:+ chr8:21925193:+ ACTE1P ENSG00000172900.12 transcribed_unitary_pseudogene - - chr11:71382601-71423423:- chr11:71393958:- chr11:71093647-71134469:- chr11:71105004:- chr8:22068118,chr8:22068117,chr8:22068118,chr8:22068117 chr11:71395009,chr11:71395009,chr11:71395005,chr11:71395010 NA NA chr8:21925629,chr8:21925628,chr8:21925629,chr8:21925628 chr11:71106055,chr11:71106055,chr11:71106051,chr11:71106056 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 22 19 22 ONLY_REF_SPLICE YES_LDAS 0.5911 GT 1.6895 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30698 EFR3A::ANK1 ENSG00000132294.15::ENSG00000029534.22 MDAMB134VI SRR8615755 SRR8652104 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1203 FALSE NA FALSE NA EFR3A ENSG00000132294.15 protein_coding + + chr8:131904093-132013642:+ chr8:131950090:+ chr8:132916340-133025889:+ chr8:132962337:+ ANK1 ENSG00000029534.22 protein_coding - - chr8:41653220-41896741:- chr8:41758137:- chr8:41510739-41754259:- chr8:41615655:- chr8:131951614,chr8:131951615 chr8:41797538,chr8:41797537 NA NA chr8:132963861,chr8:132963862 chr8:41655056,chr8:41655055 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EFR3|64-136|8.3e-11^EFR3_ARM|75-171|1.2e-44^EFR3_ARM|505-525|1.5 Ank-PARTIAL|~127-131|0.00012^Ank_4-PARTIAL|~127-154|1.5e-07^Ank_2-PARTIAL|~127-172|6.4e-16^Ank_3-PARTIAL|~127-131|0.042^Ank_5-PARTIAL|~127-130|0.0026^Ank_5|132-172|1.2e-08^PK_C|138-195|0.28^Ank|143-172|2.3e-11^Ank_3|143-171|2.1e-08^Ank_4|144-196|2e-15^Ank_5|162-216|6.3e-13^Ank_2|166-234|1.1e-17^PK_C|172-231|0.59^Ank|176-205|4.5e-11^Ank_3|176-203|1.2e-07^Ank_4|178-225|1.6e-11^Ank|208-232|0.00013^Ank_3|208-233|0.0086^Ank_4|239-291|1.5e-12^Ank_2|240-299|4e-13^Ank_3|240-265|0.004^Ank|241-266|0.0002^Ank_5|241-249|7.8^Ank_5|257-298|3.7e-09^PK_C|266-312|0.57^Ank|271-298|7.5e-11^Ank_3|271-298|1.2e-07^Ank_4|281-324|5.4e-10^Ank_5|290-342|7.1e-12^Ank_2|295-366|6.6e-17^Ank|303-334|5.3e-10^Ank_3|303-331|6.3e-08^Ank_4|319-357|5.5e-09^Ank_5|331-374|2.2e-07^Ank_4|337-390|5e-14^Ank|338-368|1e-09^Ank_3|338-364|2.8e-06^Ank_5|356-396|3.5e-08^Ank_2|365-432|1.2e-17^Ank|369-398|4.6e-09^Ank_3|369-397|1.3e-05^Ank_4|371-423|2.1e-14^Ank|403-432|3.7e-10^Ank_4|403-456|2.5e-14^Ank_3|403-430|2.3e-07^Ank_5|403-430|1.3e-05^Ank_2|407-498|4e-23^Ank_5|422-476|5.7e-14^Xre_MbcA_ParS_C|432-442|7.6^Ank|435-466|1.1e-11^Ank_3|435-464|2.8e-08^Ank_4|438-488|6.1e-15^Ank_5|455-505|5.7e-08^PK_C|462-485|0.028^Ank|469-499|6.1e-11^Ank_3|469-497|3.1e-07^Ank_4|470-522|4e-15^Ank_5|488-535|3.1e-09^Ank_2|503-563|2.1e-18^Ank_3|503-530|4.8e-08^Ank|504-531|6.1e-11^Ank_4|504-555|7.5e-18^Ank_5|528-575|1.2e-10^Ank|534-564|7.3e-12^Ank_3|535-562|1e-08^Ank_4|546-588|2.4e-09^Ank_2|559-629|2.3e-17^Xre_MbcA_ParS_C|560-590|0.005^PK_C|564-609|0.37^Ank|568-593|2.1e-08^Ank_3|568-592|4.2e-06^Ank_4|569-621|4.9e-12^Ank_5|587-638|8.6e-12^Ank_2|597-658|4.4e-16^Ank|601-630|4.8e-10^Ank_3|601-629|3.5e-07^Ank_4|603-654|1.9e-15^Ank_5|628-655|2.3e-07^Ank|633-661|4.1e-10^Ank_3|633-660|1.1e-07^Ank_2|638-727|4.9e-23^Ank|666-695|3.9e-09^Ank_3|666-694|2.5e-07^Ank_5|666-698|1e-07^Ank_4|668-720|9.2e-12^Ank_5|686-739|9.8e-11^PK_C|693-719|1.6^Xre_MbcA_ParS_C|699-722|0.21^Ank|700-730|6.7e-10^Ank_3|700-727|8.9e-06^Ank_4|701-753|4.1e-11^Ank_2|704-795|1.9e-24^Ank_5|724-773|1.9e-10^Ank|733-763|7e-08^Ank_3|733-757|2.7e-05^Ank_4|734-786|4.2e-12^Ank_5|752-797|6.3e-10^PK_C|762-818|1.2^Ank|766-797|1.5e-12^Ank_3|766-794|6.7e-10^Ank_4|767-819|4.9e-16^Ank_5|785-839|7.9e-14^Ank_2|792-851|7.8e-12^Ank|799-828|9.6e-11^Ank_3|799-826|1.1e-07^Ank_4|800-839|1.7e-10^Ank|831-851|0.49^ZU5|988-1085|9.5e-32^ZU5|1148-1224|6.5e-07^UPA_2|1309-1437|3.2e-62^Death|1478-1557|2.1e-23 ["Klijn_CellLines","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:90.01Mb] 5 3 5 2.78 ONLY_REF_SPLICE YES_LDAS 0.1122 GT 1.5546 AG 1.8892 ENST00000637848.1 1-569 ENST00000705521.1 127-5862 chr8|+|[0]131938225-131938315[0]|[1]131940499-131940575[2]|[0]131944745-131944872[1]|[2]131946483-131946633[2]|[0]131949969-131950090[1]<==>chr8|-|[2]41661466-41661564[0]|[2]41661876-41661941[0]|[2]41663659-41663742[0]|[2]41668267-41668564[2]|[1]41672354-41672912[1]|[0]41684544-41684690[1]|[0]41686152-41686283[1]|[0]41688156-41688230[1]|[0]41688511-41688589[0]|[2]41690227-41690346[0]|[2]41690474-41690599[0]|[2]41692648-41692876[2]|[1]41693105-41693201[1]|[0]41693898-41694102[0]|[2]41694592-41694803[1]|[0]41695177-41695331[2]|[1]41696363-41696587[2]|[1]41696676-41696773[0]|[2]41698043-41698121[2]|[1]41699452-41699548[1]|[0]41700431-41700454[1]|[0]41701550-41701622[0]|[2]41702052-41702144[0]|[2]41704041-41704139[0]|[2]41704374-41704472[0]|[2]41706143-41706241[0]|[2]41708778-41708975[0]|[2]41714156-41714254[0]|[2]41714976-41715074[0]|[2]41715652-41715849[0]|[2]41716953-41717051[0]|[2]41717604-41717702[0]|[2]41718106-41718204[0]|[2]41719661-41719858[0]|[2]41723125-41723223[0]|[2]41723535-41723633[0]|[2]41724456-41724554[0]|[2]41725761-41725946[0]|[2]41727250-41727348[0]|[2]41727908-41728006[0]|[2]41733971-41734069[0]|[2]41746642-41746737[0]|[2]41758036-41758137[0] atgaaggactatgttcaggtacctgcagctgaactcgaaaagccttatgaatttacttcaacaagggagtcacctacatttctatacttgagagtatgctgctgctgttccgctttgcgtcctcgctacaaacgcctggtggacaacatattccctgaagatccaaaagatggccttgtgaaaactgatatggagaaattgacattttatgcagtatctgctccagagaaactggatcgaattggttcttacctggcagaaaggttgagcagggatgttgtcagacatcgttctgggtatgttttgattgctatggaggcactggaccaacttctcatggcttgccattctcaaagcattaagccatttgtagaaagctttcttcatatggtggcaaagctgctggaatcgggggaaccaaagcttcaagttcttggaacaaattcttttgtcaaatttgcaaatattgaagaagacacaccatcctatcacagacgttatgacttttttgtgtctcgattcagtgccatgtgccattcctgtcatagtgatccagaaatacgaacagaGCCGATGCTGCTACCAGCTTTCTGAGAGCAGCAAGATCAGGTAACTTGGACAAAGCTTTGGATCACCTGCGGAATGGGGTAGATATTAACACCTGTAACCAGGGCCCATCAGCCTCTGCAGTTGATTTGCTGCTGAGATGCAGGATTTCTCAGAGCACAGGGCTGCTGCGAGTTCTGTACAATCAAAATAGAAAGAAGAATGGGTTGAATGGCTTGCATCTGGCTTCTAAGGAAGGCCATGTGAAAATGGTGGTTGAACTTCTGCACAAAGAAATCATTCTAGAAACGACAACCAAGAAGGGGAACACGGCCCTGCACATCGCTGCTCTAGCCGGGCAGGATGAGGTGGTCCGGGAGCTTGTCAACTATGGAGCCAACGTCAACGCCCAGTCACAGAAAGGTTTTACACCCCTGTACATGGCAGCACAAGAGAACCACTTGGAAGTGGTTAAGTTTTTACTGGAAAATGGAGCTAACCAGAATGTAGCCACAGAAGACGGCTTCACGCCTCTGGCGGTAGCCCTGCAGCAGGGCCATGAGAACGTCGTCGCGCACCTCATCAACTACGGCACCAAGGGGAAGGTGCGCCTCCCGGCCCTGCACATCGCGGCCCGCAACGACGACACGCGCACGGCTGCGGTGCTGCTGCAGAACGACCCCAACCCGGACGTGCTTTCCAAGACGGGATTCACGCCCCTGCACATTGCGGCTCACTACGAGAACCTCAACGTGGCCCAGTTGCTCCTCAACAGAGGAGCCAGCGTCAATTTCACACCACAGAACGGCATCACGCCACTGCACATCGCCTCCCGCAGGGGCAACGTGATCATGGTGCGGCTGCTGCTGGATCGGGGAGCCCAGATAGAAACCAAGACCAAGGACGAATTGACACCTCTCCACTGTGCAGCTCGAAATGGGCACGTGCGAATCTCAGAGATCCTGCTGGACCACGGGGCACCAATCCAAGCCAAAACCAAGAACGGCCTGTCCCCAATTCACATGGCGGCTCAGGGAGACCACCTCGACTGTGTCCGGCTCCTGTTGCAATACGACGCAGAGATAGACGACATCACCCTGGACCACCTGACCCCACTCCACGTGGCTGCCCACTGTGGACACCACAGGGTGGCTAAGGTCCTTCTGGATAAAGGGGCCAAACCCAACTCCAGAGCCCTGAATGGCTTTACCCCCTTACACATCGCCTGCAAAAAGAACCACGTCCGTGTCATGGAGCTGCTGCTGAAGACGGGAGCCTCGATCGACGCGGTCACCGAGTCTGGCCTGACACCTCTCCACGTGGCCTCCTTCATGGGGCACCTTCCCATCGTGAAGAACCTCCTGCAGCGGGGGGCGTCGCCCAACGTCTCCAACGTGAAAGTGGAGACCCCGCTACACATGGCAGCCAGAGCCGGGCACACGGAAGTGGCCAAATATTTACTCCAGAACAAAGCCAAAGTCAATGCCAAGGCCAAGGATGACCAGACCCCACTTCACTGTGCAGCTCGCATCGGCCACACAAACATGGTGAAGCTCCTGCTGGAAAATAACGCCAACCCCAACCTGGCCACCACCGCCGGGCACACCCCCCTGCACATTGCAGCCCGTGAGGGCCATGTGGAAACAGTCCTGGCCCTTCTGGAAAAGGAAGCATCCCAGGCCTGCATGACCAAGAAAGGATTTACCCCTCTGCACGTGGCGGCCAAGTACGGGAAGGTGCGGGTGGCAGAGCTGCTGCTGGAGCGGGACGCACACCCGAATGCTGCCGGAAAAAATGGCCTGACCCCCCTGCACGTGGCCGTCCATCACAACAACCTGGACATCGTCAAGCTGCTGCTTCCCCGGGGCGGCTCCCCGCACAGCCCTGCCTGGAATGGCTACACCCCTTTGCACATCGCTGCCAAGCAGAACCAGGTGGAGGTGGCCCGTAGTCTGCTGCAGTATGGGGGCTCAGCAAACGCCGAGTCGGTGCAAGGTGTGACGCCCCTTCACCTGGCCGCCCAGGAGGGCCACGCAGAGATGGTGGCTCTGCTGCTCTCGAAACAAGCCAATGGCAACCTGGGGAACAAGAGCGGACTCACTCCCCTCCATCTGGTAGCACAAGAAGGCCACGTTCCAGTGGCAGATGTGCTGATCAAACACGGCGTCATGGTGGACGCCACCACCCGGATGGGCTACACTCCCCTCCATGTGGCCAGTCACTATGGAAACATCAAGCTGGTGAAGTTTCTGCTGCAGCACCAGGCAGATGTCAATGCCAAGACCAAGCTAGGATACAGCCCCCTGCACCAGGCAGCCCAGCAGGGACACACAGACATCGTGACTCTGCTTCTGAAAAACGGTGCTTCCCCAAACGAGGTCAGCTCGGATGGAACCACACCTCTGGCCATAGCCAAGCGCTTGGGCTACATTTCTGTCACCGACGTGCTCAAGGTCGTCACGGATGAAACCAGTTTCGTGTTAGTCAGTGATAAGCATCGAATGAGTTTCCCTGAGACAGTTGATGAGATCCTGGATGTCTCGGAAGATGAAGGAACTGCTCATATAACTATAATGGGGGAAGAACTCATCAGCTTCAAGGCTGAGAGGCGGGATTCCAGGGATGTTGATGAAGAGAAGGAGCTGCTGGATTTTGTGCCGAAGCTAGACCAAGTGGTGGAATCTCCAGCCATCCCCAGGATTCCCTGTGCCATGCCTGAGACAGTGGTGATCAGGTCAGAAGAGCAGGAGCAGGCATCTAAAGAGTATGATGAGGACTCCCTCATCCCCAGCAGCCCGGCCACCGAGACCTCAGACAACATCAGCCCGGTGGCCAGCCCGGTGCATACAGGGTTTCTGGTGAGCTTCATGGTTGACGCCCGGGGTGGTTCCATGAGAGGAAGTCGCCACAACGGCCTGCGAGTGGTGATCCCGCCACGGACGTGCGCAGCGCCCACCCGCATCACCTGCCGCCTGGTCAAGCCCCAGAAGCTCAGCACGCCGCCCCCACTGGCCGAGGAGGAGGGCCTGGCCAGCAGGATCATAGCACTGGGGCCCACGGGGGCACAGTTCCTGAGCCCTGTAATCGTGGAGATCCCGCACTTTGCCTCCCATGGCCGTGGAGACCGCGAGCTCGTGGTTCTGAGGAGCGAAAACGGCTCCGTGTGGAAGGAGCACAGGAGCCGCTATGGAGAGAGCTACCTGGATCAGATCCTCAACGGGATGGACGAAGAGCTGGGGAGCCTGGAGGAGCTAGAGAAGAAGAGGGTGTGCCGAATCATCACCACCGACTTCCCGCTGTACTTCGTGATCATGTCACGGCTCTGCCAGGACTACGACACCATCGGTCCCGAAGGGGGCTCCCTGAAGAGCAAGCTGGTGCCCCTGGTACAGGCAACGTTCCCGGAGAATGCCGTCACCAAGAGAGTGAAGCTGGCTCTGCAGGCCCAGCCTGTCCCGGATGAGCTTGTCACTAAGCTCCTGGGCAACCAGGCCACATTCAGCCCCATTGTCACCGTGGAGCCCCGGCGCCGGAAGTTCCACCGCCCCATTGGGCTTCGGATCCCACTACCTCCTTCCTGGACCGACAACCCGAGGGACAGCGGGGAGGGAGACACCACCAGCCTGCGCCTGCTTTGCAGCGTCATTGGAGGAACAGACCAAGCCCAGTGGGAAGACATAACAGGAACCACCAAACTTGTATATGCCAACGAGTGCGCCAACTTCACCACCAATGTCTCTGCCAGGTTTTGGCTGTCGGACTGTCCTCGGACTGCTGAGGCTGTGAACTTTGCCACCCTGCTGTACAAAGAGCTCACTGCAGTGCCCTACATGGCCAAATTCGTCATCTTTGCCAAGATGAATGACCCCCGAGAGGGGCGCCTGCGCTGCTACTGCATGACAGATGATAAAGTGGACAAGACCCTGGAGCAGCATGAGAACTTCGTGGAGGTGGCCCGGAGCAGGGACATAGAGGTGTTGGAAGGAATGTCCCTGTTTGCAGAACTCTCTGGGAACCTGGTGCCTGTGAAGAAAGCTGCCCAGCAGCGGAGCTTCCACTTCCAGTCATTTCGGGAGAACCGTCTGGCCATGCCTGTAAAGGTGAGGGACAGCAGTCGAGAGCCGGGAGGGTCCCTGTCGTTTCTGCGCAAGGCGATGAAGTACGAGGACACCCAGCACATTCTCTGCCACCTGAACATCACCATGCCCCCCTGCGCCAAGGGAAGTGGAGCCGAAGATAGGAGAAGGACCCCGACGCCCCTGGCCCTGCGATACAGCATTCTCAGTGAGTCCACACCAGGTTCTCTCAGTGGGACAGAGCAGGCAGAGATGAAGATGGCTGTTATCTCAGAGCACCTCGGTCTCAGCTGGGCAGAGTTGGCCCGGGAGCTGCAGTTCAGTGTGGAAGACATCAACAGGATCCGAGTGGAAAATCCCAACTCCCTGTTGGAGCAGAGTGTGGCCTTGCTGAACCTCTGGGTCATCCGTGAAGGCCAAAACGCAAACATGGAGAATCTGTACACAGCCCTGCAGAGCATTGACCGTGGCGAGATCGTGAACATGCTGGAGGGTTCCGGCCGACAGAGCCGCAACTTGAAGCCAGACAGGCGGCACACCGACCGCGACTACTCGCTGTCACCCTCCCAGATGAATGGTTACTCCTCACTGCAGGACGAGCTGCTGTCCCCTGCCTCCCTGGGCTGTGCACTTTCCTCTCCGCTACGTGCAGACCAGTACTGGAATGAGGTGGCCGTCCTAGACGCCATCCCCTTGGCGGCCACGGAGCATGACACCATGCTGGAGATGTCTGACATGCAGGTGTGGTCTGCGGGCCTCACGCCTTCTCTGGTCACTGCTGAGGACTCCTCTCTGGAGTGTAGCAAGGCTGAGGACTCTGATGCCACAGGTCACGAGTGGAAGTTGGAGGGGGCACTCTCAGAGGAACCGCGGGGCCCCGAGTTGGGCTCTCTGGAACTTGTGGAGGACGACACAGTGGATTCAGATGCCACAAATGGCCTTATCGATTTGCTTGAACAGGAGGAAGGTCAGAGGTCAGAAGAGAAGCTGCCAGGTTCTAAGAGGCAGGATGACGCGACAGGTGCAGGGCAGGACTCAGAGAATGAAGTGTCTCTTGTTTCAGGCCATCAGAGGGGGCAAGCCCGAATCACACATTCCCCCACCGTGAGTCAGGTGACGGAGAGGAGTCAGGACAGACTGCAGGACTGGGATGCAGACGGCTCGATTGTCTCATACCTGCAAGATGCTGCACAAGGTTCCTGGCAAGAGGAGGTCACGCAAGGTCCACACTCATTCCAGGGAACAAGTACCATGACTGAAGGGCTAGAGCCCGGTGGATCTCAGGAGTACGAGAAGGTCCTGGTGTCTGTAAGTGAGCACACGTGGACAGAACAGCCCGAGGCTGAGAGCTCCCAGGCCGACAGGGACCGGAGGCAGCAAGGCCAAGAAGAGCAGGTGCAGGAGGCCAAGAACACCTTCACCCAAGTGGTGCAGGGGAATGAGTTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCAATTCACGGATGAGCAGGGCAACATTGTCACCAAGAAGATCATTCGCAAGGTGGTTCGACAGATAGACTTGTCCAGCGCCGATGCCGCCCAGGAGCACGAGGAGGTGGAGCTGAGAGGGAGTGGCCTACAGCCGGACCTGATAGAGGGCAGGAAGGGGGCGCAGATAGTGAAGCGGGCCAGCCTGAAAAGGGGGAAACAGTGA MKDYVQVPAAELEKPYEFTSTRESPTFLYLRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKTDMEKLTFYAVSAPEKLDRIGSYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEIRTEPMLLPAF*EQQDQVTWTKLWITCGMG*ILTPVTRAHQPLQLICC*DAGFLRAQGCCEFCTIKIERRMG*MACIWLLRKAM*KWWLNFCTKKSF*KRQPRRGTRPCTSLL*PGRMRWSGSLSTMEPTSTPSHRKVLHPCTWQHKRTTWKWLSFYWKMELTRM*PQKTASRLWR*PCSRAMRTSSRTSSTTAPRGRCASRPCTSRPATTTRARLRCCCRTTPTRTCFPRRDSRPCTLRLTTRTSTWPSCSSTEEPASISHHRTASRHCTSPPAGAT*SWCGCCWIGEPR*KPRPRTN*HLSTVQLEMGTCESQRSCWTTGHQSKPKPRTACPQFTWRLRETTSTVSGSCCNTTQR*TTSPWTT*PHSTWLPTVDTTGWLRSFWIKGPNPTPEP*MALPPYTSPAKRTTSVSWSCC*RREPRSTRSPSLA*HLSTWPPSWGTFPS*RTSCSGGRRPTSPT*KWRPRYTWQPEPGTRKWPNIYSRTKPKSMPRPRMTRPHFTVQLASATQTW*SSCWKITPTPTWPPPPGTPPCTLQPVRAMWKQSWPFWKRKHPRPA*PRKDLPLCTWRPSTGRCGWQSCCWSGTHTRMLPEKMA*PPCTWPSITTTWTSSSCCFPGAAPRTALPGMATPLCTSLPSRTRWRWPVVCCSMGAQQTPSRCKV*RPFTWPPRRATQRWWLCCSRNKPMATWGTRADSLPSIW*HKKATFQWQMC*SNTASWWTPPPGWATLPSMWPVTMETSSW*SFCCSTRQMSMPRPS*DTAPCTRQPSRDTQTS*LCF*KTVLPQTRSARMEPHLWP*PSAWATFLSPTCSRSSRMKPVSC*SVISIE*VSLRQLMRSWMSRKMKELLI*L*WGKNSSASRLRGGIPGMLMKRRSCWILCRS*TKWWNLQPSPGFPVPCLRQW*SGQKSRSRHLKSMMRTPSSPAARPPRPQTTSARWPARCIQGFW*ASWLTPGVVP*EEVATTACEW*SRHGRAQRPPASPAAWSSPRSSARRPHWPRRRAWPAGS*HWGPRGHSS*AL*SWRSRTLPPMAVETASSWF*GAKTAPCGRSTGAAMERATWIRSSTGWTKSWGAWRS*RRRGCAESSPPTSRCTS*SCHGSARTTTPSVPKGAP*RASWCPWYRQRSRRMPSPRE*SWLCRPSLSRMSLSLSSWATRPHSAPLSPWSPGAGSSTAPLGFGSHYLLPGPTTRGTAGRETPPACACFAASLEEQTKPSGKT*QEPPNLYMPTSAPTSPPMSLPGFGCRTVLGLLRL*TLPPCCTKSSLQCPTWPNSSSLPR*MTPERGACAATA*QMIKWTRPWSSMRTSWRWPGAGT*RCWKECPCLQNSLGTWCL*RKLPSSGASTSSHFGRTVWPCL*R*GTAVESREGPCRFCARR*STRTPSTFSAT*TSPCPPAPREVEPKIGEGPRRPWPCDTAFSVSPHQVLSVGQSRQR*RWLLSQSTSVSAGQSWPGSCSSVWKTSTGSEWKIPTPCWSRVWPC*TSGSSVKAKTQTWRICTQPCRALTVARS*TCWRVPADRAAT*SQTGGTPTATTRCHPPR*MVTPHCRTSCCPLPPWAVHFPLRYVQTSTGMRWPS*TPSPWRPRSMTPCWRCLTCRCGLRASRLLWSLLRTPLWSVARLRTLMPQVTSGSWRGHSQRNRGAPSWALWNLWRTTQWIQMPQMALSICLNRRKVRGQKRSCQVLRGRMTRQVQGRTQRMKCLLFQAIRGGKPESHIPPP*VR*RRGVRTDCRTGMQTARLSHTCKMLHKVPGKRRSRKVHTHSREQVP*LKG*SPVDLRSTRRSWCL*VSTRGQNSPRLRAPRPTGTGGSKAKKSRCRRPRTPSPKWCRGMSFRIFQGSR*QRSNSRMSRATLSPRRSFARWFDR*TCPAPMPPRSTRRWS*EGVAYSRT**RAGRGRR**SGPA*KGGNS FALSE FALSE NA NA TRUE hsa-mir-486-1 chr8:41660441-41660508:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ankyrin 1 2 CCRCC epithelial missense 30703 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1204 TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67528914:+ chr16:67552321-67580691:+ chr16:67562817:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 370 11 370 7.77 ONLY_REF_SPLICE YES_LDAS 4.5818 GT 1.7465 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30704 CTNNA1::MATR3 ENSG00000044115.21::ENSG00000015479.20 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CTNNA1 ENSG00000044115.21 protein_coding + + chr5:138610967-138935034:+ chr5:138827718:+ chr5:137946656-138270723:+ chr5:138163407:+ MATR3 ENSG00000015479.20 protein_coding + + chr5:139293674-139331677:+ chr5:139314675:+ chr5:138629363-138667366:+ chr5:138650364:+ chr5:138847623,chr5:138847622 chr5:139294035,chr5:139294031 NA NA chr5:138183312,chr5:138183311 chr5:138629724,chr5:138629720 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Vinculin|19-812|0^DUF2935|61-95|2.4^Rotamase|78-130|0.0028^Rotamase|233-279|0.0036^GIT1_C|246-290|1.2^Peptidase_C5|263-334|5.1e-05^GIT1_C|308-381|6.8e-05^DUF2935|328-403|0.0019^H-kinase_dim|341-381|0.0013^GIT1_C|404-469|0.0059^Rotamase|406-445|0.41^DUF2935|412-459|0.11^GIT1_C|587-625|0.6^H-kinase_dim|592-632|0.46^Rotamase|657-689|0.98^DUF2935|670-721|2.3^GIT1_C|737-760|1.3^Rotamase|743-775|2.7^H-kinase_dim|800-810|1.5 RRM_5|106-187|1e-06^RRM_1|126-164|7.8e-06^RRM_5|207-282|0.00044^RRM_1|212-264|3.3e-07^Utp14|286-477|1.1e-05^CCDC53|322-357|0.03^CCDC53|424-504|0.00064^zf-C2H2_jaz|513-538|0.00012^zf-U1|513-545|7.2e-05 ["CTNNA1:FoundationOne_panel","CTNNA1:ArcherDX_panel","CTNNA1:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.36Mb] 310 97 310 97 ONLY_REF_SPLICE YES_LDAS 4.9364 GT 1.9086 AG 1.9086 ENST00000518825.5 1-1062 ENST00000503811.5 49-1680 chr5|+|[0]138781925-138782029[2]|[0]138783177-138783372[0]|[1]138810038-138810204[2]|[0]138812183-138812302[2]|[0]138824530-138824799[2]|[0]138827515-138827718[2]<==>chr5|+|[0]139314675-139314736[1]|[2]139315697-139315738[1]|[2]139316076-139316188[0]|[1]139317053-139317105[2]|[0]139317596-139317721[2]|[0]139318908-139319033[2]|[0]139319334-139319501[2]|[0]139321898-139322029[2]|[0]139322463-139322506[1]|[2]139322598-139322967[2]|[0]139325440-139325662[0]|[1]139326163-139326284[2]|[0]139329345-139329395[2] atgactgctgtccatgcaggcaacataaacttcaagtgggatcctaaaagtctagagatcaggactctggcagttgagagactgttggagcctcttgttacacaggttacaacccttgtaaacaccaatagtaaagggccctctaataagaagagaggtcgttctaagaaggcccatgttttggctgcatctgttgaacaagcaactgagaatttcttggagaagggggataaaattgcgaaggagagccagtttctcaaggaggagcttgtggctgctgtagaagatgttcgaaaacaaggtgatttgatgaaggctgctgcaggagagttcgcagatgatccctgctcttctgtgaagcgaggcaacatggttcgggcagctcgagctttgctctctgctgttacccggttgctgattttggctgacatggcagatgtctacaaattacttgttcagctgaaagttgtggaagatggtatcttgaagttgaggaatgctggcaatgaacaagacttaggaatccagtataaagccctaaaacctgaagtggataagctgaacattatggcagccaaaagacaacaggaattgaaagatgttggccatcgtgatcagatggctgcagctagaggaatcctgcagaagaacgttccgatcctctatactgcatcccaggcatgcctacagcaccctgatgtcgcagcctataaggccaacagggacctgatatacaagcagctgcagcaggcggtcacaggcatttccaatgcagcccaggccactgcctcagacgatgcctcacagcaccagggtggaggaggaggagaactggcatatgcactcaataactttgacaaacaaatcattgtggaccccttgagcttcagcgaggagcgctttaggccttccctggaggagcgtctggaaagcatcattagtggggctgccttgatggccgactcgtcctgcacgcgtgatgaccgtcgtgagcgaattgtggcagagtgtaatgctgtccgccaggccctgcaggacctgctttcggagtacatgggcaatGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCCAGAATGGAATCCTGACAATGATACAGGACACACAATGGGTGATCCATTCATGTTGCAGCAGTCTACAAATCCAGCACCAGGAATTCTGGGACCTCCACCTCCCTCATTTCATCTTGGGGGACCAGCAGTTGGACCAAGAGGAAATCTGGGTGCTGGAAATGGAAACCTGCAAGGACCTAGACACATGCAGAAAGGCAGAGTGGAAACTAGCAGAGTTGTTCACATCATGGATTTTCAACGAGGGAAAAACTTGAGATACCAGCTATTACAGCTGGTAGAACCATTTGGAGTCATTTCAAATCATCTGATTCTAAATAAAATTAATGAGGCATTTATTGAAATGGCAACCACAGAGGATGCTCAGGCCGCAGTGGATTATTACACAACCACACCAGCGTTAGTATTTGGCAAGCCAGTGAGAGTTCATTTATCCCAGAAGTATAAAAGAATAAAGAAACCTGAAGGAAAGCCAGATCAGAAGTTTGATCAAAAGCAAGAGCTTGGACGTGTGATACATCTCAGCAATTTGCCGCATTCTGGCTATTCTGATAGTGCTGTTCTCAAGCTTGCTGAGCCTTATGGGAAAATAAAGAATTACATATTGATGAGGATGAAAAGTCAGGCTTTTATTGAGATGGAGACAAGAGAAGATGCAATGGCAATGGTTGACCATTGTTTGAAAAAAGCCCTTTGGTTTCAGGGGAGATGTGTGAAGGTTGACCTGTCTGAGAAATATAAAAAACTGGTTCTGAGGATTCCAAACAGAGGCATTGATTTACTGAAAAAAGATAAATCCCGAAAAAGATCTTACTCTCCAGATGGCAAAGAATCTCCAAGTGATAAGAAATCCAAAACTGATGGTTCCCAGAAGACTGAGAGTTCAACCGAAGGTAAAGAACAAGAAGAGAAGTCCGGTGAAGATGGTGAGAAAGACACAAAGGATGACCAGACAGAGCAGGAACCTAATATGCTTCTTGAATCTGAAGATGAGCTACTTGTAGATGAAGAAGAAGCAGCAGCACTGCTAGAAAGTGGCAGTTCAGTGGGAGACGAGACCGATCTTGCTAATTTAGGTGATGTGGCTTCTGATGGGAAAAAGGAACCATCAGATAAAGCTGTGAAAAAAGATGGAAGTGCTTCAGCAGCAGCAAAGAAAAAGCTTAAAAAGGTGGACAAGATCGAGGAACTTGATCAAGAAAACGAAGCAGCGTTGGAAAATGGAATTAAAAATGAGGAAAACACAGAACCAGGTGCTGAATCTTCTGAGAACGCTGATGATCCCAACAAAGATACAAGTGAAAACGCAGATGGTCAAAGTGATGAGAACAAGGACGACTATACAATCCCAGATGAGTATAGAATTGGACCATATCAGCCCAATGTTCCTGTTGGTATAGACTATGTGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAATACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGCAGACAGAAGAAGGAAACTTAA MTAVHAGNINFKWDPKSLEIRTLAVERLLEPLVTQVTTLVNTNSKGPSNKKRGRSKKAHVLAASVEQATENFLEKGDKIAKESQFLKEELVAAVEDVRKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATASDDASQHQGGGGGELAYALNNFDKQIIVDPLSFSEERFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNEWSQHINGASHSRRCQLLLEIYPEWNPDNDTGHTMGDPFMLQQSTNPAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDGSQKTESSTEGKEQEEKSGEDGEKDTKDDQTEQEPNMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVASDGKKEPSDKAVKKDGSASAAAKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESSENADDPNKDTSENADGQSDENKDDYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFLNKLAEERRQKKET* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Catenin Alpha 1 2 AML, MDS, cutaneous melanoma gastric cancer Hereditary Diffuse Gastric Cancer Syndrome epithelial, leukaemia_lymphoma TSG, fusion large_deletion, missense, nonsense, translocation FALSE NA NA NA NA NA NA NA NA NA 30705 CREBBP::USP7 ENSG00000005339.15::ENSG00000187555.17 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- USP7 ENSG00000187555.17 protein_coding - - chr16:8892097-8975328:- chr16:8930397:- chr16:8985954-9069185:- chr16:9024254:- chr16:3809350,chr16:3809356 chr16:8949103,chr16:8949106 NA NA chr16:3859351,chr16:3859357 chr16:9042960,chr16:9042963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Creb_binding|106-159|10^Creb_binding|322-340|9.7^zf-TAZ|354-405|1.6e-12^Creb_binding|443-482|0.096^KIX|550-629|4.6e-42^KIX_2|552-632|5.9e-10^Creb_binding|743-743|10^Creb_binding|825-852|4.2^Creb_binding|880-918|10 MATH-PARTIAL|~185-230|6.5e-17^UCH|249-553|5.4e-69^UCH_1|249-519|1.7e-14^UCH_1|573-614|1.6^USP7_C2|626-660|0.019^USP7_ICP0_bdg|630-653|0.19^USP7_ICP0_bdg|655-900|1.4e-80^USP7_C2|910-1121|4.1e-62^MATH|1032-1061|0.36 ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["USP7:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:5.01Mb] 146 50 146 50 ONLY_REF_SPLICE YES_LDAS 2.3772 GT 1.9219 AG 1.8323 ENST00000382070.7 1-975 ENST00000673704.1 185-3414 chr16|-|[2]3810603-3810779[0]|[2]3850297-3851009[1]|[0]3879832-3879916[0]<==>chr16|-|[2]8893998-8894104[1]|[0]8894550-8894640[0]|[2]8894784-8894855[0]|[2]8895031-8895150[0]|[2]8895642-8895741[2]|[1]8896999-8897099[0]|[2]8898360-8898437[0]|[2]8898531-8898639[2]|[1]8899121-8899188[0]|[2]8899604-8899757[2]|[1]8900530-8900630[0]|[2]8900990-8901057[1]|[0]8901142-8901234[1]|[0]8902082-8902187[0]|[2]8902381-8902482[0]|[2]8903268-8903402[0]|[2]8904435-8904565[1]|[0]8905187-8905331[0]|[2]8906426-8906582[2]|[1]8908341-8908450[0]|[2]8910745-8910827[1]|[0]8915254-8915344[0]|[2]8915445-8915525[0]|[2]8916502-8916556[2]|[1]8917026-8917156[0]|[2]8919031-8919139[2]|[1]8920359-8920447[0]|[2]8921157-8921295[2]|[1]8923215-8923413[1]|[0]8930293-8930397[1] atggctgagaacttgctggacggaccgcccaaccccaaaagagccaaactcagctcgcccggtttctcggcgaatgacagcacagattttggatcattgtttgacttggaaaatgatcttcctgatgagctgatacccaatggaggagaattaggccttttaaacagtgggaaccttgttccagatgctgcttccaaacataaacaactgtcggagcttctacgaggaggcagcggctctagtatcaacccaggaataggaaatgtgagcgccagcagccccgtgcagcagggcctgggtggccaggctcaagggcagccgaacagtgctaacatggccagcctcagtgccatgggcaagagccctctgagccagggagattcttcagcccccagcctgcctaaacaggcagccagcacctctgggcccacccccgctgcctcccaagcactgaatccgcaagcacaaaagcaagtggggctggcgactagcagccctgccacgtcacagactggacctggtatctgcatgaatgctaactttaaccagacccacccaggcctcctcaatagtaactctggccatagcttaattaatcaggcttcacaagggcaggcgcaagtcatgaatggatctcttggggctgctggcagaggaaggggagctggaatgccgtaccctactccagccatgcagggcgcctcgagcagcgtgctggctgagaccctaacgcaggtttccccgcaaatgactggtcacgcgggactgaacaccgcacaggcaggaggcatggccaagatgggaataactgggaacacaagtccatttggacagccctttagtcaagctggagggcagccaatgggagccactggagtgaacccccagttagccagcaaacagagcatggtcaacagtttgcccaccttccctacagatatcaagaatacttcagtcaccaacgtgccaaatatgCGGGAGATACAGATGACCCACCAAGAATTACTCAGAACCCTGTGATCAATGGGAATGTGGCCCTGAGTGATGGACACAACACCGCGGAGGAGGACATGGAGGATGACACCAGTTGGCGCTCCGAGGCAACCTTTCAGTTCACTGTGGAGCGCTTCAGCAGACTGAGTGAGTCGGTCCTTAGCCCTCCGTGTTTTGTGCGAAATCTGCCATGGAAGATTATGGTGATGCCACGCTTTTATCCAGACAGACCACACCAAAAAAGCGTAGGATTCTTTCTCCAGTGCAATGCTGAATCTGATTCCACGTCATGGTCTTGCCATGCACAAGCAGTGCTGAAGATAATAAATTACAGAGATGATGAAAAGTCGTTCAGTCGTCGTATTAGTCATTTGTTCTTCCATAAAGAAAATGATTGGGGATTTTCCAATTTTATGGCCTGGAGTGAAGTGACCGATCCTGAGAAAGGATTTATAGATGATGACAAAGTTACCTTTGAAGTCTTTGTACAGGCGGATGCTCCCCATGGAGTTGCGTGGGATTCAAAGAAGCACACAGGCTACGTCGGCTTAAAGAATCAGGGAGCGACTTGTTACATGAACAGCCTGCTACAGACGTTATTTTTCACGAATCAGCTACGAAAGGCTGTGTACATGATGCCAACCGAGGGGGATGATTCGTCTAAAAGCGTCCCTTTAGCATTACAAAGAGTGTTCTATGAATTACAGCATAGTGATAAACCTGTAGGAACAAAAAAGTTAACAAAGTCATTTGGGTGGGAAACTTTAGATAGCTTCATGCAACATGATGTTCAGGAGCTTTGTCGAGTGTTGCTCGATAATGTGGAAAATAAGATGAAAGGCACCTGTGTAGAGGGCACCATACCCAAATTATTCCGCGGCAAAATGGTGTCCTATATCCAGTGTAAAGAAGTAGACTATCGGTCTGATAGAAGAGAAGATTATTATGATATCCAGCTAAGTATCAAAGGAAAGAAAAATATATTTGAATCATTTGTGGATTATGTGGCAGTAGAACAGCTCGATGGGGACAATAAATACGACGCTGGGGAACATGGCTTACAGGAAGCAGAGAAAGGTGTGAAATTCCTAACATTGCCACCAGTGTTACATCTACAACTGATGAGATTTATGTATGACCCTCAGACGGACCAAAATATCAAGATCAATGATAGGTTTGAATTCCCAGAGCAGTTACCACTTGATGAATTTTTGCAAAAAACAGATCCTAAGGACCCTGCAAATTATATTCTTCATGCAGTCCTGGTTCATAGTGGAGATAATCATGGTGGACATTATGTGGTTTATCTAAACCCCAAAGGGGATGGCAAATGGTGTAAATTTGATGACGACGTGGTGTCAAGGTGTACTAAAGAGGAAGCAATTGAGCACAATTATGGGGGTCACGATGACGACCTGTCTGTTCGACACTGCACTAATGCTTACATGTTAGTCTACATCAGGGAATCAAAACTGAGTGAAGTTTTACAGGCGGTCACCGACCATGATATTCCTCAGCAGTTGGTGGAGCGATTACAAGAAGAGAAAAGGATCGAGGCTCAGAAGCGGAAGGAGCGGCAGGAAGCCCATCTCTATATGCAAGTGCAGATAGTCGCAGAGGACCAGTTTTGTGGCCACCAAGGGAATGACATGTACGATGAAGAAAAAGTGAAATACACTGTGTTCAAAGTATTGAAGAACTCCTCGCTTGCTGAGTTTGTTCAGAGCCTCTCTCAGACCATGGGATTTCCACAAGATCAAATTCGATTGTGGCCCATGCAAGCAAGGAGTAATGGAACAAAACGACCAGCAATGTTAGATAATGAAGCCGACGGCAATAAAACAATGATTGAGCTCAGTGATAATGAAAACCCTTGGACAATATTCCTGGAAACAGTTGATCCCGAGCTGGCTGCTAGTGGAGCGACCTTACCCAAGTTTGATAAAGATCATGATGTAATGTTATTTTTGAAGATGTATGATCCCAAAACGCGGAGCTTGAATTACTGTGGGCATATCTACACACCAATATCCTGTAAAATACGTGACTTGCTCCCAGTTATGTGTGACAGAGCAGGATTTATTCAAGATACTAGCCTTATCCTCTATGAGGAAGTTAAACCGAATTTAACAGAGAGAATTCAGGACTATGACGTGTCTCTTGATAAAGCCCTTGATGAACTAATGGATGGTGACATCATAGTATTTCAGAAGGATGACCCTGAAAATGATAACAGTGAATTACCCACCGCAAAGGAGTATTTCCGAGATCTCTACCACCGCGTTGATGTCATTTTCTGTGATAAAACAATCCCTAATGATCCTGGATTTGTGGTTACGTTATCAAATAGAATGAATTATTTTCAGGTTGCAAAGACAGTTGCACAGAGGCTCAACACAGATCCAATGTTGCTGCAGTTTTTCAAGTCTCAAGGTTATAGGGATGGCCCAGGTAATCCTCTTAGACATAATTATGAAGGTACTTTAAGAGATCTTCTACAGTTCTTCAAGCCTAGACAACCTAAGAAACTTTACTATCAGCAGCTTAAGATGAAAATCACAGACTTTGAGAACAGGCGAAGTTTTAAATGTATATGGTTAAACAGCCAATTTAGGGAAGAGGAAATAACACTATATCCAGACAAGCATGGGTGTGTCCGGGACCTGTTAGAAGAATGTAAAAAGGCCGTGGAGCTTGGGGAGAAAGCATCAGGGAAACTTAGGCTGCTAGAAATTGTAAGCTACAAAATCATTGGTGTTCATCAAGAAGATGAACTATTAGAATGTTTATCTCCTGCAACGAGCCGGACGTTTCGAATAGAGGAAATCCCTTTGGACCAGGTGGACATAGACAAAGAGAATGAGATGCTTGTCACAGTGGCGCATTTCCACAAAGAGGTCTTCGGAACGTTCGGAATCCCGTTTTTGCTGAGGATACACCAGGGCGAGCATTTTCGAGAAGTGATGAAGCGAATCCAGAGCCTGCTGGACATCCAGGAGAAGGAGTTTGAGAAGTTTAAATTTGCAATTGTAATGATGGGCCGACACCAGTACATAAATGAAGACGAGTATGAAGTAAATTTGAAAGACTTTGAGCCACAGCCCGGTAATATGTCTCATCCTCGGCCTTGGCTAGGGCTCGACCACTTCAACAAAGCCCCAAAGAGGAGTCGCTACACTTACCTTGAAAAGGCCATTAAAATCCATAACTGA MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNMREIQMTHQELLRTL*SMGMWP*VMDTTPRRRTWRMTPVGAPRQPFSSLWSASAD*VSRSLALRVLCEICHGRLW*CHAFIQTDHTKKA*DSFSSAMLNLIPRHGLAMHKQC*R**ITEMMKSRSVVVLVICSSIKKMIGDFPILWPGVK*PILRKDL*MMTKLPLKSLYRRMLPMELRGIQRSTQATSA*RIRERLVT*TACYRRYFSRISYERLCT*CQPRGMIRLKASL*HYKECSMNYSIVINL*EQKS*QSHLGGKL*IASCNMMFRSFVECCSIMWKIR*KAPV*RAPYPNYSAAKWCPISSVKK*TIGLIEEKIIMISS*VSKERKIYLNHLWIMWQ*NSSMGTINTTLGNMAYRKQRKV*NS*HCHQCYIYN**DLCMTLRRTKISRSMIGLNSQSSYHLMNFCKKQILRTLQIIFFMQSWFIVEIIMVDIMWFI*TPKGMANGVNLMTTWCQGVLKRKQLSTIMGVTMTTCLFDTALMLTC*STSGNQN*VKFYRRSPTMIFLSSWWSDYKKRKGSRLRSGRSGRKPISICKCR*SQRTSFVATKGMTCTMKKK*NTLCSKY*RTPRLLSLFRASLRPWDFHKIKFDCGPCKQGVMEQNDQQC*IMKPTAIKQ*LSSVIMKTLGQYSWKQLIPSWLLVERPYPSLIKIMM*CYF*RCMIPKRGA*ITVGISTHQYPVKYVTCSQLCVTEQDLFKILALSSMRKLNRI*QREFRTMTCLLIKPLMN*WMVTS*YFRRMTLKMITVNYPPQRSISEISTTALMSFSVIKQSLMILDLWLRYQIE*IIFRLQRQLHRGSTQIQCCCSFSSLKVIGMAQVILLDIIMKVL*EIFYSSSSLDNLRNFTISSLR*KSQTLRTGEVLNVYG*TANLGKRK*HYIQTSMGVSGTC*KNVKRPWSLGRKHQGNLGC*KL*ATKSLVFIKKMNY*NVYLLQRAGRFE*RKSLWTRWT*TKRMRCLSQWRISTKRSSERSESRFC*GYTRASIFEK**SESRACWTSRRRSLRSLNLQL**WADTST*MKTSMK*I*KTLSHSPVICLILGLG*GSTTSTKPQRGVATLTLKRPLKSIT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 30706 RIPOR1::NUTF2 ENSG00000039523.20::ENSG00000102898.13 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA TRUE 2149 TRUE 819 RIPOR1 ENSG00000039523.20 protein_coding + + chr16:67518418-67546788:+ chr16:67538550:+ chr16:67552321-67580691:+ chr16:67572453:+ NUTF2 ENSG00000102898.13 protein_coding + + chr16:67846882-67872567:+ chr16:67865102:+ chr16:67880785-67906470:+ chr16:67899005:+ chr16:67538685,chr16:67538677 chr16:67857233,chr16:67857222 NA NA chr16:67572588,chr16:67572580 chr16:67891136,chr16:67891125 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 101 64 101 56.23 ONLY_REF_SPLICE YES_LDAS 1.907 GT 1.3996 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30708 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1205 FALSE NA FALSE NA DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119071656:+ chr5:118373467-118584833:+ chr5:118407351:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ chr5:119078801,chr5:119078799 chr5:119270776,chr5:119270771 NA NA chr5:118414496,chr5:118414494 chr5:118606471,chr5:118606466 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none DUF758-PARTIAL|~32-196|4.4e-86^DUF2857-PARTIAL|~32-77|0.053^CAP12-PCTIR_TIR-PARTIAL|~32-42|1.2^LYRM2-like|39-96|2.1e-05^ArAE_1_C|42-110|7.2e-05^TetR-C_39|51-109|0.00026^Pico_P2B|63-97|2.5e-05^CAP12-PCTIR_TIR|66-126|0.00014^DUF6331|77-107|0.24^DUF2857|91-149|3.4e-05^DUF6331|92-141|0.0009^LYRM2-like|124-142|0.5^DUF6331|129-171|0.0043^TetR-C_39|137-146|6 ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.02Mb];NEIGHBORS[19554] 82 36 82 36 ONLY_REF_SPLICE YES_LDAS 1.4311 GT 1.8892 AG 1.9899 ENST00000539542.6 1-87 ENST00000503646.1 32-597 chr5|+|[0]119071570-119071656[2]<==>chr5|+|[1]119392816-119393381[2] atgaacctgcaccaggtgctgaccggggctgtgaaccctggcgaccactgcttctccgtgggcagcattggcgaccagcgcttcacgTGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAGATGAGCTAGCATTGATGGAGAAATTTAAGAAGAAAGTTCATCAGCTTGCTATGACCGTGGTCAGTTTCCATCAGGTGGATTATACCTTTGACCGGAATGTGTTATCCAGGCTGTTAAATGAATGCAGAGAGATGCTGCACCAAATCATTCAGCGCCACCTCACTGCCAAGTCACATGGACGGGTTAATAATGTGTTTGATCATTTTTCAGATTGTGAATTTTTGGCTGCCTTGTATAATCCTTTTGGGAATTTTAAACCCCACTTACAAAAACTATGTGATGGTATCAACAAAATGTTGGATGAAGAGAACATATGA MNLHQVLTGAVNPGDHCFSVGSIGDQRFTWPQMSLIPKTWPFRHKRRSWVKWCPNPSPPP**TTQVVRCWMSSTE*PGSTPKTRRRQRRSSRTSSRQSSSWPFFIGIISLIKMS*H*WRNLRRKFISLL*PWSVSIRWIIPLTGMCYPGC*MNAERCCTKSFSATSLPSHMDGLIMCLIIFQIVNFWLPCIILLGILNPTYKNYVMVSTKCWMKRTY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30711 RAB1A::PELI1 ENSG00000138069.18::ENSG00000197329.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RAB1A ENSG00000138069.18 protein_coding - - chr2:65070696-65130331:- chr2:65129893:- chr2:65297830-65357465:- chr2:65357027:- PELI1 ENSG00000197329.12 protein_coding - - chr2:64092652-64144420:- chr2:64108379:- chr2:64319786-64371554:- chr2:64335513:- chr2:65113454 chr2:64143526 NA NA chr2:65340588 chr2:64370660 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RAB1A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.93Mb] 53 15 53 15 ONLY_REF_SPLICE YES_LDAS 0.8247 GT 1.8892 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30712 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1206 TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];NEIGHBORS[22281] 52 23 52 18.12 ONLY_REF_SPLICE YES_LDAS 0.8505 GT 1.7056 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30713 TC2N::FBLN5 ENSG00000165929.13::ENSG00000140092.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1208 TRUE 2155 TRUE 824 TC2N ENSG00000165929.13 protein_coding - - chr14:91779746-91867536:- chr14:91802254:- chr14:92246090-92333880:- chr14:92268598:- FBLN5 ENSG00000140092.16 protein_coding - - chr14:91869411-91947987:- chr14:91895072:- chr14:92335755-92414331:- chr14:92361416:- chr14:91801125,chr14:91801129 chr14:91925632,chr14:91925633 NA NA chr14:92267469,chr14:92267473 chr14:92391976,chr14:92391977 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|242-335|2.2e-07^C2-PARTIAL|367-469~|7e-13 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.00Mb];LOCAL_REARRANGEMENT:-:[1876] 50 29 50 26.7 ONLY_REF_SPLICE YES_LDAS 0.9302 GT 1.8892 AG 1.7465 ENST00000340892.9 1-469 ENST00000706677.1 380-1395 chr14|-|[0]91802254-91802421[1]|[0]91812312-91812545[1]|[0]91813703-91813769[0]<==>chr14|-|[2]91870355-91870385[2]|[1]91873497-91873675[0]|[2]91877487-91877682[2]|[1]91881292-91881418[1]|[0]91882954-91883076[1]|[0]91887193-91887312[1]|[0]91891221-91891337[1]|[0]91894950-91895072[1] atggcaacagaatttataaagagttgctgtggaggatgtttctatggtgaaacagaaaaacacaacttttctgtggaaagagattttaaagcagcagtcccaaatagtcaaaatgctactatctctgtacctccattgacttctgtttctgtaaagcctcagcttggctgtactgaggattatttgctttccaaattaccatctgatggcaaagaagtaccatttgtggtgcccaagtttaagttatcttacattcaacccaggacacaagaaactccttcacatctggaagaacttgaaggatctgccagagcatcttttggagatcgaaaggtagaactttccagttcatcccagcacggacctagctatgatgtgtataacccattctatatgtatcagcacatttcacctgatttgagtcgacgctttcctccccgttcagaagtgaagagactgtatggatcggATGTGGACGAGTGTGCAACAGATTCCCACCAGTGCAACCCCACCCAGATCTGCATCAATACTGAAGGCGGGTACACCTGCTCCTGCACCGACGGATATTGGCTTCTGGAAGGCCAGTGCTTAGACATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGTTCCTGGATCCTATTCTTGTACATGCAACCCTGGTTTTACCCTCAATGAGGATGGAAGGTCTTGCCAAGATGTGAACGAGTGTGCCACCGAGAACCCCTGCGTGCAAACCTGCGTCAACACCTACGGCTCTTTCATCTGCCGCTGTGACCCAGGATATGAACTTGAGGAAGATGGCGTTCATTGCAGTGATATGGACGAGTGCAGCTTCTCTGAGTTCCTCTGCCAACATGAGTGTGTGAACCAGCCCGGCACATACTTCTGCTCCTGCCCTCCAGGCTACATCCTGCTGGATGACAACCGAAGCTGCCAAGACATCAACGAATGTGAGCACAGGAACCACACGTGCAACCTGCAGCAGACGTGCTACAATTTACAAGGGGGCTTCAAATGCATTGACCCCATCCGCTGTGAGGAGCCTTATCTGAGGATCAGTGATAACCGCTGTATGTGTCCTGCTGAGAACCCTGGCTGCAGAGACCAGCCCTTTACCATCTTGTACCGGGACATGGACGTGGTGTCAGGACGCTCCGTTCCCGCTGACATCTTCCAAATGCAAGCCACGACCCGCTACCCTGGGGCCTATTACATTTTCCAGATCAAATCTGGGAATGAGGGCAGAGAATTTTACATGCGGCGTGCATTCAGCACCACTGCATATGAGGCTTCAAGTCAGGCACTGAGCGTTGAGAAACAAACAGGATGTGGTCTCTGCCCTGGAGGAACCCACACACACCTTAGCGGAGAGGGGGAAAACAACCTAGCAAACACAACACAAAGTGGCGATTCTCAAGTCAAGTCAAGACCCATGGGATGCAAACGGGCCCCATCAGTGCCACCCTGGTGA MATEFIKSCCGGCFYGETEKHNFSVERDFKAAVPNSQNATISVPPLTSVSVKPQLGCTEDYLLSKLPSDGKEVPFVVPKFKLSYIQPRTQETPSHLEELEGSARASFGDRKVELSSSSQHGPSYDVYNPFYMYQHISPDLSRRFPPRSEVKRLYGSDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPPGYILLDDNRSCQDINECEHRNHTCNLQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRRAFSTTAYEASSQALSVEKQTGCGLCPGGTHTHLSGEGENNLANTTQSGDSQVKSRPMGCKRAPSVPPW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST exact 92278656,92278656 FALSE,FALSE 92409305,92361416 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30714 COL6A2::DIP2A ENSG00000142173.17::ENSG00000160305.18 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1210 FALSE NA FALSE NA COL6A2 ENSG00000142173.17 protein_coding + + chr21:46098112-46132848:+ chr21:46098173:+ chr21:47518026-47552762:+ chr21:47518087:+ DIP2A ENSG00000160305.18 protein_coding + + chr21:46458891-46570015:+ chr21:46539877:+ chr21:47878804-47989928:+ chr21:47959790:+ chr21:46105491,chr21:46105489 chr21:46539053,chr21:46539048 NA NA chr21:47525405,chr21:47525403 chr21:47958966,chr21:47958961 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.33Mb] 47 0 47 0 ONLY_REF_SPLICE YES_LDAS 0.57 GT 1.7968 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30715 KBTBD2::DPY19L1P1 ENSG00000170852.12::ENSG00000229358.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KBTBD2 ENSG00000170852.12 protein_coding - - chr7:32868172-32894131:- chr7:32879435:- chr7:32907784-32933743:- chr7:32919047:- DPY19L1P1 ENSG00000229358.3 unprocessed_pseudogene - - chr7:32580949-32761787:- chr7:32679130:- chr7:32620561-32801399:- chr7:32718742:- chr7:32875133 chr7:32695609 NA NA chr7:32914745 chr7:32735221 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.11Mb] 44 21 44 21 ONLY_REF_SPLICE YES_LDAS 0.7884 GT 1.8295 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30718 TC2N::FBLN5 ENSG00000165929.13::ENSG00000140092.16 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1209 TRUE 2155 TRUE 824 TC2N ENSG00000165929.13 protein_coding - - chr14:91779746-91867536:- chr14:91812312:- chr14:92246090-92333880:- chr14:92278656:- FBLN5 ENSG00000140092.16 protein_coding - - chr14:91869411-91947987:- chr14:91895072:- chr14:92335755-92414331:- chr14:92361416:- chr14:91801125,chr14:91801129 chr14:91925632,chr14:91925633 NA NA chr14:92267469,chr14:92267473 chr14:92391976,chr14:92391977 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2-PARTIAL|242-301~|2.2e-07 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.00Mb];LOCAL_REARRANGEMENT:-:[1876] 24 9 24 2.3 ONLY_REF_SPLICE YES_LDAS 0.319 GT 1.7819 AG 1.7465 ENST00000340892.9 1-301 ENST00000706677.1 380-1395 chr14|-|[0]91812312-91812545[1]|[0]91813703-91813769[0]<==>chr14|-|[2]91870355-91870385[2]|[1]91873497-91873675[0]|[2]91877487-91877682[2]|[1]91881292-91881418[1]|[0]91882954-91883076[1]|[0]91887193-91887312[1]|[0]91891221-91891337[1]|[0]91894950-91895072[1] atggcaacagaatttataaagagttgctgtggaggatgtttctatggtgaaacagaaaaacacaacttttctgtggaaagagattttaaagcagcagtcccaaatagtcaaaatgctactatctctgtacctccattgacttctgtttctgtaaagcctcagcttggctgtactgaggattatttgctttccaaattaccatctgatggcaaagaagtaccatttgtggtgcccaagtttaagttatcttacattcaacccaggacacaagaaactccttcacatctggaagaacttgaagATGTGGACGAGTGTGCAACAGATTCCCACCAGTGCAACCCCACCCAGATCTGCATCAATACTGAAGGCGGGTACACCTGCTCCTGCACCGACGGATATTGGCTTCTGGAAGGCCAGTGCTTAGACATTGATGAATGTCGCTATGGTTACTGCCAGCAGCTCTGTGCGAATGTTCCTGGATCCTATTCTTGTACATGCAACCCTGGTTTTACCCTCAATGAGGATGGAAGGTCTTGCCAAGATGTGAACGAGTGTGCCACCGAGAACCCCTGCGTGCAAACCTGCGTCAACACCTACGGCTCTTTCATCTGCCGCTGTGACCCAGGATATGAACTTGAGGAAGATGGCGTTCATTGCAGTGATATGGACGAGTGCAGCTTCTCTGAGTTCCTCTGCCAACATGAGTGTGTGAACCAGCCCGGCACATACTTCTGCTCCTGCCCTCCAGGCTACATCCTGCTGGATGACAACCGAAGCTGCCAAGACATCAACGAATGTGAGCACAGGAACCACACGTGCAACCTGCAGCAGACGTGCTACAATTTACAAGGGGGCTTCAAATGCATTGACCCCATCCGCTGTGAGGAGCCTTATCTGAGGATCAGTGATAACCGCTGTATGTGTCCTGCTGAGAACCCTGGCTGCAGAGACCAGCCCTTTACCATCTTGTACCGGGACATGGACGTGGTGTCAGGACGCTCCGTTCCCGCTGACATCTTCCAAATGCAAGCCACGACCCGCTACCCTGGGGCCTATTACATTTTCCAGATCAAATCTGGGAATGAGGGCAGAGAATTTTACATGCGGCGTGCATTCAGCACCACTGCATATGAGGCTTCAAGTCAGGCACTGAGCGTTGAGAAACAAACAGGATGTGGTCTCTGCCCTGGAGGAACCCACACACACCTTAGCGGAGAGGGGGAAAACAACCTAGCAAACACAACACAAAGTGGCGATTCTCAAGTCAAGTCAAGACCCATGGGATGCAAACGGGCCCCATCAGTGCCACCCTGGTGA MATEFIKSCCGGCFYGETEKHNFSVERDFKAAVPNSQNATISVPPLTSVSVKPQLGCTEDYLLSKLPSDGKEVPFVVPKFKLSYIQPRTQETPSHLEELEDVDECATDSHQCNPTQICINTEGGYTCSCTDGYWLLEGQCLDIDECRYGYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATENPCVQTCVNTYGSFICRCDPGYELEEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCSCPPGYILLDDNRSCQDINECEHRNHTCNLQQTCYNLQGGFKCIDPIRCEEPYLRISDNRCMCPAENPGCRDQPFTILYRDMDVVSGRSVPADIFQMQATTRYPGAYYIFQIKSGNEGREFYMRRAFSTTAYEASSQALSVEKQTGCGLCPGGTHTHLSGEGENNLANTTQSGDSQVKSRPMGCKRAPSVPPW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST exact 92278656,92278656 TRUE,TRUE 92409305,92361416 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30722 RFX2::RANBP3 ENSG00000087903.13::ENSG00000031823.14 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1211 FALSE NA FALSE NA RFX2 ENSG00000087903.13 protein_coding - - chr19:5993164-6199572:- chr19:6110393:- chr19:5993175-6199583:- chr19:6110404:- RANBP3 ENSG00000031823.14 protein_coding - - chr19:5916139-5978142:- chr19:5957973:- chr19:5916150-5978153:- chr19:5957984:- chr19:6052006,chr19:6052011 chr19:5967038,chr19:5967040 NA NA chr19:6052017,chr19:6052022 chr19:5967049,chr19:5967051 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RFX2:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr19:0.02Mb];NEIGHBORS[15022] 13 7 13 7 ONLY_REF_SPLICE YES_LDAS 0.2426 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30723 KMT5B::CHKA ENSG00000110066.16::ENSG00000110721.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68185781:- chr11:67922330-67981319:- chr11:67953248:- CHKA ENSG00000110721.12 protein_coding - - chr11:68052859-68121444:- chr11:68081848:- chr11:67820326-67888911:- chr11:67849315:- chr11:68184033,chr11:68184035 chr11:68096517,chr11:68096516 NA NA chr11:67951500,chr11:67951502 chr11:67863984,chr11:67863983 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CHKA:Oncogene"];["CCLE_StarF2019"] 13 11 13 9.1 INCL_NON_REF_SPLICE YES_LDAS 0.2681 GT 1.7232 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30730 STAU1::ENSG00000289904 ENSG00000124214.21::ENSG00000289904.1 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49135833:- chr20:47729876-47804904:- chr20:47752370:- ENSG00000289904 ENSG00000289904.1 lncRNA - - chr13:114265096-114268442:- chr13:114265359:- chr13:115030571-115033917:- chr13:115030834:- chr20:49133949,chr20:49133956 chr13:114267915,chr13:114267919 NA NA chr20:47750486,chr20:47750493 chr13:115033390,chr13:115033394 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1334 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30731 PTK2::AGO2 ENSG00000169398.20::ENSG00000123908.12 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1207 TRUE 2153 TRUE 822 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140948666:- chr8:141667999-142012315:- chr8:141958765:- AGO2 ENSG00000123908.12 protein_coding - - chr8:140520156-140635633:- chr8:140585311:- chr8:141530255-141645732:- chr8:141595410:- chr8:140936551,chr8:140936556 chr8:140586239,chr8:140586241 NA NA chr8:141946650,chr8:141946655 chr8:141596338,chr8:141596340 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];NEIGHBORS[22281] 7 30 7 11.88 ONLY_REF_SPLICE YES_LDAS 0.229 GT 1.8892 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30732 RSU1::ENSG00000286125 ENSG00000148484.18::ENSG00000286125.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1213 TRUE 2161 TRUE 828 RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56789928:+ chr19:57181309-57334763:+ chr19:57301296:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 6 6 3 ONLY_REF_SPLICE YES_LDAS 0.1092 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30735 ACAT1::RAB39A ENSG00000075239.14::ENSG00000179331.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1214 FALSE NA FALSE NA ACAT1 ENSG00000075239.14 protein_coding + + chr11:108116695-108147603:+ chr11:108135242:+ chr11:107987422-108018330:+ chr11:108005969:+ RAB39A ENSG00000179331.3 protein_coding + + chr11:107928448-107963482:+ chr11:107961946:+ chr11:107799174-107834208:+ chr11:107832672:+ chr11:108138905,chr11:108138898 chr11:107932143,chr11:107932131 NA NA chr11:108009632,chr11:108009625 chr11:107802869,chr11:107802857 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ACP_syn_III|33-48|1.5^Thiolase_N|42-298|2.9e-102^ketoacyl-synt|63-96|0.017^ketoacyl-synt|118-158|1.3e-09^ACP_syn_III|122-152|0.0011^ketoacyl-synt|281-299|0.25^ACP_syn_III|284-300|0.006 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.16Mb] 5 7 5 6.45 ONLY_REF_SPLICE YES_LDAS 0.1388 GT 1.9329 AG 1.7819 ENST00000672031.1 1-435 ENST00000320578.3 228-654 chr11|+|[0]108121607-108121678[2]|[0]108131907-108131954[2]|[0]108133820-108133937[0]|[1]108134221-108134316[0]|[1]108135142-108135242[2]<==>chr11|+|[2]107961946-107962372[2] atggctgtgctggcggcacttctgcgcagcggcgcccgcagccgcagccccctgctccggaggctggtgcaggaaataagatatgtggaacggagttatgtatcaaaacccactttgaaggaagtggtcatagtaagtgctacaagaacacccattggatcttttttaggcagcctttccttgctgccagccactaagcttggttccattgcaattcagggagccattgaaaaggcagggattccaaaagaagaagtgaaagaagcatacatgggtaatgttctacaaggaggtgaaggacaagctcctacaaggcaggcagtattgggtgcaggcttacctatttctactccatgtaccaccataaacaaagtttgtgcttcaggaatgaaagccatcatgatggcctctcaaagtcttatgtgtggacatcagATCAATAACCCGATCTTATTACCGCAACTCAGTTGGTGGATTTTTAGTATTTGACATTACTAACCGACGATCTTTTGAACATGTGAAAGATTGGCTAGAAGAAGCAAAAATGTATGTACAGCCATTTCGGATTGTATTTCTGCTAGTGGGACATAAATGTGATTTAGCTTCACAACGTCAAGTTACAAGGGAAGAAGCTGAAAAACTGTCAGCAGACTGTGGAATGAAGTATATAGAAACCTCAGCAAAGGATGCTACAAATGTTGAAGAATCCTTCACAATCTTGACGAGAGACATATATGAACTTATTAAAAAGGGAGAAATTTGTATTCAGGATGGCTGGGAAGGGGTTAAAAGTGGTTTTGTTCCAAATACTGTGCATTCTTCTGAGGAAGCAGTAAAGCCCAGGAAAGAATGCTTCTGCTGA MAVLAALLRSGARSRSPLLRRLVQEIRYVERSYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQINNPILLPQLSWWIFSI*HY*PTIF*TCERLARRSKNVCTAISDCISASGT*M*FSFTTSSYKGRS*KTVSRLWNEVYRNLSKGCYKC*RILHNLDERHI*TY*KGRNLYSGWLGRG*KWFCSKYCAFF*GSSKAQERMLLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30736 RSU1::ENSG00000286125 ENSG00000148484.18::ENSG00000286125.3 MDAMB157 SRR8615756 SRR8652103 BREAST carcinoma (ductal_carcinoma\, medullary) metastasis star-fusion TRUE TRUE TRUE 1212 TRUE 2161 TRUE 828 RSU1 ENSG00000148484.18 protein_coding - - chr10:16590611-16817463:- chr10:16752539:- chr10:16632610-16859462:- chr10:16794538:- ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56727644:+ chr19:57181309-57334763:+ chr19:57239012:+ chr10:16743322 chr19:56723082 NA NA chr10:16785321 chr19:57234450 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 3 9 3 6 ONLY_REF_SPLICE YES_LDAS 0.1092 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30737 BCAS4::BCAS3 ENSG00000124243.19::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1215 FALSE NA FALSE NA BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61368327:+ chr17:58754814-59470199:+ chr17:59445688:+ chr20:50816805,chr20:50797850 chr17:60728661,chr17:61238425 NA NA chr20:49433342,chr20:49414387 chr17:58806022,chr17:59315786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["BCAS4:Oncogene"];["BCAS3:Oncogene"];["chimerdb_pubmed","ChimerPub","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr17] 2784 3692 2784 3692 ONLY_REF_SPLICE YES_LDAS 73.1543 GT 1.6402 AG 1.9899 ENST00000358791.9 1-180 ENST00000588462.5 2471-2853 chr20|+|[0]50794994-50795173[2]<==>chr17|+|[1]61368327-61368494[0]|[1]61380506-61380571[0]|[1]61391977-61392125[2] atgcagcggaccgggggcggggctccgaggcccgggcgcaaccacgggctcccaggcagcctccgccagccggaccccgtcgccctcctgatgctgctcgtggacgctgatcagccggagcccatgcgcagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccgagGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAGACACAGCCCTTGACGTAGCAGTAAAAACCTTCCCCCCTGAGAGACACGTGGCAGTGAAGTGTTTTGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAG MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEVPLTGA*PCWRCAGAGLRASGCGTCPPWSTRRRASGSDLPTPWPSHLAGTSWDPEQTQPLT*Q*KPSPLRDTWQ*SVLNFSEREASRL*VTAQAPPAAAYQETLMATDLRCPPMRASPSASSRLASR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Kidney renal clear cell carcinoma KIDNEY no_match 49411710 TRUE 59445688 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30738 ARFGEF2::SULF2 ENSG00000124198.10::ENSG00000196562.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1216 FALSE NA FALSE NA ARFGEF2 ENSG00000124198.10 protein_coding + + chr20:48921711-49036693:+ chr20:48922010:+ chr20:47538248-47653230:+ chr20:47538547:+ SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47736942:- chr20:46284941-46415360:- chr20:46365686:- chr20:48924107,chr20:48924108 chr20:47749815,chr20:47749814 NA NA chr20:47540644,chr20:47540645 chr20:46378559,chr20:46378558 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DCB-PARTIAL|23-121~|7e-41^Sec7-like_HDS|69-95|0.23^HEAT|74-95|0.006^Sec7-like_HUS|76-95|3.3 Sulfatase-PARTIAL|~176-374|6.2e-46^Phosphodiest-PARTIAL|~176-320|9.3e-05^Mannosyl_trans2|187-211|0.66^SGSH_C|331-396|1.3e-16^DUF3740|528-664|3.2e-56^DUF3740|693-709|4.2^Mannosyl_trans2|745-793|0.00019^SGSH_C|777-814|0.0045 ["SULF2:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.14Mb] 604 184 604 184 ONLY_REF_SPLICE YES_LDAS 8.9014 GT 1.6895 AG 1.9656 ENST00000371917.5 1-121 ENST00000484875.5 176-2613 chr20|+|[0]48921890-48922010[0]<==>chr20|-|[2]47658362-47658392[2]|[1]47659399-47659452[2]|[1]47659697-47659730[1]|[0]47661773-47661896[0]|[2]47663070-47663212[1]|[0]47663453-47663622[2]|[1]47664130-47664189[2]|[1]47665199-47665293[0]|[2]47665857-47665953[2]|[1]47666260-47666488[1]|[0]47672198-47672393[0]|[2]47676494-47676623[2]|[1]47677078-47677134[2]|[1]47678676-47678804[2]|[1]47682994-47683169[0]|[2]47684431-47684581[2]|[1]47690126-47690295[0]|[2]47702519-47702670[1]|[0]47736703-47736942[1] atgcaggagagccagaccaagagcatgttcgtgtcccgggccctggagaagatcctagccgacaaggaggtgaagcggccccagcactcccagctgcgcagggcctgccaggtggcgctcgGTTCCATGCAGGTGATGAACAAGACCCGGCGCATCATGGAGCAGGGCGGGGCGCACTTCATCAACGCCTTCGTGACCACACCCATGTGCTGCCCCTCACGCTCCTCCATCCTCACTGGCAAGTACGTCCACAACCACAACACCTACACCAACAATGAGAACTGCTCCTCGCCCTCCTGGCAGGCACAGCACGAGAGCCGCACCTTTGCCGTGTACCTCAATAGCACTGGCTACCGGACAGCTTTCTTCGGGAAGTATCTTAATGAATACAACGGCTCCTACGTGCCACCCGGCTGGAAGGAGTGGGTCGGACTCCTTAAAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAGGATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAGGCCAGTCCTCATGGTCATCAGCCATGCAGCCCCCCACGGCCCTGAGGATTCAGCCCCACAATATTCACGCCTCTTCCCAAACGCATCTCAGCACATCACGCCGAGCTACAACTACGCGCCCAACCCGGACAAACACTGGATCATGCGCTACACGGGGCCCATGAAGCCCATCCACATGGAATTCACCAACATGCTCCAGCGGAAGCGCTTGCAGACCCTCATGTCGGTGGACGACTCCATGGAGACGATTTACAACATGCTGGTTGAGACGGGCGAGCTGGACAACACGTACATCGTATACACCGCCGACCACGGTTACCACATCGGCCAGTTTGGCCTGGTGAAAGGGAAATCCATGCCATATGAGTTTGACATCAGGGTCCCGTTCTACGTGAGGGGCCCCAACGTGGAAGCCGGCTGTCTGAATCCCCACATCGTCCTCAACATTGACCTGGCCCCCACCATCCTGGACATTGCAGGCCTGGACATACCTGCGGATATGGACGGGAAATCCATCCTCAAGCTGCTGGACACGGAGCGGCCGGTGAATCGGTTTCACTTGAAAAAGAAGATGAGGGTCTGGCGGGACTCCTTCTTGGTGGAGAGAGGCAAGCTGCTACACAAGAGAGACAATGACAAGGTGGACGCCCAGGAGGAGAACTTTCTGCCCAAGTACCAGCGTGTGAAGGACCTGTGTCAGCGTGCTGAGTACCAGACGGCGTGTGAGCAGCTGGGACAGAAGTGGCAGTGTGTGGAGGACGCCACGGGGAAGCTGAAGCTGCATAAGTGCAAGGGCCCCATGCGGCTGGGCGGCAGCAGAGCCCTCTCCAACCTCGTGCCCAAGTACTACGGGCAGGGCAGCGAGGCCTGCACCTGTGACAGCGGGGACTACAAGCTCAGCCTGGCCGGACGCCGGAAAAAACTCTTCAAGAAGAAGTACAAGGCCAGCTATGTCCGCAGTCGCTCCATCCGCTCAGTGGCCATCGAGGTGGACGGCAGGGTGTACCACGTAGGCCTGGGTGATGCCGCCCAGCCCCGAAACCTCACCAAGCGGCACTGGCCAGGGGCCCCTGAGGACCAAGATGACAAGGATGGTGGGGACTTCAGTGGCACTGGAGGCCTTCCCGACTACTCAGCCGCCAACCCCATTAAAGTGACACATCGGTGCTACATCCTAGAGAACGACACAGTCCAGTGTGACCTGGACCTGTACAAGTCCCTGCAGGCCTGGAAAGACCACAAGCTGCACATCGACCACGAGATTGAAACCCTGCAGAACAAAATTAAGAACCTGAGGGAAGTCCGAGGTCACCTGAAGAAAAAGCGGCCAGAAGAATGTGACTGTCACAAAATCAGCTACCACACCCAGCACAAAGGCCGCCTCAAGCACAGAGGCTCCAGTCTGCATCCTTTCAGGAAGGGCCTGCAAGAGAAGGACAAGGTGTGGCTGTTGCGGGAGCAGAAGCGCAAGAAGAAACTCCGCAAGCTGCTCAAGCGCCTGCAGAACAACGACACGTGCAGCATGCCAGGCCTCACGTGCTTCACCCACGACAACCAGCACTGGCAGACGGCGCCTTTCTGGACACTGGGGCCTTTCTGTGCCTGCACCAGCGCCAACAATAACACGTACTGGTGCATGAGGACCATCAATGAGACTCACAATTTCCTCTTCTGTGAATTTGCAACTGGCTTCCTAGAGTACTTTGATCTCAACACAGACCCCTACCAGCTGATGAATGCAGTGAACACACTGGACAGGGATGTCCTCAACCAGCTACACGTACAGCTCATGGAGCTGAGGAGCTGCAAGGGTTACAAGCAGTGTAACCCCCGGACTCGAAACATGGACCTGGGACTTAAAGATGGAGGAAGCTATGAGCAATACAGGCAGTTTCAGCGTCGAAAGTGGCCAGAAATGAAGAGACCTTCTTCCAAATCACTGGGACAACTGTGGGAAGGCTGGGAAGGTTAA MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALGSMQVMNKTRRIMEQGGAHFINAFVTTPMCCPSRSSILTGKYVHNHNTYTNNENCSSPSWQAQHESRTFAVYLNSTGYRTAFFGKYLNEYNGSYVPPGWKEWVGLLKNSRFYNYTLCRNGVKEKHGSDYSKDYLTDLITNDSVSFFRTSKKMYPHRPVLMVISHAAPHGPEDSAPQYSRLFPNASQHITPSYNYAPNPDKHWIMRYTGPMKPIHMEFTNMLQRKRLQTLMSVDDSMETIYNMLVETGELDNTYIVYTADHGYHIGQFGLVKGKSMPYEFDIRVPFYVRGPNVEAGCLNPHIVLNIDLAPTILDIAGLDIPADMDGKSILKLLDTERPVNRFHLKKKMRVWRDSFLVERGKLLHKRDNDKVDAQEENFLPKYQRVKDLCQRAEYQTACEQLGQKWQCVEDATGKLKLHKCKGPMRLGGSRALSNLVPKYYGQGSEACTCDSGDYKLSLAGRRKKLFKKKYKASYVRSRSIRSVAIEVDGRVYHVGLGDAAQPRNLTKRHWPGAPEDQDDKDGGDFSGTGGLPDYSAANPIKVTHRCYILENDTVQCDLDLYKSLQAWKDHKLHIDHEIETLQNKIKNLREVRGHLKKKRPEECDCHKISYHTQHKGRLKHRGSSLHPFRKGLQEKDKVWLLREQKRKKKLRKLLKRLQNNDTCSMPGLTCFTHDNQHWQTAPFWTLGPFCACTSANNNTYWCMRTINETHNFLFCEFATGFLEYFDLNTDPYQLMNAVNTLDRDVLNQLHVQLMELRSCKGYKQCNPRTRNMDLGLKDGGSYEQYRQFQRRKWPEMKRPSSKSLGQLWEGWEG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30739 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1217 TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59914703:+ chr17:57970407-58027935:+ chr17:57992064:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59921772 chr17:59838514 NA NA chr17:57999133 chr17:57915875 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2|90-151|0.015^Pkinase|91-352|2.5e-74^PK_Tyr_Ser-Thr|92-335|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1|166-242|6e-07^DUF1015|173-215|0.00014^FTA2|200-225|0.0013^Kinase-like|207-335|7.5e-11^Pkinase_fungal|207-275|5.5e-08^Pkinase_C-PARTIAL|373-381~|1.4e-14 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 346 262 346 239.88 ONLY_REF_SPLICE YES_LDAS 6.6182 GT 1.7465 AG 1.7819 ENST00000406116.7 1-381 ENST00000262291.9 1078-1221 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]<==>chr17|+|[0]59839768-59839911[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaacttggcatggaacattgtgagaaatttgaaatctcagaaactagtgtgaacagagggccagaaaaaatcagaccagaatgttttgagctacttcgggtacttggtaaagggggctatggaaaggtttttcaagtacgaaaagtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaaagGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE|FALSE,FALSE,TRUE|FALSE,TRUE|FALSE|TRUE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE,TRUE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,TRUE|TRUE|TRUE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30740 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 1218 TRUE 2169 TRUE 832 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59910611:+ chr17:57970407-58027935:+ chr17:57987972:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2|90-151|0.015^Pkinase-PARTIAL|91-191~|2.5e-74^PK_Tyr_Ser-Thr-PARTIAL|92-191~|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1-PARTIAL|166-191~|6e-07^DUF1015-PARTIAL|173-191~|0.00014 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 171 143 171 94.12 ONLY_REF_SPLICE YES_LDAS 2.9949 GT 1.9656 AG 1.8062 ENST00000406116.7 1-191 ENST00000262291.9 975-1221 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]<==>chr17|+|[2]59838295-59838397[2]|[0]59839768-59839911[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaactTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE,FALSE|TRUE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|TRUE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30743 PAPOLA::AK7 ENSG00000090060.19::ENSG00000140057.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1224 FALSE NA FALSE NA PAPOLA ENSG00000090060.19 protein_coding + + chr14:96501433-96567116:+ chr14:96502600:+ chr14:96967770-97033453:+ chr14:96968937:+ AK7 ENSG00000140057.9 protein_coding + + chr14:96392128-96489427:+ chr14:96437835:+ chr14:96858465-96955764:+ chr14:96904172:+ chr14:96515170,chr14:96515164,chr14:96515169 chr14:96428717,chr14:96428715,chr14:96428715 NA NA chr14:96981507,chr14:96981501,chr14:96981506 chr14:96895054,chr14:96895052,chr14:96895052 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none AAA_28-PARTIAL|~610-616|6.1^GBP_C|612-677|0.00013^AAA_17|614-657|2.9^AAA_16|622-643|6.7^Hydin_ADK|628-650|1.9^AAA_18|631-642|2.6^Dpy-30|679-720|5.7e-23^RIIa|698-714|0.0005 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_REARRANGEMENT:+:[12006] 121 32 121 32 ONLY_REF_SPLICE YES_LDAS 1.7283 GT 1.9219 AG 1.9219 ENST00000556619.5 1-8 ENST00000267584.9 610-2172 chr14|+|[0]96502593-96502600[1]<==>chr14|+|[0]96437835-96437915[2]|[0]96442730-96442818[1]|[2]96446517-96446607[2]|[0]96449802-96449879[2]|[0]96451421-96451570[2]|[0]96456347-96456475[2]|[0]96458083-96458212[0]|[1]96471478-96471606[0]|[1]96472687-96472755[0]|[1]96478465-96478662[0]|[1]96482999-96483219[2]|[0]96486898-96487056[2]|[0]96488305-96488343[2] atgccgttGCCAGAAAATTTGCAGCATACGTAGTTGCTGCTGGACTCCAGTATGGAGCGGAAGGAGGCATGTTACACACATTTTTTAAGATGGCTTGGTTGGGCGAGATTCCTGCATTACCAGTTTTTGGCGATGGAACAAATGTAATTCCAACAATCCATGTTCTTGATCTAGCAGGAGTGATACAAAACGTCATAGATCACGTGCCAAAGCCTCACTACCTGGTTGCTGTGGATGAGTCTGTTCATACCCTGGAAGACATAGTCAAGTGTATCAGTAAAAATACTGGCCCTGGGAAAATCCAGAAAATACCCAGAGAAAATGCATACCTAACCAAGGACTTAACGCAAGATTGTCTTGACCATTTACTGGTCAACTTAAGAATGGAAGCGCTCTTTGTGAAGGAGAATTTTAATATTCGATGGGCTGCCCAAACAGGATTTGTGGAAAATATCAACACTATCCTCAAGGAGTACAAGCAAAGCAGAGGATTGATGCCAATCAAGATCTGCATTCTTGGTCCCCCTGCTGTGGGAAAATCCAGTATTGCTAAAGAATTGGCCAACTACTACAAACTGCATCACATCCAACTGAAGGATGTCATTTCTGAAGCCATAGCAAAACTGGAGGCGATTGTTGCCCCTAACGATGTAGGGGAAGGAGAAGAAGAAGTCGAAGAGGAAGAGGAGGAGGAGAATGTGGAAGATGCACAGGAGCTCCTAGATGGCATCAAGGAGAGCATGGAGCAGAATGCAGGTCAACTAGACGATCAATATATAATTAGATTTATGAAAGAAAAGCTAAAATCAATGCCTTGCAGGAATCAAGGTTATATTTTGGATGGATTCCCAAAGACCTATGATCAAGCAAAAGACCTGTTCAATCAGGAAGATGAGGAGGAGGAAGATGATGTCAGAGGCAGAATGTTTCCCTTTGATAAATTAATTATACCTGAATTCGTTTGTGCACTGGATGCTTCGGATGAGTTTCTGAAGGAGCGTGTGATAAACCTTCCTGAGAGCATCGTGGCGGGGACCCACTACAGCCAAGACCGATTCCTCCGGGCTCTGAGCAACTACCGGGACATCAATATCGACGATGAGACTGTCTTCAACTATTTTGATGAACTTGAAATTCACCCGATACATATTGATGTAGGAAAACTTGAAGATGCTCAGAATAGACTTGCTATCAAACAGCTCATCAAAGAGATTGGGGAGCCTCGAAATTATGGTTTAACAGACGAAGAAAAGGCAGAAGAGGAGCGGAAGGCTGCGGAGGAGCGGCTGGCCAGGGAGGCTGCTGAGGAAGCAGAACGCGAGCACCAGGAGGCCGTGGAGATGGCAGAGAAGATAGCTCGCTGGGAGGAGTGGAATAAACGACTGGAGGAAGTGAAAAGAGAAGAAAGAGAATTACTGGAGGCTCAGTCAATTCCCCTGAGAAACTATTTAATGACCTATGTGATGCCAACTCTTATTCAGGGCCTGAATGAATGTTGCAACGTCCGACCCGAAGACCCTGTTGATTTTCTGGCAGAATATCTCTTCAAGAACAATCCTGAAGCACAGTGA MPLPENLQHT*LLLDSSMERKEACYTHFLRWLGWARFLHYQFLAMEQM*FQQSMFLI*QE*YKTS*ITCQSLTTWLLWMSLFIPWKT*SSVSVKILALGKSRKYPEKMHT*PRT*RKIVLTIYWST*EWKRSL*RRILIFDGLPKQDLWKISTLSSRSTSKAED*CQSRSAFLVPLLWENPVLLKNWPTTTNCITSN*RMSFLKP*QNWRRLLPLTM*GKEKKKSKRKRRRRMWKMHRSS*MASRRAWSRMQVN*TINI*LDL*KKS*NQCLAGIKVIFWMDSQRPMIKQKTCSIRKMRRRKMMSEAECFPLIN*LYLNSFVHWMLRMSF*RSV**TFLRASWRGPTTAKTDSSGL*ATTGTSISTMRLSSTILMNLKFTRYILM*ENLKMLRIDLLSNSSSKRLGSLEIMV*QTKKRQKRSGRLRRSGWPGRLLRKQNASTRRPWRWQRR*LAGRSGINDWRK*KEKKENYWRLSQFP*ETI**PM*CQLLFRA*MNVATSDPKTLLIFWQNISSRTILKHS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact TRUE Lung adenocarcinoma LUNG no_match 97022750 FALSE 96904172 TRUE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30744 TXLNG::SYAP1 ENSG00000086712.13::ENSG00000169895.6 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1220 FALSE NA FALSE NA TXLNG ENSG00000086712.13 protein_coding + + chrX:16786432-16844519:+ chrX:16786589:+ chrX:16804555-16862642:+ chrX:16804712:+ SYAP1 ENSG00000169895.6 protein_coding + + chrX:16719612-16765340:+ chrX:16735227:+ chrX:16737735-16783463:+ chrX:16753350:+ chrX:16795043 chrX:16730322 NA NA chrX:16813166 chrX:16748445 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none BSD-PARTIAL|~176-213|4.8e-17^DUF2340|262-334|3.8e-05^RlaP|284-348|2.6e-05^BSD|289-298|1.3^CCDC84|301-336|0.01^BSD|314-331|0.48^BSD|339-352|0.97 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.02Mb];LOCAL_REARRANGEMENT:+:[21091] 118 78 118 78 ONLY_REF_SPLICE YES_LDAS 2.2141 GT 1.5656 AG 1.3996 ENST00000380122.10 1-102 ENST00000380155.4 176-1059 chrX|+|[0]16786488-16786589[2]<==>chrX|+|[1]16735227-16735345[2]|[0]16736166-16736232[0]|[1]16741716-16741789[2]|[0]16743701-16743840[1]|[2]16754945-16755093[0]|[1]16756663-16756721[2]|[0]16757162-16757309[0]|[1]16760232-16760359[2] atggcgacgcgggtagaggaggcagcgcggggaagaggcggcggcgccgaagaggcgactgaggccggacggggcggacggcgacgcagcccgcggcagaagACTATTTATTTAACTTTGCATCTGCTGCCACAAAAAAGATAACTGAATCAGTTGCTGAAACAGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAGATGGCATCATTGACAAGACAATTATAGGAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAAGAGCAACATACAAAGAAGTCAGAAGCAGCTGTGCCCCCATGGGTTGACACTAACGATGAAGAAACAATTCAACAACAAATTTTGGCCTTATCAGCTGACAAGAGGAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATTTAATTTCGACTTTGATCAGATGTACCCCGTGGCCCTGGTCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGAGATTTGCCCTCGTTCCTAAACTTGTGAAGGAAGAAGTGTTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATTAAGCAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACAGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCAGAGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCAAAACGCCACCCGTTGTAATCAAATCTCAGCTTAAAACTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGTGTTTCTGAGTTTGTCAGTGATGCCTTCGATGCCTGTAACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCAACTAGTGCTTGACAAAAAGCAAGAGGAGACAGCCGTACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGCAGCAGGAACTTCAAGAATATGAAGTGGTGACAGAATCTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAGAAAATGCTTCAAGAGGAAAATTAG MATRVEEAARGRGGGAEEATEAGRGGRRRSPRQKTIYLTLHLLPQKR*LNQLLKQHKQ*RNP*KKEK*MASLTRQL*EIFRRNRKNLLKSNIQRSQKQLCPHGLTLTMKKQFNNKFWPYQLTRGISFVTLRLACNLISTLIRCTPWPWSCSRRMSC*AR*DLPSFLNL*RKKCSGGTTFTASP*LSSQPSSRPWLPNSRPQGRRRRAMAESKICRWQRQYGPKRHPL*SNLSLKLKRMRKKFLLAQVFLSLSVMPSMPVT*IRKI*GKKWSN*CLTKSKRRQPYWKRILQIGKKNCSRNFKNMKW*QNLKNEMKTGIRK*RKCFKRKI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30745 POP1::MATN2 ENSG00000104356.11::ENSG00000132561.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1228 FALSE NA FALSE NA POP1 ENSG00000104356.11 protein_coding + + chr8:98117293-98159835:+ chr8:98117390:+ chr8:99129521-99172063:+ chr8:99129618:+ MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:98030462:+ chr8:98881068-99048952:+ chr8:99042690:+ chr8:98120860,chr8:98120860,chr8:98120861 chr8:98030182,chr8:98030171,chr8:98030169 NA NA chr8:99133088,chr8:99133088,chr8:99133089 chr8:99042410,chr8:99042399,chr8:99042397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.08Mb];LOCAL_REARRANGEMENT:+:[80581] 107 1 107 1 ONLY_REF_SPLICE YES_LDAS 1.22 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30746 RPS6KB1::DIAPH3 ENSG00000108443.14::ENSG00000139734.19 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930174:+ chr17:57970407-58027935:+ chr17:58007535:+ DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:59666846:- chr13:60239717-60738062:- chr13:60240980:- chr17:59930690,chr17:59930685 chr13:59746800,chr13:59746801 NA NA chr17:58008051,chr17:58008046 chr13:60320934,chr13:60320935 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FTA2|90-151|0.015^Pkinase|91-352|2.5e-74^PK_Tyr_Ser-Thr|92-335|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1|166-242|6e-07^DUF1015|173-215|0.00014^FTA2|200-225|0.0013^Kinase-like|207-335|7.5e-11^Pkinase_fungal|207-275|5.5e-08^Pkinase_C|373-413|1.4e-14^Pkinase|404-421|1.5 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr13] 86 77 86 76.63 ONLY_REF_SPLICE YES_LDAS 1.8371 GT 1.9329 AG 1.7232 ENST00000406116.7 1-587 ENST00000400319.5 3110-3372 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]|[0]59926435-59926582[0]|[1]59930117-59930174[1]<==>chr13|-|[2]59666584-59666846[1] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaacttggcatggaacattgtgagaaatttgaaatctcagaaactagtgtgaacagagggccagaaaaaatcagaccagaatgttttgagctacttcgggtacttggtaaagggggctatggaaaggtttttcaagtacgaaaagtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaaaggcaatgatagtaagaaatgctaaagatacagctcatacaaaagcagaacggaatattctggaggaagtaaagcatcccttcatcgtggatttaatttatgcctttcagactggtggaaaactctacctcatccttgagtatctcagtggaggagaactatttatgcagttagaaagagagggaatatttatggaagacactgcctgAAAATCAGAAAGTGCAGTTGACAGAAGGGTCACGTTCACACTACAATATCAATTGCAACTCAACAAGGACTCCAGTCGCCAAGGAGCTTAATTATAATCTAGACACTCATACGTCTACTGGGAGGATCAAGGCAGCTGAGAAGAAGGAAGCGTGTAATGTAGAAAGCAACAGAAAAAAGGAAACGGAACTTCTTGGCTCTTTTTCTAAAAATGAATCAGTTCCCGAAGTTGAAGCCCTGCTGGCAAGATTACGAGCTTTATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTA*KSESAVDRRVTFTLQYQLQLNKDSSRQGA*L*SRHSYVYWEDQGS*EEGSV*CRKQQKKGNGTSWLFF*K*ISSRS*SPAGKITSFI FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30747 DEPDC1B::ELOVL7 ENSG00000035499.13::ENSG00000164181.14 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1223 FALSE NA FALSE NA DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60638750:- chr5:59892739-59996017:- chr5:59934577:- ELOVL7 ENSG00000164181.14 protein_coding - - chr5:60751791-60844274:- chr5:60757645:- chr5:60047618-60140101:- chr5:60053472:- chr5:60633807,chr5:60633809,chr5:60633812 chr5:60761655,chr5:60761656,chr5:60761657 NA NA chr5:59929634,chr5:59929636,chr5:59929639 chr5:60057482,chr5:60057483,chr5:60057484 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DEP|28-106|6.3e-23^RhoGAP|69-81|0.52^RhoGAP|270-342|6.6e-12^DEP|378-398|0.11 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.05Mb];LOCAL_REARRANGEMENT:-:[51601] 65 77 65 77 ONLY_REF_SPLICE YES_LDAS 1.6041 GT 1.8323 AG 1.7819 ENST00000453022.6 1-898 ENST00000508821.6 500-846 chr5|-|[0]60638750-60638890[1]|[0]60642812-60642859[1]|[0]60644745-60644875[2]|[1]60645492-60645619[0]|[2]60647398-60647533[2]|[1]60686962-60687227[0]|[2]60700046-60700093[0]<==>chr5|-|[2]60754624-60754833[0]|[2]60757509-60757645[1] atggagcatcgcatcgtggggcccgggccgtaccgagctaccaggctgtggaatgagaccgtggagctttttcgtgctaagatgccgttacggaaacatcgctgtcgtttcaagagctatgagcattgtttcacagcggccgaagctgtggattggctgcatgagctgctgaggtgcagtcaaaacttcggccctgaagtgacccgcaaacaaacggtccagctgctaaaaaaattcctgaagaatcacgttattgaagacatcaagggaaaatggggtgaggaagattttgaagacaatcgtcacttatacagatttcctccttcttcacccctgaaaccatatccaaagaagcccccaaaccaaaaggatgttattaaatttccagaatggaatgatctcccaccaggcacttcacaagagaacatcccagtgaggccagttgtgatgaattctgagatgtggtacaagcgtcacagtattgcaattggagaggtgccagcttgccgtcttgtccaccgcagacagctgacagaggccaatgtagaagagatatggaagtctatgacattatcatacttacagaaaattcttggcctggattccttagaagaagttttagacgtcaaacttgtcaattcgaagttcatcatccataatgtatatagtgttagcaagcagggagttgttattcttgatgacaagtcaaaagaacttcctcattgggtgctgtcagctatgaagtgtttggcaaattggcccaactgttctgatttgaagcagcctatgtacttgggatttgaaaaagatgtctttaaaaccatagctgattactatggtcacttgaaagagcctctacttacatttcatctttttgatgcttttgtcagtgtactggGTGGTTTGGGAACATTCCATGCCCTTCTAAATACAGCTGTACATGTAGTCATGTATTCCTACTATGGACTTTCTGCATTGGGGCCAGCCTACCAGAAGTATTTGTGGTGGAAAAAATATTTGACATCATTACAGCTTGTCCAGTTTGTTATTGTCGCCATCCACATAAGCCAGTTCTTTTTCATGGAGGATTGCAAGTATCAGTTTCCAGTCTTTGCGTGCATCATTATGAGTTACAGTTTCATGTTTCTGCTGCTCTTTCTCCATTTTTGGTACCGTGCTTACACCAAAGGTCAGAGGTTGCCCAAAACTGTGAAAAATGGAACTTGCAAAAACAAAGATAATTGA MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Esophageal carcinoma OESOPHAGUS no_match 59995873 FALSE 60083258 FALSE YES CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30748 SMARCA4::CARM1 ENSG00000127616.22::ENSG00000142453.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1225 FALSE NA FALSE NA SMARCA4 ENSG00000127616.22 protein_coding + + chr19:10960932-11079426:+ chr19:10986593:+ chr19:11071608-11190102:+ chr19:11097269:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10904951:+ chr19:10982229-11033751:+ chr19:11015627:+ chr19:10987004,chr19:10987000 chr19:10890371,chr19:10890364 NA NA chr19:11097680,chr19:11097676 chr19:11001047,chr19:11001040 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame QLQ|171-205|2.6e-18^DUF2009|412-523|0.00016^Helicase_C|413-475|1.1^HSA|462-531|2.8e-22^Helicase_C|545-589|7.7^BRK|611-654|4.7e-21^SnAC|657-673|3.4^ResIII-PARTIAL|754-760~|4.9e-15^SNF2-rel_dom-PARTIAL|757-760~|1e-104 PrmA-PARTIAL|~221-257|2.9e-13^Methyltransf_25-PARTIAL|~221-283|8.2e-12^MTS-PARTIAL|~221-286|7.5e-11^Methyltransf_9-PARTIAL|~221-285|2.3e-09^Methyltransf_11-PARTIAL|~221-285|8.9e-09^Methyltransf_31-PARTIAL|~221-286|2e-08^PRMT5-PARTIAL|~221-282|2.3e-08^Methyltransf_23-PARTIAL|~221-259|1.5e-07^Methyltransf_18-PARTIAL|~221-266|1.9e-06^Methyltransf_12-PARTIAL|~221-283|1.2e-05^Met_10-PARTIAL|~221-276|7.1e-06^FtsJ-PARTIAL|~221-232|1.7e-05^CMAS-PARTIAL|~221-286|4.3e-05^TehB-PARTIAL|~221-272|2.3e-05^Methyltransf_32-PARTIAL|~221-252|0.00011^PRMT5_C|372-435|4.8e-05^MTS|426-451|4.1^Methyltransf_12|460-484|4.5 ["SMARCA4:Oncogene","SMARCA4:FoundationOne_panel","SMARCA4:ArcherDX_panel"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.04Mb];LOCAL_REARRANGEMENT:+:[37931] 60 64 60 64 ONLY_REF_SPLICE YES_LDAS 1.4008 GT 1.9329 AG 1.5656 ENST00000643296.1 1-760 ENST00000327064.9 221-1827 chr19|+|[0]10984152-10984373[2]|[0]10985273-10985405[0]|[1]10986189-10986593[0]<==>chr19|+|[1]10904951-10905076[0]|[1]10908039-10908145[2]|[0]10909103-10909207[2]|[0]10912184-10912294[2]|[0]10913877-10914054[0]|[1]10916407-10916497[1]|[2]10916696-10916777[2]|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atgtccactccagacccacccctgggcggaactcctcggccaggtccttccccgggccctggcccttcccctggagccatgctgggccctagcccgggtccctcgccgggctccgcccacagcatgatggggcccagcccagggccgccctcagcaggacaccccatccccacccaggggcctggagggtaccctcaggacaacatgcaccagatgcacaagcccatggagtccatgcatgagaagggcatgtcggacgacccgcgctacaaccagatgaaaggaatggggatgcggtcagggggccatgctgggatggggcccccgcccagccccatggaccagcactcccaaggttacccctcgcccctgggtggctctgagcatgcctctagtccagttccagccagtggcccgtcttcggggccccagatgtcttccgggccaggaggtgccccgctggatggtgctgacccccaggccttggggcagcagaaccggggcccaaccccatttaaccagaaccagctgcaccagctcagagctcagatcatggcctacaagatgctggccagggggcagcccctccccgaccacctgcagatggcggtgcagggcaagcggccgatgcccgggatgcagcagcagatgccaacgctacctccaccctcggtgtccgcaacaggacccggccctggccctggccctggccccggcccgggtcccggcccggcacctccaaattacagcaggcctcatgATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCGTGTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACGATTTCTGTTCCTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAGCGGACGGAGGAGTCTTCTGCCGTGCAGTACTTCCAGTTTTATGGCTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACAGGCACCTACCAGCGCGCCATCCTGCAAAACCACACCGACTTCAAGGACAAGATCGTTCTTGATGTTGGCTGTGGCTCTGGGATCCTGTCGTTTTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGGAGGCCAGCACCATGGCCCAGCACGCTGAGGTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCGGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHDEDVCVFKCSVSRETECSRVGKQSFIITLGCNSVLIQFATPNDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGTTPSPPPGSHYTSPSENMWNTGSTYNLSSGMAVAGMPTAYDLSSVIASGSSVGHNNLIPLANTGIVNHTHSRMGSIMSTGIVQGSSGAQGSGGGSTSAHYAVNSQFTMGGPAISMASPMSIPTNTMHYGS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach,Ovary,Lung,Uterus_cervix,Bladder,Brain exact TRUE Breast invasive carcinoma,Stomach adenocarcinoma BREAST,STOMACH exact 11097679,11100119|11100119 FALSE,FALSE|FALSE 11024553,11022860|11024553 FALSE,FALSE|FALSE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 1 Yes NSCLC, SCCOHT epithelial TSG frameshift, nonsense, missense, splice_site FALSE NA NA NA NA NA NA NA NA NA 30749 ADAMTS19::SLC27A6 ENSG00000145808.10::ENSG00000113396.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1227 TRUE 2175 TRUE 836 ADAMTS19 ENSG00000145808.10 protein_coding + + chr5:129460281-129738683:+ chr5:129460482:+ chr5:128795974-129074376:+ chr5:128796175:+ SLC27A6 ENSG00000113396.13 protein_coding + + chr5:128538013-129033642:+ chr5:129028345:+ chr5:127873706-128369335:+ chr5:128364038:+ chr5:129500568,chr5:129500565 chr5:129028072,chr5:129028066 NA NA chr5:128836261,chr5:128836258 chr5:128363765,chr5:128363759 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.43Mb] 47 58 47 25.01 ONLY_REF_SPLICE YES_LDAS 0.8134 GT 1.9086 AG 1.231 ENST00000505791.5 1-91 ENST00000506176.1 1455-1860 chr5|+|[0]129460392-129460482[0]<==>chr5|+|[2]129028345-129028442[0]|[1]129029577-129029707[2]|[0]129033106-129033282[2] atggggaagaaccgcgagatgcgcctgactcacatctgctgctgctgcctcctttaccagctggggttcctgtcgaatgggatcgtttcagATGGAAAGGAGAAAATGTCGCAACCACTGAGGTTGCTGATGTTATTGGAATGTTGGATTTCATACAGGAAGCAAACGTCTATGGTGTGGCTATATCAGGTTATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACCAAATACATCTTTAGATTTGGAAAAAGTTTATGAACAAGTTGTAACATTTCTACCAGCTTATGCTTGTCCACGATTTTTAAGAATTCAGGAAAAAATGGAAGCAACAGGAACATTCAAACTATTGAAGCATCAGTTGGTGGAAGATGGATTTAATCCACTGAAAATTTCTGAACCACTTTACTTCATGGATAACTTGAAAAAGTCTTATGTTCTACTGACCAGGGAACTTTATGATCAAATAATGTTAGGGGAAATAAAACTTTAA MGKNREMRLTHICCCCLLYQLGFLSNGIVSDGKEKMSQPLRLLMLLECWISYRKQTSMVWLYQVMKEEQEWLLLF*NQIHL*IWKKFMNKL*HFYQLMLVHDF*EFRKKWKQQEHSNY*SISWWKMDLIH*KFLNHFTSWIT*KSLMFY*PGNFMIK*C*GK*NF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30752 ADAMTS19::SLC27A6 ENSG00000145808.10::ENSG00000113396.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1226 TRUE 2175 TRUE 836 ADAMTS19 ENSG00000145808.10 protein_coding + + chr5:129460281-129738683:+ chr5:129461757:+ chr5:128795974-129074376:+ chr5:128797450:+ SLC27A6 ENSG00000113396.13 protein_coding + + chr5:128538013-129033642:+ chr5:129028345:+ chr5:127873706-128369335:+ chr5:128364038:+ chr5:129500568,chr5:129500565 chr5:129028072,chr5:129028066 NA NA chr5:128836261,chr5:128836258 chr5:128363765,chr5:128363759 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pep_M12B_propep|164-232|8.3e-08^Pep_M12B_propep|280-299|9.7^Reprolysin|333-549|1.2e-22^Reprolysin_5|333-525|2.2e-15^Reprolysin_4|337-378|1.2^Reprolysin_3|360-499|1.2e-12^Peptidase_M10|415-503|8.6e-07^Reprolysin_2|435-505|1.7e-08^ADAMTS_CR_2|442-473|3.6^Reprolysin_4|455-505|1.9e-07^DUF3810|480-499|0.0002^TSP1_ADAMTS|526-532|7.5^TSP1_CCN|526-532|0.34^TSP1_spondin|526-532|3.4^TSP1_ADAMTS|530-556|2.6^ADAMTS_CR_2|565-632|5.5e-22^TSP1_ADAMTS|590-621|4.3^TSP_1|643-691|4.4e-14^TSP1_spondin|643-691|5.1e-08^TSP1_CCN|646-691|1.2e-07^TSP1_ADAMTS|647-691|0.00032^ADAMTS_CR_2-PARTIAL|700-747~|4.1e-05^ADAMTS_CR_3-PARTIAL|729-747~|1.4e-06 none ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.43Mb] 35 85 35 59.99 ONLY_REF_SPLICE YES_LDAS 1.0731 GT 1.6402 AG 1.231 ENST00000274487.9 1-747 ENST00000506176.1 1455-1860 chr5|+|[0]129460392-129460482[0]|[1]129461102-129461757[2]<==>chr5|+|[2]129028345-129028442[0]|[1]129029577-129029707[2]|[0]129033106-129033282[2] atggggaagaaccgcgagatgcgcctgactcacatctgctgctgctgcctcctttaccagctggggttcctgtcgaatgggatcgtttcagagctgcagttcgcccccgaccgcgaggagtgggaagtcgtgtttcctgcgctctggcgccgggagccggtggacccggctggcggcagcgggggcagcgcggacccgggctgggtgcgcggcgttgggggcggcggaagcgcccgggcgcaggctgccggcagctcacgcgaggtgcgctctgtggctccggtgcctttggaggagcccgtggagggccgatcagagtcccggctccggcccccgccgccgtcggagggtgaggaggacgaggagctcgagtcgcaggagctgccgcggggatccagcggggctgccgccttgtccccgggcgccccggcctcgtggcagccgccgcctcccccgcagccgcccccgtccccgcccccggcccagcatgccgagccggatggcgacgaagtgttgctgcggatcccggccttctctcgggacctgtacctgctgctccggagagacggccgcttcctggcgccgcgcttcgcagtggaacagcggccaaatcccggccccggccccacgggggcagcatccgccccgcaacctcccgcgccaccagacgcaggctgcttctacaccggagctgtgctgcggcaccctggctcgctggcttctttcagcacctgtggaggtggcctgATGGAAAGGAGAAAATGTCGCAACCACTGAGGTTGCTGATGTTATTGGAATGTTGGATTTCATACAGGAAGCAAACGTCTATGGTGTGGCTATATCAGGTTATGAAGGAAGAGCAGGAATGGCTTCTATTATTTTAAAACCAAATACATCTTTAGATTTGGAAAAAGTTTATGAACAAGTTGTAACATTTCTACCAGCTTATGCTTGTCCACGATTTTTAAGAATTCAGGAAAAAATGGAAGCAACAGGAACATTCAAACTATTGAAGCATCAGTTGGTGGAAGATGGATTTAATCCACTGAAAATTTCTGAACCACTTTACTTCATGGATAACTTGAAAAAGTCTTATGTTCTACTGACCAGGGAACTTTATGATCAAATAATGTTAGGGGAAATAAAACTTTAA MGKNREMRLTHICCCCLLYQLGFLSNGIVSELQFAPDREEWEVVFPALWRREPVDPAGGSGGSADPGWVRGVGGGGSARAQAAGSSREVRSVAPVPLEEPVEGRSESRLRPPPPSEGEEDEELESQELPRGSSGAAALSPGAPASWQPPPPPQPPPSPPPAQHAEPDGDEVLLRIPAFSRDLYLLLRRDGRFLAPRFAVEQRPNPGPGPTGAASAPQPPAPPDAGCFYTGAVLRHPGSLASFSTCGGGLMERRKCRNH*GC*CYWNVGFHTGSKRLWCGYIRL*RKSRNGFYYFKTKYIFRFGKSL*TSCNISTSLCLSTIFKNSGKNGSNRNIQTIEASVGGRWI*STENF*TTLLHG*LEKVLCSTDQGTL*SNNVRGNKTL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30753 AHCYL1::RAD51C ENSG00000168710.18::ENSG00000108384.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1236 FALSE NA FALSE NA AHCYL1 ENSG00000168710.18 protein_coding + + chr1:109984765-110023742:+ chr1:109985172:+ chr1:110527387-110566364:+ chr1:110527794:+ RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58734118:+ chr17:56769934-56812972:+ chr17:56811479:+ chr1:110005188,chr1:110005188 chr17:58733578,chr17:58733575 NA NA chr1:110547810,chr1:110547810 chr17:56810939,chr17:56810936 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Utp11-PARTIAL|17-120~|0.00016^Big_3_5|26-90|9.2e-05^SR-25|33-105|0.00023^AdoHcyase-PARTIAL|104-120~|1.2e-67 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr17] 34 6 34 6 ONLY_REF_SPLICE YES_LDAS 0.4519 GT 1.5656 AG 1.9899 ENST00000369799.10 1-120 ENST00000697694.1 676-780 chr1|+|[0]109985053-109985172[2]<==>chr17|+|[0]58734118-58734222[2] atgtcgatgcctgacgcgatgccgctgcccggggtcggggaggagctgaagcaggccaaggagatcgaggacgccgagaagtactccttcatggccaccgtcaccaaggcgcccaagaagCCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAA MSMPDAMPLPGVGEELKQAKEIEDAEKYSFMATVTKAPKKPQGFRDTVVTSACSLQTEGSLSTRKRSRDPEEEL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 30754 SMARCC1::EMCN ENSG00000173473.11::ENSG00000164035.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47738029:- chr3:47626759-47823596:- chr3:47779519:- EMCN ENSG00000164035.10 protein_coding - - chr4:100395341-100880126:- chr4:100570325:- chr4:101316498-101801283:- chr4:101491482:- chr3:47737025,chr3:47737033 chr4:100603226,chr4:100603231 NA NA chr3:47778515,chr3:47778523 chr4:101524383,chr4:101524388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr4] 33 17 33 17 ONLY_REF_SPLICE YES_LDAS 0.5648 GT 1.8892 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30755 ATXN7L3::FAM171A2 ENSG00000087152.16::ENSG00000161682.15 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1238 FALSE NA FALSE NA ATXN7L3 ENSG00000087152.16 protein_coding - - chr17:44191805-44200113:- chr17:44198020:- chr17:42269173-42277481:- chr17:42275388:- FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44356588:- chr17:42430583-42441221:- chr17:42433956:- chr17:44198002,chr17:44198014 chr17:44358206,chr17:44358215 NA NA chr17:42275370,chr17:42275382 chr17:42435574,chr17:42435583 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none FAM171A1-2-B_C-PARTIAL|~440-824|1.6e-156 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.15Mb] 32 9 32 9 ONLY_REF_SPLICE YES_LDAS 0.4632 GT 1.6729 AG 1.6402 ENST00000587097.6 1-51 ENST00000293443.12 440-2481 chr17|-|[2]44198020-44198070[0]<==>chr17|-|[2]44353733-44355191[2]|[1]44355715-44355841[1]|[0]44355958-44356074[1]|[0]44356173-44356352[1]|[0]44356430-44356588[1] atgaaaatggaggaaatgtctttgtctggcctggataacagcaaactagagGTGCCCGCTCCCAGCCCTTGGTGCAGTTCCAGCGCCGGGCTGCCCGCCTGCCTGTCAGCTCCACCTACAGCCAGCTCTGGGCGTCACTTACGCCTGCCAGCACCCAGCAGGAAATGCGGGCTTTCCCTGCCTTCCTGGGCACTGAGGCCTCCAGCTCAGGCAATGGCTCCTGGCTGGAGCTGATGCCCCTGACTGCTGTGAGCGTGCACCTGCTGACAGGTAATGGGACAGAGGTGCCGCTCTCAGGCCCCATTCACCTGTCCCTGCCCGTGCCCTCCGAGACTCGTGCCCTCACCGTGGGCACCAGCATTCCAGCCTGGAGATTTGACCCCAAGAGTGGGCTGTGGGTGCGCAATGGCACTGGTGTAATCCGGAAGGAAGGCCGGCAGCTCTACTGGACCTTCGTCTCCCCCCAGCTGGGGTACTGGGTGGCCGCCATGGCCTCCCCCACGGCTGGGCTGGTCACCATCACGTCGGGCATCCAGGACATCGGCACCTACCACACCATCTTCTTGCTCACCATCCTGGCAGCCCTGGCCCTGCTGGTGCTTATCCTGCTGTGTCTGCTCATCTACTACTGCCGGAGGCGCTGCCTGAAGCCGAGGCAACAGCACCGCAAGCTGCAGCTCTCGGGGCCCTCTGACGGTAACAAACGAGACCAGGCCACCTCGATGTCCCAGCTCCACCTCATCTGTGGGGGACCCCTGGAACCCGCCCCGTCGGGGGACCCCGAGGCTCCGCCTCCAGGCCCCCTCCACTCGGCCTTCTCCAGCTCCCGGGACTTGGCCTCCTCCCGGGATGACTTCTTCCGCACCAAGCCGCGCTCTGCCAGCCGCCCGGCCGCCGAGCCTTCGGGTGCCCGCGGGGGCGAGAGCGCCGGGCTCAAGGGCGCTCGCTCGGCCGAGGGCCCCGGCGGGCTGGAGCCCGGCCTAGAGGAGCACCGGCGGGGGCCCTCGGGGGCTGCGGCCTTCCTGCACGAGCCGCCCTCGCCGCCGCCGCCCTTCGACCACTACCTGGGCCACAAGGGGGCGGCCGAGGGCAAGACCCCCGACTTCCTGCTGTCGCAGTCGGTGGACCAGCTGGCGCGGCCGCCGTCGCTGGGCCAGGCGGGGCAGCTCATCTTCTGCGGCTCCATCGACCACCTCAAGGACAACGTCTACCGCAACGTCATGCCCACCCTGGTGATCCCCGCGCACTACGTGCGCCTCGGCGGCGAGGCGGGCGCCGCCGGCGTGGGCGACGAGCCGGCCCCGCCGGAGGGCACGGCACCCGGCCCGGCGCGCGCTTTTCCCCAGCCCGACCCCCAGCGCCCGCAGATGCCGGGCCACTCGGGCCCGGGGGGCGAGGGCGGCGGGGGCGGCGGCGAGGGCTGGGGGGCCGGGCGCGCGGCGCCCGTCAGTGGCTCAGTCACCATCCCTGTGCTATTCAACGAGTCCACCATGGCGCAGCTCAACGGGGAGCTGCAGGCCCTGACCGAGAAGAAGCTGCTGGAACTGGGCGTGAAGCCGCACCCGCGCGCCTGGTTCGTGTCCCTCGACGGGCGCTCCAACTCGCAAGTGCGCCACTCTTACATCGACCTGCAGGCGGGCGGCGGGGCACGCAGCACCGACGCCAGCCTGGACTCGGGCGTAGATGTCCACGAGGCGCGGCCCGCGCGCCGCCGGCCCGCGAGGGAGGAGCGGGAGCGCGCCCCGCCTGCCGCGCCGCCGCCGCCGCCCGCGCCCCCGCGCCTGGCGCTCAGCGAGGACACGGAGCCCAGCAGCAGCGAGAGCCGCACGGGCCTCTGCTCTCCGGAGGACAACTCGCTGACGCCGCTGCTGGACGAGGTGGCGGCGCCCGAGGGCCGGGCGGCCACGGTACCCCGGGGGCGGGGCCGCAGCCGCGGGGACAGCTCCCGCAGCAGCGCCAGCGAGCTGCGGCGCGACTCGCTCACCAGCCCGGAGGACGAGCTGGGGGCGGAGGTGGGCGACGAGGCGGGAGACAAGAAGAGCCCGTGGCAGCGGCGGGAGGAGCGGCCGCTGATGGTGTTCAACGTCAAGTAG MKMEEMSLSGLDNSKLEVPAPSPWCSSSAGLPACLSAPPTASSGRHLRLPAPSRKCGLSLPSWALRPPAQAMAPGWS*CP*LL*ACTC*QVMGQRCRSQAPFTCPCPCPPRLVPSPWAPAFQPGDLTPRVGCGCAMALV*SGRKAGSSTGPSSPPSWGTGWPPWPPPRLGWSPSRRASRTSAPTTPSSCSPSWQPWPCWCLSCCVCSSTTAGGAA*SRGNSTASCSSRGPLTVTNETRPPRCPSSTSSVGDPWNPPRRGTPRLRLQAPSTRPSPAPGTWPPPGMTSSAPSRALPAARPPSLRVPAGARAPGSRALARPRAPAGWSPA*RSTGGGPRGLRPSCTSRPRRRRPSTTTWATRGRPRARPPTSCCRSRWTSWRGRRRWARRGSSSSAAPSTTSRTTSTATSCPPW*SPRTTCASAARRAPPAWATSRPRRRARHPARRALFPSPTPSARRCRATRARGARAAGAAARAGGPGARRPSVAQSPSLCYSTSPPWRSSTGSCRP*PRRSCWNWA*SRTRAPGSCPSTGAPTRKCATLTSTCRRAAGHAAPTPAWTRA*MSTRRGPRAAGPRGRSGSAPRLPRRRRRPRPRAWRSARTRSPAAARAARASALRRTTR*RRCWTRWRRPRAGRPRYPGGGAAAAGTAPAAAPASCGATRSPARRTSWGRRWATRRETRRARGSGGRSGR*WCSTSS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30758 ABCA5::ENSG00000291067 ENSG00000154265.16::ENSG00000291067.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ABCA5 ENSG00000154265.16 protein_coding - - chr17:69244311-69327244:- chr17:69313092:- chr17:67240452-67323385:- chr17:67309233:- ENSG00000291067 ENSG00000291067.1 lncRNA - - chr20:58228940-58309494:- chr20:58272875:- chr20:56803996-56884550:- chr20:56847931:- chr17:69309478,chr17:69309486 chr20:58273303,chr20:58273306 NA NA chr17:67305619,chr17:67305627 chr20:56848359,chr20:56848362 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 26 21 26 18.83 ONLY_REF_SPLICE YES_LDAS 0.5064 GT 1.9329 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30761 SULF2::PRICKLE2 ENSG00000196562.16::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1242 TRUE 2189 TRUE 845 SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47785343:- chr20:46284941-46415360:- chr20:46414087:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64099925:- chr3:64077912-64431152:- chr3:64085601:- chr20:47782922,chr20:47782927 chr3:64116501,chr3:64116503 NA NA chr20:46411666,chr20:46411671 chr3:64102177,chr3:64102179 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SULF2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr3] 23 13 23 7.12 ONLY_REF_SPLICE YES_LDAS 0.3402 GT 1.3996 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30763 BCAS4::ZMYND8 ENSG00000124243.19::ENSG00000101040.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1252 FALSE NA FALSE NA BCAS4 ENSG00000124243.19 protein_coding + + chr20:50794894-50877177:+ chr20:50795173:+ chr20:49411431-49493714:+ chr20:49411710:+ ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47221474:- chr20:45837859-45985633:- chr20:45850125:- chr20:50797091 chr20:47242092 NA NA chr20:49413628 chr20:45870836 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["BCAS4:Oncogene"];["ZMYND8:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:3.44Mb] 21 16 21 15.44 ONLY_REF_SPLICE YES_LDAS 0.4116 GT 1.6402 AG 1.7968 ENST00000358791.9 1-180 ENST00000262975.8 3059-3507 chr20|+|[0]50794994-50795173[2]<==>chr20|-|[2]47210761-47210897[1]|[0]47212642-47212725[1]|[0]47220258-47220324[0]|[2]47221314-47221474[1] atgcagcggaccgggggcggggctccgaggcccgggcgcaaccacgggctcccaggcagcctccgccagccggaccccgtcgccctcctgatgctgctcgtggacgctgatcagccggagcccatgcgcagcggggcgcgcgagctcgcgctcttcctgacccccgagcctggggccgagCTACTGCTCCTCAGCAGGAAGCGGATGCTGAGGTGAACACAGAAACACTAAATAAGTCCTCCCAGGGGAGCTCCTCGAGCACACAATCAGCACCTTCAGAAACGGCCAGCGCCTCCAAAGAGAAGGAGACGTCAGCTGAGAAAAGCAAGGAGAGTGGCTCGACCCTTGACCTTTCTGGCTCCAGAGAGACGCCCTCCTCCATTCTCTTAGGCTCCAACCAAGGCTCTGTTAGCAAAAGGTGTGACAAGCAACCTGCCTATGCCCCAACCACCACAGACCACCAGCCGCACCCCAACTACCCCGCCCAGAAGTACCATTCCCGGAGTAATAAATCCAGTTGGAGCAGCAGTGATGAGAAGAGGGGATCGACACGTTCCGATCACAACACCAGTACCAGCACGAAGAGCCTCCTCCCGAAAGAGTCTCGGCTGGACACCTTCTGGGACTAG MQRTGGGAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAELLLLSRKRMLR*TQKH*ISPPRGAPRAHNQHLQKRPAPPKRRRRQLRKARRVARPLTFLAPERRPPPFS*APTKALLAKGVTSNLPMPQPPQTTSRTPTTPPRSTIPGVINPVGAAVMRRGDRHVPITTPVPARRASSRKSLGWTPSGT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30764 USP32::APPBP2 ENSG00000170832.13::ENSG00000062725.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1234 FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60301599:- chr17:58254688-58499831:- chr17:58378960:- APPBP2 ENSG00000062725.10 protein_coding - - chr17:60443158-60526242:- chr17:60460787:- chr17:58520519-58603603:- chr17:58538148:- chr17:60299266,chr17:60299271 chr17:60461252,chr17:60461254 NA NA chr17:58376627,chr17:58376632 chr17:58538613,chr17:58538615 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["USP32:Oncogene"];["YOSHIHARA_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_REARRANGEMENT:-:[20679] 21 30 21 29.16 ONLY_REF_SPLICE YES_LDAS 0.5666 GT 1.3753 AG 1.9656 ENST00000588898.1 1-340 ENST00000083182.8 937-1758 chr17|-|[0]60301599-60301704[0]|[2]60345481-60345608[1]|[0]60422246-60422351[0]<==>chr17|-|[2]60447581-60447834[1]|[0]60451880-60452045[0]|[2]60454302-60454492[1]|[0]60456296-60456381[2]|[1]60460663-60460787[0] atgtgcggggtcgagcgaagactttggcagagcgcacagcaggccaggagaggctggcgccccttctcccaagaatactgtcagatgctgatcctgacaccacctgttacagatgtagagctaaaacgactgaaggatgctttcaagaggacctgtggactctcatattacatgggccagcactgcttcatccgggaagtgcttggggatggagtgcctccaaaggttgctgaggtgatttactgttcttttggtggaacatccaaagggctgcacttcaataatttaatagttggacttgtcctccttacaagaggcaaagatgaagagaaagcaaaatGCAGCCCTTGACATTAGACAGTCAGTGTTTGGTGGCAAAAATATCCACGTAGCAACAGCTCATGAAGATTTGGCCTACTCTTCTTATGTCCACCAGTATAGCTCTGGGAAATTTGACAATGCACTATTTCATGCAGAAAGAGCTATTGGTATCATTACCCACATCCTACCTGAAGATCATCTTCTTTTGGCTTCTTCAAAGAGGGTGAAAGCACTTATTTTAGAGGAGATTGCAATTGATTGTCATAATAAGGAAACTGAACAGAGGCTGCTTCAAGAAGCTCATGATTTGCACCTGTCTTCACTCCAACTAGCTAAAAAAGCTTTTGGGGAATTTAATGTACAGACTGCAAAACACTATGGAAACCTTGGAAGACTTTATCAGTCAATGAGAAAATTTAAGGAAGCTGAAGAAATGCACATCAAAGCAATTCAGATTAAAGAACAACTTCTTGGTCAAGAAGATTATGAAGTAGCCCTTTCAGTGGGACATCTGGCTTCTTTATATAATTATGACATGAATCAGTATGAAAATGCTGAGAAACTTTATTTGCGATCTATAGCAATTGGGAAGAAACTTTTTGGTGAGGGCTACAGTGGACTAGAATATGATTATCGAGGTCTCATTAAACTTTACAACTCCATTGGAAATTACGAGAAAGTGTTTGAATATCACAATGTTCTGTCTAACTGGAACCGGTTGCGAGATCGGCAATATTCAGTGACAGATGCTCTTGAAGATGTCAGCACCAGCCCCCAGTCCACTGAAGAAGTGGTGCAGTCCTTCCTGATTTCTCAGAATGTCGAGGGACCGAGCTGCTGA MCGVERRLWQSAQQARRGWRPFSQEYCQMLILTPPVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAEVIYCSFGGTSKGLHFNNLIVGLVLLTRGKDEEKAKCSP*H*TVSVWWQKYPRSNSS*RFGLLFLCPPV*LWEI*QCTISCRKSYWYHYPHPT*RSSSFGFFKEGESTYFRGDCN*LS**GN*TEAASRSS*FAPVFTPTS*KSFWGI*CTDCKTLWKPWKTLSVNEKI*GS*RNAHQSNSD*RTTSWSRRL*SSPFSGTSGFFI*L*HESV*KC*ETLFAIYSNWEETFW*GLQWTRI*LSRSH*TLQLHWKLRESV*ISQCSV*LEPVARSAIFSDRCS*RCQHQPPVH*RSGAVLPDFSECRGTELL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 58372044 FALSE 58577848 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30765 MYO6::SENP6 ENSG00000196586.17::ENSG00000112701.18 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1233 FALSE NA FALSE NA MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75749423:+ chr6:76458918-76629254:+ chr6:76459140:+ SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75678583:+ chr6:76311225-76427997:+ chr6:76388299:+ chr6:75770246,chr6:75770244 chr6:75678285,chr6:75678280 NA NA chr6:76479963,chr6:76479961 chr6:76388001,chr6:76387996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.03Mb];LOCAL_REARRANGEMENT:+:[30914] 21 34 21 34 ONLY_REF_SPLICE YES_LDAS 0.6213 GT 1.6729 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Uterine Carcinosarcoma LUNG,LUNG,UTERUS,UTERUS,BREAST,HEAD_AND_NECK,UTERUS exact 76459140|76459140,76459140,76459140,76459140|76459140|76459140,76459140|76459140,76459140,76527381 TRUE|TRUE,TRUE,TRUE,TRUE|TRUE|TRUE,TRUE|TRUE,TRUE,FALSE 76385151|76385576,76405520,76405520,76423229|76421044|76425101,76405520|76423391,76419243,76421044 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,YES,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30766 MYO9B::FCHO1 ENSG00000099331.14::ENSG00000130475.16 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1231 FALSE NA FALSE NA MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17102557:+ chr19:17186587-17325346:+ chr19:17213367:+ FCHO1 ENSG00000130475.16 protein_coding + + chr19:17747718-17788568:+ chr19:17770425:+ chr19:17858527-17899377:+ chr19:17881234:+ chr19:17115583,chr19:17115582 chr19:17769208,chr19:17769204 NA NA chr19:17226393,chr19:17226392 chr19:17880017,chr19:17880013 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RA|18-113|2.3e-17^Myosin_head|149-676|1.1e-185^AAA_16|228-250|0.00093^nSTAND3|232-256|0.00015^AAA_22|232-254|0.00026^RA|319-363|2^RhoGAP|376-410|0.95^AAA_16|737-764|1.5^Myosin_head-PARTIAL|810-840~|5.7e-36 FCH|423-435|1.7^muHD|626-697|1.7e-16^muHD|742-928|5.8e-43 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.53Mb] 21 55 21 55 ONLY_REF_SPLICE YES_LDAS 0.8585 GT 1.7465 AG 1.6895 ENST00000682292.1 1-840 ENST00000699212.1 337-2793 chr19|+|[0]17101718-17102557[2]<==>chr19|+|[0]17770425-17770577[2]|[0]17770792-17770896[2]|[0]17772457-17772555[2]|[0]17772645-17772741[0]|[1]17774239-17774283[0]|[1]17774394-17774478[1]|[2]17775056-17775080[2]|[0]17775456-17775513[0]|[1]17775983-17776161[2]|[0]17776247-17776271[0]|[1]17776635-17776686[1]|[2]17778137-17778228[0]|[1]17778609-17778884[0]|[1]17781231-17781343[2]|[0]17781452-17781539[0]|[1]17781712-17781820[1]|[2]17783017-17783172[1]|[2]17783286-17783408[1]|[2]17784103-17784235[2]|[0]17784725-17784924[1]|[2]17786574-17786629[0]|[1]17787682-17787846[0]|[1]17788284-17788306[2] atgagtgtgaaagaggcaggcagctcgggccgccgggagcaggcggcctaccacctgcacatctacccccagctgtccaccaccgagagccaggcctcgtgccgcgtgactgccaccaaggacagcaccacctcggacgtcatcaaggacgccattgccagcctgcggctggacggcaccaaatgttatgtgctggtggaggtcaaagagtcgggaggcgaggaatgggtgctggacgccaacgactcgcctgtgcaccgggtgctgctatggccccggcgggcacaggacgagcaccctcaggaggatggctactacttcctgctgcaggagcgcaacgcagatggaaccatcaagtacgtgcatatgcagctggtggcgcaggccacagccacccggcgcctagtggagcgtggcctcctgccacggcagcaggcggactttgatgacctgtgtaacctccccgagctaaccgagggcaacctcctgaagaacctcaagcaccgcttcctgcaacaaaagatctacacgtacgcggggagcatcctggtggccatcaacccctttaagttcctgcccatctacaaccccaagtacgtgaagatgtatgagaaccagcagctgggcaagctggagccacacgtcttcgcgctggccgacgtggcctactacaccatgctcaggaagcgcgtgaaccagtgcatcgtgatctcgggtgagagcggctccggcaagacccagagcaccaacttcctcatccactgcctcaccgccctcagccagaagggctacgccagcggcgtcgagaggaccatcctgggtgctggccctgtgctggagTGCAAGGAGGAAGTGGTGAGCACCTTGGATGCTGTGCAGGTACTCTCGGGCGTCAGCCAGCTCCTGCCCAAGTCCCGCGAGAACTACCTGAACCGTTGCATGGACCAGGAGCGGCTGCGGAGGGAGAGTACCAGCCAGAAGGAGATGGACAAGGCGGAGACTAAAACCAAGAAGGCGGCAGAGAGCCTGCGGCGCTCAGTGGAAAAATACAACTCAGCCCGAGCTGACTTTGAGCAGAAGATGCTGGACTCAGCCCTGCGCTTCCAAGCCATGGAGGAGACACACCTGAGGCACATGAAGGCACTGCTGGGCTCATATGCTCACTCGGTGGAGGACACGCACGTGCAGATTGGGCAGGTGCATGAGGAATTTAAGCAGAACATCGAGAACGTCAGCGTGGAGATGCTACTCAGGAAGTTTGCAGAGAGTAAGGGCACAGGCCGGGAGAAGCCTGGACCTCTGGACTTCGAGGCATACAGTGCGGCTGCCCTGCAGGAAGCGATGAAACGTTTGCGGGGAGCCAAGGCCTTTCGCCTTCCAGGACTAAGCCGGCGGGAGCGGGAGCCAGAGCCACCTGCAGCTGTAGATTTCCTGGAGCCCGATTCAGGGACATGTCCAGAGGTGGATGAAGAAGGTTTCACTGTCCGGCCTGATGTGACCCAGAACAGCACGGCCGAGCCCTCCCGTTTCTCGTCCAGCGACTCCGACTTCGACGATGAAGAGCCCCGCAAGTTCTATGTGCACATCAAGCCTGCCCCGGCCCGGGCTCCAGCCTGCAGCCCCGAGGCAGCAGCGGCACAGCTCAGGGCCACCGCGGGCAGCCTCATCCTTCCTCCTGGCCCAGGGGGCACCATGAAACGCCATTCTTCACGGGACGCTGCTGGGAAACCCCAGAGACCTCGGTCTGCCCCCAGAACCAGCAGCTGTGCAGAGAGATTGCAGTCAGAGGAGCAGGTGTCCAAGAACCTCTTTGGGCCGCCCCTGGAGTCAGCCTTTGACCACGAAGATTTTACAGGCTCTAGCAGCCTGGGCTTCACCTCCAGCCCCTCCCCTTTCTCCTCCTCGTCGCCCGAAAACGTGGAGGATTCCGGCCTGGACTCTCCGTCCCACGCGGCACCTGGCCCCTCCCCAGATTCCTGGGTCCCCCGCCCAGGCACCCCGCAGAGCCCGCCCAGCTGTAGGGCGCCACCCCCAGAGGCCAGGGGTATCCGGGCACCGCCTCTGCCAGACTCGCCGCAGCCCCTCGCCTCGTCTCCAGGCCCCTGGGGGCTGGAGGCCTTGGCCGGAGGAGACCTGATGCCTGCACCTGCTGACCCCACAGCCAGGGAGGGCCTGGCAGCCCCACCCAGGAGACTTCGCTCTAGGAAGGTGTCCTGCCCTCTCACACGTAGCAATGGGGACCTGTCTCGTTCCCTGAGCCCCTCCCCACTGGGCTCTTCAGCCGCCAGCACTGCCTTGGAACGGCCCAGCTTCTTATCCCAGACAGGACACGGAGTCTCCCGGGGTCCGAGCCCTGTGGTCCTGGGCTCCCAGGATGCCCTGCCCATAGCCACAGCCTTCACAGAGTATGTCCACGCCTACTTCCGTGGCCACAGCCCCAGCTGCCTGGCTCGAGTAACTGGGGAGCTGACCATGACCTTCCCTGCTGGCATCGTGCGTGTGTTCAGCGGGACCCCACCACCACCTGTCCTCAGCTTCCGGCTTGTACACACAACCGCTATTGAGCACTTCCAGCCCAACGCCGATCTGCTGTTCAGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGCGTCATCTCGGCTCACTGCAACTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGTGACCCCTCCCAGAGTGACCCTGAGACCAAAGACTTCTGGCTCAACATGGCAGCTCTGACCGAAGCCCTGCAGCGCCAGGCAGAGCAGAACCCCACTGCCTCCTACTACAACGTGGTGCTGCTGCGATACCAGTTCTCCCGCCCGGGTCCCCAGTCTGTGCCTCTGCAGCTCAGTGCCCACTGGCAGTGTGGAGCCACCCTCACCCAGGTCTCAGTGGAGTACGGCTACCGGCCCGGTGCCACGGCTGTGCCCACACCACTCACGAACGTCCAGATCCTGCTGCCTGTGGGGGAGCCTGTGACCAACGTCCGCTTGCAGCCGGCTGCCACCTGGAACCTGGAGGAGAAGCGGCTCACTTGGAGGCTTCCAGATGTGTCCGAGGCAGGCGGTTCTGGCCGCCTCTCTGCCAGCTGGGAGCCGCTCTCAGGGCCCAGCACACCCAGCCCCGTGGCTGCACAGTTCACCAGCGAGGGGACCACTCTGTCGGGCGTGGACTTGGAACTGGTGGGCAGCGGTTACCGCATGTCGCTGGTGAAGAGGAGGTTTGCCACAGGGATGTACCTGGTGAGCTGCTGA MSVKEAGSSGRREQAAYHLHIYPQLSTTESQASCRVTATKDSTTSDVIKDAIASLRLDGTKCYVLVEVKESGGEEWVLDANDSPVHRVLLWPRRAQDEHPQEDGYYFLLQERNADGTIKYVHMQLVAQATATRRLVERGLLPRQQADFDDLCNLPELTEGNLLKNLKHRFLQQKIYTYAGSILVAINPFKFLPIYNPKYVKMYENQQLGKLEPHVFALADVAYYTMLRKRVNQCIVISGESGSGKTQSTNFLIHCLTALSQKGYASGVERTILGAGPVLECKEEVVSTLDAVQVLSGVSQLLPKSRENYLNRCMDQERLRRESTSQKEMDKAETKTKKAAESLRRSVEKYNSARADFEQKMLDSALRFQAMEETHLRHMKALLGSYAHSVEDTHVQIGQVHEEFKQNIENVSVEMLLRKFAESKGTGREKPGPLDFEAYSAAALQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFLEPDSGTCPEVDEEGFTVRPDVTQNSTAEPSRFSSSDSDFDDEEPRKFYVHIKPAPARAPACSPEAAAAQLRATAGSLILPPGPGGTMKRHSSRDAAGKPQRPRSAPRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAPPPEARGIRAPPLPDSPQPLASSPGPWGLEALAGGDLMPAPADPTAREGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPSPLGSSAASTALERPSFLSQTGHGVSRGPSPVVLGSQDALPIATAFTEYVHAYFRGHSPSCLARVTGELTMTFPAGIVRVFSGTPPPPVLSFRLVHTTAIEHFQPNADLLFRDGVLLCRPGWSAMASSRLTATPPPGFKQFSCLSLPSSWDYSDPSQSDPETKDFWLNMAALTEALQRQAEQNPTASYYNVVLLRYQFSRPGPQSVPLQLSAHWQCGATLTQVSVEYGYRPGATAVPTPLTNVQILLPVGEPVTNVRLQPAATWNLEEKRLTWRLPDVSEAGGSGRLSASWEPLSGPSTPSPVAAQFTSEGTTLSGVDLELVGSGYRMSLVKRRFATGMYLVSC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30767 SULF2::PRICKLE2 ENSG00000196562.16::ENSG00000163637.13 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1243 TRUE 2189 TRUE 845 SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47786048:- chr20:46284941-46415360:- chr20:46414792:- PRICKLE2 ENSG00000163637.13 protein_coding - - chr3:64092236-64445476:- chr3:64099925:- chr3:64077912-64431152:- chr3:64085601:- chr20:47782922,chr20:47782927 chr3:64116501,chr3:64116503 NA NA chr20:46411666,chr20:46411671 chr3:64102177,chr3:64102179 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SULF2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr3] 19 13 19 5.88 ONLY_REF_SPLICE YES_LDAS 0.281 GT 1.8295 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30768 TTC6::MIPOL1 ENSG00000139865.17::ENSG00000151338.21 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1246 FALSE NA FALSE NA TTC6 ENSG00000139865.17 protein_coding + + chr14:37595629-38041442:+ chr14:37596008:+ chr14:38064834-38510647:+ chr14:38065213:+ MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37564219:+ chr14:37667099-38048330:+ chr14:38033424:+ chr14:37597658,chr14:37597658 chr14:37562866,chr14:37562863 NA NA chr14:38066863,chr14:38066863 chr14:38032071,chr14:38032068 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.04Mb];LOCAL_REARRANGEMENT:+:[43486] 18 7 18 7 ONLY_REF_SPLICE YES_LDAS 0.2824 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate,Breast exact TRUE Lung squamous cell carcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Lung squamous cell carcinoma,Prostate adenocarcinoma,Prostate adenocarcinoma LUNG,LUNG,LUNG,LUNG,LUNG,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,PROSTATE,LUNG,PROSTATE,LUNG,PROSTATE,PROSTATE no_match 38075947,38075947|38075947|38065213,38065213,38075947|38075947|38075947|38075947,38092208|38075947,38092208|38075947|38065213|38075947,38075947|38065213|38075947,38075947|38075947|38065213,38075947|38075947|38065213|38092208,38065213,38065213|38075947,38092208|38075947,38075947|38075947|38092208|38065213,38065213,38075947|38075947|38065213|38065213,38075947,38075947|38065213|38075947,38075947|38075947 FALSE,FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|TRUE|FALSE,TRUE,TRUE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|TRUE,TRUE,FALSE|FALSE|TRUE|TRUE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE 38016110,38016110|37969113|37969113,38016110,37777261|37892060|37838722|37969113,37838722|37838722,37892060|37892060|37892060|37969113,37969113|37969113|38016110,37969113|38016110|37969113,37969113|38016110|37969113|37838722,37969113,37892060|37892060,38016110|38016110,37969113|38016110|38016110|37969113,37716308,37969113|38016110|37969113|38016110,37838722,37969113|37969113|38016110,37969113|38016110 FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY NA,NA,NA,NA,In-frame,In-frame,NA,NA,NA,NA,NA,Out-of-frame,NA,NA,NA,NA,NA,NA TRUE Breast,Breast BREAST,BREAST exact 37623003,37725002 FALSE,FALSE 37422855,37369517 FALSE,FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30769 ATP1A1::ZFP64 ENSG00000163399.16::ENSG00000020256.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1241 FALSE NA FALSE NA ATP1A1 ENSG00000163399.16 protein_coding + + chr1:116372668-116410261:+ chr1:116396734:+ chr1:116915290-116952883:+ chr1:116939356:+ ZFP64 ENSG00000020256.20 protein_coding - - chr20:52051663-52204308:- chr20:52052132:- chr20:50668202-50820847:- chr20:50668671:- chr1:116397001,chr1:116397002 chr20:52063699,chr20:52063698 NA NA chr1:116939623,chr1:116939624 chr20:50680238,chr20:50680237 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cation_ATPase_N|44-111|5.6e-19^Cation_ATPase_C|100-147|0.49^E1-E2_ATPase|102-135|2^E1-E2_ATPase|164-354|4.3e-48^Cation_ATPase_C|304-311|7^Hydrolase|372-729|2.4e-14^Cation_ATPase|427-521|1.3e-30^HAD|598-636|0.00026^Hydrolase_3|601-633|0.01^HAD|709-726|0.49^Hydrolase_3|712-758|2.4e-07^E1-E2_ATPase|786-813|0.3^Cation_ATPase_C|799-1008|2.5e-43^Cation_ATPase|948-969|2.1 none ["ZFP64:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr20] 17 18 17 18 ONLY_REF_SPLICE YES_LDAS 0.3953 GT 1.8062 AG 1.5628 ENST00000537345.5 1-1973 ENST00000371518.6 1229-1248 chr1|+|[0]116374230-116374241[2]|[0]116384014-116384124[2]|[0]116384783-116384842[2]|[0]116387288-116387491[2]|[0]116388131-116388244[2]|[0]116388638-116388772[2]|[0]116388902-116389019[0]|[1]116389439-116389707[2]|[0]116390213-116390411[0]|[1]116390782-116390891[2]|[0]116392854-116392988[2]|[0]116393531-116393723[0]|[1]116395110-116395285[2]|[0]116396598-116396734[1]<==>chr20|-|[2]52052113-52052132[1] atggcctttaaggttggacgtgataagtatgagcctgcagctgtttcagaacaaggtgataaaaagggcaaaaagggcaaaaaagacagggacatggatgaactgaagaaagaagtttctatggatgatcataaacttagccttgatgaacttcatcgtaaatatggaacagacttgagccggggattaacatctgctcgtgcagctgagatcctggcgcgagatggtcccaacgccctcactccccctcccactactcctgaatggatcaagttttgtcggcagctctttggggggttctcaatgttactgtggattggagcgattctttgtttcttggcttatagcatccaagctgctacagaagaggaacctcaaaacgataatctgtacctgggtgtggtgctatcagccgttgtaatcataactggttgcttctcctactatcaagaagctaaaagttcaaagatcatggaatccttcaaaaacatggtccctcagcaagcccttgtgattcgaaatggtgagaaaatgagcataaatgcggaggaagttgtggttggggatctggtggaagtaaaaggaggagaccgaattcctgctgacctcagaatcatatctgcaaatggctgcaaggtggataactcctcgctcactggtgaatcagaaccccagactaggtctccagatttcacaaatgaaaaccccctggagacgaggaacattgccttcttttcaaccaattgtgttgaaggcaccgcacgtggtattgttgtctacactggggatcgcactgtgatgggaagaattgccacacttgcttctgggctggaaggaggccagacccccattgctgcagaaattgaacattttatccacatcatcacgggtgtggctgtgttcctgggtgtgtctttcttcatcctttctctcatccttgagtacacctggcttgaggctgtcatcttcctcatcggtatcatcgtagccaatgtgccggaaggtttgctggccactgtcacggtctgtctgacacttactgccaaacgcatggcaaggaaaaactgcttagtgaagaacttagaagctgtggagaccttggggtccacgtccaccatctgctctgataaaactggaactctgactcagaaccggatgacagtggcccacatgtggtttgacaatcaaatccatgaagctgatacgacagagaatcagagtggtgtctcttttgacaagacttcagctacctggcttgctctgtccagaattgcaggtctttgtaacagggcagtgtttcaggctaaccaggaaaacctacctattcttaagcgggcagttgcaggagatgcctctgagtcagcactcttaaagtgcatagagctgtgctgtggttccgtgaaggagatgagagaaagatacgccaaaatcgtcgagatacccttcaactccaccaacaagtaccagttgtctattcataagaaccccaacacatcggagccccaacacctgttggtgatgaagggcgccccagaaaggatcctagaccgttgcagctctatcctcctccacggcaaggagcagcccctggatgaggagctgaaagacgcctttcagaacgcctatttggagctggggggcctcggagaacgagtcctaggtttctgccacctctttctgccagatgaacagtttcctgaagggttccagtttgacactgacgatgtgaatttccctatcgataatctgtgctttgttgggctcatctccatgattgaccctccacgggcggccgttcctgatgccgtgggcaaatgtcgaagtgctggaattaaggtcatcatggtcacaggagaccatccaatcacagctaaagctattgccaaaggtgtgggcatcatctcagaaggcaatgagaccgtggaagacattgctgcccgcctcaacatcccagtcagccaggtgaaccccagGGTGTTGCTATGTTGCCTAG MAFKVGRDKYEPAAVSEQGDKKGKKGKKDRDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFCRQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYAKIVEIPFNSTNKYQLSIHKNPNTSEPQHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPIDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRVLLCCL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ATPase, Na+/K+ transporting, alpha 1 polypeptide 1 Yes adrenal aldosterone producing adenoma epithelial oncogene, TSG missense, other FALSE NA NA NA NA NA NA NA NA NA 30771 PDE8A::ENSG00000291159 ENSG00000073417.15::ENSG00000291159.1 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:84982348:+ chr15:85523671-85682376:+ chr15:85525579:+ ENSG00000291159 ENSG00000291159.1 lncRNA + + chr15:84631451-84647478:+ chr15:84637347:+ chr15:85174682-85190709:+ chr15:85180578:+ chr15:84984457,chr15:84984455 chr15:84635425,chr15:84635420 NA NA chr15:85527688,chr15:85527686 chr15:85178656,chr15:85178651 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 6 16 6 ONLY_REF_SPLICE YES_LDAS 0.2485 GT 1.5058 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30772 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 1244 TRUE 2190 TRUE 846 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154027597:- chr1:153965166-154127592:- chr1:154000073:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.07Mb];LOCAL_REARRANGEMENT:-:[69710] 16 13 16 8.32 ONLY_REF_SPLICE YES_LDAS 0.2747 GT 1.371 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30775 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1237 FALSE NA FALSE NA ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151573174:+ chr6:151815152-151942328:+ chr6:151894309:+ chr6:151724280,chr6:151724276 chr6:151563423,chr6:151563416 NA NA chr6:152045415,chr6:152045411 chr6:151884558,chr6:151884551 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ESR1:ArcherDX_panel","ESR1:Oncogene","ESR1:FoundationOne_panel"];["HaasMedCancer","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_REARRANGEMENT:+:[35498] 14 24 14 23.03 ONLY_REF_SPLICE YES_LDAS 0.4183 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 30779 UBE2E2::LINC02005 ENSG00000182247.11::ENSG00000242741.2 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2E2 ENSG00000182247.11 protein_coding + + chr3:23203020-23591794:+ chr3:23217312:+ chr3:23244511-23633285:+ chr3:23258803:+ LINC02005 ENSG00000242741.2 lncRNA + + chr3:73805754-73902960:+ chr3:73869776:+ chr3:73854905-73952111:+ chr3:73918927:+ chr3:23466046,chr3:23466043 chr3:73822013,chr3:73822007 NA NA chr3:23507537,chr3:23507534 chr3:73871164,chr3:73871158 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 11 4 11 4 ONLY_REF_SPLICE YES_LDAS 0.1695 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30783 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 1245 TRUE 2190 TRUE 846 GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154030054:- chr1:153965166-154127592:- chr1:154002530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.07Mb];LOCAL_REARRANGEMENT:-:[69710] 9 13 9 4.68 ONLY_REF_SPLICE YES_LDAS 0.1546 GT 1.371 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30785 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21837062,chr9:21837063 chr9:22081222,chr9:22081207 NA NA chr9:21837061,chr9:21837062 chr9:22081221,chr9:22081206 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 8 7 8 1.79 ONLY_REF_SPLICE YES_LDAS 0.1106 GT 1.9656 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30789 BMERB1::ABCC1 ENSG00000166780.11::ENSG00000103222.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1250 FALSE NA FALSE NA BMERB1 ENSG00000166780.11 protein_coding + + chr16:15434475-15625028:+ chr16:15434759:+ chr16:15528332-15718885:+ chr16:15528616:+ ABCC1 ENSG00000103222.20 protein_coding + + chr16:15949138-16143257:+ chr16:16076326:+ chr16:16042995-16237114:+ chr16:16170183:+ chr16:15499220,chr16:15499219 chr16:16072719,chr16:16072715 NA NA chr16:15593077,chr16:15593076 chr16:16166576,chr16:16166572 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF5415|13-68|1e-06 none ["ABCC1:Oncogene"] 7 8 7 7.93 ONLY_REF_SPLICE YES_LDAS 0.1687 GT 1.5628 AG 1.5301 ENST00000561813.5 1-106 ENST00000399408.7 1913-4626 chr16|+|[0]15434654-15434759[0]<==>chr16|+|[1]16076326-16076401[1]|[2]16079352-16079478[2]|[0]16083366-16083542[2]|[0]16086824-16086991[2]|[0]16090405-16090588[0]|[1]16098873-16098902[0]|[1]16102627-16102717[1]|[2]16106738-16106873[2]|[0]16111375-16111582[0]|[1]16114766-16115076[2]|[0]16121975-16122174[1]|[2]16124789-16124915[2]|[0]16125810-16125911[2]|[0]16131789-16131935[2]|[0]16134350-16134508[2]|[0]16136478-16136644[1]|[2]16138364-16138558[1]|[2]16141173-16141281[2] atggaattaaagcaatctttgtccacccatctggaagccgagaagcctctgaggcgctatggggcggtggaggagacggcttggaaaacggagagactggggagaaGCGGGGGCACGAACAGCATCACCGTGAGGAATGCCACATTCACCTGGGCCAGGAGCGACCCTCCCACACTGAATGGCATCACCTTCTCCATCCCCGAAGGTGCTTTGGTGGCCGTGGTGGGCCAGGTGGGCTGCGGAAAGTCGTCCCTGCTCTCAGCCCTCTTGGCTGAGATGGACAAAGTGGAGGGGCACGTGGCTATCAAGGGCTCCGTGGCCTATGTGCCACAGCAGGCCTGGATTCAGAATGATTCTCTCCGAGAAAACATCCTTTTTGGATGTCAGCTGGAGGAACCATATTACAGGTCCGTGATACAGGCCTGTGCCCTCCTCCCAGACCTGGAAATCCTGCCCAGTGGGGATCGGACAGAGATTGGCGAGAAGGGCGTGAACCTGTCTGGGGGCCAGAAGCAGCGCGTGAGCCTGGCCCGGGCCGTGTACTCCAACGCTGACATTTACCTCTTCGATGATCCCCTCTCAGCAGTGGATGCCCATGTGGGAAAACACATCTTTGAAAATGTGATTGGCCCCAAGGGGATGCTGAAGAACAAGACGCGGATCTTGGTCACGCACAGCATGAGCTACTTGCCGCAGGTGGACGTCATCATCGTCATGAGTGGCGGCAAGATCTCTGAGATGGGCTCCTACCAGGAGCTGCTGGCTCGAGACGGCGCCTTCGCTGAGTTCCTGCGTACCTATGCCAGCACAGAGCAGGAGCAGGATGCAGAGGAGAACGGCAGCACAGTGATGGACGAGGAGGAAGCAGGGGTCACGGGCGTCAGCGGTCCAGGGAAGGAAGCAAAGCAAATGGAGAATGGCATGCTGGTGACGGACAGTGCAGGGAAGCAACTGCAGAGACAGCTCAGCAGCTCCTCCTCCTATAGTGGGGACATCAGCAGGCACCACAACAGCACCGCAGAACTGCAGAAAGCTGAGGCCAAGAAGGAGGAGACCTGGAAGCTGATGGAGGCTGACAAGGCGCAGACAGGGCAGGTCAAGCTTTCCGTGTACTGGGACTACATGAAGGCCATCGGACTCTTCATCTCCTTCCTCAGCATCTTCCTTTTCATGTGTAACCATGTGTCCGCGCTGGCTTCCAACTATTGGCTCAGCCTCTGGACTGATGACCCCATCGTCAACGGGACTCAGGAGCACACGAAAGTCCGGCTGAGCGTCTATGGAGCCCTGGGCATTTCACAAGGGATCGCCGTGTTTGGCTACTCCATGGCCGTGTCCATCGGGGGGATCTTGGCTTCCCGCTGTCTGCACGTGGACCTGCTGCACAGCATCCTGCGGTCACCCATGAGCTTCTTTGAGCGGACCCCCAGTGGGAACCTGGTGAACCGCTTCTCCAAGGAGCTGGACACAGTGGACTCCATGATCCCGGAGGTCATCAAGATGTTCATGGGCTCCCTGTTCAACGTCATTGGTGCCTGCATCGTTATCCTGCTGGCCACGCCCATCGCCGCCATCATCATCCCGCCCCTTGGCCTCATCTACTTCTTCGTCCAGAGGTTCTACGTGGCTTCCTCCCGGCAGCTGAAGCGCCTCGAGTCGGTCAGCCGCTCCCCGGTCTATTCCCATTTCAACGAGACCTTGCTGGGGGTCAGCGTCATTCGAGCCTTCGAGGAGCAGGAGCGCTTCATCCACCAGAGTGACCTGAAGGTGGACGAGAACCAGAAGGCCTATTACCCCAGCATCGTGGCCAACAGGTGGCTGGCCGTGCGGCTGGAGTGTGTGGGCAACTGCATCGTTCTGTTTGCTGCCCTGTTTGCGGTGATCTCCAGGCACAGCCTCAGTGCTGGCTTGGTGGGCCTCTCAGTGTCTTACTCATTGCAGGTCACCACGTACTTGAACTGGCTGGTTCGGATGTCATCTGAAATGGAAACCAACATCGTGGCCGTGGAGAGGCTCAAGGAGTATTCAGAGACTGAGAAGGAGGCGCCCTGGCAAATCCAGGAGACAGCTCCGCCCAGCAGCTGGCCCCAGGTGGGCCGAGTGGAATTCCGGAACTACTGCCTGCGCTACCGAGAGGACCTGGACTTCGTTCTCAGGCACATCAATGTCACGATCAATGGGGGAGAAAAGGTCGGCATCGTGGGGCGGACGGGAGCTGGGAAGTCGTCCCTGACCCTGGGCTTATTTCGGATCAACGAGTCTGCCGAAGGAGAGATCATCATCGATGGCATCAACATCGCCAAGATCGGCCTGCACGACCTCCGCTTCAAGATCACCATCATCCCCCAGGACCCTGTTTTGTTTTCGGGTTCCCTCCGAATGAACCTGGACCCATTCAGCCAGTACTCGGATGAAGAAGTCTGGACGTCCCTGGAGCTGGCCCACCTGAAGGACTTCGTGTCAGCCCTTCCTGACAAGCTAGACCATGAATGTGCAGAAGGCGGGGAGAACCTCAGTGTCGGGCAGCGCCAGCTTGTGTGCCTAGCCCGGGCCCTGCTGAGGAAGACGAAGATCCTTGTGTTGGATGAGGCCACGGCAGCCGTGGACCTGGAAACGGACGACCTCATCCAGTCCACCATCCGGACACAGTTCGAGGACTGCACCGTCCTCACCATCGCCCACCGGCTCAACACCATCATGGACTACACAAGGGTGATCGTCTTGGACAAAGGAGAAATCCAGGAGTACGGCGCCCCATCGGACCTCCTGCAGCAGAGAGGTCTTTTCTACAGCATGGCCAAAGACGCCGGCTTGGTGTGA MELKQSLSTHLEAEKPLRRYGAVEETAWKTERLGRSGGTNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASTEQEQDAEENGSTVMDEEEAGVTGVSGPGKEAKQMENGMLVTDSAGKQLQRQLSSSSSYSGDISRHHNSTAELQKAEAKKEETWKLMEADKAQTGQVKLSVYWDYMKAIGLFISFLSIFLFMCNHVSALASNYWLSLWTDDPIVNGTQEHTKVRLSVYGALGISQGIAVFGYSMAVSIGGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLFNVIGACIVILLATPIAAIIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSSWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWTSLELAHLKDFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLLQQRGLFYSMAKDAGLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30791 RAD51C::ATXN7 ENSG00000108384.16::ENSG00000163635.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2193 TRUE 848 RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58724100:+ chr17:56769934-56812972:+ chr17:56801461:+ ATXN7 ENSG00000163635.20 protein_coding + + chr3:63863155-64003462:+ chr3:63979915:+ chr3:63848831-63989138:+ chr3:63965591:+ chr17:58731202,chr17:58731199 chr3:63976828,chr3:63976822 NA NA chr17:56808563,chr17:56808560 chr3:63962504,chr3:63962498 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HHH_5|21-57|3.9e-06^Rad51|100-342|2.2e-32^RecA|100-173|6.3e-06^ATPase|102-140|8.7e-09^AAA_25|105-283|2e-10^DnaB_C|106-292|5.9e-05^HHH_5|120-133|0.59^AAA_24|123-185|2.7e-05^AAA_18|123-141|3.1e-05^nSTAND3|123-141|6.4e-05^AAA_22|123-143|0.00085^AAA|124-163|0.00049^RecA|253-290|0.074^AAA|258-291|0.27 none ["ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr3] 6 17 6 8.82 ONLY_REF_SPLICE YES_LDAS 0.1674 GT 1.5058 AG 1.7232 ENST00000583539.5 1-965 ENST00000522345.2 500-2838 chr17|+|[0]58692644-58692788[0]|[1]58694931-58695189[1]|[2]58696693-58696859[0]|[1]58703196-58703329[2]|[0]58709859-58709990[2]|[0]58720746-58720812[0]|[1]58724040-58724100[1]<==>chr3|+|[1]63979915-63980167[1]|[2]63982186-63982445[0]|[1]63982939-63983021[2]|[0]63988059-63988324[1]|[2]63990176-63990374[2]|[0]63990738-63990859[1]|[2]63995505-63996483[2]|[0]63997621-63997687[0]|[1]63999450-63999559[2] atgcgcgggaagacgttccgctttgaaatgcagcgggatttggtgagtttcccgctgtctccagcggtgcgggtgaagctggtgtctgcggggttccagactgctgaggaactcctagaggtgaaaccctccgagcttagcaaagaagttgggatatctaaagcagaagccttagaaactctgcaaattatcagaagagaatgtctcacaaataaaccaagatatgctggtacatctgagtcacacaagaagtgtacagcactggaacttcttgagcaggagcatacccagggcttcataatcaccttctgttcagcactagatgatattcttgggggtggagtgcccttaatgaaaacaacagaaatttgtggtgcaccaggtgttggaaaaacacaattatgtatgcagttggcagtagatgtgcagataccagaatgttttggaggagtggcaggtgaagcagtttttattgatacagagggaagttttatggttgatagagtggtagaccttgctactgcctgcattcagcaccttcagcttatagcagaaaaacacaagggagaggaacaccgaaaagctttggaggatttcactcttgataatattctttctcatatttattattttcgctgtcgtgactacacagagttactggcacaagtttatcttcttccagatttcctttcagaacactcaaaggttcgactagtgatagtggatggtattgcttttccatttcgtcatgacctagatgacctgtctcttcgtactcggttattaaatggcctagcccagcaaatgatcagccttgcaaataatcacagattagctgtaattttaaccaatcagatgacaacaaagattgatagaaatcaggccttgcttgttcctgcattaggggaaagttggggacatgctgctacaatacggctaatctttcattgggaccgaaagcaaagAAAGAAGACATAGCTCATCCAGCAAGCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGTGTTCTTAGCGCATCCTCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGAACACCAGGCCAATGCATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAATCATGACACCCTCTGTGAAAGTGGAAAAGATTCATCCGAAAATGGATGGCACACTACTGAAATCTGCGGTGGGGCCAACCTGTCCTGCTACTGTGAGTTCCTTAGTCAAGCCTGGCCTTAACTGCCCCTCAATACCAAAGCCAACCTTGCCTTCACCTGGACAGATTCTGAATGGCAAAGGGCTTCCTGCACCGCCCACTCTGGAAAAGAAACCTGAAGACAATTCCAATAATAGGAAATTTTTAAATAAGAGATTATCAGAAAGAGAGTTTGATCCTGACATCCACTGTGGGGTTATTGATCTCGACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCAAGACACATTCCTTAACCCAGCGCAGGGCTGTCCAGGGTAGAAGAAAACGATTTGATGTGTTATTAGCCGAGCACAAAAACAAAACCAGGGAAAAGGAATTGATTCGCCATCCGGACTCTCAGCAACCACCGCAGCCTCTCAGGGACCCGCATCCCGCCCCTCCTAGAACGTCACAGGAGCCGCACCAAAACCCTCACGGAGTGATTCCTTCCGAATCAAAGCCTTTTGTAGCTAGTAAACCTAAACCTCACACCCCCAGTCTTCCAAGGCCTCCAGGCTGCCCTGCTCAGCAAGGTGGGAGTGCCCCCATTGACCCTCCTCCAGTCCATGAATCTCCACACCCTCCCCTGCCTGCCACTGAGCCAGCTTCTCGGTTATCCAGTGAGGAGGGCGAAGGCGATGACAAAGAAGAGTCTGTTGAAAAACTGGACTGTCATTATTCAGGTCATCATCCTCAGCCAGCATCTTTTTGCACATTTGGGAGCCGGCAGATAGGAAGAGGCTATTACGTGTTTGACTCCAGGTGGAATCGACTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAATGCACAGCTATGGAAGAAAATCCCACCAGTGCCCAGTACCACCTCACCCATCTCCACACGTATTCCTCACCGGACAAACTCTGTGCCGACATCACAATGTGGAGTCAGCTATCTGGCAGCAGCCACCGTCTCTACATCCCCAGTCCTGCTCTCATCTACCTGCATCTCCCCAAATAGCAAATCGGTACCAGCTCATGGAACCACACTAAATGCACAGCCTGCTGCTTCAGGGGCGATGGATCCTGTGTGCAGTATGCAATCCAGACAAGTGTCCTCTTCATCCTCATCCCCTTCCACGCCCTCTGGCCTTTCCTCGGTTCCTTCCTCCCCCATGTCCAGGAAACCTCAGAAATTGAAATCCAGCAAATCTTTGAGGCCCAAGGAGTCTTCTGGTAACAGCACTAACTGTCAAAATGCCAGTAGCAGTACCAGTGGCGGCTCAGGAAAGAAACGCAAAAACAGTTCCCCACTGTTGGTTCACTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCTTCTCATTCCATGGAGTCTTTTAGGAAAAACTGTGTGGCTCACTCTGGGCCTCCCTACCCCTCAACGGTAACATCTTCCCATAGCATCGGCCTCAACTGTGTGACGAATAAAGCAAATGCGGTGAACGTCCGGCATGACCAGTCAGGGAGGGGCCCCCCCACCGGGAGCCCTGCTGAATCCATCAAGAGGATGAGTGTGATGGTGAACAGCAGTGATTCTACTCTTTCTCTTGGGCCATTCATTCACCAGTCCAATGAACTGCCTGTCAACTCCCACGGCAGTTTTTCCCACTCACACACTCCTCTAGACAAACTCATAGGAAAGAAAAGAAAGTGCTCACCCAGCTCGAGCAGCATCAACAACAGCAGCAGCAAACCCACAAAGGTTGCCAAAGTGCCAGCCGTGAACAATGTCCACATGAAACACACAGGCACCATCCCAGGGGCACAAGGACTGATGAACAGTTCCCTCCTTCATCAGGATATCTCCTCACCTTGCTTACGAACAGGAATTTCAGCAACATCACCCCAGAGCCCTGACTTAAAATCCAAAGGCACGTCCCTGACAGCTGAAAATAGCACGGGGAGGAATAATGCGGACACTTTTGAGGACAAGTTACACCTCCACTCAGCACTCTGGACTCCACGATGCCTTTGA MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRKKT*LIQQAAFGRSSHFSIFLLPFSVQKQRRQCKWKQPFFQWRCS*RILIKFQVVEITQRETAAQGEHQANASHSAK*SSPW*NHDTLCESGKDSSENGWHTTEICGGANLSCYCEFLSQAWP*LPLNTKANLAFTWTDSEWQRASCTAHSGKET*RQFQ**EIFK*EIIRKRV*S*HPLWGY*SRHQEALHPVFDMQDTFLNPAQGCPG*KKTI*CVISRAQKQNQGKGIDSPSGLSATTAASQGPASRPS*NVTGAAPKPSRSDSFRIKAFCS**T*TSHPQSSKASRLPCSARWECPH*PSSSP*ISTPSPACH*ASFSVIQ*GGRRR*QRRVC*KTGLSLFRSSSSASIFLHIWEPADRKRLLRV*LQVESTSLRPQPHGGEASECTAMEENPTSAQYHLTHLHTYSSPDKLCADITMWSQLSGSSHRLYIPSPALIYLHLPK*QIGTSSWNHTKCTACCFRGDGSCVQYAIQTSVLFILIPFHALWPFLGSFLPHVQETSEIEIQQIFEAQGVFW*QH*LSKCQ*QYQWRLRKETQKQFPTVGSLFLLLFLLLLFFSFHGVF*EKLCGSLWASLPLNGNIFP*HRPQLCDE*SKCGERPA*PVREGPPHREPC*IHQEDECDGEQQ*FYSFSWAIHSPVQ*TACQLPRQFFPLTHSSRQTHRKEKKVLTQLEQHQQQQQQTHKGCQSASREQCPHETHRHHPRGTRTDEQFPPSSGYLLTLLTNRNFSNITPEP*LKIQRHVPDS*K*HGEE*CGHF*GQVTPPLSTLDSTMPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 30793 PARD6B::BCAS3 ENSG00000124171.9::ENSG00000141376.24 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE FALSE TRUE 1254 FALSE NA FALSE NA PARD6B ENSG00000124171.9 protein_coding + + chr20:50731580-50756795:+ chr20:50731852:+ chr20:49348117-49373332:+ chr20:49348389:+ BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61368327:+ chr17:58754814-59470199:+ chr17:59445688:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PB1-PARTIAL|16-66~|1.2e-21 none ["BCAS3:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr17] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1017 GT 1.5628 AG 1.9899 ENST00000371610.7 1-66 ENST00000588462.5 2471-2853 chr20|+|[0]50731787-50731852[2]<==>chr17|+|[1]61368327-61368494[0]|[1]61380506-61380571[0]|[1]61391977-61392125[2] atgaaccgcagccaccggcacggggcgggcagcggctgcctgggcactatggaggtgaagagcaagGTACCTTTGACAGGAGCGTGACCCTGCTGGAGGTGTGCGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCACATGTCCTCCATGGAGCACACGGAGGAGGGCCTCCGGGAGCGACTTGCCGACGCCATGGCCGAGTCACCTAGCCGGGACGTCGTGGGATCCGGAACAGACACAGCCCTTGACGTAGCAGTAAAAACCTTCCCCCCTGAGAGACACGTGGCAGTGAAGTGTTTTGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCAGGCTCCACCAGCGGCAGCATACCAAGAAACTTTGATGGCTACCGATCTCCGCTGCCCACCAATGAGAGCCAGCCCCTCAGCCTCTTCCCGACTGGCTTCCCGTAG MNRSHRHGAGSGCLGTMEVKSKVPLTGA*PCWRCAGAGLRASGCGTCPPWSTRRRASGSDLPTPWPSHLAGTSWDPEQTQPLT*Q*KPSPLRDTWQ*SVLNFSEREASRL*VTAQAPPAAAYQETLMATDLRCPPMRASPSASSRLASR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30796 RAD51C::ATXN7 ENSG00000108384.16::ENSG00000163635.20 MCF7 SRR8615758 SRR8652105 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1248 TRUE 2193 TRUE 848 RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58730307:+ chr17:56769934-56812972:+ chr17:56807668:+ ATXN7 ENSG00000163635.20 protein_coding + + chr3:63863155-64003462:+ chr3:63979915:+ chr3:63848831-63989138:+ chr3:63965591:+ chr17:58731202,chr17:58731199 chr3:63976828,chr3:63976822 NA NA chr17:56808563,chr17:56808560 chr3:63962504,chr3:63962498 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Rad51|3-202|1e-23^cobW|4-63|0.0034^AAA_25|6-166|6e-09^AAA_24|6-68|1.6e-05^AAA_18|6-33|2e-05^nSTAND3|6-24|4.6e-05^DnaB_C|6-176|0.00012^NACHT|6-34|0.00025^AAA_22|6-35|0.00058^AAA|7-48|0.00033^NACHT|97-127|0.55^AAA|141-174|0.18^cobW|142-176|0.02^nSTAND3|158-166|4.3 none ["ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr3] 1 20 1 8.88 ONLY_REF_SPLICE NO_LDAS 0.1116 GT 1.9329 AG 1.7232 ENST00000697686.1 1-736 ENST00000522345.2 500-2838 chr17|+|[0]58695137-58695189[1]|[2]58696693-58696859[0]|[1]58703196-58703329[2]|[0]58709859-58709990[2]|[0]58720746-58720812[0]|[1]58724040-58724100[1]|[2]58730186-58730307[0]<==>chr3|+|[1]63979915-63980167[1]|[2]63982186-63982445[0]|[1]63982939-63983021[2]|[0]63988059-63988324[1]|[2]63990176-63990374[2]|[0]63990738-63990859[1]|[2]63995505-63996483[2]|[0]63997621-63997687[0]|[1]63999450-63999559[2] atgaaaacaacagaaatttgtggtgcaccaggtgttggaaaaacacaattatgtatgcagttggcagtagatgtgcagataccagaatgttttggaggagtggcaggtgaagcagtttttattgatacagagggaagttttatggttgatagagtggtagaccttgctactgcctgcattcagcaccttcagcttatagcagaaaaacacaagggagaggaacaccgaaaagctttggaggatttcactcttgataatattctttctcatatttattattttcgctgtcgtgactacacagagttactggcacaagtttatcttcttccagatttcctttcagaacactcaaaggttcgactagtgatagtggatggtattgcttttccatttcgtcatgacctagatgacctgtctcttcgtactcggttattaaatggcctagcccagcaaatgatcagccttgcaaataatcacagattagctgtaattttaaccaatcagatgacaacaaagattgatagaaatcaggccttgcttgttcctgcattaggggaaagttggggacatgctgctacaatacggctaatctttcattgggaccgaaagcaaagatggagtctcgccctgtcgcccaggctggagtgcagaggcacgatctcggctcactgcaacctccacctccccagttcaagtgattctcctacctcagcctcctcagtagctgggattacagAAAGAAGACATAGCTCATCCAGCAAGCCGCCTTTGGCCGTTCCTCCCACTTCAGTATTTTCCTTCTTCCCTTCTCTGTCCAAAAGCAAAGGAGGCAGTGCAAGTGGAAGCAACCGTTCTTCCAGTGGAGGTGTTCTTAGCGCATCCTCATCAAGTTCCAAGTTGTTGAAATCACCCAAAGAGAAACTGCAGCTCAGGGGGAACACCAGGCCAATGCATCCCATTCAGCAAAGTAGAGTTCCCCATGGTAGAATCATGACACCCTCTGTGAAAGTGGAAAAGATTCATCCGAAAATGGATGGCACACTACTGAAATCTGCGGTGGGGCCAACCTGTCCTGCTACTGTGAGTTCCTTAGTCAAGCCTGGCCTTAACTGCCCCTCAATACCAAAGCCAACCTTGCCTTCACCTGGACAGATTCTGAATGGCAAAGGGCTTCCTGCACCGCCCACTCTGGAAAAGAAACCTGAAGACAATTCCAATAATAGGAAATTTTTAAATAAGAGATTATCAGAAAGAGAGTTTGATCCTGACATCCACTGTGGGGTTATTGATCTCGACACCAAGAAGCCCTGCACCCGGTCTTTGACATGCAAGACACATTCCTTAACCCAGCGCAGGGCTGTCCAGGGTAGAAGAAAACGATTTGATGTGTTATTAGCCGAGCACAAAAACAAAACCAGGGAAAAGGAATTGATTCGCCATCCGGACTCTCAGCAACCACCGCAGCCTCTCAGGGACCCGCATCCCGCCCCTCCTAGAACGTCACAGGAGCCGCACCAAAACCCTCACGGAGTGATTCCTTCCGAATCAAAGCCTTTTGTAGCTAGTAAACCTAAACCTCACACCCCCAGTCTTCCAAGGCCTCCAGGCTGCCCTGCTCAGCAAGGTGGGAGTGCCCCCATTGACCCTCCTCCAGTCCATGAATCTCCACACCCTCCCCTGCCTGCCACTGAGCCAGCTTCTCGGTTATCCAGTGAGGAGGGCGAAGGCGATGACAAAGAAGAGTCTGTTGAAAAACTGGACTGTCATTATTCAGGTCATCATCCTCAGCCAGCATCTTTTTGCACATTTGGGAGCCGGCAGATAGGAAGAGGCTATTACGTGTTTGACTCCAGGTGGAATCGACTTCGCTGCGCCCTCAACCTCATGGTGGAGAAGCATCTGAATGCACAGCTATGGAAGAAAATCCCACCAGTGCCCAGTACCACCTCACCCATCTCCACACGTATTCCTCACCGGACAAACTCTGTGCCGACATCACAATGTGGAGTCAGCTATCTGGCAGCAGCCACCGTCTCTACATCCCCAGTCCTGCTCTCATCTACCTGCATCTCCCCAAATAGCAAATCGGTACCAGCTCATGGAACCACACTAAATGCACAGCCTGCTGCTTCAGGGGCGATGGATCCTGTGTGCAGTATGCAATCCAGACAAGTGTCCTCTTCATCCTCATCCCCTTCCACGCCCTCTGGCCTTTCCTCGGTTCCTTCCTCCCCCATGTCCAGGAAACCTCAGAAATTGAAATCCAGCAAATCTTTGAGGCCCAAGGAGTCTTCTGGTAACAGCACTAACTGTCAAAATGCCAGTAGCAGTACCAGTGGCGGCTCAGGAAAGAAACGCAAAAACAGTTCCCCACTGTTGGTTCACTCTTCCTCCTCCTCTTCCTCCTCCTCCTCTTCTTCTCATTCCATGGAGTCTTTTAGGAAAAACTGTGTGGCTCACTCTGGGCCTCCCTACCCCTCAACGGTAACATCTTCCCATAGCATCGGCCTCAACTGTGTGACGAATAAAGCAAATGCGGTGAACGTCCGGCATGACCAGTCAGGGAGGGGCCCCCCCACCGGGAGCCCTGCTGAATCCATCAAGAGGATGAGTGTGATGGTGAACAGCAGTGATTCTACTCTTTCTCTTGGGCCATTCATTCACCAGTCCAATGAACTGCCTGTCAACTCCCACGGCAGTTTTTCCCACTCACACACTCCTCTAGACAAACTCATAGGAAAGAAAAGAAAGTGCTCACCCAGCTCGAGCAGCATCAACAACAGCAGCAGCAAACCCACAAAGGTTGCCAAAGTGCCAGCCGTGAACAATGTCCACATGAAACACACAGGCACCATCCCAGGGGCACAAGGACTGATGAACAGTTCCCTCCTTCATCAGGATATCTCCTCACCTTGCTTACGAACAGGAATTTCAGCAACATCACCCCAGAGCCCTGACTTAAAATCCAAAGGCACGTCCCTGACAGCTGAAAATAGCACGGGGAGGAATAATGCGGACACTTTTGAGGACAAGTTACACCTCCACTCAGCACTCTGGACTCCACGATGCCTTTGA MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHWDRKQRWSLALSPRLECRGTISAHCNLHLPSSSDSPTSASSVAGITERRHSSSSKPPLAVPPTSVFSFFPSLSKSKGGSASGSNRSSSGGVLSASSSSSKLLKSPKEKLQLRGNTRPMHPIQQSRVPHGRIMTPSVKVEKIHPKMDGTLLKSAVGPTCPATVSSLVKPGLNCPSIPKPTLPSPGQILNGKGLPAPPTLEKKPEDNSNNRKFLNKRLSEREFDPDIHCGVIDLDTKKPCTRSLTCKTHSLTQRRAVQGRRKRFDVLLAEHKNKTREKELIRHPDSQQPPQPLRDPHPAPPRTSQEPHQNPHGVIPSESKPFVASKPKPHTPSLPRPPGCPAQQGGSAPIDPPPVHESPHPPLPATEPASRLSSEEGEGDDKEESVEKLDCHYSGHHPQPASFCTFGSRQIGRGYYVFDSRWNRLRCALNLMVEKHLNAQLWKKIPPVPSTTSPISTRIPHRTNSVPTSQCGVSYLAAATVSTSPVLLSSTCISPNSKSVPAHGTTLNAQPAASGAMDPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHSGPPYPSTVTSSHSIGLNCVTNKANAVNVRHDQSGRGPPTGSPAESIKRMSVMVNSSDSTLSLGPFIHQSNELPVNSHGSFSHSHTPLDKLIGKKRKCSPSSSSINNSSSKPTKVAKVPAVNNVHMKHTGTIPGAQGLMNSSLLHQDISSPCLRTGISATSPQSPDLKSKGTSLTAENSTGRNNADTFEDKLHLHSALWTPRCL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 30798 TLK2::CA10 ENSG00000146872.19::ENSG00000154975.14 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1255 TRUE 2219 TRUE 859 TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62524331:+ chr17:60536019-60692842:+ chr17:60601692:+ CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51653736:- chr17:49707674-50237377:- chr17:49731097:- chr17:62532633 chr17:51740490 NA NA chr17:60609994 chr17:49817850 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GIT_CC|228-259|7.4e-06^Vir_act_alpha_C|244-313|4.7e-05^PK_Tyr_Ser-Thr|291-343|0.2^Vir_act_alpha_C|330-344|4 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.30Mb] 60 78 60 57.95 ONLY_REF_SPLICE YES_LDAS 1.5966 GT 1.7465 AG 1.9219 ENST00000326270.13 1-363 ENST00000285273.8 466-987 chr17|+|[0]62481126-62481206[2]|[0]62520773-62520844[2]|[0]62522204-62522273[0]|[1]62523134-62523177[2]|[0]62524236-62524331[2]<==>chr17|-|[2]51631584-51631606[1]|[0]51633476-51633650[0]|[2]51635855-51636009[1]|[0]51649182-51649254[0]|[2]51653641-51653736[0] atgatggaagaattgcatagcctggacccacgacggcaggaattattggaggccaggtttactggagtaggtgttagtaagggaccacttaatagtgagtcttccaaccagagcttgtgcagcgtcggatccttgagtgataaagaagtagagactcccgagaaaaagcagaatgaccagcgaaatcggaaaagaaaagctgaaccatatgaaactagccaagggaaaggcactcctaggggacataaaattagtgattactttgagtttgctgggggaagcgcgccaggaaccagccctggcagaagtgttccaccagttgcacgatcctcaccgcaacattccttatccaatcccttaccgGTGCAGCTCATCCACTATAACCATGAGCTATATACGAATGTCACAGAAGCTGCAAAGAGTCCAAATGGATTGGTGGTAGTTTCTATATTTATAAAAGTTTCTGATTCATCAAACCCATTTCTTAATCGAATGCTCAACAGAGATACTATCACAAGAATAACATATAAAAATGATGCATATTTACTACAGGGGCTTAATATAGAGGAACTATATCCAGAGACCTCTAGTTTCATCACTTACGATGGGTCGATGACTATCCCACCCTGCTATGAGACAGCAAGTTGGATCATAATGAACAAACCTGTCTATATAACCAGGATGCAGATGCATTCCTTGCGCCTGCTCAGCCAGAACCAGCCATCTCAGATCTTTCTGAGCATGAGTGACAACTTCAGGCCTGTCCAGCCACTCAACAACCGCTGCATCCGCACCAATATCAACTTCAGTTTACAGGGGAAGGACTGTCCAAACAACCGAGCCCAGAAGCTTCAGTATAGAGTAAATGAATGGCTCCTCAAGTAG MMEELHSLDPRRQELLEARFTGVGVSKGPLNSESSNQSLCSVGSLSDKEVETPEKKQNDQRNRKRKAEPYETSQGKGTPRGHKISDYFEFAGGSAPGTSPGRSVPPVARSSPQHSLSNPLPVQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVSDSSNPFLNRMLNRDTITRITYKNDAYLLQGLNIEELYPETSSFITYDGSMTIPPCYETASWIIMNKPVYITRMQMHSLRLLSQNQPSQIFLSMSDNFRPVQPLNNRCIRTNINFSLQGKDCPNNRAQKLQYRVNEWLLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30800 ATP10D::ENSG00000286328 ENSG00000145246.14::ENSG00000286328.1 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1258 FALSE NA FALSE NA ATP10D ENSG00000145246.14 protein_coding + + chr4:47485275-47593486:+ chr4:47485519:+ chr4:47487292-47595503:+ chr4:47487536:+ ENSG00000286328 ENSG00000286328.1 lncRNA + + chr18:41341319-41507550:+ chr18:41504134:+ chr18:38921283-39087514:+ chr18:39084098:+ chr4:47491047,chr4:47491047 chr18:41494113,chr18:41494110 NA NA chr4:47493064,chr4:47493064 chr18:39074077,chr18:39074074 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 31 29 31 29 ONLY_REF_SPLICE YES_LDAS 0.8121 GT 1.7968 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30802 TLK2::CA10 ENSG00000146872.19::ENSG00000154975.14 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1256 TRUE 2219 TRUE 859 TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62523177:+ chr17:60536019-60692842:+ chr17:60600538:+ CA10 ENSG00000154975.14 protein_coding - - chr17:51630313-52160017:- chr17:51653736:- chr17:49707674-50237377:- chr17:49731097:- chr17:62532633 chr17:51740490 NA NA chr17:60609994 chr17:49817850 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Vir_act_alpha_C|149-218|2.7e-05^PK_Tyr_Ser-Thr|196-248|0.12^Vir_act_alpha_C|235-249|1.4 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.30Mb] 27 41 27 9.01 ONLY_REF_SPLICE YES_LDAS 0.4875 GT 1.8062 AG 1.9219 ENST00000684772.1 1-267 ENST00000285273.8 466-987 chr17|+|[0]62481126-62481206[2]|[0]62520773-62520844[2]|[0]62522204-62522273[0]|[1]62523134-62523177[2]<==>chr17|-|[2]51631584-51631606[1]|[0]51633476-51633650[0]|[2]51635855-51636009[1]|[0]51649182-51649254[0]|[2]51653641-51653736[0] atgatggaagaattgcatagcctggacccacgacggcaggaattattggaggccaggtttactggagtaggtgttagtaagggaccacttaatagtgagtcttccaaccagagcttgtgcagcgtcggatccttgagtgataaagaagtagagactcccgagaaaaagcagaatgaccagcgaaatcggaaaagaaaagctgaaccatatgaaactagccaagggaaaggcactcctaggggacataaaattagtgattactttgagGTGCAGCTCATCCACTATAACCATGAGCTATATACGAATGTCACAGAAGCTGCAAAGAGTCCAAATGGATTGGTGGTAGTTTCTATATTTATAAAAGTTTCTGATTCATCAAACCCATTTCTTAATCGAATGCTCAACAGAGATACTATCACAAGAATAACATATAAAAATGATGCATATTTACTACAGGGGCTTAATATAGAGGAACTATATCCAGAGACCTCTAGTTTCATCACTTACGATGGGTCGATGACTATCCCACCCTGCTATGAGACAGCAAGTTGGATCATAATGAACAAACCTGTCTATATAACCAGGATGCAGATGCATTCCTTGCGCCTGCTCAGCCAGAACCAGCCATCTCAGATCTTTCTGAGCATGAGTGACAACTTCAGGCCTGTCCAGCCACTCAACAACCGCTGCATCCGCACCAATATCAACTTCAGTTTACAGGGGAAGGACTGTCCAAACAACCGAGCCCAGAAGCTTCAGTATAGAGTAAATGAATGGCTCCTCAAGTAG MMEELHSLDPRRQELLEARFTGVGVSKGPLNSESSNQSLCSVGSLSDKEVETPEKKQNDQRNRKRKAEPYETSQGKGTPRGHKISDYFEVQLIHYNHELYTNVTEAAKSPNGLVVVSIFIKVSDSSNPFLNRMLNRDTITRITYKNDAYLLQGLNIEELYPETSSFITYDGSMTIPPCYETASWIIMNKPVYITRMQMHSLRLLSQNQPSQIFLSMSDNFRPVQPLNNRCIRTNINFSLQGKDCPNNRAQKLQYRVNEWLLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30808 MTX2::MFSD4B ENSG00000128654.14::ENSG00000173214.7 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1259 FALSE NA FALSE NA MTX2 ENSG00000128654.14 protein_coding + + chr2:176269395-176338025:+ chr2:176269669:+ chr2:177134123-177202753:+ chr2:177134397:+ MFSD4B ENSG00000173214.7 protein_coding + + chr6:111259327-111445354:+ chr6:111262257:+ chr6:111580530-111766557:+ chr6:111583460:+ chr2:176285214,chr2:176285801,chr2:176285212 chr6:111261320,chr6:111260843,chr6:111261315 NA NA chr2:177149942,chr2:177150529,chr2:177149940 chr6:111582523,chr6:111582046,chr6:111582518 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none MFS_1-PARTIAL|~28-333|8.3e-10^MFS_1|314-438|2e-11 ["CCLE_StarF2019"] 15 15 15 12.5 ONLY_REF_SPLICE YES_LDAS 0.3722 GT 1.9656 AG 1.7056 ENST00000452865.1 1-40 ENST00000672554.1 28-1611 chr2|+|[0]176269630-176269669[0]<==>chr6|+|[0]111262257-111262425[0]|[1]111263830-111263946[0]|[1]111265384-111265437[0]|[1]111265876-111267119[2] atgtctctagtggcggaagccttcgtctcccagattgcagGGATTGAGTGTTGCTATAGTGGGACCCACGTTTCAAGATTTGGCAACAAACGTGAACCGAAATATCAGTAGTCTGTCTTTCATTTTTGTGGGTCGTGCCTTGGGATATTTGAGTGGCTCTGTGATTGGTGGATTTCTTGTCGATGTCATGAATTATTTTTTACTTTTGGGAATCTCAATGTCGGCTACCACCGTTGGTCTTTATCTTGTTCCTTTTTGCAAGACAGCAATATTACTCACTGTCATGATGTCTATCTTCGGTGTTTCAATTGGCATTCTGGATACAGAATCCTGGCTATTCAGGTTCCTGGACGTGTGTTTTGCATCTGTTACATACATAAGTGGTAACGTCCTTATCTTGGCTATTTGGGGGGACAAAGGAGCCCCACATATGCAGGCCTTACACTTCTCTTTTGCCTTGGGTGCCTTTTTGGCTCCACTGCTAGCTAAACTGGCTTTGGGTCCGACAGCGTCTGCTGAAAACCACACAGAGTCTGACTTCCATCCTGCACTCAACCAATCATCTGATGCTGACTCAGAAGCTCTGTTTGGAGTACCTAATGATAAGAATTTACTGTGGGCTTATGCTGTTATCGGTACTTACATGTTCTTAGTTTCTGTCATTTTTTTTTGTCTGTTTTTAAAGAATAGCTCAAAGCAAGAAAAAGCAAGAGCATCTGCTGAGACATTTCGAAGAGCAAAATATCACAACGCCCTTCTTTGTCTCCTTTTTCTGTTCTTCTTTTTTTATGTTGGAGCTGAGGTAACATATGGCTCTTATGTTTTCTCATTTGCAACCACCCATGCTGGCATGAAAGAAAGTGAAGCTGCTGGGTTGAACTCCATCTTCTGGGGGACATTTGCAGCCTGCAGGGGCCTGGCAATCTTTTTTGCTACCTGTTTACAGCCTGGAACCATGATTGTGTTGAGCAACATTGGCAGCCTGACTTCATCTTTATTTCTGGTGCTTTTTGACAAGAACCCAATTTGTCTCTGGATAGCAACTTCAGTGTATGGGGCTTCAATGGCAACCACATTTCCGAGTGGTGTTTCTTGGATTGAGCAGTACACGACCATCCATGGGAAATCTGCAGCATTTTTTGTAATTGGTGCTTCCCTGGGAGAAATGGCTATTCCTGCAGTCATTGGAATTCTTCAAGGAAAATACCCTGATTTGCCTGTAGTTCTGTATACCTCTTTGGGAGCATCAATAGCTACTGGTATTTTATTTCCTGTGCTATATAAATTAGCCACTTCACCTCTTGATCGCCAGCGAAAAGAAGACAGAAAGAGTGAGGACCAGAAAGCTCTGCTCTCTAGCTCCGGGCTAAATGAATATGAGGAAGAGAATGAAGAGGAGGATGCAGAAAAATGGAATGAAATGGATTTTGAAATGATTGAAACGAATGATACAATGAGGCATTCTATAATAGAGACATCTAGAAGTAGTCTGACGGAGCCCACAGCTGAAGTCTATAATCAATACCCATCAAATGCACTGGTGTTTGAGTCTTCTCCTTTTAATACTGGCAGTGCCCATGTGAAGCACTTGCCAGAAACCAGGACAAAAGGGACTAACGTTTAG MSLVAEAFVSQIAGIECCYSGTHVSRFGNKREPKYQ*SVFHFCGSCLGIFEWLCDWWISCRCHELFFTFGNLNVGYHRWSLSCSFLQDSNITHCHDVYLRCFNWHSGYRILAIQVPGRVFCICYIHKW*RPYLGYLGGQRSPTYAGLTLLFCLGCLFGSTAS*TGFGSDSVC*KPHRV*LPSCTQPII*C*LRSSVWST***EFTVGLCCYRYLHVLSFCHFFLSVFKE*LKARKSKSIC*DISKSKISQRPSLSPFSVLLFLCWS*GNIWLLCFLICNHPCWHERK*SCWVELHLLGDICSLQGPGNLFCYLFTAWNHDCVEQHWQPDFIFISGAF*QEPNLSLDSNFSVWGFNGNHISEWCFLD*AVHDHPWEICSIFCNWCFPGRNGYSCSHWNSSRKIP*FACSSVYLFGSINSYWYFISCAI*ISHFTS*SPAKRRQKE*GPESSAL*LRAK*I*GRE*RGGCRKME*NGF*ND*NE*YNEAFYNRDI*K*SDGAHS*SL*SIPIKCTGV*VFSF*YWQCPCEALARNQDKRD*RL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30817 ATOSA::CYP19A1 ENSG00000047346.13::ENSG00000137869.16 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52678006:- chr15:52873514-53002014:- chr15:52970203:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51242950:- chr15:51500254-51630798:- chr15:51535147:- chr15:52642422,chr15:52642422,chr15:52642426 chr15:51310370,chr15:51310369,chr15:51310355 NA NA chr15:52934619,chr15:52934619,chr15:52934623 chr15:51602567,chr15:51602566,chr15:51602552 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CYP19A1:Oncogene"] 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.1896 GT 1.8256 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30818 RAD51C::PPM1E ENSG00000108384.16::ENSG00000175175.6 NCIH1930 SRR8615764 SRR8652048 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1261 FALSE NA FALSE NA RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58695189:+ chr17:56769934-56812972:+ chr17:56772550:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58969539:+ chr17:56833215-57062540:+ chr17:57046900:+ chr17:58696605 chr17:58967339 NA NA chr17:56773966 chr17:57044700 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HHH_5|21-57|3.2e-07^HTH_10|41-66|2.6e-05^Rad51|100-134|3e-06^ATPase|102-132|7.1e-08^HHH_5|120-133|0.057 none ["PPM1E:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.02Mb];NEIGHBORS[20258] 4 6 4 6 ONLY_REF_SPLICE YES_LDAS 0.1353 GT 1.5546 AG 1.4566 ENST00000482007.5 1-404 ENST00000308249.4 784-2268 chr17|+|[0]58692644-58692788[0]|[1]58694931-58695189[1]<==>chr17|+|[0]58969539-58969727[2]|[0]58972132-58972275[2]|[0]58972832-58972925[0]|[1]58979974-58981031[2] atgcgcgggaagacgttccgctttgaaatgcagcgggatttggtgagtttcccgctgtctccagcggtgcgggtgaagctggtgtctgcggggttccagactgctgaggaactcctagaggtgaaaccctccgagcttagcaaagaagttgggatatctaaagcagaagccttagaaactctgcaaattatcagaagagaatgtctcacaaataaaccaagatatgctggtacatctgagtcacacaagaagtgtacagcactggaacttcttgagcaggagcatacccagggcttcataatcaccttctgttcagcactagatgatattcttgggggtggagtgcccttaatgaaaacaacagaaatttgtggtgcaccaggtgttggaaaaacacaattatgGACCAGGAAGAACAAGCTTACTTTGCAGTGTTTGATGGCCATGGGGGAGTAGATGCTGCTATTTATGCCTCCATTCACCTCCACGTTAACTTAGTCCGCCAGGAGATGTTCCCCCATGATCCTGCTGAGGCCCTGTGCAGGGCCTTCCGGGTCACTGATGAGCGGTTTGTGCAGAAAGCAGCCAGGGAGAGCTTAAGATGTGGGACCACAGGAGTGGTGACTTTCATCAGAGGCAACATGCTACATGTGGCCTGGGTGGGTGATTCCCAGGTTATGCTTGTGAGAAAGGGCCAAGCTGTTGAACTAATGAAGCCACACAAACCAGACAGAGAGGATGAAAAGCAGAGAATTGAGGCCCTTGGAGGTTGCGTAGTCTGGTTTGGTGCCTGGAGGGTGAATGGAAGTCTGTCGGTTTCCAGAGCTATTGGAGATGCTGAACATAAGCCATATATCTGTGGGGATGCAGATTCTGCCTCCACTGTTCTGGATGGGACCGAAGACTACCTCATTCTGGCCTGTGATGGCTTCTATGACACCGTGAACCCTGATGAGGCAGTGAAAGTTGTGTCCGACCACCTGAAAGAGAATAATGGAGACAGCAGCATGGTTGCCCACAAATTAGTGGCATCAGCTCGTGATGCTGGGTCAAGTGATAACATCACGGTTATTGTGGTATTCCTGAGGGACATGAACAAAGCTGTAAATGTTAGTGAGGAATCAGATTGGACAGAGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGATAAGGAGAATCATGGAGAGTGCAAACGCCCTTGGCCTCAGCACCAGTGCTCAGCACCAGCCGACCTAGGCTATGATGGGCGTGTGGATTCATTCACTGATAGAACTAGCCTGAGCCCAGGGTCCCAAATCAACGTGCTGGAAGACCCAGGCTACCTAGATCTCACACAAATAGAAGCAAGCAAACCTCACAGTGCCCAGTTTTTGCTACCAGTTGAGATGTTTGGTCCTGGTGCACCAAAGAAAGCAAATCTTATTAATGAGTTAATGATGGAGAAAAAATCAGTTCAGTCATCATTGCCTGAATGGAGTGGTGCTGGAGAGTTTCCCACTGCTTTCAATTTGGGTTCAACAGGGGAGCAGATATACAGAATGCAGAGCTTGTCTCCTGTCTGTTCAGGGTTGGAAAATGAACAGTTCAAATCCCCGGGAAACAGAGTTTCTAGATTGTCTCATTTACGCCACCACTACTCAAAGAAGTGGCACAGATTCAGGTTTAATCCAAAGTTTTATTCATTTCTCTCTGCTCAAGAGCCTTCCCACAAAATAGGCACTAGCCTGTCCTCACTTACTGGAAGTGGGAAGAGAAATAGGATAAGAAGTTCTCTGCCATGGAGGCAAAATAGTTGGAAAGGGTACAGTGAAAACATGAGGAAGCTCAGAAAGACTCATGATATTCCATGCCCAGATCTTCCTTGGAGCTATAAAATAGAATAA MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLWTRKNKLTLQCLMAMGE*MLLFMPPFTSTLT*SARRCSPMILLRPCAGPSGSLMSGLCRKQPGRA*DVGPQEW*LSSEATCYMWPGWVIPRLCL*ERAKLLN**SHTNQTERMKSRELRPLEVA*SGLVPGG*MEVCRFPELLEMLNISHISVGMQILPPLFWMGPKTTSFWPVMASMTP*TLMRQ*KLCPTT*KRIMETAAWLPTN*WHQLVMLGQVITSRLLWYS*GT*TKL*MLVRNQIGQRTLFKEGKKMVGMIRRIMESANALGLSTSAQHQPT*AMMGVWIHSLIELA*AQGPKSTCWKTQAT*ISHK*KQANLTVPSFCYQLRCLVLVHQRKQILLMS**WRKNQFSHHCLNGVVLESFPLLSIWVQQGSRYTECRACLLSVQGWKMNSSNPRETEFLDCLIYATTTQRSGTDSGLIQSFIHFSLLKSLPTK*ALACPHLLEVGREIG*EVLCHGGKIVGKGTVKT*GSSERLMIFHAQIFLGAIK*N FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 30822 TENM4::NRG1 ENSG00000149256.16::ENSG00000157168.22 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1263 FALSE NA FALSE NA TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78854104:- chr11:78363874-79152074:- chr11:78565149:- NRG1 ENSG00000157168.22 protein_coding + + chr8:31639222-32855666:+ chr8:32595828:+ chr8:31496738-32713184:+ chr8:32453346:+ chr11:78759594,chr11:78759594,chr11:78759594,chr11:78759594,chr11:78759594 chr8:32593795,chr8:32593796,chr8:32593791,chr8:32593777,chr8:32593742 NA NA chr11:78470639,chr11:78470639,chr11:78470639,chr11:78470639,chr11:78470639 chr8:32451313,chr8:32451314,chr8:32451309,chr8:32451295,chr8:32451260 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ten_N|12-168|4.2e-81^Ten_N|167-340|8e-73^EGF_2|566-592|1.9e-05^I-EGF_1|568-586|0.14^hEGF|570-583|0.11^EGF_2|597-623|0.00066^NAGLU_N|600-627|0.00064^I-EGF_1|600-618|1.2e-05^hEGF|601-618|0.56^EGF_2|632-657|4e-08^I-EGF_1|634-652|3.8e-05^hEGF|635-652|1.2e-06^EGF_2|662-689|7.9e-06^I-EGF_1|665-684|0.051^hEGF|667-684|0.0073^NAGLU_N|677-693|0.11^EGF_2|699-724|1.4e-05^I-EGF_1|699-719|0.00017^hEGF|700-717|0.013^NAGLU_N|712-725|5.6^EGF_2|729-755|5.5e-08^I-EGF_1|730-750|0.003^hEGF|733-750|0.017^EGF_2|760-786|9.3e-07^I-EGF_1|762-781|0.036^hEGF|764-781|6.3e-05^EGF_2|800-830|0.001^hEGF|804-825|0.0051^I-EGF_1|804-825|6.5^CarboxypepD_reg|924-966|2.1e-05^NHL|1236-1249|0.42^NHL|1347-1362|0.48^NHL|1408-1440|0.0022^NHL|1472-1486|2.1^EGF_2|1515-1526|5.3^NHL|1536-1560|4.4e-06^RHS_repeat|1612-1639|0.094^RHS_repeat-PARTIAL|1680-1681~|2.5e-08 DUF6377-PARTIAL|~305-364|7e-06^DUF973-PARTIAL|~305-360|0.00018^Cyt_b-c1_8|322-350|0.00018^Neuregulin|340-695|2.5e-183^Ig_2|389-423|1.8^ig|417-440|5.7^V-set|419-469|1.8^I-set|421-442|7.4^Ig_3|422-443|9.1 ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr8] 83 47 83 47 ONLY_REF_SPLICE YES_LDAS 1.6844 GT 1.8892 AG 1.6402 ENST00000278550.12 1-1681 ENST00000523534.5 305-2142 chr11|-|[0]78854104-78854314[0]|[2]78855964-78856178[1]|[0]78862962-78863132[1]|[0]78889785-78890020[2]|[1]78891238-78891336[2]|[1]78903268-78903523[1]|[0]79064738-79065007[1]|[0]79069722-79069944[0]<==>chr8|+|[1]32595828-32596005[1]|[2]32605562-32605683[0]|[1]32614514-32614564[0]|[1]32616835-32616885[0]|[1]32727949-32728078[1]|[2]32742675-32742733[0]|[1]32749561-32749584[0]|[1]32754372-32754474[1]|[2]32756403-32756529[2]|[0]32759306-32759436[1]|[2]32760200-32760406[1]|[2]32763748-32764402[2] atggacgtgaaggagaggaagccttaccgctcgctgacccggcgccgcgacgccgagcgccgctacaccagctcgtccgcggacagcgaggagggcaaagccccgcagaaatcgtacagctccagcgagaccctgaaggcctacgaccaggacgcccgcctagcctatggcagccgcgtcaaggacattgtgccgcaggaggccgaggaattctgccgcacaggtgccaacttcaccctgcgggagctggggctggaagaagtaacgccccctcacgggaccctgtaccggacagacattggcctcccccactgcggctactccatgggggctggctctgatgccgacatggaggctgacacggtgctgtcccctgagcaccccgtgcgtctgtggggccggagcacacggtcagggcgcagctcctgcctgtccagccgggccaattccaatctcacactcaccgacaccgagcatgaaaacactgagactgatcatccgggcggcctgcagaaccacgcgcggctccggacgccgccgccgccgctctcgcacgcccacacccccaaccagcaccacgcggcctccattaactccctgaaccggggcaacttcacgccgaggagcaaccccagcccggcccccacggaccactcgctctccggagagccccctgccggcggcgcccaggagcctgcccacgcccaggagaactggctgctcaacagcaacatccccctggagaccagaaacctaggcaagcagccattcctagggacattgcaggacaacctcattgagatggacattctcggcgcctcccgccatgatggggcttacagtgacgggcacttcctcttcaagcctggaggcacctccccgctcttctgcaccacatcaccagggtacccactgacgtccagcacagtgtactctcctccgccccgacccctgccccgcagcaccttcgcccggccggcctttaacctcaagaagccctccaagtactgtaactggaagtgcgcagccctgagcgccatcgtcatctcagccactctggtcatcctgctggcatactttgtggccatgcacctgtttggcctaaactggcacctgcagccgatggaggggcagatgtatgagatcacggaggacacagccagcagttggcctgtgccaaccgacgtctccctatacccctcagggggcactggcttagagacccctgacaggaaaggcaaaggaaccacagaaggaaagcccagtagtttctttccagaggacagtttcatagattctggagaaattgatgtgggaaggcgagcttcccagaagattcctcctggcactttctggagatctcaagtgttcatagaccatcctgtgcatctgaaattcaatgtgtctctgggaaaggcagccctggttggcatttatggcagaaaaggcctccctccttcacatacacagtttgactttgtggagctgctggatggcaggaggctcctaacccaggaggcgcggagcctagaggggaccccgcgccagtctcggggaactgtgcccccctccagccatgagacaggcttcatccagtatttggattcaggaatctggcacttggctttttacaatgacggaaaggagtcagaagtggtttcctttctcaccactgccattgCCTTGCCTCCCCGATTGAAAGAGATGAAAAGCCAGGAATCGGCTGCAGGTTCCAAACTAGTCCTTCGGTGTGAAACCAGTTCTGAATACTCCTCTCTCAGATTCAAGTGGTTCAAGAATGGGAATGAATTGAATCGAAAAAACAAACCACAAAATATCAAGATACAAAAAAAGCCAGGGAAGTCAGAACTTCGCATTAACAAAGCATCACTGGCTGATTCTGGAGAGTATATGTGCAAAGTGATCAGCAAATTAGGAAATGACAGTGCCTCTGCCAATATCACCATCGTGGAATCAAACGAGATCATCACTGGTATGCCAGCCTCAACTGAAGGAGCATATGTGTCTTCAGAGTCTCCCATTAGAATATCAGTATCCACAGAAGGAGCAAATACTTCTTCATCTACATCTACATCCACCACTGGGACAAGCCATCTTGTAAAATGTGCGGAGAAGGAGAAAACTTTCTGTGTGAATGGAGGGGAGTGCTTCATGGTGAAAGACCTTTCAAACCCCTCGAGATACTTGTGCAAGTGCCCAAATGAGTTTACTGGTGATCGCTGCCAAAACTACGTAATGGCCAGCTTCTACAAGCATCTTGGGATTGAATTTATGGAGGCGGAGGAGCTGTACCAGAAGAGAGTGCTGACCATAACCGGCATCTGCATCGCCCTCCTTGTGGTCGGCATCATGTGTGTGGTGGCCTACTGCAAAACCAAGAAACAGCGGAAAAAGCTGCATGACCGTCTTCGGCAGAGCCTTCGGTCTGAACGAAACAATATGATGAACATTGCCAATGGGCCTCACCATCCTAACCCACCCCCCGAGAATGTCCAGCTGGTGAATCAATACGTATCTAAAAACGTCATCTCCAGTGAGCATATTGTTGAGAGAGAAGCAGAGACATCCTTTTCCACCAGTCACTATACTTCCACAGCCCATCACTCCACTACTGTCACCCAGACTCCTAGCCACAGCTGGAGCAACGGACACACTGAAAGCATCCTTTCCGAAAGCCACTCTGTAATCGTGATGTCATCCGTAGAAAACAGTAGGCACAGCAGCCCAACTGGGGGCCCAAGAGGACGTCTTAATGGCACAGGAGGCCCTCGTGAATGTAACAGCTTCCTCAGGCATGCCAGAGAAACCCCTGATTCCTACCGAGACTCTCCTCATAGTGAAAGGTATGTGTCAGCCATGACCACCCCGGCTCGTATGTCACCTGTAGATTTCCACACGCCAAGCTCCCCCAAATCGCCCCCTTCGGAAATGTCTCCACCCGTGTCCAGCATGACGGTGTCCATGCCTTCCATGGCGGTCAGCCCCTTCATGGAAGAAGAGAGACCTCTACTTCTCGTGACACCACCAAGGCTGCGGGAGAAGAAGTTTGACCATCACCCTCAGCAGTTCAGCTCCTTCCACCACAACCCCGCGCATGACAGTAACAGCCTCCCTGCTAGCCCCTTGAGGATAGTGGAGGATGAGGAGTATGAAACGACCCAAGAGTACGAGCCAGCCCAAGAGCCTGTTAAGAAACTCGCCAATAGCCGGCGGGCCAAAAGAACCAAGCCCAATGGCCACATTGCTAACAGATTGGAAGTGGACAGCAACACAAGCTCCCAGAGCAGTAACTCAGAGAGTGAAACAGAAGATGAAAGAGTAGGTGAAGATACGCCTTTCCTGGGCATACAGAACCCCCTGGCAGCCAGTCTTGAGGCAACACCTGCCTTCCGCCTGGCTGACAGCAGGACTAACCCAGCAGGCCGCTTCTCGACACAGGAAGAAATCCAGGCCAGGCTGTCTAGTGTAATTGCTAACCAAGACCCTATTGCTGTATAA MDVKERKPYRSLTRRRDAERRYTSSSADSEEGKAPQKSYSSSETLKAYDQDARLAYGSRVKDIVPQEAEEFCRTGANFTLRELGLEEVTPPHGTLYRTDIGLPHCGYSMGAGSDADMEADTVLSPEHPVRLWGRSTRSGRSSCLSSRANSNLTLTDTEHENTETDHPGGLQNHARLRTPPPPLSHAHTPNQHHAASINSLNRGNFTPRSNPSPAPTDHSLSGEPPAGGAQEPAHAQENWLLNSNIPLETRNLGKQPFLGTLQDNLIEMDILGASRHDGAYSDGHFLFKPGGTSPLFCTTSPGYPLTSSTVYSPPPRPLPRSTFARPAFNLKKPSKYCNWKCAALSAIVISATLVILLAYFVAMHLFGLNWHLQPMEGQMYEITEDTASSWPVPTDVSLYPSGGTGLETPDRKGKGTTEGKPSSFFPEDSFIDSGEIDVGRRASQKIPPGTFWRSQVFIDHPVHLKFNVSLGKAALVGIYGRKGLPPSHTQFDFVELLDGRRLLTQEARSLEGTPRQSRGTVPPSSHETGFIQYLDSGIWHLAFYNDGKESEVVSFLTTAIALPPRLKEMKSQESAAGSKLVLRCETSSEYSSLRFKWFKNGNELNRKNKPQNIKIQKKPGKSELRINKASLADSGEYMCKVISKLGNDSASANITIVESNEIITGMPASTEGAYVSSESPIRISVSTEGANTSSSTSTSTTGTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVMASFYKHLGIEFMEAEELYQKRVLTITGICIALLVVGIMCVVAYCKTKKQRKKLHDRLRQSLRSERNNMMNIANGPHHPNPPPENVQLVNQYVSKNVISSEHIVEREAETSFSTSHYTSTAHHSTTVTQTPSHSWSNGHTESILSESHSVIVMSSVENSRHSSPTGGPRGRLNGTGGPRECNSFLRHARETPDSYRDSPHSERYVSAMTTPARMSPVDFHTPSSPKSPPSEMSPPVSSMTVSMPSMAVSPFMEEERPLLLVTPPRLREKKFDHHPQQFSSFHHNPAHDSNSLPASPLRIVEDEEYETTQEYEPAQEPVKKLANSRRAKRTKPNGHIANRLEVDSNTSSQSSNSESETEDERVGEDTPFLGIQNPLAASLEATPAFRLADSRTNPAGRFSTQEEIQARLSSVIANQDPIAV* FALSE TRUE hsa-mir-708,hsa-mir-5579 chr11:79402022-79402109:-,chr11:79422169-79422226:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE neuregulin 1 1 NSCLC epithelial TSG, fusion translocation 30823 TPCN2::RSF1 ENSG00000162341.18::ENSG00000048649.14 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TPCN2 ENSG00000162341.18 protein_coding + + chr11:69048932-69136316:+ chr11:69057694:+ chr11:68816400-68903784:+ chr11:68825162:+ RSF1 ENSG00000048649.14 protein_coding - - chr11:77660009-77820869:- chr11:77740936:- chr11:77371054-77531915:- chr11:77451981:- chr11:69059708,chr11:69059700 chr11:77743486,chr11:77743494 NA NA chr11:68827176,chr11:68827168 chr11:77454531,chr11:77454539 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PKD_channel|78-98|0.077^Ion_trans|93-315|1.8e-33^PKD_channel|143-170|0.56^PKD_channel|190-315|8.9e-07^Ion_trans|431-513|2.3e-14^PKD_channel|470-494|0.032 PHD|637-651|1.6^PHD|894-938|2.9e-13^DZR|894-938|0.0027^DZR|928-944|0.018 ["RSF1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:8.57Mb] 46 24 46 24 ONLY_REF_SPLICE YES_LDAS 0.907 GT 1.9086 AG 1.8892 ENST00000542467.1 1-546 ENST00000308488.11 373-4326 chr11|+|[0]69048998-69049106[0]|[1]69054033-69054097[2]|[0]69054721-69054797[1]|[2]69055175-69055352[2]|[0]69057578-69057694[2]<==>chr11|-|[2]77666917-77667491[1]|[0]77672042-77672230[1]|[0]77675036-77675256[2]|[1]77676792-77676999[1]|[0]77678086-77678153[2]|[1]77683710-77683819[0]|[2]77685105-77685159[2]|[1]77691159-77691238[0]|[2]77693507-77693611[0]|[2]77698487-77698693[0]|[2]77700721-77702495[1]|[0]77725545-77725699[2]|[1]77740731-77740936[0] atggcggaaccccaggcggagtcggagcccctgctgggcggggcccgcggcggtggcggcgactggccggcggggctgaccacttaccgcagcatccaagtcggccctggtgccgcggccaggtgggacctctgcattgatcaggctgtggtcttcatcgaagatgctattcagtaccgctccatcaaccaccgggtggatgccagctcgatgtggctttaccgacggtattactcgaacgtatgccaacggactttgagcttcaccatcttcttgatcctgtttttggcttttatcgagaccccatcctcactcaccagcacggcggacgtgcgctaccgcgctgctccctgggagccgccctgcggcctgaccgagagtgtcgaggtgctctgcctgctggtctttgcggccgacctctctgtgaagggttacctgttcgggtgggcccatttccagaaaaacctttggctgctgggctacctcgtggtgctggtggtgtctctggtggactggaccgtgtccctgagtctcgtgtgtcatgagTACCTCTGTGAGTGTCAGTTTGATGACAATCTCAAATTCAAGAATATTATTAATGAGGAGGATGCCGATACTATGCGTCTCCAGCCAATTGGTCGAGACAAAGATGGCCTCATGTACTGGTACCAATTGGATCAAGATCACAATGTCAGAATGTACATAGAAGAACAAGATGATCAAGATGGCTCTTCATGGAAATGCATTGTCAGAAATCGAAACGAGTTGGCTGAGACTCTTGCACTCCTGAAAGCACAAATTGATCCTGTACTATTGAAAAACTCTAGCCAACAAGACAACTCTTCTCGGGAAAGTCCCAGCTTAGAGGATGAGGAGACTAAAAAAGAGGAAGAAACACCTAAACAAGAGGAACAGAAAGAAAGTGAAAAGATGAAAAGTGAGGAGCAGCCTATGGATTTAGAAAACCGTTCTACAGCCAATGTTCTAGAAGAGACTACTGTGAAAAAAGAAAAAGAAGATGAAAAGGAACTTGTGAAACTGCCAGTCATAGTGAAGCTAGAAAAACCTTTGCCAGAAAATGAAGAAAAAAAGATTATCAAAGAAGAAAGTGATTCCTTCAAGGAAAATGTCAAACCCATTAAAGTTGAGGTGAAGGAATGTAGAGCAGATCCTAAAGATACCAAAAGTAGCATGGAGAAGCCAGTGGCACAGGAGCCTGAAAGGATCGAATTTGGTGGCAATATTAAATCTTCTCACGAAATTACTGAGAAATCTACTGAAGAAACTGAGAAACTTAAAAATGACCAGCAGGCCAAGATACCACTAAAAAAACGAGAAATTAAACTGAGTGATGATTTTGACAGTCCAGTCAAGGGACCTTTGTGTAAATCAGTTACTCCAACAAAAGAGTTTTTGAAAGATGAAATAAAACAAGAGGAAGAGACTTGTAAAAGGATCTCTACAATCACTGCTTTGGGTCATGAAGGGAAACAGCTGGTAAATGGAGAAGTTAGTGATGAAAGGGTAGCTCCAAATTTTAAGACAGAACCAATAGAGACAAAGTTTTATGAGACAAAGGAAGAGAGCTATAGCCCCTCTAAGGACAGAAATATCATCACGGAGGGAAATGGAACAGAGTCCTTAAATTCTGTCATAACAAGTATGAAAACAGGTGAGCTTGAGAAAGAAACAGCCCCTTTGAGGAAAGATGCAGATAGTTCAATATCAGTCTTAGAGATCCATAGTCAAAAAGCACAAATAGAGGAACCCGATCCTCCAGAAATGGAAACTTCTCTTGATTCTTCTGAGATGGCAAAAGATCTCTCTTCAAAAACTGCTTTATCTTCCACCGAGTCGTGTACCATGAAAGGTGAAGAGAAGTCTCCCAAAACTAAGAAGGATAAGCGCCCACCAATCCTAGAATGTCTTGAAAAGTTAGAGAAGTCCAAAAAGACTTTTCTTGATAAGGACGCACAAAGATTGAGTCCAATACCAGAAGAAGTTCCAAAGAGTACTCTAGAGTCAGAAAAGCCTGGCTCTCCTGAGGCAGCTGAAACTTCTCCACCATCTAATATCATTGACCACTGTGAGAAACTAGCCTCAGAAAAAGAAGTGGTAGAATGCCAGAGTACAAGTACTGTTGGTGGCCAGTCTGTGAAAAAAGTAGACCTAGAAACCCTAAAAGAGGATTCTGAGTTCACAAAGGTAGAAATGGATAATCTGGACAATGCCCAGACCTCTGGCATAGAGGAGCCTTCTGAGACAAAGGGTTCTATGCAAAAAAGCAAATTCAAATATAAGTTGGTTCCTGAAGAAGAAACCACTGCCTCAGAAAATACAGAGATAACCTCTGAAAGGCAGAAAGAGGGCATCAAATTAACAATCAGGATATCAAGTCGGAAAAAGAAGCCCGATTCTCCCCCCAAAGTTCTAGAACCAGAAAACAAGCAAGAGAAGACAGAAAAGGAAGAGGAGAAAACAAATGTGGGTCGTACTTTAAGAAGATCTCCAAGAATATCTAGACCCACTGCAAAAGTGGCTGAGATCAGAGATCAGAAAGCTGATAAAAAAAGAGGGGAAGGAGAAGATGAGGTGGAAGAAGAGTCAACAGCTTTGCAAAAAACTGACAAAAAGGAAATTTTGAAAAAATCAGAGAAAGATACAAATTCTAAAGTAAGCAAGGTAAAACCCAAAGGCAAAGTTCGATGGACTGGTTCTCGGACACGTGGCAGATGGAAATATTCCAGCAATGATGAAAGTGAAGGGTCTGGCAGTGAAAAATCATCTGCAGCTTCAGAAGAGGAGGAAGAAAAGGAAAGTGAAGAAGCCATCCTAGCAGATGATGATGAACCATGCAAAAAATGTGGCCTTCCAAACCATCCTGAGCTAATTCTTCTGTGTGACTCTTGCGATAGTGGATACCATACTGCCTGCCTTCGCCCTCCTCTGATGATCATCCCAGATGGAGAATGGTTCTGCCCACCTTGCCAACATAAACTGCTCTGTGAAAAATTAGAGGAACAGTTGCAGGATTTGGATGTTGCCTTAAAGAAGAAAGAGCGTGCCGAACGAAGAAAAGAACGCTTGGTGTATGTTGGTATCAGTATTGAAAACATCATTCCTCCACAAGAGCCAGACTTTTCTGAAGATCAAGAAGAAAAGAAAAAAGATTCAAAAAAATCCAAAGCAAACTTGCTTGAAAGGAGGTCAACAAGAACAAGGAAATGTATAAGCTACAGATTTGATGAGTTTGATGAAGCAATTGATGAAGCTATTGAAGATGACATCAAAGAAGCCGATGGAGGAGGAGTTGGCCGAGGAAAAGATATCTCCACCATCACAGGTCATCGTGGGAAAGACATCTCTACTATTTTGGATGAAGAAAGAAAAGAAAATAAACGACCCCAGAGGGCAGCTGCTGCTCGAAGGAAGAAACGCCGGCGATTAAATGATCTGGACAGTGATAGCAACCTGGATGAAGAAGAGAGCGAGGATGAATTCAAGATCAGTGATGGATCTCAAGATGAGTTTGTTGTGTCTGATGAAAACCCAGATGAAAGTGAAGAAGATCCGCCATCTAATGATGACAGTGACACTGACTTTTGTAGCCGTAGACTGAGGCGACACCCCTCTCGGCCAATGAGGCAGAGCAGGCGTTTGCGAAGAAAGACCCCAAAGAAAAAATATTCCGATGATGATGAAGAGGAGGAATCTGAGGAGAATAGTAGAGACTCTGAAAGTGACTTCAGTGATGATTTTAGTGATGATTTTGTAGAAACTCGGCGAAGGCGGTCAAGGAGAAATCAGAAAAGACAAATTAACTACAAAGAAGACTCAGAAAGTGACGGTTCCCAGAAGAGTTTGCGACGTGGTAAAGAAATAAGGCGAGTACACAAGCGAAGACTTTCCAGCTCAGAGAGTGAAGAGAGCTATTTGTCCAAGAACTCTGAAGATGATGAGCTAGCTAAAGAATCAAAGCGGTCAGTTCGAAAGCGGGGCCGAAGCACAGACGAGTATTCAGAAGCAGATGAGGAGGAGGAGGAAGAGGAAGGCAAACCATCCCGCAAACGGCTACACCGGATTGAGACGGATGAGGAGGAGAGTTGTGACAATGCTCATGGAGATGCAAATCAGCCTGCCCGTGACAGCCAGCCTAGGGTCCTGCCCTCAGAACAAGAGAGCACCAAGAAGCCCTACCGGATAGAAAGTGATGAGGAAGAGGACTTTGAAAATGTAGGCAAAGTGGGGAGCCCATTGGACTATAGCTTAGTGGACTTACCTTCAACCAATGGACAGAGCCCTGGCAAAGCCATTGAGAACTTGATTGGCAAGCCTACTGAGAAGTCTCAGACCCCCAAGGACAACAGCACAGCCAGTGCAAGCCTAGCCTCCAATGGGACAAGTGGTGGGCAGGAGGCAGGAGCACCAGAAGAGGAGGAAGATGAGCTTTTGAGAGTGACTGACCTTGTTGATTATGTCTGTAACAGTGAACAGTTATAA MAEPQAESEPLLGGARGGGGDWPAGLTTYRSIQVGPGAAARWDLCIDQAVVFIEDAIQYRSINHRVDASSMWLYRRYYSNVCQRTLSFTIFLILFLAFIETPSSLTSTADVRYRAAPWEPPCGLTESVEVLCLLVFAADLSVKGYLFGWAHFQKNLWLLGYLVVLVVSLVDWTVSLSLVCHEYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKLPVIVKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSSMEKPVAQEPERIEFGGNIKSSHEITEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEIKQEEETCKRISTITALGHEGKQLVNGEVSDERVAPNFKTEPIETKFYETKEESYSPSKDRNIITEGNGTESLNSVITSMKTGELEKETAPLRKDADSSISVLEIHSQKAQIEEPDPPEMETSLDSSEMAKDLSSKTALSSTESCTMKGEEKSPKTKKDKRPPILECLEKLEKSKKTFLDKDAQRLSPIPEEVPKSTLESEKPGSPEAAETSPPSNIIDHCEKLASEKEVVECQSTSTVGGQSVKKVDLETLKEDSEFTKVEMDNLDNAQTSGIEEPSETKGSMQKSKFKYKLVPEEETTASENTEITSERQKEGIKLTIRISSRKKKPDSPPKVLEPENKQEKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSKVKPKGKVRWTGSRTRGRWKYSSNDESEGSGSEKSSAASEEEEEKESEEAILADDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERAERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYLSKNSEDDELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRLHRIETDEEESCDNAHGDANQPARDSQPRVLPSEQESTKKPYRIESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAIENLIGKPTEKSQTPKDNSTASASLASNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30825 PPP6R3::TENM4 ENSG00000110075.15::ENSG00000149256.16 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1268 FALSE NA FALSE NA PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68460827:+ chr11:68228199-68382802:+ chr11:68228295:+ TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:79215909:- chr11:78363874-79152074:- chr11:78926954:- chr11:68491442,chr11:68491433 chr11:79272433,chr11:79272447 NA NA chr11:68258910,chr11:68258901 chr11:78983478,chr11:78983492 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:10.04Mb] 21 1 21 0.88 ONLY_REF_SPLICE YES_LDAS 0.2835 GT 1.8323 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30834 TRNT1::CNTN4 ENSG00000072756.18::ENSG00000144619.15 MDAMB175VII SRR8615766 SRR8652108 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1267 FALSE NA FALSE NA TRNT1 ENSG00000072756.18 protein_coding + + chr3:3126933-3153435:+ chr3:3140648:+ chr3:3168617-3195119:+ chr3:3182332:+ CNTN4 ENSG00000144619.15 protein_coding + + chr3:2098813-3057959:+ chr3:2819486:+ chr3:2140497-3099643:+ chr3:2861170:+ chr3:3141074 chr3:2802667 NA NA chr3:3182758 chr3:2844351 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PolyA_pol|98-221|1.8e-39^PolyA_pol_RNAbd|227-239|0.41^PolyA_pol_RNAbd|255-306|4.5e-14 I-set-PARTIAL|~359-401|8.8e-18^Ig_3-PARTIAL|~359-388|2.1e-16^ig-PARTIAL|~359-392|7.4e-08^Ig_2-PARTIAL|~359-396|1.3e-11^V-set-PARTIAL|~359-401|3.4e-06^Ig_5-PARTIAL|~359-389|0.067^Sp38-PARTIAL|~359-390|0.069^Ig_C17orf99-PARTIAL|~359-400|0.011^C2-set_2-PARTIAL|~359-370|0.00047^Ig_4-PARTIAL|~359-388|0.002^Ig_6|361-388|0.028^Adeno_E3_CR1|363-389|0.77^C2-set|372-401|0.016^I-set|410-494|3.1e-18^Ig_3|416-481|4.3e-17^ig|417-488|1.5e-14^Ig_2|417-489|6.8e-10^Ig_C17orf99|421-493|0.00078^Ig_5|422-481|0.019^C2-set_2|423-446|10^Ig_4|423-478|0.0043^Sp38|436-502|1.8e-06^V-set|437-494|4.6e-07^V-set_CD47|440-488|0.0044^Ig_6|448-478|0.017^C2-set|449-494|0.21^Adeno_E3_CR1|456-482|0.0009^Ig_3|500-578|1.7e-12^I-set|501-593|8.5e-11^C1-set|502-540|0.024^ig|503-581|1.8e-10^Ig_2|503-592|1.1e-06^V-set|503-586|2.6e-06^V-set_CD47|513-579|0.0027^Ig_5|556-582|0.34^Sp38|557-581|0.098^Adeno_E3_CR1|559-581|0.29^Ig_6|560-580|0.01^Tissue_fac|595-645|0.0044^fn3|599-686|1e-16^Pur_ac_phosph_N|604-678|1.2e-05^fn3|703-789|0.00029^Pur_ac_phosph_N|708-725|1.3^V-set|778-818|3.7^fn3|804-889|1.7e-15^Pur_ac_phosph_N|814-896|0.00073^Ig_6|835-857|7.1^Interfer-bind|836-882|0.0016^Ig_3|840-867|5.4^I-set|846-894|0.2^Tissue_fac|896-960|0.00036^ig|901-920|4.4^Ig_5|902-936|2.1^C2-set_2|902-916|2.4^fn3|904-984|8.1e-06^Pur_ac_phosph_N|909-953|3.1^Ig_3|931-931|9.2^Interfer-bind|935-961|0.42 ["CNTN4:Oncogene"];["Klijn_CellLines","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:+:[68960] 7 1 7 1 ONLY_REF_SPLICE YES_LDAS 0.1037 GT 1.5546 AG 1.7819 ENST00000698413.1 1-598 ENST00000427331.5 359-3081 chr3|+|[0]3129041-3129188[0]|[1]3136681-3136797[0]|[1]3137260-3137453[2]|[0]3140510-3140648[0]<==>chr3|+|[1]2819486-2819581[0]|[1]2866752-2866949[0]|[1]2883145-2883247[1]|[2]2887040-2887224[0]|[1]2900685-2900821[2]|[0]2902876-2903005[0]|[1]2925629-2925779[1]|[2]2988345-2988472[0]|[1]3026102-3026277[2]|[0]3030855-3030975[0]|[1]3034632-3034790[0]|[1]3037179-3037328[0]|[1]3038933-3039003[2]|[0]3040037-3040271[0]|[1]3042310-3042422[2]|[0]3042977-3043163[0]|[1]3043592-3043704[2]|[0]3053807-3053975[0]|[1]3056120-3056220[2] atgctgaggtgcctgtatcattggcacaggccagtgctgaaccgtaggtggagtaggctgtgccttccgaagcagtatctattcacaatgaagttgcagtctcccgaattccagtcacttttcacagaaggactgaagagtctgacaggtcttgctctgtcacccaggctggagtgcagtggcacgatcatagctcaccgcagccttgaactcctgggctcaagccatcctcccacctcagcctcccaagtagctgggactacagaattatttgtcaaagagaatcacgaattaagaatagcaggaggagcagtgagggatttattaaatggagtaaagcctcaggatatagattttgccaccactgctacccctactcaaatgaaggagatgtttcagtcggctgggattcggatgataaacaacagaggagaaaagcacggaacaattactgccaggcttcatgaagaaaattttgagattactacactacggattgatgtcaccactgatggaagacatgctgaggtagaatttacaactgactggcagaaagatgcggaacgcagagatctcactataaattctatgtttttagATCTTGACAACTTTAAAACAAGAACAAGAAGCACTGTGTCTGTCCGTCGAGGTCAAGGAATGGTGCTACTGTGTGGCCCGCCACCCCATTCTGGAGAGCTGAGTTATGCCTGGATCTTCAATGAATACCCTTCCTATCAGGATAATCGCCGCTTTGTTTCTCAAGAGACTGGGAATCTGTATATTGCCAAAGTAGAAAAATCAGATGTTGGGAATTATACCTGTGTGGTTACCAATACCGTGACAAACCACAAGGTCCTGGGGCCACCTACACCACTAATATTGAGAAATGATGGAGTGATGGGTGAATATGAGCCCAAAATAGAAGTGCAGTTCCCAGAAACAGTTCCGACTGCAAAAGGAGCAACGGTGAAGCTGGAATGCTTTGCTTTAGGAAATCCAGTACCAACTATTATCTGGCGAAGAGCTGATGGAAAGCCAATAGCAAGGAAAGCCAGAAGACACAAGTCAAATGGAATTCTTGAGATCCCTAATTTTCAGCAGGAGGATGCTGGTTTATATGAATGTGTAGCTGAAAATTCCAGAGGGAAAAATGTAGCAAGGGGACAGCTAACTTTCTATGCTCAACCTAATTGGATTCAAAAAATAAATGATATTCACGTGGCCATGGAAGAAAATGTCTTTTGGGAATGTAAAGCAAATGGAAGGCCTAAGCCTACATACAAGTGGCTAAAAAATGGCGAACCTCTGCTAACTCGGGATAGAATTCAAATTGAGCAAGGAACACTCAACATAACAATAGTGAACCTCTCAGATGCTGGCATGTATCAGTGTTTGGCAGAGAATAAACATGGAGTTATCTTTTCCAACGCAGAGCTTAGTGTTATAGCTGTAGGTCCAGATTTTTCAAGAACACTCTTGAAAAGAGTAACTCTTGTCAAAGTGGGAGGTGAAGTTGTCATTGAGTGTAAGCCAAAAGCGTCTCCAAAACCTGTTTACACCTGGAAGAAAGGAAGGGATATATTAAAAGAAAATGAAAGAATTACCATTTCTGAAGATGGAAACCTCAGAATCATCAACGTTACTAAATCAGACGCTGGGAGTTATACCTGTATAGCCACTAACCATTTTGGAACTGCTAGCAGTACTGGAAACTTGGTAGTGAAAGATCCAACAAGGGTAATGGTACCCCCTTCCAGTATGGATGTCACTGTTGGAGAGAGTATTGTTTTACCGTGCCAGGTAACGCATGATCACTCGCTAGACATCGTGTTTACTTGGTCATTTAATGGACACCTGATAGACTTTGACAGAGATGGGGACCACTTTGAAAGAGTTGGAGGGCAGGATTCAGCTGGTGATTTGATGATCCGAAACATCCAACTGAAGCATGCTGGGAAATATGTCTGCATGGTCCAAACAAGTGTGGACAGGCTATCTGCTGCTGCAGACCTGATTGTAAGAGGTCCTCCAGGTCCCCCAGAGGCTGTGACAATAGACGAAATCACAGATACCACTGCTCAGCTCTCCTGGAGACCCGGGCCTGACAACCACAGCCCCATCACCATGTATGTCATTCAAGCCAGGACTCCATTCTCCGTGGGCTGGCAAGCAGTCAGTACAGTCCCAGAACTCATTGATGGGAAGACATTCACAGCGACCGTGGTGGGTTTGAACCCTTGGGTTGAATATGAATTCCGCACAGTTGCAGCCAACGTGATTGGGATTGGGGAGCCCAGCCGCCCCTCAGAGAAACGGAGAACAGAAGAAGCTCTCCCCGAAGTCACACCAGCGAATGTCAGTGGTGGCGGAGGCAGCAAATCTGAACTGGTTATAACCTGGGAGACGGTCCCTGAGGAATTACAGAATGGTCGAGGCTTTGGTTATGTGGTGGCCTTCCGGCCCTACGGTAAAATGATCTGGATGCTGACAGTGCTGGCCTCAGCTGATGCCTCTAGATACGTGTTCAGGAATGAGAGCGTGCACCCCTTCTCTCCCTTTGAGGTTAAAGTAGGTGTCTTCAACAACAAAGGAGAAGGCCCTTTCAGTCCCACCACGGTGGTGTATTCTGCAGAAGAAGAACCCACCAAACCACCAGCCAGTATCTTTGCCAGAAGTCTTTCTGCCACAGATATTGAAGTTTTCTGGGCCTCCCCACTGGAGAAGAATAGAGGACGAATACAAGGTTATGAGGTTAAATATTGGAGACATGAAGACAAAGAAGAAAATGCTAGAAAAATACGAACAGTTGGAAATCAGACATCAACAAAAATCACGAACTTAAAAGGCAGTGTGCTGTATCACTTAGCTGTCAAGGCATATAATTCTGCTGGGACAGGCCCCTCTAGTGCAACAGTCAATGTGACAACCCGAAAGCCACCACCAAGTCAACCCCCCGGAAACATCATATGGAATTCATCAGACTCCAAAATTATCCTGAATTGGGATCAAGTGAAGGCCCTGGATAATGAGTCGGAAGTAAAAGGATACAAAGTCTTGTACAGATGGAACAGACAAAGCAGCACATCTGTCATTGAAACAAATAAAACATCGGTGGAGCTTTCTTTGCCTTTCGATGAAGATTATATAATAGAAATTAAGCCATTCAGCGACGGAGGAGATGGCAGCAGCAGTGAACAAATTCGAATTCCAAAGATATCAAATGCCTACGCGAGAGGATCTGGGGCTTCCACTTCGAATGCATGTACGCTGTCAGCCATCAGTACAATAATGATTTCCCTCACAGCTAGGTCCAGTTTATGA MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTGLALSPRLECSGTIIAHRSLELLGSSHPPTSASQVAGTTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLDLDNFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPTAKGATVKLECFALGNPVPTIIWRRADGKPIARKARRHKSNGILEIPNFQQEDAGLYECVAENSRGKNVARGQLTFYAQPNWIQKINDIHVAMEENVFWECKANGRPKPTYKWLKNGEPLLTRDRIQIEQGTLNITIVNLSDAGMYQCLAENKHGVIFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECKPKASPKPVYTWKKGRDILKENERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVVKDPTRVMVPPSSMDVTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDGDHFERVGGQDSAGDLMIRNIQLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNHSPITMYVIQARTPFSVGWQAVSTVPELIDGKTFTATVVGLNPWVEYEFRTVAANVIGIGEPSRPSEKRRTEEALPEVTPANVSGGGGSKSELVITWETVPEELQNGRGFGYVVAFRPYGKMIWMLTVLASADASRYVFRNESVHPFSPFEVKVGVFNNKGEGPFSPTTVVYSAEEEPTKPPASIFARSLSATDIEVFWASPLEKNRGRIQGYEVKYWRHEDKEENARKIRTVGNQTSTKITNLKGSVLYHLAVKAYNSAGTGPSSATVNVTTRKPPPSQPPGNIIWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSVIETNKTSVELSLPFDEDYIIEIKPFSDGGDGSSSEQIRIPKISNAYARGSGASTSNACTLSAISTIMISLTARSSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30854 KIFC3::CNGB1 ENSG00000140859.16::ENSG00000070729.14 BFTC909 SRR8615769 SRR8639207 KIDNEY carcinoma primary star-fusion TRUE TRUE TRUE 1271 FALSE NA FALSE NA KIFC3 ENSG00000140859.16 protein_coding - - chr16:57758217-57863053:- chr16:57794999:- chr16:57792129-57896957:- chr16:57828911:- CNGB1 ENSG00000070729.14 protein_coding - - chr16:57882340-57971128:- chr16:57931878:- chr16:57916244-58005032:- chr16:57965782:- chr16:57792294,chr16:57792298 chr16:57933699,chr16:57933700 NA NA chr16:57826206,chr16:57826210 chr16:57967603,chr16:57967604 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","GUO2018CR_TCGA","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr16:0.02Mb];LOCAL_REARRANGEMENT:-:[19287] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1073 GT 1.9219 AG 1.8892 ENST00000563028.1 1-462 ENST00000251102.13 1373-3756 chr16|-|[2]57794999-57795141[1]|[0]57798072-57798282[0]|[2]57862729-57862836[0]<==>chr16|-|[2]57884164-57884457[0]|[2]57887855-57888074[2]|[1]57897397-57897543[2]|[1]57897796-57897914[0]|[2]57901352-57901435[0]|[2]57901528-57901625[1]|[0]57903822-57903981[0]|[2]57904734-57904875[2]|[1]57911753-57911875[2]|[1]57912930-57912994[0]|[2]57915249-57915335[0]|[2]57916129-57916179[0]|[2]57917268-57917476[1]|[0]57919099-57919254[1]|[0]57920387-57920544[2]|[1]57923273-57923380[2]|[1]57931716-57931878[1] atggcacagatggagtttcttttcaggaagaacactctgacagctgcatggaagcccagacaccaggaaaccctcagattggaggctggtgtcccggagcagtgcaaggctgcctggtgccccgaggaggctgctgagccccaggccatggtcccctctcgcaggacgtggaacctgggagccacgccctcgctgcggggcctgtggagagtgggccgggccccggagcccgagccggggatggctcgccccgccccagccccagccagcccggccgcccgccctttcccacacaccggcccggggaggttgagaactgggcgtggaaaagataccccagtctgcggtgacgaggactccagtgcccgaagtgcagctcgcccagccctagctcagtgccgagcccttagcgtggactgggctggccccggaagcccccacgggctctacctgaccctgcagTGCCTGCCACGAAACAGCACCCAGAAGTGCAGGTGGAAGATACTGATGCTGATAGCTGCCCCCTCATGGCAGAAGAGAATCCACCCTCAACCGTGTTGCCGCCACCGTCTCCTGCCAAATCAGACACCCTTATAGTCCCAAGCTCAGCCTCGGGGACACACAGGAAGAAGCTGCCCTCTGAGGATGATGAGGCTGAAGAGCTCAAGGCGTTGTCACCAGCAGAGTCCCCAGTGGTTGCCTGGTCTGACCCCACCACCCCGAAGGACACTGATGGCCAGGACCGTGCGGCCTCCACGGCCAGCACAAATAGCGCCATCATCAACGACCGGCTCCAGGAGCTGGTGAAGCTCTTCAAGGAGCGGACAGAGAAAGTGAAGGAGAAACTCATTGACCCTGACGTCACCTCTGATGAGGAGAGCCCCAAGCCCTCCCCAGCCAAGAAAGCCCCAGAGCCAGCTCCAGACACAAAGCCCGCTGAAGCCGAGCCAGTGGAAGAGGAGCACTATTGCGACATGCTCTGCTGCAAGTTCAAACACCGCCCCTGGAAGAAGTACCAGTTTCCCCAGAGCATTGACCCGCTGACCAACCTGATGTATGTCCTATGGCTGTTCTTCGTGGTGATGGCCTGGAATTGGAACTGTTGGCTGATTCCCGTGCGCTGGGCCTTCCCCTACCAGACCCCGGACAACATCCACCACTGGCTGCTGATGGATTACCTATGCGACCTCATCTACTTCCTGGACATCACCGTGTTCCAGACACGCCTGCAGTTTGTCAGAGGCGGGGACATCATTACGGACAAAAAGGACATGCGAAATAACTACCTGAAGTCTCGCCGCTTCAAGATGGACCTGCTCAGCCTCCTGCCCTTGGATTTTCTCTATTTGAAAGTCGGTGTGAACCCCCTCCTCCGCCTGCCCCGCTGTTTAAAGTACATGGCCTTCTTCGAGTTTAACAGCCGCCTGGAATCCATCCTCAGCAAAGCCTACGTGTACAGGGTCATCAGGACCACAGCCTACCTTCTCTACAGCCTGCATTTGAATTCCTGTCTTTATTACTGGGCATCGGCCTATCAGGGCCTCGGCTCCACTCACTGGGTTTACGATGGCGTGGGAAACAGTTATATTCGCTGTTACTACTTTGCTGTGAAGACCCTCATCACCATCGGGGGGCTGCCTGACCCCAAGACACTCTTTGAAATTGTCTTCCAGCTGCTGAATTATTTCACGGGCGTCTTTGCTTTCTCTGTGATGATCGGACAGATGAGAGATGTGGTAGGGGCCGCCACCGCCGGACAGACCTACTACCGCAGCTGCATGGACAGCACGGTGAAGTACATGAATTTCTACAAGATCCCCAAGTCCGTGCAGAACCGCGTCAAGACCTGGTACGAGTACACCTGGCACTCGCAAGGCATGCTGGATGAGTCAGAGCTGATGGTGCAGCTTCCAGACAAGATGCGGCTGGACCTCGCCATCGACGTGAACTACAACATCGTTAGCAAAGTCGCACTCTTTCAGGGCTGTGACCGGCAGATGATCTTTGACATGCTGAAGAGGCTTCGCTCTGTTGTCTACCTGCCCAACGACTATGTGTGCAAGAAGGGGGAGATCGGCCGTGAGATGTACATCATCCAGGCAGGGCAAGTGCAGGTCTTGGGCGGCCCTGATGGGAAATCTGTGCTGGTGACGCTGAAAGCTGGATCTGTGTTTGGAGAAATAAGCTTGCTGGCTGTTGGGGGCGGGAACCGGCGCACGGCCAACGTGGTGGCGCACGGGTTTACCAACCTCTTCATCCTGGATAAGAAGGACCTGAATGAGATTTTGGTGCATTATCCTGAGTCTCAGAAGTTACTCCGGAAGAAAGCCAGGCGCATGCTGAGAAGCAACAATAAGCCCAAGGAGGAGAAGAGCGTGCTGATCCTTCCACCCCGGGCGGGCACCCCAAAGCTCTTCAACGCTGCCCTCGCTATGACAGGAAAGATGGGTGGCAAGGGGGCAAAAGGCGGCAAACTTGCTCACCTCCGGGCCCGGCTCAAAGAACTGGCCGCGCTGGAGGCGGCTGCAAAGCAGCAAGAGTTGGTGGAACAGGCCAAGAGCTCGCAAGACGTCAAGGGAGAGGAAGGCTCCGCCGCCCCAGACCAGCACACGCACCCAAAGGAGGCCGCCACCGACCCACCCGCGCCCCGGACGCCCCCCGAGCCCCCGGGGTCTCCACCGAGCTCTCCACCGCCTGCCTCCCTTGGGAGGCCGGAGGGAGAGGAGGAGGGGCCGGCCGAGCCCGAAGAGCACTCGGTGAGGATCTGCATGAGCCCGGGCCCGGAGCCGGGAGAGCAGATCCTGTCGGTGAAGATGCCGGAGGAAAGGGAGGAGAAGGCGGAGTAA MAQMEFLFRKNTLTAAWKPRHQETLRLEAGVPEQCKAAWCPEEAAEPQAMVPSRRTWNLGATPSLRGLWRVGRAPEPEPGMARPAPAPASPAARPFPHTGPGRLRTGRGKDTPVCGDEDSSARSAARPALAQCRALSVDWAGPGSPHGLYLTLQCLPRNSTQKCRWKILMLIAAPSWQKRIHPQPCCRHRLLPNQTPL*SQAQPRGHTGRSCPLRMMRLKSSRRCHQQSPQWLPGLTPPPRRTLMARTVRPPRPAQIAPSSTTGSRSW*SSSRSGQRK*RRNSLTLTSPLMRRAPSPPQPRKPQSQLQTQSPLKPSQWKRSTIATCSAASSNTAPGRSTSFPRALTR*PT*CMSYGCSSW*WPGIGTVG*FPCAGPSPTRPRTTSTTGC*WITYATSSTSWTSPCSRHACSLSEAGTSLRTKRTCEITT*SLAASRWTCSASCPWIFSI*KSV*TPSSACPAV*STWPSSSLTAAWNPSSAKPTCTGSSGPQPTFSTACI*IPVFITGHRPIRASAPLTGFTMAWETVIFAVTTLL*RPSSPSGGCLTPRHSLKLSSSC*IISRASLLSL**SDR*EMW*GPPPPDRPTTAAAWTAR*ST*ISTRSPSPCRTASRPGTSTPGTRKACWMSQS*WCSFQTRCGWTSPST*TTTSLAKSHSFRAVTGR*SLTC*RGFALLSTCPTTMCARRGRSAVRCTSSRQGKCRSWAALMGNLCW*R*KLDLCLEK*ACWLLGAGTGARPTWWRTGLPTSSSWIRRT*MRFWCIILSLRSYSGRKPGAC*EATISPRRRRAC*SFHPGRAPQSSSTLPSL*QERWVARGQKAANLLTSGPGSKNWPRWRRLQSSKSWWNRPRARKTSRERKAPPPQTSTRTQRRPPPTHPRPGRPPSPRGLHRALHRLPPLGGRRERRRGRPSPKSTR*GSA*ARARSRESRSCR*RCRRKGRRRRS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Lung,Liver no_match TRUE Lung adenocarcinoma LUNG no_match 57828911|57819376 TRUE|FALSE 57921978|57921978 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30856 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1273 TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["Klijn_CellLines","ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 1782 0 1782 0 ONLY_REF_SPLICE YES_LDAS 18.6068 GT 1.9219 AG 1.5628 ENST00000519776.5 1-22 ENST00000418519.6 408-1251 chr8|-|[0]124539025-124539046[0]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0]|[2]39906111-39906271[1]|[0]39906961-39906987[1]|[0]39908176-39908214[1]|[0]39908958-39909042[0]|[2]39909756-39909924[2] atgagtcgcttcaagtttatcgGAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAGGGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCTTGTCTTCCCCAACAAGGAGACGATGAATATTCATTTCAGGGGCAAAACAAAATCCTTTCCAGAAGAGAAGGATGGTGCTTCATCCTGTTTAGGAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGAGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA MSRFKFIGS*RGNYPFHSDQLIREKTCIW*QKLWRR*RRKP*KATGNINFGARSLRAISAINTRAKGK*PSPQIGS*AIE*SSLSSPTRRR*IFISGAKQNPFQKRRMVLHPV*ESLWVRRIPET*RRSWRTWRVSSRT*QRRREKMC*TPSLSASARRIFGRI*SKEYLRS*FPGSYTWRTQTSLS*AAFLMLLGSW*KRVQKPFWTSWMPC*SCLKSSSLWLRPWRRGPFLC*RTR*NLSWSRTGMSWPAVLLTWTMTLRHEFSVRCMLLSLSCWSWLRGLPLSLP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30857 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 549 0 549 0 ONLY_REF_SPLICE YES_LDAS 5.7324 GT 1.9219 AG 1.9086 ENST00000519232.5 1-13 ENST00000394175.6 823-1185 chr8|-|[2]124539025-124539037[2]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0] ttcaagtttatcgGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA SSLSVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30858 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1274 TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39906271:- chr17:38060848-38076107:- chr17:38062524:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 525 0 525 0 ONLY_REF_SPLICE YES_LDAS 5.4818 GT 1.9219 AG 1.7819 ENST00000519776.5 1-22 ENST00000394175.6 662-1185 chr8|-|[0]124539025-124539046[0]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0]|[2]39906111-39906271[1] atgagtcgcttcaagtttatcgGAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGAGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA MSRFKFIGKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30860 TATDN1::GSDMB ENSG00000147687.19::ENSG00000073605.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2265 TRUE 868 TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124538928:- chr8:125500726-125551699:- chr8:125551169:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- chr8:124536857,chr8:124536536,chr8:124536859,chr8:124536859 chr17:39911423,chr17:39911423,chr17:39911422,chr17:39911403 NA NA chr8:125549098,chr8:125548777,chr8:125549100,chr8:125549100 chr17:38067676,chr17:38067676,chr17:38067675,chr17:38067656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Hydrolase-PARTIAL|49-110~|4.3e-06^TatD_DNase-PARTIAL|58-110~|7.3e-34 none ["Klijn_CellLines","ChimerPub","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 234 44 234 44 ONLY_REF_SPLICE YES_LDAS 2.9027 GT 1.7465 AG 1.5628 ENST00000519232.5 1-110 ENST00000418519.6 408-1251 chr8|-|[0]124538928-124539037[2]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0]|[2]39906111-39906271[1]|[0]39906961-39906987[1]|[0]39908176-39908214[1]|[0]39908958-39909042[0]|[2]39909756-39909924[2] ttcaagtttatcggtaagaggagcgttttccacgcccttgggtctttctgacttgtcccgggcgtcggtcaccaaggtcacaggacccaggaattgcgccctccggcattGAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAGGGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCTTGTCTTCCCCAACAAGGAGACGATGAATATTCATTTCAGGGGCAAAACAAAATCCTTTCCAGAAGAGAAGGATGGTGCTTCATCCTGTTTAGGAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGAGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA SSLSVRGAFSTPLGLSDLSRASVTKVTGPRNCALRH*S*RGNYPFHSDQLIREKTCIW*QKLWRR*RRKP*KATGNINFGARSLRAISAINTRAKGK*PSPQIGS*AIE*SSLSSPTRRR*IFISGAKQNPFQKRRMVLHPV*ESLWVRRIPET*RRSWRTWRVSSRT*QRRREKMC*TPSLSASARRIFGRI*SKEYLRS*FPGSYTWRTQTSLS*AAFLMLLGSW*KRVQKPFWTSWMPC*SCLKSSSLWLRPWRRGPFLC*RTR*NLSWSRTGMSWPAVLLTWTMTLRHEFSVRCMLLSLSCWSWLRGLPLSLP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Thyroid exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30861 CCDC85C::SETD3 ENSG00000205476.9::ENSG00000183576.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1278 TRUE 2267 TRUE 869 CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536015:- chr14:99966527-100070544:- chr14:100002352:- SETD3 ENSG00000183576.13 protein_coding - - chr14:99397748-99480889:- chr14:99413934:- chr14:99864085-99947226:- chr14:99880271:- chr14:99523163,chr14:99523165 chr14:99430829,chr14:99430828 NA NA chr14:99989500,chr14:99989502 chr14:99897166,chr14:99897165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exonuc_VII_L|6-146|0.00071^CCDC85|13-219|1e-100^AMH_N|47-96|1.7e-06^DivIC|59-103|0.0029^TSC22|66-88|0.0097^TSC22|115-147|0.0022^DivIC|117-153|0.0015^GP38|160-219|0.0013^TSC22|271-282|2.5^DivIC|271-291|0.32^Exonuc_VII_L|341-371|0.69 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.02Mb];NEIGHBORS[19291] 191 52 191 49.37 ONLY_REF_SPLICE YES_LDAS 2.5098 GT 1.8892 AG 1.6729 ENST00000380243.9 1-867 ENST00000331768.10 676-1785 chr14|-|[2]99536015-99536088[1]|[0]99603167-99603959[0]<==>chr14|-|[2]99398679-99399125[0]|[2]99400099-99400259[1]|[0]99404225-99404310[2]|[1]99405205-99405371[0]|[2]99406516-99406590[0]|[2]99412951-99413065[2]|[1]99413876-99413934[0] atggctaagcccgcggcgacggcggcggcggcgtcggaggagctgagccaggtgccggacgaggagctgctgcgctggagcaaggaggagctggcgcggcggctgcggcgcgccgagggcgagaaggtgggcctcatgctggagcacggcggcctgatgcgcgacgtgaaccggcggctgcagcagcacctgctggagatccgcggcctcaaggacgtgaaccagcggctgcaggacgacaaccaggagctgcgcgagctctgctgcttcctcgacgacgaccggcagaaggggcgcaagctggcgcgcgagtggcagcgcttcgggcgccacgcggccggcgccgtgtggcacgaggtggcccgctcgcagcagaagctgcgcgagctcgaggcgcgccaggaggccctgctgcgcgagaacctggagctcaaggagctggtgctgctgctggacgaggagcgcgcggcactggcggcgacgggggccgcaagcggtggcggcggcggcgggggcggcgccggctcccgcagctccatcgacagccaggccagcctgagcgggccgctgtcgggtggcgcgcccggcgcgggggcccgcgacgtgggcgacggcagcagtacgtccagcgcgggcagcggcggcagccccgaccaccaccaccacgtcccacccccgctgctgccccccgggccgcacaaggcccccgacggcaaggcaggagccacacgtcggtccctggacgacttgtcggcgccgccgcaccaccgcagcatccccaacggcctgcacgatccctcatccacctacatcaggcaactggagagcaaagtgaggctgctggagggtgacaagctcctcgcacagACCCATCCTCATGCCAACAAACTACCCTTGAAGGATTCTTTCACTTACGAGGACTACAGGTGGGCAGTCTCTTCTGTTATGACGAGGCAAAACCAAATTCCCACAGAGGATGGTTCCCGCGTGACCCTGGCTCTGATTCCTTTATGGGATATGTGTAACCACACCAACGGCCTGATCACTACTGGTTACAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGATTTTCGGGCTGGAGAGCAGATTTACATTTTTTATGGCACTCGATCCAACGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACAATAACTCACACGACAGAGTGAAAATAAAGCTTGGAGTGAGTAAAAGTGACAGACTCTACGCCATGAAGGCCGAGGTCTTGGCTCGTGCCGGCATCCCCACTTCCAGTGTTTTTGCATTGCATTTTACCGAGCCGCCCATCTCTGCTCAGCTTTTGGCTTTTCTCCGAGTATTCTGTATGACTGAAGAAGAACTGAAAGAACACTTGCTGGGAGACAGCGCTATTGATAGAATCTTCACCTTGGGGAACTCGGAATTTCCTGTTAGCTGGGACAACGAGGTCAAACTTTGGACATTTCTTGAAGATAGAGCCTCACTTCTTTTAAAAACATATAAAACAACTATTGAGGAAGATAAATCCGTCTTGAAAAACCACGATCTTTCTGTTCGTGCAAAAATGGCCATCAAATTGCGCTTAGGTGAGAAAGAGATTTTGGAAAAAGCAGTAAAGAGTGCAGCTGTCAACCGGGAATACTATCGCCAACAGATGGAGGAAAAGGCTCCGCTTCCCAAATATGAAGAGAGTAACCTTGGGCTGTTGGAGAGCAGCGTGGGGGACTCGAGGCTCCCCCTGGTCTTGAGAAACCTCGAGGAGGAGGCTGGAGTGCAGGATGCCTTGAACATCAGAGAGGCAATCAGCAAAGCAAAGGCCACAGAAAACGGGCTTGTAAACGGTGAAAACTCTATCCCTAATGGGACCAGGTCCGAAAATGAAAGTCTCAATCAAGAAAGTAAAAGAGCAGTTGAAGACGCCAAAGGATCTTCTTCAGACAGCACTGCTGGAGTTAAGGAGTAG MAKPAATAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAATGAASGGGGGGGGAGSRSSIDSQASLSGPLSGGAPGAGARDVGDGSSTSSAGSGGSPDHHHHVPPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIPNGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Large_intestine exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30863 ANKHD1::PCDH1 ENSG00000131503.21::ENSG00000156453.14 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1280 FALSE NA FALSE NA ANKHD1 ENSG00000131503.21 protein_coding + + chr5:140401814-140539856:+ chr5:140445975:+ chr5:139781399-139919441:+ chr5:139825560:+ PCDH1 ENSG00000156453.14 protein_coding - - chr5:141853090-141879246:- chr5:141854436:- chr5:141232655-141258811:- chr5:141234001:- chr5:140447349,chr5:140447486,chr5:140447348 chr5:141857384,chr5:141857386,chr5:141857385 NA NA chr5:139826934,chr5:139827071,chr5:139826933 chr5:141236949,chr5:141236951,chr5:141236950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame T6SS_VasJ|153-259|7.8e-05^MM_CoA_mutase|190-233|0.055^ScdA_N|207-220|0.36^Ank_4|208-258|1.2e-05^Ank_5|208-242|0.00014^Ank_2|209-301|1.4e-18^Ank_3|211-232|0.074^Ank|212-233|0.027^Ank_5|224-266|1.2e-06^Ank|238-267|1.4e-05^Ank_3|238-264|0.0018^Ank_4|240-292|1.9e-10^Ank_5|267-312|9.7e-11^Ank_3|273-299|1.3e-05^Ank|274-301|2.1e-09^Ank_4|274-325|2.9e-14^Ank_2|276-366|1.4e-26^Ank|305-333|4.2e-09^Ank_3|305-331|3.4e-07^ScdA_N|305-323|3.5^Ank_5|324-369|1.4e-09^T6SS_VasJ|333-395|0.25^Ank|337-365|2e-10^Ank_3|337-365|2.5e-08^ScdA_N|338-357|0.59^Ank_4|339-392|4.7e-14^Ank_2|368-433|1.1e-17^Ank_5|368-409|4.6e-08^Ank_3|373-397|1.4e-06^Ank|374-401|3.1e-08^T6SS_VasJ|397-446|0.54^Ank|406-433|9.1e-09^Ank_4|406-458|1.4e-12^Ank_3|406-432|1.1e-06^Ank_5|407-445|3.2e-05^Ank_2|439-500|3.7e-17^Ank_3|439-465|0.0077^Ank|440-468|3.8e-07^Ank_4|440-491|1.3e-12^ScdA_N|447-469|0.0014^Ank_5|457-512|1.4e-10^Ank_3|470-499|1.5e-08^Ank|471-501|9.8e-13^Ank_4|472-525|4e-13^Ank_2|504-564|2.6e-14^Ank|506-532|4.1e-06^Ank_3|506-532|0.00099^ScdA_N|513-532|0.039^Ank_5|524-575|6e-10^Ank_4|535-588|6.2e-16^Ank_2|536-597|6.3e-17^Ank|537-565|2.5e-10^Ank_3|537-562|9.5e-06^MM_CoA_mutase|549-617|5.1e-05^Ank|568-597|1.3e-09^Ank_3|568-595|8e-08^Ank_5|570-599|0.00055^Ank_4|571-597|3.1e-06^ScdA_N|572-587|0.97 none ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:1.31Mb] 99 31 99 31 ONLY_REF_SPLICE YES_LDAS 1.3574 GT 1.9656 AG 1.6895 ENST00000394723.7 1-1147 ENST00000287008.8 3320-3714 chr5|+|[0]140401968-140402273[2]|[0]140436104-140436257[0]|[1]140438461-140438617[1]|[2]140440119-140440266[2]|[0]140440995-140441142[0]|[1]140445742-140445975[0]<==>chr5|-|[2]141854042-141854436[1] atgctgactgatagcggaggcggcggcacctcctttgaggaggacctggactctgtggctccgcgatccgccccagctggggcctcggagccgcctccgccgggaggggtcggtctggggatccgcaccgtgaggctctttggggaggccgggccagcgtcgggagtcggcagcagcggcggcggcggcagcggcagcggtacgggcggaggggacgcggcgctggatttcaagttggcggctgccgtgctgaggaccgggggtggaggtggtgcctctggcagtgacgaggacgaagtgtccgaggttgaatcatttattttggaccaagaagatctggataacccagtgcttaaaacaacatcagagatattcttatcaagtactgcagaaggagcagacttacgcactgtggatccagagacacaggcacgactagaagcattgctagaagcagcaggaattggcaaattgtcaactgctgatggtaaagcttttgcagatcctgaggtactccggagactgacatcctcagttagttgtgcactggatgaagctgctgctgcactgacacggatgaaagcagaaaacagccacaatgcaggacaagtggacactcgcagtctagcagaagcttgttcagatggggatgttaatgctgttcgtaaattgctagatgaaggcagaagtgtaaatgaacatacagaagaaggagaaagcctgctgtgtttggcttgttcagcagggtattatgaattagcacaagtattgcttgctatgcatgctaatgttgaagatcgagggaataaaggagacataactcccctgatggcagcttccagtggaggttacttagatattgtgaaattattacttcttcatgatgctgatgtcaactcccagtctgcaacaggaaacactgcgctaacttatgcatgtgctggaggatttgttgacattgttaaagtgctccttaatgaaggtgcaaatatagaagatcataatgaaaatggacatactcccttaatggaagcagccagtgcaggtcatgtggaagttgcaagagttcttttagatcatggtgcaggcatcaacactcattctaatgaattcaaagaaagtgctctaacacttgcttgctacaaagACCTTCGCCCTTTGCCTGATGTCGCCATGACAGGCACATGTACCCGGGAGTGCAGTGAGTTTGGCCACTCTGACACATGCTGGATGCCTGGCCAGTCATCTCCCAGCCGCCGGACCAAGAGCAGCGCCCTCAAACTCTCCACCTTCGTGCCTTACCAGGACCGAGGAGGGCAGGAGCCTGCGGGCGCCGGCAGCCCCAGCCCCCCGGAAGACCGGAACACCAAAACGGCCCCCGTGCGCCTCCTGCCCTCCTACAGTGCCTTCTCCCACAGTAGCCATGATTCCTGCAAGGACTCGGCCACCTTGGAGGAAATCCCCCTGACCCAGACCTCGGACTTCCCACCCGCAGCCACACCGGCATCTGCCCAGACGGCCAAGCGCGAGATCTACCTGTGA MLTDSGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPASGVGSSGGGGSGSGTGGGDAALDFKLAAAVLRTGGGGGASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMKAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30864 CSE1L::ENSG00000283529 ENSG00000124207.17::ENSG00000283529.2 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2268 TRUE 870 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49340320:+ chr20:47934874-47956974:+ chr20:47956857:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CSE1L:Oncogene"] 66 35 66 30.39 ONLY_REF_SPLICE YES_LDAS 1.0064 GT 1.5058 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30865 SUMF1::LRRFIP2 ENSG00000144455.14::ENSG00000093167.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1282 FALSE NA FALSE NA SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4376330:- chr3:3742498-4508957:- chr3:4418014:- LRRFIP2 ENSG00000093167.18 protein_coding - - chr3:37052626-37183689:- chr3:37129149:- chr3:37094117-37225180:- chr3:37170640:- chr3:4321770,chr3:4321776 chr3:37141903,chr3:37141906 NA NA chr3:4363454,chr3:4363460 chr3:37183394,chr3:37183397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FGE-sulfatase|90-346|3.7e-80^DNA_ligase_IV|147-157|0.011^DNA_ligase_IV|341-357|0.0013 LRRFIP|239-263|3.4^LRRFIP|292-459|5.9e-49^AAA_13|350-488|0.003^IFT57|353-415|1.6e-05^DUF724|362-447|0.00092^TMIE|366-382|3.5^Syntaxin-6_N|367-445|0.12^NPV_P10|387-393|0.22^IFT57|429-480|0.05^NPV_P10|436-480|0.0083^Syntaxin-6_N|439-480|0.095^DUF724|441-518|0.018^LRRFIP|458-646|7.9e-49^Syntaxin-6_N|459-524|0.0011^NPV_P10|486-518|0.23^AAA_13|566-697|9.8e-06^Syntaxin-6_N|576-593|3.5^DUF724|618-698|9.4e-06^Syntaxin-6_N|624-666|0.017^IFT57|625-711|0.017^NPV_P10|641-696|8.6e-05^Syntaxin-6_N|648-713|0.00023^TMIE|672-712|0.00012^LRRFIP|674-696|0.33 ["Klijn_CellLines","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:32.59Mb] 64 29 64 29 ONLY_REF_SPLICE YES_LDAS 0.9711 GT 1.9899 AG 1.7465 ENST00000448413.5 1-1014 ENST00000336686.9 91-2166 chr3|-|[2]4376330-4376389[0]|[2]4410865-4410978[0]|[2]4417128-4417242[2]|[1]4418010-4418132[2]|[1]4420064-4420146[0]|[2]4449266-4449340[0]|[2]4452876-4453049[0]|[2]4466976-4467245[0]<==>chr3|-|[2]37053851-37053961[0]|[2]37054411-37054515[0]|[2]37055086-37055165[1]|[0]37058790-37058910[0]|[2]37063742-37063791[1]|[0]37065810-37065942[0]|[2]37066224-37066325[0]|[2]37072790-37072882[0]|[2]37075024-37075116[0]|[2]37083636-37083806[0]|[2]37091467-37091538[0]|[2]37094792-37094908[0]|[2]37096616-37096660[0]|[2]37102924-37103013[0]|[2]37105455-37105523[0]|[2]37108073-37108129[0]|[2]37108637-37108684[0]|[2]37109527-37109571[0]|[2]37109653-37109703[0]|[2]37110991-37111065[0]|[2]37112915-37112980[0]|[2]37115054-37115095[0]|[2]37121492-37121536[0]|[2]37121635-37121691[0]|[2]37127630-37127680[0]|[2]37129063-37129149[0] atggctgcgcccgcactagggctggtgtgtggacgttgccctgagctgggtctcgtcctcttgctgctgctgctctcgctgctgtgtggagcggcagggagccaggaggccgggaccggtgcgggcgcggggtcccttgcgggttcttgcggctgcggcacgccccagcggcctggcgcccatggcagttcggcagccgctcaccgatactcgcgggaggctaacgctccgggccccgtacccggagagcggcaactcgcgcactcaaagatggtccccatccctgctggagtatttacaatgggcacagatgatcctcagataaagcaggatggggaagcacctgcgaggagagttactattgatgccttttacatggatgcctatgaagtcagtaatactgaatttgagaagtttgtgaactcaactggctatttgacagaggctgagaagtttggcgactcctttgtctttgaaggcatgttgagtgagcaagtgaagaccaatattcaacaggcagttgcagctgctccctggtggttacctgtgaaaggcgctaactggagacacccagaagggcctgactctactattctgcacaggccggatcatccagttctccatgtgtcctggaatgatgcggttgcctactgcacttgggcagggaagcggctgcccacggaagctgagtgggaatacagctgtcgaggaggcctgcataatagacttttcccctggggcaacaaactgcagcccaaaggccagcattatgccaacatttggcagggcgagtttccggtgaccaacactggtgaggatggcttccaaggaactgcgcctgttgatgccttccctcccaatggttatggcttatacaacatagtggggaacgcatgggaatggacttcagactggtggactgttcatcattctgttgaagaaacgcttaacccaaaaggtcccccttctgggaaagaccgagtgaagaaaggtggatcctacatgtgccataggGCAGAGGCAAGGCTGGCAGCAAAACGGGCTGCCCGGGCAGAAGCAAGAGATATACGCATGAGAGAACTGGAACGACAACAAAAAGAGTACTCTCTTCATTCCTTTGATCGGAAGTGGGGACAGATTCAGAAGTGGCTGGAAGATTCGGAAAGGGCCAGGTATTCCCACCGGTCCAGTCACCATCGTCCTTATCTGGGAGTTGAGGATGCATTGTCCATTCGAAGTGTTGGCAGTCACAGGTATGATATGTTCAAGGATAGATCATCAAGACTTTCATCATTAAATCATTCTTACAGTCACTCTCATGGAATGAAGAAGAGGTCTTCTGATTCTCATAAAGACCTACTGAGTGGCCTCTACTTTGACCAGAGAAACTATAGCAGTCTTAGACATAGCAAACCCACCTCTGCCTACTACACTCGGCAGTCTTCTTCCCTGTACAGTGACCCTCTGGCAACATATAAGAGTGACAGGGCCTCTCCTACTGCAAATTCTGGTCTGCTGAGAAGTGCCAGTCTGGCATCATTGTACAATGGTGGATTATATAACCCTTATGGTCCTCGAACTCCATCTGAATGCAGTTATTATTCATCAAGAATAAGTTCAGCCCGAAGCAGTCCAGGGTTTACCAACGATGACACTGCAAGCATTGTGTCTTCTGATCGTGCCAGTCGTGGACGAAGGGAGAGTGTGGTATCTGCCGCTGATTATTTCAGTCGCTCCAATCGTAGGGGAAGTGTTGTCTCTGAGGTGGATGATATCAGTATCCCAGATTTGTCCAGCTTGGATGAAAAATCTGACAAACAGTATGCTGAAAATTATACAAGACCTTCATCTCGAAATTCTGCCTCAGCAACAACCCCTCTAAGTGGAAACTCATCCAGACGAGGAAGTGGGGACACCAGCAGCTTAATAGATCCAGACACTTCATTAAGTGAATTGCGGGATATCTATGACCTTAAGGACCAGATACAGGATGTAGAAGGGAGATACATGCAGGGGCTTAAAGAACTAAAGGAATCTTTGTCTGAAGTGGAAGAAAAATACAAGAAAGCCATGGTTTCCAATGCACAGTTAGACAATGAGAAGAACAATTTGATCTACCAAGTAGACACACTCAAGGATGTTATTGAAGAGCAGGAGGAACAGATGGCAGAATTTTATAGAGAAAATGAAGAAAAATCAAAGGAGTTAGAAAGGCAGAAACATATGTGTAGTGTGCTGCAGCATAAGATGGAAGAACTTAAAGAAGGCCTGCGGCAAAGAGATGAGCTTATTGAGGAGAAGCAGCGCATGCAGCAGAAAATAGACACCATGACAAAAGAGGTGTTTGACCTCCAGGAGACACTTCTTTGGAAAGATAAAAAAATTGGGGCCCTAGAGAAACAGAAAGAATACATTGCCTGCCTTAGGAATGAGCGAGATATGCTCAGAGAGGAGCTGGCTGACCTGCAGGAGACAGTGAAGACGGGAGAGAAACATGGCTTAGTTATAATCCCCGATGGCACTCCCAATGGTGATGTCAGTCATGAACCAGTGGCTGGAGCCATCACTGTTGTGTCTCAGGAAGCTGCTCAGGTCTTGGAGTCAGCAGGAGAAGGGCCATTAGATGTAAGGCTACGAAAACTTGCTGGAGAGAAGGAAGAACTACTGTCACAGATTAGAAAACTGAAGCTTCAGTTAGAGGAGGAACGACAGAAATGCTCCAGGAATGATGGCACAGTGGGTGACCTGGCAGGACTGCAGAATGGCTCAGACTTGCAGTTCATCGAAATGCAGAGAGATGCCAATAGACAAATTAGCGAATACAAATTTAAGCTTTCAAAAGCAGAACAGGATATAACTACCTTGGAGCAAAGTATTAGCCGGCTTGAGGGACAGGTTCTGAGATATAAAACTGCTGCTGAGAATGCTGAGAAAGTTGAAGATGAATTGAAAGCAGAAAAACGGAAGCTACAACGAGAGTTACGAACAGCACTGGACAAGATTGAGGAGATGGAGATGACCAACAGCCACCTGGCCAAGCGGCTGGAGAAGATGAAGGCCAATAGGACAGCACTTCTGGCCCAGCAGTAG MAAPALGLVCGRCPELGLVLLLLLLSLLCGAAGSQEAGTGAGAGSLAGSCGCGTPQRPGAHGSSAAAHRYSREANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHRAEARLAAKRAARAEARDIRMRELERQQKEYSLHSFDRKWGQIQKWLEDSERARYSHRSSHHRPYLGVEDALSIRSVGSHRYDMFKDRSSRLSSLNHSYSHSHGMKKRSSDSHKDLLSGLYFDQRNYSSLRHSKPTSAYYTRQSSSLYSDPLATYKSDRASPTANSGLLRSASLASLYNGGLYNPYGPRTPSECSYYSSRISSARSSPGFTNDDTASIVSSDRASRGRRESVVSAADYFSRSNRRGSVVSEVDDISIPDLSSLDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRDIYDLKDQIQDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEKQRMQQKIDTMTKEVFDLQETLLWKDKKIGALEKQKEYIACLRNERDMLREELADLQETVKTGEKHGLVIIPDGTPNGDVSHEPVAGAITVVSQEAAQVLESAGEGPLDVRLRKLAGEKEELLSQIRKLKLQLEEERQKCSRNDGTVGDLAGLQNGSDLQFIEMQRDANRQISEYKFKLSKAEQDITTLEQSISRLEGQVLRYKTAAENAEKVEDELKAEKRKLQRELRTALDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30866 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1283 TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:141001125:- chr8:141667999-142012315:- chr8:142011224:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr8:0.20Mb] 62 28 62 21.43 ONLY_REF_SPLICE YES_LDAS 0.8712 GT 1.7056 AG 1.3996 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 TRUE|FALSE,TRUE|FALSE|FALSE,FALSE|TRUE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|TRUE|TRUE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30870 CCDC85C::SETD3 ENSG00000205476.9::ENSG00000183576.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1279 TRUE 2267 TRUE 869 CCDC85C ENSG00000205476.9 protein_coding - - chr14:99500190-99604207:- chr14:99536015:- chr14:99966527-100070544:- chr14:100002352:- SETD3 ENSG00000183576.13 protein_coding - - chr14:99397748-99480889:- chr14:99406590:- chr14:99864085-99947226:- chr14:99872927:- chr14:99523163,chr14:99523165 chr14:99430829,chr14:99430828 NA NA chr14:99989500,chr14:99989502 chr14:99897166,chr14:99897165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Exonuc_VII_L|6-146|0.00071^CCDC85|13-219|1e-100^AMH_N|47-96|1.7e-06^DivIC|59-103|0.0029^TSC22|66-88|0.0097^TSC22|115-147|0.0022^DivIC|117-153|0.0015^GP38|160-219|0.0013^TSC22|271-282|2.5^DivIC|271-291|0.32^Exonuc_VII_L|341-371|0.69 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.02Mb];NEIGHBORS[19291] 36 19 36 2.63 ONLY_REF_SPLICE YES_LDAS 0.4034 GT 1.8892 AG 1.9329 ENST00000380243.9 1-867 ENST00000331768.10 850-1785 chr14|-|[2]99536015-99536088[1]|[0]99603167-99603959[0]<==>chr14|-|[2]99398679-99399125[0]|[2]99400099-99400259[1]|[0]99404225-99404310[2]|[1]99405205-99405371[0]|[2]99406516-99406590[0] atggctaagcccgcggcgacggcggcggcggcgtcggaggagctgagccaggtgccggacgaggagctgctgcgctggagcaaggaggagctggcgcggcggctgcggcgcgccgagggcgagaaggtgggcctcatgctggagcacggcggcctgatgcgcgacgtgaaccggcggctgcagcagcacctgctggagatccgcggcctcaaggacgtgaaccagcggctgcaggacgacaaccaggagctgcgcgagctctgctgcttcctcgacgacgaccggcagaaggggcgcaagctggcgcgcgagtggcagcgcttcgggcgccacgcggccggcgccgtgtggcacgaggtggcccgctcgcagcagaagctgcgcgagctcgaggcgcgccaggaggccctgctgcgcgagaacctggagctcaaggagctggtgctgctgctggacgaggagcgcgcggcactggcggcgacgggggccgcaagcggtggcggcggcggcgggggcggcgccggctcccgcagctccatcgacagccaggccagcctgagcgggccgctgtcgggtggcgcgcccggcgcgggggcccgcgacgtgggcgacggcagcagtacgtccagcgcgggcagcggcggcagccccgaccaccaccaccacgtcccacccccgctgctgccccccgggccgcacaaggcccccgacggcaaggcaggagccacacgtcggtccctggacgacttgtcggcgccgccgcaccaccgcagcatccccaacggcctgcacgatccctcatccacctacatcaggcaactggagagcaaagtgaggctgctggagggtgacaagctcctcgcacagATCACTACTGGTTACAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGATTTTCGGGCTGGAGAGCAGATTTACATTTTTTATGGCACTCGATCCAACGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACAATAACTCACACGACAGAGTGAAAATAAAGCTTGGAGTGAGTAAAAGTGACAGACTCTACGCCATGAAGGCCGAGGTCTTGGCTCGTGCCGGCATCCCCACTTCCAGTGTTTTTGCATTGCATTTTACCGAGCCGCCCATCTCTGCTCAGCTTTTGGCTTTTCTCCGAGTATTCTGTATGACTGAAGAAGAACTGAAAGAACACTTGCTGGGAGACAGCGCTATTGATAGAATCTTCACCTTGGGGAACTCGGAATTTCCTGTTAGCTGGGACAACGAGGTCAAACTTTGGACATTTCTTGAAGATAGAGCCTCACTTCTTTTAAAAACATATAAAACAACTATTGAGGAAGATAAATCCGTCTTGAAAAACCACGATCTTTCTGTTCGTGCAAAAATGGCCATCAAATTGCGCTTAGGTGAGAAAGAGATTTTGGAAAAAGCAGTAAAGAGTGCAGCTGTCAACCGGGAATACTATCGCCAACAGATGGAGGAAAAGGCTCCGCTTCCCAAATATGAAGAGAGTAACCTTGGGCTGTTGGAGAGCAGCGTGGGGGACTCGAGGCTCCCCCTGGTCTTGAGAAACCTCGAGGAGGAGGCTGGAGTGCAGGATGCCTTGAACATCAGAGAGGCAATCAGCAAAGCAAAGGCCACAGAAAACGGGCTTGTAAACGGTGAAAACTCTATCCCTAATGGGACCAGGTCCGAAAATGAAAGTCTCAATCAAGAAAGTAAAAGAGCAGTTGAAGACGCCAAAGGATCTTCTTCAGACAGCACTGCTGGAGTTAAGGAGTAG MAKPAATAAAASEELSQVPDEELLRWSKEELARRLRRAEGEKVGLMLEHGGLMRDVNRRLQQHLLEIRGLKDVNQRLQDDNQELRELCCFLDDDRQKGRKLAREWQRFGRHAAGAVWHEVARSQQKLRELEARQEALLRENLELKELVLLLDEERAALAATGAASGGGGGGGGAGSRSSIDSQASLSGPLSGGAPGAGARDVGDGSSTSSAGSGGSPDHHHHVPPPLLPPGPHKAPDGKAGATRRSLDDLSAPPHHRSIPNGLHDPSSTYIRQLESKVRLLEGDKLLAQITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKAPLPKYEESNLGLLESSVGDSRLPLVLRNLEEEAGVQDALNIREAISKAKATENGLVNGENSIPNGTRSENESLNQESKRAVEDAKGSSSDSTAGVKE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Large_intestine exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30871 FOXK2::NARF ENSG00000141568.21::ENSG00000141562.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1288 FALSE NA FALSE NA FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82596191:+ chr17:80477589-80602538:+ chr17:80554067:+ NARF ENSG00000141562.19 protein_coding + + chr17:82458180-82490537:+ chr17:82468764:+ chr17:80416056-80448413:+ chr17:80426640:+ chr17:82596752,chr17:82596746 chr17:82468110,chr17:82468101 NA NA chr17:80554628,chr17:80554622 chr17:80425986,chr17:80425977 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr17:0.03Mb];LOCAL_REARRANGEMENT:+:[29176] 34 4 34 3.8 ONLY_REF_SPLICE YES_LDAS 0.3947 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 80478183|80478183|80478183,80542064 FALSE|FALSE|FALSE,FALSE 80436676|80436447|80443373,80441592 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30876 TAF2::COLEC10 ENSG00000064313.13::ENSG00000184374.3 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1289 FALSE NA FALSE NA TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119795532:- chr8:120743014-120845103:- chr8:120807772:- COLEC10 ENSG00000184374.3 protein_coding + + chr8:118995452-119108455:+ chr8:119102348:+ chr8:120007691-120120694:+ chr8:120114587:+ chr8:119791394,chr8:119791399 chr8:119095040,chr8:119095038 NA NA chr8:120803634,chr8:120803639 chr8:120107279,chr8:120107277 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Peptidase_M1_N|126-240|1e-08^Peptidase_M1|285-395|9.8e-08 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.62Mb] 26 10 26 10 ONLY_REF_SPLICE YES_LDAS 0.3759 GT 1.8062 AG 1.5628 ENST00000686098.1 1-1191 ENST00000332843.3 293-834 chr8|-|[2]119795532-119795631[2]|[1]119796990-119797103[2]|[1]119797662-119797846[0]|[2]119801794-119802025[2]|[1]119803878-119804019[1]|[0]119806283-119806401[2]|[1]119819346-119819506[0]|[2]119831677-119831731[2]|[1]119832482-119832564[0]<==>chr8|+|[1]119102348-119102401[0]|[1]119103800-119103895[0]|[1]119105800-119106191[2] atgccgctgactggtgtagagcccgccagaatgaacaggaagaaaggagacaagggctttgaaagcccaaggccatataaattaacccatcaggtcgtctgcatcaacaacataaatttccagagaaaatctgttgtgggatttgtggaactgactatatttcccacagttgcaaacttgaatagaatcaagttgaacagcaaacagtgtagaatataccgagtaaggatcaatgatttagaggctgcttttatttataatgacccaaccttggaagtttgtcacagtgaatcaaaacagagaaacctcaattatttttccaatgcttatgcagctgcagttagtgctgtggaccctgatgcaggaaatggagaactttgcattaaggttccatcagagctatggaaacacgttgatgagttaaaggtcctgaagatacacatcaatttttctttggatcagcccaaaggaggtcttcattttgtggtacccagtgtagagggaagtatggcagagagaggtgctcatgttttctcttgtgggtatcaaaattctacaagattttggttcccttgtgttgattcatactctgaattgtgtacatggaaattagaatttacagtagatgctgcaatggttgctgtttctaatggcgatttggtggagacagtgtatactcatgatatgaggaagaaaactttccattatatgcttaccattcctacagcagcgtcaaatatctccttggccattggaccatttgaaatactggtagatccatacatgcatgaggttactcatttttgtttgccccaacttcttccattgctgaaacataccacatcataccttcatgaagtctttgaattttatgaagaaattcttacatgtcgttacccatactcctgttttaagactgtcttcattgatgaggcttatgttgaagtggctgcttatgcttccatgagcatttttagcacaaatcttttacacagtgccatgattatagatgagacacctttgactagaaggtgtttagcccaatccttggcccagcagttttttggttgtttcatatctagaatgtcttggtctgatgaatgggtgctgaagggaatttcaggctatatctatggactttggatgaaaaaaacttttggtgttaatgagtaccgccattggattaaagagGTGACAAAGGGGAAAAAGGTTTGCTTGGAATACCTGGAGAAAAAGGCAAAGCAGGTACTGTCTGTGATTGTGGAAGATACCGGAAATTTGTTGGACAACTGGATATTAGTATTGCTCGGCTCAAGACATCTATGAAGTTTGTCAAGAATGTGATAGCAGGGATTAGGGAAACTGAAGAGAAATTCTACTACATCGTGCAGGAAGAGAAGAACTACAGGGAATCCCTAACCCACTGCAGGATTCGGGGTGGAATGCTAGCCATGCCCAAGGATGAAGCTGCCAACACACTCATCGCTGACTATGTTGCCAAGAGTGGCTTCTTTCGGGTGTTCATTGGCGTGAATGACCTTGAAAGGGAGGGACAGTACATGTTCACAGACAACACTCCACTGCAGAACTATAGCAACTGGAATGAGGGGGAACCCAGCGACCCCTATGGTCATGAGGACTGTGTGGAGATGCTGAGCTCTGGCAGATGGAATGACACAGAGTGCCATCTTACCATGTACTTTGTCTGTGAGTTCATCAAGAAGAAAAAGTAA MPLTGVEPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEVTKGKKVCLEYLEKKAKQVLSVIVEDTGNLLDNWILVLLGSRHL*SLSRM**QGLGKLKRNSTTSCRKRRTTGNP*PTAGFGVEC*PCPRMKLPTHSSLTMLPRVASFGCSLA*MTLKGRDSTCSQTTLHCRTIATGMRGNPATPMVMRTVWRC*ALADGMTQSAILPCTLSVSSSRRKS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30879 ATAD5::TLK2 ENSG00000176208.9::ENSG00000146872.19 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1291 FALSE NA FALSE NA ATAD5 ENSG00000176208.9 protein_coding + + chr17:30831966-30895869:+ chr17:30879487:+ chr17:29158984-29222887:+ chr17:29206505:+ TLK2 ENSG00000146872.19 protein_coding + + chr17:62458658-62615481:+ chr17:62573215:+ chr17:60536019-60692842:+ chr17:60650576:+ chr17:30883846,chr17:30884308,chr17:30883844 chr17:62570895,chr17:62570892,chr17:62570890 NA NA chr17:29210864,chr17:29211326,chr17:29210862 chr17:60648256,chr17:60648253,chr17:60648251 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame nSTAND3|134-227|1.7^Rad17|230-281|1.4^Rad17|705-761|1.8^nSTAND3|746-781|0.36^Rad17|1051-1081|0.0029^AAA_16|1125-1152|3.4e-05^nSTAND3|1125-1147|0.00036^AAA_22|1126-1181|6e-07^Rad17|1126-1164|6.7e-05^T2SSE|1126-1150|3.6e-05^AAA_7|1127-1179|1.2e-05^Ribosomal_S19e|1127-1183|3.1e-05^AAA_14|1127-1175|0.00017^DEAD|1127-1146|0.003^NACHT|1127-1147|0.013^AAA|1128-1205|1.1e-09^NTPase_1|1128-1173|3.3e-05^AAA_5|1128-1172|0.00016^DEAD|1262-1334|0.11^Rad17|1269-1335|0.36^AAA|1278-1339|0.02^AAA_14|1286-1339|1.1^AAA_22|1295-1335|1.9^nSTAND3|1313-1338|6.4^NACHT|1551-1590|0.02^AAA_14|1559-1575|7.7^DEAD|1562-1591|0.73^AAA_16|1563-1581|2.2 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:31.56Mb] 20 7 20 7 ONLY_REF_SPLICE YES_LDAS 0.2819 GT 1.8323 AG 1.6895 ENST00000321990.5 1-4077 ENST00000326270.13 969-2319 chr17|+|[0]30832348-30832413[2]|[0]30834148-30836048[1]|[2]30837206-30837314[2]|[0]30840617-30840781[2]|[0]30843913-30844039[0]|[1]30844835-30844916[1]|[2]30855143-30855327[0]|[1]30856955-30857112[2]|[0]30858161-30858323[0]|[1]30860433-30860612[0]|[1]30865704-30865800[1]|[2]30868333-30868412[0]|[1]30869248-30869390[2]|[0]30869496-30869646[0]|[1]30876374-30876550[0]|[1]30877416-30877549[2]|[0]30878003-30878096[0]|[1]30879423-30879487[2]<==>chr17|+|[2]62573215-62573367[1]|[2]62574345-62574410[1]|[2]62576709-62576775[2]|[0]62578477-62578574[1]|[2]62580111-62580192[2]|[0]62586135-62586226[1]|[2]62596585-62596674[1]|[2]62600651-62600820[0]|[1]62602042-62602180[1]|[2]62606130-62606241[2]|[0]62608041-62608148[2]|[0]62612392-62612565[2] atggtgggggtcctggccatggcggctgcagctgctccgcctcccgtgaaggactgcgagattgagccatgcaaaaagcgaaagaaagatgatgacacatctacctgcaaaacaattacaaaatatttatcaccactagggaagactagagacagggtttttgctccaccaaaacctagtaatattctggattattttagaaagacttcacccacaaatgagaagacacaattagggaaagagtgcaagataaagtcacctgaatcagtacctgttgacagcaacaaagactgtacgacacctttggaaatgttctcaaatgtagagtttaagaagaaaagaaagagggttaatttatctcatcaactaaataatattaaaactgaaaatgaagctccaattgaaattagtagcgacgatagcaaagaagactatagtttaaataatgattttgtggaaagtagtacttctgttttacgttacaagaaacaagtagaggtacttgcagaaaacattcaagatacaaaaagtcaaccaaatactatgacctccctgcaaaattctaaaaaagtaaatcctaaacaagggaccacaaaaaatgacttcaaaaagttgagaaaaaggaaatgcagagatgtagtagatctatctgaaagcttacccttggcagaggaactaaatttgcttaaaaaagatggtaaagatactaaacagatggagaatactacaagccatgcaaactctagagataacgtaactgaagcagcccagttaaatgatagtataataactgtctcatatgaggaatttttaaaaagtcacaaggaaaataaagtggaagagataccagactctacaatgtcaatttgtgttccttctgaaactgtcgacgaaatagtcaaaagtggttatataagtgaatcagaaaactccgaaatttcccagcaggtacgctttaagacagttactgttcttgcacaggttcaccctattccgcccaaaaagacagggaaaataccccgaattttcttgaaacaaaagcaatttgaaatggaaaatagtttatctgatcctgagaatgaacagacagttcagaaaagaaaatctaatgttgttatacaggaggaagaattagaattggctgttttggaagctggaagttctgaagctgtgaaaccaaaatgcactctagaagaaagacagcaatttatgaaagcatttaggcagccagcatcagatgcacttaaaaatggagttaaaaagtcttctgataagcagaaagaccttaatgaaaaatgtctatatgaagtaggaagagatgataattctaaaaaaatcatggaaaattctggtatccaaatggtttcaaaaaatggcaatttacagttacacactgataaaggaagttttctgaaggagaaaaataaaaagctaaagaagaagaataagaaaacattagatactggggctattccaggcaaaaacagagagggaaacactcaaaagaaagaaacaacctttttcttaaaagagaaacaatatcaaaatagaatgagtttaagacaaaggaaaacagagtttttcaaaagcagcactttatttaacaatgaaagtcttgtttatgaagatatagcaaatgatgaccttctaaaggtttcctctctgtgtaacaataataaattgtcaagaaaaaccagcataccagttaaagatattaagcttacacagtctaaagctgaatctgaagccagcttgctaaatgtttccacgcccaagtcaactagaagatctggaagaattagcagcacacctactacagaaaccattagaggtattgattctgacgatgtacaagataatagtcaactaaaggcttccactcaaaaagcagccaacttatcggaaaagcacagcttatatacagcagaattaataacagtaccctttgattcagagagccctattagaatgaaattcaccagaattagtactcccaaaaaatctaagaaaaaatctaacaaaagatctgagaaatctgaagcaactgatggaggttttacttctcagattagaaaggcaagcaatacttcaaaaaacatatcaaaagcaaaacaattgattgaaaaagcaaaagctttacacatcagtaggtcaaaggtgactgaagaaatagcgatacccttaaggcgctcctctagacatcagacacttcctgaaaggaagaaattgtcagaaacagaagattctgttataataatagattcaagtcctactgctttaaagcatccagagaaaaatcagaagaaacttcagtgtttgaatgatgtgctaggaaaaaaacttaacacatccactaaaaatgtacctggaaaaatgaaagtcgctcctttatttcttgtcagaaaagcacaaaaagcagctgatcctgtccctagttttgatgaaagcagtcaagatacatctgaaaaatctcaggattgtgatgttcaatgtaaagcaaagcgtgacttcctaatgagtggtttgccagatttgttgaaacggcaaattgcaaagaaagctgctgcgctggatgtgtacaatgcagtgagtaccagtttccagagagtcgtacatgtgcaacaaaaggatgatgggtgttgtttgtggcatttgaaaccaccctcttgtcctctcttaactaaatttaaagaactgaacactaaagtaatagatctctcaaaatgtggtattgctcttggtgaattttcaacattgaattcaaagttgaaaagcggtaactctgctgctgtgttcatgaggacaaggaaggaatttactgaagaagtaagaaatcttttgcttgaggaaattaggtggtcaaatcctgaattttcattgaaaaaatattttcccttactcctaaaaaaacaaattgagcaccaagtactttcttccgagtgtcatagtaaacaagaactggaggctgatgtcagccataaagaaaccaaaaggaaactcgtagaagcagaaaattctaagtcaaaaagaaagaaaccaaatgagtattcaaaaaatctggagaagaccaataggaagtcagaagaacttagcaaaagaaacaactcttctgggataaagctagattcttccaaagattctggaactgaagacatgctttggacagaaaagtatcaacctcagactgccagtgaacttataggaaatgagttagctataaaaaagttacatagttggttgaaagactggaaaagaagagctgaattggaagaaaggcagaatctgaagggaaaaagagatgagaaacatgaagatttctcgggtggcatagactttaaaggcagttcagatgatgaagaagagagtcgtctttgcaatactgtccttataacagggccaacaggagtgggaaaaactgctgcagtgtatgcttgtgcccaggagcttggatttaagatatttgaagtgaatgcctcttcccagcgcagtggtagacaaattctatctcagttgaaggaagctactcagtcccatcaagtagacaaacaaggtgtaaactcacaaaaaccctgtttttttaatagctactacataggcaagtcaccaaaaaaaataagctcccctaagaaagttgttacatcaccaagaaaagttcctccaccatcaccaaaaagtagtggaccaaagcgagcacttcctcccaaaaccttggcaaattattttaaagtatctcccaaacctaaaaataatgaagaaataggaatgcttctggaaaataataaaggaataaaaaattcttttgaacagaaacaaattactcagactaaatctacaaatgcaactaattcaaatgtcaaagacgttggagctgaagaacccagcagaaaaaatgcaacatctcttattctttttgaggaggttgatgtaatttttgatgaagatgctgggtttttgaatgcaatcaaaacattcatggcaacaactaaacgacctgtaatccttactacaagtgacccaacatttagtttaatgtttgatggctgctttgaagaaatcaagttcagtactccttccctgGCAACAGGAAAGGATAAATTCACAGAGGGAAGAGATAGAAAGACAACGGAAAATGTTAGCAAAGCGGAAACCTCCTGCCATGGGTCAGGCCCCTCCTGCAACCAATGAGCAGAAACAGCGGAAAAGCAAGACCAATGGAGCTGAAAATGAAACGCCCTCTTCTGGGAATACAGAGCTAAAGGATACAGCCCCAGCCTTAGGAGCCCACAGTTTACTTAGGTTAACGTTAGCAGAATACCATGAACAAGAAGAAATCTTCAAACTCAGATTAGGTCATCTTAAAAAGGAGGAAGCAGAGATCCAGGCAGAGCTGGAGAGACTAGAAAGGGTTAGAAATCTACATATCAGGGAACTAAAAAGGATACATAATGAAGATAATTCACAATTTAAAGATCATCCAACGCTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAGGCATTTGATCTAACAGAGCAAAGATACGTAGCTGTGAAAATTCACCAGTTAAATAAAAACTGGAGAGATGAGAAAAAGGAGAATTACCACAAGCATGCATGTAGGGAATACCGGATTCATAAAGAGCTGGATCATCCCAGAATAGTTAAGCTGTATGATTACTTTTCACTGGATACTGACTCGTTTTGTACAGTATTAGAATACTGTGAGGGAAATGATCTGGACTTCTACCTGAAACAGCACAAATTAATGTCGGAGAAAGAGGCCCGGTCCATTATCATGCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAGGTAATATTCTTTTAGTAAATGGTACAGCGTGTGGAGAGATAAAAATTACAGATTTTGGTCTTTCGAAGATCATGGATGATGATAGCTACAATTCAGTGGATGGCATGGAGCTAACATCACAAGGTGCTGGTACTTATTGGTATTTACCACCAGAGTGTTTTGTGGTTGGGAAAGAACCACCAAAGATCTCAAATAAAGTTGATGTGTGGTCGGTGGGTGTGATCTTCTATCAGTGTCTTTATGGAAGGAAGCCTTTTGGCCATAACCAGTCTCAGCAAGACATCCTACAAGAGAATACGATTCTTAAAGCTACTGAAGTGCAGTTCCCGCCAAAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATTCGACGATGCTTGGCCTACCGAAAGGAGGACCGCATTGATGTCCAGCAGCTGGCCTGTGATCCCTACTTGTTGCCTCACATCCGAAAGTCAGTCTCTACAAGTAGCCCTGCTGGAGCTGCTATTGCATCAACCTCTGGGGCGTCCAATAACAGTTCTTCTAATTGA MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPSNILDYFRKTSPTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLSHQLNNIKTENEAPIEISSDDSKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPNTMTSLQNSKKVNPKQGTTKNDFKKLRKRKCRDVVDLSESLPLAEELNLLKKDGKDTKQMENTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVEEIPDSTMSICVPSETVDEIVKSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFEMENSLSDPENEQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVKKSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKKKNKKTLDTGAIPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLVYEDIANDDLLKVSSLCNNNKLSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRISSTPTTETIRGIDSDDVQDNSQLKASTQKAANLSEKHSLYTAELITVPFDSESPIRMKFTRISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKVTEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKLQCLNDVLGKKLNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMSGLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELNTKVIDLSKCGIALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSLKKYFPLLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNLEKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGKSPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENNKGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNAIKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSLATGKDKFTEGRDRKTTENVSKAETSCHGSGPSCNQ*AETAEKQDQWS*K*NALFWEYRAKGYSPSLRSPQFT*VNVSRIP*TRRNLQTQIRSS*KGGSRDPGRAGETRKG*KSTYQGTKKDT**R*FTI*RSSNAK*QIFVVTSFG*RRFQ*SLQGI*SNRAKIRSCENSPVK*KLER*EKGELPQACM*GIPDS*RAGSSQNS*AV*LLFTGY*LVLYSIRIL*GK*SGLLPETAQINVGERGPVHYHADCECFKVLK*NKTSHHTL*PQTR*YSFSKWYSVWRDKNYRFWSFEDHG***LQFSGWHGANITRCWYLLVFTTRVFCGWERTTKDLK*S*CVVGGCDLLSVSLWKEAFWP*PVSARHPTREYDS*SY*SAVPAKASSNT*SKGVYSTMLGLPKGGPH*CPAAGL*SLLVASHPKVSLYK*PCWSCYCINLWGVQ*QFF*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase tousled-like 2 Other TLK Q86UE8 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30880 TBC1D31::ZNF704 ENSG00000156787.17::ENSG00000164684.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1290 FALSE NA FALSE NA TBC1D31 ENSG00000156787.17 protein_coding + + chr8:123041968-123152153:+ chr8:123084340:+ chr8:124054208-124164393:+ chr8:124096580:+ ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821615:- chr8:81540686-81787016:- chr8:81733850:- chr8:123089742,chr8:123089736 chr8:80841639,chr8:80841645 NA NA chr8:124101982,chr8:124101976 chr8:81753874,chr8:81753880 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nbas_N|47-79|0.46^WD40|48-70|0.0084^Neisseria_PilC|49-78|6.3e-06^NBCH_WD40|54-72|0.039^NBCH_WD40|94-164|0.0011^Nbas_N|117-170|0.11^WD40|122-153|6.1e-07^WD40|173-195|0.052^NBCH_WD40|220-244|0.073^WD40|221-241|0.007^NBCH_WD40|285-337|0.052^Nbas_N|289-341|0.00064^WD40|307-333|0.0033^RabGAP-TBC|359-425|0.071^RabGAP-TBC-PARTIAL|451-519~|1.1e-11^DUF2933|485-509|1.5e-05 Zap1_zf1|575-579|0.55 ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:42.17Mb] 19 15 19 14.78 ONLY_REF_SPLICE YES_LDAS 0.3527 GT 1.7819 AG 1.7465 ENST00000327098.9 1-519 ENST00000519936.2 502-1761 chr8|+|[0]123072770-123072846[1]|[2]123077111-123077257[1]|[2]123082702-123082817[0]|[1]123084162-123084340[2]<==>chr8|-|[2]80641366-80641477[2]|[1]80643035-80643129[0]|[2]80659585-80659689[0]|[2]80664815-80665082[2]|[1]80670503-80670603[0]|[2]80687226-80687458[1]|[0]80693004-80693107[2]|[1]80821374-80821615[0] atgcagagcactgacctaggcaacaaggagagcggcaagatatggcaccgcaagccgtccccggccacgcgggacggaattatagtgaacattattcacaacacttccgattaccatccaaaagttttgcgatttttgaatgtggcttttgatggcacaggcgactgcttaattgctggggaccaccaaggaaatatttatgtttttgacttacatggaaacaggttcaatcttgttcagcgaacagcacaagcttgcacagctctggcctttaatcttcgtaggaaatctgaattccttgtggcattagctgattattctattaaatgttttgatacagtcaccaaggagctagttagctggatgagaggacatgaatcatcagtattttcgatctctgtgcatgcatcagggaaatatgccatcacaacttcttctgatacagcacaattatgggacttggatacctttcagagaaaaagaaagctgaatattcgccagtctgtgggtatacagaagGTGGGGAGCATTAAGCGGGAAATGACCTTCACATTTCAGTCAGAGGACTTAAAACGTGACTGTGGTAAAAAAATGTCTCATCAACACGTGTTTTCCTTGGCCATGGAGGAAGATGTGAAAACAGCAGACACCAAAAAAGCCAGCCGGATCCTTGACCATGAAAAAGAAAACACTCGCTCCATCTGTCTCCTTGAGCAAAAAAGAAAAGTTGTTTCCTCCAACATTGATGTTCCTCCAGCAAGGAAATCTTCAGAGGAACTAGACATGGACAAGGTGACAGCAGCAATGGTACTAACCAGCTTGTCGACTAGCCCTTTGGTTCGAAGTCCTCCCGTGCGGCCGAACGAGAGCCTCAGCGGATCCTGGAAGGAGGGCGGCTGCGTGCCTTCCAGCACCAGCAGCAGCGGCTACTGGAGCTGGAGCGCCCCCAGCGACCAGTCCAACCCGTCCACGCCGTCGCCGCCGCTCTCGGCTGACAGCTTCAAGCCCTTCCGCAGCCCCGCGCAGCCAGACGACGGCATCGACGAGGCGGAGGCCAGCAACCTGCTCTTCGACGAGCCCATTCCCAGGAAAAGAAAGAATTCCATGAAGGTGATGTTCAAATGCCTCTGGAAAAACTGTGGGAAGGTGCTGAGCACTGCAGCAGGTATCCAGAAACACATCCGAACCATCCATCTGGGGCGCGTTGGAGACTCTGACTACAGTGATGGAGAAGAGGACTTTTACTACACTGAGATCAAGCTCAACACAGACTCAGTGGCAGACGGGCTGAGCAGCCTGGCCCCGGTCTCACCTTCCCAGTCCCTGGCTTCACCTCCTACTTTCCCCATCCCAGATTCAAGCCGAACAGAAACTCCTTGTGCCAAAACGGAGACTAAGTTGATGACGCCGTTGAGCCGCTCAGCTCCCACCACCCTCTACCTCGTGCACACTGACCATGCTTACCAGGCCACACCCCCTGTGACCATTCCAGGATCGGCCAAGTTCACCCCCAATGGCAGCAGCTTCAGCATTTCCTGGCAATCTCCTCCGGTCACTTTCACAGGCATCCCAGTGTCACCCACACATCATCCGGTGGGCACAGGAGAGCAGAGACAGCATGCGCACACGGTCCTGTCCTCCCCACCCAGAGGCACAGTCAGCTTAAGGAAGCCCAGGGGAGAGGGCAAAAAGTGTCGGAAGGTGTACGGGATGGAGAACCGAGACATGTGGTGTACCGCCTGCCGCTGGAAGAAGGCCTGCCAGAGGTTCCTCGACTGA MQSTDLGNKESGKIWHRKPSPATRDGIIVNIIHNTSDYHPKVLRFLNVAFDGTGDCLIAGDHQGNIYVFDLHGNRFNLVQRTAQACTALAFNLRRKSEFLVALADYSIKCFDTVTKELVSWMRGHESSVFSISVHASGKYAITTSSDTAQLWDLDTFQRKRKLNIRQSVGIQKVGSIKREMTFTFQSEDLKRDCGKKMSHQHVFSLAMEEDVKTADTKKASRILDHEKENTRSICLLEQKRKVVSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPPVRPNESLSGSWKEGGCVPSSTSSSGYWSWSAPSDQSNPSTPSPPLSADSFKPFRSPAQPDDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRVGDSDYSDGEEDFYYTEIKLNTDSVADGLSSLAPVSPSQSLASPPTFPIPDSSRTETPCAKTETKLMTPLSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNGSSFSISWQSPPVTFTGIPVSPTHHPVGTGEQRQHAHTVLSSPPRGTVSLRKPRGEGKKCRKVYGMENRDMWCTACRWKKACQRFLD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30881 DHX35::ITCH ENSG00000101452.15::ENSG00000078747.17 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DHX35 ENSG00000101452.15 protein_coding + + chr20:38962299-39039723:+ chr20:38969214:+ chr20:37590942-37668366:+ chr20:37597857:+ ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34369394:+ chr20:32951041-33099578:+ chr20:32957200:+ chr20:38969340,chr20:38969340 chr20:34366660,chr20:34366657 NA NA chr20:37597983,chr20:37597983 chr20:32954466,chr20:32954463 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:4.45Mb] 18 12 18 12 ONLY_REF_SPLICE YES_LDAS 0.3132 GT 1.9899 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-644a chr20:34466325-34466418:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30882 RARA::PKIA ENSG00000131759.18::ENSG00000171033.13 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1293 FALSE NA FALSE NA RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ PKIA ENSG00000171033.13 protein_coding + + chr8:78516340-78605267:+ chr8:78572811:+ chr8:79428575-79517502:+ chr8:79485046:+ chr17:40318133,chr17:40318136,chr17:40318133,chr17:40318135 chr8:78563195,chr8:78563190,chr8:78563190,chr8:78563192 NA NA chr17:38474385,chr17:38474388,chr17:38474385,chr17:38474387 chr8:79475430,chr8:79475425,chr8:79475425,chr8:79475427 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RARA:Oncogene","RARA:ArcherDX_panel","RARA:FoundationOne_panel"];["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr8] 17 2 17 1.7 ONLY_REF_SPLICE YES_LDAS 0.1953 GT 1.7819 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30883 SLC45A4::LINC00824 ENSG00000022567.10::ENSG00000254275.6 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC45A4 ENSG00000022567.10 protein_coding - - chr8:141207166-141308305:- chr8:141253989:- chr8:142217265-142318404:- chr8:142264088:- LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:141246208,chr8:141246210 chr8:128438542,chr8:128438541 NA NA chr8:142256307,chr8:142256309 chr8:129450788,chr8:129450787 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:12.64Mb] 15 1 15 1 ONLY_REF_SPLICE YES_LDAS 0.167 GT 1.8892 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30884 CSE1L::ENSG00000290421 ENSG00000124207.17::ENSG00000290421.1 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000290421 ENSG00000290421.1 lncRNA + + chr20:49318475-49441654:+ chr20:49370502:+ chr20:47935012-48058191:+ chr20:47987039:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CSE1L:Oncogene"] 14 6 14 6 ONLY_REF_SPLICE YES_LDAS 0.2088 GT 1.5058 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30885 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1284 TRUE 2271 TRUE 872 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140948666:- chr8:141667999-142012315:- chr8:141958765:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140311374:- chr8:140739968-141468678:- chr8:141321473:- chr8:140933314,chr8:140933304,chr8:140933302,chr8:140933270,chr8:140933254 chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715,chr8:140343715 NA NA chr8:141943413,chr8:141943403,chr8:141943401,chr8:141943369,chr8:141943353 chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814,chr8:141353814 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr8:0.20Mb] 13 34 13 12.57 ONLY_REF_SPLICE YES_LDAS 0.2669 GT 1.8892 AG 1.3996 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|TRUE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|TRUE|TRUE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30886 PBRM1::WDR82 ENSG00000163939.19::ENSG00000164091.12 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1294 FALSE NA FALSE NA PBRM1 ENSG00000163939.19 protein_coding - - chr3:52545352-52685917:- chr3:52668498:- chr3:52579368-52719933:- chr3:52702514:- WDR82 ENSG00000164091.12 protein_coding - - chr3:52254434-52288020:- chr3:52270809:- chr3:52288450-52322036:- chr3:52304825:- chr3:52663419,chr3:52663425 chr3:52271717,chr3:52271720 NA NA chr3:52697435,chr3:52697441 chr3:52305733,chr3:52305736 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Bromodomain|64-138|2.1e-25^Bromodomain|198-274|6.8e-26 WD40-PARTIAL|~162-175|0.065^ANAPC4_WD40-PARTIAL|~162-177|0.27^eIF2A-PARTIAL|~162-197|0.046^eIF2A|165-267|0.00077^SMN_Tudor|166-179|1.4^RMC1_N|186-259|0.00066^ANAPC4_WD40|192-233|3.9e-06^WD40|198-220|0.014^PROPPIN|202-269|0.0023^SMN_Tudor|217-245|0.00037^WD40|229-267|1.4e-07^NBCH_WD40|239-267|0.052^ANAPC4_WD40|244-291|2.9e-05^SMN_Tudor|256-264|2.3^MinC_C|260-302|0.00014^WD40|280-301|0.00018 ["PBRM1:Oncogene","PBRM1:FoundationOne_panel","PBRM1:ArcherDX_panel"];["WDR82:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr3:0.26Mb] 12 3 12 3 ONLY_REF_SPLICE YES_LDAS 0.1566 GT 1.8323 AG 1.6895 ENST00000707071.1 1-384 ENST00000296490.8 162-942 chr3|-|[2]52668498-52668645[2]|[1]52678500-52678597[0]|[2]52679574-52679711[0]<==>chr3|-|[2]52257490-52257519[0]|[2]52258536-52258678[1]|[0]52259197-52259266[0]|[2]52259717-52259872[0]|[2]52260385-52260501[0]|[2]52261380-52261479[2]|[1]52266952-52267018[1]|[0]52270712-52270809[2] atgggttccaagagaagaagagctacctccccttccagcagtgtcagcggggactttgatgatgggcaccattctgtgtcaacaccaggcccaagcaggaaaaggaggagactttccaatcttccaactgtagatcctattgccgtgtgccatgaactctataataccatccgagactataaggatgaacagggcagacttctctgtgagctcttcattagggcaccaaagcgaagaaatcaaccagactattatgaagtggtttctcagcccattgacttgatgaaaatccaacagaaactaaaaatggaagagtatgatgatgttaatttgctgactgctgacttccagcttctttttaacaatgcaaagtcctattataagACCAAAGAGAACCCTGTACAGTAAGAAATATGGTGTGGACCTCATCAGATACACTCATGCAGCAAACACAGTTGTTTACAGCTCTAACAAAATAGACGATACTATTCGTTACTTGTCCTTGCATGACAACAAATACATCAGATACTTTCCTGGACATAGCAAAAGGGTGGTGGCCTTGTCCATGTCACCTGTGGATGACACTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGTCTCCTAACTGCCAGGGCCTCATGCATCTGCAGGGGAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTTCGCTGCAGGTGTCAACTCTGAAATGGTCAAGCTTTATGACCTTCGTTCTTTTGATAAGGGGCCATTTGCTACCTTTAAGATGCAGTATGATCGAACTTGTGAGTGGACAGGACTTAAATTCAGCAATGATGGCAAGCTCATCCTCATTTCCACCAACGGCAGCTTCATTCGTCTGATTGATGCATTCAAAGGAGTGGTGATGCACACATTTGGGGGTTATGCCAACAGCAAAGCTGTCACACTGGAGGCTTCATTTACTCCAGACTCTCAGTTTATTATGATTGGTTCAGAGGATGGCAAGATCCATGTCTGGAATGGAGAGAGCGGTATAAAAGTAGCTGTGTTGGATGGTAAACACACAGGCCCGATTACCTGTTTGCAATTCAACCCCAAGTTCATGACTTTTGCCAGTGCGTGTTCCAACATGGCCTTTTGGTTGCCCACCATTGATGACTGA MGSKRRRATSPSSSVSGDFDDGHHSVSTPGPSRKRRRLSNLPTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKTKENPVQ*EIWCGPHQIHSCSKHSCLQL*QNRRYYSLLVLA*QQIHQILSWT*QKGGGLVHVTCG*HFHFWVS**DHSTLGSPVS*LPGPHASAGEASLFF*SRRVNFRCRCQL*NGQAL*PSFF**GAICYL*DAV*SNL*VDRT*IQQ*WQAHPHFHQRQLHSSD*CIQRSGDAHIWGLCQQQSCHTGGFIYSRLSVYYDWFRGWQDPCLEWRERYKSSCVGW*THRPDYLFAIQPQVHDFCQCVFQHGLLVAHH**L FALSE FALSE NA NA TRUE hsa-let-7g chr3:52268278-52268361:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE polybromo 1 1 Yes clear cell renal carcinoma, breast epithelial TSG missense, nonsense, frameshift, splice_site, large_deletion, other FALSE NA NA NA NA NA NA NA NA NA 30887 VSTM2L::CTNNBL1 ENSG00000132821.12::ENSG00000132792.20 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1295 FALSE NA FALSE NA VSTM2L ENSG00000132821.12 protein_coding + + chr20:37903111-37945350:+ chr20:37933589:+ chr20:36531513-36573752:+ chr20:36561991:+ CTNNBL1 ENSG00000132792.20 protein_coding + + chr20:37693955-37872129:+ chr20:37859899:+ chr20:36322357-36500531:+ chr20:36488301:+ chr20:37937226,chr20:37937223 chr20:37847329,chr20:37847323 NA NA chr20:36565628,chr20:36565625 chr20:36475731,chr20:36475725 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Fimbrial_CS1|36-61|0.76^I-set|43-144|4e-08^Ig_3|44-144|3.3e-09^V-set|45-151|4.9e-13^ig|47-145|9.1e-08^Ig_2|50-146|9e-06^Herpes_gE_N|104-153|5.6e-05^Fimbrial_CS1|111-162|0.00021^Cu2_monooxygen|130-172|8.8e-05 none ["Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.03Mb];LOCAL_REARRANGEMENT:+:[30975] 12 5 12 3.33 ONLY_REF_SPLICE YES_LDAS 0.1601 GT 1.7232 AG 1.8892 ENST00000373461.9 1-342 ENST00000628103.2 1312-1611 chr20|+|[0]37903351-37903471[0]|[1]37931635-37931804[2]|[0]37933539-37933589[2]<==>chr20|+|[0]37859899-37860036[2]|[0]37860272-37860344[0]|[1]37871925-37872013[2] atgggggccccgctcgccgtagcgctgggcgccctccactacctggcacttttcctgcaactcggcggcgccacgcggcccgccggccacgcgccctgggacaaccacgtctccggccacgccctgttcacagagacaccccatgacatgacagcacggacgggcgaggacgtggagatggcctgctccttccgcggcagcggctccccctcctactcgctggagatccagtggtggtatgtacggagccaccgggactggaccgacaagcaggcgtgggcctcgaaccagctaaaagcatctcagcaggaagacgcagggaaggaggcaaccaaaataagtGACATGGTCCGGCGAGGAGAGATCATCGACAATGACACCGAGGAGGAGTTCTACCTCCGGCGCCTGGATGCGGGGCTCTTTGTTCTCCAGCACATCTGCTACATCATGGCCGAGATCTGCAATGCCAATGTCCCCCAGATTCGCCAGAGGGTTCACCAGATCCTAAACATGCGAGGAAGCTCCATCAAAATTGTCAGGCATATCATCAAGGAGTATGCAGAGAACATCGGGGACGGCCGGAGCCCGGAGTTCCGGGAGAACGAGCAAAAGCGCATCCTGGGCTTGCTGGAGAACTTCTAG MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISDMVRRGEIIDNDTEEEFYLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGDGRSPEFRENEQKRILGLLENF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Pheochromocytoma and Paraganglioma ADRENAL_GLAND no_match 36561991 TRUE 36468504 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30893 CSE1L::ENSG00000283529 ENSG00000124207.17::ENSG00000283529.2 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2268 TRUE 870 CSE1L ENSG00000124207.17 protein_coding + + chr20:49046246-49096960:+ chr20:49072453:+ chr20:47662783-47713497:+ chr20:47688990:+ ENSG00000283529 ENSG00000283529.2 transcribed_unprocessed_pseudogene + + chr20:49318337-49340437:+ chr20:49335520:+ chr20:47934874-47956974:+ chr20:47952057:+ chr20:49072692,chr20:49072697,chr20:49072705,chr20:49072723,chr20:49072726,chr20:49072704,chr20:49072695,chr20:49072701,chr20:49072736,chr20:49072722 chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153,chr20:49332153 NA NA chr20:47689229,chr20:47689234,chr20:47689242,chr20:47689260,chr20:47689263,chr20:47689241,chr20:47689232,chr20:47689238,chr20:47689273,chr20:47689259 chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690,chr20:47948690 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CSE1L:Oncogene"] 9 36 9 5.61 ONLY_REF_SPLICE YES_LDAS 0.1526 GT 1.5058 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30895 TRIO::FBXL7 ENSG00000038382.23::ENSG00000183580.10 AU565 SRR8615774 SRR8639167 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1292 FALSE NA FALSE NA TRIO ENSG00000038382.23 protein_coding + + chr5:14143342-14532128:+ chr5:14420021:+ chr5:14143451-14532237:+ chr5:14420130:+ FBXL7 ENSG00000183580.10 protein_coding + + chr5:15500180-15939795:+ chr5:15615983:+ chr5:15500289-15939904:+ chr5:15616092:+ chr5:14441371,chr5:14441367 chr5:15603665,chr5:15603661 NA NA chr5:14441480,chr5:14441476 chr5:15603774,chr5:15603770 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CRAL_TRIO|75-203|1.3e-09^CRAL_TRIO_2|84-211|2.6e-11^RhoGEF|186-246|0.74^Spectrin|221-337|0.00023^CRAL_TRIO_2|227-251|0.24^HsbA|284-326|1.3^Spectrin|341-444|3.8e-13^RhoGEF|397-466|0.98^Med26|414-432|0.0034^Spectrin|457-494|2.8^PH|541-574|1.2^RhoGEF|569-569|2.3^Spectrin|570-670|2.6e-12^Med26|592-609|1.8^Myb_DNA-bind_4|605-619|8.3^HsbA|619-671|0.5^Spectrin|675-783|4.5e-07^RhoGEF|683-737|2.1^HsbA|705-785|3.4^CRAL_TRIO|762-813|8.1^Spectrin|800-892|4.8^Spectrin|909-1006|8.9e-13^HsbA|911-957|0.48^Wx5_PLAF3D7|940-1006|0.0014^Myb_DNA-bind_4|971-1040|0.0005^SH3_9|1036-1044|8.9^Spectrin|1140-1243|2.7e-13^Wx5_PLAF3D7|1180-1237|1.9^Myb_DNA-bind_4|1184-1199|5.4^HsbA|1214-1259|0.16^RhoGEF|1296-1464|3e-39^IQ_SEC7_PH|1297-1315|3.7^PH_10|1482-1530|1.9e-05^IQ_SEC7_PH|1492-1593|6.2e-07^PH|1503-1590|5e-12^PH_13|1528-1590|2.7e-05^SH3_1|1662-1713|1.1e-10^SH3_2|1662-1712|8.3e-09^SH3_9|1663-1701|4.9e-07^SH3-RhoG_link|1715-1894|6e-115^Spectrin|1773-1809|7.7^Med26|1793-1810|0.48 F-box-like|114-159|6.9e-21^F-box|114-155|2.3e-15^LRR_6|185-208|0.0052^LRR_4|188-226|0.0051^LRR_1|188-198|2.2^F-box-like|198-216|2.3^F-box|204-217|1.6^LRR_4|212-255|1.8e-06^LRR_6|214-228|0.22^LRR_1|214-224|0.56^F-box|225-250|1^LRR_6|237-248|0.002^LRR_1|239-250|0.0078^LRR_4|264-283|0.97^LRR_6|273-293|0.0049^LRR_1|273-284|0.47^LRR_6|296-319|6.2e-05^LRR_4|298-342|0.00013^LRR_1|299-309|0.35^LRR_6|323-346|0.0036^LRR_1|325-344|0.031^LRR_4|351-390|3.3e-05^LRR_1|351-362|0.28^LRR_6|352-370|0.0023^PTE|367-407|9.5e-05^LRR_6|374-398|0.00065^LRR_1|377-387|0.61^LRR_4|397-418|0.0013^LRR_6|400-424|1.6e-06^LRR_1|403-419|0.034^LRR_6|427-447|0.00055^LRR_4|429-464|0.021^LRR_1|429-440|0.4^LRR_6|453-469|0.011^LRR_1|456-467|0.27 ["TRIO:Oncogene"];["FBXL7:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.97Mb] 8 8 8 8 ONLY_REF_SPLICE YES_LDAS 0.167 GT 1.7819 AG 1.8256 ENST00000698541.1 1-5203 ENST00000504595.2 38-1476 chr5|+|[0]14143726-14143882[0]|[1]14270825-14270899[0]|[1]14280322-14280436[1]|[2]14286871-14287063[2]|[0]14290716-14291228[2]|[0]14293012-14293134[2]|[0]14297072-14297263[2]|[0]14304461-14304592[2]|[0]14316513-14316743[2]|[0]14330778-14330900[2]|[0]14336536-14336727[2]|[0]14358178-14358347[1]|[2]14359357-14359531[2]|[0]14363732-14363927[0]|[1]14364650-14364816[2]|[0]14366860-14366979[2]|[0]14368708-14368899[2]|[0]14369374-14369523[2]|[0]14374229-14374343[0]|[1]14378012-14378127[2]|[0]14381130-14381252[2]|[0]14387438-14387632[2]|[0]14387732-14387847[1]|[2]14388613-14388679[2]|[0]14389289-14389398[1]|[2]14390231-14390300[2]|[0]14390901-14390990[2]|[0]14394038-14394130[2]|[0]14397043-14397154[0]|[1]14398880-14399070[2]|[0]14400963-14401064[2]|[0]14405848-14405990[1]|[2]14406573-14406672[2]|[0]14419778-14420021[0]<==>chr5|+|[1]15615983-15616072[0]|[1]15927890-15928501[0]|[1]15936450-15937186[2] atgagcggcagcagcggcggagccgccgcccccgccgcgtcctccggccccgccgcggcggccagcgcggctggctcgggctgcgggggcggtgccggcgagggggcagaggaggcggccaaggacctggccgacatcgcggccttcttccgatccgggtttcgaaaaaacgatgaaatgaaagctatggatgttttaccaattttgaaggaaaaagttgcatacctttcaggtgggagagataaacgtggaggtcccattttaacgtttccggcccgcagcaatcatgacagaatacgacaggaggatctcaggagactcatttcctatctagcctgtattcccagcgaggaggtctgcaagcgtggcttcacggtgatcgtggacatgcgtgggtccaagtgggactccatcaagccccttctgaagatcctgcaggagtccttcccctgctgcatccatgtggccctgatcatcaagccagacaacttctggcagaaacagaggactaattttggcagttctaaatttgaatttgagacaaatatggtctctttagaaggccttaccaaagtagttgatccttctcagctaactcctgagtttgatggctgcctggaatacaaccacgaagaatggattgaaatcagagttgcttttgaagactacattagcaatgccacccacatgctgtctcggctggaggaacttcaggacatcctagctaagaaggagctgcctcaggatttagagggggctcggaatatgatcgaggaacattctcagctgaagaagaaggtgattaaggcccccatcgaggacctggatttggagggacagaagctgcttcagaggatacagagcagtgaaagctttcccaaaaagaactcaggctcaggcaatgcggacctgcagaacctcttgcccaaggtgtccaccatgctggaccggctgcactcgacacggcagcatctgcaccagatgtggcatgtgaggaagctgaagctggaccagtgcttccagctgaggctgtttgaacaggatgctgagaagatgtttgactggatcacacacaacaaaggcctgtttctaaacagctacacagagattgggaccagccaccctcatgccatggagcttcagacgcagcacaatcactttgccatgaactgtatgaacgtgtatgtaaatataaaccgcatcatgtcggtggccaatcgtctggtggagtctggccactatgcctcgcagcagatcaggcagatcgcgagtcagctggagcaggagtggaaggcgtttgcggcagccctggatgagcggagcaccttgctggacatgtcctccattttccaccagaaggccgaaaagtatatgagcaacgtggattcatggtgtaaagcttgcggtgaggtagaccttccctcagagctgcaggacctagaagatgccattcatcaccaccagggaatatatgaacatatcactcttgcttattctgaggtcagccaagatgggaagtcgctccttgacaagctccagcggcccttgactcccggcagctccgattccctgacagcctctgccaactactccaaggccgtgcaccatgtcctggatgtcatccacgaggtgctgcaccaccagcggcagctggagaacatctggcaacaccgcaaggtccggctgcatcagaggctgcagctgtgtgttttccagcaggacgttcagcaggtgctagactggatcgagaaccacggagaagcatttctgagcaaacatacaggtgtggggaaatctcttcatcgggccagagcattgcagaaacgtcatgaagattttgaagaagtggcacagaacacatacaccaatgcggataaattactggaagcagcagaacagctggctcagactggggaatgtgaccccgaagagatttatcaggctgcccatcagctggaagaccggattcaagatttcgttcggcgtgttgagcagcgaaagatcctactggacatgtcagtgtcctttcacacccatgtgaaagagctgtggacgtggctggaggagctgcagaaggagctgctggacgacgtgtatgccgagtcggtggaggccgtgcaggacctcatcaagcgctttggccagcagcagcagaccaccctgcaggtgactgtcaacgtgatcaaggaaggggaggacctcatccagcagctcagggactctgccatctccagtaacaagaccccccacaacagctccatcaaccacattgagacggtgctgcagcagctggacgaggcgcagtcgcagatggaggagctcttccaggagcgcaagatcaagctggagctcttcctgcagctgcgcatcttcgagagggacgccatcgacattatctcagacctcgagtcttggaatgatgagctttctcagcaaatgaatgacttcgacacagaagatctcacgattgcagagcagcgcctccagcaccatgcagacaaagccttgaccatgaacaacttgacttttgacgtcatccaccaagggcaagatcttctgcagtatgtcaatgaggtccaggcctctggtgtggagctgctgtgtgatagagatgtagacatggcaactcgggtccaggacctgctggagtttcttcatgaaaaacagcaggaattggatttagccgcagagcagcatcggaaacacctggagcagtgcgtgcagctgcgccacctgcaggcagaagtgaaacaggtgctgggttggatccgcaacggagagtccatgttaaatgccggacttatcacagccagctcgttacaagaggcagagcagctccagcgagagcacgagcagttccagcatgccattgagaaaacacatcagagcgcgctgcaggtgcagcagaaggcagaagccatgctacaggccaaccactacgacatggacatgatccgggactgcgccgagaaggtggcgtctcactggcaacagctcatgctcaagatggaagatcgcctcaagctcgtcaacgcctctgtcgctttctacaaaacctcagagcaggtctgcagcgtcctcgagagcctggaacaggagtacaagagagaagaagactggtgtggcggggcggataagctgggcccaaactctgagacggaccacgtgacgcccatgatcagcaagcacctggagcagaaggaggcattcctgaaggcttgcacccttgctcggaggaatgcagacgtcttcctgaaatacctgcacaggaacagcgtgaacatgccaggaatggtgacgcacatcaaagctcctgaacagcaagtgaaaaatatcttgaatgaactcttccaacgggagaacagggtattgcattactggaccatgaggaagagacggctggaccagtgtcagcagtacgtggtctttgagaggagtgccaagcaggctttggaatggatccatgacaatggcgagttctacctttccacacacacctccacgggctccagtatacagcacacccaggagctcctgaaagagcacgaggagttccagataactgcaaagcaaaccaaagagagagtgaagctattgatacagctggctgatggcttttgtgaaaaagggcatgcccatgcggcagagataaaaaaatgtgttactgctgtggataagaggtacagagatttctctctgcggatggagaagtacaggacctctttggaaaaagccctggggatttcttcagattccaacaaatcgagtaaaagtctccagctagatatcattccagccagtatccctggctcagaggtgaaacttcgagatgctgctcatgaacttaatgaagagaagcggaaatctgcccgcaggaaagagttcataatggctgagctcattcaaactgaaaaggcttatgtaagagacctccgggaatgtatggatacgtacctgtgggaaatgaccagtggcgtggaagagattccacctggcattgtaaacaaagaactcatcatcttcggaaacatgcaagaaatctacgaatttcataataacatattcctaaaggagctggaaaaatatgaacagttgccagaggatgttggacattgttttgttacttgggcagacaagtttcagatgtatgtcacatattgcaaaaataagcctgattctactcagctgatattggaacatgcagggtcctattttgacgagatacagcagcgacatggattagccaattccatttcttcctaccttattaaaccagttcagcgaataacgaagtatcagctccttttaaaagagctgctgacgtgctgtgaggaaggaaagggagagattaaagatggcctggaggtgatgctcagcgtgccgaagcgagccaatgatgccatgcacctcagcatgctggaagggtttgatgaaaacattgagtctcagggagaactcatcctacaggaatccttccaagtgtgggacccaaaaaccttaattcgaaagggtcgagaacggcatctcttcctttttgaaatgtccttagtatttagtaaagaagtgaaagattccagtgggagaagcaagtacctttataaaagcaaattgtttacctcagagttgggtgtcacagaacatgttgaaggagacccttgcaaatttgcactgtgggtggggagaacaccaacttcagataataaaattgtccttaaggcttccagcatagagaacaagcaggactggataaagcatatccgcgaagtcatccaggagcggacgatccacctgaagggagccctgaaggagcccattcacatccctaagaccgctcccgccacaagacagaagggaaggagggatggagaggatctggacagccaaggagacggcagcagccagcctgatacgatttccatcgcctcacggacgtctcagaacacgctggacagcgataagctctctggtggctgtgagctgacagtggtgatccatgacttcaccgcttgcaacagcaacgagctgaccatccgacggggccagaccgtggaagttctggagcggccgcatgacaagcctgactggtgtctggtgcggacaactgaccgctccccagcggcagaaggcctggtcccctgtggttcactgtgcatcgcccactccagaagtagcatggaaatggagggcatcttcaaccacaaagGCAAAGGCAGCTCGAGCATCTCATCTGACGTGAGTTCAAGTACAGATCACACGCCCACTAAAGCCCAGAAGAATGTGGCTACCAGCGAAGACTCCGACCTGAGCATGCGCACACTGAGCACGCCCAGCCCAGCCCTGATATGTCCACCGAATCTCCCAGGATTTCAGAATGGAAGGGGCTCGTCCACCTCCTCGTCCTCCATCACCGGGGAGACGGTGGCCATGGTGCACTCCCCGCCCCCGACCCGCCTCACACACCCGCTCATCCGGCTCGCCTCCAGACCCCAGAAGGAGCAGGCCAGCATAGACCGGCTCCCGGACCACTCCATGGTGCAGATCTTCTCCTTCCTGCCCACCAACCAGCTGTGCCGCTGCGCGCGAGTGTGCCGCCGCTGGTACAACCTGGCCTGGGACCCGCGGCTCTGGAGGACTATCCGCCTGACGGGCGAGACCATCAACGTGGACCGCGCCCTCAAGGTGCTGACCCGCAGACTCTGCCAGGACACCCCCAACGTGTGTCTCATGCTGGAAACCGTAACTGTCAGTGGCTGCAGGCGGCTCACAGACCGAGGGCTGTACACCATCGCCCAGTGCTGCCCCGAACTGAGGCGACTGGAAGTCTCAGGCTGTTACAATATCTCCAACGAGGCCGTCTTTGATGTGGTGTCCCTCTGCCCTAATCTGGAGCACCTGGATGTGTCAGGATGCTCCAAAGTGACCTGCATCAGCTTGACCCGGGAGGCCTCCATTAAACTGTCACCCTTGCATGGCAAACAGATTTCCATCCGCTACCTGGACATGACGGACTGCTTCGTGCTGGAGGACGAAGGCCTGCACACCATCGCGGCGCACTGCACGCAGCTCACCCACCTCTACCTGCGCCGCTGCGTCCGCCTGACCGACGAAGGCCTGCGCTACCTGGTGATCTACTGCGCCTCCATCAAGGAGCTGAGCGTCAGCGACTGCCGCTTCGTCAGCGACTTCGGCCTGCGGGAGATCGCCAAGCTGGAGTCCCGCCTGCGGTACCTGAGCATCGCGCACTGCGGCCGGGTCACCGACGTGGGCATCCGCTACGTGGCCAAGTACTGCAGCAAGCTGCGCTACCTCAACGCGAGGGGCTGCGAGGGCATCACGGACCACGGTGTGGAGTACCTCGCCAAGAACTGCACCAAACTCAAATCCCTGGATATCGGCAAATGCCCTTTGGTATCCGACACGGGCCTGGAGTGCCTGGCCCTGAACTGCTTCAACCTCAAGCGGCTCAGCCTCAAGTCCTGCGAGAGCATCACCGGCCAGGGCTTGCAGATCGTGGCCGCCAACTGCTTTGACCTCCAGACGCTGAATGTCCAGGACTGCGAGGTCTCCGTGGAGGCCCTGCGCTTTGTCAAACGCCACTGCAAGCGCTGCGTCATCGAGCACACCAACCCGGCTTTCTTCTGA MSGSSGGAAAPAASSGPAAAASAAGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDILAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSESFPKKNSGSGNADLQNLLPKVSTMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIRQIASQLEQEWKAFAAALDERSTLLDMSSIFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSINHIETVLQQLDEAQSQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSNELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF* FALSE FALSE NA NA TRUE hsa-mir-887 chr5:15935182-15935260:+ FALSE NA NA TRUE TRUE Triple functional domain protein CAMK Trio O75962 FALSE NA NA NA NA NA NA TRUE Lung,Soft_tissue no_match TRUE Lung squamous cell carcinoma LUNG no_match 14391099 FALSE 15616092 TRUE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30900 MAFK::SLC29A4 ENSG00000198517.10::ENSG00000164638.11 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1302 FALSE NA FALSE NA MAFK ENSG00000198517.10 protein_coding + + chr7:1530702-1543043:+ chr7:1530898:+ chr7:1570338-1582679:+ chr7:1570534:+ SLC29A4 ENSG00000164638.11 protein_coding + + chr7:5274369-5306912:+ chr7:5290732:+ chr7:5314000-5346543:+ chr7:5330363:+ chr7:1536756,chr7:1536757,chr7:1536757,chr7:1536774 chr7:5290456,chr7:5290454,chr7:5290320,chr7:5290454 NA NA chr7:1576392,chr7:1576393,chr7:1576393,chr7:1576410 chr7:5330087,chr7:5330085,chr7:5329951,chr7:5330085 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MAFK:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:3.73Mb] 68 1 68 1 ONLY_REF_SPLICE YES_LDAS 0.8021 GT 1.6895 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30901 ST7::BAIAP2L1 ENSG00000004866.22::ENSG00000006453.14 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1300 FALSE NA FALSE NA ST7 ENSG00000004866.22 protein_coding + + chr7:116953238-117230176:+ chr7:117138532:+ chr7:116593292-116870230:+ chr7:116778586:+ BAIAP2L1 ENSG00000006453.14 protein_coding - - chr7:98291650-98401090:- chr7:98355128:- chr7:97920962-98030402:- chr7:97984440:- chr7:117152043 chr7:98357462 NA NA chr7:116792097 chr7:97986774 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ST7|18-576|8.5e-304^TPR_1|208-213|3.2^TPR_14|246-268|0.063^TPR_6|253-264|7^TPR_19|253-266|0.12^TPR_2|254-265|0.029^TPR_1|254-265|0.13^TPR_19|299-327|0.016^TPR_2|300-327|0.0017^TPR_14|300-327|0.00088^TPR_6|301-327|2.3e-06^TPR_1|301-317|0.045^TPR_19|309-358|0.0027^Clathrin|332-379|2.5e-05^TPR_14|337-371|0.27^TPR_1|401-415|0.074^TPR_2|402-415|0.51^TPR_14|402-422|1.1^TPR_19|444-462|4.9 IMD-PARTIAL|~128-236|3.5e-68^BAR_3-PARTIAL|~128-160|9.2e-08^Prominin-PARTIAL|~128-164|2.2e-05^LMBR1-PARTIAL|~128-178|0.00025^RNase_HII-PARTIAL|~128-179|0.0011^RNase_HII|211-246|2^SH3_2|344-397|8e-11^SH3_9|347-398|6.3e-13^SH3_1|357-394|2e-08 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:18.55Mb] 61 64 61 64 ONLY_REF_SPLICE YES_LDAS 1.4532 GT 1.4566 AG 1.9899 ENST00000323984.8 1-963 ENST00000005260.9 128-1536 chr7|+|[0]116953541-116953691[0]|[1]117099762-117099844[2]|[0]117119561-117119720[0]|[1]117129793-117129847[1]|[2]117130491-117130606[0]|[1]117131885-117131960[1]|[2]117134124-117134192[1]|[2]117136081-117136235[0]|[1]117138435-117138532[2]<==>chr7|-|[2]98293521-98293596[2]|[1]98294074-98294111[0]|[2]98304196-98304376[2]|[1]98306439-98306516[2]|[1]98307689-98307896[1]|[0]98310445-98310592[0]|[2]98312097-98312264[0]|[2]98315460-98315612[0]|[2]98317219-98317356[0]|[2]98320058-98320129[0]|[2]98320237-98320298[1]|[0]98355042-98355128[1] atggctgaagcggccacgggctttctggagcagctcaagtcctgcatagtttggtcttggacgtatctgtggaccgtgtggttcttcatcgtgctattcctggtctacatcctgcgggtgcctttgaaaatcaacgacaacttgagcacagtgagcatgtttttgaacacattaacaccgaagttctacgtggccctaacaggcacttcctcactaatatcagggcttattttgatatttgaatggtggtattttcgcaaatacggaacttcattcattgaacaagtctcagtaagccacttgcgcccccttctgggaggggttgacaacaactcttccaacaattctaattccagtaacggggactcagattccaataggcaaagtgtctcagaatgcaaagtatggcgaaatccactaaatttatttaggggtgctgaatacaatcggtatacttgggtgacaggacgagagcctcttacttactatgacatgaatctctctgcccaagaccaccagacattctttacttgtgactcggaccatctgcgtcccgcagatgcaataatgcagaaagcctggagagagagaaacccccaagctaggatttctgcagctcatgaagccttggagataaatgaaattaggtccagagttgaagttcccctaattgcttcctctaccatctgggagataaaattgttaccaaagtgtgcaactgcttatattctcttggctgaagaggaagcaacaaccattgctgaagcagaaaaattatttaagcaggccctgaaggctggagatggctgttaccgacgctctcagcagctacaacatcatggatcccagtatgaagcccaacatagacgagacaccaatgtcttggtgtacatcaaaagaaggctagcaatgtgtgccagaagactcgggaggaccagggaagcagtgaaaatgatgagagatCTATGATCCTGGCAGGAAAAGCCTACTACGATGGAGTGGCCAAGATCGGTGAGATTGCCACTGGGTCCCCCGTGTCAACTGAACTGGGACATGTCCTCATAGAGATTTCAAGTACCCACAAGAAACTCAACGAGAGTCTTGATGAAAATTTTAAAAAATTCCACAAAGAGATTATCCATGAGCTGGAGAAGAAGATAGAACTTGACGTGAAATATATGAACGCAACTCTAAAAAGATACCAAACAGAACACAAGAATAAATTAGAGTCTTTGGAGAAATCCCAAGCTGAGTTGAAGAAGATCAGAAGGAAAAGCCAAGGAAGCCGAAACGCACTCAAATATGAACACAAAGAAATTGAGTATGTGGAGACCGTTACTTCTCGTCAGAGTGAAATCCAGAAATTCATTGCAGATGGTTGCAAAGAGGCTCTGCTTGAAGAGAAGAGGCGCTTCTGCTTTCTGGTTGATAAGCACTGTGGCTTTGCAAACCACATACATTATTATCACTTACAGTCTGCAGAACTACTGAATTCCAAGCTGCCTCGGTGGCAGGAGACCTGTGTTGATGCCATCAAAGTGCCAGAGAAAATCATGAATATGATCGAAGAAATAAAGACCCCAGCCTCTACCCCCGTGTCTGGAACTCCTCAGGCTTCACCCATGATCGAGAGAAGCAATGTGGTTAGGAAAGATTACGACACCCTTTCTAAATGCTCACCAAAGATGCCCCCCGCTCCTTCAGGCAGAGCATATACCAGTCCCTTGATCGATATGTTTAATAACCCAGCCACGGCTGCCCCGAATTCACAAAGGGTAAATAATTCAACAGGTACTTCCGAAGATCCCAGTTTACAGCGATCAGTTTCGGTTGCAACGGGACTGAACATGATGAAGAAGCAGAAAGTGAAGACCATCTTCCCGCACACTGCGGGCTCCAACAAGACCTTACTCAGCTTTGCACAGGGAGATGTCATCACGCTGCTCATCCCCGAGGAGAAGGATGGCTGGCTCTATGGAGAACACGACGTGTCCAAGGCGAGGGGTTGGTTCCCGTCGTCGTACACGAAGTTGCTGGAAGAAAATGAGACAGAAGCAGTGACCGTGCCCACGCCAAGCCCCACACCAGTGAGAAGCATCAGCACCGTGAACTTGTCTGAGAATAGCAGTGTTGTCATCCCCCCACCCGACTACTTGGAATGCTTGTCCATGGGGGCAGCTGCCGACAGGAGAGCAGATTCGGCCAGGACGACATCCACCTTTAAGGCCCCAGCGTCCAAGCCCGAGACCGCGGCTCCTAACGATGCCAACGGGACTGCAAAGCCGCCTTTTCTCAGCGGAGAAAACCCCTTTGCCACTGTGAAACTCCGCCCGACTGTGACGAATGATCGCTCGGCACCCATCATTCGATGA MAEAATGFLEQLKSCIVWSWTYLWTVWFFIVLFLVYILRVPLKINDNLSTVSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSSNNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHLRPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTIAEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDL*SWQEKPTTMEWPRSVRLPLGPPCQLNWDMSS*RFQVPTRNSTRVLMKILKNSTKRLSMSWRRR*NLT*NI*TQL*KDTKQNTRIN*SLWRNPKLS*RRSEGKAKEAETHSNMNTKKLSMWRPLLLVRVKSRNSLQMVAKRLCLKRRGASAFWLISTVALQTTYIIITYSLQNY*IPSCLGGRRPVLMPSKCQRKS*I*SKK*RPQPLPPCLELLRLHP*SREAMWLGKITTPFLNAHQRCPPLLQAEHIPVP*SICLITQPRLPRIHKG*IIQQVLPKIPVYSDQFRLQRD*T**RSRK*RPSSRTLRAPTRPYSALHREMSSRCSSPRRRMAGSMENTTCPRRGVGSRRRTRSCWKKMRQKQ*PCPRQAPHQ*EASAP*TCLRIAVLSSPHPTTWNACPWGQLPTGEQIRPGRHPPLRPQRPSPRPRLLTMPTGLQSRLFSAEKTPLPL*NSARL*RMIARHPSFD FALSE TRUE hsa-mir-6132 chr7:117020211-117020319:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30902 FHOD3::DLGAP1 ENSG00000134775.16::ENSG00000170579.19 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1301 FALSE NA FALSE NA FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36372744:+ chr18:33877676-34360183:+ chr18:33952707:+ DLGAP1 ENSG00000170579.19 protein_coding - - chr18:3496032-4455307:- chr18:3582248:- chr18:3496030-4455307:- chr18:3582246:- chr18:36402152,chr18:36402148,chr18:36402148 chr18:3692309,chr18:3692313,chr18:3692279 NA NA chr18:33982115,chr18:33982111,chr18:33982111 chr18:3692309,chr18:3692313,chr18:3692279 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Formin_GBD_N|6-123|1.2e-55^Drf_GBD|140-217|1.4e-05 none ["DLGAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:31.84Mb] 58 23 58 23 ONLY_REF_SPLICE YES_LDAS 0.9417 GT 1.8892 AG 1.8295 ENST00000590592.6 1-337 ENST00000400147.6 686-2028 chr18|+|[0]36297836-36298000[2]|[0]36355539-36355645[1]|[2]36372680-36372744[0]<==>chr18|-|[2]3499185-3499394[0]|[2]3502493-3502645[0]|[2]3508570-3508661[1]|[0]3534194-3534615[2]|[1]3567490-3567581[0]|[2]3581875-3582248[1] atggccacgctggcttgccgggtgcagttcttggacgacacggaccctttcaacagcaccaacttccccgagcccagccggccgccgctgttcacgttccgcgaggacctcgcgctcggcacccagctggcgggggtccataggctgctgcaggcgccgcacaagctggatgactgtactctgcagctctctcacaatggcgcctacctggatttggaggccaccctggcagagcagcgggatgagttggaaggcttccaggatgacgccgggcggggcaagaagcacagcatcatcctaaggacgcagctgtctgtgagggtccatgcctgcatcgTGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCAGCCCAGGATGCCTACATGGACGGACAGGGCCAGCGAGGAGATATTATCAGCCAGTCTGGACTCAGCAACTCCACCGAGAGCCTGGACAGTATGAAGGCTCTGACAGCCGCCATCGAAGCTGCAAACGCCCAGATCCATGGCCCTGCCAGTCAACACATGGGCAATAACACTGCCACCGTCACCACCACGACTACCATAGCCACCGTCACCACGGAGGACAGGAAGAAGGACCACTTTAAGAAAAATCGATGCCTGTCTATCGGGATACAGGTGGATGATGCTGAAGAACCTGACAAAACAGGGGAGAATAAAGCACCCAGTAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGTTCACTCGATCCAACAGTGTGACGACAGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTCTCTGGAATCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCCCGCGATGCCAGCACCTCCACAGTCAGCATTCAGGGCTCAGGAAACCATTACCATGCCTGTGCCGCCGATGATGACTTTGACACGGATTTTGACCCCTCTATTCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACTGAAGACCCTCTGGAGGCCGTGCAAAGGTCAGTGTGCCACCGGGATGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGAGACCGCATGGAGGGGTGGTGTCAACAGATGGAGCGGGAAGAACGGGAAAACAACCTGCCCGAAGACATTCTAGGAAAAATCCGAACCGCAGTGGGCAGTGCCCAACTTCTCATGGCCCAGAAATTCTACCAGTTCAGAGAACTGTGTGAAGAAAACCTGAATCCTAATGCTCATCCAAGACCCACCTCCCAGGATTTGGCGGGGTTTTGGGACATGCTGCAGTTGTCCATAGAAAATATTAGTATGAAATTTGATGAACTTCATCAGTTAAAGGCCAATAATTGGAAACAGATGGATCCTCTTGACAAGAAGGAGAGAAGGGCCCCTCCTCCAGTGCCAAAGAAGCCGGCGAAGGGCCCCGCGCCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCGCAAGCGCCTGATGGCCGCCAAGCGCGCCGCGTCCGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGCATCGAGATCTACATCCCCGAGGCGCAGACCCGGCTCTGA MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACIVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMDGQGQRGDIISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGNNTATVTTTTTIATVTTEDRKKDHFKKNRCLSIGIQVDDAEEPDKTGENKAPSKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKERRAPPPVPKKPAKGPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAESIEIYIPEAQTRL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30903 MYO1D::ASIC2 ENSG00000176658.17::ENSG00000108684.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1303 FALSE NA FALSE NA MYO1D ENSG00000176658.17 protein_coding - - chr17:32492522-32877177:- chr17:32876778:- chr17:30819540-31204195:- chr17:31203796:- ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33025982:- chr17:31340105-32501983:- chr17:31353000:- chr17:32839285,chr17:32839289,chr17:32839289 chr17:33028270,chr17:33028210,chr17:33028271 NA NA chr17:31166303,chr17:31166307,chr17:31166307 chr17:31355288,chr17:31355228,chr17:31355289 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Myosin_head-PARTIAL|13-95~|3.9e-247^AAA_16-PARTIAL|71-95~|5.8e-05^nSTAND3-PARTIAL|82-95~|9.3e-07^TsaE-PARTIAL|84-95~|0.00028^Sigma54_activat-PARTIAL|85-95~|3.5e-05^AAA_19-PARTIAL|87-95~|0.00027^Zeta_toxin-PARTIAL|89-95~|4.3e-05^AAA_22-PARTIAL|92-95~|7.5e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.14Mb] 23 7 23 7 ONLY_REF_SPLICE YES_LDAS 0.3488 GT 1.8892 AG 1.8062 ENST00000579584.5 1-95 ENST00000225823.7 1139-1692 chr17|-|[1]32876778-32876872[0]<==>chr17|-|[2]33013965-33014066[0]|[2]33015971-33016039[0]|[2]33017605-33017684[1]|[0]33021219-33021310[2]|[1]33023861-33024014[1]|[0]33025926-33025982[1] atggcggagcaggagagcctggaattcggcaaggcagacttcgtgctgatggacaccgtctccatgcccgagttcatggccaacctcaggctcagGGGATGCCCCTTTTTGTACCCCTGAGCAGCACAAGGAGTGTGCAGAGCCTGCCCTAGGTCTGTTGGCGGAAAAGGACAGCAATTACTGTCTCTGCAGGACACCCTGCAACCTAACCCGCTACAACAAAGAGCTCTCCATGGTGAAGATCCCCAGCAAGACATCAGCCAAGTACCTTGAGAAGAAATTTAACAAATCAGAAAAATATATCTCAGAGAACATCCTTGTTCTGGATATATTTTTTGAAGCTCTCAATTATGAGACAATTGAACAGAAGAAGGCGTATGAAGTTGCTGCCTTACTTGGTGATATTGGTGGTCAGATGGGATTGTTCATTGGTGCTAGTATCCTTACAATACTAGAGCTCTTTGATTATATTTATGAGCTGATCAAAGAGAAGCTATTAGACCTGCTTGGCAAAGAGGAGGACGAAGGGAGCCACGATGAGAATGTGAGTACTTGTGACACAATGCCAAACCACTCTGAAACCATCAGTCACACTGTGAACGTGCCCCTGCAGACGACCCTGGGGACCTTGGAGGAGATTGCCTGCTGA MAEQESLEFGKADFVLMDTVSMPEFMANLRLRGCPFLYP*AAQGVCRACPRSVGGKGQQLLSLQDTLQPNPLQQRALHGEDPQQDISQVP*EEI*QIRKIYLREHPCSGYIF*SSQL*DN*TEEGV*SCCLTW*YWWSDGIVHWC*YPYNTRAL*LYL*ADQREAIRPAWQRGGRREPR*ECEYL*HNAKPL*NHQSHCERAPADDPGDLGGDCLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30905 SLC29A4::TRRAP ENSG00000164638.11::ENSG00000196367.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1304 FALSE NA FALSE NA SLC29A4 ENSG00000164638.11 protein_coding + + chr7:5274369-5306912:+ chr7:5287985:+ chr7:5314000-5346543:+ chr7:5327616:+ TRRAP ENSG00000196367.15 protein_coding + + chr7:98877933-99050831:+ chr7:98925112:+ chr7:98475556-98648454:+ chr7:98522735:+ chr7:5289733,chr7:5289731,chr7:5289731 chr7:98924844,chr7:98924516,chr7:98924832 NA NA chr7:5329364,chr7:5329362,chr7:5329362 chr7:98522467,chr7:98522139,chr7:98522455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none FAT|2858-3200|5.1e-79^TPR_21|3083-3144|0.001^TPR_2|3115-3143|0.11^PI3_PI4_kinase|3552-3796|2e-22^GIT1_C|3790-3863|0.0015^FATC|3846-3873|3.1e-08 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:93.57Mb] 13 4 13 4 ONLY_REF_SPLICE YES_LDAS 0.1976 GT 1.9329 AG 1.9899 ENST00000434816.5 1-169 ENST00000456197.2 2824-11622 chr7|+|[0]5287817-5287985[0]<==>chr7|+|[0]98925112-98925263[1]|[2]98927167-98927366[0]|[1]98929989-98930206[2]|[0]98930633-98930830[2]|[0]98931405-98931665[2]|[0]98933241-98933402[2]|[0]98935579-98935675[0]|[1]98937156-98937277[2]|[0]98937650-98937820[2]|[0]98942949-98943017[2]|[0]98945747-98945800[2]|[0]98945930-98945950[2]|[0]98948221-98948340[2]|[0]98948566-98948685[2]|[0]98949417-98949581[2]|[0]98949660-98949841[1]|[2]98950064-98950262[2]|[0]98950876-98951004[2]|[0]98953167-98953433[2]|[0]98955098-98955304[2]|[0]98956146-98956304[2]|[0]98956399-98956533[2]|[0]98957981-98958091[2]|[0]98959344-98959490[2]|[0]98961261-98961474[0]|[1]98962302-98962427[0]|[1]98964629-98964775[0]|[1]98965696-98965895[2]|[0]98967041-98967162[1]|[2]98967485-98967698[2]|[0]98970112-98970291[2]|[0]98971799-98971945[2]|[0]98976149-98976268[2]|[0]98976483-98976770[2]|[0]98976939-98977076[2]|[0]98978211-98978323[1]|[2]98978769-98978904[2]|[0]98981769-98981960[2]|[0]98983264-98983459[0]|[1]98984093-98984358[2]|[0]98984944-98985044[1]|[2]98988765-98988966[2]|[0]98990455-98990619[2]|[0]98992137-98992227[0]|[1]98993538-98993737[2]|[0]98994587-98994848[0]|[1]99004190-99004415[1]|[2]99005131-99005348[0]|[1]99008377-99008561[2]|[0]99011052-99011255[2]|[0]99011341-99011535[2]|[0]99012071-99012355[2] atgggctccgtggggagccagcgccttgaggagcccagcgtggcaggcacaccagacccgggcgtagtgatgagcttcaccttcgacagtcaccagctggaggaggcggcggaggcggctcagggccagggccttagggccaggggcgtcccagctttcacggatactaGCCATTGAAACTGCTCTGGACTGCCTGAAAAGCGCCAACACTGAGCCCTACTACCGGAGGCAGGCGTGGGAAGTGATCAAATGCTTCCTGGTGGCCATGATGAGCCTGGAGGACAACAAGCACGCACTCTACCAGCTCCTGGCACACCCCAACTTTACAGAAAAGACCATCCCCAATGTTATCATCTCACATCGCTACAAAGCCCAGGACACTCCAGCCCGGAAGACTTTTGAGCAGGCCCTGACAGGCGCCTTCATGTCTGCTGTCATTAAGGACCTGCGGCCCAGCGCCCTGCCCTTTGTCGCCAGCTTGATCCGCCACTATACGATGGTGGCAGTCGCCCAGCAGTGTGGCCCTTTCTTGCTGCCTTGCTACCAGGTGGGCAGCCAGCCCAGCACAGCCATGTTTCACAGTGAAGAAAATGGCTCGAAAGGAATGGATCCTTTGGTTCTCATTGATGCAATTGCTATTTGTATGGCATATGAAGAAAAGGAGCTTTGCAAAATCGGGGAGGTGGCCCTAGCTGTGATATTTGATGTTGCAAGTATCATCCTGGGCTCCAAGGAGAGGGCCTGCCAGCTGCCCCTGTTTTCTTACATCGTGGAGCGCCTGTGTGCATGTTGTTATGAACAGGCGTGGTATGCAAAGCTGGGGGGTGTGGTGTCTATTAAGTTTCTCATGGAGCGGCTGCCTCTCACTTGGGTTCTCCAGAACCAGCAGACATTCCTGAAAGCACTTCTCTTTGTCATGATGGACTTAACTGGAGAGGTTTCCAATGGGGCAGTCGCTATGGCAAAGACCACGCTGGAGCAGCTTCTGATGCGGTGCGCAACGCCTTTAAAAGACGAGGAGAGAGCCGAAGAGATCGTGGCCGCCCAGGAAAAGTCTTTCCACCATGTGACACACGACTTGGTTCGAGAAGTCACCTCTCCAAACTCCACTGTGAGGAAGCAGGCCATGCATTCGCTGCAGGTGTTGGCCCAGGTCACTGGGAAGAGTGTCACGGTGATCATGGAACCCCACAAAGAGGTCCTGCAGGATATGGTCCCCCCTAAGAAGCACCTGCTCCGACACCAGCCTGCCAACGCACAGATTGGCCTGATGGAGGGGAACACGTTCTGTACCACGTTGCAGCCCAGGCTCTTCACAATGGACCTTAACGTGGTGGAGCATAAGGTGTTCTACACAGAGCTGTTGAATTTGTGTGAGGCTGAAGATTCAGCTTTAACAAAGCTGCCCTGTTATAAAAGCCTTCCGTCACTCGTACCTTTACGAATTGCGGCATTAAATGCACTTGCTGCCTGCAATTACCTTCCTCAGTCCAGGGAGAAAATCATCGCTGCACTCTTCAAAGCCCTGAATTCCACCAATAGTGAGCTCCAAGAGGCCGGAGAAGCCTGTATGAGAAAGTTTTTAGAAGGTGCTACCATAGAAGTCGATCAAATCCACACACATATGCGACCTTTGCTGATGATGCTGGGAGATTACCGGAGCTTGACGCTGAATGTTGTGAATCGCCTGACTTCGGTCACGAGGCTCTTCCCAAATTCCTTCAATGATAAATTTTGTGATCAGATGATGCAACATCTGCGCAAGTGGATGGAAGTGGTGGTGATCACCCACAAAGGGGGCCAGAGGAGCGACGGAAACGAAAGCATTTCCGAGTGCGGGAGATGTCCCTTGTCTCCATTCTGTCAGTTTGAGCCTGCCATGGAAGGGGTAGAGGAAATGAAGATTTGCTCAGCAATTATAAACCTTTTTCATCTGATCCCGGCTGCTCCTCAGACACTGGTGAAGCCTTTGCTAGAGGTTGTCATGAAAACGGAGCGGGCGATGCTGATCGAGGCGGGGAGTCCATTCCGAGAGCCCCTGATCAAGTTCCTGACTCGACATCCCTCGCAGACAGTGGAGCTGTTCATGATGGAAGCCACACTGAACGATCCCCAGTGGAGCAGAATGTTTATGAGTTTTTTAAAACACAAAGACGCCAGACCTCTGCGGGATGTGCTGGCTGCCAACCCCAACAGGTTCATCACCCTGCTGCTGCCGGGGGGTGCCCAGACGGCTGTGCGCCCCGGTTCGCCCAGCACCAGCACCATGCGCCTGGACCTCCAGTTCCAGGCCATCAAGATCATAAGCATTATAGTGAAAAACGATGACTCCTGGCTGGCCAGCCAGCACTCTCTGGTGAGCCAGTTGCGACGTGTGTGGGTGAGTGAGAACTTCCAAGAGAGGCACCGCAAGGAGAACATGGCAGCCACCAACTGGAAGGAGCCCAAGCTGCTGGCCTACTGCCTGCTGAACTACTGCAAAAGGAATTACGGAGATATAGAATTGCTGTTCCAGCTGCTCCGAGCCTTTACTGGTCGTTTTCTCTGCAACATGACATTCTTAAAAGAGTATATGGAGGAAGAGATTCCCAAAAATTACAGCATCGCTCAGAAACGTGCCCTGTTCTTTCGCTTTGTAGACTTCAACGACCCCAACTTCGGAGATGAATTAAAAGCTAAAGTTCTGCAGCATATCTTGAATCCTGCTTTCTTGTACAGCTTTGAGAAGGGGGAAGGAGAGCAGCTCTTGGGACCTCCCAATCCAGAAGGAGATAACCCAGAAAGCATCACCAGTGTGTTTATTACCAAGGTCCTGGACCCCGAGAAGCAGGCGGACATGCTGGACTCGCTGCGGATCTACCTGCTGCAGTACGCCACGCTGCTGGTGGAGCACGCCCCCCACCACATCCATGACAACAACAAGAACCGCAACAGCAAGCTGCGCCGCCTCATGACCTTCGCCTGGCCCTGCCTGCTCTCCAAGGCCTGCGTGGACCCAGCCTGCAAGTACAGCGGACACTTGCTCCTGGCGCACATTATCGCCAAATTCGCCATACACAAGAAGATCGTCCTGCAGGTTTTTCATAGTCTCCTCAAGGCTCACGCAATGGAAGCTCGAGCGATCGTCAGACAGGCGATGGCCATTCTGACCCCGGCGGTGCCGGCCAGGATGGAGGACGGGCACCAGATGCTGACCCACTGGACCCGGAAGATCATTGTGGAGGAGGGGCACACCGTCCCGCAGCTGGTCCACATTCTGCACCTGATAGTGCAACACTTCAAGGTGTACTACCCGGTACGGCACCACTTGGTGCAGCACATGGTGAGCGCCATGCAGAGGCTGGGCTTCACGCCCAGTGTCACCATCGAGCAGAGGCGGCTGGCCGTGGACCTGTCTGAAGTCGTCATCAAGTGGGAGCTGCAGAGGATCAAGGACCAGCAGCCGGATTCAGATATGGACCCAAATTCCAGTGGAGAAGGAGTCAATTCTGTCTCATCCTCCATTAAGAGAGGCCTGTCCGTGGATTCTGCCCAGGAAGTGAAACGCTTTAGGACGGCCACCGGAGCCATCAGTGCAGTCTTTGGGAGGAGCCAGTCGCTACCTGGAGCAGACTCTCTCCTCGCCAAGCCCATTGACAAGCAGCACACAGACACTGTGGTGAACTTCCTTATCCGCGTGGCCTGTCAGGTTAATGACAACACCAACACAGCGGGGTCCCCTGGGGAGGTGCTCTCTCGCCGGTGTGTGAACCTTCTGAAGACTGCGTTGCGGCCAGACATGTGGCCCAAGTCCGAACTCAAGCTGCAGTGGTTCGACAAGCTGCTGATGACTGTGGAGCAGCCAAACCAAGTGAACTATGGGAATATCTGCACGGGCCTAGAAGTGCTGAGCTTCCTGCTAACTGTCCTCCAGTCCCCAGCCATCCTCAGTAGCTTCAAACCTCTGCAGCGTGGAATTGCCGCCTGCATGACATGTGGAAACACCAAGGTGTTGCGAGCCGTCCACAGCCTTCTCTCGCGCCTGATGAGCATTTTCCCAACAGAGCCGAGTACTTCCAGTGTGGCCTCCAAATATGAAGAGCTGGAGTGCCTCTACGCAGCCGTCGGAAAGGTCATCTATGAAGGGCTCACCAACTACGAGAAGGCCACCAATGCCAATCCCTCCCAGCTCTTCGGGACCCTTATGATCCTCAAGTCTGCCTGCAGCAACAACCCCAGCTACATAGACAGGCTGATCTCCGTCTTTATGCGCTCCCTGCAGAAGATGGTCCGGGAGCATTTAAACCCTCAGGCAGCGTCAGGAAGCACCGAAGCCACCTCAGGTACAAGCGAGCTGGTGATGCTGAGTCTGGAGCTGGTGAAGACGCGCCTGGCAGTGATGAGCATGGAGATGCGGAAGAACTTCATCCAGGCCATCCTGACATCCCTCATCGAAAAATCACCAGATGCCAAAATCCTCCGGGCTGTGGTCAAAATCGTGGAAGAATGGGTCAAGAATAACTCCCCAATGGCAGCCAATCAGACACCTACACTCCGGGAGAAGTCCATTTTGCTTGTGAAGATGATGACTTACATAGAAAAACGCTTTCCGGAAGACCTTGAATTAAATGCCCAGTTTTTAGATCTTGTTAACTATGTCTACAGGGATGAGACCCTCTCTGGCAGCGAGCTGACGGCGAAACTTGAGCCTGCCTTTCTCTCTGGGCTGCGCTGTGCCCAGCCACTCATCAGGGCAAAGTTTTTCGAGGTTTTTGACAACTCCATGAAACGTCGTGTCTACGAGCGCTTGCTCTATGTGACCTGTTCGCAGAACTGGGAAGCCATGGGGAACCACTTCTGGATCAAGCAGTGCATTGAGCTGCTTCTGGCCGTGTGTGAGAAGAGCACCCCCATTGGCACCAGCTGCCAAGGAGCCATGCTCCCGTCCATCACCAACGTCATCAACCTGGCCGATAGCCACGACCGTGCCGCCTTCGCCATGGTCACACATGTCAAGCAGGAGCCCCGGGAGCGGGAGAACAGCGAGTCCAAAGAGGAGGATGTAGAGATAGACATCGAACTAGCTCCTGGGGATCAGACCAGCACGCCCAAAACCAAAGAACTTTCAGAAAAGGACATTGGAAACCAGCTGCACATGCTAACCAACAGGCACGACAAGTTTCTGGACACTCTCCGAGAGGTGAAGACTGGAGCGCTGCTCAGCGCTTTCGTTCAGCTGTGCCACATTTCCACGACGCTGGCAGAGAAGACGTGGGTCCAGCTTTTCCCCAGATTGTGGAAGATCCTCTCTGACAGACAGCAGCATGCACTCGCGGGTGAGATAAGTCCATTTCTGTGCAGCGGCAGTCACCAGGTGCAGCGGGACTGCCAGCCCAGCGCGCTGAACTGCTTTGTGGAAGCCATGTCCCAGTGCGTGCCGCCAATCCCCATCCGACCCTGCGTCCTGAAGTACCTGGGGAAGACACACAACCTCTGGTTCCGGTCCACGCTGATGTTGGAGCACCAGGCTTTTGAAAAGGGTCTGAGTCTTCAGATTAAGCCGAAGCAAACAACGGAGTTTTATGAGCAGGAGAGCATCACCCCGCCGCAGCAGGAGATACTGGATTCCCTTGCGGAGCTTTACTCCCTGTTACAAGAGGAAGATATGTGGGCTGGTCTGTGGCAGAAGCGGTGCAAGTACTCGGAGACAGCGACTGCGATTGCTTACGAGCAGCACGGGTTCTTTGAGCAGGCACAAGAATCCTATGAAAAGGCAATGGATAAAGCCAAAAAAGAACATGAGAGGAGTAACGCCTCCCCTGCTATTTTCCCTGAATACCAGCTCTGGGAAGACCACTGGATTCGATGCTCCAAGGAATTGAACCAGTGGGAAGCCCTGACGGAGTACGGTCAGTCCAAAGGCCACATCAACCCCTACCTCGTCCTGGAGTGCGCCTGGCGGGTGTCCAACTGGACTGCCATGAAGGAGGCGCTGGTGCAGGTGGAAGTGAGCTGTCCGAAGGAGATGGCCTGGAAGGTGAACATGTACCGCGGATACCTGGCCATCTGCCACCCCGAGGAGCAGCAGCTCAGCTTCATCGAGCGCCTGGTGGAGATGGCCAGCAGCCTGGCCATCCGCGAGTGGCGGCGGCTGCCCCACGTAGTGTCCCACGTGCACACGCCTCTCCTACAGGCAGCCCAGCAAATCATCGAACTCCAGGAAGCTGCACAAATCAACGCAGGCTTACAGCCAACCAACCTGGGAAGGAACAACAGCCTGCACGACATGAAGACGGTGGTGAAGACCTGGAGGAACCGACTGCCCATCGTGTCTGACGACTTGTCCCACTGGAGCAGCATCTTCATGTGGAGGCAGCATCATTACCAGGCGATTGTAACTGCCTATGAGAATAGCTCTCAGCATGATCCCAGTTCAAATAACGCTATGCTTGGGGTTCATGCATCAGCTTCAGCGATCATCCAGTATGGAAAAATCGCCCGGAAACAAGGACTGGTCAATGTAGCTCTGGATATATTAAGTCGGATTCATACTATTCCAACTGTTCCTATCGTGGATTGCTTCCAGAAGATTCGACAGCAAGTTAAATGCTACCTCCAGCTGGCAGGCGTCATGGGCAAAAACGAGTGCATGCAGGGCCTTGAAGTTATTGAATCTACAAATTTAAAATACTTCACAAAAGAGATGACAGCCGAATTTTATGCACTGAAGGGAATGTTCTTGGCTCAGATCAACAAGTCCGAGGAGGCAAACAAAGCCTTCTCTGCAGCTGTGCAGATGCACGATGTGCTGGTGAAAGCCTGGGCCATGTGGGGCGACTACCTGGAGAACATCTTTGTGAAGGAGCGGCAGCTGCACCTGGGCGTGTCTGCCATCACCTGCTACCTGCACGCCTGCCGGCATCAGAACGAGAGCAAATCGAGGAAATACTTAGCCAAGGTGCTGTGGCTTTTGAGTTTTGATGATGACAAAAACACTTTGGCAGATGCCGTCGACAAGTACTGCATTGGTGTGCCACCCATCCAGTGGCTGGCCTGGATCCCACAGCTGCTCACCTGCCTGGTTGGCTCGGAGGGAAAGCTGCTCTTGAACCTCATTAGCCAGGTTGGACGCGTGTATCCCCAAGCGGTCTACTTTCCCATCCGGACCCTGTACCTGACCCTGAAAATAGAACAGCGGGAACGCTACAAGAGCGATTCTGGACAGCAGCAGCCAAGTTCAGTGGGTAACCAGTCCCATTCTGCATCAGATCCAGGGCCCATAAGAGCAACAGCACCCATGTGGCGCTGCAGCCGAATCATGCACATGCAGCGAGAGCTCCACCCCACCCTTCTGTCTTCCCTGGAAGGCATCGTCGATCAGATGGTCTGGTTCAGAGAAAATTGGCATGAAGAGGTTCTCAGGCAGCTCCAACAGGGCCTGGCGAAATGTTACTCCGTGGCGTTTGAGAAAAGTGGAGCGGTGTCCGATGCTAAAATCACCCCCCACACTCTCAATTTTGTGAAGAAGTTGGTGAGCACGTTTGGGGTGGGCCTGGAGAATGTGTCCAACGTCTCGACCATGTTCTCCAGCGCAGCCTCTGAGTCTCTGGCCCGGCGGGCGCAGGCCACTGCACAAGACCCTGTCTTTCAGAAGCTGAAAGGCCAGTTCACGACGGATTTTGACTTCAGCGTTCCAGGATCCATGAAGCTTCATAATCTTATTTCTAAGTTGAAAAAGTGGATCAAAATCTTGGAGGCCAAGACCAAGCAACTCCCCAAATTCTTCCTCATAGAGGAAAAGTGCCGGTTCTTGAGCAATTTCTCGGCACAGACAGCTGAAGTGGAAATTCCTGGGGAGTTTCTGATGCCAAAGCCAACGCATTATTACATCAAGATTGCACGGTTCATGCCCCGGGTAGAGATTGTGCAGAAGCACAACACCGCAGCCCGGCGGCTGTACATCCGGGGACACAATGGCAAGATCTACCCATACCTCGTCATGAACGACGCCTGCCTCACAGAGTCACGGCGAGAGGAGCGTGTGTTGCAGCTGCTGCGTCTGCTGAACCCCTGTTTGGAGAAGAGAAAGGAGACCACCAAGAGGCACTTGTTTTTCACAGTGCCCCGGGTTGTGGCAGTTTCCCCACAGATGCGCCTCGTGGAGGACAACCCCTCTTCACTTTCCCTTGTGGAGATCTACAAGCAGCGCTGCGCCAAGAAGGGCATCGAGCATGACAACCCCATCTCCCGTTACTATGACCGGCTGGCTACGGTGCAGGCGCGGGGAACCCAAGCCAGCCACCAGGTCCTCCGCGACATCCTCAAGGAGGTTCAGAGTAACATGGTGCCGCGCAGCATGCTCAAGGAGTGGGCGCTGCACACCTTCCCCAATGCCACGGACTACTGGACGTTCCGGAAGATGTTCACCATCCAGCTGGCTCTGATAGGCTTCGCGGAATTCGTCCTGCATTTAAATAGACTCAACCCCGAGATGTTACAGATCGCTCAGGACACTGGCAAACTGAATGTTGCCTACTTTCGATTTGACATAAACGACGCGACTGGAGACCTGGATGCCAACCGTCCTGTCCCATTTCGACTCACGCCCAACATTTCTGAGTTTCTGACCACCATCGGGGTCTCCGGCCCGTTGACAGCGTCCATGATTGCGGTCGCCCGGTGCTTCGCCCAGCCAAACTTTAAGGTGGATGGCATTCTGAAAACGGTTCTCCGGGACGAGATCATTGCTTGGCACAAAAAAACACAAGAGGACACGTCCTCTCCTCTCTCGGCCGCCGGGCAGCCAGAGAACATGGACAGCCAGCAACTGGTGTCCCTGGTTCAGAAAGCCGTCACCGCCATCATGACCCGCCTGCACAACCTCGCCCAGTTCGAAGGCGGGGAAAGCAAGGTGAACACCCTGGTGGCCGCGGCAAACAGCCTGGACAATCTGTGCCGCATGGACCCCGCCTGGCACCCCTGGCTGTGA MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDTSH*NCSGLPEKRQH*ALLPEAGVGSDQMLPGGHDEPGGQQARTLPAPGTPQLYRKDHPQCYHLTSLQSPGHSSPEDF*AGPDRRLHVCCH*GPAAQRPALCRQLDPPLYDGGSRPAVWPFLAALLPGGQPAQHSHVSQ*RKWLERNGSFGSH*CNCYLYGI*RKGALQNRGGGPSCDI*CCKYHPGLQGEGLPAAPVFLHRGAPVCMLL*TGVVCKAGGCGVY*VSHGAAASHLGSPEPADIPESTSLCHDGLNWRGFQWGSRYGKDHAGAASDAVRNAFKRRGESRRDRGRPGKVFPPCDTRLGSRSHLSKLHCEEAGHAFAAGVGPGHWEECHGDHGTPQRGPAGYGPP*EAPAPTPACQRTDWPDGGEHVLYHVAAQALHNGP*RGGA*GVLHRAVEFV*G*RFSFNKAALL*KPSVTRTFTNCGIKCTCCLQLPSSVQGENHRCTLQSPEFHQ**APRGRRSLYEKVFRRCYHRSRSNPHTYATFADDAGRLPELDAECCESPDFGHEALPKFLQ**IL*SDDATSAQVDGSGGDHPQRGPEERRKRKHFRVREMSLVSILSV*ACHGRGRGNEDLLSNYKPFSSDPGCSSDTGEAFARGCHENGAGDADRGGESIPRAPDQVPDSTSLADSGAVHDGSHTERSPVEQNVYEFFKTQRRQTSAGCAGCQPQQVHHPAAAGGCPDGCAPRFAQHQHHAPGPPVPGHQDHKHYSEKR*LLAGQPALSGEPVATCVGE*ELPREAPQGEHGSHQLEGAQAAGLLPAELLQKELRRYRIAVPAAPSLYWSFSLQHDILKRVYGGRDSQKLQHRSETCPVLSLCRLQRPQLRR*IKS*SSAAYLESCFLVQL*EGGRRAALGTSQSRRR*PRKHHQCVYYQGPGPREAGGHAGLAADLPAAVRHAAGGARPPPHP*QQQEPQQQAAPPHDLRLALPALQGLRGPSLQVQRTLAPGAHYRQIRHTQEDRPAGFS*SPQGSRNGSSSDRQTGDGHSDPGGAGQDGGRAPDADPLDPEDHCGGGAHRPAAGPHSAPDSATLQGVLPGTAPLGAAHGERHAEAGLHAQCHHRAEAAGRGPV*SRHQVGAAEDQGPAAGFRYGPKFQWRRSQFCLILH*ERPVRGFCPGSETL*DGHRSHQCSLWEEPVATWSRLSPRQAH*QAAHRHCGELPYPRGLSG**QHQHSGVPWGGALSPVCEPSEDCVAARHVAQVRTQAAVVRQAADDCGAAKPSELWEYLHGPRSAELPANCPPVPSHPQ*LQTSAAWNCRLHDMWKHQGVASRPQPSLAPDEHFPNRAEYFQCGLQI*RAGVPLRSRRKGHL*RAHQLREGHQCQSLPALRDPYDPQVCLQQQPQLHRQADLRLYALPAEDGPGAFKPSGSVRKHRSHLRYKRAGDAESGAGEDAPGSDEHGDAEELHPGHPDIPHRKITRCQNPPGCGQNRGRMGQE*LPNGSQSDTYTPGEVHFACEDDDLHRKTLSGRP*IKCPVFRSC*LCLQG*DPLWQRADGET*ACLSLWAALCPATHQGKVFRGF*QLHETSCLRALALCDLFAELGSHGEPLLDQAVH*AASGRV*EEHPHWHQLPRSHAPVHHQRHQPGR*PRPCRLRHGHTCQAGAPGAGEQRVQRGGCRDRHRTSSWGSDQHAQNQRTFRKGHWKPAAHANQQARQVSGHSPRGEDWSAAQRFRSAVPHFHDAGREDVGPAFPQIVEDPL*QTAACTRG*DKSISVQRQSPGAAGLPAQRAELLCGSHVPVRAANPHPTLRPEVPGEDTQPLVPVHADVGAPGF*KGSESSD*AEANNGVL*AGEHHPAAAGDTGFPCGALLPVTRGRYVGWSVAEAVQVLGDSDCDCLRAARVL*AGTRIL*KGNG*SQKRT*EE*RLPCYFP*IPALGRPLDSMLQGIEPVGSPDGVRSVQRPHQPLPRPGVRLAGVQLDCHEGGAGAGGSELSEGDGLEGEHVPRIPGHLPPRGAAAQLHRAPGGDGQQPGHPRVAAAAPRSVPRAHASPTGSPANHRTPGSCTNQRRLTANQPGKEQQPARHEDGGEDLEEPTAHRV*RLVPLEQHLHVEAASLPGDCNCL*E*LSA*SQFK*RYAWGSCISFSDHPVWKNRPETRTGQCSSGYIKSDSYYSNCSYRGLLPEDSTAS*MLPPAGRRHGQKRVHAGP*SY*IYKFKILHKRDDSRILCTEGNVLGSDQQVRGGKQSLLCSCADARCAGESLGHVGRLPGEHLCEGAAAAPGRVCHHLLPARLPASEREQIEEILSQGAVAFEF***QKHFGRCRRQVLHWCATHPVAGLDPTAAHLPGWLGGKAALEPH*PGWTRVSPSGLLSHPDPVPDPENRTAGTLQERFWTAAAKFSG*PVPFCIRSRAHKSNSTHVALQPNHAHAARAPPHPSVFPGRHRRSDGLVQRKLA*RGSQAAPTGPGEMLLRGV*EKWSGVRC*NHPPHSQFCEEVGEHVWGGPGECVQRLDHVLQRSL*VSGPAGAGHCTRPCLSEAERPVHDGF*LQRSRIHEAS*SYF*VEKVDQNLGGQDQATPQILPHRGKVPVLEQFLGTDS*SGNSWGVSDAKANALLHQDCTVHAPGRDCAEAQHRSPAAVHPGTQWQDLPIPRHERRLPHRVTARGACVAAAASAEPLFGEEKGDHQEALVFHSAPGCGSFPTDAPRGGQPLFTFPCGDLQAALRQEGHRA*QPHLPLL*PAGYGAGAGNPSQPPGPPRHPQGGSE*HGAAQHAQGVGAAHLPQCHGLLDVPEDVHHPAGSDRLRGIRPAFK*TQPRDVTDRSGHWQTECCLLSI*HKRRDWRPGCQPSCPISTHAQHF*VSDHHRGLRPVDSVHDCGRPVLRPAKL*GGWHSENGSPGRDHCLAQKNTRGHVLSSLGRRAAREHGQPATGVPGSESRHRHHDPPAQPRPVRRRGKQGEHPGGRGKQPGQSVPHGPRLAPLAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Transformation/transcription domain-associated protein Atypical PIKK TRRAP Q9Y4A5 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE transformation/transcription domain-associated protein 1 Yes melanoma epithelial oncogene missense 30906 IMMP2L::BMT2 ENSG00000184903.10::ENSG00000164603.12 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1305 FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111487238:- chr7:110302700-111202573:- chr7:111127294:- BMT2 ENSG00000164603.12 protein_coding - - chr7:112819147-112939875:- chr7:112822373:- chr7:112459202-112579930:- chr7:112462428:- chr7:111477967,chr7:111477969 chr7:112823772,chr7:112823771 NA NA chr7:111118023,chr7:111118025 chr7:112463827,chr7:112463826 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2798|4-28|3.1e-06^Peptidase_S26|15-78|2.5e-07^Peptidase_S24|31-77|3.4e-05 none ["CCLE_StarF2019"] 12 5 12 5 ONLY_REF_SPLICE YES_LDAS 0.1976 GT 1.8295 AG 1.7819 ENST00000437687.2 1-239 ENST00000297145.9 589-1218 chr7|-|[1]111487238-111487341[0]|[2]111521313-111521447[0]<==>chr7|-|[2]112821744-112822373[0] atggcacagtcacaagggtgggtgaaaagatacatcaaggccttttgtaaaggcttctttgtggcggtgcctgtggcagtgactttcttggatcgggtcgcctgtgtggcaagagtagaaggagcatcgatgcagccttctttgaatcctggggggagccagtcatctgatgtggtgcttttgaaccactggaaagtgaggaattttgaagtacaccgtggtgacattgtatcattggtAGTGTCTATAAATGTGATTTCCTGAACTTACAGCTTCAGCAACCACTCCAGCTTGCACAGGATGCTATAGATGCTTTTTTGAAGCAGCTGAAAAACCCTATTGATTCTCTTCCTGGAGAGCTTTTCCATGTGGTTGTTTTCTCTCTCCTTCTTTCTTATTTTCCATCTCCTTACCAGCGATGGATTTGCTGCAAGAAAGCCCATGAACTGTTAGTGTTAAATGGTTTATTACTAATCATCACACCTGATTCCTCCCATCAGAACCGTCATGCTATGATGATGAAAAGCTGGAAGATTGCTATAGAGTCCCTGGGCTTTAAACGCTTCAAGTACTCAAAATTTTCACATATGCATCTGATGGCATTTAGGAAAATCTCTCTAAAAACCACAAGTGACTTGGTTAGTAGGAACTACCCAGGAATGTTATATATTCCTCAAGATTTCAACAGTATAGAAGATGAGGAATATTCTAACCCTTCCTGCTATGTTCGATCAGATATAGAAGATGAACAACTAGCATATGGTTTCACAGAACTCCCTGATGCGCCATATGACTCAGATTCTGGAGAAAGTCAAGCCAGCTCTATTCCTTTCTATGAGCTAGAAGACCCCATATTACTTTTAAGTTAA MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNFEVHRGDIVSLVVSINVIS*TYSFSNHSSLHRML*MLF*SS*KTLLILFLESFSMWLFSLSFFLIFHLLTSDGFAARKPMNC*C*MVYY*SSHLIPPIRTVML***KAGRLL*SPWALNASSTQNFHICI*WHLGKSL*KPQVTWLVGTTQECYIFLKISTV*KMRNILTLPAMFDQI*KMNN*HMVSQNSLMRHMTQILEKVKPALFLSMS*KTPYYF*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30907 PRKAG2::RNF32-DT ENSG00000106617.16::ENSG00000182648.15 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PRKAG2 ENSG00000106617.16 protein_coding - - chr7:151556124-151877214:- chr7:151781152:- chr7:151253210-151574299:- chr7:151478238:- RNF32-DT ENSG00000182648.15 lncRNA - - chr7:156388922-156640654:- chr7:156441380:- chr7:156181616-156433348:- chr7:156234074:- chr7:151756623,chr7:151756626,chr7:151756626 chr7:156469515,chr7:156469515,chr7:156469476 NA NA chr7:151453709,chr7:151453712,chr7:151453712 chr7:156262209,chr7:156262209,chr7:156262170 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 3 10 2.73 ONLY_REF_SPLICE YES_LDAS 0.148 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30909 ARHGAP10::EDNRA ENSG00000071205.12::ENSG00000151617.17 COLO741 SRR8615788 SRR8639229 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1307 FALSE NA FALSE NA ARHGAP10 ENSG00000071205.12 protein_coding + + chr4:147732063-148072776:+ chr4:147875150:+ chr4:148653214-148993927:+ chr4:148796301:+ EDNRA ENSG00000151617.17 protein_coding + + chr4:147480917-147544954:+ chr4:147542478:+ chr4:148402069-148466106:+ chr4:148463630:+ chr4:147876241,chr4:147876236 chr4:147541201,chr4:147541193 NA NA chr4:148797392,chr4:148797387 chr4:148462353,chr4:148462345 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BAR_3|6-249|9.2e-90^Arfaptin|25-213|0.021^IMD|32-216|1.1e-05^DUF5975|203-265|3e-06^Arfaptin|228-248|0.95^RhoGAP|238-262|0.42^IMD|243-272|1^PH|269-367|7.2e-12^RhoGAP|398-546|4.3e-44^Arfaptin|504-550|0.36^PH|720-750|5.7^SH3_2|733-785|2.2e-08^SH3_1|734-779|1.6e-10^SH3_9|735-784|4e-12 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.19Mb] 6 3 6 3 ONLY_REF_SPLICE YES_LDAS 0.1047 GT 1.7232 AG 1.7819 ENST00000336498.8 1-832 ENST00000506066.1 817-957 chr4|+|[0]147732302-147732455[0]|[1]147822727-147822822[0]|[1]147822896-147822957[2]|[0]147847151-147847222[2]|[0]147857553-147857654[2]|[0]147864846-147864956[2]|[0]147866712-147866816[2]|[0]147875021-147875150[0]<==>chr4|+|[0]147542478-147542618[2] atggggctgcagcccctggagttcagcgactgctacctcgacagcccgtggttccgggagaggatccgcgctcacgaagcggaactcgagaggaccaacaagttcatcaaagagctcattaaggacgggaagaacctcatcgctgcgacgaaaagtctgtcagtggcccagcggaagtttgctcattcactcagagactttaagtttgagtttatcggtgatgctgtgacagatgatgaacgatgcatagatgcttccttacgtgaattttcaaattttttgaagaatctggaggaacagagagaaattatggcattaagtgtaactgaaaccctgattaaacccttggaaaaattcagaaaagagcaacttggagctgtaaaggaagaaaaaaagaagtttgacaaagagacagaaaagaattatagtctaattgataaacatttgaatttatcagcaaaaaagaaagactcacatttacaagaggcagatatccaagtagagcagaaccggcaacacttctatgaactgtctctcgagtatgtgtgtaagctgcaggaaatccaagaaagaaagaagtttgagtttgtggaacctatgctgtcattttttcaggggatgtttaccttctatcatcagggccatgaacttgccaaagacttcaatcactacaaaatggaactacagatcaacattcagaatacacggaatcgatttgaaggaacaaggtcagaagtggaagagctcatgaacaaaatcagacagaatcccaaggaccacaaacgagcaagtcagtttacagccgaaggctacctgtatgtccaggaaaaaaTCATGCCTCTGCTGCTGCTGTTACCAGTCCAAAAGTCTGATGACCTCGGTCCCCATGAACGGAACAAGCATCCAGTGGAAGAACCACGATCAAAACAACCACAACACAGACCGGAGCAGCCATAAGGACAGCATGAACTGA MGLQPLEFSDCYLDSPWFRERIRAHEAELERTNKFIKELIKDGKNLIAATKSLSVAQRKFAHSLRDFKFEFIGDAVTDDERCIDASLREFSNFLKNLEEQREIMALSVTETLIKPLEKFRKEQLGAVKEEKKKFDKETEKNYSLIDKHLNLSAKKKDSHLQEADIQVEQNRQHFYELSLEYVCKLQEIQERKKFEFVEPMLSFFQGMFTFYHQGHELAKDFNHYKMELQINIQNTRNRFEGTRSEVEELMNKIRQNPKDHKRASQFTAEGYLYVQEKIMPLLLLLPVQKSDDLGPHERNKHPVEEPRSKQPQHRPEQP*GQHEL FALSE TRUE hsa-mir-4799 chr4:147782595-147782668:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 148887990 FALSE 148441003 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30911 NFYC::ZFP69B ENSG00000066136.21::ENSG00000187801.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1308 FALSE NA FALSE NA NFYC ENSG00000066136.21 protein_coding + + chr1:40691648-40771603:+ chr1:40691867:+ chr1:41157320-41237275:+ chr1:41157539:+ ZFP69B ENSG00000187801.15 protein_coding + + chr1:40450102-40463718:+ chr1:40456945:+ chr1:40915774-40929390:+ chr1:40922617:+ chr1:40710579,chr1:40710571,chr1:40710572 chr1:40455311,chr1:40455308,chr1:40455306 NA NA chr1:41176251,chr1:41176243,chr1:41176244 chr1:40920983,chr1:40920980,chr1:40920978 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.23Mb] 656 375 656 375 ONLY_REF_SPLICE YES_LDAS 12.0308 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30912 MFSD2A::LINC02811 ENSG00000168389.18::ENSG00000284678.1 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1309 FALSE NA FALSE NA MFSD2A ENSG00000168389.18 protein_coding + + chr1:39955112-39969968:+ chr1:39955385:+ chr1:40420784-40435640:+ chr1:40421057:+ LINC02811 ENSG00000284678.1 lncRNA - - chr1:39801414-39817460:- chr1:39801484:- chr1:40267086-40283132:- chr1:40267156:- chr1:39955610,chr1:39955610,chr1:39955590,chr1:39955610,chr1:39955606 chr1:39803737,chr1:39803732,chr1:39803738,chr1:39803733,chr1:39803737 NA NA chr1:40421282,chr1:40421282,chr1:40421262,chr1:40421282,chr1:40421278 chr1:40269409,chr1:40269404,chr1:40269410,chr1:40269405,chr1:40269409 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 126 152 126 152 ONLY_REF_SPLICE YES_LDAS 3.244 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30915 TRIT1::BMP8B ENSG00000043514.17::ENSG00000116985.12 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1312 FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- BMP8B ENSG00000116985.12 protein_coding - - chr1:39757182-39788865:- chr1:39775038:- chr1:40222854-40254537:- chr1:40240710:- chr1:39876923 chr1:39782787 NA NA chr1:40342595 chr1:40248459 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 TGF_beta-PARTIAL|~335-401|6.6e-41 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.05Mb];NEIGHBORS[52161] 24 29 23.97 28.97 ONLY_REF_SPLICE YES_LDAS 0.6178 GT 1.9656 AG 1.8295 ENST00000441669.6 1-174 ENST00000372827.8 335-1209 chr1|-|[2]39883318-39883491[0]<==>chr1|-|[2]39760419-39760568[0]|[2]39763092-39763202[0]|[2]39763712-39763791[1]|[0]39764623-39764817[1]|[0]39774308-39774456[2]|[1]39774849-39775038[1] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagTGGAGCGAGACCGTGCCCTGGGCCACCAGGAGCCCCATTGGAAGGAGTTCCGCTTTGACCTGACCCAGATCCCGGCTGGGGAGGCGGTCACAGCTGCGGAGTTCCGGATTTACAAGGTGCCCAGCATCCACCTGCTCAACAGGACCCTCCACGTCAGCATGTTCCAGGTGGTCCAGGAGCAGTCCAACAGGGAGTCTGACTTGTTCTTTTTGGATCTTCAGACGCTCCGAGCTGGAGACGAGGGCTGGCTGGTGCTGGATGTCACAGCAGCCAGTGACTGCTGGTTGCTGAAGCGTCACAAGGACCTGGGACTCCGCCTCTATGTGGAGACTGAGGACGGGCACAGCGTGGATCCTGGCCTGGCCGGCCTGCTGGGTCAACGGGCCCCACGCTCCCAACAGCCTTTCGTGGTCACTTTCTTCAGGGCCAGTCCGAGTCCCATCCGCACCCCTCGGGCAGTGAGGCCACTGAGGAGGAGGCAGCCGAAGAAAAGCAACGAGCTGCCGCAGGCCAACCGACTCCCAGGGATCTTTGATGACGTCCACGGCTCCCACGGCCGGCAGGTCTGCCGTCGGCACGAGCTCTACGTCAGCTTCCAGGACCTCGGCTGGCTGGACTGGGTCATCGCTCCCCAAGGCTACTCGGCCTATTACTGTGAGGGGGAGTGCTCCTTCCCACTGGACTCCTGCATGAATGCCACCAACCACGCCATCCTGCAGTCCCTGGTGCACCTGATGATGCCAGACGCAGTCCCCAAGGCGTGCTGTGCACCCACCAAGCTGAGCGCCACCTCTGTGCTCTACTATGACAGCAGCAACAATGTCATCCTGCGCAAGCACCGCAACATGGTGGTCAAGGCCTGCGGCTGCCACTGA MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQWSETVPWATRSPIGRSSALT*PRSRLGRRSQLRSSGFTRCPASTCSTGPSTSACSRWSRSSPTGSLTCSFWIFRRSELETRAGWCWMSQQPVTAGC*SVTRTWDSASMWRLRTGTAWILAWPACWVNGPHAPNSLSWSLSSGPVRVPSAPLGQ*GH*GGGSRRKATSCRRPTDSQGSLMTSTAPTAGRSAVGTSSTSASRTSAGWTGSSLPKATRPITVRGSAPSHWTPA*MPPTTPSCSPWCT**CQTQSPRRAVHPPS*APPLCSTMTAATMSSCASTATWWSRPAAAT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30916 CAP1::ZMPSTE24 ENSG00000131236.18::ENSG00000084073.10 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1314 FALSE NA FALSE NA CAP1 ENSG00000131236.18 protein_coding + + chr1:40040233-40072649:+ chr1:40040801:+ chr1:40505905-40538321:+ chr1:40506473:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40281343:+ chr1:40723713-40759852:+ chr1:40747015:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.19Mb] 20 2 20 1.11 ONLY_REF_SPLICE YES_LDAS 0.2464 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30923 ZMPSTE24::TRIT1 ENSG00000084073.10::ENSG00000043514.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1315 FALSE NA FALSE NA ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40272035:+ chr1:40723713-40759852:+ chr1:40737707:+ TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39857417:- chr1:40303782-40349183:- chr1:40323089:- chr1:40275717 chr1:39881214 NA NA chr1:40741389 chr1:40346886 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Peptidase_M48_N|41-225|2e-66^Peptidase_M48|229-472|1.7e-53^Peptidase_M48_N|368-368|0.43 IPPT-PARTIAL|~175-331|8.8e-70^ABC_tran-PARTIAL|~175-199|4^Mst1_SARAH-PARTIAL|~175-176|0.058^AAA_25|218-249|5.6^AAA|221-262|0.75^AAA_33|224-246|0.016^IPT|236-276|0.04^DUF87|241-275|0.57^AAA_22|248-267|2.7^Mst1_SARAH|253-266|0.056^AAA_18|260-260|4.9^Cytidylate_kin|260-277|3.2^AAA_16|276-292|6.7^DUF87|285-321|1.9^Mst1_SARAH|314-324|1.2^zf-C2H2_jaz|397-419|1.2e-07 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.37Mb] 10 8 10 6.15 ONLY_REF_SPLICE YES_LDAS 0.1885 GT 1.5219 AG 1.9899 ENST00000372759.4 1-769 ENST00000316891.10 175-1404 chr1|+|[0]40258272-40258394[2]|[0]40260839-40260985[2]|[0]40267786-40267872[2]|[0]40268419-40268535[2]|[0]40269975-40270127[2]|[0]40271894-40272035[0]<==>chr1|-|[2]39841744-39841913[1]|[0]39844101-39844218[0]|[2]39844531-39844640[1]|[0]39847220-39847297[1]|[0]39847548-39847660[2]|[1]39847986-39848097[1]|[0]39850119-39850261[2]|[1]39852731-39852876[0]|[2]39853970-39854068[0]|[2]39857277-39857417[0] atggggatgtgggcatcgctggacgctttgtgggagatgccggccgagaagcgtatcttcggggccgtgctgctcttttcctggacagtgtatctttgggagaccttcctagcacagcggcagagaaggatatataaaacaacaactcatgtaccaccggagttaggacagatcatggattctgaaacatttgagaaatctcgactctatcaactggataaaagcactttcagcttctggtcaggactctattcagagactgaaggcactcttattcttctctttggaggaataccttatctctggagactttctggacggttctgtggttatgctggctttggaccagaatatgagatcactcagtccctggtgtttctgctgttggctacacttttcagtgcattgactggtttgccatggagtctttataatacttttgtgatagaagaaaaacatggcttcaatcaacagactttggggttcttcatgaaagatgcaatcaagaaatttgttgtgactcagtgtattttgttgcctgtgtcttcacttctactttacattattaaaattgggggtgactatttttttatttatgcctggctgttcacattagttgtgtctctggttcttgtcacaatctatgctgattatattgcccctttatttgacaaattcacacctctgcctgagggaaagcttaaagaagaaattgaagtaatggcaaagagtattgactttcctttgacgaaggtgtatgttgtggaagGTCTATGAAGGCCTAGACATCATCACCAACAAGGTTTCTGCCCAAGAGCAGAGAATCTGCCGGCACCACATGATCAGCTTTGTGGATCCTCTTGTGACCAATTACACAGTGGTGGACTTCAGAAATAGAGCAACTGCTCTGATTGAAGATATATTTGCCCGAGACAAAATTCCTATTGTTGTGGGAGGAACCAATTATTACATTGAATCTCTGCTCTGGAAAGTTCTTGTCAATACCAAGCCCCAGGAGATGGGCACTGAGAAAGTGATTGACCGAAAAGTGGAGCTTGAAAAGGAGGATGGTCTTGTACTTCACAAACGCCTAAGCCAGGTGGACCCAGAAATGGCTGCCAAGCTGCATCCACATGACAAACGCAAAGTGGCCAGGAGCTTGCAAGTTTTTGAAGAAACAGGAATCTCTCATAGTGAATTTCTCCATCGTCAACATACGGAAGAAGGTGGTGGTCCCCTTGGAGGTCCTCTGAAGTTCTCTAACCCTTGCATCCTTTGGCTTCATGCTGACCAGGCAGTTCTAGATGAGCGCTTGGATAAGAGGGTGGATGACATGCTTGCTGCTGGGCTCTTGGAGGAACTAAGAGATTTTCACAGACGCTATAATCAGAAGAATGTTTCGGAAAATAGCCAGGACTATCAACATGGTATCTTCCAATCAATTGGCTTCAAGGAATTTCACGAGTACCTGATCACTGAGGGAAAATGCACACTGGAGACTAGTAACCAGCTTCTAAAGAAAGGTATTGAGGCTCTGAAACAAGTAACTAAGAGATATGCCCGGAAACAAAACCGATGGGTTAAAAACCGTTTTTTGAGCAGACCTGGTCCCATTGTCCCCCCTGTCTATGGCTTAGAGGTATCTGATGTCTCGAAGTGGGAAGAGTCTGTTCTTGAACCTGCTCTTGAAATCGTGCAAAGTTTCATCCAGGGCCACAAGCCTACAGCCACTCCAATAAAGATGCCATACAATGAAGCTGAGAACAAGAGAAGTTATCACCTGTGTGACCTCTGTGATCGAATCATCATTGGGGATCGCGAATGGGCAGCGCACATAAAATCCAAATCCCACTTGAACCAACTGAAGAAAAGAAGAAGATTGGACTCAGATGCTGTCAACACCATAGAAAGTCAGAGTGTTTCCCCAGACCATAACAAAGAACCTAAAGAGAAGGGATCCCCAGGGCAGAATGATCAAGAGCTGAAATGCAGCGTTTAA MGMWASLDALWEMPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGL*RPRHHHQQGFCPRAENLPAPHDQLCGSSCDQLHSGGLQK*SNCSD*RYICPRQNSYCCGRNQLLH*ISALESSCQYQAPGDGH*ESD*PKSGA*KGGWSCTSQTPKPGGPRNGCQAAST*QTQSGQELASF*RNRNLS**ISPSSTYGRRWWSPWRSSEVL*PLHPLASC*PGSSR*ALG*EGG*HACCWALGGTKRFSQTL*SEECFGK*PGLSTWYLPINWLQGISRVPDH*GKMHTGD**PASKERY*GSETSN*EICPETKPMG*KPFFEQTWSHCPPCLWLRGI*CLEVGRVCS*TCS*NRAKFHPGPQAYSHSNKDAIQ*S*EQEKLSPV*PL*SNHHWGSRMGSAHKIQIPLEPTEEKKKIGLRCCQHHRKSECFPRP*QRT*REGIPRAE*SRAEMQRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30930 ZNF684::PPIE ENSG00000117010.17::ENSG00000084072.17 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ZNF684 ENSG00000117010.17 protein_coding + + chr1:40531573-40548167:+ chr1:40533181:+ chr1:40997245-41013839:+ chr1:40998853:+ PPIE ENSG00000084072.17 protein_coding + + chr1:39692182-39763914:+ chr1:39717633:+ chr1:40157854-40229586:+ chr1:40183305:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.77Mb] 6 18 6 14.61 INCL_NON_REF_SPLICE YES_LDAS 0.2405 GT 1.9899 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30937 LDB3::BMPR1A ENSG00000122367.21::ENSG00000107779.15 COLO668 SRR8615793 SRR8639228 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LDB3 ENSG00000122367.21 protein_coding + + chr10:86666785-86736072:+ chr10:86692571:+ chr10:88426542-88495829:+ chr10:88452328:+ BMPR1A ENSG00000107779.15 protein_coding + + chr10:86756596-86932825:+ chr10:86875867:+ chr10:88516353-88692582:+ chr10:88635624:+ chr10:86693085,chr10:86693153,chr10:86693151 chr10:86863888,chr10:86863888,chr10:86863883 NA NA chr10:88452842,chr10:88452910,chr10:88452908 chr10:88623645,chr10:88623645,chr10:88623640 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BMPR1A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.02Mb];NEIGHBORS[20582] 3 7 3 7 ONLY_REF_SPLICE YES_LDAS 0.1167 GT 1.9656 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Bone morphogenetic protein receptor type-1A TKL STKR STKR1 P36894 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE bone morphogenetic protein receptor, type IA 1 Yes gastrointestinal polyps juvenile polyposis epithelial oncogene, TSG missense, nonsense, frameshift 30941 R3HDM2::ARHGAP9 ENSG00000179912.21::ENSG00000123329.20 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1320 FALSE NA FALSE NA R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57430720:- chr12:57647545-57824826:- chr12:57824503:- ARHGAP9 ENSG00000123329.20 protein_coding - - chr12:57472264-57488814:- chr12:57480834:- chr12:57866047-57882597:- chr12:57874617:- chr12:57410485,chr12:57410502 chr12:57483599,chr12:57483611 NA NA chr12:57804268,chr12:57804285 chr12:57877382,chr12:57877394 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ARHGAP9:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.04Mb];LOCAL_REARRANGEMENT:-:[41250] 29 1 29 0.78 ONLY_REF_SPLICE YES_LDAS 0.3352 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30942 NRDE2::CALM1 ENSG00000119720.18::ENSG00000198668.14 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1318 FALSE NA FALSE NA NRDE2 ENSG00000119720.18 protein_coding - - chr14:90267860-90331969:- chr14:90286354:- chr14:90734204-90798313:- chr14:90752698:- CALM1 ENSG00000198668.14 protein_coding + + chr14:90396502-90408268:+ chr14:90400065:+ chr14:90862846-90874612:+ chr14:90866409:+ chr14:90284657,chr14:90284657,chr14:90284659 chr14:90397109,chr14:90397114,chr14:90397107 NA NA chr14:90751001,chr14:90751001,chr14:90751003 chr14:90863453,chr14:90863458,chr14:90863451 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AP3D1|65-112|0.00011^TAF4|65-146|3.2e-05^IHABP4_N|67-142|0.00033^NRDE-2|78-157|0.38^TPR_19|296-310|2.4^NRDE-2|310-647|1.6e-99^TPR_14|311-331|0.14^TAF4|349-382|3.6^TPR_14|367-388|3.7^TPR_19|368-385|5.3^TPR_14|397-421|0.29^TPR_14|474-497|0.16^TPR_2|480-495|0.39^TPR_8|480-494|5.1^TPR_12|480-494|1.2^TPR_19|481-496|2.7^NRDE-2|768-790|0.44^TPR_19|778-807|0.0052^TPR_12|781-824|0.00049^TPR_14|782-808|6.3e-05^TPR_2|783-807|0.006^TPR_8|785-810|0.01^TPR_14|873-885|4.8^TPR_2|873-883|0.2^TPR_8|873-882|3.1^TPR_12|873-883|1.8^TPR_14|921-934|9^TPR_19|921-933|2.4^TPR_8|921-930|4.1^NRDE-2|984-1025|0.012^TPR_14|984-1006|0.01^TPR_2|984-997|0.073^TPR_19|985-1026|0.016^TPR_8|985-996|4.7^TPR_12|1039-1056|8.6^TPR_19|1074-1106|5.8^NRDE-2|1087-1101|0.18^TPR_14|1091-1127|0.0005^TPR_8|1098-1117|0.32 EF-hand_4|4-73|5.7e-06^EFhand_Ca_insen|4-33|1.2^DUF3349-PARTIAL|~4-60|0.014^DUF5663-PARTIAL|~4-17|0.0098^SapB_1-PARTIAL|~4-12|2.3^AIF-1|7-76|3.1e-12^ERAP1_C|7-56|0.01^EF-hand_1|12-40|2.3e-12^EF-hand_7|12-73|1.9e-20^EF-hand_6|12-41|2.5e-12^EF-hand_8|12-33|0.00016^Fe_hyd_lg_C|12-84|0.00059^DUF5580_M|13-82|0.11^PA_Ig-like|13-34|1.7^EF-hand_5|14-37|6.2e-09^EF-hand_9|15-75|2.6e-13^SPARC_Ca_bdg|16-70|0.00013^EF-hand_11|16-75|0.013^Caleosin|17-47|0.00061^dCache_2|19-66|0.037^MotA_activ|19-35|0.51^RTX_C|19-42|0.39^Dockerin_1|21-69|0.0015^SurA_N_3|21-89|0.063^Poly_export|23-47|0.14^TerB|25-92|0.0006^EF-hand_8|28-75|9.9e-12^UPF0154|28-56|8.5e-05^SurA_N_2|28-58|0.042^RNA_pol_Rpb4|29-57|0.0061^DUF3892|32-102|0.095^PA_Ig-like|40-110|0.0003^SapB_1|40-56|0.065^GIP1_N|42-64|0.14^RuvA_C|45-59|1.1^Caleosin|47-81|0.43^DUF1103|47-143|1.9e-06^EF-hand_1|48-75|2e-11^EF-hand_6|48-74|5.3e-06^DUF5132|48-58|0.028^EF-hand_5|49-73|6.1e-08^Poly_export|54-92|0.00091^DUF5580_M|68-147|5.5e-06^DUF3349|69-120|0.12^UPF0154|70-91|0.73^Dockerin_1|72-111|0.26^DUF5663|74-126|0.47^ERAP1_C|75-128|0.093^SapB_1|75-89|0.22^SurA_N_3|77-148|0.00068^RuvA_C|78-91|0.45^EFhand_Ca_insen|79-145|1.3e-07^EF-hand_8|82-110|5.3e-08^SPARC_Ca_bdg|82-143|3.2e-05^GIP1_N|82-91|6.8^EF-hand_7|83-147|1.1e-25^AIF-1|84-148|6.2e-09^EF-hand_4|84-146|1e-07^EF-hand_11|84-146|1.7e-06^EF-hand_1|85-112|9.1e-13^EF-hand_6|85-114|2.8e-13^EF-hand_5|86-110|1.1e-09^EF-hand_9|89-147|7.7e-08^dCache_2|90-140|0.0085^Caleosin|91-114|0.066^RTX_C|92-109|0.29^Dockerin_1|94-140|5.7e-05^SurA_N_2|98-145|0.0016^EF-hand_8|99-147|5.8e-18^TerB|99-147|0.011^MotA_activ|99-135|0.0018^UPF0154|100-128|0.011^DUF5132|101-119|0.068^RNA_pol_Rpb4|102-128|0.0034^RTX_C|102-140|0.0047^RuvA_C|103-129|0.027^DUF3892|106-141|0.0049^DUF3349|109-132|0.085^DUF5663|111-144|0.2^SapB_1|112-127|4.1^GIP1_N|115-136|0.014^Fe_hyd_lg_C|117-141|0.13^Caleosin|120-147|2.1^EF-hand_1|121-148|6.3e-13^Poly_export|123-140|1.1^EF-hand_6|124-147|9.5e-06^EF-hand_5|124-146|2.4e-07 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.06Mb];LOCAL_INVERSION:-:+:[64365] 28 27 28 27 ONLY_REF_SPLICE YES_LDAS 0.619 GT 1.7232 AG 1.9656 ENST00000354366.8 1-3297 ENST00000356978.9 4-450 chr14|-|[2]90286354-90286492[2]|[1]90288217-90289145[0]|[2]90290221-90290607[0]|[2]90292697-90292872[1]|[0]90298260-90298380[0]|[2]90301239-90301372[1]|[0]90302720-90303125[0]|[2]90303935-90304382[2]|[1]90312394-90312543[2]|[1]90316578-90316811[2]|[1]90318005-90318113[1]|[0]90331841-90331904[0]<==>chr14|+|[0]90400065-90400095[0]|[1]90401259-90401402[0]|[1]90403862-90403968[2]|[0]90404379-90404514[0]|[1]90404689-90404717[2] atggcgctgttcccagcctttgcggggcttagtgaggctcccgatggcgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgttggatccataacgtccctgagccaacaaactgaagcagctccagcccatgtttctgaagggttaccgctgacaaggagtcatctgaaatcagagtcttcagatgaaagtgacactaacaaaaagctcaaacaaacaagtagaaaaaagaagaaagagaaaaagaaaaaaaggaagcatcagcatcataagaaaacaaagaggaagcatgggccgtcgagtagcagcaggtctgagacagacaccgattctgaaaaggacaaaccttccagaggcgttggaggcagtaaaaaggaatctgaggaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacgggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacatcgatggagttgccattagcagtaaaactgaacctccctcatctgagcccatctcctttataccagtgaaggacttggaagatgcggctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacattggctacaaggacagggtcctccagagcaggaatcaaagcagccagacgcacagccagacagcgagagtgcggctctcaaggccaaggtggaggagtttaacaggagggtgcgggagaatcctcgggatacgcagctgtggatggcatttgttgcttttcaggacgaggtcatgaaaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagcactttgtctgctgttaaggacggcagcatcttatctcaccctgcgttgcctggcacggaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggctggccactctgagaaggccatctcattgttccaggccatggtggacttcaccttcttcaaacccgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgaacccttttgggacagtggagagccccgggctggggagaagggagcccgaggctggaaggcgtggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggatgaccaggaaataaaagataagactctgcccaggtggcagatctggcttgctgctgagcgttcccgtgaccagaggcactggcggccctggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatcccgagagacaggtgttgtttgatgatattgggcaatctttgatcagactttccagccatgatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggctttactcctccagcctcctgtctttatctggccatggatgagaacagcatctttgataatggactttatgatgaaaagcccttgacttttttcaaccctttgttttctggggctagctgtgttggccgcatggataggttgggctatcctcgctggaccaggggtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcctttattttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtcatttggtgcctgcacactaaaaacaagaagagattaaagtctcaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaacttttgcctgtggaagcagtatgcacatctggagtggttgcttggcaacacggaggatgccagaaaagtttttgacacagcacttggcatggcaggaagcagagaactgaaagactctgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccagaagtgagaagggctgccacagctcgagctgttcacatattaaccaagctgactgagagcagcccctatgggccctacactggacaggtgttggctgttcacattttgaaagcgcgaaaggcttatgagcacgcactgcaggactgtttgggtgacagctgtgtctccaatccagctcccaccgattcctgtagccgcctaattagcctggctaaatgcttcatgctcttccagtatttgaccatagggattgatgctgctgtgcagatatacgaacaggtgtttgcaaaactgaacagttctgttttcccagaaggctctggcgagggggacagtgccagctcccagagttggaccagtgttctcgaagccatcacactgatgcacacgagcctgctgagattccacatgaaagtgagtgtttacccgctggcccctctgcgagaggcactctcacaggctttaaagttgtatccaggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaaaaccaggagattttttgacacaatcaccaggtctgccaaacccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccacgccacaattcctgagaccggcttaatgcatcggatccaagccctgtttgaaaatgccatgcgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctgGCTGATCAGCTGACCGAAGAACAGATTGCTGAATTCAAGGAAGCCTTCTCCCTATTTGATAAAGATGGCGATGGCACCATCACAACAAAGGAACTTGGAACTGTCATGAGGTCACTGGGTCAGAACCCAACAGAAGCTGAATTGCAGGATATGATCAATGAAGTGGATGCTGATGGTAATGGCACCATTGACTTCCCCGAATTTTTGACTATGATGGCTAGAAAAATGAAAGATACAGATAGTGAAGAAGAAATCCGTGAGGCATTCCGAGTCTTTGACAAGGATGGCAATGGTTATATCAGTGCAGCAGAACTACGTCACGTCATGACAAACTTAGGAGAAAAACTAACAGATGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGAGACGGACAAGTCAACTATGAAGAATTCGTACAGATGATGACTGCAAAATGA MALFPAFAGLSEAPDGGSSRKELDWLSNPSFCVGSITSLSQQTEAAPAHVSEGLPLTRSHLKSESSDESDTNKKLKQTSRKKKKEKKKKRKHQHHKKTKRKHGPSSSSRSETDTDSEKDKPSRGVGGSKKESEEPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGVAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTHWLQGQGPPEQESKQPDAQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAISLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGVPSGFTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPLFSGASCVGRMDRLGYPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGSRELKDSDLCELSLLYAELEVELSPEVRRAATARAVHILTKLTESSPYGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSNPAPTDSCSRLISLAKCFMLFQYLTIGIDAAVQIYEQVFAKLNSSVFPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTITRSAKPLEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPETGLMHRIQALFENAMRSDSGSQCPLLWRMYLNFLADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30945 C1orf52::DDAH1 ENSG00000162642.14::ENSG00000153904.21 NCIH522 SRR8615798 SRR8670691 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA C1orf52 ENSG00000162642.14 protein_coding - - chr1:85249953-85259672:- chr1:85258524:- chr1:85715636-85725355:- chr1:85724207:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85256893,chr1:85256897 chr1:85412086,chr1:85412087 NA NA chr1:85722576,chr1:85722580 chr1:85877769,chr1:85877770 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4611|11-40|0.0049^MRI|16-52|0.001^DUF4660|22-127|2e-46^MRI|132-165|0.0067^DUF4660|139-157|0.72^DUF4611|149-182|0.0019^DUF4660|160-171|0.3 DDAH_eukar|12-64|2e-05^ADI|14-66|7.8e-09 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.06Mb];LOCAL_REARRANGEMENT:-:[58809] 17 14 17 11.33 ONLY_REF_SPLICE YES_LDAS 0.3188 GT 1.9086 AG 1.8062 ENST00000471115.6 1-475 ENST00000633113.1 4-558 chr1|-|[0]85258524-85258722[0]|[2]85259358-85259633[0]<==>chr1|-|[2]85321452-85321568[0]|[2]85324740-85324883[0]|[2]85350415-85350534[0]|[2]85351506-85351579[1]|[0]85358748-85358847[0] atggcagcggaggagaaggaccctctgagctattttgcggcatacgggagcagcagctcaggctcctcggacgaggaggataacatcgagccggaggagacgagtcgcagaaccccggatccggcgaagtcggcgggcggctgtaggaacaaggcggagaagcggctcccgggacctgacgagctgtttaggagcgtgactcgcccggcctttctctacaatccgctcaacaaacagatagactgggagaggcacgtcgtcaaggcgcctgaggagcctccaaaggaattcaaaatatggaagtcaaattatgtaccacctcctgagacctacaccactgagaagaagcctccgcctccagagcttgacatggcaataaaatggtctaacatatatgaggacaatggtgatgatgctccacagaatgctaagaaagctaggcttctaccagaaggggaggagacgttggaatcagGTTGACATGATGAAAGAAGCATTAGAAAAACTTCAGCTCAATATAGTAGAGATGAAAGATGAAAATGCAACTTTAGATGGCGGAGATGTTTTATTCACAGGCAGAGAATTTTTTGTGGGCCTTTCCAAAAGGACAAATCAACGAGGTGCTGAAATCTTGGCTGATACTTTTAAGGACTATGCAGTCTCCACAGTGCCAGTGGCAGATGGGTTGCATTTGAAGAGTTTCTGCAGCATGGCTGGGCCTAACCTGATCGCAATTGGGTCTAGTGAATCTGCACAGAAGGCCCTTAAGATCATGCAACAGATGAGTGACCACCGCTACGACAAACTCACTGTGCCTGATGACATAGCAGCAAACTGTATATATCTAAATATCCCCAACAAAGGGCACGTCTTGCTGCACCGAACCCCGGAAGAGTATCCAGAAAGTGCAAAGGTTTATGAGAAACTGAAGGACCATATGCTGATCCCCGTGAGCATGTCTGAACTGGAAAAGGTGGATGGGCTGCTCACCTGCTGCTCAGTTTTAATTAACAAGAAAGTAGACTCCTGA MAAEEKDPLSYFAAYGSSSSGSSDEEDNIEPEETSRRTPDPAKSAGGCRNKAEKRLPGPDELFRSVTRPAFLYNPLNKQIDWERHVVKAPEEPPKEFKIWKSNYVPPPETYTTEKKPPPPELDMAIKWSNIYEDNGDDAPQNAKKARLLPEGEETLESG*HDERSIRKTSAQYSRDER*KCNFRWRRCFIHRQRIFCGPFQKDKSTRC*NLG*YF*GLCSLHSASGRWVAFEEFLQHGWA*PDRNWV**ICTEGP*DHATDE*PPLRQTHCA**HSSKLYISKYPQQRARLAAPNPGRVSRKCKGL*ETEGPYADPREHV*TGKGGWAAHLLLSFN*QESRLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30953 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1325 TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34614760:- chr21:35885440-35987412:- chr21:35987059:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Calcipressin|76-245|1.3e-76 none ["RUNX1:ArcherDX_panel","RUNX1:FoundationOne_panel","RUNX1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.17Mb] 1325 353 1325 208.99 ONLY_REF_SPLICE YES_LDAS 13.9905 GT 1.6895 AG 1.8892 ENST00000313806.9 1-252 ENST00000675419.1 806-1443 chr21|-|[2]34614760-34615011[0]<==>chr21|-|[2]34792135-34792610[1]|[0]34799301-34799462[1] atggaggacggcgtggccggtccccagctcggggccgcggcggaggcggcggaggcggccgaggcgcgagcgcggcccggggtgacgctgcggcccttcgcgcccctctcgggggcggccgaggcggacgagggcggcggcgactggagcttcattgactgcgagatggaggaggtggacctgcaggacctgcccagcgccaccatcgcctgtcacctggacccgcgcgtgttcgtggacggcctgtgccggATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAACGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGCATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGGCATGTCGGCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGGCCCGTTCCAAGCCAGCTCGCCCTCCTACCACCTGTACTACGGCGCCTCGGCCGGCTCCTACCAGTTCTCCATGGTGGGCGGCGAGCGCTCGCCGCCGCGCATCCTGCCGCCCTGCACCAACGCCTCCACCGGCTCCGCGCTGCTCAACCCCAGCCTCCCGAACCAGAGCGACGTGGTGGAGGCCGAGGGCAGCCACAGCAACTCCCCCACCAACATGGCGCCCTCCGCGCGCCTGGAGGAGGCCGTGTGGAGGCCCTACTGA MEDGVAGPQLGAAAEAAEAAEARARPGVTLRPFAPLSGAAEADEGGGDWSFIDCEMEEVDLQDLPSATIACHLDPRVFVDGLCRIQGRSNHPHRGPTISPTNTWDPLPLLLCTQQRPFHLDVPAA*QPSLQNFPVDSQRHPT*QRSATRASSPRCPPSPTPACTIQAPSPTPRRRSPRASASACRPWARPRATTPTCRRPTPARRKRREARSKPARPPTTCTTAPRPAPTSSPWWAASARRRASCRPAPTPPPAPRCSTPASRTRATWWRPRAATATPPPTWRPPRAWRRPCGGPT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 TRUE|TRUE|FALSE,TRUE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 TRUE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 30954 RCAN1::RUNX1 ENSG00000159200.18::ENSG00000159216.19 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1326 TRUE 2348 TRUE 907 RCAN1 ENSG00000159200.18 protein_coding - - chr21:34513142-34615113:- chr21:34526663:- chr21:35885440-35987412:- chr21:35898961:- RUNX1 ENSG00000159216.19 protein_coding - - chr21:34787801-36004667:- chr21:34799462:- chr21:36160098-37376965:- chr21:36171759:- chr21:34524077,chr21:34524082 chr21:34809987,chr21:34809989 NA NA chr21:35896375,chr21:35896380 chr21:36182284,chr21:36182286 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Calcipressin-PARTIAL|22-87~|7.4e-76 none ["RUNX1:ArcherDX_panel","RUNX1:FoundationOne_panel","RUNX1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.17Mb] 600 666 600 457.01 ONLY_REF_SPLICE YES_LDAS 9.6403 GT 1.6895 AG 1.8892 ENST00000381132.6 1-87 ENST00000675419.1 806-1443 chr21|-|[2]34526663-34526749[0]<==>chr21|-|[2]34792135-34792610[1]|[0]34799301-34799462[1] atgcattttagaaactttaactacagttttagctccctgattgcctgtgtggcaaacagtgatatcttcagcgaaagtgaaaccaggATACAAGGCAGATCCAACCATCCCCACCGTGGTCCTACGATCAGTCCTACCAATACCTGGGATCCATTGCCTCTCCTTCTGTGCACCCAGCAACGCCCATTTCACCTGGACGTGCCAGCGGCATGACAACCCTCTCTGCAGAACTTTCCAGTCGACTCTCAACGGCACCCGACCTGACAGCGTTCAGCGACCCGCGCCAGTTCCCCGCGCTGCCCTCCATCTCCGACCCCCGCATGCACTATCCAGGCGCCTTCACCTACTCCCCGACGCCGGTCACCTCGGGCATCGGCATCGGCATGTCGGCCATGGGCTCGGCCACGCGCTACCACACCTACCTGCCGCCGCCCTACCCCGGCTCGTCGCAAGCGCAGGGAGGCCCGTTCCAAGCCAGCTCGCCCTCCTACCACCTGTACTACGGCGCCTCGGCCGGCTCCTACCAGTTCTCCATGGTGGGCGGCGAGCGCTCGCCGCCGCGCATCCTGCCGCCCTGCACCAACGCCTCCACCGGCTCCGCGCTGCTCAACCCCAGCCTCCCGAACCAGAGCGACGTGGTGGAGGCCGAGGGCAGCCACAGCAACTCCCCCACCAACATGGCGCCCTCCGCGCGCCTGGAGGAGGCCGTGTGGAGGCCCTACTGA MHFRNFNYSFSSLIACVANSDIFSESETRIQGRSNHPHRGPTISPTNTWDPLPLLLCTQQRPFHLDVPAA*QPSLQNFPVDSQRHPT*QRSATRASSPRCPPSPTPACTIQAPSPTPRRRSPRASASACRPWARPRATTPTCRRPTPARRKRREARSKPARPPTTCTTAPRPAPTSSPWWAASARRRASCRPAPTPPPAPRCSTPASRTRATWWRPRAATATPPPTWRPPRAWRRPCGGPT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Uterine Carcinosarcoma BREAST,UTERUS no_match 35987059|35987059|35986577,35987059 FALSE|FALSE|FALSE,FALSE 36171759|36164907|36171759,36253010 TRUE|FALSE|TRUE,FALSE PARTIALLY,YES Out-of-frame,In-frame TRUE Breast BREAST no_match 34614760 FALSE 34799462 TRUE FALSE NA NA NA NA NA NA NA NA NA TRUE runt-related transcription factor 1 (AML1) 1 AML, pre B-ALL, T-ALL leukaemia_lymphoma oncogene, TSG, fusion translocation 30955 NKD1::ADCY7 ENSG00000140807.7::ENSG00000121281.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NKD1 ENSG00000140807.7 protein_coding + + chr16:50548396-50649249:+ chr16:50633349:+ chr16:50582307-50683160:+ chr16:50667260:+ ADCY7 ENSG00000121281.13 protein_coding + + chr16:50246137-50318135:+ chr16:50300719:+ chr16:50280048-50352046:+ chr16:50334630:+ chr16:50638330,chr16:50638330 chr16:50300066,chr16:50300063 NA NA chr16:50672241,chr16:50672241 chr16:50333977,chr16:50333974 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EF-hand_8|116-159|4e-05^EF-hand_7|138-171|8e-07^EF-hand_1|138-161|1.9e-06^EF-hand_6|140-161|2.5e-06 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.23Mb] 398 140 398 140 INCL_NON_REF_SPLICE YES_LDAS 4.9067 GT 1.6895 AG 1.6402 ENST00000268459.6 1-981 ENST00000394697.7 1081-3243 chr16|+|[0]50548554-50548578[0]|[1]50548717-50548749[0]|[1]50549422-50549555[2]|[0]50608294-50608360[0]|[1]50621602-50621708[2]|[0]50625485-50625580[2]|[0]50630186-50630333[0]|[1]50630826-50630910[1]|[2]50632281-50632408[0]|[1]50633192-50633349[2]<==>chr16|+|[0]50300719-50300873[1]|[2]50301082-50301214[2]|[0]50304360-50304551[2]|[0]50304925-50304959[1]|[2]50305503-50305586[1]|[2]50305777-50305849[2]|[0]50307050-50307147[1]|[2]50308327-50308411[2]|[0]50308667-50308792[2]|[0]50309548-50309646[2]|[0]50310687-50310880[1]|[2]50311693-50311786[2]|[0]50312036-50312191[2]|[0]50312890-50313036[2]|[0]50313958-50314062[2]|[0]50314292-50314406[0]|[1]50315014-50315138[2]|[0]50315359-50315505[2] atggggaaacttcactccaagccggccgccgtgtgcaagcgcagggagagcccggaaggtgacagcttcgccgtgagcgctgcctgggctcggaagggcatcgaggagtggatcgggagacagcgctgcccgggcggtgtctcgggaccccgacagctgcggttggcgggcaccataggccgaagcacccgggagctcgtgggcgacgtgttgagagacacgctcagcgaggaagaggaggacgactttcggctggaagtggccctgcctcctgagaagactgacgggctgggcagcggagatgagaagaagatggagagagtgagcgaaccctgcccaggctccaagaagcagctgaagtttgaagagctccagtgcgacgtgtccatggaggaggacagccggcaggagtggaccttcaccctgtatgactttgacaacaacggcaaggtcacccgagaggacatcaccagcttgctgcacaccatctatgaggtggtggactcctctgtcaaccactccccaacatccagcaagatgctgcgggtaaagctcaccgtggcccccgatggcagccagagcaagaggagcgtccttgtcaatcaggctgacctgcagagcgcaaggccccgagcagagaccaagcccactgaggacctgcggagctgggagaagaagcagcgagccccgctcaggttccagggtgacagccgcctggagcagtctggctgctaccaccattgcgtagatgagaacatcgagaggagaaaccactacttagatctcgccgggatagaaaactacacgtcccaatttgggcctggctccccttccgtggcccagaagtcagaactgcccccccgcacctccaatcccactcgatctcgctcccatgagccggaagccatccacatcccacaccgaaagccccaaggcgtggacccggcctccttccacttccttgacaccccaatcgccaagGTGCGGGAGGCCACGGGCGTGGACATCAACATGCGTGTGGGCATACACTCGGGGAATGTGCTGTGCGGGGTCATCGGGCTGCGCAAGTGGCAGTATGACGTGTGGTCCCACGACGTGTCCCTGGCCAACCGGATGGAGGCAGCCGGAGTACCCGGCCGGGTGCACATCACGGAGGCCACGCTAAAGCACCTGGACAAGGCGTACGAGGTGGAGGATGGGCACGGGCAGCAGCGGGACCCCTACCTCAAGGAGATGAACATCCGCACCTACCTGGTCATCGACCCCCGGAGCCAGCAGCCACCCCCGCCCAGCCAACACCTCCCCAGGCCCAAGGGGGACGCGGCCCTGAAGATGCGGGCGTCAGTGCGCATGACCCGGTACCTCGAGTCCTGGGGGGCGGCACGGCCCTTTGCACATCTCAACCACCGTGAGAGCGTGAGCAGTGGTGAGACCCACGTCCCCAACGGGCGGAGGCCTAAGAGCGTTCCCCAGCGCCACCGCCGGACCCCAGACAGAAGCATGTCCCCCAAGGGGCGGTCGGAGGATGACTCGTACGATGACGAGATGCTGTCAGCCATTGAGGGGCTCAGCTCCACGAGGCCCTGCTGCTCCAAGTCCGATGACTTCTACACCTTTGGGTCCATCTTCCTGGAGAAGGGCTTTGAGCGCGAGTACCGCCTGGCACCCATCCCCCGGGCCCGCCACGACTTTGCCTGCGCCAGCCTGATCTTCGTCTGCATCCTGCTCGTCCATGTCCTGCTCATGCCCAGGACGGCGGCACTGGGTGTGTCCTTCGGGCTGGTGGCCTGTGTACTGGGGCTGGTGCTGGGCCTGTGCTTTGCCACCAAGTTCTCGAGGTGCTGCCCAGCTCGGGGGACGCTCTGCACTATCTCTGAGAGGGTGGAGACACAGCCCCTGCTGAGGCTGACCCTGGCCGTCCTGACCATCGGCAGCCTGCTCACTGTGGCCATCATCAACCTGCCCCTGATGCCTTTCCAAGTTCCAGAGCTGCCTGTTGGCAATGAGACAGGCCTACTGGCCGCGAGCAGCAAGACAAGAGCCCTGTGTGAGCCCCTCCCGTACTACACCTGCAGCTGTGTCCTGGGCTTCATCGCCTGCTCGGTCTTCCTGAGGATGAGCCTGGAGCCAAAGGTTGTGCTGCTGACAGTGGCCCTGGTGGCCTACCTGGTGCTCTTCAACCTCTCCCCATGCTGGCAGTGGGACTGCTGCGGCCAAGGCCTGGGCAACCTCACCAAGCCCAACGGCACCACCAGTGGCACCCCTAGCTGTTCCTGGAAGGACCTGAAGACCATGACCAATTTCTACCTGGTCCTGTTCTACATCACCCTGCTTACACTCTCCAGACAGATTGACTATTACTGCCGCTTGGACTGCCTATGGAAGAAGAAGTTCAAGAAGGAGCACGAGGAGTTTGAGACCATGGAGAACGTGAACCGCCTTCTTCTGGAGAACGTCCTGCCAGCCCACGTGGCTGCCCACTTTATCGGTGACAAGTTAAACGAGGACTGGTACCATCAGTCCTATGACTGCGTCTGTGTCATGTTTGCCTCCGTGCCGGACTTCAAAGTGTTCTACACAGAGTGCGATGTCAACAAAGAAGGGCTGGAGTGCCTACGCCTGCTCAATGAGATCATTGCCGACTTCGACGAGCTCCTACTGAAGCCCAAGTTCAGCGGCGTGGAGAAGATCAAGACCATCGGCAGCACGTACATGGCAGCTGCAGGGCTCAGCGTCGCCTCAGGGCACGAGAACCAGGAGCTGGAGCGGCAGCATGCCCACATTGGTGTCATGGTGGAGTTCAGCATCGCCCTGATGAGTAAGCTGGACGGCATCAACAGGCACTCCTTCAACTCCTTCCGCCTCCGCGTCGGCATAAACCATGGGCCTGTGATTGCTGGAGTGATTGGGGCCCGAAAACCTCAGTATGACATCTGGGGAAACACTGTCAATGTGGCCAGCCGAATGGAAAGCACTGGAGAACTTGGGAAAATCCAGGTTACCGAGGAGACCTGCACCATCCTCCAGGGCCTCGGGTACTCTTGTGAATGCCGTGGCCTGATCAACGTCAAAGGCAAAGGCGAGCTGAGGACTTACTTTGTCTGTACGGACACTGCCAAGTTTCAGGGGCTGGGGCTGAACTGA MGKLHSKPAAVCKRRESPEGDSFAVSAAWARKGIEEWIGRQRCPGGVSGPRQLRLAGTIGRSTRELVGDVLRDTLSEEEEDDFRLEVALPPEKTDGLGSGDEKKMERVSEPCPGSKKQLKFEELQCDVSMEEDSRQEWTFTLYDFDNNGKVTREDITSLLHTIYEVVDSSVNHSPTSSKMLRVKLTVAPDGSQSKRSVLVNQADLQSARPRAETKPTEDLRSWEKKQRAPLRFQGDSRLEQSGCYHHCVDENIERRNHYLDLAGIENYTSQFGPGSPSVAQKSELPPRTSNPTRSRSHEPEAIHIPHRKPQGVDPASFHFLDTPIAKVREATGVDINMRVGIHSGNVLCGVIGLRKWQYDVWSHDVSLANRMEAAGVPGRVHITEATLKHLDKAYEVEDGHGQQRDPYLKEMNIRTYLVIDPRSQQPPPPSQHLPRPKGDAALKMRASVRMTRYLESWGAARPFAHLNHRESVSSGETHVPNGRRPKSVPQRHRRTPDRSMSPKGRSEDDSYDDEMLSAIEGLSSTRPCCSKSDDFYTFGSIFLEKGFEREYRLAPIPRARHDFACASLIFVCILLVHVLLMPRTAALGVSFGLVACVLGLVLGLCFATKFSRCCPARGTLCTISERVETQPLLRLTLAVLTIGSLLTVAIINLPLMPFQVPELPVGNETGLLAASSKTRALCEPLPYYTCSCVLGFIACSVFLRMSLEPKVVLLTVALVAYLVLFNLSPCWQWDCCGQGLGNLTKPNGTTSGTPSCSWKDLKTMTNFYLVLFYITLLTLSRQIDYYCRLDCLWKKKFKKEHEEFETMENVNRLLLENVLPAHVAAHFIGDKLNEDWYHQSYDCVCVMFASVPDFKVFYTECDVNKEGLECLRLLNEIIADFDELLLKPKFSGVEKIKTIGSTYMAAAGLSVASGHENQELERQHAHIGVMVEFSIALMSKLDGINRHSFNSFRLRVGINHGPVIAGVIGARKPQYDIWGNTVNVASRMESTGELGKIQVTEETCTILQGLGYSCECRGLINVKGKGELRTYFVCTDTAKFQGLGLN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 50583466|50583466|50583466 FALSE|FALSE|FALSE 50321823|50326587|50325647 FALSE|FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30957 ZNF252P::ATAD2 ENSG00000291080.1::ENSG00000156802.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1328 FALSE NA FALSE NA ZNF252P ENSG00000291080.1 lncRNA - - chr8:144973589-145002912:- chr8:145002817:- chr8:146198975-146228298:- chr8:146228203:- ATAD2 ENSG00000156802.13 protein_coding - - chr8:123319850-123416350:- chr8:123339446:- chr8:124332090-124428590:- chr8:124351686:- chr8:145000354,chr8:145000356 chr8:123342105,chr8:123342104 NA NA chr8:146225740,chr8:146225742 chr8:124354345,chr8:124354344 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr8:21.56Mb] 89 0 89 0 ONLY_REF_SPLICE YES_LDAS 0.8117 GT 1.8323 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30960 SUPV3L1::VPS26A ENSG00000156502.14::ENSG00000122958.15 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1327 FALSE NA FALSE NA SUPV3L1 ENSG00000156502.14 protein_coding + + chr10:69180234-69209099:+ chr10:69207941:+ chr10:70939990-70968855:+ chr10:70967697:+ VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69162406:+ chr10:70883268-70934168:+ chr10:70922162:+ chr10:69208909,chr10:69208910 chr10:69159393,chr10:69159391 NA NA chr10:70968665,chr10:70968666 chr10:70919149,chr10:70919147 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Suv3_N|62-179|2.4e-51^DEAD|198-307|2.1e-05^Helicase_C|364-474|1.4e-15^L27_2|462-501|7.6e-05^Suv3_C_1|558-598|3e-21^Suv3_N|621-669|2.8^SUV3_C|625-670|4.5e-19^Dsc3_C|724-775|0.00013 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019"];INTRACHROMOSOMAL[chr10:0.01Mb];LOCAL_REARRANGEMENT:+:[7371] 59 46 59 46 ONLY_REF_SPLICE YES_LDAS 0.9576 GT 1.8892 AG 1.7819 ENST00000359655.9 1-1925 ENST00000373382.5 552-984 chr10|+|[0]69180292-69180562[0]|[1]69185987-69186064[0]|[1]69186443-69186550[0]|[1]69187642-69187756[1]|[2]69189267-69189435[2]|[0]69191655-69191766[0]|[1]69195188-69195265[0]|[1]69196992-69197083[2]|[0]69198372-69198552[0]|[1]69199104-69199197[1]|[2]69200280-69200499[2]|[0]69202439-69202519[2]|[0]69202867-69203043[2]|[0]69207793-69207941[1]<==>chr10|+|[2]69162406-69162512[0]|[1]69166042-69166110[0]|[1]69168489-69168631[2]|[0]69171156-69171269[2] atgtccttctcccgtgccctattgtgggctcggctcccggcggggcgccaggctggccaccgggcagccatctgctctgcccttcgtccccactttgggccctttcccggggttctggggcaagtttctgtccttgccaccgcctcctcctctgcctccggtggctccaaaataccaaacacgtccttgttcgtgcccctgactgtgaaacctcagggccccagcgccgacggcgacgtcggggccgagctaacccggcctctggacaagaatgaagtaaagaaggtcttagacaaattttacaagaggaaagaaattcagaaactgggtgctgattatggacttgatgctcgtctcttccaccaagctttcataagctttagaaattatattatgcagtctcattccctggatgtggacattcacattgttttgaatgatatttgcttcggtgcagctcatgcggatgatttattcccatttttcttgagacatgccaaacaaatatttcctgtgttggactgtaaggatgatctacgtaaaatcagtgacttaagaataccacctaactggtacccagatgctagagccatgcagcggaagataatatttcattcaggccccacaaacagtggaaagacttatcacgcaatccagaaatacttctcagcaaagtctggagtgtattgtggccctctaaaattactggcacatgagatcttcgaaaagagtaatgctgctggtgtgccatgtgacttggtgacaggtgaagagcgtgtgacagttcagccaaatgggaaacaggcttcacatgtttcttgtacagttgagatgtgcagtgttacaactccttatgaagtggctgtaattgatgaaattcaaatgattagagatccagccagaggatgggcctggaccagagcacttctaggactgtgtgctgaagaggttcatttgtgtggagaacctgctgctattgacctggtgatggagcttatgtacacaacgggggaggaagtggaggttcgagactataagaggcttacccccatttctgtgctggaccatgcactagaatctttagataaccttcggcctggggactgcattgtctgttttagcaagaatgatatttattctgtgagtcggcagattgaaattcggggattagaatcagctgttatatatggcagtctcccacctgggaccaaacttgctcaagcaaaaaagtttaatgatcccaatgacccatgcaaaatcttggttgctacagatgcaattggcatgggacttaatttgagcataaggagaattattttttactcccttataaagcccagtatcaatgaaaagggagagagagaactagaaccaatcacaacctctcaagccctgcagattgctggcagagctggcagattcagctcacggtttaaagaaggagaggttacaacaatgaatcatgaagatctcagtttattaaaggaaattttgaagaggcctgtggatcctataagggcagctggtcttcatccaactgctgagcagattgaaatgtttgcctaccatctccctgatgcaacactgtccaatctcattgatatttttgtagacttttcacaagttgatgggcagtattttgtctgcaatatggatgattttaaattttctgcagagttgatccagcatattccactaagtctgcgagtgaggtatgttttctgcacagctcctatcaacaagaagcagccttttgtgtgttcttcactgttacagtttgccaggcagtatagcaggaatgagcccctgacctttgcatggttacgccgatacatcaaatggcctttacttccacctaagaatattaaagacctcatggatcttgaagctgtccacgatgtcttggatctttacttgtggctaagGTATCATTTAAAGGATGTGATTGTTGGAAAAATTTACTTCTTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCTGATCAAAAAAGAGATCACAGGAATTGGACCCAGTACCACAACAGAAACAGAAACAATCGCCAAATATGAAATAATGGATGGTGCACCAGTAAAAGGTGAATCAATTCCAATAAGGCTATTTTTAGCAGGATATGACCCAACTCCAACAATGAGAGATGTGAACAAAAAATTTTCAGTAAGGTACTTTTTGAATTTAGTGCTTGTTGATGAGGAAGACCGGAGGTACTTCAAACAGCAGGAGATAATTTTATGGAGAAAAGCTCCTGAAAAACTGAGGAAACAGAGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACAGGCATCTGCCGAACAGCCTGAAATGTGA MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPNTSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLRYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEKLRKQRTNFHQRFESPESQASAEQPEM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 70962799 FALSE 70915568 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30961 PAK1::TENM4 ENSG00000149269.10::ENSG00000149256.16 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1330 FALSE NA FALSE NA PAK1 ENSG00000149269.10 protein_coding - - chr11:77322017-77474635:- chr11:77473552:- chr11:77033062-77185680:- chr11:77184597:- TENM4 ENSG00000149256.16 protein_coding - - chr11:78652829-79441030:- chr11:78903523:- chr11:78363874-79152074:- chr11:78614568:- chr11:77433918,chr11:77433921 chr11:78918572,chr11:78918572 NA NA chr11:77144963,chr11:77144966 chr11:78629617,chr11:78629617 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PAK1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr11:1.18Mb] 48 12 48 12 ONLY_REF_SPLICE YES_LDAS 0.5472 GT 1.4566 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase PAK 1 STE STE20 PAKA Q13153 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30962 ATRX::MAGT1 ENSG00000085224.23::ENSG00000102158.22 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1329 FALSE NA FALSE NA ATRX ENSG00000085224.23 protein_coding - - chrX:77504880-77786233:- chrX:77652114:- chrX:76760358-77041719:- chrX:76907604:- MAGT1 ENSG00000102158.22 protein_coding - - chrX:77825747-77899271:- chrX:77830895:- chrX:77081244-77154768:- chrX:77086392:- chrX:77636989,chrX:77636999 chrX:77843042,chrX:77843044 NA NA chrX:76892480,chrX:76892490 chrX:77098539,chrX:77098541 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ADD_ATRX|158-213|1.1e-33^SNF2-rel_dom|1563-1888|6.2e-91^Helicase_C|1620-1674|2.3^Helicase_C|2020-2155|1.5e-19 none ["ATRX:FoundationOne_panel","ATRX:Oncogene","ATRX:ArcherDX_panel"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023"];INTRACHROMOSOMAL[chrX:0.04Mb];LOCAL_REARRANGEMENT:-:[40095] 47 12 47 10.64 ONLY_REF_SPLICE YES_LDAS 0.5257 GT 1.3996 AG 1.7056 ENST00000373344.11 1-4557 ENST00000691993.1 998-1104 chrX|-|[2]77652114-77652353[0]|[2]77654098-77654200[2]|[1]77656560-77656653[1]|[0]77663382-77663558[1]|[0]77664645-77664778[2]|[1]77676226-77676298[1]|[0]77681520-77684593[2]|[1]77684939-77685006[0]|[2]77688818-77688927[1]|[0]77693824-77693937[1]|[0]77696577-77696704[2]|[1]77697583-77697635[0]|[2]77698574-77698629[1]|[0]77717131-77717243[2]|[1]77785982-77786001[0]<==>chrX|-|[2]77829220-77829235[2]|[1]77830805-77830895[1] atgaccgctgagcccatgagtgaaagcaagttgaatacattggtgcagaagcttcatgacttccttgcacactcatcagaagaatctgaagaaacaagttctcctccacgacttgcaatgaatcaaaacacagataaaatcagtggttctggaagtaactctgatatgatggaaaacagcaaggaagagggaactagctcttcagaaaaatccaagtcttcaggatcgtcacgatcaaagaggaaaccttcaattgtaacaaagtatgtagaatcagatgatgaaaaacctttggatgatgaaactgtaaatgaagatgcgtctaatgaaaattcagaaaatgatattactatgcagagcttgccaaaaggtacagtgattgtacagccagagccagtgctgaatgaagacaaagatgattttaaagggcctgaatttagaagcagaagtaaaatgaaaactgaaaatctcaaaaaacgcggagaagatgggcttcatgggattgtgagctgcactgcttgtggacaacaggtcaatcattttcaaaaagattccatttatagacacccttcattgcaagttcttatttgtaagaattgctttaagtattacatgagtgatgatattagccgtgactcagatggaatggatgaacaatgtaggtggtgtgcggaaggtggaaacttgatttgttgtgacttttgccataatgctttctgcaagaaatgcattctacgcaaccttggtcgaaaggagttgtccacaataatggatgaaaacaaccaatggtattgctacatttgtcacccagagcctttgttggacttggtcactgcatgtaacagcgtatttgagaatttagaacagttgttgcagcaaaataagaagaagataaaagttgacagtgaaaagagtaataaagtatatgaacatacatccagattttctccaaagaagactagttcaaattgtaatggagaagaaaagaaattagatgattcctgttctggctctgtaacctactcttattccgcactaattgtgcccaaagagatgattaagaaggcaaaaaaactgattgagaccacagccaacatgaactccagttatgttaaatttttaaagcaggcaacagataattcagaaatcagttctgctacaaaattacgtcagcttaaggcttttaagtctgtgttggctgatattaagaaggctcatcttgcattggaagaagacttaaattccgagtttcgagcgatggatgctgtaaacaaagagaaaaataccaaagagcataaagtcatagatgctaagtttgaaacaaaagcacgaaaaggagaaaaaccttgtgctttggaaaagaaggatatttcaaagtcagaagctaaactttcaagaaaacaggtagatagtgagcacatgcatcagaatgttccaacagaggaacaaagaacaaataaaagtaccggtggtgaacataagaaatctgatagaaaagaagaacctcaatatgaacctgccaacacttctgaagatttagacatggatattgtgtctgttccttcctcagttccagaagacatttttgagaatcttgagactgctatggaagttcagagttcagttgatcatcaaggggatggcagcagtggaactgaacaagaagtggagagttcatctgtaaaattaaatatttcttcaaaagacaacagaggaggtattaaatcaaaaactacagctaaagtaacaaaagaattatatgttaaactcactcctgtttccctttctaattccccaattaaaggtgctgattgtcaggaagttccacaagataaagatggctataaaagttgtggtctgaaccccaagttagagaaatgtggacttggacaggaaaacagtgataatgagcatttggttgaaaatgaagtttcattacttttagaggaatctgatcttcgaagatccccacgtgtaaagactacacccttgaggcgaccgacagaaactaaccctgtaacatctaattcagatgaagaatgtaatgaaacagttaaggagaaacaaaaactatcagttccagtgagaaaaaaggataagcgtaattcttctgacagtgctatagataatcctaagcctaataaattgccaaaatctaagcaatcagagactgtggatcaaaattcagattctgatgaaatgctagcaatcctcaaagaggtgagcaggatgagtcacagttcttcttcagatactgatattaatgaaattcatacaaaccataagactttgtatgatttaaagactcaggcggggaaagatgataaaggaaaaaggaaacgaaaaagttctacatctggctcagattttgatactaaaaagggcaaatcagctaagagctctataatttctaaaaagaaacgacaaacccagtctgagtcttctaattatgactcagaattagaaaaagagataaagagcatgagtaaaattggtgctgccagaaccaccaaaaaaagaattccaaatacaaaagattttgactcttctgaagatgagaaacacagcaaaaaaggaatggataatcaagggcacaaaaatttgaagacctcacaagaaggatcatctgatgatgctgaaagaaaacaagagagagagactttctcttcagcagaaggcacagttgataaagacacgaccatcatggaattaagagatcgacttcctaagaagcagcaagcaagtgcttccactgatggtgtcgataagctttctgggaaagaggagagttttacttctttggaagttagaaaagttgctgaaactaaagaaaagagcaagcatctcaaaaccaaaacatgtaaaaaagtacaggatggcttatctgatattgcagagaaattcctaaagaaagaccagagcgatgaaacttctgaagatgataaaaagcagagcaaaaagggaactgaagaaaaaaagaaaccttcagactttaagaaaaaagtaattaaaatggaacaacagtatgaatcttcatctgatggcactgaaaagttacctgagcgagaagaaatttgtcattttcctaagggcataaaacaaattaagaatggaacaactgatggagaaaagaaaagtaaaaaaataagagataaaacttctaaaaagaaggatgaattatctgattatgctgagaagtcaacagggaaaggagatagttgtgactcttcagaggataaaaagagtaagaatggagcatatggtagagagaagaaaaggtgcaagttgcttggaaagagttcaaggaagagacaagattgttcatcatctgatactgagaaatattccatgaaagaagatggttgtaactcttctgataagagactgaaaagaatagaattgagggaaagaagaaatttaagttcaaagagaaatactaaggaaatacaaagtggctcatcatcatctgatgctgaggaaagttctgaagataataaaaagaagaagcaaagaacttcatctaaaaagaaggcagtcattgtcaaggagaaaaagagaaactccctaagaacaagcactaaaaggaagcaagctgacattacatcctcatcttcttctgatatagaagatgatgatcagaattctataggtgagggaagcagcgatgaacagaaaattaagcctgtgactgaaaatttagtgctgtcttcacatactggattttgccaatcttcaggagatgaagccttatctaaatcagtgcctgtcacagtggatgatgatgatgacgacaatgatcctgagaatagaattgccaagaagatgcttttagaagaaattaaagccaatctttcctctgatgaggatggatcttcagatgatgagccagaagaagggaaaaaaagaactggaaaacaaaatgaagaaaacccaggagatgaggaagcaaaaaatcaagtcaattctgaatcagattcagattctgaagaatctaagaagccaagatacagacataggcttttgcggcacaaattgactgtgagtgacggagaatctggagaagaaaaaaagacaaagcctaaagagcataaagaagtcaaaggcagaaacagaagaaaggtgagcagtgaagattcagaagattctgattttcaggaatcaggagttagtgaagaagttagtgaatccgaagatgaacagcggcccagaacaaggtctgcaaagaaagcagagttggaagaaaatcagcggagctataaacagaaaaagaaaaggcgacgtattaaggttcaagaagattcatccagtgaaaacaagagtaattctgaggaagaagaggaggaaaaagaagaggaggaggaagaggaggaggaggaggaagaggaggaggaagatgaaaatgatgattccaagtctcctggaaaaggcagaaagaaaattcggaagattcttaaagatgataaactgagaacagaaacacaaaatgctcttaaggaagaggaagagagacgaaaacgtattgctgagagggagcgtgagcgagaaaaattgagagagTAATGTGTGTGGCTGGTATTGGACTTGTTGTATTATTCTTCAGTTGGATGCTCTCTATTTTTAGATCTAAATATCATGGCTACCCATACAGCTTTCTGATGAGTTAA MTAEPMSESKLNTLVQKLHDFLAHSSEESEETSSPPRLAMNQNTDKISGSGSNSDMMENSKEEGTSSSEKSKSSGSSRSKRKPSIVTKYVESDDEKPLDDETVNEDASNENSENDITMQSLPKGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLKKRGEDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENLEQLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSNCNGEEKKLDDSCSGSVTYSYSALIVPKEMIKKAKKLIETTANMNSSYVKFLKQATDNSEISSATKLRQLKAFKSVLADIKKAHLALEEDLNSEFRAMDAVNKEKNTKEHKVIDAKFETKARKGEKPCALEKKDISKSEAKLSRKQVDSEHMHQNVPTEEQRTNKSTGGEHKKSDRKEEPQYEPANTSEDLDMDIVSVPSSVPEDIFENLETAMEVQSSVDHQGDGSSGTEQEVESSSVKLNISSKDNRGGIKSKTTAKVTKELYVKLTPVSLSNSPIKGADCQEVPQDKDGYKSCGLNPKLEKCGLGQENSDNEHLVENEVSLLLEESDLRRSPRVKTTPLRRPTETNPVTSNSDEECNETVKEKQKLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSETVDQNSDSDEMLAILKEVSRMSHSSSSDTDINEIHTNHKTLYDLKTQAGKDDKGKRKRKSSTSGSDFDTKKGKSAKSSIISKKKRQTQSESSNYDSELEKEIKSMSKIGAARTTKKRIPNTKDFDSSEDEKHSKKGMDNQGHKNLKTSQEGSSDDAERKQERETFSSAEGTVDKDTTIMELRDRLPKKQQASASTDGVDKLSGKEESFTSLEVRKVAETKEKSKHLKTKTCKKVQDGLSDIAEKFLKKDQSDETSEDDKKQSKKGTEEKKKPSDFKKKVIKMEQQYESSSDGTEKLPEREEICHFPKGIKQIKNGTTDGEKKSKKIRDKTSKKKDELSDYAEKSTGKGDSCDSSEDKKSKNGAYGREKKRCKLLGKSSRKRQDCSSSDTEKYSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKPVTENLVLSSHTGFCQSSGDEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLRE*CVWLVLDLLYYSSVGCSLFLDLNIMATHTAF**V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin,Bladder no_match TRUE Skin Cutaneous Melanoma SKIN no_match 76972608 FALSE 77112994 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA TRUE alpha thalassemia/mental retardation syndrome X-linked 1 Yes pancreatic neuroendocrine tumours, paediatric GBM epithelial TSG missense, frameshift, nonsense FALSE NA NA NA NA NA NA NA NA NA 30965 DOK6::CCDC102B ENSG00000206052.11::ENSG00000150636.17 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1332 FALSE NA FALSE NA DOK6 ENSG00000206052.11 protein_coding + + chr18:69400888-69849087:+ chr18:69401310:+ chr18:67068124-67516323:+ chr18:67068546:+ CCDC102B ENSG00000150636.17 protein_coding + + chr18:68715209-69055189:+ chr18:68874669:+ chr18:66382446-66722426:+ chr18:66541906:+ chr18:69469455 chr18:68863295 NA NA chr18:67136691 chr18:66530532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PH-PARTIAL|9-66~|1.6e-09 none ["Klijn_CellLines","DepMap2023"];INTRACHROMOSOMAL[chr18:0.35Mb] 24 8 24 8 ONLY_REF_SPLICE YES_LDAS 0.2919 GT 1.7968 AG 1.5546 ENST00000382713.10 1-66 ENST00000360242.9 937-1542 chr18|+|[0]69401245-69401310[2]<==>chr18|+|[0]68874669-68874785[2]|[0]68897219-68897428[2]|[0]69010934-69011104[2]|[0]69054030-69054137[2] atggcctccaactttaacgacatagtcaagcagggctacgtgaaaatccgcagcaggaagcttgggTTTGACATTCTTCTTGGTCAACATAATGATGAAATGCAAGAACTGTCAGGCAATATAAAGGAAGAATCCAAATCTCAAAACAGCAAAGACAGAGTGATTTGTGAGTTAAGAGCAGAGCTAGAGAGATTGCAAGCTGAAAATACCTCGGAGTGGGACAAGAGGGAAATACTTGAAAGAGAAAAGCAGGGACTGGAGAGAGAAAATAGAAGGCTGAAGATCCAGGTGAAAGAAATGGAAGAGCTTTTGGATAAGAAAAATAGATTAAGTGCAAACTCTCAAAGTCCTGATTTCAAGATGTCACAAATTGATCTGCAAGAAAAAAACCAGGAATTACTGAACCTTCAACATGCCTACTATAAACTAAACAGACAATACCAGGCAAATATTGCAGAACTGACTCATGCAAACAACCGAGTGGATCAAAATGAAGCAGAAGTAAAGAAACTAAGATTACGAGTGGAAGAACTAAAGCAGGGACTCAATCAAAAAGAAGATGAGCTTGATGATTCCCTGAATCAGATCCGTAAGCTCCAGAGGTCTCTGGATGAAGAGAAAGAAAGAAATGAAAACTTAGAGACTGAACTCAGGCACTTGCAAAACTGGTAA MASNFNDIVKQGYVKIRSRKLGFDILLGQHNDEMQELSGNIKEESKSQNSKDRVICELRAELERLQAENTSEWDKREILEREKQGLERENRRLKIQVKEMEELLDKKNRLSANSQSPDFKMSQIDLQEKNQELLNLQHAYYKLNRQYQANIAELTHANNRVDQNEAEVKKLRLRVEELKQGLNQKEDELDDSLNQIRKLQRSLDEEKERNENLETELRHLQNW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30966 BPTF::ARSG ENSG00000171634.19::ENSG00000141337.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BPTF ENSG00000171634.19 protein_coding + + chr17:67825503-67984378:+ chr17:67854762:+ chr17:65821619-65980494:+ chr17:65850878:+ ARSG ENSG00000141337.13 protein_coding + + chr17:68259182-68422731:+ chr17:68306943:+ chr17:66255323-66418872:+ chr17:66303084:+ chr17:67862931,chr17:67862930 chr17:68292618,chr17:68292614 NA NA chr17:65859047,chr17:65859046 chr17:66288759,chr17:66288755 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019"];INTRACHROMOSOMAL[chr17:0.27Mb] 22 9 22 9 ONLY_REF_SPLICE YES_LDAS 0.2827 GT 1.8892 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30967 KMT2E::LETM2 ENSG00000005483.23::ENSG00000165046.13 NCIH520 SRR8615799 SRR8670692 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105081797:+ chr7:104581390-104755466:+ chr7:104722244:+ LETM2 ENSG00000165046.13 protein_coding + + chr8:38386207-38409527:+ chr8:38402525:+ chr8:38243725-38267045:+ chr8:38260043:+ chr7:105085298,chr7:105085579,chr7:105085299 chr8:38400888,chr8:38400888,chr8:38400886 NA NA chr7:104725745,chr7:104726026,chr7:104725746 chr8:38258406,chr8:38258406,chr8:38258404 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ASH2L-like_WH|107-167|0.00012^PHD_5|117-164|2.5e-15^PHD|121-163|3.8e-11^PHD_2|131-163|1.1e-07^ASH2L-like_WH|226-246|2.4^SET|343-445|3.1e-17 none ["DepMap2023"];INTERCHROMOSOMAL[chr7--chr8] 15 12 15 12 ONLY_REF_SPLICE YES_LDAS 0.2462 GT 1.8256 AG 1.8295 ENST00000257745.9 1-1358 ENST00000524874.5 841-1332 chr7|+|[0]105040953-105041023[1]|[2]105062164-105062278[2]|[0]105063351-105063580[1]|[2]105066727-105066807[1]|[2]105073619-105073677[0]|[1]105074643-105074815[2]|[0]105076043-105076081[2]|[0]105076963-105077193[2]|[0]105077303-105077433[1]|[2]105078846-105078963[2]|[0]105081688-105081797[1]<==>chr8|+|[0]38402525-38402644[2]|[0]38404393-38404506[2]|[0]38406946-38407038[2]|[0]38407362-38407463[2]|[0]38408212-38408274[2] atgagcatagtgatcccattgggggttgatacagcagagacgtcatacttggaaatggctgcaggttcagaaccagaatccgtagaagctagccctgtggtagttgagaaatccaacagttatccccaccagttatataccagcagctcacatcattcacacagttacattggtttgccctatgcggaccataattatggtgctcgtcctcctccgacacctccggcttcccctcctccatcagtccttattagcaaaaatgaagtaggcatatttaccactcctaattttgatgaaacttccagtgctactacaatcagcacatctgaggatggaagttatggtactgatgtaaccaggtgcatatgtggttttacacatgatgatggatacatgatctgttgtgacaaatgcagcgtttggcaacatattgactgcatggggattgataggcagcatattcctgatacatatctatgtgaacgttgtcagcctaggaatttggataaagagagggcagtgctactacaacgccggaaaagggaaaatatgtcagatggtgataccagtgcaactgagagtggtgatgaggttcctgtggaattatatactgcatttcagcatactccaacatcaattactttaactgcttcaagagtttccaaagttaatgataaaagaaggaaaaaaagcggggagaaagaacaacacatttcaaaatgtaaaaaggcatttcgtgaaggatctaggaagtcatcaagagttaagggttcagctccagagattgatccttcatctgatggttcaaattttggatgggagacaaagatcaaagcatggatggatcgatatgaagaagcaaataacaaccagtacagtgagggtgttcagagggaggcacaaagaatagctctgagattaggcaatggaaatgacaaaaaagagatgaataaatccgatttgaataccaacaatttgctcttcaaacctcctgtagagagccatatacaaaagaataagaaaattcttaaatctgcaaaagatttgcctcctgatgcacttatcattgaatacagagggaagtttatgctgagagaacagtttgaagcaaatgggtatttctttaaaagaccatacccttttgtgttattctactctaaatttcatgggctagaaatgtgtgttgatgcaaggacttttgggaatgaggctcgattcatcaggcggtcttgtacacccaatgcagaggtgaggcatgaaattcaagatggaaccatacatctttatatttattctatacacagtattccaaagggaactgaaattactattgcctttgattttgactatggaaattgATAATTGCCAAGGAAGGGGTGACAGCATTGAGTGTATCAGAACTACAGGCTGCCTGTAGGGCCCGAGGGATGAGATCACTGGGTCTCACGGAGGAACAACTGCGACAACAGCTCACGGAGTGGCAGGACCTCCACCTGAAGGAGAACGTCCCTCCTTCCCTTTTGCTCCTGTCCCGCACCTTCTACCTGATAGATGTGAAGCCCAAGCCGATTGAGATACCACTCAGTGGGGAGGCTCCAAAGACTGATATTCTTGTGGAATTACCTACTTTCACTGAATCTAAAGAGAACATGGTGGATCTTGCACCTCAACTGAAGGGAACTAAGGATGAAGACTTTATACAGCCGCCACCAGTTACATCATCACCCATAACACCATCAACACCTATTTCATTACCTAAAGGACCCATCACTTCTTCTGAAGAACCTACACTCCAGGCCAAATCACAAATGACGGCCCAGAACAGCAAGGCTAGTTCAAAAGGAGCATAA MSIVIPLGVDTAETSYLEMAAGSEPESVEASPVVVEKSNSYPHQLYTSSSHHSHSYIGLPYADHNYGARPPPTPPASPPPSVLISKNEVGIFTTPNFDETSSATTISTSEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQRRKRENMSDGDTSATESGDEVPVELYTAFQHTPTSITLTASRVSKVNDKRRKKSGEKEQHISKCKKAFREGSRKSSRVKGSAPEIDPSSDGSNFGWETKIKAWMDRYEEANNNQYSEGVQREAQRIALRLGNGNDKKEMNKSDLNTNNLLFKPPVESHIQKNKKILKSAKDLPPDALIIEYRGKFMLREQFEANGYFFKRPYPFVLFYSKFHGLEMCVDARTFGNEARFIRRSCTPNAEVRHEIQDGTIHLYIYSIHSIPKGTEITIAFDFDYGN**LPRKG*QH*VYQNYRLPVGPEG*DHWVSRRNNCDNSSRSGRTST*RRTSLLPFCSCPAPST**M*SPSRLRYHSVGRLQRLIFLWNYLLSLNLKRTWWILHLN*RELRMKTLYSRHQLHHHP*HHQHLFHYLKDPSLLLKNLHSRPNHK*RPRTARLVQKEH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30983 UBAP2::CCDC171 ENSG00000137073.24::ENSG00000164989.17 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1338 FALSE NA FALSE NA UBAP2 ENSG00000137073.24 protein_coding - - chr9:33921693-34049388:- chr9:34048825:- chr9:33921691-34049386:- chr9:34048823:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15846702:+ chr9:15553041-16061661:+ chr9:15846700:+ chr9:34038569,chr9:34038575 chr9:15829345,chr9:15829339 NA NA chr9:34038567,chr9:34038573 chr9:15829343,chr9:15829337 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:17.86Mb] 172 0 172 0 ONLY_REF_SPLICE YES_LDAS 1.5753 GT 1.5656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30984 TP53::GLP2R ENSG00000141510.18::ENSG00000065325.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1334 FALSE NA FALSE NA TP53 ENSG00000141510.18 protein_coding - - chr17:7661779-7687538:- chr17:7687377:- chr17:7565097-7590856:- chr17:7590695:- GLP2R ENSG00000065325.13 protein_coding + + chr17:9822206-9892099:+ chr17:9887932:+ chr17:9725523-9795416:+ chr17:9791249:+ chr17:7678951,chr17:7678953 chr17:9884878,chr17:9884876 NA NA chr17:7582269,chr17:7582271 chr17:9788195,chr17:9788193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TP53:OncomapV4_panel","TP53:ArcherDX_panel","TP53:Oncogene","TP53:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.13Mb] 100 21 100 21 ONLY_REF_SPLICE YES_LDAS 1.1082 GT 1.8256 AG 1.5301 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tumor protein p53 1 Yes breast, colorectal, lung, sarcoma, prostate, adrenocortical, glioma, Spitzoid tumour, multiple other tumour types breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types Li-Fraumeni syndrome leukaemia_lymphoma, epithelial, mesenchymal, other oncogene, TSG, fusion missense, nonsense, frameshift, translocation, large_deletion FALSE NA NA NA NA NA NA NA NA NA 30985 MYH9::FOXRED2 ENSG00000100345.23::ENSG00000100350.16 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1335 FALSE NA FALSE NA MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36314145:- chr22:36677326-36784055:- chr22:36710190:- FOXRED2 ENSG00000100350.16 protein_coding - - chr22:36487190-36507221:- chr22:36501407:- chr22:36883237-36903268:- chr22:36897454:- chr22:36312166,chr22:36312172 chr22:36503397,chr22:36503400 NA NA chr22:36708211,chr22:36708217 chr22:36899444,chr22:36899447 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Myosin_N|28-72|1.4e-15^CC2-LZ|56-92|1^Myosin_head|83-764|0^AAA_22|166-191|8.7e-05^ERM_helical|196-228|2.7^IQ|783-799|6.1e-07^ADIP|832-878|3.5^CC2-LZ|839-915|9^Myosin_tail_1-PARTIAL|841-1554~|0^ADIP|841-913|9^ERM_helical|844-916|9^Crescentin|850-976|0.16^AAA_22|886-949|0.84^ADIP|889-969|0.41^CC2-LZ|897-978|9^ERM_helical|923-1019|0.017^Myosin_head|940-1061|9^ADIP|954-1025|5.8^Crescentin|969-1148|1.5e-05^ERM_helical|1011-1119|0.7^CC2-LZ|1018-1071|4.2^ADIP|1029-1101|7.1e-05^CC2-LZ|1068-1149|1e-06^ADIP|1089-1194|0.57^ERM_helical|1103-1209|9^Crescentin|1157-1216|9^ADIP|1165-1261|0.01^Myosin_head|1166-1224|1^ERM_helical|1175-1284|0.00093^CC2-LZ|1176-1224|2.2^Crescentin|1197-1373|0.00013^AAA_22|1198-1259|0.63^CC2-LZ|1244-1331|1.7^ADIP|1284-1345|0.071^ADIP|1318-1395|0.015^ERM_helical|1321-1432|0.03^CC2-LZ|1330-1419|0.43^ERM_helical|1354-1474|9^Crescentin|1380-1554|0.0022^ADIP|1394-1456|0.57^CC2-LZ|1407-1462|9^Myosin_head|1417-1417|7.9^Myosin_head|1454-1552|4.1^ERM_helical-PARTIAL|1459-1554~|0.015^ADIP-PARTIAL|1480-1554~|8.1e-07^Crescentin-PARTIAL|1505-1554~|0.00017^CC2-LZ-PARTIAL|1510-1554~|9^AAA_22|1521-1524|2.3^ERM_helical-PARTIAL|1524-1554~|9^CC2-LZ-PARTIAL|1533-1554~|9 none ["MYH9:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.10Mb];LOCAL_REARRANGEMENT:-:[99172] 39 13 39 13 ONLY_REF_SPLICE YES_LDAS 0.4763 GT 1.9656 AG 1.9329 ENST00000216181.11 1-1554 ENST00000688870.1 528-1533 chr22|-|[2]36314145-36314318[0]|[2]36316517-36316669[0]|[2]36318207-36318325[1]|[0]36319540-36319635[1]|[0]36320220-36320363[1]|[0]36320798-36320896[1]|[0]36321758-36321821[0]|[2]36322429-36322521[0]|[2]36326568-36326661[2]|[1]36327461-36327488[1]|[0]36341370-36341526[0]|[2]36348904-36349236[0]<==>chr22|-|[2]36490008-36490267[1]|[0]36493633-36493803[1]|[0]36495967-36496208[2]|[1]36497991-36498156[1]|[0]36501241-36501407[2] atggcacagcaagctgccgataagtatctctatgtggataaaaacttcatcaacaatccgctggcccaggccgactgggctgccaagaagctggtatgggtgccttccgacaagagtggctttgagccagccagcctcaaggaggaggtgggcgaagaggccatcgtggagctggtggagaatgggaagaaggtgaaggtgaacaaggatgacatccagaagatgaacccgcccaagttctccaaggtggaggacatggcagagctcacgtgcctcaacgaagcctcggtgctgcacaacctcaaggagcgttactactcagggctcatctacacctattcaggcctgttctgtgtggtcatcaatccttacaagaacctgcccatctactctgaagagattgtggaaatgtacaagggcaagaagaggcacgagatgccccctcacatctatgccatcacagacaccgcctacaggagtatgatgcaagaccgagaagatcaatccatcttgtgcactggtgaatctggagctggcaagacggagaacaccaagaaggtcatccagtatctggcgtacgtggcgtcctcgcacaagagcaagaaggaccagggcgagctggagcggcagctgctgcaggccaaccccatcctggaggccttcgggaacgccaagaccgtgaagaatgacaactcctcccgcttcggcaaattcattcgcatcaactttgatgtcaatggctacattgttggagccaacattgagacttatcttttggagaaatctcgtgctatccgccaagccaaggaagaacggaccttccacatcttctattatctcctgtctggggctggagagcacctgaagaccgatctcctgttggagccgtacaacaaataccgcttcctgtccaatggacacgtcaccatccccgggcagcaggacaaggacatgttccaggagaccatggaggccatgaggattatgggcatcccagaagaggagcaaatgggcctgctgcgggtcatctcaggggttcttcagctcggcaacatcgtcttcaagaaggagcggaacactgaccaggcgtccatgcccgacaacacagctgcccaaaaggtgtcccatctcttgggtatcaatgtgaccgatttcaccagaggaatcctcaccccgcgcatcaaggtgggacgggattacgtccagaaggcgcagactaaagagcaggctgactttgccatcgaggccttggccaaggcgacctatgagcggatgttccgctggctggtgctgcgcatcaacaaggctctggacaagaccaagaggcagggcgcctccttcatcgggatcctggacattgccggcttcgagatctttgatctgaactcgtttgagcagctgtgcatcaattacaccaatgagaagctgcagcagctcttcaaccacaccatgttcatcctggagcaggaggagtaccagcgcgagggcatcgagtggaacttcatcgactttggcctcgacctgcagccctgcatcgacctcattgagaagccaGTCCCTCAGACTTAACTCGGGAAATGCATTCGGCAAGAAGTACCCGCTGATTCGAGCTAGCTACGAATCCAAAGGAAGCCGGGGTCTGTTTATCCTGGGTACTGCCAGCCACTCGGTGGACTACCGGAAATCTGCTGGGGGCTTCATCCACGGATTCCGATACACAGTGCGTGCTGTTCACCGGCTCCTGGAGCACCGCCACCACAGCGTCACCTGGCCCGCCACTGAGCTCCCCATCACACAGCTGACCAGCTCCATCGTGCGGCGCGTGAATGAGGCTTCTGGGCTCTACCAGATGTTCGGTGTGCTGGCCGATGTCATCCTGTTGAAGGAGAATTCCACGGCCTTTGAGTACCTGGAGGAGTTCCCCATACAGATGCTGGCCCAGCTGGAGACACTCACAGGGAGGAAGGCAAAGCACGGGCTCTTCGTCATCAACATGGAATATGGCAGAAATTTCTCTGGCCCCGACAAGGACGTCTTCTTTGATGACCGGTCTGTGGGGCACACAGAAGATGCCTGGCAGTCTAACTTTCTTCATCCTGTCATCTACTACTATAGATACCTCCCCACCGAACAGGAGGTGAGGTTCCGCCCTGCACACTGGCCCCTGCCTCGGCCCACGGCCATCCATCACATCGTGGAAGACTTCTTAACAGACTGGACTGCCCCGATCGGGCACATCCTACCTCTGAGGCGCTTCCTGGAGAACTGTTTGGACACCGATTTGCGAAGCTTCTATGCAGAGTCCTGCTTCCTGTTCGCCCTCACGCGCCAGAAGTTGCCACCCTTTTGCCAGCAGGGGTACCTGAGGATGCAGGGACTCGTGAGTACCGAGAGCCTTTGGCAGCACAGAGTGGAGAGCAGGCTCCTGCGGGACTATGCCCCCACAGGCAGGCGCCTGGAGGACAGCAGCCAGCAGCTTGGCGACCAAGAGCCACTAGGTTCCCCCCTGGCTCCAGGGCCTCTGGCTCAGTCCGTCGATAGCAACAAAGAGGAGCTCTGA MAQQAADKYLYVDKNFINNPLAQADWAAKKLVWVPSDKSGFEPASLKEEVGEEAIVELVENGKKVKVNKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLKERYYSGLIYTYSGLFCVVINPYKNLPIYSEEIVEMYKGKKRHEMPPHIYAITDTAYRSMMQDREDQSILCTGESGAGKTENTKKVIQYLAYVASSHKSKKDQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGEHLKTDLLLEPYNKYRFLSNGHVTIPGQQDKDMFQETMEAMRIMGIPEEEQMGLLRVISGVLQLGNIVFKKERNTDQASMPDNTAAQKVSHLLGINVTDFTRGILTPRIKVGRDYVQKAQTKEQADFAIEALAKATYERMFRWLVLRINKALDKTKRQGASFIGILDIAGFEIFDLNSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIDLIEKPVPQT*LGKCIRQEVPADSS*LRIQRKPGSVYPGYCQPLGGLPEICWGLHPRIPIHSACCSPAPGAPPPQRHLARH*APHHTADQLHRAARE*GFWALPDVRCAGRCHPVEGEFHGL*VPGGVPHTDAGPAGDTHREEGKARALRHQHGIWQKFLWPRQGRLL**PVCGAHRRCLAV*LSSSCHLLL*IPPHRTGGEVPPCTLAPASAHGHPSHRGRLLNRLDCPDRAHPTSEALPGELFGHRFAKLLCRVLLPVRPHAPEVATLLPAGVPEDAGTREYREPLAAQSGEQAPAGLCPHRQAPGGQQPAAWRPRATRFPPGSRASGSVRR*QQRGAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST no_match 36783852,36737415 FALSE,FALSE 36886314,36889850 FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,In-frame FALSE NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 30990 UTP4::VAC14 ENSG00000141076.18::ENSG00000103043.15 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UTP4 ENSG00000141076.18 protein_coding + + chr16:69131291-69231130:+ chr16:69139914:+ chr16:69165194-69265033:+ chr16:69173817:+ VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70744579:- chr16:70721342-70835063:- chr16:70778482:- chr16:69140526,chr16:69140524 chr16:70748246,chr16:70748248 NA NA chr16:69174429,chr16:69174427 chr16:70782149,chr16:70782151 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|31-58|0.00019^ANAPC4_WD40|31-68|0.00013^Ge1_WD40|33-58|2.1^RMC1_N|33-67|0.0056^PROPPIN|35-59|3.5^WD40|67-98|0.24^ANAPC4_WD40|74-103|0.89^NBCH_WD40|85-146|0.00024^VID27|91-136|0.002^PROPPIN|94-163|0.0015^ANAPC4_WD40|114-150|0.00025^RMC1_N|115-168|0.0098^WD40|116-142|4.6e-07^Ge1_WD40|120-145|0.00082^Frtz|121-188|5e-05^WD40|155-180|2.2e-05^ANAPC4_WD40|156-214|4.4e-07^PQQ_2|182-292|0.00032^VID27|192-274|0.47^Ge1_WD40|198-236|0.016^ANAPC4_WD40|207-256|0.011^RMC1_N|208-241|1.7^WD40|211-236|0.0035^NBCH_WD40|239-320|0.0041^WD40|246-275|0.74^Frtz|249-277|1.1^Ge1_WD40|251-305|0.81^CPSF_A|251-321|7.6e-05^WD40|295-322|0.014^Ge1_WD40|354-424|0.038^PD40|401-422|0.089^WD40|403-420|0.066^PROPPIN|436-530|4.3e-05^ANAPC4_WD40|453-498|0.073^WD40|457-473|3.4^Ge1_WD40|459-497|0.21^RMC1_N|459-529|0.044^PD40|459-473|2.4^VID27|462-516|0.19^CPSF_A|467-480|0.8^NBCH_WD40-PARTIAL|469-568~|0.012^ANAPC4_WD40|486-546|0.0077^WD40|489-525|0.00027^PROPPIN-PARTIAL|500-568~|0.00024^PD40|505-514|0.02^PQQ_2-PARTIAL|509-568~|0.96^WD40|535-564|0.036^ANAPC4_WD40-PARTIAL|542-568~|0.18 none ["VAC14:Oncogene"];["CCLE_StarF2019"] 16 9 16 9 ONLY_REF_SPLICE YES_LDAS 0.2289 GT 1.9086 AG 1.9656 ENST00000562237.5 1-568 ENST00000261776.10 1372-2349 chr16|+|[0]69132596-69132689[0]|[1]69133512-69133618[2]|[0]69136696-69136887[2]|[0]69137801-69137885[0]|[1]69139825-69139914[0]<==>chr16|-|[2]70687928-70688090[2]|[1]70692821-70692971[1]|[0]70695544-70695623[2]|[1]70697139-70697257[0]|[2]70698637-70698811[2]|[1]70731495-70731627[1]|[0]70744423-70744579[0] aggagcacttccggggcagagcctgagagcgcgcgcgcacgtggggccggggcggagagaggcgagcaccgggaaggggagcgtggggccgctggaatccgctgtgtggcttacaataaccagtcaaacagattggctgtttcacgaacagatggcactgtggaaatttataacttgtcagcaaactactttcaggagaaatttttcccaggtcatgagtctcgggctacagaagctttgtgctgggcagaaggacagcgactctttagtgctgggctcaatggcgagattatggagtatgatttacaggcgttaaacatcaagtatgctatggatgcctttggaggacctatttggagcatggctgccagccccagtggctctcaacttttggttggttgtgaagatggatctgtgaaactatttcaaattaccccagacaaaatccagtttgaaagaaattttgatcggcagaaaagtcgcatcctgagtctcagctggcatccctctggtacccacattgcagctggttccatagactacattagtgtgtttgatgtcaaatcagGTGATCCTGAAGGACCTGGAGGTGCTGGCAGAAATCGCTTCCTCCCCCGCAGGCCAGACGGATGACCCAGGCCCCCTCGATGGCCCTGACCTCCAGGCCAGCCACTCAGAGCTCCAGGTGCCCACCCCTGGCAGAGCCGGCCTACTGAACACCTCTGGTACCAAAGGCTTAGAATGTTCTCCTTCAACTCCCACCATGAATTCTTACTTTTATAAGTTCATGATCAACCTTCTCAAGAGATTCAGCAGCGAACGGAAGCTCCTGGAGGTCAGAGGCCCTTTCATCATCAGGCAGCTGTGCCTCCTGCTGAATGCGGAGAACATCTTCCACTCAATGGCAGACATCCTGCTGCGGGAGGAGGACCTCAAGTTCGCCTCGACCATGGTCCACGCCCTCAACACCATCCTGCTGACCTCCACAGAGCTCTTCCAGCTAAGGAACCAGCTGAAGGACCTGAAGACCCTGGAGAGCCAGAACCTGTTCTGCTGCCTGTACCGCTCCTGGTGCCACAACCCAGTCACCACGGTGTCCCTCTGCTTCCTCACCCAGAACTACCGGCACGCCTATGACCTCATCCAGAAGTTTGGGGACCTGGAGGTCACCGTGGACTTCCTCGCAGAGGTGGACAAGCTGGTGCAGCTGATTGAGTGCCCCATCTTCACATATCTGCGCCTGCAGCTGCTGGACGTGAAGAACAACCCCTACCTGATCAAGGCCCTCTACGGCCTGCTCATGCTCCTGCCGCAGAGCAGCGCCTTCCAGCTGCTCTCGCACCGGCTCCAGTGCGTGCCCAACCCTGAGCTGCTGCAGACCGAAGACAGTCTAAAGGCAGCCCCCAAGTCCCAGAAAGCTGACTCCCCTAGCATCGACTACGCAGAGCTGCTGCAGCACTTTGAGAAGGTCCAGAACAAGCACCTGGAAGTGCGGCACCAGCGGAGCGGGCGTGGGGACCACCTGGACCGGAGGGTTGTCCTCTGA RSTSGAEPESARARGAGAERGEHREGERGAAGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGDPEGPGGAGRNRFLPRRPDG*PRPPRWP*PPGQPLRAPGAHPWQSRPTEHLWYQRLRMFSFNSHHEFLLL*VHDQPSQEIQQRTEAPGGQRPFHHQAAVPPAECGEHLPLNGRHPAAGGGPQVRLDHGPRPQHHPADLHRALPAKEPAEGPEDPGEPEPVLLPVPLLVPQPSHHGVPLLPHPELPARL*PHPEVWGPGGHRGLPRRGGQAGAAD*VPHLHISAPAAAGREEQPLPDQGPLRPAHAPAAEQRLPAALAPAPVRAQP*AAADRRQSKGSPQVPES*LP*HRLRRAAAAL*EGPEQAPGSAAPAERAWGPPGPEGCPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30991 GALK2::ATOSA ENSG00000156958.15::ENSG00000047346.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1336 FALSE NA FALSE NA GALK2 ENSG00000156958.15 protein_coding + + chr15:49155656-49367869:+ chr15:49201250:+ chr15:49447853-49660066:+ chr15:49493447:+ ATOSA ENSG00000047346.13 protein_coding - - chr15:52581317-52709817:- chr15:52613857:- chr15:52873514-53002014:- chr15:52906054:- chr15:49216983,chr15:49216984 chr15:52665605,chr15:52665604 NA NA chr15:49509180,chr15:49509181 chr15:52957802,chr15:52957801 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GHMP_kinases_C|14-31|1.9^GalKase_gal_bdg|25-73|6.7e-25^GHMP_kinases_N-PARTIAL|133-142~|1.7e-17 DUF4210|878-935|1.6e-13^Chromosome_seg|1018-1075|1.3e-23 none 16 14 16 11.79 ONLY_REF_SPLICE YES_LDAS 0.2545 GT 1.8295 AG 1.9086 ENST00000560031.6 1-142 ENST00000261844.11 17-3231 chr15|+|[0]49170323-49170375[1]|[2]49201162-49201250[0]<==>chr15|-|[2]52582154-52582307[2]|[1]52584745-52584944[0]|[2]52587151-52587219[0]|[2]52593578-52593736[0]|[2]52600127-52600235[2]|[1]52601086-52601165[0]|[2]52605133-52605246[0]|[2]52608568-52610383[2]|[1]52611130-52611255[2]|[1]52611575-52611777[0]|[2]52613673-52613857[1] atggctacagagagccctgctacgcgtcgggtccaggtggcagaacatcctaggttactgaagctaaaggagatgtttaactccaagtttggatctattcccaagttttatgttcgagcaccaggaagagtcaacataatagATACTCTGGATGAATATTTTGAATATGATGCAGAGGAGTTCTTGGTCTCTTTGGCCTTGCTGATAACAGAAGGACGAACACCTGAATGTTCTGTAAAAGGTCGAACAGAAAGCTTTCATTGCCCTCCAGCACAGTCTTGTTACCCAGTAACTACCAAACATGAATGTAGTGACAAGCTGGCCCAGTGCCGCCAAGCCAGACGAACTAGGTCTGAGGTCACATTGTTGTGGAAGAATAACCTTCCAATCATGGTGGAAATGATGCTACTACCAGACTGCTGCTACAGCGATGATGGGCCCACCACAGAGGGAATTGATCTAAATGATCCTGCGATTAAGCAAGATGCATTATTATTAGAAAGATGGATCTTGGAGCCAGTTCCTCGACAGAATGGTGACCGATTTATTGAAGAGAAGACGCTTCTGTTGGCTGTCCGCTCATTTGTGTTTTTTTCTCAGTTAAGTGCATGGCTGAGTGTTTCTCATGGTGCTATTCCACGAAATATTCTCTACAGAATCAGTGCTGCTGATGTAGACCTACAGTGGAATTTTTCACAGACTCCAATTGAGCATGTGTTTCCTGTTCCCAATGTTTCTCACAATGTTGCCTTGAAAGTCAGTGTTCAGTCCTTGCCCAGACAATCTAATTATCCAGTTTTGACGTGCAGTATTCACACTAATATTGGCCTTTATGAGAAAAGAATTCAACAACATAAACTTAAAACTCATCAGCACCATAACCCAAATGAAGCAGAACAATGTGGTACAAACAGTTCACAGCGTCTGTGTAGCAAACAAACTTGGACCATGGCACCTGAAAGTGTGTTACATGCAAAAAGTGGCCCAAGTCCAGAATATACTGCAGCTGTCAAAAATATCAAACTATATCCAGGCACTGGCAGTAAATCTGACCATGGGACATCTCAAGCCAATATTCTAGGCTTTAGTGGTATAGGTGATATAAAATCACAAGAAACATCAGTGAGAACTTTAAAATCATTTTCAATGGTTGATTCCAGTATCTCTAACCGCCAGAGTTTCTGGCAGTCAGCTGGTGAGACTAACCCTTTAATAGGCTCTTTAATTCAGGAGCGGCAAGAAATCATTGCAAGAATTGCCCAACATTTGATTCATTGTGATCCAAGCACTTCACATGTTTCTGGACGTCCATTTAATACTCAAGAGTCTAGTTCACTCCATTCAAAACTTTTCCGGGTTTCACAAGAAAATGAGAACGTGGGAAAAGGTAAAGAAGCTTTCTCCATGACTTTTGGTAGTCCAGAGTTTAGTTCCCCAGAAGACACCAATGAGGGGAAAATTCGACTAAAACCAGAAACTCCTCGAAGTGAAACTTGTATTTCTAATGACTTTTATTCTCATATGCCTGTTGGAGAGACTAATCCTTTGATAGGCTCTTTACTCCAGGAGCGGCAAGATGTTATTGCAAGGATTGCTCAACACTTGGAGCACATTGATCCAACAGCATCACATATCCCCCGGCAGTCATTCAACATGCATGACTCCAGTTCGGTTGCATCTAAAGTGTTTAGGAGTTCATATGAAGACAAAAATTTGTTGAAGAAAAATAAGGATGAGTCCTCAGTTTCCATTTCTCACACAAAATGTTCCTTGTTAGGAGACATCAGTGATGGGAAAAACTTAGTACCTAATAAATGTTTTACTTCTTTTAAAAATAATAGTAAAGAAAAGTGTTCTTTGAAACATCAAACAAGAAATCAGTGTCAGAACAATCCTAGTGAAATCATCCAAAGTACGTATCAGGAGACACAGAACAAAAGTTCTAGTTTATCAACTTCCTCAATTTTGTCTCAGCACAAAGAAAATAACTTAGATTTGACAAGCAGATTCAAGGAGCAAGAAATGAGCAATGGAATTGATAAACAGTATTCAAATTGCACCACTATTGACAAACAGATTTGTACAAATAAGTATAAGGAAAAAATAATAAATGAGAACTATAATCCAAAATTCTTTGGCAATCTTCAGTCTGATGATTCCAAAAAAAATGACTCAAAAATAAAAGTTACTGTGTTGGAAATGTCTGAATATTTGAACAAATATGAAAGCATGTCCTCAAATAAAGACTCAAAAAGGCCTAAGACATGTGAGCAAAATACTCAACTTAATAGCATAGAGAATTATCTCAATAAAGATAATGAAGGTTTCAAATGTAAAAAGTCAGACCAATTAAAAAATGAACAAGATAAGCAAGAAGATCCAACTAATGAAAAATCCCAAAACTATTCTCAGAGAAGAAGTATAAAAGACTGTTTGTCTACATGTGAGCAACCAAAAAATACAGAGGTATTGAGGACTACACTGAAACATTCAAATGTGTGGCGAAAACATAATTTTCATTCCTTGGATGGAACTTCAACCAGAGCCTTTCATCCTCAAACTGGATTGCCTCTTCTTTCAAGCCCTGTTCCTCAAAGAAAAACACAATCAGGTTGCTTTGATCTGGATTCTTCATTACTACATCTGAAAAGCTTCTCATCTAGAAGTCCTCGACCATGTTTAAACATTGAAGATGATCCAGATATTCATGAAAAACCATTTTTGAGTTCTAGTGCTCCACCTATAACAAGTCTTAGTCTCCTAGGAAATTTTGAGGAATCTGTCTTGAACTATCGTTTCGATCCTCTCGGCATTGTTGATGGTTTTACTGCCGAGGTAGGGGCAAGTGGTGCTTTCTGCCCCACACATTTGACTCTTCCAGTTGAAGTGTCATTCTACAGTGTTTCAGATGACAATGCTCCCTCTCCTTATATGGGTGTGATTACTTTAGAGTCCCTTGGTAAAAGGGGTTATCGAGTACCTCCTTCAGGAACAATACAAGTGACCTTATTTAATCCTAATAAGACTGTGGTGAAGATGTTTGTTGTGATATATGATTTACGAGATATGCCAGCCAATCATCAGACATTCCTACGACAAAGAACTTTTTCTGTACCTGTTAAACAAGAAGTGAAGAGAAGTGTTAATAAAGAGAACATCCGACACACAGAAGAACGGTTATTACGCTACCTCATACATCTGAGGTTCCAGAGTTCTAAATCTGGAAAGATCTACCTCCATAGAGACGTACGGCTCCTGTTCTCTAGAAAGTCAATGGAGGTTGATAGCGGTGCTGCATATGAACTCAAATCTTACACTGAATCACCAACAAACCCTCAGTTTTCACCAAGATGTTGA MATESPATRRVQVAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIDTLDEYFEYDAEEFLVSLALLITEGRTPECSVKGRTESFHCPPAQSCYPVTTKHECSDKLAQCRQARRTRSEVTLLWKNNLPIMVEMMLLPDCCYSDDGPTTEGIDLNDPAIKQDALLLERWILEPVPRQNGDRFIEEKTLLLAVRSFVFFSQLSAWLSVSHGAIPRNILYRISAADVDLQWNFSQTPIEHVFPVPNVSHNVALKVSVQSLPRQSNYPVLTCSIHTNIGLYEKRIQQHKLKTHQHHNPNEAEQCGTNSSQRLCSKQTWTMAPESVLHAKSGPSPEYTAAVKNIKLYPGTGSKSDHGTSQANILGFSGIGDIKSQETSVRTLKSFSMVDSSISNRQSFWQSAGETNPLIGSLIQERQEIIARIAQHLIHCDPSTSHVSGRPFNTQESSSLHSKLFRVSQENENVGKGKEAFSMTFGSPEFSSPEDTNEGKIRLKPETPRSETCISNDFYSHMPVGETNPLIGSLLQERQDVIARIAQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSVSISHTKCSLLGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQCQNNPSEIIQSTYQETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDKQYSNCTTIDKQICTNKYKEKIINENYNPKFFGNLQSDDSKKNDSKIKVTVLEMSEYLNKYESMSSNKDSKRPKTCEQNTQLNSIENYLNKDNEGFKCKKSDQLKNEQDKQEDPTNEKSQNYSQRRSIKDCLSTCEQPKNTEVLRTTLKHSNVWRKHNFHSLDGTSTRAFHPQTGLPLLSSPVPQRKTQSGCFDLDSSLLHLKSFSSRSPRPCLNIEDDPDIHEKPFLSSSAPPITSLSLLGNFEESVLNYRFDPLGIVDGFTAEVGASGAFCPTHLTLPVEVSFYSVSDDNAPSPYMGVITLESLGKRGYRVPPSGTIQVTLFNPNKTVVKMFVVIYDLRDMPANHQTFLRQRTFSVPVKQEVKRSVNKENIRHTEERLLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGAAYELKSYTESPTNPQFSPRC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30996 CCDC57::PACS1 ENSG00000176155.21::ENSG00000175115.13 NCIH358 SRR8615805 SRR8652079 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) primary star-fusion TRUE FALSE TRUE 1337 FALSE NA FALSE NA CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82151560:- chr17:80059336-80170754:- chr17:80109436:- PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66193486:+ chr11:65837743-66012215:+ chr11:65960957:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tli4_C|169-233|0.00018^REST_helical|367-416|0.00078^Tli4_C|367-433|0.028^Tli4_C|471-531|0.023^REST_helical|583-605|1.8 Pacs-1|548-958|4.2e-198 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr11] 5 6 5 6 ONLY_REF_SPLICE YES_LDAS 0.1008 GT 1.8256 AG 1.9656 ENST00000665763.1 1-2455 ENST00000320580.9 357-2892 chr17|-|[0]82151560-82151773[0]|[2]82157748-82157948[0]|[2]82163200-82163357[1]|[0]82171701-82171853[1]|[0]82172638-82172860[0]|[2]82178474-82178605[0]|[2]82179027-82179189[2]|[1]82183774-82183932[2]|[1]82188219-82188419[2]|[1]82193756-82193830[2]|[1]82193982-82194139[0]|[2]82195263-82195364[0]|[2]82198314-82198422[2]|[1]82201538-82201944[0]<==>chr11|+|[2]66193486-66193573[2]|[0]66210362-66210451[2]|[0]66211134-66211259[2]|[0]66216119-66216263[0]|[1]66216520-66216611[2]|[0]66216695-66216775[2]|[0]66219746-66219805[2]|[0]66220631-66220791[1]|[2]66221154-66221247[2]|[0]66227504-66227584[2]|[0]66230548-66230663[1]|[2]66230805-66230940[2]|[0]66232172-66232276[2]|[0]66232960-66233066[1]|[2]66233785-66233939[0]|[1]66234132-66234242[0]|[1]66235301-66235403[1]|[2]66235898-66235940[2]|[0]66238804-66238846[0]|[1]66239142-66239277[1]|[2]66241427-66241653[0]|[1]66242912-66243031[0]|[1]66243165-66243280[2] atgctgccactgggctcagagcccgccctgaatgagctgctgcttcgcaaggaggaggagtggagggcgctgcaggcacaccgcacccagctgcaggaggcggctctgcaggacacacggagccagctggaggaggcgcaggggaaactgcggtgcctgcaggaggactttgtctacaaccttcaggtgctggaggagcgggacctcgagctggagcgctatgacgccgccttcgcccaggccagggagtgggaagaggccaggcgggcagaggtgagcgagctcaagatagaggcagctaagctgaggcaggcgctagccagagaggccaggaaggtggaggagctgcagcagcagcagcagctggcattccaggagcatcgcctggagctggagcgcgtccacagtgacaagaatggtgagattgaccaccaccgggaacagtatgaaaatctaaaatggacactggagagaaaacttgaggagctcgacggtgagcttgctctgcagagacaggaactgctgctggagtttgaatcgaaaatgcggaagagggagcacgaattccgtctgcaggctgacaacatgagcaacacagccttgtcccgggagcttaaggttaaactactgcacaaagagctggaggctctgaaggaagccggggcaaaggctgcagagagtctgcagagggcagaggccaccaacgccgagctggagaggaagctccagagccgagccggggagctccaggacctggaggccatgagccgcgcccgggtaaaggatttagaggataaacttcactctgtgcagctaaccaggaagaaggaagaggaaacatttaagaggaagcatgaggagctcgaccgtctggccagggagaaggatgcagtgctggtggcggtgaagggagcccacgtggagcagctgcaggagctgcagaccagggttctggagctgcaggcccactgcgagaccctcgaggcgcagctccgcagggcagagtggagacaggctgacaccgccaaggagaaggacgctgccattgaccaacttcgtgaagatgcatcaactgtaaaatctgcctgggatgctcaaattgctcaactatctaaggagatggtctccagagaccttcagattcagacgctgcaggaagaagaggtgaagctcaaggcacaggtggcccgatcccagcaggacattgaaaggtacaagcaacagctgtccctggcagtggaaagggagcggagcctggagcgtgatcaggtgcagctgggcctggactggcagcgccgctgtgatgacattgaaagggaccagatccaaaagtcagaggccctgattcagggtctgagcatggcaaaaagtcaggttgctgccaagctgcaggagacagagcaggcgctacaggagcaggaggtggtgctgaaggccgtgaccctggaacgagaccaggccgtgcaggccctgaggatgcatgggctccccagaccaggggcacagatgcttctcaggcagcatgaagaagaaataagtaaagactttccatccagtgagatccagcggctccgagagcagaacacgagcttgcgaaacgcgattgcccagatgaggaaagaaatggaggctctaagccatcagattcctcctcccatccagacagcggcagagagcacagatgcaaaccagcctgacccagaggctgggggagatgccgccactcctgattatgttctggcccttgaagcagaaatacgaactctaaagcataagtttaaaactctggaaaagcatctagaagatgtgttggatcctttaaagatgtcctcacctcatgctgagtctcagcccagcgtccgcacctcgacagagacgactggagggtctgcccaagctggtcaagccggagggtctgtccaagctggtcaagcaggaggatctgtccaagctggcccagtatcctctggactggcactcaggaagctcggggacagagtgcagctcctaaacctgctggtgacacgactcagacagaaggtgctgcgggaacccctggagccggccgctctccagcgtgagcttccccgtgaggtggaccaggtacacctggaggttttggagctgcggaagcaggtggctgagctggggaagcatctcaggatagcccagcacgggggagcggagccttcaggcaggaagcagcccccagcctcggacgccgtggcccttgggagagagggcctcaccaagagagggcctatggaggccgaggaccagggggagcttttcctgcacctccggtcagtggcacgtgccccccagaccttatctatgcaccgactccagagaaagctgaaggaggcagccagaaaaatcatcagcctccgcctggagaaagagcagctcatcgagatggggaacaggctccgtgcagagctgggccgacccgaaaGCTATTCAGCTTGACCCTGAAGAAACTCGTCATGCTAAAAGAAATGGACAAAGATCTTAACTCAGTGGTCATCGCTGTGAAGCTGCAGGGTTCAAAAAGAATTCTTCGCTCCAACGAGATCGTCCTTCCAGCTAGTGGACTGGTGGAAACAGAGCTCCAATTAACCTTCTCCCTTCAGTACCCTCATTTCCTTAAGCGAGATGCCAACAAGCTGCAGATCATGCTGCAAAGGAGAAAACGTTACAAGAATCGGACCATCTTGGGCTATAAGACCTTGGCCGTGGGACTCATCAACATGGCAGAGGTGATGCAGCATCCTAATGAAGGCGCACTGGTGCTTGGCCTACACAGCAACGTGAAGGATGTCTCTGTGCCTGTGGCAGAAATAAAGATCTACTCCCTGTCCAGCCAACCCATTGACCATGAAGGAATCAAATCCAAGCTTTCTGATCGTTCTCCTGATATTGACAATTATTCTGAGGAAGAGGAAGAGAGTTTCTCATCAGAACAGGAAGGCAGTGATGATCCATTGCATGGGCAGGACTTGTTCTACGAAGACGAAGATCTCCGGAAAGTGAAGAAGACCCGGAGGAAACTAACCTCAACCTCTGCCATCACAAGGCAACCTAACATCAAACAGAAGTTTGTGGCCCTCCTGAAGCGGTTTAAAGTTTCAGATGAGGTGGGCTTTGGGCTGGAGCATGTGTCCCGCGAGCAGATCCGGGAAGTGGAAGAGGACTTGGATGAATTGTATGACAGTCTGGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAGACAGAAAGCATCCTCAGCACGCCAAAGCCCAAGCTCAAGCCTTTCTTTGAGGGGATGTCGCAGTCCAGCTCCCAGACGGAGATTGGCAGCCTCAACAGCAAAGGCAGCCTCGGAAAAGACACCACCAGCCCTATGGAATTGGCTGCTCTAGAAAAAATTAAATCTACTTGGATTAAAAACCAAGATGACAGCTTGACTGAAACAGACACTCTGGAAATCACTGACCAGGACATGTTTGGAGATGCCAGCACGAGTCTGGTTGTGCCGGAGAAAGTCAAAACTCCCATGAAGTCCAGTAAAACGGATCTCCAGGGCTCTGCCTCCCCCAGCAAAGTGGAGGGGGTGCACACACCCCGGCAGAAGAGGAGCACGCCCCTGAAGGAGCGGCAGCTCTCCAAGCCCCTAAGTGAGAGGACCAACAGTTCCGACAGCGAGCGCTCCCCAGATCTGGGCCACAGCACGCAGATTCCAAGAAAGGTGGTGTATGACCAGCTCAATCAGATCCTGGTGTCAGATGCAGCCCTCCCAGAAAATGTCATTCTGGTGAACACCACTGACTGGCAGGGCCAGTATGTGGCTGAGCTGCTCCAGGACCAGCGGAAGCCTGTGGTGTGCACCTGCTCCACCGTGGAGGTCCAGGCCGTGCTGTCCGCCCTGCTCACCCGGATCCAGCGCTACTGCAACTGCAACTCTTCCATGCCGAGGCCAGTGAAGGTGGCTGCTGTGGGAGGCCAGAGCTACCTGAGCTCCATCCTCAGGTTCTTTGTCAAGTCCCTGGCCAACAAGACCTCCGACTGGCTTGGCTACATGCGCTTCCTCATCATCCCCCTCGGTTCTCACCCTGTGGCCAAATACTTGGGGTCAGTCGACAGTAAATACAGTAGTTCCTTCCTGGATTCTGGTTGGAGAGATCTGTTCAGTCGCTCGGAGCCACCAGTGTCAGAGCAACTGGACGTGGCAGGGCGGGTGATGCAGTACGTCAACGGGGCAGCCACGACACACCAGCTTCCCGTGGCCGAAGCCATGCTGACTTGCCGGCATAAGTTCCCTGATGAAGACTCCTATCAGAAGTTTATTCCCTTCATTGGCGTGGTGAAGGTGGGTCTGGTTGAAGACTCTCCCTCCACAGCAGGCGATGGGGACGATTCTCCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCCAGCTCGGGCCTGAGCCGAGACGCCACGGCCACCCCTCCCTCCTCCCCATCTATGAGCAGCGCCCTGGCCATCGTGGGGAGCCCTAATAGCCCATATGGGGACGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCCGGGGAGCGGAGGAGGGAAGGCGACAAGAGGGACGCCAGCTCGAAGAACACCCTCAAGAGTGTCTTCCGCTCAGTGCAGGTGTCCCGCCTGCCCCATAGTGGGGAGGCCCAGCTTTCTGGCACCATGGCCATGACTGTGGTCACCAAAGAAAAGAACAAGAAAGTTCCCACCATCTTCCTGAGCAAGAAACCCCGAGAAAAGGAGGTGGATTCTAAGAGCCAGGTCATTGAAGGCATCAGCCGCCTCATCTGCTCAGCCAAGCAGCAGCAGACTATGCTGAGAGTGTCCATCGATGGGGTCGAGTGGAGTGACATCAAGTTCTTCCAGCTGGCAGCCCAGTGGCCCACCCATGTCAAGCACTTTCCAGTGGGACTCTTCAGTGGCAGCAAGGCCACCTGA MLPLGSEPALNELLLRKEEEWRALQAHRTQLQEAALQDTRSQLEEAQGKLRCLQEDFVYNLQVLEERDLELERYDAAFAQAREWEEARRAEVSELKIEAAKLRQALAREARKVEELQQQQQLAFQEHRLELERVHSDKNGEIDHHREQYENLKWTLERKLEELDGELALQRQELLLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAEATNAELERKLQSRAGELQDLEAMSRARVKDLEDKLHSVQLTRKKEEETFKRKHEELDRLAREKDAVLVAVKGAHVEQLQELQTRVLELQAHCETLEAQLRRAEWRQADTAKEKDAAIDQLREDASTVKSAWDAQIAQLSKEMVSRDLQIQTLQEEEVKLKAQVARSQQDIERYKQQLSLAVERERSLERDQVQLGLDWQRRCDDIERDQIQKSEALIQGLSMAKSQVAAKLQETEQALQEQEVVLKAVTLERDQAVQALRMHGLPRPGAQMLLRQHEEEISKDFPSSEIQRLREQNTSLRNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKHKFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQAGPVSSGLALRKLGDRVQLLNLLVTRLRQKVLREPLEPAALQRELPREVDQVHLEVLELRKQVAELGKHLRIAQHGGAEPSGRKQPPASDAVALGREGLTKRGPMEAEDQGELFLHLRSVARAPQTLSMHRLQRKLKEAARKIISLRLEKEQLIEMGNRLRAELGRPESYSA*P*RNSSC*KKWTKILTQWSSL*SCRVQKEFFAPTRSSFQLVDWWKQSSN*PSPFSTLISLSEMPTSCRSCCKGENVTRIGPSWAIRPWPWDSSTWQR*CSILMKAHWCLAYTAT*RMSLCLWQK*RSTPCPANPLTMKESNPSFLIVLLILTIILRKRKRVSHQNRKAVMIHCMGRTCSTKTKISGK*RRPGGN*PQPLPSQGNLTSNRSLWPS*SGLKFQMRWALGWSMCPASRSGKWKRTWMNCMTVWRCTTPATVALRWRRQKASSARQSPSSSLSLRGCRSPAPRRRLAASTAKAASEKTPPALWNWLL*KKLNLLGLKTKMTA*LKQTLWKSLTRTCLEMPARVWLCRRKSKLP*SPVKRISRALPPPAKWRGCTHPGRRGARP*RSGSSPSP*VRGPTVPTASAPQIWATARRFQERWCMTSSIRSWCQMQPSQKMSFW*TPLTGRASMWLSCSRTSGSLWCAPAPPWRSRPCCPPCSPGSSATATATLPCRGQ*RWLLWEARAT*APSSGSLSSPWPTRPPTGLATCASSSSPSVLTLWPNTWGQSTVNTVVPSWILVGEICSVARSHQCQSNWTWQGG*CSTSTGQPRHTSFPWPKPC*LAGISSLMKTPIRSLFPSLAW*RWVWLKTLPPQQAMGTILLWSALLCPPHHHPPARA*AETPRPPLPPPHL*AAPWPSWGALIAHMGT*LASRWTTGWATPGSGGGKATRGTPARRTPSRVSSAQCRCPACPIVGRPSFLAPWP*LWSPKKRTRKFPPSS*ARNPEKRRWILRARSLKASAASSAQPSSSRLC*ECPSMGSSGVTSSSSSWQPSGPPMSSTFQWDSSVAARPP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 30997 PLXNB2::DENND6B ENSG00000196576.16::ENSG00000205593.12 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1339 TRUE 2384 TRUE 921 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50307553:- chr22:50713408-50746075:- chr22:50745982:- DENND6B ENSG00000205593.12 protein_coding - - chr22:50309030-50327012:- chr22:50319003:- chr22:50747459-50765441:- chr22:50757432:- chr22:50298801,chr22:50298806,chr22:50298880 chr22:50325600,chr22:50325602,chr22:50325512 NA NA chr22:50737230,chr22:50737235,chr22:50737309 chr22:50764029,chr22:50764031,chr22:50763941 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[1403] 450 13 450 10.68 ONLY_REF_SPLICE YES_LDAS 3.7182 GT 1.6402 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31000 PLXNB2::DENND6B ENSG00000196576.16::ENSG00000205593.12 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1340 TRUE 2384 TRUE 921 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50301347:- chr22:50713408-50746075:- chr22:50739776:- DENND6B ENSG00000205593.12 protein_coding - - chr22:50309030-50327012:- chr22:50319003:- chr22:50747459-50765441:- chr22:50757432:- chr22:50298801,chr22:50298806,chr22:50298880 chr22:50325600,chr22:50325602,chr22:50325512 NA NA chr22:50737230,chr22:50737235,chr22:50737309 chr22:50764029,chr22:50764031,chr22:50763941 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[1403] 71 40 71 29.32 ONLY_REF_SPLICE YES_LDAS 0.8097 GT 1.8256 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31001 PHF12::MAPT ENSG00000109118.14::ENSG00000186868.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1344 TRUE 4818 TRUE 1799 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950895:- chr17:27232268-27278789:- chr17:27277913:- MAPT ENSG00000186868.18 protein_coding + + chr17:45894527-46028334:+ chr17:45991460:+ chr17:43971893-44105700:+ chr17:44068826:+ chr17:28950488,chr17:28950493,chr17:28950492 chr17:45989885,chr17:45989880,chr17:45989882 NA NA chr17:27277506,chr17:27277511,chr17:27277510 chr17:44067251,chr17:44067246,chr17:44067248 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PHD-PARTIAL|59-66~|1.5e-14 Tubulin-binding-PARTIAL|~256-276|1.5e-16^Glyco_hydro_45|300-405|2.8e-05^Tmemb_cc2|305-380|5.1e-06^Tubulin-binding|320-351|2e-19^Tubulin-binding|352-368|0.013 ["DepMap2023"];INTRACHROMOSOMAL[chr17:16.94Mb] 47 8 47 4.76 ONLY_REF_SPLICE YES_LDAS 0.4177 GT 1.4256 AG 1.7465 ENST00000583524.5 1-66 ENST00000680674.1 256-1275 chr17|-|[2]28950895-28950960[0]<==>chr17|+|[0]45991460-45991586[0]|[1]45996399-45996664[2]|[0]46010310-46010402[2]|[0]46014243-46014324[0]|[1]46017474-46017596[0]|[1]46018618-46018730[2]|[0]46023956-46024171[2] atgtgggagaaaatggagaccaagacgatcgtgtacgacttggacacatcaggggggctgatggagGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCGTCTTCCGCCAAGAGCCGCCTGCAGACAGCCCCCGTGCCCATGCCAGACCTGAAGAATGTCAAGTCCAAGATCGGCTCCACTGAGAACCTGAAGCACCAGCCGGGAGGCGGGAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAACGTCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACGTCCCGGGAGGCGGCAGTGTGCAAATAGTCTACAAACCAGTTGACCTGAGCAAGGTGACCTCCAAGTGTGGCTCATTAGGCAACATCCATCATAAACCAGATGGAGTTGTACTCTCATTGCCCAGGCTGGAATGTAATGGCACAATCTCGGCTCACTGCAACCTCCACCTCCTGGATTCAAGCAATTCTCCTGTCTCAGCTTCCCAAGTAGCTGGGATTACAGGAGGTGGCCAGGTGGAAGTAAAATCTGAGAAGCTTGACTTCAAGGACAGAGTCCAGTCGAAGATTGGGTCCCTGGACAATATCACCCACGTCCCTGGCGGAGGAAATAAAAAGATTGAAACCCACAAGCTGACCTTCCGCGAGAACGCCAAAGCCAAGACAGACCACGGGGCGGAGATCGTGTACAAGTCGCCAGTGGTGTCTGGGGACACGTCTCCACGGCATCTCAGCAATGTCTCCTCCACCGGCAGCATCGACATGGTAGACTCGCCCCAGCTCGCCACGCTAGCTGACGAGGTGTCTGCCTCCCTGGCCAAGCAGGGTTTGTGA MWEKMETKTIVYDLDTSGGLMEGADGKTKIATPRGAAPPGQKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTPSLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGGKVQIINKKLDLSNVQSKCGSKDNIKHVPGGGSVQIVYKPVDLSKVTSKCGSLGNIHHKPDGVVLSLPRLECNGTISAHCNLHLLDSSNSPVSASQVAGITGGGQVEVKSEKLDFKDRVQSKIGSLDNITHVPGGGNKKIETHKLTFRENAKAKTDHGAEIVYKSPVVSGDTSPRHLSNVSSTGSIDMVDSPQLATLADEVSASLAKQGL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31008 DIP2B::PPHLN1 ENSG00000066084.13::ENSG00000134283.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DIP2B ENSG00000066084.13 protein_coding + + chr12:50504985-50748657:+ chr12:50660319:+ chr12:50898768-51142440:+ chr12:51054102:+ PPHLN1 ENSG00000134283.18 protein_coding + + chr12:42238447-42459715:+ chr12:42335883:+ chr12:42632249-42853517:+ chr12:42729685:+ chr12:50666172 chr12:42270088 NA NA chr12:51059955 chr12:42663890 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DMAP_binding|14-131|1.1e-38^GvpG|18-51|2.3e-07^AMP-binding-PARTIAL|364-427~|8.4e-24 Lge1|298-371|9.1e-28 ["DepMap2023"];INTRACHROMOSOMAL[chr12:8.05Mb] 21 11 21 11 ONLY_REF_SPLICE YES_LDAS 0.2583 GT 1.7232 AG 1.9086 ENST00000301180.10 1-427 ENST00000549190.5 35-1158 chr12|+|[0]50505141-50505240[0]|[1]50625976-50626047[0]|[1]50640724-50640852[0]|[1]50660194-50660319[0]<==>chr12|+|[1]42335883-42335974[2]|[0]42351885-42352049[2]|[0]42355161-42355222[1]|[2]42374863-42375074[0]|[1]42384940-42384996[0]|[1]42387456-42387535[2]|[0]42393570-42393689[2]|[0]42398854-42398994[2]|[0]42441315-42441509[2] atggcggaacgaggcctggagccgtcgccggccgcggtggcggcgctgccgcctgaagtgcgggcgcagctggcggagctggagctggagctctcggagggggacatcacccagaagggctatgaaaagaaaaggtccaaactcctatctccttacagcccgcagacacaagaaactgattcagcagtacagaaagaacttagaaaccagacacctgctccatctgcagctcaaacttctgctccctctaagtaccaccgaactcgatctgggggagccagggatgaacgatatcgatcagatatccacacagaagcagttcaggctgcactggcaaagcataaagaacagaagatggctttgcccatgccaaccaaaaggcgatccacatttgttcagtctcctgcagatgcctgcacacctcctgTGGCTTACAGAAGAGACGAAATGTGGTCTGAGGGACGATATGAATATGAAAGAATTCCGAGAGAACGAGCACCTCCTCGAAGTCATCCCAGTGATGGCTACAATAGACTAGTTAATATTGTGCCAAAGAAACCACCACTGCTAGACAGACCTGGTGAAGGAAGCTACAATAGATATTACAGTCATGTTGATTACCGAGACTATGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGTCCACCTCACAGAGGAGATGAATCTGGTTATAGATGGACAAGAGACGATCATTCTGCAAGCAGGCAACCTGAATACAGGGACATGAGAGATGGCTTTAGAAGAAAAAGTTTCTACTCTTCCCATTATGCGAGAGAGCGGTCTCCTTATAAAAGGGACAATACTTTTTTCAGAGAATCACCTGTTGGCCGAAAGGATTCTCCACACAGCAGATCTGGTTCCAGTGTCAGTAGCAGAAGCTACTCTCCAGAAAGGAGCAAATCATACTCTTTCCATCAGTCTCAACATAGAAAGTCCGTGCGTCCTGGTGCCTCCTACAAACGGCAGAATGAAGGAAATCCTGAAAGAGATAAAGAGAGGCCTGTCCAGTCTTTGAAAACATCAAGAGATACTTCACCCTCAAGTGGTTCAGCAGTTTCTTCATCAAAGGTGTTAGACAAACCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTGCAAGCAAGTGGGCTGCTGAAAAGCTAGAGAAATCAGATGAAAGTAACTTGCCTGAAATTTCTGAGTATGAGGCGGGATCCACAGCACCATTGTTTACTGACCAGCCAGAGGAACCTGAGTCAAACACAACACATGGGATAGAATTATTTGAAGATAGTCAGCTAACCACTCGCTCTAAAGCAATAGCATCAAAAACCAAAGAGATTGAACAGGTTTACCGACAAGACTGTGAAACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAGATCCTTCATTAGAAAAGTCTATACAGTTTGCATTGAGGCAGAATTTACATGAAATAGGTGAGCGGTGTGTTGAAGAACTCAAGCATTTCATTGCAGAGTATGATACTTCCACTCAAGATTTTGGAGAGCCTTTTTAG MAERGLEPSPAAVAALPPEVRAQLAELELELSEGDITQKGYEKKRSKLLSPYSPQTQETDSAVQKELRNQTPAPSAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPADACTPPVAYRRDEMWSEGRYEYERIPRERAPPRSHPSDGYNRLVNIVPKKPPLLDRPGEGSYNRYYSHVDYRDYDEGRSFSHDRRSGPPHRGDESGYRWTRDDHSASRQPEYRDMRDGFRRKSFYSSHYARERSPYKRDNTFFRESPVGRKDSPHSRSGSSVSSRSYSPERSKSYSFHQSQHRKSVRPGASYKRQNEGNPERDKERPVQSLKTSRDTSPSSGSAVSSSKVLDKPSRLTEKELAEAASKWAAEKLEKSDESNLPEISEYEAGSTAPLFTDQPEEPESNTTHGIELFEDSQLTTRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFIAEYDTSTQDFGEPF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31017 PHF12::MAPT ENSG00000109118.14::ENSG00000186868.18 NCIH3255 SRR8615806 SRR8652080 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4818 TRUE 1799 PHF12 ENSG00000109118.14 protein_coding - - chr17:28905250-28951771:- chr17:28950895:- chr17:27232268-27278789:- chr17:27277913:- MAPT ENSG00000186868.18 protein_coding + + chr17:45894527-46028334:+ chr17:45990048:+ chr17:43971893-44105700:+ chr17:44067414:+ chr17:28950488,chr17:28950493,chr17:28950492 chr17:45989885,chr17:45989880,chr17:45989882 NA NA chr17:27277506,chr17:27277511,chr17:27277510 chr17:44067251,chr17:44067246,chr17:44067248 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PHD-PARTIAL|59-66~|1.5e-14 none ["DepMap2023"];INTRACHROMOSOMAL[chr17:16.94Mb] 11 10 11 1.92 INCL_NON_REF_SPLICE YES_LDAS 0.1043 GT 1.4256 AG 1.9086 ENST00000583524.5 1-66 ENST00000415613.6 1353-2331 chr17|-|[2]28950895-28950960[0]<==>chr17|+|[2]45990048-45990075[2]|[0]45991460-45991586[0]|[1]45993924-45993977[0]|[1]45996399-45996664[2]|[0]46010310-46010402[2]|[0]46014243-46014324[0]|[1]46018618-46018730[2]|[0]46023956-46024171[2] atgtgggagaaaatggagaccaagacgatcgtgtacgacttggacacatcaggggggctgatggagTTCTGGAGCAAAGGAGATGAAACTCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGCGACTAAGCAAGTCCAGAGAAGACCACCCCCTGCAGGGCCCAGATCTGAGAGAGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCGTCTTCCGCCAAGAGCCGCCTGCAGACAGCCCCCGTGCCCATGCCAGACCTGAAGAATGTCAAGTCCAAGATCGGCTCCACTGAGAACCTGAAGCACCAGCCGGGAGGCGGGAAGGTGCAGATAATTAATAAGAAGCTGGATCTTAGCAACGTCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACGTCCCGGGAGGCGGCAGTGTGCAAATAGTCTACAAACCAGTTGACCTGAGCAAGGTGACCTCCAAGTGTGGCTCATTAGGCAACATCCATCATAAACCAGGAGGTGGCCAGGTGGAAGTAAAATCTGAGAAGCTTGACTTCAAGGACAGAGTCCAGTCGAAGATTGGGTCCCTGGACAATATCACCCACGTCCCTGGCGGAGGAAATAAAAAGATTGAAACCCACAAGCTGACCTTCCGCGAGAACGCCAAAGCCAAGACAGACCACGGGGCGGAGATCGTGTACAAGTCGCCAGTGGTGTCTGGGGACACGTCTCCACGGCATCTCAGCAATGTCTCCTCCACCGGCAGCATCGACATGGTAGACTCGCCCCAGCTCGCCACGCTAGCTGACGAGGTGTCTGCCTCCCTGGCCAAGCAGGGTTTGTGA MWEKMETKTIVYDLDTSGGLMEFWSKGDETQGG*W*NEDRHTAGSSPSRPEGPGQRHQDSSKNPARSKDTTQLCD*ASPEKTTPCRAQI*ER*TSKIRGSQRLQQPRLPRHSRQPLPHPVPSNPTHPGAQEGGSGPYSTQVAVFRQEPPADSPRAHARPEECQVQDRLH*EPEAPAGRREGADN**EAGS*QRPVQVWLKG*YQTRPGRRQCANSLQTS*PEQGDLQVWLIRQHPS*TRRWPGGSKI*EA*LQGQSPVEDWVPGQYHPRPWRRK*KD*NPQADLPRERQSQDRPRGGDRVQVASGVWGHVSTASQQCLLHRQHRHGRLAPARHAS*RGVCLPGQAGFV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31021 TWSG1::PIK3C3 ENSG00000128791.12::ENSG00000078142.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1347 FALSE NA FALSE NA TWSG1 ENSG00000128791.12 protein_coding + + chr18:9334767-9402420:+ chr18:9360071:+ chr18:9334765-9402418:+ chr18:9360069:+ PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:42081123:+ chr18:39535199-39667794:+ chr18:39661087:+ chr18:9387952,chr18:9387952 chr18:42080539,chr18:42080537 NA NA chr18:9387950,chr18:9387950 chr18:39660503,chr18:39660501 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tsg|66-76|1^Tsg|87-153|2.1e-13 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:32.55Mb] 230 90 230 90 ONLY_REF_SPLICE YES_LDAS 3.4546 GT 1.7056 AG 1.7465 ENST00000581641.1 1-223 ENST00000262039.9 2650-2664 chr18|+|[0]9337230-9337352[2]|[0]9359972-9360071[0]<==>chr18|+|[0]42081123-42081137[2] atgaagttacactatgttgctgtgcttactctagccatcctgatgttcctgacatggcttccagaatcactgagctgtaacaaagcactctgtgctagtgatgtgagcaaatgcctcattcaggagctctgccagtgccggccgggagaaggcaattgctcctgctgtaaggagtgcatgctgtgtcttggggccctttgggacgagtgctgtgactgtgttgTACTGGAGAAAATGA MKLHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLCLGALWDECCDCVVLEKM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31022 PPP4R3A::HEATR3 ENSG00000100796.18::ENSG00000155393.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1348 FALSE NA FALSE NA PPP4R3A ENSG00000100796.18 protein_coding - - chr14:91457508-91510554:- chr14:91509506:- chr14:91923852-91976898:- chr14:91975850:- HEATR3 ENSG00000155393.14 protein_coding + + chr16:50065967-50107272:+ chr16:50094705:+ chr16:50099878-50141183:+ chr16:50128616:+ chr14:91499583,chr14:91499840,chr14:91499842 chr16:50092700,chr16:50092629,chr16:50092627 NA NA chr14:91965927,chr14:91966184,chr14:91966186 chr16:50126611,chr16:50126540,chr16:50126538 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ran_BP1|8-74|5.1e-06^WH1|9-99|4.1e-07 none ["CCLE_StarF2019"] 182 52 182 52 ONLY_REF_SPLICE YES_LDAS 2.5262 GT 1.6729 AG 1.8323 ENST00000554308.5 1-149 ENST00000299192.8 1511-2043 chr14|-|[0]91509506-91509654[2]<==>chr16|+|[1]50094705-50094793[2]|[0]50100230-50100373[2]|[0]50102259-50102435[2]|[0]50104939-50105061[2] cggcacgatgaccgacacccggcggcgggtgaaggtgtacacgctcaacgaggaccggcagtgggacgaccggggcaccgggcatgtgtcgtctggctacgtggagcggctgaagggcatgtccctgcttgtcagggctgagagcgacgATTTTGCTAAACATGTTGACTTTCTAGAAGCCATAAGTAGTGCTTTGAGGGCCCTTTTGCAAACAATGGCCTCCAAGAACATTTCCCAGTGCATGACTCCTGATCAGCTGATGACATTATGCAAAGCAGGCATTCATAGTAGTAATGTCGGGGTTAGAGTGAATGTCGTTAGCATTTTAGGAATCACTGGCAGCGTCCTTGCCAAAGAAGATGGTACACTTGAAACTCTTAAGAACATTGGGTGCTTTCTGCTTGAAGTTACCACCAAAGATCCTTCCCTTGTGGTAGCAGGAGAAGCTTTGGATGCCCTCTTTGATGTTTTTGCAGATGGTAAAGAAGCCGAAAGAGCCTCGATTCAAATTAAATTATTATCTGCTCTGAAAGAATTCCAGCCGGTCTTTAAAATGAAGATACGTAAAGAAGGGAGAGGTAACTATAGCACAGATCAGCTGTGTGTTCTTGACAATGTGAAAATGAATTTGCGAAGATTTATTGCTTATCAAGAAACTGTTGAGAAAAGACTGACTTCTTAA GTMTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDDFAKHVDFLEAISSALRALLQTMASKNISQCMTPDQLMTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTKDPSLVVAGEALDALFDVFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGRGNYSTDQLCVLDNVKMNLRRFIAYQETVEKRLTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31023 PTK2::PKHD1L1 ENSG00000169398.20::ENSG00000205038.12 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1349 TRUE 4819 TRUE 1800 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140700891:- chr8:141667999-142012315:- chr8:141710990:- PKHD1L1 ENSG00000205038.12 protein_coding + + chr8:109362461-109537207:+ chr8:109518167:+ chr8:110374690-110549436:+ chr8:110530396:+ chr8:140695968,chr8:140695985 chr8:109517152,chr8:109517135 NA NA chr8:141706067,chr8:141706084 chr8:110529381,chr8:110529364 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FERM_N_2|79-174|5.1e-44^FERM_M|180-292|4.9e-16^FERM_F2|184-277|3.3e-06^UCMA|188-238|0.02^FERM_C_FAK1|304-401|1.1e-43^PK_Tyr_Ser-Thr|466-720|2.9e-100^Pkinase|468-718|2.3e-49^FERM_M|495-521|1.9^Haspin_kinase|536-615|1.3e-06^ABC1|541-620|0.0002^Kinase-like|544-659|6.8e-07^FERM_M|564-590|5.8^UCMA|705-738|0.011^Focal_AT|958-1089|4.7e-62^ABC1|992-1052|1.7^FERM_M|1049-1063|9.6^FERM_C_FAK1|1050-1084|0.94 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:31.13Mb] 76 58 76 57.33 ONLY_REF_SPLICE YES_LDAS 1.4394 GT 1.8256 AG 1.5656 ENST00000519419.5 1-2631 ENST00000526472.1 2474-3516 chr8|-|[2]140700891-140701022[0]|[2]140702570-140702707[0]|[2]140706119-140706205[0]|[2]140717598-140717709[2]|[1]140735251-140735455[1]|[0]140739018-140739107[1]|[0]140743230-140743330[2]|[1]140744652-140744767[0]|[2]140746760-140746860[1]|[0]140752232-140752316[0]|[2]140761165-140761262[1]|[0]140764234-140764290[1]|[0]140789474-140789526[2]|[1]140793354-140793384[1]|[0]140800459-140800576[0]|[2]140803543-140803650[0]|[2]140818277-140818354[0]|[2]140818880-140819020[0]|[2]140830472-140830526[2]|[1]140846260-140846322[2]|[1]140846599-140846678[0]|[2]140864312-140864399[2]|[1]140879471-140879637[0]|[2]140890543-140890769[1]|[0]140920814-140920913[0]<==>chr8|+|[1]109518167-109518508[0]|[1]109522186-109522337[2]|[0]109522744-109522890[2]|[0]109523233-109523386[0]|[1]109526784-109527020[0]|[1]109530080-109530090[2] atgttgttggaactggcaggccaagaggccctgaaaccagcaggtgccatctatatggagaaaagcggatgtagtccatttccagtgtgttgggctaaagaatatgacagatacctagcatctagcaaaataatggcagctgcttaccttgaccccaacttgaatcacacaccaaattcgagtactaagactcacctgggtactggtatggaacgttctcctggtgcaatggagcgagtattaaaggtctttcattattttgaaagcaatagtgagccaaccacctgggccagtattatcaggcatggagatgctactgatgtcaggggcatcattcagaagatagtggacagtcacaaagtaaagcatgtggcctgctatggattccgcctcagtcacctgcggtcagaggaggttcactggcttcacgtggatatgggcgtctccagtgtgagggagaagtatgagcttgctcacccaccagaggagtggaaatatgaattgagaattcgttatttgccaaaaggatttctaaaccagtttactgaagataagccaactttgaatttcttctatcaacaggtgaagagcgattatatgttagagatagctgatcaagtggaccaggaaattgctttgaagttgggttgtctagaaatacggcgatcatactgggagatgcggggcaatgcactagaaaagaagtctaactatgaagtattagaaaaagatgttggtttaaagcgattttttcctaagagtttactggattctgtcaaggccaaaacactaagaaaactgatccaacaaacatttagacaatttgccaaccttaatagagaagaaagtattctgaaattctttgagatcctgtctccagtctacagatttgataaggaatgcttcaagtgtgctcttggttcaagctggattatttcagtggaactggcaatcggcccagaagaaggaatcagttacctaacggacaagggctgcaatcccacacatcttgctgacttcactcaagtgcaaaccattcagtattcaaacagtgaagacaaggacagaaaaggaatgctacaactaaaaatagcaggtgcacccgagcctctgacagtgacggcaccatccctaaccattgcggagaatatggctgacctaatagatgggtactgccggctggtgaatggaacctcgcagtcatttatcatcagacctcagaaagaaggtgaacgggctttgccatcaataccaaagttggccaacagcgaaaagcaaggcatgcggacacacgccgtctctgtgtcagaaacagatgattatgctgagattatagatgaagaagatacttacaccatgccctcaaccagggattatgagattcaaagagaaagaatagaacttggacgatgtattggagaaggccaatttggagatgtacatcaaggcatttatatgagtccagagaatccagctttggcggttgcaattaaaacatgtaaaaactgtacttcggacagcgtgagagagaaatttcttcaagaagccttaacaatgcgtcagtttgaccatcctcatattgtgaagctgattggagtcatcacagagaatcctgtctggataatcatggagctgtgcacacttggagagctgaggtcatttttgcaagtaaggaaatacagtttggatctagcatctttgatcctgtatgcctatcagcttagtacagctcttgcatatctagagagcaaaagatttgtacacagggacattgctgctcggaatgttctggtgtcctcaaatgattgtgtaaaattaggagactttggattatcccgatatatggaagatagtacttactacaaagcttccaaaggaaaattgcctattaaatggatggctccagagtcaatcaattttcgacgttttacctcagctagtgacgtatggatgtttggtgtgtgtatgtgggagatactgatgcatggtgtgaagccttttcaaggagtgaagaacaatgatgtaatcggtcgaattgaaaatggggaaagattaccaatgcctccaaattgtcctcctaccctctacagccttatgacgaaatgctgggcctatgaccccagcaggcggcccaggtttactgaacttaaagctcagctcagcacaatcctggaggaagagaaggctcagcaagaagagcgcatgaggatggagtccagaagacaggccacagtgtcctgggactccggagggtctgatgaagcaccgcccaagcccagcagaccgggttatcccagtccgaggtccagcgaaggattttatcccagcccacagcacatggtacaaaccaatcattaccaggtttctggctaccctggttcacatggaatcacagccatggctggcagcatctatccaggtcaggcatctcttttggaccaaacagattcatggaatcatagacctcaggagatagcaatgtggcagcccaatgtggaggactctacagtattggacctgcgagggattgggcaagtgttgccaacccatctgatggaagagcgtctaatccgacagcaacaggaaatggaagaagatcagcgctggctggaaaaagaggaaagatttctgACCAATTCCTTCCTAACCTGGATTCCACTGTCCTTGGTGAAAACTACTTTGATGGAACCTACCAGATGCTTTATCTTTTGGTTAAAGGAACTATACCTGTTGAAATTCACACTGCCACAGTGATATTTGTTTCTTTCCAATTATCTGTTGCAACAGAAGATGACTTTTATACCTCTCACAATCTGGTTAAAAATCTTGCCTTGTTCCTAAAGATACCAAGTGACAAAATCCGTATCAGCAAAATAAGAGGGAAGAGTCTGAGGAGGAAGAGATCCATGGGATTCATAATTGAAATAGAGATTGGAGACCCTCCTATTCAGTTCATAAGCAATGGCACCACAGGTCAGATGCAGTTATCTGAACTCCAGGAAATTGCTGGTTCTCTTGGACAAGCTGTAATTTTAGGAAACATCAGTAGTATCCTTGGATTTAACATTTCGTCCATGTCTATTACTAATCCCCTCCCCAGCCCAAGTGACTCTGGGTGGATTAAGGTGACTGCCCAGCCAGTTGAAAGGTCTGCATTTCCTGTTCATCACGTGGCCTTCGTGTCCTCACTCTTAGTGATCACTCAGCCGGTGGCAGCACAGCCAGGACAGCCATTTCCTCAGCAGCCTTCGGTAAAGGCAACAGATTCTGACGGTAACTGTGTATCAGTTGGAATTACTGCACTAACTTTGAGGGCCATACTCAAGGACTCCAATAATAACCAAGTCAATGGCCTTAGTGGAAATACAACAATTCCGTTTAGCAGCTGTTGGGCCAACTACACAGACCTTACTCCCCTTAGAACAGGAAAAAATTATAAGATTGAATTTATACTGGATAATGTTGTTGGGGTAGAATCCAGAACTTTCAGCCTGCTGGCAGAGTCTGTCTCTAGCAGTGGCAGCAGCAGCAGCAGCAACAGCAAAGCATCAACTGTGGGTACATATGCCCAGATAATGACTGTAGTAATTAGCTGTCTGGTTGGAAGAATGTGGCTCTTGGAAATATTTATGGCTGCAGTTTCAACTTTGAATATAACTTTAAGAAGCTACTAA MLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLTNSFLTWIPLSLVKTTLMEPTRCFIFWLKELYLLKFTLPQ*YLFLSNYLLQQKMTFIPLTIWLKILPCS*RYQVTKSVSAK*EGRV*GGRDPWDS*LK*RLETLLFSS*AMAPQVRCSYLNSRKLLVLLDKL*F*ETSVVSLDLTFRPCLLLIPSPAQVTLGGLR*LPSQLKGLHFLFITWPSCPHS**SLSRWQHSQDSHFLSSLR*RQQILTVTVYQLELLH*L*GPYSRTPIITKSMALVEIQQFRLAAVGPTTQTLLPLEQEKIIRLNLYWIMLLG*NPELSACWQSLSLAVAAAAAATAKHQLWVHMPR**L**LAVWLEECGSWKYLWLQFQL*I*L*EAT FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE FALSE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31024 RAP2A::PCDH9-AS1 ENSG00000125249.7::ENSG00000234527.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RAP2A ENSG00000125249.7 protein_coding + + chr13:97434169-97469128:+ chr13:97434784:+ chr13:98086423-98121382:+ chr13:98087038:+ PCDH9-AS1 ENSG00000234527.1 lncRNA + + chr13:66303871-66323561:+ chr13:66323174:+ chr13:66878003-66897693:+ chr13:66897306:+ chr13:97439058 chr13:66303954 NA NA chr13:98091312 chr13:66878086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RAP2A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:31.11Mb] 72 75 72 75 ONLY_REF_SPLICE YES_LDAS 1.587 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31026 CAPZB::LINC02241 ENSG00000077549.19::ENSG00000251629.7 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CAPZB ENSG00000077549.19 protein_coding - - chr1:19338775-19485539:- chr1:19485436:- chr1:19665269-19812033:- chr1:19811930:- LINC02241 ENSG00000251629.7 lncRNA + + chr5:20611806-20937800:+ chr5:20895483:+ chr5:20611915-20937909:+ chr5:20895592:+ chr1:19479717,chr1:19479719 chr5:20893337,chr5:20893335 NA NA chr1:19806211,chr1:19806213 chr5:20893446,chr5:20893444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 57 1 57 1 ONLY_REF_SPLICE YES_LDAS 0.6262 GT 1.6402 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31027 JADE2::UBE2B ENSG00000043143.22::ENSG00000119048.9 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1350 FALSE NA FALSE NA JADE2 ENSG00000043143.22 protein_coding + + chr5:134524312-134583230:+ chr5:134538083:+ chr5:133860003-133918920:+ chr5:133873773:+ UBE2B ENSG00000119048.9 protein_coding + + chr5:134371184-134392108:+ chr5:134374383:+ chr5:133706875-133727799:+ chr5:133710074:+ chr5:134543167,chr5:134543166 chr5:134373247,chr5:134373243 NA NA chr5:133878857,chr5:133878856 chr5:133708938,chr5:133708934 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EPL1-PARTIAL|20-153~|1.3e-09 UQ_con-PARTIAL|~45-143|1.8e-58^RWD|51-116|6.5e-08^UEV|56-118|1.1e-05 ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.13Mb] 54 50 54 50 ONLY_REF_SPLICE YES_LDAS 1.1228 GT 1.8256 AG 1.9329 ENST00000282605.8 1-153 ENST00000265339.7 45-459 chr5|+|[0]134535858-134535915[0]|[1]134537989-134538083[2]<==>chr5|+|[2]134374383-134374463[1]|[2]134376669-134376694[0]|[1]134380719-134380808[0]|[1]134388325-134388413[2]|[0]134390225-134390353[2] atggaagagaagaggcgaaaatactccatcagcagtgacaactctgacaccactgacagtcatgcgacatctacatccgcatcaagatgctccaaactgcccagcagcaccaagtcgggctggccccgacagaacgaaaagaagccctccgagGTTACAAGAGGACCCACCTGTGGGTGTCAGTGGCGCACCATCTGAAAACAACATCATGCAGTGGAATGCAGTTATATTTGGACCAGAAGGGACACCTTTTGAAGATGGTACTTTTAAACTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCACCAACTGTTAGGTTTTTATCCAAAATGTTTCATCCAAATGTGTATGCTGATGGTAGCATATGTTTAGATATCCTTCAGAATCGATGGAGTCCAACATATGATGTATCTTCTATCTTAACATCAATTCAGTCTCTGCTGGATGAACCGAATCCTAACAGTCCAGCCAATAGCCAGGCAGCACAGCTTTATCAGGAAAACAAACGAGAATATGAGAAAAGAGTTTCGGCCATTGTTGAACAAAGCTGGAATGATTCATAA MEEKRRKYSISSDNSDTTDSHATSTSASRCSKLPSSTKSGWPRQNEKKPSEVTRGPTCGCQWRTI*KQHHAVECSYIWTRRDTF*RWYF*TSNRIF*RISK*TTNC*VFIQNVSSKCVC*W*HMFRYPSESMESNI*CIFYLNINSVSAG*TES*QSSQ*PGSTALSGKQTRI*EKSFGHC*TKLE*FI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Liver,Adrenal exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31032 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36477878:- chr14:36942493-36983034:- chr14:36947083:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:1.60Mb] 24 38 24 28.11 ONLY_REF_SPLICE YES_LDAS 0.5626 GT 1.9899 AG 1.1589 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 31034 XRCC6::ACO2 ENSG00000196419.13::ENSG00000100412.17 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1355 FALSE NA FALSE NA XRCC6 ENSG00000196419.13 protein_coding + + chr22:41621163-41664048:+ chr22:41653690:+ chr22:42017167-42060052:+ chr22:42049694:+ ACO2 ENSG00000100412.17 protein_coding + + chr22:41447830-41529273:+ chr22:41499726:+ chr22:41843834-41925277:+ chr22:41895730:+ chr22:41655990,chr22:41655988 chr22:41491132,chr22:41491120 NA NA chr22:42051994,chr22:42051992 chr22:41887136,chr22:41887124 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ku_N|37-255|1.8e-88^Ku|265-459|1.6e-47^Ku_N|266-307|2.1^Ku_C|472-557|1.4e-32^SAP30_Sin3_bdg|482-490|0.8^SAP|573-607|6.1e-13^SAP30_Sin3_bdg|578-608|1.8e-05 Aconitase|67-279|2.3e-69^Aconitase|303-528|1.8e-72^Aconitase_C|608-736|2.2e-53 ["XRCC6:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.09Mb];LOCAL_REARRANGEMENT:+:[92130] 19 16 19 12.54 ONLY_REF_SPLICE YES_LDAS 0.3405 GT 1.9656 AG 1.8892 ENST00000360079.8 1-1291 ENST00000678269.1 37-2418 chr22|+|[0]41622005-41622086[0]|[1]41628118-41628230[2]|[0]41636113-41636251[0]|[1]41636516-41636770[0]|[1]41637608-41637791[1]|[2]41646896-41647082[2]|[0]41650723-41650891[0]|[1]41653529-41653690[0]<==>chr22|+|[0]41499726-41499862[1]|[2]41507791-41508049[2]|[0]41511876-41511968[2]|[0]41515377-41515535[2]|[0]41515767-41515992[0]|[1]41517527-41517631[0]|[1]41518481-41518572[2]|[0]41520171-41520276[0]|[1]41522830-41522987[2]|[0]41523205-41523278[1]|[2]41523830-41523941[2]|[0]41524846-41524968[2]|[0]41525193-41525348[2]|[0]41526262-41526453[2]|[0]41527288-41527420[0]|[1]41527901-41528022[2]|[0]41528479-41528613[2] atgtcagggtgggagtcatattacaaaaccgagggcgatgaagaagcagaggaagaacaagaagagaaccttgaagcaagtggagactataaatattcaggaagagatagtttgatttttttggttgatgcctccaaggctatgtttgaatctcagagtgaagatgagttgacaccttttgacatgagcatccagtgtatccaaagtgtgtacatcagtaagatcataagcagtgatcgagatctcttggctgtggtgttctatggtaccgagaaagacaaaaattcagtgaattttaaaaatatttacgtcttacaggagctggataatccaggtgcaaaacgaattctagagcttgaccagtttaaggggcagcagggacaaaaacgtttccaagacatgatgggccacggatctgactactcactcagtgaagtgctgtgggtctgtgccaacctctttagtgatgtccaattcaagatgagtcataagaggatcatgctgttcaccaatgaagacaacccccatggcaatgacagtgccaaagccagccgggccaggaccaaagccggtgatctccgagatacaggcatcttccttgacttgatgcacctgaagaaacctgggggctttgacatatccttgttctacagagatatcatcagcatagcagaggatgaggacctcagggttcactttgaggaatccagcaagctagaagacctgttgcggaaggttcgcgccaaggagaccaggaagcgagcactcagcaggttaaagctgaagctcaacaaagatatagtgatctctgtgggcatttataatctggtccagaaggctctcaagcctcctccaataaagctctatcgggaaacaaatgaaccagtgaaaaccaagacccggacctttaatacaagtacaggcggtttgcttctgcctagcgataccaagaggtctcagatctatgggagtcgtcagattatactggagaaagaggaaacagaagagctaaaacggtttgatgatccaggtttgatgctcatgggtttcaagccgttggtactgctgaagaaacaccattacctgaggccctccctgttcgtgtacccagaggagtcgctggtgattgggagctcaaccctgttcagtgctctgctcatcaagtgtctggagaaggaggttgcagcattgtgcagatacacaccccgcaggaacatccctccttattttgtggctttggtgccacaggaagaagagttggatgaccagaaaattcaggtgactcctccagAAAGCTCTGGGTGTGCGGCAGTACCATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGTGGCGATGAGCCACTTTGAGCCCAACGAGTACATCCATTATGACCTGCTAGAGAAGAACATTAACATTGTTCGCAAACGACTGAACCGGCCGCTGACACTCTCGGAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCCAGGAAATTGAGCGAGGCAAGTCGTACCTGCGGCTGCGGCCGGACCGTGTGGCCATGCAGGATGCGACGGCCCAGATGGCCATGCTCCAGTTCATCAGCAGCGGGCTGTCCAAGGTGGCTGTGCCATCCACCATCCACTGTGACCATCTGATTGAAGCCCAGGTTGGGGGCGAGAAAGACCTGCGCCGGGCCAAGGACATCAACCAGGAAGTTTATAATTTCCTGGCAACTGCAGGTGCCAAATATGGCGTGGGCTTCTGGAAGCCTGGATCTGGAATCATTCACCAGATTATTCTGGAAAACTATGCGTACCCTGGTGTTCTTCTGATTGGCACTGACTCCCACACCCCCAATGGTGGCGGCCTTGGGGGCATCTGCATTGGAGTTGGGGGTGCCGATGCTGTGGATGTCATGGCTGGGATCCCCTGGGAGCTGAAGTGCCCCAAGGTGATTGGCGTGAAGCTGACGGGCTCTCTCTCCGGTTGGTCCTCACCCAAAGATGTGATCCTGAAGGTGGCAGGCATCCTCACGGTGAAAGGTGGCACAGGTGCAATCGTGGAATACCACGGGCCTGGTGTAGACTCCATCTCCTGCACTGGTGAGGAAGGCGGCCAGGCGACGTGGCCCCTACCCTGTGCTGGGCCTGATGGGTCTCCAGTTGGGAGTAGAAGCGGCATGGCGACAATCTGCAACATGGGTGCAGAAATTGGGGCCACCACTTCCGTGTTCCCTTACAACCACAGGATGAAGAAGTACCTGAGCAAGACCGGCCGGGAAGACATTGCCAATCTAGCTGATGAATTCAAGGATCACTTGGTGCCTGACCCTGGCTGCCATTATGACCAACTAATTGAAATTAACCTCAGTGAGCTGAAGCCACACATCAATGGGCCCTTCACCCCTGACCTGGCTCACCCTGTGGCAGAAGTGGGCAAGGTGGCAGAGAAGGAAGGATGGCCTCTGGACATCCGAGTGGGTCTAATTGGTAGCTGCACCAATTCAAGCTATGAAGATATGGGGCGCTCAGCAGCTGTGGCCAAGCAGGCACTGGCCCATGGCCTCAAGTGCAAGTCCCAGTTCACCATCACTCCAGGTTCCGAGCAGATCCGCGCCACCATTGAGCGGGACGGCTATGCACAGATCTTGAGGGATCTGGGTGGCATTGTCCTGGCCAATGCTTGTGGCCCCTGCATTGGCCAGTGGGACAGGAAGGACATCAAGAAGGGGGAGAAGAACACAATCGTCACCTCCTACAACAGGAACTTCACGGGCCGCAACGACGCAAACCCCGAGACCCATGCCTTTGTCACGTCCCCAGAGATTGTCACAGCCCTGGCCATTGCGGGAACCCTCAAGTTCAACCCAGAGACCGACTACCTGACGGGCACGGATGGCAAGAAGTTCAGGCTGGAGGCTCCGGATGCAGATGAGCTTCCCAAAGGGGAGTTTGACCCAGGGCAGGACACCTACCAGCACCCACCCAAGGACAGCAGCGGGCAGCATGTGGACGTGAGCCCCACCAGCCAGCGCCTGCAGCTCCTGGAGCCTTTTGACAAGTGGGATGGCAAGGACCTGGAGGACCTGCAGATCCTCATCAAGGTCAAAGGGAAGTGTACCACTGACCACATCTCAGCTGCTGGCCCCTGGCTCAAGTTCCGTGGGCACTTGGATAACATCTCCAACAACCTGCTCATTGGTGCCATCAACATTGAAAACGGCAAGGCCAACTCCGTGCGCAATGCCGTCACTCAGGAGTTTGGCCCCGTCCCTGACACTGCCCGCTACTACAAGAAACATGGCATCAGGTGGGTGGTGATCGGAGACGAGAACTACGGCGAGGGCTCGAGCCGGGAGCATGCAGCTCTGGAGCCTCGCCACCTTGGGGGCCGGGCCATCATCACCAAGAGCTTTGCCAGGATCCACGAGACCAACCTGAAGAAACAGGGCCTGCTGCCTCTGACCTTCGCTGACCCGGCTGACTACAACAAGATTCACCCTGTGGACAAGCTGACCATTCAGGGCCTGAAGGACTTCACCCCTGGCAAGCCCCTGAAGTGCATCATCAAGCACCCCAACGGGACCCAGGAGACCATCCTCCTGAACCACACCTTCAACGAGACGCAGATTGAGTGGTTCCGCGCTGGCAGTGCCCTCAACAGAATGAAGGAACTGCAACAGTGA MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPESSGCAAVPCGLSPVPTGQGGDEPL*AQRVHPL*PAREEH*HCSQTTEPAADTLGEDCVWTPG*PRQPGN*ARQVVPAAAAGPCGHAGCDGPDGHAPVHQQRAVQGGCAIHHPL*PSD*SPGWGRERPAPGQGHQPGSL*FPGNCRCQIWRGLLEAWIWNHSPDYSGKLCVPWCSSDWH*LPHPQWWRPWGHLHWSWGCRCCGCHGWDPLGAEVPQGDWREADGLSLRLVLTQRCDPEGGRHPHGERWHRCNRGIPRAWCRLHLLHW*GRRPGDVAPTLCWA*WVSSWE*KRHGDNLQHGCRNWGHHFRVPLQPQDEEVPEQDRPGRHCQSS**IQGSLGA*PWLPL*PTN*N*PQ*AEATHQWALHP*PGSPCGRSGQGGREGRMASGHPSGSNW*LHQFKL*RYGALSSCGQAGTGPWPQVQVPVHHHSRFRADPRHH*AGRLCTDLEGSGWHCPGQCLWPLHWPVGQEGHQEGGEEHNRHLLQQELHGPQRRKPRDPCLCHVPRDCHSPGHCGNPQVQPRDRLPDGHGWQEVQAGGSGCR*ASQRGV*PRAGHLPAPTQGQQRAACGREPHQPAPAAPGAF*QVGWQGPGGPADPHQGQREVYH*PHLSCWPLAQVPWALG*HLQQPAHWCHQH*KRQGQLRAQCRHSGVWPRP*HCPLLQETWHQVGGDRRRELRRGLEPGACSSGASPPWGPGHHHQELCQDPRDQPEETGPAASDLR*PG*LQQDSPCGQADHSGPEGLHPWQAPEVHHQAPQRDPGDHPPEPHLQRDAD*VVPRWQCPQQNEGTATV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31035 BAZ1A::SFTA3 ENSG00000198604.11::ENSG00000229415.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2410 TRUE 932 BAZ1A ENSG00000198604.11 protein_coding - - chr14:34752731-34875647:- chr14:34771511:- chr14:35221937-35344853:- chr14:35240717:- SFTA3 ENSG00000229415.10 lncRNA - - chr14:36473288-36513829:- chr14:36477103:- chr14:36942493-36983034:- chr14:36946308:- chr14:34769269 chr14:36479733 NA NA chr14:35238475 chr14:36948938 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:1.60Mb] 17 25 17 6.94 ONLY_REF_SPLICE YES_LDAS 0.2584 GT 1.9899 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Bromodomain adjacent to zinc finger domain protein 1A Atypical BAZ Q9NRL2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE bromodomain adjacent to zinc finger domain 1A 2 uterine carcinosarcoma, colon cancer epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 31039 PDS5B::ENSG00000288015 ENSG00000083642.19::ENSG00000288015.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2420 TRUE 938 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32648880:+ chr13:33160589-33352157:+ chr13:33223017:+ ENSG00000288015 ENSG00000288015.1 lncRNA - - chr13:59121879-59230636:- chr13:59138250:- chr13:59696013-59804770:- chr13:59712384:- chr13:32650766,chr13:32650759 chr13:59212072,chr13:59212071 NA NA chr13:33224903,chr13:33224896 chr13:59786206,chr13:59786205 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDS5B:Oncogene"] 15 12 15 7.53 ONLY_REF_SPLICE YES_LDAS 0.2432 GT 1.7819 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31040 PPIEL::INPP5B ENSG00000291129.1::ENSG00000204084.14 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1359 FALSE NA FALSE NA PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39541720:- chr1:39987952-40025370:- chr1:40007392:- INPP5B ENSG00000204084.14 protein_coding - - chr1:37860697-37947053:- chr1:37891454:- chr1:38326369-38412725:- chr1:38357126:- chr1:39531061,chr1:39531062,chr1:39531066,chr1:39531068,chr1:39531064 chr1:37910184,chr1:37910184,chr1:37910184,chr1:37910185,chr1:37910184 NA NA chr1:39996733,chr1:39996734,chr1:39996738,chr1:39996740,chr1:39996736 chr1:38375856,chr1:38375856,chr1:38375856,chr1:38375857,chr1:38375856 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.58Mb] 15 8 15 8 ONLY_REF_SPLICE YES_LDAS 0.2483 GT 1.7465 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31043 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:5.10Mb] 13 11 13 9.64 ONLY_REF_SPLICE YES_LDAS 0.2444 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31045 ELOVL6::ENPEP ENSG00000170522.10::ENSG00000138792.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1352 TRUE 2414 TRUE 935 ELOVL6 ENSG00000170522.10 protein_coding - - chr4:110045846-110199199:- chr4:110198247:- chr4:110967002-111120355:- chr4:111119403:- ENPEP ENSG00000138792.10 protein_coding + + chr4:110365733-110565285:+ chr4:110476612:+ chr4:111286889-111486441:+ chr4:111397768:+ chr4:110150649 chr4:110442756 NA NA chr4:111071805 chr4:111363912 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ELO-PARTIAL|25-89~|4.3e-76 ERAP1_C-PARTIAL|~198-211|0.36^Peptidase_M1_N-PARTIAL|~198-286|2.8e-63^DUF1570-PARTIAL|~198-220|3.6^Peptidase_M1|321-538|6.8e-93^DUF1570|387-424|5.6e-05^ERAP1_C|616-933|1.5e-90^DUF1570|660-687|0.92 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.17Mb] 12 21 12 16 INCL_NON_REF_SPLICE YES_LDAS 0.3022 GT 1.8323 AG 1.5546 ENST00000394607.7 1-89 ENST00000265162.10 198-2874 chr4|-|[1]110198247-110198335[0]<==>chr4|+|[2]110476612-110477058[1]|[2]110488541-110488682[2]|[0]110491033-110491164[2]|[0]110506637-110506757[0]|[1]110509653-110509807[2]|[0]110510245-110510358[2]|[0]110513415-110513549[2]|[0]110515377-110515442[2]|[0]110520008-110520073[2]|[0]110520215-110520366[1]|[2]110531198-110531277[0]|[1]110542751-110542887[2]|[0]110543015-110543070[1]|[2]110548176-110548326[2]|[0]110549346-110549419[1]|[2]110549528-110549632[1]|[2]110549716-110549886[1]|[2]110553315-110553455[1]|[2]110559647-110559725[2]|[0]110561406-110561558[2] atgaacatgtcagtgttgactttacaagaatatgaattcgaaaagcagttcaacgagaatgaagccatccaatggatgcaggaaaactgCCCCTCAGGTCCTCCTGCCCAGGACCAGGACATCTGCCCGGCCAGTGAGGATGAGAGCGGACAGTGGAAAAACTTTCGACTGCCGGACTTCGTCAACCCAGTCCACTACGACCTGCACGTGAAGCCCCTGTTGGAGGAGGACACCTACACGGGCACCGTGAGCATCTCCATCAACCTGAGCGCTCCCACCCGGTACCTGTGGCTGCACCTCCGGGAGACCAGGATCACCCGGCTCCCGGAGCTGAAGAGGCCCTCTGGGGACCAGGTGCAAGTCCGGAGGTGTTTCGAGTACAAAAAGCAGGAGTACGTGGTGGTCGAGGCGGAGGAAGAGCTTACCCCCAGCAGTGGAGATGGCCTGTATCTCCTGACCATGGAGTTCGCCGGCTGGCTGAACGGCTCCCTCGTGGGATTTTATAGAACCACCTACACGGAGAACGGACAAGTCAAGAGCATAGTGGCCACCGATCATGAACCAACAGATGCCAGGAAATCTTTTCCTTGTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCACCCATCCCAAAGAATACGGAGCACTTTCAAATATGCCAGTGGCGAAAGAAGAGTCAGTGGATGATAAATGGACTCGAACAACTTTTGAGAAGTCTGTCCCCATGAGCACGTACCTGGTGTGCTTTGCTGTACATCAATTTGACTCTGTAAAGAGAATATCAAATAGTGGAAAACCTCTTACAATTTATGTCCAGCCAGAGCAAAAGCACACAGCCGAATATGCTGCAAACATAACTAAAAGTGTGTTTGATTATTTTGAAGAATACTTTGCTATGAATTATTCTCTTCCTAAATTAGATAAAATCGCTATTCCAGATTTTGGCACTGGTGCCATGGAGAACTGGGGACTCATCACGTACAGAGAAACGAACCTGCTTTATGACCCTAAGGAATCAGCCTCATCAAACCAACAGAGGGTGGCCACTGTGGTTGCCCATGAACTTGTGCATCAGTGGTTTGGAAATATTGTGACCATGGACTGGTGGGAAGACTTGTGGCTAAATGAAGGATTTGCTTCTTTCTTTGAGTTTCTGGGAGTAAACCATGCAGAAACAGACTGGCAAATGCGTGACCAAATGTTACTTGAAGATGTATTACCTGTTCAAGAGGATGATTCTTTGATGTCTTCGCATCCAATTATTGTGACTGTGACAACCCCTGATGAAATAACATCTGTTTTTGATGGAATATCCTATAGCAAGGGATCTTCTATTTTGAGAATGCTTGAAGACTGGATAAAACCAGAGAATTTTCAAAAAGGATGTCAGATGTACTTGGAAAAATACCAATTCAAGAATGCAAAAACTTCTGATTTTTGGGCAGCACTGGAAGAGGCAAGTAGGCTACCAGTGAAAGAAGTAATGGACACCTGGACCAGACAGATGGGTTATCCTGTGCTTAACGTGAACGGTGTCAAGAACATCACACAGAAACGCTTTTTGTTGGACCCAAGAGCTAACCCTTCTCAGCCCCCTTCAGATCTTGGTTATACATGGAATATCCCAGTTAAATGGACTGAAGATAATATAACAAGCAGTGTGTTATTTAATAGGTCAGAAAAAGAAGGAATCACTTTGAACTCCTCTAATCCTAGTGGAAATGCTTTTCTCAAAATAAACCCAGATCATATTGGGTTTTATCGTGTAAATTATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCTCTCCTTGAACCACAAGACATTTTCTTCAGCAGATCGTGCAAGTCTTATTGATGATGCTTTTGCCTTGGCAAGAGCTCAACTTCTAGATTATAAGGTGGCTTTGAACTTGACCAAGTATCTCAAAAGGGAAGAGAATTTTTTACCATGGCAGAGAGTAATTTCAGCTGTAACCTACATCATTAGCATGTTTGAAGATGATAAAGAGCTATATCCTATGATTGAGGAATACTTCCAAGGTCAAGTGAAGCCTATTGCAGATTCTCTGGGATGGAATGATGCTGGAGACCATGTCACAAAGTTACTCCGTTCCTCCGTGTTAGGGTTTGCGTGCAAGATGGGAGACAGAGAAGCCTTGAACAATGCTTCCTCGTTATTTGAGCAGTGGCTAAATGGGACTGTAAGCCTTCCCGTAAATCTCAGGCTTCTGGTGTATCGGTATGGGATGCAGAACTCTGGCAATGAGATTTCATGGAACTACACTCTTGAGCAATACCAGAAAACTTCATTAGCTCAAGAAAAAGAAAAACTGCTGTATGGATTAGCATCAGTGAAGAACGTTACTCTTTTGTCAAGGTATTTGGATTTGCTCAAGGACACGAACCTTATTAAAACTCAGGATGTGTTTACAGTCATTCGATATATCTCATATAACAGCTATGGGAAGAACATGGCCTGGAATTGGATACAACTCAACTGGGACTATCTAGTCAACAGATATACACTCAATAACAGAAACCTTGGCCGAATTGTCACAATAGCAGAGCCATTCAACACTGAACTGCAACTGTGGCAGATGGAGAGCTTTTTTGCAAAATATCCACAAGCTGGAGCAGGAGAAAAACCTAGGGAACAAGTGCTGGAAACAGTGAAAAACAATATAGAGTGGCTAAAACAACATAGAAACACCATCAGAGAATGGTTTTTTAATTTACTTGAGAGTGGTTAA MNMSVLTLQEYEFEKQFNENEAIQWMQENCPSGPPAQDQDICPASEDESGQWKNFRLPDFVNPVHYDLHVKPLLEEDTYTGTVSISINLSAPTRYLWLHLRETRITRLPELKRPSGDQVQVRRCFEYKKQEYVVVEAEEELTPSSGDGLYLLTMEFAGWLNGSLVGFYRTTYTENGQVKSIVATDHEPTDARKSFPCFDEPNKKATYTISITHPKEYGALSNMPVAKEESVDDKWTRTTFEKSVPMSTYLVCFAVHQFDSVKRISNSGKPLTIYVQPEQKHTAEYAANITKSVFDYFEEYFAMNYSLPKLDKIAIPDFGTGAMENWGLITYRETNLLYDPKESASSNQQRVATVVAHELVHQWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEEASRLPVKEVMDTWTRQMGYPVLNVNGVKNITQKRFLLDPRANPSQPPSDLGYTWNIPVKWTEDNITSSVLFNRSEKEGITLNSSNPSGNAFLKINPDHIGFYRVNYEVATWDSIATALSLNHKTFSSADRASLIDDAFALARAQLLDYKVALNLTKYLKREENFLPWQRVISAVTYIISMFEDDKELYPMIEEYFQGQVKPIADSLGWNDAGDHVTKLLRSSVLGFACKMGDREALNNASSLFEQWLNGTVSLPVNLRLLVYRYGMQNSGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDTNLIKTQDVFTVIRYISYNSYGKNMAWNWIQLNWDYLVNRYTLNNRNLGRIVTIAEPFNTELQLWQMESFFAKYPQAGAGEKPREQVLETVKNNIEWLKQHRNTIREWFFNLLESG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31047 PTK2::PKHD1L1 ENSG00000169398.20::ENSG00000205038.12 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4819 TRUE 1800 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140700891:- chr8:141667999-142012315:- chr8:141710990:- PKHD1L1 ENSG00000205038.12 protein_coding + + chr8:109362461-109537207:+ chr8:109518379:+ chr8:110374690-110549436:+ chr8:110530608:+ chr8:140695968,chr8:140695985 chr8:109517152,chr8:109517135 NA NA chr8:141706067,chr8:141706084 chr8:110529381,chr8:110529364 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FERM_N_2|79-174|5.1e-44^FERM_M|180-292|4.9e-16^FERM_F2|184-277|3.3e-06^UCMA|188-238|0.02^FERM_C_FAK1|304-401|1.1e-43^PK_Tyr_Ser-Thr|466-720|2.9e-100^Pkinase|468-718|2.3e-49^FERM_M|495-521|1.9^Haspin_kinase|536-615|1.3e-06^ABC1|541-620|0.0002^Kinase-like|544-659|6.8e-07^FERM_M|564-590|5.8^UCMA|705-738|0.011^Focal_AT|958-1089|4.7e-62^ABC1|992-1052|1.7^FERM_M|1049-1063|9.6^FERM_C_FAK1|1050-1084|0.94 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:31.13Mb] 10 9 10 0.67 INCL_NON_REF_SPLICE YES_LDAS 0.1152 GT 1.8256 AG 1.7232 ENST00000519419.5 1-2631 ENST00000526472.1 2686-3516 chr8|-|[2]140700891-140701022[0]|[2]140702570-140702707[0]|[2]140706119-140706205[0]|[2]140717598-140717709[2]|[1]140735251-140735455[1]|[0]140739018-140739107[1]|[0]140743230-140743330[2]|[1]140744652-140744767[0]|[2]140746760-140746860[1]|[0]140752232-140752316[0]|[2]140761165-140761262[1]|[0]140764234-140764290[1]|[0]140789474-140789526[2]|[1]140793354-140793384[1]|[0]140800459-140800576[0]|[2]140803543-140803650[0]|[2]140818277-140818354[0]|[2]140818880-140819020[0]|[2]140830472-140830526[2]|[1]140846260-140846322[2]|[1]140846599-140846678[0]|[2]140864312-140864399[2]|[1]140879471-140879637[0]|[2]140890543-140890769[1]|[0]140920814-140920913[0]<==>chr8|+|[0]109518379-109518508[0]|[1]109522186-109522337[2]|[0]109522744-109522890[2]|[0]109523233-109523386[0]|[1]109526784-109527020[0]|[1]109530080-109530090[2] atgttgttggaactggcaggccaagaggccctgaaaccagcaggtgccatctatatggagaaaagcggatgtagtccatttccagtgtgttgggctaaagaatatgacagatacctagcatctagcaaaataatggcagctgcttaccttgaccccaacttgaatcacacaccaaattcgagtactaagactcacctgggtactggtatggaacgttctcctggtgcaatggagcgagtattaaaggtctttcattattttgaaagcaatagtgagccaaccacctgggccagtattatcaggcatggagatgctactgatgtcaggggcatcattcagaagatagtggacagtcacaaagtaaagcatgtggcctgctatggattccgcctcagtcacctgcggtcagaggaggttcactggcttcacgtggatatgggcgtctccagtgtgagggagaagtatgagcttgctcacccaccagaggagtggaaatatgaattgagaattcgttatttgccaaaaggatttctaaaccagtttactgaagataagccaactttgaatttcttctatcaacaggtgaagagcgattatatgttagagatagctgatcaagtggaccaggaaattgctttgaagttgggttgtctagaaatacggcgatcatactgggagatgcggggcaatgcactagaaaagaagtctaactatgaagtattagaaaaagatgttggtttaaagcgattttttcctaagagtttactggattctgtcaaggccaaaacactaagaaaactgatccaacaaacatttagacaatttgccaaccttaatagagaagaaagtattctgaaattctttgagatcctgtctccagtctacagatttgataaggaatgcttcaagtgtgctcttggttcaagctggattatttcagtggaactggcaatcggcccagaagaaggaatcagttacctaacggacaagggctgcaatcccacacatcttgctgacttcactcaagtgcaaaccattcagtattcaaacagtgaagacaaggacagaaaaggaatgctacaactaaaaatagcaggtgcacccgagcctctgacagtgacggcaccatccctaaccattgcggagaatatggctgacctaatagatgggtactgccggctggtgaatggaacctcgcagtcatttatcatcagacctcagaaagaaggtgaacgggctttgccatcaataccaaagttggccaacagcgaaaagcaaggcatgcggacacacgccgtctctgtgtcagaaacagatgattatgctgagattatagatgaagaagatacttacaccatgccctcaaccagggattatgagattcaaagagaaagaatagaacttggacgatgtattggagaaggccaatttggagatgtacatcaaggcatttatatgagtccagagaatccagctttggcggttgcaattaaaacatgtaaaaactgtacttcggacagcgtgagagagaaatttcttcaagaagccttaacaatgcgtcagtttgaccatcctcatattgtgaagctgattggagtcatcacagagaatcctgtctggataatcatggagctgtgcacacttggagagctgaggtcatttttgcaagtaaggaaatacagtttggatctagcatctttgatcctgtatgcctatcagcttagtacagctcttgcatatctagagagcaaaagatttgtacacagggacattgctgctcggaatgttctggtgtcctcaaatgattgtgtaaaattaggagactttggattatcccgatatatggaagatagtacttactacaaagcttccaaaggaaaattgcctattaaatggatggctccagagtcaatcaattttcgacgttttacctcagctagtgacgtatggatgtttggtgtgtgtatgtgggagatactgatgcatggtgtgaagccttttcaaggagtgaagaacaatgatgtaatcggtcgaattgaaaatggggaaagattaccaatgcctccaaattgtcctcctaccctctacagccttatgacgaaatgctgggcctatgaccccagcaggcggcccaggtttactgaacttaaagctcagctcagcacaatcctggaggaagagaaggctcagcaagaagagcgcatgaggatggagtccagaagacaggccacagtgtcctgggactccggagggtctgatgaagcaccgcccaagcccagcagaccgggttatcccagtccgaggtccagcgaaggattttatcccagcccacagcacatggtacaaaccaatcattaccaggtttctggctaccctggttcacatggaatcacagccatggctggcagcatctatccaggtcaggcatctcttttggaccaaacagattcatggaatcatagacctcaggagatagcaatgtggcagcccaatgtggaggactctacagtattggacctgcgagggattgggcaagtgttgccaacccatctgatggaagagcgtctaatccgacagcaacaggaaatggaagaagatcagcgctggctggaaaaagaggaaagatttctgATACCAAGTGACAAAATCCGTATCAGCAAAATAAGAGGGAAGAGTCTGAGGAGGAAGAGATCCATGGGATTCATAATTGAAATAGAGATTGGAGACCCTCCTATTCAGTTCATAAGCAATGGCACCACAGGTCAGATGCAGTTATCTGAACTCCAGGAAATTGCTGGTTCTCTTGGACAAGCTGTAATTTTAGGAAACATCAGTAGTATCCTTGGATTTAACATTTCGTCCATGTCTATTACTAATCCCCTCCCCAGCCCAAGTGACTCTGGGTGGATTAAGGTGACTGCCCAGCCAGTTGAAAGGTCTGCATTTCCTGTTCATCACGTGGCCTTCGTGTCCTCACTCTTAGTGATCACTCAGCCGGTGGCAGCACAGCCAGGACAGCCATTTCCTCAGCAGCCTTCGGTAAAGGCAACAGATTCTGACGGTAACTGTGTATCAGTTGGAATTACTGCACTAACTTTGAGGGCCATACTCAAGGACTCCAATAATAACCAAGTCAATGGCCTTAGTGGAAATACAACAATTCCGTTTAGCAGCTGTTGGGCCAACTACACAGACCTTACTCCCCTTAGAACAGGAAAAAATTATAAGATTGAATTTATACTGGATAATGTTGTTGGGGTAGAATCCAGAACTTTCAGCCTGCTGGCAGAGTCTGTCTCTAGCAGTGGCAGCAGCAGCAGCAGCAACAGCAAAGCATCAACTGTGGGTACATATGCCCAGATAATGACTGTAGTAATTAGCTGTCTGGTTGGAAGAATGTGGCTCTTGGAAATATTTATGGCTGCAGTTTCAACTTTGAATATAACTTTAAGAAGCTACTAA MLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLIPSDKIRISKIRGKSLRRKRSMGFIIEIEIGDPPIQFISNGTTGQMQLSELQEIAGSLGQAVILGNISSILGFNISSMSITNPLPSPSDSGWIKVTAQPVERSAFPVHHVAFVSSLLVITQPVAAQPGQPFPQQPSVKATDSDGNCVSVGITALTLRAILKDSNNNQVNGLSGNTTIPFSSCWANYTDLTPLRTGKNYKIEFILDNVVGVESRTFSLLAESVSSSGSSSSSNSKASTVGTYAQIMTVVISCLVGRMWLLEIFMAAVSTLNITLRSY* FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31049 VPS8::AGRN ENSG00000156931.16::ENSG00000188157.15 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1362 FALSE NA FALSE NA VPS8 ENSG00000156931.16 protein_coding + + chr3:184812143-185052614:+ chr3:184886156:+ chr3:184529931-184770402:+ chr3:184603944:+ AGRN ENSG00000188157.15 protein_coding + + chr1:1020120-1056118:+ chr1:1040665:+ chr1:955500-991498:+ chr1:976045:+ chr3:184889657,chr3:184889655 chr1:1038372,chr1:1038367 NA NA chr3:184607445,chr3:184607443 chr1:973752,chr1:973747 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HOIP-UBA|409-464|1.4^zf-RING_UBOX|506-521|6.4^GED|572-611|0.00013^Vps8|614-796|6e-63^Clathrin|657-690|0.018^Clathrin|890-934|0.0072^Vps8|933-945|5.5^Clathrin|1000-1094|1.6e-06^Vps8|1017-1112|0.0032^HOIP-UBA|1060-1110|0.00022^GED|1089-1135|0.99^PHD_4|1253-1309|0.0026^zf-RING_2|1257-1291|8.6e-06^zf-RING_11|1258-1289|4.3e-07^zf-RING_UBOX|1258-1293|5.1e-06^zf-RING_5|1258-1307|1.6e-05^zf-C3HC4|1258-1291|0.00012^PHD|1258-1309|0.00047^zf-C3H2C3|1277-1294|1.7e-05 Kazal_2-PARTIAL|~197-212|1.7e-10^Kazal_1-PARTIAL|~197-212|2.9e-06^CFAI_KAZAL-PARTIAL|~197-207|0.00089^Kazal_2|241-284|9.5e-11^Kazal_1|241-284|1.8e-14^CFAI_KAZAL|243-263|0.019^Laminin_EGF|289-312|9^EGF|290-312|0.13^Kazal_2|309-356|1.6e-09^Kazal_1|312-356|1.1e-08^CFAI_KAZAL|321-347|4.4e-05^Laminin_EGF|358-358|9^EGF|368-386|9^Kazal_2|385-429|1e-15^Kazal_1|388-429|5e-11^CFAI_KAZAL|394-416|0.0044^Laminin_EGF|415-442|4.4^Laminin_EGF|429-452|6.8^EGF|429-451|9^CFAI_KAZAL|448-485|0.00011^Kazal_2|450-494|2.6e-13^Kazal_1|453-494|3e-10^Laminin_EGF|506-525|9^EGF|510-516|9^Kazal_2|514-559|2e-13^Kazal_1|524-559|8.1e-08^CFAI_KAZAL|525-549|0.00044^Laminin_EGF|575-601|4.4^Kazal_2|600-645|2.7e-15^CFAI_KAZAL|609-640|2.9e-05^Kazal_1|610-645|5.1e-09^Laminin_EGF|620-633|5^Laminin_EGF|688-730|9.8e-17^EGF|695-716|1.6^Laminin_EGF|742-779|1.8e-12^EGF|760-770|0.41^Laminin_EGF|786-818|9^EGF|796-820|0.00014^Kazal_2|822-864|5.7e-14^Kazal_1|822-864|2.4e-10^CFAI_KAZAL|823-852|1.4e-07^Laminin_EGF|839-850|4.6^SEA|1041-1130|2.4e-17^Laminin_EGF|1228-1263|0.98^EGF|1228-1258|3.9e-09^Kazal_2|1250-1261|5.1^CFAI_KAZAL|1266-1289|2.6^Laminin_G_1|1295-1425|5.6e-42^Laminin_G_2|1295-1423|6.3e-32^Laminin_G_3|1322-1369|0.00045^EGF|1448-1478|2.1e-08^Laminin_EGF|1457-1481|2.1^Kazal_2|1469-1481|9^EGF|1487-1516|1.5e-06^Laminin_EGF|1491-1520|2.1^Laminin_G_1|1563-1697|1.3e-38^Laminin_G_2|1566-1694|8.7e-25^Laminin_G_3|1583-1695|0.015^EGF|1723-1750|2.1e-07^Laminin_EGF|1729-1753|0.012^Laminin_G_1|1815-1946|2e-41^Laminin_G_2|1815-1941|3.6e-27^Laminin_G_3|1842-1940|0.00035 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr1] 10 8 10 8 ONLY_REF_SPLICE YES_LDAS 0.1944 GT 1.9899 AG 1.7968 ENST00000287546.8 1-1781 ENST00000651234.1 197-5892 chr3|+|[0]184824633-184824785[2]|[0]184826163-184826231[2]|[0]184832689-184832819[1]|[2]184834649-184834742[2]|[0]184838714-184838746[2]|[0]184839698-184839758[0]|[1]184849071-184849195[2]|[0]184849936-184850022[2]|[0]184852500-184852567[1]|[2]184853857-184854010[2]|[0]184854114-184854173[2]|[0]184855711-184855818[2]|[0]184859985-184860065[2]|[0]184862897-184863067[2]|[0]184866876-184866950[2]|[0]184868024-184868059[2]|[0]184868946-184869036[0]|[1]184869482-184869528[2]|[0]184870716-184870805[2]|[0]184886110-184886156[1]<==>chr1|+|[1]1040665-1040880[0]|[1]1041173-1041397[0]|[1]1041478-1041702[0]|[1]1041956-1042162[0]|[1]1043239-1043457[0]|[1]1043538-1043732[0]|[1]1043823-1044023[0]|[1]1044109-1044257[2]|[0]1044334-1044439[0]|[1]1045161-1045277[0]|[1]1045359-1045523[0]|[1]1045733-1045876[0]|[1]1045964-1046088[2]|[0]1046160-1046265[0]|[1]1046397-1046735[0]|[1]1046820-1046957[0]|[1]1047327-1047454[2]|[0]1047573-1047687[0]|[1]1047776-1047895[0]|[1]1048012-1048365[0]|[1]1048867-1049059[1]|[2]1049236-1049451[1]|[2]1049566-1049795[0]|[1]1049903-1050037[0]|[1]1050233-1050329[1]|[2]1050427-1050591[1]|[2]1050726-1050837[2]|[0]1051032-1051043[2]|[0]1051253-1051369[2]|[0]1051453-1051645[0]|[1]1051728-1051815[1]|[2]1051993-1052016[1]|[2]1053461-1053493[1]|[2]1053753-1053977[1]|[2]1054448-1054551[0]|[1]1054824-1054981[2] atggaaaatgaaccagaccatgaaaatgtggaacagagcctctgtgccaagacgagcgaagaagagctgaataagtctttcaatctagaagcttcactttcaaaattctcttacatagatatggacaaggaactggagttcaaaaatgatctgattgatgacaaggagtttgatattcctcaagttgatactcctccaacactggaaagcatactaaatgagactgatgatgaagatgagtcttttattcttgaggatcctacattgttaaacattgatactattgattctcactcctatgatacttcatctgtggcaagctcagatagtggtgacaggaccaacttaaaaaggaagaagaaattacctgattctttttcacttcatggatcagttatgcgccattcacttttgaagggaatttctgcccagatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaattgcagtatccagtctgatagcagtgggtacatctcatggattggctttaatatttggtaaatatcagaatcaagctttgcgactctgtctgggtagcactagtgttggaggtcagtatggcgctatctctgccctcagtatcaacaatgattgctcaagacttctttgtggctttgctaaaggacagatcaccatgtgggatttggccagtggaaaacttctaagatcaataacagatgctcatcctccaggaacagcaatattgcatatcaagtttacagatgatccaactcttgcaatttgcaacgacagcggaggctctgtttttgaattgacatttaagagagtgatgggagtgagaacctgtgaatctagatgtctgttcagtggttccaagggtgaagtctgctgtattgagcctctgcattctaagcctgagttgaaagatcatcccatcacacagttttcattattggccatggcatccttgacaaaaatactggtcattggattgaaaccatccttgaaagtatggatgacttttccctatggccggatggatccttccagtgtgccactgctggcctggcactttgtagcagtacaaaattacgtgaatcccatgcttgccttctgcagaggagatgttgttcattttctattggtaaagagagatgaatctggagcaatacatgttactaagcaaaagcatcttcacctatactatgacctcatcaactttacctggataaattcacgcacagttgtgctcttagacagcgtagagaagttgcatgtgattgatcggcaaacacaagaggaattggagacagtggagatctcagaagttcagctggtctacaatagcagccatttcaaatcactagccactggaggaaatgttagccaggcactggctttggttggagagaaggcttgttatcaatccatcagtagctatggtggtcagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctggagagagagagtggatcatctcctgaaacaagattgtcttacagaagcgttggctcttgcgtggtctttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgccagtaagcgaaaggctattgttgcagaccggatggtagaaatcctattccattatgcagatcgagctctgaaaaagtgcccagaccaaggaaaaatccaagtgatggagcagcattttcaggatatggtgcctgtcatagttgattactgccttctgctgcagcgaaaCGTGCCGGGGAATGCTGTGCGGCTTCGGCGCCGTGTGCGAGCCCAACGCGGAGGGGCCGGGCCGGGCGTCCTGCGTCTGCAAGAAGAGCCCGTGCCCCAGCGTGGTGGCGCCTGTGTGTGGGTCGGACGCCTCCACCTACAGCAACGAATGCGAGCTGCAGCGGGCGCAGTGCAGCCAGCAGCGCCGCATCCGCCTGCTCAGCCGCGGGCCGTGCGGCTCGCGGGACCCCTGCTCCAACGTGACCTGCAGCTTCGGCAGCACCTGTGCGCGCTCGGCCGACGGGCTGACGGCCTCGTGCCTGTGCCCCGCGACCTGCCGTGGCGCCCCCGAGGGGACCGTCTGCGGCAGCGACGGCGCCGACTACCCCGGCGAGTGCCAGCTCCTGCGCCGCGCCTGCGCCCGCCAGGAGAATGTCTTCAAGAAGTTCGACGGCCCTTGTGACCCCTGTCAGGGCGCCCTCCCTGACCCGAGCCGCAGCTGCCGTGTGAACCCGCGCACGCGGCGCCCTGAGATGCTCCTACGGCCCGAGAGCTGCCCTGCCCGGCAGGCGCCAGTGTGTGGGGACGACGGAGTCACCTACGAAAACGACTGTGTCATGGGCCGATCGGGGGCCGCCCGGGGTCTCCTCCTGCAGAAAGTGCGCTCCGGCCAGTGCCAGGGTCGAGACCAGTGCCCGGAGCCCTGCCGGTTCAATGCCGTGTGCCTGTCCCGCCGTGGCCGTCCCCGCTGCTCCTGCGACCGCGTCACCTGTGACGGGGCCTACAGGCCCGTGTGTGCCCAGGACGGGCGCACGTATGACAGTGATTGCTGGCGGCAGCAGGCTGAGTGCCGGCAGCAGCGTGCCATCCCCAGCAAGCACCAGGGCCCGTGTGACCAGGCCCCGTCCCCATGCCTCGGGGTGCAGTGTGCATTTGGGGCGACGTGTGCTGTGAAGAACGGGCAGGCAGCGTGTGAATGCCTGCAGGCGTGCTCGAGCCTCTACGATCCTGTGTGCGGCAGCGACGGCGTCACATACGGCAGCGCGTGCGAGCTGGAGGCCACGGCCTGTACCCTCGGGCGGGAGATCCAGGTGGCGCGCAAAGGACCCTGTGACCGCTGCGGGCAGTGCCGCTTTGGAGCCCTGTGCGAGGCCGAGACCGGGCGCTGCGTGTGCCCCTCTGAATGCGTGGCTTTGGCCCAGCCCGTGTGTGGCTCCGACGGGCACACGTACCCCAGCGAGTGCATGCTGCACGTGCACGCCTGCACACACCAGATCAGCCTGCACGTGGCCTCAGCTGGACCCTGTGAGACCTGTGGAGATGCCGTGTGTGCTTTTGGGGCTGTGTGCTCCGCAGGGCAGTGTGTGTGTCCCCGGTGTGAGCACCCCCCGCCCGGCCCCGTGTGTGGCAGCGACGGTGTCACCTACGGCAGTGCCTGCGAGCTACGGGAAGCCGCCTGCCTCCAGCAGACACAGATCGAGGAGGCCCGGGCAGGGCCGTGCGAGCAGGCCGAGTGCGGTTCCGGAGGCTCTGGCTCTGGGGAGGACGGTGACTGTGAGCAGGAGCTGTGCCGGCAGCGCGGTGGCATCTGGGACGAGGACTCGGAGGACGGGCCGTGTGTCTGTGACTTCAGCTGCCAGAGTGTCCCAGGCAGCCCGGTGTGCGGCTCAGATGGGGTCACCTACAGCACCGAGTGTGAGCTGAAGAAGGCCAGGTGTGAGTCACAGCGAGGGCTCTACGTAGCGGCCCAGGGAGCCTGCCGAGGCCCCACCTTCGCCCCGCTGCCGCCTGTGGCCCCCTTACACTGTGCCCAGACGCCCTACGGCTGCTGCCAGGACAATATCACCGCAGCCCGGGGCGTGGGCCTGGCTGGCTGCCCCAGTGCCTGCCAGTGCAACCCCCATGGCTCTTACGGCGGCACCTGTGACCCAGCCACAGGCCAGTGCTCCTGCCGCCCAGGTGTGGGGGGCCTCAGGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTTCGAGGCATCGTCACCGATGGCCGGAGTGGCTGTACACCCTGCAGCTGTGATCCCCAAGGCGCCGTGCGGGATGACTGTGAGCAGATGACGGGGCTGTGCTCGTGTAAGCCCGGGGTGGCTGGACCCAAGTGTGGGCAGTGTCCAGACGGCCGTGCCCTGGGCCCCGCGGGCTGTGAAGCTGACGCTTCTGCGCCTGCGACCTGTGCGGAGATGCGCTGTGAGTTCGGTGCGCGGTGCGTGGAGGAGTCTGGCTCAGCCCACTGTGTCTGCCCGATGCTCACCTGTCCAGAGGCCAACGCTACCAAGGTCTGTGGGTCAGATGGAGTCACATACGGCAACGAGTGTCAGCTGAAGACCATCGCCTGCCGCCAGGGCCTGCAAATCTCTATCCAGAGCCTGGGCCCGTGCCAGGAGGCTGTTGCTCCCAGCACTCACCCGACATCTGCCTCCGTGACTGTGACCACCCCAGGGCTCCTCCTGAGCCAGGCACTGCCGGCCCCCCCCGGCGCCCTCCCCCTGGCTCCCAGCAGTACCGCACACAGCCAGACCACCCCTCCGCCCTCATCACGACCTCGGACCACTGCCAGCGTCCCCAGGACCACCGTGTGGCCCGTGCTGACGGTGCCCCCCACGGCACCCTCCCCTGCACCCAGCCTGGTGGCGTCCGCCTTTGGTGAATCTGGCAGCACTGATGGAAGCAGCGATGAGGAACTGAGCGGGGACCAGGAGGCCAGTGGGGGTGGCTCTGGGGGGCTCGAGCCCTTGGAGGGCAGCAGCGTGGCCACCCCTGGGCCACCTGTCGAGAGGGCTTCCTGCTACAACTCCGCGTTGGGCTGCTGCTCTGATGGGAAGACGCCCTCGCTGGACGCAGAGGGCTCCAACTGCCCCGCCACCAAGGTGTTCCAGGGCGTCCTGGAGCTGGAGGGCGTCGAGGGCCAGGAGCTGTTCTACACGCCCGAGATGGCTGACCCCAAGTCAGAACTGTTCGGGGAGACAGCCAGGAGCATTGAGAGCACCCTGGACGACCTCTTCCGGAATTCAGACGTCAAGAAGGATTTTCGGAGTGTCCGCTTGCGGGACCTGGGGCCCGGCAAATCCGTCCGCGCCATTGTGGATGTGCACTTTGACCCCACCACAGCCTTCAGGGCACCCGACGTGGCCCGGGCCCTGCTCCGGCAGATCCAGGTGTCCAGGCGCCGGTCCTTGGGGGTGAGGCGGCCGCTGCAGGAGCACGTGCGATTTATGGACTTTGACTGGTTTCCTGCGTTTATCACGGGGGCCACGTCAGGAGCCATTGCTGCGGGAGCCACGGCCAGAGCCACCACTGCATCGCGCCTGCCGTCCTCTGCTGTGACCCCTCGGGCCCCGCACCCCAGTCACACAAGCCAGCCCGTTGCCAAGACCACGGCAGCCCCCACCACACGTCGGCCCCCCACCACTGCCCCCAGCCGTGTGCCCGGACGTCGGCCCCCGGCCCCCCAGCAGCCTCCAAAGCCCTGTGACTCACAGCCCTGCTTCCACGGGGGGACCTGCCAGGACTGGGCATTGGGCGGGGGCTTCACCTGCAGCTGCCCGGCAGGCAGGGGAGGCGCCGTCTGTGAGAAGGTGCTTGGCGCCCCTGTGCCGGCCTTCGAGGGCCGCTCCTTCCTGGCCTTCCCCACTCTCCGCGCCTACCACACGCTGCGCCTGGCACTGGAATTCCGGGCGCTGGAGCCTCAGGGGCTGCTGCTGTACAATGGCAACGCCCGGGGCAAGGACTTCCTGGCATTGGCGCTGCTAGATGGCCGCGTGCAGCTCAGGTTTGACACAGGTTCGGGGCCGGCGGTGCTGACCAGTGCCGTGCCGGTAGAGCCGGGCCAGTGGCACCGCCTGGAGCTGTCCCGGCACTGGCGCCGGGGCACCCTCTCGGTGGATGGTGAGACCCCTGTTCTGGGCGAGAGTCCCAGTGGCACCGACGGCCTCAACCTGGACACAGACCTCTTTGTGGGCGGCGTACCCGAGGACCAGGCTGCCGTGGCGCTGGAGCGGACCTTCGTGGGCGCCGGCCTGAGGGGGTGCATCCGTTTGCTGGACGTCAACAACCAGCGCCTGGAGCTTGGCATTGGGCCGGGGGCTGCCACCCGAGGCTCTGGCGTGGGCGAGTGCGGGGACCACCCCTGCCTGCCCAACCCCTGCCATGGCGGGGCCCCATGCCAGAACCTGGAGGCTGGAAGGTTCCATTGCCAGTGCCCGCCCGGCCGCGTCGGACCAACCTGTGCCGATGAGAAGAGCCCCTGCCAGCCCAACCCCTGCCATGGGGCGGCGCCCTGCCGTGTGCTGCCCGAGGGTGGTGCTCAGTGCGAGTGCCCCCTGGGGCGTGAGGGCACCTTCTGCCAGACAGCCTCGGGGCAGGACGGCTCTGGGCCCTTCCTGGCTGACTTCAACGGCTTCTCCCACCTGGAGCTGAGAGGCCTGCACACCTTTGCACGGGACCTGGGGGAGAAGATGGCGCTGGAGGTCGTGTTCCTGGCACGAGGCCCCAGCGGCCTCCTGCTCTACAACGGGCAGAAGACGGACGGCAAGGGGGACTTCGTGTCGCTGGCACTGCGGGACCGCCGCCTGGAGTTCCGCTACGACCTGGGCAAGGGGGCAGCGGTCATCAGGAGCAGGGAGCCAGTCACCCTGGGAGCCTGGACCAGGGTCTCACTGGAGCGAAACGGCCGCAAGGGTGCCCTGCGTGTGGGCGACGGCCCCCGTGTGTTGGGGGAGTCCCCGAAATCCCGCAAGGTTCCGCACACCGTCCTCAACCTGAAGGAGCCGCTCTACGTAGGGGGCGCTCCCGACTTCAGCAAGCTGGCCCGTGCTGCTGCCGTGTCCTCTGGCTTCGACGGTGCCATCCAGCTGGTCTCCCTCGGAGGCCGCCAGCTGCTGACCCCGGAGCACGTGCTGCGGCAGGTGGACGTCACGTCCTTTGCAGGTCACCCCTGCACCCGGGCCTCAGGCCACCCCTGCCTCAATGGGGCCTCCTGCGTCCCGAGGGAGGCTGCCTATGTGTGCCTGTGTCCCGGGGGATTCTCAGGACCGCACTGCGAGAAGGGGCTGGTGGAGAAGTCAGCGGGGGACGTGGATACCTTGGCCTTTGACGGGCGGACCTTTGTCGAGTACCTCAACGCTGTGACCGAGAGCGAACTGGCCAATGAGATCCCCGTCCCCGAAACTCTGGATTCCGGGGCCCTTCACAGCGAGAAGGCACTGCAGAGCAACCACTTTGAACTGAGCCTGCGCACTGAGGCCACGCAGGGGCTGGTGCTCTGGAGTGGCAAGGCCACGGAGCGGGCAGACTATGTGGCACTGGCCATTGTGGACGGGCACCTGCAACTGAGCTACAACCTGGGCTCCCAGCCCGTGGTGCTGCGTTCCACCGTGCCCGTCAACACCAACCGCTGGTTGCGGGTCGTGGCACATAGGGAGCAGAGGGAAGGTTCCCTGCAGGTGGGCAATGAGGCCCCTGTGACCGGCTCCTCCCCGCTGGGCGCCACGCAGCTGGACACTGATGGAGCCCTGTGGCTTGGGGGCCTGCCGGAGCTGCCCGTGGGCCCAGCACTGCCCAAGGCCTACGGCACAGGCTTTGTGGGCTGCTTGCGGGACGTGGTGGTGGGCCGGCACCCGCTGCACCTGCTGGAGGACGCCGTCACCAAGCCAGAGCTGCGGCCCTGCCCCACCCCATGA MENEPDHENVEQSLCAKTSEEELNKSFNLEASLSKFSYIDMDKELEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEDESFILEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGKYQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTVVLLDSVEKLHVIDRQTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRKAIVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPVIVDYCLLLQRNVPGNAVRLRRRVRAQRGGAGPGVLRLQEEPVPQRGGACVWVGRLHLQQRMRAAAGAVQPAAPHPPAQPRAVRLAGPLLQRDLQLRQHLCALGRRADGLVPVPRDLPWRPRGDRLRQRRRRLPRRVPAPAPRLRPPGECLQEVRRPL*PLSGRPP*PEPQLPCEPAHAAP*DAPTARELPCPAGASVWGRRSHLRKRLCHGPIGGRPGSPPAESALRPVPGSRPVPGALPVQCRVPVPPWPSPLLLRPRHL*RGLQARVCPGRAHV*Q*LLAAAG*VPAAACHPQQAPGPV*PGPVPMPRGAVCIWGDVCCEERAGSV*MPAGVLEPLRSCVRQRRRHIRQRVRAGGHGLYPRAGDPGGAQRTL*PLRAVPLWSPVRGRDRALRVPL*MRGFGPARVWLRRAHVPQRVHAARARLHTPDQPARGLSWTL*DLWRCRVCFWGCVLRRAVCVSPV*APPARPRVWQRRCHLRQCLRATGSRLPPADTDRGGPGRAVRAGRVRFRRLWLWGGR*L*AGAVPAARWHLGRGLGGRAVCL*LQLPECPRQPGVRLRWGHLQHRV*AEEGQV*VTARALRSGPGSLPRPHLRPAAACGPLTLCPDALRLLPGQYHRSPGRGPGWLPQCLPVQPPWLLRRHL*PSHRPVLLPPRCGGPQV*PL*AWLLELSRHRHRWPEWLYTLQL*SPRRRAG*L*ADDGAVLV*ARGGWTQVWAVSRRPCPGPRGL*S*RFCACDLCGDAL*VRCAVRGGVWLSPLCLPDAHLSRGQRYQGLWVRWSHIRQRVSAEDHRLPPGPANLYPEPGPVPGGCCSQHSPDICLRDCDHPRAPPEPGTAGPPRRPPPGSQQYRTQPDHPSALITTSDHCQRPQDHRVARADGAPHGTLPCTQPGGVRLW*IWQH*WKQR*GTERGPGGQWGWLWGARALGGQQRGHPWATCREGFLLQLRVGLLL*WEDALAGRRGLQLPRHQGVPGRPGAGGRRGPGAVLHARDG*PQVRTVRGDSQEH*EHPGRPLPEFRRQEGFSECPLAGPGARQIRPRHCGCAL*PHHSLQGTRRGPGPAPADPGVQAPVLGGEAAAAGARAIYGL*LVSCVYHGGHVRSHCCGSHGQSHHCIAPAVLCCDPSGPAPQSHKPARCQDHGSPHHTSAPHHCPQPCARTSAPGPPAASKAL*LTALLPRGDLPGLGIGRGLHLQLPGRQGRRRL*EGAWRPCAGLRGPLLPGLPHSPRLPHAAPGTGIPGAGASGAAAVQWQRPGQGLPGIGAARWPRAAQV*HRFGAGGADQCRAGRAGPVAPPGAVPALAPGHPLGGW*DPCSGRESQWHRRPQPGHRPLCGRRTRGPGCRGAGADLRGRRPEGVHPFAGRQQPAPGAWHWAGGCHPRLWRGRVRGPPLPAQPLPWRGPMPEPGGWKVPLPVPARPRRTNLCR*EEPLPAQPLPWGGALPCAARGWCSVRVPPGA*GHLLPDSLGAGRLWALPG*LQRLLPPGAERPAHLCTGPGGEDGAGGRVPGTRPQRPPALQRAEDGRQGGLRVAGTAGPPPGVPLRPGQGGSGHQEQGASHPGSLDQGLTGAKRPQGCPACGRRPPCVGGVPEIPQGSAHRPQPEGAALRRGRSRLQQAGPCCCRVLWLRRCHPAGLPRRPPAADPGARAAAGGRHVLCRSPLHPGLRPPLPQWGLLRPEGGCLCVPVSRGILRTALREGAGGEVSGGRGYLGL*RADLCRVPQRCDRERTGQ*DPRPRNSGFRGPSQREGTAEQPL*TEPAH*GHAGAGALEWQGHGAGRLCGTGHCGRAPATELQPGLPARGAAFHRARQHQPLVAGRGT*GAEGRFPAGGQ*GPCDRLLPAGRHAAGH*WSPVAWGPAGAARGPSTAQGLRHRLCGLLAGRGGGPAPAAPAGGRRHQARAAALPHPM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31050 KCNQ3::PCAT1 ENSG00000184156.18::ENSG00000253438.5 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2421 TRUE 939 KCNQ3 ENSG00000184156.18 protein_coding - - chr8:132120861-132481095:- chr8:132184241:- chr8:133133108-133493342:- chr8:133196488:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:132180735,chr8:132180744 chr8:127335379,chr8:127335370 NA NA chr8:133192982,chr8:133192991 chr8:128347624,chr8:128347615 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:5.10Mb] 9 3 9 0.84 ONLY_REF_SPLICE YES_LDAS 0.1063 GT 1.8256 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31051 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1364 FALSE NA FALSE NA PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129569843:- chr3:129274057-129325519:- chr3:129288686:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129569173,chr3:129569180 chr3:129710362,chr3:129710366 NA NA chr3:129288016,chr3:129288023 chr3:129429205,chr3:129429209 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Sema|365-524|1.1e-17^PSI|549-601|1.3e-13^TIG_plexin|625-700|1.1e-09^PSI|711-749|2.5e-07^TIG_plexin|783-810|0.3^PSI|848-872|0.055^TIG|891-978|1.1e-14^TIG|981-1063|8.5e-15^TIG|1069-1143|1.6e-12^TIG|1209-1259|5.7e-05^Insulin_TMD|1271-1296|8.9e-05^Plexin_cytopl|1345-1888|2.9e-190^Plexin_RBD|1541-1652|2.7e-44 C2orf69|40-160|5e-05^DUF2207_C|43-115|0.11^Exonuc_VII_L|44-129|9.6e-05^Tmemb_cc2|48-455|1.1e-170^CYP38_PsbQ-like|50-139|1.9e-06^SYMPK_PTA1_N|57-127|0.5^CbiA|118-233|0.00029^CYP38_PsbQ-like|283-360|0.031^CbiA|284-310|0.42^Exonuc_VII_L|295-397|0.00035^DUF2207_C|323-450|0.00012^C2orf69|337-394|0.44^SYMPK_PTA1_N|354-442|1.4e-05^CYP38_PsbQ-like|362-377|0.7 ["ChimerKB","Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.04Mb];LOCAL_REARRANGEMENT:-:[40974] 9 5 9 4.54 ONLY_REF_SPLICE YES_LDAS 0.1462 GT 1.5656 AG 1.9086 ENST00000324093.9 1-3865 ENST00000698214.1 28-1413 chr3|-|[0]129569843-129569957[0]|[2]129570786-129570935[0]|[2]129571040-129571303[0]|[2]129571509-129571599[2]|[1]129571677-129571844[2]|[1]129572609-129572748[0]|[2]129572842-129572941[2]|[1]129573594-129573745[0]|[2]129574336-129574490[1]|[0]129575469-129575562[0]|[2]129575766-129575855[0]|[2]129578329-129578433[0]|[2]129583567-129583669[2]|[1]129584125-129584233[1]|[0]129584385-129584562[0]|[2]129585952-129586081[2]|[1]129586172-129586272[0]|[2]129586588-129586719[0]|[2]129589351-129589527[0]|[2]129605329-129606639[0]<==>chr3|-|[2]129651481-129651795[0]|[2]129654968-129655103[2]|[1]129670330-129671264[0] atggctcctcgcgccgcgggcggcgcaccccttagcgcccgggccgccgccgccagccccccgccgttccagacgccgccgcggtgcccggtgccgctgctgttgctgctgctcctgggggcggcgcgggccggcgccctggagatccagcgtcggttcccctcgcccacgcccaccaacaacttcgccctggacggcgcggcggggaccgtgtacctggcggccgtcaaccgcctctatcagctgtcgggcgccaacctgagcctggaggccgaggcggccgtgggcccggtgcccgacagcccgctgtgtcacgctccgcagctgccgcaggcctcgtgcgagcacccgcggcgcctcacggacaactacaacaagatcctgcagctggaccccggccagggcctggtagtcgtgtgcgggtccatctaccagggcttctgccagctgcggcgccggggcaacatctcggccgtggccgtgcgcttcccgcccgccgcgccgcccgccgagcccgtcacggtgttccccagcatgctgaacgtggcggccaaccacccgaacgcgtccaccgtggggctagttctgcctcccgccgcgggcgcggggggcagccgcctgctcgtgggcgccacgtacaccggttacggcagctccttcttcccgcgcaaccgcagcctggaggaccaccgcttcgagaacacgcccgagatcgccatccgctccctggacacgcgcggcgacctggccaagctcttcaccttcgacctcaacccctccgacgacaacatcctcaagatcaagcagggcgccaaggagcagcacaagctgggcttcgtgagcgccttcctgcacccgtccgacccgccgccgggtgcacagtcctacgcgtacctggcgctcaacagcgaggcgcgcgcgggcgacaaggagagccaggcgcggagcctgctggcgcgcatctgcctgccccacggcgccggcggcgacgccaagaagctcaccgagtcctacatccagttgggcttgcagtgcgcgggcggcgcgggccgcggcgacctctacagccgcctggtgtcggtcttcccagcccgggagcggctctttgctgtcttcgagcggccccaggggtcccccgcggcccgcgctgctccggccgcactctgcgccttccgcttcgccgacgtgcgagccgccatccgagctgcgcgcaccgcctgcttcgtggaaccggcgcccgacgtggtggcggtgctcgacagcgtggtgcagggcacgggaccggcctgtgagcgcaagctcaacatccagctccagccagagcagctggactgtggagctgctcacctgcagcacccgctgtccatcctgcagcccctgaaggccacgcccgtgttccgcgccccgggcctcacctccgtggccgtggccagcgtcaacaactacacagcggtcttcctgggcacggtcaacgggaggcttctcaagatcaacctgaacgagagcatgcaggtggtgagcaggcgggtggtgactgtggcctatggggagcccgtgcaccatgtcatgcagtttgacccagcagactccggttacctttacctgatgacgtcccaccagatggccagggtgaaggtcgccgcctgcaacgtgcactccacctgtggggactgcgtgggtgcggcggacgcctactgcggctggtgtgccctggagacgcggtgcaccttgcagcaggactgcaccaattccagccagcagcatttctggaccagtgccagcgagggccccagccgctgtcctgccatgaccgtcctgccttccgagatcgatgtgcgccaggagtacccaggcatgatcctgcagatctcgggcagcctgcccagcctcagtggcatggagatggcctgtgactatgggaacaacatccgcactgtggctcgggtcccaggccctgcctttggtcaccagattgcctactgcaacctcctgccgagggaccagtttccgcccttcccccccaaccaggaccacgtgactgttgagatgtctgtgagggtcaatgggcggaacatcgtcaaggccaatttcaccatctacgactgcagccgcactgcacaagtgtacccccacacagcctgtaccagctgcctgtcggcacagtggccctgtttctggtgcagccagcagcactcctgtgtttccaaccagtctcggtgcgaggcctcaccaaaccccacgagccctcaggactgcccccggaccctgctctcacccctggcacccgtgcctacgggtggctcccagaacatcctggtgcctctggccaacactgcctttttccagggtgcagccctggagtgtagttttgggctggaggagatcttcgaggctgtgtgggtgaatgagtctgttgtacgctgtgaccaggtggtgctgcacacgacccggaagagccaggtgttcccgctcagcctccaactaaaggggcggccagcccgattcctggacagccctgagcccatgacagtcatggtctataactgtgccatgggcagccccgactgttcccagtgcctgggccgcgaagacctgggtcacctgtgcatgtggagtgatggctgccgcctgcgggggcctctgcagcccatggctggcacctgccccgcccccgagatccacgcgattgagcccctgagtggcccgttggacggtgggaccctgctgaccatccgaggaaggaacctgggccggcggctcagtgacgtggcccacggcgtgtggattggtggtgtggcctgtgagccactgcctgacagatacacggtgtcggaggagatcgtgtgtgtcacagggccagccccaggaccactctcaggtgtggtgaccgtgaacgcctctaaggagggcaagtcccgggaccgcttctcctacgtgctgcccctggtccactccctggagcctaccatgggccccaaggccgggggcaccaggatcaccatccatgggaatgacctccatgtaggctccgagctccaggtcctggtgaacgacacagacccctgcacggagctgatgcgcacagataccagcatcgcctgcaccatgcctgagggggccctgccggctccggtgcctgtgtgtgtgcgcttcgagcgtcggggctgcgtgcacggcaacctcaccttctggtacatgcagaacccggtcatcacggccatcagtccccgccgcagccctgtcagtggcggcaggaccatcacagtggctggtgagcgtttccacatggtgcagaatgtgtccatggccgtccaccacattggccgggagcccacgctctgcaaggttctcaactccaccctcatcacctgcccgtcccccggggccctgagcaacgcatcagcgccagtggacttcttcatcaatgggcgggcctacgcagacgaggtggctgtggctgaggagctactggaccccgaggaggcacagcggggcagcaggttccgcctggactacctccccaacccacagttctctacggccaagagggagaagtggatcaagcaccaccccggggagcctctcaccctcgttatccacaaggagcaggacagcctggggctccagagtcacgagtaccgggtcaagataggccaagtaagctgcgacatccagattgtctctgacagaatcatccactgctcggtcaacgagtccctgggcgcggccgtggggcagctgcccatcacaatccaggtagggaacttcaaccagaccatcgccacactgcagctggggggcagcgagacggccatcatcgtgtccatcgtcatctgcagcgtcctgctgctgctctccgtggtggATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGGTTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCTCACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCAAGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAAGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAGCATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCAGGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGACTATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATGACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAATCGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCCAAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGTAGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTTATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGATGA MAPRAAGGAPLSARAAAASPPPFQTPPRCPVPLLLLLLLGAARAGALEIQRRFPSPTPTNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVVVCGSIYQGFCQLRRRGNISAVAVRFPPAAPPAEPVTVFPSMLNVAANHPNASTVGLVLPPAAGAGGSRLLVGATYTGYGSSFFPRNRSLEDHRFENTPEIAIRSLDTRGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDKESQARSLLARICLPHGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPARERLFAVFERPQGSPAARAAPAALCAFRFADVRAAIRAARTACFVEPAPDVVAVLDSVVQGTGPACERKLNIQLQPEQLDCGAAHLQHPLSILQPLKATPVFRAPGLTSVAVASVNNYTAVFLGTVNGRLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQMARVKVAACNVHSTCGDCVGAADAYCGWCALETRCTLQQDCTNSSQQHFWTSASEGPSRCPAMTVLPSEIDVRQEYPGMILQISGSLPSLSGMEMACDYGNNIRTVARVPGPAFGHQIAYCNLLPRDQFPPFPPNQDHVTVEMSVRVNGRNIVKANFTIYDCSRTAQVYPHTACTSCLSAQWPCFWCSQQHSCVSNQSRCEASPNPTSPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQGAALECSFGLEEIFEAVWVNESVVRCDQVVLHTTRKSQVFPLSLQLKGRPARFLDSPEPMTVMVYNCAMGSPDCSQCLGREDLGHLCMWSDGCRLRGPLQPMAGTCPAPEIHAIEPLSGPLDGGTLLTIRGRNLGRRLSDVAHGVWIGGVACEPLPDRYTVSEEIVCVTGPAPGPLSGVVTVNASKEGKSRDRFSYVLPLVHSLEPTMGPKAGGTRITIHGNDLHVGSELQVLVNDTDPCTELMRTDTSIACTMPEGALPAPVPVCVRFERRGCVHGNLTFWYMQNPVITAISPRRSPVSGGRTITVAGERFHMVQNVSMAVHHIGREPTLCKVLNSTLITCPSPGALSNASAPVDFFINGRAYADEVAVAEELLDPEEAQRGSRFRLDYLPNPQFSTAKREKWIKHHPGEPLTLVIHKEQDSLGLQSHEYRVKIGQVSCDIQIVSDRIIHCSVNESLGAAVGQLPITIQVGNFNQTIATLQLGGSETAIIVSIVICSVLLLLSVVDRTVGSKQPCPNIQCSGLQYRWQHPHRLCGWNTRPSAHKGCHCSPAAEDPEAHRTNQDCTNSPGRQRC*ILEACQQCRQTAGCPHQASL*EEEPEICPNYPPAAKET*ALPQEAQRGRAEWDPPAAKGCLQGHAPGSEGCRSKGDWLQ*RCGG*CQRWVFQLLPGHPFSSRRCSLKAQRDCLTHSEQIWQCRQHPQPEGLFRGRASG*CGEGFGSDFKLSV*PKIW**RRLF*CHFRLSGSQQHHRGHRCRSIQLQNKHPGHAELRI*CTTT*DPGDPGNPGQTRGIL*DSQGTLSEGLFLNNADLTGGAI*M*TIGRTAK*PNRAPPE*NLELEAGTGKHGRKNRVSVL*TGPGHPGGPGGMPDAHLQDGAAAAAAAGGAARRAGECHCPEPSGQTHQHPPGCHGSPFGLCLHCSQLCGPPHEDSQQDVQHFIPCGFYCLSLEALGRPLQLCGTVLFIP*M FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31052 ELOVL6::ENPEP ENSG00000170522.10::ENSG00000138792.10 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1353 TRUE 2414 TRUE 935 ELOVL6 ENSG00000170522.10 protein_coding - - chr4:110045846-110199199:- chr4:110198247:- chr4:110967002-111120355:- chr4:111119403:- ENPEP ENSG00000138792.10 protein_coding + + chr4:110365733-110565285:+ chr4:110488541:+ chr4:111286889-111486441:+ chr4:111409697:+ chr4:110150649 chr4:110442756 NA NA chr4:111071805 chr4:111363912 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ELO-PARTIAL|25-89~|4.3e-76 ERAP1_C-PARTIAL|~645-933|1.5e-90^DUF1570|660-687|0.92 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.17Mb] 9 15 9 5 ONLY_REF_SPLICE YES_LDAS 0.1512 GT 1.8323 AG 1.9329 ENST00000394607.7 1-89 ENST00000265162.10 645-2874 chr4|-|[1]110198247-110198335[0]<==>chr4|+|[2]110488541-110488682[2]|[0]110491033-110491164[2]|[0]110506637-110506757[0]|[1]110509653-110509807[2]|[0]110510245-110510358[2]|[0]110513415-110513549[2]|[0]110515377-110515442[2]|[0]110520008-110520073[2]|[0]110520215-110520366[1]|[2]110531198-110531277[0]|[1]110542751-110542887[2]|[0]110543015-110543070[1]|[2]110548176-110548326[2]|[0]110549346-110549419[1]|[2]110549528-110549632[1]|[2]110549716-110549886[1]|[2]110553315-110553455[1]|[2]110559647-110559725[2]|[0]110561406-110561558[2] atgaacatgtcagtgttgactttacaagaatatgaattcgaaaagcagttcaacgagaatgaagccatccaatggatgcaggaaaactgGAGCATAGTGGCCACCGATCATGAACCAACAGATGCCAGGAAATCTTTTCCTTGTTTTGATGAGCCCAACAAAAAGGCAACTTATACAATATCTATCACCCATCCCAAAGAATACGGAGCACTTTCAAATATGCCAGTGGCGAAAGAAGAGTCAGTGGATGATAAATGGACTCGAACAACTTTTGAGAAGTCTGTCCCCATGAGCACGTACCTGGTGTGCTTTGCTGTACATCAATTTGACTCTGTAAAGAGAATATCAAATAGTGGAAAACCTCTTACAATTTATGTCCAGCCAGAGCAAAAGCACACAGCCGAATATGCTGCAAACATAACTAAAAGTGTGTTTGATTATTTTGAAGAATACTTTGCTATGAATTATTCTCTTCCTAAATTAGATAAAATCGCTATTCCAGATTTTGGCACTGGTGCCATGGAGAACTGGGGACTCATCACGTACAGAGAAACGAACCTGCTTTATGACCCTAAGGAATCAGCCTCATCAAACCAACAGAGGGTGGCCACTGTGGTTGCCCATGAACTTGTGCATCAGTGGTTTGGAAATATTGTGACCATGGACTGGTGGGAAGACTTGTGGCTAAATGAAGGATTTGCTTCTTTCTTTGAGTTTCTGGGAGTAAACCATGCAGAAACAGACTGGCAAATGCGTGACCAAATGTTACTTGAAGATGTATTACCTGTTCAAGAGGATGATTCTTTGATGTCTTCGCATCCAATTATTGTGACTGTGACAACCCCTGATGAAATAACATCTGTTTTTGATGGAATATCCTATAGCAAGGGATCTTCTATTTTGAGAATGCTTGAAGACTGGATAAAACCAGAGAATTTTCAAAAAGGATGTCAGATGTACTTGGAAAAATACCAATTCAAGAATGCAAAAACTTCTGATTTTTGGGCAGCACTGGAAGAGGCAAGTAGGCTACCAGTGAAAGAAGTAATGGACACCTGGACCAGACAGATGGGTTATCCTGTGCTTAACGTGAACGGTGTCAAGAACATCACACAGAAACGCTTTTTGTTGGACCCAAGAGCTAACCCTTCTCAGCCCCCTTCAGATCTTGGTTATACATGGAATATCCCAGTTAAATGGACTGAAGATAATATAACAAGCAGTGTGTTATTTAATAGGTCAGAAAAAGAAGGAATCACTTTGAACTCCTCTAATCCTAGTGGAAATGCTTTTCTCAAAATAAACCCAGATCATATTGGGTTTTATCGTGTAAATTATGAAGTAGCAACTTGGGACTCGATAGCTACAGCGCTCTCCTTGAACCACAAGACATTTTCTTCAGCAGATCGTGCAAGTCTTATTGATGATGCTTTTGCCTTGGCAAGAGCTCAACTTCTAGATTATAAGGTGGCTTTGAACTTGACCAAGTATCTCAAAAGGGAAGAGAATTTTTTACCATGGCAGAGAGTAATTTCAGCTGTAACCTACATCATTAGCATGTTTGAAGATGATAAAGAGCTATATCCTATGATTGAGGAATACTTCCAAGGTCAAGTGAAGCCTATTGCAGATTCTCTGGGATGGAATGATGCTGGAGACCATGTCACAAAGTTACTCCGTTCCTCCGTGTTAGGGTTTGCGTGCAAGATGGGAGACAGAGAAGCCTTGAACAATGCTTCCTCGTTATTTGAGCAGTGGCTAAATGGGACTGTAAGCCTTCCCGTAAATCTCAGGCTTCTGGTGTATCGGTATGGGATGCAGAACTCTGGCAATGAGATTTCATGGAACTACACTCTTGAGCAATACCAGAAAACTTCATTAGCTCAAGAAAAAGAAAAACTGCTGTATGGATTAGCATCAGTGAAGAACGTTACTCTTTTGTCAAGGTATTTGGATTTGCTCAAGGACACGAACCTTATTAAAACTCAGGATGTGTTTACAGTCATTCGATATATCTCATATAACAGCTATGGGAAGAACATGGCCTGGAATTGGATACAACTCAACTGGGACTATCTAGTCAACAGATATACACTCAATAACAGAAACCTTGGCCGAATTGTCACAATAGCAGAGCCATTCAACACTGAACTGCAACTGTGGCAGATGGAGAGCTTTTTTGCAAAATATCCACAAGCTGGAGCAGGAGAAAAACCTAGGGAACAAGTGCTGGAAACAGTGAAAAACAATATAGAGTGGCTAAAACAACATAGAAACACCATCAGAGAATGGTTTTTTAATTTACTTGAGAGTGGTTAA MNMSVLTLQEYEFEKQFNENEAIQWMQENWSIVATDHEPTDARKSFPCFDEPNKKATYTISITHPKEYGALSNMPVAKEESVDDKWTRTTFEKSVPMSTYLVCFAVHQFDSVKRISNSGKPLTIYVQPEQKHTAEYAANITKSVFDYFEEYFAMNYSLPKLDKIAIPDFGTGAMENWGLITYRETNLLYDPKESASSNQQRVATVVAHELVHQWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEEASRLPVKEVMDTWTRQMGYPVLNVNGVKNITQKRFLLDPRANPSQPPSDLGYTWNIPVKWTEDNITSSVLFNRSEKEGITLNSSNPSGNAFLKINPDHIGFYRVNYEVATWDSIATALSLNHKTFSSADRASLIDDAFALARAQLLDYKVALNLTKYLKREENFLPWQRVISAVTYIISMFEDDKELYPMIEEYFQGQVKPIADSLGWNDAGDHVTKLLRSSVLGFACKMGDREALNNASSLFEQWLNGTVSLPVNLRLLVYRYGMQNSGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDTNLIKTQDVFTVIRYISYNSYGKNMAWNWIQLNWDYLVNRYTLNNRNLGRIVTIAEPFNTELQLWQMESFFAKYPQAGAGEKPREQVLETVKNNIEWLKQHRNTIREWFFNLLESG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31055 CYLD::KLF3 ENSG00000083799.18::ENSG00000109787.13 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1365 FALSE NA FALSE NA CYLD ENSG00000083799.18 protein_coding + + chr16:50742050-50801935:+ chr16:50754424:+ chr16:50775961-50835846:+ chr16:50788335:+ KLF3 ENSG00000109787.13 protein_coding + + chr4:38664197-38701517:+ chr4:38697082:+ chr4:38665818-38703138:+ chr4:38698703:+ chr16:50766918,chr16:50766918 chr4:38695473,chr4:38695470 NA NA chr16:50800829,chr16:50800829 chr4:38697094,chr4:38697091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CAP_GLY|138-201|1.6e-15^CAP_GLY|233-287|6.8e-09^CYLD_phos_site|308-471|3.1e-95^CAP_GLY|478-538|2.2e-17^UCH|593-889|2.4e-13^COX_ARM|621-646|2.6e-05 none ["CYLD:Oncogene","CYLD:FoundationOne_panel","CYLD:ArcherDX_panel"];["KLF3:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr4] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1404 GT 1.9329 AG 1.6402 ENST00000427738.8 1-913 ENST00000261438.10 857-1038 chr16|+|[0]50749699-50750202[2]|[0]50751604-50751906[2]|[0]50754319-50754424[0]<==>chr4|+|[1]38697082-38697263[2] atgagttcaggcttatggagccaagaaaaagtcacttcaccctactgggaagagcggattttttacttgcttcttcaagaatgcagcgttacagacaaacaaacacaaaagctccttaaagtaccgaagggaagtataggacagtatattcaagatcgttctgtggggcattcaaggattccttctgcaaaaggcaagaaaaatcagattggattaaaaattctagagcaacctcatgcagttctctttgttgatgaaaaggatgttgtagagataaatgaaaagttcacagagttacttttggcaattaccaattgtgaggagaggttcagcctgtttaaaaacagaaacagactaagtaaaggcctccaaatagacgtgggctgtcctgtgaaagtacagctgagatctggggaagaaaaatttcctggagttgtacgcttcagaggacccctgttagcagagaggacagtctccggaatattctttggagttgaattgctggaagaaggtcgtggtcaaggtttcactgacggggtgtaccaagggaaacagctttttcagtgtgatgaagattgtggcgtgtttgttgcattggacaagctagaactcatagaagatgatgacactgcattggaaagtgattacgcaggtcctggggacacaatgcaggtcgaacttcctcctttggaaataaactccagagtttctttgaaggttggagaaacaatagaatctggaacagttatattctgtgatgttttgccaggaaaagaaagcttaggatattttgttggtgtggacatggataaccctattggcaactgggatggaagatttgatggagtgcagctttgtagttttgcgtgtgttgaaagtacaattctattgcacatcaatgatatcatcccagGAGAAAAACCCTACAAATGTACATGGGAAGGGTGCACATGGAAGTTTGCTCGGTCTGATGAACTAACAAGACATTTCCGAAAACATACTGGAATCAAACCTTTCCAGTGCCCGGACTGTGACCGCAGCTTCTCCCGTTCTGACCATCTTGCCCTCCATAGGAAACGCCACATGCTAGTCTGA MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRIPSAKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLSKGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDKLELIEDDDTALESDYAGPGDTMQVELPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV* FALSE TRUE hsa-mir-3181 chr16:50742305-50742377:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE familial cylindromatosis gene 1 Yes cylindroma cylindroma familial cylindromatosis, familial trichoepithelioma, Brooke-Spiegler syndrome epithelial TSG missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 31057 UNC45A::DYRK1A ENSG00000140553.18::ENSG00000157540.22 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1363 FALSE NA FALSE NA UNC45A ENSG00000140553.18 protein_coding + + chr15:90930180-90954093:+ chr15:90945063:+ chr15:91473410-91497323:+ chr15:91488293:+ DYRK1A ENSG00000157540.22 protein_coding + + chr21:37365573-37526358:+ chr21:37496118:+ chr21:38737875-38898660:+ chr21:38868420:+ chr15:90945851,chr15:90945848 chr21:37493676,chr21:37493670 NA NA chr15:91489081,chr15:91489078 chr21:38865978,chr21:38865972 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Shisa|36-79|4.5e-06^TPR_9|157-198|0.11^TPR_2|164-191|5.4e-05^TPR_16|166-230|2e-09^TPR_1|168-191|2.6e-05^TPR_8|168-192|0.0041^TPR_14|168-200|0.05^TPR_11|168-192|2.9e-06^TPR_12|171-226|5.4e-05^TPR_7|173-197|0.001^TPR_19|175-235|4.8e-07^ANAPC3|175-253|3e-05^TPR_17|194-218|0.038^TPR_9|196-218|0.63^TPR_12|197-259|6.8e-05^Coatomer_E|198-245|7.9e-05^TPR_1|199-228|7.6e-06^TPR_2|200-229|3e-06^TPR_14|201-240|0.00013^TPR_8|204-226|0.038^TPR_6|204-227|0.58^TPR_7|206-220|1.3^TPR_16|208-255|2.1e-07^TPR_9|208-265|0.00019^TPR_19|209-252|4.6e-06^TPR_11|211-246|0.23^TPR_17|223-252|4.5e-06^TPR_2|233-265|1.2e-07^TPR_1|233-265|2.3e-06^TPR_8|233-265|1.2e-07^TPR_14|234-270|6.4e-05^TPR_6|234-264|5.2e-05^TPR_7|241-257|1.2^TPR_11|244-265|0.04^UNC45-central|298-355|0.3^Arm|330-363|0.29^TPR_16|338-370|3.9^TPR_14|338-360|1.2^HEAT_2|339-364|2.5^TPR_8|344-364|10^TPR_6|345-360|7.6^RIX1|352-406|0.58^UNC45-central|502-645|1.4e-32^HEAT_2|595-647|1.6^Arm|616-643|8.3^HEAT_2|682-736|0.003^Arm|724-736|5.4^Arm|779-797|6.6^UNC45-central|782-808|9.8^TPR_9|803-827|5.3^HEAT_2|843-856|7.3^Arm|873-885|0.4^UNC45-central|891-940|1.3^Arm|906-943|0.0022^HEAT_2|911-957|0.0093^HEAT|917-943|0.0047^HEAT_2|969-1065|0.17^Arm|969-983|1.3^RIX1|993-1069|0.00076^UNC45-central|1006-1068|0.32^Arm|1038-1068|0.53^HEAT|1048-1066|1.9 none ["DYRK1A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr21] 7 13 7 12.83 ONLY_REF_SPLICE YES_LDAS 0.2141 GT 1.6729 AG 1.8062 ENST00000639885.1 1-1619 ENST00000647188.2 1072-2265 chr15|+|[0]90934041-90934143[0]|[1]90934339-90934549[1]|[2]90934944-90935100[2]|[0]90935544-90935705[2]|[0]90935946-90935982[0]|[1]90936285-90936460[2]|[0]90939731-90939823[2]|[0]90940306-90940473[2]|[0]90942437-90942605[0]|[1]90942912-90943082[0]|[1]90944892-90945063[1]<==>chr21|+|[0]37496118-37496258[2]|[0]37505283-37505589[0]|[1]37506099-37506223[2]|[0]37511911-37512531[2] atgggcatccagagaaggtcaggccccttgctgacaggcctatctgtggggctactgctgctcttcagctgggtgacccttgtccagccaacctctctctcagctctggtccaccaccctcacttgtgccagaccacccgggatgtccatggccgtcactaccctggtttcttttgccctcgtctgtctgattctccagaggaagcctactgctgccacctgcaggctgcagggggctcctgctgcacccgggctgaatttgaggccctgtaccaagtcaatctgtccgctcttccgcccccgcccatcctcaggggcccaggcccgctcctagtgctgggcctctacaacctactggttgtgaccctgatgaccgtagacctcgtgcacttctgctgcggtcggggccggagtctgggctggagccaccgcaggcctccctctgggtcctccgccgcgagctccctgcaggccagctcagtggagcagctgcggaaggagggcaatgagctgttcaaatgtggagactacgggggcgccctggcggcctacactcaggccctgggtctggacgcgacgccccaggaccaggccgttctgcaccggaaccgggccgcctgccacctcaagctggaagattacgacaaagcagaaacagaggcatccaaagccattgaaaaggatggtggggatgtcaaagcactctaccggcggagccaagccctagagaagctgggccgcctggaccaggctgtccttgacctgcagagatgtgtgagcttggagcccaagaacaaagttttccaggaggccttgcggaacatcgggggccagattcaggagaaggtgcgatacatgtcctcgacggatgccaaagtggaacagatgtttcagatactgttggacccagaagagaagggcactgagaaaaagcaaaaggcttctcagaacctggtggtgctggccagggaggatgctggagcggagaagatcttccggagtaatggggttcagctcttgcaacgtttactggacatgggagagactgacctcatgctggcggctctgcgtacgctggttggcatttgctctgagcatcagtcacggacagtggcaaccctgagcatactgggaactcggcgagtagtctccatcctgggcgtggaaagccaggctgtgtccctggctgcctgccacctgctgcaggttatgtttgatgccctcaaggaaggtgtcaaaaaaggcttccgaggcaaagaaggtgccatcattgtggatcctgcccgggagctgaaggtcctcatcagtaacctcttagatctgctgacagaggtgggggtctctggccaaggccgagacaatgccctgaccctcctgattaaagcggtgccccggaagtctctcaaggaccccaacaacagcctcaccctctgggtcatcgaccaaggtctgaaaaagattttggaagtggggggctctctacaggaccctcctggggagctcgcagtgaccgcaaacagccgcatgagcgcctctattctcctcagcaagctctttgatgacctcaagtgtgatgcggagagggagaatttccacagactttgtgaaaactacatcaaGTAGATCAGATGAATAAAATAGTGGAAGTTCTGGGTATTCCACCTGCTCATATTCTTGACCAAGCACCAAAAGCAAGAAAGTTCTTTGAGAAGTTGCCAGATGGCACTTGGAACTTAAAGAAGACCAAAGATGGAAAACGGGAGTACAAACCACCAGGAACCCGTAAACTTCATAACATTCTTGGAGTGGAAACAGGAGGACCTGGTGGGCGACGTGCTGGGGAGTCAGGTCATACGGTCGCTGACTACTTGAAGTTCAAAGACCTCATTTTAAGGATGCTTGATTATGACCCCAAAACTCGAATTCAACCTTATTATGCTCTGCAGCACAGTTTCTTCAAGAAAACAGCTGATGAAGGTACAAATACAAGTAATAGTGTATCTACAAGCCCCGCCATGGAGCAGTCTCAGTCTTCGGGCACCACCTCCAGTACATCGTCAAGCTCAGGTGGCTCATCGGGGACAAGCAACAGTGGGAGAGCCCGGTCGGATCCGACGCACCAGCATCGGCACAGTGGTGGGCACTTCACAGCTGCCGTGCAGGCCATGGACTGCGAGACACACAGTCCCCAGGTGCGTCAGCAATTTCCTGCTCCTCTTGGTTGGTCAGGCACTGAAGCTCCTACACAGGTCACTGTTGAAACTCATCCTGTTCAAGAAACAACCTTTCATGTAGCCCCTCAACAGAATGCATTGCATCATCACCATGGTAACAGTTCCCATCACCATCACCACCACCACCACCATCACCACCACCATGGACAACAAGCCTTGGGTAACCGGACCAGGCCAAGGGTCTACAATTCTCCAACGAATAGCTCCTCTACCCAAGATTCTATGGAGGTTGGCCACAGTCACCACTCCATGACATCCCTGTCTTCCTCAACGACTTCTTCCTCGACATCTTCCTCCTCTACTGGTAACCAAGGCAATCAGGCCTACCAGAATCGCCCAGTGGCTGCTAATACCTTGGACTTTGGACAGAATGGAGCTATGGACGTTAATTTGACCGTCTACTCCAATCCCCGCCAAGAGACTGGCATAGCTGGACATCCAACATACCAATTTTCTGCTAATACAGGTCCTGCACATTACATGACTGAAGGACATCTGACAATGAGGCAAGGGGCTGATAGAGAAGAGTCCCCCATGACAGGAGTTTGTGTGCAACAGAGTCCTGTAGCTAGCTCGTGA MGIQRRSGPLLTGLSVGLLLLFSWVTLVQPTSLSALVHHPHLCQTTRDVHGRHYPGFFCPRLSDSPEEAYCCHLQAAGGSCCTRAEFEALYQVNLSALPPPPILRGPGPLLVLGLYNLLVVTLMTVDLVHFCCGRGRSLGWSHRRPPSGSSAASSLQASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEKVRYMSSTDAKVEQMFQILLDPEEKGTEKKQKASQNLVVLAREDAGAEKIFRSNGVQLLQRLLDMGETDLMLAALRTLVGICSEHQSRTVATLSILGTRRVVSILGVESQAVSLAACHLLQVMFDALKEGVKKGFRGKEGAIIVDPARELKVLISNLLDLLTEVGVSGQGRDNALTLLIKAVPRKSLKDPNNSLTLWVIDQGLKKILEVGGSLQDPPGELAVTANSRMSASILLSKLFDDLKCDAERENFHRLCENYIK*IR*IK*WKFWVFHLLIFLTKHQKQESSLRSCQMALGT*RRPKMENGSTNHQEPVNFITFLEWKQEDLVGDVLGSQVIRSLTT*SSKTSF*GCLIMTPKLEFNLIMLCSTVSSRKQLMKVQIQVIVYLQAPPWSSLSLRAPPPVHRQAQVAHRGQATVGEPGRIRRTSIGTVVGTSQLPCRPWTARHTVPRCVSNFLLLLVGQALKLLHRSLLKLILFKKQPFM*PLNRMHCIITMVTVPITITTTTTITTTMDNKPWVTGPGQGSTILQRIAPLPKILWRLATVTTP*HPCLPQRLLPRHLPPLLVTKAIRPTRIAQWLLIPWTLDRMELWTLI*PSTPIPAKRLA*LDIQHTNFLLIQVLHIT*LKDI*Q*GKGLIEKSPP*QEFVCNRVL*LAR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Dual specificity tyrosine-phosphorylation-regulated kinase 1A CMGC DYRK DYRK1 Q13627 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31060 PDS5B::ENSG00000288015 ENSG00000083642.19::ENSG00000288015.1 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2420 TRUE 938 PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32648880:+ chr13:33160589-33352157:+ chr13:33223017:+ ENSG00000288015 ENSG00000288015.1 lncRNA - - chr13:59121879-59230636:- chr13:59174000:- chr13:59696013-59804770:- chr13:59748134:- chr13:32650766,chr13:32650759 chr13:59212072,chr13:59212071 NA NA chr13:33224903,chr13:33224896 chr13:59786206,chr13:59786205 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDS5B:Oncogene"] 5 15 5 7.02 INCL_NON_REF_SPLICE YES_LDAS 0.1298 GT 1.7819 AG 1.231 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31062 MACF1::NT5C1A ENSG00000127603.32::ENSG00000116981.4 NCIH510 SRR8615808 SRR8670689 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39159020:+ chr1:39546988-39952849:+ chr1:39624692:+ NT5C1A ENSG00000116981.4 protein_coding - - chr1:39651229-39672107:- chr1:39659486:- chr1:40116901-40137779:- chr1:40125158:- chr1:39210072,chr1:39210072,chr1:39210072,chr1:39210072,chr1:39210072,chr1:39210072,chr1:39210073 chr1:39660089,chr1:39660090,chr1:39660091,chr1:39660094,chr1:39660098,chr1:39660077,chr1:39660076 NA NA chr1:39675744,chr1:39675744,chr1:39675744,chr1:39675744,chr1:39675744,chr1:39675744,chr1:39675745 chr1:40125761,chr1:40125762,chr1:40125763,chr1:40125766,chr1:40125770,chr1:40125749,chr1:40125748 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SPOUT_MTase_2-PARTIAL|1-52~|0.00034^Spectrin_3|7-28|0.78^CH-PARTIAL|23-52~|1.2e-23^CH_2-PARTIAL|29-52~|0.55^CAMSAP_CH-PARTIAL|40-52~|0.0076 none ["MACF1:Oncogene"];INTRACHROMOSOMAL[chr1:0.17Mb] 4 7 4 6.5 ONLY_REF_SPLICE YES_LDAS 0.1134 GT 1.8892 AG 1.9086 ENST00000672812.1 1-52 ENST00000235628.2 742-1107 chr1|+|[0]39158969-39159020[0]<==>chr1|-|[2]39659121-39659486[0] atgaacgcttacaagtatcagaagttcctggagggactcaacaaccttagagGGCCCCTTAAAGGGCTTTCTGGAGGCACTGGGTAGGTTGCAGAAGAAGTTCTACTCCAAAGGCCTGCGGCTGGAGTGCCCAATTCGTACCTACTTGGTGACAGCACGCAGTGCAGCCAGTTCCGGGGCCCGGGCTCTCAAGACCCTGCGCAGCTGGGGCCTGGAGACAGATGAAGCCTTGTTCCTTGCTGGAGCGCCCAAGGGCCCTCTCCTTGAGAAGATCCGCCCACACATCTTCTTTGATGACCAGATGTTCCATGTGGCTGGGGCTCAGGAGATGGGCACTGTGGCCGCCCATGTGCCTTATGGTGTGGCACAGACACCCCGGCGGACTGCACCTGCAAAGCAGGCCCCATCTGCACAGTAG MNAYKYQKFLEGLNNLRGPLKGLSGGTG*VAEEVLLQRPAAGVPNSYLLGDSTQCSQFRGPGSQDPAQLGPGDR*SLVPCWSAQGPSP*EDPPTHLL**PDVPCGWGSGDGHCGRPCALWCGTDTPADCTCKAGPICTV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31064 VTI1A::TCF7L2 ENSG00000151532.15::ENSG00000148737.18 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1366 FALSE NA FALSE NA VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112460582:+ chr10:114206756-114578503:+ chr10:114220341:+ TCF7L2 ENSG00000148737.18 protein_coding + + chr10:112950247-113167678:+ chr10:113141184:+ chr10:114710006-114927437:+ chr10:114900943:+ chr10:112462158,chr10:112462157,chr10:112462132 chr10:113091499,chr10:113091495,chr10:113091182 NA NA chr10:114221917,chr10:114221916,chr10:114221891 chr10:114851258,chr10:114851254,chr10:114850941 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame V-SNARE|12-90|7.9e-29^Mer2|12-62|0.00043^DUF6730|15-55|0.31^MetOD2|20-58|0.0022^FapA|30-89|0.00031^Sec20|34-54|0.83^DUF745|34-57|0.0017^Exonuc_VII_L-PARTIAL|34-153~|0.00078^DUF1664|35-86|0.00036^V-SNARE_C|36-56|1^Laminin_II|36-84|0.032^Sec8_N|36-61|0.055^PCRF|36-89|0.007^Spc7|37-81|0.0071^DUF5344|39-89|0.00041^DegQ|42-61|0.00071^Mer2-PARTIAL|73-153~|0.02^DegQ|77-89|3.5^DUF6730|77-123|0.57^V-SNARE|96-124|3.6^PCRF-PARTIAL|107-153~|0.0092^FapA-PARTIAL|110-153~|0.01^DUF1664-PARTIAL|114-153~|0.075^MetOD2-PARTIAL|116-153~|0.0059^DUF745-PARTIAL|116-153~|0.017^Spc7-PARTIAL|122-153~|0.0083^V-SNARE_C-PARTIAL|123-153~|8.2e-24^DUF6730-PARTIAL|123-153~|0.0014^Adhesin_P1_C-PARTIAL|128-153~|6.2e-05^Sec20-PARTIAL|131-153~|7e-05^Laminin_II-PARTIAL|136-153~|3.8e-05^DUF5344-PARTIAL|142-153~|0.2^Sec8_N-PARTIAL|148-153~|0.0029 none ["VTI1A:Oncogene"];["TCF7L2:Oncogene"];["ChimerKB","GUO2018CR_TCGA","ChimerPub","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.13Mb] 45 15 45 15 ONLY_REF_SPLICE YES_LDAS 0.6463 GT 1.6895 AG 1.8892 ENST00000432306.5 1-153 ENST00000369397.8 484-1791 chr10|+|[0]112447374-112447467[0]|[1]112460524-112460582[2]<==>chr10|+|[0]113141184-113141316[0]|[1]113143923-113144025[1]|[2]113146011-113146097[1]|[2]113150998-113151123[1]|[2]113151725-113151884[2]|[0]113152333-113152440[2]|[0]113158021-113158069[0]|[1]113158667-113158717[0]|[1]113159920-113159992[1]|[2]113165555-113165972[2] atgtcgtccgacttcgaaggttacgagcaggacttcgcggtgctcactgcagagatcaccagcaagattgcgagggtcccacgactcccgcctgatgaaaagaaacagatggttgcaaatgtggagaaacagcttgaagaagcgaaagaactgTCTAACAAAGTGCCAGTGGTGCAGCACCCTCACCATGTCCACCCCCTCACGCCTCTTATCACGTACAGCAATGAACACTTCACGCCGGGAAACCCACCTCCACACTTACCAGCCGACGTAGACCCCAAAACAGGAATCCCACGGCCTCCGCACCCTCCAGATATATCCCCGTATTACCCACTATCGCCTGGCACCGTAGGACAAATCCCCCATCCGCTAGGATGGTTAGTACCACAGCAAGGTCAACCAGTGTACCCAATCACGACAGGAGGATTCAGACACCCCTACCCCACAGCTCTGACCGTCAATGCTTCCATGTCCAGGTTCCCTCCCCATATGGTCCCACCACATCATACGCTACACACGACGGGCATTCCGCATCCGGCCATAGTCACACCAACAGTCAAACAGGAATCGTCCCAGAGTGATGTCGGCTCACTCCATAGTTCAAAGCATCAGGACTCCAAAAAGGAAGAAGAAAAGAAGAAGCCCCACATAAAGAAACCTCTTAATGCATTCATGTTGTATATGAAGGAAATGAGAGCAAAGGTCGTAGCTGAGTGCACGTTGAAAGAAAGCGCGGCCATCAACCAGATCCTTGGGCGGAGGTGGCATGCACTGTCCAGAGAAGAGCAAGCGAAATACTACGAGCTGGCCCGGAAGGAGCGACAGCTTCATATGCAACTGTACCCCGGCTGGTCCGCGCGGGATAACTATGGAAAGAAGAAGAAGAGGAAAAGGGACAAGCAGCCGGGAGAGACCAATGAACACAGCGAATGTTTCCTAAATCCTTGCCTTTCACTTCCTCCGATTACAGACCTGAGCGCTCCTAAGAAATGCCGAGCGCGCTTTGGCCTTGATCAACAGAATAACTGGTGCGGCCCTTGCAGGAGAAAAAAAAAGTGCGTTCGCTACATACAAGGTGAAGGCAGCTGCCTCAGCCCACCCTCTTCAGATGGAAGCTTACTAGATTCGCCTCCCCCCTCCCCGAACCTGCTAGGCTCCCCTCCCCGAGACGCCAAGTCACAGACTGAGCAGACCCAGCCTCTGTCGCTGTCCCTGAAGCCCGACCCCCTGGCCCACCTGTCCATGATGCCTCCGCCACCCGCCCTCCTGCTCGCTGAGGCCACCCACAAGGCCTCCGCCCTCTGTCCCAACGGGGCCCTGGACCTGCCCCCAGCCGCTTTGCAGCCTGCCGCCCCCTCCTCATCAATTGCACAGCCGTCGACTTCTTCCTTACATTCCCACAGCTCCCTGGCCGGGACCCAGCCCCAGCCGCTGTCGCTCGTCACCAAGTCTTTAGAATAG MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELSNKVPVVQHPHHVHPLTPLITYSNEHFTPGNPPPHLPADVDPKTGIPRPPHPPDISPYYPLSPGTVGQIPHPLGWLVPQQGQPVYPITTGGFRHPYPTALTVNASMSRFPPHMVPPHHTLHTTGIPHPAIVTPTVKQESSQSDVGSLHSSKHQDSKKEEEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKRDKQPGETNEHSECFLNPCLSLPPITDLSAPKKCRARFGLDQQNNWCGPCRRKKKCVRYIQGEGSCLSPPSSDGSLLDSPPPSPNLLGSPPRDAKSQTEQTQPLSLSLKPDPLAHLSMMPPPPALLLAEATHKASALCPNGALDLPPAALQPAAPSSSIAQPSTSSLHSHSSLAGTQPQPLSLVTKSLE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Stomach,Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation TRUE transcription factor 7-like 2 1 Yes colorectal epithelial oncogene, fusion translocation 31066 HEATR5A::LINC02282 ENSG00000129493.15::ENSG00000257056.3 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA HEATR5A ENSG00000129493.15 protein_coding - - chr14:31291788-31420550:- chr14:31307893:- chr14:31760994-31889756:- chr14:31777099:- LINC02282 ENSG00000257056.3 lncRNA - - chr14:28782909-28785798:- chr14:28784530:- chr14:29252115-29255004:- chr14:29253736:- chr14:31307543 chr14:28784728 NA NA chr14:31776749 chr14:29253934 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 23 11 23 11 ONLY_REF_SPLICE YES_LDAS 0.3662 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31067 VPS54::WDPCP ENSG00000143952.20::ENSG00000143951.16 NCIH508 SRR8615809 SRR8670690 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA VPS54 ENSG00000143952.20 protein_coding - - chr2:63892146-64019428:- chr2:63965835:- chr2:64119280-64246562:- chr2:64192969:- WDPCP ENSG00000143951.16 protein_coding - - chr2:63119559-63827843:- chr2:63711591:- chr2:63346694-64054977:- chr2:63938725:- chr2:63964159,chr2:63964162 chr2:63712901,chr2:63712901 NA NA chr2:64191293,chr2:64191296 chr2:63940035,chr2:63940035 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.06Mb];NEIGHBORS[64303] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1292 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31074 ANKRD11::ZNF585B ENSG00000167522.17::ENSG00000245680.11 NCIH460 SRR8615810 SRR8670687 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1371 FALSE NA FALSE NA ANKRD11 ENSG00000167522.17 protein_coding - - chr16:89267630-89490561:- chr16:89418284:- chr16:89334038-89556969:- chr16:89484692:- ZNF585B ENSG00000245680.11 protein_coding - - chr19:37181579-37218153:- chr19:37207254:- chr19:37672481-37709055:- chr19:37698156:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr19] 20 0 20 0 ONLY_REF_SPLICE YES_LDAS 0.1897 GT 1.9899 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31084 PVT1::ENSG00000286266 ENSG00000249859.14::ENSG00000286266.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1372 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ ENSG00000286266 ENSG00000286266.1 lncRNA + + chr8:127578473-127636867:+ chr8:127590706:+ chr8:128590718-128649112:+ chr8:128602951:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 247 108 247 108 ONLY_REF_SPLICE YES_LDAS 3.7486 GT 1.8295 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31085 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1373 TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 175 225 175 128.68 ONLY_REF_SPLICE YES_LDAS 3.2067 GT 1.8295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31087 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1374 TRUE 2468 TRUE 961 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127820523,chr8:127820517 chr8:127346602,chr8:127346608 NA NA chr8:128832769,chr8:128832763 chr8:128358848,chr8:128358854 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 87 269 87 140.32 ONLY_REF_SPLICE YES_LDAS 2.4004 GT 1.8295 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31088 NFIB-AS1::PCAT1 ENSG00000225472.2::ENSG00000253438.5 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1378 FALSE NA FALSE NA NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14317345:+ chr9:14317072-14358489:+ chr9:14317344:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589192:+ chr8:127568568-128431295:+ chr8:127601437:+ chr9:14329934,chr9:14329698,chr9:14329931,chr9:14329928,chr9:14329758,chr9:14329900 chr8:126577163,chr8:126577123,chr8:126577160,chr8:126577154,chr8:126577106,chr8:126577154 NA NA chr9:14329933,chr9:14329697,chr9:14329930,chr9:14329927,chr9:14329757,chr9:14329899 chr8:127589408,chr8:127589368,chr8:127589405,chr8:127589399,chr8:127589351,chr8:127589399 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 62 24 62 24 ONLY_REF_SPLICE YES_LDAS 0.9081 GT 1.9329 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31091 ERBB4::ENSG00000273118 ENSG00000178568.16::ENSG00000273118.1 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ERBB4 ENSG00000178568.16 protein_coding - - chr2:211375717-212538841:- chr2:212538449:- chr2:212240442-213403565:- chr2:213403173:- ENSG00000273118 ENSG00000273118.1 lncRNA - - chr2:212581357-213021545:- chr2:212581408:- chr2:213446081-213886269:- chr2:213446132:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB4:ArcherDX_panel","ERBB4:FoundationOne_panel","ERBB4:Oncogene"] 51 6 51 6 ONLY_REF_SPLICE YES_LDAS 0.6019 GT 1.9899 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-4 TK EGFR Q15303 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE erb-b2 receptor tyrosine kinase 4 1 Yes melanoma, gastric, NSCLC epithelial oncogene, TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 31092 MKNK2::ISG15 ENSG00000099875.16::ENSG00000187608.10 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MKNK2 ENSG00000099875.16 protein_coding - - chr19:2037465-2051244:- chr19:2041840:- chr19:2037464-2051243:- chr19:2041839:- ISG15 ENSG00000187608.10 protein_coding + + chr1:1001138-1014540:+ chr1:1008194:+ chr1:936518-949920:+ chr1:943574:+ chr19:2041418,chr19:2041421 chr1:1002821,chr1:1002818 NA NA chr19:2041417,chr19:2041420 chr1:938201,chr1:938198 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr1] 33 7 33 7 ONLY_REF_SPLICE YES_LDAS 0.4224 GT 1.7465 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN MAP kinase-interacting serine/threonine-protein kinase 2 CAMK MAPKAPK MNK Q9HBH9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31094 PCAT1::NFIB-AS1 ENSG00000253438.5::ENSG00000225472.2 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1379 FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126589290:+ chr8:127568568-128431295:+ chr8:127601535:+ NFIB-AS1 ENSG00000225472.2 lncRNA + + chr9:14317073-14358490:+ chr9:14357152:+ chr9:14317072-14358489:+ chr9:14357151:+ chr8:126608420,chr8:126608538,chr8:126608666 chr9:14329841,chr9:14330000,chr9:14330152 NA NA chr8:127620665,chr8:127620783,chr8:127620911 chr9:14329840,chr9:14329999,chr9:14330151 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 3 17 2.55 ONLY_REF_SPLICE YES_LDAS 0.2064 GT 1.4295 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31101 NIN::TRIM9 ENSG00000100503.27::ENSG00000100505.14 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1388 FALSE NA FALSE NA NIN ENSG00000100503.27 protein_coding - - chr14:50719763-50831162:- chr14:50830464:- chr14:51186481-51297880:- chr14:51297182:- TRIM9 ENSG00000100505.14 protein_coding - - chr14:50975262-51096061:- chr14:51025360:- chr14:51441980-51562779:- chr14:51492078:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NIN:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.14Mb] 12 0 12 0 ONLY_REF_SPLICE YES_LDAS 0.1267 GT 1.5058 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ninein (GSK3B interacting protein) 1 MPN leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31108 HELLS::TBC1D12 ENSG00000119969.16::ENSG00000108239.9 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1383 FALSE NA FALSE NA HELLS ENSG00000119969.16 protein_coding + + chr10:94545329-94613905:+ chr10:94546498:+ chr10:96305086-96373662:+ chr10:96306255:+ TBC1D12 ENSG00000108239.9 protein_coding + + chr10:94402541-94536332:+ chr10:94493365:+ chr10:96162298-96296089:+ chr10:96253122:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.03Mb];NEIGHBORS_OVERLAP:+:+:[34496] 9 10 9 10 ONLY_REF_SPLICE YES_LDAS 0.2006 GT 1.6895 AG 1.8256 ENST00000698673.1 1-153 ENST00000225235.5 1212-2328 chr10|+|[0]94545922-94545952[0]|[1]94546377-94546498[2]<==>chr10|+|[2]94493365-94493447[0]|[1]94497055-94497172[1]|[2]94500221-94500327[0]|[1]94507267-94507347[0]|[1]94510091-94510179[2]|[0]94511583-94511654[2]|[0]94521955-94522083[2]|[0]94522344-94522453[1]|[2]94531202-94531460[2]|[0]94533028-94533096[2] atgccagcggaacggcccgcgggcagcggcggctcggaggctccagcaatggttgaacaactggacactgctgtgattaccccggccatgctagaagaggaagaacagcttgaagctgctggactagagagagagcggaagatgctggaaaagAAATCTTCCTGCCAAATCTGTGGAAGAAGCTTTACGTCACCGACAAGAATACGATGAGATGGTGGCTGAGGCTAAAAAACGAGAAATTAAGGAAGCACATAAAAGAAAAAGAATCATGAAAGAACGATTTAAGCAGGAAGAAAATATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTGCCCAATTGGGAAGTAATGCGTAGTACAAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTGAACTTTATGAAATCTTCCTCTCAAGAGCAAAAGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATACAGAAGGTGTATCTGTTGCTGATCGAGAGGCCAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGGGTGGTCCATATCATGATGTCTTGCATAGTATTTTAGGGGCATACACATGCTACAGGCCTGATGTTGGTTATGTCCAAGGGATGTCCTTCATTGCAGCAGTACTCATTCTCAATTTGGAAGAGGCAGATGCCTTTATCGCATTTGCCAATCTCCTGAATAAGCCATGCCAGTTGGCCTTTTTTCGTGTGGATCACAGCATGATGTTGAAATATTTTGCAACATTTGAAGTATTCTTTGAAGAAAATCTTTCCAAATTATTTCTTCACTTCAAATCTTACAGTCTTACACCAGATATATACTTGATAGACTGGATCTTCACACTATATAGCAAATCACTACCACTTGATCTGGCCTGTCGAGTCTGGGATGTATTTTGCAGAGATGGGGAAGAATTTTTATTTAGGACTGGATTAGGAATCCTCCGATTATATGAAGATATTCTCCTGCAGATGGACTTTATTCATATAGCACAGTTTCTAACTAAATTGCCAGAAGATATCACATCGGAAAAGCTGTTCAGTTGTATTGCAGCCATTCAGATGCAGAATAGCACCAAAAAATGGACTCAGGTCTTTGCATCTGTAATGAAGGATATTAAAGAAGGAGACAAGAACAGTAGTCCTGCTTTGAAAAGCTAG MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKKSSCQICGRSFTSPTRIR*DGG*G*KTRN*GST*KKKNHERTI*AGRKYCKCNGNLDQ*NTAQLGSNA*YKKSSRIVVAGIAP*CPWESLESSCRK*TKYHS*TL*NLPLKSKRTVEKFQ*NKFRE*YRRCICC*SRGQSGIN*VGHIPYISISLHLSEGWSIS*CLA*YFRGIHMLQA*CWLCPRDVLHCSSTHSQFGRGRCLYRICQSPE*AMPVGLFSCGSQHDVEIFCNI*SIL*RKSFQIISSLQILQSYTRYILDRLDLHTI*QITTT*SGLSSLGCILQRWGRIFI*DWIRNPPII*RYSPADGLYSYSTVSN*IARRYHIGKAVQLYCSHSDAE*HQKMDSGLCICNEGY*RRRQEQ*SCFEKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96348147 FALSE 96281712 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31109 APBA1::PTAR1 ENSG00000107282.9::ENSG00000188647.13 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1387 TRUE 2480 TRUE 966 APBA1 ENSG00000107282.9 protein_coding - - chr9:69427532-69672371:- chr9:69672153:- chr9:72042448-72287287:- chr9:72287069:- PTAR1 ENSG00000188647.13 protein_coding - - chr9:69709522-69760011:- chr9:69741858:- chr9:72324438-72374927:- chr9:72356774:- chr9:69593402,chr9:69593404,chr9:69593404 chr9:69759819,chr9:69759787,chr9:69759820 NA NA chr9:72208318,chr9:72208320,chr9:72208320 chr9:72374735,chr9:72374703,chr9:72374736 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.04Mb];LOCAL_REARRANGEMENT:-:[37216] 8 5 8 2.11 ONLY_REF_SPLICE YES_LDAS 0.1068 GT 1.9329 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31111 KCNC2::CAPS2 ENSG00000166006.14::ENSG00000180881.21 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1385 TRUE 2479 TRUE 965 KCNC2 ENSG00000166006.14 protein_coding - - chr12:75040077-75209839:- chr12:75207297:- chr12:75433857-75603619:- chr12:75601077:- CAPS2 ENSG00000180881.21 protein_coding - - chr12:75275979-75390928:- chr12:75293367:- chr12:75669759-75784708:- chr12:75687147:- chr12:75050827,chr12:75050831 chr12:75297030,chr12:75297031 NA NA chr12:75444607,chr12:75444611 chr12:75690810,chr12:75690811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BTB_2|10-40|1.4e-07^LCE|54-95|0.002^BTB_2|100-151|1.2e-19^BTB_3|110-130|9.8e-06^Ion_trans|229-481|1.9e-51^Ion_trans_2|232-245|0.13^Ion_trans_2|390-473|1.6e-15^LCE|488-552|0.0031 none ["CAPS2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.07Mb];LOCAL_REARRANGEMENT:-:[66111] 8 9 8 4.5 ONLY_REF_SPLICE YES_LDAS 0.132 GT 1.7819 AG 1.9899 ENST00000350228.6 1-687 ENST00000393284.8 1045-1788 chr12|-|[2]75207297-75207983[0]<==>chr12|-|[2]75278890-75279065[1]|[0]75282251-75282347[0]|[2]75284961-75285080[0]|[2]75289621-75289775[1]|[0]75291744-75291820[2]|[1]75293249-75293367[0] atgggcaagatcgagaacaacgagagggtgatcctcaatgtcgggggcacccggcacgaaacctaccgcagcaccctcaagaccctgcctggaacacgcctggcccttcttgcctcctccgagcccccaggcgactgcttgaccacggcgggcgacaagctgcagccgtcgccgcctccactgtcgccgccgccgagagcgcccccgctgtcccccgggccaggcggctgcttcgagggcggcgcgggcaactgcagttcccgcggcggcagggccagcgaccatcccggtggcggccgcgagttcttcttcgaccggcacccgggcgtcttcgcctatgtgctcaattactaccgcaccggcaagctgcactgccccgcagacgtgtgcgggccgctcttcgaggaggagctggccttctggggcatcgacgagaccgacgtggagccctgctgctggatgacctaccggcagcaccgcgacgccgaggaggcgctggacatcttcgagacccccgacctcattggcggcgaccccggcgacgacgaggacctggcggccaagaggctgggcatcgaggacgcggcggggctcgggggccccgacggcaaatctggccgctggaggaggctgcagccccgcatgtgggccctcttcgaagacccctactcgtccagagccgccaggGGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAACATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTATAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAG MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRAPPLSPGPGGCFEGGAGNCSSRGGRASDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARGATLTFLSSDHLSLPESIKENTLLKLRITNIDQIALDSLKTASMEQEDDIIIQETNDRLVFKAIQDVLKEKLHKRGVRILTGLGKYFQQLDKEGNGLLDKADFKQALKVFHLEVSEKDFESAWLILNDNGNGKVDYGEFKRGIIGEMNEYRKSYVRKAFMKLDFNKSGSVPIINIRKCYCAKKHSQVISGHSTEEEIKSSFLETLKVACSKSDEVSYGEFEDYYEGLSIGIVDDEDFVNILRTPWGI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31114 APBA1::PTAR1 ENSG00000107282.9::ENSG00000188647.13 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1386 TRUE 2480 TRUE 966 APBA1 ENSG00000107282.9 protein_coding - - chr9:69427532-69672371:- chr9:69672153:- chr9:72042448-72287287:- chr9:72287069:- PTAR1 ENSG00000188647.13 protein_coding - - chr9:69709522-69760011:- chr9:69750950:- chr9:72324438-72374927:- chr9:72365866:- chr9:69593402,chr9:69593404,chr9:69593404 chr9:69759819,chr9:69759787,chr9:69759820 NA NA chr9:72208318,chr9:72208320,chr9:72208320 chr9:72374735,chr9:72374703,chr9:72374736 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.04Mb];LOCAL_REARRANGEMENT:-:[37216] 7 9 7 6.89 ONLY_REF_SPLICE YES_LDAS 0.1467 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31116 TYW1::ZNF92 ENSG00000198874.14::ENSG00000146757.14 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67067403:+ chr7:66460160-66704501:+ chr7:66532390:+ ZNF92 ENSG00000146757.14 protein_coding + + chr7:65373799-65401136:+ chr7:65387902:+ chr7:64838712-64866049:+ chr7:64852815:+ chr7:67080981,chr7:67080975 chr7:65375718,chr7:65375709 NA NA chr7:66545968,chr7:66545962 chr7:64840631,chr7:64840622 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Flavodoxin_1|81-218|4.9e-31^DUF3280|342-380|5.9e-05^Radical_SAM|413-591|8.6e-16^Wyosine_form|595-657|9.9e-28 KRAB-PARTIAL|~4-44|2.5e-26^zf-C2HE|51-79|8.8^zf-C2H2|62-70|6.5^zf_UBZ|80-84|8.1^zf-C2HC_2|80-89|1.3^MRP-S23|130-159|5.6^zf-H2C2_2|139-150|3.2^zf-C2H2_8|141-191|1.1^C1_4|156-196|0.049^zf-H2C2_2|165-182|1.9e-05^zf-AN1|171-184|0.36^zf-C2H2_6|173-196|0.59^Zn-ribbon_8|173-185|6.1^zf-C2H2_8|173-221|0.0031^TBPIP_C|173-195|4.4^zf-C2H2|174-195|0.13^zf-C2H2_4|179-195|0.27^zf-H2C2_2|188-211|8.6e-09^C1_4|190-223|0.055^Rep_fac-A_C|191-211|0.26^HVO_2753_ZBP|197-207|0.22^HVO_2753_ZBP|197-235|0.059^DUF6083|198-221|0.017^zf-HIT|198-208|0.053^Zn-ribbon_8|199-240|2.8e-05^zf_UBZ|200-211|0.012^zf-C2H2_11|200-220|0.018^TBPIP_C|200-219|0.03^zf-AN1|200-210|0.16^DUF6063|200-222|5.4^ZZ|200-211|0.15^zf-C2H2|201-223|9.5e-07^zf-C2H2_4|201-223|0.00072^zf-C2H2_6|201-223|0.00062^zf-C2H2_jaz|201-220|0.0082^Desulfoferrod_N|201-208|0.045^zf-trcl|201-238|0.045^zf-RING_7|201-207|0.81^DYW_deaminase|201-223|0.25^DNA_RNApol_7kD|201-210|0.18^XPA_N|202-211|0.0083^YhfH|202-211|0.072^PknG_rubred|202-223|0.24^zf-C2HC_2|202-211|0.67^C1_4|203-251|0.033^HNH|203-223|0.015^PknG_rubred|203-250|0.067^ADK_lid|203-211|0.29^DUF6791|215-243|0.65^zf-H2C2_2|216-240|9.1e-12^Rep_fac-A_C|218-240|0.026^zf-RING_7|222-235|0.054^zf-HIT|226-236|0.068^DUF6083|227-249|0.22^zf-AN1|227-238|0.062^HVO_2753_ZBP|228-263|0.085^ZZ|228-239|0.17^zf-C2H2|229-251|1.3e-09^zf-C2H2_4|229-251|1.7e-05^zf-C2H2_6|229-251|6.9e-06^Zn-ribbon_8|229-240|0.0031^zf_UBZ|229-241|0.013^zf-C2H2_jaz|229-248|0.00053^Desulfoferrod_N|229-236|0.045^zf-C2H2_11|229-248|0.071^TBPIP_C|229-248|0.027^DNA_RNApol_7kD|229-237|0.17^XPA_N|230-241|0.0035^YhfH|230-239|0.044^C1_4|230-266|0.025^PknG_rubred|230-272|0.018^zf-C2HC_2|230-247|0.22^MRP-S23|231-256|0.21^DYW_deaminase|231-252|0.59^HNH|231-251|0.014^ADK_lid|231-264|0.013^zf-C2H2_8|233-281|0.0028^DUF6791|242-277|0.36^zf-H2C2_2|243-268|2.9e-12^Rep_fac-A_C|247-268|0.027^zf-RING_7|250-263|0.054^DUF6083|254-278|0.097^zf-C2HE|254-279|0.056^zf-HIT|254-264|0.068^zf-trcl|255-293|0.12^zf-AN1|255-266|0.062^HVO_2753_ZBP|256-291|0.021^ZZ|256-267|0.18^zf-C2H2|257-279|1.2e-09^zf-C2H2_4|257-279|7.7e-06^zf-C2H2_6|257-279|5.3e-05^Zn-ribbon_8|257-292|0.00018^zf_UBZ|257-269|0.011^zf-C2H2_jaz|257-277|0.00018^Desulfoferrod_N|257-264|0.045^zf-C2H2_11|257-278|0.023^TBPIP_C|257-281|0.011^DNA_RNApol_7kD|257-265|0.17^XPA_N|258-269|0.0033^YhfH|258-267|0.044^PknG_rubred|258-300|0.04^zf-C2HC_2|258-278|0.033^MRP-S23|259-284|0.13^C1_4|259-294|0.041^DYW_deaminase|259-279|6.7^HNH|259-275|0.079^ADK_lid|259-293|0.033^zf-H2C2_2|272-296|9.9e-12^Rep_fac-A_C|275-298|0.08^zf-RING_7|277-291|0.04^zf-C2HE|280-309|0.00042^DUF6083|282-308|0.17^zf-AN1|282-294|0.039^zf-HIT|282-292|0.055^zf-C2H2_8|283-333|0.00064^ZZ|283-296|0.096^zf-C2H2|285-307|6.8e-07^zf-C2H2_4|285-307|7.4e-05^zf-C2H2_6|285-309|6.6e-06^Zn-ribbon_8|285-298|0.0013^zf_UBZ|285-297|0.0099^zf-C2H2_jaz|285-295|0.13^Desulfoferrod_N|285-292|0.035^zf-C2H2_11|285-306|0.05^TBPIP_C|285-308|0.018^DUF6063|285-321|0.23^DNA_RNApol_7kD|285-292|0.17^XPA_N|286-294|0.01^YhfH|286-296|0.02^zf-C2HC_2|286-305|0.18^C1_4|287-324|0.048^HNH|287-298|0.76^ADK_lid|287-320|0.068^DYW_deaminase|297-334|0.27^zf-H2C2_2|300-322|5.2e-10^zf-RING_7|304-319|0.0086^Rep_fac-A_C|304-324|0.21^DUF6083|308-333|0.17^zf-C2HE|308-331|0.00086^zf-trcl|309-322|0.002^HVO_2753_ZBP|311-319|0.018^zf-AN1|311-322|0.053^ZZ|311-320|0.19^zf-HIT|311-320|0.13^PknG_rubred|311-334|0.82^zf-C2H2|313-335|8.8e-06^zf-C2H2_4|313-335|0.00065^zf-C2H2_6|313-335|0.0017^Zn-ribbon_8|313-326|0.00071^zf_UBZ|313-323|0.017^zf-C2H2_jaz|313-322|0.3^Desulfoferrod_N|313-324|0.016^zf-C2H2_11|313-331|0.25^TBPIP_C|313-329|0.027^DUF6063|313-340|0.17^DNA_RNApol_7kD|313-323|1.5^XPA_N|314-322|0.013^YhfH|314-322|0.11^zf-C2HC_2|314-332|0.52^C1_4|315-351|0.11^HNH|315-335|0.32^ADK_lid|315-324|1^zf-H2C2_2|328-352|1.7e-12^DUF6791|329-359|0.34^zf-C2H2_8|331-361|0.11^Rep_fac-A_C|331-354|0.016^zf-RING_7|334-347|0.054^PknG_rubred|336-363|0.2^DUF6083|338-361|0.088^zf-C2HE|338-359|0.00049^zf-HIT|338-348|0.068^zf-trcl|339-350|0.077^HVO_2753_ZBP|339-347|0.027^zf-AN1|339-350|0.064^ZZ|339-352|0.11^zf-C2H2|341-363|1.2e-08^zf-C2H2_4|341-363|7.4e-05^zf-C2H2_6|341-363|2.5e-06^Zn-ribbon_8|341-356|0.00053^zf_UBZ|341-353|0.0092^zf-C2H2_jaz|341-351|0.091^Desulfoferrod_N|341-348|0.042^zf-C2H2_11|341-351|0.24^TBPIP_C|341-363|0.017^DNA_RNApol_7kD|341-350|0.27^XPA_N|342-350|0.012^YhfH|342-352|0.018^C1_4|342-379|0.03^zf-C2HC_2|342-352|0.61^MRP-S23|343-369|1.5^DYW_deaminase|343-363|0.25^HNH|343-363|0.054^ADK_lid|343-378|0.0015^zf-C2H2_8|345-390|0.0053^DUF6791|354-390|0.17^zf-H2C2_2|355-380|1.7e-12^Rep_fac-A_C|359-381|0.059^zf-RING_7|362-375|0.08^zf-C2HE|366-387|0.056^zf-HIT|366-376|0.03^zf-trcl|367-409|0.09^DUF6083|367-388|0.43^zf-AN1|367-378|0.036^ZZ|367-378|0.032^zf-C2H2|369-391|1.6e-09^zf-C2H2_4|369-391|1.3e-05^zf-C2H2_6|369-391|2.4e-05^Zn-ribbon_8|369-405|0.00067^zf_UBZ|369-387|0.003^zf-C2H2_jaz|369-389|0.0011^Desulfoferrod_N|369-376|0.16^zf-C2H2_11|369-390|0.028^TBPIP_C|369-391|0.045^HVO_2753_ZBP|369-403|0.24^DNA_RNApol_7kD|369-378|0.21^XPA_N|370-381|0.001^YhfH|370-380|0.014^PknG_rubred|370-419|0.084^zf-C2HC_2|370-389|0.073^C1_4|371-406|0.02^HNH|371-387|0.34^zf-C2H2_8|373-416|0.0077^zf-H2C2_2|384-408|1.4e-12^Rep_fac-A_C|387-408|0.23^zf-RING_7|389-403|0.014^DUF6083|389-417|0.064^zf-C2HE|394-415|0.09^zf-HIT|394-404|0.068^zf-AN1|395-406|0.06^ADK_lid|395-408|0.41^ZZ|396-404|0.35^zf-C2H2|397-419|1e-08^zf-C2H2_4|397-419|0.00011^zf-C2H2_6|397-419|0.00063^Zn-ribbon_8|397-410|0.0029^zf_UBZ|397-416|0.00019^zf-C2H2_jaz|397-416|0.00053^Desulfoferrod_N|397-404|0.039^zf-C2H2_11|397-413|0.16^TBPIP_C|397-415|0.049^DNA_RNApol_7kD|397-406|0.15^XPA_N|398-409|0.00098^YhfH|398-408|0.036^PknG_rubred|398-437|0.13^zf-C2HC_2|398-410|0.44^C1_4|399-434|0.044^DYW_deaminase|399-420|0.14^HNH|399-419|0.033^zinc-ribbons_6|399-465|5.2^zf-C2H2_8|401-444|0.066^DUF6791|408-432|0.55^zf-H2C2_2|412-435|4.6e-11^Rep_fac-A_C|414-434|0.017^zf-RING_7|418-431|0.64^zf-C2HE|422-434|1^zf-HIT|422-432|0.02^zf-trcl|423-460|0.0001^DUF6083|423-442|0.34^zf-AN1|423-434|0.056^ZZ|423-434|0.12^HVO_2753_ZBP|424-459|0.03^ADK_lid|424-432|0.48^zf-C2H2|425-447|9e-07^zf-C2H2_4|425-447|0.00038^zf-C2H2_6|425-449|0.0013^Zn-ribbon_8|425-435|0.0037^zf_UBZ|425-437|0.01^zf-C2H2_jaz|425-445|0.18^Desulfoferrod_N|425-432|0.036^zf-C2H2_11|425-435|0.074^TBPIP_C|425-449|0.0099^DNA_RNApol_7kD|425-435|0.23^XPA_N|426-437|0.013^YhfH|426-434|0.25^PknG_rubred|426-475|0.017^zf-C2HC_2|426-444|0.022^C1_4|427-475|0.033^HNH|427-443|0.098^ADK_lid|427-460|1.7^zf-H2C2_2|441-463|2.4e-09^zf-C2HE|444-471|0.0015^Rep_fac-A_C|446-464|0.51^zf-C2H2_8|448-500|0.0087^DUF6083|448-473|0.02^zf-trcl|449-464|0.0019^zf-RING_7|449-459|0.054^zf-AN1|450-462|0.045^ZZ|451-461|0.22^zf-HIT|451-460|0.13^zf-C2H2|453-475|1e-07^zf-C2H2_4|453-475|0.00013^zf-C2H2_6|453-475|6.2e-05^Zn-ribbon_8|453-469|0.00023^zf_UBZ|453-470|0.0036^zf-C2H2_jaz|453-463|0.15^Desulfoferrod_N|453-464|0.014^zf-C2H2_11|453-472|0.037^TBPIP_C|453-472|0.024^DUF6063|453-481|0.059^DNA_RNApol_7kD|453-463|0.11^XPA_N|454-463|0.01^YhfH|454-462|0.085^zf-C2HC_2|454-472|0.89^MRP-S23|455-480|3.7^DYW_deaminase|455-475|0.22^HNH|455-476|0.042^ADK_lid|455-489|0.26^zf-H2C2_2|468-492|9.8e-11^Rep_fac-A_C|471-493|0.032^C1_4|474-490|0.19^zf-RING_7|475-487|0.096^HVO_2753_ZBP|478-487|0.016^zf-C2HE|478-492|0.31^zf-HIT|478-488|0.065^zf-trcl|479-490|0.047^DUF6083|479-500|1^zf-AN1|479-490|0.05^ZZ|479-490|0.18^zf-C2H2|481-503|1.6e-06^zf-C2H2_4|481-503|0.00049^zf-C2H2_6|481-491|0.0091^Zn-ribbon_8|481-492|0.0019^zf_UBZ|481-493|0.0071^zf-C2H2_jaz|481-500|0.0063^Desulfoferrod_N|481-488|0.039^zf-C2H2_11|481-490|0.27^TBPIP_C|481-496|0.031^DYW_deaminase|481-508|0.67^DNA_RNApol_7kD|481-488|0.13^XPA_N|482-497|0.00068^YhfH|482-492|0.016^PknG_rubred|482-526|0.078^zinc-ribbons_6|482-520|0.076^zf-C2HC_2|482-495|0.036^C1_4|483-518|0.053^HNH|483-503|0.024^ADK_lid|483-492|0.19^zf-H2C2_2|498-520|5e-07^Rep_fac-A_C|499-520|0.013^zf-C2H2_8|504-556|0.011^Desulfoferrod_N|505-516|0.0016^DUF6083|506-529|0.21^HVO_2753_ZBP|506-515|0.016^zf-AN1|506-518|0.15^zf-C2H2_11|507-518|0.079^zf-trcl|507-518|0.17^zf-RING_7|507-515|6.4^ZZ|507-518|0.04^zf-C2HE|507-520|0.5^zf-HIT|507-516|0.052^zf_UBZ|508-520|0.031^TBPIP_C|508-519|0.25^zf-C2H2|509-525|3.8e-05^zf-C2H2_4|509-524|0.04^zf-C2H2_6|509-519|0.46^Zn-ribbon_8|509-520|0.0019^DNA_RNApol_7kD|509-518|0.67^XPA_N|510-521|0.045^YhfH|510-520|0.071^zf-C2HC_2|510-522|0.0048^MRP-S23|511-539|2.8^DYW_deaminase|511-532|0.59^HNH|511-524|1.3^ADK_lid|511-523|0.07^Rep_fac-A_C|526-550|0.23^zf-H2C2_2|532-547|2.7e-05^DUF6063|537-559|2.3^Zn-ribbon_8|540-551|3.7^XPA_N|540-546|4.4^zf-C2HE|540-555|2.4^DYW_deaminase|540-559|6.2^zf-C2H2|541-557|0.0025^zf-C2H2_4|541-556|0.52^zf-C2H2_6|541-555|0.08^zf-C2H2_jaz|541-556|0.18^DUF6791|552-578|0.0051^zf-H2C2_2|554-574|0.13^YhfH|561-574|2.3^zf-C2H2_4|564-577|1.5^zf-C2H2|565-581|0.0082^zf-C2H2_6|567-574|4.6^Zn-ribbon_8|568-577|6.9^XPA_N|568-576|9.5^zf-C2H2_jaz|568-580|3.1^ADK_lid|568-582|0.42^zf-C2HC_2|569-577|0.1 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:1.59Mb] 6 5 6 4.5 ONLY_REF_SPLICE YES_LDAS 0.1109 GT 1.5058 AG 1.9899 ENST00000359626.10 1-1274 ENST00000328747.12 4-1761 chr7|+|[0]66996979-66996982[0]|[1]66998065-66998195[2]|[0]66998817-66998954[2]|[0]67009583-67009684[2]|[0]67014367-67014561[2]|[0]67017853-67018143[2]|[0]67024900-67025022[2]|[0]67049949-67050066[0]|[1]67055835-67055887[2]|[0]67067285-67067403[1]<==>chr7|+|[0]65387902-65388028[0]|[1]65388806-65388901[0]|[1]65398341-65399875[2] atggatccttctgcggatacatgggacctcttctcacctttaatatcattatggataaacaggttttacatttatttgggctttgctgttagcattagcctttggatttgtgtccagattgtcatcaagacgcagggcaagaacttacaggaaaaatctgttccaaaagcagctcaggatttgatgacaaatggttatgtctcccttcaagagaaagacatctttgtgtctggagtgaagattttttatggttctcagactggaacagcgaagggattcgcaacagttcttgctgaagcagttacatccctggatctgcctgtggccattattaatctaaaagaatatgatccagatgatcatctgatagaagaggtgactagtaaaaatgtctgtgtcttcctggttgcgacatacactgacggcctaccaactgaaagtgcagagtggttctgcaaatggttagaggaagcatccattgattttcgatttggcaaaacttacctgaagggtatgagatatgcggtatttggcctgggaaattctgcctatgctagccacttcaacaaggttggcaaaaatgttgacaagtggctctggatgcttggcgcgcatcgtgtgatgagtcgaggggagggcgactgcgacgtggttaaaagcaagcacggcagcattgaggccgacttcagagcatggaagaccaagttcatctcccagctgcaggcacttcagaaaggggagagaaagaagtcctgtggcggccactgcaagaaaggcaaatgtgaatctcaccaacatggctcagaggagagggaggaaggatctcatgagcaggatgaattgcatcatagagacaccgaggaggaagaaccctttgagagctccagtgaagaagagtttggtggtgaggaccatcagagcctaaattccattgttgatgttgaagatttgggcaaaattatggatcatgtgaagaaagaaaagagagaaaaggaacagcaggaagagaagtctggtttgttcaggaacatggggaggaatgaagatggtgaaagaagagctatgataactcctgctctccgagaagcccttactaaacaaggttatcagttgattgggagccactcgggggtgaagctttgcaggtggacaaagtccatgctccgagggagaggaggttgttacaaacacacattctatggaattgagagccatcgctgcatggaaaccaccccgagcttggcgtgtgctaataaatgtgtcttctgttggcgGGACCACTGACATTTAGGGATGTGAAAATAGAATTCTCTCTAGAGGAATGGCAATGCCTGGACACTGCGCAGCGGAATTTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTTGGTATTGCTGTCTCTAAGCCAGACCTGATCACCTGGCTGGAGCAAGGAAAAGAGCCCTGGAATCTGAAGAGACATGAGATGGTAGACAAAACCCCAGTTATGTGTTCTCATTTTGCCCAAGATGTTTGGCCAGAGCACAGCATAAAAGATTCTTTCCAAAAAGTGATACTGAGAACATATGGAAAATATGGACATGAGAATTTACAGCTAAGAAAAGACCATAAAAGTGTGGATGCATGTAAGGTGTACAAAGGAGGTTATAATGGACTTAACCAGTGTTTGACAACTACTGACAGCAAGATATTTCAGTGTGATAAATATGTGAAAGTCTTTCATAAATTTCCAAATGTAAATAGAAATAAGATAAGACATACTGGAAAGAAACCTTTCAAATGTAAAAACCGTGGCAAATCATTTTGCATGCTTTCACAATTAACTCAACATAAGAAAATTCATACTAGAGAGTATTCTTACAAATGTGAAGAATGTGGTAAAGCCTTTAACTGGTCCTCAACCCTTACTAAACATAAGATAATTCATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCGGTCCTCAAATCTTACTAAACATAAAATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCGGTCCTCAACCCTTACTAAACATAAAAGAATTCATACAGAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTTAACCAGTTCTCGATTCTTAATAAACATAAGAGAATTCATATGGAAGATAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGAGTATTCTCAATTCTTAAAAAACATAAGATAATCCATACTGGGGAAAAACCATACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTTCTCAAACCTTACTAAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGATGAATGTGGCAAAGCCTTTAACCAGTCCTCAACCCTTACTAAACATAAAAGAATTCATACGGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACAGTCCTCAACCCTTACTGAACATAAGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAGGCCTTTAGCTGGTCCTCAGCTTTTACTAAACATAAGAGAAATCATATGGAAGATAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTGTATTCTCAACCCTTACTAAACATAAAATAATTCATACTAGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCCTCAATTTTTACTAAACATAAGATAATTCACACTGAAGGGAAATCCTACAAATGTGAAAAATGTGGCAATGCTTTTAACCAGTCCTCAAACCTTACTGCACGTAAGATAATTTATACTGGAGAGAAACCCTACAAATATGAAGAATGTGACAAAGCCTTTAACAAGTTCTCAACCCTTATTACACATCAGATAATTTATACTGGAGAGAAACCCTGCAAACATGAATGTGGCAGAGCCTTTAACAAATCCTCAAATTATACTAAAGAGAAACTACAAACCTGA MDPSADTWDLFSPLISLWINRFYIYLGFAVSISLWICVQIVIKTQGKNLQEKSVPKAAQDLMTNGYVSLQEKDIFVSGVKIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYTDGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGKNVDKWLWMLGAHRVMSRGEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCESHQHGSEEREEGSHEQDELHHRDTEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDGERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKCVFCWRDH*HLGM*K*NSL*RNGNAWTLRSGIYIEM*C*RTTETWSSLVLLSLSQT*SPGWSKEKSPGI*RDMRW*TKPQLCVLILPKMFGQSTA*KILSKK*Y*EHMENMDMRIYS*EKTIKVWMHVRCTKEVIMDLTSV*QLLTARYFSVINM*KSFINFQM*IEIR*DILERNLSNVKTVANHFACFHN*LNIRKFILESILTNVKNVVKPLTGPQPLLNIR*FILEKNPTNVKNVAKLLTGPQILLNIK*FILERNPTNVKNVAKLLTGPQPLLNIKEFIQKRNPTNVKNVARPLTSSRFLINIREFIWKINPTNVKNVAKPLEYSQFLKNIR*SILGKNHTNVKNVAKPLTSSQTLLNIR*FILERNPTNVMNVAKPLTSPQPLLNIKEFIREKNPTNVKNVAKLLNSPQPLLNIR*FILERNPTNVKNVARPLAGPQLLLNIREIIWKINPTNVKNVAKPLVYSQPLLNIK*FILEKNPTNVKNVAKPLTSPQFLLNIR*FTLKGNPTNVKNVAMLLTSPQTLLHVR*FILERNPTNMKNVTKPLTSSQPLLHIR*FILERNPANMNVAEPLTNPQIILKRNYKP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31121 KCNC2::CAPS2 ENSG00000166006.14::ENSG00000180881.21 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1384 TRUE 2479 TRUE 965 KCNC2 ENSG00000166006.14 protein_coding - - chr12:75040077-75209839:- chr12:75051157:- chr12:75433857-75603619:- chr12:75444937:- CAPS2 ENSG00000180881.21 protein_coding - - chr12:75275979-75390928:- chr12:75293367:- chr12:75669759-75784708:- chr12:75687147:- chr12:75050827,chr12:75050831 chr12:75297030,chr12:75297031 NA NA chr12:75444607,chr12:75444611 chr12:75690810,chr12:75690811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BTB_2|10-40|1.4e-07^LCE|54-95|0.002^BTB_2|100-151|1.2e-19^BTB_3|110-130|9.8e-06^Ion_trans|229-481|1.9e-51^Ion_trans_2|232-245|0.13^Ion_trans_2|390-473|1.6e-15^LCE|488-552|0.0031 none ["CAPS2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.07Mb];LOCAL_REARRANGEMENT:-:[66111] 4 13 4 8.5 INCL_NON_REF_SPLICE YES_LDAS 0.132 GT 1.9329 AG 1.9899 ENST00000350228.6 1-848 ENST00000393284.8 1045-1788 chr12|-|[1]75051157-75051317[0]|[2]75207297-75207983[0]<==>chr12|-|[2]75278890-75279065[1]|[0]75282251-75282347[0]|[2]75284961-75285080[0]|[2]75289621-75289775[1]|[0]75291744-75291820[2]|[1]75293249-75293367[0] atgggcaagatcgagaacaacgagagggtgatcctcaatgtcgggggcacccggcacgaaacctaccgcagcaccctcaagaccctgcctggaacacgcctggcccttcttgcctcctccgagcccccaggcgactgcttgaccacggcgggcgacaagctgcagccgtcgccgcctccactgtcgccgccgccgagagcgcccccgctgtcccccgggccaggcggctgcttcgagggcggcgcgggcaactgcagttcccgcggcggcagggccagcgaccatcccggtggcggccgcgagttcttcttcgaccggcacccgggcgtcttcgcctatgtgctcaattactaccgcaccggcaagctgcactgccccgcagacgtgtgcgggccgctcttcgaggaggagctggccttctggggcatcgacgagaccgacgtggagccctgctgctggatgacctaccggcagcaccgcgacgccgaggaggcgctggacatcttcgagacccccgacctcattggcggcgaccccggcgacgacgaggacctggcggccaagaggctgggcatcgaggacgcggcggggctcgggggccccgacggcaaatctggccgctggaggaggctgcagccccgcatgtgggccctcttcgaagacccctactcgtccagagccgccaggtttattgcttttgcttctttattcttcatcctggtttcaattacaactttttgcctggaaacacatgaagctttcaatattgttaaaaacaagacagaaccagtcatcaatggcacaagtgttgttctacagtatgaaattgaaacggatcctgccttgacGGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAACATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTATAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAG MGKIENNERVILNVGGTRHETYRSTLKTLPGTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRAPPLSPGPGGCFEGGAGNCSSRGGRASDHPGGGREFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALFEDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSVVLQYEIETDPALTVQP*HF*VLIISAFQKASKKTHYLNSESQILIK*LWILSKLLLWNRRMI*SFKKPMIGWSSKQFKMC*KKNYIKEVFVF*LDWENIFNSWTRKEMDF*IRQILSKL*KCFT*KCLKRILSLHG*F*MTMAMARLIMENSNVVLLVK*MNTGNHMFERPL*NWISTKVAVCLL*T*ENVTVQRSILK*FQAIQQRKKSNHPF*KH*KLPAASLMKCHMVNLKITMKV*V*E**MMKTLLTSYVLHGGF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31122 CDKAL1::E2F3 ENSG00000145996.11::ENSG00000112242.16 NCIH446 SRR8615811 SRR8670688 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20649377:+ chr6:20534688-21232635:+ chr6:20649608:+ E2F3 ENSG00000112242.16 protein_coding + + chr6:20401879-20493714:+ chr6:20479846:+ chr6:20402110-20493945:+ chr6:20480077:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame UPF0004|65-145|6.3e-26^Radical_SAM-PARTIAL|208-371~|2.8e-24 none ["E2F3:Oncogene"];["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_REARRANGEMENT:+:[40742] 3 7 3 6.9 ONLY_REF_SPLICE YES_LDAS 0.1046 GT 1.6402 AG 1.7819 ENST00000274695.8 1-371 ENST00000346618.8 394-1398 chr6|+|[0]20546351-20546523[1]|[2]20548593-20548705[0]|[1]20649293-20649377[1]<==>chr6|+|[0]20479846-20479957[0]|[1]20481206-20481425[1]|[2]20482762-20482920[1]|[2]20486689-20486803[2]|[0]20488113-20488248[0]|[1]20490168-20490430[2] atgccttctgcatcctgtgatacactactggatgacatcgaagatatcgtgtctcaggaagattcaaaaccacaagataggcattttgtaagaaaggatgttgtcccgaaggtacgaaggcgaaatacccaaaaatatttgcaagaggaagaaaacagtccaccaagtgacagcactattccaggcatacagaaaatttggatacgaacatggggttgttctcataataattcagatggagaatatatggctggacagctagctgcttatggctataaaattacagaaaatgcatccgatgcagatttatggctcctgaacagttgcactgtaaaaaacccagctgaagaccactttagaaactcaattaaGCAAAGCGAAGGCTGGAGCTAGGAGAAAGCGGTCATCAGTACCTCTCAGATGGTTTAAAAACCCCCAAGGGCAAAGGAAGAGCTGCACTACGAAGTCCAGATAGTCCAAAAACTCCAAAATCTCCCTCAGAAAAAACGCGGTATGATACGTCTCTTGGTCTGCTCACCAAGAAGTTCATTCAGCTCCTGAGCCAGTCACCCGATGGGGTATTGGATTTGAACAAGGCAGCAGAAGTGCTAAAAGTGCAAAAGAGAAGGATTTATGATATCACCAACGTTCTGGAAGGCATCCACCTCATTAAGAAGAAGTCTAAAAACAACGTCCAATGGATGGGCTGCAGTCTGTCTGAGGATGGGGGCATGCTGGCCCAGTGTCAAGGCCTGTCAAAAGAAGTGACCGAGCTCAGTCAGGAAGAGAAGAAATTAGATGAACTGATCCAAAGCTGCACCCTGGACCTCAAACTGTTAACCGAGGATTCAGAGAATCAAAGGTTAGCTTATGTTACATATCAAGATATTCGAAAAATTAGTGGCCTTAAAGACCAAACTGTTATAGTTGTGAAAGCCCCTCCAGAAACAAGACTTGAAGTGCCTGACTCAATAGAGAGCCTACAAATACATTTGGCAAGTACCCAAGGGCCCATTGAGGTTTACTTATGTCCAGAAGAGACTGAAACACACAGTCCAATGAAAACAAACAACCAAGACCACAATGGGAATATCCCTAAACCCGCTTCCAAAGACTTGGCTTCAACCAACTCAGGACATAGCGATTGCTCAGTTTCTATGGGAAACCTTTCTCCTCTGGCCTCCCCAGCCAACCTCTTACAGCAGACTGAGGACCAAATTCCTTCCAACCTAGAAGGACCGTTTGTGAACTTACTGCCTCCCCTGCTGCAAGAGGACTATCTCCTGAGCCTCGGGGAGGAGGAAGGCATCAGCGATCTCTTCGATGCTTACGATTTGGAAAAGCTCCCACTGGTGGAAGACTTCATGTGTAGTTGA MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKQSEGWS*EKAVISTSQMV*KPPRAKEELHYEVQIVQKLQNLPQKKRGMIRLLVCSPRSSFSS*ASHPMGYWI*TRQQKC*KCKREGFMISPTFWKASTSLRRSLKTTSNGWAAVCLRMGACWPSVKACQKK*PSSVRKRRN*MN*SKAAPWTSNC*PRIQRIKG*LMLHIKIFEKLVALKTKLL*L*KPLQKQDLKCLTQ*RAYKYIWQVPKGPLRFTYVQKRLKHTVQ*KQTTKTTMGISLNPLPKTWLQPTQDIAIAQFLWETFLLWPPQPTSYSRLRTKFLPT*KDRL*TYCLPCCKRTIS*ASGRRKASAISSMLTIWKSSHWWKTSCVV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31127 KIAA0232::LINC01511 ENSG00000170871.12::ENSG00000250584.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1397 TRUE 2509 TRUE 972 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6782841:+ chr4:6783102-6885897:+ chr4:6784568:+ LINC01511 ENSG00000250584.4 lncRNA - - chr5:1353896-1380107:- chr5:1364691:- chr5:1354011-1380222:- chr5:1364806:- chr4:6812531 chr5:1375751 NA NA chr4:6814258 chr5:1375866 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr5] 31 0 31 0 ONLY_REF_SPLICE YES_LDAS 0.3714 GT 1.7056 AG 1.371 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31129 RERG::CBFB ENSG00000134533.6::ENSG00000067955.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1395 FALSE NA FALSE NA RERG ENSG00000134533.6 protein_coding - - chr12:15107783-15348675:- chr12:15217429:- chr12:15260717-15501609:- chr12:15370363:- CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67066682:+ chr16:67062887-67134961:+ chr16:67100585:+ chr12:15152220 chr16:67061673 NA NA chr12:15305154 chr16:67095576 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Arf-PARTIAL|4-61~|2e-10^Ras-PARTIAL|8-61~|2.5e-47^Roc-PARTIAL|8-61~|5.8e-16^DUF87|8-27|0.00015^MMR_HSR1-PARTIAL|9-61~|3.1e-08^AAA_22|9-55|0.00016^RsgA_GTPase|9-28|0.00071^GLYCAM-1|46-59|3.1 none ["CBFB:ArcherDX_panel","CBFB:Oncogene","CBFB:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr16] 24 17 24 16.93 ONLY_REF_SPLICE YES_LDAS 0.4903 GT 1.8295 AG 1.8062 ENST00000256953.6 1-61 ENST00000650873.1 283-672 chr12|-|[0]15217429-15217489[0]<==>chr16|+|[0]67066682-67066798[2]|[0]67082213-67082339[0]|[1]67093414-67093559[2] atggctaaaagtgcggaggtcaaactggcaatatttgggagagcaggcgtgggcaagtcagGTATATTTGAAGGCTCCCATGATTCTGAATGGAGTCTGTGTTATCTGGAAAGGCTGGATTGATCTCCAAAGACTGGATGGTATGGGCTGTCTGGAGTTTGATGAGGAGCGAGCCCAGCAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCTCGGAGAAGGACACGCGAATTTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGTGAGAGTTTCACAGCTGCTGGCAGTAACTGAATGGAGATCAACCAGGAAATTTTCTTCATTCTGGATACCCCCTCCTCGTGGCTGTTTCTGCATAGCTCTGACCAGTAGGGAAAACTCAAGCTGCTGGTGTGTGTTCTTTCGTCTCATTTGGAGTCATCTCATGACTGCCTCCTAG MAKSAEVKLAIFGRAGVGKSGIFEGSHDSEWSLCYLERLD*SPKTGWYGLSGV**GASPAGGCISTTGL*RGSEKDTRI*R*RQVSSGGNGGESFTAAGSN*MEINQEIFFILDTPSSWLFLHSSDQ*GKLKLLVCVLSSHLESSHDCLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 31131 ENSG00000198491::DNAJC9 ENSG00000198491.3::ENSG00000213551.7 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1399 FALSE NA FALSE NA ENSG00000198491 ENSG00000198491.3 lncRNA - - chr3:187197090-187207629:- chr3:187197765:- chr3:186914878-186925417:- chr3:186915553:- DNAJC9 ENSG00000213551.7 protein_coding - - chr10:73183362-73247255:- chr10:73243929:- chr10:74943120-75007013:- chr10:75003687:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNAJC9:Oncogene"] 17 3 17 3 INCL_NON_REF_SPLICE YES_LDAS 0.2396 GT 1.9656 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31132 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1393 TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73208619:+ chr10:74927877-75004262:+ chr10:74968377:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Vps26-PARTIAL|8-153~|9e-121^Arrestin_N|37-86|1.2e-05^Arrestin_N|108-139|0.022 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:4.00Mb] 15 22 15 12.52 ONLY_REF_SPLICE YES_LDAS 0.3297 GT 1.9899 AG 1.5656 ENST00000395098.5 1-153 ENST00000242505.11 543-1749 chr10|+|[0]69124278-69124280[2]|[0]69132898-69133047[2]<==>chr10|+|[2]73208619-73208786[1]|[2]73210251-73210438[0]|[1]73228060-73228184[2]|[0]73230422-73230525[1]|[2]73232939-73233163[1]|[2]73234817-73234940[2]|[0]73235193-73235318[2]|[0]73239312-73239384[0]|[1]73240946-73241019[2] atgagttttcttggaggcttttttggtccaatttgtgagatcgatattgttcttaatgatggggaaaccaggaaaatggcagaaatgaaaactgaagatggcaaagtagaaaaacactatctcttctatgacggagaatccgtttcaggaaagATTTGGTATAAGGGGAAAGAAGTTACATTTTTCATCTTCTTATGCTCATAAAGCATCTTCCATTGCCAAATCCTCCAGCTTTTGTTCTATGGAAAGAGATGAGGAAGACTCTATAATCGTCTCAGAAGGAATAATTGAGGAATACCTAGCATTCGATCACATAGATATAGAAGAGGGATTTCATGGGAAGAAATCAGAAGCAGCTACAGAGAAACAGAAATTAGGGTATCCTCCCATTGCTCCATTTTACTGCATGAAAGAAGATGTCCTTGCTTATGTGTTTGACAGTGTATGGTGCAAGGTTGTGAGCTGTATGGAGCAGTTGACACGTAGTCACTGGGAAGGATTTGCCTCTGATGATGAGAGTAATGTTGCAGTTACCAGACCCGATTCAGAAAGTTCCTGTGTGCTGAGTGAACTACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGCTGTACATTACCTCAAATCCGATGAGTCTCTGTCAAGCAAGCAGACATCAGCCAAATGTGAATGATCTCTTGGTTCATGGAATGCCTCTACAGCCAAGAAATCTCTCCCTAATGGACAAGCTCCTAGATCTTGATGACAAGCTACTTATGAGGCCTGGGTCCAGTACCATCCTTTCAACTCGAAATTGGCCAAATCGAGCTGTGGAGTTTAGTACATCATCTCTGTCATACACAGTGCAGTCCACCAGGAGACGCAATCCACCACCACGAACTCTTCATCCGATCAGCACGAGCCATTCATGTGCTGAAACACCAAGATCTGTGGAAGAAATCCTCAGAGGAGCCCGAGTCCCAGTGGCACCCGACTCGCTCTCCTCTCCCTCACCGACGCCCCTGAGTCGAAATAATCTGCTACCACCTATTGGCACAGCTGAAGTGGAACATGTGAGCACTGTGGGGCCACAAAGACAGATGAAACCCCATGGCGACTCTAGTCGAGCTCAAAGTGCGGTGGTGGATGAACCTAACTATCAGCAGCCACAAGAAAGGCTCCTTTTGCCCGACTTTTTCCCCAGGCCCAACACAACTCAATCATTTTTGCTGGATACACAGTATCGTCGCTCATGTGCAGTTGAGTATCCTCATCAGGCCCGACCTGGCAGGGGATCTGCAGGTCCTCAGTTACATGGGTCTACAAAATCTCAAAGCGGAGGCAGACCAGTCTCTCGAACCAGGCAGGGACCATAA MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKIWYKGKEVTFFIFLCS*SIFHCQILQLLFYGKR*GRLYNRLRRNN*GIPSIRSHRYRRGISWEEIRSSYRETEIRVSSHCSILLHERRCPCLCV*QCMVQGCELYGAVDT*SLGRICL***E*CCSYQTRFRKFLCAE*TTSFGVTASATV*GAVHYLKSDESLSSKQTSAKCE*SLGSWNASTAKKSLPNGQAPRS**QATYEAWVQYHPFNSKLAKSSCGV*YIISVIHSAVHQETQSTTTNSSSDQHEPFMC*NTKICGRNPQRSPSPSGTRLALLSLTDAPESK*SATTYWHS*SGTCEHCGATKTDETPWRL*SSSKCGGG*T*LSAATRKAPFARLFPQAQHNSIIFAGYTVSSLMCS*VSSSGPTWQGICRSSVTWVYKISKRRQTSLSNQAGTI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31137 CNNM2::ENSG00000198491 ENSG00000148842.18::ENSG00000198491.3 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CNNM2 ENSG00000148842.18 protein_coding + + chr10:102918294-103090222:+ chr10:102920101:+ chr10:104678051-104849979:+ chr10:104679858:+ ENSG00000198491 ENSG00000198491.3 lncRNA - - chr3:187197090-187207629:- chr3:187198702:- chr3:186914878-186925417:- chr3:186916490:- chr10:102942648,chr10:102942649 chr3:187203644,chr3:187203643 NA NA chr10:104702405,chr10:104702406 chr3:186921432,chr3:186921431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 3 8 3 ONLY_REF_SPLICE YES_LDAS 0.1317 GT 1.371 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31139 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73207866:+ chr10:74927877-75004262:+ chr10:74967624:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:4.00Mb] 8 22 8 6.68 INCL_NON_REF_SPLICE YES_LDAS 0.1758 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31142 KIAA0232::LINC01511 ENSG00000170871.12::ENSG00000250584.4 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1398 TRUE 2509 TRUE 972 KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6804606:+ chr4:6783102-6885897:+ chr4:6806333:+ LINC01511 ENSG00000250584.4 lncRNA - - chr5:1353896-1380107:- chr5:1364691:- chr5:1354011-1380222:- chr5:1364806:- chr4:6812531 chr5:1375751 NA NA chr4:6814258 chr5:1375866 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr5] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1558 GT 1.6729 AG 1.371 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31145 VPS26A::FAM149B1 ENSG00000122958.15::ENSG00000138286.15 T47D SRR8615812 SRR8670674 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 2507 TRUE 970 VPS26A ENSG00000122958.15 protein_coding + + chr10:69123512-69174412:+ chr10:69133047:+ chr10:70883268-70934168:+ chr10:70892803:+ FAM149B1 ENSG00000138286.15 protein_coding + + chr10:73168119-73244504:+ chr10:73208697:+ chr10:74927877-75004262:+ chr10:74968455:+ chr10:69145291,chr10:69145281,chr10:69145314,chr10:69145195,chr10:69145225,chr10:69145281 chr10:73197237,chr10:73197283,chr10:73197283,chr10:73197166,chr10:73197191,chr10:73197224 NA NA chr10:70905047,chr10:70905037,chr10:70905070,chr10:70904951,chr10:70904981,chr10:70905037 chr10:74956995,chr10:74957041,chr10:74957041,chr10:74956924,chr10:74956949,chr10:74956982 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Vps26-PARTIAL|8-153~|9e-121^Arrestin_N|37-86|1.2e-05^Arrestin_N|108-139|0.022 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:4.00Mb] 6 16 6 2.73 INCL_NON_REF_SPLICE YES_LDAS 0.1046 GT 1.9899 AG 1.7232 ENST00000395098.5 1-153 ENST00000242505.11 621-1749 chr10|+|[0]69124278-69124280[2]|[0]69132898-69133047[2]<==>chr10|+|[2]73208697-73208786[1]|[2]73210251-73210438[0]|[1]73228060-73228184[2]|[0]73230422-73230525[1]|[2]73232939-73233163[1]|[2]73234817-73234940[2]|[0]73235193-73235318[2]|[0]73239312-73239384[0]|[1]73240946-73241019[2] atgagttttcttggaggcttttttggtccaatttgtgagatcgatattgttcttaatgatggggaaaccaggaaaatggcagaaatgaaaactgaagatggcaaagtagaaaaacactatctcttctatgacggagaatccgtttcaggaaagCTTTTGTTCTATGGAAAGAGATGAGGAAGACTCTATAATCGTCTCAGAAGGAATAATTGAGGAATACCTAGCATTCGATCACATAGATATAGAAGAGGGATTTCATGGGAAGAAATCAGAAGCAGCTACAGAGAAACAGAAATTAGGGTATCCTCCCATTGCTCCATTTTACTGCATGAAAGAAGATGTCCTTGCTTATGTGTTTGACAGTGTATGGTGCAAGGTTGTGAGCTGTATGGAGCAGTTGACACGTAGTCACTGGGAAGGATTTGCCTCTGATGATGAGAGTAATGTTGCAGTTACCAGACCCGATTCAGAAAGTTCCTGTGTGCTGAGTGAACTACATCCTTTGGTGTTACCGCGAGTGCCACAGTCTAAGGTGCTGTACATTACCTCAAATCCGATGAGTCTCTGTCAAGCAAGCAGACATCAGCCAAATGTGAATGATCTCTTGGTTCATGGAATGCCTCTACAGCCAAGAAATCTCTCCCTAATGGACAAGCTCCTAGATCTTGATGACAAGCTACTTATGAGGCCTGGGTCCAGTACCATCCTTTCAACTCGAAATTGGCCAAATCGAGCTGTGGAGTTTAGTACATCATCTCTGTCATACACAGTGCAGTCCACCAGGAGACGCAATCCACCACCACGAACTCTTCATCCGATCAGCACGAGCCATTCATGTGCTGAAACACCAAGATCTGTGGAAGAAATCCTCAGAGGAGCCCGAGTCCCAGTGGCACCCGACTCGCTCTCCTCTCCCTCACCGACGCCCCTGAGTCGAAATAATCTGCTACCACCTATTGGCACAGCTGAAGTGGAACATGTGAGCACTGTGGGGCCACAAAGACAGATGAAACCCCATGGCGACTCTAGTCGAGCTCAAAGTGCGGTGGTGGATGAACCTAACTATCAGCAGCCACAAGAAAGGCTCCTTTTGCCCGACTTTTTCCCCAGGCCCAACACAACTCAATCATTTTTGCTGGATACACAGTATCGTCGCTCATGTGCAGTTGAGTATCCTCATCAGGCCCGACCTGGCAGGGGATCTGCAGGTCCTCAGTTACATGGGTCTACAAAATCTCAAAGCGGAGGCAGACCAGTCTCTCGAACCAGGCAGGGACCATAA MSFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKLLFYGKR*GRLYNRLRRNN*GIPSIRSHRYRRGISWEEIRSSYRETEIRVSSHCSILLHERRCPCLCV*QCMVQGCELYGAVDT*SLGRICL***E*CCSYQTRFRKFLCAE*TTSFGVTASATV*GAVHYLKSDESLSSKQTSAKCE*SLGSWNASTAKKSLPNGQAPRS**QATYEAWVQYHPFNSKLAKSSCGV*YIISVIHSAVHQETQSTTTNSSSDQHEPFMC*NTKICGRNPQRSPSPSGTRLALLSLTDAPESK*SATTYWHS*SGTCEHCGATKTDETPWRL*SSSKCGGG*T*LSAATRKAPFARLFPQAQHNSIIFAGYTVSSLMCS*VSSSGPTWQGICRSSVTWVYKISKRRQTSLSNQAGTI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31146 CDCA8::GRIK3 ENSG00000134690.11::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1400 TRUE 2514 TRUE 974 CDCA8 ENSG00000134690.11 protein_coding + + chr1:37692481-37709719:+ chr1:37693033:+ chr1:38158153-38175391:+ chr1:38158705:+ GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36891096:- chr1:37261128-37500116:- chr1:37356697:- chr1:37697327,chr1:37697328 chr1:36904721,chr1:36904720 NA NA chr1:38162999,chr1:38163000 chr1:37370322,chr1:37370321 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nbl1_Borealin_N|20-75|1.5e-24^Borealin|34-47|1.1^Borealin|118-120|0.61^Borealin-PARTIAL|163-223~|2.1e-39^Axin_b-cat_bind|194-207|4.7e-05 ANF_receptor-PARTIAL|~116-399|1e-74^Peripla_BP_6-PARTIAL|~116-313|4.3e-07^Lig_chan-Glu_bd|368-382|0.66^Lig_chan-Glu_bd|435-547|1.5e-49^SBP_bac_3|459-549|8.3e-14^Lig_chan|563-832|2.8e-54^SBP_bac_3|720-800|1.1e-06 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.66Mb] 96 82 96 53.92 ONLY_REF_SPLICE YES_LDAS 2.0698 GT 1.9329 AG 1.9329 ENST00000327331.2 1-223 ENST00000373091.8 116-2760 chr1|+|[0]37692691-37692784[0]|[1]37692905-37693033[0]<==>chr1|-|[2]36801851-36802045[0]|[2]36804987-36805237[1]|[0]36806104-36806326[0]|[2]36817060-36817277[1]|[0]36819736-36819854[2]|[1]36825603-36825826[0]|[2]36841736-36841939[0]|[2]36850311-36850424[0]|[2]36853615-36853722[0]|[2]36859108-36859251[0]|[2]36859844-36860017[0]|[2]36869748-36869801[0]|[2]36872188-36872369[1]|[0]36880634-36880891[1]|[0]36890920-36891096[1] atggctcctaggaagggcagtagtcgggtggccaagaccaactccttacggaggcggaagctcgcctcctttctgaaagacttcgaccgtgaagtggaaatacgaatcaagcaaattgagtcagacaggcagaacctcctcaaggaggtggataacctctacaacatcgagatcctgcggctccccaaggctctgcgcgagatgaactggcttgactacttcgGAGGAATCTTCGAGTATGCGGACGGCCCCAACGCCCAGGTCATGAATGCCGAGGAGCATGCCTTTCGATTTTCTGCCAACATCATCAACAGGAACAGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGGCGACCAAAAAGGCCTGTGACCAGCTGGCACTGGGCGTGGTGGCGATCTTCGGCCCATCACAGGGCTCCTGCACCAATGCCGTCCAGTCCATCTGCAATGCCCTGGAGGTGCCCCACATCCAGCTGCGTTGGAAGCACCACCCGCTGGACAACAAGGACACCTTCTACGTGAACCTCTACCCCGACTACGCCTCGCTCAGCCATGCCATCCTCGACCTGGTCCAGTACCTCAAGTGGCGGTCAGCCACCGTGGTCTATGACGACAGTACAGGGCTCATCCGACTGCAGGAGCTCATCATGGCCCCATCAAGATACAACATCCGCCTGAAGATCCGTCAGCTCCCCATCGACTCTGACGACTCGCGCCCCTTGCTCAAGGAGATGAAGCGAGGCCGGGAATTCCGCATTATCTTCGACTGCAGCCACACTATGGCGGCCCAGATCCTCAAGCAGGCCATGGCCATGGGCATGATGACTGAGTACTACCACTTCATCTTCACCACTCTGGATCTCTACGCTTTAGACCTGGAGCCCTACCGCTACTCAGGCGTGAACCTGACAGGATTCCGGATTCTCAATGTGGACAACCCACACGTCTCGGCCATTGTGGAGAAGTGGTCCATGGAGCGGCTGCAGGCAGCTCCCCGGTCCGAGTCTGGCCTGCTGGATGGAGTGATGATGACTGATGCAGCCTTACTGTACGACGCCGTCCATATCGTGTCCGTGTGCTACCAGCGGGCACCACAGATGACCGTGAACTCCCTGCAGTGCCATCGGCACAAGGCCTGGCGCTTTGGCGGCCGCTTCATGAACTTCATCAAGGAGGCTCAATGGGAAGGATTAACTGGACGAATTGTTTTCAACAAAACTAGTGGCTTGCGGACGGATTTTGATCTGGACATCATCAGCCTGAAAGAGGATGGCCTGGAGAAGGTTGGGGTGTGGAGTCCTGCCGACGGGCTCAACATCACTGAGGTTGCCAAAGGCCGAGGCCCTAATGTCACCGACTCTCTGACAAACAGATCACTCATTGTCACCACAGTGCTGGAGGAGCCCTTCGTCATGTTTCGGAAATCAGACAGGACGCTATACGGGAATGACCGGTTCGAGGGCTACTGCATCGACCTGCTAAAGGAGCTGGCCCACATCCTTGGTTTCTCCTATGAGATCCGGCTGGTGGAGGACGGCAAGTACGGGGCACAGGATGACAAGGGCCAGTGGAACGGCATGGTCAAGGAGCTCATCGACCACAAGGCAGATCTGGCCGTGGCCCCCCTGACCATCACCCATGTTCGAGAGAAGGCCATCGACTTCTCCAAGCCCTTCATGACACTTGGTGTGAGCATCCTGTATCGAAAGCCCAATGGCACCAACCCCAGCGTCTTCTCCTTCCTCAATCCCCTGTCCCCAGACATCTGGATGTATGTTCTCCTCGCCTACCTGGGGGTCAGCTGTGTCCTCTTCGTCATCGCCAGGTTCAGCCCTTATGAGTGGTACGATGCTCACCCCTGCAACCCTGGCTCCGAGGTGGTGGAAAATAACTTCACTCTGCTTAACAGCTTCTGGTTTGGAATGGGATCCCTGATGCAGCAAGGGTCTGAGCTGATGCCCAAAGCCCTGTCCACACGCATCATTGGTGGCATCTGGTGGTTCTTCACGCTCATCATCATCTCTTCCTACACGGCCAACCTGGCTGCCTTTCTGACCGTGGAGCGCATGGAATCACCCATTGACTCTGCTGATGACCTGGCCAAGCAAACCAAAATCGAGTATGGGGCTGTCAAGGATGGGGCCACCATGACCTTCTTCAAGAAATCCAAGATCTCCACCTTCGAGAAGATGTGGGCCTTCATGAGCAGCAAGCCATCGGCGCTGGTGAAGAACAACGAGGAGGGCATCCAGAGGGCCCTGACGGCCGACTACGCGCTGCTCATGGAGTCCACCACCATCGAGTACGTCACGCAGAGGAACTGCAACCTCACCCAGATCGGGGGCCTCATTGACTCCAAGGGCTACGGCATCGGCACGCCCATGGGCTCCCCATACCGGGACAAGATCACCATCGCCATCCTGCAGCTTCAGGAGGAGGACAAGCTGCATATCATGAAGGAGAAGTGGTGGCGGGGCAGCGGGTGTCCTGAGGAGGAAAACAAAGAGGCCAGTGCCCTGGGGATCCAGAAGATCGGGGGCATCTTCATTGTCCTGGCCGCCGGGCTGGTCCTCTCTGTGCTGGTGGCCGTGGGCGAGTTTGTGTACAAGCTCCGCAAAACAGCAGAGAGAGAGCAGCGTTCCTTCTGCAGCACCGTGGCCGATGAGATCCGTTTCTCCCTTACCTGCCAGCGTCGAGTCAAGCACAAGCCTCAGCCTCCCATGATGGTCAAGACTGACGCCGTCATCAACATGCACACATTCAATGACCGCCGGCTTCCCGGCAAGGACAGCATGGCCTGCAGCACATCCTTAGCCCCTGTGTTCCCCTAG MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYFGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDSTGLIRLQELIMAPSRYNIRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMTEYYHFIFTTLDLYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPRSESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEAQWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTNRSLIVTTVLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKPNGTNPSVFSFLNPLSPDIWMYVLLAYLGVSCVLFVIARFSPYEWYDAHPCNPGSEVVENNFTLLNSFWFGMGSLMQQGSELMPKALSTRIIGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFMSSKPSALVKNNEEGIQRALTADYALLMESTTIEYVTQRNCNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSGCPEEENKEASALGIQKIGGIFIVLAAGLVLSVLVAVGEFVYKLRKTAEREQRSFCSTVADEIRFSLTCQRRVKHKPQPPMMVKTDAVINMHTFNDRRLPGKDSMACSTSLAPVFP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31147 CDCA8::GRIK3 ENSG00000134690.11::ENSG00000163873.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1401 TRUE 2514 TRUE 974 CDCA8 ENSG00000134690.11 protein_coding + + chr1:37692481-37709719:+ chr1:37695950:+ chr1:38158153-38175391:+ chr1:38161622:+ GRIK3 ENSG00000163873.10 protein_coding - - chr1:36795527-37034515:- chr1:36891096:- chr1:37261128-37500116:- chr1:37356697:- chr1:37697327,chr1:37697328 chr1:36904721,chr1:36904720 NA NA chr1:38162999,chr1:38163000 chr1:37370322,chr1:37370321 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Nbl1_Borealin_N|20-75|1.5e-24^Borealin|34-47|1.1^Borealin|118-120|0.61^Borealin-PARTIAL|163-264~|2.1e-39^Axin_b-cat_bind|194-207|4.7e-05^F-box-PARTIAL|242-264~|2.4e-05^Nbl1_Borealin_N-PARTIAL|251-264~|0.0073 ANF_receptor-PARTIAL|~116-399|1e-74^Peripla_BP_6-PARTIAL|~116-313|4.3e-07^Lig_chan-Glu_bd|368-382|0.66^Lig_chan-Glu_bd|435-547|1.5e-49^SBP_bac_3|459-549|8.3e-14^Lig_chan|563-832|2.8e-54^SBP_bac_3|720-800|1.1e-06 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.66Mb] 46 86 46 32.08 ONLY_REF_SPLICE YES_LDAS 1.078 GT 1.5219 AG 1.9329 ENST00000327331.2 1-264 ENST00000373091.8 116-2760 chr1|+|[0]37692691-37692784[0]|[1]37692905-37693033[0]|[1]37695910-37695950[2]<==>chr1|-|[2]36801851-36802045[0]|[2]36804987-36805237[1]|[0]36806104-36806326[0]|[2]36817060-36817277[1]|[0]36819736-36819854[2]|[1]36825603-36825826[0]|[2]36841736-36841939[0]|[2]36850311-36850424[0]|[2]36853615-36853722[0]|[2]36859108-36859251[0]|[2]36859844-36860017[0]|[2]36869748-36869801[0]|[2]36872188-36872369[1]|[0]36880634-36880891[1]|[0]36890920-36891096[1] atggctcctaggaagggcagtagtcgggtggccaagaccaactccttacggaggcggaagctcgcctcctttctgaaagacttcgaccgtgaagtggaaatacgaatcaagcaaattgagtcagacaggcagaacctcctcaaggaggtggataacctctacaacatcgagatcctgcggctccccaaggctctgcgcgagatgaactggcttgactacttcgcccttggaggaaacaaacaggccctggaagaggcggcaacaGAGGAATCTTCGAGTATGCGGACGGCCCCAACGCCCAGGTCATGAATGCCGAGGAGCATGCCTTTCGATTTTCTGCCAACATCATCAACAGGAACAGGACTCTGCTGCCCAACACAACCTTGACCTATGACATACAGAGGATTCACTTCCATGACAGCTTCGAGGCGACCAAAAAGGCCTGTGACCAGCTGGCACTGGGCGTGGTGGCGATCTTCGGCCCATCACAGGGCTCCTGCACCAATGCCGTCCAGTCCATCTGCAATGCCCTGGAGGTGCCCCACATCCAGCTGCGTTGGAAGCACCACCCGCTGGACAACAAGGACACCTTCTACGTGAACCTCTACCCCGACTACGCCTCGCTCAGCCATGCCATCCTCGACCTGGTCCAGTACCTCAAGTGGCGGTCAGCCACCGTGGTCTATGACGACAGTACAGGGCTCATCCGACTGCAGGAGCTCATCATGGCCCCATCAAGATACAACATCCGCCTGAAGATCCGTCAGCTCCCCATCGACTCTGACGACTCGCGCCCCTTGCTCAAGGAGATGAAGCGAGGCCGGGAATTCCGCATTATCTTCGACTGCAGCCACACTATGGCGGCCCAGATCCTCAAGCAGGCCATGGCCATGGGCATGATGACTGAGTACTACCACTTCATCTTCACCACTCTGGATCTCTACGCTTTAGACCTGGAGCCCTACCGCTACTCAGGCGTGAACCTGACAGGATTCCGGATTCTCAATGTGGACAACCCACACGTCTCGGCCATTGTGGAGAAGTGGTCCATGGAGCGGCTGCAGGCAGCTCCCCGGTCCGAGTCTGGCCTGCTGGATGGAGTGATGATGACTGATGCAGCCTTACTGTACGACGCCGTCCATATCGTGTCCGTGTGCTACCAGCGGGCACCACAGATGACCGTGAACTCCCTGCAGTGCCATCGGCACAAGGCCTGGCGCTTTGGCGGCCGCTTCATGAACTTCATCAAGGAGGCTCAATGGGAAGGATTAACTGGACGAATTGTTTTCAACAAAACTAGTGGCTTGCGGACGGATTTTGATCTGGACATCATCAGCCTGAAAGAGGATGGCCTGGAGAAGGTTGGGGTGTGGAGTCCTGCCGACGGGCTCAACATCACTGAGGTTGCCAAAGGCCGAGGCCCTAATGTCACCGACTCTCTGACAAACAGATCACTCATTGTCACCACAGTGCTGGAGGAGCCCTTCGTCATGTTTCGGAAATCAGACAGGACGCTATACGGGAATGACCGGTTCGAGGGCTACTGCATCGACCTGCTAAAGGAGCTGGCCCACATCCTTGGTTTCTCCTATGAGATCCGGCTGGTGGAGGACGGCAAGTACGGGGCACAGGATGACAAGGGCCAGTGGAACGGCATGGTCAAGGAGCTCATCGACCACAAGGCAGATCTGGCCGTGGCCCCCCTGACCATCACCCATGTTCGAGAGAAGGCCATCGACTTCTCCAAGCCCTTCATGACACTTGGTGTGAGCATCCTGTATCGAAAGCCCAATGGCACCAACCCCAGCGTCTTCTCCTTCCTCAATCCCCTGTCCCCAGACATCTGGATGTATGTTCTCCTCGCCTACCTGGGGGTCAGCTGTGTCCTCTTCGTCATCGCCAGGTTCAGCCCTTATGAGTGGTACGATGCTCACCCCTGCAACCCTGGCTCCGAGGTGGTGGAAAATAACTTCACTCTGCTTAACAGCTTCTGGTTTGGAATGGGATCCCTGATGCAGCAAGGGTCTGAGCTGATGCCCAAAGCCCTGTCCACACGCATCATTGGTGGCATCTGGTGGTTCTTCACGCTCATCATCATCTCTTCCTACACGGCCAACCTGGCTGCCTTTCTGACCGTGGAGCGCATGGAATCACCCATTGACTCTGCTGATGACCTGGCCAAGCAAACCAAAATCGAGTATGGGGCTGTCAAGGATGGGGCCACCATGACCTTCTTCAAGAAATCCAAGATCTCCACCTTCGAGAAGATGTGGGCCTTCATGAGCAGCAAGCCATCGGCGCTGGTGAAGAACAACGAGGAGGGCATCCAGAGGGCCCTGACGGCCGACTACGCGCTGCTCATGGAGTCCACCACCATCGAGTACGTCACGCAGAGGAACTGCAACCTCACCCAGATCGGGGGCCTCATTGACTCCAAGGGCTACGGCATCGGCACGCCCATGGGCTCCCCATACCGGGACAAGATCACCATCGCCATCCTGCAGCTTCAGGAGGAGGACAAGCTGCATATCATGAAGGAGAAGTGGTGGCGGGGCAGCGGGTGTCCTGAGGAGGAAAACAAAGAGGCCAGTGCCCTGGGGATCCAGAAGATCGGGGGCATCTTCATTGTCCTGGCCGCCGGGCTGGTCCTCTCTGTGCTGGTGGCCGTGGGCGAGTTTGTGTACAAGCTCCGCAAAACAGCAGAGAGAGAGCAGCGTTCCTTCTGCAGCACCGTGGCCGATGAGATCCGTTTCTCCCTTACCTGCCAGCGTCGAGTCAAGCACAAGCCTCAGCCTCCCATGATGGTCAAGACTGACGCCGTCATCAACATGCACACATTCAATGACCGCCGGCTTCCCGGCAAGGACAGCATGGCCTGCAGCACATCCTTAGCCCCTGTGTTCCCCTAG MAPRKGSSRVAKTNSLRRRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNLYNIEILRLPKALREMNWLDYFALGGNKQALEEAATEESSSMRTAPTPRS*MPRSMPFDFLPTSSTGTGLCCPTQP*PMTYRGFTSMTASRRPKRPVTSWHWAWWRSSAHHRAPAPMPSSPSAMPWRCPTSSCVGSTTRWTTRTPST*TSTPTTPRSAMPSSTWSSTSSGGQPPWSMTTVQGSSDCRSSSWPHQDTTSA*RSVSSPSTLTTRAPCSRR*SEAGNSALSSTAATLWRPRSSSRPWPWA**LSTTTSSSPLWISTL*TWSPTATQA*T*QDSGFSMWTTHTSRPLWRSGPWSGCRQLPGPSLACWME***LMQPYCTTPSISCPCATSGHHR*P*TPCSAIGTRPGALAAAS*TSSRRLNGKD*LDELFSTKLVACGRILIWTSSA*KRMAWRRLGCGVLPTGSTSLRLPKAEALMSPTL*QTDHSLSPQCWRSPSSCFGNQTGRYTGMTGSRATASTC*RSWPTSLVSPMRSGWWRTASTGHRMTRASGTAWSRSSSTTRQIWPWPP*PSPMFERRPSTSPSPS*HLV*ASCIESPMAPTPASSPSSIPCPQTSGCMFSSPTWGSAVSSSSSPGSALMSGTMLTPATLAPRWWKITSLCLTASGLEWDP*CSKGLS*CPKPCPHASLVASGGSSRSSSSLPTRPTWLPF*PWSAWNHPLTLLMTWPSKPKSSMGLSRMGPP*PSSRNPRSPPSRRCGPS*AASHRRW*RTTRRASRGP*RPTTRCSWSPPPSSTSRRGTATSPRSGASLTPRATASARPWAPHTGTRSPSPSCSFRRRTSCIS*RRSGGGAAGVLRRKTKRPVPWGSRRSGASSLSWPPGWSSLCWWPWASLCTSSAKQQRESSVPSAAPWPMRSVSPLPASVESSTSLSLP*WSRLTPSSTCTHSMTAGFPARTAWPAAHP*PLCSP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31148 PVT1::MTF1 ENSG00000249859.14::ENSG00000188786.10 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1402 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ MTF1 ENSG00000188786.10 protein_coding - - chr1:37809574-37859592:- chr1:37817482:- chr1:38275246-38325264:- chr1:38283154:- chr8:127891130,chr8:127891130,chr8:127891121,chr8:127891118 chr1:37818792,chr1:37818787,chr1:37818794,chr1:37818794 NA NA chr8:128903376,chr8:128903376,chr8:128903367,chr8:128903364 chr1:38284464,chr1:38284459,chr1:38284466,chr1:38284466 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr1] 22 23 22 15.42 ONLY_REF_SPLICE YES_LDAS 0.5166 GT 1.8892 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31150 SMIM12::DLGAP3 ENSG00000163866.9::ENSG00000116544.12 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1405 FALSE NA FALSE NA SMIM12 ENSG00000163866.9 protein_coding - - chr1:34712737-34859755:- chr1:34855771:- chr1:35178338-35325356:- chr1:35321372:- DLGAP3 ENSG00000116544.12 protein_coding - - chr1:34865436-34929650:- chr1:34886285:- chr1:35331037-35395251:- chr1:35351886:- chr1:34747116,chr1:34747119 chr1:34893438,chr1:34893438 NA NA chr1:35212717,chr1:35212720 chr1:35359039,chr1:35359039 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UPF0767|1-87|1.4e-40 none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.01Mb];LOCAL_REARRANGEMENT:-:[5620] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1657 GT 1.8256 AG 1.9656 ENST00000521580.3 1-207 ENST00000235180.4 1387-2940 chr1|-|[2]34855771-34855977[0]<==>chr1|-|[2]34866083-34866301[0]|[2]34867048-34867191[0]|[2]34867536-34867627[1]|[0]34868605-34869089[2]|[1]34884978-34885063[0]|[2]34885478-34885791[1]|[0]34886072-34886285[0] atgtggcctgtgttttggaccgtggttcgtacctatgctccttatgtcacattccctgttgccttcgtggtcggggctgtgggttaccacctggaatggttcatcaggggaaaggacccccagcccgtggaggaggaaaagagcatctcagagcgccgggaggatcgcaagctggatgagcttctaggcaaggaccacacgcaggtgCTCAGCGATGAGTTGAACCAGCAGCTGGAGGCCGTGTGCGGGTCGGTGTTTGGGGAGCTGGAGTCCCAGGCCGTGGACGCCCTGGACCTGCCCGGCTGTTTCCGCATGCGGAGCCACAGCTACCTCCGGGCCATCCAGGCCGGCTGCTCTCAAGACGACGACTGCCTGCCCCTCCTCGCTACCCCTGCCGCTGTCTCAGGGAGGCCCGGCTCCTCCTTCAACTTCAGAAAGGCCCCGCCCCCCATCCCGCCGGGAAGCCAGGCCCCGCCCCGCATCTCCATCACCGCCCAGAGCAGCACCGACTCCGCGCACGAGAGCTTCACGGCGGCCGAGGGCCCCGCCCGGCGCTGCAGCTCCGCCGACGGGCTGGACGGCCCCGCCATGGGTGCGCGCACACTGGAGTTGGCGCCGGTGCCGCCCCGGGCCAGCCCCAAGCCCCCCACACTCATCATCAAGACCATCCCTGGCAGGGAGGAGCTGCGGAGCCTGGCGCGGCAGCGGAAGTGGCGGCCGTCCATTGGGGTGCAGGTGGAGACGATCTCAGATTCGGACACCGAGAACAGGAGCCGGAGGGAGTTCCACTCTATTGGCGTGCAGGTGGAAGAGGACAAGAGGCGAGCAAGGTTCAAGCGCTCCAATAGTGTGACGGCTGGCGTGCAGGCAGACCTGGAGCTGGAGGGCCTGGCAGGCCTGGCCACGGTGGCCACAGAAGACAAGGCCCTGCAGTTTGGACGCTCCTTCCAGAGGCACGCCTCTGAGCCCCAGCCTGGGCCCCGGGCCCCCACCTACTCAGTCTTCCGCACGGTCCACACGCAGGGCCAGTGGGCCTACCGCGAGGGCTACCCACTGCCGTACGAGCCGCCGGCCACCGATGGGTCGCCCGGCCCTGCCCCCGCCCCCACCCCCGGCCCTGGGGCCGGCCGCCGTGACTCCTGGATAGAGCGCGGTTCACGTAGCCTCCCCGACTCAGGCCGCGCATCCCCCTGCCCACGCGACGGCGAGTGGTTCATCAAGATGCTGCGGGCAGAGGTGGAGAAGCTGGAGCACTGGTGCCAGCAGATGGAGCGTGAGGCGGAGGACTATGAGCTACCCGAGGAGATCCTGGAGAAGATCCGCAGTGCTGTGGGCAGCACACAACTTCTCCTGTCCCAGAAGGTTCAGCAGTTCTTCCGGCTGTGTCAGCAAAGCATGGATCCCACTGCGTTCCCTGTGCCCACCTTCCAGGACCTGGCGGGTTTCTGGGACCTCCTACAGCTCTCCATCGAGGATGTGACCCTCAAGTTCCTGGAGCTACAGCAACTCAAGGCCAACAGCTGGAAACTCCTGGAGCCTAAGGAGGAGAAGAAGGTCCCTCCGCCGATACCAAAGAAGCCCCTGCGGGGCCGGGGCGTGCCGGTGAAGGAGCGCTCCCTGGACTCCGTGGACCGGCAGCGGCAGGAAGCGCGCAAGCGGCTCCTGGCGGCCAAGCGCGCCGCTTCCTTCCGCCACAGCTCGGCCACCGAGAGCGCCGACAGCATCGAGATCTACATCCCCGAGGCCCAGACCAGGCTGTGA MWPVFWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKLDELLGKDHTQVLSDELNQQLEAVCGSVFGELESQAVDALDLPGCFRMRSHSYLRAIQAGCSQDDDCLPLLATPAAVSGRPGSSFNFRKAPPPIPPGSQAPPRISITAQSSTDSAHESFTAAEGPARRCSSADGLDGPAMGARTLELAPVPPRASPKPPTLIIKTIPGREELRSLARQRKWRPSIGVQVETISDSDTENRSRREFHSIGVQVEEDKRRARFKRSNSVTAGVQADLELEGLAGLATVATEDKALQFGRSFQRHASEPQPGPRAPTYSVFRTVHTQGQWAYREGYPLPYEPPATDGSPGPAPAPTPGPGAGRRDSWIERGSRSLPDSGRASPCPRDGEWFIKMLRAEVEKLEHWCQQMEREAEDYELPEEILEKIRSAVGSTQLLLSQKVQQFFRLCQQSMDPTAFPVPTFQDLAGFWDLLQLSIEDVTLKFLELQQLKANSWKLLEPKEEKKVPPPIPKKPLRGRGVPVKERSLDSVDRQRQEARKRLLAAKRAASFRHSSATESADSIEIYIPEAQTRL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31157 CHML::CHRM3-AS2 ENSG00000203668.3::ENSG00000233355.7 NCIH2122 SRR8615813 SRR8652058 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CHML ENSG00000203668.3 protein_coding - - chr1:241628851-241640369:- chr1:241639882:- chr1:241792153-241803671:- chr1:241803184:- CHRM3-AS2 ENSG00000233355.7 lncRNA - - chr1:239703381-239770130:- chr1:239714264:- chr1:239866681-239933430:- chr1:239877564:- chr1:241636328 chr1:239716821 NA NA chr1:241799630 chr1:239880121 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.90Mb] 3 5 3 5 ONLY_REF_SPLICE YES_LDAS 0.1104 GT 1.7819 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31159 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1406 FALSE NA FALSE NA ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151615443:+ chr6:151815152-151942328:+ chr6:151936578:+ chr6:151711450,chr6:151711450 chr6:151604362,chr6:151604359 NA NA chr6:152032585,chr6:152032585 chr6:151925497,chr6:151925494 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ESR1:ArcherDX_panel","ESR1:Oncogene","ESR1:FoundationOne_panel"];["HaasMedCancer","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_REARRANGEMENT:+:[35498] 135 61 135 61 ONLY_REF_SPLICE YES_LDAS 1.5959 GT 1.9656 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 31169 ZYG11A::ENSG00000203605 ENSG00000203995.11::ENSG00000203605.3 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZYG11A ENSG00000203995.11 protein_coding + + chr1:52842511-52894998:+ chr1:52867777:+ chr1:53308183-53360670:+ chr1:53333449:+ ENSG00000203605 ENSG00000203605.3 lncRNA + + chr1:63139250-63163153:+ chr1:63162747:+ chr1:63604921-63628824:+ chr1:63628418:+ chr1:52871891,chr1:52871892 chr1:63161930,chr1:63161928 NA NA chr1:53337563,chr1:53337564 chr1:63627601,chr1:63627599 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 34 13 34 12.09 ONLY_REF_SPLICE YES_LDAS 0.3752 GT 1.9329 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31170 VPS13D::IFFO2 ENSG00000048707.15::ENSG00000169991.11 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1414 FALSE NA FALSE NA VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12258103:+ chr1:12290087-12572099:+ chr1:12318160:+ IFFO2 ENSG00000169991.11 protein_coding - - chr1:18904280-18956676:- chr1:18912083:- chr1:19230774-19283170:- chr1:19238577:- chr1:12259953,chr1:12259953 chr1:18912310,chr1:18912359 NA NA chr1:12320010,chr1:12320010 chr1:19238804,chr1:19238853 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Chorein_N|2-115|1.3e-35^VPS13_ext_chorein|137-356|1.3e-60^VPS13_mid_rpt|229-291|0.0035^VPS13_mid_rpt|613-769|6e-19^VPS13_mid_rpt|805-894|3e-15^VPS13_mid_rpt-PARTIAL|1101-1110~|0.021 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:6.39Mb] 28 7 28 7 ONLY_REF_SPLICE YES_LDAS 0.285 GT 1.8892 AG 1.9219 ENST00000620676.6 1-1110 ENST00000416166.1 329-779 chr1|+|[0]12234267-12234363[0]|[1]12242513-12242590[0]|[1]12244246-12244436[2]|[0]12244537-12244617[2]|[0]12249223-12249339[2]|[0]12253722-12253826[2]|[0]12256333-12256503[2]|[0]12256987-12257087[1]|[2]12257935-12258103[2]<==>chr1|-|[2]18908561-18908666[2]|[1]18910342-18910472[0]|[2]18911384-18911476[0]|[2]18911963-18912083[2] atgttggaaggccttgtagcctgggttctcaatacctatttgggaaaatatgtcaataacctgaacactgaccagctctcagttgcacttctcaaaggtgctgttgaattagaaaacttgccattaaagaaagatgccttgaaagaattggaattaccatttgaagtcaaagctggcttcattgggaaagtaacccttcagattcccttttatcgcccccatgtggacccttgggtgatctccatctccagccttcacttaattggagccccagagaaaatacaggatttcaatgatgaaaaggagaagctgttggaaagggaacgtaagaaagcactacttcaagccctggaggagaaatggaagaatgaccgccagcagaaaggggagtcctattggtattcagttaccgcctccgtagttacaaggattgtggagaatattgaattaaaaattcaagatgtccatttacgctttgaagatggtgtcaccaatccctcccatccttttgcttttggcatctgcattaagaatgtgtccatgcaaaatgctgtgaatgagcctgtacagaaactaatgcggaaaaagcaattagacgtagcagaatttagcatctattgggatgtcgattgcactttactgggggatttgcctcagatggagttacaggaggccatggccaggagcatggagagtcgcagccatcactacgtcctggagcctgtgtttgcatctgctcttttgaagagaaactgctccaagaagcccctgcggtctcggcacagtccccgtattgattgtgatattcagctggagaccattcccttgaaactctctcagctgcaataccggcaaatcatggaattcctcaaggagctggaacgaaaggagaggcaggtgaagttccgaaggtggaaacccaaggtggcgatatctaagaactgccgagaatggtggtattttgctttgaatgctaacttgtatgagatcagagagcagaggaaacgttgcacctgggactttatgttgcaccgcgctcgtgatgctgtatcttacactgacaaatatttcaacaagttaaaaggaggcctgctgtccacagatgacaagGCGGGAGACCTTTGACTTTGACGACGACTGTGACAGCCTGACGTGGGAAGAGAATGAAGACACGCTGCTGCTCTGGGAGGATTTCACCAACTGCAATCCGACCATCGACCTGCAGGGCGAGCAAGAGGAAAACTTGGGCAACTTGATCCATGAGACCGAATCCTTCTTCAAGACGAGAGACAAGGAGTACCAGGAAACGATAGGTCAGATCGAGCTCGAGCTGGCCACAGCCAAAAGTGACATGAACCGACACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGAGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCAAAGGCTCCGCAGACAGGAATTCACCGTCCCCCAGCTCCGTGGCCAGCAGCGACTCAGGAAGTACAGATGAGATCCAGGATGAGTTCGAGCGCGAGGCGGATGTGGAGCCCATGGTCAGCTGA MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGFIGKVTLQIPFYRPHVDPWVISISSLHLIGAPEKIQDFNDEKEKLLERERKKALLQALEEKWKNDRQQKGESYWYSVTASVVTRIVENIELKIQDVHLRFEDGVTNPSHPFAFGICIKNVSMQNAVNEPVQKLMRKKQLDVAEFSIYWDVDCTLLGDLPQMELQEAMARSMESRSHHYVLEPVFASALLKRNCSKKPLRSRHSPRIDCDIQLETIPLKLSQLQYRQIMEFLKELERKERQVKFRRWKPKVAISKNCREWWYFALNANLYEIREQRKRCTWDFMLHRARDAVSYTDKYFNKLKGGLLSTDDKAGDL*L*RRL*QPDVGRE*RHAAALGGFHQLQSDHRPAGRARGKLGQLDP*DRILLQDERQGVPGNDRSDRARAGHSQK*HEPTPARVHGDVQHEARPGRADGDLPPAHQRLRRQEFTVPQLRGQQRLRKYR*DPG*VRARGGCGAHGQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31171 CDK5RAP2::MEGF9 ENSG00000136861.19::ENSG00000106780.9 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1417 FALSE NA FALSE NA CDK5RAP2 ENSG00000136861.19 protein_coding - - chr9:120388875-120580170:- chr9:120545714:- chr9:123151153-123342448:- chr9:123307992:- MEGF9 ENSG00000106780.9 protein_coding - - chr9:120600811-120714470:- chr9:120622755:- chr9:123363089-123476748:- chr9:123385033:- chr9:120542483 chr9:120652775 NA NA chr9:123304761 chr9:123415053 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Cnn_1N|60-132|6e-26^Cnn_1N|289-342|1 none ["Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.02Mb];LOCAL_REARRANGEMENT:-:[20643] 27 6 27 6 ONLY_REF_SPLICE YES_LDAS 0.2687 GT 1.8892 AG 1.9899 ENST00000687279.1 1-383 ENST00000373930.4 804-1809 chr9|-|[1]120545714-120545790[0]|[2]120550792-120550902[0]|[2]120568321-120568388[1]|[0]120571974-120572041[2]|[1]120579920-120579978[0]<==>chr9|-|[2]120605190-120605641[1]|[0]120607741-120608010[1]|[0]120612396-120612539[1]|[0]120622616-120622755[2] atgatggacttggtgttggaagaggacgtcaccgtccctgggacgctcagcggctgcagtggccttgttcccagtgtaccagatgacctggatggcatcaaccccaatgctgggttgggaaatggtctgctcccaaatgtgtcagaagaaacagtgtctcccaccagagcacggaacatgaaggactttgaaaatcaaatcactgaattgaagaaagaaaactttaacctaaagctccgcatctatttccttgaggaaagaatgcaacaggaatttcatggccccactgaacatatctacaaaactaacattgagctcaaggtggaagtagaaagtctgaagcgggaactccaggagagagagcagctgctcatcaaagcctcTTCTGGGAAATGCCAGTGCAAAGTGGGTGTCATTGGCTCTATATGTGACCGATGCCAAGATGGATATTATGGCTTTAGTAAGAATGGCTGCTTGCCCTGCCAATGCAATAATCGGTCTGCCAGTTGCGATGCCCTCACAGGTGCTTGTTTAAACTGCCAGGAAAATAGCAAAGGAAATCACTGTGAAGAATGTAAAGAAGGATTTTATCAGAGTCCTGATGCCACTAAAGAATGTCTTCGCTGCCCTTGTTCAGCAGTGACATCTACAGGCAGCTGCTCTATAAAATCGAGTGAATTGGAACCTGAATGTGACCAGTGTAAAGATGGTTACATAGGCCCGAACTGCAATAAATGTGAAAATGGCTATTACAATTTTGACAGCATCTGTAGAAAGTGCCAATGTCACGGCCATGTGGACCCAGTTAAAACTCCAAAGATTTGTAAGCCCGAGAGTGGTGAGTGCATCAACTGCCTCCATAACACCACTGGGTTTTGGTGTGAGAACTGCCTAGAAGGTTATGTTCACGACCTCGAGGGAAATTGCATCAAGAAAGAAGTTATTCTTCCAACACCTGAAGGTTCTACCATTTTGGTTTCCAATGCCTCTTTGACCACATCAGTGCCCACCCCTGTTATAAATAGTACTTTTACCCCTACAACCCTGCAGACTATCTTTTCAGTAAGCACTTCTGAAAACAGCACTTCAGCTTTAGCTGATGTATCATGGACCCAATTTAACATCATCATTTTGACAGTCATCATCATTGTTGTGGTGCTGCTAATGGGATTTGTGGGGGCTGTATATATGTACCGCGAGTACCAAAACCGGAAACTCAATGCCCCCTTTTGGACCATCGAGCTGAAAGAAGACAATATCAGTTTCAGCAGCTACCATGACAGCATTCCCAATGCAGATGTTTCGGGATTGTTGGAAGATGATGGCAATGAAGTGGCTCCCAATGGGCAGCTGACCCTGACGACGCCCATACATAACTACAAAGCCTAA MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNMKDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQEREQLLIKASSGKCQCKVGVIGSICDRCQDGYYGFSKNGCLPCQCNNRSASCDALTGACLNCQENSKGNHCEECKEGFYQSPDATKECLRCPCSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQCHGHVDPVKTPKICKPESGECINCLHNTTGFWCENCLEGYVHDLEGNCIKKEVILPTPEGSTILVSNASLTTSVPTPVINSTFTPTTLQTIFSVSTSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPIHNYKA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match TRUE Brain Lower Grade Glioma CENTRAL_NERVOUS_SYSTEM no_match 123330599 FALSE 123367919 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31173 SIRT3::CD151 ENSG00000142082.15::ENSG00000177697.19 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SIRT3 ENSG00000142082.15 protein_coding - - chr11:215030-236931:- chr11:224078:- chr11:215030-236931:- chr11:224078:- CD151 ENSG00000177697.19 protein_coding + + chr11:832887-839831:+ chr11:834530:+ chr11:832887-839831:+ chr11:834530:+ chr11:219501,chr11:219506 chr11:834479,chr11:834474 NA NA chr11:219501,chr11:219506 chr11:834479,chr11:834474 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CD151:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.60Mb] 25 9 25 9 ONLY_REF_SPLICE YES_LDAS 0.2769 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31175 C1orf159::OPRD1 ENSG00000131591.18::ENSG00000116329.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA C1orf159 ENSG00000131591.18 protein_coding - - chr1:1081818-1116361:- chr1:1090353:- chr1:1017198-1051741:- chr1:1025733:- OPRD1 ENSG00000116329.12 protein_coding + + chr1:28812170-28871267:+ chr1:28858954:+ chr1:29138682-29197779:+ chr1:29185466:+ chr1:1089678 chr1:28812555 NA NA chr1:1025058 chr1:29139067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none 7tm_1-PARTIAL|~228-318|1.9e-76^7TM_GPCR_Srsx-PARTIAL|~228-330|7.1e-13^7TM_GPCR_Srv-PARTIAL|~228-330|4.2e-11^7TM_GPCR_Srx-PARTIAL|~228-262|2.2e-10^7tm_4-PARTIAL|~228-329|5.6e-07 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:27.70Mb] 18 8 18 8 ONLY_REF_SPLICE YES_LDAS 0.2117 GT 1.7819 AG 1.8295 ENST00000467751.5 1-245 ENST00000234961.7 228-1119 chr1|-|[1]1090353-1090428[1]|[0]1091278-1091374[0]|[2]1091472-1091543[0]<==>chr1|+|[2]28858954-28859303[0]|[1]28862742-28863283[2] atggcgctgcggcacctcgccctcctggctggccttctcgtgggagtcgccagcaagtccatggagaacacggacactgatgtcccagccccagaggtgctgaccaggtccactgctggggtcagaggggcctgtgcctcgcagaggggagccctccgctgcctgctgggcccagctgcccgagtgctgtgtggatgtggtgggcgtcaacgccagctgcccaggcgcaagtctgtgtggtccagGTACACTAAGATGAAGACGGCCACCAACATCTACATCTTCAACCTGGCCTTAGCCGATGCGCTGGCCACCAGCACGCTGCCTTTCCAGAGTGCCAAGTACCTGATGGAGACGTGGCCCTTCGGCGAGCTGCTCTGCAAGGCTGTGCTCTCCATCGACTACTACAATATGTTCACCAGCATCTTCACGCTCACCATGATGAGTGTTGACCGCTACATCGCTGTCTGCCACCCTGTCAAGGCCCTGGACTTCCGCACGCCTGCCAAGGCCAAGCTGATCAACATCTGTATCTGGGTCCTGGCCTCAGGCGTTGGCGTGCCCATCATGGTCATGGCTGTGACCCGTCCCCGGGACGGGGCAGTGGTGTGCATGCTCCAGTTCCCCAGCCCCAGCTGGTACTGGGACACGGTGACCAAGATCTGCGTGTTCCTCTTCGCCTTCGTGGTGCCCATCCTCATCATCACCGTGTGCTATGGCCTCATGCTGCTGCGCCTGCGCAGTGTGCGCCTGCTGTCGGGCTCCAAGGAGAAGGACCGCAGCCTGCGGCGCATCACGCGCATGGTGCTGGTGGTTGTGGGCGCCTTCGTGGTGTGTTGGGCGCCCATCCACATCTTCGTCATCGTCTGGACGCTGGTGGACATCGACCGGCGCGACCCGCTGGTGGTGGCTGCGCTGCACCTGTGCATCGCGCTGGGCTACGCCAATAGCAGCCTCAACCCCGTGCTCTACGCTTTCCTCGACGAGAACTTCAAGCGCTGCTTCCGCCAGCTCTGCCGCAAGCCCTGCGGCCGCCCAGACCCCAGCAGCTTCAGCCGCGCCCGCGAAGCCACGGCCCGCGAGCGTGTCACCGCCTGCACCCCGTCCGATGGTCCCGGCGGTGGCGCTGCCGCCTGA MALRHLALLAGLLVGVASKSMENTDTDVPAPEVLTRSTAGVRGACASQRGALRCLLGPAARVLCGCGGRQRQLPRRKSVWSRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLCRKPCGRPDPSSFSRAREATARERVTACTPSDGPGGGAAA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31176 NCS1::GPR107 ENSG00000107130.10::ENSG00000148358.21 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1422 FALSE NA FALSE NA NCS1 ENSG00000107130.10 protein_coding + + chr9:130172404-130237303:+ chr9:130172727:+ chr9:132934683-132999582:+ chr9:132935006:+ GPR107 ENSG00000148358.21 protein_coding + + chr9:130053426-130140169:+ chr9:130075636:+ chr9:132815705-132902448:+ chr9:132837915:+ chr9:130174258,chr9:130174258 chr9:130060201,chr9:130059877 NA NA chr9:132936537,chr9:132936537 chr9:132822480,chr9:132822156 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Homeodomain|4-32|0.00021^EF-hand_6|21-32|3.8^EF-hand_7|22-52|0.19^EF-hand_9|23-51|0.4^EF-hand_7-PARTIAL|40-64~|4.8e-09^EF-hand_6|40-53|1.5^EF-hand_8-PARTIAL|40-64~|8.5e-08 Lung_7-TM_R|216-435|1.9e-69^GpcrRhopsn4|238-390|7.6e-10^Lung_7-TM_R|485-553|1.8e-18^GpcrRhopsn4|497-510|1.2^Sas10_Utp3|555-585|0.81 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_REARRANGEMENT:+:[32409] 15 1 15 1 ONLY_REF_SPLICE YES_LDAS 0.1302 GT 1.9086 AG 1.8062 ENST00000372398.6 1-64 ENST00000372406.5 142-1803 chr9|+|[0]130172664-130172727[0]<==>chr9|+|[0]130075636-130075749[2]|[0]130076412-130076462[2]|[0]130077299-130077378[1]|[2]130079630-130079769[0]|[1]130083565-130083602[2]|[0]130086420-130086476[2]|[0]130090876-130090983[2]|[0]130092248-130092381[1]|[2]130099457-130099532[2]|[0]130100629-130100702[1]|[2]130101106-130101223[2]|[0]130104420-130104550[1]|[2]130107496-130107539[0]|[1]130110370-130110426[0]|[1]130114577-130114663[0]|[1]130124915-130124964[2]|[0]130127483-130127566[2]|[0]130128640-130128761[1]|[2]130135025-130135121[2] atggggaaatccaacagcaagttgaagcccgaagttgtggaggagctgaccaggaagacctactGATGATGTGAGGCATAAAGTTCATCTGAACACCTTTGGCTTCTTCAAGGATGGGTACATGGTGGTGAATGTCAGTAGCCTCTCACTGAATGAGCCTGAAGACAAGGATGTGACTATTGGATTTAGCCTAGACCGTACAAAGAATGATGGCTTTTCTTCTTACCTGGATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAAGTGAGGTAAGAGTAAAGTCTCCACCAGAAGCTGGTACCCAGTTACCAAAGATCATCTTCAGCAGGGATGAGAAAGTCCTTGGTCAGAGCCAGGAGCCTAATGTTAACCCTGCTTCAGCAGGCAACCAGACCCAGAAGACACAAGATGGTGGAAAGTCTAAAAGAAGTACAGTGGATTCAAAGGCCATGGGAGAGAAATCCTTTTCTGTTCATAATAATGGTGGGGCAGTGTCATTTCAGTTTTTCTTTAACATCAGCACTGATGACCAAGAAGGCCTTTACAGTCTTTATTTTCATAAATGCCTTGGAAAAGAATTGCCAAGTGACAAGTTTACATTCAGCCTTGATATTGAGATCACAGAGAAGAATCCTGACAGCTACCTCTCAGCAGGAGAAATTCCTCTCCCCAAATTATACATCTCAATGGCCTTTTTCTTCTTTCTTTCTGGGACCATCTGGATTCATATCCTTCGAAAACGACGGAATGATGTATTTAAAATCCACTGGCTGATGGCGGCCCTTCCTTTCACCAAGTCTCTTTCCTTGGTGTTCCATGCAATTGACTACCACTACATCTCCTCCCAGGGCTTCCCTATCGAAGGCTGGGCTGTTGTGTACTACATAACTCACCTTTTGAAAGGGGCGCTACTCTTCATCACCATTGCACTCATTGGCACTGGCTGGGCTTTCATTAAGCACATCCTTTCTGATAAAGACAAAAAGATCTTCATGATTGTCATTCCACTCCAGGTCCTGGCAAATGTAGCCTACATCATCATAGAGTCCACCGAGGAGGGCACGACTGAATATGGCTTGTGGAAGGACTCTCTATTTCTGGTCGACCTGTTGTGTTGTGGTGCCATCCTCTTCCCAGTGGTGTGGTCAATCAGACATTTACAAGAAGCATCAGCAACAGATGGAAAAGGTGACAGCATGGGACCTCTTCAGCAGAGAGCGAATCTAAGAGCAGGAAGTCGCATAGAGTCTCACCATTTTGCCCAGGCTGATCTTGAACTCCTGGCCTCTAGCTGTCCTCCTGCCTCAGTCTCCCAAAGGGCTGGGATTACAGCTGCTATTAACTTAGCAAAGCTGAAACTTTTCAGACATTATTACGTCTTGATTGTGTGTTACATATACTTCACTAGGATCATTGCATTTCTCCTCAAACTCGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAGCTCCTGGATGAAACGGCCACACTGGTCTTCTTTGTTCTAACGGGGTATAAATTCCGTCCGGCTTCAGATAACCCCTACCTACAACTTTCTCAGGAAGAAGAAGACTTGGAAATGGAGTCCGTTGTGACAACATCTGGGGTGATGGAAAGTATGAAGAAAGTCAAGAAGGTGACCAACGGCTCCGTGGAGCCCCAGGGCGAGTGGGAAGGCGCCGTGTGA MGKSNSKLKPEVVEELTRKTY**CEA*SSSEHLWLLQGWVHGGECQ*PLTE*A*RQGCDYWI*PRPYKE*WLFFLPG*RCELLYFKETVCLCHPFNPRHLQK*GKSKVSTRSWYPVTKDHLQQG*ESPWSEPGA*C*PCFSRQPDPEDTRWWKV*KKYSGFKGHGREILFCS**WWGSVISVFL*HQH**PRRPLQSLFS*MPWKRIAK*QVYIQP*Y*DHREES*QLPLSRRNSSPQIIHLNGLFLLSFWDHLDSYPSKTTE*CI*NPLADGGPSFHQVSFLGVPCN*LPLHLLPGLPYRRLGCCVLHNSPFERGATLHHHCTHWHWLGFH*AHPF**RQKDLHDCHSTPGPGKCSLHHHRVHRGGHD*IWLVEGLSISGRPVVLWCHPLPSGVVNQTFTRSISNRWKR*QHGTSSAESESKSRKSHRVSPFCPG*S*TPGL*LSSCLSLPKGWDYSCY*LSKAETFQTLLRLDCVLHILH*DHCISPQTRCSIPVEVALPAPG*NGHTGLLCSNGV*IPSGFR*PLPTTFSGRRRLGNGVRCDNIWGDGKYEESQEGDQRLRGAPGRVGRRRV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Adrenocortical carcinoma ADRENAL_GLAND no_match 132935006 TRUE 132889762 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31181 PDE8A::SLC28A1 ENSG00000073417.15::ENSG00000156222.12 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE TRUE 1419 FALSE NA FALSE NA PDE8A ENSG00000073417.15 protein_coding + + chr15:84980440-85139145:+ chr15:85076787:+ chr15:85523671-85682376:+ chr15:85620018:+ SLC28A1 ENSG00000156222.12 protein_coding + + chr15:84884654-84945798:+ chr15:84918524:+ chr15:85427885-85489029:+ chr15:85461755:+ chr15:85082936 chr15:84908899 NA NA chr15:85626167 chr15:85452130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PDE8|1-13|4.1e-06^DUF5894|81-111|7.5e-05^Sina_ZnF|87-131|0.00015^PAS|219-324|9e-16^PAS_8|219-263|5.5e-06^PAS_4|221-324|9.6e-09^PAS_9|226-324|9.3e-15^PAS_3|239-322|1.7e-08 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.03Mb];LOCAL_REARRANGEMENT:+:[34644] 14 3 14 3 ONLY_REF_SPLICE YES_LDAS 0.1384 GT 1.9329 AG 1.8323 ENST00000310298.8 1-546 ENST00000286749.3 796-1950 chr15|+|[0]84982163-84982348[2]|[0]85064370-85064426[2]|[0]85067014-85067204[1]|[2]85075862-85075918[1]|[2]85076733-85076787[2]<==>chr15|+|[0]84918524-84918604[2]|[0]84920989-84921069[2]|[0]84923985-84924110[2]|[0]84933145-84933275[1]|[2]84935026-84935194[2]|[0]84935321-84935518[2]|[0]84943445-84943526[0]|[1]84944566-84944664[0]|[1]84944756-84944867[1]|[2]84945125-84945200[2] atgggctgtgccccgagcatccacatttccgagcgcctggtggccgaggacgcgcctagccccgcggcaccgccgctgtcgtccggcgggccgcgcctcccgcagggccagaagacggccgccttgccccggacccgcggcgccggcctcttggagtcggagcttcgcgacggcagcggcaagaaggtagcagtagctgatgtgcagtttggccccatgagatttcatcaagatcaacttcaggtacttttagtgtttaccaaagaagataaccaatgtaatggattctgcagggcatgtgaaaaagcagggtttaagtgtacagttaccaaggaggctcaggctgtccttgcctgtttcctggacaaacatcatgacattatcatcatagaccacagaaatcctcgacagctggatgcagaggcactgtgcaggtctatcagatcatcaaaactctcagaaaacacagttattgttggtgtagtacgcagggtggatagagaagagttgtccgtaatgcctttcatttctgctggatttacaaggGTTCTGCCCATCATTGTCTTTTTCAGCTGTGTCATATCCGTTCTCTACCACGTGGGCCTCATGCAGTGGGTGATCCTGAAGATTGCCTGGCTGATGCAAGTCACCATGGGCACCACAGCCACTGAGACCCTGAGTGTGGCTGGAAACATCTTTGTGAGCCAGACCGAGGCTCCATTACTGATCCGGCCCTACTTGGCAGACATGACACTCTCTGAAGTCCACGTTGTCATGACCGGAGGTTACGCCACCATTGCTGGCAGCCTGCTGGGTGCCTACATCTCCTTTGGGATCGATGCCACCTCGTTGATTGCAGCCTCTGTGATGGCTGCCCCTTGTGCCTTGGCCCTCTCCAAGCTGGTCTACCCGGAGGTGGAGGAGTCCAAGTTTAGGAGGGAGGAAGGAGTGAAACTGACCTATGGAGATGCTCAGAACCTCATAGAAGCAGCCAGCACTGGGGCCGCCATCTCCGTGAAGGTGGTCGCCAACATCGCTGCCAACCTGATTGCGTTCCTGGCTGTGCTGGACTTTATCAATGCTGCCCTCTCCTGGCTGGGAGACATGGTGGACATCCAAGGGCTCAGCTTCCAGCTCATCTGCTCCTACATCCTGCGGCCTGTAGCCTTCTTGATGGGTGTGGCGTGGGAGGACTGCCCAGTGGTAGCTGAGCTGCTGGGGATCAAGCTGTTTCTGAACGAGTTTGTGGCCTATCAAGACCTCTCCAAGTACAAGCAACGCCGCCTGGCAGGGGCCGAGGAGTGGGTCGGCGACAGGAAGCAGTGGATCTCCGTCAGAGCTGAAGTCCTCACGACGTTTGCCCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGATCATGCTGGGAGGCTTGACCTCCATGGTCCCCCAACGGAAGAGCGACTTCTCCCAGATAGTGCTCCGGGCGCTCTTCACGGGAGCCTGTGTGTCCCTGGTGAACGCCTGTATGGCAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTGCATGTCCCTCTTGAACACGACCCTCAGCAGCAGTAGCTTTGAGATTTACCAGTGCTGCCGTGAGGCCTTCCAGAGCGTCAATCCAGAGTTCAGCCCAGAGGCCCTGGACAACTGCTGTCGGTTTTACAACCACACGATCTGTGCACAGTGA MGCAPSIHISERLVAEDAPSPAAPPLSSGGPRLPQGQKTAALPRTRGAGLLESELRDGSGKKVAVADVQFGPMRFHQDQLQVLLVFTKEDNQCNGFCRACEKAGFKCTVTKEAQAVLACFLDKHHDIIIIDHRNPRQLDAEALCRSIRSSKLSENTVIVGVVRRVDREELSVMPFISAGFTRVLPIIVFFSCVISVLYHVGLMQWVILKIAWLMQVTMGTTATETLSVAGNIFVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIAGSLLGAYISFGIDATSLIAASVMAAPCALALSKLVYPEVEESKFRREEGVKLTYGDAQNLIEAASTGAAISVKVVANIAANLIAFLAVLDFINAALSWLGDMVDIQGLSFQLICSYILRPVAFLMGVAWEDCPVVAELLGIKLFLNEFVAYQDLSKYKQRRLAGAEEWVGDRKQWISVRAEVLTTFALCGFANFSSIGIMLGGLTSMVPQRKSDFSQIVLRALFTGACVSLVNACMAGILYMPRGAEVDCMSLLNTTLSSSSFEIYQCCREAFQSVNPEFSPEALDNCCRFYNHTICAQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31184 KAZN::ENSG00000233290 ENSG00000189337.17::ENSG00000233290.4 HCC1428 SRR8615816 SRR8639183 BREAST carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:14960875:+ chr1:14219287-15444539:+ chr1:15287371:+ ENSG00000233290 ENSG00000233290.4 lncRNA - - chr1:82212413-82848205:- chr1:82486273:- chr1:82678097-83313888:- chr1:82951956:- chr1:14978322,chr1:14978321 chr1:82492983,chr1:82492984 NA NA chr1:15304818,chr1:15304817 chr1:82958666,chr1:82958667 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.1303 GT 1.9086 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31186 CTNND1::SMTNL1 ENSG00000198561.16::ENSG00000214872.9 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1424 FALSE NA FALSE NA CTNND1 ENSG00000198561.16 protein_coding + + chr11:57753243-57819546:+ chr11:57762046:+ chr11:57520715-57587018:+ chr11:57529518:+ SMTNL1 ENSG00000214872.9 protein_coding + + chr11:57537595-57550272:+ chr11:57549968:+ chr11:57305068-57317745:+ chr11:57317441:+ chr11:57771622,chr11:57771621 chr11:57548730,chr11:57548726 NA NA chr11:57539094,chr11:57539093 chr11:57316203,chr11:57316199 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CTNND1:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.20Mb] 217 132 217 132 ONLY_REF_SPLICE YES_LDAS 3.6751 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE catenin delta 1 2 large intestine carcinoma epithelial nonsense FALSE NA NA NA NA NA NA NA NA NA 31187 PUM1::TRERF1 ENSG00000134644.16::ENSG00000124496.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PUM1 ENSG00000134644.16 protein_coding - - chr1:30931506-31065991:- chr1:30941151:- chr1:31404353-31538838:- chr1:31413998:- TRERF1 ENSG00000124496.13 protein_coding - - chr6:42224931-42452051:- chr6:42269848:- chr6:42192669-42419789:- chr6:42237586:- chr1:30937541,chr1:30938030,chr1:30938032 chr6:42280516,chr6:42280516,chr6:42280515 NA NA chr1:31410388,chr1:31410877,chr1:31410879 chr6:42248254,chr6:42248254,chr6:42248253 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr6] 132 64 132 64 ONLY_REF_SPLICE YES_LDAS 2.064 GT 1.9219 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31188 MIA2::GEMIN2 ENSG00000150527.18::ENSG00000092208.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1425 FALSE NA FALSE NA MIA2 ENSG00000150527.18 protein_coding + + chr14:39230231-39388513:+ chr14:39327022:+ chr14:39699435-39857717:+ chr14:39796226:+ GEMIN2 ENSG00000092208.19 protein_coding + + chr14:39114285-39136973:+ chr14:39136440:+ chr14:39583489-39606177:+ chr14:39605644:+ chr14:39342798,chr14:39342798 chr14:39133638,chr14:39133636 NA NA chr14:39812002,chr14:39812002 chr14:39602842,chr14:39602840 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SH3_2|46-98|2.8e-15 none INTRACHROMOSOMAL[chr14:0.09Mb];LOCAL_REARRANGEMENT:+:[93258] 129 77 129 77 ONLY_REF_SPLICE YES_LDAS 2.1693 GT 1.7819 AG 1.9656 ENST00000640607.2 1-3655 ENST00000250379.13 726-765 chr14|+|[0]39234115-39234229[0]|[1]39236922-39237055[2]|[0]39240561-39240647[2]|[0]39246911-39248141[0]|[1]39252748-39252966[0]|[1]39253071-39253171[2]|[0]39276934-39277065[2]|[0]39279337-39279358[0]|[1]39279449-39279537[2]|[0]39291019-39291096[2]|[0]39293271-39293381[2]|[0]39294000-39294071[2]|[0]39294925-39295029[2]|[0]39299864-39299986[2]|[0]39302129-39302249[0]|[1]39303478-39303524[2]|[0]39304291-39304381[0]|[1]39308449-39308587[1]|[2]39313340-39313441[1]|[2]39314739-39314799[2]|[0]39315683-39315718[2]|[0]39317944-39318011[1]|[2]39319209-39319291[0]|[1]39320928-39321056[0]|[1]39326864-39327022[0]<==>chr14|+|[2]39136440-39136479[2] atggcaaaatttggcgttcacagaatccttcttctggctatttctctgacaaagtgtctggagagtacaaaactgctggcagaccttaaaaaatgtggtgacttggaatgtgaagctttaataaacagagtctcagccatgagagattatagaggacctgactgccgatacctgaacttcactaagggagaagagatatctgtttatgttaaacttgcaggagaaagggaagatttgtgggcaggaagtaaaggaaaggagtttggatattttcccagagatgcagtccagattgaagaggtgttcatatctgaggaaattcagatgtcaacgaaagaatctgactttctttgtcttcttggagtaagttacacatttgacaatgaagatagtgaattaaacggtgattatggtgaaaatatatatccttatgaagaagataaagatgaaaaatctagtatatatgaaagtgattttcagatagaacctggattttatgcaacttatgaaagtactttgtttgaagaccaagttccagcattagaggctcctgaagatatcggaagtaccagtgaatcaaaagactgggaagaagtagttgttgaaagtatggaacaggatcgtattccagaagtgcatgtcccaccatcttcagctgtgtctggagtcaaagaatggtttggattgggaggagaacaagctgaagagaaggcttttgaatcagttattgaacctgtacaagaaagctcatttcggagtagaaaaatagcagtggaagatgagaatgacctagaggaattaaataatggtgagcctcaaacagaacatcagcaagaatctgaatcagaaattgattcagtgccaaagacacagtctgaactagcatctgagtcagagcacattcccaaacctcaatccactggttggtttggtggaggatttacaagttatttaggttttggagatgaggatacagggcttgaattaatagctgaagaaagcaatccaccactacaagattttcccaattccatatcatctgataaagaagccacagttccatgtacagaaatattaacagaaaaaaaagacacaatcactaatgatagcttgagtctcaagccaagttggtttgattttggttttgctatactaggctttgcatatgccaaggaagataaaattatgttagatgacaggaaaaatgaagaagatggtggggcagatgaacatgaacatcctctaacaagtgaattagaccctgaaaaagaacaagaaatagaaacgataaaaattatagaaacagaagatcaaatagacaagaaaccagtctcagaaaaaacagacgaatctgatactataccatatttgaaaaagttcttgtataattttgacaacccttggaacttccagaacattccaaaggaaacagaattgccatttcccaaacagatactggatcaaaataatgtaattgaaaatgaagaaactggagaattttccattgataattatcccacagataatacaaaagttatgatattcaaaagttcatacagtctgtcagatatggtctctaacatagagttacctacgagaattcacgaagaagtatattttgaaccctcatcttctaaagatagtgatgaaaattcgaaaccatcagtagacaccgaagggcctgctctggtggagatagacagatctgtggaaaataccctgctaaatagtcagatggtttcaactgataactctttgtcttctcaaaattatatttctcagaaagaagatgcttctgagtttcagattctgaaatacttattccaaattgatgtttatgatttcatgaattctgcattttcaccaattgtaattcttacagaaagggttgtggcagcactgcctgaaggtatgagaccagattctaatctttatggttttccatgggaattggtgatatgtgcagctgttgttggattttttgctgttctcttttttttgtggagaagttttagatcggttaggagtcggctttatgtgggacgagagaaaaagcttgctctaatgctttctggactaattgaagaaaaaagtaaactacttgaaaaatttagccttgttcaaaaagagtatgaaggctatgaagtagagtcatctttaaaggatgccagctttgagaaggaggcaacagaagcacaaagtttggaggcaacctgtgaaaagctgaacaggtccaattctgaacttgaggatgaaatactctgtctagaaaaagagttaaaagaagagaaatccaaacattctgaacaagatgaattgatggcggatatttcaaaaaggatacagtctctagaagatgagtcaaaatccctcaaatcacaagtagctgaagccaaaatgaccttcaagatatttcaaatgaatgaagaacgactgaagatagcaataaaagatgctttgaatgaaaattctcaacttcaggaaagccagaaacagcttttgcaagaagctgaagtatggaaagaacaagtgagtgaacttaataaacagaaagtaacatttgaagactccaaagtacatgcagaacaagttctaaatgataaagaaagtcacatcaagactctgactgaacgcttgttaaagatgaaagattgggctgctatgcttggagaagacataacggatgatgataacttggaattagaaatgaacagtgaatcggaaaatggtgcttacttagataatcctccaaaaggagctttgaagaaactgattcatgctgctaagttaaatgcttctttaaaaaccttagaaggagaaagaaaccaaatttatattcagttgtctgaagttgataaaacaaaggaagagcttacagagcatattaaaaatcttcagactgaacaagcatctttgcagtcagaaaacacacattttgaaaatgagaatcagaagcttcaacagaaacttaaagtaatgactgaattatatcaagaaaatgaaatgaaactccacaggaaattaacagtagaggaaaattatcggttagagaaagaagagaaactttctaaagtagatgaaaagatcagccatgccactgaagagctggagacctatagaaagcgagccaaagatcttgaagaagaattggagagaactattcattcttatcaagggcagattatttcccatgagaaaaaagcacatgataattggttggcagctcggaatgctgaaagaaacctcaatgatttaaggaaagaaaatgctcacaacagacaaaaattaactgaaacagagcttaaatttgaacttttagaaaaagatccttatgcactcgatgttccaaatacagcatttggcagagagcattccccatatggtccctcaccattgggttggccttcatctgaaacaagagcttttctctctcctccaactttgttggagggtccactcagactctcacctttgcttccagggggaggaggaagaggctcacgaggcccagggaatcctctggaccatcagattaccaatgaaagaggagaatcaagctgtgataggttaaccgatcctcatagggctccctctgacactgggtctctgtcacctccatgggaccaggaccgtaggatgatgtttcctccgccagGTATTTTGACCAACGTGATTTAGCTGATGAGCCATCTTGA MAKFGVHRILLLAISLTKCLESTKLLADLKKCGDLECEALINRVSAMRDYRGPDCRYLNFTKGEEISVYVKLAGEREDLWAGSKGKEFGYFPRDAVQIEEVFISEEIQMSTKESDFLCLLGVSYTFDNEDSELNGDYGENIYPYEEDKDEKSSIYESDFQIEPGFYATYESTLFEDQVPALEAPEDIGSTSESKDWEEVVVESMEQDRIPEVHVPPSSAVSGVKEWFGLGGEQAEEKAFESVIEPVQESSFRSRKIAVEDENDLEELNNGEPQTEHQQESESEIDSVPKTQSELASESEHIPKPQSTGWFGGGFTSYLGFGDEDTGLELIAEESNPPLQDFPNSISSDKEATVPCTEILTEKKDTITNDSLSLKPSWFDFGFAILGFAYAKEDKIMLDDRKNEEDGGADEHEHPLTSELDPEKEQEIETIKIIETEDQIDKKPVSEKTDESDTIPYLKKFLYNFDNPWNFQNIPKETELPFPKQILDQNNVIENEETGEFSIDNYPTDNTKVMIFKSSYSLSDMVSNIELPTRIHEEVYFEPSSSKDSDENSKPSVDTEGPALVEIDRSVENTLLNSQMVSTDNSLSSQNYISQKEDASEFQILKYLFQIDVYDFMNSAFSPIVILTERVVAALPEGMRPDSNLYGFPWELVICAAVVGFFAVLFFLWRSFRSVRSRLYVGREKKLALMLSGLIEEKSKLLEKFSLVQKEYEGYEVESSLKDASFEKEATEAQSLEATCEKLNRSNSELEDEILCLEKELKEEKSKHSEQDELMADISKRIQSLEDESKSLKSQVAEAKMTFKIFQMNEERLKIAIKDALNENSQLQESQKQLLQEAEVWKEQVSELNKQKVTFEDSKVHAEQVLNDKESHIKTLTERLLKMKDWAAMLGEDITDDDNLELEMNSESENGAYLDNPPKGALKKLIHAAKLNASLKTLEGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASLQSENTHFENENQKLQQKLKVMTELYQENEMKLHRKLTVEENYRLEKEEKLSKVDEKISHATEELETYRKRAKDLEEELERTIHSYQGQIISHEKKAHDNWLAARNAERNLNDLRKENAHNRQKLTETELKFELLEKDPYALDVPNTAFGREHSPYGPSPLGWPSSETRAFLSPPTLLEGPLRLSPLLPGGGGRGSRGPGNPLDHQITNERGESSCDRLTDPHRAPSDTGSLSPPWDQDRRMMFPPPGILTNVI*LMSHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31189 AGPAT5::MCPH1 ENSG00000155189.12::ENSG00000147316.15 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1427 FALSE NA FALSE NA AGPAT5 ENSG00000155189.12 protein_coding + + chr8:6708642-6761503:+ chr8:6741751:+ chr8:6566163-6619024:+ chr8:6599272:+ MCPH1 ENSG00000147316.15 protein_coding + + chr8:6406592-6648508:+ chr8:6642994:+ chr8:6264113-6506029:+ chr8:6500515:+ chr8:6742184,chr8:6742177 chr8:6635790,chr8:6635780 NA NA chr8:6599705,chr8:6599698 chr8:6493311,chr8:6493301 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Acyltransferase|83-194|2.7e-20^Acyltransf_C|251-326|9.9e-18 none ["MCPH1:Oncogene"];["ChimerKB","Klijn_CellLines","DEEPEST2019","DepMap2023","Cosmic","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_REARRANGEMENT:+:[59853] 91 49 91 49 ONLY_REF_SPLICE YES_LDAS 1.4743 GT 1.9329 AG 1.7465 ENST00000285518.11 1-586 ENST00000344683.10 2453-2508 chr8|+|[0]6708669-6708887[2]|[0]6724870-6724939[0]|[1]6730711-6730826[2]|[0]6732561-6732650[2]|[0]6741661-6741751[0]<==>chr8|+|[1]6642994-6643049[2] atgctgctgtccctggtgctccacacgtactccatgcgctacctgctgcccagcgtcgtgctcctgggcacggcgcccacctacgtgttggcctggggggtctggcggctgctctccgccttcctgcccgcccgcttctaccaagcgctggacgaccggctctactgcgtctaccagagcatggtgctcttcttcttcgagaattacaccggggtccagatattgctatatggagatttgccaaaaaataaagaaaatataatatatttagcaaatcatcaaagcacagttgactggattgttgctgacatcttggccatcaggcagaatgcgctaggacatgtgcgctacgtgctgaaagaagggttaaaatggctgccattgtatgggtgttactttgctcagcatggaggaatctatgtaaagcgcagtgccaaatttaacgagaaagagatgcgaaacaagttgcagagctacgtggacgcaggaactccaatgtatcttgtgatttttccagaaggtacaaggtataatccagagcaaacaaaagtcctttcagctagtcaggcatttgctgcccaacgtgATTCCATCACCCAGCACAAGGTCTGTGCCCCTGAAAACTACCTATTGTCACAATGA MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRDSITQHKVCAPENYLLSQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31190 KMT2E::LHFPL3 ENSG00000005483.23::ENSG00000187416.13 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1426 FALSE NA FALSE NA KMT2E ENSG00000005483.23 protein_coding + + chr7:104940943-105115019:+ chr7:105081797:+ chr7:104581390-104755466:+ chr7:104722244:+ LHFPL3 ENSG00000187416.13 protein_coding + + chr7:104328603-104908561:+ chr7:104906187:+ chr7:103969051-104549008:+ chr7:104546634:+ chr7:105089004,chr7:105089003 chr7:104903203,chr7:104903199 NA NA chr7:104729451,chr7:104729450 chr7:104543650,chr7:104543646 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ASH2L-like_WH|107-167|0.00012^PHD_5|117-164|2.5e-15^PHD|121-163|3.8e-11^PHD_2|131-163|1.1e-07^ASH2L-like_WH|226-246|2.4^SET|343-445|3.1e-17 none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.11Mb] 83 37 83 37 ONLY_REF_SPLICE YES_LDAS 1.2636 GT 1.8256 AG 1.9329 ENST00000257745.9 1-1358 ENST00000424859.7 683-711 chr7|+|[0]105040953-105041023[1]|[2]105062164-105062278[2]|[0]105063351-105063580[1]|[2]105066727-105066807[1]|[2]105073619-105073677[0]|[1]105074643-105074815[2]|[0]105076043-105076081[2]|[0]105076963-105077193[2]|[0]105077303-105077433[1]|[2]105078846-105078963[2]|[0]105081688-105081797[1]<==>chr7|+|[1]104906187-104906215[2] atgagcatagtgatcccattgggggttgatacagcagagacgtcatacttggaaatggctgcaggttcagaaccagaatccgtagaagctagccctgtggtagttgagaaatccaacagttatccccaccagttatataccagcagctcacatcattcacacagttacattggtttgccctatgcggaccataattatggtgctcgtcctcctccgacacctccggcttcccctcctccatcagtccttattagcaaaaatgaagtaggcatatttaccactcctaattttgatgaaacttccagtgctactacaatcagcacatctgaggatggaagttatggtactgatgtaaccaggtgcatatgtggttttacacatgatgatggatacatgatctgttgtgacaaatgcagcgtttggcaacatattgactgcatggggattgataggcagcatattcctgatacatatctatgtgaacgttgtcagcctaggaatttggataaagagagggcagtgctactacaacgccggaaaagggaaaatatgtcagatggtgataccagtgcaactgagagtggtgatgaggttcctgtggaattatatactgcatttcagcatactccaacatcaattactttaactgcttcaagagtttccaaagttaatgataaaagaaggaaaaaaagcggggagaaagaacaacacatttcaaaatgtaaaaaggcatttcgtgaaggatctaggaagtcatcaagagttaagggttcagctccagagattgatccttcatctgatggttcaaattttggatgggagacaaagatcaaagcatggatggatcgatatgaagaagcaaataacaaccagtacagtgagggtgttcagagggaggcacaaagaatagctctgagattaggcaatggaaatgacaaaaaagagatgaataaatccgatttgaataccaacaatttgctcttcaaacctcctgtagagagccatatacaaaagaataagaaaattcttaaatctgcaaaagatttgcctcctgatgcacttatcattgaatacagagggaagtttatgctgagagaacagtttgaagcaaatgggtatttctttaaaagaccatacccttttgtgttattctactctaaatttcatgggctagaaatgtgtgttgatgcaaggacttttgggaatgaggctcgattcatcaggcggtcttgtacacccaatgcagaggtgaggcatgaaattcaagatggaaccatacatctttatatttattctatacacagtattccaaagggaactgaaattactattgcctttgattttgactatggaaattgTTCTGCTAAGCCAATATTCTCTAGAATGA MSIVIPLGVDTAETSYLEMAAGSEPESVEASPVVVEKSNSYPHQLYTSSSHHSHSYIGLPYADHNYGARPPPTPPASPPPSVLISKNEVGIFTTPNFDETSSATTISTSEDGSYGTDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQRRKRENMSDGDTSATESGDEVPVELYTAFQHTPTSITLTASRVSKVNDKRRKKSGEKEQHISKCKKAFREGSRKSSRVKGSAPEIDPSSDGSNFGWETKIKAWMDRYEEANNNQYSEGVQREAQRIALRLGNGNDKKEMNKSDLNTNNLLFKPPVESHIQKNKKILKSAKDLPPDALIIEYRGKFMLREQFEANGYFFKRPYPFVLFYSKFHGLEMCVDARTFGNEARFIRRSCTPNAEVRHEIQDGTIHLYIYSIHSIPKGTEITIAFDFDYGNCSAKPIFSRM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Skin,Ovary,Stomach,Uterus_corpus exact FALSE NA NA NA NA NA NA NA NA NA TRUE Breast BREAST exact 105014535 FALSE 104906187 TRUE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31191 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1430 TRUE 2560 TRUE 984 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27495680:+ chr12:27599669-27655118:+ chr12:27648613:+ chr12:27551612,chr12:27551613 chr12:27487879,chr12:27487877 NA NA chr12:27704545,chr12:27704546 chr12:27640812,chr12:27640810 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPFIBP1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.02Mb];LOCAL_REARRANGEMENT:+:[21246] 60 25 60 17.44 ONLY_REF_SPLICE YES_LDAS 0.8155 GT 1.4256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31193 POFUT1::TM9SF4 ENSG00000101346.15::ENSG00000101337.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1429 FALSE NA FALSE NA POFUT1 ENSG00000101346.15 protein_coding + + chr20:32207855-32238658:+ chr20:32228455:+ chr20:30795658-30826461:+ chr20:30816258:+ TM9SF4 ENSG00000101337.16 protein_coding + + chr20:32109714-32167258:+ chr20:32142982:+ chr20:30697517-30755061:+ chr20:30730785:+ chr20:32229876,chr20:32229874 chr20:32141968,chr20:32141963 NA NA chr20:30817679,chr20:30817677 chr20:30729771,chr20:30729766 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame O-FucT|34-368|1.7e-79 EMP70-PARTIAL|~478-581|1.1e-213^DUF4229|517-530|1.5^DUF4229|564-603|0.047 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.04Mb];LOCAL_REARRANGEMENT:+:[40622] 51 27 51 27 ONLY_REF_SPLICE YES_LDAS 0.8214 GT 1.9086 AG 1.7819 ENST00000375749.8 1-735 ENST00000217315.9 478-1878 chr20|+|[0]32207942-32208065[0]|[1]32210071-32210192[2]|[0]32215269-32215451[2]|[0]32216609-32216721[1]|[2]32228263-32228455[2]<==>chr20|+|[0]32142982-32143105[0]|[1]32145091-32145209[2]|[0]32145312-32145423[0]|[1]32146785-32146855[2]|[0]32149634-32149766[0]|[1]32150622-32150703[1]|[2]32150800-32150875[2]|[0]32155103-32155186[2]|[0]32157794-32157969[1]|[2]32158451-32158514[2]|[0]32159992-32160111[2]|[0]32161276-32161365[2]|[0]32165295-32165444[2] atgggcgccgccgcgtgggcacggccgctgagcgtgtctttcctgctgctgcttctgccgctcccggggatgcctgcgggctcctgggacccggccggttacctgctctactgcccctgcatggggcgctttgggaaccaggccgatcacttcttgggctctctggcatttgcaaagctgctaaaccgtaccttggctgtccctccttggattgagtaccagcatcacaagcctcctttcaccaacctccatgtgtcctaccagaagtacttcaagctggagcccctccaggcttaccatcgggtcatcagcttggaggatttcatggagaagctggcacccacccactggccccctgagaagcgggtggcatactgctttgaggtggcagcccagcgaagcccagataagaagacgtgccccatgaaggaaggaaacccctttggcccattctgggatcagtttcatgtgagtttcaacaagtcggagctttttacaggcatttccttcagtgcttcctacagagaacaatggagccagagattttctccaaaggaacatccggtgcttgccctgccaggagccccagcccagttccccgtcctagaggaacacaggccactacagaagtacatggtatggtcagacgaaatggtgaagacgggagaggcccagattcatgcccaccttgtccggccctatgtgggcattcatctgcgcattggctctgactggATCTACCTGCACAACCACCTCTCATTCATCCTTTACTATCATCGGGAGGACATGGAAGAGGACCAGGAGCACACGTACCGTGTCGTCCGCTTCGAGGTGATTCCCCAGAGCATCAGGCTGGAGGACCTCAAAGCAGATGAGAAGAGTTCGTGCACTCTGCCTGAGGGTACCAACTCCTCGCCCCAAGAAATTGACCCCACCAAGGAGAATCAGCTGTACTTCACCTACTCTGTCCACTGGGAGGAAAGTGATATCAAATGGGCCTCTCGCTGGGACACTTACCTGACCATGAGTGACGTCCAGATCCACTGGTTTTCTATCATTAACTCCGTTGTTGTGGTCTTCTTCCTGTCAGGTATCCTGAGCATGATTATCATTCGGACCCTCCGGAAGGACATTGCCAACTACAACAAGGAGGATGACATTGAAGACACCATGGAGGAGTCTGGGTGGAAGTTGGTGCACGGCGACGTCTTCAGGCCCCCCCAGTACCCCATGATCCTCAGCTCCCTGCTGGGCTCAGGCATTCAGCTGTTCTGTATGATCCTCATCGTCATCTTTGTAGCCATGCTTGGGATGCTGTCGCCCTCCAGCCGGGGAGCTCTCATGACCACAGCCTGCTTCCTCTTCATGTTCATGGGGGTGTTTGGCGGATTTTCTGCTGGCCGTCTGTACCGCACTTTAAAAGGCCATCGGTGGAAGAAAGGAGCCTTCTGTACGGCAACTCTGTACCCTGGTGTGGTTTTTGGCATCTGCTTCGTATTGAATTGCTTCATTTGGGGAAAGCACTCATCAGGAGCGGTGCCCTTTCCCACCATGGTGGCTCTGCTGTGCATGTGGTTCGGGATCTCCCTGCCCCTCGTCTACTTGGGCTACTACTTCGGCTTCCGAAAGCAGCCATATGACAACCCTGTGCGCACCAACCAGATTCCCCGGCAGATCCCCGAGCAGCGGTGGTACATGAACCGATTTGTGGGCATCCTCATGGCTGGGATCTTGCCCTTCGGCGCCATGTTCATCGAGCTCTTCTTCATCTTCAGTGCTATCTGGGAGAATCAGTTCTATTACCTCTTTGGCTTCCTGTTCCTTGTTTTCATCATCCTGGTGGTATCCTGTTCACAAATCAGCATCGTCATGGTGTACTTCCAGCTGTGTGCAGAGGATTACCGCTGGTGGTGGAGAAATTTCCTAGTCTCCGGGGGCTCTGCATTCTACGTCCTGGTTTATGCCATCTTTTATTTCGTTAACAAGCTGGACATCGTGGAGTTCATCCCCTCTCTCCTCTACTTTGGCTACACGGCCCTCATGGTCTTGTCCTTCTGGCTGCTAACGGGTACCATCGGCTTCTATGCAGCCTACATGTTTGTTCGCAAGATCTATGCTGCTGTGAAGATAGACTGA MGAAAWARPLSVSFLLLLLPLPGMPAGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYREQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLVRPYVGIHLRIGSDWIYLHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKSSCTLPEGTNSSPQEIDPTKENQLYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31195 ANKRD40::ANKRD40CL ENSG00000154945.7::ENSG00000167117.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1436 FALSE NA FALSE NA ANKRD40 ENSG00000154945.7 protein_coding - - chr17:50693198-50707914:- chr17:50707521:- chr17:48770559-48785275:- chr17:48784882:- ANKRD40CL ENSG00000167117.10 protein_coding - - chr17:50761029-50767557:- chr17:50761506:- chr17:48838390-48844918:- chr17:48838867:- chr17:50701666,chr17:50701673 chr17:50762089,chr17:50762093 NA NA chr17:48779027,chr17:48779034 chr17:48839450,chr17:48839454 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ank_4|14-64|1.1e-14^Ank_2|16-79|1.4e-13^Ank_3|16-37|0.075^Ank|17-40|0.0024^Ank_5|21-40|0.27^Ank_5|37-83|1.6e-08^Ank|43-72|1.8e-11^Ank_3|43-69|9.5e-09 none none 39 4 39 4 ONLY_REF_SPLICE YES_LDAS 0.4528 GT 1.9219 AG 1.8295 ENST00000285243.7 1-134 ENST00000450727.6 202-345 chr17|-|[1]50707521-50707654[0]<==>chr17|-|[2]50761363-50761506[0] atgaacgccctcctagagcagaaggagcagcaggagaggctgcgggaggccgcggccttaggggacattcgggaggtgcagaaactggtggagagcggggtggatgtgaactcccaaaatgaggtcaacggctgGACAAAGACATTCGAAGACTGCGGGACTTTCAGGAAGTGGAACTCATTTTAATGAAAAATGGAAGCTCCAGATTGACAGAATATGTGCCATCTCTGACAGAAAGGCCCTGCTATGATAGCAAAGCTGCAAAAATGACTTATTAA MNALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTKTFEDCGTFRKWNSF**KMEAPD*QNMCHL*QKGPAMIAKLQK*LI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31197 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1432 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129574336:- chr3:129274057-129325519:- chr3:129293179:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sema|365-524|1.1e-17^PSI|549-601|1.3e-13^TIG_plexin|625-700|1.1e-09^PSI|711-749|2.5e-07^TIG_plexin|783-810|0.3^PSI|848-872|0.055^TIG|891-978|1.1e-14^TIG|981-1063|8.5e-15^TIG|1069-1143|1.6e-12^TIG|1209-1259|5.7e-05^Insulin_TMD|1271-1296|8.9e-05^Plexin_cytopl|1345-1888|2.9e-190^Plexin_RBD|1541-1652|2.7e-44 C2orf69|40-160|5e-05^DUF2207_C|43-115|0.11^Exonuc_VII_L|44-129|9.6e-05^Tmemb_cc2|48-455|1.1e-170^CYP38_PsbQ-like|50-139|1.9e-06^SYMPK_PTA1_N|57-127|0.5^CbiA|118-233|0.00029^CYP38_PsbQ-like|283-360|0.031^CbiA|284-310|0.42^Exonuc_VII_L|295-397|0.00035^DUF2207_C|323-450|0.00012^C2orf69|337-394|0.44^SYMPK_PTA1_N|354-442|1.4e-05^CYP38_PsbQ-like|362-377|0.7 ["ChimerKB","Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.04Mb];LOCAL_REARRANGEMENT:-:[40974] 26 23 26 9.39 ONLY_REF_SPLICE YES_LDAS 0.3727 GT 1.7465 AG 1.9086 ENST00000324093.9 1-2685 ENST00000698214.1 28-1413 chr3|-|[2]129574336-129574490[1]|[0]129575469-129575562[0]|[2]129575766-129575855[0]|[2]129578329-129578433[0]|[2]129583567-129583669[2]|[1]129584125-129584233[1]|[0]129584385-129584562[0]|[2]129585952-129586081[2]|[1]129586172-129586272[0]|[2]129586588-129586719[0]|[2]129589351-129589527[0]|[2]129605329-129606639[0]<==>chr3|-|[2]129651481-129651795[0]|[2]129654968-129655103[2]|[1]129670330-129671264[0] atggctcctcgcgccgcgggcggcgcaccccttagcgcccgggccgccgccgccagccccccgccgttccagacgccgccgcggtgcccggtgccgctgctgttgctgctgctcctgggggcggcgcgggccggcgccctggagatccagcgtcggttcccctcgcccacgcccaccaacaacttcgccctggacggcgcggcggggaccgtgtacctggcggccgtcaaccgcctctatcagctgtcgggcgccaacctgagcctggaggccgaggcggccgtgggcccggtgcccgacagcccgctgtgtcacgctccgcagctgccgcaggcctcgtgcgagcacccgcggcgcctcacggacaactacaacaagatcctgcagctggaccccggccagggcctggtagtcgtgtgcgggtccatctaccagggcttctgccagctgcggcgccggggcaacatctcggccgtggccgtgcgcttcccgcccgccgcgccgcccgccgagcccgtcacggtgttccccagcatgctgaacgtggcggccaaccacccgaacgcgtccaccgtggggctagttctgcctcccgccgcgggcgcggggggcagccgcctgctcgtgggcgccacgtacaccggttacggcagctccttcttcccgcgcaaccgcagcctggaggaccaccgcttcgagaacacgcccgagatcgccatccgctccctggacacgcgcggcgacctggccaagctcttcaccttcgacctcaacccctccgacgacaacatcctcaagatcaagcagggcgccaaggagcagcacaagctgggcttcgtgagcgccttcctgcacccgtccgacccgccgccgggtgcacagtcctacgcgtacctggcgctcaacagcgaggcgcgcgcgggcgacaaggagagccaggcgcggagcctgctggcgcgcatctgcctgccccacggcgccggcggcgacgccaagaagctcaccgagtcctacatccagttgggcttgcagtgcgcgggcggcgcgggccgcggcgacctctacagccgcctggtgtcggtcttcccagcccgggagcggctctttgctgtcttcgagcggccccaggggtcccccgcggcccgcgctgctccggccgcactctgcgccttccgcttcgccgacgtgcgagccgccatccgagctgcgcgcaccgcctgcttcgtggaaccggcgcccgacgtggtggcggtgctcgacagcgtggtgcagggcacgggaccggcctgtgagcgcaagctcaacatccagctccagccagagcagctggactgtggagctgctcacctgcagcacccgctgtccatcctgcagcccctgaaggccacgcccgtgttccgcgccccgggcctcacctccgtggccgtggccagcgtcaacaactacacagcggtcttcctgggcacggtcaacgggaggcttctcaagatcaacctgaacgagagcatgcaggtggtgagcaggcgggtggtgactgtggcctatggggagcccgtgcaccatgtcatgcagtttgacccagcagactccggttacctttacctgatgacgtcccaccagatggccagggtgaaggtcgccgcctgcaacgtgcactccacctgtggggactgcgtgggtgcggcggacgcctactgcggctggtgtgccctggagacgcggtgcaccttgcagcaggactgcaccaattccagccagcagcatttctggaccagtgccagcgagggccccagccgctgtcctgccatgaccgtcctgccttccgagatcgatgtgcgccaggagtacccaggcatgatcctgcagatctcgggcagcctgcccagcctcagtggcatggagatggcctgtgactatgggaacaacatccgcactgtggctcgggtcccaggccctgcctttggtcaccagattgcctactgcaacctcctgccgagggaccagtttccgcccttcccccccaaccaggaccacgtgactgttgagatgtctgtgagggtcaatgggcggaacatcgtcaaggccaatttcaccatctacgactgcagccgcactgcacaagtgtacccccacacagcctgtaccagctgcctgtcggcacagtggccctgtttctggtgcagccagcagcactcctgtgtttccaaccagtctcggtgcgaggcctcaccaaaccccacgagccctcaggactgcccccggaccctgctctcacccctggcacccgtgcctacgggtggctcccagaacatcctggtgcctctggccaacactgcctttttccagggtgcagccctggagtgtagttttgggctggaggagatcttcgaggctgtgtgggtgaatgagtctgttgtacgctgtgaccaggtggtgctgcacacgacccggaagagccaggtgttcccgctcagcctccaactaaaggggcggccagcccgattcctggacagccctgagcccatgacagtcatggtctataactgtgccatgggcagccccgactgttcccagtgcctgggccgcgaagacctgggtcacctgtgcatgtggagtgatggctgccgcctgcgggggcctctgcagcccatggctggcacctgccccgcccccgagatccacgcgATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGGTTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCTCACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCAAGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAAGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAGCATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCAGGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGACTATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATGACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAATCGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCCAAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGTAGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTTATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGATGA MAPRAAGGAPLSARAAAASPPPFQTPPRCPVPLLLLLLLGAARAGALEIQRRFPSPTPTNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVVVCGSIYQGFCQLRRRGNISAVAVRFPPAAPPAEPVTVFPSMLNVAANHPNASTVGLVLPPAAGAGGSRLLVGATYTGYGSSFFPRNRSLEDHRFENTPEIAIRSLDTRGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDKESQARSLLARICLPHGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPARERLFAVFERPQGSPAARAAPAALCAFRFADVRAAIRAARTACFVEPAPDVVAVLDSVVQGTGPACERKLNIQLQPEQLDCGAAHLQHPLSILQPLKATPVFRAPGLTSVAVASVNNYTAVFLGTVNGRLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQMARVKVAACNVHSTCGDCVGAADAYCGWCALETRCTLQQDCTNSSQQHFWTSASEGPSRCPAMTVLPSEIDVRQEYPGMILQISGSLPSLSGMEMACDYGNNIRTVARVPGPAFGHQIAYCNLLPRDQFPPFPPNQDHVTVEMSVRVNGRNIVKANFTIYDCSRTAQVYPHTACTSCLSAQWPCFWCSQQHSCVSNQSRCEASPNPTSPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQGAALECSFGLEEIFEAVWVNESVVRCDQVVLHTTRKSQVFPLSLQLKGRPARFLDSPEPMTVMVYNCAMGSPDCSQCLGREDLGHLCMWSDGCRLRGPLQPMAGTCPAPEIHAIERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDAGKALGVISNFQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRDYSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVVFIAFLWKHWDALFSYVERFFSSPR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31198 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1434 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129578329:- chr3:129274057-129325519:- chr3:129297172:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sema|365-524|1.1e-17^PSI|549-601|1.3e-13^TIG_plexin|625-700|1.1e-09^PSI|711-749|2.5e-07^TIG_plexin|783-810|0.3^PSI|848-872|0.055^TIG|891-978|1.1e-14^TIG|981-1063|8.5e-15^TIG|1069-1143|1.6e-12^TIG|1209-1259|5.7e-05^Insulin_TMD|1271-1296|8.9e-05^Plexin_cytopl|1345-1888|2.9e-190^Plexin_RBD|1541-1652|2.7e-44 C2orf69|40-160|5e-05^DUF2207_C|43-115|0.11^Exonuc_VII_L|44-129|9.6e-05^Tmemb_cc2|48-455|1.1e-170^CYP38_PsbQ-like|50-139|1.9e-06^SYMPK_PTA1_N|57-127|0.5^CbiA|118-233|0.00029^CYP38_PsbQ-like|283-360|0.031^CbiA|284-310|0.42^Exonuc_VII_L|295-397|0.00035^DUF2207_C|323-450|0.00012^C2orf69|337-394|0.44^SYMPK_PTA1_N|354-442|1.4e-05^CYP38_PsbQ-like|362-377|0.7 ["ChimerKB","Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.04Mb];LOCAL_REARRANGEMENT:-:[40974] 24 10 24 2.29 ONLY_REF_SPLICE YES_LDAS 0.2768 GT 1.8323 AG 1.9086 ENST00000324093.9 1-2346 ENST00000698214.1 28-1413 chr3|-|[2]129578329-129578433[0]|[2]129583567-129583669[2]|[1]129584125-129584233[1]|[0]129584385-129584562[0]|[2]129585952-129586081[2]|[1]129586172-129586272[0]|[2]129586588-129586719[0]|[2]129589351-129589527[0]|[2]129605329-129606639[0]<==>chr3|-|[2]129651481-129651795[0]|[2]129654968-129655103[2]|[1]129670330-129671264[0] atggctcctcgcgccgcgggcggcgcaccccttagcgcccgggccgccgccgccagccccccgccgttccagacgccgccgcggtgcccggtgccgctgctgttgctgctgctcctgggggcggcgcgggccggcgccctggagatccagcgtcggttcccctcgcccacgcccaccaacaacttcgccctggacggcgcggcggggaccgtgtacctggcggccgtcaaccgcctctatcagctgtcgggcgccaacctgagcctggaggccgaggcggccgtgggcccggtgcccgacagcccgctgtgtcacgctccgcagctgccgcaggcctcgtgcgagcacccgcggcgcctcacggacaactacaacaagatcctgcagctggaccccggccagggcctggtagtcgtgtgcgggtccatctaccagggcttctgccagctgcggcgccggggcaacatctcggccgtggccgtgcgcttcccgcccgccgcgccgcccgccgagcccgtcacggtgttccccagcatgctgaacgtggcggccaaccacccgaacgcgtccaccgtggggctagttctgcctcccgccgcgggcgcggggggcagccgcctgctcgtgggcgccacgtacaccggttacggcagctccttcttcccgcgcaaccgcagcctggaggaccaccgcttcgagaacacgcccgagatcgccatccgctccctggacacgcgcggcgacctggccaagctcttcaccttcgacctcaacccctccgacgacaacatcctcaagatcaagcagggcgccaaggagcagcacaagctgggcttcgtgagcgccttcctgcacccgtccgacccgccgccgggtgcacagtcctacgcgtacctggcgctcaacagcgaggcgcgcgcgggcgacaaggagagccaggcgcggagcctgctggcgcgcatctgcctgccccacggcgccggcggcgacgccaagaagctcaccgagtcctacatccagttgggcttgcagtgcgcgggcggcgcgggccgcggcgacctctacagccgcctggtgtcggtcttcccagcccgggagcggctctttgctgtcttcgagcggccccaggggtcccccgcggcccgcgctgctccggccgcactctgcgccttccgcttcgccgacgtgcgagccgccatccgagctgcgcgcaccgcctgcttcgtggaaccggcgcccgacgtggtggcggtgctcgacagcgtggtgcagggcacgggaccggcctgtgagcgcaagctcaacatccagctccagccagagcagctggactgtggagctgctcacctgcagcacccgctgtccatcctgcagcccctgaaggccacgcccgtgttccgcgccccgggcctcacctccgtggccgtggccagcgtcaacaactacacagcggtcttcctgggcacggtcaacgggaggcttctcaagatcaacctgaacgagagcatgcaggtggtgagcaggcgggtggtgactgtggcctatggggagcccgtgcaccatgtcatgcagtttgacccagcagactccggttacctttacctgatgacgtcccaccagatggccagggtgaaggtcgccgcctgcaacgtgcactccacctgtggggactgcgtgggtgcggcggacgcctactgcggctggtgtgccctggagacgcggtgcaccttgcagcaggactgcaccaattccagccagcagcatttctggaccagtgccagcgagggccccagccgctgtcctgccatgaccgtcctgccttccgagatcgatgtgcgccaggagtacccaggcatgatcctgcagatctcgggcagcctgcccagcctcagtggcatggagatggcctgtgactatgggaacaacatccgcactgtggctcgggtcccaggccctgcctttggtcaccagattgcctactgcaacctcctgccgagggaccagtttccgcccttcccccccaaccaggaccacgtgactgttgagatgtctgtgagggtcaatgggcggaacatcgtcaaggccaatttcaccatctacgactgcagccgcactgcacaagtgtacccccacacagcctgtaccagctgcctgtcggcacagtggccctgtttctggtgcagccagcagcactcctgtgtttccaaccagtctcggtgcgaggcctcaccaaaccccacgagccctcaggactgcccccggaccctgctctcacccctggcacccgtgcctacgggtggctcccagaacatcctggtgcctctggccaacactgcctttttccagATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGGTTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCTCACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCAAGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAAGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAGCATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCAGGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGACTATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATGACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAATCGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCCAAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGTAGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTTATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGATGA MAPRAAGGAPLSARAAAASPPPFQTPPRCPVPLLLLLLLGAARAGALEIQRRFPSPTPTNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVVVCGSIYQGFCQLRRRGNISAVAVRFPPAAPPAEPVTVFPSMLNVAANHPNASTVGLVLPPAAGAGGSRLLVGATYTGYGSSFFPRNRSLEDHRFENTPEIAIRSLDTRGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDKESQARSLLARICLPHGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPARERLFAVFERPQGSPAARAAPAALCAFRFADVRAAIRAARTACFVEPAPDVVAVLDSVVQGTGPACERKLNIQLQPEQLDCGAAHLQHPLSILQPLKATPVFRAPGLTSVAVASVNNYTAVFLGTVNGRLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQMARVKVAACNVHSTCGDCVGAADAYCGWCALETRCTLQQDCTNSSQQHFWTSASEGPSRCPAMTVLPSEIDVRQEYPGMILQISGSLPSLSGMEMACDYGNNIRTVARVPGPAFGHQIAYCNLLPRDQFPPFPPNQDHVTVEMSVRVNGRNIVKANFTIYDCSRTAQVYPHTACTSCLSAQWPCFWCSQQHSCVSNQSRCEASPNPTSPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQIERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDAGKALGVISNFQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRDYSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVVFIAFLWKHWDALFSYVERFFSSPR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31199 KLK5::CDH23 ENSG00000167754.13::ENSG00000107736.22 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1438 FALSE NA FALSE NA KLK5 ENSG00000167754.13 protein_coding - - chr19:50943303-50953093:- chr19:50948640:- chr19:51446559-51456349:- chr19:51451896:- CDH23 ENSG00000107736.22 protein_coding + + chr10:71396920-71815947:+ chr10:71741694:+ chr10:73156677-73575704:+ chr10:73501451:+ chr19:50944475,chr19:50944478 chr10:71741186,chr10:71741183 NA NA chr19:51447731,chr19:51447734 chr10:73500943,chr10:73500940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Trypsin_2|24-42|1.9^Trypsin|67-285|3.5e-72^DUF1986|79-186|1.4e-05^Trypsin_2|95-250|6.5e-07 none ["KLK5:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr10] 23 5 23 5 ONLY_REF_SPLICE YES_LDAS 0.2949 GT 1.9329 AG 1.6729 ENST00000391809.6 1-726 ENST00000224721.12 4618-10065 chr19|-|[2]50948640-50948773[1]|[0]50948859-50949115[2]|[1]50949855-50950116[1]|[0]50952585-50952657[0]<==>chr10|+|[0]71741694-71741921[2]|[0]71777680-71777901[2]|[0]71778189-71778308[2]|[0]71779267-71779447[0]|[1]71784287-71784420[2]|[0]71784891-71785100[2]|[0]71785631-71785738[2]|[0]71788940-71789042[0]|[1]71790288-71790413[0]|[1]71791132-71791335[0]|[1]71793182-71793640[0]|[1]71797104-71797220[0]|[1]71798354-71798578[0]|[1]71799111-71799280[2]|[0]71799492-71799629[2]|[0]71800636-71800755[2]|[0]71802898-71803075[0]|[1]71803209-71803420[2]|[0]71805806-71805997[2]|[0]71806168-71806281[2]|[0]71807277-71807406[0]|[1]71807516-71807767[0]|[1]71807846-71808007[0]|[1]71809820-71810076[2]|[0]71810472-71810569[1]|[2]71811315-71811435[2]|[0]71811511-71811590[1]|[2]71811713-71811753[0]|[1]71811955-71812015[1]|[2]71812480-71812609[2]|[0]71812768-71812890[2]|[0]71813244-71813348[2]|[0]71814952-71815278[2] atggctacagcaagacccccctggatgtgggtgctctgtgctctgatcacagccttgcttctgggggtcacagagcatgttctcgccaacaatgatgtttcctgtgaccacccctctaacaccgtgccctctgggagcaaccaggacctgggagctggggccggggaagacgcccggtcggatgacagcagcagccgcatcatcaatggatccgactgcgatatgcacacccagccgtggcaggccgcgctgttgctaaggcccaaccagctctactgcggggcggtgttggtgcatccacagtggctgctcacggccgcccactgcaggaagaaagttttcagagtccgtctcggccactactccctgtcaccagtttatgaatctgggcagcagatgttccagggggtcaaatccatcccccaccctggctactcccaccctggccactctaacgacctcatgctcatcaaactgaacagaagaattcgtcccactaaagatgtcagacccatcaacgtctcctctcattgtccctctgctgggacaaagtgcttggtgtctggctgggggacaaccaagagcccccaagtgcacttccctaaggtcctccagtgcttgaatatcagcgtgctaagtcagaaaaggtgcgaggatgcttacccgagacagatagatgacaccatgttctgcgccggtgacaaagcaggtagagactcctgccagAACGTGGGTGGAGGTACTGCTGTGGTCCAGGTGAGAGCCACTGACCGTGACATCGGGATCAACAGTGTTCTGTCCTACTACATCACCGAGGGCAACAAGGACATGGCCTTCCGCATGGACCGCATCAGCGGTGAGATCGCCACACGGCCTGCCCCGCCTGACCGCGAGCGCCAGAGCTTCTACCACCTGGTGGCCACTGTGGAGGACGAGGGCACCCCAACCCTGTCGGCCACCACGCACGTGTACGTGACCATTGTGGATGAGAATGATAACGCGCCCATGTTCCAGCAGCCCCACTATGAGGTGCTGCTGGATGAGGGCCCAGACACGCTCAACACCAGCCTCATCACCATCCAGGCACTGGACCTGGATGAGGGTCCCAACGGCACAGTCACCTATGCCATCGTCGCAGGCAACATCGTCAACACCTTCCGCATCGACAGACACATGGGTGTCATCACTGCTGCCAAAGAGCTGGACTACGAGATCAGCCACGGCCGCTACACCCTGATCGTCACTGCCACAGACCAGTGCCCCATCTTATCCCACCGCCTCACCTCTACCACCACGGTGCTTGTGAATGTGAATGACATCAACGACAATGTGCCTACCTTCCCCCGGGACTATGAGGGACCATTTGAAGTCACTGAGGGCCAGCCGGGGCCCAGAGTGTGGACCTTCCTGGCCCATGACCGAGACTCAGGACCCAACGGGCAGGTGGAGTACAGCATCATGGATGGAGACCCTCTGGGGGAGTTTGTGATCTCTCCTGTGGAGGGGGTGCTAAGGGTCCGGAAGGACGTGGAGCTGGACCGGGAGACCATCGCCTTCTACAACCTGACCATCTGTGCCCGTGACCGGGGGATGCCCCCACTCAGCTCCACAATGCTGGTGGGGATCCGGGTGCTGGACATCAACGACAACGACCCTGTGCTGCTGAACCTGCCCATGAACATCACCATCAGCGAGAACAGCCCTGTCTCCAGCTTTGTCGCCCATGTCCTGGCCAGTGACGCTGACAGTGGCTGCAATGCACGCCTCACCTTCAACATCACTGCGGGCAACCGCGAGCGGGCCTTCTTCATCAATGCCACGACAGGGATCGTCACTGTGAACCGGCCCCTGGACCGCGAGCGGATCCCAGAGTACAAGCTGACCATTTCTGTGAAGGACAACCCGGAGAATCCACGCATAGCCAGGAGGGATTATGACTTGCTTCTGATCTTCCTTTCTGATGAGAATGACAACCACCCCCTCTTCACTAAAAGCACCTACCAGGCAGAGGTGATGGAAAACTCTCCCGCTGGCACCCCTCTCACGGTGCTCAATGGGCCCATCCTGGCCCTGGATGCAGACCAAGACATCTACGCCGTGGTGACCTACCAGCTGCTGGGTGCCCAGAGTGGCCTCTTTGACATCAACAGCAGCACCGGTGTGGTGACCGTGAGGTCAGGTGTCATCATTGACCGGGAGGCATTCTCGCCACCCATCCTGGAGCTGCTGCTGCTGGCTGAGGACATCGGGCTGCTCAACAGCACGGCCCACCTGCTCATCACCATCCTGGATGACAATGACAACCGGCCCACCTTTAGCCCTGCCACCCTCACTGTCCATCTGCTAGAGAACTGCCCGCCTGGATTCTCAGTCCTTCAAGTCACAGCCACAGATGAGGACAGTGGCCTCAATGGGGAGCTGGTCTACCGAATAGAAGCTGGGGCTCAGGACCGCTTCCTCATTCATCTGGTCACCGGGGTCATCCGTGTTGGTAATGCCACCATCGACAGAGAGGAGCAGGAGTCCTACAGGCTAACGGTGGTGGCCACCGACCGGGGCACCGTTCCTCTCTCGGGCACAGCCATTGTCACCATTCTGATCGATGACATCAATGACTCCCGCCCCGAGTTCCTCAACCCCATCCAGACAGTGAGCGTGCTGGAGTCGGCTGAGCCAGGCACTGTCATTGCCAATATCACGGCCATTGACCACGACCTCAACCCAAAGCTAGAGTACCACATTGTCGGCATTGTGGCCAAGGACGACACTGATCGCCTGGTGCCCAACCAGGAGGACGCCTTTGCTGTGAATATCAACACAGGATCTGTAATGGTGAAGTCCCCCATGAATCGGGAGCTGGTTGCCACCTATGAGGTCACTCTCTCAGTGATTGACAATGCCAGCGACCTACCAGAGCGCTCTGTCAGTGTGCCAAATGCCAAGCTGACTGTCAACGTCCTGGACGTCAATGACAATACGCCCCAGTTCAAGCCCTTTGGGATCACCTACTACATGGAGCGGATCCTGGAGGGGGCCACCCCTGGGACCACACTCATTGCTGTGGCAGCCGTGGACCCTGACAAGGGCCTTAATGGGCTGGTCACCTACACCCTGCTGGACCTGGTGCCCCCAGGGTATGTCCAGCTGGAGGACTCCTCGGCAGGGAAGGTCATTGCCAACCGGACAGTGGACTACGAGGAGGTGCACTGGCTCAACTTTACCGTGAGGGCCTCAGACAACGGGTCCCCGCCCCGGGCAGCTGAGATCCCTGTCTACCTGGAAATCGTGGACATCAATGACAACAACCCCATCTTTGACCAGCCCTCCTACCAGGAGGCTGTCTTTGAGGATGTGCCTGTGGGCACAATCATCCTGACAGTCACTGCCACTGATGCTGACTCAGGCAACTTTGCACTCATTGAGTACAGCCTTGGAGATGGAGAGAGCAAGTTTGCCATCAACCCCACCACGGGTGACATCTATGTGCTGTCTTCTCTGGACCGGGAGAAGAAGGACCACTATATCCTGACTGCCTTGGCCAAAGACAACCCTGGGGATGTAGCCAGCAACCGTCGCGAAAATTCAGTGCAGGTGGTGATCCAAGTGCTGGATGTCAATGACTGCCGGCCACAGTTCTCCAAGCCCCAGTTCAGCACAAGCGTGTATGAGAATGAGCCGGCGGGCACCTCGGTCATCACCATGATGGCCACTGACCAGGATGAAGGTCCCAATGGAGAGTTGACCTACTCACTTGAGGGCCCTGGCGTGGAGGCCTTCCATGTGGACATGGACTCGGGCTTGGTGACCACACAGCGGCCACTGCAGTCCTACGAGAAGTTCAGTCTGACCGTGGTGGCCACAGATGGTGGAGAGCCCCCACTCTGGGGCACCACCATGCTCCTGGTGGAGGTCATCGACGTCAATGACAACCGCCCTGTCTTTGTGCGCCCACCCAACGGCACCATCCTCCACATCAGAGAGGAGATCCCGCTGCGCTCCAACGTGTACGAGGTCTACGCCACGGACAAGGATGAGGGCCTCAACGGGGCGGTGCGCTACAGCTTCCTGAAGACTGCGGGCAACCGGGACTGGGAGTTCTTCATCATCGACCCAATCAGCGGCCTCATCCAGACTGCTCAGCGCCTGGACCGCGAGTCGCAGGCGGTGTACAGCCTCATCTTGGTGGCCAGCGACCTGGGCCAGCCAGTGCCATACGAGACTATGCAGCCGCTGCAGGTGGCCCTGGAGGACATCGATGACAACGAACCCCTTTTCGTGAGGCCTCCAAAAGGCAGCCCCCAGTACCAGCTGCTGACAGTGCCTGAGCACTCACCACGCGGCACCCTCGTGGGCAACGTGACAGGCGCAGTGGATGCAGATGAGGGCCCCAACGCGATCGTGTACTACTTCATCGCAGCCGGCAACGAAGAGAAGAACTTCCATCTGCAGCCCGATGGGTGTCTGCTGGTGCTGCGGGACCTGGACCGGGAGCGAGAAGCCATCTTCTCCTTCATCGTCAAGGCCTCCAGCAATCGCAGCTGGACACCTCCCCGTGGACCCTCCCCAACCCTCGACCTGGTTGCTGACCTCACACTGCAGGAGGTGCGCGTTGTGCTAGAGGACATCAACGACCAGCCACCACGCTTCACCAAGGCTGAGTACACTGCAGGGGTGGCCACCGACGCCAAGGTGGGCTCAGAGTTGATCCAGGTGCTGGCCCTGGATGCAGACATTGGCAACAACAGCCTTGTCTTCTACAGCATTCTGGCCATCCACTACTTCCGGGCCCTTGCCAACGACTCTGAAGATGTGGGCCAGGTCTTCACCATGGGGAGCATGGACGGCATTCTGCGCACCTTCGACCTCTTCATGGCCTACAGCCCCGGCTACTTCGTGGTGGACATTGTGGCCCGAGACCTGGCAGGCCACAACGACACGGCCATCATCGGCATCTACATCCTGAGGGACGACCAGCGCGTCAAGATCGTCATTAACGAGATCCCCGACCGTGTGCGCGGCTTCGAGGAGGAGTTCATCCACCTGCTCTCCAACATCACTGGGGCCATTGTCAATACTGACAATGTGCAGTTCCATGTGGACAAGAAGGGCCGGGTGAACTTTGCGCAGACAGAACTGCTTATCCACGTGGTGAACCGCGATACCAACCGCATCCTGGACGTGGACCGGGTGATCCAGATGATCGATGAGAACAAGGAGCAGCTACGGAATCTTTTCCGGAACTACAACGTCCTGGACGTGCAGCCTGCCATCTCTGTCCGGCTGCCGGATGACATGTCTGCCCTGCAGATGGCGATCATCGTCCTGGCTATCCTCCTGTTCCTGGCCGCCATGCTCTTTGTCCTCATGAACTGGTACTACAGGACTGTACACAAGAGGAAGCTCAAGGCCATTGTGGCTGGCTCAGCTGGGAATCGTGGCTTCATCGACATCATGGACATGCCTAACACCAACAAGTACTCCTTTGATGGAGCCAACCCTGTGTGGCTGGATCCCTTCTGTCGGAACCTGGAGCTGGCCGCCCAGGCGGAGCATGAGGATGACCTACCGGAGAACCTGAGTGAGATCGCCGACCTGTGGAACAGCCCCACGCGCACCCATGGAACTTTTGGGCGTGAGCCAGCAGCTGTCAAGCCTGATGATGACCGATACCTGCGGGCTGCCATCCAGGAGTATGACAACATTGCCAAGCTGGGCCAGATCATTCGTGAGGGGCCAATCAAGGGCTCGCTGCTGAAGGTGGTCCTGGAGGATTACCTGCGGCTCAAAAAGCTCTTTGCACAGCGGATGGTGCAAAAAGCCTCCTCCTGCCACTCCTCCATCTCTGAGCTGATACAGACTGAGCTGGACGAGGAGCCAGGAGACCACAGCCCAGGGCAGGGTAGCCTGCGCTTCCGCCACAAGCCACCAGTGGAGCTCAAGGGGCCCGATGGGATCCATGTGGTGCACGGCAGCACGGGCACGCTGCTGGCCACCGACCTCAACAGCCTGCCCGAGGAAGACCAGAAGGGCCTGGGCCGCTCGCTGGAGACGCTGACCGCTGCCGAGGCCACTGCCTTCGAGCGCAACGCCCGCACAGAATCCGCCAAATCCACACCCCTGCACAAACTTCGCGACGTGATCATGGAGACCCCCCTGGAGATCACAGAGCTGTGA MATARPPWMWVLCALITALLLGVTEHVLANNDVSCDHPSNTVPSGSNQDLGAGAGEDARSDDSSSRIINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQNVGGGTAVVQVRATDRDIGINSVLSYYITEGNKDMAFRMDRISGEIATRPAPPDRERQSFYHLVATVEDEGTPTLSATTHVYVTIVDENDNAPMFQQPHYEVLLDEGPDTLNTSLITIQALDLDEGPNGTVTYAIVAGNIVNTFRIDRHMGVITAAKELDYEISHGRYTLIVTATDQCPILSHRLTSTTTVLVNVNDINDNVPTFPRDYEGPFEVTEGQPGPRVWTFLAHDRDSGPNGQVEYSIMDGDPLGEFVISPVEGVLRVRKDVELDRETIAFYNLTICARDRGMPPLSSTMLVGIRVLDINDNDPVLLNLPMNITISENSPVSSFVAHVLASDADSGCNARLTFNITAGNRERAFFINATTGIVTVNRPLDRERIPEYKLTISVKDNPENPRIARRDYDLLLIFLSDENDNHPLFTKSTYQAEVMENSPAGTPLTVLNGPILALDADQDIYAVVTYQLLGAQSGLFDINSSTGVVTVRSGVIIDREAFSPPILELLLLAEDIGLLNSTAHLLITILDDNDNRPTFSPATLTVHLLENCPPGFSVLQVTATDEDSGLNGELVYRIEAGAQDRFLIHLVTGVIRVGNATIDREEQESYRLTVVATDRGTVPLSGTAIVTILIDDINDSRPEFLNPIQTVSVLESAEPGTVIANITAIDHDLNPKLEYHIVGIVAKDDTDRLVPNQEDAFAVNINTGSVMVKSPMNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVNVLDVNDNTPQFKPFGITYYMERILEGATPGTTLIAVAAVDPDKGLNGLVTYTLLDLVPPGYVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQPSYQEAVFEDVPVGTIILTVTATDADSGNFALIEYSLGDGESKFAINPTTGDIYVLSSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIQVLDVNDCRPQFSKPQFSTSVYENEPAGTSVITMMATDQDEGPNGELTYSLEGPGVEAFHVDMDSGLVTTQRPLQSYEKFSLTVVATDGGEPPLWGTTMLLVEVIDVNDNRPVFVRPPNGTILHIREEIPLRSNVYEVYATDKDEGLNGAVRYSFLKTAGNRDWEFFIIDPISGLIQTAQRLDRESQAVYSLILVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSPQYQLLTVPEHSPRGTLVGNVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLVLRDLDREREAIFSFIVKASSNRSWTPPRGPSPTLDLVADLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKVGSELIQVLALDADIGNNSLVFYSILAIHYFRALANDSEDVGQVFTMGSMDGILRTFDLFMAYSPGYFVVDIVARDLAGHNDTAIIGIYILRDDQRVKIVINEIPDRVRGFEEEFIHLLSNITGAIVNTDNVQFHVDKKGRVNFAQTELLIHVVNRDTNRILDVDRVIQMIDENKEQLRNLFRNYNVLDVQPAISVRLPDDMSALQMAIIVLAILLFLAAMLFVLMNWYYRTVHKRKLKAIVAGSAGNRGFIDIMDMPNTNKYSFDGANPVWLDPFCRNLELAAQAEHEDDLPENLSEIADLWNSPTRTHGTFGREPAAVKPDDDRYLRAAIQEYDNIAKLGQIIREGPIKGSLLKVVLEDYLRLKKLFAQRMVQKASSCHSSISELIQTELDEEPGDHSPGQGSLRFRHKPPVELKGPDGIHVVHGSTGTLLATDLNSLPEEDQKGLGRSLETLTAAEATAFERNARTESAKSTPLHKLRDVIMETPLEITEL* FALSE FALSE NA NA TRUE hsa-mir-7152 chr10:71790747-71790800:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31200 PPFIBP1::SMCO2 ENSG00000110841.14::ENSG00000165935.10 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1431 TRUE 2560 TRUE 984 PPFIBP1 ENSG00000110841.14 protein_coding + + chr12:27523431-27695564:+ chr12:27524365:+ chr12:27676364-27848497:+ chr12:27677298:+ SMCO2 ENSG00000165935.10 protein_coding + + chr12:27446736-27502185:+ chr12:27494300:+ chr12:27599669-27655118:+ chr12:27647233:+ chr12:27551612,chr12:27551613 chr12:27487879,chr12:27487877 NA NA chr12:27704545,chr12:27704546 chr12:27640812,chr12:27640810 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPFIBP1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.02Mb];LOCAL_REARRANGEMENT:+:[21246] 20 31 20 13.56 ONLY_REF_SPLICE YES_LDAS 0.3534 GT 1.4256 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE PTPRF interacting protein, binding protein 1 (liprin beta 1) 1 Spitzoid tumour, inflammatory myofibroblastic tumour epithelial, mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31208 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1433 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129573594:- chr3:129274057-129325519:- chr3:129292437:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Sema|365-524|1.1e-17^PSI|549-601|1.3e-13^TIG_plexin|625-700|1.1e-09^PSI|711-749|2.5e-07^TIG_plexin|783-810|0.3^PSI|848-872|0.055^TIG|891-978|1.1e-14^TIG|981-1063|8.5e-15^TIG|1069-1143|1.6e-12^TIG|1209-1259|5.7e-05^Insulin_TMD|1271-1296|8.9e-05^Plexin_cytopl|1345-1888|2.9e-190^Plexin_RBD|1541-1652|2.7e-44 C2orf69|40-160|5e-05^DUF2207_C|43-115|0.11^Exonuc_VII_L|44-129|9.6e-05^Tmemb_cc2|48-455|1.1e-170^CYP38_PsbQ-like|50-139|1.9e-06^SYMPK_PTA1_N|57-127|0.5^CbiA|118-233|0.00029^CYP38_PsbQ-like|283-360|0.031^CbiA|284-310|0.42^Exonuc_VII_L|295-397|0.00035^DUF2207_C|323-450|0.00012^C2orf69|337-394|0.44^SYMPK_PTA1_N|354-442|1.4e-05^CYP38_PsbQ-like|362-377|0.7 ["ChimerKB","Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.04Mb];LOCAL_REARRANGEMENT:-:[40974] 14 32 14 17.31 ONLY_REF_SPLICE YES_LDAS 0.3297 GT 1.8295 AG 1.9086 ENST00000324093.9 1-2837 ENST00000698214.1 28-1413 chr3|-|[1]129573594-129573745[0]|[2]129574336-129574490[1]|[0]129575469-129575562[0]|[2]129575766-129575855[0]|[2]129578329-129578433[0]|[2]129583567-129583669[2]|[1]129584125-129584233[1]|[0]129584385-129584562[0]|[2]129585952-129586081[2]|[1]129586172-129586272[0]|[2]129586588-129586719[0]|[2]129589351-129589527[0]|[2]129605329-129606639[0]<==>chr3|-|[2]129651481-129651795[0]|[2]129654968-129655103[2]|[1]129670330-129671264[0] atggctcctcgcgccgcgggcggcgcaccccttagcgcccgggccgccgccgccagccccccgccgttccagacgccgccgcggtgcccggtgccgctgctgttgctgctgctcctgggggcggcgcgggccggcgccctggagatccagcgtcggttcccctcgcccacgcccaccaacaacttcgccctggacggcgcggcggggaccgtgtacctggcggccgtcaaccgcctctatcagctgtcgggcgccaacctgagcctggaggccgaggcggccgtgggcccggtgcccgacagcccgctgtgtcacgctccgcagctgccgcaggcctcgtgcgagcacccgcggcgcctcacggacaactacaacaagatcctgcagctggaccccggccagggcctggtagtcgtgtgcgggtccatctaccagggcttctgccagctgcggcgccggggcaacatctcggccgtggccgtgcgcttcccgcccgccgcgccgcccgccgagcccgtcacggtgttccccagcatgctgaacgtggcggccaaccacccgaacgcgtccaccgtggggctagttctgcctcccgccgcgggcgcggggggcagccgcctgctcgtgggcgccacgtacaccggttacggcagctccttcttcccgcgcaaccgcagcctggaggaccaccgcttcgagaacacgcccgagatcgccatccgctccctggacacgcgcggcgacctggccaagctcttcaccttcgacctcaacccctccgacgacaacatcctcaagatcaagcagggcgccaaggagcagcacaagctgggcttcgtgagcgccttcctgcacccgtccgacccgccgccgggtgcacagtcctacgcgtacctggcgctcaacagcgaggcgcgcgcgggcgacaaggagagccaggcgcggagcctgctggcgcgcatctgcctgccccacggcgccggcggcgacgccaagaagctcaccgagtcctacatccagttgggcttgcagtgcgcgggcggcgcgggccgcggcgacctctacagccgcctggtgtcggtcttcccagcccgggagcggctctttgctgtcttcgagcggccccaggggtcccccgcggcccgcgctgctccggccgcactctgcgccttccgcttcgccgacgtgcgagccgccatccgagctgcgcgcaccgcctgcttcgtggaaccggcgcccgacgtggtggcggtgctcgacagcgtggtgcagggcacgggaccggcctgtgagcgcaagctcaacatccagctccagccagagcagctggactgtggagctgctcacctgcagcacccgctgtccatcctgcagcccctgaaggccacgcccgtgttccgcgccccgggcctcacctccgtggccgtggccagcgtcaacaactacacagcggtcttcctgggcacggtcaacgggaggcttctcaagatcaacctgaacgagagcatgcaggtggtgagcaggcgggtggtgactgtggcctatggggagcccgtgcaccatgtcatgcagtttgacccagcagactccggttacctttacctgatgacgtcccaccagatggccagggtgaaggtcgccgcctgcaacgtgcactccacctgtggggactgcgtgggtgcggcggacgcctactgcggctggtgtgccctggagacgcggtgcaccttgcagcaggactgcaccaattccagccagcagcatttctggaccagtgccagcgagggccccagccgctgtcctgccatgaccgtcctgccttccgagatcgatgtgcgccaggagtacccaggcatgatcctgcagatctcgggcagcctgcccagcctcagtggcatggagatggcctgtgactatgggaacaacatccgcactgtggctcgggtcccaggccctgcctttggtcaccagattgcctactgcaacctcctgccgagggaccagtttccgcccttcccccccaaccaggaccacgtgactgttgagatgtctgtgagggtcaatgggcggaacatcgtcaaggccaatttcaccatctacgactgcagccgcactgcacaagtgtacccccacacagcctgtaccagctgcctgtcggcacagtggccctgtttctggtgcagccagcagcactcctgtgtttccaaccagtctcggtgcgaggcctcaccaaaccccacgagccctcaggactgcccccggaccctgctctcacccctggcacccgtgcctacgggtggctcccagaacatcctggtgcctctggccaacactgcctttttccagggtgcagccctggagtgtagttttgggctggaggagatcttcgaggctgtgtgggtgaatgagtctgttgtacgctgtgaccaggtggtgctgcacacgacccggaagagccaggtgttcccgctcagcctccaactaaaggggcggccagcccgattcctggacagccctgagcccatgacagtcatggtctataactgtgccatgggcagccccgactgttcccagtgcctgggccgcgaagacctgggtcacctgtgcatgtggagtgatggctgccgcctgcgggggcctctgcagcccatggctggcacctgccccgcccccgagatccacgcgattgagcccctgagtggcccgttggacggtgggaccctgctgaccatccgaggaaggaacctgggccggcggctcagtgacgtggcccacggcgtgtggattggtggtgtggcctgtgagccactgcctgacagatacacggtgtcggaggaATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGGTTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCTCACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCAAGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAAGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAGCATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCAGGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGACTATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATGACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAATCGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCCAAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGTAGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTTATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGATGA MAPRAAGGAPLSARAAAASPPPFQTPPRCPVPLLLLLLLGAARAGALEIQRRFPSPTPTNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVVVCGSIYQGFCQLRRRGNISAVAVRFPPAAPPAEPVTVFPSMLNVAANHPNASTVGLVLPPAAGAGGSRLLVGATYTGYGSSFFPRNRSLEDHRFENTPEIAIRSLDTRGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDKESQARSLLARICLPHGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPARERLFAVFERPQGSPAARAAPAALCAFRFADVRAAIRAARTACFVEPAPDVVAVLDSVVQGTGPACERKLNIQLQPEQLDCGAAHLQHPLSILQPLKATPVFRAPGLTSVAVASVNNYTAVFLGTVNGRLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQMARVKVAACNVHSTCGDCVGAADAYCGWCALETRCTLQQDCTNSSQQHFWTSASEGPSRCPAMTVLPSEIDVRQEYPGMILQISGSLPSLSGMEMACDYGNNIRTVARVPGPAFGHQIAYCNLLPRDQFPPFPPNQDHVTVEMSVRVNGRNIVKANFTIYDCSRTAQVYPHTACTSCLSAQWPCFWCSQQHSCVSNQSRCEASPNPTSPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQGAALECSFGLEEIFEAVWVNESVVRCDQVVLHTTRKSQVFPLSLQLKGRPARFLDSPEPMTVMVYNCAMGSPDCSQCLGREDLGHLCMWSDGCRLRGPLQPMAGTCPAPEIHAIEPLSGPLDGGTLLTIRGRNLGRRLSDVAHGVWIGGVACEPLPDRYTVSEESNGWK*AALPKHPVQWPPVPMAASTQTLWMEHQTLSAQRLPLLTCSRRS*SSQNKSRLHKQPGTTTLLNT*SLPTVQTNSRLPASSKSLRRRTRNLPKLSSSCKRNLSTTTGSSER*SRMGSPGSQRMSSGTCTRV*RM*EQR*LASVKVWWIVSKVGFPASPRPPIQQQAL*SQSPERLPHSFGTNLAVQTTSPT*RTL*RKGKWMMRGRLWE*FQTFSLAQNMVVKKIVLVPLQAQWEPTAPQGASL*EHPAPKQTPWTCRAQDLMHYYMRSRRSGKPRPD*RNPLRLSRNIIRGTIP**CRPYRRSDIDVNDWKNS*MT*QSSTRMKS*T*SRNWQAWKKKSRISPMNGPGTSRRPWRHARRASPRWSCSSSSSRWCS*KGWRMPLPGTFWANSSTSSWLSWQSFWSLSPL*PTVWSPS*RLATGRSALYSLWFLLPFSGSTGTPSSAMWNGSFHPLD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31209 PLXND1::TMCC1 ENSG00000004399.13::ENSG00000172765.19 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1435 TRUE 2561 TRUE 985 PLXND1 ENSG00000004399.13 protein_coding - - chr3:129555214-129606676:- chr3:129575766:- chr3:129274057-129325519:- chr3:129294609:- TMCC1 ENSG00000172765.19 protein_coding - - chr3:129647792-129893711:- chr3:129671264:- chr3:129366635-129612554:- chr3:129390107:- chr3:129573007,chr3:129573013 chr3:129701070,chr3:129701073 NA NA chr3:129291850,chr3:129291856 chr3:129419913,chr3:129419916 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sema|365-524|1.1e-17^PSI|549-601|1.3e-13^TIG_plexin|625-700|1.1e-09^PSI|711-749|2.5e-07^TIG_plexin|783-810|0.3^PSI|848-872|0.055^TIG|891-978|1.1e-14^TIG|981-1063|8.5e-15^TIG|1069-1143|1.6e-12^TIG|1209-1259|5.7e-05^Insulin_TMD|1271-1296|8.9e-05^Plexin_cytopl|1345-1888|2.9e-190^Plexin_RBD|1541-1652|2.7e-44 C2orf69|40-160|5e-05^DUF2207_C|43-115|0.11^Exonuc_VII_L|44-129|9.6e-05^Tmemb_cc2|48-455|1.1e-170^CYP38_PsbQ-like|50-139|1.9e-06^SYMPK_PTA1_N|57-127|0.5^CbiA|118-233|0.00029^CYP38_PsbQ-like|283-360|0.031^CbiA|284-310|0.42^Exonuc_VII_L|295-397|0.00035^DUF2207_C|323-450|0.00012^C2orf69|337-394|0.44^SYMPK_PTA1_N|354-442|1.4e-05^CYP38_PsbQ-like|362-377|0.7 ["ChimerKB","Klijn_CellLines","TumorFusionsNAR2018","DepMap2023","Cosmic","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.04Mb];LOCAL_REARRANGEMENT:-:[40974] 12 14 12 1.83 ONLY_REF_SPLICE YES_LDAS 0.1457 GT 1.7968 AG 1.9086 ENST00000324093.9 1-2436 ENST00000698214.1 28-1413 chr3|-|[2]129575766-129575855[0]|[2]129578329-129578433[0]|[2]129583567-129583669[2]|[1]129584125-129584233[1]|[0]129584385-129584562[0]|[2]129585952-129586081[2]|[1]129586172-129586272[0]|[2]129586588-129586719[0]|[2]129589351-129589527[0]|[2]129605329-129606639[0]<==>chr3|-|[2]129651481-129651795[0]|[2]129654968-129655103[2]|[1]129670330-129671264[0] atggctcctcgcgccgcgggcggcgcaccccttagcgcccgggccgccgccgccagccccccgccgttccagacgccgccgcggtgcccggtgccgctgctgttgctgctgctcctgggggcggcgcgggccggcgccctggagatccagcgtcggttcccctcgcccacgcccaccaacaacttcgccctggacggcgcggcggggaccgtgtacctggcggccgtcaaccgcctctatcagctgtcgggcgccaacctgagcctggaggccgaggcggccgtgggcccggtgcccgacagcccgctgtgtcacgctccgcagctgccgcaggcctcgtgcgagcacccgcggcgcctcacggacaactacaacaagatcctgcagctggaccccggccagggcctggtagtcgtgtgcgggtccatctaccagggcttctgccagctgcggcgccggggcaacatctcggccgtggccgtgcgcttcccgcccgccgcgccgcccgccgagcccgtcacggtgttccccagcatgctgaacgtggcggccaaccacccgaacgcgtccaccgtggggctagttctgcctcccgccgcgggcgcggggggcagccgcctgctcgtgggcgccacgtacaccggttacggcagctccttcttcccgcgcaaccgcagcctggaggaccaccgcttcgagaacacgcccgagatcgccatccgctccctggacacgcgcggcgacctggccaagctcttcaccttcgacctcaacccctccgacgacaacatcctcaagatcaagcagggcgccaaggagcagcacaagctgggcttcgtgagcgccttcctgcacccgtccgacccgccgccgggtgcacagtcctacgcgtacctggcgctcaacagcgaggcgcgcgcgggcgacaaggagagccaggcgcggagcctgctggcgcgcatctgcctgccccacggcgccggcggcgacgccaagaagctcaccgagtcctacatccagttgggcttgcagtgcgcgggcggcgcgggccgcggcgacctctacagccgcctggtgtcggtcttcccagcccgggagcggctctttgctgtcttcgagcggccccaggggtcccccgcggcccgcgctgctccggccgcactctgcgccttccgcttcgccgacgtgcgagccgccatccgagctgcgcgcaccgcctgcttcgtggaaccggcgcccgacgtggtggcggtgctcgacagcgtggtgcagggcacgggaccggcctgtgagcgcaagctcaacatccagctccagccagagcagctggactgtggagctgctcacctgcagcacccgctgtccatcctgcagcccctgaaggccacgcccgtgttccgcgccccgggcctcacctccgtggccgtggccagcgtcaacaactacacagcggtcttcctgggcacggtcaacgggaggcttctcaagatcaacctgaacgagagcatgcaggtggtgagcaggcgggtggtgactgtggcctatggggagcccgtgcaccatgtcatgcagtttgacccagcagactccggttacctttacctgatgacgtcccaccagatggccagggtgaaggtcgccgcctgcaacgtgcactccacctgtggggactgcgtgggtgcggcggacgcctactgcggctggtgtgccctggagacgcggtgcaccttgcagcaggactgcaccaattccagccagcagcatttctggaccagtgccagcgagggccccagccgctgtcctgccatgaccgtcctgccttccgagatcgatgtgcgccaggagtacccaggcatgatcctgcagatctcgggcagcctgcccagcctcagtggcatggagatggcctgtgactatgggaacaacatccgcactgtggctcgggtcccaggccctgcctttggtcaccagattgcctactgcaacctcctgccgagggaccagtttccgcccttcccccccaaccaggaccacgtgactgttgagatgtctgtgagggtcaatgggcggaacatcgtcaaggccaatttcaccatctacgactgcagccgcactgcacaagtgtacccccacacagcctgtaccagctgcctgtcggcacagtggccctgtttctggtgcagccagcagcactcctgtgtttccaaccagtctcggtgcgaggcctcaccaaaccccacgagccctcaggactgcccccggaccctgctctcacccctggcacccgtgcctacgggtggctcccagaacatcctggtgcctctggccaacactgcctttttccagggtgcagccctggagtgtagttttgggctggaggagatcttcgaggctgtgtgggtgaatgagtctgttgtacgctgtgaccaggtggtgATCGAACGGTTGGAAGTAAGCAGCCTTGCCCAAACATCCAGTGCAGTGGCCTCCAGTACCGATGGCAGCATCCACACAGACTCTGTGGATGGAACACCAGACCCTCAGCGCACAAAGGCTGCCATTGCTCACCTGCAGCAGAAGATCCTGAAGCTCACAGAACAAATCAAGATTGCACAAACAGCCCGGGACGACAACGTTGCTGAATACTTGAAGCTTGCCAACAGTGCAGACAAACAGCAGGCTGCCCGCATCAAGCAAGTCTTTGAGAAGAAGAACCAGAAATCTGCCCAAACTATCCTCCAGCTGCAAAAGAAACTTGAGCACTACCACAGGAAGCTCAGAGAGGTAGAGCAGAATGGGATCCCCCGGCAGCCAAAGGATGTCTTCAGGGACATGCACCAGGGTCTGAAGGATGTAGGAGCAAAGGTGACTGGCTTCAGTGAAGGTGTGGTGGATAGTGTCAAAGGTGGGTTTTCCAGCTTCTCCCAGGCCACCCATTCAGCAGCAGGCGCTGTAGTCTCAAAGCCCAGAGAGATTGCCTCACTCATTCGGAACAAATTTGGCAGTGCAGACAACATCCCCAACCTGAAGGACTCTTTAGAGGAAGGGCAAGTGGATGATGCGGGGAAGGCTTTGGGAGTGATTTCAAACTTTCAGTCTAGCCCAAAATATGGTAGTGAAGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTGGGAGCCAACAGCACCACAGGGGGCATCGCTGTAGGAGCATCCAGCTCCAAAACAAACACCCTGGACATGCAGAGCTCAGGATTTGATGCACTACTACATGAGATCCAGGAGATCCGGGAAACCCAGGCCAGACTAGAGGAATCCTTTGAGACTCTCAAGGAACATTATCAGAGGGACTATTCCTTAATAATGCAGACCTTACAGGAGGAGCGATATAGATGTGAACGATTGGAAGAACAGCTAAATGACCTAACAGAGCTCCACCAGAATGAAATCTTGAACTTGAAGCAGGAACTGGCAAGCATGGAAGAAAAAATCGCGTATCAGTCCTATGAACGGGCCCGGGACATCCAGGAGGCCCTGGAGGCATGCCAGACGCGCATCTCCAAGATGGAGCTGCAGCAGCAGCAGCAGCAGGTGGTGCAGCTAGAAGGGCTGGAGAATGCCACTGCCCGGAACCTTCTGGGCAAACTCATCAACATCCTCCTGGCTGTCATGGCAGTCCTTTTGGTCTTTGTCTCCACTGTAGCCAACTGTGTGGTCCCCCTCATGAAGACTCGCAACAGGACGTTCAGCACTTTATTCCTTGTGGTTTTTATTGCCTTTCTCTGGAAGCACTGGGACGCCCTCTTCAGCTATGTGGAACGGTTCTTTTCATCCCCTAGATGA MAPRAAGGAPLSARAAAASPPPFQTPPRCPVPLLLLLLLGAARAGALEIQRRFPSPTPTNNFALDGAAGTVYLAAVNRLYQLSGANLSLEAEAAVGPVPDSPLCHAPQLPQASCEHPRRLTDNYNKILQLDPGQGLVVVCGSIYQGFCQLRRRGNISAVAVRFPPAAPPAEPVTVFPSMLNVAANHPNASTVGLVLPPAAGAGGSRLLVGATYTGYGSSFFPRNRSLEDHRFENTPEIAIRSLDTRGDLAKLFTFDLNPSDDNILKIKQGAKEQHKLGFVSAFLHPSDPPPGAQSYAYLALNSEARAGDKESQARSLLARICLPHGAGGDAKKLTESYIQLGLQCAGGAGRGDLYSRLVSVFPARERLFAVFERPQGSPAARAAPAALCAFRFADVRAAIRAARTACFVEPAPDVVAVLDSVVQGTGPACERKLNIQLQPEQLDCGAAHLQHPLSILQPLKATPVFRAPGLTSVAVASVNNYTAVFLGTVNGRLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQMARVKVAACNVHSTCGDCVGAADAYCGWCALETRCTLQQDCTNSSQQHFWTSASEGPSRCPAMTVLPSEIDVRQEYPGMILQISGSLPSLSGMEMACDYGNNIRTVARVPGPAFGHQIAYCNLLPRDQFPPFPPNQDHVTVEMSVRVNGRNIVKANFTIYDCSRTAQVYPHTACTSCLSAQWPCFWCSQQHSCVSNQSRCEASPNPTSPQDCPRTLLSPLAPVPTGGSQNILVPLANTAFFQGAALECSFGLEEIFEAVWVNESVVRCDQVVIERLEVSSLAQTSSAVASSTDGSIHTDSVDGTPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDAGKALGVISNFQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEIQEIRETQARLEESFETLKEHYQRDYSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVVFIAFLWKHWDALFSYVERFFSSPR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Uterine Corpus Endometrial Carcinoma UTERUS no_match 129277271 FALSE 129373946 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31210 ENSG00000261386::AMPD3 ENSG00000261386.2::ENSG00000133805.16 HCC1187 SRR8615817 SRR8639181 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1439 FALSE NA FALSE NA ENSG00000261386 ENSG00000261386.2 lncRNA - - chr16:67549214-67563958:- chr16:67563295:- chr16:67583117-67597861:- chr16:67597198:- AMPD3 ENSG00000133805.16 protein_coding + + chr11:10308313-10507579:+ chr11:10461515:+ chr11:10329860-10529126:+ chr11:10483062:+ chr16:67552015,chr16:67552019 chr11:10460544,chr11:10460540 NA NA chr16:67585918,chr16:67585922 chr11:10482091,chr11:10482087 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1264 GT 1.5058 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31212 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1443 TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19651547:+ chr17:19551449-19589073:+ chr17:19554860:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame VHS-PARTIAL|8-52~|6.8e-22^NADH_4Fe-4S|15-43|0.086 Aldedh-PARTIAL|~154-421|2.3e-88^LuxC-PARTIAL|~154-255|5.3e-08^PT-HINT-PARTIAL|~154-185|1.9e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.68Mb] 792 380 792 366.31 ONLY_REF_SPLICE YES_LDAS 16.9178 GT 1.7465 AG 1.8256 ENST00000542206.5 1-52 ENST00000672465.1 154-1566 chr17|-|[0]17972262-17972313[0]<==>chr17|+|[0]19651547-19651778[0]|[1]19652547-19652632[2]|[0]19656366-19656574[1]|[2]19657745-19657862[2]|[0]19661127-19661268[0]|[1]19663333-19663499[2]|[0]19664948-19665047[0]|[1]19671721-19671956[2]|[0]19685275-19685397[2] atggagttcctcctggggaacccgttcagcacaccagtggggcagtgcctcgAGTGAATTCAATGTGTACAGTCAGGAAGTCATTACTGTCCTTGGGGAAATTGATTTTATGCTTGAGAATCTTCCTGAATGGGTTACTGCTAAACCAGTTAAGAAGAACGTGCTCACCATGCTGGATGAGGCCTATATTCAGCCACAGCCTCTGGGAGTGGTGCTGATAATCGGAGCTTGGAATTACCCCTTCGTTCTCACCATTCAGCCACTGATAGGAGCCATCGCTGCAGGAAATGCTGTGATTATAAAGCCTTCTGAACTGAGTGAAAATACAGCCAAGATCTTGGCAAAGCTTCTCCCTCAGTATTTAGACCAGGATCTCTATATTGTTATTAATGGTGGTGTTGAGGAAACCACGGAGCTCCTGAAGCAGCGATTTGACCACATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCATGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACTCTTGAACTGGGAGGGAAAAGTCCATGTTATATTGATAAAGATTGTGACCTGGACATTGTTTGCAGACGCATAACCTGGGGAAAATACATGAATTGTGGCCAAACCTGCATTGCACCCGACTATATTCTCTGTGAAGCATCCCTCCAAAATCAAATTGTATGGAAGATTAAGGAAACAGTGAAGGAATTTTATGGAGAAAATATAAAAGAGTCTCCTGATTATGAAAGGATCATCAATCTTCGTCATTTTAAGAGGATACTAAGTTTGCTTGAAGGACAAAAGATAGCTTTTGGTGGGGAGACTGATGAGGCCACACGCTACATAGCCCCAACAGTACTTACCGATGTTGATCCTAAAACCAAGGTGATGCAAGAAGAAATTTTTGGACCAATTCTTCCAATAGTGCCTGTGAAAAATGTAGATGAGGCCATAAATTTCATAAATGAACGTGAAAAGCCTCTGGCTCTTTATGTATTTTCGCATAACCATAAGCTCATCAAACGGATGATTGATGAGACATCCAGTGGAGGTGTCACAGGCAATGACGTCATTATGCACTTCACGCTCAACTCTTTCCCATTTGGAGGAGTGGGTTCCAGTGGGATGGGAGCTTATCACGGAAAACATAGTTTTGATACTTTTTCTCATCAGCGTCCCTGTTTATTAAAAAGTTTAAAGAGAGAAGGTGCTAACAAACTCAGATATCCTCCCAACAGCCAGTCAAAGGTGGATTGGGGAAAATTTTTTCTCTTGAAACGGTTCAACAAAGAAAAACTCGGTCTCCTGTTGCTCACTTTCCTGGGTATTGTAGCCGCTGTGCTTGTCAAGGAAGTGAGCAGCGTCTCTGCTTGGCTGCCCATCGTCTGGGATGTGAGGAGCCCCTGTGCCTGGCCACCCCATCTGGGAAGTGAGGCGCGCCTCTGCCTGGCTGCCACCACGTCTAGGAAGTGA MEFLLGNPFSTPVGQCLE*IQCVQSGSHYCPWGN*FYA*ESS*MGYC*TS*EERAHHAG*GLYSATASGSGADNRSLELPLRSHHSATDRSHRCRKCCDYKAF*TE*KYSQDLGKASPSVFRPGSLYCY*WWC*GNHGAPEAAI*PHFLYGKHCGWQNCHGSCCQASDPCDS*TGREKSMLY**RL*PGHCLQTHNLGKIHELWPNLHCTRLYSL*SIPPKSNCMED*GNSEGILWRKYKRVS*L*KDHQSSSF*EDTKFA*RTKDSFWWGD**GHTLHSPNSTYRC*S*NQGDARRNFWTNSSNSACEKCR*GHKFHK*T*KASGSLCIFA*P*AHQTDD**DIQWRCHRQ*RHYALHAQLFPIWRSGFQWDGSLSRKT*F*YFFSSASLFIKKFKERRC*QTQISSQQPVKGGLGKIFSLETVQQRKTRSPVAHFPGYCSRCACQGSEQRLCLAAHRLGCEEPLCLATPSGK*GAPLPGCHHV*EV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31213 TOM1L2::ALDH3A2 ENSG00000175662.18::ENSG00000072210.19 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1444 TRUE 2572 TRUE 986 TOM1L2 ENSG00000175662.18 protein_coding - - chr17:17843511-17972422:- chr17:17972262:- chr17:17746825-17875736:- chr17:17875576:- ALDH3A2 ENSG00000072210.19 protein_coding + + chr17:19648136-19685760:+ chr17:19656366:+ chr17:19551449-19589073:+ chr17:19559679:+ chr17:17919341,chr17:17919341,chr17:17919345,chr17:17919345 chr17:19650967,chr17:19650970,chr17:19650963,chr17:19650964 NA NA chr17:17822655,chr17:17822655,chr17:17822659,chr17:17822659 chr17:19554280,chr17:19554283,chr17:19554276,chr17:19554277 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame VHS-PARTIAL|8-52~|6.8e-22^NADH_4Fe-4S|15-43|0.086 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.68Mb] 168 101 168 13.69 ONLY_REF_SPLICE YES_LDAS 2.6537 GT 1.7465 AG 1.7232 ENST00000542206.5 1-52 ENST00000672465.1 472-1566 chr17|-|[0]17972262-17972313[0]<==>chr17|+|[0]19656366-19656574[1]|[2]19657745-19657862[2]|[0]19661127-19661268[0]|[1]19663333-19663499[2]|[0]19664948-19665047[0]|[1]19671721-19671956[2]|[0]19685275-19685397[2] atggagttcctcctggggaacccgttcagcacaccagtggggcagtgcctcgGATCTCTATATTGTTATTAATGGTGGTGTTGAGGAAACCACGGAGCTCCTGAAGCAGCGATTTGACCACATTTTCTATACGGGAAACACTGCGGTTGGCAAAATTGTCATGGAAGCTGCTGCCAAGCATCTGACCCCTGTGACTCTTGAACTGGGAGGGAAAAGTCCATGTTATATTGATAAAGATTGTGACCTGGACATTGTTTGCAGACGCATAACCTGGGGAAAATACATGAATTGTGGCCAAACCTGCATTGCACCCGACTATATTCTCTGTGAAGCATCCCTCCAAAATCAAATTGTATGGAAGATTAAGGAAACAGTGAAGGAATTTTATGGAGAAAATATAAAAGAGTCTCCTGATTATGAAAGGATCATCAATCTTCGTCATTTTAAGAGGATACTAAGTTTGCTTGAAGGACAAAAGATAGCTTTTGGTGGGGAGACTGATGAGGCCACACGCTACATAGCCCCAACAGTACTTACCGATGTTGATCCTAAAACCAAGGTGATGCAAGAAGAAATTTTTGGACCAATTCTTCCAATAGTGCCTGTGAAAAATGTAGATGAGGCCATAAATTTCATAAATGAACGTGAAAAGCCTCTGGCTCTTTATGTATTTTCGCATAACCATAAGCTCATCAAACGGATGATTGATGAGACATCCAGTGGAGGTGTCACAGGCAATGACGTCATTATGCACTTCACGCTCAACTCTTTCCCATTTGGAGGAGTGGGTTCCAGTGGGATGGGAGCTTATCACGGAAAACATAGTTTTGATACTTTTTCTCATCAGCGTCCCTGTTTATTAAAAAGTTTAAAGAGAGAAGGTGCTAACAAACTCAGATATCCTCCCAACAGCCAGTCAAAGGTGGATTGGGGAAAATTTTTTCTCTTGAAACGGTTCAACAAAGAAAAACTCGGTCTCCTGTTGCTCACTTTCCTGGGTATTGTAGCCGCTGTGCTTGTCAAGGAAGTGAGCAGCGTCTCTGCTTGGCTGCCCATCGTCTGGGATGTGAGGAGCCCCTGTGCCTGGCCACCCCATCTGGGAAGTGAGGCGCGCCTCTGCCTGGCTGCCACCACGTCTAGGAAGTGA MEFLLGNPFSTPVGQCLGSLYCY*WWC*GNHGAPEAAI*PHFLYGKHCGWQNCHGSCCQASDPCDS*TGREKSMLY**RL*PGHCLQTHNLGKIHELWPNLHCTRLYSL*SIPPKSNCMED*GNSEGILWRKYKRVS*L*KDHQSSSF*EDTKFA*RTKDSFWWGD**GHTLHSPNSTYRC*S*NQGDARRNFWTNSSNSACEKCR*GHKFHK*T*KASGSLCIFA*P*AHQTDD**DIQWRCHRQ*RHYALHAQLFPIWRSGFQWDGSLSRKT*F*YFFSSASLFIKKFKERRC*QTQISSQQPVKGGLGKIFSLETVQQRKTRSPVAHFPGYCSRCACQGSEQRLCLAAHRLGCEEPLCLATPSGK*GAPLPGCHHV*EV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31216 RNF103::CD8A ENSG00000239305.7::ENSG00000153563.17 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1447 FALSE NA FALSE NA RNF103 ENSG00000239305.7 protein_coding - - chr2:86603398-86623866:- chr2:86612159:- chr2:86830521-86850989:- chr2:86839282:- CD8A ENSG00000153563.17 protein_coding - - chr2:86784610-86808396:- chr2:86788560:- chr2:87011733-87035519:- chr2:87015683:- chr2:86605357,chr2:86605363 chr2:86798485,chr2:86798488 NA NA chr2:86832480,chr2:86832486 chr2:87025608,chr2:87025611 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Thioredoxin_6|191-317|7.6e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.16Mb] 19 15 19 11.49 ONLY_REF_SPLICE YES_LDAS 0.4453 GT 1.9656 AG 1.7819 ENST00000237455.5 1-482 ENST00000283635.8 626-708 chr2|-|[1]86612159-86612274[0]|[2]86620330-86620469[1]|[0]86622661-86622886[0]<==>chr2|-|[2]86785920-86785971[2]|[1]86788530-86788560[1] atgtggctgaagctttttttcttgctcctctatttcctggtcctgttcgtcctggccaggttttttgaggccattgtgtggtatgaaactggcatctttgccacccagctggtggatccggtggcgctgagcttcaagaagctgaagaccattttggagtgccgggggttgggctactcagggttgcccgagaagaaggatgtccgggagctggtggaaaagtcaggtgacttgatggagggtgagctctattctgctctcaaggaagaagaagcatccgaatcggtttctagtaccaatttcagtggtgaaatgcacttctatgagcttgtggaagacacaaaagatggcatctggctggttcaggtcatagcaaatgacagaagtcccttggtgggcaaaattcactgggagaaaatggttaaaaaggtgtcaagatttggaatacgtacaggcacatttaactgttccagtgatcccagGGAACCGAAGACGTGTTTGCAAATGTCCCCGGCCTGTGGTCAAATCGGGAGACAAGCCCAGCCTTTCGGCGAGATACGTCTAA MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPREPKTCLQMSPACGQIGRQAQPFGEIRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31217 SRD5A1::NSUN2 ENSG00000145545.12::ENSG00000037474.15 HARA SRR8615820 SRR8639180 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1448 FALSE NA FALSE NA SRD5A1 ENSG00000145545.12 protein_coding + + chr5:6633427-6674386:+ chr5:6633869:+ chr5:6633540-6674499:+ chr5:6633982:+ NSUN2 ENSG00000037474.15 protein_coding - - chr5:6599239-6633291:- chr5:6607384:- chr5:6599352-6633404:- chr5:6607497:- chr5:6634032,chr5:6634033 chr5:6607638,chr5:6607637 NA NA chr5:6634145,chr5:6634146 chr5:6607751,chr5:6607750 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];LOCAL_INVERSION:+:-:[52] 13 9 13 9 ONLY_REF_SPLICE YES_LDAS 0.3214 GT 1.8892 AG 1.9656 ENST00000510531.5 1-293 ENST00000506139.5 1219-2199 chr5|+|[0]6633577-6633869[1]<==>chr5|-|[2]6599926-6600232[2]|[1]6602461-6602500[1]|[0]6604138-6604276[0]|[2]6604605-6604685[0]|[2]6605273-6605408[2]|[1]6606820-6606912[2]|[1]6607200-6607384[0] atggcaacggcgacgggggtggcggaggagcgcctgctggccgcgctcgcctacctgcagtgcgccgtgggctgcgcggtcttcgcgcgcaatcgtcagacgaactcagtgtacggccgccacgcgctgcccagccacaggctccgagtgccggcgcgggccgcctgggtggtgcaggagctgccctcgctggccctgccgctctaccagtacgccagcgagtccgccccgcgtctccgcagcgcgcccaactgcatcctcctggccatgttcctcgtccactacgggcatcgCTTCAGGGTAAATCTGCAGAGACCAGAGAAAGCACACAGCTGAGCCCTGCAGATCTCACAGAAGGGAAACCCACAGATCCCTCTAAGCTGGAAAGTCCGTCATTCACAGGAACTGGTGACACAGAAATAGCTCATGCAACTGAGGATTTAGAGAATAATGGCAGTAAGAAAGATGGCGTGTGTGGTCCTCCTCCATCAAAGAAAATGAAGTTATTTGGATTTAAAGAAGATCCATTTGTATTTATTCCTGAAGATGACCCATTATTTCCACCTATTGAGAAATTTTATGCTTTGGATCCTTCATTCCCAAGGATGAATTTGTTAACTCGGACTACAGAAGGGAAGAAAAGGCAGCTCTACATGGTTTCTAAGGAGTTGCGGAATGTGCTGCTGAATAACAGTGAGAAGATGAAGGTTATTAACACGGGGATCAAAGTCTGGTGTAGAAATAACAGCGGTGAAGAGTTTGACTGTGCTTTCCGGCTGGCACAGGAGGGAATATATACATTGTATCCATTTATTAACTCAAGAATTATTACTGTATCAATGGAAGATGTTAAGATACTGTTGACCCAGGAAAATCCCTTTTTTAGAAAACTCAGCAGTGAGACCTACAGTCAAGCAAAGGACCTGGCAAAGGGAAGCATCGTGCTGAAGTATGAACCAGATTCTGCGAATCCAGACGCTCTGCAGTGTCCCATCGTCTTATGCGGATGGCGGGGAAAGGCCTCCATTCGAACTTTTGTGCCCAAGAATGAACGGCTTCATTATCTCAGGATGATGGGGCTGGAGGTATTGGGAGAAAAGAAGAAGGAAGGGGTTATCCTCACAAATGAGAGTGCAGCCAGCACCGGACAGCCAGACAATGACGTGACTGAGGGACAGAGAGCAGGAGAGCCCAACAGCCCAGATGCAGAAGAGGCCAACAGTCCAGACGTGACAGCAGGCTGTGACCCGGCGGGGGTCCATCCACCCCGGTGA MATATGVAEERLLAALAYLQCAVGCAVFARNRQTNSVYGRHALPSHRLRVPARAAWVVQELPSLALPLYQYASESAPRLRSAPNCILLAMFLVHYGHRFRVNLQRPEKAHS*ALQISQKGNPQIPLSWKVRHSQELVTQK*LMQLRI*RIMAVRKMACVVLLHQRK*SYLDLKKIHLYLFLKMTHYFHLLRNFMLWILHSQG*IC*LGLQKGRKGSSTWFLRSCGMCC*ITVRR*RLLTRGSKSGVEITAVKSLTVLSGWHRREYIHCIHLLTQELLLYQWKMLRYC*PRKIPFLENSAVRPTVKQRTWQREASC*SMNQILRIQTLCSVPSSYADGGERPPFELLCPRMNGFIISG*WGWRYWEKRRRKGLSSQMRVQPAPDSQTMT*LRDREQESPTAQMQKRPTVQT*QQAVTRRGSIHPG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31226 CCNE2::RMDN1 ENSG00000175305.18::ENSG00000176623.12 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1451 FALSE NA FALSE NA CCNE2 ENSG00000175305.18 protein_coding - - chr8:94879770-94896678:- chr8:94890415:- chr8:95891998-95908906:- chr8:95902643:- RMDN1 ENSG00000176623.12 protein_coding - - chr8:86468257-86514357:- chr8:86474953:- chr8:87480486-87526586:- chr8:87487182:- chr8:94888739,chr8:94888742 chr8:86476073,chr8:86476073 NA NA chr8:95900967,chr8:95900970 chr8:87488302,chr8:87488302 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cyclin_N|113-239|9.6e-47^Cyclin_C|241-361|1.6e-13^Cyclin_N|308-335|0.23 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:8.37Mb] 324 368 324 368 ONLY_REF_SPLICE YES_LDAS 7.9497 GT 1.9086 AG 1.9329 ENST00000520509.5 1-453 ENST00000517710.5 121-479 chr8|-|[2]94890415-94890550[2]|[1]94892818-94892969[0]|[2]94893891-94893944[0]|[2]94894023-94894119[2]|[1]94894208-94894221[0]<==>chr8|-|[2]86468676-86468707[1]|[0]86470218-86470410[0]|[2]86474820-86474953[1] atgtcaagacgaagtagccgtttacaagctaagcagcagccccagcccagccagacggaatccccccaagaagcccagataatccaggccaagaagaggaaaactacccaggatgtcaaaaaaagaagagaggaggtcaccaagaaacatcagtatgaaattaggaattgttggccacctgtattatctggggggatcagtccttgcattatcattgaaacacctcacaaagaaataggaacaagtgatttctccagatttacaaattacagatttaaaaatctttttattaatccttcacctttgcctgatttaagctggggatgttcaaaagaagtctggctaaacatgttaaaaaaggagagcagatatgttcatgacaaacattttgaagttctgcattctgacttggaaccacagatgaggtccatacttctagactggcttttagagTGGATCCAAACTTCTACAGCAAAAACTTACTTCTTTTAGGAAAGACATACTTGAAACTACACAACAAAAAGCTTGCTGCTTTCTGGCTAATGAAAGCCAAGGACTATCCAGCACACACAGAGGAGGATAAACAGGAGCCTGATTCCCCACGTGTCACATTGGTCCGTGACGTTTCCCCACTAAGGGTGAGACCCATTACTGAGAACAAACCCCAGGAATCCCTTACATTCTCCTTCCCGTGCAGCCCCCACCTGATTGTTCTTGTGTGGATTCCAGAGCTGACTGCTGGATTGAGATGCTTATTTCCCCACGTACATGTATATCAAAGGTTCTGTGTAGCCTCACCTAGTGCATCGTAA MSRRSSRLQAKQQPQPSQTESPQEAQIIQAKKRKTTQDVKKRREEVTKKHQYEIRNCWPPVLSGGISPCIIIETPHKEIGTSDFSRFTNYRFKNLFINPSPLPDLSWGCSKEVWLNMLKKESRYVHDKHFEVLHSDLEPQMRSILLDWLLEWIQTSTAKTYFF*ERHT*NYTTKSLLLSG**KPRTIQHTQRRINRSLIPHVSHWSVTFPH*G*DPLLRTNPRNPLHSPSRAAPT*LFLCGFQS*LLD*DAYFPTYMYIKGSV*PHLVHR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31228 VPS18::ZFYVE19 ENSG00000104142.11::ENSG00000166140.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1452 TRUE 2582 TRUE 991 VPS18 ENSG00000104142.11 protein_coding + + chr15:40894450-40903975:+ chr15:40898998:+ chr15:41186648-41196173:+ chr15:41191196:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40812699:+ chr15:41099284-41107282:+ chr15:41104897:+ chr15:40899159,chr15:40899155 chr15:40812450,chr15:40812443 NA NA chr15:41191357,chr15:41191353 chr15:41104648,chr15:41104641 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pep3_Vps18|42-109|8.5e-20 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.08Mb];LOCAL_REARRANGEMENT:+:[79346] 186 235 186 212.47 ONLY_REF_SPLICE YES_LDAS 4.5777 GT 1.9086 AG 1.7968 ENST00000558474.1 1-325 ENST00000336455.9 797-1386 chr15|+|[0]40894769-40894859[0]|[1]40895938-40896079[1]|[2]40898907-40898998[0]<==>chr15|+|[1]40812699-40812902[0]|[1]40813338-40813417[2]|[0]40813713-40813811[2]|[0]40813943-40814070[1]|[2]40814148-40814226[2] atggcgtccatcctggatgagtacgagaactcgctgtcccgctcggccgtcttgcagcccggctgccctagcgtgggcatcccccactcggggtatgtgaatgcccagctggagaaggaagtgcccatcttcacaaagcagcgcattgacttcaccccttccgagcgcattaccagtcttgtcgtctccagcaatcagctgtgcatgagcctgggcaaggatacactgctccgcattgacttgggcaaggcaaatgagcccaaccacgtggagctgggacgtaaggatgacgcaaaagttcacaagatgttccttgaccatactgCTGCCTCTCTCCAGAATGATCTCAACCAGGGTGGCCCAGGGAGCACTAATTCCAAGAGGCAGGCCAACTGGTCCTTGGAGGAGGAGAAGAGCAGACTGCTGGCTGAGGCAGCACTTGAGTTGCGGGAGGAGAACACGAGGCAGGAACGGATTCTGGCCCTGGCCAAGCGACTAGCCATGCTGCGGGGACAGGACCCCGAGAGAGTGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGCAGCTCACTGAAGAAGCTTCCCTGGATGAGGCAAGTGGCTTTAACATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGGCCCAGGATGTGGACCCCAGGCCTGAGGCTGAGGAAGAGGAGCTCCCCTGGTGCTGCATCTGCAATGAGGATGCCACCCTACGCTGCGCTGGCTGCGATGGGGACCTCTTCTGTGCCCGCTGCTTCCGAGAGGGCCATGATGCCTTTGAGCTTAAAGAGCACCAGACATCTGCCTACTCTCCTCCACGTGCAGGCCAAGAGCACTGA MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTAASLQNDLNQGGPGSTNSKRQANWSLEEEKSRLLAEAALELREENTRQERILALAKRLAMLRGQDPERVTLQDYRLPDSDDDEDEETAIQRVLQQLTEEASLDEASGFNIPAEQASRPWTQPRGAEPEAQDVDPRPEAEEEELPWCCICNEDATLRCAGCDGDLFCARCFREGHDAFELKEHQTSAYSPPRAGQEH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31231 VPS18::ZFYVE19 ENSG00000104142.11::ENSG00000166140.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1453 TRUE 2582 TRUE 991 VPS18 ENSG00000104142.11 protein_coding + + chr15:40894450-40903975:+ chr15:40898998:+ chr15:41186648-41196173:+ chr15:41191196:+ ZFYVE19 ENSG00000166140.17 protein_coding + + chr15:40807086-40815084:+ chr15:40813338:+ chr15:41099284-41107282:+ chr15:41105536:+ chr15:40899159,chr15:40899155 chr15:40812450,chr15:40812443 NA NA chr15:41191357,chr15:41191353 chr15:41104648,chr15:41104641 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pep3_Vps18|42-109|8.5e-20 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.08Mb];LOCAL_REARRANGEMENT:+:[79346] 85 106 85 22.52 ONLY_REF_SPLICE YES_LDAS 1.2352 GT 1.9086 AG 1.9219 ENST00000558474.1 1-325 ENST00000336455.9 1001-1386 chr15|+|[0]40894769-40894859[0]|[1]40895938-40896079[1]|[2]40898907-40898998[0]<==>chr15|+|[1]40813338-40813417[2]|[0]40813713-40813811[2]|[0]40813943-40814070[1]|[2]40814148-40814226[2] atggcgtccatcctggatgagtacgagaactcgctgtcccgctcggccgtcttgcagcccggctgccctagcgtgggcatcccccactcggggtatgtgaatgcccagctggagaaggaagtgcccatcttcacaaagcagcgcattgacttcaccccttccgagcgcattaccagtcttgtcgtctccagcaatcagctgtgcatgagcctgggcaaggatacactgctccgcattgacttgggcaaggcaaatgagcccaaccacgtggagctgggacgtaaggatgacgcaaaagttcacaagatgttccttgaccatactgTGACCCTCCAGGACTATCGCCTCCCAGACAGTGATGACGACGAGGATGAGGAGACAGCCATCCAAAGAGTCCTGCAGCAGCTCACTGAAGAAGCTTCCCTGGATGAGGCAAGTGGCTTTAACATCCCTGCAGAGCAGGCTTCTCGACCCTGGACGCAACCCCGCGGGGCAGAGCCTGAGGCCCAGGATGTGGACCCCAGGCCTGAGGCTGAGGAAGAGGAGCTCCCCTGGTGCTGCATCTGCAATGAGGATGCCACCCTACGCTGCGCTGGCTGCGATGGGGACCTCTTCTGTGCCCGCTGCTTCCGAGAGGGCCATGATGCCTTTGAGCTTAAAGAGCACCAGACATCTGCCTACTCTCCTCCACGTGCAGGCCAAGAGCACTGA MASILDEYENSLSRSAVLQPGCPSVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVELGRKDDAKVHKMFLDHTVTLQDYRLPDSDDDEDEETAIQRVLQQLTEEASLDEASGFNIPAEQASRPWTQPRGAEPEAQDVDPRPEAEEEELPWCCICNEDATLRCAGCDGDLFCARCFREGHDAFELKEHQTSAYSPPRAGQEH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31232 SYT7::CYB5R2 ENSG00000011347.10::ENSG00000166394.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SYT7 ENSG00000011347.10 protein_coding - - chr11:61513714-61581148:- chr11:61580790:- chr11:61281186-61348620:- chr11:61348262:- CYB5R2 ENSG00000166394.15 protein_coding - - chr11:7665100-7677222:- chr11:7674493:- chr11:7686331-7698453:- chr11:7695724:- chr11:61567678,chr11:61567686 chr11:7676394,chr11:7676399 NA NA chr11:61335150,chr11:61335158 chr11:7697625,chr11:7697630 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:53.84Mb] 66 6 66 6 ONLY_REF_SPLICE YES_LDAS 0.8271 GT 1.5219 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31233 SLCO4A1::TCEA2 ENSG00000101187.16::ENSG00000171703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLCO4A1 ENSG00000101187.16 protein_coding + + chr20:62642503-62685785:+ chr20:62658767:+ chr20:61273855-61317137:+ chr20:61290119:+ TCEA2 ENSG00000171703.17 protein_coding + + chr20:64049836-64072347:+ chr20:64062430:+ chr20:62681189-62703700:+ chr20:62693783:+ chr20:62660246,chr20:62660245 chr20:64050288,chr20:64050282 NA NA chr20:61291598,chr20:61291597 chr20:62681641,chr20:62681635 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.36Mb] 56 26 56 26 ONLY_REF_SPLICE YES_LDAS 0.942 GT 1.7465 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31234 VAV2::TRUB2 ENSG00000160293.17::ENSG00000167112.10 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1455 FALSE NA FALSE NA VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133939103:- chr9:136627016-136857726:- chr9:136804225:- TRUB2 ENSG00000167112.10 protein_coding - - chr9:128305159-128322447:- chr9:128313889:- chr9:131067438-131084726:- chr9:131076168:- chr9:133867684,chr9:133867688 chr9:128316321,chr9:128316322 NA NA chr9:136732806,chr9:136732810 chr9:131078600,chr9:131078601 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH|2-118|3.3e-24^CAMSAP_CH|19-103|3.6e-29^CDC24|32-115|2.5e-05^C1_2|157-165|6.9^RhoGEF-PARTIAL|198-321~|3e-43^SH3_2|208-225|0.15^Molydop_binding|210-246|0.37^zf-RING_16|274-289|0.54^PLU-1-PARTIAL|286-321~|1e-05 none ["VAV2:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:5.44Mb] 48 76 48 76 ONLY_REF_SPLICE YES_LDAS 1.4245 GT 1.9086 AG 1.9899 ENST00000371851.1 1-321 ENST00000372890.6 379-996 chr9|-|[2]133939103-133939219[0]|[2]133992075-133992278[0]<==>chr9|-|[2]128309550-128309875[1]|[0]128310887-128311023[2]|[1]128311529-128311601[1]|[0]128313808-128313889[0] atggagcagtggcggcagtgcggccgctggctcatcgattgcaaggtcctgccgcccaaccaccgggtggtgtggccctcggccgtggtcttcgacctggcgcaggcgctgcgcgacggggtccttctgtgccagctgctgcacaacctctcccccggctccatcgacctcaaggacatcaacttccggccgcagatgtcccagtttctgtgtttgaagaacatacgcaccttcctgaaagtctgccacgataaatttggattaaggaacagcgagctgtttgacccctttgacctcttcgatgtgcgagactttggaaagGATTACACAGTGCGTGGCCTCCTGGGCAAAGCTACAGATGACTTCCGTGAGGACGGGAGGCTGGTAGAGAAGACAACCTATGACCACGTGACCAGAGAGAAGCTGGACCGCATTCTGGCCGTTATCCAAGGCTCCCATCAGAAGGCCCTGGTGATGTACTCCAACCTCGACCTGAAGACCCAGGAGGCCTATGAGATGGCCGTGAGAGGCCTGATCCGGCCCATGAACAAGTCCCCGATGCTGATAACTGGCATCCGATGCCTCTACTTTGCACCTCCGGAATTCCTCTTAGAGGTGCAGTGCATGCATGAGACGCAGAAAGAGCTGCGGAAGTTGGTTCATGAAATCGGCCTGGAACTAAAGACCACTGCTGTCTGCACCCAAGTGCGGCGCACGCGCGACGGCTTCTTCACGCTAGACAGTGCCCTCCTGAGGACCCAGTGGGACCTAACCAACATCCAGGATGCTATCCGGGCTGCTACCCCTCAGGTAGCTGCAGAGCTGGAGAAGAGCTTGAGCCCGGGGCTGGACACCAAGCAGCTCCCCAGTCCGGGATGGTCCTGGGACTCCCAGGGCCCGAGCTCTACCTTGGGGCTGGAGAGGGGTGCGGGGCAGTGA MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQFLCLKNIRTFLKVCHDKFGLRNSELFDPFDLFDVRDFGKDYTVRGLLGKATDDFREDGRLVEKTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLITGIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLDSALLRTQWDLTNIQDAIRAATPQVAAELEKSLSPGLDTKQLPSPGWSWDSQGPSSTLGLERGAGQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31236 STMN3::OSBPL2 ENSG00000197457.10::ENSG00000130703.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1460 FALSE NA FALSE NA STMN3 ENSG00000197457.10 protein_coding - - chr20:63639705-63657682:- chr20:63653327:- chr20:62271058-62289035:- chr20:62284680:- OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62289207:+ chr20:60806978-60871269:+ chr20:60864263:+ chr20:63644877 chr20:62288376 NA NA chr20:62276230 chr20:60863432 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Stathmin|5-14|2.5 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.34Mb] 38 4 38 3.66 ONLY_REF_SPLICE YES_LDAS 0.4785 GT 1.8295 AG 1.7819 ENST00000370053.3 1-19 ENST00000642714.1 983-1318 chr20|-|[0]63653327-63653345[0]<==>chr20|+|[0]62289207-62289330[0]|[1]62291245-62291344[1]|[2]62291703-62291793[2]|[0]62293785-62293805[2] atggccagcaccatttccgATGTATAATTTCACCAGTTTCACTGTGAGCCTCAACGAGCTGGAGACAGGCATGGAGAAGACCCTGCCACCCACGGACTGCCGCCTGCGCCCTGACATCCGCGGCATGGAGAATGGCAACATGGAATGTGTGCCCAGTCCTTCACAGAAGCCACATGGCAGTTACCCGGGAAGGTCAAGGCTAAAGGGAGCTCGTCTTTGGGAGATGGGCTCTGAGTTGCACAGATCTGGCCAGCCAGGAGAAGGAGCGGCTGGAGGAGAAGCAGAGAGAAGCACGGAGGGAGCGGGCCAAGGAGGAGGCAGAGTGGCAGACGAGGTGGTTCTACCCAGGCAATAA MASTISDV*FHQFHCEPQRAGDRHGEDPATHGLPPAP*HPRHGEWQHGMCAQSFTEATWQLPGKVKAKGSSSLGDGL*VAQIWPARRRSGWRRSREKHGGSGPRRRQSGRRGGSTQAI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31239 NDUFAF6::NCOR1 ENSG00000156170.14::ENSG00000141027.23 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1459 FALSE NA FALSE NA NDUFAF6 ENSG00000156170.14 protein_coding + + chr8:94895533-95116455:+ chr8:95075752:+ chr8:95907761-96128683:+ chr8:96087980:+ NCOR1 ENSG00000141027.23 protein_coding - - chr17:16029065-16218185:- chr17:16075702:- chr17:15932379-16121499:- chr17:15979016:- chr8:95080464,chr8:95080494,chr8:95080650,chr8:95080670,chr8:95080696,chr8:95080116,chr8:95080157,chr8:95080304,chr8:95080345,chr8:95080385,chr8:95080426 chr17:16077913,chr17:16077914,chr17:16077913,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077902,chr17:16077913 NA NA chr8:96092692,chr8:96092722,chr8:96092878,chr8:96092898,chr8:96092924,chr8:96092344,chr8:96092385,chr8:96092532,chr8:96092573,chr8:96092613,chr8:96092654 chr17:15981227,chr17:15981228,chr17:15981227,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981216,chr17:15981227 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCOR1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 27 19 27 18.23 ONLY_REF_SPLICE YES_LDAS 0.5196 GT 1.8892 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3150a chr8:95072914-95072993:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor corepressor 1 1 Yes breast epithelial TSG missense, frameshift, nonsense, other 31241 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1456 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127989162:+ chr8:128806772-129199347:+ chr8:129001408:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:46.06Mb] 25 21 25 11.93 ONLY_REF_SPLICE YES_LDAS 0.4243 GT 1.9086 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31242 LDLRAD3::SYT9 ENSG00000179241.13::ENSG00000170743.17 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1465 FALSE NA FALSE NA LDLRAD3 ENSG00000179241.13 protein_coding + + chr11:35943981-36232136:+ chr11:35944144:+ chr11:35965531-36253686:+ chr11:35965694:+ SYT9 ENSG00000170743.17 protein_coding + + chr11:7238778-7469043:+ chr11:7303039:+ chr11:7260009-7490274:+ chr11:7324270:+ chr11:36022899,chr11:36022900 chr11:7245056,chr11:7245054 NA NA chr11:36044449,chr11:36044450 chr11:7266287,chr11:7266285 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ldl_recept_a-PARTIAL|21-46~|2.8e-14^PRKCSH-like-PARTIAL|45-46~|0.0005 C2|236-325|2.4e-33^NT-C2|236-334|7.6e-05^PI3K_C2|274-322|0.00058^PI3K_C2|362-375|1.1^C2|367-472|8.3e-31^NT-C2|369-410|0.32^PI3K_C2|389-448|0.00014 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:28.47Mb] 24 1 24 1 ONLY_REF_SPLICE YES_LDAS 0.2872 GT 1.6895 AG 1.9899 ENST00000528989.5 1-46 ENST00000318881.11 146-1476 chr11|+|[0]35944099-35944144[0]<==>chr11|+|[1]7303039-7303390[1]|[2]7313395-7313941[2]|[0]7416042-7416162[0]|[1]7417957-7418128[1]|[2]7420506-7420635[2]|[0]7466792-7466800[2] atgtggctgctggggccgctgtgcctgctgctgagcagcgccgcggATATCTCAGTGAGCCTGCTGACCCTTGTGGTCACTGCCTGTGGTCTCGCTCTCTTTGGCGTGTCTCTCTTCGTATCTTGGAAACTCTGCTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAAGACAACAACCAGGAGCCCCTTAACTACATGGACACAGAGACCAATGAGCAGGAGAACAGTGAGGACTTCCTAGATCCTCCCACGCCCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGACATTCCCCTCTCCACCCAGACGGGGATCCAGGAGAACTGTGCCCATGGCGTCCGCGTGCAGCGCCAAGTCACAGAGCCAACCTCGTCGGCCCGGCATAATTCAATCCGAAGACAACTCAACTTGTCAAACCCGGACTTCAATATCCAGCAGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAAACCAGAGTTATATAAGCAGAGGTCATTGGATAATGATGACGGGAGACGGAGTAACAGCAAGGCTTGTGGGAAACTGAACTTCATTTTAAAATATGACTGTGACTTAGAGCAGCTCATAGTGAAGATTCACAAAGCTGTCAATTTGCCCGCCAAGGACTTTTCTGGGACTTCAGATCCTTATGTCAAGATCTATTTGCTTCCTGATCGGAAAACAAAACACCAGACTAAAGTTCACAGAAAGACCCTGAACCCTGTGTTTGATGAAGTGTTTTTATTTCCGGTTCCCTACAATGACCTTGAAGCACGGAAGCTTCACTTCTCTGTGTACGACTTTGACAGGTTCTCTCGTCATGACTTAATCGGCCAAGTGGTGGTGGATCACTTCCTAGACTTGGCTGATTTCCCCAGGGAGTGCATCCTTTGGAAGGATATCGAATATGTCACCAATGACAACGTGGATCTGGGAGAGCTGATGTTTTCCCTGTGCTATCTTCCAACGGCTGGCAGGCTGACCATTACCATTATAAAAGCAAGGAATTTAAAGGCAATGGACATAACAGGAGCATCAGATCCCTATGTGAAAGTCTCGCTGATGTGTGATGGCAGACGACTGAAGAAGAGGAAAACATCCACCAAGAGGAACACCTTGAATCCTGTTTACAACGAAGCCATAGTCTTTGATGTCCCTCCCGAGAACATTGACCAAATCCACTTGTCCATAGCAGTCATGGACTATGACCGTGTAGGTCACAATGAGATCATCGGCGTGTGTCAAGTAGGCAACGAGGCTGAGAGGCTGGGCAGAGACCACTGGAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACACTGGCATTCCCTGGTGGAGAAACGATGA MWLLGPLCLLLSSAADISVSLLTLVVTACGLALFGVSLFVSWKLCWVPWRERGLPSGSKDNNQEPLNYMDTETNEQENSEDFLDPPTPCPDSSMKISHTSPDIPLSTQTGIQENCAHGVRVQRQVTEPTSSARHNSIRRQLNLSNPDFNIQQLQKQEQLTGIGRIKPELYKQRSLDNDDGRRSNSKACGKLNFILKYDCDLEQLIVKIHKAVNLPAKDFSGTSDPYVKIYLLPDRKTKHQTKVHRKTLNPVFDEVFLFPVPYNDLEARKLHFSVYDFDRFSRHDLIGQVVVDHFLDLADFPRECILWKDIEYVTNDNVDLGELMFSLCYLPTAGRLTITIIKARNLKAMDITGASDPYVKVSLMCDGRRLKKRKTSTKRNTLNPVYNEAIVFDVPPENIDQIHLSIAVMDYDRVGHNEIIGVCQVGNEAERLGRDHWSEMLSYPRKPIAHWHSLVEKR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31244 ERBB2::CHMP4C ENSG00000141736.14::ENSG00000164695.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1474 FALSE NA FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39688800:+ chr17:37844167-37886679:+ chr17:37845053:+ CHMP4C ENSG00000164695.5 protein_coding + + chr8:81732448-81759515:+ chr8:81753064:+ chr8:82644683-82671750:+ chr8:82665299:+ chr17:39691553,chr17:39691554 chr8:81732720,chr8:81732715 NA NA chr17:37847806,chr17:37847807 chr8:82644955,chr8:82644950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB2:OncomapV4_panel","ERBB2:OncocartaV1_panel","ERBB2:ArcherDX_panel","ERBB2:Oncogene","ERBB2:FoundationOne_panel"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr8] 17 8 17 8 ONLY_REF_SPLICE YES_LDAS 0.2872 GT 1.8062 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 31245 ZNF79::RALGPS1 ENSG00000196152.10::ENSG00000136828.19 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1461 TRUE 2591 TRUE 998 ZNF79 ENSG00000196152.10 protein_coding + + chr9:127424374-127445372:+ chr9:127428920:+ chr9:130186653-130207651:+ chr9:130191199:+ RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:127034431:+ chr9:129677053-129985445:+ chr9:129796710:+ chr9:127434458,chr9:127434456 chr9:127016504,chr9:127016499 NA NA chr9:130196737,chr9:130196735 chr9:129778783,chr9:129778778 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB|40-78|0.00016^zf-trcl|44-54|8.4 RasGEF-PARTIAL|~217-219|1.8e-57^RasGEF|223-280|0.034^PH|433-543|2.2e-16 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.20Mb] 17 21 17 13.22 ONLY_REF_SPLICE YES_LDAS 0.3472 GT 1.7056 AG 1.9899 ENST00000342483.5 1-105 ENST00000259351.10 217-1674 chr9|+|[0]127424788-127424803[0]|[1]127428832-127428920[2]<==>chr9|+|[0]127034431-127034514[2]|[0]127050043-127050132[2]|[0]127052847-127052939[2]|[0]127069230-127069356[0]|[1]127166069-127166206[0]|[1]127168679-127168772[1]|[2]127174715-127174782[0]|[1]127195091-127195217[1]|[2]127196474-127196631[0]|[1]127199015-127199066[1]|[2]127212131-127212236[2]|[0]127212627-127212719[2]|[0]127212944-127213049[0]|[1]127214751-127214842[2]|[0]127218740-127218769[2] atgctggaggaaggagtactgccttccccaggccctgcccttccccaagaggaaaacacaggagaggaaggaatggctgctggtctcctcacagctgggccccggGAACTAGCCAGCTGTGGATGGAGTAAGAAGGAGAAACACAGTCTTGCCCCTAACGTTGTGGCCTTTACCCGGAGGTTTAACCAGGTCAGTTTTTGGGTTGTACGAGAAATTCTAACAGCACAGACTTTAAAAATAAGGGCAGAAATCCTCAGCCATTTTGTGAAAATAGCCAAGAAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTATCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCTCTTTTAAATCGAAAAGACAAGACTACCTTTGAGAAATTGGACTACCTGATGTCGAAAGAAGATAATTACAAGCGGACACGGGAATATATCCGAAGCCTGAAGATGGTTCCAAGTATTCCCTATCTAGGAATCTATCTTCTGGATTTAATCTACATTGATTCTGCATATCCTGCCTCAGGCAGTATCATGGAAAATGAACAAAGATCCAATCAGATGAACAATATTCTTCGAATAATTGCTGATTTACAAGTTTCCTGCAGCTATGATCACCTCACCACCCTGCCCCATGTGCAGAAGTACCTGAAGTCCGTACGCTACATTGAAGAGCTCCAGAAGTTTGTGGAAGACGACAACTACAAACTGTCGCTCAGAATCGAACCAGGAAGCAGCTCTCCAAGACTAGTCTCTTCCAAGGAAGATCTTGCAGGTCCCTCTGCTGGCTCCGGTTCTGCGAGGTTCAGCCGGAGGCCCACCTGTCCTGACACATCTGTTGCTGGCAGCCTCCCCACACCTCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAATATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGTGCGACATTCCCATCGGAGAAAGCAAGGCACCTACTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGGCTCTGACCTCCTCCTCTGCTGTCACCAATGGACTCTCCCTAGGCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAGATGTCTTCAGGGCTGGAAAGCCCCACCGGCCCGTGCATCTGTTCTCTGGGGAACTCCGCAGCTGTGCCCACCATGGAGGGGCCTCTGAGAAGAAAAACCCTGCTCAAGGAAGGGCGGAAGCCTGCGCTGTCCTCGTGGACCAGGTACTGGGTCATACTCTCAGGATCCACCCTCCTGTACTACGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACACTATAAATCCACACCTGGCAAAAAGGTTTCCATCGTGGGCTGGATGGTGCAGCTGCCCGATGACCCCGAGCACCCAGATATCTTCCAGCTGAACAACCCTGACAAAGGCAATGTTTACAAGTTTCAGACTGGTTCCCGATTTCATGCAATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCTCAGGTACCTGCAAACCTTATGTCATTTGAGTAA MLEEGVLPSPGPALPQEENTGEEGMAAGLLTAGPRELASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPGSSSPRLVSSKEDLAGPSAGSGSARFSRRPTCPDTSVAGSLPTPPVPRHRKSHSLGNNMMCQLSVVESKSATFPSEKARHLLDDSVLESRSPRRGLALTSSSAVTNGLSLGSSESSEFSEEMSSGLESPTGPCICSLGNSAAVPTMEGPLRRKTLLKEGRKPALSSWTRYWVILSGSTLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSNRPQVPANLMSFE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31249 VPS33A::CLIP1 ENSG00000139719.11::ENSG00000130779.22 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1468 FALSE NA FALSE NA VPS33A ENSG00000139719.11 protein_coding - - chr12:122229564-122266494:- chr12:122263572:- chr12:122714111-122751041:- chr12:122748119:- CLIP1 ENSG00000130779.22 protein_coding - - chr12:122271432-122422669:- chr12:122274162:- chr12:122755979-122907216:- chr12:122758709:- chr12:122261789,chr12:122261819 chr12:122275401,chr12:122275428 NA NA chr12:122746336,chr12:122746366 chr12:122759948,chr12:122759975 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Sec1-PARTIAL|34-296~|1.6e-126^Pectinesterase|158-210|1.7e-05 none ["DepMap2023"];INTRACHROMOSOMAL[chr12:0.00Mb];LOCAL_REARRANGEMENT:-:[4911] 13 8 13 8 ONLY_REF_SPLICE YES_LDAS 0.2412 GT 1.9656 AG 1.6895 ENST00000267199.9 1-296 ENST00000358808.6 3934-4284 chr12|-|[1]122263572-122263699[0]|[2]122264134-122264199[0]|[2]122266307-122266408[0]<==>chr12|-|[2]122272875-122273100[2]|[1]122274038-122274162[0] atggcggctcatctgtcctacggccgagtgaacctaaacgtgttgcgcgaggcggtgcgtcgcgagctgcgcgagttcctggacaagtgcgcaggaagcaaggcaatagtttgggatgaatacctaactggaccctttggcctgattgcacagtattcactattgaaggaacatgaagtggaaaaaatgttcacacttaaaggaaatcgtttgccggcagctgatgtgaagaatataattttttttgtcagacccaggctagagttgatggatataatcgctgaaaacgtgctcagATTGATTTCCTAAATTCAGTAATAGTGGACCTTCAAAGGAAGAATCAAGACCTCAAGATGAAGGTGGAGATGATGTCAGAAGCAGCCCTGAATGGGAACGGGGATGACCTAAACAATTATGACAGTGATGATCAGGAGAAACAGTCCAAGAAGAAACCTCGCCTCTTCTGTGACATTTGTGACTGCTTTGATCTCCACGACACAGAGGATTGTCCTACCCAGGCACAGATGTCAGAGGACCCTCCCCATTCCACACACCATGGCAGTCGGGGTGAGGAACGCCCATACTGTGAAATCTGTGAGATGTTTGGACACTGGGCCACCAACTGCAATGACGACGAAACCTTCTGA MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLRLIS*IQ**WTFKGRIKTSR*RWR*CQKQP*MGTGMT*TIMTVMIRRNSPRRNLASSVTFVTALISTTQRIVLPRHRCQRTLPIPHTMAVGVRNAHTVKSVRCLDTGPPTAMTTKPS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CAP-GLY domain containing linker protein 1 1 Spitzoid tumour epithelial fusion translocation 31252 TUSC2::FAM98A ENSG00000114383.10::ENSG00000119812.20 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1467 FALSE NA FALSE NA TUSC2 ENSG00000114383.10 protein_coding - - chr3:50320027-50328251:- chr3:50327954:- chr3:50357458-50365682:- chr3:50365385:- FAM98A ENSG00000119812.20 protein_coding - - chr2:33532744-33599347:- chr2:33567204:- chr2:33757811-33824414:- chr2:33792271:- chr3:50327684,chr3:50327690 chr2:33583470,chr2:33583473 NA NA chr3:50365115,chr3:50365121 chr2:33808537,chr2:33808540 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TUSC2|1-50|1.1e-09 none INTERCHROMOSOMAL[chr3--chr2] 12 8 12 5.33 ONLY_REF_SPLICE YES_LDAS 0.1991 GT 1.8323 AG 1.9329 ENST00000421918.1 1-146 ENST00000437680.2 1087-1152 chr3|-|[1]50327954-50328099[0]<==>chr2|-|[2]33567139-33567204[0] atgggcgccagcgggtccaaagctcggggcctgtggcccttcgcctcggcggccggaggcggcggctcagaggcagcaggagctgagcaagctttggtgcggcctcggggccgagctgtgccccccttcgtattcacgcgccgcggACAGTGTGTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTACAATCATAGCTCGCTGCAGCCTTGA MGASGSKARGLWPFASAAGGGGSEAAGAEQALVRPRGRAVPPFVFTRRGQCVALLPRLECSGTIIARCSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31253 CDK12::STARD3 ENSG00000167258.16::ENSG00000131748.16 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1475 FALSE NA FALSE NA CDK12 ENSG00000167258.16 protein_coding + + chr17:39461486-39567559:+ chr17:39551142:+ chr17:37617739-37723812:+ chr17:37707395:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39653481:+ chr17:37793343-37820454:+ chr17:37809734:+ chr17:39554202,chr17:39554202 chr17:39645187,chr17:39645184 NA NA chr17:37710455,chr17:37710455 chr17:37801440,chr17:37801437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDK12:ArcherDX_panel","CDK12:FoundationOne_panel"];["STARD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.07Mb];NEIGHBORS[72158] 12 9 12 9 ONLY_REF_SPLICE YES_LDAS 0.2413 GT 1.231 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 12 CMGC CDK CRK7 Q9NYV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cyclin-dependent kinase 12 1 Yes serous ovarian epithelial TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 31257 ENSG00000254682::LRCH1 ENSG00000254682.2::ENSG00000136141.15 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1470 FALSE NA FALSE NA ENSG00000254682 ENSG00000254682.2 lncRNA + + chr11:71448562-71452157:+ chr11:71448885:+ chr11:71159608-71163203:+ chr11:71159931:+ LRCH1 ENSG00000136141.15 protein_coding + + chr13:46553168-46753040:+ chr13:46650201:+ chr13:47127303-47327175:+ chr13:47224336:+ chr11:71449553,chr11:71449551 chr13:46648660,chr13:46648655 NA NA chr11:71160599,chr11:71160597 chr13:47222795,chr13:47222790 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 7 9 7 ONLY_REF_SPLICE YES_LDAS 0.1838 GT 1.8892 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31259 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1457 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127983904:+ chr8:128806772-129199347:+ chr8:128996150:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:46.06Mb] 8 27 8 9.27 ONLY_REF_SPLICE YES_LDAS 0.1984 GT 1.9086 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31261 ZNF79::RALGPS1 ENSG00000196152.10::ENSG00000136828.19 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2591 TRUE 998 ZNF79 ENSG00000196152.10 protein_coding + + chr9:127424374-127445372:+ chr9:127428920:+ chr9:130186653-130207651:+ chr9:130191199:+ RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:127016660:+ chr9:129677053-129985445:+ chr9:129778939:+ chr9:127434458,chr9:127434456 chr9:127016504,chr9:127016499 NA NA chr9:130196737,chr9:130196735 chr9:129778783,chr9:129778778 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.20Mb] 8 23 8 9.78 ONLY_REF_SPLICE YES_LDAS 0.2043 GT 1.7056 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31266 ERBB2::PCAT1 ENSG00000141736.14::ENSG00000253438.5 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39717480:+ chr17:37844167-37886679:+ chr17:37873733:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127292812:+ chr8:127568568-128431295:+ chr8:128305057:+ chr17:39721408,chr17:39721405 chr8:127251916,chr8:127251910 NA NA chr17:37877661,chr17:37877658 chr8:128264161,chr8:128264155 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB2:OncomapV4_panel","ERBB2:OncocartaV1_panel","ERBB2:ArcherDX_panel","ERBB2:Oncogene","ERBB2:FoundationOne_panel"];INTERCHROMOSOMAL[chr17--chr8] 5 14 5 6.45 ONLY_REF_SPLICE YES_LDAS 0.1315 GT 1.6402 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 31269 ZFAND1::PVT1 ENSG00000104231.11::ENSG00000249859.14 HCC1419 SRR8615821 SRR8639182 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1458 TRUE 2588 TRUE 995 ZFAND1 ENSG00000104231.11 protein_coding - - chr8:81701334-81732903:- chr8:81732199:- chr8:82613569-82645138:- chr8:82644434:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127982360:+ chr8:128806772-129199347:+ chr8:128994606:+ chr8:81730333,chr8:81730335 chr8:127974912,chr8:127974906 NA NA chr8:82642568,chr8:82642570 chr8:128987158,chr8:128987152 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:46.06Mb] 4 28 4 6.8 ONLY_REF_SPLICE YES_LDAS 0.1241 GT 1.9086 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-1206,hsa-mir-1207,hsa-mir-1208 chr8:128008898-128008956:+,chr8:128049152-128049238:+,chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31272 FHOD3::MOCOS ENSG00000134775.16::ENSG00000075643.6 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1477 FALSE NA FALSE NA FHOD3 ENSG00000134775.16 protein_coding + + chr18:36297713-36780220:+ chr18:36512543:+ chr18:33877676-34360183:+ chr18:34092506:+ MOCOS ENSG00000075643.6 protein_coding + + chr18:36187497-36272157:+ chr18:36256968:+ chr18:33767460-33852120:+ chr18:33836931:+ chr18:36526621,chr18:36526621 chr18:36255414,chr18:36255411 NA NA chr18:34106584,chr18:34106584 chr18:33835377,chr18:33835374 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Formin_GBD_N|6-123|1.2e-55^Drf_GBD|140-217|1.4e-05 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.03Mb];LOCAL_REARRANGEMENT:+:[25557] 118 44 118 44 ONLY_REF_SPLICE YES_LDAS 1.6843 GT 1.9656 AG 1.9329 ENST00000590592.6 1-511 ENST00000261326.6 2165-2667 chr18|+|[0]36297836-36298000[2]|[0]36355539-36355645[1]|[2]36372680-36372744[0]|[1]36501932-36501999[2]|[0]36512438-36512543[0]<==>chr18|+|[1]36256968-36257073[1]|[2]36260037-36260175[2]|[0]36266749-36266853[2]|[0]36268533-36268685[2] atggccacgctggcttgccgggtgcagttcttggacgacacggaccctttcaacagcaccaacttccccgagcccagccggccgccgctgttcacgttccgcgaggacctcgcgctcggcacccagctggcgggggtccataggctgctgcaggcgccgcacaagctggatgactgtactctgcagctctctcacaatggcgcctacctggatttggaggccaccctggcagagcagcgggatgagttggaaggcttccaggatgacgccgggcggggcaagaagcacagcatcatcctaaggacgcagctgtctgtgagggtccatgcctgcatcgaaaaactatacaactccagcggacgagatttgagaagggccctcttctccctgaagcagatatttcaggatgacaaggatttggtgcatgaatttgtagtggctgaaggtctgacatgtttgatcaaggtgggagctgaggctgatcagaactatcagaactacatcttaagggATCAACTTCCTGGTACAATGGCCACCCTTTCTCTGGTGAATGAGGCACAGTATCTGCTGATCAACACATCCAGTATTTTGGAACTTCACCGGCAACTAAACACCAGTGATGAGAATGGAAAGGAGGAATTATTCTCACTGAAGGATCTCAGCTTGCGTTTTCGTGCCAATATTATTATCAATGGAAAAAGGGCTTTTGAAGAAGAGAAATGGGATGAGATTTCAATTGGCTCTTTGCGTTTCCAGGTTTTGGGGCCTTGTCACAGATGCCAGATGATTTGCATCGACCAGCAAACTGGGCAACGAAACCAGCATGTTTTCCAAAAACTTTCTGAGAGTCGTGAAACAAAGGTGAACTTTGGCATGTACCTGATGCATGCATCATTGGATTTATCCTCCCCATGTTTCCTGTCTGTAGGATCTCAGGTGCTCCCTGTGTTGAAAGAGAATGTGGAAGGTCATGATTTACCTGCATCTGAGAAACACCAGGATGTTACCTCCTAA MATLACRVQFLDDTDPFNSTNFPEPSRPPLFTFREDLALGTQLAGVHRLLQAPHKLDDCTLQLSHNGAYLDLEATLAEQRDELEGFQDDAGRGKKHSIILRTQLSVRVHACIEKLYNSSGRDLRRALFSLKQIFQDDKDLVHEFVVAEGLTCLIKVGAEADQNYQNYILRDQLPGTMATLSLVNEAQYLLINTSSILELHRQLNTSDENGKEELFSLKDLSLRFRANIIINGKRAFEEEKWDEISIGSLRFQVLGPCHRCQMICIDQQTGQRNQHVFQKLSESRETKVNFGMYLMHASLDLSSPCFLSVGSQVLPVLKENVEGHDLPASEKHQDVTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma HEAD_AND_NECK,HEAD_AND_NECK,HEAD_AND_NECK no_match 33952707,33877963,33877963|33877963 FALSE,FALSE,FALSE|FALSE 33836931,33828885,33836931|33846712 TRUE,FALSE,TRUE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31273 NHSL1::MAP7 ENSG00000135540.12::ENSG00000135525.19 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1483 TRUE 2632 TRUE 1013 NHSL1 ENSG00000135540.12 protein_coding - - chr6:138422043-138692571:- chr6:138447001:- chr6:138743180-139013708:- chr6:138768138:- MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136421799:- chr6:136663419-136871957:- chr6:136742937:- chr6:138440700,chr6:138440702 chr6:136459440,chr6:136459439 NA NA chr6:138761837,chr6:138761839 chr6:136780578,chr6:136780577 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NHS|69-226|7e-89^NHS-PARTIAL|226-676~|0 MAP7-PARTIAL|~134-180|4.1e-05^MAP7|412-423|0.95^MAP7|498-647|1.3e-43 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.87Mb] 73 44 73 32.78 ONLY_REF_SPLICE YES_LDAS 1.0998 GT 1.7819 AG 1.6895 ENST00000427025.6 1-676 ENST00000617204.4 134-2340 chr6|-|[0]138447001-138447193[0]|[2]138473306-138473433[1]|[0]138496219-138496371[1]|[0]138571710-138571911[0]<==>chr6|-|[2]136344228-136344238[1]|[0]136345856-136346079[2]|[1]136356692-136356794[1]|[0]136359820-136359877[0]|[2]136359981-136360031[0]|[2]136360697-136360798[0]|[2]136361005-136361179[2]|[1]136362450-136362702[1]|[0]136365735-136366018[2]|[1]136366327-136366439[0]|[2]136372501-136372649[1]|[0]136377755-136377868[1]|[0]136383671-136383781[1]|[0]136388393-136388510[0]|[2]136389354-136389517[1]|[0]136411620-136411697[1]|[0]136421701-136421799[1] atgaaaaaggaaggctcttcaggttccttcagactccagccgaatacaggttctctctcacgtgctgtaagttggataaatttctcctccttgtccaggcagacaaagaggctgtttcgcagtgatggagagctctcggtttgtgggcagcaggtggaagtggatgacgaaaactggatatacagagcccagcccagaaaagcggtttccaacctagatgaggaaagccgatggacagtccactacactgccccgtggcaccagcaggagaatgtgttccttcccaccacaagacccccctgtgttgaggacctgcaccgccaagccaagctcaacctcaaatcagtactgagggaatgcgataagttgcggcatgatggctaccgcagttctcagtactactctcagggacccacctttgcggccaacgccagcccattctgtgatgattaccaagatgaagatgaagaaacagatcaaaagtgttctctgtcttcatcagaagaagaaagatttatttccatcaggagacctaaaacaccagcctcaagtgacttctccgaccttaatactcagacgaactggaccaagtcgcttccactgccaacaccagaagagaagatgcgacagcaagcccaaacagtccaggctgacgtggtgcctattaacataactgCACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAGACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCCCGGGAGCGACGTGAGGAACGGGAGAAACAGCTAGCTGCAAGAGAAATAGTGTGGTTAGAAAGAGAAGAGCGAGCCAGGCAGCACTACGAGAAGCACCTGGAAGAGCGGAAGAAGAGGTTGGAGGAGCAGAGGCAGAAGGAGGAGCGGAGGAGGGCTGCTGTGGAGGAGAAGCGGAGGCAGAGACTTGAGGAGGACAAAGAACGCCACGAAGCTGTTGTACGGCGCACAATGGAAAGGAGCCAGAAGCCAAAACAGAAGCATAACCGTTGGTCGTGGGGAGGCTCTCTCCATGGGAGCCCTAGCATCCACAGTGCAGATCCAGACAGGCGGTCAGTTTCCACCATGAATCTTTCGAAATATGTTGATCCCGTCATTAGCAAGCGGCTCTCCTCTTCATCTGCAACTTTACTAAATTCTCCAGATAGAGCTCGCCGCCTGCAGCTCAGCCCATGGGAGAGCAGCGTTGTTAACAGACTCCTGACGCCCACACATTCGTTCCTGGCCAGAAGTAAAAGCACAGCTGCCTTGTCTGGAGAAGCAGTTATCCCCATTTGTCCTCGTTCAGCATCTTGCAGCCCCATCATCATGCCCTACAAAGCTGCACACTCTAGAAATTCGATGGATCGACCAAAACTCTTTGTAACACCACCTGAGGGCTCTTCTCGCAGGAGGATCATTCATGGCACAGCGAGCTATAAAAAAGAAAGAGAGAGAGAAAATGTACTCTTCCTCACATCTGGCACCCGAAGGGCTGTATCTCCATCTAATCCCAAAGCAAGACAACCAGCTCGCTCCCGACTTTGGCTTCCGTCCAAGTCTCTTCCTCATTTGCCTGGCACACCCAGACCGACATCCTCCTTGCCACCCGGCTCAGTCAAAGCTGCTCCTGCTCAGGTCCGGCCCCCATCCCCCGGCAACATCCGCCCTGTCAAGAGGGAAGTCAAAGTGGAGCCTGAGAAGAAAGATCCTGAGAAGGAACCTCAGAAAGTTGCCAATGAGCCCTCACTAAAGGGCAGAGCACCTTTAGTGAAGGTAGAAGAAGCCACAGTTGAAGAGCGGACACCTGCTGAACCAGAAGTTGGCCCTGCTGCTCCAGCCATGGCCCCAGCTCCAGCCTCGGCCCCAGCTCCAGCCTCGGCCCCAGCTCCAGCCCCGGTCCCCACCCCAGCCATGGTCTCAGCCCCGTCATCCACTGTGAATGCCAGTGCTTCTGTTAAGACTTCTGCAGGCACCACCGACCCAGAGGAGGCCACAAGGCTTCTAGCTGAGAAGAGGCGGCTGGCCCGAGAGCAGAGAGAAAAGGAAGAAAGGGAGAGGAGGGAGCAGGAAGAGCTTGAAAGACAAAAGAGAGAGGAATTGGCTCAACGTGTGGCTGAAGAGAGGACGACTCGCCGTGAGGAGGAGTCGCGCAGGCTGGAAGCCGAGCAGGCCCGGGAGAAGGAGGAGCAGCTGCAGCGGCAGGCGGAGGAGCGGGCGCTGCGCGAGCGGGAGGAGGCAGAGCGCGCCCAGAGGCAGAAAGAAGAAGAAGCTCGCGTTCGTGAAGAAGCAGAGAGGGTCCGGCAGGAACGAGAGAAGCATTTCCAGAGAGAAGAGCAAGAGCGCCTGGAGAGAAAGAAGCGACTTGAGGAGATTATGAAAAGAACCAGGAGAACAGAAGCTACAGATAAGAAAACCAGTGATCAGAGAAACGGTGATATAGCCAAGGGAGCTCTCACTGGAGGAACAGAGGTGTCTGCACTTCCATGTACAACAAACGCTCCGGGAAATGGAAAGCCAGTTGGCAGCCCACATGTGGTTACCTCACACCAGTCAAAAGTGACAGTGGAGAGCACTCCCGATTTGGAAAAACAACCAAATGAAAATGGTGTATCTGTTCAGAATGAAAATTTTGAAGAAATTATAAACTTACCCATTGGATCTAAACCATCCAGATTAGATGTCACCAACAGTGAGAGCCCAGAAATTCCTTTGAATCCAATTTTGGCCTTTGATGATGAAGGGACACTTGGGCCCCTGCCTCAGGTAGATGGTGTTCAGACACAGCAGACTGCAGAAGTTATATGA MKKEGSSGSFRLQPNTGSLSRAVSWINFSSLSRQTKRLFRSDGELSVCGQQVEVDDENWIYRAQPRKAVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRHDGYRSSQYYSQGPTFAANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINITAPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDDRQRLARERREEREKQLAAREIVWLEREERARQHYEKHLEERKKRLEEQRQKEERRRAAVEEKRRQRLEEDKERHEAVVRRTMERSQKPKQKHNRWSWGGSLHGSPSIHSADPDRRSVSTMNLSKYVDPVISKRLSSSSATLLNSPDRARRLQLSPWESSVVNRLLTPTHSFLARSKSTAALSGEAVIPICPRSASCSPIIMPYKAAHSRNSMDRPKLFVTPPEGSSRRRIIHGTASYKKERERENVLFLTSGTRRAVSPSNPKARQPARSRLWLPSKSLPHLPGTPRPTSSLPPGSVKAAPAQVRPPSPGNIRPVKREVKVEPEKKDPEKEPQKVANEPSLKGRAPLVKVEEATVEERTPAEPEVGPAAPAMAPAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGTTDPEEATRLLAEKRRLAREQREKEERERREQEELERQKREELAQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALREREEAERAQRQKEEEARVREEAERVRQEREKHFQREEQERLERKKRLEEIMKRTRRTEATDKKTSDQRNGDIAKGALTGGTEVSALPCTTNAPGNGKPVGSPHVVTSHQSKVTVESTPDLEKQPNENGVSVQNENFEEIINLPIGSKPSRLDVTNSESPEIPLNPILAFDDEGTLGPLPQVDGVQTQQTAEVI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31274 SUN1::FAM133B ENSG00000164828.18::ENSG00000234545.8 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1481 FALSE NA FALSE NA SUN1 ENSG00000164828.18 protein_coding + + chr7:816615-896435:+ chr7:872562:+ chr7:856252-936072:+ chr7:912199:+ FAM133B ENSG00000234545.8 protein_coding - - chr7:92560758-92590393:- chr7:92569915:- chr7:92190072-92219707:- chr7:92199229:- chr7:875977,chr7:875977,chr7:875977 chr7:92571572,chr7:92571595,chr7:92571606 NA NA chr7:915614,chr7:915614,chr7:915614 chr7:92200886,chr7:92200909,chr7:92200920 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MRP|63-328|2.6e-61^NPV_P10|260-274|6.9^CCDC144C|400-437|0.00054^NPV_P10|402-437|0.0044^Prefoldin_2|402-432|0.094^JIP_LZII|405-438|0.067^FapA|414-513|0.00026^Apolipoprotein|415-529|0.00088^COG6_N|416-438|0.18^Trimer_CC|418-438|1.2e-05^ZapB|418-484|0.0047^Prefoldin_2|458-506|0.0031^CCDC144C|466-538|0.0054^FapA|466-552|0.00069^COG6_N|466-523|0.0026^Trimer_CC|472-493|2.1^Apolipoprotein|476-578|0.00073^HTH_SUN2|478-500|7.3^NPV_P10|478-529|0.3^ZapB|480-530|0.026^JIP_LZII|491-537|0.0011^Trimer_CC|507-523|0.87^COG6_N|511-579|0.095^Prefoldin_2|512-540|0.46^Trimer_CC|538-547|3.8^NPV_P10|538-549|1.3^HTH_SUN2|584-642|2.6e-11^Sad1_UNC|686-819|9.4e-52 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:91.66Mb] 72 28 64.25 25 ONLY_REF_SPLICE YES_LDAS 0.9279 GT 1.9329 AG 1.8892 ENST00000405266.5 1-2352 ENST00000427372.5 487-714 chr7|+|[0]832525-832601[1]|[2]838798-838986[1]|[2]841946-842130[0]|[1]843206-843232[0]|[1]843341-843520[0]|[1]849923-850033[0]|[1]851384-851482[0]|[1]851950-852043[1]|[2]852609-852667[0]|[1]852810-852952[2]|[0]853409-853618[2]|[0]854920-855006[2]|[0]856358-856401[1]|[2]857828-857957[2]|[0]860128-860382[2]|[0]861380-861464[0]|[1]865952-866067[2]|[0]869349-869516[2]|[0]872470-872562[2]<==>chr7|-|[2]92562282-92562368[0]|[2]92566014-92566061[0]|[2]92569823-92569915[0] atggatttttctcggcttcacatgtacagtcctccccagtgtgtgccggagaacacgggctacacgtatgcgctcagttccagctattcttcagatgctctggattttgagacggagcacaaattggaccctgtatttgattctccacggatgtcccgccgtagtttgcgcctggccacgacagcatgcaccctgggggatggtgaggctgtgggtgccgacagcggcaccagcagcgctgtctccctgaagaaccgagcggccagaacaacaaaacagcgcagaagcacaaacaaatcagcttttagtatcaaccacgtgtcaaggcaggtcacgtcctctggcgtcagccacggcggcactgtcagcctgcaggatgctgtgactcgacggcctcctgtattggacgagtcttggattcgtgaacagaccacagtggaccacttctggggtcttgatgatgatggtgatcttaaaggtggaaataaagctgccattcagggaaacggggatgtgggagccgccgccgccaccgcgcacaacggcttctcctgcagcaactgcagcatgctgtccgagcgcaaggacgtgctcacggcgcaccccgcggcccccgggcccgtgtcgagagtttattctagggacaggaatcaaaaatgcgacgactgtaagggcaagaggcacctcgacgcgcacacagccgcccactcgcagtcgccacggctgcccggtcgggcagggaccctctggcacatctgggcatgtgcaggttacttcttgctgcagattctgcgcaggatcggagctgtgggccaggctgtgtccaggacggcgtggtcggccctttggctggccgtggttgctccagggaaggcagcctctggagtgttctggtggctggggattggatggtaccagtttgttactttgatttcttggctgaatgtgtttcttcttaccaggtgccttcgaaacatctgcaagtttttagtcttgctcatcccactcttccttttactagcaggtctctccttacggggccagggcaatttcttttcgttcttgcccgtgttgaactgggcaagcatgcatagaacacagcgggtggatgacccccaggacgtgtttaaacccacgacttctcgcctgaagcagcctctgcagggtgacagtgaggcttttccgtggcattggatgagtggcgtggagcagcaggtggcctctctgtctggacagtgccaccaccatggtgagaatctccgagagctgaccactttgctacagaagctgcaggctcgggtggaccagatggaaggcggcgctgccgggccgtcagcttcggtcagagacgctgtgggacagcccccgagggagactgactttatggcctttcaccaagaacatgaagtgcgtatgtcacacttggaagatattctgggaaaactgagagaaaaatctgaggccatccagaaggaactagaacagaccaagcaaaaaacaatcagtgcggttggtgagcagctcctgcccacagtcgagcacctccagctggagctggatcagctaaagtcagagctgtccagctggcgacacgtgaagaccggctgtgagacagtggatgccgtacaagaaagagtggacgtgcaagtcagagaaatggtgaaactcctgttttccgaagatcagcaaggcggttctctggaacagctgctgcagaggttctcatcacagtttgtgagcaaaggcgacttgcagacgatgctgcgagacctgcagctgcagatcctgcggaacgtcacccaccacgtttccgtgaccaagcagctcccaacctcagaagccgtggtgtctgctgtgagcgaggcgggggcgtctggaataacagaggcgcaagcacgtgccatcgtgaacagcgccttgaagctgtattcccaagataagaccgggatggtggactttgctctggaatctggtggtggcagcatcttgagtactcgctgttctgaaacttacgaaaccaaaacggcgctgatgagtctgtttgggatcccgctgtggtacttctcgcagtccccgcgcgtggtcatccagcctgacatttaccccggtaactgctgggcatttaaaggctcccaggggtacctggtggtgaggctctccatgatgatccacccagccgccttcactctggagcacatccctaagacgctgtcgccaacaggcaacatcagcagcgcccccaaggacttcgccgtctatggattagaaaatgagtatcaggaagaagggcagcttctgggacagttcacgtatgatcaggatggggagtcgctccagatgttccaggccctgGATATTAAAGGACTCAGCAAAAAGAGAAAGATGTATTCTGAAGATAAACCTTTATCATCTGAGTCCTTGTCAGAATCAGAGTATATTGAGGAGGTGCGAGCAAAAAAGAAGAAAAGCAGTGAAGAACGAGAAAAAGCAACAGAAAAAACAAAAAAGAAAAAGAAGCATAAGAAACACAGTAAGAAGAAGAAAAAGAAGGCTGCTAGTTCAAGTCCTGACTCACCATAA MDFSRLHMYSPPQCVPENTGYTYALSSSYSSDALDFETEHKLDPVFDSPRMSRRSLRLATTACTLGDGEAVGADSGTSSAVSLKNRAARTTKQRRSTNKSAFSINHVSRQVTSSGVSHGGTVSLQDAVTRRPPVLDESWIREQTTVDHFWGLDDDGDLKGGNKAAIQGNGDVGAAAATAHNGFSCSNCSMLSERKDVLTAHPAAPGPVSRVYSRDRNQKCDDCKGKRHLDAHTAAHSQSPRLPGRAGTLWHIWACAGYFLLQILRRIGAVGQAVSRTAWSALWLAVVAPGKAASGVFWWLGIGWYQFVTLISWLNVFLLTRCLRNICKFLVLLIPLFLLLAGLSLRGQGNFFSFLPVLNWASMHRTQRVDDPQDVFKPTTSRLKQPLQGDSEAFPWHWMSGVEQQVASLSGQCHHHGENLRELTTLLQKLQARVDQMEGGAAGPSASVRDAVGQPPRETDFMAFHQEHEVRMSHLEDILGKLREKSEAIQKELEQTKQKTISAVGEQLLPTVEHLQLELDQLKSELSSWRHVKTGCETVDAVQERVDVQVREMVKLLFSEDQQGGSLEQLLQRFSSQFVSKGDLQTMLRDLQLQILRNVTHHVSVTKQLPTSEAVVSAVSEAGASGITEAQARAIVNSALKLYSQDKTGMVDFALESGGGSILSTRCSETYETKTALMSLFGIPLWYFSQSPRVVIQPDIYPGNCWAFKGSQGYLVVRLSMMIHPAAFTLEHIPKTLSPTGNISSAPKDFAVYGLENEYQEEGQLLGQFTYDQDGESLQMFQALDIKGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASSSPDSP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31276 B3GNTL1::OGFOD3 ENSG00000175711.9::ENSG00000181396.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1482 FALSE NA FALSE NA B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:83014454:- chr17:80900025-81009685:- chr17:80972330:- OGFOD3 ENSG00000181396.13 protein_coding - - chr17:82389210-82418637:- chr17:82392534:- chr17:80347086-80376513:- chr17:80350410:- chr17:83009539,chr17:83009541,chr17:83009541 chr17:82395364,chr17:82395363,chr17:82395361 NA NA chr17:80967415,chr17:80967417,chr17:80967417 chr17:80353240,chr17:80353239,chr17:80353237 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Glyco_tranf_2_3|3-134|1.4e-12^Glycos_transf_2|6-177|7.6e-29^Glyco_tranf_2_2|7-108|1.5e-06^Glyco_tranf_2_2|272-280|0.95 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.52Mb] 44 21 44 21 ONLY_REF_SPLICE YES_LDAS 0.6758 GT 1.7465 AG 1.5219 ENST00000320865.4 1-363 ENST00000313056.10 824-960 chr17|-|[2]83014454-83014519[0]|[2]83035035-83035099[1]|[0]83048471-83048570[0]|[2]83048669-83048785[0]|[2]83051737-83051751[0]<==>chr17|-|[2]82392398-82392534[1] atgcaggcccacgtgtctattatcctcccagtccacaacgctgaaccgtggctggacgaatgtttgaggtctgttttgcaacaggactttgaaggtaccatggagctgtctgttttcaatgatgccagtaaggacaagtctggggctatcattgaaaaatggagagtgaagctggaagattctggtgtccacgtgatcattggggggcacgattctccctctcctagaggcgtcggatacgctaaaaatcaagcagttgcccagagctcagggtcttacctttgctttttggattcggatgacgtcatgatgccccagcgggtgaggctgcaacacgaggctgccgttcagcacccgtcgagcGTCGCGTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCATCACCATCGCCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAG MQAHVSIILPVHNAEPWLDECLRSVLQQDFEGTMELSVFNDASKDKSGAIIEKWRVKLEDSGVHVIIGGHDSPSPRGVGYAKNQAVAQSSGSYLCFLDSDDVMMPQRVRLQHEAAVQHPSSVASPSSPRGPRTYTAWRRSTGAPVTPSPSPSAATPTMASRTQRSR FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31280 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59930174:+ chr17:57970407-58027935:+ chr17:58007535:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2|90-151|0.015^Pkinase|91-352|2.5e-74^PK_Tyr_Ser-Thr|92-335|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1|166-242|6e-07^DUF1015|173-215|0.00014^FTA2|200-225|0.0013^Kinase-like|207-335|7.5e-11^Pkinase_fungal|207-275|5.5e-08^Pkinase_C|373-413|1.4e-14^Pkinase|404-421|1.5 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 20 9 20 6.21 ONLY_REF_SPLICE YES_LDAS 0.2725 GT 1.9329 AG 1.8062 ENST00000406116.7 1-587 ENST00000592619.5 137-176 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]|[0]59926435-59926582[0]|[1]59930117-59930174[1]<==>chr17|+|[2]59808796-59808835[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaacttggcatggaacattgtgagaaatttgaaatctcagaaactagtgtgaacagagggccagaaaaaatcagaccagaatgttttgagctacttcgggtacttggtaaagggggctatggaaaggtttttcaagtacgaaaagtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaaaggcaatgatagtaagaaatgctaaagatacagctcatacaaaagcagaacggaatattctggaggaagtaaagcatcccttcatcgtggatttaatttatgcctttcagactggtggaaaactctacctcatccttgagtatctcagtggaggagaactatttatgcagttagaaagagagggaatatttatggaagacactgcctgGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAG MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTAWTLPPGPNWQFKN* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31283 NHSL1::MAP7 ENSG00000135540.12::ENSG00000135525.19 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1484 TRUE 2632 TRUE 1013 NHSL1 ENSG00000135540.12 protein_coding - - chr6:138422043-138692571:- chr6:138441983:- chr6:138743180-139013708:- chr6:138763120:- MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136421799:- chr6:136663419-136871957:- chr6:136742937:- chr6:138440700,chr6:138440702 chr6:136459440,chr6:136459439 NA NA chr6:138761837,chr6:138761839 chr6:136780578,chr6:136780577 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NHS-PARTIAL|21-664~|0 MAP7-PARTIAL|~134-180|4.1e-05^MAP7|412-423|0.95^MAP7|498-647|1.3e-43 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.87Mb] 13 56 13 23.22 ONLY_REF_SPLICE YES_LDAS 0.3766 GT 1.8323 AG 1.6895 ENST00000343505.10 1-664 ENST00000617204.4 134-2340 chr6|-|[0]138441983-138442114[1]|[0]138447001-138447193[0]|[2]138473306-138473433[1]|[0]138496219-138496371[1]|[0]138499233-138499290[0]<==>chr6|-|[2]136344228-136344238[1]|[0]136345856-136346079[2]|[1]136356692-136356794[1]|[0]136359820-136359877[0]|[2]136359981-136360031[0]|[2]136360697-136360798[0]|[2]136361005-136361179[2]|[1]136362450-136362702[1]|[0]136365735-136366018[2]|[1]136366327-136366439[0]|[2]136372501-136372649[1]|[0]136377755-136377868[1]|[0]136383671-136383781[1]|[0]136388393-136388510[0]|[2]136389354-136389517[1]|[0]136411620-136411697[1]|[0]136421701-136421799[1] atggtggtcttcattaatgcaaagattaagtctttaattaaactttttaagaagaaaacggtttccaacctagatgaggaaagccgatggacagtccactacactgccccgtggcaccagcaggagaatgtgttccttcccaccacaagacccccctgtgttgaggacctgcaccgccaagccaagctcaacctcaaatcagtactgagggaatgcgataagttgcggcatgatggctaccgcagttctcagtactactctcagggacccacctttgcggccaacgccagcccattctgtgatgattaccaagatgaagatgaagaaacagatcaaaagtgttctctgtcttcatcagaagaagaaagatttatttccatcaggagacctaaaacaccagcctcaagtgacttctccgaccttaatactcagacgaactggaccaagtcgcttccactgccaacaccagaagagaagatgcgacagcaagcccaaacagtccaggctgacgtggtgcctattaacataactggggagaatttcgatcgccaggccagccttcggcggtctctaatttacacagacactctggtaagacgaccgaagaaagtcaaaaggagaaagactattacaggagtccctgacaacatacagaaggagctagCACCCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAATAACAACCACTCAGGAAATAAACCAGACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCCCGGGAGCGACGTGAGGAACGGGAGAAACAGCTAGCTGCAAGAGAAATAGTGTGGTTAGAAAGAGAAGAGCGAGCCAGGCAGCACTACGAGAAGCACCTGGAAGAGCGGAAGAAGAGGTTGGAGGAGCAGAGGCAGAAGGAGGAGCGGAGGAGGGCTGCTGTGGAGGAGAAGCGGAGGCAGAGACTTGAGGAGGACAAAGAACGCCACGAAGCTGTTGTACGGCGCACAATGGAAAGGAGCCAGAAGCCAAAACAGAAGCATAACCGTTGGTCGTGGGGAGGCTCTCTCCATGGGAGCCCTAGCATCCACAGTGCAGATCCAGACAGGCGGTCAGTTTCCACCATGAATCTTTCGAAATATGTTGATCCCGTCATTAGCAAGCGGCTCTCCTCTTCATCTGCAACTTTACTAAATTCTCCAGATAGAGCTCGCCGCCTGCAGCTCAGCCCATGGGAGAGCAGCGTTGTTAACAGACTCCTGACGCCCACACATTCGTTCCTGGCCAGAAGTAAAAGCACAGCTGCCTTGTCTGGAGAAGCAGTTATCCCCATTTGTCCTCGTTCAGCATCTTGCAGCCCCATCATCATGCCCTACAAAGCTGCACACTCTAGAAATTCGATGGATCGACCAAAACTCTTTGTAACACCACCTGAGGGCTCTTCTCGCAGGAGGATCATTCATGGCACAGCGAGCTATAAAAAAGAAAGAGAGAGAGAAAATGTACTCTTCCTCACATCTGGCACCCGAAGGGCTGTATCTCCATCTAATCCCAAAGCAAGACAACCAGCTCGCTCCCGACTTTGGCTTCCGTCCAAGTCTCTTCCTCATTTGCCTGGCACACCCAGACCGACATCCTCCTTGCCACCCGGCTCAGTCAAAGCTGCTCCTGCTCAGGTCCGGCCCCCATCCCCCGGCAACATCCGCCCTGTCAAGAGGGAAGTCAAAGTGGAGCCTGAGAAGAAAGATCCTGAGAAGGAACCTCAGAAAGTTGCCAATGAGCCCTCACTAAAGGGCAGAGCACCTTTAGTGAAGGTAGAAGAAGCCACAGTTGAAGAGCGGACACCTGCTGAACCAGAAGTTGGCCCTGCTGCTCCAGCCATGGCCCCAGCTCCAGCCTCGGCCCCAGCTCCAGCCTCGGCCCCAGCTCCAGCCCCGGTCCCCACCCCAGCCATGGTCTCAGCCCCGTCATCCACTGTGAATGCCAGTGCTTCTGTTAAGACTTCTGCAGGCACCACCGACCCAGAGGAGGCCACAAGGCTTCTAGCTGAGAAGAGGCGGCTGGCCCGAGAGCAGAGAGAAAAGGAAGAAAGGGAGAGGAGGGAGCAGGAAGAGCTTGAAAGACAAAAGAGAGAGGAATTGGCTCAACGTGTGGCTGAAGAGAGGACGACTCGCCGTGAGGAGGAGTCGCGCAGGCTGGAAGCCGAGCAGGCCCGGGAGAAGGAGGAGCAGCTGCAGCGGCAGGCGGAGGAGCGGGCGCTGCGCGAGCGGGAGGAGGCAGAGCGCGCCCAGAGGCAGAAAGAAGAAGAAGCTCGCGTTCGTGAAGAAGCAGAGAGGGTCCGGCAGGAACGAGAGAAGCATTTCCAGAGAGAAGAGCAAGAGCGCCTGGAGAGAAAGAAGCGACTTGAGGAGATTATGAAAAGAACCAGGAGAACAGAAGCTACAGATAAGAAAACCAGTGATCAGAGAAACGGTGATATAGCCAAGGGAGCTCTCACTGGAGGAACAGAGGTGTCTGCACTTCCATGTACAACAAACGCTCCGGGAAATGGAAAGCCAGTTGGCAGCCCACATGTGGTTACCTCACACCAGTCAAAAGTGACAGTGGAGAGCACTCCCGATTTGGAAAAACAACCAAATGAAAATGGTGTATCTGTTCAGAATGAAAATTTTGAAGAAATTATAAACTTACCCATTGGATCTAAACCATCCAGATTAGATGTCACCAACAGTGAGAGCCCAGAAATTCCTTTGAATCCAATTTTGGCCTTTGATGATGAAGGGACACTTGGGCCCCTGCCTCAGGTAGATGGTGTTCAGACACAGCAGACTGCAGAAGTTATATGA MVVFINAKIKSLIKLFKKKTVSNLDEESRWTVHYTAPWHQQENVFLPTTRPPCVEDLHRQAKLNLKSVLRECDKLRHDGYRSSQYYSQGPTFAANASPFCDDYQDEDEETDQKCSLSSSEEERFISIRRPKTPASSDFSDLNTQTNWTKSLPLPTPEEKMRQQAQTVQADVVPINITGENFDRQASLRRSLIYTDTLVRRPKKVKRRKTITGVPDNIQKELAPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDDRQRLARERREEREKQLAAREIVWLEREERARQHYEKHLEERKKRLEEQRQKEERRRAAVEEKRRQRLEEDKERHEAVVRRTMERSQKPKQKHNRWSWGGSLHGSPSIHSADPDRRSVSTMNLSKYVDPVISKRLSSSSATLLNSPDRARRLQLSPWESSVVNRLLTPTHSFLARSKSTAALSGEAVIPICPRSASCSPIIMPYKAAHSRNSMDRPKLFVTPPEGSSRRRIIHGTASYKKERERENVLFLTSGTRRAVSPSNPKARQPARSRLWLPSKSLPHLPGTPRPTSSLPPGSVKAAPAQVRPPSPGNIRPVKREVKVEPEKKDPEKEPQKVANEPSLKGRAPLVKVEEATVEERTPAEPEVGPAAPAMAPAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGTTDPEEATRLLAEKRRLAREQREKEERERREQEELERQKREELAQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALREREEAERAQRQKEEEARVREEAERVRQEREKHFQREEQERLERKKRLEEIMKRTRRTEATDKKTSDQRNGDIAKGALTGGTEVSALPCTTNAPGNGKPVGSPHVVTSHQSKVTVESTPDLEKQPNENGVSVQNENFEEIINLPIGSKPSRLDVTNSESPEIPLNPILAFDDEGTLGPLPQVDGVQTQQTAEVI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31287 MPZL1::POU2F1 ENSG00000197965.12::ENSG00000143190.23 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1488 FALSE NA FALSE NA MPZL1 ENSG00000197965.12 protein_coding + + chr1:167721192-167791919:+ chr1:167722242:+ chr1:167690429-167761156:+ chr1:167691479:+ POU2F1 ENSG00000143190.23 protein_coding + + chr1:167220876-167427345:+ chr1:167411959:+ chr1:167190113-167396582:+ chr1:167381196:+ chr1:167755395,chr1:167755393 chr1:167402254,chr1:167402249 NA NA chr1:167724632,chr1:167724630 chr1:167371491,chr1:167371486 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Trp_oprn_chp|2-46|7.2e-05^FTR1|8-41|0.04^V-set-PARTIAL|42-91~|8.8e-27^I-set|42-75|0.037^ig-PARTIAL|43-91~|2.1e-07^Ig_3-PARTIAL|43-91~|6.7e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.29Mb] 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.104 GT 1.5656 AG 1.8323 ENST00000359523.7 1-91 ENST00000367862.9 1523-2268 chr1|+|[0]167722152-167722242[0]<==>chr1|+|[1]167411959-167412304[1]|[2]167413026-167413114[0]|[1]167415500-167415810[2] atggcagcgtccgccggagccggggcggtgattgcagccccagacagccggcgctggctgtggtcggtgctggcggcggcgcttgggctctGCACTTCAGACACCACCTCCAACAACACAGCAACCGTGATTTCCACAGCGCCTCCAGCTTCCTCAGCAGTCACGTCCCCCTCTCTGAGTCCCTCCCCTTCTGCCTCAGCCTCCACCTCCGAGGCATCCAGTGCCAGTGAGACCAGCACAACACAGACCACCTCCACTCCTTTGTCCTCCCCTCTTGGGACCAGCCAGGTGATGGTGACAGCATCAGGTTTGCAAACAGCAGCAGCTGCTGCCCTTCAAGGAGCTGCACAGTTGCCAGCAAATGCCAGTCTTGCTGCCATGGCAGCTGCTGCAGGACTAAACCCAAGCCTGATGGCACCCTCACAGTTTGCGGCTGGAGGTGCCTTACTCAGTCTGAATCCAGGGACCCTGAGCGGTGCTCTCAGCCCAGCTCTAATGAGCAACAGTACACTGGCAACTATTCAAGCTCTTGCTTCTGGTGGCTCTCTTCCAATAACATCACTTGATGCAACTGGGAACCTGGTATTTGCCAATGCGGGAGGAGCCCCCAACATCGTGACTGCCCCTCTGTTCCTGAACCCTCAGAACCTCTCTCTGCTCACCAGCAACCCTGTTAGCTTGGTCTCTGCCGCCGCAGCATCTGCAGGGAACTCTGCACCTGTAGCCAGCCTTCACGCCACCTCCACCTCTGCTGAGTCCATCCAGAACTCTCTCTTCACAGTGGCCTCTGCCAGCGGGGCTGCGTCCACCACCACCACCGCCTCCAAGGCACAGTGA MAASAGAGAVIAAPDSRRWLWSVLAAALGLCTSDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASETSTTQTTSTPLSSPLGTSQVMVTASGLQTAAAAALQGAAQLPANASLAAMAAAAGLNPSLMAPSQFAAGGALLSLNPGTLSGALSPALMSNSTLATIQALASGGSLPITSLDATGNLVFANAGGAPNIVTAPLFLNPQNLSLLTSNPVSLVSAAAASAGNSAPVASLHATSTSAESIQNSLFTVASASGAASTTTTASKAQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31290 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1486 TRUE 2633 TRUE 1014 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59931722:+ chr17:57970407-58027935:+ chr17:58009083:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59808796:+ chr17:57784553-57919616:+ chr17:57886157:+ chr17:59932774,chr17:59932776,chr17:59932772,chr17:59932773 chr17:59777157,chr17:59777159,chr17:59777156,chr17:59777153 NA NA chr17:58010135,chr17:58010137,chr17:58010133,chr17:58010134 chr17:57854518,chr17:57854520,chr17:57854517,chr17:57854514 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FTA2|90-151|0.015^Pkinase|91-352|2.5e-74^PK_Tyr_Ser-Thr|92-335|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1|166-242|6e-07^DUF1015|173-215|0.00014^FTA2|200-225|0.0013^Kinase-like|207-335|7.5e-11^Pkinase_fungal|207-275|5.5e-08^Pkinase_C|373-413|1.4e-14^Pkinase|404-421|1.5 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 8 10 8 3.79 ONLY_REF_SPLICE YES_LDAS 0.1226 GT 1.9329 AG 1.8062 ENST00000406116.7 1-688 ENST00000591877.2 715-1260 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]|[0]59926435-59926582[0]|[1]59930117-59930174[1]|[2]59931622-59931722[0]<==>chr17|+|[0]59808796-59808876[2]|[0]59811670-59811786[2]|[0]59817712-59817773[1]|[2]59834012-59834050[1]|[2]59838295-59838397[2]|[0]59839768-59839911[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaacttggcatggaacattgtgagaaatttgaaatctcagaaactagtgtgaacagagggccagaaaaaatcagaccagaatgttttgagctacttcgggtacttggtaaagggggctatggaaaggtttttcaagtacgaaaagtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaaaggcaatgatagtaagaaatgctaaagatacagctcatacaaaagcagaacggaatattctggaggaagtaaagcatcccttcatcgtggatttaatttatgcctttcagactggtggaaaactctacctcatccttgagtatctcagtggaggagaactatttatgcagttagaaagagagggaatatttatggaagacactgcctgcttttacttggcagaaatctccatggctttggggcatttacatcaaaaggggatcatctacagagacctgaagccggagaatatcatgcttaatcaccaagGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGGCTGGAGGACAATGGCGCACTGCAACCTCCACCTCCCAGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGLCLPGQTGSSKTSTESWIFWNFGLCFNSKSFI*SGWNNVWTLSGTFLDLLWCNPNWKSNNKNAYPENFCYNNIQQAHSGANGGFHWAGGQWRTATSTSQCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV*KVGRCHGVLLHPIYH*LHGTKLCQTNPAAVELRGEN*I FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FALSE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,TRUE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 TRUE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|TRUE,TRUE|TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|TRUE|TRUE,TRUE|TRUE|TRUE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,TRUE|TRUE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31293 SCNN1A::ENSG00000284523 ENSG00000111319.13::ENSG00000284523.2 TE11 SRR8615828 SRR8670672 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SCNN1A ENSG00000111319.13 protein_coding - - chr12:6346843-6377730:- chr12:6354438:- chr12:6456009-6486896:- chr12:6463604:- ENSG00000284523 ENSG00000284523.2 lncRNA - - chr7:99252452-99325826:- chr7:99319444:- chr7:98850075-98923449:- chr7:98917067:- chr12:6350454,chr12:6350462 chr7:99323311,chr7:99323316 NA NA chr12:6459620,chr12:6459628 chr7:98920934,chr7:98920939 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 16 7 13.25 ONLY_REF_SPLICE YES_LDAS 0.2106 GT 1.9656 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31295 PTPN23::ELP6 ENSG00000076201.16::ENSG00000163832.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1490 FALSE NA FALSE NA PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47396217:+ chr3:47422501-47454925:+ chr3:47437707:+ ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47511226:- chr3:47537130-47555202:- chr3:47552716:- chr3:47399211,chr3:47399212 chr3:47511632,chr3:47511631 NA NA chr3:47440701,chr3:47440702 chr3:47553122,chr3:47553121 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BRO1|9-54|1.5e-10 ELP6-PARTIAL|~55-251|2.2e-123 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.08Mb];LOCAL_INVERSION:+:-:[82199] 254 65 254 65 ONLY_REF_SPLICE YES_LDAS 2.2889 GT 1.9656 AG 1.9656 ENST00000602307.5 1-159 ENST00000296149.9 55-801 chr3|+|[0]47381097-47381180[2]|[0]47396143-47396217[2]<==>chr3|-|[2]47496069-47496197[0]|[2]47498286-47498432[0]|[2]47501650-47501851[2]|[1]47504330-47504448[0]|[2]47510184-47510254[1]|[0]47511148-47511226[0] atggaggccgtgccccgcatgcccatgatctggctggacctgaaggaggccggtgactttcacttccagccagctgtgaagaagtttgtcctgaagaattatggagagaacccagaagcctacaatgaagaactgaagaagctggagttgctcagacagGGGAAACTGACTCTACTCTGTGATGCCAAGACAGATGGGAGTTTCCTTGTACACCACTTTCTCTCCTTCTATCTCAAAGCTAATTGTAAAGTCTGCTTTGTGGCACTCATCCAGTCCTTCAGCCACTACAGTATCGTGGGACAGAAGCTGGGTGTCAGCCTGACCATGGCGCGGGAGCGTGGGCAGCTTGTGTTCCTTGAGGGACTCAAGTCTGCAGTGGACGTCGTCTTCCAGGCTCAAAAGGAGCCACACCCCCTGCAGTTTCTCAGGGAGGCTAATGCTGGGAACTTGAAACCATTGTTTGAGTTTGTACGGGAGGCCCTGAAGCCAGTAGACAGTGGAGAGGCTCGGTGGACGTACCCGGTGCTGTTGGTGGACGACCTCAGTGTGCTCCTGAGCCTGGGCATGGGGGCGGTGGCTGTGCTAGACTTCATTCACTACTGCAGAGCCACCGTGTGCTGGGAACTAAAGGGAAACATGGTGGTCCTTGTGCACGACAGTGGAGATGCGGAGGATGAGGAGAATGACATCCTGCTGAATGGCCTCAGTCATCAGAGCCATCTGATACTGCGGGCTGAGGGCCTGGCCACTGGCTTCTGCAGGGATGTGCACGGGCAGCTGAGGATCCTGTGGAGGAGACCATCGCAGCCCGCAGTCCACCGGGATCAGAGCTTCACTTACCAGTATAAGATACAGGACAAAAGCGTGTCCTTTTTTGCCAAAGGAATGTCTCCTGCTGTTCTGTGA MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVVLVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRDQSFTYQYKIQDKSVSFFAKGMSPAVL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31296 ELP6::PTPN23 ENSG00000163832.16::ENSG00000076201.16 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1491 FALSE NA FALSE NA ELP6 ENSG00000163832.16 protein_coding - - chr3:47495640-47513712:- chr3:47513537:- chr3:47537130-47555202:- chr3:47555027:- PTPN23 ENSG00000076201.16 protein_coding + + chr3:47381011-47413435:+ chr3:47404652:+ chr3:47422501-47454925:+ chr3:47446142:+ chr3:47511629,chr3:47511631 chr3:47399210,chr3:47399208 NA NA chr3:47553119,chr3:47553121 chr3:47440700,chr3:47440698 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ELP6|2-45|1.4e-23 BRO1-PARTIAL|~160-380|1.5e-122^ORF6C|259-317|0.00041^DUF6852|370-400|0.085^Y_phosphatase3|375-412|1.1^ALIX_LYPXL_bnd|417-701|1.1e-58^PTPlike_phytase|437-511|1.2^ORF6C|447-477|1.1^PTPlike_phytase|556-607|3.4^Y_phosphatase|559-578|2.7^Y_phosphatase3|567-632|0.0033^BRO1|570-607|0.89^DUF6852|571-616|0.0013^DUF6852|1193-1234|5.2^Y_phosphatase|1220-1450|2.1e-71^Y_phosphatase3|1377-1412|4e-05^PTPlike_phytase|1378-1404|0.00015^DSPc|1381-1406|6.7e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.08Mb];LOCAL_INVERSION:-:+:[82199] 33 21 33 21 ONLY_REF_SPLICE YES_LDAS 0.3875 GT 1.4566 AG 1.9329 ENST00000442215.6 1-54 ENST00000265562.5 160-4911 chr3|-|[2]47513537-47513590[0]<==>chr3|+|[0]47404652-47404779[1]|[2]47405005-47405081[0]|[1]47405749-47405798[2]|[0]47405915-47406046[2]|[0]47406325-47406405[2]|[0]47406481-47406612[2]|[0]47406703-47406750[2]|[0]47407130-47407186[2]|[0]47407309-47407367[1]|[2]47407505-47407584[0]|[1]47407697-47407811[1]|[2]47407890-47407955[1]|[2]47408345-47408490[0]|[1]47408776-47409087[0]|[1]47409163-47409317[2]|[0]47409417-47409568[1]|[2]47409655-47409834[1]|[2]47409928-47411686[2]|[0]47411783-47411967[1]|[2]47412094-47412198[1]|[2]47412283-47412421[2]|[0]47412514-47412627[2]|[0]47412706-47413185[2] atgttcgtggaacttaataacctgcttaacaccacccccgacagggcggagcagAATGCTGTCCGTGTCCCACGAGACTTTGAGGGCTGTAGTGTCCTCCGCAAGTACCTCGGCCAGCTTCATTACCTGCAGAGTCGGGTCCCCATGGGCTCGGGCCAGGAGGCCGCTGTCCCTGTCACCTGGACAGAGATCTTCTCAGGCAAGTCTGTGGCCCATGAGGACATCAAGTACGAGCAGGCCTGTATTCTCTACAACCTTGGAGCGCTGCACTCCATGCTGGGGGCCATGGACAAGCGGGTGTCTGAGGAGGGCATGAAGGTCTCCTGTACCCATTTCCAGTGCGCAGCCGGCGCCTTCGCCTACCTACGGGAGCACTTCCCTCAAGCCTACAGCGTCGACATGAGCCGCCAGATCCTTACGCTCAACGTCAACCTCATGCTGGGCCAGGCTCAGGAGTGCCTCCTGGAGAAGTCGATGTTGGACAACAGGAAGAGCTTTCTGGTGGCCCGCATCAGTGCACAGGTGGTAGATTACTACAAGGAGGCATGCCGGGCCTTGGAGAACCCCGACACTGCCTCACTGCTGGGCCGGATCCAGAAGGACTGGAAGAAACTTGTGCAGATGAAGATCTACTACTTCGCAGCCGTGGCTCATCTGCACATGGGAAAGCAGGCCGAGGAGCAGCAGAAGTTCGGGGAGCGGGTTGCATACTTCCAGAGCGCCCTGGACAAGCTCAATGAAGCCATCAAGTTGGCCAAGGGCCAGCCTGACACTGTGCAAGACGCGCTTCGCTTCACTATGGATGTCATTGGGGGAAAGTACAATTCTGCCAAGAAGGACAACGACTTCATTTACCATGAGGCTGTCCCAGCATTGGACACTCTTCAGCCTGTAAAAGGAGCCCCCTTGGTGAAGCCCTTGCCAGTGAACCCCACAGACCCAGCTGTTACAGGCCCTGACATCTTTGCCAAACTGGTACCCATGGCTGCCCACGAGGCCTCGTCACTGTACAGTGAGGAGAAGGCCAAGCTGCTCCGGGAGATGATGGCCAAGATTGAGGACAAGAATGAGGTCCTGGACCAGTTCATGGATTCAATGCAGTTGGATCCCGAGACGGTGGACAACCTTGATGCCTACAGCCACATCCCACCCCAGCTCATGGAGAAGTGCGCGGCTCTCAGCGTCCGGCCCGACACTGTCAGGAACCTTGTACAGTCCATGCAAGTGCTGTCAGGTGTGTTCACGGATGTGGAGGCTTCCCTGAAGGACATCAGAGATCTGTTGGAGGAGGATGAGCTGCTAGAGCAGAAGTTTCAGGAGGCGGTGGGCCAGGCAGGGGCCATCTCCATCACCTCCAAGGCTGAGCTGGCAGAGGTGAGGCGAGAATGGGCCAAGTACATGGAAGTCCATGAGAAGGCCTCCTTCACCAACAGTGAGCTGCACCGTGCCATGAACCTGCACGTCGGCAACCTGCGCCTGCTCAGCGGGCCGCTTGACCAGGTCCGGGCTGCCCTGCCCACACCGGCCCTCTCCCCAGAGGACAAGGCCGTGCTGCAAAACCTAAAGCGCATCCTGGCTAAGGTGCAGGAGATGCGGGACCAGCGCGTGTCCCTGGAGCAGCAGCTGCGTGAGCTTATCCAGAAAGATGACATCACTGCCTCGCTGGTCACCACAGACCACTCAGAGATGAAGAAGTTGTTCGAGGAGCAGCTGAAAAAGTATGACCAGCTGAAGGTGTACCTGGAGCAGAACCTGGCCGCCCAGGACCGTGTCCTCTGTGCACTGACAGAGGCCAACGTGCAGTACGCAGCCGTGCGGCGGGTACTCAGCGACTTGGACCAAAAGTGGAACTCCACGCTGCAGACCCTGGTGGCCTCGTATGAAGCCTATGAGGACCTGATGAAGAAGTCGCAGGAGGGCAGGGACTTCTACGCAGATCTGGAGAGCAAGGTGGCTGCTCTGCTGGAGCGCACGCAGTCCACCTGCCAGGCCCGCGAGGCTGCCCGCCAGCAGCTCCTGGACAGGGAGCTGAAGAAGAAGCCGCCGCCACGGCCCACAGCCCCAAAGCCGCTGCTGCCCCGCAGGGAGGAGAGTGAGGCAGTGGAAGCAGGAGACCCCCCTGAGGAGCTGCGCAGCCTCCCCCCTGACATGGTGGCTGGCCCACGACTGCCTGACACCTTCCTGGGAAGTGCCACCCCGCTCCACTTTCCTCCCAGCCCCTTCCCCAGCTCCACAGGCCCAGGACCCCACTATCTCTCAGGCCCCTTGCCCCCTGGTACCTACTCGGGCCCCACCCAGCTGATACAGCCCAGGGCCCCAGGGCCCCATGCAATGCCCGTAGCACCTGGGCCTGCCCTCTACCCAGCCCCTGCCTACACACCGGAGCTGGGCCTTGTGCCCCGATCCTCCCCACAGCATGGCGTGGTGAGCAGTCCCTATGTGGGGGTAGGGCCGGCCCCACCAGTTGCAGGTCTCCCCTCGGCCCCACCTCCTCAATTCTCAGGCCCCGAGTTGGCCATGGCGGTTCGGCCAGCCACCACCACAGTAGATAGCATCCAGGCGCCCATCCCCAGCCACACAGCCCCACGGCCAAACCCCACCCCTGCTCCTCCCCCGCCCTGCTTCCCTGTGCCCCCACCGCAGCCACTGCCCACGCCTTACACCTACCCTGCAGGGGCTAAGCAACCCATCCCGGCACAGCACCACTTCTCTTCTGGGATCCCCGCAGGTTTTCCAGCCCCAAGGATTGGGCCCCAGCCCCAGCCCCATCCTCAGCCCCATCCTTCACAAGCGTTTGGGCCTCAGCCCCCACAGCAGCCCCTTCCACTCCAGCATCCACATCTCTTCCCACCCCAGGCCCCAGGACTCCTACCCCCACAATCCCCCTACCCCTATGCCCCTCAGCCTGGGGTCCTGGGGCAGCCGCCACCCCCCCTACACACCCAGCTCTACCCAGGTCCCGCTCAAGACCCTCTGCCAGCCCACTCAGGGGCTCTGCCTTTCCCCAGCCCTGGGCCCCCTCAGCCTCCCCATCCCCCACTGGCATATGGTCCTGCCCCTTCTACCAGACCCATGGGCCCCCAGGCAGCCCCTCTTACCATTCGAGGGCCCTCGTCTGCTGGCCAGTCCACCCCTAGTCCCCACCTGGTGCCTTCACCTGCCCCATCTCCAGGGCCTGGTCCGGTACCCCCTCGCCCCCCAGCAGCAGAACCACCCCCTTGCCTGCGCCGAGGCGCCGCAGCTGCAGACCTGCTCTCCTCCAGCCCGGAGAGCCAGCATGGCGGCACTCAGTCTCCTGGGGGTGGGCAGCCCCTGCTGCAGCCCACCAAGGTGGATGCAGCTGAGGGTCGTCGGCCGCAGGCCCTGCGGCTGATTGAGCGGGACCCCTATGAGCATCCTGAGAGGCTGCGGCAGTTGCAGCAGGAGCTGGAGGCCTTTCGGGGTCAGCTGGGGGATGTGGGAGCTCTGGACACTGTCTGGCGAGAGCTGCAAGATGCGCAGGAACATGATGCCCGAGGCCGTTCCATCGCCATTGCCCGCTGCTACTCACTGAAGAACCGGCACCAGGATGTCATGCCCTATGACAGTAACCGTGTGGTGCTGCGCTCAGGCAAGGATGACTACATCAATGCCAGCTGCGTGGAGGGGCTCTCCCCATACTGCCCCCCGCTAGTGGCAACCCAGGCCCCACTGCCTGGCACAGCTGCTGACTTCTGGCTCATGGTCCATGAGCAGAAAGTGTCAGTCATTGTCATGCTGGTTTCTGAGGCTGAGATGGAGAAGCAAAAAGTGGCACGCTACTTCCCCACCGAGAGGGGCCAGCCCATGGTGCACGGTGCCCTGAGCCTGGCATTGAGCAGCGTCCGCAGCACCGAAACCCATGTGGAGCGCGTGCTGAGCCTGCAGTTCCGAGACCAGAGCCTCAAGCGCTCTCTTGTGCACCTGCACTTCCCCACTTGGCCTGAGTTAGGCCTGCCCGACAGCCCCAGCAACTTGCTGCGCTTCATCCAGGAGGTGCACGCACATTACCTGCATCAGCGGCCGCTGCACACGCCCATCATTGTGCACTGCAGCTCTGGTGTGGGCCGCACGGGAGCCTTTGCACTGCTCTATGCAGCTGTGCAGGAGGTGGAGGCTGGGAACGGAATCCCTGAGCTGCCTCAGCTGGTGCGGCGCATGCGGCAGCAGAGAAAGCACATGCTGCAGGAGAAGCTGCACCTCAGGTTCTGCTATGAGGCAGTGGTGAGACACGTGGAGCAGGTCCTGCAGCGCCATGGTGTGCCTCCTCCATGCAAACCCTTGGCCAGTGCAAGCATCAGCCAGAAGAACCACCTTCCTCAGGACTCCCAGGACCTGGTCCTCGGTGGGGATGTGCCCATCAGCTCCATCCAGGCCACCATTGCCAAGCTCAGCATTCGGCCTCCTGGGGGGTTGGAGTCCCCGGTTGCCAGCTTGCCAGGCCCTGCAGAGCCCCCAGGCCTCCCGCCAGCCAGCCTCCCAGAGTCTACCCCAATCCCATCTTCCTCCCCGCCCCCCCTTTCCTCCCCACTACCTGAGGCTCCCCAGCCTAAGGAGGAGCCGCCAGTGCCTGAAGCCCCCAGCTCGGGGCCCCCCTCCTCCTCCCTGGAATTGCTGGCCTCCTTGACCCCAGAGGCCTTCTCCCTGGACAGCTCCCTGCGGGGCAAACAGCGGATGAGCAAGCATAACTTTCTGCAGGCCCATAACGGGCAAGGGCTGCGGGCCACCCGGCCCTCTGACGACCCCCTCAGCCTTCTGGATCCACTCTGGACACTCAACAAGACCTGA MFVELNNLLNTTPDRAEQNAVRVPRDFEGCSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSGKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAKGQPDTVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPAVTGPDIFAKLVPMAAHEASSLYSEEKAKLLREMMAKIEDKNEVLDQFMDSMQLDPETVDNLDAYSHIPPQLMEKCAALSVRPDTVRNLVQSMQVLSGVFTDVEASLKDIRDLLEEDELLEQKFQEAVGQAGAISITSKAELAEVRREWAKYMEVHEKASFTNSELHRAMNLHVGNLRLLSGPLDQVRAALPTPALSPEDKAVLQNLKRILAKVQEMRDQRVSLEQQLRELIQKDDITASLVTTDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDRVLCALTEANVQYAAVRRVLSDLDQKWNSTLQTLVASYEAYEDLMKKSQEGRDFYADLESKVAALLERTQSTCQAREAARQQLLDRELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATPLHFPPSPFPSSTGPGPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGVVSSPYVGVGPAPPVAGLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPAGFPAPRIGPQPQPHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGLLPPQSPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAPSPGPGPVPPRPPAAEPPPCLRRGAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGRRPQALRLIERDPYEHPERLRQLQQELEAFRGQLGDVGALDTVWRELQDAQEHDARGRSIAIARCYSLKNRHQDVMPYDSNRVVLRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAADFWLMVHEQKVSVIVMLVSEAEMEKQKVARYFPTERGQPMVHGALSLALSSVRSTETHVERVLSLQFRDQSLKRSLVHLHFPTWPELGLPDSPSNLLRFIQEVHAHYLHQRPLHTPIIVHCSSGVGRTGAFALLYAAVQEVEAGNGIPELPQLVRRMRQQRKHMLQEKLHLRFCYEAVVRHVEQVLQRHGVPPPCKPLASASISQKNHLPQDSQDLVLGGDVPISSIQATIAKLSIRPPGGLESPVASLPGPAEPPGLPPASLPESTPIPSSSPPPLSSPLPEAPQPKEEPPVPEAPSSGPPSSSLELLASLTPEAFSLDSSLRGKQRMSKHNFLQAHNGQGLRATRPSDDPLSLLDPLWTLNKT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31298 PRPF6::HUNK ENSG00000101161.8::ENSG00000142149.9 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1492 FALSE NA FALSE NA PRPF6 ENSG00000101161.8 protein_coding + + chr20:63981132-64033100:+ chr20:63981316:+ chr20:62612485-62664453:+ chr20:62612669:+ HUNK ENSG00000142149.9 protein_coding + + chr21:31873020-32044633:+ chr21:31958843:+ chr21:33245333-33416946:+ chr21:33331155:+ chr20:63982031,chr20:63982031 chr21:31949909,chr21:31949906 NA NA chr20:62613384,chr20:62613384 chr21:33322221,chr21:33322218 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PRP1_N-PARTIAL|13-71~|1.4e-58 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr21] 18 7 18 7 ONLY_REF_SPLICE YES_LDAS 0.1794 GT 1.053 AG 1.8256 ENST00000266079.5 1-71 ENST00000270112.7 747-2145 chr20|+|[0]63981246-63981316[1]<==>chr21|+|[2]31958843-31958970[0]|[1]31968250-31968385[1]|[2]31974555-31974717[2]|[0]31983526-31983609[2]|[0]31990129-31990176[2]|[0]31995768-31995948[0]|[1]31998526-31999184[2] atgaacaagaagaagaaaccgttcctagggatgcccgcgcccctcggctacgtgccggggctgggccggggAGGTGTGAACATGTATGCCATGTTGACCGGGACGCTGCCTTTCACGGTGGAGCCTTTCAGCCTGAGGGCTTTGTACCAGAAGATGGTAGACAAAGAAATGAACCCCCTCCCCACTCAGCTCTCCACAGGTGCCATCAGTTTCCTGCGCTCTCTCCTGGAACCGGATCCTGTGAAGAGGCCAAATATTCAGCAGGCACTGGCGAATCGCTGGCTTAATGAGAATTACACGGGCAAAGTGCCCTGTAATGTCACCTATCCCAACAGGATTTCTCTGGAAGATCTGAGCCCGAGCGTCGTGCTGCACATGACCGAGAAGCTGGGTTACAAGAACAGCGACGTGATCAACACTGTGCTCTCCAACCGCGCCTGCCACATCCTGGCCATCTACTTCCTCTTAAACAAGAAACTGGAGCGCTATTTGTCAGGGAAATCTGACATCCAGGACAGCCTCTGCTACAAGACCCGGCTCTACCAGATAGAAAAGTACAGGGCCCCCAAGGAGTCCTATGAGGCCTCTCTGGACACCTGGACACGAGATCTTGAATTCCATGCCGTGCAGGATAAAAAGCCCAAAGAACAAGAAAAAAGAGGGGATTTTCTTCATCGACCATTCTCCAAGAAGTTGGACAAGAACCTGCCCTCGCACAAACAGCCCTCAGGCTCGCTTATGACACAGATTCAGAACACCAAAGCCCTCCTGAAGGACCGGAAGGCCTCCAAGTCCAGCTTCCCCGACAAAGATTCCTTTGGCTGCCGCAATATTTTCCGCAAAACCTCAGATTCCAATTGTGTGGCTTCTTCTTCCATGGAGTTCATCCCCGTGCCACCGCCCAGGACCCCGAGGATTGTGAAGAAACCGGAGCCCCATCAGCCAGGGCCCGGAAGCACTGGCATCCCCCACAAGGAAGACCCCCTGATGCTGGACATGGTGCGCTCCTTCGAGTCTGTGGATCGCGACGACCACGTAGAAGTGCTGTCTCCCTCTCATCACTACAGGATTCTGAACTCCCCGGTCAGCTTGGCTCGCAGAAATTCCAGCGAGAGGACGCTGTCCCCGGGTCTGCCATCCGGAAGCATGTCGCCTCTCCATACTCCTTTGCATCCAACTCTGGTCTCTTTTGCTCACGAAGATAAGAACAGCCCCCCAAAAGAGGAGGGCCTGTGTTGCCCACCTCCGGTTCCCAGCAATGGCCCCATGCAGCCTCTGGGGAGCCCCAATTGTGTGAAAAGCCGAGGCCGGTTCCCTATGATGGGCATCGGACAGATGTTAAGGAAGCGCCATCAGAGTCTGCAGCCATCTGCAGATAGGCCCCTGGAGGCCAGCCTGCCCCCACTGCAGCCCCTAGCCCCTGTGAACCTTGCCTTTGACATGGCCGATGGGGTCAAGACCCAGTGCTAA MNKKKKPFLGMPAPLGYVPGLGRGGVNMYAMLTGTLPFTVEPFSLRALYQKMVDKEMNPLPTQLSTGAISFLRSLLEPDPVKRPNIQQALANRWLNENYTGKVPCNVTYPNRISLEDLSPSVVLHMTEKLGYKNSDVINTVLSNRACHILAIYFLLNKKLERYLSGKSDIQDSLCYKTRLYQIEKYRAPKESYEASLDTWTRDLEFHAVQDKKPKEQEKRGDFLHRPFSKKLDKNLPSHKQPSGSLMTQIQNTKALLKDRKASKSSFPDKDSFGCRNIFRKTSDSNCVASSSMEFIPVPPPRTPRIVKKPEPHQPGPGSTGIPHKEDPLMLDMVRSFESVDRDDHVEVLSPSHHYRILNSPVSLARRNSSERTLSPGLPSGSMSPLHTPLHPTLVSFAHEDKNSPPKEEGLCCPPPVPSNGPMQPLGSPNCVKSRGRFPMMGIGQMLRKRHQSLQPSADRPLEASLPPLQPLAPVNLAFDMADGVKTQC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Hormonally up-regulated neu tumor-associated kinase CAMK CAMKL HUNK P57058 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31299 SAMD5::ENSG00000227681 ENSG00000203727.4::ENSG00000227681.5 T84 SRR8615829 SRR8670673 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA SAMD5 ENSG00000203727.4 protein_coding + + chr6:147508690-147737547:+ chr6:147509387:+ chr6:147829826-148058683:+ chr6:147830523:+ ENSG00000227681 ENSG00000227681.5 lncRNA + + chr6:147660703-147953937:+ chr6:147733729:+ chr6:147981839-148275073:+ chr6:148054865:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 15 3 15 2.89 ONLY_REF_SPLICE YES_LDAS 0.1283 GT 1.8295 AG 1.5219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31304 RNF157::FOXJ1 ENSG00000141576.16::ENSG00000129654.8 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RNF157 ENSG00000141576.16 protein_coding - - chr17:76142465-76240493:- chr17:76240153:- chr17:74138546-74236574:- chr17:74236234:- FOXJ1 ENSG00000129654.8 protein_coding - - chr17:76136333-76141245:- chr17:76138120:- chr17:74132414-74137326:- chr17:74134201:- chr17:76237397,chr17:76237403 chr17:76139387,chr17:76139390 NA NA chr17:74233478,chr17:74233484 chr17:74135468,chr17:74135471 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["RNF157:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.00Mb];NEIGHBORS[1154] 63 6 63 6 ONLY_REF_SPLICE YES_LDAS 0.7356 GT 1.6729 AG 1.7819 ENST00000647930.1 1-88 ENST00000322957.7 499-1266 chr17|-|[0]76240153-76240240[0]<==>chr17|-|[2]76137353-76138120[0] atgggggccctgacgagccggcagcacgcgggcgtggaggaggtggacatcccgtctaattccgtgtaccgctacccgcccaagtccgAATTCAATCCGCCACAACCTGTCTCTGAACAAGTGCTTCATCAAAGTGCCTCGGGAGAAGGACGAACCAGGCAAGGGGGGCTTCTGGCGCATTGACCCCCAGTACGCGGAGCGGCTACTGAGCGGCGCTTTCAAGAAGCGGCGACTGCCCCCTGTCCACATCCACCCAGCCTTTGCCCGCCAGGCCGCGCAGGAGCCCAGCGCTGTCCCCCGGGCCGGGCCGCTGACGGTGAATACCGAGGCCCAGCAGCTGCTGCGGGAGTTCGAGGAGGCCACCGGGGAGGCGGGCTGGGGTGCAGGCGAGGGCAGGCTGGGGCATAAGCGCAAACAGCCGCTGCCCAAGCGGGTGGCCAAGGTCCCGCGGCCCCCCAGCACCCTGCTGCCCACCCCGGAGGAGCAGGGTGAGCTGGAACCCCTCAAAGGCAACTTTGACTGGGAGGCCATCTTCGACGCCGGCACTCTGGGCGGGGAGCTGGGTGCACTGGAGGCCCTGGAGCTGAGCCCGCCTCTGAGCCCCGCCTCACACGTGGACGTGGACCTCACCATCCACGGCCGCCACATCGACTGCCCTGCCACCTGGGGGCCTTCGGTGGAGCAGGCTGCCGACAGCCTGGACTTCGATGAGACCTTCCTGGCCACATCCTTCCTGCAGCACCCCTGGGACGAGAGCGGCAGTGGCTGCCTGCCCCCGGAGCCCCTCTTTGAGGCTGGGGATGCCACCCTGGCCTCCGACCTGCAGGACTGGGCCAGCGTGGGGGCCTTCTTGTAA MGALTSRQHAGVEEVDIPSNSVYRYPPKSEFNPPQPVSEQVLHQSASGEGRTRQGGLLAH*PPVRGAATERRFQEAATAPCPHPPSLCPPGRAGAQRCPPGRAADGEYRGPAAAAGVRGGHRGGGLGCRRGQAGA*AQTAAAQAGGQGPAAPQHPAAHPGGAG*AGTPQRQL*LGGHLRRRHSGRGAGCTGGPGAEPASEPRLTRGRGPHHPRPPHRLPCHLGAFGGAGCRQPGLR*DLPGHILPAAPLGRERQWLPAPGAPL*GWGCHPGLRPAGLGQRGGLLV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31305 DSN1::SOGA1 ENSG00000149636.16::ENSG00000149639.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1494 TRUE 2650 TRUE 1023 DSN1 ENSG00000149636.16 protein_coding - - chr20:36751791-36773818:- chr20:36770873:- chr20:35380194-35402221:- chr20:35399276:- SOGA1 ENSG00000149639.15 protein_coding - - chr20:36777447-36863538:- chr20:36794599:- chr20:35405850-35491941:- chr20:35423002:- chr20:36768172,chr20:36768174 chr20:36796298,chr20:36796297 NA NA chr20:35396575,chr20:35396577 chr20:35424701,chr20:35424700 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MIS13|79-240|7.5e-55 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.00Mb];LOCAL_REARRANGEMENT:-:[3624] 58 35 58 30.85 ONLY_REF_SPLICE YES_LDAS 0.9472 GT 1.8256 AG 1.8256 ENST00000447406.1 1-355 ENST00000237536.9 3483-4986 chr20|-|[0]36770873-36771193[1]|[0]36771425-36771458[0]<==>chr20|-|[2]36786485-36786637[0]|[2]36793249-36794599[2] atgacttcagtgactagatcagagatcatagatgaaaaaggaccagtgatgtctaagactcatgatcatcaattggaatcaagtctcagtcctgtggaagtgtttgctaaaacatctgcctccctggagatgaatcaaggcgtttcagaggaaagaattcaccttggctctagccctaaaaaagggggaaattgtgatctcagccaccaggaaagacttcagtcgaagtcccttcatttgtctcctcaagaacaatctgccagttatcaagacaggaggcaatcctggcggcgagcaagtatgaaagaaacgaaccggcggaagtcgctgcatcccattcaccagggcatcacagAACCAAATCTGTTTCTTCCATGTCTGAGTTTGAAAGTTTGCTCGACTGTTCCCCTTACCTTGCTGGCGGAGATGCCCGGGGCAAGAAGCTGCCTAACAACCCTGCCTTTGGCTTTGTGAGCTCCGAGCCAGGGGATCCAGAGAAAGACACCAAGGAGAAGCCTGGGCTCTCGTCGAGGGACTGCAACCACCTGGGTGCCCTGGCCTGCCAGGACCCCCCAGGGAGGCAGATGCAGCGCAGCTACACGGCTCCTGACAAGACGGGCATCCGAGTCTACTATAGTCCCCCGGTGGCCCGGCGCCTCGGAGTCCCTGTGGTTCATGACAAAGAGGGCAAGATCATTATCGAGCCCGGCTTCCTCTTCACCACAGCCAAGCCCAAAGAGTCGGCCGAGGCTGATGGGCTGGCTGAGAGCTCCTATGGTCGGTGGCTCTGCAACTTCTCACGGCAGCGCCTGGACGGAGGCTCAGCGGGCAGCCCCTCGGCGGCCGGGCCTGGCTTCCCAGCGGCCCTGCATGACTTTGAGATGTCAGGCAACATGAGTGATGACATGAAGGAGATCACCAACTGTGTGCGCCAGGCCATGCGCTCCGGCTCACTGGAGAGGAAAGTGAAGAGCACATCCAGCCAGACGGTGGGCCTGGCCAGTGTGGGCACACAGACCATCCGCACGGTCAGCGTGGGCCTGCAGACCGACCCACCCCGCAGCAGCCTCCATGGCAAGGCCTGGTCACCCCGCAGCTCTTCGCTCGTGTCTGTGCGCAGCAAGCAGATCTCCTCCTCCCTGGACAAGGTCCATTCGCGCATCGAGCGGCCCTGCTGCTCCCCCAAGTATGGCTCACCAAAGCTCCAGAGGCGGTCTGTGTCCAAGCTGGACAGCAGCAAGGACCGCAGCCTGTGGAACCTGCACCAGGGCAAGCAGAACGGCTCGGCCTGGGCCCGCTCCACCACCACGCGGGACAGCCCTGTATTGAGAAACATCAACGATGGACTCTCCAGCCTCTTCAGTGTGGTGGAGCACTCAGGGAGCACGGAGTCTGTCTGGAAACTAGGCATGTCTGAGACGCGGGCCAAGCCCGAGCCTCCCAAGTACGGCATTGTGCAGGAATTCTTCCGTAATGTGTGTGGCCGGGCACCGAGCCCCACCTCATCAGCAGGAGAGGAGGGCACCAAGAAGCCAGAGCCCCTCTCCCCAGCCAGCTACCATCAGCCAGAGGGTGTGGCCAGGATCCTGAACAAGAAGGCAGCCAAGTTGGGCAGCAGTGAGGAGGTCAGACTCACCATGCTCCCCCAGGTGGGGAAGGATGGTGTCCTCCGGGACGGAGATGGAGCCGTGGTCCTTCCCAATGAGGACGCTGTTTGTGACTGTAGTACCCAGTCTCTCACCTCCTGCTTCGCCCGATCGTCCCGCTCTGCCATCCGCCACTCTCCTTCCAAGTGCAGGCTGCACCCTTCAGAGTCCAGCTGGGGTGGGGAGGAGAGGGCACTCCCCCCCAGCGAGTGA MTSVTRSEIIDEKGPVMSKTHDHQLESSLSPVEVFAKTSASLEMNQGVSEERIHLGSSPKKGGNCDLSHQERLQSKSLHLSPQEQSASYQDRRQSWRRASMKETNRRKSLHPIHQGITEPNLFLPCLSLKVCSTVPLTLLAEMPGARSCLTTLPLAL*APSQGIQRKTPRRSLGSRRGTATTWVPWPARTPQGGRCSAATRLLTRRASESTIVPRWPGASESLWFMTKRARSLSSPASSSPQPSPKSRPRLMGWLRAPMVGGSATSHGSAWTEAQRAAPRRPGLASQRPCMTLRCQAT*VMT*RRSPTVCARPCAPAHWRGK*RAHPARRWAWPVWAHRPSARSAWACRPTHPAAASMARPGHPAALRSCLCAASRSPPPWTRSIRASSGPAAPPSMAHQSSRGGLCPSWTAARTAACGTCTRASRTARPGPAPPPRGTALY*ETSTMDSPASSVWWSTQGARSLSGN*ACLRRGPSPSLPSTALCRNSSVMCVAGHRAPPHQQERRAPRSQSPSPQPATISQRVWPGS*TRRQPSWAAVRRSDSPCSPRWGRMVSSGTEMEPWSFPMRTLFVTVVPSLSPPASPDRPALPSATLLPSAGCTLQSPAGVGRRGHSPPAS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31307 DSN1::SOGA1 ENSG00000149636.16::ENSG00000149639.15 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1495 TRUE 2650 TRUE 1023 DSN1 ENSG00000149636.16 protein_coding - - chr20:36751791-36773818:- chr20:36773662:- chr20:35380194-35402221:- chr20:35402065:- SOGA1 ENSG00000149639.15 protein_coding - - chr20:36777447-36863538:- chr20:36794599:- chr20:35405850-35491941:- chr20:35423002:- chr20:36768172,chr20:36768174 chr20:36796298,chr20:36796297 NA NA chr20:35396575,chr20:35396577 chr20:35424701,chr20:35424700 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.00Mb];LOCAL_REARRANGEMENT:-:[3624] 33 12 33 3.27 ONLY_REF_SPLICE YES_LDAS 0.3867 GT 1.7819 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31311 CD59::FBXO3 ENSG00000085063.18::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE FALSE FALSE NA TRUE 2655 TRUE 1026 CD59 ENSG00000085063.18 protein_coding - - chr11:33703010-33736479:- chr11:33717370:- chr11:33724556-33758025:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33754500:- chr11:33762485-33796089:- chr11:33776046:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF1970|32-61|1.6e-06 TLP-20-PARTIAL|~340-346|4.4e-05^DUF4637-PARTIAL|~340-341|0.0034^HSP90-PARTIAL|~340-341|0.0073 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.00Mb];LOCAL_REARRANGEMENT:-:[4494] 11 23 11 16.39 ONLY_REF_SPLICE YES_LDAS 0.292 GT 1.9329 AG 1.9329 ENST00000706436.1 1-162 ENST00000526785.5 340-1077 chr11|-|[2]33717370-33717464[1]|[0]33722379-33722445[0]<==>chr11|-|[2]33741908-33742084[0]|[2]33747130-33747320[1]|[0]33748777-33748892[2]|[1]33750539-33750661[2]|[1]33751523-33751607[1]|[0]33754455-33754500[0] atgggaatccaaggagggtctgtcctgttcgggctgctgctcgtcctggctgtcttctgccattcagcctgcagtgctacaactgtcctaacccaactgctgactgcaaaacagccgtcaattgttcatctgattttgatgcgtgtctcattaccaaagctgGACCAAATGGCTCGAAATCCAGCTGCTATTGACATGTTTATTATAGGTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAGATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACTGTGTCAGTTTCCACATCGTTTCTGCCAGAACTTAGCTCTGTACATCCACCCCACTATTTCTTCACATACCGAATCAGGATTGAAATGTCAAAAGATGCACTTCCTGAGAAGGCCTGTCAGTTGGACAGTCGCTATTGGAGAATAACAAATGCTAAGGGTGACGTGGAAGAAGTTCAAGGACCTGGAGTAGTTGGTGAATTTCCAATCATCAGCCCAGGTCGGGTATATGAATACACAAGCTGTACCACATTCTCTACAACATCAGGATACATGGAAGGATATTATACCTTCCATTTTCTTTACTTTAAAGACAAGATCTTTAATGTTGCCATTCCCCGATTCCATATGGCATGTCCAACATTCAGGGTGTCTATAGCCCGATTGGAAATGGGTCCTGATGAATATGAAGAGATGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGACGAGGATGATGATTCAGCAGATATGGATGAATCAGATGAAGATGATGAAGAGGAGAGACGGAGGAGAGTCTTTGATGTTCCCATTCGCAGACGCCGCTGCTCACGCCTTTTTTAG MGIQGGSVLFGLLLVLAVFCHSACSATTVLTQLLTAKQPSIVHLILMRVSLPKLDQMARNPAAIDMFIIGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 33731752 FALSE 33780147 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31312 EIF4G3::RAB11FIP4 ENSG00000075151.24::ENSG00000131242.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA TRUE 2652 TRUE 1024 EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21176722:- chr1:21132785-21503778:- chr1:21503215:- RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31517651:+ chr17:29718693-29865230:+ chr17:29844669:+ chr1:21105452,chr1:21105458 chr17:31477571,chr17:31477565 NA NA chr1:21431945,chr1:21431951 chr17:29804589,chr17:29804583 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Jnk-SapK_ap_N-PARTIAL|~337-382|0.0077^bZIP_2|339-355|0.22^Sec10_N|339-358|1.9^Ax_dynein_light|340-416|0.00062^Leu_zip|341-399|0.3^Shugoshin_N|343-359|0.042^WD40_alt|347-356|4.2^FlaC_arch|350-388|0.0053^EF-hand_8|356-369|2.4^EF-hand_7|357-388|7.2^HAP1_N|361-515|7.3e-05^bZIP_1|366-387|0.019^Shugoshin_N|366-375|0.71^ZapB|366-390|5.9^VGPC1_C|366-384|0.00031^bZIP_2|367-384|0.14^Leu_zip|371-510|9.9e-05^WD40_alt|373-387|0.037^Sec10_N|376-459|6.6e-05^Jnk-SapK_ap_N|378-482|0.0046^bZIP_1|405-452|4e-06^bZIP_2|413-444|0.0087^ZapB|418-462|2.4e-05^WD40_alt|418-437|0.07^FlaC_arch|418-449|0.009^Ax_dynein_light|420-484|0.0032^Shugoshin_N|421-438|0.002^VGPC1_C|422-430|0.38^FlaC_arch|425-462|0.0087^RBD-FIP|426-437|3.3^Ax_dynein_light|445-511|0.6^bZIP_1|458-485|0.15^EF-hand_7|470-490|2.5^bZIP_2|479-511|10^ZapB|479-505|1.7^bZIP_1|481-511|0.77^Jnk-SapK_ap_N|491-577|0.0058^FlaC_arch|496-508|2^WD40_alt|529-554|0.00072^bZIP_2|535-563|4.1e-06^Ax_dynein_light|537-584|0.069^bZIP_1|538-569|4.8e-05^Shugoshin_N|541-560|0.00012^Leu_zip|542-614|0.0009^ZapB|542-619|0.014^FlaC_arch|542-574|0.0031^Sec10_N|542-567|0.81^HAP1_N|542-593|0.88^RBD-FIP|545-558|7.1^VGPC1_C|546-556|0.4^RBD-FIP|596-636|4.8e-23^EF-hand_7|597-613|3.6^bZIP_2|598-617|3.6 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr17] 9 1 9 0.41 ONLY_REF_SPLICE YES_LDAS 0.1003 GT 1.9329 AG 1.8062 ENST00000634879.2 1-115 ENST00000621161.5 337-1914 chr1|-|[0]21176722-21176836[0]<==>chr17|+|[0]31517651-31517877[1]|[2]31521166-31521360[1]|[2]31521915-31522049[1]|[2]31522360-31522395[1]|[2]31523512-31523611[2]|[0]31523893-31523996[1]|[2]31525090-31525230[1]|[2]31527842-31527923[2]|[0]31528406-31528543[2]|[0]31528620-31528778[2]|[0]31530326-31530469[2]|[0]31531616-31531732[2] gtgaagaaaatccaccggcatcgcctgagccccgctaccgagaagggcgccgcttcctccggggagggggataaagatcccccgccgccggcccatgaggatattgccgtgaaagGGCAGCGAGGTCACAGGCCCCACCTTTGCTGATGGCGAGCTCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTGGCGCCACCTGAGGGCCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGAGCCTGGAGGGGTCTGTCGGGAGTCCTGCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGACAAGTCCCTGGTCCACACTCCATCCATGACGACCTCAGACCTTTCTACACACTCCACCACCTCGCTCATCAGCAATGAGGAGCAGTTTGAAGACTATGGGGAGGGTGACGATGTGGACTGTGCCCCCAGCAGCCCTTGCCCCGATGATGAGACCAGGACCAACGTCTACTCGGACCTGGGGTCTTCGGTGTCTTCCAGTGCGGGGCAGACGCCTAGGAAAATGCGGCACGTGTACAACAGCGAATTGCTAGATGTTTACTGCTCTCAATGCTGCAAGAAAATCAACCTGCTCAATGACTTGGAAGCCCGACTGAAAAACCTGAAGGCCAACAGCCCCAACCGAAAGATCTCCAGCACGGCCTTTGGACGGCAGCTCATGCACAGCAGCAACTTCAGCAGCAGCAATGGCAGCACCGAAGACCTGTTCCGGGACAGCATTGACTCTTGCGACAATGACATCACAGAGAAGGTAAGCTTCCTGGAAAAGAAGGTGACAGAGCTGGAGAATGACAGCCTGACCAATGGGGACCTGAAGAGCAAGCTGAAGCAAGAGAACACACAGCTGGTGCACAGGGTGCATGAGCTGGAGGAGATGGTGAAGGATCAGGAGACCACGGCCGAGCAGGCTCTGGAGGAGGAGGCGCGGCGCCACCGCGAGGCCTACGGCAAGCTGGAGAGGGAGAAGGCTACCGAGGTGGAGCTGCTCAATGCCAGGGTGCAGCAGTTGGAGGAAGAAAATACAGAGCTTAGAACAACAGTGACTCGGCTCAAGTCTCAAACAGAGAAACTGGATGAGGAGCGGCAGCGCATGTCTGACCGTCTGGAGGACACCAGCCTGCGGCTCAAAGATGAGATGGACCTGTACAAGCGCATGATGGACAAGCTGCGACAGAACCGCCTTGAGTTCCAGAAGGAGCGGGAGGCGACGCAGGAGCTCATCGAGGACTTGCGGAAGGAGCTGGAGCACCTGCAGATGTACAAGCTGGACTGCGAGCGGCCAGGCAGGGGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCAATGCCAGGGCCCGCGAGGTGGAGCTCGAGCACGAGGTCAAGCGGCTCAAGCAGGAGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGGCAGATTTTGAGCCTCAGCCTCTACGAAGCAAAAAACCTCTTTGCTGCCCAGACTAAAGCCCAGTCTCTGGCTGCGGAGATAGACACCGCCTCGCGCGATGAGCTAATGGAAGCCCTGAAGGAGCAGGAGGAGATCAACTTCCGGCTGAGGCAGTACATGGACAAGATTATCCTCGCCATCCTGGACCACAATCCCTCCATCCTCGAGATCAAACACTAA VKKIHRHRLSPATEKGAASSGEGDKDPPPPAHEDIAVKGQRGHRPHLC*WRAHPQGTRLFSRGRGGGYDAGAT*GPPGVVHRQPHGEHSEPGGVCRESCREGRGTWGPVSARRQVPGPHSIHDDLRPFYTLHHLAHQQ*GAV*RLWGG*RCGLCPQQPLPR**DQDQRLLGPGVFGVFQCGADA*ENAARVQQRIARCLLLSMLQENQPAQ*LGSPTEKPEGQQPQPKDLQHGLWTAAHAQQQLQQQQWQHRRPVPGQH*LLRQ*HHREGKLPGKEGDRAGE*QPDQWGPEEQAEAREHTAGAQGA*AGGDGEGSGDHGRAGSGGGGAAPPRGLRQAGEGEGYRGGAAQCQGAAVGGRKYRA*NNSDSAQVSNRETG*GAAAHV*PSGGHQPAAQR*DGPVQAHDGQAATEPP*VPEGAGGDAGAHRGLAEGAGAPADVQAGLRAARQGPQCLLWPRRVQCQGPRGGARARGQAAQAGEL*AAGSERRLEWADFEPQPLRSKKPLCCPD*SPVSGCGDRHRLAR*ANGSPEGAGGDQLPAEAVHGQDYPRHPGPQSLHPRDQTL FALSE FALSE NA NA TRUE hsa-mir-4724 chr17:31534883-31534971:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31314 EIF4G3::RAB11FIP4 ENSG00000075151.24::ENSG00000131242.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1498 TRUE 2652 TRUE 1024 EIF4G3 ENSG00000075151.24 protein_coding - - chr1:20806292-21177285:- chr1:21111323:- chr1:21132785-21503778:- chr1:21437816:- RAB11FIP4 ENSG00000131242.18 protein_coding + + chr17:31391675-31538211:+ chr17:31517651:+ chr17:29718693-29865230:+ chr17:29844669:+ chr1:21105452,chr1:21105458 chr17:31477571,chr17:31477565 NA NA chr1:21431945,chr1:21431951 chr17:29804589,chr17:29804583 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr17] 9 5 9 4.59 ONLY_REF_SPLICE YES_LDAS 0.1448 GT 1.8256 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-4724 chr17:31534883-31534971:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31316 CD59::FBXO3 ENSG00000085063.18::ENSG00000110429.14 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE FALSE TRUE 1500 TRUE 2655 TRUE 1026 CD59 ENSG00000085063.18 protein_coding - - chr11:33703010-33736479:- chr11:33717370:- chr11:33724556-33758025:- chr11:33738916:- FBXO3 ENSG00000110429.14 protein_coding - - chr11:33740939-33774543:- chr11:33751607:- chr11:33762485-33796089:- chr11:33773153:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Activin_recp|26-97|0.00049^UPAR_LY6|28-95|2e-09 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.00Mb];LOCAL_REARRANGEMENT:-:[4494] 8 19 8 6.61 ONLY_REF_SPLICE YES_LDAS 0.1558 GT 1.9329 AG 1.8295 ENST00000437761.6 1-169 ENST00000526785.5 386-1077 chr11|-|[0]33717370-33717471[1]|[0]33722379-33722445[0]<==>chr11|-|[2]33741908-33742084[0]|[2]33747130-33747320[1]|[0]33748777-33748892[2]|[1]33750539-33750661[2]|[1]33751523-33751607[1] atgggaatccaaggagggtctgtcctgttcgggctgctgctcgtcctggctgtcttctgccattcaggtcatagcctgcagtgctacaactgtcctaacccaactgctgactgcaaaacagccgtcaattgttcatctgattttgatgcgtgtctcattaccaaagctgGTGCTACTTTTACTGACTGGTTTACCTCTTATGTCAAAAATGTTGTATCAGGTGGCTTCCCCATCATCAGAGACCAAATTTTCAGATATGTTCACGATCCAGAATGTGTAGCAACAACTGGGGATATTACTGTGTCAGTTTCCACATCGTTTCTGCCAGAACTTAGCTCTGTACATCCACCCCACTATTTCTTCACATACCGAATCAGGATTGAAATGTCAAAAGATGCACTTCCTGAGAAGGCCTGTCAGTTGGACAGTCGCTATTGGAGAATAACAAATGCTAAGGGTGACGTGGAAGAAGTTCAAGGACCTGGAGTAGTTGGTGAATTTCCAATCATCAGCCCAGGTCGGGTATATGAATACACAAGCTGTACCACATTCTCTACAACATCAGGATACATGGAAGGATATTATACCTTCCATTTTCTTTACTTTAAAGACAAGATCTTTAATGTTGCCATTCCCCGATTCCATATGGCATGTCCAACATTCAGGGTGTCTATAGCCCGATTGGAAATGGGTCCTGATGAATATGAAGAGATGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAAGACGAGGATGATGATTCAGCAGATATGGATGAATCAGATGAAGATGATGAAGAGGAGAGACGGAGGAGAGTCTTTGATGTTCCCATTCGCAGACGCCGCTGCTCACGCCTTTTTTAG MGIQGGSVLFGLLLVLAVFCHSGHSLQCYNCPNPTADCKTAVNCSSDFDACLITKAGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 33731752 FALSE 33780147 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31318 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22046751:+ chr9:21994138-22128102:+ chr9:22046750:+ chr9:21875057,chr9:21875057 chr9:22033450,chr9:22033445 NA NA chr9:21875056,chr9:21875056 chr9:22033449,chr9:22033444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 6 8 6 3.85 ONLY_REF_SPLICE YES_LDAS 0.105 GT 1.9086 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31319 VAC14::HYDIN ENSG00000103043.15::ENSG00000157423.18 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1499 FALSE NA FALSE NA VAC14 ENSG00000103043.15 protein_coding - - chr16:70687439-70801160:- chr16:70800797:- chr16:70721342-70835063:- chr16:70834700:- HYDIN ENSG00000157423.18 protein_coding - - chr16:70802084-71230722:- chr16:70840233:- chr16:70835987-71264625:- chr16:70874136:- chr16:70790662,chr16:70790684 chr16:70843183,chr16:70843193 NA NA chr16:70824565,chr16:70824587 chr16:70877086,chr16:70877096 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["VAC14:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_REARRANGEMENT:-:[6217] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1066 GT 1.8323 AG 1.9656 ENST00000568548.5 1-104 ENST00000393567.7 12874-15366 chr16|-|[1]70800797-70800900[0]<==>chr16|-|[2]70807580-70808062[0]|[2]70809783-70810007[0]|[2]70818342-70818572[0]|[2]70827261-70827411[2]|[1]70828266-70828429[0]|[2]70829618-70829830[0]|[2]70832848-70833067[2]|[1]70833887-70834164[0]|[2]70835676-70835834[0]|[2]70837690-70837888[2]|[1]70840064-70840233[0] atgaaccccgagaaggatttcgcgccgctcacgcctaacatcgtgcgcgccctcaatgacaagctgtacgaaaagcggaaggtggcagcgctggagatcgagaaATCAGCCATGGTCCAACATTTATGTGCAACATCTCAGGCTGTGCTGTGAGCCCGGCTATCCATTTCTCCTTCACCAGCTACAACTTTGGGACCTGCTTTATCTATCAAGCTGGGATGCCCCCATACAAACAAACCCTGGTAATTACCAACAAGGAAGAAACACCTATGAGCATAGATTGTCTGTACACCAACACCACTCACCTCGAGGTGAACTCCCGTGTTGATGTGGTAAAGCCAGGAAACACATTGGAGATTCCAATAACTTTTTATCCTCGAGAAAGTATCAACTATCAAGAACTCATTCCCTTTGAAATCAATGGGCTCTCACAACAAACAGTCGAAATCAAAGGGAAGGGTACCAAAATGAAGATTTTAGTCCTAGATCCAGCCAACAGGATTGTGAAGTTGGGAGCTGTCCTACCAGGGCAGGTTGTGAAAAGAACAGTTTCCATCATGAACAACAGCCTGGCCCAGCTCACATTTAATCAGTCCATTCTGTTCACAATTCCAGAACTCCAGGAACCCAAGGTCCTTACCCTGGCGCCCTTCCACAACATCACACTGAAGCCCAAAGAAGTCTGTAAACTGGAAGTCATCTTTGCCCCGAAGAAGCGTGTCCCTCCCTTCTCTGAGGAAGTGTTCATGGAATGCATGGGGCTCCTGCGCCCCCTCTTCCTCCTTAGCGGCTGCTGCCAGGCCCTGGAGATCTCACTGGACCAGGAACATATTCCCTTTGGACCCGTGGTGTATCAGACGCAAGCCACACGTCGCATCCTCATGATGAACACAGGCGATGTGGGTGCAAGGTTTAAATGGGACATCAAAAAATTTGAGCCTCATTTCTCCATTAGCCCAGAAGAAGGCTATATTACCTCAGGCATGGAGGTTTCTTTTGAAGTGACCTACCATCCCACCGAGGTGGGAAAGGAGAGCCTTTGTAAAAACATTCTCTGCTACATCCAGGGAGGCAGTCCTCTGAGTCTAACCCTGTCTGGAGTCTGCGTGGGACCACCTGCGGTAAAAGAGGTAGTGAATTTCACGTGCCAGGTGCGCTCCAAGCACACGCAGACCATCCTGCTGTCAAACCGCACCAACCAGACCTGGAATCTGCACCCCATCTTTGAGGGCGAGCACTGGGAGGGGCCTGAGTTCATCACCCTGGAGGCCCACCAGCAAAACAAGCCCTATGAGATCACCTACAGGCCCCGCACCATGAACTTGGAGAACCGCAAGCACCAGGGCACCCTCTTCTTCCCCCTCCCAGATGGGACCGGCTGGCTGTATGCTCTGCATGGGACTTCTGAGCTCCCCAAAGCTGTAGCCAATATCTATCGTGAAGTGCCATGTAAGACCCCCTACACTGAGCTTCTGCCAATCACCAACTGGCTGAACAAGCCCCAGAGATTCCGGGTCATCGTGGAAATACTGAAACCAGAGAAGCCGGACCTAAGCATCACTATGAAGGGCCTTGATTACATTGATGTACTGTCTGGCTCTAAGAAAGACTACAAGCTGAACTTCTTTTCCCACAAGGAGGGAACGTACGCTGCAAAGGTGATCTTCCGAAACGAGGTGACAAATGAGTTCTTGTACTACAATGTGAGTTTCAGGGTCATCCCTTCAGGCATCATCAAAACCATCGAGATGGTGACCCCAGTCCGGCAAGTTGCGTCAGCCTCCATCAAGTTGGAGAACCCTCTGCCCTACTCGGTGACCTTCTCCACGGAATGCCGGATGCCCGACATCGCCCTGCCCTCCCAGTTTGTGGTGCCTGCCAACTCCGAGGGCACGTTCTCATTTGAATTTCAGCCCCTGAAAGCTGGAGAAACCTTCGGAAGACTAACTTTGCACAACACTGACTTGGGTTACTACCAATATGAGCTCTATCTGAAAGCCACGCCAGCACTTCCGGAAAAGCCTGTTCACTTCCAGACTGTCCTTGGCAGCAGCCAAATCATCCTTGTGAAGTTCATCAATTACACACGGCAGAGGACAGAATACTACTGCAGGACCGACTGTACAGACTTCCACGCAGAAAAACTCATTAATGCAGCCCCAGGAGGCCAGGGAGGCACTGAAGCCAGTGTGGAAGTCTTATTCGAGCCCAGCCACCTGGGTGAGACCAAGGGCATCCTGATCCTATCATCGCTCGCAGGTGGAGAGTATATCATCCCCCTCTTTGGAATGGCTCTGCCTCCCAAGCCCCAAGGTCCCTTCTCGATCCGAGCCGGGTACAGCATAATCATCCCCTTCAAGAATGTCTTCTATCACATGGTGACCTTCTCCATCATCGTGGATAACCCAGCCTTCACCATTCGCGCTGGAGAGTCTGTGCGGCCCAAGAAGATCAACAACATCACAGTCTCCTTTGAAGGAAACCCATCTGGCAGCAAAACCCCCATCACCACCAAGCTGACTGTGAGCTGCCCTCCTGGTGAAGGGAGTGAGACTGGAGTTAAATGGGTTTATTATCTGAAGGGGATCACCCTTTAG MNPEKDFAPLTPNIVRALNDKLYEKRKVAALEIEKSAMVQHLCATSQAVL*ARLSISPSPATTLGPALSIKLGCPHTNKPW*LPTRKKHL*A*IVCTPTPLTSR*TPVLMW*SQETHWRFQ*LFILEKVSTIKNSFPLKSMGSHNKQSKSKGRVPK*RF*S*IQPTGL*SWELSYQGRL*KEQFPS*TTAWPSSHLISPFCSQFQNSRNPRSLPWRPSTTSH*SPKKSVNWKSSLPRRSVSLPSLRKCSWNAWGSCAPSSSLAAAARPWRSHWTRNIFPLDPWCIRRKPHVASS**TQAMWVQGLNGTSKNLSLISPLAQKKAILPQAWRFLLK*PTIPPRWERRAFVKTFSATSREAVL*V*PCLESAWDHLR*KR**ISRARCAPSTRRPSCCQTAPTRPGICTPSLRASTGRGLSSSPWRPTSKTSPMRSPTGPAP*TWRTASTRAPSSSPSQMGPAGCMLCMGLLSSPKL*PISIVKCHVRPPTLSFCQSPTG*TSPRDSGSSWKY*NQRSRT*ASL*RALITLMYCLALRKTTS*TSFPTRRERTLQR*SSETR*QMSSCTTM*VSGSSLQASSKPSRW*PQSGKLRQPPSSWRTLCPTR*PSPRNAGCPTSPCPPSLWCLPTPRARSHLNFSP*KLEKPSED*LCTTLTWVTTNMSSI*KPRQHFRKSLFTSRLSLAAAKSSL*SSSITHGRGQNTTAGPTVQTSTQKNSLMQPQEAREALKPVWKSYSSPATWVRPRAS*SYHRSQVESISSPSLEWLCLPSPKVPSRSEPGTA*SSPSRMSSITW*PSPSSWITQPSPFALESLCGPRRSTTSQSPLKETHLAAKPPSPPS*L*AALLVKGVRLELNGFII*RGSPF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 70834700|70834700|70834700 TRUE|TRUE|TRUE 70913659|70913389|70908822 FALSE|FALSE|FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31320 RSBN1L::APTR ENSG00000187257.16::ENSG00000214293.11 LN229 SRR8615836 SRR8652097 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RSBN1L ENSG00000187257.16 protein_coding + + chr7:77696459-77783022:+ chr7:77697055:+ chr7:77325776-77412339:+ chr7:77326372:+ APTR ENSG00000214293.11 lncRNA - - chr7:77657659-77696290:- chr7:77685328:- chr7:77286976-77325607:- chr7:77314645:- chr7:77697752,chr7:77698046,chr7:77697750 chr7:77693628,chr7:77693618,chr7:77693630 NA NA chr7:77327069,chr7:77327363,chr7:77327067 chr7:77322945,chr7:77322935,chr7:77322947 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr7:0.00Mb];LOCAL_INVERSION:+:-:[178] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1066 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31322 NUP93::CYB5B ENSG00000102900.13::ENSG00000103018.18 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1503 FALSE NA FALSE NA NUP93 ENSG00000102900.13 protein_coding + + chr16:56730118-56850286:+ chr16:56805632:+ chr16:56764030-56884198:+ chr16:56839544:+ CYB5B ENSG00000103018.18 protein_coding + + chr16:69398402-69466264:+ chr16:69447150:+ chr16:69432305-69500167:+ chr16:69481053:+ chr16:56806380,chr16:56806381 chr16:69417616,chr16:69417614 NA NA chr16:56840292,chr16:56840293 chr16:69451519,chr16:69451517 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HR1|22-47|0.086^Nic96-PARTIAL|219-489~|6.2e-188^HR1|229-269|0.00011 none ["NUP93:FoundationOne_panel","NUP93:ArcherDX_panel"];["Klijn_CellLines","ChimerPub","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:12.57Mb] 47 26 47 26 ONLY_REF_SPLICE YES_LDAS 1.0131 GT 1.7465 AG 1.8256 ENST00000569842.5 1-489 ENST00000692677.1 175-525 chr16|+|[0]56748248-56748426[1]|[2]56758538-56758655[2]|[0]56798476-56798538[2]|[0]56805504-56805632[2]<==>chr16|+|[0]69447150-69447278[2]|[0]69448115-69448144[2]|[0]69456165-69456295[1]|[2]69459093-69459121[0]|[1]69462430-69462461[2] atggatactgaggggtttggtgagctccttcagcaagctgaacagcttgctgctgagactgagggcatctcagagcttccccatgtggaacggaacttacaggagatccagcaggcgggagagcgcctgcgttcccgtaccctaacacgcacgtcccaggagacggcagatgtcaaggcgtcagttctcctcgggtctcggggacttgacatatcccacatctcccagcgattggagagtctgagtgcagccaccacctttgagcctcttgagcctgtgaaggacactgacattcagggcttcctgaagaatgagaaggacaatgccctgctgtctgccatcgaagagtcccggaagaggaccttcggcatggctgaggagtaccatcgggagtcaatgttggttgagtgggagcaagtgaaacagcgaattctgcacacactgctggcatcaggagaagacgcccttgactttactcaagaaagcgagCACCCTGGAGGAGAAGAGGTTCTGCTGGAACAAGCTGGTGTAGATGCAAGTGAAAGCTTTGAAGATGTAGGACACTCTTCTGATGCCAGAGAAATGCTAAAGCAGTACTACATTGGTGATATCCATCCGAGTGACCTTAAACCTGAAAGTGGTAGCAAGGGTCTTGATCTGTCCTCCAGGCTGGAGTACAGTGGCACAATCCTAGCTCACTATAGCCTTGAACTCCTGGGCTCAGGTGATCCTCCTGCCTCAGCCTTCCCAGTGTTGGGATTCACCAGATGTGAACCAAGGACCCTTCAAAAAATGATACATGCAAAAGTTGCTGGGCATATTGGATTTTACCCATCATAG MDTEGFGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLGSRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFLKNEKDNALLSAIEESRKRTFGMAEEYHRESMLVEWEQVKQRILHTLLASGEDALDFTQESEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPESGSKGLDLSSRLEYSGTILAHYSLELLGSGDPPASAFPVLGFTRCEPRTLQKMIHAKVAGHIGFYPS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31324 FTO::RBFOX1 ENSG00000140718.22::ENSG00000078328.23 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1504 FALSE NA FALSE NA FTO ENSG00000140718.22 protein_coding + + chr16:53701692-54158512:+ chr16:53934109:+ chr16:53735604-54192424:+ chr16:53968021:+ RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6316995:+ chr16:5289803-7763342:+ chr16:6366996:+ chr16:53950826,chr16:53950824 chr16:6292604,chr16:6292599 NA NA chr16:53984738,chr16:53984736 chr16:6342605,chr16:6342600 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FTO_NTD|37-325|4.7e-133^FTO_CTD|329-498|8e-63 RRM_5-PARTIAL|~352-353|2.3e-05^Fox-1_C|353-385|0.77^Fox-1_C|412-501|1.1e-47 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:45.99Mb] 24 3 24 3 ONLY_REF_SPLICE YES_LDAS 0.3747 GT 1.9086 AG 1.7968 ENST00000637969.1 1-1364 ENST00000641259.1 352-1749 chr16|+|[0]53704185-53704229[2]|[0]53810140-53810217[2]|[0]53825864-53826491[0]|[1]53844155-53844298[0]|[1]53873786-53873865[2]|[0]53879844-53879987[2]|[0]53888832-53888951[2]|[0]53933985-53934109[1]<==>chr16|+|[0]6316995-6317057[2]|[0]6654603-6654650[2]|[0]7052057-7052098[2]|[0]7518147-7518389[2]|[0]7579777-7579920[2]|[0]7587247-7587300[2]|[0]7595549-7595641[2]|[0]7597371-7597431[0]|[1]7607285-7607338[0]|[1]7630603-7630683[0]|[1]7653815-7653947[1]|[2]7664929-7664968[2]|[0]7676774-7676838[1]|[2]7693315-7693367[0]|[1]7709056-7709131[1]|[2]7709494-7709641[2] atgaagcgcaccccgactgccgaggaacgagagcgcgaagctaagaaactgaggcttcttgaagagcttgaagacacttggctcccttatctgacccccaaagatgatgaattctatcagcagtggcagctgaaatatcctaaactaattctccgagaagccagcagtgtatctgaggagctccataaagaggttcaagaagcctttctcacactgcacaagcatggctgcttatttcgggacctggttaggatccaaggcaaagatctgctcactccggtatctcgcatcctcattggtaatccaggctgcacctacaagtacctgaacaccaggctctttacggtcccctggccagtgaaagggtctaatataaaacacaccgaggctgaaatagccgctgcttgtgagaccttcctcaagctcaatgactacctgcagatagaaaccatccaggctttggaagaacttgctgccaaagagaaggctaatgaggatgctgtgccattgtgtatgtctgcagatttccccagggttgggatgggttcatcctacaacggacaagatgaagtggacattaagagcagagcagcatacaacgtaactttgctgaatttcatggatcctcagaaaatgccatacctgaaagaggaaccttattttggcatggggaaaatggcagtgagctggcatcatgatgaaaatctggtggacaggtcagcggtggcagtgtacagttatagctgtgaaggccctgaagaggaaagtgaggatgactctcatctcgaaggcagggatcctgatatttggcatgttggttttaagatctcatgggacatagagacacctggtttggcgataccccttcaccaaggagactgctatttcatgcttgatgatctcaatgccacccaccaacactgtgttttggccggttcacaacctcggtttagttccacccaccgagtggcagagtgctcaacaggaaccttggattatattttacaacgctgtcagttggctctgcagaatgtctgtgacgatgtggacaatgatgatgtctctttgaaatcctttgagcctgcagttttgaaacaaggagaagaaattcataatgaggtcgagtttgagtggctgaggcagttttggtttcaaggcaatcgatacagaaagtgcactgactggtggtgtcaacccatggctcaactggaagcactgtggaagaagatggagggtgtgacaaatgctgtgcttcatgaagttaaaagagaggggctccccgtggaacaaaggaatgaaatcttgactgccatccttgcctcgctcactgcacgccagaacctgaggagagaatggcatgccagGAAACTGGTCAAAGAACTCATGCAAGTGGAACTTACAGCTTCCTTGATCGGACTCAGCATTCAGATATCAAAGCAGACTGCAATACCTGCGTGGAAATAGAAGACAGAAAGGTTTCAAGACAACAGATGAATTGTGAAAGAGAGCAGCTAAGGGGTAATCAGGAAGCAGCCGCTGCCCCTGACACAATGGCTCAGCCTTACGCTTCGGCCCAGTTTGCTCCCCCGCAGAACGGTATCCCCGCGGAATACACGGCCCCTCATCCCCACCCCGCGCCAGAGTACACAGGCCAGACCACGGTTCCCGAGCACACATTAAACCTGTACCCTCCCGCCCAGACGCACTCCGAGCAGAGCCCGGCGGACACGAGCGCTCAGACCGTCTCTGGCACCGCCACACAGACAGATGACGCAGCACCGACGGATGGCCAGCCCCAGACACAACCTTCTGAAAACACGGAAAACAAGTCTCAGCCCAAGCGGCTGCATGTCTCCAATATCCCCTTCAGGTTCCGGGATCCGGACCTCAGACAAATGTTTGGTCAATTTGGTAAAATCTTAGATGTTGAAATTATTTTTAATGAGCGAGGCTCAAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCGAGGGAGAAATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTAAATAATGCCACAGCACGTGTAATGACAAATAAAAAGACCGTCAACCCTTATACAAATGGCTGGAAATTGAATCCAGTTGTGGGTGCAGTCTACAGTCCCGAATTCTATGCAGGCACGGTCCTGTTGTGCCAGGCCAACCAGGAGGGATCTTCCATGTACAGTGCCCCCAGTTCACTTGTATATACTTCTGCAATGCCAGGCTTCCCGTATCCAGCAGCCACCGCCGCGGCCGCCTACCGAGGGGCGCACCTGCGAGGCCGCGGTCGCACCGTGTACAACACCTTCAGGGCCGCGGCGCCCCCGCCCCCGATCCCGGCCTACGGCGGTGTTGTTTACCAGGATGGATTTTATGGTGCAGACATTTATGGTGGTTATGCTGCATACCGCTACGCCCAGCCTACCCCTGCCACTGCCGCTGCCTACAGTGACAGAAATCAGTTCGTCTTCGTTGCAGCAGATGAAATTTCTTGTAACACCTCTGCAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTCCAGCCCCCACCTACGGCGTTGGTGCCATGCCCCAAGGTTCCAGCCCCAGCACAGACTTCAGAGGAGCTAAGCTGCACACTTCCAGGCCTCTGCTGTCAGGCAGCTGAGAATCTGACTGCCTCTCCTCCCCTATTACAATTCATGTTTAAAGTCATAGTCGCCCAGGAAAGAAAATAG MKRTPTAEEREREAKKLRLLEELEDTWLPYLTPKDDEFYQQWQLKYPKLILREASSVSEELHKEVQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPGCTYKYLNTRLFTVPWPVKGSNIKHTEAEIAAACETFLKLNDYLQIETIQALEELAAKEKANEDAVPLCMSADFPRVGMGSSYNGQDEVDIKSRAAYNVTLLNFMDPQKMPYLKEEPYFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDIWHVGFKISWDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYILQRCQLALQNVCDDVDNDDVSLKSFEPAVLKQGEEIHNEVEFEWLRQFWFQGNRYRKCTDWWCQPMAQLEALWKKMEGVTNAVLHEVKREGLPVEQRNEILTAILASLTARQNLRREWHARKLVKELMQVELTASLIGLSIQISKQTAIPAWK*KTERFQDNR*IVKESS*GVIRKQPLPLTQWLSLTLRPSLLPRRTVSPRNTRPLIPTPRQSTQARPRFPSTH*TCTLPPRRTPSRARRTRALRPSLAPPHRQMTQHRRMASPRHNLLKTRKTSLSPSGCMSPISPSGSGIRTSDKCLVNLVKS*MLKLFLMSEAQRDLVS*LSKIVPMRTGRGRNYTAPW*RAVKSR*IMPQHV**QIKRPSTLIQMAGN*IQLWVQSTVPNSMQARSCCARPTRRDLPCTVPPVHLYILLQCQASRIQQPPPRPPTEGRTCEAAVAPCTTPSGPRRPRPRSRPTAVLFTRMDFMVQTFMVVMLHTATPSLPLPLPLPTVTEISSSSLQQMKFLVTPLQLRTSLCCRPLPPRTCSSPHLRRWCHAPRFQPQHRLQRS*AAHFQASAVRQLRI*LPLLPYYNSCLKS*SPRKEN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31327 STX17::NR4A3 ENSG00000136874.11::ENSG00000119508.18 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1505 FALSE NA FALSE NA STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ NR4A3 ENSG00000119508.18 protein_coding + + chr9:99821855-99866891:+ chr9:99844649:+ chr9:102584137-102629173:+ chr9:102606931:+ chr9:99947207,chr9:99947204,chr9:99947208 chr9:99835928,chr9:99835922,chr9:99835945 NA NA chr9:102709489,chr9:102709486,chr9:102709490 chr9:102598210,chr9:102598204,chr9:102598227 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ThrE|27-72|0.31^IncD|82-96|1.7 none ["NR4A3:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.04Mb];LOCAL_REARRANGEMENT:+:[39742] 15 6 15 6 ONLY_REF_SPLICE YES_LDAS 0.2915 GT 1.9656 AG 1.8892 ENST00000259400.11 1-189 ENST00000395097.7 1255-1881 chr9|+|[0]99915240-99915362[2]|[0]99928778-99928843[2]<==>chr9|+|[0]99844649-99844848[1]|[2]99847437-99847615[0]|[1]99863620-99863867[2] atgtctgaagatgaagaaaaagtgaaattacgccgtcttgaaccagctatccagaaattcattaagatagtaatcccaacagacctggaaaggttaagaaagcaccagataaatattgagaagtatcaaaggtgcagaatctgggacaagttgcatgaagagcatatcaatgcaggacgtacagttcagTACTGTCCCACTGACCAGGCTGCTGCAGGCACAGATGCTGAGCATGTGCAACAATTCTACAACCTCCTGACAGCCTCCATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCGGGATTTACTGATCTCCCCAAAGAAGATCAGACATTACTTATTGAATCAGCCTTTTTGGAGCTGTTTGTCCTCAGACTTTCCATCAGGTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCTATTAAAGACTTTTCCTTAAATTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGCATGATCACAGAAAGACATGGGTTAAAAGAACCAAAGAGAGTCGAAGAGCTATGCAACAAGATCACAAGCAGTTTAAAAGACCACCAGAGTAAGGGACAGGCTCTGGAGCCCACCGAGTCCAAGGTCCTGGGTGCCCTGGTAGAACTGAGGAAGATCTGCACCCTGGGCCTCCAGCGCATCTTCTACCTGAAGCTGGAAGACTTGGTGTCTCCACCTTCCATCATTGACAAGCTCTTCCTGGACACCCTACCTTTCTAA MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQYCPTDQAAAGTDAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHRLQCLRGFGEWLDSIKDFSLNLQSLNLDIQALACLSALSMITERHGLKEPKRVEELCNKITSSLKDHQSKGQALEPTESKVLGALVELRKICTLGLQRIFYLKLEDLVSPPSIIDKLFLDTLPF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match TRUE Lung squamous cell carcinoma,Head and Neck squamous cell carcinoma LUNG,HEAD_AND_NECK no_match 102677644,102691125 FALSE,TRUE 102587941,102606931 FALSE,TRUE YES,YES CDS-5UTR,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nuclear receptor subfamily 4, group A, member 3 (NOR1) 1 extraskeletal myxoid chondrosarcoma mesenchymal oncogene, fusion translocation 31330 AHRR::ENSG00000290449 ENSG00000063438.20::ENSG00000290449.1 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AHRR ENSG00000063438.20 protein_coding + + chr5:321714-438291:+ chr5:376716:+ chr5:321829-438406:+ chr5:376831:+ ENSG00000290449 ENSG00000290449.1 lncRNA - - chr22:23366302-23387731:- chr22:23370462:- chr22:23708489-23729918:- chr22:23712649:- chr5:394860 chr22:23370986 NA NA chr5:394975 chr22:23713173 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 5 12 5 ONLY_REF_SPLICE YES_LDAS 0.2359 GT 1.7968 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31331 STX17::INVS ENSG00000136874.11::ENSG00000119509.13 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1506 FALSE NA FALSE NA STX17 ENSG00000136874.11 protein_coding + + chr9:99906654-99974534:+ chr9:99928843:+ chr9:102668936-102736816:+ chr9:102691125:+ INVS ENSG00000119509.13 protein_coding + + chr9:100099243-100302175:+ chr9:100226062:+ chr9:102861525-103064457:+ chr9:102988344:+ chr9:99944540,chr9:99944539,chr9:99944540 chr9:100142876,chr9:100142872,chr9:100142874 NA NA chr9:102706822,chr9:102706821,chr9:102706822 chr9:102905158,chr9:102905154,chr9:102905156 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ThrE|27-72|0.31^IncD|82-96|1.7 Ank_2-PARTIAL|~274-278|6.3e-16^Ank_2-PARTIAL|~274-352|3.6e-18^Ank-PARTIAL|~274-277|6.5e-08^Ank_4-PARTIAL|~274-309|6.1e-11^Ank_3-PARTIAL|~274-278|1.3e-06^Ank_5-PARTIAL|~274-296|1e-05^Ank_5|286-324|0.00025^Ank|289-311|8.7e-07^Ank_3|289-311|4.2e-05^Ank_5|317-361|6.2e-06^Ank_3|321-349|0.0002^Ank|322-354|0.00045^Ank_4|323-377|2.8e-13^Ank_2|326-419|5.5e-21^Ank_5|342-394|5.8e-08^Ank_3|356-384|1e-06^Ank|357-387|6.3e-10^Ank_4|359-410|9.5e-14^Ank|391-420|4.1e-07^Ank_3|391-417|1e-05^Ank_4|392-443|8.4e-12^Ank_2|394-486|2.5e-22^Ank_5|409-461|1.1e-07^Ank|422-453|1.3e-08^Ank_3|422-451|6e-07^Ank_4|425-473|1.1e-14^Ank_5|442-494|1.9e-11^Ank|456-487|7.9e-09^Ank_3|456-484|0.00021^Ank_4|468-509|1.7e-10^Ank_2|475-548|1.1e-16^Ank_5|478-531|2.7e-09^Ank_3|488-511|3.9e-06^Ank|489-517|4.3e-08^Ank_4|499-544|1.3e-07^Ank_5|520-548|0.024^Ank_3|524-548|0.00023^Ank|525-548|0.0014^IQ|558-576|1.1e-06^RD3|594-619|0.13^RD3|883-930|0.00049^IQCJ-SCHIP1|888-908|0.83^IQ|918-936|2.9e-07^IQCJ-SCHIP1|918-944|0.00015^IQCJ-SCHIP1|962-997|0.5 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.13Mb] 11 3 11 2.2 ONLY_REF_SPLICE YES_LDAS 0.1832 GT 1.9656 AG 1.8892 ENST00000259400.11 1-189 ENST00000262457.7 274-3198 chr9|+|[0]99915240-99915362[2]|[0]99928778-99928843[2]<==>chr9|+|[0]100226062-100226235[2]|[0]100229660-100229827[2]|[0]100240060-100240240[0]|[1]100242570-100242679[2]|[0]100246616-100246787[0]|[1]100252283-100252438[0]|[1]100252907-100253136[2]|[0]100264822-100264928[1]|[2]100272864-100273076[1]|[2]100284320-100284603[0]|[1]100292326-100293043[1]|[2]100296917-100297146[0]|[1]100297936-100298010[0]|[1]100300568-100300674[2] atgtctgaagatgaagaaaaagtgaaattacgccgtcttgaaccagctatccagaaattcattaagatagtaatcccaacagacctggaaaggttaagaaagcaccagataaatattgagaagtatcaaaggtgcagaatctgggacaagttgcatgaagagcatatcaatgcaggacgtacagttcagGGAAATTATCGTTTCATGAAACTCTTACTTACACGCAGAGCAAACTGGATGCAAAAGGATCTGGAAGAGATGACTCCTTTGCACTTGACCACCCGGCACAGGAGCCCTAAGTGTTTGGCACTTCTGCTGAAGTTTATGGCACCAGGAGAAGTGGATACACAGGATAAAAACAAGCAAACAGCTCTGCATTGGAGTGCCTACTACAATAACCCTGAGCATGTGAAGCTGCTCATCAAGCATGATTCTAACATTGGGATTCCTGATGTTGAAGGCAAGATCCCACTTCACTGGGCAGCCAACCATAAAGATCCAAGTGCTGTTCACACAGTGAGATGCATTCTGGATGCTGCTCCAACAGAGTCTTTACTGAACTGGCAAGACTACGAGGGTCGAACTCCTCTTCACTTTGCAGTTGCTGATGGGAATGTGACCGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAACGTCTTATGATAACTTATTTCGAACCCCACTGCACTGGGCAGCTTTATTAGGCCATGCACAGATTGTCCATCTCCTTTTAGAAAGAAATAAGTCTGGAACTATCCCATCTGACAGCCAAGGAGCCACACCTTTGCACTATGCTGCTCAGAGTAACTTTGCTGAAACGGTTAAAGTGTTTTTAAAACATCCTTCAGTGAAAGATGATTCAGACCTGGAAGGAAGAACATCCTTTATGTGGGCAGCTGGCAAAGGCAGTGATGATGTCCTTAGAACTATGCTGAGCTTAAAATCGGACATAGATATTAACATGGCTGACAAATATGGAGGTACAGCTTTGCATGCTGCTGCTCTTTCTGGCCATGTCAGCACCGTGAAGTTATTACTGGAAAATAATGCTCAAGTAGATGCTACTGATGTTATGAAACATACTCCACTTTTCCGAGCCTGTGAGATGGGACACAAAGATGTGATTCAGACACTCATTAAAGGTGGAGCAAGGGTAGATCTAGTTGACCAAGATGGACATTCTCTTCTACATTGGGCAGCACTGGGAGGAAATGCTGATGTTTGCCAGATATTAATAGAAAATAAGATCAATCCAAATGTCCAGGATTATGCAGGAAGAACCCCTTTGCAGTGTGCAGCATATGGAGGCTATATCAACTGCATGGCAGTTCTCATGGAAAACAATGCAGACCCTAACATTCAAGACAAAGAGGGAAGAACAGCTTTGCATTGGTCCTGCAACAATGGATACCTTGATGCCATTAAATTACTGCTAGACTTTGCTGCTTTCCCTAATCAGATGGAAAACAATGAAGAGAGATACACACCCCTTGATTATGCTTTGCTTGGTGAGCGCCATGAAGTGATCCAGTTCATGTTGGAGCACGGTGCCCTGTCCATCGCAGCCATACAAGACATCGCCGCCTTCAAAATCCAAGCTGTCTACAAAGGGTACAAGGTCAGAAAAGCCTTCCGAGACAGGAAAAATCTCCTCATGAAGCATGAACAGTTGAGAAAAGATGCTGCTGCCAAAAAGCGAGAGGAAGAAAACAAACGAAAAGAGGCAGAACAGCAAAAAGGAAGGCGGAGCCCAGATTCCTGCAGACCCCAGGCCCTTCCCTGTCTGCCTAGCACCCAGGATGTGCCCAGCAGGCAGAGCCGGGCCCCCAGCAAGCAGCCTCCTGCTGGCAACGTGGCCCAAGGCCCTGAGCCAAGAGACAGCAGAGGATCTCCAGGAGGGTCTCTAGGCGGAGCCCTCCAGAAGGAGCAGCATGTTTCCTCAGATTTGCAGGGAACAAACTCCAGAAGGCCAAATGAAACAGCCAGAGAACATTCTAAAGGCCAATCTGCTTGTGTCCACTTCAGACCCAATGAAGGCAGTGATGGAAGCAGGCATCCAGGAGTTCCCTCTGTTGAGAAGTCCAGAGGTGAGACAGCTGGCGATGAGCGGTGTGCAAAGGGGAAAGGCTTCGTGAAGCAGCCCTCCTGTATCAGGGTGGCTGGGCCTGATGAGAAAGGAGAGGACTCCAGGCGGGCAGCTGCAAGCCTTCCACCGCACGATAGCCACTGGAAGCCCAGCAGGCGGCATGACACAGAACCCAAGGCCAAATGTGCCCCCCAGAAAAGGCGCACTCAAGAGCTCAGAGGAGGAAGGTGCTCTCCGGCTGGTTCTAGCCGCCCTGGCAGTGCCCGGGGGGAGGCGGTCCATGCTGGGCAGAATCCTCCCCACCATCGTACACCAAGAAACAAAGTGACACAAGCCAAGCTCACAGGAGGGCTCTATTCACATTTGCCACAGAGCACAGAGGAGTTGAGGTCAGGAGCTAGGAGGCTGGAGACATCTACCCTGTCCGAGGACTTTCAGGTATCTAAGGAGACTGATCCAGCACCTGGTCCCCTCTCTGGGCAGAGTGTGAATATTGACCTTCTCCCCGTAGAGCTCCGACTGCAGATAATTCAGAGAGAACGAAGGAGGAAGGAGCTGTTTCGCAAAAAGAACAAGGCAGCAGCAGTCATCCAGCGCGCCTGGCGAAGCTACCAGCTCAGGAAGCACCTGTCCCACCTTCGGCATATGAAGCAGCTTGGAGCTGGAGATGTGGACAGATGGAGGCAAGAGTCTACAGCATTGCTCCTCCAGGTTTGGAGGAAGGAACTGGAACTAAAATTCCCCCAAACCACTGCAGTAAGCAAGGCCCCCAAGAGTCCATCCAAGGGCACCTCAGGCACAAAGTCCACCAAGCACTCAGTGCTTAAGCAAATCTATGGTTGTTCTCACGAAGGGAAAATACATCATCCTACAAGATCTGTAAAAGCCTCTTCTGTGCTGCGTCTCAACTCAGTGAGCAACCTACAGTGTATACATCTCCTTGAGAACAGTGGAAGATCAAAGAACTTTTCTTATAACCTGCAATCAGCTACTCAGCCAAAAAACAAAACAAAACCTTGA MSEDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQGNYRFMKLLLTRRANWMQKDLEEMTPLHLTTRHRSPKCLALLLKFMAPGEVDTQDKNKQTALHWSAYYNNPEHVKLLIKHDSNIGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPTESLLNWQDYEGRTPLHFAVADGNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQGATPLHYAAQSNFAETVKVFLKHPSVKDDSDLEGRTSFMWAAGKGSDDVLRTMLSLKSDIDINMADKYGGTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVDQDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNIQDKEGRTALHWSCNNGYLDAIKLLLDFAAFPNQMENNEERYTPLDYALLGERHEVIQFMLEHGALSIAAIQDIAAFKIQAVYKGYKVRKAFRDRKNLLMKHEQLRKDAAAKKREEENKRKEAEQQKGRRSPDSCRPQALPCLPSTQDVPSRQSRAPSKQPPAGNVAQGPEPRDSRGSPGGSLGGALQKEQHVSSDLQGTNSRRPNETAREHSKGQSACVHFRPNEGSDGSRHPGVPSVEKSRGETAGDERCAKGKGFVKQPSCIRVAGPDEKGEDSRRAAASLPPHDSHWKPSRRHDTEPKAKCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRNKVTQAKLTGGLYSHLPQSTEELRSGARRLETSTLSEDFQVSKETDPAPGPLSGQSVNIDLLPVELRLQIIQRERRRKELFRKKNKAAAVIQRAWRSYQLRKHLSHLRHMKQLGAGDVDRWRQESTALLLQVWRKELELKFPQTTAVSKAPKSPSKGTSGTKSTKHSVLKQIYGCSHEGKIHHPTRSVKASSVLRLNSVSNLQCIHLLENSGRSKNFSYNLQSATQPKNKTKP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31332 RAB11FIP3::FBRS ENSG00000090565.17::ENSG00000156860.16 LN18 SRR8615838 SRR8652090 CENTRAL_NERVOUS_SYSTEM glioma (astrocytoma_Grade_IV\, glioblastoma_multiforme) primary star-fusion TRUE TRUE TRUE 1508 FALSE NA FALSE NA RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:489000:+ chr16:475649-573011:+ chr16:539000:+ FBRS ENSG00000156860.16 protein_coding + + chr16:30658431-30670810:+ chr16:30666512:+ chr16:30669752-30682131:+ chr16:30677833:+ chr16:491097,chr16:491098 chr16:30666432,chr16:30666430 NA NA chr16:541097,chr16:541098 chr16:30677753,chr16:30677751 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EF-hand_7|206-263|2.7e-11^EF-hand_6|206-235|7.2e-07^EF-hand_1|207-230|1.5e-05^EF-hand_5|207-230|3.1e-05^EF-hand_8|208-232|0.00093^EF-hand_9|209-260|0.00016^EF-hand_8|237-261|0.00056^EF-hand_6|240-264|0.0098^EF-hand_1|246-264|0.021^EF-hand_5|252-259|1.6^Crescentin|457-584|5.8e-06^ZapB|469-509|0.12^WD40_alt|470-478|4.3^bZIP_1|488-509|0.42^PIN_12|513-615|0.0017^bZIP_1|537-576|0.0001^ZapB|540-586|0.00076^WD40_alt|540-559|0.27^EF-hand_7|542-556|7.9^RBD-FIP|543-559|2.2^bZIP_1|564-587|0.056^ZapB|569-629|0.00022^Crescentin|582-678|0.17^bZIP_1|610-631|2^RBD-FIP|620-635|1.9^WD40_alt|648-677|1.3e-05^bZIP_1|658-689|8.3e-05^PIN_12|658-726|0.015^ZapB|661-699|2.4e-05^RBD-FIP|662-678|7.4^EF-hand_7|714-736|0.49^EF-hand_6|715-725|3.3^EF-hand_1|715-726|1.4^RBD-FIP|716-756|3.3e-25 none ["DepMap2023"];INTRACHROMOSOMAL[chr16:30.14Mb] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1665 GT 1.7968 AG 1.7465 ENST00000262305.9 1-1265 ENST00000356166.11 1774-2943 chr16|+|[0]426007-426720[2]|[0]461404-461497[0]|[1]471295-471389[2]|[0]482525-482736[1]|[2]488851-489000[1]<==>chr16|+|[0]30666512-30666541[2]|[0]30666919-30666990[2]|[0]30667320-30667437[0]|[1]30667542-30667622[0]|[1]30668560-30668643[0]|[1]30668772-30668979[1]|[2]30669069-30669645[2] atggcgtcggccccgccggcctcgcccccgggctcggagccgccggggcccgacccggagccgggcgggccggacgggccgggggcggcacaactggctccgggccctgcggagctacgcctcggagcgcccgtcggcggccccgacccgcagtccccgggcctggatgagcctgcgcccggggccgctgcagatggcggggcgcgttggagcgccgggccggccccggggctggagggaggcccgcgagaccccgggccgtccgccccgccgccgcgctccggcccgcgggggcagcttgcgagccccgacgccccgggcccagggccgcgctccgaagcgccgcttccagaactcgacccgttgttctcctggactgaggagcccgaggagtgtggccccgcgagctgcccggagagcgcgcctttccgcttgcaggggtccagcagcagccaccgagcgcggggcgaggtcgacgtcttctctcccttccccgcgcccacggcgggcgagctggcgctggagcaaggtcccgggtccccgccgcagccctcggacctcagccagacccacccccttccgagcgagcccgtggggagtcaggaggacggcccccgcctccgagccgtgttcgatgccctggacggggatggggacggtttcgtccgcatcgaggacttcatccagtttgctacggtctacggggcagagcaggtgaaggacttaactaagtacttggatcccagtgggctcggcgtgatcagctttgaagacttctaccaagggatcacagccatcagaaacggagatcctgatggccagtgctacggtggtgtcgcttctgcccaagatgaggagcccctggcctgcccggacgagttcgatgacttcgtcacctatgaggccaacgaggtgacggacagcgcgtacatgggctccgagagcacctacagtgagtgtgagaccttcacggacgaggacaccagcaccctggtgcaccctgagctgcaacctgaaggggacgcagacagtgccggcggctcggccgtgccctctgagtgcctggacgccatggaggagcccgaccatggtgccctgctgctgctcccaggcaggcctcacccccatggccagtctgtcatcacggtgatcgggggcgaggagcactttgaggactacggtgaaggcagtgaggcggagctgtccccagagaccctatgcaacgggcagctgggctgcagtgaccccgctttcctcacgcccagATCCCCGACCATTTCCGGCCACCTTTGAGGAAACCAGGGAAGTGGTGTGCCATGCACGTGCGTGTGGCTTACATGATCCTGAGACACCAGGAGAAAATGAAGGGTGACTCCCACAAGCTTGACTTTCGGAATGACCTCCTGCCCTGCCTTCCGGGGCCCTATGGGGCCCTGCCCCCTGGGCAGGAGCTCTCCCACCCGGCCTCCCTCTTCACTGCGACTGGTGCCGTCCACGCTGCAGCCAACCCTTTCACGGCAGCTCCCGGGGCCCACGGACCCTTCCTGAGCCCCAGCACCCACATTGATCCCTTTGGGCGTCCCACAAGCTTCGCCTCTTTGGCTGCCCTCTCCAACGGGGCCTTTGGAGGCCTGGGCAGCCCCACATTCAACTCCGGCGCCGTCTTTGCCCAGAAAGAAAGCCCAGGGGCCCCACCAGCCTTCGCCTCCCCACCGGACCCATGGGGCCGCCTGCACCGCAGTCCTCTGACCTTTCCTGCCTGGGTCCGGCCCCCTGAGGCCGCCCGGACTCCAGGCTCAGACAAGGAGCGGCCTGTGGAGCGGAGGGAGCCCTCCATCACCAAGGAGGAGAAGGACAGGGACCTCCCCTTCTCACGGCCCCAGCTCCGAGTTTCTCCTGCTACTCCCAAGGCCCGGGCTGGTGAGGAGGGGCCTCGGCCAACCAAGGAATCTGTGCGGGTAAAGGAAGAGCGGAAGGAGGAGGCTGCCGCCGCCGCTGCCGCTGCTGCTGCCGCCGCCGCTGCCGCCGCCGCAGCAGCCACTGGGCCCCAGGGCCTTCACCTGCTGTTTGAGAGGCCCCGGCCGCCCCCGTTTCTGGGCCCTAGCCCACCAGATCGCTGTGCTGGCTTCCTGGAGCCAACCTGGTTGGCAGCACCCCCACGCCTGGCAAGGCCACCCCGCTTCTATGAGGCGGGTGAGGAGCTAACTGGACCCGGGGCCGTGGCCGCTGCCCGCCTCTACGGTCTGGAACCTGCTCACCCCTTGCTCTACAGCCGCTTGGCTCCTCCACCACCACCTGCTGCGGCCCCGGGAACCCCTCACCTTCTCAGCAAGACCCCACCGGGAGCCCTTTTGGGGGCACCACCTCCGCTTGTGCCCGCCCCCCGGCCCAGTTCCCCACCTAGGGGCCCTGGCCCAGCTCGGGCTGACAGGTGA MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELDPLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGSPPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVKDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEEPDHGALLLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAFLTPRSPTISGHL*GNQGSGVPCTCVWLT*S*DTRRK*RVTPTSLTFGMTSCPAFRGPMGPCPLGRSSPTRPPSSLRLVPSTLQPTLSRQLPGPTDPS*APAPTLIPLGVPQASPLWLPSPTGPLEAWAAPHSTPAPSLPRKKAQGPHQPSPPHRTHGAACTAVL*PFLPGSGPLRPPGLQAQTRSGLWSGGSPPSPRRRRTGTSPSHGPSSEFLLLLPRPGLVRRGLGQPRNLCG*RKSGRRRLPPPLPLLLPPPLPPPQQPLGPRAFTCCLRGPGRPRFWALAHQIAVLASWSQPGWQHPHAWQGHPASMRRVRS*LDPGPWPLPASTVWNLLTPCSTAAWLLHHHLLRPREPLTFSARPHREPFWGHHLRLCPPPGPVPHLGALAQLGLTG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31343 DHCR24::USP24 ENSG00000116133.13::ENSG00000162402.15 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1511 FALSE NA FALSE NA DHCR24 ENSG00000116133.13 protein_coding - - chr1:54849627-54887195:- chr1:54875942:- chr1:55315300-55352868:- chr1:55341615:- USP24 ENSG00000162402.15 protein_coding - - chr1:55066359-55215378:- chr1:55132700:- chr1:55532032-55681051:- chr1:55598373:- chr1:54875301,chr1:54875305 chr1:55134033,chr1:55134034 NA NA chr1:55340974,chr1:55340978 chr1:55599706,chr1:55599707 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FAD_binding_4|111-202|6.9e-19^Pam17|114-152|3.7e-05 none ["USP24:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.18Mb] 38 37 38 37 ONLY_REF_SPLICE YES_LDAS 0.8552 GT 1.9899 AG 1.9086 ENST00000436604.2 1-493 ENST00000294383.7 3382-7863 chr1|-|[0]54875942-54876047[0]|[2]54883618-54883773[0]|[2]54886889-54887119[0]<==>chr1|-|[2]55069045-55069107[0]|[2]55071814-55071924[0]|[2]55072317-55072403[0]|[2]55072786-55072861[2]|[1]55073828-55073906[1]|[0]55075457-55075523[0]|[2]55077235-55077300[0]|[2]55078538-55078651[0]|[2]55079538-55079659[1]|[0]55081322-55081424[0]|[2]55083272-55083364[0]|[2]55083772-55083888[0]|[2]55085942-55086038[2]|[1]55089627-55089740[2]|[1]55092023-55092126[0]|[2]55092821-55092916[0]|[2]55093937-55094087[2]|[1]55095255-55095396[1]|[0]55096498-55096622[2]|[1]55096952-55097172[0]|[2]55097598-55097717[0]|[2]55097943-55098084[2]|[1]55098476-55098558[0]|[2]55099771-55099869[0]|[2]55100839-55100964[0]|[2]55101584-55101703[0]|[2]55103876-55104020[2]|[1]55106146-55106263[1]|[0]55107239-55107430[1]|[0]55110185-55110246[2]|[1]55120596-55120756[0]|[2]55121436-55121506[1]|[0]55123447-55123602[1]|[0]55124469-55124628[0]|[2]55125320-55125548[2]|[1]55125663-55125758[2]|[1]55129477-55129574[0]|[2]55132545-55132700[0] atggagcccgccgtgtcgctggccgtgtgcgcgctgctcttcctgctgtgggtgcgcctgaaggggctggagttcgtgctcatccaccagcgctgggtgttcgtgtgcctcttcctcctgccgctctcgcttatcttcgatatctactactacgtgcgcgcctgggtggtgttcaagctcagcagcgctccgcgcctgcacgagcagcgcgtgcgggacatccagaagcaggtgcgggaatggaaggagcagggtagcaagaccttcatgtgcacggggcgccctggctggctcactgtctcactacgtgtcgggaagtacaagaagacacacaaaaacatcatgatcaacctgatggacattctggaagtggacaccaagaaacagattgtccgtgtggagcccttggtgaccatgggccaggtgactgccctgctgacctccattggctggactctccccgtgttgcctgagcttgatgacctcacagtggAAAACATTGCTGTCTGAATCAAGTTCTCAGTCCTCAAAATCTCCATCCCTGTCATCAAAGCAACAGCACCAGCCAAGTGCCAGTTCAATTTTAGAAAGTCTGTTTCGATCTTTTGCCCCGGGAATGTCTACCTTCAGAGTGCTCTACAACTTAGAAGTTCTAAGCTCCAAACTCATGCCAACAGCTGATGATGACATGGCCAGAAGCTGTGCCAAATCCTTCTGTGAAAACTTCCTCAAAGCTGGCGGTTTGAGTTTGGTTGTAAATGTCATGCAGAGAGACTCCATCCCATCAGAAGTAGACTATGAAACAAGGCAGGGTGTTTATTCCATCTGTCTACAGCTTGCAAGATTTTTACTTGTCGGACAAACAATGCCCACGTTATTAGATGAAGACCTCACCAAAGATGGTATAGAAGCACTTTCTTCCCGCCCATTCCGAAATGTCAGCCGGCAGACAAGCAGACAGATGTCCTTATGTGGTACCCCAGAAAAGTCATCCTACCGACAGTTGTCCGTGTCTGATAGGTCTTCTATTAGGGTTGAGGAAATCATCCCTGCTGCTCGAGTTGCAATACAAACAATGGAAGTAAGTGATTTCACTTCTACTGTGGCTTGCTTCATGAGATTGTCATGGGCTGCGGCTGCAGGACGGCTTGATCTTGTTGGGAGTAGCCAGCCAATTAAAGAAAGTAATTCCCTGTGTCCTGCTGGAATTCGAAACAGACTCAGCAGTTCAGGAAGCAATTGCAGCTCTGGAAGTGAAGGAGAACCAGTAGCCCTGCATGCGGGAATCTGTGTTCGACAACAGTCTGTATCCACCAAAGACTCGCTGATTGCGGGAGAGGCTTTGTCTCTTCTTGTTACGTGCCTACAGCTTCGGAGCCAGCAACTGGCATCTTTCTATAACTTGCCCTGTGTTGCTGATTTCATCATTGATATTCTGCTCGGATCACCAAGTGCTGAGATTCGCCGGGTTGCCTGTGATCAGCTGTACACTCTTAGTCAGACAGACACATCAGCGCATCCAGATGTGCAGAAGCCAAATCAGTTTCTTCTAGGCGTAATCCTCACGGCTCAGCTGCCTCTCTGGTCTCCAACTAGTATTATGAGAGGAGTCAATCAGAGACTGTTATCTCAGTGTATGGAGTATTTTGATTTGAGATGCCAGTTATTAGATGATCTGACAACTTCAGAAATGGAGCAGTTAAGGATCAGCCCAGCTACGATGCTTGAAGATGAGATTACTTGGCTGGATAACTTTGAACCTAATCGTACAGCTGAATGTGAGACCAGTGAAGCGGACAACATCTTACTGGCAGGGCACTTACGCCTCATCAAGACCCTTCTTTCACTCTGTGGGGCAGAAAAGGAAATGCTTGGTTCATCACTCATTAAACCATTGTTAGATGACTTCCTTTTCCGAGCTTCTAGAATTATTTTAAATAGTCATTCTCCAGCTGGCAGTGCCGCCATCAGTCAACAGGACTTTCATCCAAAGTGTAGTACAGCGAATAGCCGATTGGCAGCCTATGAAGTCCTTGTGATGTTGGCTGATAGTTCACCTTCAAATCTTCAAATTATTATAAAAGAACTGCTTTCTATGCATCACCAGCCTGACCCTGCTCTTACCAAGGAGTTTGATTACCTTCCCCCAGTGGATAGCAGGTCCAGTTCAGGGTTTGTGGGGCTGAGAAATGGTGGTGCAACTTGTTATATGAATGCAGTCTTCCAGCAGCTGTATATGCAACCTGGGCTCCCTGAGTCATTACTTTCAGTGGATGATGACACAGACAATCCAGATGATAGCGTGTTTTACCAAGTGCAGTCTCTCTTTGGACATTTAATGGAAAGCAAGCTGCAGTACTATGTACCTGAGAATTTTTGGAAGATTTTCAAGATGTGGAATAAAGAACTTTATGTGAGAGAACAGCAGGATGCATATGAATTCTTTACTAGTCTCATTGATCAGATGGATGAATACCTCAAGAAAATGGGGAGAGACCAAATTTTTAAGAATACATTTCAGGGCATCTACTCTGATCAGAAGATCTGTAAAGACTGTCCTCACAGATATGAGCGTGAAGAAGCTTTCATGGCTCTCAATCTAGGAGTGACTTCTTGTCAGAGTTTGGAAATTTCTTTGGACCAATTTGTTAGAGGAGAAGTTCTAGAAGGAAGTAATGCGTACTACTGTGAAAAGTGTAAAGAAAAGAGAATAACAGTGAAAAGGACCTGTATTAAATCTTTACCTAGCGTCTTGGTAATTCACCTAATGAGATTTGGGTTTGACTGGGAAAGCGGACGCTCCATTAAATATGATGAACAAATAAGGTTTCCCTGGATGCTAAACATGGAGCCTTACACAGTTTCAGGAATGGCTCGCCAAGATTCTTCTTCTGAAGTTGGGGAAAATGGGCGAAGTGTGGATCAGGGCGGTGGAGGATCCCCACGAAAAAAGGTTGCCCTCACAGAAAACTATGAACTTGTCGGTGTCATCGTACACAGTGGGCAGGCACACGCAGGCCACTACTATTCCTTCATTAAGGACAGGCGAGGGTGTGGAAAAGGAAAGTGGTATAAATTTAATGACACAGTTATAGAAGAATTTGACCTAAATGACGAGACCCTGGAGTATGAATGCTTTGGAGGAGAATATAGACCAAAAGTTTATGATCAAACAAACCCATACACTGATGTGCGCCGAAGATACTGGAATGCCTATATGCTTTTCTACCAAAGGGTGTCTGATCAGAACTCCCCAGTATTACCAAAGAAAAGTCGAGTCAGCGTTGTACGGCAGGAAGCTGAGGATCTCTCTCTGTCAGCTCCATCTTCACCAGAAATTTCACCTCAGTCATCCCCTCGGCCCCATAGGCCGAACAATGACCGGCTGTCTATTCTTACCAAGCTGGTTAAAAAAGGCGAGAAGAAAGGACTGTTTGTGGAGAAAATGCCTGCTCGAATATACCAGATGGTGAGAGATGAGAACCTCAAGTTTATGAAGAATAGAGATGTATACAGTAGTGATTATTTCAGTTTTGTTTTGTCTTTAGCTTCATTGAATGCTACTAAATTAAAGCATCCATATTATCCTTGCATGGCAAAGGTGAGCTTACAGCTTGCTATTCAATTCCTTTTTCAAACTTATCTACGGACAAAGAAGAAACTCAGGGTTGATACTGAAGAATGGATTGCTACCATTGAAGCATTGCTTTCAAAAAGTTTTGATGCTTGTCAGTGGTTAGTTGAATATTTTATTAGTTCTGAAGGACGAGAATTGATAAAGATTTTCTTACTGGAGTGCAATGTGAGAGAAGTACGAGTTGCTGTGGCCACCATTCTGGAGAAAACCCTAGACAGTGCCTTGTTTTATCAGGATAAGTTAAAAAGCCTTCATCAGTTACTGGAGGTACTACTTGCTCTGTTGGACAAAGACGTCCCAGAAAATTGTAAAAACTGTGCTCAGTACTTTTTCCTGTTCAACACTTTTGTACAAAAGCAAGGAATTAGGGCTGGAGATCTTCTTCTGAGGCATTCAGCTCTGCGGCACATGATCAGCTTCCTCCTAGGGGCCAGTCGGCAAAACAATCAGATACGTCGATGGAGTTCAGCACAAGCACGAGAATTTGGGAATCTTCACAATACAGTGGCGTTACTTGTTTTGCATTCAGATGTCTCATCCCAAAGGAATGTTGCTCCTGGCATATTTAAGCAACGACCACCCATTAGCATTGCTCCCTCAAGCCCTCTGTTGCCCCTCCATGAGGAGGTAGAAGCCTTGTTGTTCATGTCTGAAGGGAAACCTTACCTGTTAGAGGTAATGTTTGCTTTGCGGGAGCTGACAGGCTCGCTCTTGGCACTCATTGAGATGGTAGTGTACTGCTGTTTCTGTAATGAGCATTTTTCCTTCACAATGCTGCATTTCATTAAGAACCAACTAGAAACGGCTCCACCTCATGAGTTAAAGAATACGTTCCAACTACTTCATGAAATATTGGTTATTGAAGATCCTATACAAGTAGAGCGAGTCAAATTTGTGTTTGAGACAGAAAATGGATTACTAGCTTTGATGCACCACAGTAATCATGTGGACAGTAGTCGCTGCTACCAGTGTGTCAAATTTCTTGTCACTCTTGCTCAAAAGTGTCCTGCAGCTAAGGAGTACTTCAAGGAGAATTCCCACCACTGGAGCTGGGCTGTGCAGTGGCTACAGAAGAAGATGTCAGAACATTACTGGACACCACAGAGTAATGTCTCTAATGAAACATCAACTGGAAAAACCTTTCAGCGAACCATTTCAGCTCAGGACACGTTAGCGTATGCCACAGCTTTGTTGAATGAAAAAGAGCAATCAGGAAGCAGTAATGGGTCGGAGAGTAGTCCTGCCAATGAGAACGGAGACAGGCATCTACAGCAGGGTTCAGAATCTCCCATGATGATTGGTGAGTTGAGAAGTGACCTTGATGATGTTGATCCCTAG MEPAVSLAVCALLFLLWVRLKGLEFVLIHQRWVFVCLFLLPLSLIFDIYYYVRAWVVFKLSSAPRLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYKKTHKNIMINLMDILEVDTKKQIVRVEPLVTMGQVTALLTSIGWTLPVLPELDDLTVENIAV*IKFSVLKISIPVIKATAPAKCQFNFRKSVSIFCPGNVYLQSALQLRSSKLQTHANS***HGQKLCQILL*KLPQSWRFEFGCKCHAERLHPIRSRL*NKAGCLFHLSTACKIFTCRTNNAHVIR*RPHQRWYRSTFFPPIPKCQPADKQTDVLMWYPRKVILPTVVRV**VFY*G*GNHPCCSSCNTNNGSK*FHFYCGLLHEIVMGCGCRTA*SCWE*PAN*RK*FPVSCWNSKQTQQFRKQLQLWK*RRTSSPACGNLCSTTVCIHQRLADCGRGFVSSCYVPTASEPATGIFL*LALCC*FHH*YSARITKC*DSPGCL*SAVHS*SDRHISASRCAEAKSVSSRRNPHGSAASLVSN*YYERSQSETVISVYGVF*FEMPVIR*SDNFRNGAVKDQPSYDA*R*DYLAG*L*T*SYS*M*DQ*SGQHLTGRALTPHQDPSFTLWGRKGNAWFITH*TIVR*LPFPSF*NYFK*SFSSWQCRHQSTGLSSKV*YSE*PIGSL*SPCDVG**FTFKSSNYYKRTAFYASPA*PCSYQGV*LPSPSG*QVQFRVCGAEKWWCNLLYECSLPAAVYATWAP*VITFSG**HRQSR**RVLPSAVSLWTFNGKQAAVLCT*EFLEDFQDVE*RTLCERTAGCI*ILY*SH*SDG*IPQENGERPNF*EYISGHLL*SEDL*RLSSQI*A*RSFHGSQSRSDFLSEFGNFFGPIC*RRSSRRK*CVLL*KV*RKENNSEKDLY*IFT*RLGNSPNEIWV*LGKRTLH*I**TNKVSLDAKHGALHSFRNGSPRFFF*SWGKWAKCGSGRWRIPTKKGCPHRKL*TCRCHRTQWAGTRRPLLFLH*GQARVWKRKVV*I**HSYRRI*PK*RDPGV*MLWRRI*TKSL*SNKPIH*CAPKILECLYAFLPKGV*SELPSITKEKSSQRCTAGS*GSLSVSSIFTRNFTSVIPSAP*AEQ*PAVYSYQAG*KRREERTVCGENACSNIPDGER*EPQVYEE*RCIQ**LFQFCFVFSFIECY*IKASILSLHGKGELTACYSIPFSNLSTDKEETQG*Y*RMDCYH*SIAFKKF*CLSVVS*IFY*F*RTRIDKDFLTGVQCERSTSCCGHHSGENPRQCLVLSG*VKKPSSVTGGTTCSVGQRRPRKL*KLCSVLFPVQHFCTKARN*GWRSSSEAFSSAAHDQLPPRGQSAKQSDTSMEFSTSTRIWESSQYSGVTCFAFRCLIPKECCSWHI*ATTTH*HCSLKPSVAPP*GGRSLVVHV*RETLPVRGNVCFAGADRLALGTH*DGSVLLFL**AFFLHNAAFH*EPTRNGSTS*VKEYVPTTS*NIGY*RSYTSRASQICV*DRKWITSFDAPQ*SCGQ*SLLPVCQISCHSCSKVSCS*GVLQGEFPPLELGCAVATEEDVRTLLDTTE*CL**NINWKNLSANHFSSGHVSVCHSFVE*KRAIRKQ*WVGE*SCQ*ERRQASTAGFRISHDDW*VEK*P**C*SL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31344 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1510 FALSE NA FALSE NA THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71141556:+ chr15:71389291-72075722:+ chr15:71433895:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:70980101:+ chr15:71145578-71345997:+ chr15:71272440:+ chr15:71151625,chr15:71151626 chr15:70977829,chr15:70977827 NA NA chr15:71443964,chr15:71443965 chr15:71270168,chr15:71270166 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none DUF2630-PARTIAL|~40-73|0.00013^FTH|147-230|4.3e-06^LRR_9|154-234|3e-06^FTH|322-343|0.36^DUF2630|336-352|1.4 ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr15:0.04Mb];LOCAL_REARRANGEMENT:+:[43295] 36 40 36 40 ONLY_REF_SPLICE YES_LDAS 0.8666 GT 1.9329 AG 1.5628 ENST00000355327.7 1-29 ENST00000560691.5 40-1179 chr15|+|[0]71141528-71141556[1]<==>chr15|+|[0]70980101-70980184[2]|[0]70984094-70984257[1]|[2]71008379-71008616[2]|[0]71009807-71009992[2]|[0]71012804-71012913[1]|[2]71037179-71037332[2]|[0]71049409-71049612[2] atggtttcccatttcatggggtctctcagGAAGAAGAAAGGCGTATGGCATCTGTTTTAGCCAAAAAAGAGGAAGAGAAGAAGCGGGAAAGTCATAAACAATCTTTGCTTAAGGAGAAGAAAAGGTTAACAATTAACAACGTAGCTCGACAGTGGGACTTGCAACAACAACGAGTAGCCAATATTGCTACAAATGAAGATAGAAAAGATTCTGACTCTCCTCAGGACCCCTGTCAGATTGATGGAAGCACCCTCTCTGCATTCCCAGAGGAAACAGGGCCTCTAGACTCAGGACTCAACAATGCTTTACAAGGTTTATCTGTCATAGACACATACCTTGTTGAAGTGGACGGGGATACACTTTCCCTATATGGCTCAGGAGCACTGGAATCTCTGGATAGGAATTGGAGTGTTCAAACAGCAGGAATGATCACAACAGTCTCCTTCACTTTCATAGAATTTGATGAAATCGTCCAAGTGCTTCCTAAACTGAAGATTAAGTTTCCTAATTCTCTGCACCTTAAATTCAAGGAAACAAATCTTGTAATGCTGCAGCAATTTAACGCACTAGCCCAACTCCGTCGTATTGACCAGTTGACAATTGATCCTCAAGGAAATCCAGTTGTCAATTTTACACTCTGGAAATACTATGTACTGTTTAGGCTAAGCCATTTCAGTATGCAGAAAATAAATGGAACAGAGGTGACACAGAATGATATGATAATGGCTGAAAGGCTCTTTGGAATCCTAGCACATGTAGCATCTTCTGAGTTACCCCAGTATCGTCTGATTTCCATTCTGGGTGATGCCAGGAAAAAGCAATTTCGGTATCTACTAGAATCCAAAGGAAAAAAACCTGGTATTATCAACGAAGAAAATAATGACAGCAAAAGACTTGTAGGAGAAAACACAAATCGTGCTACATTAAATTATACTACAAGAGACTTTTATAATGAAAAGCTAGAGGAAATAAAGGAAAAGAAGAAATTCTGTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATGAAAAATGAGGCTTTGCAGAAGCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATTCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAA MVSHFMGSLRKKKGVWHLF*PKKRKRRSGKVINNLCLRRRKG*QLTT*LDSGTCNNNE*PILLQMKIEKILTLLRTPVRLMEAPSLHSQRKQGL*TQDSTMLYKVYLS*THTLLKWTGIHFPYMAQEHWNLWIGIGVFKQQE*SQQSPSLS*NLMKSSKCFLN*RLSFLILCTLNSRKQIL*CCSNLTH*PNSVVLTS*QLILKEIQLSILHSGNTMYCLG*AISVCRK*MEQR*HRMI**WLKGSLES*HM*HLLSYPSIV*FPFWVMPGKSNFGIY*NPKEKNLVLSTKKIMTAKDL*EKTQIVLH*IILQETFIMKS*RK*RKRRNSVKHI*KTL*RKPQKST*KMRLCRSFGHRCSLSLLGMQS*KFAIKIPI*SSAYSR*QTKN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|TRUE|FALSE,FALSE|FALSE|TRUE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,TRUE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31356 PSD3::ENSG00000253557 ENSG00000156011.19::ENSG00000253557.6 IM95 SRR8615841 SRR8652062 STOMACH carcinoma (intestinal_adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- ENSG00000253557 ENSG00000253557.6 lncRNA - - chr8:19084992-19259469:- chr8:19085078:- chr8:18942502-19116979:- chr8:18942588:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 4 7 3.11 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.4566 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31361 TBL1X::WWC3 ENSG00000101849.18::ENSG00000047644.20 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1512 FALSE NA FALSE NA TBL1X ENSG00000101849.18 protein_coding + + chrX:9463320-9741037:+ chrX:9654322:+ chrX:9431360-9709077:+ chrX:9622362:+ WWC3 ENSG00000047644.20 protein_coding + + chrX:10015254-10144474:+ chrX:10090771:+ chrX:9983294-10112514:+ chrX:10058811:+ chrX:9673810,chrX:9673809 chrX:10082545,chrX:10082541 NA NA chrX:9641850,chrX:9641849 chrX:10050585,chrX:10050581 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LisH|57-83|3e-12^K_channel_TID|150-188|6.4e-06^Shadoo|158-207|0.00012 PI3K_C2|758-855|1.3e-05^NT-C2|790-840|3.1e-05^DUF1963|904-978|0.26 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.30Mb] 71 21 71 21 ONLY_REF_SPLICE YES_LDAS 1.0405 GT 1.9899 AG 1.8256 ENST00000407597.7 1-211 ENST00000380861.10 750-3651 chrX|+|[0]9653587-9653689[0]|[1]9654215-9654322[0]<==>chrX|+|[2]10090771-10090900[2]|[0]10094132-10094281[2]|[0]10098506-10098579[1]|[2]10109778-10110020[1]|[2]10116418-10116507[1]|[2]10117124-10117689[0]|[1]10122619-10122739[1]|[2]10124265-10124339[1]|[2]10125024-10125110[1]|[2]10126114-10126306[2]|[0]10127988-10128161[2]|[0]10128557-10128708[1]|[2]10129956-10130121[2]|[0]10134432-10134596[2]|[0]10136633-10136725[2]|[0]10138709-10138936[2]|[0]10139413-10139540[1]|[2]10141435-10141501[2] atgaccgagctcgctggcgcctcttcatcgtgctgccaccgccctgcaggaagaggggccatgcagtcagtcttgcaccactttcaacgtttgcgagggagagagggtggttcccacttcatcaacacctcatcgccgcgaggtgaggctaagatgagcataaccagtgacgaggtgaactttctggtgtatcggtatctccaggagtcagGATTGATCGGAAGATGTCAAGTACTCACACCAGCTACAAACTGGATGAGGCGCAGGCTATCATGAGTGAGCTCCGGACCATCAAGAAGGCCATTTGCACAGGCGAGAAGGAGAGGCGGGACCTGATGCATAGCCTGGCCAAGCTGACCGATAGCTTCAAGAACAGCTGCTCCGTTACCGACTCTCTAGTGGACTTCCCTCACCATGTAGGCGTGCCTGGCGATGCTGGTGTACCCCAGCAGTTCTGCGATGCCGGCTCCCAGACTGATATCATCGGGGAGTTTGTCTTTGATGATAAAACAAGACTTGTAGACCGAGTCAGACTTAATTGGCAATATGAAGAAGCCAGAAAGAGAGTCGCCAACATCCAGCAGCAGCTGGCCCGGCTTGACAATGAGTCCTGGCCAAGCACGGCCGAGGCTGACAGGGACCGGCTGCAGCTCATCAAGGAGAAGGAGGCCCTGCTGCAGGAGCTTCAGCTCATCATTGCACAGCGCCGCTCTGCGGGAGATGTGGCCCGGCTGGAGGAGGAGCGGGAGCGCCTAGAGGAGGAGCTGCGGCGTGCACGGGCCACCTCCGCACAGGGCGCCACGGAGAGGATTCTGCTTCAGGAAAAAAGGAATTGTCTACTTATGCAGCTGGAAGAAGCCACCCGCTTAACATCCTACCTCCAGTCCCAGTTAAAAAGCCTGTGTGCCAGCACCCTGACGGTGTCCTCGGGGAGCAGCCGCGGGTCCCTAGCCTCCAGCCGTGGGTCTCTGGCCTCCAGCCGGGGCTCCCTGAGCTCGGTCAGCTTCACGGACATCTACGGCCTCCCGCAGTACGAGAAGCCCGACGCTGAGGGCAGCCAGCTTCTACGCTTCGACCTCATTCCCTTCGACTCTCTGGGGCGAGATGCTCCCTTTTCAGAGCCCCCAGGCCCCTCGGGCTTCCACAAGCAGAGGCGGTCCCTGGACACGCCCCAGTCCCTGGCATCGCTGTCCTCCCGCTCCTCGCTGTCCTCGCTGTCGCCCCCAAGCTCGCCCCTGGACACGCCCTTCCTCCCTGCCTCACGGGACTCGCCGCTGGCGCAGCTGGCGGACAGCTGTGAGGGGCCAGGCCTGGGCGCCCTAGACAGACTGCGGGCACACGCCTCGGCTATGGGGGACGAAGACTTACCAGGCATGGCGGCCCTTCAGCCACACGGGGTCCCCGGGGATGGGGAAGGGCCGCACGAGCGAGGACCCCCACCAGCCAGCGCTCCCGTGGGTGGAACAGTGACTCTTCGAGAAGACAGTGCCAAGAGGTTGGAGAGGAGGGCACGCCGCATCTCCGCATGTCTGTCGGATTATTCGCTAGCCAGCGACAGTGGGGTGTTTGAACCTCTAACCAAAAGGAACGAAGATGCCGAGGAGCCTGCCTACGGAGACACGGCCAGTAACGGAGATCCCCAGATCCACGTGGGACTCCTGCGCGACAGTGGCAGCGAGTGTCTCCTCGTGCACGTGCTGCAGCTGAAGAACCCGGCGGGGCTGGCGGTGAAGGAAGACTGCAAAGTCCACATCCGAGTCTATTTGCCCCCACTGGACTCGGGCACGCCCAACACTTACTGCTCCAAGGCTCTGGAGTTCCAAGTGCCGCTGGTGTTTAACGAAGTGTTCAGAATCCCCGTGCATTCCAGCGCGTTGACACTGAAGTCACTTCAGTTATACGTGTGTTCAGTGACTCCGCAGCTGCAGGAAGAACTGCTGGGCATTGCTCAGATTAACCTGGCTGACTATGACAGTTTGAGTGAGATGCAGCTGCGCTGGCATTCCGTGCAGGTGTTCACCAGCTCTGAACCATCAAGGACGCGGGAGGCTGGGTGTGCAGGAGAGAGCTCCGCCCGGGACCCTGCACACACCATCTCCATCTCCGGCAAGACGGATGCGGTGACGGTGCTCCTGGCCAGAACCACGGCACAGCTGCAGGCGGTGGAGAGGGAACTGGCCGAGGAGCGGGCCAAGCTGGAGTACACGGAGGAGGAGGTCCTGGAGATGGAGCGCAAGGAGGAGCAGGCCGAGGCCATATCCGAGCGGAGTTGGCAAGCGGACTCGGTGGATAGCGGCTGTAGCAACTGCACCCAGACCAGCCCTCCGTACCCAGAGCCCTGTTGCATGGGTATCGACTCCATCCTGGGCCACCCATTTGCTGCTCAGGCAGGGCCTTACAGCCCCGAGAAATTTCAGCCCTCGCCTCTTAAGGTTGATAAGGAAACCAACACGGAAGATCTCTTTCTGGAAGAAGCAGCCAGCCTCGTGAAGGAGCGGCCCAGCCGCCGGGCCCGAGGGTCGCCTTTTGTTCGGAGTGGCACGATTGTCCGTTCCCAGACATTCTCGCCTGGAGCACGAAGCCAGTATGTTTGCAGACTTTATCGTAGTGACAGCGACAGTTCAACGCTGCCCCGGAAGTCCCCCTTTGTCCGAAATACTTTGGAAAGACGAACCCTTCGCTATAAGCAGTCATGCAGGTCTTCCCTGGCTGAGCTCATGGCCCGCACCTCCCTGGACTTGGAGCTGGATCTCCAGGCGTCGAGAACACGGCAGAGGCAGCTGAATGAGGAGCTCTGCGCCCTCCGTGAGCTGCGGCAGCGGTTGGAGGACGCCCAGCTCCGTGGCCAGACTGACCTCCCACCCTGGGTGCTTCGGGACGAGCGGCTCCGTGGCCTGCTGCGGGAGGCCGAGCGGCAGACAAGACAGACCAAACTTGACTACCGTCATGAGCAGGCGGCTGAGAAGATGCTGAAGAAGGCCTCCAAGGAGATCTACCAGCTGCGTGGGCAGAGCCACAAAGAGCCCATCCAAGTGCAGACCTTTAGGGAGAAGATAGCATTCTTCACAAGGCCAAGGATCAACATACCTCCTCTCCCAGCCGACGACGTCTGA MTELAGASSSCCHRPAGRGAMQSVLHHFQRLRGREGGSHFINTSSPRGEAKMSITSDEVNFLVYRYLQESGLIGRCQVLTPATNWMRRRLS*VSSGPSRRPFAQARRRGGT*CIAWPS*PIASRTAAPLPTL*WTSLTM*ACLAMLVYPSSSAMPAPRLISSGSLSLMIKQDL*TESDLIGNMKKPERESPTSSSSWPGLTMSPGQARPRLTGTGCSSSRRRRPCCRSFSSSLHSAALREMWPGWRRSGSA*RRSCGVHGPPPHRAPRRGFCFRKKGIVYLCSWKKPPA*HPTSSPS*KACVPAP*RCPRGAAAGP*PPAVGLWPPAGAP*ARSASRTSTASRSTRSPTLRAASFYASTSFPSTLWGEMLPFQSPQAPRASTSRGGPWTRPSPWHRCPPAPRCPRCRPQARPWTRPSSLPHGTRRWRSWRTAVRGQAWAP*TDCGHTPRLWGTKTYQAWRPFSHTGSPGMGKGRTSEDPHQPALPWVEQ*LFEKTVPRGWRGGHAASPHVCRIIR*PATVGCLNL*PKGTKMPRSLPTETRPVTEIPRSTWDSCATVAASVSSCTCCS*RTRRGWR*RKTAKSTSESICPHWTRARPTLTAPRLWSSKCRWCLTKCSESPCIPAR*H*SHFSYTCVQ*LRSCRKNCWALLRLTWLTMTV*VRCSCAGIPCRCSPALNHQGRGRLGVQERAPPGTLHTPSPSPARRMR*RCSWPEPRHSCRRWRGNWPRSGPSWSTRRRRSWRWSARRSRPRPYPSGVGKRTRWIAAVATAPRPALRTQSPVAWVSTPSWATHLLLRQGLTAPRNFSPRLLRLIRKPTRKISFWKKQPAS*RSGPAAGPEGRLLFGVARLSVPRHSRLEHEASMFADFIVVTATVQRCPGSPPLSEILWKDEPFAISSHAGLPWLSSWPAPPWTWSWISRRREHGRGS*MRSSAPSVSCGSGWRTPSSVARLTSHPGCFGTSGSVACCGRPSGRQDRPNLTTVMSRRLRRC*RRPPRRSTSCVGRATKSPSKCRPLGRR*HSSQGQGSTYLLSQPTTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31362 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1514 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29929938:- chr17:27952956-28257294:- chr17:28256956:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1218417:+ chr19:1177557-1228430:+ chr19:1218416:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Pkinase-PARTIAL|~291-309|2e-61^PK_Tyr_Ser-Thr-PARTIAL|~291-305|2.8e-38^Kinase-like-PARTIAL|~291-297|1.5e-13^APH|308-348|1 ["STK11:ArcherDX_panel","STK11:OncomapV4_panel","STK11:Oncogene","STK11:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr19] 34 12 34 5.23 ONLY_REF_SPLICE YES_LDAS 0.4437 GT 1.6402 AG 1.8892 ENST00000540801.6 1-63 ENST00000326873.12 291-1302 chr17|-|[2]29929938-29930000[0]<==>chr19|+|[2]1218417-1218500[1]|[2]1219324-1219413[1]|[2]1220373-1220505[2]|[0]1220581-1220717[1]|[2]1221213-1221340[0]|[1]1221949-1222006[1]|[2]1222985-1223172[0]|[1]1226454-1226647[2] atggctttggtcacggtccagcggtcacctacccccagcaccacctccagcccctgcgcctcgGGAAATTCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGAAAATGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTGTGCCAGGCCCACGGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGCACTGCACCCGTTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTGGACACCTTCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTCACCCTCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGGATGCTTGAGTACGAACCGGCCAAGAGGTTCTCCATCCGGCAGATCCGGCAGCACAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGCCCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGACAGGTCCCAGAAGAGGAGGCCAGTCACAATGGACAGCGCCGGGGCCTCCCCAAGGCCGTGTGTATGAACGGCACAGAGGCGGCGCAGCTGAGCACCAAATCCAGGGCGGAGGGCCGGGCCCCCAACCCTGCCCGCAAGGCCTGCTCCGCCAGCAGCAAGATCCGCCGGCTGTCGGCCTGCAAGCAGCAGTGA MALVTVQRSPTPSTTSSPCASGNSTTEEVTAQKCHPAGGCVIQRREAENVYGDGVLRVWHAGNAGQRAGEAFPSVPGPRVLLSAD*RPGVPA*PGHCAQGHQAGEPAAHHRWHPQNLRPGRGRGTAPVRGGRHLPDQPGLPGFPAARDCQRPGHLLRLQGGHLVGWGHPLQHHHGSVPLRRGQHLQVV*EHREGELRHPGRLWPPAL*PAERDA*VRTGQEVLHPADPAAQLVPEETSSG*STSAHPTEPRHQGPVAQHDCGAVLGGPARRGRGRGPLRHRG*HHLHSGLHGARTGPRRGGQSQWTAPGPPQGRVYERHRGGAAEHQIQGGGPGPQPCPQGLLRQQQDPPAVGLQAAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 31363 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1513 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29848849:- chr17:27952956-28257294:- chr17:28175867:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1218417:+ chr19:1177557-1228430:+ chr19:1218416:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Pkinase-PARTIAL|~291-309|2e-61^PK_Tyr_Ser-Thr-PARTIAL|~291-305|2.8e-38^Kinase-like-PARTIAL|~291-297|1.5e-13^APH|308-348|1 ["STK11:ArcherDX_panel","STK11:OncomapV4_panel","STK11:Oncogene","STK11:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr19] 28 22 28 13.81 ONLY_REF_SPLICE YES_LDAS 0.4729 GT 1.7465 AG 1.8892 ENST00000540801.6 1-144 ENST00000326873.12 291-1302 chr17|-|[2]29848849-29848929[0]|[2]29929938-29930000[0]<==>chr19|+|[2]1218417-1218500[1]|[2]1219324-1219413[1]|[2]1220373-1220505[2]|[0]1220581-1220717[1]|[2]1221213-1221340[0]|[1]1221949-1222006[1]|[2]1222985-1223172[0]|[1]1226454-1226647[2] atggctttggtcacggtccagcggtcacctacccccagcaccacctccagcccctgcgcctcgagctctcatttggaagacagtgaatcagcagcattactttgctgtgaatgtgaagaatcagaaatctttactgattccaatGGAAATTCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGAAAATGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTCCCAGTGTGCCAGGCCCACGGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGTGCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGGCCGAGGCACTGCACCCGTTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCCGAGATTGCCAACGGCCTGGACACCTTCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTCACCCTCTACAACATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAGCTACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGGATGCTTGAGTACGAACCGGCCAAGAGGTTCTCCATCCGGCAGATCCGGCAGCACAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGCCCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCACGGCGCGGACGAGGACGAGGACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCACGGTGCCCGGACAGGTCCCAGAAGAGGAGGCCAGTCACAATGGACAGCGCCGGGGCCTCCCCAAGGCCGTGTGTATGAACGGCACAGAGGCGGCGCAGCTGAGCACCAAATCCAGGGCGGAGGGCCGGGCCCCCAACCCTGCCCGCAAGGCCTGCTCCGCCAGCAGCAAGATCCGCCGGCTGTCGGCCTGCAAGCAGCAGTGA MALVTVQRSPTPSTTSSPCASSSHLEDSESAALLCCECEESEIFTDSNGNSTTEEVTAQKCHPAGGCVIQRREAENVYGDGVLRVWHAGNAGQRAGEAFPSVPGPRVLLSAD*RPGVPA*PGHCAQGHQAGEPAAHHRWHPQNLRPGRGRGTAPVRGGRHLPDQPGLPGFPAARDCQRPGHLLRLQGGHLVGWGHPLQHHHGSVPLRRGQHLQVV*EHREGELRHPGRLWPPAL*PAERDA*VRTGQEVLHPADPAAQLVPEETSSG*STSAHPTEPRHQGPVAQHDCGAVLGGPARRGRGRGPLRHRG*HHLHSGLHGARTGPRRGGQSQWTAPGPPQGRVYERHRGGAAEHQIQGGGPGPQPCPQGLLRQQQDPPAVGLQAAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 31366 ERC1::WNT5B ENSG00000082805.21::ENSG00000111186.13 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1190052:+ chr12:1099675-1605099:+ chr12:1299218:+ WNT5B ENSG00000111186.13 protein_coding + + chr12:1529891-1647212:+ chr12:1631298:+ chr12:1639057-1756378:+ chr12:1740464:+ chr12:1227256,chr12:1227249 chr12:1624629,chr12:1624619 NA NA chr12:1336422,chr12:1336415 chr12:1733795,chr12:1733785 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERC1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.03Mb];NEIGHBORS[33958] 10 4 10 4 ONLY_REF_SPLICE YES_LDAS 0.1583 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31367 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96574028,chr5:96573984,chr5:96574403,chr5:96574385,chr5:96574013 chr5:96574375,chr5:96574359,chr5:96574404,chr5:96574386,chr5:96574357 NA NA chr5:95909732,chr5:95909688,chr5:95910107,chr5:95910089,chr5:95909717 chr5:95910079,chr5:95910063,chr5:95910108,chr5:95910090,chr5:95910061 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 9 4 9 3.83 ONLY_REF_SPLICE YES_LDAS 0.1451 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31368 DIAPH1::ENSG00000286736 ENSG00000131504.18::ENSG00000286736.1 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DIAPH1 ENSG00000131504.18 protein_coding - - chr5:141515016-141619055:- chr5:141571428:- chr5:140894583-140998622:- chr5:140950995:- ENSG00000286736 ENSG00000286736.1 lncRNA - - chr5:141718711-141775187:- chr5:141719303:- chr5:141098278-141154754:- chr5:141098870:- chr5:141561294,chr5:141561299 chr5:141771188,chr5:141771190 NA NA chr5:140940861,chr5:140940866 chr5:141150755,chr5:141150757 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 42 9 42 ONLY_REF_SPLICE NO_LDAS 0.5768 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31370 SSH2::STK11 ENSG00000141298.19::ENSG00000118046.17 IGR39 SRR8615843 SRR8652110 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1515 TRUE 2684 TRUE 1040 SSH2 ENSG00000141298.19 protein_coding - - chr17:29625938-29930276:- chr17:29848849:- chr17:27952956-28257294:- chr17:28175867:- STK11 ENSG00000118046.17 protein_coding + + chr19:1177558-1228431:+ chr19:1216268:+ chr19:1177557-1228430:+ chr19:1216267:+ chr17:29812988,chr17:29812990 chr19:1210999,chr19:1210997 NA NA chr17:28140006,chr17:28140008 chr19:1210998,chr19:1210996 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["STK11:ArcherDX_panel","STK11:OncomapV4_panel","STK11:Oncogene","STK11:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr19] 4 24 4 4.96 ONLY_REF_SPLICE YES_LDAS 0.1013 GT 1.7465 AG 1.7465 ENST00000540801.6 1-144 ENST00000593219.5 291-306 chr17|-|[2]29848849-29848929[0]|[2]29929938-29930000[0]<==>chr19|+|[2]1216268-1216283[2] atggctttggtcacggtccagcggtcacctacccccagcaccacctccagcccctgcgcctcgagctctcatttggaagacagtgaatcagcagcattactttgctgtgaatgtgaagaatcagaaatctttactgattccaatCTCCTGGCCACTCTGA MALVTVQRSPTPSTTSSPCASSSHLEDSESAALLCCECEESEIFTDSNLLATL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase STK11 CAMK CAMKL LKB Q15831 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE serine/threonine kinase 11 gene (LKB1) 1 Yes NSCLC, pancreatic jejunal hamartoma, ovarian, testicular, pancreatic Peutz-Jeghers syndrome epithelial, mesenchymal, other TSG large_deletion, missense, nonsense, frameshift, splice_site 31371 RAB3B::TXNDC12 ENSG00000169213.7::ENSG00000117862.13 IGROV1 SRR8615844 SRR8652061 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1516 FALSE NA FALSE NA RAB3B ENSG00000169213.7 protein_coding - - chr1:51907956-51990700:- chr1:51990552:- chr1:52373628-52456372:- chr1:52456224:- TXNDC12 ENSG00000117862.13 protein_coding - - chr1:52020131-52055191:- chr1:52028630:- chr1:52485803-52520863:- chr1:52494302:- chr1:51987958 chr1:52040285 NA NA chr1:52453630 chr1:52505957 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:-:[29367] 64 23 64 23 ONLY_REF_SPLICE YES_LDAS 1.0195 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31388 CELF1::MTCH2 ENSG00000149187.19::ENSG00000109919.10 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1519 FALSE NA FALSE NA CELF1 ENSG00000149187.19 protein_coding - - chr11:47465933-47565569:- chr11:47552992:- chr11:47487485-47587121:- chr11:47574544:- MTCH2 ENSG00000109919.10 protein_coding - - chr11:47617315-47642607:- chr11:47639051:- chr11:47638867-47664159:- chr11:47660603:- chr11:47529805,chr11:47529807 chr11:47639954,chr11:47639953 NA NA chr11:47551357,chr11:47551359 chr11:47661506,chr11:47661505 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.05Mb];LOCAL_REARRANGEMENT:-:[51746] 122 90 122 90 ONLY_REF_SPLICE YES_LDAS 2.596 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma,Breast invasive carcinoma LUNG,BREAST exact 47494640|47508302,47586826 FALSE|FALSE,FALSE 47660603|47652639,47644328 TRUE|FALSE,FALSE PARTIALLY,PARTIALLY Out-of-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31389 AEBP2::DCLK1 ENSG00000139154.16::ENSG00000133083.15 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 1520 FALSE NA FALSE NA AEBP2 ENSG00000139154.16 protein_coding + + chr12:19404045-19720801:+ chr12:19440370:+ chr12:19556979-19873735:+ chr12:19593304:+ DCLK1 ENSG00000133083.15 protein_coding - - chr13:35768652-36131382:- chr13:35839176:- chr13:36342789-36705519:- chr13:36413313:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C2H2_4|261-286|0.0018^zf-C2H2|262-286|9.1e-05^Zap1_zf1|263-287|0.00011^zf-C2H2_8|263-330|0.0073^FOXP-CC|263-291|0.00075^zf-C2H2_11|264-286|0.0064^zf-H2C2_2|267-273|7^zf-H2C2_2|278-289|1.8^FOXP-CC|296-305|0.37^Zap1_zf1|297-320|0.42^zf-C2H2|309-322|0.0009^zf-C2H2_4|309-322|0.0059^zf-C2H2_11|310-319|0.071^zf-H2C2_2|315-331|5.9e-08^zf-C2H2|328-351|0.00059^zf-C2H2_4|328-352|0.00027^zf-C2H2_8|330-358|0.0029^FOXP-CC|330-360|0.23^Zap1_zf1|335-349|0.099^zf-C2H2_11|335-349|0.00044^zf-H2C2_2|345-352|4.6 Pkinase-PARTIAL|~115-340|7.6e-80^PK_Tyr_Ser-Thr-PARTIAL|~115-330|2.1e-37^Kdo|145-227|1.3e-08^YrbL-PhoP_reg|175-226|0.00012^Pkinase_fungal|182-248|6.9e-07^Kinase-like|190-282|1.4e-05 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr13] 43 4 43 4 ONLY_REF_SPLICE YES_LDAS 0.5755 GT 1.7465 AG 1.9656 ENST00000266508.14 1-671 ENST00000379893.5 115-1302 chr12|+|[0]19439700-19440370[1]<==>chr13|-|[2]35774535-35774699[0]|[2]35793366-35793479[0]|[2]35805699-35805779[0]|[2]35808224-35808320[2]|[1]35809018-35809095[2]|[1]35810835-35810968[0]|[2]35822729-35822875[0]|[2]35827635-35827754[0]|[2]35828250-35828307[2]|[1]35836033-35836141[1]|[0]35839092-35839176[0] atggccgccgctatcaccgacatggccgacctggaggagctctcccgcctgagccctctgccccccggcagcccgggttcggcggcgcggggccgggctgagccccccgaggaggaggaggaagaggaggaggaggaagaggaggcggaggccgaggcggtggcggcgctgctgctgaacggcggcagcggtgggggcggcggaggcggcggcggaggagtggggggcggcgaggcagagacgatgtcggagccgagccccgagagcgccagccaggccggggaggacgaagacgaggaggaggacgacgaggaggaggaagatgagagcagcagcagcggcgggggtgaggaggagagtagcgccgagagcctggtgggcagcagcggcgggagcagcagcgacgagacccgctcgttgagccccggcgccgccagcagcagcagcggggatggggacggcaaggagggcctggaggagcccaagggaccgcggggcagccagggcggcggcgggggcggcagcagtagcagcagcgtagtctccagcggcggcgacgagggctacgggactgggggaggcggaagcagcgcgacctccgggggccggcggggcagcttggagatgtcgtcggatggggaacccctgagccgcatggactcggaggacagAGCTCTCAGCATGGCGGCTCCTCTACGTCACTTGCGTCCACCAAAGTCTGCAGCTCGATGGATGAGAACGATGGCCCTGGAGAAGAAGTGTCGGAGGAAGGCTTCCAGATTCCAGCTACAATAACAGAACGATATAAAGTCGGAAGAACAATAGGAGATGGAAATTTTGCTGTTGTCAAGGAATGTGTAGAAAGATCGACTGCTAGAGAGTATGCTCTGAAAATTATCAAGAAAAGCAAATGTCGAGGCAAAGAGCACATGATCCAGAATGAAGTGTCTATTTTAAGAAGAGTGAAGCATCCCAATATCGTTCTTCTGATTGAGGAGATGGATGTGCCAACTGAACTGTATCTTGTCATGGAATTAGTAAAGGGGGGAGACCTTTTTGATGCCATTACTTCCACTAACAAATACACCGAGAGAGACGCCAGTGGGATGCTGTACAACCTAGCCAGCGCCATCAAATACCTGCATAGCCTGAACATCGTCCACCGTGATATCAAGCCAGAGAACCTGCTGGTGTATGAGCACCAAGATGGCAGCAAATCACTGAAGCTGGGTGACTTTGGACTGGCCACCATTGTAGACGGCCCCCTGTACACAGTCTGTGGCACCCCAACATACGTGGCTCCAGAAATCATTGCAGAGACTGGATACGGCCTCAAGGTGGACATCTGGGCAGCAGGTGTAATCACTTATATCCTGCTGTGTGGTTTCCCTCCATTCCGTGGAAGTGGTGATGACCAGGAGGTGCTTTTTGATCAGATTTTGATGGGGCAGGTGGACTTTCCTTCTCCATACTGGGATAATGTTTCCGATTCTGCAAAGGAGCTCATTACCATGATGCTGTTGGTCGATGTAGATCAGCGATTTTCTGCTGTTCAAGTACTTGAGCATCCCTGGGTTAATGATGATGGCCTCCCAGAAAATGAACATCAGCTGTCAGTAGCTGGAAAGATAAAGAAGCATTTCAACACAGGCCCCAAGCCGAATAGCACAGCAGCTGGAGTTTCTGTCATAGCAACCACCGCTCTTGATAAGGAGAGGCAGGTTTTCCGACGAAGACGCAACCAGGATGTGAGGAGCCGGTACAAGGCGCAGCCAGCTCCTCCCGAACTCAACTCGGAATCGGAAGACTACTCCCCAAGCTCCTCCGAGACTGTTCGCTCCCCTAACTCGCCCTTTTAA MAAAITDMADLEELSRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSEDRALSMAAPLRHLRPPKSAARWMRTMALEKKCRRKASRFQLQ*QNDIKSEEQ*EMEILLLSRNV*KDRLLESML*KLSRKANVEAKST*SRMKCLF*EE*SIPISFF*LRRWMCQLNCILSWN**RGETFLMPLLPLTNTPRETPVGCCTT*PAPSNTCIA*TSSTVISSQRTCWCMSTKMAANH*SWVTLDWPPL*TAPCTQSVAPQHTWLQKSLQRLDTASRWTSGQQV*SLISCCVVSLHSVEVVMTRRCFLIRF*WGRWTFLLHTGIMFPILQRSSLP*CCWSM*ISDFLLFKYLSIPGLMMMASQKMNISCQ*LER*RSISTQAPSRIAQQLEFLS*QPPLLIRRGRFSDEDATRM*GAGTRRSQLLPNSTRNRKTTPQAPPRLFAPLTRPF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase DCLK1 CAMK DCAMKL O15075 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31392 RIOK3::AQP4-AS1 ENSG00000101782.15::ENSG00000260372.7 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RIOK3 ENSG00000101782.15 protein_coding + + chr18:23453287-23486603:+ chr18:23473483:+ chr18:21033251-21066567:+ chr18:21053447:+ AQP4-AS1 ENSG00000260372.7 lncRNA + + chr18:26655737-27190698:+ chr18:26764216:+ chr18:24235701-24770662:+ chr18:24344180:+ chr18:23474543 chr18:26758239 NA NA chr18:21054507 chr18:24338203 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:3.17Mb] 15 3 15 3 ONLY_REF_SPLICE YES_LDAS 0.2204 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase RIO3 Atypical RIO RIO3 O14730 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31394 PPP2R5B::ENSG00000256615 ENSG00000068971.14::ENSG00000256615.1 SW900 SRR8615853 SRR8670669 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PPP2R5B ENSG00000068971.14 protein_coding + + chr11:64917553-64934475:+ chr11:64928425:+ chr11:64685025-64701947:+ chr11:64695897:+ ENSG00000256615 ENSG00000256615.1 lncRNA + + chr12:21662313-21760032:+ chr12:21759914:+ chr12:21815247-21912966:+ chr12:21912848:+ chr11:64929360,chr11:64929360 chr12:21729561,chr12:21729558 NA NA chr11:64696832,chr11:64696832 chr12:21882495,chr12:21882492 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 1 11 1 ONLY_REF_SPLICE YES_LDAS 0.1469 GT 1.6402 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31398 USP12::LINC02340 ENSG00000152484.14::ENSG00000275294.4 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA USP12 ENSG00000152484.14 protein_coding - - chr13:27066156-27171811:- chr13:27171592:- chr13:27640293-27745948:- chr13:27745729:- LINC02340 ENSG00000275294.4 lncRNA - - chr13:27178263-27251288:- chr13:27190681:- chr13:27752400-27825425:- chr13:27764818:- chr13:27165511,chr13:27165515 chr13:27199789,chr13:27199790 NA NA chr13:27739648,chr13:27739652 chr13:27773926,chr13:27773927 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCGA_StarF2019","CCLE_StarF2019"] 277 61 277 61 ONLY_REF_SPLICE YES_LDAS 4.6452 GT 1.9086 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31399 ENSG00000234768::AFDN ENSG00000234768.1::ENSG00000130396.22 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1523 FALSE NA FALSE NA ENSG00000234768 ENSG00000234768.1 lncRNA + + chr6:168194358-168204501:+ chr6:168194688:+ chr6:168595038-168605181:+ chr6:168595368:+ AFDN ENSG00000130396.22 protein_coding + + chr6:167826893-167972023:+ chr6:167943129:+ chr6:168227573-168372703:+ chr6:168343809:+ chr6:168197072,chr6:168197073 chr6:167932867,chr6:167932865 NA NA chr6:168597752,chr6:168597753 chr6:168333547,chr6:168333545 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["AFDN:Oncogene"] 15 0 15 0 ONLY_REF_SPLICE YES_LDAS 0.2062 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 (AF6) 1 AL leukaemia_lymphoma oncogene, fusion translocation 31400 DERA::PTPRO ENSG00000023697.13::ENSG00000151490.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15982436:+ chr12:16064236-16190315:+ chr12:16135370:+ PTPRO ENSG00000151490.15 protein_coding + + chr12:15322257-15602175:+ chr12:15358505:+ chr12:15475191-15755109:+ chr12:15511439:+ chr12:15992503 chr12:15337866 NA NA chr12:16145437 chr12:15490800 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PTPRO:Oncogene"];INTRACHROMOSOMAL[chr12:0.31Mb] 12 13 12 12.16 ONLY_REF_SPLICE YES_LDAS 0.332 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31401 ZBTB5::UNC13B ENSG00000168795.5::ENSG00000198722.15 SW948 SRR8615856 SRR8670668 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 1522 FALSE NA FALSE NA ZBTB5 ENSG00000168795.5 protein_coding - - chr9:37438102-37465450:- chr9:37465215:- chr9:37438099-37465447:- chr9:37465212:- UNC13B ENSG00000198722.15 protein_coding + + chr9:35161992-35405338:+ chr9:35403167:+ chr9:35161989-35405335:+ chr9:35403164:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:2.03Mb] 11 14 11 14 ONLY_REF_SPLICE YES_LDAS 0.3436 GT 1.7819 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31419 GATAD2A::MAU2 ENSG00000167491.18::ENSG00000129933.21 SKUT1 SRR8615861 SRR8670775 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 1524 FALSE NA FALSE NA GATAD2A ENSG00000167491.18 protein_coding + + chr19:19385826-19508932:+ chr19:19465614:+ chr19:19496635-19619741:+ chr19:19576423:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19354355:+ chr19:19431638-19469563:+ chr19:19465164:+ chr19:19486895,chr19:19486894 chr19:19352588,chr19:19352581 NA NA chr19:19597704,chr19:19597703 chr19:19463397,chr19:19463390 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4307|37-103|8.6e-06 none ["DEEPEST2019","DepMap2023"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_REARRANGEMENT:+:[27071] 156 43 156 43 ONLY_REF_SPLICE YES_LDAS 1.8062 GT 1.7465 AG 1.7968 ENST00000429242.7 1-269 ENST00000262815.13 1549-1842 chr19|+|[0]19465346-19465614[1]<==>chr19|+|[0]19354355-19354445[0]|[1]19355264-19355391[2]|[0]19355708-19355782[2] atgaccgaagaagcatgccgaacacggagtcagaaacgagcgcttgaacgggacccaacagaggacgatgtggagagcaagaaaataaaaatggagagaggattgttggcttcagatttaaacactgacggagacatgagggtgacacctgagccgggagcaggtccaacccaaggattgctgagggcaacagaggccacggccatggccatgggcagaggcgaagggctggtgggcgatgggcccgtggacatgcgcacctcacacagGAGAGTAACAACATGGTGGTGCCTGCCATGCAGCTCGCCAGCAAGATCCCGGACATGTCGGTACAGCTGTGGTCGTCAGCACTGCTGAGAGACCTGAATAAAGCCTGTGGGAACGCCATGGATGCCCATGAAGCCGCCCAGATGCACCAGAACTTCTCGCAGCAGCTGCTCCAGGACCACATTGAGGCCTGCAGCCTCCCCGAACACAACCTCATCACGTGGACAGACGGTCCACCCCCCGTGCAGTTCCAAGCTCAGAATGGACCCAACACCAGCCTGGCCAGCCTCCTGTGA MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGLLRATEATAMAMGRGEGLVGDGPVDMRTSHRRVTTWWCLPCSSPARSRTCRYSCGRQHC*ET*IKPVGTPWMPMKPPRCTRTSRSSCSRTTLRPAASPNTTSSRGQTVHPPCSSKLRMDPTPAWPASC FALSE TRUE hsa-mir-640 chr19:19435063-19435158:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31424 RAB11B::TMOD3 ENSG00000185236.12::ENSG00000138594.14 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RAB11B ENSG00000185236.12 protein_coding + + chr19:8389981-8404434:+ chr19:8390456:+ chr19:8454865-8469318:+ chr19:8455340:+ TMOD3 ENSG00000138594.14 protein_coding + + chr15:51829628-51947295:+ chr15:51934250:+ chr15:52121825-52239492:+ chr15:52226447:+ chr19:8393772,chr19:8393772 chr15:51933769,chr15:51933766 NA NA chr19:8458656,chr19:8458656 chr15:52225966,chr15:52225963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr15] 83 1 83 1 ONLY_REF_SPLICE YES_LDAS 1.0698 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31425 ZC3H15::SLC39A10 ENSG00000065548.18::ENSG00000196950.14 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZC3H15 ENSG00000065548.18 protein_coding + + chr2:186486253-186509361:+ chr2:186495334:+ chr2:187350980-187374088:+ chr2:187360061:+ SLC39A10 ENSG00000196950.14 protein_coding + + chr2:195575977-195737702:+ chr2:195606136:+ chr2:196440701-196602426:+ chr2:196470860:+ chr2:186495709,chr2:186495707 chr2:195591298,chr2:195591289 NA NA chr2:187360436,chr2:187360434 chr2:196456022,chr2:196456013 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:9.07Mb] 82 59 82 59 ONLY_REF_SPLICE YES_LDAS 1.7959 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31427 ZNF77::PCAT19 ENSG00000175691.9::ENSG00000267107.9 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA TRUE 2732 TRUE 1051 ZNF77 ENSG00000175691.9 protein_coding - - chr19:2933218-2944971:- chr19:2944838:- chr19:2933216-2944969:- chr19:2944836:- PCAT19 ENSG00000267107.9 lncRNA - - chr19:41449520-41501255:- chr19:41456487:- chr19:41955425-42007165:- chr19:41962392:- chr19:2941863,chr19:2942099 chr19:41463577,chr19:41463878 NA NA chr19:2941861,chr19:2942097 chr19:41969483,chr19:41969784 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:38.51Mb] 38 6 38 4.47 ONLY_REF_SPLICE YES_LDAS 0.5409 GT 1.6729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31428 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1528 FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111732287:- chr7:111366166-111846462:- chr7:111372343:- chr7:111543034,chr7:111543039 chr7:111734400,chr7:111734400 NA NA chr7:111183090,chr7:111183095 chr7:111374456,chr7:111374456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","ChimerPub","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.16Mb] 35 10 35 10 ONLY_REF_SPLICE YES_LDAS 0.5732 GT 1.2729 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,FALSE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31432 RPAP2::MTF2 ENSG00000122484.9::ENSG00000143033.18 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1529 FALSE NA FALSE NA RPAP2 ENSG00000122484.9 protein_coding + + chr1:92299059-92402056:+ chr1:92336427:+ chr1:92764616-92867613:+ chr1:92801984:+ MTF2 ENSG00000143033.18 protein_coding + + chr1:93079235-93139079:+ chr1:93110230:+ chr1:93544792-93604636:+ chr1:93575787:+ chr1:92342223,chr1:92342218 chr1:93087255,chr1:93087246 NA NA chr1:92807780,chr1:92807775 chr1:93552812,chr1:93552803 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RPAP2_Rtr1|15-35|0.66^RPAP2_Rtr1|80-151|3.5e-30^RPAP2_Rtr1|251-273|0.7^NAD_Gly3P_dh_N|282-392|2.5e-05 SGF29_Tudor|35-85|0.00013^Tudor_2|49-84|1.9e-16^DUF4537|49-93|3.9e-06^C1_1|101-136|1.5e-05^Prok-RING_1|104-134|2.4e-07^PHD|105-154|2.5e-14^ASH2L-like_WH|121-139|9.6^SGF29_Tudor|174-194|5.3^ASH2L-like_WH|197-260|5.4e-10^PHD|204-252|1.3e-05^C1_1|205-232|3.1^Prok-RING_1|217-232|10^C1_1|242-253|3.1^Prok-RING_1|248-253|7.5^ASH2L-like_WH|511-546|7.6^DUF3573|515-589|0.00021^Mtf2_C|544-591|4.1e-31^Chromo|569-589|0.00015 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.68Mb] 21 8 21 8 ONLY_REF_SPLICE YES_LDAS 0.3694 GT 1.9219 AG 1.9329 ENST00000610020.2 1-1619 ENST00000370298.9 6-1782 chr1|+|[0]92299074-92299146[0]|[1]92300194-92300239[1]|[2]92301476-92301590[2]|[0]92303977-92304075[2]|[0]92304284-92304349[2]|[0]92307188-92307276[1]|[2]92320599-92320634[1]|[2]92323445-92324375[2]|[0]92333391-92333473[1]|[2]92336347-92336427[1]<==>chr1|+|[2]93110230-93110428[2]|[0]93110545-93110626[0]|[1]93114688-93114783[0]|[1]93114988-93115088[2]|[0]93115470-93115618[1]|[2]93118345-93118440[1]|[2]93119333-93119401[1]|[2]93120549-93120672[2]|[0]93127232-93127299[1]|[2]93129278-93129448[1]|[2]93133703-93133808[2]|[0]93133928-93133980[1]|[2]93134091-93134195[1]|[2]93136670-93137027[2] atggcggacttcgctgggccgtcttctgccggccgcaaggccggggctccccgctgctctcgaaaagccgcaggtactaaacagacaagtactttgaaacaagaagatgcttctaaaaggaaagctgaactagaagcagctgtgagaaagaagattgaatttgagagaaaagctctacatattgttgaacagcttttagaggagaatattacagaagagttcctaatggagtgtgggaggttcattacacctgctcactacagtgatgtcgtggatgaacgttctattgtcaaactctgtggttatcctttatgtcagaagaagctgggaattgtaccaaaacagaaatataaaatttctaccaaaaccaataaagtctatgatattactgaaagaaagtctttttgcagcaatttttgttatcaagcatctaagttttttgaagcacaaattcccaaaactccagtatgggttcgagaagaagagaggcatcctgattttcaactgctaaaggaagaacaaagtggccattctggagaagaagtacagttatgcagtaaagccattaaaacatcagatatcgacaatcctagccactttgaaaagcaatatgaatctagttcttctagcactcacagtgatagtagcagtgacaatgagcaagactttgtttcctccattctaccaggaaacagaccaaattcaacaaatattagaccacagctgcaccaaaaaagcataatgaaaaagaaagctggtcacaaagctaactccaaacacaaagacaaagaacagacagtagtagatgtcactgagcagttaggcgattgcaaattagatagtcaggagaaagatgctacatgtgaacttcctttacagaaagtaaatactcagagttcttcaaatagcactttgcctgaaagattaaaagcgtcagaaaattctgaaagtgaatacagtaggtcagaaataactctagtaggcataagtaagaaaagtgcagagcattttaagagaaaatttgccaaatcaaaccaagtgtctaggtcagtgtctagttcagtgcaggtgtgtcctgaagttggaaagagaaacttacttaaagttttgaaggagactttgattgagtggaagacagaagaaacattgaggtttttgtatggccagaattatgcttctgtgtgtctgaaacccgaagcctctctggttaaagaagaacttgatgaagatgacataatctcagatccagatagtcatttccctgcctggagggaatctcagaacagcttggatgagtctttaccttttaggggctcaggtacagccattaaaccactgccaagttacgagaatttgaaaaaagaaactgaaaagttaaatctgaggatcagggagttttacagaggacggtatgttttgggtgaagaaaccaccaaatcacaagactcagaagagcatgattccacctttccactgatagactcaagttcccagaaccagattagaaaacgcatcgtacttgaaaagttgagtaaagtgttgcctgggcttctggttcctcttcagattacattgggagatatttacacacaacttaaaaatcttgttcgaactttcagAGACTCTACAGGGGCAGGTAATTCACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGGATGGACATAAAGCCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTTGGCACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTCTAAATCCTGGGTTCTCTGGAAGGACATTCAAACAGGAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTGGCCAAGGATATCATCAGTTGTGTCACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAACAACAACAAAGAGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGAGGCCCTGGAGACTGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTGCAATGCCTTCAAAAGCCAATGCTATTTGGAGACAGATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAACGTCTACCATTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAGCTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCATGTTTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTCAAAGCAGAGAAAGAACCTGAAGGAACATCTCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTATATCTGATTCAAGGGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTGGATAAGGAATCAATTTCAGAGAATCCTACTTTGGATTTACCTTGTTCTATAGGGAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTTCCAGGCATTATGGATTATCTGACTCCAGAAAAAGAACGCGTACAGGAAGATCTTGGCCTGCTGCAATACCACATTTGCGGAGAAGAAGAGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAGATGATGAAGGCAAAGAAGATTATCAGTTTGATGAACTCAACACAGAGATTCTGAATAACTTAGCAGATCAGGAGTTACAACTCAATCATCTAAAGAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGCGAAAAATACCGAGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTGCATCCTGA MADFAGPSSAGRKAGAPRCSRKAAGTKQTSTLKQEDASKRKAELEAAVRKKIEFERKALHIVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEERHPDFQLLKEEQSGHSGEEVQLCSKAIKTSDIDNPSHFEKQYESSSSSTHSDSSSDNEQDFVSSILPGNRPNSTNIRPQLHQKSIMKKKAGHKANSKHKDKEQTVVDVTEQLGDCKLDSQEKDATCELPLQKVNTQSSSNSTLPERLKASENSESEYSRSEITLVGISKKSAEHFKRKFAKSNQVSRSVSSSVQVCPEVGKRNLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPEASLVKEELDEDDIISDPDSHFPAWRESQNSLDESLPFRGSGTAIKPLPSYENLKKETEKLNLRIREFYRGRYVLGEETTKSQDSEEHDSTFPLIDSSSQNQIRKRIVLEKLSKVLPGLLVPLQITLGDIYTQLKNLVRTFRDSTGAGNSLVHKRSPLRRNQKTPTSLTKLSLQDGHKAKKPACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQKPMLFGDRFYTFICSVCSSGPEYLKRLPLQWVDIAHLCLYNLSVIHKKKYFDSELELMTYINENWDRLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKKHLFGLRIRVPPVPPNVAFKAEKEPEGTSHEFKIKGRKASKPISDSREVSNGIEKKGKKKSVGRPPGPYTRKMIQKTAEPLLDKESISENPTLDLPCSIGRTEGTAHSSNTSDVDFTGASSAKETTSSSISRHYGLSDSRKRTRTGRSWPAAIPHLRRRRGRLPRRALQTQNSEIVKDDEGKEDYQFDELNTEILNNLADQELQLNHLKNSITSYFGAAGRIACGEKYRVLARRVTLDGKVQYLVEWEGATAS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31433 PEX11G::NRL ENSG00000104883.8::ENSG00000129535.13 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PEX11G ENSG00000104883.8 protein_coding - - chr19:7476875-7497449:- chr19:7488951:- chr19:7541761-7562335:- chr19:7553837:- NRL ENSG00000129535.13 protein_coding - - chr14:24078662-24115010:- chr14:24084745:- chr14:24547871-24584219:- chr14:24553954:- chr19:7487393,chr19:7487396 chr14:24084981,chr14:24084981 NA NA chr19:7552279,chr19:7552282 chr14:24554190,chr14:24554190 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr14] 18 0 18 0 ONLY_REF_SPLICE YES_LDAS 0.2293 GT 1.5628 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31435 ZNF77::PCAT19 ENSG00000175691.9::ENSG00000267107.9 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA TRUE 2732 TRUE 1051 ZNF77 ENSG00000175691.9 protein_coding - - chr19:2933218-2944971:- chr19:2944838:- chr19:2933216-2944969:- chr19:2944836:- PCAT19 ENSG00000267107.9 lncRNA - - chr19:41449520-41501255:- chr19:41456923:- chr19:41955425-42007165:- chr19:41962828:- chr19:2941863,chr19:2942099 chr19:41463577,chr19:41463878 NA NA chr19:2941861,chr19:2942097 chr19:41969483,chr19:41969784 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:38.51Mb] 12 7 12 2.53 ONLY_REF_SPLICE YES_LDAS 0.185 GT 1.6729 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31438 CLPX::CCDC171 ENSG00000166855.9::ENSG00000164989.17 ONS76 SRR8615867 SRR8670742 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1530 FALSE NA FALSE NA CLPX ENSG00000166855.9 protein_coding - - chr15:65148219-65185342:- chr15:65185075:- chr15:65440557-65477680:- chr15:65477413:- CCDC171 ENSG00000164989.17 protein_coding + + chr9:15553043-16061663:+ chr9:15777600:+ chr9:15553041-16061661:+ chr9:15777598:+ chr15:65182616,chr15:65182619 chr9:15755570,chr9:15755567 NA NA chr15:65474954,chr15:65474957 chr9:15755568,chr9:15755565 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame A2L_zn_ribbon|4-8|1.2 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr9] 8 4 8 3.92 ONLY_REF_SPLICE YES_LDAS 0.1518 GT 1.7819 AG 1.7465 ENST00000559152.5 1-79 ENST00000380701.8 2672-3981 chr15|-|[0]65185075-65185153[0]<==>chr9|+|[1]15777600-15777826[2]|[0]15778968-15779150[2]|[0]15784509-15784694[2]|[0]15846702-15846847[1]|[2]15848893-15848947[2]|[0]15874532-15874663[2]|[0]15920270-15920422[2]|[0]15971609-15971836[2] atgcccagctgcggtgcttgtacttgcggcgcggcggccgtccggctcatcacctcctcactcgcctccgcgcagagagATCCAAATTCCAGAATTTGTGGACATTTACTCATAGGTGCAGCCAAGAATTCTTTTGCAAAACTCATGGATAAAATTAGTCTGGTAATGGAATGTATACCTCTGCACAGTAGCAGGAGTATTACATATGTAGAAAAAGATTCCCTGGTTCAGAGGCTGGCCCATGGACTTCATAAAGTAAACACACTGGCCCTGAAATATGGTTTGCGTGGCCATGTGCCCATTACGAAAAGCACAGCATCGTTGCAGAAGCAAATACTTGGATTTACACAAAGACTGCATGCTGCAGAAGTGGAGCGCCGCTCACTACGCTTAGAGGTCACAGAATTCAAACGAAGTGTGAATGAAATGAAAAAGGAGCTTGACAAAGCCCAGGGTCTGCAAATGCAATTAAATGAATTTAAGCAGTCTAAATTGATCACCCATGAGAAGTTTGAAAGTGCATGTGAAGAACTAAATAATGCATTACTTCGGGAAGAGCAGGCACAAATGCTATTGAATGAACAGGCACAACAACTACAGGAATTGAATTATAAACTTGAATTGCACTCCAGTGAGGAAGCTGACAAAAACCAAACTCTTGGAGAAGCTGTTAAGAGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTCAGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCCATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAAAGACAAAGAATGTGTTGCTAATCACATGAGAGCAGTAGAAAATACGCTTCACAAGGTCAGAGATCAGATCTCGCTGTCATGGTCTGCGGCAAGTAGGAATGACTTCACCCTACAGCTACCCAAACTGCACCTGGAGACCTTTGCAATGGAGGGGCTCAAGGGCGGGCCAGAGGTGGTAGCATGCCAGGCTATGATTAAAAGTTTCATGGATGTCTACCAGCTTGCAAGCACTAGAATCATGACATTAGAGAAGGAAATGACATCTCATCGAAGTCACATTGCAGCCTTGAAATCAGAACTTCACACAGCTTGTTTACGTGAAAATGCAAGTTTACAATCAATAGGATCACGAGACCATTCAAATCTCTCCATTCCTTCAAGAGCTCCTCTTCCTGCTGACACAACTGGTATTGGGGATTTCTTACCATTGAAAGCTGAACTTGATACTACTTACACTTTCTTAAAGGAGACATTTATAAATACTGTGCCCCATGCTCTGACATCATCTCACTCCTCTCCAGTGACTATGTCTGCTAATGCCAACAGACCAACTCAGATTGGATTATGA MPSCGACTCGAAAVRLITSSLASAQRDPNSRICGHLLIGAAKNSFAKLMDKISLVMECIPLHSSRSITYVEKDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTASLQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQGLQMQLNEFKQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWSAASRNDFTLQLPKLHLETFAMEGLKGGPEVVACQAMIKSFMDVYQLASTRIMTLEKEMTSHRSHIAALKSELHTACLRENASLQSIGSRDHSNLSIPSRAPLPADTTGIGDFLPLKAELDTTYTFLKETFINTVPHALTSSHSSPVTMSANANRPTQIGL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31443 ANXA9::NUP210L ENSG00000143412.10::ENSG00000143552.10 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1534 FALSE NA FALSE NA ANXA9 ENSG00000143412.10 protein_coding + + chr1:150982249-150995634:+ chr1:150988341:+ chr1:150954725-150968110:+ chr1:150960817:+ NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154012370:- chr1:153965166-154127592:- chr1:153984846:- chr1:150991572,chr1:150991573 chr1:154013007,chr1:154013006 NA NA chr1:150964048,chr1:150964049 chr1:153985483,chr1:153985482 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Myb_DNA-bind_7|45-75|0.012^Annexin|46-110|6.8e-21^CUE|59-70|0.35^Phage_Mu_Gp27|70-133|4.2e-05^Myb_DNA-bind_7|77-129|0.0016^HTH_34|107-142|2.8e-05^CUE|116-140|9.9e-05^Annexin|117-182|1.3e-20^Annexin|201-264|2.4e-15^Myb_DNA-bind_7|221-257|0.025^Annexin|274-339|2.9e-21 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:3.00Mb] 29 20 29 20 ONLY_REF_SPLICE YES_LDAS 0.5934 GT 1.7968 AG 1.8892 ENST00000368947.9 1-852 ENST00000368559.8 4654-5667 chr1|+|[0]150983106-150983180[2]|[0]150983338-150983434[0]|[1]150983975-150984069[2]|[0]150984281-150984394[2]|[0]150984586-150984676[0]|[1]150986336-150986415[2]|[0]150986602-150986661[2]|[0]150987872-150987956[0]|[1]150988091-150988186[0]|[1]150988283-150988341[2]<==>chr1|-|[2]153992835-153992935[1]|[0]153993015-153993089[1]|[0]153995076-153995180[1]|[0]154000856-154001060[0]|[2]154001735-154001985[1]|[0]154009972-154010121[1]|[0]154012244-154012370[0] atgtctgtgactggcgggaagatggcaccgtccctcacccaggagatcctcagccacctgggcctggccagcaagactgcagcgtgggggaccctgggcaccctcaggaccttcttgaacttcagcgtggacaaggatgcgcagaggctactgagggccattactggccaaggcgtggaccgcagtgccattgtggacgtgctgaccaaccggagcagagagcaaaggcagctcatctcacgaaacttccaggagcgcacccaacaggacctgatgaagtctctacaggcagcactttccggcaacctggagaggattgtgatggctctgctgcagcccacagcccagtttgacgcccaggaattgaggacagctctgaaggcctcagattctgctgtggacgtggccattgaaattcttgccactcgaaccccaccccagctgcaggagtgcctggcagtctacaaacacaatttccaggtggaggctgtggatgacatcacatctgagaccagtggcatcttgcaggacctgctgttggccctggccaaggggggccgtgacagctactctggaatcattgactataatctggcagaacaagatgtccaggcactgcagcgggcagaaggacctagcagagaggaaacatgggtcccagtcttcacccagcgaaatcctgaacacctcatccgagtgtttgatcagtaccagcggagcactgggcaagagctggaggaggctgtccagaaccgtttccatggagatgctcaggtggctctgctcggcctagcttcggtgatcaagaacacaccgctgtactttgctgacaaacttcatcaagccctccagGTGGTGGTCAATGCATCATCAAGATTAATGCTCAGTTATGACCTCAAGACTTATCTCACCAATACCCTCAATTCAACTGTATTCAAGCTCTTCATCACCACTGGCAGAAATGGTGTCAATCTTAAAGGATTCTGTACCCCAAACCAGGCCTTGGCCATTACAAAAGTACTTCTTCCAGCGACCCTCATGCTGTGCCATGTACAGTTCAGTAATACTTTGCTAGACATTCCAGCAAGTAAAGTCTTTCAGGTCCATTCAGATTTCAGTATGGAGAAAGGGGTTTATGTCTGCATAATCAAGGTTCGACCGCAGTCAGAGGAGCTGCTACAGGCCCTCAGTGTGGCTGACACCTCAGTCTATGGGTGGGCTACACTGGTCAGTGAACGTAGCAAGAATGGAATGCAACGAATCCTCATTCCTTTCATCCCAGCCTTTTATATTAACCAGTCAGAATTGGTTCTTAGCCACAAACAAGATATCGGGGAGATAAGAGTACTGGGAGTGGACAGAGTTCTTAGGAAGCTAGAGGTCATCTCCAGCTCCCCAGTTCTAGTGGTCGCTGGCCATAGCCACTCTCCCCTCACTCCTGGCCTGGCCATTTACTCTGTAAGAGTGGTCAACTTCACTTCCTTCCAGCAAATGGCATCACCTGTTTTCATCAATATTTCCTGTGTACTCACCAGTCAAAGTGAGGCAGTGGTAGTGAGGGCTATGAAAGATAAGTTGGGTGCAGATCACTGTGAAGATTCCGCCATCCTCAAGCGGTTCACTGGCTCTTACCAGATCCTGCTCTTGACCCTCTTTGCAGTGCTGGCATCAACAGCTTCCATCTTCCTAGCATACAATGCCTTCCTAAACAAGATACAAACAGTTCCAGTTGTGTATGTACCAACTCTAGGAACACCACAGCCAGGTTTTTTTAACTCCACAAGTTCTCCCCCTCACTTCATGAGTCTACAACCTCCATTGGCCCAAAGTCGGCTGCAACATTGGTTATGGAGTATAAGGCACTAA MSVTGGKMAPSLTQEILSHLGLASKTAAWGTLGTLRTFLNFSVDKDAQRLLRAITGQGVDRSAIVDVLTNRSREQRQLISRNFQERTQQDLMKSLQAALSGNLERIVMALLQPTAQFDAQELRTALKASDSAVDVAIEILATRTPPQLQECLAVYKHNFQVEAVDDITSETSGILQDLLLALAKGGRDSYSGIIDYNLAEQDVQALQRAEGPSREETWVPVFTQRNPEHLIRVFDQYQRSTGQELEEAVQNRFHGDAQVALLGLASVIKNTPLYFADKLHQALQVVVNASSRLMLSYDLKTYLTNTLNSTVFKLFITTGRNGVNLKGFCTPNQALAITKVLLPATLMLCHVQFSNTLLDIPASKVFQVHSDFSMEKGVYVCIIKVRPQSEELLQALSVADTSVYGWATLVSERSKNGMQRILIPFIPAFYINQSELVLSHKQDIGEIRVLGVDRVLRKLEVISSSPVLVVAGHSHSPLTPGLAIYSVRVVNFTSFQQMASPVFINISCVLTSQSEAVVVRAMKDKLGADHCEDSAILKRFTGSYQILLLTLFAVLASTASIFLAYNAFLNKIQTVPVVYVPTLGTPQPGFFNSTSSPPHFMSLQPPLAQSRLQHWLWSIRH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31444 DLG1::PCYT1A ENSG00000075711.21::ENSG00000161217.12 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1533 FALSE NA FALSE NA DLG1 ENSG00000075711.21 protein_coding - - chr3:197042560-197299330:- chr3:197282679:- chr3:196769431-197026201:- chr3:197009550:- PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196248323:- chr3:195941093-196014828:- chr3:195975194:- chr3:197218774,chr3:197218909 chr3:196252778,chr3:196253101 NA NA chr3:196945645,chr3:196945780 chr3:195979649,chr3:195979972 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame L27_1|6-63|3.6e-32^MAGUK_N_PEST|107-161|4e-25^PDZ_4|128-190|0.47^MAGUK_N_PEST|161-172|0.011^PDZ|173-256|8.1e-24^PDZ_2|199-260|4.5e-08^DUF6288|202-248|0.026^PDZ_6|204-258|5.9e-10^PDZ_4|214-239|0.16^PDZ-PARTIAL|269-318~|2.1e-23^PDZ_2-PARTIAL|287-318~|7.6e-06^DUF6288-PARTIAL|296-318~|0.037^PDZ_6-PARTIAL|299-318~|5.8e-09^PDZ_4-PARTIAL|309-318~|0.015 BRCA-2_OB3|227-269|5.1e-05^DUF1664|233-272|1.5e-05^CTP_transf_like|244-257|0.76^YtxH|247-283|6e-06 ["DLG1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.75Mb] 26 25 26 25 ONLY_REF_SPLICE YES_LDAS 0.6175 GT 1.9656 AG 1.9219 ENST00000667104.1 1-318 ENST00000419333.5 218-1143 chr3|-|[2]197282679-197282845[1]|[0]197296346-197296477[1]|[0]197297186-197297204[0]<==>chr3|-|[2]196230014-196230072[1]|[0]196238708-196238894[0]|[2]196239547-196239735[0]|[2]196241948-196242090[1]|[0]196242562-196242640[0]|[2]196247367-196247518[1]|[0]196248207-196248323[1] atgccggtccggaagcaagatacccagagagcattgcaccttttggaggaatatcgttcaaaactaagccaaactgaagacagacagctcagaagttccatagaacgggttattaacatatttcagagcaacctctttcaggctttaatagatattcaagaattttatgaagtgaccttactggataatccaaaatgtatagatcgttcaaagccgtctgaaccaattcaacctgtgaatacttgggagatttccagccttccaagctctactgtgacttcagagacactgccaagcagccttagccctagtgtagagGTGAGCGACCTGTGAGAGTTTATGCCGATGGAATATTTGACTTATTTCACTCTGGTCACGCCCGAGCTCTGATGCAAGCGAAGAACCTTTTCCCTAATACGTACCTCATTGTGGGAGTTTGCAGTGATGAGCTCACACACAACTTCAAAGGCTTCACGGTGATGAACGAGAATGAGCGCTATGACGCAGTCCAGCACTGCCGCTACGTGGATGAGGTGGTGAGGAATGCGCCCTGGACGCTGACACCCGAGTTCCTGGCCGAACACCGGATTGATTTTGTAGCCCATGATGATATTCCTTATTCATCTGCTGGCAGTGATGATGTTTATAAGCACATCAAGGAGGCAGGCATGTTTGCTCCAACACAGAGGACAGAAGGTATCTCCACATCAGACATCATCACCCGAATTGTGCGGGATTATGATGTGTATGCGAGGCGGAACCTGCAGAGGGGCTACACAGCAAAGGAGCTCAATGTCAGCTTTATCAACGAGAAGAAATACCACTTGCAGGAGAGGGTTGACAAAGTAAAGAAGAAAGTGAAAGATGTGGAGGAAAAGTCAAAAGAATTTGTTCAGAAGGTGGAGGAAAAAAGCATTGACCTCATTCAGAAGTGGGAGGAGAAGTCCCGAGAATTCATTGGAAGTTTTCTGGAAATGTTTGGTCCGGAAGGAGCACTGAAACATATGCTGAAAGAGGGGAAGGGCCGGATGCTGCAGGCCATCAGCCCGAAGCAGAGCCCCAGCAGCAGCCCTACTCGCGAGCGCTCCCCCTCCCCCTCTTTCCGATGGCCCTTCTCCGGCAAGACTTCCCCACCTTGCTCCCCAGCAAATCTCTCCAGGCACAAGGCTGCAGCCTATGATATCAGGTATAGTTACCTGGAACAGAGCAAATTTGGCTCCCATGTTCTGCTCACCCAGGTGTAG MPVRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEVTLLDNPKCIDRSKPSEPIQPVNTWEISSLPSSTVTSETLPSSLSPSVEVSDL*EFMPMEYLTYFTLVTPEL*CKRRTFSLIRTSLWEFAVMSSHTTSKASR**TRMSAMTQSSTAATWMRW*GMRPGR*HPSSWPNTGLIL*PMMIFLIHLLAVMMFISTSRRQACLLQHRGQKVSPHQTSSPELCGIMMCMRGGTCRGATQQRSSMSALSTRRNTTCRRGLTK*RRK*KMWRKSQKNLFRRWRKKALTSFRSGRRSPENSLEVFWKCLVRKEH*NIC*KRGRAGCCRPSARSRAPAAALLASAPPPPLSDGPSPARLPHLAPQQISPGTRLQPMISGIVTWNRANLAPMFCSPRC FALSE TRUE hsa-mir-4797 chr3:197293878-197293948:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31456 PPP4R2::GXYLT2 ENSG00000163605.16::ENSG00000172986.13 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1532 FALSE NA FALSE NA PPP4R2 ENSG00000163605.16 protein_coding + + chr3:72996803-73069198:+ chr3:72998158:+ chr3:73045954-73118349:+ chr3:73047309:+ GXYLT2 ENSG00000172986.13 protein_coding + + chr3:72888046-72998138:+ chr3:72974977:+ chr3:72937197-73047289:+ chr3:73024128:+ chr3:73011655,chr3:73011656 chr3:72971097,chr3:72971090 NA NA chr3:73060806,chr3:73060807 chr3:73020248,chr3:73020241 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PPP4R2-PARTIAL|42-221~|4e-89^DUF1411|45-90|0.0015 none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS_OVERLAP:+:+:[1353] 8 10 8 10 ONLY_REF_SPLICE NO_LDAS 0.218 GT 1.7968 AG 1.7819 ENST00000710398.1 1-221 ENST00000389617.9 1150-1332 chr3|+|[0]72996933-72997071[0]|[1]72998077-72998158[1]<==>chr3|+|[0]72974977-72975159[2] gtgtgtgcgagggagggggagggcgtcgggggggtggggggaggcgttccggtccccaagagacccgcggagggaggcggaggctgtgagggactccgggaagccatggacgtcgagaggctccaggaggcgctgaaagattttgagaagagggggaaaaaggaagtttgtcctgtcctggatcagtttctttgtcatgtagccaagactggagaaacaatTTTCCCTTTCAAGACAATCTCTTTCAATCCATGTATTACCCCCTTCAGCTGAAGTTTTTGGAGACTGTGCACACTTTATGTGGACGAATCCCGCAAGTTTTTCTGAAGCAAATTGAGAAAACAATGAAAAGGGCTTATGAGAAACACGTCATCATCCATGTTGGCCCCAACCAGATGCACTGA VCAREGEGVGGVGGGVPVPKRPAEGGGGCEGLREAMDVERLQEALKDFEKRGKKEVCPVLDQFLCHVAKTGETIFPFKTISFNPCITPFS*SFWRLCTLYVDESRKFF*SKLRKQ*KGLMRNTSSSMLAPTRCT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31457 RFX3::GLIS3 ENSG00000080298.16::ENSG00000107249.24 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1536 FALSE NA FALSE NA RFX3 ENSG00000080298.16 protein_coding - - chr9:3218297-3526004:- chr9:3525747:- chr9:3218297-3526004:- chr9:3525747:- GLIS3 ENSG00000107249.24 protein_coding - - chr9:3824127-4348392:- chr9:3932470:- chr9:3824127-4348392:- chr9:3932470:- chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA chr9:3495834,chr9:3495836 chr9:3933671,chr9:3933670 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.30Mb] 7 2 7 1.75 ONLY_REF_SPLICE YES_LDAS 0.106 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31458 WDSUB1::BAZ2B ENSG00000196151.11::ENSG00000123636.19 OVCAR4 SRR8615870 SRR8670727 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1535 FALSE NA FALSE NA WDSUB1 ENSG00000196151.11 protein_coding - - chr2:159235798-159286703:- chr2:159256196:- chr2:160092309-160143214:- chr2:160112707:- BAZ2B ENSG00000123636.19 protein_coding - - chr2:159318979-159616569:- chr2:159337772:- chr2:160175490-160473080:- chr2:160194283:- chr2:159255099,chr2:159255119 chr2:159344866,chr2:159344880 NA NA chr2:160111610,chr2:160111630 chr2:160201377,chr2:160201391 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|3-38|5.3e-09^NBCH_WD40|4-38|0.092^SAM_3|27-38|7.8^NBCH_WD40|30-87|0.00025^eIF2A|34-112|0.019^ANAPC4_WD40|49-94|2.6e-06^WD40|50-82|6.6e-11^PROPPIN|53-89|0.26^Ge1_WD40|56-81|0.016^WD40_like|62-121|0.47^PALB2_WD40|67-124|5.4e-05^RMC1_N|82-127|0.011^WD40|95-125|2.6e-09^ANAPC4_WD40|95-132|0.00056^Ge1_WD40|99-125|0.0016^NBCH_WD40|102-128|0.0095^ANAPC4_WD40|104-190|9.2e-05^PROPPIN|111-161|0.0026^eIF2A|117-160|0.00085^Ge1_WD40|140-264|3e-06^WD40|142-167|1.2e-06^NBCH_WD40|143-168|0.11^WD40|171-217|3.6e-07^PALB2_WD40|230-286|0.28^WD40|231-267|2.6e-12^ANAPC4_WD40|240-289|7.8e-06^PROPPIN|242-355|0.00041^WD40_like|242-320|0.00022^NBCH_WD40|248-329|5.7e-09^eIF2A|253-322|0.0019^NUMOD1|261-273|0.0066^RMC1_N|262-314|0.0093^WD40|273-308|3.7e-12^Ge1_WD40|277-326|0.0015^ANAPC4_WD40|281-317|0.24^NUMOD1|306-314|0.2^SAM_PNT|323-376|3.7e-08^SAM_1|331-377|1.6e-10^SAM_2|332-377|7.9e-08^SAM_3|333-372|1.4e-05^NUMOD1|369-378|6.9^U-box|378-429|2.7e-15^NBCH_WD40|403-427|0.19 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_REARRANGEMENT:-:[32180] 7 5 7 4.92 ONLY_REF_SPLICE YES_LDAS 0.1444 GT 1.5219 AG 1.8323 ENST00000409124.1 1-1132 ENST00000392782.5 5347-6399 chr2|-|[0]159256196-159256375[1]|[0]159257758-159257864[2]|[1]159257945-159257985[0]|[2]159259810-159259843[2]|[1]159271702-159271795[1]|[0]159275546-159275638[1]|[0]159279761-159279945[2]|[1]159282672-159283069[0]<==>chr2|-|[2]159320265-159320418[2]|[1]159324811-159324954[2]|[1]159325653-159325918[0]|[2]159332540-159332686[0]|[2]159336942-159337077[2]|[1]159337567-159337772[0] atggtgaaactgattcacacattagctgatcatggtgacgatgtcaactgctgtgccttctccttttccctcttggctacttgctccttggacaaaacaattcgcctgtactcgttacgtgactttactgaactgccacattctccattgaagtttcatacctatgctgtccactgctgctgtttctccccttcaggacatattttggcatcgtgttcaacagatggtaccactgtcctatggaatactgaaaatggacagatgctggcagtgatggaacagcctagtggcagccctgtgagggtttgccagttttccccagactccacgtgtttggcatcaggggcagctgatggaactgtggttttgtggaatgcacagtcatacaaattatatagatgtggtagtgttaaagatggctccttggcggcatgtgcattttctcctaatggaagcttctttgtcactggctcctcatgtggtgatttaacagtgtgggatgataaaatgaggtgtctgcatagtgaaaaagcacatgatcttggaattacctgctgcgatttttcttcacagccagtttctgatggagaacaaggtcttcagttttttcgactggcatcatgtggtcaggattgccaagtcaaaatttggattgtttcttttacccatatcttaggttttgaattaaaatataaaagtacactgagtgggcactgtgctcctgttctggcttgtgctttttcccatgatgggcagatgctagtctcagggtcagtggataagtctgtcatagtatatgatactaatactgagaatatacttcacacattgactcagcacaccaggtatgtcacaacttgtgcttttgcacctaatacccttttacttgctactggttcaatggacaaaacagtgaacatctggcaatttgacctggaaacactttgccaagcaaggcgcacagaacatcagctgaagcaatttaccgaagattggtcagaggaggatgtctcaacatggctttgtgcacaagatttaaaagatcttgttggtattttcaagatgaataacattgatggaaaagaactgttgaatcttacaaaagaaagtctggctgatgatttgaaaattgGGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGACGAAAGCAGTGCACATGCACTAGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAGAATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTTTACTGCCAAATCTGTCGAAAGGGAGATAATGAAGAACTGCTTCTTCTTTGTGATGGCTGTGACAAAGGCTGTCATACCTACTGCCATAGACCCAAGATTACAACAATCCCAGATGGAGACTGGTTTTGTCCAGCTTGCATTGCTAAGGCAAGTGGTCAAACTCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGACTAATGAGTCAAAGAAAGGCAAGAAGGTAACTTTAACAGGAGATACTGAAGATGAAGACTCTGCATCTACAAGTAGTTCACTAAAAAGAGGAAACAAAGACCTCAAGAAAAGAAAAATGGAGGAAAACACTTCTATTAACTTGTCAAAACAAGAAAGTTTTACTTCAGTTAAGAAACCTAAAAGAGATGACTCCAAGGACCTAGCTCTTTGCAGTATGATTCTGACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAACTAAGTAGTGGACAGTATCCAAACCTTGAAACCTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGATTCTGATATAGGCAGAGCTGGCCACAATATGAGGAAGTATTTTGAAAAAAAGTGGACAGATACTTTCAAAGTGAGCTGA MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHDLGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIGLDVSRACIRKGGLGIF*T*IIY*IVQGA*WRIYWRRRKQCTCTRTEE*QPPRYSCNQAG*FGAEH*KKN*RGYCSRAQGMEKGIIRSSQCCTGSSVHSAITEINSMGKINYESLLPNLSKGR**RTASSL*WL*QRLSYLLP*TQDYNNPRWRLVLSSLHC*GKWSNSKNQKTSCQRKKD**VKERQEGNFNRRY*R*RLCIYK*FTKKRKQRPQEKKNGGKHFY*LVKTRKFYFS*ET*KR*LQGPSSLQYDSD*NGNS*GCMAFSTSCKLETCSWL*ESY*EAYGFFHN*RETK*WTVSKP*NLCSRCQACF*QL*NI**R*F*YRQSWPQYEEVF*KKVDRYFQSEL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Lung squamous cell carcinoma BREAST,LUNG no_match 160136272|160132057|160128213,160104883 FALSE|FALSE|FALSE,FALSE 160189197|160189197|160189197,160269056 FALSE|FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31461 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59648401:+ chr17:57697045-57774317:+ chr17:57725762:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ chr17:59649813,chr17:59649814 chr17:59838989,chr17:59838987 NA NA chr17:57727174,chr17:57727175 chr17:57916350,chr17:57916348 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin-PARTIAL|693-696~|3.8e-32 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 72 21 72 21 ONLY_REF_SPLICE YES_LDAS 1.0235 GT 1.6895 AG 1.7819 ENST00000700709.1 1-696 ENST00000262291.9 1078-1221 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]<==>chr17|+|[0]59839768-59839911[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31462 WDR33::SAP130 ENSG00000136709.12::ENSG00000136715.19 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary star-fusion TRUE FALSE TRUE 1538 FALSE NA FALSE NA WDR33 ENSG00000136709.12 protein_coding - - chr2:127701027-127811187:- chr2:127811012:- chr2:128458601-128568761:- chr2:128568586:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127955344:- chr2:128698791-128785694:- chr2:128712918:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.13Mb] 49 6 49 6 ONLY_REF_SPLICE YES_LDAS 0.6053 GT 1.8256 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31466 RASA2::SPINK5 ENSG00000155903.14::ENSG00000133710.17 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1541 FALSE NA FALSE NA RASA2 ENSG00000155903.14 protein_coding + + chr3:141487027-141615344:+ chr3:141487216:+ chr3:141205869-141334186:+ chr3:141206058:+ SPINK5 ENSG00000133710.17 protein_coding + + chr5:148025683-148137382:+ chr5:148086405:+ chr5:147405246-147516945:+ chr5:147465968:+ chr3:141509346,chr3:141509343 chr5:148083587,chr5:148083581 NA NA chr3:141228188,chr3:141228185 chr5:147463150,chr5:147463144 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame C2-PARTIAL|39-133~|6e-23^CEP76-C2|72-113|0.0016^PH|78-95|2.2^PH_8-PARTIAL|92-133~|0.7 RIOX1_C_WH-PARTIAL|~283-299|3.6^Kazal_1|297-339|3e-08^Kazal_2|311-346|9.3e-05^CFAI_KAZAL|311-331|3^Rv3651-like_N|314-327|0.45^OTT_1508_deam|329-346|0.034^RIOX1_C_WH|334-388|1.3^R2K_2|361-383|0.093^Kazal_1|367-419|1.3e-07^Kazal_2|380-417|0.02^Rv3651-like_N|384-397|0.073^OTT_1508_deam|399-412|0.031^Kazal_1|437-477|3.7e-08^Kazal_2|451-480|0.0033^Rv3651-like_N|454-467|0.26^OTT_1508_deam|469-485|0.035^Kazal_1|496-536|2.7e-09^R2K_2|496-512|2.7^CFAI_KAZAL|505-514|1.7^Kazal_2|509-543|0.00027^Rv3651-like_N|513-526|0.15^OTT_1508_deam|529-540|1.5^RIOX1_C_WH|540-588|0.0002^R2K_2|550-581|0.0028^Kazal_1|567-608|1.3e-06^Kazal_2|581-605|0.035^Rv3651-like_N|584-597|4.1^OTT_1508_deam|599-611|0.071^Kazal_1|641-677|1.6e-09^Kazal_2|646-678|5.9e-05^CFAI_KAZAL|646-666|1.1^Rv3651-like_N|651-662|1.3^OTT_1508_deam|665-676|0.43^Kazal_1|707-751|7.1e-11^Kazal_2|720-753|1.9e-06^CFAI_KAZAL|721-741|0.034^Kazal_1|774-820|2.7e-11^Kazal_2|787-818|1.6e-05^CFAI_KAZAL|788-808|0.31^Rv3651-like_N|791-804|0.66^R2K_2|847-865|2.6^Kazal_1|849-899|4.8e-06^Kazal_2|863-886|0.022^CFAI_KAZAL|863-882|7^OTT_1508_deam|882-893|1.6^R2K_2|945-960|0.75^Kazal_1|946-984|1.2e-09^Kazal_2|959-984|7.8e-06^CFAI_KAZAL|960-980|0.015^OTT_1508_deam|979-1002|0.16^Kazal_1|1023-1076|1.6e-17^CFAI_KAZAL|1032-1057|1.2e-06^Kazal_2|1035-1076|4.6e-13^OTT_1508_deam|1054-1070|0.16 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr5] 30 6 30 6 ONLY_REF_SPLICE YES_LDAS 0.3962 GT 1.9219 AG 1.8062 ENST00000286364.9 1-133 ENST00000359874.7 283-3285 chr3|+|[0]141487084-141487216[0]<==>chr5|+|[0]148086405-148086532[1]|[2]148088542-148088605[2]|[0]148089494-148089621[1]|[2]148091165-148091228[2]|[0]148094354-148094481[1]|[2]148095818-148095905[2]|[0]148097867-148097994[1]|[2]148099234-148099315[2]|[0]148100454-148100581[1]|[2]148101355-148101436[2]|[0]148101781-148101908[1]|[2]148104952-148105000[2]|[0]148107037-148107164[1]|[2]148108753-148108837[2]|[0]148111768-148111895[1]|[2]148112868-148112934[2]|[0]148114362-148114489[1]|[2]148116370-148116466[2]|[0]148118437-148118564[1]|[2]148118986-148119058[2]|[0]148120009-148120136[1]|[2]148120295-148120391[2]|[0]148123833-148123960[1]|[2]148124765-148124837[2]|[0]148125524-148125613[2]|[0]148125723-148125850[1]|[2]148126983-148127079[2]|[0]148131259-148131389[1]|[2]148133797-148133887[2]|[0]148136983-148136991[2] atggcggcggcggcgcctgctgctgcggcggcttcttccgaggcgccagcggcgagtgcgactgcagagcccgaggccggggaccaggacagtcgcgaggttcgagtgttgcagagcctgcggggcaagatctCTGAATTGTGATGATTTTAAAAAAGGAGAAAGAGATGGGGATTTTATCTGTCCTGATTATTATGAAGCTGTTTGTGGCACAGATGGGAAAACATATGACAACAGATGTGCACTGTGTGCTGAGAATGCGAAAACCGGGTCCCAAATTGGTGTAAAAAGTGAAGGGGAATGTAAGAGCAGTAATCCAGAGCAGGATGTATGCAGTGCTTTTCGGCCCTTTGTTAGAGATGGAAGACTTGGATGCACAAGGGAAAATGATCCTGTTCTTGGTCCTGATGGGAAGACGCATGGCAATAAGTGTGCAATGTGTGCTGAGCTGTTTTTAAAAGAAGCTGAAAATGCCAAGCGAGAGGGTGAAACTAGAATTCGACGAAATGCTGAAAAGGATTTTTGCAAGGAATATGAAAAACAAGTGAGAAATGGAAGGCTTTTTTGTACACGGGAGAGTGATCCAGTCCGTGGCCCTGACGGCAGGATGCATGGCAACAAATGTGCCCTGTGTGCTGAAATTTTCAAGCAGCGTTTTTCAGAGGAAAACAGTAAAACAGATCAAAATTTGGGAAAAGCTGAAGAAAAAACTAAAGTTAAAAGAGAAATTGTGAAACTCTGCAGTCAATATCAAAATCAGGCAAAGAATGGAATACTTTTCTGTACCAGAGAAAATGACCCTATTCGTGGTCCAGATGGGAAAATGCATGGCAACTTGTGTTCCATGTGTCAAGCCTACTTCCAAGCAGAAAATGAAGAAAAGAAAAAGGCTGAAGCACGAGCTAGAAACAAAAGAGAATCTGGAAAAGCAACCTCATATGCAGAGCTTTGCAGTGAATATCGAAAGCTTGTGAGGAACGGAAAACTTGCTTGCACCAGAGAGAACGATCCTATCCAGGGCCCAGATGGGAAAGTGCATGGCAACACCTGCTCCATGTGTGAGGTCTTCTTCCAAGCAGAAGAAGAAGAAAAGAAAAAGAAGGAAGGTAAATCAAGAAACAAAAGACAATCTAAGAGTACAGCTTCCTTTGAGGAGTTGTGTAGTGAATACCGCAAATCCAGGAAAAACGGACGGCTTTTTTGCACCAGAGAGAATGACCCCATCCAGGGCCCAGATGGAAAAATGCATGGCAACACCTGCTCCATGTGTGAGGCCTTCTTTCAACAAGAAGAAAGAGCAAGAGCAAAGGCTAAAAGAGAAGCTGCAAAGGAAATCTGCAGTGAATTTCGGGACCAAGTGAGGAATGGAACACTTATATGCACCAGGGAGCATAATCCTGTCCGTGGCCCAGATGGCAAAATGCATGGAAACAAGTGTGCCATGTGTGCCAGTGTGTTCAAACTTGAAGAAGAAGAGAAGAAAAATGATAAAGAAGAAAAAGGGAAAGTCGAGGCTGAAAAAGTTAAGAGAGAAGCAGTTCAGGAGCTGTGCAGTGAATATCGTCATTATGTGAGGAATGGACGACTCCCCTGTACCAGAGAGAATGATCCTATTGAGGGTCTAGATGGGAAAATCCACGGCAACACCTGCTCCATGTGTGAAGCCTTCTTCCAGCAAGAAGCAAAAGAAAAAGAAAGAGCTGAACCCAGAGCAAAAGTCAAAAGAGAAGCTGAAAAGGAGACATGCGATGAATTTCGGAGACTTTTGCAAAATGGAAAACTTTTCTGCACAAGAGAAAATGATCCTGTGCGTGGCCCAGATGGCAAGACCCATGGCAACAAGTGTGCCATGTGTAAGGCAGTCTTCCAGAAAGAAAATGAGGAAAGAAAGAGGAAAGAAGAGGAAGATCAGAGAAATGCTGCAGGACATGGTTCCAGTGGTGGTGGAGGAGGAAACACTCAGGACGAATGTGCTGAGTATCGGGAACAAATGAAAAATGGAAGACTCAGCTGTACTCGGGAGAGTGATCCTGTACGTGATGCTGATGGCAAATCGTACAACAATCAGTGTACCATGTGTAAAGCAAAATTGGAAAGAGAAGCAGAGAGAAAAAATGAGTATTCTCGCTCCAGATCAAATGGGACTGGATCAGAATCAGGGAAGGATACATGTGATGAGTTTAGAAGCCAAATGAAAAATGGAAAACTCATCTGCACTCGAGAAAGTGACCCTGTCCGGGGTCCAGATGGCAAGACACATGGCAATAAGTGTACTATGTGTAAGGAAAAACTGGAAAGGGAAGCAGCTGAAAAAAAAAAGAAAGAGGATGAAGACAGGAGCAATACAGGAGAAAGGAGCAATACAGGAGAAAGGAGCAATGACAAAGAGGATCTGTGTCGTGAATTTCGAAGCATGCAGAGAAATGGAAAGCTTATCTGCACCAGAGAAAATAACCCTGTTCGAGGCCCATATGGCAAGATGCACATCAATAAATGTGCTATGTGTCAGAGCATCTTTGATCGAGAAGCTAATGAAAGAAAAAAGAAAGATGAAGAGAAATCAAGTAGCAAGCCCTCAAATAATGCAAAGGACCAGTGCAGACAGGTTCAGAATGAAGCGGAGGATGCAAAATTTAGACAACCTGGGCGTTCCTTGGCCTCTGTTGCCAGGATGAGTACAGATGAGTGCAGTGAATTTCGAAACTATATAAGGAACAATGAACTCATCTGCCCTAGAGAGAATGACCCAGTGCACGGTGCTGATGGAAAGTTCTATACAAACAAGTGCTACATGTGCAGAGCTGTCTTTCTAACAGAAGCTTTGGAAAGGGCAAAGCTTCAAGAAAAGCCATCCCATGTTAGAGCTTCTCAAGAGGAAGACAGCCCAGACTCTTTCAGTTCTCTGGATTCTGAGATGTGCAAAGACTACCGAGTATTGCCCAGGATAGGTTATCTTTGTCCAAAGGATTTAAAGCCTGTCTGTGGTGACGATGGCCAAACCTACAACAATCCTTGCATGCTCTGTCATGAAAACCTGATACGCCAAACAAATACACACATCCGCAGTACAGGGAAGTGTGAGGAGAGCAGCACCCCAGGAACCACCGCAGCCAGCATGCCCCCGTCTGACGAATGA MAAAAPAAAAASSEAPAASATAEPEAGDQDSREVRVLQSLRGKISEL**F*KRRKRWGFYLS*LL*SCLWHRWENI*QQMCTVC*ECENRVPNWCKK*RGM*EQ*SRAGCMQCFSALC*RWKTWMHKGK*SCSWS*WEDAWQ*VCNVC*AVFKRS*KCQARG*N*NSTKC*KGFLQGI*KTSEKWKAFLYTGE*SSPWP*RQDAWQQMCPVC*NFQAAFFRGKQ*NRSKFGKS*RKN*S*KRNCETLQSISKSGKEWNTFLYQRK*PYSWSRWENAWQLVFHVSSLLPSRK*RKEKG*STS*KQKRIWKSNLICRALQ*ISKACEERKTCLHQRERSYPGPRWESAWQHLLHV*GLLPSRRRRKEKEGR*IKKQKTI*EYSFL*GVV**IPQIQEKRTAFLHQRE*PHPGPRWKNAWQHLLHV*GLLSTRRKSKSKG*KRSCKGNLQ*ISGPSEEWNTYMHQGA*SCPWPRWQNAWKQVCHVCQCVQT*RRREEK**RRKRESRG*KS*ERSSSGAVQ*ISSLCEEWTTPLYQRE*SY*GSRWENPRQHLLHV*SLLPARSKRKRKS*TQSKSQKRS*KGDMR*ISETFAKWKTFLHKRK*SCAWPRWQDPWQQVCHV*GSLPERK*GKKEERRGRSEKCCRTWFQWWWRRKHSGRMC*VSGTNEKWKTQLYSGE*SCT*C*WQIVQQSVYHV*SKIGKRSREKK*VFSLQIKWDWIRIREGYM**V*KPNEKWKTHLHSRK*PCPGSRWQDTWQ*VYYV*GKTGKGSS*KKKERG*RQEQYRRKEQYRRKEQ*QRGSVS*ISKHAEKWKAYLHQRK*PCSRPIWQDAHQ*MCYVSEHL*SRS**KKKER*REIK*QALK*CKGPVQTGSE*SGGCKI*TTWAFLGLCCQDEYR*VQ*ISKLYKEQ*THLP*RE*PSARC*WKVLYKQVLHVQSCLSNRSFGKGKASRKAIPC*SFSRGRQPRLFQFSGF*DVQRLPSIAQDRLSLSKGFKACLW*RWPNLQQSLHALS*KPDTPNKYTHPQYREV*GEQHPRNHRSQHAPV*RM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31467 WWC2::TENM3 ENSG00000151718.16::ENSG00000218336.9 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1540 FALSE NA FALSE NA WWC2 ENSG00000151718.16 protein_coding + + chr4:183099257-183320777:+ chr4:183209025:+ chr4:184020410-184241930:+ chr4:184130178:+ TENM3 ENSG00000218336.9 protein_coding + + chr4:182143987-182803024:+ chr4:182628651:+ chr4:183065140-183724177:+ chr4:183549804:+ chr4:183236453,chr4:183236454,chr4:183236449 chr4:182610959,chr4:182610831,chr4:182610952 NA NA chr4:184157606,chr4:184157607,chr4:184157602 chr4:183532112,chr4:183531984,chr4:183532105 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WW|12-41|1.2e-14^WW|59-88|8.7e-12^Phage_Nu1|330-392|0.7 EGF_2-PARTIAL|~750-773|0.00015^EGF_Tenascin-PARTIAL|~750-773|7^EGF_2|803-812|7^CarboxypepD_reg|867-929|3.3e-06^NHL|1183-1192|3.6^NHL|1220-1237|0.025^NHL|1284-1298|0.014^NHL|1344-1363|0.0053^EGF_2|1450-1460|7^NHL|1473-1496|0.00014^RHS_repeat|1547-1582|0.00028^NHL|1556-1565|5.2^RHS_repeat|1615-1647|5.2e-07^RHS_repeat|1843-1864|4.7e-06^RHS_repeat|1877-1895|0.012^RHS_repeat|1955-1972|0.34^RHS_repeat|2018-2030|0.3^CarboxypepD_reg|2100-2123|4.6^RHS_repeat|2105-2114|0.11^RHS_repeat|2132-2159|0.0002^RHS_repeat|2153-2186|0.16^RHS_repeat|2207-2243|8.5e-08^RHS_repeat|2259-2281|3.3^Tox-GHH|2615-2692|3.1e-36 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.30Mb] 25 21 25 21 ONLY_REF_SPLICE YES_LDAS 0.5062 GT 1.8295 AG 1.8062 ENST00000513834.5 1-522 ENST00000511685.6 750-8100 chr4|+|[0]183099492-183099622[1]|[2]183193599-183193708[0]|[1]183207953-183208156[0]|[1]183208949-183209025[2]<==>chr4|+|[2]182628651-182628889[0]|[1]182653771-182653893[0]|[1]182673005-182673219[2]|[0]182679666-182679876[0]|[1]182680248-182680349[0]|[1]182680543-182680737[0]|[1]182681814-182682014[0]|[1]182688166-182688351[0]|[1]182714087-182714233[0]|[1]182728965-182729181[1]|[2]182730200-182730319[1]|[2]182730878-182731139[2]|[0]182736808-182737075[0]|[1]182738401-182738544[0]|[1]182743170-182743419[1]|[2]182751800-182752032[0]|[1]182753450-182753604[2]|[0]182754385-182755259[1]|[2]182773472-182773647[0]|[1]182774918-182775153[2]|[0]182789093-182789389[2]|[0]182792274-182793885[0]|[1]182796637-182796767[2]|[0]182799596-182800351[2] atgcctaggagggccgggagcggtcagctgccgctgccccggggctgggaggaggccagggactacgacggcaaggtcttctacattgaccacaacaccaggaggaccagctggatcgacccccgggacaggttaacgaagcccttgtcatttgctgattgtgttggggatgagctgccgtggggatgggaagcagggtttgaccctcagattggtgtctactacatcgatcacatcaacaaaaccacgcagatagaagatccaagaaaacaatggaggggggaacaggagaagatgctcaaggactacctctctgtggcacaggatgccctccggacacagaaggaactgtaccatgtgaaggagcagaggctggcgctggccctggatgaatacgtgcgattaaatgatgcctataaggaaaagtcaagttctcacacaagcttattctcaggatcttcatccagtactaaatatgatcccgatattttaaaagctgagatctccactacaagattaaggGCATTTCCTATTCAAAACAGGAACAGGTACAACGCCACTGTTCAGTACTGCAACCCCAGGATACACAATGGCATCTGGCTCTGTTTATTCACCACCTACTCGGCCACTACCTAGAAACACCCTATCAAGAAGTGCTTTTAAATTCAAGAAGTCTTCAAAGTACTGTAGCTGGAAATGCACTGCACTGTGTGCCGTAGGGGTCTCGGTGCTCCTGGCAATACTCCTGTCTTATTTTATAGCAATGCATCTCTTTGGCCTCAACTGGCAGCTACAGCAGACTGAAAATGACACATTTGAGAATGGAAAAGTGAATTCTGATACCATGCCAACAAACACTGTGTCATTACCTTCTGGAGACAATGGAAAATTAGGTGGATTTACGCAAGAAAATAACACCATAGATTCCGGAGAACTTGATATTGGCCGAAGAGCAATTCAAGAGATTCCTCCCGGGATCTTCTGGAGATCACAGCTCTTCATTGATCAGCCACAGTTTCTTAAATTCAATATCTCTCTTCAGAAGGATGCATTGATTGGAGTATATGGCCGGAAAGGCTTACCGCCTTCCCATACTCAGTATGACTTCGTGGAGCTCCTGGATGGCAGCAGGCTGATTGCCAGAGAGCAGCGGAGCCTGCTTGAGACGGAGAGAGCCGGGCGGCAGGCGAGATCCGTCAGCCTTCATGAGGCCGGCTTTATCCAGTACTTGGATTCTGGAATCTGGCATCTGGCTTTTTATAATGATGGGAAAAATGCAGAGCAGGTGTCTTTTAATACCATTGTTATAGAGTCTGTGGTGGAATGTCCCCGAAATTGCCATGGAAATGGAGAATGCGTTTCTGGAACTTGCCATTGTTTTCCAGGATTTCTGGGTCCGGATTGTTCAAGAGCCGCCTGTCCAGTGTTATGTAGTGGCAACGGGCAGTACTCCAAGGGCCGCTGCCTGTGTTTCAGCGGCTGGAAGGGCACCGAGTGTGATGTGCCGACTACCCAGTGTATTGACCCACAGTGTGGGGGTCGTGGGATTTGTATCATGGGCTCTTGTGCTTGCAACTCAGGATACAAAGGAGAAAGTTGTGAAGAAGCTGACTGTATAGACCCTGGGTGTTCTAATCATGGTGTGTGTATCCACGGGGAATGTCACTGCAGTCCAGGATGGGGAGGTAGCAATTGTGAAATACTGAAGACCATGTGTCCAGACCAGTGCTCCGGCCACGGAACGTATCTTCAAGAAAGTGGCTCCTGCACGTGTGACCCTAACTGGACTGGCCCAGACTGCTCAAACGAAATATGTTCTGTGGACTGTGGCTCACACGGCGTTTGCATGGGGGGGACGTGTCGCTGTGAAGAAGGCTGGACGGGCCCAGCCTGTAATCAGAGAGCCTGCCACCCCCGCTGTGCCGAGCACGGGACCTGCAAGGATGGCAAGTGTGAATGCAGCCAGGGCTGGAATGGAGAGCACTGCACTATCGAGGGTTGTCCTGGTCTGTGCAACAGCAATGGAAGATGTACCCTGGACCAAAATGGCTGGCATTGTGTGTGCCAGCCTGGATGGAGAGGAGCAGGCTGTGACGTAGCCATGGAGACTCTTTGCACAGATAGCAAGGACAATGAAGGAGATGGACTCATTGACTGCATGGATCCCGATTGCTGCCTACAGAGTTCCTGCCAGAATCAGCCCTATTGTCGGGGACTGCCGGATCCTCAGGACATCATTAGCCAAAGCCTTCAATCGCCTTCTCAGCAAGCTGCCAAATCCTTTTATGATCGAATCAGTTTCCTTATAGGATCTGATAGCACCCATGTTATACCTGGAGAAAGTCCTTTCAATAAGAGCCTTGCATCTGTCATCAGAGGCCAAGTACTGACTGCTGATGGAACTCCACTTATTGGAGTAAATGTCTCGTTTTTCCATTACCCAGAATATGGATATACTATTACCCGCCAGGACGGAATGTTTGACTTGGTGGCAAATGGTGGGGCCTCTCTAACTTTGGTATTTGAACGATCCCCATTCCTCACTCAGTATCATACTGTGTGGATTCCATGGAATGTCTTTTATGTGATGGATACCCTAGTCATGAAGAAAGAAGAGAATGACATTCCCAGCTGTGATCTGAGTGGATTCGTGAGGCCAAATCCCATCATTGTGTCATCACCTTTATCCACCTTTTTCAGATCTTCTCCTGAAGACAGTCCCATCATTCCCGAAACACAGGTACTCCACGAGGAAACTACAATTCCAGGAACAGATTTGAAACTCTCCTACTTGAGTTCCAGAGCTGCAGGGTATAAGTCAGTTCTCAAGATCACCATGACCCAGTCTATTATTCCATTTAATTTAATGAAGGTTCATCTTATGGTAGCTGTAGTAGGAAGACTCTTCCAAAAGTGGTTTCCTGCCTCACCAAACTTGGCCTATACTTTCATATGGGATAAAACAGATGCATATAATCAGAAAGTCTATGGTCTATCTGAAGCTGTTGTGTCAGTTGGATATGAGTATGAGTCGTGTTTGGACCTGACTCTGTGGGAAAAGAGGACTGCCATTCTGCAGGGCTATGAATTGGATGCGTCCAACATGGGTGGCTGGACATTAGATAAACATCACGTGCTGGATGTACAGAACGGTATACTGTACAAGGGAAACGGGGAAAACCAGTTCATCTCCCAGCAGCCTCCAGTCGTGAGTAGCATCATGGGCAATGGGCGAAGGCGCAGCATTTCCTGCCCCAGTTGCAATGGTCAAGCTGATGGTAACAAGTTACTGGCCCCAGTGGCGCTAGCTTGTGGGATCGATGGCAGTCTGTACGTAGGCGATTTCAACTATGTGCGGCGGATATTCCCTTCTGGAAATGTAACAAGTGTCTTAGAACTAAGCAGCAACCCAGCTCATAGATACTACCTTGCAACGGATCCAGTCACGGGAGATCTGTACGTTTCTGACACAAACACCCGCAGAATTTATCGCCCAAAGTCACTTACGGGGGCAAAAGACTTGACTAAAAATGCAGAAGTCGTCGCAGGGACAGGGGAGCAATGCCTTCCGTTTGACGAGGCGAGATGTGGGGATGGAGGGAAGGCCGTGGAAGCCACACTCATGAGTCCCAAAGGAATGGCAGTTGATAAGAATGGATTAATCTACTTTGTTGATGGAACCATGATTAGGAAAGTTGACCAAAATGGAATCATATCAACTCTTCTGGGCTCTAACGATTTGACTTCAGCCAGACCTTTAACTTGTGACACCAGCATGCACATCAGCCAGGTACGTCTGGAATGGCCCACTGACCTAGCCATTAACCCTATGGATAACTCCATTTATGTCCTGGATAATAATGTAGTTTTACAGATCACTGAAAATCGTCAAGTTCGCATTGCTGCTGGACGGCCCATGCACTGTCAGGTTCCCGGAGTGGAATATCCTGTGGGGAAGCACGCGGTGCAGACAACACTGGAATCAGCCACTGCCATTGCTGTGTCCTACAGTGGGGTCCTGTACATTACTGAAACTGATGAGAAGAAAATTAACCGGATAAGGCAGGTCACAACAGATGGAGAAATCTCCTTAGTGGCCGGAATACCTTCAGAGTGTGACTGCAAAAATGATGCCAACTGTGACTGTTACCAGAGTGGAGATGGCTACGCCAAGGATGCCAAACTCAGTGCCCCATCCTCCCTGGCTGCTTCTCCAGATGGTACACTGTATATTGCAGATCTAGGGAATATCCGGATCCGGGCTGTGTCAAAGAATAAGCCTTTACTTAACTCTATGAACTTCTATGAAGTTGCGTCTCCAACTGATCAAGAACTCTACATCTTTGACATCAATGGTACTCACCAATATACTGTAAGTTTAGTCACTGGTGATTACCTTTACAATTTTAGCTACAGCAATGACAATGATATTACTGCTGTGACAGACAGCAATGGCAACACCCTTAGAATTAGACGGGACCCAAATCGCATGCCAGTTCGAGTGGTGTCTCCTGATAACCAAGTGATATGGTTGACAATAGGAACAAATGGATGTTTGAAAAGCATGACTGCTCAAGGACTGGAATTAGTTTTGTTTACTTACCATGGCAATAGTGGCCTTTTAGCCACTAAAAGTGATGAAACTGGATGGACAACGTTTTTTGACTATGACAGTGAAGGTCGTCTGACAAATGTTACGTTTCCAACTGGAGTGGTCACAAACCTGCATGGGGACATGGACAAGGCTATCACAGTGGACATTGAGTCATCTAGCCGAGAAGAAGATGTCAGCATCACTTCAAATCTGTCCTCGATCGATTCTTTCTACACCATGGTTCAAGATCAGTTAAGAAACAGCTACCAGATTGGTTATGACGGCTCCCTCAGAATTATCTACGCCAGTGGCCTGGACTCACACTACCAAACAGAGCCGCACGTTCTGGCTGGCACCGCTAATCCGACGGTTGCCAAAAGAAACATGACTTTGCCTGGCGAGAACGGTCAAAACTTGGTGGAATGGAGATTCCGAAAAGAGCAAGCCCAAGGGAAAGTCAATGTCTTTGGCCGCAAGCTCAGGGTTAATGGCAGAAACCTCCTTTCAGTTGACTTTGATCGAACAACAAAGACAGAAAAGATCTATGACGACCACCGTAAATTTCTACTGAGGATCGCCTACGACACGTCTGGGCACCCGACTCTCTGGCTGCCAAGCAGCAAGCTGATGGCCGTCAATGTCACCTATTCATCCACAGGTCAAATTGCCAGCATCCAGCGAGGCACCACTAGCGAGAAAGTAGATTATGACGGACAGGGGAGGATCGTGTCTCGGGTCTTTGCTGATGGTAAAACATGGAGTTACACATATTTAGAAAAGTCCATGGTTCTTCTGCTTCATAGCCAGCGGCAGTACATCTTCGAATACGATATGTGGGACCGCCTGTCTGCCATCACCATGCCCAGTGTGGCTCGCCACACCATGCAGACCATCCGATCCATTGGCTACTACCGCAACATATACAACCCCCCGGAAAGCAACGCCTCCATCATCACGGACTACAACGAGGAAGGGCTGCTTCTACAAACAGCTTTCTTGGGTACAAGTCGGAGGGTCTTATTCAAATACAGAAGGCAGACTAGGCTCTCAGAAATTTTATATGATAGCACAAGAGTCAGTTTTACCTATGATGAAACAGCAGGAGTCCTAAAGACAGTAAACCTCCAGAGTGATGGTTTTATTTGCACCATTAGATACAGGCAAATTGGTCCCCTGATTGACAGGCAGATTTTCCGCTTTAGTGAAGATGGGATGGTAAATGCAAGATTTGACTATAGCTATGACAACAGCTTTCGAGTGACCAGCATGCAGGGTGTGATCAATGAAACGCCACTGCCTATTGATCTGTATCAGTTTGATGACATTTCTGGCAAAGTTGAGCAGTTTGGAAAGTTTGGAGTTATATATTATGATATTAACCAGATCATTTCTACAGCTGTAATGACCTATACGAAGCACTTTGATGCTCATGGCCGTATCAAGGAGATTCAATATGAGATATTCAGGTCGCTCATGTACTGGATTACAATTCAGTATGATAACATGGGTCGGGTAACCAAGAGAGAGATTAAAATAGGGCCCTTTGCCAACACCACCAAATATGCTTATGAATATGATGTTGATGGACAGCTCCAAACAGTTTACCTCAATGAAAAGATAATGTGGCGGTACAACTACGATCTGAATGGAAACCTCCATTTACTGAACCCAAGTAACAGTGCGCGTCTGACACCCCTTCGCTATGACCTGCGAGACAGAATCACTCGACTGGGTGATGTTCAATATCGGTTGGATGAAGATGGTTTCCTACGTCAAAGGGGCACGGAAATCTTTGAATATAGCTCCAAGGGGCTTCTAACTCGAGTTTACAGTAAAGGCAGTGGCTGGACAGTGATCTACCGTTATGACGGCCTGGGAAGGCGTGTTTCTAGCAAAACCAGTCTAGGACAGCACCTGCAGTTTTTTTATGCTGACTTAACTTATCCCACTAGGATTACTCATGTCTACAACCATTCGAGTTCAGAAATTACCTCCCTGTATTATGATCTCCAAGGACATCTTTTTGCCATGGAAATCAGCAGTGGGGATGAATTCTATATTGCATCGGATAACACAGGGACACCACTGGCTGTGTTCAGTAGCAATGGGCTTATGCTGAAACAGATTCAGTACACTGCATATGGGGAAATCTATTTTGACTCTAATATTGACTTTCAACTGGTAATTGGATTTCATGGTGGCCTGTATGACCCACTCACCAAATTAATCCACTTTGGAGAAAGAGATTATGACATTTTGGCAGGACGGTGGACAACACCTGACATAGAAATCTGGAAAAGAATTGGGAAGGACCCAGCTCCTTTTAACTTGTACATGTTTAGGAATAACAACCCTGCAAGCAAAATCCATGACGTGAAAGATTACATCACAGATGTTAACAGCTGGCTGGTGACATTTGGTTTCCATCTGCACAATGCTATTCCTGGATTCCCTGTTCCCAAATTTGATTTAACAGAACCTTCTTACGAACTTGTGAAGAGTCAGCAGTGGGATGATATACCGCCCATCTTCGGAGTCCAGCAGCAAGTGGCGCGGCAGGCCAAGGCCTTCCTGTCGCTGGGGAAGATGGCCGAGGTGCAGGTGAGCCGGCGCCGGGCCGGCGGCGCGCAGTCCTGGCTGTGGTTCGCCACGGTCAAGTCGCTGATCGGCAAGGGCGTCATGCTGGCCGTCAGCCAGGGCCGCGTGCAGACCAACGTGCTCAACATCGCCAACGAGGACTGCATCAAGGTGGCGGCCGTGCTCAACAACGCCTTCTACCTGGAGAACCTGCACTTCACCATCGAGGGCAAGGACACGCACTACTTCATCAAGACCACCACGCCCGAGAGCGACCTGGGCACGCTGCGGTTGACCAGCGGCCGCAAGGCGCTGGAGAACGGCATCAACGTGACGGTGTCGCAGTCCACCACGGTGGTGAACGGCAGGACGCGCAGGTTCGCGGACGTGGAGATGCAGTTCGGCGCGCTGGCGCTGCACGTGCGCTACGGCATGACCCTGGACGAGGAGAAGGCGCGCATCCTGGAGCAGGCGCGGCAGCGCGCGCTCGCCCGGGCCTGGGCGCGCGAGCAGCAGCGCGTGCGCGACGGCGAGGAGGGCGCGCGCCTCTGGACGGAGGGCGAGAAGCGGCAGCTGCTGAGCGCCGGCAAGGTGCAGGGCTACGACGGGTACTACGTACTCTCGGTGGAGCAGTACCCCGAGCTGGCCGACAGCGCCAACAACATCCAGTTCCTGCGGCAGAGCGAGATCGGCAGGAGGTAA MPRRAGSGQLPLPRGWEEARDYDGKVFYIDHNTRRTSWIDPRDRLTKPLSFADCVGDELPWGWEAGFDPQIGVYYIDHINKTTQIEDPRKQWRGEQEKMLKDYLSVAQDALRTQKELYHVKEQRLALALDEYVRLNDAYKEKSSSHTSLFSGSSSSTKYDPDILKAEISTTRLRAFPIQNRNRYNATVQYCNPRIHNGIWLCLFTTYSATT*KHPIKKCF*IQEVFKVL*LEMHCTVCRRGLGAPGNTPVLFYSNASLWPQLAATAD*K*HI*EWKSEF*YHANKHCVITFWRQWKIRWIYARK*HHRFRRT*YWPKSNSRDSSRDLLEITALH*SATVS*IQYLSSEGCIDWSIWPERLTAFPYSV*LRGAPGWQQADCQRAAEPA*DGESRAAGEIRQPS*GRLYPVLGFWNLASGFL**WEKCRAGVF*YHCYRVCGGMSPKLPWKWRMRFWNLPLFSRISGSGLFKSRLSSVM*WQRAVLQGPLPVFQRLEGHRV*CADYPVY*PTVWGSWDLYHGLLCLQLRIQRRKL*RS*LYRPWVF*SWCVYPRGMSLQSRMGR*QL*NTEDHVSRPVLRPRNVSSRKWLLHV*P*LDWPRLLKRNMFCGLWLTRRLHGGDVSL*RRLDGPSL*SESLPPPLCRARDLQGWQV*MQPGLEWRALHYRGLSWSVQQQWKMYPGPKWLALCVPAWMERSRL*RSHGDSLHR*QGQ*RRWTH*LHGSRLLPTEFLPESALLSGTAGSSGHH*PKPSIAFSASCQILL*SNQFPYRI**HPCYTWRKSFQ*EPCICHQRPSTDC*WNSTYWSKCLVFPLPRIWIYYYPPGRNV*LGGKWWGLSNFGI*TIPIPHSVSYCVDSMECLLCDGYPSHEERRE*HSQL*SEWIREAKSHHCVITFIHLFQIFS*RQSHHSRNTGTPRGNYNSRNRFETLLLEFQSCRV*VSSQDHHDPVYYSI*FNEGSSYGSCSRKTLPKVVSCLTKLGLYFHMG*NRCI*SESLWSI*SCCVSWI*V*VVFGPDSVGKEDCHSAGL*IGCVQHGWLDIR*TSRAGCTERYTVQGKRGKPVHLPAASSRE*HHGQWAKAQHFLPQLQWSS*W*QVTGPSGASLWDRWQSVRRRFQLCAADIPFWKCNKCLRTKQQPSS*ILPCNGSSHGRSVRF*HKHPQNLSPKVTYGGKRLD*KCRSRRRDRGAMPSV*RGEMWGWREGRGSHTHESQRNGS**EWINLLC*WNHD*ES*PKWNHINSSGL*RFDFSQTFNL*HQHAHQPGTSGMAH*PSH*PYG*LHLCPG**CSFTDH*KSSSSHCCWTAHALSGSRSGISCGEARGADNTGISHCHCCVLQWGPVHY*N**EEN*PDKAGHNRWRNLLSGRNTFRV*LQK*CQL*LLPEWRWLRQGCQTQCPILPGCFSRWYTVYCRSREYPDPGCVKE*AFT*LYELL*SCVSN*SRTLHL*HQWYSPIYCKFSHW*LPLQF*LQQ*Q*YYCCDRQQWQHP*N*TGPKSHASSSGVS**PSDMVDNRNKWMFEKHDCSRTGISFVYLPWQ*WPFSH*K**NWMDNVF*L*Q*RSSDKCYVSNWSGHKPAWGHGQGYHSGH*VI*PRRRCQHHFKSVLDRFFLHHGSRSVKKQLPDWL*RLPQNYLRQWPGLTLPNRAARSGWHR*SDGCQKKHDFAWRERSKLGGMEIPKRASPRESQCLWPQAQG*WQKPPFS*L*SNNKDRKDL*RPP*ISTEDRLRHVWAPDSLAAKQQADGRQCHLFIHRSNCQHPARHH*RESRL*RTGEDRVSGLC*W*NMELHIFRKVHGSSAS*PAAVHLRIRYVGPPVCHHHAQCGSPHHADHPIHWLLPQHIQPPGKQRLHHHGLQRGRAASTNSFLGYKSEGLIQIQKAD*ALRNFI**HKSQFYL**NSRSPKDSKPPE*WFYLHH*IQANWSPD*QADFPL**RWDGKCKI*L*L*QQLSSDQHAGCDQ*NATAY*SVSV**HFWQS*AVWKVWSYIL*Y*PDHFYSCNDLYEAL*CSWPYQGDSI*DIQVAHVLDYNSV**HGSGNQERD*NRALCQHHQICL*I*C*WTAPNSLPQ*KDNVAVQLRSEWKPPFTEPK*QCASDTPSL*PARQNHSTG*CSISVG*RWFPTSKGHGNL*I*LQGASNSSLQ*RQWLDSDLPL*RPGKACF*QNQSRTAPAVFLC*LNLSH*DYSCLQPFEFRNYLPVL*SPRTSFCHGNQQWG*ILYCIG*HRDTTGCVQ*QWAYAETDSVHCIWGNLF*L*Y*LSTGNWISWWPV*PTHQINPLWRKRL*HFGRTVDNT*HRNLEKNWEGPSSF*LVHV*E*QPCKQNP*RERLHHRC*QLAGDIWFPSAQCYSWIPCSQI*FNRTFLRTCEESAVG*YTAHLRSPAASGAAGQGLPVAGEDGRGAGEPAPGRRRAVLAVVRHGQVADRQGRHAGRQPGPRADQRAQHRQRGLHQGGGRAQQRLLPGEPALHHRGQGHALLHQDHHARERPGHAAVDQRPQGAGERHQRDGVAVHHGGERQDAQVRGRGDAVRRAGAARALRHDPGRGEGAHPGAGAAARARPGLGARAAARARRRGGRAPLDGGREAAAAERRQGAGLRRVLRTLGGAVPRAGRQRQQHPVPAAERDRQEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31469 FCHSD2::UVRAG ENSG00000137478.15::ENSG00000198382.9 OVCAR8 SRR8615871 SRR8670726 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1542 FALSE NA FALSE NA FCHSD2 ENSG00000137478.15 protein_coding - - chr11:72836745-73142318:- chr11:72984088:- chr11:72547790-72853363:- chr11:72695133:- UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76065710:+ chr11:75526255-75855276:+ chr11:75776754:+ chr11:72924927,chr11:72924903,chr11:72924902,chr11:72924876,chr11:72924864 chr11:76059631,chr11:76059631,chr11:76059631,chr11:76059631,chr11:76059631 NA NA chr11:72635972,chr11:72635948,chr11:72635947,chr11:72635921,chr11:72635909 chr11:75770675,chr11:75770675,chr11:75770675,chr11:75770675,chr11:75770675 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cortex-I_coil|8-27|0.1^FCH|21-102|1e-20^DUF6781|113-158|7.5e-06^Cortex-I_coil|118-173|0.049^FCH|157-173|0.54^DUF6781|230-280|2.4^hSH3|234-245|6.5^DUF6781|370-406|0.17^Cortex-I_coil|370-417|0.0005^FCH|430-443|6.2^Cortex-I_coil|430-448|2.6^SH3_2|498-550|2.5e-11^SH3_1|500-545|2.2e-14^SH3_9|500-550|3.7e-12^hSH3|505-549|1.2e-05^SH3_3|518-550|3.1e-05^SH3_2|595-650|8e-12^SH3_1|597-645|1.5e-15^SH3_9|598-649|2.7e-16 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:2.67Mb] 18 6 18 6 ONLY_REF_SPLICE YES_LDAS 0.2641 GT 1.7819 AG 1.8323 ENST00000409314.5 1-705 ENST00000531818.5 111-984 chr11|-|[2]72984088-72984216[0]|[2]72985062-72985116[2]|[1]72988964-72989097[0]|[2]73000990-73001134[2]|[1]73015809-73015885[0]|[2]73083695-73083740[2]|[1]73140031-73140128[0]|[2]73141857-73141877[0]<==>chr11|+|[2]76065710-76065788[2]|[0]76115924-76116015[1]|[2]76140711-76141413[2] atgcagccgccgccgaggaaggtgaaagttacacaagaactgaaaaacattcaagttgagcagatgacaaaacttcaagccaaacatcaagcagaatgtgatttgcttgaagatatgaggacattcagtcagaagaaggctgctattgaaagagagtatgcacagggtatgcagaagttggctagtcaatacctgaagagagattggcctggagtaaaagctgatgatcggaatgattacaggagcatgtatcccgtttggaaatcttttctcgagggaacaatgcaggtagcccagtctcggatgaatatatgtgaaaactataaaaacttcatttctgagcctgcaaggacagtgagaagcttaaaagaacagcaactaaaaaggtgtgtggaccagttgacaaagatccaaactgaattacaagagacagtgaaagatttagctaaaggcaaaaagaaatactttgagactgaacagatggctcatgcagtacgagagaaagctgacatcgaggcaaaatctaaacttagtctttttcaatcaagaatcagtttacagaaggcaagtgtaaagttaaaagcccggcgatctgagtgtaattccaaagctacccacgcaaggaatgattatcttcttaccctagcggcagcaaatgcacatcaggatcgctactatcaaacagatttagttaacattatgaagGTTTCCACTGTATCCAAAAGGAGGGGAGAAGTTGCAGTTTGATTATGGTGTCTATCTTCTGAACAAAAATATAGCACAGCTAAGATATCAACATGGACTAGGGACTCCAGACTTGCGGCAAACCCTTCCCAACCTGAAAAACTTCATGGAGCATGGACTAATGGTCAGGTGTGACAGACATCACACCTCCAGTGCAATCCCTGTTCCTAAGAGACAAAGCTCCATATTTGGGGGTGCAGATGTAGGCTTCTCTGGGGGGATCCCTTCACCAGACAAAGGACATCGAAAACGGGCCAGCTCTGAGAATGAGAGACTTCAGTACAAAACCCCTCCTCCCAGTTACAACTCAGCATTAGCCCAGCCTGTGACCACCGTCCCCTCCATGGGAGAGACCGAGAGAAAGATAACATCTCTATCCTCCTCCTTGGATACCTCCTTGGACTTCTCCAAAGAAAACAAGAAAAAAGGAGAGGATCTAGTTGGCAGCTTAAACGGAGGCCACGCGAATGTGCACCCTAGCCAAGAACAAGGAGAAGCCCTCTCCGGGCACCGGGCCACAGTCAATGGCACTCTCCTACCCAGCGAGCAGGCCGGGTCCGCCAGTGTCCAGCTTCCAGGCGAGTTCCACCCAGTCTCAGAAGCTGAGCTCTGCTGTACTGTGGAGCAAGCAGAAGAAATCATCGGGCTGGAAGCCACAGGTTTCGCCTCAGGTGATCAGCTAGAAGCATTTAACTGCATCCCAGTGGACAGTGCTGTGGCAGTAGAGTGTGACGAACAAGTTCTGGGAGAATTTGAAGAGTTCTCCCGAAGGATCTATGCACTGAATGAAAACGTATCCAGCTTCCGCCGGCCGCGCAGGAGTTCCGATAAGTGA MQPPPRKVKVTQELKNIQVEQMTKLQAKHQAECDLLEDMRTFSQKKAAIEREYAQGMQKLASQYLKRDWPGVKADDRNDYRSMYPVWKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKVSTVSKRRGEVAV*LWCLSSEQKYSTAKISTWTRDSRLAANPSQPEKLHGAWTNGQV*QTSHLQCNPCS*ETKLHIWGCRCRLLWGDPFTRQRTSKTGQL*E*ETSVQNPSSQLQLSISPACDHRPLHGRDREKDNISILLLGYLLGLLQRKQEKRRGSSWQLKRRPRECAP*PRTRRSPLRAPGHSQWHSPTQRAGRVRQCPASRRVPPSLRS*ALLYCGASRRNHRAGSHRFRLR*SARSI*LHPSGQCCGSRV*RTSSGRI*RVLPKDLCTE*KRIQLPPAAQEFR*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31476 TBL1XR1::LINC01208 ENSG00000177565.19::ENSG00000223715.3 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1544 FALSE NA FALSE NA TBL1XR1 ENSG00000177565.19 protein_coding - - chr3:177019340-177228000:- chr3:177098466:- chr3:176737128-176945788:- chr3:176816254:- LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:177085593,chr3:177085597,chr3:177085595 chr3:176468242,chr3:176468243,chr3:176468204 NA NA chr3:176803381,chr3:176803385,chr3:176803383 chr3:176186030,chr3:176186031,chr3:176185992 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr3:0.38Mb] 600 378 600 378 ONLY_REF_SPLICE YES_LDAS 13.0907 GT 1.9656 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transducin (beta)-like 1 X-linked receptor 1 1 Yes splenic marginal zone lymphoma, primary central nervous system lymphoma, colorectal carcinoma, gallbladder carcinoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, TSG, fusion frameshift, missense, translocation FALSE NA NA NA NA NA NA NA NA NA 31482 EIF2AK2::CEBPZ ENSG00000055332.19::ENSG00000115816.15 OV7 SRR8615873 SRR8670744 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1546 FALSE NA FALSE NA EIF2AK2 ENSG00000055332.19 protein_coding - - chr2:37099210-37157522:- chr2:37119959:- chr2:37326353-37384665:- chr2:37347102:- CEBPZ ENSG00000115816.15 protein_coding - - chr2:37201612-37231596:- chr2:37203008:- chr2:37428755-37458739:- chr2:37430151:- chr2:37117380,chr2:37117384 chr2:37207327,chr2:37207328 NA NA chr2:37344523,chr2:37344527 chr2:37434470,chr2:37434471 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame dsrm|13-75|4.6e-19^DND1_DSRM|32-75|1.6e-05^Dicer_dsRBD|40-79|0.00014^PK_Tyr_Ser-Thr|58-124|1.6^dsrm|101-164|8.4e-17^Dicer_dsRBD|142-162|2.4^DND1_DSRM|148-159|1.3^Pox_ser-thr_kin|260-307|0.014^dsrm|261-297|0.11^Kinase-like|267-313|0.04^Pkinase|268-534|1.1e-55^ABC1|268-299|0.001^PK_Tyr_Ser-Thr|270-326|5.6e-07^PK_Tyr_Ser-Thr|359-536|8.3e-32^Kdo|374-426|3.2e-05^Kinase-like|385-462|4.6e-07^ABC1|389-445|3.9e-06^Pkinase_fungal|390-464|2.2e-05^Pox_ser-thr_kin|407-427|0.0025^dsrm|512-530|5.8 none ["EIF2AK2:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr2:0.04Mb];LOCAL_REARRANGEMENT:-:[44547] 11 9 11 9 ONLY_REF_SPLICE YES_LDAS 0.2677 GT 1.8892 AG 1.3383 ENST00000681507.1 1-1248 ENST00000234170.10 2885-3165 chr2|-|[2]37119959-37120139[2]|[1]37122506-37122664[2]|[1]37126289-37126411[2]|[1]37135484-37135546[2]|[1]37136983-37137017[0]|[2]37138270-37138363[2]|[1]37138509-37138585[0]|[2]37139631-37139757[2]|[1]37141553-37141701[0]|[2]37146853-37146973[2]|[1]37147688-37147806[0]<==>chr2|-|[2]37201764-37201903[1]|[0]37202784-37202865[0]|[2]37202950-37203008[1] atggctggtgatctttcagcaggtttcttcatggaggaacttaatacataccgtcagaagcagggagtagtacttaaatatcaagaactgcctaattcaggacctccacatgataggaggtttacatttcaagttataatagatggaagagaatttccagaaggtgaaggtagatcaaagaaggaagcaaaaaatgccgcagccaaattagctgttgagatacttaataaggaaaagaaggcagttagtcctttattattgacaacaacgaattcttcagaaggattatccatggggaattacataggccttatcaatagaattgcccagaagaaaagactaactgtaaattatgaacagtgtgcatcgggggtgcatgggccagaaggatttcattataaatgcaaaatgggacagaaagaatatagtattggtacaggttctactaaacaggaagcaaaacaattggccgctaaacttgcatatcttcagatattatcagaagaaacctcagtgaaatctgactacctgtcctctggttcttttgctactacgtgtgagtcccaaagcaactctttagtgaccagcacactcgcttctgaatcatcatctgaaggtgacttctcagcagatacatcagagataaattctaacagtgacagtttaaacagttcttcgttgcttatgaatggtctcagaaataatcaaaggaaggcaaaaagatctttggcacccagatttgaccttcctgacatgaaagaaacaaagtatactgtggacaagaggtttggcatggattttaaagaaatagaattaattggctcaggtggatttggccaagttttcaaagcaaaacacagaattgacggaaagacttacgttattaaacgtgttaaatataataacgagaaggcggagcgtgaagtaaaagcattggcaaaacttgatcatgtaaatattgttcactacaatggctgttgggatggatttgattatgatcctgagaccagtgatgattctcttgagagcagtgattatgatcctgagaacagcaaaaatagttcaaggtcaaagactaagtgccttttcatccaaatggaattctgtgataaagggaccttggaacaatggattgaaaaaagaagaggcgagaaactagacaaagttttggctttggaactctttgaacaaataacaaaaggggtggattatatacattcaaaaaaattaattcatagagatcttaagGGCCAAGAAAAAAGAAAAGAAACTTAAATGATTCCAGCCTATTTGTATCTGCTGAAGAGTTTGGCCATCTATTGGATGAAAATATGGGATCCAAGTTTGATAACATTGGCATGAATGCCATGGCTAACAAAGATAATGCAAGTCTCAAACAGCTTAGATGGGAGGCTGAACGTGATGACTGGCTACACAACAGAGATGCAAAAAGTATCATCAAGAAAAAGAAACATTTTAAAAAGAAGAGGATTAAAACCACTCAAAAAACTAAAAAACAAAGGAAATGA MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSGSFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAKRSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKGQEKRKET*MIPAYLYLLKSLAIYWMKIWDPSLITLA*MPWLTKIMQVSNSLDGRLNVMTGYTTEMQKVSSRKRNILKRRGLKPLKKLKNKGN FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Interferon-induced Other PEK P19525 FALSE NA NA NA NA NA NA TRUE Breast,Bladder no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma BREAST,BLADDER no_match 37349649,37362627|37362627 FALSE,FALSE|FALSE 37429046,37430151|37429046 FALSE,TRUE|FALSE YES,PARTIALLY Out-of-frame,Out-of-frame TRUE Bladder BLADDER no_match 37135484 FALSE 37206105 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31486 TM2D2::ADAM9 ENSG00000169490.17::ENSG00000168615.13 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TM2D2 ENSG00000169490.17 protein_coding - - chr8:38988808-38996824:- chr8:38996419:- chr8:38846327-38854343:- chr8:38853938:- ADAM9 ENSG00000168615.13 protein_coding + + chr8:38996754-39105445:+ chr8:39007886:+ chr8:38854273-38962964:+ chr8:38865405:+ chr8:38996237,chr8:38996237,chr8:38996241 chr8:38997359,chr8:38997353,chr8:38997349 NA NA chr8:38853756,chr8:38853756,chr8:38853760 chr8:38854878,chr8:38854872,chr8:38854868 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Pep_M12B_propep-PARTIAL|~98-121|3.6e-24^Reprolysin_5|211-383|9.6e-23^Reprolysin|212-406|1.7e-73^Reprolysin_3|238-358|2.9e-18^Reprolysin_4|281-380|1.7e-13^Reprolysin_2|294-388|1.3e-12^Peptidase_M66|333-363|2.2e-05^Peptidase_M57|335-369|3.4e-06^Peptidase_M43|335-385|2.6e-05^Peptidase_M10|341-359|3.8e-05^Disintegrin|360-378|1.1^Disintegrin|424-434|0.019^EGF_2|427-430|5.5^Disintegrin|465-527|4.3e-20^Peptidase_M43|504-552|1.7^ADAM_CR|532-646|1.2e-39^Disintegrin|537-557|4.2^ADAMTS_CR_2|552-569|0.0083^ADAMTS_CR_2|587-611|0.005^Disintegrin|591-606|8.5^ADAMTS_CR_2|648-666|2.9e-05^Disintegrin|650-695|5.4^EGF_2|678-704|4e-06 ["ADAM9:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.00Mb];LOCAL_INVERSION:-:+:[45] 56 0 56 0 ONLY_REF_SPLICE YES_LDAS 0.6946 GT 1.8062 AG 1.9329 ENST00000456397.7 1-21 ENST00000677004.1 98-2553 chr8|-|[2]38996419-38996439[0]<==>chr8|+|[1]39007886-39007983[2]|[0]39011658-39011716[1]|[2]39013965-39014043[2]|[0]39016118-39016194[1]|[2]39017219-39017414[2]|[0]39018853-39018918[2]|[0]39021643-39021714[2]|[0]39023156-39023325[1]|[2]39025803-39025884[2]|[0]39026677-39026810[1]|[2]39041946-39042117[2]|[0]39046954-39047046[2]|[0]39054481-39054573[2]|[0]39055577-39055772[0]|[1]39071298-39071403[1]|[2]39077228-39077411[2]|[0]39082641-39082721[2]|[0]39082968-39083073[0]|[1]39090047-39090188[1]|[2]39091259-39091346[2]|[0]39101863-39101930[1]|[2]39103607-39103700[2] atggtgctaggtggttgcccgGCTTTCAACAGACCTCACATCTTTCTTCTTATGAAATTATAACTCCTTGGAGATTAACTAGAGAAAGAAGAGAAGCCCCTAGGCCCTATTCAAAACAAGTATCTTATGTTATTCAGGCTGAAGGAAAAGAGCATATTATTCACTTGGAAAGGAACAAAGACCTTTTGCCTGAAGATTTTGTGGTTTATACTTACAACAAGGAAGGGACTTTAATCACTGACCATCCCAATATACAGAATCATTGTCATTATCGGGGCTATGTGGAGGGAGTTCATAATTCATCCATTGCTCTTAGCGACTGTTTTGGACTCAGAGGATTGCTGCATTTAGAGAATGCGAGTTATGGGATTGAACCCCTGCAGAACAGCTCTCATTTTGAGCACATCATTTATCGAATGGATGATGTCTACAAAGAGCCTCTGAAATGTGGAGTTTCCAACAAGGATATAGAGAAAGAAACTGCAAAGGATGAAGAGGAAGAGCCTCCCAGCATGACTCAGCTACTTCGAAGAAGAAGAGCTGTCTTGCCACAGACCCGGTATGTGGAGCTGTTCATTGTCGTAGACAAGGAAAGGTATGACATGATGGGAAGAAATCAGACTGCTGTGAGAGAAGAGATGATTCTCCTGGCAAACTACTTGGATAGTATGTATATTATGTTAAATATTCGAATTGTGCTAGTTGGACTGGAGATTTGGACCAATGGAAACCTGATCAACATAGTTGGGGGTGCTGGTGATGTGCTGGGGAACTTCGTGCAGTGGCGGGAAAAGTTTCTTATCACACGTCGGAGACATGACAGTGCACAGCTAGTTCTAAAGAAAGGTTTTGGTGGAACTGCAGGAATGGCATTTGTGGGAACAGTGTGTTCAAGGAGCCACGCAGGCGGGATTAATGTGTTTGGACAAATCACTGTGGAGACATTTGCTTCCATTGTTGCTCATGAATTGGGTCATAATCTTGGAATGAATCACGATGATGGGAGAGATTGTTCCTGTGGAGCAAAGAGCTGCATCATGAATTCAGGAGCATCGGGTTCCAGAAACTTTAGCAGTTGCAGTGCAGAGGACTTTGAGAAGTTAACTTTAAATAAAGGAGGAAACTGCCTTCTTAATATTCCAAAGCCTGATGAAGCCTATAGTGCTCCCTCCTGTGGTAATAAGTTGGTGGACGCTGGGGAAGAGTGTGACTGTGGTACTCCAAAGAGAAGGGGTTTTGCTACATTGCCTAGACTGGTCTCGAACTCCTGGACTCAAGCAGTCTGCCTGCGTAAGACGCCCAGAGTGCTGGGATTACAGGAATGTGAATTGGACCCTTGCTGCGAAGGAAGTACCTGTAAGCTTAAATCATTTGCTGAGTGTGCATATGGTGACTGTTGTAAAGACTGTCGGTTCCTTCCAGGAGGTACTTTATGCCGAGGAAAAACCAGTGAGTGTGATGTTCCAGAGTACTGCAATGGTTCTTCTCAGTTCTGTCAGCCAGATGTTTTTATTCAGAATGGATATCCTTGCCAGAATAACAAAGCCTATTGCTACAACGGCATGTGCCAGTATTATGATGCTCAATGTCAAGTCATCTTTGGCTCAAAAGCCAAGGCTGCCCCCAAAGATTGTTTCATTGAAGTGAATTCTAAAGGTGACAGATTTGGCAATTGTGGTTTCTCTGGCAATGAATACAAGAAGTGTGCCACTGGGAATGCTTTGTGTGGAAAGCTTCAGTGTGAGAATGTACAAGAGATACCTGTATTTGGAATTGTGCCTGCTATTATTCAAACGCCTAGTCGAGGCACCAAATGTTGGGGTGTGGATTTCCAGCTAGGATCAGATGTTCCAGATCCTGGGATGGTTAACGAAGGCACAAAATGTGGTGCTGGAAAGATCTGTAGAAACTTCCAGTGTGTAGATGCTTCTGTTCTGAATTATGACTGTGATGTTCAGAAAAAGTGTCATGGACATGGGGTATGTAATAGCAATAAGAATTGTCACTGTGAAAATGGCTGGGCTCCCCCAAATTGTGAGACTAAAGGATACGGAGGAAGTGTGGACAGTGGACCTACATACAATGAAATGAATACTGCATTGAGGGACGGACTTCTGGTCTTCTTCTTCCTAATTGTTCCCCTTATTGTCTGTGCTATTTTTATCTTCATCAAGAGGGATCAACTGTGGAGAAGCTACTTCAGAAAGAAGAGATCACAAACATATGAGTCAGATGGCAAAAATCAAGCAAACCCTTCTAGACAGCCGGGGAGTGTTCCTCGACATGTTTCTCCAGTGACACCTCCCAGAGAAGTTCCTATATATGCAAACAGATTTGCAGTACCAACCTATGCAGCCAAGCAACCTCAGCAGTTCCCATCAAGGCCACCTCCACCACAACCGAAAGTATCATCTCAGGGAAACTTAATTCCTGCCCGTCCTGCTCCTGCACCTCCTTTATATAGTTCCCTCACTTGA MVLGGCPAFNRPHIFLLMKL*LLGD*LEKEEKPLGPIQNKYLMLFRLKEKSILFTWKGTKTFCLKILWFILTTRKGL*SLTIPIYRIIVIIGAMWREFIIHPLLLATVLDSEDCCI*RMRVMGLNPCRTALILSTSFIEWMMSTKSL*NVEFPTRI*RKKLQRMKRKSLPA*LSYFEEEELSCHRPGMWSCSLS*TRKGMT*WEEIRLL*EKR*FSWQTTWIVCILC*IFELC*LDWRFGPMET*ST*LGVLVMCWGTSCSGGKSFLSHVGDMTVHS*F*RKVLVELQEWHLWEQCVQGATQAGLMCLDKSLWRHLLPLLLMNWVIILE*ITMMGEIVPVEQRAAS*IQEHRVPETLAVAVQRTLRS*L*IKEETAFLIFQSLMKPIVLPPVVISWWTLGKSVTVVLQREGVLLHCLDWSRTPGLKQSACVRRPECWDYRNVNWTLAAKEVPVSLNHLLSVHMVTVVKTVGSFQEVLYAEEKPVSVMFQSTAMVLLSSVSQMFLFRMDILARITKPIATTACASIMMLNVKSSLAQKPRLPPKIVSLK*ILKVTDLAIVVSLAMNTRSVPLGMLCVESFSVRMYKRYLYLELCLLLFKRLVEAPNVGVWISS*DQMFQILGWLTKAQNVVLERSVETSSV*MLLF*IMTVMFRKSVMDMGYVIAIRIVTVKMAGLPQIVRLKDTEEVWTVDLHTMK*ILH*GTDFWSSSS*LFPLLSVLFLSSSRGINCGEATSERRDHKHMSQMAKIKQTLLDSRGVFLDMFLQ*HLPEKFLYMQTDLQYQPMQPSNLSSSHQGHLHHNRKYHLRET*FLPVLLLHLLYIVPSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 38853732 FALSE 38865405 TRUE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31493 CDK14::LINC02932 ENSG00000058091.17::ENSG00000243144.7 OV90 SRR8615874 SRR8670745 OVARY carcinoma (mixed_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDK14 ENSG00000058091.17 protein_coding + + chr7:90466424-91210590:+ chr7:91079480:+ chr7:90095738-90839905:+ chr7:90708795:+ LINC02932 ENSG00000243144.7 lncRNA + + chr7:91311368-91515427:+ chr7:91466845:+ chr7:90940683-91144742:+ chr7:91096160:+ chr7:91099545,chr7:91099542 chr7:91463222,chr7:91463216 NA NA chr7:90728860,chr7:90728857 chr7:91092537,chr7:91092531 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 10 11 7.93 ONLY_REF_SPLICE YES_LDAS 0.2348 GT 1.7232 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 14 CMGC CDK PFTAIRE O94921 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31507 DMXL1::TNFAIP8 ENSG00000172869.15::ENSG00000145779.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE FALSE TRUE 1548 FALSE NA FALSE NA DMXL1 ENSG00000172869.15 protein_coding + + chr5:119037772-119249138:+ chr5:119171969:+ chr5:118373467-118584833:+ chr5:118507664:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|116-129|0.11^ANAPC4_WD40|158-190|0.0014^WD40|170-196|1.9e-05^WD40|227-267|0.00033^WD40|633-657|0.79^WD40|987-1000|0.038^Rav1p_C|1114-1393|2.5e-11^Rav1p_C|1451-1876|4.4e-75^ThsA_Macro|2596-2684|4.5e-05^WD40|2767-2792|0.0073^ANAPC4_WD40|2798-2837|0.036^WD40|2807-2823|2.4^WD40|2850-2890|0.00029^WD40|2899-2935|0.00039^MIOS_WD40|2911-2982|3.3e-05^ANAPC4_WD40|2916-2991|0.0015^WD40|2942-2977|9.2e-09^WD40|3013-3025|0.098 DUF758-PARTIAL|~32-196|4.4e-86^DUF2857-PARTIAL|~32-77|0.053^CAP12-PCTIR_TIR-PARTIAL|~32-42|1.2^LYRM2-like|39-96|2.1e-05^ArAE_1_C|42-110|7.2e-05^TetR-C_39|51-109|0.00026^Pico_P2B|63-97|2.5e-05^CAP12-PCTIR_TIR|66-126|0.00014^DUF6331|77-107|0.24^DUF2857|91-149|3.4e-05^DUF6331|92-141|0.0009^LYRM2-like|124-142|0.5^DUF6331|129-171|0.0043^TetR-C_39|137-146|6 ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.02Mb];NEIGHBORS[19554] 29 14 29 13.42 ONLY_REF_SPLICE YES_LDAS 0.5335 GT 1.5546 AG 1.9899 ENST00000539542.6 1-6681 ENST00000503646.1 32-597 chr5|+|[0]119071570-119071656[2]|[0]119097979-119098104[2]|[0]119101935-119102006[2]|[0]119105180-119105258[0]|[1]119110151-119110283[1]|[2]119114475-119114541[2]|[0]119116158-119116336[1]|[2]119118815-119119004[2]|[0]119120971-119121139[0]|[1]119129211-119129423[0]|[1]119133132-119133385[2]|[0]119133494-119134178[0]|[1]119134268-119134389[2]|[0]119143841-119143930[2]|[0]119144536-119144638[0]|[1]119146837-119146956[0]|[1]119147249-119147470[0]|[1]119148739-119150421[0]|[1]119151929-119152036[0]|[1]119164507-119164676[2]|[0]119165183-119165280[1]|[2]119166616-119166781[2]|[0]119167603-119167864[0]|[1]119170190-119171280[2]|[0]119171778-119171969[2]<==>chr5|+|[1]119392816-119393381[2] atgaacctgcaccaggtgctgaccggggctgtgaaccctggcgaccactgcttctccgtgggcagcattggcgaccagcgcttcacggcttatgcatctggatgtgacattgtaatactgggaagcgattttgaaagattacagataatcccaggagctaaacatggaaatattcaagtgggatgtgtagactgttcaatgcaacaaggcaagattgcagcgtcttatggaaatgttatctccatttttgaaccagttaacctaccaaaacaaaagaaaaatttggaattatatagtcagtggcagaaaagtggccaattttttctggaatcaatagcacacaatataacctgggatcccacaggcagtcgtcttttaactggttccagctatttgcaactctggtccaatactaacttggagaagccaactgaagatgaaaatttaaataaaacagatcttaactttggagattggaaatgcatttggcattgcaaaactgcttcccaagttcatttaatgaaattttcaccagatggagaattttttgccactgctgggaaggatgactgtcttttgaaggtttggtataatgtagaaaactggcggacagctgttacttctccagatggaagttcagaaaaacaatcccaaggagaaattgacttttcttttgtgtatctggcccatcctcgagcagtaaatggattttcctggcgtaaaacaagcaaatatatgcctagggcttctgtatgtaatgtactgttgacttgctgcaaagataatgtgtgtcgtctttgggtagagacatttttaccaaatgattgtttgctatacggaggtgactgcagccattggactgaatcaattaatttaacaaataacttcaagagaaatgcttccagtaaagaacgagttcaaaatgctttagaagtaaatctgagacattttcgtagaggtcggaggagatcacttgctcttgtagcacatacgggatatctaccacatcagcaggatcctcatcatgttcacaggaacactccactgcatgccaatgcactttgccactttcatattgcagccagcatcaacccagccacagacattccacttcttccatctattacatctctgagtctaaatgaaaatgaagagaagaccggaccttttgttgtacactggctaaacaataaagaactgcattttactttgtccatggaagtttttttacagcaacttagaaaaagttttgaacaaccatcttctgaggccagtgtagaagattctaatcaggcagatgtaaaatctgatgaagaaactgatgatggtgttgatgatctgaaaataaatcccgaaaagaaggaattaggctgtgataaaatggtaccaaactcaagttttacatcattatcgtcagctgccattgatcatcagattgaagtacttctgtctgaatggagtaaaaatgcagatatgctatttagtattcatcccatggatggttctttgctagtttggcatgtggattggctggatgaataccagcctggtatgtttcgtcaagtacaggtgtcctttgtttccagaattccagtagctttccccacaggtgatgcaaactctctctgtaaaagcataatgatgtatgcctgtaccaagaatgttgacttggctattcagcaggggaaacaaaaaccttctggcctcacccgttccacatcaatgcttatttcttctggtcacaataaatcatctaatagtttaaaattaagtatttttacgcctaatgttatgatgatatcaaaacatgctgatggttctctgaatcagtggctggtcagttttgccgaggaatctgctttttctactgttctcagtatttcccacaaatccagatattgtggtcatcgttttcatcttaatgatttagcttgccactcagtattaccattattgctgacaacatcacaccataatgcattaaggacaccagatgttgataacccagagcaaccttttgatgctctaaatattgaagaatgctctttgacacaacaaaataaaagcactgttgacgtggcatttcaggatcccagtgcagtttacagtgagcttattctgtggagggttgacccagttgggccattgtctttttctggaggagtttctgagcttgcccggattaattctcttcatgtttctgccttttccaatgtggcatggctgcccactcttatacccagttattgtctgggtgcatactgcaactctcctagtgcatgctttgtagccagtgatggacaatatctgagattatatgaagcagttattgatgctaagaaacttttatctgagctttctaaccctgaaatttctaaatatgttggtgaagtctttaacatcgtcagtcaacaatcaacagccaggccaggatgcattattgcattagatcccattaccaaacttcatggcagaaaaacccaactgcttcatgtttttgaagaagacttcattttgaataaccttgagaagaaaagccttggcaaagacagcattttatctaatgcaggcagctcacctaatggattttctgagaagttctacctaattgtaatagaatgcactcaagacaaccgttcactgttacacatgtggaatttacatctaaagtcaattcctgtctcattagatgaaaaagtagatacaaaattatccgaagcggtttggcagccagaagaacattattcttcttctccagagaagatcctatctcctttttcacaaaagtatcaggcttgcagagcaaatctccagagtaccagcaggttgactctgttttcagaaatggtttatagccaagaattgcatttaccagaaggagttgagataataagtattaagccatcagcaggacatctgagttcatcttctatatatcctgcatgcagtgctccttatttattggcaacttcatgttcagatgagaaagtaagattctggagatgcagagtaacagatggagaatctgccacgtcaaagaatggaaaaattgatcttgcatacatttgggaagaatggccattacttattgaagatggacttcagagcaatagtagtataactgtacctggtaggcctgtagaagttagctgtgcacatacaaatcgtttagcagtagcttataagcagcctgcatctaatagtagatcttcccaggactttgtgatgcatgtaagtatttttgaatgtgagtcaacaggaggttcatgttgggtccttgagcagacaattcatttagatgagttaagcacagtattggattctggcattagtgttgatagcaatttagtggcctataataaacaagacatgtatttatctagtaaagagaatatcacatcaaacacaaagcatttagttcacttagattggatgtctagagaagacggttctcatatcctgactgtaggaattggatcaaaactttttatgtatggacccctggctggcaaggtacaagaccaaactggtaaggaaaccctggcatttcctctctgggagagtaccaaagttgtgcccctttctaaatttgtactattacgaagtgtggacctagtttcttctgtagatggctccccaccttttcctgtttctttatcgtgggtccgggatggcatccttgtggtaggaatggactgtgaaatgcatgtgtattgccaatggcaaccatcttctaaacaagaacctgttataacagattcgtacagtgggagcactccatctataacaagtttaataaaacagagtaactccagttctgggttacatcctccaaagaaaactctgactcgatccatgaccagtcttgcacagaaaatctgtggaaagaaaactgcattcgatccttcagtggatatggaagattcaggtctttttgaagcagctcatgtactttccccgactctacctcagtatcatcccttgcagcttttggaactcatggatcttggtaaagttcggagagccaaggccatcttgtcccatcttgttaagtgcattgctggggaagttgtggctctgaatgaagctgaatctaatcatgaacgccgccttaggtctctcacaatcagtgctagtggaagcactaccagagacccccaggcattcaacaaggctgaaaatacagattacacagaaatagattctgttcctccacttcctttatatgccttacttgcagcagatgatgatagctgttactcatctttggagaaatctagtaatgagagtacgttaagtaaatcaaaccaattatctaaagaaagttatgatgagctttttcagactcaacttctaatgactgatactcatatgttagagacagatgaagaaaatacaaagcctagagttattgacctttcacagtacagtccgacttactttggacctgagcatgctcaggttctttctggccacttacttcattctagtttaccaggactcagccggatggagcagatgtctttgatggccttagcagatacaattgcaactacaagcactgatattggagaaagccgagacagaagccaaggtggagaaactcttgatgaatgtgggttaaaatttcttttggctgttcgactccatacctttcttacaacttcccttccagcctatcgagctcaactccttcaccaaggcctgtctacaagtcattttgcttgggcatttcactcagtagcagaagaagaactgctgaacatgttgccagccatgcagaaagatgatcccacttggtctgaactaagagctatgggtgtggggtggtgggtccggaatacccgcatcttacgcaaatgcatagaaaaagtagctaaagcagccttttatagaaagaatgatcctttagatgctgccattttttaccttgcaatgaaaaagaaagctgtgatttggggattatatagagctgaaaaaaacaccaggatgacacagttttttggacacaattttgaggatgagaggtggcgtaaagcagctttaaagaatgctttttctttgctaggcaaacaaagatttgaacattctgcagcattttttcttttagctggttgcctcagagatgcaattgaggtatgtcttgagaaattgaatgacattcagttggctcttgtaatagcaagactctatgagtctgaatttgatacatctgcagcatataaatctattttacgtaaaaaagttttgggaatcgattctcctgtcagtgaactgtgttcattgaacataaatatgcatcatgatccttttcttcggagcatggcatattggattttggaagattatagtggtgctctggaaacattaataaagcaacctatcagagagaatgatgatcaagttttatcagccagtaatcctacagtttttaatttctacaattatctaagaacacatcctcttttgctgagacgtcattttggatcatctgatacattttccacacatatgagcctaacaggaaaaagtggactggcaggaacaattaatttaagtgaaagacgtttattttttaccactgccagtgctcatttaaaagctggctgcccaatgttggctttggaagtattatcaaagatgcctaaagtcatcaagaaaacaagacctttttatagggcttctagttttctggatactagtaaagactgttctccttcttctccattaaagttggatgcaagggaagataagtcttctgctgttgattggtcacagtcactgataaatggttttggatcttcttcagagggttcctcagagaagcaatcaaactccactctttcttttgactggagccaaccaagtgttgtgtttcaggatgactctttagagttaaaatgggacagtgataatgatgaagaaaatgaggatgtccctatttcaatgaaagaactaaaacctttacagagaaaaacagataaaaagttggatgacataagttctaactacacagaatctttcagcacactagatgaaaatgaccttttaaatccatcagaagatataattgcagttcagttaaaatttagagcatgtttaaagattctcacagtagaacttcgtactttatctactggctatgaaatagatggtggaaaattgcgttaccaactataccactggcttgaaaaagaggtgatagctcttcagaggacttgtgacttttgctcagatgctgaagaactacagtctgcatttggcagaaatgaagatgaatttggattaaatgaggatgctgaagatttgcctcaccaaacaaaagtgaaacaactgagagaaaattttcaggaaaaaagacagtggctcttgaagtatcagtcacttttgagaatgtttcttagttactgcatacttcatggatcccatggtgggggtcttgcatctgtaagaatggaattgattttgcttttgcaagaatctcagcaggaaacatcagaaccactattttctagccctctgtcagagcaaacctcagtgcctctcctctttgcttgtacagccaatgccaaaacagtagttgccaatccattattgcaccttagtaatctgacacatgatattctccatgccataataaactttgattcaccaccccaccctgatatccaaagcaataaaTGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAGATGAGCTAGCATTGATGGAGAAATTTAAGAAGAAAGTTCATCAGCTTGCTATGACCGTGGTCAGTTTCCATCAGGTGGATTATACCTTTGACCGGAATGTGTTATCCAGGCTGTTAAATGAATGCAGAGAGATGCTGCACCAAATCATTCAGCGCCACCTCACTGCCAAGTCACATGGACGGGTTAATAATGTGTTTGATCATTTTTCAGATTGTGAATTTTTGGCTGCCTTGTATAATCCTTTTGGGAATTTTAAACCCCACTTACAAAAACTATGTGATGGTATCAACAAAATGTTGGATGAAGAGAACATATGA MNLHQVLTGAVNPGDHCFSVGSIGDQRFTAYASGCDIVILGSDFERLQIIPGAKHGNIQVGCVDCSMQQGKIAASYGNVISIFEPVNLPKQKKNLELYSQWQKSGQFFLESIAHNITWDPTGSRLLTGSSYLQLWSNTNLEKPTEDENLNKTDLNFGDWKCIWHCKTASQVHLMKFSPDGEFFATAGKDDCLLKVWYNVENWRTAVTSPDGSSEKQSQGEIDFSFVYLAHPRAVNGFSWRKTSKYMPRASVCNVLLTCCKDNVCRLWVETFLPNDCLLYGGDCSHWTESINLTNNFKRNASSKERVQNALEVNLRHFRRGRRRSLALVAHTGYLPHQQDPHHVHRNTPLHANALCHFHIAASINPATDIPLLPSITSLSLNENEEKTGPFVVHWLNNKELHFTLSMEVFLQQLRKSFEQPSSEASVEDSNQADVKSDEETDDGVDDLKINPEKKELGCDKMVPNSSFTSLSSAAIDHQIEVLLSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLCKSIMMYACTKNVDLAIQQGKQKPSGLTRSTSMLISSGHNKSSNSLKLSIFTPNVMMISKHADGSLNQWLVSFAEESAFSTVLSISHKSRYCGHRFHLNDLACHSVLPLLLTTSHHNALRTPDVDNPEQPFDALNIEECSLTQQNKSTVDVAFQDPSAVYSELILWRVDPVGPLSFSGGVSELARINSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYEAVIDAKKLLSELSNPEISKYVGEVFNIVSQQSTARPGCIIALDPITKLHGRKTQLLHVFEEDFILNNLEKKSLGKDSILSNAGSSPNGFSEKFYLIVIECTQDNRSLLHMWNLHLKSIPVSLDEKVDTKLSEAVWQPEEHYSSSPEKILSPFSQKYQACRANLQSTSRLTLFSEMVYSQELHLPEGVEIISIKPSAGHLSSSSIYPACSAPYLLATSCSDEKVRFWRCRVTDGESATSKNGKIDLAYIWEEWPLLIEDGLQSNSSITVPGRPVEVSCAHTNRLAVAYKQPASNSRSSQDFVMHVSIFECESTGGSCWVLEQTIHLDELSTVLDSGISVDSNLVAYNKQDMYLSSKENITSNTKHLVHLDWMSREDGSHILTVGIGSKLFMYGPLAGKVQDQTGKETLAFPLWESTKVVPLSKFVLLRSVDLVSSVDGSPPFPVSLSWVRDGILVVGMDCEMHVYCQWQPSSKQEPVITDSYSGSTPSITSLIKQSNSSSGLHPPKKTLTRSMTSLAQKICGKKTAFDPSVDMEDSGLFEAAHVLSPTLPQYHPLQLLELMDLGKVRRAKAILSHLVKCIAGEVVALNEAESNHERRLRSLTISASGSTTRDPQAFNKAENTDYTEIDSVPPLPLYALLAADDDSCYSSLEKSSNESTLSKSNQLSKESYDELFQTQLLMTDTHMLETDEENTKPRVIDLSQYSPTYFGPEHAQVLSGHLLHSSLPGLSRMEQMSLMALADTIATTSTDIGESRDRSQGGETLDECGLKFLLAVRLHTFLTTSLPAYRAQLLHQGLSTSHFAWAFHSVAEEELLNMLPAMQKDDPTWSELRAMGVGWWVRNTRILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRAEKNTRMTQFFGHNFEDERWRKAALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYESEFDTSAAYKSILRKKVLGIDSPVSELCSLNINMHHDPFLRSMAYWILEDYSGALETLIKQPIRENDDQVLSASNPTVFNFYNYLRTHPLLLRRHFGSSDTFSTHMSLTGKSGLAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVIKKTRPFYRASSFLDTSKDCSPSSPLKLDAREDKSSAVDWSQSLINGFGSSSEGSSEKQSNSTLSFDWSQPSVVFQDDSLELKWDSDNDEENEDVPISMKELKPLQRKTDKKLDDISSNYTESFSTLDENDLLNPSEDIIAVQLKFRACLKILTVELRTLSTGYEIDGGKLRYQLYHWLEKEVIALQRTCDFCSDAEELQSAFGRNEDEFGLNEDAEDLPHQTKVKQLRENFQEKRQWLLKYQSLLRMFLSYCILHGSHGGGLASVRMELILLLQESQQETSEPLFSSPLSEQTSVPLLFACTANAKTVVANPLLHLSNLTHDILHAIINFDSPPHPDIQSNKWPQMSLIPKTWPFRHKRRSWVKWCPNPSPPP**TTQVVRCWMSSTE*PGSTPKTRRRQRRSSRTSSRQSSSWPFFIGIISLIKMS*H*WRNLRRKFISLL*PWSVSIRWIIPLTGMCYPGC*MNAERCCTKSFSATSLPSHMDGLIMCLIIFQIVNFWLPCIILLGILNPTYKNYVMVSTKCWMKRTY FALSE TRUE hsa-mir-5706 chr5:119154637-119154716:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31511 CCSER1::MMRN1 ENSG00000184305.16::ENSG00000138722.10 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1550 FALSE NA FALSE NA CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90313047:+ chr4:91048545-92526446:+ chr4:91234198:+ MMRN1 ENSG00000138722.10 protein_coding + + chr4:89879532-89954629:+ chr4:89951605:+ chr4:90800683-90875780:+ chr4:90872756:+ chr4:90350694,chr4:90350693 chr4:89939118,chr4:89939114 NA NA chr4:91271845,chr4:91271844 chr4:90860269,chr4:90860265 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.17Mb] 7 4 7 3.5 ONLY_REF_SPLICE YES_LDAS 0.132 GT 1.7465 AG 1.9329 ENST00000505073.5 1-1509 ENST00000394980.5 3119-3687 chr4|+|[0]90308285-90309608[0]|[1]90312863-90313047[2]<==>chr4|+|[1]89951605-89951751[0]|[1]89952997-89953418[2] atgggggactcaggatcaagacgatctaccctggtctcccggttgccaatattcagaagaagtattaacagaagacatgattctcttccttcttcaccttcttccagtaatacagttggtgtccacagttcctctccttccagcactaactcaagctcaggtagcacaggtaaacggaggagcatattccgtactccttccattagcttccaccataagaaggggagtgagcctaagcaagagcctaccaaccagaaccttagtatttcaaatggtgctcaacctggtcacagcaatatgcagaaactgagtttggaagaacatattaagaccaggggaagacattctgttggttttagtagttcacgaaataagaagataacaagatctttgacagaggattttgaaagggaaaaagagcactcaactaacaagaatgtctttataaattgtctaagttctggcaaaagtgaaggggatgattctggtttcacagaagaccaaactcgtcgttctgttaagcagtcaacaaggaagctactccctaaatctttttcatctcactataaattttctaagccagttctacagagccaatccatttcattggtacaacagtctgaattctcattggaagttacacagtaccaagagagagaacctgtattagtaagagcttcgccatcctgttctgtggatgtaacagaacgggcaggaagctctttacaatctcctttgctttctgctgatcttaccacagctcagacaccttcagaatttttagccttgactgaagattctgtgtctgaaatggatgcattttctaaaagtggaagcatggcatcccactgtgacaactttggccacaatgattctacctctcagatgtccctcaattctgctgctgttacaaagacaacaacagaacttacgggaactgttccctgtgcaattatgtctcctgggaaatataggttagagggtcaatgtagcactgaatctaattcattaccggaaacctctgctgctaatcagaaggaagtgttattacaaattgctgaactacctgctacaagtgtgagccactcagagagtaacctaccagcagatagtgaaagagaagaaaatatagggttacaaaatggtgaaacaatgctggggacaaactccccaaggaaacttggattttatgagcaacataaagcaatagcggaacatgtaaaagggatccatcctatttcagattcaaagataatacctacttctggtgatcatcatatttttaacaaaacatcacatggatatgaagcaaatcctgccaaagttcttgccagtagtctcagtccatttcgtgaaggaagatttatagagaggagactgcgatcctcgtcagaaggcactgcagggagtagcagaatgattttgaaaccgaaagatggaaatatagaagaagttaatagtttaagaaagcaaagagcaggttcttcatcttcaaaaatgaacagtttgAGGAGTATTCAAGCTGTAGTCGGCATCCGTGCCAAAATGGGGGCACGTGCATAAATGGAAGAACTAGCTTTACCTGTGCCTGCAGACATCCTTTTACTGGTGACAACTGCACTATCAAGCTTGTGGAAGAAAATGCTTTAGCTCCAGATTTTTCCAAAGGATCTTACAGATATGCACCCATGGTGGCATTTTTTGCATCTCATACGTATGGAATGACTATACCTGGTCCTATCCTGTTTAATAACTTGGATGTCAATTATGGAGCTTCATATACCCCAAGAACTGGAAAATTTAGAATTCCGTATCTTGGAGTATATGTTTTCAAGTACACCATCGAGTCATTTAGTGCTCATATTTCTGGATTTTTAGTGGTTGATGGAATAGACAAGCTTGCATTTGAGTCTGAAAATATTAACAGTGAAATACACTGTGATAGGGTTTTAACTGGGGATGCCTTATTAGAATTAAATTATGGGCAGGAAGTCTGGTTACGACTTGCAAAAGGAACAATTCCAGCCAAGTTTCCCCCTGTTACTACATTTAGTGGCTATTTATTATATCGTACATAA MGDSGSRRSTLVSRLPIFRRSINRRHDSLPSSPSSSNTVGVHSSSPSSTNSSSGSTGKRRSIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEEHIKTRGRHSVGFSSSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTEDQTRRSVKQSTRKLLPKSFSSHYKFSKPVLQSQSISLVQQSEFSLEVTQYQEREPVLVRASPSCSVDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAFSKSGSMASHCDNFGHNDSTSQMSLNSAAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAELPATSVSHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQHKAIAEHVKGIHPISDSKIIPTSGDHHIFNKTSHGYEANPAKVLASSLSPFREGRFIERRLRSSSEGTAGSSRMILKPKDGNIEEVNSLRKQRAGSSSSKMNSLRSIQAVVGIRAKMGARA*MEELALPVPADILLLVTTALSSLWKKML*LQIFPKDLTDMHPWWHFLHLIRME*LYLVLSCLITWMSIMELHIPQELENLEFRILEYMFSSTPSSHLVLIFLDF*WLME*TSLHLSLKILTVKYTVIGF*LGMPY*N*IMGRKSGYDLQKEQFQPSFPLLLHLVAIYYIVH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31513 CCSER1::ENSG00000251095 ENSG00000184305.16::ENSG00000251095.8 OPM2 SRR8615877 SRR8670743 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1551 FALSE NA FALSE NA CCSER1 ENSG00000184305.16 protein_coding + + chr4:90127394-91605295:+ chr4:90127831:+ chr4:91048545-92526446:+ chr4:91048982:+ ENSG00000251095 ENSG00000251095.8 lncRNA + + chr4:89410960-89726752:+ chr4:89719826:+ chr4:90332111-90647903:+ chr4:90640977:+ chr4:90236604,chr4:90236603 chr4:89656048,chr4:89656044 NA NA chr4:91157755,chr4:91157754 chr4:90577199,chr4:90577195 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 5 6 3.33 ONLY_REF_SPLICE YES_LDAS 0.1174 GT 1.8062 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31517 TGFA::ADD2 ENSG00000163235.16::ENSG00000075340.23 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1552 FALSE NA FALSE NA TGFA ENSG00000163235.16 protein_coding - - chr2:70447284-70554193:- chr2:70514859:- chr2:70674416-70781325:- chr2:70741991:- ADD2 ENSG00000075340.23 protein_coding - - chr2:70607618-70768225:- chr2:70706442:- chr2:70834750-70995357:- chr2:70933574:- chr2:70488675,chr2:70488680 chr2:70711842,chr2:70711844 NA NA chr2:70715807,chr2:70715812 chr2:70938974,chr2:70938976 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Lysis_col|15-28|3.2e-05^EGF|52-86|2.2e-06^EGF_2|52-87|1e-05^TMEM154-PARTIAL|100-112~|7.3e-05^Lysis_col-PARTIAL|111-112~|0.052 Mac|42-72|6.9e-06^Aldolase_II|152-333|1.4e-45 ["TGFA:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.05Mb];LOCAL_REARRANGEMENT:-:[53425] 241 77 241 77 ONLY_REF_SPLICE YES_LDAS 3.3473 GT 1.7819 AG 1.9086 ENST00000450929.5 1-112 ENST00000430656.5 15-1728 chr2|-|[0]70514859-70514912[1]|[0]70553184-70553241[0]<==>chr2|-|[2]70676709-70676885[0]|[2]70677758-70677877[0]|[2]70678704-70678961[0]|[2]70683591-70683767[0]|[2]70688024-70688122[0]|[2]70690786-70690929[0]|[2]70692403-70692552[0]|[2]70695721-70695801[0]|[2]70696245-70696396[1]|[0]70704321-70704459[0]|[2]70706226-70706442[2] atgttcaagatcggcagaggcgccctcgatctcttttcagagctcttgagctttgggggtattgtgttggctgcgtgccaggccttggagaacagcacgtccccgctgagtgAGTTCCAGGAGCGAATTGCAAACCCACCGGGAAAATGAGCGAAGAGACGGTCCCCGAGGCTGCCTCGCCGCCGCCCCCGCAGGGGCAGCCTTACTTTGACCGCTTCTCAGAGGACGACCCCGAGTACATGCGCCTTCGCAACCGGGCGGCGGACCTGCGGCAGGACTTCAACCTGATGGAGCAGAAGAAGCGCGTCACCATGATCCTGCAGAGTCCCTCTTTCAGGGAGGAGCTGGAAGGCCTCATCCAGGAGCAGATGAAGAAGGGGAACAACTCCTCCAACATCTGGGCCCTGCGACAGATCGCGGACTTCATGGCCAGCACCTCCCACGCAGTCTTCCCGACATCTTCCATGAATGTCTCCATGATGACGCCTATCAATGACCTCCACACAGCTGACTCCCTGAACCTGGCCAAAGGGGAGCGGCTCATGCGGTGCAAGATCAGCAGTGTCTACCGACTCCTGGACCTCTATGGCTGGGCCCAGCTGAGTGACACCTATGTCACGTTGAGAGTCAGCAAGGAGCAGGACCACTTCCTGATCAGCCCTAAGGGAGTTTCTTGCAGTGAAGTCACAGCGTCCAGCCTGATCAAGGTGAACATTCTGGGAGAGGTGGTGGAGAAGGGCAGCAGCTGCTTCCCAGTGGACACCACAGGCTTCTGTCTGCACTCGGCCATCTATGCAGCGAGGCCCGACGTGCGCTGCATCATCCACCTGCACACACCGGCCACAGCAGCGGTGTCGGCCATGAAGTGGGGCCTCCTGCCTGTCTCCCACAATGCCCTGCTGGTGGGGGACATGGCCTATTATGACTTCAATGGGGAAATGGAGCAGGAAGCCGATCGGATCAACCTGCAGAAGTGCCTTGGACCCACCTGCAAGATCCTGGTGCTAAGAAACCATGGAGTGGTTGCTCTGGGTGACACGGTAGAGGAGGCATTTTACAAGATCTTCCACCTGCAGGCTGCATGTGAGATACAGGTGTCGGCTCTGTCCAGTGCCGGGGGAGTGGAGAACCTCATCCTCCTGGAGCAGGAGAAGCACCGGCCCCATGAGGTGGGCTCCGTGCAGTGGGCCGGGAGCACCTTTGGGCCTATGCAGAAGAGTCGGCTGGGGGAGCATGAGTTTGAGGCCCTCATGAGGATGCTGGACAACCTGGGCTACAGAACAGGTTACACGTATCGCCACCCCTTTGTTCAAGAGAAAACCAAACACAAAAGTGAGGTGGAGATTCCAGCCACGGTCACAGCCTTCGTGTTTGAGGAGGACGGTGCCCCGGTGCCCGCCCTGCGACAGCATGCCCAGAAGCAGCAGAAGGAGAAGACCCGCTGGCTCAATACGCCCAACACCTACCTGCGGGTCAATGTGGCCGATGAGGTCCAGAGGAGCATGGGCAGCCCCCGACCCAAGACCACGTGGATGAAGGCTGACGAGGTGGAGAAATCCAGCAGTGGCATGCCGATTCGCATCGAAAACCCAAACCAATTTGTGCCTCTCTATACTGACCCCCAGGAAGTACTGGAGATGAGGAACAAGATTCGAGAACAAAACCGACAAGATGTGAAGTCAGCGGGGCCTCAGTCCCAGCTCCTGGCGAGCGTCATTGCCGAGAAGAGCCGAAGCCCGGTAGAGCAGAGGCTGCCCCTGACTGGCGGGGAAACGTGTTTGCCTTCGGGGTCTTCTGTGCCTGGGGCTGGGTTGCAGGACCCCTGA MFKIGRGALDLFSELLSFGGIVLAACQALENSTSPLSEFQERIANPPGK*AKRRSPRLPRRRPRRGSLTLTASQRTTPSTCAFATGRRTCGRTST*WSRRSASP*SCRVPLSGRSWKASSRSR*RRGTTPPTSGPCDRSRTSWPAPPTQSSRHLP*MSP**RLSMTSTQLTP*TWPKGSGSCGARSAVSTDSWTSMAGPS*VTPMSR*ESARSRTTS*SALREFLAVKSQRPA*SR*TFWERWWRRAAAASQWTPQASVCTRPSMQRGPTCAASSTCTHRPQQRCRP*SGASCLSPTMPCWWGTWPIMTSMGKWSRKPIGSTCRSALDPPARSWC*ETMEWLLWVTR*RRHFTRSSTCRLHVRYRCRLCPVPGEWRTSSSWSRRSTGPMRWAPCSGPGAPLGLCRRVGWGSMSLRPS*GCWTTWATEQVTRIATPLFKRKPNTKVRWRFQPRSQPSCLRRTVPRCPPCDSMPRSSRRRRPAGSIRPTPTCGSMWPMRSRGAWAAPDPRPRG*RLTRWRNPAVACRFASKTQTNLCLSILTPRKYWR*GTRFENKTDKM*SQRGLSPSSWRASLPRRAEAR*SRGCP*LAGKRVCLRGLLCLGLGCRTP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31518 MTAP::SLC24A2 ENSG00000099810.21::ENSG00000155886.12 OSRC2 SRR8615878 SRR8670740 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1553 FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ SLC24A2 ENSG00000155886.12 protein_coding - - chr9:19507452-19789037:- chr9:19622299:- chr9:19507450-19789035:- chr9:19622297:- chr9:21834125,chr9:21834127 chr9:19744217,chr9:19744219 NA NA chr9:21834124,chr9:21834126 chr9:19744215,chr9:19744217 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PNP_UDP_1|28-272|1.7e-53^DUF4938|79-144|2.3e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:2.02Mb] 41 12 41 12 ONLY_REF_SPLICE YES_LDAS 0.5579 GT 1.9656 AG 1.8892 ENST00000460874.6 1-398 ENST00000341998.7 931-1986 chr9|+|[0]21802867-21802950[2]|[0]21815433-21815519[2]|[0]21816714-21816772[1]|[2]21818035-21818202[1]<==>chr9|-|[2]19516153-19516402[2]|[1]19520894-19521060[0]|[2]19528049-19528138[0]|[2]19550137-19550268[0]|[2]19573351-19573469[1]|[0]19576924-19577022[1]|[0]19597229-19597279[1]|[0]19619584-19619692[0]|[2]19622261-19622299[0] atgcgcccggcccgtgcgtcccttgccgccgcggggagggactggggcgcggcactcgggactcacttgccgcgcgaggagaggattggaataattggtggaacaggcctggatgatccagaaattttagaaggaagaactgaaaaatatgtggatactccatttggcaagccatctgatgccttaattttggggaagataaaaaatgttgattgcgtcctccttgcaaggcatggaaggcagcacaccatcatgccttcaaaggtcaactaccaggcgaacatctgggctttgaaggaagagggctgtacacatgtcatagtgaccacagcttgtggctccttgagggaggagattcagcccggcgatattgtcattattgatcagttcattgacagCCATCTGCAGCCAGGGACAAGGATGAACCAACTCTACCGGCTAAGCCGCGTCTCCAGCGAGGTGGAAGCTCTGCCTCCCTCCACAACAGTCTCATGAGGAATAGCATCTTCCAACTCATGATACACACCCTTGACCCACTCGCCGAAGAACTTGGATCATATGGAAAACTAAAATATTATGACACAATGACTGAAGAAGGGAGGTTCAGAGAAAAGGCTTCAATTCTCCACAAGATCGCCAAGAAGAAATGTCATGTGGATGAGAACGAGAGGCAGAATGGGGCTGCCAACCACGTGGAAAAAATTGAGCTTCCAAACAGCACCAGCACAGATGTTGAAATGACACCATCCAGTGATGCTTCAGAACCTGTACAAAATGGAAATCTCTCCCACAACATTGAAGGTGCAGAAGCCCAGACCGCTGATGAGGAGGAGGACCAGCCTCTCAGCCTTGCCTGGCCTTCTGAAACCCGCAAGCAAGTCACGTTTCTGATTGTTTTCCCCATAGTGTTTCCTCTCTGGATTACGTTACCTGACGTTCGCAAACCTTCATCGAGGAAGTTTTTTCCCATCACGTTCTTTGGCTCCATTACCTGGATTGCAGTATTCTCTTACTTGATGGTCTGGTGGGCGCACCAGGTTGGAGAGACAATTGGCATCAGTGAAGAGATTATGGGCCTGACCATCTTGGCTGCTGGGACCTCCATCCCTGATCTTATCACCAGTGTCATAGTGGCCCGGAAGGGGTTAGGGGACATGGCTGTGTCCAGCTCTGTTGGAAGCAACATTTTTGACATCACTGTAGGGCTCCCACTGCCCTGGCTCCTGTACACCGTCATTCACAGATTCCAGCCAGTGGCTGTCAGCAGCAATGGCCTTTTCTGTGCCATCGTCCTTCTCTTCATCATGCTGCTCTTCGTCATCCTCTCTATCGCCCTCTGCAAGTGGCGAATGAACAAAATCCTGGGCTTCATCATGTTTGGCCTCTACTTTGTGTTCCTGGTGGTGAGCGTTCTCCTAGAAGACAGAATTCTTACATGCCCCGTCTCCATCTAG MRPARASLAAAGRDWGAALGTHLPREERIGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDSHLQPGTRMNQLYRLSRVSSEVEALPPSTTVS*GIASSNS*YTPLTHSPKNLDHMEN*NIMTQ*LKKGGSEKRLQFSTRSPRRNVMWMRTRGRMGLPTTWKKLSFQTAPAQMLK*HHPVMLQNLYKMEISPTTLKVQKPRPLMRRRTSLSALPGLLKPASKSRF*LFSP*CFLSGLRYLTFANLHRGSFFPSRSLAPLPGLQYSLT*WSGGRTRLERQLASVKRLWA*PSWLLGPPSLILSPVS*WPGRG*GTWLCPALLEATFLTSL*GSHCPGSCTPSFTDSSQWLSAAMAFSVPSSFSSSCCSSSSSLSPSASGE*TKSWASSCLASTLCSWW*AFS*KTEFLHAPSPS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31526 THSD4::NR2E3 ENSG00000187720.15::ENSG00000278570.5 OVK18 SRR8615880 SRR8670729 OVARY carcinoma (endometrioid_carcinoma) primary star-fusion TRUE TRUE TRUE 1555 FALSE NA FALSE NA THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71660734:+ chr15:71389291-72075722:+ chr15:71953073:+ NR2E3 ENSG00000278570.5 protein_coding + + chr15:71792638-71818259:+ chr15:71812336:+ chr15:72084977-72110600:+ chr15:72104676:+ chr15:71724262,chr15:71724263 chr15:71812161,chr15:71812159 NA NA chr15:72016601,chr15:72016602 chr15:72104501,chr15:72104499 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TSP1_spondin|57-79|7.6e-07^TSP_1|58-80|2.5e-07^TSP1_ADAMTS|60-81|7e-05^TSP1_CCN|61-73|0.005^TSP1_spondin|283-306|4.4^TSP_1|290-306|5.3^TSP1_CCN|296-306|4.8^TSP1_ADAMTS|312-321|0.6^ADAMTS_CR_3|324-411|6.4e-17^TSP1_spondin|344-381|7^TSP_1|352-383|6.7^ADAMTS_spacer1|414-527|8e-33^TSP1_ADAMTS|627-676|1.8e-10^TSP_1|627-650|6.2e-05^TSP1_CCN|627-637|0.0044^TSP1_spondin|627-676|0.0075^TSP1_ADAMTS|680-736|9.6e-18^TSP_1|683-706|7e-10^TSP1_CCN|683-701|1.2e-08^TSP1_spondin|683-736|4.8e-06^TSP1_CCN|736-761|1.5e-05^TSP1_spondin|737-793|0.00048^TSP1_ADAMTS|739-793|5.7e-16^TSP_1|743-793|3.8e-10^TSP1_ADAMTS|797-850|9.4e-14^TSP1_CCN|799-818|6.8e-05^TSP_1|800-827|0.00024^TSP1_spondin|800-850|0.00023^TSP1_ADAMTS|856-912|8.4e-19^TSP_1|859-884|1.2e-07^TSP1_CCN|859-875|9.5e-06^TSP1_spondin|859-885|0.00053^TSP1_ADAMTS|916-967|9e-14^TSP1_CCN|918-936|0.0021^TSP_1|919-967|6.2e-07^TSP1_spondin|919-967|2.7e-07^PLAC|975-1005|4.2e-14^TSP1_CCN|980-992|0.37 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.01Mb];NEIGHBORS[9255] 83 5 83 5 ONLY_REF_SPLICE YES_LDAS 0.7592 GT 1.9656 AG 1.8256 ENST00000355327.7 1-1357 ENST00000617575.5 572-1233 chr15|+|[0]71141528-71141556[1]|[2]71154863-71154932[2]|[0]71215035-71215399[1]|[2]71242649-71243096[2]|[0]71256613-71256715[0]|[1]71411687-71411823[2]|[0]71660530-71660734[0]<==>chr15|+|[1]71812336-71812511[2]|[0]71813389-71813635[0]|[1]71814012-71814117[1]|[2]71817552-71817684[2] atggtttcccatttcatggggtctctcagtgtcctgtgtttccttctgctgcttggattccagttcgtctgcccacagccctccactcaacacaggaaggtcccgcagcggatggcggcggagggcgcccccgaggacgacggcggcggcggcgccccgggagtgtggggcgcctggggcccctggtcggcctgctcgcgtagctgcagcggcggcgtgatggagcagacgcggccctgcctgccccgctcctaccgcctgcgcggcggccagcggcctggcgcccctgcgcgcgccttcgcggaccacgtggtgtcggcggtgcgcacgtcggtgccactgcaccggagccgcgacgagacgccagcgctggccggtacggacgccagccgccagggccccacggtgctgcgaggcagccggcacccacagccccagggcctcgaagtcactggggacagaaggagcaggacccgtggtaccattggccctggcaagtatggctatggtaaggccccatatatcttaccactgcagacagacactgcacacacgccacagaggctccggagacagaagctctcatcccgccattccaggtcccagggagcatcttctgctaggcatggctacagttcaccagcccaccaggtcccccaacatgggcctttgtaccaaagtgacagtggccctcgctctggactgcaggctgcggaggcccccatctaccagctacctttgacccatgatcaaggctaccctgcagcttcaagtctctttcacagcccagaaacaagcaacaaccacggtgtggggacccatggggcaactcagagcttctctcagcctgcccgatctacagcaatctcatgcatcggggcctatcggcagtacaagctgtgcaacaccaacgtatgtccagaaagcagtagaagtatccgggaggtacagtgtgcatcctacaacaacaagccattcatgggccggttttatgagtgggaaccatttgcagaagtaaaaggcaatcgcaaatgtgagttgaactgccaggcaatgggctaccgcttctatgtacggcaagctgagaaagtcatcgatggcaccccctgtgaccagaacggcacggccatctgtgtgtctgggcagtgcaagagcattggctgtgatgactacttaggctccgacaaagtcgtggacaaatgtggggtgtgtggaggagacaacacgggctgtcaggttgtgtcgggcgtgtttaagcatgccctcaccagcctgggctaccaccgcgtcgtggagattcccgagggagccacgaaaatcaacatcacggagatgtacaagagcaacaactatttggCTGATGAGAATATTGATGTCACCAGCAATGACCCTGAGTTCCCCTCCTCTCCATACTCCTCTTCCTCCCCCTGCGGCCTGGACAGCATCCATGAGACCTCGGCTCGCCTACTCTTCATGGCCGTCAAGTGGGCCAAGAACCTGCCTGTGTTCTCCAGCCTGCCCTTCCGGGATCAGGTGATCCTGCTGGAAGAGGCGTGGAGTGAACTCTTTCTCCTCGGGGCCATCCAGTGGTCTCTGCCTCTGGACAGCTGTCCTCTGCTGGCACCGCCCGAGGCCTCTGCTGCCGGTGGTGCCCAGGGCCGGCTCACGCTGGCCAGCATGGAGACGCGTGTCCTGCAGGAAACTATCTCTCGGTTCCGGGCATTGGCGGTGGACCCCACGGAGTTTGCCTGCATGAAGGCCTTGGTCCTCTTCAAGCCAGAGACGCGGGGCCTGAAGGATCCTGAGCACGTAGAGGCCTTGCAGGACCAGTCCCAAGTGATGCTGAGCCAGCACAGCAAGGCCCACCACCCCAGCCAGCCCGTGAGGTTTGGGAAATTGCTCCTGCTCCTCCCGTCTTTGAGGTTTATCACTGCGGAACGCATCGAGCTCCTCTTTTTCCGCAAGACCATAGGGAATACTCCAATGGAGAAGCTCCTTTGTGATATGTTCAAAAACTAG MVSHFMGSLSVLCFLLLLGFQFVCPQPSTQHRKVPQRMAAEGAPEDDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFADHVVSAVRTSVPLHRSRDETPALAGTDASRQGPTVLRGSRHPQPQGLEVTGDRRSRTRGTIGPGKYGYGKAPYILPLQTDTAHTPQRLRRQKLSSRHSRSQGASSARHGYSSPAHQVPQHGPLYQSDSGPRSGLQAAEAPIYQLPLTHDQGYPAASSLFHSPETSNNHGVGTHGATQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPEGATKINITEMYKSNNYLADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31539 RBMS1::MIR3681HG ENSG00000153250.21::ENSG00000224184.7 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RBMS1 ENSG00000153250.21 protein_coding - - chr2:160272151-160493807:- chr2:160493289:- chr2:161128662-161350318:- chr2:161349800:- MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12558206:+ chr2:11974052-12843039:+ chr2:12698332:+ chr2:160490517,chr2:160490520,chr2:160490522 chr2:12370738,chr2:12370735,chr2:12370735 NA NA chr2:161347028,chr2:161347031,chr2:161347033 chr2:12510864,chr2:12510861,chr2:12510861 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 17 5 17 5 ONLY_REF_SPLICE YES_LDAS 0.2237 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31540 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1558 TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7390073:+ chr6:7390026-7418270:+ chr6:7390306:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387175:- chr6:7326889-7389975:- chr6:7387408:- chr6:7390507,chr6:7390507,chr6:7390507,chr6:7390676,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7390507,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7392602,chr6:7392430,chr6:7392453,chr6:7392449,chr6:7392455,chr6:7392470,chr6:7390666,chr6:7395437,chr6:7397188 chr6:7388236,chr6:7388245,chr6:7388252,chr6:7389584,chr6:7387776,chr6:7387778,chr6:7387779,chr6:7387774,chr6:7387802,chr6:7387791,chr6:7387801,chr6:7388203,chr6:7388198,chr6:7387816,chr6:7387775,chr6:7387831,chr6:7387784,chr6:7387838,chr6:7387840,chr6:7388234,chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389978,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7389586,chr6:7389667,chr6:7389667 chr6:7389977,chr6:7389977,chr6:7389977,chr6:7389938,chr6:7389938 chr6:7389545,chr6:7389551,chr6:7389554,chr6:7389588,chr6:7389538 chr6:7390740,chr6:7390740,chr6:7390740,chr6:7390909,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7390740,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7392835,chr6:7392663,chr6:7392686,chr6:7392682,chr6:7392688,chr6:7392703,chr6:7390899,chr6:7395670,chr6:7397421 chr6:7388469,chr6:7388478,chr6:7388485,chr6:7389817,chr6:7388009,chr6:7388011,chr6:7388012,chr6:7388007,chr6:7388035,chr6:7388024,chr6:7388034,chr6:7388436,chr6:7388431,chr6:7388049,chr6:7388008,chr6:7388064,chr6:7388017,chr6:7388071,chr6:7388073,chr6:7388467,chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7390211,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7389819,chr6:7389900,chr6:7389900 chr6:7390210,chr6:7390210,chr6:7390210,chr6:7390171,chr6:7390171 chr6:7389778,chr6:7389784,chr6:7389787,chr6:7389821,chr6:7389771 sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RNA_pol_3_Rpc31|15-71|2.1e-05 CAGE1|42-244|5.9e-93^CAGE1|241-529|3.1e-163^PDZ_4|315-375|4.2e-05^DUF484|321-414|1.9e-05^DUF1327|354-386|2.6e-05^DUF1327|394-468|0.27^DUF484|439-528|0.15 ["CAGE1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.00Mb];NEIGHBORS_OVERLAP:+:-:[247] 10 20 10 7.35 ONLY_REF_SPLICE YES_LDAS 0.1764 GT 1.9656 AG 1.8892 ENST00000475351.5 1-71 ENST00000512691.1 35-1674 chr6|+|[0]7390003-7390073[1]<==>chr6|-|[2]7373181-7374131[0]|[2]7378617-7379020[1]|[0]7385785-7385872[0]|[2]7386979-7387175[1] atggactaccggcggcttctcatgagccgggtggtccccgggcaattcgacgacgcggactcctctgacagTTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCTTTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAGAACGAAATAAAGAATTTTGAAAGGGAAAATGAGTATGAATCCACACTTTGTGAAGATGCTTATGGCACACTAGACAATTTGTTAAATGATAACAACATTGAAAATTACTCAACGAATGCACTAATTCAGCCAGTTGACACCATCAGCATATCTTCCTTGAGACAATTTGAAACCGTTTGCAAATTTCACTGGGTAGAAGCATTTGATGATGAAATGACAGAGAAGCCAGAATTTCAAAGTCAAGTGTATAATTATGCAAAAGACAACAATATAAAGCAAGACTCATTTAAGGAAGAAAATCCAATGGAAACTAGTGTTTCTGCAAATACAGACCAACTTGGTAACGAGTATTTTAGACAGCCTCCTCCTAGAAGCCCGCCTCTAATCCACTGCAGTGGAGAGATGCTGAAATTTACAGAAAAGTCACTGGCTAAAAGTATTGCCAAGGAATCTGCCCTCAACCCTAGCCAACCTCCAAGCTTCTTATGTAAGACTGCAGTTCCTTCAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGAAGTCACAGCAGAGGGTGTGGAGAGGCCAGAAATTGTCTCAACTTGGTCTTCGGCAGGCATTTCCTGGAGGAGTGAAGCATGTCGGGAGAACTGTGAGATGCCTGACTGGGAGCAAAGTGCTGAAAGCTTACAACCTGTTCAAGAGGACATGGCTTTAAATGAAGTCTTGCAGAAATTAAAACATACTAACAGAAAGCAGGAAGTGCGAATCCAAGAACTCCAGTGTAGTAACCTGTATTTAGAGAAGAGGGTTAAAGAACTACAGATGAAGATTACCAAACAGCAAGTGTTCATTGATGTCATCAATAAGCTAAAGGAGAATGTTGAAGAATTAATTGAAGACAAATACAAAATAATCCTAGAGAAGAATGATACTAAAAAGACATTGCAGAATTTGGAAGAGGTTTTAGCTAACACGCAAAAACATCTTCAGGAATCCAGGAATGACAAGGAAATGTTACAGCTTCAATTTAAGAAGATCAAGGCTAATTATGTGTGTTTACAGGAAAGGTACATGACTGAAATGCAACAAAAAAATAAATCTGTAAGTCAGTATTTAGAGATGGACAAAACCTTAAGCAAGAAAGAAGAAGAGGTAGAGAGACTACAACAACTCAAAAAAGAACTGGAAAAGGCCACAGCTTCTGCTTTGGACTTGTTGAAACGGGAAAAAGAGGCCCAAGAACAAGAGTTCTTGTCTTTACAGGAGGAATTCCAGAAACTTGAAAAGGAAAACCTGGAAGAAAGACAGAAACTGAAATCTAGACTTGAGAAATTGCTCACTCAAGTTAGAAATTTGCAATTTATGTCTGAAAATGAAAGAACGAAGAATATAAAACTTCAGCAGCAAATCAACGAAGTAAAAAATGAGAATGCAAAA MDYRRLLMSRVVPGQFDDADSSDSYEQGLSKILVITFRSCTF*SGYFS*KSRKHVRIGYHECQQSFSRCNAFTFSNLYGNHRHHL*LASERNKEF*KGK*V*IHTL*RCLWHTRQFVK**QH*KLLNECTNSAS*HHQHIFLETI*NRLQISLGRSI***NDREARISKSSV*LCKRQQYKARLI*GRKSNGN*CFCKYRPTW*RVF*TASS*KPASNPLQWRDAEIYRKVTG*KYCQGICPQP*PTSKLLM*DCSSFKRNTELWGDS*DVSQL*KGSHSRGCGEARNCLNLVFGRHFLEE*SMSGEL*DA*LGAKC*KLTTCSRGHGFK*SLAEIKTY*QKAGSANPRTPV**PVFREEG*RTTDEDYQTASVH*CHQ*AKGEC*RIN*RQIQNNPREE*Y*KDIAEFGRGFS*HAKTSSGIQE*QGNVTASI*EDQG*LCVFTGKVHD*NATKK*ICKSVFRDGQNLKQERRRGRETTTTQKRTGKGHSFCFGLVETGKRGPRTRVLVFTGGIPET*KGKPGRKTETEI*T*EIAHSS*KFAIYV*K*KNEEYKTSAANQRSKK*ECK FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31541 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 1559 TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7390073:+ chr6:7390026-7418270:+ chr6:7390306:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387196:- chr6:7326889-7389975:- chr6:7387429:- chr6:7390507,chr6:7390507,chr6:7390507,chr6:7390676,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7390507,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390490,chr6:7390507,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7395235,chr6:7395236,chr6:7395247,chr6:7395253,chr6:7395259,chr6:7395264,chr6:7395263,chr6:7392602,chr6:7392430,chr6:7392453,chr6:7392449,chr6:7392455,chr6:7392470,chr6:7390666,chr6:7395437,chr6:7397188 chr6:7388236,chr6:7388245,chr6:7388252,chr6:7389584,chr6:7387776,chr6:7387778,chr6:7387779,chr6:7387774,chr6:7387802,chr6:7387791,chr6:7387801,chr6:7388203,chr6:7388198,chr6:7387816,chr6:7387775,chr6:7387831,chr6:7387784,chr6:7387838,chr6:7387840,chr6:7388234,chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389751,chr6:7389978,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7390034,chr6:7389586,chr6:7389667,chr6:7389667 chr6:7389977,chr6:7389977,chr6:7389977,chr6:7389938,chr6:7389938 chr6:7389545,chr6:7389551,chr6:7389554,chr6:7389588,chr6:7389538 chr6:7390740,chr6:7390740,chr6:7390740,chr6:7390909,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7390740,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390723,chr6:7390740,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7395468,chr6:7395469,chr6:7395480,chr6:7395486,chr6:7395492,chr6:7395497,chr6:7395496,chr6:7392835,chr6:7392663,chr6:7392686,chr6:7392682,chr6:7392688,chr6:7392703,chr6:7390899,chr6:7395670,chr6:7397421 chr6:7388469,chr6:7388478,chr6:7388485,chr6:7389817,chr6:7388009,chr6:7388011,chr6:7388012,chr6:7388007,chr6:7388035,chr6:7388024,chr6:7388034,chr6:7388436,chr6:7388431,chr6:7388049,chr6:7388008,chr6:7388064,chr6:7388017,chr6:7388071,chr6:7388073,chr6:7388467,chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7389984,chr6:7390211,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7390267,chr6:7389819,chr6:7389900,chr6:7389900 chr6:7390210,chr6:7390210,chr6:7390210,chr6:7390171,chr6:7390171 chr6:7389778,chr6:7389784,chr6:7389787,chr6:7389821,chr6:7389771 sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RNA_pol_3_Rpc31|15-71|2.1e-05 CAGE1|42-244|5.9e-93^CAGE1|241-529|3.1e-163^PDZ_4|315-375|4.2e-05^DUF484|321-414|1.9e-05^DUF1327|354-386|2.6e-05^DUF1327|394-468|0.27^DUF484|439-528|0.15 ["CAGE1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.00Mb];NEIGHBORS_OVERLAP:+:-:[247] 8 21 8 6.92 ONLY_REF_SPLICE YES_LDAS 0.1517 GT 1.9656 AG 1.7232 ENST00000475351.5 1-71 ENST00000512691.1 14-1674 chr6|+|[0]7390003-7390073[1]<==>chr6|-|[2]7373181-7374131[0]|[2]7378617-7379020[1]|[0]7385785-7385872[0]|[2]7386979-7387196[1] atggactaccggcggcttctcatgagccgggtggtccccgggcaattcgacgacgcggactcctctgacagAAGTCTTCTATTGTTCAACAGTTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCTTTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAGAACGAAATAAAGAATTTTGAAAGGGAAAATGAGTATGAATCCACACTTTGTGAAGATGCTTATGGCACACTAGACAATTTGTTAAATGATAACAACATTGAAAATTACTCAACGAATGCACTAATTCAGCCAGTTGACACCATCAGCATATCTTCCTTGAGACAATTTGAAACCGTTTGCAAATTTCACTGGGTAGAAGCATTTGATGATGAAATGACAGAGAAGCCAGAATTTCAAAGTCAAGTGTATAATTATGCAAAAGACAACAATATAAAGCAAGACTCATTTAAGGAAGAAAATCCAATGGAAACTAGTGTTTCTGCAAATACAGACCAACTTGGTAACGAGTATTTTAGACAGCCTCCTCCTAGAAGCCCGCCTCTAATCCACTGCAGTGGAGAGATGCTGAAATTTACAGAAAAGTCACTGGCTAAAAGTATTGCCAAGGAATCTGCCCTCAACCCTAGCCAACCTCCAAGCTTCTTATGTAAGACTGCAGTTCCTTCAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGAAGTCACAGCAGAGGGTGTGGAGAGGCCAGAAATTGTCTCAACTTGGTCTTCGGCAGGCATTTCCTGGAGGAGTGAAGCATGTCGGGAGAACTGTGAGATGCCTGACTGGGAGCAAAGTGCTGAAAGCTTACAACCTGTTCAAGAGGACATGGCTTTAAATGAAGTCTTGCAGAAATTAAAACATACTAACAGAAAGCAGGAAGTGCGAATCCAAGAACTCCAGTGTAGTAACCTGTATTTAGAGAAGAGGGTTAAAGAACTACAGATGAAGATTACCAAACAGCAAGTGTTCATTGATGTCATCAATAAGCTAAAGGAGAATGTTGAAGAATTAATTGAAGACAAATACAAAATAATCCTAGAGAAGAATGATACTAAAAAGACATTGCAGAATTTGGAAGAGGTTTTAGCTAACACGCAAAAACATCTTCAGGAATCCAGGAATGACAAGGAAATGTTACAGCTTCAATTTAAGAAGATCAAGGCTAATTATGTGTGTTTACAGGAAAGGTACATGACTGAAATGCAACAAAAAAATAAATCTGTAAGTCAGTATTTAGAGATGGACAAAACCTTAAGCAAGAAAGAAGAAGAGGTAGAGAGACTACAACAACTCAAAAAAGAACTGGAAAAGGCCACAGCTTCTGCTTTGGACTTGTTGAAACGGGAAAAAGAGGCCCAAGAACAAGAGTTCTTGTCTTTACAGGAGGAATTCCAGAAACTTGAAAAGGAAAACCTGGAAGAAAGACAGAAACTGAAATCTAGACTTGAGAAATTGCTCACTCAAGTTAGAAATTTGCAATTTATGTCTGAAAATGAAAGAACGAAGAATATAAAACTTCAGCAGCAAATCAACGAAGTAAAAAATGAGAATGCAAAA MDYRRLLMSRVVPGQFDDADSSDRSLLLFNSYEQGLSKILVITFRSCTF*SGYFS*KSRKHVRIGYHECQQSFSRCNAFTFSNLYGNHRHHL*LASERNKEF*KGK*V*IHTL*RCLWHTRQFVK**QH*KLLNECTNSAS*HHQHIFLETI*NRLQISLGRSI***NDREARISKSSV*LCKRQQYKARLI*GRKSNGN*CFCKYRPTW*RVF*TASS*KPASNPLQWRDAEIYRKVTG*KYCQGICPQP*PTSKLLM*DCSSFKRNTELWGDS*DVSQL*KGSHSRGCGEARNCLNLVFGRHFLEE*SMSGEL*DA*LGAKC*KLTTCSRGHGFK*SLAEIKTY*QKAGSANPRTPV**PVFREEG*RTTDEDYQTASVH*CHQ*AKGEC*RIN*RQIQNNPREE*Y*KDIAEFGRGFS*HAKTSSGIQE*QGNVTASI*EDQG*LCVFTGKVHD*NATKK*ICKSVFRDGQNLKQERRRGRETTTTQKRTGKGHSFCFGLVETGKRGPRTRVLVFTGGIPET*KGKPGRKTETEI*T*EIAHSS*KFAIYV*K*KNEEYKTSAANQRSKK*ECK FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31544 RIOK1::CAGE1 ENSG00000124784.9::ENSG00000164304.16 HS944T SRR8615889 SRR8652117 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA TRUE 2825 TRUE 1074 RIOK1 ENSG00000124784.9 protein_coding + + chr6:7389793-7418037:+ chr6:7402715:+ chr6:7390026-7418270:+ chr6:7402948:+ CAGE1 ENSG00000164304.16 protein_coding - - chr6:7326656-7389742:- chr6:7387196:- chr6:7326889-7389975:- chr6:7387429:- chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889,chr6:7402889 chr6:7389211,chr6:7389214,chr6:7389243,chr6:7389242,chr6:7389246,chr6:7389250,chr6:7389255,chr6:7389218 NA NA chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122,chr6:7403122 chr6:7389444,chr6:7389447,chr6:7389476,chr6:7389475,chr6:7389479,chr6:7389483,chr6:7389488,chr6:7389451 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CIS_TMP|58-116|0.2^ABC1|192-218|0.017^RIO1|193-380|6.9e-80^APH|247-307|0.025^ABC1|249-336|4.9e-05^Csm1_B|299-346|8.6e-05^APH|307-341|0.00018^CIS_TMP|377-561|0.00052^Podoplanin|445-547|0.00014^RIO1|534-545|3.8 CAGE1|42-244|5.9e-93^CAGE1|241-529|3.1e-163^PDZ_4|315-375|4.2e-05^DUF484|321-414|1.9e-05^DUF1327|354-386|2.6e-05^DUF1327|394-468|0.27^DUF484|439-528|0.15 ["CAGE1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.00Mb];NEIGHBORS_OVERLAP:+:-:[247] 2 25 2 8.03 ONLY_REF_SPLICE YES_LDAS 0.102 GT 1.7819 AG 1.7232 ENST00000379834.7 1-686 ENST00000512691.1 14-1674 chr6|+|[0]7390003-7390073[1]|[2]7393099-7393303[2]|[0]7395053-7395143[0]|[1]7396703-7396772[1]|[2]7398698-7398740[2]|[0]7400958-7401050[2]|[0]7402603-7402715[1]<==>chr6|-|[2]7373181-7374131[0]|[2]7378617-7379020[1]|[0]7385785-7385872[0]|[2]7386979-7387196[1] atggactaccggcggcttctcatgagccgggtggtccccgggcaattcgacgacgcggactcctctgacagtgaaaacagagacttgaagacagtcaaagagaaggatgacattctgtttgaagaccttcaagacaatgtgaatgagaatggtgaaggtgaaatagaagatgaggaggaggagggttatgacgatgatgatgatgactgggactgggatgaaggagttggaaaactcgccaagggttatgtctggaatggaggaagcaacccacaggcaaatcgacagacctccgacagcagttcagccaaaatgtctactccagcagacaaggtcttacggaaatttgagaataaaattaatttagataagctaaatgttactgattccgtcataaataaagtcaccgaaaagtctagacaaaaggaagcagatatgtatcgcatcaaagataaggcagacagagcaactgtagaacaggtgttggatcccagaacaagaatgattttattcaagatgttgactagaggaatcataacagagataaatggctgcattagcacaggaaaagaagctaatgtataccatgctagcacagcaaatggagagagcagagcaatcaaaatttataaaacttctattttggtgttcaaagatcgggataaatatgtaagtggagaattcagAAGTCTTCTATTGTTCAACAGTTATGAACAAGGACTATCAAAAATTTTGGTCATCACCTTCAGATCCTGTACATTTTGAAGTGGATACTTCTCATGAAAAAGTAGAAAGCATGTCAGAATCGGATACCATGAATGTCAGCAATCTTTCTCAAGGTGTAATGCTTTCACATTCTCCAATCTGTATGGAAACCACCGGCACCACTTGTGACTTGCCTCAGAACGAAATAAAGAATTTTGAAAGGGAAAATGAGTATGAATCCACACTTTGTGAAGATGCTTATGGCACACTAGACAATTTGTTAAATGATAACAACATTGAAAATTACTCAACGAATGCACTAATTCAGCCAGTTGACACCATCAGCATATCTTCCTTGAGACAATTTGAAACCGTTTGCAAATTTCACTGGGTAGAAGCATTTGATGATGAAATGACAGAGAAGCCAGAATTTCAAAGTCAAGTGTATAATTATGCAAAAGACAACAATATAAAGCAAGACTCATTTAAGGAAGAAAATCCAATGGAAACTAGTGTTTCTGCAAATACAGACCAACTTGGTAACGAGTATTTTAGACAGCCTCCTCCTAGAAGCCCGCCTCTAATCCACTGCAGTGGAGAGATGCTGAAATTTACAGAAAAGTCACTGGCTAAAAGTATTGCCAAGGAATCTGCCCTCAACCCTAGCCAACCTCCAAGCTTCTTATGTAAGACTGCAGTTCCTTCAAAAGAAATACAGAATTATGGGGAGATTCCTGAGATGTCAGTCAGTTATGAAAAGGAAGTCACAGCAGAGGGTGTGGAGAGGCCAGAAATTGTCTCAACTTGGTCTTCGGCAGGCATTTCCTGGAGGAGTGAAGCATGTCGGGAGAACTGTGAGATGCCTGACTGGGAGCAAAGTGCTGAAAGCTTACAACCTGTTCAAGAGGACATGGCTTTAAATGAAGTCTTGCAGAAATTAAAACATACTAACAGAAAGCAGGAAGTGCGAATCCAAGAACTCCAGTGTAGTAACCTGTATTTAGAGAAGAGGGTTAAAGAACTACAGATGAAGATTACCAAACAGCAAGTGTTCATTGATGTCATCAATAAGCTAAAGGAGAATGTTGAAGAATTAATTGAAGACAAATACAAAATAATCCTAGAGAAGAATGATACTAAAAAGACATTGCAGAATTTGGAAGAGGTTTTAGCTAACACGCAAAAACATCTTCAGGAATCCAGGAATGACAAGGAAATGTTACAGCTTCAATTTAAGAAGATCAAGGCTAATTATGTGTGTTTACAGGAAAGGTACATGACTGAAATGCAACAAAAAAATAAATCTGTAAGTCAGTATTTAGAGATGGACAAAACCTTAAGCAAGAAAGAAGAAGAGGTAGAGAGACTACAACAACTCAAAAAAGAACTGGAAAAGGCCACAGCTTCTGCTTTGGACTTGTTGAAACGGGAAAAAGAGGCCCAAGAACAAGAGTTCTTGTCTTTACAGGAGGAATTCCAGAAACTTGAAAAGGAAAACCTGGAAGAAAGACAGAAACTGAAATCTAGACTTGAGAAATTGCTCACTCAAGTTAGAAATTTGCAATTTATGTCTGAAAATGAAAGAACGAAGAATATAAAACTTCAGCAGCAAATCAACGAAGTAAAAAATGAGAATGCAAAA MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFRSLLLFNSYEQGLSKILVITFRSCTF*SGYFS*KSRKHVRIGYHECQQSFSRCNAFTFSNLYGNHRHHL*LASERNKEF*KGK*V*IHTL*RCLWHTRQFVK**QH*KLLNECTNSAS*HHQHIFLETI*NRLQISLGRSI***NDREARISKSSV*LCKRQQYKARLI*GRKSNGN*CFCKYRPTW*RVF*TASS*KPASNPLQWRDAEIYRKVTG*KYCQGICPQP*PTSKLLM*DCSSFKRNTELWGDS*DVSQL*KGSHSRGCGEARNCLNLVFGRHFLEE*SMSGEL*DA*LGAKC*KLTTCSRGHGFK*SLAEIKTY*QKAGSANPRTPV**PVFREEG*RTTDEDYQTASVH*CHQ*AKGEC*RIN*RQIQNNPREE*Y*KDIAEFGRGFS*HAKTSSGIQE*QGNVTASI*EDQG*LCVFTGKVHD*NATKK*ICKSVFRDGQNLKQERRRGRETTTTQKRTGKGHSFCFGLVETGKRGPRTRVLVFTGGIPET*KGKPGRKTETEI*T*EIAHSS*KFAIYV*K*KNEEYKTSAANQRSKK*ECK FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase RIO1 Atypical RIO RIO1 Q9BRS2 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31545 DNMT1::KEAP1 ENSG00000130816.17::ENSG00000079999.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1560 FALSE NA FALSE NA DNMT1 ENSG00000130816.17 protein_coding - - chr19:10133342-10231286:- chr19:10162667:- chr19:10244018-10341962:- chr19:10273343:- KEAP1 ENSG00000079999.14 protein_coding - - chr19:10486125-10503558:- chr19:10486818:- chr19:10596801-10614234:- chr19:10597494:- chr19:10162546,chr19:10162617,chr19:10162548,chr19:10162548 chr19:10488920,chr19:10488764,chr19:10488919,chr19:10489067 NA NA chr19:10273222,chr19:10273293,chr19:10273224,chr19:10273224 chr19:10599596,chr19:10599440,chr19:10599595,chr19:10599743 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DMAP_binding|18-104|3.9e-26^HTH_12|24-42|0.00011^DNMT1-RFD|44-83|0.22^DMAP_binding|224-230|6^DNA_methylase|254-254|6^DMAP_binding|294-337|3^DNMT1-RFD|416-549|1.5e-51^zf-CXXC|662-707|2e-18^BAH|771-896|4.5e-32^BAH-PARTIAL|948-1008~|1e-33 none ["DNMT1:Oncogene"];["KEAP1:ArcherDX_panel","KEAP1:FoundationOne_panel","KEAP1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.28Mb] 306 79 306 79 ONLY_REF_SPLICE YES_LDAS 4.1619 GT 1.5628 AG 1.8892 ENST00000359526.9 1-1008 ENST00000171111.10 1709-1875 chr19|-|[2]10162667-10162748[2]|[1]10163326-10163360[0]|[2]10166598-10166685[2]|[1]10168330-10168364[0]|[2]10173090-10173174[2]|[1]10173871-10173905[0]|[2]10175540-10175618[2]|[1]10177292-10177367[1]|[0]10180187-10180234[1]|[0]10180350-10180569[0]|[2]10180778-10180885[0]|[2]10182041-10182077[2]|[1]10194820-10194899[0]<==>chr19|-|[2]10486652-10486818[1] atgccggcgcgtaccgccccagcccgggtgcccacactggccgtcccggccatctcgctgcccgacgatgtccgcaggcggctcaaagatttggaaagagacagcttaacagaaaaggaatgtgtgaaggagaaattgaatctcttgcacgaatttctgcaaacagaaataaagaatcagttatgtgacttggaaaccaaattacgtaaagaagaattatccgaggagggctacctggctaaagtcaaatcccttttaaataaagatttgtccttggagaacggtgctcatgcttacaaccgggaagtgaatggacgtctagaaaacgggaaccaagcaagaagtgaagcccgtagagtgggaatggcagatgccaacagcccccccaaacccctttccaaacctcgcacgcccaggaggagcaagtccgatggagaggctaagcgttcaagagaccctcctgcctcagcctcccaagtaactgggattagagctgaaccttcacctagccccaggattacaaggaaaagcaccaggcaaaccaccatcacatctcattttgcaaagggccctgccaaacggaaacctcaggaagagtctgaaagagccaaatcggatgagtccatcaaggaagaagacaaagaccaggatgagaagagacgtagagttacatccagagaacgagttgctagaccgcttcctgcagaagaacctgaaagagcaaaatcaggaacgcgcactgaaaaggaagaagaaagagatgaaaaagaagaaaagagactccgaagtcaaaccaaagaaccaacacccaaacagaaactgaaggaggagccggacagagaagccagggcaggcgtgcaggctgacgaggacgaagatggagacgagaaagatgagaagaagcacagaagtcaacccaaagatctagctgccaaacggaggcccgaagaaaaagaacctgaaaaagtaaatccacagatttctgatgaaaaagacgaggatgaaaagGAGGCTATGATGGTCACACGTTCCTGGACAGTGTGGAGTGTTACGACCCAGATACAGACACCTGGAGCGAGGTGACCCGAATGACATCGGGCCGGAGTGGGGTGGGCGTGGCTGTCACCATGGAGCCCTGCCGGAAGCAGATTGACCAGCAGAACTGTACCTGTTGA MPARTAPARVPTLAVPAISLPDDVRRRLKDLERDSLTEKECVKEKLNLLHEFLQTEIKNQLCDLETKLRKEELSEEGYLAKVKSLLNKDLSLENGAHAYNREVNGRLENGNQARSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQTKEPTPKQKLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAKRRPEEKEPEKVNPQISDEKDEDEKEAMMVTRSWTVWSVTTQIQTPGAR*PE*HRAGVGWAWLSPWSPAGSRLTSRTVPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE kelch like ECH associated protein 1 1 Yes NSCLC, breast carcinoma epithelial TSG missense, nonsense, frameshift 31546 PSMD3::PPP1R1B ENSG00000108344.15::ENSG00000131771.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PSMD3 ENSG00000108344.15 protein_coding + + chr17:39980807-39997959:+ chr17:39990197:+ chr17:38137060-38154212:+ chr17:38146450:+ PPP1R1B ENSG00000131771.14 protein_coding + + chr17:39626740-39636626:+ chr17:39627306:+ chr17:37782993-37792879:+ chr17:37783559:+ chr17:39992222 chr17:39627156 NA NA chr17:38148475 chr17:37783409 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPP1R1B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.34Mb] 197 75 197 75 ONLY_REF_SPLICE YES_LDAS 2.9404 GT 1.9329 AG 1.231 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31547 RANBP1::TANGO2 ENSG00000099901.18::ENSG00000183597.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1561 FALSE NA FALSE NA RANBP1 ENSG00000099901.18 protein_coding + + chr22:20115938-20127355:+ chr22:20119149:+ chr22:20103461-20114878:+ chr22:20106672:+ TANGO2 ENSG00000183597.16 protein_coding + + chr22:20017014-20067164:+ chr22:20063338:+ chr22:20004537-20054687:+ chr22:20050861:+ chr22:20121598,chr22:20121598 chr22:20062265,chr22:20062263 NA NA chr22:20109121,chr22:20109121 chr22:20049788,chr22:20049786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PKI|77-98|0.21^Ran_BP1|114-238|1.3e-58^PKI|247-277|3.6e-05^Ran_BP1|258-276|0.26 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.05Mb];LOCAL_REARRANGEMENT:+:[50012] 157 100 157 100 ONLY_REF_SPLICE YES_LDAS 2.7782 GT 1.7056 AG 1.7465 ENST00000430524.6 1-383 ENST00000432883.5 312-537 chr22|+|[0]20116185-20116430[2]|[0]20119013-20119149[1]<==>chr22|+|[2]20063338-20063442[1]|[2]20064542-20064662[2] atggggtcggccttgggccgggccaggcgcacactgagtgggcggcctttccagagggcaccatgcaaaacgcgcagggccttgtccctctctgcagcgctgcggaatgtcacaaaggcgcagggtggttgcccaaagagtttggttttgtggggctgcagaccaaagcggcccaggaagcgccggacgtcgctgaagctggcgtggcgaggcacgttctgcagctccagtttaaagatctcagaggacactcatgaggaccatgatacttccactgagaatacagacgagtccaaccatgaccctcagtttgagccaatagtttctcttcctgagcaagaaattaaaacactggaagaagatgaagaggaactttttaaaatGCAGCTGCCAGACCCGGCCATCGAGGACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCTACGGCACCAGAACCAACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTCACTGAGCGTAGCATGATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATGAGTTCACACTGCAGAGCTAA MGSALGRARRTLSGRPFQRAPCKTRRALSLSAALRNVTKAQGGCPKSLVLWGCRPKRPRKRRTSLKLAWRGTFCSSSLKISEDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMQLPDPAIEDQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVDADGHVTFTERSMMDKDLSHWETRTYEFTLQS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31548 CDCA4::JAG2 ENSG00000170779.11::ENSG00000184916.9 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 1563 FALSE NA FALSE NA CDCA4 ENSG00000170779.11 protein_coding - - chr14:105009573-105021083:- chr14:105020999:- chr14:105475910-105487420:- chr14:105487336:- JAG2 ENSG00000184916.9 protein_coding - - chr14:105140982-105168824:- chr14:105149320:- chr14:105607319-105635161:- chr14:105615657:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["JAG2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.12Mb] 140 2 140 2 ONLY_REF_SPLICE YES_LDAS 1.535 GT 1.6895 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31549 SMYD3::ZNF695 ENSG00000185420.19::ENSG00000197472.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1562 FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246507054:- chr1:245912644-246670614:- chr1:246670356:- ZNF695 ENSG00000197472.15 protein_coding - - chr1:246945547-247008093:- chr1:246945827:- chr1:247108849-247171395:- chr1:247109129:- chr1:246476358,chr1:246476361,chr1:246476361 chr1:246952565,chr1:246952565,chr1:246952559 NA NA chr1:246639660,chr1:246639663,chr1:246639663 chr1:247115867,chr1:247115867,chr1:247115861 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SET-PARTIAL|15-164~|9e-17^zf-MYND|49-87|5.2e-16 none ["SMYD3:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.59Mb] 134 43 134 43 ONLY_REF_SPLICE YES_LDAS 1.9134 GT 1.5301 AG 1.9086 ENST00000490107.6 1-164 ENST00000487338.6 489-519 chr1|-|[1]246507054-246507217[0]<==>chr1|-|[2]246945797-246945827[2] atggagccgctgaaggtggaaaagttcgcaaccgccaagaggggaaacgggctgcgcgccgtgaccccgctgcgccccggagagctactcttccgctcggatcccttggcgtacacggtgtgcaaggggagtcgtggcgtcgtctgcgaccgctgccttctcggGGTCCAGTCGTCGACCATCGAGCTGCTTTGA MEPLKVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGVQSSTIELL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Oral_cavity exact TRUE Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Esophageal carcinoma HEAD_AND_NECK,BLADDER,OESOPHAGUS no_match 246670356|246670356,246670356,246670356|246670356 TRUE|TRUE,TRUE,TRUE|TRUE 247131094|247109129,247109129,247131094|247109129 FALSE|TRUE,TRUE,FALSE|TRUE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 246507054 TRUE 246967792 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31552 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1572 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72203427:- chr10:73855790-73976892:- chr10:73963185:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72375872:- chr10:74127098-74385889:- chr10:74135630:- chr10:72199182,chr10:72199187,chr10:72111849 chr10:72392761,chr10:72392763,chr10:72495522 NA NA chr10:73958940,chr10:73958945,chr10:73871607 chr10:74152519,chr10:74152521,chr10:74255280 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KH_1|99-148|2.2e-11^TraC_F_IV|155-183|0.54^AKAP7_NLS|161-350|1.8e-56^DUF2299|185-240|2.2e-05^HVSL|193-315|3.6e-06^TraC_F_IV|265-319|8e-05 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.15Mb] 67 37 67 37 ONLY_REF_SPLICE YES_LDAS 1.1243 GT 1.7056 AG 1.9329 ENST00000394915.7 1-394 ENST00000635239.1 1193-1443 chr10|-|[0]72203427-72203524[2]|[1]72204422-72204505[2]|[1]72210732-72210831[1]|[0]72213187-72213298[0]<==>chr10|-|[2]72368195-72368355[1]|[0]72375783-72375872[1] atggaagttctgcgtccacagcttataagaattgatggccggaattacaggaagaatccagtccaagaacagacctatcaacatgaagaagatgaagaggacttctatcaaggctccatggagtgtgctgatgagccctgtgatgcctacgaggtggagcagaccccacaaggattccggtctactttgagggcccccagcttgctctataatctcattcacttgaacacatcaaacgactgtgggttccagaagataactttggattgtcagaatatttatacttggaagtccaggcatatagttggaaagagaggggacactaggaagaaaatagaaatggagaccaaaacttctattagcattcctaaacctggacaagacggggaaattgTGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATGGCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGGCCTGGAAAAGCCCAAAGACATGGGTTTCACTCGCCTCATGCAGGCCATGTGGAAATGTGCACAGGAAACTGCCTGGGACTTCGCTTTACCCAAACAGTAA MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus exact TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST exact 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,FALSE,FALSE,FALSE,FALSE,FALSE 74135630,74135630,74135630,74167795,74167795,74183129 TRUE,TRUE,TRUE,FALSE,FALSE,FALSE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31554 PRRC2B::PLPP7 ENSG00000288701.1::ENSG00000160539.6 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1564 FALSE NA FALSE NA PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131447804:+ chr9:134249023-134375584:+ chr9:134323191:+ PLPP7 ENSG00000160539.6 protein_coding + + chr9:131289459-131359022:+ chr9:131307923:+ chr9:134164846-134234409:+ chr9:134183310:+ chr9:131448561,chr9:131448560,chr9:131448561 chr9:131293824,chr9:131293824,chr9:131293822 NA NA chr9:134323948,chr9:134323947,chr9:134323948 chr9:134169211,chr9:134169211,chr9:134169209 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BAT2_N|1-188|3.2e-65^Pet100|475-516|0.00012^BAT2_N|564-617|2^BAT2_N|789-836|0.38^BAT2_N|883-990|0.035 none ["CCLE_StarF2019"] 65 65 65 65 ONLY_REF_SPLICE YES_LDAS 1.4054 GT 1.8295 AG 1.8295 ENST00000682501.1 1-1120 ENST00000372264.4 452-816 chr9|+|[0]131430145-131430259[0]|[1]131432617-131432794[1]|[2]131436620-131436722[2]|[0]131438989-131439061[0]|[1]131444185-131444328[0]|[1]131446401-131446642[2]|[0]131447085-131447206[1]|[2]131447662-131447804[0]<==>chr9|+|[1]131307923-131308287[2] atgtccgatcgtttggggcaaattaccaagggcaaggatgggaaaagcaagtactcgactctcagcctgtttgataagtataaaggaaaatcagtagacgcgattagatcctcagttattcctagacatggcttacagagtcttgggaaagttgctgcagcccggcgcatgccaccgcctgcaaacctgccaagcttgaagtctgaaaacaaaggaaacgaccccaacatcgtgatagtacccaaggacgggacgggatgggcaaacaagcaggatcagcaagacccaaagagttccagtgcgacggcctctcagccgccggagtcgctgccgcagccgggtttgcagaaatctgtctccaatttgcagaaaccgacacagtcaatcagtcaggagaatacaaattcagtgccaggtggaccaaagtcatgggcacagctgaatggaaagccagtaggacacgaaggtggtttaaggggctcaagccgactgttatccttctctcccgaggaatttccgacgctgaaagcagctggagggcaggacaaggctggcaaagaaaagggcgtcttagatctgtcgtatgggccaggaccaagcctccgccctcagaatgtgacaagctggagggagggcggtgggcgacacataatttctgccacgtctctgagcacctccccaactgagctgggcagcaggaactcgagtacgggagatggagccccctcctcggcatgtaccagcgattctaaggacccctctctccgcccggctcagcctgtccgaaaaggggcttcacagttcatgggaaatgtataccacccacctacataccatgacatgcttcctgcttttatgtgttcgccgaagtcatcagaaaaccagggtacagtggaacgaggctcttttccccttcctcagctccgccttgaacctcgagttccttttagacagttccagatgaatgaccaagacggaaaagaaaacaggctgggattgtctcgcccactccgcccactaaggcagctggtggagcgggcaccacggcccaccattatcaatgcggaaaacctgaagggccttgacgatctggacgccgatgccgatgatggctgggcagCCCTGCTCCTGGACATCATGACGGTGGCCGGCGTGCAGAAGCTCATCAAGCGGCGCGGCCCGTACGAGACGAGCCCCAGCCTCCTGGACTACCTCACCATGGACATCTACGCCTTCCCGGCCGGGCACGCCAGCCGCGCCGCCATGGTGTCCAAGTTCTTCCTCAGCCACCTGGTGCTGGCGGTGCCCCTGCGTGTGCTGCTGGTGCTCTGGGCCCTCTGCGTGGGCCTGTCCCGCGTGATGATCGGCCGCCACCACGTCACGGACGTCCTCTCCGGCTTTGTCATCGGCTACCTCCAGTTCCGTCTGGTGGAGCTGGTCTGGATGCCCTCCAGCACCTGCCAGATGCTCATCTCTGCCTGGTGA MSDRLGQITKGKDGKSKYSTLSLFDKYKGKSVDAIRSSVIPRHGLQSLGKVAAARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSATASQPPESLPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLNGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGVLDLSYGPGPSLRPQNVTSWREGGGRHIISATSLSTSPTELGSRNSSTGDGAPSSACTSDSKDPSLRPAQPVRKGASQFMGNVYHPPTYHDMLPAFMCSPKSSENQGTVERGSFPLPQLRLEPRVPFRQFQMNDQDGKENRLGLSRPLRPLRQLVERAPRPTIINAENLKGLDDLDADADDGWAALLLDIMTVAGVQKLIKRRGPYETSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31555 PSPC1::TOGARAM2 ENSG00000121390.19::ENSG00000189350.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19730239:- chr13:20248892-20357159:- chr13:20304379:- TOGARAM2 ENSG00000189350.13 protein_coding + + chr2:28956611-29052230:+ chr2:28994725:+ chr2:29179477-29275096:+ chr2:29217591:+ chr13:19678911,chr13:19678914 chr2:28994558,chr2:28994555 NA NA chr13:20253051,chr13:20253054 chr2:29217424,chr2:29217421 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 48 11 48 11 ONLY_REF_SPLICE YES_LDAS 0.6378 GT 1.7232 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31556 NAP1L4::GPBP1 ENSG00000205531.14::ENSG00000062194.16 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1573 FALSE NA FALSE NA NAP1L4 ENSG00000205531.14 protein_coding - - chr11:2944431-2992377:- chr11:2951259:- chr11:2965661-3013607:- chr11:2972489:- GPBP1 ENSG00000062194.16 protein_coding + + chr5:57173948-57264679:+ chr5:57230846:+ chr5:56469775-56560506:+ chr5:56526673:+ chr11:2950025,chr11:2950031 chr5:57223310,chr5:57223304 NA NA chr11:2971255,chr11:2971261 chr5:56519137,chr5:56519131 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NAP|77-350|9.4e-110^GEN1_C|126-194|0.015^GEN1_C|339-392|0.00041 ELL|273-337|1e-06^Vasculin|277-347|1^Vasculin|395-491|6.5e-37 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr5] 41 14 41 14 ONLY_REF_SPLICE YES_LDAS 0.5945 GT 1.7968 AG 1.7232 ENST00000448187.6 1-1158 ENST00000424459.7 64-1482 chr11|-|[2]2951259-2951315[0]|[2]2951780-2951809[0]|[2]2954527-2954646[0]|[2]2955744-2955766[1]|[0]2958399-2958544[2]|[1]2959770-2959909[0]|[2]2964680-2964751[0]|[2]2969803-2969934[0]|[2]2971448-2971534[0]|[2]2972102-2972279[2]|[1]2976024-2976123[1]|[0]2978284-2978342[2]|[1]2979207-2979220[0]<==>chr5|+|[0]57230846-57230969[0]|[1]57231098-57231321[2]|[0]57235966-57236032[0]|[1]57237113-57237172[0]|[1]57246300-57246484[2]|[0]57247075-57247215[2]|[0]57249409-57249576[2]|[0]57250954-57251141[1]|[2]57261180-57261282[2]|[0]57262594-57262752[2] atggcagatcacagtttttcagatggggttccttcagattccgtggaagctgctaaaaatgcaagtaacacagaaaagctcacagatcaggtgatgcagaatcctcgagttctggcagctttacaggagcgacttgacaatgtccctcacaccccttccagctacatcgaaacgcatgaggatgttgtatttcttactcccttttttagtttacctaaagcagtaaaaagaagaattaatgcattgaaacaacttcaggtgagatgtgctcacatagaagccaagttctatgaagaggtacatgacttggaaagaaagtatgcagcgctataccagcctctctttgacaagagaagagaatttatcaccggcgatgttgaaccaacagatgcggaatcggaatggcacagtgaaaatgaagaggaagagaaattggctggagacatgaaaagtaaagtagtcgtcacagaaaaagcagcggcaacggctgaagagccagatcccaaaggaattccagagttctggtttaccatcttcagaaatgtggacatgctgagtgaattagtccaggaatatgatgaaccaatcttgaaacacctgcaggatattaaagtgaaattttctgaccctggacagcctatgtcttttgtgttagagttccactttgaacccaacgactactttaccaactcagtcctgacaaaaacctacaagatgaaatcagaaccagataaggctgatcccttttcctttgaaggtcctgagattgtggactgtgacgggtgtactattgactggaagaaaggaaagaatgttactgtcaaaaccatcaagaaaaagcagaagcataagggtcgaggcactgttagaacaattacgaaacaagtacccaatgagtcctttttcaacttcttcaatccattgaaagcatccggggatggagaatcactggatgaagattctgaattcacattagcctctgattttgaaattggacactttttccgtgagcggatagtcccgcgggctgtgctgtacttcactggggaggccatagaagatgatgacaattttgaagaaggtgaagaaggagaagaggaggaattagaaggtgacgaggagggagaagacgaggatgatgcggaaattaaccccaagTCGTCATTGAATTTTGAGAAGCATTCTGAAAACTTTGCATGGACAGAGAATCGTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAACTTTGGAAGGAAAGAAAAAAATGGATGGCGTACACATGGAAGAAATGGTACAGAAAACATAAATCATCGAGGTGGATACCATGGTGGAAGTTCCCGTTCTCGTAGCAGTATTTTCCATGCAGGAAAAAGCCAAGGACTACATGAAAACAACATACCTGACAATGAAACCGGGAGGAAAGAAGACAAGAGAGAACGCAAACAGTTTGAAGCTGAGGATTTTCCGTCTTTAAATCCTGAGTATGAGAGAGAACCAAATCACAATAAGTCTTTAGCTGCAGGTGTGTGGGGCCTACACGCCCAGACACACACATACCCAACCAAAAAAATCTCCCAAGCTCCTCTCTTAGAATATCCTCCGAATCCTAAATCTAGAGCTCCAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAGTAGTAGGAAATCTTCCGTCACAGCCAGTTAAGAATGGAACTGGTCCAAGTGTTTATAAAGGTTTAGTCCCTAAACCTGCTGCTCCACCTACAAAACCTACACAATGGAAAAGCCAAACAAAAGAAAATAAAGTTGGAACTTCTTTCCCTCATGAGTCCACATTTGGCGTTGGCAACTTTAATGCTTTTAAATCAACTGCCAAGAACTTTAGTCCATCTACAAATTCAGTGAAAGAGTGTAATCGCTCAAATTCCTCTTCTCCTGTTGACAAACTTAATCAGCAGCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGAAGAGTGAATTTTTGAAAGCATTGAAAAGAGACAGAGTAGAAGAGGAACATGAAGATGAAAGCCGTGCTGGCTCAGAGAAGGATGACGACTCATTTAATTTACATAACAGCAATAGTACTCACCAAGAAAGGGATATAAACCGAAACTTCGATGAAAATGAAATTCCTCAAGAGAATGGCAATGCCTCAGTGATTTCCCAGCAGATCATTCGGTCTTCAACCTTCCCACAAACTGATGTTCTTTCAAGTTCACTTGAGGCAGAACACAGATTGTTAAAGGAAATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTGAGAAAAAATGGTATTTTGAAAAATGGCTTGATCTGTGACTTCAAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAACTGAGAATGATGACACAGAGACAAGTAGCAGTGATACATCAGATGACGACGATGTGTGA MADHSFSDGVPSDSVEAAKNASNTEKLTDQVMQNPRVLAALQERLDNVPHTPSSYIETHEDVVFLTPFFSLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESEWHSENEEEEKLAGDMKSKVVVTEKAAATAEEPDPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGTVRTITKQVPNESFFNFFNPLKASGDGESLDEDSEFTLASDFEIGHFFRERIVPRAVLYFTGEAIEDDDNFEEGEEGEEEELEGDEEGEDEDDAEINPKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKISQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31557 PRMT7::SLC7A6 ENSG00000132600.18::ENSG00000103064.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2838 TRUE 1079 PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68324832:+ chr16:68344854-68394755:+ chr16:68358735:+ SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68274691:+ chr16:68298419-68335726:+ chr16:68308594:+ chr16:68326458,chr16:68326405,chr16:68326454 chr16:68270282,chr16:68269925,chr16:68270275 NA NA chr16:68360361,chr16:68360308,chr16:68360357 chr16:68304185,chr16:68303828,chr16:68304178 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_REARRANGEMENT:+:[9151] 32 11 32 8.8 ONLY_REF_SPLICE YES_LDAS 0.441 GT 1.9899 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31559 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1567 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35025855:- chr5:34998206-35048240:- chr5:35025960:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRLR:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS[621] 31 44 31 18.83 ONLY_REF_SPLICE YES_LDAS 0.5387 GT 1.9656 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31560 RASA2::PXYLP1 ENSG00000155903.14::ENSG00000155893.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1576 FALSE NA FALSE NA RASA2 ENSG00000155903.14 protein_coding + + chr3:141487027-141615344:+ chr3:141586752:+ chr3:141205869-141334186:+ chr3:141305594:+ PXYLP1 ENSG00000155893.13 protein_coding + + chr3:141228726-141367753:+ chr3:141278342:+ chr3:140947568-141086595:+ chr3:140997184:+ chr3:141607308,chr3:141607305 chr3:141274551,chr3:141274545 NA NA chr3:141326150,chr3:141326147 chr3:140993393,chr3:140993387 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|39-140|6e-23^CEP76-C2|72-113|0.0016^PH|78-95|2.2^PH_8|92-137|0.7^C2|171-291|4.8e-20^PH|209-244|1.9^CEP76-C2|210-251|0.0028^RasGAP|380-445|5.2e-12^RasGAP|448-549|7.6e-24^PH|520-551|1.9^PH|607-704|1.8e-19^PH_8|619-703|8.1e-05^PH_11|623-666|0.00021^BTK|713-742|8.4e-17 His_Phos_2|78-415|9.3e-43 ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.19Mb] 29 12 29 10.24 ONLY_REF_SPLICE YES_LDAS 0.4242 GT 1.4295 AG 1.8295 ENST00000286364.9 1-1933 ENST00000508812.1 53-1416 chr3|+|[0]141487084-141487216[0]|[1]141512163-141512280[1]|[2]141516328-141516431[0]|[1]141529708-141529802[2]|[0]141540533-141540609[1]|[2]141553857-141553940[1]|[2]141555840-141555912[2]|[0]141558886-141558962[1]|[2]141559894-141559995[1]|[2]141570912-141571068[2]|[0]141571406-141571554[1]|[2]141572609-141572723[2]|[0]141573147-141573221[2]|[0]141573944-141574067[0]|[1]141577000-141577106[2]|[0]141580368-141580451[2]|[0]141581100-141581177[2]|[0]141586025-141586098[1]|[2]141586646-141586752[0]<==>chr3|+|[1]141278342-141278500[0]|[1]141279378-141279504[1]|[2]141287314-141287453[0]|[1]141292268-141293205[2] atggcggcggcggcgcctgctgctgcggcggcttcttccgaggcgccagcggcgagtgcgactgcagagcccgaggccggggaccaggacagtcgcgaggttcgagtgttgcagagcctgcggggcaagatctgtgaagcaaaaaatttattgccatatcttggaccccacaaaatgagagattgtttctgtaccataaatttggaccaggaagaagtttatcgtacccaagttgtggaaaaatctttaagcccatttttcagtgaagaattttactttgagattccaagaactttccagtatttgtctttctatgtttatgataagaatgttttacaaagagatctccgtataggaaaagtagccatcaaaaaagaagacttgtgtaatcacagtggcaaagaaacttggttttcattacagcctgttgactccaattcagaggttcagggtaaagttcaccttgaattaaaactgaatgaactgataacggagaatggaactgtatgccagcagcttgttgtacacatcaaggcatgccatgggttgcctctcataaatggccaaagctgtgacccttatgcaacagtttctctagtgggcccttctaggaatgaccaaaagaagacaaaagtaaagaagaaaacaagcaatccgcagtttaatgaaatcttttattttgaggtaaccagatccagtagttacaccagaaagtcccagttccaggtagaagaggaggacattgaaaagctagaaatcaggatcgacttgtggaacaatggaaacctagtccaagatgttttcctaggtgagattaaggttcctgtgaacgtattaagaactgattcctctcatcaagcctggtacttgctacagccaagagacaatggaaacaagtcatccaaaactgatgacctggggtctcttcgattaaatatatgttatacagaagactacgtgcttccttcagagtactatggtcctttgaaaactttgctgctaaaatcaccagatgttcaaccaatatctgcctcagctgcttacattttgagtgaaatatgtcgagataaaaatgatgctgttttgccccttgtacgactgctgctgcaccatgataaacttgttccttttgccactgctgtggctgaattagacttgaaggatacacaagatgcaaacacaatttttagaggaaattccctggctacccgatgtctggatgagatgatgaaaatagtgggagggcactacctgaaagtaacattaaaacctattcttgatgagatatgtgactcctcaaaatcctgtgaaatcgatcctattaaattgaaagagggagataatgtagaaaataataaggagaatctgcgctactatgtagacaagttattcaatacaattgtaaaatcaagtatgagctgccccactgtaatgtgtgatatcttttattctctaaggcagatggctactcagagatttcctaatgaccctcatgttcagtattctgcagtgagcagctttgtatttcttcgtttctttgctgtagccgtagtatcacctcatacttttcatttgcgacctcatcatccagatgcacagacaattagaacattaactctcatctcaaaaactatacaaactttgggaagctgggggagtctgtccaaaagcaagtcaagtttcaaagagacattcatgtgtgaatttttcaaaatgtttcaagaagaaggatatattatagcagttaaaaagttcttggatgaaatttcatctactgaaactaaagagtccagtggtacgagtgagcctgtgcacctgaaagaaggtgagatgtataaaagagctcaaggaagaactcggattggaaaaaagaattttaagaaacgatggttctgcttaacaagcagagagctcacctaccacaaacagccagTCCACCTGATCCCGGTGTCGACTCCTAAGAATGGAATGAGTAGCAAGAGTCGAAAGAGAATCATGCCCGACCCTGTGACGGAGCCCCCTGTGACAGACCCCGTTTATGAAGCTCTTTTGTACTGCAACATCCCCAGCGTGGCCGAGCGCAGCATGGAAGGTCATGCCCCGCATCATTTTAAGCTGGTCTCAGTGCATGTGTTCATTCGCCACGGAGACAGGTACCCACTGTATGTCATTCCCAAAACAAAGCGACCAGAAATTGACTGCACTCTGGTGGCTAACAGGAAACCGTATCACCCAAAACTGGAAGCTTTCATTAGTCACATGTCAAAAGGATCCGGAGCCTCTTTCGAAAGCCCCTTGAACTCCTTGCCTCTTTACCCAAATCACCCATTGTGTGAGATGGGAGAGCTCACACAGACAGGAGTTGTGCAGCATTTGCAGAACGGTCAGCTGCTGAGGGATATCTATCTAAAGAAACACAAACTCCTGCCCAATGATTGGTCTGCAGACCAGCTCTATTTAGAGACCACTGGGAAAAGCCGGACCCTACAAAGTGGGCTGGCCTTGCTTTATGGCTTTCTCCCAGATTTTGACTGGAAGAAGATTTATTTCAGGCACCAGCCAAGTGCGCTGTTCTGCTCTGGAAGCTGCTATTGCCCGGTAAGAAACCAGTATCTGGAAAAGGAGCAGCGTCGTCAGTACCTCCTACGTTTGAAAAACAGCCAGCTGGAGAAGACCTACGGGGAGATGGCCAAGATCGTGGATGTCCCCACCAAGCAGCTTAGAGCTGCCAACCCCATAGACTCCATGCTCTGCCACTTCTGCCACAATGTCAGCTTTCCCTGTACCAGAAATGGCTGTGTTGACATGGAGCACTTCAAGGTAATTAAGACCCATCAGATCGAGGATGAAAGGGAAAGACGGGAGAAGAAATTGTACTTCGGGTATTCTCTCCTGGGTGCCCACCCCATCCTGAACCAAACCATCGGCCGGATGCAGCGTGCCACCGAGGGCAGGAAAGAAGAGCTCTTTGCCCTCTACTCTGCTCATGATGTCACTCTGTCACCAGTTCTCAGTGCCTTGGGCCTTTCAGAAGCCAGGTTCCCAAGGTTTGCAGCCAGGTTGATCTTTGAGCTTTGGCAAGACAGAGAAAAGCCCAGTGAACATTCCGTCCGGATTCTTTACAATGGCGTCGATGTCACATTCCACACCTCTTTCTGCCAAGACCACCACAAGCGTTCTCCCAAGCCCATGTGCCCGCTTGAAAACTTGGTCCGCTTTGTGAAAAGGGACATGTTTGTAGCCCTGGGTGGCAGTGGTACAAATTATTATGATGCATGTCACAGGGAAGGATTCTAA MAAAAPAAAAASSEAPAASATAEPEAGDQDSREVRVLQSLRGKICEAKNLLPYLGPHKMRDCFCTINLDQEEVYRTQVVEKSLSPFFSEEFYFEIPRTFQYLSFYVYDKNVLQRDLRIGKVAIKKEDLCNHSGKETWFSLQPVDSNSEVQGKVHLELKLNELITENGTVCQQLVVHIKACHGLPLINGQSCDPYATVSLVGPSRNDQKKTKVKKKTSNPQFNEIFYFEVTRSSSYTRKSQFQVEEEDIEKLEIRIDLWNNGNLVQDVFLGEIKVPVNVLRTDSSHQAWYLLQPRDNGNKSSKTDDLGSLRLNICYTEDYVLPSEYYGPLKTLLLKSPDVQPISASAAYILSEICRDKNDAVLPLVRLLLHHDKLVPFATAVAELDLKDTQDANTIFRGNSLATRCLDEMMKIVGGHYLKVTLKPILDEICDSSKSCEIDPIKLKEGDNVENNKENLRYYVDKLFNTIVKSSMSCPTVMCDIFYSLRQMATQRFPNDPHVQYSAVSSFVFLRFFAVAVVSPHTFHLRPHHPDAQTIRTLTLISKTIQTLGSWGSLSKSKSSFKETFMCEFFKMFQEEGYIIAVKKFLDEISSTETKESSGTSEPVHLKEGEMYKRAQGRTRIGKKNFKKRWFCLTSRELTYHKQPVHLIPVSTPKNGMSSKSRKRIMPDPVTEPPVTDPVYEALLYCNIPSVAERSMEGHAPHHFKLVSVHVFIRHGDRYPLYVIPKTKRPEIDCTLVANRKPYHPKLEAFISHMSKGSGASFESPLNSLPLYPNHPLCEMGELTQTGVVQHLQNGQLLRDIYLKKHKLLPNDWSADQLYLETTGKSRTLQSGLALLYGFLPDFDWKKIYFRHQPSALFCSGSCYCPVRNQYLEKEQRRQYLLRLKNSQLEKTYGEMAKIVDVPTKQLRAANPIDSMLCHFCHNVSFPCTRNGCVDMEHFKVIKTHQIEDERERREKKLYFGYSLLGAHPILNQTIGRMQRATEGRKEELFALYSAHDVTLSPVLSALGLSEARFPRFAARLIFELWQDREKPSEHSVRILYNGVDVTFHTSFCQDHHKRSPKPMCPLENLVRFVKRDMFVALGGSGTNYYDACHREGF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31563 RRBP1::OVOL2 ENSG00000125844.17::ENSG00000125850.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 1578 TRUE 2844 TRUE 1083 RRBP1 ENSG00000125844.17 protein_coding - - chr20:17613678-17682295:- chr20:17682028:- chr20:17594323-17662940:- chr20:17662673:- OVOL2 ENSG00000125850.11 protein_coding - - chr20:17956979-18059188:- chr20:18024952:- chr20:17937623-18039832:- chr20:18005596:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.27Mb] 22 14 22 7.33 ONLY_REF_SPLICE YES_LDAS 0.317 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 17639241|17639250 FALSE|FALSE 18005596|18005596 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31565 AXIN1::LMF1 ENSG00000103126.15::ENSG00000103227.19 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1574 FALSE NA FALSE NA AXIN1 ENSG00000103126.15 protein_coding - - chr16:287440-352723:- chr16:304304:- chr16:337440-402723:- chr16:354304:- LMF1 ENSG00000103227.19 protein_coding - - chr16:853634-981318:- chr16:854706:- chr16:903634-1031318:- chr16:904706:- chr16:298831 chr16:864875 NA NA chr16:348831 chr16:914875 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AXIN1_TNKS_BD|9-82|1e-29^RGS|88-210|6e-31^Axin_b-cat_bind|465-496|2.5e-17^DIX|783-858|1.1e-32 none ["AXIN1:FoundationOne_panel","AXIN1:Oncogene","AXIN1:ArcherDX_panel"];["LMF1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.50Mb] 22 18 22 18 ONLY_REF_SPLICE YES_LDAS 0.4324 GT 1.8892 AG 1.7232 ENST00000262320.8 1-1254 ENST00000543238.5 819-993 chr16|-|[2]304304-304441[0]|[2]309973-310069[2]|[1]314543-314683[2]|[1]346148-347025[0]<==>chr16|-|[2]854532-854706[2] atgaatatccaagagcagggtttccccttggacctcggagcaagtttcaccgaagatgctccccgacccccagtgcctggtgaggagggagaactggtgtccacagacccgaggcccgccagctacagtttctgctccgggaaaggtgttggcattaaaggtgagacttcgacggccactccgaggcgctcggatctggacctggggtatgagcctgagggcagtgcctcccccaccccaccatacttgaagtgggctgagtcactgcattccctgctggatgaccaagatgggataagcctgttcaggactttcctgaagcaggagggctgtgccgacttgctggacttctggtttgcctgcactggcttcaggaagctggagccctgtgactcgaacgaggagaagaggctgaagctggcgagagccatctaccgaaagtacattcttgataacaatggcatcgtgtcccggcagaccaagccagccaccaagagcttcataaagggctgcatcatgaagcagctgatcgatcctgccatgtttgaccaggcccagaccgaaatccaggccactatggaggaaaacacctatccctccttccttaagtctgatatttatttggaatatacgaggacaggctcggagagccccaaagtctgtagtgaccagagctctgggtcagggacagggaagggcatatctggatacctgccgaccttaaatgaagatgaggaatggaagtgtgaccaggacatggatgaggacgatggcagagacgctgctccccccggaagactccctcagaagctgctcctggagacagctgccccgagggtctcctccagtagacggtacagcgaaggcagagagttcaggtatggatcctggcgggagccagtcaacccctattatgtcaatgccggctatgccctggccccagccaccagtgccaacgacagcgagcagcagagcctgtccagcgatgcagacaccctgtccctcacggacagcagcgtggatgggatccccccatacaggatccgtaagcagcaccgcagggagatgcaggagagcgtgcaggtcaatgggcgggtgcccctacctcacattccccgcacgtaccgggtgccgaaggaggtccgcgtggagcctcagaagttcgcggaggagctcatccaccgcctggaggctgtgcagcgcacgcgggaggccgaggagaagctggaggagcggctgaagcgcgtgcgcatgGTGGGTCCGAGGAGAGCACTACAGGTACAAGTTCAGCCGTCCTGGGGGCAGGCACGCCGCCGAGGGCAAGTGGTGGGTGCGGAAGAGGATCGGAGCCTACTTCCCTCCGCTCAGCCTGGAGGAGCTGAGGCCCTACTTCAGGGACCGTGGGTGGCCTCTGCCCGGGCCCCTCTAG MNIQEQGFPLDLGASFTEDAPRPPVPGEEGELVSTDPRPASYSFCSGKGVGIKGETSTATPRRSDLDLGYEPEGSASPTPPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEPCDSNEEKRLKLARAIYRKYILDNNGIVSRQTKPATKSFIKGCIMKQLIDPAMFDQAQTEIQATMEENTYPSFLKSDIYLEYTRTGSESPKVCSDQSSGSGTGKGISGYLPTLNEDEEWKCDQDMDEDDGRDAAPPGRLPQKLLLETAAPRVSSSRRYSEGREFRYGSWREPVNPYYVNAGYALAPATSANDSEQQSLSSDADTLSLTDSSVDGIPPYRIRKQHRREMQESVQVNGRVPLPHIPRTYRVPKEVRVEPQKFAEELIHRLEAVQRTREAEEKLEERLKRVRMVGPRRALQVQVQPSWGQARRRGQVVGAEEDRSLLPSAQPGGAEALLQGPWVASARAPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE axin 1 1 Yes colorectal, endometrial, prostate, hepatocellular carcinoma, hepatoblastoma, sporadic medulloblastoma epithelial, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 31567 RAB11FIP3::TUBB3 ENSG00000090565.17::ENSG00000258947.8 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1577 FALSE NA FALSE NA RAB11FIP3 ENSG00000090565.17 protein_coding + + chr16:425649-523011:+ chr16:471389:+ chr16:475649-573011:+ chr16:521389:+ TUBB3 ENSG00000258947.8 protein_coding + + chr16:89921392-89938761:+ chr16:89932571:+ chr16:89987800-90005169:+ chr16:89998979:+ chr16:481664 chr16:89929067 NA NA chr16:531664 chr16:89995475 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EF-hand_7|206-263|2.7e-11^EF-hand_6|206-235|7.2e-07^EF-hand_1|207-230|1.5e-05^EF-hand_5|207-230|3.1e-05^EF-hand_8|208-232|0.00093^EF-hand_9|209-260|0.00016^EF-hand_8|237-261|0.00056^EF-hand_6|240-264|0.0098^EF-hand_1|246-264|0.021^EF-hand_5|252-259|1.6^Crescentin|457-584|5.8e-06^ZapB|469-509|0.12^WD40_alt|470-478|4.3^bZIP_1|488-509|0.42^PIN_12|513-615|0.0017^bZIP_1|537-576|0.0001^ZapB|540-586|0.00076^WD40_alt|540-559|0.27^EF-hand_7|542-556|7.9^RBD-FIP|543-559|2.2^bZIP_1|564-587|0.056^ZapB|569-629|0.00022^Crescentin|582-678|0.17^bZIP_1|610-631|2^RBD-FIP|620-635|1.9^WD40_alt|648-677|1.3e-05^bZIP_1|658-689|8.3e-05^PIN_12|658-726|0.015^ZapB|661-699|2.4e-05^RBD-FIP|662-678|7.4^EF-hand_7|714-736|0.49^EF-hand_6|715-725|3.3^EF-hand_1|715-726|1.4^RBD-FIP|716-756|3.3e-25 Tubulin-PARTIAL|~58-211|9.6e-68^Misat_Tub_SegII-PARTIAL|~58-72|4.2e-09^Tubulin_3|120-193|8.9e-06^Tubulin_2|136-177|2.3e-05^Tubulin_C|261-382|6.2e-47^Misat_Tub_SegII|430-438|3 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:89.40Mb] 19 11 19 5.22 ONLY_REF_SPLICE YES_LDAS 0.2618 GC 1.9656 AG 1.9656 ENST00000262305.9 1-903 ENST00000315491.12 58-1353 chr16|+|[0]426007-426720[2]|[0]461404-461497[0]|[1]471295-471389[2]<==>chr16|+|[0]89932571-89932679[0]|[1]89933468-89933578[0]|[1]89934729-89935804[2] atggcgtcggccccgccggcctcgcccccgggctcggagccgccggggcccgacccggagccgggcgggccggacgggccgggggcggcacaactggctccgggccctgcggagctacgcctcggagcgcccgtcggcggccccgacccgcagtccccgggcctggatgagcctgcgcccggggccgctgcagatggcggggcgcgttggagcgccgggccggccccggggctggagggaggcccgcgagaccccgggccgtccgccccgccgccgcgctccggcccgcgggggcagcttgcgagccccgacgccccgggcccagggccgcgctccgaagcgccgcttccagaactcgacccgttgttctcctggactgaggagcccgaggagtgtggccccgcgagctgcccggagagcgcgcctttccgcttgcaggggtccagcagcagccaccgagcgcggggcgaggtcgacgtcttctctcccttccccgcgcccacggcgggcgagctggcgctggagcaaggtcccgggtccccgccgcagccctcggacctcagccagacccacccccttccgagcgagcccgtggggagtcaggaggacggcccccgcctccgagccgtgttcgatgccctggacggggatggggacggtttcgtccgcatcgaggacttcatccagtttgctacggtctacggggcagagcaggtgaaggacttaactaagtacttggatcccagtgggctcggcgtgatcagctttgaagacttctaccaagggatcacagccatcagaaacggagatcctgatggccagtgctacggtggtgtcgcttctgcccaagatgaggagcccctggcctgcccggacgagttcgatgacttcgtcacctatgagTTCTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCAGCGGCAACTACGTGGGCGACTCGGACTTGCAGCTGGAGCGGATCAGCGTCTACTACAACGAGGCCTCTTCTCACAAGTACGTGCCTCGAGCCATTCTGGTGGACCTGGAACCCGGAACCATGGACAGTGTCCGCTCAGGGGCCTTTGGACATCTCTTCAGGCCTGACAATTTCATCTTTGGTCAGAGTGGGGCCGGCAACAACTGGGCCAAGGGTCACTACACGGAGGGGGCGGAGCTGGTGGATTCGGTCCTGGATGTGGTGCGGAAGGAGTGTGAAAACTGCGACTGCCTGCAGGGCTTCCAGCTGACCCACTCGCTGGGGGGCGGCACGGGCTCCGGCATGGGCACGTTGCTCATCAGCAAGGTGCGTGAGGAGTATCCCGACCGCATCATGAACACCTTCAGCGTCGTGCCCTCACCCAAGGTGTCAGACACGGTGGTGGAGCCCTACAACGCCACGCTGTCCATCCACCAGCTGGTGGAGAACACGGATGAGACCTACTGCATCGACAACGAGGCGCTCTACGACATCTGCTTCCGCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAACCACCTGGTATCGGCCACCATGAGCGGAGTCACCACCTCCTTGCGCTTCCCGGGCCAGCTCAACGCTGACCTGCGCAAGCTGGCCGTCAACATGGTGCCCTTCCCGCGCCTGCACTTCTTCATGCCCGGCTTCGCCCCCCTCACAGCCCGGGGCAGCCAGCAGTACCGGGCCCTGACCGTGCCCGAGCTCACCCAGCAGATGTTCGATGCCAAGAACATGATGGCCGCCTGCGACCCGCGCCACGGCCGCTACCTGACGGTGGCCACCGTGTTCCGGGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGGCCATCCAGAGCAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAACGTGAAGGTGGCCGTGTGTGACATCCCGCCCCGCGGCCTCAAGATGTCCTCCACCTTCATCGGGAACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTGGTGTCCGAGTACCAGCAGTACCAGGACGCCACGGCCGAGGAAGAGGGCGAGATGTACGAAGACGACGAGGAGGAGTCGGAGGCCCAGGGCCCCAAGTGA MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPGPGPRSEAPLPELDPLFSWTEEPEECGPASCPESAPFRLQGSSSSHRARGEVDVFSPFPAPTAGELALEQGPGSPPQPSDLSQTHPLPSEPVGSQEDGPRLRAVFDALDGDGDGFVRIEDFIQFATVYGAEQVKDLTKYLDPSGLGVISFEDFYQGITAIRNGDPDGQCYGGVASAQDEEPLACPDEFDDFVTYEFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESEAQGPK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31569 GRHL2::NCALD ENSG00000083307.12::ENSG00000104490.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1581 FALSE NA FALSE NA GRHL2 ENSG00000083307.12 protein_coding + + chr8:101492439-101669726:+ chr8:101577519:+ chr8:102504667-102681954:+ chr8:102589747:+ NCALD ENSG00000104490.18 protein_coding - - chr8:101686542-102124907:- chr8:101692896:- chr8:102698770-103137135:- chr8:102705124:- chr8:101595746 chr8:101707150 NA NA chr8:102607974 chr8:102719378 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CP2|229-438|1e-95^Sp-DndD|563-587|7.4e-07 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];LOCAL_INVERSION:+:-:[16817] 18 8 18 8 ONLY_REF_SPLICE YES_LDAS 0.2811 GT 1.9086 AG 1.8892 ENST00000646743.1 1-1003 ENST00000522951.5 379-585 chr8|+|[0]101492770-101492789[1]|[2]101543241-101543436[2]|[0]101552715-101552782[1]|[2]101558419-101558812[2]|[0]101570339-101570394[1]|[2]101573668-101573824[2]|[0]101577408-101577519[0]<==>chr8|-|[2]101689059-101689159[1]|[0]101692791-101692896[0] atgtcacaagagtcggacaataataaaagactagtggccttagtgcccatgcccagtgaccctccattcaatacccgaagagcctacaccagtgaggatgaagcctggaagtcatacttggagaatcccctgacagcagccaccaaggccatgatgagcattaatggtgatgaggacagtgctgctgccctcggcctgctctatgactactacaaggttcctcgagacaagaggctgctgtctgtaagcaaagcaagtgacagccaagaagaccaggagaaaagaaactgccttggcaccagtgaagcccagagtaatttgagtggaggagaaaaccgagtgcaagtcctaaagactgttccagtgaacctttccctaaatcaagatcacctggagaattccaagcgggaacagtacagcatcagcttccccgagagctctgccatcatcccggtgtcgggaatcacggtggtgaaagctgaagatttcacaccagttttcatggccccacctgtgcactatccccggggagatggggaagagcaacgagtggttatctttgaacagactcagtatgacgtgccctcgctggccacccacagcgcctatctcaaagacgaccagcgcagcactccggacagcacatacagcgagagcttcaaggacgcagccacagagaaatttcggagtgcttcagttggggctgaggagtacatgtatgatcagacatcaagtggcacatttcagtacaccctggaagccaccaaatctctccgtcagaagcagggggagggccccatgacctacctcaacaaaggacagttctatgccataacactcagcgagaccggagacaacaaatgcttccgacaccccatcagcaaagtcaggagtgtggtgatggtggtcttcagtgaagacaaaaacagagatgaacagctcaaatactggaaatactggcactctcggcagcatacggcgaagcagagggtccttgacattgGCAATCTATAAGATGGTTTCCTCTGTAATGAAAATGCCTGAAGATGAGTCAACCCCAGAGAAAAGAACAGAAAAGATCTTCCGCCAGATGGACACCAATAGAGACGCTTCTTTTGTCGTGGATGCTTCGTGGGAATGCCCAGAGCCCCAGTGTGCTTGTGGAGAGCATGGACAGACTTCGTGGTGTTCATTGTTTGATGATTTTTAA MSQESDNNKRLVALVPMPSDPPFNTRRAYTSEDEAWKSYLENPLTAATKAMMSINGDEDSAAALGLLYDYYKVPRDKRLLSVSKASDSQEDQEKRNCLGTSEAQSNLSGGENRVQVLKTVPVNLSLNQDHLENSKREQYSISFPESSAIIPVSGITVVKAEDFTPVFMAPPVHYPRGDGEEQRVVIFEQTQYDVPSLATHSAYLKDDQRSTPDSTYSESFKDAATEKFRSASVGAEEYMYDQTSSGTFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDIGNL*DGFLCNENA*R*VNPREKNRKDLPPDGHQ*RRFFCRGCFVGMPRAPVCLWRAWTDFVVFIV**FL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Prostate adenocarcinoma UTERUS,PROSTATE no_match 102611379|102611379,102631925|102644593 FALSE|FALSE,FALSE|FALSE 102731876|102733579,102928086|102701634 FALSE|FALSE,FALSE|FALSE YES,PARTIALLY CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31570 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1568 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35026510:- chr5:34998206-35048240:- chr5:35026615:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRLR:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS[621] 17 51 17 17.16 ONLY_REF_SPLICE YES_LDAS 0.3693 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31571 MTRES1::CRYBG1 ENSG00000130349.10::ENSG00000112297.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1592 FALSE NA FALSE NA MTRES1 ENSG00000130349.10 protein_coding + + chr6:107028199-107051586:+ chr6:107028271:+ chr6:107349403-107372790:+ chr6:107349475:+ CRYBG1 ENSG00000112297.18 protein_coding + + chr6:106360717-106572017:+ chr6:106511430:+ chr6:106808592-107019892:+ chr6:106959305:+ chr6:107035063,chr6:107035059 chr6:106508575,chr6:106508568 NA NA chr6:107356267,chr6:107356263 chr6:106956450,chr6:106956443 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 0 16 0 ONLY_REF_SPLICE YES_LDAS 0.173 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31573 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1571 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35010149:- chr5:34998206-35048240:- chr5:35010254:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRLR:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS[621] 14 8 14 0.87 ONLY_REF_SPLICE YES_LDAS 0.1607 GT 1.9656 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31574 CORO7::VPS13D ENSG00000262246.6::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1580 TRUE 2846 TRUE 1084 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4416459:- chr16:4404543-4475706:- chr16:4466460:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF1899-PARTIAL|3-60~|1.1e-15 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr1] 14 9 14 3.6 ONLY_REF_SPLICE YES_LDAS 0.1902 GT 1.231 AG 1.8892 ENST00000575038.5 1-60 ENST00000011700.10 8799-9632 chr16|-|[2]4416459-4416518[0]<==>chr1|+|[0]12455998-12456130[0]|[1]12460201-12460396[1]|[2]12497500-12497631[1]|[2]12506853-12507093[2]|[0]12508893-12509024[2] atgaaccgcttcagggtgtccaagttccggcacaccgaggctcggccgccccgccgcgagTTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATGGTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGGTGTCAGCGGTTTCATATCTGGCCTTGGAAAAGGGCTTGTTGGCACTGTAACCAAGCCAGTGGCAGGCGCCCTGGATTTTGCATCAGAAACAGCCCAGGCGGTGAGAGACACAGCCACACTCAGCGGCCCCAGGACTCAAGCACAGAGGGTTCGGAAACCGCGTTGCTGCACGGGGCCCCAGGGGCTGCTTCCCCGATATTCTGAGAGCCAGGCGGAAGGACAGGAGCAGCTCTTCAAACTCACAGACAACATACAGGACGAATTCTTCATCGCTGTGGAGAACATTGACAGCTACTGCGTGCTCATCTCCTCCAAAGCTGTTTACTTCCTGAAAAGTGGAGACTACGTGGATCGAGAAGCCATTTTCCTAGAAGTCAAATACGATGACCTCTACCACTGCCTTGTCTCCAAAGACCATGGGAAGGTGTATGTGCAGGTGACCAAGAAAGCCGTGAGCACGAGCAGTGGAGTGTCCATCCCCGGCCCCTCCCACCAGAAGCCCATGGTCCATGTGAAATCTGAGGTCCTTGCTGTCAAGTTGTCACAAGAAATAAACTACGCAAAGAGCCTCTACTATGAACAGCAGCTTATGTTAAGACTCAGCGAAAACCGAGAGCAGCTGGAGCTGGACTCCTGA MNRFRVSKFRHTEARPPRREFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENIDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVSTSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENREQLELDS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31575 RRBP1::OVOL2 ENSG00000125844.17::ENSG00000125850.11 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 1579 TRUE 2844 TRUE 1083 RRBP1 ENSG00000125844.17 protein_coding - - chr20:17613678-17682295:- chr20:17679999:- chr20:17594323-17662940:- chr20:17660644:- OVOL2 ENSG00000125850.11 protein_coding - - chr20:17956979-18059188:- chr20:18024952:- chr20:17937623-18039832:- chr20:18005596:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.27Mb] 14 16 14 6.74 ONLY_REF_SPLICE YES_LDAS 0.2242 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 17639241|17639250 FALSE|FALSE 18005596|18005596 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31576 CORO7::VPS13D ENSG00000262246.6::ENSG00000048707.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2846 TRUE 1084 CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4412356:- chr16:4404543-4475706:- chr16:4462357:- VPS13D ENSG00000048707.15 protein_coding + + chr1:12230030-12512047:+ chr1:12455998:+ chr1:12290087-12572099:+ chr1:12516054:+ chr16:4410972,chr16:4410974 chr1:12447897,chr1:12447895 NA NA chr16:4460973,chr16:4460975 chr1:12507953,chr1:12507951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF1899|3-21|2e-07 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr1] 14 16 14 12.4 ONLY_REF_SPLICE YES_LDAS 0.2853 GT 1.9329 AG 1.8892 ENST00000572153.5 1-135 ENST00000011700.10 8799-9632 chr16|-|[2]4412356-4412430[0]|[2]4416459-4416518[0]<==>chr1|+|[0]12455998-12456130[0]|[1]12460201-12460396[1]|[2]12497500-12497631[1]|[2]12506853-12507093[2]|[0]12508893-12509024[2] atgaaccgcttcagggtgtccaagttccggcacaccgaggctcggccgccccgccgcgaggtgtactgggcattgtgcctctgcaaggccaaggagaggacaagcgacgcgtggcccacctgggctgccattcagTTTGCTGGAACATTATCAGATGGCTTAGGGAAGACGATGGACAATCGGCATCAGTCAGAGCGGGAGTACATCAGGTACCATGCAGCCACAAGTGGTGAACACCTTGTAGCCGGCATCCATGGCCTGGCTCATGGTATCATTGGTGGACTGACCAGTGTTATAACTTCGACAGTGGAAGGTGTGAAAACAGAAGGGGGTGTCAGCGGTTTCATATCTGGCCTTGGAAAAGGGCTTGTTGGCACTGTAACCAAGCCAGTGGCAGGCGCCCTGGATTTTGCATCAGAAACAGCCCAGGCGGTGAGAGACACAGCCACACTCAGCGGCCCCAGGACTCAAGCACAGAGGGTTCGGAAACCGCGTTGCTGCACGGGGCCCCAGGGGCTGCTTCCCCGATATTCTGAGAGCCAGGCGGAAGGACAGGAGCAGCTCTTCAAACTCACAGACAACATACAGGACGAATTCTTCATCGCTGTGGAGAACATTGACAGCTACTGCGTGCTCATCTCCTCCAAAGCTGTTTACTTCCTGAAAAGTGGAGACTACGTGGATCGAGAAGCCATTTTCCTAGAAGTCAAATACGATGACCTCTACCACTGCCTTGTCTCCAAAGACCATGGGAAGGTGTATGTGCAGGTGACCAAGAAAGCCGTGAGCACGAGCAGTGGAGTGTCCATCCCCGGCCCCTCCCACCAGAAGCCCATGGTCCATGTGAAATCTGAGGTCCTTGCTGTCAAGTTGTCACAAGAAATAAACTACGCAAAGAGCCTCTACTATGAACAGCAGCTTATGTTAAGACTCAGCGAAAACCGAGAGCAGCTGGAGCTGGACTCCTGA MNRFRVSKFRHTEARPPRREVYWALCLCKAKERTSDAWPTWAAIQFAGTLSDGLGKTMDNRHQSEREYIRYHAATSGEHLVAGIHGLAHGIIGGLTSVITSTVEGVKTEGGVSGFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSGPRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENIDSYCVLISSKAVYFLKSGDYVDREAIFLEVKYDDLYHCLVSKDHGKVYVQVTKKAVSTSSGVSIPGPSHQKPMVHVKSEVLAVKLSQEINYAKSLYYEQQLMLRLSENREQLELDS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31577 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1569 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35230268:- chr5:35048861-35230589:- chr5:35230370:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35014119:- chr5:34998206-35048240:- chr5:35014224:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRLR:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS[621] 13 24 13 3.04 ONLY_REF_SPLICE YES_LDAS 0.1734 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31580 INTS4::GAB2 ENSG00000149262.19::ENSG00000033327.13 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1586 FALSE NA FALSE NA INTS4 ENSG00000149262.19 protein_coding - - chr11:77874418-77994715:- chr11:77991108:- chr11:77585464-77705761:- chr11:77702154:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78280901:- chr11:77926339-78129394:- chr11:77991947:- chr11:77985143,chr11:77985151 chr11:78326340,chr11:78326345 NA NA chr11:77696189,chr11:77696197 chr11:78037386,chr11:78037391 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Adaptin_N|39-182|0.00086^Cnd3|51-81|0.76^DUF445-PARTIAL|53-246~|3.4e-05^RTP1_C1|70-101|0.087^HEAT|75-101|0.031^HEAT_2|76-99|0.18^CLASP_N|76-141|0.23^MMS19_N|79-210|0.036^PDS5|98-146|0.53^HEAT_2|114-183|0.0053^Cnd3|136-220|0.041^CLASP_N|143-223|0.00063^Vac14_Fab1_bd|151-170|6.1^HEAT_EZ|151-177|0.39^HEAT|152-178|0.002^Cnd1|153-188|0.18^RTP1_C1|155-225|0.021^PDS5-PARTIAL|157-246~|1.7e-10^Cohesin_HEAT|157-174|0.27^MMS19_N|157-228|0.11^SCD|161-225|0.00071^Cohesin_HEAT|184-216|2.7e-06^HEAT_2-PARTIAL|193-246~|2.8e-05^Adaptin_N-PARTIAL|193-246~|1.3e-06^Vac14_Fab1_bd-PARTIAL|195-246~|7.8e-07^HEAT|203-223|0.00013^RTP1_C1-PARTIAL|203-246~|0.013^Cnd1-PARTIAL|204-246~|6e-06^HEAT_EZ-PARTIAL|209-246~|0.0053^CLASP_N-PARTIAL|231-246~|0.0054^HEAT-PARTIAL|234-246~|9.9e-05^HEAT_2-PARTIAL|239-246~|0.00079^SCD-PARTIAL|240-246~|0.22 PH-PARTIAL|~76-116|1.5e-24^PH_11-PARTIAL|~76-113|4.6e-10^PH_9-PARTIAL|~76-114|1.8e-05^PH_2-PARTIAL|~76-114|1.8e-05^PH_8-PARTIAL|~76-114|7.7e-05^PH_3|79-114|0.00017^PH_11|176-225|2.4^PH|183-221|1.7^PH|284-305|1.4^PH|558-577|3.4 ["GAB2:Oncogene"];["Mitelman","ChimerKB","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","GUO2018CR_TCGA","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr11:0.22Mb] 12 1 12 1 ONLY_REF_SPLICE YES_LDAS 0.1405 GT 1.7968 AG 1.8256 ENST00000695103.1 1-246 ENST00000361507.5 76-2031 chr11|-|[2]77991108-77991299[0]|[2]77994590-77994643[0]<==>chr11|-|[2]78219272-78219415[0]|[2]78220319-78220444[0]|[2]78221677-78221779[2]|[1]78222105-78222195[1]|[0]78223412-78223676[0]|[2]78225108-78225202[1]|[0]78226465-78227051[2]|[1]78250157-78250400[1]|[0]78280601-78280901[0] atggcggcgcaccttaagaagcgggtttatgaggaattcacgaaagtggttcagccacaggaggaaattgctactaagaaactccgactaacaaaaccaagtaaatctgcagcactccacatagatctgtgtaaagctacctccccagcagatgctttgcaatacttgctccagtttgccaggaagcctgtcgaggcggaaagcgtagagggagtagtcaggattctcttggaacattattacaagGCCTGGAAGAAACGCTGGTTTATCCTGCGGAGTGGCCGGATGAGCGGTGACCCAGATGTTCTGGAATACTACAAGAACGATCACTCCAAGAAGCCTCTGCGGATCATCAACCTGAACTTCTGTGAGCAGGTAGATGCAGGCCTGACCTTTAACAAGAAGGAGCTGCAGGATAGTTTTGTGTTTGACATCAAGACCAGTGAACGCACCTTTTACCTGGTGGCTGAGACAGAAGAGGACATGAATAAGTGGGTCCAGAGCATCTGCCAGATCTGTGGCTTCAATCAGGCTGAGGAGAGCACAGACTCCCTGAGAAATGTTTCCTCAGCCGGTCATGGCCCCCGCTCTTCTCCAGCTGAGCTCAGCAGCTCTAGCCAGCACCTTCTCCGAGAGCGCAAGTCCTCAGCCCCATCACACTCCAGCCAGCCAACTCTGTTCACGTTTGAACCCCCTGTGTCAAACCACATGCAGCCCACCTTGTCCACCAGCGCACCTCAGGAGTATCTCTACTTGCACCAGTGCATAAGCCGAAGAGCAGAAAATGCAAGGAGTGCCAGCTTCTCTCAGGGCACCAGAGCCTCTTTTCTCATGAGGAGTGACACAGCTGTACAAAAACTTGCCCAGGGCAATGGACACTGTGTCAACGGGATCAGTGGTCAAGTCCATGGCTTCTATAGCCTTCCCAAGCCGAGCCGGCACAATACAGAATTCAGAGACAGTACCTACGACCTCCCCCGCAGCCTGGCCTCCCATGGCCACACCAAGGGCAGCCTCACAGGCTCCGAGACAGATAATGAGGATGTGTACACCTTCAAGACGCCCAGCAACACCCTGTGCAGGGAGTTCGGGGACCTCCTGGTAGACAATATGGATGTTCCGGCCACCCCACTCTCAGCCTACCAGATCCCTAGGACATTCACTCTGGACAAAAACCACAATGCCATGACAGTGGCCACTCCTGGGGACTCAGCCATAGCTCCCCCACCCCGCCCCCCCAAGCCAAGTCAGGCAGAAACACCTCGATGGGGCAGTCCTCAGCAGAGACCGCCAATCAGTGAAAATAGCAGATCTGTCGCTGCCACCATCCCCAGACGCAACACCCTCCCTGCAATGGACAACAGCCGACTTCACCGAGCTTCTTCCTGTGAGACCTACGAGTACCCACAGCGTGGTGGAGAGAGTGCAGGCCGGTCTGCTGAATCCATGAGTGATGGAGTTGGCTCTTTCCTGCCAGGGAAAATGATTGTGGGCCGATCGGACAGCACCAATTCTGAAGACAACTATGTGCCCATGAATCCAGGTTCTTCCACCCTGTTGGCCATGGAACGAGCAGGTGATAATTCCCAGAGCGTCTACATCCCAATGAGCCCAGGGGCCCATCACTTTGACTCACTTGGCTACCCATCAACAACCCTTCCTGTGCACCGAGGCCCCAGCAGAGGAAGTGAGATTCAGCCACCCCCTGTCAACCGCAACCTCAAACCTGATCGGAAAGCAAAGCCAACACCACTTGACCTGAGGAACAACACCGTCATCGATGAACTCCCCTTCAAGTCACCTATCACCAAGTCTTGGTCTAGGGCCAACCACACCTTCAACTCCAGCTCCTCCCAGTACTGCCGCCCCATCTCCACCCAGAGCATCACCAGCACAGACTCAGGAGACAGCGAAGAGAACTATGTCCCTATGCAAAACCCAGTGTCTGCATCTCCCGTTCCCAGTGGCACGAACAGTCCTGCCCCTAAGAAGAGCACCGGCAGCGTTGATTATCTGGCCCTGGACTTCCAGCCGAGCTCCCCAAGCCCCCACCGCAAGCCATCTACTTCATCCGTCACCTCTGATGAGAAGGTGGACTACGTTCAGGTGGACAAGGAGAAGACCCAGGCCCTGCAGAACACCATGCAGGAGTGGACAGACGTGCGGCAGTCCTCAGAGCCTTCCAAGGGTGCCAAGCTGTGA MAAHLKKRVYEEFTKVVQPQEEIATKKLRLTKPSKSAALHIDLCKATSPADALQYLLQFARKPVEAESVEGVVRILLEHYYKAWKKRWFILRSGRMSGDPDVLEYYKNDHSKKPLRIINLNFCEQVDAGLTFNKKELQDSFVFDIKTSERTFYLVAETEEDMNKWVQSICQICGFNQAEESTDSLRNVSSAGHGPRSSPAELSSSSQHLLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSAPQEYLYLHQCISRRAENARSASFSQGTRASFLMRSDTAVQKLAQGNGHCVNGISGQVHGFYSLPKPSRHNTEFRDSTYDLPRSLASHGHTKGSLTGSETDNEDVYTFKTPSNTLCREFGDLLVDNMDVPATPLSAYQIPRTFTLDKNHNAMTVATPGDSAIAPPPRPPKPSQAETPRWGSPQQRPPISENSRSVAATIPRRNTLPAMDNSRLHRASSCETYEYPQRGGESAGRSAESMSDGVGSFLPGKMIVGRSDSTNSEDNYVPMNPGSSTLLAMERAGDNSQSVYIPMSPGAHHFDSLGYPSTTLPVHRGPSRGSEIQPPPVNRNLKPDRKAKPTPLDLRNNTVIDELPFKSPITKSWSRANHTFNSSSSQYCRPISTQSITSTDSGDSEENYVPMQNPVSASPVPSGTNSPAPKKSTGSVDYLALDFQPSSPSPHRKPSTSSVTSDEKVDYVQVDKEKTQALQNTMQEWTDVRQSSEPSKGAKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact TRUE Breast invasive carcinoma BREAST exact 77690042|77692505 FALSE|FALSE 77991947|77991947 TRUE|TRUE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31582 ARFIP1::FHDC1 ENSG00000164144.16::ENSG00000137460.10 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARFIP1 ENSG00000164144.16 protein_coding + + chr4:152779937-152918463:+ chr4:152829726:+ chr4:153701089-153839615:+ chr4:153750878:+ FHDC1 ENSG00000137460.10 protein_coding + + chr4:152936323-152979671:+ chr4:152964485:+ chr4:153857475-153900823:+ chr4:153885637:+ chr4:152841504,chr4:152841504,chr4:152841502 chr4:152964467,chr4:152964462,chr4:152964457 NA NA chr4:153762656,chr4:153762656,chr4:153762654 chr4:153885619,chr4:153885614,chr4:153885609 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ChimerKB","DepMap2023","Cosmic","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.02Mb];NEIGHBORS[17889] 12 11 12 11 INCL_NON_REF_SPLICE YES_LDAS 0.2486 GT 1.9086 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 152781286|152815795 FALSE|FALSE 152955542|152955542 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31583 EZH2::PSD3 ENSG00000106462.12::ENSG00000156011.19 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1584 FALSE NA FALSE NA EZH2 ENSG00000106462.12 protein_coding - - chr7:148807257-148884321:- chr7:148826469:- chr7:148504349-148581413:- chr7:148523561:- PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:18804898:- chr8:18384813-18942240:- chr8:18662408:- chr7:148825532,chr7:148825539 chr8:18853996,chr8:18854000 NA NA chr7:148522624,chr7:148522631 chr8:18711506,chr8:18711510 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame tRNA_lig_CPD|15-67|0.0074^EZH2_WD-Binding|39-68|1e-21^PRC2_HTH_1|47-74|2.6^PRC2_HTH_1|158-249|3e-35^tRNA_lig_CPD|177-250|0.0022^Ezh2_MCSS|257-309|2.8e-39 none ["EZH2:FoundationOne_panel","EZH2:ArcherDX_panel","EZH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr8] 11 3 11 2.54 ONLY_REF_SPLICE YES_LDAS 0.1464 GT 1.7819 AG 1.8892 ENST00000683744.1 1-892 ENST00000523619.5 1440-2949 chr7|-|[0]148826469-148826632[2]|[1]148827164-148827266[1]|[0]148828740-148828880[1]|[0]148829728-148829848[0]|[2]148832634-148832750[0]|[2]148846470-148846598[0]|[2]148847182-148847298[0]<==>chr8|-|[2]18535743-18535958[0]|[2]18556209-18556352[0]|[2]18572528-18572672[2]|[1]18575128-18575285[0]|[2]18600364-18600434[1]|[0]18632613-18632806[2]|[1]18655642-18655685[0]|[2]18765449-18765538[0]|[2]18799295-18799353[1]|[0]18801270-18801382[2]|[1]18804522-18804602[2]|[1]18804704-18804898[2] atgggccagactgggaagaaatctgagaagggaccagtttgttggcggaagcgtgtaaaatcagagtacatgcgactgagacagctcaagaggttcagacgagctgatgaagtaaagagtatgtttagttccaatcgtcagaaaattttggaaagaacggaaatcttaaaccaagaatggaaacagcgaaggatacagcctgtgcacatcctgacttctgtgagctcattgcgcgggactagggagtgttcggtgaccagtgacttggattttccaacacaagtcatcccattaaagactctgaatgcagttgcttcagtacccataatgtattcttggtctcccctacagcagaattttatggtggaagatgaaactgttttacataacattccttatatgggagatgaagttttagatcaggatggtactttcattgaagaactaataaaaaattatgatgggaaagtacacggggatagagaatgtgggtttataaatgatgaaatttttgtggagttggtgaatgcccttggtcaatataatgatgatgacgatgatgatgatggagacgatcctgaagaaagagaagaaaagcagaaagatctggaggatcaccgagatgataaagaaagccgcccacctcggaaatttccttctgataaaatttttgaagccatttcctcaatgtttccagataagggcacagcagaagaactaaaggaaaaatataaagaactcaccgaacagcagctcccaggcgcacttcctcctgaatgtacccccaacatagatggaccaaatgctaaatctgttcagagagagcaaagcttacactcctttcatacgcttttctgtaggcgatgttttaaatatgactgcttcctacatcCAATGCTGGGGTGAAAACAACACGGCTAGAAGCTCATTCTGAAATGGGGAGCACTGAAATTTTGGAAAAGGAGACCCCAGAAAATCTCAGTAATGGTACCAGCAGCAATGTGGAAGCAGCCAAAAGGTTGGCCAAACGCCTTTATCAGCTGGACAGATTCAAAAGATCAGATGTTGCAAAACACCTTGGCAAGAACAACGAATTTAGCAAACTAGTTGCAGAAGAATATCTGAAGTTTTTTGATTTTACAGGAATGACGCTGGATCAGTCACTCAGGTATTTCTTTAAAGCATTCTCTCTTGTGGGAGAAACTCAAGAACGAGAGAGAGTTTTAATACACTTCTCCAATAGATATTTTTATTGTAACCCAGATACCATTGCTTCACAAGATGGAGTCCATTGCCTTACCTGTGCAATAATGCTTCTTAATACCGATCTACATGGCCACAATATTGGAAAGAAGATGACCTGTCAGGAGTTCATTGCAAATCTGCAAGGGGTAAATGAGGGTGTTGATTTCTCCAAGGATCTGCTGAAAGCTCTGTACAACTCAATCAAGAATGAGAAGCTTGAATGGGCAGTAGATGATGAAGAGAAAAAAAAGTCTCCCTCAGAAAGTACTGAGGAGAAAGCTAACGGAACACATCCAAAGACCATCAGTCGTATTGGAAGTACTACTAACCCATTTTTGGACATTCCTCATGATCCAAATGCTGCTGTGTACAAAAGTGGATTCTTGGCTCGGAAAATTCATGCAGATATGGATGGAAAGAAGACTCCAAGAGGAAAACGAGGATGGAAAACCTTTTATGCTGTACTGAAGGGAACAGTTCTTTACTTGCAAAAGGATGAATACAAGCCAGAAAAGGCCTTGTCTGAAGAGGACTTGAAAAACGCTGTGAGTGTGCACCACGCATTGGCATCCAAGGCCACGGACTATGAGAAGAAACCAAACGTGTTTAAACTTAAAACTGCCGACTGGAGGGTCTTGCTTTTTCAAACTCAGAGCCCAGAGGAAATGCAAGGGTGGATAAACAAAATCAATTGTGTGGCAGCTGTATTTTCTGCACCACCATTTCCAGCAGCAATCGGCTCTCAGAAGAAGTTTAGCCGCCCACTTCTGCCTGCCACTACAACAAAACTGTCTCAGGAGGAGCAACTGAAGTCACATGAAAGTAAGCTGAAGCAGATCACCACCGAGCTGGCCGAGCACCGCTCATATCCCCCCGACAAGAAGGTCAAAGCCAAGGACGTCGATGAGTACAAACTGAAAGACCACTATCTGGAGTTTGAGAAAACCCGCTATGAAATGTATGTCAGCATTCTCAAGGAAGGAGGCAAAGAGCTACTGAGTAACGATGAAAGCGAGGCTGCAGGACTGAAGAAGTCGCACTCGAGTCCTTCGCTGAACCCGGATACTTCTCCAATCACTGCCAAAGTCAAGCGTAACGTGTCAGAGAGGAAGGATCACCGACCTGAAACACCAAGCATTAAGCAAAAAGTTACTTAG MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPEEREEKQKDLEDHRDDKESRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPMLG*KQHG*KLILKWGALKFWKRRPQKISVMVPAAMWKQPKGWPNAFISWTDSKDQMLQNTLARTTNLAN*LQKNI*SFLILQE*RWISHSGISLKHSLLWEKLKNEREF*YTSPIDIFIVTQIPLLHKMESIALPVQ*CFLIPIYMATILERR*PVRSSLQICKG*MRVLISPRIC*KLCTTQSRMRSLNGQ*MMKRKKSLPQKVLRRKLTEHIQRPSVVLEVLLTHFWTFLMIQMLLCTKVDSWLGKFMQIWMERRLQEENEDGKPFMLY*REQFFTCKRMNTSQKRPCLKRT*KTL*VCTTHWHPRPRTMRRNQTCLNLKLPTGGSCFFKLRAQRKCKGG*TKSIVWQLYFLHHHFQQQSALRRSLAAHFCLPLQQNCLRRSN*SHMKVS*SRSPPSWPSTAHIPPTRRSKPRTSMSTN*KTTIWSLRKPAMKCMSAFSRKEAKSY*VTMKARLQD*RSRTRVLR*TRILLQSLPKSSVTCQRGRITDLKHQALSKKLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE enhancer of zeste homolog 2 1 Yes DLBCL leukaemia_lymphoma oncogene, TSG missense FALSE NA NA NA NA NA NA NA NA NA 31585 RNF19B::AK2 ENSG00000116514.17::ENSG00000004455.18 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1593 FALSE NA FALSE NA RNF19B ENSG00000116514.17 protein_coding - - chr1:32936445-32964809:- chr1:32964051:- chr1:33402046-33430410:- chr1:33429652:- AK2 ENSG00000004455.18 protein_coding - - chr1:33007986-33080996:- chr1:33024567:- chr1:33473587-33546597:- chr1:33490168:- chr1:32963066,chr1:32963071 chr1:33025305,chr1:33025307 NA NA chr1:33428667,chr1:33428672 chr1:33490906,chr1:33490908 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-RING_5|118-167|2.6e-07^zf-RING_2|118-166|5.3e-07^zf-C3HC4|119-166|1.2e-07^IBR|131-168|0.0035^IBR|187-251|1.1e-17^zf-RING_2|194-206|3.9^zf-C3HC4|220-251|4^zf-RING_2|227-251|1.7^zf-RING_5|228-242|4^IBR|282-322|8.5e-11^zf-C3HC4|287-321|2.8^zf-RING_5|287-313|2^zf-RING_2|306-321|4 ADK-PARTIAL|~94-205|5.5e-65^AAA_17-PARTIAL|~94-152|8.9e-27^AAA_33-PARTIAL|~94-142|7.9e-08^AAA_18-PARTIAL|~94-143|6.5e-06^ADK_lid|142-177|3.4e-19^AAA_33|192-213|2 ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.04Mb];LOCAL_REARRANGEMENT:-:[43255] 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.1405 GT 1.5628 AG 1.9656 ENST00000373456.11 1-635 ENST00000672715.1 94-720 chr1|-|[1]32964051-32964685[0]<==>chr1|-|[2]33013181-33013402[0]|[2]33014522-33014594[2]|[1]33021367-33021461[0]|[2]33021593-33021703[0]|[2]33024442-33024567[0] atgggctccgagaaggactccgagtcgccgcgctccacatcgctacatgcggccgcacccgaccctaagtgccgcagcggcggccggcgccggcgcctcaccttgcacagcgtcttctctgcctcggcccgcggccgccgcgcccgggccaagccgcaggccgagccgccgcccccggctgcgcagccgccgcccgccccggcccctgccgcggcccagggcccgccgcccgaggcgctgcccgccgagccggccgccgaggccgaggcggaggccgcggcggcggcggcggagcctgggttcgacgatgaggaggcggcggagggcggtggcccgggcgcggaggaggtggagtgtccgctgtgcctggtgcggctgccgcctgagcgggccccgcgcctcctcagctgtccgcaccgctcgtgccgggactgcctccgccactacctgcgcctggagataagcgagagcagggtgcccatcagctgccccgagtgcagcgagcgactcaacccgcacgacatccgcttgctgctcgccgacccgccgcttatgcacaagtacgaggagttcatgctgcgccgctacctagcctcggaccccgactgccgctggtgcccggccccggactgcggGCACCCAGATTGGCTGAAAACTTCTGTGTCTGCCATTTAGCTACTGGGGACATGCTGAGGGCCATGGTGGCTTCTGGCTCAGAGCTAGGAAAAAAGCTGAAGGCAACTATGGATGCTGGGAAACTGGTGAGTGATGAAATGGTAGTGGAGCTCATTGAGAAGAATTTGGAGACCCCCTTGTGCAAAAATGGTTTTCTTCTGGATGGCTTCCCTCGGACTGTGAGGCAGGCAGAAATGCTCGATGACCTCATGGAGAAGAGGAAAGAGAAGCTTGATTCTGTGATTGAATTCAGCATCCCAGACTCTCTGCTGATCCGAAGAATCACAGGAAGGCTGATTCACCCCAAGAGTGGCCGTTCCTACCACGAGGAGTTCAACCCTCCAAAAGAGCCCATGAAAGATGACATCACCGGGGAACCCTTGATCCGTCGATCAGATGATAATGAAAAGGCCTTGAAAATCCGCCTGCAAGCCTACCACACTCAAACCACCCCACTCATAGAGTACTACAGGAAACGGGGGATCCACTCCGCCATCGATGCATCCCAGACCCCCGATGTCGTGTTCGCAAGCATCCTAGCAGCCTTCTCCAAAGCCACATGTAAAGACTTGGTTATGTTTATCTAA MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGHPDWLKTSVSAI*LLGTC*GPWWLLAQS*EKS*RQLWMLGNW*VMKW*WSSLRRIWRPPCAKMVFFWMASLGL*GRQKCSMTSWRRGKRSLIL*LNSASQTLC*SEESQEG*FTPRVAVPTTRSSTLQKSP*KMTSPGNP*SVDQMIMKRP*KSACKPTTLKPPHS*STTGNGGSTPPSMHPRPPMSCSQAS*QPSPKPHVKTWLCLS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31589 IL6R::ATP8B2 ENSG00000160712.13::ENSG00000143515.20 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1587 FALSE NA FALSE NA IL6R ENSG00000160712.13 protein_coding + + chr1:154405193-154469450:+ chr1:154448171:+ chr1:154377669-154441926:+ chr1:154420647:+ ATP8B2 ENSG00000143515.20 protein_coding + + chr1:154325525-154351304:+ chr1:154330396:+ chr1:154298001-154323780:+ chr1:154302872:+ chr1:154448876,chr1:154448877 chr1:154328364,chr1:154328362 NA NA chr1:154421352,chr1:154421353 chr1:154300840,chr1:154300838 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ig|35-97|1.9e-10^V-set|36-66|0.0077^Ig_5|37-106|5.4e-05^Ig_3|38-96|2.9e-09^I-set|39-97|4.4e-05^Ig_2|40-97|2.4e-07^V-set|81-97|0.013^IL6Ra-bind|118-213|9.5e-26^V-set|119-204|0.31^fn3|217-304|5.3e-07^Ig_3|221-243|0.76^Ig_2|235-246|3.3 E1-E2_ATPase|145-342|4.8e-09^PhoLip_ATPase_C|315-378|0.74^Hydrolase|422-434|0.15^Cation_ATPase|506-605|1.4e-17^Hydrolase|632-720|1.9e-06^Cation_ATPase|701-715|2.5^Hydrolase|819-858|1.7e-05^Hydrolase_3|835-863|3.2e-07^PhoLip_ATPase_C|873-1126|1.1e-93^E1-E2_ATPase|1019-1075|0.56^DUF3899|1052-1088|2.1e-05^E1-E2_ATPase|1095-1118|2.6 ["ChimerKB","DepMap2023","Cosmic","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.05Mb];LOCAL_REARRANGEMENT:+:[53886] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1298 GT 1.7232 AG 0.9968 ENST00000344086.8 1-996 ENST00000672630.1 131-3672 chr1|+|[0]154405630-154405714[0]|[1]154429196-154429444[0]|[1]154430483-154430606[1]|[2]154434519-154434700[0]|[1]154434990-154435156[2]|[0]154435969-154436110[0]|[1]154448125-154448171[2]<==>chr1|+|[1]154330396-154330454[2]|[0]154330815-154330928[2]|[0]154331048-154331146[2]|[0]154331444-154331505[1]|[2]154331606-154331678[2]|[0]154331954-154332024[1]|[2]154332618-154332697[0]|[1]154334107-154334265[0]|[1]154334503-154334591[2]|[0]154337348-154337544[1]|[2]154340854-154341062[0]|[1]154342480-154342523[2]|[0]154342796-154342961[0]|[1]154343113-154343301[0]|[1]154343453-154343568[2]|[0]154343893-154344057[2]|[0]154344143-154344254[0]|[1]154344395-154344500[1]|[2]154344641-154344785[2]|[0]154344971-154345154[0]|[1]154345322-154345545[2]|[0]154345800-154345883[2]|[0]154346231-154346476[2]|[0]154346620-154346758[0]|[1]154348408-154348538[2]|[0]154348840-154349118[2] atgctggccgtcggctgcgcgctgctggctgccctgctggccgcgccgggagcggcgctggccccaaggcgctgccctgcgcaggaggtggcgagaggcgtgctgaccagtctgccaggagacagcgtgactctgacctgcccgggggtagagccggaagacaatgccactgttcactgggtgctcaggaagccggctgcaggctcccaccccagcagatgggctggcatgggaaggaggctgctgctgaggtcggtgcagctccacgactctggaaactattcatgctaccgggccggccgcccagctgggactgtgcacttgctggtggatgttccccccgaggagccccagctctcctgcttccggaagagccccctcagcaatgttgtttgtgagtggggtcctcggagcaccccatccctgacgacaaaggctgtgctcttggtgaggaagtttcagaacagtccggccgaagacttccaggagccgtgccagtattcccaggagtcccagaagttctcctgccagttagcagtcccggagggagacagctctttctacatagtgtccatgtgcgtcgccagtagtgtcgggagcaagttcagcaaaactcaaacctttcagggttgtggaatcttgcagcctgatccgcctgccaacatcacagtcactgccgtggccagaaacccccgctggctcagtgtcacctggcaagacccccactcctggaactcatctttctacagactacggtttgagctcagatatcgggctgaacggtcaaagacattcacaacatggatggtcaaggacctccagcatcactgtgtcatccacgacgcctggagcggcctgaggcacgtggtgcagcttcgtgcccaggaggagttcgggcaaggcgagtggagcgagtggagcccggaggccatgggcacgccttggacagaatccaggagtcctccagctgagaacgaggtgtccacccccatgcagAAGAAGAAAGGAGGGCGCGGGCTAATGACCGAGAATACAATGAGAAATTCCAGTATGCGAGTAACTGCATCAAGACCTCCAAGTACAATATTCTCACCTTCCTGCCTGTCAACCTCTTTGAGCAGTTCCAGGAAGTTGCCAACACTTACTTCCTGTTCCTCCTCATTCTGCAGTTGATCCCCCAGATCTCTTCCCTGTCCTGGTTCACCACCATTGTGCCTTTGGTTCTTGTCCTCACCATCACAGCTGTTAAAGATGCCACTGATGACTATTTCCGCCACAAGAGCGATAACCAGGTGAATAACCGCCAGTCTCAGGTGCTGATCAATGGAATCCTCCAGCAGGAGCAGTGGATGAATGTCTGTGTTGGTGATATTATCAAGCTAGAAAATAACCAGTTTGTGGCGGCGGATCTCCTCCTCCTTTCCAGCAGTGAGCCCCATGGGCTGTGTTACATAGAGACAGCAGAACTTGATGGCGAGACCAACATGAAAGTACGTCAGGCGATTCCAGTCACCTCAGAATTGGGAGACATCAGTAAGCTTGCCAAGTTTGACGGTGAAGTGATCTGTGAACCTCCCAACAACAAACTGGACAAATTCAGCGGAACCCTCTACTGGAAGGAAAATAAGTTCCCTCTGAGCAACCAGAACATGCTGCTGCGGGGCTGTGTGCTGCGAAACACCGAGTGGTGCTTCGGGCTGGTCATCTTTGCAGGTCCCGACACTAAGCTGATGCAAAACAGCGGCAGAACAAAGTTCAAAAGAACGAGTATCGATCGCCTAATGAATACCCTGGTGCTCTGGATTTTTGGATTCCTGGTTTGCATGGGGGTGATCCTGGCCATTGGCAATGCCATCTGGGAGCACGAGGTGGGGATGCGTTTCCAGGTCTACCTGCCGTGGGATGAGGCAGTGGACAGTGCCTTCTTCTCTGGCTTCCTCTCCTTCTGGTCCTACATCATCATCCTCAACACCGTTGTGCCCATTTCACTCTATGTCAGTGTGGAGGTCATCCGTCTGGGCCACAGCTACTTCATCAACTGGGATAAGAAGATGTTCTGCATGAAGAAGCGGACGCCTGCAGAAGCCCGCACCACCACCCTAAACGAGGAGCTGGGCCAGGTGGAGTACATCTTCTCCGACAAGACGGGCACCCTCACCCAGAACATCATGGTTTTCAACAAGTGCTCCATCAATGGCCACAGCTATGGTGATGTGTTTGACGTCCTGGGACACAAAGCTGAATTGGGAGAGAGGCCTGAACCTGTTGACTTCTCCTTCAATCCTCTGGCTGACAAGAAGTTCTTATTTTGGGACCCCAGCCTGCTGGAGGCTGTCAAGATCGGGGACCCCCACACGCATGAGTTCTTCCGCCTCCTTTCCCTGTGTCATACTGTCATGTCAGAAGAAAAGAACGAAGGAGAGCTGTACTACAAAGCTCAGTCCCCAGATGAGGGGGCCCTGGTCACCGCAGCCAGGAACTTTGGTTTTGTTTTCCGCTCTCGCACCCCCAAAACAATCACCGTCCATGAGATGGGCACAGCCATCACCTACCAGCTGCTGGCCATCCTGGACTTCAACAACATCCGCAAGCGGATGTCGGTCATAGTGCGGAATCCAGAGGGGAAGATCCGACTCTACTGCAAAGGGGCTGACACTATCCTACTGGACAGACTGCACCACTCCACTCAAGAGCTGCTCAACACCACCATGGACCACCTTAATGAGTACGCAGGGGAAGGGCTGAGGACCCTGGTGCTGGCCTACAAGGATCTGGATGAAGAGTACTACGAGGAGTGGGCTGAGCGACGCCTCCAGGCCAGCCTGGCCCAGGACAGCCGGGAGGACAGGCTGGCTAGCATCTATGAGGAGGTTGAGAACAACATGATGCTGCTGGGTGCAACGGCCATTGAGGACAAACTTCAGCAAGGGGTTCCAGAGACCATTGCCCTCCTGACACTGGCCAACATCAAGATTTGGGTGCTAACCGGAGACAAGCAAGAGACGGCTGTGAACATCGGCTATTCCTGCAAGATGCTGACGGATGACATGACTGAGGTTTTCATAGTCACTGGCCATACTGTCCTGGAGGTGCGGGAGGAGCTCAGGAAAGCCCGGGAGAAGATGATGGACTCATCCCGCTCCGTAGGCAACGGCTTCACCTATCAGGACAAGCTTTCTTCTTCCAAGCTAACTTCTGTCCTGGAGGCCGTTGCTGGGGAGTACGCCCTGGTCATAAATGGTCACAGCCTGGCCCACGCACTGGAGGCAGACATGGAGCTGGAGTTTCTGGAGACAGCGTGTGCCTGCAAAGCTGTCATCTGCTGCCGGGTGACCCCCTTGCAGAAGGCACAGGTGGTAGAACTGGTCAAGAAGTACAAGAAGGCTGTGACGCTTGCCATTGGAGACGGAGCCAATGATGTCAGCATGATCAAAACGGCTCACATTGGTGTGGGGATCAGTGGGCAGGAAGGGATCCAGGCTGTCTTGGCCTCCGATTACTCCTTCTCCCAGTTCAAGTTCCTGCAGCGCCTCCTGCTGGTGCATGGGCGCTGGTCCTACCTGCGAATGTGCAAGTTTCTTTGCTATTTCTTCTACAAAAACTTTGCTTTCACCATGGTCCACTTCTGGTTTGGCTTCTTCTGTGGCTTCTCAGCCCAGACCGTCTATGACCAGTATTTCATCACCCTGTATAACATCGTGTACACCTCCCTGCCAGTCCTGGCTATGGGGGTCTTTGATCAGGATGTCCCCGAGCAGCGGAGCATGGAGTACCCTAAGCTGTATGAGCCGGGCCAGCTGAACCTTCTCTTCAACAAGCGGGAGTTCTTCATCTGCATCGCCCAGGGCATCTACACCTCCGTGCTCATGTTCTTCATTCCCTATGGGGTGTTTGCTGATGCCACCCGGGATGATGGCACTCAGCTGGCTGACTACCAGTCCTTTGCAGTCACTGTGGCCACATCCTTGGTCATTGTGGTTAGCGTGCAGATTGGGCTCGACACAGGCTACTGGACGGCCATCAACCACTTCTTCATCTGGGGAAGCCTTGCTGTTTACTTTGCCATCCTCTTTGCCATGCACAGCAATGGGCTCTTCGACATGTTTCCCAACCAGTTCCGGTTTGTGGGGAATGCCCAGAACACCTTGGCCCAGCCCACGGTGTGGCTGACCATTGTGCTCACCACAGTCGTCTGCATCATGCCCGTGGTTGCCTTCCGATTCCTCAGGCTCAACCTGAAGCCGGATCTCTCCGACACGGTCCGCTACACACAGCTCGTGAGGAAGAAGCAGAAGGCCCAGCACCGCTGCATGCGGCGGGTTGGCCGCACTGGCTCCCGGCGCTCCGGCTATGCCTTCTCCCATCAGGAGGGCTTCGGGGAGCTCATCATGTCTGGCAAGAACATGCGGCTGAGCTCTCTCGCGCTCTCCAGCTTCACCACCCGCTCCAGCTCCAGCTGGATTGAGAGCCTGCGCAGGAAGAAGAGTGACAGTGCCAGTAGCCCCAGTGGCGGTGCCGACAAGCCCCTCAAGGGCTGA MLAVGCALLAALLAAPGAALAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQKKKGGRGLMTENTMRNSSMRVTASRPPSTIFSPSCLSTSLSSSRKLPTLTSCSSSFCS*SPRSLPCPGSPPLCLWFLSSPSQLLKMPLMTISATRAITR*ITASLRC*SMESSSRSSG*MSVLVILSS*KITSLWRRISSSFPAVSPMGCVT*RQQNLMARPT*KYVRRFQSPQNWETSVSLPSLTVK*SVNLPTTNWTNSAEPSTGRKISSL*ATRTCCCGAVCCETPSGASGWSSLQVPTLS*CKTAAEQSSKERVSIA**IPWCSGFLDSWFAWG*SWPLAMPSGSTRWGCVSRSTCRGMRQWTVPSSLASSPSGPTSSSSTPLCPFHSMSVWRSSVWATATSSTGIRRCSA*RSGRLQKPAPPP*TRSWARWSTSSPTRRAPSPRTSWFSTSAPSMATAMVMCLTSWDTKLNWERGLNLLTSPSILWLTRSSYFGTPACWRLSRSGTPTRMSSSASFPCVILSCQKKRTKESCTTKLSPQMRGPWSPQPGTLVLFSALAPPKQSPSMRWAQPSPTSCWPSWTSTTSASGCRS*CGIQRGRSDSTAKGLTLSYWTDCTTPLKSCSTPPWTTLMSTQGKG*GPWCWPTRIWMKSTTRSGLSDASRPAWPRTAGRTGWLASMRRLRTT*CCWVQRPLRTNFSKGFQRPLPS*HWPTSRFGC*PETSKRRL*TSAIPARC*RMT*LRFS*SLAILSWRCGRSSGKPGRR*WTHPAP*ATASPIRTSFLLPS*LLSWRPLLGSTPWS*MVTAWPTHWRQTWSWSFWRQRVPAKLSSAAG*PPCRRHRW*NWSRSTRRL*RLPLETEPMMSA*SKRLTLVWGSVGRKGSRLSWPPITPSPSSSSCSASCWCMGAGPTCECASFFAISSTKTLLSPWSTSGLASSVASQPRPSMTSISSPCITSCTPPCQSWLWGSLIRMSPSSGAWSTLSCMSRAS*TFSSTSGSSSSASPRASTPPCSCSSFPMGCLLMPPGMMALSWLTTSPLQSLWPHPWSLWLACRLGSTQATGRPSTTSSSGEALLFTLPSSLPCTAMGSSTCFPTSSGLWGMPRTPWPSPRCG*PLCSPQSSASCPWLPSDSSGST*SRISPTRSATHSS*GRSRRPSTAACGGLAALAPGAPAMPSPIRRASGSSSCLARTCG*ALSRSPASPPAPAPAGLRACAGRRVTVPVAPVAVPTSPSRA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31593 PRMT7::SLC7A6 ENSG00000132600.18::ENSG00000103064.15 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 2838 TRUE 1079 PRMT7 ENSG00000132600.18 protein_coding + + chr16:68310951-68360852:+ chr16:68324832:+ chr16:68344854-68394755:+ chr16:68358735:+ SLC7A6 ENSG00000103064.15 protein_coding + + chr16:68264516-68301823:+ chr16:68273818:+ chr16:68298419-68335726:+ chr16:68307721:+ chr16:68326458,chr16:68326405,chr16:68326454 chr16:68270282,chr16:68269925,chr16:68270275 NA NA chr16:68360361,chr16:68360308,chr16:68360357 chr16:68304185,chr16:68303828,chr16:68304178 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.01Mb];LOCAL_REARRANGEMENT:+:[9151] 5 14 5 5.2 ONLY_REF_SPLICE YES_LDAS 0.1103 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31594 PRLR::AGXT2 ENSG00000113494.17::ENSG00000113492.14 HCC2157 SRR8615891 SRR8639159 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 1570 TRUE 2835 TRUE 1076 PRLR ENSG00000113494.17 protein_coding - - chr5:35048756-35230487:- chr5:35195551:- chr5:35048861-35230589:- chr5:35195653:- AGXT2 ENSG00000113492.14 protein_coding - - chr5:34998101-35048135:- chr5:35026510:- chr5:34998206-35048240:- chr5:35026615:- chr5:35174416,chr5:35174418 chr5:35027784,chr5:35027784 NA NA chr5:35174518,chr5:35174520 chr5:35027889,chr5:35027889 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRLR:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.00Mb];NEIGHBORS[621] 5 57 5 17.1 ONLY_REF_SPLICE YES_LDAS 0.239 GT 1.585 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31597 MTREX::SHISAL2B ENSG00000039123.16::ENSG00000145642.12 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 1594 FALSE NA FALSE NA MTREX ENSG00000039123.16 protein_coding + + chr5:55307989-55425579:+ chr5:55358698:+ chr5:54603817-54721407:+ chr5:54654526:+ SHISAL2B ENSG00000145642.12 protein_coding + + chr5:64690442-64718190:+ chr5:64717889:+ chr5:63986269-64014017:+ chr5:64013716:+ chr5:55366335 chr5:64706018 NA NA chr5:54662163 chr5:64001845 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DEAD|143-290|4e-29^ResIII|144-286|7.7e-10^nSTAND3|145-194|6.9e-06^AAA_22|153-268|0.0002^Helicase_C|377-406|0.063^Helicase_C|449-528|4.2e-10^MTR4-like_stalk|582-645|6.8e-24^MTR4_beta-barrel|646-841|4.6e-72^MTR4-like_stalk|789-829|1.5^DSHCT|868-1037|2e-67^AAA_22|995-1013|4.2^DEAD|1000-1023|1.3 none none 16 2 16 2 ONLY_REF_SPLICE YES_LDAS 0.2124 GT 1.6402 AG 1.7968 ENST00000230640.10 1-1659 ENST00000389074.6 350-483 chr5|+|[0]55308014-55308147[1]|[2]55322327-55322464[1]|[2]55324132-55324198[2]|[0]55327716-55327778[2]|[0]55328699-55328811[1]|[2]55340010-55340184[2]|[0]55341681-55341771[0]|[1]55343331-55343455[2]|[0]55344522-55344620[2]|[0]55345094-55345196[0]|[1]55347013-55347144[0]|[1]55349573-55349652[2]|[0]55350919-55351029[2]|[0]55353168-55353269[2]|[0]55358573-55358698[2]<==>chr5|+|[1]64717889-64718022[2] atggcggacgcattcggagatgagctgttcagcgtgttcgagggcgactcgaccactgcggcgggaaccaaaaaagacaaggaaaaggacaaggggaaatggaaggggcctccagggtctgcagacaaggcagggaaacgttttgatggtaaattacaatcagaatcaactaataatggaaaaaataagagagatgtagatttcgaaggtacagatgaacccatttttggaaagaagcccaggatagaagagtcaataactgaagacttaagtttggcagacctgatgcccagagtcaaggtacaatcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagaagaggattatttaccacttaaaccacgagttggaaaagctgctaaggaatacccgttcattcttgatgcttttcaaagagaggccattcagtgtgttgacaataatcagtctgttctagtatctgcacatacctcagcgggaaaaacagtatgcgccgagtatgccattgcattggccttaagggaaaagcagcgtgtaatatttaccagcccaattaaggctctgagtaaccaaaaataccgtgaaatgtatgaagaatttcaagatgttggtttgatgactggtgatgttactattaatcctacggcatcttgtcttgttatgaccacagagattttgagaagtatgctttacagaggttccgaagttatgagagaagttgcttgggttatatttgatgaaattcattatatgagagattcagaacgtggtgtagtatgggaagaaactattattttgcttcctgataacgtccactatgtctttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacataaacagccttgtcatgttatttacacagattatcggcccactccattgcaacactacatttttccagcagggggagatggcctgcatcttgtggttgatgaaaatggtgacttcagagaagataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggccaaaggagaccagaaagggcggaaaggaggaacaaaaggaccatcaaatgttttcaaaattgtgaagatgattatggaaagaaatttccaacctgtgattattttcagttttagtaagaaagattgtgaagcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaagtattcagtaatgcaattgattgcttatccgatgaagataaaaaactccctcaggtagaacatgtacttcctcttttgaagaggggaattggtattcaccatggtggtttacttcctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccacggagacctttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccgcaaatttgatgggaaggatttccgatggatttcttctggtgaatacattcagatgtctggtcgtgctggaaggagaggaatggatgatagaggaattgtaattcttatggtagatgaaaagatgagcccaacaattggaaaacaattacttaagGCAAGTCAAATGGAAAAACCAAAGCCCTCAATTCAAATGCAGCATCAAATGCAACAAATGAAACATACTATGAAGCTGATGATATAATTCAAGAAAAAACAATGGATGCAACACAAATCCACATTGCTTATTAA MADAFGDELFSVFEGDSTTAAGTKKDKEKDKGKWKGPPGSADKAGKRFDGKLQSESTNNGKNKRDVDFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKASQMEKPKPSIQMQHQMQQMKHTMKLMI*FKKKQWMQHKSTLLI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31598 ENSG00000289985::MTREX ENSG00000289985.1::ENSG00000039123.16 SW579 SRR8615892 SRR8670670 THYROID carcinoma (anaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 1595 FALSE NA FALSE NA ENSG00000289985 ENSG00000289985.1 lncRNA - - chr19:11676606-11694991:- chr19:11694799:- chr19:11787421-11805806:- chr19:11805614:- MTREX ENSG00000039123.16 protein_coding + + chr5:55307989-55425579:+ chr5:55324132:+ chr5:54603817-54721407:+ chr5:54619960:+ chr19:11694456,chr19:11694458 chr5:55323285,chr5:55323283 NA NA chr19:11805271,chr19:11805273 chr5:54619113,chr5:54619111 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 13 3 13 3 ONLY_REF_SPLICE YES_LDAS 0.1888 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31603 NFIX::GCDH ENSG00000008441.19::ENSG00000105607.13 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NFIX ENSG00000008441.19 protein_coding + + chr19:12995475-13098796:+ chr19:13025552:+ chr19:13106289-13209610:+ chr19:13136366:+ GCDH ENSG00000105607.13 protein_coding + + chr19:12891160-12914207:+ chr19:12913995:+ chr19:13001974-13025021:+ chr19:13024809:+ chr19:13028102,chr19:13028097,chr19:13028097 chr19:12907108,chr19:12907100,chr19:12907101 NA NA chr19:13138916,chr19:13138911,chr19:13138911 chr19:13017922,chr19:13017914,chr19:13017915 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NfI_DNAbd_pre-N|18-54|5.4e-29^MH1|77-177|3.7e-14^CTF_NFI|153-181|0.94^CTF_NFI|221-503|3.3e-119 none ["NFIX:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.08Mb];LOCAL_REARRANGEMENT:+:[81401] 94 49 94 49 ONLY_REF_SPLICE YES_LDAS 1.8601 GT 1.8892 AG 1.9219 ENST00000676441.1 1-583 ENST00000591050.1 211-308 chr19|+|[0]13024634-13024684[2]|[0]13025021-13025552[0]<==>chr19|+|[1]12913995-12914092[2] atggagatgtcatgggcgcgacagagcctggcggggataccagcagcgtgtgatgagttccacccgttcatcgaggcactgctgcctcacgtccgcgctttctcctacacctggttcaacctgcaggcgcggaagcgcaagtacttcaagaagcatgaaaagcggatgtcgaaggacgaggagcgggcggtgaaggacgagctgctgggcgagaagcccgagatcaagcagaagtgggcatcccggctgctggccaagctgcgcaaggacatccggcccgagttccgcgaggacttcgtgctgaccatcacgggcaagaagcccccctgctgcgtgctctccaaccccgaccagaagggcaagatccggcggattgactgcctgcgccaggctgacaaggtgtggcggctggacctggtcatggtgattttgtttaaggggatccccctggaaagtactgatggggagcggctctacaagtcgcctcagtgctcgaaccccggcctgtgcgtccagccacatcacattggagtcacaatcaaagaactggatctttatctggcttactttgtccacactccggGTGAGCTCATTCATTCCACAGCTGCTGCTGAAACAATGACTCCCACAGAACCATCTCCAGACCCTCACCCCACCCCGAGTTCCGGGTCAGAAAGTTGA MEMSWARQSLAGIPAACDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLYKSPQCSNPGLCVQPHHIGVTIKELDLYLAYFVHTPGELIHSTAAAETMTPTEPSPDPHPTPSSGSES* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Lung squamous cell carcinoma LUNG,LUNG exact 13136366|13136366,13136366 TRUE|TRUE,TRUE 13002930|13004297,13002085 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31604 TESC::FBXO21 ENSG00000088992.18::ENSG00000135108.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1596 TRUE 2880 TRUE 1101 TESC ENSG00000088992.18 protein_coding - - chr12:117038923-117099479:- chr12:117056806:- chr12:117476728-117537284:- chr12:117494611:- FBXO21 ENSG00000135108.16 protein_coding - - chr12:117141991-117190470:- chr12:117177641:- chr12:117579796-117628275:- chr12:117615446:- chr12:117053079 chr12:117185880 NA NA chr12:117490884 chr12:117623685 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame M16C_assoc|9-62|3.4e-06 YccV-like-PARTIAL|~471-484|0.81^YccV-like|501-592|7.1e-35 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.04Mb];LOCAL_REARRANGEMENT:-:[42509] 61 40 61 38.96 ONLY_REF_SPLICE YES_LDAS 1.3003 GT 1.9329 AG 1.9656 ENST00000462502.5 1-209 ENST00000330622.9 471-1887 chr12|-|[1]117056806-117056886[2]|[1]117075271-117075340[1]|[0]117099225-117099282[0]<==>chr12|-|[2]117146087-117146277[1]|[0]117155791-117155948[2]|[1]117157873-117158084[0]|[2]117165485-117165617[2]|[1]117166898-117167077[2]|[1]117172471-117172607[0]|[2]117174205-117174341[1]|[0]117174651-117174797[1]|[0]117177520-117177641[2] atgggcgctgcccactccgcgtctgaggaggtgcgggagctcgagggcaagaccggcttctcatcggatcagatcgagcagctccatcggagatttaagcagctgagtggagatcagcctaccattcgcaaggagaacttcaacaatgtcccggacctggagctcaaccccatccgatccaaaattgttcgtgccttcttcgacaacagAAAAGCTTTGACCTGGAAATACTACGCAAAAAAAATTCTTTACTACCTGCGGCAACAGAAGATCTTAAATAATCTTAAGGCCTTTCTTCAGCAGCCAGATGACTATGAGTCGTATCTTGAAGGTGCTGTATATATTGACCAGTACTGCAATCCTCTCTCCGACATCAGCCTCAAAGACATCCAGGCCCAAATTGACAGCATCGTGGAGCTTGTTTGCAAAACCCTTCGGGGCATAAACAGTCGCCACCCCAGCTTGGCCTTCAAGGCAGGTGAATCATCCATGATAATGGAAATAGAACTCCAGAGCCAGGTGCTGGATGCCATGAACTATGTCCTTTACGACCAACTGAAGTTCAAGGGGAATCGAATGGATTACTATAATGCCCTCAACTTATATATGCATCAGGTTTTGATTCGCAGAACAGGAATCCCAATCAGCATGTCTCTGCTCTATTTGACAATTGCTCGGCAGTTGGGAGTCCCACTGGAGCCTGTCAACTTCCCAAGTCACTTCTTATTAAGGTGGTGCCAAGGCGCAGAAGGGGCGACCCTGGACATCTTTGACTACATCTACATAGATGCTTTTGGGAAAGGCAAGCAGCTGACAGTGAAAGAATGCGAGTACTTGATCGGCCAGCACGTGACTGCAGCACTGTATGGGGTGGTCAATGTCAAGAAGGTGTTACAGAGAATGGTGGGAAACCTGTTAAGCCTGGGGAAGCGGGAAGGCATCGACCAGTCATACCAGCTCCTGAGAGACTCGCTGGATCTCTATCTGGCAATGTACCCGGACCAGGTGCAGCTTCTCCTCCTCCAAGCCAGGCTTTACTTCCACCTGGGAATCTGGCCAGAGAAGTCTTTCTGTCTTGTTTTGAAGGTGCTTGACATCCTCCAGCACATCCAAACCCTAGACCCGGGGCAGCACGGGGCGGTGGGCTACCTGGTGCAGCACACTCTAGAGCACATTGAGCGCAAAAAGGAGGAGGTGGGCGTAGAGGTGAAGCTGCGCTCCGATGAGAAGCACAGAGATGTCTGCTACTCCATCGGGCTCATTATGAAGCATAAGAGGTATGGCTATAACTGTGTGATCTACGGCTGGGACCCCACCTGCATGATGGGACACGAGTGGATCCGGAACATGAACGTCCACAGCCTGCCGCACGGCCACCACCAGCCTTTCTATAACGTGCTGGTGGAGGACGGCTCCTGTCGATACGCAGCCCAAGAAAACTTGGAATATAACGTGGAGCCTCAAGAAATCTCACACCCTGACGTGGGACGCTATTTCTCAGAGTTTACTGGCACTCACTACATCCCAAACGCAGAGCTGGAGATCCGGTATCCAGAAGATCTGGAGTTTGTCTATGAAACGGTGCAGAATATTTACAGTGCAAAGAAAGAGAACATAGATGAGTAA MGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLSGDQPTIRKENFNNVPDLELNPIRSKIVRAFFDNRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKKENIDE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 117484364|117486824 FALSE|FALSE 117584082|117584082 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31609 PTK2::TSNARE1 ENSG00000169398.20::ENSG00000171045.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1598 TRUE 2881 TRUE 1102 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140664917:- chr8:141667999-142012315:- chr8:141675016:- TSNARE1 ENSG00000171045.16 protein_coding - - chr8:142212080-142403182:- chr8:142300647:- chr8:143293441-143484543:- chr8:143382008:- chr8:140660624 chr8:142305875 NA NA chr8:141670723 chr8:143387236 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FERM_N_2|79-174|5.1e-44^FERM_M|180-292|4.9e-16^FERM_F2|184-277|3.3e-06^UCMA|188-238|0.02^FERM_C_FAK1|304-401|1.1e-43^PK_Tyr_Ser-Thr|466-720|2.9e-100^Pkinase|468-718|2.3e-49^FERM_M|495-521|1.9^Haspin_kinase|536-615|1.3e-06^ABC1|541-620|0.0002^Kinase-like|544-659|6.8e-07^FERM_M|564-590|5.8^UCMA|705-738|0.011^Focal_AT|958-1089|4.7e-62^ABC1|992-1052|1.7^FERM_M|1049-1063|9.6^FERM_C_FAK1|1050-1084|0.94 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:1.21Mb] 22 31 22 17.49 ONLY_REF_SPLICE YES_LDAS 0.5137 GT 1.5656 AG 1.7465 ENST00000519419.5 1-3078 ENST00000662555.1 1132-1914 chr8|-|[2]140664917-140664997[0]|[2]140668269-140668424[0]|[2]140674298-140674404[1]|[0]140675460-140675499[0]|[2]140686632-140686694[0]|[2]140700891-140701022[0]|[2]140702570-140702707[0]|[2]140706119-140706205[0]|[2]140717598-140717709[2]|[1]140735251-140735455[1]|[0]140739018-140739107[1]|[0]140743230-140743330[2]|[1]140744652-140744767[0]|[2]140746760-140746860[1]|[0]140752232-140752316[0]|[2]140761165-140761262[1]|[0]140764234-140764290[1]|[0]140789474-140789526[2]|[1]140793354-140793384[1]|[0]140800459-140800576[0]|[2]140803543-140803650[0]|[2]140818277-140818354[0]|[2]140818880-140819020[0]|[2]140830472-140830526[2]|[1]140846260-140846322[2]|[1]140846599-140846678[0]|[2]140864312-140864399[2]|[1]140879471-140879637[0]|[2]140890543-140890769[1]|[0]140920814-140920913[0]<==>chr8|-|[2]142274781-142274863[1]|[0]142279860-142280324[1]|[0]142284413-142284485[0]|[2]142300486-142300647[0] atgttgttggaactggcaggccaagaggccctgaaaccagcaggtgccatctatatggagaaaagcggatgtagtccatttccagtgtgttgggctaaagaatatgacagatacctagcatctagcaaaataatggcagctgcttaccttgaccccaacttgaatcacacaccaaattcgagtactaagactcacctgggtactggtatggaacgttctcctggtgcaatggagcgagtattaaaggtctttcattattttgaaagcaatagtgagccaaccacctgggccagtattatcaggcatggagatgctactgatgtcaggggcatcattcagaagatagtggacagtcacaaagtaaagcatgtggcctgctatggattccgcctcagtcacctgcggtcagaggaggttcactggcttcacgtggatatgggcgtctccagtgtgagggagaagtatgagcttgctcacccaccagaggagtggaaatatgaattgagaattcgttatttgccaaaaggatttctaaaccagtttactgaagataagccaactttgaatttcttctatcaacaggtgaagagcgattatatgttagagatagctgatcaagtggaccaggaaattgctttgaagttgggttgtctagaaatacggcgatcatactgggagatgcggggcaatgcactagaaaagaagtctaactatgaagtattagaaaaagatgttggtttaaagcgattttttcctaagagtttactggattctgtcaaggccaaaacactaagaaaactgatccaacaaacatttagacaatttgccaaccttaatagagaagaaagtattctgaaattctttgagatcctgtctccagtctacagatttgataaggaatgcttcaagtgtgctcttggttcaagctggattatttcagtggaactggcaatcggcccagaagaaggaatcagttacctaacggacaagggctgcaatcccacacatcttgctgacttcactcaagtgcaaaccattcagtattcaaacagtgaagacaaggacagaaaaggaatgctacaactaaaaatagcaggtgcacccgagcctctgacagtgacggcaccatccctaaccattgcggagaatatggctgacctaatagatgggtactgccggctggtgaatggaacctcgcagtcatttatcatcagacctcagaaagaaggtgaacgggctttgccatcaataccaaagttggccaacagcgaaaagcaaggcatgcggacacacgccgtctctgtgtcagaaacagatgattatgctgagattatagatgaagaagatacttacaccatgccctcaaccagggattatgagattcaaagagaaagaatagaacttggacgatgtattggagaaggccaatttggagatgtacatcaaggcatttatatgagtccagagaatccagctttggcggttgcaattaaaacatgtaaaaactgtacttcggacagcgtgagagagaaatttcttcaagaagccttaacaatgcgtcagtttgaccatcctcatattgtgaagctgattggagtcatcacagagaatcctgtctggataatcatggagctgtgcacacttggagagctgaggtcatttttgcaagtaaggaaatacagtttggatctagcatctttgatcctgtatgcctatcagcttagtacagctcttgcatatctagagagcaaaagatttgtacacagggacattgctgctcggaatgttctggtgtcctcaaatgattgtgtaaaattaggagactttggattatcccgatatatggaagatagtacttactacaaagcttccaaaggaaaattgcctattaaatggatggctccagagtcaatcaattttcgacgttttacctcagctagtgacgtatggatgtttggtgtgtgtatgtgggagatactgatgcatggtgtgaagccttttcaaggagtgaagaacaatgatgtaatcggtcgaattgaaaatggggaaagattaccaatgcctccaaattgtcctcctaccctctacagccttatgacgaaatgctgggcctatgaccccagcaggcggcccaggtttactgaacttaaagctcagctcagcacaatcctggaggaagagaaggctcagcaagaagagcgcatgaggatggagtccagaagacaggccacagtgtcctgggactccggagggtctgatgaagcaccgcccaagcccagcagaccgggttatcccagtccgaggtccagcgaaggattttatcccagcccacagcacatggtacaaaccaatcattaccaggtttctggctaccctggttcacatggaatcacagccatggctggcagcatctatccaggtcaggcatctcttttggaccaaacagattcatggaatcatagacctcaggagatagcaatgtggcagcccaatgtggaggactctacagtattggacctgcgagggattgggcaagtgttgccaacccatctgatggaagagcgtctaatccgacagcaacaggaaatggaagaagatcagcgctggctggaaaaagaggaaagatttctgaaacctgatgtgagactctctcgaggcagtattgacagggaggatggaagtcttcagggtccgattggaaaccaacatatatatcagcctgtgggtaaaccagatcctgcagctccaccaaagaaaccgcctcgccctggagctcccggtcatctgggaagccttgccagcctcagcagccctgctgacagctacaacgagggtgtcaagcttcagccccaggaaatcagcccccctcctactgccaacctggaccggtcgaatgataaggtgtacgagaatgtgacgggcctggtgaaagctgtcatcgagatgtccagtaaaatccagccagccccaccagaggagtatgtccctatggtgaaggaagtcggcttggccctgaggacattattggccactgtggatgagaccattcccctcctaccagccagcacccaccgagagCAGAGTCCCCAGGCCCCGTTTGCCGAGCTGGCTGATGATGAGAAGGTCTTTAACGGGAGTGACAACATGTGGCAGGGCCAGGAGCAGGCGCTGCTCCCGGACATCACTGAAGAGGACCTGGAGGCCATCCGGCTGCGGGAGGAGGCCATCCTGCAGATGGAGAGCAACTTGCTGGATGTGAATCAGATCATCAAGGACTTGGCCTCCATGGTGTCAGAGCAAGGAGAAGCTGTTGGGTCCAGCAGCAGCAAAGCCATCTGCCAGCAGAGCTGCAGCCCCGAGCCGGCCGCGGCAGCCCTGCTGCTGGGTGCCGGGCCGGGCTCCACACCCCTGCGGCCGGGCCCCCACTCCCGCACCAAGACACGCAAGCCCAACTTCAGCCCCCAGGAGACGGAGGTGCTGGTGCAGAGGGTGCGGCGCCACTACCCGCTGCTGTTCGGGGCGCTGCGGGGCACACCTGCCCGAAAGCACCGCGTGTGGAGCCGCATCCTGCAGGCAGTGAACGCGCTGGGCTACTGCCGCCGCGACCTGGGGGACCTCAAGCACAAGTGGCGGGACCTGCGAGGTGCTGTGCGCAAGAAGCTGGCGGAGGGCGGCCCCGCCCCCGGCCTCCTCCTCACACCTGTGGAGCGCATGGTGGCAGAGACCTTTTCTGCCCACGGTCCCCAAGGCGAGGGCCAGACCACGGAGCCCCTGCCAAATAGTATTGAAGCCAGCCTTGAGGCTGCGTCCTCGCATGCGGAGGCAGCCCGCCAGCTCCTGGCTGGAGCCAGCCGGCACCAA MLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQHIYQPVGKPDPAAPPKKPPRPGAPGHLGSLASLSSPADSYNEGVKLQPQEISPPPTANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHREQSPQAPFAELADDEKVFNGSDNMWQGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVGSSSSKAICQQSCSPEPAAAALLLGAGPGSTPLRPGPHSRTKTRKPNFSPQETEVLVQRVRRHYPLLFGALRGTPARKHRVWSRILQAVNALGYCRRDLGDLKHKWRDLRGAVRKKLAEGGPAPGLLLTPVERMVAETFSAHGPQGEGQTTEPLPNSIEASLEAASSHAEAARQLLAGASRHQ FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31611 PTK2::TSNARE1 ENSG00000169398.20::ENSG00000171045.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1599 TRUE 2881 TRUE 1102 PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140664917:- chr8:141667999-142012315:- chr8:141675016:- TSNARE1 ENSG00000171045.16 protein_coding - - chr8:142212080-142403182:- chr8:142300644:- chr8:143293441-143484543:- chr8:143382005:- chr8:140660624 chr8:142305875 NA NA chr8:141670723 chr8:143387236 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FERM_N_2|79-174|5.1e-44^FERM_M|180-292|4.9e-16^FERM_F2|184-277|3.3e-06^UCMA|188-238|0.02^FERM_C_FAK1|304-401|1.1e-43^PK_Tyr_Ser-Thr|466-720|2.9e-100^Pkinase|468-718|2.3e-49^FERM_M|495-521|1.9^Haspin_kinase|536-615|1.3e-06^ABC1|541-620|0.0002^Kinase-like|544-659|6.8e-07^FERM_M|564-590|5.8^UCMA|705-738|0.011^Focal_AT|958-1089|4.7e-62^ABC1|992-1052|1.7^FERM_M|1049-1063|9.6^FERM_C_FAK1|1050-1084|0.94 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:1.21Mb] 17 31 17 13.51 ONLY_REF_SPLICE YES_LDAS 0.3968 GT 1.5656 AG 1.6402 ENST00000519419.5 1-3078 ENST00000662555.1 1135-1914 chr8|-|[2]140664917-140664997[0]|[2]140668269-140668424[0]|[2]140674298-140674404[1]|[0]140675460-140675499[0]|[2]140686632-140686694[0]|[2]140700891-140701022[0]|[2]140702570-140702707[0]|[2]140706119-140706205[0]|[2]140717598-140717709[2]|[1]140735251-140735455[1]|[0]140739018-140739107[1]|[0]140743230-140743330[2]|[1]140744652-140744767[0]|[2]140746760-140746860[1]|[0]140752232-140752316[0]|[2]140761165-140761262[1]|[0]140764234-140764290[1]|[0]140789474-140789526[2]|[1]140793354-140793384[1]|[0]140800459-140800576[0]|[2]140803543-140803650[0]|[2]140818277-140818354[0]|[2]140818880-140819020[0]|[2]140830472-140830526[2]|[1]140846260-140846322[2]|[1]140846599-140846678[0]|[2]140864312-140864399[2]|[1]140879471-140879637[0]|[2]140890543-140890769[1]|[0]140920814-140920913[0]<==>chr8|-|[2]142274781-142274863[1]|[0]142279860-142280324[1]|[0]142284413-142284485[0]|[2]142300486-142300644[0] atgttgttggaactggcaggccaagaggccctgaaaccagcaggtgccatctatatggagaaaagcggatgtagtccatttccagtgtgttgggctaaagaatatgacagatacctagcatctagcaaaataatggcagctgcttaccttgaccccaacttgaatcacacaccaaattcgagtactaagactcacctgggtactggtatggaacgttctcctggtgcaatggagcgagtattaaaggtctttcattattttgaaagcaatagtgagccaaccacctgggccagtattatcaggcatggagatgctactgatgtcaggggcatcattcagaagatagtggacagtcacaaagtaaagcatgtggcctgctatggattccgcctcagtcacctgcggtcagaggaggttcactggcttcacgtggatatgggcgtctccagtgtgagggagaagtatgagcttgctcacccaccagaggagtggaaatatgaattgagaattcgttatttgccaaaaggatttctaaaccagtttactgaagataagccaactttgaatttcttctatcaacaggtgaagagcgattatatgttagagatagctgatcaagtggaccaggaaattgctttgaagttgggttgtctagaaatacggcgatcatactgggagatgcggggcaatgcactagaaaagaagtctaactatgaagtattagaaaaagatgttggtttaaagcgattttttcctaagagtttactggattctgtcaaggccaaaacactaagaaaactgatccaacaaacatttagacaatttgccaaccttaatagagaagaaagtattctgaaattctttgagatcctgtctccagtctacagatttgataaggaatgcttcaagtgtgctcttggttcaagctggattatttcagtggaactggcaatcggcccagaagaaggaatcagttacctaacggacaagggctgcaatcccacacatcttgctgacttcactcaagtgcaaaccattcagtattcaaacagtgaagacaaggacagaaaaggaatgctacaactaaaaatagcaggtgcacccgagcctctgacagtgacggcaccatccctaaccattgcggagaatatggctgacctaatagatgggtactgccggctggtgaatggaacctcgcagtcatttatcatcagacctcagaaagaaggtgaacgggctttgccatcaataccaaagttggccaacagcgaaaagcaaggcatgcggacacacgccgtctctgtgtcagaaacagatgattatgctgagattatagatgaagaagatacttacaccatgccctcaaccagggattatgagattcaaagagaaagaatagaacttggacgatgtattggagaaggccaatttggagatgtacatcaaggcatttatatgagtccagagaatccagctttggcggttgcaattaaaacatgtaaaaactgtacttcggacagcgtgagagagaaatttcttcaagaagccttaacaatgcgtcagtttgaccatcctcatattgtgaagctgattggagtcatcacagagaatcctgtctggataatcatggagctgtgcacacttggagagctgaggtcatttttgcaagtaaggaaatacagtttggatctagcatctttgatcctgtatgcctatcagcttagtacagctcttgcatatctagagagcaaaagatttgtacacagggacattgctgctcggaatgttctggtgtcctcaaatgattgtgtaaaattaggagactttggattatcccgatatatggaagatagtacttactacaaagcttccaaaggaaaattgcctattaaatggatggctccagagtcaatcaattttcgacgttttacctcagctagtgacgtatggatgtttggtgtgtgtatgtgggagatactgatgcatggtgtgaagccttttcaaggagtgaagaacaatgatgtaatcggtcgaattgaaaatggggaaagattaccaatgcctccaaattgtcctcctaccctctacagccttatgacgaaatgctgggcctatgaccccagcaggcggcccaggtttactgaacttaaagctcagctcagcacaatcctggaggaagagaaggctcagcaagaagagcgcatgaggatggagtccagaagacaggccacagtgtcctgggactccggagggtctgatgaagcaccgcccaagcccagcagaccgggttatcccagtccgaggtccagcgaaggattttatcccagcccacagcacatggtacaaaccaatcattaccaggtttctggctaccctggttcacatggaatcacagccatggctggcagcatctatccaggtcaggcatctcttttggaccaaacagattcatggaatcatagacctcaggagatagcaatgtggcagcccaatgtggaggactctacagtattggacctgcgagggattgggcaagtgttgccaacccatctgatggaagagcgtctaatccgacagcaacaggaaatggaagaagatcagcgctggctggaaaaagaggaaagatttctgaaacctgatgtgagactctctcgaggcagtattgacagggaggatggaagtcttcagggtccgattggaaaccaacatatatatcagcctgtgggtaaaccagatcctgcagctccaccaaagaaaccgcctcgccctggagctcccggtcatctgggaagccttgccagcctcagcagccctgctgacagctacaacgagggtgtcaagcttcagccccaggaaatcagcccccctcctactgccaacctggaccggtcgaatgataaggtgtacgagaatgtgacgggcctggtgaaagctgtcatcgagatgtccagtaaaatccagccagccccaccagaggagtatgtccctatggtgaaggaagtcggcttggccctgaggacattattggccactgtggatgagaccattcccctcctaccagccagcacccaccgagagAGTCCCCAGGCCCCGTTTGCCGAGCTGGCTGATGATGAGAAGGTCTTTAACGGGAGTGACAACATGTGGCAGGGCCAGGAGCAGGCGCTGCTCCCGGACATCACTGAAGAGGACCTGGAGGCCATCCGGCTGCGGGAGGAGGCCATCCTGCAGATGGAGAGCAACTTGCTGGATGTGAATCAGATCATCAAGGACTTGGCCTCCATGGTGTCAGAGCAAGGAGAAGCTGTTGGGTCCAGCAGCAGCAAAGCCATCTGCCAGCAGAGCTGCAGCCCCGAGCCGGCCGCGGCAGCCCTGCTGCTGGGTGCCGGGCCGGGCTCCACACCCCTGCGGCCGGGCCCCCACTCCCGCACCAAGACACGCAAGCCCAACTTCAGCCCCCAGGAGACGGAGGTGCTGGTGCAGAGGGTGCGGCGCCACTACCCGCTGCTGTTCGGGGCGCTGCGGGGCACACCTGCCCGAAAGCACCGCGTGTGGAGCCGCATCCTGCAGGCAGTGAACGCGCTGGGCTACTGCCGCCGCGACCTGGGGGACCTCAAGCACAAGTGGCGGGACCTGCGAGGTGCTGTGCGCAAGAAGCTGGCGGAGGGCGGCCCCGCCCCCGGCCTCCTCCTCACACCTGTGGAGCGCATGGTGGCAGAGACCTTTTCTGCCCACGGTCCCCAAGGCGAGGGCCAGACCACGGAGCCCCTGCCAAATAGTATTGAAGCCAGCCTTGAGGCTGCGTCCTCGCATGCGGAGGCAGCCCGCCAGCTCCTGGCTGGAGCCAGCCGGCACCAA MLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKAQQEERMRMESRRQATVSWDSGGSDEAPPKPSRPGYPSPRSSEGFYPSPQHMVQTNHYQVSGYPGSHGITAMAGSIYPGQASLLDQTDSWNHRPQEIAMWQPNVEDSTVLDLRGIGQVLPTHLMEERLIRQQQEMEEDQRWLEKEERFLKPDVRLSRGSIDREDGSLQGPIGNQHIYQPVGKPDPAAPPKKPPRPGAPGHLGSLASLSSPADSYNEGVKLQPQEISPPPTANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPPEEYVPMVKEVGLALRTLLATVDETIPLLPASTHRESPQAPFAELADDEKVFNGSDNMWQGQEQALLPDITEEDLEAIRLREEAILQMESNLLDVNQIIKDLASMVSEQGEAVGSSSSKAICQQSCSPEPAAAALLLGAGPGSTPLRPGPHSRTKTRKPNFSPQETEVLVQRVRRHYPLLFGALRGTPARKHRVWSRILQAVNALGYCRRDLGDLKHKWRDLRGAVRKKLAEGGPAPGLLLTPVERMVAETFSAHGPQGEGQTTEPLPNSIEASLEAASSHAEAARQLLAGASRHQ FALSE TRUE hsa-mir-151a chr8:140732564-140732653:- FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31616 ARID1B::TPRG1 ENSG00000049618.25::ENSG00000188001.10 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1602 FALSE NA FALSE NA ARID1B ENSG00000049618.25 protein_coding + + chr6:156776020-157210779:+ chr6:156779471:+ chr6:157097154-157531913:+ chr6:157100605:+ TPRG1 ENSG00000188001.10 protein_coding + + chr3:188947214-189325304:+ chr3:189310386:+ chr3:188665003-189043093:+ chr3:189028175:+ chr6:156808359,chr6:156808358,chr6:156808292,chr6:156808359,chr6:156808356 chr3:189271180,chr3:189271176,chr3:189271056,chr3:189271174,chr3:189271174 NA NA chr6:157129493,chr6:157129492,chr6:157129426,chr6:157129493,chr6:157129490 chr3:188988969,chr3:188988965,chr3:188988845,chr3:188988963,chr3:188988963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2235|154-213|0.00036^Presenilin|154-211|0.034^BAF250_C|193-216|3.8^ARID|1162-1246|6.2e-25^BAF250_C-PARTIAL|1743-1791~|0.84^Presenilin-PARTIAL|1753-1791~|0.00025 none ["ARID1B:Oncogene","ARID1B:FoundationOne_panel","ARID1B:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr3] 11 6 11 6 ONLY_REF_SPLICE YES_LDAS 0.2211 GT 1.9329 AG 1.2867 ENST00000414678.8 1-1791 ENST00000433971.5 480-828 chr6|+|[0]156777681-156779471[2]<==>chr3|+|[2]189310386-189310539[2]|[0]189320626-189320820[2] atggccgcgcgggcagcagcggcggcggcggcggcggcggcgcgggcgcgggcgcgggcaggcagcggcgaacggcgggcgccccccgggccgcggccggcgcccggagcccgggacctggaggcgggggcgcgcggcgcggcggcggcggcggcggcaccgggacccatgctggggggcggcggcgacggcggcggcggcctgaacagtgtgcaccaccaccccctgctcccccgtcacgaactcaacatggcccataacgcgggcgccgcggccgccgccggcacccacagcgccaagagcggcggctccgaggcggctctcaaggagggtggaagcgccgccgcgctgtcctcctcctcctcctcctccgcggcggcagcggcggcatcctcttcctcctcgtcgggcccgggctcggccatggagacggggctgctccccaaccacaaactgaaaaccgttggcgaagcccccgccgcgccgccccaccagcagcaccaccaccaccaccatgcccaccaccaccaccaccatgcccaccacctccaccaccaccacgcactacagcagcagctaaaccagttccagcagcagcagcagcagcagcaacagcagcagcagcagcagcagcaacagcaacatcccatttccaacaacaacagcttgggcggcgcgggcggcggcgcgcctcagcccggccccgacatggagcagccgcaacatggaggcgccaaggacagtgctgcgggcggccaggccgaccccccgggcccgccgctgctgagcaagccgggcgacgaggacgacgcgccgcccaagatgggggagccggcgggcggccgctacgagcacccgggcttgggcgccctgggcacgcagcagccgccggtcgccgtgcccgggggcggcggcggcccggcggccgtcccggagtttaataattactatggcagcgctgcccctgcgagcggcggccccggcggccgcgctgggccttgctttgatcaacatggcggacaacaaagccccgggatggggatgatgcactccgcctccgccgccgccgccggggcccccggcagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtgcaaccattatccgggctacagccggcccggcgcgggcggcggcggcggcggcggcggcggaggaggaggaggcagcggaggaggaggaggaggaggaggagcaggagcaggaggagcaggagcgggagctgtggcggcggcggccgcggcggcggcggcagcagcaggaggcggcggcggcggcggctatgggggctcgtccgcggggtacggggtgctgagctccccccggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaaggcggccgccggctcggcggcggggggcttccagcgcttcgccggccagaaccagcacccgtcgggggccaccccgaccctcaatcagctgctcacctcgcccagccccatgatgcggagctacggcggcagctaccccgagtacagcagccccagcgcgccgccgccgccgccgtcgcagccccagtcccaggcggcggcggcgggggcggcggcgggcggccagcaggcggccgcgggcatgggcttgggcaaggacatgggcgcccagtacgccgctgccagcccggcctgggcggccgcgcaacaaaggagtcacccggcgatgagccccggcacccccggaccgaccatgggcagatcccagGAGACAAGGAGAAGGCCTTAGGATCTACTGGGGGAGTCCGGAGGAGCAGTCTCTTCTGTCCCGCTGGAACCCATGGTCCACTGAAGTTCCTTATGCTACTTTCACTGAGCATCCTATGAAATACACCAGTGAGAAATTCCTTGAAATTTGCAAGTTGTCTGGGTTCATGTCTAAGCTTGTTCCAGCTATCCAGAATGCCCACAAGAATTCAACTGGATCTGGAAGAGGAAAGAAACTGATGGTGTTAACTGAACCCATTTTGATTGAGACCTACACAGGGCTGATGTCATTCATTGGAAACCGCAACAAACTTGGCTATTCCCTTGCCCGTGGGAGTATTGGTTTTTGA MAARAAAAAAAAAARARARAGSGERRAPPGPRPAPGARDLEAGARGAAAAAAAPGPMLGGGGDGGGGLNSVHHHPLLPRHELNMAHNAGAAAAAGTHSAKSGGSEAALKEGGSAAALSSSSSSSAAAAAASSSSSSGPGSAMETGLLPNHKLKTVGEAPAAPPHQQHHHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPGPPLLSKPGDEDDAPPKMGEPAGGRYEHPGLGALGTQQPPVAVPGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQETRRRP*DLLGESGGAVSSVPLEPMVH*SSLCYFH*ASYEIHQ*EIP*NLQVVWVHV*ACSSYPECPQEFNWIWKRKETDGVN*THFD*DLHRADVIHWKPQQTWLFPCPWEYWFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1B 1 Yes breast, hepatocellular carcinoma, clear cell ovarian carcinoma epithelial TSG missense, frameshift, nonsense, other FALSE NA NA NA NA NA NA NA NA NA 31617 WNK2::CARD19 ENSG00000165238.17::ENSG00000165233.18 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA WNK2 ENSG00000165238.17 protein_coding + + chr9:93184122-93320572:+ chr9:93268746:+ chr9:95946404-96082854:+ chr9:96031028:+ CARD19 ENSG00000165233.18 protein_coding + + chr9:93096217-93113283:+ chr9:93107674:+ chr9:95858499-95875565:+ chr9:95869956:+ chr9:93283851,chr9:93283849 chr9:93100627,chr9:93100622 NA NA chr9:96046133,chr9:96046131 chr9:95862909,chr9:95862904 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame OSR1_C|179-191|0.65^PK_Tyr_Ser-Thr|196-449|3.1e-43^Pkinase|200-453|2.4e-57^OSR1_C|474-537|1.6e-29^OSR1_C|1214-1243|1.8e-06 CARD|42-95|4.3e-08 ["WNK2:Oncogene"];["TCGA_StarF2019","CCLE_StarF2019"] 11 8 11 8 ONLY_REF_SPLICE YES_LDAS 0.2472 GT 1.5656 AG 1.9656 ENST00000395477.6 1-4033 ENST00000466409.1 8-687 chr9|+|[0]93184930-93185610[2]|[0]93229696-93229868[1]|[2]93230888-93231108[0]|[1]93234808-93234965[2]|[0]93238233-93238321[1]|[2]93239757-93239976[2]|[0]93247543-93247834[0]|[1]93252883-93253082[2]|[0]93256299-93256454[2]|[0]93256948-93257139[2]|[0]93258931-93259614[2]|[0]93261814-93262107[2]|[0]93262670-93262719[1]|[2]93263566-93263734[2]|[0]93263917-93264033[2]|[0]93267746-93267916[2]|[0]93268020-93268065[0]|[1]93268627-93268746[0]<==>chr9|+|[1]93107674-93107816[2]|[0]93110568-93111104[2] atggacggcgatggcggccgccgagacgtccccggcacgctgatggagcccgggcgcggcgcggggcccgcgggcatggcggagcctcgggcgaaggcggcgcggccggggccccagcgctttctgcggcgcagcgtggtagagtcggaccaggaggagccgccgggcttggaggcagccgaggcgccgggcccgcagcccccgcagcccctgcagcgccgggtgcttctgctctgcaagacgcgccgcctcatcgcggagcgcgcccgcggacgccccgccgcccccgcgcccgcagcgctggtagcgcagccgggagcccccggagcccccgcggacgccggccccgagcccgtgggcacgcaggagcccggcccggaccccatcgcagccgctgtcgaaaccgcgcctgcccccgacggcggccccagggaggaggcggcggcgaccgtgaggaaggaggatgagggggcggccgaggcgaagcctgagcccgggcgcactcgccgggacgagcccgaagaggaggaggacgacgaggacgacctcaaggccgtggccacctctctggacggccgcttcctcaagttcgacatcgagctgggccgcggttccttcaagacggtctacaaggggctggacacggagacctgggtggaggtggcctggtgtgagctgcaggaccggaagctcaccaagctggagcggcagcggttcaaggaagaggctgagatgctgaaaggcctgcagcaccccaacatcgtgcgcttctacgacttctgggagtccagcgccaagggcaagcggtgcattgtgctggtgacggagctgatgacctcagggacgctgaagacatacctgaagcggttcaaggtgatgaagcccaaggttctccgcagctggtgccggcagatcctgaagggcctgctgttcctgcacacaaggacgccacccatcatccaccgagacctgaaatgtgacaatattttcatcaccggaccaactgggtctgtgaagattggcgacttgggcctggccactctgaaaagagcgtcatttgccaaaagtgtgataggtactcccgagttcatggcgcccgagatgtacgaggagcactacgatgagtccgtggacgtctatgcctttgggatgtgcatgctggagatggccacctcggagtacccctactcggagtgccagaatgcggcccagatctaccgcaaggtcacctgtggtatcaagccggccagctttgagaaagtgcacgatcctgaaatcaaggagattattggggagtgtatctgcaaaaacaaggaggaaaggtacgagatcaaagacctgctgagccacgccttcttcgcagaggacacaggcgtgagggtggagctcgcggaggaggaccacggcaggaagtccaccatcgccctgaggctctgggtggaagaccccaagaaactgaagggaaagcccaaggacaatggagccatagagttcaccttcgacctggagaaggagacgccggatgaggtggcccaagagatgattgagtctggattcttccacgagagtgacgtcaagatcgtggccaagtccatccgtgaccgcgtggccttgatccagtggcggcgggagaggatctggcccgcgctgcagcccaaggagcagcaggatgtgggcagcccggacaaggccaggggtccgccggtgcccctgcaggtccaggtgacctaccatgcacaggctgggcagcccgggccaccagagcccgaggagccggaggccgaccagcacctcctgccacctacgttgccgaccagcgccacctccctggcctcggacagcaccttcgacagcggccagggctctaccgtgtactcagactcgcagagcagccagcagagcgtgatgcttggctcccttgccgacgcagcgccgtccccggcccagtgtgtgtgcagcccccctgtgagcgaggggcccgtcctgccgcagagcctgccctcgctgggggcctaccagcagcccacggctgcacctggcttgccggtgggctctgtcccggcccccgcctgccctccgtccctccagcagcacttcccggatccggccatgagcttcgcccccgtgctgccgccgcccagcacccccatgcccacgggcccaggccagccagcaccccccggccagcagcctcctccgctggcccagccgacacccctgccgcaggtcctggccccacagcccgtggtccccctccagccggttcccccccacctgccaccgtacctggctccagcctcccaggtgggggcccccgctcagctgaagcccctccagatgccacaggcgcccctgcagccgcttgctcaagtccctccgcagatgcccccgattcctgttgtgccccccatcacgcccctggcgggaatcgacggcctccctccggccctcccagacctgccgaccgcgactgtgcctcccgtgccaccacctcagtatttctctccagccgtgatcttgccgagcctcgctgccccactcccccctgcgtccccagccttgcctctgcaggctgtgaagctgccccacccccctggggcgcccctggccatgccctgccggaccattgtgccaaatgcaccggccactatccccctgctggccgtagccccaccgggcgtggctgccctgtccattcattctgccgtggcccagctcccaggccaacctgtgtacccagcggccttcccacagatggcgcctactgacgtccctccttccccccatcacacggtgcagaatatgagggccacccctccacagccggcactgcctccacaacccacactgcccccacaacccgtgctgcccccgcaacccacgctgccccctcaacctgtgttgcccccgcaacccacacggccccctcaacctgtgctgcccccgcaacccatgctgcccccacaacctgtgctgcccccgcagccggcactgcctgtgcgccctgagcccctccagccccaccttcctgaacaagctgctccagctgctacaccagggagccagattctgcttggccacccagctccctatgctgtggacgtcgccgctcaggtccccaccgtgcctgtgccaccggctgcggtcctctcgccgcctctgccggaagtgctgctgcctgccgcccctgagctcctgcctcagttccccagctccctggccacggtgtctgcctctgtgcagagtgtgcccacccagactgccacacttctgccaccagcaaacccaccgctgcctggcgggcccgggatcgccagcccttgcccaactgtccagctgacggtggaaccagtccaagaggagcaggcctcacaggacaagccgcccggcctcccgcagagctgtgagagctatggaggttctgatgtcacttctggaaaagagctgagtgacagctgtgaaggcgcctttggagggggcaggctggagggcagggcagcccgaaaacaccaccgcaggtccacgcgtgcgcgctcccggcaggagagggccagccggccccggcttaccatcttgaacgtgtgcaacactggggacaagatggtggagtgccagctggagacgcacaaccacaagatggtgaccttcaagttcgacttggacggggacgcacccgatgaaattgccacgtatatggtggagcatgactttatcctgcaggccgagcgggaaacgttcatcgagcagatgaaggatgtcatggacaaggcagaggacatgctcagcgaggacacagacgccgaccgtggctccgacccagggaccagcccgccacacctcagcacctgcggcctgggcaccggggaggagagccgacaatcccaagccaacgcccccgtgtatcagcagaacgtcctgcacaccgggaagaggtggttcatcatctgtccggtggctgagcaccccgcccccgaggcccctgaatcttcgcccccacttcctctaagctccctgccgccagaagccagccaagATCAGACCTATTGTGACCGCCTGGTGCAGGACACGCCTTTCCTGACAGGCCATGGGCGCTTGAGTGAGCAGCAGGTGGACAGGATCATCCTCCAGCTGAACCGTTACTACCCACAGATCCTTACCAACAAGGAGGCGGAAAAGTTCCGGAACCCCAAGGCATCCTTGCGTGTGCGGCTCTGTGACCTCCTGAGCCACCTGCAGCGGAGCGGTGAGCGGGACTGCCAGGAGTTCTACCGAGCCCTGTATATCCATGCCCAGCCCCTGCACAGCCGCCTGCCCAGCCGCCACGCTCTGCGTAAGTTCCACATCACCAACCATGCATGCTTGGTGCTGGCCCGGGGAGGGCACCCCAGCCTGCCGTTGATGGCATGGATGTCCTCCATGACCACCCAAGTCTGCTGCAGCCCAGGCCTGGCATCCCCTCTCGCCTCAGCCCCTCCCCAGAGGCCACCCTCTGGCCCCGAGGGGAGAGTGTGGCAGGCACAGGCAGTGCAGATGTTGGTCTCTGTCTCCCACTTTCTCCCCCTTCCTCCGTCTCTCTCTCATGGCAGTTTTCACACAGCATGGGGCATCTTATACGTCCACTCTTGCCCTTCCTTTTCTAACCTCATTCCACGGGGATCCCTTCATGTCTGTGTGGACAGCAACCTTGTTCCCACAGCTGCATGGCGCTCCTAG MDGDGGRRDVPGTLMEPGRGAGPAGMAEPRAKAARPGPQRFLRRSVVESDQEEPPGLEAAEAPGPQPPQPLQRRVLLLCKTRRLIAERARGRPAAPAPAALVAQPGAPGAPADAGPEPVGTQEPGPDPIAAAVETAPAPDGGPREEAAATVRKEDEGAAEAKPEPGRTRRDEPEEEEDDEDDLKAVATSLDGRFLKFDIELGRGSFKTVYKGLDTETWVEVAWCELQDRKLTKLERQRFKEEAEMLKGLQHPNIVRFYDFWESSAKGKRCIVLVTELMTSGTLKTYLKRFKVMKPKVLRSWCRQILKGLLFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKSVIGTPEFMAPEMYEEHYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRKVTCGIKPASFEKVHDPEIKEIIGECICKNKEERYEIKDLLSHAFFAEDTGVRVELAEEDHGRKSTIALRLWVEDPKKLKGKPKDNGAIEFTFDLEKETPDEVAQEMIESGFFHESDVKIVAKSIRDRVALIQWRRERIWPALQPKEQQDVGSPDKARGPPVPLQVQVTYHAQAGQPGPPEPEEPEADQHLLPPTLPTSATSLASDSTFDSGQGSTVYSDSQSSQQSVMLGSLADAAPSPAQCVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGLPVGSVPAPACPPSLQQHFPDPAMSFAPVLPPPSTPMPTGPGQPAPPGQQPPPLAQPTPLPQVLAPQPVVPLQPVPPHLPPYLAPASQVGAPAQLKPLQMPQAPLQPLAQVPPQMPPIPVVPPITPLAGIDGLPPALPDLPTATVPPVPPPQYFSPAVILPSLAAPLPPASPALPLQAVKLPHPPGAPLAMPCRTIVPNAPATIPLLAVAPPGVAALSIHSAVAQLPGQPVYPAAFPQMAPTDVPPSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPPQPMLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAPYAVDVAAQVPTVPVPPAAVLSPPLPEVLLPAAPELLPQFPSSLATVSASVQSVPTQTATLLPPANPPLPGGPGIASPCPTVQLTVEPVQEEQASQDKPPGLPQSCESYGGSDVTSGKELSDSCEGAFGGGRLEGRAARKHHRRSTRARSRQERASRPRLTILNVCNTGDKMVECQLETHNHKMVTFKFDLDGDAPDEIATYMVEHDFILQAERETFIEQMKDVMDKAEDMLSEDTDADRGSDPGTSPPHLSTCGLGTGEESRQSQANAPVYQQNVLHTGKRWFIICPVAEHPAPEAPESSPPLPLSSLPPEASQDQTYCDRLVQDTPFLTGHGRLSEQQVDRIILQLNRYYPQILTNKEAEKFRNPKASLRVRLCDLLSHLQRSGERDCQEFYRALYIHAQPLHSRLPSRHALRKFHITNHACLVLARGGHPSLPLMAWMSSMTTQVCCSPGLASPLASAPPQRPPSGPEGRVWQAQAVQMLVSVSHFLPLPPSLSHGSFHTAWGILYVHSCPSFSNLIPRGSLHVCVDSNLVPTAAWRS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK2 Other WNK Q9Y3S1 FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE WNK lysine deficient protein kinase 2 2 gastric cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 31618 AFG1L::ENSG00000286511 ENSG00000135537.17::ENSG00000286511.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA AFG1L ENSG00000135537.17 protein_coding + + chr6:108294991-108526796:+ chr6:108324048:+ chr6:108616195-108847999:+ chr6:108645252:+ ENSG00000286511 ENSG00000286511.1 lncRNA + + chr6:108798929-108837113:+ chr6:108835229:+ chr6:109120132-109158316:+ chr6:109156432:+ chr6:108325439,chr6:108325503,chr6:108325500 chr6:108805644,chr6:108805644,chr6:108805638 NA NA chr6:108646643,chr6:108646707,chr6:108646704 chr6:109126847,chr6:109126847,chr6:109126841 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 8 11 8 ONLY_REF_SPLICE YES_LDAS 0.2472 GT 1.9219 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31622 TESC::FBXO21 ENSG00000088992.18::ENSG00000135108.16 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1597 TRUE 2880 TRUE 1101 TESC ENSG00000088992.18 protein_coding - - chr12:117038923-117099479:- chr12:117075271:- chr12:117476728-117537284:- chr12:117513076:- FBXO21 ENSG00000135108.16 protein_coding - - chr12:117141991-117190470:- chr12:117177641:- chr12:117579796-117628275:- chr12:117615446:- chr12:117053079 chr12:117185880 NA NA chr12:117490884 chr12:117623685 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame M16C_assoc|9-62|3.4e-06 YccV-like-PARTIAL|~471-484|0.81^YccV-like|501-592|7.1e-35 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.04Mb];LOCAL_REARRANGEMENT:-:[42509] 7 14 7 1.04 ONLY_REF_SPLICE YES_LDAS 0.1046 GT 1.8892 AG 1.9656 ENST00000462502.5 1-128 ENST00000330622.9 471-1887 chr12|-|[1]117075271-117075340[1]|[0]117099225-117099282[0]<==>chr12|-|[2]117146087-117146277[1]|[0]117155791-117155948[2]|[1]117157873-117158084[0]|[2]117165485-117165617[2]|[1]117166898-117167077[2]|[1]117172471-117172607[0]|[2]117174205-117174341[1]|[0]117174651-117174797[1]|[0]117177520-117177641[2] atgggcgctgcccactccgcgtctgaggaggtgcgggagctcgagggcaagaccggcttctcatcggatcagatcgagcagctccatcggagatttaagcagctgagtggagatcagcctaccattcgAAAAGCTTTGACCTGGAAATACTACGCAAAAAAAATTCTTTACTACCTGCGGCAACAGAAGATCTTAAATAATCTTAAGGCCTTTCTTCAGCAGCCAGATGACTATGAGTCGTATCTTGAAGGTGCTGTATATATTGACCAGTACTGCAATCCTCTCTCCGACATCAGCCTCAAAGACATCCAGGCCCAAATTGACAGCATCGTGGAGCTTGTTTGCAAAACCCTTCGGGGCATAAACAGTCGCCACCCCAGCTTGGCCTTCAAGGCAGGTGAATCATCCATGATAATGGAAATAGAACTCCAGAGCCAGGTGCTGGATGCCATGAACTATGTCCTTTACGACCAACTGAAGTTCAAGGGGAATCGAATGGATTACTATAATGCCCTCAACTTATATATGCATCAGGTTTTGATTCGCAGAACAGGAATCCCAATCAGCATGTCTCTGCTCTATTTGACAATTGCTCGGCAGTTGGGAGTCCCACTGGAGCCTGTCAACTTCCCAAGTCACTTCTTATTAAGGTGGTGCCAAGGCGCAGAAGGGGCGACCCTGGACATCTTTGACTACATCTACATAGATGCTTTTGGGAAAGGCAAGCAGCTGACAGTGAAAGAATGCGAGTACTTGATCGGCCAGCACGTGACTGCAGCACTGTATGGGGTGGTCAATGTCAAGAAGGTGTTACAGAGAATGGTGGGAAACCTGTTAAGCCTGGGGAAGCGGGAAGGCATCGACCAGTCATACCAGCTCCTGAGAGACTCGCTGGATCTCTATCTGGCAATGTACCCGGACCAGGTGCAGCTTCTCCTCCTCCAAGCCAGGCTTTACTTCCACCTGGGAATCTGGCCAGAGAAGTCTTTCTGTCTTGTTTTGAAGGTGCTTGACATCCTCCAGCACATCCAAACCCTAGACCCGGGGCAGCACGGGGCGGTGGGCTACCTGGTGCAGCACACTCTAGAGCACATTGAGCGCAAAAAGGAGGAGGTGGGCGTAGAGGTGAAGCTGCGCTCCGATGAGAAGCACAGAGATGTCTGCTACTCCATCGGGCTCATTATGAAGCATAAGAGGTATGGCTATAACTGTGTGATCTACGGCTGGGACCCCACCTGCATGATGGGACACGAGTGGATCCGGAACATGAACGTCCACAGCCTGCCGCACGGCCACCACCAGCCTTTCTATAACGTGCTGGTGGAGGACGGCTCCTGTCGATACGCAGCCCAAGAAAACTTGGAATATAACGTGGAGCCTCAAGAAATCTCACACCCTGACGTGGGACGCTATTTCTCAGAGTTTACTGGCACTCACTACATCCCAAACGCAGAGCTGGAGATCCGGTATCCAGAAGATCTGGAGTTTGTCTATGAAACGGTGCAGAATATTTACAGTGCAAAGAAAGAGAACATAGATGAGTAA MGAAHSASEEVRELEGKTGFSSDQIEQLHRRFKQLSGDQPTIRKALTWKYYAKKILYYLRQQKILNNLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHPSLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPEDLEFVYETVQNIYSAKKENIDE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 117484364|117486824 FALSE|FALSE 117584082|117584082 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31627 CREBBP::ADCY9 ENSG00000005339.15::ENSG00000162104.10 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1601 FALSE NA FALSE NA CREBBP ENSG00000005339.15 protein_coding - - chr16:3725054-3880713:- chr16:3810603:- chr16:3775055-3930714:- chr16:3860604:- ADCY9 ENSG00000162104.10 protein_coding - - chr16:3953387-4116442:- chr16:4007558:- chr16:4003388-4166443:- chr16:4057559:- chr16:3807655,chr16:3807660 chr16:4014801,chr16:4014780 NA NA chr16:3857656,chr16:3857661 chr16:4064802,chr16:4064781 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Creb_binding|106-159|10^Creb_binding|322-340|9.7^zf-TAZ|354-405|1.6e-12^Creb_binding|443-482|0.096^KIX|550-629|4.6e-42^KIX_2|552-632|5.9e-10^Creb_binding|743-743|10^Creb_binding|825-852|4.2^Creb_binding|880-918|10 none ["CREBBP:FoundationOne_panel","CREBBP:ArcherDX_panel","CREBBP:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023"];INTRACHROMOSOMAL[chr16:0.07Mb];LOCAL_REARRANGEMENT:-:[72661] 7 15 7 14.6 ONLY_REF_SPLICE YES_LDAS 0.281 GT 1.9219 AG 1.9656 ENST00000382070.7 1-975 ENST00000294016.8 1694-4062 chr16|-|[2]3810603-3810779[0]|[2]3850297-3851009[1]|[0]3879832-3879916[0]<==>chr16|-|[2]3965775-3966966[2]|[1]3974669-3974710[2]|[1]3977482-3977630[0]|[2]3979116-3979275[2]|[1]3983232-3983440[0]|[2]3988994-3989096[2]|[1]3992146-3992363[0]|[2]3993406-3993510[0]|[2]4007368-4007558[1] atggctgagaacttgctggacggaccgcccaaccccaaaagagccaaactcagctcgcccggtttctcggcgaatgacagcacagattttggatcattgtttgacttggaaaatgatcttcctgatgagctgatacccaatggaggagaattaggccttttaaacagtgggaaccttgttccagatgctgcttccaaacataaacaactgtcggagcttctacgaggaggcagcggctctagtatcaacccaggaataggaaatgtgagcgccagcagccccgtgcagcagggcctgggtggccaggctcaagggcagccgaacagtgctaacatggccagcctcagtgccatgggcaagagccctctgagccagggagattcttcagcccccagcctgcctaaacaggcagccagcacctctgggcccacccccgctgcctcccaagcactgaatccgcaagcacaaaagcaagtggggctggcgactagcagccctgccacgtcacagactggacctggtatctgcatgaatgctaactttaaccagacccacccaggcctcctcaatagtaactctggccatagcttaattaatcaggcttcacaagggcaggcgcaagtcatgaatggatctcttggggctgctggcagaggaaggggagctggaatgccgtaccctactccagccatgcagggcgcctcgagcagcgtgctggctgagaccctaacgcaggtttccccgcaaatgactggtcacgcgggactgaacaccgcacaggcaggaggcatggccaagatgggaataactgggaacacaagtccatttggacagccctttagtcaagctggagggcagccaatgggagccactggagtgaacccccagttagccagcaaacagagcatggtcaacagtttgcccaccttccctacagatatcaagaatacttcagtcaccaacgtgccaaatatgGTTTGAAGACATACCTGATATCGGGTCAGAGAGCCAAGGAGTCTCGCTGCAGCTGTGCAGAGGCCTTGCTTTCTGGCTTTGAGGTCATTGACGGCTCACAGGTGTCCTCAGGCCCTAGGGGACAGGGGACAGCGTCATCAGGGAATGTCAGTGACTTGGCGCAGACTGTCAAAACCTTTGATAACCTTAAGACCTGCCCTTCGTGCGGAATCACATTTGCTCCCAAATCTGAAGCCGGCGCCGAGGGAGGAGCACCTCAAAACGGCTGCCAAGACGAGCATAAAAACAGCACCAAGGCTTCTGGAGGACCTAATCCCAAAACTCAGAACGGGCTCCTCAGCCCTCCCCAAGAGGAGAAGCTCACCAACAGTCAGACTTCTCTGTGTGAGATCTTGCAGGAGAAGGGAAGGTGGGCAGGGGTGAGCCTGGACCAGTCGGCTCTCCTTCCGCTGAGGTTCAAGAACATCCGGGAGAAAACGGACGCCCACTTTGTGGACGTTATCAAAGAAGACAGCCTGATGAAAGATTACTTTTTTAAGCCGCCCATTAATCAGTTCAGCCTGAACTTCCTGGATCAGGAGCTGGAGCGATCCTACAGGACCAGCTATCAGGAAGAGGTCATAAAGAACTCCCCCGTGAAGACGTTTGCTAGTCCCACCTTCAGCTCCCTCCTGGATGTGTTTCTGTCGACCACAGTGTTTCTGACGCTGTCCACCACCTGCTTCCTGAAGTACGAGGCGGCCACCGTGCCTCCCCCGCCCGCCGCCCTGGCGGTCTTCAGTGCAGCCCTGCTGCTGGAGGTGCTGTCCCTCGCGGTGTCCATCAGGATGGTGTTCTTCCTGGAGGACGTCATGGCCTGCACCAAGCGCCTGCTGGAGTGGATCGCCGGCTGGCTACCACGTCACTGCATCGGGGCCATCCTGGTGTCGCTTCCCGCACTGGCCGTCTACTCCCATGTCACCTCCGAATATGAGACCAACATACACTTCCCAGTGTTCACAGGCTCGGCCGCGCTGATTGCCGTCGTGCACTACTGTAACTTCTGCCAGCTCAGCTCCTGGATGAGGTCCTCCCTCGCCACCGTCGTGGGGGCCGGGCCGCTGCTCCTGCTCTACGTCTCCCTGTGCCCAGACAGTTCTGTATTAACTTCGCCCCTTGACGCAGTACAGAATTTCAGTTCCGAGAGGAACCCGTGCAATAGTTCGGTGCCGCGTGACCTCCGGCGGCCCGCCAGCCTCATCGGCCAGGAGGTGGTTCTCGTCTTCTTTCTCCTGCTCTTGTTGGTCTGGTTCCTGAATCGCGAATTTGAAGTCAGCTACCGCCTCCACTACCACGGAGACGTGGAAGCGGATCTTCACCGCACCAAGATCCAGAGCATGCGGGACCAGGCAGACTGGCTGCTGAGGAACATCATCCCCTACCACGTGGCTGAGCAGCTGAAGGTGTCCCAGACCTACTCCAAGAACCATGACAGCGGAGGGGTGATCTTCGCCAGCATCGTCAACTTCAGCGAGTTCTACGAGGAGAACTACGAGGGCGGCAAGGAGTGCTACCGGGTCCTCAACGAGCTCATCGGGGACTTTGACGAGCTCCTAAGCAAGCCGGACTACAGCAGCATCGAGAAGATCAAGACCATCGGAGCCACGTACATGGCGGCGTCAGGGCTGAACACCGCGCAGGCCCAGGACGGCAGCCACCCGCAGGAGCACCTGCAGATCCTGTTCGAGTTCGCCAAGGAGATGATGCGCGTGGTGGACGACTTCAACAACAACATGCTGTGGTTCAACTTCAAGCTCCGCGTCGGCTTCAACCATGGGCCCCTCACGGCCGGGGTCATCGGCACCACCAAGCTGCTGTACGACATCTGGGGAGACACCGTCAACATCGCCAGCAGGATGGACACCACCGGCGTGGAGTGCCGCATCCAGGTGAGCGAAGAGAGCTACCGCGTCTTGAGCAAGATGGGCTATGACTTCGACTACAGAGGGACCGTGAATGTCAAGGGGAAAGGCCAGATGAAGACCTACCTGTACCCAAAGTGCACGGATCACAGGGTCATCCCACAGCACCAGCTGTCCATCTCCCCAGACATCCGCGTCCAGGTGGATGGCAGCATCGGACGGTCTCCCACAGACGAGATTGCCAACCTGGTGCCTTCTGTCCAGTATGTGGACAAGACATCTCTGGGTTCTGACAGCAGCACGCAGGCCAAGGATGCCCACCTGTCCCCCAAGAGACCGTGGAAGGAGCCCGTCAAAGCCGAAGAAAGGGGTCGATTTGGCAAAGCCATAGAGAAAGACGACTGTGACGAAACAGGAATAGAAGAAGCCAACGAACTCACCAAGCTCAACGTTTCAAAGAGTGTGTGA MAENLLDGPPNPKRAKLSSPGFSANDSTDFGSLFDLENDLPDELIPNGGELGLLNSGNLVPDAASKHKQLSELLRGGSGSSINPGIGNVSASSPVQQGLGGQAQGQPNSANMASLSAMGKSPLSQGDSSAPSLPKQAASTSGPTPAASQALNPQAQKQVGLATSSPATSQTGPGICMNANFNQTHPGLLNSNSGHSLINQASQGQAQVMNGSLGAAGRGRGAGMPYPTPAMQGASSSVLAETLTQVSPQMTGHAGLNTAQAGGMAKMGITGNTSPFGQPFSQAGGQPMGATGVNPQLASKQSMVNSLPTFPTDIKNTSVTNVPNMV*RHT*YRVREPRSLAAAVQRPCFLALRSLTAHRCPQALGDRGQRHQGMSVTWRRLSKPLITLRPALRAESHLLPNLKPAPREEHLKTAAKTSIKTAPRLLEDLIPKLRTGSSALPKRRSSPTVRLLCVRSCRRREGGQG*AWTSRLSFR*GSRTSGRKRTPTLWTLSKKTA**KITFLSRPLISSA*TSWIRSWSDPTGPAIRKRS*RTPP*RRLLVPPSAPSWMCFCRPQCF*RCPPPAS*STRRPPCLPRPPPWRSSVQPCCWRCCPSRCPSGWCSSWRTSWPAPSACWSGSPAGYHVTASGPSWCRFPHWPSTPMSPPNMRPTYTSQCSQARPR*LPSCTTVTSASSAPG*GPPSPPSWGPGRCSCSTSPCAQTVLY*LRPLTQYRISVPRGTRAIVRCRVTSGGPPASSARRWFSSSFSCSCWSGS*IANLKSATASTTTETWKRIFTAPRSRACGTRQTGC*GTSSPTTWLSS*RCPRPTPRTMTAEG*SSPASSTSASSTRRTTRAARSATGSSTSSSGTLTSS*ASRTTAASRRSRPSEPRTWRRQG*TPRRPRTAATRRSTCRSCSSSPRR*CAWWTTSTTTCCGSTSSSASASTMGPSRPGSSAPPSCCTTSGETPSTSPAGWTPPAWSAASR*AKRATAS*ARWAMTSTTEGP*MSRGKAR*RPTCTQSARITGSSHSTSCPSPQTSASRWMAASDGLPQTRLPTWCLLSSMWTRHLWVLTAARRPRMPTCPPRDRGRSPSKPKKGVDLAKP*RKTTVTKQE*KKPTNSPSSTFQRVC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder,Oesophagus no_match TRUE Bladder Urothelial Carcinoma BLADDER no_match 3929833 FALSE 4016967 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA TRUE CREB binding protein (CBP) 1 Yes ALL, AML, DLBCL, B-NHL leukaemia_lymphoma oncogene, TSG, fusion translocation, nonsense, frameshift, missense, other FALSE NA NA NA NA NA NA NA NA NA 31632 OSBPL2::RIPOR3-AS1 ENSG00000130703.17::ENSG00000234693.1 DMS79 SRR8615893 SRR8639151 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL2 ENSG00000130703.17 protein_coding + + chr20:62231922-62296213:+ chr20:62286711:+ chr20:60806978-60871269:+ chr20:60861767:+ RIPOR3-AS1 ENSG00000234693.1 lncRNA + + chr20:50645471-50662275:+ chr20:50653946:+ chr20:49262008-49278812:+ chr20:49270483:+ chr20:62287464,chr20:62287521,chr20:62287522 chr20:50652446,chr20:50652446,chr20:50652444 NA NA chr20:60862520,chr20:60862577,chr20:60862578 chr20:49268983,chr20:49268983,chr20:49268981 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 10 4 8.8 ONLY_REF_SPLICE YES_LDAS 0.1665 GT 1.7232 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31634 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1605 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59811670:+ chr17:57784553-57919616:+ chr17:57889031:+ chr17:59689873,chr17:59689873,chr17:59689870 chr17:59808922,chr17:59808924,chr17:59808909 NA NA chr17:57767234,chr17:57767234,chr17:57767231 chr17:57886283,chr17:57886285,chr17:57886270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2^Clathrin|984-1124|1.2e-37^TPR_8|1060-1079|0.83^TPR_14|1093-1118|0.71^Coatomer_WDAD|1094-1168|1.7e-08^TPR_8|1094-1107|4^ANAPC3|1095-1135|0.0042^TPR_19|1096-1130|0.013^TPR_14|1110-1136|0.2^TPR_1|1111-1136|0.00018^TPR_2|1111-1136|0.0018^TPR_8|1112-1136|0.0053^TPR_7|1113-1135|0.02^Clathrin|1134-1272|9e-36^TPR_14|1142-1172|0.031^TPR_7|1152-1170|0.05^TPR_2|1207-1224|3.4^ANAPC3|1226-1252|0.41^TPR_7|1230-1246|0.22^TPR_8|1230-1247|0.23^TPR_1|1231-1247|0.19^TPR_19|1231-1246|6.7^TPR_2|1231-1251|0.51^TPR_14|1232-1252|0.45^Coatomer_WDAD|1238-1310|0.0089^Clathrin|1281-1421|3.5e-33^TPR_14|1288-1326|0.023^TPR_7|1295-1316|0.016^TPR_8|1295-1318|0.46^TPR_8|1360-1383|1.9^TPR_1|1369-1380|2.5^Clathrin|1428-1570|7.4e-36^TPR_14|1540-1564|9.4^TPR_8|1608-1620|7 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 269 131 269 131 ONLY_REF_SPLICE YES_LDAS 4.5808 GT 1.8892 AG 1.5656 ENST00000700709.1 1-4842 ENST00000591877.2 796-1260 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]|[0]59660391-59660588[2]|[0]59661443-59661643[2]|[0]59663842-59663994[2]|[0]59664787-59664909[2]|[0]59666103-59666240[2]|[0]59666480-59666644[2]|[0]59666797-59666977[0]|[1]59668777-59668940[2]|[0]59673647-59673772[2]|[0]59674701-59674843[1]|[2]59676954-59677188[2]|[0]59679397-59679519[2]|[0]59680912-59681057[1]|[2]59681295-59681478[2]|[0]59681647-59681839[0]|[1]59682271-59682428[2]|[0]59682629-59682793[2]|[0]59682907-59683014[2]|[0]59683095-59683262[2]|[0]59683387-59683536[2]|[0]59683625-59683756[2]|[0]59683875-59683985[2]|[0]59685056-59685226[2]|[0]59685587-59685808[2]<==>chr17|+|[0]59811670-59811786[2]|[0]59817712-59817773[1]|[2]59834012-59834050[1]|[2]59838295-59838397[2]|[0]59839768-59839911[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaagttctgtcagtgtgtgtggaagaagaaaacataattccttacatcaccaatgttctacaaaatcctgatttggctctgagaatggctgtacgtaataacttagccggtgctgaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcggaggcagcaaaggtggctgctaatgcaccaaagggaattcttcgtactccagacactatccgtcggttccagagtgtcccagcccagccaggtcaaacttctcctctacttcagtactttggtatccttttggaccagggacagctcaacaaatacgaatccttagagctttgtaggcctgtacttcagcaagggcgaaaacagcttttggagaaatggttaaaagaagataagctggaatgttctgaagaactgggtgatcttgtgaaatctgtggaccctacattggcacttagtgtgtacctaagggctaacgtcccaaataaagtcattcagtgctttgcagaaacaggtcaagtccaaaagattgttttatatgctaaaaaagttggatacactccagattggatatttctgctgagaaatgtaatgcgaatcagtccagatcagggacagcagtttgcccaaatgttagttcaagatgaagagcctcttgctgacatcacacagattgtagatgtctttatggaatacaatctaattcagcagtgtactgcattcttgcttgatgctctgaagaataatcgcccatctgaaggtcctttacagacgcggttacttgagatgaaccttatgcatgcgcctcaagttgcagatgctattctaggcaatcagatgttcacacattatgaccgggctcatattgctcaactgtgtgaaaaggctggcctactgcagcgtgcattagaacatttcactgatttatatgatataaaacgtgcagtggttcacacccatcttcttaaccctgagtggttagtcaactactttggttccttatcagtagaagactccctagaatgtctcagagccatgctgtctgccaacatccgtcagaatctgcagatttgtgttcaggtggcttctaaatatcatgaacaactgtcaactcagtctctgattgaactttttgaatctttcaagagttttgaaggtctcttttattttctgggatccattgttaactttagccaggacccagatgtgcactttaaatatattcaggcagcttgcaagactgggcaaatcaaagaagtagaaagaatctgtagagaaagcaactgctacgatcctgagcgagtcaagaattttcttaaggaagcaaaactaacagatcagctaccacttatcattgtgtgtgatcgatttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatatagagatatatgtacagaaggtgaatccaagtcgacttcctgtagttattggaggattacttgatgttgactgttctgaagatgtcataaaaaacttgattcttgttgtaagaggtcaattctctactgatgagcttgttgctgaggttgaaaaaagaaacagattgaaactgcttctgccttggctagaggccagaattcatgagggctgtgaggagcctgctactcacaatgccttagccaaaatctacatagacagtaataacaacccggagagatttcttcgtgaaaatccctactatgacagtcgcgttgttggaaagtattgtgagaagagagatccacatctggcctgtgttgcttatgaacgtggccaatgtgatctggaacttattaatgtttgcaatgagaattccctcttcaaaagtctttctcgctacctggtacgtcgaaaggatccagaattgtggggcagcgtgctgctggaaagcaatccttacaggagacccctaattgaccaggttgtacaaacagctttgtctgagactcaggaccctgaagaagtgtcagtaactgtaaaggctttcatgactgcagaccttcctaatgaactcattgaactgctggagaaaattgtccttgataactctgtattcagtgaacacaggaatctgcaaaacctccttatcctcactgcaattaaggctgaccgtacacgtgttatggagtatattaaccgcctggataattatgatgccccagatattgccaatatcgccatcagcaatgagctgtttgaagaagcatttgccattttccggaaatttgatgtcaatacttcagcagttcaggtcttaattgagcatattggaaacttggatcgggcatatgagtttgctgaacgttgcaatgaacctgcggtctggagtcaacttgcaaaagcccagttgcagaaaggaatggtgaaagaagccattgattcttatatcaaagcagatgatccttcctcctacatggaagttgttcaggctgccaatactagtggaaactgggaagaactggtgaagtacttgcagatggcccgtaagaaggctcgagagtcctatgtggagacagaactgatattcgcactggctaaaacaaaccgccttgcagagttagaagaatttatcaatggaccaaataatgctcatatccaacaagttggtgaccgttgttatgatgaaaaaatgtatgatgctgctaagttgttgtacaataatgtttccaattttggacgtttggcatctaccctggttcacctgggtgaatatcaggcagctgttgatggggctaggaaagctaacagtactcgaacatggaaagaggtctgcttcgcctgtgtagatgggaaagaattccgtcttgctcagatgtgtggacttcatattgttgtacatgcagatgaattagaagaacttatcaactactatcaggatcgtggctattttgaagagctgatcaccatgttggaagcagcactgggacttgagcgagctcacatgggaatgtttactgaattagctattctatactctaaatttaagcctcagaaaatgagggagcacctggagctgttctggtctagagtgaatattcccaaggtgctaagagctgcagaacaagctcatctttgggcagaactggtgtttttgtatgacaagtatgaagaatatgataatgccataattaccatgatgaatcatccaactgatgcctggaaagaagggcaattcaaagatatcattaccaaggttgccaatgtggaactatactacagagcaatacagttctacttagaattcaagcctctgttgttaaatgatttgctgatggtgctgtctccacggttggatcacactcgtgcagtcaattatttcagcaaggttaaacagctaccactggtgaaaccgtatttgcgttcagttcagaaccataacaacaaatctgtgaatgaatcattgaacaatctttttattacagaagaagattatcaggctctgcgaacatcaatagatgcttatgacaactttgacaatatctcgcttgctcagcgtttggaaaaacatgaactcattgagttcaggagaattgctgcttatctcttcaaaggcaacaatcgctggaaacagagtgtagagctgtgcaagaaagacagcctttacaaggatgcaatgcagtatgcttctgaatctaaagatactgaattggctgaagaactcctgcagtggtttttgcaggaagaaaaaagagagtgctttggagcttgtctgtttacctgttacgatcttttaaggccagatgtcgtcctagaaactgcatggaggcacaatatcatggattttgccatgccctatttcatccaggtcatgaaggagtacttgacaaagATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGGCTGGAGGACAATGGCGCACTGCAACCTCCACCTCCCAGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGLEDNGALQPPPPSAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31635 LNPEP::CAST ENSG00000113441.16::ENSG00000153113.24 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LNPEP ENSG00000113441.16 protein_coding + + chr5:96935394-97037513:+ chr5:96936174:+ chr5:96271098-96373217:+ chr5:96271878:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96762274:+ chr5:95860971-96115299:+ chr5:96097978:+ chr5:96955387 chr5:96758472 NA NA chr5:96291091 chr5:96094176 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["LNPEP:Oncogene"];["CAST:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.16Mb] 239 36 239 36 ONLY_REF_SPLICE YES_LDAS 3.1493 GT 1.8892 AG 1.7819 ENST00000231368.10 1-19 ENST00000675179.1 1834-2376 chr5|+|[0]96936156-96936174[0]<==>chr5|+|[0]96762274-96762372[2]|[0]96765221-96765325[2]|[0]96766053-96766145[2]|[0]96767438-96767482[2]|[0]96767907-96767999[2]|[0]96770531-96770602[2]|[0]96771644-96771679[2] atggagcccttcaccaatgAAATTTGAAGATGCTAAACTTGCTGCTGCCATCTCTGAAGTGGTTTCCCAAACCCCAGCTTCAACGACCCAAGCTGGAGCCCCACCCCGTGATACCTCGCAGAGTGACAAAGACCTCGATGATGCCTTGGATAAACTCTCTGACAGTCTAGGACAAAGGCAGCCTGACCCAGATGAGAACAAACCAATGGAAGATAAAGTAAAGGAAAAAGCTAAAGCTGAACATAGAGACAAGCTTGGAGAAAGAGATGACACTATCCCACCTGAATACAGACATCTCCTGGATGATAATGGACAGGACAAACCAGTGAAGCCACCTACAAAGAAATCAGAGGATTCAAAGAAACCTGCAGATGACCAAGACCCCATTGATGCTCTCTCAGGAGATCTGGACAGCTGTCCCTCCACTACAGAAACCTCACAGAACACAGCAAAGGATAAGTGCAAGAAGGCTGCTTCCAGCTCCAAAGCACCTAAGAATGGAGGTAAAGCGAAGGATTCAGCAAAGACAACAGAGGAAACTTCCAAGCCAAAAGATGACTAA MEPFTNEI*RC*TCCCHL*SGFPNPSFNDPSWSPTP*YLAE*QRPR*CLG*TL*QSRTKAA*PR*EQTNGR*SKGKS*S*T*RQAWRKR*HYPT*IQTSPG**WTGQTSEATYKEIRGFKETCR*PRPH*CSLRRSGQLSLHYRNLTEHSKG*VQEGCFQLQST*EWR*SEGFSKDNRGNFQAKR*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 96271878 TRUE 96011243 FALSE PARTIALLY CDS-5UTR TRUE Breast BREAST no_match 96936174 TRUE 96675539 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31636 IPO7::MYH9 ENSG00000205339.10::ENSG00000100345.23 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1606 FALSE NA FALSE NA IPO7 ENSG00000205339.10 protein_coding + + chr11:9384652-9448127:+ chr11:9440661:+ chr11:9406199-9469674:+ chr11:9462208:+ MYH9 ENSG00000100345.23 protein_coding - - chr22:36281280-36388010:- chr22:36297014:- chr22:36677326-36784055:- chr22:36693060:- chr11:9441681 chr22:36297267 NA NA chr11:9463228 chr22:36693313 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame IBN_N|22-101|1.8e-24^RRN3|32-61|0.15^Xpo1|103-229|9.6e-07^DUF1539|106-134|0.13^RIX1|128-151|0.27^Cse1|200-440|5.9e-12^DUF1539|224-246|1.1^DUF3730|300-328|3.1^Xpo1|301-333|0.16^RRN3|381-438|0.00031^DUF1539|403-440|0.017^Xpo1|408-451|0.93^IBN_N|410-448|2.3^IBN_N|507-531|0.56^Merozoite_SPAM|521-559|0.38^RIX1|526-582|0.00089^Xpo1|527-585|0.45^DUF1539|533-576|0.38^DUF3730|535-676|2.9e-08^IBN_N|543-556|2.1^Cse1|559-616|0.76^His_kinase|560-592|1.6^His_kinase|612-655|1.2^Cse1|688-713|0.27^RIX1|738-788|0.5^His_kinase|793-805|0.0055^Merozoite_SPAM|845-940|7e-06^His_kinase|856-881|3.5^RRN3|881-942|0.054^DUF2457|881-966|0.0028^DUF1539|925-985|1.8 none ["MYH9:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr22] 134 98 134 98 ONLY_REF_SPLICE YES_LDAS 2.6569 GT 1.7819 AG 1.7056 ENST00000379719.8 1-2902 ENST00000216181.11 3101-5883 chr11|+|[0]9384764-9384847[2]|[0]9403290-9403371[0]|[1]9408486-9408639[1]|[2]9409928-9410086[1]|[2]9414255-9414411[2]|[0]9417059-9417148[2]|[0]9420411-9420505[1]|[2]9420614-9420698[2]|[0]9423006-9423140[2]|[0]9423777-9423876[0]|[1]9424914-9424990[2]|[0]9425146-9425262[2]|[0]9428540-9428629[2]|[0]9429031-9429196[0]|[1]9429674-9429834[2]|[0]9430875-9431003[2]|[0]9433570-9433636[0]|[1]9433721-9433846[0]|[1]9434934-9435031[2]|[0]9436271-9436366[2]|[0]9437754-9437974[1]|[2]9438080-9438285[0]|[1]9440455-9440661[0]<==>chr22|-|[2]36282668-36282785[2]|[1]36284093-36284265[0]|[2]36284403-36284511[2]|[1]36285121-36285329[0]|[2]36285658-36285781[2]|[1]36285865-36285953[0]|[2]36286718-36286846[0]|[2]36288252-36288413[0]|[2]36288727-36288939[0]|[2]36289085-36289297[0]|[2]36291986-36292234[0]|[2]36293329-36293481[0]|[2]36293759-36293863[0]|[2]36294092-36294298[0]|[2]36294932-36295076[2]|[1]36295505-36295717[2]|[1]36296843-36297014[1] atggaccccaacaccattatcgaggccctgcggggcactatggacccagccctgcgtgaggccgcggagcgccagctcaatgaagcacacaagtctctgaattttgtctcaacactgctccagattactatgtcggaacagctggatttacctgtgagacaggcaggtgttatctatctgaaaaatatgataacacagtattggcctgatcgagaaacagcaccaggggatatatccccttatactattccagaagaagatcgccattgtattcgagaaaatattgtagaagccattatccattctcctgagctcatcagggtacagcttactacatgcattcatcacatcatcaaacatgattatccaagccgctggactgccattgtggacaaaattggcttttatcttcagtccgataacagtgcttgttggctaggaattcttctttgcctttatcagcttgtgaaaaattatgagtataaaaaaccagaggagcggagtccattggtagcagcaatgcagcattttctgccagttctaaaggatcgttttatccagcttctttctgaccagtctgatcagtctgtcctcatccagaaacagatattcaagatcttctatgctcttgttcagtatacactaccactggaactgataaaccaacagaacctgacagaatggatagaaattttaaagactgttgtgaacagggatgtacctaatgaaacacttcaagttgaagaagatgatcgacctgagttaccatggtggaaatgcaagaagtgggccttacatattttagcaagactttttgaaagatatggaagccctggcaatgtttccaaggagtataatgaatttgctgaagtatttctgaaggcatttgctgttggtgtccagcaagttttattgaaggtgttatatcagtacaaggagaagcaatatatggctcctcgagttttacaacagacattaaattatattaatcaaggagtttctcatgctctcacctggaagaatctgaagccccatatacaaggcattatccaagatgttatttttccattgatgtgctatacagatgctgatgaggaactttggcaagaagacccttacgaatatatacgcatgaagtttgatgtgtttgaagatttcatttctcctaccactgctgcccagacacttttgtttacagcctgtagtaagaggaaagaggtactgcaaaagactatgggattttgttaccagattcttacagaaccaaatgctgaccctcgaaaaaaagatggagccctgcatatgattggctctttagctgaaatacttctgaagaaaaagatctataaagatcagatggaatacatgttgcagaatcatgtattccctctcttcagcagtgaactaggctacatgagagcaagggcttgctgggtacttcactatttttgtgaagtgaagttcaaaagtgatcagaaccttcaaacagccttagagctaacaagaagatgtctgattgatgatagagaaatgcctgtgaaagtggaagctgccattgcccttcaagtattgatcagcaatcaagaaaaagctaaagaatatatcacaccattcatcagacctgtaatgcaggctcttcttcacattataagagaaacagaaaatgatgaccttaccaatgtaattcagaaaatgatctgtgaatatagtgaagaagttactcctattgcagtagaaatgacacaacatttggcaatgacatttaaccaagtaatccagacggggccagatgaagaaggtagtgatgacaaagcagttactgctatgggaattctgaatacaattgatacacttcttagtgtagttgaagatcataaagagataacccaacagcttgagggaatctgcttacaggtcattggtactgttttacaacagcatgtcttagaattctatgaggagatcttctctttagcgcacagtttgacatgtcaacaagtgtctccacagatgtggcagctactaccccttgtatttgaagtctttcagcaagatggctttgattactttacagatatgatgcccctccttcataattatgtaacagttgatacagacacacttctgtctgacaccaagtatcttgaaatgatatacagtatgtgcaaaaaggttcttacaggagttgcaggagaagatgcagagtgtcatgcagcaaaattgttagaggtcatcattctgcagtgcaaagggcgtggcattgaccagtgcattcccttattcgtggaagcagccttagaaagactgacaagagaggttaagacaagtgaacttcgaactatgtgtctgcaagttgcaattgcagctttgtattataatccacacctactactcaataccttagaaaatcttcgcttccctaataatgttgaaccagttacaaatcattttattacacagtggcttaatgatgttgactgtttcttggggcttcatgacagaaagatgtgtgttctcggactctgtgctcttattgatatggaacagataccccaagttttaaatcaggtttctggacagattttgccggcttttatccttttatttaacggattgaaaagagcatatgcctgccatgcagaacatgagaatgacagtgatgatgatgatgaagctgaagatgatgatgaaaccgaggaactggggagtgatgaagatgatattgatgaagatgggcaagaatatttggagattctggctaagcaggctggtgaagatggagatgatgaagattgggaagaagatgatgctgaagagactgctctggaaggctattccacaatcattgatgatgaagataaccctgttgatgagtatcagatatttaaagctatctttcaaaAGCGCCTCCGCAGGGAGGAGAAGCAGCGACAGGAGCTGGAGAAGACCCGCCGGAAGCTGGAGGGAGACTCCACAGACCTCAGCGACCAGATCGCCGAGCTCCAGGCCCAGATCGCGGAGCTCAAGATGCAGCTGGCCAAGAAAGAGGAGGAGCTCCAGGCCGCCCTGGCCAGAGTGGAAGAGGAAGCTGCCCAGAAGAACATGGCCCTCAAGAAGATCCGGGAGCTGGAATCTCAGATCTCTGAACTCCAGGAAGACCTGGAGTCTGAGCGTGCTTCCAGGAATAAAGCTGAGAAGCAGAAACGGGACCTTGGGGAAGAGCTAGAGGCTCTGAAAACAGAGTTGGAGGACACGCTGGATTCCACAGCTGCCCAGCAGGAGCTCAGGTCAAAACGTGAGCAGGAGGTGAACATCCTGAAGAAGACCCTGGAGGAGGAGGCCAAGACCCACGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCCGTGGAGGAGCTGGCGGAGCAGCTGGAGCAGACGAAGCGGGTGAAAGCAAACCTCGAGAAGGCAAAGCAGACTCTGGAGAACGAGCGGGGGGAGCTGGCCAACGAGGTGAAGGTGCTGCTGCAGGGCAAAGGGGACTCGGAGCACAAGCGCAAGAAAGTGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAGTTCAACGAGGGAGAGCGCGTGCGCACAGAGCTGGCCGACAAGGTCACCAAGCTGCAGGTGGAGCTGGACAACGTGACCGGGCTTCTCAGCCAGTCCGACAGCAAGTCCAGCAAGCTCACCAAGGACTTCTCCGCGCTGGAGTCCCAGCTGCAGGACACTCAGGAGCTGCTGCAGGAGGAGAACCGGCAGAAGCTGAGCCTGAGCACCAAGCTCAAGCAGGTGGAGGACGAGAAGAATTCCTTCCGGGAGCAGCTGGAGGAGGAGGAGGAGGCCAAGCACAACCTGGAGAAGCAGATCGCCACCCTCCATGCCCAGGTGGCCGACATGAAAAAGAAGATGGAGGACAGTGTGGGGTGCCTGGAAACTGCTGAGGAGGTGAAGAGGAAGCTCCAGAAGGACCTGGAGGGCCTGAGCCAGCGGCACGAGGAGAAGGTGGCCGCCTACGACAAGCTGGAGAAGACCAAGACGCGGCTGCAGCAGGAGCTGGACGACCTGCTGGTGGACCTGGACCACCAGCGCCAGAGCGCGTGCAACCTGGAGAAGAAGCAGAAGAAGTTTGACCAGCTCCTGGCGGAGGAGAAGACCATCTCTGCCAAGTATGCAGAGGAGCGCGACCGGGCTGAGGCGGAGGCCCGAGAGAAGGAGACCAAGGCTCTGTCGCTGGCCCGGGCCCTGGAGGAAGCCATGGAGCAGAAGGCGGAGCTGGAGCGGCTCAACAAGCAGTTCCGCACGGAGATGGAGGACCTTATGAGCTCCAAGGATGATGTGGGCAAGAGTGTCCACGAGCTGGAGAAGTCCAAGCGGGCCCTAGAGCAGCAGGTGGAGGAGATGAAGACGCAGCTGGAAGAGCTGGAGGACGAGCTGCAGGCCACCGAAGATGCCAAGCTGCGGTTGGAGGTCAACCTGCAGGCCATGAAGGCCCAGTTCGAGCGGGACCTGCAGGGCCGGGACGAGCAGAGCGAGGAGAAGAAGAAGCAGCTGGTCAGACAGGTGCGGGAGATGGAGGCAGAGCTGGAGGACGAGAGGAAGCAGCGCTCGATGGCAGTGGCCGCCCGGAAGAAGCTGGAGATGGACCTGAAGGACCTGGAGGCGCACATCGACTCGGCCAACAAGAACCGGGACGAAGCCATCAAACAGCTGCGGAAGCTGCAGGCCCAGATGAAGGACTGCATGCGCGAGCTGGATGACACCCGCGCCTCTCGTGAGGAGATCCTGGCCCAGGCCAAAGAGAACGAGAAGAAGCTGAAGAGCATGGAGGCCGAGATGATCCAGTTGCAGGAGGAACTGGCAGCCGCGGAGCGTGCCAAGCGCCAGGCCCAGCAGGAGCGGGATGAGCTGGCTGACGAGATCGCCAACAGCAGCGGCAAAGGAGCCCTGGCGTTAGAGGAGAAGCGGCGTCTGGAGGCCCGCATCGCCCAGCTGGAGGAGGAGCTGGAGGAGGAGCAGGGCAACACGGAGCTGATCAACGACCGGCTGAAGAAGGCCAACCTGCAGATCGACCAGATCAACACCGACCTGAACCTGGAGCGCAGCCACGCCCAGAAGAACGAGAATGCTCGGCAGCAGCTGGAACGCCAGAACAAGGAGCTTAAGGTCAAGCTGCAGGAGATGGAGGGCACTGTCAAGTCCAAGTACAAGGCCTCCATCACCGCCCTCGAGGCCAAGATTGCACAGCTGGAGGAGCAGCTGGACAACGAGACCAAGGAGCGCCAGGCAGCCTGCAAACAGGTGCGTCGGACCGAGAAGAAGCTGAAGGATGTGCTGCTGCAGGTGGATGACGAGCGGAGGAACGCCGAGCAGTACAAGGACCAGGCCGACAAGGCATCTACCCGCCTGAAGCAGCTCAAGCGGCAGCTGGAGGAGGCCGAAGAGGAGGCCCAGCGGGCCAACGCCTCCCGCCGGAAACTGCAGCGCGAGCTGGAGGACGCCACTGAGACGGCCGATGCCATGAACCGCGAAGTCAGCTCCCTAAAGAACAAGCTCAGGCGCGGGGACCTGCCGTTTGTCGTGCCCCGCCGAATGGCCCGGAAAGGCGCCGGGGATGGCTCCGACGAAGAGGTAGATGGCAAAGCGGATGGGGCTGAGGCCAAACCTGCCGAATAA MDPNTIIEALRGTMDPALREAAERQLNEAHKSLNFVSTLLQITMSEQLDLPVRQAGVIYLKNMITQYWPDRETAPGDISPYTIPEEDRHCIRENIVEAIIHSPELIRVQLTTCIHHIIKHDYPSRWTAIVDKIGFYLQSDNSACWLGILLCLYQLVKNYEYKKPEERSPLVAAMQHFLPVLKDRFIQLLSDQSDQSVLIQKQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPWWKCKKWALHILARLFERYGSPGNVSKEYNEFAEVFLKAFAVGVQQVLLKVLYQYKEKQYMAPRVLQQTLNYINQGVSHALTWKNLKPHIQGIIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKRKEVLQKTMGFCYQILTEPNADPRKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQTGPDEEGSDDKAVTAMGILNTIDTLLSVVEDHKEITQQLEGICLQVIGTVLQQHVLEFYEEIFSLAHSLTCQQVSPQMWQLLPLVFEVFQQDGFDYFTDMMPLLHNYVTVDTDTLLSDTKYLEMIYSMCKKVLTGVAGEDAECHAAKLLEVIILQCKGRGIDQCIPLFVEAALERLTREVKTSELRTMCLQVAIAALYYNPHLLLNTLENLRFPNNVEPVTNHFITQWLNDVDCFLGLHDRKMCVLGLCALIDMEQIPQVLNQVSGQILPAFILLFNGLKRAYACHAEHENDSDDDDEAEDDDETEELGSDEDDIDEDGQEYLEILAKQAGEDGDDEDWEEDDAEETALEGYSTIIDDEDNPVDEYQIFKAIFQKRLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQKHSQAVEELAEQLEQTKRVKANLEKAKQTLENERGELANEVKVLLQGKGDSEHKRKKVEAQLQELQVKFNEGERVRTELADKVTKLQVELDNVTGLLSQSDSKSSKLTKDFSALESQLQDTQELLQEENRQKLSLSTKLKQVEDEKNSFREQLEEEEEAKHNLEKQIATLHAQVADMKKKMEDSVGCLETAEEVKRKLQKDLEGLSQRHEEKVAAYDKLEKTKTRLQQELDDLLVDLDHQRQSACNLEKKQKKFDQLLAEEKTISAKYAEERDRAEAEAREKETKALSLARALEEAMEQKAELERLNKQFRTEMEDLMSSKDDVGKSVHELEKSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNLQAMKAQFERDLQGRDEQSEEKKKQLVRQVREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIKQLRKLQAQMKDCMRELDDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERAKRQAQQERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRLKKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKVKLQEMEGTVKSKYKASITALEAKIAQLEEQLDNETKERQAACKQVRRTEKKLKDVLLQVDDERRNAEQYKDQADKASTRLKQLKRQLEEAEEEAQRANASRRKLQRELEDATETADAMNREVSSLKNKLRRGDLPFVVPRRMARKGAGDGSDEEVDGKADGAEAKPAE* FALSE FALSE NA NA TRUE hsa-mir-6819 chr22:36286847-36286907:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 9, non-muscle 1 ALCL leukaemia_lymphoma TSG, fusion translocation 31637 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1607 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44359579:- chr17:42430583-42441221:- chr17:42436947:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FAM171A1-2-B_N|41-295|1.9e-124^FAM163|297-348|5e-05^Adeno_E3_CR2|322-348|6.3e-06^FAM171A1-2-B_C-PARTIAL|383-439~|1.6e-156 EF-hand_9-PARTIAL|~164-191|0.00011^EF-hand_7-PARTIAL|~164-193|2.4e-07^AIF-1-PARTIAL|~164-195|5.2e-05^EF-hand_8-PARTIAL|~164-187|0.0048^EF-hand_6|180-192|0.8^EF-hand_1|180-194|0.02 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.84Mb] 73 54 73 29.84 ONLY_REF_SPLICE YES_LDAS 1.1777 GT 1.7465 AG 1.9656 ENST00000293443.12 1-439 ENST00000393450.5 164-594 chr17|-|[0]44359579-44359671[1]|[0]44359905-44360132[1]|[0]44363597-44363714[0]<==>chr17|+|[1]47219904-47220053[0]|[1]47221682-47221855[0]|[1]47222380-47222457[0]|[1]47223014-47223042[2] atgccgccggcgagtggccccagcgtcctcgcgcggctgttgccgctgctggggctgctgctcggcagcgcctcccgggctcccggcaagtcgccgccggagccccccagcccgcaggagatcctgatcaaggtgcaggtgtatgtgagcggggagctggtgcccctggcccgggcctcagtggatgtgtttgggaaccggactctgctggcagctggcaccacagactcagagggtgtggccaccctgcccctcagttatcgcttgggcacctgggtgctggtcactgctgcccgccctggcttcctcaccaactctgtgccctggcgtgttgacaagctgcccttgtatgcgtctgtcagcctctacctgctccctgagcggccggccacgctcatcctctatgaggacctggtgcacattctcctaggctctcccgAGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAACCCTACCAATGCCGAGGTGCTGCGTGTGCTGGGCAAGCCCAAGCCTGAAGAGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTGGAGGGCCTGCGTGTCTTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCTTCGGCACGTCCTTGCCACCCTGGGAGAGAAGATGACTGAGGCTGAAGTGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGCATCAATTATGAAGCCTTTGTCAAGCACATCATGTCAGGGTGA MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31638 TSPAN4::RPLP2 ENSG00000214063.12::ENSG00000177600.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1614 FALSE NA FALSE NA TSPAN4 ENSG00000214063.12 protein_coding + + chr11:842812-867116:+ chr11:850367:+ chr11:842812-867116:+ chr11:850367:+ RPLP2 ENSG00000177600.9 protein_coding + + chr11:809965-812880:+ chr11:812535:+ chr11:809965-812880:+ chr11:812535:+ chr11:851681 chr11:811731 NA NA chr11:851681 chr11:811731 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tetraspanin|101-321|3.6e-61 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.03Mb];LOCAL_REARRANGEMENT:+:[29928] 63 61 63 61 ONLY_REF_SPLICE YES_LDAS 1.4201 GT 1.9086 AG 1.9086 ENST00000527644.2 1-339 ENST00000321153.9 173-348 chr11|+|[0]850029-850367[2]<==>chr11|+|[1]812535-812633[0]|[1]812760-812836[2] atgcgccgctccagcacggacgagtccacgtaccggcgcagcccctctccggagggcaaggagccggacttcgcgcgcggcggccccttccggcgctacagcagcctatacgggcgcgcgggcggcggggacgccgggggctccttcttcggcctgcacgcgaaccccggccccaaggcggcccaggcgcgctacacgtcgcccaagggcaacaagtacgtggttttctacctggacctctccttcatcttcctcctagaactgaagcgctgcggcatggcgcgcgcctgcctccaggccgtcaagtacctcatgttcgccttcaacctgctcttctggGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCTCTGCTGCCCCAGGCTCTGCAGCCCCTGCTGCTGGTTCTGCCCCTGCTGCAGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGATGATGACATGGGATTTGGCCTTTTTGATTAA MRRSSTDESTYRRSPSPEGKEPDFARGGPFRRYSSLYGRAGGGDAGGSFFGLHANPGPKAAQARYTSPKGNKYVVFYLDLSFIFLLELKRCGMARACLQAVKYLMFAFNLLFWVLASLPVYLLVGL*PSLLPQALQPLLLVLPLLQQRRRKMRRRRSLKSQMMTWDLAFLI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31640 FRYL::GABRA4 ENSG00000075539.15::ENSG00000109158.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1610 FALSE NA FALSE NA FRYL ENSG00000075539.15 protein_coding - - chr4:48497357-48780322:- chr4:48780078:- chr4:48499374-48782339:- chr4:48782095:- GABRA4 ENSG00000109158.11 protein_coding - - chr4:46918900-46993581:- chr4:46928755:- chr4:46920917-46995598:- chr4:46930772:- chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488,chr4:48766488 chr4:46941853,chr4:46941866,chr4:46941873,chr4:46941900,chr4:46941902,chr4:46941904 NA NA chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505,chr4:48768505 chr4:46943870,chr4:46943883,chr4:46943890,chr4:46943917,chr4:46943919,chr4:46943921 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FRYL:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:1.50Mb] 51 33 51 33 ONLY_REF_SPLICE YES_LDAS 0.9619 GT 1.7968 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31641 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1608 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44356430:- chr17:42430583-42441221:- chr17:42433798:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FAM171A1-2-B_N|41-295|1.9e-124^FAM163|297-348|5e-05^Adeno_E3_CR2|322-348|6.3e-06^FAM171A1-2-B_C-PARTIAL|383-598~|1.6e-156 EF-hand_9-PARTIAL|~164-191|0.00011^EF-hand_7-PARTIAL|~164-193|2.4e-07^AIF-1-PARTIAL|~164-195|5.2e-05^EF-hand_8-PARTIAL|~164-187|0.0048^EF-hand_6|180-192|0.8^EF-hand_1|180-194|0.02 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.84Mb] 39 74 39 44.12 ONLY_REF_SPLICE YES_LDAS 0.9519 GT 1.8892 AG 1.9656 ENST00000293443.12 1-598 ENST00000393450.5 164-594 chr17|-|[0]44356430-44356588[1]|[0]44359579-44359671[1]|[0]44359905-44360132[1]|[0]44363597-44363714[0]<==>chr17|+|[1]47219904-47220053[0]|[1]47221682-47221855[0]|[1]47222380-47222457[0]|[1]47223014-47223042[2] atgccgccggcgagtggccccagcgtcctcgcgcggctgttgccgctgctggggctgctgctcggcagcgcctcccgggctcccggcaagtcgccgccggagccccccagcccgcaggagatcctgatcaaggtgcaggtgtatgtgagcggggagctggtgcccctggcccgggcctcagtggatgtgtttgggaaccggactctgctggcagctggcaccacagactcagagggtgtggccaccctgcccctcagttatcgcttgggcacctgggtgctggtcactgctgcccgccctggcttcctcaccaactctgtgccctggcgtgttgacaagctgcccttgtatgcgtctgtcagcctctacctgctccctgagcggccggccacgctcatcctctatgaggacctggtgcacattctcctaggctctcccggtgcccgctcccagcccttggtgcagttccagcgccgggctgcccgcctgcctgtcagctccacctacagccagctctgggcgtcacttacgcctgccagcacccagcaggaaatgcgggctttccctgccttcctgggcactgaggcctccagctcagAGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAACCCTACCAATGCCGAGGTGCTGCGTGTGCTGGGCAAGCCCAAGCCTGAAGAGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTGGAGGGCCTGCGTGTCTTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCTTCGGCACGTCCTTGCCACCCTGGGAGAGAAGATGACTGAGGCTGAAGTGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGCATCAATTATGAAGCCTTTGTCAAGCACATCATGTCAGGGTGA MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31642 RGS17::MTRF1L ENSG00000091844.8::ENSG00000112031.16 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA RGS17 ENSG00000091844.8 protein_coding - - chr6:153004459-153131282:- chr6:153131124:- chr6:153325594-153452417:- chr6:153452259:- MTRF1L ENSG00000112031.16 protein_coding - - chr6:152987362-153002709:- chr6:152998629:- chr6:153308497-153323844:- chr6:153319764:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.00Mb];NEIGHBORS[1774] 20 10 20 10 ONLY_REF_SPLICE YES_LDAS 0.3435 GT 1.6895 AG 1.5301 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31644 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4840 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85556233,chr1:85556236 chr1:85390503,chr1:85390503 NA NA chr1:86021916,chr1:86021919 chr1:85856186,chr1:85856186 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 22 17 11 ONLY_REF_SPLICE YES_LDAS 0.3207 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31646 FCGRT::RPL13A ENSG00000104870.13::ENSG00000142541.18 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FCGRT ENSG00000104870.13 protein_coding + + chr19:49506816-49526428:+ chr19:49514486:+ chr19:50010073-50029685:+ chr19:50017743:+ RPL13A ENSG00000142541.18 protein_coding + + chr19:49487510-49493057:+ chr19:49489850:+ chr19:49990767-49996314:+ chr19:49993107:+ chr19:49515023,chr19:49515021 chr19:49488603,chr19:49488598 NA NA chr19:50018280,chr19:50018278 chr19:49991860,chr19:49991855 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MHC_I|28-197|8.9e-47^Ig_3|77-87|0.95^MHC_I_3|100-194|1.2e-06^Ig_3|203-278|4.3e-05^C1-set|217-282|1.6e-12 Ribosomal_L13-PARTIAL|~12-116|3.9e-21^SLT_L|138-162|9.4e-06^Ribosomal_L13|168-184|0.2 INTRACHROMOSOMAL[chr19:0.01Mb];LOCAL_REARRANGEMENT:+:[14508] 12 5 10.5 4.5 ONLY_REF_SPLICE YES_LDAS 0.1717 GT 1.7968 AG 1.7819 ENST00000221466.10 1-601 ENST00000467825.2 12-632 chr19|+|[0]49513401-49513473[0]|[1]49513882-49514133[0]|[1]49514211-49514486[0]<==>chr19|+|[0]49489850-49489922[0]|[1]49490232-49490297[0]|[1]49490475-49490600[0]|[1]49490779-49490864[2]|[0]49491040-49491099[2]|[0]49491425-49491547[2]|[0]49491729-49491815[2] atgggggtcccgcggcctcagccctgggcgctggggctcctgctctttctccttcctgggagcctgggcgcagaaagccacctctccctcctgtaccaccttaccgcggtgtcctcgcctgccccggggactcctgccttctgggtgtccggctggctgggcccgcagcagtacctgagctacaatagcctgcggggcgaggcggagccctgtggagcttgggtctgggaaaaccaggtgtcctggtattgggagaaagagaccacagatctgaggatcaaggagaagctctttctggaagctttcaaagctttggggggaaaaggtccctacactctgcagggcctgctgggctgtgaactgggccctgacaacacctcggtgcccaccgccaagttcgccctgaacggcgaggagttcatgaatttcgacctcaagcagggcacctggggtggggactggcccgaggccctggctatcagtcagcggtggcagcagcaggacaaggcggccaacaaggagctcaccttcctgctattctcctgcccgcaccgcctgcgggagcacctggagaggggccgcggaaacctggagtggaaggGTCCTGGTGCTTGATGGTCGAGGCCATCTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGCAATTTCTACAGAAACAAGTTGAAGTACCTGGCTTTCCTCCGCAAGCGGATGAACACCAACCCTTCCCGAGGCCCCTACCACTTCCGGGCCCCCAGCCGCATCTTCTGGCGGACCGTGCGAGGTGAGCAGAGCGTGGGGACTGCAGGTATGCTGCCCCACAAAACCAAGCGAGGCCAGGCCGCTCTGGACCGTCTCAAGGTGTTTGACGGCATCCCACCGCCCTACGACAAGAAAAAGCGGATGGTGGTTCCTGCTGCCCTCAAGGTCGTGCGTCTGAAGCCTACAAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGGAAGTACCAGGCAGTGACAGCCACCCTGGAGGAGAAGAGGAAAGAGAAAGCCAAGATCCACTACCGGAAGAAGAAACAGCTCATGAGGCTACGGAAACAGGCCGAGAAGAACGTGGAGAAGAAAATTGACAAATACACAGAGGTCCTCAAGACCCACGGACTCCTGGTCTGA MGVPRPQPWALGLLLFLLPGSLGAESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLRGEAEPCGAWVWENQVSWYWEKETTDLRIKEKLFLEAFKALGGKGPYTLQGLLGCELGPDNTSVPTAKFALNGEEFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFLLFSCPHRLREHLERGRGNLEWKGPGA*WSRPSPGPPGGHRG*TGTAGPEGGGRTL*RHQHFWQFLQKQVEVPGFPPQADEHQPFPRPLPLPGPQPHLLADRAR*AERGDCRYAAPQNQARPGRSGPSQGV*RHPTALRQEKADGGSCCPQGRASEAYKKVCLSGAPGSRGWLEVPGSDSHPGGEEERESQDPLPEEETAHEATETGREERGEEN*QIHRGPQDPRTPGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31647 PPP1R12A::PAWR ENSG00000058272.19::ENSG00000177425.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1615 FALSE NA FALSE NA PPP1R12A ENSG00000058272.19 protein_coding - - chr12:79773563-79935460:- chr12:79795638:- chr12:80167343-80329240:- chr12:80189418:- PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613609:- chr12:79968759-80084744:- chr12:80007389:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|44-88|1.9e-09^Ank_3|44-67|0.0029^Ank|46-70|0.00024^Ank_2|46-134|4.3e-24^Ank_5|47-78|6.6e-05^Ank_5|59-111|5.8e-13^Ank|72-104|1.1e-11^Ank_3|72-100|4e-10^Ank_4|74-126|5.7e-18^Ank|106-136|1.6e-09^Ank_5|109-146|1.4e-10^Ank_3|109-132|4.6e-05^Ank_4|119-146|7.7e-05^Ank_2|135-158|0.13^Ank|139-157|0.056^Ank_3|139-166|2.8^Ank_2|188-259|6.5e-18^Ank_5|197-237|1.6e-10^Ank|199-229|1.5e-10^Ank_3|199-227|5.9e-07^Ank_4|200-251|1.6e-16^Ank|231-263|6e-09^Ank_5|231-272|0.00068^Ank_3|231-256|1.2e-05^Ank_4|234-272|6.2e-07^PRKG1_interact|281-347|6^PRKG1_interact|331-361|6^PRKG1_interact|474-522|0.65^PRKG1_interact|698-751|6^PRKG1_interact|862-862|6^PRKG1_interact|931-1030|9.1e-40 none ["PAWR:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[82466] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.126 GT 1.9086 AG 1.7819 ENST00000261207.9 1-2583 ENST00000328827.9 649-1023 chr12|-|[2]79795638-79795759[1]|[0]79796782-79796950[0]|[2]79797195-79797395[0]|[2]79798494-79798584[2]|[1]79805592-79805768[2]|[1]79806166-79806333[2]|[1]79807226-79807330[2]|[1]79808483-79808577[0]|[2]79809795-79810010[0]|[2]79817394-79817518[1]|[0]79820774-79820931[2]|[1]79821078-79821166[0]|[2]79822116-79822190[0]|[2]79828320-79828464[2]|[1]79832332-79832491[1]|[0]79845302-79845420[2]|[1]79872808-79872938[0]|[2]79934695-79934931[0]<==>chr12|-|[2]79592607-79592693[0]|[2]79594329-79594433[0]|[2]79596511-79596658[2]|[1]79613575-79613609[0] atgaagatggcggacgcgaagcagaagcggaacgagcagctgaaacgctggatcggctccgagacggacctcgagcctccggtggtgaagcgccagaagaccaaggtgaagttcgacgatggcgccgtcttcctggctgcttgctccagcggcgacacggacgaggtcctcaagctgctgcaccgcggcgccgacatcaattacgccaatgtggacggactcactgccctgcaccaggcttgcattgatgacaatgttgatatggtgaagtttctggtagaaaatggagcaaatattaatcaacctgataatgaaggctggataccactacatgcagcagcttcctgtggatatcttgatattgcagagtttttgattggtcaaggagcacatgtaggggctgtcaacagtgaaggagatacacctttagatattgcggaggaggaggcaatggaagagctacttcaaaatgaagttaatcggcaaggggttgatatagaagcagctcgaaaggaagaagaacggatcatgcttagagatgccaggcagtggctaaatagtggtcatataaatgatgtccggcatgcaaaatctggaggtacagcacttcacgttgcagctgctaaaggctatacggaagttttaaaacttttaatacaggcaggctatgatgttaatattaaagactatgatggctggacacctcttcatgctgcagctcattggggtaaagaagaagcatgtcgaattttagtggacaatctgtgtgatatggagatggtcaacaaagtgggccaaacagcctttgatgtagcagatgaagacattttaggatatttagaagagttgcaaaagaaacaaaatctgctccatagtgaaaaacgggacaagaaatctccactaattgaatcaacagcaaatatggacaataatcagtcacagaagacctttaaaaacaaagagacgttgattattgaaccagagaaaaatgcatcccgtattgaatctctggaacaagaaaaggttgatgaagaagaagaaggaaagaaggatgagtctagctgctctagtgaagaagatgaggaagatgactcggaatcagaagctgaaacagataagacaaaacccctggcttctgtaactaatgccaacacttctagtacacaagcagctcctgtagctgttacaacacctactgtgtcatcaggtcaagcaacacctacatcacctattaaaaagtttccaaccacagctacaaaaatttctcccaaagaagaagagagaaaagatgagtctcctgcaacttggaggttaggacttagaaagacgggcagctatggtgcacttgctgaaatcacagcatctaaagagggtcagaaagaaaaagatactgcaggtgttacacgttcagcttcaagtcccagactttcctcctctttggataataaagaaaaggagaaagatagtaaaggaactaggcttgcatatgttgcacctacaataccaagacgactagccagtacatctgacattgaagagaaagaaaacagagattcttcaagtttgcgaacaagtagttcatatacaaggagaaaatgggaagatgatcttaaaaaaaatagctcagttaatgaaggatcaacgtatcataaaagttgctcctttggtagaagacaagatgatttgattagttctagtgttccaagcaccacatcaacaccaacagttacctctgcagctgggcttcagaaaagcctgctttccagcacaagcactactacaaagattacaacgggttcttcctcagcaggcacacaaagcagtacctcaaatcgtttgtgggctgaggatagtactgagaaagaaaaggacagtgttcctacggcagtgaccattcctgttgctccaactgttgtaaatgctgcagcttctaccacaaccctgactacaactactgctggcactgtctcctccacaacagaggtcagggagagacgcagatcatacctcactcctgttagggatgaagagtctgaatcccaaagaaaagcaagatctagacaagcaagacaatctagaagatcaacacagggagtgacattaactgatcttcaagaagctgagaaaacaataggaagaagtcgttctacccgaaccagagaacaagaaaatgaagaaaaagaaaaagaggaaaaagagaaacaagataaagagaaacaagaagaaaagaaggagtcagaaacatctagagaagatgaatataaacaaaagtactccagaacgtatgatgagacttaccagcgttataggccagtatcaacttcaagttcaaccactccatcctcttcactttctactatgagcagttcactgtatgcttcaagtcaactaaacaggccaaatagtcttgtaggcataacttctgcttactccagaggaataacaaaagaaaatgaaagagagggagaaaaaagagaagaggagaaagaaggagaagataaatcacaacctaaatcaatcagagaacgacgacgaccaagagagaaaagaagatctacaggagtttcattttggacacaagatGAGCCACCTAGAACAGTTTCAGGCAGATATAAAAGCACAACCAGTGTCTCTGAAGAAGATGTCTCAAGTAGATATTCTCGAACAGATAGAAGTGGGTTCCCTAGATATAACAGGGATGCAAATGTTTCAGGTACTCTGGTTTCAAGTAGCACACTGGAAAAGAAAATTGAAGATCTTGAAAAGGAAGTAGTAAGAGAAAGACAAGAAAACCTAAGACTTGTGAGACTGATGCAAGATAAAGAGGAAATGATTGGAAAACTCAAAGAAGAAATTGATTTATTAAATAGAGACCTAGATGACATAGAAGATGAAAATGAACAGCTAAAGCAGGAAAATAAAACTCTTTTGAAAGTTGTGGGTCAGCTGACCAGGTAG MKMADAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAGYDVNIKDYDGWTPLHAAAHWGKEEACRILVDNLCDMEMVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRDKKSPLIESTANMDNNQSQKTFKNKETLIIEPEKNASRIESLEQEKVDEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPLASVTNANTSSTQAAPVAVTTPTVSSGQATPTSPIKKFPTTATKISPKEEERKDESPATWRLGLRKTGSYGALAEITASKEGQKEKDTAGVTRSASSPRLSSSLDNKEKEKDSKGTRLAYVAPTIPRRLASTSDIEEKENRDSSSLRTSSSYTRRKWEDDLKKNSSVNEGSTYHKSCSFGRRQDDLISSSVPSTTSTPTVTSAAGLQKSLLSSTSTTTKITTGSSSAGTQSSTSNRLWAEDSTEKEKDSVPTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSSSLSTMSSSLYASSQLNRPNSLVGITSAYSRGITKENEREGEKREEEKEGEDKSQPKSIRERRRPREKRRSTGVSFWTQDEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31652 FAM171A2::MYL4 ENSG00000161682.15::ENSG00000198336.9 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1609 TRUE 2902 TRUE 1108 FAM171A2 ENSG00000161682.15 protein_coding - - chr17:44353215-44363853:- chr17:44363597:- chr17:42430583-42441221:- chr17:42440965:- MYL4 ENSG00000198336.9 protein_coding + + chr17:47200446-47223679:+ chr17:47219904:+ chr17:45277812-45301045:+ chr17:45297270:+ chr17:44356356,chr17:44356368 chr17:47214339,chr17:47214327 NA NA chr17:42433724,chr17:42433736 chr17:45291705,chr17:45291693 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FAM171A1-2-B_N-PARTIAL|41-118~|1.9e-124 EF-hand_9-PARTIAL|~164-191|0.00011^EF-hand_7-PARTIAL|~164-193|2.4e-07^AIF-1-PARTIAL|~164-195|5.2e-05^EF-hand_8-PARTIAL|~164-187|0.0048^EF-hand_6|180-192|0.8^EF-hand_1|180-194|0.02 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.84Mb] 9 1 9 0.05 ONLY_REF_SPLICE YES_LDAS 0.1037 GT 1.3383 AG 1.9656 ENST00000293443.12 1-118 ENST00000393450.5 164-594 chr17|-|[0]44363597-44363714[0]<==>chr17|+|[1]47219904-47220053[0]|[1]47221682-47221855[0]|[1]47222380-47222457[0]|[1]47223014-47223042[2] atgccgccggcgagtggccccagcgtcctcgcgcggctgttgccgctgctggggctgctgctcggcagcgcctcccgggctcccggcaagtcgccgccggagccccccagcccgcaggAGTTCAAAGAGGCCTTTTCATTGTTTGACCGGACCCCGACTGGAGAGATGAAGATCACCTACGGCCAGTGCGGGGATGTACTGCGGGCCCTGGGCCAGAACCCTACCAATGCCGAGGTGCTGCGTGTGCTGGGCAAGCCCAAGCCTGAAGAGATGAATGTCAAGATGCTGGACTTTGAGACGTTCTTGCCCATCCTGCAGCACATTTCCCGCAACAAGGAGCAGGGCACCTATGAGGACTTCGTGGAGGGCCTGCGTGTCTTTGACAAGGAGAGCAATGGCACGGTCATGGGTGCTGAGCTTCGGCACGTCCTTGCCACCCTGGGAGAGAAGATGACTGAGGCTGAAGTGGAGCAGCTGTTAGCTGGGCAAGAGGATGCCAATGGCTGCATCAATTATGAAGCCTTTGTCAAGCACATCATGTCAGGGTGA MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEFKEAFSLFDRTPTGEMKITYGQCGDVLRALGQNPTNAEVLRVLGKPKPEEMNVKMLDFETFLPILQHISRNKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQEDANGCINYEAFVKHIMSG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31653 ARID2::KCTD16 ENSG00000189079.18::ENSG00000183775.11 NCIH1299 SRR8615898 SRR8652130 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ARID2 ENSG00000189079.18 protein_coding + + chr12:45729706-45908040:+ chr12:45731314:+ chr12:46123489-46301823:+ chr12:46125097:+ KCTD16 ENSG00000183775.11 protein_coding + + chr5:144170873-144485686:+ chr5:144206389:+ chr5:143550437-143865249:+ chr5:143585952:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ARID2:FoundationOne_panel","ARID2:Oncogene","ARID2:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr5] 9 2 9 2 ONLY_REF_SPLICE YES_LDAS 0.126 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 2 1 Yes hepatocellular carcinoma epithelial TSG nonsense, splice_site, frameshift FALSE NA NA NA NA NA NA NA NA NA 31657 ATP2C1::ALG1L2 ENSG00000017260.20::ENSG00000251287.9 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1616 FALSE NA FALSE NA ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130894775:+ chr3:130569439-130735556:+ chr3:130613619:+ ALG1L2 ENSG00000251287.9 protein_coding + + chr3:130081831-130113227:+ chr3:130091261:+ chr3:129800674-129832070:+ chr3:129810104:+ chr3:130918851,chr3:130918852 chr3:130082484,chr3:130082482 NA NA chr3:130637695,chr3:130637696 chr3:129801327,chr3:129801325 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Glycos_transf_1|72-237|1.6e-12^Glyco_trans_1_4|89-223|3.6e-10 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.74Mb] 96 35 96 35 ONLY_REF_SPLICE YES_LDAS 1.5911 GT 1.6895 AG 1.9329 ENST00000428331.6 1-6 ENST00000698236.2 21-735 chr3|+|[0]130894770-130894775[2]<==>chr3|+|[2]130091261-130091371[1]|[2]130092101-130092222[0]|[1]130092406-130092444[0]|[1]130093101-130093160[0]|[1]130094403-130094513[0]|[1]130096049-130096163[1]|[2]130097175-130097250[2]|[0]130098233-130098313[2] atgaagGGCTGTGACCGTCTACGACAAGCCGGCATCTTTCTTTAAAGAGGCACCTCTGGACCTGCAGCACCGGCTCTTCATGAAGCTGGGCAGCACGCACTCTCCGTTCAGGGCCCGCTCAGAACCTGAGGACCCAGACACAGAGCGGTCGGCCTTCACGGAGCGGGATTCTGGGAGCGGGCTGGTGACGCGTCTCCACGAGCGGCCAGCCCTGCTGGTCAGCAGCACAAGCTGGACAGAGGACGAAGACTTCTCTATCTTGCTGGCAGCTTTAGAAAAGTTTGAACAACTGACTCTTGACGGACAGAACCTTCCTTCTCTCGTCTGTGTGATAACAGGCAAAGGGCCTCTGAGGGAGTATTACAGCCGCCTCATCCACCAGAAGCATTTCCAGCACATCCAGGTCTGCATCCCCTGGCTGGAGGGCCGAGGACTACCCCCGCTTCTAGGGTCGGTGGACCTGGATGTCTGTCTGGACACGTCCTCCAGTGGCCTGGACCTGCCCATGAAGGTGGTGGACATGTTCAGGTGCTGTTTGCCTGCGTGTGCCGTGAACTTCAAGTGTTTACATGAGCTGGTGAAACATGAAGAAAACCGCCTGGTCTTTGAGGACTCAGAGGAACTGGCAGCTCAGCTGCAGATGCTTTTCTCAAACTTTCCTGATCCTGAAGGCAAGCTAAACCAGTTCCGGAAGAACCTGCGGGAGTCGCAGCAGCTCTGA MKGCDRLRQAGIFL*RGTSGPAAPALHEAGQHALSVQGPLRT*GPRHRAVGLHGAGFWERAGDASPRAASPAGQQHKLDRGRRLLYLAGSFRKV*TTDS*RTEPSFSRLCDNRQRASEGVLQPPHPPEAFPAHPGLHPLAGGPRTTPASRVGGPGCLSGHVLQWPGPAHEGGGHVQVLFACVCRELQVFT*AGET*RKPPGL*GLRGTGSSAADAFLKLS*S*RQAKPVPEEPAGVAAAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31658 PRRC2B::NUP214 ENSG00000288701.1::ENSG00000126883.19 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1619 FALSE NA FALSE NA PRRC2B ENSG00000288701.1 protein_coding + + chr9:131373636-131500197:+ chr9:131467753:+ chr9:134249023-134375584:+ chr9:134343140:+ NUP214 ENSG00000126883.19 protein_coding + + chr9:131125573-131234663:+ chr9:131215212:+ chr9:134000960-134110050:+ chr9:134090599:+ chr9:131469036,chr9:131469035 chr9:131212248,chr9:131212244 NA NA chr9:134344423,chr9:134344422 chr9:134087635,chr9:134087631 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame BAT2_N|1-188|3.2e-65^Pet100|475-516|0.00012^BAT2_N|564-617|2^BAT2_N|789-836|0.38^BAT2_N|883-990|0.035^BAT2_N|1447-1492|0.74 none ["NUP214:Oncogene"];["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.16Mb] 82 35 82 35 ONLY_REF_SPLICE YES_LDAS 1.4211 GT 1.5058 AG 1.5058 ENST00000682501.1 1-1911 ENST00000453861.6 2151-2903 chr9|+|[0]131430145-131430259[0]|[1]131432617-131432794[1]|[2]131436620-131436722[2]|[0]131438989-131439061[0]|[1]131444185-131444328[0]|[1]131446401-131446642[2]|[0]131447085-131447206[1]|[2]131447662-131447804[0]|[1]131455076-131455166[1]|[2]131459164-131459356[2]|[0]131464763-131465078[0]|[1]131467563-131467753[2]<==>chr9|+|[0]131215212-131215368[0]|[1]131222778-131222930[0]|[1]131228160-131228331[1]|[2]131229663-131229825[2]|[0]131230630-131230737[2] atgtccgatcgtttggggcaaattaccaagggcaaggatgggaaaagcaagtactcgactctcagcctgtttgataagtataaaggaaaatcagtagacgcgattagatcctcagttattcctagacatggcttacagagtcttgggaaagttgctgcagcccggcgcatgccaccgcctgcaaacctgccaagcttgaagtctgaaaacaaaggaaacgaccccaacatcgtgatagtacccaaggacgggacgggatgggcaaacaagcaggatcagcaagacccaaagagttccagtgcgacggcctctcagccgccggagtcgctgccgcagccgggtttgcagaaatctgtctccaatttgcagaaaccgacacagtcaatcagtcaggagaatacaaattcagtgccaggtggaccaaagtcatgggcacagctgaatggaaagccagtaggacacgaaggtggtttaaggggctcaagccgactgttatccttctctcccgaggaatttccgacgctgaaagcagctggagggcaggacaaggctggcaaagaaaagggcgtcttagatctgtcgtatgggccaggaccaagcctccgccctcagaatgtgacaagctggagggagggcggtgggcgacacataatttctgccacgtctctgagcacctccccaactgagctgggcagcaggaactcgagtacgggagatggagccccctcctcggcatgtaccagcgattctaaggacccctctctccgcccggctcagcctgtccgaaaaggggcttcacagttcatgggaaatgtataccacccacctacataccatgacatgcttcctgcttttatgtgttcgccgaagtcatcagaaaaccagggtacagtggaacgaggctcttttccccttcctcagctccgccttgaacctcgagttccttttagacagttccagatgaatgaccaagacggaaaagaaaacaggctgggattgtctcgcccactccgcccactaaggcagctggtggagcgggcaccacggcccaccattatcaatgcggaaaacctgaagggccttgacgatctggacgccgatgccgatgatggctgggcaggcctccatgaagaagtggactattctgagaaactgaagttcagtgatgatgaagaggaggaagaagttgtgaaggacggcaggccaaagtggaacagttgggaccctaggaggcagcggcagttgtcaatgagctctgcagacagtgcggacgctaagcggactcgagaggaagggaaggactgggctgaagcagtgggtgcgtcccgtgtggtccgaaaggcgccagaccctcagccaccgcccaggaagcttcatggctgggcaccaggccctgactaccagaagtcatcaatgggcagcatgttccggcaacagtccatcgaggacaaggaggacaagcccccaccaaggcagaagttcattcagtcagagatgtccgaggcggtggagcgagcccgaaagcgccgggaagaagaggagcgccgagcccgggaggagaggctggccgcctgtgctgccaaactcaagcagctggaccagaagtgtaagcaggcacgaaaggcaggtgaggcccggaagcaggcagagaaggaagtgccctggtctccaagtgctgagaaggcatctccccaggaaaacggccctgctgtccacaaaggctccccagaattccctgcccaagagacccccaccacattcccagaagaggcacccacagtgtccccagcagtggcacagagcaacagcagtgaggaagaggccagagaggctgggtcccctgcacaggagttcaagtatcagaagtcccttcctccccgattccagcgccagcagcagcaacaacagcagCAATCATCCTCTTCCAGTGGTAGCGTGTTTGGGTCTGGAAACACTGGAAGAGGGGGAGGTTTCTTCAGTGGCCTTGGAGGAAAACCCAGTCAGGATGCAGCCAACAAAAACCCATTCAGCTCGGCCAGTGGGGGCTTTGGATCCACAGCTACCTCAAATACCTCTAACCTATTTGGAAACAGTGGGGCCAAGACATTTGGTGGATTTGCCAGCTCGTCGTTTGGAGAGCAGAAACCCACTGGCACTTTCAGCTCTGGAGGAGGAAGTGTGGCATCCCAAGGCTTTGGGTTTTCCTCTCCAAACAAAACAGGTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGCACTGCAGCTGCCAGCGCAGGAGGATTCGGGTCCCTGGCCATGAGCCTGTCTCCGACCCTGAAGGGCAGGCTGTTGCTGATGAGGCCCAAGGCAGGAGGAGGAAGGGAGCAGGCCGCTCCTGGGAGAAAGTCCAATGAGAGCAGATCCCTTGGCCACCTTTGTATGGAAAGAGCCTTGACCTCACCATTAAAAGTTTGGGAGCAGCAGCAACACCACATCCTTCGGCACGCTCGCGAGTCAGAATGCCCCCACTTTCGGATCACTGTCCCAACAGACTTCTGGTTTTGGGACCCAGAGTAG MSDRLGQITKGKDGKSKYSTLSLFDKYKGKSVDAIRSSVIPRHGLQSLGKVAAARRMPPPANLPSLKSENKGNDPNIVIVPKDGTGWANKQDQQDPKSSSATASQPPESLPQPGLQKSVSNLQKPTQSISQENTNSVPGGPKSWAQLNGKPVGHEGGLRGSSRLLSFSPEEFPTLKAAGGQDKAGKEKGVLDLSYGPGPSLRPQNVTSWREGGGRHIISATSLSTSPTELGSRNSSTGDGAPSSACTSDSKDPSLRPAQPVRKGASQFMGNVYHPPTYHDMLPAFMCSPKSSENQGTVERGSFPLPQLRLEPRVPFRQFQMNDQDGKENRLGLSRPLRPLRQLVERAPRPTIINAENLKGLDDLDADADDGWAGLHEEVDYSEKLKFSDDEEEEEVVKDGRPKWNSWDPRRQRQLSMSSADSADAKRTREEGKDWAEAVGASRVVRKAPDPQPPPRKLHGWAPGPDYQKSSMGSMFRQQSIEDKEDKPPPRQKFIQSEMSEAVERARKRREEEERRAREERLAACAAKLKQLDQKCKQARKAGEARKQAEKEVPWSPSAEKASPQENGPAVHKGSPEFPAQETPTTFPEEAPTVSPAVAQSNSSEEEAREAGSPAQEFKYQKSLPPRFQRQQQQQQQQSSSSSGSVFGSGNTGRGGGFFSGLGGKPSQDAANKNPFSSASGGFGSTATSNTSNLFGNSGAKTFGGFASSSFGEQKPTGTFSSGGGSVASQGFGFSSPNKTGGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGSLAMSLSPTLKGRLLLMRPKAGGGREQAAPGRKSNESRSLGHLCMERALTSPLKVWEQQQHHILRHARESECPHFRITVPTDFWFWDPE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma,Uterine Carcinosarcoma LUNG,BREAST,UTERUS,LIVER,UTERUS exact 134269650|134269650|134375584,134340465,134358832|134375584,134354780|134354006,134334743 FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,FALSE 134090599|134098165|134010285,134050847,134103547|134010285,134103547|134103547,134090599 TRUE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE,TRUE PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,In-frame,Out-of-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE nucleoporin 214kDa (CAN) 1 AML, T-ALL leukaemia_lymphoma fusion translocation 31659 CDC73::ENSG00000288950 ENSG00000134371.14::ENSG00000288950.1 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000288950 ENSG00000288950.1 lncRNA + + chr1:193482540-193546198:+ chr1:193546048:+ chr1:193451670-193515328:+ chr1:193515178:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC73:Oncogene","CDC73:FoundationOne_panel","CDC73:ArcherDX_panel"] 63 17 63 17 ONLY_REF_SPLICE YES_LDAS 0.9717 GT 1.9086 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 31660 SMARCC1::MAP4 ENSG00000173473.11::ENSG00000047849.22 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1617 TRUE 2926 TRUE 1114 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47772817:- chr3:47626759-47823596:- chr3:47814307:- MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47857512:- chr3:47892180-48130762:- chr3:47899002:- chr3:47746138,chr3:47746144 chr3:47867593,chr3:47867596 NA NA chr3:47787628,chr3:47787634 chr3:47909083,chr3:47909086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SWIRM-assoc_2|32-133|1.1e-57 none ["MAP4:Oncogene"];["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[68584] 61 59 61 28.12 ONLY_REF_SPLICE YES_LDAS 1.0824 GT 1.5301 AG 1.9656 ENST00000454240.1 1-315 ENST00000360240.10 3067-3459 chr3|-|[2]47772817-47772936[0]|[2]47781603-47781797[0]<==>chr3|-|[2]47853032-47853039[1]|[0]47853163-47853352[0]|[2]47855248-47855360[1]|[0]47857431-47857512[0] atggccgcagcggcgggcggcggcgggccggggacagcggtaggcgccacgggctcggggattgcggcggcagccgcaggcctagctgtttatcgacggaaggatgggggcccggccaccaagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggcaagcactacaagaagtatgttcatgcggatgctcctaccaataaaacactggctgggctggtggtgcagcttcttcagttccaggaagatgcctttgggaagcatgtcaccaacccggccttcaccaaactccctGTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGGTCTCCTCCAAGTGTGGGTCTAAGGCTAACATCAAGCACAAGCCTGGTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAAGGCCCAGGCCAAGGTGGGATCCCTCGATAATGTGGGCCACCTACCTGCAGGAGGTGCTGTGAAGACTGAGGGCGGTGGCAGCGAGGCTCCTCTGTGTCCGGGTCCCCCTGCTGGGGAGGAGCCGGCCATCTCTGAGGCAGCGCCTGAAGCTGGCGCCCCCACTTCAGCCAGTGGCCTCAATGGCCACCCCACCCTGTCAGGGGGTGGTGACCAAAGGGAGGCCCAGACCTTGGACAGCCAGATCCAGGAGACAAGCATCTAA MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPVQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGAVKTEGGGSEAPLCPGPPAGEEPAISEAAPEAGAPTSASGLNGHPTLSGGGDQREAQTLDSQIQETSI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31662 SMARCC1::MAP4 ENSG00000173473.11::ENSG00000047849.22 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1618 TRUE 2926 TRUE 1114 SMARCC1 ENSG00000173473.11 protein_coding - - chr3:47585269-47782106:- chr3:47772817:- chr3:47626759-47823596:- chr3:47814307:- MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:47867338:- chr3:47892180-48130762:- chr3:47908828:- chr3:47746138,chr3:47746144 chr3:47867593,chr3:47867596 NA NA chr3:47787628,chr3:47787634 chr3:47909083,chr3:47909086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SWIRM-assoc_2|32-133|1.1e-57 none ["MAP4:Oncogene"];["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[68584] 47 79 47 50.88 ONLY_REF_SPLICE YES_LDAS 1.1889 GT 1.5301 AG 1.9656 ENST00000454240.1 1-315 ENST00000360240.10 2974-3459 chr3|-|[2]47772817-47772936[0]|[2]47781603-47781797[0]<==>chr3|-|[2]47853032-47853039[1]|[0]47853163-47853352[0]|[2]47855248-47855360[1]|[0]47857431-47857512[0]|[2]47867246-47867338[0] atggccgcagcggcgggcggcggcgggccggggacagcggtaggcgccacgggctcggggattgcggcggcagccgcaggcctagctgtttatcgacggaaggatgggggcccggccaccaagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggcaagcactacaagaagtatgttcatgcggatgctcctaccaataaaacactggctgggctggtggtgcagcttcttcagttccaggaagatgcctttgggaagcatgtcaccaacccggccttcaccaaactccctGTCCAGATAGTCTCCAAAAAAGTGAGCTACAGCCATATTCAGTCCAAGTGTGGTTCCAAGGACAATATTAAGCATGTCCCTGGAGGTGGTAATGTTCAGATTCAGAACAAGAAAGTGGACATCTCTAAGGTCTCCTCCAAGTGTGGGTCTAAGGCTAACATCAAGCACAAGCCTGGTGGAGGAGATGTCAAGATTGAAAGTCAGAAGTTGAACTTCAAGGAGAAGGCCCAGGCCAAGGTGGGATCCCTCGATAATGTGGGCCACCTACCTGCAGGAGGTGCTGTGAAGACTGAGGGCGGTGGCAGCGAGGCTCCTCTGTGTCCGGGTCCCCCTGCTGGGGAGGAGCCGGCCATCTCTGAGGCAGCGCCTGAAGCTGGCGCCCCCACTTCAGCCAGTGGCCTCAATGGCCACCCCACCCTGTCAGGGGGTGGTGACCAAAGGGAGGCCCAGACCTTGGACAGCCAGATCCAGGAGACAAGCATCTAA MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWESPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPVQIVSKKVSYSHIQSKCGSKDNIKHVPGGGNVQIQNKKVDISKVSSKCGSKANIKHKPGGGDVKIESQKLNFKEKAQAKVGSLDNVGHLPAGGAVKTEGGGSEAPLCPGPPAGEEPAISEAAPEAGAPTSASGLNGHPTLSGGGDQREAQTLDSQIQETSI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Testis no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31666 CTCF::SLC9A5 ENSG00000102974.16::ENSG00000135740.17 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1624 FALSE NA FALSE NA CTCF ENSG00000102974.16 protein_coding + + chr16:67562467-67639177:+ chr16:67571264:+ chr16:67596370-67673080:+ chr16:67605167:+ SLC9A5 ENSG00000135740.17 protein_coding + + chr16:67237683-67272191:+ chr16:67270738:+ chr16:67271586-67306094:+ chr16:67304641:+ chr16:67600556 chr16:67270696 NA NA chr16:67634459 chr16:67304599 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CTCF:ArcherDX_panel","CTCF:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.29Mb] 24 11 24 11 ONLY_REF_SPLICE YES_LDAS 0.4251 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CCCTC-binding factor 1 Yes endometrial, breast, head and neck cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 31671 PHRF1::RASSF7 ENSG00000070047.13::ENSG00000099849.15 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PHRF1 ENSG00000070047.13 protein_coding + + chr11:576470-612222:+ chr11:601701:+ chr11:576470-612222:+ chr11:601701:+ RASSF7 ENSG00000099849.15 protein_coding + + chr11:560404-564025:+ chr11:561762:+ chr11:560404-564025:+ chr11:561762:+ chr11:602613,chr11:602611 chr11:561192,chr11:561187 NA NA chr11:602613,chr11:602611 chr11:561192,chr11:561187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];LOCAL_REARRANGEMENT:+:[12465] 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.1944 GT 1.2867 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31673 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1632 TRUE 2938 TRUE 1120 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 5 11 4.17 ONLY_REF_SPLICE YES_LDAS 0.1842 GT 1.6402 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31674 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1633 TRUE 2938 TRUE 1120 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858,chr17:30771149 chr17:30775693,chr17:30775750,chr17:30779030 NA NA chr17:29097933,chr17:29097876,chr17:29098167 chr17:29102711,chr17:29102768,chr17:29106048 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 2 10 0.83 ONLY_REF_SPLICE YES_LDAS 0.1316 GT 1.6402 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31676 CDC73::ENSG00000227240 ENSG00000134371.14::ENSG00000227240.2 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDC73 ENSG00000134371.14 protein_coding + + chr1:193121983-193254815:+ chr1:193125217:+ chr1:193091113-193223945:+ chr1:193094347:+ ENSG00000227240 ENSG00000227240.2 lncRNA + + chr1:193473224-194198708:+ chr1:193673210:+ chr1:193442354-194167838:+ chr1:193642340:+ chr1:193125922,chr1:193125923 chr1:193493162,chr1:193493160 NA NA chr1:193095052,chr1:193095053 chr1:193462292,chr1:193462290 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDC73:Oncogene","CDC73:FoundationOne_panel","CDC73:ArcherDX_panel"] 10 20 10 16.74 ONLY_REF_SPLICE YES_LDAS 0.3248 GT 1.9086 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cell division cycle 73 1 Yes parathyroid adenoma parathyroid adenoma, multiple ossifying jaw fibroma hyperparathyroidism-jaw tumour syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift FALSE NA NA NA NA NA NA NA NA NA 31683 NCOA7::TPD52L1 ENSG00000111912.20::ENSG00000111907.21 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1628 FALSE NA FALSE NA NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125815404:+ chr6:126102307-126253180:+ chr6:126136550:+ TPD52L1 ENSG00000111907.21 protein_coding + + chr6:125119049-125264407:+ chr6:125262834:+ chr6:125440195-125585553:+ chr6:125583980:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SUIM_assoc|3-35|0.00065 none ["DEEPEST2019","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.52Mb] 8 5 8 4.44 ONLY_REF_SPLICE YES_LDAS 0.1511 GT 1.8295 AG 1.8323 ENST00000368357.7 1-50 ENST00000368388.6 387-396 chr6|+|[0]125815355-125815404[1]<==>chr6|+|[2]125262834-125262843[2] atggataccaaggaagagaagaaggaacggaaacaaagttattttgctcgACGAAAGTAG MDTKEEKKERKQSYFARRK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31685 PIGG::ZNF595 ENSG00000174227.16::ENSG00000272602.6 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1625 TRUE 2932 TRUE 1117 PIGG ENSG00000174227.16 protein_coding + + chr4:499210-540200:+ chr4:500601:+ chr4:492999-533989:+ chr4:494390:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:85731:+ chr4:53180-88096:+ chr4:85622:+ chr4:504905,chr4:504903 chr4:77017,chr4:77012 NA NA chr4:498694,chr4:498692 chr4:76909,chr4:76904 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Phosphodiest|68-275|5.2e-15^Metalloenzyme|189-323|1e-07 zf-H2C2_2-PARTIAL|~131-150|9.1e-10^zf-C2H2-PARTIAL|~131-135|0.0016^zf-C2H2_4-PARTIAL|~131-135|0.099^zf-C2H2_6-PARTIAL|~131-135|0.00061^C1_4-PARTIAL|~131-150|0.03^GAGA-PARTIAL|~131-143|7.8^YEATS-PARTIAL|~131-148|0.025^zf-RING_7|133-148|0.027^DUF6076|135-153|0.042^DNA_RNApol_7kD|138-147|0.066^zf-trcl|139-176|0.045^zf-AN1|139-155|0.0078^zf-C2H2|141-162|1.1e-05^zf-C2H2_4|141-162|0.001^zf-C2H2_6|141-150|0.0027^zf_UBZ|141-158|0.0034^zf-C2H2_11|141-150|0.057^zf-C2H2_jaz|141-150|0.17^Zn-ribbon_8|141-150|0.039^TBPIP_C|141-162|0.44^XPA_N|142-157|0.022^C1_4|142-177|0.08^YhfH|142-149|0.058^zf-C2HC_2|142-150|0.34^Zn_ribbon_recom|142-154|0.071^PknG_rubred|143-185|0.062^FYDLN_acid|143-183|0.14^Zn_ribbon_SprT|143-175|0.71^zf-H2C2_2|154-179|3e-10^DUF6076|159-204|0.0089^zf-RING_7|161-174|0.23^zf-AN1|166-177|0.049^zf-C2H2|168-190|1.6e-08^zf-C2H2_4|168-190|4.6e-06^zf-C2H2_6|168-190|0.00014^zf_UBZ|168-180|0.013^zf-C2H2_11|168-189|0.00019^zf-C2H2_jaz|168-188|0.092^Zn-ribbon_8|168-207|2.7e-05^TBPIP_C|168-191|0.0076^DNA_RNApol_7kD|168-176|0.34^Zn_ribbon_SprT|168-205|0.66^XPA_N|169-180|0.0082^C1_4|169-205|0.022^YhfH|169-178|0.082^PknG_rubred|169-206|0.0073^zf-C2HC_2|169-189|0.00038^Zn_ribbon_recom|169-187|0.038^MRP-S23|170-195|0.16^zf-H2C2_2|182-206|7e-12^YEATS|184-202|2.9^zf-RING_7|187-202|0.0047^GAGA|191-219|0.069^FYDLN_acid|193-223|0.067^zf-trcl|194-205|0.055^zf-AN1|194-205|0.072^zf-C2H2|196-218|1.5e-07^zf-C2H2_4|196-218|0.00012^zf-C2H2_6|196-218|1.8e-06^zf_UBZ|196-214|0.0016^zf-C2H2_jaz|196-216|0.0016^Zn-ribbon_8|196-206|0.016^TBPIP_C|196-218|0.18^DNA_RNApol_7kD|196-205|0.15^Zn_ribbon_SprT|196-233|0.0099^XPA_N|197-208|0.0024^zf-C2H2_11|197-217|0.3^YhfH|197-205|0.099^zf-C2HC_2|197-217|0.17^Zn_ribbon_recom|197-209|0.046^C1_4|198-234|0.012^Gag_p30|200-225|1.6^zf-H2C2_2|211-235|1.2e-12^zf-RING_7|215-230|0.011^YEATS|217-230|2.7^DUF6076|217-233|0.028^FYDLN_acid|221-250|0.33^zf-trcl|222-234|0.041^zf-AN1|222-233|0.046^zf-C2H2|224-246|1.3e-08^zf-C2H2_4|224-246|8.5e-06^zf-C2H2_6|224-246|6.8e-06^zf_UBZ|224-243|0.00098^zf-C2H2_11|224-245|0.0012^zf-C2H2_jaz|224-244|0.0016^Zn-ribbon_8|224-259|0.00018^TBPIP_C|224-247|0.016^DNA_RNApol_7kD|224-233|0.13^Zn_ribbon_SprT|224-261|0.0011^XPA_N|225-236|0.0012^YhfH|225-233|0.079^PknG_rubred|225-269|0.0048^zf-C2HC_2|225-245|0.47^Zn_ribbon_recom|225-238|0.0098^C1_4|226-263|0.019^MRP-S23|226-251|0.5^zf-H2C2_2|239-261|6.1e-12^zf-RING_7|243-258|0.083^YEATS|244-258|2.5^DUF6076|245-261|0.042^GAGA|248-274|1.5^zf-trcl|250-293|0.00022^zf-AN1|250-261|0.031^FYDLN_acid|251-281|0.28^zf-C2H2|252-274|1.7e-06^zf-C2H2_4|252-274|0.0016^zf-C2H2_6|252-271|5.9e-06^zf_UBZ|252-270|0.0042^zf-C2H2_11|252-273|0.0054^zf-C2H2_jaz|252-272|0.028^Zn-ribbon_8|252-262|0.0066^TBPIP_C|252-274|0.16^DNA_RNApol_7kD|252-258|0.035^Zn_ribbon_SprT|252-292|0.06^XPA_N|253-262|0.01^YhfH|253-261|0.093^zf-C2HC_2|253-261|4.8^Zn_ribbon_recom|253-266|0.052^C1_4|254-289|0.067^zf-H2C2_2|266-291|7.5e-12^YEATS|271-286|2.5^zf-RING_7|272-286|0.17^DUF6076|272-319|0.017^GAGA|276-304|0.0036^zf-AN1|278-289|0.04^zf-C2H2|280-302|2.2e-08^zf-C2H2_4|280-302|3.4e-05^zf-C2H2_6|280-299|1.1e-05^zf_UBZ|280-299|0.00069^zf-C2H2_11|280-301|0.0088^zf-C2H2_jaz|280-300|0.0027^Zn-ribbon_8|280-297|0.00096^TBPIP_C|280-302|0.12^DNA_RNApol_7kD|280-286|0.036^Zn_ribbon_SprT|280-319|0.0095^XPA_N|281-292|0.0019^C1_4|281-331|0.00016^YhfH|281-291|0.032^PknG_rubred|281-320|0.015^zf-C2HC_2|281-293|0.38^Zn_ribbon_recom|281-312|0.2^Gag_p30|292-357|0.018^zf-H2C2_2|294-319|1.5e-11^zf-RING_7|300-314|0.13^GAGA|304-326|0.49^FYDLN_acid|305-332|0.098^zf-trcl|306-317|0.055^zf-AN1|306-317|0.077^zf-C2H2|308-330|1.7e-08^zf-C2H2_4|308-330|0.00025^zf-C2H2_6|308-331|0.046^zf_UBZ|308-320|0.0032^zf-C2H2_jaz|308-327|0.41^Zn-ribbon_8|308-343|0.00034^TBPIP_C|308-327|0.18^DNA_RNApol_7kD|308-317|0.25^Zn_ribbon_SprT|308-345|0.013^XPA_N|309-320|0.0053^zf-C2H2_11|309-329|0.14^YhfH|309-319|0.036^zf-C2HC_2|309-326|0.0008^C1_4|310-358|0.01^PknG_rubred|310-353|0.21^zf-H2C2_2|326-346|9.2e-06^zf-RING_7|329-342|0.025^zf-AN1|333-345|0.097^zf-trcl|334-349|0.0026^TBPIP_C|334-359|0.0043^DUF6076|334-378|0.26^zf-C2HC_2|335-357|0.033^zf-C2H2|336-358|6.7e-08^zf-C2H2_4|336-358|8e-05^zf-C2H2_6|336-358|4.2e-05^zf_UBZ|336-346|0.013^zf-C2H2_11|336-357|4.5e-05^zf-C2H2_jaz|336-355|0.042^Zn-ribbon_8|336-372|0.00013^DNA_RNApol_7kD|336-346|0.13^Zn_ribbon_SprT|336-372|0.032^XPA_N|337-348|0.004^YhfH|337-345|0.12^Zn_ribbon_recom|337-366|0.3^C1_4|338-373|0.065^MRP-S23|339-363|7.9^YEATS|349-370|1.4^zf-H2C2_2|350-374|3.7e-12^zf-RING_7|355-370|0.0052^GAGA|360-385|0.54^zf-trcl|362-373|0.04^zf-AN1|362-373|0.071^PknG_rubred|362-403|0.0098^FYDLN_acid|362-376|0.38^zf-C2H2|364-386|2.9e-09^zf-C2H2_4|364-386|0.00033^zf-C2H2_6|364-386|0.023^zf_UBZ|364-375|0.0036^zf-C2H2_jaz|364-384|0.019^Zn-ribbon_8|364-399|0.0072^TBPIP_C|364-385|0.21^DNA_RNApol_7kD|364-372|0.3^Zn_ribbon_SprT|364-403|0.19^XPA_N|365-376|0.0027^zf-C2H2_11|365-385|0.43^YhfH|365-372|0.13^zf-C2HC_2|365-385|0.051^FYDLN_acid|365-406|0.074^C1_4|366-415|0.0092^MRP-S23|367-391|0.82^Gag_p30|376-442|0.12^zf-H2C2_2|378-403|2e-12^zf-RING_7|383-398|0.0049^DUF6076|385-401|0.2^YEATS|386-398|2.4^GAGA|388-413|0.27^zf-trcl|390-401|0.043^zf-AN1|390-401|0.072^zf-C2H2|392-414|9.1e-09^zf-C2H2_4|392-414|0.00013^zf-C2H2_6|392-414|0.0043^zf_UBZ|392-404|0.0025^zf-C2H2_jaz|392-412|0.0031^Zn-ribbon_8|392-403|0.0097^TBPIP_C|392-405|0.31^DNA_RNApol_7kD|392-401|0.16^XPA_N|393-404|0.002^zf-C2H2_11|393-404|0.72^YhfH|393-403|0.018^zf-C2HC_2|393-405|0.11^Zn_ribbon_recom|393-402|1.3^C1_4|394-430|0.038^zf-H2C2_2|410-431|4.2e-11^zf-RING_7|411-426|0.01^DUF6076|412-429|0.016^FYDLN_acid|417-445|0.57^YEATS|417-426|4.5^zf-trcl|418-430|0.05^zf-AN1|418-429|0.042^zf-C2H2|420-442|1.3e-08^zf-C2H2_4|420-442|8.5e-06^zf-C2H2_6|420-442|6.8e-06^zf_UBZ|420-439|0.00098^zf-C2H2_11|420-441|0.0013^zf-C2H2_jaz|420-440|0.0016^Zn-ribbon_8|420-455|0.00053^TBPIP_C|420-443|0.015^DNA_RNApol_7kD|420-429|0.15^Zn_ribbon_SprT|420-455|1.1^XPA_N|421-432|0.0012^YhfH|421-429|0.082^zf-C2HC_2|421-441|0.47^Zn_ribbon_recom|421-435|0.0074^C1_4|422-470|0.0067^MRP-S23|422-447|0.48^PknG_rubred|422-465|0.0054^zf-H2C2_2|435-457|3.4e-12^zf-RING_7|439-454|0.011^YEATS|440-454|2^DUF6076|441-461|0.0071^zf-trcl|446-487|5.6e-06^zf-AN1|446-457|0.048^zf-C2H2|448-470|5.3e-06^zf-C2H2_4|448-470|0.0052^zf-C2H2_6|448-467|0.0028^zf_UBZ|448-467|0.0012^zf-C2H2_11|448-469|0.013^zf-C2H2_jaz|448-468|0.0081^Zn-ribbon_8|448-457|0.012^TBPIP_C|448-470|0.012^DNA_RNApol_7kD|448-455|0.19^XPA_N|449-460|0.0038^YhfH|449-456|0.11^zf-C2HC_2|449-457|5.3^Zn_ribbon_recom|449-465|1^C1_4|450-499|0.00098^Gag_p30|460-526|0.023^zf-H2C2_2|462-487|2.3e-12^zf-RING_7|468-482|0.17^YEATS|468-482|2.8^DUF6076|468-489|0.016^GAGA|472-494|7.9^FYDLN_acid|473-501|0.46^zf-AN1|474-485|0.034^zf-C2H2|476-498|1.4e-08^zf-C2H2_4|476-498|0.00011^zf-C2H2_6|476-498|0.00013^zf_UBZ|476-487|0.025^zf-C2H2_11|476-485|0.11^zf-C2H2_jaz|476-492|0.03^Zn-ribbon_8|476-515|2.6e-05^TBPIP_C|476-486|0.39^DNA_RNApol_7kD|476-482|0.033^XPA_N|477-488|0.0029^YhfH|477-487|0.014^PknG_rubred|477-486|4.4^zf-C2HC_2|477-489|0.093^Zn_ribbon_recom|477-486|0.63^C1_4|478-514|0.015^zf-H2C2_2|494-515|4.6e-06^zf-RING_7|497-510|0.027^PknG_rubred|499-549|0.0003^DUF6076|499-517|0.6^zf-AN1|501-513|0.093^TBPIP_C|502-527|0.0061^zf-trcl|503-539|0.3^zf-C2HC_2|503-525|0.033^Zn_ribbon_recom|503-540|0.0066^zf-C2H2|504-526|1.4e-08^zf-C2H2_4|504-526|4.4e-06^zf-C2H2_6|504-527|6.1e-08^zf_UBZ|504-523|0.00056^zf-C2H2_11|504-525|0.00073^zf-C2H2_jaz|504-524|0.0023^Zn-ribbon_8|504-539|0.00011^DNA_RNApol_7kD|504-513|0.18^Zn_ribbon_SprT|504-539|0.002^XPA_N|505-516|0.0015^YhfH|505-513|0.095^C1_4|506-554|0.006^MRP-S23|506-531|0.43^zf-H2C2_2|518-542|2.3e-11^zf-RING_7|523-538|0.059^DUF6076|525-585|0.075^YEATS|528-538|5.5^FYDLN_acid|529-551|0.26^zf-AN1|530-541|0.044^zf-C2H2|532-554|6.1e-08^zf-C2H2_4|532-554|0.00013^zf-C2H2_6|532-554|0.00066^zf_UBZ|532-544|0.036^zf-C2H2_11|532-553|0.016^zf-C2H2_jaz|532-552|0.02^Zn-ribbon_8|532-567|0.0043^TBPIP_C|532-554|0.034^DNA_RNApol_7kD|532-538|0.024^XPA_N|533-540|0.088^YhfH|533-540|0.16^zf-C2HC_2|533-553|0.35^C1_4|534-582|0.055^YEATS|541-566|0.079^zf-H2C2_2|547-570|1.7e-11^zf-RING_7|552-566|0.0058^GAGA|555-578|1.5^PknG_rubred|556-582|0.042^FYDLN_acid|557-585|0.13^zf-trcl|558-573|0.0019^zf-AN1|558-569|0.032^zf-C2H2|560-582|1.2e-06^zf-C2H2_4|560-582|0.0014^zf-C2H2_6|560-582|0.00029^zf_UBZ|560-570|0.0079^zf-C2H2_jaz|560-579|0.0052^Zn-ribbon_8|560-570|0.04^TBPIP_C|560-579|0.55^XPA_N|561-570|0.0078^zf-C2H2_11|561-581|0.038^YhfH|561-570|0.077^zf-C2HC_2|561-579|0.16^Zn_ribbon_recom|561-591|0.086^DNA_RNApol_7kD|561-566|0.79^C1_4|562-610|0.0043^zf-H2C2_2|575-599|4.9e-11^zf-RING_7|581-594|0.14^DUF6076|581-597|0.78^zf-C2H2_11|586-606|0.025^zf-trcl|586-597|0.17^zf_UBZ|587-598|0.0072^zf-AN1|587-597|0.16^TBPIP_C|587-610|0.03^zf-C2H2|588-610|1.3e-09^zf-C2H2_4|588-610|1.1e-05^zf-C2H2_6|588-610|0.00032^zf-C2H2_jaz|588-608|0.00053^Zn-ribbon_8|588-598|0.0017^DNA_RNApol_7kD|588-596|0.27^Zn_ribbon_SprT|588-607|0.069^XPA_N|589-597|0.014^YhfH|589-598|0.047^zf-C2HC_2|589-609|0.03^Zn_ribbon_recom|589-601|0.22^zf-H2C2_2|603-613|0.19 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.41Mb] 7 15 7 8.08 ONLY_REF_SPLICE YES_LDAS 0.1831 GT 1.9656 AG 1.6402 ENST00000506402.5 1-360 ENST00000609518.5 131-1851 chr4|+|[0]499336-499489[0]|[1]500396-500601[2]<==>chr4|+|[1]85731-87451[2] atgcggctgggctccgggactttcgctacctgttgcgtagcgatcgaggtgctagggatcgcggtcttccttcggggattcttcccggctcccgttcgttcctctgccagagcggaacacggagcggagcccccagcgcccgaaccctcggctggagccagttctaactggaccacgctgccaccacctctcttcagtaaagttgttattgttctgatagatgccttgagagatgattttgtgtttgggtcaaagggtgtgaaatttatgccctacacaacttaccttgtggaaaaaggagcatctcacagttttgtggctgaagcaaagccacctacagttactatgcctcgaatcaagCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAATACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTTTAAATGTACAGAATGTGGCAGATCGTTTTACATGTCACACCTAACTCAACATACAGGAATTCATGCTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGTTCTGAACGAACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAACACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGATGGTCCACAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAAAAATGTGGCAAAGCTTTTAACCAATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTACACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAACACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATATGGTCCGCAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCTACAAATGCAAAGAATGTGGCAAAGCCTATAACTTATCCTCAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGATAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACTGTACACAAGCGAATTCATACTGGCAAGGAACATAGTTGA MRLGSGTFATCCVAIEVLGIAVFLRGFFPAPVRSSARAEHGAEPPAPEPSAGASSNWTTLPPPLFSKVVIVLIDALRDDFVFGSKGVKFMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKLYVLLSAKTFHQCRG*KIHSTNLY*KDTRNVDMRIYN*EKAVNV*MSVRCRKELIMEFTSACQLPRAKYFNVIHVLKFLVNFQIQTNIR*DILERNPLNVQNVADRFTCHT*LNIQEFMLERNPTNVKNVAKPLIGPHHLVNIREFILERNPTHVKNVAKPLDGPQF*TNIRKFILERNPTNVKNVAKPLQGPQH*MNTRKFILERNPTNVKNVAKPLDGPQA*MNIRIFILERNPTNVKNVAKPLDSPGA*MNIKIFILAKNPTHVKNVAKLLTNPQVLLYTGAFILNKNFTNVKNVAKPLLGPHPLINIREFILERNPTHVKNVAKLFIGPHTLLNIREFILERNPTRAKNVAKLLTNPQLLYYTRESILGKNLTNVKNVAKPLHGPQH*TNIRKFILARNPTNVKNVAKLSYGPQA*MNIRIFILERNPTNVKNVAKLLTNPQALLYTGAFILNKNFTNVKNVAKPLLGPQP*MNIRKFILERNPTNAKNVAKPITYPQPLLNIREFILERNPSHVKNVAKPSIGPHPLLNIR*FILERNPTNVKNVAKLLIGPQPLLYTSEFILARNIV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31686 PIGG::ZNF595 ENSG00000174227.16::ENSG00000272602.6 NCIH1339 SRR8615899 SRR8652129 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1626 TRUE 2932 TRUE 1117 PIGG ENSG00000174227.16 protein_coding + + chr4:499210-540200:+ chr4:501170:+ chr4:492999-533989:+ chr4:494959:+ ZNF595 ENSG00000272602.6 protein_coding + + chr4:53286-88208:+ chr4:85731:+ chr4:53180-88096:+ chr4:85622:+ chr4:504905,chr4:504903 chr4:77017,chr4:77012 NA NA chr4:498694,chr4:498692 chr4:76909,chr4:76904 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RVP_2|80-125|1.5e-05 zf-H2C2_2-PARTIAL|~131-150|9.1e-10^zf-C2H2-PARTIAL|~131-135|0.0016^zf-C2H2_4-PARTIAL|~131-135|0.099^zf-C2H2_6-PARTIAL|~131-135|0.00061^C1_4-PARTIAL|~131-150|0.03^GAGA-PARTIAL|~131-143|7.8^YEATS-PARTIAL|~131-148|0.025^zf-RING_7|133-148|0.027^DUF6076|135-153|0.042^DNA_RNApol_7kD|138-147|0.066^zf-trcl|139-176|0.045^zf-AN1|139-155|0.0078^zf-C2H2|141-162|1.1e-05^zf-C2H2_4|141-162|0.001^zf-C2H2_6|141-150|0.0027^zf_UBZ|141-158|0.0034^zf-C2H2_11|141-150|0.057^zf-C2H2_jaz|141-150|0.17^Zn-ribbon_8|141-150|0.039^TBPIP_C|141-162|0.44^XPA_N|142-157|0.022^C1_4|142-177|0.08^YhfH|142-149|0.058^zf-C2HC_2|142-150|0.34^Zn_ribbon_recom|142-154|0.071^PknG_rubred|143-185|0.062^FYDLN_acid|143-183|0.14^Zn_ribbon_SprT|143-175|0.71^zf-H2C2_2|154-179|3e-10^DUF6076|159-204|0.0089^zf-RING_7|161-174|0.23^zf-AN1|166-177|0.049^zf-C2H2|168-190|1.6e-08^zf-C2H2_4|168-190|4.6e-06^zf-C2H2_6|168-190|0.00014^zf_UBZ|168-180|0.013^zf-C2H2_11|168-189|0.00019^zf-C2H2_jaz|168-188|0.092^Zn-ribbon_8|168-207|2.7e-05^TBPIP_C|168-191|0.0076^DNA_RNApol_7kD|168-176|0.34^Zn_ribbon_SprT|168-205|0.66^XPA_N|169-180|0.0082^C1_4|169-205|0.022^YhfH|169-178|0.082^PknG_rubred|169-206|0.0073^zf-C2HC_2|169-189|0.00038^Zn_ribbon_recom|169-187|0.038^MRP-S23|170-195|0.16^zf-H2C2_2|182-206|7e-12^YEATS|184-202|2.9^zf-RING_7|187-202|0.0047^GAGA|191-219|0.069^FYDLN_acid|193-223|0.067^zf-trcl|194-205|0.055^zf-AN1|194-205|0.072^zf-C2H2|196-218|1.5e-07^zf-C2H2_4|196-218|0.00012^zf-C2H2_6|196-218|1.8e-06^zf_UBZ|196-214|0.0016^zf-C2H2_jaz|196-216|0.0016^Zn-ribbon_8|196-206|0.016^TBPIP_C|196-218|0.18^DNA_RNApol_7kD|196-205|0.15^Zn_ribbon_SprT|196-233|0.0099^XPA_N|197-208|0.0024^zf-C2H2_11|197-217|0.3^YhfH|197-205|0.099^zf-C2HC_2|197-217|0.17^Zn_ribbon_recom|197-209|0.046^C1_4|198-234|0.012^Gag_p30|200-225|1.6^zf-H2C2_2|211-235|1.2e-12^zf-RING_7|215-230|0.011^YEATS|217-230|2.7^DUF6076|217-233|0.028^FYDLN_acid|221-250|0.33^zf-trcl|222-234|0.041^zf-AN1|222-233|0.046^zf-C2H2|224-246|1.3e-08^zf-C2H2_4|224-246|8.5e-06^zf-C2H2_6|224-246|6.8e-06^zf_UBZ|224-243|0.00098^zf-C2H2_11|224-245|0.0012^zf-C2H2_jaz|224-244|0.0016^Zn-ribbon_8|224-259|0.00018^TBPIP_C|224-247|0.016^DNA_RNApol_7kD|224-233|0.13^Zn_ribbon_SprT|224-261|0.0011^XPA_N|225-236|0.0012^YhfH|225-233|0.079^PknG_rubred|225-269|0.0048^zf-C2HC_2|225-245|0.47^Zn_ribbon_recom|225-238|0.0098^C1_4|226-263|0.019^MRP-S23|226-251|0.5^zf-H2C2_2|239-261|6.1e-12^zf-RING_7|243-258|0.083^YEATS|244-258|2.5^DUF6076|245-261|0.042^GAGA|248-274|1.5^zf-trcl|250-293|0.00022^zf-AN1|250-261|0.031^FYDLN_acid|251-281|0.28^zf-C2H2|252-274|1.7e-06^zf-C2H2_4|252-274|0.0016^zf-C2H2_6|252-271|5.9e-06^zf_UBZ|252-270|0.0042^zf-C2H2_11|252-273|0.0054^zf-C2H2_jaz|252-272|0.028^Zn-ribbon_8|252-262|0.0066^TBPIP_C|252-274|0.16^DNA_RNApol_7kD|252-258|0.035^Zn_ribbon_SprT|252-292|0.06^XPA_N|253-262|0.01^YhfH|253-261|0.093^zf-C2HC_2|253-261|4.8^Zn_ribbon_recom|253-266|0.052^C1_4|254-289|0.067^zf-H2C2_2|266-291|7.5e-12^YEATS|271-286|2.5^zf-RING_7|272-286|0.17^DUF6076|272-319|0.017^GAGA|276-304|0.0036^zf-AN1|278-289|0.04^zf-C2H2|280-302|2.2e-08^zf-C2H2_4|280-302|3.4e-05^zf-C2H2_6|280-299|1.1e-05^zf_UBZ|280-299|0.00069^zf-C2H2_11|280-301|0.0088^zf-C2H2_jaz|280-300|0.0027^Zn-ribbon_8|280-297|0.00096^TBPIP_C|280-302|0.12^DNA_RNApol_7kD|280-286|0.036^Zn_ribbon_SprT|280-319|0.0095^XPA_N|281-292|0.0019^C1_4|281-331|0.00016^YhfH|281-291|0.032^PknG_rubred|281-320|0.015^zf-C2HC_2|281-293|0.38^Zn_ribbon_recom|281-312|0.2^Gag_p30|292-357|0.018^zf-H2C2_2|294-319|1.5e-11^zf-RING_7|300-314|0.13^GAGA|304-326|0.49^FYDLN_acid|305-332|0.098^zf-trcl|306-317|0.055^zf-AN1|306-317|0.077^zf-C2H2|308-330|1.7e-08^zf-C2H2_4|308-330|0.00025^zf-C2H2_6|308-331|0.046^zf_UBZ|308-320|0.0032^zf-C2H2_jaz|308-327|0.41^Zn-ribbon_8|308-343|0.00034^TBPIP_C|308-327|0.18^DNA_RNApol_7kD|308-317|0.25^Zn_ribbon_SprT|308-345|0.013^XPA_N|309-320|0.0053^zf-C2H2_11|309-329|0.14^YhfH|309-319|0.036^zf-C2HC_2|309-326|0.0008^C1_4|310-358|0.01^PknG_rubred|310-353|0.21^zf-H2C2_2|326-346|9.2e-06^zf-RING_7|329-342|0.025^zf-AN1|333-345|0.097^zf-trcl|334-349|0.0026^TBPIP_C|334-359|0.0043^DUF6076|334-378|0.26^zf-C2HC_2|335-357|0.033^zf-C2H2|336-358|6.7e-08^zf-C2H2_4|336-358|8e-05^zf-C2H2_6|336-358|4.2e-05^zf_UBZ|336-346|0.013^zf-C2H2_11|336-357|4.5e-05^zf-C2H2_jaz|336-355|0.042^Zn-ribbon_8|336-372|0.00013^DNA_RNApol_7kD|336-346|0.13^Zn_ribbon_SprT|336-372|0.032^XPA_N|337-348|0.004^YhfH|337-345|0.12^Zn_ribbon_recom|337-366|0.3^C1_4|338-373|0.065^MRP-S23|339-363|7.9^YEATS|349-370|1.4^zf-H2C2_2|350-374|3.7e-12^zf-RING_7|355-370|0.0052^GAGA|360-385|0.54^zf-trcl|362-373|0.04^zf-AN1|362-373|0.071^PknG_rubred|362-403|0.0098^FYDLN_acid|362-376|0.38^zf-C2H2|364-386|2.9e-09^zf-C2H2_4|364-386|0.00033^zf-C2H2_6|364-386|0.023^zf_UBZ|364-375|0.0036^zf-C2H2_jaz|364-384|0.019^Zn-ribbon_8|364-399|0.0072^TBPIP_C|364-385|0.21^DNA_RNApol_7kD|364-372|0.3^Zn_ribbon_SprT|364-403|0.19^XPA_N|365-376|0.0027^zf-C2H2_11|365-385|0.43^YhfH|365-372|0.13^zf-C2HC_2|365-385|0.051^FYDLN_acid|365-406|0.074^C1_4|366-415|0.0092^MRP-S23|367-391|0.82^Gag_p30|376-442|0.12^zf-H2C2_2|378-403|2e-12^zf-RING_7|383-398|0.0049^DUF6076|385-401|0.2^YEATS|386-398|2.4^GAGA|388-413|0.27^zf-trcl|390-401|0.043^zf-AN1|390-401|0.072^zf-C2H2|392-414|9.1e-09^zf-C2H2_4|392-414|0.00013^zf-C2H2_6|392-414|0.0043^zf_UBZ|392-404|0.0025^zf-C2H2_jaz|392-412|0.0031^Zn-ribbon_8|392-403|0.0097^TBPIP_C|392-405|0.31^DNA_RNApol_7kD|392-401|0.16^XPA_N|393-404|0.002^zf-C2H2_11|393-404|0.72^YhfH|393-403|0.018^zf-C2HC_2|393-405|0.11^Zn_ribbon_recom|393-402|1.3^C1_4|394-430|0.038^zf-H2C2_2|410-431|4.2e-11^zf-RING_7|411-426|0.01^DUF6076|412-429|0.016^FYDLN_acid|417-445|0.57^YEATS|417-426|4.5^zf-trcl|418-430|0.05^zf-AN1|418-429|0.042^zf-C2H2|420-442|1.3e-08^zf-C2H2_4|420-442|8.5e-06^zf-C2H2_6|420-442|6.8e-06^zf_UBZ|420-439|0.00098^zf-C2H2_11|420-441|0.0013^zf-C2H2_jaz|420-440|0.0016^Zn-ribbon_8|420-455|0.00053^TBPIP_C|420-443|0.015^DNA_RNApol_7kD|420-429|0.15^Zn_ribbon_SprT|420-455|1.1^XPA_N|421-432|0.0012^YhfH|421-429|0.082^zf-C2HC_2|421-441|0.47^Zn_ribbon_recom|421-435|0.0074^C1_4|422-470|0.0067^MRP-S23|422-447|0.48^PknG_rubred|422-465|0.0054^zf-H2C2_2|435-457|3.4e-12^zf-RING_7|439-454|0.011^YEATS|440-454|2^DUF6076|441-461|0.0071^zf-trcl|446-487|5.6e-06^zf-AN1|446-457|0.048^zf-C2H2|448-470|5.3e-06^zf-C2H2_4|448-470|0.0052^zf-C2H2_6|448-467|0.0028^zf_UBZ|448-467|0.0012^zf-C2H2_11|448-469|0.013^zf-C2H2_jaz|448-468|0.0081^Zn-ribbon_8|448-457|0.012^TBPIP_C|448-470|0.012^DNA_RNApol_7kD|448-455|0.19^XPA_N|449-460|0.0038^YhfH|449-456|0.11^zf-C2HC_2|449-457|5.3^Zn_ribbon_recom|449-465|1^C1_4|450-499|0.00098^Gag_p30|460-526|0.023^zf-H2C2_2|462-487|2.3e-12^zf-RING_7|468-482|0.17^YEATS|468-482|2.8^DUF6076|468-489|0.016^GAGA|472-494|7.9^FYDLN_acid|473-501|0.46^zf-AN1|474-485|0.034^zf-C2H2|476-498|1.4e-08^zf-C2H2_4|476-498|0.00011^zf-C2H2_6|476-498|0.00013^zf_UBZ|476-487|0.025^zf-C2H2_11|476-485|0.11^zf-C2H2_jaz|476-492|0.03^Zn-ribbon_8|476-515|2.6e-05^TBPIP_C|476-486|0.39^DNA_RNApol_7kD|476-482|0.033^XPA_N|477-488|0.0029^YhfH|477-487|0.014^PknG_rubred|477-486|4.4^zf-C2HC_2|477-489|0.093^Zn_ribbon_recom|477-486|0.63^C1_4|478-514|0.015^zf-H2C2_2|494-515|4.6e-06^zf-RING_7|497-510|0.027^PknG_rubred|499-549|0.0003^DUF6076|499-517|0.6^zf-AN1|501-513|0.093^TBPIP_C|502-527|0.0061^zf-trcl|503-539|0.3^zf-C2HC_2|503-525|0.033^Zn_ribbon_recom|503-540|0.0066^zf-C2H2|504-526|1.4e-08^zf-C2H2_4|504-526|4.4e-06^zf-C2H2_6|504-527|6.1e-08^zf_UBZ|504-523|0.00056^zf-C2H2_11|504-525|0.00073^zf-C2H2_jaz|504-524|0.0023^Zn-ribbon_8|504-539|0.00011^DNA_RNApol_7kD|504-513|0.18^Zn_ribbon_SprT|504-539|0.002^XPA_N|505-516|0.0015^YhfH|505-513|0.095^C1_4|506-554|0.006^MRP-S23|506-531|0.43^zf-H2C2_2|518-542|2.3e-11^zf-RING_7|523-538|0.059^DUF6076|525-585|0.075^YEATS|528-538|5.5^FYDLN_acid|529-551|0.26^zf-AN1|530-541|0.044^zf-C2H2|532-554|6.1e-08^zf-C2H2_4|532-554|0.00013^zf-C2H2_6|532-554|0.00066^zf_UBZ|532-544|0.036^zf-C2H2_11|532-553|0.016^zf-C2H2_jaz|532-552|0.02^Zn-ribbon_8|532-567|0.0043^TBPIP_C|532-554|0.034^DNA_RNApol_7kD|532-538|0.024^XPA_N|533-540|0.088^YhfH|533-540|0.16^zf-C2HC_2|533-553|0.35^C1_4|534-582|0.055^YEATS|541-566|0.079^zf-H2C2_2|547-570|1.7e-11^zf-RING_7|552-566|0.0058^GAGA|555-578|1.5^PknG_rubred|556-582|0.042^FYDLN_acid|557-585|0.13^zf-trcl|558-573|0.0019^zf-AN1|558-569|0.032^zf-C2H2|560-582|1.2e-06^zf-C2H2_4|560-582|0.0014^zf-C2H2_6|560-582|0.00029^zf_UBZ|560-570|0.0079^zf-C2H2_jaz|560-579|0.0052^Zn-ribbon_8|560-570|0.04^TBPIP_C|560-579|0.55^XPA_N|561-570|0.0078^zf-C2H2_11|561-581|0.038^YhfH|561-570|0.077^zf-C2HC_2|561-579|0.16^Zn_ribbon_recom|561-591|0.086^DNA_RNApol_7kD|561-566|0.79^C1_4|562-610|0.0043^zf-H2C2_2|575-599|4.9e-11^zf-RING_7|581-594|0.14^DUF6076|581-597|0.78^zf-C2H2_11|586-606|0.025^zf-trcl|586-597|0.17^zf_UBZ|587-598|0.0072^zf-AN1|587-597|0.16^TBPIP_C|587-610|0.03^zf-C2H2|588-610|1.3e-09^zf-C2H2_4|588-610|1.1e-05^zf-C2H2_6|588-610|0.00032^zf-C2H2_jaz|588-608|0.00053^Zn-ribbon_8|588-598|0.0017^DNA_RNApol_7kD|588-596|0.27^Zn_ribbon_SprT|588-607|0.069^XPA_N|589-597|0.014^YhfH|589-598|0.047^zf-C2HC_2|589-609|0.03^Zn_ribbon_recom|589-601|0.22^zf-H2C2_2|603-613|0.19 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.41Mb] 5 16 5 7.92 ONLY_REF_SPLICE YES_LDAS 0.1569 GT 1.3383 AG 1.6402 ENST00000504187.5 1-430 ENST00000609518.5 131-1851 chr4|+|[0]499336-499489[0]|[1]500396-500601[2]|[0]501101-501170[0]<==>chr4|+|[1]85731-87451[2] atgcggctgggctccgggactttcgctacctgttgcgtagcgatcgaggtgctagggatcgcggtcttccttcggggattcttcccggctcccgttcgttcctctgccagagcggaacacggagcggagcccccagcgcccgaaccctcggctggagccagttctaactggaccacgctgccaccacctctcttcagtaaagttgttattgttctgatagatgccttgagagatgattttgtgtttgggtcaaagggtgtgaaatttatgccctacacaacttaccttgtggaaaaaggagcatctcacagttttgtggctgaagcaaagccacctacagttactatgcctcgaatcaaggtgtccagcctactgacagcagctttgaagtacatagtgcatttcccaagaaccgtgggtaaagaaaaaaCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAATACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTTTAAATGTACAGAATGTGGCAGATCGTTTTACATGTCACACCTAACTCAACATACAGGAATTCATGCTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGTTCTGAACGAACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAACACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGATGGTCCACAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAAAAATGTGGCAAAGCTTTTAACCAATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTACACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAACACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATATGGTCCGCAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCTACAAATGCAAAGAATGTGGCAAAGCCTATAACTTATCCTCAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGATAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACTGTACACAAGCGAATTCATACTGGCAAGGAACATAGTTGA MRLGSGTFATCCVAIEVLGIAVFLRGFFPAPVRSSARAEHGAEPPAPEPSAGASSNWTTLPPPLFSKVVIVLIDALRDDFVFGSKGVKFMPYTTYLVEKGASHSFVAEAKPPTVTMPRIKVSSLLTAALKYIVHFPRTVGKEKTICSPFSQDLSPVQGIEDSFHKLILKRYEKCGHENLQLRKGCKRVNECKVQKGVNNGVYQCLSTTQSKIFQCNTCVKVFSKFSNSNKHKIRHTGEKPFKCTECGRSFYMSHLTQHTGIHAGEKPYKCEKCGKAFNRSTSLSKHKRIHTGEKPYTCEECGKAFRRSTVLNEHKKIHTGEKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCKECGKAFRWSTSLNEHKNIHTGEKPYKCKECGKAFRQSRSLNEHKNIHTGEKPYTCEKCGKAFNQSSSLIIHRSIHSEQKLYKCEECGKAFTWSSSLNKHKRIHTGEKPYTCEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILHKRIHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEECGKAFIWSASLNEHKNIHTGEKPYKCKECGKAFNQSSGLIIHRSIHSEQKLYKCEECGKAFTRSTALNEHKKIHSGEKPYKCKECGKAYNLSSTLTKHKRIHTGEKPFTCEECGKAFNWSSSLTKHKIIHTGEKSYKCEECGKAFNRPSTLTVHKRIHTGKEHS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31690 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1634 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1267992:- chr1:1189289-1209244:- chr1:1203372:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none UQ_con|56-141|2.5e-17^MutL_C|148-192|1.8e-05 ["RLF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:38.89Mb] 1847 2709 1847 2342.82 ONLY_REF_SPLICE YES_LDAS 51.1108 GT 1.9086 AG 1.8256 ENST00000372771.5 1-237 ENST00000400930.8 1-828 chr1|+|[0]40161400-40161636[2]<==>chr1|-|[2]1255203-1255487[0]|[2]1256045-1256125[0]|[2]1256992-1257130[2]|[1]1257208-1257310[1]|[0]1263346-1263386[2]|[1]1264783-1264830[2]|[1]1267862-1267992[0] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagATGAGCAGCACCAGCAGTAAGAGGGCTCCGACCACGGCAACCCAGAGGCTGAAGCAGGACTACCTTCGCATTAAGAAAGACCCGGTGCCTTACATCTGTGCCGAGCCCCTCCCTTCGAATATTCTCGAGTGGTTCAAGCGATTCTCCTGGCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACTATGTCGTCCGAGGCCCAGAGATGACCCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAGGCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACGAAAAGACAACTGGCAGTGCAGAGTTTAGCATTTAATTTGAAAGATAAAGTCTTTTGTGAATTATTTCCTGAAGTCGTGGAGGAGATTAAACAAAAACAGAAAGCACAAGACGAACTCAGTAGCAGACCCCAGACTCTCCCCTTGCCAGACGTGGTTCCAGACGGGGAGACGCACCTCGTCCAGAACGGGATTCAGCTGCTCAACGGGCATGCGCCGGGGGCCGTCCCAAACCTCGCAGGGCTCCAGCAGGCCAACCGGCACCACGGACTCCTGGGTGGCGCCCTGGCGAACTTGTTTGTGATAGTTGGGTTTGCAGCCTTTGCTTACACGGTCAAGTACGTGCTGAGGAGCATCGCGCAGGAGTGA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQMSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWFKRFSWLSLLSSWDYRHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31692 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1635 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1263386:- chr1:1189289-1209244:- chr1:1198766:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none MutL_C|132-176|1.6e-05 ["RLF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:38.89Mb] 650 1553 650 256.89 ONLY_REF_SPLICE YES_LDAS 11.0629 GT 1.9086 AG 1.9329 ENST00000372771.5 1-237 ENST00000360466.6 132-780 chr1|+|[0]40161400-40161636[2]<==>chr1|-|[2]1255203-1255487[0]|[2]1256045-1256125[0]|[2]1256992-1257130[2]|[1]1257208-1257310[1]|[0]1263346-1263386[2] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagGCACTATGTCGTCCGAGGCCCAGAGATGACCCCTTATGAAGGTGGCTATTATCATGGAAAACTAATTTTTCCCAGAGAATTTCCTTTCAAACCTCCCAGTATCTATATGATCACTCCCAACGGGAGGTTTAAGTGCAACACCAGGCTGTGTCTTTCTATCACGGATTTCCACCCGGACACGTGGAACCCGGCCTGGTCTGTCTCCACCATCCTGACTGGGCTCCTGAGCTTCATGGTGGAGAAGGGCCCCACCCTGGGCAGTATAGAGACGTCGGACTTCACGAAAAGACAACTGGCAGTGCAGAGTTTAGCATTTAATTTGAAAGATAAAGTCTTTTGTGAATTATTTCCTGAAGTCGTGGAGGAGATTAAACAAAAACAGAAAGCACAAGACGAACTCAGTAGCAGACCCCAGACTCTCCCCTTGCCAGACGTGGTTCCAGACGGGGAGACGCACCTCGTCCAGAACGGGATTCAGCTGCTCAACGGGCATGCGCCGGGGGCCGTCCCAAACCTCGCAGGGCTCCAGCAGGCCAACCGGCACCACGGACTCCTGGGTGGCGCCCTGGCGAACTTGTTTGTGATAGTTGGGTTTGCAGCCTTTGCTTACACGGTCAAGTACGTGCTGAGGAGCATCGCGCAGGAGTGA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQALCRPRPRDDPL*RWLLSWKTNFSQRISFQTSQYLYDHSQREV*VQHQAVSFYHGFPPGHVEPGLVCLHHPDWAPELHGGEGPHPGQYRDVGLHEKTTGSAEFSI*FER*SLL*IIS*SRGGD*TKTESTRRTQ*QTPDSPLARRGSRRGDAPRPERDSAAQRACAGGRPKPRRAPAGQPAPRTPGWRPGELVCDSWVCSLCLHGQVRAEEHRAGV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31693 RLF::UBE2J2 ENSG00000117000.9::ENSG00000160087.21 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1636 TRUE 2953 TRUE 1122 RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ UBE2J2 ENSG00000160087.21 protein_coding - - chr1:1253909-1273864:- chr1:1257310:- chr1:1189289-1209244:- chr1:1192690:- chr1:40183224,chr1:40183224,chr1:40183224,chr1:40183225 chr1:1272060,chr1:1272061,chr1:1272057,chr1:1272059 NA NA chr1:40648896,chr1:40648896,chr1:40648896,chr1:40648897 chr1:1207440,chr1:1207441,chr1:1207437,chr1:1207439 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["RLF:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:38.89Mb] 449 1107 449 109.29 ONLY_REF_SPLICE YES_LDAS 6.8105 GT 1.9086 AG 1.8892 ENST00000372771.5 1-237 ENST00000464036.5 295-318 chr1|+|[0]40161400-40161636[2]<==>chr1|-|[2]1257287-1257310[0] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagGTGGCTATTATCATGGAAAACTAA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQVAIIMEN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31696 TCF12::CGNL1 ENSG00000140262.18::ENSG00000128849.11 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TCF12 ENSG00000140262.18 protein_coding + + chr15:56918623-57299281:+ chr15:56921098:+ chr15:57210821-57591479:+ chr15:57213296:+ CGNL1 ENSG00000128849.11 protein_coding + + chr15:57375967-57550717:+ chr15:57437985:+ chr15:57668165-57842915:+ chr15:57730183:+ chr15:57042671,chr15:57042668 chr15:57392809,chr15:57392803 NA NA chr15:57334869,chr15:57334866 chr15:57685007,chr15:57685001 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TCF12:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.08Mb];NEIGHBORS[76686] 96 142 96 142 ONLY_REF_SPLICE YES_LDAS 2.9033 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE transcription factor 12 (HTF4, helix-loop-helix transcription factors 4) 1 extraskeletal myxoid chondrosarcoma mesenchymal fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31697 TUT1::SZT2 ENSG00000149016.16::ENSG00000198198.17 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1641 FALSE NA FALSE NA TUT1 ENSG00000149016.16 protein_coding - - chr11:62575045-62591637:- chr11:62589031:- chr11:62342517-62359109:- chr11:62356503:- SZT2 ENSG00000198198.17 protein_coding + + chr1:43389882-43454247:+ chr1:43403177:+ chr1:43855553-43919918:+ chr1:43868848:+ chr11:62587377,chr11:62587379 chr1:43394083,chr1:43394081 NA NA chr11:62354849,chr11:62354851 chr1:43859754,chr1:43859752 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF4632|10-36|0.66^zf-met|54-78|2.4e-08^RRM_7|94-121|1.6e-05^RRM_1|96-158|3e-08^TUTase|194-257|1.8e-06 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr1] 28 36 28 36 ONLY_REF_SPLICE YES_LDAS 0.7808 GT 1.6895 AG 1.6402 ENST00000308436.11 1-387 ENST00000634258.3 28-10299 chr11|-|[2]62589031-62589221[1]|[0]62591404-62591599[0]<==>chr1|+|[0]43403177-43403302[2]|[0]43403601-43403774[2]|[0]43404380-43404550[2]|[0]43415082-43415213[2]|[0]43415960-43416101[0]|[1]43416535-43416641[2]|[0]43419734-43419944[0]|[1]43420153-43420323[0]|[1]43420749-43420983[1]|[2]43421174-43421303[2]|[0]43422083-43422225[1]|[2]43422480-43422632[1]|[2]43422769-43422883[2]|[0]43423099-43423316[1]|[2]43424217-43424432[1]|[2]43424784-43424862[2]|[0]43425113-43425207[1]|[2]43425474-43425642[2]|[0]43425835-43425949[0]|[1]43426038-43426151[0]|[1]43426368-43426538[0]|[1]43426715-43426809[2]|[0]43427056-43427179[0]|[1]43427281-43427445[0]|[1]43427530-43427734[1]|[2]43428003-43428118[0]|[1]43428240-43428486[1]|[2]43429703-43429844[2]|[0]43430011-43430103[2]|[0]43430311-43430389[0]|[1]43430496-43430789[0]|[1]43430949-43431090[1]|[2]43431265-43431372[1]|[2]43431460-43431523[2]|[0]43431716-43431901[2]|[0]43432272-43432439[2]|[0]43432517-43432604[0]|[1]43432728-43432799[0]|[1]43432989-43433190[1]|[2]43434386-43434485[2]|[0]43435200-43435329[0]|[1]43437171-43437323[0]|[1]43437406-43437508[1]|[2]43437595-43437700[2]|[0]43437791-43437902[0]|[1]43438699-43438817[2]|[0]43438929-43439093[2]|[0]43439358-43439442[0]|[1]43439605-43439769[0]|[1]43439881-43440048[0]|[1]43440453-43440586[2]|[0]43441214-43441380[1]|[2]43441504-43441601[0]|[1]43441686-43441818[1]|[2]43442000-43442130[0]|[1]43442268-43442368[2]|[0]43442442-43442618[2]|[0]43442819-43443086[0]|[1]43443188-43443267[2]|[0]43443352-43443477[2]|[0]43443597-43443796[1]|[2]43445894-43445984[2]|[0]43446179-43446259[2]|[0]43446342-43446416[2]|[0]43446955-43447168[0]|[1]43447545-43447698[1]|[2]43447849-43447971[1]|[2]43448079-43448484[2]|[0]43448612-43448728[2]|[0]43450103-43450171[2]|[0]43450337-43450480[2] atgtcacttcctatcggatcggcggaagttgcttccgagcgcgttgagctttggcgaagtgggttccggtggtggcagaggtgcttgtgtttttgtcggtacaggagagtcgctatggcggcggtggattcggatgtcgaatcgctgccgcgtggggggttccgctgctgcctctgccacgttactacagccaaccgacccagccttgatgcccacttgggaggcagaaagcaccggcacctggtagaactacgagctgcgagaaaggcccagggacttcgaagtgtgtttgtcagtggctttcccagggatgtggattctgctcagctctctgagtacttcctagcatttggacctgtggccagtgttgtcatggacaaggacaagGTGGAAGAAGCTGGGCAGGTGTTCCTGTTAATGAAAAAGGATTATCGAATCTCCCGAAATGTTCGCCTGGCTTGGTTCCTCAGTCATCTGCACCAAACTGTGCAGGCCACACCCCAGGAGATGCTGCTTCAGTCTGAACAGGAATTGGAAGTCCTCAGTGTCCTGCCCCCTGGGTGGCAGCCAGATGAACCAGTGGTCCCAAGGCCATTCCTCCTGGTACCTTCCACCCGGGTCACCTTCCTGGCTTGGCAGTATCGGTTTGTCATTGAGTTGGACCTTAGCCCATCTACTGGCATTGTGGATGATTCCACAGGGGAGATCTTGTTTGATGAAGTTTTCCATGCCCTGTCCCGCTGCTTAGGCGGGCTGCTTCGGCCCTTCCGAGTGCCTGGATCTTGCATCGACTTCCAGCCTGAGATCTATGTAACTATCCAGGCCTACTCCTCCATCATTGGACTGCAGTCCCACCAGGTGCTGGTACAGGGCTGCCTCTTGGACCCTTCCCAGCGGGAGGTGTTCCTGCAGCAGATATATGAGCAGCTCTGCCTCTTTGAGGATAAGGTGGCCACCATGCTGCAGCAGCAGTACGATCCCCAGAGCCAGGCAGAAGACCAGTCCCCAGACTCAGGGGACCTACTGGGCCGGAAGGTAGGCGTCTCCATGGTGACAGCTGATCTTGGGCTGGTCAGTATGATTCGTCAGGGCATCTTGGCACTGCAGTTACTACCCTCGAACTCTAGTGCAGGGATTATCGTGATCACGGATGGGGTGACCAGTGTACCTGATGTTGCTGTCTGTGAGACACTGCTGAACCAGCTTCGCAGTGGCACTGTGGCTTGTTCCTTTGTCCAGGTGGGAGGAGTTTACTCTTATGACTGCAGTTTTGGCCATGTGCCCAATGTGGAATTAATGAAGTTCATCGCAATGGCAACATTTGGGTCCTACCTGTCCACTTGTCCTGAGCCGGAGCCAGGCAACCTGGGTCTGACTGTCTACCACCGGGCATTTCTCCTCTATTCCTTCCTGCGCAGTGGGGAAGCACTGAACCCTGAATATTACTGCGGCTCTCAGCACCGCCTATTTAATGAGCACCTGGTCTCTGCAAGCAGCAACCCTGCCCTGGCCTTGCGCCGGAAGAAGCACACTGAGAAGGAGGTGCCAGCCGACTTGGTCAGCACTGTGTCCGTACGGCTTCGAGAGGGCTACAGTGTCCGAGAGGTCACACTGGCCAAAGGAGGGTCCCAATTGGAGGTAAAGCTGGTGCTGCTGTGGAAACACAACATGCGCATTGAGTATGTGGCTATGGCACCCTGGCCCCTGGAGCCTGAGGGCCCTCGAGTAACACGGGTGGAAGTGACGATGGAAGGCGGCTACGACATTTTGCATGATGTGTCCTGTGCACTAAGGCAGCCCATTCGTTCATTGTATCGTACCCATGTTATCCGGCGTTTCTGGAACACGCTGCAGAGCATCAACCAGACAGACCAGATGCTTGCCCACCTTCAGTCCTTCTCCTCAGTGCCTGAGCATTTCACGCTTCCTGACAGCACCAAGAGCGGAGTGCCACTCTTCTACATCCCTCCAGGCTCCACCACCCCGGTGCTCTCCCTCCAGCCCAGTGGTTCTGACTCATCCCATGCCCAGTTTGCTGCCTACTGGAAGCCAGTGCTGTCCATGGATGCAAATTCCTGGCAGCGATGGCTGCACATGCATCGCCTGGTGCTAATCCTGGAGCATGACACACCAATCCCCAAGCACTTGCACACCCCGGGCAGCAATGGGCGCTACAGCACTATCCAGTGCAGGATCTCCCACTCCTCCCTGACCTCTCTGCTGCGGGACTGGAGCAGCTTCGTACTAGTCGAGGGCTATTCTTATGTTAAGCTGCTCTCCAGTGCCCCAGACCAGCCCCCCAATTCCTTCTACATGGTCCGTATCATTTCCAAGGCCCCATGCATGGTTCTTCGCCTGGGTTTTCCCATTGGCACACCAGCACCGGCCCGGCACAAGATTGTGTCAGGCTTGAGGGAAGAGATCCTGCGGCTGCGTTTCCCCCACCGGGTACAAAGCAAGGAGCCAACGCCCAAGGTGAAACGAAAAGGGCTAGGGGGTGCTGGTGGGGGCAGCTCTCCCTCCAAGTCACCCCCCGTGCTGGGGCCACAGCAGGCCCTGTCTGACCGGCCCTGCCTTGTGGTCCTGCATAAGCCACTGGACAAACTGCTCATCAGGTATGAGAAGCTGCCCTTGGACTACCGGGCACCCTTCTTGCTGACATTGGAGCCACCAGGTCCACTGCCCTTGGTGTCAGGCCGCTCAGCCTCTTCTAGCCTGGCGTCACTGTCCCGCTACCTCTACCATCAGCGCTGGCTTTGGAGTGTCCCGTCAGGACTGGCCCCTGCGCTGCCTCTCAGTGCCATTGCCCAGCTCCTCTCCATCCTCACTGAAGTCCGACTTTCTGAAGGATTCCACTTCGCCTGCAGTGGGGAAGGAATCATCAACATGGTTCTGGAGCTTCCAATTCAGAATGAACCACCAGGGCAGGCTGCAGCTGAAGAGAAGCACACCTGTGTTGTCCAGTACATCCTCTTCCCCCCACACTCTACCTCCACCAAAGACAGCTTCTCGACAGATGATGACAATGATGTGGAAGTGGAGGCCCTGGAGGGAGACTCAGAGCTCAATCTGGTCACTGAGGTGTGGGTGGAGCCACAGTATGGGCGAGTGGGACCTGGCCCTGGAATCTGGAAGCACCTCCAGGACCTGACGTATTCTGAGATCCCGCAAGCTCTCCACCCACGGGATGCTGCCTGCATAGGCTCCATGCTGAGCTTTGAATACCTGATACAGCTGTGTCAGAGCAAGGAATGGGGTCCTCTGCCCCCAGAGCCGAGGGTCTCTGATGGATTGGATCAGGGAGGAGACACCTGCGTCCATGAGATCCCTTTCCATTTTGACCTAATGGGATTGCTGCCACAGTGCCAGCAGCTCCAGATGTTCTTCCTCTTGCTTGCCAGAGAGCCAGAGGGTGTCCCTTTCGCCGAGGGGTCCTGTCCTGCCAACGACATGGTGCTGTGCCTGCTGCACAGCTGCCTGGGGCAGGAGCTGAGTGACCGGGAGATCCCACTGACCCCCGTTGACCAGGCTGCCTTCTTGAGTGAGGTGCTGCGGCGGACCTGCCACGTTCCAGGTGCCGAGGGGCCACTGCTGGGGGTTCATGGGATCCCGAAGGAGCAAGCAGTCGGCAGCACCCAGGCCACAGGAGACTCCGCTTTTACTTCCCTGAGTGTAGGTCTTCCTGAAACTCTCAAGCCTCTCATCTCTGCCCAGCCCCCTCAGTGGCGCTGCTATGCAAGGCTTGTGAACCCCCAGCATGTGTTTCTGACTTTTCTCCCAGCTACCTTCTCAGATGTCCAGCGTCTGGCTGCCTGTGGCCTGGAGGGACCCCCTCAAGAGGAGACAAAGCCTAAGTTTGGGGATTGGAGTGGGGCTCCCAGTCTGAAAGATCTAGGAGGAACTGGGATCAAAGCTACAAAGTCCCACGTCCCTGTCCTCAGTGTGACCCTGGCTAGTGACAATGCCCAGAATCAAGGAGAGCTAAGTCCACCATTCCGTCGAGACTTACAGGCTTACGCTGGGCGTCAGGCTTCCCAGACAGAGAGTGCGGATGGGCCCCGGACCCGGTGTCCTGTCTACATCTACAGCTGTTCACTGGAAGCGCTGAGGGAACAAATGGTTGGCATGCAGCCCCCTCAGGCGCCCCGAGACCTCATCTTCCGGACTCAGTTCCTCGACCACCCCTCCCCATCCTCAGCCTGGATGGAACCCCGGTACAAGGAGGCAGCTAACCACTGTGCCCTGCTGCAGGAGCATGCACAGCGGTGCTATGTCCGTGGGCTATTCCGCAGCTTGCAGCAAGCACAGAGTGTGACCTCCCAGGATTTGCTGACAGCGGTAGATGCCTGTGAGGAGCTACTACAAGAAATAGACATCACCCCATTTCTCCTTGCATTGTGTGGCCACACTTGGGGTTTGCCTCATGCACCCCCAAGTCCTGGTCCTCTCAGCCCTGGGCCCTTCAGCAGCAGCATGGAGGAGGGTGCTGAACCTCGGGAACGAGCTATCCTAGCTTCTGAATCCAGCATAGAGACCGAGGACCTAAGCGAGCCTGAGTTTCAGAGCACCCGTGTCCCTGGCATTCCAGACCCTGGGCCAGAGATCTCTCTGACAGATGTCTGCCAGCTCAGAGGAGAGGCCCATGGTGCCCTTCATAGCGTCATCCAGGAGAAGTTCCTAGAGATCAGTCGTCTCCACTTCCGCACAGTGCCTTCCAATCCCCACTACTTCTTCTATTGCCCTCCATCCAGCAGGCGAGAAGATGAGGGGCCTCGGGACACAGTAGACAGAAAAATCAGTGACCTGGAGTTTTCAGAGGCTGAGCTTATGGGAGAAGAAGGAGACACATCTGCCTGCTGTGTGGTCACTGAGAGTGACCCAGAGCTAGAGGTAGAATACCGGGAGAGCCGTGAATCAGACCTGGGGCCTGCTGGGCTAGACTCTGCCTCGCTGTCAGACGTAGACACTGTGAATCCTGATGAAGACTCCTTCAGTATCTTGGGGGGCGACTCACCCACTGGGCCTGAGAGCTTCCTTCATGACCTGCCACCGCTCTTCCTGCACCTCACGTGCTCCGTGCGGCTACGTGGGCAGCACAGCTCAGTACCTGTGTGCAGCCTGCCTACCTGCCTGGGCCAGGTGCTTTCCAGTCTGGAGGGCCCCCCAGTTGGAGGCCGAGTTCCCTTGAGGGACCTCAGTGTGACTCTGGATGTCTTCATGCTGACTTTGCCCCTGGAAGTGGAGCTCCCCACGGCCTCGGACCCTCAGCACCACCGGTCAACATCTGAAAGCAGTGCTTCATTTCCACGATCCCCAGGGCAGCCATCATCTTTAAGGTCAGATGATGGCCTCGGGCCCCCACTGCCACCCCCAGAAGAGGAGAGGCACCCAGGACTATCCAATTTGGCCACGCCCCACAGACTGGCTATTGAGACCACCATGAATGAGATCCGCTGGTTGTTGGAAGATGAGATGGTGGGGGCACTCCGAAGAGGGGGCATCCCACAGAGTCCTGCCCTGCACCGCGCAGCTGCCCATATCCATAGTTCTCCTGGACGCTCCACCTGCCTTCGCCAAACTCTGCCACTGAGTTTTGTATTTGGGCCAGAGCGTTCCCTCACACAATTCAAGGAGGAGTTCCGCCGCCTCCATCTCCCTGGCCATGTTCTTCTTGAAGACCCTGACAGTGGCTTCTTCTTTGTGGCAGCTGGCCAACAGCCAGGTGGGTCCCATGGGGAGCCTTCTTCAGCGGCCTGGGCTTGGCACAGTCATGAGGACAGGGCTGAAGGCATCGAAGGGGAGACCCTGACAGCCAGCCCCCAAGCACCTGGGTCCCCAGAGGATTCTGAGGGTGTCCCCCTCATCAGCCTGCCCCGCGTGCCACAGGGAGGGAGTCAGCCTGGGCCCAGCCGGGGATTAAGTCTCATGTCCAGTCAGGGCAGTGTGGACTCAGACCACCTAGGTTATGATGGTGGCAGCAGTGGCTCAGACAGTGAGGGTCCCAATGACACCCTTGGTGAGAAGGCCCCCTTCACATTGCGGACTCCACCTGGGCCAGCACCTCCACAGCCTTCACTCTCAGGCCTCCCTGGGCCCTGCCTGCCTGACTTCTGGCTCATTGTCCGGGTCCTGCAGGACCGTGTGGAAGTGTATGCACATGCACGGAGCCTGATTCGGGAGGATGGGGGGCCGGGCACTGAGTGTCGCCACCTGCAGCAGCTCCTGGTGAGGCGAGTTGGGGAGATCTGCAGGGAGGTCAACCAGCGACTGCTTCTTCAAGACCTTCATGACAGCCACGTGTGTAACTCTCTTCTGGTGGCCGAGAGTGAAGAAGATCTGTGGCGCAGTGAGACTCCCTTCCACTCCCGTCAGCGGGCACCACTGCCCAGTGATGATTATGCTGCTGATGAGAGCTGTGCGCCCCGTGGGTACCTGGCAGCCACAATGCAGTTTGTCCCTGGCCATTTCTCCTGTGACGTTGTGTGGGGAACTGTGATCCGAGTCCATTCACGCCTCAAAATGGGGCCCAGCATGGGGGTCTCTCGGGCCATCCAGGCCCTGCGCTCTGTGCTCAATGCCTTCTCTGTGGTGAACCGGAAAAACATGTTTGTTTACCAGGAGCGAGCAACAAAGGCTGTGTACTATCTTCGGCTCCTAGAGACATCCTGCAGTGACCGGCCATGGAAAGGGGATGCGCTGCCCCCTTCCCTCGCTCTGTCCCGAAGCCAAGAGCCCATCTACTCTGAGGAAGCCTCGGGTCCTCGTTCTCCCTTAGACATGGTCTCTAGCCGCAGTTCAGATGCTGCTCGTCCTGTGGGCCAAGTGGACAGACATATCCAGCTGCTGGTCCATGGTGTTGGGCAGGCAGGTCCTGAGATCACGGATGAGCTCGTGCGAGTTCTATGTCGGCGCCTGGATGAGGCCACGCTGGACGTCATCACAGTTATGCTTGTTCGGAACTGCAAGCTGACACCAGCTGATGTGGAGTTCATCCAGCCCCCTGGAAGTCTCCCCTCAGAGGTGCTGCATCTGGCCCTACCCACCTCCTGCAGGCCCTGGCTTCCAGCCCTGGCATGGTACCTACGGCAGAACTTGCTCATCTTCCTGCACTCTCCCAAGTACACAGATAGCAACAGCCGGAACCACTTCCAACATCCACTCCCACCACAGGGTGGCCTCCCTGACTTGGACATCTACTTGTATAACAAGCCTGGTGGACAGGGCACTGGGGGCAAAGGGGTTGCCTGCATCACTCTAGCCTTTGTGGATGAAGGAGGGGCCCCCTTGTCACTGGCGTTGTGGCCCCCCTCCTCTCCGGGGCCCCCAGACCCACTGCGAGAGGAGGAATTTGAGCAACTGACCCAGGTCATCCGCTGCCCGGTTGTTGTGGACAGTTCTTCAGCTCAGAATGGGGCCCCACGGCTTCGATTGGATGTGTGGGAAAAGGGGAACATTAGTATTGTGCAGCTGGAGGAGAAACTCCGAGGAGCAGCTCGCCAGGCCCTGGCCGATGCCATCATCGAGCTTCAGCTGCTGCCAGCTTCACTATGTACAGAGGACACACCCACAGGAAGTCTCAGGAACGGATCGTTGGAAACTAAGAGCTCTGCAGGCCGAGCTAGCACCTTTCCCCCTGCCCCTGTCCCTGGGGAGCCTGTGACTCCACCCAGCAAAGCGGGCCGGCGTAGCTTCTGGGATATGCTGAGTAAAACAGAATGTGGGGATTTGGGTTCCCCCAAAACAACTGATGACATTGTCCTGGATCGGCCAGAAGACACTCGGGGCCGGAGGCGTCACAAAACCGAGAGTGTTCGGACTCCTGGTGGAGCTGAGCGGGCGCCAGGCTCAGATTCTGGAGCCCAGAGACAAAAGCGCCGGACAACACAGCTAGAAGAGGGTGAGGTGGGGACCCTTCATCCTGTGTTTGCCCGTGTTGCTCAGCGCTGGATGGAGTTTATGGTTCAGATTGGTTGTGCCTCAGTGTCCAGAAGCTCTGCCCACATGGTGTCCCGGTTCCTCCTTCCATCCATCCTGTCTGAGTTCACCGCACTGGTCACCTCAATGGCTGGAGACACCAGTGTCCGCATCTTTGAGCAGCATTTGGGTTCAGAGCCAGAGATCTTCGGCCCTTGTTCCCCTGGGCAACTGGGCCCCTCTCCCCGCCCTGCAGCTGAGCGGCATCTGCTGCTTCTGGGAAGGAACTTCTTGCAGTGGAGGAGACCAACACAGCAGGCTGCCAAAGCCATGCAGCGCTTCGAGCCAGGAGGTGATGGGAGCTCAGGGCGAAATGCTCCCCGGCAGAGGCTCTTGCTACTAGAGGTTGTGGACAAGAAGCTACAGCTGCTGACCTACAACTGGGCTCCAGACCTGGGGGCAGCATTGGGCCGAGCGCTGGTTCGCCTGGTGCAGTGGCAGAATGCACGAGCCCATCTCATCTTCTGCCTACTCAGCCAGAAGCTTGGCCTCTTCCATCATTATGGCCAGTTGGACTTCCCCGTGCGAGATGAAAAGGAGCCAAACCCATTCCTGCTGCCGACCATGGAAGTGGAGACCCTCATCCGGAGTGCAAGTCCCCCGCTGAGCCGTGAGCAGGGCCGACTGAGTGGGTCCTCTCGTGGTGGGGGTCCTCTTCCCCTGGACACATTCCCCTTTGACGAGGCCCTAAGGGATATCACGGCTGCCCGCCCCAGCTCCGTACTTGGTCCTGTGCCCAGACCTCCTGATCCTGTCACCTACCATGGACAACAGTTCCTAGAGATCAAGATGGCAGAGCGCAGAGAGCTGGAGCGCCAGATGAAGATGGAAAACCTGTTTGTAACCTGGCAGCAGCGTTCTACCCCAGCCACCATGCCCATCAGTGCTGGAGAGCTGGAGACCCTGAAGCAGTCATCCCGCCTGGTGCATTACTGTGCAACAGCCATGCTCTTCGACCCAGCTGCCTGGCTGCATGGGCCCCCAGAGACCTCTGGACCCCCTGACGGGCAGCGGCGCCATCGCCCTGAGTCAGGGTCTGGGAGCCGAGAGGCCCCCACAAGCTGTGAATCCTTGGATGTGTCGCCCCCGGGAGCCCGTGAGGAGCCTTGGCTGAAGGAGCTGAGCTTGGCTTTCCTGCAGCAATATGTGCAGTATCTGCAGAGCATAGGTTTTGTGCTGGTACCACTGCGGCCCCCCTCACCCGCCCGCAGCACCAGCCGGCCACGGGCCATGGCTATCCTTGGAACAGAGGGTCGAGGCTCCTTCTCCTGCCCTAAAACCAAGACTGATGGGAGCCCCAAGAGCACTAGCTCTCCGGTAACCACCTACCACCTGCAGCGGGCACTGCCTGGGGGCATCATCCTCATGGAACTGGCATTCCAGGGCTGTTACTTCTGTGTCAAACAGTTTGCCCTGGAATGTTCCCGAATCCCAATGGGGCAGGCTGTCAACTCACAGCTGTCCATGCTGTTCACAGAGGAGTGTGACAAGGTGCGGGACCTGATGCACGTGCACTCGTTCAGCTATGACTTCCATCTGCGCCTCGTGCATCAGCACGTGCTAGGTGCCCATCTGGTGCTGCGGCACGGCTACCACCTCACCACCTTTCTGCGACACTTCCTGGCCCACCACCCTGACGGACCCCACTTTGGCCGCAATCACATTTACCAAGGGACATTGGAGCTCCCCACACCACTCATTGCTGCCCACCAGCTATACAACTACGTGGCTGATCACGCCAGCTCTTACCACATGAAGCCATTGCGAATGGCCCGGCCAGGGGGCCCAGAACACAACGAGTATGCCCTGGTGTCGGCATGGCACAGTTCTGGCTCCTACCTGGACTCTGAGGGACTTCGACACCAGGATGACTTTGATGTGTCTCTGCTTGTCTGTCACTGTGCTGCACCCTTTGAGGAGCAAGGAGAGGCTGAGCGGCACGTTCTGCGGCTACAGTTCTTCGTGGTGCTCACCAGCCAGCGAGAGCTCTTCCCCAGGCTCACTGCTGACATGCGCCGCTTCCGGAAGCCACCCAGACTGCCCCCTGAGCCAGAGGCTCCTGGGAGTTCAGCTGGCAGCCCTGGGGAGGCCTCAGGGCTTATTCTAGCGCCTGGACCGGCTCCTCTGTTCCCACCACTGGCTGCAGAGGTGGGCATGGCACGAGCACGGCTGGCTCAGCTGGTGCGGCTGGCTGGAGGGCACTGCCGTCGGGACACCCTTTGGAAGCGCCTCTTCTTGCTGGAGCCACCGGGGCCTGATCGACTGCGGCTAGGGGGGCGCCTGGCCCTGGCAGAGCTGGAGGAACTCCTAGAAGCAGTCCATGCCAAATCCATTGGGGACATCGACCCCCAGCTGGACTGCTTCCTATCCATGACGGTCTCCTGGTACCAGAGCCTGATCAAAGTTCTCCTAAGCCGCTTCCCCCAGAGCTGTCGCCATTTCCAAAGCCCAGACTTGGGAACTCAGTACCTGGTTGTGCTGAATCAGAAGTTCACTGACTGCTTTGTGCTAGTGTTTCTGGACTCCCACTTAGGAAAGACGTCTCTGACAGTGGTTTTCCGAGAGCCCTTCCCAGTACAGCCCCAGGACAGCGAGAGCCCCCCTGCCCAACTGGTCTCCACCTACCACCACCTGGAGTCTGTCATCAACACAGCCTGTTTCACCCTCTGGACCCGCCTCCTCTGA MSLPIGSAEVASERVELWRSGFRWWQRCLCFCRYRRVAMAAVDSDVESLPRGGFRCCLCHVTTANRPSLDAHLGGRKHRHLVELRAARKAQGLRSVFVSGFPRDVDSAQLSEYFLAFGPVASVVMDKDKVEEAGQVFLLMKKDYRISRNVRLAWFLSHLHQTVQATPQEMLLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSRCLGGLLRPFRVPGSCIDFQPEIYVTIQAYSSIIGLQSHQVLVQGCLLDPSQREVFLQQIYEQLCLFEDKVATMLQQQYDPQSQAEDQSPDSGDLLGRKVGVSMVTADLGLVSMIRQGILALQLLPSNSSAGIIVITDGVTSVPDVAVCETLLNQLRSGTVACSFVQVGGVYSYDCSFGHVPNVELMKFIAMATFGSYLSTCPEPEPGNLGLTVYHRAFLLYSFLRSGEALNPEYYCGSQHRLFNEHLVSASSNPALALRRKKHTEKEVPADLVSTVSVRLREGYSVREVTLAKGGSQLEVKLVLLWKHNMRIEYVAMAPWPLEPEGPRVTRVEVTMEGGYDILHDVSCALRQPIRSLYRTHVIRRFWNTLQSINQTDQMLAHLQSFSSVPEHFTLPDSTKSGVPLFYIPPGSTTPVLSLQPSGSDSSHAQFAAYWKPVLSMDANSWQRWLHMHRLVLILEHDTPIPKHLHTPGSNGRYSTIQCRISHSSLTSLLRDWSSFVLVEGYSYVKLLSSAPDQPPNSFYMVRIISKAPCMVLRLGFPIGTPAPARHKIVSGLREEILRLRFPHRVQSKEPTPKVKRKGLGGAGGGSSPSKSPPVLGPQQALSDRPCLVVLHKPLDKLLIRYEKLPLDYRAPFLLTLEPPGPLPLVSGRSASSSLASLSRYLYHQRWLWSVPSGLAPALPLSAIAQLLSILTEVRLSEGFHFACSGEGIINMVLELPIQNEPPGQAAAEEKHTCVVQYILFPPHSTSTKDSFSTDDDNDVEVEALEGDSELNLVTEVWVEPQYGRVGPGPGIWKHLQDLTYSEIPQALHPRDAACIGSMLSFEYLIQLCQSKEWGPLPPEPRVSDGLDQGGDTCVHEIPFHFDLMGLLPQCQQLQMFFLLLAREPEGVPFAEGSCPANDMVLCLLHSCLGQELSDREIPLTPVDQAAFLSEVLRRTCHVPGAEGPLLGVHGIPKEQAVGSTQATGDSAFTSLSVGLPETLKPLISAQPPQWRCYARLVNPQHVFLTFLPATFSDVQRLAACGLEGPPQEETKPKFGDWSGAPSLKDLGGTGIKATKSHVPVLSVTLASDNAQNQGELSPPFRRDLQAYAGRQASQTESADGPRTRCPVYIYSCSLEALREQMVGMQPPQAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEHAQRCYVRGLFRSLQQAQSVTSQDLLTAVDACEELLQEIDITPFLLALCGHTWGLPHAPPSPGPLSPGPFSSSMEEGAEPRERAILASESSIETEDLSEPEFQSTRVPGIPDPGPEISLTDVCQLRGEAHGALHSVIQEKFLEISRLHFRTVPSNPHYFFYCPPSSRREDEGPRDTVDRKISDLEFSEAELMGEEGDTSACCVVTESDPELEVEYRESRESDLGPAGLDSASLSDVDTVNPDEDSFSILGGDSPTGPESFLHDLPPLFLHLTCSVRLRGQHSSVPVCSLPTCLGQVLSSLEGPPVGGRVPLRDLSVTLDVFMLTLPLEVELPTASDPQHHRSTSESSASFPRSPGQPSSLRSDDGLGPPLPPPEEERHPGLSNLATPHRLAIETTMNEIRWLLEDEMVGALRRGGIPQSPALHRAAAHIHSSPGRSTCLRQTLPLSFVFGPERSLTQFKEEFRRLHLPGHVLLEDPDSGFFFVAAGQQPGGSHGEPSSAAWAWHSHEDRAEGIEGETLTASPQAPGSPEDSEGVPLISLPRVPQGGSQPGPSRGLSLMSSQGSVDSDHLGYDGGSSGSDSEGPNDTLGEKAPFTLRTPPGPAPPQPSLSGLPGPCLPDFWLIVRVLQDRVEVYAHARSLIREDGGPGTECRHLQQLLVRRVGEICREVNQRLLLQDLHDSHVCNSLLVAESEEDLWRSETPFHSRQRAPLPSDDYAADESCAPRGYLAATMQFVPGHFSCDVVWGTVIRVHSRLKMGPSMGVSRAIQALRSVLNAFSVVNRKNMFVYQERATKAVYYLRLLETSCSDRPWKGDALPPSLALSRSQEPIYSEEASGPRSPLDMVSSRSSDAARPVGQVDRHIQLLVHGVGQAGPEITDELVRVLCRRLDEATLDVITVMLVRNCKLTPADVEFIQPPGSLPSEVLHLALPTSCRPWLPALAWYLRQNLLIFLHSPKYTDSNSRNHFQHPLPPQGGLPDLDIYLYNKPGGQGTGGKGVACITLAFVDEGGAPLSLALWPPSSPGPPDPLREEEFEQLTQVIRCPVVVDSSSAQNGAPRLRLDVWEKGNISIVQLEEKLRGAARQALADAIIELQLLPASLCTEDTPTGSLRNGSLETKSSAGRASTFPPAPVPGEPVTPPSKAGRRSFWDMLSKTECGDLGSPKTTDDIVLDRPEDTRGRRRHKTESVRTPGGAERAPGSDSGAQRQKRRTTQLEEGEVGTLHPVFARVAQRWMEFMVQIGCASVSRSSAHMVSRFLLPSILSEFTALVTSMAGDTSVRIFEQHLGSEPEIFGPCSPGQLGPSPRPAAERHLLLLGRNFLQWRRPTQQAAKAMQRFEPGGDGSSGRNAPRQRLLLLEVVDKKLQLLTYNWAPDLGAALGRALVRLVQWQNARAHLIFCLLSQKLGLFHHYGQLDFPVRDEKEPNPFLLPTMEVETLIRSASPPLSREQGRLSGSSRGGGPLPLDTFPFDEALRDITAARPSSVLGPVPRPPDPVTYHGQQFLEIKMAERRELERQMKMENLFVTWQQRSTPATMPISAGELETLKQSSRLVHYCATAMLFDPAAWLHGPPETSGPPDGQRRHRPESGSGSREAPTSCESLDVSPPGAREEPWLKELSLAFLQQYVQYLQSIGFVLVPLRPPSPARSTSRPRAMAILGTEGRGSFSCPKTKTDGSPKSTSSPVTTYHLQRALPGGIILMELAFQGCYFCVKQFALECSRIPMGQAVNSQLSMLFTEECDKVRDLMHVHSFSYDFHLRLVHQHVLGAHLVLRHGYHLTTFLRHFLAHHPDGPHFGRNHIYQGTLELPTPLIAAHQLYNYVADHASSYHMKPLRMARPGGPEHNEYALVSAWHSSGSYLDSEGLRHQDDFDVSLLVCHCAAPFEEQGEAERHVLRLQFFVVLTSQRELFPRLTADMRRFRKPPRLPPEPEAPGSSAGSPGEASGLILAPGPAPLFPPLAAEVGMARARLAQLVRLAGGHCRRDTLWKRLFLLEPPGPDRLRLGGRLALAELEELLEAVHAKSIGDIDPQLDCFLSMTVSWYQSLIKVLLSRFPQSCRHFQSPDLGTQYLVVLNQKFTDCFVLVFLDSHLGKTSLTVVFREPFPVQPQDSESPPAQLVSTYHHLESVINTACFTLWTRLL* FALSE FALSE NA NA TRUE hsa-mir-6735 chr1:43448539-43448611:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31699 KMT5B::CATSPER1 ENSG00000110066.16::ENSG00000175294.6 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KMT5B ENSG00000110066.16 protein_coding - - chr11:68154863-68213852:- chr11:68189917:- chr11:67922330-67981319:- chr11:67957384:- CATSPER1 ENSG00000175294.6 protein_coding - - chr11:66016752-66026479:- chr11:66018902:- chr11:65784223-65793950:- chr11:65786373:- chr11:68185866,chr11:68185869 chr11:66019901,chr11:66019901 NA NA chr11:67953333,chr11:67953336 chr11:65787372,chr11:65787372 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["CCLE_StarF2019"] 24 25 24 23.12 ONLY_REF_SPLICE YES_LDAS 0.5748 GT 1.8323 AG 1.7819 ENST00000700520.1 1-160 ENST00000312106.6 2126-2343 chr11|-|[0]68189917-68190076[0]<==>chr11|-|[2]66016890-66016916[0]|[2]66017060-66017174[2]|[1]66018827-66018902[1] atgaagtggttgggagaatccaagaacatggtggtgaatggcaggagaaatggaggcaagttgtctaatgaccatcagcagaatcaatcaaaattacagcacacggggaaggacaccctgaaggctggcaaaaatgcagtcgagaggaggtcgaacagatAGCCCAAAGAGGTGGCGAGTGAAGGCACCATGCTGAAGCGGCTCATCGAGAAAAAGTTTGGGACCATGACTGAGAAGCAGCAGGAGCTCCTGTTCCATTACCTGCAGCTGGTGGCAAGCGTGGAGCAGGAGCAGCAGAAGTTCCGCTCCCAGGCAGCCGTCATCGATGAGATTGTGGACACCACATTTGAGGCTGGAGAAGAGGACTTCAGGAATTGA MKWLGESKNMVVNGRRNGGKLSNDHQQNQSKLQHTGKDTLKAGKNAVERRSNR*PKEVASEGTMLKRLIEKKFGTMTEKQQELLFHYLQLVASVEQEQQKFRSQAAVIDEIVDTTFEAGEEDFRN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31702 FBRSL1::COL9A2 ENSG00000112787.14::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1645 FALSE NA FALSE NA FBRSL1 ENSG00000112787.14 protein_coding + + chr12:132489551-132585188:+ chr12:132490861:+ chr12:133066137-133161774:+ chr12:133067447:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40306187:- chr1:40766161-40783485:- chr1:40771859:- chr12:132506904,chr12:132506904,chr12:132506904,chr12:132506904 chr1:40306762,chr1:40306771,chr1:40306790,chr1:40306786 NA NA chr12:133083490,chr12:133083490,chr12:133083490,chr12:133083490 chr1:40772434,chr1:40772443,chr1:40772462,chr1:40772458 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Auts2-PARTIAL|266-291~|2 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr1] 15 2 15 2 ONLY_REF_SPLICE YES_LDAS 0.2074 GT 1.7968 AG 1.7968 ENST00000434748.2 1-291 ENST00000372748.8 1009-2070 chr12|+|[0]132490571-132490861[2]<==>chr1|-|[2]40301182-40301381[1]|[0]40301812-40301889[1]|[0]40302621-40302809[1]|[0]40303131-40303185[0]|[2]40303530-40303676[0]|[2]40303807-40303839[0]|[2]40303928-40303972[0]|[2]40304064-40304099[0]|[2]40304320-40304391[0]|[2]40304476-40304529[0]|[2]40304794-40304847[0]|[2]40305715-40305768[0]|[2]40306143-40306187[0] atggaggccaaggtccgcccgagccggcgctcgcgcgcgcagcgggaccgtggccggcgccgggaggccgcccgcgacgcccgcgcccagagtccgtcgtcgggcgacgagcccgagcccagccccggcaaggagaacgcgggcctccgcggcgcgcccccccgaggcgccgcccccgcgccccgcaccgcgcgtcccccgcgccgccgccgccgcgagtccagctcgcaggaggaggaggtcatcgacggcttcgccatcgccagcttcagcaccctggaggccctggagGGTGTGCCAGGCCAGCCTGGGACAAAAGGAGGCCCTGGAGACCAGGGTGAGCCGGGCCCGCAGGGCCTTCCTGGATTCTCTGGTCCCCCTGGGAAAGAGGGAGAGCCAGGGCCTCGAGGAGAAATTGGTCCCCAGGGCATCATGGGACAGAAGGGTGACCAAGGCGAGAGGGGTCCAGTGGGGCAACCAGGCCCTCAGGGAAGGCAGGGCCCTAAGGGGGAGCAGGGCCCCCCCGGAATTCCAGGGCCCCAAGGCTTGCCAGGCGTCAAAGGAGACAAGGGCTCCCCAGGGAAGACCGGGCCCCGCGGCAAAGTGGGTGACCCAGGGGTGGCCGGCCTCCCCGGAGAGAAAGGCGAGAAGGGCGAGTCCGGCGAGCCGGGGCCCAAGGGACAGCAAGGAGTACGTGGAGAACCCGGCTACCCTGGCCCCAGCGGGGATGCGGGCGCCCCAGGGGTTCAGGGCTACCCTGGTCCCCCCGGCCCTCGAGGACTGGCCGGGAACCGAGGCGTGCCAGGACAGCCCGGGAGACAGGGCGTGGAGGGCCGGGATGCCACTGACCAGCACATCGTGGATGTGGCGCTGAAGATGCTGCAAGAGCAACTGGCAGAGGTCGCCGTGAGTGCCAAGCGGGAAGCCCTGGGTGCGGTGGGCATGATGGGTCCTCCAGGACCTCCTGGGCCCCCTGGGTACCCAGGCAAGCAGGGCCCCCATGGGCACCCTGGCCCTCGGGGCGTTCCTGGCATCGTGGGAGCCGTGGGTCAGATCGGCAACACGGGGCCCAAGGGAAAACGTGGAGAGAAGGGTGATCCAGGAGAAGTGGGACGGGGGCACCCCGGGATGCCTGGGCCCCCAGGGATCCCAGGACTCCCTGGCCGGCCTGGCCAGGCAATCAACGGCAAGGATGGAGATCGAGGGTCCCCAGGGGCTCCAGGAGAGGCAGGTCGACCTGGCCTGCCAGGCCCCGTGGGGCTGCCGGGCTTCTGTGAACCTGCCGCCTGCCTTGGAGCTTCGGCCTATGCCTCTGCCCGCCTTACAGAGCCTGGATCCATCAAGGGGCCTTGA MEAKVRPSRRSRAQRDRGRRREAARDARAQSPSSGDEPEPSPGKENAGLRGAPPRGAAPAPRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRGVPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31707 EBF4::PDYN-AS1 ENSG00000088881.22::ENSG00000233896.2 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EBF4 ENSG00000088881.22 protein_coding + + chr20:2692780-2760108:+ chr20:2693782:+ chr20:2673426-2740754:+ chr20:2674428:+ PDYN-AS1 ENSG00000233896.2 lncRNA + + chr20:1947246-2030028:+ chr20:2026512:+ chr20:1927892-2010674:+ chr20:2007158:+ chr20:2703463,chr20:2703464 chr20:2010151,chr20:2010156 NA NA chr20:2684109,chr20:2684110 chr20:1990797,chr20:1990802 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 4 12 3.43 INCL_NON_REF_SPLICE YES_LDAS 0.1882 GT 1.5219 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31711 PPT1::EP400 ENSG00000131238.18::ENSG00000183495.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1648 FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132053146:+ chr12:132434487-132565005:+ chr12:132537691:+ chr1:40080699 chr12:132051768 NA NA chr1:40546371 chr12:132536313 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Palm_thioest|34-318|7.3e-87 none ["EP400:Oncogene"];["CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr12] 9 6 9 6 ONLY_REF_SPLICE YES_LDAS 0.183 GT 1.9329 AG 1.8892 ENST00000641471.1 1-623 ENST00000389561.7 7395-9372 chr1|-|[1]40089410-40089512[1]|[0]40091329-40091399[2]|[1]40092045-40092172[0]|[2]40092398-40092507[1]|[0]40093933-40094019[1]|[0]40097115-40097238[0]<==>chr12|+|[2]132053146-132053224[2]|[0]132053343-132053597[2]|[0]132054974-132055019[0]|[1]132055099-132055208[2]|[0]132062110-132062323[0]|[1]132062466-132062701[2]|[0]132064668-132064886[2]|[0]132066774-132066969[0]|[1]132067362-132067486[2]|[0]132069495-132069641[2]|[0]132076516-132076593[2]|[0]132077401-132077673[2] atggcgtcgcccggctgcctgtggctcttggctgtggctctcctgccatggacctgcgcttctcgggcgctgcagcatctggacccgccggcgccgctgccgttggtgatctggcatgggatggggtctcgttatgttgcccaaactggtctcgaactcttggcctcaagcaatcctcctgcctcgtcttaccaaagcgctgggatgataggagacagctgttgcaatcccttaagcatgggtgctattaaaaaaatggtggagaagaaaatacctggaatttacgtcttatctttagagattgggaagaccctgatggaggacgtggagaacagcttcttcttgaatgtcaattcccaagtaacaacagtgtgtcaggcacttgctaaggatcctaaattgcagcaaggctacaatgctatgggattctcccagggaggccaatttctgagggcagtggctcagagatgcccttcacctcccatgatcaatctgatctcggttgggggacaacatcaaggtgtttttggactccctcgatgcccaggagagagctctcacatctgtgacttcatccgaaaaacactgaatgctggggcgtactccaaagttgttcaggaacgTGGAATCAACTATGACAAGCCGCTGCCTCCCATCCAGGTGGCATCTCTCCGTGCAGAGCGAATCGCAAAAGAGAAAAAGGCTCTGGCTGATCAGCAGAAGGCACAGCAGCCGGCCGTGGCCCAGCCACCCCCGCCCCAGCCGCAGCCCCCACCACCCCCGCAGCAGCCACCGCCACCGCTGCCACAACCACAGGCAGCGGGCAGCCAGCCGCCAGCAGGGCCACCAGCTGTCCAGCCCCAACCCCAGCCACAGCCCCAGACCCAGCCACAGCCTGTGCAGGCCCCAGCGAAGGCGCAGCCCGCAATCACGACGGGGGGCAGTGCAGCCGTACTGGCAGGAACCATTAAAACATCAGTTACTGGGACGAGCATGCCCACTGGTGCCGTGAGTGGAAATGTGATCGTGAACACCATCGCAGGGGTCCCAGCTGCCACCTTCCAGTCCATCAACAAGCGCCTGGCGTCGCCAGTGGCTCCTGGGGCCTTGACTACGCCGGGAGGCTCTGCTCCCGCCCAGGTGGTGCACACCCAGCCCCCGCCACGGGCAGTCGGCTCCCCAGCCACGGCGACCCCTGACCTGGTGTCCATGGCAACGACTCAGGGTGTTCGAGCGGTCACTTCTGTGACAGCCTCGGCCGTGGTCACTACCAACCTGACCCCAGTGCAGACCCCGGCACGGTCTTTGGTGCCCCAAGTGTCCCAAGCCACAGGAGTTCAGCTCCCTGGAAAAACCATCACACCTGCACATTTCCAGCTTCTCAGGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGACGACGACGACCTCTCAGGTGCAAGTTCCACAGATCCAGGGCCAGGCCCAGTCCCCAGCACAGATCAAAGCTGTGGGCAAGCTGACGCCGGAACACCTCATCAAAATGCAGAAGCAGAAACTGCAGATGCCCCCGCAGCCCCCACCGCCACAGGCCCAGTCTGCGCCCCCGCAGCCAACAGCCCAAGTGCAAGTGCAGACCTCGCAGCCGCCGCAGCAGCAGAGCCCCCAGCTCACGACGGTCACGGCCCCAAGGCCTGGTGCCCTGCTGACGGGCACCACCGTGGCCAACCTCCAGGTGGCCCGGCTCACCCGGGTTCCCACTTCTCAGCTGCAGGCGCAAGGGCAGATGCAGACCCAGGCACCCCAGCCAGCCCAGGTGGCCTTGGCGAAGCCTCCGGTGGTGTCCGTCCCGGCAGCTGTGGTCTCCTCACCGGGAGTCACCACCCTGCCCATGAACGTCGCGGGGATCAGCGTGGCGATCGGTCAGCCACAGAAGGCAGCAGGACAGACCGTGGTGGCCCAGCCCGTGCACATGCAGCAGCTGCTGAAGCTGAAGCAGCAGGCCGTCCAGCAGCAGAAGGCCATCCAGCCCCAGGCTGCACAGGGCCCGGCAGCCGTCCAGCAGAAGATCACCGCACAGCAGATCACCACCCCTGGCGCGCAGCAGAAGGTTGCCTACGCCGCGCAGCCGGCCCTTAAGACCCAGTTTCTTACCACACCCATCTCCCAGGCCCAGAAACTGGCCGGGGCCCAGCAAGTGCAGACCCAGATCCAGGTTGCAAAACTTCCTCAAGTTGTTCAACAGCAAACACCCGTGGCCAGCATCCAGCAAGTTGCCTCTGCTTCCCAGCAGGCTTCTCCACAGACTGTGGCGCTCACGCAGGCGACGGCGGCCGGGCAGCAGGTGCAGATGATCCCTGCAGTGACCGCGACTGCCCAGGTGGTTCAGCAGAAACTCATTCAGCAGCAGGTGGTGACCACGGCGTCGGCCCCGCTCCAGACTCCAGGCGCTCCCAACCCAGCCCAGGTGCCCGCCAGCTCCGACAGCCCAAGCCAGCAGCCCAAGTTACAGATGAGGGTCCCTGCTGTCAGGCTAAAGACACCTACTAAGCCTCCGTGCCAGTAG MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGSRYVAQTGLELLASSNPPASSYQSAGMIGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTPGGSAPAQVVHTQPPPRAVGSPATATPDLVSMATTQGVRAVTSVTASAVVTTNLTPVQTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQAQSAPPQPTAQVQVQTSQPPQQQSPQLTTVTAPRPGALLTGTTVANLQVARLTRVPTSQLQAQGQMQTQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQKAAGQTVVAQPVHMQQLLKLKQQAVQQQKAIQPQAAQGPAAVQQKITAQQITTPGAQQKVAYAAQPALKTQFLTTPISQAQKLAGAQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVALTQATAAGQQVQMIPAVTATAQVVQQKLIQQQVVTTASAPLQTPGAPNPAQVPASSDSPSQQPKLQMRVPAVRLKTPTKPPCQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31712 ENSG00000291171::COL9A2 ENSG00000291171.1::ENSG00000049089.15 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1643 FALSE NA FALSE NA ENSG00000291171 ENSG00000291171.1 lncRNA + + chr12:132084275-132131639:+ chr12:132090943:+ chr12:132568820-132616184:+ chr12:132575488:+ COL9A2 ENSG00000049089.15 protein_coding - - chr1:40300489-40317813:- chr1:40301889:- chr1:40766161-40783485:- chr1:40767561:- chr12:132094544,chr12:132094543 chr1:40302205,chr1:40302206 NA NA chr12:132579089,chr12:132579088 chr1:40767877,chr1:40767878 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 13 9 8.59 ONLY_REF_SPLICE YES_LDAS 0.2146 GT 1.8892 AG 1.5628 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31722 TRIT1::PPT1 ENSG00000043514.17::ENSG00000131238.18 HCC33 SRR8615900 SRR8639158 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40092507:- chr1:40538382-40562932:- chr1:40558179:- chr1:39841497,chr1:39841501 chr1:40097477,chr1:40097478 NA NA chr1:40307169,chr1:40307173 chr1:40563149,chr1:40563150 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 Palm_thioest-PARTIAL|~103-258|1.7e-81^Glyco_hydro_98M|174-246|2.6e-05 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.19Mb] 5 8 5 8 ONLY_REF_SPLICE YES_LDAS 0.1586 GT 1.9656 AG 1.9656 ENST00000441669.6 1-174 ENST00000641083.1 103-971 chr1|-|[2]39883318-39883491[0]<==>chr1|-|[2]40074101-40074183[1]|[0]40076730-40076913[0]|[2]40078560-40078658[0]|[2]40080397-40080487[2]|[1]40089410-40089512[1]|[0]40091329-40091399[2]|[1]40092045-40092172[0]|[2]40092398-40092507[1] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagGAGACAGCTGTTGCAATCCCTTAAGCATGGGTGCTATTAAAAAAATGGTGGAGAAGAAAATACCTGGAATTTACGTCTTATCTTTAGAGATTGGGAAGACCCTGATGGAGGACGTGGAGAACAGCTTCTTCTTGAATGTCAATTCCCAAGTAACAACAGTGTGTCAGGCACTTGCTAAGGATCCTAAATTGCAGCAAGGCTACAATGCTATGGGATTCTCCCAGGGAGGCCAATTTCTGAGGGCAGTGGCTCAGAGATGCCCTTCACCTCCCATGATCAATCTGATCTCGGTTGGGGGACAACATCAAGGTGTTTTTGGACTCCCTCGATGCCCAGGAGAGAGCTCTCACATCTGTGACTTCATCCGAAAAACACTGAATGCTGGGGCGTACTCCAAAGTTGTTCAGGAACGCCTCGTGCAAGCCGAATACTGGCATGACCCCATAAAGGAGGATGTGTATCGCAACCACAGCATCTTCTTGGCAGATATAAATCAGGAGCGGGGTATCAATGAGTCCTACAAGAAAAACCTGATGGCCCTGAAGAAGTTTGTGATGGTGAAATTCCTCAATGATTCCATTGTGGACCCTGTAGATTCGGAGTGGTTTGGATTTTACAGAAGTGGCCAAGCCAAGGAAACCATTCCCTTACAGGAGACCTCCCTGTACACACAGGTAACTGGCAGGGAGTCTATCTTGGGAGGTTGGTGTTTTTTCAGCTCCCAGTTCCTGAAGCTGCTATGTTCTTTGGTGCTGGAGCCCTTTCCTTTACACCTCAGAGCACTAGGACCGCCTGGGGCTAAAGGAAATGGACAATGCAGGACAGCTAGTGTTTCTGGCTACAGAAGGGGACCATCTTCAGTTGTCTGA MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQETAVAIP*AWVLLKKWWRRKYLEFTSYL*RLGRP*WRTWRTASS*MSIPK*QQCVRHLLRILNCSKATMLWDSPREANF*GQWLRDALHLP*SI*SRLGDNIKVFLDSLDAQERALTSVTSSEKH*MLGRTPKLFRNASCKPNTGMTP*RRMCIATTASSWQI*IRSGVSMSPTRKT*WP*RSL*W*NSSMIPLWTL*IRSGLDFTEVAKPRKPFPYRRPPCTHR*LAGSLSWEVGVFSAPSS*SCYVLWCWSPFLYTSEH*DRLGLKEMDNAGQLVFLATEGDHLQLS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31727 RERE::SLC2A5 ENSG00000142599.20::ENSG00000142583.18 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1649 FALSE NA FALSE NA RERE ENSG00000142599.20 protein_coding - - chr1:8352397-8848921:- chr1:8614561:- chr1:8412457-8908980:- chr1:8674620:- SLC2A5 ENSG00000142583.18 protein_coding - - chr1:9035106-9088478:- chr1:9058250:- chr1:9095165-9148537:- chr1:9118309:- chr1:8614197,chr1:8614199 chr1:9066408,chr1:9066407 NA NA chr1:8674256,chr1:8674258 chr1:9126467,chr1:9126466 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Atrophin-1|4-36|0.0059^BAH|104-281|7.7e-17^ELM2|286-336|9.6e-15^Myb_DNA-binding|394-439|9.4e-09^Myb_DNA-bind_7|394-431|8.5e-06^GATA-PARTIAL|507-522~|1.2e-14 Sugar_tr-PARTIAL|~34-475|2.3e-149^MFS_1|72-393|5.5e-24^MFS_1|306-473|1.1e-09 ["RERE:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.22Mb] 224 179 224 179 ONLY_REF_SPLICE YES_LDAS 4.7865 GT 1.7232 AG 1.8892 ENST00000400908.7 1-522 ENST00000377424.9 34-1506 chr1|-|[2]8614561-8614686[0]|[2]8624310-8624380[1]|[0]8655973-8656297[0]<==>chr1|-|[2]9037586-9037789[0]|[2]9037897-9038024[1]|[0]9038431-9038506[0]|[2]9038828-9038929[0]|[2]9039552-9039662[0]|[2]9039800-9039987[1]|[0]9040064-9040189[1]|[0]9041785-9041937[1]|[0]9047610-9047734[2]|[1]9057448-9057608[0]|[2]9058152-9058250[0] atgacagcggacaaagacaaagacaaagacaaagagaaggaccgggaccgagaccgggaccgagagagagagaaaagagacaaagcaagagagagtgagaattcaaggccacgccggagctgtaccttggaaggaggagccaaaaattatgctgagagtgatcacagtgaagacgaggacaatgacaacaatagtgccaccgcagaggagtccacgaagaagaataagaagaaaccaccgaaaaaaaagtctcgttatgaaaggacagataccggtgagataacatcctacatcactgaagatgatgtggtctacagaccaggagactgtgtgtatatcgagagtcggaggccaaacacaccgtatttcatctgtagcattcaagacttcaaactggtccacaactcccaggcctgttgcagatctccaactcctgctttgtgtgaccccccagcatgctctctgccggtggcatcacagccaccacagcatctttctgaagccgggagagggcctgtagggAGGCTGACGCTTGTGCTTGCCCTGGCAACCCTGATAGCTGCCTTTGGGTCATCCTTCCAGTATGGGTACAACGTGGCTGCTGTCAACTCCCCAGCACTGCTCATGCAACAATTTTACAATGAGACTTACTATGGTAGGACCGGTGAATTCATGGAAGACTTCCCCTTGACGTTGCTGTGGTCTGTAACCGTGTCCATGTTTCCATTTGGAGGGTTTATCGGATCCCTCCTGGTCGGCCCCTTGGTGAATAAATTTGGCAGAAAAGGGGCCTTGCTGTTCAACAACATATTTTCTATCGTGCCTGCGATCTTAATGGGATGCAGCAGAGTCGCCACATCATTTGAGCTTATCATTATTTCCAGACTTTTGGTGGGAATATGTGCAGGTGTATCTTCCAACGTGGTCCCCATGTACTTAGGGGAGCTGGCCCCTAAAAACCTGCGGGGGGCTCTCGGGGTGGTGCCCCAGCTCTTCATCACTGTTGGCATCCTTGTGGCCCAGATCTTTGGTCTTCGGAATCTCCTTGCAAACGTAGATGGCTGGCCGATCCTGCTGGGGCTGACCGGGGTCCCCGCGGCGCTGCAGCTCCTTCTGCTGCCCTTCTTCCCCGAGAGCCCCAGGTACCTGCTGATTCAGAAGAAAGACGAAGCGGCCGCCAAGAAAGCCCTACAGACGCTGCGCGGCTGGGACTCTGTGGACAGGGAGGTGGCCGAGATCCGGCAGGAGGATGAGGCAGAGAAGGCCGCGGGCTTCATCTCCGTGCTGAAGCTGTTCCGGATGCGCTCGCTGCGCTGGCAGCTGCTGTCCATCATCGTCCTCATGGGCGGCCAGCAGCTGTCGGGCGTCAACGCTATCTACTACTACGCGGACCAGATCTACCTGAGCGCCGGCGTGCCGGAGGAGCACGTGCAGTACGTGACGGCCGGCACCGGGGCCGTGAACGTGGTCATGACCTTCTGCGCCGTGTTCGTGGTGGAGCTCCTGGGTCGGAGGCTGCTGCTGCTGCTGGGCTTCTCCATCTGCCTCATAGCCTGCTGCGTGCTCACTGCAGCTCTGGCACTGCAGGACACAGTGTCCTGGATGCCATACATCAGCATCGTCTGTGTCATCTCCTACGTCATAGGACATGCCCTCGGGCCCAGTCCCATACCCGCGCTGCTCATCACTGAGATCTTCCTGCAGTCCTCTCGGCCATCTGCCTTCATGGTGGGGGGCAGTGTGCACTGGCTCTCCAACTTCACCGTGGGCTTGATCTTCCCGTTCATCCAGGAGGGCCTCGGCCCGTACAGCTTCATTGTCTTCGCCGTGATCTGCCTCCTCACCACCATCTACATCTTCTTGATTGTCCCGGAGACCAAGGCCAAGACGTTCATAGAGATCAACCAGATTTTCACCAAGATGAATAAGGTGTCTGAAGTGTACCCGGAAAAGGAGGAACTGAAAGAGCTTCCACCTGTCACTTCGGAACAGTGA MTADKDKDKDKEKDRDRDRDREREKRDKARESENSRPRRSCTLEGGAKNYAESDHSEDEDNDNNSATAEESTKKNKKKPPKKKSRYERTDTGEITSYITEDDVVYRPGDCVYIESRRPNTPYFICSIQDFKLVHNSQACCRSPTPALCDPPACSLPVASQPPQHLSEAGRGPVGRLTLVLALATLIAAFGSSFQYGYNVAAVNSPALLMQQFYNETYYGRTGEFMEDFPLTLLWSVTVSMFPFGGFIGSLLVGPLVNKFGRKGALLFNNIFSIVPAILMGCSRVATSFELIIISRLLVGICAGVSSNVVPMYLGELAPKNLRGALGVVPQLFITVGILVAQIFGLRNLLANVDGWPILLGLTGVPAALQLLLLPFFPESPRYLLIQKKDEAAAKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLSIIVLMGGQQLSGVNAIYYYADQIYLSAGVPEEHVQYVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFSICLIACCVLTAALALQDTVSWMPYISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHWLSNFTVGLIFPFIQEGLGPYSFIVFAVICLLTTIYIFLIVPETKAKTFIEINQIFTKMNKVSEVYPEKEELKELPPVTSEQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Liver hepatocellular carcinoma LUNG,UTERUS,LIVER exact 8877219,8555123|8555123,8877219 FALSE,FALSE|FALSE,FALSE 9129653,9118309|9129653,9107793 FALSE,TRUE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-5UTR,In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31732 MTF1::ZC3H12A-DT ENSG00000188786.10::ENSG00000233621.3 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTF1 ENSG00000188786.10 protein_coding - - chr1:37809574-37859592:- chr1:37857251:- chr1:38275246-38325264:- chr1:38322923:- ZC3H12A-DT ENSG00000233621.3 lncRNA - - chr1:37350934-37474432:- chr1:37352557:- chr1:37816535-37940033:- chr1:37818158:- chr1:37847930,chr1:37847930,chr1:37847932,chr1:37847932 chr1:37355900,chr1:37355897,chr1:37355899,chr1:37355897 NA NA chr1:38313602,chr1:38313602,chr1:38313604,chr1:38313604 chr1:37821501,chr1:37821498,chr1:37821500,chr1:37821498 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 50 32 50 32 ONLY_REF_SPLICE YES_LDAS 0.974 GT 1.4256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31735 PRKRIP1::CUX1 ENSG00000128563.13::ENSG00000257923.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1652 TRUE 2971 TRUE 1130 PRKRIP1 ENSG00000128563.13 protein_coding + + chr7:102363872-102426676:+ chr7:102397698:+ chr7:102004319-102067123:+ chr7:102038145:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102234052:+ chr7:101459184-101927250:+ chr7:101877332:+ chr7:102398313,chr7:102398310 chr7:102230915,chr7:102230909 NA NA chr7:102038760,chr7:102038757 chr7:101874195,chr7:101874189 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Vfa1|30-32|2.8^DUF1168|42-174|1.9e-49^Vfa1|83-173|7.1e-05^Peptidase_C58|90-165|8.2e-05^AP1AR|96-162|0.00063 none ["CUX1:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.08Mb];LOCAL_REARRANGEMENT:+:[79915] 35 40 35 36.24 ONLY_REF_SPLICE YES_LDAS 0.8461 GT 1.9656 AG 1.9329 ENST00000397912.3 1-205 ENST00000292535.12 3434-4518 chr7|+|[0]102396412-102396537[2]|[0]102397620-102397698[0]<==>chr7|+|[1]102234052-102234240[0]|[1]102239320-102239584[1]|[2]102248412-102249042[2] atggctagcccagccgcctcctcggtgcgaccaccgaggcccaagaaagagccgcagacgctcgtcatccccaagaatgcggcggaggagcagaagctcaagctggagcggctcatgaagaacccggacaaagcagttccaattccagagaaaatgagtgaatgggcacctcgacctcccccagaatttgtccgagatgtcatggGCCAGCGCTTATTTGGGGAGACCATCTTAGGGCTCACCCAAGGCTCTGTCTCTGACCTCCTTGCCCGCCCCAAACCCTGGCATAAGCTCAGTCTGAAAGGACGAGAGCCCTTCGTCCGGATGCAGCTGTGGCTGAACGACCCCAACAATGTGGAGAAGCTGATGGACATGAAACGGATGGAGAAGAAAGCCTACATGAAGCGGCGGCACAGCTCAGTCAGTGACAGCCAGCCCTGCGAACCGCCCTCTGTCGGCACCGAGTACAGCCAGGGCGCCAGCCCCCAGCCCCAGCACCAGCTGAAGAAACCCCGGGTGGTGCTGGCTCCGGAGGAGAAGGAGGCGCTGAAACGAGCGTATCAGCAAAAGCCATACCCGTCACCAAAAACCATCGAAGACCTCGCCACCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGGATCCGCAGAGAACTGTTCATTGAGGAAATTCAGGCCGGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCGCAGCGGCCGGGCGGCGCCCAGCTCGGAGGGCGACAGCTGCGACGGCGTGGAGGCCACTGAGGGCCCAGGCAGCGCCGACACCGAGGAGCCCAAGTCTCAGGGAGAGGCCGAGCGGGAGGAGGTGCCGCGGCCGGCGGAGCAGACGGAGCCGCCGCCCTCGGGGACCCCGGGCCCGGACGACGCCCGCGACGACGACCACGAGGGAGGCCCCGTGGAAGGCCCGGGGCCCCTGCCCAGCCCCGCCTCCGCGACCGCCACCGCCGCGCCCGCGGCCCCCGAGGACGCCGCTACCTCAGCCGCCGCCGCGCCGGGGGAGGGCCCCGCGGCCCCGAGCTCCGCGCCGCCGCCCAGCAACAGCAGCAGCAGCAGCGCCCCCCGCAGGCCCAGCTCGCTGCAGAGCCTTTTCGGCCTCCCCGAGGCCGCGGGCGCCCGGGACTCGCGCGACAACCCCCTGCGCAAGAAGAAGGCCGCGAACTTGAACAGCATCATCCACCGCCTGGAGAAGGCCGCCAGCCGGGAGGAACCTATCGAATGGGAGTTCTGA MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMDMKRMEKKAYMKRRHSSVSDSQPCEPPSVGTEYSQGASPQPQHQLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEDLATQLNLKTSTVINWFHNYRSRIRRELFIEEIQAGSQGQAGASDSPSARSGRAAPSSEGDSCDGVEATEGPGSADTEEPKSQGEAEREEVPRPAEQTEPPPSGTPGPDDARDDDHEGGPVEGPGPLPSPASATATAAPAAPEDAATSAAAAPGEGPAAPSSAPPPSNSSSSSAPRRPSSLQSLFGLPEAAGARDSRDNPLRKKKAANLNSIIHRLEKAASREEPIEWEF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 31736 LINC03051::LSAMP ENSG00000239268.5::ENSG00000185565.13 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA LINC03051 ENSG00000239268.5 lncRNA - - chr3:117672154-117997592:- chr3:117997182:- chr3:117391001-117716439:- chr3:117716029:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:116444955:- chr3:115521221-116858236:- chr3:116163802:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 7 19 7 ONLY_REF_SPLICE YES_LDAS 0.3088 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31747 PRKRIP1::CUX1 ENSG00000128563.13::ENSG00000257923.12 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1653 TRUE 2971 TRUE 1130 PRKRIP1 ENSG00000128563.13 protein_coding + + chr7:102363872-102426676:+ chr7:102396537:+ chr7:102004319-102067123:+ chr7:102036984:+ CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:102234052:+ chr7:101459184-101927250:+ chr7:101877332:+ chr7:102398313,chr7:102398310 chr7:102230915,chr7:102230909 NA NA chr7:102038760,chr7:102038757 chr7:101874195,chr7:101874189 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Vfa1|30-32|2.8^DUF1168-PARTIAL|42-126~|1.9e-49^Vfa1-PARTIAL|83-126~|7.1e-05^Peptidase_C58-PARTIAL|90-126~|8.2e-05^AP1AR-PARTIAL|96-126~|0.00063 none ["CUX1:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.08Mb];LOCAL_REARRANGEMENT:+:[79915] 8 24 8 3.18 ONLY_REF_SPLICE YES_LDAS 0.1328 GT 1.9086 AG 1.9329 ENST00000397912.3 1-126 ENST00000292535.12 3434-4518 chr7|+|[0]102396412-102396537[2]<==>chr7|+|[1]102234052-102234240[0]|[1]102239320-102239584[1]|[2]102248412-102249042[2] atggctagcccagccgcctcctcggtgcgaccaccgaggcccaagaaagagccgcagacgctcgtcatccccaagaatgcggcggaggagcagaagctcaagctggagcggctcatgaagaacccgGCCAGCGCTTATTTGGGGAGACCATCTTAGGGCTCACCCAAGGCTCTGTCTCTGACCTCCTTGCCCGCCCCAAACCCTGGCATAAGCTCAGTCTGAAAGGACGAGAGCCCTTCGTCCGGATGCAGCTGTGGCTGAACGACCCCAACAATGTGGAGAAGCTGATGGACATGAAACGGATGGAGAAGAAAGCCTACATGAAGCGGCGGCACAGCTCAGTCAGTGACAGCCAGCCCTGCGAACCGCCCTCTGTCGGCACCGAGTACAGCCAGGGCGCCAGCCCCCAGCCCCAGCACCAGCTGAAGAAACCCCGGGTGGTGCTGGCTCCGGAGGAGAAGGAGGCGCTGAAACGAGCGTATCAGCAAAAGCCATACCCGTCACCAAAAACCATCGAAGACCTCGCCACCCAGCTCAACCTGAAAACCAGCACCGTCATCAACTGGTTCCACAACTACAGGTCTCGGATCCGCAGAGAACTGTTCATTGAGGAAATTCAGGCCGGGAGTCAGGGCCAGGCGGGCGCCAGCGACTCACCCTCGGCCCGCAGCGGCCGGGCGGCGCCCAGCTCGGAGGGCGACAGCTGCGACGGCGTGGAGGCCACTGAGGGCCCAGGCAGCGCCGACACCGAGGAGCCCAAGTCTCAGGGAGAGGCCGAGCGGGAGGAGGTGCCGCGGCCGGCGGAGCAGACGGAGCCGCCGCCCTCGGGGACCCCGGGCCCGGACGACGCCCGCGACGACGACCACGAGGGAGGCCCCGTGGAAGGCCCGGGGCCCCTGCCCAGCCCCGCCTCCGCGACCGCCACCGCCGCGCCCGCGGCCCCCGAGGACGCCGCTACCTCAGCCGCCGCCGCGCCGGGGGAGGGCCCCGCGGCCCCGAGCTCCGCGCCGCCGCCCAGCAACAGCAGCAGCAGCAGCGCCCCCCGCAGGCCCAGCTCGCTGCAGAGCCTTTTCGGCCTCCCCGAGGCCGCGGGCGCCCGGGACTCGCGCGACAACCCCCTGCGCAAGAAGAAGGCCGCGAACTTGAACAGCATCATCCACCGCCTGGAGAAGGCCGCCAGCCGGGAGGAACCTATCGAATGGGAGTTCTGA MASPAASSVRPPRPKKEPQTLVIPKNAAEEQKLKLERLMKNPASAYLGRPS*GSPKALSLTSLPAPNPGISSV*KDESPSSGCSCG*TTPTMWRS*WT*NGWRRKPT*SGGTAQSVTASPANRPLSAPSTARAPAPSPSTS*RNPGWCWLRRRRRR*NERISKSHTRHQKPSKTSPPSST*KPAPSSTGSTTTGLGSAENCSLRKFRPGVRARRAPATHPRPAAAGRRPARRATAATAWRPLRAQAAPTPRSPSLRERPSGRRCRGRRSRRSRRPRGPRARTTPATTTTREAPWKARGPCPAPPPRPPPPRPRPPRTPLPQPPPRRGRAPRPRAPRRRPATAAAAAPPAGPARCRAFSASPRPRAPGTRATTPCARRRPRT*TASSTAWRRPPAGRNLSNGSS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation 31748 PID1::DNER ENSG00000153823.19::ENSG00000187957.8 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1656 TRUE 2975 TRUE 1133 PID1 ENSG00000153823.19 protein_coding - - chr2:228850526-229271287:- chr2:229271014:- chr2:229715242-230136003:- chr2:230135730:- DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229388396:- chr2:230222345-230579271:- chr2:230253112:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.09Mb];LOCAL_REARRANGEMENT:-:[86344] 8 9 8 4.24 ONLY_REF_SPLICE YES_LDAS 0.1454 GT 1.7819 AG 1.8323 ENST00000534952.1 1-30 ENST00000341772.5 1724-2214 chr2|-|[2]229271014-229271043[0]<==>chr2|-|[2]229358540-229358651[2]|[1]229366873-229367119[1]|[0]229388265-229388396[1] atgtggcagccggccacggagcgcctgcagGTGAAGAGTGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGCAAACTGTGAGATCCACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCATCATTGGAGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATCCTGATCGTGGGGATTTGCCGCATCAGCCGCATTGAATACCAGGGTTCTTCCAGGCCAGCCTATGAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAATGCCATTGCATCCATCCGGCATGCCAGGTTTGGAAAGAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATCGCCTATGAAGATTACAGTCCTGATGACAAACCCTTGGTCACACTGATTAAAACTAAAGATTTGTAA MWQPATERLQVKSATLT*MNVTVTPATMVGAAWTSPMVITATARMVGWEQTVRSTSNGSPGTWRRASPTCHGTPSTSSLEPSAWPSSLC*SS*SWGFAASAALNTRVLPGQPMRSSTTAAASTASSAMPLHPSGMPGLERNPGLQCMM*APSPMKITVLMTNPWSH*LKLKIC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Brain exact TRUE Lung adenocarcinoma LUNG exact 230020534 FALSE 230456604 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31749 PLEKHA1::TACC2 ENSG00000107679.15::ENSG00000138162.19 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1662 FALSE NA FALSE NA PLEKHA1 ENSG00000107679.15 protein_coding + + chr10:122374696-122432354:+ chr10:122413045:+ chr10:124134212-124191870:+ chr10:124172561:+ TACC2 ENSG00000138162.19 protein_coding + + chr10:121989163-122254545:+ chr10:122195040:+ chr10:123748678-124014060:+ chr10:123954555:+ chr10:122415466 chr10:122194325 NA NA chr10:124174982 chr10:123953840 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PH|10-112|5.6e-14^PH_11|11-109|0.00018^Mcp5_PH|22-109|2.8e-07^PH_8|24-110|4.3e-08^PH_9|70-109|4.6e-06^PH_13|77-118|0.015^PH|192-288|1e-22^PH_11|195-284|3.2e-09^PH_8|205-285|2.4e-06^Mcp5_PH|233-285|0.0024^PH_9|241-284|5.4e-05^PH_13|244-287|0.00056^PH_13|333-354|1.9^PH_9|339-364|0.9 NRIP1_repr_3|137-168|3.8^NRIP1_repr_3|233-273|4.1^Skp1_POZ|503-512|0.91^NRIP1_repr_3|783-819|5.5e-05^TACC_C|832-1032|1.1e-91^Skp1_POZ|868-908|8.1e-06^RH_dom|891-963|0.00029^NRIP1_repr_3|967-1008|0.71^PKcGMP_CC|1006-1024|0.00016 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.12Mb] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1306 GT 1.8062 AG 1.9656 ENST00000368990.8 1-468 ENST00000368999.5 69-3117 chr10|+|[0]122393201-122393341[2]|[0]122397918-122397974[2]|[0]122400343-122400388[0]|[1]122406576-122406673[2]|[0]122412920-122413045[2]<==>chr10|+|[2]122195040-122195176[0]|[1]122210397-122211708[1]|[2]122213342-122213377[1]|[2]122215391-122215451[2]|[0]122216627-122216828[0]|[1]122224726-122224787[2]|[0]122226366-122226481[1]|[2]122227837-122228008[2]|[0]122229346-122229486[2]|[0]122230351-122230440[2]|[0]122237395-122237538[2]|[0]122237961-122238037[1]|[2]122241958-122242001[0]|[1]122248643-122248803[2]|[0]122249050-122249156[1]|[2]122249544-122249664[2]|[0]122253991-122254056[2] atgccttatgtggatcgtcagaatcgcatttgtggttttctagacattgaagaaaatgaaaacagtgggaaatttcttcgaaggtacttcatactggataccagagaagatagtttcgtgtggtacatggataatccacagaacctaccttctggatcatcacgtgttggagccattaagcttacctacatttcaaaggttagcgatgctactaagctaaggccaaaggcggagttctgttttgttatgaatgcaggaatgaggaagtacttcctacaagccaatgatcagcaggacctagtggaatgggtaaatgtgttaaacaaagctataaaaattacagtaccaaagcagtcagactcacagcctaattctgataacctaagtcgccatggtgaatgtgggaaaaagcaagtgtcttacagaactgatattgttggtggcgtacccatcattactcccactcagGAGTTCCGATTCTGAAGAGGCATTTGAGACCCCGGAGTCAACGACCCCTGTCAAAGCTCCGCCAGCTCCACCCCCACCACCCCCCGAAGTCATCCCAGAACCCGAGGTCAGCACACAGCCACCCCCGGAAGAACCAGGATGTGGTTCTGAGACAGTCCCTGTCCCTGATGGCCCACGGAGCGACTCGGTGGAAGGAAGTCCCTTCCGTCCCCCGTCACACTCCTTCTCTGCCGTCTTCGATGAAGACAAGCCGATAGCCAGCAGTGGGACTTACAACTTGGACTTTGACAACATTGAGCTTGTGGATACCTTTCAGACCTTGGAGCCTCGTGCCTCAGACGCTAAGAATCAGGAGGGCAAAGTGAACACACGGAGGAAGTCCACGGATTCCGTCCCCATCTCTAAGTCTACACTGTCCCGGTCGCTCAGCCTGCAAGCCAGTGACTTTGATGGTGCTTCTTCCTCAGGCAATCCCGAGGCCGTGGCCCTTGCCCCAGATGCATATAGCACGGGTTCCAGCAGTGCTTCTAGTACCCTTAAGCGAACTAAAAAACCGAGGCCGCCTTCCTTAAAAAAGAAACAGACCACCAAGAAACCCACAGAGACCCCCCCAGTGAAGGAGACGCAACAGGAGCCAGATGAAGAGAGCCTTGTCCCCAGTGGGGAGAATCTAGCATCTGAGACGAAAACGGAATCTGCCAAGACGGAAGGTCCTAGCCCAGCCTTATTGGAGGAGACGCCCCTTGAGCCCGCTGTGGGGCCCAAAGCTGCCTGCCCTCTGGACTCAGAGAGTGCAGAAGGGGTTGTCCCCCCGGCTTCTGGAGGTGGCAGAGTGCAGAACTCACCCCCTGTCGGGAGGAAAACGCTGCCTCTTACCACGGCCCCGGAGGCAGGGGAGGTAACCCCATCGGATAGCGGGGGGCAAGAGGACTCTCCAGCCAAAGGGCTCTCCGTAAGGCTGGAGTTTGACTATTCTGAGGACAAGAGTAGTTGGGACAACCAGCAGGAAAACCCCCCTCCTACCAAAAAGATAGGCAAAAAGCCAGTTGCCAAAATGCCCCTGAGGAGGCCAAAGATGAAAAAGACACCCGAGAAACTTGACAACACTCCTGCCTCACCTCCCAGATCCCCTGCTGAACCCAATGACATCCCCATTGCTAAAGGTACTTACACCTTTGATATTGACAAGTGGGATGACCCCAATTTTAACCCTTTTTCTTCCACCTCAAAAATGCAGGAGTCTCCCAAACTGCCCCAACAATCATACAACTTTGACCCAGACACCTGTGATGAGTCCGTTGACCCCTTTAAGACATCCTCTAAGACCCCCAGCTCACCTTCTAAATCCCCAGCCTCCTTTGAGATCCCAGCCAGTGCTATGGAAGCCAATGGAGTGGACGGGGATGGGCTAAACAAGCCCGCCAAGAAGAAGAAGACGCCCCTAAAGACGATGGTTGAAGATGTGATGTCTGTGTGTTCTCTGTTTGACACATTTAGGGTGAAAAAGTCGCCAAAACGGTCTCCTCTCTCTGATCCACCTTCCCAGGACCCCACCCCAGCTGCTACACCAGAAACACCACCAGTGATCTCTGCGGTGGTCCACGCCACAGATGAGGAAAAGCTGGCGGTCACCAACCAGAAGTGGACGTGCATGACAGTGGACCTAGAGGCTGACAAACAGGACTACCCGCAGCCCTCGGACCTGTCCACCTTTGTAAACGAGACCAAATTCAGTTCACCCACTGAGGAGTTGGATTACAGAAACTCCTATGAAATTGAATATATGGAGAAAATTGGCTCCTCCTTACCTCAGGACGACGATGCCCCGAAGAAGCAGGCCTTGTACCTTATGTTTGACACTTCTCAGGAGAGCCCTGTCAAGTCATCTCCCGTCCGCATGTCAGAGTCCCCGACGCCGTGTTCAGGGTCAAGTTTTGAAGAGACTGAAGCCCTTGTGAACACTGCTGCGAAAAACCAGCATCCTGTCCCACGAGGACTGGCCCCTAACCAAGAGTCACACTTGCAGGTGCCAGAGAAATCCTCCCAGAAGGAGCTGGAGGCCATGGGCTTGGGCACCCCTTCAGAAGCGATTGAAATTACAGCTCCCGAGGGCTCCTTTGCCTCTGCTGACGCCCTCCTCAGCAGGCTAGCTCACCCCGTCTCTCTCTGTGGTGCACTTGACTATCTGGAGCCCGACTTAGCAGAAAAGAACCCCCCACTATTCGCTCAGAAACTCCAGGAGGAGTTAGAGTTTGCCATCATGCGGATAGAAGCCCTGAAGCTGGCCAGGCAGATTGCTTTGGCTTCCCGCAGCCACCAGGATGCCAAGAGAGAGGCTGCTCACCCAACAGACGTCTCCATCTCCAAAACAGCCTTGTACTCCCGCATCGGGACCGCTGAGGTGGAGAAACCTGCAGGCCTTCTGTTCCAGCAGCCCGACCTGGACTCTGCCCTCCAGATCGCCAGAGCAGAGATCATAACCAAGGAGAGAGAGGTCTCAGAATGGAAAGATAAATATGAAGAAAGCAGGCGGGAAGTGATGGAAATGAGGAAAATAGTGGCCGAGTATGAGAAGACCATCGCTCAGATGATAGAGGACGAACAGAGAGAGAAGTCAGTCTCCCACCAGACGGTGCAGCAGCTGGTTCTGGAGAAGGAGCAAGCCCTGGCCGACCTGAACTCCGTGGAGAAGTCTCTGGCCGACCTCTTCAGAAGATATGAGAAGATGAAGGAGGTCCTAGAAGGCTTCCGCAAGAATGAAGAGGTGTTGAAGAGATGTGCGCAGGAGTACCTGTCCCGGGTGAAGAAGGAGGAGCAGAGGTACCAGGCCCTGAAGGTGCACGCGGAGGAGAAACTGGACAGGGCCAATGCTGAGATTGCTCAGGTTCGAGGCAAGGCCCAGCAGGAGCAAGCCGCCCACCAGGCCAGCCTGCGGAAGGAGCAGCTGCGAGTGGACGCCCTGGAAAGGACGCTGGAGCAGAAGAATAAAGAAATAGAAGAACTCACCAAGATTTGTGACGAACTGATTGCCAAAATGGGGAAAAGCTAA MPYVDRQNRICGFLDIEENENSGKFLRRYFILDTREDSFVWYMDNPQNLPSGSSRVGAIKLTYISKVSDATKLRPKAEFCFVMNAGMRKYFLQANDQQDLVEWVNVLNKAIKITVPKQSDSQPNSDNLSRHGECGKKQVSYRTDIVGGVPIITPTQEFRF*RGI*DPGVNDPCQSSASSTPTTPRSHPRTRGQHTATPGRTRMWF*DSPCP*WPTERLGGRKSLPSPVTLLLCRLR*RQADSQQWDLQLGL*QH*ACGYLSDLGASCLRR*ESGGQSEHTEEVHGFRPHL*VYTVPVAQPASQ*L*WCFFLRQSRGRGPCPRCI*HGFQQCF*YP*AN*KTEAAFLKKETDHQETHRDPPSEGDATGAR*REPCPQWGESSI*DENGICQDGRS*PSLIGGDAP*ARCGAQSCLPSGLRECRRGCPPGFWRWQSAELTPCREENAASYHGPGGRGGNPIG*RGARGLSSQRALRKAGV*LF*GQE*LGQPAGKPPSYQKDRQKASCQNAPEEAKDEKDTRET*QHSCLTSQIPC*TQ*HPHC*RYLHL*Y*QVG*PQF*PFFFHLKNAGVSQTAPTIIQL*PRHL**VR*PL*DIL*DPQLTF*IPSLL*DPSQCYGSQWSGRGWAKQARQEEEDAPKDDG*RCDVCVFSV*HI*GEKVAKTVSSL*STFPGPHPSCYTRNTTSDLCGGPRHR*GKAGGHQPEVDVHDSGPRG*QTGLPAALGPVHLCKRDQIQFTH*GVGLQKLL*N*IYGENWLLLTSGRRCPEEAGLVPYV*HFSGEPCQVISRPHVRVPDAVFRVKF*RD*SPCEHCCEKPASCPTRTGP*PRVTLAGAREILPEGAGGHGLGHPFRSD*NYSSRGLLCLC*RPPQQASSPRLSLWCT*LSGARLSRKEPPTIRSETPGGVRVCHHADRSPEAGQADCFGFPQPPGCQERGCSPNRRLHLQNSLVLPHRDR*GGETCRPSVPAARPGLCPPDRQSRDHNQGERGLRMER*I*RKQAGSDGNEENSGRV*EDHRSDDRGRTEREVSLPPDGAAAGSGEGASPGRPELRGEVSGRPLQKI*EDEGGPRRLPQE*RGVEEMCAGVPVPGEEGGAEVPGPEGARGGETGQGQC*DCSGSRQGPAGASRPPGQPAEGAAASGRPGKDAGAEE*RNRRTHQDL*RTDCQNGEKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31750 PID1::DNER ENSG00000153823.19::ENSG00000187957.8 NCIH1184 SRR8615901 SRR8652137 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1655 TRUE 2975 TRUE 1133 PID1 ENSG00000153823.19 protein_coding - - chr2:228850526-229271287:- chr2:229262683:- chr2:229715242-230136003:- chr2:230127399:- DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229388396:- chr2:230222345-230579271:- chr2:230253112:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PID_2-PARTIAL|90-123~|1.2e-21 none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.09Mb];LOCAL_REARRANGEMENT:-:[86344] 6 11 6 5.8 ONLY_REF_SPLICE YES_LDAS 0.1402 GT 1.8892 AG 1.8323 ENST00000392054.7 1-123 ENST00000341772.5 1724-2214 chr2|-|[2]229262683-229262805[0]<==>chr2|-|[2]229358540-229358651[2]|[1]229366873-229367119[1]|[0]229388265-229388396[1] atgccaaggattgctggcaaccacctgatgttagaagagtcgaggacatgttcttctccagagcttttggatggtgtgtggccctgccaacctttacattttggacttccagcctccgaaatgGTGAAGAGTGCGACATTGACATAAATGAATGTGACAGTAACCCCTGCCACCATGGTGGGAGCTGCCTGGACCAGCCCAATGGTTATAACTGCCACTGCCCGCATGGTTGGGTGGGAGCAAACTGTGAGATCCACCTCCAATGGAAGTCCGGGCACATGGCGGAGAGCCTCACCAACATGCCACGGCACTCCCTCTACATCATCATTGGAGCCCTCTGCGTGGCCTTCATCCTTATGCTGATCATCCTGATCGTGGGGATTTGCCGCATCAGCCGCATTGAATACCAGGGTTCTTCCAGGCCAGCCTATGAGGAGTTCTACAACTGCCGCAGCATCGACAGCGAGTTCAGCAATGCCATTGCATCCATCCGGCATGCCAGGTTTGGAAAGAAATCCCGGCCTGCAATGTATGATGTGAGCCCCATCGCCTATGAAGATTACAGTCCTGATGACAAACCCTTGGTCACACTGATTAAAACTAAAGATTTGTAA MPRIAGNHLMLEESRTCSSPELLDGVWPCQPLHFGLPASEMVKSATLT*MNVTVTPATMVGAAWTSPMVITATARMVGWEQTVRSTSNGSPGTWRRASPTCHGTPSTSSLEPSAWPSSLC*SS*SWGFAASAALNTRVLPGQPMRSSTTAAASTASSAMPLHPSGMPGLERNPGLQCMM*APSPMKITVLMTNPWSH*LKLKIC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Brain exact TRUE Lung adenocarcinoma LUNG exact 230020534 FALSE 230456604 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31754 STK40::OSCP1 ENSG00000196182.11::ENSG00000116885.18 NCIH1341 SRR8615904 SRR8652143 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1663 TRUE 2990 TRUE 1137 STK40 ENSG00000196182.11 protein_coding - - chr1:36339624-36385924:- chr1:36361221:- chr1:36805225-36851525:- chr1:36826822:- OSCP1 ENSG00000116885.18 protein_coding - - chr1:36415827-36450451:- chr1:36438910:- chr1:36881428-36916052:- chr1:36904511:- chr1:36358991,chr1:36358994 chr1:36440715,chr1:36440715 NA NA chr1:36824592,chr1:36824595 chr1:36906316,chr1:36906316 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|81-112~|2.6e-40^PK_Tyr_Ser-Thr-PARTIAL|83-112~|1.9e-21 Oscp1-PARTIAL|~143-199|1.2e-74 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:-:[29931] 36 16 36 15.31 ONLY_REF_SPLICE YES_LDAS 0.551 GT 1.9086 AG 1.9086 ENST00000373129.7 1-112 ENST00000356637.9 143-1170 chr1|-|[0]36361221-36361332[0]<==>chr1|-|[2]36418139-36418255[0]|[2]36418991-36419054[2]|[1]36420476-36420615[0]|[2]36422150-36422219[2]|[1]36422768-36422896[2]|[1]36423363-36423466[0]|[2]36431802-36431882[0]|[2]36432422-36432589[0]|[2]36438756-36438910[1] atgaagcggagagcatcagacagaggagctggggaaacgtcggccagggccaaggctctaggaagtgggatttctggaaataatgcaaagagagctggaccattcatccttgTTCTGAATGACATCATCTCCACCATGTTCAATAGAAAGTTTATGGAGGAATTATTCAAGCCTCAAGAGCTCTACTCCAAGAAGGCCCTGAGGACTGTCTATGAGCGCCTGGCTCATGCCTCCATTATGAAACTGAACCAGGCCAGCATGGATAAGCTCTATGACCTGATGACCATGGCTTTCAAATATCAAGTATTGCTGTGTCCCCGACCCAAGGATGTGCTGCTGGTCACTTTCAATCACTTGGATACCATCAAGGGATTCATCCGAGACTCCCCAACCATCCTGCAGCAAGTGGACGAGACTTTGCGGCAGCTGACAGAAATATATGGTGGTCTCTCTGCAGGGGAGTTCCAGCTGATCCGGCAGACACTCCTCATCTTCTTCCAAGACCTGCACATCCGAGTATCCATGTTTCTAAAGGACAAAGTTCAGAATAATAACGGTCGCTTTGTGTTGCCGGTGTCCGGGCCTGTTCCTTGGGGAACTGAAGTTCCAGGACTCATCAGAATGTTCAACAACAAAGGTGAAGAAGTGAAGAGGATAGAATTCAAGCATGGTGGAAACTATGTCCCTGCACCCAAAGAAGGTTCTTTTGAACTTTATGGAGACCGAGTCCTGAAACTGGGAACTAACATGTACAGCGTGAATCAGCCTGTGGAAACTCATGTGTCTGGATCATCAAAGAACTTAGCCTCATGGACCCAGGAAAGCATTGCTCCAAACCCTCTTGCTAAAGAAGAGCTGAATTTCTTGGCCAGGCTGATGGGAGGGATGGAGATTAAGAAACCCAGTGGCCCTGAGCCCGGATTCCGGTTGAATCTCTTTACCACCGATGAAGAAGAGGAACAAGCAGCGCTAACCAGGCCAGAAGAGTTATCCTATGAAGTTATCAACATACAAGCCACCCAGGACCAGCAACGGAGCGAGGAGCTGGCTCGAATCATGGGGGAGTTTGAGATCACGGAGCAGCCAAGGCTGAGCACCAGCAAAGGGGACGATTTGCTCGCCATGATGGATGAGTTATAG MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEITEQPRLSTSKGDDLLAMMDEL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 40 CAMK SgK495 Q8N2I9 FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 36851324 FALSE 36904511 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31755 STK40::OSCP1 ENSG00000196182.11::ENSG00000116885.18 NCIH1341 SRR8615904 SRR8652143 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1664 TRUE 2990 TRUE 1137 STK40 ENSG00000196182.11 protein_coding - - chr1:36339624-36385924:- chr1:36385723:- chr1:36805225-36851525:- chr1:36851324:- OSCP1 ENSG00000116885.18 protein_coding - - chr1:36415827-36450451:- chr1:36438910:- chr1:36881428-36916052:- chr1:36904511:- chr1:36358991,chr1:36358994 chr1:36440715,chr1:36440715 NA NA chr1:36824592,chr1:36824595 chr1:36906316,chr1:36906316 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:-:[29931] 10 4 10 0.69 ONLY_REF_SPLICE YES_LDAS 0.1148 GT 1.5656 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase 40 CAMK SgK495 Q8N2I9 FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 36851324 TRUE 36904511 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31762 PDE4D::CCNO-DT ENSG00000113448.21::ENSG00000251307.1 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- CCNO-DT ENSG00000251307.1 lncRNA + + chr5:55233934-55295201:+ chr5:55279533:+ chr5:54529762-54591029:+ chr5:54575361:+ chr5:59143117,chr5:59143130 chr5:55268828,chr5:55268815 NA NA chr5:58438944,chr5:58438957 chr5:54564656,chr5:54564643 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDE4D:Oncogene"] 16 10 16 8.55 ONLY_REF_SPLICE YES_LDAS 0.2211 GT 1.6895 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31763 YAF2::LRRK2 ENSG00000015153.15::ENSG00000188906.17 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1665 FALSE NA FALSE NA YAF2 ENSG00000015153.15 protein_coding - - chr12:42157104-42238349:- chr12:42210355:- chr12:42550906-42632151:- chr12:42604157:- LRRK2 ENSG00000188906.17 protein_coding + + chr12:40196744-40369285:+ chr12:40294845:+ chr12:40590546-40763087:+ chr12:40688647:+ chr12:42173483,chr12:42173379,chr12:42173492,chr12:42173387,chr12:42173383 chr12:40294594,chr12:40294589,chr12:40294589,chr12:40294589,chr12:40294589 NA NA chr12:42567285,chr12:42567181,chr12:42567294,chr12:42567189,chr12:42567185 chr12:40688396,chr12:40688391,chr12:40688391,chr12:40688391,chr12:40688391 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.79Mb] 14 6 14 2.83 ONLY_REF_SPLICE YES_LDAS 0.1515 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Leucine-rich repeat serine/threonine-protein kinase 2 TKL LRRK Q5S007 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31766 C7orf50::MAD1L1 ENSG00000146540.15::ENSG00000002822.16 NCIH1355 SRR8615905 SRR8652144 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 1666 FALSE NA FALSE NA C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1127257:- chr7:1036622-1177896:- chr7:1166893:- MAD1L1 ENSG00000002822.16 protein_coding - - chr7:1815793-2233243:- chr7:1980541:- chr7:1855429-2272878:- chr7:2020176:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WKF-PARTIAL|104-129~|2.3e-28 none ["MAD1L1:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.68Mb] 10 9 10 9 ONLY_REF_SPLICE YES_LDAS 0.171 GT 1.7819 AG 1.8295 ENST00000491163.1 1-129 ENST00000265854.12 1417-2157 chr7|-|[2]1127257-1127385[0]<==>chr7|-|[2]1816070-1816228[0]|[2]1898200-1898390[1]|[0]1936687-1936897[0]|[2]1957629-1957719[2]|[1]1980453-1980541[0] atggcaaaacagaagagaaaagttcctgaagtgacagagaaaaagaacaaaaagctgaagaaggcgtcagcagaggggccactgctgggccctgaggctgcaccaagtggcgaaggagccggctccaagCTGGAGATGGAGCTGAAGATGCTGAAGTCTCAGTCCAGCTCTGCCGAACAGAGCTTCCTGTTCTCCAGGGAGGAGGCGGACACGCTCAGGTTGAAGGTCGAGGAGCTGGAAGGCGAGCGGAGTCGGCTGGAGGAGGAAAAGAGGATGCTGGAGGCACAGCTGGAGCGGCGAGCTCTGCAGGGTGACTATGACCAGAGCAGGACCAAAGTGCTGCACATGAGCCTGAACCCCACCAGTGTGGCCAGGCAGCGCCTGCGCGAGGACCACAGCCAGCTGCAGGCGGAGTGCGAGCGACTGCGCGGGCTCCTGCGCGCCATGGAGAGAGGAGGCACCGTCCCAGCCGACCTTGAGGCTGCCGCCGCGAGTCTGCCATCGTCCAAGGAGGTGGCAGAGCTGAAGAAGCAGGTGGAGAGTGCCGAGCTGAAGAACCAGCGGCTCAAGGAGGTTTTCCAGACCAAGATCCAGGAGTTCCGCAAGGCCTGCTACACGCTCACCGGCTACCAGATCGACATCACCACGGAGAACCAGTACCGGCTGACCTCGCTGTACGCCGAGCACCCAGGCGACTGCCTCATCTTCAAGGCCACCAGCCCCTCGGGTTCCAAGATGCAGCTACTGGAGACAGAGTTCTCACACACCGTGGGCGAGCTCATCGAGGTGCACCTGCGGCGCCAGGACAGCATCCCTGCCTTCCTCAGCTCGCTCACCCTCGAGCTCTTCAGCCGCCAGACCGTGGCGTAG MAKQKRKVPEVTEKKNKKLKKASAEGPLLGPEAAPSGEGAGSKLEMELKMLKSQSSSAEQSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA* FALSE FALSE NA NA TRUE hsa-mir-4655 chr7:1844180-1844253:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Corpus Endometrial Carcinoma,Esophageal carcinoma,Uterine Carcinosarcoma UTERUS,OESOPHAGUS,UTERUS no_match 1166893,1166893|1067894,1166893|1166893 TRUE,TRUE|FALSE,TRUE|TRUE 2041756,1855864|1855864,1855864|1938026 FALSE,FALSE|FALSE,FALSE|FALSE YES,PARTIALLY,PARTIALLY In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31769 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1668 TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154170400:- chr1:154127784-154167124:- chr1:154142876:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156874571:+ chr1:156785428-156851642:+ chr1:156844363:+ chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Laminin_I|1-84|0.00059^Tropomyosin|2-83|2.3e-17^DUF745|2-87|0.046^FPP|3-99|0.00048^CENP-F_leu_zip|5-119|0.046^MAD|5-116|0.0014^DUF1664|5-78|0.0057^DUF4200|5-62|0.00017^Crescentin|13-107|0.0012^XhlA|13-52|0.088^CLZ|14-73|9e-09^CHASE3|15-57|0.76^Nuf2_DHR10-like|16-72|0.3^ADIP|16-72|0.045^SNARE|17-38|2.4^ATG16|18-107|6.4e-06^HrpB7|18-92|2.2e-05^HEF_HK|18-51|1.1^Lebercilin|21-132|0.066^Fib_alpha|21-73|0.031^TMF_DNA_bd|23-55|0.56^Exonuc_VII_L|23-141|0.0049^ERM_helical|24-131|0.0003^Fmp27_WPPW|26-122|0.81^Laminin_II|31-105|5.9e-05^TMF_DNA_bd|35-83|0.038^Arc_MA|35-116|0.0043^HEF_HK|39-67|2.1^XhlA|47-90|0.0018^CHASE3|51-131|0.00026^SNARE|51-71|0.18^TMF_DNA_bd|57-110|0.00031^Nuf2_DHR10-like|57-123|3.5e-05^HrpB7|63-124|0.0055^Tropomyosin|68-284|1.3e-72^Laminin_II|69-141|0.0064^THAP4_heme-bd|69-117|0.034^CLZ|77-118|0.0035^Crescentin|81-221|0.053^DUF745|83-189|0.0001^DUF1664|87-143|0.052^ERM_helical|89-168|1.8^Laminin_I|90-166|0.024^HrpB7|91-125|0.19^XhlA|92-122|0.023^HEF_HK|94-131|0.17^FPP|97-235|0.0022^Fib_alpha|97-158|0.22^SNARE|97-128|0.0036^Lebercilin|102-179|5.3^ATG16|103-182|3^XhlA|111-151|0.17^TMF_DNA_bd|114-153|4.5^Arc_MA|120-120|1.4^Lebercilin|134-283|0.0086^Nuf2_DHR10-like|137-197|2.2^CENP-F_leu_zip|138-284|3.8e-05^HrpB7|139-197|0.12^MAD|139-267|0.00047^Crescentin|140-281|0.0012^Laminin_I|140-220|0.17^CLZ|141-178|2.4^Exonuc_VII_L|142-262|0.02^THAP4_heme-bd|144-189|0.014^XhlA|145-170|2^DUF1664|148-196|0.052^HEF_HK|148-175|3.9^Laminin_II|152-199|0.0013^CHASE3|155-239|0.0029^Laminin_I|159-277|0.038^Fib_alpha|160-263|0.002^ERM_helical|161-267|0.021^XhlA|167-206|0.0051^CLZ|173-217|0.074^SNARE|173-190|1.6^HEF_HK|176-209|0.11^Fmp27_WPPW|183-258|0.00027^ATG16|188-267|0.014^Laminin_II|191-270|4.2e-08^DUF4200|192-276|0.0027^TMF_DNA_bd|194-262|2.4e-06^DUF1664|199-260|0.0031^ADIP|199-276|0.00018^Nuf2_DHR10-like|211-262|0.41^DUF745|214-279|0.023^THAP4_heme-bd|216-231|3.1^XhlA|222-262|0.0071^Arc_MA|228-257|0.12^CLZ|231-283|2.6e-05^HEF_HK|231-262|0.066^SNARE|233-254|0.25^HrpB7|234-277|0.0076 none ["TPM3:Oncogene"];["NTRK1:FoundationOne_panel","NTRK1:ArcherDX_panel","NTRK1:Oncogene"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","HaasMedCancer","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr1:2.62Mb] 185 127 184.95 66.59 ONLY_REF_SPLICE YES_LDAS 2.547 GT 1.9329 AG 1.6895 ENST00000271850.11 1-775 ENST00000358660.3 1178-2382 chr1|-|[0]154170400-154170469[0]|[2]154170649-154170711[0]|[2]154172029-154172104[2]|[1]154172908-154172978[0]|[2]154173084-154173201[2]|[1]154176115-154176248[0]|[2]154191186-154191311[0]|[2]154191902-154192018[0]<==>chr1|+|[1]156874571-156874626[2]|[0]156874906-156875008[0]|[1]156875520-156875666[0]|[1]156876071-156876210[2]|[0]156876400-156876572[1]|[2]156879122-156879362[2]|[0]156879999-156880157[2]|[0]156881457-156881642[2] atgatggaggccatcaagaaaaagatgcagatgctgaagttagacaaggagaatgctctggatcgggcagagcaagctgaagctgagcagaagcaggcagaagaaagaagtaaacagctggaggatgagctggcagccatgcagaagaagctgaaagggacagaggatgagctggacaagtattctgaagctttgaaggatgcccaggagaagctggaactggcagagaagaaggctgctgatgctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaagagctggaccgtgctcaggagcgcctggccactgccctgcaaaagctggaagaagctgaaaaagctgctgatgagagtgagagaggtatgaaggttattgaaaaccgggccttaaaagatgaagaaaagatggaactccaggaaatccaactcaaagaagctaagcacattgcagaagaggcagataggaagtatgaagaggtggctcgtaagttggtgatcattgaaggagacttggaacgcacagaggaacgagctgagctggcagagtcccgttgccgagagatggatgagcagattagactgatggaccagaacctgaagtgtctgagtgctgctgaagaaaagtactctcaaaaagaagataaatatgaggaagaaatcaagattcttactgataaactcaaggaggcagagacccgtgctgagtttgctgagagatcggtagccaagctggaaaagacaattgatgacctggaagACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGGGTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACCGCCCGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTGCATTTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGGCAAAGGCTCTGGGCTCCAAGGCCACATCATCGAGAACCCACAATACTTCAGTGATGCCTCCCCCTCAGGTGTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGTCTTCCTTGCTGAGTGCCACAACCTCCTGCCTGAGCAGGACAAGATGCTGGTGGCTGTCAAGGCACTGAAGGAGGCGTCCGAGAGTGCTCGGCAGGACTTCCAGCGTGAGGCTGAGCTGCTCACCATGCTGCAGCACCAGCACATCGTGCGCTTCTTCGGCGTCTGCACCGAGGGCCGCCCCCTGCTCATGGTCTTTGAGTATATGCGGCACGGGGACCTCAACCGCTTCCTCCGATCCCATGGACCTGATGCCAAGCTGCTGGCTGGTGGGGAGGATGTGGCTCCAGGCCCCCTGGGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAGGTCGCTGCGGGGATGGTGTACCTGGCGGGTCTGCATTTTGTGCACCGGGACCTGGCCACACGCAACTGTCTAGTGGGCCAGGGACTGGTGGTCAAGATTGGTGATTTTGGCATGAGCAGGGATATCTACAGCACCGACTATTACCGTGTGGGAGGCCGCACCATGCTGCCCATTCGCTGGATGCCGCCCGAGAGCATCCTGTACCGTAAGTTCACCACCGAGAGCGACGTGTGGAGCTTCGGCGTGGTGCTCTGGGAGATCTTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAGGCAATCGACTGCATCACGCAGGGACGTGAGTTGGAGCGGCCACGTGCCTGCCCACCAGAGGTCTACGCCATCATGCGGGGCTGCTGGCAGCGGGAGCCCCAGCAACGCCACAGCATCAAGGATGTGCACGCCCGGCTGCAAGCCCTGGCCCAGGCACCTCCTGTCTACCTGGATGTCCTGGGCTAG MMEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDTNSTSGDPVEKKDETPFGVSVAVGLAVFACLFLSTLLLVLNKCGRRNKFGINRPAVLAPEDGLAMSLHFMTLGGSSLSPTEGKGSGLQGHIIENPQYFSDASPSGVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYLDVLG* FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 TRUE|TRUE|TRUE,TRUE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 31770 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1669 TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154169305:- chr1:154127784-154167124:- chr1:154141781:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156874571:+ chr1:156785428-156851642:+ chr1:156844363:+ chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Laminin_I|1-84|0.00074^Tropomyosin|2-83|3e-17^DUF745|2-87|0.061^FPP|3-99|0.00068^DUF3450|4-60|0.0074^AAA_13|4-209|0.21^CENP-F_leu_zip|5-119|0.063^DUF1664|5-78|0.0069^MAD|5-116|0.0031^Fez1|5-57|1.5^DUF4200|5-62|0.00023^SlyX|7-25|8.6^Golgin_A5|10-116|0.022^CCDC22_CC|11-95|0.00098^Crescentin|13-108|0.0012^XhlA|13-52|0.26^CLZ|14-73|1.1e-08^Nuf2_DHR10-like|16-72|0.4^MscS_porin|16-146|0.014^ADIP|16-72|0.046^SNARE|17-38|3.3^ATG16|18-107|1e-05^HrpB7|18-92|3.3e-05^FUSC|18-129|0.0032^DUF5930|19-134|0.0029^Lebercilin|21-123|0.022^Fib_alpha|21-73|0.025^SlyX|22-73|0.3^TMF_DNA_bd|23-55|0.91^EzrA|23-94|0.032^ERM_helical|24-140|0.081^TMF_DNA_bd|30-83|0.041^Laminin_II|31-106|0.00015^Baculo_PEP_C|33-67|0.071^Arc_MA|35-116|0.0063^DUF16|37-107|0.48^NPV_P10|38-73|0.057^DUF3450|47-129|0.089^XhlA|47-90|0.0028^SNARE|51-71|0.24^TMF_DNA_bd|57-110|0.00044^Nuf2_DHR10-like|57-123|3.5e-05^Fez1|64-170|0.03^Tropomyosin|68-284|5.9e-81^HrpB7|68-123|0.017^Laminin_II|69-141|0.018^SlyX|69-125|0.0069^THAP4_heme-bd|69-117|0.047^ADIP|69-129|0.3^CLZ|76-118|0.0087^Crescentin|82-260|5.5e-05^DUF745|83-189|0.00019^NPV_P10|85-114|0.31^Baculo_PEP_C|86-116|0.087^DUF1664|87-142|0.034^HrpB7|91-124|0.13^Laminin_I|91-166|0.02^ERM_helical|91-201|1.5^XhlA|92-123|0.029^EzrA|92-249|0.0045^FPP|97-235|0.0083^Fib_alpha|97-157|0.93^SNARE|97-128|0.005^ATG16|103-182|3.3^CCDC22_CC|103-261|0.95^XhlA|111-151|0.21^TMF_DNA_bd|114-153|7.3^DUF16|123-184|0.73^Fez1|124-269|0.0021^DUF5930|125-279|0.088^Golgin_A5|131-160|8.3^Lebercilin|134-282|5.8e-05^MscS_porin|134-270|0.041^CENP-F_leu_zip|138-282|2.1e-05^Nuf2_DHR10-like|138-186|2.1^HrpB7|139-197|0.013^SlyX|139-180|5.6^MAD|139-274|0.0035^CLZ|141-170|3.7^THAP4_heme-bd|144-191|0.013^DUF1664|147-196|0.026^DUF3450|149-214|0.024^AAA_13|149-275|0.011^Laminin_II|152-198|0.0035^Baculo_PEP_C|155-209|0.059^ERM_helical|157-271|0.024^ADIP|165-237|0.057^XhlA|166-211|1.2e-05^NPV_P10|171-230|0.006^Golgin_A5|172-282|0.016^CLZ|173-218|0.0034^SNARE|173-188|4.2^Laminin_I|176-275|0.01^TMF_DNA_bd|178-207|0.85^ATG16|181-276|0.0011^DUF745|188-283|0.00011^SlyX|188-241|0.0049^Laminin_II|189-276|2e-08^FUSC|190-282|0.0033^HrpB7|193-278|0.0076^Arc_MA|193-218|1.3^DUF1664|194-259|0.0012^DUF16|194-235|0.0032^Fib_alpha|194-278|0.00048^DUF3450|195-283|1.1e-05^Baculo_PEP_C|197-262|0.021^FPP|203-270|0.0057^DUF4200|203-277|0.0049^TMF_DNA_bd|212-261|3.1e-06^EzrA|213-282|0.0015^ADIP|213-281|0.0079^THAP4_heme-bd|217-232|3.2^XhlA|222-259|0.028^Arc_MA|228-267|0.067^CLZ|232-280|0.0039^DUF16|232-281|0.00071^SNARE|233-254|0.37^SlyX|239-280|0.00022^XhlA|246-276|0.02^NPV_P10|247-273|0.39 none ["TPM3:Oncogene"];["NTRK1:FoundationOne_panel","NTRK1:ArcherDX_panel","NTRK1:Oncogene"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","HaasMedCancer","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr1:2.62Mb] 107 146 107 57.21 ONLY_REF_SPLICE YES_LDAS 1.6627 GT 1.9329 AG 1.6895 ENST00000651641.1 1-854 ENST00000358660.3 1178-2382 chr1|-|[1]154169305-154169383[1]|[0]154170400-154170469[0]|[2]154170649-154170711[0]|[2]154171413-154171488[2]|[1]154172908-154172978[0]|[2]154173084-154173201[2]|[1]154176115-154176248[0]|[2]154191186-154191311[0]|[2]154191902-154192018[0]<==>chr1|+|[1]156874571-156874626[2]|[0]156874906-156875008[0]|[1]156875520-156875666[0]|[1]156876071-156876210[2]|[0]156876400-156876572[1]|[2]156879122-156879362[2]|[0]156879999-156880157[2]|[0]156881457-156881642[2] atgatggaggccatcaagaaaaagatgcagatgctgaagttagacaaggagaatgctctggatcgggcagagcaagctgaagctgagcagaagcaggcagaagaaagaagtaaacagctggaggatgagctggcagccatgcagaagaagctgaaagggacagaggatgagctggacaagtattctgaagctttgaaggatgcccaggagaagctggaactggcagagaagaaggctgctgatgctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaagagctggaccgtgctcaggagcgcctggccactgccctgcaaaagctggaagaagctgaaaaagctgctgatgagagtgagagaggtatgaaggttattgaaaaccgggccttaaaagatgaagaaaagatggaactccaggaaatccaactcaaagaagctaagcacattgcagaagaggcagataggaagtatgaagaggtggctcgtaagttggtgatcattgaaggagacttggaacgcacagaggaacgagctgagctggcagagtctaagtgttctgagctggaggaggagctgaagaatgtcaccaacaacctcaagtctcttgaggctcaggcggagaagtactctcaaaaagaagataaatatgaggaagaaatcaagattcttactgataaactcaaggaggcagagacccgtgctgagtttgctgagagatcggtagccaagctggaaaagacaattgatgacctggaagatgagctctatgcccagaaactgaagtacaaggccattagcgaggagctggaccacgccctcaatgacatgacctctatACACTAACAGCACATCTGGAGACCCGGTGGAGAAGAAGGACGAAACACCTTTTGGGGTCTCGGTGGCTGTGGGCCTGGCCGTCTTTGCCTGCCTCTTCCTTTCTACGCTGCTCCTTGTGCTCAACAAATGTGGACGGAGAAACAAGTTTGGGATCAACCGCCCGGCTGTGCTGGCTCCAGAGGATGGGCTGGCCATGTCCCTGCATTTCATGACATTGGGTGGCAGCTCCCTGTCCCCCACCGAGGGCAAAGGCTCTGGGCTCCAAGGCCACATCATCGAGAACCCACAATACTTCAGTGATGCCTCCCCCTCAGGTGTTCACCACATCAAGCGCCGGGACATCGTGCTCAAGTGGGAGCTGGGGGAGGGCGCCTTTGGGAAGGTCTTCCTTGCTGAGTGCCACAACCTCCTGCCTGAGCAGGACAAGATGCTGGTGGCTGTCAAGGCACTGAAGGAGGCGTCCGAGAGTGCTCGGCAGGACTTCCAGCGTGAGGCTGAGCTGCTCACCATGCTGCAGCACCAGCACATCGTGCGCTTCTTCGGCGTCTGCACCGAGGGCCGCCCCCTGCTCATGGTCTTTGAGTATATGCGGCACGGGGACCTCAACCGCTTCCTCCGATCCCATGGACCTGATGCCAAGCTGCTGGCTGGTGGGGAGGATGTGGCTCCAGGCCCCCTGGGTCTGGGGCAGCTGCTGGCCGTGGCTAGCCAGGTCGCTGCGGGGATGGTGTACCTGGCGGGTCTGCATTTTGTGCACCGGGACCTGGCCACACGCAACTGTCTAGTGGGCCAGGGACTGGTGGTCAAGATTGGTGATTTTGGCATGAGCAGGGATATCTACAGCACCGACTATTACCGTGTGGGAGGCCGCACCATGCTGCCCATTCGCTGGATGCCGCCCGAGAGCATCCTGTACCGTAAGTTCACCACCGAGAGCGACGTGTGGAGCTTCGGCGTGGTGCTCTGGGAGATCTTCACCTACGGCAAGCAGCCCTGGTACCAGCTCTCCAACACGGAGGCAATCGACTGCATCACGCAGGGACGTGAGTTGGAGCGGCCACGTGCCTGCCCACCAGAGGTCTACGCCATCATGCGGGGCTGCTGGCAGCGGGAGCCCCAGCAACGCCACAGCATCAAGGATGTGCACGCCCGGCTGCAAGCCCTGGCCCAGGCACCTCCTGTCTACCTGGATGTCCTGGGCTAG MMEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSIH*QHIWRPGGEEGRNTFWGLGGCGPGRLCLPLPFYAAPCAQQMWTEKQVWDQPPGCAGSRGWAGHVPAFHDIGWQLPVPHRGQRLWAPRPHHREPTILQ*CLPLRCSPHQAPGHRAQVGAGGGRLWEGLPC*VPQPPA*AGQDAGGCQGTEGGVRECSAGLPA*G*AAHHAAAPAHRALLRRLHRGPPPAHGL*VYAARGPQPLPPIPWT*CQAAGWWGGCGSRPPGSGAAAGRG*PGRCGDGVPGGSAFCAPGPGHTQLSSGPGTGGQDW*FWHEQGYLQHRLLPCGRPHHAAHSLDAAREHPVP*VHHRERRVELRRGALGDLHLRQAALVPALQHGGNRLHHAGT*VGAATCLPTRGLRHHAGLLAAGAPATPQHQGCARPAASPGPGTSCLPGCPGL FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 FALSE|FALSE|FALSE,FALSE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,TRUE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 31771 RNF125::RPRD1A ENSG00000101695.9::ENSG00000141425.18 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1670 FALSE NA FALSE NA RNF125 ENSG00000101695.9 protein_coding + + chr18:32018825-32073219:+ chr18:32042273:+ chr18:29598788-29653182:+ chr18:29622236:+ RPRD1A ENSG00000141425.18 protein_coding - - chr18:35984387-36067576:- chr18:35993300:- chr18:33564350-33647539:- chr18:33573263:- chr18:32045027 chr18:36019413 NA NA chr18:29624990 chr18:33599376 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-Nse|33-75|2.4e-07^zf-Di19|35-42|2.6^U-box|35-84|1.4e-06^zf-RING_2|36-76|1.5e-11^zf-C3HC4_3|36-77|3.1e-10^zf-RING_6|36-75|1.8e-05^zf-C3HC4_2|37-75|4.1e-15^zf-RING_UBOX|37-73|2.8e-14^zf-C3HC4|37-75|8e-13^zf-C3HC4_4|37-75|2e-12^zf-RING_5|37-76|3.4e-09^TRAF3_RING|37-75|7.3e-08^zf-RING_10|37-78|5.3e-07^Prok-RING_4|37-77|5.6e-07^zf-rbx1|47-76|1.9e-05^Rad50_zn_hook|62-99|0.0017^zf-Di19|69-117|0.012^zf-C3HC4_3|92-105|1.5^zf-C3HC4|93-103|0.96^zf_C2HC_14|94-126|3.7e-18^TRAF3_RING|101-114|3.4^Prok-RING_4|103-109|3.6^zf-rbx1|106-121|2.4^zf-C3HC4_2|107-112|5.2^zf-RING_UBOX|107-113|7.3^zf-RING_2|107-145|8.6^zf-C3HC4_3|107-107|5.7^zf-RING_10|112-123|7.8^zf-Nse|120-144|0.96^zf-RING_10|128-147|1.7^zf-RING_2|130-174|0.29^Rad50_zn_hook|132-152|0.0009^zf-C3HC4_3|138-147|0.067^U-box|138-156|2^zf-rbx1|138-145|1.7^zf-Di19|140-196|3.9e-14^Prok-RING_4|140-150|0.0068^zf-C3HC4_2|141-158|1.5^zf-RING_UBOX|156-171|0.31^zf-RING_5|156-174|0.062^zf-rbx1|156-174|0.028^zf-C3HC4_4|157-173|0.31^zf-C3HC4_3|157-174|0.12^zf-Nse|158-173|2.2^Prok-RING_4|170-174|0.27^Rad50_zn_hook|170-173|0.68 CREPT|1-47|2.8e-19 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:3.91Mb] 39 20 39 20 ONLY_REF_SPLICE YES_LDAS 0.5974 GT 1.5219 AG 1.7819 ENST00000217740.4 1-413 ENST00000587563.5 1-150 chr18|+|[0]32018864-32019027[1]|[2]32037116-32037269[2]|[0]32042179-32042273[1]<==>chr18|-|[2]35993151-35993300[0] atgggctccgtgctgagcaccgacagcggcaaatcggcgcccgcctctgccaccgcgcgggccctggagcgcaggagggacccggagttgcccgtcacgtccttcgactgcgccgtgtgccttgaggtgttacaccagcctgtccggacccgctgtggccacgtattctgccgttcctgtattgctaccagtctaaagaacaacaagtggacctgtccttattgccgggcatatcttccttcagaaggagttccagcaactgatgtagccaaaagaatgaaatcagagtataagaactgcgctgagtgtgacaccctggtttgcctcagtgaaatgagggcacatattcggacttgtcagaagtacatagataagtatggaccactacaagaacttgaggagacagcagcaagGAGTACAAGCGCAAGCTAGCCAGAGTTTCCCTGGTGCGCAAAGAACTCAGGTCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCCCAATGTCACTGGCAGCCACATGCACCTGCCCTTTGCGGGAGACATCTACAGTGAAGATTGA MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARSTSAS*PEFPWCAKNSGPGSRACQTYLDCPMSLAATCTCPLRETSTVKI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31772 TPM3::NTRK1 ENSG00000143549.22::ENSG00000198400.14 KM12 SRR8615906 SRR8652076 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3013 TRUE 1142 TPM3 ENSG00000143549.22 protein_coding - - chr1:154155308-154194648:- chr1:154165016:- chr1:154127784-154167124:- chr1:154137492:- NTRK1 ENSG00000198400.14 protein_coding + + chr1:156815636-156881850:+ chr1:156873751:+ chr1:156785428-156851642:+ chr1:156843543:+ NA NA chr1:154165015,chr1:154165015,chr1:154165017 chr1:156873752,chr1:156873763,chr1:156873750 NA NA chr1:154137491,chr1:154137491,chr1:154137493 chr1:156843544,chr1:156843555,chr1:156843542 sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TPM3:Oncogene"];["NTRK1:FoundationOne_panel","NTRK1:ArcherDX_panel","NTRK1:Oncogene"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","HaasMedCancer","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr1:2.62Mb] 32 155 32 30.92 INCL_NON_REF_SPLICE YES_LDAS 0.6371 AC 1.5656 AA 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-190b chr1:154193665-154193743:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN High affinity nerve growth factor receptor TK Trk P04629 TRUE Thyroid,Large_intestine,Brain,Soft_tissue,Skin,Uterus_corpus,Bladder,Uterus_cervix,Lung,Breast,Kidney exact TRUE Sarcoma,Thyroid carcinoma BONE_AND_SOFT_TISSUE,THYROID no_match 154142876|154142876|154142876,154142876 FALSE|FALSE|FALSE,FALSE 156845312|156845872|156846192,156844363 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE tropomyosin 3 1 papillary thyroid, ALCL, NSCLC, Spitzoid tumour epithelial, leukaemia_lymphoma TSG, fusion translocation TRUE neurotrophic tyrosine kinase, receptor, type 1 1 Yes papillary thyroid, Spitzoid tumour epithelial oncogene, TSG, fusion translocation, amplification 31779 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1671 TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767255:+ chr14:70193617-70238722:+ chr14:70233972:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_REARRANGEMENT:+:[11758] 302 137 302 93.4 ONLY_REF_SPLICE YES_LDAS 5.683 GT 1.8323 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31780 SRSF5::SUSD6 ENSG00000100650.16::ENSG00000100647.8 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1672 TRUE 3026 TRUE 1143 SRSF5 ENSG00000100650.16 protein_coding + + chr14:69726900-69772005:+ chr14:69767251:+ chr14:70193617-70238722:+ chr14:70233968:+ SUSD6 ENSG00000100647.8 protein_coding + + chr14:69611596-69715144:+ chr14:69703395:+ chr14:70078313-70181861:+ chr14:70170112:+ chr14:69768111,chr14:69768140,chr14:69768143,chr14:69768145,chr14:69768147,chr14:69768150,chr14:69768155,chr14:69768159,chr14:69768160,chr14:69768164,chr14:69768176,chr14:69768122,chr14:69768127,chr14:69768131,chr14:69768132,chr14:69768134 chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328,chr14:69689328 NA NA chr14:70234828,chr14:70234857,chr14:70234860,chr14:70234862,chr14:70234864,chr14:70234867,chr14:70234872,chr14:70234876,chr14:70234877,chr14:70234881,chr14:70234893,chr14:70234839,chr14:70234844,chr14:70234848,chr14:70234849,chr14:70234851 chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045,chr14:70156045 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_REARRANGEMENT:+:[11758] 141 137 141 43.6 ONLY_REF_SPLICE YES_LDAS 2.6533 GT 1.7465 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31782 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 1673 TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39905985:- chr17:38060848-38076107:- chr17:38062238:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Per1|54-143|3.4e-31^Per1|133-284|3.3e-44 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.21Mb] 29 19 29 16.21 ONLY_REF_SPLICE YES_LDAS 0.6498 GT 1.5656 AG 1.9086 ENST00000429199.6 1-432 ENST00000394175.6 823-1185 chr17|-|[2]39684597-39684749[0]|[2]39685922-39686019[1]|[0]39687834-39688014[0]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0] atggccggcctggcggcgcggttggtcctgctagctggggcagcggcgctggcgagcggctcccagggcgaccgtgagccggtgtaccgcgactgcgtactgcagtgcgaagagcagaactgctctgggggcgctctgaatcacttccgctcccgccagccaatctacatgagtctagcaggctggacctgtcgggacgactgtaagtatgagtgtatgtgggtcaccgttgggctctacctccaggaaggtcacaaagtgcctcagttccatggcaagtggcccttctcccggttcctgttctttcaagagccggcatcggccgtggcctcgtttctcaatggcctggccagcctggtgatgctctgccgctaccgcaccttcgtgccagcctcctcccccatgtaccacacctgtgtggccttcgcctggGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31795 ITCH::RALY ENSG00000078747.17::ENSG00000125970.12 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ITCH ENSG00000078747.17 protein_coding + + chr20:34363235-34511773:+ chr20:34492597:+ chr20:32951041-33099578:+ chr20:33080402:+ RALY ENSG00000125970.12 protein_coding + + chr20:33993646-34108308:+ chr20:34084661:+ chr20:32581452-32696114:+ chr20:32672467:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.25Mb] 6 5 6 5 INCL_NON_REF_SPLICE YES_LDAS 0.1581 GT 1.8892 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-644a chr20:34466325-34466418:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus,Breast inexact TRUE Breast invasive carcinoma,Stomach adenocarcinoma,Skin Cutaneous Melanoma,Uterine Carcinosarcoma BREAST,STOMACH,SKIN,UTERUS inexact 33033266|32981687,33059320,32996598|32981687|32981687|32996598,33028149 FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE 32619328|32659872,32659872,32619328|32619328|32581528|32659872,32619328 FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY CDS-5UTR,CDS-5UTR,CDS-5UTR,CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31796 PGAP3::GSDMB ENSG00000161395.14::ENSG00000073605.19 KLE SRR8615907 SRR8652073 ENDOMETRIUM carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 1674 TRUE 3027 TRUE 1144 PGAP3 ENSG00000161395.14 protein_coding - - chr17:39671122-39696797:- chr17:39684597:- chr17:37827375-37853050:- chr17:37840850:- GSDMB ENSG00000073605.19 protein_coding - - chr17:39904595-39919854:- chr17:39909924:- chr17:38060848-38076107:- chr17:38066177:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Per1|54-143|3.4e-31^Per1|133-284|3.3e-44 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.21Mb] 5 19 5 2.79 ONLY_REF_SPLICE YES_LDAS 0.112 GT 1.5656 AG 1.5628 ENST00000429199.6 1-432 ENST00000418519.6 408-1251 chr17|-|[2]39684597-39684749[0]|[2]39685922-39686019[1]|[0]39687834-39688014[0]<==>chr17|-|[2]39904812-39904964[0]|[2]39905426-39905496[1]|[0]39905847-39905985[0]|[2]39906111-39906271[1]|[0]39906961-39906987[1]|[0]39908176-39908214[1]|[0]39908958-39909042[0]|[2]39909756-39909924[2] atggccggcctggcggcgcggttggtcctgctagctggggcagcggcgctggcgagcggctcccagggcgaccgtgagccggtgtaccgcgactgcgtactgcagtgcgaagagcagaactgctctgggggcgctctgaatcacttccgctcccgccagccaatctacatgagtctagcaggctggacctgtcgggacgactgtaagtatgagtgtatgtgggtcaccgttgggctctacctccaggaaggtcacaaagtgcctcagttccatggcaagtggcccttctcccggttcctgttctttcaagagccggcatcggccgtggcctcgtttctcaatggcctggccagcctggtgatgctctgccgctaccgcaccttcgtgccagcctcctcccccatgtaccacacctgtgtggccttcgcctggGAAGCTGAAGAGGGAACTACCCTTTTCATTCCGATCAATTAATACGAGAGAAAACCTGTATCTGGTGACAGAAACTCTGGAGACGGTAAAGGAGGAAACCCTGAAAAGCGACCGGCAATATAAATTTTGGAGCCAGATCTCTCAGGGCCATCTCAGCTATAAACACAAGGGCCAAAGGGAAGTGACCATCCCCCCAAATCGGGTCCTGAGCTATCGAGTAAAGCAGCTTGTCTTCCCCAACAAGGAGACGATGAATATTCATTTCAGGGGCAAAACAAAATCCTTTCCAGAAGAGAAGGATGGTGCTTCATCCTGTTTAGGAAAGTCTTTGGGTTCGGAGGATTCCAGAAACATGAAGGAGAAGTTGGAGGACATGGAGAGTGTCCTCAAGGACCTGACAGAGGAGAAGAGAAAAGATGTGCTAAACTCCCTCGCTAAGTGCCTCGGCAAGGAGGATATTCGGCAGGATCTAGAGCAAAGAGTATCTGAGGTCCTGATTTCCGGGGAGCTACACATGGAGGACCCAGACAAGCCTCTCCTAAGCAGCCTTTTTAATGCTGCTGGGGTCTTGGTAGAAGCGCGTGCAAAAGCCATTCTGGACTTCCTGGATGCCCTGCTAGAGCTGTCTGAAGAGCAGCAGTTTGTGGCTGAGGCCCTGGAGAAGGGGACCCTTCCTCTGTTGAAGGACCAGGTGAAATCTGTCATGGAGCAGAACTGGGATGAGCTGGCCAGCAGTCCTCCTGACATGGACTATGACCCTGAGGCACGAATTCTCTGTGCGCTGTATGTTGTTGTCTCTATCCTGCTGGAGCTGGCTGAGGGGCCTACCTCTGTCTCTTCCTAA MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLVMLCRYRTFVPASSPMYHTCVAFAWEAEEGTTLFIPIN*YERKPVSGDRNSGDGKGGNPEKRPAI*ILEPDLSGPSQL*TQGPKGSDHPPKSGPELSSKAACLPQQGDDEYSFQGQNKILSRREGWCFILFRKVFGFGGFQKHEGEVGGHGECPQGPDRGEEKRCAKLPR*VPRQGGYSAGSRAKSI*GPDFRGATHGGPRQASPKQPF*CCWGLGRSACKSHSGLPGCPARAV*RAAVCG*GPGEGDPSSVEGPGEICHGAELG*AGQQSS*HGL*P*GTNSLCAVCCCLYPAGAG*GAYLCLFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31802 PHAF1::CBFB ENSG00000125149.12::ENSG00000067955.15 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1678 FALSE NA FALSE NA PHAF1 ENSG00000125149.12 protein_coding + + chr16:67109941-67148544:+ chr16:67144376:+ chr16:67143844-67182447:+ chr16:67178279:+ CBFB ENSG00000067955.15 protein_coding + + chr16:67028984-67101058:+ chr16:67098710:+ chr16:67062887-67134961:+ chr16:67132613:+ chr16:67144763,chr16:67144764 chr16:67095414,chr16:67095412 NA NA chr16:67178666,chr16:67178667 chr16:67129317,chr16:67129315 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PHAF1|15-320|1.4e-135 none ["CBFB:ArcherDX_panel","CBFB:Oncogene","CBFB:FoundationOne_panel"] 66 32 66 32 ONLY_REF_SPLICE YES_LDAS 1.322 GT 1.4295 AG 1.371 ENST00000563853.6 1-962 ENST00000412916.7 496-564 chr16|+|[0]67110176-67110239[0]|[1]67120112-67120194[2]|[0]67125959-67126042[2]|[0]67131286-67131329[1]|[2]67132446-67132525[0]|[1]67132817-67132911[2]|[0]67134168-67134265[1]|[2]67134355-67134467[0]|[1]67139984-67140117[2]|[0]67140511-67140594[2]|[0]67144294-67144376[1]<==>chr16|+|[0]67098710-67098778[2] atgctggacctggaggtagtgcccgaacgctctctggggaacgagcaatgggaattcacgctgggaatgcctctggctcaggcagtagccattcttcagaagcactgtcgcatcatcaaaaacgtccaggttctctacagtgaacagtctcctctaagccatgacctcattcttaacctgactcaggacgggatcaaactaatgtttgatgctttcaatcagagacttaaggtgatcgaagtatgtgatttgactaaagtaaagttaaaatattgtggcgtgcattttaattctcaggccatagctcctaccattgaacagattgaccagtcttttggcgcaacccatcctggagtgtacaactccgctgagcagctcttccatctcaacttcagaggactgtctttctcttttcagttagactcatggactgaggctccaaagtatgagcccaattttgcccatggcctggcttctctccagataccccatggagcaactgtaaaacgaatgtacatctacagtggcaacagcctgcaggataccaaggctcccatgatgcctctgagctgtttcctgggcaatgtctatgctgagagtgtagatgttcttcgagatggaactggacctgcaggtttacgacttcgcctacttgctgcaggttgtggacctggcctattagcagatgccaagatgcgggtatttgaacgttcagtgtattttggtgattcctgccaagatgttcttagcatgcttggctctccacacaaagtcttctataaatcagaagacaagatgaaaattcattctccttcccctcataaacaagttccatcgaagtgtaatgactacttttttaactacttcactcttggagtggacatcctctttgatgcgaatacacacaaagtgaagaagtttgttctacacaccaattaccctgggcattataatttcaacatGCAAGAAGACAACAAGACCCTAGTCCTGGTTCCAATTTAGGTGGTGGTGATGACCTCAAACTTCGTTAA MLDLEVVPERSLGNEQWEFTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKVIEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSFQLDSWTEAPKYEPNFAHGLASLQIPHGATVKRMYIYSGNSLQDTKAPMMPLSCFLGNVYAESVDVLRDGTGPAGLRLRLLAAGCGPGLLADAKMRVFERSVYFGDSCQDVLSMLGSPHKVFYKSEDKMKIHSPSPHKQVPSKCNDYFFNYFTLGVDILFDANTHKVKKFVLHTNYPGHYNFNMQEDNKTLVLVPI*VVVMTSNFV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE core-binding factor, beta subunit 1 Yes AML leukaemia_lymphoma TSG, fusion translocation 31803 SENP6::MYO6 ENSG00000112701.18::ENSG00000196586.17 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SENP6 ENSG00000112701.18 protein_coding + + chr6:75601509-75718281:+ chr6:75670720:+ chr6:76311225-76427997:+ chr6:76380436:+ MYO6 ENSG00000196586.17 protein_coding + + chr6:75749201-75919537:+ chr6:75817501:+ chr6:76458918-76629254:+ chr6:76527218:+ chr6:75672653,chr6:75672654 chr6:75775484,chr6:75775482 NA NA chr6:76382369,chr6:76382370 chr6:76485201,chr6:76485199 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.03Mb];NEIGHBORS[30914] 43 24 43 24 ONLY_REF_SPLICE YES_LDAS 0.9037 GT 1.9086 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31804 PDE3A::SLCO1C1 ENSG00000172572.7::ENSG00000139155.9 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1679 FALSE NA FALSE NA PDE3A ENSG00000172572.7 protein_coding + + chr12:20368537-20688583:+ chr12:20370244:+ chr12:20521471-20841517:+ chr12:20523178:+ SLCO1C1 ENSG00000139155.9 protein_coding + + chr12:20695332-20753386:+ chr12:20740184:+ chr12:20848266-20906320:+ chr12:20893118:+ chr12:20419203,chr12:20419204 chr12:20737921,chr12:20737919 NA NA chr12:20572137,chr12:20572138 chr12:20890855,chr12:20890853 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TgpA_N|64-82|0.65^TgpA_N|128-270|2.9e-07^PDEase_I|751-770|4.7e-05^PDEase_I-PARTIAL|820-960~|2.9e-65 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.01Mb];NEIGHBORS[10974] 27 5 27 5 ONLY_REF_SPLICE YES_LDAS 0.4316 GT 1.7819 AG 1.7819 ENST00000359062.4 1-960 ENST00000545102.1 1195-1839 chr12|+|[0]20369285-20370244[2]<==>chr12|+|[0]20740184-20740368[1]|[2]20743305-20743369[0]|[1]20750675-20750895[2]|[0]20752306-20752479[2] atggcagtgcccggcgacgctgcacgagtcagggacaagcccgtccacagtggggtgagtcaagcccccacggcgggccgggactgccaccatcgtgcggaccccgcatcgccgcgggactcgggctgccgtggctgctggggagacctggtgctgcagccgctccggagctctcggaaactttcctccgcgctgtgcgcgggctccctgtcctttctgctggcgctgctggtgaggctggtccgcggggaggtcggctgtgacctggagcagtgtaaggaggcggcggcggcggaggaggaggaagcagccccgggagcagaagggggcgtcttcccggggcctcggggaggtgctcccgggggcggtgcgcggctcagcccctggctgcagccctcggcgctgctcttcagtctcctgtgtgccttcttctggatgggcttgtacctcctgcgcgccggggtgcgcctgcctctggctgtcgcgctgctggccgcctgctgcgggggggaagcgctcgtccagattgggctgggcgtcggggaggatcacttactctcactccccgccgcgggggtggtgctcagctgcttggccgccgcgacatggctggtgctgaggctgaggctgggcgtcctcatgatcgccttgactagcgcggtcaggaccgtgtccctcatttccttagagaggttcaaggtcgcctggagaccttacctggcgtacctggccggcgtgctggggatcctcttggccaggtacgtggaacaaatcttgccgcagtccgcggaggcggctccaagggagcatttggggtcccagctgattgctgggaccaaggaagatatcccggtgtttaagaggaggaggcggtccagctccgtcgtgtccgccgagatgtccggctgcagcagcaagtcccatcggaggacctccctgccctgtataccgagggaacagATATTTTACAACTGCACTTGTGTGGGAATTGCAGCTTCTAAATCCGGAAATTCCTCAGGCATAGTGGGAAGATGTCAGAAAGACAATGGATGTCCCCAAATGTTTCTGTATTTCCTTGTAATTTCAGTCATCACATCCTATACTTTATCCCTAGGTGGCATACCTGGATACATATTACTTCTGAGGTGCATTAAGCCACAGCTTAAGTCTTTTGCCTTGGGTATCTACACATTAGCAATAAGAGTTCTTGCAGGAATCCCAGCTCCAGTGTATTTTGGAGTTTTGATTGATACTTCATGCCTCAAATGGGGATTTAAAAGATGTGGAAGTAGAGGATCATGCAGATTATATGATTCAAATGTCTTCAGGTACCAAATCAAAAGCATTCCCGCATCTCATTGCTACAGCATCCCAGATTTACACAATGCCACTGACACTAACAAGTTTTCATGTCATTTCACTGCTTGTAAGACATATATATCTGGGACTAACTGTGATACTGGGCACAGTGTCAATTCTCCTAAGCATTGCAGTACTTTTCATTTTAAAGAAAAATTATGTTTCAAAACACAGAAGTTTTATAACCAAGAGAGAAAGAACAATGGTGTCTACAAGATTCCAAAAGGAAAATTACACTACAAGTGA MAVPGDAARVRDKPVHSGVSQAPTAGRDCHHRADPASPRDSGCRGCWGDLVLQPLRSSRKLSSALCAGSLSFLLALLVRLVRGEVGCDLEQCKEAAAAEEEEAAPGAEGGVFPGPRGGAPGGGARLSPWLQPSALLFSLLCAFFWMGLYLLRAGVRLPLAVALLAACCGGEALVQIGLGVGEDHLLSLPAAGVVLSCLAAATWLVLRLRLGVLMIALTSAVRTVSLISLERFKVAWRPYLAYLAGVLGILLARYVEQILPQSAEAAPREHLGSQLIAGTKEDIPVFKRRRRSSSVVSAEMSGCSSKSHRRTSLPCIPREQIFYNCTCVGIAASKSGNSSGIVGRCQKDNGCPQMFLYFLVISVITSYTLSLGGIPGYILLLRCIKPQLKSFALGIYTLAIRVLAGIPAPVYFGVLIDTSCLKWGFKRCGSRGSCRLYDSNVFRYQIKSIPASHCYSIPDLHNATDTNKFSCHFTACKTYISGTNCDTGHSVNSPKHCSTFHFKEKLCFKTQKFYNQERKNNGVYKIPKGKLHYK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31807 SASH1::TRDN ENSG00000111961.19::ENSG00000186439.15 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1680 FALSE NA FALSE NA SASH1 ENSG00000111961.19 protein_coding + + chr6:148272304-148552044:+ chr6:148343223:+ chr6:148593440-148873180:+ chr6:148664359:+ TRDN ENSG00000186439.15 protein_coding - - chr6:123216339-123637189:- chr6:123516206:- chr6:123537484-123958334:- chr6:123837351:- chr6:148368796,chr6:148368797 chr6:123524133,chr6:123524135 NA NA chr6:148689932,chr6:148689933 chr6:123845278,chr6:123845280 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Trypan_PARP|8-38|1.3e-07 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:24.64Mb] 10 4 10 4 ONLY_REF_SPLICE YES_LDAS 0.1889 GT 1.8323 AG 1.5546 ENST00000367467.8 1-156 ENST00000334268.9 485-2190 chr6|+|[0]148343068-148343223[2]<==>chr6|-|[2]123218601-123218740[1]|[0]123221487-123221522[1]|[0]123224093-123224131[1]|[0]123252412-123252435[1]|[0]123255081-123255125[1]|[0]123255867-123255902[1]|[0]123259624-123259662[1]|[0]123260612-123260638[1]|[0]123265318-123265338[1]|[0]123267707-123267751[1]|[0]123269849-123269866[1]|[0]123271139-123271186[1]|[0]123272964-123273011[1]|[0]123273337-123273363[1]|[0]123274641-123274670[1]|[0]123278318-123278347[1]|[0]123279056-123279082[1]|[0]123316457-123316495[1]|[0]123331879-123331929[1]|[0]123337619-123337669[1]|[0]123352539-123352586[1]|[0]123366135-123366182[1]|[0]123375605-123375631[1]|[0]123377716-123377742[1]|[0]123377866-123377898[1]|[0]123381370-123381390[1]|[0]123382118-123382147[1]|[0]123388522-123388551[1]|[0]123393624-123393677[1]|[0]123438063-123438122[1]|[0]123438944-123439003[1]|[0]123464906-123464983[1]|[0]123497193-123497252[1]|[0]123503719-123503901[1]|[0]123512303-123512362[1]|[0]123516141-123516206[1] atggaggacgcgggagcagctggcccggggccggagcctgagcccgagcccgagccggagcccgagcccgcgccggagccggaaccggagcccaagccgggtgctggcacatccgaggcgttctcccgactctggaccgacgtgatgggtatcctgTTACACACAAAGAAAAAGAAAAAGGAAAAGAAAAAGTAAGAGAAAAAGAAAAACCTGAAAAGAAAGCAACTCACAAGGAAAAAATTGAGAAAAAAGAAAAACCAGAAACAAAGACACTGGCGAAAGAACAGAAGAAAGCTAAGACTGCAGAAAAGAGTGAAGAAAAGACTAAAAAGGAAGTGAAAGGTGGAAAACAGGAGAAAGTGAAGCAAACAGCTGCAAAAGTAAAAGAAGTACAGAAAACACCATCAAAACCCAAAGAAAAGGAGGACAAAGAGAAAGCAGCTGTGTCAAAGCATGAACAGAAAGATCAGTATGCATTCTGTCGATATATGATTGACATATTTGTCCATGGGGATTTAAAACCAGGACAAAGCCCAGCCATTCCACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTCCGGCATCACCTGCCCTTGAAGAAAAAGAAGGGGAAAAGAAGAAGGCTGAGAAGAAAGTTACTTCTGAAACAAAAAAGAAAGAAAAAGAAGATATCAAAAAGAAAAGTGAGAAGGAAACTGCCATTGATGTGGAAAAAAAAGAGCCGGGAAAAGCTTCTGAAACCAAACAAGGGACTGTAAAAATTGCAGCACAAGCAGCAGCTAAGAAGGATGAAAAGAAGGAAGATTCCAAGAAAACAAAAAAACCTGCAGAAGTAGAACAACCCAAGGGAAAAAAACAGGAAAAGAAAGAAAAACATGTGGAACCAGCAAAGTCACCAAAGAAAGAACACTCAGTTCCAAGTGACAAACAAGTAAAAGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTGCGGTTTCAATTAAAAAAGCTGTACCTGGAAAGAAGGAAGAGAAAACAACCAAGACAGTGGAGCAAGAAATTAGAAAAGAAAAATCTGGGAAGACTTCTTCAATTCTGAAAGATAAAGAACCTATTAAAGGGAAAGAAGAGAAAGTTCCAGCTTCCCTAAAGGAAAAAGAACCTGAAACTAAAAAAGATGAAAAGATGTCCAAAGCAGGCAAAGAAGTCAAGCCTAAACCTCCACAACTACAAGGAAAAAAGGAAGAGAAGCCAGAGCCCCAAATTAAAAAAGAAGCAAAACCAGCTATATCTGAAAAAGTGCAAATACACAAACAAGACATAGTGAAACCAGAAAAGACTGTTTCTCATGGTAAACCAGAAGAAAAAGTTCTCAAGCAGGTAAAAGCTGTCACAATAGAAAAAACAGCCAAGCCCAAACCAACAAAAAAAGCTGAACATCGAGAAAGAGAACCTCCATCTATAAAAACAGACAAACCAAAACCAACTCCAAAAGGAACATCAGAAGTCACAGAATCAGGAAAGAAGAAAACTGAAATATCTGAAAAAGAAAGTAAAGAAAAAGCAGACATGAAGCATCTTAGAGAAGAAAAAGTCTCAACAAGAAAAGAAAGTCTTCAATTACACAATGTGACAAAAGCAGAAAAACCTGCAAGAGTATCAAAAGATGTTGAAGATGTACCAGCTTCAAAGAAAGCTAAAGAAGGAACTGAAGATGTGTCTCCCACAAAGCAGAAAAGTCCCATCAGTTTCTTCCAGTGTGTCTACTTGGATGGGTACAATGGCTATGGATTTCAGTTTCCTTTCACTCCTGCAGACCGCCCTGGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGACAGAAGCAACAAGGACAGTAA MEDAGAAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAFSRLWTDVMGILLHTKKKKKEKKK*EKKKNLKRKQLTRKKLRKKKNQKQRHWRKNRRKLRLQKRVKKRLKRK*KVENRRK*SKQLQK*KKYRKHHQNPKKRRTKRKQLCQSMNRKISMHSVDI*LTYLSMGI*NQDKAQPFHLPYRQNKLPDPLRHHLPLKKKKGKRRRLRRKLLLKQKRKKKKISKRKVRRKLPLMWKKKSREKLLKPNKGL*KLQHKQQLRRMKRRKIPRKQKNLQK*NNPREKNRKRKKNMWNQQSHQRKNTQFQVTNK*KQKLNEPKRRLVRFQLKKLYLERRKRKQPRQWSKKLEKKNLGRLLQF*KIKNLLKGKKRKFQLP*RKKNLKLKKMKRCPKQAKKSSLNLHNYKEKRKRSQSPKLKKKQNQLYLKKCKYTNKT**NQKRLFLMVNQKKKFSSR*KLSQ*KKQPSPNQQKKLNIEKENLHL*KQTNQNQLQKEHQKSQNQERRKLKYLKKKVKKKQT*SILEKKKSQQEKKVFNYTM*QKQKNLQEYQKMLKMYQLQRKLKKELKMCLPQSRKVPSVSSSVSTWMGTMAMDFSFLSLLQTALERALVKQILQDRSNKDS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31817 DEPDC1B::PDE4D ENSG00000035499.13::ENSG00000113448.21 JHH7 SRR8615914 SRR8652065 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1681 FALSE NA FALSE NA DEPDC1B ENSG00000035499.13 protein_coding - - chr5:60596912-60700190:- chr5:60638750:- chr5:59892739-59996017:- chr5:59934577:- PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59988717:- chr5:58264865-59817947:- chr5:59284544:- chr5:60618983,chr5:60618985 chr5:60044260,chr5:60044260 NA NA chr5:59914810,chr5:59914812 chr5:59340087,chr5:59340087 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DEP|28-106|6.3e-23^RhoGAP|69-81|0.52^RhoGAP|270-342|6.6e-12^DEP|378-398|0.11 PDE4_UCR|162-278|3.8e-64^PDEase_I|255-319|0.12^PDEase_I|400-639|5.5e-99 ["PDE4D:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.07Mb];NEIGHBORS[74792] 3 6 3 5.89 ONLY_REF_SPLICE YES_LDAS 0.12 GT 1.8323 AG 1.9329 ENST00000453022.6 1-898 ENST00000502484.6 43-2247 chr5|-|[0]60638750-60638890[1]|[0]60642812-60642859[1]|[0]60644745-60644875[2]|[1]60645492-60645619[0]|[2]60647398-60647533[2]|[1]60686962-60687227[0]|[2]60700046-60700093[0]<==>chr5|-|[2]58974664-58975080[0]|[2]58975657-58975839[0]|[2]58976350-58976472[0]|[2]58977191-58977345[1]|[0]58988493-58988592[0]|[2]58989755-58989919[0]|[2]58990804-58990902[0]|[2]58991832-58992004[1]|[0]58993372-58993465[0]|[2]59038859-59038971[1]|[0]59180595-59180644[2]|[1]59185189-59185262[0]|[2]59193500-59193536[2]|[1]59215777-59215968[2]|[1]59988488-59988717[0] atggagcatcgcatcgtggggcccgggccgtaccgagctaccaggctgtggaatgagaccgtggagctttttcgtgctaagatgccgttacggaaacatcgctgtcgtttcaagagctatgagcattgtttcacagcggccgaagctgtggattggctgcatgagctgctgaggtgcagtcaaaacttcggccctgaagtgacccgcaaacaaacggtccagctgctaaaaaaattcctgaagaatcacgttattgaagacatcaagggaaaatggggtgaggaagattttgaagacaatcgtcacttatacagatttcctccttcttcacccctgaaaccatatccaaagaagcccccaaaccaaaaggatgttattaaatttccagaatggaatgatctcccaccaggcacttcacaagagaacatcccagtgaggccagttgtgatgaattctgagatgtggtacaagcgtcacagtattgcaattggagaggtgccagcttgccgtcttgtccaccgcagacagctgacagaggccaatgtagaagagatatggaagtctatgacattatcatacttacagaaaattcttggcctggattccttagaagaagttttagacgtcaaacttgtcaattcgaagttcatcatccataatgtatatagtgttagcaagcagggagttgttattcttgatgacaagtcaaaagaacttcctcattgggtgctgtcagctatgaagtgtttggcaaattggcccaactgttctgatttgaagcagcctatgtacttgggatttgaaaaagatgtctttaaaaccatagctgattactatggtcacttgaaagagcctctacttacatttcatctttttgatgcttttgtcagtgtactggGCCTCTGAGGAAACACTACATTCCAGTAATGAAGAGGAAGACCCTTTCCGCGGAATGGAACCCTATCTTGTCCGGAGACTTTCATGTCGCAATATTCAGCTTCCCCCTCTCGCCTTCAGACAGTTGGAACAAGCTGACTTGAAAAGTGAATCAGAGAACATTCAACGACCAACCAGCCTCCCCCTGAAGATTCTGCCGCTGATTGCTATCACTTCTGCAGAATCCAGTGGTTTTGATGTGGACAATGGCACATCTGCGGGACGGAGTCCCTTGGATCCCATGACCAGCCCAGGATCCGGGCTAATTCTCCAAGCAAATTTTGTCCACAGTCAACGACGGGAGTCCTTCCTGTATCGATCCGACAGCGATTATGACCTCTCTCCAAAGTCTATGTCCCGGAACTCCTCCATTGCCAGTGATATACACGGAGATGACTTGATTGTGACTCCATTTGCTCAGGTCTTGGCCAGTCTGCGAACTGTACGAAACAACTTTGCTGCATTAACTAATTTGCAAGATCGAGCACCTAGCAAAAGATCACCCATGTGCAACCAACCATCCATCAACAAAGCCACCATAACAGAGGAGGCCTACCAGAAACTGGCCAGCGAGACCCTGGAGGAGCTGGACTGGTGTCTGGACCAGCTAGAGACCCTACAGACCAGGCACTCCGTCAGTGAGATGGCCTCCAACAAGTTTAAAAGGATGCTTAATCGGGAGCTCACCCATCTCTCTGAAATGAGTCGGTCTGGAAATCAAGTGTCAGAGTTTATATCAAACACATTCTTAGATAAGCAACATGAAGTGGAAATTCCTTCTCCAACTCAGAAGGAAAAGGAGAAAAAGAAAAGACCAATGTCTCAGATCAGTGGAGTCAAGAAATTGATGCACAGCTCTAGTCTGACTAATTCAAGTATCCCAAGGTTTGGAGTTAAAACTGAACAAGAAGATGTCCTTGCCAAGGAACTAGAAGATGTGAACAAATGGGGTCTTCATGTTTTCAGAATAGCAGAGTTGTCTGGTAACCGGCCCTTGACTGTTATCATGCACACCATTTTTCAGGAACGGGATTTATTAAAAACATTTAAAATTCCAGTAGATACTTTAATTACATATCTTATGACTCTCGAAGACCATTACCATGCTGATGTGGCCTATCACAACAATATCCATGCTGCAGATGTTGTCCAGTCTACTCATGTGCTATTATCTACACCTGCTTTGGAGGCTGTGTTTACAGATTTGGAGATTCTTGCAGCAATTTTTGCCAGTGCAATACATGATGTAGATCATCCTGGTGTGTCCAATCAATTTCTGATCAATACAAACTCTGAACTTGCCTTGATGTACAATGATTCCTCAGTCTTAGAGAACCATCATTTGGCTGTGGGCTTTAAATTGCTTCAGGAAGAAAACTGTGACATTTTCCAGAATTTGACCAAAAAACAAAGACAATCTTTAAGGAAAATGGTCATTGACATCGTACTTGCAACAGATATGTCAAAACACATGAATCTACTGGCTGATTTGAAGACTATGGTTGAAACTAAGAAAGTGACAAGCTCTGGAGTTCTTCTTCTTGATAATTATTCCGATAGGATTCAGGTTCTTCAGAATATGGTGCACTGTGCAGATCTGAGCAACCCAACAAAGCCTCTCCAGCTGTACCGCCAGTGGACGGACCGGATAATGGAGGAGTTCTTCCGCCAAGGAGACCGAGAGAGGGAACGTGGCATGGAGATAAGCCCCATGTGTGACAAGCACAATGCTTCCGTGGAAAAATCACAGGTGGGCTTCATAGACTATATTGTTCATCCCCTCTGGGAGACATGGGCAGACCTCGTCCACCCTGACGCCCAGGATATTTTGGACACTTTGGAGGACAATCGTGAATGGTACCAGAGCACAATCCCTCAGAGCCCCTCTCCTGCACCTGATGACCCAGAGGAGGGCCGGCAGGGTCAAACTGAGAAATTCCAGTTTGAACTAACTTTAGAGGAAGATGGTGAGTCAGACACGGAAAAGGACAGTGGCAGTCAAGTGGAAGAAGACACTAGCTGCAGTGACTCCAAGACTCTTTGTACTCAAGACTCAGAGTCTACTGAAATTCCCCTTGATGAACAGGTTGAAGAGGAGGCAGTAGGGGAAGAAGAGGAAAGCCAGCCTGAAGCCTGTGTCATAGATGATCGTTCTCCTGACACGTAA MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGL*GNTTFQ**RGRPFPRNGTLSCPETFMSQYSASPSRLQTVGTS*LEK*IREHSTTNQPPPEDSAADCYHFCRIQWF*CGQWHICGTESLGSHDQPRIRANSPSKFCPQSTTGVLPVSIRQRL*PLSKVYVPELLHCQ*YTRR*LDCDSICSGLGQSANCTKQLCCIN*FARSST*QKITHVQPTIHQQSHHNRGGLPETGQRDPGGAGLVSGPARDPTDQALRQ*DGLQQV*KDA*SGAHPSL*NESVWKSSVRVYIKHILR*AT*SGNSFSNSEGKGEKEKTNVSDQWSQEIDAQL*SD*FKYPKVWS*N*TRRCPCQGTRRCEQMGSSCFQNSRVVW*PALDCYHAHHFSGTGFIKNI*NSSRYFNYISYDSRRPLPC*CGLSQQYPCCRCCPVYSCAIIYTCFGGCVYRFGDSCSNFCQCNT*CRSSWCVQSISDQYKL*TCLDVQ*FLSLREPSFGCGL*IASGRKL*HFPEFDQKTKTIFKENGH*HRTCNRYVKTHESTG*FEDYG*N*ESDKLWSSSS**LFR*DSGSSEYGALCRSEQPNKASPAVPPVDGPDNGGVLPPRRPREGTWHGDKPHV*QAQCFRGKITGGLHRLYCSSPLGDMGRPRPP*RPGYFGHFGGQS*MVPEHNPSEPLSCT**PRGGPAGSN*EIPV*TNFRGRW*VRHGKGQWQSSGRRH*LQ*LQDSLYSRLRVY*NSP**TG*RGGSRGRRGKPA*SLCHR*SFS*HV FALSE FALSE NA NA TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31819 EEIG1::CIZ1 ENSG00000167106.12::ENSG00000148337.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1687 FALSE NA FALSE NA EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127979992:- chr9:130702861-130743268:- chr9:130742271:- CIZ1 ENSG00000148337.22 protein_coding - - chr9:128161251-128204383:- chr9:128190862:- chr9:130923530-130966662:- chr9:130953141:- chr9:127966211,chr9:127966213 chr9:128195821,chr9:128195820 NA NA chr9:130728490,chr9:130728492 chr9:130958100,chr9:130958099 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NT-C2-PARTIAL|6-146~|1.8e-36 zf-C2H2_jaz|622-647|1e-05^zf-C2H2_2|622-650|3.9e-05^zf-met|623-642|2.9e-05^zf-C2H2_4|623-642|0.00017^zf-C2H2|623-643|0.0011^zf-met|685-693|0.28^zf-C2H2_4|686-703|3.7^zf-C2H2|694-706|0.59^zf-C2H2_jaz|697-707|0.93^zf-C2H2_2|731-779|8.5e-06^zf-C2H2_jaz|742-766|1.4e-10^zf-met|742-763|0.00061^zf-C2H2_4|743-762|8.2e-05^zf-C2H2|743-765|0.00045^zf-C2H2_jaz|855-880|0.31^zf-C2H2_2|855-884|0.07^zf-met|855-863|0.1^zf-C2H2_4|855-876|0.035^zf-C2H2|855-868|0.022 none 65 36 65 36 ONLY_REF_SPLICE YES_LDAS 1.0927 GT 1.9899 AG 1.8295 ENST00000373095.6 1-146 ENST00000538431.5 86-2865 chr9|-|[1]127979992-127980137[0]<==>chr9|-|[2]128166197-128166406[0]|[2]128166759-128166880[1]|[0]128167095-128167164[0]|[2]128169052-128169201[0]|[2]128169406-128169519[0]|[2]128169623-128169700[0]|[2]128170020-128170107[2]|[1]128176351-128176475[0]|[2]128177566-128177763[0]|[2]128178369-128178490[1]|[0]128178709-128179415[2]|[1]128180415-128180523[1]|[0]128180721-128180814[0]|[2]128185547-128185776[1]|[0]128187863-128187934[1]|[0]128190329-128190444[2]|[1]128190688-128190862[1] atggctttcttgatgaagaagaagaaattcaaattccaaactactttcaccctggaggagctgactgcggttcccttcgtgaacggggtcctcttctgcaaggtccggctgctggatggaggggattttgtcagcttgtcgtcaagCCACCATGTTCAGCCAGCAGCAGCAGCAGCAGCTCCAGCAACAGCAGCAGCAGCTCCAGCAGTTACAGCAGCAGCAGCTCCAGCAGCAGCAATTGCAGCAGCAGCAGTTACTGCAGCTCCAGCAGCTGCTCCAGCAGTCCCCACCACAGGCCCCGTTGCCCATGGCTGTCAGCCGGGGGCTCCCCCCGCAGCAGCCACAGCAGCCGCTTCTGAATCTCCAGGGCACCAACTCAGCCTCCCTCCTCAACGGCTCCATGCTGCAGAGAGCTTTGCTTTTACAGCAGTTGCAAGGACTGGACCAGTTTGCAATGCCACCAGCCACGTATGACACTGCCGGTCTCACCATGCCCACAGCAACACTGGGTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACCCCCAATCGAAAGGATTCTTCTTCTCAGACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAGACCAAGATTTACCGCCCTGCCCAGAGGACATCGCCAAGGAAAAACGCACTCCAGCACCTGAGCCTGAGCCTTGTGAGGCGTCCGAGCTGCCAGCAAAGAGATTGAGGAGCTCAGAAGAGCCCACAGAGAAGGAACCTCCAGGGCAGTTACAGGTGAAGGCCCAGCCGCAGGCCCGGATGACAGTACCGAAACAGACACAGACACCAGACCTGCTGCCTGAGGCCCTGGAAGCCCAAGTGCTGCCACGATTCCAGCCACGGGTCCTGCAGGTCCAGGCCCAGGTGCAGTCACAGACTCAGCCGCGGATACCATCCACAGACACCCAGGTGCAGCCAAAGCTGCAGAAGCAGGCGCAAACACAGACCTCTCCAGAGCACTTAGTGCTGCAACAGAAGCAGGTGCAGCCACAGCTGCAGCAGGAGGCAGAGCCACAGAAGCAGGTGCAGCCACAGGTACAGCCACAGGCACATTCACAGGGCCCAAGGCAGGTGCAGCTGCAGCAGGAGGCAGAGCCGCTGAAGCAGGTGCAGCCACAGGTGCAGCCCCAGGCACATTCACAGCCCCCAAGGCAGGTGCAGCTGCAGCTGCAGAAGCAGGTCCAGACACAGACATATCCACAGGTCCACACACAGGCACAGCCAAGCGTCCAGCCACAGGAGCATCCTCCAGCGCAGGTGTCAGTACAGCCACCAGAGCAGACCCATGAGCAGCCTCACACCCAGCCGCAGGTGTCGTTGCTGGCTCCAGAGCAAACACCAGTTGTGGTTCATGTCTGCGGGCTGGAGATGCCACCTGATGCAGTAGAAGCTGGTGGAGGCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGGGTATGGGGCGCCGGGGGCTCCCTGAAGGTCACCATTCTGCAGAGCAGTGACAGCCGGGCCTTTAGCACTGTACCCCTGACACCTGTCCCCCGCCCCAGTGACTCCGTCTCCTCCACCCCTGCGGCTACCAGCACTCCCTCTAAGCAGGCCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCTCCAGCCAGCAGGAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGAGGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAGCCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAGCTGAAGTCGCTTGAGAAAGAAATTGCTGGCCAAGATGAGGACCACTTCATTACAGTGGACGCTGTGGGTTGCTTCGAGGGTGATGAAGAAGAGGAAGAGGATGATGAGGATGAAGAAGAGATCGAGGTTGAGGAGGAACTCTGCAAGCAGGTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATGGTGTGGACTTCCTGGTGCCCGTGATGGGCTATATCTGCCGCATCTGCCACAAGTTCTATCACAGCAACTCAGGGGCACAGCTCTCCCACTGCAAGTCCCTGGGCCACTTTGAGAACCTGCAGAAATACAAGGCGGCCAAGAACCCCAGCCCCACCACCCGACCTGTGAGCCGCCGGTGCGCAATCAACGCCCGGAACGCTTTGACAGCCCTGTTCACCTCCAGCGGCCGCCCACCCTCCCAGCCCAACACCCAGGACAAAACACCCAGCAAGGTGACGGCTCGACCCTCCCAGCCCCCACTACCTCGGCGCTCAACCCGCCTCAAAACCTGA MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSSHHVQPAAAAAAPATAAAAPAVTAAAAPAAAIAAAAVTAAPAAAPAVPTTGPVAHGCQPGAPPAAATAAASESPGHQLSLPPQRLHAAESFAFTAVARTGPVCNATSHV*HCRSHHAHSNTG*PPRLWHGIPRPRSPQPHTPTTGHSKFATVLSPGHSPVLAGTSSCWGPHEPFPVQPFRTEPPETGPDLLLYHPQSKGFFFSDNACGRQVRPPRGV*GSRRAPDGHTRRPRFTALPRGHRQGKTHSST*A*AL*GVRAASKEIEELRRAHREGTSRAVTGEGPAAGPDDSTETDTDTRPAA*GPGSPSAATIPATGPAGPGPGAVTDSAADTIHRHPGAAKAAEAGANTDLSRALSAATEAGAATAAAGGRATEAGAATGTATGTFTGPKAGAAAAGGRAAEAGAATGAAPGTFTAPKAGAAAAAEAGPDTDISTGPHTGTAKRPATGASSSAGVSTATRADP*AASHPAAGVVAGSRANTSCGSCLRAGDAT*CSRSWWRHGKDLARACGHPSQHGRDSE*VGLWPRCGRM*KQSERDARGMGRRGLPEGHHSAEQ*QPGL*HCTPDTCPPPQ*LRLLHPCGYQHSL*AGPPVLLLHLQGQLLQPAGVPGPHVGASAPAAARGDPAHEPSLPPVPAARAPGRPGDRG*GASTKALVQHLPALLHGGPDPTPQDTGPQATHTTKRCVCPRSSAGVEHSPACYRYDCQTILATLLHRLQPLLQNPSQVCGAREVPGA*GQSQGAEVA*ERNCWPR*GPLHYSGRCGLLRG**RRGRG**G*RRDRG*GGTLQAGEVQRYIQRGVEGLGDLQPQYCIWCGLPGARDGLYLPHLPQVLSQQLRGTALPLQVPGPL*EPAEIQGGQEPQPHHPTCEPPVRNQRPERFDSPVHLQRPPTLPAQHPGQNTQQGDGSTLPAPTTSALNPPQNL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31821 SLC35E2B::KIAA2013 ENSG00000189339.12::ENSG00000116685.17 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1683 TRUE 3058 TRUE 1154 SLC35E2B ENSG00000189339.12 protein_coding - - chr1:1659529-1692795:- chr1:1692449:- chr1:1590990-1624234:- chr1:1623888:- KIAA2013 ENSG00000116685.17 protein_coding - - chr1:11919591-11926428:- chr1:11923489:- chr1:11979648-11986485:- chr1:11983546:- chr1:1682156,chr1:1682161,chr1:1682164 chr1:11925218,chr1:11925220,chr1:11925223 NA NA chr1:1613595,chr1:1613600,chr1:1613603 chr1:11985275,chr1:11985277,chr1:11985280 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr1:10.23Mb] 44 30 44 20.62 ONLY_REF_SPLICE YES_LDAS 0.6991 GT 1.9329 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31823 DUS1L::CCDC57 ENSG00000169718.18::ENSG00000176155.21 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1685 FALSE NA FALSE NA DUS1L ENSG00000169718.18 protein_coding - - chr17:82057506-82065887:- chr17:82062861:- chr17:80015382-80023763:- chr17:80020737:- CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82101866:- chr17:80059336-80170754:- chr17:80059742:- chr17:82062293,chr17:82062296 chr17:82108688,chr17:82108688 NA NA chr17:80020169,chr17:80020172 chr17:80066564,chr17:80066564 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Dus|21-293|1.2e-77^DHO_dh|87-172|9.2e-05^NMO|157-229|0.00014^FMN_dh|177-230|0.0001^His_biosynth|181-232|2.2e-05^TMP-TENI|188-229|0.00012^VASP_tetra|286-309|8.9e-05^DUF702|365-376|7.9^Ribosomal_S14|391-421|7.3e-06^DUF702|393-429|5.3e-05 none ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.04Mb];LOCAL_REARRANGEMENT:-:[35573] 43 21 43 21 ONLY_REF_SPLICE YES_LDAS 0.6924 GT 1.7819 AG 1.7232 ENST00000354321.11 1-510 ENST00000665763.1 2900-3084 chr17|-|[2]82062861-82062973[1]|[0]82063468-82063518[1]|[0]82064126-82064234[0]|[2]82064823-82065059[0]<==>chr17|-|[2]82101682-82101866[1] atgccaaagctgcagggcttcgagttctggagccgcaccctgcgaggggcccgccacgtcgtggcccccatggtggaccagagcgagctggcctggaggctgctgagccggcgccacggggcacagctctgctacacgcccatgctgcatgcccaggtctttgtccgcgacgccaactaccggaaggagaacctgtactgcgaggtgtgccccgaggaccggcccctcatcgtgcagttctgtgccaatgacccggaggtgtttgttcaggcggctctcctggctcaggattactgtgacgccattgacctgaacttgggctgcccacagatgatagccaagagaggtcactatggcgcctttctgcaggacgagtgggacctgctccaaagaatgattttgctggcccacgagaaactctctgttcctgtcacgtgcaaaatccgtgtcttcccggagattgacaagaccgtgaggtacgcccagatgctggagaaggccggctgccagAGCTCCCAGCTCCTCCAGCAGCCGACAGGAGGCCCGTCAAGATGCAGGCAGGCATTGCCACCCCAGGGATGAAGACAGCAGCCCAGGCAAAGGCCAAGACCACAGGAGCCTCCCGGTCTCATCCTGCAAAAGCTAAAGGCTGCCAGAGGCCCCCCAAGATCCGTAACTACAACATTATGGACTGA MPKLQGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQSSQLLQQPTGGPSRCRQALPPQG*RQQPRQRPRPQEPPGLILQKLKAARGPPRSVTTTLWT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver,Nasopharynx no_match TRUE Liver hepatocellular carcinoma LIVER no_match 80023489|80023489 FALSE|FALSE 80092070|80086473 FALSE|FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31824 STK24::DOCK9 ENSG00000102572.15::ENSG00000088387.22 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1688 FALSE NA FALSE NA STK24 ENSG00000102572.15 protein_coding - - chr13:98445185-98577940:- chr13:98576745:- chr13:99097439-99230194:- chr13:99228999:- DOCK9 ENSG00000088387.22 protein_coding - - chr13:98793429-99086625:- chr13:98810291:- chr13:99445683-99738879:- chr13:99462545:- chr13:98541307,chr13:98541309 chr13:98813494,chr13:98813493 NA NA chr13:99193561,chr13:99193563 chr13:99465748,chr13:99465747 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ABC1-PARTIAL|14-42~|0.00048^Haspin_kinase-PARTIAL|21-42~|0.0012^Pkinase-PARTIAL|24-42~|1.4e-62^Kinase-like-PARTIAL|24-42~|0.41^PK_Tyr_Ser-Thr-PARTIAL|26-42~|1.7e-12 none ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.22Mb] 32 2 32 2 ONLY_REF_SPLICE YES_LDAS 0.3678 GT 1.8323 AG 1.7465 ENST00000397517.6 1-42 ENST00000703216.1 4849-6033 chr13|-|[2]98576745-98576786[0]<==>chr13|-|[2]98794626-98794748[0]|[2]98797115-98797253[2]|[1]98797389-98797489[0]|[2]98800288-98800478[1]|[0]98804999-98805209[0]|[2]98807661-98807807[0]|[2]98808640-98808675[0]|[2]98809352-98809465[0]|[2]98810169-98810291[0] atggctcactccccggtgcagtcgggcctgcccggcatgcagGATGTGCTGATGGAGCTCCTTGAGCAGTGCGCAGATGGACTCTGGAAAGCCGAGCGCTACGAGCTCATCGCCGACATCTACAAACTTATCATCCCCATTTATGAGAAGCGGAGGGATTTTGAGAGGCTGGCCCATCTGTATGACACGCTGCACCGGGCCTACAGCAAAGTGACCGAGGTCATGCACTCGGGCCGCAGGCTTCTGGGGACCTACTTCCGGGTAGCCTTCTTCGGGCAGCAATACCAGTTTACAGACAGTGAAACAGATGTGGAGGGATTCTTTGAAGATGAAGATGGAAAGGAGTATATTTACAAGGAACCCAAACTCACACCGCTGTCGGAAATTTCTCAGAGACTCCTTAAACTGTACTCGGATAAATTTGGTTCTGAAAATGTCAAAATGATACAGGATTCTGGCAAGGTCAACCCTAAGGATCTGGATTCTAAGTATGCATACATCCAGGTGACTCACGTCATCCCCTTCTTTGACGAAAAAGAGTTGCAAGAAAGGAAAACAGAGTTTGAGAGATCCCACAACATCCGCCGCTTCATGTTTGAGATGCCATTTACGCAGACCGGGAAGAGGCAGGGCGGGGTGGAAGAGCAGTGCAAACGGCGCACCATCCTGACAGCCATACACTGCTTCCCTTATGTGAAGAAGCGCATCCCTGTCATGTACCAGCACCACACTGACCTGAACCCCATCGAGGTGGCCATTGACGAGATGAGTAAGAAGGTGGCGGAGCTCCGGCAGCTGTGCTCCTCGGCCGAGGTGGACATGATCAAACTGCAGCTCAAACTCCAGGGCAGCGTGAGTGTTCAGGTCAATGCTGGCCCACTAGCATATGCGCGAGCTTTCTTAGATGATACAAACACAAAGCGATATCCTGACAATAAAGTGAAGCTGCTTAAGGAAGTTTTCAGGCAATTTGTGGAAGCTTGCGGTCAAGCCTTAGCGGTAAACGAACGTCTGATTAAAGAAGACCAGCTCGAGTATCAGGAAGAAATGAAAGCCAACTACAGGGAAATGGCGAAGGAGCTTTCTGAAATCATGCATGAGCAGATCTGCCCCCTGGAGGAGAAGACGAGCGTCTTACCGAATTCCCTTCACATCTTCAACGCCATCAGTGGGACTCCAACAAGCACAATGGTTCACGGGATGACCAGCTCGTCTTCGGTCGTGTGA MAHSPVQSGLPGMQDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQQYQFTDSETDVEGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKYAYIQVTHVIPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSEIMHEQICPLEEKTSVLPNSLHIFNAISGTPTSTMVHGMTSSSSVV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase 24 STE STE20 YSK Q9Y6E0 FALSE NA NA NA NA NA NA TRUE Stomach,Liver,Breast no_match TRUE Liver hepatocellular carcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma LIVER,STOMACH,STOMACH no_match 99228999,99228999,99171497|99171497 TRUE,TRUE,FALSE|FALSE 99462545,99449507,99532926|99520631 TRUE,FALSE,FALSE|FALSE YES,YES,PARTIALLY In-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31825 THEM6::FANCI ENSG00000130193.8::ENSG00000140525.20 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1686 FALSE NA FALSE NA THEM6 ENSG00000130193.8 protein_coding + + chr8:142727223-142736927:+ chr8:142727859:+ chr8:143808641-143818345:+ chr8:143809277:+ FANCI ENSG00000140525.20 protein_coding + + chr15:89243945-89317261:+ chr15:89301326:+ chr15:89787176-89860492:+ chr15:89844557:+ chr8:142728529,chr8:142728529,chr8:142728529 chr15:89300466,chr15:89300472,chr15:89300463 NA NA chr8:143809947,chr8:143809947,chr8:143809947 chr15:89843697,chr15:89843703,chr15:89843694 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame 4HBT_2|54-185|6.3e-31^Acyl-ACP_TE_C|55-71|7.4e-06 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr15] 31 14 31 14 ONLY_REF_SPLICE YES_LDAS 0.4869 GT 1.8323 AG 1.8892 ENST00000336138.4 1-513 ENST00000674831.1 2890-4119 chr8|+|[0]142727347-142727859[2]<==>chr15|+|[0]89301326-89301442[2]|[0]89303864-89303915[0]|[1]89305115-89305242[2]|[0]89305341-89305409[2]|[0]89305605-89305698[0]|[1]89306007-89306194[2]|[0]89307476-89307529[2]|[0]89307613-89307672[2]|[0]89311647-89311778[2]|[0]89312904-89312972[2]|[0]89314612-89314707[2]|[0]89315282-89315389[2]|[0]89316397-89316459[2] atgctggggctgctggtggcgttgctggccctggggctcgctgtctttgcgctgctggacgtctggtacctggtgcgccttccgtgcgccgtgctgcgcgcgcgcctgctgcagccgcgcgtccgtgacctgctagctgagcagcgcttcccgggccgcgtgctgccctcggacttggacctgctgctgcacatgaacaacgcgcgctacctgcgcgaggccgactttgcgcgcgtcgcgcacctgacccgctgcggggtgctcggggcgctgagggagttgcgggcgcacacggtgctggcggcctcgtgcgcgcgccaccgccgctcgctgcgcctgctggagcccttcgaggtgcgcacccgcctgctgggctgggacgaccgcgcgttctacctggaggcgcgctttgtcagcctgcgggacggcttcgtgtgcgcgctgctgcgcttccggcagcacctgctgggcacctcacccgagcgcgtcgtgcagcacctgtgccagcgcaggAGGTCCTTGTTGAATTTACTTAGCAGTCAAGAGGAAGATTTTAATAGCAAAGAAGCCCTCCTGCTAGTCACGGTTCTTACCAGTTTGTCCAAGTTACTGGAGCCCTCCTCTCCTCAGTTTGTGCAGATGTTATCCTGGACATCAAAGATTTGCAAGGAAAACAGCCGGGAGGATGCCTTGTTTTGCAAGAGCTTGATGAACTTGCTCTTCAGCCTGCATGTTTCGTATAAGAGTCCTGTCATTCTGCTGCGTGACTTGTCCCAGGATATCCACGGGCATCTGGGAGATATAGACCAGGATGTAGAGGTGGAGAAAACAAACCACTTTGCAATAGTGAATTTGAGAACGGCTGCCCCCACTGTCTGTTTACTTGTTCTGAGTCAGGCCGAGAAGGTTCTAGAAGAAGTGGACTGGCTAATCACCAAGCTTAAGGGACAAGTGAGCCAAGAAACCTTATCAGAAGAGGCCTCTTCTCAGGCAACCCTACCAAATCAGCCTGTTGAGAAAGCTATCATCATGCAACTGGGAACTCTGCTTACATTTTTCCACGAGCTGGTGCAGACAGCTCTGCCATCAGGCAGCTGTGTGGACACCTTGTTAAAGGACTTGTGCAAAATGTACACCACACTTACAGCCCTTGTCAGATATTATCTCCAGGTGTGTCAGAGCTCCGGAGGAATTCCAAAAAATATGGAAAAGCTGGTGAAGCTGTCTGGTTCTCATCTGACCCCCCTGTGTTATTCTTTCATTTCTTACGTACAGGGCCAAAAACAGATTACTGCATACCAGCCCCTCTGGAATGTCTGCAGTTCCTTATTTTCCAGAACGTGGCATGTGGAACAAGTCTCCTGTTTCTCTCATGGCTCCAGTTGCAGAGCCTCTCTGTATTTTCAGAATAAGAGTAAGAGCCTGAACTATACGGGAGAGAAAAAGGAGAAACCTGCTGCCGTTGCCACAGCCATGGCCAGAGTTCTTCGGGAAACCAAGCCAATCCCTAACCTCATCTTTGCCATAGAACAGTATGAAAAATTTCTCATCCACCTTTCTAAGAAGTCCAAGGTGAACCTGATGCAGCACATGAAGCTCAGCACCTCACGAGACTTCAAGATCAAAGGAAACATCCTAGACATGGTTCTTCGAGAGGATGGTGAAGATGAAAATGAAGAGGGCACTGCATCAGAGCATGGGGGACAGAACAAAGAACCAGCCAAGAAGAAAAGGAAAAAATAA MLGLLVALLALGLAVFALLDVWYLVRLPCAVLRARLLQPRVRDLLAEQRFPGRVLPSDLDLLLHMNNARYLREADFARVAHLTRCGVLGALRELRAHTVLAASCARHRRSLRLLEPFEVRTRLLGWDDRAFYLEARFVSLRDGFVCALLRFRQHLLGTSPERVVQHLCQRRRSLLNLLSSQEEDFNSKEALLLVTVLTSLSKLLEPSSPQFVQMLSWTSKICKENSREDALFCKSLMNLLFSLHVSYKSPVILLRDLSQDIHGHLGDIDQDVEVEKTNHFAIVNLRTAAPTVCLLVLSQAEKVLEEVDWLITKLKGQVSQETLSEEASSQATLPNQPVEKAIIMQLGTLLTFFHELVQTALPSGSCVDTLLKDLCKMYTTLTALVRYYLQVCQSSGGIPKNMEKLVKLSGSHLTPLCYSFISYVQGQKQITAYQPLWNVCSSLFSRTWHVEQVSCFSHGSSCRASLYFQNKSKSLNYTGEKKEKPAAVATAMARVLRETKPIPNLIFAIEQYEKFLIHLSKKSKVNLMQHMKLSTSRDFKIKGNILDMVLREDGEDENEEGTASEHGGQNKEPAKKKRKK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31828 SLC35E2B::KIAA2013 ENSG00000189339.12::ENSG00000116685.17 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1684 TRUE 3058 TRUE 1154 SLC35E2B ENSG00000189339.12 protein_coding - - chr1:1659529-1692795:- chr1:1690976:- chr1:1590990-1624234:- chr1:1622415:- KIAA2013 ENSG00000116685.17 protein_coding - - chr1:11919591-11926428:- chr1:11923489:- chr1:11979648-11986485:- chr1:11983546:- chr1:1682156,chr1:1682161,chr1:1682164 chr1:11925218,chr1:11925220,chr1:11925223 NA NA chr1:1613595,chr1:1613600,chr1:1613603 chr1:11985275,chr1:11985277,chr1:11985280 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTRACHROMOSOMAL[chr1:10.23Mb] 9 41 9 20.38 ONLY_REF_SPLICE YES_LDAS 0.3179 GT 1.2729 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31834 BACH2::ENSG00000288714 ENSG00000112182.16::ENSG00000288714.1 JHOS2 SRR8615922 SRR8652066 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BACH2 ENSG00000112182.16 protein_coding - - chr6:89926528-90296843:- chr6:90206569:- chr6:90636247-91006562:- chr6:90916288:- ENSG00000288714 ENSG00000288714.1 lncRNA + + chr6:140148490-140785421:+ chr6:140539233:+ chr6:140469627-141106558:+ chr6:140860370:+ chr6:90099843,chr6:90099846 chr6:140358773,chr6:140358770 NA NA chr6:90809562,chr6:90809565 chr6:140679910,chr6:140679907 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BACH2:Oncogene"] 6 19 6 13.6 INCL_NON_REF_SPLICE YES_LDAS 0.212 GT 1.8892 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-4465 chr6:140683814-140683883:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31845 GNB1L::SEPTIN5 ENSG00000185838.14::ENSG00000184702.20 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1692 FALSE NA FALSE NA GNB1L ENSG00000185838.14 protein_coding - - chr22:19783223-19854939:- chr22:19806659:- chr22:19770746-19842462:- chr22:19794182:- SEPTIN5 ENSG00000184702.20 protein_coding + + chr22:19714503-19724224:+ chr22:19719602:+ chr22:19702026-19711747:+ chr22:19707125:+ chr22:19804159,chr22:19804165 chr22:19717947,chr22:19717941 NA NA chr22:19791682,chr22:19791688 chr22:19705470,chr22:19705464 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WD40|12-53|5.5e-05^ANAPC4_WD40|42-74|0.0074^WD40|60-96|1.9e-06^ANAPC4_WD40|136-167|0.42^WD40|176-194|5.2e-05^ANAPC4_WD40|180-209|0.00017 Septin-PARTIAL|~55-318|2.5e-132^RsgA_GTPase-PARTIAL|~55-113|6.5e-08^MMR_HSR1-PARTIAL|~55-178|7.3e-08^GTP_EFTU-PARTIAL|~55-119|0.00017^VapE-like_dom-PARTIAL|~55-82|5.2e-06^Ras-PARTIAL|~55-111|1.4e-05^AAA_16-PARTIAL|~55-69|7.6e-05^ABC_tran-PARTIAL|~55-67|0.00013^Dynamin_N-PARTIAL|~55-65|0.19^Roc-PARTIAL|~55-111|0.00011^NACHT-PARTIAL|~55-66|9.7e-05^AAA_29-PARTIAL|~55-62|0.00019^AAA_22-PARTIAL|~55-67|0.00039^Dynamin_N|100-128|0.00059^RsgA_GTPase|175-240|0.018^GTP_EFTU|175-228|0.0014^MMR_HSR1|228-241|5.3^AAA_22|270-321|3^ABC_tran|328-364|2.9^AAA_22|351-366|3.7 none 32 14 32 14 ONLY_REF_SPLICE YES_LDAS 0.4032 GT 1.7465 AG 1.8892 ENST00000405009.5 1-516 ENST00000455784.7 55-1110 chr22|-|[2]19806659-19806757[0]|[2]19812285-19812447[2]|[1]19820598-19820723[2]|[1]19821228-19821355[0]<==>chr22|+|[0]19719602-19719698[0]|[1]19719806-19719892[0]|[1]19720115-19720238[1]|[2]19720320-19720454[1]|[2]19720549-19720666[2]|[0]19720768-19720869[2]|[0]19721640-19721736[0]|[1]19721822-19721957[1]|[2]19722237-19722339[2]|[0]19722428-19722484[2] atgacggccccctgcccgccgccacctccagacccccagtttgtcctccgaggcacccagtcaccggtgcatgcgctgcacttctgcgaaggagcccaggctcaggggcgcccgctcctcttctcagggtctcagagtggcctggtacacatctggagcctgcagacgcggagagcggttaccaccctggatggccacggcggccagtgtgtgacctggctgcagacgctgccccaggggcgccagctcctcagtcagggccgggacctgaagctgtgcctgtgggacctcgcggagggcaggagcgctgtcgtggactccgtgtgcttggagagtgtgggcttctgccggagcagcatcctggccgggggccagccacgctggacgcttgccgtgccagggaggggcagcgacgaggttcagattctggagatgccctccaagacgtcagtgtgcgccctgaagccgaaggcagatgccaagctgggcatgcccatgtgcctgcggctgtggcagGACATTGACAAGCAGTACGTGGGCTTCGCCACACTGCCCAACCAGGTGCACCGCAAGTCGGTGAAGAAAGGCTTTGACTTCACACTCATGGTGGCTGGTGAGTCAGGCCTGGGGAAGTCCACACTGGTCCACAGCCTCTTCCTGACAGACTTGTACAAGGACCGGAAGCTGCTCAGTGCTGAGGAGCGCATCAGCCAGACGGTAGAGATTCTAAAACACACGGTGGACATTGAGGAGAAGGGAGTCAAGCTGAAGCTCACCATCGTGGACACGCCGGGATTCGGGGACGCTGTCAACAACACCGAGTGCTGGAAGCCCATCACCGACTATGTGGACCAGCAGTTTGAGCAGTACTTCCGTGATGAGAGCGGCCTCAACCGAAAGAACATCCAAGACAACCGAGTGCACTGCTGCCTATACTTCATCTCCCCCTTCGGGCATGGGCTGCGGCCAGTGGATGTGGGTTTCATGAAGGCATTGCATGAGAAGGTCAACATCGTGCCTCTCATCGCCAAAGCTGACTGTCTTGTCCCCAGTGAGATCCGGAAGCTGAAGGAGCGGATCCGGGAGGAGATTGACAAGTTTGGGATCCATGTATACCAGTTCCCTGAGTGTGACTCGGACGAGGATGAGGACTTCAAGCAGCAGGACCGGGAACTGAAGGAGAGCGCGCCCTTCGCCGTTATAGGCAGCAACACGGTGGTGGAGGCCAAGGGGCAGCGGGTCCGGGGCCGACTGTACCCCTGGGGGATCGTGGAGGTGGAGAACCAGGCGCATTGCGACTTCGTGAAGCTGCGCAACATGCTCATCCGCACGCATATGCACGACCTCAAGGACGTGACGTGCGACGTGCACTACGAGAACTACCGCGCGCACTGCATCCAGCAGATGACCAGCAAACTGACCCAGGACAGCCGCATGGAGAGCCCCATCCCGATCCTGCCGCTGCCCACCCCGGACGCCGAGACTGAGAAGCTTATCAGGATGAAGGATGAGGAACTGAGGCGCATGCAGGAGATGCTGCAGAGGATGAAGCAGCAGATGCAGGACCAGTGA MTAPCPPPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAVTTLDGHGGQCVTWLQTLPQGRQLLSQGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSILAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQDIDKQYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVHSLFLTDLYKDRKLLSAEERISQTVEILKHTVDIEEKGVKLKLTIVDTPGFGDAVNNTECWKPITDYVDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPVDVGFMKALHEKVNIVPLIAKADCLVPSEIRKLKERIREEIDKFGIHVYQFPECDSDEDEDFKQQDRELKESAPFAVIGSNTVVEAKGQRVRGRLYPWGIVEVENQAHCDFVKLRNMLIRTHMHDLKDVTCDVHYENYRAHCIQQMTSKLTQDSRMESPIPILPLPTPDAETEKLIRMKDEELRRMQEMLQRMKQQMQDQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE septin 5 2 AML leukaemia_lymphoma fusion translocation 31858 SKP2::TTC23L ENSG00000145604.17::ENSG00000205838.15 SNU182 SRR8615932 SRR8670771 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE FALSE TRUE 1695 FALSE NA FALSE NA SKP2 ENSG00000145604.17 protein_coding + + chr5:36151989-36196849:+ chr5:36177292:+ chr5:36152091-36196951:+ chr5:36177394:+ TTC23L ENSG00000205838.15 protein_coding + + chr5:34838833-34900511:+ chr5:34845487:+ chr5:34838938-34900616:+ chr5:34845592:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LRR_8|11-22|3.1^F-box-like|131-176|1.3e-19^F-box|131-172|2.2e-13^F-box_5|154-164|3.7e-05^LRR_4|172-180|3.6^LRR_8|217-249|0.012^LRR_4|217-249|0.0062^FBXL18_LRR|240-303|2.8e-05^LRR_8|241-273|0.55^LRR_4|241-274|0.0014^LRR_6|262-274|0.0089^LRR_4|265-297|0.01^LRR_6|292-300|0.34^LRR_6|316-326|0.5^FBXL18_LRR|328-354|0.00054^LRR_4|335-353|0.0022^LRR_8|341-379|0.00022^LRR_6|343-353|0.017^LRR_4|344-379|0.012^F-box|368-379|5.3^LRR_6|369-379|0.17^LRR_6|394-402|2.6^LRR_8|419-431|1.9 Flagellin_N-PARTIAL|~69-92|0.26^DDE_Tnp_ISL3-PARTIAL|~69-81|2.3^TPR_12|86-135|0.0059^TPR_10|93-108|0.16^TPR_10|112-122|2.4^TPR_1|112-123|1.4^TPR_2|112-123|4^Sel1|113-130|0.085^DDE_Tnp_ISL3|133-201|6.7e-05^TPR_1|165-190|0.0039^TPR_2|165-190|0.0022^TPR_19|167-183|3^TPR_12|169-193|0.51^TPR_10|169-183|1.1^Sel1|181-190|5.4^TPR_12|218-240|0.02^TPR_19|218-237|0.65^TPR_2|218-240|0.0024^TPR_10|219-240|0.075^TPR_1|224-240|0.005^Sel1|230-239|0.17^TPR_12|255-313|8e-09^Flagellin_N|256-316|0.00032^TPR_2|258-283|0.0066^TPR_10|261-289|0.0028^TPR_1|266-283|0.0036^Sel1|267-281|0.0032^TPR_19|270-312|0.00045^DDE_Tnp_ISL3|289-298|1.3^TPR_2|303-312|3.8^TPR_10|321-337|0.22^TPR_12|322-344|0.3 ["SKP2:Oncogene"];INTRACHROMOSOMAL[chr5:1.25Mb] 9 3 9 2.92 ONLY_REF_SPLICE YES_LDAS 0.1045 GT 1.8256 AG 1.7819 ENST00000546211.6 1-1163 ENST00000514080.2 69-1242 chr5|+|[0]36152263-36152270[1]|[2]36152771-36153042[0]|[1]36159773-36159874[0]|[1]36163645-36163756[1]|[2]36166519-36166662[1]|[2]36168313-36168447[1]|[2]36170344-36170442[1]|[2]36171603-36171733[0]|[1]36176965-36177016[1]|[2]36177185-36177292[1]<==>chr5|+|[2]34845487-34845673[2]|[0]34850185-34850308[0]|[1]34862898-34863054[1]|[2]34864437-34864562[1]|[2]34866892-34867069[2]|[0]34868905-34869013[0]|[1]34880181-34880308[2]|[0]34888455-34888537[1]|[2]34896770-34896851[2] atgcacaggaagcacctccaggagattccagacctgagtagcaacgttgccaccagcttcacgtggggatgggattccagcaagacttctgaactgctgtcaggcatgggggtctccgccctggagaaagaggagcccgacagtgagaacatcccccaggaactgctctcaaacctgggccacccggagagccccccacggaaacggctgaagagcaaagggagtgacaaagactttgtgattgtccgcaggcctaagctaaatcgagagaactttccagtgcttcctggcatcacttcccaaataaactacttgaagtcagagcttcagaatctgcttctgggggacccaaacttaaataaagggcagatacggggttttggtgtttcatgggactcccttccggatgagctgctcttgggaatcttttcctgtctgtgcctccctgagctgctaaaggtctctggtgtttgtaagaggtggtatcgcctagcgtctgatgagtctctatggcagaccttagacctcacaggtaaaaatctgcacccggatgtgactggtcggttgctgtctcaaggggtgattgccttccgctgcccacgatcatttatggaccaaccattggctgaacatttcagcccttttcgtgtacagcacatggacctatcgaactcagttatagaagtgtccaccctccacggcatactgtctcagtgttccaagttgcagaatctaagcctggaaggcctgcggctttcggatcccattgtcaatactctcgcaaaaaactcaaatttagtgcgacttaacctttctgggtgttctggattctctgaatttgccctgcagactttgctaagcagctgttccagactggatgagctgaacctctcctggtgttttgatttcactgaaaagcatgtacaggtggctgttgcgcatgtgtcagagaccatcacccagctgaatcttagcggctacagaaagaatctccagaaatcagatctctctactttagttagaagatgccccaatcttgtccatctagacttaagtgatagtgtcatgctaaagaatgactgctttcaggaatttttccagctcaactacctccaacacctatcactcagtcggtgctatgatataatacctgaaactttactGTCACAGCAAACCGAGATCCCAGCTCACCAGCAAACAGATGAGTTGTATCCCACTGGTGGGTGTGGAGAGAGTGAAGAGGAAACTAAAGCTAAAGAGAAGGAGAAGGCCATAGACTGTATGTCTCATCCCAAAGAGAAATTAGCCCAATCCCAGAAGAAAGTAGCTCAGCTGATTAAGGAAAAAATGAATACTCAAGCAAACAAGGAGCTGATTCGATGTGTCATCCTTTCTCGGATTATTTTTGGGGACCATCACTGGAAATGTGCACGAGCTCTGGCCAACCTAGCTTATGGCTACTTGACACTGAGAGGCCTCCCAGTTCAGGCCAAGAAACATGCTACATCAGCCAAGAATACACTGTTGACCTGGAAGGCAAATACGACCTCAAATAAGGAGAAAGAGGAAATCCTGGAAGCTCTGGTCAAGCTGTACTACACTCTGGGCGTGGCCTGGCTCCTGCAGAACCGTGGCAGAGAAGCCTATTTCAACCTGCAGAAGGCAGAGAGAAACATGAAGGAGCTGAAAGAATTATATAAAGGAGGTGTTTGTGAATTACAAGTCTCTGAGAACGACCTAACACTTGCTTTGGGCAGAGCCTCCTTGGCCATCCACAGACTGAACCTAGCTCTGGCATACTTTGAAAAGGCAATTGGCGATGTTATTGCTGCCAAGGGTGATAGGACGTCAGATCTGATCAGCCTGTACGAGGAAGCTGCTCAGATAGAGCAGCTGAGGAGGAACCACAACCAGGCCATCCAGTACTTGCAGCAGGCTCATTCTGTCTGTGTTTCTTTGTTCACTGAAGTCAGCCCCAAAACTGCAGAAATGAGTGCGTTACTGGCCAAAGCTTATGCCATGTCTGGAGAGGCCCAGCACAGGGATGCTGTTGAGATATATTTCATAAGAAGTATCAATGCATATCGAGCAACATTGGGCTCAGAGGATTTTGAAACACTGAGCACCACTGAAGAATTTTGCAAATGGCTTGTCCAAAATGGAGAAAAACAGTGTCTGATGATTCAAATCTTTGTATATGGAGGTGAACACAGTAGAAGTAGGGAGACAAAGAGCCTCCTTACCCTGTGGCAGAGGACAAGTAGCAGTTCATCCAGATGGAGAAGAGAAGCCATTCCTGGAAGAAGGAACTCTACATACAAAGGCACAGAAGCATGA MHRKHLQEIPDLSSNVATSFTWGWDSSKTSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPRKRLKSKGSDKDFVIVRRPKLNRENFPVLPGITSQINYLKSELQNLLLGDPNLNKGQIRGFGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLSQQTEIPAHQQTDELYPTGGCGESEEETKAKEKEKAIDCMSHPKEKLAQSQKKVAQLIKEKMNTQANKELIRCVILSRIIFGDHHWKCARALANLAYGYLTLRGLPVQAKKHATSAKNTLLTWKANTTSNKEKEEILEALVKLYYTLGVAWLLQNRGREAYFNLQKAERNMKELKELYKGGVCELQVSENDLTLALGRASLAIHRLNLALAYFEKAIGDVIAAKGDRTSDLISLYEEAAQIEQLRRNHNQAIQYLQQAHSVCVSLFTEVSPKTAEMSALLAKAYAMSGEAQHRDAVEIYFIRSINAYRATLGSEDFETLSTTEEFCKWLVQNGEKQCLMIQIFVYGGEHSRSRETKSLLTLWQRTSSSSSRWRREAIPGRRNSTYKGTEA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31865 PVT1::SLC1A2 ENSG00000249859.14::ENSG00000110436.13 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1697 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128010444:+ chr8:128806772-129199347:+ chr8:129022690:+ SLC1A2 ENSG00000110436.13 protein_coding - - chr11:35251205-35420063:- chr11:35317516:- chr11:35272752-35441610:- chr11:35339063:- chr8:128043199,chr8:128015712,chr8:128015617,chr8:128015617,chr8:128015548,chr8:128015711,chr8:128015711,chr8:128015707,chr8:128015695,chr8:128015688,chr8:128015540,chr8:128015711,chr8:128015323,chr8:128015690,chr8:128015790,chr8:128015792,chr8:128015787,chr8:128043194,chr8:128043190 chr11:35336473,chr11:35333697,chr11:35333843,chr11:35333820,chr11:35333161,chr11:35333178,chr11:35333176,chr11:35333178,chr11:35333178,chr11:35333178,chr11:35333305,chr11:35333314,chr11:35333338,chr11:35333178,chr11:35333420,chr11:35333420,chr11:35333420,chr11:35336478,chr11:35336478 NA NA chr8:129055445,chr8:129027958,chr8:129027863,chr8:129027863,chr8:129027794,chr8:129027957,chr8:129027957,chr8:129027953,chr8:129027941,chr8:129027934,chr8:129027786,chr8:129027957,chr8:129027569,chr8:129027936,chr8:129028036,chr8:129028038,chr8:129028033,chr8:129055440,chr8:129055436 chr11:35358020,chr11:35355244,chr11:35355390,chr11:35355367,chr11:35354708,chr11:35354725,chr11:35354723,chr11:35354725,chr11:35354725,chr11:35354725,chr11:35354852,chr11:35354861,chr11:35354885,chr11:35354725,chr11:35354967,chr11:35354967,chr11:35354967,chr11:35358025,chr11:35358025 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr11] 319 413 319 408.9 ONLY_REF_SPLICE YES_LDAS 8.7193 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204,hsa-mir-1205,hsa-mir-1206 chr8:127795962-127796028:+,chr8:127960633-127960695:+,chr8:128008898-128008956:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31866 FGFR2::PLPP4 ENSG00000066468.24::ENSG00000203805.11 SNU16 SRR8615934 SRR8670768 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1698 FALSE NA FALSE NA FGFR2 ENSG00000066468.24 protein_coding - - chr10:121478332-121598458:- chr10:121496532:- chr10:123237846-123357972:- chr10:123256046:- PLPP4 ENSG00000203805.11 protein_coding + + chr10:120457227-120592065:+ chr10:120503818:+ chr10:122216739-122351577:+ chr10:122263330:+ chr10:121481855,chr10:121481945,chr10:121481961,chr10:121481971,chr10:121481982,chr10:121481987,chr10:121482015,chr10:121482029,chr10:121482032,chr10:121482046,chr10:121482081,chr10:121482100,chr10:121489276,chr10:121491889,chr10:121492020,chr10:121492020,chr10:121491887,chr10:121491888,chr10:121481847,chr10:121482067,chr10:121481881,chr10:121481996,chr10:121481996,chr10:121482007,chr10:121489288,chr10:121489247,chr10:121489185 chr10:120479252,chr10:120479004,chr10:120479120,chr10:120478970,chr10:120478966,chr10:120479098,chr10:120479068,chr10:120479056,chr10:120479056,chr10:120479039,chr10:120479004,chr10:120479004,chr10:120482722,chr10:120479253,chr10:120479060,chr10:120479055,chr10:120478959,chr10:120479253,chr10:120478772,chr10:120479027,chr10:120479045,chr10:120479092,chr10:120479096,chr10:120479129,chr10:120482714,chr10:120482757,chr10:120482818 NA NA chr10:123241369,chr10:123241459,chr10:123241475,chr10:123241485,chr10:123241496,chr10:123241501,chr10:123241529,chr10:123241543,chr10:123241546,chr10:123241560,chr10:123241595,chr10:123241614,chr10:123248790,chr10:123251403,chr10:123251534,chr10:123251534,chr10:123251401,chr10:123251402,chr10:123241361,chr10:123241581,chr10:123241395,chr10:123241510,chr10:123241510,chr10:123241521,chr10:123248802,chr10:123248761,chr10:123248699 chr10:122238764,chr10:122238516,chr10:122238632,chr10:122238482,chr10:122238478,chr10:122238610,chr10:122238580,chr10:122238568,chr10:122238568,chr10:122238551,chr10:122238516,chr10:122238516,chr10:122242234,chr10:122238765,chr10:122238572,chr10:122238567,chr10:122238471,chr10:122238765,chr10:122238284,chr10:122238539,chr10:122238557,chr10:122238604,chr10:122238608,chr10:122238641,chr10:122242226,chr10:122242269,chr10:122242330 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame C2-set_2|44-79|0.19^Ig_3|45-110|5e-11^I-set|46-123|2.7e-08^Ig_2|46-112|1.7e-08^V-set|46-75|0.5^ig|48-120|3e-07^Ig_5|51-120|8.4e-05^Ig_4|57-116|0.0031^V-set|92-120|0.00089^ig|164-240|2.2e-13^Ig_3|168-235|2.7e-15^Ig_2|169-239|1.6e-12^I-set|171-248|1.8e-18^Ig_5|173-237|0.0095^C2-set_2|173-202|0.00034^Ig_4|188-234|0.1^V-set|193-248|2.1e-07^V-set_CD47|211-250|0.00036^I-set|263-357|1.2e-12^V-set|265-358|2.1e-06^Ig_3|266-344|6.3e-12^Ig_2|266-352|1e-06^ig|268-350|1.3e-09^C2-set_2|281-295|0.64^Ig_5|314-344|0.16^Ig_4|315-347|0.3^V-set_CD47|319-346|0.077^Pkinase|379-419|2.7^C2-set_2|431-453|5.7^PK_Tyr_Ser-Thr|482-758|1.4e-105^Pkinase|484-756|7.1e-49^ABC1|486-549|0.088^Kinase-like|509-533|2.6^ABC1|590-654|1.1e-05^Pkinase_fungal|602-695|0.00019^Kinase-like|607-700|0.00029 DUF975-PARTIAL|~57-88|2.7e-05^PAP2|85-226|1e-31 ["FGFR2:ArcherDX_panel","FGFR2:OncomapV4_panel","FGFR2:FoundationOne_panel","FGFR2:Oncogene"];["CCLE_StarF2019"] 60 114 60 114 ONLY_REF_SPLICE YES_LDAS 2.0843 GT 1.9329 AG 1.5546 ENST00000457416.7 1-1866 ENST00000398250.6 57-816 chr10|-|[2]121496532-121496722[1]|[0]121498495-121498605[1]|[0]121500826-121500947[2]|[1]121503790-121503941[0]|[2]121515117-121515319[1]|[0]121518682-121518829[0]|[2]121519979-121520169[1]|[0]121538592-121538715[0]|[2]121551290-121551459[1]|[0]121564502-121564579[1]|[0]121565438-121565704[1]|[0]121593709-121593817[0]<==>chr10|+|[2]120503818-120503926[2]|[0]120513911-120514001[0]|[1]120518833-120518896[1]|[2]120520971-120521095[0]|[1]120575131-120575301[0]|[1]120589303-120589502[2] atggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagagccaccaaccaaataccaaatctctcaaccagaagtgtacgtggctgcgccaggggagtcgctagaggtgcgctgcctgttgaaagatgccgccgtgatcagttggactaaggatggggtgcacttggggcccaacaataggacagtgcttattggggagtacttgcagataaagggcgccacgcctagagactccggcctctatgcttgtactgccagtaggactgtagacagtgaaacttggtacttcatggtgaatgtcacagatgccatctcatccggagatgatgaggatgacaccgatggtgcggaagattttgtcagtgagaacagtaacaacaagagagcaccatactggaccaacacagaaaagatggaaaagcggctccatgctgtgcctgcggccaacactgtcaagtttcgctgcccagccggggggaacccaatgccaaccatgcggtggctgaaaaacgggaaggagtttaagcaggagcatcgcattggaggctacaaggtacgaaaccagcactggagcctcattatggaaagtgtggtcccatctgacaagggaaattatacctgtgtagtggagaatgaatacgggtccatcaatcacacgtaccacctggatgttgtggagcgatcgcctcaccggcccatcctccaagccggactgccggcaaatgcctccacagtggtcggaggagacgtagagtttgtctgcaaggtttacagtgatgcccagccccacatccagtggatcaagcacgtggaaaagaacggcagtaaatacgggcccgacgggctgccctacctcaaggttctcaagcactcggggataaatagttccaatgcagaagtgctggctctgttcaatgtgaccgaggcggatgctggggaatatatatgtaaggtctccaattatatagggcaggccaaccagtctgcctggctcactgtcctgccaaaacagcaagcgcctggaagagaaaaggagattacagcttccccagactacctggagatagccatttactgcataggggtcttcttaatcgcctgtatggtggtaacagtcatcctgtgccgaatgaagaacacgaccaagaagccagacttcagcagccagccggctgtgcacaagctgaccaaacgtatccccctgcggagacaggtaacagtttcggctgagtccagctcctccatgaactccaacaccccgctggtgaggataacaacacgcctctcttcaacggcagacacccccatgctggcaggggtctccgagtatgaacttccagaggacccaaaatgggagtttccaagagataagctgacactgggcaagcccctgggagaaggttgctttgggcaagtggtcatggcggaagcagtgggaattgacaaagacaagcccaaggaggcggtcaccgtggccgtgaagatgttgaaagatgatgccacagagaaagacctttctgatctggtgtcagagatggagatgatgaagatgattgggaaacacaagaatatcataaatcttcttggagcctgcacacaggatgggcctctctatgtcatagttgagtatgcctctaaaggcaacctccgagaatacctccgagcccggaggccacccgggatggagtactcctatgacattaaccgtgttcctgaggagcagatgaccttcaaggacttggtgtcatgcacctaccagctggccagaggcatggagtacttggcttcccaaaaaTTTTACAGAGTTTTTGGATCCGTTCCAGAGAGTCATCCAGCCAGAAGAGATCTGGCTCTATAAAAATCCTTTGGTGCAATCAGATAACATACCTACCCGCCTCATGTTTGCAATTTCTTTCCTCACACCCCTGGCTGTTATTTGTGTGGTGAAAATTATCCGGCGAACAGACAAGACTGAAATTAAGGAAGCCTTCTTAGCGGTGTCCTTGGCTCTTGCTTTGAATGGAGTCTGCACAAACACTATTAAATTAATAGTGGGAAGACCTCGCCCCGATTTCTTTTACCGCTGCTTTCCAGATGGAGTGATGAACTCGGAAATGCATTGCACAGGTGACCCCGATCTGGTGTCCGAGGGCCGCAAAAGCTTCCCCAGCATCCATTCCTCCTTTGCCTTTTCGGGCCTTGGCTTCACGACGTTCTACTTGGCGGGCAAGCTGCACTGCTTCACCGAGAGTGGGCGGGGAAAGAGCTGGCGGCTCTGTGCTGCCATCCTGCCCTTGTACTGCGCCATGATGATTGCCCTGTCCCGCATGTGCGACTACAAGCATCACTGGCAAGATTCCTTTGTGGGTGGAGTCATCGGCCTCATTTTTGCATACATTTGCTACAGACAGCACTATCCTCCTCTGGCCAACACAGCTTGCCATAAACCCTACGTTAGTCTGCGAGTCCCAGCCTCACTGAAGAAAGAGGAGAGGCCCACAGCTGACAGCGCACCCAGCTTGCCTCTGGAGGGGATCACCGAAGGCCCGGTATGA MVSWGRFICLVVVTMATLSLARPSFSLVEDTTLEPEEPPTKYQISQPEVYVAAPGESLEVRCLLKDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTASRTVDSETWYFMVNVTDAISSGDDEDDTDGAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREKEITASPDYLEIAIYCIGVFLIACMVVTVILCRMKNTTKKPDFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKFYRVFGSVPESHPARRDLAL*KSFGAIR*HTYPPHVCNFFPHTPGCYLCGENYPANRQD*N*GSLLSGVLGSCFEWSLHKHY*INSGKTSPRFLLPLLSRWSDELGNALHR*PRSGVRGPQKLPQHPFLLCLFGPWLHDVLLGGQAALLHREWAGKELAALCCHPALVLRHDDCPVPHVRLQASLARFLCGWSHRPHFCIHLLQTALSSSGQHSLP*TLR*SASPSLTEERGEAHS*QRTQLASGGDHRRPGM FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Fibroblast growth factor receptor 2 TK FGFR P21802 FALSE NA NA NA NA NA NA TRUE Prostate no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE fibroblast growth factor receptor 2 1 Yes gastric, NSCLC, endometrial epithelial oncogene, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 31882 MLLT6::GPSM2 ENSG00000275023.5::ENSG00000121957.15 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1701 FALSE NA FALSE NA MLLT6 ENSG00000275023.5 protein_coding + + chr17:38705273-38729795:+ chr17:38705741:+ chr17:36861526-36886048:+ chr17:36861994:+ GPSM2 ENSG00000121957.15 protein_coding + + chr1:108875350-108934545:+ chr1:108918613:+ chr1:109417972-109477167:+ chr1:109461235:+ chr17:38706011,chr17:38706011 chr1:108917724,chr1:108917721 NA NA chr17:36862264,chr17:36862264 chr1:109460346,chr1:109460343 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-HC5HC2H_2|6-39|0.0026^zf-HC5HC2H|8-39|0.0048^PHD|8-54|5.8e-09^PHD_2|20-55|6.9e-14^zf-HC5HC2H|55-75|0.06^PHD|63-70|0.77^zf-HC5HC2H_2-PARTIAL|64-109~|9.6e-33^PHD_2|64-71|0.57^PHD|83-88|3.2^zf-HC5HC2H-PARTIAL|85-109~|1.7e-19 none ["MLLT6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr1] 739 109 739 109 ONLY_REF_SPLICE YES_LDAS 6.2521 GT 1.8892 AG 1.8892 ENST00000620609.4 1-109 ENST00000674731.1 1136-1155 chr17|+|[0]38705633-38705741[0]<==>chr1|+|[1]108918613-108918632[2] atgaaggagatggtaggaggctgctgcgtatgttcggacgagaggggctgggccgagaacccgctggtctactgcgatgggcacgcgtgcagcgtggccgtccaccaagGTACAGAACTGGAACAGTGA MKEMVGGCCVCSDERGWAENPLVYCDGHACSVAVHQGTELEQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (AF17) 1 AL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31883 STARD7::TTC27 ENSG00000084090.14::ENSG00000018699.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1702 FALSE NA FALSE NA STARD7 ENSG00000084090.14 protein_coding - - chr2:96184859-96208827:- chr2:96194958:- chr2:96850597-96874565:- chr2:96860696:- TTC27 ENSG00000018699.13 protein_coding + + chr2:32628032-32821051:+ chr2:32733828:+ chr2:32853099-33046118:+ chr2:32958895:+ chr2:96193252,chr2:96193254 chr2:32710489,chr2:32710487 NA NA chr2:96858990,chr2:96858992 chr2:32935556,chr2:32935554 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PI31_Prot_N|86-122|0.0061^START|131-325|3.6e-24^PI31_Prot_N|320-354|0.00019 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:63.36Mb] 310 194 310 194 ONLY_REF_SPLICE YES_LDAS 3.7159 GT 1.8295 AG 1.9656 ENST00000337288.10 1-549 ENST00000317907.9 1234-2532 chr2|-|[2]96194958-96195007[1]|[0]96195341-96195549[2]|[1]96208145-96208434[0]<==>chr2|+|[0]32733828-32733923[2]|[0]32736694-32736816[2]|[0]32758292-32758519[2]|[0]32777882-32777980[2]|[0]32782626-32782678[1]|[2]32786984-32787149[2]|[0]32811024-32811221[2]|[0]32812504-32812615[0]|[1]32817457-32817557[2]|[0]32820816-32820938[2] atgctcccgcggaggctgctggccgcctggctggcggggacgcggggcgggggcctgctggcgcttctggccaatcagtgccgcttcgtcacgggcctgcgcgtgcggcgcgcgcagcagatcgcgcagctctacggccgcctctactccgagagctcacgccgcgttctcctcggccgcctctggcgccggctgcacggccgtcctggccatgcctctgccttgatggcggcgttagccggcgtcttcgtttgggacgaggagaggatccaggaggaggagttgcagagatctattaatgagatgaagcggttggaagaaatgtcaaatatgtttcagagctctggagtccagcaccaccctccagaaccaaaagcccaaacagaagggaatgaagattcagagggcaaagagcaacgttgggaaatggtgatggataagaaacactttaagctgtggcggcgcccaattacaggcacccacctttaccagtaccgagtttttggaacctacacagatgtgacacctcggcagttcttcaatgttcagGCTCTTGCAGACCAATTTGAAGATAAAACTACATCTGTATTGGAACGCCTGAAGATTTTCTATTGCTGTCAAGTACCACCTCACTGGGCCATTCAGCGCCAACTTGCAAGTTTGCTCTTTGAGTTGGGATGTACCAGTTCAGCCCTTCAGATATTTGAAAAGCTAGAAATGTGGGAAGATGTTGTCATTTGTTATGAAAGAGCCGGGCAGCACGGAAAGGCAGAAGAAATCCTTAGACAAGAGCTGGAGAAAAAAGAAACGCCTAGTTTATACTGCTTGCTTGGAGATGTCCTCGGAGACCATTCTTGCTATGACAAGGCCTGGGAGTTGTCCCGGTACCGCAGTGCTCGTGCTCAGCGCTCCAAAGCCCTCCTTCATCTTCGGAACAAGGAGTTTCAAGAGTGTGTAGAGTGCTTCGAACGCTCGGTTAAGATTAATCCCATGCAGCTCGGGGTGTGGTTTTCTCTCGGTTGTGCCTATTTGGCCTTGGAAGACTATCAAGGTTCAGCAAAGGCATTTCAGCGCTGTGTGACTCTAGAACCCGATAATGCTGAAGCTTGGAACAATTTGTCAACTTCCTATATCCGATTAAAACAAAAAGTAAAAGCTTTTAGAACTTTACAAGAAGCTCTCAAGTGTAACTATGAACACTGGCAGATTTGGGAAAACTACATCCTCACCAGCACTGACGTTGGGGAATTTTCAGAAGCCATTAAAGCTTATCACCGGCTCTTGGACTTACGTGACAAATACAAAGATGTTCAGGTCCTTAAAATTCTAGTCAGGGCAGTGATTGATGGGATGACTGATCGAAGTGGAGATGTTGCAACTGGCCTCAAAGGAAAGCTGCAGGAGTTATTTGGCAGAGTGACTTCAAGAGTGACAAATGATGGAGAAATCTGGAGGCTGTATGCCCACGTATATGGAAATGGGCAGAGTGAAAAGCCTGATGAAAATGAAAAGGCATTCCAGTGCCTCTCAAAGGCATACAAGTGTGACACCCAGTCCAATTGTTGGGAGAAAGATATTACATCATTTAAGGAAGTTGTTCAAAGAGCCTTAGGACTTGCACATGTGGCCATAAAATGCAGTAAAAACAAATCCAGTTCCCAAGAAGCTGTACAAATGCTTTCTTCTGTTCGACTCAATTTACGGGGCTTGTTATCTAAAGCAAAGCAACTTTTTACAGATGTGGCAACTGGAGAAATGTCCAGGGAATTAGCTGATGACATAACAGCTATGGACACCTTAGTGACAGAGCTCCAAGACCTAAGCAACCAGTTTCGAAATCAGTATTGA MLPRRLLAAWLAGTRGGGLLALLANQCRFVTGLRVRRAQQIAQLYGRLYSESSRRVLLGRLWRRLHGRPGHASALMAALAGVFVWDEERIQEEELQRSINEMKRLEEMSNMFQSSGVQHHPPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQALADQFEDKTTSVLERLKIFYCCQVPPHWAIQRQLASLLFELGCTSSALQIFEKLEMWEDVVICYERAGQHGKAEEILRQELEKKETPSLYCLLGDVLGDHSCYDKAWELSRYRSARAQRSKALLHLRNKEFQECVECFERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYILTSTDVGEFSEAIKAYHRLLDLRDKYKDVQVLKILVRAVIDGMTDRSGDVATGLKGKLQELFGRVTSRVTNDGEIWRLYAHVYGNGQSEKPDENEKAFQCLSKAYKCDTQSNCWEKDITSFKEVVQRALGLAHVAIKCSKNKSSSQEAVQMLSSVRLNLRGLLSKAKQLFTDVATGEMSRELADDITAMDTLVTELQDLSNQFRNQY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31884 NADK::SSU72 ENSG00000008130.15::ENSG00000160075.12 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1704 FALSE NA FALSE NA NADK ENSG00000008130.15 protein_coding - - chr1:1751232-1780457:- chr1:1778289:- chr1:1682671-1711896:- chr1:1709728:- SSU72 ENSG00000160075.12 protein_coding - - chr1:1541673-1574863:- chr1:1545002:- chr1:1477053-1510243:- chr1:1480382:- chr1:1775158,chr1:1775161 chr1:1562117,chr1:1562117 NA NA chr1:1706597,chr1:1706600 chr1:1497497,chr1:1497497 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.18Mb] 235 0 235 0 ONLY_REF_SPLICE YES_LDAS 1.7326 GT 1.5219 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31885 CTDSPL2::GOLM2 ENSG00000137770.14::ENSG00000166734.20 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1703 FALSE NA FALSE NA CTDSPL2 ENSG00000137770.14 protein_coding + + chr15:44427622-44529038:+ chr15:44459200:+ chr15:44719820-44821236:+ chr15:44751398:+ GOLM2 ENSG00000166734.20 protein_coding + + chr15:44288719-44415758:+ chr15:44413336:+ chr15:44580917-44707956:+ chr15:44705534:+ chr15:44466405,chr15:44466400 chr15:44392465,chr15:44392461 NA NA chr15:44758603,chr15:44758598 chr15:44684663,chr15:44684659 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none none 231 108 231 108 ONLY_REF_SPLICE YES_LDAS 2.4994 GT 1.8062 AG 1.6895 ENST00000558373.5 1-186 ENST00000345795.6 1073-1143 chr15|+|[0]44459015-44459200[2]<==>chr15|+|[1]44413336-44413406[2] atgaggctgagaacacggaaagcttctcagcagtcaaatcaaatccaaacacaacgcactgccagagcaaagaggaaatattcagaggttgatgatagcctgccttcaggaggagaaaaaccatcgaagaatgaaaccggcttgttgtcttcaattaaaaaatttattaaaggaagcacacctaagATGATGAAGAACGAGAGCTTCAAATGGATCCTGCAGACTATGGAAAGCAACATTTCAATGATGTCCTTTAA MRLRTRKASQQSNQIQTQRTARAKRKYSEVDDSLPSGGEKPSKNETGLLSSIKKFIKGSTPKMMKNESFKWILQTMESNISMMSF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Prostate exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31887 ASF1A::ENSG00000253194 ENSG00000111875.8::ENSG00000253194.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ASF1A ENSG00000111875.8 protein_coding + + chr6:118894152-118909171:+ chr6:118894522:+ chr6:119215316-119230336:+ chr6:119215686:+ ENSG00000253194 ENSG00000253194.2 lncRNA + + chr6:118934770-119182745:+ chr6:119179857:+ chr6:119255935-119503910:+ chr6:119501022:+ chr6:118895173,chr6:118895172,chr6:118895172 chr6:119109942,chr6:119109938,chr6:119109939 NA NA chr6:119216337,chr6:119216336,chr6:119216336 chr6:119431107,chr6:119431103,chr6:119431104 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 87 32 87 32 ONLY_REF_SPLICE YES_LDAS 0.8773 GT 1.9656 AG 1.2729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31889 SUGP2::UPF1 ENSG00000064607.17::ENSG00000005007.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1706 FALSE NA FALSE NA SUGP2 ENSG00000064607.17 protein_coding - - chr19:18990888-19034023:- chr19:19001613:- chr19:19101697-19144832:- chr19:19112422:- UPF1 ENSG00000005007.14 protein_coding + + chr19:18831959-18868230:+ chr19:18845980:+ chr19:18942768-18979039:+ chr19:18956789:+ chr19:18996023,chr19:18996030 chr19:18835741,chr19:18835734 NA NA chr19:19106832,chr19:19106839 chr19:18946550,chr19:18946543 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Surp|603-651|5.6e-08^Surp|800-850|3.3e-16^G-patch|1026-1069|3.8e-18^G-patch_2|1029-1071|4.7e-08 UPF1_Zn_bind-PARTIAL|~232-272|8.6e-80^UvrD-helicase|247-304|4.3^UPF1_1B_dom|324-425|4.5e-31^Helicase_RecD|325-360|9.1^AAA_30|402-449|1.2^AAA_11|482-601|3.4e-25^AAA_30|482-681|5.1e-15^ResIII|482-551|2.2e-09^UvrD-helicase|482-547|0.00023^DEAD|485-551|4.4e-06^AAA_19|486-680|1.4e-14^nSTAND3|490-533|4e-06^ATPase|496-560|1.3e-05^AAA_16|497-574|7.8e-06^AAA_22|497-541|0.00037^SLFN-g3_helicase|499-549|8.1e-06^SRP54|500-558|1.6e-05^PIF1|500-541|0.029^Helicase_RecD|501-548|4.6e-06^UPF1_Zn_bind|508-530|8.1^AAA_11|585-682|1.1e-30^UvrD-helicase|593-676|0.058^SLFN-g3_helicase|661-749|1.1^PIF1|662-686|0.0065^AAA_12|691-887|1.5e-66^ATPase|793-845|0.076^UvrD_C_2|834-884|0.00017^SLFN-g3_helicase|869-884|0.072^AAA_22|880-900|10^nSTAND3|881-908|1.5 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.12Mb] 56 26 56 26 ONLY_REF_SPLICE YES_LDAS 0.6046 GT 1.7232 AG 1.7968 ENST00000600377.1 1-3033 ENST00000599848.5 232-3390 chr19|-|[2]19001613-19001674[1]|[0]19004168-19004646[2]|[1]19008317-19008428[1]|[0]19009855-19010342[2]|[1]19019109-19019229[1]|[0]19024619-19026226[1]|[0]19030951-19031082[1]|[0]19033489-19033519[0]<==>chr19|+|[0]18845980-18846119[1]|[2]18847744-18847833[1]|[2]18850075-18850242[1]|[2]18850688-18850868[2]|[0]18852135-18852296[2]|[0]18852987-18853104[0]|[1]18853252-18853350[0]|[1]18854601-18854709[1]|[2]18854879-18855038[2]|[0]18855124-18855242[1]|[2]18855925-18856089[1]|[2]18856186-18856300[2]|[0]18856877-18857020[2]|[0]18857320-18857533[0]|[1]18860321-18860438[1]|[2]18860826-18860982[2]|[0]18862010-18862152[1]|[2]18863438-18863612[2]|[0]18864170-18864251[0]|[1]18865289-18865450[0]|[1]18865561-18865778[2]|[0]18866044-18866163[2] atgtccccgcctcgcgcggcggcggcggcggggcaaaataacatggcagccagacgaattacacaggagacttttgatgctgtattacaagaaaaagccaaacgatatcacatggatgccagtggtgaggctgtaagcgaaactcttcagtttaaagctcaagatctcttaagggcagtcccaagatccagagcagagatgtatgatgacgtccacagcgatggcagatactccctcagtggatctgtagctcactctagagatgccggaagagaaggcctgagaagtgacgtatttccagggccttccttcagatcaagcaacccttccatcagtgatgacagctactttcgcaaagaatgtggccgggatctggaattttctcactctgattctcgggaccaggtcattggccaccggaaattggggcatttccgttctcaggactggaaatttgcgctccgtggttcttgggaacaagactttggccatccagtttctcaagagtcctcttggtcacaggagtatagttttggtccctctgcagttttgggggactttggatcttccaggctgattgagaaagagtgtttggagaaggagagtcgggattatgacgtggaccatcctggggaggctgactctgtgcttaggggcggcagtcaagtccaggccagaggtcgagctctaaacatcgttgaccaggaaggttccctcctaggaaagggggagactcagggcctgctcacagctaaggggggtgttgggaaacttgtcacattgagaaatgtgagcacaaaaaaaatacccaccgtgaatcgtattactcccaaaactcagggcactaaccaaatccagaaaaacactccaagtcctgatgtgaccctggggacaaacccagggacagaagatatccagttccccattcagaagatccctctggggctggatctgaagaatcttcggctccccagaagaaagatgagctttgacatcatagataagtctgatgttttttcaagatttgggatagaaataatcaaatgggcaggattccacaccataaaagatgatattaaattttcccaacttttccagactctctttgaacttgaaacagaaacctgtgctaaaatgcttgcctcattcaaatgttccttaaaaccagagcacagagatttttgcttttttactatcaaatttttaaagcactctgctttgaaaacacccagagttgataatgagtttttaaacatgcttttagacaaaggtgctgtgaagaccaaaaattgcttttttgaaatcataaagccttttgacaagtacataatgagacttcaagaccggcttctgaagagtgtcacacctttgcttatggcctgcaatgcctacgagctaagtgtcaagatgaagaccctcagtaaccccctggacttggctcttgccctagaaaccaccaactctctctgccggaagtctttggcccttttgggacagacattttccttggcctcttctttccggcaggagaaaatcttagaagctgtcggcctgcaagatatagctccctcacctgctgcgtttccaaacttcgaagactccactttgtttgggcgagagtacatagaccacctgaaggcctggctagtcagcagcggatgtcccctccaggttaagaaagccgaaccagagccgatgcgagaggaggagaaaatgattcctcctacgaaacctgaaattcaggccaaggctccaagtagtctgagtgatgctgtcccccagcgagcagatcacagggtagtgggcaccatcgaccagcttgtgaaacgtgtcatcgaaggcagcctgtctcccaaagagagaactcttctcaaagaggaccctgcttactggtttttgtctgatgaaaatagtctggagtataaatattacaagctgaagttggcagaaatgcagcggatgagcgagaacttgcgaggagccgaccagaagccgacctcagcagactgtgcagtgagggccatgctgtactcccgggctgtccgcaacctcaagaagaaactccttccgtggcagcggcgggggctcctccgtgctcaagggctccggggctggaaggcgaggagagcgaccaccgggacccagaccctcctatcctcaggcaccaggctgaaacaccacggccggcaggctccaggcctctcacaggcaaaaccatccctgccagacagaaatgatgctgccaaggactgcccgccagacccagttggaccttctcctcaggaccccagcttagaagcctcaggcccatcccccaagccagcaggagtggacatctctgaagcacctcagacctcttctccctgcccatctgctgacattgacatgaagacaatggagactgcagagaaactggctagatttgttgctcaggtgggaccagagatcgaacaattcagcatagaaaacagcaccgataaccctgacctgtggtttctacatgaccaaaatagttctgctttcaaattctatcgaaagaaagtgtttgaactatgtccatcaatttgtttcacgtcatctccgcacaaccttcacactggtggtggtgacaccacgggttctcaggagagccccgtggacctcatggaaggggaagcagagtttgaagacgagccccctccgcgggaggctgagctggagagcccagaggtgatgcctgaggaggaggacgaggacgatgaggatgggggagaggaggcccccgctcctggaggggcgggcaagtctgagggcagcacccctgccgacggccttcccggcgaggctgccgaggacgacctggctggagcacctgccttgtcacaggcctcctcaggtacctgcttccctcggaagaggatcagcagcaagtcattgaaggttggcatgattccagctcccaagagagtgtgtctcatccaggagccaaaagtccatgaaccagttcgaattgcctatgacaggcctcggggtcgtcccatgtccaaaaagaagGTTGGGCCCGAAGGCATCCTGCAGAACGGGGCTGTGGACGACAGTGTAGCCAAGACCAGCCAGTTGTTGGCTGAGTTGAACTTCGAGGAAGATGAAGAAGACACCTATTACACGAAGGACCTCCCCATACACGCCTGCAGTTACTGTGGAATACACGATCCTGCCTGCGTGGTTTACTGTAATACCAGCAAGAAGTGGTTCTGCAACGGACGTGGAAATACTTCTGGCAGCCACATTGTAAATCACCTTGTGAGGGCAAAATGCAAAGAGGTGACCCTGCACAAGGACGGGCCCCTGGGGGAGACAGTCCTGGAGTGCTACAACTGCGGCTGTCGCAACGTCTTCCTCCTCGGCTTCATCCCGGCCAAAGCTGACTCAGTGGTGGTGCTGCTGTGCAGGCAGCCCTGTGCCAGCCAGAGCAGCCTCAAGGACATCAACTGGGACAGCTCGCAGTGGCAGCCGCTGATCCAGGACCGCTGCTTCCTGTCCTGGCTGGTCAAGATCCCCTCCGAGCAGGAGCAGCTGCGGGCACGCCAGATCACGGCACAGCAGATCAACAAGCTGGAGGAGCTGTGGAAGGAAAACCCTTCTGCCACGCTGGAGGACCTGGAGAAGCCGGGGGTGGACGAGGAGCCGCAGCATGTCCTCCTGCGGTACGAGGACGCCTACCAGTACCAGAACATATTCGGGCCCCTGGTCAAGCTGGAGGCCGACTACGACAAGAAGCTGAAGGAGTCCCAGACTCAAGATAACATCACTGTCAGGTGGGACCTGGGCCTTAACAAGAAGAGAATCGCCTACTTCACTTTGCCCAAGACTGACTCTGGTAATGAGGATTTAGTCATAATTTGGTTAAGAGACATGCGGCTCATGCAGGGGGATGAGATATGCCTGCGGTACAAAGGGGACCTTGCGCCCCTGTGGAAAGGGATCGGCCACGTCATCAAGGTCCCTGATAATTATGGCGATGAGATCGCCATTGAGCTGCGGAGCAGCGTGGGTGCACCTGTGGAGGTGACTCACAACTTCCAGGTGGATTTTGTGTGGAAGTCGACCTCCTTTGACAGGATGCAGAGCGCATTGAAAACGTTTGCCGTGGATGAGACCTCGGTGTCTGGCTACATCTACCACAAGCTGTTGGGCCACGAGGTGGAGGACGTAATCATCAAGTGCCAGCTGCCCAAGCGCTTCACGGCGCAGGGCCTCCCCGACCTCAACCACTCCCAGGTTTATGCCGTGAAGACTGTGCTGCAAAGACCACTGAGCCTGATCCAGGGCCCGCCAGGCACGGGGAAGACGGTGACGTCGGCCACCATCGTCTACCACCTGGCCCGGCAAGGCAACGGGCCGGTGCTGGTGTGTGCTCCGAGCAACATCGCCGTGGACCAGCTAACGGAGAAGATCCACCAGACGGGGCTAAAGGTCGTGCGCCTCTGCGCCAAGAGCCGTGAGGCCATCGACTCCCCGGTGTCTTTTCTGGCCCTGCACAACCAGATCAGGAACATGGACAGCATGCCTGAGCTGCAGAAGCTGCAGCAGCTGAAAGACGAGACTGGGGAGCTGTCGTCTGCCGACGAGAAGCGGTACCGGGCCTTGAAGCGCACCGCAGAGAGAGAGCTGCTGATGAACGCAGATGTCATCTGCTGCACATGTGTGGGCGCCGGTGACCCGAGGCTGGCCAAGATGCAGTTCCGCTCCATTTTAATCGACGAAAGCACCCAGGCCACCGAGCCGGAGTGCATGGTTCCCGTGGTCCTCGGGGCCAAGCAGCTGATCCTTGTAGGCGACCACTGCCAGCTGGGCCCAGTGGTGATGTGCAAGAAGGCGGCCAAGGCCGGGCTGTCACAGTCGCTCTTCGAGCGCCTGGTGGTGCTGGGCATCCGGCCCATCCGCCTGCAGGTCCAGTACCGGATGCACCCTGCACTCAGCGCCTTCCCATCCAACATCTTCTACGAGGGCTCCCTCCAGAATGGTGTCACTGCAGCGGATCGTGTGAAGAAGGGATTTGACTTCCAGTGGCCCCAACCCGATAAACCGATGTTCTTCTACGTGACCCAGGGCCAAGAGGAGATTGCCAGCTCGGGCACCTCCTACCTGAACAGGACCGAGGCTGCGAACGTGGAGAAGATCACCACGAAGTTGCTGAAGGCAGGCGCCAAGCCGGACCAGATTGGCATCATCACGCCCTACGAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGCGGCTCCCTGCACACCAAGCTCTACCAGGAGGTGGAGATCGCCAGTGTGGACGCCTTTCAGGGACGCGAGAAGGACTTCATCATCCTGTCCTGTGTGCGGGCCAACGAGCACCAAGGCATTGGCTTTTTAAATGACCCCAGGCGTCTGAACGTGGCCCTGACCAGAGCAAGGTATGGCGTCATCATTGTGGGCAACCCGAAGGCACTATCAAAGCAGCCGCTCTGGAACCACCTGCTGAACTACTATAAGGAGCAGAAGGTGCTGGTGGAGGGGCCGCTCAACAACCTGCGTGAGAGCCTCATGCAGTTCAGCAAGCCACGGAAGCTGGTCAACACTATCAACCCGGGAGCCCGCTTCATGACCACAGCCATGTATGATGCCCGGGAGGCCATCATCCCAGGCTCCGTCTATGATCGGAGCAGCCAGGGCCGGCCTTCCAGCATGTACTTCCAGACCCATGACCAGATTGGCATGATCAGTGCCGGCCCTAGCCACGTGGCTGCCATGAACATTCCCATCCCCTTCAACCTGGTCATGCCACCCATGCCACCGCCTGGCTATTTTGGACAAGCCAACGGGCCTGCTGCAGGGCGAGGCACCCCGAAAGGCAAGACTGGTCGTGGGGGACGCCAGAAGAACCGCTTTGGGCTTCCTGGACCCAGCCAGACTAACCTCCCCAACAGCCAAGCCAGCCAGGATGTGGCGTCACAGCCCTTCTCTCAGGGCGCCCTGACGCAGGGCTACATCTCCATGAGCCAGCCTTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCGGAGCTGTCCCAGGACAGTTACCTTGGTGACGAGTTTAAATCACAAATCGACGTGGCGCTCTCACAGGACTCCACGTACCAGGGAGAGCGGGCTTACCAGCATGGCGGGGTGACGGGGCTGTCCCAGTATTAA MSPPRAAAAAGQNNMAARRITQETFDAVLQEKAKRYHMDASGEAVSETLQFKAQDLLRAVPRSRAEMYDDVHSDGRYSLSGSVAHSRDAGREGLRSDVFPGPSFRSSNPSISDDSYFRKECGRDLEFSHSDSRDQVIGHRKLGHFRSQDWKFALRGSWEQDFGHPVSQESSWSQEYSFGPSAVLGDFGSSRLIEKECLEKESRDYDVDHPGEADSVLRGGSQVQARGRALNIVDQEGSLLGKGETQGLLTAKGGVGKLVTLRNVSTKKIPTVNRITPKTQGTNQIQKNTPSPDVTLGTNPGTEDIQFPIQKIPLGLDLKNLRLPRRKMSFDIIDKSDVFSRFGIEIIKWAGFHTIKDDIKFSQLFQTLFELETETCAKMLASFKCSLKPEHRDFCFFTIKFLKHSALKTPRVDNEFLNMLLDKGAVKTKNCFFEIIKPFDKYIMRLQDRLLKSVTPLLMACNAYELSVKMKTLSNPLDLALALETTNSLCRKSLALLGQTFSLASSFRQEKILEAVGLQDIAPSPAAFPNFEDSTLFGREYIDHLKAWLVSSGCPLQVKKAEPEPMREEEKMIPPTKPEIQAKAPSSLSDAVPQRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQRMSENLRGADQKPTSADCAVRAMLYSRAVRNLKKKLLPWQRRGLLRAQGLRGWKARRATTGTQTLLSSGTRLKHHGRQAPGLSQAKPSLPDRNDAAKDCPPDPVGPSPQDPSLEASGPSPKPAGVDISEAPQTSSPCPSADIDMKTMETAEKLARFVAQVGPEIEQFSIENSTDNPDLWFLHDQNSSAFKFYRKKVFELCPSICFTSSPHNLHTGGGDTTGSQESPVDLMEGEAEFEDEPPPREAELESPEVMPEEEDEDDEDGGEEAPAPGGAGKSEGSTPADGLPGEAAEDDLAGAPALSQASSGTCFPRKRISSKSLKVGMIPAPKRVCLIQEPKVHEPVRIAYDRPRGRPMSKKKVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31890 SUPT7L::MED31 ENSG00000119760.16::ENSG00000108590.11 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1708 FALSE NA FALSE NA SUPT7L ENSG00000119760.16 protein_coding - - chr2:27650809-27663840:- chr2:27657345:- chr2:27873676-27886707:- chr2:27880212:- MED31 ENSG00000108590.11 protein_coding - - chr17:6643311-6651634:- chr17:6644659:- chr17:6546631-6554954:- chr17:6547979:- chr2:27656116,chr2:27656118 chr17:6644776,chr17:6644775 NA NA chr2:27878983,chr2:27878985 chr17:6548096,chr17:6548095 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Bromo_TP|151-228|4.6e-26^Bromo_TP|243-254|0.15 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr17] 46 20 46 20 ONLY_REF_SPLICE YES_LDAS 0.4867 GT 1.9656 AG 1.8892 ENST00000337768.10 1-744 ENST00000225728.8 204-396 chr2|-|[2]27657345-27657669[2]|[1]27660984-27661388[2]|[1]27662179-27662192[0]<==>chr17|-|[2]6644467-6644659[2] atgaatctgcaaagatactggggagagataccaatatcatcaagccagaccaacagaagttccttcgatttgctcccacgggagttccgtctggtggaagtccatgacccacccctgcaccaaccctcagccaacaagccgaagccccccactatgctggacatcccctcagagccatgtagtctcaccatccatacgattcagttgattcagcacaaccgacgtcttcgcaaccttattgccacagctcaggcccagaatcagcagcagacagaaggtgtaaaaactgaagagagtgaacctcttccctcgtgccctgggtcacctcctctccctgatgacctcctgcctttagattgtaagaatcccaatgcaccattccagatccggcacagtgacccagagagtgacttttatcgtgggaaaggggaacctgtgactgaactcagctggcactcctgtcggcagctcctctaccaggcagtggccacaatcctggcccacgcgggctttgactgtgctaatgagagtgtcctggagaccctaactgatgtggcacatgagtattgccttaagtttaccaagttgctgcgttttgctgtggaccgggaggcccggctgggacagactccttttcctgatgtgatggagcaggtattccatgaagtgggtattggcagtgtgctctccctccagaagttctggcagcaccgcatcaaggactatcacagttacatgctacagGTACCCTCAGTGTTTACACATGTTAGAGCTGCTCCAATATGAACACTTCCGAAAGGAGCTGGTGAATGCTCAGTGTGCGAAATTTATTGATGAACAGCAGATTCTACATTGGCAGCACTATTCCCGGAAGCGGATGCGCCTTCAGCAAGCCTTGGCAGAGCAGCAACAGCAAAATAACACATCGGGAAAATGA MNLQRYWGEIPISSSQTNRSSFDLLPREFRLVEVHDPPLHQPSANKPKPPTMLDIPSEPCSLTIHTIQLIQHNRRLRNLIATAQAQNQQQTEGVKTEESEPLPSCPGSPPLPDDLLPLDCKNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREARLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHSYMLQVPSVFTHVRAAPI*TLPKGAGECSVCEIY**TADSTLAALFPEADAPSASLGRAATAK*HIGKM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31893 DPY19L3::ZNF507 ENSG00000178904.19::ENSG00000168813.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1707 FALSE NA FALSE NA DPY19L3 ENSG00000178904.19 protein_coding + + chr19:32405543-32485895:+ chr19:32411372:+ chr19:32896449-32976801:+ chr19:32902278:+ ZNF507 ENSG00000168813.17 protein_coding + + chr19:32345594-32387667:+ chr19:32382467:+ chr19:32836500-32878573:+ chr19:32873373:+ chr19:32414489,chr19:32414489 chr19:32374494,chr19:32374491 NA NA chr19:32905395,chr19:32905395 chr19:32865400,chr19:32865397 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Dpy19-PARTIAL|56-237~|7.1e-264 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.02Mb];LOCAL_REARRANGEMENT:+:[17876] 34 32 33 32 ONLY_REF_SPLICE YES_LDAS 0.4792 GT 1.5329 AG 1.7819 ENST00000392250.7 1-237 ENST00000311921.8 2361-2862 chr19|+|[0]32408254-32408356[0]|[1]32411239-32411372[2]<==>chr19|+|[2]32382467-32382601[1]|[2]32382717-32383083[2] atgatgtccatccggcaaagaagagaaataagagccacagaagtttctgaagactttccagcccaagaagaaaatgtgaagttggaaaataaattgccatctggttgtaccagtagaagattatggaagattttgtcattgacaattggtggaaccattgccctttgcattggacttcttacatctgtctaccttgccacgttacatgaaaatgatttatggttttctaatattaagATGCTCTCTGTGTGGGTATGTGTGTAGCCATCCTCCTTCTTTGAAGTCTCATATGTGGAAACATGCAAGTGACCAAAATTACAACTACGAACAAGTAAACAAGGCTATTAACGACGCGATTTCACAAAGTGGCAGAGTTCTGGGGAAATCCCCTGGAAAGACTCAATTAAAGAGCAGTGAAGAGAGTGCAGATCCCGTCACTGGAAGTTCAGAAAATGCAGTGTCATCTTCAGAACTGATGTCCCAGACTCCCAGTGAAGTTCTGGGTACCAACGAGAATGAGAAACTGAGCCCTACAAGTAATACCTCATATAGTTTAGAAAAAATCTCCAGTCTGGCCCCTCCTAGCATGGAGTACTGCGTTTTACTCTTCTGCTGTTGTATTTGTGGTTTTGAATCAACCAGCAAAGAAAACCTCTTGGATCATATGAAAGAGCACGAGGGTGAAATTGTAAACATCATCCTGAATAAGGACCACAATACAGCTCTAAACACAAATTAG MMSIRQRREIRATEVSEDFPAQEENVKLENKLPSGCTSRRLWKILSLTIGGTIALCIGLLTSVYLATLHENDLWFSNIKMLSVWVCV*PSSFFEVSYVETCK*PKLQLRTSKQGY*RRDFTKWQSSGEIPWKDSIKEQ*RECRSRHWKFRKCSVIFRTDVPDSQ*SSGYQRE*ETEPYK*YLI*FRKNLQSGPS*HGVLRFTLLLLYLWF*INQQRKPLGSYERARG*NCKHHPE*GPQYSSKHKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31895 TTC28-AS1::UNC79 ENSG00000235954.9::ENSG00000133958.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1713 TRUE 3129 TRUE 1191 TTC28-AS1 ENSG00000235954.9 lncRNA + + chr22:27919376-28008581:+ chr22:27935230:+ chr22:28315364-28404569:+ chr22:28331218:+ UNC79 ENSG00000133958.14 protein_coding + + chr14:93333219-93707876:+ chr14:93673351:+ chr14:93799565-94174222:+ chr14:94139697:+ chr22:27947798,chr22:27947873,chr22:27947873,chr22:27947768 chr14:93669535,chr14:93669535,chr14:93669532,chr14:93669688 NA NA chr22:28343786,chr22:28343861,chr22:28343861,chr22:28343756 chr14:94135881,chr14:94135881,chr14:94135878,chr14:94136034 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["UNC79:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr14] 22 8 22 4.51 ONLY_REF_SPLICE YES_LDAS 0.1955 GT 1.9086 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3199-2 chr22:27920526-27920611:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31896 TTC28::PITPNB ENSG00000100154.15::ENSG00000180957.19 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1710 FALSE NA FALSE NA TTC28 ENSG00000100154.15 protein_coding - - chr22:27978014-28679840:- chr22:28629552:- chr22:28374002-29075828:- chr22:29025540:- PITPNB ENSG00000180957.19 protein_coding - - chr22:27851669-27920134:- chr22:27860241:- chr22:28247657-28316122:- chr22:28256229:- chr22:28536367,chr22:28536369 chr22:27862829,chr22:27862829 NA NA chr22:28932355,chr22:28932357 chr22:28258817,chr22:28258817 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TPR_MalT|62-90|0.12^TPR_2|67-91|0.0037^TPR_12|69-87|0.18^TPR_7|71-91|4.6^TPR_19|71-112|6.4e-05^TPR_1|72-91|0.001^TPR_8|72-91|0.24^TPR_14|72-91|0.12^TPR_16|72-118|0.043^TPR_11|72-104|4.7e-07^TPR_9|73-114|0.094^TPR_17|80-112|6.2e-06^DUF3856|82-150|0.00056^TPR_12|93-154|5.6e-05^TPR_2|94-124|4.8e-05^TPR_1|95-124|0.00017^TPR_8|95-118|0.39^TPR_10|95-118|0.76^TPR_14|99-133|0.29^TPR_9|100-159|0.00068^TPR_7|101-112|6.2^TPR_16|101-158|7.2e-05^TPR_11|101-139|0.034^TPR_17|121-146|0.00052^TPR_1|126-158|6.5e-06^TPR_2|126-158|3e-06^TPR_8|127-158|0.015^TPR_7|128-159|0.27^TPR_14|128-167|0.00048^TPR_6|128-159|0.001^TPR_4|132-149|0.38^TPR_10|133-149|0.55^TPR_19|140-172|9.3e-05^TPR_14|203-226|4.7^TPR_MalT|232-343|0.049^DUF3856|237-254|6.7^TPR_12|238-298|5.7e-07^TPR_7|238-270|0.00077^TPR_2|238-261|2^TPR_10|238-266|0.035^TPR_8|239-253|0.13^Rapsyn_N|263-309|0.028^TPR_12|274-341|8.1e-11^TPR_1|275-294|9.9e-05^TPR_2|275-294|0.0075^TPR_8|275-294|0.056^TPR_17|275-294|2.2^TPR_16|275-294|0.44^TPR_7|276-311|0.00037^TPR_10|279-298|0.066^TPR_6|280-294|9.5^TPR_11|281-296|0.024^ANAPC5|286-350|0.017^DUF3856|289-339|2.2^TPR_MalT-PARTIAL|305-381~|3.3e-09^RPN7|311-341|0.033^TPR_16|311-335|5^TPR_12-PARTIAL|315-381~|5.7e-13^TPR_10|315-345|0.0016^TPR_17|315-334|2.1^TPR_7|316-349|6.2e-07^TPR_1|316-343|0.00046^TPR_2|316-336|0.29^TPR_8|316-345|0.049^TRAPPC9-Trs120-PARTIAL|320-381~|0.16^TPR_11|321-338|0.12^RPN7-PARTIAL|347-381~|0.013^Rapsyn_N-PARTIAL|353-381~|0.17^TPR_9-PARTIAL|353-381~|0.091^TPR_1-PARTIAL|354-381~|4.7e-07^TPR_2|355-376|0.0096^TPR_12-PARTIAL|357-381~|2.3e-14^TPR_7-PARTIAL|357-381~|2.9e-08^TPR_10-PARTIAL|357-381~|0.0021^TPR_17|357-375|1.9^TPR_8-PARTIAL|358-381~|0.0015^TPR_4|359-374|8.3^TPR_14-PARTIAL|360-381~|0.95^TPR_6|360-375|1.3^TPR_19|361-379|0.94^TPR_11-PARTIAL|361-381~|0.0032^RPN7-PARTIAL|379-381~|0.0055 none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.06Mb];NEIGHBORS[57880] 22 20 22 20 ONLY_REF_SPLICE YES_LDAS 0.3097 GT 1.8256 AG 1.7819 ENST00000397906.7 1-381 ENST00000320996.14 535-819 chr22|-|[2]28629552-28629830[0]|[2]28679622-28679723[0]<==>chr22|-|[2]27853613-27853663[0]|[2]27858387-27858509[0]|[2]27860131-27860241[0] atggagcagtcgccgccgccggcgcccgagccgacccaagggccgacccccgcaaggagccgaaggcggcgggagccagagtcgccgccggcgtcggcgccgattcctctctttggtgctgacactattggccagagaagtcctgatggaccggtactgagcaaagctgaatttgttgagaaagttcgtcagagtaatcaggcctgtcatgatggagatttccacacagctattgttctgtataatgaagccctggctgttgaccctcagaactgcatcttatacagcaatagatctgcagcctacatgaaaatccagcagtatgacaaggcactggatgatgcaatcaaagctcgacttctcaatcccaagtggccaaagAAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAAACGGATATTTACAAACTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA MEQSPPPAPEPTQGPTPARSRRRREPESPPASAPIPLFGADTIGQRSPDGPVLSKAEFVEKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKKELANSPDCPQMCAYKLVTIKFKWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETLRNQGQVRGTSAASDE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31898 ENSG00000226266::PLA2R1 ENSG00000226266.8::ENSG00000153246.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1712 FALSE NA FALSE NA ENSG00000226266 ENSG00000226266.8 lncRNA - - chr2:159670708-159712444:- chr2:159710717:- chr2:160527219-160568955:- chr2:160567228:- PLA2R1 ENSG00000153246.13 protein_coding - - chr2:159932006-160062615:- chr2:159987358:- chr2:160788517-160919126:- chr2:160843869:- chr2:159698729,chr2:159698732 chr2:159993302,chr2:159993302 NA NA chr2:160555240,chr2:160555243 chr2:160849813,chr2:160849813 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 20 13 20 13 ONLY_REF_SPLICE YES_LDAS 0.2433 GT 1.4295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31899 ENSG00000285417::LINC02331 ENSG00000285417.1::ENSG00000235269.2 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1705 FALSE NA FALSE NA ENSG00000285417 ENSG00000285417.1 transcribed_unitary_pseudogene + + chr1:206035253-206062257:+ chr1:206053265:+ chr1:206279114-206306115:+ chr1:206279114:+ LINC02331 ENSG00000235269.2 lncRNA - - chr14:53685139-53850882:- chr14:53686608:- chr14:54151857-54317600:- chr14:54153326:- chr1:206054944,chr1:206054943,chr1:206054927,chr1:206054970,chr1:206054966 chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365,chr14:53713365 NA NA chr1:206286427,chr1:206286428,chr1:206286444,chr1:206286401,chr1:206286405 chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083,chr14:54180083 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 18 19 16.29 ONLY_REF_SPLICE YES_LDAS 0.2602 GT 1.9656 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31901 NARS2::GAB2 ENSG00000137513.11::ENSG00000033327.13 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NARS2 ENSG00000137513.11 protein_coding - - chr11:78435620-78575194:- chr11:78465876:- chr11:78146666-78286239:- chr11:78176922:- GAB2 ENSG00000033327.13 protein_coding - - chr11:78215293-78418348:- chr11:78218756:- chr11:77926339-78129394:- chr11:77929802:- chr11:78465082,chr11:78465112 chr11:78219329,chr11:78219354 NA NA chr11:78176128,chr11:78176158 chr11:77930375,chr11:77930400 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GAB2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.02Mb];NEIGHBORS[17613] 16 8 16 8 INCL_NON_REF_SPLICE YES_LDAS 0.177 GT 1.7465 AG 1.5219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31902 RABGAP1L::CACYBP ENSG00000152061.24::ENSG00000116161.18 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1716 FALSE NA FALSE NA RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174752354:+ chr1:174128548-174964445:+ chr1:174721492:+ CACYBP ENSG00000116161.18 protein_coding + + chr1:174999163-175012027:+ chr1:175009923:+ chr1:174968300-174981163:+ chr1:174979059:+ chr1:174799466,chr1:174799464 chr1:175009584,chr1:175009579 NA NA chr1:174768604,chr1:174768602 chr1:174978720,chr1:174978715 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PID|136-252|4.6e-08^PTB|174-238|6.9e-07^DUF3694|290-421|3.2e-34^RabGAP-TBC|542-744|4.4e-67^RabGAP-TBC|880-890|2.1^PID|965-999|0.17^PTB|981-1007|2.9 none ["RABGAP1L:Oncogene"];["Klijn_CellLines","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.00Mb];NEIGHBORS[3855] 16 9 16 9 ONLY_REF_SPLICE YES_LDAS 0.1844 GT 1.9656 AG 1.9656 ENST00000681986.1 1-2211 ENST00000367679.7 531-687 chr1|+|[0]174219158-174219295[2]|[0]174220972-174221164[0]|[1]174231145-174231355[1]|[2]174241483-174241657[2]|[0]174250475-174250632[1]|[2]174252480-174252590[1]|[2]174272414-174272480[2]|[0]174275833-174275935[0]|[1]174278613-174278779[2]|[0]174304986-174305127[0]|[1]174370979-174371072[1]|[2]174393995-174394145[2]|[0]174637375-174637488[2]|[0]174683522-174683596[2]|[0]174699525-174699650[2]|[0]174702113-174702256[2]|[0]174752313-174752354[2]<==>chr1|+|[2]175009923-175010079[2] atggaggtcagagcttcattacagaaggttagtggatcatctgattctgtggctacaatgaacagtgaagaatttgttttggttcctcagtatgcagatgataattctacaaaacatgaagaaaaacctcaactgaagatagtttctaatggtgatgaacaattggaaaaagccatggaagagattttgagagattccgagaaaaggccaagcagtcttcttgttgattgtcaaagttccagtgagatttcagaccattcgtttggagatattccagccagccaaacaaataagccatctcttcagttaattttggatccgtctaacacagaaatttctacacccagaccatcttctccaggtggactacctgaagaagatagtgttttatttaataaactgacctacttaggatgtatgaaggtttcttccccacgtaatgaagtagaggctttacgggcaatggcaaccatgaaatcttccagtcaatacccctttcctgttaccctgtatgtaccaaatgttccagaaggttctgtgagaattatagaccaatccagcaatgtggagatagcatcttttccaatctataaggtgttattctgtgcacgtggacatgacggaacaacagagagcaattgctttgcatttacagagagttcccatggttcggaagaatttcagatacatgttttctcctgtgaaattaaagaggcagtaagcagaattttgtacagtttctgtacagcattcaaacgttcttccagacaagtgtctgatgttaaagactcagttattcctacccccgacagtgatgtgtttaccttcagtgtctccttggaggtaaaagaagacgatggaaaaggaaactttagccctgtgcctaaggatagagataaattttatttcaaattaaagcaaggaatagagaagaaggttgtgattacagtgcagcaactttctaacaaagaattagctattgaaagatgttttggaatgttattaagcccaggtcgaaacgtgaagaacagtgacatgcatttactggatatggaatccatgggaaagagctatgatgggagagcttatgtcatcactggcatgtggaaccccaatgcaccagtatttctggcacttaacgaggaaaccccaaaagataagcaagtatacatgactgtggcagtggatatggtagtcacagaggtggtggagcctgttcgctttctcctggagacagtagtccgtgtgtaccctgcaaatgagcgattttggtatttcagcagaaagactttcacagagactttcttcatgagattgaaacagtctgagggaaaaggccataccaatgctggagatgcaatatatgaggtggtgagtctacagcgagagtctgacaaggaggaaccagtcactcctactagtggagggggtccaatgtcaccccaggatgatgaagcagaagaggagagtgataatgaactctcaagtggaacaggtgatgtgtctaaggattgtcctgagaagatcctgtattcttggggagagttgctaggaaaatggcacagtaaccttggtgcacgaccgaaagggctgtctactctggtgaagagtggtgtccctgaagcattgagggcagaggtatggcagttattggcaggctgccatgacaaccaggcaatgctggatagataccgaattcttatcacaaaggactcagcccaggagagtgttattactcgagatattcatcgtacatttcccgcacatgattactttaaagatactggaggagatggtcaagaatcgctctataagatctgcaaggcctactctgtgtatgatgaagacattgggtactgtcaagggcagtcttttcttgctgctgtattactgctgcatatgccagaggaacaagcattctgtgttttggtgaaaatcatgtacgactatggtttgagagacctctacagaaacaacttcgaagatcttcattgcaaattctaccagttggagagactaatgcaggaacagctaccggacctgcatagccatttttctgatctgaacctggaagctcatatgtatgcatcccagtggtttctcactctttttactgccaagttcccactctgcatggtgttccacatcattgacttactgctttgtgagggtttgaacataatctttcatgtagctttggctctcctaaagGAAGCCCTCCTATGACACTGAAACAGATCCTAGTGAGGGATTGATGAATGTTCTAAAGAAAATTTATGAAGATGGAGACGATGATATGAAGCGAACCATTAATAAAGCCTGGGTGGAATCAAGAGAGAAGCAAGCCAAAGGAGACACGGAATTTTGA MEVRASLQKVSGSSDSVATMNSEEFVLVPQYADDNSTKHEEKPQLKIVSNGDEQLEKAMEEILRDSEKRPSSLLVDCQSSSEISDHSFGDIPASQTNKPSLQLILDPSNTEISTPRPSSPGGLPEEDSVLFNKLTYLGCMKVSSPRNEVEALRAMATMKSSSQYPFPVTLYVPNVPEGSVRIIDQSSNVEIASFPIYKVLFCARGHDGTTESNCFAFTESSHGSEEFQIHVFSCEIKEAVSRILYSFCTAFKRSSRQVSDVKDSVIPTPDSDVFTFSVSLEVKEDDGKGNFSPVPKDRDKFYFKLKQGIEKKVVITVQQLSNKELAIERCFGMLLSPGRNVKNSDMHLLDMESMGKSYDGRAYVITGMWNPNAPVFLALNEETPKDKQVYMTVAVDMVVTEVVEPVRFLLETVVRVYPANERFWYFSRKTFTETFFMRLKQSEGKGHTNAGDAIYEVVSLQRESDKEEPVTPTSGGGPMSPQDDEAEEESDNELSSGTGDVSKDCPEKILYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKEALL*H*NRS**GIDECSKENL*RWRR*YEANH**SLGGIKREASQRRHGIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31903 CRTC1::SUGP2 ENSG00000105662.16::ENSG00000064607.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1715 FALSE NA FALSE NA CRTC1 ENSG00000105662.16 protein_coding + + chr19:18683678-18782333:+ chr19:18749875:+ chr19:18794488-18893143:+ chr19:18860685:+ SUGP2 ENSG00000064607.17 protein_coding - - chr19:18990888-19034023:- chr19:18994486:- chr19:19101697-19144832:- chr19:19105295:- chr19:18753573 chr19:18994958 NA NA chr19:18864383 chr19:19105767 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TORC_N|6-66|1.2e-28^TORC_M|164-308|1.9e-71^ACT_6|191-218|2.2^TORC_M|539-570|0.094^TORC_C-PARTIAL|575-586~|1.1e-35^ACT_6-PARTIAL|577-586~|0.00012 none ["CRTC1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.21Mb] 15 6 15 6 ONLY_REF_SPLICE YES_LDAS 0.1548 GT 1.7465 AG 1.7819 ENST00000338797.10 1-586 ENST00000600377.1 3171-3291 chr19|+|[0]18683703-18683828[2]|[0]18742910-18743026[2]|[0]18744108-18744155[2]|[0]18745823-18745960[2]|[0]18747053-18747114[1]|[2]18749781-18749875[0]<==>chr19|-|[2]18994366-18994486[2] atggcgacttcgaacaatccgcggaaattcagcgagaagatcgcgctgcacaatcagaagcaggcggaggagacggcggccttcgaggaggtcatgaaggacctgagcctgacgcgggccgcgcggctccagctccagaaatcccagtacctgcaactgggccccagccgaggccagtactatggcgggtccctgcccaacgtgaaccagatcgggagtggcaccatggacctgcccttccagcccagcggatttctgggggaggccctggcagcggctcctgtctctctgacccccttccaatcctcgggcctggacaccagccggaccacccggcaccatgggctggtggacagggtgtaccgggagcgtggccggctcggctccccacaccgccggcccctgtcagtggacaaacacggacggcaggccgacagctgcccctatggcaccatgtacctctcaccacccgcggacaccagctggagaaggaccaattctgactccgccctgcaccagagcacaatgacgcccacgcagccagaatcctttagcagtgggtcccaggacgtgcaccagaaaagagGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTCCGACAGAGGATGATGCAGATGTACAGACACAAGCGGGCCAACAAATAG MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTMDLPFQPSGFLGEALAAAPVSLTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQPESFSSGSQDVHQKRGEPPRKGKGWVLTGRSTKKTHSMCSDRG*CRCTDTSGPTN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CREB regulated transcription coactivator 1 1 Yes salivary gland mucoepidermoid epithelial oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31904 TTC28-AS1::UNC79 ENSG00000235954.9::ENSG00000133958.14 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1714 TRUE 3129 TRUE 1191 TTC28-AS1 ENSG00000235954.9 lncRNA + + chr22:27919376-28008581:+ chr22:27940171:+ chr22:28315364-28404569:+ chr22:28336159:+ UNC79 ENSG00000133958.14 protein_coding + + chr14:93333219-93707876:+ chr14:93673351:+ chr14:93799565-94174222:+ chr14:94139697:+ chr22:27947798,chr22:27947873,chr22:27947873,chr22:27947768 chr14:93669535,chr14:93669535,chr14:93669532,chr14:93669688 NA NA chr22:28343786,chr22:28343861,chr22:28343861,chr22:28343756 chr14:94135881,chr14:94135881,chr14:94135878,chr14:94136034 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["UNC79:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr14] 14 11 14 6.49 ONLY_REF_SPLICE YES_LDAS 0.151 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3199-2 chr22:27920526-27920611:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31908 LINC01876::GPD2 ENSG00000226383.7::ENSG00000115159.17 SNU119 SRR8615939 SRR8670769 OVARY carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LINC01876 ENSG00000226383.7 lncRNA - - chr2:156011530-156254950:- chr2:156150485:- chr2:156868042-157111462:- chr2:157006997:- GPD2 ENSG00000115159.17 protein_coding + + chr2:156435290-156613735:+ chr2:156568825:+ chr2:157291802-157470247:+ chr2:157425337:+ chr2:156126222,chr2:156126242 chr2:156568113,chr2:156568093 NA NA chr2:156982734,chr2:156982754 chr2:157424625,chr2:157424605 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 6 14 6 8.44 ONLY_REF_SPLICE YES_LDAS 0.1064 GT 1.7968 AG 1.3996 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31911 ERGIC2::CHRNA6 ENSG00000087502.19::ENSG00000147434.9 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1720 FALSE NA FALSE NA ERGIC2 ENSG00000087502.19 protein_coding - - chr12:29337352-29381189:- chr12:29366877:- chr12:29490285-29534122:- chr12:29519810:- CHRNA6 ENSG00000147434.9 protein_coding - - chr8:42752620-42796392:- chr8:42765204:- chr8:42607763-42651535:- chr8:42620347:- chr12:29363616,chr12:29363620 chr8:42766270,chr8:42766271 NA NA chr12:29516549,chr12:29516553 chr8:42621413,chr8:42621414 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ERGIC_N|13-98|3e-30^DUF3672|17-36|1.3^COPIIcoated_ERV|163-331|1e-50^DUF3672|169-200|0.00045^DUF3672|233-274|0.0039 Neur_chan_LBD-PARTIAL|~80-239|6e-82^DUF1286|234-263|0.69^DUF2417|237-343|0.00044^Neur_chan_memb|247-483|6.9e-82^DUF1286|326-355|8.4e-05^DUF2417|458-485|0.094 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr8] 67 26 67 26 ONLY_REF_SPLICE YES_LDAS 1.2205 GT 1.8323 AG 1.3996 ENST00000360150.9 1-333 ENST00000276410.7 80-1485 chr12|-|[2]29366877-29366947[1]|[0]29368241-29368287[2]|[1]29370114-29370222[1]|[0]29371528-29371633[0]<==>chr8|-|[2]42753179-42753310[0]|[2]42755846-42756824[2]|[1]42756928-42757037[0]|[2]42759069-42759113[0]|[2]42765065-42765204[1] atgaggcgactgaatcggaaaaaaactttaagtttggtaaaagagttggatgcctttccgaaggttcctgagagctatgtagagacttcagccagtggaggtacagtttctctaatagcatttacaactatggctttattaaccataatggaattctcagtatatcaagatacatggatgaagtatgaatacgaagtagacaaggatttttctagcaaattaagaattaatatagatattactgttgccatgaagtgtcaatatgttggagcggatgtattggatttagcagaaacaatggttgcatctgcagatggtttagtttatgaaccaGCTGTGTGGGCTGTGCAACTGAGGAGAGGCTCTTCCACAAACTGTTTTCTCATTACAACCAGTTCATCAGGCCTGTGGAAAACGTTTCCGACCCTGTCACGGTACACTTTGAAGTGGCCATCACCCAGCTGGCCAACGTGGATGAAGTAAACCAGATCATGGAAACCAATTTGTGGCTGCGTCACATCTGGAATGATTATAAATTGCGCTGGGATCCAATGGAATATGATGGCATTGAGACTCTTCGCGTTCCTGCAGATAAGATTTGGAAGCCCGACATTGTTCTCTATAACAATGCTGTTGGTGACTTCCAAGTAGAAGGCAAAACAAAAGCTCTTCTTAAATACAATGGCATGATAACCTGGACTCCACCAGCTATTTTTAAGAGTTCCTGCCCTATGGATATCACCTTTTTCCCTTTTGATCATCAAAACTGTTCCCTAAAATTTGGTTCCTGGACGTATGACAAAGCTGAAATTGATCTTCTAATCATTGGATCAAAAGTGGATATGAATGATTTTTGGGAAAACAGTGAATGGGAAATCATTGATGCCTCTGGCTACAAACATGACATCAAATACAACTGTTGTGAAGAGATATACACAGATATAACCTATTCTTTCTACATTAGAAGATTGCCGATGTTTTACACGATTAATCTGATCATCCCTTGTCTCTTTATTTCATTTCTAACCGTGTTGGTCTTTTACCTTCCTTCGGACTGTGGTGAAAAAGTGACGCTTTGTATTTCAGTCCTGCTTTCTCTGACTGTGTTTTTGCTGGTCATCACAGAAACCATCCCATCCACATCTCTGGTGGTCCCACTGGTGGGTGAGTACCTGCTGTTCACCATGATCTTTGTCACACTGTCCATCGTGGTGACTGTGTTTGTGTTGAACATACACTACCGCACCCCAACCACGCACACAATGCCCAGGTGGGTGAAGACAGTTTTCCTGAAGCTGCTGCCCCAGGTCCTGCTGATGAGGTGGCCTCTGGACAAGACAAGGGGCACAGGCTCTGATGCAGTGCCCAGAGGCCTTGCCAGGAGGCCTGCCAAAGGCAAGCTTGCAAGCCATGGGGAACCCAGACATCTTAAAGAATGCTTCCATTGTCACAAATCAAATGAGCTTGCCACAAGCAAGAGAAGATTAAGTCATCAGCCATTACAGTGGGTGGTGGAAAATTCGGAGCACTCGCCTGAAGTTGAAGATGTGATTAACAGTGTTCAGTTCATAGCAGAAAACATGAAGAGCCACAATGAAACCAAGGAGGTAGAAGATGACTGGAAATACGTGGCCATGGTGGTGGACAGAGTATTTCTTTGGGTATTTATAATTGTCTGTGTATTTGGAACTGCAGGGCTATTTCTACAGCCACTACTTGGGAACACAGGAAAATCTTAA MRRLNRKKTLSLVKELDAFPKVPESYVETSASGGTVSLIAFTTMALLTIMEFSVYQDTWMKYEYEVDKDFSSKLRINIDITVAMKCQYVGADVLDLAETMVASADGLVYEPAVWAVQLRRGSSTNCFLITTSSSGLWKTFPTLSRYTLKWPSPSWPTWMK*TRSWKPICGCVTSGMIINCAGIQWNMMALRLFAFLQIRFGSPTLFSITMLLVTSK*KAKQKLFLNTMA**PGLHQLFLRVPALWISPFSLLIIKTVP*NLVPGRMTKLKLIF*SLDQKWI*MIFGKTVNGKSLMPLATNMTSNTTVVKRYTQI*PILSTLEDCRCFTRLI*SSLVSLFHF*PCWSFTFLRTVVKK*RFVFQSCFL*LCFCWSSQKPSHPHLWWSHWWVSTCCSP*SLSHCPSW*LCLC*TYTTAPQPRTQCPGG*RQFS*SCCPRSC**GGLWTRQGAQALMQCPEALPGGLPKASLQAMGNPDILKNASIVTNQMSLPQARED*VISHYSGWWKIRSTRLKLKM*LTVFSS*QKT*RATMKPRR*KMTGNTWPWWWTEYFFGYL*LSVYLELQGYFYSHYLGTQENL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31915 BID::ENSG00000093100 ENSG00000015475.19::ENSG00000093100.13 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1725 FALSE NA FALSE NA BID ENSG00000015475.19 protein_coding - - chr22:17734138-17774770:- chr22:17774381:- chr22:18216904-18257536:- chr22:18257147:- ENSG00000093100 ENSG00000093100.13 lncRNA - - chr22:17787652-17811497:- chr22:17791301:- chr22:18270418-18294263:- chr22:18274067:- chr22:17758392,chr22:17758398 chr22:17793095,chr22:17793098 NA NA chr22:18241158,chr22:18241164 chr22:18275861,chr22:18275864 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BID:Oncogene"] 13 1 13 1 ONLY_REF_SPLICE YES_LDAS 0.1837 GT 1.5546 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31922 THSD4::LRRC49 ENSG00000187720.15::ENSG00000137821.12 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1726 FALSE NA FALSE NA THSD4 ENSG00000187720.15 protein_coding + + chr15:71096952-71783383:+ chr15:71256715:+ chr15:71389291-72075722:+ chr15:71549054:+ LRRC49 ENSG00000137821.12 protein_coding + + chr15:70853239-71053658:+ chr15:71049409:+ chr15:71145578-71345997:+ chr15:71341748:+ chr15:71264483,chr15:71264484 chr15:71039556,chr15:71039554 NA NA chr15:71556822,chr15:71556823 chr15:71331895,chr15:71331893 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TSP1_spondin|57-79|7.6e-07^TSP_1|58-80|2.5e-07^TSP1_ADAMTS|60-81|7e-05^TSP1_CCN|61-73|0.005^TSP1_spondin|283-306|4.4^TSP_1|290-306|5.3^TSP1_CCN|296-306|4.8^TSP1_ADAMTS|312-321|0.6^ADAMTS_CR_3|324-411|6.4e-17^TSP1_spondin|344-381|7^TSP_1|352-383|6.7^ADAMTS_spacer1|414-527|8e-33^TSP1_ADAMTS|627-676|1.8e-10^TSP_1|627-650|6.2e-05^TSP1_CCN|627-637|0.0044^TSP1_spondin|627-676|0.0075^TSP1_ADAMTS|680-736|9.6e-18^TSP_1|683-706|7e-10^TSP1_CCN|683-701|1.2e-08^TSP1_spondin|683-736|4.8e-06^TSP1_CCN|736-761|1.5e-05^TSP1_spondin|737-793|0.00048^TSP1_ADAMTS|739-793|5.7e-16^TSP_1|743-793|3.8e-10^TSP1_ADAMTS|797-850|9.4e-14^TSP1_CCN|799-818|6.8e-05^TSP_1|800-827|0.00024^TSP1_spondin|800-850|0.00023^TSP1_ADAMTS|856-912|8.4e-19^TSP_1|859-884|1.2e-07^TSP1_CCN|859-875|9.5e-06^TSP1_spondin|859-885|0.00053^TSP1_ADAMTS|916-967|9e-14^TSP1_CCN|918-936|0.0021^TSP_1|919-967|6.2e-07^TSP1_spondin|919-967|2.7e-07^PLAC|975-1005|4.2e-14^TSP1_CCN|980-992|0.37 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr15:0.04Mb];LOCAL_REARRANGEMENT:+:[43295] 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.1312 GT 1.9219 AG 1.1589 ENST00000355327.7 1-1015 ENST00000560158.6 922-1125 chr15|+|[0]71141528-71141556[1]|[2]71154863-71154932[2]|[0]71215035-71215399[1]|[2]71242649-71243096[2]|[0]71256613-71256715[0]<==>chr15|+|[0]71049409-71049612[2] atggtttcccatttcatggggtctctcagtgtcctgtgtttccttctgctgcttggattccagttcgtctgcccacagccctccactcaacacaggaaggtcccgcagcggatggcggcggagggcgcccccgaggacgacggcggcggcggcgccccgggagtgtggggcgcctggggcccctggtcggcctgctcgcgtagctgcagcggcggcgtgatggagcagacgcggccctgcctgccccgctcctaccgcctgcgcggcggccagcggcctggcgcccctgcgcgcgccttcgcggaccacgtggtgtcggcggtgcgcacgtcggtgccactgcaccggagccgcgacgagacgccagcgctggccggtacggacgccagccgccagggccccacggtgctgcgaggcagccggcacccacagccccagggcctcgaagtcactggggacagaaggagcaggacccgtggtaccattggccctggcaagtatggctatggtaaggccccatatatcttaccactgcagacagacactgcacacacgccacagaggctccggagacagaagctctcatcccgccattccaggtcccagggagcatcttctgctaggcatggctacagttcaccagcccaccaggtcccccaacatgggcctttgtaccaaagtgacagtggccctcgctctggactgcaggctgcggaggcccccatctaccagctacctttgacccatgatcaaggctaccctgcagcttcaagtctctttcacagcccagaaacaagcaacaaccacggtgtggggacccatggggcaactcagagcttctctcagcctgcccgatctacagcaatctcatgcatcggggcctatcggcagtacaagctgtgcaacaccaacgtatgtccagaaagcagtagaagtatccgggaggtacagtgtgcatcctacaacaacaagccattcatgggccggttttatgagtgggaaccatttgcagaagGAAATAAAGGAAAAGAAGAAATTCTGTAAAACATATATAGAAGACCTTGTGAAGGAAGCCACAGAAATCAACATGAAAAATGAGGCTTTGCAGAAGCTTTGGCCACAGATGTTCATTGAGCTTGTTAGGGATGCAGTCATAGAAATTCGCAATAAAAATTCCTATATGAAGCTCTGCCTACAGCAGATAACAGACCAAAAATAA MVSHFMGSLSVLCFLLLLGFQFVCPQPSTQHRKVPQRMAAEGAPEDDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFADHVVSAVRTSVPLHRSRDETPALAGTDASRQGPTVLRGSRHPQPQGLEVTGDRRSRTRGTIGPGKYGYGKAPYILPLQTDTAHTPQRLRRQKLSSRHSRSQGASSARHGYSSPAHQVPQHGPLYQSDSGPRSGLQAAEAPIYQLPLTHDQGYPAASSLFHSPETSNNHGVGTHGATQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIREVQCASYNNKPFMGRFYEWEPFAEGNKGKEEIL*NIYRRPCEGSHRNQHEK*GFAEALATDVH*AC*GCSHRNSQ*KFLYEALPTADNRPKI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,BREAST,BREAST,CERVIX,BREAST,BREAST,BREAST no_match 71447271,71389345,71389345,71507738,71704162|71704162|71704162|71549054,71447271|71447271|71447271|71447271|71433895|71447271,71447271|71447271|71433895 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE 71341748,71256124,71329518,71256124,71185923|71229100|71165247|71185923,71272440|71276433|71300718|71329518|71256124|71302146,71329518|71341748|71329518 TRUE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE|FALSE|FALSE|FALSE|FALSE,FALSE|TRUE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY In-frame,5UTR-CDS,5UTR-CDS,In-frame,In-frame,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31924 ZDHHC11B::CEP72 ENSG00000206077.14::ENSG00000112877.8 NCIH1437 SRR8615944 SRR8652147 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZDHHC11B ENSG00000206077.14 protein_coding - - chr5:710355-784729:- chr5:730434:- chr5:710470-784844:- chr5:730549:- CEP72 ENSG00000112877.8 protein_coding + + chr5:612340-667168:+ chr5:618990:+ chr5:612455-667283:+ chr5:619105:+ chr5:718154,chr5:718158 chr5:614076,chr5:614072 NA NA chr5:718269,chr5:718273 chr5:614191,chr5:614187 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DHHC|66-84|0.084^DHHC|122-272|2.4e-32 LRR_9-PARTIAL|~83-156|4.8e-12^LRR_8-PARTIAL|~83-86|7.3e-08^LRR_8-PARTIAL|~83-103|5.2e-08^LRR_4-PARTIAL|~83-92|1.3e-08^LRR_1-PARTIAL|~83-91|0.051^LRR_6-PARTIAL|~83-89|0.2^LRR_4|126-135|4.2^Dynactin_p22|444-523|0.39^COG5_N|446-511|0.032^CCDC93_CC|449-632|0.00011^YabA|452-500|0.032^DUF1664|458-490|2.4^HIP1_clath_bdg|461-540|0.0011^ApoLp-III|462-520|0.007^IFT57|464-571|0.00035^Syntaxin-6_N|470-525|0.047^Filament|473-540|0.00023^Filament|474-625|0.00067^CENP-F_leu_zip|478-544|0.0033^EzrA|480-543|0.094^DUF4407|482-619|3.1e-05^IclR|482-523|0.0041^ADIP|483-540|0.00015^SlyX|484-526|0.67^FlaF|486-573|0.003^Dynactin_p22|486-627|0.014^COG3_N|487-522|0.073^DUF1664|489-572|0.00089^Takusan|491-528|9.9e-05^COG5_N|493-592|0.0038^YabA|497-545|0.00051^DUF6376|497-543|0.37^COG3_N|510-608|4.8e-05^ApoLp-III|529-618|0.005^ADIP|545-631|0.16^SlyX|545-581|0.037^CENP-F_leu_zip|550-628|0.052^DUF6376|560-631|1.6e-05^YabA|570-629|0.0067^IFT57|577-629|0.34^FlaF|578-613|3.6^Takusan|578-607|4.9^EzrA|579-631|0.00021^DUF1664|580-619|0.031^Syntaxin-6_N|580-632|0.0092^COG5_N|582-630|0.31^HIP1_clath_bdg|584-631|0.17^LRR_9|587-611|1.8^IclR|588-616|0.03^SlyX|597-632|0.004 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.04Mb];LOCAL_INVERSION:-:+:[43192] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1706 GT 1.9329 AG 1.9656 ENST00000508859.8 1-1058 ENST00000264935.6 83-1944 chr5|-|[1]730434-730468[0]|[2]733752-733839[2]|[1]741594-741628[0]|[2]745183-745298[1]|[0]748404-748559[1]|[0]751133-751257[2]|[1]754998-755099[2]|[1]755966-756144[0]|[2]766698-766919[0]<==>chr5|+|[1]618990-619117[2]|[0]620069-620261[0]|[1]624471-624579[1]|[2]633769-633947[0]|[1]635372-635584[0]|[1]637517-637818[2]|[0]639089-639224[0]|[1]640408-640604[2]|[0]644299-644425[0]|[1]647805-647916[1]|[2]652988-653153[2] atggacacccgctccgggagccagtgttccgtcaccccagaagccatacgcaacaatgaagagctggtcttgccgccccgcatctccagagtgaacggctggtcgttacccctgcactacttccgggtggtgacttgggctgtcttcgttggcctttccttggccaccttcaggatcttcattcccctcctgcctcactcgtggaaatacatcgcctatgtggtgaccggggggatcttctcgttccacctcgtcgtccacctgatcgcgtcctgcatcgacccggccgactccaatgtcagactcatgaagaactattctcagcccatgcccctcttcgacagatcaaaacatgcacacgtgatccagaatcagttctgccacctgtgcaaggtcaccgtgaacaagaaaaccaaacactgcatttcctgcaataagtgtgtgtccggcttcgaccaccactgcaaatggatcaacaactgcgtgggaagccggaattattggttcttcttcagcactgtggcctcggccacagctggcatgctctgcctgatcgccatcctgctgtatgtcctcgtccagtacctcgtgaaccccagggtgctccgcacggaccccaggtatgaagatgtcaagaatatgaacacgtggctgctgttcctccccctgttcccggtgcaggtgcagactctgatagtcgtgatcatcaggatgctcgtgctcctgctggaccttcttggcttggtgcagctgggccagctgctcatcttccacatctacctgaaggccaagaagatgaccacctttgagtatctcattaatacccgcaaagaagagagttcaaaacatcaagcagtgaggaaagatccatacgtgcaaatggacaaaggatttctccagcaaggagctggcgccctgggctcatctgcacagggagtcaaggccaagagctccctgctgatttacaaatgcccatgtcacttctgcacttcagtaaaccaggacggggattcgaaggcacaggaagcagatgatgccccgagtacatctacacttggCTGAGCTTCAGTCATTGTCTATTCCTGGAACTTACCAAGAGAAGATCACCCACCTGGGACATTCTCTGATGAGTTTAACAGGTCTGAAATCTTTGGATCTCTCGCGCAACTCCTTGGTTAGTCTGGAGGGCATTCAGTACCTGACTGCATTGGAGAGTCTCAATCTCTACTACAACTGCATCTCCTCGTTGGCAGAAGTGTTTCGGCTCCACGCCTTAACCGAGCTCGTGGATGTGGACTTCCGGCTGAACCCCGTGGTGAAGGTTGAGCCTGACTACCGCCTTTTTGTTGTGCACCTGCTCCCCAAGCTCCAGCAGCTGGACGATCGCCCCGTGAGAGCAAGCGAGCGGAAGGCTTCCCGACTGCATTTTGCATCAGAGGACTCACTCGACTCCAAAGAGAGCGTCCCAGCTTCTTTGAAAGAGGGCAGACCACACCACCCCAGAGCCAAGTGCACCGAGGCCTTGGCCAAGCAGAGCCTGGTCATGGATGCGGATGACGAGGCAGTCCTGAACCTCATTGCAGAGTGCGAGTGGGACCTCGGCAGGCCTCCCGGGAGCACGAGCTTCAGCCAGAAGGGGCGTGAGGCCGACTCTCGTGGTTCCCAAGAATCCAGACATCTGTTGAGCCCGCAGTTGGTACAGTACCAGTGTGGGGACTCTGGGAAGCAGGGCCGTGAGACGAGGAGGAGCAGCTGCAGAGGGTGCTGTCTGGAGAAGATGCCTTGGAGCCAGCTCTGTGGAGAGCTTCCGCCACTGTACGGAGCGGAGCCAGAGGCCTCCCGTGCCCCCAGGCCACACACGTACTTCACCCCACACCCAGACTCCATGGATACCGAGGACTCGGCCTCTTCTCAGAAGTTGGATTTGTCAGGAGAAATGGTGCCTGGTCCCCTGCCAGCCCCCGGAAAGTGCAGGAAGCGAAGAATGCCTGTTGGAAGATTCCAGACGTTTTCGGACCAGGAGGGTTTGGGCTGCCCGGAGAGAACTCATGGGTCCTCCGTGCCCAAGGAGAGCCTGAGCAGACAGGACAGCTCAGAAAGCAGGAACGGGAGGACCTTGTCTCAGCCTGAGGCCTCGGAGACTGAGGAGCAGAGGTCTCGGGGTGTGACCGACACCAGAGAGCCGTCTCCCGGGTCACACTCGGCTCTACCCGGGAAGAAGACGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCTTGGACCTGGTGGACAGGAGCTGGGGCGGCTGCAGGTCCCTGCACAGCAACGAGGCATTCCTTGCTCAGGCAAGACACATCTTGTCATCTGTTGAAGAATTCACAGCAGCTCAGGACAGCTCTGCGATGGTGGGTGAAGATGTCGGCTCCCTGGCTCTGGAGAGTAAGTCCCTGCAAAGCCGCCTTGCTGAGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGACGGCGGAGCTGCACCACACACACAAGGAGCTGGATGATTTGAGACAACATTTAGATAAATCTTTGGAAGAGAACAGTAGGTTAAAATCGCTTTTGTTGAGTATGAAAAAGGAAGTGAAGAGTGCAGACACTGCAGCCACGTTAAATTTGCAGATCGCTGGACTTCAAACAAGTGTGAAGAGGCTGTGTGGCGAGATTGTGGAACTGAAGCAGCACCTGGAGCACTACGACAAGATCCAGGAGCTCACGCAGATGCTGCAGGAGAGCCACAGCTCCCTGGTCAGCACCAATGAACACCTGCTGCAGGAGCTGAGCCAGGTGCGGGCGCAGCACAGAGCCGAGGTGGAGCAGATGCACTGGAGCTACCAGGAGCTCAAGAAGACCATGGCCCTGTTTCCACACAGCAGCGCCAGCCATGGAGGCTGCCAGGCCTGCTGA MDTRSGSQCSVTPEAIRNNEELVLPPRISRVNGWSLPLHYFRVVTWAVFVGLSLATFRIFIPLLPHSWKYIAYVVTGGIFSFHLVVHLIASCIDPADSNVRLMKNYSQPMPLFDRSKHAHVIQNQFCHLCKVTVNKKTKHCISCNKCVSGFDHHCKWINNCVGSRNYWFFFSTVASATAGMLCLIAILLYVLVQYLVNPRVLRTDPRYEDVKNMNTWLLFLPLFPVQVQTLIVVIIRMLVLLLDLLGLVQLGQLLIFHIYLKAKKMTTFEYLINTRKEESSKHQAVRKDPYVQMDKGFLQQGAGALGSSAQGVKAKSSLLIYKCPCHFCTSVNQDGDSKAQEADDAPSTSTLG*ASVIVYSWNLPREDHPPGTFSDEFNRSEIFGSLAQLLG*SGGHSVPDCIGESQSLLQLHLLVGRSVSAPRLNRARGCGLPAEPRGEG*A*LPPFCCAPAPQAPAAGRSPRESKRAEGFPTAFCIRGLTRLQRERPSFFERGQTTPPQSQVHRGLGQAEPGHGCG*RGSPEPHCRVRVGPRQASREHELQPEGA*GRLSWFPRIQTSVEPAVGTVPVWGLWEAGP*DEEEQLQRVLSGEDALEPALWRASATVRSGARGLPCPQATHVLHPTPRLHGYRGLGLFSEVGFVRRNGAWSPASPRKVQEAKNACWKIPDVFGPGGFGLPGENSWVLRAQGEPEQTGQLRKQEREDLVSA*GLGD*GAEVSGCDRHQRAVSRVTLGSTREEDGPAGGAPGDALGPGGQELGRLQVPAQQRGIPCSGKTHLVIC*RIHSSSGQLCDGG*RCRLPGSGE*VPAKPPC*AAAAARPGDERGDGGAAPHTQGAG*FETTFR*IFGREQ*VKIAFVEYEKGSEECRHCSHVKFADRWTSNKCEEAVWRDCGTEAAPGALRQDPGAHADAAGEPQLPGQHQ*TPAAGAEPGAGAAQSRGGADALELPGAQEDHGPVSTQQRQPWRLPGLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31928 LMO7::MPRIP ENSG00000136153.20::ENSG00000133030.22 NCIH1436 SRR8615946 SRR8652142 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1728 FALSE NA FALSE NA LMO7 ENSG00000136153.20 protein_coding + + chr13:75620434-75859870:+ chr13:75761038:+ chr13:76194570-76434006:+ chr13:76335174:+ MPRIP ENSG00000133030.22 protein_coding + + chr17:17042457-17217679:+ chr17:17201458:+ chr17:16945771-17120993:+ chr17:17104772:+ chr13:75775198 chr17:17199571 NA NA chr13:76349334 chr17:17102885 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH|77-154|3.8e-15^DUF4757|294-453|6e-63^Prominin|368-456|0.0014 none ["LMO7:Oncogene"];["DepMap2023"];INTERCHROMOSOMAL[chr13--chr17] 17 10 17 10 ONLY_REF_SPLICE YES_LDAS 0.3731 GT 1.9899 AG 1.9656 ENST00000341547.8 1-473 ENST00000578209.5 386-544 chr13|+|[0]75621694-75621868[0]|[1]75623271-75623320[2]|[0]75713182-75713252[1]|[2]75727029-75727098[2]|[0]75760932-75761038[1]<==>chr17|+|[0]17201458-17201616[2] atgaagaaaattaggatatgccatattttcacgttttacagttggatgtcctatgatgttctcttccagagaacagagctcggagctctggaaatttggaggcaactgatatgtgctcatgtctgcatctgtgtgggttggctgtatctcagggacagagtctgcagcaaaaaagatataattttgaggactgaacaaaattcaggaaggactattctcattaaggcagtaacagagaagaattttgaaacaaaagattttcgagcctctctagaaaatggtgttctgctgtgtgatttgattaataagcttaaacctggcgtcattaagaagatcaatagactgtctacaccaatagcaggattggataatataaacgttttcttgaaagcttgtgaacagattggattgaaagaagcccagcttttccatcctggagatctacaggatttatcaaatcgagtcactgtcaaTGTACGACACCTGTTCTACCTGGGAATGCAAACCCTGAGCTGCAAATAAGAACACAGACGTGGGAGACACCACGGCCTGAAGCTGCTCTCCTCTTCCCCGCTCTCCTCTCCTCCGGTCCCGTGATGGGTTACGCTGAGCCAGCAATGTGCACGCACTAA MKKIRICHIFTFYSWMSYDVLFQRTELGALEIWRQLICAHVCICVGWLYLRDRVCSKKDIILRTEQNSGRTILIKAVTEKNFETKDFRASLENGVLLCDLINKLKPGVIKKINRLSTPIAGLDNINVFLKACEQIGLKEAQLFHPGDLQDLSNRVTVNVRHLFYLGMQTLSCK*EHRRGRHHGLKLLSSSPLSSPPVP*WVTLSQQCART FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31937 DEDD::UFC1 ENSG00000158796.17::ENSG00000143222.12 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1731 FALSE NA FALSE NA DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130815:- chr1:161090764-161102478:- chr1:161100605:- UFC1 ENSG00000143222.12 protein_coding + + chr1:161152776-161158856:+ chr1:161156950:+ chr1:161122566-161128646:+ chr1:161126740:+ chr1:161130462,chr1:161130465 chr1:161155095,chr1:161155092 NA NA chr1:161100252,chr1:161100255 chr1:161124885,chr1:161124882 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.02Mb];LOCAL_INVERSION:-:+:[20088] 104 28 104 28 ONLY_REF_SPLICE YES_LDAS 1.3062 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31938 ZNF875::SPIDR ENSG00000181666.19::ENSG00000164808.17 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1732 FALSE NA FALSE NA ZNF875 ENSG00000181666.19 protein_coding + + chr19:37312837-37369365:+ chr19:37347872:+ chr19:37803739-37860267:+ chr19:37838774:+ SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47735307:+ chr8:48173470-48648868:+ chr8:48647869:+ chr19:37351211,chr19:37351211 chr8:47729634,chr8:47729631 NA NA chr19:37842113,chr19:37842113 chr8:48642196,chr8:48642193 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KRAB|33-72|1.1e-25^zf-C2H2_4|114-134|0.003^zf-C2H2_5|114-131|7.8e-10^zf-C2H2|116-129|0.18^zf-C2H2_jaz|116-130|0.28^zf-C2H2_11|116-134|0.0054^zf-C2H2_3rep|116-142|4^zf-met|117-129|0.88^zf-C2H2_6|120-129|0.11^KRAB|122-140|8.8^Imm-NTF2-2|150-178|0.03^FYDLN_acid|201-227|3.7^HTH_18|257-275|6.6^zf-C2H2_3rep-PARTIAL|287-313~|0.037^zf-H2C2_2|293-311|5.5e-06^Zn_ribbon_SprT|293-309|0.073^zf-UBP-PARTIAL|298-313~|0.013^zf-trcl|299-313|0.0016^FYDLN_acid-PARTIAL|299-313~|1.3^C1_4-PARTIAL|299-313~|0.71^DUF3268-PARTIAL|300-313~|0.0019^zf-C2H2-PARTIAL|301-313~|1.7e-07^zf-C2H2_4-PARTIAL|301-313~|5.8e-05^zf-C2H2_6-PARTIAL|301-313~|0.00098^Zn_ribbon_SprT-PARTIAL|301-313~|0.034^Zn-ribbon_8-PARTIAL|301-313~|0.00023^zf-C2H2_jaz-PARTIAL|301-313~|0.077^zf-met-PARTIAL|301-313~|0.067^zf_UBZ|301-308|0.17^CpXC-PARTIAL|301-313~|0.1^zf-C2H2_11|303-311|0.022^zf-UBP-PARTIAL|303-313~|0.25^C1_4-PARTIAL|303-313~|0.012 none ["ZNF875:Oncogene"] 70 23 70 23 ONLY_REF_SPLICE YES_LDAS 0.9203 GT 1.9329 AG 1.8323 ENST00000324411.8 1-313 ENST00000518074.5 2426-2631 chr19|+|[0]37344685-37344774[2]|[0]37347190-37347316[0]|[1]37347777-37347872[0]<==>chr8|+|[1]47735307-47735512[2] atgagggtcaaccacacagtgtctacaatgctccctacatgcatggttcacagacaaaccatgagttgttccggggctggaggaataacggcgttcgtggcattcagggatgtggctgtgtacttcacccaggaggagtggaggttgttgagccctgctcagaggaccctgcacagggaggtgatgctggagacttataaccatctggtctcactggaaattccatcttctaaaccaaaactcattgctcagctggagcgaggggaagcgccctggagagaggagagaaaatgtccactggacctctgtccagAGCTACGAAGTGAAGAGTGTCCTCGGAAAGGAAGTGGGGTTGTTAAATTGTTTTGTCCAGTCCGTAACCGCCCACCCGACCAGCTGCATTGGATTGGAGGAAATCGAGCTTCTGAGTGCAGGAGGGGCCTCTGCAGAACACTAGCGGTTGCCGCAGGATCTGTGAACTTTGCAATGTGGCTGCAAGGGTGGTGGTGGTGGTGGTGA MRVNHTVSTMLPTCMVHRQTMSCSGAGGITAFVAFRDVAVYFTQEEWRLLSPAQRTLHREVMLETYNHLVSLEIPSSKPKLIAQLERGEAPWREERKCPLDLCPELRSEECPRKGSGVVKLFCPVRNRPPDQLHWIGGNRASECRRGLCRTLAVAAGSVNFAMWLQGWWWWW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31939 EPN1::CYYR1-AS1 ENSG00000063245.15::ENSG00000197934.8 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ CYYR1-AS1 ENSG00000197934.8 lncRNA + + chr21:26393635-26569252:+ chr21:26503582:+ chr21:27765954-27941571:+ chr21:27875901:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr21] 46 13 46 13 ONLY_REF_SPLICE YES_LDAS 0.5838 GT 1.9899 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31940 PBX1::BCAN-AS2 ENSG00000185630.20::ENSG00000229953.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164563311:+ chr1:164524821-164868533:+ chr1:164532548:+ BCAN-AS2 ENSG00000229953.1 lncRNA - - chr1:156646507-156661424:- chr1:156647154:- chr1:156616299-156631216:- chr1:156616946:- chr1:164690110,chr1:164690106 chr1:156650054,chr1:156650058 NA NA chr1:164659347,chr1:164659343 chr1:156619846,chr1:156619850 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PBX1:Oncogene"] 46 22 46 22 ONLY_REF_SPLICE YES_LDAS 0.6729 GT 1.4256 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 31941 EPN1::ENSG00000232692 ENSG00000063245.15::ENSG00000232692.1 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EPN1 ENSG00000063245.15 protein_coding + + chr19:55675226-55709858:+ chr19:55678855:+ chr19:56186592-56221224:+ chr19:56190221:+ ENSG00000232692 ENSG00000232692.1 lncRNA + + chr21:26378552-26471698:+ chr21:26470751:+ chr21:27750871-27844017:+ chr21:27843070:+ chr19:55680087,chr19:55680087,chr19:55680085,chr19:55680082 chr21:26404496,chr21:26404493,chr21:26404493,chr21:26404493 NA NA chr19:56191453,chr19:56191453,chr19:56191451,chr19:56191448 chr21:27776815,chr21:27776812,chr21:27776812,chr21:27776812 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 38 27 38 27 ONLY_REF_SPLICE YES_LDAS 0.6432 GT 1.9899 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31945 DCAF5::ACTN1 ENSG00000139990.18::ENSG00000072110.16 COV362 SRR8615949 SRR8639222 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1735 FALSE NA FALSE NA DCAF5 ENSG00000139990.18 protein_coding - - chr14:69050881-69153150:- chr14:69116366:- chr14:69517598-69619867:- chr14:69583083:- ACTN1 ENSG00000072110.16 protein_coding - - chr14:68874128-68979440:- chr14:68925672:- chr14:69340845-69446157:- chr14:69392389:- chr14:69093947,chr14:69093954 chr14:68962065,chr14:68962069 NA NA chr14:69560664,chr14:69560671 chr14:69428782,chr14:69428786 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|49-81|4.2e-08^NBCH_WD40|54-84|0.014^WD40|100-129|5.2e-06^WD40|138-171|1.6e-08^NBCH_WD40|138-174|0.0014^WD40|237-249|0.55^WD40|284-307|0.00051^WD40|328-361|3.7e-08^DUF2634-PARTIAL|639-665~|3.8e-06 CH-PARTIAL|~106-135|2.5e-25^Dak2-PARTIAL|~106-151|0.17^CH|145-250|5.5e-32^CAMSAP_CH|166-227|0.0039^Dak2|223-264|0.0035^Uds1|252-288|1.1^DHR-2_Lobe_C|271-316|0.064^Spectrin|275-383|1.3e-15^CH|284-294|9.9^DHR-2_Lobe_C|333-345|4.7^Spectrin|394-498|9e-29^Uds1|413-503|0.00011^Dak2|486-507|2.4^Spectrin|510-620|8.8e-18^EF-hand_11|580-627|2.3^DHR-2_Lobe_C|622-673|0.003^Spectrin|632-732|1.1e-13^Uds1|662-699|0.72^XisI|670-720|7.8e-05^EF-hand_11|734-819|0.00019^AIF-1|745-812|0.00027^EF-hand_1|750-777|1.5e-05^EF-hand_6|750-779|2.5e-07^EF-hand_7|751-812|8.8e-10^EF-hand_8|763-813|6.3e-09^EF-hand_1|786-813|0.00016^EF-hand_6|787-812|0.68^Dak2|800-844|6.8^EFhand_Ca_insen|817-835|8.2e-06^EFhand_Ca_insen|870-926|3e-21^EF-hand_8|879-888|0.91^EF-hand_6|879-888|1 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.07Mb];NEIGHBORS[71441] 14 10 14 10 ONLY_REF_SPLICE YES_LDAS 0.2375 GT 1.8892 AG 1.9899 ENST00000341516.10 1-665 ENST00000538545.6 106-2793 chr14|-|[1]69116366-69116495[1]|[0]69118139-69118278[2]|[1]69119194-69119230[1]|[0]69122217-69122360[1]|[0]69152765-69152978[0]<==>chr14|-|[2]68874859-68875146[0]|[2]68877082-68877240[0]|[2]68878458-68878523[0]|[2]68879962-68880108[0]|[2]68880810-68880989[0]|[2]68882458-68882592[0]|[2]68882873-68883055[0]|[2]68884168-68884308[0]|[2]68884775-68884883[2]|[1]68885425-68885575[1]|[0]68890139-68890286[0]|[2]68892053-68892283[0]|[2]68893655-68893747[0]|[2]68902477-68902562[1]|[0]68904655-68904736[0]|[2]68909318-68909396[2]|[1]68909955-68910042[1]|[0]68912156-68912242[1]|[0]68921006-68921125[1]|[0]68925558-68925672[0] atgaagaggagagctggcctggggggcagcatgaggtcagtggtgggcttcttgtcccagcggggcttgcatggggaccccctgctcactcaggactttcagaggagacgcctgcggggctgcagaaacctctacaagaaggacctcctcggccacttcggctgtgtcaatgccattgaattctccaacaatggaggccagtggctggtctcaggaggagatgaccgccgggttctgctatggcacatggaacaagccatccactccagggtcaagcccatacagctgaaaggagagcaccattccaacattttttgcctggctttcaacagtgggaacactaaagtgttctctggaggcaatgatgagcaagttatcctccatgatgttgaaagcagtgagacattggacgtgtttgctcatgaagatgcagtatatggcttgtctgtgagcccagtgaatgacaacatttttgccagttcctcagatgatggccgggttctcatttgggacattcgggaatccccccatggagagcccttctgcctggcaaactatccatcagcctttcatagtgtcatgtttaaccctgtggagcccaggttgttggccacagccaattcaaaggaaggagtgggactctgggacattcgaaaacctcagagACATTCACGGCATGGTGTAACTCCCACCTCCGGAAGGCGGGGACACAGATCGAGAACATCGAAGAGGACTTCCGGGATGGCCTGAAGCTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGCTTGGCCAAGCCAGAGCGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGCCAGCAAAGGCGTCAAACTGGTGTCCATCGGAGCCGAAGAAATCGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAGAGACTTCAGCCAAGGAAGGGCTGCTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAGCTGGAAGGATGGCCTCGGCTTCTGTGCTTTGATCCACCGACACCGGCCCGAGCTGATTGACTACGGGAAGCTGCGGAAGGATGATCCACTCACAAATCTGAATACGGCTTTTGACGTGGCAGAGAAGTACCTGGACATCCCCAAGATGCTGGATGCCGAAGACATCGTTGGAACTGCCCGACCGGATGAGAAAGCCATCATGACTTACGTGTCTAGCTTCTACCACGCCTTCTCTGGAGCCCAGAAGGCGGAGACAGCAGCCAATCGCATCTGCAAGGTGTTGGCCGTCAACCAGGAGAACGAGCAGCTTATGGAAGACTACGAGAAGCTGGCCAGTGATCTGTTGGAGTGGATCCGCCGCACAATCCCGTGGCTGGAGAACCGGGTGCCCGAGAACACCATGCATGCCATGCAACAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTGCACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGGCTCAGCAACCGGCCTGCCTTCATGCCCTCTGAGGGCAGGATGGTCTCGGACATCAACAATGCCTGGGGCTGCCTGGAGCAGGTGGAGAAGGGCTATGAGGAGTGGTTGCTGAATGAGATCCGGAGGCTGGAGCGACTGGACCACCTGGCAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACTGACGGCAAAGAGGCCATGCTGCGACAGAAGGACTATGAGACCGCCACCCTCTCGGAGATCAAGGCCCTGCTCAAGAAGCATGAGGCCTTCGAGAGTGACCTGGCTGCCCACCAGGACCGTGTGGAGCAGATTGCCGCCATCGCACAGGAGCTCAATGAGCTGGACTATTATGACTCACCCAGTGTCAACGCCCGTTGCCAAAAGATCTGTGACCAGTGGGACAATCTGGGGGCCCTAACTCAGAAGCGAAGGGAAGCTCTGGAGCGGACCGAGAAACTGCTGGAGACCATTGACCAGCTGTACTTGGAGTATGCCAAGCGGGCTGCACCCTTCAACAACTGGATGGAGGGGGCCATGGAGGACCTGCAGGACACCTTCATTGTGCACACCATTGAGGAGATCCAGGGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCTGATGCCGACAAGGAGCGCCTGGCCATCCTGGGCATCCACAATGAGGTGTCCAAGATTGTCCAGACCTACCACGTCAATATGGCGGGCACCAACCCCTACACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCACGTGCGGCAGCTGGTGCCTCGGAGGGACCAAGCTCTGACGGAGGAGCATGCCCGACAGCAGCACAATGAGAGGCTACGCAAGCAGTTTGGAGCCCAGGCCAATGTCATCGGGCCCTGGATCCAGACCAAGATGGAGGAGATCGGGAGGATCTCCATTGAGATGCATGGGACCCTGGAGGACCAGCTCAGCCACCTGCGGCAGTATGAGAAGAGCATCGTCAACTACAAGCCAAAGATTGATCAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCGCTCATCTTCGACAACAAGCACACCAACTACACCATGGAGCACATCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCAGGACCATCAATGAGGTAGAGAACCAGATCCTGACCCGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAATGAGTTCCGGGCCTCCTTCAACCACTTTGACCGGAAGAAGACAGGCATGATGGACACGGATGATTTCCGCGCCTGCCTGATCTCCATGGGTTACAACATGGGAGAAGCAGAATTTGCCCGCATCATGAGCATTGTGGACCCCAACCGCCTGGGGGTAGTGACATTCCAGGCCTTCATTGACTTCATGTCCCGCGAGACAGCCGACACAGATACAGCAGACCAAGTCATGGCTTCCTTCAAGATCCTGGCTGGGGACAAGTTACAGGAGGGAGGCAAAATGCAAACGGCACATGCTGCCTTCACGCCGCCAGGCTTTGCGGCTGTGTCGGGCCGCGCCGCTTTACGGCTGCTGGACTTTGCGGCCTTCCTGACCACTCTCTCCTCGCAGAACTACATTACCATGGACGAGCTGCGCCGCGAGCTGCCACCCGACCAGGCTGAGTACTGCATCGCGCGGATGGCCCCCTACACCGGCCCCGACTCCGTGCCAGGTGCTCTGGACTACATGTCCTTCTCCACGGCGCTGTACGGCGAGAGTGACCTCTAA MKRRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQRHSRHGVTPTSGRRGHRSRTSKRTSGMA*SSCCCWRSSQVNAWPSQSEAR*ECTRSPTSTRPWIS*PAKASNWCPSEPKKSWMGM*R*PWA*SGPSSCALPSRTSPWKRLQPRKGCSCGVRERQPLTKMSTSRTST*AGRMASASVL*STDTGPS*LTTGSCGRMIHSQI*IRLLTWQRSTWTSPRCWMPKTSLELPDRMRKPS*LTCLASTTPSLEPRRRRQQPIASARCWPSTRRTSSLWKTTRSWPVICWSGSAAQSRGWRTGCPRTPCMPCNRSWRTSGTTGACTSRPRCRRSASWRSTSTRCRPSCGSATGLPSCPLRAGWSRTSTMPGAAWSRWRRAMRSGC*MRSGGWSDWTTWQRSSGRRPPSTRPGLTAKRPCCDRRTMRPPPSRRSRPCSRSMRPSRVTWLPTRTVWSRLPPSHRSSMSWTIMTHPVSTPVAKRSVTSGTIWGP*LRSEGKLWSGPRNCWRPLTSCTWSMPSGLHPSTTGWRGPWRTCRTPSLCTPLRRSRD*PQPMSSSRPPSLMPTRSAWPSWASTMRCPRLSRPTTSIWRAPTPTQPSRLRRSMANGTTCGSWCLGGTKL*RRSMPDSSTMRGYASSLEPRPMSSGPGSRPRWRRSGGSPLRCMGPWRTSSATCGSMRRASSTTSQRLISWRATTSSSRRRSSSTTSTPTTPWSTSVWAGSSCSPPSPGPSMR*RTRS*PGMPRASARSR*MSSGPPSTTLTGRRQA*WTRMISAPA*SPWVTTWEKQNLPAS*ALWTPTAWG**HSRPSLTSCPARQPTQIQQTKSWLPSRSWLGTSYRREAKCKRHMLPSRRQALRLCRAAPLYGCWTLRPS*PLSPRRTTLPWTSCAASCHPTRLSTASRGWPPTPAPTPCQVLWTTCPSPRRCTARVTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31950 ARID1A::MAU2 ENSG00000117713.21::ENSG00000129933.21 DB SRR8615952 SRR8639211 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) metastasis star-fusion TRUE TRUE TRUE 1736 FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ MAU2 ENSG00000129933.21 protein_coding + + chr19:19320829-19358754:+ chr19:19335718:+ chr19:19431638-19469563:+ chr19:19446527:+ chr1:26699679,chr1:26699677 chr19:19324592,chr19:19324587 NA NA chr1:27026170,chr1:27026168 chr19:19435401,chr19:19435396 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ARID|1020-1104|6.6e-22 Cohesin_load-PARTIAL|~277-554|7.4e-114^TPR_MalT|287-322|0.23^HemY_N|298-322|0.64^TPR_2|301-318|0.012^TPR_8|302-317|0.34^TPR_19|302-318|8.4^TPR_1|307-317|1.6^TPR_MalT|345-417|0.062^TPR_11|356-376|0.16^HemY_N|375-412|2.7^TPR_12|378-408|0.26^TPR_8|379-409|0.21^TPR_1|379-408|0.13^TPR_12|380-434|0.11^TPR_2|380-409|0.092^TPR_19|398-430|5.2^TPR_8|420-434|0.42^TPR_10|420-433|1.7^TPR_2|421-431|4.5^TPR_12|459-519|3.6e-07^TPR_2|459-488|0.00014^TPR_1|459-487|0.00097^TPR_8|460-489|0.00077^HemY_N|464-499|5.5e-05^TPR_MalT|468-570|1.2e-06^TPR_10|470-489|0.00019^TPR_19|472-491|0.038^TPR_11|472-478|2^TPR_1|501-517|0.11^TPR_2|502-517|0.63^TPR_8|502-517|2.4^TPR_10|505-527|5.5 ["ARID1A:FoundationOne_panel","ARID1A:Oncogene","ARID1A:ArcherDX_panel"];["DepMap2023"];INTERCHROMOSOMAL[chr1--chr19] 45 7 45 7 ONLY_REF_SPLICE YES_LDAS 0.5978 GT 1.6402 AG 1.9329 ENST00000324856.13 1-1137 ENST00000262815.13 277-1842 chr1|+|[0]26696404-26697540[2]<==>chr19|+|[0]19335718-19335735[2]|[0]19336122-19336187[2]|[0]19337170-19337265[2]|[0]19338845-19338939[1]|[2]19340846-19340873[2]|[0]19341252-19341407[2]|[0]19342535-19342681[2]|[0]19342776-19342866[0]|[1]19343837-19343940[2]|[0]19344849-19344926[2]|[0]19345304-19345369[2]|[0]19347280-19347366[2]|[0]19348889-19348938[1]|[2]19349155-19349232[1]|[2]19349325-19349436[2]|[0]19354355-19354445[0]|[1]19355264-19355391[2]|[0]19355708-19355782[2] atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccgccctcggagctgaagaaagccgagcagcagcagcgggaggaggcggggggcgaggcggcggcggcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgccgtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggtggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggcggcggcggtggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcgctgcagagcggcggcggcgggggcctggagccctacgcggggccccagcagaactctcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctaccccccgcccgccccggcctacgcgctgagctccccgagaggtggcactccgggctccggcgcggcggcggctgccggctccaagccgcctccctcctccagcgcctccgcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctccgcggccggcgggggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacagtggcgggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgttggggggctgcggcggcggcagctgcggcggcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcccggacccctcagTGGTTGATATCACAGCAAATCCCGCAGTTCGAAGATGTTAAATTTGAAGCAGCAAGTCTGTTGTCTGAATTGTACTGTCAAGAGAATTCCGTTGATGCAGCAAAGCCGCTGCTGCGGAAGGCGATCCAGATCTCACAGCAGACCCCATATTGGCACTGCCGCCTGCTCTTCCAGCTCGCTCAACTGCACACGCTTGAGAAGGACCTGGTGTCGGCCTGTGACCTCCTGGGTGTAGGGGCCGAGTACGCCCGGGTGGTGGGATCTGAATACACACGGGCGCTGTTCCTCCTCAGCAAGGGGATGCTGCTGCTGATGGAGCGAAAGCTGCAGGAGGTGCACCCGCTGCTGACCCTCTGCGGGCAGATCGTGGAGAACTGGCAGGGGAACCCCATCCAGAAGGAGTCGCTGCGTGTCTTCTTCCTGGTGCTCCAGGTCACCCACTATCTGGATGCCGGGCAGGTGAAGAGCGTGAAGCCGTGTCTGAAGCAGCTGCAGCAGTGCATCCAGACCATCTCCACACTGCACGATGATGAGATCCTGCCCAGCAACCCCGCTGACCTCTTCCACTGGCTGCCCAAGGAGCACATGTGTGTGCTTGTCTACCTGGTGACTGTGATGCACTCCATGCAGGCCGGCTACCTGGAGAAGGCGCAGAAGTACACGGACAAGGCCCTCATGCAGCTGGAGAAGCTCAAGATGCTGGACTGCAGCCCCATCCTGTCATCCTTCCAAGTGATCCTGCTGGAGCACATCATCATGTGCCGCCTTGTCACGGGTCACAAGGCCACGGCGCTGCAGGAGATCTCCCAGGTCTGCCAGCTGTGCCAGCAGTCCCCCCGGCTCTTCTCCAACCATGCAGCACAGCTGCACACATTGCTGGGCCTGTACTGTGTCTCTGTCAACTGCATGGACAACGCGGAAGCCCAGTTCACCACGGCCCTGCGGCTCACCAACCACCAGGAGCTGTGGGCCTTCATCGTCACCAACCTGGCGAGTGTGTATATACGGGAAGGAAATAGACACCAAGAGGTACTCTACAGTCTGCTGGAGAGGATCAACCCGGACCACAGCTTCCCTGTCAGCTCGCACTGCCTCCGAGCAGCCGCCTTCTATGTGCGTGGGCTCTTCTCCTTCTTCCAGGGACGCTACAACGAGGCCAAGCGATTTCTGCGGGAAACTCTGAAGATGTCCAATGCTGAGGACCTGAACCGGCTCACAGCCTGCTCCCTCGTGCTTCTGGGCCACATCTTCTATGTGCTGGGAAACCACAGGGAGAGTAACAACATGGTGGTGCCTGCCATGCAGCTCGCCAGCAAGATCCCGGACATGTCGGTACAGCTGTGGTCGTCAGCACTGCTGAGAGACCTGAATAAAGCCTGTGGGAACGCCATGGATGCCCATGAAGCCGCCCAGATGCACCAGAACTTCTCGCAGCAGCTGCTCCAGGACCACATTGAGGCCTGCAGCCTCCCCGAACACAACCTCATCACGTGGACAGACGGTCCACCCCCCGTGCAGTTCCAAGCTCAGAATGGACCCAACACCAGCCTGGCCAGCCTCCTGTGA MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQWLISQQIPQFEDVKFEAASLLSELYCQENSVDAAKPLLRKAIQISQQTPYWHCRLLFQLAQLHTLEKDLVSACDLLGVGAEYARVVGSEYTRALFLLSKGMLLLMERKLQEVHPLLTLCGQIVENWQGNPIQKESLRVFFLVLQVTHYLDAGQVKSVKPCLKQLQQCIQTISTLHDDEILPSNPADLFHWLPKEHMCVLVYLVTVMHSMQAGYLEKAQKYTDKALMQLEKLKMLDCSPILSSFQVILLEHIIMCRLVTGHKATALQEISQVCQLCQQSPRLFSNHAAQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQELWAFIVTNLASVYIREGNRHQEVLYSLLERINPDHSFPVSSHCLRAAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAEDLNRLTACSLVLLGHIFYVLGNHRESNNMVVPAMQLASKIPDMSVQLWSSALLRDLNKACGNAMDAHEAAQMHQNFSQQLLQDHIEACSLPEHNLITWTDGPPPVQFQAQNGPNTSLASLL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 31957 CNOT2::PTPRR ENSG00000111596.14::ENSG00000153233.13 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1738 TRUE 3200 TRUE 1206 CNOT2 ENSG00000111596.14 protein_coding + + chr12:70243002-70354993:+ chr12:70319364:+ chr12:70636782-70748773:+ chr12:70713144:+ PTPRR ENSG00000153233.13 protein_coding - - chr12:70638073-70920738:- chr12:70764778:- chr12:71031853-71314518:- chr12:71158558:- chr12:70321362 chr12:70778948 NA NA chr12:70715142 chr12:71172728 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none DUF3149|120-137|0.0014^Y_phosphatase3|250-266|3.6^Y_phosphatase|305-532|3.3e-81^DUF1999|340-385|0.00011^PTPlike_phytase|409-487|8.3e-06^Y_phosphatase3|435-493|4.5e-07^DSPc|465-492|6.3e-08 ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.28Mb] 36 30 36 26.16 ONLY_REF_SPLICE YES_LDAS 1.1408 GT 1.8295 AG 1.9219 ENST00000550194.5 1-238 ENST00000342084.8 22-1638 chr12|+|[0]70278227-70278274[2]|[0]70310895-70311017[2]|[0]70319298-70319364[0]<==>chr12|-|[2]70639184-70639277[2]|[1]70656704-70656817[2]|[1]70660940-70661097[0]|[2]70662495-70662605[0]|[2]70684127-70684264[0]|[2]70684704-70684783[1]|[0]70698265-70698349[0]|[2]70701137-70701323[2]|[1]70745818-70746086[0]|[2]70754191-70754301[0]|[2]70761471-70761626[0]|[2]70764665-70764778[0] atggtgaggactgatggacatacattatctgagaaaagaaactaccaggtgacaaacagcatgtttggtgcttcaagaaagaagtttgtagagggggtcgacagtgactaccatgacgaaaacatgtactacagccagtcttctatgtttccacatcggtcagaaaaagatatgctggcatcaccatctacatcaggtcagctgtctcagtttggggcaagtttatacgggcaacaaaACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGA MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQNTANGCKQAEHNLASDLPPRSGCSFRTLTPASAHQSPHWKEEQY*TVCVSHKPKNRNF*CSAL*GSSSFT*YQCFASKFIPVWNYRSLS*EKCFTRAA*SGQNLEQRRILCCCHFSQHLCYYSNVFDDSLQIKRKISAFLKTRQREKPGDPPIAHHITASTVRGKDSPQHGPT*AGPKGTECCRGPSRPRCS*DQSYHRYLCLPFSFQNEAHRTSREKRVQRISYIGHE*LGEH*TLCVYTNTTGEGSNGVSAVSQPNSHKVSAEGRRGKFTFTPK*IHGNTNELCGSQRN*YSASWN*KSL*DHFTKSPQQSVFKTKKCNRFIEHLH*C*LY*GLQWQGESLHCHAGPHDQHRG*FLADGLAGRQPCDCYDHKTQRKK*EMCAILAGKERDIWKS*GSGYQCK*M**LHHSKPCLKARKPHPTCEALLVHLMA*SQDSRQCPAPPTAHAGCRRRQTCFPGPRACGCPLQCRNR*NRVFYCYIHWLSTAERRRSCGCTKHCLPASYG*RWNGANQ*AV*ICAPCSVPV*EQTFSRDCPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31958 CNOT2::PTPRR ENSG00000111596.14::ENSG00000153233.13 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1739 TRUE 3200 TRUE 1206 CNOT2 ENSG00000111596.14 protein_coding + + chr12:70243002-70354993:+ chr12:70311017:+ chr12:70636782-70748773:+ chr12:70704797:+ PTPRR ENSG00000153233.13 protein_coding - - chr12:70638073-70920738:- chr12:70764778:- chr12:71031853-71314518:- chr12:71158558:- chr12:70321362 chr12:70778948 NA NA chr12:70715142 chr12:71172728 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none DUF3149|120-137|0.0014^Y_phosphatase3|250-266|3.6^Y_phosphatase|305-532|3.3e-81^DUF1999|340-385|0.00011^PTPlike_phytase|409-487|8.3e-06^Y_phosphatase3|435-493|4.5e-07^DSPc|465-492|6.3e-08 ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.28Mb] 13 18 13 3.84 ONLY_REF_SPLICE YES_LDAS 0.3091 GT 1.7968 AG 1.9219 ENST00000550194.5 1-171 ENST00000342084.8 22-1638 chr12|+|[0]70278227-70278274[2]|[0]70310895-70311017[2]<==>chr12|-|[2]70639184-70639277[2]|[1]70656704-70656817[2]|[1]70660940-70661097[0]|[2]70662495-70662605[0]|[2]70684127-70684264[0]|[2]70684704-70684783[1]|[0]70698265-70698349[0]|[2]70701137-70701323[2]|[1]70745818-70746086[0]|[2]70754191-70754301[0]|[2]70761471-70761626[0]|[2]70764665-70764778[0] atggtgaggactgatggacatacattatctgagaaaagaaactaccaggtgacaaacagcatgtttggtgcttcaagaaagaagtttgtagagggggtcgacagtgactaccatgacgaaaacatgtactacagccagtcttctatgtttccacatcggtcagaaaaagatACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCTTCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTGGAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCTGAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTCTCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGA MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDTLQMDVNKLNITLLRIFRQGVAAALGLLPQQVHINRLIGKKNSIELFVSPINRKTGISDALPSEEVLRSLNINVLHQSLSQFGITEVSPEKNVLQGQHEADKIWSKEGFYAVVIFLSIFVIIVTCLMILYRLKERFQLSLRQDKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVLNVVVDPQGRGAPEIKATTATSVCPSPFKMKPIGLQERRGSNVSLTLDMSSLGNIEPFVSIPTPREKVAMEYLQSASRILTRSQLRDVVASSHLLQSEFMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKAFIATQGPMINTVDDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHALCLYESRLSAETVQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31961 GATAD2B::NUP210L ENSG00000143614.11::ENSG00000143552.10 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1741 TRUE 3201 FALSE NA GATAD2B ENSG00000143614.11 protein_coding - - chr1:153789030-153923360:- chr1:153922733:- chr1:153761506-153895836:- chr1:153895209:- NUP210L ENSG00000143552.10 protein_coding - - chr1:153992690-154155116:- chr1:154104210:- chr1:153965166-154127592:- chr1:154076686:- chr1:153893404 chr1:154110200 NA NA chr1:153865880 chr1:154082676 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.07Mb];LOCAL_REARRANGEMENT:-:[69710] 7 1 7 0.28 ONLY_REF_SPLICE YES_LDAS 0.1336 GT 1.371 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary exact TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Breast invasive carcinoma,Uterine Carcinosarcoma OVARY,LUNG,BREAST,UTERUS exact 153895209|153895209,153895209|153895209|153895209,153895209,153895209 TRUE|TRUE,TRUE|TRUE|TRUE,TRUE,TRUE 153965565|153965411,153982597|153984846|153967656,153967656,154076686 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,TRUE PARTIALLY,PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Esophagus OESOPHAGUS no_match 153922733 TRUE 154061674 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31963 XPNPEP1::PLXDC2 ENSG00000108039.18::ENSG00000120594.17 COV644 SRR8615955 SRR8639214 OVARY carcinoma primary star-fusion TRUE TRUE TRUE 1742 FALSE NA FALSE NA XPNPEP1 ENSG00000108039.18 protein_coding - - chr10:109864766-109923553:- chr10:109875528:- chr10:111624524-111683311:- chr10:111635286:- PLXDC2 ENSG00000120594.17 protein_coding + + chr10:19816239-20289856:+ chr10:20164468:+ chr10:20105168-20578785:+ chr10:20453397:+ chr10:109875127,chr10:109875129 chr10:20163780,chr10:20163778 NA NA chr10:111634885,chr10:111634887 chr10:20452709,chr10:20452707 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Creatinase_N|55-191|9.2e-13^Creatinase_N_2|200-369|3.7e-51^Creatinase_N|226-256|0.095^Peptidase_M24|371-585|1.6e-58^Peptidase_M24_C|600-662|6.5e-27 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:89.57Mb] 5 5 5 5 ONLY_REF_SPLICE YES_LDAS 0.1836 GT 1.9656 AG 1.7465 ENST00000502935.6 1-1391 ENST00000377242.7 637-1443 chr10|-|[1]109875528-109875599[2]|[1]109877790-109877867[2]|[1]109878000-109878058[0]|[2]109880188-109880238[0]|[2]109880842-109880931[0]|[2]109882432-109882642[2]|[1]109884067-109884148[1]|[0]109886246-109886341[1]|[0]109888049-109888192[1]|[0]109888503-109888595[1]|[0]109891722-109891826[1]|[0]109893012-109893075[0]|[2]109907691-109907815[1]|[0]109915011-109915099[2]|[1]109923402-109923433[0]<==>chr10|+|[0]20164468-20164567[0]|[1]20176999-20177094[0]|[1]20177328-20177409[1]|[2]20211669-20211729[2]|[0]20217426-20217576[0]|[1]20219064-20219102[0]|[1]20245345-20245505[2]|[0]20279703-20279819[2] atggcagcctccagaaagccaccgcgagtaagggtgaatcaccaggattttcaactgagaaatttaagaataattgaacctaacgaggtgacacactcaggagacacaggtgtggaaacagacggcagaatgcctccaaaggtgacttcagagctgcttcggcagctgagacaagccatgaggaactctgagtatgtgaccgaaccgatccaggcctacatcatcccatcgggagatgctcatcagagtgagtatattgctccatgtgactgtcggcgggcttttgtctctggattcgatggctctgcgggcacagccatcatcacagaagagcatgcagccatgtggactgacgggcgctactttctccaggctgccaagcaaatggacagcaactggacacttatgaagatgggtctgaaggacacaccaactcaggaagactggctggtgagtgtgcttcctgaaggatccagggttggtgtggaccccttgatcattcctacagattattggaagaaaatggccaaagttctgagaagtgccggccatcacctcattcctgtcaaggagaacctcgttgacaaaatctggacagaccgtcctgagcgcccttgcaagcctctcctcacactgggcctggattacacaggcatctcctggaaggacaaggttgcagaccttcggttgaaaatggctgagaggaacgtcatgtggtttgtggtcactgccttggatgagattgcgtggctatttaatctccgaggatcagatgtggagcacaatccagtatttttctcctacgcaatcataggactagagacgatcatgctcttcattgatggtgaccgcatagacgcccccagtgtgaaggagcacctgcttcttgacttgggtctggaagccgaatacaggatccaggtgcatccctacaagtccatcctgagcgagctcaaggccctgtgtgctgacctctccccaagggagaaggtgtgggtcagtgacaaggccagctatgctgtgagcgagaccatccccaaggaccaccgctgctgtatgccttacacccccatctgcatcgccaaagctgtgaagaattcagctgagtcagaaggcatgaggcgggctcacattaaagatgctgttgctctctgtgaactctttaactggctggagaaagaggttcccaaaggtggtgtgacagagatctcagctgctgacaaagctgaggagtttcgcaggcaacaggcagactttgtggacctgagcttcccaacaatttccagtacgggacccaacggcgccatcattcactacgcgccagtccctgagacgaataggaccttgtccctggatgaggtgtaccttattgactcgggtgctcaatacaaATTCCTGTCTTGGTCACACAGATAAGTTCAACCAATCATCCAGTGAAAGTCGGACTGTCCGATGCATTTGTCGTTGTCCACAGGATCCAACAAATTCCCAATGTTCGAAGAAGAACAATTTATGAATACCACCGAGTAGAGCTACAAATGTCAAAAATTACCAACATTTCGGCTGTGGAGATGACCCCATTACCCACATGCCTCCAGTTTAACAGATGTGGCCCCTGTGTATCTTCTCAGATTGGCTTCAACTGCAGTTGGTGTAGTAAACTTCAAAGATGTTCCAGTGGATTTGATCGTCATCGGCAGGACTGGGTGGACAGTGGATGCCCTGAAGAGTCAAAAGAGAAGATGTGTGAGAATACAGAACCAGTGGAAACTTCTTCTCGAACCACCACAACCGTAGGAGCGACAACCACCCAGTTCAGGGTCCTAACTACCACCAGAAGAGCAGTGACTTCTCAGTTTCCCACCAGCCTCCCTACAGAAGATGATACCAAGATAGCACTACATCTAAAAGATAATGGAGCTTCTACAGATGACAGTGCAGCTGAGAAGAAAGGGGGAACCCTCCACGCTGGCCTCATCATTGGAATCCTCATCCTGGTCCTCATTGTAGCCACAGCCATTCTTGTGACAGTCTATATGTATCACCACCCAACATCAGCAGCCAGCATCTTCTTTATTGAGAGACGCCCAAGCAGATGGCCTGCGATGAAGTTTAGAAGAGGCTCTGGACATCCTGCCTATGCTGAAGTTGAACCAGTTGGAGAGAAAGAAGGCTTTATTGTATCAGAGCAGTGCTAA MAASRKPPRVRVNHQDFQLRNLRIIEPNEVTHSGDTGVETDGRMPPKVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGGVTEISAADKAEEFRRQQADFVDLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKFLSWSHR*VQPIIQ*KSDCPMHLSLSTGSNKFPMFEEEQFMNTTE*SYKCQKLPTFRLWR*PHYPHASSLTDVAPVYLLRLASTAVGVVNFKDVPVDLIVIGRTGWTVDALKSQKRRCVRIQNQWKLLLEPPQP*ERQPPSSGS*LPPEEQ*LLSFPPASLQKMIPR*HYI*KIMELLQMTVQLRRKGEPSTLASSLESSSWSSL*PQPFL*QSICITTQHQQPASSLLRDAQADGLR*SLEEALDILPMLKLNQLERKKALLYQSSA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31964 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1743 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36581739:+ chr9:36572859-36677680:+ chr9:36581736:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|11-58~|2.6e-18^PK_Tyr_Ser-Thr-PARTIAL|12-58~|1e-11 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.44Mb] 98 226 98 158.45 ONLY_REF_SPLICE YES_LDAS 2.5429 GT 1.8892 AG 1.5058 ENST00000545008.5 1-58 ENST00000534928.5 611-1632 chr9|+|[0]36581682-36581739[0]<==>chr9|+|[1]37302188-37302231[2]|[0]37304188-37304313[2]|[0]37305544-37305714[2]|[0]37327799-37327834[2]|[0]37349357-37349452[2]|[0]37354710-37354824[0]|[1]37356835-37357268[2] atgaaagattatgatgaacttctcaaatattatgaattacatgaaactattgggacagGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGAAAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGATGCTTGCACAGAAATCTGGAGGCAGTATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCAAGACCATCAGCCTTAGCATATTGCTATCACTGCGCGCAAAAAGGCCATTATGGACACGAATGTCCAGAAAGAGAAGTGTATGACCCGTCTCCAGTATCTCCATTCATCTGCTACTATGATGACAAATATGAAATTCAGGAGAGAGAAAAGAGACTAAAACAAAAAATAAAAGTACTCAAGAAAAATGGGGTTATCCCAGAGCCATCCAAGCTACCTTATATAAAAGCAGCAAATGAGAACCCCCACCATGATATAAGGAAGGGCCGTGCCTCATGGAAAAGCAACAGGTGGCCTCAAGAAAATAAAGAAACACAAAAAGAAATGAAGAACAAGAATAGAAACTGGGAGAAGCACAGGAAGGCTGACAGACATCGTGAAGTGGATGAGGATTTTCCCAGGGGCCCCAAAACCTACTCTTCTCCTGGCAGTTTTAAAACCCAGAAGCCTTCTAAGCCCTTTCACCGTTCATCACATTACCACACGTCAAGAGAAGACAAGTCTCCCAAGGAAGGCAAGAGGGGCAAGCAGAAGAAAAAGGAGAGGTGCTGGGAAGATGATGACAATGATAACTTATTTCTTATTAAGCAGAGAAAAAAAAAGTCTTAA MKDYDELLKYYELHETIGTGEDGINWSISDKDIEAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREVYDPSPVSPFICYYDDKYEIQEREKRLKQKIKVLKKNGVIPEPSKLPYIKAANENPHHDIRKGRASWKSNRWPQENKETQKEMKNKNRNWEKHRKADRHREVDEDFPRGPKTYSSPGSFKTQKPSKPFHRSSHYHTSREDKSPKEGKRGKQKKKERCWEDDDNDNLFLIKQRKKKS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31967 ITGAV::ZC3H15 ENSG00000138448.13::ENSG00000065548.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1749 FALSE NA FALSE NA ITGAV ENSG00000138448.13 protein_coding + + chr2:186590010-186680901:+ chr2:186590523:+ chr2:187454737-187545628:+ chr2:187455250:+ ZC3H15 ENSG00000065548.18 protein_coding + + chr2:186486253-186509361:+ chr2:186495233:+ chr2:187350980-187374088:+ chr2:187359960:+ chr2:186600774,chr2:186600772 chr2:186491721,chr2:186491716 NA NA chr2:187465501,chr2:187465499 chr2:187356448,chr2:187356443 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FG-GAP|66-84|0.38^FG-GAP_3|176-181|5 Torus|94-134|1.3e-08^zf-CCCH|100-124|4e-10^zf-CCCH_4|104-124|3.6e-09^zf-CCCH_3|104-124|0.00042^zf_CCCH_4|105-123|8.7e-10^zf-CCCH_2|105-123|5.5e-07^DFRP_C|127-175|0.084^Torus|150-214|0.01^zf-CCCH|179-185|0.73^zf-CCCH_4|179-185|0.15^zf_CCCH_4|180-184|0.79^zf-CCCH_3|189-210|0.041^zf-CCCH_2|198-210|0.023^zf-CCCH_4|202-209|0.89^zf_CCCH_4|205-209|1.8^DFRP_C|229-313|2.2e-27^DFRP_C|383-383|1.7 ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.08Mb];LOCAL_REARRANGEMENT:+:[80702] 38 15 38 15 ONLY_REF_SPLICE YES_LDAS 0.5255 GT 1.7465 AG 1.9656 ENST00000696937.1 1-185 ENST00000337859.11 76-1281 chr2|+|[0]186590339-186590523[1]<==>chr2|+|[0]186495233-186495334[2]|[0]186500182-186500293[0]|[1]186501273-186501425[0]|[1]186502496-186502587[2]|[0]186504032-186504214[2]|[0]186505451-186505597[2]|[0]186505740-186505841[2]|[0]186506713-186506836[0]|[1]186508543-186508733[2] atggcttttccgccgcggcgacggctgcgcctcggtccccgcggcctcccgcttcttctctcgggactcctgctacctctgtgccgcgccttcaacctagacgtggacagtcctgccgagtactctggccccgagggaagttacttcggcttcgccgtggatttcttcgtgcccagcgcgtcttcGACAAAACTTTCGGTTTGAAGAATAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACACATCAAGTTAAATTTGGTCAACAAAATCCACGTCAGGTAGCACAGAGTGAAGCTGAAAAGAAATTGAAGAAGGATGACAAGAAGAAAGAATTGCAGGAGCTAAATGAGCTGTTCAAACCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCAGATCCCAAGTCTGTAGTATGTGCATTCTTCAAGCAAGGACAGTGTACTAAAGGAGATAAGTGTAAGTTCTCCCATGACTTGACTCTGGAGAGAAAATGTGAAAAGCGAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGATAATTGGGATGAGAAAAAGCTGGAAGAAGTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTGTGCAAGCATTTCCTGGAAGCTATTGAAAACAACAAGTATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATATTTGCATGTATCGTCATGCACTTCCTCCTGGATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCATTAGAAGATCTAATTGAGAGAGAGCGTTCTGCCCTAGGTCCAAATGTTACCAAAATCACTCTAGAATCTTTTCTTGCCTGGAAGAAAAGGAAAAGACAAGAAAAGATTGATAAACTTGAACAAGATATGGAAAGAAGGAAAGCTGACTTCAAAGCAGGGAAAGCACTAGTGATCAGTGGTCGTGAAGTGTTTGAATTTCGTCCTGAACTGGTCAATGATGATGATGAGGAAGCAGATGATACCCGCTACACCCAGGGAACAGGTGGTGATGAGGTTGATGATTCAGTGAGTGTAAATGACATAGATTTAAGCCTGTACATCCCAAGAGATGTAGATGAAACAGGTATTACTGTAGCCAGTCTTGAAAGATTCAGCACATATACTTCAGATAAAGATGAAAACAAATTAAGTGAAGCTTCTGGAGGTAGGGCTGAAAATGGTGAAAGAAGTGACTTGGAAGAGGACAACGAGAGGGAGGGAACGGAAAATGGAGCCATTGATGCTGTTCCTGTTGATGAAAATCTTTTCACTGGAGAGGATTTGGATGAACTAGAAGAAGAATTAAATACACTTGATTTAGAAGAATGA MAFPPRRRLRLGPRGLPLLLSGLLLPLCRAFNLDVDSPAEYSGPEGSYFGFAVDFFVPSASSTKLSV*RIRKEQSNRSLSRLSHIKLNLVNKIHVR*HRVKLKRN*RRMTRRKNCRS*MSCSNL*LLLKK*VKVQIPSL*YVHSSSKDSVLKEISVSSPMT*LWRENVKSEVFTLMQEMKNLKKILWIIGMRKSWKK**TRSTVRRKRKNQKLK*CASISWKLLKTTSMAGFGYALEGVIFACIVMHFLLDLC*KKIKRKKRKKMKFH*KI*LRESVLP*VQMLPKSL*NLFLPGRKGKDKKRLINLNKIWKEGKLTSKQGKH**SVVVKCLNFVLNWSMMMMRKQMIPATPREQVVMRLMIQ*V*MT*I*ACTSQEM*MKQVLL*PVLKDSAHILQIKMKTN*VKLLEVGLKMVKEVTWKRTTRGRERKMEPLMLFLLMKIFSLERIWMN*KKN*IHLI*KN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE integrin subunit alpha V 2 large intestine carcinoma epithelial frameshift FALSE NA NA NA NA NA NA NA NA NA 31969 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1744 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36583712:+ chr9:36572859-36677680:+ chr9:36583709:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|11-88|2.6e-18^PK_Tyr_Ser-Thr|12-89|1e-11^Pkinase-PARTIAL|90-144~|4.5e-27^PK_Tyr_Ser-Thr-PARTIAL|99-144~|1.6e-10^Kinase-like-PARTIAL|118-144~|2.6e-05 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.44Mb] 31 231 31 63.21 ONLY_REF_SPLICE YES_LDAS 0.9342 GT 1.6729 AG 1.5058 ENST00000545008.5 1-144 ENST00000534928.5 611-1632 chr9|+|[0]36581682-36581739[0]|[1]36583627-36583712[2]<==>chr9|+|[1]37302188-37302231[2]|[0]37304188-37304313[2]|[0]37305544-37305714[2]|[0]37327799-37327834[2]|[0]37349357-37349452[2]|[0]37354710-37354824[0]|[1]37356835-37357268[2] atgaaagattatgatgaacttctcaaatattatgaattacatgaaactattgggacaggtggctttgcaaaggtcaaacttgcctgccatatccttactggagagatggtagctataaaaatcatggataaaaacacactagggGAGAAGATGGTATAAACTGGTCCATCAGTGACAAAGACATTGAGGCCCAGATAGCTAATAACCGAACACCTGGAAGATGGACCCAGCGGTACTATTCAGCCAACAAAAACATTATCTGTAGAAATTGTGACAAACGTGGTCATTTATCAAAAAACTGCCCCTTACCACGAAAAGTTCGTCGCTGCTTCCTGTGCTCCAGGAGAGGACATCTCCTGTATTCCTGTCCAGCCCCCCTTTGCGAATACTGTCCTGTGCCTAAGATGTTGGACCACTCATGTCTTTTCAGACATTCCTGGGATAAACAGTGTGACCGATGTCATATGCTAGGCCACTATACAGATGCTTGCACAGAAATCTGGAGGCAGTATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCGAAGACCCCTTCAAGACCATCAGCCTTAGCATATTGCTATCACTGCGCGCAAAAAGGCCATTATGGACACGAATGTCCAGAAAGAGAAGTGTATGACCCGTCTCCAGTATCTCCATTCATCTGCTACTATGATGACAAATATGAAATTCAGGAGAGAGAAAAGAGACTAAAACAAAAAATAAAAGTACTCAAGAAAAATGGGGTTATCCCAGAGCCATCCAAGCTACCTTATATAAAAGCAGCAAATGAGAACCCCCACCATGATATAAGGAAGGGCCGTGCCTCATGGAAAAGCAACAGGTGGCCTCAAGAAAATAAAGAAACACAAAAAGAAATGAAGAACAAGAATAGAAACTGGGAGAAGCACAGGAAGGCTGACAGACATCGTGAAGTGGATGAGGATTTTCCCAGGGGCCCCAAAACCTACTCTTCTCCTGGCAGTTTTAAAACCCAGAAGCCTTCTAAGCCCTTTCACCGTTCATCACATTACCACACGTCAAGAGAAGACAAGTCTCCCAAGGAAGGCAAGAGGGGCAAGCAGAAGAAAAAGGAGAGGTGCTGGGAAGATGATGACAATGATAACTTATTTCTTATTAAGCAGAGAAAAAAAAAGTCTTAA MKDYDELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGEKMV*TGPSVTKTLRPR*LITEHLEDGPSGTIQPTKTLSVEIVTNVVIYQKTAPYHEKFVAASCAPGEDISCIPVQPPFANTVLCLRCWTTHVFSDIPGINSVTDVIC*ATIQMLAQKSGGSIT*RPNLDHPKSRRPLQDHQP*HIAITARKKAIMDTNVQKEKCMTRLQYLHSSATMMTNMKFRREKRD*NKK*KYSRKMGLSQSHPSYLI*KQQMRTPTMI*GRAVPHGKATGGLKKIKKHKKK*RTRIETGRSTGRLTDIVKWMRIFPGAPKPTLLLAVLKPRSLLSPFTVHHITTRQEKTSLPRKARGASRRKRRGAGKMMTMITYFLLSREKKSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31970 MELK::ZCCHC7 ENSG00000165304.8::ENSG00000147905.18 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1745 TRUE 3203 TRUE 1208 MELK ENSG00000165304.8 protein_coding + + chr9:36572862-36677683:+ chr9:36573007:+ chr9:36572859-36677680:+ chr9:36573004:+ ZCCHC7 ENSG00000147905.18 protein_coding + + chr9:37120574-37358149:+ chr9:37302188:+ chr9:37120571-37358146:+ chr9:37302185:+ chr9:36585126,chr9:36585125 chr9:37290383,chr9:37290379 NA NA chr9:36585123,chr9:36585122 chr9:37290380,chr9:37290376 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.44Mb] 20 121 20 9.34 ONLY_REF_SPLICE YES_LDAS 0.2909 GT 1.4256 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Maternal embryonic leucine zipper kinase CAMK CAMKL MELK Q14680 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31971 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1747 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20294376:- chr2:20448452-20551995:- chr2:20494137:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27870890:- chr2:28004246-28113548:- chr2:28093757:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PC4|23-46|7.8e-05^CPL|729-768|1^PUF|730-764|6.2e-17^PUF|768-795|1.8e-10^CPL|797-856|0.007^PUF|802-828|7.9e-11^Ku_PK_bind|825-862|0.0003^PUF|840-871|1e-09^PUF|876-910|8.9e-18^Rad26-like_N|890-913|7.9e-05^CPL|904-930|0.026^CPL|904-945|0.0021^Ku_PK_bind|905-931|0.7^PUF|915-945|8.9e-14^CPL|942-1011|0.044^PUF|949-982|5e-12^PUF|993-1024|1.7e-11 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:7.43Mb] 19 28 19 11.51 ONLY_REF_SPLICE YES_LDAS 0.3025 GT 1.8256 AG 1.7465 ENST00000704930.1 1-1152 ENST00000449378.1 90-192 chr2|-|[2]20294376-20294518[1]|[0]20297553-20297678[1]|[0]20307978-20308071[0]|[2]20308314-20308584[2]|[1]20311494-20311663[0]|[2]20312236-20312423[1]|[0]20318537-20318645[0]|[2]20327310-20327360[0]<==>chr2|-|[2]27870788-27870890[2] atgaatcatgattttcaagctcttgcattagaatctcggggaatgggagagcttttgcctaccaaaaagttttgggaacctgatgattcaacaaaagatggacaaaaaggcatatttcttggggatgatgaatggagagagactgcatggggagcttctcaccattcaatgtcccagcctattatggtacagagaagatctggacagggttttcatggaaacagtgaagtaaatgcaatactgtctccgcgatcagaaagtggaggccttggtgtgagcatggtagaatatgtattaagttcttctcctgctgataaattggattctcgatttaggaagggaaattttggcactagagatgctgaaacagatggacctgagaaaggagatcaaaaaggcaaggcttctccatttgaggaggaccaaaacagagatcttaaacaaggagatgatgatgattctaaaataaatggcagaggtttgccaaatggaatggatgccgattgcaaagattttaatcgtactcctggaagtcgtcaagcctctccaactgaagtagttgagcgcttgggccccaatactaatccctcagaaggactggggcctcttcctaatcctacagctaataaaccacttgttgaagaattttcaaatcctgaaactcagaatctggatgccatggaacaagttggtctggaatccttacagtttgactatcctggtaatcaggtaccaatggactcttcaggagctactgtaggcctttttgactacaattcccagcagcagctctttcagaggactaatgcactaacagttcaacagttaactgcagctcaacagcagcaatatgcattagcagcagctcagcagccacatatagctggtgtattctcagcaggccttgctccagctgcatttgtgccaaatccatacattattagtgctgctcctccagggaccgatccgtatactgcagcaggattggctgcagcagctacattagcaggtccagcagtggttccacctcagtattacggcgttccatggggggtgtatccagccaacttatttcagcagcaagctgcagctgcggcaaataacacagccagtcagcaagcagcatcacaagctcagcctggacagcaacagGAGGATGTGCATGAGGATATGTTATGTGCACTTTTGTTGCCAGCCCACACCACAGCTGCAGAACTGTTCAAGTCTTTGCGTGATTACATGTCAGGAAAACTGA MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQEDVHEDMLCALLLPAHTTAAELFKSLRDYMSGKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31972 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1748 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20290652:- chr2:20448452-20551995:- chr2:20490413:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27858571:- chr2:28004246-28113548:- chr2:28081438:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PC4|23-46|7.8e-05^CPL|729-768|1^PUF|730-764|6.2e-17^PUF|768-795|1.8e-10^CPL|797-856|0.007^PUF|802-828|7.9e-11^Ku_PK_bind|825-862|0.0003^PUF|840-871|1e-09^PUF|876-910|8.9e-18^Rad26-like_N|890-913|7.9e-05^CPL|904-930|0.026^CPL|904-945|0.0021^Ku_PK_bind|905-931|0.7^PUF|915-945|8.9e-14^CPL|942-1011|0.044^PUF|949-982|5e-12^PUF|993-1024|1.7e-11 PfkB-PARTIAL|~90-312|2.4e-67^Phos_pyr_kin|181-282|3.9e-11 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:7.43Mb] 17 21 17 6.09 ONLY_REF_SPLICE YES_LDAS 0.229 GT 1.9656 AG 1.4716 ENST00000704930.1 1-1291 ENST00000302188.8 90-969 chr2|-|[0]20290652-20290790[0]|[2]20294376-20294518[1]|[0]20297553-20297678[1]|[0]20307978-20308071[0]|[2]20308314-20308584[2]|[1]20311494-20311663[0]|[2]20312236-20312423[1]|[0]20318537-20318645[0]|[2]20327310-20327360[0]<==>chr2|-|[2]27781615-27781788[0]|[2]27827567-27827755[0]|[2]27832686-27832777[1]|[0]27843067-27843231[1]|[0]27847042-27847104[1]|[0]27848034-27848097[0]|[2]27858439-27858571[2] atgaatcatgattttcaagctcttgcattagaatctcggggaatgggagagcttttgcctaccaaaaagttttgggaacctgatgattcaacaaaagatggacaaaaaggcatatttcttggggatgatgaatggagagagactgcatggggagcttctcaccattcaatgtcccagcctattatggtacagagaagatctggacagggttttcatggaaacagtgaagtaaatgcaatactgtctccgcgatcagaaagtggaggccttggtgtgagcatggtagaatatgtattaagttcttctcctgctgataaattggattctcgatttaggaagggaaattttggcactagagatgctgaaacagatggacctgagaaaggagatcaaaaaggcaaggcttctccatttgaggaggaccaaaacagagatcttaaacaaggagatgatgatgattctaaaataaatggcagaggtttgccaaatggaatggatgccgattgcaaagattttaatcgtactcctggaagtcgtcaagcctctccaactgaagtagttgagcgcttgggccccaatactaatccctcagaaggactggggcctcttcctaatcctacagctaataaaccacttgttgaagaattttcaaatcctgaaactcagaatctggatgccatggaacaagttggtctggaatccttacagtttgactatcctggtaatcaggtaccaatggactcttcaggagctactgtaggcctttttgactacaattcccagcagcagctctttcagaggactaatgcactaacagttcaacagttaactgcagctcaacagcagcaatatgcattagcagcagctcagcagccacatatagctggtgtattctcagcaggccttgctccagctgcatttgtgccaaatccatacattattagtgctgctcctccagggaccgatccgtatactgcagcaggattggctgcagcagctacattagcaggtccagcagtggttccacctcagtattacggcgttccatggggggtgtatccagccaacttatttcagcagcaagctgcagctgcggcaaataacacagccagtcagcaagcagcatcacaagctcagcctggacagcaacaggttctccgtgctggagcaggtcagcgtcctcttactcccaatcagggtcagcaagggcagcaagcagaatcacttgcggcagctgcagcagcaaatccaacattggcttttggtcagggtcttgctactggcatgccagTCTTACTTCTCGTTTGCCAAAAACTGGAGAAACCATCCATGGACATAAGTTTTTTATTGGCTTTGGAGGGAAAGGTGCCAACCAGTGTGTCCAAGCTGCTCGGCTTGGAGCAATGACGTCCATGGTGTGTAAGGTTGGCAAAGATTCTTTTGGCAATGATTATATAGAAAACTTAAAACAGAATGATATTTCTACAGAATTTACATATCAGACTAAAGATGCTGCTACAGGAACTGCTTCTATAATTGTCAATAATGAAGGCCAGAATATCATTGTCATAGTGGCTGGAGCAAATTTACTTTTGAATACGGAGGATCTGAGGGCAGCAGCCAATGTCATTAGCAGAGCCAAAGTCATGGTCTGCCAGCTCGAAATAACTCCAGCAACTTCTTTGGAAGCCCTAACAATGGCCCGCAGGAGTGGAGTGAAAACCTTGTTCAATCCAGCCCCTGCCATTGCTGACCTGGATCCCCAGTTCTACACCCTCTCAGATGTGTTCTGCTGCAATGAAAGTGAGGCTGAGATTTTAACTGGCCTCACGGTGGGCAGCGCTGCAGATGCTGGGGAGGCTGCATTAGTGCTCTTGAAAAGGGGCTGCCAGGTGGTAATCATTACCTTAGGGGCTGAAGGATGTGTGGTGCTGTCACAGACAGAACCTGAGCCAAAGCACATTCCCACAGAGAAAGTCAAGGCTGTGGATACCACGGGTGCTGGTGACAGCTTTGTGGGAGCTCTGGCCTTCTACCTGGCTTACTATCCAAATCTGTCCTTGGAAGACATGCTCAACAGATCCAATTTCATTGCAGCAGTCAGTGTCCAGGCTGCAGGAACACAGTCATCTTACCCTTACAAAAAAGACCTTCCGCTTACTCTGTTTTGA MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPVLLLVCQKLEKPSMDISFLLALEGKVPTSVSKLLGLEQ*RPWCVRLAKILLAMII*KT*NRMIFLQNLHIRLKMLLQELLL*LSIMKARISLS*WLEQIYF*IRRI*GQQPMSLAEPKSWSASSK*LQQLLWKP*QWPAGVE*KPCSIQPLPLLTWIPSSTPSQMCSAAMKVRLRF*LASRWAALQMLGRLH*CS*KGAARW*SLP*GLKDVWCCHRQNLSQSTFPQRKSRLWIPRVLVTALWELWPSTWLTIQICPWKTCSTDPISLQQSVSRLQEHSHLTLTKKTFRLLCF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31977 PUM2::RBKS ENSG00000055917.17::ENSG00000171174.15 DANG SRR8615959 SRR8788980 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1746 TRUE 3204 TRUE 1209 PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20290652:- chr2:20448452-20551995:- chr2:20490413:- RBKS ENSG00000171174.15 protein_coding - - chr2:27781379-27890681:- chr2:27870890:- chr2:28004246-28113548:- chr2:28093757:- chr2:20289969,chr2:20289991 chr2:27875895,chr2:27875913 NA NA chr2:20489730,chr2:20489752 chr2:28098762,chr2:28098780 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PC4|23-46|7.8e-05^CPL|729-768|1^PUF|730-764|6.2e-17^PUF|768-795|1.8e-10^CPL|797-856|0.007^PUF|802-828|7.9e-11^Ku_PK_bind|825-862|0.0003^PUF|840-871|1e-09^PUF|876-910|8.9e-18^Rad26-like_N|890-913|7.9e-05^CPL|904-930|0.026^CPL|904-945|0.0021^Ku_PK_bind|905-931|0.7^PUF|915-945|8.9e-14^CPL|942-1011|0.044^PUF|949-982|5e-12^PUF|993-1024|1.7e-11 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:7.43Mb] 11 36 11 15.55 ONLY_REF_SPLICE YES_LDAS 0.2633 GT 1.9656 AG 1.7465 ENST00000704930.1 1-1291 ENST00000449378.1 90-192 chr2|-|[0]20290652-20290790[0]|[2]20294376-20294518[1]|[0]20297553-20297678[1]|[0]20307978-20308071[0]|[2]20308314-20308584[2]|[1]20311494-20311663[0]|[2]20312236-20312423[1]|[0]20318537-20318645[0]|[2]20327310-20327360[0]<==>chr2|-|[2]27870788-27870890[2] atgaatcatgattttcaagctcttgcattagaatctcggggaatgggagagcttttgcctaccaaaaagttttgggaacctgatgattcaacaaaagatggacaaaaaggcatatttcttggggatgatgaatggagagagactgcatggggagcttctcaccattcaatgtcccagcctattatggtacagagaagatctggacagggttttcatggaaacagtgaagtaaatgcaatactgtctccgcgatcagaaagtggaggccttggtgtgagcatggtagaatatgtattaagttcttctcctgctgataaattggattctcgatttaggaagggaaattttggcactagagatgctgaaacagatggacctgagaaaggagatcaaaaaggcaaggcttctccatttgaggaggaccaaaacagagatcttaaacaaggagatgatgatgattctaaaataaatggcagaggtttgccaaatggaatggatgccgattgcaaagattttaatcgtactcctggaagtcgtcaagcctctccaactgaagtagttgagcgcttgggccccaatactaatccctcagaaggactggggcctcttcctaatcctacagctaataaaccacttgttgaagaattttcaaatcctgaaactcagaatctggatgccatggaacaagttggtctggaatccttacagtttgactatcctggtaatcaggtaccaatggactcttcaggagctactgtaggcctttttgactacaattcccagcagcagctctttcagaggactaatgcactaacagttcaacagttaactgcagctcaacagcagcaatatgcattagcagcagctcagcagccacatatagctggtgtattctcagcaggccttgctccagctgcatttgtgccaaatccatacattattagtgctgctcctccagggaccgatccgtatactgcagcaggattggctgcagcagctacattagcaggtccagcagtggttccacctcagtattacggcgttccatggggggtgtatccagccaacttatttcagcagcaagctgcagctgcggcaaataacacagccagtcagcaagcagcatcacaagctcagcctggacagcaacaggttctccgtgctggagcaggtcagcgtcctcttactcccaatcagggtcagcaagggcagcaagcagaatcacttgcggcagctgcagcagcaaatccaacattggcttttggtcagggtcttgctactggcatgccagGAGGATGTGCATGAGGATATGTTATGTGCACTTTTGTTGCCAGCCCACACCACAGCTGCAGAACTGTTCAAGTCTTTGCGTGATTACATGTCAGGAAAACTGA MNHDFQALALESRGMGELLPTKKFWEPDDSTKDGQKGIFLGDDEWRETAWGASHHSMSQPIMVQRRSGQGFHGNSEVNAILSPRSESGGLGVSMVEYVLSSSPADKLDSRFRKGNFGTRDAETDGPEKGDQKGKASPFEEDQNRDLKQGDDDDSKINGRGLPNGMDADCKDFNRTPGSRQASPTEVVERLGPNTNPSEGLGPLPNPTANKPLVEEFSNPETQNLDAMEQVGLESLQFDYPGNQVPMDSSGATVGLFDYNSQQQLFQRTNALTVQQLTAAQQQQYALAAAQQPHIAGVFSAGLAPAAFVPNPYIISAAPPGTDPYTAAGLAAAATLAGPAVVPPQYYGVPWGVYPANLFQQQAAAAANNTASQQAASQAQPGQQQVLRAGAGQRPLTPNQGQQGQQAESLAAAAAANPTLAFGQGLATGMPGGCA*GYVMCTFVASPHHSCRTVQVFA*LHVRKT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31980 PCGF2::PIP4K2B ENSG00000277258.5::ENSG00000276293.5 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1752 FALSE NA FALSE NA PCGF2 ENSG00000277258.5 protein_coding - - chr17:38733898-38749817:- chr17:38738353:- chr17:36890151-36906070:- chr17:36894606:- PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38786920:- chr17:36921944-36956379:- chr17:36943173:- chr17:38738172,chr17:38738174,chr17:38738180 chr17:38796446,chr17:38796445,chr17:38796445 NA NA chr17:36894425,chr17:36894427,chr17:36894433 chr17:36952699,chr17:36952698,chr17:36952698 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-Nse|8-56|7.6e-05^zinc_ribbon_15|8-56|0.00019^zf-RING_10|16-57|0.00014^zf-C3HC4_2|17-56|1.4e-13^zf-RING_2|17-56|1.3e-09^zf-C3HC4_3|17-62|6.4e-08^zf-C3HC4|18-56|7.6e-13^zf-RING_UBOX|18-54|7.1e-07^zf-RING_5|18-57|9.7e-07^zf-C3HC4_4|18-56|8e-05^Prok-RING_4|18-65|0.00059^zf-rbx1|31-56|1.6e-08^zf-ANAPC11|31-58|0.00014^RAWUL|164-228|1e-28^Rad60-SLD|170-210|0.00019 PIP5K-PARTIAL|~160-414|1.8e-86 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_REARRANGEMENT:-:[15872] 53 49 53 49 ONLY_REF_SPLICE YES_LDAS 1.2347 GT 1.7819 AG 1.9656 ENST00000616199.4 1-576 ENST00000619039.5 160-1251 chr17|-|[2]38738353-38738448[0]|[2]38738541-38738595[2]|[1]38738753-38738861[1]|[0]38739068-38739118[1]|[0]38739198-38739253[2]|[1]38739586-38739682[1]|[0]38740291-38740402[0]<==>chr17|-|[2]38769691-38769771[0]|[2]38770436-38770539[1]|[0]38771014-38771272[0]|[2]38777687-38777800[0]|[2]38778334-38778372[0]|[2]38779383-38779529[0]|[2]38780452-38780604[0]|[2]38784243-38784339[2]|[1]38786823-38786920[0] atgcatcggactacacggatcaaaatcacagagctgaacccccacctcatgtgtgccctctgcggggggtacttcatcgacgccaccactatcgtggagtgcctgcattccttctgcaaaacctgcatcgtgcgctacctggagaccaacaaatactgccccatgtgtgacgtgcaggtccataaaacccggccgctgctgagcatcaggtctgacaaaacacttcaagacattgtctacaaattggtccctgggctttttaaagatgagatgaaacggcggcgggatttctatgcagcgtaccccctgacggaggtccccaacggctccaatgaggaccgcggcgaggtcttggagcaggagaagggggctctgagtgatgatgagattgtcagcctctccatcgaattctacgaaggtgccagggaccgggacgagaagaagggccccctggagaatggggatggggacaaagagaaaacaggggtgcgcttcctgcgatgcccagcagccatgaccgtcatgcatcttgccaagtttctccgcaacaagatggatgtgcccagcaagtacaagATCAATGAGCTGAGCAATGTTCCTGTTCCTGTCATGCTAATGCCAGATGACTTCAAAGCCTACAGCAAGATCAAGGTGGACAATCATCTCTTCAATAAGGAGAACCTGCCCAGCCGCTTTAAGTTTAAGGAGTATTGCCCCATGGTGTTCCGAAACCTTCGGGAGAGGTTTGGAATTGATGATCAGGATTACCAGAATTCAGTGACGCGCAGCGCCCCCATCAACAGTGACAGCCAGGGTCGGTGTGGCACGCGTTTCCTCACCACCTACGACCGGCGCTTTGTCATCAAGACTGTGTCCAGCGAGGACGTGGCGGAGATGCACAACATCTTAAAGAAATACCACCAGTTTATAGTGGAGTGTCATGGCAACACGCTTTTGCCACAGTTCCTGGGCATGTACCGCCTGACCGTGGATGGTGTGGAAACCTACATGGTGGTTACCAGGAACGTGTTCAGCCATCGGCTCACTGTGCATCGCAAGTATGACCTCAAGGGTTCTACGGTTGCCAGAGAAGCGAGCGACAAGGAGAAGGCCAAGGACTTGCCAACATTCAAAGACAATGACTTCCTCAATGAAGGGCAGAAGCTGCATGTGGGAGAGGAGAGTAAAAAGAACTTCCTGGAGAAACTGAAGCGGGACGTTGAGTTCTTGGCACAGCTGAAGATCATGGACTACAGCCTGCTGGTGGGCATCCACGACGTGGACCGGGCAGAGCAGGAGGAGATGGAGGTGGAGGAGCGGGCAGAGGACGAGGAGTGTGAGAATGATGGGGTGGGTGGCAACCTACTCTGCTCCTATGGCACACCTCCGGACAGCCCTGGCAACCTCCTCAGCTTTCCTCGGTTCTTTGGTCCTGGGGAATTCGACCCCTCTGTTGACGTCTATGCCATGAAAAGCCATGAAAGTTCCCCCAAGAAGGAGGTGTATTTCATGGCCATCATTGATATCCTCACGCCATACGATACAAAGAAGAAAGCTGCACATGCTGCCAAAACGGTGAAACACGGGGCAGGGGCCGAGATCTCGACTGTGAACCCTGAGCAGTACTCCAAACGCTTCAACGAGTTTATGTCCAACATCCTGACGTAG MHRTTRIKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLETNKYCPMCDVQVHKTRPLLSIRSDKTLQDIVYKLVPGLFKDEMKRRRDFYAAYPLTEVPNGSNEDRGEVLEQEKGALSDDEIVSLSIEFYEGARDRDEKKGPLENGDGDKEKTGVRFLRCPAAMTVMHLAKFLRNKMDVPSKYKINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAEDEECENDGVGGNLLCSYGTPPDSPGNLLSFPRFFGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFMSNILT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31983 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1753 TRUE 3216 TRUE 1210 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59910316,chr17:59910313 chr17:59831456,chr17:59831450 NA NA chr17:57987677,chr17:57987674 chr17:57908817,chr17:57908811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2-PARTIAL|90-141~|0.015^Pkinase-PARTIAL|91-141~|2.5e-74^PK_Tyr_Ser-Thr-PARTIAL|92-141~|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 20 34 20 24.29 ONLY_REF_SPLICE YES_LDAS 0.5361 GT 1.3753 AG 1.8062 ENST00000406116.7 1-141 ENST00000710770.1 1057-1188 chr17|+|[0]59893185-59893325[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31985 EP400::PGAM5 ENSG00000183495.15::ENSG00000247077.8 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1755 FALSE NA FALSE NA EP400 ENSG00000183495.15 protein_coding + + chr12:131949942-132080460:+ chr12:132011634:+ chr12:132434487-132565005:+ chr12:132496179:+ PGAM5 ENSG00000247077.8 protein_coding + + chr12:132710819-132722734:+ chr12:132714858:+ chr12:133287405-133299320:+ chr12:133291444:+ chr12:132012669,chr12:132012670 chr12:132712366,chr12:132712364 NA NA chr12:132497214,chr12:132497215 chr12:133288952,chr12:133288950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EP400_N|1-451|5.3e-238^HSA|360-382|2.3^HSA|424-438|9^EP400_N|447-469|0.0029^EP400_N|585-646|9^EP400_N|694-726|4.9^HSA|767-834|7.6e-24^Myb_DNA-bind_4|794-838|1.8^Myb_DNA-bind_6|824-853|6.9^HSA|836-868|0.46^SNF2-rel_dom|1058-1337|3.4e-63^HDA2-3|1285-1304|1.1^EP400_N|1497-1544|9^HDA2-3|1860-1999|2.4e-06^Helicase_C|1863-1976|3.1e-16^HSA|2137-2148|9^Myb_DNA-bind_4|2331-2393|1.5e-05^Myb_DNA-binding|2332-2392|2.7e-05^Myb_DNA-bind_6|2336-2395|2.9e-06^HSA|2482-2494|9^EP400_N|2562-2664|9^EOS1|2677-2751|0.0044^EP400_N|2723-2761|9^HSA|2730-2735|9^SNF2-rel_dom|2731-2742|7.7^EP400_N|2851-2918|9^EP400_N|2993-3088|9 His_Phos_1-PARTIAL|~192-272|8.6e-22 ["EP400:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.63Mb] 16 15 16 13.08 ONLY_REF_SPLICE YES_LDAS 0.352 GT 1.3383 AG 1.9329 ENST00000389561.7 1-3441 ENST00000498926.7 192-870 chr12|+|[0]131960620-131961954[2]|[0]131979694-131979793[0]|[1]131981489-131981596[0]|[1]131982093-131982478[2]|[0]131986514-131986807[2]|[0]131987705-131987890[2]|[0]131989964-131990104[2]|[0]131990636-131990714[0]|[1]131991407-131991456[2]|[0]131992173-131992230[0]|[1]131994867-131994956[0]|[1]132005077-132005184[0]|[1]132006112-132006302[2]|[0]132006700-132006877[0]|[1]132011498-132011634[2]<==>chr12|+|[2]132714858-132715036[0]|[1]132717439-132717564[0]|[1]132717710-132717798[2]|[0]132717987-132718120[1]|[2]132720678-132720828[2] atgcaccatggcactggcccccagaacgtccagcatcagctgcagaggtccagggcctgccctggcagcgagggtgaggagcagccggcccaccccaacccacccccgtcccccgcagctcccttcgctccctcagcaagcccgtcggcaccccagtctcccagttatcaaatacagcagctgatgaataggagccctgcaaccgggcagaacgtgaacatcaccctgcagagcgtgggccctgtcgtcgggggaaaccagcagatcacactggccccactgccgctccccagccccacctctccaggcttccagttcagcgctcagcctcggcggtttgagcatgggtctccatcatacattcaggtcacgtcccccttgtcccagcaggtccagacccagagtcccacgcagcccagtccggggccggggcaggccttgcagaatgtgcgtgcaggtgcccctggccctgggctgggcctctgcagcagcagccctacagggggcttcgtggatgccagcgtgctggtgaggcagatcagcttgagcccctccagtggtggacactttgtgtttcaggatgggtcagggctcacccagatcgcccagggagcccaggttcagctccagcacccgggtacgcccatcacagtccgagagcggagaccctcccagccccacacacagtcagggggcaccatccaccacctgggaccccagagccctgcagccgcgggtggggccggcctgcagcccctggccagcccaagccacatcaccacggctaacttgccaccgcagatcagcagcatcatccagggccagctggttcagcagcagcaggtgctgcaggggccgccgctgccccggcccctgggcttcgagaggacacccggcgtgctgctccccggggctgggggcgcagcggggtttgggatgacgtccccacccccgcccaccagcccttccaggactgccgtgcccccaggcctttccagcctcccactcacgtctgtggggaacacgggaatgaagaaggttcccaagaagttagaggagattcccccagcctctccggagatggcacagatgaggaagcagtgcctggactatcattaccaggagatgcaggctctgaaggaggtcttcaaggagtatttgattgaactgtttttcttgcaacactttcaagggaacatgatggatttcttagctttcaagaagaaacattatgccccattacaagcatatcttaggcagaatgatttggacattgaagaagaggaggaggaggaggaagaggaggaagaaaaatctgaggttatcaatgacgagcagcaagccctcgcagggagcctggtagcaggggccggaagcacagtagagacggacctgtttaagaggcagcaggcgatgccctccacaggtatggcagagcagtctaagaggcctcgccttgaagtgggtcaccaaggggtagttttccagcacccaggggcggacgcaggcgttcctctccagcaactaatgccgaccgcacaaggaggaatgccccccacgccgcaggccgcgcagctcgctggacagaggcagagtcagcagcagtatgacccctccacggggcctcccgtgcagaacgctgccagcttgcacaccccactgccgcagctgcccgggaggctgcccccagccggtgttcccactgcagccctctcctctgcgctgcagtttgcacagcagccgcaagtggtagaggcccagacacagctccaaatcccggtgaagactcagcagcccaatgttcccatccctgcaccgcccagcagccaactccccatccctccctcgcagcctgcacagctggccctccacgttcccacacctggaaaggtgcaggtgcaggcctctcagctttcctccctgccacagatggtagcatcgacaaggctccctgtggaccctgccccgccctgcccacggcctctgcccacctcttctacctcgtccctcgcgcctgtgagtggctccggcccaggaccctcccctgctcgatcctctccagtaaatagaccttcctcagccaccaataaggcactatctccagtcacttcccggaccccaggggtggtggcatctgcccccaccaaaccacagagtcctgctcagaatgccacctcgtcccaagacagttctcaggatacgctgacagaacaaataactctggagaaccaggtgcatcagcgcattgcggagctgaggaaagcaggtctgtggtcccagaggcgtctgccaaagctgcaggaggccccacgccccaagtcccactgggactatctgctggaggagatgcagtggatggccacagactttgcccaggagaggaggtggaaggtggctgctgcgaagaagctcgttagaactgtggtgcgccatcacgaggagaagcagctccgtgaagaaagggggaagaaggaagagcagagcagactgaggcggatagccgcctccacggcccgggagatagagtgcttttggtcgaatattgaacaggttgtggaaataaaactacgagtagaattagaagaaaaaaggaagaaggccttaaatttacagaaagtttccaggagagggaaagaattgagacctaaaggatttgacgcattacaggaaagttctctggattcaggaatgtctggaagaaaaagaaaagctagcatatctttgactgatgacgaagtggacgatgaagaggaaacaattgaagaggaggaagcaaatgaaggcgttgtggaccaccaaacagaactttctaatttagccaaggaagctgagctgcccctcctggacctgatgaagctgtacgaaggcgccttcctgccgagttctcagtggccccggccgaagcctgatggggaggacacaagcggagaggaagatgcagatgactgtccaggcgacagggagagtcgcaaggacttggttctcatcgactcgcttttcatcatggatcagttcaaagctgccgagaggatgaatatcgggaagccaaacgccaaggacattgcggacgtcactgcggtggctgaagccatcctgccgaagggcagtgctcgggtcacaacctcggtcaagtttaatgctccatctttgttgtatggggctctcagagattatcagaagattggcctggactggctggccaaactttacaggaagaatctcaatggcatattggcagatgaagctgggctgggtaaaacagtgcagatcattgctttttttgcccacctagcttgtaacgaaggtaattggggcccccatcttgttgttgtgagaagttgtaacatactcaagtgggagcttgaattgaaacgttggtgtcccggactcaaaatcctctcatatattggcagccacagagaactcaaagcaaagagacagGCGAGAACCACTGTCTCTGATCAACGTGCGGAAGAGGAACGTGGAATCTGGGGAAGAAGAGCTGGCGTCCAAGCTGGACCACTACAAAGCCAAGGCCACGCGGCACATCTTCCTCATCAGGCATTCCCAGTACCACGTGGATGGCTCCCTGGAGAAGGACCGCACTCTGACCCCGCTGGGTCGGGAGCAGGCTGAACTCACTGGGCTCCGCCTGGCAAGCTTGGGGTTGAAGTTTAATAAAATCGTCCATTCGTCTATGACGCGCGCCATAGAGACCACCGATATCATCAGCCGGCACCTGCCAGGCGTCTGCAAAGTCAGCACAGATCTGCTGCGGGAAGGCGCCCCCATCGAGCCAGACCCGCCCGTGTCTCATTGGAAGCCGGAAGCTGTGCAGTATTACGAAGACGGAGCCCGGATCGAGGCCGCCTTCCGGAACTACATCCACCGCGCAGATGCCAGGCAGGAGGAGGACAGTTACGAGATCTTCATCTGTCACGCCAACGTCATCCGCTACATCGTGTGCAGAGCACTGCAGTTTCCTCCTGAAGGCTGGCTCCGGCTCTCCCTCAATAATGGCAGCATCACCCACCTGGTGATCCGACCCAACGGCCGAGTTGCGCTCAGGACCCTCGGGGACACGGGGTTCATGCCTCCCGACAAGATCACTCGATCCTGA MHHGTGPQNVQHQLQRSRACPGSEGEEQPAHPNPPPSPAAPFAPSASPSAPQSPSYQIQQLMNRSPATGQNVNITLQSVGPVVGGNQQITLAPLPLPSPTSPGFQFSAQPRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGQALQNVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGGHFVFQDGSGLTQIAQGAQVQLQHPGTPITVRERRPSQPHTQSGGTIHHLGPQSPAAAGGAGLQPLASPSHITTANLPPQISSIIQGQLVQQQQVLQGPPLPRPLGFERTPGVLLPGAGGAAGFGMTSPPPPTSPSRTAVPPGLSSLPLTSVGNTGMKKVPKKLEEIPPASPEMAQMRKQCLDYHYQEMQALKEVFKEYLIELFFLQHFQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEEEEEKSEVINDEQQALAGSLVAGAGSTVETDLFKRQQAMPSTGMAEQSKRPRLEVGHQGVVFQHPGADAGVPLQQLMPTAQGGMPPTPQAAQLAGQRQSQQQYDPSTGPPVQNAASLHTPLPQLPGRLPPAGVPTAALSSALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQLPIPPSQPAQLALHVPTPGKVQVQASQLSSLPQMVASTRLPVDPAPPCPRPLPTSSTSSLAPVSGSGPGPSPARSSPVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATSSQDSSQDTLTEQITLENQVHQRIAELRKAGLWSQRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIECFWSNIEQVVEIKLRVELEEKRKKALNLQKVSRRGKELRPKGFDALQESSLDSGMSGRKRKASISLTDDEVDDEEETIEEEEANEGVVDHQTELSNLAKEAELPLLDLMKLYEGAFLPSSQWPRPKPDGEDTSGEEDADDCPGDRESRKDLVLIDSLFIMDQFKAAERMNIGKPNAKDIADVTAVAEAILPKGSARVTTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQARTTVSDQRAEEERGIWGRRAGVQAGPLQSQGHAAHLPHQAFPVPRGWLPGEGPHSDPAGSGAG*THWAPPGKLGVEV**NRPFVYDARHRDHRYHQPAPARRLQSQHRSAAGRRPHRARPARVSLEAGSCAVLRRRSPDRGRLPELHPPRRCQAGGGQLRDLHLSRQRHPLHRVQSTAVSS*RLAPALPQ*WQHHPPGDPTQRPSCAQDPRGHGVHASRQDHSIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31988 ABR::SLC43A2 ENSG00000159842.16::ENSG00000167703.15 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1756 FALSE NA FALSE NA ABR ENSG00000159842.16 protein_coding - - chr17:1003519-1229738:- chr17:1067077:- chr17:906759-1133032:- chr17:970317:- SLC43A2 ENSG00000167703.15 protein_coding - - chr17:1569268-1628886:- chr17:1586051:- chr17:1472562-1532180:- chr17:1489345:- chr17:1059857,chr17:1056799 chr17:1613306,chr17:1588744 NA NA chr17:963097,chr17:960039 chr17:1516600,chr17:1492038 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Bcr-Abl_Oligo|3-65|3.1e-19^RhoGEF|357-541|3.3e-39^PH_19|558-653|9.1e-10^PH|562-716|1.9e-07^PH_10|562-595|5.4e-05^Bcr-Abl_Oligo|633-654|0.06^PH|763-826|0.19^C2|765-864|2.1e-11^RhoGAP|920-1067|2e-50 none ["ABR:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.34Mb] 8 5 8 4.38 ONLY_REF_SPLICE YES_LDAS 0.1498 GT 1.6895 AG 1.8323 ENST00000574139.7 1-1959 ENST00000301335.10 1079-1710 chr17|-|[2]1067077-1067242[2]|[1]1069969-1070090[0]|[2]1072614-1072754[0]|[2]1073625-1073677[1]|[0]1079330-1079390[0]|[2]1083520-1083627[0]|[2]1091665-1091850[0]|[2]1100637-1100735[0]|[2]1125183-1125367[1]|[0]1228793-1229630[0]<==>chr17|-|[2]1575604-1575765[0]|[2]1576597-1576720[2]|[1]1578250-1578323[0]|[2]1583204-1583336[2]|[1]1585913-1586051[1] atgtgggacccccgcgcgttcgagcggcgctggcgggccgagttccccggggcggaggcgccggtcccgaggctggagtcggtgcgggacgcggagcgggagctggagcgccgcagactcaacctggagcggctgcaacaggtgctggcggaggagcagctcaaagcctcgctcccgcaggccgcgctggcccggggcggcggcggagactccggggagcccgggcgccccgaccccgaggccgagtctccccgcggggaccccgggcgccccgaccccgaggccgagtctccccgcggggacctgcccgccgggcccggggcggccggagaagccggcgggggaaggagctgggccgacgccgtccaccggcagctcctgcagccccagctgcggttccgggcccgggaggacgacgcgcccctcggggacccccaggcggctcccggcacggacgaggggggcgacggcggcgaccacgacttcgagatggtggatttcaacgagaagttcatcctcagccactggctggtggccccttgccggttcgggacccgcgagcgggcgcgcagcccccgccgctggatgcacctgatccccggggggcggcggccgcagcgggggacccgcgacctggagcagcgggaggccgaggccaagggccgcccgggctcgcccctcgccgcggaggagacccccgggcgcgagcacctgcccccgtggcggcgccgcaggttcctgcgggtgcccgagcgggactcgcccggccacagctcgccggagagagacagcgacggcagccggcacagctccgaccgcgaggacgacttctccgcagacttcagctacgggacggacgagtacgacggagaggggaatgaggagcagaaggggcccccggagggctcagagaccatgccgtacatcgatgagtcgcccaccatgtccccgcagctcagcgcccgcagccagggcgggggggatggcgtctccccgactccacctgagggactggctcctggggtggaagcagggaaaggcctggagatgaggaagctggttctctcggggttcttggccagcgaagagatctacattaaccagctggaagccctgttgctgcccatgaaacccctgaaggccaccgccaccacctcccagcccgtgctcaccatccagcagatcgagaccatcttctacaagatccaggacatctatgagatccacaaggagttctatgacaacctgtgccccaaggtgcaacagtgggacagccaggtcaccatgggccacctcttccagaagctggccagccagctcggtgtgtacaaagcgtttgtcgataactataaagtcgctctggagacagctgagaagtgcagccagtccaacaaccagttccagaagatctcagaggaactcaaagtgaaaggtcccaaggactccaaggacagccacacgtctgtcaccatggaagctctgctctacaagcccattgaccgggtcactcggagcaccctagtcctacacgacctgctgaagcacacacctgtggaccaccccgactacccgctgctgcaggatgccctccgcatctcccagaacttcctgtccagcatcaacgaggacatcgacccccgccggactgcagtgacaacgcccaagggggagacgcgacagctggtgaaggacggcttcctggtggaagtgtcagagagctcccggaagctgcggcacgtcttcctctttacagatgtcctactgtgtgccaagctgaagaagacctctgcagggaagcaccagcagtatgactgtaagtggtacatccccctggccgacctggtgtttccatcccccgaggagtctgaggccagcccccaggtgcaccccttcccagaccatgagctggaggacatgaagatgaagatctctgccctcaagagtgaaatccagaaggagTTGGCCTCTACACCTCCATCTTCGGCGTGCTCCAGCTGCTGTGCCTGCTGACGGCCCCCGTCATTGGCTACATCATGGACTGGAGGCTGAAGGAGTGTGAAGACGCCTCCGAGGAGCCCGAGGAGAAAGACGCCAACCAAGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAGATCCAGAAGATCACTAATGCCATGCGGGCCTTCGCCTTCACCAACCTGCTGCTCGTGGGCTTTGGGGTGACCTGCCTCATTCCCAACCTGCCTCTCCAGATCCTCTCCTTCATCCTGCACACAATCGTGCGAGGATTCATCCACTCCGCTGTCGGGGGCCTGTACGCTGCCGTGTACCCCTCCACCCAGTTCGGCAGCCTCACGGGACTGCAGTCTCTGATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCCAGGGAGACCCTCTGTGGGTGAACGTGGGGCTGCTCCTTCTCAGCCTGCTGGGCTTCTGCCTCCCGCTCTACCTGATCTGCTACCGGCGCCAGCTGGAGCGGCAGCTGCAGCAGAGGCAGGAGGATGACAAACTCTTCCTCAAAATCAACGGCTCGTCCAACCAGGAGGCCTTCGTGTAG MWDPRAFERRWRAEFPGAEAPVPRLESVRDAERELERRRLNLERLQQVLAEEQLKASLPQAALARGGGGDSGEPGRPDPEAESPRGDPGRPDPEAESPRGDLPAGPGAAGEAGGGRSWADAVHRQLLQPQLRFRAREDDAPLGDPQAAPGTDEGGDGGDHDFEMVDFNEKFILSHWLVAPCRFGTRERARSPRRWMHLIPGGRRPQRGTRDLEQREAEAKGRPGSPLAAEETPGREHLPPWRRRRFLRVPERDSPGHSSPERDSDGSRHSSDREDDFSADFSYGTDEYDGEGNEEQKGPPEGSETMPYIDESPTMSPQLSARSQGGGDGVSPTPPEGLAPGVEAGKGLEMRKLVLSGFLASEEIYINQLEALLLPMKPLKATATTSQPVLTIQQIETIFYKIQDIYEIHKEFYDNLCPKVQQWDSQVTMGHLFQKLASQLGVYKAFVDNYKVALETAEKCSQSNNQFQKISEELKVKGPKDSKDSHTSVTMEALLYKPIDRVTRSTLVLHDLLKHTPVDHPDYPLLQDALRISQNFLSSINEDIDPRRTAVTTPKGETRQLVKDGFLVEVSESSRKLRHVFLFTDVLLCAKLKKTSAGKHQQYDCKWYIPLADLVFPSPEESEASPQVHPFPDHELEDMKMKISALKSEIQKELASTPPSSACSSCCAC*RPPSLATSWTGG*RSVKTPPRSPRRKTPTKARRKRRSGTGRSRRSLMPCGPSPSPTCCSWALG*PASFPTCLSRSSPSSCTQSCEDSSTPLSGACTLPCTPPPSSAASRDCSL*SARSSPFCSSRCFWP*WVLSRETLCG*TWGCSFSACWASASRST*SATGASWSGSCSRGRRMTNSSSKSTARPTRRPSC FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Active breakpoint cluster region-related protein Atypical BCR Q12979 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31991 B3GNTL1::SERPINF1 ENSG00000175711.9::ENSG00000132386.11 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA B3GNTL1 ENSG00000175711.9 protein_coding - - chr17:82942149-83051809:- chr17:82956695:- chr17:80900025-81009685:- chr17:80914571:- SERPINF1 ENSG00000132386.11 protein_coding + + chr17:1762029-1777565:+ chr17:1766903:+ chr17:1665323-1680859:+ chr17:1670197:+ chr17:82953014 chr17:1764869 NA NA chr17:80910890 chr17:1668163 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:81.16Mb] 4 7 4 7 ONLY_REF_SPLICE YES_LDAS 0.1331 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31992 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE TRUE 1754 TRUE 3216 TRUE 1210 RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893924:+ chr17:57970407-58027935:+ chr17:57971285:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59910316,chr17:59910313 chr17:59831456,chr17:59831450 NA NA chr17:57987677,chr17:57987674 chr17:57908817,chr17:57908811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 4 38 4 13.71 ONLY_REF_SPLICE YES_LDAS 0.2144 GT 1.9086 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE FRAME_UNKNOWN Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN no_match 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|TRUE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|TRUE,FALSE|FALSE|FALSE,FALSE|TRUE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|TRUE,FALSE|TRUE|FALSE,FALSE|TRUE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 31996 DMXL2::CYP19A1 ENSG00000104093.14::ENSG00000137869.16 DAOY SRR8615962 SRR8639212 CENTRAL_NERVOUS_SYSTEM primitive_neuroectodermal_tumour-medulloblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DMXL2 ENSG00000104093.14 protein_coding - - chr15:51447711-51622833:- chr15:51453550:- chr15:51739908-51915030:- chr15:51745747:- CYP19A1 ENSG00000137869.16 protein_coding - - chr15:51208057-51338601:- chr15:51278162:- chr15:51500254-51630798:- chr15:51570359:- chr15:51452946,chr15:51452948 chr15:51304561,chr15:51304561 NA NA chr15:51745143,chr15:51745145 chr15:51596758,chr15:51596758 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CYP19A1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.11Mb] 1 13 1 8.69 ONLY_REF_SPLICE NO_LDAS 0.1173 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32002 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1758 TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120980644:- chr12:121379531-121418771:- chr12:121418447:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.36Mb] 9 8 9 2.77 ONLY_REF_SPLICE YES_LDAS 0.1342 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32004 HNF1A-AS1::POP5 ENSG00000241388.6::ENSG00000167272.11 PLCPRF5 SRR8615968 SRR8670756 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE TRUE 1759 TRUE 3236 TRUE 1218 HNF1A-AS1 ENSG00000241388.6 lncRNA - - chr12:120941728-120980968:- chr12:120970298:- chr12:121379531-121418771:- chr12:121408101:- POP5 ENSG00000167272.11 protein_coding - - chr12:120578764-120581402:- chr12:120579923:- chr12:121016567-121019205:- chr12:121017726:- chr12:120955128,chr12:120955137 chr12:120580138,chr12:120580144 NA NA chr12:121392931,chr12:121392940 chr12:121017941,chr12:121017947 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.36Mb] 8 12 8 6.82 ONLY_REF_SPLICE YES_LDAS 0.169 GT 1.8295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32006 SRSF4::OS9 ENSG00000116350.18::ENSG00000135506.17 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1761 FALSE NA FALSE NA SRSF4 ENSG00000116350.18 protein_coding - - chr1:29147743-29181900:- chr1:29181646:- chr1:29474255-29508412:- chr1:29508158:- OS9 ENSG00000135506.17 protein_coding + + chr12:57693841-57728342:+ chr12:57715760:+ chr12:58087624-58122125:+ chr12:58109543:+ chr1:29178064,chr1:29178117,chr1:29178068 chr12:57715565,chr12:57715330,chr12:57715561 NA NA chr1:29504576,chr1:29504629,chr1:29504580 chr12:58109348,chr12:58109113,chr12:58109344 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_1|4-35|5.8e-09^Sld7_N-PARTIAL|90-107~|3.2e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr12] 381 212 381 212 ONLY_REF_SPLICE YES_LDAS 6.0276 GT 1.8323 AG 1.9329 ENST00000691479.1 1-107 ENST00000700665.1 580-2007 chr1|-|[1]29181646-29181752[0]<==>chr12|+|[0]57715760-57715970[0]|[1]57716089-57716193[0]|[1]57716412-57716512[2]|[0]57716693-57716744[0]|[1]57717870-57717958[2]|[0]57718146-57718421[2]|[0]57718993-57719182[0]|[1]57720099-57720263[0]|[1]57720406-57720518[2]|[0]57720784-57720909[2] atgccgcgggtgtacatcggccgcctgagctaccaggcccgggagcgcgatgtggagcgcttctttaagggctacgggaagatcctggaggtggatctgaagaacggTTCCTCTGTGACGAGGGTGCAGGTATCTCTGGGGACTACATCGATCGCGTGGACGAGCCCTTGTCCTGCTCTTATGTGCTGACCATTCGCACTCCTCGGCTCTGCCCCCACCCTCTCCTCCGGCCCCCACCCAGTGCTGCACCGCAGGCCATCCTCTGTCACCCTTCCCTACAGCCTGAGGAGTACATGGCCTACGTTCAGAGGCAAGCCGTAGACTCAAAGCAGTATGGAGATAAAATCATAGAGGAGCTGCAAGATCTAGGCCCCCAAGTGTGGAGTGAGACCAAGTCTGGGGTGGCACCCCAAAAGATGGCAGGTGCGAGCCCGACCAAGGATGACAGTAAGGACTCAGATTTCTGGAAGATGCTTAATGAGCCAGAGGACCAGGCCCCAGGAGGGGAGGAGGTGCCGGCTGAGGAGCAGGACCCAAGCCCTGAGGCAGCAGATTCAGCTTCTGGTGCTCCCAATGATTTTCAGAACAACGTGCAGGTCAAAGTCATTCGAAGCCCTGCGGATTTGATTCGATTCATAGAGGAGCTGAAAGGTGGAACAAAAAAGGGGAAGCCAAATATAGGCCAAGAGCAGCCTGTGGATGATGCTGCAGAAGTCCCTCAGAGGGAACCAGAGAAGGAAAGGGGTGATCCAGAACGGCAGAGAGAGATGGAAGAAGAGGAGGATGAGGATGAGGATGAGGATGAAGATGAGGATGAACGGCAGTTACTGGGAGAATTTGAGAAGGAACTGGAAGGGATCCTGCTTCCGTCAGACCGAGACCGGCTCCGTTCGGAGGTGAAGGCTGGCATGGAGCGGGAACTGGAAAACATCATCCAGGAGACAGAGAAAGAGCTGGACCCAGATGGGCTGAAGAAGGAGTCAGAGCGGGATCGGGCAATGCTGGCTCTCACATCCACTCTCAACAAACTCATCAAAAGACTGGAGGAAAAACAGAGTCCAGAGCTGGTGAAGAAGCACAAGAAAAAGAGGGTTGTCCCCAAAAAGCCTCCCCCATCACCCCAACCTACAGAGGAGGATCCTGAGCACAGAGTCCGGGTCCGGGTCACCAAGCTCCGTCTCGGAGGCCCTAATCAGGATCTGACTGTCCTCGAGATGAAACGGGAAAACCCACAGCTGAAACAAATCGAGGGGCTGGTGAAGGAGCTGCTGGAGAGGGAGGGACTCACAGCTGCAGGGAAAATTGAGATCAAAATTGTCCGCCCATGGGCTGAAGGGACTGAAGAGGGTGCACGTTGGCTGACTGATGAGGACACGAGAAACCTCAAGGAGATCTTCTTCAATATCTTGGTGCCGGGAGCTGAAGAGGCCCAGAAGGAACGCCAGCGGCAGAAAGAGCTGGAGAGCAATTACCGCCGGGTGTGGGGCTCTCCAGGTGGGGAGGGCACAGGGGACCTGGACGAATTTGACTTCTGA MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGSSVTRVQVSLGTTSIAWTSPCPALMC*PFALLGSAPTLSSGPHPVLHRRPSSVTLPYSLRSTWPTFRGKP*TQSSMEIKS*RSCKI*APKCGVRPSLGWHPKRWQVRARPRMTVRTQISGRCLMSQRTRPQEGRRCRLRSRTQALRQQIQLLVLPMIFRTTCRSKSFEALRI*FDS*RS*KVEQKRGSQI*AKSSLWMMLQKSLRGNQRRKGVIQNGRERWKKRRMRMRMRMKMRMNGSYWENLRRNWKGSCFRQTETGSVRR*RLAWSGNWKTSSRRQRKSWTQMG*RRSQSGIGQCWLSHPLSTNSSKDWRKNRVQSW*RSTRKRGLSPKSLPHHPNLQRRILSTESGSGSPSSVSEALIRI*LSSR*NGKTHS*NKSRGW*RSCWRGRDSQLQGKLRSKLSAHGLKGLKRVHVG*LMRTRETSRRSSSISWCRELKRPRRNASGRKSWRAITAGCGALQVGRAQGTWTNLTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32010 SLC16A7::CCDC60 ENSG00000118596.12::ENSG00000183273.7 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1762 FALSE NA FALSE NA SLC16A7 ENSG00000118596.12 protein_coding + + chr12:59596029-59789855:+ chr12:59705018:+ chr12:59989810-60183636:+ chr12:60098799:+ CCDC60 ENSG00000183273.7 protein_coding + + chr12:119334712-119541040:+ chr12:119428683:+ chr12:119772517-119978845:+ chr12:119866488:+ chr12:59787683,chr12:59787735 chr12:119339260,chr12:119339260 NA NA chr12:60181464,chr12:60181516 chr12:119777065,chr12:119777065 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none DUF4698-PARTIAL|~91-540|2.7e-264 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:59.54Mb] 42 57 42 57 ONLY_REF_SPLICE YES_LDAS 1.0063 GT 1.9329 AG 1.7819 ENST00000549465.5 1-217 ENST00000327554.3 91-1653 chr12|+|[0]59704802-59705018[0]<==>chr12|+|[0]119428683-119428762[1]|[2]119471994-119472164[1]|[2]119479094-119479201[1]|[2]119488759-119488866[1]|[2]119500078-119500168[2]|[0]119505069-119505303[0]|[1]119516623-119516707[1]|[2]119520121-119520192[1]|[2]119522939-119523001[1]|[2]119523693-119523818[1]|[2]119528615-119528746[1]|[2]119530874-119531063[2]|[0]119540614-119540715[2] atgccaccaatgccaagtgccccacctgtgcatccacctccagatggaggatggggttggattgtggttggagcagcttttatctccattggattttcctatgcattccccaaagctgtcaccgtattcttcaaagaaattcagcaaatattccacactacctacagtgaaatagcatggatttcatccattatgctggctgttatgtacgcaggagGTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAATAAACCTCAAAAAGGACCTTATACGAAGCCGCTTTTTGATCCAGTCTGTGAAGATAGGCCGTGGATATTTTGCTATTCTGAGGGAAGAGACTGCAAAGAAAAAGAAGCAACAACAACTTCAGAAACTGAAAGAGGAGGAAAGAAATAAATTCCAGCCAGCCGAAAAGATCTCAGAAATCCACTATGGGGACACCTTATTGAGCACATATGATGATGAGAAGTTGAAGACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCCCATCCACAGCTGCATCATTTCTCCCTCGCTAACCGAGGCTCACGTCGAGCCCCTCTTCCGCCAGCTCTGTGCTCTCCACTGGCTTCTGGAGGCCCTGACTATTGACCACACCCACCACACCATGAAGCCTGTGATCACCTGCTGGAACCCAAAGGACCCGGGTGGAAGCAAGAGCACCATTAAAAAAATCAATAAGGACAAGTCCATGGGACAGAAATGGGAGCATTTCATCACAGCGCCAAAGACCAAGAAATTCAAAATTCCCACAATGCGAGTCACCAACCGCAAACCAAGCCGGCGAGGCTCCACACTCAGTCTGAGTCGGGCCAGTGGGGGGTCCTCTCCCCAGAGCAGCATGATCTCTGTGAACCCTGGCTCGGATGAGCCCCCAAGTGTGAACACCCAGGTGACCAGCAGCAAGGACATTGAGGACAATGAGTCATCTTCAACCAAGCCAGATGAAGAACCTCTGTATATGAATCTGCAGAAGCTCCTGGAGATGGTTCGGGAAGATGCCCGGAGGACAGTCACAATAGAAAATGGGATGCAAAGAAAAGCACCCAGCATCTTGTCAGTGCTGAAACAAAACAAGAGTAATTCTGCTTATAAGGAAATGCAGACCACTCTCAAATCAAGTGAGAGATCCAGCAGTACAAGTGCAGAAAGCCACATCCAACCAGTCCAGAAGAAGTCTAAAAACCGCACTAATTGTGACATCAACATCCACTACAAGAGTGGGGTGTGTAACACCATGAGGGCCAAGTTTTACAGCGTAGCCCAGGAGGCTGGCTTCTGCCTGCAGGACAAGATGGAAATCCTCATGAAGCGCCAAGAAGAGAGAGGTATCCAGAAGTTCCGTGCTTTTGTCCTTGTCTCAAATTTTCAAAAGGACATAGCAAAAATGAGACATCACATATCTGTAGTAAAAGGAGATGCAGAAGAAATTGCAGACCACTGGTACTTTGATCTGTTGTCCAAACTGCCAGAGGATCTAAAGAACTTCCGCCCCGCCAAAAAGATCCTGGTGAAACTGCAGAAGTTTGGAGAAAACCTGGACTTGCGGATTCGACCCCATGTCCTCCTGAAGGTGCTGCAGGATCTGAGGATTTGGGAACTGTGCTCCCCTGACATCGCTGTGGCTATTGAGTTTGTGCGAGAACACATCATCCATATGCCTCAAGAGGATTACATCAGCTGGCTGCAGAGCCGGATCAACATACCCATTGGGCCCTACAGCGCCCTGAGGTAG MPPMPSAPPVHPPPDGGWGWIVVGAAFISIGFSYAFPKAVTVFFKEIQQIFHTTYSEIAWISSIMLAVMYAGGPRQANEEHQVYGQGNNKPQKGPYTKPLFDPVCEDRPWIFCYSEGRDCKEKEATTTSETERGGKK*IPASRKDLRNPLWGHLIEHI***EVEDTGS*SHTSPIHSHPQLHHFSLANRGSRRAPLPPALCSPLASGGPDY*PHPPHHEACDHLLEPKGPGWKQEHH*KNQ*GQVHGTEMGAFHHSAKDQEIQNSHNASHQPQTKPARLHTQSESGQWGVLSPEQHDLCEPWLG*APKCEHPGDQQQGH*GQ*VIFNQAR*RTSVYESAEAPGDGSGRCPEDSHNRKWDAKKSTQHLVSAETKQE*FCL*GNADHSQIK*EIQQYKCRKPHPTSPEEV*KPH*L*HQHPLQEWGV*HHEGQVLQRSPGGWLLPAGQDGNPHEAPRRERYPEVPCFCPCLKFSKGHSKNETSHICSKRRCRRNCRPLVL*SVVQTARGSKELPPRQKDPGETAEVWRKPGLADSTPCPPEGAAGSEDLGTVLP*HRCGY*VCARTHHPYASRGLHQLAAEPDQHTHWALQRPEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32015 PRH1::STYK1 ENSG00000231887.9::ENSG00000060140.9 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1764 FALSE NA FALSE NA PRH1 ENSG00000231887.9 protein_coding - - chr12:10824960-11171608:- chr12:11171422:- chr12:10977559-11324207:- chr12:11324021:- STYK1 ENSG00000060140.9 protein_coding - - chr12:10618923-10674318:- chr12:10620348:- chr12:10771522-10826917:- chr12:10772947:- chr12:11130820,chr12:11130820,chr12:11130822 chr12:10621742,chr12:10621740,chr12:10621741 NA NA chr12:11283419,chr12:11283419,chr12:11283421 chr12:10774341,chr12:10774339,chr12:10774340 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr12:0.15Mb] 21 28 21 28 ONLY_REF_SPLICE YES_LDAS 0.4981 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Tyrosine-protein kinase STYK1 TK TK-Unique Q6J9G0 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32027 LINC01814::ENSG00000231083 ENSG00000236008.5::ENSG00000231083.1 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary star-fusion TRUE TRUE TRUE 1769 FALSE NA FALSE NA LINC01814 ENSG00000236008.5 lncRNA - - chr2:8461703-8592903:- chr2:8576911:- chr2:8601833-8733033:- chr2:8717041:- ENSG00000231083 ENSG00000231083.1 lncRNA - - chr2:8600892-8622942:- chr2:8607801:- chr2:8741022-8763072:- chr2:8747931:- chr2:8559375,chr2:8559379 chr2:8621103,chr2:8621104 NA NA chr2:8699505,chr2:8699509 chr2:8761233,chr2:8761234 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 8 7 4.67 ONLY_REF_SPLICE YES_LDAS 0.1187 GT 1.5329 AG 1.1589 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32029 SLC6A6::ENSG00000255028 ENSG00000131389.18::ENSG00000255028.5 QGP1 SRR8615971 SRR8788983 PANCREAS carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC6A6 ENSG00000131389.18 protein_coding + + chr3:14402576-14489349:+ chr3:14416453:+ chr3:14444076-14530857:+ chr3:14457961:+ ENSG00000255028 ENSG00000255028.5 lncRNA - - chr11:109355085-109583907:- chr11:109416171:- chr11:109225812-109454633:- chr11:109286897:- chr3:14423433,chr3:14423432 chr11:109476567,chr11:109476568 NA NA chr3:14464941,chr3:14464940 chr11:109347293,chr11:109347294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 12 6 11.89 ONLY_REF_SPLICE YES_LDAS 0.1819 GT 1.8256 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32033 DPH1::CCDC42 ENSG00000108963.19::ENSG00000161973.11 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1771 FALSE NA FALSE NA DPH1 ENSG00000108963.19 protein_coding + + chr17:2030137-2043898:+ chr17:2030230:+ chr17:1933431-1947192:+ chr17:1933524:+ CCDC42 ENSG00000161973.11 protein_coding - - chr17:8729935-8745219:- chr17:8735254:- chr17:8633253-8648537:- chr17:8638572:- chr17:2031436 chr17:8738611 NA NA chr17:1934730 chr17:8641929 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DPH1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:6.69Mb] 440 1 440 1 ONLY_REF_SPLICE YES_LDAS 2.3435 GT 1.7819 AG 1.8892 ENST00000674200.2 1-76 ENST00000293845.8 715-951 chr17|+|[0]2030155-2030230[0]<==>chr17|-|[2]8730130-8730207[0]|[2]8735096-8735254[0] atgcgcaggcaggtgatggcggcgctggtcgtatccggggcagcggagcagggcggccgagacggccctggcagagGAATCTCGCTGGGCGCACATCCAGAACACCGCAGCCAAGAAGACCCTCCTGCTTGGCACCATTAAGATGGCCACGCTGAACCTCTTCCAGATCGTGAGCAAGCACCTGAAGGAGGTGACTGAGGTGGCACTGGAGGACACCCACAAGCAGCTGGACATGATCCAGCAATTTATCCAAGACCGGTCGGACATCTGGGCAGAGGTGAAAAAGAAGGAACAACAGCGAGTCCGGATTTAA MRRQVMAALVVSGAAEQGGRDGPGRGISLGAHPEHRSQEDPPAWHH*DGHAEPLPDREQAPEGGD*GGTGGHPQAAGHDPAIYPRPVGHLGRGEKEGTTASPDL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32035 PELP1::RAP1GAP2 ENSG00000141456.16::ENSG00000132359.17 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1773 FALSE NA FALSE NA PELP1 ENSG00000141456.16 protein_coding - - chr17:4669774-4704337:- chr17:4674809:- chr17:4573069-4607632:- chr17:4578104:- RAP1GAP2 ENSG00000132359.17 protein_coding + + chr17:2755705-3037741:+ chr17:3018061:+ chr17:2658999-2941035:+ chr17:2921355:+ chr17:4674688,chr17:4674688,chr17:4674690,chr17:4674696 chr17:3015788,chr17:3015787,chr17:3015785,chr17:3015785 NA NA chr17:4577983,chr17:4577983,chr17:4577985,chr17:4577991 chr17:2919082,chr17:2919081,chr17:2919079,chr17:2919079 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RIX1|114-276|4.3e-29^PELP1_HEAT|429-440|0.27^PELP1_HEAT|473-537|1e-30^PELP1_HEAT|619-689|3.3e-22 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.63Mb] 83 58 83 58 ONLY_REF_SPLICE YES_LDAS 0.7493 GT 1.9899 AG 1.9086 ENST00000301396.8 1-1572 ENST00000697391.1 1522-2220 chr17|-|[2]4674809-4674956[2]|[1]4675079-4675195[2]|[1]4675274-4675362[0]|[2]4675797-4675884[2]|[1]4676036-4676162[1]|[0]4676357-4676507[0]|[2]4676753-4676812[0]|[2]4682502-4682573[0]|[2]4682803-4682952[0]|[2]4690888-4690993[2]|[1]4691378-4691442[0]|[2]4703863-4704261[0]<==>chr17|+|[0]3018061-3018198[2]|[0]3020477-3020595[1]|[2]3026008-3026121[1]|[2]3026350-3026464[2]|[0]3026944-3027070[0]|[1]3030922-3030998[2]|[0]3032411-3032419[2] atgctccttcccagcttgagcccgcgagtccagcctgccttcactcagtgcgcaagaccgcagccccctccccacgccccctccccagtaggcggccgtcgcggtgtgtttgcgtcatcgcgccacgccaccactggaacccgggggaagatggcggcagccgttctgagtgggccctctgcgggctccgcggctggggttcctggcgggaccgggggtctctcggcagtgagctcgggcccgcggctccgcctgctgctgctggagagtgtttctggtttgctgcaacctcgaacggggtctgccgttgctccggtgcatcccccaaaccgctcggccccacatttgcccgggctcatgtgcctattgcggctgcatgggtcggtgggcggggcccagaacctttcagctcttggggcattggtgagtctcagtaatgcacgtctcagttccatcaaaactcggtttgagggcctgtgtctgctgtccctgctggtaggggagagccccacagagctattccagcagcactgtgtgtcttggcttcggagcattcagcaggtgttacagacccaggacccgcctgccacaatggagctggccgtggctgtcctgagggacctcctccgatatgcagcccagctgcctgcactgttccgggacatctccatgaaccacctccctggccttctcacctccctgctgggcctcaggccagagtgtgagcagtcagcattggaaggaatgaaggcttgtatgacctatttccctcgggcttgtggttctctcaaaggcaagctggcctcattttttctgtctagggtggatgccttgagccctcagctccaacagttggcctgtgagtgttattcccggctgccctctttaggggctggcttttcccaaggcctgaagcacaccgagagctgggagcaggagctacacagtctgctggcctcactgcacaccctgctgggggccctgtacgagggagcagagactgctcctgtgcagaatgaaggccctggggtggagatgctgctgtcctcagaagatggtgatgcccatgtccttctccagcttcggcagaggttttcgggactggcccgctgcctagggctcatgctcagctctgagtttggagctcccgtgtccgtccctgtgcaggaaatcctggatttcatctgccggaccctcagcgtcagtagcaagaatattagcttgcatggagatggtcccctgcggctgctgctgctgccctctatccaccttgaggccttggacctgctgtctgcactcatcctcgcgtgtggaagccggctcttgcgctttgggatcctgatcggccgcctgcttccccaggtcctcaattcctggagcatcggtagagattccctctctccaggccaggagaggccttacagcacggttcggaccaaggtgtatgcgatattagagctgtgggtgcaggtttgtggggcctcggcgggaatgcttcagggaggagcctctggagaggccctgctcacccacctgctcagcgacatctccccgccagctgatgcccttaagAGGGCCATCCGCGTACGCAGCCACTCCATGGAGACCATGGTGGGCGGCCAGAAGAAGTCGCACAGTGGGGGCATCCCTGGCAGCCTCAGCGGGGGCATCTCCCACAACAGCATGGAGGTCACCAAGACCACCTTCTCGCCTCCAGTGGTGGCGGCAACGGTGAAGAACCAGTCACGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCCCGCCTGCACACGGGCTCAGAAGGCCAGGGCGACAGCCGGGCACGATGTGACAGCACATCCAGCACACCCAAGACCCCAGATGGTGGACACTCCTCTCAGGAGATAAAGTCTGAGACCTCATCCAATCCCAGCTCTCCGGAAATCTGCCCCAACAAGGAGAAGCCCTTCATGAAGTTGAAGGAAAACGGCCGTGCCATCTCCCGCTCCTCCTCCAGCACCAGCAGCGTCAGCAGCACTGCAGGGGAGGGCGAGGCCATGGAGGAGGGCGACAGTGGGGGCAGCCAGCCGTCCACGACCTCACCCTTCAAGCAGGAGGTGTTTGTCTACAGCCCGTCCCCGAGCAGCGAGAGCCCCAGCCTGGGGGCAGCTGCCACCCCGATCATCATGAGCCGGAGTCCCACAGATGCCAAAAGCAGAAACTCCCCGAGATCGAACCTGAAATTCCGCTTTGACAAGCTCAGCCATGCCAGCTCTGGTGCGGGTCACTAA MLLPSLSPRVQPAFTQCARPQPPPHAPSPVGGRRGVFASSRHATTGTRGKMAAAVLSGPSAGSAAGVPGGTGGLSAVSSGPRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLMCLLRLHGSVGGAQNLSALGALVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQTQDPPATMELAVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRACGSLKGKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYEGAETAPVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLSVSSKNISLHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVAATVKNQSRSPIKRRSGLFPRLHTGSEGQGDSRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFMKLKENGRAISRSSSSTSSVSSTAGEGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFDKLSHASSGAGH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32036 SPTBN1::NHERF2 ENSG00000115306.16::ENSG00000065054.14 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1772 FALSE NA FALSE NA SPTBN1 ENSG00000115306.16 protein_coding + + chr2:54456317-54671446:+ chr2:54526566:+ chr2:54683454-54898583:+ chr2:54753703:+ NHERF2 ENSG00000065054.14 protein_coding + + chr16:2025356-2039026:+ chr16:2036728:+ chr16:2075357-2089027:+ chr16:2086729:+ chr2:54540639,chr2:54540638 chr16:2036636,chr16:2036632 NA NA chr2:54767776,chr2:54767775 chr16:2086637,chr16:2086633 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Spectrin|8-26|0.3^CH-PARTIAL|55-148~|4.3e-25^CH_2|61-96|0.23^CAMSAP_CH|71-97|0.014 none none 83 79 83 78.25 ONLY_REF_SPLICE YES_LDAS 0.8569 GT 1.9656 AG 1.8323 ENST00000356805.9 1-148 ENST00000424542.7 595-1014 chr2|+|[0]54526419-54526566[0]<==>chr16|+|[0]2036728-2036881[0]|[1]2036955-2036998[2]|[0]2037538-2037600[2]|[0]2037826-2037984[2] atgacgaccacagtagccacagactatgacaacattgagatccagcagcagtacagtgatgtcaacaaccgctgggatgtcgacgactgggacaatgagaacagctctgcgcggctttttgagcggtcccgcatcaaggctctggcagGTGAACGGGCAGAATGTGGAGGGACTGCGCCATGCTGAGGTGGTGGCCAGCATCAAGGCACGGGAGGACGAGGCCCGGCTGCTGGTCGTGGACCCCGAGACAGATGAACACTTCAAGCGGCTTCGGGTCACACCCACCGAGGAGCACGTGGAAGGTCCTCTGCCGTCACCCGTCACCAATGGAACCAGCCCTGCCCAGCTCAATGGTGGCTCTGCGTGCTCGTCCCGAAGTGACCTGCCTGGTTCCGACAAGGACACTGAGGATGGCAGTGCCTGGAAGCAAGATCCCTTCCAGGAGAGCGGCCTCCACCTGAGCCCCACGGCGGCCGAGGCCAAGGAGAAGGCTCGAGCCATGCGAGTCAACAAGCGCGCGCCACAGATGGACTGGAACAGGAAGCGTGAAATCTTCAGCAACTTCTGA MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALAGERAECGGTAPC*GGGQHQGTGGRGPAAGRGPRDR*TLQAASGHTHRGARGRSSAVTRHQWNQPCPAQWWLCVLVPK*PAWFRQGH*GWQCLEARSLPGERPPPEPHGGRGQGEGSSHASQQARATDGLEQEA*NLQQLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32037 NAA38::VPS53 ENSG00000183011.14::ENSG00000141252.21 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1775 FALSE NA FALSE NA NAA38 ENSG00000183011.14 protein_coding - - chr17:7856685-7885238:- chr17:7883235:- chr17:7760003-7788556:- chr17:7786553:- VPS53 ENSG00000141252.21 protein_coding - - chr17:508503-721717:- chr17:661895:- chr17:411743-624957:- chr17:565135:- chr17:7869715,chr17:7869715,chr17:7869717,chr17:7869718 chr17:666284,chr17:666279,chr17:666283,chr17:666283 NA NA chr17:7773033,chr17:7773033,chr17:7773035,chr17:7773036 chr17:569524,chr17:569519,chr17:569523,chr17:569523 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr17:7.13Mb] 60 42 60 42 ONLY_REF_SPLICE YES_LDAS 0.542 GT 1.5329 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32039 CRK::YWHAE ENSG00000167193.8::ENSG00000108953.17 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1774 FALSE NA FALSE NA CRK ENSG00000167193.8 protein_coding - - chr17:1420689-1463162:- chr17:1462953:- chr17:1323983-1366456:- chr17:1366247:- YWHAE ENSG00000108953.17 protein_coding - - chr17:1344275-1400222:- chr17:1354347:- chr17:1247569-1303516:- chr17:1257641:- chr17:1461864,chr17:1462091,chr17:1461869 chr17:1354823,chr17:1354698,chr17:1354825 NA NA chr17:1365158,chr17:1365385,chr17:1365163 chr17:1258117,chr17:1257992,chr17:1258119 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CRK:Oncogene"];["YWHAE:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.02Mb];NEIGHBORS[20311] 49 36 49 36 ONLY_REF_SPLICE YES_LDAS 0.4517 GT 1.9656 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide (14-3-3 epsilon) 1 endometrial stromal sarcoma mesenchymal TSG, fusion translocation 32043 SMG6::MYO15A ENSG00000070366.14::ENSG00000091536.20 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1778 TRUE 3279 TRUE 1235 SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2188399:- chr17:1963133-2207079:- chr17:2091693:- MYO15A ENSG00000091536.20 protein_coding + + chr17:18108756-18179802:+ chr17:18124483:+ chr17:18012070-18083116:+ chr17:18027797:+ chr17:2188028 chr17:18116816 NA NA chr17:2091322 chr17:18020130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PIN_4|152-178|3.2^EST1|578-628|0.23^EST1|638-742|1.8e-16^EST1_DNA_bind|751-1104|3.4e-59^PIN_4|1248-1408|4.5e-26^PIN_9|1256-1331|1.5e-05^PIN_9|1386-1406|0.24 none ["SMG6:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:15.80Mb] 21 11 21 5.92 ONLY_REF_SPLICE YES_LDAS 0.1431 GT 1.8256 AG 1.8295 ENST00000263073.11 1-2986 ENST00000647165.2 3610-10593 chr17|-|[0]2188399-2188515[1]|[0]2236492-2236637[2]|[1]2244658-2244719[0]|[2]2282647-2282859[0]|[2]2283625-2283735[0]|[2]2292552-2292630[2]|[1]2292871-2292977[0]|[2]2297243-2297353[0]|[2]2297863-2298055[2]|[1]2298906-2300664[1]|[0]2303633-2303720[0]<==>chr17|+|[0]18124483-18124565[1]|[2]18125168-18125231[2]|[0]18126347-18126456[1]|[2]18126791-18126865[1]|[2]18127075-18127165[2]|[0]18130805-18130810[2]|[0]18131239-18131342[1]|[2]18131468-18131531[2]|[0]18132453-18132566[2]|[0]18133225-18133386[2]|[0]18135711-18135824[2]|[0]18136417-18136475[1]|[2]18136563-18136686[2]|[0]18137584-18137679[2]|[0]18138115-18138246[2]|[0]18138811-18138936[2]|[0]18139534-18139611[2]|[0]18140517-18140665[1]|[2]18140787-18140832[2]|[0]18141019-18141143[1]|[2]18141653-18141770[2]|[0]18142079-18142254[1]|[2]18142756-18142840[2]|[0]18143566-18143619[2]|[0]18143715-18143796[0]|[1]18143870-18144000[2]|[0]18144497-18144592[2]|[0]18145872-18146107[1]|[2]18148029-18148210[0]|[1]18148496-18148568[1]|[2]18148761-18148952[1]|[2]18149216-18149376[0]|[1]18149486-18149580[2]|[0]18150429-18150543[0]|[1]18150698-18150765[2]|[0]18150836-18150913[2]|[0]18151110-18151290[0]|[1]18151395-18151527[1]|[2]18151846-18151951[2]|[0]18152112-18152184[0]|[1]18153775-18153896[2]|[0]18154131-18154190[2]|[0]18154680-18154755[0]|[1]18155110-18155225[2]|[0]18155314-18155432[1]|[2]18156195-18156336[2]|[0]18156954-18157065[0]|[1]18157156-18157230[0]|[1]18157722-18157900[2]|[0]18158523-18158638[1]|[2]18158925-18158997[2]|[0]18159275-18159347[0]|[1]18159606-18159679[2]|[0]18159935-18160017[1]|[2]18161317-18161447[0]|[1]18162585-18162679[2]|[0]18163244-18163321[2]|[0]18163742-18163838[0]|[1]18166361-18166521[2]|[0]18167590-18167723[1]|[2]18171638-18171771[0]|[1]18172157-18172290[2]|[0]18173781-18173921[2]|[0]18178769-18178870[2] atggcggaagggctggagcgtgtgcggatctccgcgtcggagctgcgcgggatcctggctactctggccccgcaggccgggagcagagaaaacatgaaggaattaaaggaggccaggccgcgcaaagataacaggcgtccagatctggaaatctataagcctggcctttctcggctaaggaacaagcccaaaatcaaggaaccccctgggagtgaggaattcaaagatgaaattgttaatgaccgagattgctctgctgttgaaaatggtacacagcccgttaaagatgtctgcaaggaactgaacaaccaagagcagaatggtcctatagacccagaaaataatcggggacaagaatcctttcctaggactgctggacaagaggatcgtagtctaaaaattatcaaaagaacaaagaaacccgacctgcagatctatcagcctggacgacgtttgcagactgttagcaaagaatccgccagtcgggtggaggaggaagaagtcctcaaccaggtagaacaactgagagtagaggaagatgagtgtaggggaaatgttgcgaaggaggaagttgcgaataaaccagacagggctgagatagaaaagagcccaggtggtgggagagtaggggctgcaaaaggagaaaaaggaaagaggatgggaaaaggggagggggtgagggaaacccacgacgacccagcccgcgggaggccgggctccgcaaagcgctactcccgctcagacaaacgaaggaatcgctaccgcacgcgcagcaccagctcagctggcagcaacaacagcgctgagggagctggcctgacggataatggatgtcgccgccgccgacaggataggaccaaggagaggccacgactgaagaagcaagtgtctgtgtcctcaaccgattccttagacgaggacagaattgatgagcctgatggattaggacccaggagaagttcagaaaggaagagacatttagaaagaaactggtctggccgtggggagggtgagcagaaaaacagtgctaaagaatatcgaggcactcttcgtgtcactttcgatgcagaagccatgaacaaagagtctcccatggtgaggtcagccagggatgatatggatagaggaaagcctgacaaaggcttgagcagtgggggcaaaggctctgagaagcaggagtccaaaaacccgaaacaagaacttcggggtcgtggtcgtggcattctgattttgcctgcccataccaccctatctgtcaattcagcaggttctccagagtccgcgcctttgggacctcggcttttgtttggatctggtagtaagggatctcggagttggggccgtggaggcaccacacgccgattgtgggacccaaacaatcctgatcagaaacctgctctaaagactcagacgccccagctacatttcttggacactgatgatgaagtcagccctacatcttggggtgactcacgccaggctcaggcatcttactataagtttcaaaactctgacaacccctattattacccccggacaccaggccctgcctcccagtatccctatacgggctataaccctctacagtacccagtgggccctacgaatggtgtgtacccagggccttactacccaggctacccgactccgtcaggacagtatgtgtgtagccctctacctaccagcaccatgagtcccgaggaggtagagcagcacatgaggaacctgcagcaacaggagctgcacaggcttctccgggtggctgacaaccaggaactgcagctcagcaacctgctctccagggaccgcatcagtccggagggcctggagaagatggcgcaactcagagctgaactgctgcagctatatgagcgctgtattctattagatattgagttctctgataatcagaatgtggatcagatcctgtggaagaatgctttctatcaggtgattgagaagttcaggcaacttgtcaaggatccgaatgttgagaacccagaacagattcggaacagacttttggagctcttggatgagggtagtgacttctttgatagtttgcttcagaagctgcaggttacttacaagttcaaactggaagactacatggatggtcttgccattcgcagcaagccattacgcaagacagtaaaatatgccttgatcagtgcccagcgatgcatgatatgccaaggagatattgctaggtaccgggagcaagccagtgatacagcgaattatgggaaagcacgcagttggtacctgaaggcccagcacattgctcccaagaatgggcgcccctataaccagttggctttgctggcagtgtatacgaggaggaagcttgacgctgtctattactatatgcgcagtttagctgccagcaaccctatcctgactgccaaggagagtctcatgagcttgtttgaagagaccaagcggaaggcagaacagatggaaaagaagcaacatgaggaatttgacctgagccctgaccagtggcggaaaggaaagaagtctactttccggcatgttggagatgacaccactcgcctggagatctggattcatccatcccatccacggtcttcccagggcactgagtctgggaaggattctgagcaagagaatgggctgggcagcctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatgggaagctgtttacccggattgggatggagacattccctgcagtggctgagaaggtcctcaaggagttccaggtgttactgcagcacagcccctctcccattggaagtacccgcatgctgcagcttatgaccatcaatatgtttgcagtacacaactcccagctgaaagactgcttctcggaggagtgccgctctgtgatccaggaacaagccgcagctctgggcttggccatgttttctctactggtccgccgctgcacctgcttacttaaggagtccgccaaagATGCACTCCATCCGCAACCTGCCATCCATGCGGTTCCGTGAGCAGCACGGGGAGGATGGTGTGGAGGACATGACACAGCTGGAAGACCTCCAGGAAACCACTGTGCTGTCCAACCTCAAGATTAGATTTGAACGGAACCTCATCTACACATACATTGGGAGCATCCTGGTGTCGGTGAACCCATACCAAATGTTTGGAATCTATGGGCCGGAGCAGGTGCAGCAGTACAACGGACGGGCCCTGGGAGAGAATCCCCCGCACCTCTTTGCTGTTGCAAATCTCGCCTTCGCCAAAATGCTCGATGCCAAACAGAACCAGTGCATAATCATTAGTGGAGAGAGCGGCTCTGGCAAAACTGAGGCCACCAAGCTGATTCTGCGCTACCTGGCCGCCATGAACCAGAAACGGGAGGTCATGCAGCAGATAAAGATCCTGGAGGCAACACCCCTCTTGGAGTCCTTCGGTAATGCCAAAACCGTCAGGAACGACAACTCCAGCCGCTTTGGGAAGTTTGTGGAAATCTTTCTGGAAGGGGGCGTGATCTCTGGTGCCATAACCTCCCAGTACCTGCTTGAGAAATCCAGGATCGTGTTTCAGGCCAAAAACGAGAGGAATTACCACATCTTCTACGAGTTGCTGGCCGGGTTGCCTGCCCAGCTCAGGCAGGCCTTTAGCCTGCAAGAGGCTGAGACCTACTACTATCTGAACCAGGGTGGGAACTGTGAGATAGCAGGAAAGAGCGATGCAGATGACTTTCGCCGGCTCCTGGCTGCCATGGAGGTGTTGGGCTTCAGCAGTGAGGACCAGGACAGCATCTTCCGCATCCTGGCCTCCATCCTGCACCTGGGCAACGTCTACTTTGAGAAGTATGAGACGGATGCACAGGAGGTGGCCTCAGTGGTGAGTGCCCGAGAGATCCAGGCCGTGGCAGAGCTGCTGCAGATCTCCCCTGAGGGCCTGCAGAAGGCCATCACCTTCAAAGTGACCGAGACAATGCGAGAGAAGATCTTCACGCCCCTAACTGTGGAGAGCGCTGTGGATGCCAGGGACGCCATCGCCAAGGTCTTGTATGCACTGCTGTTCAGCTGGCTCATCACCAGGGTCAACGCGCTGGTGTCCCCAAGGCAGGACACACTGTCCATCGCCATCCTGGACATCTATGGTTTCGAGGACCTGAGCTTCAACAGCTTTGAGCAGCTGTGTATTAACTACGCAAACGAGAACCTTCAGTACCTTTTCAACAAGATCGTCTTCCAGGAGGAGCAGGAGGAGTACATCCGTGAGCAGATAGACTGGCAGGAGATCACCTTTGCTGACAACCAGCCCTGCATCAACCTCATCTCACTGAAGCCTTATGGCATCCTGCGGATCCTTGACGACCAGTGTTGCTTTCCCCAGGCTACAGACCACACCTTCCTACAGAAGTGCCACTACCATCATGGCGCCAACCCGCTCTATTCCAAACCCAAGATGCCGCTGCCTGAGTTCACCATCAAGCACTATGCAGGCAAGGTCACCTACCAGGTGCACAAGTTCCTGGACAAGAACCACGACCAAGTGCGCCAGGATGTGCTGGACCTGTTCGTACGGAGCCGGACACGGGTGGTGGCACACCTCTTCTCCAGCCATGCCCCACAGGCTGCCCCTCAGCGCCTGGGCAAGAGCAGCTCCGTCACTCGGCTCTACAAGGCGCACACTGTGGCCGCCAAGTTCCAGCAGTCACTCCTGGATCTGGTGGAAAAGATGGAGAGGTGCAACCCCTTGTTCATGCGTTGCCTGAAGCCCAACCACAAGAAGGAGCCAGGTCTCTTTGAGCCAGATGTGGTAATGGCACAATTACGCTATTCAGGGGTGCTGGAGACCGTGAGGATCCGCAAGGAGGGATTTCCAGTGCGCCTGCCTTTCCAGGGGTTCATCGACAGGTACTGCTGTCTAGTGGCCCTCAAGCATGACCTGCCGGCTAATGGGGACATGTGTGTGTCAGTGCTGAGTCGCCTGTGCAAAGTCATGCCAAACATGTACCGTGTTGGGGTCAGCAAGCTGTTCCTTAAGGAACACCTATACCAGCTGCTGGAGAGTATGCGAGAGCATGTCCTGAATCTGGCAGCCCTCACTCTGCAGCGCTGCCTCCGTGGCTTCTTCATTAAGCGGCGATTCCGCTCTCTGCGCCACAAGATCATCCTGCTGCAAAGCCGGGCCCGTGGCTACCTTGCCAGGCAACGCTATCAGCAGATGAGGAGGAGTCTGGTGAAGTTCCGGTCCCTGGTACACGCATACGTGAGCCGCCGACGCTATCTCAAGCTGAGGGCAGAGTGGAGGTGCCAGGTGGAGGGGGCGCTGCTGTGGGAGCAGGAGGAGCTGAGCAAGCGGGAGGTAGTCGCTGTGGGGCACCTGGAGGTACCGGCTGAGCTGGCTGGGCTCTTGCAAGCAGTGGCAGGCCTCGGGCTGGCCCAGGTGCCTCAGGTGGCCCCTGTGAGGACTCCTCGACTCCAGGCTGAGCCCCGTGTCACACTGCCCCTGGACATCAACAACTATCCTATGGCCAAGTTTGTCCAGTGCCACTTCAAGGAACCTGCCTTTGGGATGCTGACAGTGCCCCTGAGGACACCCCTCACGCAGCTGCCAGCCGAGCACCATGCAGAAGCCGTGAGCATCTTCAAGCTGATCCTGCGCTTCATGGGCGACCCCCACCTGCATGGTGCCCGGGAGAACATCTTCGGGAACTACATCGTGCAGAAGGGGCTGGCGGTGCCTGAGCTGCGGGATGAGATCCTGGCACAGCTGGCCAATCAGGTGTGGCACAATCACAATGCCCACAATGCTGAGCGGGGCTGGCTGCTGCTGGCCGCCTGCCTCAGTGGCTTTGCACCTTCCCCGTGCTTCAACAAGTACCTTCTCAAGTTTGTGTCTGATTATGGGCGGAATGGCTTCCAGGCTGTGTGTCAGCACCGCCTCATGCAGGCCATGGGCCGGGCCCAACAGCAGGGCTCGGGGGCTGCCCGCACCTTACCCCCGACCCAGCTCGAGTGGACAGCGACCTATGAGAAGGCCAGCATGGCGCTGGACGTGGGCTGCTTCAATGGTGACCAGTTCTCCTGCCCGGTGCACTCCTGGAGTACGGGGGAAGAGGTGGCTGGAGACATTCTGAGGCACAGGGGGCTGGCAGATGGCTGGCGCGGCTGGACCGTGGCCATGAAGAATGGTGTCCAGTGGGCAGAGCTGGCTGGCCACGACTACGTGTTAGACCTGGTGTCGGACCTGGAGCTGCTCAGGGACTTCCCTCGACAGAAGTCCTACTTCATTGTGGGCACAGAGGGGCCTGCAGCCAGCAGGGGAGGCCCCAAAGTGGTGTTTGGGAACAGCTGGGACTCGGATGAGGACATGTCCACTAGACCCCAGCCCCAGGAGCACATGCCCAAAGTACTTGACTCTGATGGGTACAGCAGCCACAATCAGGACGGTACAAATGGGGAGACTGAGGCCCAAAGAGGGACAGCAACCCACCAAGAGTCAGACAGTCTTGGAGAGCCTGCTGTGCCCCACAAGGGGCTGGACTGCTACCTGGATAGCCTCTTTGACCCTGTGCTGTCCTACGGGGATGCGGACCTGGAGAAGCCAACAGCCATTGCCTACCGCATGAAAGGGGGAGGCCAGCCCGGTGGAGGCAGCAGTAGTGGTACTGAAGACACCCCCAGGAGACCCCCAGAGCCAAAGCCAATCCCAGGCCTGGATGCCTCCACATTGGCTCTGCAGCAAGCCTTCATCCACAAACAGGCCGTGCTGCTGGCCCGGGAGATGACCCTGCAGGCCACGGCACTCCAGCAGCAGCCCCTGAGTGCTGCCCTGAGATCCTTGCCCGCAGAGAAACCCCCAGCACCAGAGGCACAGCCGACGTCTGTAGGCACCGGTCCCCCTGCCAAACCCGTGCTCCTGCGTGCCACTCCAAAGCCCTTGGCCCCAGCCCCTCTGGCCAAGGCTCCAAGGCTCCCCATCAAGCCTGTGGCTGCCCCTGTTCTAGCTCAGGATCAGGCTTCTCCAGAAACCACTTCACCCTCCCCAGAGCTGGTCCGGTACTCTACGCTCAACTCTGAGCACTTCCCACAGCCCACACAGCAGATCAAGAATATTGTCAGGCAGTACCAGCAGCCGTTCCGGGGAGGCCGGCCTGAGGCCCTCAGGAAGGATGGCGGGAAAGTGTTCATGAAGCGGCCAGACCCTCATGAGGAGGCCCTGATGATCCTGAAAGGGCAGATGACCCACCTGGCAGCTGCACCTGGCACCCAGGTGTCCAGAGAGGCCGTGGCCCTGGTGAAGCCGGTGACCAGTGCACCAAGGCCATCCATGGCACCCACTTCAGCTCTGCCCTCGCGATCGCTGGAGCCCCCTGAGGAACTCACGCAGACGCGGCTGCACCGCCTCATCAATCCCAACTTCTACGGCTATCAGGACGCCCCCTGGAAGATCTTCCTGCGCAAAGAGGTGTTTTACCCCAAGGACAGCTACAGCCATCCTGTGCAGCTTGACCTCCTGTTCCGGCAGATCCTGCACGACACGCTCTCCGAGGCCTGCCTTCGCATCTCTGAGGATGAGAGGCTCAGGATGAAGGCCTTGTTTGCCCAGAACCAGCTGGACACACAGAAGCCTCTGGTAACGGAAAGCGTGAAGCGGGCCGTGGTCAGCACTGCACGAGACACCTGGGAGGTCTACTTCTCCCGCATCTTCCCCGCCACGGGCAGCGTGGGCACTGGTGTGCAGCTCCTAGCTGTGTCCCACGTGGGCATCAAACTCCTGAGGATGGTCAAGGGTGGCCAGGAGGCCGGCGGGCAGCTGCGGGTCCTGCGTGCATACAGCTTTGCAGATATCCTGTTTGTGACCATGCCCTCCCAGAACATGCTGGAGTTCAACCTGGCCAGTGAGAAGGTCATCCTCTTCTCAGCCCGAGCGCACCAGGTCAAGACCCTGGTAGATGACTTCATCTTGGAGCTGAAGAAGGACTCTGACTACGTGGTCGCTGTGAGGAACTTCCTGCCTGAGGACCCTGCGCTGCTGGCTTTCCACAAGGGTGACATCATACACCTGCAGCCCCTAGAGCCACCTCGAGTGGGCTACAGTGCTGGCTGCGTGGTTCGCAGGAAGGTGGTGTACCTGGAGGAGCTGCGACGTAGAGGCCCCGACTTTGGCTGGAGGTTCGGGACCATCCACGGGCGCGTGGGCCGCTTCCCTTCGGAGCTGGTGCAGCCCGCTGCTGCCCCCGACTTCCTGCAGCTGCCAACGGAGCCAGGCCGCGGCCGAGCAGCCGCCGTGGCCGCTGCTGTGGCCTCTGCAGCCGCTGCACAGGAGGTGGGCCGCAGGAGAGAGGGTCCCCCAGTCAGGGCCCGCTCTGCTGACCATGGGGAGGACGCCCTGGCGCTCCCACCCTACACAATGCTCGAGTTTGCCCAGAAGTATTTCCGAGACCCTCAGAGGAGACCCCAGGATGGCCTCAGGCTGAAATCCAAGGAGCCTCGGGAGTCCAGAACCTTGGAGGACATGCTTTGCTTCACCAAGACTCCCCTCCAGGAATCCCTCATCGAACTCAGCGACAGCAGCCTCAGCAAGATGGCCACCGACATGTTCCTAGCTGTAATGAGGTTCATGGGGGATGCCCCACTGAAGGGCCAGAGTGACCTGGACGTGCTTTGTAACCTCCTGAAGCTGTGCGGGGACCATGAGGTCATGCGGGATGAATGTTACTGCCAAGTTGTGAAGCAGATCACAGACAATACCAGCTCCAAGCAGGACAGCTGCCAGCGAGGCTGGAGGCTGCTGTATATCGTGACCGCCTACCACAGCTGCTCTGAGGTCCTCCACCCACACCTCACTCGCTTCCTCCAAGACGTGAGCCGGACCCCAGGCCTGCCCTTTCAGGGGATCGCCAAGGCCTGCGAGCAGAACCTGCAGAAAACCTTGCGCTTCGGAGGTCGTCTGGAGCTCCCCAGCAGCATAGAGCTTCGGGCCATGTTGGCAGGCCGCAGTTCCAAGAGGCAACTCTTTCTTCTTCCTGGAGGCCTTGAACGCCATCTCAAAATCAAAACATGCACTGTGGCCCTGGACGTGGTGGAAGAGATATGTGCTGAGATGGCTCTGACACGCCCTGAGGCCTTCAATGAATATGTTATCTTCGTTGTCACCAACCGTGGCCAGCATGTGTGCCCACTCAGTCGCCGTGCTTACATCCTGGATGTGGCCTCAGAGATGGAGCAGGTGGACGGCGGCTACATGCTCTGGTTCCGGCGTGTGCTCTGGGATCAGCCACTCAAGTTCGAGAATGAGCTATATGTGACCATGCACTACAACCAGGTCCTGCCTGACTACCTGAAGGGACTCTTCAGCAGTGTGCCGGCCAGCCGGCCCAGCGAGCAGCTGCTGCAGCAGGTGTCCAAGCTGGCTTCACTGCAGCATCGCGCCAAGGACCACTTCTACCTGCCGAGCGTGCGGGAAGTCCAGGAGTACATCCCAGCCCAGCTCTACCGTACAACGGCAGGCTCGACCTGGCTCAACCTGGTCAGCCAGCACCGGCAGCAGACACAGGCGCTCAGCCCCCACCAGGCCCGTGCCCAGTTTCTGGGCCTCCTCAGCGCCTTACCTATGTTCGGCTCCTCCTTCTTCTTCATCCAGAGCTGCAGCAACATTGCTGTGCCAGCCCCTTGCATCCTTGCCATCAACCACAATGGCCTCAACTTTCTCAGCACAGAGACTCATGAATTGATGGTGAAGTTCCCCCTGAAGGAGATCCAGTCGACGCGGACCCAGCGGCCCACGGCCAACTCCAGCTACCCCTATGTGGAGATTGCGCTGGGGGACGTGGCGGCCCAGCGCACCTTGCAGCTGCAGCTGGAGCAGGGACTGGAACTGTGTCGTGTGGTGGCCGTGCACGTGGAGAACCTGCTCAGTGCCCATGAGAAGCGGCTCACATTGCCCCCCAGCGAGATCACCCTGCTCTGA MAEGLERVRISASELRGILATLAPQAGSRENMKELKEARPRKDNRRPDLEIYKPGLSRLRNKPKIKEPPGSEEFKDEIVNDRDCSAVENGTQPVKDVCKELNNQEQNGPIDPENNRGQESFPRTAGQEDRSLKIIKRTKKPDLQIYQPGRRLQTVSKESASRVEEEEVLNQVEQLRVEEDECRGNVAKEEVANKPDRAEIEKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGSAKRYSRSDKRRNRYRTRSTSSAGSNNSAEGAGLTDNGCRRRRQDRTKERPRLKKQVSVSSTDSLDEDRIDEPDGLGPRRSSERKRHLERNWSGRGEGEQKNSAKEYRGTLRVTFDAEAMNKESPMVRSARDDMDRGKPDKGLSSGGKGSEKQESKNPKQELRGRGRGILILPAHTTLSVNSAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKTQTPQLHFLDTDDEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVGPTNGVYPGPYYPGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVADNQELQLSNLLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKDALHPQPAIHAVP*AARGGWCGGHDTAGRPPGNHCAVQPQD*I*TEPHLHIHWEHPGVGEPIPNVWNLWAGAGAAVQRTGPGRESPAPLCCCKSRLRQNARCQTEPVHNH*WRERLWQN*GHQADSALPGRHEPETGGHAADKDPGGNTPLGVLR*CQNRQERQLQPLWEVCGNLSGRGRDLWCHNLPVPA*EIQDRVSGQKREELPHLLRVAGRVACPAQAGL*PARG*DLLLSEPGWEL*DSRKERCR*LSPAPGCHGGVGLQQ*GPGQHLPHPGLHPAPGQRLL*EV*DGCTGGGLSGECPRDPGRGRAAADLP*GPAEGHHLQSDRDNAREDLHAPNCGERCGCQGRHRQGLVCTAVQLAHHQGQRAGVPKAGHTVHRHPGHLWFRGPELQQL*AAVY*LRKREPSVPFQQDRLPGGAGGVHP*ADRLAGDHLC*QPALHQPHLTEALWHPADP*RPVLLSPGYRPHLPTEVPLPSWRQPALFQTQDAAA*VHHQALCRQGHLPGAQVPGQEPRPSAPGCAGPVRTEPDTGGGTPLLQPCPTGCPSAPGQEQLRHSALQGAHCGRQVPAVTPGSGGKDGEVQPLVHALPEAQPQEGARSL*ARCGNGTITLFRGAGDREDPQGGISSAPAFPGVHRQVLLSSGPQA*PAG*WGHVCVSAESPVQSHAKHVPCWGQQAVP*GTPIPAAGEYARACPESGSPHSAALPPWLLH*AAIPLSAPQDHPAAKPGPWLPCQATLSADEEESGEVPVPGTRIREPPTLSQAEGRVEVPGGGGAAVGAGGAEQAGGSRCGAPGGTG*AGWALASSGRPRAGPGASGGPCEDSSTPG*APCHTAPGHQQLSYGQVCPVPLQGTCLWDADSAPEDTPHAAASRAPCRSREHLQADPALHGRPPPAWCPGEHLRELHRAEGAGGA*AAG*DPGTAGQSGVAQSQCPQC*AGLAAAGRLPQWLCTFPVLQQVPSQVCV*LWAEWLPGCVSAPPHAGHGPGPTAGLGGCPHLTPDPARVDSDL*EGQHGAGRGLLQW*PVLLPGALLEYGGRGGWRHSEAQGAGRWLARLDRGHEEWCPVGRAGWPRLRVRPGVGPGAAQGLPSTEVLLHCGHRGACSQQGRPQSGVWEQLGLG*GHVH*TPAPGAHAQST*L*WVQQPQSGRYKWGD*GPKRDSNPPRVRQSWRACCAPQGAGLLPG*PL*PCAVLRGCGPGEANSHCLPHERGRPARWRQQ*WY*RHPQETPRAKANPRPGCLHIGSAASLHPQTGRAAGPGDDPAGHGTPAAAPECCPEILARRETPSTRGTADVCRHRSPCQTRAPACHSKALGPSPSGQGSKAPHQACGCPCSSSGSGFSRNHFTLPRAGPVLYAQL*ALPTAHTADQEYCQAVPAAVPGRPA*GPQEGWRESVHEAARPS*GGPDDPERADDPPGSCTWHPGVQRGRGPGEAGDQCTKAIHGTHFSSALAIAGAP*GTHADAAAPPHQSQLLRLSGRPLEDLPAQRGVLPQGQLQPSCAA*PPVPADPARHALRGLPSHL*G*EAQDEGLVCPEPAGHTEASGNGKREAGRGQHCTRHLGGLLLPHLPRHGQRGHWCAAPSCVPRGHQTPEDGQGWPGGRRAAAGPACIQLCRYPVCDHALPEHAGVQPGQ*EGHPLLSPSAPGQDPGR*LHLGAEEGL*LRGRCEELPA*GPCAAGFPQG*HHTPAAPRATSSGLQCWLRGSQEGGVPGGAAT*RPRLWLEVRDHPRARGPLPFGAGAARCCPRLPAAANGARPRPSSRRGRCCGLCSRCTGGGPQERGSPSQGPLC*PWGGRPGAPTLHNARVCPEVFPRPSEETPGWPQAEIQGASGVQNLGGHALLHQDSPPGIPHRTQRQQPQQDGHRHVPSCNEVHGGCPTEGPE*PGRAL*PPEAVRGP*GHAG*MLLPSCEADHRQYQLQAGQLPARLEAAVYRDRLPQLL*GPPPTPHSLPPRREPDPRPALSGDRQGLRAEPAENLALRRSSGAPQQHRASGHVGRPQFQEATLSSSWRP*TPSQNQNMHCGPGRGGRDMC*DGSDTP*GLQ*ICYLRCHQPWPACVPTQSPCLHPGCGLRDGAGGRRLHALVPACALGSATQVRE*AICDHALQPGPA*LPEGTLQQCAGQPAQRAAAAAGVQAGFTAASRQGPLLPAERAGSPGVHPSPALPYNGRLDLAQPGQPAPAADTGAQPPPGPCPVSGPPQRLTYVRLLLLLHPELQQHCCASPLHPCHQPQWPQLSQHRDS*IDGEVPPEGDPVDADPAAHGQLQLPLCGDCAGGRGGPAHLAAAAGAGTGTVSCGGRARGEPAQCP*EAAHIAPQRDHPAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32044 ZNF586::ENSG00000286125 ENSG00000083828.16::ENSG00000286125.3 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF586 ENSG00000083828.16 protein_coding + + chr19:57769655-57819939:+ chr19:57769878:+ chr19:58281023-58331307:+ chr19:58281246:+ ENSG00000286125 ENSG00000286125.3 lncRNA + + chr19:56669941-56823395:+ chr19:56789928:+ chr19:57181309-57334763:+ chr19:57301296:+ chr19:57772774,chr19:57772775 chr19:56780313,chr19:56780311 NA NA chr19:58284142,chr19:58284143 chr19:57291681,chr19:57291679 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 18 19 18 ONLY_REF_SPLICE YES_LDAS 0.1967 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32046 ZMYM4::ARL15 ENSG00000146463.12::ENSG00000185305.12 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1777 FALSE NA FALSE NA ZMYM4 ENSG00000146463.12 protein_coding + + chr1:35268709-35422058:+ chr1:35361789:+ chr1:35734310-35887659:+ chr1:35827390:+ ARL15 ENSG00000185305.12 protein_coding - - chr5:53883942-54310582:- chr5:54113410:- chr5:53179772-53606412:- chr5:53409240:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-FCS|337-373|1.5e-12^YHS|344-372|0.0011^zf-FCS|385-425|8.9e-11^YHS|416-424|0.077^zf-FCS|442-475|2.3e-08^YHS|467-477|0.042^zf-FCS|482-521|1.1e-11^YHS|512-523|0.45^zf-FCS|527-565|3.7e-05^YHS|551-564|0.15^zf-FCS|578-608|0.00095^YHS|602-612|0.18^zf-FCS|683-719|3.1e-09^YHS|697-719|6.1e-06^zf-FCS|725-760|3.1e-12^YHS|750-759|0.0068^zf-FCS|772-806|5.7e-06^YHS|797-805|0.027^zf-FCS-PARTIAL|813-840~|7.1e-09 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr5] 17 12 17 10.27 ONLY_REF_SPLICE YES_LDAS 0.1449 GT 1.9086 AG 1.9899 ENST00000314607.11 1-840 ENST00000504924.6 254-615 chr1|+|[0]35269047-35269085[2]|[0]35325360-35325405[0]|[1]35358925-35359446[0]|[1]35361194-35361255[2]|[0]35361619-35361789[2]<==>chr5|-|[2]53886561-53886713[0]|[2]54113202-54113410[1] atggcggagagagaggtggagtccggcccccgaaagaggtttgaacaaaaaagtggtgcagtttttgatgaaattgtagagaactgtggtggtatcatggatacagaaatgtctgaagatatagaccacaacttaactcctacccttgacagcatgtcttatggaatgccgaatcaaacaggatctgaaaattcattgctggatgaagatgattattttttgaactctggggatcttgcaggaattccagtcgttggtagtgacaatgaggatgaacaggattttagttcaaaggacaatcttgtttcttcaattcatactgatgatagcttggaagtagagagaagagtcacacagcatgaatcagacaatgaaaatgaaatacaaattcaaaataagttaaaaaaagactttcctaaacaatttgatcaggtttctgtctttaaatcaatacggaaagattttagtctagtaagagaaaacagcaaagagacattttctggaaaggagaaaaatagagacctaacttatgaacgtgaaaaacggttggataaaccccataaagatttggattcaaggttgaaaagcagtttttttgataaagcagctaatcaagttgaagaaacattacatacccatttaccacaaaccccagaaacaaactttagggattccagctacccatttgccaataaagaatccattggttcggaactggggaattcctttgcatcaaatattagaattaaagaagaacctttggatgatgagtatgacaaagcaatggcaccacagcagggactactagacaaaataaaagatgaacctgacaatgctcaaGGGCTGATAACATCCGGAAATACTGGAGCCGCTACTACCAAGGATCTCAAGGGGTAATATTTGTATTAGACAGTGCCTCTTCAGAGGATGATTTAGAAGCTGCTAGAAATGAGCTGCACTCAGCTCTTCAGCATCCACAGTTATGCACTTTACCCTTTTTAATATTGGCCAATCATCAAGACAAGCCAGCAGCTCGCTCAGTACAAGAGATCAAAAAATATTTTGAACTTGAACCACTTGCACGTGGAAAACGCTGGATTCTACAGCCCTGCTCACTGGATGACATGGATGCACTGAAAGACAGCTTCTCTCAGCTGATTAATTTGTTAGAAGAAAAAGACCATGAAGCTGTAAGAATGTGA MAEREVESGPRKRFEQKSGAVFDEIVENCGGIMDTEMSEDIDHNLTPTLDSMSYGMPNQTGSENSLLDEDDYFLNSGDLAGIPVVGSDNEDEQDFSSKDNLVSSIHTDDSLEVERRVTQHESDNENEIQIQNKLKKDFPKQFDQVSVFKSIRKDFSLVRENSKETFSGKEKNRDLTYEREKRLDKPHKDLDSRLKSSFFDKAANQVEETLHTHLPQTPETNFRDSSYPFANKESIGSELGNSFASNIRIKEEPLDDEYDKAMAPQQGLLDKIKDEPDNAQGLITSGNTGAATTKDLKG*YLY*TVPLQRMI*KLLEMSCTQLFSIHSYALYPF*YWPIIKTSQQLAQYKRSKNILNLNHLHVENAGFYSPAHWMTWMH*KTASLS*LIC*KKKTMKL*EC FALSE FALSE NA NA TRUE hsa-mir-581 chr5:53951504-53951599:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32048 SMG6::MYO15A ENSG00000070366.14::ENSG00000091536.20 NCIH841 SRR8615975 SRR8670705 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3279 TRUE 1235 SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2188399:- chr17:1963133-2207079:- chr17:2091693:- MYO15A ENSG00000091536.20 protein_coding + + chr17:18108756-18179802:+ chr17:18118582:+ chr17:18012070-18083116:+ chr17:18021896:+ chr17:2188028 chr17:18116816 NA NA chr17:2091322 chr17:18020130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SMG6:Oncogene"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:15.80Mb] 8 21 8 15.08 ONLY_REF_SPLICE YES_LDAS 0.1226 GT 1.8256 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32051 PPIA::OGDH ENSG00000196262.15::ENSG00000105953.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1779 FALSE NA FALSE NA PPIA ENSG00000196262.15 protein_coding + + chr7:44796680-44824564:+ chr7:44796793:+ chr7:44836279-44864163:+ chr7:44836392:+ OGDH ENSG00000105953.16 protein_coding + + chr7:44606572-44709066:+ chr7:44693825:+ chr7:44646171-44748665:+ chr7:44733424:+ chr7:44798356,chr7:44798342 chr7:44687891,chr7:44687874 NA NA chr7:44837955,chr7:44837941 chr7:44727490,chr7:44727473 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pro_isomerase-PARTIAL|7-69~|2.6e-37 none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.09Mb];LOCAL_REARRANGEMENT:+:[87614] 709 482 708.74 458.75 ONLY_REF_SPLICE YES_LDAS 9.6642 GT 1.8256 AG 1.8295 ENST00000415933.5 1-69 ENST00000444676.5 1381-3117 chr7|+|[0]44796725-44796793[2]<==>chr7|+|[0]44693825-44694004[2]|[0]44694424-44694576[2]|[0]44696025-44696127[0]|[1]44696429-44696557[0]|[1]44696914-44697064[1]|[2]44697370-44697497[0]|[1]44697604-44697782[2]|[0]44698192-44698263[2]|[0]44700141-44700269[2]|[0]44701543-44701615[0]|[1]44707225-44707388[2]|[0]44707582-44707736[1]|[2]44707879-44707999[2] atggtcaaccccaccgtgttcttcgacattgccgtcgacggcgagcccttgggccgcgtctcctttgagATCGGCTTCACCACCGACCCTCGGATGGCCCGCTCCTCCCCCTACCCCACTGACGTGGCCCGAGTGGTGAATGCCCCCATTTTCCACGTGAACTCAGATGACCCCGAGGCTGTCATGTACGTGTGCAAAGTGGCGGCCGAGTGGAGGAGCACCTTCCACAAGGACGTGGTTGTCGATTTGGTGTGTTACCGGCGCAACGGCCACAACGAGATGGATGAGCCCATGTTCACGCAGCCGCTCATGTACAAGCAGATCCGCAAGCAGAAGCCTGTGTTACAGAAGTACGCTGAGCTGCTGGTGTCGCAGGGTGTGGTCAACCAGCCTGAGTATGAGGAGGAAATTTCCAAGTATGATAAGATCTGTGAGGAAGCTTTTGCCAGATCTAAAGATGAGAAGATCTTGCACATTAAGCACTGGCTGGACTCTCCCTGGCCTGGCTTCTTCACCCTGGACGGGCAGCCCAGGAGCATGTCCTGCCCCTCCACGGGTCTGACGGAGGATATTCTGACACACATCGGGAATGTGGCTAGTTCTGTGCCTGTGGAAAACTTTACTATTCATGGAGGGCTGAGCCGGATCTTGAAGACTCGTGGGGAAATGGTGAAGAACCGGACTGTGGACTGGGCTCTAGCGGAGTACATGGCGTTTGGCTCGCTCCTGAAGGAGGGCATCCACATTCGGCTGAGCGGCCAGGACGTGGAGCGGGGCACATTCAGCCACCGCCACCATGTGCTCCATGACCAGAATGTGGACAAGAGAACCTGCATCCCCATGAACCATCTCTGGCCCAATCAGGCCCCCTATACTGTGTGCAACAGCTCACTGTCTGAGTACGGCGTGCTGGGCTTTGAGCTGGGCTTCGCCATGGCCAGTCCTAATGCCCTGGTCCTCTGGGAAGCCCAATTTGGTGACTTCCACAACACGGCCCAGTGTATCATCGACCAGTTCATCTGCCCGGGACAAGCCAAGTGGGTGCGGCAGAATGGCATCGTGTTGCTGCTGCCCCATGGCATGGAGGGCATGGGTCCAGAACATTCCTCCGCCCGCCCAGAGCGGTTCTTGCAGATGTGCAACGATGACCCAGATGTCCTGCCAGACCTTAAAGAAGCCAACTTCGACATCAATCAGCTATATGACTGCAATTGGGTTGTTGTCAACTGCTCCACTCCTGGCAACTTCTTCCACGTGCTACGACGCCAGATCCTGCTGCCATTCCGGAAGCCGTTAATTATCTTCACCCCCAAATCCCTGTTGCGCCACCCCGAGGCCAGATCCAGCTTTGATGAGATGCTTCCAGGAACCCACTTCCAGCGGGTGATCCCAGAAGATGGCCCTGCAGCTCAGAACCCAGAAAATGTCAAAAGGCTTCTCTTCTGCACCGGCAAAGTGTATTATGACCTCACCCGGGAGCGCAAAGCACGCGACATGGTGGGGCAGGTGGCCATCACAAGGATTGAGCAGCTGTCGCCATTCCCCTTTGACCTCCTGCTGAAGGAGGTGCAGAAGTACCCCAATGCTGAGCTGGCCTGGTGCCAGGAGGAGCACAAGAACCAAGGCTACTATGACTACGTGAAGCCAAGACTTCGGACCACCATCAGCCGCGCCAAGCCCGTCTGGTATGCCGGCCGGGACCCAGCGGCTGCTCCAGCCACCGGCAACAAGAAGACCCACCTGACGGAGCTGCAGCGCCTCCTGGACACGGCCTTCGACCTGGACGTCTTCAAGAACTTCTCGTAG MVNPTVFFDIAVDGEPLGRVSFEIGFTTDPRMARSSPYPTDVARVVNAPIFHVNSDDPEAVMYVCKVAAEWRSTFHKDVVVDLVCYRRNGHNEMDEPMFTQPLMYKQIRKQKPVLQKYAELLVSQGVVNQPEYEEEISKYDKICEEAFARSKDEKILHIKHWLDSPWPGFFTLDGQPRSMSCPSTGLTEDILTHIGNVASSVPVENFTIHGGLSRILKTRGEMVKNRTVDWALAEYMAFGSLLKEGIHIRLSGQDVERGTFSHRHHVLHDQNVDKRTCIPMNHLWPNQAPYTVCNSSLSEYGVLGFELGFAMASPNALVLWEAQFGDFHNTAQCIIDQFICPGQAKWVRQNGIVLLLPHGMEGMGPEHSSARPERFLQMCNDDPDVLPDLKEANFDINQLYDCNWVVVNCSTPGNFFHVLRRQILLPFRKPLIIFTPKSLLRHPEARSSFDEMLPGTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPNAELAWCQEEHKNQGYYDYVKPRLRTTISRAKPVWYAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKNFS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32055 GLG1::ENSG00000285710 ENSG00000090863.12::ENSG00000285710.1 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74471173:- chr16:74481325-74641042:- chr16:74505071:- ENSG00000285710 ENSG00000285710.1 lncRNA - - chr16:70349085-70372166:- chr16:70349597:- chr16:70382988-70406069:- chr16:70383500:- chr16:74470924,chr16:74470924,chr16:74470924,chr16:74470947,chr16:74470981 chr16:70357354,chr16:70357356,chr16:70357274,chr16:70357277,chr16:70357609 NA NA chr16:74504822,chr16:74504822,chr16:74504822,chr16:74504845,chr16:74504879 chr16:70391257,chr16:70391259,chr16:70391177,chr16:70391180,chr16:70391512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 81 43 81 43 ONLY_REF_SPLICE YES_LDAS 1.0264 GT 1.8295 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32057 MLLT3::TMIGD1 ENSG00000171843.17::ENSG00000182271.13 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1782 FALSE NA FALSE NA MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20448123:- chr9:20341667-20622498:- chr9:20448121:- TMIGD1 ENSG00000182271.13 protein_coding - - chr17:30316333-30334059:- chr17:30329529:- chr17:28643351-28661077:- chr17:28656547:- chr9:20444925,chr9:20444930,chr9:20444927 chr17:30332050,chr17:30332052,chr17:30332530 NA NA chr9:20444923,chr9:20444928,chr9:20444925 chr17:28659068,chr17:28659070,chr17:28659548 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame YEATS|28-107|3.9e-31^pYEATS|31-94|6e-13 Ig_3-PARTIAL|~83-103|5.7e-07^Ig_2-PARTIAL|~83-120|1.5e-08^ig-PARTIAL|~83-105|5.3e-08^I-set-PARTIAL|~83-103|0.022^V-set-PARTIAL|~83-104|0.092^Ig_5-PARTIAL|~83-110|0.018^C2-set-PARTIAL|~83-114|0.00036^Lep_receptor_Ig-PARTIAL|~83-109|0.023^C2-set_2-PARTIAL|~83-104|0.034^Ig_4-PARTIAL|~83-112|0.11^Ig_2|125-212|2.8e-15^ig|130-201|4.5e-15^Ig_3|131-198|1.3e-17^I-set|131-212|1.1e-18^Lep_receptor_Ig|131-197|5.1e-05^Adeno_E3_CR1|131-214|5.3e-06^V-set|132-212|1.6e-07^Ig_C17orf99|133-205|5.1e-06^Ig_5|135-204|2.9e-06^C2-set|135-152|1.1^C2-set_2|135-180|0.00017^Ig_4|139-207|0.00023^C2-set|164-212|0.00032^Adeno_E3_CR1|243-258|5.6 ["MLLT3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr17] 64 70 64 70 ONLY_REF_SPLICE YES_LDAS 1.1092 GT 1.6402 AG 1.7232 ENST00000380338.9 1-420 ENST00000328886.5 83-789 chr9|-|[2]20448123-20448266[0]|[2]20456704-20456786[1]|[0]20620654-20620834[0]|[2]20622245-20622256[0]<==>chr17|-|[2]30316687-30316690[2]|[1]30317193-30317233[0]|[2]30318810-30318913[1]|[0]30324816-30325094[1]|[0]30329251-30329529[1] atggctagctcgtgtgccgtgcaggtgaagctggagctggggcaccgcgcccaggtgaggaaaaaacccaccgtggagggcttcacccacgactggatggtgttcgtacgcggtccggagcacagtaacatacagcactttgtggagaaagtcgtcttccacttgcacgaaagctttcctaggccaaaaagagtgtgcaaagatccaccttacaaagtagaagaatctgggtatgctggtttcattttgccaattgaagtttattttaaaaacaaggaagaacctaggaaagtccgctttgattatgacttattcctgcatcttgaaggccatccaccagtgaatcacctccgctgtgaaaagctaactttcaacaaccccacagaggactttaggagaaagttgctgaaggcaggagggGTTCTGTTTTAACTGTGAATGGTAAAACTGAGAACTATATCCTGGATACTACACCTGGCTCCCAAGCATCTCTGATATGTGCTGTTCAAAACCACACCAGAGAGGAAGAACTGCTCTGGTACCGAGAGGAGGGGAGAGTGGATTTGAAATCTGGAAACAAAATCAATTCCAGCTCTGTCTGTGTCTCTTCCATCAGTGAAAATGACAACGGAATCAGCTTTACCTGCAGGCTGGGGAGGGATCAGTCCGTGTCCGTTTCGGTGGTGCTGAATGTTACTTTTCCTCCTCTCCTAAGTGGAAACGACTTCCAAACAGTTGAGGAAGGCAGTAATGTGAAGTTGGTTTGCAATGTGAAAGCCAACCCCCAGGCTCAAATGATGTGGTACAAAAACAGTAGTCTCCTCGATTTAGAGAAAAGCCGTCACCAAATCCAACAGACAAGTGAGTCTTTTCAGCTGTCAATCACCAAAGTCGAGAAGCCTGACAACGGAACCTACAGTTGTATTGCAAAGTCATCTCTGAAAACGGAGAGCTTGGACTTTCACCTGATTGTTAAAGATAAAACTGTGGGTGTACCAATAGAGCCCATTATTGCTGCATGTGTTGTGATCTTTCTGACATTGTGCTTTGGACTGATTGCTAGAAGAAAGAAAATAATGAAGCTCTGCATGAAGGATAAAGACCCTCACAGTGAAACAGCTCTATGA MASSCAVQVKLELGHRAQVRKKPTVEGFTHDWMVFVRGPEHSNIQHFVEKVVFHLHESFPRPKRVCKDPPYKVEESGYAGFILPIEVYFKNKEEPRKVRFDYDLFLHLEGHPPVNHLRCEKLTFNNPTEDFRRKLLKAGGVLF*L*MVKLRTISWILHLAPKHL*YVLFKTTPERKNCSGTERRGEWI*NLETKSIPALSVSLPSVKMTTESALPAGWGGISPCPFRWC*MLLFLLS*VETTSKQLRKAVM*SWFAM*KPTPRLK*CGTKTVVSSI*RKAVTKSNRQVSLFSCQSPKSRSLTTEPTVVLQSHL*KRRAWTFT*LLKIKLWVYQ*SPLLLHVL*SF*HCALD*LLEERK**SSA*RIKTLTVKQLY FALSE TRUE hsa-mir-4474 chr9:20502265-20502342:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32061 BLTP3A::ANKS1A ENSG00000065060.18::ENSG00000064999.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1785 FALSE NA FALSE NA BLTP3A ENSG00000065060.18 protein_coding + + chr6:34792083-34877514:+ chr6:34792294:+ chr6:34759860-34845291:+ chr6:34760071:+ ANKS1A ENSG00000064999.16 protein_coding + + chr6:34889255-35091406:+ chr6:34981690:+ chr6:34857032-35059183:+ chr6:34949467:+ chr6:34797713,chr6:34797713 chr6:34971167,chr6:34971165 NA NA chr6:34765490,chr6:34765490 chr6:34938944,chr6:34938942 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Chorein_N-PARTIAL|2-44~|4.3e-20 SAM_1|720-780|2.2e-17^SAM_2|720-780|2.1e-16^SAM_1|789-851|7.2e-19^SAM_2|790-849|5.6e-12^PTB|963-1066|1.2e-05^PID_2|963-1084|0.00017^PID|986-1088|2.7e-21 none 20 8 20 7.27 ONLY_REF_SPLICE YES_LDAS 0.2258 GT 1.8892 AG 1.6729 ENST00000192788.6 1-44 ENST00000649117.1 499-3585 chr6|+|[0]34792251-34792294[1]<==>chr6|+|[0]34981690-34981986[2]|[0]34982752-34982827[0]|[1]34983113-34983214[0]|[1]34983324-34983425[0]|[1]34985082-34985278[2]|[0]34989224-34989316[2]|[0]34994302-34994422[0]|[1]35017473-35018059[2]|[0]35054099-35054165[0]|[1]35060147-35060253[2]|[0]35078558-35078656[2]|[0]35079516-35079668[2]|[0]35079821-35079928[2]|[0]35080994-35081158[2]|[0]35082691-35082816[2]|[0]35083155-35083226[2]|[0]35083417-35083503[2]|[0]35084121-35084258[2]|[0]35085766-35085936[2]|[0]35086270-35086368[2]|[0]35086952-35087071[2] atggccgggatcattaagaagcagatcctgaaacacctgtcccgAACAATGACAACGAGACAGCCCTGCATTGTGCAGCGCAGTATGGCCACACAGAGGTGGTGAAGGTGCTCTTAGAGGAGCTGACGGACCCCACCATGCGCAACAACAAATTCGAGACCCCTTTGGACCTGGCAGCACTGTACGGGCGACTGGAGGTGGTGAAAATGCTCCTTAATGCACACCCCAACCTCCTGAGCTGCAACACTAAGAAGCACACCCCTCTGCACTTGGCAGCAAGGAATGGCCACAAAGCCGTGGTCCAGGTCCTCCTCGATGCTGGCATGGACAGCAACTACCAGACGGAGATGGGCAGTGCTTTGCATGAGGCTGCTTTGTTTGGCAAGACCGATGTGGTGCAAATCCTGCTGGCTGCAGGAACTGACGTCAACATAAAAGATAACCATGGACTGACTGCCCTAGACACTGTTCGGGAACTGCCTTCTCAAAAGAGCCAGCAAATAGCAGCATTAATTGAAGATCACATGACTGGAAAAAGAAGTACAAAAGAAGTAGATAAAACCCCCCCACCCCAGCCACCTCTCATCTCCAGTATGGACTCCATATCACAGAAGTCTCAGGGTGACGTGGAGAAAGCAGTGACTGAACTGATTATAGATTTTGATGCAAATGCTGAAGAAGAGGGTCCCTACGAAGCTCTGTATAATGCCATCTCCTGCCATTCGTTGGACAGCATGGCCAGCGGGCGATCATCTGACCAAGACTCCACGAACAAGGAGGCTGAGGCAGCAGGAGTGAAACCTGCTGGAGTGAGGCCTAGGGAACGTCCACCACCTCCAGCAAAGCCACCGCCCGATGAAGAGGAAGAAGACCACATAGATAAGAAGTATTTTCCCTTGACAGCTTCTGAGGTTCTGTCCATGAGACCTAGGATTCATGGGAGTGCAGCCCGGGAAGAAGACGAACACCCTTATGAACTGTTGTTAACAGCAGAGACAAAGAAAGTGGTGTTGGTGGATGGAAAAACAAAAGACCACAGGCGGAGCAGCAGCAGCCGGAGCCAGGACTCTGCGGAGGGGCAGGACGGGCAGGTCCCAGAGCAGTTCTCAGGCCTCCTCCACGGCTCCTCCCCGGTGTGCGAGGTGGGGCAGGACCCTTTCCAGCTGCTCTGTACCGCTGGCCAGAGCCATCCAGACGGGTCCCCCCAGCAGGGCGCCTGCCACAAGGCCAGCATGCAGCTGGAGGAGACGGGTGTGCATGCTCCTGGAGCCTCCCAGCCCAGTGCCCTGGACCAGAGCAAGAGAGTGGGCTACCTCACAGGCCTGCCCACCACCAACAGCCGCTCGCACCCTGAAACTTTGACTCACACAGCATCTCCGCACCCTGGTGGTGCTGAGGAAGGAGACCGGAGTGGGGCCAGGAGCCGAGCGCCTCCCACTAGCAAACCCAAAGCTGAACTCAAACTCAGCCGCAGCTTGTCCAAGTCTGACTCTGATCTCCTGACCTGCTCACCCACAGAGGACGCTACCATGGGGAGTCGGAGTGAGTCCTTATCCAACTGCAGCATTGGGAAGAAAAGGCTAGAGAAGTCACCCTCCTTCGCCTCGGAGTGGGATGAGATTGAGAAAATCATGAGTTCTATTGGAGAAGGGATTGACTTTTCTCAGGAACGGCAGAAGATCTCAGGTTTACGGACGCTGGAGCAGAGTGTCGGGGAGTGGCTGGAGTCGATTGGGCTGCAGCAGTATGAGAGCAAGTTGCTTCTGAATGGCTTTGACGATGTCCACTTCCTGGGGTCTAATGTGATGGAAGAGCAGGACCTGCGGGACATCGGCATCAGCGACCCACAGCACCGGCGGAAGCTGCTCCAGGCGGCACGCTCCCTACCCAAGGTGAAGGCTCTGGGTTATGACGGGAACAGCCCCCCTAGCGTGCCCTCCTGGCTGGACTCCCTGGGGCTGCAGGACTACGTCCATTCCTTCTTGTCAAGTGGTTACAGCTCCATTGACACCGTGAAGAACCTCTGGGAGCTAGAGCTCGTCAATGTCCTGAAGGTCCAGCTGCTCGGCCATCGCAAGCGCATCATCGCCTCCCTCGCAGACAGACCGTACGAGGAGCCGCCCCAGAAGCCCCCCAGATTCTCCCAGCTGAGGTGCCAAGATTTGCTCTCCCAGACGTCATCCCCACTGAGTCAGAATGATTCCTGCACTGGGCGGTCGGCAGATCTGCTGCTGCCTCCAGGGGACACAGGCAGGAGGCGCCATGACAGTCTCCATGACCCTGCGGCACCCTCCCGAGCGGAGCGCTTCAGGATCCAGGAGGAGCACCGTGAGGCCAAGCTGACCCTGCGGCCCCCGAGCCTGGCAGCCCCCTACGCCCCAGTGCAGAGTTGGCAACACCAGCCAGAGAAACTCATCTTCGAGTCCTGTGGTTATGAAGCCAATTATCTGGGCTCCATGCTGATCAAAGATCTGCGAGGGACAGAATCCACGCAAGACGCCTGTGCCAAGATGCGGAAATCTACGGAGCACATGAAGAAGATCCCCACCATCATCCTGTCCATCACATACAAAGGTGTCAAGTTCATCGATGCCTCCAACAAGAACGTCATTGCAGAGCACGAGATCCGGAACATTTCCTGTGCGGCCCAGGACCCGGAGGACCTCTGTACCTTTGCCTACATCACCAAGGACCTGCAGACCAGCCACCACTATTGCCATGTGTTCAGCACCGTGGATGTGAACCTGACCTACGAGATCATCCTGACGCTGGGGCAGGCCTTCGAAGTGGCCTATCAGTTGGCCCTGCAGGCCCAGAAGTCCAGGGCGACGGGCGCCTCTGCAGCTGAGATGATTGAAACAAAATCTTCCAAACCGGTGCCTAAGCCTCGGGTCGGCGTGAGGAAATCCGCAGTGCCGCTGCCCCCCGATAGTCGCTGTTGTTACTGTCACACCTGCACCACCCACCGTCCTTCCTACCTACCGCTGCCATCTGTTAGTCCTGGAGTCAAGCTGGAACCACCTGATATGGACCAAGATGCCCAATCCCATGCCAGTGTCTCCTGGGTTGTGGACCCCAAACCAGACTCTAAGCGGAGCCTCAGCACCAAGTATGAGACCACTATCTTCTAA MAGIIKKQILKHLSRTMTTRQPCIVQRSMATQRW*RCS*RS*RTPPCATTNSRPLWTWQHCTGDWRW*KCSLMHTPTS*AATLRSTPLCTWQQGMATKPWSRSSSMLAWTATTRRRWAVLCMRLLCLARPMWCKSCWLQELTST*KITMD*LP*TLFGNCLLKRASK*QH*LKIT*LEKEVQKK*IKPPHPSHLSSPVWTPYHRSLRVTWRKQ*LN*L*ILMQMLKKRVPTKLCIMPSPAIRWTAWPAGDHLTKTPRTRRLRQQE*NLLE*GLGNVHHLQQSHRPMKRKKTT*IRSIFP*QLLRFCP*DLGFMGVQPGKKTNTLMNCC*QQRQRKWCWWMEKQKTTGGAAAAGARTLRRGRTGRSQSSSQASSTAPPRCARWGRTLSSCSVPLARAIQTGPPSRAPATRPACSWRRRVCMLLEPPSPVPWTRAREWATSQACPPPTAARTLKL*LTQHLRTLVVLRKETGVGPGAERLPLANPKLNSNSAAACPSLTLIS*PAHPQRTLPWGVGVSPYPTAALGRKG*RSHPPSPRSGMRLRKS*VLLEKGLTFLRNGRRSQVYGRWSRVSGSGWSRLGCSSMRASCF*MALTMSTSWGLM*WKSRTCGTSASATHSTGGSCSRRHAPYPR*RLWVMTGTAPLACPPGWTPWGCRTTSIPSCQVVTAPLTP*RTSGS*SSSMS*RSSCSAIASASSPPSQTDRTRSRPRSPPDSPS*GAKICSPRRHPH*VRMIPALGGRQICCCLQGTQAGGAMTVSMTLRHPPERSASGSRRSTVRPS*PCGPRAWQPPTPQCRVGNTSQRNSSSSPVVMKPIIWAPC*SKICEGQNPRKTPVPRCGNLRST*RRSPPSSCPSHTKVSSSSMPPTRTSLQSTRSGTFPVRPRTRRTSVPLPTSPRTCRPATTIAMCSAPWM*T*PTRSS*RWGRPSKWPISWPCRPRSPGRRAPLQLR*LKQNLPNRCLSLGSA*GNPQCRCPPIVAVVTVTPAPPTVLPTYRCHLLVLESSWNHLIWTKMPNPMPVSPGLWTPNQTLSGASAPSMRPLSS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32063 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 4858 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 33 14 6.51 ONLY_REF_SPLICE YES_LDAS 0.1698 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32065 FOCAD::ASIC2 ENSG00000188352.13::ENSG00000108684.15 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1786 FALSE NA FALSE NA FOCAD ENSG00000188352.13 protein_coding + + chr9:20658309-20995955:+ chr9:20658826:+ chr9:20658308-20995954:+ chr9:20658825:+ ASIC2 ENSG00000108684.15 protein_coding - - chr17:33013087-34174964:- chr17:33088990:- chr17:31340105-32501983:- chr17:31416008:- chr9:20659801 chr17:33106613 NA NA chr9:20659800 chr17:31433631 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTERCHROMOSOMAL[chr9--chr17] 10 4 10 4 ONLY_REF_SPLICE YES_LDAS 0.1159 GT 1.7465 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32067 ASCC1::DNAJB12 ENSG00000138303.19::ENSG00000148719.16 NCIH838 SRR8615976 SRR8670706 LUNG carcinoma (non_small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1787 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72196811:- chr10:73855790-73976892:- chr10:73956569:- DNAJB12 ENSG00000148719.16 protein_coding - - chr10:72332830-72355149:- chr10:72345127:- chr10:74092588-74114907:- chr10:74104885:- chr10:72177924,chr10:72177928 chr10:72349705,chr10:72349706 NA NA chr10:73937682,chr10:73937686 chr10:74109463,chr10:74109464 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KH_1|99-148|2.2e-11^TraC_F_IV|155-183|0.54^AKAP7_NLS|161-350|1.8e-56^DUF2299|185-240|2.2e-05^HVSL|193-315|3.6e-06^TraC_F_IV|265-319|8e-05 DUF1977|301-400|2.2e-32 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.12Mb] 9 6 9 6 ONLY_REF_SPLICE YES_LDAS 0.1242 GT 1.9656 AG 1.8892 ENST00000394915.7 1-573 ENST00000338820.7 236-1230 chr10|-|[2]72196811-72196989[1]|[0]72203427-72203524[2]|[1]72204422-72204505[2]|[1]72210732-72210831[1]|[0]72213187-72213298[0]<==>chr10|-|[2]72335810-72335931[1]|[0]72336524-72336696[2]|[1]72338202-72338311[0]|[2]72340789-72340868[1]|[0]72340985-72341170[1]|[0]72343366-72343511[2]|[1]72344950-72345127[1] atggaagttctgcgtccacagcttataagaattgatggccggaattacaggaagaatccagtccaagaacagacctatcaacatgaagaagatgaagaggacttctatcaaggctccatggagtgtgctgatgagccctgtgatgcctacgaggtggagcagaccccacaaggattccggtctactttgagggcccccagcttgctctataatctcattcacttgaacacatcaaacgactgtgggttccagaagataactttggattgtcagaatatttatacttggaagtccaggcatatagttggaaagagaggggacactaggaagaaaatagaaatggagaccaaaacttctattagcattcctaaacctggacaagacggggaaattgtaatcactggccagcatcgaaatggtgtaatttcagcccgaacacggattgatgttcttttggacacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaagttgaggttcaggaaggattcctgagattccaggaggaagtactggcgaagtgctccatgCCCTGATTGAGTCCCTCAACCAGAAACCACAGACTGCCGGTGACCAACCCCCACCCACAGACACAACCCATGCCACCCACAGGAAAGCAGGTGGGACCGATGCCCCCTCGGCCAACGGTGAAGCTGGAGGAGAGAGCACCAAAGGCTACACTGCAGAACAGGTTGCAGCTGTGAAAAGGGTCAAGCAATGTAAAGATTACTATGAGATCCTGGGGGTGAGCAGAGGGGCCTCGGATGAGGACCTGAAGAAGGCCTACCGCAGACTGGCCCTCAAATTCCACCCAGACAAGAACCACGCACCTGGTGCCACTGAAGCCTTCAAAGCCATTGGCACAGCATATGCGGTACTCAGCAACCCGGAGAAGAGGAAGCAGTATGACCAGTTCGGCGATGACAAGAGCCAGGCGGCCCGGCACGGCCATGGGCATGGGGATTTCCACCGTGGCTTTGAGGCCGACATCTCCCCTGAAGACCTCTTCAACATGTTCTTTGGCGGCGGCTTCCCTTCTAGTAACGTCCACGTCTACAGCAACGGCCGCATGCGCTATACCTACCAGCAAAGGCAGGACCGCAGGGACAACCAGGGTGATGGCGGGCTAGGGGTGTTTGTGCAGCTGATGCCTATCCTCATCCTGATTCTCGTGTCAGCTCTCAGCCAGCTCATGGTCTCCAGTCCACCCTACAGTCTGAGTCCAAGACCGTCCGTGGGCCACATCCACAGGCGAGTCACTGACCACCTGGGTGTCGTCTACTATGTGGGAGACACTTTCTCCGAAGAGTACACAGGCTCCAGCCTCAAAACAGTCGAGCGGAATGTGGAAGATGATTATATCGCCAACCTCCGGAACAACTGCTGGAAGGAGAAGCAGCAGAAGGAAGGCTTGCTGTACCGGGCACGCTACTTTGGCGACACAGATATGTACCACAGAGCACAGAAGATGGGCACCCCCAGCTGCAGCCGACTGTCAGAGGTGCAGGCCTCCCTGCATGGATAG MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMP*LSPSTRNHRLPVTNPHPQTQPMPPTGKQVGPMPPRPTVKLEERAPKATLQNRLQL*KGSSNVKITMRSWG*AEGPRMRT*RRPTADWPSNSTQTRTTHLVPLKPSKPLAQHMRYSATRRRGSSMTSSAMTRARRPGTAMGMGISTVALRPTSPLKTSSTCSLAAASLLVTSTSTATAACAIPTSKGRTAGTTRVMAG*GCLCS*CLSSS*FSCQLSASSWSPVHPTV*VQDRPWATSTGESLTTWVSSTMWETLSPKSTQAPASKQSSGMWKMIISPTSGTTAGRRSSRRKACCTGHATLATQICTTEHRRWAPPAAADCQRCRPPCMD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Adrenal no_match TRUE Pheochromocytoma and Paraganglioma ADRENAL_GLAND no_match 73912627 FALSE 74095689 FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32074 CLTCL1::HIRA ENSG00000070371.16::ENSG00000100084.14 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1790 TRUE 3313 TRUE 1251 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19275623:- chr22:19166986-19279242:- chr22:19263146:- HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19331556:- chr22:19318221-19434973:- chr22:19319079:- chr22:19263920,chr22:19263923 chr22:19339707,chr22:19339707 NA NA chr22:19251443,chr22:19251446 chr22:19327230,chr22:19327230 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Clathrin_propel|19-55|2.1e-11^Clathrin_propel|60-85|1.5e-05^Clathrin_propel|109-115|0.23 none ["CLTCL1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.04Mb];LOCAL_REARRANGEMENT:-:[38982] 31 25 31 20.33 ONLY_REF_SPLICE YES_LDAS 0.5852 GT 1.9329 AG 1.7232 ENST00000449918.1 1-250 ENST00000263208.5 2938-3054 chr22|-|[0]19275623-19275830[0]|[2]19291600-19291641[0]<==>chr22|-|[2]19331440-19331556[0] atggcgcagatcctccctgttcgctttcaggagcacttccagctccaaaaccttggaattaatccagctaacattggattcagcacactgaccatggaatctgacaagttcatatgtatccgagagaaagttggtgagcaggcacaggtcacgatcattgacatgagtgacccaatggctccgatccgacggcctatctctgcagagagtgccatcatgaatccagcctctaaggtgatagctctgaaagGGTCTGCGGAAGAGGGAGCTGCTGAAGGAGCTGCTACCAGTCATCGGGCAGAACCTCCGATTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTGAGGGACAAGTAG MAQILPVRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAESAIMNPASKVIALKGSAEEGAAEGAATSHRAEPPIPAPLHRVSGTARHPEGQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32087 CLTCL1::HIRA ENSG00000070371.16::ENSG00000100084.14 NCIH889 SRR8615977 SRR8670704 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3313 TRUE 1251 CLTCL1 ENSG00000070371.16 protein_coding - - chr22:19179473-19291719:- chr22:19275639:- chr22:19166986-19279242:- chr22:19263162:- HIRA ENSG00000100084.14 protein_coding - - chr22:19330698-19447450:- chr22:19331556:- chr22:19318221-19434973:- chr22:19319079:- chr22:19263920,chr22:19263923 chr22:19339707,chr22:19339707 NA NA chr22:19251443,chr22:19251446 chr22:19327230,chr22:19327230 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-55|2.1e-11^Clathrin_propel|60-85|1.5e-05^Clathrin_propel|109-115|0.23 none ["CLTCL1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.04Mb];LOCAL_REARRANGEMENT:-:[38982] 10 21 10 4.67 INCL_NON_REF_SPLICE YES_LDAS 0.1672 GT 1.9086 AG 1.7232 ENST00000449918.1 1-234 ENST00000263208.5 2938-3054 chr22|-|[2]19275639-19275830[0]|[2]19291600-19291641[0]<==>chr22|-|[2]19331440-19331556[0] atggcgcagatcctccctgttcgctttcaggagcacttccagctccaaaaccttggaattaatccagctaacattggattcagcacactgaccatggaatctgacaagttcatatgtatccgagagaaagttggtgagcaggcacaggtcacgatcattgacatgagtgacccaatggctccgatccgacggcctatctctgcagagagtgccatcatgaatccagcctctaagGGTCTGCGGAAGAGGGAGCTGCTGAAGGAGCTGCTACCAGTCATCGGGCAGAACCTCCGATTCCAGCGCCTCTTCACCGAGTGTCAGGAACAGCTCGACATCCTGAGGGACAAGTAG MAQILPVRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAESAIMNPASKGLRKRELLKELLPVIGQNLRFQRLFTECQEQLDILRDK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide-like 1 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32093 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1793 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406846:- chr8:129417515-129576925:- chr8:129419092:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019"];INTRACHROMOSOMAL[chr8:0.30Mb] 489 826 489 645.15 ONLY_REF_SPLICE YES_LDAS 14.3853 GT 1.8892 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32094 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1794 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128406633:- chr8:129417515-129576925:- chr8:129418879:- chr8:128108296,chr8:128174468,chr8:128106912,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836 chr8:128477739,chr8:128422158,chr8:128468541,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482 NA NA chr8:129120542,chr8:129186714,chr8:129119158,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082 chr8:129489985,chr8:129434404,chr8:129480787,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019"];INTRACHROMOSOMAL[chr8:0.30Mb] 369 522 369 165.56 ONLY_REF_SPLICE YES_LDAS 6.7802 GT 1.8892 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32095 SRSF7::SOS1 ENSG00000115875.19::ENSG00000115904.15 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1797 FALSE NA FALSE NA SRSF7 ENSG00000115875.19 protein_coding - - chr2:38743599-38751494:- chr2:38749529:- chr2:38970741-38978636:- chr2:38976671:- SOS1 ENSG00000115904.15 protein_coding - - chr2:38962206-39124345:- chr2:38997425:- chr2:39189347-39351486:- chr2:39224566:- chr2:38748742,chr2:38748745,chr2:38748747 chr2:39001385,chr2:39001385,chr2:39001385 NA NA chr2:38975884,chr2:38975887,chr2:38975889 chr2:39228526,chr2:39228526,chr2:39228526 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_1|13-77|7.4e-21^RRM_5|30-82|3.9e-07^zf-CCHC_3|103-125|9.1e-07^zf-CCHC|105-119|2.5e-07^zf-CCHC_3|169-177|3^zf-CCHC_3|189-196|3.1 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.23Mb] 215 157 215 157 ONLY_REF_SPLICE YES_LDAS 4.7184 GT 1.4295 AG 1.7819 ENST00000313117.11 1-386 ENST00000402219.8 2792-4002 chr2|-|[1]38749529-38749705[2]|[1]38750014-38750194[1]|[0]38751229-38751256[0]<==>chr2|-|[2]38985824-38986315[0]|[2]38987473-38987591[1]|[0]38989270-38989314[1]|[0]38995123-38995387[0]|[2]38996922-38997038[0]|[2]38997253-38997425[1] atgtcgcgttacgggcggtacggaggagaaaccaaggtgtatgttggtaacctgggaactggcgctggcaaaggagagttagaaagggctttcagttattatggtcctttaagaactgtatggattgcgagaaatcctccaggatttgcctttgtggaattcgaagatcctagagatgcagaagatgcagtacgaggactggatggaaaggtgatttgtggctcccgagtgagggttgaactatcgacaggcatgcctcggagatcacgttttgatagaccacctgcccgacgtccctttgatccaaatgatagatgctatgagtgtggcgaaaagggacattatgcttatgattgtcatcgttacagccggcgaagaagaagcagGAATTTATCTCACTAATATCTTGAAAACAGAAGAAGGCAACCCTGAGGTCCTAAAAAGACATGGAAAAGAGCTTATAAACTTTAGCAAAAGGAGGAAAGTAGCAGAAATAACAGGAGAGATCCAGCAGTACCAAAATCAGCCTTACTGTTTACGAGTAGAATCAGATATCAAAAGGTTCTTTGAAAACTTGAATCCGATGGGAAATAGCATGGAGAAGGAATTTACAGATTATCTTTTCAACAAATCCCTAGAAATAGAACCACGAAACCCTAAGCCTCTCCCAAGATTTCCAAAAAAATATAGCTATCCCCTAAAATCTCCTGGTGTTCGTCCATCAAACCCAAGACCAGGTACCATGAGGCATCCCACACCTCTGCAGCAGGAGCCAAGGAAAATTAGTTATAGTAGGATCCCTGAAAGTGAAACAGAAAGTACAGCATCTGCACCAAATTCTCCAAGAACACCGTTAACACCTCCGCCTGCTTCTGGTGCTTCCAGTACCACAGATGTTTGCAGTGTATTTGATTCCGATCATTCGAGCCCTTTTCACTCAAGCAATGATACCGTCTTTATCCAAGTTACTCTGCCCCATGGCCCAAGATCTGCTTCTGTATCATCTATAAGTTTAACCAAAGGCACTGATGAAGTGCCTGTCCCTCCTCCTGTTCCTCCACGAAGACGACCAGAATCTGCCCCAGCAGAATCTTCACCATCTAAGATTATGTCTAAGCATTTGGACAGTCCCCCAGCCATTCCTCCTAGGCAACCCACATCAAAAGCCTATTCACCACGATATTCAATATCAGACCGGACCTCTATCTCAGACCCTCCTGAAAGCCCTCCCTTATTACCACCACGAGAACCTGTGAGGACACCTGATGTTTTCTCAAGCTCACCACTACATCTCCAACCTCCCCCTTTGGGCAAAAAAAGTGACCATGGCAATGCCTTCTTCCCAAACAGCCCTTCCCCCTTTACACCACCTCCTCCTCAAACACCTTCTCCTCACGGCACAAGAAGGCATCTGCCATCACCACCATTGACACAAGAAGTGGACCTTCATTCCATTGCTGGGCCGCCTGTTCCTCCACGACAAAGCACTTCTCAACATATCCCTAAACTCCCTCCAAAAACTTACAAAAGGGAGCACACACACCCATCCATGCACAGAGATGGACCACCACTGTTGGAGAATGCCCATTCTTCCTGA MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSRNLSH*YLENRRRQP*GPKKTWKRAYKL*QKEESSRNNRRDPAVPKSALLFTSRIRYQKVL*KLESDGK*HGEGIYRLSFQQIPRNRTTKP*ASPKISKKI*LSPKISWCSSIKPKTRYHEASHTSAAGAKEN*L**DP*K*NRKYSICTKFSKNTVNTSACFWCFQYHRCLQCI*FRSFEPFSLKQ*YRLYPSYSAPWPKICFCIIYKFNQRH**SACPSSCSSTKTTRICPSRIFTI*DYV*AFGQSPSHSS*ATHIKSLFTTIFNIRPDLYLRPS*KPSLITTTRTCEDT*CFLKLTTTSPTSPFGQKK*PWQCLLPKQPFPLYTTSSSNTFSSRHKKASAITTIDTRSGPSFHCWAACSSTTKHFSTYP*TPSKNLQKGAHTPIHAQRWTTTVGECPFFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Ras/Rac guanine nucleotide exchange factor 1 1 Yes lung adenocarcinoma, follicular thyroid adenoma epithelial, other oncogene, fusion missense, translocation 32096 PVT1::LINC00824 ENSG00000249859.14::ENSG00000254275.6 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1795 TRUE 3337 TRUE 1254 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:127880361,chr8:127880355,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127911836,chr8:127803722,chr8:127803893,chr8:128108296,chr8:127851911,chr8:128106912,chr8:127809647,chr8:127851917 chr8:128477174,chr8:128477168,chr8:128430460,chr8:128430470,chr8:128430442,chr8:128430482,chr8:128558938,chr8:128559179,chr8:128477739,chr8:128467723,chr8:128468541,chr8:128546223,chr8:128467717 NA NA chr8:128892607,chr8:128892601,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128924082,chr8:128815968,chr8:128816139,chr8:129120542,chr8:128864157,chr8:129119158,chr8:128821893,chr8:128864163 chr8:129489420,chr8:129489414,chr8:129442706,chr8:129442716,chr8:129442688,chr8:129442728,chr8:129571184,chr8:129571425,chr8:129489985,chr8:129479969,chr8:129480787,chr8:129558469,chr8:129479963 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019"];INTRACHROMOSOMAL[chr8:0.30Mb] 209 295 209 251.29 ONLY_REF_SPLICE YES_LDAS 5.8382 GT 1.8295 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32098 SRGAP1::MSRB3 ENSG00000196935.10::ENSG00000174099.12 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SRGAP1 ENSG00000196935.10 protein_coding + + chr12:63843761-64162217:+ chr12:63990072:+ chr12:64237541-64555997:+ chr12:64383852:+ MSRB3 ENSG00000174099.12 protein_coding + + chr12:65278643-65491430:+ chr12:65308529:+ chr12:65672423-65885210:+ chr12:65702309:+ chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044,chr12:64016044 chr12:65296356,chr12:65296351,chr12:65296408,chr12:65296369,chr12:65296364 NA NA chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824,chr12:64409824 chr12:65690136,chr12:65690131,chr12:65690188,chr12:65690149,chr12:65690144 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RhoGAP|21-55|2.3^KIP1|26-77|0.017^FCH|33-115|5.5e-18^KIP1|115-163|0.015^RhoGAP|127-166|2.6^RhoGAP|227-266|0.35^FlaC_arch|360-393|0.00016 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.12Mb] 31 29 31 29 ONLY_REF_SPLICE YES_LDAS 0.761 GT 1.5301 AG 1.4295 ENST00000355086.8 1-426 ENST00000541897.5 98-135 chr12|+|[0]63844817-63844883[0]|[1]63983947-63984142[1]|[2]63989910-63990072[2]<==>chr12|+|[1]65308529-65308566[2] atgtccaccccgagccgattcaagaaggacaaagagatcatagccgagtatgaaagtcaagtcaaagaaattcgagctcaactggtagaacaacaaaaatgcctggagcagcaaacggagatgcgagttcagcttctccaggatctgcaagatttcttccgaaaaaaagctgaaattgagacggaatattcccggaatctagagaagttagcagaaaggttcatggcaaaaacaagaagcactaaggatcatcaacaatacaagaaagaccagaacctgttgtctccagtgaactgctggtatttgctcctgaaccaagtaaggagagaaagcaaagaccatgcaaccttgagtgacatctatctgaacaatgtgattatgcggttcatgcagataagtgaggattctaccaggatgtttaaaaagCTCTTGCCCCTGTTCTTTGCTTCTCGTTTTGTTGGTGA MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKLLPLFFASRFVG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32103 PVT1::ENSG00000286034 ENSG00000249859.14::ENSG00000286034.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 1796 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ ENSG00000286034 ENSG00000286034.1 lncRNA + + chr8:128323131-128388636:+ chr8:128386011:+ chr8:129335377-129400882:+ chr8:129398257:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 14 8 14 7.05 ONLY_REF_SPLICE YES_LDAS 0.267 GT 1.8062 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32104 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1810 TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844 chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336 NA NA chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090 chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_INVERSION:+:-:[60566] 14 8 14 7.42 ONLY_REF_SPLICE YES_LDAS 0.2717 GT 1.8295 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 TRUE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32105 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1801 TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142725839:- chr4:142944313-143768585:- chr4:143646992:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["INPP4B:ArcherDX_panel","INPP4B:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr16] 14 29 14 11.31 ONLY_REF_SPLICE YES_LDAS 0.3211 GT 1.4256 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32106 CAPRIN2::TMEM117 ENSG00000110888.19::ENSG00000139173.10 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1803 FALSE NA FALSE NA CAPRIN2 ENSG00000110888.19 protein_coding - - chr12:30709552-30823302:- chr12:30728648:- chr12:30862486-30976236:- chr12:30881582:- TMEM117 ENSG00000139173.10 protein_coding + + chr12:43835967-44389762:+ chr12:44376595:+ chr12:44229770-44783545:+ chr12:44770378:+ chr12:30726395,chr12:30726397 chr12:44362657,chr12:44362655 NA NA chr12:30879329,chr12:30879331 chr12:44756440,chr12:44756438 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Caprin-1_C|45-113|0.25^Caprin-1_dimer|200-315|3.5e-40^Caprin-1_C|324-363|1.1^Caprin-1_C|432-524|2^Caprin-1_C|620-934|7.9e-152 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:13.08Mb] 12 11 12 11 ONLY_REF_SPLICE YES_LDAS 0.2917 GT 1.6402 AG 1.9899 ENST00000417045.5 1-1782 ENST00000266534.8 769-1545 chr12|-|[2]30728648-30729325[0]|[2]30730239-30730282[1]|[0]30731343-30731510[1]|[0]30733629-30733711[2]|[1]30734968-30735206[0]|[2]30741020-30741106[0]|[2]30751071-30751133[0]|[2]30753344-30753763[0]<==>chr12|+|[0]44376595-44376724[0]|[1]44388026-44388672[2] atggaagtacaagtatctcaagcatcattgggtttcgagctcacttctgtggaaaagagtttaagggagtggtctagactttccagggaagttattgcctggctgtgtccctctagtcctaattttatacttaactttcccccacctccttcagcctcatctgtttcaatggtgcaactcttttcatccccttttggttaccagtcaccttcaggccattcagaggaggaaagagaggggaatatgaagtcagccaagccccaagtgaaccacagtcagcatggggaaagccagcgggccttgagccccctgcagtctactctgagttctgctgcatctccttcccaagcgtatgagacctatattgaaaatggactcatatgccttaaacacaaaattagaaacatcgagaaaaagaagctcaaactggaggattataaggatcgcctgaaaagtggagagcatcttaatccagaccagttggaagctgtagagaaatatgaagaagtgctacataatttggaatttgccaaggagcttcaaaaaaccttttctgggttgagcctagatctactaaaagcgcaaaagaaggcccagagaagggagcacatgctaaaacttgaggctgagaagaaaaagcttcgaactatacttcaagttcagtatgtattgcagaacttgacacaggagcacgtacaaaaagacttcaaagggggtttgaatggtgcagtgtatttgccttcaaaagaacttgactacctcattaagttttcaaaactgacctgccctgaaagaaatgaaagtctgagtgttgaagaccagatggagcagtcatccttgtacttttgggaccttttggaaggtagtgagaaagcagtggtaggaacgacatacaaacacttgaaggatctactgtctaaattgctgaactcaggctattttgaaagtatcccagttcccaaaaatgccaaggaaaaggaagtaccactggaggaagaaatgctaatacaatcagagaaaaaaacacaattatcgaagactgaatctgtcaaagagtcagagtctctaatggaatttgcccagccagagatacaaccacaagagtttcttaacagacgctatatgacagaagtagattattcaaacaaacaaggcgaagagcaaccttgggaagcagattatgctagaaaaccaaatctcccaaaacgttgggatatgcttactgaaccagatggtcaagagaagaaacaggagtcctttaagtcctgggaggcttctggtaagcaccaggaggtatccaagcctgcagtttccttagaacagaggaaacaagacacctcaaaactcaggtctactctgccggaagagcagaagaagcaggagatctccaaatccaagccatctcctagccagtggaagcaagatacacctaaatccaaagcagggtatgttcaagaggaacaaaagaaacaggagacaccaaagctgtggccagttcagctgcagaaagaacaagatccaaagaagcaaactccaaagtcttggacaccttccatgcagagcgaacagaacaccaccaagtcatggaccactcccatgtgtgaagaacaggattcaaaacagccagagactccaaaatcctgggaaaacaatgttgagagtcaaaaacactctttaacatcacagtcacagatttctccaaagtcctggggagtagctacagcaagcctcataccaaatgaccagctgctgcccaggaagttgaacacagaacccaaagatGACTGGGAATTCCCACATTTCATGGGAGATGTTGATGTAAATCTCCCTGGTTTGCACACCCCTCACATGCAGTTCAAGATTCCTTTCTTCCAGAAAATCTTCAAGGAGGAATATCGTATTCACATAACAGGCAAATGGTTTAACTATGGAATTATCTTCCTCGTCTTGATTTTGGATCTTAATATGTGGAAGAACCAAATATTTTATAAACCTCATGAATATGGGCAATATATCGGCCCGGGGCAGAAGATATATACAGTGAAAGACTCAGAAAGTTTAAAAGATTTGAACAGAACCAAGCTATCCTGGGAATGGAGGTCCAATCACACTAACCCTCGGACTAATAAAACATATGTTGAGGGAGACATGTTCTTACACAGCAGGTTCATAGGAGCCAGTCTTGATGTCAAGTGTCTGGCCTTTGTTCCAAGCCTGATAGCCTTTGTGTGGTTTGGATTCTTTATTTGGTTCTTTGGACGATTTTTGAAAAATGAGCCACGCATGGAGAATCAAGACAAAACTTACACTCGCATGAAAAGAAAATCTCCATCAGAACATAGCAAAGACATGGGAATCACTCGAGAAAACACCCAGGCTTCAGTAGAAGACCCCTTGAATGACCCTTCTTTGGTTTGCATCAGGTCTGACTTCAATGAGATCGTCTACAAGTCTTCCCACCTAACCTCGGAAAACTTGAGCTCACAGTTGAACGAATCTACTAGTGCAACAGAAGCTGATCAAGACCCAACGACTTCTAAAAGTACACCTACGAACTAG MEVQVSQASLGFELTSVEKSLREWSRLSREVIAWLCPSSPNFILNFPPPPSASSVSMVQLFSSPFGYQSPSGHSEEEREGNMKSAKPQVNHSQHGESQRALSPLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLKSGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQYVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGSEKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWGVATASLIPNDQLLPRKLNTEPKDDWEFPHFMGDVDVNLPGLHTPHMQFKIPFFQKIFKEEYRIHITGKWFNYGIIFLVLILDLNMWKNQIFYKPHEYGQYIGPGQKIYTVKDSESLKDLNRTKLSWEWRSNHTNPRTNKTYVEGDMFLHSRFIGASLDVKCLAFVPSLIAFVWFGFFIWFFGRFLKNEPRMENQDKTYTRMKRKSPSEHSKDMGITRENTQASVEDPLNDPSLVCIRSDFNEIVYKSSHLTSENLSSQLNESTSATEADQDPTTSKSTPTN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32107 CUX1::CDHR3 ENSG00000257923.12::ENSG00000128536.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3349 TRUE 1263 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101816093:+ chr7:101459184-101927250:+ chr7:101459373:+ CDHR3 ENSG00000128536.16 protein_coding + + chr7:105876796-106036432:+ chr7:105911017:+ chr7:105517242-105676878:+ chr7:105551463:+ chr7:101855642,chr7:101855642 chr7:105893010,chr7:105893001 NA NA chr7:101498922,chr7:101498922 chr7:105533456,chr7:105533447 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CUX1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:3.59Mb] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.1395 GT 1.9899 AG 1.4256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 32109 PVT1::CASC11 ENSG00000249859.14::ENSG00000249375.8 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1809 TRUE 3351 TRUE 1265 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127703243:- chr8:128698588-128751233:- chr8:128715488:- chr8:128061145,chr8:128072938,chr8:128079986,chr8:128079987,chr8:128103284,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:128179844,chr8:127933159,chr8:128061096,chr8:127922047,chr8:128152808,chr8:128152811,chr8:128152816,chr8:128152819,chr8:128152826,chr8:128152832,chr8:128152838,chr8:128152840,chr8:128152843,chr8:128152847,chr8:128152860,chr8:128152869,chr8:128152872,chr8:128072934,chr8:127921812,chr8:127921812,chr8:128103285 chr8:127705229,chr8:127720696,chr8:127726663,chr8:127726978,chr8:127730890,chr8:127737297,chr8:127737300,chr8:127737302,chr8:127737303,chr8:127737308,chr8:127737317,chr8:127737321,chr8:127737326,chr8:127737283,chr8:127737335,chr8:127737336,chr8:127703667,chr8:127705963,chr8:127705963,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127716972,chr8:127720552,chr8:127705083,chr8:127705073,chr8:127730889 NA NA chr8:129073391,chr8:129085184,chr8:129092232,chr8:129092233,chr8:129115530,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:129192090,chr8:128945405,chr8:129073342,chr8:128934293,chr8:129165054,chr8:129165057,chr8:129165062,chr8:129165065,chr8:129165072,chr8:129165078,chr8:129165084,chr8:129165086,chr8:129165089,chr8:129165093,chr8:129165106,chr8:129165115,chr8:129165118,chr8:129085180,chr8:128934058,chr8:128934058,chr8:129115531 chr8:128717474,chr8:128732942,chr8:128738909,chr8:128739224,chr8:128743136,chr8:128749543,chr8:128749546,chr8:128749548,chr8:128749549,chr8:128749554,chr8:128749563,chr8:128749567,chr8:128749572,chr8:128749529,chr8:128749581,chr8:128749582,chr8:128715912,chr8:128718208,chr8:128718208,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128729218,chr8:128732798,chr8:128717328,chr8:128717318,chr8:128743135 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.06Mb];LOCAL_INVERSION:+:-:[60566] 11 20 11 19.06 ONLY_REF_SPLICE YES_LDAS 0.3813 GT 1.8892 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Cervix CERVIX no_match 127794734 FALSE 127716148 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32113 CUX1::CDHR3 ENSG00000257923.12::ENSG00000128536.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3349 TRUE 1263 CUX1 ENSG00000257923.12 protein_coding + + chr7:101815904-102283958:+ chr7:101816093:+ chr7:101459184-101927250:+ chr7:101459373:+ CDHR3 ENSG00000128536.16 protein_coding + + chr7:105876796-106036432:+ chr7:105910227:+ chr7:105517242-105676878:+ chr7:105550673:+ chr7:101855642,chr7:101855642 chr7:105893010,chr7:105893001 NA NA chr7:101498922,chr7:101498922 chr7:105533456,chr7:105533447 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CUX1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:3.59Mb] 8 1 8 1 ONLY_REF_SPLICE YES_LDAS 0.1142 GT 1.9899 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cut-like homeobox 1 1 Yes endometrial, melanoma, colorectal, AML, MDS, other tumour types epithelial,leukaemia_lymphoma,mesenchymal,other oncogene, TSG nonsense,frameshift,splice_site,missense,other,translocation FALSE NA NA NA NA NA NA NA NA NA 32118 NHS::ENSG00000233928 ENSG00000188158.17::ENSG00000233928.7 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NHS ENSG00000188158.17 protein_coding + + chrX:17375200-17735994:+ chrX:17692468:+ chrX:17393323-17754114:+ chrX:17710588:+ ENSG00000233928 ENSG00000233928.7 lncRNA + + chrX:33726337-34346527:+ chrX:34266095:+ chrX:33744454-34364644:+ chrX:34284212:+ chrX:17694946,chrX:17694945 chrX:34218889,chrX:34218885 NA NA chrX:17713066,chrX:17713065 chrX:34237006,chrX:34237002 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 10 7 8.52 ONLY_REF_SPLICE YES_LDAS 0.1969 GT 1.8892 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-4768 chrX:17425881-17425954:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32122 INPP4B::PHKB ENSG00000109452.13::ENSG00000102893.18 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1800 TRUE 3342 TRUE 1258 INPP4B ENSG00000109452.13 protein_coding - - chr4:142023160-142847432:- chr4:142721026:- chr4:142944313-143768585:- chr4:143642179:- PHKB ENSG00000102893.18 protein_coding + + chr16:47461123-47701523:+ chr16:47689041:+ chr16:47495034-47735434:+ chr16:47722952:+ chr4:142478726,chr4:142478733 chr16:47672973,chr16:47672966 NA NA chr4:143399879,chr4:143399886 chr16:47706884,chr16:47706877 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["INPP4B:ArcherDX_panel","INPP4B:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr16] 5 44 5 31.15 INCL_NON_REF_SPLICE YES_LDAS 0.4585 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32123 DMD::DCLK2 ENSG00000198947.18::ENSG00000170390.16 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1807 FALSE NA FALSE NA DMD ENSG00000198947.18 protein_coding - - chrX:31097677-33339609:- chrX:32491277:- chrX:31115794-33357726:- chrX:32509394:- DCLK2 ENSG00000170390.16 protein_coding + + chr4:150078445-150257438:+ chr4:150220703:+ chr4:150999597-151178590:+ chr4:151141855:+ chrX:32487314,chrX:32487318 chr4:150212425,chr4:150212421 NA NA chrX:32505431,chrX:32505435 chr4:151133577,chr4:151133573 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH|16-118|6.4e-23^CAMSAP_CH|36-61|0.5^CH|136-239|2.1e-25^CAMSAP_CH|155-196|5.3e-05^CCDC-167|336-384|3.1^Spectrin|340-446|3.7e-19^Spectrin|453-556|3e-16^CCDC-167|453-491|9.8^Myb_DNA-binding|529-545|1.1^Spectrin|562-664|8.2e-05^Spectrin|727-827|9.3e-10^Spectrin|832-933|5.3e-12^Spectrin|943-1045|2.8e-10^CCDC-167|944-992|0.096^CCDC-167|1031-1052|1.7^Myb_DNA-binding|1035-1058|5.2^Spectrin|1048-1153|4.5e-20^CCDC-167|1113-1139|1.4^Prp19|1131-1152|0.55^Spectrin|1161-1263|1.3e-15^Imm5_like|1170-1209|4.4^CCDC-167|1197-1245|2.5^Spectrin|1270-1367|3.8e-08^CCDC-167|1277-1322|0.076^CCDC-167|1372-1432|5.4e-06^Spectrin|1411-1453|2^EF-hand_2|1455-1518|2.5^Spectrin|1466-1567|9.1e-07^CCDC-167|1552-1595|2.8^Spectrin|1573-1675|2.7e-13^Spectrin|1679-1776|2.8e-15^CCDC-167|1706-1734|5.6^Spectrin|1799-1871|0.01^Spectrin|1877-1977|1.2e-12^CCDC-167|1887-1931|1.3^CCDC-167|1910-1970|2.7^Spectrin|2000-2097|2e-08^CCDC-167|2035-2047|6.5^Myb_DNA-binding|2067-2097|0.1^Spectrin|2105-2208|2.5e-16^CCDC-167|2199-2215|7.1^Spectrin|2213-2317|2.6e-15^Myb_DNA-binding|2284-2312|0.06^CCDC-167|2287-2340|1.1^Spectrin|2309-2341|0.13^Prp19|2313-2339|6.9^Spectrin|2328-2421|2.3e-05^Spectrin|2473-2577|3.7e-12^CCDC-167|2517-2573|2.2^Prp19|2554-2598|0.0011^Myb_DNA-binding|2555-2571|0.23^Imm5_like-PARTIAL|2580-2622~|0.00015^Spectrin-PARTIAL|2583-2622~|3.3e-14 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chrX--chr4] 4 6 4 4 ONLY_REF_SPLICE YES_LDAS 0.1014 GT 1.4295 AG 1.8892 ENST00000357033.9 1-2622 ENST00000302176.8 1108-2352 chrX|-|[2]32491277-32491518[1]|[0]32501755-32501842[0]|[2]32518008-32518131[2]|[1]32545159-32545334[0]|[2]32565702-32565881[0]|[2]32573530-32573637[0]|[2]32573745-32573846[0]|[2]32595757-32595876[0]|[2]32614303-32614453[2]|[1]32644132-32644313[0]|[2]32644964-32645152[0]|[2]32697870-32697998[0]|[2]32699112-32699293[1]|[0]32809493-32809611[2]|[1]32816468-32816640[0]|[2]32823295-32823387[0]|[2]32844783-32844860[0]|[2]32849728-32849820[0]|[2]33020139-33020200[1]|[0]33211282-33211312[0]<==>chr4|+|[0]150220703-150220778[0]|[1]150221677-150221785[1]|[2]150224501-150224558[2]|[0]150232337-150232456[2]|[0]150232682-150232828[2]|[0]150239742-150239875[1]|[2]150240399-150240476[1]|[2]150247603-150247699[2]|[0]150248305-150248385[2]|[0]150249568-150249684[2]|[0]150256020-150256247[2] atgctttggtgggaagaagtagaggactgttatgaaagagaagatgttcaaaagaaaacattcacaaaatgggtaaatgcacaattttctaagtttgggaagcagcatattgagaacctcttcagtgacctacaggatgggaggcgcctcctagacctcctcgaaggcctgacagggcaaaaactgccaaaagaaaaaggatccacaagagttcatgccctgaacaatgtcaacaaggcactgcgggttttgcagaacaataatgttgatttagtgaatattggaagtactgacatcgtagatggaaatcataaactgactcttggtttgatttggaatataatcctccactggcaggtcaaaaatgtaatgaaaaatatcatggctggattgcaacaaaccaacagtgaaaagattctcctgagctgggtccgacaatcaactcgtaattatccacaggttaatgtaatcaacttcaccaccagctggtctgatggcctggctttgaatgctctcatccatagtcataggccagacctatttgactggaatagtgtggtttgccagcagtcagccacacaacgactggaacatgcattcaacatcgccagatatcaattaggcatagagaaactactcgatcctgaagatgttgataccacctatccagataagaagtccatcttaatgtacatcacatcactcttccaagttttgcctcaacaagtgagcattgaagccatccaggaagtggaaatgttgccaaggccacctaaagtgactaaagaagaacattttcagttacatcatcaaatgcactattctcaacagatcacggtcagtctagcacagggatatgagagaacttcttcccctaagcctcgattcaagagctatgcctacacacaggctgcttatgtcaccacctctgaccctacacggagcccatttccttcacagcatttggaagctcctgaagacaagtcatttggcagttcattgatggagagtgaagtaaacctggaccgttatcaaacagctttagaagaagtattatcgtggcttctttctgctgaggacacattgcaagcacaaggagagatttctaatgatgtggaagtggtgaaagaccagtttcatactcatgaggggtacatgatggatttgacagcccatcagggccgggttggtaatattctacaattgggaagtaagctgattggaacaggaaaattatcagaagatgaagaaactgaagtacaagagcagatgaatctcctaaattcaagatgggaatgcctcagggtagctagcatggaaaaacaaagcaatttacatagagttttaatggatctccagaatcagaaactgaaagagttgaatgactggctaacaaaaacagaagaaagaacaaggaaaatggaggaagagcctcttggacctgatcttgaagacctaaaacgccaagtacaacaacataaggtgcttcaagaagatctagaacaagaacaagtcagggtcaattctctcactcacatggtggtggtagttgatgaatctagtggagatcacgcaactgctgctttggaagaacaacttaaggtattgggagatcgatgggcaaacatctgtagatggacagaagaccgctgggttcttttacaagacatccttctcaaatggcaacgtcttactgaagaacagtgcctttttagtgcatggctttcagaaaaagaagatgcagtgaacaagattcacacaactggctttaaagatcaaaatgaaatgttatcaagtcttcaaaaactggccgttttaaaagcggatctagaaaagaaaaagcaatccatgggcaaactgtattcactcaaacaagatcttctttcaacactgaagaataagtcagtgacccagaagacggaagcatggctggataactttgcccggtgttgggataatttagtccaaaaacttgaaaagagtacagcacagatttcacaggctgtcaccaccactcagccatcactaacacagacaactgtaatggaaacagtaactacggtgaccacaagggaacagatcctggtaaagcatgctcaagaggaacttccaccaccacctccccaaaagaagaggcagattactgtggattctgaaattaggaaaaggttggatgttgatataactgaacttcacagctggattactcgctcagaagctgtgttgcagagtcctgaatttgcaatctttcggaaggaaggcaacttctcagacttaaaagaaaaagtcaatgccatagagcgagaaaaagctgagaagttcagaaaactgcaagatgccagcagatcagctcaggccctggtggaacagatggtgaatgagggtgttaatgcagatagcatcaaacaagcctcagaacaactgaacagccggtggatcgaattctgccagttgctaagtgagagacttaactggctggagtatcagaacaacatcatcgctttctataatcagctacaacaattggagcagatgacaactactgctgaaaactggttgaaaatccaacccaccaccccatcagagccaacagcaattaaaagtcagttaaaaatttgtaagCAGATTTCTGCTCATGGCAGATCTTCTTCCAATGTAAACGGTGGACCTGAGCTTGACCGTTGCATAAGTCCTGAAGGTGTGAATGGAAACAGATGCTCTGAATCATCAACTCTTCTTGAGAAATACAAAATTGGAAAGGTCATTGGTGATGGCAATTTTGCAGTAGTCAAAGAGTGTATAGACAGGTCCACTGGAAAGGAGTTTGCCCTAAAGATTATAGACAAAGCCAAATGTTGTGGAAAGGAACACCTGATTGAGAATGAAGTGTCAATACTGCGCCGAGTGAAACATCCCAATATCATTATGCTGGTCGAGGAGATGGAAACAGCAACTGAGCTCTTTCTGGTGATGGAATTGGTCAAAGGTGGAGATCTCTTTGATGCAATTACTTCGTCGACCAAGTACACTGAGAGAGATGGCAGTGCCATGGTGTACAACTTAGCCAATGCCCTCAGGTATCTCCATGGCCTCAGCATCGTGCACAGAGACATCAAACCAGAGAATCTCTTGGTGTGTGAATATCCTGATGGAACCAAGTCTTTGAAACTGGGAGACTTTGGGCTTGCGACTGTGGTAGAAGGCCCTTTATACACAGTCTGTGGCACACCCACTTATGTGGCTCCAGAAATCATTGCTGAAACTGGCTATGGCCTGAAGGTGGACATTTGGGCAGCTGGTGTGATCACATACATACTTCTCTGTGGATTCCCACCATTCCGAAGTGAGAACAATCTCCAGGAAGATCTCTTCGACCAGATCTTGGCTGGGAAGCTGGAGTTTCCGGCCCCCTACTGGGATAACATCACGGACTCTGCCAAGGAATTAATCAGTCAAATGCTTCAGGTAAATGTTGAAGCTCGGTGTACCGCGGGACAAATCCTGAGTCACCCCTGGGTGTCAGATGATGCCTCCCAGGAGAATAACATGCAAGCTGAGGTGACAGGTAAACTAAAACAGCACTTTAATAATGCGCTCCCCAAACAGAACAGCACTACCACCGGGGTCTCCGTCATCATGAACACGGCTCTAGATAAGGAGGGGCAGATTTTCTGCAGCAAGCACTGTCAAGACAGCGGCAGGCCTGGGATGGAGCCCATCTCTCCAGTTCCTCCCTCAGTGGAGGAGATCCCTGTGCCTGGGGAAGCAGTCCCGGCCCCCACCCCTCCGGAATCTCCCACCCCCCACCCTCCTCCCGCTGCCCCGGGTGGTGAGCGGGCAGGAACCTGGCGCCGCCACCGAGACTGA MLWWEEVEDCYEREDVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDIVDGNHKLTLGLIWNIILHWQVKNVMKNIMAGLQQTNSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSVVCQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVLPQQVSIEAIQEVEMLPRPPKVTKEEHFQLHHQMHYSQQITVSLAQGYERTSSPKPRFKSYAYTQAAYVTTSDPTRSPFPSQHLEAPEDKSFGSSLMESEVNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQNQKLKELNDWLTKTEERTRKMEEEPLGPDLEDLKRQVQQHKVLQEDLEQEQVRVNSLTHMVVVVDESSGDHATAALEEQLKVLGDRWANICRWTEDRWVLLQDILLKWQRLTEEQCLFSAWLSEKEDAVNKIHTTGFKDQNEMLSSLQKLAVLKADLEKKKQSMGKLYSLKQDLLSTLKNKSVTQKTEAWLDNFARCWDNLVQKLEKSTAQISQAVTTTQPSLTQTTVMETVTTVTTREQILVKHAQEELPPPPPQKKRQITVDSEIRKRLDVDITELHSWITRSEAVLQSPEFAIFRKEGNFSDLKEKVNAIEREKAEKFRKLQDASRSAQALVEQMVNEGVNADSIKQASEQLNSRWIEFCQLLSERLNWLEYQNNIIAFYNQLQQLEQMTTTAENWLKIQPTTPSEPTAIKSQLKICKQISAHGRSSSNVNGGPELDRCISPEGVNGNRCSESSTLLEKYKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDKAKCCGKEHLIENEVSILRRVKHPNIIMLVEEMETATELFLVMELVKGGDLFDAITSSTKYTERDGSAMVYNLANALRYLHGLSIVHRDIKPENLLVCEYPDGTKSLKLGDFGLATVVEGPLYTVCGTPTYVAPEIIAETGYGLKVDIWAAGVITYILLCGFPPFRSENNLQEDLFDQILAGKLEFPAPYWDNITDSAKELISQMLQVNVEARCTAGQILSHPWVSDDASQENNMQAEVTGKLKQHFNNALPKQNSTTTGVSVIMNTALDKEGQIFCSKHCQDSGRPGMEPISPVPPSVEEIPVPGEAVPAPTPPESPTPHPPPAAPGGERAGTWRRHRD* FALSE TRUE hsa-mir-3915,hsa-mir-548f-5 chrX:32583656-32583752:-,chrX:32641474-32641559:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase DCLK2 CAMK DCAMKL Q8N568 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32124 PVT1::ENSG00000286010 ENSG00000249859.14::ENSG00000286010.1 NCIH1792 SRR8615980 SRR8652043 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 1804 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127816884:+ chr8:128806772-129199347:+ chr8:128829130:+ ENSG00000286010 ENSG00000286010.1 lncRNA - - chr8:127663280-127670990:- chr8:127668823:- chr8:128675525-128683235:- chr8:128681068:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"] 3 16 3 7.97 ONLY_REF_SPLICE YES_LDAS 0.1392 GT 1.8892 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32126 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1811 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 282 372 282 225.12 ONLY_REF_SPLICE YES_LDAS 6.8438 GT 1.8295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32128 SUPT6H::MYH10 ENSG00000109111.15::ENSG00000133026.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1819 FALSE NA FALSE NA SUPT6H ENSG00000109111.15 protein_coding + + chr17:28662198-28702679:+ chr17:28662342:+ chr17:26989216-27029697:+ chr17:26989360:+ MYH10 ENSG00000133026.14 protein_coding - - chr17:8474207-8631376:- chr17:8554018:- chr17:8377525-8534694:- chr17:8457336:- chr17:28671475 chr17:8563788 NA NA chr17:26998493 chr17:8467106 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:20.03Mb] 113 28 113 28 ONLY_REF_SPLICE YES_LDAS 1.9029 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32132 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1812 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 50 391 50 58.28 ONLY_REF_SPLICE YES_LDAS 1.4613 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32133 LTBP2::CASC8 ENSG00000119681.12::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA LTBP2 ENSG00000119681.12 protein_coding - - chr14:74498183-74612378:- chr14:74603635:- chr14:74964886-75079081:- chr14:75070338:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["LTBP2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr8] 46 24 46 24 ONLY_REF_SPLICE YES_LDAS 0.9447 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32134 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1821 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73272495:+ chr14:73704205-73741348:+ chr14:73739203:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.11Mb] 37 44 35.82 17.71 ONLY_REF_SPLICE YES_LDAS 0.7224 GT 1.8256 AG 1.2419 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32136 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1814 TRUE 3353 TRUE 1266 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127797179 chr8:127311889 NA NA chr8:128809425 chr8:128324134 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 33 401 33 60.12 ONLY_REF_SPLICE YES_LDAS 1.2566 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32138 SLC22A17::CASC11 ENSG00000092096.19::ENSG00000249375.8 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1823 TRUE 3358 TRUE 1268 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23346756:- chr14:23815523-23822121:- chr14:23815965:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127730922:- chr8:128698588-128751233:- chr8:128743168:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr8] 32 27 32 25.6 INCL_NON_REF_SPLICE YES_LDAS 0.7774 GT 1.8892 AG 1.3383 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32140 DACH2::HDAC8 ENSG00000126733.22::ENSG00000147099.21 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DACH2 ENSG00000126733.22 protein_coding + + chrX:86148451-86832604:+ chrX:86149108:+ chrX:85403455-86087607:+ chrX:85404112:+ HDAC8 ENSG00000147099.21 protein_coding - - chrX:72329516-72573101:- chrX:72351838:- chrX:71549366-71792951:- chrX:71571688:- chrX:86220454 chrX:72459171 NA NA chrX:85475457 chrX:71679021 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ski_Sno|62-161|5.8e-45 none ["DACH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:13.58Mb] 27 23 27 23 ONLY_REF_SPLICE YES_LDAS 0.6748 GT 1.9656 AG 1.7465 ENST00000506327.6 1-488 ENST00000648276.1 390-504 chrX|+|[0]86148621-86149108[1]<==>chrX|-|[2]72330068-72330076[0]|[2]72351733-72351838[2] atggctgtctccgcatctccagtgatctctgcaacttccagcggcgccggcgtcccggggggcttattccgggccgaacccctgtactcgactcccagagagccccctcgtcttactcctaatatgatcaatagtttcgtggttaataaccacagcaacagtgccggaggcggcggcaggggcaacaccaacaccaacgagtgccgcatggtcgacatgcacgggatgaaggtggcttcgttcctgatggacggccaggaactgatctgcctgccgcaagtctttgatctttttctcaagcacctggtgggaggcttgcacactgtgtacaccaagctgaagagactggatatatcccccgtggtgtgtactgttgagcaggtccggatcctccgcgggctgggggccatccagcccggggtaaaccgctgcaaactcatcaccaggaaagacttcgaaactttgttcaccgattgcaccaatgccagTTTTTCACAGCATATGGTCCTGATTATGTGCTGGAAATCACGCCAAGCTGCCGGCCAGACCGCAATGAGCCCCACCGAATCCAACAAATCCTCAACTACATCAAAGGGAATCTGA MAVSASPVISATSSGAGVPGGLFRAEPLYSTPREPPRLTPNMINSFVVNNHSNSAGGGGRGNTNTNECRMVDMHGMKVASFLMDGQELICLPQVFDLFLKHLVGGLHTVYTKLKRLDISPVVCTVEQVRILRGLGAIQPGVNRCKLITRKDFETLFTDCTNASFSQHMVLIMCWKSRQAAGQTAMSPTESNKSSTTSKGI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32141 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1820 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73268510:+ chr14:73704205-73741348:+ chr14:73735218:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.11Mb] 27 63 27 38.45 INCL_NON_REF_SPLICE YES_LDAS 0.8833 GT 1.8256 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32143 TPD52L1::PARVA ENSG00000111907.21::ENSG00000197702.14 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1825 FALSE NA FALSE NA TPD52L1 ENSG00000111907.21 protein_coding + + chr6:125119049-125264407:+ chr6:125153970:+ chr6:125440195-125585553:+ chr6:125475116:+ PARVA ENSG00000197702.14 protein_coding + + chr11:12377563-12535356:+ chr11:12496458:+ chr11:12399110-12556903:+ chr11:12518005:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr11] 24 33 24 33 ONLY_REF_SPLICE YES_LDAS 0.7692 GT 1.5656 AG 1.7056 ENST00000368388.6 1-19 ENST00000334956.15 401-1119 chr6|+|[0]125153952-125153970[0]<==>chr11|+|[1]12496458-12496598[0]|[1]12504314-12504429[2]|[0]12508584-12508642[1]|[2]12511514-12511533[0]|[1]12513299-12513360[2]|[0]12513997-12514065[2]|[0]12517610-12517711[2]|[0]12518445-12518517[0]|[1]12527849-12527925[2] atggaggcgcaggcacaagAGAAACTGGAGAGTGAGAAGCTAAATGTGGCTGAGGTCACCCAGTCAGAGATTGCTCAGAAGCAAAAACTGCAGACTGTCCTGGAGAAGATCAATGAAACCCTGAAACTTCCTCCCAGGAGCATCAAGTGGAATGTGGATTCTGTTCATGCCAAGAGCCTGGTGGCCATCTTACACCTGCTCGTTGCTCTGTCTCAGTATTTCCGCGCACCAATTCGACTCCCAGACCATGTTTCCATCCAAGTGGTTGTGGTCCAGAAACGAGAAGGAATCCTCCAGTCTCGGCAAATCCAAGAGGAAATAACTGGTAACACAGAGGCTCTTTCCGGGAGGCATGAACGTGATGCCTTTGACACCTTGTTCGACCATGCCCCAGACAAGCTGAATGTGGTGAAAAAGACACTCATCACTTTCGTGAACAAGCACCTGAATAAACTGAACCTGGAGGTCACAGAACTGGAAACCCAGTTTGCAGATGGGGTGTACCTGGTGCTGCTCATGGGGCTCCTGGAGGGCTACTTTGTGCCCCTGCACAGCTTCTTCCTGACCCCGGACAGCTTTGAACAGAAGGTCTTGAATGTCTCCTTTGCCTTTGAGCTCATGCAAGATGGAGGGTTGGAAAAGCCAAAACCGCGGCCAGAAGACATAGTCAACTGTGACCTGAAATCTACACTACGAGTGTTGTACAACCTCTTCACCAAGTACCGTAACGTGGAGTGA MEAQAQEKLESEKLNVAEVTQSEIAQKQKLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQKREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32146 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57865723:- chr14:58030638-58448912:- chr14:58332441:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr14:57854575,chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582 chr8:127299070,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063 NA NA chr14:58321293,chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300 chr8:128311315,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr14--chr8] 14 8 14 5.33 ONLY_REF_SPLICE YES_LDAS 0.2608 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32151 SLC22A17::CASC11 ENSG00000092096.19::ENSG00000249375.8 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1824 TRUE 3358 TRUE 1268 SLC22A17 ENSG00000092096.19 protein_coding - - chr14:23346314-23352912:- chr14:23347101:- chr14:23815523-23822121:- chr14:23816310:- CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127730922:- chr8:128698588-128751233:- chr8:128743168:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr8] 8 10 8 1.4 ONLY_REF_SPLICE YES_LDAS 0.1269 GT 1.6049 AG 1.3383 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32152 USP14::ENSG00000263551 ENSG00000101557.15::ENSG00000263551.6 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA USP14 ENSG00000101557.15 protein_coding + + chr18:158383-214629:+ chr18:204692:+ chr18:158383-214629:+ chr18:204692:+ ENSG00000263551 ENSG00000263551.6 lncRNA + + chr18:976589-1310018:+ chr18:1133843:+ chr18:976590-1310019:+ chr18:1133844:+ chr18:208823 chr18:1072829 NA NA chr18:208823 chr18:1072830 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.135 GT 1.6895 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32156 RBM25::PAPLN ENSG00000119707.14::ENSG00000100767.17 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1822 TRUE 3357 TRUE 1267 RBM25 ENSG00000119707.14 protein_coding + + chr14:73058532-73123899:+ chr14:73058705:+ chr14:73525240-73590607:+ chr14:73525413:+ PAPLN ENSG00000100767.17 protein_coding + + chr14:73237497-73274640:+ chr14:73268557:+ chr14:73704205-73741348:+ chr14:73735265:+ chr14:73067809,chr14:73067771,chr14:73067898,chr14:73067809 chr14:73265454,chr14:73265454,chr14:73265453,chr14:73265451 NA NA chr14:73534517,chr14:73534479,chr14:73534606,chr14:73534517 chr14:73732162,chr14:73732162,chr14:73732161,chr14:73732159 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.11Mb] 6 58 6 6.27 ONLY_REF_SPLICE YES_LDAS 0.1656 GT 1.8256 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32160 SLC35F4::PCAT1 ENSG00000151812.15::ENSG00000253438.5 NCIH82 SRR8615981 SRR8670699 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3359 TRUE 1269 SLC35F4 ENSG00000151812.15 protein_coding - - chr14:57563920-57982194:- chr14:57865723:- chr14:58030638-58448912:- chr14:58332441:- PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127322073:+ chr8:127568568-128431295:+ chr8:128334318:+ chr14:57854575,chr14:57854344,chr14:57854335,chr14:57854314,chr14:57854312,chr14:57854582 chr8:127299070,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127298166,chr8:127299063 NA NA chr14:58321293,chr14:58321062,chr14:58321053,chr14:58321032,chr14:58321030,chr14:58321300 chr8:128311315,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128310411,chr8:128311308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr14--chr8] 4 11 4 5.67 ONLY_REF_SPLICE YES_LDAS 0.1305 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32164 MACF1::SDCCAG8 ENSG00000127603.32::ENSG00000054282.16 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1831 FALSE NA FALSE NA MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39372596:+ chr1:39546988-39952849:+ chr1:39838268:+ SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243330540:+ chr1:243419336-243663393:+ chr1:243493842:+ chr1:39374855,chr1:39374850,chr1:39374855,chr1:39374852,chr1:39374853,chr1:39374854,chr1:39375162,chr1:39374830,chr1:39430062 chr1:243324002,chr1:243324002,chr1:243324004,chr1:243324004,chr1:243324004,chr1:243324009,chr1:243324004,chr1:243324004,chr1:243299073 NA NA chr1:39840527,chr1:39840522,chr1:39840527,chr1:39840524,chr1:39840525,chr1:39840526,chr1:39840834,chr1:39840502,chr1:39895734 chr1:243487304,chr1:243487304,chr1:243487306,chr1:243487306,chr1:243487306,chr1:243487311,chr1:243487306,chr1:243487306,chr1:243462375 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH|79-213|1.4e-21^CAMSAP_CH|96-118|0.14^CH|227-330|9.8e-26^CAMSAP_CH|253-281|0.0017^Spectrin|347-402|0.0038^Spectrin_4|457-554|5.1e-13^Spectrin|623-712|3.1e-06^Spectrin|713-807|1.2e-05^Spectrin|820-898|0.068^Spectrin_3|821-888|1.1e-26^SH3_10|889-955|3e-23^Spectrin_2|990-1067|7.5e-29^SR_plectin_7|1074-1193|6.3e-49^Laminin_II|1127-1178|0.24^Spectrin|1198-1303|0.15^Spectrin|1319-1375|0.016^SR_plectin_7|1418-1477|5.8^Spectrin|1439-1479|2.1^Spectrin|1462-1565|0.0055^SR_plectin_7|1485-1528|1.8^CcdA|1496-1529|2.9^Plectin|1579-1611|3.2e-05^Plectin|1611-1649|3.6e-12^CcdA|1632-1667|8.7^Plectin|1689-1726|8.6e-10^Plectin|1734-1744|1.7^Plectin|1770-1797|3.7e-05^Plectin|1802-1838|3.9e-18^Plectin|1841-1876|1.5e-10^Plectin|1887-1915|1.5e-06^Plectin|1928-1954|0.067^Plectin|2325-2362|7.3e-10^Plectin|2371-2394|8.3^Plectin|2401-2437|1.9e-08^Plectin|2439-2469|2.4e-08^Plectin|2503-2529|0.086^Plectin|2534-2572|4.3e-13^Plectin|2583-2609|0.0098^Plectin|2613-2644|8.4e-08^Peptidase_S49|2688-2723|4^Plectin|2720-2756|1.6e-12^Peptidase_S49|2732-2753|1.3^Plectin|2762-2793|5.9e-05^CTV_P33|2807-2896|0.00025^Spectrin|3425-3500|0.56^Spectrin|3522-3629|2e-05^Spectrin_2|3583-3622|2.4^Laminin_II|3612-3660|2.7^DotA|3635-3691|0.00054^Spectrin|3651-3758|4e-05^SR_plectin_7|3672-3708|3.3^Spectrin|3704-3790|0.012^CcdA|3745-3796|0.0016^SR_plectin_7|3750-3788|6.7^Peptidase_S49|3874-3912|0.0059^SR_plectin_7|3878-3922|3.2^Laminin_II|3904-3940|1.9^Spectrin_2|3905-3941|0.48^Spectrin|3915-3989|1.1e-09^Spectrin|4032-4140|1e-13^Laminin_II|4074-4143|0.59^Laminin_II|4118-4170|4.1^Spectrin|4147-4249|0.00011^SR_plectin_7|4182-4236|1.4^Laminin_II|4189-4238|1.3^Spectrin_3|4211-4273|2.4^Spectrin|4257-4352|0.00056^Spectrin_3|4288-4313|8.8^SR_plectin_7|4313-4399|3.2^Laminin_II|4331-4410|0.00018^Spectrin_4|4342-4407|2.2^Spectrin|4360-4426|0.00021^Spectrin|4465-4493|0.38^Laminin_II|4478-4521|2.5^Spectrin|4498-4606|1.6e-11^Peptidase_S49|4576-4606|8.3^Spectrin|4614-4715|5.6e-07^Laminin_II|4667-4762|9.4e-07^Spectrin|4723-4826|9.6e-05^SR_plectin_7|4734-4791|4.7^Plectin|4740-4749|9.5^Spectrin_2|4768-4787|4.1^Laminin_II|4799-4871|1.5^DotA|4813-4852|0.33^Spectrin|4832-4936|1.3e-14^Spectrin_3|4856-4878|7.7^SR_plectin_7|4866-4911|8.4^Laminin_II|4910-4971|0.89^Spectrin|4941-5044|2.2e-10^Laminin_II|5016-5091|0.047^Spectrin|5048-5123|0.01^SR_plectin_7|5078-5140|1.2^Spectrin|5160-5261|4.7e-05^Laminin_II|5160-5208|0.29^SR_plectin_7|5214-5252|2.7^Spectrin|5268-5373|3.9e-10^Laminin_II|5342-5417|0.14^Spectrin|5379-5482|4.3e-14^Spectrin|5487-5590|3.7e-12^Laminin_II|5514-5591|0.41^SR_plectin_7|5540-5626|3.4^Spectrin|5599-5694|1.8e-07^SR_plectin_7|5617-5666|4.4^Laminin_II|5648-5727|0.64^Spectrin|5704-5804|8.5e-07^Spectrin|5813-5917|1.5e-07^Spectrin|5925-6026|4.6e-10^Spectrin_3|5955-5982|7^Laminin_II|5998-6073|0.00025^Spectrin|6032-6136|6.4e-06^SR_plectin_7|6048-6103|0.021^EF-hand_7|6048-6080|5.5^Spectrin|6143-6248|2.4e-12^Laminin_II|6219-6296|0.23^Spectrin|6253-6357|3.8e-13^SR_plectin_7|6286-6312|3.6^Spectrin|6363-6466|3e-20^SR_plectin_7|6404-6454|2^Laminin_II|6444-6482|0.19^Spectrin|6471-6577|3.8e-09^Spectrin|6581-6685|6.7e-13^Laminin_II|6659-6730|0.17^Spectrin|6690-6796|3.8e-14^Spectrin|6803-6904|5.6e-16^Spectrin|6909-7012|7.2e-12^Peptidase_S49|6933-6965|0.53^Laminin_II|6993-7059|0.12^Spectrin|7025-7082|3e-07^SR_plectin_7|7035-7082|1.4^Spectrin|7120-7149|0.66^EF-hand_7|7182-7243|1.1e-12^EF-hand_1|7184-7207|1.9e-07^EF-hand_6|7184-7207|7.9e-07^EF-hand_8|7184-7206|0.00095^EF-hand_5|7186-7205|7.2e-07^EF-hand_8|7195-7244|1e-06^EF-hand_1|7225-7244|4.9e-07^EF-hand_6|7225-7245|2.5e-06^EF-hand_5|7226-7240|0.00088^GAS2|7260-7334|1.3e-31 none ["MACF1:Oncogene"];["SDCCAG8:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr1:203.77Mb] 911 592 911 592 ONLY_REF_SPLICE YES_LDAS 17.0629 GT 1.5656 AG 1.9219 ENST00000567887.5 1-13324 ENST00000366541.8 1069-2142 chr1|+|[0]39084219-39084438[0]|[1]39231182-39231243[2]|[0]39250014-39250103[2]|[0]39251846-39251941[2]|[0]39254298-39254375[2]|[0]39257936-39258028[2]|[0]39282208-39282374[1]|[2]39283189-39283301[0]|[1]39283409-39283515[2]|[0]39284066-39284185[2]|[0]39284333-39284428[2]|[0]39285083-39285210[1]|[2]39285297-39285390[2]|[0]39285604-39285758[1]|[2]39287286-39287562[2]|[0]39291910-39292038[2]|[0]39292766-39292843[2]|[0]39293458-39293619[2]|[0]39295046-39295150[2]|[0]39295787-39295882[2]|[0]39297620-39297745[2]|[0]39300210-39300362[2]|[0]39302924-39303078[1]|[2]39309570-39309696[2]|[0]39310245-39310428[0]|[1]39310831-39311000[2]|[0]39315513-39315691[1]|[2]39316391-39316529[2]|[0]39317214-39317407[1]|[2]39318453-39318615[2]|[0]39319664-39319747[2]|[0]39322608-39322715[2]|[0]39322910-39323008[2]|[0]39324193-39324345[2]|[0]39324646-39324734[1]|[2]39327218-39327353[2]|[0]39331203-39336653[2]|[0]39337182-39337331[2]|[0]39340502-39340717[2]|[0]39340804-39340953[2]|[0]39346977-39347210[2]|[0]39349478-39349627[2]|[0]39350785-39351018[2]|[0]39353007-39353231[2]|[0]39357375-39357893[2]|[0]39358697-39358873[2]|[0]39359141-39359264[0]|[1]39360793-39361001[2]|[0]39361360-39361677[2]|[0]39368148-39368314[1]|[2]39370030-39370186[2]|[0]39372479-39372596[0]<==>chr1|+|[0]243330540-243330692[2]|[0]243341039-243341173[2]|[0]243344215-243344331[2]|[0]243378721-243378863[1]|[2]243415702-243415829[0]|[1]243417968-243418076[1]|[2]243426427-243426558[1]|[2]243489014-243489140[2]|[0]243499756-243499785[2] 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MSSSDEETLSERSCRSERSCRSERSYRSERSGSLSPCPPGDTLPWNLPLHEQKKRKSQDSVLDPAERAVVRVADERDRVQKKTFTKWVNKHLMKVRKHINDLYEDLRDGHNLISLLEVLSGIKLEPAGLKTLRLVSMPSWCHTNNEEQAEEDDDDVPREKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIYISGESGDMSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRYRPDLVDMERVQIQSNRENLEQAFEVAERLGVTRLLDAEDVDVPSPDEKSVITYVSSIYDAFPKVPEGGEGISATEVDSRWQEYQSRVDSLIPWIKQHTILMSDKTFPQNPVELKALYNQYIHFKETEILAKEREKGRIEELYKLLEVWIEFGRIKLPQGYHPNDVEEEWGKLIIEMLEREKSLRPAVERLELLLQIANKIQNGALNCEEKLTLAKNTLQADAAHLESGQPVQCESDVIMYIQECEGLIRQLQVDLQILRDENYYQLEELAFRVMRLQDELVTLRLECTNLYRKGHFTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELVAISSSEDEGNLRFVYELLSWVEEMQMKLERAEWGNDLPSVELQLETQQHIHTSVEELGSSVKEARLYEGKMSQNFHTSYAETLGKLETQYCKLKETSSFRMRHLQSLHKFVSRATAELIWLNEKEEEELAYDWSDNNSNISAKRNYFSELTMELEEKQDVFRSLQDTAELLSLENHPAKQTVEAYSAAVQSQLQWMKQLCLCVEQHVKENTAYFQFFSDARELESFLRNLQDSIKRKYSCDHNTSLSRLEDLLQDSMDEKEQLIQSKSSVASLVGRSKTIVQLKPRSPDHVLKNTISVKAVCDYRQIEITICKNDECVLEDNSQRTKWKVISPTGNEAMVPSVCFLIPPPNKDAIEMASRVEQSYQKVMALWHQLHVNTKSLISWNYLRKDLDLVQTWNLEKLRSSAPGECHQIMKNLQAHYEDFLQDSRDSVLFSVADRLRLEEEVEACKARFQHLMKSMENEDKEETVAKMYISELKNIRLRLEEYEQRVVKRIQSLASSRTDRDAWQDNALRIAEQEHTQEDLQQLRSDLDAVSMKCDSFLHQSPSSSSVPTLRSELNLLVEKMDHVYGLSTVYLNKLKTVDVIVRSIQDAELLVKGYEIKLSQEEVVLADLSALEAHWSTLRHWLSDVKDKNSVFSVLDEEIAKAKVVAEQMSRLTPERNLDLERYQEKGSQLQERWHRVIAQLEIRQSELESIQEVLGDYRACHGTLIKWIEETTAQQEMMKPGQAEDSRVLSEQLSQQTALFAEIERNQTKLDQCQKFSQQYSTIVKDYELQLMTYKAFVESQQKSPGKRRRMLSSSDAITQEFMDLRTRYTALVTLTTQHVKYISDALRRLEEEEKVVEEEKQEHVEKVKELLGWVSTLARNTQGKATSSETKESTDIEKAILEQQVLSEELTTKKEQVSEAIKTSQIFLAKHGHKLSEKEKKQISEQLNALNKAYHDLCDGSANQLQQLQSQLAHQTEQKECRAVAGVIDLGTVEIFPIFKAMQKGLLDQDTGLVLLESQVIMSGLIAPETGENLSLEEGIARNLINPQMYQQLRELQDALALISRLTESRGPLSVVEAIEKRIISETVGLKILEAHLATGGFSLSPSENCINLEEAFHQGLISAWLHSVLESYLRTSKNLIDPNTAEKIGLLDLMQRCIVHQESGFKLLPVKQLAGGMVSLKSGRKVSIFRAVQEGLIDRQVTVRLLEAQLFAGGIVDPRTGHRLTVEEAVRHNLIDQDMACAILIRQLQTGGIIDTVTGQRLTIDEAVSNDLVAAKIALVILESLWSFMGLLWPESGEILPITDALEQGIVSTELAHKILSNRQHIKALFLPATTEILSWKKAIESGILDRDLANNLKSICIPDVMPHMQLADSAEQNINPGAAVLPCSKSHPKATASQSENLLFQLMTHSYINVQNGQRLLLLDKELMETLTSRDEYQTSPPKVVEIGHQRQKTPEGLQESANVKISGTFSSGWTVRLPEFQFSSQNKEYPDREDCTTEKGKKTTVETEDSSVENPEQDLFVEQKERNPNIDALKVINKVKLEVQRQLIGTQREDQTAVSVRENASRGHLLTIPPAEAEGVPLVVDKDVFSVETPKKEHQPLRNTSFTCQNEQAHTLETEYIHDETGGSHIKPQSKKLQVQVKKTLGIKLELKSETDGNVHPLDKKEMLKKTFLAKDDHKESQEAQNIAGGSMMMSEKTDEEDSGREIFLSCSHPLELLEEATLNVLSAQLLDGGIFHEQTGQKLLLNEAISRGIVPSHTAVKLMEKLNMFQGFFDSQTCESLTTEEVINEGLMDEKLLHNVLMADKAISGVLDPRTQTLCSVKDAVTVGLLDKETATRILERQVVTGGIIDLKRGKKVSVTLASTLGLVDVADQPELINLEKASKGRDAEKTVRERLISLQMETTGLIDPDSKAPLTVVQSIDRGLLEREEAVRLLTKQVVDGGIIHHISGMRLSVDNAFRHGLIGEDLAEKLKRVENLNIHQIFNPETKENISLPKAIKLDLITSDLKREIQEVQAFTGNFVDLISGQRLTLAEAKKEGLLTNEAVLSPGMMHGIVDPENCRIVPYSELVKKCKIDIESGQRYLEVIPFSDIKDGVSDKVLTLSQAIQLGKVDFASTLKVLEAQANTGGIIDTATGKRLTLASALEEKLVDENMVRIIASHQVLNGGIVDIFSDQRVTLVEAIEKRLISPELANMIQIDSSEFSDHRAQIEKQEGIEVCALQNEFLGKDMLIACNQTAEMSCNKVEESERLFQVENQSAQEKVKVRVSDGEQAKKSREISLKEFGCKDQRKPRMSSDAKEFISIINPHNLKGKSLGQVSLTHPYSECDFKLKEVARNNMGNDTNEEQEKAVTKIEIISHMKQSTSCLDSEEIRENQGEVILEVQETYCETSGKLPSEQVLQQPMNARVKSKREKREVIVEESIRTCKPAFLSEEKLYQETAIRDEHDSHIKSQPREMTSSEKGKEADTEMGFSITFKIEESSSQVVPQGISVKHLDALTLFSSKQANEGKVNNLSLCLTLKPEENLSREIACGAQSEPFPCMTPRPEGLHYQESDGKAQVTGPSQISKTDKSFQGTTRQETNYQDSWVTSKTKETKHQISSSNECKEKSYQEVSFDPARGLKLEEITVSRPDSKEVRYLEFSDRKDLHHQGSKSDDKLCGTLKSEIATQELTGEKFLEMANPNVAGLEAGSIEDIVTQRGSRVLGSFLPEKLFKGVSQKENTGQQNAIISPTVLETSEEKTVSLTVCSAVKTEKTPQEKLRESPGSEQTPFMTAPEGKGNGGVNPEPFRATQNVFTRQLCLEHDEKLVSYLSLLRNIEMRTKQIQPLELNLAELQDLLCQAKVLERELKDLTTLVSQELECVNQIIISQPQEVPAQLLKALEKDAKNLQKSLSSVSDTWNSRLLHFQNAVEIEKTKVLNQHTQLEGRLQDLRAWVGNKNLILNSKGSNSEIDVDSLNLCLQQYEDLKQPMAERKAQLDALAFDIQFFISEHAQDLSPQQNRQMLRLLNELQRSFQDILEQTAAQVDALQGHLQQMEQEALVKTLQKQQNTCHQQLEDLCSWVGQAERALAGHQGRTTQQDLSALQKNQSDLKDLQDDIQNRATSFATVVKDIEGFMEENQTKLSPRELTALREKLHQAKEQYEALQEETRVAQKELEEAVTSALQQETEKSKAAKELAENKKKIDALLDWVTSVGSSGGQLLTNLPGMEQLSGASLEKGALDTTDGYMGVNQAPEKLDKQCEMMKARHQELLSQQQNFILATQSAQAFLDQHGHNLTPEEQQMLQQKLGELKEQYSTSLAQSEAELKQVQTLQDELQKFLQDHKEFESWLERSEKELENMHKGGSSPETLPSLLKRQGSFSEDVISHKGDLRFVTISGQKVLDMENSFKEGKEPSEIGNLVKDKLKDATERYTALHSKCTRLGSHLNMLLGQYHQFQNSADSLQAWMQACEANVEKLLSDTVASDPGVLQEQLATTKQLQEELAEHQVPVEKLQKVARDIMEIEGEPAPDHRHVQETTDSILSHFQSLSYSLAERSSLLQKAIAQSQSVQESLESLLQSIGEVEQNLEGKQVSSLSSGVIQEALATNMKLKQDIARQKSSLEATREMVTRFMETADSTTAAVLQGKLAEVSQRFEQLCLQQQEKESSLKKLLPQAEMFEHLSGKLQQFMENKSRMLASGNQPDQDITHFFQQIQELNLEMEDQQENLDTLEHLVTELSSCGFALDLCQHQDRVQNLRKDFTELQKTVKEREKDASSCQEQLDEFRKLVRTFQKWLKETEGSIPPTETSMSAKELEKQIEHLKSLLDDWASKGTLVEEINCKGTSLENLIMEITAPDSQGKTGFNPV*PVEEGAGEAGGAT*KRTCISAREKGH*ERHDEKGNNERKGVHGIKDVDLVSEYCPTGGPGGKGYKGKDFSY*STGGNSKPAGFSGNGCHKGVWRNALSAE*NQHGEG*GRKGAQRVQSKN*QGS*N*RSGNREIENRTG*KQTTLGTGAAEGSPGQRGVPETNRTAGRI*APTAPHQTGKR*HSAEL*QGSKGPSPSGPAKRAGADTEDTANGGPA*QN*K*TVFVADLPEYIFDKVKGRMLYISQETGTNLSKNQI*NSSTQSRKKVYI**IGKVTEKK*RIGGTVCPAWEST*DDEAKAKAAG*AQPGHSPAAGAAPQQAEPASPGEAEPVGRGGPAADPVTQHATI*LL FALSE FALSE NA NA TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32165 SDCCAG8::MACF1 ENSG00000054282.16::ENSG00000127603.32 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1832 FALSE NA FALSE NA SDCCAG8 ENSG00000054282.16 protein_coding + + chr1:243256034-243500091:+ chr1:243378863:+ chr1:243419336-243663393:+ chr1:243542165:+ MACF1 ENSG00000127603.32 protein_coding + + chr1:39081316-39487177:+ chr1:39378461:+ chr1:39546988-39952849:+ chr1:39844133:+ chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243384704,chr1:243384705,chr1:243384705,chr1:243384705,chr1:243430611,chr1:243429995,chr1:243430074 chr1:39375321,chr1:39375317,chr1:39375313,chr1:39375310,chr1:39375298,chr1:39375293,chr1:39375291,chr1:39375290,chr1:39375283,chr1:39375292,chr1:39375267,chr1:39375268,chr1:39375314,chr1:39375266,chr1:39375286,chr1:39375318,chr1:39375263,chr1:39375259,chr1:39375256,chr1:39375254,chr1:39375252,chr1:39375251,chr1:39375258,chr1:39365250,chr1:39365251,chr1:39365314 NA NA chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243548006,chr1:243548007,chr1:243548007,chr1:243548007,chr1:243593913,chr1:243593297,chr1:243593376 chr1:39840993,chr1:39840989,chr1:39840985,chr1:39840982,chr1:39840970,chr1:39840965,chr1:39840963,chr1:39840962,chr1:39840955,chr1:39840964,chr1:39840939,chr1:39840940,chr1:39840986,chr1:39840938,chr1:39840958,chr1:39840990,chr1:39840935,chr1:39840931,chr1:39840928,chr1:39840926,chr1:39840924,chr1:39840923,chr1:39840930,chr1:39830922,chr1:39830923,chr1:39830986 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CCCAP|6-706|0^ATG16|72-175|0.0087^ATG16|222-269|4.4e-06^ATG16|313-384|3.2^ATG16|367-540|4^Homoserine_dh|404-469|0.0062^Aegerolysin|458-511|2.6e-05^ATG16|547-691|4^Aegerolysin|561-581|1.8 none ["SDCCAG8:Oncogene"];["MACF1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr1:203.77Mb] 684 434 684 434 ONLY_REF_SPLICE YES_LDAS 12.6921 GT 1.7968 AG 1.8323 ENST00000366541.8 1-1616 ENST00000564288.6 13214-22668 chr1|+|[0]243256174-243256240[0]|[1]243270105-243270257[0]|[1]243270978-243271063[2]|[0]243274543-243274656[2]|[0]243286272-243286397[2]|[0]243293091-243293219[2]|[0]243304713-243304777[1]|[2]243307989-243308177[1]|[2]243316755-243316893[2]|[0]243330540-243330692[2]|[0]243341039-243341173[2]|[0]243344215-243344331[2]|[0]243378721-243378863[1]<==>chr1|+|[1]39378461-39378523[0]|[1]39379203-39379444[2]|[0]39380244-39380373[0]|[1]39381953-39382152[2]|[0]39385434-39385929[0]|[1]39387187-39388658[2]|[0]39422374-39422535[2]|[0]39422730-39422900[2]|[0]39424028-39424194[1]|[2]39427455-39427614[2]|[0]39427961-39428287[2]|[0]39429242-39429326[0]|[1]39429827-39430068[2]|[0]39430702-39430908[2]|[0]39432535-39432654[2]|[0]39433048-39433155[2]|[0]39434414-39434632[2]|[0]39435558-39435761[2]|[0]39437777-39438008[0]|[1]39439274-39439500[2]|[0]39441003-39441125[2]|[0]39441224-39441325[2]|[0]39441952-39442053[2]|[0]39442147-39442320[2]|[0]39442412-39442567[2]|[0]39442714-39442911[2]|[0]39443446-39443574[2]|[0]39444662-39444835[2]|[0]39447432-39447587[2]|[0]39447692-39447898[2]|[0]39448033-39448152[2]|[0]39448594-39448763[1]|[2]39451052-39451211[2]|[0]39452156-39452350[2]|[0]39452684-39452812[2]|[0]39453707-39453850[2]|[0]39454909-39455097[2]|[0]39458370-39458490[0]|[1]39459086-39459249[2]|[0]39460632-39460794[0]|[1]39461883-39462037[2]|[0]39463612-39463686[2]|[0]39465095-39465112[2]|[0]39468615-39468732[0]|[1]39469547-39469615[0]|[1]39479798-39480009[2]|[0]39480920-39481030[2]|[0]39484601-39484730[0]|[1]39485538-39485794[2] atggcgaagtccccggagaactctaccctggaggagattctggggcagtatcaacggagtctccgggaacatgccagcagaagcattcaccaactgacatgtgccctgaaagaaggcgatgtcactattggagaagatgcaccaaatctttcttttagcaccagtgtgggaaatgaggacgccaggacagcctggcccgaattacaacagagccatgctgttaatcagctcaaagatttgttgcgccaacaagcagataaggaaagtgaagtatctccgtcaagaagaagaaaaatgtcccccttgaggtcattagaacatgaggaaaccaatatgcctactatgcacgaccttgttcatactattaatgaccagtctcaatatattcatcatttagaggcagaagttaagttctgcaaggaggaactctctggaatgaaaaataaaatacaagtagttgtgcttgaaaacgaagggctccagcaacagctaaaatctcaaagacaagaggagacactgagggaacaaacacttctggatgcatccggaaacatgcacaattcttggattacaacaggtgaagattctggggtgggcgaaacctccaaaagaccattttcccatgacaatgcagattttggcaaagctgcatctgctggtgagcagctagaactggagaagctaaaacttacttatgaggaaaagtgtgaaattgaggaatcccaattgaagtttttgaggaacgacttagctgaatatcagagaacttgtgaagatcttaaagagcaactaaagcataaagaatttcttctggctgctaatacttgtaaccgtgttggtggtctttgtttgaaatgtgctcagcatgaagctgttctttcccaaacccatactaatgttcatatgcagaccatcgaaagactggttaaagaaagagatgacttgatgtctgcactagtttccgtaaggagcagcttggcagatacgcagcaaagagaagcaagtgcttatgaacaggtgaaacaagttttgcaaatatctgaggaagccaattttgaaaaaaccaaggctttaatccagtgtgaccagttgaggaaggagctggagaggcaggcggagcgacttgaaaaagaacttgcatctcagcaagagaaaagggccattgagaaagacatgatgaaaaaggaaataacgaaagaaagggagtacatgggatcaaagatgttgatcttgtctcagaatattgcccaactggaggcccaggtggaaaaggttacaaaggaaaagatttcagctattaatcaactggaggaaattcaaagccagctggcttctcgggaaatggatgtcacaaaggtgtgtggagaaatgcgctatcagctgaataaaaccaacatggagaaggatgaggcagaaaaggagcacagagagttcagagcaaaaactaacagggatcttgaaattaaagatcaggaaatagagaaattgagaatagaactggatgaaagcaaacaacacttggaacaggagcagcagaaggcagccctggccagagaggagtgcctgagactaacagaactgctgggcgaatctgagcaccaactgcacctcaccagGTTCCATACTGCCCTCTGTAGGAAGCTCTGTAGGCAGTGTAAACGGATACCACACCTGCAAAGATCTGACGGAGATCCAGTGTGACATGTCAGATGTAAACTTGAAGTATGAGAAACTAGGGGGAGTACTTCATGAACGCCAGGAAAGCCTTCAGGCTATCCTCAACAGAATGGAGGAGGTTCACAAGGAGGCAAACTCTGTGCTGCAGTGGCTGGAATCAAAAGAGGAAGTCCTGAAATCCATGGATGCCATGTCATCTCCAACCAAGACAGAAACAGTGAAAGCCCAAGCTGAATCTAACAAGGCCTTCCTGGCTGAGTTGGAACAGAATTCTCCAAAAATTCAAAAAGTAAAGGAAGCCCTGGCTGGATTACTGGTGACATATCCCAACTCACAGGAAGCAGAAAATTGGAAGAAAATTCAGGAAGAACTCAATTCCCGATGGGAAAGGGCCACTGAGGTTACTGTGGCTCGGCAAAGGCAGCTAGAGGAATCTGCAAGTCATCTGGCCTGCTTCCAGGCTGCAGAATCCCAGCTCCGGCCGTGGCTGATGGAGAAAGAACTGATGATGGGAGTGCTGGGGCCCCTGTCTATTGACCCCAACATGTTGAATGCACAAAAGCAACAGGTCCAGTTTATGCTAAAGGAATTTGAAGCACGCAGGCAACAGCATGAGCAACTGAATGAGGCAGCTCAGGGCATCCTAACAGGCCCTGGAGATGTCTCTCTGTCCACCAGCCAAGTACAGAAAGAACTCCAGAGCATCAATCAGAAATGGGTTGAGCTGACTGACAAACTCAACTCCCGTTCCAGCCAAATTGACCAAGCTATTGTTAAGAGCACCCAGTACCAGGAACTGCTCCAGGACTTATCAGAGAAGGTGAGGGCAGTTGGACAACGGCTGAGTGTCCAGTCAGCTATCAGCACCCAACCAGAGGCTGTAAAGCAGCAATTGGAAGAGACCAGTGAAATTCGATCTGACTTGGAGCAGTTAGACCACGAGGTTAAGGAGGCTCAGACACTGTGCGATGAACTCTCAGTGCTCATTGGTGAGCAGTACCTCAAGGATGAACTGAAGAAGCGTTTGGAGACAGTTGCCCTGCCTCTCCAAGGTTTAGAAGACCTTGCAGCCGATCGCATTAACAGACTCCAGGCAGCTCTTGCCAGCACCCAGCAGTTCCAGCAAATGTTTGATGAGTTGAGGACCTGGTTGGATGATAAACAAAGCCAGCAAGCAAAAAACTGCCCAATTTCTGCAAAATTGGAGCGGCTACAGTCTCAGCTACAGGAGAATGAAGAGTTTCAGAAAAGTCTTAATCAACACAGTGGCTCCTATGAGGTGATTGTGGCTGAAGGGGAATCTCTACTTCTTTCTGTACCTCCTGGAGAAGAGAAAAGGACTCTACAAAACCAGTTGGTTGAGCTCAAAAACCATTGGGAAGAGCTTAGTAAAAAAACTGCAGACAGACAATCCAGGCTCAAGGATTGTATGCAGAAAGCTCAGAAATATCAGTGGCATGTGGAAGACCTTGTGCCATGGATAGAAGATTGTAAAGCTAAGATGTCTGAGTTGCGAGTCACTCTGGATCCAGTGCAGCTAGAGTCCAGTCTCCTAAGATCAAAGGCTATGCTGAATGAGGTGGAGAAGCGCCGCTCCCTGCTGGAAATATTGAATAGTGCTGCTGACATTCTGATCAATTCTTCAGAAGCAGATGAGGATGGAATCCGGGATGAGAAGGCTGGGATCAACCAGAACATGGATGCTGTTACAGAAGAGCTGCAGGCCAAAACAGGGTCACTCGAAGAAATGACTCAGAGGCTCAGGGAGTTCCAGGAAAGCTTTAAGAATATTGAAAAGAAGGTTGAAGGAGCCAAACACCAACTTGAGATCTTTGATGCTCTGGGTTCTCAAGCCTGTAGCAACAAGAACCTGGAGAAGCTAAGAGCTCAACAGGAAGTGCTGCAGGCCCTAGAGCCTCAGGTAGACTATCTGAGGAACTTTACTCAGGGTCTGGTAGAAGATGCCCCAGATGGATCTGATGCTTCTCAACTTCTCCACCAAGCTGAGGTCGCCCAGCAAGAGTTCCTCGAAGTTAAGCAAAGAGTGAACAGTGGTTGTGTGATGATGGAAAACAAGCTGGAGGGGATTGGCCAGTTTCACTGCCGGGTCCGAGAGATGTTCTCTCAATTGGCAGACCTGGATGATGAGCTAGATGGCATGGGTGCTATTGGCAGAGACACTGATAGCCTCCAGTCCCAAATCGAGGATGTCCGGCTATTCCTTAACAAAATTCACGTCCTCAAATTAGACATAGAGGCCTCTGAAGCAGAGTGTCGACATATGCTAGAAGAAGAGGGGACTCTGGATTTGTTAGGTCTCAAAAGGGAGCTAGAAGCCCTGAACAAACAGTGTGGCAAACTGACAGAGAGGGGGAAAGCTCGTCAGGAACAGCTGGAACTGACACTAGGCCGTGTAGAGGACTTCTACAGGAAATTGAAAGGACTCAATGACGCGACCACAGCAGCAGAGGAGGCAGAGGCCCTCCAGTGGGTAGTGGGGACCGAAGTGGAAATCATCAACCAACAATTAGCAGATTTTAAAATGTTTCAGAAAGAACAAGTGGATCCTCTTCAGATGAAATTGCAGCAGGTGAATGGACTTGGCCAGGGATTAATTCAGAGTGCAGGAAAAGACTGTGATGTACAGGGTTTAGAACATGACATGGAAGAGATCAATGCTCGATGGAATACATTGAATAAAAAGGTCGCACAAAGAATTGCACAGCTACAGGAAGCTTTGTTGCATTGTGGGAAGTTTCAAGATGCCTTGGAGCCATTGCTCAGCTGGTTGGCAGATACCGAGGAGCTCATAGCCAATCAGAAACCTCCATCTGCTGAGTATAAAGTGGTGAAAGCACAGATCCAAGAACAGAAGTTGCTCCAGCGGCTCCTAGATGATCGAAAGGCCACAGTAGACATGCTTCAAGCAGAAGGAGGCAGAATAGCCCAGTCAGCAGAGCTGGCTGATAGAGAGAAAATCACTGGACAGCTGGAGAGTCTTGAAAGTAGATGGACTGAACTACTCAGTAAGGCAGCAGCCAGGCAAAAACAGCTGGAAGACATCCTGGTTCTGGCCAAACAGTTCCATGAGACAGCTGAGCCTATTTCTGACTTCTTATCTGTCACAGAGAAAAAGCTTGCTAACTCAGAACCTGTTGGCACTCAGACTGCCAAAATACAGCAGCAGATCATTCGGCACAAGGCTCTGGAAGAAGACATAGAAAACCATGCAACAGATGTGCACCAGGCAGTCAAAATTGGGCAGTCCCTCTCCTCCCTGACATCTCCTGCAGAACAGGGTGTGCTGTCAGAAAAGATAGACTCATTGCAGGCCCGATACAGTGAAATTCAAGACCGCTGTTGTCGGAAGGCAGCCCTACTTGACCAAGCTCTGTCTAATGCTAGGCTGTTTGGGGAGGATGAGGTGGAGGTGCTCAACTGGCTGGCTGAGGTTGAGGACAAGCTCAGTTCAGTGTTCGTAAAGGATTTCAAACAGGATGTCCTGCACAGGCAGCATGCTGACCACCTGGCTTTAAATGAAGAAATTGTTAATAGAAAGAAGAATGTAGATCAAGCTATTAAAAATGGTCAGGCTCTTCTAAAACAAACCACAGGTGAGGAGGTGTTACTTATCCAGGAAAAACTAGATGGTATAAAGACTCGTTACGCAGACATCACAGTTACTAGCTCCAAGGCCCTCAGAACTTTAGAGCAAGCCCGGCAGCTGGCCACCAAGTTCCAGTCTACTTATGAGGAACTGACCGGGTGGCTGAGGGAGGTGGAGGAGGAGCTGGCAACCAGTGGAGGACAGTCTCCCACAGGGGAACAGATACCCCAGTTTCAGCAGAGACAGAAGGAATTAAAGAAGGAGGTCATGGAGCACAGGCTGGTGTTGGACACAGTGAATGAGGTGAGCCGTGCTCTCTTAGAGCTGGTGCCCTGGAGAGCCAGAGAAGGGCTGGATAAACTTGTGTCCGATGCTAACGAGCAGTACAAACTAGTCAGTGACACTATTGGACAAAGGGTGGATGAAATTGATGCTGCTATTCAGAGATCACAACAGTATGAGCAAGCTGCCGATGCAGAACTAGCTTGGGTTGCTGAAACAAAACGGAAACTGATGGCTCTGGGTCCAATTCGCCTGGAACAGGACCAGACCACAGCTCAGCTTCAGGTACAGAAGGCTTTCTCCATTGACATTATTCGACACAAAGATTCAATGGATGAACTCTTCAGTCACCGTAGTGAAATCTTTGGCACATGTGGGGAGGAGCAAAAAACTGTATTACAGGAAAAGACAGAGTCTCTAATACAGCAATATGAAGCCATTAGCCTACTCAATTCAGAGCGTTATGCCCGCCTAGAGCGGGCCCAGGTCTTAGTAAACCAGTTTTGGGAAACTTATGAAGAGCTCAGCCCCTGGATTGAGGAAACTCGGGCACTAATAGCACAGTTACCCTCTCCAGCCATTGATCATGAGCAGCTCAGGCAGCAACAAGAGGAAATGAGGCAATTAAGGGAATCTATTGCTGAACACAAACCTCATATTGACAAACTACTAAAGATAGGCCCACAACTAAAGGAATTAAACCCTGAGGAAGGGGAAATGGTGGAAGAAAAATACCAGAAAGCAGAAAACATGTATGCCCAAATAAAGGAGGAGGTGCGCCAGCGAGCCCTGGCTCTGGATGAAGCCGTGTCCCAGTCCACACAGTTTCATGATAAAATTGAGCCTATGTTGGAGACACTGGAGAATCTTTCCTCTCGCCTGCGTATGCCACCACTGATCCCTGCTGAAGTAGACAAGATCAGAGAGTGCATCAGTGACAATAAGAGTGCCACCGTGGAGCTAGAAAAACTGCAGCCATCCTTTGAGGCCTTGAAGCGCCGTGGAGAGGAGCTTATTGGACGATCTCAGGGAGCAGACAAGGATCTGGCTGCAAAAGAAATCCAGGATAAATTGGATCAAATGGTATTCTTCTGGGAGGACATCAAAGCTCGGGCTGAAGAACGAGAAATCAAATTTCTTGATGTCCTTGAATTAGCAGAGAAGTTCTGGTATGACATGGCAGCTCTCCTGACCACCATCAAAGACACCCAGGATATTGTCCATGACTTGGAAAGCCCAGGCATTGATCCTTCCATCATCAAACAACAGGTTGAAGCTGCTGAGACTATTAAGGAAGAGACAGATGGTCTGCATGAAGAGCTGGAGTTTATTCGGATCCTTGGAGCAGATTTGATTTTTGCCTGTGGAGAAACTGAGAAGCCTGAAGTGAGGAAGAGCATTGATGAGATGAATAATGCTTGGGAGAACTTAAACAAAACATGGAAAGAGAGGCTAGAAAAACTTGAGGATGCTATGCAAGCTGCTGTGCAGTATCAGGACACTCTTCAGGCTATGTTTGACTGGCTAGATAACACTGTGATTAAACTCTGCACCATGCCCCCTGTTGGCACTGACCTCAATACTGTTAAAGATCAGTTAAATGAAATGAAGGAGTTCAAAGTAGAAGTTTACCAACAGCAAATTGAGATGGAGAAGCTTAATCACCAGGGTGAACTGATGTTAAAGAAAGCTACTGATGAGACGGACAGAGACATTATACGAGAACCACTGACAGAACTCAAACACCTCTGGGAGAACCTGGGTGAGAAAATTGCCCACCGACAGCACAAACTAGAAGGGGCTCTGTTGGCCCTTGGTCAGTTCCAGCATGCCTTAGAGGAACTAATGAGTTGGCTGACTCATACCGAAGAGTTGTTAGATGCTCAGAGACCAATAAGTGGAGACCCAAAAGTCATTGAAGTTGAGCTCGCAAAGCACCATGTCCTAAAAAATGATGTTTTGGCTCATCAAGCCACAGTGGAAACAGTCAACAAAGCTGGCAATGAGCTTCTTGAATCCAGTGCTGGAGATGATGCCAGCAGCTTAAGGAGCCGTTTGGAAGCCATGAACCAATGCTGGGAGTCAGTGTTACAGAAAACAGAGGAGAGGGAGCAGCAGCTTCAGTCAACTCTGCAGCAGGCCCAGGGCTTCCACAGTGAAATTGAAGATTTCCTCTTGGAACTTACTAGAATGGAGAGCCAGCTTTCTGCATCTAAGCCCACAGGAGGACTTCCTGAAACTGCTAGGGAACAGCTTGATACACATATGGAACTCTATTCCCAGCTGAAAGCCAAGGAAGAGACTTATAATCAACTACTTGACAAGGGCAGACTCATGCTTCTAAGCCGTGACGACTCTGGGTCTGGCTCCAAGACAGAACAGAGTGTAGCACTTTTGGAGCAGAAGTGGCATGTGGTCAGCAGTAAGATGGAAGAAAGAAAGTCAAAGCTGGAAGAGGCCCTCAACTTGGCAACAGAATTCCAGAATTCCCTACAAGAATTTATCAACTGGCTCACTCTAGCAGAGCAGAGTTTAAACATCGCTTCTCCACCAAGCCTGATTCTAAATACTGTCCTTTCCCAGATAGAAGAGCACAAGGTTTTTGCTAATGAAGTAAATGCTCATCGAGACCAGATCATTGAGCTGGATCAAACTGGGAATCAATTAAAGTTCCTTAGCCAAAAGCAGGATGTTGTTCTGATCAAGAATTTGTTGGTGAGCGTGCAGTCTCGATGGGAGAAGGTTGTCCAGCGATCTATTGAAAGAGGGCGATCACTAGATGATGCCAGGAAGCGGGCAAAACAATTCCATGAAGCTTGGAAAAAACTGATTGACTGGCTAGAAGATGCAGAGAGTCACCTGGACTCAGAACTAGAGATATCCAATGACCCAGACAAAATTAAACTTCAGCTTTCTAAGCATAAGGAGTTTCAGAAGACTCTTGGTGGCAAGCAGCCTGTGTATGATACCACAATTAGAACTGGCAGAGCACTGAAAGAAAAGACTTTGCTTCCCGAAGATAGTCAGAAACTTGACAATTTCCTAGGAGAAGTCAGAGACAAATGGGATACTGTTTGTGGCAAGTCTGTGGAGCGGCAGCACAAGTTGGAGGAAGCCCTGCTCTTTTCGGGTCAGTTCATGGATGCTTTGCAGGCATTGGTTGACTGGTTATACAAGGTGGAGCCACAGCTGGCTGAGGACCAGCCCGTGCACGGGGACCTTGACCTCGTCATGAACCTCATGGATGCACACAAGGTTTTCCAGAAGGAACTGGGAAAGCGAACAGGAACCGTTCAGGTCCTGAAGCGGTCAGGCCGAGAGCTGATTGAGAATAGTCGAGATGACACCACTTGGGTAAAAGGACAGCTCCAGGAACTGAGCACTCGCTGGGACACTGTCTGTAAACTCTCTGTTTCCAAACAAAGCCGGCTTGAGCAGGCCTTAAAACAAGCGGAAGTGTTTCGAGACACAGTCCACATGCTGTTGGAGTGGCTTTCTGAAGCAGAGCAAACGCTTCGCTTTCGGGGAGCACTTCCTGATGACACAGAGGCCCTGCAGTCTCTCATTGACACCCATAAGGAATTCATGAAGAAAGTAGAAGAAAAGCGAGTGGACGTTAACTCAGCAGTAGCCATGGGAGAAGTCATCCTGGCTGTCTGCCACCCCGATTGCATCACAACCATCAAACACTGGATCACCATCATCCGAGCTCGCTTCGAGGAGGTCCTGACATGGGCTAAGCAGCACCAGCAGCGTCTTGAAACGGCCTTGTCAGAACTGGTGGCTAATGCTGAGCTCCTGGAAGAACTTCTGGCATGGATCCAGTGGGCTGAGACCACCCTCATTCAGCGGGATCAGGAGCCAATCCCGCAGAACATTGACCGAGTTAAAGCCCTTATCGCTGAGCATCAGACATTTATGGAGGAGATGACTCGCAAACAGCCTGACGTGGACCGGGTCACCAAGACATACAAAAGGAAAAACATAGAGCCTACTCACGCGCCTTTCATAGAGAAATCCCGCAGCGGAGGCAGGAAATCCCTAAGTCAGCCAACCCCTCCTCCCATGCCAATCCTTTCACAGTCTGAAGCAAAAAACCCACGGATCAACCAGCTTTCTGCCCGCTGGCAGCAGGTGTGGCTGTTAGCACTGGAGCGGCAAAGGAAACTGAATGATGCCTTGGATCGGCTGGAGGAGTTGAAAGAATTTGCCAACTTTGACTTTGATGTCTGGAGGAAAAAGTATATGCGTTGGATGAATCACAAAAAGTCTCGAGTGATGGATTTCTTCCGGCGCATTGATAAGGACCAGGATGGGAAGATAACACGTCAGGAGTTTATCGATGGCATTTTAGCATCCAAGTTCCCCACCACCAAGTTAGAGATGACTGCTGTGGCTGACATTTTCGACCGAGATGGGGATGGTTACATTGATTATTATGAATTTGTGGCTGCTCTTCATCCCAACAAGGATGCGTATCGACCAACAACCGATGCAGATAAAATCGAAGATGAGGTTACAAGACAAGTGGCTCAGTGCAAATGTGCAAAAAGGTTTCAGGTGGAGCAGATCGGAGAGAATAAATACCGGTTCTTCCTCGGCAATCAGTTTGGGGATTCTCAGCAGTTGCGGCTGGTCCGTATTCTGCGCAGCACCGTGATGGTTCGCGTTGGTGGAGGATGGATGGCCTTGGATGAATTTTTAGTGAAAAATGATCCCTGCCGAGTTCACCATCCTGGGAGTAAAATAAAGCGCTCTGATTCCAGCTCTTCGATTTCCAGTCAGTCTCCCATAGCACGAGGTAGAACTAACATTGAACTTAGAGAGAAATTCATCCTACCAGAGGGAGCATCCCAGGGAATGACCCCCTTCCGCTCACGGGGTCGAAGGTCCAAACCATCTTCCCGGGCAGCTTCCCCTACTCGTTCCAGCTCCAGTGCTAGTCAGAGTAACCACAGCTGTACATCCATGCCATCTTCTCCAGCCACCCCAGCCAGTGGAACCAAGACTTCACTTCAGTTCTCTCGCTGTTATGACAAACCCTGGTTGGTAAACAGTAAAGCTGGCACCCCTATCAGGGACAGCCATTCTCCTGACCTCCAGCTGCCCACCCCCGAGGTTATCCCATCATCAGGTAGCAAGTTGAAACGACCAACACCAACTTTTCATTCTAGTCGGACATCCCTTGCTGGTGATACCAGCAATAGTTCTTCCCCGGCCTCCACAGGTGCCAAAACTAATCGGGCAGACCCTAAAAAGTCTGCCAGTCGCCCTGGGAGTCGGGCTGGGAGTCGAGCCGGGAGTCGAGCCAGCAGCCGGCGAGGAAGTGACGCTTCTGACTTTGACCTCTTAGAGACGCAGTCTGCTTGTTCCGACACTTCAGAAAGCAGCGCTGCAGGGGGCCAAGGCAACTCCAGGAGAGGGCTAAACAAACCTTCCAAAATCCCAACCATGTCTAAGAAGACCACCACTGCCTCCCCCAGGACTCCAGGTCCCAAGCGATAA MAKSPENSTLEEILGQYQRSLREHASRSIHQLTCALKEGDVTIGEDAPNLSFSTSVGNEDARTAWPELQQSHAVNQLKDLLRQQADKESEVSPSRRRKMSPLRSLEHEETNMPTMHDLVHTINDQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDASGNMHNSWITTGEDSGVGETSKRPFSHDNADFGKAASAGEQLELEKLKLTYEEKCEIEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAANTCNRVGGLCLKCAQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRFHTALCRKLCRQCKRIPHLQRSDGDPV*HVRCKLEV*ETRGSTS*TPGKPSGYPQQNGGGSQGGKLCAAVAGIKRGSPEIHGCHVISNQDRNSESPS*I*QGLPG*VGTEFSKNSKSKGSPGWITGDISQLTGSRKLEENSGRTQFPMGKGH*GYCGSAKAARGICKSSGLLPGCRIPAPAVADGERTDDGSAGAPVY*PQHVECTKATGPVYAKGI*STQATA*ATE*GSSGHPNRPWRCLSVHQPSTERTPEHQSEMG*AD*QTQLPFQPN*PSYC*EHPVPGTAPGLIREGEGSWTTAECPVSYQHPTRGCKAAIGRDQ*NSI*LGAVRPRG*GGSDTVR*TLSAHW*AVPQG*TEEAFGDSCPASPRFRRPCSRSH*QTPGSSCQHPAVPANV**VEDLVG**TKPASKKLPNFCKIGAATVSATGE*RVSEKS*STQWLL*GDCG*RGISTSFCTSWRREKDSTKPVG*AQKPLGRA**KNCRQTIQAQGLYAESSEISVACGRPCAMDRRL*S*DV*VASHSGSSAARVQSPKIKGYAE*GGEAPLPAGNIE*CC*HSDQFFRSR*GWNPG*EGWDQPEHGCCYRRAAGQNRVTRRNDSEAQGVPGKL*EY*KEG*RSQTPT*DL*CSGFSSL*QQEPGEAKSSTGSAAGPRASGRLSEELYSGSGRRCPRWI*CFSTSPPS*GRPARVPRS*AKSEQWLCDDGKQAGGDWPVSLPGPRDVLSIGRPG**ARWHGCYWQRH**PPVPNRGCPAIP*QNSRPQIRHRGL*SRVSTYARRRGDSGFVRSQKGARSPEQTVWQTDREGESSSGTAGTDTRPCRGLLQEIERTQ*RDHSSRGGRGPPVGSGDRSGNHQPTISRF*NVSERTSGSSSDEIAAGEWTWPGINSECRKRL*CTGFRT*HGRDQCSMEYIE*KGRTKNCTATGSFVALWEVSRCLGAIAQLVGRYRGAHSQSETSIC*V*SGESTDPRTEVAPAAPR*SKGHSRHASSRRRQNSPVSRAG**RENHWTAGES*K*MD*TTQ*GSSQAKTAGRHPGSGQTVP*DS*AYF*LLICHREKAC*LRTCWHSDCQNTAADHSAQGSGRRHRKPCNRCAPGSQNWAVPLLPDISCRTGCAVRKDRLIAGPIQ*NSRPLLSEGSPT*PSSV*C*AVWGG*GGGAQLAG*G*GQAQFSVRKGFQTGCPAQAAC*PPGFK*RNC**KEECRSSY*KWSGSSKTNHR*GGVTYPGKTRWYKDSLRRHHSY*LQGPQNFRASPAAGHQVPVYL*GTDRVAEGGGGGAGNQWRTVSHRGTDTPVSAETEGIKEGGHGAQAGVGHSE*GEPCSLRAGALESQRRAG*TCVRC*RAVQTSQ*HYWTKGG*N*CCYSEITTV*ASCRCRTSLGC*NKTETDGSGSNSPGTGPDHSSASGTEGFLH*HYSTQRFNG*TLQSP**NLWHMWGGAKNCITGKDRVSNTAI*SH*PTQFRALCPPRAGPGLSKPVLGNL*RAQPLD*GNSGTNSTVTLSSH*S*AAQAATRGNEAIKGIYC*TQTSY*QTTKDRPTTKGIKP*GRGNGGRKIPESRKHVCPNKGGGAPASPGSG*SRVPVHTVS**N*AYVGDTGESFLSPAYATTDPC*SRQDQRVHQ*Q*ECHRGARKTAAIL*GLEAPWRGAYWTISGSRQGSGCKRNPG*IGSNGILLGGHQSSG*RTRNQIS*CP*ISREVLV*HGSSPDHHQRHPGYCP*LGKPRH*SFHHQTTG*SC*DY*GRDRWSA*RAGVYSDPWSRFDFCLWRN*EA*SEEEH**DE*CLGELKQNMEREARKT*GCYASCCAVSGHSSGYV*LAR*HCD*TLHHAPCWH*PQYC*RSVK*NEGVQSRSLPTAN*DGEA*SPG*TDVKESY**DGQRHYTRTTDRTQTPLGEPG*ENCPPTAQTRRGSVGPWSVPACLRGTNELADSYRRVVRCSETNKWRPKSH*S*ARKAPCPKK*CFGSSSHSGNSQQSWQ*AS*IQCWR*CQQLKEPFGSHEPMLGVSVTENRGEGAAASVNSAAGPGLPQ*N*RFPLGTY*NGEPAFCI*AHRRTS*NC*GTA*YTYGTLFPAESQGRDL*STT*QGQTHASKP*RLWVWLQDRTECSTFGAEVACGQQ*DGRKKVKAGRGPQLGNRIPEFPTRIYQLAHSSRAEFKHRFSTKPDSKYCPFPDRRAQGFC**SKCSSRPDH*AGSNWESIKVP*PKAGCCSDQEFVGERAVSMGEGCPAIY*KRAITR*CQEAGKTIP*SLEKTD*LARRCRESPGLRTRDIQ*PRQN*TSAF*A*GVSEDSWWQAACV*YHN*NWQSTERKDFASRR*SET*QFPRRSQRQMGYCLWQVCGAAAQVGGSPALFGSVHGCFAGIG*LVIQGGATAG*GPARARGP*PRHEPHGCTQGFPEGTGKANRNRSGPEAVRPRAD*E*SR*HHLGKRTAPGTEHSLGHCL*TLCFQTKPA*AGLKTSGSVSRHSPHAVGVAF*SRANASLSGSTS**HRGPAVSH*HP*GIHEESRRKASGR*LSSSHGRSHPGCLPPRLHHNHQTLDHHHPSSLRGGPDMG*AAPAAS*NGLVRTGG*C*APGRTSGMDPVG*DHPHSAGSGANPAEH*PS*SPYR*ASDIYGGDDSQTA*RGPGHQDIQKEKHRAYSRAFHREIPQRRQEIPKSANPSSHANPFTV*SKKPTDQPAFCPLAAGVAVSTGAAKETE*CLGSAGGVERICQL*L*CLEEKVYALDESQKVSSDGFLPAH**GPGWEDNTSGVYRWHFSIQVPHHQVRDDCCG*HFRPRWGWLH*LL*ICGCSSSQQGCVSTNNRCR*NRR*GYKTSGSVQMCKKVSGGADRRE*IPVLPRQSVWGFSAVAAGPYSAQHRDGSRWWRMDGLG*IFSEK*SLPSSPSWE*NKAL*FQLFDFQSVSHSTR*N*H*T*REIHPTRGSIPGNDPLPLTGSKVQTIFPGSFPYSFQLQC*SE*PQLYIHAIFSSHPSQWNQDFTSVLSLL*QTLVGKQ*SWHPYQGQPFS*PPAAHPRGYPIIR*QVETTNTNFSF*SDIPCW*YQQ*FFPGLHRCQN*SGRP*KVCQSPWESGWESSRESSQQPARK*RF*L*PLRDAVCLFRHFRKQRCRGPRQLQERAKQTFQNPNHV*EDHHCLPQDSRSQAI FALSE TRUE hsa-mir-4677 chr1:243346176-243346255:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32166 COPA::DEDD ENSG00000122218.17::ENSG00000158796.17 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160294484:- chr1:160258384-160313356:- chr1:160264274:- DEDD ENSG00000158796.17 protein_coding - - chr1:161120974-161132688:- chr1:161130847:- chr1:161090764-161102478:- chr1:161100637:- chr1:160294361,chr1:160294361,chr1:160294366,chr1:160294373,chr1:160294371 chr1:161132148,chr1:161132146,chr1:161132150,chr1:161132151,chr1:161132150 NA NA chr1:160264151,chr1:160264151,chr1:160264156,chr1:160264163,chr1:160264161 chr1:161101938,chr1:161101936,chr1:161101940,chr1:161101941,chr1:161101940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.78Mb] 679 312 679 312 ONLY_REF_SPLICE YES_LDAS 11.2504 GT 1.7465 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32169 AKT3::MYCL ENSG00000117020.19::ENSG00000116990.12 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1847 TRUE 3388 FALSE NA AKT3 ENSG00000117020.19 protein_coding - - chr1:243488233-243851079:- chr1:243545510:- chr1:243651535-244014381:- chr1:243708812:- MYCL ENSG00000116990.12 protein_coding - - chr1:39895428-39902256:- chr1:39897970:- chr1:40361100-40367928:- chr1:40363642:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PH_20|5-74|6.8e-07^PH|7-105|1.9e-20^PH_11|8-103|0.00014^Pkinase|84-119|2.9^FTA2|142-183|0.00035^Pkinase|150-405|9.4e-83^PK_Tyr_Ser-Thr|151-388|1.8e-39^Kinase-like|152-178|0.41^PH|216-227|6.7^ABC1|223-295|3.3e-05^FTA2|253-279|0.0067^Kinase-like|255-384|4.1e-11^PH_11|342-359|4.4^Pkinase_C|426-473|7.7e-14 none ["AKT3:Oncogene","AKT3:FoundationOne_panel","AKT3:ArcherDX_panel"];["MYCL:FoundationOne_panel","MYCL:ArcherDX_panel","MYCL:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:203.59Mb] 87 43 83.49 17.16 ONLY_REF_SPLICE YES_LDAS 1.1426 GT 1.4566 AG 1.4566 ENST00000263826.12 1-1251 ENST00000397332.3 587-1185 chr1|-|[2]243545510-243545597[2]|[1]243552729-243552943[0]|[2]243563720-243563848[0]|[2]243572926-243573048[0]|[2]243613671-243613739[0]|[2]243615096-243615161[0]|[2]243637611-243637742[0]|[2]243645893-243646037[2]|[1]243664772-243664883[1]|[0]243695591-243695716[1]|[0]243843125-243843170[0]<==>chr1|-|[2]39897372-39897970[1] atgagcgatgttaccattgtgaaagaaggttgggttcagaagaggggagaatatataaaaaactggaggccaagatacttccttttgaagacagatggctcattcataggatataaagagaaacctcaagatgtggatttaccttatcccctcaacaacttttcagtggcaaaatgccagttaatgaaaacagaacgaccaaagccaaacacatttataatcagatgtctccagtggactactgttatagagagaacatttcatgtagatactccagaggaaagggaagaatggacagaagctatccaggctgtagcagacagactgcagaggcaagaagaggagagaatgaattgtagtccaacttcacaaattgataatataggagaggaagagatggatgcctctacaacccatcataaaagaaagacaatgaatgattttgactatttgaaactactaggtaaaggcacttttgggaaagttattttggttcgagagaaggcaagtggaaaatactatgctatgaagattctgaagaaagaagtcattattgcaaaggatgaagtggcacacactctaactgaaagcagagtattaaagaacactagacatccctttttaacatccttgaaatattccttccagacaaaagaccgtttgtgttttgtgatggaatatgttaatgggggcgagctgtttttccatttgtcgagagagcgggtgttctctgaggaccgcacacgtttctatggtgcagaaattgtctctgccttggactatctacattccggaaagattgtgtaccgtgatctcaagttggagaatctaatgctggacaaagatggccacataaaaattacagattttggactttgcaaagaagggatcacagatgcagccaccatgaagacattctgtggcactccagaatatctggcaccagaggtgttagaagataatgactatggccgagcagtagactggtggggcctaggggttgtcatgtatgaaatgatgtgtgggaggttacctttctacaaccaggaccatgagaaactttttgaattaatattaatggaagacattaaatttcctcgaacactctcttcagatgcaaaatcattgctttcagggctcttgataaaggatccaaataaacgccttggtggaggaccagatgatgcaaaagaaattatgagacacagtttcttctctggagtaaactggcaagatgtatatgataaaaagAGAATGAAGAAATTGATGTTGTGACAGTAGAGAAGAGGCAGTCTCTGGGTATTCGGAAGCCGGTCACCATCACGGTGCGAGCAGACCCCCTGGATCCCTGCATGAAGCATTTCCACATCTCCATCCATCAGCAACAGCACAACTATGCTGCCCGTTTTCCTCCAGAAAGCTGCTCCCAAGAAGAGGCTTCAGAGAGGGGTCCCCAAGAAGAGGTTCTGGAGAGAGATGCTGCAGGGGAAAAGGAAGATGAGGAGGATGAAGAGATTGTGAGTCCCCCACCTGTAGAAAGTGAGGCTGCCCAGTCCTGCCACCCCAAACCTGTCAGTTCTGATACTGAGGATGTGACCAAGAGGAAGAATCACAACTTCCTGGAGCGCAAGAGGCGGAATGACCTGCGTTCGCGATTCTTGGCGCTGAGGGACCAGGTGCCCACCCTGGCCAGCTGCTCCAAGGCCCCCAAAGTAGTGATCCTAAGCAAGGCCTTGGAATACTTGCAAGCCCTGGTGGGGGCTGAGAAGAGGATGGCTACAGAGAAAAGACAGCTCCGATGCCGGCAGCAGCAGTTGCAGAAAAGAATTGCATACCTCACTGGCTACTAA MSDVTIVKEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERPKPNTFIIRCLQWTTVIERTFHVDTPEEREEWTEAIQAVADRLQRQEEERMNCSPTSQIDNIGEEEMDASTTHHKRKTMNDFDYLKLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDIKFPRTLSSDAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFSGVNWQDVYDKKRMKKLML*Q*RRGSLWVFGSRSPSRCEQTPWIPA*SISTSPSISNSTTMLPVFLQKAAPKKRLQRGVPKKRFWREMLQGKRKMRRMKRL*VPHL*KVRLPSPATPNLSVLILRM*PRGRITTSWSARGGMTCVRDSWR*GTRCPPWPAAPRPPK**S*ARPWNTCKPWWGLRRGWLQRKDSSDAGSSSCRKELHTSLAT FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE RAC-gamma serine/threonine-protein kinase AGC Akt Q9Y243 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-akt murine thymoma viral oncogene homolog 3 2 GBM other oncogene amplification TRUE v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog 1 small cell lung carcinoma epithelial oncogene amplification 32170 CYRIB::ASAP1 ENSG00000153310.22::ENSG00000153317.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1834 FALSE NA FALSE NA CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129871375:- chr8:130851839-131029750:- chr8:130883621:- ASAP1 ENSG00000153317.15 protein_coding - - chr8:130052104-130443674:- chr8:130137038:- chr8:131064350-131455920:- chr8:131149284:- chr8:129869175,chr8:129869179,chr8:129869181 chr8:130149231,chr8:130149232,chr8:130149232 NA NA chr8:130881421,chr8:130881425,chr8:130881427 chr8:131161477,chr8:131161478,chr8:131161478 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CYRIA-B_Rac1-bd|18-93|1.5e-31^Adeno_L433K_22K|21-61|4.8e-06 SH3_2|892-945|2.3e-10^SH3_1|894-940|2.2e-12^SH3_9|895-944|4.5e-13 none 76 60 76 60 ONLY_REF_SPLICE YES_LDAS 1.544 GT 1.7465 AG 1.8323 ENST00000523993.5 1-195 ENST00000524124.5 542-2851 chr8|-|[2]129871375-129871496[1]|[0]129879389-129879461[0]<==>chr8|-|[2]130054731-130054805[0]|[2]130057954-130058076[0]|[2]130060579-130061069[1]|[0]130076348-130076406[2]|[1]130079902-130079971[1]|[0]130091973-130092143[1]|[0]130112094-130112322[0]|[2]130115628-130115735[0]|[2]130116678-130116745[1]|[0]130116880-130116995[2]|[1]130118161-130118246[0]|[2]130118489-130118675[2]|[1]130124013-130124104[0]|[2]130125956-130126089[1]|[0]130127927-130128090[2]|[1]130134296-130134344[1]|[0]130136951-130137038[0] atggggaatcttcttaaagttttgacatgcacagaccttgagcaggggccaaattttttccttgattttgaaaatgcccagcctacagagtctgagaaggaaatttataatcaggtgaatgtagtattaaaagatgcagaaggcatcttggaggacttgcagtcatacagaggagctggccacgaaatacgagagTCTAACAGGCAACCAGCCAAGTTGAACCTTCTCACCTGCCAAGTAAAACCTAATGCCGAAGACAAAAAATCTTTTGACCTGATATCACATAATAGAACATATCACTTTCAGGCAGAAGATGAGCAGGATTATGTAGCATGGATATCAGTATTGACAAATAGCAAAGAAGAGGCCCTAACCATGGCCTTCCGTGGAGAGCAGAGTGCGGGAGAGAACAGCCTGGAAGACCTGACAAAAGCCATTATTGAGGATGTCCAGCGGCTCCCAGGGAATGACATTTGCTGCGATTGTGGCTCATCAGAACCCACCTGGCTTTCAACCAACTTGGGTATTTTGACCTGTATAGAATGTTCTGGCATCCATAGGGAAATGGGGGTTCATATTTCTCGCATTCAGTCTTTGGAACTAGACAAATTAGGAACTTCTGAACTCTTGCTGGCCAAGAATGTAGGAAACAATAGTTTTAATGATATTATGGAAGCAAATTTACCCAGCCCCTCACCAAAACCCACCCCTTCAAGTGATATGACTGTACGAAAAGAATATATCACTGCAAAGTATGTAGATCATAGGTTTTCAAGGAAGACCTGTTCAACTTCATCAGCTAAACTAAATGAATTGCTTGAGGCCATCAAATCCAGGGATTTACTTGCACTAATTCAAGTCTATGCAGAAGGGGTAGAGCTAATGGAACCACTGCTGGAACCTGGGCAGGAGCTTGGGGAGACAGCCCTTCACCTTGCCGTCCGAACTGCAGATCAGACATCTCTCCATTTGGTTGACTTCCTTGTACAAAACTGTGGGAACCTGGATAAGCAGACGGCCCTGGGAAACACAGTTCTACACTACTGTAGTATGTACAGTAAACCTGAGTGTTTGAAGCTTTTGCTCAGGAGCAAGCCCACTGTGGATATAGTTAACCAGGCTGGAGAAACTGCCCTAGACATAGCAAAGAGACTAAAAGCTACCCAGTGTGAAGATCTGCTTTCCCAGGCTAAATCTGGAAAGTTCAATCCACACGTCCACGTAGAATATGAGTGGAATCTTCGACAGGAGGAGATAGATGAGAGCGATGATGATCTGGATGACAAACCAAGCCCTATCAAGAAAGAGCGCTCACCCAGACCTCAGAGCTTCTGCCACTCCTCCAGCATCTCCCCCCAGGACAAGCTGGCACTGCCAGGATTCAGCACTCCAAGGGACAAACAGCGGCTCTCCTATGGAGCCTTCACCAACCAGATCTTCGTTTCCACAAGCACAGACTCGCCCACATCACCAACCACGGAGGCTCCCCCTCTGCCTCCTAGGAACGCCGGGAAAGGTCCAACTGGCCCACCTTCAACACTCCCTCTAAGCACCCAGACCTCTAGTGGCAGCTCCACCCTATCCAAGAAGAGGCCTCCTCCCCCACCACCCGGACACAAGAGAACCCTATCCGACCCTCCCAGCCCACTACCTCATGGGCCCCCAAACAAAGGCGCAGTTCCTTGGGGTAACGATGGGGGTCCATCCTCTTCAAGTAAGACTACAAACAAGTTTGAGGGACTATCCCAGCAGTCGAGCACCAGTTCTGCAAAGACTGCCCTTGGCCCAAGAGTTCTTCCTAAACTACCTCAGAAAGTGGCACTAAGGAAAACAGATCATCTCTCCCTAGACAAAGCCACCATCCCGCCCGAAATCTTTCAGAAATCATCACAGTTGGCAGAGTTGCCACAAAAGCCACCACCTGGAGACCTGCCCCCAAAGCCCACAGAACTGGCCCCCAAGCCCCAAATTGGAGATTTGCCGCCTAAGCCAGGAGAACTGCCCCCCAAACCACAGCTGGGGGACCTGCCACCCAAACCCCAACTCTCAGACTTACCTCCCAAACCACAGATGAAGGACCTGCCCCCCAAACCACAGCTGGGAGACCTGCTAGCAAAATCCCAGACTGGAGATGTCTCACCCAAGGCTCAGCAACCCTCTGAGGTCACACTGAAGTCACACCCATTGGATCTATCCCCAAATGTGCAGTCCAGAGACGCCATCCAAAAGCAAGCATCTGAAGACTCCAACGACCTCACGCCTACTCTGCCAGAGACGCCCGTACCACTGCCCAGAAAAATCAATACGGGGAAAAATAAAGTGAGGCGAGTGAAGACCATTTATGACTGCCAGGCAGACAACGATGACGAGCTCACATTCATCGAGGGAGAAGTGATTATCGTCACAGGGGAAGAGGACCAGGAGTGGTGGATTGGCCACATCGAAGGACAGCCTGAAAGGAAGGGGGTCTTTCCAGTGTCCTTTGTTCATATCCTGTCTGACTAG MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIRESNRQPAKLNLLTCQVKPNAEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAFRGEQSAGENSLEDLTKAIIEDVQRLPGNDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELDKLGTSELLLAKNVGNNSFNDIMEANLPSPSPKPTPSSDMTVRKEYITAKYVDHRFSRKTCSTSSAKLNELLEAIKSRDLLALIQVYAEGVELMEPLLEPGQELGETALHLAVRTADQTSLHLVDFLVQNCGNLDKQTALGNTVLHYCSMYSKPECLKLLLRSKPTVDIVNQAGETALDIAKRLKATQCEDLLSQAKSGKFNPHVHVEYEWNLRQEEIDESDDDLDDKPSPIKKERSPRPQSFCHSSSISPQDKLALPGFSTPRDKQRLSYGAFTNQIFVSTSTDSPTSPTTEAPPLPPRNAGKGPTGPPSTLPLSTQTSSGSSTLSKKRPPPPPPGHKRTLSDPPSPLPHGPPNKGAVPWGNDGGPSSSSKTTNKFEGLSQQSSTSSAKTALGPRVLPKLPQKVALRKTDHLSLDKATIPPEIFQKSSQLAELPQKPPPGDLPPKPTELAPKPQIGDLPPKPGELPPKPQLGDLPPKPQLSDLPPKPQMKDLPPKPQLGDLLAKSQTGDVSPKAQQPSEVTLKSHPLDLSPNVQSRDAIQKQASEDSNDLTPTLPETPVPLPRKINTGKNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD* FALSE TRUE hsa-mir-5194 chr8:130008334-130008453:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32171 UBFD1::SCNN1B ENSG00000103353.16::ENSG00000168447.11 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1835 TRUE 3378 TRUE 1276 UBFD1 ENSG00000103353.16 protein_coding + + chr16:23557721-23574389:+ chr16:23562730:+ chr16:23569042-23585710:+ chr16:23574051:+ SCNN1B ENSG00000168447.11 protein_coding + + chr16:23278231-23381294:+ chr16:23348592:+ chr16:23289552-23392615:+ chr16:23359913:+ chr16:23565291,chr16:23565324,chr16:23565318 chr16:23330800,chr16:23330807,chr16:23330798 NA NA chr16:23576612,chr16:23576645,chr16:23576639 chr16:23342121,chr16:23342128,chr16:23342119 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ubiquitin_2|86-130|2.1e-08^ubiquitin|90-156|4.8e-18^Ubiquitin_5|95-153|3.2e-05 ASC-PARTIAL|~128-587|3e-117 ["SCNN1B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.18Mb] 65 55 65 40.17 ONLY_REF_SPLICE YES_LDAS 1.1939 GT 1.9086 AG 1.9656 ENST00000395878.8 1-736 ENST00000307331.9 128-2058 chr16|+|[0]23557743-23557767[0]|[1]23557950-23558279[0]|[1]23559468-23559676[2]|[0]23562206-23562271[2]|[0]23562625-23562730[0]<==>chr16|+|[1]23348592-23348910[1]|[2]23352801-23353074[2]|[0]23355299-23355489[1]|[2]23367856-23367959[0]|[1]23371299-23371462[2]|[0]23371776-23371883[2]|[0]23375738-23375855[0]|[1]23377165-23377240[1]|[2]23377329-23377386[2]|[0]23378706-23378767[1]|[2]23380094-23380169[2]|[0]23380421-23380801[2] atggcggcggccggggccccggatggcatggaggaacctggcatggacacggaggccgagactgtggctactgaggctcccgcgcggcccgtcaactgcctggaggctgaagccgcggcgggggcggcggccgaggactccggcgccgcacgaggcagcctgcagccggccccggcccagccccctggggaccccgcagcccaggcctcggtcagcaacggcgaagacgcgggcggcggcgcgggcagggagctggtggacttgaagatcatctggaataagaccaagcatgacgtgaagttccccctggacagcacaggctccgagctgaaacagaagatccactcgattacaggtctcccgcctgccatgcagaaagtcatgtataagggactcgtccccgaggataaaacattgagagaaataaaagtgaccagtggggccaagatcatggtggttggctccaccatcaatgatgttttagcagtaaacacacccaaagatgctgcgcagcaggatgcaaaggccgaagagaacaagaaggagcctctctgcaggcagaaacaacacaggaaagtgttggataaaggaaaacctgaagatgtgatgccatctgttaagggggcccaggagcgcctgccaacggtaccgctgtccggcatgtacaataaatctggaggaaaagtgagactcacctttaaactagaacaagaccagctgtggattggcactaaagGTGCCACTATGCACGTGAAGAAGTACCTGCTGAAGGGCCTGCATCGGCTGCAGAAGGGCCCCGGCTACACGTACAAGGAGCTGCTGGTGTGGTACTGCGACAACACCAACACCCACGGCCCCAAGCGCATCATCTGTGAGGGGCCCAAGAAGAAAGCCATGTGGTTCCTGCTCACCCTGCTCTTCGCCGCCCTCGTCTGCTGGCAGTGGGGCATCTTCATCAGGACCTACTTGAGCTGGGAGGTCAGCGTCTCCCTCTCCGTAGGCTTCAAGACCATGGACTTCCCTGCCGTCACCATCTGCAATGCTAGCCCCTTCAAGTATTCCAAAATCAAGCATTTGCTGAAGGACCTGGATGAGCTGATGGAAGCTGTCCTGGAGAGAATCCTGGCTCCTGAGCTAAGCCATGCCAATGCCACCAGGAACCTGAACTTCTCCATCTGGAACCACACACCCCTGGTCCTTATTGATGAACGGAACCCCCACCACCCCATGGTCCTTGATCTCTTTGGAGACAACCACAATGGCTTAACAAGCAGCTCAGCATCAGAAAAGATCTGTAATGCCCACGGGTGCAAAATGGCCATGAGACTATGTAGCCTCAACAGGACCCAGTGTACCTTCCGGAACTTCACCAGTGCTACCCAGGCATTGACAGAGTGGTACATCCTGCAGGCCACCAACATCTTTGCACAGGTGCCACAGCAGGAGCTAGTAGAGATGAGCTACCCCGGCGAGCAGATGATCCTGGCCTGCCTATTCGGAGCTGAGCCCTGCAACTACCGGAACTTCACGTCCATCTTCTACCCTCACTATGGCAACTGTTACATCTTCAACTGGGGCATGACAGAGAAGGCACTTCCTTCGGCCAACCCTGGAACTGAATTCGGCCTGAAGTTGATCCTGGACATAGGCCAGGAAGACTACGTCCCCTTCCTTGCGTCCACGGCCGGGGTCAGGCTGATGCTTCACGAGCAGAGGTCATACCCCTTCATCAGAGATGAGGGCATCTACGCCATGTCGGGGACAGAGACGTCCATCGGGGTACTCGTGGACAAGCTTCAGCGCATGGGGGAGCCCTACAGCCCGTGCACCGTGAATGGTTCTGAGGTCCCCGTCCAAAACTTCTACAGTGACTACAACACGACCTACTCCATCCAGGCCTGTCTTCGCTCCTGCTTCCAAGACCACATGATCCGTAACTGCAACTGTGGCCACTACCTGTACCCACTGCCCCGTGGGGAGAAATACTGCAACAACCGGGACTTCCCAGACTGGGCCCATTGCTACTCAGATCTACAGATGAGCGTGGCGCAGAGAGAGACCTGCATTGGCATGTGCAAGGAGTCCTGCAATGACACCCAGTACAAGATGACCATCTCCATGGCTGACTGGCCTTCTGAGGCCTCCGAGGACTGGATTTTCCACGTCTTGTCTCAGGAGCGGGACCAAAGCACCAATATCACCCTGAGCAGGAAGGGAATTGTCAAGCTCAACATCTACTTCCAAGAATTTAACTATCGCACCATTGAAGAATCAGCAGCCAATAACATCGTCTGGCTGCTCTCGAATCTGGGTGGCCAGTTTGGCTTCTGGATGGGGGGCTCTGTGCTGTGCCTCATCGAGTTTGGGGAGATCATCATCGACTTTGTGTGGATCACCATCATCAAGCTGGTGGCCTTGGCCAAGAGCCTACGGCAGCGGCGAGCCCAAGCCAGCTACGCTGGCCCACCGCCCACCGTGGCCGAGCTGGTGGAGGCCCACACCAACTTTGGCTTCCAGCCTGACACGGCCCCCCGCAGCCCCAACACTGGGCCCTACCCCAGTGAGCAGGCCCTGCCCATCCCAGGCACCCCGCCCCCCAACTATGACTCCCTGCGTCTGCAGCCGCTGGACGTCATCGAGTCTGACAGTGAGGGTGATGCCATCTAA MAAAGAPDGMEEPGMDTEAETVATEAPARPVNCLEAEAAAGAAAEDSGAARGSLQPAPAQPPGDPAAQASVSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVVGSTINDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTKGATMHVKKYLLKGLHRLQKGPGYTYKELLVWYCDNTNTHGPKRIICEGPKKKAMWFLLTLLFAALVCWQWGIFIRTYLSWEVSVSLSVGFKTMDFPAVTICNASPFKYSKIKHLLKDLDELMEAVLERILAPELSHANATRNLNFSIWNHTPLVLIDERNPHHPMVLDLFGDNHNGLTSSSASEKICNAHGCKMAMRLCSLNRTQCTFRNFTSATQALTEWYILQATNIFAQVPQQELVEMSYPGEQMILACLFGAEPCNYRNFTSIFYPHYGNCYIFNWGMTEKALPSANPGTEFGLKLILDIGQEDYVPFLASTAGVRLMLHEQRSYPFIRDEGIYAMSGTETSIGVLVDKLQRMGEPYSPCTVNGSEVPVQNFYSDYNTTYSIQACLRSCFQDHMIRNCNCGHYLYPLPRGEKYCNNRDFPDWAHCYSDLQMSVAQRETCIGMCKESCNDTQYKMTISMADWPSEASEDWIFHVLSQERDQSTNITLSRKGIVKLNIYFQEFNYRTIEESAANNIVWLLSNLGGQFGFWMGGSVLCLIEFGEIIIDFVWITIIKLVALAKSLRQRRAQASYAGPPPTVAELVEAHTNFGFQPDTAPRSPNTGPYPSEQALPIPGTPPPNYDSLRLQPLDVIESDSEGDAI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32172 LINC02774::VANGL2 ENSG00000226828.2::ENSG00000162738.7 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1836 FALSE NA FALSE NA LINC02774 ENSG00000226828.2 lncRNA + + chr1:243917402-244047317:+ chr1:243917526:+ chr1:244080704-244210619:+ chr1:244080828:+ VANGL2 ENSG00000162738.7 protein_coding + + chr1:160400564-160428670:+ chr1:160415648:+ chr1:160370354-160398460:+ chr1:160385438:+ chr1:243947832,chr1:243947825,chr1:243947805,chr1:243947822,chr1:243947814,chr1:243947821,chr1:243947815,chr1:243947832,chr1:243947832,chr1:243947830,chr1:243947825,chr1:243947831,chr1:243947830 chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412069,chr1:160412073,chr1:160412074,chr1:160412064,chr1:160412064,chr1:160412067,chr1:160412067 NA NA chr1:244111134,chr1:244111127,chr1:244111107,chr1:244111124,chr1:244111116,chr1:244111123,chr1:244111117,chr1:244111134,chr1:244111134,chr1:244111132,chr1:244111127,chr1:244111133,chr1:244111132 chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381859,chr1:160381863,chr1:160381864,chr1:160381854,chr1:160381854,chr1:160381857,chr1:160381857 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 47 40 47 40 ONLY_REF_SPLICE YES_LDAS 0.9877 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32174 PABPN1::CHD8 ENSG00000100836.11::ENSG00000100888.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1837 FALSE NA FALSE NA PABPN1 ENSG00000100836.11 protein_coding + + chr14:23321457-23326163:+ chr14:23323066:+ chr14:23790666-23795372:+ chr14:23792275:+ CHD8 ENSG00000100888.15 protein_coding - - chr14:21385194-21456126:- chr14:21428254:- chr14:21853353-21924285:- chr14:21896413:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Seryl_tRNA_N|118-154|7.1e-06^RRM_1|174-243|1e-18 Helicase_C-PARTIAL|~1216-1247|1.1e-25^HDA2-3-PARTIAL|~1216-1265|1.9e-07^CHDCT2|1452-1470|0.058^CHDCT2|1625-1659|0.0035^Myb_DNA-bind_7|1791-1817|2e-05^CHDCT2|1928-1966|0.061^BRK|2310-2352|4.7e-19^SelP_N|2491-2509|0.011 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:1.87Mb] 37 34 37 34 ONLY_REF_SPLICE YES_LDAS 0.806 GT 1.8892 AG 1.8892 ENST00000397276.6 1-534 ENST00000646647.2 1216-7746 chr14|+|[0]23321470-23321820[2]|[0]23322181-23322295[0]|[1]23322999-23323066[2]<==>chr14|-|[2]21385613-21386176[0]|[2]21390947-21391063[0]|[2]21391463-21391642[0]|[2]21391833-21391946[0]|[2]21392507-21392809[0]|[2]21393106-21393254[1]|[0]21393476-21394195[1]|[0]21394277-21394485[2]|[1]21394912-21395119[1]|[0]21395298-21395352[0]|[2]21395817-21395892[2]|[1]21397823-21397952[1]|[0]21399602-21399705[2]|[1]21399981-21400070[2]|[1]21400151-21400307[1]|[0]21400413-21400612[2]|[1]21400875-21401071[0]|[2]21401403-21401513[0]|[2]21401957-21402136[0]|[2]21402336-21402503[0]|[2]21403017-21403212[2]|[1]21403453-21403663[1]|[0]21405209-21405464[0]|[2]21405721-21405864[0]|[2]21406856-21407032[0]|[2]21408312-21408555[2]|[1]21408704-21408825[0]|[2]21409851-21409988[0]|[2]21412913-21412996[0]|[2]21414301-21414418[2]|[1]21414938-21414993[0]|[2]21415574-21415642[0]|[2]21415725-21415907[0]|[2]21426128-21426242[2]|[1]21427869-21428254[0] atggcggcggcggcggcggcggcagcagcagcgggggctgcgggcggtcggggctccgggccggggcggcggcgccatcttgtgcccggggccggtggggaggccggggagggggccccggggggcgcaggggactacgggaacggcctggagtctgaggaactggagcctgaggagctgctgctggagcccgagccggagcccgagcccgaagaggagccgccccggccccgcgcccccccgggagctccgggccctgggcctggttcgggagcccccggcagccaagaggaggaggaggagccgggactggtcgagggtgacccgggggacggcgccattgaggacccggagctggaagctatcaaagctcgagtcagggagatggaggaagaagctgagaagctaaaggagctacagaacgaggtagagaagcagatgaatatgagtccacctccaggcaatgctggcccggtgatcatgtccattgaggagaagatggaggctgatgcccgttccatctatgttggcaatGCTGGCTCTTCCCAAGGGGCCTCTTCTGGGCTCTCTGTAGTTAAAGTTCTGAGTGCCAGTGAAGTGGCAGCTTTGTCATCACCAGCAAGCTCTGCTCCTCATTCGGGGGGAAAGACAGGAATGGAGGAAAACCGCAGATTGGAACACCAGAAGAAGCAAGAGAAAGCAAATCGGATTGTAGCAGAGGCCATTGCGAGAGCCCGTGCCCGCGGTGAGCAGAACATACCTCGAGTCTTAAATGAGGACGAGTTGCCCAGCGTTCGGCCAGAGGAGGAAGGCGAGAAGAAACGCAGGAAGAAGAGTGCTGGGGAGAGGCTGAAAGAGGAGAAGCCAAAGAAGAGTAAAACATCTGGTGCCTCCAAAACAAAGGGCAAGAGCAAGCTCAACACCATCACTCCTGTAGTGGGTAAGAAGAGAAAACGTAATACCTCATCTGATAATTCAGATGTGGAAGTCATGCCTGCACAGTCACCTCGAGAAGATGAAGAAAGCAGCATTCAGAAGAGACGCTCAAACCGCCAAGTTAAGCGAAAAAAATATACAGAGGACCTGGATATAAAGATCACAGATGATGAAGAAGAAGAAGAGGTGGATGTAACTGGTCCAATAAAACCTGAGCCTATCCTCCCTGAACCAGTGCAAGAACCAGATGGCGAGACTTTGCCTTCCATGCAGTTCTTTGTGGAGAATCCCAGTGAAGAAGATGCAGCCATTGTAGACAAAGTGCTTTCTATGCGGATTGTGAAGAAGGAGCTCCCTTCTGGACAATATACTGAAGCAGAAGAATTCTTTGTCAAGTACAAGAACTACTCCTATCTGCATTGTGAATGGGCTACTATCTCCCAACTAGAGAAGGATAAGAGGATACATCAAAAATTAAAGCGCTTCAAAACCAAAATGGCTCAGATGAGACACTTCTTCCATGAGGATGAAGAGCCCTTTAATCCAGACTACGTAGAGGTGGATAGGATATTGGATGAGTCTCACAGTATTGACAAGGACAATGGGGAGCCCGTTATTTACTACCTGGTGAAATGGTGCTCTCTGCCCTATGAGGATAGCACATGGGAGCTAAAAGAAGATGTTGATGAGGGCAAGATTCGAGAATTTAAACGGATTCAGTCAAGGCACCCAGAACTCAAAAGGGTGAATCGTCCGCAGGCAAGTGCCTGGAAGAAATTGGAGCTATCACATGAATATAAAAACAGAAACCAGCTACGGGAATATCAGTTGGAAGGGGTTAATTGGCTGCTCTTTAATTGGTATAACAGGCAGAACTGCATCCTGGCTGATGAGATGGGATTGGGCAAAACTATTCAGTCCATTGCCTTCTTGCAGGAAGTATATAATGTGGGCATCCATGGTCCCTTCTTGGTCATTGCCCCACTGTCCACAATTACTAACTGGGAGCGAGAATTTAATACATGGACAGAAATGAACACTATTGTGTACCATGGCAGTCTGGCCAGCAGGCAGATGATTCAACAGTATGAAATGTACTGCAAAGATTCACGGGGACGCCTCATCCCAGGCGCATACAAGTTTGACGCTCTGATCACCACTTTTGAGATGATTTTGTCAGATTGTCCTGAGCTTCGTGAAATTGAATGGCGTTGTGTTATCATTGATGAAGCCCATCGACTGAAAAACCGTAATTGCAAGCTGCTTGATAGTCTCAAGCACATGGACCTGGAACACAAGGTGCTACTCACAGGAACACCATTGCAAAATACTGTAGAAGAACTGTTTAGCTTGCTTCATTTCTTGGAACCGTCACAATTTCCCTCAGAATCAGAGTTTCTCAAGGACTTTGGGGATCTCAAGACAGAGGAACAGGTTCAAAAGCTACAGGCCATTCTTAAGCCAATGATGCTGAGAAGACTCAAAGAGGATGTTGAAAAAAACTTGGCACCCAAACAGGAAACAATTATTGAAGTAGAGCTGACTAATATCCAGAAGAAATACTATCGGGCTATTTTGGAGAAGAATTTCTCCTTCCTTTCCAAAGGGGCAGGTCATACCAACATGCCTAATCTACTTAACACAATGATGGAGTTGCGCAAGTGCTGCAACCACCCATATCTCATCAATGGTGCTGAAGAAAAAATCCTAACAGAATTCCGTGAAGCTTGCCATATTATACCTCATGACTTTCACCTGCAGGCCATGGTTCGTTCAGCCGGCAAACTGGTTCTTATTGACAAGTTGCTTCCAAAGCTTAAAGCTGGTGGCCATAAAGTTCTGATCTTCTCTCAGATGGTGCGCTGCCTAGACATCCTAGAGGATTATTTAATCCAGAGGAGGTACTTATATGAACGTATTGATGGGCGAGTTAGAGGCAACCTTCGACAGGCTGCCATTGACCGCTTCAGCAAGCCTGACTCAGACCGCTTTGTCTTCTTACTGTGTACCCGGGCTGGTGGACTTGGTATTAATCTTACAGCTGCTGATACCTGCATCATCTTTGATTCAGACTGGAATCCACAAAATGACCTGCAGGCCCAGGCACGATGTCATCGAATTGGGCAGAGCAAAGCTGTGAAGGTGTACCGCCTCATCACTCGTAATTCCTACGAGAGAGAGATGTTTGATAAGGCCAGCCTCAAGTTGGGGTTGGATAAGGCTGTGCTTCAATCCATGAGTGGTCGGGATGGCAACATTACTGGAATCCAACAGTTCTCTAAGAAGGAGATTGAAGATCTTTTAAGAAAAGGAGCATATGCAGCCATCATGGAGGAAGATGATGAAGGCTCCAAGTTTTGTGAAGAGGACATTGACCAGATCTTGTTAAGACGAACTACAACCATCACCATTGAATCTGAAGGAAAAGGTTCCACCTTTGCTAAGGCAAGCTTTGTTGCTTCTGAAAACAGGACAGATATTTCTTTGGATGACCCCAACTTTTGGCAAAAGTGGGCCAAAAAGGCTGACCTAGACATGGATCTGCTCAACAGCAAGAATAATTTGGTAATTGACACACCTAGAGTACGAAAACAAACGCGCCACTTTAGCACTCTGAAAGATGATGACCTGGTGGAATTCTCTGATTTGGAAAGTGAGGATGATGAGCGGCCACGCTCCCGCAGACATGACCGTCATCATGCCTATGGGCGCACTGACTGCTTTCGGGTGGAAAAGCATCTCCTGGTATATGGTTGGGGACGATGGCGAGATATTTTATCTCATGGACGCTTCAAGCGACGTATGACTGAACGAGATGTGGAGACCATTTGTCGGGCCATTCTCGTGTACTGTCTTCTACACTACCGTGGGGATGAAAATATTAAAGGCTTCATCTGGGACTTGATTAGCCCAGCTGAAAATGGCAAGACAAAAGAATTGCAGAATCATTCAGGTCTATCTATCCCTGTGCCTCGTGGACGCAAAGGAAAAAAAGTAAAGTCACAAAGCACTTTTGATATCCATAAGGCAGATTGGATCCGGAAATATAACCCTGACACTTTGTTCCAAGATGAAAGTTATAAGAAGCACTTGAAACATCAGTGTAACAAGGTACTGTTGCGGGTACGAATGCTATACTACCTGAGGCAGGAGGTTATTGGAGACCAAGCAGAAAAGGTGTTAGGGGGTGCGATTGCCAGTGAGATTGACATATGGTTCCCAGTAGTGGATCAACTGGAGGTTCCAACAACTTGGTGGGACAGTGAGGCTGACAAGTCGCTGCTCATTGGAGTCTTTAAACATGGCTATGAGAAATATAATACCATGAGGGCAGACCCAGCCTTATGTTTCCTAGAAAAGGCTGGCCGACCAGATGACAAAGCAATTGCAGCAGAACATCGAGTGTTGGATAACTTCTCTGACATAGTAGAAGGGGTTGACTTTGATAAAGATTGTGAAGATCCTGAATATAAACCACTCCAAGGTCCCCCAAAGGACCAAGATGATGAGGGTGATCCCTTGATGATGATGGATGAGGAGATCTCAGTGATTGATGGAGATGAAGCCCAGGTGACCCAACAGCCAGGCCATTTATTCTGGCCTCCGGGCTCTGCCCTAACAGCTAGGCTTCGGCGTCTAGTAACAGCGTATCAGCGCAGCTACAAGAGAGAACAAATGAAGATAGAGGCTGCAGAACGTGGGGACCGGCGAAGGCGGCGTTGTGAAGCAGCCTTCAAGCTGAAAGAAATTGCACGGCGGGAGAAACAACAACGATGGACAAGGCGTGAACAAACTGATTTTTATCGAGTGGTGTCTACGTTTGGTGTGGAATATGACCCTGACACCATGCAGTTCCATTGGGATCGCTTCCGCACTTTTGCTCGACTAGACAAAAAGACAGATGAAAGCCTTACCAAGTACTTCCATGGCTTTGTGGCCATGTGCCGCCAAGTATGCCGCCTTCCCCCAGCAGCTGGAGATGAACCCCCCGACCCTAACCTGTTCATTGAGCCCATCACTGAGGAGAGAGCCTCACGGACTCTCTACCGTATAGAATTGCTTCGGCGCTTACGGGAACAAGTTTTATGCCACCCCCTTTTGGAAGATCGGCTGGCATTGTGTCAGCCTCCTGGTCCTGAATTGCCCAAATGGTGGGAGCCTGTTCGGCATGATGGGGAGCTTCTAAGAGGGGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATGCAGAACCATCAAGCAGGAGCACCAGCTCCATCCTTGTCACGCTGCTCTACTCCACTGCTGCACCAGCAGTATACCTCACGCACTGCCTCACCACTGCCCCTGCGCCCAGATGCTCCTGTTGAAAAGTCACCCGAGGAGACAGCTACCCAGGTCCCCAGTCTGGAGAGTCTGACTTTAAAGCTAGAGCACGAGGTGGTGGCCAGGAGCCGACCAACCCCACAAGACTATGAGATGCGAGTATCCCCCTCTGATACTACCCCTCTGGTTTCCCGGAGTGTTCCACCAGTCAAACTGGAGGATGAGGATGATTCGGACTCTGAGCTGGACTTGAGCAAGCTGTCACCATCTTCTTCTTCTTCCTCATCCTCATCCAGCTCCAGCTCCAGCACTGATGAGAGTGAGGATGAGAAGGAAGAGAAGCTAACTGACCAGTCCCGCTCAAAGCTCTATGATGAAGAGAGTCTCCTGTCCCTCACTATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAACAAATGACCCCTGAGCTTCTGCTACTGCAGGAAAGACAAAGAGCCTCTGAGTGGCCCAAGGATCGTGTCCTGATAAACCGTATTGACCTCGTCTGCCAGGCTGTACTCTCAGGGAAGTGGCCTTCTAGCCGTAGGAGCCAGGAAATGGTAACAGGAGGAATTTTGGGGCCAGGCAACCACTTGCTAGACAGTCCCTCATTGACTCCTGGAGAATATGGTGACTCTCCAGTCCCCACACCACGAAGTAGTAGTGCAGCTTCCATGGCAGAGGAGGAAGCATCTGCAGTCAGCACAGCGGCAGCCCAGTTCACCAAACTTCGCCGAGGCATGGATGAAAAGGAGTTTACAGTTCAAATCAAAGATGAGGAAGGATTGAAGTTAACATTCCAGAAGCACAAGTTGATGGCGAATGGAGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGAAAGAAGCTAGTAGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAATCACCTTGATGTGGACCTGGAGACCCGGATCCCTGTCATCAATAAGGTGGATGGTACTTTGCTGGTGGGTGAGGATGCCCCTCGCCGGGCTGAACTGGAGATGTGGTTACAGGGTCATCCAGAGTTTGCTGTTGATCCCCGATTTCTAGCGTATATGGAGGATCGCAGAAAACAGAAGTGGCAAAGATGTAAAAAAAATAATAAGGCAGAATTGAACTGTTTGGGAATGGAACCAGTACAGACAGCTAACTCTAGAAATGGGAAAAAGGGTCATCACACTGAAACGGTGTTCAACCGGGTTTTGCCAGGGCCTATTGCACCAGAGAGCAGCAAGAAGCGGGCCCGTAGGATGCGACCAGACCTTTCTAAGATGATGGCCCTCATGCAGGGTGGAAGCACTGGGTCTCTATCTCTGCATAACACGTTCCAACACAGCAGTAGTGGCCTACAGTCTGTGTCATCTTTGGGTCACAGCAGTGCCACTTCTGCATCTTTGCCTTTTATGCCATTTGTGATGGGTGGTGCACCATCATCCCCTCATGTAGACTCCAGCACCATGCTTCATCACCACCACCACCACCCCCACCCCCACCATCACCACCATCACCATCCAGGCTTGAGAGCCCCTGGCTACCCCTCTTCACCAGTGACTACCGCCTCTGGTACTACCTTGCGGTTGCCACCACTGCAACCTGAGGAGGATGACGATGAGGATGAAGAAGATGATGATGACTTATCTCAGGGCTATGATAGCTCAGAAAGGGACTTCTCACTCATTGATGATCCTATGATGCCAGCTAACTCAGACTCCAGTGAAGATGCTGATGACTGA MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGLESEELEPEELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAPGSQEEEEEPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNAGSSQGASSGLSVVKVLSASEVAALSSPASSAPHSGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNPDYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDIVEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISVIDGDEAQVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGPELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVPSLESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTDQSRSKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMAEEEASAVSTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVMGDGHPLFHKKKGNRKKLVELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKAELNCLGMEPVQTANSRNGKKGHHTETVFNRVLPGPIAPESSKKRARRMRPDLSKMMALMQGGSTGSLSLHNTFQHSSSGLQSVSSLGHSSATSASLPFMPFVMGGAPSSPHVDSSTMLHHHHHHPHPHHHHHHHPGLRAPGYPSSPVTTASGTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDADD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32176 MGST3::PBX1 ENSG00000143198.13::ENSG00000185630.20 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1838 FALSE NA FALSE NA MGST3 ENSG00000143198.13 protein_coding + + chr1:165631213-165661796:+ chr1:165631293:+ chr1:165600450-165631033:+ chr1:165600530:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164792494:+ chr1:164524821-164868533:+ chr1:164761731:+ chr1:165631441,chr1:165631441 chr1:164643716,chr1:164643713 NA NA chr1:165600678,chr1:165600678 chr1:164612953,chr1:164612950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PBX1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr1:0.73Mb] 27 0 27 0 ONLY_REF_SPLICE YES_LDAS 0.3065 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 32178 COPA::PPIEL ENSG00000122218.17::ENSG00000291129.1 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA COPA ENSG00000122218.17 protein_coding - - chr1:160288594-160343566:- chr1:160305433:- chr1:160258384-160313356:- chr1:160275223:- PPIEL ENSG00000291129.1 lncRNA - - chr1:39522280-39559698:- chr1:39522505:- chr1:39987952-40025370:- chr1:39988177:- chr1:160302608 chr1:39523006 NA NA chr1:160272398 chr1:39988678 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr1:120.73Mb] 27 22 27 19.16 ONLY_REF_SPLICE YES_LDAS 0.524 GT 1.9329 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32180 UBFD1::SCNN1B ENSG00000103353.16::ENSG00000168447.11 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3378 TRUE 1276 UBFD1 ENSG00000103353.16 protein_coding + + chr16:23557721-23574389:+ chr16:23564089:+ chr16:23569042-23585710:+ chr16:23575410:+ SCNN1B ENSG00000168447.11 protein_coding + + chr16:23278231-23381294:+ chr16:23348592:+ chr16:23289552-23392615:+ chr16:23359913:+ chr16:23565291,chr16:23565324,chr16:23565318 chr16:23330800,chr16:23330807,chr16:23330798 NA NA chr16:23576612,chr16:23576645,chr16:23576639 chr16:23342121,chr16:23342128,chr16:23342119 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SCNN1B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.18Mb] 22 57 22 16.83 INCL_NON_REF_SPLICE YES_LDAS 0.4409 GT 1.9086 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32182 PPOX::LRRC52 ENSG00000143224.18::ENSG00000162763.4 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1840 FALSE NA FALSE NA PPOX ENSG00000143224.18 protein_coding + + chr1:161166056-161178013:+ chr1:161167234:+ chr1:161135846-161147803:+ chr1:161137024:+ LRRC52 ENSG00000162763.4 protein_coding + + chr1:165544000-165563957:+ chr1:165563505:+ chr1:165513237-165533194:+ chr1:165532742:+ chr1:161168567,chr1:161168568 chr1:165563162,chr1:165563157 NA NA chr1:161138357,chr1:161138358 chr1:165532399,chr1:165532394 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Thi4|4-41|4.7e-07^Pyr_redox_2|4-36|3.4e-05^GIDA|4-33|0.00011^HI0933_like|4-41|0.00012^DAO|5-40|1.2e-09^FAD_oxidored|5-42|4.7e-07^FAD_binding_2|5-41|2.4e-06^Lycopene_cycl|5-39|0.00012^Trp_halogenase|5-37|0.00016^NAD_binding_9|6-43|3.3e-05^NAD_binding_8|7-64|1.1e-14^Amino_oxidase|12-120|1.6e-20 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:4.37Mb] 18 14 18 10.49 ONLY_REF_SPLICE YES_LDAS 0.3234 GT 1.8062 AG 1.8892 ENST00000652473.1 1-222 ENST00000294818.2 623-942 chr1|+|[0]161166848-161166934[2]|[0]161167100-161167234[2]<==>chr1|+|[1]165563505-165563824[2] atgggccggaccgtggtcgtgctgggcggaggcatcagcggcttggccgccagttaccacctgagccgggccccctgcccccctaaggtggtcctagtggagagcagtgagcgtctgggaggctggattcgctccgttcgaggccctaatggtgctatctttgagcttggacctcggggaattaggccagcgggagccctaggggcccggaccttgctcctgATGATCTAAATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGCCGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAACACCCGCCACAAGTCGAGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCCGGCGGATTTTTCAAACCCAGACGAGCTCGGTCCAGGAGTTCCCTCAGCTTATTTAG MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLMI*MPHVWSPQS*QGGPSPGWGTHSDTCASRTWTTKTTSSCCSSASASSPRELWLPGSQVCVLCSTRTPATSRVKKMRTRPGLGWKSAGGFFKPRRARSRSSLSLF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32183 UNC80::MAP2 ENSG00000144406.19::ENSG00000078018.22 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1841 FALSE NA FALSE NA UNC80 ENSG00000144406.19 protein_coding + + chr2:209771832-209999300:+ chr2:209881094:+ chr2:210636556-210864024:+ chr2:210745818:+ MAP2 ENSG00000078018.22 protein_coding + + chr2:209424047-209734147:+ chr2:209692625:+ chr2:210288771-210598871:+ chr2:210557349:+ chr2:209887169 chr2:209692084 NA NA chr2:210751893 chr2:210556808 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame UNC80_N|17-235|6.8e-86^RIH_assoc|663-696|0.083^GRP|697-766|0.00061^RIH_assoc|809-878|0.00032^UNC80|1040-1071|3.5^UNC80|1170-1428|2.3e-141^UNC80|1427-1777|2.4e-195^UNC80_C|1822-2909|0 MAP2_projctn-PARTIAL|~455-1505|0^Tubulin-binding|1663-1691|4.5e-15^Tubulin-binding|1692-1722|4.2e-20^Tubulin-binding|1723-1752|4.3e-19^Tubulin-binding|1754-1785|5.4e-19^Tubulin-binding|1786-1803|0.0015 ["MAP2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.04Mb];LOCAL_REARRANGEMENT:+:[37875] 17 4 17 3.09 ONLY_REF_SPLICE YES_LDAS 0.2281 GT 1.9329 AG 1.8062 ENST00000439458.5 1-4116 ENST00000704357.1 455-5577 chr2|+|[0]209772073-209772164[1]|[2]209773094-209773142[2]|[0]209775889-209776045[0]|[1]209777258-209777559[2]|[0]209786066-209786189[0]|[1]209789532-209789605[2]|[0]209793720-209793859[1]|[2]209813580-209813841[2]|[0]209815257-209815391[2]|[0]209816909-209817125[0]|[1]209817812-209817952[0]|[1]209818993-209819261[2]|[0]209820311-209820679[2]|[0]209825907-209826053[2]|[0]209829232-209829379[0]|[1]209831443-209831591[2]|[0]209834002-209834168[1]|[2]209834912-209835010[1]|[2]209839222-209839436[0]|[1]209840542-209840648[2]|[0]209842350-209842446[0]|[1]209849451-209849623[2]|[0]209872758-209872970[2]|[0]209877954-209878089[0]|[1]209880961-209881094[2]<==>chr2|+|[1]209692625-209696350[0]|[1]209696542-209696748[0]|[1]209696917-209697051[0]|[1]209700277-209700338[2]|[0]209705580-209705727[0]|[1]209709914-209710254[2]|[0]209723595-209723687[2]|[0]209725709-209725790[0]|[1]209729850-209729962[2]|[0]209730182-209730397[2] atggtgaagaggaagagctccgagggccaggagcaggacggcggccgcggcatccccctgcccatccagaccttcctgtggcggcaaaccagtgcatttttgaggcccaaactggggaagcaatatgaagcttcttgtgtgtcctttgagcgagtgttggtagaaaacaagctgcatggcctctctccagctctctctgaagccatccagagcatttccagatgggaactggtgcaagctgctttgcctcatgtcctccactgcactgcaaccctgctttcaaaccgaaacaagctaggccaccaggataaattgggtgttgctgagacaaagctccttcacactctacactggatgcttctggaggccccccaggactgcaacaatgagcggtttgggggtacagaccgaggctccagctggggtggaagcagcagtgctttcatccaccaggttgaaaaccagggttctccagggcagccttgccaaagcagctctaatgacgaagaagagaacaaccgaagaaagatcttccagaactccatggctactgtggagctcttcgtgtttctgtttgctcccctggtacacaggatcaaggaatctgacctcaccttccgtctggccagtgggcttgttatatggcagcccatgtgggaacacagacagcccggagtctctggctttaccgcactggtgaagcccatcaggaacatcattacagctaagagaagttctcctatcaacagtcaaagccggacctgtgaatcaccaaatcaagatgcaagacacttagagggactccaggtggtttgtgaaacattccagtctgattccatctcacccaaggccaccatttcaggctgtcaccgaggaaactcctttgatggaagtctgtcctcccaaacttcccaggaaagaggcccatcacattccagggcctctcttgtgatacctccgtgccaaaggtcccgctatgccacctactttgacgttgctgttctgcgctgcctacttcagccccattggtctgaggaaggcactcagtggtctctgatgtactatctacaaaggctgcgacacatgttggaagagaagccagaaaagcctccggagccagatattcctctcctgcccagacccaggagtagctccatggtggcagcagctccctcactagtgaacacccacaaaacccaagatctcaccatgaagtgtaacgaggaggaaaaatctcttagctctgaggccttttccaaggtttcactgaccaatctgcgtagatctgcagtcccagatctttcttcagacctgggcatgaatatttttaaaaagttcaagagccgcaaagaagaccgagagaggaaaggctccattccattccaccacacaggcaagaggaggccacggagaatgggagtgcccttcctgcttcacgaggaccacctggatgtgtcccccacgcgcagcacattctcctttggaagtttctctgggctgggagaagacaggcgaggaattgagaaaggaggctggcaaaccaccattttagggaaattgacccggcgaggcagttcagatgcagccactgagatggagagtctgagcgccaggcattcccactcccatcacaccctggtaagcgacctgccggacccctccaacagccatggagaaaacaccgtcaaggaagtgcgatctcagatctccaccatcacagttgcgaccttcaataccactttggcgtcattcaacgtaggctatgcagactttttcaatgagcatatgaggaaactctgcaaccaggtgcctatcccggagatgccacatgaacctctggcatgtgctaacctacctcgaagcctcacagactcctgcataaactacagctacctagaggacacagaacatattgacgggaccaataactttgtccacaagaatggaatgcttgatctttctgtagttctgaaggctgtttatcttgtccttaatcatgacatcagctctcgtatctgtgacgtggcgctaaacattgtggaatgcttgcttcaacttggtgtggtgccctgtgtagaaaagaatagaaagaagagtgaaaacaaggaaaatgagaccttggaaaagaggccaagtgagggagctttccaattcaaaggagtatctggaagttccacctgtggattcggaggccctgctgttagtggagctggagatggtggaggagaagaaggaggaggtggagatggaggaggtggaggaggtgatggaggaggaggtggaggaggtggaggcggcccttatgagaagaatgataagaaccaagagaaggatgaaagtacacctgtaagcaaccataggcttgctctaacaatgctcatcaaaatagtgaagtctttgggatgtgcctatggttgtggtgaaggacaccgagggctctctggagatcgtctgagacaccaggtattccgagagaatgcccagaactgcctcactaagctatacaagctagataagatgcagttccgacaaaccatgagggactatgtgaacaaggactctctcaataatgtagtggacttcttgcatgctttgctaggattttgtatggagccggtcactgacaacaaggctgggtttggaaataacttcaccacagtggacaacaaatccacagcccaaaatgtggaaggcattatcgtcagcgccatgtttaaatccctcatcacacgctgcgcttcaaccacacatgaattgcacagccctgagaatctgggactgtattgtgacattcgtcagctggtccagtttatcaaagaggctcatgggaatgtcttcaggagagtggccctcagcgctctgcttgacagtgccgagaagttagcaccagggaaaaaggtggaggagaatgaacaggaatctaagcctgcaggcagtaaaaggtcagaggcgggaagcattgtggataaaggccaggtatcctctgcacctgaggaatgtcgcagcttcatgtctggtcgcccctcacagactccagagcacgatgaacaaatgcaaggagccaacttggggcggaaagatttctggcgtaagatgttcaagtcccagagtgcagcaagtgacaccagcagccagtctgaacaggacacttcagaatgcacgactgcccactcagggaccacctctgaccgacgtgcccgctcacgatcccgcagaatttccctccgaaagaagcttaaactccccataggtaaaaggaactggctgaagagatcatccctctcaggcctggcagatggtgtggaggacctcctggacattagctctgtggaccgactctctttcatcaggcaaagctccaaggtcaaattcactagtgctgtgaagctttctgaaggtgggccaggaagtggcatggaaaatggaagagatgaagaggagaatttcttcaagcgtcttggttgccacagttttgatgatcatctctctcccaaccaagatggtggaaaaagcaaaaacgtggtgaatcttggagcaatccgacaaggcatgaaacgcttccaatttctgttaaactgctgtgagccagggacaattcctgatgcctccatcctagcagctgccttggatctagaagcccctgtggtggccagagcagccttgttcctggaatgtgctcgttttgttcaccgctgcaaccgtggcaactggccagagtggatgaaagggcaccacgtgaacatcaccaagaaaggactttcccggggacgctctcccattgtgggcaacaagcgaaaccagaagctgcagtggaatgcagccaagctcttctaccaatggggagacgcaattggcgtccgattgaatgagctgtgccacggggaaagtgagagcccagccaacctgctgggtctcatttacgatgaagagaccaagaggagacttagaaaggaggatgaggaggaagactttttagatgacagtactgtgaacccctctaaatgcggttgcccctttgccttgaagatggcagcatgtcagcttcttctggagattaccaccttcctgcgagagaccttttcttgcctgcccagacctcgcactgagcctctggtgATTTACTTACAGCCTCGAAGATGGAGTTCCACGATCAACAGGAATTGACTCCCTCTACAGCTGAGCCTTCAGACCAGAAGGAAAAGGAGTCAGAGAAGCAAAGTAAGCCTGGTGAAGACCTTAAACATGCTGCCTTAGTTTCTCAGCCAGAGACAACTAAAACTTACCCTGATAAAAAGGACATGCAAGGCACGGAAGAAGAAAAAGCACCCCTAGCTTTGTTTGGGCACACTCTTGTTGCCAGCCTGGAAGACATGAAACAGAAGACAGAACCAAGCCTTGTAGTACCTGGCATTGACCTCCCTAAAGAGCCTCCAACTCCAAAAGAACAAAAGGACTGGTTCATCGAAATGCCAACGGAAGCAAAAAAGGATGAGTGGGGTTTAGTTGCCCCCATATCTCCTGGCCCTCTGACTCCCATGAGGGAAAAAGATGTATTTGATGATATCCCAAAATGGGAAGGGAAACAGTTTGATTCTCCCATGCCAAGTCCCTTTCAAGGGGGAAGCTTCACTCTTCCTTTAGATGTCATGAAGAATGAAATAGTTACAGAAACATCGCCCTTTGCCCCTGCCTTTTTACAGCCAGATGACAAAAAATCTCTGCAACAAACCAGTGGCCCAGCTACTGCCAAAGATAGTTTTAAAATTGAAGAGCCCCATGAGGCTAAACCTGACAAAATGGCAGAAGCACCACCCTCAGAGGCAATGACCTTACCCAAAGATGCTCACATTCCAGTTGTAGAAGAACATGTTATGGGGAAAGTTTTAGAGGAAGAAAAGGAGGCCATAAATCAAGAGACTGTGCAGCAAAGGGATACTTTCACCCCCAGTGGACAGGAACCTATACTTACTGAAAAGGAAACTGAGCTGAAGCTTGAAGAAAAAACCACCATTTCTGACAAAGAAGCTGTGCCAAAAGAGAGTAAACCCCCAAAACCTGCAGATGAAGAAATAGGCATAATTCAGACCTCCACAGAGCACACTTTCTCAGAACAGAAAGACCAAGAGCCTACCACAGATATGTTGAAACAGGACTCGTTCCCTGTAAGTTTGGAGCAAGCAGTTACAGATTCAGCCATGACCTCTAAAACACTGGAGAAAGCCATGACCGAACCATCTGCATTAATTGAAAAGAGCTCAATTCAGGAACTTTTTGAAATGAGAGTTGATGACAAAGATAAGATTGAAGGAGTTGGAGCTGCAACATCAGCTGAGCTTGATATGCCATTTTATGAAGATAAATCAGGAATGTCCAAGTACTTTGAAACATCTGCCTTGAAAGAAGAAGCAACAAAAAGCATTGAGCCAGGCAGTGATTACTATGAACTGAGTGACACTAGAGAAAGTGTCCATGAGTCTATTGATACCATGTCTCCCATGCATAAAAATGGTGACAAGGAGTTTCAAACAGGAAAAGAATCCCAGCCCAGTCCTCCAGCACAAGAAGCAGGGTACAGCACTCTCGCACAGAGTTATCCATCAGATTTACCTGAAGAACCCAGTTCTCCTCAAGAAAGAATGTTCACTATTGATCCAAAAGTGTATGGAGAGAAAAGGGACCTCCACAGTAAGAATAAGGATGATTTGACCCTTAGCAGGAGTTTAGGACTTGGTGGTAGGTCTGCAATAGAACAAAGAAGCATGTCAATCAATTTGCCGATGTCTTGCCTAGATTCCATAGCCCTTGGATTTAACTTTGGTCGGGGACATGATCTTTCTCCTCTGGCTTCCGATATTCTAACCAACACTAGTGGAAGTATGGATGAAGGGGATGATTACCTTCCAGCCACCACACCTGCACTGGAGAAAGCCCCTTGCTTCCCTGTAGAAAGCAAAGAGGAAGAACAGATAGAGAAAGTAAAAGCTACTGGAGAAGAAAGTACTCAAGCGGAGATATCATGTGAGTCTCCTTTCCTAGCCAAAGATTTTTACAAAAATGGTACTGTCATGGCACCTGACCTTCCTGAAATGCTAGATCTGGCAGGCACAAGGTCAAGATTGGCTTCTGTGAGTGCAGATGCTGAGGTTGCCAGGAGGAAATCAGTCCCATCAGAGACTGTGGTTGAGGATAGTCGTACTGGCTTGCCCCCGGTAACTGATGAAAACCATGTCATTGTAAAAACGGACAGTCAGCTCGAAGACCTGGGCTACTGTGTGTTCAATAAGTACACAGTCCCATTGCCATCACCTGTTCAAGACAGTGAGAATTTATCAGGGGAGAGTGGTACCTTTTACGAAGGCACTGATGATAAAGTTCGAAGAGATTTGGCCACAGACCTTTCACTGATTGAAGTGAAACTGGCAGCAGCCGGAAGAGTCAAAGATGAGTTCAGTGTTGACAAAGAAGCATCCGCGCATATCTCTGGTGACAAATCAGGACTGAGTAAGGAGTTTGACCAAGAGAAGAAAGCTAATGATAGGTTGGATACTGTACTAGAAAAGAGTGAAGAACATGCTGATTCAAAAGAACATGCCAAGAAAACTGAAGAGGCTGGTGATGAAATAGAAACATTCGGATTAGGAGTAACCTATGAGCAAGCTTTGGCCAAAGATTTGTCAATACCAACAGATGCATCCTCTGAGAAAGCAGAGAAGGGTCTTAGTTCAGTGCCAGAGATAGCTGAGGTAGAACCATCCAAAAAGGTGGAACAAGGTCTGGATTTTGCTGTCCAGGGTCAACTAGATGTTAAAATTAGTGACTTTGGACAGATGGCTTCAGGGCTAAACATAGATGATAGAAGGGCAACAGAGCTAAAACTTGAGGCTACACAGGACATGACCCCCTCATCCAAAGCACCGCAGGAGGCAGATGCATTTATGGGTGTTGAGTCTGGCCACATGAAAGAAGGCACTAAAGTTAGTGAGACAGAAGTCAAAGAGAAGGTGGCCAAGCCTGACTTGGTGCACCAGGAGGCTGTAGACAAGGAGGAGTCCTATGAATCTAGTGGTGAGCATGAAAGTCTCACCATGGAGTCCTTGAAAGCTGATGAGGGCAAGAAGGAAACATCTCCAGAATCATCTCTAATTCAAGATGAGATTGCCGTCAAATTGTCAGTGGAAATACCTTGCCCACCTGCTGTTTCAGAGGCTGATTTAGCCACAGATGAGAGAGCTGATGTCCAGATGGAATTTATTCAGGGGCCAAAAGAAGAAAGCAAAGAGACCCCAGATATATCCATCACGCCTTCTGATGTTGCAGAGCCATTGCATGAAACGATCGTATCTGAACCAGCAGAGATTCAGAGTGAGGAAGAAGAGATAGAAGCCCAGGGAGAATATGATAAACTGCTCTTCCGCTCAGACACCCTTCAGATAACTGACCTGGGTGTCTCAGGTGCCAGGGAGGAATTTGTGGAGACCTGCCCAAGTGAACACAAAGGAGTGATTGAGTCTGTTGTGACCATCGAGGATGATTTCATCACTGTAGTGCAAACCACAACTGATGAAGGGGAGTCAGGGTCCCACAGCGTGCGTTTTGCAGCCCTAGAGCAGCCTGAGGTGGAAAGGAGACCATCTCCTCATGATGAAGAAGAGTTTGAAGTAGAAGAGGCAGCTGAAGCCCAGGCAGAACCCAAAGATGGTTCCCCAGAGGCTCCAGCTTCCCCTGAGAGAGAAGAGGTTGCACTTTCTGAATATAAGACAGAAACCTATGACGATTACAAAGATGAGACCACCATTGACGACTCCATCATGGACGCTGACAGCCTCTGGGTGGACACTCAAGATGATGATAGGAGCATCATGACAGAACAGTTAGAAACTATTCCTAAAGAGGAGAAAGCTGAAAAGGAAGCTCGGAGATCATCTCTTGAGAAACATAGAAAAGAAAAGCCTTTTAAAACCGGGAGAGGCAGAATTTCCACTCCTGAAAGAAAAGTAGCTAAAAAGGAACCTAGCACAGTCTCCAGAGATGAAGTGAGAAGGAAAAAAGCAGTTTATAAGAAGGCTGAACTTGCTAAAAAAACAGAAGTTCAGGCCCACTCTCCCTCCAGGAAATTCATTTTAAAACCTGCTATCAAATATACTAGACCAACTCATCTCTCCTGTGTTAAGCGGAAAACCACAGCAGCAGGTGGGGAATCAGCTCTGGCTCCCAGTGTATTTAAACAGGCAAAGGACAAAGTCTCTGACGGAGTAACCAAGAGCCCAGAAAAGCGCTCTTCTCTCCCAAGACCTTCCTCCATTCTCCCTCCTCGGCGAGGTGTGTCAGGAGACAGAGATGAGAATTCCTTCTCTCTCAACAGTTCTATCTCTTCTTCAGCACGGCGGACCACCAGGTCAGAGCCAATTCGCAGAGCAGGGAAGAGTGGTACCTCAACACCCACTACCCCTGGGTCTACTGCCATCACTCCTGGCACCCCACCAAGTTATTCTTCACGCACACCAGGCACTCCTGGAACCCCTAGCTATCCCAGGACCCCTCACACACCAGGAACCCCCAAGTCTGCCATCTTGGTGCCGAGTGAGAAGAAGGTCGCCATCATACGTACTCCTCCAAAATCTCCTGCGACTCCCAAGCAGCTTCGGCTTATTAACCAACCACTGCCAGACCTGAAGAATGTCAAATCCAAAATCGGATCAACAGACAACATCAAATACCAGCCTAAAGGGGGGCAGGTTAGGATTTTAAACAAGAAGATCGATTTTAGCAAAGTTCAGTCCAGATGTGGTTCCAAGGATAACATCAAACATTCGGCTGGGGGCGGAAATGTACAAATTGTTACCAAGAAAATAGACCTAAGCCATGTGACATCCAAATGTGGCTCTCTGAAGAACATCCGCCACAGGCCAGGTGGCGGACGTGTGAAAATTGAGAGTGTAAAACTAGATTTCAAAGAAAAGGCCCAAGCTAAAGTTGGTTCTCTTGATAATGCTCATCATGTACCTGGAGGTGGTAATGTCAAGATTGACAGCCAAAAGTTGAACTTCAGAGAGCATGCTAAAGCCCGTGTGGACCATGGGGCTGAGATCATTACACAGTCCCCAGGCAGATCCAGCGTGGCATCACCCCGACGACTCAGCAATGTCTCCTCGTCTGGAAGCATCAACCTGCTCGAATCTCCTCAGCTTGCCACTTTGGCTGAGGATGTCACTGCTGCACTCGCTAAGCAGGGCTTGTGA MVKRKSSEGQEQDGGRGIPLPIQTFLWRQTSAFLRPKLGKQYEASCVSFERVLVENKLHGLSPALSEAIQSISRWELVQAALPHVLHCTATLLSNRNKLGHQDKLGVAETKLLHTLHWMLLEAPQDCNNERFGGTDRGSSWGGSSSAFIHQVENQGSPGQPCQSSSNDEEENNRRKIFQNSMATVELFVFLFAPLVHRIKESDLTFRLASGLVIWQPMWEHRQPGVSGFTALVKPIRNIITAKRSSPINSQSRTCESPNQDARHLEGLQVVCETFQSDSISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRASLVIPPCQRSRYATYFDVAVLRCLLQPHWSEEGTQWSLMYYLQRLRHMLEEKPEKPPEPDIPLLPRPRSSSMVAAAPSLVNTHKTQDLTMKCNEEEKSLSSEAFSKVSLTNLRRSAVPDLSSDLGMNIFKKFKSRKEDRERKGSIPFHHTGKRRPRRMGVPFLLHEDHLDVSPTRSTFSFGSFSGLGEDRRGIEKGGWQTTILGKLTRRGSSDAATEMESLSARHSHSHHTLVSDLPDPSNSHGENTVKEVRSQISTITVATFNTTLASFNVGYADFFNEHMRKLCNQVPIPEMPHEPLACANLPRSLTDSCINYSYLEDTEHIDGTNNFVHKNGMLDLSVVLKAVYLVLNHDISSRICDVALNIVECLLQLGVVPCVEKNRKKSENKENETLEKRPSEGAFQFKGVSGSSTCGFGGPAVSGAGDGGGEEGGGGDGGGGGGDGGGGGGGGGGPYEKNDKNQEKDESTPVSNHRLALTMLIKIVKSLGCAYGCGEGHRGLSGDRLRHQVFRENAQNCLTKLYKLDKMQFRQTMRDYVNKDSLNNVVDFLHALLGFCMEPVTDNKAGFGNNFTTVDNKSTAQNVEGIIVSAMFKSLITRCASTTHELHSPENLGLYCDIRQLVQFIKEAHGNVFRRVALSALLDSAEKLAPGKKVEENEQESKPAGSKRSEAGSIVDKGQVSSAPEECRSFMSGRPSQTPEHDEQMQGANLGRKDFWRKMFKSQSAASDTSSQSEQDTSECTTAHSGTTSDRRARSRSRRISLRKKLKLPIGKRNWLKRSSLSGLADGVEDLLDISSVDRLSFIRQSSKVKFTSAVKLSEGGPGSGMENGRDEEENFFKRLGCHSFDDHLSPNQDGGKSKNVVNLGAIRQGMKRFQFLLNCCEPGTIPDASILAAALDLEAPVVARAALFLECARFVHRCNRGNWPEWMKGHHVNITKKGLSRGRSPIVGNKRNQKLQWNAAKLFYQWGDAIGVRLNELCHGESESPANLLGLIYDEETKRRLRKEDEEEDFLDDSTVNPSKCGCPFALKMAACQLLLEITTFLRETFSCLPRPRTEPLVIYLQPRRWSSTINRN*LPLQLSLQTRRKRSQRSKVSLVKTLNMLP*FLSQRQLKLTLIKRTCKARKKKKHP*LCLGTLLLPAWKT*NRRQNQAL*YLALTSLKSLQLQKNKRTGSSKCQRKQKRMSGV*LPPYLLAL*LP*GKKMYLMISQNGKGNSLILPCQVPFKGEASLFL*MS*RMK*LQKHRPLPLPFYSQMTKNLCNKPVAQLLPKIVLKLKSPMRLNLTKWQKHHPQRQ*PYPKMLTFQL*KNMLWGKF*RKKRRP*IKRLCSKGILSPPVDRNLYLLKRKLS*SLKKKPPFLTKKLCQKRVNPQNLQMKK*A*FRPPQSTLSQNRKTKSLPQIC*NRTRSL*VWSKQLQIQP*PLKHWRKP*PNHLH*LKRAQFRNFLK*ELMTKIRLKELELQHQLSLICHFMKINQECPSTLKHLP*KKKQQKALSQAVITMN*VTLEKVSMSLLIPCLPCIKMVTRSFKQEKNPSPVLQHKKQGTALSHRVIHQIYLKNPVLLKKECSLLIQKCMERKGTSTVRIRMI*PLAGV*DLVVGLQ*NKEACQSICRCLA*IP*PLDLTLVGDMIFLLWLPIF*PTLVEVWMKGMITFQPPHLHWRKPLASL*KAKRKNR*RK*KLLEKKVLKRRYHVSLLS*PKIFTKMVLSWHLTFLKC*IWQAQGQDWLL*VQMLRLPGGNQSHQRLWLRIVVLACPR*LMKTMSL*KRTVSSKTWATVCSISTQSHCHHLFKTVRIYQGRVVPFTKALMIKFEEIWPQTFH*LK*NWQQPEESKMSSVLTKKHPRISLVTNQD*VRSLTKRRKLMIGWILY*KRVKNMLIQKNMPRKLKRLVMK*KHSD*E*PMSKLWPKICQYQQMHPLRKQRRVLVQCQR*LR*NHPKRWNKVWILLSRVN*MLKLVTLDRWLQG*T*MIEGQQS*NLRLHRT*PPHPKHRRRQMHLWVLSLAT*KKALKLVRQKSKRRWPSLTWCTRRL*TRRSPMNLVVSMKVSPWSP*KLMRARRKHLQNHL*FKMRLPSNCQWKYLAHLLFQRLI*PQMRELMSRWNLFRGQKKKAKRPQIYPSRLLMLQSHCMKRSYLNQQRFRVRKKR*KPRENMINCSSAQTPFR*LTWVSQVPGRNLWRPAQVNTKE*LSLL*PSRMISSL*CKPQLMKGSQGPTACVLQP*SSLRWKGDHLLMMKKSLK*KRQLKPRQNPKMVPQRLQLPLREKRLHFLNIRQKPMTITKMRPPLTTPSWTLTASGWTLKMMIGAS*QNS*KLFLKRRKLKRKLGDHLLRNIEKKSLLKPGEAEFPLLKEK*LKRNLAQSPEMK*EGKKQFIRRLNLLKKQKFRPTLPPGNSF*NLLSNILDQLISPVLSGKPQQQVGNQLWLPVYLNRQRTKSLTE*PRAQKSALLSQDLPPFSLLGEVCQETEMRIPSLSTVLSLLQHGGPPGQSQFAEQGRVVPQHPLPLGLLPSLLAPHQVILHAHQALLEPLAIPGPLTHQEPPSLPSWCRVRRRSPSYVLLQNLLRLPSSFGLLTNHCQT*RMSNPKSDQQTTSNTSLKGGRLGF*TRRSILAKFSPDVVPRITSNIRLGAEMYKLLPRK*T*AM*HPNVAL*RTSATGQVADV*KLRV*N*ISKKRPKLKLVLLIMLIMYLEVVMSRLTAKS*TSESMLKPVWTMGLRSLHSPQADPAWHHPDDSAMSPRLEASTCSNLLSLPLWLRMSLLHSLSRAC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32188 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859373:- chr3:15708743-15901278:- chr3:15900880:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17508601:- chr3:17198654-18486309:- chr3:17550093:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.30Mb] 11 9 11 2.83 INCL_NON_REF_SPLICE YES_LDAS 0.157 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32190 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17508605:- chr3:17198654-18486309:- chr3:17550097:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.30Mb] 10 9 10 2.57 ONLY_REF_SPLICE YES_LDAS 0.1427 GT 1.9086 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32192 ANKRD28::TBC1D5 ENSG00000206560.12::ENSG00000131374.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3386 TRUE 1282 ANKRD28 ENSG00000206560.12 protein_coding - - chr3:15667236-15859771:- chr3:15859377:- chr3:15708743-15901278:- chr3:15900884:- TBC1D5 ENSG00000131374.15 protein_coding - - chr3:17157162-18444817:- chr3:17623913:- chr3:17198654-18486309:- chr3:17665405:- chr3:15796386,chr3:15796391,chr3:15796394 chr3:17721998,chr3:17722000,chr3:17722000 NA NA chr3:15837893,chr3:15837898,chr3:15837901 chr3:17763490,chr3:17763492,chr3:17763492 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:1.30Mb] 8 11 8 4.07 ONLY_REF_SPLICE YES_LDAS 0.137 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32193 CARS1::ATL1 ENSG00000110619.18::ENSG00000198513.14 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1843 FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3017106:- chr11:3022152-3078843:- chr11:3038336:- ATL1 ENSG00000198513.14 protein_coding + + chr14:50532509-50634017:+ chr14:50613259:+ chr14:50999227-51100735:+ chr14:51079977:+ chr11:3017057 chr14:50610974 NA NA chr11:3038287 chr14:51077692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame tRNA-synt_1e|127-535|2.3e-121^tRNA-synt_1|138-162|1.3^tRNA-synt_1g|144-179|0.00079^ROK|188-274|0.00017^DNA_pol_A_exoN|198-224|0.012^PcfK|237-304|0.0071^tRNA-synt_1c|307-347|0.00085^tRNA-synt_1|448-519|1.4e-06^tRNA-synt_1g|478-528|2.6e-07^DNA_pol_A_exoN|672-702|0.028^tRNA-synt_1|714-751|1.3^ATP-synt_E|728-767|0.0057^tRNA-synt_1c|733-771|0.15^PcfK|741-770|0.083 none ["CARS1:Oncogene"] 8 11 8 11 ONLY_REF_SPLICE YES_LDAS 0.2157 GT 1.9656 AG 1.7232 ENST00000380525.9 1-1917 ENST00000682037.1 631-1860 chr11|-|[2]3017106-3017295[2]|[1]3017857-3017954[0]|[2]3018408-3018511[1]|[0]3018620-3018749[0]|[2]3019139-3019267[0]|[2]3020220-3020332[1]|[0]3026676-3026797[2]|[1]3028996-3029084[0]|[2]3029303-3029443[0]|[2]3038050-3038199[0]|[2]3039194-3039292[0]|[2]3039835-3039931[2]|[1]3040896-3040984[0]|[2]3042165-3042256[1]|[0]3047753-3048001[1]|[0]3057343-3057367[0]<==>chr14|+|[0]50613259-50613351[2]|[0]50614373-50614511[0]|[1]50620599-50620726[2]|[0]50621843-50621899[2]|[0]50623177-50623248[2]|[0]50628031-50628462[2]|[0]50629951-50630009[1]|[2]50632229-50632478[2] atggcagattcctccgggcagcaggctcctgactacaggtccattctgagcattagtgacgaggcagccagggcacaagccctgaacgagcacctcagcacgcgtagctatgtccaggggtactcactgtcccaggcagacgtggacgcgttcaggcagctctcggccccgcccgctgacccccagctcttccacgtggctcggtggttcaggcacatagaagcgctcctgggtagcccctgtggcaaaggccagccctgcaggctccaagcaagcaaaggccggcgtgtgcagccccagtggtcccctcctgctgggacccagccatgcagactccacctttacaacagcctcaccaggaacaaggaagtgttcatacctcaagatgggaaaaaggtgacgtggtattgctgtgggccaaccgtctatgacgcatctcacatggggcacgccaggtcctacatctcttttgatatcttgagaagagtgttgaaggattacttcaaatttgatgtcttttattgcatgaacattacggatattgatgacaagatcatcaagagggcccggcagaaccacctgttcgagcagtatcgggagaagaggcctgaagcggcacagctcttggaggatgttcaggccgccctgaagccattttcagtaaaattaaatgagaccacggatcccgataaaaagcagatgctcgaacggattcagcacgcagtgcagcttgccacagagccacttgagaaagctgtgcagtccagactcacgggagaggaagtcaacagctgtgtggaggtgttgctggaagaagccaaggatttgctctctgactggctggattctacacttggctgtgatgtcactgacaattccatcttctccaagctgcccaagttctgggagggggacttccacagagacatggaagctctgaatgttctccctccagatgtcttaacccgggttagtgagtatgtgccagaaattgtgaactttgtccagaagattgtggacaacggttacggctatgtctccaatgggtctgtctactttgatacagcgaagtttgcttctagcgagaagcactcctatgggaagctggtgcctgaggccgttggagatcagaaagcccttcaagaaggggaaggtgacctgagcatctctgcagaccgcctgagtgagaagcgctctcccaacgactttgccttatggaaggcctctaagcccggagaaccgtcctggccgtgcccttggggaaagggtcgtccgggctggcatatcgagtgctcggccatggcaggcaccctcctaggggcttcgatggacattcacggaggtgggttcgacctccggttcccccaccatgacaatgagctggcacagtcggaggcctactttgaaaacgactgctgggtcaggtacttcctgcacacaggccacctgaccattgcaggctgcaaaatgtcaaagtcactaaaaaacttcatcaccattaaagatgccttgaaaaagcactcagcacggcagttgcggctggccttcctcatgcactcgtggaaggacaccctggactactccagcaacaccatggagtcagcgcttcaatatgagaagttcttgaatgagtttttcttaaatgtgaaagatatccttcgcgctcctgttgacatcactggtcagtttgagaagtggggagaagaagaagcagaactgaataagaacttttatgacaagaagacagcaattcacaaagccctctgtgacaatgttgacacccgcaccgtcatggaagagatgcgggccttggtcagtcagtgcaacctctatatggcagcccggaaagccgtgaggaagaggcccaaccaggctctgctggagaacatcgccctgtacctcacccatatgctgaagAGTCTGATATTTCTTGTTCGAGACTGGAGTTTCCCATACGAATTTTCATATGGAGCCGATGGTGGTGCCAAATTCTTGGAAAAACGCCTCAAGGTCTCAGGGAACCAGCATGAAGAACTACAGAACGTCAGAAAACACATCCATTCCTGTTTCACCAACATTTCCTGTTTTCTGCTACCTCATCCTGGCTTAAAAGTAGCTACCAATCCAAACTTTGATGGAAAATTGAAAGAAATAGATGATGAATTCATCAAAAACTTGAAAATACTGATTCCTTGGCTACTTAGTCCCGAGAGCCTAGATATTAAAGAGATCAATGGGAATAAAATCACCTGCCGGGGTCTGGTGGAGTACTTCAAGGCTTATATAAAGATCTATCAAGGTGAAGAATTACCACATCCCAAATCCATGTTACAGGCCACAGCAGAAGCTAACAATTTAGCAGCCGTGGCAACTGCCAAGGACACATACAACAAAAAAATGGAAGAGATTTGTGGTGGTGACAAACCATTTCTGGCCCCAAATGACTTGCAGACCAAACACCTGCAACTTAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGGGAAGAATTTAGCCGGCGTTACCTGCAGCAGTTGGAGAGTGAAATAGATGAACTTTACATCCAATATATCAAGCACAATGATAGCAAAAATATCTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGTAGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTATGCAATATGATAATGGGACTGACCCTTATCACCCTGTGCACTTGGGCATATATCCGGTACTCTGGAGAATACCGAGAGCTGGGAGCTGTAATAGACCAGGTGGCTGCAGCTCTGTGGGACCAGGATATATACTTTTCTTTTTTCTTTTTAATCTGCCTTTGCCACAGGGAAGTACAAATGAGGCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTTCCCTACACCAAAGTCGGAATCTACTGAACAATCAGAAAAGAAAAAAATGTAATGCAAATTTTAAGAAATACAGGTGCATGACCAATTGTCAATTAAATATTCAGTTTTATGTCTCCATGCAAACATTCAAAGTGCTTCCATCAGAACGGAGTAAAATACTAAACACCTCTGAAGACTGCAAACTGGATTAG MADSSGQQAPDYRSILSISDEAARAQALNEHLSTRSYVQGYSLSQADVDAFRQLSAPPADPQLFHVARWFRHIEALLGSPCGKGQPCRLQASKGRRVQPQWSPPAGTQPCRLHLYNSLTRNKEVFIPQDGKKVTWYCCGPTVYDASHMGHARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYREKRPEAAQLLEDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVLLEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALNVLPPDVLTRVSEYVPEIVNFVQKIVDNGYGYVSNGSVYFDTAKFASSEKHSYGKLVPEAVGDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGEPSWPCPWGKGRPGWHIECSAMAGTLLGASMDIHGGGFDLRFPHHDNELAQSEAYFENDCWVRYFLHTGHLTIAGCKMSKSLKNFITIKDALKKHSARQLRLAFLMHSWKDTLDYSSNTMESALQYEKFLNEFFLNVKDILRAPVDITGQFEKWGEEEAELNKNFYDKKTAIHKALCDNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQDIYFSFFFLICLCHREVQMRLCTSFTVQQQPTDICIIKLSLHQSRNLLNNQKRKKCNANFKKYRCMTNCQLNIQFYVSMQTFKVLPSERSKILNTSEDCKLD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32194 TRIT1::TSNAX ENSG00000043514.17::ENSG00000116918.15 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1850 FALSE NA FALSE NA TRIT1 ENSG00000043514.17 protein_coding - - chr1:39838110-39883511:- chr1:39883318:- chr1:40303782-40349183:- chr1:40348990:- TSNAX ENSG00000116918.15 protein_coding + + chr1:231528541-231566524:+ chr1:231561128:+ chr1:231664287-231702270:+ chr1:231696874:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_16|22-50|6.7e-06^AAA_23|24-51|0.00031^AAA_33|25-65|4.3e-07^AAA_25|25-44|6.7e-05^AAA_22|25-74|1.8e-05^ABC_tran|25-120|1.1e-05^nSTAND3|25-43|0.00011^AAA_14|25-61|0.00013^IPT|26-59|2.2e-06^AAA_28|26-52|3.3e-06^CbiA-PARTIAL|26-174~|8.2e-06^AAA_18|26-50|3.1e-05^Hpr_kinase_C|26-74|0.00014^RNA_helicase|26-51|0.00031^AAA_5|26-49|0.00026^AAA|27-58|0.00054^Cytidylate_kin|28-81|0.00015^DUF87|28-45|0.00082^IPPT-PARTIAL|70-174~|1.8e-37^Mst1_SARAH|82-96|0.044^AAA_25|132-168|0.062^AAA-PARTIAL|141-174~|0.62^AAA_18-PARTIAL|158-174~|2.2^DUF87-PARTIAL|158-174~|0.23^IPT-PARTIAL|159-174~|0.068^AAA_22-PARTIAL|166-174~|1.3^Mst1_SARAH-PARTIAL|171-174~|0.049 none ["DepMap2023"];INTRACHROMOSOMAL[chr1:191.65Mb] 6 9 6 9 ONLY_REF_SPLICE YES_LDAS 0.1703 GT 1.9656 AG 1.8892 ENST00000441669.6 1-174 ENST00000366639.9 368-873 chr1|-|[2]39883318-39883491[0]<==>chr1|+|[1]231561128-231561255[2]|[0]231564528-231564905[2] atggcgtccgtggcggctgcacgagcagttcccgtgggcagtgggctcaggggcctgcaacggaccctacctcttgtagtgattctcggggccacgggcaccggcaaatccacgctggcgttgcagctaggccagcggctcggcggtgagatcgtcagcgctgactccatgcagGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTATGGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTCCCTCCTCTGATGCACAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTACCTTCTGGGAGTGGCTGACTTAACTGGAGAATTGATGCGGATGTGTATTAACAGTGTGGGGAATGGGGACATTGATACCCCCTTTGAAGTGAGCCAGTTTTTACGTCAGGTTTATGATGGGTTTTCATTCATTGGCAACACTGGACCTTACGAGGTTTCTAAGAAGCTGTATACCTTGAAACAAAGTTTGGCCAAAGTGGAGAATGCTTGTTATGCCTTGAAAGTCAGAGGGTCAGAAATTCCAAAACATATGTTGGCAGATGTGTTTTCAGTTAAAACAGAAATGATAGATCAAGAAGAGGGCATTTCTTAG MASVAAARAVPVGSGLRGLQRTLPLVVILGATGTGKSTLALQLGQRLGGEIVSADSMQDYRNMWKLSLFNTSSKHDH*LVWMKLINN*YLRLKTMGKKIKLPPLMHRISSLVLGD*ESHLSITFWEWLT*LEN*CGCVLTVWGMGTLIPPLK*ASFYVRFMMGFHSLATLDLTRFLRSCIP*NKVWPKWRMLVMP*KSEGQKFQNICWQMCFQLKQK**IKKRAFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32197 ARHGAP12::ZNF277 ENSG00000165322.18::ENSG00000198839.10 NCIH1694 SRR8615983 SRR8652045 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1846 FALSE NA FALSE NA ARHGAP12 ENSG00000165322.18 protein_coding - - chr10:31805398-31928876:- chr10:31908172:- chr10:32094326-32217804:- chr10:32197100:- ZNF277 ENSG00000198839.10 protein_coding + + chr7:112206695-112343934:+ chr7:112286873:+ chr7:111846750-111983989:+ chr7:111926928:+ chr10:31900812,chr10:31900814 chr7:112243678,chr7:112243676 NA NA chr10:32189740,chr10:32189742 chr7:111883733,chr7:111883731 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SH3_1|20-65|1e-08^SH3_9|23-70|4.1e-05^WW|51-63|1.5^SH3-WW_linker|71-266|5.8e-81^WW|270-296|6.8e-10^Glyco_hyd_101C|272-300|0.014^WW|316-341|0.00032^DUF2255|317-358|0.44^Glyco_hyd_101C|321-348|0.00011^PH|327-383|3.7^SH3-WW_linker|391-391|5.1^Glyco_hyd_101C|399-432|2.3^DUF2255|420-485|9.7e-05^PH_9|422-518|3.3e-08^PH|426-522|6.4e-15^SH3_1|492-520|0.43^PH|551-577|2.3^RhoGAP-PARTIAL|618-684~|9.1e-51 zf-C2H2_2-PARTIAL|~92-117|5.7e-07^zf-C2H2_9|142-153|6.2^Kazal_1|170-194|0.0031^zf-C2H2_12|174-199|0.011^zf-BED|174-197|0.015^HNH_5|174-182|0.4^zf-C2H2_2|175-264|4.6e-23^zf-C2H2_4|175-197|0.0042^zf-C2H2|175-182|6^zf-C2H2_jaz|175-182|2.8^DUF4187|175-179|1.7^zf-C2H2_12|211-246|0.0012^zf-BED|220-246|0.00039^zf-C2H2_4|225-245|5.2e-07^zf-C2H2|225-248|1.9e-07^zf-C2H2_jaz|226-249|8e-07^zf-C2H2_9|226-248|0.039^HNH_5|226-244|0.00036^DUF4187|226-242|0.018^zf-DBF|228-258|0.0047^zf-met|229-244|0.00065^Zap1_zf1|229-245|0.007^zf-BED|300-325|0.0087^zf-C2H2_12|301-316|0.096^zf-C2H2_9|303-323|0.12^zf-C2H2_2|304-403|6.3e-21^zf-C2H2_4|304-325|0.0024^zf-C2H2|304-325|0.16^zf-C2H2_jaz|304-316|0.26^Kazal_1|304-314|0.41^HNH_5|304-313|0.78^DUF4187|304-318|0.61^ANM3_C2H2_Zf|333-357|2.5e-07^DUF4187|345-375|0.011^zf-C2H2_12|354-379|1.7^zf-BED|356-381|1.1^HNH_5|356-375|0.14^zf-C2H2_4|357-377|0.00022^Zap1_zf1|357-376|0.021^zf-C2H2|358-377|0.00041^zf-C2H2_9|358-381|0.0057^zf-met|359-376|0.00013^zf-DBF|361-394|0.0027^zf-C2H2_jaz|362-381|0.0015^Kazal_1|400-412|0.19 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr7] 3 6 3 6 ONLY_REF_SPLICE YES_LDAS 0.1022 GT 1.7968 AG 1.8062 ENST00000311380.8 1-684 ENST00000361822.8 92-1353 chr10|-|[2]31908172-31908855[0]<==>chr7|+|[1]112286873-112287074[1]|[2]112295869-112295957[0]|[1]112296229-112296311[2]|[0]112318182-112318273[1]|[2]112327717-112327827[1]|[2]112330084-112330216[2]|[0]112336104-112336171[1]|[2]112337730-112337826[2]|[0]112339843-112339885[0]|[1]112340872-112341046[1]|[2]112342561-112342729[2] atgaaaatggctgacagaagtgggaagattattccaggacaagtgtatattgaggtggaatatgattatgaatatgaagcaaaggacagaaagattgtgataaaacaaggggagaggtacatcttggtgaaaaagaccaatgatgactggtggcaagtcaagccagatgaaaactccaaagcgttttatgtgccagcccagtatgtgaaggaggtcacgcgcaaagctctcatgccacctgttaagcaggtagctggtctgccaaataactccacgaaaataatgcagagtttgcatcttcagagatcaacagaaaatgtgaacaaattgcctgagctttcaagtttcggaaagccatcgtcatctgttcaaggaacaggtcttattcgtgatgccaatcagaattttggacccagttataatcaaggtcagactgtcaacctaagcctggacctgacccataataacggaaagtttaacaatgactcacattctcctaaagtttccagccagaataggacacgctcatttggtcattttcccggtccagagttcttggatgtagagaaaactagcttctcccaggaacaatcttgtgattccgcaggagaaggctctgaaagaatacatcaagattctgaatctggtgatgaacttagcagcagctccactgaacagataaggACAGTAAGGATTGTATCCTGGAGCCGCTTTCCCTGCCAGAAAGTCCAGGTGGCACCACCACTTTAGAAGGTTCTCCATCTGTGCCTTGTATTTTCTGTGAAGAACATTTTCCTGTGGCTGAACAAGACAAACTTCTGAAGCACATGATTATTGAGCATAAGATTGTCATAGCTGATGTCAAGTTGGTTGCTGATTTCCAAAGGTACATTTTATATTGGAGGAAAAGGTTCACTGAACAGCCCATCACAGATTTTTGTAGTGTAATAAGAATTAATTCCACTGCTCCATTTGAAGAACAAGAGAATTATTTTTTGTTATGTGACGTTTTACCAGAAGATAGAATTCTTAGAGAAGAGCTTCAGAAACAGAGACTGAGAGAAATTCTGGAACAACAGCAGCAAGAACGAAATGATACCAATTTTCATGGCGTTTGTATGTTTTGCAATGAAGAATTCCTTGGAAACAGATCTGTTATTTTGAACCACATGGCCAGAGAACATGCTTTCAACATTGGATTGCCAGACAACATTGTAAACTGCAATGAATTTTTGTGTACATTACAGAAAAAGCTTGACAATTTGCAGTGCTTGTACTGTGAGAAGACCTTCAGGGACAAAAATACACTTAAAGATCACATGAGGAAAAAACAGCATCGTAAGATTAATCCTAAGAACAGAGAATATGACAGATTTTATGTCATCAATTATTTGGAACTTGGAAAATCGTGGGAAGAAGTTCAGTTGGAAGATGATCGGGAGTTGCTGGACCATCAGGAAGATGACTGGTCTGATTGGGAAGAACACCCTGCCTCTGCAGTCTGCTTATTTTGTGAAAAGCAAGCAGAAACAATTGAGAAGTTGTATGTCCACATGGAGGATGCACACGAATTTGATCTTCTCAAAATAAAGTCAGAACTTGGATTAAATTTCTATCAGCAAGTGAAACTGGTCAATTTTATTCGGAGGCAAGTTCACCAATGCAGATGTTATGGCTGCCATGTGAAGTTCAAATCCAAAGCAGACTTAAGAACTCACATGGAAGAAACTAAACACACTTCGCTGCTCCCCGATAGAAAGACGTGGGATCAACTGGAGTATTATTTTCCAACCTATGAAAATGACACTCTCCTGTGTACACTATCTGACAGTGAAAGTGACCTGACAGCTCAGGAACAAAATGAAAATGTTCCCATCATCAGTGAAGATACATCTAAACTGTATGCTTTGAAACAAAGCAGTATTTTGAACCAGTTGCTACTATAA MKMADRSGKIIPGQVYIEVEYDYEYEAKDRKIVIKQGERYILVKKTNDDWWQVKPDENSKAFYVPAQYVKEVTRKALMPPVKQVAGLPNNSTKIMQSLHLQRSTENVNKLPELSSFGKPSSSVQGTGLIRDANQNFGPSYNQGQTVNLSLDLTHNNGKFNNDSHSPKVSSQNRTRSFGHFPGPEFLDVEKTSFSQEQSCDSAGEGSERIHQDSESGDELSSSSTEQIRTVRIVSWSRFPCQKVQVAPPL*KVLHLCLVFSVKNIFLWLNKTNF*ST*LLSIRLS*LMSSWLLISKGTFYIGGKGSLNSPSQIFVV**ELIPLLHLKNKRIIFCYVTFYQKIEFLEKSFRNRD*EKFWNNSSKNEMIPIFMAFVCFAMKNSLETDLLF*TTWPENMLSTLDCQTTL*TAMNFCVHYRKSLTICSACTVRRPSGTKIHLKIT*GKNSIVRLILRTENMTDFMSSIIWNLENRGKKFSWKMIGSCWTIRKMTGLIGKNTLPLQSAYFVKSKQKQLRSCMSTWRMHTNLIFSK*SQNLD*ISISK*NWSILFGGKFTNADVMAAM*SSNPKQT*ELTWKKLNTLRCSPIERRGINWSIIFQPMKMTLSCVHYLTVKVT*QLRNKMKMFPSSVKIHLNCML*NKAVF*TSCYY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32198 KRIT1::COG5 ENSG00000001631.17::ENSG00000164597.15 NCIH1703 SRR8615984 SRR8652044 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1851 FALSE NA FALSE NA KRIT1 ENSG00000001631.17 protein_coding - - chr7:92197498-92246166:- chr7:92234449:- chr7:91826812-91875480:- chr7:91863763:- COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107298346:- chr7:106841817-107204706:- chr7:106938791:- chr7:92232646,chr7:92232705,chr7:92232649 chr7:107320788,chr7:107321057,chr7:107320788 NA NA chr7:91861960,chr7:91862019,chr7:91861963 chr7:106961233,chr7:106961502,chr7:106961233 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NUDIX_5|22-198|6.5e-99^Ank_2|289-349|2.7e-11^Ank|291-318|0.0017^Ank_3|291-309|7.6^Ank_4|297-341|8.1e-07^Ank_5|310-353|4e-07^Ank|321-352|1.9e-07^Ank_3|321-349|0.00069^Ank_4|322-375|6e-12^Ank_5|340-395|4.1e-12^Ank_2|346-413|1.8e-10^Ank|357-386|2.1e-07^Ank_3|357-378|3.6e-05^Ank|389-411|0.49^FERM_M|392-406|6.3^SNX17-27-31_F1_FERM|421-469|0.00011^FERM_M|518-640|5.9e-23 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:14.96Mb] 35 21 35 20.02 ONLY_REF_SPLICE YES_LDAS 0.5137 GT 1.9219 AG 1.7232 ENST00000394505.7 1-989 ENST00000297135.9 1109-2490 chr7|-|[1]92234449-92234592[2]|[1]92234808-92234923[0]|[2]92235403-92235646[2]|[1]92236413-92236542[1]|[0]92237667-92237759[1]|[0]92240993-92241152[0]|[2]92242034-92242135[0]<==>chr7|-|[2]107203516-107203630[2]|[1]107210526-107210605[0]|[2]107211099-107211225[2]|[1]107230615-107230691[0]|[2]107236450-107236687[2]|[1]107248396-107248499[0]|[2]107256732-107256794[0]|[2]107258273-107258383[0]|[2]107281300-107281399[2]|[1]107283571-107283732[2]|[1]107298142-107298346[1] atgggaaatccagaaaacatagaagatgcatatgttgctgttattcgtccaaagaatactgccagtctcaattctcgggaatacagagctaagtcatatgaaattttgttgcatgaagttcccattgaaggacagaaaaaaaagagaaagaaagttttattggaaacgaaacttcaaggcaacagtgaaataacacaaggcatattggattacgtagtagaaaccaccaaaccaatttctcctgcaaaccagggtatcagaggaaaacgagttgtactaatgaaaaaatttcctctggatggagagaagatgggcagagaagcatcattatttattgttccatcagttgtcaaagataatactaaatacacatataccccaggatgcccaattttttactgcttacaagatattatgcgagtctgtagtgaatccagtactcattttgctacacttacagcaaggatgttaatagccttggataagtggttagatgaacgtcatgcacaatctcactttattccagctttattccgaccttctcctcttgagcggataaaaactaatgtcataaatcctgcatatgctactgaatcaggtcagacagaaaactcactacatatgggctatagtgcactagaaataaagagtaaaatgttagccctagagaaagcagatacctgtatttacaaccctttgtttggatcagatcttcagtatacaaatcgggtagataaagtggtaataaatccatactttggtctaggagctccagactactcaaaaatccaaatacctaaacaggaaaaatggcagagaagcatgagcagtgtcacagaagacaaggaacgacagtgggtagatgattttcctctccaccgaagcgcctgtgaaggagattcagaattactaagccgtcttctcagtgaaagattttcagtcaaccagttagatagtgaccactgggcacccattcattatgcatgctgCTTCGATGTTTTTGAAGCAGGCATTTGAAGGAGAATACCCTAAATTATTACGTCTTTATAATGACTTATGGAAGCGTCTTCAACAATACAGTCAGCATATCCAAGGGAATTTTAATGCAAGTGGAACTACAGACCTCTATGTTGACCTACAACACATGGAAGATGATGCACAAGATATATTCATACCAAAAAAGCCAGATTATGATCCAGAAAAGGCTTTGAAAGACTCACTACAACCCTATGAGGCTGCTTATCTATCAAAATCCTTATCTCGACTCTTCGATCCTATCAACTTGGTTTTTCCCCCGGGTGGTCGTAATCCTCCTTCCTCTGATGAACTTGATGGTATTATTAAAACTATAGCAAGTGAACTAAATGTTGCTGCTGTTGATACAAACCTCACATTAGCTGTGTCAAAAAATGTGGCAAAGACCATCCAGTTATACAGTGTAAAATCAGAGCAGCTTCTCTCCACACAAGGAGATGCAAGTCAGGTGATTGGGCCTCTTACTGAAGGACAGAGAAGAAATGTGGCAGTAGTGAATTCATTGTATAAGTTGCACCAATCAGTAACAAAGGTTGTTTCCAGTCAGAGCTCATTCCCACTGGCAGCTGAGCAAACTATAATTTCAGCTCTAAAGGCTATTCATGCTCTTATGGAAAATGCTGTGCAACCCTTACTCACTTCTGTGGGAGATGCTATAGAGGCCATAATCATCACCATGCATCAAGAAGACTTTTCTGGGTCATTATCCAGCTCAGGAAAACCTGATGTTCCTTGTTCTCTGTACATGAAGGAGCTACAAGGTTTCATTGCCAGAGTTATGAGTGACTATTTTAAACACTTTGAATGCTTGGATTTTGTCTTTGACAACACTGAGGCTATTGCCCAAAGAGCTGTTGAACTTTTTATCCGCCATGCCAGTCTCATAAGACCTCTTGGTGAAGGTGGGAAAATGCGACTTGCTGCTGATTTTGCACAGATGGAGTTGGCTGTGGGTCCATTCTGTAGACGAGTATCTGATTTAGGAAAGTCCTATCGGATGCTGAGATCATTCAGACCTCTGCTCTTCCAGGCAAGTGAACATGTAGCCAGTAGTCCTGCATTGGGGGATGTGATTCCGTTCAGCATCATTATTCAGTTTTTGTTCACGAGAGCACCCGCTGAACTGAAATCTCCTTTCCAGAGGGCAGAGTGGTCCCACACACGCTTCTCTCAGTGGCTGGATGACCATCCATCTGAAAAGGACAGGCTCCTCCTCATCAGGGGAGCCCTGGAAGCTTATGTTCAATCAGTGAGAAGTAGAGAAGGCAAAGAATTTGCACCAGTTTATCCCATAATGGTTCAGCTGCTTCAAAAGGCTATGTCTGCTCTTCAGTAA MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQGNSEITQGILDYVVETTKPISPANQGIRGKRVVLMKKFPLDGEKMGREASLFIVPSVVKDNTKYTYTPGCPIFYCLQDIMRVCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRPSPLERIKTNVINPAYATESGQTENSLHMGYSALEIKSKMLALEKADTCIYNPLFGSDLQYTNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVTEDKERQWVDDFPLHRSACEGDSELLSRLLSERFSVNQLDSDHWAPIHYACCFDVFEAGI*RRIP*IITSL**LMEASSTIQSAYPREF*CKWNYRPLC*PTTHGR*CTRYIHTKKARL*SRKGFERLTTTL*GCLSIKILISTLRSYQLGFSPGWS*SSFL**T*WYY*NYSK*TKCCCC*YKPHISCVKKCGKDHPVIQCKIRAASLHTRRCKSGDWASY*RTEKKCGSSEFIV*VAPISNKGCFQSELIPTGS*ANYNFSSKGYSCSYGKCCATLTHFCGRCYRGHNHHHASRRLFWVIIQLRKT*CSLFSVHEGATRFHCQSYE*LF*TL*MLGFCL*QH*GYCPKSC*TFYPPCQSHKTSW*RWENATCC*FCTDGVGCGSIL*TSI*FRKVLSDAEIIQTSALPGK*TCSQ*SCIGGCDSVQHHYSVFVHESTR*TEISFPEGRVVPHTLLSVAG*PSI*KGQAPPHQGSPGSLCSISEK*RRQRICTSLSHNGSAASKGYVCSSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32200 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1854 TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98045347:- chr8:99037079-99058697:- chr8:99057575:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2802-PARTIAL|6-21~|2.4e-05^Ribosomal_L7Ae-PARTIAL|13-21~|1.2e-31 DUF4573|94-267|5.2e-72^DUF4573|297-338|0.011 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];LOCAL_INVERSION:-:+:[17842] 302 12 302 5.93 ONLY_REF_SPLICE YES_LDAS 3.1043 GT 1.5656 AG 1.8892 ENST00000521726.1 1-21 ENST00000318528.8 59-1125 chr8|-|[2]98045347-98045367[0]<==>chr8|+|[1]98089076-98090029[0]|[1]98093221-98093333[2] atggtggccgcaaagaagacgTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAGGCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCTCTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATAGCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAAATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAAAGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACTCCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCATATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAG MVAAKKT*LQMSIFQLQKKVSPALPNQSHMHWEENLLLMAMYKGKAVLPYKSSRFQQSLQLMVLNPSKNSPWPRT*PLEGMPQTNQGPQKRLSLERDWRNLGRLNQVAKRMPQQQKERRKMQEQGQRPSL*KEMLKLSL*DQKPRVSLCRQQ*RRTLSEQWRSLRIHKLLQR*SL*EQLRTF*LCK*LESYNLRAQWERMSRPRF*KQFPKRMNLQKYWKEVSLWKQLKSSNFRQHWEKRSSPSF*KEFPKRM*HQKYWTEVSLWKSLL*MIHSIKLLKVQETWSRFNLKE*LEAWSIQHEM*RQEHMWK*SGTSILMKRTNALKVRQGKRWKQTWRMRK*VKGLKPKKKKQEKWWTFQQPH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32201 MATN2::ERICH5 ENSG00000132561.14::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1852 FALSE NA FALSE NA MATN2 ENSG00000132561.14 protein_coding + + chr8:97868840-98036724:+ chr8:97979008:+ chr8:98881068-99048952:+ chr8:98991236:+ ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:97988698,chr8:97988692 chr8:98075126,chr8:98075117 NA NA chr8:99000926,chr8:99000920 chr8:99087354,chr8:99087345 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VWA|57-229|6.8e-56^VWA_2|58-171|6.9e-17^Copine|163-210|8.4e-05^FXa_inhibition|242-277|1e-12^EGF_CA|242-277|1.5e-09^EGF_3|242-271|1.3e-06^EGF|247-268|1.5e-06^hEGF|252-268|8.2e-07^Plasmod_Pvs28|253-272|0.0001^cEGF|259-277|6.3e-09^FXa_inhibition|283-318|4.5e-12^EGF_CA|283-318|2.3e-09^EGF_3|283-318|7.4e-06^EGF|287-310|1.2e-05^Plasmod_Pvs28|293-318|0.0019^hEGF|294-309|0.0011^cEGF|300-322|2.3e-11^EGF_CA|321-359|6.8e-10^FXa_inhibition|324-359|2.9e-12^EGF|324-351|3.3e-06^EGF_3|324-352|5e-06^hEGF|334-350|2.6e-05^Plasmod_Pvs28|334-360|0.00067^cEGF|341-360|4.8e-10^EGF_CA|362-400|1.6e-08^FXa_inhibition|365-400|4.1e-12^EGF|365-392|9.1e-07^EGF_3|365-394|2.6e-06^hEGF|375-391|0.00039^Plasmod_Pvs28|375-400|0.0036^cEGF|382-404|9.5e-11^EGF_CA|403-441|1.5e-06^FXa_inhibition|406-441|1.4e-11^EGF|406-433|1.7e-06^EGF_3|406-441|6.1e-05^hEGF|416-432|0.00048^Plasmod_Pvs28|418-441|7.4e-05^cEGF|423-445|1.1e-10^hEGF|437-443|5.1^EGF_CA|444-482|1.1e-08^FXa_inhibition|447-482|1.3e-11^EGF|447-473|0.00027^EGF_3|447-474|1.2e-06^Plasmod_Pvs28|457-477|0.0016^hEGF|458-473|4.3e-05^cEGF|464-486|8.6e-07^EGF_CA|485-523|1e-06^FXa_inhibition|488-523|1.5e-09^EGF_3|488-523|0.00025^EGF|492-513|0.00017^hEGF|498-513|0.0027^Plasmod_Pvs28|500-523|0.0026^cEGF|505-523|2e-08^EGF_CA|527-564|4.1e-06^FXa_inhibition|529-564|6.7e-11^EGF|529-555|1.3e-05^EGF_3|529-564|0.00027^hEGF|539-555|0.001^Plasmod_Pvs28|544-564|0.00035^cEGF|546-566|5.8e-10^FXa_inhibition|570-605|3.5e-12^EGF_CA|570-605|2e-07^EGF_3|570-605|0.00011^Plasmod_Pvs28|570-603|0.0098^EGF|575-597|1.2e-06^hEGF|580-596|2.6e-05^cEGF|587-606|1.7e-10^FXa_inhibition|611-646|7.3e-12^EGF_CA|611-646|5.4e-06^EGF|611-637|3.7e-06^EGF_3|611-646|0.00015^hEGF|621-637|2.4e-05^Plasmod_Pvs28|621-642|7e-05^cEGF|628-647|2.7e-08^VWA|655-828|1.4e-57^VWA_2|656-769|3.7e-15^Matrilin_ccoil|909-953|1e-22^Plasmod_Pvs28|911-919|1.5^EGF|914-919|5.6 DUF4573|94-267|5.2e-72^DUF4573|297-338|0.011 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.03Mb];NEIGHBORS[27595] 243 175 243 175 ONLY_REF_SPLICE YES_LDAS 4.2139 GT 1.5546 AG 1.8892 ENST00000520016.5 1-1081 ENST00000318528.8 59-1125 chr8|+|[0]97888101-97888242[0]|[1]97930953-97931522[0]|[1]97941777-97941899[0]|[1]97961408-97961530[0]|[1]97978886-97979008[0]<==>chr8|+|[1]98089076-98090029[0]|[1]98093221-98093333[2] atggaaaagatgctcgcaggctgctttctgctgatcctcggacagatcgtcctcctccctgccgaggccagggagcggtcacgtgggaggtccatctctaggggcagacacgctcggacccacccgcagacggcccttctggagagttcctgtgagaacaagcgggcagacctggttttcatcattgacagctctcgcagtgtcaacacccatgactatgcaaaggtcaaggagttcatcgtggacatcttgcaattcttggacattggtcctgatgtcacccgagtgggcctgctccaatatggcagcactgtcaagaatgagttctccctcaagaccttcaagaggaagtccgaggtggagcgtgctgtcaagaggatgcggcatctgtccacgggcaccatgactgggctggccatccagtatgccctgaacatcgcattctcagaagcagagggggcccggcccctgagggagaatgtgccacgggtcataatgatcgtgacagatgggagacctcaggactccgtggccgaggtggctgctaaggcacgggacacgggcatcctaatctttgccattggtgtgggccaggtagacttcaacaccttgaagtccattgggagtgagccccatgaggaccatgtcttccttgtggccaatttcagccagattgagacgctgacctccgtgttccagaagaagttgtgcacggcccatatgtgcagcaccctggagcataactgtgcccacttctgcatcaacatccctggctcatacgtctgcaggtgcaaacaaggctacattctcaactcggatcagacgacttgcagaatccaggatctgtgtgccatggaggaccacaactgtgagcagctctgtgtgaatgtgccgggctccttcgtctgccagtgctacagtggctacgccctggctgaggatgggaagaggtgtgtggctgtggactactgtgcctcagaaaaccacggatgtgaacatgagtgtgtaaatgctgatggctcctacctttgccagtgccatgaaggatttgctcttaacccagataaaaaaacgtgcacaaTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAGGCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCTCTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATAGCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAAATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAAAGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACTCCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCATATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAG MEKMLAGCFLLILGQIVLLPAEARERSRGRSISRGRHARTHPQTALLESSCENKRADLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDHVFLVANFSQIETLTSVFQKKLCTAHMCSTLEHNCAHFCINIPGSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTITSNEHFSTAEESESCFAQPKPHALGRESTVDGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQPGEGLEESGPPQPGGKEDAPAAEGKKKDAGAGTEAESLKGNAEAQPLGPEAKGQPLQAAVEKDSLRAVEVTENPQTAAEMKPLGTTENVLTLQIAGELQPQGTVGKDEQAPLLETISKENESPEILEGSQFVETAEEQQLQATLGKEEQPQLLERIPKENVTPEVLDRSQLVEKPVMNDPFHKTPEGPGNMEQIQPEGIVGSMEHPARNVEAGAYVEMIRNIHTNEEDQRIEGETGEKVETDMENEKVSEGAETKEEETGEVVDLSAAT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32202 RPL30::ERICH5 ENSG00000156482.11::ENSG00000177459.11 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1853 TRUE 3419 TRUE 1299 RPL30 ENSG00000156482.11 protein_coding - - chr8:98024851-98046469:- chr8:98044943:- chr8:99037079-99058697:- chr8:99057171:- ERICH5 ENSG00000177459.11 protein_coding + + chr8:98064522-98093610:+ chr8:98089076:+ chr8:99076750-99105838:+ chr8:99101304:+ chr8:98044457,chr8:98044459 chr8:98086835,chr8:98086833 NA NA chr8:99056685,chr8:99056687 chr8:99099063,chr8:99099061 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2802|6-61|2.4e-05^Ribosomal_L7Ae|13-105|1.2e-31^Hydrolase_6|22-88|6.9e-06 DUF4573|94-267|5.2e-72^DUF4573|297-338|0.011 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];LOCAL_INVERSION:-:+:[17842] 176 145 176 139.07 ONLY_REF_SPLICE YES_LDAS 3.1763 GT 1.9329 AG 1.8892 ENST00000521726.1 1-167 ENST00000318528.8 59-1125 chr8|-|[1]98044943-98045088[0]|[2]98045347-98045367[0]<==>chr8|+|[1]98089076-98090029[0]|[1]98093221-98093333[2] atggtggccgcaaagaagacgaaaaagtcgctggagtcgatcaactctaggctccaactcgttatgaaaagtgggaagtacgtcctggggtacaagcagactctgaagatgatcagacaaggcaaagcgaaattggtcattctcgctaacaactgcccagctttgagTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACTGTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTCCAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGACTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAGGCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCTCTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATAGCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAAATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAAAGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACTCCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCATATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAGAATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAG MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALSNFK*AFFNCRRK*VLLCPTKATCTGKRIYC*WQCTKGKPSSLTKAQGFSRAYS*WC*TPPRTAPGQGRSPWKGCHRPIRVHRKDSAWRGTGGIWAASTRWQRGCPSSRRKEERCRSRDRGRVSKRKC*SSAFRTRSQGSAFAGSSREGLSQSSGGH*ESTNCCRDEASRNN*ERSDSANSWRATTSGHSGKG*AGPASRNNFQRE*ISRNIGRKSVCGNS*RAATSGNIGKRGAAPASRKNSQRECNTRSIGQKSACGKACYE*SIP*NS*RSRKHGADST*RNSWKHGASSTKCRGRSICGNDQEHPY**RGPTH*R*DRGKGGNRHGE*ESE*RG*NQRRRNRRSGGPFSSHI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32205 NUP214::NTMT1 ENSG00000126883.19::ENSG00000148335.15 NCIH1650 SRR8615987 SRR8652146 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA NUP214 ENSG00000126883.19 protein_coding + + chr9:131125573-131234663:+ chr9:131147584:+ chr9:134000960-134110050:+ chr9:134022971:+ NTMT1 ENSG00000148335.15 protein_coding + + chr9:129608884-129636135:+ chr9:129632650:+ chr9:132371163-132398414:+ chr9:132394929:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NUP214:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:1.49Mb] 16 6 16 6 ONLY_REF_SPLICE YES_LDAS 0.2218 GT 1.7232 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nucleoporin 214kDa (CAN) 1 AML, T-ALL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32210 ZNFX1::ECI1 ENSG00000124201.15::ENSG00000167969.13 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1859 FALSE NA FALSE NA ZNFX1 ENSG00000124201.15 protein_coding - - chr20:49237946-49278426:- chr20:49278021:- chr20:47854483-47894963:- chr20:47894558:- ECI1 ENSG00000167969.13 protein_coding - - chr16:2239402-2252300:- chr16:2246986:- chr16:2289403-2302301:- chr16:2296987:- chr20:49275949,chr20:49275953,chr20:49275953 chr16:2248121,chr16:2248122,chr16:2248423 NA NA chr20:47892486,chr20:47892490,chr20:47892490 chr16:2298122,chr16:2298123,chr16:2298424 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr16] 148 9 148 9 ONLY_REF_SPLICE YES_LDAS 2.3331 GT 1.4295 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32211 KATNBL1::TP53BP1 ENSG00000134152.11::ENSG00000067369.14 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1858 FALSE NA FALSE NA KATNBL1 ENSG00000134152.11 protein_coding - - chr15:34140674-34210096:- chr15:34145398:- chr15:34432875-34502297:- chr15:34437599:- TP53BP1 ENSG00000067369.14 protein_coding - - chr15:43403061-43510728:- chr15:43422126:- chr15:43695259-43802926:- chr15:43714324:- chr15:34142398,chr15:34142402 chr15:43423150,chr15:43423151 NA NA chr15:34434599,chr15:34434603 chr15:43715348,chr15:43715349 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nucleo_P87|5-67|0.00018^Katanin_con80|149-299|2.2e-44^Nucleo_P87|154-236|0.0023 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:9.19Mb] 136 137 134.89 136.73 ONLY_REF_SPLICE YES_LDAS 4.0365 GT 1.8062 AG 1.7819 ENST00000256544.8 1-882 ENST00000263801.7 3814-5919 chr15|-|[2]34145398-34145491[2]|[1]34146761-34146850[2]|[1]34147200-34147289[2]|[1]34147380-34147430[2]|[1]34148632-34148750[0]|[2]34152790-34153069[2]|[1]34154644-34154684[0]|[2]34163560-34163676[0]<==>chr15|-|[2]43407383-43407570[1]|[0]43407943-43408088[2]|[1]43408897-43409096[0]|[2]43409647-43409741[1]|[0]43413119-43413334[1]|[0]43415594-43415809[1]|[0]43416225-43416416[1]|[0]43420305-43420735[2]|[1]43421025-43421174[2]|[1]43421855-43422126[0] atggcatcagaaacccacaatgttaaaaaacggaacttttgtaataagattgaggatcatttcattgatcttcctagaaaaaagatctctaatttcactaataagaacatgaaggaggttaagaaatctccaaaacagttggctgcttacataaatagaacagttggacaaactgtgaaaagcccagataaacttcgtaaagtgatctatcgcagaaagaaagttcatcatccctttccaaatccttgttacagaaaaaaacagtcccctggaagtgggggctgtgacatggcaaataaagaaaatgaactggcttgtgcaggccacctgcctgaaaaattacaccatgatagtcgaacatatttggttaactccagtgattctggttcttcacagacagaaagcccatcatcaaaatatagtgggtttttttctgaggtttctcaggaccatgaaacaatggcccaagttttgttcagcaggaatatgagattgaatgtagctttaactttctggagaaagagaagtataagtgaacttgtagcttatttgttgaggatagaagatcttggcgttgtggtagattgccttcctgtgctcaccaattgtttacaggaagaaaaacaatatatctcacttggctgctgtgttgacttgttgcctctagtaaagtcactacttaaaagcaaatttgaagaatatgttatagttggtttaaactggcttcaagcagtcattaaaaggtggtggtcagaactatcatccaaaacagaaattataaatgatggaaatattcaaattttaaaacaacaattaagtggattatgggaacaggaaaaccatcttactttggttccaggatatactggtaatatagctaagGAGACTGAAGAGCCAATTGTAGAGTGTCAGGAGTGTGAAACTGAAGTTTCCCCTTCACAGACTGGGGGCTCCTCAGGTGACCTGGGGGATATCAGCTCCTTCTCCTCCAAGGCATCCAGCTTACACCGCACATCAAGTGGGACAAGTCTCTCAGCTATGCACAGCAGTGGAAGCTCAGGGAAAGGAGCCGGACCACTCAGAGGGAAAACCAGCGGGACAGAACCCGCAGATTTTGCCTTACCCAGCTCCCGAGGAGGCCCAGGAAAACTGAGTCCTAGAAAAGGGGTCAGTCAGACAGGGACGCCAGTGTGTGAGGAGGATGGTGATGCAGGCCTTGGCATCAGACAGGGAGGGAAGGCTCCAGTCACGCCTCGTGGGCGTGGGCGAAGGGGCCGCCCACCTTCTCGGACCACTGGAACCAGAGAAACAGCTGTGCCTGGCCCCTTGGGCATAGAGGACATTTCACCTAACTTGTCACCAGATGATAAATCCTTCAGCCGTGTCGTGCCCCGAGTGCCAGACTCCACCAGACGAACAGATGTGGGTGCTGGTGCTTTGCGTCGTAGTGACTCTCCAGAAATTCCTTTCCAGGCTGCTGCTGGCCCTTCTGATGGCTTAGATGCCTCCTCTCCAGGAAATAGCTTTGTAGGGCTCCGTGTTGTAGCCAAGTGGTCATCCAATGGCTACTTTTACTCTGGGAAAATCACACGAGATGTCGGAGCTGGGAAGTATAAATTGCTCTTTGATGATGGGTACGAATGTGATGTGTTGGGCAAAGACATTCTGTTATGTGACCCCATCCCGCTGGACACTGAAGTGACGGCCCTCTCGGAGGATGAGTATTTCAGTGCAGGAGTGGTGAAAGGACATAGGAAGGAGTCTGGGGAACTGTACTACAGCATTGAAAAAGAAGGCCAAAGAAAGTGGTATAAGCGAATGGCTGTCATCCTGTCCTTGGAGCAAGGAAACAGACTGAGAGAGCAGTATGGGCTTGGCCCCTATGAAGCAGTAACACCTCTTACAAAGGCAGCAGATATCAGCTTAGACAATTTGGTGGAAGGGAAGCGGAAACGGCGCAGTAACGTCAGCTCCCCAGCCACCCCTACTGCCTCCAGTAGCAGCAGCACAACCCCTACCCGAAAGATCACAGAAAGTCCTCGTGCCTCCATGGGAGTTCTCTCAGGCAAAAGAAAACTTATCACTTCTGAAGAGGAACGGTCCCCTGCCAAGCGAGGTCGCAAGTCTGCCACAGTAAAACCTGGTGCAGTAGGGGCAGGAGAGTTTGTGAGCCCCTGTGAGAGTGGAGACAACACCGGTGAACCCTCTGCCCTGGAAGAGCAGAGAGGGCCTTTGCCTCTCAACAAGACCTTGTTTCTGGGCTACGCATTTCTCCTTACCATGGCCACAACCAGTGACAAGTTGGCCAGCCGCTCCAAACTGCCAGATGGTCCTACAGGAAGCAGTGAAGAAGAGGAGGAATTTTTGGAAATTCCTCCTTTCAACAAGCAGTATACAGAATCCCAGCTTCGAGCAGGAGCTGGCTATATCCTTGAAGATTTCAATGAAGCCCAGTGTAACACAGCTTACCAGTGTCTTCTAATTGCGGATCAGCATTGTCGAACCCGGAAGTACTTCCTGTGCCTTGCCAGTGGGATTCCTTGTGTGTCTCATGTCTGGGTCCATGATAGTTGCCATGCCAACCAGCTCCAGAACTACCGTAATTATCTGTTGCCAGCTGGGTACAGCCTTGAGGAGCAAAGAATTCTGGACTGGCAACCCCGTGAAAATCCTTTCCAGAATCTGAAGGTACTCTTGGTATCAGACCAACAGCAGAACTTCCTGGAGCTCTGGTCTGAGATCCTCATGACTGGTGGTGCAGCCTCTGTGAAGCAGCACCATTCAAGTGCCCATAACAAAGATATTGCTTTAGGGGTATTTGATGTGGTGGTGACGGACCCCTCATGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTGTTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAATATAAACACGATTATGTTTCTCACTAA MASETHNVKKRNFCNKIEDHFIDLPRKKISNFTNKNMKEVKKSPKQLAAYINRTVGQTVKSPDKLRKVIYRRKKVHHPFPNPCYRKKQSPGSGGCDMANKENELACAGHLPEKLHHDSRTYLVNSSDSGSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNMRLNVALTFWRKRSISELVAYLLRIEDLGVVVDCLPVLTNCLQEEKQYISLGCCVDLLPLVKSLLKSKFEEYVIVGLNWLQAVIKRWWSELSSKTEIINDGNIQILKQQLSGLWEQENHLTLVPGYTGNIAKETEEPIVECQECETEVSPSQTGGSSGDLGDISSFSSKASSLHRTSSGTSLSAMHSSGSSGKGAGPLRGKTSGTEPADFALPSSRGGPGKLSPRKGVSQTGTPVCEEDGDAGLGIRQGGKAPVTPRGRGRRGRPPSRTTGTRETAVPGPLGIEDISPNLSPDDKSFSRVVPRVPDSTRRTDVGAGALRRSDSPEIPFQAAAGPSDGLDASSPGNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLGPYEAVTPLTKAADISLDNLVEGKRKRRSNVSSPATPTASSSSSTTPTRKITESPRASMGVLSGKRKLITSEEERSPAKRGRKSATVKPGAVGAGEFVSPCESGDNTGEPSALEEQRGPLPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEEQRILDWQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQHPKYKHDYVSH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32212 SLC31A1::CPNE2 ENSG00000136868.11::ENSG00000140848.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1860 FALSE NA FALSE NA SLC31A1 ENSG00000136868.11 protein_coding + + chr9:113221544-113264492:+ chr9:113221678:+ chr9:115983824-116026772:+ chr9:115983958:+ CPNE2 ENSG00000140848.17 protein_coding + + chr16:57092583-57148369:+ chr16:57125860:+ chr16:57126495-57182281:+ chr16:57159772:+ chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759,chr9:113225759 chr16:57125747,chr16:57125741,chr16:57125740,chr16:57125720,chr16:57125717,chr16:57125702,chr16:57125690 NA NA chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039,chr9:115988039 chr16:57159659,chr16:57159653,chr16:57159652,chr16:57159632,chr16:57159629,chr16:57159614,chr16:57159602 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTERCHROMOSOMAL[chr9--chr16] 114 31 114 31 ONLY_REF_SPLICE YES_LDAS 2.1548 GT 1.9656 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32213 LRIG2::CHIA ENSG00000198799.12::ENSG00000134216.19 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3433 TRUE 1302 LRIG2 ENSG00000198799.12 protein_coding + + chr1:113073198-113132260:+ chr1:113098785:+ chr1:113615820-113674882:+ chr1:113641407:+ CHIA ENSG00000134216.19 protein_coding + + chr1:111290851-111320566:+ chr1:111310400:+ chr1:111833473-111863188:+ chr1:111853022:+ chr1:113099747,chr1:113099748 chr1:111292450,chr1:111292448 NA NA chr1:113642369,chr1:113642370 chr1:111835072,chr1:111835070 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.75Mb] 79 51 79 48.52 ONLY_REF_SPLICE YES_LDAS 1.895 GT 1.8062 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32214 CHMP4C::C8orf88 ENSG00000164695.5::ENSG00000253250.3 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1864 FALSE NA FALSE NA CHMP4C ENSG00000164695.5 protein_coding + + chr8:81732448-81759515:+ chr8:81732816:+ chr8:82644683-82671750:+ chr8:82645051:+ C8orf88 ENSG00000253250.3 protein_coding - - chr8:90958471-90985238:- chr8:90960848:- chr8:91970699-91997466:- chr8:91973076:- chr8:81733402,chr8:81733402 chr8:90966401,chr8:90966396 NA NA chr8:82645637,chr8:82645637 chr8:91978629,chr8:91978624 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Allexi_40kDa|21-81|0.014^Snf7-PARTIAL|25-190~|1.1e-58^CEP19|47-131|8.6e-06^SYF2|53-147|1.8e-05^Allexi_40kDa-PARTIAL|115-190~|0.00064^CEP19|170-179|0.46 none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:9.20Mb] 70 53 70 53 ONLY_REF_SPLICE YES_LDAS 1.8278 GT 1.7819 AG 1.5546 ENST00000297265.5 1-190 ENST00000517562.3 224-354 chr8|+|[0]81732627-81732816[0]<==>chr8|-|[2]90959007-90959030[0]|[2]90960742-90960848[1] atgagcaagttgggcaagttctttaaagggggcggctcttctaagagccgagccgctcccagtccccaggaggccctggtccgacttcgggagactgaggagatgctgggcaagaaacaagagtacctggaaaatcgaatccagagagaaatcgccctggccaagaagcacggcacgcagaataagcgagAGAGAATTAAATACAGCAGAGATTTCCTGTTGAAGCTCTCAAGTGTTTCCATCTGCAGAAAAAAACCAGACTTTCTGCCTGATCATCCCATTGTACTGCAAAAACCAGAAAACAACCAAAGTTTTAAGTAG MSKLGKFFKGGGSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHGTQNKRERIKYSRDFLLKLSSVSICRKKPDFLPDHPIVLQKPENNQSFK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32216 RABGAP1L::DNM3 ENSG00000152061.24::ENSG00000197959.15 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1865 FALSE NA FALSE NA RABGAP1L ENSG00000152061.24 protein_coding + + chr1:174159410-174995308:+ chr1:174159657:+ chr1:174128548-174964445:+ chr1:174128795:+ DNM3 ENSG00000197959.15 protein_coding + + chr1:171817887-172418466:+ chr1:172379018:+ chr1:171787027-172387606:+ chr1:172348158:+ chr1:174168272,chr1:174168273 chr1:172351889,chr1:172351887 NA NA chr1:174137410,chr1:174137411 chr1:172321029,chr1:172321027 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RABGAP1L:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.74Mb] 56 45 56 45 ONLY_REF_SPLICE YES_LDAS 1.5009 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32219 TAB1::GRAP2 ENSG00000100324.14::ENSG00000100351.17 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1874 FALSE NA FALSE NA TAB1 ENSG00000100324.14 protein_coding + + chr22:39399778-39437060:+ chr22:39399835:+ chr22:39795783-39833065:+ chr22:39795840:+ GRAP2 ENSG00000100351.17 protein_coding + + chr22:39901084-39973721:+ chr22:39965990:+ chr22:40297088-40369725:+ chr22:40361994:+ chr22:39415059,chr22:39415038,chr22:39415060 chr22:39961422,chr22:39961232,chr22:39961420 NA NA chr22:39811064,chr22:39811043,chr22:39811065 chr22:40357426,chr22:40357236,chr22:40357424 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none SH3_1-PARTIAL|~291-322|7.1e-18^SH3_9-PARTIAL|~291-326|2.2e-15^SH3_2-PARTIAL|~291-327|2.7e-12^DUF5348-PARTIAL|~291-313|0.00074^SH3_3|294-309|0.023 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.46Mb] 27 0 27 0 ONLY_REF_SPLICE YES_LDAS 0.4012 GT 1.9656 AG 1.8892 ENST00000216160.11 1-33 ENST00000344138.9 291-993 chr22|+|[0]39399803-39399835[2]<==>chr22|+|[2]39965990-39966158[2]|[0]39968042-39968272[2]|[0]39969411-39969533[2]|[0]39970905-39971084[2] atggcggcgcagaggaggagcttgctgcagagtGCATGAGGATGACGTTCAACACTTCAAGGTCATGCGAGACAACAAGGGTAATTACTTTCTGTGGACTGAGAAGTTTCCATCCCTAAATAAGCTGGTAGACTACTACAGGACAAATTCCATCTCCAGACAGAAGCAGATCTTCCTTAGAGACAGAACCCGAGAAGACCAGGGTCACCGGGGCAACAGCCTGGACCGGAGGTCCCAGGGAGGCCCACACCTCAGTGGGGCTGTGGGAGAAGAAATCCGACCTTCGATGAACCGGAAGCTGTCGGATCACCCCCCGACCCTTCCCCTGCAGCAGCACCAGCACCAGCCACAGCCTCCGCAATATGCCCCAGCGCCCCAGCAGCTGCAGCAGCCCCCACAGCAGCGATATCTGCAGCACCACCATTTCCACCAGGAACGCCGAGGAGGCAGCCTTGACATAAATGATGGGCATTGTGGCACCGGCTTGGGCAGTGAAATGAATGCGGCCCTCATGCATCGGAGACACACAGACCCAGTGCAGCTCCAGGCGGCAGGGCGAGTGCGGTGGGCCCGGGCGCTGTATGACTTTGAGGCCCTGGAGGATGACGAGCTGGGGTTCCACAGCGGGGAGGTGGTGGAGGTCCTGGATAGCTCCAACCCATCCTGGTGGACCGGCCGCCTGCACAACAAGCTGGGCCTCTTCCCTGCCAACTACGTGGCACCCATGACCCGATAA MAAQRRSLLQSA*G*RSTLQGHARQQG*LLSVD*EVSIPK*AGRLLQDKFHLQTEADLP*RQNPRRPGSPGQQPGPEVPGRPTPQWGCGRRNPTFDEPEAVGSPPDPSPAAAPAPATASAICPSAPAAAAAPTAAISAAPPFPPGTPRRQP*HK*WALWHRLGQ*NECGPHASETHRPSAAPGGRASAVGPGAV*L*GPGG*RAGVPQRGGGGGPG*LQPILVDRPPAQQAGPLPCQLRGTHDPI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32221 LRRC28::IQCH ENSG00000168904.15::ENSG00000103599.20 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1867 FALSE NA FALSE NA LRRC28 ENSG00000168904.15 protein_coding + + chr15:99251362-99390729:+ chr15:99287951:+ chr15:99791567-99930934:+ chr15:99828156:+ IQCH ENSG00000103599.20 protein_coding + + chr15:67254786-67502260:+ chr15:67384936:+ chr15:67547124-67794598:+ chr15:67677274:+ chr15:99310521,chr15:99310517 chr15:67382669,chr15:67382665 NA NA chr15:99850726,chr15:99850722 chr15:67675007,chr15:67675003 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LRR_8|19-77|5.8e-10^LRR_9|38-99|2.5e-06^LRR_6|38-43|0.72^LRR_8|42-100|6.1e-14^LRR_4|43-77|5.6e-09^LRR_1|43-61|0.0024^LRR_6|64-77|0.2^LRR_8|66-123|3.5e-11^LRR_1|66-87|0.00023^LRR_4|69-99|8.1e-07^LRR_1|89-110|0.00047^LRR_6|89-100|0.0029^LRR_8|112-169|3.5e-12^LRR_4|113-149|2e-10^LRR_1|113-132|0.0002^LRR_6|113-123|0.032^LRR_9|134-195|0.00049^LRR_1|136-153|0.0013^LRR_6|136-145|0.23^LRR_4|158-192|3.1e-05^LRR_1|158-179|0.021^LRR_8|173-192|0.00077^LRR_6|179-192|0.077^LRR_4|180-216|3.5e-05^LRR_1|181-200|0.012^LRR_1|205-223|0.31^LRR_6|212-218|3.1^LRR_4|289-305|1.4 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:31.75Mb] 22 16 22 16 ONLY_REF_SPLICE YES_LDAS 0.5647 GT 1.8062 AG 1.9329 ENST00000301981.8 1-385 ENST00000335894.9 1373-3084 chr15|+|[0]99255958-99256125[2]|[0]99276576-99276616[1]|[2]99287257-99287294[0]|[1]99287814-99287951[0]<==>chr15|+|[1]67384936-67385019[0]|[1]67388831-67389006[2]|[0]67395291-67395563[2]|[0]67400114-67400305[2]|[0]67416931-67417051[0]|[1]67421291-67421577[2]|[0]67465127-67465297[2]|[0]67475696-67475818[2]|[0]67490003-67490064[1]|[2]67494258-67494366[2]|[0]67500633-67500746[2] atggcgtccgaactttgtaagacgatctctgtggcaaggctagaaaagcacaagaatttgttcttaaattataggaatctgcaccattttccattggagttactgaaagatgagggactgcagtacttggagagactctatatgaaaaggaactccctgacatccttgccagaaaaccttgctcagaagcttccaaaccttgtggaactatacctgcactcaaataacatagttgtggttccggaagccattgggtctcttgtaaaactccaatgtctggatcttagtgacaatgccttagaaattgtttgcccagaaattggtcgtctgagagctttacgtcatcttcgattagctaataaccaactgcaattcctacctccagGGTATTCCCAGCCTGTGAGAGAACATATTGCCGATTTCAACACACAGCAGAACATGCAGCTGGGGAGGCTGTGTGACATCTTAGATGCCAATGTGAATGTCATCTACATCTGCTCCCATCATATGAATGACGAGTTAGTGCTGTATTACAAAAAAATCCTAAGTCTACATGCAGCCGTCAAATCTGGGAACCTTGAGGACAGAAGTGACCTGCAGGACAGGTTCAAAATTATCACACCTGAAGCTGTAAACATCTTCCCTAAGCATCATATGTGCCTGGCCACTCACCTGATGTACAGTCCCAAGGCAATCAAAAGAATAAAAAATCTCATCCGAGGAACAGAGGCCTACATCGTCAGCGGGCTCCTCCACAGAGATGATTTAGCTGTGGCCGATATGTTAGACATACCCATCCTGGGCTCTGAGCCTGAACTAGCTCATCTTTATAGTACCAAATCTGGAGGCAAACGTGTCTTTGACAGTGCCAATGTGGCAGTTCCTCCTGGAATATATGATATTTATAGTCAGCAACAGATGATAGAGCAGCTGAGTCAGCTGATAACTGATCACCTGCAAATACAGCGTTGGCTCTTTAAAATGGACTCTGAGTTCCGAGGAAATGGGACTGCATTTTGTGATATTCCTTCCTACCTAAAGTGCTACAAATGGGTGCTAAAGGAGAGTAGCAGATATGGCCTTGAAGACTGGAGAAAGAAATGGGCACAAGAGCCAGCTTTGGTGAAGATCTCTGAGGAGCTGGCGGGCATTTTAGCACAGCACGCACAGCCAGTCAATGAGAAACGGTTCCCGACGTGGAGGAAATTCCTCCAAACATTTCTCAGTCAAGGGGGTGTGATCGAAGCATTCCCACCTGCAGACAATGTCACCAACCTCACAGTGGACATGCTGATAGAGCCCAACGGGAAAATCAGCGTGCTGTCGACAGGGGACCAGCTTCATGCTGAAAGCCCCTTCATCTCCTCTGGTACCACCGTGCCTCAGACCTCAGTGGATCCCCAAGTTCTCACTTATTTGTGCCTCCAAATTGGAAAAGCCTGCAGAATGAGAGATGTGGTTGGTTACTTTTCGATAGATCTGGTGACTTTTATAGATCCAAGCACCTTGGAACAACAGGTGTGGGCAACCGGCCTTAACCTCGCATATAGTGACCAGCTGGCCCTGACTCAACTCACCTTATACCTGACAAACGGCCATCTGGATTGCAGTTTGAGCACCCTGGAAGTGCCCCGCTTTGTTCCAAAGGAAAGGAAGAAAACCAAATGCATGAGTGCGCTGTCAATGCCGATGCTGGCAACCAGTCGCTATGCAGTGATGACCACCCAGCTAAGACACAGCAATCTCTCACTGGTTTTCCACTATGTTTTTCTCCAGATCTGTAGGGCCCATGGCATTGGCTATGATGTTGAGGAAAGGCAAGGAACTGTTTTTATATTATATGAGCACCTGAAGAGACACAAGTTGGGAATGTTAACAATCGGCGAGGATCTCCAGGGGGTCCTCATGACCTTTGCTCGCCATCTCTTCATCATCCATCAAGAAATATCAGCACCTAATATGCAAGGCGAGACCAATTTTAAGACCACCATTGCTGATATTGAAACTATTCTAAGAGTAACAAAGGAAAACAAAATGAGATTTGAAGAGGAGCAACAGTCCAAAGATGATAAAAACCTCTCTAAACCCAAGAAATGA MASELCKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQYLERLYMKRNSLTSLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPGYSQPVREHIADFNTQQNMQLGRLCDILDANVNVIYICSHHMNDELVLYYKKILSLHAAVKSGNLEDRSDLQDRFKIITPEAVNIFPKHHMCLATHLMYSPKAIKRIKNLIRGTEAYIVSGLLHRDDLAVADMLDIPILGSEPELAHLYSTKSGGKRVFDSANVAVPPGIYDIYSQQQMIEQLSQLITDHLQIQRWLFKMDSEFRGNGTAFCDIPSYLKCYKWVLKESSRYGLEDWRKKWAQEPALVKISEELAGILAQHAQPVNEKRFPTWRKFLQTFLSQGGVIEAFPPADNVTNLTVDMLIEPNGKISVLSTGDQLHAESPFISSGTTVPQTSVDPQVLTYLCLQIGKACRMRDVVGYFSIDLVTFIDPSTLEQQVWATGLNLAYSDQLALTQLTLYLTNGHLDCSLSTLEVPRFVPKERKKTKCMSALSMPMLATSRYAVMTTQLRHSNLSLVFHYVFLQICRAHGIGYDVEERQGTVFILYEHLKRHKLGMLTIGEDLQGVLMTFARHLFIIHQEISAPNMQGETNFKTTIADIETILRVTKENKMRFEEEQQSKDDKNLSKPKK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32224 MTMR10::TRPM1 ENSG00000166912.17::ENSG00000134160.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1870 FALSE NA FALSE NA MTMR10 ENSG00000166912.17 protein_coding - - chr15:30938941-30991628:- chr15:30947130:- chr15:31231144-31283831:- chr15:31239333:- TRPM1 ENSG00000134160.16 protein_coding - - chr15:31001065-31161160:- chr15:31003070:- chr15:31293268-31453363:- chr15:31295273:- chr15:30944438,chr15:30944438,chr15:30944443 chr15:31007604,chr15:31058884,chr15:31007606 NA NA chr15:31236641,chr15:31236641,chr15:31236646 chr15:31299807,chr15:31351087,chr15:31299809 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Myotub-related|221-321|2.6e-14^Myotub-related|332-511|1.3e-60^3-PAP|574-704|5.5e-64 none ["TRPM1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.01Mb];LOCAL_REARRANGEMENT:-:[9454] 17 8 17 8 ONLY_REF_SPLICE YES_LDAS 0.3715 GT 1.7819 AG 1.7819 ENST00000435680.6 1-1548 ENST00000558768.5 3333-4581 chr15|-|[2]30947130-30947300[0]|[2]30948302-30948471[1]|[0]30951968-30952038[2]|[1]30953562-30953631[1]|[0]30954763-30954893[2]|[1]30958863-30958951[0]|[2]30959034-30959121[2]|[1]30960881-30961073[1]|[0]30967920-30968010[0]|[2]30974314-30974456[1]|[0]30974931-30975003[0]|[2]30976819-30976955[1]|[0]30990777-30990837[0]|[2]30991447-30991506[0]<==>chr15|-|[2]31001822-31003070[2] atgttctccctcaagccgcccaaacccaccttcaggtcctacctcctgccaccgccccagactgacgataagatcaattcggaaccgaagattaaaaaactggagccagtccttttgccaggagaaattgtcgtaaatgaagtcaattttgtgagaaaatgcattgcaacagacacaagccagtacgatttgtggggaaagctgatatgcagtaacttcaaaatctcctttattacagatgacccaatgccattacagaaattccattacagaaaccttcttcttggtgaacacgatgtccctttaacatgtattgagcaaattgtcacagtaaacgaccacaagaggaagcagaaagtcctaggccccaaccagaaactgaaatttaatccaacagagttaattatttattgtaaagatttcagaattgtcagatttcgctttgatgaatcaggtcccgaaagtgctaaaaaggtatgccttgcaatagctcattattcccagccaacagacctccagctactctttgcatttgaatatgttgggaaaaaataccacaattcagcaaacaaaattaatggaattccctcaggagatggaggaggaggaggaggaggaggtaatggagctggtggtggcagcagccagaaaactccactctttgaaacttactcggattgggacagagaaatcaagaggacaggtgcttccgggtggagagtttgttctattaacgagggttacatgatatccacttgccttccagaatacattgtagtgccaagttctttagcagaccaagatctaaagatcttttcccattcttttgttgggagaaggatgccactctggtgctggagccactctaacggcagtgctcttgtgcgaatggccctcatcaaagacgtgctgcagcagaggaagattgaccagaggatttgtaatgcaataactaaaagtcacccacagagaagtgatgtttacaaatcagatttggataagaccttgcctaatattcaagaagtacaggcagcatttgtaaaactgaagcagctatgcgttaatgagccttttgaagaaactgaagagaaatggttatcttcactggaaaatactcgatggttagaatatgtaagggcattccttaagcattcagcagaacttgtatacatgctagaaagcaaacatctctctgtagtcctacaagaggaggaaggaagagacttgagctgttgtgtagcttctcttgttcaagtgatgctggatccctattttaggacaattactggatttcagagtctgatacagaaggagtgggtcatggcaggatatcagtttctagacagatgcaaccatctaaagagatcagagaaagagtctcctttatttttgctattcttggatgccacctggcagctgttagaacaatatcctgcagcttttgagttctccgaaacctacctggcagtgttgtatgacagcacccggatctcactgtttggcaccttcctgttcaactcccctcaccagcgagtgaagcaaagcacgAGTTGAAAATATGTCAATGAGGTTGGAAGAAATCAATGAAAGAGAAACTTTTATGAAAACTTCCCTGCAGACTGTTGACCTTCGACTTGCTCAGCTAGAAGAATTATCTAACAGAATGGTGAATGCTCTTGAAAATCTTGCGGGAATCGACAGGTCTGACCTGATCCAGGCACGGTCCCGGGCTTCTTCTGAATGTGAGGCAACGTATCTTCTCCGGCAAAGCAGCATCAATAGCGCTGATGGCTACAGCTTGTATCGATATCATTTTAACGGAGAAGAGTTATTATTTGAGGATACATCTCTCTCCACGTCACCAGGGACAGGAGTCAGGAAAAAAACCTGTTCCTTCCGTATAAAGGAAGAGAAGGACGTGAAAACGCACCTAGTCCCAGAATGTCAGAACAGTCTTCACCTTTCACTGGGCACAAGCACATCAGCAACCCCAGATGGCAGTCACCTTGCAGTAGATGACTTAAAGAACGCTGAAGAGTCAAAATTAGGTCCAGATATTGGGATTTCAAAGGAAGATGATGAAAGACAGACAGACTCTAAAAAAGAAGAAACTATTTCCCCAAGTTTAAATAAAACAGATGTGATACATGGACAGGACAAATCAGATGTTCAAAACACTCAGCTAACAGTGGAAACGACAAATATAGAAGGCACTATTTCCTATCCCCTGGAAGAAACCAAAATTACACGCTATTTCCCCGATGAAACGATCAATGCTTGTAAAACAATGAAGTCCAGAAGCTTCGTCTATTCCCGGGGAAGAAAGCTGGTCGGTGGGGTTAACCAGGATGTAGAGTACAGTTCAATCACGGACCAGCAATTGACGACGGAATGGCAATGCCAAGTTCAAAAGATCACGCGCTCTCATAGCACAGATATTCCTTACATTGTGTCGGAAGCTGCAGTGCAAGCTGAGCATAAAGAGCAGTTTGCAGATATGCAAGATGAACACCATGTCGCTGAAGCAATTCCTCGAATCCCTCGCTTGTCCCTAACCATTACTGACAGAAATGGGATGGAAAACTTACTGTCTGTGAAGCCAGATCAAACTTTGGGATTCCCATCTCTCAGGTCAAAAAGTTTACATGGACATCCTAGGAATGTGAAATCCATTCAGGGAAAGTTAGACAGATCTGGACATGCCAGTAGTGTAAGCAGCTTAGTAATTGTGTCTGGAATGACAGCAGAAGAAAAAAAGGTTAAGAAAGAGAAAGCTTCCACAGAAACTGAATGCTAG MFSLKPPKPTFRSYLLPPPQTDDKINSEPKIKKLEPVLLPGEIVVNEVNFVRKCIATDTSQYDLWGKLICSNFKISFITDDPMPLQKFHYRNLLLGEHDVPLTCIEQIVTVNDHKRKQKVLGPNQKLKFNPTELIIYCKDFRIVRFRFDESGPESAKKVCLAIAHYSQPTDLQLLFAFEYVGKKYHNSANKINGIPSGDGGGGGGGGNGAGGGSSQKTPLFETYSDWDREIKRTGASGWRVCSINEGYMISTCLPEYIVVPSSLADQDLKIFSHSFVGRRMPLWCWSHSNGSALVRMALIKDVLQQRKIDQRICNAITKSHPQRSDVYKSDLDKTLPNIQEVQAAFVKLKQLCVNEPFEETEEKWLSSLENTRWLEYVRAFLKHSAELVYMLESKHLSVVLQEEEGRDLSCCVASLVQVMLDPYFRTITGFQSLIQKEWVMAGYQFLDRCNHLKRSEKESPLFLLFLDATWQLLEQYPAAFEFSETYLAVLYDSTRISLFGTFLFNSPHQRVKQSTS*KYVNEVGRNQ*KRNFYENFPADC*PSTCSARRII*QNGECS*KSCGNRQV*PDPGTVPGFF*M*GNVSSPAKQHQ*R*WLQLVSISF*RRRVII*GYISLHVTRDRSQEKNLFLPYKGREGRENAPSPRMSEQSSPFTGHKHISNPRWQSPCSR*LKER*RVKIRSRYWDFKGR**KTDRL*KRRNYFPKFK*NRCDTWTGQIRCSKHSANSGNDKYRRHYFLSPGRNQNYTLFPR*NDQCL*NNEVQKLRLFPGKKAGRWG*PGCRVQFNHGPAIDDGMAMPSSKDHALS*HRYSLHCVGSCSAS*A*RAVCRYAR*TPCR*SNSSNPSLVPNHY*QKWDGKLTVCEARSNFGIPISQVKKFTWTS*ECEIHSGKVRQIWTCQ*CKQLSNCVWNDSRRKKG*ERESFHRN*ML FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32225 SLC44A3-AS1::ALG14 ENSG00000224081.10::ENSG00000172339.10 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1868 FALSE NA FALSE NA SLC44A3-AS1 ENSG00000224081.10 transcribed_processed_pseudogene - - chr1:94613814-94855426:- chr1:94819956:- chr1:95079370-95320982:- chr1:95285512:- ALG14 ENSG00000172339.10 protein_coding - - chr1:94974405-95072951:- chr1:94983306:- chr1:95439961-95538507:- chr1:95448862:- chr1:94810989,chr1:94810993 chr1:95006991,chr1:95006992 NA NA chr1:95276545,chr1:95276549 chr1:95472547,chr1:95472548 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ALG14:Oncogene"];["TCGA_StarF2019","CCLE_StarF2019"] 15 17 15 14.17 ONLY_REF_SPLICE YES_LDAS 0.4335 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32227 PML::MCTP2 ENSG00000140464.20::ENSG00000140563.16 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1869 FALSE NA FALSE NA PML ENSG00000140464.20 protein_coding + + chr15:73994673-74047827:+ chr15:73998476:+ chr15:74287014-74340168:+ chr15:74290817:+ MCTP2 ENSG00000140563.16 protein_coding + + chr15:94231538-94483952:+ chr15:94356137:+ chr15:94774767-95027181:+ chr15:94899366:+ chr15:74006104,chr15:74006105 chr15:94345340,chr15:94345338 NA NA chr15:74298445,chr15:74298446 chr15:94888569,chr15:94888567 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-RING_5|56-92|3.7e-07^zf-C3HC4|57-91|4.1e-08^zf-RING_UBOX|57-88|3e-06^zf-RING_UBOX|88-93|0.21^ExoU_mid_dom|103-134|0.13^Imm71|112-132|1.5^zf-B_box|126-166|1.5e-11^zf-C3HC4|129-156|2.4^zf-RING_5|129-156|0.0088^zf-B_box|189-223|0.00039^RNaseH_like|220-287|0.00019^Sigma70_ner|221-302|6.7e-05^ExoU_mid_dom|223-270|2.8e-05^OmpH|228-298|0.00061^Cep57_CLD_2|231-282|3.3e-05^Nop16|233-313|0.00029^DUF3583|240-418|8.3e-105^Imm71|280-391|6.2e-06^OmpH|295-328|0.41 none ["PML:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:20.18Mb] 11 10 11 10 ONLY_REF_SPLICE YES_LDAS 0.3121 GT 1.8295 AG 1.8323 ENST00000395132.6 1-602 ENST00000357742.10 1006-2637 chr15|+|[0]73994813-73994941[2]|[0]73998004-73998476[1]<==>chr15|+|[0]94356137-94356301[2]|[0]94358482-94358612[1]|[2]94367605-94367791[2]|[0]94370087-94370180[0]|[1]94384022-94384124[1]|[2]94385423-94385525[2]|[0]94398961-94399062[2]|[0]94399921-94399995[2]|[0]94401900-94402019[2]|[0]94440176-94440298[2]|[0]94442919-94442960[2]|[0]94458137-94458246[1]|[2]94470333-94470442[0]|[1]94476696-94476793[2]|[0]94478966-94479034[2] atggagcctgcacccgcccgatctccgaggccccagcaggaccccgcccggccccaggagcccaccatgcctccccccgagaccccctctgaaggccgccagcccagccccagccccagccctacagagcgagcccccgcttcggaggaggagttccagtttctgcgctgccagcaatgccaggcggaagccaagtgcccgaagctgctgccttgtctgcacacgctgtgctcaggatgcctggaggcgtcgggcatgcagtgccccatctgccaggcgccctggcccctaggtgcagacacacccgccctggataacgtctttttcgagagtctgcagcggcgcctgtcggtgtaccggcagattgtggatgcgcaggctgtgtgcacccgctgcaaagagtcggccgacttctggtgctttgagtgcgagcagctcctctgcgccaagtgcttcgaggcacaccagtggttcctcaagcacgaggcccggcccctagcagagctgcgcaaccagtcggtgcgtgagttcctggacggcacccgcaagaccaacaacatcttctgctccaaccccaaccaccgcacccctacgctgaccagTCCTCTTTGATACGCAACCTACGGCTCTCTGAGTCCTTGAAAAAGAACCAACTCTGGAACGGGATTATAAGTATAACTTTGTTGGAAGGGAAGAATGTCTCAGGAGGAAGCATGACAGAGATGTTTGTCCAGTTAAAACTGGGAGATCAGAGGTATAAAAGTAAGACACTGTGTAAGAGTGCAAATCCGCAGTGGCAGGAACAGTTTGACTTTCACTACTTCTCTGACAGGATGGGCATTTTGGACATTGAAGTGTGGGGAAAGGACAACAAAAAGCATGAGGAACGTCTGGGCACGTGTAAAGTGGATATCTCGGCACTCCCTCTGAAGCAAGCCAACTGCCTGGAGCTGCCACTGGACAGCTGTCTGGGGGCTCTCCTTATGTTGGTCACACTTACACCCTGTGCGGGGGTCTCCGTCTCTGATCTGTGTGTCTGCCCCTTAGCAGACCTCAGCGAAAGAAAGCAGATTACCCAGCGATATTGCTTACAGAACTCCCTGAAAGATGTGAAAGACGTCGGCATTCTACAAGTGAAGGTTTTAAAGGCAGCAGATCTCTTAGCGGCAGATTTCTCAGGGAAGAGTGACCCATTTTGCTTGTTGGAGTTAGGCAATGACCGACTTCAGACGCATACCGTCTACAAAAACCTCAACCCTGAATGGAACAAAGTTTTTACATTTCCCATTAAAGATATCCATGATGTTTTGGAAGTGACAGTGTTTGATGAAGATGGAGATAAACCCCCAGATTTTCTTGGAAAAGTTGCCATTCCCTTGCTGTCCATTAGAGATGGACAACCGAATTGTTATGTACTAAAGAATAAAGATTTAGAACAAGCTTTTAAAGGAGTTATTTACTTAGAGATGGACCTTATATATAATCCGGTGAAAGCAAGTATTAGGACTTTTACTCCCCGGGAAAAGCGCTTTGTTGAAGACAGCCGCAAGCTGTCCAAAAAGATCTTATCAAGAGATGTGGACCGTGTGAAAAGAATCACTATGGCAATATGGAATACAATGCAGTTCCTTAAAAGCTGCTTCCAGTGGGAATCCACATTAAGAAGTACAATAGCATTCGCGGTATTTTTGATCACTGTCTGGAATTTTGAACTATATATGATCCCCTTGGCATTGTTGCTGATCTTTGTCTACAATTTCATCAGACCTGTGAAAGGCAAGGTCAGCAGCATCCAGGACAGCCAGGAGAGCACAGACATAGATGACGAGGAGGATGAAGATGACAAGGAATCTGAGAAAAAGGGGTTGATTGAAAGAATCTATATGGTACAGGATATTGTTTCAACTGTTCAAAACGTCTTGGAGGAAATAGCTTCTTTTGGAGAAAGGATTAAGAACACATTTAACTGGACGGTCCCCTTCCTTTCATCTCTGGCCTGTTTGATTCTGGCAGCAGCCACCATCATTTTGTATTTCATTCCACTGCGGTACATCATTTTAATCTGGGGCATAAATAAATTTACTAAGAAGCTTCGAAATCCCTATTCCATCGACAATAATGAGCTACTAGACTTCCTCTCTAGGGTACCGTCTGATGTTCAAAAGGTGCAGTATGCAGAATTGAAACTCTGCAGCAGCCACAGCCCCCTGCGGAAGAAGCGCAGCGCTCTCTAG MEPAPARSPRPQQDPARPQEPTMPPPETPSEGRQPSPSPSPTERAPASEEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLGADTPALDNVFFESLQRRLSVYRQIVDAQAVCTRCKESADFWCFECEQLLCAKCFEAHQWFLKHEARPLAELRNQSVREFLDGTRKTNNIFCSNPNHRTPTLTSPL*YATYGSLSP*KRTNSGTGL*V*LCWKGRMSQEEA*QRCLSS*NWEIRGIKVRHCVRVQIRSGRNSLTFTTSLTGWAFWTLKCGERTTKSMRNVWARVKWISRHSL*SKPTAWSCHWTAVWGLSLCWSHLHPVRGSPSLICVSAP*QTSAKESRLPSDIAYRTP*KM*KTSAFYK*RF*RQQIS*RQISQGRVTHFACWS*AMTDFRRIPSTKTSTLNGTKFLHFPLKISMMFWK*QCLMKMEINPQIFLEKLPFPCCPLEMDNRIVMY*RIKI*NKLLKELFT*RWTLYIIR*KQVLGLLLPGKSALLKTAASCPKRSYQEMWTV*KESLWQYGIQCSSLKAASSGNPH*EVQ*HSRYF*SLSGILNYI*SPWHCC*SLSTISSDL*KARSAASRTARRAQT*MTRRMKMTRNLRKRG*LKESIWYRILFQLFKTSWRK*LLLEKGLRTHLTGRSPSFHLWPV*FWQQPPSFCISFHCGTSF*SGA*INLLRSFEIPIPSTIMSY*TSSLGYRLMFKRCSMQN*NSAAATAPCGRSAALS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE promyelocytic leukemia 1 APL, ALL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32228 DERA::ENSG00000255910 ENSG00000023697.13::ENSG00000255910.2 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DERA ENSG00000023697.13 protein_coding + + chr12:15911302-16037381:+ chr12:15911414:+ chr12:16064236-16190315:+ chr12:16064348:+ ENSG00000255910 ENSG00000255910.2 lncRNA + + chr12:19775451-20012261:+ chr12:19923198:+ chr12:19928385-20165195:+ chr12:20076132:+ chr12:15932083,chr12:15932076 chr12:19866369,chr12:19866352 NA NA chr12:16085017,chr12:16085010 chr12:20019303,chr12:20019286 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1486 GT 1.6895 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32229 LRIG2::CHIA ENSG00000198799.12::ENSG00000134216.19 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1861 TRUE 3433 TRUE 1302 LRIG2 ENSG00000198799.12 protein_coding + + chr1:113073198-113132260:+ chr1:113098785:+ chr1:113615820-113674882:+ chr1:113641407:+ CHIA ENSG00000134216.19 protein_coding + + chr1:111290851-111320566:+ chr1:111314540:+ chr1:111833473-111863188:+ chr1:111857162:+ chr1:113099747,chr1:113099748 chr1:111292450,chr1:111292448 NA NA chr1:113642369,chr1:113642370 chr1:111835072,chr1:111835070 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame LRR_8|79-130|0.047^LRR_1|79-89|0.32^LRR_4|80-112|0.016^LRR_6|80-88|1.3^LRR_6|96-110|0.54^LRR_4|98-132|0.012^LRR_5|98-190|3.4e-06^LRR_8|99-154|9e-07^LRR_1|99-113|1.7^LRR_4|121-159|7.6e-05^LRR_8|144-192|4.1e-13^LRR_4|144-183|5.1e-08^LRR_1|146-166|0.0042^LRR_9|146-227|8.6e-05^LRR_6|146-154|0.14^LRR_4|168-190|0.00016^LRR_1|168-190|9.6e-05^LRR_6|169-180|0.0076^LRR_4|193-233|3e-05^LRR_8|194-251|5.2e-14^LRR_1|194-212|1.8^LRR_5|207-334|4.9e-12^LRR_6|214-227|0.18^LRR_1|216-229|0.44^LRR_9|221-299|0.00016^LRR_8|240-299|3e-18^LRR_4|240-275|4.4e-05^LRR_1|240-261|0.32^LRR_6|240-252|0.55^LRR_6|263-276|0.11^LRR_1|264-284|0.069^LRR_6|287-299|3.5^LRR_8|289-346|1e-15^LRR_4|289-328|2.4e-07^LRR_1|289-308|0.092^LRR_5|296-369|8.6e-09^LRR_8|312-371|4.5e-18^LRR_1|313-333|0.0015^LRR_6|313-324|0.023^LRR_9|315-398|1.3e-08^LRR_6|336-348|0.19^LRR_8|337-398|6.8e-16^LRR_4|337-371|1.6e-07^LRR_1|337-350|0.19^LRR_5|345-442|2.6e-13^LRR_6|359-372|0.0057^LRR_4|360-402|4.6e-09^LRR_1|360-375|0.0024^LRR_4|386-427|9.8e-10^LRR_6|386-398|0.018^LRR_8|387-441|3.1e-14^LRR_1|387-406|0.091^LRR_9|405-449|0.0089^LRR_4|411-443|1.1e-05^LRR_1|411-431|0.0042^LRR_6|411-422|0.034^LRR_6|433-440|3.8^LRRCT|471-493|1.5e-06^Ig_3|497-584|6.3e-17^Ig_2|497-598|5.1e-12^I-set|498-598|1.8e-10^V-set|503-598|1.4e-07^ig|509-591|1e-10^C2-set_2|512-537|2.4^Ig_5|512-546|0.029^PRIMA1|517-541|2.7^I-set|602-692|1.3e-23^Ig_3|602-679|4e-16^ig|610-684|1.9e-11^Ig_2|612-692|1.6e-11^C2-set_2|617-642|3.1e-05^Ig_5|617-680|0.025^V-set|660-693|0.00035^I-set|696-783|1.1e-18^Ig_3|696-770|5.3e-16^Ig_2|703-773|2.2e-09^ig|706-773|6.9e-10^C2-set_2|706-750|1.8e-06^Ig_5|710-788|0.00028^V-set|748-766|0.038^DUF4781|762-816|0.00015^PRIMA1|791-830|0.00033 Glyco_hydro_18-PARTIAL|~258-365|4.3e-110^Serglycin|404-451|1.2e-05^CBM_14|430-476|3e-11 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.75Mb] 9 30 9 2.48 ONLY_REF_SPLICE YES_LDAS 0.1706 GT 1.8062 AG 1.8062 ENST00000361127.6 1-1172 ENST00000343320.10 258-1431 chr1|+|[0]113073407-113073645[1]|[2]113091318-113091383[1]|[2]113093206-113093280[1]|[2]113093430-113093564[1]|[2]113094339-113094482[1]|[2]113094612-113094755[1]|[2]113095874-113096017[1]|[2]113096222-113096365[1]|[2]113098705-113098785[1]<==>chr1|+|[2]111314540-111314596[1]|[2]111315270-111315435[2]|[0]111317681-111317805[1]|[2]111317986-111318109[2]|[0]111318493-111318678[2]|[0]111319120-111319239[2]|[0]111319327-111319468[0]|[1]111320213-111320466[2] atggcgccggcgcccctaggcgtcccggaggagcagttgctggggtgtcgatctagagtgctttctcggttactcttcattgcccagaccgctctcctcctgttgcccgccgccggagcaggtctctgccccgcgccctgctcctgccgcattcctctcctggactgcagtcgcaggaaattgcccgcaccgagctggagggcgctgtcgggcttgctgccccccgacaccgctatcctggatttcagtcataatcggttgtctaactggaacatcagcttggaatcacaaacattacaggaagtgaaaatgaattacaatgaactaacagaaatcccgtattttggagaacctacatctaatattactctactttcattagtccataatataatcccagaaataaatgcacaggcactccagttttaccctgctctggagagtttagacctcagctcaaatataatatcagaaatcaagacatcttcatttcctcgcatgcagcttaaatacctgaatttaagtaataacagaataaccaccttggaggctggttgcttcgataatttatcaagttccttattagtggtaaagttaaaccgtaaccgaatgagcatgattccacctaagatcttcaagctgcctcacctccaattcttggaacttaaaagaaacagaattaaaattgtggaaggtcttacattccaagggcttgactccttaagatctttgaaaatgcagcggaatggaattagcaaacttaaggatggagcattttttggcttgaataacatggaagaactagaactggaacacaacaaccttacacgagtaaacaaggggtggttgtatggcttgcgaatgttacagcagctctatgtgagccagaatgctattgaaagaatcagccctgatgcatgggagttctgccaaagactatccgaacttgatttgtcctataaccagctgacccgcctggatgaatctgcctttgtgggtctgagcttattggagagattgaatttaggagacaacagagtcactcatattgctgatggtgtatttagatttctttccaatcttcagacattagacttaagaaacaatgaaatttcatgggccatagaagatgctagtgaagcctttgctggactcacaagtctcactaaactGAACAGCCAGCTGAAAACTCTCCTGGCCATTGGAGGCTGGAACTTCGGGACTGCCCCTTTCACTGCCATGGTTTCTACTCCTGAGAACCGCCAGACTTTCATCACCTCAGTCATCAAATTCCTGCGCCAGTATGAGTTTGACGGGCTGGACTTTGACTGGGAGTACCCTGGCTCTCGTGGGAGCCCTCCTCAGGACAAGCATCTCTTCACTGTCCTGGTGCAGGAAATGCGTGAAGCTTTTGAGCAGGAGGCCAAGCAGATCAACAAGCCCAGGCTGATGGTCACTGCTGCAGTAGCTGCTGGCATCTCCAATATCCAGTCTGGCTATGAGATCCCCCAACTGTCACAGTACCTGGACTACATCCATGTCATGACCTACGACCTCCATGGCTCCTGGGAGGGCTACACTGGAGAGAACAGCCCCCTCTACAAATACCCGACTGACACCGGCAGCAACGCCTACCTCAATGTGGATTATGTCATGAACTACTGGAAGGACAATGGAGCACCAGCTGAGAAGCTCATCGTTGGATTCCCTACCTATGGACACAACTTCATCCTGAGCAACCCCTCCAACACTGGAATTGGTGCCCCCACCTCTGGTGCTGGTCCTGCTGGGCCCTATGCCAAGGAGTCTGGGATCTGGGCTTACTACGAGATCTGTACCTTCCTGAAAAATGGAGCCACTCAGGGATGGGATGCCCCTCAGGAAGTGCCTTATGCCTATCAGGGCAATGTGTGGGTTGGCTATGACAACATCAAGAGCTTCGATATTAAGGCTCAATGGCTTAAGCACAACAAATTTGGAGGCGCCATGGTCTGGGCCATTGATCTGGATGACTTCACTGGCACTTTCTGCAACCAGGGCAAGTTTCCCCTAATCTCCACCCTGAAGAAGGCCCTCGGCCTGCAGAGTGCAAGTTGCACGGCTCCAGCTCAGCCCATTGAGCCAATAACTGCTGCTCCCAGTGGCAGCGGGAACGGGAGCGGGAGTAGCAGCTCTGGAGGCAGCTCGGGAGGCAGTGGATTCTGTGCTGTCAGAGCCAACGGCCTCTACCCCGTGGCAAATAACAGAAATGCCTTCTGGCACTGCGTGAATGGAGTCACGTACCAGCAGAACTGCCAGGCCGGGCTTGTCTTCGACACCAGCTGTGATTGCTGCAACTGGGCATAA MAPAPLGVPEEQLLGCRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPLLDCSRRKLPAPSWRALSGLLPPDTAILDFSHNRLSNWNISLESQTLQEVKMNYNELTEIPYFGEPTSNITLLSLVHNIIPEINAQALQFYPALESLDLSSNIISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIPPKIFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTRVNKGWLYGLRMLQQLYVSQNAIERISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKLNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDTSCDCCNWA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32237 PLA2G6::CHEK2 ENSG00000184381.20::ENSG00000183765.24 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PLA2G6 ENSG00000184381.20 protein_coding - - chr22:38111495-38214778:- chr22:38169218:- chr22:38507502-38610785:- chr22:38565225:- CHEK2 ENSG00000183765.24 protein_coding - - chr22:28687743-28742422:- chr22:28734727:- chr22:29083731-29138410:- chr22:29130715:- chr22:38161171 chr22:28735627 NA NA chr22:38557178 chr22:29131615 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CHEK2:ArcherDX_panel","CHEK2:FoundationOne_panel","CHEK2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:9.37Mb] 7 12 7 9.33 ONLY_REF_SPLICE YES_LDAS 0.2426 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase Chk2 CAMK RAD53 O96017 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE CHK2 checkpoint homolog (S. pombe) 1 Yes breast familial breast cancer epithelial TSG frameshift 32241 IQCK::PRKCB ENSG00000174628.17::ENSG00000166501.14 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1872 FALSE NA FALSE NA IQCK ENSG00000174628.17 protein_coding + + chr16:19716456-19858467:+ chr16:19827137:+ chr16:19727778-19869789:+ chr16:19838459:+ PRKCB ENSG00000166501.14 protein_coding + + chr16:23835983-24220611:+ chr16:24032136:+ chr16:23847304-24231932:+ chr16:24043457:+ chr16:19839195 chr16:24022976 NA NA chr16:19850517 chr16:24034297 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Dpy-30|129-147|0.00032^Dpy-30|167-179|0.0024^Glyco_hydro_39|214-257|3.8e-06^IQ|217-233|9.2e-07 Kinase-like-PARTIAL|~289-309|1.2^Haspin_kinase|302-488|3e-05^Pkinase|344-597|3.7e-65^PK_Tyr_Ser-Thr|344-583|7e-40^ABC1|417-490|6.9e-05^Kinase-like|457-546|1.3e-05^C1_2|620-633|2.3^Pkinase_C|627-661|1.9e-11 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:3.98Mb] 5 4 5 4 ONLY_REF_SPLICE YES_LDAS 0.1337 GT 1.2419 AG 1.5058 ENST00000564186.5 1-802 ENST00000643927.1 289-2022 chr16|+|[0]19718307-19718487[0]|[1]19730430-19730494[2]|[0]19733698-19733827[0]|[1]19735353-19735450[2]|[0]19763848-19763900[1]|[2]19764035-19764112[1]|[2]19788838-19788922[2]|[0]19827026-19827137[0]<==>chr16|+|[0]24032136-24032247[0]|[1]24035419-24035547[0]|[1]24092791-24092947[1]|[2]24094163-24094297[1]|[2]24112973-24113069[2]|[0]24123835-24123981[2]|[0]24154684-24154857[2]|[0]24172270-24172361[1]|[2]24174518-24174580[1]|[2]24180790-24180928[2]|[0]24185111-24185191[2]|[0]24185460-24185567[2]|[0]24191090-24191230[2]|[0]24214658-24214816[2] atggcggcaccgcggcaaatccccagccacatagtgcgcctcaagcccagctgctctacagactcgtcgttcacccggacgccggtgcccaccgtgtctctcgcgtcccgcgagctgcctgtctcgtcgtggcaggtcaccgagccgtcaagcaagaatctgtgggagcagatctgcaaggagtatgaagctgagcagcctccctttccagaaggatataaagtcaaacaggagcctgtgattacggttgcgccagtagaggaaatgctttttcatggcttcagtgcagagcactattttccggtttcccatttcaccatgatctcacgtacaccctgtcctcaagataaatcggaaacaatcaacccaaaaacatgttctcccaaagaatatttggaaactttcatctttcctgttctgcttcccggaatggctagcctgcttcaccaagcgaagaaagaaaaatgttttgagaggaaaagaaccaaattcattgcctgtgattttctgactgagtggttatacaaccaaaatccaaagagggcaggggagccattcacagaatttttctccattccatttgtggaggagcggctaaagcaacacccacggccgccaatcccactctcgctcctgctgacagaagaggaagcagccctctacattcaatccttctggagagcctgtgtggttcgctgtgatcctgagattcaagaactgcgtcagtggcagaagaaacttcgcgaggccaagcacattcaccagcaagtcaaaattttctgggccaagcaagaacaaaaagGACCCCCGCAGCAAACACAAGTTTAAGATCCACACGTACTCCAGCCCCACGTTTTGTGACCACTGTGGGTCACTGCTGTATGGACTCATCCACCAGGGGATGAAATGTGACACCTGCATGATGAATGTGCACAAGCGCTGCGTGATGAATGTTCCCAGCCTGTGTGGCACGGACCACACGGAGCGCCGCGGCCGCATCTACATCCAGGCCCACATCGACAGGGACGTCCTCATTGTCCTCGTAAGAGATGCTAAAAACCTTGTACCTATGGACCCCAATGGCCTGTCAGATCCCTACGTAAAACTGAAACTGATTCCCGATCCCAAAAGTGAGAGCAAACAGAAGACCAAAACCATCAAATGCTCCCTCAACCCTGAGTGGAATGAGACATTTAGATTTCAGCTGAAAGAATCGGACAAAGACAGAAGACTGTCAGTAGAGATTTGGGATTGGGATTTGACCAGCAGGAATGACTTCATGGGATCTTTGTCCTTTGGGATTTCTGAACTTCAGAAAGCCAGTGTTGATGGCTGGTTTAAGTTACTGAGCCAGGAGGAAGGCGAGTACTTCAATGTGCCTGTGCCACCAGAAGGAAGTGAGGCCAATGAAGAACTGCGGCAGAAATTTGAGAGGGCCAAGATCAGTCAGGGAACCAAGGTCCCGGAAGAAAAGACGACCAACACTGTCTCCAAATTTGACAACAATGGCAACAGAGACCGGATGAAACTGACCGATTTTAACTTCCTAATGGTGCTGGGGAAAGGCAGCTTTGGCAAGGTCATGCTTTCAGAACGAAAAGGCACAGATGAGCTCTATGCTGTGAAGATCCTGAAGAAGGACGTTGTGATCCAAGATGATGACGTGGAGTGCACTATGGTGGAGAAGCGGGTGTTGGCCCTGCCTGGGAAGCCGCCCTTCCTGACCCAGCTCCACTCCTGCTTCCAGACCATGGACCGCCTGTACTTTGTGATGGAGTACGTGAATGGGGGCGACCTCATGTATCACATCCAGCAAGTCGGCCGGTTCAAGGAGCCCCATGCTGTATTTTACGCTGCAGAAATTGCCATCGGTCTGTTCTTCTTACAGAGTAAGGGCATCATTTACCGTGACCTAAAACTTGACAACGTGATGCTCGATTCTGAGGGACACATCAAGATTGCCGATTTTGGCATGTGTAAGGAAAACATCTGGGATGGGGTGACAACCAAGACATTCTGTGGCACTCCAGACTACATCGCCCCCGAGATAATTGCTTATCAGCCCTATGGGAAGTCCGTGGATTGGTGGGCATTTGGAGTCCTGCTGTATGAAATGTTGGCTGGGCAGGCACCCTTTGAAGGGGAGGATGAAGATGAACTCTTCCAATCCATCATGGAACACAACGTAGCCTATCCCAAGTCTATGTCCAAGGAAGCTGTGGCCATCTGCAAAGGGCTGATGACCAAACACCCAGGCAAACGTCTGGGTTGTGGACCTGAAGGCGAACGTGATATCAAAGAGCATGCATTTTTCCGGTATATTGATTGGGAGAAACTTGAACGCAAAGAGATCCAGCCCCCTTATAAGCCAAAAGCTTGTGGGCGAAATGCTGAAAACTTCGACCGATTTTTCACCCGCCATCCACCAGTCCTAACACCTCCCGACCAGGAAGTCATCAGGAATATTGACCAATCAGAATTCGAAGGATTTTCCTTTGTTAACTCTGAATTTTTAAAACCCGAAGTCAAGAGCTAA MAAPRQIPSHIVRLKPSCSTDSSFTRTPVPTVSLASRELPVSSWQVTEPSSKNLWEQICKEYEAEQPPFPEGYKVKQEPVITVAPVEEMLFHGFSAEHYFPVSHFTMISRTPCPQDKSETINPKTCSPKEYLETFIFPVLLPGMASLLHQAKKEKCFERKRTKFIACDFLTEWLYNQNPKRAGEPFTEFFSIPFVEERLKQHPRPPIPLSLLLTEEEAALYIQSFWRACVVRCDPEIQELRQWQKKLREAKHIHQQVKIFWAKQEQKGPPQQTQV*DPHVLQPHVL*PLWVTAVWTHPPGDEM*HLHDECAQALRDECSQPVWHGPHGAPRPHLHPGPHRQGRPHCPRKRC*KPCTYGPQWPVRSLRKTETDSRSQK*EQTEDQNHQMLPQP*VE*DI*ISAERIGQRQKTVSRDLGLGFDQQE*LHGIFVLWDF*TSESQC*WLV*VTEPGGRRVLQCACATRRK*GQ*RTAAEI*EGQDQSGNQGPGRKDDQHCLQI*QQWQQRPDETDRF*LPNGAGERQLWQGHAFRTKRHR*ALCCEDPEEGRCDPR**RGVHYGGEAGVGPAWEAALPDPAPLLLPDHGPPVLCDGVREWGRPHVSHPASRPVQGAPCCILRCRNCHRSVLLTE*GHHLP*PKT*QRDARF*GTHQDCRFWHV*GKHLGWGDNQDILWHSRLHRPRDNCLSALWEVRGLVGIWSPAV*NVGWAGTL*RGG*R*TLPIHHGTQRSLSQVYVQGSCGHLQRADDQTPRQTSGLWT*RRT*YQRACIFPVY*LGET*TQRDPAPL*AKSLWAKC*KLRPIFHPPSTSPNTSRPGSHQEY*PIRIRRIFLC*L*IFKTRSQEL FALSE FALSE NA NA TRUE hsa-mir-1273h chr16:24203116-24203231:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Protein kinase C beta type AGC PKC PKCa P05771 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE protein kinase C beta 2 adult T-cell lymphoma-leukaemia leukaemia_lymphoma missense 32242 PDE4D::TAFA2 ENSG00000113448.21::ENSG00000198673.11 NCIH1651 SRR8615988 SRR8652139 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PDE4D ENSG00000113448.21 protein_coding - - chr5:58969038-60522120:- chr5:59180595:- chr5:58264865-59817947:- chr5:58476421:- TAFA2 ENSG00000198673.11 protein_coding - - chr12:61708273-62279150:- chr12:62023779:- chr12:62102054-62672931:- chr12:62417560:- chr5:59058651 chr12:62149219 NA NA chr5:58354478 chr12:62543000 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDE4D:Oncogene"] 4 5 4 3.13 ONLY_REF_SPLICE YES_LDAS 0.1059 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-582 chr5:59703606-59703703:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32244 MAP3K4::C6orf118 ENSG00000085511.20::ENSG00000112539.15 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1878 FALSE NA FALSE NA MAP3K4 ENSG00000085511.20 protein_coding + + chr6:160991727-161117385:+ chr6:160992083:+ chr6:161412759-161538417:+ chr6:161413115:+ C6orf118 ENSG00000112539.15 protein_coding - - chr6:165279664-165309605:- chr6:165290067:- chr6:165693153-165723094:- chr6:165703556:- chr6:161011148,chr6:161011146 chr6:165292234,chr6:165292236 NA NA chr6:161432180,chr6:161432178 chr6:165705723,chr6:165705725 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MEKK4_N-PARTIAL|51-152~|0^DUF2963|125-147|0.00015 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:4.16Mb] 40 14 40 13.79 ONLY_REF_SPLICE YES_LDAS 0.6717 GT 1.7465 AG 1.8295 ENST00000392142.9 1-152 ENST00000230301.9 1121-1410 chr6|+|[0]160991932-160992083[1]<==>chr6|-|[2]165280057-165280110[0]|[2]165281640-165281693[0]|[2]165289886-165290067[1] atgagagaagccgctgccgcgctggtccctcctcccgcctttgccgtcacgcctgccgccgccatggaggagccgccgccaccgccgccgccgccaccaccgccaccggaacccgagaccgagtcagaacccgagtgctgcttggcggcgagAATCATCTGAGAAACATATAATTGATGAAAACCGACTTACTCTTACTGAGAAGGTTGAAAAGAAGAGGTGTGAAATACTCAGTAAGTGGGATGAGATACAAGCTCTGGAAAAAGAAATTAAAACAACTTTGGTTCATACTGGAATTTCAGATATCACTGAGAATAGGATTAAAAGCATAGAGCATGAAGCTATACAATTGGAAACAGAAAATATGATTTTAAAGAAGAAAATAAAAGGGCCTTTGGAAATTTATCAAGGAATTTGTAAAATCAGAGGAAACAGAAGATAA MREAAAALVPPPAFAVTPAAAMEEPPPPPPPPPPPPEPETESEPECCLAARII*ETYN**KPTYSY*EG*KEEV*NTQ*VG*DTSSGKRN*NNFGSYWNFRYH*E*D*KHRA*SYTIGNRKYDFKEENKRAFGNLSRNL*NQRKQKI FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mitogen-activated protein kinase kinase kinase 4 STE STE11 Q9Y6R4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32245 SLC25A3::ANKS1B ENSG00000075415.15::ENSG00000185046.21 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1877 FALSE NA FALSE NA SLC25A3 ENSG00000075415.15 protein_coding + + chr12:98593591-98606379:+ chr12:98594135:+ chr12:98987369-99000157:+ chr12:98987913:+ ANKS1B ENSG00000185046.21 protein_coding - - chr12:98726457-99984936:- chr12:99246864:- chr12:99120235-100378714:- chr12:99640642:- chr12:98595407,chr12:98595391,chr12:98595406 chr12:99381178,chr12:99381180,chr12:99381179 NA NA chr12:98989185,chr12:98989169,chr12:98989184 chr12:99774956,chr12:99774958,chr12:99774957 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Mito_carr|66-150|6.7e-27 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.12Mb] 34 27 34 27 ONLY_REF_SPLICE YES_LDAS 0.7617 GT 1.7056 AG 1.8295 ENST00000550695.1 1-157 ENST00000683438.2 1757-3858 chr12|+|[0]98593979-98594135[0]<==>chr12|-|[2]98745739-98745849[0]|[2]98751355-98751522[0]|[2]98773042-98773179[0]|[2]98781117-98781203[0]|[2]98782126-98782137[0]|[2]98798934-98799005[0]|[2]98800997-98801125[0]|[2]98807844-98807918[0]|[2]98829174-98829353[0]|[2]98832029-98832136[0]|[2]99053157-99053309[0]|[2]99084925-99085023[0]|[2]99154289-99154395[1]|[0]99244342-99244414[0]|[2]99246275-99246864[1] atgttctcgtccgtggcgcacctggcgcgggcgaaccccttcaacacgccacatctgcagctggtgcacgatggtctcggggacctccgcagcagctccccagggcccacgggccagccccgccgccctcgcaacctggcagccgccgccgtggaagATGACCTCTCCCGACAGGATGACAATGATCCCCCAAAAGAATATGATCCTGGGCAATTTGCAGGCCTGCTCCATGGATCCTCTCCAGCCTGTGAGTCCCCTGAAAATCCATTTCATCTCTATGGGAAAAGAGAACAATGTGAAAAAGGACAAGATGAAGTCAGTTTGGCAAACAGTCCTTTGCCTTTCAAGCAGTCTCCAATAGAAAATAACTCAGAACCTTTGGTAAAGAAAATTAAACCCAAAGTGGTCAGTAGAACAATTTTTCACAAAAAAAGCAACCAACTCGAAAACCATACCATTGTTGGCACAAGATCAACCAGGAGTGGATCTCGGAATGGGGACCAGTGGGTTATGAACGCAGGGGGATTTGTGGAGAGAGCCTGTACTCTGGGGAGAATAAGGTCATTGCCTAAAGCCTTGATCGACATGCATTTGTCAAAAAGTGTCTCTAAATCTGATTCTGATCTCATTGCCTATCCTTCCAATGAGAAAACATCAAGAGTTAACTGGAGTGAATCTTCCACTGCTGAACACAGTTCTAAAGGGAATTCTGAAAGAACACCATCCTTCACATCGGAATGGGAAGAAATTGACAAAATAATGAGTTCCATAGATGTTGGAATCAACAACGAACTTAAAGAGATGAATGGTGAGACCACAAGACCCAGATGCCCTGTCCAAACAGTGGGACAATGGTTGGAAAGCATTGGGCTACCTCAGTACGAGAACCACCTGATGGCTAATGGATTTGACAATGTGCAGTTTATGGGAAGCAATGTTATGGAAGATCAGGATTTGTTGGAAATTGGAATCCTTAATTCTGGGCACAGACAAAGAATTCTACAGGCAATCCAGCTCCTTCCAAAGATGAGACCCATTGGGCATGATGGCTACCATCCCACCTCTGTAGCTGAGTGGCTGGATTCCATTGAACTGGGCGACTACACCAAAGCCTTTCTAATTAATGGCTACACTTCGATGGACCTGTTGAAAAAAATCTGGGAGGTTGAACTTATTAATGTTTTAAAAATCAATTTGATTGGCCACAGGAAACGTATTTTGGCATCTCTGGGAGACAGGCTGCACGACGATCCCCCACAGAAGCCCCCTCGGTCCATCACCCTCAGGGAACCCAGTGGTAATCACACTCCTCCTCAGTTGTCTCCATCACTTAGCCAAAGCACTTACACCACTGGTGGCTCCCTAGACGTTCCTCACATTATCATGCAGGGCGATGCAAGGAGGAGAAGAAATGAAAACTACTTTGATGATATTCCCCGATCAAAACTGGAGAGGCAGATGGCTCAGCAGTCGTCTGTCTGTGAAATATGGACGAATCAGAACGCAGGATTTCCTTTCTCAGCGATCCATCAGGTTCATAATACAGGAGACTGGGGAGAACCTTCCATTACCTTGCGACCTCCGAATGAAGCCACAGCCTCTACCCCGGTACAGTACTGGCAGCATCACCCAGAAAAGCTTATCTTCCAGTCGTGTGATTACAAAGCTTTTTATTTAGGTTCTATGCTGATAAAAGAGCTTAGGGGGACAGAATCAACCCAAGATGCTTGTGCAAAAATGCGGGCTAACTGTCAGAAGTCTACAGAGCAAATGAAGAAGGTCCCTACTATTATTCTTTCTGTCTCATATAAAGGAGTCAAATTTATTGATGCAACAAATAAGAACATAATTGCTGAGCATGAAATTCGTAATATCTCCTGTGCTGCCCAGGACCCAGAAGACCTCTCAACATTTGCCTATATCACAAAAGATTTGAAGTCTAATCACCACTACTGTCATGTGTTTACTGCCTTTGATGTGAATTTAGCCTATGAAATCATCCTAACCCTGGGACAGGCATTCGAAGTCGCTTACCAGCTAGCACTACAAGCAAGAAAAGGGGGACACTCCTCCACACTTCCAGAAAGCTTTGAAAACAAACCCTCCAAACCCATCCCCAAGCCCCGCGTTAGCATTCGCAAGTCCGTGCAGATCGACCCATCTGAGCAAAAGACTCTGGCCAATCTACCGTGGATTGTGGAGCCGGGCCAAGAAGCCAAGAGGGGCATTAATACCAAGTATGAAACCACGATTTTCTGA MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSPGPTGQPRRPRNLAAAAVEDDLSRQDDNDPPKEYDPGQFAGLLHGSSPACESPENPFHLYGKREQCEKGQDEVSLANSPLPFKQSPIENNSEPLVKKIKPKVVSRTIFHKKSNQLENHTIVGTRSTRSGSRNGDQWVMNAGGFVERACTLGRIRSLPKALIDMHLSKSVSKSDSDLIAYPSNEKTSRVNWSESSTAEHSSKGNSERTPSFTSEWEEIDKIMSSIDVGINNELKEMNGETTRPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIWEVELINVLKINLIGHRKRILASLGDRLHDDPPQKPPRSITLREPSGNHTPPQLSPSLSQSTYTTGGSLDVPHIIMQGDARRRRNENYFDDIPRSKLERQMAQQSSVCEIWTNQNAGFPFSAIHQVHNTGDWGEPSITLRPPNEATASTPVQYWQHHPEKLIFQSCDYKAFYLGSMLIKELRGTESTQDACAKMRANCQKSTEQMKKVPTIILSVSYKGVKFIDATNKNIIAEHEIRNISCAAQDPEDLSTFAYITKDLKSNHHYCHVFTAFDVNLAYEIILTLGQAFEVAYQLALQARKGGHSSTLPESFENKPSKPIPKPRVSIRKSVQIDPSEQKTLANLPWIVEPGQEAKRGINTKYETTIF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32246 MED29::FREM2 ENSG00000063322.15::ENSG00000150893.11 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1879 FALSE NA FALSE NA MED29 ENSG00000063322.15 protein_coding + + chr19:39391303-39400641:+ chr19:39393637:+ chr19:39881943-39891281:+ chr19:39884277:+ FREM2 ENSG00000150893.11 protein_coding + + chr13:38687077-38887131:+ chr13:38880284:+ chr13:39261214-39461268:+ chr13:39454421:+ chr19:39396659 chr13:38879124 NA NA chr19:39887299 chr13:39453261 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Med29|73-207|6.5e-57^Med2|87-155|2.6e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr13] 21 9 21 9 ONLY_REF_SPLICE YES_LDAS 0.3746 GT 1.8062 AG 1.9086 ENST00000615911.4 1-423 ENST00000280481.9 9007-9510 chr19|+|[0]39391360-39391638[2]|[0]39392464-39392522[1]|[2]39393553-39393637[2]<==>chr13|+|[0]38880284-38880787[2] atgctgaaaagcaacggggagagacgcagtcgtaacgcacttccggcggtctacgcgaggaagatggctgcatcccagcagcaagcttcagcggcttcctcagctgctggtgtatcgggtcctagttcggctggcggcccgggtccccagcagcagccgcaaccgccagcacaactggtgggccctgcccagagcggcctcctgcagcaacagcaacaggacttcgatcctgtgcagcgttataagatgctcatcccgcagctgaaggagagtctacagaccttgatgaaggttgcggcccaaaacttgattcagaacactaacatcgacaatggacaaaagagcagtgatggacccatacagcgctttgacaagtgcctggaagagttctatgcactctgtgaccagctggagctgtgcctgGTCGCTCTAGGCCGAGAATGGTATATACATACGATCTATACAGTGAGATCGAAAGACAATGCCAATCGAGGTATTGGCAAAAGAAGTGTGGAGTACCATTCTCTGGTGAGTCAAGGAAAGCCCCAATCCACCACCAAGAGCCGGAAGAAGAGAGAGATCAGGAGCACACCCTCACTGGCATGGGAGATTGGTGCTGAAAACAGTCGAGGAACAAACATCCAGCACATTGCCCTGGACCGCACCAAGAGGCAGATCCCCCATGGGAGAGCACCTCCAGATGGCATCCTCCCCTGGGAGCTCAACAGCCCCAGCTCTGCAGTCAGCCTGGTCACTGTGGTGGGAGGCACCACGGTAGGGTTACTCACCATCTGCCTCACTGTCATTGCAGTGCTGATGTGCAGGGGCAAGGAAAGTTTCAGGGGGAAGGATGCCCCGAAAGGCTCCAGCAGCAGTGAGCCCATGGTGCCCCCACAGAGCCATCACAATGACAGCTCAGAAGTTTGA MLKSNGERRSRNALPAVYARKMAASQQQASAASSAAGVSGPSSAGGPGPQQQPQPPAQLVGPAQSGLLQQQQQDFDPVQRYKMLIPQLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYALCDQLELCLVALGREWYIHTIYTVRSKDNANRGIGKRSVEYHSLVSQGKPQSTTKSRKKREIRSTPSLAWEIGAENSRGTNIQHIALDRTKRQIPHGRAPPDGILPWELNSPSSAVSLVTVVGGTTVGLLTICLTVIAVLMCRGKESFRGKDAPKGSSSSEPMVPPQSHHNDSSEV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32248 TMC6::TK1 ENSG00000141524.19::ENSG00000167900.12 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1880 FALSE NA FALSE NA TMC6 ENSG00000141524.19 protein_coding - - chr17:78107397-78132407:- chr17:78128612:- chr17:76103478-76128488:- chr17:76124693:- TK1 ENSG00000167900.12 protein_coding - - chr17:78174091-78187233:- chr17:78175618:- chr17:76170172-76183314:- chr17:76171699:- chr17:78128212,chr17:78128214 chr17:78178478,chr17:78178480 NA NA chr17:76124293,chr17:76124295 chr17:76174559,chr17:76174561 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TK1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.04Mb];LOCAL_REARRANGEMENT:-:[41668] 15 7 15 6.74 ONLY_REF_SPLICE YES_LDAS 0.2715 GT 1.4716 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 76124693 TRUE 76171699 TRUE YES 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32251 PRDM15::CRYZL1 ENSG00000141956.14::ENSG00000205758.12 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1881 FALSE NA FALSE NA PRDM15 ENSG00000141956.14 protein_coding - - chr21:41798225-41879482:- chr21:41821903:- chr21:43218385-43299591:- chr21:43242259:- CRYZL1 ENSG00000205758.12 protein_coding - - chr21:33589341-33643926:- chr21:33631557:- chr21:34961647-35016232:- chr21:35003863:- chr21:41821466,chr21:41821466,chr21:41821469 chr21:33642277,chr21:33642273,chr21:33642277 NA NA chr21:43241822,chr21:43241822,chr21:43241825 chr21:35014583,chr21:35014579,chr21:35014583 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf_PR_Knuckle|11-37|9.9e-08^PRDM2_PR|120-234|1.4e-38^SET|128-224|5.2e-08^BolA|258-281|2.8^zf-H2C2_2|260-272|0.22^zf-C2H2_jaz|262-283|0.032^zf-met|263-284|0.079^zf-C2H2_4|264-285|0.00068^zf-C2H2|265-285|0.2^zf-C2H2_6|265-282|0.00059^zf-C2H2_3rep|265-290|2.9^Zap1_zf1|268-283|0.0048^zf-C2H2_6|429-436|4.3^zf-C2H2_3rep|431-510|0.0038^BolA|434-456|0.1^zf-H2C2_2|436-447|0.018^zf-C2H2_6|437-460|0.0043^zf-C2H2|438-460|1.4e-08^zf-C2H2_4|438-460|4.9e-07^zf-met|438-460|0.00012^zf-C2HC_2|439-459|0.0048^GAGA|439-457|0.016^zf-C2H2_jaz|440-460|0.00013^zf-C2H2_3rep|440-562|1.5^Zap1_zf1|443-457|0.019^zf-H2C2_2|452-476|1.1e-05^zf-C2H2|465-488|1.1e-05^zf-C2H2_4|465-488|5.2e-05^zf-C2H2_jaz|465-484|0.0001^zf-met|465-484|0.013^zf-C2H2_6|465-483|0.027^Zap1_zf1|469-488|0.006^zf-H2C2_2|481-508|0.001^zf-C2H2_6|498-518|0.0058^zf-C2H2|499-515|0.019^zf-C2H2_4|499-517|0.11^zf-C2H2_jaz|499-517|0.013^zf-met|499-517|0.042^zf-C2HC_2|500-511|1.2^Zap1_zf1|504-517|0.84^zf-H2C2_2|523-531|2.5^zf-C2H2|526-548|2e-06^zf-C2H2_4|526-548|4.9e-06^zf-C2H2_jaz|526-546|0.28^zf-met|526-545|0.98^zf-C2H2_6|526-548|0.13^GAGA|527-544|8^Zap1_zf1|531-544|1^zf-H2C2_2|540-563|6.5e-06^BolA|541-572|0.13^zf-C2H2_jaz|552-573|0.0011^zf-C2H2|553-575|2.3e-05^zf-C2H2_4|553-575|0.00031^zf-met|553-573|0.00011^zf-C2H2_6|553-576|0.018^zf-C2HC_2|554-573|0.072^GAGA|600-621|0.012^zf-C2H2|604-624|7.1e-06^zf-C2H2_4|604-624|6.1e-07^zf-H2C2_2|604-613|0.082^zf-C2H2_jaz|604-621|0.26^zf-met|604-621|0.00025^zf-C2H2_6|604-624|0.0015^zf-C2HC_2|604-609|3^Zap1_zf1|607-622|0.38^zf-C2H2_3rep|609-647|0.095^zf-H2C2_2|616-639|1.6e-05^zf-C2H2_jaz|628-648|0.027^zf-C2H2|629-651|7.7e-06^zf-C2H2_4|629-651|7.8e-05^zf-met|629-648|0.00076^zf-C2H2_6|629-647|0.025^zf-C2HC_2|630-648|4.3e-06^zf-C2H2_3rep|630-702|0.0048^Zap1_zf1|643-648|3.7^zf-C2H2_jaz|650-663|1.3^SET|662-752|2.8^zf-H2C2_2|691-701|3.1^zf-C2H2_jaz|691-711|1.9^zf-C2H2|692-715|0.00074^zf-C2H2_4|692-715|0.0012^zf-met|692-710|0.2^zf-C2H2_6|692-705|0.65^zf-C2H2_3rep|693-775|0.003^zf-H2C2_2|709-729|0.0071^zf-C2H2_4|720-742|0.0002^zf-C2H2_6|720-729|0.009^zf-C2H2|722-742|0.00042^zf-C2H2_jaz|722-739|0.042^zf-met|722-739|0.0086^zf-C2HC_2|722-731|0.0023^zf-H2C2_2|738-767|0.0082^zf-C2H2|756-778|1.6e-06^zf-C2H2_4|756-778|4.2e-06^zf-C2H2_6|756-775|0.00029^zf-C2HC_2|756-767|9.1e-05^zf-C2H2_jaz|758-775|0.0022^zf-met|758-774|0.00073^GAGA|758-774|3.5^BolA|759-782|0.51^zf-H2C2_2|770-795|2.6e-10^zf-C2H2|784-806|4e-09^zf-C2H2_jaz|784-804|0.014^zf-C2H2_6|784-806|0.00014^zf-C2H2_4|785-806|7.9e-07^zf-C2HC_2|785-804|0.095^zf-met|786-804|0.013^Zap1_zf1|788-803|0.064^BolA|791-813|2.2^DUF6434|795-836|5.9e-05^zf-H2C2_2|798-820|5.4e-07^zf-C2H2|812-834|5.8e-05^zf-C2H2_4|812-834|2.6e-05^zf-C2H2_6|812-835|0.0054^zf-C2H2_jaz|814-832|0.008^zf-met|814-831|5.4^zf-H2C2_2|827-851|2.7e-07^zf-C2H2_3rep|838-878|3.1^zf-C2H2|840-862|0.00034^zf-C2H2_4|840-862|0.00031^zf-C2H2_jaz|840-860|0.36^zf-met|840-859|0.23^zf-C2H2_6|840-862|0.0011^zf-C2HC_2|841-852|0.18^zf-H2C2_2|857-878|6.2e-07^BolA|860-892|0.11^DUF6434|865-878|2.6^zf-C2H2|868-890|1.2e-05^zf-C2H2_4|868-890|5.2e-06^zf-C2H2_jaz|868-887|5.6e-06^zf-met|868-886|0.00022^zf-C2H2_6|868-887|0.027^zf-C2HC_2|870-877|0.086^Zap1_zf1|873-886|0.6^zf-H2C2_2|883-907|1.6e-06^zf-C2H2_jaz|895-915|4.5e-05^zf-met|896-916|0.00041^zf-C2H2|897-919|1.4e-05^zf-C2H2_4|897-919|0.00019^zf-C2HC_2|897-909|1.3^zf-C2H2_6|898-914|0.0091^zf_PR_Knuckle|898-906|0.82^zf-C2H2_3rep|898-951|0.0086^Zap1_zf1|901-919|0.018^zf-H2C2_2|910-931|2.6^zf-C2H2|926-948|4.5e-05^zf-C2H2_4|926-948|5.6e-05^zf-C2H2_jaz|927-945|0.9^zf-met|927-945|0.017^zf-C2H2_6|939-948|7.9^zf-H2C2_2|940-949|0.46 ADH_N-PARTIAL|~67-146|1.7e-07^ADH_zinc_N|182-248|1.4e-09 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:8.15Mb] 13 6 13 6 ONLY_REF_SPLICE YES_LDAS 0.2372 GT 1.8892 AG 1.9086 ENST00000269844.5 1-2094 ENST00000361534.6 67-978 chr21|-|[2]41821903-41822037[0]|[2]41823318-41823449[0]|[2]41825960-41826054[1]|[0]41828166-41828333[1]|[0]41835437-41835524[0]|[2]41836113-41836207[1]|[0]41836468-41836649[2]|[1]41837934-41838063[1]|[0]41839623-41839853[1]|[0]41847090-41847191[1]|[0]41854566-41854818[0]|[2]41857176-41857329[2]|[1]41859031-41859228[2]|[1]41859592-41859685[1]|[0]41860327-41860363[0]<==>chr21|-|[2]33595613-33595614[1]|[0]33595731-33595836[0]|[2]33597280-33597401[1]|[0]33599150-33599248[1]|[0]33602234-33602345[0]|[2]33603404-33603537[1]|[0]33613538-33613606[1]|[0]33616706-33616750[1]|[0]33621996-33622068[0]|[2]33624683-33624760[0]|[2]33631486-33631557[0] atggctgaagatgggagcgaagagatcatgttcatctggtgtgaagactgcagccagtaccacgactccgaatgtcccgagctgggcccagtggtcatggtcaaagactcctttgtgttaagcagggcaaggtcttggcctgccagcggacacgtgcacacccaggcggggcaggggatgcggggttatgaggacagggacagggctgacccacagcagcttccagaagcagtccctgcaggcctggtgaggcggctcagtgggcagcagctgccctgccgttccaccctcacctgggggaggctgtgccacctggtggcccagggcaggtcatcccttcctcccaacttggagatcagacgactggaagatggagccgagggggtgttcgccatcactcagctcgtcaagcggacacagttcggtccctttgagtccaggagggtcgccaaatgggaaaaggagtctgcatttcccctgaaggtgttccagaaggacgggcaccccgtgtgcttcgacacctccaacgaggatgactgcaactggatgatgctggtgcggccagcggcggaggccgagcaccagaacctgacggcctaccagcacggcagcgacgtgtacttcaccacctccagagacatccccccgggtaccgagctgcgcgtgtggtatgcggccttctatgccaagaagatggacaagcccatgctgaagcaggccggctctggcgtccacgctgcaggcaccccagaaaacagcgcccccgtggagtcggagcccagccagtgggcgtgtaaagtgtgttctgccaccttcctggagctgcagctcctcaatgaacatctgttgggccacttagaacaagccaaaagccttcctccaggcagccaaagcgaggcagcagctcccgagaaggagcaggacacaccccggggggaaccccctgcagtgcccgagagcgagaatgttgccaccaaagaacagaagaaaaagcctcgaagggggagaaaacccaaagtgtccaaagctgagcagcctctagtcatcgtggaagacaaggaacccacagagcaagtggcagagatcattaccgaggtccctccggatgagcctgtgagtgcaacgccagatgagcggatcatggagctggttctggggaagctggccaccaccaccactgacaccagctcggttccaaagttcacccatcatcagaataacaccatcacgctcaagaggagcttaattctctcaagcagacacggcatccggcgcaagctcatcaaacagctcggggagcacaagcgggtttaccagtgcaatatctgcagcaagatcttccagaacagcagcaacctgagcaggcacgtgcgctcgcatggtgacaagctgtttaagtgcgaagagtgtgcaaaattgttcagccgcaaagagagcctaaagcagcacgtttcctacaagcacagcaggaacgaggtggacggcgagtacaggtaccgctgcggcacttgtgagaagaccttccgcatcgagagcgcgctggagttccacaactgcaggacagatgacaagacgttccaatgtgagatgtgtttcagattcttctccaccaacagcaacctctccaagcacaagaagaagcacggcgacaagaagtttgcctgtgaggtctgcagcaagatgttctaccgcaaggacgtcatgctggaccaccagcgccggcacctggaaggagtgcggcgagtgaagcgagaggacctggaggccggtggggagaacctggtccgttacaagaaggagccttccgggtgcccggtgtgtggcaaggtgttctcctgccggagcaatatgaacaagcacctgctcacccacggcgacaagaagtacacctgcgagatctgcgggcgcaagttcttccgcgtggatgtgctcagggaccacatccatgtccacttcaaggacatcgcgttgatggatgaccaccagagggaagagtttatcggcaagatcgggatctcctcggaagaaaacgatgacaattctgacgagagcgcagactcggagcctcacaagtacagctgcaagcggtgccagGTGACTATGAAAGGCTTATATTTCCAACAGAGTTCCACAGATGAAGAAATAACATTTGTATTTCAAGAAAAGGAAGATCTTCCTGTTACAGAGGATAACTTTGTGAAACTTCAAGTTAAAGCTTGTGCTCTGAGCCAGATAAATACAAAGCTTCTGGCAGAAATGAAGATGAAAAAGGATTTATTTCCTGTTGGGAGAGAAATTGCTGGAATTGTATTAGATGTTGGAAGCAAGGTATCATTCTTTCAACCAGATGATGAAGTAGTTGGAATTTTGCCCCTGGACTCTGAAGACCCTGGACTTTGTGAAGTTGTTAGAGTACATGAGCATTACTTGGTTCATAAACCAGAAAAGGTCACATGGACGGAAGCAGCAGGAAGCATTCGGGATGGAGTGCGTGCCTATACAGCTCTGCATTATCTTTCTCATCTCTCTCCTGGAAAATCAGTGCTGATAATGGATGGAGCAAGTGCATTTGGTACAATAGCTATTCAGTTAGCACATCATAGAGGAGCCAAAGTGATTTCAACAGCATGCAGCCTTGAAGATAAGCAGTGCCTTGAAAGATTCAGACCTCCCATAGCCCGAGTGATTGATGTATCTAATGGGAAAGTTCATGTTGCTGAAAGCTGTTTGGAAGAAACAGGTGGCCTGGGAGTAGATATTGTCCTAGATGCTGGAGTGAGATTATATAGTAAAGATGATGAACCAGCTGTAAAACTACAACTACTACCACATAAACATGATATCATCACACTTCTTGGTGTTGGAGGCCACTGGGTAACAACAGAAGAAAACCTTCAGTTGGATCCTCCAGATAGCCACTGCCTTTTCCTCAAGGGAGCAACGTTAGCTTTCCTGAATGATGAAGTTTGGAATTTGTCAAATGTACAACAGGGAAAATATCTTTAG MAEDGSEEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRARSWPASGHVHTQAGQGMRGYEDRDRADPQQLPEAVPAGLVRRLSGQQLPCRSTLTWGRLCHLVAQGRSSLPPNLEIRRLEDGAEGVFAITQLVKRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAAFYAKKMDKPMLKQAGSGVHAAGTPENSAPVESEPSQWACKVCSATFLELQLLNEHLLGHLEQAKSLPPGSQSEAAAPEKEQDTPRGEPPAVPESENVATKEQKKKPRRGRKPKVSKAEQPLVIVEDKEPTEQVAEIITEVPPDEPVSATPDERIMELVLGKLATTTTDTSSVPKFTHHQNNTITLKRSLILSSRHGIRRKLIKQLGEHKRVYQCNICSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGTCEKTFRIESALEFHNCRTDDKTFQCEMCFRFFSTNSNLSKHKKKHGDKKFACEVCSKMFYRKDVMLDHQRRHLEGVRRVKREDLEAGGENLVRYKKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQVTMKGLYFQQSSTDEEITFVFQEKEDLPVTEDNFVKLQVKACALSQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKVSFFQPDDEVVGILPLDSEDPGLCEVVRVHEHYLVHKPEKVTWTEAAGSIRDGVRAYTALHYLSHLSPGKSVLIMDGASAFGTIAIQLAHHRGAKVISTACSLEDKQCLERFRPPIARVIDVSNGKVHVAESCLEETGGLGVDIVLDAGVRLYSKDDEPAVKLQLLPHKHDIITLLGVGGHWVTTEENLQLDPPDSHCLFLKGATLAFLNDEVWNLSNVQQGKYL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32254 MAP7::IGF2R ENSG00000135525.19::ENSG00000197081.16 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1883 FALSE NA FALSE NA MAP7 ENSG00000135525.19 protein_coding - - chr6:136342281-136550819:- chr6:136550342:- chr6:136663419-136871957:- chr6:136871480:- IGF2R ENSG00000197081.16 protein_coding + + chr6:159969082-160113507:+ chr6:159991184:+ chr6:160390114-160534539:+ chr6:160412216:+ chr6:136467959,chr6:136467965 chr6:159975876,chr6:159975870 NA NA chr6:136789097,chr6:136789103 chr6:160396908,chr6:160396902 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MAP7-PARTIAL|65-67~|1 CIMR-PARTIAL|~150-265|3.6e-20^ATG27-PARTIAL|~150-164|5e-05^PRKCSH_1-PARTIAL|~150-167|0.14^ATG27|172-326|1.1e-07^CIMR|281-420|6.2e-22^PRKCSH_1|303-326|0.17^Man-6-P_recep|327-476|9e-11^ATG27|358-472|0.00042^PRKCSH_1|409-466|0.0069^CIMR|424-573|8.2e-55^ATG27|473-624|1.4e-11^Man-6-P_recep|487-620|9.2e-05^PRKCSH_1|558-618|0.0012^CIMR|576-715|3.9e-44^ATG27|625-762|2.4e-11^Man-6-P_recep|639-764|1.2e-08^CIMR|723-875|3.4e-33^ATG27|765-932|2e-09^CIMR|885-1023|5.4e-10^ATG27|1009-1048|0.075^CIMR|1032-1178|2.9e-63^ATG27|1079-1219|7.8e-05^PRKCSH_1|1166-1218|0.0055^CIMR|1183-1319|1.4e-16^Man-6-P_recep|1216-1364|1.1e-06^ATG27|1226-1362|3.5e-07^PRKCSH_1|1310-1365|0.0004^CIMR|1323-1462|4.4e-58^ATG27|1368-1520|1.6e-06^Man-6-P_recep|1440-1510|0.051^PRKCSH_1|1452-1507|0.00088^CIMR|1466-1599|3e-25^ATG27|1515-1652|0.0002^PRKCSH_1|1569-1648|0.033^Man-6-P_recep|1586-1654|0.044^CIMR|1607-1730|2.8e-21^Glyco_hydro_5_C|1624-1651|0.55^ATG27|1647-1715|3.6e-06^CIMR|1758-1894|4.8e-22^Man-6-P_recep|1759-1799|0.018^PRKCSH_1|1780-1817|0.065^Glyco_hydro_5_C|1781-1797|6^fn2|1903-1942|1.3e-20^CIMR|1949-2082|3.6e-20^Man-6-P_recep|1949-1991|1.7^PRKCSH_1|1950-1999|0.098^ATG27|1992-2130|9.1e-08^Man-6-P_recep|2023-2132|0.0042^PRKCSH_1|2064-2132|0.011^CIMR|2087-2232|4e-10^Glyco_hydro_5_C|2097-2127|0.0015^Man-6-P_recep|2159-2279|0.00023^ATG27|2193-2307|0.0038^Glyco_hydro_5_C|2208-2245|2.8^CIMR|2240-2279|1.5e-08^PRKCSH_1|2261-2278|0.64^Glyco_hydro_5_C|2347-2377|2.2 ["IGF2R:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:23.42Mb] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1249 GT 1.7819 AG 1.9329 ENST00000618822.4 1-67 ENST00000356956.6 150-7476 chr6|-|[0]136550342-136550408[0]<==>chr6|+|[2]159991184-159991323[0]|[1]160009010-160009134[2]|[0]160010687-160010785[2]|[0]160024572-160024704[0]|[1]160027185-160027314[1]|[2]160029550-160029655[2]|[0]160032551-160032713[0]|[1]160032942-160033107[1]|[2]160034419-160034522[0]|[1]160040560-160040724[0]|[1]160043148-160043288[0]|[1]160044514-160044657[0]|[1]160045745-160045882[0]|[1]160046498-160046645[1]|[2]160047159-160047336[2]|[0]160047792-160047907[1]|[2]160048375-160048543[2]|[0]160050473-160050652[2]|[0]160056424-160056525[2]|[0]160058023-160058124[2]|[0]160058906-160059098[0]|[1]160060547-160060717[0]|[1]160061503-160061646[0]|[1]160061753-160061928[2]|[0]160062532-160062619[0]|[1]160063415-160063630[0]|[1]160064401-160064531[2]|[0]160064804-160064901[1]|[2]160068249-160068385[0]|[1]160069868-160070058[2]|[0]160071910-160072036[0]|[1]160072765-160072884[0]|[1]160073213-160073469[2]|[0]160073757-160073975[2]|[0]160075847-160075996[2]|[0]160078201-160078362[2]|[0]160079580-160079787[0]|[1]160080129-160080275[0]|[1]160083950-160084184[1]|[2]160084995-160085131[0]|[1]160088033-160088147[1]|[2]160089107-160089253[1]|[2]160089916-160090103[0]|[1]160096439-160096625[1]|[2]160102519-160102671[1]|[2]160103746-160103815[2]|[0]160104674-160105084[2] atggcggagctaggagctggcggcgacggccacaggggcggcgacggcgcagtgcgaagcgaaacagTTATACATGGGAAGCTGTTGATACCAAAAATAATGTACTTTATAAAATCAACATCTGTGGAAGTGTGGATATTGTCCAGTGCGGGCCATCAAGTGCTGTTTGTATGCACGACTTGAAGACACGCACTTATCATTCAGTGGGTGACTCTGTTTTGAGAAGTGCAACCAGATCTCTCCTGGAATTCAACACAACAGTGAGCTGTGACCAGCAAGGCACAAATCACAGAGTCCAGAGCAGCATTGCCTTCCTGTGTGGGAAAACCCTGGGAACTCCTGAATTTGTAACTGCAACAGAATGTGTGCACTACTTTGAGTGGAGGACCACTGCAGCCTGCAAGAAAGACATATTTAAAGCAAATAAGGAGGTGCCATGCTATGTGTTTGATGAAGAGTTGAGGAAGCATGATCTCAATCCTCTGATCAAGCTTAGTGGTGCCTACTTGGTGGATGACTCCGATCCGGACACTTCTCTATTCATCAATGTTTGTAGAGACATAGACACACTACGAGACCCAGGTTCACAGCTGCGGGCCTGTCCCCCCGGCACTGCCGCCTGCCTGGTAAGAGGACACCAGGCGTTTGATGTTGGCCAGCCCCGGGACGGACTGAAGCTGGTGCGCAAGGACAGGCTTGTCCTGAGTTACGTGAGGGAAGAGGCAGGAAAGCTAGACTTTTGTGATGGTCACAGCCCTGCGGTGACTATTACATTTGTTTGCCCGTCGGAGCGGAGAGAGGGCACCATTCCCAAACTCACAGCTAAATCCAACTGCCGCTATGAAATTGAGTGGATTACTGAGTATGCCTGCCACAGAGATTACCTGGAAAGTAAAACTTGTTCTCTGAGCGGCGAGCAGCAGGATGTCTCCATAGACCTCACACCACTTGCCCAGAGCGGAGGTTCATCCTATATTTCAGATGGAAAAGAATATTTGTTTTATTTGAATGTCTGTGGAGAAACTGAAATACAGTTCTGTAATAAAAAACAAGCTGCAGTTTGCCAAGTGAAAAAGAGCGATACCTCTCAAGTCAAAGCAGCAGGAAGATACCACAATCAGACCCTCCGATATTCGGATGGAGACCTCACCTTGATATATTTTGGAGGTGATGAATGCAGCTCAGGGTTTCAGCGGATGAGCGTCATAAACTTTGAGTGCAATAAAACCGCAGGTAACGATGGGAAAGGAACTCCTGTATTCACAGGGGAGGTTGACTGCACCTACTTCTTCACATGGGACACGGAATACGCCTGTGTTAAGGAGAAGGAAGACCTCCTCTGCGGTGCCACCGACGGGAAGAAGCGCTATGACCTGTCCGCGCTGGTCCGCCATGCAGAACCAGAGCAGAATTGGGAAGCTGTGGATGGCAGTCAGACGGAAACAGAGAAGAAGCATTTTTTCATTAATATTTGTCACAGAGTGCTGCAGGAAGGCAAGGCACGAGGGTGTCCCGAGGACGCGGCAGTGTGTGCAGTGGATAAAAATGGAAGTAAAAATCTGGGAAAATTTATTTCCTCTCCCATGAAAGAGAAAGGAAACATTCAACTCTCTTATTCAGATGGTGATGATTGTGGTCATGGCAAGAAAATTAAAACTAATATCACACTTGTATGCAAGCCAGGTGATCTGGAAAGTGCACCAGTGTTGAGAACTTCTGGGGAAGGCGGTTGCTTTTATGAGTTTGAGTGGCACACAGCTGCGGCCTGTGTGCTGTCTAAGACAGAAGGGGAGAACTGCACGGTCTTTGACTCCCAGGCAGGGTTTTCTTTTGACTTATCACCTCTCACAAAGAAAAATGGTGCCTATAAAGTTGAGACAAAGAAGTATGACTTTTATATAAATGTGTGTGGCCCGGTGTCTGTGAGCCCCTGTCAGCCAGACTCAGGAGCCTGCCAGGTGGCAAAAAGTGATGAGAAGACTTGGAACTTGGGTCTGAGTAATGCGAAGCTTTCATATTATGATGGGATGATCCAACTGAACTACAGAGGCGGCACACCCTATAACAATGAAAGACACACACCGAGAGCTACGCTCATCACCTTTCTCTGTGATCGAGACGCGGGAGTGGGCTTCCCTGAATATCAGGAAGAGGATAACTCCACCTACAACTTCCGGTGGTACACCAGCTATGCCTGCCCGGAGGAGCCCCTGGAATGCGTAGTGACCGACCCCTCCACGCTGGAGCAGTACGACCTCTCCAGTCTGGCAAAATCTGAAGGTGGCCTTGGAGGAAACTGGTATGCCATGGACAACTCAGGGGAACATGTCACGTGGAGGAAATACTACATTAACGTGTGTCGGCCTCTGAATCCAGTGCCGGGCTGCAACCGATATGCATCGGCTTGCCAGATGAAGTATGAAAAAGATCAGGGCTCCTTCACTGAAGTGGTTTCCATCAGTAACTTGGGAATGGCAAAGACCGGCCCGGTGGTTGAGGACAGCGGCAGCCTCCTTCTGGAATACGTGAATGGGTCGGCCTGCACCACCAGCGATGGCAGACAGACCACATATACCACGAGGATCCATCTCGTCTGCTCCAGGGGCAGGCTGAACAGCCACCCCATCTTTTCTCTCAACTGGGAGTGTGTGGTCAGTTTCCTGTGGAACACAGAGGCTGCCTGTCCCATTCAGACAACGACGGATACAGACCAGGCTTGCTCTATAAGGGATCCCAACAGTGGATTTGTGTTTAATCTTAATCCGCTAAACAGTTCGCAAGGATATAACGTCTCTGGCATTGGGAAGATTTTTATGTTTAATGTCTGCGGCACAATGCCTGTCTGTGGGACCATCCTGGGAAAACCTGCTTCTGGCTGTGAGGCAGAAACCCAAACTGAAGAGCTCAAGAATTGGAAGCCAGCAAGGCCAGTCGGAATTGAGAAAAGCCTCCAGCTGTCCACAGAGGGCTTCATCACTCTGACCTACAAAGGGCCTCTCTCTGCCAAAGGTACCGCTGATGCTTTTATCGTCCGCTTTGTTTGCAATGATGATGTTTACTCAGGGCCCCTCAAATTCCTGCATCAAGATATCGACTCTGGGCAAGGGATCCGAAACACTTACTTTGAGTTTGAAACCGCGTTGGCCTGTGTTCCTTCTCCAGTGGACTGCCAAGTCACCGACCTGGCTGGAAATGAGTACGACCTGACTGGCCTAAGCACAGTCAGGAAACCTTGGACGGCTGTTGACACCTCTGTCGATGGGAGAAAGAGGACTTTCTATTTGAGCGTTTGCAATCCTCTCCCTTACATTCCTGGATGCCAGGGCAGCGCAGTGGGGTCTTGCTTAGTGTCAGAAGGCAATAGCTGGAATCTGGGTGTGGTGCAGATGAGTCCCCAAGCCGCGGCGAATGGATCTTTGAGCATCATGTATGTCAACGGTGACAAGTGTGGGAACCAGCGCTTCTCCACCAGGATCACGTTTGAGTGTGCTCAGATATCGGGCTCACCAGCATTTCAGCTTCAGGATGGTTGTGAGTACGTGTTTATCTGGAGAACTGTGGAAGCCTGTCCCGTTGTCAGAGTGGAAGGGGACAACTGTGAGGTGAAAGACCCAAGGCATGGCAACTTGTATGACCTGAAGCCCCTGGGCCTCAACGACACCATCGTGAGCGCTGGCGAATACACTTATTACTTCCGGGTCTGTGGGAAGCTTTCCTCAGACGTCTGCCCCACAAGTGACAAGTCCAAGGTGGTCTCCTCATGTCAGGAAAAGCGGGAACCGCAGGGATTTCACAAAGTGGCAGGTCTCCTGACTCAGAAGCTAACTTATGAAAATGGCTTGTTAAAAATGAACTTCACGGGGGGGGACACTTGCCATAAGGTTTATCAGCGCTCCACAGCCATCTTCTTCTACTGTGACCGCGGCACCCAGCGGCCAGTATTTCTAAAGGAGACTTCAGATTGTTCCTACTTGTTTGAGTGGCGAACGCAGTATGCCTGCCCACCTTTCGATCTGACTGAATGTTCATTCAAAGATGGGGCTGGCAACTCCTTCGACCTCTCGTCCCTGTCAAGGTACAGTGACAACTGGGAAGCCATCACTGGGACGGGGGACCCGGAGCACTACCTCATCAATGTCTGCAAGTCTCTGGCCCCGCAGGCTGGCACTGAGCCGTGCCCTCCAGAAGCAGCCGCGTGTCTGCTGGGTGGCTCCAAGCCCGTGAACCTCGGCAGGGTAAGGGACGGACCTCAGTGGAGAGATGGCATAATTGTCCTGAAATACGTTGATGGCGACTTATGTCCAGATGGGATTCGGAAAAAGTCAACCACCATCCGATTCACCTGCAGCGAGAGCCAAGTGAACTCCAGGCCCATGTTCATCAGCGCCGTGGAGGACTGTGAGTACACCTTTGCCTGGCCCACAGCCACAGCCTGTCCCATGAAGAGCAACGAGCATGATGACTGCCAGGTCACCAACCCAAGCACAGGACACCTGTTTGATCTGAGCTCCTTAAGTGGCAGGGCGGGATTCACAGCTGCTTACAGCGAGAAGGGGTTGGTTTACATGAGCATCTGTGGGGAGAATGAAAACTGCCCTCCTGGCGTGGGGGCCTGCTTTGGACAGACCAGGATTAGCGTGGGCAAGGCCAACAAGAGGCTGAGATACGTGGACCAGGTCCTGCAGCTGGTGTACAAGGATGGGTCCCCTTGTCCCTCCAAATCCGGCCTGAGCTATAAGAGTGTGATCAGTTTCGTGTGCAGGCCTGAGGCCAGGCCAACCAATAGGCCCATGCTCATCTCCCTGGACAAGCAGACATGCACTCTCTTCTTCTCCTGGCACACGCCGCTGGCCTGCGAGCAAGCGACCGAATGTTCCGTGAGGAATGGAAGCTCTATTGTTGACTTGTCTCCCCTTATTCATCGCACTGGTGGTTATGAGGCTTATGATGAGAGTGAGGATGATGCCTCCGATACCAACCCTGATTTCTACATCAATATTTGTCAGCCACTAAATCCCATGCACGGAGTGCCCTGTCCTGCCGGAGCCGCTGTGTGCAAAGTTCCTATTGATGGTCCCCCCATAGATATCGGCCGGGTAGCAGGACCACCAATACTCAATCCAATAGCAAATGAGATTTACTTGAATTTTGAAAGCAGTACTCCTTGCTTAGCGGACAAGCATTTCAACTACACCTCGCTCATCGCGTTTCACTGTAAGAGAGGTGTGAGCATGGGAACGCCTAAGCTGTTAAGGACCAGCGAGTGCGACTTTGTGTTCGAATGGGAGACTCCTGTCGTCTGTCCTGATGAAGTGAGGATGGATGGCTGTACCCTGACAGATGAGCAGCTCCTCTACAGCTTCAACTTGTCCAGCCTTTCCACGAGCACCTTTAAGGTGACTCGCGACTCGCGCACCTACAGCGTTGGGGTGTGCACCTTTGCAGTCGGGCCAGAACAAGGAGGCTGTAAGGACGGAGGAGTCTGTCTGCTCTCAGGCACCAAGGGGGCATCCTTTGGACGGCTGCAATCAATGAAACTGGATTACAGGCACCAGGATGAAGCGGTCGTTTTAAGTTACGTGAATGGTGATCGTTGCCCTCCAGAAACCGATGACGGCGTCCCCTGTGTCTTCCCCTTCATATTCAATGGGAAGAGCTACGAGGAGTGCATCATAGAGAGCAGGGCGAAGCTGTGGTGTAGCACAACTGCGGACTACGACAGAGACCACGAGTGGGGCTTCTGCAGACACTCAAACAGCTACCGGACATCCAGCATCATATTTAAGTGTGATGAAGATGAGGACATTGGGAGGCCACAAGTCTTCAGTGAAGTGCGTGGGTGTGATGTGACATTTGAGTGGAAAACAAAAGTTGTCTGCCCTCCAAAGAAGTTGGAGTGCAAATTCGTCCAGAAACACAAAACCTACGACCTGCGGCTGCTCTCCTCTCTCACCGGGTCCTGGTCCCTCGTCCACAACGGAGTCTCGTACTATATAAATCTGTGCCAGAAAATATATAAAGGGCCCCTGGGCTGCTCTGAAAGGGCCAGCATTTGCAGAAGGACCACAACTGGTGACGTCCAGGTCCTGGGACTCGTTCACACGCAGAAGCTGGGTGTCATAGGTGACAAAGTTGTTGTCACGTACTCCAAAGGTTATCCGTGTGGTGGAAATAAGACCGCATCCTCCGTGATAGAATTGACCTGTACAAAGACGGTGGGCAGACCTGCATTCAAGAGGTTTGATATCGACAGCTGCACTTACTACTTCAGCTGGGACTCCCGGGCTGCCTGCGCCGTGAAGCCTCAGGAGGTGCAGATGGTGAATGGGACCATCACCAACCCTATAAATGGCAAGAGCTTCAGCCTCGGAGATATTTATTTTAAGCTGTTCAGAGCCTCTGGGGACATGAGGACCAATGGGGACAACTACCTGTATGAGATCCAACTTTCCTCCATCACAAGCTCCAGAAACCCGGCGTGCTCTGGAGCCAACATATGCCAGGTGAAGCCCAACGATCAGCACTTCAGTCGGAAAGTTGGAACCTCTGACAAGACCAAGTACTACCTTCAAGACGGCGATCTCGATGTCGTGTTTGCCTCTTCCTCTAAGTGCGGAAAGGATAAGACCAAGTCTGTTTCTTCCACCATCTTCTTCCACTGTGACCCTCTGGTGGAGGACGGGATCCCCGAGTTCAGTCACGAGACTGCCGACTGCCAGTACCTCTTCTCTTGGTACACCTCAGCCGTGTGTCCTCTGGGGGTGGGCTTTGACAGCGAGAATCCCGGGGACGACGGGCAGATGCACAAGGGGCTGTCAGAACGGAGCCAGGCAGTCGGCGCGGTGCTCAGCCTGCTGCTGGTGGCGCTCACCTGCTGCCTGCTGGCCCTGTTGCTCTACAAGAAGGAGAGGAGGGAAACAGTGATAAGTAAGCTGACCACTTGCTGTAGGAGAAGTTCCAACGTGTCCTACAAATACTCAAAGGTGAATAAGGAAGAAGAGACAGATGAGAATGAAACAGAGTGGCTGATGGAAGAGATCCAGCTGCCTCCTCCACGGCAGGGAAAGGAAGGGCAGGAGAACGGCCATATTACCACCAAGTCAGTGAAAGCCCTCAGCTCCCTGCATGGGGATGACCAGGACAGTGAGGATGAGGTTCTGACCATCCCAGAGGTGAAAGTTCACTCGGGCAGGGGAGCTGGGGCAGAGAGCTCCCACCCAGTGAGAAACGCACAGAGCAATGCCCTTCAGGAGCGTGAGGACGATAGGGTGGGGCTGGTCAGGGGTGAGAAGGCGAGGAAAGGGAAGTCCAGCTCTGCACAGCAGAAGACAGTGAGCTCCACCAAGCTGGTGTCCTTCCATGACGACAGCGACGAGGACCTCTTACACATCTGA MAELGAGGDGHRGGDGAVRSETVIHGKLLIPKIMYFIKSTSVEVWILSSAGHQVLFVCTT*RHALIIQWVTLF*EVQPDLSWNSTQQ*AVTSKAQITESRAALPSCVGKPWELLNL*LQQNVCTTLSGGPLQPARKTYLKQIRRCHAMCLMKS*GSMISIL*SSLVVPTWWMTPIRTLLYSSMFVET*THYETQVHSCGPVPPALPPAW*EDTRRLMLASPGTD*SWCARTGLS*VT*GKRQES*TFVMVTALR*LLHLFARRSGERAPFPNSQLNPTAAMKLSGLLSMPATEITWKVKLVL*AASSRMSP*TSHHLPRAEVHPIFQMEKNICFI*MSVEKLKYSSVIKNKLQFAK*KRAIPLKSKQQEDTTIRPSDIRMETSP*YILEVMNAAQGFSG*AS*TLSAIKPQVTMGKELLYSQGRLTAPTSSHGTRNTPVLRRRKTSSAVPPTGRSAMTCPRWSAMQNQSRIGKLWMAVRRKQRRSIFSLIFVTECCRKARHEGVPRTRQCVQWIKMEVKIWENLFPLP*KRKETFNSLIQMVMIVVMARKLKLISHLYASQVIWKVHQC*ELLGKAVAFMSLSGTQLRPVCCLRQKGRTARSLTPRQGFLLTYHLSQRKMVPIKLRQRSMTFI*MCVARCL*APVSQTQEPARWQKVMRRLGTWV*VMRSFHIMMG*SN*TTEAAHPITMKDTHRELRSSPFSVIETREWASLNIRKRITPPTTSGGTPAMPARRSPWNA**PTPPRWSSTTSPVWQNLKVALEETGMPWTTQGNMSRGGNTTLTCVGL*IQCRAATDMHRLAR*SMKKIRAPSLKWFPSVTWEWQRPARWLRTAAASFWNT*MGRPAPPAMADRPHIPRGSISSAPGAG*TATPSFLSTGSVWSVSCGTQRLPVPFRQRRIQTRLAL*GIPTVDLCLILIR*TVRKDITSLALGRFLCLMSAAQCLSVGPSWENLLLAVRQKPKLKSSRIGSQQGQSELRKASSCPQRASSL*PTKGLSLPKVPLMLLSSALFAMMMFTQGPSNSCIKISTLGKGSETLTLSLKPRWPVFLLQWTAKSPTWLEMSTT*LA*AQSGNLGRLLTPLSMGERGLSI*AFAILSLTFLDARAAQWGLA*CQKAIAGIWVWCR*VPKPRRMDL*ASCMSTVTSVGTSASPPGSRLSVLRYRAHQHFSFRMVVSTCLSGELWKPVPLSEWKGTTVR*KTQGMATCMT*SPWASTTPS*ALANTLITSGSVGSFPQTSAPQVTSPRWSPHVRKSGNRRDFTKWQVS*LRS*LMKMAC*K*TSRGGTLAIRFISAPQPSSSTVTAAPSGQYF*RRLQIVPTCLSGERSMPAHLSI*LNVHSKMGLATPSTSRPCQGTVTTGKPSLGRGTRSTTSSMSASLWPRRLALSRALQKQPRVCWVAPSP*TSAG*GTDLSGEMA*LS*NTLMATYVQMGFGKSQPPSDSPAARAK*TPGPCSSAPWRTVSTPLPGPQPQPVP*RATSMMTARSPTQAQDTCLI*AP*VAGRDSQLLTARRGWFT*ASVGRMKTALLAWGPALDRPGLAWARPTRG*DTWTRSCSWCTRMGPLVPPNPA*AIRV*SVSCAGLRPGQPIGPCSSPWTSRHALSSSPGTRRWPASKRPNVP*GMEALLLTCLPLFIALVVMRLMMRVRMMPPIPTLISTSIFVSH*IPCTECPVLPEPLCAKFLLMVPP*ISAG*QDHQYSIQ*QMRFT*ILKAVLLA*RTSISTTPRSSRFTVREV*AWERLSC*GPASATLCSNGRLLSSVLMK*GWMAVP*QMSSSSTASTCPAFPRAPLR*LATRAPTALGCAPLQSGQNKEAVRTEESVCSQAPRGHPLDGCNQ*NWITGTRMKRSF*VT*MVIVALQKPMTASPVSSPSYSMGRATRSAS*RAGRSCGVAQLRTTTETTSGASADTQTATGHPASYLSVMKMRTLGGHKSSVKCVGVM*HLSGKQKLSALQRSWSANSSRNTKPTTCGCSPLSPGPGPSSTTESRTI*ICARKYIKGPWAALKGPAFAEGPQLVTSRSWDSFTRRSWVS*VTKLLSRTPKVIRVVEIRPHPP**N*PVQRRWADLHSRGLISTAALTTSAGTPGLPAP*SLRRCRW*MGPSPTL*MARASASEIFILSCSEPLGT*GPMGTTTCMRSNFPPSQAPETRRALEPTYAR*SPTISTSVGKLEPLTRPSTTFKTAISMSCLPLPLSAERIRPSLFLPPSSSTVTLWWRTGSPSSVTRLPTASTSSLGTPQPCVLWGWALTARIPGTTGRCTRGCQNGARQSARCSACCWWRSPAACWPCCSTRRRGGKQ**VS*PLAVGEVPTCPTNTQR*IRKKRQMRMKQSG*WKRSSCLLHGRERKGRRTAILPPSQ*KPSAPCMGMTRTVRMRF*PSQR*KFTRAGELGQRAPTQ*ETHRAMPFRSVRTIGWGWSGVRRRGKGSPALHSRRQ*APPSWCPSMTTATRTSYTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32257 APP::ENSG00000270533 ENSG00000142192.22::ENSG00000270533.2 NCIH1666 SRR8615989 SRR8652140 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA APP ENSG00000142192.22 protein_coding - - chr21:25880535-26171128:- chr21:25954590:- chr21:27252846-27543446:- chr21:27326904:- ENSG00000270533 ENSG00000270533.2 transcribed_processed_pseudogene - - chr21:9975017-10119309:- chr21:9998048:- chr21:10453045-10597337:- chr21:10476076:- chr21:25947783,chr21:25947766,chr21:25947791 chr21:9999568,chr21:9999572,chr21:9999572 NA NA chr21:27320098,chr21:27320081,chr21:27320106 chr21:10477596,chr21:10477600,chr21:10477600 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 1 21 1 21 ONLY_REF_SPLICE NO_LDAS 0.2747 GT 1.8256 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32261 AGAP3::TTC26 ENSG00000133612.20::ENSG00000105948.13 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1887 FALSE NA FALSE NA AGAP3 ENSG00000133612.20 protein_coding + + chr7:151085831-151144436:+ chr7:151123886:+ chr7:150782918-150841523:+ chr7:150820973:+ TTC26 ENSG00000105948.13 protein_coding + + chr7:139133744-139191986:+ chr7:139165132:+ chr7:138818490-138876732:+ chr7:138849878:+ chr7:151127085,chr7:151127084 chr7:139162342,chr7:139162338 NA NA chr7:150824172,chr7:150824171 chr7:138847088,chr7:138847084 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Imm30|86-121|0.00035^Ras|129-285|5.3e-20^Roc|129-167|1.1e-05^TniB|130-155|0.043^TniB|219-241|0.0058^Ank_3|304-319|9.4^PH|405-465|1.1e-07^PH_4|407-440|0.53^PH_11|415-439|0.091^PH_4|579-639|0.0012^PH|594-640|4.5e-07^PH_6|603-638|1.5e-05^PH_11|603-638|0.011^ArfGap|665-775|3e-39^Ank_4|789-842|1.5e-07^Ank_2|790-879|2.3e-12^Ank|792-809|6.4^Ank_5|817-862|2.8e-06^Ank|821-852|1.8e-05^Ank_3|821-848|0.047^Ank|855-879|5.5e-05^Ank_3|855-879|0.076^Ank_4|856-878|0.011 RPAP1_C-PARTIAL|~400-414|0.00055 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:11.89Mb] 34 13 34 13 ONLY_REF_SPLICE YES_LDAS 0.4862 GT 1.8323 AG 1.8323 ENST00000397238.7 1-1221 ENST00000495038.5 400-1272 chr7|+|[0]151086742-151087072[0]|[1]151116793-151116851[2]|[0]151117095-151117182[0]|[1]151117371-151117456[2]|[0]151117636-151117777[0]|[1]151118210-151118344[0]|[1]151118505-151118632[2]|[0]151119987-151120145[2]|[0]151123794-151123886[2]<==>chr7|+|[0]139165132-139165234[0]|[1]139166840-139166895[2]|[0]139168344-139168397[2]|[0]139169289-139169352[0]|[1]139178214-139178302[2]|[0]139178515-139178598[2]|[0]139179574-139179643[0]|[1]139181092-139181198[2]|[0]139187406-139187539[1]|[2]139189321-139189432[2] atgaacttccaggcgggcggggggcagagcccgcagcagcagcagagcctggcggctccggggggcggcggcgctgccgcgcagcagctcgtctgcggcgggcagttcggcggcgcggggcccggggccgggggcggcggcggcccctcgcagcagctggccggcgggcccccccagcagttcgcgctctccaactccgcggccatccgggccgagatccagcgcttcgagtccgtgcatcccaatatctacgccatctacgacctgatcgagcgcatcgaggatttggcgctgcagaaccagatccgggagcacgtcatctccatcgaggactcgtttgtgaacagccaggagtggacgctgagccgctccgtaccggagcttaaagtgggcatagtggggaacctgtctagcgggaagtcagccctggtgcaccgctatctgacggggacctatgtccaggaggagtcccctgaaggggggcggtttaagaaggagattgtggtggatggccagagttacctgctgctgatccgagatgaaggaggcccccctgagctccagtttgctgcctgggtggatgcagtggtgtttgtgttcagcctggaggatgaaatcagtttccagacggtgtacaactacttcctgcgtctctgcagcttccgcaacgccagcgaggtgcccatggtgcttgtgggcacgcaggatgccatcagcgctgcgaatccccgggttatcgacgacagcagagcccgcaagctctccacagatctgaagcggtgcacctactatgagacgtgcgcgacctacgggctcaatgtggagcgtgtcttccaggacgtggcccagaaggtagtggccttgcgaaagaagcagcaactggccatcgggccctgcaagtcactgcccaactcgcccagccactcggccgtgtccgccgcctccatcccggccgtgcacatcaaccaggccacgaatggcggcggcagcgccttcagcgactactcgtcctcagtcccctccacccccagcatcagccagcgggagctgcgcatcgagaccatcgctgcctcctccacccccacacccatccgaaagcagtccaagcggcgctccaacatcttcacgtctcggaagggtgctgacctggaccgggagaagaaggctgccgagtgcaaggtggacagcatcgggagcggccgcgccatccccatcaagcagGTTGTTTTCCGAGGAGGTGAAGGGGCTTTGCAGGTTTTACCTCCCCTAGTTGATGTCATTCCTGAAGCTAGGCTAAACTTGGTGATTTACTACCTTCGTCAAGATGATGTACAAGAAGCTTATAACTTAATTAAGGATCTGGAACCTACTACTCCTCAGGAGTATATTCTCAAAGGAGTGGTCAATGCAGCCCTTGGCCAGGAAATGGGTTCAAGGGATCATATGAAAATTGCCCAGCAGTTCTTCCAGTTGGTGGGAGGATCAGCTAGTGAATGTGATACAATACCAGGGAGGCAGTGCATGGCTTCCTGTTTCTTCCTGCTTAAGCAATTTGATGATGTTTTGATTTACCTCAACTCATTTAAGAGTTACTTCTATAATGATGACATCTTTAACTTTAATTATGCCCAAGCCAAAGCTGCAACAGGCAATACCAGTGAGGGCGAAGAGGCGTTCCTCTTGATCCAAAGTGAGAAGATGAAAAATGATTACATTTACCTCAGCTGGTTAGCTCGGTGCTATATTATGAATAAGAAACCAAGACTAGCCTGGGAACTTTATCTTAAGATGGAAACCTCCGGCGAGTCCTTCAGTCTCTTACAGCTCATTGCTAATGACTGCTACAAGATGGGCCAGTTTTACTATTCTGCCAAAGCTTTTGATGTCCTTGAGAGGCTGGATCCTAACCCTGAATATTGGGAAGGCAAACGGGGTGCCTGTGTGGGCATTTTCCAGATGATCATAGCTGGGAGAGAACCCAAAGAGACCCTTCGAGAAGTGCTCCATTTACTGAGAAGCACAGGTAACACCCAAGTAGAATACATGATCCGGATCATGAAGAAATGGGCCAAAGAAAACAGAGTGTCCATCTAA MNFQAGGGQSPQQQQSLAAPGGGGAAAQQLVCGGQFGGAGPGAGGGGGPSQQLAGGPPQQFALSNSAAIRAEIQRFESVHPNIYAIYDLIERIEDLALQNQIREHVISIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKKQQLAIGPCKSLPNSPSHSAVSAASIPAVHINQATNGGGSAFSDYSSSVPSTPSISQRELRIETIAASSTPTPIRKQSKRRSNIFTSRKGADLDREKKAAECKVDSIGSGRAIPIKQVVFRGGEGALQVLPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMGSRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYNDDIFNFNYAQAKAATGNTSEGEEAFLLIQSEKMKNDYIYLSWLARCYIMNKKPRLAWELYLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGIFQMIIAGREPKETLREVLHLLRSTGNTQVEYMIRIMKKWAKENRVSI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32262 CPEB2::CC2D2A ENSG00000137449.17::ENSG00000048342.18 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1886 FALSE NA FALSE NA CPEB2 ENSG00000137449.17 protein_coding + + chr4:15002481-15070153:+ chr4:15017278:+ chr4:15004105-15071777:+ chr4:15018902:+ CC2D2A ENSG00000048342.18 protein_coding + + chr4:15469865-15601552:+ chr4:15553158:+ chr4:15471489-15603175:+ chr4:15554781:+ chr4:15025809,chr4:15025838,chr4:15025837 chr4:15552467,chr4:15552467,chr4:15552463 NA NA chr4:15027433,chr4:15027462,chr4:15027461 chr4:15554090,chr4:15554090,chr4:15554086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CEBP_ZZ|18-26|1.7^CEBP_ZZ|547-558|1.6^RRM_7|776-865|8.9e-42^RRM_1|779-840|2.4e-10^RRM_7|886-905|0.067^RRM_1|887-945|2.3e-06^CEBP_ZZ|958-1020|1.1e-23^zf-B_box|970-1008|0.00046 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.40Mb] 34 22 34 22 ONLY_REF_SPLICE YES_LDAS 0.5793 GT 1.9656 AG 1.9086 ENST00000538197.7 1-2125 ENST00000389652.11 2339-4899 chr4|+|[0]15002674-15004335[2]|[0]15007305-15007586[2]|[0]15008338-15008427[2]|[0]15017188-15017278[0]<==>chr4|+|[1]15553158-15553305[1]|[2]15555072-15555210[2]|[0]15557304-15557507[2]|[0]15559165-15559257[2]|[0]15560531-15560622[1]|[2]15561588-15561602[1]|[2]15563355-15563522[1]|[2]15567377-15567482[2]|[0]15567677-15567786[1]|[2]15569293-15569389[2]|[0]15570398-15570496[2]|[0]15574150-15574326[2]|[0]15576604-15576624[2]|[0]15579968-15580171[2]|[0]15586157-15586246[2]|[0]15587816-15587929[2]|[0]15589545-15589679[2]|[0]15596085-15596207[2]|[0]15597407-15597465[1]|[2]15599529-15599706[2]|[0]15601237-15601425[2] atgagggatttcgggtttggggtgctgcagaccgccccgctccgaagtagcagtcctgggcccctgttctgcggcgaggcgtatggtccttacgccgtggggtccgtcaacccgctgccctccgccacgcccttcggcccactgtcgccaccaccgttgcctgtcaccggcttcttagaggccgcctcccccttctccgtccccctcggcggcggcgcgggcagcccggccgccgccgcttcctcttcctccccgttcctggcgcatcagcagaccatgcaggatgagctgcttctggggctgacacagcagccggcgcggccgctttcgggggcggcggccacggagaaactccccgaccaccaccccggcggcggcacgatcgcgggtgtgacccacctcctcccctcccaggacttcaaaccgagtctgcaccacccctcctcctcctccgcctcctcctgctgctgctgccgcacctcctccccgcaggacttcagtaagcggcagcagcagcagctgagcagccagaagaggaaagagttcagccctccccaccttccccaccctccggactcgaagccgccgccgccgcctccgccgctccactgccccggtcggttcagcccgccgccgccgccagccggcccgctcctccagccggcgcagctcgctcagcgccagcagcaacagccgccgcagcagttcagcctcctgcatcagcagcacctctcgccgcaggacttcgccccgcggcagcgtccggcagacctgcccccgctcccgcagctccctccctcgccgcctgcagccccgcggcgccgccacggaggcgcgggcagccctcgcaagaccccagccgcgggcgagggcagcgccgccgagtcccccaatgcgggcttggcctcctcgacgccggtgaaccccgcgccgggctccatggagtcccccaaccaccctctgctcaacagtcccagtaacctcctgcccggaggtgcgcttggcgcgggcgccttcagcagcctgcagagcccggaccttccacacccgggcggcggcggcggcggcgggggcggggggcccccaggaggcggagggggaggcggctccgcgtcgccgccgccgctgcccggcttcggcaccccctggtcggtgcagaccgcgtcgccgccaccccagccccagcagccgccgccgacccagccgcagcagcagccgccgccaccccagcagccgccccagccgcagccgcagccgcccggctcgtctgccaccaccccgggcggcggcagcggcggctcgctcagcgccatgccgccgcccagccccgactcagagaacggcttctaccccgggctgccgtcgtccatgaacccggccttcttccctagcttctcgcccgtgtcgccgcacggctgcactgggctcagcgttccgacgagcggcggcggcggcggcggcttcggcggccccttctcggctaccgctgtgccccctccgccgccgcccgccatgaatatacctcaacagcagcccccgccgcccgcggcgccgcagcagccgcagagccggaggtcgcccgtcagcccgcagctccagcagcagcaccaggcggcggccgccgccttcctgcagcagaggaactcctataaccaccaccagcctcttctgaaacagtctccctggagcaaccatcagagcagtggctggggcactggaagtatgtcctggggagcaatgcatggcagagatcatcgtagaaccggaaacatgggaatcccaggaactatgaatcagatatctccattgaagaaaccgttttctggtaatgtcatagcaccaccgaaatttactcgctcaactccatcactgactccaaaatcttggattgaagataatgtgttcagaacagacaacaatagtaatacactcttacccttacaggtgagatctagtttgcagttgccagcttggggctcagattcactccaagatagttggtgcactgcagccggaacatccagaatagaccaggatcgaagtagaatgtatgacagtttgaatatgcactctttggaaaattcccttatcgatattatgagagcagagcatgatcctcttaaggGAGTGCCCTTCTCATTTGAAGCTGATGGCAGTAACCAGCTGACTCTGATGACCTCAGGGAAAGTGTCTCATAGTGTGGCATGGGCCATTGGAGAAAACGGGATACCTTTAATTCCTCCATTGTCACAGCAGAACATCGGATTTCGGAGTGCTTTGAAGAAAGCAGATGCCATCTCATCTATTGGCACATCAGGACTGACAGACATGAAAAAATTGGCCAAGTGGGCAGCAGAGTCCAAGCTCGACCCAAATGACCCCAACAATGCCCCTTTGATGCAGCTTATCTCGGTTGCTACCAGTGGTGAATCCTATGTCCCTGATTTCTTTAGACTGGAGCAGCTGCAACAGGAGTTTAACTTTGTTTCAGATCAAGAATTAAATAGATCCAAACGATTTAGGCTTCTTCATCTTAGAAGCCAAGAGGTGCCAGAATTCCGAAATTATAAGCAAGTTCCAGTCTATGACCGAGAAATTATGGAAAAGGTATTCCAGGACTATGAGAAACGGTTACGAGACAGAAATGTAATAGAAACCAAGGAACACATAGACACCCATAGGGCCATAGTAGCCAAGTACCTCCAGCAGGTTAGAGAATCAGTGATAAATCGTTTCTTAATTGCAAAACAATATTTTCTTCTTGCTGATATGATAGTAGAAGAAGAAGTTCCCAATATCAGTTCTGAAGGCTCAGGCATTTTGGGCCTAAGCCTTTTCAAGCTGGCAGAACAAAAGCGACCACTGCGGCCAAGGAGAAAAGGTCGGAAGAAGGTGACAGCCCAAAACCTGTCTGATGGAGACATAAAGCTGCTGGTGAACATTGTGCGAGCTTACGACATTCCAGTGAGGAAGCCGGCAGTGAGCAAATTCCAGCAGCCGTCGAGGTCTTCAAGGATGTTCAGTGAAAAGCATGCTGCTTCCCCAAGCACGTACAGCCCAACCCACAATGCTGACTACCCCCTCGGCCAGGTTTTAGTACGTCCCTTTGTAGAAGTCTCTTTTCAACGAACAGTTTGCCATACGACTACGGCTGAAGGACCAAACCCTAGCTGGAATGAAGAACTAGAACTTCCATTTAGGGCTCCTAATGGAGATTATAGCACAGCCAGTCTGCAGTCAGTGAAAGATGTTGTGTTCATTAACATTTTTGATGAAGTACTGCATGATGTCTTAGAGGATGACCGTGAAAGAGGAAGTGGAATCCATACTCGTATTGAGAGACACTGGCTGGGATGTGTGAAAATGCCATTTAGCACAATATATTTCCAAGCAAGGATTGATGGAACATTTAAAATAGATATTCCCCCAGTTCTTCTGGGCTACAGTAAGGAGCGAAATATGATTCTTGAGCGGGGTTTTGATTCTGTCCGAAGCTTAAGTGAAGGCTCCTACATTACCCTCTTTATTACCATTGAGCCCCAGCTGGTTCCTGGAGAGTCCATTCGAGAAAAGATGAGTAACATGCTTAAGAAGTTTGAGTCTCAGGAAGATGAGAAATTACTTCAAGCAACTGAGAAGTTTCAAGCTGAATGTGCCTTAAAGTTTCCAAATCGTCAGTGCCTTACAACAGTAATTGATATAAGCGGAAAAACTGTTTTTATCACACGTTATCTCAAACCTTTAAACCCTCCTCAGGAGCTCCTTAATGTCTACCCCAATAATCTACAGGCAACTGCAGAACTGGTGGCTCGATATGTGTCCTTGATTCCCTTCTTGCCTGACACTGTCTCATTTGGTGGTATCTGTGACCTCTGGAGCACATCTGATCAATTTCTTGATCTCCTGGCAGGGGATGAAGAAGAACATGCAGTACTATTGTGTAATTACTTTCTGTCTCTGGGTAAGAAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGGTCCAACTGCCTATGTGCTAACTTGGGAGCAAGGTCGTTATTTAATATGGAATCCCTGCAGTGGACATTTTTATGGACAATTTGATACATTCTGTCCCTTGAAAAATGTGGGCTGTTTAATAGGTCCTGACAATATTTGGTTTAATATTCAACGATATGAATCTCCACTAAGGATAAATTTTGATGTCACCAGGCCCAAGCTATGGAAATCTTTCTTTTCAAGAAGCCTTCCATATCCTGGCCTTTCCAGTGTTCAGCCTGAAGAGCTAATTTACCAGCGCTCAGACAAAGCAGCTGCAGCTGAGCTACAAGACAGGATTGAAAAAATACTAAAAGAAAAAATCATGGACTGGAGGCCACGCCATCTGACTCGGTGGAATAGGTATTGTACCTCTACTCTGCGTCACTTCTTGCCTCTGTTAGAAAAAAGTCAAGGAGAAGATGTAGAAGATGACCACAGAGCAGAACTGCTAAAACAGCTGGGAGACTACAGGTTCTCTGGATTTCCTCTTCACATGCCTTATTCTGAAGTGAAGCCTTTAATTGACGCTGTGTATAGTACTGGAGTACATAATATTGATGTTCCTAATGTTGAATTTGCTTTAGCTGTATACATACACCCATACCCCAAAAATGTTTTGTCTGTTTGGATCTATGTTGCCTCTCTTATACGCAACAGGTAA MRDFGFGVLQTAPLRSSSPGPLFCGEAYGPYAVGSVNPLPSATPFGPLSPPPLPVTGFLEAASPFSVPLGGGAGSPAAAASSSSPFLAHQQTMQDELLLGLTQQPARPLSGAAATEKLPDHHPGGGTIAGVTHLLPSQDFKPSLHHPSSSSASSCCCCRTSSPQDFSKRQQQQLSSQKRKEFSPPHLPHPPDSKPPPPPPPLHCPGRFSPPPPPAGPLLQPAQLAQRQQQQPPQQFSLLHQQHLSPQDFAPRQRPADLPPLPQLPPSPPAAPRRRHGGAGSPRKTPAAGEGSAAESPNAGLASSTPVNPAPGSMESPNHPLLNSPSNLLPGGALGAGAFSSLQSPDLPHPGGGGGGGGGGPPGGGGGGGSASPPPLPGFGTPWSVQTASPPPQPQQPPPTQPQQQPPPPQQPPQPQPQPPGSSATTPGGGSGGSLSAMPPPSPDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQRNSYNHHQPLLKQSPWSNHQSSGWGTGSMSWGAMHGRDHRRTGNMGIPGTMNQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRSSLQLPAWGSDSLQDSWCTAAGTSRIDQDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGVPFSFEADGSNQLTLMTSGKVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSIGTSGLTDMKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELNRSKRFRLLHLRSQEVPEFRNYKQVPVYDREIMEKVFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESVINRFLIAKQYFLLADMIVEEEVPNISSEGSGILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIKLLVNIVRAYDIPVRKPAVSKFQQPSRSSRMFSEKHAASPSTYSPTHNADYPLGQVLVRPFVEVSFQRTVCHTTTAEGPNPSWNEELELPFRAPNGDYSTASLQSVKDVVFINIFDEVLHDVLEDDRERGSGIHTRIERHWLGCVKMPFSTIYFQARIDGTFKIDIPPVLLGYSKERNMILERGFDSVRSLSEGSYITLFITIEPQLVPGESIREKMSNMLKKFESQEDEKLLQATEKFQAECALKFPNRQCLTTVIDISGKTVFITRYLKPLNPPQELLNVYPNNLQATAELVARYVSLIPFLPDTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLLMGNAIPEGPTAYVLTWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCLIGPDNIWFNIQRYESPLRINFDVTRPKLWKSFFSRSLPYPGLSSVQPEELIYQRSDKAAAAELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLEKSQGEDVEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIDAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVWIYVASLIRNR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32268 GTF2I::GTF2IRD1 ENSG00000263001.8::ENSG00000006704.11 NCIH1693 SRR8615990 SRR8652046 LUNG carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 1890 FALSE NA FALSE NA GTF2I ENSG00000263001.8 protein_coding + + chr7:74650231-74760692:+ chr7:74658068:+ chr7:74064571-74175022:+ chr7:74072394:+ GTF2IRD1 ENSG00000006704.11 protein_coding + + chr7:74453790-74602605:+ chr7:74529734:+ chr7:73868120-74016931:+ chr7:73944064:+ chr7:74662377,chr7:74662375 chr7:74524792,chr7:74524787 NA NA chr7:74076706,chr7:74076704 chr7:73939122,chr7:73939117 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.06Mb];LOCAL_REARRANGEMENT:+:[55063] 17 0 17 0 ONLY_REF_SPLICE YES_LDAS 0.1758 GT 1.5628 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-10525 chr7:74595968-74596026:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Liver,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE General transcription factor IIi 2 thymoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 32290 RASSF8::TSPAN9 ENSG00000123094.16::ENSG00000011105.14 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1895 FALSE NA FALSE NA RASSF8 ENSG00000123094.16 protein_coding + + chr12:25958232-26079892:+ chr12:25959148:+ chr12:26111165-26232825:+ chr12:26112081:+ TSPAN9 ENSG00000011105.14 protein_coding + + chr12:3077355-3286564:+ chr12:3278421:+ chr12:3186521-3395730:+ chr12:3387587:+ chr12:25961524,chr12:25961521,chr12:25961524,chr12:25961500,chr12:25961518,chr12:25961522 chr12:3261658,chr12:3261658,chr12:3261663,chr12:3261651,chr12:3261649,chr12:3261682 NA NA chr12:26114457,chr12:26114454,chr12:26114457,chr12:26114433,chr12:26114451,chr12:26114455 chr12:3370824,chr12:3370824,chr12:3370829,chr12:3370817,chr12:3370815,chr12:3370848 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:22.67Mb] 93 6 93 6 ONLY_REF_SPLICE YES_LDAS 1.2226 GT 1.9656 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32291 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52245632:+ chr12:52626304-52645970:+ chr12:52639416:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.14Mb] 76 107 75.78 52.49 ONLY_REF_SPLICE YES_LDAS 1.5841 GT 1.371 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32292 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52248211:+ chr12:52626304-52645970:+ chr12:52641995:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.14Mb] 70 115 70 62.03 ONLY_REF_SPLICE YES_LDAS 1.6306 GT 1.9899 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32296 GALNT8::PRMT8 ENSG00000130035.9::ENSG00000111218.12 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1896 FALSE NA FALSE NA GALNT8 ENSG00000130035.9 protein_coding + + chr12:4720400-4851927:+ chr12:4765546:+ chr12:4829566-4961093:+ chr12:4874712:+ PRMT8 ENSG00000111218.12 protein_coding + + chr12:3381349-3593973:+ chr12:3553651:+ chr12:3490515-3703139:+ chr12:3662817:+ chr12:4785425,chr12:4785409,chr12:4785381,chr12:4785421 chr12:3552056,chr12:3552036,chr12:3552036,chr12:3552049 NA NA chr12:4894591,chr12:4894575,chr12:4894547,chr12:4894587 chr12:3661222,chr12:3661202,chr12:3661202,chr12:3661215 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sec3_CC|42-104|3.3e-05^FlaC_arch|59-100|0.00072^PRP9_N|70-140|0.0004^Metal_resist|76-106|0.026^Talin_R4|79-139|3.1e-05^Glyco_tranf_2_2|115-147|0.43^Metal_resist|121-147|0.017^Glyco_transf_7C|124-138|3.7^Glycos_transf_2|184-327|1.1e-28^PRP9_N|192-227|0.26^Glyco_tranf_2_2|215-398|3.2e-05^Glyco_transf_7C|359-411|2.7e-06^Ricin_B_lectin|497-620|5.7e-14^FlaC_arch|616-630|7.2 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.13Mb] 35 29 35 29 ONLY_REF_SPLICE YES_LDAS 0.7903 GT 1.9329 AG 1.9899 ENST00000252318.7 1-1761 ENST00000382622.4 418-1185 chr12|+|[0]4720678-4720888[0]|[1]4726532-4726829[1]|[2]4739163-4739329[0]|[1]4744517-4744700[1]|[2]4745429-4745626[1]|[2]4746144-4746258[2]|[0]4760958-4761143[2]|[0]4763253-4763390[2]|[0]4763952-4764047[2]|[0]4765379-4765546[2]<==>chr12|+|[0]3553651-3553714[0]|[1]3568706-3568848[2]|[0]3569477-3569564[0]|[1]3576871-3576986[2]|[0]3583058-3583208[0]|[1]3592231-3592352[2]|[0]3593099-3593182[2] atgatgttttggaggaaactccccaaagccctcttcattgggctgactctggccattgctgtcaatctccttctggtattttctagcaaggggactttacaaaacctgtttacgggtggtctccacagggagcttcctttacatctgaataaacgctacggggcagtgataaagagactctcccacttggaggtggaattgcaggatctgaaagaaagtatgaaattagctctgaggcaacaagaaaatgtgaacagcacactgaagagggcgaaagatgaagtacgccctcttctaaaggcaatggaaaccaaggtgaatgagacaaagaagcacaaaacccaaatgaaactcttcccacactcacagcttttcaggcaatggggcgaggatctttctgaggcccagcagaaggcggcccaggacctcttccggaagtttggttacaacgcgtacctcagcaaccagctgcctctcaatcgcaccatccccgacacgcgagactacagatgtcttcggaagacatatccttcccaactcccatccctcagtgtcattctcatattcgtgaatgaagctctgtccattatacaacgggccatcaccagtatcatcaaccggacgccctctcgattgttgaaggaaatcatcttggtggatgatttcagctcaaatggagaactaaaggtacacttggatgagaagattaagctttacaaccagaagtatccaggactactgaaaataatacggcatcctgaaaggaaaggtcttgctcaagcccgcaacactggctgggaagctgccacagcagacgtggtcgccatcttggatgctcacattgaagtcaatgttgggtgggcagagccaatcttggctcggattcaggaggaccgcactgtgattgtgtctcctgtgtttgacaacattcgttttgacaccttcaaactggataagtatgaactggcagttgatgggtttaactgggaactctggtgccgctacgatgcactgccacaagcctggattgatctgcatgatgtcactgccccagtgaagagtccttcaatcatgggcatcctggctgctaacaggcacttcctgggagagatcgggtctctggatggtggaatgctcatctatggaggagagaacgtggagcttagcctgagggtgtggcagtgtggagggaaggtcgagattttgccctgttcccggattgcccacctagagagacaccacaagccctacgccttggatctcaccgctgccttgaagcgcaatgctctgcgagtggccgaaatctggatggatgagcacaaacacatggtctacttggcctggaacatacctctccagaactctggaatagattttggagacgtttcttccagaatggcactccgggaaaaactgaaatgtaaaacttttgactggtacctgaaaaatgtttatccactcttgaagccactccacaccatcgtgggctatggaagaatgaaaaacctattggatgaaaatgtctgcttggatcagggacccgttccaggcaacacccccatcatgtattactgccatgaattcagctcacagaatgtctactatcacctaactggggagctctatgtgggacaactgattgcagaggccagtgctagtgatcgctgcctgacagaccctggcaaggcggagaagcccaccttagaaccatgctccaaggcagctaagaatagactgcatatatattgggattttaaaccgATCGAATGCTCCAGTATTTCTGACTACTCAGAGAAGATCATTAAGGCCAACCACTTGGACAACATCATCACCATATTTAAGGGTAAAGTGGAAGAGGTGGAGCTGCCTGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGTCTGTTCTATGAGTCCATGCTCAACACGGTGATCTTTGCCAGGGACAAGTGGCTGAAACCTGGAGGGCTTATGTTTCCAGACCGGGCAGCTTTGTACGTGGTAGCGATTGAAGACAGACAGTACAAGGACTTCAAAATCCACTGGTGGGAGAATGTCTATGGCTTTGACATGACCTGCATCCGGGACGTGGCCATGAAGGAGCCTCTAGTGGACATCGTGGATCCAAAGCAAGTGGTGACCAATGCCTGTTTGATAAAGGAGGTGGACATTTACACAGTGAAGACGGAAGAGCTATCGTTCACATCTGCATTCTGCCTGCAGATACAGCGCAACGACTACGTCCACGCCCTGGTCACCTATTTTAATATTGAATTTACCAAGTGCCACAAGAAAATGGGGTTTTCCACAGCCCCTGATGCTCCCTACACCCACTGGAAGCAGACCGTCTTCTACTTGGAAGATTACCTCACTGTCCGGAGGGGGGAGGAAATCTACGGGACCATATCCATGAAGCCAAATGCCAAAAATGTGCGAGACCTCGATTTCACAGTAGACTTGGATTTTAAGGGACAGCTGTGTGAAACATCTGTATCTAATGACTACAAAATGCGTTAG MMFWRKLPKALFIGLTLAIAVNLLLVFSSKGTLQNLFTGGLHRELPLHLNKRYGAVIKRLSHLEVELQDLKESMKLALRQQENVNSTLKRAKDEVRPLLKAMETKVNETKKHKTQMKLFPHSQLFRQWGEDLSEAQQKAAQDLFRKFGYNAYLSNQLPLNRTIPDTRDYRCLRKTYPSQLPSLSVILIFVNEALSIIQRAITSIINRTPSRLLKEIILVDDFSSNGELKVHLDEKIKLYNQKYPGLLKIIRHPERKGLAQARNTGWEAATADVVAILDAHIEVNVGWAEPILARIQEDRTVIVSPVFDNIRFDTFKLDKYELAVDGFNWELWCRYDALPQAWIDLHDVTAPVKSPSIMGILAANRHFLGEIGSLDGGMLIYGGENVELSLRVWQCGGKVEILPCSRIAHLERHHKPYALDLTAALKRNALRVAEIWMDEHKHMVYLAWNIPLQNSGIDFGDVSSRMALREKLKCKTFDWYLKNVYPLLKPLHTIVGYGRMKNLLDENVCLDQGPVPGNTPIMYYCHEFSSQNVYYHLTGELYVGQLIAEASASDRCLTDPGKAEKPTLEPCSKAAKNRLHIYWDFKPIECSSISDYSEKIIKANHLDNIITIFKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVIFARDKWLKPGGLMFPDRAALYVVAIEDRQYKDFKIHWWENVYGFDMTCIRDVAMKEPLVDIVDPKQVVTNACLIKEVDIYTVKTEELSFTSAFCLQIQRNDYVHALVTYFNIEFTKCHKKMGFSTAPDAPYTHWKQTVFYLEDYLTVRRGEEIYGTISMKPNAKNVRDLDFTVDLDFKGQLCETSVSNDYKMR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32302 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1901 TRUE 3491 TRUE 1325 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245646280:+ chr1:245318287-245872734:+ chr1:245809582:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245121920:+ chr1:245132984-245290466:+ chr1:245285222:+ chr1:245663543,chr1:245663541 chr1:245086179,chr1:245086174 NA NA chr1:245826845,chr1:245826843 chr1:245249481,chr1:245249476 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Microtub_bd|479-611|6.8e-18^Kinesin|493-798|7e-63 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[27821] 17 18 17 10.36 ONLY_REF_SPLICE YES_LDAS 0.3378 GT 1.5058 AG 1.9329 ENST00000407071.7 1-2258 ENST00000447569.6 374-402 chr1|+|[0]245155425-245155487[2]|[0]245156282-245156683[2]|[0]245366834-245367367[2]|[0]245419579-245419745[1]|[2]245540767-245540950[2]|[0]245602577-245602783[2]|[0]245607651-245607744[0]|[1]245609266-245609528[2]|[0]245611793-245611976[0]|[1]245646121-245646280[1]<==>chr1|+|[1]245121920-245121948[2] atgaattcggtagctgggaataaagagaggcttgcggtctccaccaggggcaagaaatacggggtgaatgaagtctgctcgcccaccaagcccgcagcgcccttctccccggaaagctggtaccggaaagcatacgaggagtcgcgcgccggcagccggcccactcctgagggcgcgggctcagcgctcggctcctcggggaccccgtctcccggctcgggcacctcgtccccgagctcgttcaccggctccccgggacccgcctcccccggcatcggcactagttcgccgggctccttgggcggctctccgggcttcggcacaggctccccgggctccggcagcggcggcggctcctcccccggctcggaccgcggcgtctggtgcgagaactgcaacgcccgcctggtggagctcaagaggcaggccctgaggttgctcctcccggggcccttcccgggcaaggaccctgctttctcggctgtgattcacgacaaactccaggtccccaacaccatccggaaggcatggaacgaccgggacaaccgctgtgacatttgcgccactcacctgaaccagttgaagcaggaggccatccagatggtgctgacgttggagcaggcagccggcagtgagcactacgacgcctcgccctgctccccgccaccgctctccaacatccccaccctggtggggtcccggcacgtgggtgggctccagcagcccagagactgggcctttgtgcccgccccctgtgccacctccaactacacaggcttcgccaacaagcacggcagcaaacccagcagccttggggtcagcaatggggcggaaaagaagagcgggtccccaacccaccaggccaaggtcagcctccagatggccaccagtccaagcaatgggaacatcctcaattcggtggccatccaggctcaccagtacctggatggcacctggtccctgtcgagaaccaacggggtcaccctgtacccataccagatctcccagctgatgacagagagtagccgggagggactaacagaagcagtgctgaaccgctacaatgcagacaagccttccgcctgcagtgtcccagcctcgcagggctcctgcgtggccagcgagacttccacaggcacatcggtggccgcctccttctttgcacgagctgcccagaagttaaatctgtcttctaaaaagaagaaacatcggccttccacttcttccgctgccgaaccaccgctctttgcaaccagcttcagtgggattctgcagacctcccctcccccagccccaccctgcctgctgagggctgtcaacaaggtgaaggacaccccggggctgggcaaggtgaaagtcatgcttcgcatctgttccaccttggctcgagatacttcagaatccagctctttcttaaaggtggacccacggaagaagcagatcaccttgtacgatcccctgacttgtggaggtcaaaatgccttccaaaagagaggcaaccaggttcctccaaagatgtttgccttcgatgcagtttttccacaagacgcttctcaggctgaagtgtgtgcaggcaccgtggcagaggtgatccagtctgtggtcaacggggcagatggctgcgtgttctgtttcggccacgccaaactgggaaaatcctacaccatgatcggaaaggatgattccatgcagaacctgggcatcattccctgtgccatctcttggctcttcaagctcataaacgaacgcaaggaaaagaccggcgcccgtttctcagtccgggtttccgccgtggaagtgtgggggaaggaggagaacctgcgggacctgctgtcggaggtggccacgggcagcctgcaggacggccagtccccgggcgtgtacctctgtgaggaccccatctgcggcacgcagctgcagaaccagagcgagctgcgggcccccaccgcagagaaggctgcctttttcctggatgccgccattgcctcccgcaggagccaccaacaggactgtgatgaggacgaccaccgcaactcacacgtgttcttcacactgcacatctaccagtaccggatggagaagagcgggaaagggggaatgtctggaggtcgcagccgcctgcatctcattgatctcggcagctgtgtgaaagctcttagcaaaaatcgagaaggaggctcagggctgtgtctctcgctgtctgctctgggcaatgtcatcctggctctcgtcaatggcagcaaacacattccatacaaATGGAGTTTCGCTCCGTCGCCCAGGCTGA MNSVAGNKERLAVSTRGKKYGVNEVCSPTKPAAPFSPESWYRKAYEESRAGSRPTPEGAGSALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGTSSPGSLGGSPGFGTGSPGSGSGGGSSPGSDRGVWCENCNARLVELKRQALRLLLPGPFPGKDPAFSAVIHDKLQVPNTIRKAWNDRDNRCDICATHLNQLKQEAIQMVLTLEQAAGSEHYDASPCSPPPLSNIPTLVGSRHVGGLQQPRDWAFVPAPCATSNYTGFANKHGSKPSSLGVSNGAEKKSGSPTHQAKVSLQMATSPSNGNILNSVAIQAHQYLDGTWSLSRTNGVTLYPYQISQLMTESSREGLTEAVLNRYNADKPSACSVPASQGSCVASETSTGTSVAASFFARAAQKLNLSSKKKKHRPSTSSAAEPPLFATSFSGILQTSPPPAPPCLLRAVNKVKDTPGLGKVKVMLRICSTLARDTSESSSFLKVDPRKKQITLYDPLTCGGQNAFQKRGNQVPPKMFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQNLGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATGSLQDGQSPGVYLCEDPICGTQLQNQSELRAPTAEKAAFFLDAAIASRRSHQQDCDEDDHRNSHVFFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHIPYKWSFAPSPRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32303 USP43::CNTLN ENSG00000154914.17::ENSG00000044459.15 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1900 FALSE NA FALSE NA USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9666751:+ chr17:9548015-9633004:+ chr17:9570068:+ CNTLN ENSG00000044459.15 protein_coding + + chr9:17134982-17503923:+ chr9:17226203:+ chr9:17134980-17503921:+ chr9:17226201:+ chr17:9674184,chr17:9674183 chr9:17213328,chr9:17213324 NA NA chr17:9577501,chr17:9577500 chr9:17213326,chr9:17213322 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UCH|102-702|4.3e-54^UCH_1|102-275|1.4e-06^UCH_1|557-592|0.0025 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr9] 17 18 17 18 ONLY_REF_SPLICE YES_LDAS 0.4322 GT 1.8295 AG 1.4256 ENST00000570475.5 1-740 ENST00000380647.8 450-4221 chr17|+|[0]9645633-9646136[2]|[0]9656403-9656534[2]|[0]9666648-9666751[1]<==>chr9|+|[2]17226203-17226287[2]|[0]17235658-17235792[2]|[0]17236409-17236588[2]|[0]17273733-17273866[1]|[2]17298190-17298352[2]|[0]17309058-17309252[2]|[0]17330632-17330808[2]|[0]17332605-17332730[2]|[0]17340827-17340948[1]|[2]17342325-17342444[1]|[2]17366617-17366717[0]|[1]17388162-17388253[2]|[0]17394534-17395069[1]|[2]17409293-17409473[2]|[0]17415788-17415881[0]|[1]17415966-17416189[2]|[0]17457524-17457715[2]|[0]17462916-17463013[1]|[2]17464497-17464623[2]|[0]17465981-17466118[2]|[0]17466706-17466891[2]|[0]17484295-17484480[2]|[0]17486989-17487066[2]|[0]17502551-17502652[2] atggacctgggccccggggacgcggcaggagggggaccgctcgcgccccggccccgccgccgccgctccctgcgccgcctgttcagccgcttcctgctggcgctgggcagccgctcacgccccggggactcaccgccccggccccagccgggacactgtgatggcgacggtgaggggggcttcgcctgcgccccgggcccagttccagcggcccccgggagccccggggaggaacgcccgcccggaccccagccccagctccagctccccgccggcgatggggcgcggccgccgggcgctcagggcttgaagaaccacggcaacacctgtttcatgaacgcggtggtgcagtgtctcagcaacaccgacctgctggccgagttcctggcgctggggcgctaccgggcggctccgggccgcgccgaggtcaccgagcagctggcggcgctggtgcgcgcgctctggactcgcgaatacacgccccaactttccgcggagttcaagaatgcagtttccaagtacggctctcagttccaaggcaattcccagcacgacgccctggaattcctgctctggttgctggatcgtgtacatgaggacctggagggttcatcccgagggccggtgtcggagaagcttccgcctgaagccactaaaacctctgagaactgcctgtcaccatcagctcagcttcctctaggtcaaagctttgtgcaaagccactttcaagcacaatatagAGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAGAAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAGAGAGAGTCAGTACTGAAACAGGAAATAAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGACTTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAGGACACTAAGGAGTGTGTACAGAACAAAGAAGAGCAAAACAGACTAGTTATAAAAAATCTGGAGGAGGAAAACAAGAAATTAAGTACCCGCTGCACTGACCTGCTAAATGACCTGGAGAAATTGAGGAAGCAGGAAGCACATTTGAGAAAAGAAAAATATAGCACTGATGCAAAAATAAAGACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACAATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGTCAGGAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAACTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAATGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCTAAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACTACTCAGCACAGGTACCTCATCGCCCATCCTTATCAAGCTTAGAAACGTTAATGGTTTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTAAAGATAGCAAATGAAAAACTGTCAGAAAACATATCTGCCAACAAGGGTTTCTCCCGAAAGAGCATCATGACAAGTGCTGAAGGAAAACATAAGGAACCACCTGTGAAACGTTCAAGGTCTTTGTCCCCAAAGAGCTCTTTCACAGACTCAGAAGAGCTACAGAAGCTGAGAAAAGCTGAAAGAAAGATTGAAAACTTAGAGAAGGCACTACAACTAAAGAGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAAAAACGCAAGGAACGGCTACAGATGTTACAGACCAACTACAGAGCAGTAAAAGAGCAATTAAAACAGTGGGAAGAAGGCAGTGGCATGACTGAAATCAGGAAAATAAAGAGAGCAGATCCCCAACAACTTCGACAAGAAGATTCTGACGCTGTGTGGAATGAACTGGCATATTTCAAAAGGGAAAACCAGGAGCTAATGATTCAAAAGATGAATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGAATAGATGTGTGGCAGAGAGAAGAGAAGAACAGCTCTTTAGATCTGGTGAAGATGATGAGGTCAAGAGGAGTACTCCAGAGAAGAATGGAAAAGAAATGTTGGAGCAGACATTACAGAAGGTCACTGAGTTGGAAAATCGGCTGAAATCTTTTGAGAAAAGGTCGAGAAAATTAAAAGAAGGGAATAAAAAATTAATGAAAGAAAATGATTTTCTGAAATCCCTCTTAAAACAGCAACAAGAAGATACAGAGACCAGAGAAAAAGAGCTAGAACAGATAATAAAGGGGAGTAAAGATGTAGAAAAAGAAAATACTGAACTTCAAGTAAAAATCAGTGAGCTGGAGACAGAAGTCACTTCCCTGAGGAGACAAGTGGCAGAAGCTAATGCATTGAGAAATGAAAATGAAGAGCTGATCAACCCAATGGAGAAATCACACCAGTCAGCAGACAGAGCTAAATCCGAGATGGCCACCATGAAAGTGAGATCTGGACGATATGATTGTAAGACAACTATGACCAAGGTTAAATTTAAAGCTGCGAAGAAAAATTGCTCTGTGGGTCGTCACCACACTGTTCTCAATCATTCCATCAAGGTTATGAGCAATGTGTTTGAGAACCTCAGCAAGGACGGCTGGGAGGATGTGAGTGAAAGCAGCAGTGATTCTGAAGCACAGACCTCTCAAACTTTGGGAACAATTATTGTAGAAACATCCCAGAAAATAAGTCCTACGGAAGATGGAAAAGACCAGAAAGAAAGTGATCCAACAGAAGACAGCCAAACACAAGGAAAAGAAATAGTACAGACATATTTAAATATAGATGGCAAGACCCCAAAGGACTATTTTCATGATAAGAATGCCAAAAAACCAACTTTTCAAAAGAAGAATTGCAAGATGCAAAAGAGTTCACATACAGCAGTTCCTACTAGAGTCAACAGAGAAAAGTACAAAAATATAACTGCCCAGAAATCAAGTAGCAATATTATTTTATTACGAGAACGGATTATATCCTTGCAACAACAAAACAGTGTACTTCAGAATGCCAAGAAAACAGCAGAATTGTCTGTTAAAGAATATAAAGAAGTTAATGAAAAGCTCCTCCATCAACAGCAAGTATCCGATCAACGATTTCAGACAAGCAGGCAGACAATAAAGAAGCTAAATTTGGATTTGGCTGGGCTTCGGAAAGAAAAAGAAGATTTACTAAAGAAATTGGAGTCCTCATCTGAAATCACAAGTTTGGCAGAAGAAAATTCCCAGGTAACATTTCCACGGATACAAGTTACATCACTTAGTCCTTCAAGGAGCATGGATTTGGAAATGAAGCAATTGCAGTATAAACTAAAGAATGCTACTAATGAACTCACTAAACAGTCATCAAATGTGAAGACTTTGAAATTTGAACTCCTAGCAAAAGAAGAACACATAAAGGAAATGCATGAAAAGATATCTCGAATGGAGAGGGATATAACTATGAAAAGACATTTGATAGAGGACTTGAAATTTCGACAGAAAGTAAATTTGGAAAGTAACAAGAGTTTTAGTGAAATGTTACAAAATCTTGATAAAAAGGTAAAGACATTAACTGAAGAATGTTCCAACAAGAAGGTATCAATTGATTCACTAAAGCAAAGACTTAACGTTGCTGTAAAAGAAAAGTCACAGTATGAACAGATGTATCAGAAATCTAAAGAGGAGTTAGAAAAAAAGGATCTCAAGCTTACTCTCCTAGTATCAAGAATAAGTGAGACTGAATCTGCAATGGCAGAAATTGAAACAGCAGCATCTAAGCAGCTTCAAGAATTAGCATTGCAAAGTGAACAGGTCCTAGAAGGTGCACAGAAGACATTGCTGTTAGCCAATGAAAAAGTAGAAGAGTTCACCACATTTGTGAAGGCTTTGGCCAAAGAGTTGCAAAATGATGTCCATGTGGTAAGGCGACAAATAAGAGAGCTTAAAAAAATGAAGAAAAACAGGGACGCCTGTAAAACCTCAACCCATAAAGCCCAGACCTTGGCAGCTTCTATCCTGAACATTTCACGGTCAGATTTAGAGGAAATATTAGACACAGAAGATCAAGTGGAAATTGAAAAAACAAAAATTGATGCTGAAAATGACAAGGAATGGATGTTGTACATTCAGAAACTTCTTGAAGGACAGCTTCCTTTTGCCTCATATTTACTAGAAGCAGTACTGGAAAAAATAAATGAAAAAAAGAAACTAGTTGAAGGATATTTCACAATTATGAAAGATATTAGATGA MDLGPGDAAGGGPLAPRPRRRRSLRRLFSRFLLALGSRSRPGDSPPRPQPGHCDGDGEGGFACAPGPVPAAPGSPGEERPPGPQPQLQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEATKTSENCLSPSAQLPLGQSFVQSHFQAQYREKQKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSDLEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANKGFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETEVTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSESSSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTQGKEIVQTYLNIDGKTPKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSNIILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSSNVKTLKFELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSEQVLEGAQKTLLLANEKVEEFTTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFTIMKDIR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32305 TMEM260::RAB1B ENSG00000070269.14::ENSG00000174903.16 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1905 FALSE NA FALSE NA TMEM260 ENSG00000070269.14 protein_coding + + chr14:56488354-56650606:+ chr14:56636598:+ chr14:56955072-57117324:+ chr14:57103316:+ RAB1B ENSG00000174903.16 protein_coding + + chr11:66268590-66277492:+ chr11:66271797:+ chr11:66036061-66044963:+ chr11:66039268:+ chr14:56639456 chr11:66269228 NA NA chr14:57106174 chr11:66036699 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF2723|52-211|1.4e-43 Ras-PARTIAL|~15-170|1.1e-71^Roc-PARTIAL|~15-124|8.3e-40^Arf-PARTIAL|~15-134|1.3e-19^GTP_EFTU-PARTIAL|~15-28|1.3^MMR_HSR1-PARTIAL|~15-122|6.4e-09^RsgA_GTPase-PARTIAL|~15-31|0.00012^SRPRB-PARTIAL|~15-129|2.2e-08^Gtr1_RagA-PARTIAL|~15-130|4.5e-08^AAA-PARTIAL|~15-90|0.00042^FeoB_N-PARTIAL|~15-161|2.3e-05^ABC_tran-PARTIAL|~15-106|4.2e-05^AAA_7-PARTIAL|~15-46|0.00017^AAA_16-PARTIAL|~15-33|8.1e-05^Septin-PARTIAL|~15-66|0.00014^AAA_29-PARTIAL|~15-25|0.00014^AAA_22-PARTIAL|~15-44|0.0001^PduV-EutP-PARTIAL|~15-62|0.00043^AAA_5-PARTIAL|~15-32|0.00021^TniB-PARTIAL|~15-32|0.00029^GTP_EFTU|43-165|6.1e-10^PduV-EutP|75-105|0.46^AAA_7|107-173|0.25^RsgA_GTPase|108-169|3.1e-05^MMR_HSR1|126-164|0.44^AAA_5|127-127|2.8^Roc|128-159|2.6^AAA|134-157|0.036 ["DepMap2023"];INTERCHROMOSOMAL[chr14--chr11] 15 19 15 19 ONLY_REF_SPLICE YES_LDAS 0.4198 GT 1.9656 AG 1.8892 ENST00000261556.11 1-1869 ENST00000311481.11 15-606 chr14|+|[0]56579915-56580074[0]|[1]56585001-56585032[2]|[0]56585761-56585912[1]|[2]56603815-56603992[2]|[0]56605570-56605683[2]|[0]56609106-56609285[2]|[0]56612245-56612285[1]|[2]56615944-56616027[1]|[2]56617183-56617297[2]|[0]56618594-56618763[1]|[2]56621531-56621702[2]|[0]56625382-56625530[1]|[2]56632995-56633171[1]|[2]56634899-56634952[1]|[2]56636508-56636598[2]<==>chr11|+|[2]66271797-66271869[2]|[0]66272157-66272252[2]|[0]66272365-66272460[2]|[0]66275804-66275935[2]|[0]66276044-66276238[2] atgagtccccatggcgacggcaggggccaggcccaggggcgggcagtccgagtggggctgcggcgctccgggggcatccgcggcggcgtggcggtgttcgccgccgtggccgcagtgttcaccttcaccctgcccccttcggtaccggggggagactccggggaactgatcacagccgcacatgagcttggagttgcccatcctcctggctatcctttgttcacgctggtggctaaactggcaattacactgtttccttttggttcaattgcctaccgcgtcaatcttctctgtggcttatttggagcagtagctgcatcattactttttttcaccgttttcaggctttctggctcatctgctggaggaatccttgctgcgggggtgttttcattttctcgtctaacatggcagtggtccattgcagcagaggtttttagcttaaacaatctctttgtggggctgcttatggctcttactgtacattttgaggaagcagcaactgctaaggagagatcaaaggtagctaaaattggtgctttctgctgtggccttagtttatgtaaccagcacacaataatactctatgttttgtgcataataccttggattctctttcaacttttaaaaaagaaggaactctccctgggctctttgttgaagttgagcctgtacttctctgctggtttgctgccctatgtccaccttcccatctcatcttaccttaatcacgcccggtggacctggggagaccagacaacactgcaaggatttttgacacattttctcagggaagaatatggaaccttcagcctggccaaatctgaaataggatccagtatgtctgaaatactgctttctcaagtaacaaatatgaggaccgaactctcattcaacatccaagcccttgcagtttgtgcaaatatatgtttagcaacaaaggacagacagaatccatcattagtatggctttttactggaatgttttgcatttattcattgttctttgcttggagagcaaatttagatatttcaaaaccacttttcatgggtgtggtggaacgattctggatgcagagcaatgcagtagtggccgtcctcgctggcattggtttggctgcagttgtgtctgagactaaccgagtgctgaatagcaatgggcttcagtgtctggaatggctttctgcaactctttttgtagtttaccaaatatattctaattacagtgtttgtgaccaaaggaccaactatgtgattgataagttcgcaaagaaccttctcacctctatgcctcatgatgcaattatcttactcagaggagatttgccaggaaattctctccgttacatgcattactgtgaggggttgaggcctgacatttcattagtggatcaggaaatgatgacttacgagtggtatttacccaagatggcaaagcacttgccaggtgtcaactttcctgggaaccggtggaatcctgtggaaggaatattacctagtggaatggtcacatttaatctttatcattttcttgaagtaaataaacaaaaagaaacatttgtttgcataggaattcatgaaggcgacccaacctggaaaaagaactattcactttggccatgggggtcttgtgacaaattagttcctttggagattgtattcaaccctgaggaatggattaaacttacaaaaagtatctataactggaccgaagaatatggaaggtttgatccatcttcttgggaatctgtggccaatgaagaaatgtggcaagcgaggatgaaaacaccgttcttcatctttaacctggcagaaactgctcacatgccttcaaaagtgaaagctcaactctacgctcaagcatatgacTGACTACCTGTTTAAGCTGCTTTTGATTGGCGACTCAGGCGTGGGCAAGTCATGCCTGCTCCTGCGGTTTGCTGATGACACGTACACAGAGAGCTACATCAGCACCATCGGGGTGGACTTCAAGATCCGAACCATCGAGCTGGATGGCAAAACTATCAAACTTCAGATCTGGGACACAGCGGGCCAGGAACGGTTCCGGACCATCACTTCCAGCTACTACCGGGGGGCTCATGGCATCATCGTGGTGTATGACGTCACTGACCAGGAATCCTACGCCAACGTGAAGCAGTGGCTGCAGGAGATTGACCGCTATGCCAGCGAGAACGTCAATAAGCTCCTGGTGGGCAACAAGAGCGACCTCACCACCAAGAAGGTGGTGGACAACACCACAGCCAAGGAGTTTGCAGACTCTCTGGGCATCCCCTTCTTGGAGACGAGCGCCAAGAATGCCACCAATGTCGAGCAGGCGTTCATGACCATGGCTGCTGAAATCAAAAAGCGGATGGGGCCTGGAGCAGCCTCTGGGGGCGAGCGGCCCAATCTCAAGATCGACAGCACCCCTGTAAAGCCGGCTGGCGGTGGCTGTTGCTAG MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAAHELGVAHPPGYPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSSAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGAFCCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGLLPYVHLPISSYLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSSMSEILLSQVTNMRTELSFNIQALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVIDKFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNRWNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWIKLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFIFNLAETAHMPSKVKAQLYAQAYD*LPV*AAFDWRLRRGQVMPAPAVC**HVHRELHQHHRGGLQDPNHRAGWQNYQTSDLGHSGPGTVPDHHFQLLPGGSWHHRGV*RH*PGILRQREAVAAGD*PLCQRERQ*APGGQQERPHHQEGGGQHHSQGVCRLSGHPLLGDERQECHQCRAGVHDHGC*NQKADGAWSSLWGRAAQSQDRQHPCKAGWRWLLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32310 KRT7::OR7E47P ENSG00000135480.17::ENSG00000290965.1 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3485 TRUE 1322 KRT7 ENSG00000135480.17 protein_coding + + chr12:52232520-52252186:+ chr12:52243137:+ chr12:52626304-52645970:+ chr12:52636921:+ OR7E47P ENSG00000290965.1 lncRNA + + chr12:52084744-52108250:+ chr12:52107379:+ chr12:52478528-52502034:+ chr12:52501163:+ chr12:52250834,chr12:52250834 chr12:52105488,chr12:52105485 NA NA chr12:52644618,chr12:52644618 chr12:52499272,chr12:52499269 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.14Mb] 11 11 11 0.46 ONLY_REF_SPLICE YES_LDAS 0.1415 GT 1.6402 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32314 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1903 TRUE 3493 TRUE 1326 HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63833822:- chr15:63900817-64126147:- chr15:64126021:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:63908600:- chr15:64199235-64364232:- chr15:64200799:- chr15:63819617,chr15:63819622,chr15:63819627 chr15:63909835,chr15:63909837,chr15:63909837 NA NA chr15:64111816,chr15:64111821,chr15:64111826 chr15:64202034,chr15:64202036,chr15:64202036 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.07Mb];LOCAL_REARRANGEMENT:-:[73094] 9 12 9 7.2 ONLY_REF_SPLICE YES_LDAS 0.2 GT 1.8062 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 TRUE,TRUE,TRUE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32316 KIF26B::EFCAB2 ENSG00000162849.16::ENSG00000203666.13 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1902 TRUE 3491 TRUE 1325 KIF26B ENSG00000162849.16 protein_coding + + chr1:245154985-245709432:+ chr1:245646280:+ chr1:245318287-245872734:+ chr1:245809582:+ EFCAB2 ENSG00000203666.13 protein_coding + + chr1:244969682-245127164:+ chr1:245087245:+ chr1:245132984-245290466:+ chr1:245250547:+ chr1:245663543,chr1:245663541 chr1:245086179,chr1:245086174 NA NA chr1:245826845,chr1:245826843 chr1:245249481,chr1:245249476 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Microtub_bd|479-611|6.8e-18^Kinesin|493-798|7e-63 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.03Mb];LOCAL_REARRANGEMENT:+:[27821] 8 22 8 11.31 ONLY_REF_SPLICE YES_LDAS 0.2385 GT 1.5058 AG 1.7465 ENST00000407071.7 1-2258 ENST00000366523.6 374-489 chr1|+|[0]245155425-245155487[2]|[0]245156282-245156683[2]|[0]245366834-245367367[2]|[0]245419579-245419745[1]|[2]245540767-245540950[2]|[0]245602577-245602783[2]|[0]245607651-245607744[0]|[1]245609266-245609528[2]|[0]245611793-245611976[0]|[1]245646121-245646280[1]<==>chr1|+|[1]245087245-245087360[2] atgaattcggtagctgggaataaagagaggcttgcggtctccaccaggggcaagaaatacggggtgaatgaagtctgctcgcccaccaagcccgcagcgcccttctccccggaaagctggtaccggaaagcatacgaggagtcgcgcgccggcagccggcccactcctgagggcgcgggctcagcgctcggctcctcggggaccccgtctcccggctcgggcacctcgtccccgagctcgttcaccggctccccgggacccgcctcccccggcatcggcactagttcgccgggctccttgggcggctctccgggcttcggcacaggctccccgggctccggcagcggcggcggctcctcccccggctcggaccgcggcgtctggtgcgagaactgcaacgcccgcctggtggagctcaagaggcaggccctgaggttgctcctcccggggcccttcccgggcaaggaccctgctttctcggctgtgattcacgacaaactccaggtccccaacaccatccggaaggcatggaacgaccgggacaaccgctgtgacatttgcgccactcacctgaaccagttgaagcaggaggccatccagatggtgctgacgttggagcaggcagccggcagtgagcactacgacgcctcgccctgctccccgccaccgctctccaacatccccaccctggtggggtcccggcacgtgggtgggctccagcagcccagagactgggcctttgtgcccgccccctgtgccacctccaactacacaggcttcgccaacaagcacggcagcaaacccagcagccttggggtcagcaatggggcggaaaagaagagcgggtccccaacccaccaggccaaggtcagcctccagatggccaccagtccaagcaatgggaacatcctcaattcggtggccatccaggctcaccagtacctggatggcacctggtccctgtcgagaaccaacggggtcaccctgtacccataccagatctcccagctgatgacagagagtagccgggagggactaacagaagcagtgctgaaccgctacaatgcagacaagccttccgcctgcagtgtcccagcctcgcagggctcctgcgtggccagcgagacttccacaggcacatcggtggccgcctccttctttgcacgagctgcccagaagttaaatctgtcttctaaaaagaagaaacatcggccttccacttcttccgctgccgaaccaccgctctttgcaaccagcttcagtgggattctgcagacctcccctcccccagccccaccctgcctgctgagggctgtcaacaaggtgaaggacaccccggggctgggcaaggtgaaagtcatgcttcgcatctgttccaccttggctcgagatacttcagaatccagctctttcttaaaggtggacccacggaagaagcagatcaccttgtacgatcccctgacttgtggaggtcaaaatgccttccaaaagagaggcaaccaggttcctccaaagatgtttgccttcgatgcagtttttccacaagacgcttctcaggctgaagtgtgtgcaggcaccgtggcagaggtgatccagtctgtggtcaacggggcagatggctgcgtgttctgtttcggccacgccaaactgggaaaatcctacaccatgatcggaaaggatgattccatgcagaacctgggcatcattccctgtgccatctcttggctcttcaagctcataaacgaacgcaaggaaaagaccggcgcccgtttctcagtccgggtttccgccgtggaagtgtgggggaaggaggagaacctgcgggacctgctgtcggaggtggccacgggcagcctgcaggacggccagtccccgggcgtgtacctctgtgaggaccccatctgcggcacgcagctgcagaaccagagcgagctgcgggcccccaccgcagagaaggctgcctttttcctggatgccgccattgcctcccgcaggagccaccaacaggactgtgatgaggacgaccaccgcaactcacacgtgttcttcacactgcacatctaccagtaccggatggagaagagcgggaaagggggaatgtctggaggtcgcagccgcctgcatctcattgatctcggcagctgtgtgaaagctcttagcaaaaatcgagaaggaggctcagggctgtgtctctcgctgtctgctctgggcaatgtcatcctggctctcgtcaatggcagcaaacacattccatacaaGTGAGCCTTTTTCTCAAGAGGAAATGGAAGAAATGTTGTCTGCTGCAATTGATCCAGAATCAAATTCAATTAATTACAAGGACTATATAACAATGATGGTGATAGATGAAAATTAA MNSVAGNKERLAVSTRGKKYGVNEVCSPTKPAAPFSPESWYRKAYEESRAGSRPTPEGAGSALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGTSSPGSLGGSPGFGTGSPGSGSGGGSSPGSDRGVWCENCNARLVELKRQALRLLLPGPFPGKDPAFSAVIHDKLQVPNTIRKAWNDRDNRCDICATHLNQLKQEAIQMVLTLEQAAGSEHYDASPCSPPPLSNIPTLVGSRHVGGLQQPRDWAFVPAPCATSNYTGFANKHGSKPSSLGVSNGAEKKSGSPTHQAKVSLQMATSPSNGNILNSVAIQAHQYLDGTWSLSRTNGVTLYPYQISQLMTESSREGLTEAVLNRYNADKPSACSVPASQGSCVASETSTGTSVAASFFARAAQKLNLSSKKKKHRPSTSSAAEPPLFATSFSGILQTSPPPAPPCLLRAVNKVKDTPGLGKVKVMLRICSTLARDTSESSSFLKVDPRKKQITLYDPLTCGGQNAFQKRGNQVPPKMFAFDAVFPQDASQAEVCAGTVAEVIQSVVNGADGCVFCFGHAKLGKSYTMIGKDDSMQNLGIIPCAISWLFKLINERKEKTGARFSVRVSAVEVWGKEENLRDLLSEVATGSLQDGQSPGVYLCEDPICGTQLQNQSELRAPTAEKAAFFLDAAIASRRSHQQDCDEDDHRNSHVFFTLHIYQYRMEKSGKGGMSGGRSRLHLIDLGSCVKALSKNREGGSGLCLSLSALGNVILALVNGSKHIPYK*AFFSRGNGRNVVCCN*SRIKFN*LQGLYNNDGDR*KL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32319 HERC1::DAPK2 ENSG00000103657.14::ENSG00000035664.11 DMS53 SRR8615998 SRR8639219 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1904 TRUE 3493 TRUE 1326 HERC1 ENSG00000103657.14 protein_coding - - chr15:63608618-63833948:- chr15:63833827:- chr15:63900817-64126147:- chr15:64126026:- DAPK2 ENSG00000035664.11 protein_coding - - chr15:63907036-64072033:- chr15:63908600:- chr15:64199235-64364232:- chr15:64200799:- chr15:63819617,chr15:63819622,chr15:63819627 chr15:63909835,chr15:63909837,chr15:63909837 NA NA chr15:64111816,chr15:64111821,chr15:64111826 chr15:64202034,chr15:64202036,chr15:64202036 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.07Mb];LOCAL_REARRANGEMENT:-:[73094] 6 12 6 4.8 ONLY_REF_SPLICE YES_LDAS 0.1334 GT 1.7465 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Death-associated protein kinase 2 CAMK DAPK Q9UIK4 TRUE Breast,Adrenal,Bladder,Ovary no_match TRUE Breast invasive carcinoma,Bladder Urothelial Carcinoma,Liver hepatocellular carcinoma,Adrenocortical carcinoma,Stomach adenocarcinoma BREAST,BLADDER,LIVER,ADRENAL_GLAND,STOMACH no_match 64126026,64126026,64126026,63956669,63988323|63988323 TRUE,TRUE,TRUE,FALSE,FALSE|FALSE 64204396,64231560,64332466,64275953,64263760|64231560 FALSE,FALSE,FALSE,FALSE,FALSE|FALSE PARTIALLY,YES,YES,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-5UTR,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32322 PTPRK::SCN11A ENSG00000152894.15::ENSG00000168356.13 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PTPRK ENSG00000152894.15 protein_coding - - chr6:127968785-128520616:- chr6:128184432:- chr6:128289930-128841761:- chr6:128505577:- SCN11A ENSG00000168356.13 protein_coding - - chr3:38845764-39052157:- chr3:39032503:- chr3:38887255-39093648:- chr3:39073994:- chr6:128132136,chr6:128132138 chr3:39034675,chr3:39034674 NA NA chr6:128453281,chr6:128453283 chr3:39076166,chr3:39076165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PTPRK:Oncogene"];INTERCHROMOSOMAL[chr6--chr3] 540 227 540 227 ONLY_REF_SPLICE YES_LDAS 9.605 GT 1.7968 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein tyrosine phosphatase, receptor type, K 1 colorectal epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32323 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87682734:- chr3:87690562-87842779:- chr3:87731884:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["EPHA3:Oncogene","EPHA3:FoundationOne_panel","EPHA3:ArcherDX_panel"] 59 127 59 108.48 ONLY_REF_SPLICE YES_LDAS 2.0973 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 32324 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87644502:- chr3:87690562-87842779:- chr3:87693652:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["EPHA3:Oncogene","EPHA3:FoundationOne_panel","EPHA3:ArcherDX_panel"] 54 53 54 14.17 ONLY_REF_SPLICE YES_LDAS 0.8536 GT 1.9899 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 32325 ZFAND3::C6orf89 ENSG00000156639.12::ENSG00000198663.17 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1906 FALSE NA FALSE NA ZFAND3 ENSG00000156639.12 protein_coding + + chr6:37819727-38154624:+ chr6:37929999:+ chr6:37787503-38122400:+ chr6:37897775:+ C6orf89 ENSG00000198663.17 protein_coding + + chr6:36871870-36928964:+ chr6:36914284:+ chr6:36839646-36896740:+ chr6:36882060:+ chr6:38039463,chr6:38039458 chr6:36908905,chr6:36908897 NA NA chr6:38007239,chr6:38007234 chr6:36876681,chr6:36876673 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-AN1|13-21|0.52^zf-A20|19-36|4.5e-10^zf-AN1|31-39|0.34 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.89Mb] 51 48 51 46.67 ONLY_REF_SPLICE YES_LDAS 1.2231 GT 1.9656 AG 1.9086 ENST00000287218.9 1-112 ENST00000359359.6 86-726 chr6|+|[0]37819946-37820016[1]|[2]37929959-37929999[0]<==>chr6|+|[1]36914284-36914435[2]|[0]36914554-36914693[1]|[2]36916445-36916574[2]|[0]36919578-36919701[0]|[1]36923347-36923441[2] atgggagacgctgggagcgagcgcagcaaagcgcccagcctgccgcctcgctgtccctgcggcttctgggggtccagcaagactatgaatctctgttccaaatgctttgctgACTTTGACCCCTGGTGGACAAACGACTGTGAGCAGAATGAGTCAGAGCCCATTCCTGCCAACTGCACTGGCTGTGCCCAGAAACACCTGAAGGTGATGCTCCTGGAAGACGCCCCAAGGAAATTTGAGAGGCTCCATCCACTGGTGATCAAGACGGGAAAGCCCCTGTTGGAGGAAGAGATTCAGCATTTTTTGTGCCAGTACCCTGAGGCGACAGAAGGCTTCTCTGAAGGGTTTTTCGCCAAGTGGTGGCGCTGCTTTCCTGAGCGGTGGTTCCCATTTCCTTATCCATGGAGGAGACCTCTGAACAGATCACAAATGTTACGTGAGCTTTTTCCTGTTTTCACTCACCTGCCATTTCCAAAAGATGCCTCTTTAAACAAGTGCTCCTTTCTTCACCCAGAACCTGTTGTGGGGAGTAAGATGCATAAGATGCCTGACCTATTTATCATTGGCAGCGGTGAGGCCATGTTGCAGCTCATCCCTCCCTTCCAGTGCCGAAGACATTGTCAGTCTGTGGCCATGCCAATAGAGCCAGGGGATATCGGCTATGTCGACACCACCCACTGGAAGGTCTACGTTATAGCCAGAGGGGTCCAGCCTTTGGTCATCTGCGATGGAACCGCTTTCTCAGAACTGTAG MGDAGSERSKAPSLPPRCPCGFWGSSKTMNLCSKCFADFDPWWTNDCEQNESEPIPANCTGCAQKHLKVMLLEDAPRKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWRRPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPFQCRRHCQSVAMPIEPGDIGYVDTTHWKVYVIARGVQPLVICDGTAFSEL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 37787792|37787792 FALSE|FALSE 36869997|36870056 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32330 HS1BP3::LDAH ENSG00000118960.13::ENSG00000118961.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1911 FALSE NA FALSE NA HS1BP3 ENSG00000118960.13 protein_coding - - chr2:20560448-20651130:- chr2:20623896:- chr2:20760208-20850890:- chr2:20823656:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20701652:- chr2:20883774-21022890:- chr2:20901412:- chr2:20622814,chr2:20622821 chr2:20727520,chr2:20727524 NA NA chr2:20822574,chr2:20822581 chr2:20927280,chr2:20927284 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PX|62-136|1.7e-17 none ["CCLE_StarF2019"] 10 5 10 5 ONLY_REF_SPLICE YES_LDAS 0.1878 GT 1.9656 AG 1.8892 ENST00000304031.8 1-920 ENST00000381090.7 704-1113 chr2|-|[1]20623896-20624031[1]|[0]20624732-20624892[2]|[1]20638436-20638652[1]|[0]20640973-20641180[0]|[2]20645340-20645505[2]|[1]20651032-20651063[0]<==>chr2|-|[2]20684896-20684923[2]|[1]20685547-20685657[2]|[1]20686907-20687094[0]|[2]20701570-20701652[1] atgcagtccccggcggtgctcgtcacctccaggcgacttcagaatgcccacactggcctcgacctgactgtgccccagcaccaggaggtacggggcaagatgatgtctggacacgtggagtaccagatcctggtggtgacccgtctggctgcgttcaagtcggccaagcacaggcccgaggatgtcgtccagttcttggtctccaaaaagtacagcgagattgaggagttttaccagaaactgagcagtcgttatgcagcagccagcctccccccactacccaggaaggtcctgtttgttggggagtctgacatccgggagaggagagccgtgttcaatgagatcctgcgctgtgtctccaaggatgccgagttggcaggcagcccagagctgctagagttcttaggtaccagatccccaggggctgcagggctcaccagcagagattcctctgtcctggatggcacagacagtcagacagggaatgatgaagaggctttcgacttttttgaggagcaagaccaagtggcagaagagggtccgcccgtccagagcctgaagggcgaggatgctgaggaatccttggaggaggaggaggcgctggaccctctgggcattatgcgctccaagaagcccaagaaacatcccaaagtggccgtgaaagccaagccctcgccccggctcaccatctttgacgaggaggtggaccctgatgaggggctctttggcccgggcaggaagctgtctccacaggacccctcggaggacgtgtcatccgtggaccccctgaagctatttgatgatcctgacctcggcggggccatccccctgggtgactccctcctgctgccagccgcctgtgagagtggagggcccacacccagcctcagccacagggacgcctccaaggaactgttcagCTAATGCTGCCTACCTTGGGGGCCAAGAAATGATGGAGGTGGTGAAGAGAGATGACGAAACCATAAAGGAGCATTTATGTAAGCTTACATTTTATTATGGTACTATAGATCCTTGGTGTCCAAAAGAGTACTATGAAGACATTAAGAAGGATTTTCCAGAAGGAGACATTCGACTCTGTGAGAAAAACATACCTCATGCTTTCATCACCCATTTTAACCAGGAAATGGCAGACATGATTGCTGACTCCCTAAAGGATGACTTGTCCAAAATAGGAAATCCCTCATGGCATTATCATTCCCTAAGGACAATGAGATGTCCCTCCGCTCAAATCCTAAAGCCCCCTGATGAAAGATTTGGCTCTGATTTGCTGCCAACTTATTGGTGGAAGAATCAGATTTCAAGAGACTGA MQSPAVLVTSRRLQNAHTGLDLTVPQHQEVRGKMMSGHVEYQILVVTRLAAFKSAKHRPEDVVQFLVSKKYSEIEEFYQKLSSRYAAASLPPLPRKVLFVGESDIRERRAVFNEILRCVSKDAELAGSPELLEFLGTRSPGAAGLTSRDSSVLDGTDSQTGNDEEAFDFFEEQDQVAEEGPPVQSLKGEDAEESLEEEEALDPLGIMRSKKPKKHPKVAVKAKPSPRLTIFDEEVDPDEGLFGPGRKLSPQDPSEDVSSVDPLKLFDDPDLGGAIPLGDSLLLPAACESGGPTPSLSHRDASKELFS*CCLPWGPRNDGGGEER*RNHKGAFM*AYILLWYYRSLVSKRVL*RH*EGFSRRRHSTL*EKHTSCFHHPF*PGNGRHDC*LPKG*LVQNRKSLMALSFPKDNEMSLRSNPKAP**KIWL*FAANLLVEESDFKRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32331 EPHA3::ENSG00000239572 ENSG00000044524.11::ENSG00000239572.3 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3502 TRUE 1329 EPHA3 ENSG00000044524.11 protein_coding + + chr3:89107621-89482134:+ chr3:89127273:+ chr3:89156771-89531284:+ chr3:89176423:+ ENSG00000239572 ENSG00000239572.3 lncRNA - - chr3:87641412-87793629:- chr3:87673028:- chr3:87690562-87842779:- chr3:87722178:- chr3:89128614,chr3:89128614 chr3:87689133,chr3:87689132 NA NA chr3:89177764,chr3:89177764 chr3:87738283,chr3:87738282 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["EPHA3:Oncogene","EPHA3:FoundationOne_panel","EPHA3:ArcherDX_panel"] 9 54 9 2.44 INCL_NON_REF_SPLICE YES_LDAS 0.1433 GT 1.9899 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Ephrin type-A receptor 3 TK Eph P29320 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE EPH receptor A3 2 lung cancer, CRC, melanoma epithelial missense FALSE NA NA NA NA NA NA NA NA NA 32332 FAM13B::SIL1 ENSG00000031003.11::ENSG00000120725.13 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1909 FALSE NA FALSE NA FAM13B ENSG00000031003.11 protein_coding - - chr5:137937960-138051961:- chr5:138032782:- chr5:137273649-137387650:- chr5:137368471:- SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139127853:- chr5:138282413-138629246:- chr5:138463542:- chr5:138029413 chr5:139243924 NA NA chr5:137365102 chr5:138579613 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.89Mb] 9 11 9 11 ONLY_REF_SPLICE YES_LDAS 0.2505 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32337 ARHGAP4::HCFC1 ENSG00000089820.17::ENSG00000172534.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1912 FALSE NA FALSE NA ARHGAP4 ENSG00000089820.17 protein_coding - - chrX:153907367-153934999:- chrX:153912700:- chrX:153172821-153200452:- chrX:153178154:- HCFC1 ENSG00000172534.14 protein_coding - - chrX:153947557-153971818:- chrX:153952958:- chrX:153213008-153237269:- chrX:153218409:- chrX:153911137 chrX:153953390 NA NA chrX:153176591 chrX:153218841 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FCH|43-116|9e-14^FCH|133-162|2.9^SH3_1|375-385|0.51^RhoGAP|561-707|7.8e-47^SH3_9|770-784|3.9^SH3_1|792-837|1.6e-15^SH3_2|792-840|5.9e-14^SH3_9|793-841|6.2e-16 fn3|425-453|6.9e-07^Pur_ac_phosph_N|425-460|3.2e-05^fn3|468-508|4.9e-06^Pur_ac_phosph_N|477-502|0.079^fn3|556-569|0.14 ["ARHGAP4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.01Mb];LOCAL_REARRANGEMENT:-:[12554] 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.1754 GT 1.9329 AG 1.7465 ENST00000370028.7 1-1662 ENST00000444191.5 221-1834 chrX|-|[2]153912700-153912802[2]|[1]153913024-153913051[1]|[0]153913218-153913302[0]|[2]153913409-153913600[0]|[2]153913778-153913879[0]|[2]153918832-153919053[0]|[2]153919155-153919283[0]|[2]153919567-153919686[0]|[2]153920626-153920808[0]|[2]153921097-153921159[0]|[2]153921365-153921527[2]|[1]153921605-153921809[1]|[0]153926136-153926202[0]<==>chrX|-|[2]153949347-153949386[2]|[1]153949553-153949616[1]|[0]153950243-153950543[0]|[2]153950813-153950998[0]|[2]153951350-153951487[0]|[2]153951589-153951707[1]|[0]153951841-153952161[1]|[0]153952514-153952958[0] atggccgctcacgggaagctgcggcgggagcgggggctgcaggctgagtatgagacgcaagtcaaagagatgcgctggcagctgagcgagcagctgcgctgcctggagctgcagggcgagctgcggcgggagttgctgcaggagctggcagagttcatgcggcgccgcgctgaggtggagctggaatactcccggggcctggaaaagctggccgagcgcttctccagccgtggaggccgcctggggagcagccgggagcaccaaagcttccggaaggagccgtccctcctgtcgcccttgcactgctgggcggtgctgctgcagcacacgcggcagcagagccgggagagcgcggccctgagtgaggtgctggccgggcccctggcccagcgcctgagtcacattgcagaggacgtggggcgcctggtcaagaagagcagggatctggagcagcagctgcaggatgagctcctggaggtggtctcagagctccagacggccaagaagacgtaccaggcatatcacatggagagcgtgaatgccgaggccaagctccgggaggccgagcggcaggaggagaagcgggcaggccggagtgtccccaccaccaccgctggtgccactgaggcagggcccctccgcaagagctccctcaagaagggagggaggctggtggagaagctctggcccccgcagaggcctgtggccgcttccagctgtgcacctgtgtgctggctccaagctgggtttctcgtgcaccctccatggtggggtgccatgtgcgcaccttccactcatcagcggcaggccaagttcatggagcacaaactcaagtgcacaaaggcgcgcaacgagtacctgcttagcctggctagtgtcaacgctgctgtcagtaactactacctgcatgacgtcttggacctcatggactgctgtgacacagggttccacctggccctggggcaggtgctccggagctacacggccgctgagagccgcacccaagcctcccaagtgcagggcctgggcagcctggaagaagctgtggaggccctggatcctccaggggacaaagccaaggttctcgaggtgcatgctaccgtcttctgtcccccgctgcgctttgactaccacccccatgatggggatgaggtggctgagatctgcgttgaaatggagctgcgggacgagattctgcccagagcccagaacatccagagccgcctggaccgacagaccattgagacagaggaggtgaacaagactctgaaggcgacactgcaggccctgctggaggtggtggcctcggatgacggggatgtgcttgattccttccagaccagcccctccaccgagtccctcaagtccaccagctcagacccaggcagccggcaggcgggccggaggcgcggccagcagcaggagaccgaaaccttctacctcacgaagctccaggagtatctgagtggacggagcatcctcgccaagctgcaggccaagcacgagaagctgcaggaggcccttcagcgaggtgacaaggaggagcaggaggtgtcttggacccagtacacacagagaaaattccagaagagccgccagccccgccccagctcccagtataaccagagactctttgggggagacatggagaagtttatccagCCCCCAGAGGAACTCCAGGTGTCGCCAGGTCCTCGCCAGCAGCTGCCGCCACGGCAGCTTCTGCAGTCGGCTTCCACAGCCCTGATGGGGGAGTCCGCCGAGGTCCTGTCAGCCTCCCAGACCCCTGAGCTCCCGGCCGCCGTGGATCTGAGCAGCACAGGGGAGCCATCTTCGGGCCAGGAGTCTGCCGGCTCTGCGGTGGTGGCCACTGTGGTGGTCCAGCCACCCCCACCCACACAGTCCGAAGTAGACCAGTTATCACTTCCCCAAGAGCTAATGGCCGAGGCCCAAGCTGGCACCACCACCCTCATGGTAACGGGGCTCACCCCCGAGGAGCTGGCAGTGACGGCTGCTGCAGAAGCAGCTGCCCAGGCCGCAGCCACGGAGGAAGCCCAGGCCCTGGCCATCCAGGCGGTGCTCCAGGCCGCGCAGCAGGCCGTCATGGCAGGCACCGGCGAGCCCATGGACACCTCCGAGGCAGCAGCAACCGTGACTCAGGCGGAGCTGGGGCACCTGTCGGCCGAGGGTCAGGAGGGCCAGGCCACCACCATACCCATTGTGCTGACACAGCAGGAGCTGGCTGCCCTGGTGCAGCAGCAGCAGCTGCAGGAGGCCCAGGCCCAGCAGCAGCATCACCACCTCCCCACTGAGGCCCTGGCCCCTGCCGACAGTCTCAACGACCCAGCCATTGAGAGCAATTGCCTCAATGAGCTGGCCGGCACGGTCCCCAGCACTGTGGCGCTGCTGCCCTCAACGGCCACTGAGAGCCTGGCTCCATCCAACACATTTGTGGCCCCCCAGCCGGTTGTGGTGGCCAGCCCAGCCAAGCTGCAGGCTGCAGCTACCCTGACCGAAGTGGCCAATGGCATCGAGTCCCTGGGTGTGAAGCCAGACCTGCCGCCCCCACCCAGCAAAGCCCCCATGAAGAAGGAAAACCAGTGGTTTGATGTGGGAGTCATTAAGGGCACCAATGTAATGGTGACACACTATTTCCTGCCACCAGATGATGCTGTCCCATCAGACGATGATTTGGGCACCGTCCCTGACTATAACCAGCTGAAGAAGCAGGAGCTGCAGCCAGGCACAGCCTATAAGTTTCGTGTTGCCGGAATCAATGCCTGTGGCCGGGGGCCCTTCAGCGAAATCTCAGCCTTTAAGACGTGCCTGCCTGGTTTCCCAGGGGCCCCTTGTGCCATTAAAATCAGCAAAAGTCCGGATGGTGCTCACCTCACCTGGGAGCCACCCTCTGTGACCTCCGGCAAGATTATCGAGTACTCCGTGTACCTGGCCATCCAGAGCTCACAGGCTGGGGGCGAGCTCAAGAGCTCCACCCCGGCCCAGCTGGCCTTCATGCGGGTGTACTGCGGGCCCAGCCCCTCCTGCCTGGTGCAGTCCTCCAGCCTTTCCAACGCCCACATCGACTACACCACCAAGCCCGCCATCATCTTCCGCATCGCCGCCCGCAATGAGAAGGGCTATGGCCCGGCCACACAAGTGAGGTGGCTGCAGGAAACCAGTAAAGACAGCTCTGGCACCAAGCCAGCCAACAAGCGGCCCATGTCCTCTCCAGAAATGAAATCTGCTCCAAAGAAATCTAAGGCCGATGGTCAGTGA MAAHGKLRRERGLQAEYETQVKEMRWQLSEQLRCLELQGELRRELLQELAEFMRRRAEVELEYSRGLEKLAERFSSRGGRLGSSREHQSFRKEPSLLSPLHCWAVLLQHTRQQSRESAALSEVLAGPLAQRLSHIAEDVGRLVKKSRDLEQQLQDELLEVVSELQTAKKTYQAYHMESVNAEAKLREAERQEEKRAGRSVPTTTAGATEAGPLRKSSLKKGGRLVEKLWPPQRPVAASSCAPVCWLQAGFLVHPPWWGAMCAPSTHQRQAKFMEHKLKCTKARNEYLLSLASVNAAVSNYYLHDVLDLMDCCDTGFHLALGQVLRSYTAAESRTQASQVQGLGSLEEAVEALDPPGDKAKVLEVHATVFCPPLRFDYHPHDGDEVAEICVEMELRDEILPRAQNIQSRLDRQTIETEEVNKTLKATLQALLEVVASDDGDVLDSFQTSPSTESLKSTSSDPGSRQAGRRRGQQQETETFYLTKLQEYLSGRSILAKLQAKHEKLQEALQRGDKEEQEVSWTQYTQRKFQKSRQPRPSSQYNQRLFGGDMEKFIQPPEELQVSPGPRQQLPPRQLLQSASTALMGESAEVLSASQTPELPAAVDLSSTGEPSSGQESAGSAVVATVVVQPPPPTQSEVDQLSLPQELMAEAQAGTTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMAGTGEPMDTSEAAATVTQAELGHLSAEGQEGQATTIPIVLTQQELAALVQQQQLQEAQAQQQHHHLPTEALAPADSLNDPAIESNCLNELAGTVPSTVALLPSTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPMKKENQWFDVGVIKGTNVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGTKPANKRPMSSPEMKSAPKKSKADGQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32342 BOK::FARP2 ENSG00000176720.6::ENSG00000006607.14 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BOK ENSG00000176720.6 protein_coding + + chr2:241551424-241574131:+ chr2:241572585:+ chr2:242490839-242513546:+ chr2:242512000:+ FARP2 ENSG00000006607.14 protein_coding + + chr2:241356285-241494841:+ chr2:241475857:+ chr2:242295700-242434256:+ chr2:242415272:+ chr2:241572872,chr2:241573034,chr2:241572873 chr2:241473786,chr2:241473786,chr2:241473781 NA NA chr2:242512287,chr2:242512449,chr2:242512288 chr2:242413201,chr2:242413201,chr2:242413196 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BOK:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.06Mb];LOCAL_REARRANGEMENT:+:[63880] 6 6 6 6 INCL_NON_REF_SPLICE YES_LDAS 0.1502 GT 1.6895 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-3133 chr2:241477905-241477982:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32344 HMGA2::TBK1 ENSG00000149948.14::ENSG00000183735.11 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA HMGA2 ENSG00000149948.14 protein_coding + + chr12:65824460-65966291:+ chr12:65838569:+ chr12:66218240-66360071:+ chr12:66232349:+ TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64466901:+ chr12:64845870-64895894:+ chr12:64860681:+ chr12:65906673,chr12:65906674 chr12:64465837,chr12:64465835 NA NA chr12:66300453,chr12:66300454 chr12:64859617,chr12:64859615 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UBA2_C|7-16|0.019^UBA2_C|19-55|7e-05^AT_hook|26-36|4.7e-07^AT_hook|46-58|0.00019^AT_hook|60-65|0.34^UBA2_C|62-77|0.054^AT_hook|74-83|3.1e-05 none ["HMGA2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.32Mb] 4 8 4 6 ONLY_REF_SPLICE YES_LDAS 0.1252 GT 1.8323 AG 1.8062 ENST00000537275.5 1-249 ENST00000679302.1 127-138 chr12|+|[0]65825271-65825381[2]|[0]65828001-65828087[2]|[0]65838519-65838569[2]<==>chr12|+|[0]64466901-64466912[2] atgagcgcacgcggtgagggcgcggggcagccgtccacttcagcccagggacaacctgccgccccagcgcctcagaagagaggacgcggccgccccaggaagcagcagcaagaaccaaccggtgagccctctcctaagagacccaggggaagacccaaaggcagcaaaaacaagagtccctctaaagcagctcaaaagaaagcagaagccactggagaaaaacggccaagaggcagacctaggaaatggTGGGTGGAATGA MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWWVE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE high mobility group AT-hook 2 (HMGIC) 1 lipoma, leiomyoma, pleomorphic salivary gland adenoma mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32346 ENSG00000229618::SCIN ENSG00000229618.3::ENSG00000006747.15 DMS114 SRR8616002 SRR8788981 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1908 FALSE NA FALSE NA ENSG00000229618 ENSG00000229618.3 lncRNA + + chr7:12726152-13751920:+ chr7:13217668:+ chr7:12765777-13791545:+ chr7:13257293:+ SCIN ENSG00000006747.15 protein_coding + + chr7:12570577-12660182:+ chr7:12622801:+ chr7:12610203-12699807:+ chr7:12662426:+ chr7:13306256,chr7:13306255 chr7:12622205,chr7:12622201 NA NA chr7:13345881,chr7:13345880 chr7:12661830,chr7:12661826 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 2 6 2 6 ONLY_REF_SPLICE YES_LDAS 0.1001 GT 1.8892 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32353 PPIL3::AGAP1 ENSG00000240344.10::ENSG00000157985.20 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1917 TRUE 3529 TRUE 1337 PPIL3 ENSG00000240344.10 protein_coding - - chr2:200870907-200889303:- chr2:200885698:- chr2:201735630-201754026:- chr2:201750421:- AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235883345:+ chr2:236402687-237040437:+ chr2:236791989:+ chr2:200885419,chr2:200885421 chr2:235830464,chr2:235830462 NA NA chr2:201750142,chr2:201750144 chr2:236739108,chr2:236739106 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pro_isomerase-PARTIAL|22-135~|6.3e-58 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:34.60Mb] 21 18 21 14 ONLY_REF_SPLICE YES_LDAS 0.385 GT 1.8892 AG 1.8892 ENST00000409264.6 1-135 ENST00000635100.2 1063-2661 chr2|-|[2]200885698-200885772[0]|[2]200888956-200889015[0]<==>chr2|+|[0]235883345-235883449[2]|[0]235908738-235908906[0]|[1]235930765-235930923[0]|[1]235968462-235968623[0]|[1]236014805-236014879[0]|[1]236036561-236036715[2]|[0]236040751-236040841[0]|[1]236049059-236049281[1]|[2]236120192-236120447[2]|[0]236123919-236124122[2] ctgcgattgcatttttcctgttttaacaacggctgtgctagacgaagtggtgaagcccaatctgtgacactgcatacagatgtaggtgatattaaaattgaagtcttctgtgagaggacacccaaaacatgtgagGGCATGCTGTTGAAGCGAAGTGGCAAATCGTTGAATAAAGAGTGGAAAAAGAAATATGTCACCCTGTGTGACAATGGCGTGCTGACCTATCATCCCAGTTTACATGATTACATGCAGAATGTTCATGGTAAGGAGATTGACCTTCTGAGAACCACTGTGAAAGTCCCAGGGAAGAGGCCACCCCGAGCCACGTCAGCCTGCGCACCCATCTCCAGCCCTAAAACCAATGGCCTATCCAAGGACATGAGCAGTTTACACATCTCACCCAATTCAGGGAATGTCACTAGTGCATCTGGGTCTCAGATGGCAAGCGGCATCAGCCTGGTCTCCTTCAACAGCCGACCCGACGGCATGCACCAGCGCTCCTACTCAGTCTCCAGTGCCGACCAGTGGAGTGAGGCTACGGTCATTGCAAACTCGGCCATCAGCAGTGACACAGGGCTGGGTGACTCCGTATGCTCCAGCCCCAGTATCTCCAGCACCACCAGCCCCAAGCTCGACCCGCCCCCCTCCCCTCACGCCAACAGAAAGAAGCACCGAAGGAAGAAAAGCACTAGCAACTTCAAAGCCGACGGCCTGTCCGGCACTGCTGAAGCCAAACGCAAAGCATGGAAACTAAACCGTGTTGGTAGCCTGCGAAATATATACAGCAGCAGCACCAACACTGAAGAACAAGAAGAAAATTTTGAGTTTATCATTGTGTCCCTCACTGGCCAAACATGGCACTTTGAAGCCACGACGTATGAGGAGCGGGACGCCTGGGTCCAAGCCATCGAGAGCCAGATCCTGGCCAGCCTGCAGTCGTGCGAGAGCAGCAAGAACAAGTCCCGGCTGACGAGCCAGAGCGAGGCCATGGCCCTGCAGTCGATCCGGAACATGCGCGGGAACTCCCACTGTGTGGACTGCGAGACCCAGAATCCCAACTGGGCCAGTTTGAACTTGGGAGCCCTCATGTGCATCGAATGCTCAGGGATCCACCGGAATCTTGGCACCCACCTTTCCCGAGTCCGATCTCTGGACCTGGATGACTGGCCAGTCGAGCTCATCAAGGTGATGTCATCCATCGGGAACGAGCTAGCCAACAGCGTCTGGGAAGAGAGCAGCCAGGGGCGGACGAAACCATCGGTAGACTCCACAAGGGAAGAGAAGGAACGGTGGATCCGTGCCAAGTACGAGCAGAAGCTCTTCCTGGCCCCGCTGCCCTGCACGGAGCTGTCCCTGGGCCAGCACCTGCTGCGGGCCACCGCCGACGAGGACCTGCGGACGGCCATCCTGCTGCTGGCACACGGCTCCCGGGACGAGGTGAACGAGACCTGCGGGGAGGGAGACGGCCGCACGGCGCTGCATCTGGCCTGCCGCAAGGGGAATGTGGTCCTGGCGCAGCTCCTGATCTGGTACGGAGTGGACGTCACGGCCCGAGATGCCCACGGGAACACAGCTCTGGCCTACGCCCGGCAGGCCTCCAGCCAGGAGTGCATCGACGTGCTGCTGCAGTACGGCTGCCCCGACGAGCGCTTCGTGCTCATGGCCACCCCTAACCTGTCCAGGAGAAACAATAACCGGAACAACAGCAGTGGGAGGGTGCCCACCATCATCTGA LRLHFSCFNNGCARRSGEAQSVTLHTDVGDIKIEVFCERTPKTCEGMLLKRSGKSLNKEWKKKYVTLCDNGVLTYHPSLHDYMQNVHGKEIDLLRTTVKVPGKRPPRATSACAPISSPKTNGLSKDMSSLHISPNSGNVTSASGSQMASGISLVSFNSRPDGMHQRSYSVSSADQWSEATVIANSAISSDTGLGDSVCSSPSISSTTSPKLDPPPSPHANRKKHRRKKSTSNFKADGLSGTAEAKRKAWKLNRVGSLRNIYSSSTNTEEQEENFEFIIVSLTGQTWHFEATTYEERDAWVQAIESQILASLQSCESSKNKSRLTSQSEAMALQSIRNMRGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPVELIKVMSSIGNELANSVWEESSQGRTKPSVDSTREEKERWIRAKYEQKLFLAPLPCTELSLGQHLLRATADEDLRTAILLLAHGSRDEVNETCGEGDGRTALHLACRKGNVVLAQLLIWYGVDVTARDAHGNTALAYARQASSQECIDVLLQYGCPDERFVLMATPNLSRRNNNRNNSSGRVPTII* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32354 ENSG00000287260::ZDHHC14 ENSG00000287260.2::ENSG00000175048.17 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1919 FALSE NA FALSE NA ENSG00000287260 ENSG00000287260.2 lncRNA + + chr6:154510770-154522307:+ chr6:154510962:+ chr6:154831904-154843441:+ chr6:154832096:+ ZDHHC14 ENSG00000175048.17 protein_coding + + chr6:157381133-157678157:+ chr6:157542585:+ chr6:157802165-158099189:+ chr6:157963617:+ chr6:154511992 chr6:157413686 NA NA chr6:154833126 chr6:157834718 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ZDHHC14:Oncogene"] 20 10 20 10 ONLY_REF_SPLICE YES_LDAS 0.33 GT 0.3534 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32366 PPIL3::AGAP1 ENSG00000240344.10::ENSG00000157985.20 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1918 TRUE 3529 TRUE 1337 PPIL3 ENSG00000240344.10 protein_coding - - chr2:200870907-200889303:- chr2:200885698:- chr2:201735630-201754026:- chr2:201750421:- AGAP1 ENSG00000157985.20 protein_coding + + chr2:235494043-236131793:+ chr2:235852686:+ chr2:236402687-237040437:+ chr2:236761330:+ chr2:200885419,chr2:200885421 chr2:235830464,chr2:235830462 NA NA chr2:201750142,chr2:201750144 chr2:236739108,chr2:236739106 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pro_isomerase-PARTIAL|22-135~|6.3e-58 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:34.60Mb] 4 20 4 6 ONLY_REF_SPLICE YES_LDAS 0.11 GT 1.8892 AG 1.5219 ENST00000409264.6 1-135 ENST00000409457.5 1051-1218 chr2|-|[2]200885698-200885772[0]|[2]200888956-200889015[0]<==>chr2|+|[0]235852686-235852853[2] ctgcgattgcatttttcctgttttaacaacggctgtgctagacgaagtggtgaagcccaatctgtgacactgcatacagatgtaggtgatattaaaattgaagtcttctgtgagaggacacccaaaacatgtgagGGCCTGCCCTTCTTTGTCCTTGCACTGACAGCCAGCACTTATCTCAGGCCTGCTGGAGCCCGTGCCCGTCAGTCCTCCCCCTGGCCAGGGCCGAGGGGTGGTCAGACCAGCCCGCATTGTGCTGAAGGCCCACAATCAGCCCAGCTGTCCGGGGCCATGATGAATTAG LRLHFSCFNNGCARRSGEAQSVTLHTDVGDIKIEVFCERTPKTCEGLPFFVLALTASTYLRPAGARARQSSPWPGPRGGQTSPHCAEGPQSAQLSGAMMN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32367 POU2F2::GSK3A ENSG00000028277.22::ENSG00000105723.13 DMS153 SRR8616003 SRR8639216 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42099527:- chr19:42590262-42700737:- chr19:42603679:- GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42226421:- chr19:42730377-42746777:- chr19:42730573:- chr19:42098263 chr19:42228001 NA NA chr19:42602415 chr19:42732153 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Peroxin-3|62-128|0.0015^ADNP_N|68-123|0.022^Kinesin_assoc|70-122|0.00066^ANAPC_CDC26|76-120|0.057^TAF4|77-132|0.00035^PAP1|79-148|0.00021^DUF755|87-123|2.3e-05^HTH_31|94-109|7.5^SR-25|94-123|0.0014^ANAPC_CDC26|155-170|0.02^DUF755|160-170|9^ANAPC_CDC26|256-272|0.5^Pou|258-320|2.4e-35^HTH_31|264-304|3e-05^ADNP_N|279-318|0.018 none ["POU2F2:Oncogene"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_REARRANGEMENT:-:[33601] 3 8 3 8 ONLY_REF_SPLICE YES_LDAS 0.121 GT 1.8892 AG 1.9329 ENST00000526831.2 1-678 ENST00000677025.1 94-290 chr19|-|[2]42099527-42099618[1]|[0]42099716-42099821[0]|[2]42116709-42117005[0]|[2]42117250-42117432[0]<==>chr19|-|[2]42226225-42226421[1] gtgggcattctctctggcctccacttaacattctggggtcccggaccctgcctctctcccccccagatcaaggctgaagaccccagtggcgattcagccccagcagcacccctgccccctcagccggcccagcctcatctgccccaggcccaactcatgttgacgggcagccagctagctgggctcacggcactgatgccagctcagcagcagctcctcctgcagcaagcccaggcccagctcctggccgccgccgtgcagcagtccagtgccgccgctgccgctaacgccgctgccgccgccgccgccgcctccgcctcctcctctacttcctcctcctcctcctcctctgcctcctcctcgacctcacagcccccagcctcctctggggggggtgacctgccaccaccacagcctgccagccagccccctgggaccccacagctcaccttgtcccaacccatccagctcacagcacaggacatacagcagctcctccagctccagcagctggtgcttgtgccaggccaccacctccagccacctgctcagttcctgctaccgcaggcccagcagagccagccaggcctgctaccgacaccaaatctattccagctacctcagcaaacccagggagctcttctgacctcccagccccgggccgggcttcccacacagCTGCGTCACACGAAGGCCGTGTCCAACTGCAAGAGCCCGCCTGCTTCACTGGCCCCCAGTGCAGCCTGGCACAGCTGCAGGGTGTCCTCAAGCGCCAGTGGCTGGGATGTCTCAATGATGGCGATGGTCTCCCCCAGCTCTGTGCACATGATAGTCTGTTGAGGCTCTGGAGGTGGGGGTGGGGCAGGAGATGGTGA VGILSGLHLTFWGPGPCLSPPQIKAEDPSGDSAPAAPLPPQPAQPHLPQAQLMLTGSQLAGLTALMPAQQQLLLQQAQAQLLAAAVQQSSAAAAANAAAAAAAASASSSTSSSSSSSASSSTSQPPASSGGGDLPPPQPASQPPGTPQLTLSQPIQLTAQDIQQLLQLQQLVLVPGHHLQPPAQFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQLRHTKAVSNCKSPPASLAPSAAWHSCRVSSSASGWDVSMMAMVSPSSVHMIVC*GSGGGGGAGDG FALSE TRUE hsa-mir-4323 chr19:42133445-42133513:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32371 ZFPM2::CASC11 ENSG00000169946.14::ENSG00000249375.8 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ZFPM2 ENSG00000169946.14 protein_coding + + chr8:104590733-105804539:+ chr8:105634357:+ chr8:105602961-106816767:+ chr8:106646585:+ CASC11 ENSG00000249375.8 lncRNA - - chr8:127686343-127738987:- chr8:127733959:- chr8:128698588-128751233:- chr8:128746205:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:21.88Mb] 11 2 11 2 ONLY_REF_SPLICE YES_LDAS 0.1572 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32372 PPT1::CTXND2 ENSG00000131238.18::ENSG00000283324.1 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- CTXND2 ENSG00000283324.1 protein_coding + + chr1:150887136-150913292:+ chr1:150912242:+ chr1:150859612-150885768:+ chr1:150884718:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 2 9 2 ONLY_REF_SPLICE YES_LDAS 0.133 GT 1.9329 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32373 SCMH1::FOXO6 ENSG00000010803.17::ENSG00000204060.8 DMS273 SRR8616004 SRR8788982 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 1923 FALSE NA FALSE NA SCMH1 ENSG00000010803.17 protein_coding - - chr1:41027202-41242306:- chr1:41242059:- chr1:41492874-41707978:- chr1:41707731:- FOXO6 ENSG00000204060.8 protein_coding + + chr1:41361922-41383590:+ chr1:41381616:+ chr1:41827594-41849262:+ chr1:41847288:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.12Mb] 9 3 9 2.25 ONLY_REF_SPLICE YES_LDAS 0.136 GT 1.4716 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32377 PTPRN2::CADM2 ENSG00000155093.20::ENSG00000175161.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1925 FALSE NA FALSE NA PTPRN2 ENSG00000155093.20 protein_coding - - chr7:157539056-158587823:- chr7:158587558:- chr7:157331750-158380515:- chr7:158380250:- CADM2 ENSG00000175161.14 protein_coding + + chr3:84958989-86074429:+ chr3:85883291:+ chr3:85008140-86123579:+ chr3:85932441:+ chr7:158562402,chr7:158562405 chr3:85853903,chr3:85853900 NA NA chr7:158355094,chr7:158355097 chr3:85903053,chr3:85903050 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RESP18|61-104|3e-09 BLTP1_C-PARTIAL|~218-249|0.062^Ig_3|229-302|6.2e-16^C1-set|231-271|0.43^Ig_2|233-308|4.8e-13^I-set|234-315|7.5e-15^ig|241-311|2.4e-12^V-set|241-255|1.4^Ig_5|242-303|0.00022^C2-set_2|243-272|0.12^Ig_4|246-304|0.0021^Ig_6|276-312|0.38^V-set|282-316|9.6e-05^Izumo-Ig|287-310|0.0026^MGC-24|317-402|3.2e-05^DcuA_DcuB|331-406|4.9e-05^BLTP1_C|331-370|0.0054^C2-set_2|336-352|7.6 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr3] 86 35 86 35 ONLY_REF_SPLICE YES_LDAS 1.2926 GT 1.5058 AG 1.8892 ENST00000389416.8 1-112 ENST00000405615.2 218-1314 chr7|-|[0]158587558-158587669[0]<==>chr3|+|[1]85883291-85883443[0]|[1]85886190-85886327[0]|[1]85912373-85912543[0]|[1]85935767-85935857[1]|[2]85961469-85961647[0]|[1]85979164-85979283[0]|[1]86065605-86065730[0]|[1]86066665-86066783[2] atggggccgccgctcccgctgctgctgctgctactgctgctgctgccgccacgcgtcctgcctgccgccccttcgtccgtcccccgcggccggcagctcccggggcgtctggCTTTAAGGGACAATAGGATCGAGCTGGTTCGCGCTTCCTGGCATGAATTGAGTATTAGTGTCAGTGATGTGTCTCTCTCTGATGAAGGACAGTACACCTGTTCTTTATTTACAATGCCTGTCAAAACTTCCAAGGCATATCTCACCGTTCTGGGTGTTCCTGAAAAGCCTCAGATTAGTGGATTCTCATCACCAGTTATGGAGGGTGACTTGATGCAGCTGACTTGCAAAACATCTGGTAGTAAACCTGCAGCTGATATAAGATGGTTCAAAAATGACAAAGAGATTAAAGATGTAAAATATTTAAAAGAAGAGGATGCAAATCGCAAGACATTCACTGTCAGCAGCACACTGGACTTCCGAGTGGACCGGAGTGATGATGGAGTGGCGGTCATCTGCAGAGTAGATCACGAATCCCTCAATGCCACCCCTCAGGTAGCCATGCAGGTGCTAGAAATACACTATACACCATCAGTTAAGATTATACCATCGACTCCTTTTCCACAAGAAGGACAGCCTTTAATTTTGACTTGTGAATCCAAAGGAAAACCACTGCCAGAACCTGTTTTGTGGACAAAGGATGGCGGAGAATTACCAGATCCTGACCGAATGGTTGTGAGTGGTAGGGAGCTAAACATTCTTTTCCTGAACAAAACGGATAATGGTACATATCGATGTGAAGCCACAAACACCATTGGCCAAAGCAGTGCGGAATATGTTCTCATTGTGCATGATGTTCCCAACACTTTGCTTCCCACTACTATCATCCCCTCCCTTACCACTGCAACAGTCACAACCACTGTAGCCATAACAACCAGCCCAACCACATCTGCAACAACCAGCAGCATCAGAGATCCTAATGCTTTGGCTGGCCAGAATGGCCCTGACCATGCTCTCATAGGAGGAATAGTGGCTGTAGTTGTATTTGTCACGCTGTGTTCTATCTTTCTGCTTGGTCGATATCTGGCAAGGCATAAAGGAACGTATTTAACAAATGAAGCTAAAGGAGCTGAAGATGCACCAGATGCTGATACAGCCATTATCAATGCTGAAGGCAGCCAAGTCAATGCTGAAGAGAAAAAAGAGTATTTCATTTAA MGPPLPLLLLLLLLLPPRVLPAAPSSVPRGRQLPGRLALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGDLMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVDHESLNATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQPLILTCESKGKPLPEPVLWTKDGGELPDPDRMVVSGRELNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHDVPNTLLPTTIIPSLTTATVTTTVAITTSPTTSATTSSIRDPNALAGQNGPDHALIGGIVAVVVFVTLCSIFLLGRYLARHKGTYLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32378 PDAP1::SEL1L2 ENSG00000106244.13::ENSG00000101251.13 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1924 FALSE NA FALSE NA PDAP1 ENSG00000106244.13 protein_coding - - chr7:99392048-99408597:- chr7:99403398:- chr7:98989671-99006220:- chr7:99001021:- SEL1L2 ENSG00000101251.13 protein_coding - - chr20:13849247-13996443:- chr20:13888512:- chr20:13829893-13977089:- chr20:13869158:- chr7:99400333,chr7:99400336 chr20:13888922,chr20:13888922 NA NA chr7:98997956,chr7:98997959 chr20:13869568,chr20:13869568 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PP28|27-41|0.45^RPN2_C|27-99|3.6e-06^PP28|32-39|3^PP28|85-162|5.2e-35^DUF5486|106-121|0.27^RPN2_C|132-162|2^DUF5486|146-179|8.8e-05 Sel1|553-584|1.4e-06^TPR_16|569-625|9.8e-05^TPR_14|570-596|1^Sel1|588-620|5.5e-13^TPR_14|607-626|0.1 ["Klijn_CellLines"];INTERCHROMOSOMAL[chr7--chr20] 76 81 76 77.9 ONLY_REF_SPLICE YES_LDAS 1.6439 GT 1.8892 AG 1.7465 ENST00000350498.8 1-213 ENST00000284951.10 550-2067 chr7|-|[2]99403398-99403505[0]|[2]99404862-99404953[1]|[0]99408536-99408548[0]<==>chr20|-|[2]13849485-13849604[0]|[2]13850191-13850319[0]|[2]13859262-13859434[1]|[0]13865167-13865241[1]|[0]13865349-13865514[0]|[2]13866702-13866850[1]|[0]13869503-13869590[0]|[2]13870141-13870203[0]|[2]13876038-13876115[0]|[2]13877520-13877588[0]|[2]13885347-13885403[0]|[2]13886288-13886442[1]|[0]13887769-13887850[0]|[2]13887942-13888001[0]|[2]13888459-13888512[0] atgcctaaaggaggaagaaagggaggccacaaaggccgggcgaggcagtatacaagccctgaggagatcgacgcgcagctgcaggctgagaagcagaaggccagggaagaagaggagcaaaaagaaggtggagatggggctgcaggtgaccccaaaaaggagaagaaatctctagactcagatgagagtgaggatgaagaagatgactaccagGCATTAGGATTTTTGTCTTCTTATGGAATAGGAATGGAATATGATCAAGCTAAGGCACTGATATATTACACCTTTGGAAGTGCTGGAGGAAACATGATGTCCCAGATGATTTTGGGGTACAGATATTTGTCGGGAATCAATGTTCTACAGAATTGTGAAGTTGCCCTAAGTTATTACAAGAAAGTGGCAGATTATATTGCTGACACATTTGAAAAAAGTGAAGGTGTTCCAGTGGAAAAAGTGAGACTAACGGAAAGACCTGAAAATCTGAGTTCTAACAGTGAGATTTTGGATTGGGACATATACCAATACTATAAATTTTTGGCAGAAAGAGGAGATGTTCAGATACAAGTCTCTCTTGGACAATTACATCTAATTGGCAGGAAAGGTCTAGATCAGGATTACTACAAAGCATTACACTACTTCTTAAAGGCAGCAAAGGCCGGGAGTGCAAATGCCATGGCATTTATAGGAAAGATGTATTTAGAGGGGAATGCTGCCGTGCCGCAAAATAACGCTACTGCCTTCAAGTACTTTTCCATGGCAGCCAGTAAGGGCAATGCAATCGGCCTTCATGGGCTTGGTCTTCTTTACTTTCATGGAAAAGGAGTTCCCCTGAATTATGCCGAAGCACTTAAATACTTTCAGAAAGCTGCGGAAAAAGGGTGGCCCGACGCACAGTTCCAGTTAGGCTTCATGTACTACTCTGGCTCTGGAATATGGAAGGATTATAAACTTGCCTTCAAATATTTTTACCTGGCATCTCAGAGTGGGCAGCCCCTTGCCATTTATTATCTGGCCAAGATGTATGCAACAGGAACAGGAGTAGTAAGATCATGCAGAACTGCTGTGGAGCTTTATAAAGGTGTCTGTGAACTAGGCCACTGGGCTGAGAAATTCCTGACAGCTTACTTTGCCTATAAGGATGGTGATATAGATTCTTCTCTTGTTCAGTATGCACTGCTTGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTAAAAAGGCTAACATTCTTGAAAAAGAGAAGATGTATCCAATGGCGCTTCTCCTATGGAATCGAGCTGCCATTCAAGGCAATGCATTTGCTAGAGTAAAAATTGGAGATTACCATTACTATGGCTATGGGACTAAGAAAGACTATCAAACAGCAGCCACACACTACAGCATTGCAGCCAACAAATACCACAACGCGCAAGCCATGTTCAATCTGGCTTATATGTATGAACACGGCTTAGGCATCACAAAGGACATTCACTTGGCCAGAAGATTGTACGACATGGCTGCTCAAACGAGTCCAGATGCCCACATACCTGTGCTCTTTGCCGTCATGAAACTGGAAACTACGCATTTGCTCCGGGATATCCTGTTTTTTAATTTCACAACGAGATGGAACTGGCTGAAACTGGACAACACCATTGGACCACACTGGGACTTATTTGTGATTGGCCTCATTGTTCCTGGGCTGATTTTGTTGCTTAGAAATCACCATGGGTAG MPKGGRKGGHKGRARQYTSPEEIDAQLQAEKQKAREEEEQKEGGDGAAGDPKKEKKSLDSDESEDEEDDYQALGFLSSYGIGMEYDQAKALIYYTFGSAGGNMMSQMILGYRYLSGINVLQNCEVALSYYKKVADYIADTFEKSEGVPVEKVRLTERPENLSSNSEILDWDIYQYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDYKLAFKYFYLASQSGQPLAIYYLAKMYATGTGVVRSCRTAVELYKGVCELGHWAEKFLTAYFAYKDGDIDSSLVQYALLAEMGYEVAQSNSAFILESKKANILEKEKMYPMALLLWNRAAIQGNAFARVKIGDYHYYGYGTKKDYQTAATHYSIAANKYHNAQAMFNLAYMYEHGLGITKDIHLARRLYDMAAQTSPDAHIPVLFAVMKLETTHLLRDILFFNFTTRWNWLKLDNTIGPHWDLFVIGLIVPGLILLLRNHHG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32382 MEMO1::KCNB1 ENSG00000162959.14::ENSG00000158445.10 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1932 FALSE NA FALSE NA MEMO1 ENSG00000162959.14 protein_coding - - chr2:31865060-32011230:- chr2:32010187:- chr2:32090129-32236299:- chr2:32235256:- KCNB1 ENSG00000158445.10 protein_coding - - chr20:49293394-49484297:- chr20:49374992:- chr20:47909931-48100834:- chr20:47991529:- chr2:31982622,chr2:31982626 chr20:49431701,chr20:49431702 NA NA chr2:32207691,chr2:32207695 chr20:48048238,chr20:48048239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Memo|9-48|2.2e-06^Memo-PARTIAL|48-61~|2.4e-61 Kv2channel-PARTIAL|~568-613|5.4e-50^Kv2channel|649-680|7.8e-11 ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr20] 37 9 37 9 ONLY_REF_SPLICE YES_LDAS 0.4913 GT 1.9329 AG 1.8062 ENST00000426310.6 1-61 ENST00000635465.1 568-2577 chr2|-|[0]32010187-32010247[0]<==>chr20|-|[2]49372983-49374992[0] atgtccaaccgagtggtctgccgagaagccagtcacgccgggagctggtacacagcctcagATCCTTGCCATAATTTCCATCATGTTCATCGTCCTCTCCACCATTGCCCTGTCCCTCAACACGCTGCCTGAGCTACAGAGCCTCGATGAGTTCGGCCAGTCCACAGACAACCCCCAGCTGGCCCACGTGGAGGCCGTGTGCATCGCATGGTTCACCATGGAGTACCTGCTGAGGTTCCTCTCCTCGCCCAAGAAGTGGAAGTTCTTCAAGGGCCCACTCAATGCCATTGACTTGTTGGCCATTCTGCCATACTATGTCACCATTTTCCTCACCGAATCCAACAAGAGCGTGCTGCAATTCCAGAATGTCCGCCGCGTGGTCCAGATCTTCCGCATCATGCGAATTCTCCGCATCCTTAAGCTTGCACGCCACTCCACTGGCCTCCAGTCTCTGGGCTTCACTTTGCGGAGGAGCTACAATGAGTTGGGCTTGCTCATCCTCTTCCTTGCCATGGGCATTATGATCTTCTCCAGCCTTGTCTTCTTTGCTGAGAAGGATGAGGACGACACCAAGTTCAAAAGCATCCCAGCCTCTTTCTGGTGGGCCACCATCACCATGACTACTGTTGGGTATGGAGACATCTACCCCAAGACTCTCCTGGGGAAAATTGTTGGGGGACTCTGCTGCATTGCAGGAGTCCTGGTGATTGCTCTTCCCATCCCCATCATCGTCAATAACTTCTCTGAGTTCTATAAGGAGCAGAAGAGACAGGAGAAAGCAATCAAACGGCGAGAGGCTCTGGAGAGAGCCAAGAGGAATGGCAGCATCGTATCCATGAACATGAAGGATGCTTTTGCCCGGAGCATTGAGATGATGGACATTGTGGTTGAGAAAAATGGGGAGAATATGGGTAAGAAAGACAAAGTACAAGATAACCACTTGTCTCCTAACAAATGGAAATGGACAAAGAGGACACTGTCTGAAACCAGCTCAAGTAAGTCCTTTGAAACCAAGGAACAGGGATCCCCTGAAAAAGCCAGATCGTCTTCTAGTCCTCAGCACCTGAACGTTCAGCAGTTGGAAGACATGTACAATAAGATGGCCAAGACCCAATCCCAACCCATCCTCAATACCAAGGAGTCAGCAGCACAGAGCAAACCAAAGGAAGAACTTGAAATGGAGAGTATCCCCAGCCCCGTAGCCCCTCTGCCCACTCGCACAGAAGGGGTCATTGACATGCGAAGTATGTCAAGCATTGATAGTTTCATTAGCTGTGCCACAGACTTCCCTGAGGCCACCAGATTCTCCCACAGCCCTTTGACATCACTCCCCAGCAAGACTGGGGGCAGCACAGCCCCAGAAGTGGGCTGGCGGGGAGCTCTGGGTGCCAGTGGTGGTAGGTTTGTGGAGGCCAACCCCAGCCCTGATGCCAGCCAGCACTCTAGTTTCTTCATCGAGAGCCCCAAGAGTTCCATGAAAACTAACAACCCTTTGAAGCTCCGAGCACTTAAAGTCAACTTCATGGAGGGTGACCCCAGTCCACTCCTCCCCGTTCTAGGGATGTACCATGACCCTCTCAGGAACCGGGGGAGTGCTGCGGCTGCTGTCGCTGGACTGGAGTGTGCCACGCTTTTGGACAAGGCTGTGCTGAGCCCAGAGTCCTCCATCTACACCACAGCAAGTGCTAAGACACCCCCCCGGTCTCCTGAGAAACACACAGCAATAGCGTTCAACTTTGAGGCGGGTGTCCACCAGTACATTGACGCAGACACAGATGATGAGGGACAGCTGCTCTACAGTGTGGACTCCAGCCCCCCCAAAAGCCTCCCTGGGAGCACCAGTCCGAAGTTCAGCACGGGGACAAGATCGGAGAAAAACCACTTTGAAAGCTCCCCTTTACCCACCTCCCCTAAGTTCTTAAGGCAGAACTGTATTTACTCCACAGAAGCATTGACTGGAAAAGGCCCCAGTGGTCAGGAAAAGTGCAAACTTGAGAACCACATCTCCCCTGACGTCCGTGTGTTGCCAGGGGGAGGAGCCCATGGAAGCACACGAGATCAGAGCATCTGA MSNRVVCREASHAGSWYTASDPCHNFHHVHRPLHHCPVPQHAA*ATEPR*VRPVHRQPPAGPRGGRVHRMVHHGVPAEVPLLAQEVEVLQGPTQCH*LVGHSAILCHHFPHRIQQERAAIPECPPRGPDLPHHANSPHP*ACTPLHWPPVSGLHFAEELQ*VGLAHPLPCHGHYDLLQPCLLC*EG*GRHQVQKHPSLFLVGHHHHDYCWVWRHLPQDSPGENCWGTLLHCRSPGDCSSHPHHRQ*LL*VL*GAEETGESNQTARGSGESQEEWQHRIHEHEGCFCPEH*DDGHCG*EKWGEYG*ERQSTR*PLVS*QMEMDKEDTV*NQLK*VL*NQGTGIP*KSQIVF*SSAPERSAVGRHVQ*DGQDPIPTHPQYQGVSSTEQTKGRT*NGEYPQPRSPSAHSHRRGH*HAKYVKH**FH*LCHRLP*GHQILPQPFDITPQQDWGQHSPRSGLAGSSGCQWW*VCGGQPQP*CQPAL*FLHREPQEFHEN*QPFEAPST*SQLHGG*PQSTPPRSRDVP*PSQEPGECCGCCRWTGVCHAFGQGCAEPRVLHLHHSKC*DTPPVS*ETHSNSVQL*GGCPPVH*RRHR**GTAALQCGLQPPQKPPWEHQSEVQHGDKIGEKPL*KLPFTHLP*VLKAELYLLHRSIDWKRPQWSGKVQT*EPHLP*RPCVARGRSPWKHTRSEHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32383 RPN2::ENTPD4 ENSG00000118705.18::ENSG00000197217.13 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1931 FALSE NA FALSE NA RPN2 ENSG00000118705.18 protein_coding + + chr20:37178410-37241619:+ chr20:37225802:+ chr20:35806813-35870022:+ chr20:35854205:+ ENTPD4 ENSG00000197217.13 protein_coding - - chr8:23385783-23457695:- chr8:23437258:- chr8:23243296-23315208:- chr8:23294771:- chr20:37228706,chr20:37228699,chr20:37228695 chr8:23438567,chr8:23438567,chr8:23438578 NA NA chr20:35857109,chr20:35857102,chr20:35857098 chr8:23296080,chr8:23296080,chr8:23296091 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ribophorin_II|10-626|2.5e-225^HSM3_N|183-264|1.7e-05^HSM3_N|300-340|0.16^DUF5859|426-455|3.5e-05 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr8] 33 18 33 18 ONLY_REF_SPLICE YES_LDAS 0.5448 GT 1.6729 AG 1.9899 ENST00000705448.1 1-1299 ENST00000417069.6 1026-1827 chr20|+|[0]37179357-37179369[0]|[1]37184180-37184373[2]|[0]37198397-37198492[2]|[0]37199050-37199225[1]|[2]37203885-37203960[2]|[0]37204767-37204901[2]|[0]37207273-37207449[2]|[0]37210047-37210165[1]|[2]37213760-37213865[2]|[0]37223878-37223969[1]|[2]37225688-37225802[2]<==>chr8|-|[2]23432926-23433154[2]|[1]23434317-23434478[2]|[1]23435392-23435477[0]|[2]23436934-23437258[2] atggcgccgccgggttcaagcactgtcttcctgttggccctgacaatcatagccagcacctgggctctgacgcccactcactacctcaccaagcatgacgtggagagactaaaagcctcgctggatcgccctttcacaaatttggaatctgccttctactccatcgtgggactcagcagccttggtgctcaggtgccagatgcaaagaaagcatgtacctacatcagatctaaccttgatcccagcaatgtggattccctcttctacgctgcccaggccagccaggccctctcaggatgtgagatctctatttcaaatgagaccaaagatctgcttctggcagctgtcagtgaggactcatctgttacccagatctaccatgcagttgcagctctaagtggctttggccttcccttggcatcccaagaagcactcagtgcccttactgctcgtctcagcaaggaggagactgtgctggcaacagtccaggctctgcagacagcatcccacctgtcccagcaggctgacctgaggagcatcgtggaggagattgaggaccttgttgctcgcctggatgaactcgggggcgtgtatctccagtttgaagaaggactggaaacaacagcgttatttgtggctgccacctacaagctcatggatcatgtggggactgagccatccattaaggaggatcaggtcatccagctgatgaacgcgatcttcagcaagaagaactttgagtccctctccgaagccttcagcgtggcctctgcagctgctgtgctctcgcataatcgctaccacgtgccagttgtggttgtgcctgagggctctgcttccgacactcatgaacaggctatcttgcggttgcaagtcaccaatgttctgtctcagcctctgactcaggccactgttaaactagaacatgctaaatctgttgcttccagagccactgtcctccagaagacatccttcacccctgtaggggatgtttttgaactaaatttcatgaacgtcaaattttccagtggttattatgacttccttgtcgaagttgaaggtgacaaccggtatattgcaaataccgtagagctcagagtcaagatctccactgaagttggcatcacaaatgttgatctttccaccgtggataaggatcagagcattgcacccaaaactacccgggtgacatacccagccaaagccaagggcacattcatcgcagacagccaccagaacttcgccttgttcttccagctggtagatgtgaacactggtgctgaactcactcctcaccagGCTCCTGGGTAAACAGACTGGTCTGACTCCTGATATGCCGTACTTGGACCCCTGCCTACCCCTAGACATTAAAGATGAAATCCAGCAAAATGGACAAACCATATACCTACGAGGGACTGGAGACTTTGACCTGTGTCGAGAGACTATCCAGCCTTTCATGAATAAAACAAACGAGACCCAGACTTCCCTCAATGGGGTCTACCAGCCCCCAATTCACTTCCAGAACAGTGAATTCTATGGCTTCTCCGAATTCTACTACTGCACCGAGGATGTGTTACGAATGGGGGGAGACTACAATGCTGCTAAATTTACTAAAGCTGCAAAGGATTATTGTGCAACAAAGTGGTCCATTTTGCGGGAACGCTTTGACCGAGGACTGTACGCCTCTCATGCTGACCTCCACAGGCTTAAGTATCAGTGCTTCAAATCGGCCTGGATGTTTGAGGTGTTTCATAGGGGCTTTTCGTTTCCTGTCAACTATAAAAGCTTAAAGACTGCCTTGCAAGTTTACGACAAGGAGGTTCAGTGGACCCTTGGAGCCATCCTCTACAGGACCCGCTTTCTACCATTAAGAGACATCCAGCAGGAGGCCTTCCGAGCCAGTCACACCCACTGGCGGGGCGTTTCCTTTGTCTACAACCACTACCTGTTCTCTGGCTGCTTCCTGGTGGTGCTGCTGGCCATCCTGCTGTACCTGCTGCGGCTGCGGCGCATCCACAGGCGCACTCCCCGGAGCAGCTCGGCCGCCGCCCTCTGGATGGAGGAGGGCCTTCCCGCCCAGAATGCCCCGGGGACCTTGTGA MAPPGSSTVFLLALTIIASTWALTPTHYLTKHDVERLKASLDRPFTNLESAFYSIVGLSSLGAQVPDAKKACTYIRSNLDPSNVDSLFYAAQASQALSGCEISISNETKDLLLAAVSEDSSVTQIYHAVAALSGFGLPLASQEALSALTARLSKEETVLATVQALQTASHLSQQADLRSIVEEIEDLVARLDELGGVYLQFEEGLETTALFVAATYKLMDHVGTEPSIKEDQVIQLMNAIFSKKNFESLSEAFSVASAAAVLSHNRYHVPVVVVPEGSASDTHEQAILRLQVTNVLSQPLTQATVKLEHAKSVASRATVLQKTSFTPVGDVFELNFMNVKFSSGYYDFLVEVEGDNRYIANTVELRVKISTEVGITNVDLSTVDKDQSIAPKTTRVTYPAKAKGTFIADSHQNFALFFQLVDVNTGAELTPHQAPG*TDWSDS*YAVLGPLPTPRH*R*NPAKWTNHIPTRDWRL*PVSRDYPAFHE*NKRDPDFPQWGLPAPNSLPEQ*ILWLLRILLLHRGCVTNGGRLQCC*IY*SCKGLLCNKVVHFAGTL*PRTVRLSC*PPQA*VSVLQIGLDV*GVS*GLFVSCQL*KLKDCLASLRQGGSVDPWSHPLQDPLSTIKRHPAGGLPSQSHPLAGRFLCLQPLPVLWLLPGGAAGHPAVPAAAAAHPQAHSPEQLGRRPLDGGGPSRPECPGDLV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32384 R3HDM2::PPP6R3 ENSG00000179912.21::ENSG00000110075.15 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1928 FALSE NA FALSE NA R3HDM2 ENSG00000179912.21 protein_coding - - chr12:57253762-57431043:- chr12:57395749:- chr12:57647545-57824826:- chr12:57789532:- PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68569748:+ chr11:68228199-68382802:+ chr11:68337216:+ chr12:57353496,chr12:57353492 chr11:68567683,chr11:68567683 NA NA chr12:57747279,chr12:57747275 chr11:68335151,chr11:68335151 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr11] 31 7 31 7 ONLY_REF_SPLICE YES_LDAS 0.4059 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32386 RPH3AL::TENM1 ENSG00000181031.16::ENSG00000009694.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1933 TRUE 3553 TRUE 1345 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:219623:- chr17:62180-236045:- chr17:69414:- TENM1 ENSG00000009694.14 protein_coding - - chrX:124375903-125204312:- chrX:124565560:- chrX:123509753-124338161:- chrX:123699410:- chr17:213070,chr17:213073 chrX:124569565,chrX:124569565 NA NA chr17:62861,chr17:62864 chrX:123703415,chrX:123703415 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HscB_4_cys|9-19|2.5^zf-B_box|11-17|5.9^PHD|11-16|1.1^FYVE_2|46-158|1.5e-40^IBR|92-130|4.6e-06^FYVE|92-144|5.5e-05^C1_1|93-123|0.0006^HscB_4_cys|94-116|0.00076^zf-B_box|95-99|7.1^PHD|95-141|0.00015^FYVE_CARP1-2|95-98|5.3^zf-B_box|110-124|2.6e-05^zf-piccolo|111-146|1.9e-07^FYVE_CARP1-2|111-142|7.6e-05^C1_1|118-142|0.33^HscB_4_cys|120-135|0.14^zf-B_box|137-143|0.84 RHS_repeat|2115-2123|10^RHS_repeat|2142-2169|4e-06^RHS_repeat|2184-2193|7.7^RHS_repeat|2217-2253|1e-06^RHS_repeat|2285-2300|0.71^RHS|2302-2333|0.00011^Tox-GHH|2630-2707|1.4e-31 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chrX] 23 14 23 8.7 ONLY_REF_SPLICE YES_LDAS 0.3386 GT 1.8892 AG 1.9656 ENST00000331302.12 1-727 ENST00000422452.3 2024-8145 chr17|-|[0]219623-219736[1]|[0]247111-247285[0]|[2]281768-281854[0]|[2]319420-319549[2]|[1]321272-321415[2]|[1]327467-327543[0]<==>chrX|-|[2]124380536-124381294[0]|[2]124382670-124382812[1]|[0]124383634-124384854[1]|[0]124385677-124386064[0]|[2]124392052-124392348[0]|[2]124405031-124405266[1]|[0]124406317-124406489[2]|[1]124420311-124420821[1]|[0]124422272-124422638[0]|[2]124453337-124453491[1]|[0]124481732-124481964[2]|[1]124487209-124487229[2]|[1]124497016-124497265[1]|[0]124503560-124503703[1]|[0]124520517-124520784[0]|[2]124523364-124523625[2]|[1]124529864-124529983[2]|[1]124546874-124547090[1]|[0]124561671-124561817[1]|[0]124563749-124563772[1]|[0]124565375-124565560[1] atggccgacaccatcttcggcagcgggaatgatcagtgggtttgccccaatgaccggcagcttgcccttcgagccaagctgcagacgggctggtccgtgcacacctaccagacggagaagcagaggaggaagcagcacctcagcccggcggaggtggaggccatcctgcaggtcatccagagggcagagcggctcgacgtcctggagcagcagagaatcgggcggctggtggagcggctggagaccatgaggcggaatgtgatggggaacggcctgtcccagtgtctgctctgcggggaggtgctgggcttcctgggcagctcgtcggtgttctgcaaagactgcaggaagaaagtctgcaccaaatgtgggatcgaggcctcccctggccagaagcggcccctgtggctgtgtaagatctgcagtgagcaaagagaggtctggaagaggtcgggggcctggttctacaaagggctccccaagtatatcttgcccctgaagacccctggccgagctgatgacccccacttccgacctttgcccacggaaccggcagagcgagagcccagaagctctgagaccagccgcatctacacgtgggcccgaggaagagtggtttccagtgacagtgacagtgactcggatcttagctcctccagcctagaggacagactcccatccactggggtcagggaccggaaaggcgacaaaccctggaaggagtcagAGCTGTGTACCATGGAGTGTGGTAGCCATGGAGTCTGCTCAAGAGGAATTTGCCAGTGTGAAGAAGGCTGGGTAGGACCAACATGTGAGGAACGCTCCTGTCATTCTCATTGTACTGAGCATGGCCAATGCAAAGATGGAAAATGTGAGTGTAGCCCTGGATGGGAGGGCGACCACTGCACAATTGCTCACTACTTAGATGCTGTCCGAGATGGCTGCCCAGGGCTCTGCTTTGGAAATGGACGATGTACCCTGGATCAAAATGGTTGGCACTGTGTGTGTCAGGTGGGTTGGAGTGGGACAGGCTGCAATGTTGTCATGGAAATGCTTTGTGGAGATAACTTGGACAATGATGGAGATGGTTTAACCGACTGTGTGGATCCTGACTGTTGTCAACAAAGCAACTGTTATATAAGTCCTCTCTGCCAGGGCTCACCAGATCCTCTTGACCTCATTCAGCAAAGCCAAACTCTCTTCTCTCAGCACACTTCAAGACTTTTTTATGATCGAATCAAATTCCTCATTGGCAAGGACAGTACTCATGTCATTCCTCCTGAGGTGTCATTTGACAGCAGGCGTGCCTGTGTGATTCGAGGCCAAGTGGTGGCCATAGATGGAACTCCTCTAGTGGGAGTGAATGTCAGTTTCTTGCACCACAGTGATTATGGGTTTACCATCAGCCGGCAAGATGGAAGCTTTGACCTCGTGGCCATCGGTGGCATCTCTGTCATCTTAATCTTCGACCGATCCCCTTTCCTGCCTGAGAAGAGAACACTCTGGTTGCCTTGGAATCAGTTTATTGTGGTAGAGAAAGTCACCATGCAGAGAGTTGTATCAGACCCGCCATCCTGCGATATCTCCAACTTTATCAGCCCAAACCCTATTGTGCTTCCTTCACCGCTCACATCATTTGGAGGGTCCTGTCCAGAGAGGGGAACTATTGTTCCTGAGCTGCAGGTTGTACAGGAGGAAATTCCCATTCCCTCCAGCTTTGTGAGGCTGAGTTACCTGAGCAGCCGCACCCCTGGGTATAAAACCCTGCTACGGATCCTTCTGACACATTCAACGATTCCTGTAGGCATGATAAAAGTACACCTCACAGTAGCTGTGGAAGGGCGACTCACACAGAAGTGGTTTCCCGCCGCAATTAATCTTGTCTACACATTTGCTTGGAACAAGACCGACATCTATGGACAGAAGGTTTGGGGCCTGGCAGAGGCTTTGGTATCTGTGGGATATGAATATGAAACGTGCCCTGACTTTATTCTCTGGGAGCAAAGGACAGTCGTTTTACAAGGTTTTGAGATGGATGCTTCTAACCTAGGAGGCTGGTCTTTGAATAAGCATCACATTTTGAATCCTCAAAGTGGAATCATACATAAAGGGAATGGAGAAAATATGTTCATTTCCCAGCAGCCCCCAGTCATATCAACCATAATGGGTAATGGACACCAAAGGAGTGTAGCCTGCACCAACTGCAATGGCCCAGCCCACAACAACAAACTCTTTGCTCCTGTCGCCTTAGCTTCTGGCCCTGATGGCAGTGTGTATGTTGGCGACTTCAATTTTGTAAGGAGAATATTTCCCTCGGGAAACTCCGTTAGTATTTTGGAATTAAGAAACAGAGATACCAGACATAGCACAAGTCCTGCTCACAAATACTATCTGGCTATGGACCCTGTGTCTGAATCACTCTATCTATCAGACACCAATACTCGCAAAGTCTACAAGTTGAAATCTCTTGTGGAGACGAAAGATCTGTCCAAGAATTTTGAAGTGGTGGCAGGAACTGGTGATCAGTGCCTTCCCTTTGACCAGAGTCATTGTGGAGATGGTGGGAGAGCATCGGAAGCTTCACTGAATAGCCCTCGAGGCATCACAGTTGATAGGCATGGATTTATTTACTTTGTGGATGGGACTATGATTCGCAAAATTGATGAGAATGCTGTGATCACAACTGTAATCGGCTCAAATGGTCTGACTTCCACACAACCACTGAGCTGTGACTCAGGAATGGACATCACTCAGGTGCGATTAGAGTGGCCAACAGACCTTGCAGTAAATCCTATGGACAATTCATTGTATGTCTTGGATAACAACATTGTGCTGCAAATTTCTGAGAACAGGCGTGTTCGGATCATCGCAGGACGCCCCATTCACTGCCAGGTGCCAGGCATCGATCATTTCCTGGTCAGCAAGGTAGCAATTCACTCCACTCTAGAGTCAGCGAGGGCCATCAGTGTCTCCCACAGCGGGCTGCTCTTCATAGCTGAAACAGACGAGAGGAAAGTAAACCGCATTCAGCAAGTAACCACCAATGGGGAGATCTACATCATCGCTGGTGCCCCCACTGACTGTGACTGCAAAATTGATCCAAACTGTGACTGTTTTTCAGGTGATGGTGGCTATGCCAAAGATGCAAAGATGAAAGCCCCTTCCTCCTTAGCAGTGTCGCCTGATGGAACCCTCTATGTGGCAGACCTCGGAAATGTTCGAATTCGTACCATCAGCAGGAACCAAGCCCACCTGAATGACATGAACATTTATGAGATTGCTTCACCCGCTGATCAGGAACTGTACCAGTTCACTGTAAATGGAACCCACCTACACACCCTGAACTTGATAACAAGGGACTATGTTTATAACTTCACCTACAATTCTGAAGGTGACTTGGGCGCGATTACCAGCAGCAATGGCAATTCAGTGCACATTCGCCGTGATGCAGGCGGAATGCCGCTATGGCTTGTGGTGCCTGGCGGACAAGTATACTGGCTGACTATAAGCAGCAATGGAGTCCTGAAAAGAGTGTCAGCCCAAGGCTATAATCTGGCCTTAATGACCTATCCAGGAAACACAGGGCTTCTGGCTACCAAAAGTAACGAAAATGGATGGACAACCGTTTATGAGTATGACCCCGAGGGACACCTGACCAATGCAACGTTTCCCACTGGAGAGGTCAGCAGCTTCCACAGTGACCTGGAGAAGCTGACAAAAGTGGAGCTAGATACTTCCAACCGTGAAAATGTCCTCATGTCAACCAACTTGACGGCAACTAGTACCATATATATTTTAAAACAAGAAAATACTCAAAGTACCTATCGGGTGAATCCAGATGGTTCCCTGCGTGTCACTTTTGCCAGCGGGATGGAGATCGGCCTCAGCTCAGAGCCCCACATCCTGGCAGGGGCAGTCAACCCTACCCTGGGCAAATGCAACATCTCATTGCCCGGAGAGCACAATGCAAACCTCATCGAGTGGCGGCAGAGGAAGGAGCAAAACAAAGGCAATGTTTCGGCTTTTGAAAGGAGGCTGAGGGCCCACAACAGAAACCTACTCTCCATAGATTTTGATCATATAACCCGCACAGGAAAGATCTATGATGACCATCGAAAATTCACCCTTCGAATTCTTTATGACCAGACTGGGCGACCCATTCTGTGGTCTCCTGTAAGCAGATATAATGAAGTGAACATCACATATTCACCTTCGGGATTGGTGACGTTTATTCAAAGAGGAACGTGGAATGAAAAAATGGAATATGACCAGAGTGGGAAAATTATTTCAAGAACTTGGGCTGATGGGAAAATTTGGAGCTATACCTACTTAGAAAAATCTGTGATGCTTCTCCTACACAGCCAGCGGCGTTACATCTTTGAGTATGACCAACCAGATTGTCTGCTCTCAGTCACCATGCCTAGCATGGTGCGTCACAGCTTACAAACCATGCTTTCAGTGGGCTACTACCGGAACATCTACACCCCACCGGACAGTAGCACTTCTTTTATCCAAGACTATAGTCGAGATGGCCGATTGCTACAGACCCTGCATCTGGGGACAGGGCGCAGAGTCTTATACAAGTACACCAAGCAAGCAAGGCTTTCTGAGGTTCTCTATGATACCACTCAGGTCACATTAACATATGAAGAGTCTTCTGGAGTGATTAAGACAATACACCTGATGCATGACGGATTCATCTGCACAATCAGATACAGGCAAACAGGACCTCTTATTGGACGCCAGATTTTCAGATTCAGTGAAGAAGGCCTTGTGAATGCACGGTTCGACTACAGCTACAACAATTTCCGAGTCACAAGCATGCAAGCTGTAATCAATGAAACCCCTTTGCCTATAGATCTTTACCGATATGTTGATGTCTCTGGCAGAACAGAGCAGTTTGGAAAATTCAGTGTAATTAATTACGATTTAAATCAGGTCATAACTACTACAGTGATGAAACACACCAAAATCTTCAGTGCCAATGGACAAGTCATTGAAGTCCAATATGAAATCCTAAAGGCAATTGCCTACTGGATGACCATTCAATATGATAATGTGGGCCGCATGGTAATATGTGACATAAGGGTAGGAGTAGATGCCAATATAACAAGGTACTTCTATGAATACGATGCTGATGGGCAACTTCAGACTGTTTCTGTAAATGACAAAACCCAGTGGCGTTATAGTTACGATCTGAATGGAAACATCAACCTCTTAAGCCATGGGAAGAGTGCTCGTCTTACTCCTCTCCGATATGACCTCCGAGACCGCATCACCAGATTAGGAGAAATTCAGTATAAAATGGATGAAGATGGCTTTCTGAGGCAGAGGGGAAATGATATTTTTGAATATAATTCTAATGGCCTGCTGCAGAAAGCCTACAATAAGGCTTCTGGCTGGACTGTGCAGTATTACTATGATGGGCTTGGGCGACGTGTCGCGAGTAAGTCCAGCCTAGGGCAGCACCTTCAGTTCTTTTATGCAGACCTTACCAACCCCATAAGAGTTACTCATTTGTACAACCACACAAGCTCGGAGATTACATCTCTGTATTATGATCTCCAAGGTCACCTTATTGCCATGGAGTTAAGCAGTGGTGAAGAATATTATGTAGCCTGTGATAATACAGGTACCCCACTAGCTGTGTTCAGCAGCCGAGGTCAGGTCATAAAGGAGATACTATACACACCTTATGGCGATATCTATCATGACACTTACCCTGACTTTCAGGTCATTATTGGTTTTCATGGAGGACTCTATGATTTCCTTACTAAATTAGTGCACCTGGGGCAAAGGGATTATGATGTTGTTGCTGGCAGATGGACAACGCCTAATCATCACATATGGAAACAGTTGAACCTCCTTCCTAAACCATTCAACCTCTACTCCTTTGAAAATAACTACCCAGTTGGCAAAATTCAAGATGTTGCAAAGTATACCACAGACATCAGAAGTTGGTTGGAGCTATTTGGTTTCCAATTACACAATGTACTACCTGGATTTCCCAAACCTGAATTAGAAAATTTAGAATTAACTTACGAGCTTCTACGGCTTCAGACAAAAACTCAAGAGTGGGATCCTGGAAAGACTATCCTGGGCATTCAGTGTGAACTCCAGAAACAGCTCAGGAATTTCATTTCCTTGGACCAACTACCTATGACTCCCCGATACAATGATGGACGGTGCCTTGAAGGAGGGAAGCAACCAAGGTTTGCTGCTGTCCCTTCTGTTTTTGGGAAAGGTATAAAATTTGCCATCAAGGATGGCATAGTAACAGCTGATATTATAGGAGTAGCCAATGAAGATAGCAGGCGGCTTGCTGCCATTCTCAATAATGCCCATTACCTGGAAAACCTACATTTTACCATAGAGGGGAGGGACACTCACTACTTCATTAAGCTTGGGTCTCTGGAGGAAGACCTGGTGCTCATCGGTAACACTGGGGGGAGGCGGATTCTGGAGAATGGTGTCAATGTCACTGTGTCCCAGATGACTTCTGTGTTGAATGGGAGGACTAGACGGTTTGCAGATATTCAGCTCCAGCATGGAGCCCTGTGCTTCAACATCCGGTATGGGACAACTGTCGAAGAGGAAAAGAATCACGTGTTGGAGATTGCCAGACAGCGCGCAGTGGCCCAGGCCTGGACTAAGGAACAAAGAAGGCTGCAAGAGGGGGAAGAGGGGATTAGGGCATGGACAGAAGGGGAAAAGCAGCAGCTTTTGAGCACTGGGCGGGTACAAGGTTACGATGGGTATTTTGTTTTGTCTGTTGAGCAGTATTTAGAACTTTCTGACAGTGCCAATAATATTCACTTTATGAGACAGAGCGAAATAGGCAGGAGGTAA MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESELCTMECGSHGVCSRGICQCEEGWVGPTCEERSCHSHCTEHGQCKDGKCECSPGWEGDHCTIAHYLDAVRDGCPGLCFGNGRCTLDQNGWHCVCQVGWSGTGCNVVMEMLCGDNLDNDGDGLTDCVDPDCCQQSNCYISPLCQGSPDPLDLIQQSQTLFSQHTSRLFYDRIKFLIGKDSTHVIPPEVSFDSRRACVIRGQVVAIDGTPLVGVNVSFLHHSDYGFTISRQDGSFDLVAIGGISVILIFDRSPFLPEKRTLWLPWNQFIVVEKVTMQRVVSDPPSCDISNFISPNPIVLPSPLTSFGGSCPERGTIVPELQVVQEEIPIPSSFVRLSYLSSRTPGYKTLLRILLTHSTIPVGMIKVHLTVAVEGRLTQKWFPAAINLVYTFAWNKTDIYGQKVWGLAEALVSVGYEYETCPDFILWEQRTVVLQGFEMDASNLGGWSLNKHHILNPQSGIIHKGNGENMFISQQPPVISTIMGNGHQRSVACTNCNGPAHNNKLFAPVALASGPDGSVYVGDFNFVRRIFPSGNSVSILELRNRDTRHSTSPAHKYYLAMDPVSESLYLSDTNTRKVYKLKSLVETKDLSKNFEVVAGTGDQCLPFDQSHCGDGGRASEASLNSPRGITVDRHGFIYFVDGTMIRKIDENAVITTVIGSNGLTSTQPLSCDSGMDITQVRLEWPTDLAVNPMDNSLYVLDNNIVLQISENRRVRIIAGRPIHCQVPGIDHFLVSKVAIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEIYIIAGAPTDCDCKIDPNCDCFSGDGGYAKDAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDMNIYEIASPADQELYQFTVNGTHLHTLNLITRDYVYNFTYNSEGDLGAITSSNGNSVHIRRDAGGMPLWLVVPGGQVYWLTISSNGVLKRVSAQGYNLALMTYPGNTGLLATKSNENGWTTVYEYDPEGHLTNATFPTGEVSSFHSDLEKLTKVELDTSNRENVLMSTNLTATSTIYILKQENTQSTYRVNPDGSLRVTFASGMEIGLSSEPHILAGAVNPTLGKCNISLPGEHNANLIEWRQRKEQNKGNVSAFERRLRAHNRNLLSIDFDHITRTGKIYDDHRKFTLRILYDQTGRPILWSPVSRYNEVNITYSPSGLVTFIQRGTWNEKMEYDQSGKIISRTWADGKIWSYTYLEKSVMLLLHSQRRYIFEYDQPDCLLSVTMPSMVRHSLQTMLSVGYYRNIYTPPDSSTSFIQDYSRDGRLLQTLHLGTGRRVLYKYTKQARLSEVLYDTTQVTLTYEESSGVIKTIHLMHDGFICTIRYRQTGPLIGRQIFRFSEEGLVNARFDYSYNNFRVTSMQAVINETPLPIDLYRYVDVSGRTEQFGKFSVINYDLNQVITTTVMKHTKIFSANGQVIEVQYEILKAIAYWMTIQYDNVGRMVICDIRVGVDANITRYFYEYDADGQLQTVSVNDKTQWRYSYDLNGNINLLSHGKSARLTPLRYDLRDRITRLGEIQYKMDEDGFLRQRGNDIFEYNSNGLLQKAYNKASGWTVQYYYDGLGRRVASKSSLGQHLQFFYADLTNPIRVTHLYNHTSSEITSLYYDLQGHLIAMELSSGEEYYVACDNTGTPLAVFSSRGQVIKEILYTPYGDIYHDTYPDFQVIIGFHGGLYDFLTKLVHLGQRDYDVVAGRWTTPNHHIWKQLNLLPKPFNLYSFENNYPVGKIQDVAKYTTDIRSWLELFGFQLHNVLPGFPKPELENLELTYELLRLQTKTQEWDPGKTILGIQCELQKQLRNFISLDQLPMTPRYNDGRCLEGGKQPRFAAVPSVFGKGIKFAIKDGIVTADIIGVANEDSRRLAAILNNAHYLENLHFTIEGRDTHYFIKLGSLEEDLVLIGNTGGRRILENGVNVTVSQMTSVLNGRTRRFADIQLQHGALCFNIRYGTTVEEEKNHVLEIARQRAVAQAWTKEQRRLQEGEEGIRAWTEGEKQQLLSTGRVQGYDGYFVLSVEQYLELSDSANNIHFMRQSEIGRR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32388 MTO1::KCNQ5 ENSG00000135297.17::ENSG00000185760.18 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1929 FALSE NA FALSE NA MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73482620:+ chr6:74171301-74218959:+ chr6:74192343:+ KCNQ5 ENSG00000185760.18 protein_coding + + chr6:72621792-73198853:+ chr6:73190573:+ chr6:73331520-73908576:+ chr6:73900296:+ chr6:73486613,chr6:73486611 chr6:73189133,chr6:73189128 NA NA chr6:74196336,chr6:74196334 chr6:73898856,chr6:73898851 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pyr_redox_3|35-68|0.00014^AlaDh_PNT_C|36-75|1.6e-06^Pyr_redox_2|37-70|5.5e-08^HI0933_like|37-68|7.9e-06^GIDA|38-420|3.7e-148^FAD_oxidored|38-77|3.8e-10^FAD_binding_2|38-70|6.8e-08^DAO|38-74|0.00018^Pyr_redox|39-73|1.8e-05^GIDA_C|61-76|3.5^FAD_binding_2|153-209|0.094^DAO|172-200|0.35^Pyr_redox_3|180-196|1.8^HI0933_like|379-408|0.2^GIDA|451-475|0.014^GIDA_C_1st|538-632|1.3e-15^GIDA_C|642-698|3.3e-23 none ["KCNQ5:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.26Mb] 22 22 22 22 ONLY_REF_SPLICE YES_LDAS 0.47 GT 1.9899 AG 1.5628 ENST00000415954.6 1-1757 ENST00000370398.6 1578-2799 chr6|+|[0]73461855-73462071[0]|[1]73466209-73466408[2]|[0]73466489-73466606[0]|[1]73473365-73473654[2]|[0]73479732-73479844[1]|[2]73479936-73480126[0]|[1]73480675-73480805[2]|[0]73480997-73481116[2]|[0]73482040-73482244[0]|[1]73482449-73482620[1]<==>chr6|+|[2]73190573-73190704[1]|[2]73192565-73192691[2]|[0]73194452-73195414[2] atgttctacttccgaggctgtggccgttgggtcgcggtttccttcaccaagcagcaatttccgttggcacggttgagcagtgacagcgcggcgccccggactccgcacttcgacgtgatagtcattggtggaggacatgccgggactgaggcagccaccgccgccgctcggtgcggctctcggactctgctcctcactcaccgcgtggacacgatcggtcagatgtcatgtaatccttcctttggtggcatcggaaagggacatttaatgagggaagtagatgccttggatggcctgtgttctcgcatctgtgaccagtctggtgtacattataaagtattaaaccggcgtaagggaccagctgtgtggggtctgagagctcagattgataggaaactctataaacagaacatgcagaaagaaatcttgaatacaccactgcttactgttcaggagggagctgtagaagatcttattcttacagaaccagagcctgaacacactgggaaatgccgtgtcagtggggttgttttggtggatggaagcacagtatatgcagagagtgtgattctgactactgggacatttctgagaggcatgattgtaattggattggagacgcatccagcaggacgtttaggggatcagccttctataggattggctcagacactggagaagttagggtttgtggtgggaaggttgaagactgggactccaccccgaattgccaaagagtccattaatttcagtattctaaacaagcatataccggacaatccatccataccattcagctttaccaatgagacagtatggattaagccagaagatcagctgccatgttacttgactcacaccaaccctagagtggatgagattgtccttaagaaccttcaccttaatagtcatgttaaagaaacgacaagaggacctcgatactgtccctccattgaatcaaaagttttgcgttttccaaaccgtctacatcaggtttggttggaacctgaaggaatggattctgaccttatctacccacaggggttatctatgacgctaccagctgagttacaagagaaaatgatcacatgcatcagaggcttggagaaagctaaagtgattcagccaggctacggtgttcagtatgattacttagatccccgtcagatcaccccttccttggagactcatttggttcaacgactcttctttgctggacagatcaatggcaccactggttatgaggaagctgcagctcaaacagagtgttgctctgttgccaggctggagtgcagtgatatgatctcccagcttcaagcgatcctcctgcctcagccctccctagtagctgggactgcaggcatgcaccacaacacccagggtgtgatagccggaatcaacgccagtcttcgggtcagtcgcaagcctccctttgtggttagccgaacagaaggttacataggagtcttgattgatgacctcactactctgggcaccagtgaaccataccgcatgtttaccagccgagtagagttccgtttgtcactgcgccctgataatgctgacagccggctcacactgcgagggtataaagacgctggctgtgtgtcccaacaacgatatgaaagagcttgttggatgaagtcttctttagaagaaggcatttctgtgttgaaatctattgagtttttgagctctaaatggaaaaaattaatcccagaggcttctataagtactagtagaagtctgcctgtcagAATTATGAAATTTCATGTTGCAAAACGGAAGTTTAAGGAAACATTACGTCCATATGATGTAAAAGATGTCATTGAACAATATTCTGCTGGTCATCTGGACATGTTGTGTAGAATTAAAAGCCTTCAAACACGTGTTGATCAAATTCTTGGAAAAGGGCAAATCACATCAGATAAGAAGAGCCGAGAGAAAATAACAGCAGAACATGAGACCACAGACGATCTCAGTATGCTCGGTCGGGTGGTCAAGGTTGAAAAACAGGTACAGTCCATAGAATCCAAGCTGGACTGCCTACTAGACATCTATCAACAGGTCCTTCGGAAAGGCTCTGCCTCAGCCCTCGCTTTGGCTTCATTCCAGATCCCACCTTTTGAATGTGAACAGACATCTGACTATCAAAGCCCTGTGGATAGCAAAGATCTTTCGGGTTCCGCACAAAACAGTGGCTGCTTATCCAGATCAACTAGTGCCAACATCTCGAGAGGCCTGCAGTTCATTCTGACGCCAAATGAGTTCAGTGCCCAGACTTTCTACGCGCTTAGCCCTACTATGCACAGTCAAGCAACACAGGTGCCAATTAGTCAAAGCGATGGCTCAGCAGTGGCAGCCACCAACACCATTGCAAACCAAATAAATACGGCACCCAAGCCAGCAGCCCCAACAACTTTACAGATCCCACCTCCTCTCCCAGCCATCAAGCATCTGCCCAGGCCAGAAACTCTGCACCCTAACCCTGCAGGCTTACAGGAAAGCATTTCTGACGTCACCACCTGCCTTGTTGCCTCCAAGGAAAATGTTCAGGTTGCACAGTCAAATCTCACCAAGGACCGTTCTATGAGGAAAAGCTTTGACATGGGAGGAGAAACTCTGTTGTCTGTCTGTCCCATGGTGCCGAAGGACTTGGGCAAATCTTTGTCTGTGCAAAACCTGATCAGGTCGACCGAGGAACTGAATATACAACTTTCAGGGAGTGAGTCAAGTGGCTCCAGAGGCAGCCAAGATTTTTACCCCAAATGGAGGGAATCCAAATTGTTTATAACTGATGAAGAGGTGGGTCCCGAAGAGACAGAGACAGACACTTTTGATGCCGCACCGCAGCCTGCCAGGGAAGCTGCCTTTGCATCAGACTCTCTAAGGACTGGAAGGTCACGATCATCTCAGAGCATTTGTAAGGCAGGAGAAAGTACAGATGCCCTCAGCTTGCCTCATGTCAAACTGAAATAA MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQLQAILLPQPSLVAGTAGMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDLSMLGRVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALALASFQIPPFECEQTSDYQSPVDSKDLSGSAQNSGCLSRSTSANISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPISQSDGSAVAATNTIANQINTAPKPAAPTTLQIPPPLPAIKHLPRPETLHPNPAGLQESISDVTTCLVASKENVQVAQSNLTKDRSMRKSFDMGGETLLSVCPMVPKDLGKSLSVQNLIRSTEELNIQLSGSESSGSRGSQDFYPKWRESKLFITDEEVGPEETETDTFDAAPQPAREAAFASDSLRTGRSRSSQSICKAGESTDALSLPHVKLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32392 RPH3AL::TENM1 ENSG00000181031.16::ENSG00000009694.14 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1934 TRUE 3553 TRUE 1345 RPH3AL ENSG00000181031.16 protein_coding - - chr17:212389-386254:- chr17:215654:- chr17:62180-236045:- chr17:65445:- TENM1 ENSG00000009694.14 protein_coding - - chrX:124375903-125204312:- chrX:124565560:- chrX:123509753-124338161:- chrX:123699410:- chr17:213070,chr17:213073 chrX:124569565,chrX:124569565 NA NA chr17:62861,chr17:62864 chrX:123703415,chrX:123703415 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HscB_4_cys|9-19|2.5^zf-B_box|11-17|5.9^PHD|11-16|1.1^FYVE_2|46-158|1.5e-40^IBR|92-130|4.6e-06^FYVE|92-144|5.5e-05^C1_1|93-123|0.0006^HscB_4_cys|94-116|0.00076^zf-B_box|95-99|7.1^PHD|95-141|0.00015^FYVE_CARP1-2|95-98|5.3^zf-B_box|110-124|2.6e-05^zf-piccolo|111-146|1.9e-07^FYVE_CARP1-2|111-142|7.6e-05^C1_1|118-142|0.33^HscB_4_cys|120-135|0.14^zf-B_box|137-143|0.84 RHS_repeat|2115-2123|10^RHS_repeat|2142-2169|4e-06^RHS_repeat|2184-2193|7.7^RHS_repeat|2217-2253|1e-06^RHS_repeat|2285-2300|0.71^RHS|2302-2333|0.00011^Tox-GHH|2630-2707|1.4e-31 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chrX] 10 18 10 9.3 ONLY_REF_SPLICE YES_LDAS 0.2061 GT 1.5058 AG 1.9656 ENST00000331302.12 1-876 ENST00000422452.3 2024-8145 chr17|-|[2]215654-215802[1]|[0]219623-219736[1]|[0]247111-247285[0]|[2]281768-281854[0]|[2]319420-319549[2]|[1]321272-321415[2]|[1]327467-327543[0]<==>chrX|-|[2]124380536-124381294[0]|[2]124382670-124382812[1]|[0]124383634-124384854[1]|[0]124385677-124386064[0]|[2]124392052-124392348[0]|[2]124405031-124405266[1]|[0]124406317-124406489[2]|[1]124420311-124420821[1]|[0]124422272-124422638[0]|[2]124453337-124453491[1]|[0]124481732-124481964[2]|[1]124487209-124487229[2]|[1]124497016-124497265[1]|[0]124503560-124503703[1]|[0]124520517-124520784[0]|[2]124523364-124523625[2]|[1]124529864-124529983[2]|[1]124546874-124547090[1]|[0]124561671-124561817[1]|[0]124563749-124563772[1]|[0]124565375-124565560[1] atggccgacaccatcttcggcagcgggaatgatcagtgggtttgccccaatgaccggcagcttgcccttcgagccaagctgcagacgggctggtccgtgcacacctaccagacggagaagcagaggaggaagcagcacctcagcccggcggaggtggaggccatcctgcaggtcatccagagggcagagcggctcgacgtcctggagcagcagagaatcgggcggctggtggagcggctggagaccatgaggcggaatgtgatggggaacggcctgtcccagtgtctgctctgcggggaggtgctgggcttcctgggcagctcgtcggtgttctgcaaagactgcaggaagaaagtctgcaccaaatgtgggatcgaggcctcccctggccagaagcggcccctgtggctgtgtaagatctgcagtgagcaaagagaggtctggaagaggtcgggggcctggttctacaaagggctccccaagtatatcttgcccctgaagacccctggccgagctgatgacccccacttccgacctttgcccacggaaccggcagagcgagagcccagaagctctgagaccagccgcatctacacgtgggcccgaggaagagtggtttccagtgacagtgacagtgactcggatcttagctcctccagcctagaggacagactcccatccactggggtcagggaccggaaaggcgacaaaccctggaaggagtcaggtggcagcgtggaggcccccaggatggggttcacccacccgccgggccacctctctgggtgccagagcagcctggccagtggtgagacggggacaggctctgctgacccgccagggggaccccgccccgggctgacccgaagggccccgAGCTGTGTACCATGGAGTGTGGTAGCCATGGAGTCTGCTCAAGAGGAATTTGCCAGTGTGAAGAAGGCTGGGTAGGACCAACATGTGAGGAACGCTCCTGTCATTCTCATTGTACTGAGCATGGCCAATGCAAAGATGGAAAATGTGAGTGTAGCCCTGGATGGGAGGGCGACCACTGCACAATTGCTCACTACTTAGATGCTGTCCGAGATGGCTGCCCAGGGCTCTGCTTTGGAAATGGACGATGTACCCTGGATCAAAATGGTTGGCACTGTGTGTGTCAGGTGGGTTGGAGTGGGACAGGCTGCAATGTTGTCATGGAAATGCTTTGTGGAGATAACTTGGACAATGATGGAGATGGTTTAACCGACTGTGTGGATCCTGACTGTTGTCAACAAAGCAACTGTTATATAAGTCCTCTCTGCCAGGGCTCACCAGATCCTCTTGACCTCATTCAGCAAAGCCAAACTCTCTTCTCTCAGCACACTTCAAGACTTTTTTATGATCGAATCAAATTCCTCATTGGCAAGGACAGTACTCATGTCATTCCTCCTGAGGTGTCATTTGACAGCAGGCGTGCCTGTGTGATTCGAGGCCAAGTGGTGGCCATAGATGGAACTCCTCTAGTGGGAGTGAATGTCAGTTTCTTGCACCACAGTGATTATGGGTTTACCATCAGCCGGCAAGATGGAAGCTTTGACCTCGTGGCCATCGGTGGCATCTCTGTCATCTTAATCTTCGACCGATCCCCTTTCCTGCCTGAGAAGAGAACACTCTGGTTGCCTTGGAATCAGTTTATTGTGGTAGAGAAAGTCACCATGCAGAGAGTTGTATCAGACCCGCCATCCTGCGATATCTCCAACTTTATCAGCCCAAACCCTATTGTGCTTCCTTCACCGCTCACATCATTTGGAGGGTCCTGTCCAGAGAGGGGAACTATTGTTCCTGAGCTGCAGGTTGTACAGGAGGAAATTCCCATTCCCTCCAGCTTTGTGAGGCTGAGTTACCTGAGCAGCCGCACCCCTGGGTATAAAACCCTGCTACGGATCCTTCTGACACATTCAACGATTCCTGTAGGCATGATAAAAGTACACCTCACAGTAGCTGTGGAAGGGCGACTCACACAGAAGTGGTTTCCCGCCGCAATTAATCTTGTCTACACATTTGCTTGGAACAAGACCGACATCTATGGACAGAAGGTTTGGGGCCTGGCAGAGGCTTTGGTATCTGTGGGATATGAATATGAAACGTGCCCTGACTTTATTCTCTGGGAGCAAAGGACAGTCGTTTTACAAGGTTTTGAGATGGATGCTTCTAACCTAGGAGGCTGGTCTTTGAATAAGCATCACATTTTGAATCCTCAAAGTGGAATCATACATAAAGGGAATGGAGAAAATATGTTCATTTCCCAGCAGCCCCCAGTCATATCAACCATAATGGGTAATGGACACCAAAGGAGTGTAGCCTGCACCAACTGCAATGGCCCAGCCCACAACAACAAACTCTTTGCTCCTGTCGCCTTAGCTTCTGGCCCTGATGGCAGTGTGTATGTTGGCGACTTCAATTTTGTAAGGAGAATATTTCCCTCGGGAAACTCCGTTAGTATTTTGGAATTAAGAAACAGAGATACCAGACATAGCACAAGTCCTGCTCACAAATACTATCTGGCTATGGACCCTGTGTCTGAATCACTCTATCTATCAGACACCAATACTCGCAAAGTCTACAAGTTGAAATCTCTTGTGGAGACGAAAGATCTGTCCAAGAATTTTGAAGTGGTGGCAGGAACTGGTGATCAGTGCCTTCCCTTTGACCAGAGTCATTGTGGAGATGGTGGGAGAGCATCGGAAGCTTCACTGAATAGCCCTCGAGGCATCACAGTTGATAGGCATGGATTTATTTACTTTGTGGATGGGACTATGATTCGCAAAATTGATGAGAATGCTGTGATCACAACTGTAATCGGCTCAAATGGTCTGACTTCCACACAACCACTGAGCTGTGACTCAGGAATGGACATCACTCAGGTGCGATTAGAGTGGCCAACAGACCTTGCAGTAAATCCTATGGACAATTCATTGTATGTCTTGGATAACAACATTGTGCTGCAAATTTCTGAGAACAGGCGTGTTCGGATCATCGCAGGACGCCCCATTCACTGCCAGGTGCCAGGCATCGATCATTTCCTGGTCAGCAAGGTAGCAATTCACTCCACTCTAGAGTCAGCGAGGGCCATCAGTGTCTCCCACAGCGGGCTGCTCTTCATAGCTGAAACAGACGAGAGGAAAGTAAACCGCATTCAGCAAGTAACCACCAATGGGGAGATCTACATCATCGCTGGTGCCCCCACTGACTGTGACTGCAAAATTGATCCAAACTGTGACTGTTTTTCAGGTGATGGTGGCTATGCCAAAGATGCAAAGATGAAAGCCCCTTCCTCCTTAGCAGTGTCGCCTGATGGAACCCTCTATGTGGCAGACCTCGGAAATGTTCGAATTCGTACCATCAGCAGGAACCAAGCCCACCTGAATGACATGAACATTTATGAGATTGCTTCACCCGCTGATCAGGAACTGTACCAGTTCACTGTAAATGGAACCCACCTACACACCCTGAACTTGATAACAAGGGACTATGTTTATAACTTCACCTACAATTCTGAAGGTGACTTGGGCGCGATTACCAGCAGCAATGGCAATTCAGTGCACATTCGCCGTGATGCAGGCGGAATGCCGCTATGGCTTGTGGTGCCTGGCGGACAAGTATACTGGCTGACTATAAGCAGCAATGGAGTCCTGAAAAGAGTGTCAGCCCAAGGCTATAATCTGGCCTTAATGACCTATCCAGGAAACACAGGGCTTCTGGCTACCAAAAGTAACGAAAATGGATGGACAACCGTTTATGAGTATGACCCCGAGGGACACCTGACCAATGCAACGTTTCCCACTGGAGAGGTCAGCAGCTTCCACAGTGACCTGGAGAAGCTGACAAAAGTGGAGCTAGATACTTCCAACCGTGAAAATGTCCTCATGTCAACCAACTTGACGGCAACTAGTACCATATATATTTTAAAACAAGAAAATACTCAAAGTACCTATCGGGTGAATCCAGATGGTTCCCTGCGTGTCACTTTTGCCAGCGGGATGGAGATCGGCCTCAGCTCAGAGCCCCACATCCTGGCAGGGGCAGTCAACCCTACCCTGGGCAAATGCAACATCTCATTGCCCGGAGAGCACAATGCAAACCTCATCGAGTGGCGGCAGAGGAAGGAGCAAAACAAAGGCAATGTTTCGGCTTTTGAAAGGAGGCTGAGGGCCCACAACAGAAACCTACTCTCCATAGATTTTGATCATATAACCCGCACAGGAAAGATCTATGATGACCATCGAAAATTCACCCTTCGAATTCTTTATGACCAGACTGGGCGACCCATTCTGTGGTCTCCTGTAAGCAGATATAATGAAGTGAACATCACATATTCACCTTCGGGATTGGTGACGTTTATTCAAAGAGGAACGTGGAATGAAAAAATGGAATATGACCAGAGTGGGAAAATTATTTCAAGAACTTGGGCTGATGGGAAAATTTGGAGCTATACCTACTTAGAAAAATCTGTGATGCTTCTCCTACACAGCCAGCGGCGTTACATCTTTGAGTATGACCAACCAGATTGTCTGCTCTCAGTCACCATGCCTAGCATGGTGCGTCACAGCTTACAAACCATGCTTTCAGTGGGCTACTACCGGAACATCTACACCCCACCGGACAGTAGCACTTCTTTTATCCAAGACTATAGTCGAGATGGCCGATTGCTACAGACCCTGCATCTGGGGACAGGGCGCAGAGTCTTATACAAGTACACCAAGCAAGCAAGGCTTTCTGAGGTTCTCTATGATACCACTCAGGTCACATTAACATATGAAGAGTCTTCTGGAGTGATTAAGACAATACACCTGATGCATGACGGATTCATCTGCACAATCAGATACAGGCAAACAGGACCTCTTATTGGACGCCAGATTTTCAGATTCAGTGAAGAAGGCCTTGTGAATGCACGGTTCGACTACAGCTACAACAATTTCCGAGTCACAAGCATGCAAGCTGTAATCAATGAAACCCCTTTGCCTATAGATCTTTACCGATATGTTGATGTCTCTGGCAGAACAGAGCAGTTTGGAAAATTCAGTGTAATTAATTACGATTTAAATCAGGTCATAACTACTACAGTGATGAAACACACCAAAATCTTCAGTGCCAATGGACAAGTCATTGAAGTCCAATATGAAATCCTAAAGGCAATTGCCTACTGGATGACCATTCAATATGATAATGTGGGCCGCATGGTAATATGTGACATAAGGGTAGGAGTAGATGCCAATATAACAAGGTACTTCTATGAATACGATGCTGATGGGCAACTTCAGACTGTTTCTGTAAATGACAAAACCCAGTGGCGTTATAGTTACGATCTGAATGGAAACATCAACCTCTTAAGCCATGGGAAGAGTGCTCGTCTTACTCCTCTCCGATATGACCTCCGAGACCGCATCACCAGATTAGGAGAAATTCAGTATAAAATGGATGAAGATGGCTTTCTGAGGCAGAGGGGAAATGATATTTTTGAATATAATTCTAATGGCCTGCTGCAGAAAGCCTACAATAAGGCTTCTGGCTGGACTGTGCAGTATTACTATGATGGGCTTGGGCGACGTGTCGCGAGTAAGTCCAGCCTAGGGCAGCACCTTCAGTTCTTTTATGCAGACCTTACCAACCCCATAAGAGTTACTCATTTGTACAACCACACAAGCTCGGAGATTACATCTCTGTATTATGATCTCCAAGGTCACCTTATTGCCATGGAGTTAAGCAGTGGTGAAGAATATTATGTAGCCTGTGATAATACAGGTACCCCACTAGCTGTGTTCAGCAGCCGAGGTCAGGTCATAAAGGAGATACTATACACACCTTATGGCGATATCTATCATGACACTTACCCTGACTTTCAGGTCATTATTGGTTTTCATGGAGGACTCTATGATTTCCTTACTAAATTAGTGCACCTGGGGCAAAGGGATTATGATGTTGTTGCTGGCAGATGGACAACGCCTAATCATCACATATGGAAACAGTTGAACCTCCTTCCTAAACCATTCAACCTCTACTCCTTTGAAAATAACTACCCAGTTGGCAAAATTCAAGATGTTGCAAAGTATACCACAGACATCAGAAGTTGGTTGGAGCTATTTGGTTTCCAATTACACAATGTACTACCTGGATTTCCCAAACCTGAATTAGAAAATTTAGAATTAACTTACGAGCTTCTACGGCTTCAGACAAAAACTCAAGAGTGGGATCCTGGAAAGACTATCCTGGGCATTCAGTGTGAACTCCAGAAACAGCTCAGGAATTTCATTTCCTTGGACCAACTACCTATGACTCCCCGATACAATGATGGACGGTGCCTTGAAGGAGGGAAGCAACCAAGGTTTGCTGCTGTCCCTTCTGTTTTTGGGAAAGGTATAAAATTTGCCATCAAGGATGGCATAGTAACAGCTGATATTATAGGAGTAGCCAATGAAGATAGCAGGCGGCTTGCTGCCATTCTCAATAATGCCCATTACCTGGAAAACCTACATTTTACCATAGAGGGGAGGGACACTCACTACTTCATTAAGCTTGGGTCTCTGGAGGAAGACCTGGTGCTCATCGGTAACACTGGGGGGAGGCGGATTCTGGAGAATGGTGTCAATGTCACTGTGTCCCAGATGACTTCTGTGTTGAATGGGAGGACTAGACGGTTTGCAGATATTCAGCTCCAGCATGGAGCCCTGTGCTTCAACATCCGGTATGGGACAACTGTCGAAGAGGAAAAGAATCACGTGTTGGAGATTGCCAGACAGCGCGCAGTGGCCCAGGCCTGGACTAAGGAACAAAGAAGGCTGCAAGAGGGGGAAGAGGGGATTAGGGCATGGACAGAAGGGGAAAAGCAGCAGCTTTTGAGCACTGGGCGGGTACAAGGTTACGATGGGTATTTTGTTTTGTCTGTTGAGCAGTATTTAGAACTTTCTGACAGTGCCAATAATATTCACTTTATGAGACAGAGCGAAATAGGCAGGAGGTAA MADTIFGSGNDQWVCPNDRQLALRAKLQTGWSVHTYQTEKQRRKQHLSPAEVEAILQVIQRAERLDVLEQQRIGRLVERLETMRRNVMGNGLSQCLLCGEVLGFLGSSSVFCKDCRKKVCTKCGIEASPGQKRPLWLCKICSEQREVWKRSGAWFYKGLPKYILPLKTPGRADDPHFRPLPTEPAEREPRSSETSRIYTWARGRVVSSDSDSDSDLSSSSLEDRLPSTGVRDRKGDKPWKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGSADPPGGPRPGLTRRAPSCVPWSVVAMESAQEEFASVKKAG*DQHVRNAPVILIVLSMANAKMENVSVALDGRATTAQLLTT*MLSEMAAQGSALEMDDVPWIKMVGTVCVRWVGVGQAAMLSWKCFVEITWTMMEMV*PTVWILTVVNKATVI*VLSARAHQILLTSFSKAKLSSLSTLQDFFMIESNSSLARTVLMSFLLRCHLTAGVPV*FEAKWWP*MELL*WE*MSVSCTTVIMGLPSAGKMEALTSWPSVASLSS*SSTDPLSCLRREHSGCLGISLLW*RKSPCRELYQTRHPAISPTLSAQTLLCFLHRSHHLEGPVQRGELLFLSCRLYRRKFPFPPAL*G*VT*AAAPLGIKPCYGSF*HIQRFL*A**KYTSQ*LWKGDSHRSGFPPQLILSTHLLGTRPTSMDRRFGAWQRLWYLWDMNMKRALTLFSGSKGQSFYKVLRWMLLT*EAGL*ISITF*ILKVESYIKGMEKICSFPSSPQSYQP*WVMDTKGV*PAPTAMAQPTTTNSLLLSP*LLALMAVCMLATSIL*GEYFPRETPLVFWN*ETEIPDIAQVLLTNTIWLWTLCLNHSIYQTPILAKSTS*NLLWRRKICPRILKWWQELVISAFPLTRVIVEMVGEHRKLH*IALEASQLIGMDLFTLWMGL*FAKLMRML*SQL*SAQMV*LPHNH*AVTQEWTSLRCD*SGQQTLQ*ILWTIHCMSWITTLCCKFLRTGVFGSSQDAPFTARCQASIISWSAR*QFTPL*SQRGPSVSPTAGCSS*LKQTRGK*TAFSK*PPMGRSTSSLVPPLTVTAKLIQTVTVFQVMVAMPKMQR*KPLPP*QCRLMEPSMWQTSEMFEFVPSAGTKPT*MT*TFMRLLHPLIRNCTSSL*MEPTYTP*T**QGTMFITSPTILKVTWARLPAAMAIQCTFAVMQAECRYGLWCLADKYTG*L*AAMES*KECQPKAIIWP**PIQETQGFWLPKVTKMDGQPFMSMTPRDT*PMQRFPLERSAASTVTWRS*QKWS*ILPTVKMSSCQPT*RQLVPYIF*NKKILKVPIG*IQMVPCVSLLPAGWRSASAQSPTSWQGQSTLPWANATSHCPESTMQTSSSGGRGRSKTKAMFRLLKGG*GPTTETYSP*ILII*PAQERSMMTIENSPFEFFMTRLGDPFCGLL*ADIMK*TSHIHLRDW*RLFKEERGMKKWNMTRVGKLFQELGLMGKFGAIPT*KNL*CFSYTASGVTSLSMTNQIVCSQSPCLAWCVTAYKPCFQWATTGTSTPHRTVALLLSKTIVEMADCYRPCIWGQGAESYTSTPSKQGFLRFSMIPLRSH*HMKSLLE*LRQYT*CMTDSSAQSDTGKQDLLLDARFSDSVKKAL*MHGSTTATTISESQACKL*SMKPLCL*IFTDMLMSLAEQSSLENSV*LITI*IRS*LLQ**NTPKSSVPMDKSLKSNMKS*RQLPTG*PFNMIMWAAW*YVT*G*E*MPI*QGTSMNTMLMGNFRLFL*MTKPSGVIVTI*METSTS*AMGRVLVLLLSDMTSETASPD*EKFSIKWMKMAF*GRGEMIFLNIILMACCRKPTIRLLAGLCSITMMGLGDVSRVSPA*GSTFSSFMQTLPTP*ELLICTTTQARRLHLCIMISKVTLLPWS*AVVKNIM*PVIIQVPH*LCSAAEVRS*RRYYTHLMAISIMTLTLTFRSLLVFMEDSMISLLN*CTWGKGIMMLLLADGQRLIITYGNS*TSFLNHSTSTPLKITTQLAKFKMLQSIPQTSEVGWSYLVSNYTMYYLDFPNLN*KI*N*LTSFYGFRQKLKSGILERLSWAFSVNSRNSSGISFPWTNYL*LPDTMMDGALKEGSNQGLLLSLLFLGKV*NLPSRMA**QLIL*E*PMKIAGGLLPFSIMPITWKTYILP*RGGTLTTSLSLGLWRKTWCSSVTLGGGGFWRMVSMSLCPR*LLC*MGGLDGLQIFSSSMEPCASTSGMGQLSKRKRITCWRLPDSAQWPRPGLRNKEGCKRGKRGLGHGQKGKSSSF*ALGGYKVTMGILFCLLSSI*NFLTVPIIFTL*DRAK*AGG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32396 ENSG00000253642::RP1 ENSG00000253642.6::ENSG00000104237.11 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1938 FALSE NA FALSE NA ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:33796436:+ chr8:33462374-33896622:+ chr8:33653954:+ RP1 ENSG00000104237.11 protein_coding + + chr8:54509422-54871720:+ chr8:54857028:+ chr8:55421982-55784280:+ chr8:55769588:+ chr8:33981461 chr8:54855304 NA NA chr8:33838979 chr8:55767864 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 9 7 9 7 ONLY_REF_SPLICE YES_LDAS 0.1709 GT 1.9899 AG 1.6049 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32400 ZMAT4::LINC01111 ENSG00000165061.15::ENSG00000254300.1 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1939 FALSE NA FALSE NA ZMAT4 ENSG00000165061.15 protein_coding - - chr8:40530590-40897833:- chr8:40897683:- chr8:40388109-40755352:- chr8:40755202:- LINC01111 ENSG00000254300.1 lncRNA + + chr8:76406654-76524356:+ chr8:76475946:+ chr8:77318889-77436591:+ chr8:77388181:+ chr8:40892158 chr8:76457058 NA NA chr8:40749677 chr8:77369293 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:35.51Mb] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1389 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32405 ST3GAL3::FAM76A ENSG00000126091.21::ENSG00000009780.16 DMS454 SRR8616005 SRR8639220 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1940 FALSE NA FALSE NA ST3GAL3 ENSG00000126091.21 protein_coding + + chr1:43705824-43931165:+ chr1:43736380:+ chr1:44171495-44396837:+ chr1:44202051:+ FAM76A ENSG00000009780.16 protein_coding + + chr1:27725961-27763116:+ chr1:27760495:+ chr1:28052472-28089627:+ chr1:28087006:+ chr1:43741886,chr1:43741887 chr1:27760285,chr1:27760283 NA NA chr1:44207557,chr1:44207558 chr1:28086796,chr1:28086794 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:15.94Mb] 4 6 4 6 ONLY_REF_SPLICE YES_LDAS 0.1068 GT 1.7465 AG 1.5301 ENST00000643283.1 1-118 ENST00000373954.11 838-924 chr1|+|[0]43736263-43736380[0]<==>chr1|+|[0]27760495-27760581[2] atgggactcttggtatttgtgcgcaatctgctgctagccctctgcctctttctggtactgggatttttgtattattctgcgtggaagctacacttactccagtgggaggaggactccaGCCAAAAACCGAGAGCTCCTGAAGCAGGCAGCTGCTTTGTCCAAGAGCAAGAAGTCAGAGAAGTCAGGAGCTATAACCTCTCCATGA MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSQKPRAPEAGSCFVQEQEVREVRSYNLSM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32409 CRKL::AP3D1 ENSG00000099942.13::ENSG00000065000.20 DETROIT562 SRR8616007 SRR8639218 UPPER_AERODIGESTIVE_TRACT carcinoma metastasis star-fusion TRUE TRUE TRUE 1941 FALSE NA FALSE NA CRKL ENSG00000099942.13 protein_coding + + chr22:20917407-20953747:+ chr22:20934244:+ chr22:21271695-21308035:+ chr22:21288532:+ AP3D1 ENSG00000065000.20 protein_coding - - chr19:2100988-2164468:- chr19:2138714:- chr19:2100987-2164467:- chr19:2138713:- chr22:20943084,chr22:20943085 chr19:2151061,chr19:2151060 NA NA chr22:21297372,chr22:21297373 chr19:2151060,chr19:2151059 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SH3_10|7-15|1.4^SH2|14-88|9.1e-26^SH3_2|127-180|9.8e-13^SH3_1|130-175|4e-20^SH3_9|131-179|1.4e-12^hSH3|139-175|1.2e-05^SH3_10|141-174|0.0011^SH3_2|239-293|2.4e-18^SH3_10|249-276|0.086^SH3_9|252-291|3e-08^SH3_1|255-287|7e-06^SH3_9|294-301|4.4 Adaptin_N-PARTIAL|~97-581|2.7e-163^Cnd1|130-268|7.1e-15^HEAT_2|145-180|0.042^Vac14_Fab1_bd|147-202|7.4^V-ATPase_H_C|149-174|0.035^HEAT|151-168|0.42^RTP1_C1|151-220|0.0011^Arm|153-167|9^PDS5|159-220|2.6e-05^HEAT|185-212|0.00021^HEAT_2|186-249|1.8e-05^SCD|188-213|0.4^RasGEF_N_2|190-219|0.12^Arm|192-212|0.055^HEAT|223-249|0.71^Arm|260-272|4.2^Cnd1|294-412|3.3e-05^V-ATPase_H_C|294-332|0.082^Vac14_Fab1_bd|300-337|0.83^RTP1_C1|307-390|6.2e-05^HEAT_2|310-364|0.0052^V-ATPase_H_C|315-370|0.0046^SCD|315-379|0.0025^PDS5|326-384|0.00015^Vac14_Fab1_bd|331-378|0.00017^HEAT|344-369|0.00044^RasGEF_N_2|344-406|3.7e-05^Arm|345-363|0.57^Vac14_Fab1_bd|432-488|3.1^HEAT|480-496|0.31^HEAT_2|480-492|9.4^Arm|516-536|1.6^V-ATPase_H_C|517-555|3.7^Arm|545-576|0.0093^RTP1_C1|565-602|1.2^SCD|569-586|1.9^AP3D1|661-807|9.8e-54^AP3D1|837-866|1.4^AP3D1|923-981|0.011 ["CRKL:ArcherDX_panel","CRKL:Oncogene","CRKL:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr22--chr19] 210 75 210 75 ONLY_REF_SPLICE YES_LDAS 2.7303 GT 1.9656 AG 1.7465 ENST00000354336.8 1-777 ENST00000643116.3 97-3648 chr22|+|[0]20917935-20918245[1]|[2]20933779-20934244[2]<==>chr19|-|[2]2102173-2102268[0]|[2]2108687-2108766[1]|[0]2109086-2109207[2]|[1]2109873-2109958[0]|[2]2110136-2110224[1]|[0]2110707-2110896[0]|[2]2111285-2111332[0]|[2]2111679-2111828[0]|[2]2112860-2112967[0]|[2]2113336-2113413[0]|[2]2114125-2114302[2]|[1]2114748-2114821[0]|[2]2115219-2115418[1]|[0]2115538-2115613[0]|[2]2116207-2116278[0]|[2]2116605-2116746[2]|[1]2117222-2117367[0]|[2]2118601-2118832[2]|[1]2120862-2121092[2]|[1]2121163-2121311[0]|[2]2121734-2121879[1]|[0]2123358-2123406[0]|[2]2123830-2123879[1]|[0]2127152-2127201[2]|[1]2129090-2129163[0]|[2]2129318-2129457[1]|[0]2130408-2130537[0]|[2]2132471-2132578[0]|[2]2137011-2137091[0]|[2]2137727-2137807[0]|[2]2138619-2138714[0] atgtcctccgccaggttcgactcctcggaccgctccgcctggtatatggggccggtgtctcgccaggaggcgcagacccggctccagggccagcgccacggtatgttcctcgtccgcgattcttccacctgccctggggactatgtgctgtcggtgtccgagaactcgcgggtctcccactacatcatcaactcgctgcccaaccgccgttttaagatcggggaccaggaatttgaccatttgccggccctgctggagttttacaagatccactacctggacaccaccaccctcatcgagcctgcgcccaggtatccaagcccaccaatgggatctgtctcagcacccaacctgcctacagcagaagataacctggaatatgtacggactctgtatgattttcctgggaatgatgccgaagacctgccctttaaaaagggtgagatcctagtgataatagagaagcctgaagaacagtggtggagtgcccggaacaaggatggccgggttgggatgattcctgtcccttatgtcgaaaagcttgtgagatcctcaccacacggaaagcatggaaataggaattccaacagttatgggatcccagaacctgctcatgcatacgctcaacctcagaccacaactcctctacctgcagtttccggttctcctggggcagcaatcacccctttgccatccacacagaatggacctgtctttgcgaaagcaatccagaaaagagtaccctgtgcttatgacaagactgccttggcattagagGCAAAATACATATCTCAGTGCATTGATGAGATCAAGCAGGAGCTGAAGCAGGACAACATAGCGGTGAAGGCGAACGCGGTCTGCAAGCTGACGTATTTACAGATGTTGGGATACGACATCAGCTGGGCCGCCTTCAACATCATAGAAGTGATGAGTGCCTCCAAGTTCACCTTCAAGCGAATTGGCTACCTCGCTGCTTCCCAGAGCTTTCACGAAGGCACCGACGTCATCATGCTGACCACCAATCAGATCCGTAAGGACTTGAGCAGCCCCAGCCAGTACGACACAGGTGTTGCACTGACGGGTCTGTCCTGCTTCGTCACCCCAGACCTTGCCAGAGACCTGGCAAATGACATCATGACACTGATGTCACACACCAAGCCCTACATCAGGAAGAAGGCTGTGCTGATCATGTACAAGGTGTTCCTGAAGTACCCCGAGTCGCTGCGCCCTGCCTTTCCCCGGCTGAAGGAGAAGCTGGAGGACCCCGACCCCGGGGTTCAGTCGGCTGCCGTCAATGTCATCTGCGAGCTGGCCAGACGCAACCCTAAGAACTACCTGTCCCTGGCCCCGCTCTTTTTCAAGCTGATGACGTCCTCCACCAACAACTGGGTCCTCATCAAGATCATCAAGCTGTTCGGTGCTCTTACTCCTTTGGAACCGCGGCTGGGCAAGAAGCTGATCGAGCCCCTCACCAATCTCATCCACAGCACGTCTGCCATGTCTCTCCTCTATGAATGTGTGAACACCGTGATTGCAGTGCTCATCTCGCTGTCCTCCGGCATGCCCAACCACAGCGCCAGCATCCAGCTTTGTGTTCAGAAATTAAGGATATTGATCGAGGACTCCGATCAGAACTTGAAGTACCTGGGGCTGCTGGCAATGTCCAAGATCCTGAAGACCCACCCCAAGTCCGTGCAGTCCCACAAGGACCTCATCCTGCAGTGCCTGGACGACAAGGACGAGTCCATCCGGCTGCGGGCCCTGGACCTGCTCTATGGGATGGTGTCCAAGAAGAACCTGATGGAGATCGTGAAGAAGCTGATGACCCACGTAGACAAGGCAGAGGGTACCACCTACCGTGACGAGCTGCTCACCAAGATCATTGACATCTGCAGCCAGTCCAACTACCAGTACATCACCAACTTCGAGTGGTACATCAGCATCCTGGTGGAGCTGACCCGGCTGGAGGGCACACGGCACGGCCACCTCATCGCCGCCCAAATGCTGGACGTGGCCATCCGCGTGAAGGCCATCCGCAAGTTCGCCGTGTCCCAGATGTCTGCGCTGCTTGACAGTGCACACCTGCTGGCCAGCAGCACCCAGCGGAACGGGATCTGTGAGGTGCTGTACGCTGCCGCCTGGATCTGCGGGGAGTTCTCAGAGCATCTGCAGGAACCACACCACACTTTGGAGGCCATGCTGCGGCCCAGAGTCACCACGCTGCCAGGCCACATCCAGGCCGTGTATGTGCAGAACGTGGTCAAGCTCTACGCCTCCATCCTGCAGCAGAAGGAGCAGGCCGGGGAGGCAGAGGGCGCTCAGGCCGTCACCCAGCTCATGGTGGACCGGCTGCCCCAGTTTGTGCAGAGCGCAGACCTGGAGGTGCAGGAGCGGGCGTCCTGCATCCTGCAGCTGGTCAAGCACATCCAGAAGCTTCAGGCCAAGGACGTGCCTGTGGCAGAGGAGGTCAGCGCTCTCTTTGCTGGGGAGCTGAACCCAGTGGCCCCCAAGGCCCAGAAGAAGGTTCCAGTCCCCGAAGGCCTGGACCTGGACGCCTGGATCAATGAGCCACTCTCGGACAGCGAGTCAGAGGACGAGAGGCCCAGGGCCGTCTTCCACGAGGAGGAGCAGCGGCGTCCCAAGCACCGGCCGTCGGAGGCGGACGAGGAAGAGCTGGCTCGGCGCCGAGAGGCCCGGAAGCAGGAGCAGGCCAACAACCCCTTCTACATCAAGAGCTCGCCATCGCCACAGAAGCGGTACCAGGACACCCCGGGCGTGGAGCACATTCCCGTGGTGCAGATTGACCTCTCCGTCCCCTTGAAGGTTCCAGGGCTGCCTATGTCAGATCAGTATGTGAAGCTGGAGGAGGAGCGGCGGCACCGGCAGAAGCTGGAGAAGGACAAGAGGAGGAAAAAGAGGAAGGAGAAGGAGAAGAAGGGCAAGCGCCGCCACAGCTCGCTGCCCACGGAGAGCGACGAGGACATCGCCCCTGCCCAGCAGGTGGACATCGTCACAGAGGAGATGCCTGAGAATGCTCTGCCCAGCGACGAGGATGACAAAGACCCCAACGACCCCTACAGGGCTCTGGATATTGACCTGGATAAGCCCTTAGCCGACAGCGAGAAACTGCCTATTCAGAAACACAGAAACACCGAGACCTCAAAATCCCCTGAGAAGGACGTTCCCATGGTAGAAAAGAAGAGCAAGAAACCCAAGAAGAAAGAGAAAAAACACAAAGAGAAAGAGAGAGACAAGGAGAAGAAGAAGGAGAAGGAGAAGAAGGCTGAGGACCTGGACTTCTGGCTGTCTACCACCCCACCGCCTGCCCCCGCCCCCGCCCCCGCCCCCGTTCCATCCACGGGGGAGCTCAGTGTGAACACTGTCACTACCCCGAAGGACGAGTGTGAGGACGCCAAGACGGAGGCGCAGGGCGAGGAGGACGATGCCGAGGGGCAAGACCAGGACAAGAAATCTCCCAAGCCTAAGAAGAAGAAGCACAGGAAGGAGAAGGAGGAGCGGACCAAAGGCAAGAAGAAGTCCAAGAAGCAGCCTCCAGGCAGCGAGGAGGCAGCGGGGGAGCCGGTGCAGAATGGCGCGCCAGAGGAGGAGCAGCTCCCGCCTGAGTCCAGCTACTCCCTCCTCGCTGAAAATTCCTATGTTAAAATGACCTGTGACATCCGGGGCAGTCTGCAGGAGGACAGCCAGGTCACTGTGGCCATCGTGCTGGAGAACAGGAGCAGCAGCATCCTCAAGGGCATGGAGCTCAGCGTGCTGGACTCACTCAATGCCAGGATGGCCCGGCCGCAGGGCTCCTCCGTCCACGATGGCGTCCCCGTGCCTTTCCAGCTGCCCCCAGGCGTCTCCAACGAAGCCCAGTATGTGTTCACCATCCAGAGCATCGTCATGGCGCAGAAGCTCAAGGGGACCCTGTCCTTCATTGCCAAGAATGACGAGGGTGCGACCCACGAGAAGCTGGACTTCAGGCTGCACTTCAGCTGCAGCTCCTACTTGATCACCACTCCCTGCTACAGTGACGCCTTTGCTAAGTTGCTGGAGTCTGGGGACTTGAGCATGAGCTCAATCAAAGTCGATGGCATTCGGATGTCCTTCCAGAATCTTCTGGCGAAGATCTGTTTTCACCACCATTTTTCCGTTGTGGAGCGAGTGGACTCCTGCGCCTCCATGTACAGCCGCTCCATCCAGGGCCACCATGTCTGCCTCCTGGTGAAAAAGGGTGAGAACTCTGTCTCAGTCGACGGGAAGTGCAGTGACTCCACGCTACTGAGCAACTTGTTAGAAGAGATGAAGGCGACGCTGGCCAAGTGTTGA MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEAKYISQCIDEIKQELKQDNIAVKANAVCKLTYLQMLGYDISWAAFNIIEVMSASKFTFKRIGYLAASQSFHEGTDVIMLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMSLLYECVNTVIAVLISLSSGMPNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDESIRLRALDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITNFEWYISILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLLASSTQRNGICEVLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQAGEAEGAQAVTQLMVDRLPQFVQSADLEVQERASCILQLVKHIQKLQAKDVPVAEEVSALFAGELNPVAPKAQKKVPVPEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKKSKKPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTGELSVNTVTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKSKKQPPGSEEAAGEPVQNGAPEEEQLPPESSYSLLAENSYVKMTCDIRGSLQEDSQVTVAIVLENRSSSILKGMELSVLDSLNARMARPQGSSVHDGVPVPFQLPPGVSNEAQYVFTIQSIVMAQKLKGTLSFIAKNDEGATHEKLDFRLHFSCSSYLITTPCYSDAFAKLLESGDLSMSSIKVDGIRMSFQNLLAKICFHHHFSVVERVDSCASMYSRSIQGHHVCLLVKKGENSVSVDGKCSDSTLLSNLLEEMKATLAKC* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32412 TUBA1C::ENDOV ENSG00000167553.17::ENSG00000173818.17 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1942 FALSE NA FALSE NA TUBA1C ENSG00000167553.17 protein_coding + + chr12:49188736-49274600:+ chr12:49265184:+ chr12:49582519-49668383:+ chr12:49658967:+ ENDOV ENSG00000173818.17 protein_coding + + chr17:80415165-80438086:+ chr17:80422206:+ chr17:78388965-78411886:+ chr17:78396006:+ chr12:49269367,chr12:49269368 chr17:80415742,chr17:80415740 NA NA chr12:49663150,chr12:49663151 chr17:78389542,chr17:78389540 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Endonuclease_5-PARTIAL|~115-168|8.2e-48^DUF99|133-173|6.9e-05^TMIE|147-167|1.2e-05 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr17] 56 4 56 4 ONLY_REF_SPLICE YES_LDAS 1.2466 GT 1.9656 AG 1.7465 ENST00000301072.11 1-3 ENST00000517295.6 115-711 chr12|+|[0]49265182-49265184[2]<==>chr17|+|[0]80422206-80422245[0]|[1]80423520-80423632[2]|[0]80425032-80425100[2]|[0]80425459-80425620[2]|[0]80428596-80428660[1]|[2]80429773-80429831[0]|[1]80430041-80430129[2] atgGTCCTTCTTGTGGATGGAAACGGGGTACTCCACCACCGAGGCTTTGGGGTGGCCTGCCACCTTGGCGTCCTTACAGACCTGCCGTGTGTTGGGGTGGCCAAGAAACTTCTGCAGGTGGATGGGCTGGAGAACAACGCCCTGCACAAGGAGAAGATCCGACTCCTGCAGACTCGAGGAGACTCATTCCCTCTGCTGGGAGACTCTGGGACTGTCCTGGGAATGCCCACAGGACAGCCCTCGCCTTCCTTGTCACAGGCCCTGAGGAGCCACGACCGCAGCACCAGGCCCCTCTACATCTCCGTGGGCCACAGGATGAGCCTGGAGGCCGCTGTGCGCCTGACTTGCTGCTGCTGCAGGTTCCGGATCCCAGAGCCCGTGCGCCAGGCTGACATCTGCTCCCGAGAGCACATCCGCAAGTCGCTGGGACTCCCCGGGCCACCCACACCGAGGAGCCCGAAGGCGCAGAGGCCAGTGGCATGCCCCAAAGGAGACTCCGGAGAGTCCTCAGGTGGAGCACCCAGTCCCCAAAGACAGGCTGACCGCACCACCCCAGGGGGACGCCGCAGCACAGCCCAGCACCAGGTGGGGCAGAGGTGA MVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKEKIRLLQTRGDSFPLLGDSGTVLGMPTGQPSPSLSQALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGGAPSPQRQADRTTPGGRRSTAQHQVGQR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32413 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1943 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44343377:+ chr20:42965683-42979878:+ chr20:42972017:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C4-PARTIAL|37-49~|8.8e-34 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.00Mb];LOCAL_REARRANGEMENT:+:[4465] 19 29 19 18.25 ONLY_REF_SPLICE YES_LDAS 0.7739 GT 1.9086 AG 1.9329 ENST00000609795.5 1-49 ENST00000217043.4 381-762 chr20|+|[0]44355805-44355853[0]<==>chr20|+|[2]44343377-44343509[2]|[0]44345263-44345378[1]|[2]44350660-44350792[2] atggtcagcgtgaacgcgcccctcggggctccagtggagagttcttacgGTACCGGTCCGTAGTGGATCTCATGAAGTCCTGGTCTGAGGAGAAGTGGCATTACTTGTTTCCGGCCCCAAGGGACTGTAACCCACACTGCCCCTGGCGCTGCGATGGCCCCACCTGCTCCCATTATACCCAGATGGTGTGGGCATCCTCCAATCGGCTGGGCTGTGCCATCCACACCTGTAGTAGCATCAGTGTCTGGGGCAACACCTGGCATCGGGCGGCATACCTGGTCTGCAACTATGCCATTAAGGGCAACTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCAGTTATCAAGGCAGCTGCAATAGCAACATGTGCTTCAAGGGGCTGAAATCCAACAAGTTCACGTGGTTCTGA MVSVNAPLGAPVESSYGTGP*WIS*SPGLRRSGITCFRPQGTVTHTAPGAAMAPPAPIIPRWCGHPPIGWAVPSTPVVASVSGATPGIGRHTWSATMPLRATGLASPRTRWESRAPPVPPVIKAAAIATCASRG*NPTSSRGS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32414 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1945 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44350660:+ chr20:42965683-42979878:+ chr20:42979300:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C4-PARTIAL|37-49~|8.8e-34 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.00Mb];LOCAL_REARRANGEMENT:+:[4465] 15 11 15 2.46 ONLY_REF_SPLICE YES_LDAS 0.3627 GT 1.9086 AG 1.8295 ENST00000609795.5 1-49 ENST00000217043.4 630-762 chr20|+|[0]44355805-44355853[0]<==>chr20|+|[2]44350660-44350792[2] atggtcagcgtgaacgcgcccctcggggctccagtggagagttcttacgGGGCAACTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCAGTTATCAAGGCAGCTGCAATAGCAACATGTGCTTCAAGGGGCTGAAATCCAACAAGTTCACGTGGTTCTGA MVSVNAPLGAPVESSYGATGLASPRTRWESRAPPVPPVIKAAAIATCASRG*NPTSSRGS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32415 HNF4A::R3HDML ENSG00000101076.20::ENSG00000101074.5 SUIT2 SRR8616011 SRR8670709 PANCREAS carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 1944 TRUE 3583 TRUE 1350 HNF4A ENSG00000101076.20 protein_coding + + chr20:44355699-44432845:+ chr20:44355853:+ chr20:42984339-43061485:+ chr20:42984493:+ R3HDML ENSG00000101074.5 protein_coding + + chr20:44337043-44351238:+ chr20:44345263:+ chr20:42965683-42979878:+ chr20:42973903:+ chr20:44361602,chr20:44361525 chr20:44341692,chr20:44341612 NA NA chr20:42990242,chr20:42990165 chr20:42970332,chr20:42970252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-C4-PARTIAL|37-49~|8.8e-34 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.00Mb];LOCAL_REARRANGEMENT:+:[4465] 15 24 15 8.29 ONLY_REF_SPLICE YES_LDAS 0.4838 GT 1.9086 AG 1.8892 ENST00000609795.5 1-49 ENST00000217043.4 514-762 chr20|+|[0]44355805-44355853[0]<==>chr20|+|[0]44345263-44345378[1]|[2]44350660-44350792[2] atggtcagcgtgaacgcgcccctcggggctccagtggagagttcttacgATGGTGTGGGCATCCTCCAATCGGCTGGGCTGTGCCATCCACACCTGTAGTAGCATCAGTGTCTGGGGCAACACCTGGCATCGGGCGGCATACCTGGTCTGCAACTATGCCATTAAGGGCAACTGGATTGGCGAGTCCCCGTACAAGATGGGAAAGCCGTGCTCCTCCTGTCCCCCCAGTTATCAAGGCAGCTGCAATAGCAACATGTGCTTCAAGGGGCTGAAATCCAACAAGTTCACGTGGTTCTGA MVSVNAPLGAPVESSYDGVGILQSAGLCHPHL**HQCLGQHLASGGIPGLQLCH*GQLDWRVPVQDGKAVLLLSPQLSRQLQ*QHVLQGAEIQQVHVVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32419 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1948 TRUE 3587 TRUE 1353 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30773497:- chr17:29096406-29151710:- chr17:29100515:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 13 17 6.91 ONLY_REF_SPLICE YES_LDAS 0.3065 GT 1.6402 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32423 ENSG00000290928::CRLF3 ENSG00000290928.1::ENSG00000176390.12 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1949 TRUE 3587 TRUE 1353 ENSG00000290928 ENSG00000290928.1 lncRNA + + chr17:30709299-30790908:+ chr17:30769965:+ chr17:29036317-29117926:+ chr17:29096983:+ CRLF3 ENSG00000176390.12 protein_coding - - chr17:30769388-30824692:- chr17:30774344:- chr17:29096406-29151710:- chr17:29101362:- chr17:30770915,chr17:30770858 chr17:30775693,chr17:30775750 NA NA chr17:29097933,chr17:29097876 chr17:29102711,chr17:29102768 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 16 12 9.09 ONLY_REF_SPLICE YES_LDAS 0.2703 GT 1.6402 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32425 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85496166:- chr1:85947964-86043933:- chr1:85961849:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 11 12 11 10.91 ONLY_REF_SPLICE YES_LDAS 0.2809 GT 1.5628 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32431 SORBS1::TCTN3 ENSG00000095637.23::ENSG00000119977.22 A704 SRR8616013 SRR8639172 KIDNEY carcinoma (renal_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1947 FALSE NA FALSE NA SORBS1 ENSG00000095637.23 protein_coding - - chr10:95311771-95561414:- chr10:95561320:- chr10:97071528-97321171:- chr10:97321077:- TCTN3 ENSG00000119977.22 protein_coding - - chr10:95659823-95694143:- chr10:95683629:- chr10:97419580-97453900:- chr10:97443386:- chr10:95550412,chr10:95550414 chr10:95683808,chr10:95683807 NA NA chr10:97310169,chr10:97310171 chr10:97443565,chr10:97443564 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.10Mb] 7 2 7 2 ONLY_REF_SPLICE YES_LDAS 0.1153 GT 1.5656 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32437 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22127103:+ chr9:21994138-22128102:+ chr9:22127102:+ chr9:21907456,chr9:21907157,chr9:21907158,chr9:21907159,chr9:21907161,chr9:21907165,chr9:21907170,chr9:21907171,chr9:21907172,chr9:21907175,chr9:21907179,chr9:21907185,chr9:21907187,chr9:21907193,chr9:21907195,chr9:21907196,chr9:21907200,chr9:21907209,chr9:21907138,chr9:21907140,chr9:21907141,chr9:21907151,chr9:21907153 chr9:22123037,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317,chr9:22123317 NA NA chr9:21907455,chr9:21907156,chr9:21907157,chr9:21907158,chr9:21907160,chr9:21907164,chr9:21907169,chr9:21907170,chr9:21907171,chr9:21907174,chr9:21907178,chr9:21907184,chr9:21907186,chr9:21907192,chr9:21907194,chr9:21907195,chr9:21907199,chr9:21907208,chr9:21907137,chr9:21907139,chr9:21907140,chr9:21907150,chr9:21907152 chr9:22123036,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316,chr9:22123316 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 103 79 103 79 ONLY_REF_SPLICE YES_LDAS 1.9738 GT 1.9656 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32438 RICTOR::FYB1 ENSG00000164327.14::ENSG00000082074.19 A549 SRR8616017 SRR8639173 LUNG carcinoma (non_small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 1950 FALSE NA FALSE NA RICTOR ENSG00000164327.14 protein_coding - - chr5:38937920-39074402:- chr5:39074111:- chr5:38938022-39074504:- chr5:39074213:- FYB1 ENSG00000082074.19 protein_coding - - chr5:39105252-39274528:- chr5:39141141:- chr5:39105354-39274630:- chr5:39141243:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RICTOR_N-PARTIAL|58-97~|6e-110^RICTOR_M-PARTIAL|87-97~|2.5^RasGEF_N_2-PARTIAL|92-97~|0.18 none ["RICTOR:ArcherDX_panel","RICTOR:FoundationOne_panel"];["TCGA_StarF2019","CCLE_StarF2019"] 82 31 82 31 ONLY_REF_SPLICE YES_LDAS 1.2255 GT 1.9656 AG 1.9656 ENST00000357387.8 1-97 ENST00000646045.2 1323-2520 chr5|-|[0]39074111-39074158[1]|[0]39074329-39074377[0]<==>chr5|-|[2]39107443-39107465[1]|[0]39108231-39108262[2]|[1]39110356-39110389[1]|[0]39118874-39119036[0]|[2]39119535-39119634[2]|[1]39122336-39122402[1]|[0]39124253-39124278[2]|[1]39125998-39126135[2]|[1]39127741-39127807[1]|[0]39130590-39130612[2]|[1]39134208-39134349[1]|[0]39134855-39135014[0]|[2]39137600-39137720[2]|[1]39138657-39138691[0]|[2]39139233-39139252[1]|[0]39141095-39141141[2] atggcggcgatcggccgcggccgctctctgaagaacctccgagtacgagggcggaatgacagcggcgaggagaacgtcccgctggatctgacccgagAAGCCCTGTCAATGAAGACAATCAAGATGGTGTCACGCACTCTGATGGTGCTGGAAATCTAGATGAGGAACAAGACAGTGAAGGAGAAACATATGAAGACATAGAAGCATCCAAAGAAAGAGAGAAGAAAAGGGAAAAGGAAGAAAAGAAGAGGTTAGAGCTGGAGAAAAAGGAACAGAAAGAGAAAGAAAAGAAAGAACAAGAAATAAAGAAGAAATTTAAACTAACAGGCCCTATTCAAGTCATCCATCTTGCAAAAGCTTGTTGTGATGTCAAAGGAGGAAAGAATGAACTGAGCTTCAAGCAAGGAGAGCAAATTGAAATCATCCGCATCACAGACAACCCAGAAGGAAAATGGTTGGGCAGAACAGCAAGGGGTTCATATGGCTATATTAAAACAACTGCTGTAGAGATTGACTATGATTCTTTGAAACTGAAAAAAGACTCTCTTGGTGCCCCTTCAAGACCTATTGAAGATGACCAAGAAGTATATGATGATGTTGCAGAGCAGGATGATATTAGCAGCCACAGTCAGAGTGGAAGTGGAGGGATATTCCCTCCACCACCAGATGATGACATTTATGATGGGATTGAAGAGGAAGATGCTGATGATGGCTCCACACTACAGGTTCAAGAGAAGAGTAATACGTGGTCCTGGGGGATTTTGAAGATGTTAAAGGGAAAAGATGACAGAAAGAAAAGTATACGAGAGAAACCTAAAGTCTCTGACTCAGACAATAATGAAGGTTCATCTTTCCCTGCTCCTCCTAAACAATTGGACATGGGAGATGAAGTTTACGATGATGTGGATACCTCTGATTTCCCTGTTTCATCAGCAGAGATGAGTCAAGGAACTAATGTTGGAAAAGCTAAGACAGAAGAAAAGGACCTTAAGAAGCTAAAAAAGCAGGAAAAAGAAGAAAAAGACTTCAGGAAAAAATTTAAATATGATGGTGAAATTAGAGTCCTATATTCAACTAAAGTTACAACTTCCATAACTTCTAAAAAGTGGGGAACCAGAGATCTACAGGTAAAACCTGGTGAATCTCTAGAAGTTATACAAACCACAGATGACACAAAAGTTCTCTGCAGAAATGAAGAAGGGAAATATGGTTATGTCCTTCGGAGTTACCTAGCGGACAATGATGGAGAGATCTATGATGATATTGCTGATGGCTGCATCTATGACAATGACTAG MAAIGRGRSLKNLRVRGRNDSGEENVPLDLTREALSMKTIKMVSRTLMVLEI*MRNKTVKEKHMKT*KHPKKERRKGKRKKRRG*SWRKRNRKRKKRKNKK*RRNLN*QALFKSSILQKLVVMSKEERMN*ASSKESKLKSSASQTTQKENGWAEQQGVHMAILKQLL*RLTMIL*N*KKTLLVPLQDLLKMTKKYMMMLQSRMILAATVRVEVEGYSLHHQMMTFMMGLKRKMLMMAPHYRFKRRVIRGPGGF*RC*REKMTERKVYERNLKSLTQTIMKVHLSLLLLNNWTWEMKFTMMWIPLISLFHQQR*VKELMLEKLRQKKRTLRS*KSRKKKKKTSGKNLNMMVKLESYIQLKLQLP*LLKSGEPEIYR*NLVNL*KLYKPQMTQKFSAEMKKGNMVMSFGVT*RTMMERSMMILLMAASMTMT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Rapamycin-Insensitive Companion of mTOR 1 lung SCC epithelial oncogene amplification FALSE NA NA NA NA NA NA NA NA NA 32458 ST3GAL2::COG4 ENSG00000157350.13::ENSG00000103051.21 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1960 FALSE NA FALSE NA ST3GAL2 ENSG00000157350.13 protein_coding - - chr16:70375977-70439237:- chr16:70438949:- chr16:70409880-70473140:- chr16:70472852:- COG4 ENSG00000103051.21 protein_coding - - chr16:70480568-70523560:- chr16:70519731:- chr16:70514471-70557463:- chr16:70553634:- chr16:70438515 chr16:70521770 NA NA chr16:70472418 chr16:70555673 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.04Mb];LOCAL_REARRANGEMENT:-:[41331] 34 0 34 0 ONLY_REF_SPLICE YES_LDAS 0.4431 GT 1.7968 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma,Esophageal carcinoma OVARY,OESOPHAGUS no_match 70422270,70472852 FALSE,TRUE 70534994,70517872 FALSE,FALSE YES,YES In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32460 ELOVL5::KLHL31 ENSG00000012660.14::ENSG00000124743.6 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1957 FALSE NA FALSE NA ELOVL5 ENSG00000012660.14 protein_coding - - chr6:53267398-53349179:- chr6:53348817:- chr6:53132196-53213977:- chr6:53213615:- KLHL31 ENSG00000124743.6 protein_coding - - chr6:53647916-53665756:- chr6:53652330:- chr6:53512714-53530554:- chr6:53517128:- chr6:53312708,chr6:53312710 chr6:53652587,chr6:53652586 NA NA chr6:53177506,chr6:53177508 chr6:53517385,chr6:53517384 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ELOVL5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.30Mb] 21 29 21 29 ONLY_REF_SPLICE YES_LDAS 0.6516 GT 1.9899 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32467 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1955 TRUE 3611 TRUE 1358 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72592203:- chr17:70286232-70636611:- chr17:70588342:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72553717 chr17:72654559 NA NA chr17:70549857 chr17:70650698 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[5477] 9 33 9 18.27 ONLY_REF_SPLICE YES_LDAS 0.3554 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32469 MAP2K2::EEF2 ENSG00000126934.15::ENSG00000167658.16 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MAP2K2 ENSG00000126934.15 protein_coding - - chr19:4090321-4124122:- chr19:4094453:- chr19:4090319-4124119:- chr19:4094451:- EEF2 ENSG00000167658.16 protein_coding - - chr19:3976056-3985463:- chr19:3978007:- chr19:3976054-3985461:- chr19:3978005:- chr19:4093780 chr19:3978112 NA NA chr19:4093778 chr19:3978110 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CAMSAP_CC1|23-61|4.7e-05^Kdo|28-58|0.18^Pkinase|72-369|4.2e-65^PK_Tyr_Ser-Thr|75-274|3.7e-36^ABC1|145-222|9e-11^Kdo|145-213|0.00019^Kinase-like|164-261|4.3e-06^Pkinase_fungal|176-251|6.1e-09^Seadorna_VP7|178-213|3.4e-05^Haspin_kinase|181-216|1e-05^APH|184-207|0.00015^PK_Tyr_Ser-Thr|314-365|0.049 none ["MAP2K2:ArcherDX_panel","MAP2K2:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.10Mb] 7 4 7 1.27 INCL_NON_REF_SPLICE YES_LDAS 0.1077 GT 1.9656 AG 1.8062 ENST00000262948.10 1-1092 ENST00000309311.7 1879-2577 chr19|-|[2]4094453-4094498[2]|[1]4095388-4095449[0]|[2]4097279-4097343[1]|[0]4099201-4099414[0]|[2]4101019-4101143[1]|[0]4101229-4101280[0]|[2]4102376-4102453[0]|[2]4110509-4110655[0]|[2]4117419-4117629[2]|[1]4123784-4123875[0]<==>chr19|-|[2]3976554-3976747[1]|[0]3977215-3977347[0]|[2]3977428-3977610[0]|[2]3977819-3978007[0] atgctggcccggaggaagccggtgctgccggcgctcaccatcaaccctaccatcgccgagggcccatcccctaccagcgagggcgcctccgaggcaaacctggtggacctgcagaagaagctggaggagctggaacttgacgagcagcagaagaagcggctggaagcctttctcacccagaaagccaaggtcggcgaactcaaagacgatgacttcgaaaggatctcagagctgggcgcgggcaacggcggggtggtcaccaaagtccagcacagaccctcgggcctcatcatggccaggaagctgatccaccttgagatcaagccggccatccggaaccagatcatccgcgagctgcaggtcctgcacgaatgcaactcgccgtacatcgtgggcttctacggggccttctacagtgacggggagatcagcatttgcatggaacacatggacggcggctccctggaccaggtgctgaaagaggccaagaggattcccgaggagatcctggggaaagtcagcatcgcggttctccggggcttggcgtacctccgagagaagcaccagatcatgcaccgagatgtgaagccctccaacatcctcgtgaactctagaggggagatcaagctgtgtgacttcggggtgagcggccagctcatcgactccatggccaactccttcgtgggcacgcgctcctacatggctccggagcggttgcagggcacacattactcggtgcagtcggacatctggagcatgggcctgtccctggtggagctggccgtcggaaggtaccccatccccccgcccgacgccaaagagctggaggccatctttggccggcccgtggtcgacggggaagaaggagagcctcacagcatctcgcctcggccgaggccccccgggcgccccgtcagcggtcacgggatggatagccggcctgccatggccatctttgaactcctggactatattgtgaacgagccacctcctaagctgcccaacggtgtgttcacccccgacttccaggagtttgtcaataaatgcctcatcaagaacccagcggagcgggcggacctgaagatgctcacaGAGCTCAAGCAGCGGGCGCGCTACCTGGCCGAGAAGTACGAGTGGGACGTGGCTGAGGCCCGCAAGATCTGGTGCTTTGGGCCCGACGGCACCGGCCCCAACATCCTCACCGACATCACCAAGGGTGTGCAGTACCTCAACGAGATCAAGGACAGTGTGGTGGCCGGCTTCCAGTGGGCCACCAAGGAGGGCGCACTGTGTGAGGAGAACATGCGGGGTGTGCGCTTCGACGTCCACGACGTCACCCTGCACGCCGACGCCATCCACCGCGGAGGGGGCCAGATCATCCCCACAGCACGGCGCTGCCTCTATGCCAGTGTGCTGACCGCCCAGCCACGCCTCATGGAGCCCATCTACCTTGTGGAGATCCAGTGTCCAGAGCAGGTGGTCGGTGGCATCTACGGGGTTTTGAACAGGAAGCGGGGCCACGTGTTCGAGGAGTCCCAGGTGGCCGGCACCCCCATGTTTGTGGTCAAGGCCTATCTGCCCGTCAACGAGTCCTTTGGCTTCACCGCTGACCTGAGGTCCAACACGGGCGGCCAGGCGTTCCCCCAGTGTGTGTTTGACCACTGGCAGATCCTGCCCGGAGACCCCTTCGACAACAGCAGCCGCCCCAGCCAGGTGGTGGCGGAGACCCGCAAGCGCAAGGGCCTGAAAGAAGGCATCCCTGCCCTGGACAACTTCCTGGACAAATTGTAG MLARRKPVLPALTINPTIAEGPSPTSEGASEANLVDLQKKLEELELDEQQKKRLEAFLTQKAKVGELKDDDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLTELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Dual specificity mitogen-activated protein kinase kinase 2 STE STE7 P36507 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE mitogen-activated protein kinase kinase 2 1 Yes NSCLC, melanoma epithelial oncogene missense FALSE NA NA NA NA NA NA NA NA NA 32477 LINC00511::SLC39A11 ENSG00000227036.10::ENSG00000133195.12 A375 SRR8616020 SRR8639175 SKIN malignant_melanoma primary star-fusion TRUE TRUE TRUE 1956 TRUE 3611 TRUE 1358 LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72583044:- chr17:70286232-70636611:- chr17:70579183:- SLC39A11 ENSG00000133195.12 protein_coding - - chr17:72645949-73092712:- chr17:72649268:- chr17:70642088-71088851:- chr17:70645407:- chr17:72553717 chr17:72654559 NA NA chr17:70549857 chr17:70650698 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[5477] 3 37 3 18.21 ONLY_REF_SPLICE YES_LDAS 0.2764 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32481 RPS15::DAZAP1 ENSG00000115268.10::ENSG00000071626.17 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RPS15 ENSG00000115268.10 protein_coding + + chr19:1438358-1440495:+ chr19:1438892:+ chr19:1438357-1440494:+ chr19:1438891:+ DAZAP1 ENSG00000071626.17 protein_coding + + chr19:1407569-1435687:+ chr19:1422348:+ chr19:1407568-1435686:+ chr19:1422347:+ chr19:1439244,chr19:1439244,chr19:1439232,chr19:1439239 chr19:1422114,chr19:1422118,chr19:1422099,chr19:1422109 NA NA chr19:1439243,chr19:1439243,chr19:1439231,chr19:1439238 chr19:1422113,chr19:1422117,chr19:1422098,chr19:1422108 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame LCAT|16-72|1.6e-05^Ribosomal_S19-PARTIAL|50-110~|2.3e-41 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.00Mb];LOCAL_REARRANGEMENT:+:[2671] 496 58 484.09 57.88 ONLY_REF_SPLICE YES_LDAS 5.9123 GT 1.9899 AG 1.9219 ENST00000593052.5 1-110 ENST00000233078.9 415-1224 chr19|+|[0]1438557-1438580[2]|[0]1438807-1438892[1]<==>chr19|+|[0]1422348-1422396[0]|[1]1425878-1425960[2]|[0]1428842-1428995[0]|[1]1429967-1429996[0]|[1]1430222-1430362[0]|[1]1432514-1432690[0]|[1]1434737-1434912[2] atgttggggcgaggggcggacttggcagaagtagagcagaagaagaagcggaccttccgcaagttcacctaccgcggcgtggacctcgaccagctgctggacatgtcctaGTCACGGAGGTAGTCATGATCTATGACGCCGAGAAGCAGAGGCCCCGAGGTTTTGGATTTATTACTTTCGAGGACGAACAATCAGTGGACCAGGCTGTCAACATGCATTTTCACGACATCATGGGCAAAAAAGTGGAAGTTAAACGAGCTGAGCCTCGGGACAGCAAGAGCCAAGCGCCGGGACAGCCAGGTGCCAGCCAGTGGGGGAGCCGGGTTGTGCCCAACGCTGCCAATGGCTGGGCAGGCCAGCCCCCGCCCACGTGGCAGCAAGGATATGGCCCGCAAGGAATGTGGGTGCCGGCAGGACAGGCGATTGGTGGCTATGGACCGCCCCCTGCAGGAAGAGGAGCCCCCCCGCCACCCCCACCGTTCACCTCCTACATCGTGTCCACCCCTCCTGGAGGCTTTCCCCCTCCCCAGGGCTTCCCTCAGGGCTACGGTGCCCCGCCACAGTTCAGTTTTGGCTACGGGCCTCCACCTCCACCGCCAGATCAGTTTGCCCCTCCGGGGGTTCCTCCTCCACCAGCCACTCCCGGGGCAGCACCTCTGGCTTTCCCACCGCCTCCGTCTCAGGCTGCCCCGGACATGAGCAAGCCCCCGACAGCTCAGCCAGACTTCCCCTATGGTCAGTATGCAGGTTACGGGCAGGACTTGAGTGGCTTCGGACAGGGCTTCTCAGACCCCAGCCAGCAGCCTCCTTCCTACGGGGGTCCCTCCGTGCCAGGGTCGGGGGGCCCCCCCGCCGGCGGCAGCGGCTTTGGACGAGGGCAGAACCACAACGTGCAAGGGTTCCACCCCTACCGACGCTAG MLGRGADLAEVEQKKKRTFRKFTYRGVDLDQLLDMS*SRR*S*SMTPRSRGPEVLDLLLSRTNNQWTRLSTCIFTTSWAKKWKLNELSLGTARAKRRDSQVPASGGAGLCPTLPMAGQASPRPRGSKDMARKECGCRQDRRLVAMDRPLQEEEPPRHPHRSPPTSCPPLLEAFPLPRASLRATVPRHSSVLATGLHLHRQISLPLRGFLLHQPLPGQHLWLSHRLRLRLPRT*ASPRQLSQTSPMVSMQVTGRT*VASDRASQTPASSLLPTGVPPCQGRGAPPPAAAALDEGRTTTCKGSTPTDA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32482 EFNA4::RUSC1 ENSG00000243364.8::ENSG00000160753.17 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1961 FALSE NA FALSE NA EFNA4 ENSG00000243364.8 protein_coding + + chr1:155063737-155069553:+ chr1:155067440:+ chr1:155036213-155042029:+ chr1:155039916:+ RUSC1 ENSG00000160753.17 protein_coding + + chr1:155320894-155331114:+ chr1:155324845:+ chr1:155290685-155300905:+ chr1:155294636:+ chr1:155068263,chr1:155068573,chr1:155068261 chr1:155324485,chr1:155324485,chr1:155324479 NA NA chr1:155040739,chr1:155041049,chr1:155040737 chr1:155294276,chr1:155294276,chr1:155294270 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ephrin|25-151|8.1e-46 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.25Mb] 193 69 193 69 ONLY_REF_SPLICE YES_LDAS 2.8581 GT 1.6895 AG 1.7819 ENST00000359751.8 1-469 ENST00000368352.10 1358-2709 chr1|+|[0]155063824-155063936[1]|[2]155066730-155067016[0]|[1]155067372-155067440[0]<==>chr1|+|[1]155324845-155324943[0]|[1]155325102-155325178[2]|[0]155325316-155325490[0]|[1]155325567-155325672[1]|[2]155325864-155325910[0]|[1]155326580-155327132[1]|[2]155328150-155328275[1]|[2]155330403-155330571[2] atgcggctgctgcccctgctgcggactgtcctctgggccgcgttcctcggctcccctctgcgcgggggctccagcctccgccacgtagtctactggaactccagtaaccccaggttgcttcgaggagacgccgtggtggagctgggcctcaacgattacctagacattgtctgcccccactacgaaggcccagggccccctgagggccccgagacgtttgctttgtacatggtggactggccaggctatgagtcctgccaggcagagggcccccgggcctacaagcgctgggtgtgctccctgccctttggccatgttcaattctcagagaagattcagcgcttcacacccttctccctcggctttgagttcttacctggagagacttactactacatctcggtgcccactccagagagttctggccagtgcttgaggctccaggtgtctgtctgctgcaaggagaggaTCCGTAGTTCGTGGTCCTTCGCCGGTGTCCCCGGAGCCCAGCGGCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTTCTGATAGCCGTCAGCGTCTCCGTTGATAAAATCATCTCGCATTTCGGGGCCGCCCGGAACTTGGTGCAGAAGGCCCAGTTGGGTGATAGCCGGCTGAGCCCGGATGTGGGGCACCTGGTGCTGACCACCCTCTGCCCGGCCCTCCACGCCCTGGTGGCGGACGGGCTGAAGCCTTTCCGGAAGGACCTCATCACCGGGCAGCGCAGGAGCAGCCCCTGGAGCGTGGTGGAGGCGTCGGTGAAGCCAGGCTCCAGCACCCGCTCCCTTGGAACCCTGTATAGCCAGGTCAGCCGTCTAGCCCCGCTGAGCAGCAGCCGTAGCCGCTTCCATGCCTTTATCCTGGGCCTCCTCAACACCAAGCAGTTGGAGCTGTGGTTTTCCAGTCTCCAGGAAGATGCAGGCCTGCTCTCCCTCCTGTACCTGCCAACAGGATTTTTCTCCCTGGCCCGCGGTGGTTGTCCCTCCCTGTCCACAGAGCTGCTGCTCCTGCTGCAGCCATTGTCGGTGCTCACTTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGCCCACCTCAGGCCCCTGCCCCTCCAGGCCCACCTCCAGCTCTGCAGCAGACTATGCAAGCCATGCTGCACTTTGGGGGCCGGCTGGCCCAGAGCCTTCGGGGGACTTCCAAGGAAGCTGCTTCAGACCCCTCTGACTCTCCAAACCTTCCCACACCAGGGAGCTGGTGGGAGCAGTTGACCCAGGCCTCCCGGGTCTATGCCTCTGGGGGCACTGAGGGCTTTCCTCTTTCCCGATGGGCACCGGGGCGTCATGGGACTGCAGCTGAAGAAGGTGCACAGGAGAGACCCCTGCCCACAGATGAGATGGCACCAGGCAGGGGCCTCTGGTTGGGAAGACTATTTGGAGTGCCTGGGGGCCCCGCAGAAAATGAGAATGGAGCCCTAAAGTCCAGGAGACCATCTAGCTGGCTGCCCCCGACAGTGAGTGTGTTGGCTCTTGTGAAGCGGGGGGCACCTCCCGAGATGCCTTCTCCTCAGGAGCTTGAGGCCTCAGCACCCAGGATGGTGCAAACCCATAGGGCAGTGCGGGCTCTCTGTGATCACACTGCTGCAAGACCTGACCAGTTGAGCTTCCGGCGTGGGGAAGTGCTGCGTGTCATCACCACAGTGGATGAGGACTGGCTCCGCTGTGGGCGGGATGGCATGGAGGGTCTGGTGCCTGTGGGGTATACCTCCCTTGTTCTGTAG MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERIRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIAVSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSPWSVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPTGFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGGRLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQERPLPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAPRMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32483 NCK1::IL20RB ENSG00000158092.7::ENSG00000174564.13 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4873 TRUE 1801 NCK1 ENSG00000158092.7 protein_coding + + chr3:136862208-136951606:+ chr3:136862319:+ chr3:136581050-136670448:+ chr3:136581161:+ IL20RB ENSG00000174564.13 protein_coding + + chr3:136946230-137011085:+ chr3:136989441:+ chr3:136665072-136729927:+ chr3:136708283:+ chr3:136876812,chr3:136876809 chr3:136983810,chr3:136983804 NA NA chr3:136595654,chr3:136595651 chr3:136702652,chr3:136702646 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCK1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS_OVERLAP:+:+:[3593] 103 6 103 4.79 ONLY_REF_SPLICE YES_LDAS 1.1759 GT 1.8892 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32484 ZFYVE28::POLN ENSG00000159733.14::ENSG00000130997.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1963 FALSE NA FALSE NA ZFYVE28 ENSG00000159733.14 protein_coding - - chr4:2269582-2418651:- chr4:2353933:- chr4:2271309-2420378:- chr4:2355660:- POLN ENSG00000130997.16 protein_coding - - chr4:2071918-2242121:- chr4:2095933:- chr4:2073645-2243848:- chr4:2097660:- chr4:2343952,chr4:2343957 chr4:2108474,chr4:2108476 NA NA chr4:2345679,chr4:2345684 chr4:2110201,chr4:2110203 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame 7TMR-HDED|50-162|0.0006 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.03Mb];NEIGHBORS[27461] 98 26 98 26 ONLY_REF_SPLICE YES_LDAS 1.3527 GT 1.7819 AG 1.9219 ENST00000290974.7 1-180 ENST00000382865.5 1983-2703 chr4|-|[2]2353933-2354073[0]|[2]2418285-2418323[0]<==>chr4|-|[2]2072114-2072299[0]|[2]2072968-2073029[1]|[0]2075452-2075519[2]|[1]2080958-2081036[1]|[0]2081633-2081743[1]|[0]2085613-2085744[1]|[0]2095851-2095933[2] atgatgaacaggttccgaaagtggctctacaaacccaagaggtcggatccgcagctgcttgcccggttctactatgccgacgaggagctgaaccaggtggccgcggagctggacagcctggatgggcggaaggacccccagcggtgcacgctgctggtcagccagttccgctcctgtcagGAAGGATGTGCCCGTGGAACAGGTGACACACGCAGACAGAGAGCAAACCAAGAAGGTGGTGTACGCGGTGGTCTATGGAGCAGGGAAGGAGCGGCTGGCTGCTTGCCTTGGAGTTCCTATTCAGGAAGCTGCCCAGTTTTTGGAGAGTTTTTTGCAGAAGTACAAGAAAATCAAGGACTTCGCCCGAGCAGCTATTGCCCAGTGTCACCAGACAGGCTGTGTGGTGTCCATCATGGGCAGAAGGAGACCCCTGCCAAGGATTCACGCTCATGACCAGCAACTCCGGGCACAAGCAGAGCGACAGGCAGTGAACTTCGTGGTGCAAGGCTCCGCTGCTGACCTCTGCAAGCTGGCCATGATCCATGTCTTCACTGCAGTGGCTGCTTCCCACACCTTGACGGCCAGGCTGGTGGCCCAGATCCATGATGAGCTGCTGTTTGAAGTGGAAGATCCGCAGATCCCGGAGTGTGCAGCTCTCGTCAGGAGGACCATGGAGTCCTTGGAACAGGTGCAGGCATTGGAGCTGCAGCTTCAGGTACCCCTCAAGGTGAGCCTGAGTGCCGGCCGCTCATGGGGACACCTGGTGCCACTGCAGGAGGCCTGGGGCCCTCCGCCAGGCCCATGTCGCACTGAGTCTCCCAGCAACAGCCTGGCTGCCCCTGGGTCCCCTGCCAGCACCCAGCCCCCACCCCTGCATTTTTCGCCTTCATTTTGTCTGTAG MMNRFRKWLYKPKRSDPQLLARFYYADEELNQVAAELDSLDGRKDPQRCTLLVSQFRSCQEGCARGTGDTRRQRANQEGGVRGGLWSREGAAGCLPWSSYSGSCPVFGEFFAEVQENQGLRPSSYCPVSPDRLCGVHHGQKETPAKDSRS*PATPGTSRATGSELRGARLRC*PLQAGHDPCLHCSGCFPHLDGQAGGPDP**AAV*SGRSADPGVCSSRQEDHGVLGTGAGIGAAASGTPQGEPECRPLMGTPGATAGGLGPSARPMSH*VSQQQPGCPWVPCQHPAPTPAFFAFILSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32487 METTL16::SMG6 ENSG00000127804.13::ENSG00000070366.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1964 FALSE NA FALSE NA METTL16 ENSG00000127804.13 protein_coding - - chr17:2405562-2511891:- chr17:2511759:- chr17:2308856-2415185:- chr17:2415053:- SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2283735:- chr17:1963133-2207079:- chr17:2187029:- chr17:2508844,chr17:2508852 chr17:2287227,chr17:2287232 NA NA chr17:2412138,chr17:2412146 chr17:2190521,chr17:2190526 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SMG6:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.10Mb] 64 11 64 11 ONLY_REF_SPLICE YES_LDAS 0.8182 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32488 CEP128::DIO2 ENSG00000100629.17::ENSG00000211448.14 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CEP128 ENSG00000100629.17 protein_coding - - chr14:80476983-80959517:- chr14:80504912:- chr14:80943326-81425861:- chr14:80971255:- DIO2 ENSG00000211448.14 protein_coding - - chr14:80197526-80387757:- chr14:80278519:- chr14:80663869-80854100:- chr14:80744862:- chr14:80501052,chr14:80501056 chr14:80353542,chr14:80353543 NA NA chr14:80967395,chr14:80967399 chr14:80819885,chr14:80819886 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DIO2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.09Mb];NEIGHBORS[89226] 33 17 33 13.84 ONLY_REF_SPLICE YES_LDAS 0.511 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32490 SUMF1::ENSG00000235978 ENSG00000144455.14::ENSG00000235978.8 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SUMF1 ENSG00000144455.14 protein_coding - - chr3:3700814-4467273:- chr3:4410865:- chr3:3742498-4508957:- chr3:4452549:- ENSG00000235978 ENSG00000235978.8 lncRNA - - chr3:4793222-4887293:- chr3:4856745:- chr3:4834906-4928977:- chr3:4898429:- chr3:4410488,chr3:4410500 chr3:4867366,chr3:4867368 NA NA chr3:4452172,chr3:4452184 chr3:4909050,chr3:4909052 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 28 8 28 7.07 INCL_NON_REF_SPLICE YES_LDAS 0.3826 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32492 DCAF7::TANC2 ENSG00000136485.16::ENSG00000170921.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1966 FALSE NA FALSE NA DCAF7 ENSG00000136485.16 protein_coding + + chr17:63550222-63594286:+ chr17:63550815:+ chr17:61627583-61671648:+ chr17:61628176:+ TANC2 ENSG00000170921.16 protein_coding + + chr17:62966235-63427703:+ chr17:63379718:+ chr17:61043596-61505064:+ chr17:61457079:+ chr17:63565707,chr17:63565706 chr17:63361702,chr17:63361698 NA NA chr17:61643068,chr17:61643067 chr17:61439063,chr17:61439059 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|15-25|1^WD40|87-98|0.17^WD40-PARTIAL|122-138~|0.00016 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.12Mb] 23 7 23 7 ONLY_REF_SPLICE YES_LDAS 0.3273 GT 1.6729 AG 1.9656 ENST00000688437.1 1-138 ENST00000389520.8 2361-6003 chr17|+|[0]63550678-63550815[2]<==>chr17|+|[2]63379718-63379826[2]|[0]63388635-63388757[2]|[0]63389308-63389544[2]|[0]63395743-63395928[2]|[0]63398821-63398914[0]|[1]63405122-63405255[2]|[0]63406154-63406277[0]|[1]63411511-63411686[2]|[0]63411998-63412130[0]|[1]63412680-63412709[0]|[1]63413543-63413634[2]|[0]63415528-63415674[2]|[0]63418307-63418407[1]|[2]63419999-63421955[2] atgtccctgcacggcaaacggaaggagatctacaagtatgaagcgccctggacagtctacgcgatgaactggagtgtgcggcccgataagcgctttcgcttggcgctgggcagcttcgtggaggagtacaacaacaagGAGTGGTCACACGTTACTTGCCTTCTGGTTTTCCCGCCAAGAGGGAAAACTAAACCGACAGCAGACTATTGAACTGGGACATCACATCCTCAAAGCACACATTTTTAAGGGTTTGAGTAAAAAAGTTGGTGTATCATCCTCCATCCTCCAAGGTCTCTGGATCTCTTATAGCACAGAAGGTCTTTCCATGGCACTGGCGTCTTTACGAAATCTCTACACTCCAAATATAAAGGTCAGCCGACTGCTGATTTTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTTTAAATAATGCTCCAATTCTATGTGTTCAGTCCCATCTTGGTTACACAGAAATGGTAGCCCTGCTGCTGGAGTTCGGGGCCAACGTGGATGCCTCTTCTGAAAGTGGCCTGACTCCCCTGGGATATGCTGCAGCAGCAGGGTACCTGAGCATTGTGGTGCTGCTGTGCAAGAAACGGGCCAAGGTGGATCATTTGGATAAGAACGGGCAGTGTGCTTTGGTTCATGCTGCACTCCGAGGTCATCTGGAGGTTGTCAAGTTTTTGATTCAGTGTGACTGGACGATGGCCGGCCAGCAGCAAGGAGTATTTAAGAAGAGCCATGCCATCCAACAGGCCCTCATTGCTGCAGCCAGCATGGGTTATACTGAGATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTAGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAGCCCTAACAGCTGCAGCCGGAAGGGGCAAACTGGAGGTGTGCCGTTTGCTCTTGGAACAAGGGGCGGCAGTGGCCCAGCCAAACCGCCGAGGAGCAGTGCCACTATTCAGCACAGTGCGCCAGGGCCACTGGCAGATTGTTGATCTTTTACTCACCCATGGAGCTGATGTCAACATGGCAGACAAGCAGGGCCGCACTCCCCTGATGATGGCTGCTTCCGAAGGCCATCTAGGAACCGTGGACTTTCTGCTTGCACAAGGTGCCTCCATTGCTCTTATGGACAAAGAAGGATTGACAGCCCTCAGCTGGGCTTGTTTGAAGGGCCATCTCTCAGTAGTACGTTCTCTGGTGGATAACGGAGCTGCCACAGACCATGCTGACAAGAATGGCCGTACCCCACTGGATCTGGCAGCTTTCTATGGCGATGCTGAGGTGGTCCAGTTCCTGGTAGATCATGGGGCCATGATCGAGCACGTTGACTACAGTGGAATGCGCCCTTTGGATAGGGCAGTGGGGTGCCGGAACACTTCTGTTGTTGTCACTCTTCTGAAGAAAGGAGCCAAGATAGGTTGTCAGACGTTACCGAGTCGCCCACGAGGTCCAGCCACATGGGCGATGGCCACCTCCAAGCCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAGAAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACTTTCCGGGAACTAAAGGTGTCTCTCCTCCTCAACCTCTCTCGGTGTCGCAGGAAAATGAACGATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCTTACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAGACAGTTCGCAGCAGCCTTAGAGGACCTGAACGAGGCCATCAAGCTGTGTCCCAACAACCGTGAGATCCAGAGACTTCTGCTGAGAGTGGAAGAAGAGTGTAGACAGATGCAGCAGCCACAGCAGCCACCGCCGCCACCGCAGCCTCAGCAGCAGTTGCCGGAAGAAGCAGAACCTGAGCCACAGCATGAAGACATATACTCTGTACAGGATATATTCGAGGAGGAGTACCTGGAACAGGATGTTGAAAATGTTTCCATTGGCCTCCAGACAGAGGCCCGGCCCAGCCAGGGGCTCCCGGTCATCCAGAGCCCACCCTCCTCTCCCCCGCATCGGGACTCAGCCTACATCTCCAGCTCACCTCTTGGCTCTCATCAGGTTTTTGACTTCCGGTCCAGTAGTTCTGTAGGCTCTCCCACTAGACAGACCTATCAGTCCACCTCACCTGCCCTTTCTCCAACTCATCAGAACTCACATTACAGGCCTAGCCCACCACACACTTCCCCGGCTCATCAGGGAGGATCTTACCGTTTCAGCCCCCCTCCTGTGGGAGGACAGGGCAAAGAATACCCAAGCCCTCCCCCTTCCCCTCTCCGGAGAGGCCCTCAGTATCGGGCCAGCCCTCCAGCTGAAAGTATGAGTGTCTATAGATCCCAGTCTGGTTCACCCGTGCGCTATCAGCAGGAAACAAGCGTCAGTCAGCTTCCTGGCAGACCCAAATCTCCATTATCCAAAATGGCCCAGCGGCCCTACCAGATGCCTCAGCTCCCTGTGGCAGTTCCCCAGCAAGGGCTCAGGCTACAGCCTGCCAAGGCCCAGATTGTGAGAAGTAACCAGCCCAGCCCAGCCGTCCATTCAAGCACCGTCATCCCCACAGGAGCCTATGGCCAAGTAGCCCATTCAATGGCCAGTAAATACCAGTCTTCACAAGGAGACATAGGAGTCAGCCAGAGCCGGTTGGTTTATCAAGGGTCAATTGGGGGAATCGTAGGGGATGGAAGGCCGGTGCAGCATGTCCAAGCCAGCCTGAGTGCAGGCGCCATCTGTCAGCATGGAGGATTGACCAAAGAGGATCTTCCACAGCGACCTTCCTCAGCATACCGAGGTGGCGTGAGATACAGCCAGACACCACAGATCGGACGCAGCCAGTCAGCATCCTATTACCCAGTCTGTCACTCAAAACTAGATCTGGAGCGCTCCTCCAGCCAACTAGGTTCCCCTGATGTGTCGCATTTAATCAGAAGACCTATCAGTGTCAACCCTAACGAAATCAAACCGCACCCGCCAACTCCCAGGCCGTTGCTGCATTCCCAAAGTGTAGGCCTTCGCTTCTCTCCATCTAGCAATAGTATCTCCTCCACCTCCAACCTAACTCCGACCTTCCGGCCATCTTCTTCCATCCAGCAAATGGAGATCCCACTGAAACCTGCATATGAGAGGTCATGTGACGAGCTGTCGCCAGTGTCTCCAACTCAAGGAGGTTACCCCAGTGAGCCCACCCGATCCAGGACCACACCATTCATGGGGATCATAGATAAAACAGCACGGACTCAGCAGTACCCCCACCTCCACCAGCAGAATCGGACCTGGGCAGTGTCATCTGTGGACACCGTCCTCAGTCCCACGTCTCCAGGCAACCTGCCTCAGCCTGAGTCCTTCAGTCCACCATCATCCATCAGCAACATTGCCTTTTATAACAAAACCAACAATGCACAGAATGGCCATTTGCTGGAGGACGATTATTACAGCCCCCATGGGATGCTGGCTAACGGGTCTCGTGGAGACCTCTTGGAGCGAGTCAGCCAGGCCTCCTCCTATCCCGACGTGAAGGTAGCTCGGACTCTACCTGTGGCTCAGGCATACCAGGACAACCTGTACAGGCAGCTGTCCCGAGACTCTCGGCAAGGGCAGACATCCCCTATCAAACCAAAGAGACCGTTCGTGGAGTCTAATGTTTAA MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKEWSHVTCLLVFPPRGKTKPTADY*TGTSHPQSTHF*GFE*KSWCIILHPPRSLDLL*HRRSFHGTGVFTKSLHSKYKGQPTADFGRCQY*LPDRGFK*CSNSMCSVPSWLHRNGSPAAGVRGQRGCLF*KWPDSPGICCSSRVPEHCGAAVQETGQGGSFG*ERAVCFGSCCTPRSSGGCQVFDSV*LDDGRPAARSI*EEPCHPTGPHCCSQHGLY*DCLLPT*SSRKR*RGSRASTDQQL*QSLGRDSPNSCSRKGQTGGVPFALGTRGGSGPAKPPRSSATIQHSAPGPLADC*SFTHPWS*CQHGRQAGPHSPDDGCFRRPSRNRGLSACTRCLHCSYGQRRIDSPQLGLFEGPSLSSTFSGG*RSCHRPC*QEWPYPTGSGSFLWRC*GGPVPGRSWGHDRAR*LQWNAPFG*GSGVPEHFCCCHSSEERSQDRLSDVTESPTRSSHMGDGHLQARHHDHPVEQADGRGGHVL*ER*SKGSCPALPVRPEEVP*RRVW*GLENFPGTKGVSPPQPLSVSQENERFWNGGGICY*GPGAETEIL*SLLCESKGKTQQQTVRSSLRGPERGHQAVSQQP*DPETSAESGRRV*TDAAATAATAATAASAAVAGRSRT*ATA*RHILCTGYIRGGVPGTGC*KCFHWPPDRGPAQPGAPGHPEPTLLSPASGLSLHLQLTSWLSSGF*LPVQ*FCRLSH*TDLSVHLTCPFSNSSELTLQA*PTTHFPGSSGRILPFQPPSCGRTGQRIPKPSPFPSPERPSVSGQPSS*KYECL*IPVWFTRALSAGNKRQSASWQTQISIIQNGPAALPDASAPCGSSPARAQATACQGPDCEK*PAQPSRPFKHRHPHRSLWPSSPFNGQ*IPVFTRRHRSQPEPVGLSRVNWGNRRGWKAGAACPSQPECRRHLSAWRIDQRGSSTATFLSIPRWREIQPDTTDRTQPVSILLPSLSLKTRSGALLQPTRFP*CVAFNQKTYQCQP*RNQTAPANSQAVAAFPKCRPSLLSI*Q*YLLHLQPNSDLPAIFFHPANGDPTETCI*EVM*RAVASVSNSRRLPQ*AHPIQDHTIHGDHR*NSTDSAVPPPPPAESDLGSVICGHRPQSHVSRQPASA*VLQSTIIHQQHCLL*QNQQCTEWPFAGGRLLQPPWDAG*RVSWRPLGASQPGLLLSRREGSSDSTCGSGIPGQPVQAAVPRLSARADIPYQTKETVRGV*CL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32501 PAWR::ENSG00000257191 ENSG00000177425.11::ENSG00000257191.1 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79613575:- chr12:79968759-80084744:- chr12:80007355:- ENSG00000257191 ENSG00000257191.1 lncRNA - - chr12:78960258-79045644:- chr12:78976669:- chr12:79354038-79439424:- chr12:79370449:- chr12:79605551,chr12:79605555 chr12:79028173,chr12:79028174 NA NA chr12:79999331,chr12:79999335 chr12:79421953,chr12:79421954 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PAWR:Oncogene"] 16 16 16 15.38 ONLY_REF_SPLICE YES_LDAS 0.3423 GT 1.6402 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32502 NCK1::IL20RB ENSG00000158092.7::ENSG00000174564.13 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4873 TRUE 1801 NCK1 ENSG00000158092.7 protein_coding + + chr3:136862208-136951606:+ chr3:136862353:+ chr3:136581050-136670448:+ chr3:136581195:+ IL20RB ENSG00000174564.13 protein_coding + + chr3:136946230-137011085:+ chr3:136989441:+ chr3:136665072-136729927:+ chr3:136708283:+ chr3:136876812,chr3:136876809 chr3:136983810,chr3:136983804 NA NA chr3:136595654,chr3:136595651 chr3:136702652,chr3:136702646 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCK1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS_OVERLAP:+:+:[3593] 15 11 15 5.93 ONLY_REF_SPLICE YES_LDAS 0.2283 GT 1.7465 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32506 NCK1::IL20RB ENSG00000158092.7::ENSG00000174564.13 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4873 TRUE 1801 NCK1 ENSG00000158092.7 protein_coding + + chr3:136862208-136951606:+ chr3:136862319:+ chr3:136581050-136670448:+ chr3:136581161:+ IL20RB ENSG00000174564.13 protein_coding + + chr3:136946230-137011085:+ chr3:136995414:+ chr3:136665072-136729927:+ chr3:136714256:+ chr3:136876812,chr3:136876809 chr3:136983810,chr3:136983804 NA NA chr3:136595654,chr3:136595651 chr3:136702652,chr3:136702646 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCK1:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS_OVERLAP:+:+:[3593] 13 3 13 0.28 ONLY_REF_SPLICE YES_LDAS 0.1449 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32508 MTFR1::PDE7A ENSG00000066855.16::ENSG00000205268.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3634 TRUE 1371 MTFR1 ENSG00000066855.16 protein_coding + + chr8:65644734-65771261:+ chr8:65682451:+ chr8:66556969-66683496:+ chr8:66594686:+ PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65788978:- chr8:66626569-66754557:- chr8:66701213:- chr8:65688441,chr8:65688440 chr8:65792440,chr8:65792441 NA NA chr8:66600676,chr8:66600675 chr8:66704675,chr8:66704676 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.05Mb];NEIGHBORS_OVERLAP:+:-:[53751] 12 4 12 2.4 INCL_NON_REF_SPLICE YES_LDAS 0.1571 GT 1.9329 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32510 PXK::FLNB ENSG00000168297.16::ENSG00000136068.16 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE TRUE 1973 FALSE NA FALSE NA PXK ENSG00000168297.16 protein_coding + + chr3:58332880-58426127:+ chr3:58333090:+ chr3:58318607-58411854:+ chr3:58318817:+ FLNB ENSG00000136068.16 protein_coding + + chr3:58008398-58172251:+ chr3:58142650:+ chr3:57994125-58157978:+ chr3:58128377:+ chr3:58342100,chr3:58342101 chr3:58142350,chr3:58142348 NA NA chr3:58327827,chr3:58327828 chr3:58128077,chr3:58128075 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PX-PARTIAL|27-102~|1.5e-20 none ["FLNB:Oncogene"];["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.16Mb] 11 5 11 5 ONLY_REF_SPLICE YES_LDAS 0.1745 GT 1.8295 AG 1.8062 ENST00000383715.8 1-102 ENST00000358537.7 5110-7737 chr3|+|[0]58332989-58333090[2]<==>chr3|+|[0]58142650-58142752[0]|[1]58143473-58143613[0]|[1]58145921-58146049[0]|[1]58146820-58146993[0]|[1]58148206-58148364[0]|[1]58148649-58148852[0]|[1]58149850-58150002[0]|[1]58150105-58150227[0]|[1]58153375-58153641[0]|[1]58154791-58154928[0]|[1]58155960-58156075[2]|[0]58159554-58159686[0]|[1]58163154-58163330[0]|[1]58168440-58168658[0]|[1]58169590-58169793[0]|[1]58170575-58170762[2] atggccttcatggagaagccgccagccggcaaggtgctgctggacgacacggtgccgctgacagcagccatcgaggcgagccagagcctgcagtcccacacgGTGACCGAAGAGGCCTATGTCCCAGTGAGTGACATGAACGGCCTGGGATTTAAGCCTTTTGACCTGGTCATTCCGTTTGCTGTCAGGAAAGGAGAAATCACTGGAGAGGTCCACATGCCTTCTGGGAAGACAGCCACACCTGAGATTGTGGACAACAAGGACGGCACGGTCACTGTTAGATATGCCCCCACTGAGGTCGGGCTCCATGAGATGCACATCAAATACATGGGCAGCCACATCCCTGAGAGCCCACTCCAGTTCTACGTGAACTACCCCAACAGTGGAAGTGTTTCTGCATACGGTCCAGGCCTCGTGTATGGAGTGGCCAACAAAACTGCCACCTTCACCATCGTCACAGAGGATGCAGGAGAAGGTGGTCTGGACTTGGCTATTGAGGGCCCCTCAAAAGCAGAAATCAGCTGCATTGACAATAAAGATGGGACATGCACAGTGACCTACCTGCCGACTCTGCCAGGCGACTACAGCATTCTGGTCAAGTACAATGACAAGCACATCCCTGGCAGCCCCTTCACAGCCAAGATCACAGATGACAGCAGGCGGTGCTCCCAGGTGAAGTTGGGCTCAGCCGCTGACTTCCTGCTCGACATCAGTGAGACTGACCTCAGCAGCCTGACGGCCAGCATTAAGGCCCCATCTGGCCGAGACGAGCCCTGTCTCCTGAAGAGGCTGCCCAACAACCACATTGGCATCTCCTTCATCCCCCGGGAAGTGGGCGAACATCTGGTCAGCATCAAGAAAAATGGCAACCATGTGGCCAACAGCCCCGTGTCTATCATGGTGGTCCAGTCGGAGATTGGTGACGCCCGCCGAGCCAAAGTCTATGGCCGCGGCCTGTCAGAAGGCCGGACTTTCGAGATGTCTGACTTCATCGTGGACACAAGGGATGCAGGTTATGGTGGCATATCCTTGGCGGTGGAAGGCCCCAGCAAAGTGGACATCCAGACGGAGGACCTGGAAGATGGCACCTGCAAAGTCTCCTACTTCCCTACCGTGCCTGGGGTTTATATCGTCTCCACCAAATTCGCTGACGAGCACGTGCCTGGGAGCCCATTTACCGTGAAGATCAGTGGGGAGGGAAGAGTCAAAGAGAGCATCACCCGCACCAGTCGGGCCCCGTCCGTGGCCACTGTCGGGAGCATTTGTGACCTGAACCTGAAAATCCCAGAAATCAACAGCAGTGATATGTCGGCCCACGTCACCAGCCCCTCTGGCCGTGTGACTGAGGCAGAGATTGTGCCCATGGGGAAGAACTCACACTGCGTCCGGTTTGTGCCCCAGGAGATGGGCGTGCACACGGTCAGCGTCAAGTACCGTGGGCAGCACGTCACCGGCAGCCCCTTCCAGTTCACCGTGGGGCCACTTGGTGAAGGAGGCGCCCACAAGGTGCGGGCAGGAGGCCCTGGCCTGGAGAGAGGAGAAGCGGGAGTCCCAGCTGAGTTCAGCATTTGGACCCGGGAAGCAGGCGCTGGAGGCCTCTCCATCGCTGTTGAGGGCCCCAGTAAGGCCGAGATTACATTCGATGACCATAAAAATGGGTCGTGCGGTGTATCTTATATTGCCCAAGAGCCTGGTAACTACGAGGTGTCCATCAAGTTCAATGATGAGCACATCCCGGAAAGCCCCTACCTGGTGCCGGTCATCGCACCCTCCGACGACGCCCGCCGCCTCACTGTTATGAGCCTTCAGGAATCGGGATTAAAAGTTAACCAGCCAGCATCCTTTGCTATAAGGTTGAATGGCGCAAAAGGCAAGATTGATGCAAAGGTGCACAGCCCCTCTGGAGCCGTGGAGGAGTGCCACGTGTCTGAGCTGGAGCCAGATAAGTATGCTGTTCGCTTCATCCCTCATGAGAATGGTGTCCACACCATCGATGTCAAGTTCAATGGGAGCCACGTGGTTGGAAGCCCCTTCAAAGTGCGCGTTGGGGAGCCTGGACAAGCGGGGAACCCTGCCCTGGTGTCCGCCTATGGCACGGGACTCGAAGGGGGCACCACAGGTATCCAGTCGGAATTCTTTATTAACACCACCCGAGCAGGTCCAGGGACATTATCCGTCACCATCGAAGGCCCATCCAAGGTTAAAATGGATTGCCAGGAAACACCTGAAGGGTACAAAGTCATGTACACCCCCATGGCTCCTGGTAACTACCTGATCAGCGTCAAATACGGTGGGCCCAACCACATCGTGGGCAGTCCCTTCAAGGCCAAGGTGACAGGCCAGCGTCTAGTTAGCCCTGGCTCAGCCAACGAGACCTCATCCATCCTGGTGGAGTCAGTGACCAGGTCGTCTACAGAGACCTGCTATAGCGCCATTCCCAAGGCATCCTCGGACGCCAGCAAGGTGACCTCTAAGGGGGCAGGGCTCTCAAAGGCCTTTGTGGGCCAGAAGAGTTCCTTCCTGGTGGACTGCAGCAAAGCTGGCTCCAACATGCTGCTGATCGGGGTCCATGGGCCCACCACCCCCTGCGAGGAGGTCTCCATGAAGCATGTAGGCAACCAGCAATACAACGTCACATACGTCGTCAAGGAGAGGGGCGATTATGTGCTGGCTGTGAAGTGGGGGGAGGAACACATCCCTGGCAGCCCTTTTCATGTCACAGTGCCTTAA MAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHTVTEEAYVPVSDMNGLGFKPFDLVIPFAVRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQFYVNYPNSGSVSAYGPGLVYGVANKTATFTIVTEDAGEGGLDLAIEGPSKAEISCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAKITDDSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSIMVVQSEIGDARRAKVYGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVKISGEGRVKESITRTSRAPSVATVGSICDLNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQFTVGPLGEGGAHKVRAGGPGLERGEAGVPAEFSIWTREAGAGGLSIAVEGPSKAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLVPVIAPSDDARRLTVMSLQESGLKVNQPASFAIRLNGAKGKIDAKVHSPSGAVEECHVSELEPDKYAVRFIPHENGVHTIDVKFNGSHVVGSPFKVRVGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTRAGPGTLSVTIEGPSKVKMDCQETPEGYKVMYTPMAPGNYLISVKYGGPNHIVGSPFKAKVTGQRLVSPGSANETSSILVESVTRSSTETCYSAIPKASSDASKVTSKGAGLSKAFVGQKSSFLVDCSKAGSNMLLIGVHGPTTPCEEVSMKHVGNQQYNVTYVVKERGDYVLAVKWGEEHIPGSPFHVTVP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE PX domain-containing protein kinase-like protein Other Slob Q7Z7A4 FALSE NA NA NA NA NA NA TRUE Liver no_match TRUE Liver hepatocellular carcinoma LIVER no_match 58318817 TRUE 58145281 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32518 MTFR1::PDE7A ENSG00000066855.16::ENSG00000205268.11 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3634 TRUE 1371 MTFR1 ENSG00000066855.16 protein_coding + + chr8:65644734-65771261:+ chr8:65682451:+ chr8:66556969-66683496:+ chr8:66594686:+ PDE7A ENSG00000205268.11 protein_coding - - chr8:65714334-65842322:- chr8:65788981:- chr8:66626569-66754557:- chr8:66701216:- chr8:65688441,chr8:65688440 chr8:65792440,chr8:65792441 NA NA chr8:66600676,chr8:66600675 chr8:66704675,chr8:66704676 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.05Mb];NEIGHBORS_OVERLAP:+:-:[53751] 8 4 8 1.6 ONLY_REF_SPLICE YES_LDAS 0.1048 GT 1.9329 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32519 PIK3C3::LINC00907 ENSG00000078142.14::ENSG00000267586.7 A3KAW SRR8616021 SRR8639174 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (diffuse_large_B_cell_lymphoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PIK3C3 ENSG00000078142.14 protein_coding + + chr18:41955234-42087830:+ chr18:41990554:+ chr18:39535199-39667794:+ chr18:39570518:+ LINC00907 ENSG00000267586.7 lncRNA + + chr18:42159283-42691422:+ chr18:42335084:+ chr18:39739247-40271387:+ chr18:39915049:+ chr18:41991013,chr18:41991008 chr18:42247871,chr18:42247864 NA NA chr18:39570977,chr18:39570972 chr18:39827836,chr18:39827829 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.07Mb];NEIGHBORS[71453] 8 8 8 3.93 ONLY_REF_SPLICE YES_LDAS 0.1302 GT 1.5219 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32531 DDX55::DNAH10 ENSG00000111364.16::ENSG00000197653.16 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1977 FALSE NA FALSE NA DDX55 ENSG00000111364.16 protein_coding + + chr12:123602077-123620943:+ chr12:123610128:+ chr12:124086624-124105490:+ chr12:124094675:+ DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123783107:+ chr12:124246735-124420267:+ chr12:124267654:+ chr12:123612248,chr12:123612249 chr12:123782507,chr12:123782505 NA NA chr12:124096795,chr12:124096796 chr12:124267054,chr12:124267052 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DEAD|33-211|6.3e-45^ResIII|45-204|8.4e-10^Helicase_C|84-141|0.71^Helicase_C_2|100-142|0.47^Helicase_C|253-363|1.2e-29^DEAD|263-325|0.34^Helicase_C_2|264-336|1.7e-05^DUF4217|414-463|5.7e-23^Helicase_C|488-506|2.3^ResIII|495-532|1.6^SEEEED|504-557|0.0036^Helicase_C_2|509-509|3.2 DHC_N1-PARTIAL|~842-876|1.6e-156^AAA_5-PARTIAL|~842-859|3.3^Peptidase_S66C|931-1021|0.0018^DHC_N2|1168-1238|0.086^Dynein_heavy|1168-1208|3.7^PDC10_C|1194-1235|0.001^DHC_N2|1373-1777|4.2e-141^PDC10_C|1506-1527|3.7^AAA_6|1912-2238|8.3e-159^AAA_7|1949-1967|0.23^AAA_16|1949-1979|0.079^AAA_18|1949-2022|0.0017^AAA_5|1950-2070|2.1e-06^AAA_22|1950-1983|0.042^AAA|1950-1990|0.00051^RNA_helicase|1950-1970|0.027^RsgA_GTPase|2194-2248|2.2e-05^AAA_16|2216-2267|1^AAA_7|2221-2249|0.013^AAA_22|2225-2302|0.012^AAA_5|2228-2363|2.9e-09^RNA_helicase|2228-2262|0.029^Spo7_2_N|2352-2364|2.1^Dynein_AAA_lid|2395-2528|3.2e-22^AAA_7|2536-2715|1.3e-70^AAA_6|2545-2604|0.0058^RsgA_GTPase|2546-2596|0.34^Dynein_heavy|2566-2592|7.5^AAA_22|2567-2625|5e-06^AAA_5|2568-2707|2.8e-10^AAA|2569-2641|0.13^AAA_16|2569-2605|0.012^RNA_helicase|2569-2595|0.22^AAA_lid_1|2750-2840|1.1e-19^RsgA_GTPase|2876-2933|1.7^AAA_8|2891-3150|2.2e-99^AAA_16|2899-2939|0.089^AAA_22|2912-2964|0.15^AAA_5|2917-2957|0.00026^AAA|2918-2951|0.23^AAA_18|2918-3021|0.32^DHC_N2|3154-3188|4.9^MT|3164-3498|8.2e-55^AAA_5|3190-3240|0.65^AAA_9|3204-3235|1.7^DHC_N2|3379-3408|1.1^Dynein_C|3383-3426|0.76^RsgA_GTPase|3383-3423|2.1^AAA_9|3525-3745|1.3e-87^Dynein_heavy|3992-4104|8.7e-44^AAA_9|4030-4057|0.52^AAA_lid_11|4135-4282|1.1e-51^Dynein_C|4288-4586|3.6e-96^AAA|4316-4364|2^Spo7_2_N|4386-4404|0.0002 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.14Mb] 25 9 25 9 ONLY_REF_SPLICE YES_LDAS 0.4619 GT 1.8295 AG 1.8256 ENST00000238146.9 1-741 ENST00000673944.1 842-13770 chr12|+|[0]123602149-123602256[2]|[0]123605931-123605981[2]|[0]123606073-123606159[2]|[0]123607432-123607523[1]|[2]123607600-123607662[1]|[2]123608680-123608829[1]|[2]123609939-123610128[2]<==>chr12|+|[1]123783107-123783264[2]|[0]123783947-123784177[2]|[0]123785746-123785936[1]|[2]123787804-123788002[2]|[0]123789927-123790121[2]|[0]123793942-123794112[2]|[0]123796656-123796832[2]|[0]123799246-123799371[2]|[0]123800216-123800388[1]|[2]123801281-123801432[0]|[1]123803661-123803825[0]|[1]123804833-123805040[1]|[2]123808797-123808953[2]|[0]123813164-123813640[2]|[0]123813754-123813912[2]|[0]123818950-123819066[2]|[0]123819148-123819250[0]|[1]123820580-123820758[2]|[0]123826687-123826898[1]|[2]123830546-123830699[2]|[0]123833114-123833347[2]|[0]123835406-123835528[2]|[0]123838456-123838689[2]|[0]123841322-123841545[1]|[2]123845600-123845869[1]|[2]123845971-123846154[2]|[0]123847961-123848095[2]|[0]123848730-123848882[2]|[0]123850888-123851076[2]|[0]123853206-123853352[2]|[0]123857056-123857247[2]|[0]123859150-123859268[1]|[2]123861012-123861170[1]|[2]123864595-123864730[2]|[0]123865951-123866073[2]|[0]123867467-123867601[2]|[0]123867903-123868119[0]|[1]123870366-123870485[0]|[1]123871457-123871602[2]|[0]123873558-123873710[2]|[0]123875231-123875491[2]|[0]123877736-123877908[1]|[2]123879264-123879357[2]|[0]123879634-123879801[2]|[0]123881625-123881813[2]|[0]123887142-123887313[0]|[1]123893233-123893436[0]|[1]123894643-123894723[0]|[1]123897770-123897967[0]|[1]123898653-123898814[0]|[1]123902939-123903113[1]|[2]123909261-123909442[0]|[1]123910536-123910672[2]|[0]123913098-123913315[1]|[2]123914329-123914550[1]|[2]123914852-123914999[2]|[0]123916457-123916736[0]|[1]123917584-123917813[2]|[0]123918676-123918949[0]|[1]123923763-123923867[0]|[1]123924278-123924432[2]|[0]123925050-123925204[1]|[2]123926637-123926820[2]|[0]123928387-123928587[2]|[0]123929275-123929484[2]|[0]123929664-123929759[2]|[0]123930402-123930573[0]|[1]123931341-123931472[0]|[1]123931636-123931847[2]|[0]123931941-123932108[2]|[0]123933331-123933511[0]|[1]123934621-123934766[2]|[0]123935335-123935481[2] atggagcatgtgacagagggctcctgggagtcgctgcctgtgccgctgcacccgcaggtgctgggcgcgctgcgggagctgggcttcccgtacatgacgccggtgcagtccgcaaccatccctctgttcatgcgaaacaaagatgtcgctgcagaagcggtcacaggtagtggcaaaacactcgcttttgtcatccccatcctggaaattcttctgagaagagaagagaagttaaaaaagagtcaggttggagccataatcatcacccccactcgagagctggccattcaaatagacgaggtcctgtcgcatttcacgaagcacttccccgagttcagccagattctttggatcggaggcaggaatcctggagaagatgttgagaggtttaagcaacaaggtgggaacatcattgtggccactccaggccgcttggaggacatgttccggaggaaggccgaaggcttggatctggccagctgtgtgcgatccctggatgtcctggtgttggatgaggcagacagacttctggacatggggtttgaggcaagcatcaacaccattctggagtttttgccaaagcagaggagaacaggccttttctctgccactcagacgcaggaagtggagaacctggtgagagcgggcctccggaaccctgtccgggtctcagtgaaggagaagggcgtggcagccagcagtgcccagaagaccccctcccgcctggaaaactactacatgGTGAGATCAAGTTAGAAATGCCAATCATCAGTGTGGAGGGAGAGGTGTCTGACCTGGCAGCTGACCCGGAAACCGTTGACATCTTGGAGCAGTGTGTGATAAACTGGCTGAATCAGATATCCACAGCGGTTGAGGCCCAACTGAAGAAGACACCTCAGGGTAAAGGCCCTCTGGCTGAAATTGAATTCTGGAGGGAAAGAAATGCAACCTTAAGTGCGCTGCATGAACAAACAAAGCTTCCAATAGTCAGAAAAGTCTTGGATGTGATCAAGGAATCCGACTCCATGCTTGTGGCTAATCTGCAGCCAGTGTTCACCGAGTTATTCAAGTTCCACACGGAGGCCTCAGACAATGTGCGCTTTCTCTCCACCGTGGAGCGTTATTTCAAGAACATAACGCACGGGTCTGGCTTCCACGTGGTCCTGGACACCATCCCCGCCATGATGAGTGCCCTGCGGATGGTGTGGATCATCTCCCGACACTACAACAAAGACGAGAGGATGATTCCGCTCATGGAGCGCATCGCCTGGGAAATCGCTGAGAGAGTCTGCCGAGTGGTCAACCTGCGGACTTTGTTCAAAGAAAATCGAGCGAGTGCCCAAAGCAAAACCTTGGAAGCCAGGAACACCCTCAGGCTGTGGAAAAAGGCCTATTTTGACACCCGGGCCAAGATAGAGGCTTCGGGGAGGGAAGATCGGTGGGAGTTTGACCGGAAGCGGCTGTTCGAGAGGACGGATTATATGGCCACCATCTGCCAGGACCTCTCCGACGTTCTGCAGATTTTGGAGGAATTTTATAACATATTTGGTCCAGAACTAAAGGCAGTGACGGGGGACCCCAAGCGCATTGATGATGTCCTATGCAGAGTGGACGGCCTAGTCACCCCCATGGAAAACCTGACCTTTGACCCCTTCAGCATCAAGTCCTCCCAGTTCTGGAAATATGTGATGGATGAATTCAAGATTGAAGTTCTGGTTATTGAGAAAGAAGCAAAACATTTTATTGATGAATCTTTTAAGACGCTTCGATCTGCTGAAGCAGCATTTGACATGCTTTTAAAATTTAAGCACATTCGTTCACGGGAGGCTGTTAATCGACAAATGATGATGAAATTTAATGATATTCTTGCACAGTACTGTAAAGAGATTGACATCATTAATAAAATCTTTGTCCAGAACCTTGAAAATCCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAGGTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATGAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAGTCTTCCATCGCCACAGAGGAGCCTTCGACTTTAGAAAGGGGAGCTGTTTTTGCAATCAACTTTTCACCGGCTCTCAGAGAGATTATTAATGAAACAAAGTACTTAGAGCAGCTGGGGTTCACTGTCCCTGAATTAGCAAGAAATGTTGCTCTCCAGGAAGACAAATTCCTTAGGTACACAGCTGGGATACAGCGCATGTTGGATCATTATCACATGCTCATAGGAACGTTAAACGATGCGGAGTCTGTGCTTCTCAAAGATCATTCCCAGGAACTGCTCCGAGTGTTTAGGTCGGGATATAAGAGGTTGAACTGGAACTCACTAGGTATCGGTGACTATATAACTGGTTGCAAACAGGCCATTGGGAAATTTGAGTCTCTCGTCCACCAGATTCATAAGAATGCAGATGACATTTCTTCCAGGCTGACATTAATAGAGGCCATAAATCTCTTTAAATATCCAGCCGCTAAAAGTGAGGAAGAACTCCCAGGCGTGAAGGAATTTTTTGAACACATTGAGCGAGAAAGGGCCAGCGACGTGGACCACATGGTCCGGTGGTATCTTGCCATTGGACCACTGCTGACCAAAGTTGAGGGCCTGGTCGTCCACACCAACACAGGCAAGGCCCCCAAGCTGGCCTCCTACTACAAATACTGGGAAAAGAAAATTTATGAGGTCCTGACAAAGCTCATCCTGAAGAACTTGCAGTCTTTTAATTCTTTGATCCTTGGAAATGTCCCTCTGTTCCACACTGAAACCATTCTGACGGCACCTGAGATCATCCTTCATCCCAACACAAATGAGATCGACAAGATGTGCTTCCATTGTGTCCGGAATTGCGTGGAGATCACCAAGCATTTTGTTCGTTGGATGAATGGCAGCTGCATAGAATGCCCACCTCAGAAGGGGGAGGAAGAGGAAGTTGTTATAATAAACTTTTACAATGATATCTCTCTGAACCCTCAGATAATTGAACAAGCTGTTATGATCCCCCAAAATGTCCACAGGATTCTGATCAATCTTATGAAGTATCTACAAAAATGGAAGCGGTATCGACCTCTCTGGAAATTGGACAAAGCTATTGTGATGGAGAAATTTGCTGCCAAGAAACCTCCTTGTGTAGCATATGATGAAAAGTTGCAGTTCTATTCCAAGATAGCTTATGAGGTTATGCGCCACCCTCTAATTAAGGATGAGCATTGCATCAGACTTCAGCTCAGGCATCTGGCAAACACAGTGCAGGAAAATGCCAAGTCCTGGGTGATTTCGCTTGGAAAACTTCTCAATGAGTCAGCAAAAGAGGAGCTCTATAATCTCCATGAAGAGATGGAGCACCTGGCCAAAAACCTTAGGAAGATCCCCAATACCCTTGAAGATCTCAAGTTTGTCCTTGCAACAATTGCAGAAATTAGAAGTAAATCTCTAGTCATGGAACTCAGATATAGGGACGTCCAGGAGCGATACCGTACCATGGCAATGTATAACCTCTTTCCTCCTGATGCAGAGAAAGAACTGGTTGATAAGATTGAGAGCATATGGTCCAATCTGTTTAATGATTCAGTGAATGTGGAGCATGCTCTTGGGGACATAAAGAGAACTTTCACAGAGCTTACTCGAGGCGAAATAATGAACTACAGAGTTCAGATAGAGGAGTTTGCAAAGCGTTTTTACAGTGAAGGCCCTGGTTCTGTTGGTGATGATCTTGATAAAGGAGTAGAGCTTTTAGGTGTTTATGAAAGAGAGCTGGCAAGACATGAAAAGAGCCGTCAGGAACTGGCTAACGCTGAGAAACTTTTCGATCTTCCTATTACAATGTACCCAGAGCTGCTGAAAGTGCAGAAGGAAATGAGTGGGCTGAGGATGATTTACGAGCTCTATGAAGGACTAAAGGTTGCAAAAGAAGAATGGTCTCAGACCCTTTGGATCAACCTGAATGTGCAGATTCTCCAGGAAGGAATTGAAGGTTTTCTCAGGGCTCTCAGAAAGCTACCTCGGCCAGTCCGTGGCTTATCAGTGACCTACTACTTGGAAGCAAAAATGAAGGCATTCAAAGACTCGATTCCTTTACTTCTTGACTTGAAAAACGAGGCACTAAGAGACAGGCATTGGAAAGAACTTATGGAAAAAACGTCTGTCTTTTTTGAAATGACCGAAACGTTCACCTTGGAAAATATGTTTGCTATGGAACTGCACAAACACACAGATGTTCTCAATGAGATTGTCACAGCAGCAATCAAGGAGGTTGCCATTGAGAAGGCTGTGAAGGAAATCCTAGACACGTGGGAAAATATGAAATTCACTGTAGTCAAGTATTGCAAAGGCACACAGGAGCGAGGCTACATCCTGGGTTCTGTTGACGAAATTATTCAGTCTCTTGATGACAACACTTTCAACCTGCAGAGCATCTCAGGAAGCAGATTTGTGGGGCCTTTTCTGCAAACTGTTCACAAATGGGAAAAAACGCTTTCTCTAATAGGGGAAGTCATTGAGATTTGGATGTTGGTTCAGAGAAAATGGATGTATCTTGAAAGTATTTTTATTGGTGGAGATATAAGATCACAACTTCCGGAAGAGGCAAAAAAGTTTGACAACATCGATAAAGTATTTAAAAGGATCATGGGTGAGACCTTAAAAGACCCCGTGATCAAGAGGTGCTGTGAAGCCCCAAACCGCCTCAGTGACCTACAGAACGTCAGCGAGGGCCTGGAGAAATGCCAGAAAAGCCTCAACGACTACTTAGATTCGAAGAGAAATGCTTTCCCAAGGTTCTTCTTCATTTCTGACGATGAGTTGCTTAGCATTCTGGGGAGCAGCGACCCACTCTGCGTCCAGGAGCACATGATCAAGATGTACGACAACATAGCATCACTGAGGTTTAATGACGGCGATAGTGGAGAAAAACTGGTGTCCGCGATGATTTCAGCAGAAGGAGAAGTCATGGAGTTTCGGAAGATCTTGCGGGCTGAAGGGCGCGTGGAGGACTGGATGACGGCAGTTTTGAATGAGATGAGAAGAACTAATAGACTAATTACCAAAGAGGCTATTTTTAGATACTGTGAAGACAGAAGCAGAGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCTAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGCGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCATGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAGTATCCTGGAGGCCCGAGAGTTTGACTGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGATCGGATTTACCTGACGCTCACCCAGGCGCTGTCCATGTATCTAGGTGGGGCCCCCGCCGGCCCAGCAGGAACCGGCAAAACCGAGACCACCAAGGACCTGGCGAAAGCCTTGGGCTTGCTCTGTGTTGTCACCAACTGTGGCGAAGGCATGGATTACAGGGCCGTGGGGAAGATTTTCTCTGGCCTGGCACAGTGCGGGGCTTGGGGCTGCTTTGATGAGTTTAATCGAATCGATGCTTCTGTGCTCTCCGTGATCTCCTCCCAGATCCAGACGATCCGAAATGCTCTGATCCATCAGTTAACCACGTTCCAGTTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAGACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAGGACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGTCCTACCCATCCAGGTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAAGCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAAGTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAGGTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAGGTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAGTATGTGCCCTATCTCATGGATGTGATAGTGGAAGGAATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATGGTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAGGTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGGTTCACACAGTGGATACCACTCGGACTACCTGGATATTGGAACAAATGGTTAAAATTAAGCAACCTGTTATTTTTGTTGGTGAATCTGGCACTTCTAAGACAGCCACTACCCAGAATTTCCTCAAAAATCTGAGTGAAGAAACTAACATTGTGTTAATGGTCAACTTCTCCTCCCGCACCACGTCCATGGATATCCAAAGAAATTTAGAAGCAAATGTGGAAAAGCGAACCAAAGATACTTACGGCCCACCCATGGGAAAACGCCTGCTGGTGTTCATGGATGACATGAATATGCCAAGGGTGGATGAATATGGCACGCAGCAGCCCATTGCCTTGCTGAAGCTGCTGTTGGAAAAAGGCTACTTATATGACCGTGGGAAGGAGCTGAACTGTAAAAGCATTCGAGACCTTGGCTTTATTGCTGCAATGGGAAAGGCTGGAGGAGGCCGCAATGAAGTTGACCCAAGATTTATTTCGCTATTCAGTGTCTTCAATGTGCCATTTCCTTCAGAGGAGTCTCTGCATTTAATTTATTCCTCCATCCTGAAAGGCCACACCTCGACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCGATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTGGTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAGGAAATTCTTGAAGAGTATAATGAAAGCAACACCAAAATGAACTTGGTTCTCTTCGACGATGCTCTGGAGCATTTAACCCGGGTGCACCGTATCATCCGCATGGACCGCGGCCACGCCCTGCTGGTCGGGGTAGGGGGCTCAGGGAAGCAGTCTCTTTCGAGGCTGGCTGCCTTCACAGCCAGCTGTGAGGTGTTTGAGATCCTGCTGAGCCGAGGCTACTCGGAGAACAGTTTCCGGGAAGACCTGAAGAGCCTCTATTTGAAACTTGGGATTGAGAACAAAGCGATGATCTTTCTGTTCACGGATGCCCATGTGGCTGAGGAGGGCTTCCTGGAGCTCATCAACAACATGCTGACCTCAGGAATTGTACCTGCGCTTTTTTCTGAAGAGGAGAAAGAGTCTATCCTGAGTCAGATTGGACAGGAAGCTCTGAAGCAAGGCATGGGGCCGGCCAAGGAGTCTGTGTGGCAGTACTTCGTGAACAAAAGTGCAAATAACCTGCACATTGTCCTGGGCATGTCGCCAGTGGGGGACACCCTGAGGACCTGGTGCAGAAACTTCCCAGGTATGGTAAATAACACTGGTATTGACTGGTTCATGCCCTGGCCTCCCCAAGCCCTCCATGCGGTCGCAAAGTCCTTTCTAGGGTATAATCCAATGATCCCGGCAGAAAATATAGAAAATGTGGTGAAGCATGTTGTCTTGGTTCACCAATCCGTGGACCACTACAGCCAACAGTTTCTACAGAAATTGAGGCGCAGCAACTATGTCACTCCCAAGAACTACCTTGATTTTATTAACACCTATTCAAAATTGCTGGATGAGAAAACTCAGTGTAATATAGCTCAGTGCAAGCGTCTGGATGGGGGACTGGACAAGCTGAAGGAGGCCACCATCCAGCTGGACGAGCTGAACCAGAAGCTGGCCGAGCAGAAGATCGTGCTGGCGGAGAAGTCCGCCGCCTGCGAGGCCTTGCTGGAGGAGATCGCCGTCAACACCGCTGTAGCCGAGGAGAAGAAGAAACTGGCAGAGGAAAAGGCCATGGAGATAGAGGAGCAGAACAAAGTCATTGCCATGGAGAAGGCCGAGGCCGAGACGACCCTGGCAGAGGTCATGCCCATCCTGGAGGCCGCCAAGCTGGAACTGCAGAAGCTGGACAAGTCGGACGTGACTGAGATTAGGTCGTTTGCTAAGCCCCCGAAGCAGGTGCAGACGGTCTGCGAATGCATCCTCATCATGAAAGGGTACAAAGAGCTGAACTGGAAAACAGCCAAGGGCGTGATGTCCGACCCGAATTTCCTGCGGTCTCTGATGGAGATTGATTTTGATTCGATTACCCAGAGCCAAGTGAAAAACATCAAAGGCCTCTTGAAGACTCTTAATACCACAACTGAAGAAATGGAAGCTGTCAGCAAAGCCGGGCTGGGGATGCTGAAATTTGTTGAAGCTGTAATGGGCTACTGTGATGTTTTCAGAGAAATCAAGCCCAAAAGAGAGAAGGTGGCCAGGCTGGAGCGGAATTTTTACCTCACTAAACGGGAACTGGAAAGGATCCAGAATGAGTTGGCAGCAATTCAGAAAGAGCTGGAAACATTGGGTGCCAAATATGAGGCCGCCATACTGGAAAAGCAGAAGCTGCAGGAAGAAGCCGAGATCATGGAGAGGCGGCTGATTGCCGCAGACAAACTCATCTCGGGTCTGGGGTCAGAAAACATCAGGTGGCTGAACGACCTGGATGAGCTGATGCACCGGCGCGTGAAGCTGCTGGGGGACTGCCTGCTCTGCGCGGCTTTCCTCAGCTACGAGGGAGCCTTCACCTGGGAGTTCCGTGACGAGATGGTCAATCGGATTTGGCAAAATGACATCCTGGAGCGGGAGATCCCCCTGAGCCAGCCTTTCCGGCTGGAAAGCCTGCTCACGGATGATGTTGAGATCAGCAGATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGGGTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGACAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTGTCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAGGTCTCAGAGAAACTCAAGCTGGCGGAGAAGACAGCCTTGGACATCGACAGGCTGCGGGATGGCTACCGGCCAGCAGCCAGGAGGGGGGCCATCCTGTTCTTCGTCCTGTCTGAGATGGCCCTGGTGAACTCCATGTACCAGTACTCCCTGATTGCCTTCTTAGAGGTCTTCAGGCTGTCACTGAAGAAGTCGCTGCCTGATTCCATCCTCATGAAACGCCTGAGGAACATCATGGACACGCTGACCTTCAGCATCTATAACCACGGCTGCACAGGGCTGTTTGAGAGGCACAAGCTACTCTTTTCTTTTAATATGACCATCAAGATAGAACAAGCAGAAGGGAGAGTCCCTCAAGAAGAACTAGATTTCTTTTTAAAAGGAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAGTGGTATGACCTGGATTCACTGGAGCAGTTTCCCGTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAAGTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTATTTTTGAGCAGAGCACTCCACATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAGGTGGCCCTGCAGCTGCTGGAGACGGCGGTGGCTCGGGGGCAGTGGCTGATGCTGCAGAACTGCCACCTCCTGGTCAAGTGGCTGAAAGATCTGGAGAAGTCCCTGGAGAGGATCACCAAGCCCCACCCAGACTTCCGCCTGTGGCTCACCACGGACCCCACCAAGGGCTTCCCCATTGGGATTCTGCAGAAGTCCCTAAAGGTTGTCACCGAGCCACCCAATGGGCTGAAACTCAACATGAGGGCAACTTACTTCAAGATCTCTCACGAAATGCTGGACCAGTGCCCGCACCCTGCCTTCAAGCCGCTGGTCTACGTGCTGGCGTTCTTTCATGCTGTGGTGCAGGAGAGAAGGAAGTTTGGGAAGATTGGCTGGAACGTGTACTATGACTTCAATGAGTCTGACTTCCAGGTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAGGTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTGAAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAGGGGAATCCAGCAGTGGTATCAGCCGCGATGATTATATTGGCCAAGTGGCCAAAGAAATAGAAAACAAGATGCCCAAAGTCTTTGACTTGGACCAGGTGAGGAAGCGCCTCGGAACAGGACTCTCCCCCACTTCGGTGGTGCTCCTGCAGGAACTGGAACGCTTCAACAAGCTTGTGGTCCGGATGACGAAGTCTCTGGCTGAACTTCAAAGGGCCTTGGCTGGAGAAGTTGGAATGAGCAATGAGTTAGATGATGTGGCCAGGTCTCTTTTTATCGGGCATATCCCTAATATCTGGAGAAGGCTTGCTCCTGACACCTTAAAGTCCCTTGGAAACTGGATGGTCTACTTCCTGCGGCGGTTCAGCCAGTACATGTTGTGGGTGACCGAGAGCGAGCCCAGCGTGATGTGGCTCTCGGGGCTGCACATCCCTGAGTCCTACCTCACGGCGCTGGTGCAGGCCACCTGCCGGAAGAACGGCTGGCCACTGGACCGCTCCACCTTGTTCACACAAGTGACCAAGTTCCAGGATGCAGATGAAGTGAATGAGCGGGCGGGACAAGGATGCTTTGTCTCAGGACTGTACCTGGAAGGTGCTGACTGGGATATAGAAAAAGGATGTCTTATCAAGAGCAAACCCAAGGTGCTGGTTGTGGACCTGCCGATCCTGAAGATCATCCCCATTGAAGCCCATCGCCTCAAGCTGCAGAATACTTTCCGGACCCCCGTCTACACCACCTCCATGAGAAGGAACGCCATGGGAGTCGGCTTGGTTTTTGAAGCTGATCTCTTTACCACGAGGCACATTTCTCACTGGGTGCTGCAAGGAGTATGCCTCACCCTGAATTCTGATTAA MEHVTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVRSS*KCQSSVWRERCLTWQLTRKPLTSWSSV**TG*IRYPQRLRPN*RRHLRVKALWLKLNSGGKEMQP*VRCMNKQSFQ*SEKSWM*SRNPTPCLWLICSQCSPSYSSSTRRPQTMCAFSPPWSVISRT*RTGLASTWSWTPSPP**VPCGWCGSSPDTTTKTRG*FRSWSASPGKSLRESAEWSTCGLCSKKIERVPKAKPWKPGTPSGCGKRPILTPGPR*RLRGGKIGGSLTGSGCSRGRIIWPPSARTSPTFCRFWRNFITYLVQN*RQ*RGTPSALMMSYAEWTA*SPPWKT*PLTPSASSPPSSGNM*WMNSRLKFWLLRKKQNILLMNLLRRFDLLKQHLTCF*NLSTFVHGRLLIDK***NLMIFLHSTVKRLTSLIKSLSRTLKIHHCIRITLQ*QVQYTGNDLCSFGLSIPSSDFKRYKRYWTVIEDRRSNKNIWK*VGQ*RSMKTESMSSGWR*RSRCCQLS*RRAF*PSLPSPQRSLRL*KGELFLQSTFHRLSERLLMKQST*SSWGSLSLN*QEMLLSRKTNSLGTQLGYSACWIIITCS*ER*TMRSLCFSKIIPRNCSECLGRDIRG*TGTH*VSVTI*LVANRPLGNLSLSSTRFIRMQMTFLPG*H**RP*ISLNIQPLKVRKNSQA*RNFLNTLSEKGPATWTTWSGGILPLDHC*PKLRAWSSTPTQARPPSWPPTTNTGKRKFMRS*QSSS*RTCSLLIL*SLEMSLCSTLKPF*RHLRSSFIPTQMRSTRCASIVSGIAWRSPSILFVG*MAAA*NAHLRRGRKRKLL**TFTMISL*TLR*LNKLL*SPKMSTGF*SIL*SIYKNGSGIDLSGNWTKLL*WRNLLPRNLLV*HMMKSCSSIPR*LMRLCATL*LRMSIASDFSSGIWQTQCRKMPSPG*FRLENFSMSQQKRSSIISMKRWSTWPKTLGRSPIPLKISSLSLQQLQKLEVNL*SWNSDIGTSRSDTVPWQCITSFLLMQRKNWLIRLRAYGPICLMIQ*MWSMLLGT*RELSQSLLEAK**TTEFR*RSLQSVFTVKALVLLVMILIKE*SF*VFMKESWQDMKRAVRNWLTLRNFSIFLLQCTQSC*KCRRK*VG*G*FTSSMKD*RLQKKNGLRPFGST*MCRFSRKELKVFSGLSESYLGQSVAYQ*PTTWKQK*RHSKTRFLYFLT*KTRH*ETGIGKNLWKKRLSFLK*PKRSPWKICLLWNCTNTQMFSMRLSQQQSRRLPLRRL*RKS*TRGKI*NSL*SSIAKAHRSEATSWVLLTKLFSLLMTTLSTCRASQEADLWGLFCKLFTNGKKRFL**GKSLRFGCWFRENGCILKVFLLVEI*DHNFRKRQKSLTTSIKYLKGSWVRP*KTP*SRGAVKPQTASVTYRTSARAWRNARKASTTT*IRREMLSQGSSSFLTMSCLAFWGAATHSASRST*SRCTTT*HH*GLMTAIVEKNWCPR*FQQKEKSWSFGRSCGLKGAWRTG*RQF*MR*EELID*LPKRLFLDTVKTEAESTGCSCTRAWWCWPLARCGGPGRWKTSSTKRKKGRSRP*RTMAGKCTGRSMSW*RASPCR*AKTTGKNTTLFSSLMCMPET*LILS*EAVSWRPESLTGKVSCGFIGTGSRMS*TSASAREPLATATSTWA*TAGWSSRPSPIGFT*RSPRRCPCI*VGPPPAQQEPAKPRPPRTWRKPWACSVLSPTVAKAWITGPWGRFSLAWHSAGLGAALMSLIESMLLCSP*SPPRSRRSEML*SIS*PRSSLKGRRFPWTPAWASSSP*TPATQAARSCPSR*RRCSGLWS*SCPTCSRSVRSCSSLRASWRPRLWRKR*RFCISWPGSSCPSSITMILDSEP*NRCWSWLVS*REAPLTLGRTWC**GPCET*TCPNLCLKMFLFSLV*FRICFLGWTALASATLTSTMR*SRSWRRTATRSYPSRWIKWFKCSRPC*PATRRWWWGPPEGASPSSLTLCVRPRPSLG*RQSCTS*TPKP*VS*NSTASWTQPPETGQMGCCQTSSGKSTSQQTRRSESIFYLMVMWMLYGWKT*IL*WMTTGC*HWPTGNASGSKHTVPCSLRLEIYSMPPLQLSLDVEWFMWILKT*NIDHTGKNGLIKYQTRWSNTI*IVSLRSMCPISWM**WKELWMEDKQKS*RQ*FLRQTSIW*PS*PRCWMRC*KEK*KTLTCWSATSWRLCTALWEPPCLRMEG*NLTNISNALLLCLLLTQKEFGPTLGNCQVNFQPCMTFILITNGINGSHGVN*FQSIFMPPRGNSSTSWFTQWIPLGLPGYWNKWLKLSNLLFLLVNLALLRQPLPRISSKI*VKKLTLC*WSTSPPAPRPWISKEI*KQMWKSEPKILTAHPWENACWCSWMT*ICQGWMNMARSSPLPC*SCCWKKATYMTVGRS*TVKAFETLALLLQWERLEEAAMKLTQDLFRYSVSSMCHFLQRSLCI*FIPPS*KATPRRFMRALWL*VAS*HSAR*HFTKILCKTYLPLRQSSITSSTFEISHGFLMVLSSLTRSDSRRWPRW*ESGGMSV*ESSTTG*SVKQTSSWYNST*AAWLWNILKMTWRW**GIPYCLETSRWLCTKENHAFMKTSRTTRRPRLCSRKFLKSIMKATPK*TWFSSTMLWSI*PGCTVSSAWTAATPCWSG*GAQGSSLFRGWLPSQPAVRCLRSC*AEATRRTVSGKT*RASI*NLGLRTKR*SFCSRMPMWLRRASWSSSTTC*PQELYLRFFLKRRKSLS*VRLDRKL*SKAWGRPRSLCGSTS*TKVQITCTLSWACRQWGTP*GPGAETSQVW*ITLVLTGSCPGLPKPSMRSQSPF*GIIQ*SRQKI*KMW*SMLSWFTNPWTTTANSFYRN*GAATMSLPRTTLILLTPIQNCWMRKLSVI*LSASVWMGDWTS*RRPPSSWTS*TRSWPSRRSCWRRSPPPARPCWRRSPSTPL*PRRRRNWQRKRPWR*RSRTKSLPWRRPRPRRPWQRSCPSWRPPSWNCRSWTSRT*LRLGRLLSPRSRCRRSANASSS*KGTKS*TGKQPRA*CPTRISCGL*WRLILIRLPRAK*KTSKAS*RLLIPQLKKWKLSAKPGWGC*NLLKL*WATVMFSEKSSPKERRWPGWSGIFTSLNGNWKGSRMSWQQFRKSWKHWVPNMRPPYWKSRSCRKKPRSWRGG*LPQTNSSRVWGQKTSGG*TTWMS*CTGA*SCWGTACSARLSSATREPSPGSSVTRWSIGFGKMTSWSGRSP*ASLSGWKACSRMMLRSADGDPRAFPPMSSPFRMASSPPGPAASLCVSTPSSRPSTGSREKRRRTICGSLPLMTLTSSSS*RCP*STGPLSCSAMLMNTSIL*LTTS*KKI*KSPKDGSLLSWETRKWTMIQISDCT*TPSWPIPDIPHPCLGKLW*SITLSR*RAWRTSC*ACWWLTRGGSWRSSGSTSSRRPARTRTCSRTWKIPSFGSWPRPRGTCWTMWTWCTPWRRPNPRQQRSQRNSSWRRRQPWTSTGCGMATGQQPGGGPSCSSSCLRWPW*TPCTSTP*LPS*RSSGCH*RSRCLIPSS*NA*GTSWTR*PSASITTAAQGCLRGTSYSFLLI*PSR*NKQKGESLKKN*ISF*KETFPWRKAKEKSPALGCLTKDGKISFFYQKCFQTTLGNFLMMLRIIRLSGRSGMTWIHWSSFPSPWVTITTSPLSRSCLFCAVSVWIGSIGP*LTM*L*QWERSMCSPQ*SALKLFLSRALHIRPLCLS*VLAPTLPLIL*N*QSEVVLEEIASNSLQWVKVKKRWPCSCWRRRWLGGSG*CCRTATSWSSG*KIWRSPWRGSPSPTQTSACGSPRTPPRASPLGFCRSP*RLSPSHPMG*NST*GQLTSRSLTKCWTSARTLPSSRWSTCWRSFMLWCRREGSLGRLAGTCTMTSMSLTSRSAWKF*TRT*RKPSSNGTQGSRGAASST*LERSCMEDGPSTALIAAS*PSTWMSTWGTSFLILSSHSTSSGTRKWTTKSLLVMKRRNLLKPSRPSRLPTRQKCLVSTPTLRLAITRRRLETCGLTCWSCSLRQGNPAVVSAAMIILAKWPKK*KTRCPKSLTWTR*GSASEQDSPPLRWCSCRNWNASTSLWSG*RSLWLNFKGPWLEKLE*AMS*MMWPGLFLSGISLISGEGLLLTP*SPLETGWSTSCGGSASTCCG*PRASPA*CGSRGCTSLSPTSRRWCRPPAGRTAGHWTAPPCSHK*PSSRMQMK*MSGRDKDALSQDCTWKVLTGI*KKDVLSRANPRCWLWTCRS*RSSPLKPIASSCRILSGPPSTPPP*EGTPWESAWFLKLISLPRGTFLTGCCKEYASP*ILI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32532 DNAH10::TCTN2 ENSG00000197653.16::ENSG00000168778.13 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1978 FALSE NA FALSE NA DNAH10 ENSG00000197653.16 protein_coding + + chr12:123762188-123935720:+ chr12:123799371:+ chr12:124246735-124420267:+ chr12:124283918:+ TCTN2 ENSG00000168778.13 protein_coding + + chr12:123671110-123708399:+ chr12:123704532:+ chr12:124155657-124192946:+ chr12:124189079:+ chr12:123800159,chr12:123800159,chr12:123800159 chr12:123699883,chr12:123699844,chr12:123699841 NA NA chr12:124284706,chr12:124284706,chr12:124284706 chr12:124184430,chr12:124184391,chr12:124184388 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_9|102-147|4.8^PDC10_C|258-278|7.3^DHC_N2|287-330|0.19^DHC_N1|308-876|1.6e-156^DHC_N2|342-411|4.1^AAA_22|530-624|4.9^Peptidase_S66C|594-626|7.2^AAA_5|792-859|3.3^Peptidase_S66C|931-1021|0.0018^DHC_N2|1168-1238|0.086^Dynein_heavy|1168-1208|3.7^PDC10_C|1194-1235|0.001^DHC_N2|1373-1777|4.2e-141^PDC10_C|1506-1527|3.7^AAA_6|1912-2238|8.3e-159^AAA_7|1949-1967|0.23^AAA_16|1949-1979|0.079^AAA_18|1949-2022|0.0017^AAA_5|1950-2070|2.1e-06^AAA_22|1950-1983|0.042^AAA|1950-1990|0.00051^RNA_helicase|1950-1970|0.027^RsgA_GTPase|2194-2248|2.2e-05^AAA_16|2216-2267|1^AAA_7|2221-2249|0.013^AAA_22-PARTIAL|2225-2289~|0.012^AAA_5-PARTIAL|2228-2289~|2.9e-09^RNA_helicase|2228-2262|0.029 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.05Mb];LOCAL_REARRANGEMENT:+:[53785] 20 9 20 8.6 ONLY_REF_SPLICE YES_LDAS 0.3885 GT 1.9899 AG 1.9329 ENST00000673944.1 1-2289 ENST00000426174.6 1610-2091 chr12|+|[0]123762337-123762550[0]|[1]123767606-123767689[0]|[1]123771601-123771698[2]|[0]123772834-123772942[0]|[1]123774149-123774264[2]|[0]123781080-123781299[0]|[1]123783107-123783264[2]|[0]123783947-123784177[2]|[0]123785746-123785936[1]|[2]123787804-123788002[2]|[0]123789927-123790121[2]|[0]123793942-123794112[2]|[0]123796656-123796832[2]|[0]123799246-123799371[2]<==>chr12|+|[1]123704532-123704688[1]|[2]123706726-123706851[1]|[2]123706985-123707073[0]|[1]123707604-123707713[2] atggacgacctgcgggtgctgtggatgcgcgaccgcgtgtatgcggctttcggcatcaccgacccccagcttttcgaggacctgctcaaccgcgacgacggccagggcgaggacctcatcttgcacttcctcaaccaggcgagcgaggaggaggggccctcggcgctcttcatctaccgcactatggtgccggaggaggtggaggtggagattgatgagatacctgtcctgtctgaagagggagaagaggaagaagagacttattctcaaaaagtggagtccgtggataaagtgcgagctaagcgtgtgtcactgagaaccgaatctctaggccaacctctaaacagagaggatgaagaaatggacaaagagatttcagaaaaactcccttccaaaagaactgcgaagcacatcatggaaaagatgcatctccacatgctctgtacccctcttcccgaggagttcctggaccaaaacgtggtgtttttcctcagaaataccaaagaggcaatctctgaagctaccgacatgaaggaagctatggaaattatgccagaaacactggagtatggaattataaacgctaatgtgctccattttctgaagaatattatatgtcaggtttttttgccagcattgtccttcaatcagcacaggacgagtacaaccgtgggagtcacatctggagaagtctctaattcctctgagcatgaatcagacctgccgcccatgcctggggaggcagtagaatatcacagtattcaattaatacgggatgaatttttaatgaacgtgcagaaatttgcaagtaatattcaaagaaccatgcagcaacttgaaggtgagatcaagttagaaatgccaatcatcagtgtggagggagaggtgtctgacctggcagctgacccggaaaccgttgacatcttggagcagtgtgtgataaactggctgaatcagatatccacagcggttgaggcccaactgaagaagacacctcagggtaaaggccctctggctgaaattgaattctggagggaaagaaatgcaaccttaagtgcgctgcatgaacaaacaaagcttccaatagtcagaaaagtcttggatgtgatcaaggaatccgactccatgcttgtggctaatctgcagccagtgttcaccgagttattcaagttccacacggaggcctcagacaatgtgcgctttctctccaccgtggagcgttatttcaagaacataacgcacgggtctggcttccacgtggtcctggacaccatccccgccatgatgagtgccctgcggatggtgtggatcatctcccgacactacaacaaagacgagaggatgattccgctcatggagcgcatcgcctgggaaatcgctgagagagtctgccgagtggtcaacctgcggactttgttcaaagaaaatcgagcgagtgcccaaagcaaaaccttggaagccaggaacaccctcaggctgtggaaaaaggcctattttgacacccgggccaagatagaggcttcggggagggaagatcggtgggagtttgaccggaagcggctgttcgagaggacggattatatggccaccatctgccaggacctctccgacgttctgcagattttggaggaattttataacatatttggtccagaactaaaggcagtgacgggggaccccaagcgcattgatgatgtcctatgcagagtggacggcctagtcacccccatggaaaacctgacctttgaccccttcagcatcaagtcctcccagttctggaaatatgtgatggatgaattcaagattgaagttctggttattgagaaagaagcaaaacattttattgatgaatcttttaagacgcttcgatctgctgaagcagcatttgacatgcttttaaaatttaagcacattcgttcacgggaggctgttaatcgacaaatgatgatgaaatttaatgatattcttgcacagtactgtaaagagattgacatcattaataaaatctttgtccagaaccttgaaaatccaccactgtataagaatcaccctccagtagcaggtgcaatatactgggaacgatctctgttctttcggattaagcataccatcctccgatttcaagaggtacaagagatactggacagtgatcgaggacaggaggtcaaacaaaaatatttggaagtaggtaggacaatgaaggagtatgaagacagaaagtatgagcagtggatggaggtgacggagcaggtgctgccagctctcatgaagaagagccttttgaccaagGTGTAGATGCCCCTGATCCAGGTGCAGACCCGCTGGCTAGCAGTGTGAACGGCATGTGCCTGGATATTCCTGCTCACCTGAGCATCCGCATCCTCATCTCGGATGCTGGCGCGGTGGAAGGGATTACTCAGCAGGAGATACTCGGTGTAGAGACAAGGTTCTCCTCAGTGAACTGGCAGTACCAGTGTGGGCTTACCTGTGAGCACAAGGCCGACCTTCTCCCTATCAGTGCATCCGTCCAGTTTATTAAAATTCCTGCACAGTTACCCCACCCCCTGACAAGATTCCAGATCAATTATACAGAGTATGACTGCAACAGAAATGAGGTGTGTTGGCCGCAGCTTCTATATCCATGGACTCAGTATTATCAAGGGGAGCTGCATTCTCAGTGTGTTGCTAAGGGCTTACTGTTGCTGTTGTTCCTCACATTGGCCTTGTTCCTCAGCAACCCCTGGACCAGAATATGCAAAGCCTATAGTTAG MDDLRVLWMRDRVYAAFGITDPQLFEDLLNRDDGQGEDLILHFLNQASEEEGPSALFIYRTMVPEEVEVEIDEIPVLSEEGEEEEETYSQKVESVDKVRAKRVSLRTESLGQPLNREDEEMDKEISEKLPSKRTAKHIMEKMHLHMLCTPLPEEFLDQNVVFFLRNTKEAISEATDMKEAMEIMPETLEYGIINANVLHFLKNIICQVFLPALSFNQHRTSTTVGVTSGEVSNSSEHESDLPPMPGEAVEYHSIQLIRDEFLMNVQKFASNIQRTMQQLEGEIKLEMPIISVEGEVSDLAADPETVDILEQCVINWLNQISTAVEAQLKKTPQGKGPLAEIEFWRERNATLSALHEQTKLPIVRKVLDVIKESDSMLVANLQPVFTELFKFHTEASDNVRFLSTVERYFKNITHGSGFHVVLDTIPAMMSALRMVWIISRHYNKDERMIPLMERIAWEIAERVCRVVNLRTLFKENRASAQSKTLEARNTLRLWKKAYFDTRAKIEASGREDRWEFDRKRLFERTDYMATICQDLSDVLQILEEFYNIFGPELKAVTGDPKRIDDVLCRVDGLVTPMENLTFDPFSIKSSQFWKYVMDEFKIEVLVIEKEAKHFIDESFKTLRSAEAAFDMLLKFKHIRSREAVNRQMMMKFNDILAQYCKEIDIINKIFVQNLENPPLYKNHPPVAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQEVKQKYLEVGRTMKEYEDRKYEQWMEVTEQVLPALMKKSLLTKV*MPLIQVQTRWLAV*TACAWIFLLT*ASASSSRMLARWKGLLSRRYSV*RQGSPQ*TGSTSVGLPVSTRPTFSLSVHPSSLLKFLHSYPTP*QDSRSIIQSMTATEMRCVGRSFYIHGLSIIKGSCILSVLLRAYCCCCSSHWPCSSATPGPEYAKPIV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32534 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1979 TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83161242:- chr6:83857043-83903655:- chr6:83870961:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame malic|79-260|1.4e-83^Malic_M-PARTIAL|270-362~|9.8e-106^Trimer_CC-PARTIAL|358-362~|4.2e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];NEIGHBORS[16453] 16 10 16 4.21 ONLY_REF_SPLICE YES_LDAS 0.2746 GT 1.9656 AG 1.7819 ENST00000369705.4 1-362 ENST00000698602.1 1622-1653 chr6|-|[1]83398367-83398516[2]|[1]83407768-83407901[0]|[2]83430877-83430954[0]<==>chr6|-|[2]83161211-83161242[1] atggagcccgaagccccccgtcgccgccacacccatcagcgcggctacctgctgacacggaaccctcacctcaacaaggacttggcctttaccctggaagagagacagcaattgaacattcatggattgttgccaccttccttcaacagtcaggagatccaggttcttagagtagtaaaaaatttcgagcatctgaactctgactttgacaggtatcttctcttaatggatctccaagatagaaatgaaaaactcttttatagagtgctgacatctgacattgagaaattcatgcctattgtttatactcccactgtgggtctggcttgccaacaatatagtttggtgtttcggaagccaagTAACTAACATCTTGACAAAGAGGATAAACTGA MEPEAPRRRHTHQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPSN*HLDKEDKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32539 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE TRUE 1980 TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83166466:- chr6:83857043-83903655:- chr6:83876185:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame malic|79-260|1.4e-83^Malic_M-PARTIAL|270-362~|9.8e-106^Trimer_CC-PARTIAL|358-362~|4.2e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];NEIGHBORS[16453] 9 17 9 7.67 ONLY_REF_SPLICE YES_LDAS 0.2265 GT 1.9656 AG 1.8892 ENST00000369705.4 1-362 ENST00000512866.5 1622-1701 chr6|-|[1]83398367-83398516[2]|[1]83407768-83407901[0]|[2]83430877-83430954[0]<==>chr6|-|[2]83166387-83166466[1] atggagcccgaagccccccgtcgccgccacacccatcagcgcggctacctgctgacacggaaccctcacctcaacaaggacttggcctttaccctggaagagagacagcaattgaacattcatggattgttgccaccttccttcaacagtcaggagatccaggttcttagagtagtaaaaaatttcgagcatctgaactctgactttgacaggtatcttctcttaatggatctccaagatagaaatgaaaaactcttttatagagtgctgacatctgacattgagaaattcatgcctattgtttatactcccactgtgggtctggcttgccaacaatatagtttggtgtttcggaagccaagGTTATAAAGCAGCAGAGACAACACACAACATCAACAATGCATTTGGCCCAGGAACTGCTAATGAACATACAGTGCCGTGA MEPEAPRRRHTHQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRL*SSRDNTQHQQCIWPRNC**TYSAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32548 ME1::PGM3 ENSG00000065833.9::ENSG00000013375.17 RPMI8226 SRR8616028 SRR8670753 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE lymphoid_neoplasm (plasma_cell_myeloma) primary star-fusion TRUE TRUE FALSE NA TRUE 3651 TRUE 1375 ME1 ENSG00000065833.9 protein_coding - - chr6:83210402-83431051:- chr6:83398367:- chr6:83920121-84140770:- chr6:84108086:- PGM3 ENSG00000013375.17 protein_coding - - chr6:83147324-83193936:- chr6:83166524:- chr6:83857043-83903655:- chr6:83876243:- chr6:83389944,chr6:83389946 chr6:83167242,chr6:83167241 NA NA chr6:84099663,chr6:84099665 chr6:83876961,chr6:83876960 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];NEIGHBORS[16453] 3 18 3 4.41 INCL_NON_REF_SPLICE YES_LDAS 0.1007 GT 1.9656 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32550 USP6NL::UPF2 ENSG00000148429.15::ENSG00000151461.20 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1984 TRUE 3661 TRUE 1379 USP6NL ENSG00000148429.15 protein_coding - - chr10:11460510-11611666:- chr10:11597631:- chr10:11502509-11653665:- chr10:11639630:- UPF2 ENSG00000151461.20 protein_coding - - chr10:11920022-12043170:- chr10:11956523:- chr10:11962021-12085169:- chr10:11998522:- chr10:11537050,chr10:11537052 chr10:11957129,chr10:11957128 NA NA chr10:11579049,chr10:11579051 chr10:11999128,chr10:11999127 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.31Mb] 83 93 83 92.55 ONLY_REF_SPLICE YES_LDAS 3.1622 GT 1.9329 AG 1.8256 ENST00000609104.6 1-4 ENST00000357604.10 2371-3819 chr10|-|[0]11597631-11597634[0]<==>chr10|-|[2]11921298-11921307[2]|[1]11929865-11929985[1]|[0]11931641-11931782[0]|[2]11936545-11936712[0]|[2]11942665-11942763[0]|[2]11943064-11943168[0]|[2]11948369-11948508[1]|[0]11952066-11952249[0]|[2]11955232-11955507[0]|[2]11956320-11956523[0] atgaGTTTTGAGACAGATGCGAAAGCTGCCCTGGCAGGACCAAGAAGTGAAAGACTATGTTATTTGTTGTATGATAAACATCTGGAATGTGAAATATAATAGTATTCATTGTGTAGCCAACCTCTTAGCAGGACTAGTGCTCTACCAAGAGGATGTTGGGATCCACGTTGTGGATGGAGTGTTAGAAGATATTCGATTAGGAATGGAGGTTAATCAACCTAAATTTAATCAGAGGCGCATCAGCAGTGCCAAGTTCTTAGGAGAACTTTACAATTACCGAATGGTGGAATCAGCTGTTATTTTCAGAACTCTGTATTCTTTTACCTCATTTGGTGTTAATCCTGATGGCTCTCCAAGTTCCCTGGACCCACCTGAGCATCTTTTCAGAATTAGACTCGTATGCACTATTCTGGACACATGTGGCCAGTACTTTGACAGAGGTTCCAGTAAACGAAAACTTGATTGTTTCCTTGTATATTTTCAGCGTTATGTTTGGTGGAAGAAAAGTTTGGAGGTTTGGACAAAAGACCATCCATTTCCTATTGATATAGATTACATGATCAGTGATACACTAGAACTGCTAAGACCAAAGATCAAACTCTGTAATTCTCTGGAAGAATCCATCAGGCAGGTACAAGACTTGGAACGAGAATTCTTAATAAAACTAGGCCTAGTAAATGACAAAGACTCAAAAGATTCTATGACAGAAGGAGAAAATCTTGAAGAGGATGAAGAAGAAGAAGAAGGTGGGGCTGAAACAGAAGAACAATCTGGAAATGAAAGTGAAGTAAATGAGCCAGAAGAAGAGGAGGGTTCTGATAATGATGATGATGAGGGAGAAGAAGAGGAGGAAGAGAATACAGATTACCTTACAGATTCCAATAAGGAAAATGAAACCGATGAAGAGAATACTGAGGTAATGATTAAAGGCGGTGGACTTAAGCATGTACCTTGTGTAGAAGATGAGGACTTCATTCAAGCTCTGGATAAAATGATGCTAGAAAATCTACAGCAACGAAGTGGTGAATCTGTTAAAGTGCACCAACTAGATGTTGCCATTCCTTTGCATCTCAAAAGCCAGCTGAGGAAAGGGCCCCCACTGGGAGGTGGGGAAGGAGAGGCTGAGTCTGCAGACACAATGCCGTTTGTCATGTTAACAAGAAAAGGCAATAAACAGCAGTTTAAGATCCTTAATGTACCCATGTCCTCTCAACTTGCTGCAAATCACTGGAACCAGCAACAGGCAGAACAAGAAGAGAGGATGAGAATGAAAAAGCTCACACTAGATATCAATGAACGGCAAGAACAAGAAGATTATCAAGAAATGTTGCAGTCTCTTGCACAGCGCCCAGCTCCAGCAAACACCAATCGTGAGAGGCGGCCTCGCTACCAACATCCGAAGGGAGCACCTAATGCAGATCTAATCTTTAAGACTGGTGGGAGGAGACGTTGA MSFETDAKAALAGPRSERLCYLLYDKHLECEI**YSLCSQPLSRTSALPRGCWDPRCGWSVRRYSIRNGG*ST*I*SEAHQQCQVLRRTLQLPNGGISCYFQNSVFFYLIWC*S*WLSKFPGPT*ASFQN*TRMHYSGHMWPVL*QRFQ*TKT*LFPCIFSALCLVEEKFGGLDKRPSISY*YRLHDQ*YTRTAKTKDQTL*FSGRIHQAGTRLGTRILNKTRPSK*QRLKRFYDRRRKS*RG*RRRRRWG*NRRTIWK*K*SK*ARRRGGF******GRRRGGREYRLPYRFQ*GK*NR*REY*GND*RRWT*ACTLCRR*GLHSSSG*NDARKSTATKW*IC*SAPTRCCHSFASQKPAEERAPTGRWGRRG*VCRHNAVCHVNKKRQ*TAV*DP*CTHVLSTCCKSLEPATGRTRREDENEKAHTRYQ*TARTRRLSRNVAVSCTAPSSSKHQS*EAASLPTSEGST*CRSNL*DWWEETL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 11532831|11653442,11523769 FALSE|FALSE,FALSE 11973781|12056183,11985167 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32551 ABHD12::PYGB ENSG00000100997.20::ENSG00000100994.12 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1987 FALSE NA FALSE NA ABHD12 ENSG00000100997.20 protein_coding - - chr20:25294742-25390835:- chr20:25302219:- chr20:25275378-25371471:- chr20:25282855:- PYGB ENSG00000100994.12 protein_coding + + chr20:25248085-25298012:+ chr20:25295604:+ chr20:25228721-25278648:+ chr20:25276240:+ chr20:25296992,chr20:25296998 chr20:25295203,chr20:25295197 NA NA chr20:25277628,chr20:25277634 chr20:25275839,chr20:25275833 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Abhydrolase_3|9-50|0.41^BD-FAE|9-27|5.5^Abhydrolase_6|18-64|1.9^BD-FAE|166-210|0.005^Abhydrolase_1|169-274|6.3e-18^Hydrolase_4|170-283|2.3e-16^Abhydrolase_11|170-276|9.6e-05^Abhydrolase_6|171-341|2.3e-12^Peptidase_S15|185-236|7.8e-06^Peptidase_S9|191-345|1.5e-06^LIP|191-262|0.00064^Abhydrolase_3|220-285|2.2e-07^Say1_Mug180|221-279|0.00018^Thioesterase|226-271|1.6e-06^Abhydrolase_2|230-256|1.5^Abhydrolase_1|305-343|0.0092^Abhydrolase_2|311-348|0.00052^Hydrolase_4|316-349|3.5e-06^Abhydrolase_11|316-335|0.85^BD-FAE|318-345|0.00025^LIP|322-346|0.25 none ["Klijn_CellLines","DepMap2023"];INTRACHROMOSOMAL[chr20:0.00Mb];NEIGHBORS_OVERLAP:-:+:[3271] 25 17 25 17 ONLY_REF_SPLICE YES_LDAS 0.7565 GT 1.9329 AG 1.8323 ENST00000376542.8 1-1157 ENST00000216962.9 2313-2532 chr20|-|[1]25302219-25302346[0]|[2]25303550-25303628[2]|[1]25306833-25306915[0]|[2]25307966-25308045[1]|[0]25308457-25308494[2]|[1]25309446-25309575[1]|[0]25314925-25314970[0]|[2]25317048-25317078[2]|[1]25320199-25320318[2]|[1]25323325-25323430[1]|[0]25339227-25339351[2]|[1]25390513-25390703[0]<==>chr20|+|[2]25295604-25295670[2]|[0]25296370-25296522[2] atgaggaagcggaccgagcccgtcgccttggagcatgagcgctgcgccgccgcgggctcgtcctcctccggctcggccgccgcggcgctggacgccgactgccgcctgaagcagaacctacgcctgacgggcccggcggcggctgagccgcgctgcgcagccgacgcgggaatgaagcgggcgctgggcaggcgaaagggcgtgtggttgcgcctgaggaagatacttttctgtgttttggggttgtacattgccattccatttctcatcaaactatgtcctggaatacaggccaaactgattttcttgaatttcgtaagagttccctatttcattgatttgaaaaaaccacaggatcaaggtttgaatcacacgtgtaactactacctgcagccagaggaagacgtgaccattggagtctggcacaccgtccctgcagtctggtggaagaacgcccaaggcaaagaccagatgtggtatgaggatgccttggcttccagccaccctatcattctgtacctgcatgggaacgcaggtaccagaggaggcgaccaccgcgtggagctttacaaggtgctgagttcccttggttaccatgtggtcacctttgactacagaggttggggtgactcagtgggaacgccatctgagcggggcatgacctatgacgcactccacgtttttgactggatcaaagcaagaagtggtgacaaccccgtgtacatctggggccactctctgggcactggcgtggcgacaaatctggtgcggcgcctctgtgagcgagagacgcctccagatgcccttatattggaatctccattcactaatatccgcgaagaagctaagagccatccattttcagtgatatatcgatacttccctgggtttgactggttcttccttgatcctattacaagtagtggaattaaatttgcaaatgatgaaaacgtgaagcacatctcctgtcccctgctcatcctgcacgctgaggacgacccggtggtgcccttccagcttggcagaaagctctatagcatcgccgcaccagctcgaagcttccgagatttcaaagttcagtttgtgccctttcattcagaccttggctacaggcacaaatacatttacaagagccctgagctgccacggatactgagGTTCAAGGTGTTTGCAGACTATGAAGCCTACATGCAGTGCCAGGCACAGGTGGACCAGCTGTACCGGAACCCCAAGGAGTGGACCAAGAAGGTCATCAGGAACATCGCCTGCTCGGGCAAGTTCTCCAGTGACCGGACCATCACGGAGTATGCACGGGAGATCTGGGGTGTGGAGCCCTCCGACCTGCAGATCCCGCCCCCCAACATCCCCCGGGACTAG MRKRTEPVALEHERCAAAGSSSSGSAAAALDADCRLKQNLRLTGPAAAEPRCAADAGMKRALGRRKGVWLRLRKILFCVLGLYIAIPFLIKLCPGIQAKLIFLNFVRVPYFIDLKKPQDQGLNHTCNYYLQPEEDVTIGVWHTVPAVWWKNAQGKDQMWYEDALASSHPIILYLHGNAGTRGGDHRVELYKVLSSLGYHVVTFDYRGWGDSVGTPSERGMTYDALHVFDWIKARSGDNPVYIWGHSLGTGVATNLVRRLCERETPPDALILESPFTNIREEAKSHPFSVIYRYFPGFDWFFLDPITSSGIKFANDENVKHISCPLLILHAEDDPVVPFQLGRKLYSIAAPARSFRDFKVQFVPFHSDLGYRHKYIYKSPELPRILRFKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDLQIPPPNIPRD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32552 ATP2C1::LINC01208 ENSG00000017260.20::ENSG00000223715.3 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3663 TRUE 1380 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130932138:+ chr3:130569439-130735556:+ chr3:130650982:+ LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176420996:- chr3:176133227-176585626:- chr3:176138784:- chr3:130934377,chr3:130934376 chr3:176549160,chr3:176549161 NA NA chr3:130653221,chr3:130653220 chr3:176266948,chr3:176266949 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr3:45.59Mb] 17 13 17 6.5 ONLY_REF_SPLICE YES_LDAS 0.4233 GT 1.8323 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32553 ATP2C1::LINC01208 ENSG00000017260.20::ENSG00000223715.3 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3663 TRUE 1380 ATP2C1 ENSG00000017260.20 protein_coding + + chr3:130850595-131016712:+ chr3:130932138:+ chr3:130569439-130735556:+ chr3:130650982:+ LINC01208 ENSG00000223715.3 lncRNA - - chr3:176415439-176867838:- chr3:176491407:- chr3:176133227-176585626:- chr3:176209195:- chr3:130934377,chr3:130934376 chr3:176549160,chr3:176549161 NA NA chr3:130653221,chr3:130653220 chr3:176266948,chr3:176266949 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr3:45.59Mb] 13 17 13 10.5 ONLY_REF_SPLICE YES_LDAS 0.4233 GT 1.8323 AG 1.4716 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32554 USP6NL::UPF2 ENSG00000148429.15::ENSG00000151461.20 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 1985 TRUE 3661 TRUE 1379 USP6NL ENSG00000148429.15 protein_coding - - chr10:11460510-11611666:- chr10:11597631:- chr10:11502509-11653665:- chr10:11639630:- UPF2 ENSG00000151461.20 protein_coding - - chr10:11920022-12043170:- chr10:11948508:- chr10:11962021-12085169:- chr10:11990507:- chr10:11537050,chr10:11537052 chr10:11957129,chr10:11957128 NA NA chr10:11579049,chr10:11579051 chr10:11999128,chr10:11999127 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.31Mb] 10 8 10 0.45 ONLY_REF_SPLICE YES_LDAS 0.1882 GT 1.9329 AG 1.9219 ENST00000609104.6 1-4 ENST00000357604.10 3035-3819 chr10|-|[0]11597631-11597634[0]<==>chr10|-|[2]11921298-11921307[2]|[1]11929865-11929985[1]|[0]11931641-11931782[0]|[2]11936545-11936712[0]|[2]11942665-11942763[0]|[2]11943064-11943168[0]|[2]11948369-11948508[1] atgaGCCTAGTAAATGACAAAGACTCAAAAGATTCTATGACAGAAGGAGAAAATCTTGAAGAGGATGAAGAAGAAGAAGAAGGTGGGGCTGAAACAGAAGAACAATCTGGAAATGAAAGTGAAGTAAATGAGCCAGAAGAAGAGGAGGGTTCTGATAATGATGATGATGAGGGAGAAGAAGAGGAGGAAGAGAATACAGATTACCTTACAGATTCCAATAAGGAAAATGAAACCGATGAAGAGAATACTGAGGTAATGATTAAAGGCGGTGGACTTAAGCATGTACCTTGTGTAGAAGATGAGGACTTCATTCAAGCTCTGGATAAAATGATGCTAGAAAATCTACAGCAACGAAGTGGTGAATCTGTTAAAGTGCACCAACTAGATGTTGCCATTCCTTTGCATCTCAAAAGCCAGCTGAGGAAAGGGCCCCCACTGGGAGGTGGGGAAGGAGAGGCTGAGTCTGCAGACACAATGCCGTTTGTCATGTTAACAAGAAAAGGCAATAAACAGCAGTTTAAGATCCTTAATGTACCCATGTCCTCTCAACTTGCTGCAAATCACTGGAACCAGCAACAGGCAGAACAAGAAGAGAGGATGAGAATGAAAAAGCTCACACTAGATATCAATGAACGGCAAGAACAAGAAGATTATCAAGAAATGTTGCAGTCTCTTGCACAGCGCCCAGCTCCAGCAAACACCAATCGTGAGAGGCGGCCTCGCTACCAACATCCGAAGGGAGCACCTAATGCAGATCTAATCTTTAAGACTGGTGGGAGGAGACGTTGA MSLVNDKDSKDSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 11532831|11653442,11523769 FALSE|FALSE,FALSE 11973781|12056183,11985167 FALSE|FALSE,FALSE PARTIALLY,YES In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32555 KDM6A::ENSG00000283380 ENSG00000147050.18::ENSG00000283380.1 HT29 SRR8616032 SRR8652114 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KDM6A ENSG00000147050.18 protein_coding + + chrX:44873188-45112779:+ chrX:44873987:+ chrX:44732434-44972024:+ chrX:44733233:+ ENSG00000283380 ENSG00000283380.1 lncRNA - - chrX:20769718-21374265:- chrX:21082964:- chrX:20787836-21392383:- chrX:21101082:- chrX:44961295 chrX:21132502 NA NA chrX:44820540 chrX:21150620 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["KDM6A:Oncogene","KDM6A:ArcherDX_panel","KDM6A:FoundationOne_panel"] 4 3 4 3 ONLY_REF_SPLICE YES_LDAS 0.1261 GT 1.9086 AG 1.6049 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific demethylase 6A, UTX 1 Yes renal cell carcinoma, bladder carcinoma, oesophageal SCC, MM, medulloblastoma, T-ALL, other tumour types epithelial, leukaemia_lymphoma oncogene, TSG large_deletion, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 32558 ZNF555::ARHGAP29-AS1 ENSG00000186300.12::ENSG00000226835.4 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF555 ENSG00000186300.12 protein_coding + + chr19:2841437-2860471:+ chr19:2841575:+ chr19:2841435-2860469:+ chr19:2841573:+ ARHGAP29-AS1 ENSG00000226835.4 lncRNA + + chr1:94247819-94411036:+ chr1:94333309:+ chr1:94713375-94876592:+ chr1:94798865:+ chr19:2844467,chr19:2844468 chr1:94285958,chr1:94285956 NA NA chr19:2844465,chr19:2844466 chr1:94751514,chr1:94751512 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 33 1 33 1 ONLY_REF_SPLICE YES_LDAS 0.3404 GT 1.8323 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32560 SMURF1::KPNA7 ENSG00000198742.10::ENSG00000185467.8 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1991 FALSE NA FALSE NA SMURF1 ENSG00000198742.10 protein_coding - - chr7:99027440-99144108:- chr7:99143726:- chr7:98625063-98741731:- chr7:98741349:- KPNA7 ENSG00000185467.8 protein_coding - - chr7:99173572-99250075:- chr7:99185162:- chr7:98771195-98847698:- chr7:98782785:- chr7:99130387 chr7:99188034 NA NA chr7:98728010 chr7:98785657 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame C2-PARTIAL|14-55~|6.3e-21 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.03Mb];LOCAL_REARRANGEMENT:-:[29474] 22 7 22 7 ONLY_REF_SPLICE YES_LDAS 0.2903 GT 1.9899 AG 1.5329 ENST00000361368.7 1-55 ENST00000327442.7 901-1551 chr7|-|[0]99143726-99143780[0]<==>chr7|-|[2]99173708-99173794[0]|[2]99177920-99178066[0]|[2]99181883-99182065[0]|[2]99184929-99185162[0] atgtcgaaccccgggacacgcaggaacggctccagcatcaagatccgtctgacagACTCCTTCTCTCCGCACCGTGGGGAACATTGTCACGGGCACAGATGAGCAGACGCAGATGGCCATTGATGCGGGTATGCTGAACGTGCTCCCCCAGCTCCTGCAACACAACAAGCCCTCCATCCAGAAGGAGGCAGCCTGGGCCCTGAGCAACGTAGCAGCGGGGCCTTGTCACCACATCCAGCAGCTGCTTGCCTACGACGTCTTGCCTCCCTTGGTGGCTCTGCTAAAAAACGGAGAATTTAAAGTCCAGAAAGAGGCTGTCTGGATGGTGGCGAACTTTGCAACAGGGGCCACCATGGATCAGCTGATCCAGCTCGTCCACTCTGGGGTCCTGGAGCCACTGGTGAATCTGCTCACTGCCCCAGATGTTAAAATTGTTCTCATCATCCTTGATGTCATCTCTTGCATCCTCCAGGCGGCAGAGAAACGGTCTGAGAAGGAAAACCTGTGTCTTCTGATAGAAGAACTTGGTGGGATCGATAGAATTGAGGCTTTACAGCTGCATGAGAACCGTCAAATTGGCCAGTCGGCTTTGAACATCATCGAGAAGCACTTTGGTGAGGAAGAAGATGAGAGCCAAACTTTACTGAGCCAAGTCATAGACCAAGATTATGAATTTATAGATTATGAATGCTTAGCAAAAAAATAG MSNPGTRRNGSSIKIRLTDSFSPHRGEHCHGHR*ADADGH*CGYAERAPPAPATQQALHPEGGSLGPEQRSSGALSPHPAAACLRRLASLGGSAKKRRI*SPERGCLDGGELCNRGHHGSADPARPLWGPGATGESAHCPRC*NCSHHP*CHLLHPPGGRETV*EGKPVSSDRRTWWDR*N*GFTAA*EPSNWPVGFEHHREALW*GRR*EPNFTEPSHRPRL*IYRL*MLSKKI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Liver no_match TRUE Liver hepatocellular carcinoma LIVER no_match 98741349 TRUE 98790724 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32562 KRT14::RMDN3 ENSG00000186847.6::ENSG00000137824.16 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA KRT14 ENSG00000186847.6 protein_coding - - chr17:41582279-41586895:- chr17:41583760:- chr17:39738531-39743147:- chr17:39740012:- RMDN3 ENSG00000137824.16 protein_coding - - chr15:40735884-40755851:- chr15:40743539:- chr15:41028082-41048049:- chr15:41035737:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr15] 19 22 19 22 INCL_NON_REF_SPLICE YES_LDAS 0.4104 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32563 MIR3171HG::SLC7A7 ENSG00000258932.5::ENSG00000155465.21 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1989 FALSE NA FALSE NA MIR3171HG ENSG00000258932.5 transcribed_processed_pseudogene - - chr14:27258717-27845286:- chr14:27673029:- chr14:27727923-28314492:- chr14:28142235:- SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- chr14:27664836,chr14:27664836,chr14:27664839,chr14:27664839 chr14:22800728,chr14:22800724,chr14:22800690,chr14:22800728 NA NA chr14:28134042,chr14:28134042,chr14:28134045,chr14:28134045 chr14:23269937,chr14:23269933,chr14:23269899,chr14:23269937 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 14 16 14 ONLY_REF_SPLICE YES_LDAS 0.3004 GT 1.9086 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32566 PPP6C::SCAI ENSG00000119414.12::ENSG00000173611.18 KYSE180 SRR8616037 SRR8652078 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1993 FALSE NA FALSE NA PPP6C ENSG00000119414.12 protein_coding - - chr9:125146573-125189939:- chr9:125189644:- chr9:127908852-127952218:- chr9:127951923:- SCAI ENSG00000173611.18 protein_coding - - chr9:124942608-125143528:- chr9:125020769:- chr9:127704887-127905807:- chr9:127783048:- chr9:125177333,chr9:125177344 chr9:125023827,chr9:125023835 NA NA chr9:127939612,chr9:127939623 chr9:127786106,chr9:127786114 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Metallophos-PARTIAL|47-75~|1.6e-48 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.00Mb];NEIGHBORS[3067] 8 17 8 16.63 ONLY_REF_SPLICE YES_LDAS 0.2466 GT 1.7819 AG 1.9329 ENST00000373547.9 1-75 ENST00000373549.8 582-1890 chr9|-|[2]125189644-125189718[0]<==>chr9|-|[2]124952807-124952953[0]|[2]124971370-124971470[1]|[0]124971671-124971844[1]|[0]124976114-124976186[0]|[2]124994934-124995015[2]|[1]124999891-124999990[1]|[0]125001965-125002043[0]|[2]125003114-125003215[0]|[2]125003469-125003570[0]|[2]125018799-125018951[0]|[2]125019107-125019205[0]|[2]125020673-125020769[2] atggcgccgctagacctggacaagtatgtggaaatagcgcggctgtgcaagtacctgccagagaacgacctgaagACCTGAATTGGTAGTTAAGAAGTTACGATATTATGCAAGATTTATAGTAGTTTGTCTTCTTCTCAACAAAATGGATGTTGTAAAGGATCTGGTAAAGGAATTGTCAGATGAAATTGAAGATTATACTCACCGATTTAATACTGAAGATCAAGTGGAATGGAACTTGGTGCTTCAAGAAGTAGCAGCTTTCATTGAGGCGGATCCTGTAATGGTATTAAATGATGATAATACCATTGTTATCACATCGAATCGCCTTGCTGAAACAGGAGCCCCATTGCTGGAACAGGGCATGATTGTGGGACAGTTGTCTCTGGCTGACGCACTCATTATTGGTAATTGTAATAATCAGGTTAAGTTCAGTGAACTAACTGTTGACATGTTCCGGATGTTACAAGCTCTGGAAAGGGAGCCAATGAATTTAGCTTCCCAGATGAATAAACCAGGAATGCAGGAATCAGCTGACAAGCCTACTAGACGAGAAAACCCCCACAAGTATCTGCTCTACAAACCAACCTTCAGCCAGCTATATACCTTCTTAGCAGCGTCTTTTAAGGAGCTGCCTGCCAATAGCGTGCTTCTGATTTACCTGTCGGCCACTGGCGTTTTCCCCACAGGTCGTTCTGATAGTGAAGGTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTGCCTTCATCCCGGGGATCTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAGAATTTCACAAACTTGTTTGGACAGCCACTAGTCTGCTTGCTTTCTCCTACAGCATATCCAAAAGCTTTACAAGATCAATCTCAGCGAGGTAGCCTCTTCACTCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGATTGTCAAGCATGCGCAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACTCATTCACGTTCAATAGATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTCCTCACAAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGGGAAACACGAAATTATCCAGAATCATATCCACAACTGCCAAGGGATGAAACAGTGGAGAATCCTCATCTCCAGAAGCACATTTTGGAATTAGCATCCATTCTGGATGTTCGAAACGTGTTCTTTGAGAATACCATTGATGACTATTAA MAPLDLDKYVEIARLCKYLPENDLKT*IGS*EVTILCKIYSSLSSSQQNGCCKGSGKGIVR*N*RLYSPI*Y*RSSGMELGASRSSSFH*GGSCNGIK***YHCYHIESPC*NRSPIAGTGHDCGTVVSG*RTHYW*L**SG*VQ*TNC*HVPDVTSSGKGANEFSFPDE*TRNAGIS*QAY*TRKPPQVSALQTNLQPAIYLLSSVF*GAACQ*RASDLPVGHWRFPHRSF***RSL*FWRCTY***PGYY*WRCHPQTKSVPQGNALPSSRGSLSFHQEATVHHCGFV**CCV*EFHKLVWTATSLLAFSYSISKSFTRSISAR*PLHSLFEQSSNGLPICLWIVKHAQRPMGKVSRISSKNQP*YCPATDSFTFNRSGISPVFWR*ISSLAPHKIYLLFSHHEDAQDFSGNTKLSRIISTTAKG*NSGESSSPEAHFGISIHSGCSKRVL*EYH**LL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE protein phosphatase 6, catalytic subunit 1 Yes melanoma epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 32574 GSTP1::CPT1A ENSG00000084207.18::ENSG00000110090.13 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GSTP1 ENSG00000084207.18 protein_coding + + chr11:67583742-67586656:+ chr11:67585241:+ chr11:67351213-67354127:+ chr11:67352712:+ CPT1A ENSG00000110090.13 protein_coding - - chr11:68754620-68844410:- chr11:68762761:- chr11:68522088-68611878:- chr11:68530229:- chr11:67586196,chr11:67586197 chr11:68770209,chr11:68770208 NA NA chr11:67353667,chr11:67353668 chr11:68537677,chr11:68537676 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GST_N|6-74|4.8e-10^GST_N_2|17-75|1.2e-05^GST_C_3|98-196|1.9e-22^GST_C|98-188|2.3e-22^GST_C_2|117-156|3.1e-05^GST_C_2|183-194|0.5 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:1.17Mb] 235 166 235 166 ONLY_REF_SPLICE YES_LDAS 5.8357 GT 1.5656 AG 1.9329 ENST00000398606.10 1-336 ENST00000265641.10 1741-2322 chr11|+|[0]67583844-67583844[0]|[1]67584134-67584169[0]|[1]67584464-67584570[2]|[0]67584685-67584772[0]|[1]67585138-67585241[2]<==>chr11|-|[2]68757644-68757730[0]|[2]68759569-68759661[0]|[2]68760225-68760338[0]|[2]68761535-68761687[0]|[2]68762627-68762761[0] atgccgccctacaccgtggtctatttcccagttcgaggccgctgcgcggccctgcgcatgctgctggcagatcagggccagagctggaaggaggaggtggtgaccgtggagacgtggcaggagggctcactcaaagcctcctgcctatacgggcagctccccaagttccaggacggagacctcaccctgtaccagtccaataccatcctgcgtcacctgggccgcacccttgggctctatgggaaggaccagcaggaggcagccctggtggacatggtgaatgacggcgtggaggacctccgctgcaaatacatctccctcatctacaccaactatGACATGGGCAAGTTTTGCCTCACATACGAGGCCTCCATGACCCGGCTCTTCCGAGAGGGGAGGACGGAGACCGTGCGCTCCTGCACCACTGAGTCATGCGACTTCGTGCGGGCCATGGTGGACCCGGCCCAGACGGTGGAACAGAGGCTGAAGTTGTTCAAGTTGGCGTCTGAGAAGCATCAGCATATGTATCGCCTCGCCATGACCGGCTCTGGGATCGATCGTCACCTCTTCTGCCTTTACGTGGTGTCTAAATATCTCGCTGTGGAGTCCCCTTTCCTTAAGGAAGTTTTATCTGAGCCTTGGAGATTATCAACAAGCCAGACCCCTCAGCAGCAAGTGGAGCTGTTTGACTTGGAGAATAACCCAGAGTACGTGTCCAGCGGAGGGGGCTTTGGACCGGTTGCTGATGACGGCTATGGTGTGTCGTACATCCTTGTGGGAGAGAACCTCATCAATTTCCACATTTCTTCCAAGTTCTCTTGCCCTGAGACGGATTCTCATCGCTTTGGAAGGCACCTGAAAGAAGCAATGACTGACATCATCACTTTGTTTGGTCTCAGTTCTAATTCCAAAAAGTAA MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYDMGKFCLTYEASMTRLFREGRTETVRSCTTESCDFVRAMVDPAQTVEQRLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQTPQQQVELFDLENNPEYVSSGGGFGPVADDGYGVSYILVGENLINFHISSKFSCPETDSHRFGRHLKEAMTDIITLFGLSSNSKK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32577 ATM::DPP3 ENSG00000149311.20::ENSG00000254986.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1996 FALSE NA FALSE NA ATM ENSG00000149311.20 protein_coding + + chr11:108223044-108369102:+ chr11:108223186:+ chr11:108093771-108239829:+ chr11:108093913:+ DPP3 ENSG00000254986.8 protein_coding + + chr11:66480013-66509657:+ chr11:66491253:+ chr11:66247484-66277128:+ chr11:66258724:+ chr11:108224717,chr11:108224714 chr11:66488967,chr11:66488960 NA NA chr11:108095444,chr11:108095441 chr11:66256438,chr11:66256431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ATM:Oncogene","ATM:ArcherDX_panel","ATM:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:41.71Mb] 151 37 151 37 ONLY_REF_SPLICE YES_LDAS 2.736 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine-protein kinase ATM Atypical PIKK ATM Q13315 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ataxia telangiectasia mutated 1 Yes T-PLL leukaemia, lymphoma, medulloblastoma, glioma ataxia-telangiectasia leukaemia_lymphoma, other TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 32579 UVRAG::DYNC2H1 ENSG00000198382.9::ENSG00000187240.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1998 FALSE NA FALSE NA UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75815524:+ chr11:75526255-75855276:+ chr11:75526569:+ DYNC2H1 ENSG00000187240.17 protein_coding + + chr11:103109410-103479863:+ chr11:103358243:+ chr11:102980139-103350591:+ chr11:103228971:+ chr11:75826144,chr11:76047698 chr11:103338669,chr11:103353294 NA NA chr11:75537189,chr11:75758742 chr11:103209397,chr11:103224022 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VPS38-PARTIAL|39-117~|1.2e-10^C2|46-108|3.8e-08 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:26.97Mb] 87 65 87 65 ONLY_REF_SPLICE YES_LDAS 2.212 GT 1.8892 AG 1.8295 ENST00000356136.8 1-117 ENST00000375735.7 12040-12924 chr11|+|[0]75815408-75815524[2]<==>chr11|+|[0]103358243-103358359[2]|[0]103399663-103399872[2]|[0]103435943-103436032[2]|[0]103455186-103455295[1]|[2]103456275-103456356[2]|[0]103468589-103468705[2]|[0]103479095-103479253[2] atgagcgcctccgcgtcggtcgggggccccgtcccccagccacccccgggcccggccgctgctctgcctcccggttctgccgcgcgggccctgcatgtggagctgccgtctcagcagGTTATTTCACAGTTGAGGATTTTGGGCAGATCCATAACAGCTGGTTCCAAATTTGATAGAGAAATCTGGTCTAATGAACTTTCTCCTGTCCTCAATCTCTGGAAGAAACTAAACCAGAATTCAAACCTAATACATCAGAAAGTGCCTCCTCCTAACGATCGACAAGGATCTCCAATACTGTCATTCATCATTCTTGAACAATTTAATGCTATTCGTTTAGTACAAAGTGTCCACCAGTCTCTTGCTGCTCTCAGCAAAGTCATCAGAGGAACTACTTTACTGAGTTCAGAAGTACAAAAATTGGCAAGTGCTTTATTAAACCAAAAGTGTCCTCTCGCATGGCAGAGCAAGTGGGAAGGCCCAGAAGATCCCTTACAATACCTGAGAGGTCTTGTTGCCCGTGCCCTTGCAATACAGAACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAGTGGGTCGTTCTGTGGATAGCCTTAAATTTGTAGCCTCATGGAAAGGTCGACTGCAAGAAGCAAAGCTACAAATTAAGATCAGTGGCTTGTTACTAGAAGGATGTAGTTTTGATGGAAATCAACTTTCTGAAAATCAGCTTGATTCTCCCAGCGTGTCATCAGTGCTCCCTTGTTTTATGGGCTGGATTCCACAGGATGCATGTGGTCCATATTCTCCGGATGAGTGCATCTCTTTGCCTGTTTACACAAGTGCTGAAAGGGATCGTGTGGTTACCAATATTGATGTTCCATGTGGGGGCAACCAAGACCAGTGGATTCAGTGTGGAGCAGCTCTATTCCTAAAAAATCAGTAG MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQVISQLRILGRSITAGSKFDREIWSNELSPVLNLWKKLNQNSNLIHQKVPPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRGTTLLSSEVQKLASALLNQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTFLNALRQETARAVGRSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNQLSENQLDSPSVSSVLPCFMGWIPQDACGPYSPDECISLPVYTSAERDRVVTNIDVPCGGNQDQWIQCGAALFLKNQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32581 UBE2M::EYS ENSG00000130725.8::ENSG00000188107.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE2M ENSG00000130725.8 protein_coding - - chr19:58555712-58558954:- chr19:58558273:- chr19:59067079-59070321:- chr19:59069640:- EYS ENSG00000188107.15 protein_coding - - chr6:63719980-65707226:- chr6:65495993:- chr6:64429876-66417119:- chr6:66205886:- chr19:58558021,chr19:58558023,chr19:58558022,chr19:58558023 chr6:65498765,chr6:65498764,chr6:65498763,chr6:65498763 NA NA chr19:59069388,chr19:59069390,chr19:59069389,chr19:59069390 chr6:66208658,chr6:66208657,chr6:66208656,chr6:66208656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr6] 71 21 71 21 ONLY_REF_SPLICE YES_LDAS 1.3389 GT 1.8892 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32582 RBL1::CA8 ENSG00000080839.12::ENSG00000178538.10 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RBL1 ENSG00000080839.12 protein_coding - - chr20:36996349-37095997:- chr20:37047053:- chr20:35624752-35724400:- chr20:35675456:- CA8 ENSG00000178538.10 protein_coding - - chr8:60185412-60281400:- chr8:60189985:- chr8:61097971-61193959:- chr8:61102544:- chr20:37046339,chr20:37046345 chr8:60207297,chr8:60207300 NA NA chr20:35674742,chr20:35674748 chr8:61119856,chr8:61119859 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RBL1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr8] 64 73 64 73 ONLY_REF_SPLICE YES_LDAS 1.9938 GT 1.4716 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32583 CGAS::EEF1A1-AS1 ENSG00000164430.17::ENSG00000229862.5 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA CGAS ENSG00000164430.17 protein_coding - - chr6:73413515-73452297:- chr6:73445528:- chr6:74123238-74162020:- chr6:74155251:- EEF1A1-AS1 ENSG00000229862.5 lncRNA + + chr6:73523618-73570596:+ chr6:73570287:+ chr6:74233341-74280319:+ chr6:74280010:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 64 83 64 83 ONLY_REF_SPLICE YES_LDAS 2.1393 GT 1.7968 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32584 MB21D2::FGF12 ENSG00000180611.7::ENSG00000114279.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1995 FALSE NA FALSE NA MB21D2 ENSG00000180611.7 protein_coding - - chr3:192796815-192917856:- chr3:192917630:- chr3:192514604-192635645:- chr3:192635419:- FGF12 ENSG00000114279.15 protein_coding - - chr3:192139390-192767764:- chr3:192360538:- chr3:191857179-192485553:- chr3:192078327:- chr3:192846821,chr3:192846825,chr3:192846832 chr3:192401392,chr3:192401393,chr3:192401715 NA NA chr3:192564610,chr3:192564614,chr3:192564621 chr3:192119181,chr3:192119182,chr3:192119504 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PIN_11|55-92|0.00052^Mab-21-PARTIAL|136-211~|1.1e-14 FGF-PARTIAL|~14-136|1.2e-44^Fascin|14-76|5.9e-05^CDtoxinA|22-93|1.7e-05^Fascin|104-122|0.4 ["FGF12:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29051] 51 120 51 120 ONLY_REF_SPLICE YES_LDAS 2.4885 GT 1.7465 AG 1.7056 ENST00000392452.3 1-211 ENST00000683935.1 14-546 chr3|-|[0]192917630-192917840[0]<==>chr3|-|[2]192144009-192144127[1]|[0]192170458-192170656[0]|[2]192335361-192335464[1]|[0]192360428-192360538[1] atgaagatggcggctcccaccgccaacaaggcagcctccctgggctgtaacaacaagcctgcgttcccggagctggatttcaggtcgggagctcgggtggaggaattgaacaaactcatccaagaatttacgaagcacgaccagcgggaatacgacgaccagagagcgctggagattcacacagccaaggatttcatcttttccatgctggAACCCCAGCTCAAAGGGATTGTGACAAGGTTATTCAGCCAGCAGGGATACTTCCTGCAGATGCACCCAGATGGTACCATTGATGGGACCAAGGACGAAAACAGCGACTACACTCTCTTCAATCTAATTCCCGTGGGCCTGCGTGTAGTGGCCATCCAAGGAGTGAAGGCTAGCCTCTATGTGGCCATGAATGGTGAAGGCTATCTCTACAGTTCAGATGTTTTCACTCCAGAATGCAAATTCAAGGAATCTGTGTTTGAAAACTACTATGTGATCTATTCTTCCACACTGTACCGCCAGCAAGAATCAGGCCGAGCTTGGTTTCTGGGACTCAATAAAGAAGGTCAAATTATGAAGGGGAACAGAGTGAAGAAAACCAAGCCCTCATCACATTTTGTACCGAAACCTATTGAAGTGTGTATGTACAGAGAACCATCGCTACATGAAATTGGAGAAAAACAAGGGCGTTCAAGGAAAAGTTCTGGAACACCAACCATGAATGGAGGCAAAGTTGTGAATCAAGATTCAACATAG MKMAAPTANKAASLGCNNKPAFPELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLEPQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIEVCMYREPSLHEIGEKQGRSRKSSGTPTMNGGKVVNQDST* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Mab-21 domain containing 2 2 lung cancer epithelial missense FALSE NA NA NA NA NA NA NA NA NA 32586 TRIM29::UVRAG ENSG00000137699.17::ENSG00000198382.9 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2000 FALSE NA FALSE NA TRIM29 ENSG00000137699.17 protein_coding - - chr11:120111286-120185529:- chr11:120115338:- chr11:119981994-120056237:- chr11:119986046:- UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76065710:+ chr11:75526255-75855276:+ chr11:75776754:+ chr11:120115027,chr11:120115029 chr11:76036323,chr11:76036321 NA NA chr11:119985735,chr11:119985737 chr11:75747367,chr11:75747365 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-B_box|172-196|0.057^zf-B_box|222-259|1.6e-14^Microtub_bind|250-282|0.0017^LRS4|254-368|0.00027^Microtub_bind|315-374|0.0041^zf-B_box|419-425|2.3 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:43.97Mb] 44 21 44 21 ONLY_REF_SPLICE YES_LDAS 0.9459 GT 1.9656 AG 1.8323 ENST00000341846.10 1-1704 ENST00000531818.5 111-984 chr11|-|[2]120115338-120115414[1]|[0]120118223-120118321[1]|[0]120120573-120120665[1]|[0]120122954-120123055[1]|[0]120125691-120125889[0]|[2]120127336-120127569[0]|[2]120128400-120128495[0]|[2]120137228-120138031[0]<==>chr11|+|[2]76065710-76065788[2]|[0]76115924-76116015[1]|[2]76140711-76141413[2] atggaagctgcagatgcctccaggagcaacgggtcgagcccagaagccagggatgcccggagcccgtcgggccccagtggcagcctggagaatggcaccaaggctgacggcaaggatgccaagaccaccaacgggcacggcggggaggcagctgagggcaagagcctgggcagcgccctgaagccaggggaaggtaggagcgccctgttcgcgggcaatgagtggcggcgacccatcatccagtttgtcgagtccggggacgacaagaactccaactacttcagcatggactctatggaaggcaagaggtcgccgtacgcagggctccagctgggggctgccaagaagccacccgttacctttgccgaaaagggcgagctgcgcaagtccattttctcggagtcccggaagcccacggtgtccatcatggagcccggggagacccggcggaacagctacccccgggccgacacgggccttttttcacggtccaagtccggctccgaggaggtgctgtgcgactcctgcatcggcaacaagcagaaggcggtcaagtcctgcctggtgtgccaggcctccttctgcgagctgcatctcaagccccacctggagggcgccgccttccgagaccaccagctgctcgagcccatccgggactttgaggcccgcaagtgtcccgtgcatggcaagacgatggagctcttctgccagaccgaccagacctgcatctgctacctttgcatgttccaggagcacaagaatcatagcaccgtgacagtggaggaggccaaggccgagaaggagacggagctgtcattgcaaaaggagcagctgcagctcaagatcattgagattgaggatgaagctgagaagtggcagaaggagaaggaccgcatcaagagcttcaccaccaatgagaaggccatcctggagcagaacttccgggacctggtgcgggacctggagaagcaaaaggaggaagtgagggctgcgctggagcagcgggagcaggatgctgtggaccaagtgaaggtgatcatggatgctctggatgagagagccaaggtgctgcatgaggacaagcagacccgggagcagctgcatagcatcagcgactctgtgttgtttctgcaggaatttggtgcattgatgagcaattactctctccccccacccctgcccacctatcatgtcctgctggagggggagggcctgggacagtcactaggcaacttcaaggacgacctgctcaatgtatgcatgcgccacgttgagaagatgtgcaaggcggacctgagccgtaacttcattgagaggaaccacatggagaacggtggtgaccatcgctatgtgaacaactacacgaacagcttcgggggtgagtggagtgcaccggacaccatgaagagatactccatgtacctgacacccaaaggtggggtccggacatcataccagccctcgtctcctggccgcttcaccaaggagaccacccagaagaatttcaacaatctctatggcaccaaaggtaactacacctcccgggtctgggagtactcctccagcattcagaactctgacaatgacctgcccgtcgtccaaggcagctcctccttctccctgaaaggctatccctccctcatgcggagccaaagccccaaggcccagccccagacttggaaatctggcaagcagactatgctgGTTTCCACTGTATCCAAAAGGAGGGGAGAAGTTGCAGTTTGATTATGGTGTCTATCTTCTGAACAAAAATATAGCACAGCTAAGATATCAACATGGACTAGGGACTCCAGACTTGCGGCAAACCCTTCCCAACCTGAAAAACTTCATGGAGCATGGACTAATGGTCAGGTGTGACAGACATCACACCTCCAGTGCAATCCCTGTTCCTAAGAGACAAAGCTCCATATTTGGGGGTGCAGATGTAGGCTTCTCTGGGGGGATCCCTTCACCAGACAAAGGACATCGAAAACGGGCCAGCTCTGAGAATGAGAGACTTCAGTACAAAACCCCTCCTCCCAGTTACAACTCAGCATTAGCCCAGCCTGTGACCACCGTCCCCTCCATGGGAGAGACCGAGAGAAAGATAACATCTCTATCCTCCTCCTTGGATACCTCCTTGGACTTCTCCAAAGAAAACAAGAAAAAAGGAGAGGATCTAGTTGGCAGCTTAAACGGAGGCCACGCGAATGTGCACCCTAGCCAAGAACAAGGAGAAGCCCTCTCCGGGCACCGGGCCACAGTCAATGGCACTCTCCTACCCAGCGAGCAGGCCGGGTCCGCCAGTGTCCAGCTTCCAGGCGAGTTCCACCCAGTCTCAGAAGCTGAGCTCTGCTGTACTGTGGAGCAAGCAGAAGAAATCATCGGGCTGGAAGCCACAGGTTTCGCCTCAGGTGATCAGCTAGAAGCATTTAACTGCATCCCAGTGGACAGTGCTGTGGCAGTAGAGTGTGACGAACAAGTTCTGGGAGAATTTGAAGAGTTCTCCCGAAGGATCTATGCACTGAATGAAAACGTATCCAGCTTCCGCCGGCCGCGCAGGAGTTCCGATAAGTGA MEAADASRSNGSSPEARDARSPSGPSGSLENGTKADGKDAKTTNGHGGEAAEGKSLGSALKPGEGRSALFAGNEWRRPIIQFVESGDDKNSNYFSMDSMEGKRSPYAGLQLGAAKKPPVTFAEKGELRKSIFSESRKPTVSIMEPGETRRNSYPRADTGLFSRSKSGSEEVLCDSCIGNKQKAVKSCLVCQASFCELHLKPHLEGAAFRDHQLLEPIRDFEARKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKEQLQLKIIEIEDEAEKWQKEKDRIKSFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQREQDAVDQVKVIMDALDERAKVLHEDKQTREQLHSISDSVLFLQEFGALMSNYSLPPPLPTYHVLLEGEGLGQSLGNFKDDLLNVCMRHVEKMCKADLSRNFIERNHMENGGDHRYVNNYTNSFGGEWSAPDTMKRYSMYLTPKGGVRTSYQPSSPGRFTKETTQKNFNNLYGTKGNYTSRVWEYSSSIQNSDNDLPVVQGSSSFSLKGYPSLMRSQSPKAQPQTWKSGKQTMLVSTVSKRRGEVAV*LWCLSSEQKYSTAKISTWTRDSRLAANPSQPEKLHGAWTNGQV*QTSHLQCNPCS*ETKLHIWGCRCRLLWGDPFTRQRTSKTGQL*E*ETSVQNPSSQLQLSISPACDHRPLHGRDREKDNISILLLGYLLGLLQRKQEKRRGSSWQLKRRPRECAP*PRTRRSPLRAPGHSQWHSPTQRAGRVRQCPASRRVPPSLRS*ALLYCGASRRNHRAGSHRFRLR*SARSI*LHPSGQCCGSRV*RTSSGRI*RVLPKDLCTE*KRIQLPPAAQEFR*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32587 FBXO22::COMMD4 ENSG00000167196.14::ENSG00000140365.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2001 FALSE NA FALSE NA FBXO22 ENSG00000167196.14 protein_coding + + chr15:75903876-75942511:+ chr15:75917394:+ chr15:76196217-76234852:+ chr15:76209735:+ COMMD4 ENSG00000140365.16 protein_coding + + chr15:75336020-75343224:+ chr15:75338062:+ chr15:75628361-75635565:+ chr15:75630403:+ chr15:75928651,chr15:75928647 chr15:75337319,chr15:75337312 NA NA chr15:76220992,chr15:76220988 chr15:75629660,chr15:75629653 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame F-box_4|24-66|2.2e-05^F-box|28-61|2.2e-10^F-box-like|28-58|3.5e-10 COMM_HN-PARTIAL|~4-111|8.8e-49^COMM_domain|128-191|5e-18 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.56Mb] 43 18 43 18 ONLY_REF_SPLICE YES_LDAS 0.8878 GT 1.9219 AG 1.7819 ENST00000453211.6 1-628 ENST00000480484.5 4-600 chr15|+|[0]75903964-75904103[1]|[2]75904491-75904629[2]|[0]75913203-75913290[0]|[1]75914110-75914205[0]|[1]75917230-75917394[0]<==>chr15|+|[0]75338062-75338133[2]|[0]75338355-75338420[2]|[0]75338646-75338685[0]|[1]75338985-75339104[0]|[1]75339264-75339344[0]|[1]75339702-75339878[0]|[1]75339965-75340005[2] atggagccggtaggctgctgcggcgagtgccgcggctcctccgtagacccgcggagcaccttcgtgttgagtaacctggcggaggtggtggagcgtgtgctcaccttcctgcccgccaaggcgttgctgcgggtggcctgcgtgtgccgcttatggagggagtgtgtgcgcagagtattgcggacccatcggagcgtaacctggatctccgcaggcctggcggaggccggccacctggaggggcattgcttggttcgcgtggtagcagaggagcttgagaatgttcgcatcttaccacatacagttctttacatggctgattcagaaactttcattagtctggaagagtgtcgtggccataagagagcaaggaaaagaactagtatggaaacagcacttgcccttgagaagctattccccaaacaatgccaagtccttgggattgtgaccccaggaattgtagtgactccaatgggatcaggtagcaatcgacctcaggaaatagaaattggagaatctggttttgctttattattccctcaaattgaaggaataaaaatacaaccctttcattttattaaggatccaaagaatttaacattagaaagacatcaactcactgaagtagAGGTTCCGGTTCTGTGGTGATCTGGACTGTCCCGACTGGGTCCTGGCAGAAATCAGCACGCTGGCCAAGATGTCCTCTGTGAAGTTGCGGCTGCTCTGCAGCCAGGTACTAAAGGAGCTGCTGGGACAGGGGATTGATTATGAGAAGATCCTGAAGCTCACGGCTGACGCCAAGTTTGAGTCAGGCGATGTGAAGGCCACAGTGGCAGTGCTGAGTTTCATCCTCTCCAGTGCGGCCAAGCACAGTGTCGATGGCGAATCCTTGTCCAGTGAACTGCAGCAGCTGGGGCTGCCCAAAGAGCACGCGGCCAGCCTGTGCCGCTGTTATGAGGAGAAGCAAAGCCCCTTGCAGAAGCACTTGCGGGTCTGCAGCCTACGCATGAATAGGTTGGCAGGTGTGGGCTGGCGGGTGGACTACACCCTGAGCTCCAGCCTGCTGCAATCCGTGGAAGAGCCCATGGTGCACCTGCGGCTGGAGGTGGCAGCTGCCCCAGGGACCCCAGCCCAGCCTGTTGCCATGTCCCTCTCAGCAGACAAGTTCCAGGTCCTCCTGGCAGAACTGAAGCAGGCCCAGACCCTGATGAGCTCCCTGGGCTGA MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVLRTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIKDPKNLTLERHQLTEVEVPVLW*SGLSRLGPGRNQHAGQDVLCEVAAALQPGTKGAAGTGD*L*EDPEAHG*RQV*VRRCEGHSGSAEFHPLQCGQAQCRWRILVQ*TAAAGAAQRARGQPVPLL*GEAKPLAEALAGLQPTHE*VGRCGLAGGLHPELQPAAIRGRAHGAPAAGGGSCPRDPSPACCHVPLSRQVPGPPGRTEAGPDPDELPGL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32588 GDPD5::WNT11 ENSG00000158555.15::ENSG00000085741.14 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2002 FALSE NA FALSE NA GDPD5 ENSG00000158555.15 protein_coding - - chr11:75434640-75525941:- chr11:75448977:- chr11:75145685-75236986:- chr11:75160022:- WNT11 ENSG00000085741.14 protein_coding - - chr11:76186325-76210736:- chr11:76196718:- chr11:75897369-75921780:- chr11:75907762:- chr11:75446553,chr11:75446555,chr11:75446555,chr11:75446859 chr11:76201362,chr11:76201363,chr11:76201362,chr11:76201362 NA NA chr11:75157598,chr11:75157600,chr11:75157600,chr11:75157904 chr11:75912406,chr11:75912407,chr11:75912406,chr11:75912406 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF5079|47-78|0.0021^GDPD|233-351|3.1e-20^GDPD|433-477|0.01^GDPD_2|450-477|1.3e-10^DUF5079|495-519|0.023 wnt-PARTIAL|~84-354|2e-115 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.66Mb] 26 28 26 28 ONLY_REF_SPLICE YES_LDAS 0.7859 GT 1.5628 AG 1.9086 ENST00000529721.5 1-714 ENST00000322563.8 84-1065 chr11|-|[2]75448977-75449122[1]|[0]75449517-75449610[0]|[2]75449885-75449983[0]|[2]75456757-75456816[0]|[2]75457693-75457786[2]|[1]75462786-75462889[0]|[2]75477619-75477735[0]<==>chr11|-|[2]76187065-76187239[2]|[1]76191564-76191856[0]|[2]76194567-76194844[1]|[0]76196483-76196718[2] atggtgagacaccagcccctgcagtactacgagccacagctgtgcctctcctgcctcacgggcatctacggctgccgttggaagcgctaccagcgctcccatgatgataccacaccgtgggagcgcctctggttcctgctcctcaccttcacctttggcctcacgctcacctggctttacttctggtgggaagtccacaatgactatgatgaattcaactggtacctctacaaccgcatgggctactggagcgactggcccgtacccatccttgtgaccacagctgctgccttcgcatacatcgctggcctcctggtcctggcactatgtcacattgccgtggggcagcagatgaacctgcactggctgcacaagatcgggctggtggtcatcctggcttccacggtggtggccatgtcggccgtggcccagctgtgggaggacgagtgggaggtgctgctgatctccctgcagggcacagcgccattcctgcatgtgggggctgtggcagcagtcaccatgctctcctggatcgtggcaggacagttcgcccgcgcagagcggacctcctcccaggtgaccattctctgtaccttcttcaccgtggtgtttgccctctacctggcccctctcaccatctcctctccctgcatcatggagaagaaagacctcggccccaagcctgctctcattggccaccgcggggcccccatgGGCGCTGTCCAAGACACCATCGGCCCTGGCACTGAACCAGACGCAACACTGCAAGCAGCTGGAGGGTCTGGTGTCTGCACAGGTGCAGCTGTGCCGCAGCAACCTGGAGCTCATGCACACGGTGGTGCACGCCGCCCGCGAGGTCATGAAGGCCTGTCGCCGGGCCTTTGCCGACATGCGCTGGAACTGCTCCTCCATTGAGCTCGCCCCCAACTATTTGCTTGACCTGGAGAGAGGGACCCGGGAGTCGGCCTTCGTGTATGCGCTGTCGGCCGCCGCCATCAGCCACGCCATCGCCCGGGCCTGCACCTCCGGCGACCTGCCCGGCTGCTCCTGCGGCCCCGTCCCAGGTGAGCCACCCGGGCCCGGGAACCGCTGGGGAGGATGTGCGGACAACCTCAGCTACGGGCTCCTCATGGGGGCCAAGTTTTCCGATGCTCCTATGAAGGTGAAAAAAACAGGATCCCAAGCCAATAAACTGATGCGTCTACACAACAGTGAAGTGGGGAGACAGGCTCTGCGCGCCTCTCTGGAAATGAAGTGTAAGTGCCATGGGGTGTCTGGCTCCTGCTCCATCCGCACCTGCTGGAAGGGGCTGCAGGAGCTGCAGGATGTGGCTGCTGACCTCAAGACCCGATACCTGTCGGCCACCAAGGTAGTGCACCGACCCATGGGCACCCGCAAGCACCTGGTGCCCAAGGACCTGGATATCCGGCCTGTGAAGGACTCGGAACTCGTCTATCTGCAGAGCTCACCTGACTTCTGCATGAAGAATGAGAAGGTGGGCTCCCACGGGACACAAGACAGGCAGTGCAACAAGACATCCAACGGAAGCGACAGCTGCGACCTTATGTGCTGCGGGCGTGGCTACAACCCCTACACAGACCGCGTGGTCGAGCGGTGCCACTGTAAGTACCACTGGTGCTGCTACGTCACCTGCCGCAGGTGTGAGCGTACCGTGGAGCGCTATGTCTGCAAGTGA MVRHQPLQYYEPQLCLSCLTGIYGCRWKRYQRSHDDTTPWERLWFLLLTFTFGLTLTWLYFWWEVHNDYDEFNWYLYNRMGYWSDWPVPILVTTAAAFAYIAGLLVLALCHIAVGQQMNLHWLHKIGLVVILASTVVAMSAVAQLWEDEWEVLLISLQGTAPFLHVGAVAAVTMLSWIVAGQFARAERTSSQVTILCTFFTVVFALYLAPLTISSPCIMEKKDLGPKPALIGHRGAPMGAVQDTIGPGTEPDATLQAAGGSGVCTGAAVPQQPGAHAHGGARRPRGHEGLSPGLCRHALELLLH*ARPQLFA*PGERDPGVGLRVCAVGRRHQPRHRPGLHLRRPARLLLRPRPR*ATRAREPLGRMCGQPQLRAPHGGQVFRCSYEGEKNRIPSQ*TDASTQQ*SGETGSARLSGNEV*VPWGVWLLLHPHLLEGAAGAAGCGC*PQDPIPVGHQGSAPTHGHPQAPGAQGPGYPACEGLGTRLSAELT*LLHEE*EGGLPRDTRQAVQQDIQRKRQLRPYVLRAWLQPLHRPRGRAVPL*VPLVLLRHLPQV*AYRGALCLQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32589 GIGYF2::DNER ENSG00000204120.16::ENSG00000187957.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2015 FALSE NA FALSE NA GIGYF2 ENSG00000204120.16 protein_coding + + chr2:232697299-232860605:+ chr2:232697392:+ chr2:233562009-233725315:+ chr2:233562102:+ DNER ENSG00000187957.8 protein_coding - - chr2:229357629-229714555:- chr2:229477253:- chr2:230222345-230579271:- chr2:230341969:- chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534,chr2:232699534 chr2:229578357,chr2:229578359,chr2:229578376,chr2:229578382,chr2:229578395,chr2:229578396 NA NA chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244,chr2:233564244 chr2:230443073,chr2:230443075,chr2:230443092,chr2:230443098,chr2:230443111,chr2:230443112 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:2.98Mb] 23 0 23 0 ONLY_REF_SPLICE YES_LDAS 0.3347 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32591 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2003 TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47287229:- chr20:45837859-45985633:- chr20:45915973:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47702670:- chr20:46284941-46415360:- chr20:46331414:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF3544|40-80|0.52^PHD|118-157|1.5e-09^zf-MYND|118-137|5.1^Bromodomain|190-266|9.8e-20^LptF_LptG|243-260|0.56^zf-MYND|281-292|7^PHD|291-301|2^PWWP|307-375|3.6e-10^MUM1-like_PWWP|307-332|5.1e-05^DUF3544|449-646|4.4e-97^DUF3544|679-693|3.2^DUF3544-PARTIAL|774-825~|7 DUF3740|528-664|3.2e-56^DUF3740|693-709|4.2^Mannosyl_trans2|745-793|0.00019^SGSH_C|777-814|0.0045 ["ZMYND8:Oncogene"];["SULF2:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.30Mb] 20 31 20 18.26 ONLY_REF_SPLICE YES_LDAS 0.5568 GT 1.9329 AG 1.8892 ENST00000536340.5 1-825 ENST00000484875.5 416-2613 chr20|-|[2]47287229-47287284[1]|[0]47290187-47290274[0]|[2]47291796-47291888[0]|[2]47294666-47294779[0]|[2]47298729-47298947[0]|[2]47310056-47310204[1]|[0]47347856-47347926[2]|[1]47356380-47356414[0]<==>chr20|-|[2]47658362-47658392[2]|[1]47659399-47659452[2]|[1]47659697-47659730[1]|[0]47661773-47661896[0]|[2]47663070-47663212[1]|[0]47663453-47663622[2]|[1]47664130-47664189[2]|[1]47665199-47665293[0]|[2]47665857-47665953[2]|[1]47666260-47666488[1]|[0]47672198-47672393[0]|[2]47676494-47676623[2]|[1]47677078-47677134[2]|[1]47678676-47678804[2]|[1]47682994-47683169[0]|[2]47684431-47684581[2]|[1]47690126-47690295[0]|[2]47702519-47702670[1] atggtgtttctggaagagtttgaagctagatcctgcttggctgaagaggaaataaaaacagaacaggaggtggtagagggcatggatatctctactcgctccaaagatcctggctctgcagagagaacagcccagaaaagaaagttccccagccctccacattcttccaatggccactcgccgcaggacacatcaacaagccccattaaaaagaaaaagaaacctggcttactgaacagtaacaataaggagcagtcagaactaagacatggtccgttttactatatgaagcagccactcaccacagaccctgttgatgttgtaccgcaggatggacggaatgatttctactgctgggtttgtcaccgggaaggccaagtcctttgctgtgagctctgtccccgggtttatcacgctaagtgtctgagactgacatcggaaccagagggggactggttttgtcctgaatgtgagaaaattacagtagcagaatgcatcgagacccagagtaaagccatgacaatgctcaccattgaacagttatcctacctgctcaagtttgccattcagaaaatgaaacagccagggacagatgcattccagaagcccgttccattggaacagcaccctgactatgcggaatacatcttccatccaatggacctttgtacattggaaaagaatgcgaaaaagaaaatgtatggctgcacagaagccttcctggctgatgcaaagtggattttgcacaactgcatcatttataatgggggaaatcacaaattgacgcaaatagcgaaagtagtcatcaaaatctgtgaacatgagCTTTCTTCGGGAAGTATCTTAATGAATACAACGGCTCCTACGTGCCACCCGGCTGGAAGGAGTGGGTCGGACTCCTTAAAAACTCCCGCTTTTATAACTACACGCTGTGTCGGAACGGGGTGAAAGAGAAGCACGGCTCCGACTACTCCAAGGATTACCTCACAGACCTCATCACCAATGACAGCGTGAGCTTCTTCCGCACGTCCAAGAAGATGTACCCGCACAGGCCAGTCCTCATGGTCATCAGCCATGCAGCCCCCCACGGCCCTGAGGATTCAGCCCCACAATATTCACGCCTCTTCCCAAACGCATCTCAGCACATCACGCCGAGCTACAACTACGCGCCCAACCCGGACAAACACTGGATCATGCGCTACACGGGGCCCATGAAGCCCATCCACATGGAATTCACCAACATGCTCCAGCGGAAGCGCTTGCAGACCCTCATGTCGGTGGACGACTCCATGGAGACGATTTACAACATGCTGGTTGAGACGGGCGAGCTGGACAACACGTACATCGTATACACCGCCGACCACGGTTACCACATCGGCCAGTTTGGCCTGGTGAAAGGGAAATCCATGCCATATGAGTTTGACATCAGGGTCCCGTTCTACGTGAGGGGCCCCAACGTGGAAGCCGGCTGTCTGAATCCCCACATCGTCCTCAACATTGACCTGGCCCCCACCATCCTGGACATTGCAGGCCTGGACATACCTGCGGATATGGACGGGAAATCCATCCTCAAGCTGCTGGACACGGAGCGGCCGGTGAATCGGTTTCACTTGAAAAAGAAGATGAGGGTCTGGCGGGACTCCTTCTTGGTGGAGAGAGGCAAGCTGCTACACAAGAGAGACAATGACAAGGTGGACGCCCAGGAGGAGAACTTTCTGCCCAAGTACCAGCGTGTGAAGGACCTGTGTCAGCGTGCTGAGTACCAGACGGCGTGTGAGCAGCTGGGACAGAAGTGGCAGTGTGTGGAGGACGCCACGGGGAAGCTGAAGCTGCATAAGTGCAAGGGCCCCATGCGGCTGGGCGGCAGCAGAGCCCTCTCCAACCTCGTGCCCAAGTACTACGGGCAGGGCAGCGAGGCCTGCACCTGTGACAGCGGGGACTACAAGCTCAGCCTGGCCGGACGCCGGAAAAAACTCTTCAAGAAGAAGTACAAGGCCAGCTATGTCCGCAGTCGCTCCATCCGCTCAGTGGCCATCGAGGTGGACGGCAGGGTGTACCACGTAGGCCTGGGTGATGCCGCCCAGCCCCGAAACCTCACCAAGCGGCACTGGCCAGGGGCCCCTGAGGACCAAGATGACAAGGATGGTGGGGACTTCAGTGGCACTGGAGGCCTTCCCGACTACTCAGCCGCCAACCCCATTAAAGTGACACATCGGTGCTACATCCTAGAGAACGACACAGTCCAGTGTGACCTGGACCTGTACAAGTCCCTGCAGGCCTGGAAAGACCACAAGCTGCACATCGACCACGAGATTGAAACCCTGCAGAACAAAATTAAGAACCTGAGGGAAGTCCGAGGTCACCTGAAGAAAAAGCGGCCAGAAGAATGTGACTGTCACAAAATCAGCTACCACACCCAGCACAAAGGCCGCCTCAAGCACAGAGGCTCCAGTCTGCATCCTTTCAGGAAGGGCCTGCAAGAGAAGGACAAGGTGTGGCTGTTGCGGGAGCAGAAGCGCAAGAAGAAACTCCGCAAGCTGCTCAAGCGCCTGCAGAACAACGACACGTGCAGCATGCCAGGCCTCACGTGCTTCACCCACGACAACCAGCACTGGCAGACGGCGCCTTTCTGGACACTGGGGCCTTTCTGTGCCTGCACCAGCGCCAACAATAACACGTACTGGTGCATGAGGACCATCAATGAGACTCACAATTTCCTCTTCTGTGAATTTGCAACTGGCTTCCTAGAGTACTTTGATCTCAACACAGACCCCTACCAGCTGATGAATGCAGTGAACACACTGGACAGGGATGTCCTCAACCAGCTACACGTACAGCTCATGGAGCTGAGGAGCTGCAAGGGTTACAAGCAGTGTAACCCCCGGACTCGAAACATGGACCTGGGACTTAAAGATGGAGGAAGCTATGAGCAATACAGGCAGTTTCAGCGTCGAAAGTGGCCAGAAATGAAGAGACCTTCTTCCAAATCACTGGGACAACTGTGGGAAGGCTGGGAAGGTTAA MVFLEEFEARSCLAEEEIKTEQEVVEGMDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHELSSGSILMNTTAPTCHPAGRSGSDSLKTPAFITTRCVGTG*KRSTAPTTPRITSQTSSPMTA*ASSARPRRCTRTGQSSWSSAMQPPTALRIQPHNIHASSQTHLSTSRRATTTRPTRTNTGSCATRGP*SPSTWNSPTCSSGSACRPSCRWTTPWRRFTTCWLRRASWTTRTSYTPPTTVTTSASLAW*KGNPCHMSLTSGSRST*GAPTWKPAV*IPTSSSTLTWPPPSWTLQAWTYLRIWTGNPSSSCWTRSGR*IGFT*KRR*GSGGTPSWWREASCYTRETMTRWTPRRRTFCPSTSV*RTCVSVLSTRRRVSSWDRSGSVWRTPRGS*SCISARAPCGWAAAEPSPTSCPSTTGRAARPAPVTAGTTSSAWPDAGKNSSRRSTRPAMSAVAPSAQWPSRWTAGCTT*AWVMPPSPETSPSGTGQGPLRTKMTRMVGTSVALEAFPTTQPPTPLK*HIGATS*RTTQSSVTWTCTSPCRPGKTTSCTSTTRLKPCRTKLRT*GKSEVT*RKSGQKNVTVTKSATTPSTKAASSTEAPVCILSGRACKRRTRCGCCGSRSARRNSASCSSACRTTTRAACQASRASPTTTSTGRRRLSGHWGLSVPAPAPTITRTGA*GPSMRLTISSSVNLQLAS*STLISTQTPTS**MQ*THWTGMSSTSYTYSSWS*GAARVTSSVTPGLETWTWDLKMEEAMSNTGSFSVESGQK*RDLLPNHWDNCGKAGKV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 FALSE,TRUE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32592 ENSG00000260877::ENSG00000255326 ENSG00000260877.3::ENSG00000255326.1 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 1999 FALSE NA FALSE NA ENSG00000260877 ENSG00000260877.3 lncRNA + + chr11:69299274-69372512:+ chr11:69299428:+ chr11:69066741-69187280:+ chr11:69066895:+ ENSG00000255326 ENSG00000255326.1 lncRNA + + chr11:75583196-75594665:+ chr11:75594101:+ chr11:75294241-75305710:+ chr11:75305146:+ chr11:69314322,chr11:69314323 chr11:75593716,chr11:75593714 NA NA chr11:69081789,chr11:69081790 chr11:75304761,chr11:75304759 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 19 40 19 40 ONLY_REF_SPLICE YES_LDAS 0.8586 GT 1.9086 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32595 OSBPL1A::ULK4 ENSG00000141447.19::ENSG00000168038.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA OSBPL1A ENSG00000141447.19 protein_coding - - chr18:24162045-24397880:- chr18:24239220:- chr18:21742009-21977844:- chr18:21819184:- ULK4 ENSG00000168038.11 protein_coding - - chr3:41246599-41962130:- chr3:41705305:- chr3:41288090-42003622:- chr3:41746797:- chr18:24225495,chr18:24225497 chr3:41709309,chr3:41709308 NA NA chr18:21805459,chr18:21805461 chr3:41750801,chr3:41750800 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ank_3|9-26|0.22^Ank|10-27|0.057^Ank_2|10-109|3.2e-19^Ank_5|13-25|4.1^Ank_4|36-68|1.3e-07^Ank_5|46-88|3.3e-10^Ank|48-78|7.6e-12^Ank_3|48-76|1.5e-08^Ank_4|49-101|7.6e-14^Ank|81-111|2.3e-08^Ank_3|81-106|4.9e-05^Ank_4|82-117|7.7e-07^Ank_5|83-117|0.00011^Oxysterol_BP|118-143|3.4^Ank_4|144-196|4.1e-10^Ank_3|144-171|0.28^Ank|145-173|1.4^Ank_2|146-216|2.3e-11^Ank_5|160-216|4.6e-11^Ank|176-207|7.5e-11^Ank_3|176-203|1.5e-05^Ank_4|195-216|0.096^PH|238-332|3.1e-05^PH_11|244-283|0.0012^YlbD_coat|307-384|0.00045^DUF4298|316-352|1.5^DinB|320-395|0.00031^Oxysterol_BP|349-373|0.65^DUF4298|359-386|1.6^DinB|432-460|0.9^DUF4298|456-484|0.00024^Oxysterol_BP|548-942|3.9e-156^PH|677-698|3.7^PH_11|757-797|1.4^PH|757-815|0.86^YlbD_coat|763-810|0.0021^PH_11|907-920|0.087^PH|909-919|3.5 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr3] 15 14 15 14 ONLY_REF_SPLICE YES_LDAS 0.422 GT 1.9656 AG 1.7056 ENST00000319481.8 1-1444 ENST00000301831.9 2635-3828 chr18|-|[0]24239220-24239382[0]|[2]24280842-24280948[1]|[0]24303637-24303718[0]|[2]24311984-24312106[0]|[2]24314249-24314347[0]|[2]24317149-24317212[2]|[1]24317327-24317400[0]|[2]24318601-24318645[0]|[2]24318748-24318809[1]|[0]24332942-24333086[0]|[2]24334245-24334330[1]|[0]24341547-24341658[0]|[2]24366892-24366966[0]|[2]24368287-24368372[1]|[0]24377413-24377533[0]<==>chr3|-|[2]41246929-41246992[2]|[1]41249489-41249574[0]|[2]41398079-41398264[0]|[2]41455497-41455595[0]|[2]41463087-41463253[1]|[0]41566025-41566130[0]|[2]41615669-41615717[2]|[1]41663607-41663699[2]|[1]41681508-41681652[1]|[0]41681753-41681804[0]|[2]41705057-41705151[1]|[0]41705254-41705305[0] atgaacacagaagcggagcaacagcttctccatcacgccagaaatggcaatgctgaagaagtaagacaactattagagaccatggcgaggaatgaagtgattgctgacattaattgcaaaggaagaagtaagtctaacttgggctggacacctctacatctggcatgctattttggacacagacaagtggtccaggatctgttgaaggctggtgcagaagtgaatgtgttgaatgacatgggagacacgccgcttcatcgagctgcctttacaggacgaaaggagttggtaatgcttctcttagaatataatgctgatactactattgttaatgggagtggacagacagcaaaagaagttactcatgctgaagaaatcagaagcatgcttgaagctgtagaaaggactcaacaaagaaagcttgaagaattacttttagcagcagcaagagaaggcaaaacaacagaactcacagctctgctcaacaggcccaatcctcctgatgttaactgttcggatcagttaggaaatacacccttgcattgtgcagcttaccgggcccataaacaatgtgccttaaagcttctaagaagtggagcagaccctaatctgaagaacaaaaatgatcagaaacctcttgaccttgcccagggtgctgaaatgaaacacattcttgttggtaataaggtcatctacaaagcattgaaacgatatgagggccctctctggaagagttcaagattttttggctggagattattctgggtagtgttagagcatggagtcctttcatggtataggaaacagcctgatgcagttcataatatttatcgccagggatgcaaacacctgactcaagcagtatgcacggtaaaatccactgatagctgcctcttctttattaaatgctttgatgacaccattcatggcttccgggttcctaagaatagccttcagcagtcaagagaggactggctggaagcaatagaagaacattctgcttacagcactcactactgttcccaggaccagctgactgatgaggaggaggaagatacggtttctgctgcagacctgaagaaatcattagagaaagcacagtcatgccaacagcgactagatagggaaatttccaactttctcaaaatgattaaggagtgtgacatggctaaagaaatgcttccatcatttcttcagaaagttgaagttgtctcagaagcttctagagaaacttgtgtagctttgactgattgccttaatctcttcaccaaacaagaaggggtgaggaattttaaattggaacaagagcaagaaaaaaacaaaatcttgtcagaagcactggagacgctggccactgaacatcatgaattagagcagtctctggtgaaaggctctccacccgccagcatccttagcgaggacgagttctatgatgcgctgtcagAGTCATATTAAATCTGTAGACTCAGGAGAAACGAACATAGATGGAGCCATAGGACTGACAGCATCAGAAGAATTTATCAAGATCACATTGTCAGCTTTTGAAGCAATAATACAGTATCCTATTTTATTGAAAGACTATCGCTCCACGGTTGTTGACTATATACTGCCACCCTTGGTGTCCTTGGTTCAAAGCCAAAATGTGGAGTGGAGACTCTTTAGCTTGCGGTTGCTCTCAGAAACCACATCTCTACTCGTGAACCAGGAGTTTGGGGATGGCAAGGAGAAGGCCAGTGTTGATTCTGACAGCAATCTTCTGGCTCTCATTCGAGATGTCTTACTTCCCCAGTATGAGCACATTCTTTTAGAACCTGACCCAGTACCAGCATATGCTCTGAAACTGCTAGTCGCGATGACTGAACACAACCCAACTTTCACAAGACTTGTGGAAGAAAGCAAACTGATCCCACTCATTTTTGAAGTAACTCTGGAACATCAGGAGAGCATTCTGGGTAATACCATGCAAAGTGTGATTGCATTACTCAGCAATCTAGTTGCCTGCAAAGATTCGAATATGGAACTACTTTATGAACAAGGACTTGTCAGTCACATCTGTAACCTGCTCACTGAAACTGCCACACTGTGCTTGGATGTGGACAATAAAAACAACAATGAGATGGCAGCTCCACTGCTCTTTTCCCTGCTTGATATTTTGCACAGCATGCTGACCTATACCTCCGGTATTGTACGGCTGGCTTTGCAGGCCCAGAAGTCTGGCTCAGGAGAGGACCCTCAGGCTGCAGAAGACCTGCTGCTGCTCAACAGACCTCTGACAGACCTGATTAGCCTGCTCATTCCACTGCTTCCTAATGAAGATCCTGAGATTTTTGATGTTTCATCCAAGTGCCTGTCTATACTGGTTCAGCTGTATGGAGGGGAAAACCCGGACAGCCTCTCTCCTGAAAATGTGGAAATTTTTGCTCATTTACTGACATCCAAGGAGGACCCAAAGGAGCAGAAGCTTCTGTTAAGGATTCTCAGAAGAATGATCACCTCCAATGAGAAGCACTTGGAGAGCCTCAAGAATGCAGGCAGCCTCCTGCGGGCTCTGGAGCGGCTGGCCCCTGGGAGTGGTTCATTTGCCGACAGTGCGGTGGCTCCCTTGGCCCTGGAAATCCTCCAAGCCGTTGGGCACTAG MNTEAEQQLLHHARNGNAEEVRQLLETMARNEVIADINCKGRSKSNLGWTPLHLACYFGHRQVVQDLLKAGAEVNVLNDMGDTPLHRAAFTGRKELVMLLLEYNADTTIVNGSGQTAKEVTHAEEIRSMLEAVERTQQRKLEELLLAAAREGKTTELTALLNRPNPPDVNCSDQLGNTPLHCAAYRAHKQCALKLLRSGADPNLKNKNDQKPLDLAQGAEMKHILVGNKVIYKALKRYEGPLWKSSRFFGWRLFWVVLEHGVLSWYRKQPDAVHNIYRQGCKHLTQAVCTVKSTDSCLFFIKCFDDTIHGFRVPKNSLQQSREDWLEAIEEHSAYSTHYCSQDQLTDEEEEDTVSAADLKKSLEKAQSCQQRLDREISNFLKMIKECDMAKEMLPSFLQKVEVVSEASRETCVALTDCLNLFTKQEGVRNFKLEQEQEKNKILSEALETLATEHHELEQSLVKGSPPASILSEDEFYDALSESY*ICRLRRNEHRWSHRTDSIRRIYQDHIVSF*SNNTVSYFIERLSLHGC*LYTATLGVLGSKPKCGVETL*LAVALRNHISTREPGVWGWQGEGQC*F*QQSSGSHSRCLTSPV*AHSFRT*PSTSICSETASRDD*TQPNFHKTCGRKQTDPTHF*SNSGTSGEHSG*YHAKCDCITQQSSCLQRFEYGTTL*TRTCQSHL*PAH*NCHTVLGCGQ*KQQ*DGSSTALFPA*YFAQHADLYLRYCTAGFAGPEVWLRRGPSGCRRPAAAQQTSDRPD*PAHSTAS**RS*DF*CFIQVPVYTGSAVWRGKPGQPLS*KCGNFCSFTDIQGGPKGAEASVKDSQKNDHLQ*EALGEPQECRQPPAGSGAAGPWEWFICRQCGGSLGPGNPPSRWAL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Serine/threonine-protein kinase ULK4 Other ULK Q96C45 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32596 GLCE::PTPN9 ENSG00000138604.10::ENSG00000169410.11 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2004 FALSE NA FALSE NA GLCE ENSG00000138604.10 protein_coding + + chr15:69160584-69272217:+ chr15:69160757:+ chr15:69452923-69564556:+ chr15:69453096:+ PTPN9 ENSG00000169410.11 protein_coding - - chr15:75463251-75579315:- chr15:75490301:- chr15:75755592-75871656:- chr15:75782642:- chr15:69161528,chr15:69161525 chr15:75498237,chr15:75498240 NA NA chr15:69453867,chr15:69453864 chr15:75790578,chr15:75790581 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:6.19Mb] 15 33 15 30.9 ONLY_REF_SPLICE YES_LDAS 0.668 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32600 SPPL2A::TRPM7 ENSG00000138600.11::ENSG00000092439.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2005 FALSE NA FALSE NA SPPL2A ENSG00000138600.11 protein_coding - - chr15:50702266-50765948:- chr15:50739680:- chr15:50994463-51058145:- chr15:51031877:- TRPM7 ENSG00000092439.16 protein_coding - - chr15:50552473-50686797:- chr15:50583159:- chr15:50844670-50978994:- chr15:50875356:- chr15:50739232,chr15:50739237,chr15:50739237 chr15:50586034,chr15:50586007,chr15:50586036 NA NA chr15:51031429,chr15:51031434,chr15:51031434 chr15:50878231,chr15:50878204,chr15:50878233 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PA|72-145|3.6e-13^Pox_EPC_I2-L1|152-182|0.24^Presenilin|196-356|0.0018^Pox_EPC_I2-L1|197-239|4.9e-05^Peptidase_A22B|210-475|1.6e-84^TssO|211-242|0.00078^Presenilin|389-446|6.1e-05^Pox_EPC_I2-L1|419-436|1.2 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:0.02Mb];NEIGHBORS[15451] 9 9 9 8.1 ONLY_REF_SPLICE YES_LDAS 0.2489 GT 1.9329 AG 1.6049 ENST00000698132.1 1-733 ENST00000646667.1 4487-5598 chr15|-|[0]50739680-50739828[2]|[1]50747495-50747628[0]|[2]50748113-50748202[0]|[2]50748688-50748870[0]|[2]50749636-50749746[0]|[2]50765468-50765533[0]<==>chr15|-|[2]50561678-50561808[1]|[0]50569887-50569993[2]|[1]50570104-50570155[1]|[0]50574274-50574479[2]|[1]50574637-50574719[0]|[2]50574852-50575135[1]|[0]50575724-50575789[1]|[0]50575869-50575919[1]|[0]50578639-50578664[2]|[1]50580874-50580908[0]|[2]50583089-50583159[1] atggggccgcagcggcggctgtcccctgccggggccgccctactctggggcttcctgctccagctgacagccgctcaggaagcaatcttgcatgcgtctggaaatggcacaaccaaggactactgcatgctttataacccttattggacagctcttccaagtaccctagaaaatgcaacttccattagtttgatgaatctgacttccacaccactatgcaacctttctgatattcctcctgttggcataaagagcaaagcagttgtggttccatggggaagctgccattttcttgaaaaagccagaattgcacagaaaggaggtgctgaagcaatgttagttgtcaataacagtgtcctatttcctccctcaggtaacagatctgaatttcctgatgtgaaaatactgattgcatttataagctacaaagactttagagatatgaaccagactctaggagataacattactgtgaaaatgtattctccatcgtggcctaactttgattatactatggtggttatttttgtaattgcggtgttcactgtggcattaggtggatactggagtggactagttgaattggaaaacttgaaagcagtgacaactgaagatagagaaatgaggaaaaagaaggaagaatatttaacttttagtcctcttacagttgtaatatttgtggtcatctgctgtgttatgatggtcttactttatttcttctacaaatggttggCAGAAAAAATCAGTAGAAGGCCATCTACCGAAGACACTCATGAAGTAGATTCCAAAGCAGCTTTAATACCGGATTGGTTACAAGATAGACCATCAAACAGAGAAATGCCATCTGAAGAAGGAACATTAAATGGTCTCACTTCTCCATTTAAGCCAGCTATGGATACAAATTACTATTATTCAGCTGTGGAAAGAAATAACTTGATGAGGTTATCACAGAGCATTCCATTTACACCTGTGCCTCCAAGAGGGGAGCCTGTCACAGTGTATCGTTTGGAAGAGAGTTCACCCAACATACTAAATAACAGCATGTCTTCTTGGTCACAACTAGGCCTCTGTGCCAAAATAGAGTTTTTAAGCAAAGAGGAGATGGGAGGAGGTTTACGAAGAGCTGTCAAAGTACAGTGTACCTGGTCAGAACATGATATCCTCAAATCAGGGCATCTTTATATTATCAAATCTTTTCTTCCAGAGGTGGTTAATACATGGTCAAGTATTTACAAAGAAGATACAGTTCTGCATCTCTGTCTGAGAGAAATTCAACAACAGAGAGCAGCACAAAAGCTTACGTTTGCCTTTAATCAAATGAAACCCAAATCCATACCATATTCTCCAAGGTTCCTTGAAGTTTTCCTGCTGTATTGCCATTCAGCAGGACAGTGGTTTGCTGTGGAAGAATGTATGACTGGAGAATTTAGAAAATACAACAATAATAATGGAGATGAGATTATTCCAACTAATACTCTGGAAGAGATCATGCTAGCCTTTAGCCACTGGACTTACGAATATACAAGAGGGGAGTTACTGGTACTTGATTTGCAAGGTGTTGGTGAAAATTTGACTGACCCATCTGTGATAAAAGCAGAAGAAAAGAGATCCTGTGATATGGTTTTTGGCCCAGCAAATCTAGGAGAAGATGCAATTAAAAACTTCAGAGCAAAACATCACTGTAATTCTTGCTGTAGAAAGCTTAAACTTCCAGATCTGAAGAGGAATGATTATACGCCTGATAAAATTATATTTCCTCAGGATGAGCCTTCAGATTTGAATCTTCAGCCTGGAAATTCCACCAAAGAATCAGAATCAACTAATTCTGTTCGTCTGATGTTATAA MGPQRRLSPAGAALLWGFLLQLTAAQEAILHASGNGTTKDYCMLYNPYWTALPSTLENATSISLMNLTSTPLCNLSDIPPVGIKSKAVVVPWGSCHFLEKARIAQKGGAEAMLVVNNSVLFPPSGNRSEFPDVKILIAFISYKDFRDMNQTLGDNITVKMYSPSWPNFDYTMVVIFVIAVFTVALGGYWSGLVELENLKAVTTEDREMRKKKEEYLTFSPLTVVIFVVICCVMMVLLYFFYKWLAEKISRRPSTEDTHEVDSKAALIPDWLQDRPSNREMPSEEGTLNGLTSPFKPAMDTNYYYSAVERNNLMRLSQSIPFTPVPPRGEPVTVYRLEESSPNILNNSMSSWSQLGLCAKIEFLSKEEMGGGLRRAVKVQCTWSEHDILKSGHLYIIKSFLPEVVNTWSSIYKEDTVLHLCLREIQQQRAAQKLTFAFNQMKPKSIPYSPRFLEVFLLYCHSAGQWFAVEECMTGEFRKYNNNNGDEIIPTNTLEEIMLAFSHWTYEYTRGELLVLDLQGVGENLTDPSVIKAEEKRSCDMVFGPANLGEDAIKNFRAKHHCNSCCRKLKLPDLKRNDYTPDKIIFPQDEPSDLNLQPGNSTKESESTNSVRLML* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Transient receptor potential cation channel subfamily M member 7 Atypical Alpha ChaK Q96QT4 TRUE Large_intestine no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32603 UVRAG::ATM ENSG00000198382.9::ENSG00000149311.20 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2006 FALSE NA FALSE NA UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:76016980:+ chr11:75526255-75855276:+ chr11:75728024:+ ATM ENSG00000149311.20 protein_coding + + chr11:108223044-108369102:+ chr11:108288977:+ chr11:108093771-108239829:+ chr11:108159704:+ chr11:76023504 chr11:108288386 NA NA chr11:75734548 chr11:108159113 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame VPS38|39-437|1.2e-10^C2|46-108|3.8e-08^ATG14|185-451|1.4e-17 none ["ATM:Oncogene","ATM:ArcherDX_panel","ATM:FoundationOne_panel"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:32.08Mb] 9 9 9 9 ONLY_REF_SPLICE YES_LDAS 0.262 GT 0.9968 AG 1.9086 ENST00000356136.8 1-1226 ENST00000278616.9 4110-9171 chr11|+|[0]75815408-75815524[2]|[0]75851883-75852000[0]|[1]75861746-75861780[2]|[0]75879879-75880040[2]|[0]75888829-75888903[2]|[0]75911954-75912039[1]|[2]75961444-75961549[2]|[0]75983387-75983513[0]|[1]76004005-76004089[1]|[2]76007534-76007621[2]|[0]76008807-76008867[0]|[1]76016815-76016980[1]<==>chr11|+|[2]108288977-108289103[2]|[0]108289602-108289801[1]|[2]108292619-108292793[2]|[0]108293313-108293477[2]|[0]108294927-108295059[0]|[1]108297287-108297382[0]|[1]108299714-108299885[1]|[2]108301648-108301789[2]|[0]108302853-108303029[2]|[0]108304675-108304852[0]|[1]108307897-108307984[1]|[2]108310160-108310315[1]|[2]108312411-108312498[2]|[0]108315823-108315911[1]|[2]108316011-108316113[2]|[0]108317373-108317521[1]|[2]108319954-108320058[1]|[2]108321301-108321420[1]|[2]108325310-108325544[2]|[0]108326058-108326225[2]|[0]108327645-108327758[2]|[0]108329021-108329238[1]|[2]108330214-108330421[2]|[0]108331444-108331557[2]|[0]108331879-108332037[2]|[0]108332762-108332900[0]|[1]108333886-108333968[2]|[0]108334969-108335109[2]|[0]108335845-108335961[2]|[0]108343222-108343371[2]|[0]108345743-108345908[0]|[1]108347279-108347365[0]|[1]108353766-108353880[1]|[2]108354811-108354874[2]|[0]108365082-108365218[1]|[2]108365325-108365508[2] atgagcgcctccgcgtcggtcgggggccccgtcccccagccacccccgggcccggccgctgctctgcctcccggttctgccgcgcgggccctgcatgtggagctgccgtctcagcagcggcgtcttcgacatcttcggaacattgctgcccggaacattgttaatagaaatggccatcagctccttgatacctactttacacttcacttgtgtagtactgaaaagatatataaagaattttatagaagtgaagtgattaagaattccttgaatcccacgtggcgaagtctcgattttggaattatgccagaccgtcttgatacatctgtgtcttgtttcgtggtgaagatatggggtggaaaggagaacatctaccagctgttgattgaatggaaagtctgtttggatgggctgaaatacttgggtcagcagattcatgcccgaaaccaaaatgaaataatttttgggctgaatgatggatactatggtgctccatttgaacataagggttattcaaatgctcagaagactattcttctgcaggtggatcagaactgtgttcgcaattcttacgatgtcttctctttgctacggcttcatagagcccagtgtgcaattaaacagactcaggtaactgttcagaaaattggaaaggaaattgaagaaaaactaagactcacatctacaagcaatgaactgaaaaaaaaaagtgaatgcctgcagttaaaaattttggtgcttcagaatgaactggaacggcagaagaaagctttgggacgggaggtggcattactgcataagcaacaaattgcattacaagacaaaggaagtgcattttcagctgagcacctcaaacttcaactccagaaggaatccctaaatgagctgaggaaggagtgcactgcaaaaagagaactcttcttgaagactaatgctcagttgacaattcgttgcaggcagttactctctgagctttcctacatttaccctattgatttgaatgaacataaggattactttgtatgcggtgtcaagttgcctaattctgaggacttccaagcaaaagatgatggaagcattgctgttgcccttggttatactgcacatctggtctccatgatttcctttttcctacaagtgcccctcagatatcctataattcataaggggtctagatcaacaatcaaagacaatatcaatgacaaactgacggaaaaggagagagaGGATTTGGATCCTGCTCCTAATCCACCTCATTTTCCATCGCATGTGATTAAAGCAACATTTGCCTATATCAGCAATTGTCATAAAACCAAGTTAAAAAGCATTTTAGAAATTCTTTCCAAAAGCCCTGATTCCTATCAGAAAATTCTTCTTGCCATATGTGAGCAAGCAGCTGAAACAAATAATGTTTATAAGAAGCACAGAATTCTTAAAATATATCACCTGTTTGTTAGTTTATTACTGAAAGATATAAAAAGTGGCTTAGGAGGAGCTTGGGCCTTTGTTCTTCGAGACGTTATTTATACTTTGATTCACTATATCAACCAAAGGCCTTCTTGTATCATGGATGTGTCATTACGTAGCTTCTCCCTTTGTTGTGACTTATTAAGTCAGGTTTGCCAGACAGCCGTGACTTACTGTAAGGATGCTCTAGAAAACCATCTTCATGTTATTGTTGGTACACTTATACCCCTTGTGTATGAGCAGGTGGAGGTTCAGAAACAGGTATTGGACTTGTTGAAATACTTAGTGATAGATAACAAGGATAATGAAAACCTCTATATCACGATTAAGCTTTTAGATCCTTTTCCTGACCATGTTGTTTTTAAGGATTTGCGTATTACTCAGCAAAAAATCAAATACAGTAGAGGACCCTTTTCACTCTTGGAGGAAATTAACCATTTTCTCTCAGTAAGTGTTTATGATGCACTTCCATTGACAAGACTTGAAGGACTAAAGGATCTTCGAAGACAACTGGAACTACATAAAGATCAGATGGTGGACATTATGAGAGCTTCTCAGGATAATCCGCAAGATGGGATTATGGTGAAACTAGTTGTCAATTTGTTGCAGTTATCCAAGATGGCAATAAACCACACTGGTGAAAAAGAAGTTCTAGAGGCTGTTGGAAGCTGCTTGGGAGAAGTGGGTCCTATAGATTTCTCTACCATAGCTATACAACATAGTAAAGATGCATCTTATACCAAGGCCCTTAAGTTATTTGAAGATAAAGAACTTCAGTGGACCTTCATAATGCTGACCTACCTGAATAACACACTGGTAGAAGATTGTGTCAAAGTTCGATCAGCAGCTGTTACCTGTTTGAAAAACATTTTAGCCACAAAGACTGGACATAGTTTCTGGGAGATTTATAAGATGACAACAGATCCAATGCTGGCCTATCTACAGCCTTTTAGAACATCAAGAAAAAAGTTTTTAGAAGTACCCAGATTTGACAAAGAAAACCCTTTTGAAGGCCTGGATGATATAAATCTGTGGATTCCTCTAAGTGAAAATCATGACATTTGGATAAAGACACTGACTTGTGCTTTTTTGGACAGTGGAGGCACAAAATGTGAAATTCTTCAATTATTAAAGCCAATGTGTGAAGTGAAAACTGACTTTTGTCAGACTGTACTTCCATACTTGATTCATGATATTTTACTCCAAGATACAAATGAATCATGGAGAAATCTGCTTTCTACACATGTTCAGGGATTTTTCACCAGCTGTCTTCGACACTTCTCGCAAACGAGCCGATCCACAACCCCTGCAAACTTGGATTCAGAGTCAGAGCACTTTTTCCGATGCTGTTTGGATAAAAAATCACAAAGAACAATGCTTGCTGTTGTGGACTACATGAGAAGACAAAAGAGACCTTCTTCAGGAACAATTTTTAATGATGCTTTCTGGCTGGATTTAAATTATCTAGAAGTTGCCAAGGTAGCTCAGTCTTGTGCTGCTCACTTTACAGCTTTACTCTATGCAGAAATCTATGCAGATAAGAAAAGTATGGATGATCAAGAGAAAAGAAGTCTTGCATTTGAAGAAGGAAGCCAGAGTACAACTATTTCTAGCTTGAGTGAAAAAAGTAAAGAAGAAACTGGAATAAGTTTACAGGATCTTCTCTTAGAAATCTACAGAAGTATAGGGGAGCCAGATAGTTTGTATGGCTGTGGTGGAGGGAAGATGTTACAACCCATTACTAGACTACGAACATATGAACACGAAGCAATGTGGGGCAAAGCCCTAGTAACATATGACCTCGAAACAGCAATCCCCTCATCAACACGCCAGGCAGGAATCATTCAGGCCTTGCAGAATTTGGGACTCTGCCATATTCTTTCCGTCTATTTAAAAGGATTGGATTATGAAAATAAAGACTGGTGTCCTGAACTAGAAGAACTTCATTACCAAGCAGCATGGAGGAATATGCAGTGGGACCATTGCACTTCCGTCAGCAAAGAAGTAGAAGGAACCAGTTACCATGAATCATTGTACAATGCTCTACAATCTCTAAGAGACAGAGAATTCTCTACATTTTATGAAAGTCTCAAATATGCCAGAGTAAAAGAAGTGGAAGAGATGTGTAAGCGCAGCCTTGAGTCTGTGTATTCGCTCTATCCCACACTTAGCAGGTTGCAGGCCATTGGAGAGCTGGAAAGCATTGGGGAGCTTTTCTCAAGATCAGTCACACATAGACAACTCTCTGAAGTATATATTAAGTGGCAGAAACACTCCCAGCTTCTCAAGGACAGTGATTTTAGTTTTCAGGAGCCTATCATGGCTCTACGCACAGTCATTTTGGAGATCCTGATGGAAAAGGAAATGGACAACTCACAAAGAGAATGTATTAAGGACATTCTCACCAAACACCTTGTAGAACTCTCTATACTGGCCAGAACTTTCAAGAACACTCAGCTCCCTGAAAGGGCAATATTTCAAATTAAACAGTACAATTCAGTTAGCTGTGGAGTCTCTGAGTGGCAGCTGGAAGAAGCACAAGTATTCTGGGCAAAAAAGGAGCAGAGTCTTGCCCTGAGTATTCTCAAGCAAATGATCAAGAAGTTGGATGCCAGCTGTGCAGCGAACAATCCCAGCCTAAAACTTACATACACAGAATGTCTGAGGGTTTGTGGCAACTGGTTAGCAGAAACGTGCTTAGAAAATCCTGCGGTCATCATGCAGACCTATCTAGAAAAGGCAGTAGAAGTTGCTGGAAATTATGATGGAGAAAGTAGTGATGAGCTAAGAAATGGAAAAATGAAGGCATTTCTCTCATTAGCCCGGTTTTCAGATACTCAATACCAAAGAATTGAAAACTACATGAAATCATCGGAATTTGAAAACAAGCAAGCTCTCCTGAAAAGAGCCAAAGAGGAAGTAGGTCTCCTTAGGGAACATAAAATTCAGACAAACAGATACACAGTAAAGGTTCAGCGAGAGCTGGAGTTGGATGAATTAGCCCTGCGTGCACTGAAAGAGGATCGTAAACGCTTCTTATGTAAAGCAGTTGAAAATTATATCAACTGCTTATTAAGTGGAGAAGAACATGATATGTGGGTATTCCGACTTTGTTCCCTCTGGCTTGAAAATTCTGGAGTTTCTGAAGTCAATGGCATGATGAAGAGAGACGGAATGAAGATTCCAACATATAAATTTTTGCCTCTTATGTACCAATTGGCTGCTAGAATGGGGACCAAGATGATGGGAGGCCTAGGATTTCATGAAGTCCTCAATAATCTAATCTCTAGAATTTCAATGGATCACCCCCATCACACTTTGTTTATTATACTGGCCTTAGCAAATGCAAACAGAGATGAATTTCTGACTAAACCAGAGGTAGCCAGAAGAAGCAGAATAACTAAAAATGTGCCTAAACAAAGCTCTCAGCTTGATGAGGATCGAACAGAGGCTGCAAATAGAATAATATGTACTATCAGAAGTAGGAGACCTCAGATGGTCAGAAGTGTTGAGGCACTTTGTGATGCTTATATTATATTAGCAAACTTAGATGCCACTCAGTGGAAGACTCAGAGAAAAGGCATAAATATTCCAGCAGACCAGCCAATTACTAAACTTAAGAATTTAGAAGATGTTGTTGTCCCTACTATGGAAATTAAGGTGGACCACACAGGAGAATATGGAAATCTGGTGACTATACAGTCATTTAAAGCAGAATTTCGCTTAGCAGGAGGTGTAAATTTACCAAAAATAATAGATTGTGTAGGTTCCGATGGCAAGGAGAGGAGACAGCTTGTTAAGGGCCGTGATGACCTGAGACAAGATGCTGTCATGCAACAGGTCTTCCAGATGTGTAATACATTACTGCAGAGAAACACGGAAACTAGGAAGAGGAAATTAACTATCTGTACTTATAAGGTGGTTCCCCTCTCTCAGCGAAGTGGTGTTCTTGAATGGTGCACAGGAACTGTCCCCATTGGTGAATTTCTTGTTAACAATGAAGATGGTGCTCATAAAAGATACAGGCCAAATGATTTCAGTGCCTTTCAGTGCCAAAAGAAAATGATGGAGGTGCAAAAAAAGTCTTTTGAAGAGAAATATGAAGTCTTCATGGATGTTTGCCAAAATTTTCAACCAGTTTTCCGTTACTTCTGCATGGAAAAATTCTTGGATCCAGCTATTTGGTTTGAGAAGCGATTGGCTTATACGCGCAGTGTAGCTACTTCTTCTATTGTTGGTTACATACTTGGACTTGGTGATAGACATGTACAGAATATCTTGATAAATGAGCAGTCAGCAGAACTTGTACATATAGATCTAGGTGTTGCTTTTGAACAGGGCAAAATCCTTCCTACTCCTGAGACAGTTCCTTTTAGACTCACCAGAGATATTGTGGATGGCATGGGCATTACGGGTGTTGAAGGTGTCTTCAGAAGATGCTGTGAGAAAACCATGGAAGTGATGAGAAACTCTCAGGAAACTCTGTTAACCATTGTAGAGGTCCTTCTATATGATCCACTCTTTGACTGGACCATGAATCCTTTGAAAGCTTTGTATTTACAGCAGAGGCCGGAAGATGAAACTGAGCTTCACCCTACTCTGAATGCAGATGACCAAGAATGCAAACGAAATCTCAGTGATATTGACCAGAGTTTCAACAAAGTAGCTGAACGTGTCTTAATGAGACTACAAGAGAAACTGAAAGGAGTGGAAGAAGGCACTGTGCTCAGTGTTGGTGGACAAGTGAATTTGCTCATACAGCAGGCCATAGACCCCAAAAATCTCAGCCGACTTTTCCCAGGATGGAAAGCTTGGGTGTGA MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCSTEKIYKEFYRSEVIKNSLNPTWRSLDFGIMPDRLDTSVSCFVVKIWGGKENIYQLLIEWKVCLDGLKYLGQQIHARNQNEIIFGLNDGYYGAPFEHKGYSNAQKTILLQVDQNCVRNSYDVFSLLRLHRAQCAIKQTQVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNELERQKKALGREVALLHKQQIALQDKGSAFSAEHLKLQLQKESLNELRKECTAKRELFLKTNAQLTIRCRQLLSELSYIYPIDLNEHKDYFVCGVKLPNSEDFQAKDDGSIAVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKDNINDKLTEKEREDLDPAPNPPHFPSHVIKATFAYISNCHKTKLKSILEILSKSPDSYQKILLAICEQAAETNNVYKKHRILKIYHLFVSLLLKDIKSGLGGAWAFVLRDVIYTLIHYINQRPSCIMDVSLRSFSLCCDLLSQVCQTAVTYCKDALENHLHVIVGTLIPLVYEQVEVQKQVLDLLKYLVIDNKDNENLYITIKLLDPFPDHVVFKDLRITQQKIKYSRGPFSLLEEINHFLSVSVYDALPLTRLEGLKDLRRQLELHKDQMVDIMRASQDNPQDGIMVKLVVNLLQLSKMAINHTGEKEVLEAVGSCLGEVGPIDFSTIAIQHSKDASYTKALKLFEDKELQWTFIMLTYLNNTLVEDCVKVRSAAVTCLKNILATKTGHSFWEIYKMTTDPMLAYLQPFRTSRKKFLEVPRFDKENPFEGLDDINLWIPLSENHDIWIKTLTCAFLDSGGTKCEILQLLKPMCEVKTDFCQTVLPYLIHDILLQDTNESWRNLLSTHVQGFFTSCLRHFSQTSRSTTPANLDSESEHFFRCCLDKKSQRTMLAVVDYMRRQKRPSSGTIFNDAFWLDLNYLEVAKVAQSCAAHFTALLYAEIYADKKSMDDQEKRSLAFEEGSQSTTISSLSEKSKEETGISLQDLLLEIYRSIGEPDSLYGCGGGKMLQPITRLRTYEHEAMWGKALVTYDLETAIPSSTRQAGIIQALQNLGLCHILSVYLKGLDYENKDWCPELEELHYQAAWRNMQWDHCTSVSKEVEGTSYHESLYNALQSLRDREFSTFYESLKYARVKEVEEMCKRSLESVYSLYPTLSRLQAIGELESIGELFSRSVTHRQLSEVYIKWQKHSQLLKDSDFSFQEPIMALRTVILEILMEKEMDNSQRECIKDILTKHLVELSILARTFKNTQLPERAIFQIKQYNSVSCGVSEWQLEEAQVFWAKKEQSLALSILKQMIKKLDASCAANNPSLKLTYTECLRVCGNWLAETCLENPAVIMQTYLEKAVEVAGNYDGESSDELRNGKMKAFLSLARFSDTQYQRIENYMKSSEFENKQALLKRAKEEVGLLREHKIQTNRYTVKVQRELELDELALRALKEDRKRFLCKAVENYINCLLSGEEHDMWVFRLCSLWLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGTKMMGGLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFLTKPEVARRSRITKNVPKQSSQLDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDATQWKTQRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGEYGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNEDGAHKRYRPNDFSAFQCQKKMMEVQKKSFEEKYEVFMDVCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDETELHPTLNADDQECKRNLSDIDQSFNKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine-protein kinase ATM Atypical PIKK ATM Q13315 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ataxia telangiectasia mutated 1 Yes T-PLL leukaemia, lymphoma, medulloblastoma, glioma ataxia-telangiectasia leukaemia_lymphoma, other TSG large_deletion, missense, nonsense, frameshift, splice_site 32607 MTO1::CD109 ENSG00000135297.17::ENSG00000156535.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2017 TRUE 3712 TRUE 1409 MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73497896:+ chr6:74171301-74218959:+ chr6:74207619:+ CD109 ENSG00000156535.15 protein_coding + + chr6:73695785-73828316:+ chr6:73723251:+ chr6:74405508-74538040:+ chr6:74432974:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pyr_redox_3|35-68|0.00014^AlaDh_PNT_C|36-75|1.6e-06^Pyr_redox_2|37-70|5.5e-08^HI0933_like|37-68|7.9e-06^GIDA|38-420|3.7e-148^FAD_oxidored|38-77|3.8e-10^FAD_binding_2|38-70|6.8e-08^DAO|38-74|0.00018^Pyr_redox|39-73|1.8e-05^GIDA_C|61-76|3.5^FAD_binding_2|153-209|0.094^DAO|172-200|0.35^Pyr_redox_3|180-196|1.8^HI0933_like|379-408|0.2^GIDA|451-475|0.014^GIDA_C_1st|538-632|1.3e-15^GIDA_C|642-698|3.3e-23 MG3-PARTIAL|~248-300|4.1e-24^MG4|248-299|0.57^MG4|351-447|0.0003^MG2|369-383|1.2^A2M|401-427|1^A2M_BRD|469-599|1.7e-28^A2M_recep|555-580|3.5^A2M|562-587|0.44^MG2|566-586|3.4^A2M|693-782|2e-31^TED_complement|897-1194|5.1e-94^MG2|1185-1214|3.5^A2M_recep|1310-1396|2.4e-27 ["CD109:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.19Mb] 6 5 6 2.73 ONLY_REF_SPLICE YES_LDAS 0.127 GT 1.9329 AG 1.9329 ENST00000415954.6 1-2037 ENST00000287097.6 248-4338 chr6|+|[0]73461855-73462071[0]|[1]73466209-73466408[2]|[0]73466489-73466606[0]|[1]73473365-73473654[2]|[0]73479732-73479844[1]|[2]73479936-73480126[0]|[1]73480675-73480805[2]|[0]73480997-73481116[2]|[0]73482040-73482244[0]|[1]73482449-73482620[1]|[2]73492234-73492352[0]|[1]73497736-73497896[2]<==>chr6|+|[1]73723251-73723279[2]|[0]73730344-73730574[2]|[0]73736383-73736508[2]|[0]73756643-73756682[0]|[1]73758944-73759028[1]|[2]73762384-73762480[2]|[0]73762741-73762882[0]|[1]73763576-73763685[2]|[0]73765930-73766154[2]|[0]73766759-73766860[2]|[0]73766948-73767010[2]|[0]73768055-73768231[2]|[0]73771429-73771581[2]|[0]73780424-73780498[2]|[0]73781259-73781319[0]|[1]73782614-73782755[1]|[2]73783707-73783824[2]|[0]73785364-73785477[2]|[0]73787234-73787452[2]|[0]73788468-73788612[0]|[1]73792626-73792802[0]|[1]73803220-73803301[1]|[2]73806844-73807072[2]|[0]73808083-73808248[0]|[1]73809984-73810174[2]|[0]73810992-73811147[2]|[0]73812205-73812270[2]|[0]73814981-73815123[1]|[2]73818388-73818535[2]|[0]73820461-73820563[0]|[1]73823458-73823633[2] atgttctacttccgaggctgtggccgttgggtcgcggtttccttcaccaagcagcaatttccgttggcacggttgagcagtgacagcgcggcgccccggactccgcacttcgacgtgatagtcattggtggaggacatgccgggactgaggcagccaccgccgccgctcggtgcggctctcggactctgctcctcactcaccgcgtggacacgatcggtcagatgtcatgtaatccttcctttggtggcatcggaaagggacatttaatgagggaagtagatgccttggatggcctgtgttctcgcatctgtgaccagtctggtgtacattataaagtattaaaccggcgtaagggaccagctgtgtggggtctgagagctcagattgataggaaactctataaacagaacatgcagaaagaaatcttgaatacaccactgcttactgttcaggagggagctgtagaagatcttattcttacagaaccagagcctgaacacactgggaaatgccgtgtcagtggggttgttttggtggatggaagcacagtatatgcagagagtgtgattctgactactgggacatttctgagaggcatgattgtaattggattggagacgcatccagcaggacgtttaggggatcagccttctataggattggctcagacactggagaagttagggtttgtggtgggaaggttgaagactgggactccaccccgaattgccaaagagtccattaatttcagtattctaaacaagcatataccggacaatccatccataccattcagctttaccaatgagacagtatggattaagccagaagatcagctgccatgttacttgactcacaccaaccctagagtggatgagattgtccttaagaaccttcaccttaatagtcatgttaaagaaacgacaagaggacctcgatactgtccctccattgaatcaaaagttttgcgttttccaaaccgtctacatcaggtttggttggaacctgaaggaatggattctgaccttatctacccacaggggttatctatgacgctaccagctgagttacaagagaaaatgatcacatgcatcagaggcttggagaaagctaaagtgattcagccaggctacggtgttcagtatgattacttagatccccgtcagatcaccccttccttggagactcatttggttcaacgactcttctttgctggacagatcaatggcaccactggttatgaggaagctgcagctcaaacagagtgttgctctgttgccaggctggagtgcagtgatatgatctcccagcttcaagcgatcctcctgcctcagccctccctagtagctgggactgcaggcatgcaccacaacacccagggtgtgatagccggaatcaacgccagtcttcgggtcagtcgcaagcctccctttgtggttagccgaacagaaggttacataggagtcttgattgatgacctcactactctgggcaccagtgaaccataccgcatgtttaccagccgagtagagttccgtttgtcactgcgccctgataatgctgacagccggctcacactgcgagggtataaagacgctggctgtgtgtcccaacaacgatatgaaagagcttgttggatgaagtcttctttagaagaaggcatttctgtgttgaaatctattgagtttttgagctctaaatggaaaaaattaatcccagaggcttctataagtactagtagaagtctgcctgtcagagctctcgatgttctgaagtatgaggaagttgacatggattcattagccaaggctgttccagagcccttgaagaagtatactaaatgtagagagctggctgaaagactgaaaatagaagccacttatgaatcagtgttgttccatcaactacaagaaataaagggagttcagcaagatgaagctctccaactgccaaaagacctagattatttgactatcagggatgtgtctttgtcccatgaagttcgagagaaactacattttagtcgtccacagacgGCTCTTTTAAGACACTTACTCTTCCATCACTACCTCTGAACAGTGCAGATGAGATTTATGAGCTACGTGTAACCGGACGTACCCAGGATGAGATTTTATTCTCTAATAGTACCCGCTTATCATTTGAGACCAAGAGAATATCTGTCTTCATTCAAACAGACAAGGCCTTATACAAGCCAAAGCAAGAAGTGAAGTTTCGCATTGTTACACTCTTCTCAGATTTTAAGCCTTACAAAACCTCTTTAAACATTCTCATTAAGGACCCCAAATCAAATTTGATCCAACAGTGGTTGTCACAACAAAGTGATCTTGGAGTCATTTCCAAAACTTTTCAGCTATCTTCCCATCCAATACTTGGTGACTGGTCTATTCAAGTTCAAGTGAATGACCAGACATACTATCAATCATTTCAGGTTTCAGAATATGTATTACCAAAATTTGAAGTGACTTTGCAGACACCATTATATTGTTCTATGAATTCTAAGCATTTAAATGGTACCATCACGGCAAAGTATACATATGGGAAGCCAGTGAAAGGAGACGTAACGCTTACATTTTTACCTTTATCCTTTTGGGGAAAGAAGAAAAATATTACAAAAACATTTAAGATAAATGGATCTGCAAACTTCTCTTTTAATGATGAAGAGATGAAAAATGTAATGGATTCTTCAAATGGACTTTCTGAATACCTGGATCTATCTTCCCCTGGACCAGTAGAAATTTTAACCACAGTGACAGAATCAGTTACAGGTATTTCAAGAAATGTAAGCACTAATGTGTTCTTCAAGCAACATGATTACATCATTGAGTTTTTTGATTATACTACTGTCTTGAAGCCATCTCTCAACTTCACAGCCACTGTGAAGGTAACTCGTGCTGATGGCAACCAACTGACTCTTGAAGAAAGAAGAAATAATGTAGTCATAACAGTGACACAGAGAAACTATACTGAGTACTGGAGCGGATCTAACAGTGGAAATCAGAAAATGGAAGCTGTTCAGAAAATAAATTATACTGTCCCCCAAAGTGGAACTTTTAAGATTGAATTCCCAATCCTGGAGGATTCCAGTGAGCTACAGTTGAAGGCCTATTTCCTTGGTAGTAAAAGTAGCATGGCAGTTCATAGTCTGTTTAAGTCTCCTAGTAAGACATACATCCAACTAAAAACAAGAGATGAAAATATAAAGGTGGGATCGCCTTTTGAGTTGGTGGTTAGTGGCAACAAACGATTGAAGGAGTTAAGCTATATGGTAGTATCCAGGGGACAGTTGGTGGCTGTAGGAAAACAAAATTCAACAATGTTCTCTTTAACACCAGAAAATTCTTGGACTCCAAAAGCCTGTGTAATTGTGTATTATATTGAAGATGATGGGGAAATTATAAGTGATGTTCTAAAAATTCCTGTTCAGCTTGTTTTTAAAAATAAGATAAAGCTATATTGGAGTAAAGTGAAAGCTGAACCATCTGAGAAAGTCTCTCTTAGGATCTCTGTGACACAGCCTGACTCCATAGTTGGGATTGTAGCTGTTGACAAAAGTGTGAATCTGATGAATGCCTCTAATGATATTACAATGGAAAATGTGGTCCATGAGTTGGAACTTTATAACACAGGATATTATTTAGGCATGTTCATGAATTCTTTTGCAGTCTTTCAGGAATGTGGACTCTGGGTATTGACAGATGCAAACCTCACGAAGGATTATATTGATGGTGTTTATGACAATGCAGAATATGCTGAGAGGTTTATGGAGGAAAATGAAGGACATATTGTAGATATTCATGACTTTTCTTTGGGTAGCAGTCCACATGTCCGAAAGCATTTTCCAGAGACTTGGATTTGGCTAGACACCAACATGGGTTACAGGATTTACCAAGAATTTGAAGTAACTGTACCTGATTCTATCACTTCTTGGGTGGCTACTGGTTTTGTGATCTCTGAGGACCTGGGTCTTGGACTAACAACTACTCCAGTGGAGCTCCAAGCCTTCCAACCATTTTTCATTTTTTTGAATCTTCCCTACTCTGTTATCAGAGGTGAAGAATTTGCTTTGGAAATAACTATATTCAATTATTTGAAAGATGCCACTGAGGTTAAGGTAATCATTGAGAAAAGTGACAAATTTGATATTCTAATGACTTCAAATGAAATAAATGCCACAGGCCACCAGCAGACCCTTCTGGTTCCCAGTGAGGATGGGGCAACTGTTCTTTTTCCCATCAGGCCAACACATCTGGGAGAAATTCCTATCACAGTCACAGCTCTTTCACCCACTGCTTCTGATGCTGTCACCCAGATGATTTTAGTAAAGGCTGAAGGAATAGAAAAATCATATTCACAATCCATCTTATTAGACTTGACTGACAATAGGCTACAGAGTACCCTGAAAACTTTGAGTTTCTCATTTCCTCCTAATACAGTGACTGGCAGTGAAAGAGTTCAGATCACTGCAATTGGAGATGTTCTTGGTCCTTCCATCAATGGCTTAGCCTCATTGATTCGGATGCCTTATGGCTGTGGTGAACAGAACATGATAAATTTTGCTCCAAATATTTACATTTTGGATTATCTGACTAAAAAGAAACAACTGACAGATAATTTGAAAGAAAAAGCTCTTTCATTTATGAGGCAAGGTTACCAGAGAGAACTTCTCTATCAGAGGGAAGATGGCTCTTTCAGTGCTTTTGGGAATTATGACCCTTCTGGGAGCACTTGGTTGTCAGCTTTTGTTTTAAGATGTTTCCTTGAAGCCGATCCTTACATAGATATTGATCAGAATGTGTTACACAGAACATACACTTGGCTTAAAGGACATCAGAAATCCAACGGTGAATTTTGGGATCCAGGAAGAGTGATTCATAGTGAGCTTCAAGGTGGCAATAAAAGTCCAGTAACACTTACAGCCTATATTGTAACTTCTCTCCTGGGATATAGAAAGTATCAGCCTAACATTGATGTGCAAGAGTCTATCCATTTTTTGGAGTCTGAATTCAGTAGAGGAATTTCAGACAATTATACTCTAGCCCTTATAACTTATGCATTGTCATCAGTGGGGAGTCCTAAAGCGAAGGAAGCTTTGAATATGCTGACTTGGAGAGCAGAACAAGAAGGTGGCATGCAATTCTGGGTGTCATCAGAGTCCAAACTTTCTGACTCCTGGCAGCCACGCTCCCTGGATATTGAAGTTGCAGCCTATGCACTGCTCTCACACTTCTTACAATTTCAGACTTCTGAGGGAATCCCAATTATGAGGTGGCTAAGCAGGCAAAGAAATAGCTTGGGTGGTTTTGCATCTACTCAGGATACCACTGTGGCTTTAAAGGCTCTGTCTGAATTTGCAGCCCTAATGAATACAGAAAGGACAAATATCCAAGTGACCGTGACGGGGCCTAGCTCACCAAGTCCTGTAAAGTTTCTGATTGACACACACAACCGCTTACTCCTTCAGACAGCAGAGCTTGCTGTGGTACAGCCAACGGCAGTTAATATTTCCGCAAATGGTTTTGGATTTGCTATTTGTCAGCTCAATGTTGTATATAATGTGAAGGCTTCTGGGTCTTCTAGAAGACGAAGATCTATCCAAAATCAAGAAGCCTTTGATTTAGATGTTGCTGTAAAAGAAAATAAAGATGATCTCAATCATGTGGATTTGAATGTGTGTACAAGCTTTTCGGGCCCGGGTAGGAGTGGCATGGCTCTTATGGAAGTTAACCTATTAAGTGGCTTTATGGTGCCTTCAGAAGCAATTTCTCTGAGCGAGACAGTGAAGAAAGTGGAATATGATCATGGAAAACTCAACCTCTATTTAGATTCTGTAAATGAAACCCAGTTTTGTGTTAATATTCCTGCTGTGAGAAACTTTAAAGTTTCAAATACCCAAGATGCTTCAGTGTCCATAGTGGATTACTATGAGCCAAGGAGACAGGCGGTGAGAAGTTACAACTCTGAAGTGAAGCTGTCCTCCTGTGACCTTTGCAGTGATGTCCAGGGCTGCCGTCCTTGTGAGGATGGAGCTTCAGGCTCCCATCATCACTCTTCAGTCATTTTTATTTTCTGTTTCAAGCTTCTGTACTTTATGGAACTTTGGCTGTGA MFYFRGCGRWVAVSFTKQQFPLARLSSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCGSRTLLLTHRVDTIGQMSCNPSFGGIGKGHLMREVDALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKEILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMIVIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNPSIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIVLKNLHLNSHVKETTRGPRYCPSIESKVLRFPNRLHQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQTECCSVARLECSDMISQLQAILLPQPSLVAGTAGMHHNTQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLSSKWKKLIPEASISTSRSLPVRALDVLKYEEVDMDSLAKAVPEPLKKYTKCRELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKLHFSRPQTALLRHLLFHHYL*TVQMRFMSYV*PDVPRMRFYSLIVPAYHLRPREYLSSFKQTRPYTSQSKK*SFALLHSSQILSLTKPL*TFSLRTPNQI*SNSGCHNKVILESFPKLFSYLPIQYLVTGLFKFK*MTRHTINHFRFQNMYYQNLK*LCRHHYIVL*ILSI*MVPSRQSIHMGSQ*KET*RLHFYLYPFGERRKILQKHLR*MDLQTSLLMMKR*KM*WILQMDFLNTWIYLPLDQ*KF*PQ*QNQLQVFQEM*ALMCSSSNMITSLSFLIILLS*SHLSTSQPL*R*LVLMATN*LLKKEEIM*S*Q*HRETILSTGADLTVEIRKWKLFRK*IILSPKVELLRLNSQSWRIPVSYS*RPISLVVKVAWQFIVCLSLLVRHTSN*KQEMKI*RWDRLLSWWLVATND*RS*AIW*YPGDSWWL*ENKIQQCSL*HQKILGLQKPV*LCIILKMMGKL*VMF*KFLFSLFLKIR*SYIGVK*KLNHLRKSLLGSL*HSLTP*LGL*LLTKV*I**MPLMILQWKMWSMSWNFITQDII*ACS*ILLQSFRNVDSGY*QMQTSRRIILMVFMTMQNMLRGLWRKMKDIL*IFMTFLWVAVHMSESIFQRLGFG*TPTWVTGFTKNLK*LYLILSLLGWLLVL*SLRTWVLD*QLLQWSSKPSNHFSFF*IFPTLLSEVKNLLWK*LYSII*KMPLRLR*SLRKVTNLIF**LQMK*MPQATSRPFWFPVRMGQLFFFPSGQHIWEKFLSQSQLFHPLLLMLSPR*F**RLKE*KNHIHNPSY*T*LTIGYRVP*KL*VSHFLLIQ*LAVKEFRSLQLEMFLVLPSMA*PH*FGCLMAVVNRT**ILLQIFTFWII*LKRNN*QII*KKKLFHL*GKVTRENFSIRGKMALSVLLGIMTLLGALGCQLLF*DVSLKPILT*ILIRMCYTEHTLGLKDIRNPTVNFGIQEE*FIVSFKVAIKVQ*HLQPIL*LLSWDIESISLTLMCKSLSIFWSLNSVEEFQTIIL*PL*LMHCHQWGVLKRRKL*IC*LGEQNKKVACNSGCHQSPNFLTPGSHAPWILKLQPMHCSHTSYNFRLLRESQL*GG*AGKEIAWVVLHLLRIPLWL*RLCLNLQP**IQKGQISK*P*RGLAHQVL*SF*LTHTTAYSFRQQSLLWYSQRQLIFPQMVLDLLFVSSMLYIM*RLLGLLEDEDLSKIKKPLI*MLL*KKIKMISIMWI*MCVQAFRARVGVAWLLWKLTY*VALWCLQKQFL*ARQ*RKWNMIMENSTSI*IL*MKPSFVLIFLL*ETLKFQIPKMLQCP*WITMSQGDRR*EVTTLK*SCPPVTFAVMSRAAVLVRMELQAPIITLQSFLFSVSSFCTLWNFGC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32612 SCFD2::POLR2B ENSG00000184178.17::ENSG00000047315.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2012 FALSE NA FALSE NA SCFD2 ENSG00000184178.17 protein_coding - - chr4:52872982-53366066:- chr4:53273826:- chr4:53739149-54232233:- chr4:54139993:- POLR2B ENSG00000047315.17 protein_coding + + chr4:56977722-57031158:+ chr4:56994404:+ chr4:57843888-57897324:+ chr4:57860570:+ chr4:53182687 chr4:56992512 NA NA chr4:54048854 chr4:57858678 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sec1|204-279|0.0028^Sec1|503-620|3.7e-10 RNA_pol_Rpb2_1-PARTIAL|~244-441|3.8e-75^RNA_pol_Rpb2_2-PARTIAL|~244-394|1.4e-57^RNA_pol_Rpb2_7|331-347|2.1^RNA_pol_Rpb2_3|468-532|2e-26^RNA_pol_Rpb2_2|560-597|1.4^RNA_pol_Rpb2_4|567-629|2.4e-29^RNA_pol_Rpb2_5|653-700|7.2e-21^RNA_pol_Rpb2_1|671-691|2^RNA_pol_Rpb2_6|707-1080|1.6e-145^RNA_pol_Rpb2_7|1082-1172|3e-36 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:3.61Mb] 5 3 5 3 ONLY_REF_SPLICE YES_LDAS 0.1165 GT 1.9086 AG 1.9656 ENST00000388940.8 1-1311 ENST00000381227.5 244-3525 chr4|-|[2]53273826-53274001[1]|[0]53313636-53313763[2]|[1]53352598-53352766[1]|[0]53365104-53365941[0]<==>chr4|+|[0]56994404-56994516[1]|[2]56994647-56994866[2]|[0]56995251-56995409[2]|[0]56999617-56999781[2]|[0]57005246-57005442[1]|[2]57005600-57005719[1]|[2]57006816-57007002[2]|[0]57010361-57010504[2]|[0]57010748-57010887[1]|[2]57010989-57011100[2]|[0]57015502-57015656[1]|[2]57017043-57017241[2]|[0]57017560-57017728[0]|[1]57020899-57020995[1]|[2]57022152-57022246[0]|[1]57023330-57023580[2]|[0]57023662-57023751[2]|[0]57024005-57024112[2]|[0]57024886-57024999[2]|[0]57025377-57025537[1]|[2]57030204-57030399[2]|[0]57030899-57030988[2] atgagcgcctcgggcgtactgtcctttacccagcaaggatgggagcaggtgctggccaaagtgaaacgggctgtggtttacctggacgccgcctgcgccgagagcctgcactggggctgcggatccacccgtctcctggaggcggtggggggtcctgactgtcacctgcgagagttcgagcccgacgcaattggtggtggagccaagcagcccaaggcagtgtttgtgctgagctgcctgctgaaaggccggaccgtggagatcctacgggacatcatctgccgcagtcacttccagtattgtgtggtggtcacaaccgtgagccacgctgtccacctcacagctaatcatgtcccagcggcggcagcggccgagatggaggggcagcagccggtgttcgagcagctggaggagaagctgtgtgaatggatgggcaacatgaactacacggccgaggtgttccatgtcccgttattgcttgcccctgttgctccccactttgccttgactccagcttttgcatcccttttcccactgctaccccaggatgtgcacctccttaatagcgcccgaccggacaagaggaagctgggaagcctgggtgatgtggactccactacgctaaccccagagctgctgctgcagatcagatgcctagtgtcaggcctcagttctctgtgtgaacatttaggagtacgggaggagtgttttgctgtaggttccttaagtcaggtcatcgctgcggatctggccaattatgcccctgcaaagaacaggaagaagactgctgcaggcagggcatcagtggtttttgtggacagaaccctggatctcacaggagcagttggacatcatggagacaacttagtagagaagatcatttcagcacttccccagctcccaggccacacaaatgatgtgatggttaacatgatagcgctcactgcactccatactgaggaggaaaattataatgtggttgcaccaggctgtctttcacaatccagtgacaccacagccaaagccctatgggaagctttactgaacactaagcacaaagaggcagtgatggaagttcggagacatctagtggaagcggcaagcagagaaaacctgccaatcaagatgagtatggggagagtcacaccgggacagctcatgtcctatattcagctcttcaagaacaacctcaaagctctaatgaatcattgtggcctcctccagcttggactggccacagctcaaacgttgaaacacccacagactgccaagtgggacaactttctggcttttgaaaggctccttcttcagCCACGATATTTGCTGAAGTTTGAACAAATTTATCTTTCCAAGCCTACCCATTGGGAAAGAGATGGTGCTCCTTCACCAATGATGCCCAATGAAGCTAGATTAAGGAATCTCACGTATTCTGCTCCGCTTTATGTTGATATAACAAAAACAGTCATTAAAGAAGGTGAAGAACAACTTCAGACTCAGCATCAGAAAACTTTTATAGGAAAAATTCCAATTATGTTGCGGTCAACTTACTGCCTTTTGAATGGCTTGACAGATCGTGATCTTTGTGAGTTAAATGAATGCCCTTTGGATCCTGGTGGCTATTTCATTATTAATGGATCAGAAAAGGTTCTGATTGCCCAAGAGAAAATGGCAACAAACACAGTTTATGTGTTTGCCAAAAAGGATTCTAAATATGCCTACACAGGAGAGTGTAGATCATGTCTTGAGAATTCTTCCCGACCCACCAGTACTATATGGGTTAGCATGCTGGCAAGAGGAGGACAGGGTGCCAAGAAGAGTGCTATTGGTCAGCGCATTGTGGCAACTCTACCATATATCAAGCAAGAAGTTCCCATCATTATTGTGTTCAGAGCATTAGGTTTTGTGTCCGACAGAGATATTTTAGAACATATTATTTATGATTTTGAAGATCCAGAGATGATGGAAATGGTTAAACCTTCTCTCGATGAAGCTTTTGTCATCCAAGAACAGAATGTTGCACTAAATTTCATTGGTTCAAGAGGAGCAAAGCCTGGTGTTACTAAAGAGAAAAGAATTAAATATGCAAAGGAAGTTTTACAAAAAGAAATGCTCCCTCATGTTGGTGTCAGTGATTTTTGTGAGACCAAAAAAGCCTATTTCTTGGGATACATGGTTCATAGGTTACTTCTGGCAGCTTTGGGTAGAAGAGAACTAGATGACAGAGATCACTATGGAAACAAGAGATTGGATCTTGCTGGGCCGCTGCTTGCATTCTTATTTAGAGGTATGTTTAAGAATTTGCTTAAAGAAGTGCGGATCTATGCACAGAAATTTATTGATCGAGGAAAGGATTTTAACTTGGAGTTGGCAATTAAAACACGGATCATATCTGATGGCCTAAAATACTCTTTAGCTACTGGAAACTGGGGTGATCAAAAGAAAGCTCATCAAGCCAGAGCTGGAGTATCTCAGGTGTTAAACCGCCTGACTTTTGCGTCTACTCTTTCTCACCTGCGTCGTTTAAATTCTCCTATTGGTAGAGACGGCAAGCTAGCAAAACCAAGACAGTTGCATAATACGTTGTGGGGAATGGTGTGTCCTGCCGAGACCCCAGAGGGCCATGCTGTAGGACTTGTGAAGAATTTAGCCTTGATGGCGTATATTTCAGTTGGATCTCAACCATCTCCAATTCTGGAATTTTTAGAAGAATGGAGTATGGAAAATTTAGAAGAAATTTCTCCTGCAGCTATTGCTGATGCAACCAAGATTTTTGTTAATGGCTGCTGGGTTGGAATACATAAAGATCCCGAACAACTTATGAACACCCTAAGGAAATTGAGACGTCAGATGGACATCATTGTGTCTGAAGTTTCTATGATCAGAGATATTCGAGAGAGGGAGATTCGGATCTATACGGATGCAGGCCGTATTTGTAGACCACTTCTGATTGTGGAAAAACAAAAGCTACTTTTGAAGAAGAGGCATATTGACCAATTGAAAGAGAGAGAATATAACAACTATAGTTGGCAGGATCTTGTGGCCAGTGGGGTAGTGGAGTATATTGATACCCTGGAAGAAGAAACAGTGATGCTTGCAATGACTCCAGATGATTTACAGGAGAAAGAAGTAGCTTATTGTTCCACATATACACACTGTGAGATTCATCCCTCAATGATCCTTGGTGTCTGTGCATCTATTATTCCCTTTCCTGATCATAACCAGTCCCCTAGAAACACATACCAGTCTGCTATGGGTAAGCAGGCTATGGGAGTTTACATCACCAACTTCCATGTTCGCATGGACACATTGGCCCATGTTCTCTATTATCCTCAAAAGCCACTTGTGACTACACGGTCTATGGAATATCTACGATTTAGAGAGCTGCCAGCAGGCATCAACTCAATTGTGGCCATTGCATCATACACTGGATATAATCAGGAAGACTCTGTTATCATGAATCGTTCAGCTGTAGACCGCGGCTTCTTCAGGTCTGTTTTCTATCGCTCATACAAAGAACAGGAGTCTAAAAAAGGATTTGATCAAGAAGAAGTTTTTGAGAAGCCTACACGTGAAACATGCCAGGGCATGAGGCATGCCATTTACGACAAGCTGGATGATGATGGTTTGATAGCTCCAGGGGTTCGTGTATCAGGAGATGATGTTATTATAGGCAAAACAGTCACCTTGCCTGAAAATGAAGATGAATTGGAGAGCACCAATAGACGCTATACCAAGAGAGACTGTAGCACTTTTCTCAGAACTAGCGAGACGGGCATTGTGGATCAGGTTATGGTAACTCTCAATCAGGAAGGATATAAATTTTGTAAAATAAGGGTACGCTCTGTTAGGATTCCACAGATTGGAGACAAATTTGCTAGTCGACATGGTCAAAAGGGTACTTGTGGTATTCAGTATAGACAAGAGGATATGCCTTTCACCTGTGAAGGTATCACCCCTGATATCATCATCAATCCCCATGCCATCCCCTCTCGTATGACTATTGGTCACTTAATTGAATGCCTTCAAGGGAAGGTATCGGCTAACAAGGGTGAAATTGGTGATGCCACTCCATTTAATGATGCTGTTAACGTGCAGAAGATTTCTAATCTTTTATCTGATTATGGCTATCATCTCAGAGGAAATGAGGTCCTGTACAATGGGTTCACTGGTCGAAAAATCACATCACAAATATTTATTGGCCCCACTTATTACCAGCGTTTGAAGCATATGGTGGATGATAAGATTCACTCTCGTGCTAGGGGACCTATTCAGATCCTCAATAGACAGCCCATGGAGGGTAGATCTCGTGATGGTGGCCTGCGTTTTGGAGAAATGGAACGAGATTGTCAGATTGCCCATGGAGCAGCCCAGTTTTTAAGGGAAAGATTGTTTGAGGCATCAGATCCATATCAGGTTCATGTTTGCAATCTTTGTGGAATAATGGCGATTGCCAACACCAGGACCCATACATATGAATGCAGGGGCTGCCGCAATAAAACCCAGATTTCTTTGGTGCGAATGCCTTACGCATGCAAACTATTGTTTCAGGAACTTATGTCTATGAGTATTGCACCGCGAATGATGAGTGTTTAG MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFEPDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQDVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVGSLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQLPGHTNDVMVNMIALTALHTEEENYNVVAPGCLSQSSDTTAKALWEALLNTKHKEAVMEVRRHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32617 ZMYND8::SULF2 ENSG00000101040.20::ENSG00000196562.16 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 3696 TRUE 1397 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47287229:- chr20:45837859-45985633:- chr20:45915973:- SULF2 ENSG00000196562.16 protein_coding - - chr20:47656197-47786616:- chr20:47706903:- chr20:46284941-46415360:- chr20:46335647:- chr20:47285990,chr20:47285933 chr20:47713643,chr20:47713727 NA NA chr20:45914734,chr20:45914677 chr20:46342387,chr20:46342471 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ZMYND8:Oncogene"];["SULF2:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.30Mb] 5 39 5 19.87 ONLY_REF_SPLICE YES_LDAS 0.362 GT 1.9329 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Breast no_match TRUE Ovarian serous cystadenocarcinoma,Uterine Corpus Endometrial Carcinoma OVARY,UTERUS no_match 45976600,45976600 FALSE,FALSE 46319039,46331414 FALSE,FALSE PARTIALLY,YES Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32619 MBOAT2::KIDINS220 ENSG00000143797.12::ENSG00000134313.17 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2020 FALSE NA FALSE NA MBOAT2 ENSG00000143797.12 protein_coding - - chr2:8852690-9003709:- chr2:8943187:- chr2:8992820-9143838:- chr2:9083316:- KIDINS220 ENSG00000134313.17 protein_coding - - chr2:8721081-8837630:- chr2:8791224:- chr2:8861211-8977760:- chr2:8931354:- chr2:8925114 chr2:8792106 NA NA chr2:9065244 chr2:8932236 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MBOAT|49-101|0.003^MBOAT-PARTIAL|118-299~|3.9e-37 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.02Mb];NEIGHBORS[15060] 4 4 4 4 ONLY_REF_SPLICE YES_LDAS 0.1164 GT 1.7465 AG 1.9086 ENST00000305997.8 1-299 ENST00000256707.8 1277-5316 chr2|-|[1]8943187-8943264[2]|[1]8958497-8958642[0]|[2]9003540-9003614[0]<==>chr2|-|[2]8730720-8731982[0]|[2]8733444-8733680[0]|[2]8734655-8734753[0]|[2]8736868-8736999[0]|[2]8747145-8747201[0]|[2]8747887-8748000[0]|[2]8750112-8750335[1]|[0]8751466-8751644[2]|[1]8770670-8770832[1]|[0]8776748-8776892[0]|[2]8778639-8778727[1]|[0]8778896-8779139[0]|[2]8779674-8779814[0]|[2]8785741-8786030[1]|[0]8786206-8786357[2]|[1]8788647-8788812[1]|[0]8789880-8790059[1]|[0]8791060-8791224[1] atggccaccaccagcaccacgggctccaccctgctgcagcccctcagcaacgccgtgcagctgcccatcgaccaggtcaactttgtagtgtgccaactctttgccttgctagcagccatttggtttcgaacttatctacattcaagcaaaactagctcttttataagacatgtagttgctacccttttgggcctttatcttgcacttttttgctttggatggtatgccttacactttcttgtacaaagtggaatttcctactgtatcatgatcatcataggagtggagaacatgcacaaGACACTTGTCTCCTACTGAAACAGACGGTGACATGCTTGGATATGATTTATATAGCAGTGCCCTGGCAGATATTCTCAGTGAGCCTACCATGCAGCCACCCATTTGTGTGGGGTTATATGCACAGTGGGGAAGTGGGAAATCTTTCTTACTCAAGAAACTAGAAGACGAAATGAAAACCTTCGCCGGACAACAGATTGAGCCTCTCTTTCAGTTCTCATGGCTCATAGTGTTTCTTACCCTGCTACTTTGTGGAGGGCTTGGTTTATTGTTTGCCTTCACGGTCCACCCAAATCTTGGAATAGCAGTGTCACTGAGCTTCTTGGCTCTCTTATATATATTCTTTATTGTCATTTACTTTGGTGGACGAAGAGAAGGAGAGAGTTGGAATTGGGCCTGGGTCCTCAGCACTAGATTGGCAAGACATATTGGATATTTGGAACTCCTCCTTAAATTGATGTTTGTGAATCCACCTGAGTTGCCAGAGCAGACTACTAAAGCTTTACCTGTGAGGTTTTTGTTTACAGATTACAATAGACTGTCCAGTGTAGGTGGAGAAACTTCTCTGGCTGAAATGATTGCAACCCTCTCGGATGCTTGTGAAAGAGAGTTTGGCTTTTTGGCAACCAGGCTTTTTCGAGTATTCAAGACTGAAGATACTCAGGGTAAAAAGAAATGGAAAAAAACATGTTGTCTCCCATCTTTTGTCATCTTCCTTTTTATCATTGGCTGCATTATATCTGGAATTACTCTTCTGGCTATATTTAGAGTTGACCCAAAGCATCTGACTGTAAATGCTGTCCTCATATCAATCGCATCTGTAGTGGGATTGGCCTTTGTGTTGAACTGTCGTACATGGTGGCAAGTGCTGGACTCGCTCCTGAATTCCCAAAGAAAACGCCTCCATAATGCAGCCTCCAAACTGCACAAATTGAAAAGTGAAGGATTCATGAAAGTTCTTAAATGTGAAGTGGAATTGATGGCCAGGATGGCAAAAACCATTGACAGCTTCACTCAGAATCAGACAAGGCTGGTGGTCATCATCGATGGATTAGATGCCTGTGAGCAGGACAAAGTCCTTCAGATGCTGGACACTGTCCGAGTTCTGTTTTCAAAAGGCCCGTTCATTGCCATTTTTGCAAGTGATCCACATATTATCATAAAGGCAATTAACCAGAACCTCAATAGTGTGCTTCGGGATTCAAATATAAATGGCCATGACTACATGCGCAACATAGTCCACTTGCCTGTGTTCCTTAATAGTCGTGGACTAAGCAATGCAAGAAAATTTCTCGTAACTTCAGCAACAAATGGAGACGTTCCATGCTCAGATACTACAGGGATACAGGAAGATGCTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAACTTGGTAGCAAGACAGCCCTCAATAGACGGGACACTTACCGAAGAAGGCAGATGCAGAGGACCATCACTCGCCAGATGTCCTTTGATCTTACAAAACTGCTGGTTACCGAGGACTGGTTCAGTGACATCAGTCCCCAGACCATGAGAAGATTACTTAATATTGTTTCTGTGACAGGACGATTACTGAGAGCCAATCAGATTAGTTTCAACTGGGACAGGCTTGCTAGCTGGATCAACCTTACTGAGCAGTGGCCATACCGGACTTCATGGCTCATATTATATTTGGAAGAGACTGAAGGTATTCCAGATCAAATGACATTAAAAACCATCTACGAAAGAATATCAAAGAATATTCCAACAACTAAGGATGTTGAGCCACTTCTTGAAATTGATGGAGATATAAGAAATTTTGAAGTGTTTTTGTCTTCAAGGACCCCAGTTCTTGTGGCTCGAGATGTAAAAGTCTTTTTGCCATGCACTGTAAACCTAGATCCCAAACTACGGGAAATTATTGCAGATGTTCGTGCTGCCAGAGAGCAGATCAGTATTGGAGGACTGGCGTACCCCCCGCTCCCTCTACATGAGGGTCCTCCTAGGGCGCCATCAGGGTACAGCCAGCCCCCATCCGTGTGCTCTTCCACGTCCTTCAATGGGCCCTTCGCAGGTGGAGTGGTGTCACCACAGCCTCACAGCAGCTATTACAGCGGCATGACGGGCCCTCAGCATCCCTTCTACAACAGGCCATTCTTTGCCCCATACCTTTACACGCCAAGGTATTACCCTGGCGGCTCCCAACATCTCATCTCACGTCCATCAGTAAAAACGAGTTTGCCCAGAGATCAGAACAATGGCCTAGAAGTTATCAAGGAGGATGCTGCTGAGGGGCTTTCTTCACCCACAGACTCCTCGAGGGGGTCAGGCCCAGCCCCAGGCCCAGTGGTATTACTGAATTCACTGAATGTGGATGCAGTATGTGAGAAGCTGAAACAAATAGAAGGGCTGGACCAGAGTATGCTGCCTCAGTATTGTACCACGATCAAAAAGGCAAACATAAATGGCCGTGTGTTAGCTCAGTGTAACATTGATGAGCTGAAGAAAGAGATGAATATGAATTTTGGAGACTGGCACCTTTTCAGAAGCACAGTACTAGAAATGAGAAACGCAGAAAGCCACGTGGTCCCTGAAGACCCACGTTTCCTCAGTGAGAGCAGCAGTGGCCCAGCCCCGCACGGTGAGCCTGCTCGCCGCGCTTCCCACAACGAGCTGCCTCACACCGAGCTCTCCAGCCAGACGCCCTACACACTCAACTTCAGCTTCGAAGAGCTGAACACGCTTGGCCTGGATGAAGGTGCCCCTCGTCACAGTAATCTAAGTTGGCAGTCACAAACTCGCAGAACCCCAAGTCTTTCGAGTCTCAATTCCCAGGATTCCAGTATTGAAATTTCAAAGCTTACTGATAAGGTGCAGGCCGAGTATAGAGATGCCTATAGAGAATACATTGCTCAGATGTCCCAGTTAGAAGGGGGCCCCGGGTCTACAACCATTAGTGGCAGATCTTCTCCACATAGCACATATTACATGGGTCAGAGTTCATCAGGGGGCTCTATTCATTCAAACCTAGAGCAAGAAAAGGGGAAGGATAGTGAACCAAAGCCCGATGATGGGAGGAAGTCCTTTCTAATGAAGAGGGGAGATGTTATCGATTATTCATCATCAGGGGTTTCCACCAACGATGCTTCCCCCCTGGATCCTATCACTGAAGAAGATGAAAAATCAGATCAGTCAGGCAGTAAGCTTCTCCCAGGCAAGAAATCTTCCGAAAGGTCAAGCCTCTTCCAGACAGATTTGAAGCTTAAGGGAAGTGGGCTGCGCTATCAAAAACTCCCAAGTGACGAGGATGAATCTGGCACAGAAGAATCAGATAACACTCCACTGCTCAAAGATGACAAAGACAGAAAAGCCGAAGGGAAAGTAGAGAGAGTGCCGAAGTCTCCAGAACACAGTGCTGAGCCGATCAGAACCTTCATTAAAGCCAAAGAGTATTTATCGGATGCGCTCCTTGACAAAAAGGATTCATCGGATTCAGGAGTGAGATCCAGTGAAAGTTCTCCCAATCACTCTCTGCACAATGAAGTGGCGGATGACTCCCAGCTTGAAAAGGCAAATCTCATAGAGCTGGAAGATGACAGTCACAGCGGAAAGCGGGGAATCCCACATAGCCTGAGTGGCCTGCAAGATCCAATTATAGCTCGGATGTCCATTTGTTCAGAAGACAAGAAAAGCCCTTCCGAATGCAGCTTGATAGCCAGCAGCCCTGAAGAAAACTGGCCTGCATGCCAGAAAGCCTACAACCTGAACCGAACTCCCAGCACCGTGACTCTGAACAACAATAGTGCTCCAGCCAACAGAGCCAATCAAAATTTCGATGAGATGGAGGGAATTAGGGAGACTTCTCAAGTCATTTTGAGGCCTAGTTCCAGTCCCAACCCAACCACTATTCAGAATGAGAATCTAAAAAGCATGACACATAAGCGAAGCCAACGTTCAAGTTACACAAGGCTCTCCAAAGATCCTCCGGAGCTCCATGCAGCAGCCTCTTCTGAGAGCACAGGCTTTGGAGAAGAAAGAGAAAGCATTCTTTGA MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSFIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMIIIGVENMHKTLVSY*NRR*HAWI*FI*QCPGRYSQ*AYHAATHLCGVICTVGKWEIFLTQETRRRNENLRRTTD*ASLSVLMAHSVSYPATLWRAWFIVCLHGPPKSWNSSVTELLGSLIYILYCHLLWWTKRRRELELGLGPQH*IGKTYWIFGTPP*IDVCEST*VARADY*SFTCEVFVYRLQ*TVQCRWRNFSG*NDCNPLGCL*KRVWLFGNQAFSSIQD*RYSG*KEMEKNMLSPIFCHLPFYHWLHYIWNYSSGYI*S*PKASDCKCCPHINRICSGIGLCVELSYMVASAGLAPEFPKKTPP*CSLQTAQIEK*RIHESS*M*SGIDGQDGKNH*QLHSESDKAGGHHRWIRCL*AGQSPSDAGHCPSSVFKRPVHCHFCK*STYYHKGN*PEPQ*CASGFKYKWP*LHAQHSPLACVP**SWTKQCKKISRNFSNKWRRSMLRYYRDTGRC*QKSFTEQPWGDDKTW*QDSPQ*TGHLPKKADAEDHHSPDVL*SYKTAGYRGLVQ*HQSPDHEKIT*YCFCDRTITESQSD*FQLGQAC*LDQPY*AVAIPDFMAHIIFGRD*RYSRSNDIKNHLRKNIKEYSNN*GC*ATS*N*WRYKKF*SVFVFKDPSSCGSRCKSLFAMHCKPRSQTTGNYCRCSCCQRADQYWRTGVPPAPST*GSS*GAIRVQPAPIRVLFHVLQWALRRWSGVTTASQQLLQRHDGPSASLLQQAILCPIPLHAKVLPWRLPTSHLTSISKNEFAQRSEQWPRSYQGGCC*GAFFTHRLLEGVRPSPRPSGITEFTECGCSM*EAETNRRAGPEYAASVLYHDQKGKHKWPCVSSV*H**AEERDEYEFWRLAPFQKHSTRNEKRRKPRGP*RPTFPQ*EQQWPSPAR*ACSPRFPQRAASHRALQPDALHTQLQLRRAEHAWPG*RCPSSQ*SKLAVTNSQNPKSFESQFPGFQY*NFKAY**GAGRV*RCL*RIHCSDVPVRRGPRVYNH*WQIFST*HILHGSEFIRGLYSFKPRARKGEG**TKAR*WEEVLSNEEGRCYRLFIIRGFHQRCFPPGSYH*RR*KIRSVRQ*ASPRQEIFRKVKPLPDRFEA*GKWAALSKTPK*RG*IWHRRIR*HSTAQR*QRQKSRRESRESAEVSRTQC*ADQNLH*SQRVFIGCAP*QKGFIGFRSEIQ*KFSQSLSAQ*SGG*LPA*KGKSHRAGR*QSQRKAGNPT*PEWPARSNYSSDVHLFRRQEKPFRMQLDSQQP*RKLACMPESLQPEPNSQHRDSEQQ*CSSQQSQSKFR*DGGN*GDFSSHFEA*FQSQPNHYSE*ESKKHDT*AKPTFKLHKALQRSSGAPCSSLF*EHRLWRRKRKHSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32621 UVRAG::DGAT2 ENSG00000198382.9::ENSG00000062282.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2011 FALSE NA FALSE NA UVRAG ENSG00000198382.9 protein_coding + + chr11:75815210-76144232:+ chr11:75861780:+ chr11:75526255-75855276:+ chr11:75572825:+ DGAT2 ENSG00000062282.15 protein_coding + + chr11:75759512-75801535:+ chr11:75784618:+ chr11:75470557-75512580:+ chr11:75495663:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame VPS38-PARTIAL|39-270~|1.2e-10^C2|46-108|3.8e-08^ATG14-PARTIAL|185-270~|1.4e-17 DAGAT-PARTIAL|~122-388|3.7e-152^Acyltransferase|198-277|2.4e-06 ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];LOCAL_REARRANGEMENT:+:[13632] 4 6 4 5.9 ONLY_REF_SPLICE YES_LDAS 0.1441 GT 1.8323 AG 1.9329 ENST00000356136.8 1-270 ENST00000228027.12 122-1167 chr11|+|[0]75815408-75815524[2]|[0]75851883-75852000[0]|[1]75861746-75861780[2]<==>chr11|+|[1]75784618-75784746[0]|[1]75790188-75790295[0]|[1]75790661-75790731[2]|[0]75796328-75796532[0]|[1]75797158-75797332[1]|[2]75798227-75798429[0]|[1]75800354-75800508[2] atgagcgcctccgcgtcggtcgggggccccgtcccccagccacccccgggcccggccgctgctctgcctcccggttctgccgcgcgggccctgcatgtggagctgccgtctcagcagcggcgtcttcgacatcttcggaacattgctgcccggaacattgttaatagaaatggccatcagctccttgatacctactttacacttcacttgtgtagtactgaaaagatatataaagaattttatagaagtgaagtgattaagaattccttgGCACTGGATCCAGCATCCTCTCCGCCCTCCAGGACCTCTTCTCTGTCACCTGGCTCAATAGGTCCAAGGTGGAAAAGCAGCTACAGGTCATCTCAGTGCTCCAGTGGGTCCTGTCCTTCCTTGTACTGGGAGTGGCCTGCAGTGCCATCCTCATGTACATATTCTGCACTGATTGCTGGCTCATCGCTGTGCTCTACTTCACTTGGCTGGTGTTTGACTGGAACACACCCAAGAAAGGTGGCAGGAGGTCACAGTGGGTCCGAAACTGGGCTGTGTGGCGCTACTTTCGAGACTACTTTCCCATCCAGCTGGTGAAGACACACAACCTGCTGACCACCAGGAACTATATCTTTGGATACCACCCCCATGGTATCATGGGCCTGGGTGCCTTCTGCAACTTCAGCACAGAGGCCACAGAAGTGAGCAAGAAGTTCCCAGGCATACGGCCTTACCTGGCTACACTGGCAGGCAACTTCCGAATGCCTGTGTTGAGGGAGTACCTGATGTCTGGAGGTATCTGCCCTGTCAGCCGGGACACCATAGACTATTTGCTTTCAAAGAATGGGAGTGGCAATGCTATCATCATCGTGGTCGGGGGTGCGGCTGAGTCTCTGAGCTCCATGCCTGGCAAGAATGCAGTCACCCTGCGGAACCGCAAGGGCTTTGTGAAACTGGCCCTGCGTCATGGAGCTGACCTGGTTCCCATCTACTCCTTTGGAGAGAATGAAGTGTACAAGCAGGTGATCTTCGAGGAGGGCTCCTGGGGCCGATGGGTCCAGAAGAAGTTCCAGAAATACATTGGTTTCGCCCCATGCATCTTCCATGGTCGAGGCCTCTTCTCCTCCGACACCTGGGGGCTGGTGCCCTACTCCAAGCCCATCACCACTGTTGTGGGAGAGCCCATCACCATCCCCAAGCTGGAGCACCCAACCCAGCAAGACATCGACCTGTACCACACCATGTACATGGAGGCCCTGGTGAAGCTCTTCGACAAGCACAAGACCAAGTTCGGCCTCCCGGAGACTGAGGTCCTGGAGGTGAACTGA MSASASVGGPVPQPPPGPAAALPPGSAARALHVELPSQQRRLRHLRNIAARNIVNRNGHQLLDTYFTLHLCSTEKIYKEFYRSEVIKNSLALDPASSPPSRTSSLSPGSIGPRWKSSYRSSQCSSGSCPSLYWEWPAVPSSCTYSALIAGSSLCSTSLGWCLTGTHPRKVAGGHSGSETGLCGATFETTFPSSW*RHTTC*PPGTISLDTTPMVSWAWVPSATSAQRPQK*ARSSQAYGLTWLHWQATSECLC*GST*CLEVSALSAGTP*TICFQRMGVAMLSSSWSGVRLSL*APCLARMQSPCGTARAL*NWPCVMELTWFPSTPLERMKCTSR*SSRRAPGADGSRRSSRNTLVSPHASSMVEASSPPTPGGWCPTPSPSPLLWESPSPSPSWSTQPSKTSTCTTPCTWRPW*SSSTSTRPSSASRRLRSWR*T FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 75526569 FALSE 75507373 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32625 MTO1::CD109 ENSG00000135297.17::ENSG00000156535.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 3712 TRUE 1409 MTO1 ENSG00000135297.17 protein_coding + + chr6:73461578-73509236:+ chr6:73497896:+ chr6:74171301-74218959:+ chr6:74207619:+ CD109 ENSG00000156535.15 protein_coding + + chr6:73695785-73828316:+ chr6:73722289:+ chr6:74405508-74538040:+ chr6:74432012:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CD109:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.19Mb] 3 7 3 4.27 INCL_NON_REF_SPLICE YES_LDAS 0.1058 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32627 NTN4::CDK17 ENSG00000074527.13::ENSG00000059758.8 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2010 FALSE NA FALSE NA NTN4 ENSG00000074527.13 protein_coding - - chr12:95657807-95791189:- chr12:95682707:- chr12:96051583-96184967:- chr12:96076483:- CDK17 ENSG00000059758.8 protein_coding - - chr12:96278261-96400480:- chr12:96300360:- chr12:96672039-96794258:- chr12:96694138:- chr12:95674638,chr12:95674643 chr12:96303185,chr12:96303187 NA NA chr12:96068414,chr12:96068419 chr12:96696963,chr12:96696965 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Laminin_N|34-260|1.3e-78^Laminin_EGF|75-85|0.22^F5_F8_type_C|103-159|1.2e-05^BNR_6|146-155|3.6e-05^NTR|225-239|0.3^Laminin_EGF|233-239|5^Laminin_EGF|262-318|3.4e-10^Laminin_N|305-335|5^Laminin_EGF|332-383|8.4e-12^Laminin_EGF|395-446|4.3e-14^Laminin_EGF|449-462|1.6^Laminin_EGF|502-516|0.0027^NTR|518-620|3.6e-26 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.49Mb] 3 5 3 5 ONLY_REF_SPLICE YES_LDAS 0.1165 GT 1.8062 AG 1.8892 ENST00000343702.9 1-1510 ENST00000261211.8 544-1572 chr12|-|[0]95682707-95682822[2]|[1]95683498-95683711[1]|[0]95710441-95710629[1]|[0]95713212-95713338[0]|[2]95737866-95738144[0]|[2]95786939-95787468[1]|[0]95790255-95790309[0]<==>chr12|-|[2]96280242-96280279[1]|[0]96280808-96280885[1]|[0]96282509-96282599[0]|[2]96283603-96283645[2]|[1]96286043-96286148[1]|[0]96286664-96286761[2]|[1]96289167-96289287[1]|[0]96294999-96295122[0]|[2]96297270-96297332[0]|[2]96297627-96297721[1]|[0]96298869-96298983[0]|[2]96300304-96300360[0] atggggagctgcgcgcggctgctgctgctctggggctgcacggtggtggccgcaggactgagtggagtagctggagtgagttcccgctgtgaaaaagcctgcaaccctcggatgggaaatttggctttggggcgaaaactctgggcagacaccacctgcggtcagaatgctaccgaactgtactgcttctacagtgagaacacggatctgacttgtcggcagcccaaatgtgacaagtgcaatgctgcctatcctcacctggctcacctgccatctgccatggcagactcatccttccggtttcctcgcacatggtggcagtctgcggaggatgtgcacagagaaaagatccagttagacctggaagctgaattctacttcactcacctaattgtgatgttcaagtcccccaggccggctgccatggtgctggaccgctcccaggactttgggaaaacatggaagccttataagtactttgcgactaactgctccgctacatttggcctggaagatgatgttgtcaagaagggcgctatttgtacttctaaatactccagtccttttccatgcactggaggagaggttattttcaaagctttgtcaccaccatacgatacagagaacccttacagtgccaaagttcaggagcagctgaagatcaccaaccttcgcgtgcagctgctgaaacgacagtcttgtccctgtcagagaaatgacctgaacgaagagcctcaacattttacacactatgcaatctatgatttcattgtcaagggcagctgcttctgcaatggccacgctgatcaatgcatacctgttcatggcttcagacctgtcaaggccccaggaacattccacatggtccatgggaagtgtatgtgtaagcacaacacagcaggcagccactgccagcactgtgccccgttatacaatgaccggccatgggaggcagctgatggcaaaacgggggctcccaacgagtgcagaacctgcaagtgtaatgggcatgctgatacctgtcacttcgacgttaatgtgtgggaggcatcagggaatcgtagtggtggtgtctgtgatgactgtcagcacaacacagaaggacagtattgccagaggtgcaagccaggcttctatcgtgacctgcggagacccttctcagctccagatgcttgcaaaccgtgttcctgccatccagtaggatcagctgtccttcctgccaactcagtgaccttctgcgaccccagcaatggtgactgcccttgcaagcctggggtggcagggcgacgttgtgacaggtgcatggtgggatactggggcttcggagactatggctgtcgaccatgtgactgtgcggggagctgtgaccctatcaccggagactgcatcagcagccacacagacatagactggtatcatgaagttcctgacttccgtcccgtgcacaataagagcgaaccagcctgggagtgggaggatgcgcaggggttttctgcacttctacactcagTCAGAAATTGGCTTTGGAAAAATGGAAACCTACATCAAATTGGAAAAGCTTGGAGAGGGTACATATGCAACAGTATATAAAGGAAGAAGTAAATTGACAGAGAATTTGGTGGCATTAAAAGAGATCCGATTGGAACATGAAGAAGGTGCACCCTGCACAGCTATAAGAGAAGTTTCACTATTAAAGGATTTAAAACATGCAAATATAGTAACCTTACATGACATTGTTCACACAGATAAATCCTTGACTTTGGTGTTTGAGTATCTGGATAAAGACCTGAAACAGTACATGGATGACTGTGGAAACATCATGAGTATGCACAACGTAAAGCTGTTTCTGTACCAAATTCTACGTGGTTTGGCATATTGCCATAGAAGAAAGGTATTGCATCGAGACTTGAAACCACAGAACCTCCTCATTAATGAGAAAGGAGAATTAAAGCTAGCAGATTTTGGACTAGCCCGAGCCAAGTCAGTTCCCACAAAGACCTACTCAAATGAAGTTGTCACACTATGGTACCGGCCACCTGATGTGCTTCTTGGTTCCTCGGAGTACTCAACACAGATTGACATGTGGGGTGTTGGTTGCATTTTCTTTGAAATGGCTTCTGGAAGACCTTTATTTCCAGGATCAACCGTGGAAGATGAACTGCACTTAATTTTCCGACTGCTAGGAACTCCATCTCAGGAAACTTGGCCAGGTATTTCTTCAAATGAGGAGTTCAAGAACTACAACTTTCCAAAATATAAACCACAGCCTCTAATTAACCACGCACCCAGGTTAGACTCTGAAGGAATTGAGTTGATAACAAAATTTCTTCAGTATGAATCTAAGAAAAGGGTTTCAGCTGAAGAGGCCATGAAACATGTGTACTTTCGAAGTCTGGGACCAAGAATACATGCTTTACCAGAAAGTGTATCAATATTCAGTTTGAAAGAGATTCAGTTGCAAAAGGACCCGGGTTTTCGAAATTCTTCTTATCCAGAGACAGGACATGGGAAGAACAGAAGACAGAGCATGCTCTTTTAA MGSCARLLLLWGCTVVAAGLSGVAGVSSRCEKACNPRMGNLALGRKLWADTTCGQNATELYCFYSENTDLTCRQPKCDKCNAAYPHLAHLPSAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIVMFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCSATFGLEDDVVKKGAICTSKYSSPFPCTGGEVIFKALSPPYDTENPYSAKVQEQLKITNLRVQLLKRQSCPCQRNDLNEEPQHFTHYAIYDFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHMVHGKCMCKHNTAGSHCQHCAPLYNDRPWEAADGKTGAPNECRTCKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFSAPDACKPCSCHPVGSAVLPANSVTFCDPSNGDCPCKPGVAGRRCDRCMVGYWGFGDYGCRPCDCAGSCDPITGDCISSHTDIDWYHEVPDFRPVHNKSEPAWEWEDAQGFSALLHSVRNWLWKNGNLHQIGKAWRGYICNSI*RKK*IDREFGGIKRDPIGT*RRCTLHSYKRSFTIKGFKTCKYSNLT*HCSHR*ILDFGV*VSG*RPETVHG*LWKHHEYAQRKAVSVPNSTWFGILP*KKGIASRLETTEPPH**ERRIKASRFWTSPSQVSSHKDLLK*SCHTMVPAT*CASWFLGVLNTD*HVGCWLHFL*NGFWKTFISRINRGR*TALNFPTARNSISGNLARYFFK*GVQELQLSKI*TTASN*PRTQVRL*RN*VDNKISSV*I*EKGFS*RGHETCVLSKSGTKNTCFTRKCINIQFERDSVAKGPGFSKFFLSRDRTWEEQKTEHALL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Cyclin-dependent kinase 17 CMGC CDK PCTAIRE Q00537 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32628 CUL5::DNAL1 ENSG00000166266.14::ENSG00000119661.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CUL5 ENSG00000166266.14 protein_coding + + chr11:108008898-108107761:+ chr11:108073497:+ chr11:107879624-107978488:+ chr11:107944224:+ DNAL1 ENSG00000119661.15 protein_coding + + chr14:73644875-73703732:+ chr14:73651167:+ chr14:74111578-74170435:+ chr14:74117870:+ chr11:108074738,chr11:108074738,chr11:108074738 chr14:73648929,chr14:73648926,chr14:73648927 NA NA chr11:107945465,chr11:107945465,chr11:107945465 chr14:74115632,chr14:74115629,chr14:74115630 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNAL1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr14] 3 11 3 8.37 ONLY_REF_SPLICE YES_LDAS 0.1655 GT 1.7968 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32630 MCM3AP-AS1::LSS ENSG00000215424.10::ENSG00000160285.15 KYSE410 SRR8616038 SRR8652095 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2014 FALSE NA FALSE NA MCM3AP-AS1 ENSG00000215424.10 lncRNA + + chr21:46229196-46259390:+ chr21:46236326:+ chr21:47649110-47679304:+ chr21:47656240:+ LSS ENSG00000160285.15 protein_coding - - chr21:46188141-46228824:- chr21:46219572:- chr21:47608055-47648738:- chr21:47639486:- chr21:46240898 chr21:46220633 NA NA chr21:47660812 chr21:47640547 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.00Mb];LOCAL_INVERSION:+:-:[393] 1 7 1 6.88 ONLY_REF_SPLICE YES_LDAS 0.1147 GT 1.6895 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32642 POFUT2::PTCH2 ENSG00000186866.17::ENSG00000117425.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2028 FALSE NA FALSE NA POFUT2 ENSG00000186866.17 protein_coding - - chr21:45263928-45287898:- chr21:45277017:- chr21:46683843-46707813:- chr21:46696932:- PTCH2 ENSG00000117425.14 protein_coding - - chr1:44819844-44843253:- chr1:44829761:- chr1:45285516-45308925:- chr1:45295433:- chr21:45274848,chr21:45274850 chr1:44829935,chr1:44829934 NA NA chr21:46694763,chr21:46694765 chr1:45295607,chr1:45295606 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame O-FucT|45-399|1.3e-52 Patched-PARTIAL|~936-1114|1.1e-32^MMPL-PARTIAL|~936-1086|0.00021^Sterol-sensing|992-1086|0.0057 ["PTCH2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr21--chr1] 16 9 16 9 ONLY_REF_SPLICE YES_LDAS 0.2834 GT 1.5219 AG 1.7819 ENST00000349485.10 1-831 ENST00000372192.4 936-3612 chr21|-|[2]45277017-45277142[0]|[2]45278103-45278169[2]|[1]45282349-45282459[2]|[1]45283383-45283527[1]|[0]45285678-45285928[2]|[1]45287741-45287871[0]<==>chr1|-|[2]44822415-44822669[0]|[2]44823069-44823168[2]|[1]44823243-44823385[0]|[2]44826250-44826387[0]|[2]44826488-44826768[1]|[0]44826902-44827082[0]|[2]44827167-44827309[1]|[0]44827402-44827714[0]|[2]44827843-44828191[2]|[1]44828296-44828414[0]|[2]44828506-44828631[0]|[2]44828982-44829074[0]|[2]44829157-44829312[0]|[2]44829402-44829533[0]|[2]44829614-44829761[2] atggcgacactcagcttcgtcttcctgctgctgggggcagtgtcctggcctccggcttctgcctccggccaggagttctggcccggacaatcggcggccgatattctgtcgggggcggcttcccgcagacggtatcttctgtatgacgtcaaccccccggaaggcttcaacctgcgcagggatgtctatatccgaatcgcctctctcctgaagactctgctgaagacggaggagtgggtgcttgtcctgcctccatggggccgcctctatcactggcagagtcctgacatccaccaggtccggattccctggtctgagttttttgatcttccaagtctcaataaaaacatccccgtcatcgagtatgagcagttcatcgcagaatctggtgggccctttattgaccaggtttacgtcctgcaaagttacgcagaggggtggaaagaagggacctgggaagagaaggtggacgagcggccgtgtattgatcagctcctgtactcccaggacaagcacgagtactacagaggatggttttggggttatgaggagaccaggggtctaaacgtctcctgtctgtccgtccagggctcagcctccatcgtggcgcccctgctgctgagaaacacatcagcccggtccgtgatgttagacagagccgagaacctacttcacgaccactatggagggaaagaatactgggatacccgtcgcagcatggtgtttgccaggcacctgcgggaggtgggagacgagttcaggagcagacatctcaactccacggacgacgcagacaggatccccttccaggaggactggatgaagatgaagGGCAGAGGCCCTGCAGAGCACCTTCTTGCTGATGAGTCCCCGCCAGCTGTACGAGCATTTCCGGGGTGACTATCAGACACATGACATTGGCTGGAGTGAGGAGCAGGCCAGCACAGTGCTACAAGCCTGGCAGCGGCGCTTTGTGCAGCTGGCCCAGGAGGCCCTGCCTGAGAACGCTTCCCAGCAGATCCATGCCTTCTCCTCCACCACCCTGGATGACATCCTGCATGCGTTCTCTGAAGTCAGTGCTGCCCGTGTGGTGGGAGGCTATCTGCTCATGCTGGCCTATGCCTGTGTGACCATGCTGCGGTGGGACTGCGCCCAGTCCCAGGGTTCCGTGGGCCTTGCCGGGGTACTGCTGGTGGCCCTGGCGGTGGCCTCAGGCCTTGGGCTCTGTGCCCTGCTCGGCATCACCTTCAATGCTGCCACTACCCAGGTGCTGCCCTTCTTGGCTCTGGGAATCGGCGTGGATGACGTATTCCTGCTGGCGCATGCCTTCACAGAGGCTCTGCCTGGCACCCCTCTCCAGGAGCGCATGGGCGAGTGTCTGCAGCGCACGGGCACCAGTGTCGTACTCACATCCATCAACAACATGGCCGCCTTCCTCATGGCTGCCCTCGTTCCCATCCCTGCGCTGCGAGCCTTCTCCCTACAGGCGGCCATAGTGGTTGGCTGCACCTTTGTAGCCGTGATGCTTGTCTTCCCAGCCATCCTCAGCCTGGACCTACGGCGGCGCCACTGCCAGCGCCTTGATGTGCTCTGCTGCTTCTCCAGTCCCTGCTCTGCTCAGGTGATTCAGATCCTGCCCCAGGAGCTGGGGGACGGGACAGTACCAGTGGGCATTGCCCACCTCACTGCCACAGTTCAAGCCTTTACCCACTGTGAAGCCAGCAGCCAGCATGTGGTCACCATCCTGCCTCCCCAAGCCCACCTGGTGCCCCCACCTTCTGACCCACTGGGCTCTGAGCTCTTCAGCCCTGGAGGGTCCACACGGGACCTTCTAGGCCAGGAGGAGGAGACAAGGCAGAAGGCAGCCTGCAAGTCCCTGCCCTGTGCCCGCTGGAATCTTGCCCATTTCGCCCGCTATCAGTTTGCCCCGTTGCTGCTCCAGTCACATGCTAAGGCCATCGTGCTGGTGCTCTTTGGTGCTCTTCTGGGCCTGAGCCTCTACGGAGCCACCTTGGTGCAAGACGGCCTGGCCCTGACGGATGTGGTGCCTCGGGGCACCAAGGAGCATGCCTTCCTGAGCGCCCAGCTCAGGTACTTCTCCCTGTACGAGGTGGCCCTGGTGACCCAGGGTGGCTTTGACTACGCCCACTCCCAACGCGCCCTCTTTGATCTGCACCAGCGCTTCAGTTCCCTCAAGGCGGTGCTGCCCCCACCGGCCACCCAGGCACCCCGCACCTGGCTGCACTATTACCGCAACTGGCTACAGGGAATCCAGGCTGCCTTTGACCAGGACTGGGCTTCTGGGCGCATCACCCGCCACTCGTACCGCAATGGCTCTGAGGATGGGGCCCTGGCCTACAAGCTGCTCATCCAGACTGGAGACGCCCAGGAGCCTCTGGATTTCAGCCAGCTGACCACAAGGAAGCTGGTGGACAGAGAGGGACTGATTCCACCCGAGCTCTTCTACATGGGGCTGACCGTGTGGGTGAGCAGTGACCCCCTGGGTCTGGCAGCCTCACAGGCCAACTTCTACCCCCCACCTCCTGAATGGCTGCACGACAAATACGACACCACGGGGGAGAACCTTCGCATCCCGCCAGCTCAGCCCTTGGAGTTTGCCCAGTTCCCCTTCCTGCTGCGTGGCCTCCAGAAGACTGCAGACTTTGTGGAGGCCATCGAGGGGGCCCGGGCAGCATGCGCAGAGGCCGGCCAGGCTGGGGTGCACGCCTACCCCAGCGGCTCCCCCTTCCTCTTCTGGGAACAGTATCTGGGCCTGCGGCGCTGCTTCCTGCTGGCCGTCTGCATCCTGCTGGTGTGCACTTTCCTCGTCTGTGCTCTGCTGCTCCTCAACCCCTGGACGGCTGGCCTCATAGTGCTGGTCCTGGCGATGATGACAGTGGAACTCTTTGGTATCATGGGTTTCCTGGGCATCAAGCTGAGTGCCATCCCCGTGGTGATCCTTGTGGCCTCTGTAGGCATTGGCGTTGAGTTCACAGTCCACGTGGCTCTGGGCTTCCTGACCACCCAGGGCAGCCGGAACCTGCGGGCCGCCCATGCCCTTGAGCACACATTTGCCCCCGTGACCGATGGGGCCATCTCCACATTGCTGGGTCTGCTCATGCTTGCTGGTTCCCACTTTGACTTCATTGTAAGGTACTTCTTTGCGGCGCTGACAGTGCTCACGCTCCTGGGCCTCCTCCATGGACTCGTGCTGCTGCCTGTGCTGCTGTCCATCCTGGGCCCGCCGCCAGAGGTGATACAGATGTACAAGGAAAGCCCAGAGATCCTGAGTCCACCAGCTCCACAGGGAGGCGGGCTTAGGTGGGGGGCATCCTCCTCCCTGCCCCAGAGCTTTGCCAGAGTGACTACCTCCATGACCGTGGCCATCCACCCACCCCCCCTGCCTGGTGCCTACATCCATCCAGCCCCTGATGAGCCCCCTTGGTCCCCTGCTGCCACTAGCTCTGGCAACCTCAGTTCCAGGGGACCAGGTCCAGCCACTGGGTGA MATLSFVFLLLGAVSWPPASASGQEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLNSTDDADRIPFQEDWMKMKGRGPAEHLLADESPPAVRAFPG*LSDT*HWLE*GAGQHSATSLAAALCAAGPGGPA*ERFPADPCLLLHHPG*HPACVL*SQCCPCGGRLSAHAGLCLCDHAAVGLRPVPGFRGPCRGTAGGPGGGLRPWALCPARHHLQCCHYPGAALLGSGNRRG*RIPAGACLHRGSAWHPSPGAHGRVSAAHGHQCRTHIHQQHGRLPHGCPRSHPCAASLLPTGGHSGWLHLCSRDACLPSHPQPGPTAAPLPAP*CALLLLQSLLCSGDSDPAPGAGGRDSTSGHCPPHCHSSSLYPL*SQQPACGHHPASPSPPGAPTF*PTGL*ALQPWRVHTGPSRPGGGDKAEGSLQVPALCPLESCPFRPLSVCPVAAPVTC*GHRAGALWCSSGPEPLRSHLGARRPGPDGCGASGHQGACLPERPAQVLLPVRGGPGDPGWL*LRPLPTRPL*SAPALQFPQGGAAPTGHPGTPHLAALLPQLATGNPGCL*PGLGFWAHHPPLVPQWL*GWGPGLQAAHPDWRRPGASGFQPADHKEAGGQRGTDSTRALLHGADRVGEQ*PPGSGSLTGQLLPPTS*MAARQIRHHGGEPSHPASSALGVCPVPLPAAWPPEDCRLCGGHRGGPGSMRRGRPGWGARLPQRLPLPLLGTVSGPAALLPAGRLHPAGVHFPRLCSAAPQPLDGWPHSAGPGDDDSGTLWYHGFPGHQAECHPRGDPCGLCRHWR*VHSPRGSGLPDHPGQPEPAGRPCP*AHICPRDRWGHLHIAGSAHACWFPL*LHCKVLLCGADSAHAPGPPPWTRAAACAAVHPGPAARGDTDVQGKPRDPESTSSTGRRA*VGGILLPAPELCQSDYLHDRGHPPTPPAWCLHPSSP**APLVPCCH*LWQPQFQGTRSSHWV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32644 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2025 TRUE 3722 TRUE 1413 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:862270:+ chr12:861745-1020618:+ chr12:971436:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ chr12:876012 chr12:1414013 NA NA chr12:985178 chr12:1523179 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PK_Tyr_Ser-Thr|222-475|3.6e-45^Pkinase|226-479|1.9e-58^OSR1_C|500-563|1.2e-29^OSR1_C|1558-1584|3.7e-06 none ["ERC1:Oncogene"];["Klijn_CellLines","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[79057] 11 21 11 15.4 ONLY_REF_SPLICE YES_LDAS 0.2993 GT 1.9219 AG 1.6729 ENST00000530271.6 1-2139 ENST00000543086.7 2941-3267 chr12|+|[0]753566-754324[2]|[0]813642-813814[1]|[2]827042-827262[0]|[1]830003-830160[2]|[0]857161-857249[1]|[2]859245-859464[2]|[0]861013-861343[0]|[1]862083-862270[2]<==>chr12|+|[0]1444562-1444750[2]|[0]1490093-1490230[2] atgtctggcggcgccgcagagaagcagagcagcactcccggttccctgttcctctcgccgccggctcctgcccccaagaatggctccagctccgattcctccgtgggggagaaactgggagccgcggccgccgacgctgtgaccggcaggaccgaggagtacaggcgccgccgccacactatggacaaggacagccgtggggcggccgcgaccactaccaccactgagcaccgcttcttccgccggagcgtcatctgtgactccaatgccactgcactggagcttcccggccttcctctttccctgccccagcccagcatccccgcggctgtcccgcagagtgctccaccggagccccaccgggaagagaccgtgaccgccaccgccacttcccaggtagcccagcagcctccagccgctgccgcccctggggaacaggccgtcgcgggccctgccccctcgactgtccccagcagtaccagcaaagaccgcccagtgtcccagcctagccttgtggggagcaaagaggagccgccgccggcgagaagtggcagcggcggcggcagcgccaaggagccacaggaggaacggagccagcagcaggatgatatcgaagagctggagaccaaggccgtgggaatgtctaacgatggccgctttctcaagtttgacatcgaaatcggcagaggctcctttaagacggtctacaaaggtctggacactgaaaccaccgtggaagtcgcctggtgtgaactgcaggatcgaaaattaacaaagtctgagaggcagagatttaaagaagaagctgaaatgttaaaaggtcttcagcatcccaatattgttagattttatgattcctgggaatccacagtaaaaggaaagaagtgcattgttttggtgactgaacttatgacgtctggaacacttaaaacgtatctgaaaaggtttaaagtgatgaagatcaaagttctaagaagctggtgccgtcagatccttaaaggtcttcagtttcttcatactcgaactccacctatcattcaccgcgatcttaaatgtgacaacatctttatcaccggccctactggctcagtcaagattggagacctcggtctggcaaccctgaagcgggcttcttttgccaagagtgtgataggtaccccagagttcatggcccctgagatgtatgaggagaaatatgatgaatccgttgacgtttatgcttttgggatgtgcatgcttgagatggctacatctgaatatccttactcggagtgccaaaatgctgcacagatctaccgtcgcgtgaccagtggggtgaagccagccagttttgacaaagtagcaattcctgaagtgaaggaaattattgaaggatgcatacgacaaaacaaagatgaaagatattccatcaaagaccttttgaaccatgccttcttccaagaggaaacaggagtacgggtagaattagcagaagaagatgatggagaaaaaatagccataaaattatggctacgtattgaagatattaagaaattaaagggaaaatacaaagataatgaagctattgagttttcttttgatttagagagagatgtcccagaagatgttgcacaagaaatggtagagtctgggtatgtctgtgaaggtgatcacaagaccatggctaaagctatcaaagacagagtatcattaattaagaggaaacgagagcagcggcagttggtacgggaggagcaagaaaaaaaaaagcaggaagagagcagtctcaaacagcaggtagaacaatccagtgcttcccagacaggaatcaagcagctcccttctgctagcaccggcatacctactgcttctaccacttcagcttcagtttctacacaagtagaacctgaagaacctgaggcagatcaacatcaacaactacagtaccagcaacccagtatatctgtgttatctgatgggacggttgacagtggtcagggatcctctgtcttcacagaatctcgagtgagcagccaacagacagtttcatatggttcccaacatgaacaggcacattctacaggcacagtcccagggcatataccttctactgtccaagcacagtctcagccccatggggtatatccaccctcaagtgtgATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAGCTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCCTGGAAGAGTCCTCTTGA MSGGAAEKQSSTPGSLFLSPPAPAPKNGSSSDSSVGEKLGAAAADAVTGRTEEYRRRRHTMDKDSRGAAATTTTTEHRFFRRSVICDSNATALELPGLPLSLPQPSIPAAVPQSAPPEPHREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVSQPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKSVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEETGVRVELAEEDDGEKIAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRKREQRQLVREEQEKKKQEESSLKQQVEQSSASQTGIKQLPSASTGIPTASTTSASVSTQVEPEEPEADQHQQLQYQQPSISVLSDGTVDSGQGSSVFTESRVSSQQTVSYGSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSVIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGLTPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNAELQEFANAILQQIADHCPDILEQVVNALEESS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 32647 FLVCR1::CDC42BPA ENSG00000162769.13::ENSG00000143776.20 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FLVCR1 ENSG00000162769.13 protein_coding + + chr1:212858275-212899363:+ chr1:212888594:+ chr1:213031617-213072705:+ chr1:213061936:+ CDC42BPA ENSG00000143776.20 protein_coding - - chr1:226989865-227318492:- chr1:227081017:- chr1:227177566-227506193:- chr1:227268718:- chr1:212889140 chr1:227086033 NA NA chr1:213062482 chr1:227273734 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MFS_1|116-477|2e-32^MFS_1|405-512|4.8e-09 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:14.09Mb] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1587 GT 1.9899 AG 1.6729 ENST00000366971.9 1-1413 ENST00000366766.8 2356-5265 chr1|+|[0]212858453-212859190[2]|[0]212863725-212863869[0]|[1]212872678-212872818[0]|[1]212883371-212883438[2]|[0]212885293-212885396[1]|[2]212887891-212888001[1]|[2]212888489-212888594[2]<==>chr1|-|[2]226994268-226994399[0]|[2]226994823-226994980[1]|[0]227004994-227005111[0]|[2]227016080-227016197[2]|[1]227016927-227017050[1]|[0]227023263-227023347[0]|[2]227026055-227026152[1]|[0]227028657-227029250[1]|[0]227030408-227030470[1]|[0]227031298-227031514[0]|[2]227033334-227033415[2]|[1]227034655-227034794[0]|[2]227035471-227035607[1]|[0]227040131-227040236[0]|[2]227047927-227048010[0]|[2]227051881-227051985[0]|[2]227069777-227069853[1]|[0]227072208-227072299[2]|[1]227073864-227074012[0]|[2]227074259-227074364[2]|[1]227080893-227081017[0] atggcgcggccagacgatgaggagggggcggcggtggcgcccggacacccgctcgcgaaaggatacctcccgttgccgaggggcgcgcccgttgggaaggagagcgtggagctgcagaacgggcccaaagcgggcaccttcccggtgaatggggccccccgggacagcctcgctgccgcctcgggagttctgggcgggcctcagactccactggccccagaagaggagacccaggcccggctgctgcctgcgggcgcgggagctgagaccccgggggccgagagcagcccgctgccccttacggcgctctccccgcggcgcttcgtggtgctcctgatcttcagcctgtactcgctggtcaacgcctttcagtggatccagtacagcatcattagcaacgtcttcgagggcttctacggtgtcaccttgctgcacatcgactggctgtccatggtgtacatgctggcctacgtgcccctcatcttcccggccacctggctgctggacaccagaggcctgcggctcaccgccctgctgggctccggcctcaactgcctgggtgcctggatcaagtgcggcagtgtgcagcagcatctcttctgggtcaccatgttgggccagtgcttgtgctcggtggcccaggtgttcatcctgggcttgccctcccgcatcgcctcagtgtggtttgggcccaaagaggtgtccacagcttgtgccaccgccgtgctgggcaatcagcttggaactgcagttggctttttgctaccaccagttttagtacccaacacacagaatgacacaaatctcctggcttgtaatatcagcaccatgttttatggaacatcagctgttgccacacttttatttattttaacagcaattgccttcaaagaaaaacctcggtatccaccaagtcaggctcaagcagctcttcaagacagtccccctgaagagtactcctataagaaatcaataagaaacctgtttaaaaacattccttttgtccttctgttgatcacttatggtatcatgactggtgccttttattcagtctcaacgttattaaatcaaatgatattgacatattatgagggagaagaagtcaatgctggaaggattgggctaacgctagtagtagctggaatggtgggctctattctttgtggcttatggctggattatactaaaacatacaaacagactactctgatagtttatattttgtcttttattggaatggttatctttactttcacattggaccttagatatattatcatcgtgtttgttactggaggggtgcttggcttcttcatgactggttacctccctttgggttttgaatttgctgttgaaatcacttaccctgaatctgaaggtacttcatctggtcttcttaatgcttctgcacagCTTACTACTTTGTATGAGAACTTAAGTATACACAACCAGCAGTTAGAAGAAGAGGTTAAAGATCTAGCAGACAAGAAAGAATCAGTTGCACATTGGGAAGCCCAAATCACAGAAATAATTCAGTGGGTCAGCGATGAAAAGGATGCACGAGGGTATCTTCAGGCCTTAGCTTCTAAAATGACTGAAGAATTGGAGGCATTAAGAAATTCCAGCTTGGGTACACGAGCAACAGATATGCCCTGGAAAATGCGTCGTTTTGCGAAACTGGATATGTCAGCTAGACTGGAGTTGCAGTCGGCTCTGGATGCAGAAATAAGAGCCAAACAGGCCATCCAAGAAGAGTTGAATAAAGTTAAAGCATCTAATATCATAACAGAATGTAAACTAAAAGATTCAGAGAAGAAGAACTTGGAACTACTCTCAGAAATCGAACAGCTGATAAAGGACACTGAAGAGCTTAGATCTGAAAAGGGTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAAACTGATCCCGTTGAGAACACATATGTATGGAACCCGAGCGTCAAGTTTCACATCCAGTCACGGTCCACATCTCCTTCCACATCTAGTGAAGCTGAGCCAGTTAAGACTGTAGACTCCACTCCACTTTCAGTTCACACACCAACCTTAAGGAAAAAAGGATGTCCTGGTTCAACTGGCTTTCCACCTAAGCGCAAGACTCACCAGTTTTTTGTAAAATCTTTTACTACTCCTACCAAGTGTCATCAGTGTACCTCCTTGATGGTGGGTTTAATAAGACAGGGCTGTTCATGTGAAGTGTGTGGATTCTCATGCCATATAACTTGTGTAAACAAAGCTCCAACCACTTGTCCAGTTCCTCCTGAACAGACAAAAGGTCCCCTGGGTATAGATCCTCAGAAAGGAATAGGAACAGCATATGAAGGTCATGTCAGGATTCCTAAGCCAGCTGGAGTGAAGAAAGGGTGGCAGAGAGCACTGGCTATAGTGTGTGACTTCAAACTCTTTCTGTACGATATTGCTGAAGGAAAAGCATCTCAGCCCAGTGTTGTCATTAGTCAAGTGATTGACATGAGGGATGAAGAATTTTCTGTGAGTTCAGTCTTGGCTTCTGATGTTATCCATGCAAGTCGGAAAGATATACCCTGTATATTTAGGGTCACAGCTTCCCAGCTCTCAGCATCTAATAACAAATGTTCAATCCTGATGCTAGCAGACACTGAGAATGAGAAGAATAAGTGGGTGGGAGTGCTGAGTGAATTGCACAAGATTTTGAAGAAAAACAAATTCAGAGACCGCTCAGTCTATGTTCCCAAAGAGGCTTATGACAGCACTCTACCCCTCATTAAAACAACCCAGGCAGCCGCAATCATAGATCATGAAAGAATTGCTTTGGGAAACGAAGAAGGGTTATTTGTTGTACATGTCACCAAAGATGAAATTATTAGAGTTGGTGACAATAAGAAGATTCATCAGATTGAACTCATTCCAAATGATCAGCTTGTTGCTGTGATCTCAGGACGAAATCGTCATGTACGACTTTTTCCTATGTCAGCATTGGATGGGCGAGAGACCGATTTTTACAAGCTGTCAGAAACTAAAGGGTGTCAAACCGTAACTTCTGGAAAGGTGCGCCATGGAGCTCTCACATGCCTGTGTGTGGCTATGAAAAGGCAGGTCCTCTGTTATGAACTATTTCAGAGCAAGACCCGTCACAGAAAATTTAAAGAAATTCAAGTCCCATATAATGTCCAGTGGATGGCAATCTTCAGTGAACAACTCTGTGTGGGATTCCAGTCAGGATTTCTAAGATACCCCTTGAATGGAGAAGGAAATCCATACAGTATGCTCCATTCAAATGACCATACACTATCATTTATTGCACATCAACCAATGGATGCTATCTGCGCAGTTGAGATCTCCAGTAAAGAATATCTGCTGTGTTTTAACAGCATTGGGATATACACTGACTGCCAGGGCCGAAGATCTAGACAACAGGAATTGATGTGGCCAGCAAATCCTTCCTCTTGTTGTTACAATGCACCATATCTCTCGGTGTACAGTGAAAATGCAGTTGATATCTTTGATGTGAACTCCATGGAATGGATTCAGACTCTTCCTCTCAAAAAGGTTCGACCCTTAAACAATGAAGGATCATTAAATCTTTTAGGGTTGGAGACCATTAGATTAATATATTTCAAAAATAAGATGGCAGAAGGGGACGAACTGGTAGTACCTGAAACATCAGATAATAGTCGGAAACAAATGGTTAGAAACATTAACAATAAGCGGCGTTATTCCTTCAGAGTCCCAGAAGAGGAAAGGATGCAGCAGAGGAGGGAAATGCTACGAGATCCAGAAATGAGAAATAAATTAATTTCTAATCCAACTAATTTTAATCACATAGCACACATGGGTCCTGGAGATGGAATACAGATCCTGAAAGATCTGCCCATGAACCCTCGGCCTCAGGAAAGTCGGACAGTATTCAGTGGCTCAGTCAGTATTCCATCTATCACCAAATCCCGCCCTGAGCCAGGCCGCTCCATGAGTGCTAGCAGTGGCTTGTCAGCAAGGTCATCCGCACAGAATGGCAGCGCATTAAAGAGGGAATTCTCTGGAGGAAGCTACAGTGCCAAGCGGCAGCCCATGCCCTCCCCGTCAGAGGGCTCTTTGTCCTCTGGAGGCATGGACCAAGGAAGTGATGCCCCAGCGAGGGACTTTGACGGAGAGGACTCTGACTCTCCGAGGCATTCCACAGCTTCCAACAGTTCCAACCTAAGCAGCCCCCCAAGCCCAGCTTCACCCCGAAAAACCAAGAGCCTCTCCCTGGAGAGCACTGACCGCGGGAGCTGGGACCCGTGA MARPDDEEGAAVAPGHPLAKGYLPLPRGAPVGKESVELQNGPKAGTFPVNGAPRDSLAAASGVLGGPQTPLAPEEETQARLLPAGAGAETPGAESSPLPLTALSPRRFVVLLIFSLYSLVNAFQWIQYSIISNVFEGFYGVTLLHIDWLSMVYMLAYVPLIFPATWLLDTRGLRLTALLGSGLNCLGAWIKCGSVQQHLFWVTMLGQCLCSVAQVFILGLPSRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNDTNLLACNISTMFYGTSAVATLLFILTAIAFKEKPRYPPSQAQAALQDSPPEEYSYKKSIRNLFKNIPFVLLLITYGIMTGAFYSVSTLLNQMILTYYEGEEVNAGRIGLTLVVAGMVGSILCGLWLDYTKTYKQTTLIVYILSFIGMVIFTFTLDLRYIIIVFVTGGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQLTTLYENLSIHNQQLEEEVKDLADKKESVAHWEAQITEIIQWVSDEKDARGYLQALASKMTEELEALRNSSLGTRATDMPWKMRRFAKLDMSARLELQSALDAEIRAKQAIQEELNKVKASNIITECKLKDSEKKNLELLSEIEQLIKDTEELRSEKGIEHQDSQHSFLAFLNTPTDALDQFETDPVENTYVWNPSVKFHIQSRSTSPSTSSEAEPVKTVDSTPLSVHTPTLRKKGCPGSTGFPPKRKTHQFFVKSFTTPTKCHQCTSLMVGLIRQGCSCEVCGFSCHITCVNKAPTTCPVPPEQTKGPLGIDPQKGIGTAYEGHVRIPKPAGVKKGWQRALAIVCDFKLFLYDIAEGKASQPSVVISQVIDMRDEEFSVSSVLASDVIHASRKDIPCIFRVTASQLSASNNKCSILMLADTENEKNKWVGVLSELHKILKKNKFRDRSVYVPKEAYDSTLPLIKTTQAAAIIDHERIALGNEEGLFVVHVTKDEIIRVGDNKKIHQIELIPNDQLVAVISGRNRHVRLFPMSALDGRETDFYKLSETKGCQTVTSGKVRHGALTCLCVAMKRQVLCYELFQSKTRHRKFKEIQVPYNVQWMAIFSEQLCVGFQSGFLRYPLNGEGNPYSMLHSNDHTLSFIAHQPMDAICAVEISSKEYLLCFNSIGIYTDCQGRRSRQQELMWPANPSSCCYNAPYLSVYSENAVDIFDVNSMEWIQTLPLKKVRPLNNEGSLNLLGLETIRLIYFKNKMAEGDELVVPETSDNSRKQMVRNINNKRRYSFRVPEEERMQQRREMLRDPEMRNKLISNPTNFNHIAHMGPGDGIQILKDLPMNPRPQESRTVFSGSVSIPSITKSRPEPGRSMSASSGLSARSSAQNGSALKREFSGGSYSAKRQPMPSPSEGSLSSGGMDQGSDAPARDFDGEDSDSPRHSTASNSSNLSSPPSPASPRKTKSLSLESTDRGSWDP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase MRCK alpha AGC DMPK GEK Q5VT25 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32650 MRPL33::SLC4A1AP ENSG00000243147.8::ENSG00000163798.14 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2031 FALSE NA FALSE NA MRPL33 ENSG00000243147.8 protein_coding + + chr2:27771717-27988087:+ chr2:27782694:+ chr2:27994584-28210954:+ chr2:28005561:+ SLC4A1AP ENSG00000163798.14 protein_coding + + chr2:27663426-27695366:+ chr2:27682248:+ chr2:27886293-27918233:+ chr2:27905115:+ chr2:27813290,chr2:27813290,chr2:27813290 chr2:27680317,chr2:27680311,chr2:27680297 NA NA chr2:28036157,chr2:28036157,chr2:28036157 chr2:27903184,chr2:27903178,chr2:27903164 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.08Mb];LOCAL_REARRANGEMENT:+:[76741] 8 9 8 9 ONLY_REF_SPLICE YES_LDAS 0.1927 GT 1.9656 AG 1.8892 ENST00000448427.1 1-164 ENST00000696015.1 900-1527 chr2|+|[0]27771778-27771799[0]|[1]27772674-27772692[1]|[2]27782572-27782694[1]<==>chr2|+|[2]27682248-27682359[2]|[0]27685037-27685277[0]|[1]27687934-27688020[0]|[1]27688700-27688767[2]|[0]27693685-27693754[0]|[1]27694634-27694683[2] atgttcctctccgcggtcttctttgccaagagcaagtcaaagctgtggttatggtttttggaagaccacagaggtgaaatgtcattttcatcacatcatattaagggcacatatgatcaacatgacttcttactgatggtgttaaccctggtcacctggctaagGACTGAAACTCAGACTACAGGTGCAGAAAACAAAGCTAAAAAGCTTACATTGCCTCTATTTGGTGCCATGAAAGGAGGAAGCAAATTCAAATTAAAAACTGGAACAGTAGGGAAGTTACCCCCCAAGCGTCCAGAACTCCCTCCAACTCTAATGAGAATGAAAGATGAGCCTGAAGTAGAAGAGGAGGAGGAAGAGGAAGAGGAAGAAGAGAAAGAAAAGGAGGAGCATGAAAAGAAAAAACTGGAGGATGGAAGCCTCAGTAGGCCACAGCCAGAGATAGAGCCAGAAGCAGCAGTGCAGGAAATGAGGCCTCCCACAGATCTCACACATTTTAAAGAAACCCAAACCCATGAAAACATGTCTCAACTTAGCGAGGAAGAACAGAATAAAGATTATCAAGACTGTAGCAAAACCACTTCATTGTGCGCAGGACCCTCAGCATCAAAGAATGAATATGAGAAAAGCAGAGGTGAATTGAAGAAAAAGAAAACACCTGGTCCAGGCAAACTTCCACCAACACTTTCTTCCAAATATCCTGAAGATGACCCAGACTACTGTGTGTGGGTCCCACCTGAAGGTCAAAGTGGAGATGGCAGAACCCATCTTAATGACAAGTATGGCTATTGA MFLSAVFFAKSKSKLWLWFLEDHRGEMSFSSHHIKGTYDQHDFLLMVLTLVTWLRTETQTTGAENKAKKLTLPLFGAMKGGSKFKLKTGTVGKLPPKRPELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEIEPEAAVQEMRPPTDLTHFKETQTHENMSQLSEEEQNKDYQDCSKTTSLCAGPSASKNEYEKSRGELKKKKTPGPGKLPPTLSSKYPEDDPDYCVWVPPEGQSGDGRTHLNDKYGY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Kidney no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32656 ACOT7::PLEKHG5 ENSG00000097021.21::ENSG00000171680.23 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2033 FALSE NA FALSE NA ACOT7 ENSG00000097021.21 protein_coding - - chr1:6264269-6393767:- chr1:6360570:- chr1:6324329-6453827:- chr1:6420630:- PLEKHG5 ENSG00000171680.23 protein_coding - - chr1:6467122-6520074:- chr1:6475138:- chr1:6527182-6580134:- chr1:6535198:- chr1:6360247 chr1:6475353 NA NA chr1:6420307 chr1:6535413 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame 4HBT-PARTIAL|39-83~|1.9e-18^TBCC-PARTIAL|63-83~|0.084 CCD97-like_C|338-347|2.2^RhoGEF|378-563|1.7e-39^PH_13|508-562|0.18^PH_16|598-716|1.5e-05^PH_13|619-720|0.00019^PH_10|621-660|2.7e-06^PH_5|622-668|3.9e-06^PH|624-719|4.4e-05^CCD97-like_C|713-770|1.5e-05^DUF4746|732-771|0.0071 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.07Mb];LOCAL_REARRANGEMENT:-:[71701] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1133 GT 1.5058 AG 1.5301 ENST00000377845.7 1-83 ENST00000377732.5 322-3132 chr1|-|[1]6360570-6360652[0]<==>chr1|-|[2]6467563-6467572[2]|[1]6467825-6468586[2]|[1]6469042-6469241[0]|[2]6469335-6469450[1]|[0]6469544-6469676[0]|[2]6470236-6470355[0]|[2]6470506-6470643[0]|[2]6470735-6470884[0]|[2]6470990-6471100[0]|[2]6471488-6471637[0]|[2]6471758-6471808[0]|[2]6472527-6472622[0]|[2]6472986-6473174[0]|[2]6473251-6473454[0]|[2]6474013-6474164[1]|[0]6474451-6474587[2]|[1]6475047-6475138[0] atgctcctgcttcggagaagcttgtcactaaacgtcctcagaaaggaagtcgacagggcctgttttggggagaaggccaaacaGACCCAAGCAAGGAATGCTTCACTCTGAAATTTGACCTGAATGTGGACATTGAGACAGAGATCGTCCCAGCCATGAAGAAGAAGTCACTGGGGGAGGTGCTGCTGCCTGTATTTGAAAGGAAGGGCATTGCGCTGGGCAAAGTGGACATCTACCTGGACCAGTCCAACACACCCCTGTCCCTCACCTTCGAGGCCTACAGGTTCGGGGGACACTACCTTCGTGTCAAAGCCCCAGCCAAGCCTGGAGATGAGGGCAAGGTGGAGCAGGGCATGAAGGACTCCAAGTCCCTGAGTTTGCCGATTCTGCGGCCAGCTGGGACCGGGCCCCCCGCCCTGGAGCGTGTGGACGCCCAGAGCCGCCGGGAGAGCCTGGACATCTTGGCCCCTGGCCGCCGCCGCAAGAACATGTCGGAGTTCCTGGGGGAGGCGAGCATCCCCGGGCAGGAGCCCCCCACGCCCTCCAGCTGCTCTCTGCCCAGCGGCAGCAGTGGCAGCACCAACACTGGCGACAGCTGGAAGAACCGGGCGGCCAGTCGCTTCAGCGGCTTTTTCAGCTCCGGCCCCAGCACCAGCGCCTTTGGCCGGGAGGTAGACAAGATGGAGCAGCTGGAGGGCAAGCTGCACACCTACAGCCTCTTCGGGCTGCCCAGGCTGCCCCGGGGGCTGCGCTTCGACCATGACTCCTGGGAGGAGGAGTACGATGAAGACGAGGATGAGGACAATGCCTGCCTGAGGCTGGAGGACAGCTGGCGGGAGCTCATTGATGGGCATGAGAAGCTGACCCGGCGGCAGTGCCACCAGCAGGAGGCGGTGTGGGAGCTGCTGCACACGGAGGCCTCCTACATCAGGAAACTGCGGGTGATCATCAACCTGTTCCTGTGCTGCCTCCTGAACCTGCAAGAGTCAGGGCTGCTGTGTGAGGTGGAGGCGGAGCGCCTGTTCAGCAACATCCCGGAGATCGCGCAGCTGCACCGCAGGCTGTGGGCTAGCGTGATGGCGCCGGTGCTGGAGAAGGCGCGGCGCACGCGAGCGCTGCTACAGCCCGGGGACTTCCTCAAAGGCTTCAAGATGTTCGGCTCGCTCTTCAAGCCCTACATCCGCTACTGCATGGAGGAGGAGGGCTGCATGGAGTACATGCGCGGCCTGCTGCGCGACAACGACCTCTTCCGGGCCTACATCACGTGGGCGGAGAAGCACCCACAGTGCCAGAGGCTGAAGCTGAGCGACATGCTGGCCAAACCCCACCAGCGGCTCACCAAGTACCCGCTGCTGCTCAAGTCGGTGCTGAGGAAGACCGAGGAGCCGCGCGCCAAGGAGGCCGTCGTCGCCATGATCGGCTCCGTGGAGCGCTTCATCCACCACGTGAACGCGTGCATGCGGCAGCGGCAGGAGCGGCAGCGGCTGGCGGCCGTGGTGAGCCGCATCGACGCCTACGAGGTGGTGGAAAGCAGCAGCGACGAAGTGGACAAGCTCCTGAAGGAATTTCTGCACCTGGACTTGACAGCGCCCATCCCTGGCGCCTCCCCGGAGGAGACGCGGCAGCTGCTGCTGGAGGGGAGCCTGAGGATGAAGGAGGGGAAGGACAGCAAGATGGATGTGTACTGCTTCCTCTTCACGGATCTGCTGTTGGTGACCAAAGCAGTGAAGAAGGCAGAGAGGACCAGGGTCATCAGGCCACCCCTGCTCGTGGACAAGATTGTGTGCCGGGAGCTACGGGACCCTGGGTCCTTCCTCCTTATCTACCTGAATGAGTTTCACAGTGCTGTAGGGGCCTACACGTTCCAGGCCAGTGGCCAGGCCTTGTGCCGTGGCTGGGTGGACACCATTTACAATGCCCAGAACCAGCTGCAACAGCTGCGTGCACAGGAGCCCCCAGGCAGTCAGCAGCCCCTGCAGAGCCTGGAAGAGGAGGAGGATGAGCAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGCGAGGACAGTGGCACTTCAGCTGCCAGCTCCCCTACCATCATGCGGAAAAGCAGCGGCAGCCCCGACTCTCAGCACTGTGCCTCAGATGGCTCCACGGAGACCCTGGCCATGGTTGTGGTAGAGCCTGGGGACACGCTGTCCTCCCCCGAGTTCGACAGCGGTCCTTTCAGCTCCCAGTCTGATGAGACCTCTCTCAGCACCACTGCCTCATCTGCCACGCCCACCAGTGAGCTGCTGCCCCTGGGTCCGGTGGACGGCCGCTCCTGCTCCATGGACTCTGCCTACGGCACCCTCTCCCCAACCTCCTTACAAGACTTTGTGGCCCCAGGCCCAATGGCAGAGCTAGTGCCTCGGGCCCCAGAGTCCCCACGAGTTCCTTCCCCTCCACCCTCGCCCCGTCTCCGCCGCCGCACCCCTGTCCAGCTGTTGAGCTGCCCGCCCCACCTGCTCAAGTCTAAGTCCGAGGCCAGCCTCCTCCAGCTGCTGGCAGGGGCTGGCACCCATGGGACACCCTCTGCCCCCAGCCGCAGCCTGTCAGAGCTCTGCCTGGCTGTTCCAGCCCCAGGTATTAGGACTCAGGGCTCCCCTCAGGAAGCTGGGCCCAGCTGGGATTGCCGAGGGGCCCCTAGCCCTGGCAGCGGTCCTGGGCTAGTCGGCTGCCTGGCCGGGGAACCTGCAGGCTCCCACAGGAAGAGGTGTGGAGACCTGCCCTCGGGGGCCTCTCCCAGGGTCCAGCCTGAGCCCCCACCAGGGGTCTCTGCCCAGCACAGGAAGCTGACCCTGGCCCAGCTCTACCGAATCAGGACCACCCTGCTGCTTAACTCCACGCTCACTGCCTCGGAGGTCTGA MLLLRRSLSLNVLRKEVDRACFGEKAKQTQARNASL*NLT*MWTLRQRSSQP*RRSHWGRCCCLYLKGRALRWAKWTSTWTSPTHPCPSPSRPTGSGDTTFVSKPQPSLEMRARWSRA*RTPSP*VCRFCGQLGPGPPPWSVWTPRAAGRAWTSWPLAAAARTCRSSWGRRASPGRSPPRPPAALCPAAAVAAPTLATAGRTGRPVASAAFSAPAPAPAPLAGR*TRWSSWRASCTPTASSGCPGCPGGCASTMTPGRRSTMKTRMRTMPA*GWRTAGGSSLMGMRS*PGGSATSRRRCGSCCTRRPPTSGNCG*SSTCSCAAS*TCKSQGCCVRWRRSACSATSRRSRSCTAGCGLA*WRRCWRRRGARERCYSPGTSSKASRCSARSSSPTSATAWRRRAAWSTCAACCATTTSSGPTSRGRRSTHSARG*S*ATCWPNPTSGSPSTRCCSSRC*GRPRSRAPRRPSSP*SAPWSASSTT*TRACGSGRSGSGWRPW*AASTPTRWWKAAATKWTSS*RNFCTWT*QRPSLAPPRRRRGSCCWRGA*G*RRGRTARWMCTASSSRICCW*PKQ*RRQRGPGSSGHPCSWTRLCAGSYGTLGPSSLST*MSFTVL*GPTRSRPVARPCAVAGWTPFTMPRTSCNSCVHRSPQAVSSPCRAWKRRRMSRRRKRRRRRRRRKARTVALQLPAPLPSCGKAAAAPTLSTVPQMAPRRPWPWLW*SLGTRCPPPSSTAVLSAPSLMRPLSAPLPHLPRPPVSCCPWVRWTAAPAPWTLPTAPSPQPPYKTLWPQAQWQS*CLGPQSPHEFLPLHPRPVSAAAPLSSC*AARPTCSSLSPRPASSSCWQGLAPMGHPLPPAAACQSSAWLFQPQVLGLRAPLRKLGPAGIAEGPLALAAVLG*SAAWPGNLQAPTGRGVETCPRGPLPGSSLSPHQGSLPSTGS*PWPSSTESGPPCCLTPRSLPRRS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus,Stomach exact TRUE Esophageal carcinoma OESOPHAGUS exact 6341162|6354924 FALSE|FALSE 6556629|6556629 FALSE|FALSE PARTIALLY Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32658 FAT2::USP10 ENSG00000086570.13::ENSG00000103194.16 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2029 FALSE NA FALSE NA FAT2 ENSG00000086570.13 protein_coding - - chr5:151504092-151591331:- chr5:151517620:- chr5:150883653-150970892:- chr5:150897181:- USP10 ENSG00000103194.16 protein_coding + + chr16:84699986-84779922:+ chr16:84733435:+ chr16:84733592-84813528:+ chr16:84767041:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Cadherin|38-138|1.6e-06^Cadherin_4|134-207|0.11^Cadherin|153-229|2.8e-14^DUF4394|179-232|0.0033^DUF5980|261-281|8.3^Cadherin|367-436|8.7e-05^RET_CLD1|394-428|3.4^Cadherin_4|449-495|0.71^Cadherin|463-542|2.7e-19^Cadherin|571-658|4.6e-11^Cadherin_2|588-622|0.16^Cadherin_3|707-762|1.8^Cadherin_4|720-759|2.2^Cadherin|721-810|1.1e-21^Cadherin_2|753-781|0.45^Cadherin_3|805-863|0.00067^Cadherin_4|806-861|0.014^Cadherin|825-915|3.4e-21^Cadherin_2|828-885|0.00024^Cadherin_3|911-971|0.047^Cadherin_4|913-975|0.065^Cadherin|933-1018|1.1e-15^Cadherin_2|963-990|0.041^RET_CLD1|972-989|4.4^Cadherin|1038-1128|5.2e-22^Cadherin_2|1079-1098|3.6^DUF5980|1104-1163|9.8^Cadherin_3|1122-1187|0.00019^Cadherin_4|1122-1178|0.00064^Cadherin|1145-1232|2.1e-21^RET_CLD1|1148-1206|0.13^Cadherin_2|1175-1204|0.1^Cadherin_3|1228-1245|3.9^Cadherin|1260-1334|3e-11^Cadherin_4|1273-1298|8.8^RET_CLD1|1284-1316|7.8^DUF4394|1287-1309|2.1^Cadherin|1354-1433|4.8e-11^Cadherin_2|1388-1409|3.6^DUF5980|1414-1436|0.26^Cadherin_3|1436-1490|0.25^Cadherin|1453-1546|8.8e-11^RET_CLD1|1457-1512|1.3^Cadherin_2|1493-1513|0.19^DUF4394|1496-1513|1.3^Cadherin|1560-1650|1.5e-20^RET_CLD1|1570-1626|0.14^Cadherin_3|1646-1723|2.3^RET_CLD1|1660-1730|0.024^Cadherin|1665-1747|3.2e-13^Cadherin_2|1699-1723|0.59^Cadherin_3|1743-1799|2.9^Cadherin|1782-1860|9.8e-14^Cadherin_4|1789-1824|3.1^Cadherin_2|1804-1833|1.8^Cadherin_3|1855-1906|0.18^Cadherin_4|1856-1902|1^Cadherin|1888-1946|0.00025^DUF5980|1922-1959|1.2^Cadherin|1976-2061|1.8e-10^Cadherin_3|2054-2098|0.098^Cadherin_4|2056-2098|0.78^Cadherin|2080-2163|7.1e-19^Cadherin|2176-2262|1.8e-12^Cadherin_2|2207-2234|1.5^Cadherin_3|2256-2314|0.0064^Cadherin_4|2256-2315|0.00035^RET_CLD1|2272-2343|0.015^Cadherin|2277-2369|1.1e-24^DUF4394|2307-2338|2.5^Cadherin_2|2317-2340|0.6^Cadherin_3|2364-2429|0.052^Cadherin_4|2365-2376|7.3^Cadherin|2384-2459|1.1e-12^DUF5980|2449-2472|0.87^Cadherin_3|2465-2525|0.18^Cadherin|2486-2573|2.5e-16^Cadherin_2|2520-2547|1.1^Cadherin_3|2569-2623|0.55^Cadherin_4|2570-2624|0.029^Cadherin|2590-2681|2.1e-10^Cadherin|2696-2787|1e-11^RET_CLD1|2734-2761|2.6^Cadherin_2|2735-2759|0.95^DUF4394|2757-2863|0.24^Cadherin_3|2782-2835|0.039^Cadherin_4|2782-2829|0.024^Cadherin|2802-2897|4.7e-22^RET_CLD1|2809-2866|2.2^Cadherin_2|2845-2868|3.5^Cadherin_3|2889-2937|0.28^Cadherin_4|2891-2919|2.4^Cadherin|2911-2999|2e-15^DUF5980|2979-2999|8.8^Cadherin_3|2994-3013|0.17^Cadherin_4|2996-3056|0.9^Cadherin|3016-3103|3.5e-20^Cadherin_2|3056-3077|0.023^Cadherin_3|3095-3162|0.0095^Cadherin_4|3097-3167|0.0098^Cadherin|3123-3208|7.2e-17^RET_CLD1|3155-3177|1.7^Cadherin_4|3203-3268|0.15^Cadherin|3224-3312|8.9e-16^RET_CLD1|3230-3282|0.00075^Cadherin_2|3247-3282|0.00013^Cadherin_3|3305-3376|0.0012^Cadherin_4|3306-3373|0.013^RET_CLD1|3321-3391|0.66^Cadherin|3326-3416|4.8e-26^Cadherin_2|3367-3388|0.034^Cadherin_3|3411-3458|0.002^Cadherin_4|3412-3480|0.0037^Cadherin|3431-3522|4.9e-19^Cadherin_4|3528-3575|0.63^Cadherin|3538-3617|2.8e-08^DUF5980|3592-3618|0.026^Laminin_G_2|3800-3920|4.6e-25^Laminin_G_1|3801-3924|5.5e-12^EGF|3951-3982|1.2e-07^EGF_2|3951-3983|1.6e-05^hEGF|3956-3976|8.7e-06^EGF|3993-4020|5.8e-08^hEGF|3995-4013|0.0069^EGF_2|3995-4021|0.016 PAM2|83-98|3.6e-08^YukD|258-294|8.9e-05^YukD|299-319|4^UCH|419-796|3.2e-48^UCH_1|420-448|0.0014^UCH_1|591-756|9.6e-09^YukD|665-691|0.3 ["FAT2:Oncogene"];["USP10:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr5--chr16] 6 13 6 13 ONLY_REF_SPLICE YES_LDAS 0.2154 GT 1.8892 AG 1.4566 ENST00000261800.6 1-11463 ENST00000570191.5 34-2409 chr5|-|[2]151517620-151517765[1]|[0]151521276-151522086[0]|[2]151525768-151525965[0]|[2]151527234-151527377[0]|[2]151527996-151528133[0]|[2]151529178-151529392[1]|[0]151531587-151531970[1]|[0]151534409-151534642[1]|[0]151537793-151537946[0]|[2]151540567-151540763[1]|[0]151542285-151546337[1]|[0]151549295-151549505[0]|[2]151550590-151550871[0]|[2]151551467-151551606[1]|[0]151553177-151553387[0]|[2]151554362-151554673[0]|[2]151556344-151556402[1]|[0]151563325-151563639[1]|[0]151565673-151568931[0]<==>chr16|+|[0]84733435-84733503[2]|[0]84740309-84740369[0]|[1]84744633-84745673[0]|[1]84758716-84758807[2]|[0]84759363-84759472[1]|[2]84759891-84759946[0]|[1]84760172-84760275[2]|[0]84762989-84763088[0]|[1]84764086-84764263[1]|[2]84768193-84768358[2]|[0]84772541-84772685[0]|[1]84775160-84775225[0]|[1]84778895-84779082[2] atgactattgccctgctgggttttgccatattcttgctccattgtgcgacctgtgagaagcctctagaagggattctctcctcctctgcttggcacttcacacactcccattacaatgccaccatctatgaaaattcttctcccaagacctatgtggagagcttcgagaaaatgggcatctacctcgcggagccacagtgggcagtgaggtaccggatcatctctggggatgtggccaatgtatttaaaactgaggagtatgtggtgggcaacttctgcttcctaagaataaggacaaagagcagcaacacagctcttctgaacagagaggtgcgagacagctacaccctcatcatccaagccacagagaagaccttggagttggaagctttgacccgtgtggtggtccacatcctggaccagaatgacctgaagcctctcttctctccaccttcgtacagagtcaccatctctgaggacatgcccctgaagagccccatctgcaaggtgactgccacagatgctgatctaggccagaatgctgagttctattatgcctttaacacaaggtcagagatgtttgccatccatcccaccagcggtgtggtcactgtggctgggaagcttaacgtcacctggcgaggaaagcatgagctccaggtgctagctgtggaccgcatgcggaaaatctctgagggcaatgggtttggcagcctggctgcacttgtggttcatgtggagcctgccctcaggaagcccccagccattgcttcggtggtggtgactccaccagacagcaatgatggtaccacctatgccactgtactggtcgatgcaaatagctcaggagctgaagtggagtcagtggaagttgttggtggtgaccctggaaagcacttcaaagccatcaagtcttatgcccggagcaatgagttcagtttggtgtctgtcaaagacatcaactggatggagtaccttcatgggttcaacctcagcctccaggccaggagtgggagcggcccttatttttattcccagatcaggggctttcacctaccaccttccaaactgtcttccctcaaattcgagaaggctgtttacagagtgcagcttagtgagttttcccctcctggcagccgcgtggtgatggtgagagtcaccccagccttccccaacctgcagtatgttctaaagccatcttcagagaatgtaggatttaaacttaatgctcgaactgggttgatcaccaccacaaagctcatggacttccacgacagagcccactatcagctacacatcagaacctcaccgggccaggcctccaccgtggtggtcattgacattgtggactgcaacaaccatgcccccctcttcaacaggtcttcctatgatggtaccttggatgagaacatccctccaggcaccagtgttttggctgtgactgccactgaccgggatcatggggaaaatggatatgtcacctattccattgctggaccaaaagctttgccattttctattgacccctacctggggatcatctccacctccaaacccatggactatgaactcatgaaaagaatttataccttccgggtaagagcatcagactggggatccccttttcgccgggagaaggaagtgtccatttttcttcagctcaggaacttgaatgacaaccagcctatgtttgaagaagtcaactgtacagggtctatccgccaagactggccagtagggaaatcgataatgactatgtcagccatagatgtggatgagcttcagaacctaaaatacgagattgtatcaggcaatgaactagagtattttgatctaaatcatttctccggagtgatatccctcaaacgcccttttatcaatcttactgctggtcaacccaccagttattccctgaagattacagcctcagatggcaaaaactatgcctcacccacaactttgaatattactgtggtgaaggaccctcattttgaagttcctgtaacatgtgataaaacaggggtattgacacaattcacaaagactatcctccactttattgggcttcagaaccaggagtccagtgatgaggaattcacttctttaagcacatatcagattaatcattacaccccacagtttgaggaccacttcccccaatccattgatgtccttgagagtgtccctatcaacacccccttggcccgcctagcagccactgaccctgatgctggttttaatggcaaactggtctatgtgattgcagatggcaatgaggagggctgctttgacatagagctggagacagggctgctcactgtagctgctcccttggactatgaagccaccaatttctacatcctcaatgtaacagtatatgacctgggcacaccccagaagtcctcctggaagctgctgacagtgaatgtgaaagactggaatgacaacgcacccagatttcctcccggtgggtaccagttaaccatctcggaggacacagaagttggaaccacaattgcagagctgacaaccaaagatgctgactcggaagacaatggcagggttcgctacaccctgctaagtcccacagagaagttctccctccaccctctcactggggaactggttgttacaggacacctggaccgcgaatcagagcctcggtacatactcaaggtggaggccagggatcagcccagcaaaggccaccagctcttctctgtcactgacctgataatcacattggaggatgtcaacgacaactctccccagtgcatcacagaacacaacaggctgaaggttccagaggacctgccccccgggactgtcttgacatttctggatgcctctgatcctgacctgggccccgcaggtgaagtgcgatatgttctgatggatggcgcccatgggaccttccgggtggacctgatgacaggggcgctcattctggagagagagctggactttgagaggcgagctgggtacaatctgagcctgtgggccagtgatggtgggaggcccctagcccgcaggactctctgccatgtggaggtgatcgtcctggatgtgaatgagaatctccaccctccccactttgcctccttcgtgcaccagggccaggtgcaggagaacagcccctcgggaactcaggtgattgtagtggctgcccaggacgatgacagtggcttggatggggagctccagtacttcctgcgtgctggcactggactcgcagccttcagcatcaaccaagatacaggaatgattcagactctggcacccctggaccgagaatttgcatcttactactggttgacggtattagcagtggacaggggttctgtgcccctctcttctgtaactgaagtctacatcgaggttacggatgccaatgacaacccaccccagatgtcccaagctgtgttctacccctccatccaggaggatgctcccgtgggcacctctgtgcttcaactggatgcctgggacccagactccagctccaaagggaagctgaccttcaacatcaccagtgggaactacatgggattctttatgattcaccctgttacaggtctcctatctacagcccagcagctggacagagagaacaaggatgaacacatcctggaggtgactgtgctggacaatggggaaccctcactgaagtccacctccagggtggtggtaggcatcttggacgtcaatgacaatccacctatattctcccacaagctcttcaatgtccgccttccagagaggctgagccctgtgtcccctgggcctgtgtacaggctggtggcttcagacctggatgagggtcttaatggcagagtcacctacagtatcgaggacagcgatgaggaggccttcagtatcgacctggtcacaggtgtggtttcatccagcagcacttttacagctggagagtacaacatcctaacgatcaaggcaacagacagtgggcagccaccactctcagccagtgtccggctacacattgagtggatcccttggccccggccgtcctccatccctctggcctttgatgagacctactacagctttacggtcatggagacggaccctgtgaaccacatggtgggggtcatcagcgtagagggcagacccggactcttctggttcaacatctcaggtggggataaggacatggactttgacattgagaagaccacaggcagcatcgtcattgccaggcctcttgataccaggagaaggtcgaactataacttgactgttgaggtgacagatgggtcccgcaccattgccacacaggtccacatcttcatgattgccaacattaaccaccatcggccccagtttctggaaactcgttatgaagtcagagttccccaggacaccgtgccaggggtagagctcctgcgagtccaggccatagatcaagacaagggcaaaagcctcatctataccatacatggcagccaagacccaggaagtgccagcctcttccagctggacccaagcagtggtgtcctggtaacggtgggaaaattggacctcggctcggggccctcccagcacacactgacagtcatggtccgagaccaggaaatacctatcaagaggaacttcgtgtgggtgaccattcatgtggaggatggaaacctccacccaccccgcttcactcagctccattatgaggcaagtgttcctgacaccatagcccccggcacagagctgctgcaggtccgagccatggatgctgaccggggagtcaatgctgaggtccactactccctcctgaaagggaacagcgaaggtttcttcaacatcaatgccctgctaggcatcattactctagctcaaaagcttgatcaggcaaatcatgccccacatactctgacagtgaaggcagaagatcaaggctccccacaatggcatgacctggctacagtgatcattcatgtctatccctcagataggagtgcccccatcttttcaaaatctgagtactttgtagagatccctgaatcaatccctgttggttccccaatcctccttgtctctgctatgagcccctctgaagttacctatgagttaagagagggaaataaggatggagtcttctctatgaactcatattctggccttatttccacccagaagaaattggaccatgagaaaatctcgtcttaccagctgaaaatccgaggcagcaatatggcaggtgcatttactgatgtcatggtggtggttgacataattgatgaaaatgacaatgctcctatgttcttaaagtcaacttttgtgggccaaattagtgaagcagctccactgtatagcatgatcatggataaaaacaacaacccctttgtgattcatgcctctgacagtgacaaagaagctaattccttgttggtctataaaattttggagccggaggccttgaagtttttcaaaattgatcccagcatgggaaccctaaccattgtatcagagatggattatgagagcatgccctctttccaattctgtgtctatgtccatgaccaaggaagccctgtattatttgcacccagacctgcccaagtcatcattcatgtcagagatgtgaatgattcccctcccagattctcagaacagatatatgaggtagcaatagtcgggcctatccatccaggcatggagcttctcatggtgcgggccagcgatgaagactcagaagtcaattatagcatcaaaactggcaatgctgatgaagctgttaccatccatcctgtcactggtagcatatctgtgctgaatcctgctttcctgggactctctcggaagctcaccatcagggcttctgatggcttgtatcaagacactgcgctggtaaaaatttctttgacccaagtgcttgacaaaagcttgcagtttgatcaggatgtctactgggcagctgtgaaggagaacttgcaggacagaaaggcactggtgattcttggtgcccagggcaatcatttgaatgacaccctttcctactttctcttgaatggcacagatatgtttcatatggtccagtcagcaggtgtgttgcagacaagaggtgtggcgtttgaccgggagcagcaggacactcatgagttggcagtggaagtgagggacaatcggacacctcagcgggtggctcagggtttggtcagagtctctattgaggatgtcaatgacaatccccccaaatttaagcatctgccctattacacaatcatccaagatggcacagagccaggggatgtcctctttcaggtatctgccactgatgaggacttggggacaaatggggctgttacatatgaatttgcagaagattacacatatttccgaattgacccctatcttggggacatatcactcaagaaaccctttgattatcaagctttaaataaatatcacctcaaagtcattgctcgggatggaggaacgccatccctccagagtgaggaagaggtacttgtcactgtgagaaataaatccaacccactgtttcagagtccttattacaaagtcagagtacctgaaaatatcaccctctataccccaattctccacacccaggcccggagtccagagggactccggctcatctacaacattgtggaggaagaacccttgatgctgttcaccactgacttcaagactggtgtcctaacagtaacagggcctttggactatgagtccaagaccaaacatgtgttcacagtcagagccacggatacagctctggggtcattttctgaagccacagtggaagtcctagtggaggatgtcaatgataaccctcccactttttcccaattggtctataccacttccatctcagaaggcttgcctgctcagacccctgtgatccaactgttggcttctgaccaggactcagggcggaaccgtgacgtctcttatcagattgtggaggatggctcagatgtttccaagttcttccagatcaatgggagcacaggggagatgtccacagttcaagaactggattatgaagcccaacaacactttcatgtgaaagtcagggccatggataaaggagatcccccactcactggtgaaacccttgtggttgtcaatgtgtctgatatcaatgacaaccccccagagttcagacaacctcaatatgaagccaatgtcagtgaactggcaacctgtggacacctggttcttaaagtccaggctattgaccctgacagcagagacacctcccgcctggagtacctgattctttctggcaatcaggacaggcacttcttcattaacagctcatcgggaataatttctatgttcaacctttgcaaaaagcacctggactcttcttacaatttgagggtaggtgcttctgatggagtcttccgagcaactgtgcctgtgtacatcaacactacaaatgccaacaagtacagcccagagttccagcagcacctttatgaggcagaattagcagagaatgcaatggttggaaccaaggtgattgatttgctagccatagacaaagatagtggtccctatggcactatagattatactatcatcaataaactagcaagtgagaagttctccataaaccccaatggccagattgccactctgcagaaactggatcgggaaaattcaacagagagagtcattgctattaaggtcatggctcgggatggaggaggaagagtagccttctgcacggtgaagatcatcctcacagatgaaaatgacaaccccccacagttcaaagcatctgagtacacagtatccattcaatccaatgtcagtaaagactctccggttatccaggtgttggcctatgatgcagatgaaggtcagaacgcagatgtcacctactcagtgaacccagaggacctagttaaagatgtcattgaaattaacccagtcactggtgtggtcaaggtgaaagacagcctggtgggattggaaaatcagacccttgacttcttcatcaaagcccaagatggaggccctcctcactggaactctctggtgccagtacgacttcaggtggttcctaaaaaagtatccttaccgaaattttctgaacctttgtatactttctctgcacctgaagaccttccagaggggtctgaaattgggattgttaaagcagtggcagctcaagatccagtcatctacagtctagtgcggggcactacacctgagagcaacaaggatggtgtcttctccctagacccagacacaggggtcataaaggtgaggaagcccatggaccacgaatccaccaaattgtaccagattgatgtgatggcacattgccttcagaacactgatgtggtgtccttggtctctgtcaacatccaagtgggagacgtcaatgacaataggcctgtatttgaggctgatccatataaggctgtcctcactgagaatatgccagtggggacctcagtcattcaagtgactgccattgacaaggacactgggagagatggccaggtgagctacaggctgtctgcagaccctggtagcaatgtccatgagctctttgccattgacagtgagagtggttggatcaccacactccaggaacttgactgtgagacctgccagacttatcattttcatgtggtggcctatgaccacggacagaccatccagctatcctctcaggccctggttcaggtctccattacagatgagaatgacaatgctccccgatttgcttctgaagagtacagaggatctgtggttgagaacagtgagcctggcgaactggtggcgactctaaagaccctggatgctgacatttctgagcagaacaggcaggtcacctgctacatcacagagggagaccccctgggccagtttggcatcagccaagttggagatgagtggaggatttcctcaaggaagaccctggaccgcgagcatacagccaagtacttgctcagagtcacagcatctgatggcaagttccaggcttcggtcactgtggagatctttgtcctggacgtcaatgataacagcccacagtgttcacagcttctctatactggcaaggttcatgaagatgtatttccaggacacttcattttgaaggtttctgccacagacttggacactgataccaatgctcagatcacatattctctgcatggccctggggcgcatgaattcaagctggatcctcatacaggggagctgaccacactcactgccctagaccgagaaaggaaggatgtgttcaaccttgttgccaaggcgacggatggaggtggccgatcgtgccaggcagacatcaccctccatgtggaggatgtgaatgacaatgccccgcggttcttccccagccactgtgctgtggctgtcttcgacaacaccacagtgaagacccctgtggctgtagtatttgcccgggatcccgaccaaggcgccaatgcccaggtggtttactctctgccggattcagccgaaggccacttttccatcgacgccaccacgggggtgatccgcctggaaaagccgctgcaggtcaggccccaggcaccactggagctcacggtccgtgcctctgacctgggcaccccaataccgctgtccacgctgggcaccgtcacagtctcggtggtgggcctagaagactacctgcccgtgttcctgaacaccgagcacagcgtgcaggtgcccgaggacgccccacctggcacggaggtgctgcagctggccaccctcactcgcccgggcgcagagaagaccggctaccgcgtggtcagcgggaacgagcaaggcaggttccgcctggatgctcgcacagggatcctgtatgtcaacgcaagcctggactttgagacaagccccaagtacttcctgtccattgagtgcagccggaagagctcctcttccctcagtgacgtgaccacagtcatggtcaacatcactgatgtcaatgaacaccggccccaattcccccaagatccatatagcacaagggtcttagagaatgcccttgtgggtgacgtcatcctcacggtatcagcgactgatgaagatggacccctaaatagtgacattacctatagcctcataggagggaaccagcttgggcacttcaccattcaccccaaaaagggggagctacaggtggccaaggccctggaccgggaacaggcctctagttattccctgaagctccgagccacagacagtgggcagcctccactgcatgaggacacagacatcgctatccaagtggctgatgtcaatgataacccaccgagattcttccagctcaactacagcaccactgtccaggagaactcccccattggcagcaaagtcctgcagctgatcctgagtgacccagattctccagagaatggccccccctactcgtttcgaatcaccaaggggaacaacggctctgccttccgagtgaccccggatggatggctggtgactgctgagggcctaagcaggagggctcaggaatggtatcagcttcagatccaggcgtcagacagtggcatccctcccctctcgtctttgacgtctgtccgtgtccatgtcacagagcagagccactatgcaccttctgctctcccactggagatcttcatcactgttggagaggatgagttccagggtggcatggtgggtaagatccatgccacagaccgagacccccaggacacgctgacctatagcctggcagaagaggagaccctgggcaggcacttctcagtgggtgcgcctgatggcaagattatcgccgcccagggcctgcctcgtggccactactcgttcaacgtcacggtcagcgatgggaccttcaccacgactgctggggtccatgtgtacgtgtggcatgtggggcaggaggctctgcagcaggccatgtggatgggcttctaccagctcacccccgaggagctggtgagtgaccactggcggaacctgcagaggttcctcagccataagctggacatcaaacgggctaacattcacttggccagcctccagcctgcagaggccgtggctggtgtggatgtgctcctggtctttgaggggcattctggaaccttctacgagtttcaggagctagcatccatcatcactcactcagccaaggagatggagcattcagtgggggttcagatgcggtcagctatgcccatggtgccctgccaggggccaacctgccagggtcaaatctgccataacacagtgcatctggaccccaaggttgggcccacgtacagcaccgccaggctcagcatcctaaccccgcggcaccacctgcagaggagctgctcctgcaatggtactgctacaaggttcagtggtcagagctatgtgcggtacagggccccagcggctcggaactggcacatccatttctatctgaaaacactccagccacaggccattcttctattcaccaatgaaacagcgtccgtctccctgaagTATATTTTTGGAGATTTTAGCCCTGATGAATTCAATCAATTCTTTGTGACTCCTCGATCTTCAGTTGAGCTTCCTCCATACAGTGGAACAGTTCTGTGTGGCACACAGGCTGTGGATAAACTACCTGATGGACAAGAATATCAGAGAATTGAGTTTGGTGTCGATGAAGTCATTGAACCCAGTGACACTTTGCCGAGAACCCCCAGCTACAGTATTTCAAGCACACTGAACCCTCAGGCCCCTGAATTTATTCTCGGTTGTACAGCTTCCAAAATAACCCCTGATGGTATCACTAAAGAAGCAAGCTATGGCTCCATCGACTGCCAGTACCCAGGCTCTGCCCTCGCTTTGGATGGAAGTTCTAATGTGGAGGCGGAAGTTTTGGAAAATGATGGTGTCTCAGGTGGTCTTGGACAAAGGGAGCGTAAAAAGAAGAAAAAGCGGCCACCTGGATATTACAGCTATTTGAAAGATGGTGGCGATGATAGTATCTCCACAGAAGCCCTGGTCAATGGCCATGCCAATTCAGCAGTCCCGAACAGTGTCAGTGCAGAGGATGCAGAATTTATGGGTGACATGCCCCCGTCAGTTACGCCCAGGACTTGTAACAGCCCCCAGAACTCCACAGACTCTGTCAGTGACATTGTGCCTGACAGTCCTTTCCCCGGAGCACTCGGCAGTGACACCAGGACTGCAGGGCAGCCAGAGGGGGGCCCCGGGGCTGATTTTGGTCAGTCCTGCTTCCCTGCAGAGGCTGGCAGAGACACCCTGTCAAGGACAGCTGGGGCTCAGCCCTGCGTTGGTACCGATACTACTGAAAACCTTGGAGTTGCTAATGGACAAATACTTGAATCCTCGGGTGAGGGCACAGCTACCAACGGGGTGGAGTTGCACACCACGGAAAGCATAGACTTGGACCCAACCAAACCCGAGAGTGCATCACCTCCTGCTGACGGCACGGGCTCTGCATCAGGCACCCTTCCTGTCAGCCAGCCCAAGTCCTGGGCCAGCCTCTTTCATGATTCTAAGCCCTCTTCCTCCTCGCCGGTGGCCTATGTGGAAACTAAGTATTCCCCTCCCGCCATATCTCCCCTGGTTTCTGAAAAGCAGGTTGAAGTCAAAGAAGGGCTTGTTCCGGTTTCAGAGGATCCTGTAGCCATAAAGATTGCAGAGTTGCTGGAGAATGTAACCCTAATCCATAAACCAGTGTCGTTGCAACCCCGTGGGCTGATCAATAAAGGGAACTGGTGCTACATTAATGCTACACTGCAGGCATTGGTTGCTTGCCCGCCGATGTACCACCTGATGAAGTTCATTCCTCTGTATTCCAAAGTGCAAAGGCCTTGTACGTCAACACCCATGATAGACAGCTTTGTTCGGCTAATGAATGAGTTCACTAATATGCCAGTACCTCCAAAACCCCGACAAGCTCTTGGAGATAAAATCGTGAGGGATATTCGCCCTGGAGCTGCCTTTGAGCCCACATATATTTACAGACTCCTGACAGTTAACAAGTCAAGCCTGTCTGAAAAGGGTCGACAAGAAGATGCTGAGGAATACTTAGGCTTCATTCTAAATGGACTTCATGAGGAAATGTTGAACCTAAAGAAGCTTCTCTCACCAAGTAATGAAAAACTTACGATTTCCAACGGCCCCAAAAACCACTCGGTCAATGAAGAAGAGCAGGAAGAACAAGGTGAAGGAAGCGAGGATGAATGGGAACAAGTGGGCCCCCGGAACAAGACTTCCGTCACCCGCCAGGCGGATTTTGTTCAGACTCCAATCACCGGCATTTTTGGTGGACACATCAGGTCTGTGGTTTACCAGCAGAGTTCAAAAGAATCTGCCACTTTGCAGCCATTTTTCACGTTGCAGTTGGATATCCAGTCAGACAAGATACGCACAGTCCAGGATGCACTGGAGAGCTTGGTGGCAAGAGAATCTGTCCAAGGTTATACCACAAAAACCAAACAAGAGGTTGAGATAAGTCGAAGAGTGACTCTGGAAAAACTCCCTCCTGTCCTCGTGCTGCACCTGAAACGATTCGTTTATGAGAAGACTGGTGGGTGCCAGAAGCTTATCAAAAATATTGAATATCCTGTGGACTTGGAAATTAGTAAAGAACTGCTTTCTCCAGGGGTTAAAAATAAGAATTTTAAATGCCACCGAACCTATCGGCTCTTTGCAGTGGTCTACCATCACGGCAACAGTGCGACGGGCGGCCATTACACTACAGACGTCTTCCAGATCGGTCTGAATGGCTGGCTGCGCATCGATGACCAGACAGTCAAGGTGATCAACCAGTACCAGGTGGTGAAACCAACTGCTGAACGCACAGCCTACCTCCTGTATTACCGCCGAGTGGACCTGCTGTAA MTIALLGFAIFLLHCATCEKPLEGILSSSAWHFTHSHYNATIYENSSPKTYVESFEKMGIYLAEPQWAVRYRIISGDVANVFKTEEYVVGNFCFLRIRTKSSNTALLNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPLKSPICKVTATDADLGQNAEFYYAFNTRSEMFAIHPTSGVVTVAGKLNVTWRGKHELQVLAVDRMRKISEGNGFGSLAALVVHVEPALRKPPAIASVVVTPPDSNDGTTYATVLVDANSSGAEVESVEVVGGDPGKHFKAIKSYARSNEFSLVSVKDINWMEYLHGFNLSLQARSGSGPYFYSQIRGFHLPPSKLSSLKFEKAVYRVQLSEFSPPGSRVVMVRVTPAFPNLQYVLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHIRTSPGQASTVVVIDIVDCNNHAPLFNRSSYDGTLDENIPPGTSVLAVTATDRDHGENGYVTYSIAGPKALPFSIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFEEVNCTGSIRQDWPVGKSIMTMSAIDVDELQNLKYEIVSGNELEYFDLNHFSGVISLKRPFINLTAGQPTSYSLKITASDGKNYASPTTLNITVVKDPHFEVPVTCDKTGVLTQFTKTILHFIGLQNQESSDEEFTSLSTYQINHYTPQFEDHFPQSIDVLESVPINTPLARLAATDPDAGFNGKLVYVIADGNEEGCFDIELETGLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTISEDTEVGTTIAELTTKDADSEDNGRVRYTLLSPTEKFSLHPLTGELVVTGHLDRESEPRYILKVEARDQPSKGHQLFSVTDLIITLEDVNDNSPQCITEHNRLKVPEDLPPGTVLTFLDASDPDLGPAGEVRYVLMDGAHGTFRVDLMTGALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQGQVQENSPSGTQVIVVAAQDDDSGLDGELQYFLRAGTGLAAFSINQDTGMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSIQEDAPVGTSVLQLDAWDPDSSSKGKLTFNITSGNYMGFFMIHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSHKLFNVRLPERLSPVSPGPVYRLVASDLDEGLNGRVTYSIEDSDEEAFSIDLVTGVVSSSSTFTAGEYNILTIKATDSGQPPLSASVRLHIEWIPWPRPSSIPLAFDETYYSFTVMETDPVNHMVGVISVEGRPGLFWFNISGGDKDMDFDIEKTTGSIVIARPLDTRRRSNYNLTVEVTDGSRTIATQVHIFMIANINHHRPQFLETRYEVRVPQDTVPGVELLRVQAIDQDKGKSLIYTIHGSQDPGSASLFQLDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQEIPIKRNFVWVTIHVEDGNLHPPRFTQLHYEASVPDTIAPGTELLQVRAMDADRGVNAEVHYSLLKGNSEGFFNINALLGIITLAQKLDQANHAPHTLTVKAEDQGSPQWHDLATVIIHVYPSDRSAPIFSKSEYFVEIPESIPVGSPILLVSAMSPSEVTYELREGNKDGVFSMNSYSGLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISEAAPLYSMIMDKNNNPFVIHASDSDKEANSLLVYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVIIHVRDVNDSPPRFSEQIYEVAIVGPIHPGMELLMVRASDEDSEVNYSIKTGNADEAVTIHPVTGSISVLNPAFLGLSRKLTIRASDGLYQDTALVKISLTQVLDKSLQFDQDVYWAAVKENLQDRKALVILGAQGNHLNDTLSYFLLNGTDMFHMVQSAGVLQTRGVAFDREQQDTHELAVEVRDNRTPQRVAQGLVRVSIEDVNDNPPKFKHLPYYTIIQDGTEPGDVLFQVSATDEDLGTNGAVTYEFAEDYTYFRIDPYLGDISLKKPFDYQALNKYHLKVIARDGGTPSLQSEEEVLVTVRNKSNPLFQSPYYKVRVPENITLYTPILHTQARSPEGLRLIYNIVEEEPLMLFTTDFKTGVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSISEGLPAQTPVIQLLASDQDSGRNRDVSYQIVEDGSDVSKFFQINGSTGEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANVSELATCGHLVLKVQAIDPDSRDTSRLEYLILSGNQDRHFFINSSSGIISMFNLCKKHLDSSYNLRVGASDGVFRATVPVYINTTNANKYSPEFQQHLYEAELAENAMVGTKVIDLLAIDKDSGPYGTIDYTIINKLASEKFSINPNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTVSIQSNVSKDSPVIQVLAYDADEGQNADVTYSVNPEDLVKDVIEINPVTGVVKVKDSLVGLENQTLDFFIKAQDGGPPHWNSLVPVRLQVVPKKVSLPKFSEPLYTFSAPEDLPEGSEIGIVKAVAAQDPVIYSLVRGTTPESNKDGVFSLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEADPYKAVLTENMPVGTSVIQVTAIDKDTGRDGQVSYRLSADPGSNVHELFAIDSESGWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDENDNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNRQVTCYITEGDPLGQFGISQVGDEWRISSRKTLDREHTAKYLLRVTASDGKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFPGHFILKVSATDLDTDTNAQITYSLHGPGAHEFKLDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRFFPSHCAVAVFDNTTVKTPVAVVFARDPDQGANAQVVYSLPDSAEGHFSIDATTGVIRLEKPLQVRPQAPLELTVRASDLGTPIPLSTLGTVTVSVVGLEDYLPVFLNTEHSVQVPEDAPPGTEVLQLATLTRPGAEKTGYRVVSGNEQGRFRLDARTGILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRVLENALVGDVILTVSATDEDGPLNSDITYSLIGGNQLGHFTIHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLNYSTTVQENSPIGSKVLQLILSDPDSPENGPPYSFRITKGNNGSAFRVTPDGWLVTAEGLSRRAQEWYQLQIQASDSGIPPLSSLTSVRVHVTEQSHYAPSALPLEIFITVGEDEFQGGMVGKIHATDRDPQDTLTYSLAEEETLGRHFSVGAPDGKIIAAQGLPRGHYSFNVTVSDGTFTTTAGVHVYVWHVGQEALQQAMWMGFYQLTPEELVSDHWRNLQRFLSHKLDIKRANIHLASLQPAEAVAGVDVLLVFEGHSGTFYEFQELASIITHSAKEMEHSVGVQMRSAMPMVPCQGPTCQGQICHNTVHLDPKVGPTYSTARLSILTPRHHLQRSCSCNGTATRFSGQSYVRYRAPAARNWHIHFYLKTLQPQAILLFTNETASVSLKYIFGDFSPDEFNQFFVTPRSSVELPPYSGTVLCGTQAVDKLPDGQEYQRIEFGVDEVIEPSDTLPRTPSYSISSTLNPQAPEFILGCTASKITPDGITKEASYGSIDCQYPGSALALDGSSNVEAEVLENDGVSGGLGQRERKKKKKRPPGYYSYLKDGGDDSISTEALVNGHANSAVPNSVSAEDAEFMGDMPPSVTPRTCNSPQNSTDSVSDIVPDSPFPGALGSDTRTAGQPEGGPGADFGQSCFPAEAGRDTLSRTAGAQPCVGTDTTENLGVANGQILESSGEGTATNGVELHTTESIDLDPTKPESASPPADGTGSASGTLPVSQPKSWASLFHDSKPSSSSPVAYVETKYSPPAISPLVSEKQVEVKEGLVPVSEDPVAIKIAELLENVTLIHKPVSLQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNKSSLSEKGRQEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSEDEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDALESLVARESVQGYTTKTKQEVEISRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLIKNIEYPVDLEISKELLSPGVKNKNFKCHRTYRLFAVVYHHGNSATGGHYTTDVFQIGLNGWLRIDDQTVKVINQYQVVKPTAERTAYLLYYRRVDLL* FALSE TRUE hsa-mir-6499 chr5:151522087-151522148:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32661 WNK1::ERC1 ENSG00000060237.19::ENSG00000082805.21 KYSE30 SRR8616039 SRR8652077 OESOPHAGUS carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2026 TRUE 3722 TRUE 1413 WNK1 ENSG00000060237.19 protein_coding + + chr12:752579-911452:+ chr12:871348:+ chr12:861745-1020618:+ chr12:980514:+ ERC1 ENSG00000082805.21 protein_coding + + chr12:990509-1495933:+ chr12:1444562:+ chr12:1099675-1605099:+ chr12:1553728:+ chr12:876012 chr12:1414013 NA NA chr12:985178 chr12:1523179 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PK_Tyr_Ser-Thr|222-475|4.4e-45^Pkinase|226-479|2.2e-58^Pkinase_fungal|329-396|2.9e-05^OSR1_C|500-563|1.4e-29^Pkinase_fungal|548-592|0.36^Pkinase_fungal|1289-1369|1.4^OSR1_C|1397-1423|4.6e-06 none ["ERC1:Oncogene"];["Klijn_CellLines","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.08Mb];NEIGHBORS[79057] 3 22 3 6.6 ONLY_REF_SPLICE YES_LDAS 0.1088 GT 1.8323 AG 1.6729 ENST00000340908.9 1-3717 ENST00000543086.7 2941-3267 chr12|+|[0]753566-754324[2]|[0]813642-813814[1]|[2]827042-827262[0]|[1]830003-830160[2]|[0]857161-857249[1]|[2]859245-859464[2]|[0]861013-861343[0]|[1]862083-862270[2]|[0]865110-865364[2]|[0]867866-869104[2]|[0]871265-871348[2]<==>chr12|+|[0]1444562-1444750[2]|[0]1490093-1490230[2] atgtctggcggcgccgcagagaagcagagcagcactcccggttccctgttcctctcgccgccggctcctgcccccaagaatggctccagctccgattcctccgtgggggagaaactgggagccgcggccgccgacgctgtgaccggcaggaccgaggagtacaggcgccgccgccacactatggacaaggacagccgtggggcggccgcgaccactaccaccactgagcaccgcttcttccgccggagcgtcatctgtgactccaatgccactgcactggagcttcccggccttcctctttccctgccccagcccagcatccccgcggctgtcccgcagagtgctccaccggagccccaccgggaagagaccgtgaccgccaccgccacttcccaggtagcccagcagcctccagccgctgccgcccctggggaacaggccgtcgcgggccctgccccctcgactgtccccagcagtaccagcaaagaccgcccagtgtcccagcctagccttgtggggagcaaagaggagccgccgccggcgagaagtggcagcggcggcggcagcgccaaggagccacaggaggaacggagccagcagcaggatgatatcgaagagctggagaccaaggccgtgggaatgtctaacgatggccgctttctcaagtttgacatcgaaatcggcagaggctcctttaagacggtctacaaaggtctggacactgaaaccaccgtggaagtcgcctggtgtgaactgcaggatcgaaaattaacaaagtctgagaggcagagatttaaagaagaagctgaaatgttaaaaggtcttcagcatcccaatattgttagattttatgattcctgggaatccacagtaaaaggaaagaagtgcattgttttggtgactgaacttatgacgtctggaacacttaaaacgtatctgaaaaggtttaaagtgatgaagatcaaagttctaagaagctggtgccgtcagatccttaaaggtcttcagtttcttcatactcgaactccacctatcattcaccgcgatcttaaatgtgacaacatctttatcaccggccctactggctcagtcaagattggagacctcggtctggcaaccctgaagcgggcttcttttgccaagagtgtgataggtaccccagagttcatggcccctgagatgtatgaggagaaatatgatgaatccgttgacgtttatgcttttgggatgtgcatgcttgagatggctacatctgaatatccttactcggagtgccaaaatgctgcacagatctaccgtcgcgtgaccagtggggtgaagccagccagttttgacaaagtagcaattcctgaagtgaaggaaattattgaaggatgcatacgacaaaacaaagatgaaagatattccatcaaagaccttttgaaccatgccttcttccaagaggaaacaggagtacgggtagaattagcagaagaagatgatggagaaaaaatagccataaaattatggctacgtattgaagatattaagaaattaaagggaaaatacaaagataatgaagctattgagttttcttttgatttagagagagatgtcccagaagatgttgcacaagaaatggtagagtctgggtatgtctgtgaaggtgatcacaagaccatggctaaagctatcaaagacagagtatcattaattaagaggaaacgagagcagcggcagttggtacgggaggagcaagaaaaaaaaaagcaggaagagagcagtctcaaacagcaggtagaacaatccagtgcttcccagacaggaatcaagcagctcccttctgctagcaccggcatacctactgcttctaccacttcagcttcagtttctacacaagtagaacctgaagaacctgaggcagatcaacatcaacaactacagtaccagcaacccagtatatctgtgttatctgatgggacggttgacagtggtcagggatcctctgtcttcacagaatctcgagtgagcagccaacagacagtttcatatggttcccaacatgaacaggcacattctacaggcacagtcccagggcatataccttctactgtccaagcacagtctcagccccatggggtatatccaccctcaagtgtgcctcgtcgtggccgtagcatgtcggtttgtgttcccatctttctgctgttgcctctgtgtcccgcatctctcccagtgctcttccaccccaccgccagtactgtctgcacctctttctccttccctcctccggactgccccgaggaaacttttgccgaaaagctttctaaagcattggagagtgtcctgcctatgcactctgcctctcagcgcaagcaccgacgctccagcctgccttccctctttgtcagtactcctcagtccatggcgcatccgtgtggggggaccccaacatacccagaatcacagatatttttcccaactattcatgaacgtccagtttctttttcaccacctcccacctgcccaccgaaagtagccatttcccagcggcgtaagagcacctccttcctggaagcccaaactcaccacttccaacccctgctgaggactgttggccaaagtcttcttccacctggtggcagcccaactaactggacaccagaggccgtagttatgttgggtactacagccagtagagtaactggagagtcatgtgagatacaggtccatcctatgtttgaaccatctcaagtttacagtgactatagacctggactagtacttccagaagaagctcactattttattcctcaggaagcagtgtatgtagctggggtacattaccaggcccgggtggcagaacagtatgagggcattccatacaactcatcagtactgtcaagtcctatgaaacagatacctgaacagaagccagtacaagggggccctacttcaagttctgtctttgaatttccatctggacaggctttcctggtaggacaccttcagaatctaagattagattctggattgggtccgggatctcccctctctagtatttctgcacctatcagtacagatgctacacgtttgaaatttcaccctgtctttgttcctcattctgcgcctgctgtgttaactcataacaatgagagcagaagcaactgtgtatttgaatttcatgttcacacaccaagctcctcttcaggagaaggaggtggaattttacctcagcgtgtttaccgaaatcggcaggttgcagtggacttgaatcaagaagaactgcctcctcaatcagttggattacatggctacttgcagcctgtgactgaagaaaagcataattaccatgccccagaattgaccgtttctgtggtagagcctatcggacagaactggccaataggaagcccagaatattccagtgattcctcacaaatcacttcttcagaccccagtgattttcagtcacctccccctacagggggagcagctgcaccttttggctctgacgtctcaatgccctttatccatctgcctcagacagtgttacaagaatccccacttttcttctgtttcccccaaggaaccacatctcagcaggtcttaactgcctcattttcttcaggaggatctgcacttcatccacaggcacaggggcagagccagggtcagccatcctcaagtagcttaacaggggtttcatcttcccaacccatacaacatcctcagcagATCATCCAGCCCCTCTTAGAACTTGACCAAAATAGAAGTAAATTAAAGTTGTACATTGGACACCTGACAACCCTCTGCCATGACCGAGACCCCCTGATCCTCCGTGGACTCACTCCACCAGCTTCCTATAACTTGGACGATGACCAGGCGGCTTGGGAGAATGAGCTGCAGAAGATGACCCGGGGGCAGCTTCAGGATGAGTTAGAGAAAGGTGAACGGGACAATGCAGAACTGCAGGAGTTTGCCAACGCCATTCTTCAGCAGATAGCAGACCATTGTCCCGACATCCTAGAGCAAGTGGTCAACGCCCTGGAAGAGTCCTCTTGA MSGGAAEKQSSTPGSLFLSPPAPAPKNGSSSDSSVGEKLGAAAADAVTGRTEEYRRRRHTMDKDSRGAAATTTTTEHRFFRRSVICDSNATALELPGLPLSLPQPSIPAAVPQSAPPEPHREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVSQPSLVGSKEEPPPARSGSGGGSAKEPQEERSQQQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKSVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEETGVRVELAEEDDGEKIAIKLWLRIEDIKKLKGKYKDNEAIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRKREQRQLVREEQEKKKQEESSLKQQVEQSSASQTGIKQLPSASTGIPTASTTSASVSTQVEPEEPEADQHQQLQYQQPSISVLSDGTVDSGQGSSVFTESRVSSQQTVSYGSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSVPRRGRSMSVCVPIFLLLPLCPASLPVLFHPTASTVCTSFSFPPPDCPEETFAEKLSKALESVLPMHSASQRKHRRSSLPSLFVSTPQSMAHPCGGTPTYPESQIFFPTIHERPVSFSPPPTCPPKVAISQRRKSTSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQVHPMFEPSQVYSDYRPGLVLPEEAHYFIPQEAVYVAGVHYQARVAEQYEGIPYNSSVLSSPMKQIPEQKPVQGGPTSSSVFEFPSGQAFLVGHLQNLRLDSGLGPGSPLSSISAPISTDATRLKFHPVFVPHSAPAVLTHNNESRSNCVFEFHVHTPSSSSGEGGGILPQRVYRNRQVAVDLNQEELPPQSVGLHGYLQPVTEEKHNYHAPELTVSVVEPIGQNWPIGSPEYSSDSSQITSSDPSDFQSPPPTGGAAAPFGSDVSMPFIHLPQTVLQESPLFFCFPQGTTSQQVLTASFSSGGSALHPQAQGQSQGQPSSSSLTGVSSSQPIQHPQQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGLTPPASYNLDDDQAAWENELQKMTRGQLQDELEKGERDNAELQEFANAILQQIADHCPDILEQVVNALEESS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Serine/threonine-protein kinase WNK1 Other WNK Q9H4A3 FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE ELKS/RAB6-interacting/CAST family member 1 1 papillary thyroid, Spitzoid tumour epithelial fusion translocation 32665 LAMA3::S1PR2 ENSG00000053747.17::ENSG00000267534.4 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23921585:+ chr18:21269417-21536186:+ chr18:21501549:+ S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10224947:- chr19:10332109-10342007:- chr19:10335623:- chr18:23923040 chr19:10227501 NA NA chr18:21503004 chr19:10338177 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr19] 24 27 24 27 ONLY_REF_SPLICE YES_LDAS 0.6545 GT 1.8323 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32672 ANKRD36B::ZNF479 ENSG00000196912.13::ENSG00000185177.14 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2041 FALSE NA FALSE NA ANKRD36B ENSG00000196912.13 protein_coding - - chr2:97492663-97589877:- chr2:97553168:- chr2:98109127-98206340:- chr2:98169631:- ZNF479 ENSG00000185177.14 protein_coding - - chr7:57117676-57139864:- chr7:57121152:- chr7:57185383-57207571:- chr7:57188859:- chr2:97552072,chr2:97552074 chr7:57121904,chr7:57121903 NA NA chr2:98168535,chr2:98168537 chr7:57189611,chr7:57189610 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ank_4|23-73|1.1e-11^Ank_2|24-116|1.5e-21^Ank|24-50|0.066^Ank_3|24-47|0.016^Ank_5|24-40|0.42^Ank_5|45-93|5.6e-10^Ank|54-83|1.8e-08^Ank_3|54-80|2.4e-06^Ank|86-116|2e-07^Ank_4|87-139|1.1e-14^Ank_3|87-114|0.016^Ank_2|105-182|8.5e-17^Ank_5|105-145|1.2e-07^Ank_3|118-146|2.9e-06^Ank|119-147|5.7e-08^Ank_2|123-215|1.6e-19^DUF6363|124-142|0.3^Ank_4|153-205|1.4e-08^Ank_3|153-180|0.0001^Ank_5|153-192|0.00028^Ank|155-182|9.3e-07^Ank_5|171-225|4.4e-05^Ank_2|185-238|2.3e-06^Ank|185-215|9.9e-06^Ank_3|185-211|0.0012^Ank_4|195-227|0.15^CCDC144C|393-456|0.1^CCDC144C|705-754|0.53^BORCS7|806-861|0.002^CCDC144C|833-905|0.16^CCDC144C|949-1239|1.1e-107^Ank_2|994-1011|3.6^BORCS7|1098-1128|0.14^DUF6363|1130-1159|0.00021^BORCS7-PARTIAL|1254-1273~|1.3e-05^CCDC144C-PARTIAL|1266-1273~|0.022 zf-H2C2_2-PARTIAL|~263-279|4.9e-12^Zn-ribbon_8-PARTIAL|~263-280|1.8e-05^zf-RING_7|263-275|0.04^DUF3741-PARTIAL|~263-275|1.3^C1_4-PARTIAL|~263-278|0.03^HEPN_AbiV-PARTIAL|~263-272|0.52^TBPIP_C-PARTIAL|~263-264|0.015^zf-H2C2_5-PARTIAL|~263-264|1.1e-05^MRP-S23-PARTIAL|~263-268|2.4^HVO_2753_ZBP-PARTIAL|~263-275|0.0018^GAGA|265-288|0.091^zf-trcl|267-278|0.037^zf-C2H2|269-291|5.3e-09^zf-C2H2_4|269-291|1.5e-05^zf-C2H2_6|269-291|0.00039^zf_UBZ|269-281|0.0039^zf-C2H2_jaz|269-289|0.047^DUF6434|269-283|3.7^TBPIP_C|269-291|0.83^CpXC|269-287|0.099^zf-H2C2_5|269-274|2.4^Desulfoferrod_N|269-276|0.17^DNA_RNApol_7kD|269-279|0.11^XPA_N|270-281|0.0059^zf-C2H2_11|270-290|0.23^zinc_ribbon_4|270-279|0.2^C1_4|271-320|0.0048^zf_C2H2_13|271-277|1.3^HNH|271-287|0.099^MRP-S23|272-296|3.2^DUF6434|280-312|0.37^BolA|282-319|1.1^zf-H2C2_2|283-307|3.5e-12^DUF3741|285-303|0.83^zf-RING_7|289-303|0.036^HVO_2753_ZBP|295-303|0.024^zf-trcl|296-306|0.13^zf-C2H2|297-319|8.4e-09^zf-C2H2_4|297-319|1.7e-05^zf-C2H2_6|297-319|0.0014^zf_UBZ|297-315|0.0018^zf-C2H2_jaz|297-317|0.003^zf-C2H2_11|297-318|0.0078^Zn-ribbon_8|297-332|0.00058^TBPIP_C|297-319|0.0065^CpXC|297-313|0.1^zf-H2C2_5|297-302|0.5^Desulfoferrod_N|297-305|0.019^DNA_RNApol_7kD|297-309|0.045^XPA_N|298-309|0.0017^C1_4|299-347|0.1^zf_C2H2_13|299-318|0.017^HEPN_AbiV|299-315|0.57^zinc_ribbon_4|299-334|0.023^HNH|299-315|0.055^BHD_1|309-326|5.7^zf-H2C2_2|312-335|4.2e-09^DUF3741|313-330|0.75^zf-RING_7|316-331|0.034^BolA|320-347|1.3^GAGA|321-348|0.097^zf-trcl|323-338|0.024^DNA_RNApol_7kD|323-331|0.16^zf-C2H2_4|325-347|0.00041^zf-C2H2_11|325-346|3.8e-05^MRP-S23|325-352|0.15^zf-C2H2|326-347|2.6e-07^zf-C2H2_6|326-347|0.0013^XPA_N|326-337|0.012^Zn-ribbon_8|326-335|0.19^TBPIP_C|326-348|0.24^CpXC|326-344|0.21^zinc_ribbon_4|326-334|0.18^zf-H2C2_5|326-347|0.00029^HVO_2753_ZBP|326-359|0.0038^Desulfoferrod_N|326-332|2.4^zf_UBZ|327-335|0.12^zf-C2H2_jaz|327-345|0.028^C1_4|327-376|0.00021^zf_C2H2_13|327-335|0.31^HEPN_AbiV|327-342|2^HNH|327-343|0.039^zf-H2C2_2|339-363|7.4e-11^DUF3741|343-362|2.2^BolA|343-375|0.14^zf-RING_7|344-359|0.094^GAGA|349-375|0.2^zf-trcl|351-362|0.065^CpXC|352-372|0.025^zf-C2H2|353-375|2.2e-08^zf-C2H2_4|353-375|3.8e-05^zf-C2H2_6|353-375|0.012^zf_UBZ|353-365|0.0052^zf-C2H2_jaz|353-369|4.3^Zn-ribbon_8|353-392|6.4e-06^DUF6434|353-370|0.088^TBPIP_C|353-376|0.19^zf-H2C2_5|353-375|0.027^Desulfoferrod_N|353-360|0.23^DNA_RNApol_7kD|353-366|0.02^zf-C2H2_11|354-374|0.00021^HEPN_AbiV|354-383|0.57^zinc_ribbon_4|354-390|0.0089^XPA_N|355-365|0.014^zf_C2H2_13|355-371|0.098^HNH|355-371|0.28^MRP-S23|356-380|0.59^zf-H2C2_2|367-391|8.2e-12^DUF3741|367-386|2^zf-RING_7|372-387|0.0055^GAGA|377-400|0.51^HVO_2753_ZBP|378-387|0.015^zf-trcl|379-390|0.022^C1_4|380-404|0.022^zf-C2H2|381-403|3.2e-08^zf-C2H2_4|381-403|6.3e-05^zf-C2H2_6|381-403|0.0034^zf_UBZ|381-390|0.0083^zf-C2H2_jaz|381-400|0.51^TBPIP_C|381-390|1.6^CpXC|381-401|0.011^zf-H2C2_5|381-386|2.1^Desulfoferrod_N|381-388|0.28^DNA_RNApol_7kD|381-391|0.041^XPA_N|382-393|0.018^zf-C2H2_11|382-400|1^zf_C2H2_13|383-388|2.6^DUF6434|383-394|6.1^HNH|383-399|0.0048^zf-H2C2_2|396-419|3.9e-11^zf-RING_7|400-415|0.023^DUF3741|400-414|6.2^DUF6434|405-424|2.4^HVO_2753_ZBP|407-415|0.024^zf-trcl|408-418|0.21^zf-C2H2|409-431|1.4e-08^zf-C2H2_4|409-431|1e-05^zf-C2H2_6|409-431|0.00047^zf_UBZ|409-427|0.0018^zf-C2H2_jaz|409-429|0.0038^zf-C2H2_11|409-430|0.024^Zn-ribbon_8|409-424|0.00066^TBPIP_C|409-431|0.0082^CpXC|409-425|0.14^zf-H2C2_5|409-414|0.08^Desulfoferrod_N|409-417|0.014^DNA_RNApol_7kD|409-422|0.033^XPA_N|410-421|0.0097^C1_4|411-459|0.011^zf_C2H2_13|411-430|0.014^HEPN_AbiV|411-427|0.82^zinc_ribbon_4|411-422|0.032^MRP-S23|411-436|7.9^HNH|411-427|0.05^DUF6434|420-451|0.28^zf-H2C2_2|424-447|1.6e-11^DUF3741|425-443|0.48^BolA|425-459|2.6^zf-RING_7|428-443|0.021^HVO_2753_ZBP|435-443|0.021^zf-trcl|436-446|0.12^zf-C2H2|437-459|1.9e-08^zf-C2H2_4|437-459|2.4e-05^zf-C2H2_6|437-459|0.0017^zf_UBZ|437-455|0.0022^zf-C2H2_jaz|437-457|0.0039^zf-C2H2_11|437-458|0.016^Zn-ribbon_8|437-452|0.0011^TBPIP_C|437-459|0.011^CpXC|437-453|0.1^zf-H2C2_5|437-442|0.34^Desulfoferrod_N|437-444|0.038^DNA_RNApol_7kD|437-450|0.016^XPA_N|438-449|0.0021^C1_4|439-487|0.044^zf_C2H2_13|439-458|0.0067^HEPN_AbiV|439-455|0.44^zinc_ribbon_4|439-451|0.043^HNH|439-455|0.055^DUF6434|447-482|0.0014^zf-H2C2_2|452-476|2.6e-11^DUF3741|453-473|0.34^zf-RING_7|456-471|0.01^GAGA|461-486|1.6^HVO_2753_ZBP|463-471|0.064^zf-trcl|464-474|0.12^CpXC|464-484|0.36^zf-C2H2|465-487|3.2e-06^zf-C2H2_4|465-487|7.4e-06^zf-C2H2_6|465-487|0.0054^zf_UBZ|465-483|0.00075^zf-C2H2_jaz|465-485|0.0023^Zn-ribbon_8|465-500|0.06^TBPIP_C|465-491|0.16^HVO_2753_ZBP|465-498|8.4^Desulfoferrod_N|465-472|0.65^DNA_RNApol_7kD|465-475|0.24^XPA_N|466-477|0.0043^zf-C2H2_11|466-486|0.16^zinc_ribbon_4|466-485|0.56^C1_4|467-515|0.081^zf_C2H2_13|467-484|0.068^HEPN_AbiV|467-507|0.0063^HNH|467-477|1.2^MRP-S23|468-492|7.1^BolA|479-515|0.033^zf-H2C2_2|480-503|1.4e-11^DUF3741|480-502|0.042^zf-RING_7|484-498|0.075^zf-trcl|491-506|0.019^zf-C2H2|493-515|0.00014^zf-C2H2_4|493-515|0.023^zf-C2H2_6|493-515|0.055^zf_UBZ|493-508|0.06^zf-C2H2_jaz|493-511|2.5^zf-C2H2_11|493-514|0.16^Zn-ribbon_8|493-503|0.059^CpXC|493-509|0.63^zf-H2C2_5|493-511|0.0059^Desulfoferrod_N|493-498|0.59^DNA_RNApol_7kD|493-502|0.41^XPA_N|494-502|0.039^HNH|495-515|0.41^BHD_1|505-520|1.3^zf-H2C2_2|507-524|8.8e-07 ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr7] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1283 GT 1.7968 AG 1.8323 ENST00000359901.9 1-1273 ENST00000319636.10 263-1575 chr2|-|[0]97553168-97553240[0]|[2]97553343-97553371[1]|[0]97555060-97555132[0]|[2]97555226-97555254[1]|[0]97556937-97557009[0]|[2]97557104-97557132[1]|[0]97558799-97558871[0]|[2]97558966-97558994[1]|[0]97560665-97560737[0]|[2]97560832-97560860[1]|[0]97576379-97576446[2]|[1]97578906-97579043[2]|[1]97580462-97580568[0]|[2]97584944-97585117[0]|[2]97585284-97585398[2]|[1]97589525-97589685[0]<==>chr7|-|[2]57119840-57121152[1] atggagcgcttgtgctcggatggcttcgcatttccccattactacattaaaccgtatcatctgaagaggatccacagagctgtcttacgtggtaatctggagaaactgaagtaccttctgctcacgtattatgacgccaataagagagacaggaaggaaaggactgccctacatttggcctgtgccactggccaaccggaaatggtacatctcctggtgtccagaagatgtgagcttaacctctgcgaccgtgaagacaggacacctctgatcaaggctgtacaactgaggcaggaggcttgtgcaactcttctgctgcaaaatggcgccgatccaaatattacggatgtctttggaaggactgctctgcactacgctgtgtataatgaagatacatccatgatagaaaaacttctttcacatggtacaaatattgaagaatgcagcaagaatgaatatcagccactgttacttgctgtgagtcgaagaaaagtgaaaatggtggaatttttattaaagaaaaaagcaaatgtaaatgccattgattatcttggcagatcagccctcatacttgctgttactcttggagaaaaagatatagtcattcttcttctgcagcacaatattgatgtgttttctcgagatgtgtatggaaagcttgcagaagattatgccagtgaggctgagaatagagtcatttttgatctaatttatgaatacaaaagaaagagatatgaagatcttcctataaatagcaatccagtgtctcctcagaaacaacgagctgagaaggctacaagtgacgacaaagattctgtttcaaatatagccacagaaataaaggagggacctatatctgggacagtgtcttctcagaaacaaccagctgagaaggctacaagtgacgagaaagattctgtttcaaatatagccacagaaataaaggagggacaacaatctgggacagtgtctcctcagaaacaatcggcccagaaggttatatttaaaaagaaagtttctcttttgaatattgccacaagaataatgggcggtgggaaatctggaacagtgtcttctcagaaacaaccagcctcaaagactgcaagtgacaagacagattctgctttgaatacagctacagaaataaaggatggactacaatgtgggacagtgtcttctcagaaacaacaagccttgaaggctacaactgacgaggaaggttctgtttctaatatagccacagaaataaaggatggagaaaaatctgggacagTTACGCGTTCCCATTTCACCCAAGACCTTCAGCCAGAGCAGGGCATCAAAGATTCACTCCAAAAAGTAATACCAAGAACATATGGAAAATGTGGACATGAGAAATTACAATTTAAAAAATGCTGTAAAAGTGTGGGTGAATATGAGGTGCACAAGGGAGGTTATAGTGAAGTTAACCAATGTTTGTCAACTACCCAAAACAAAATATTTCAGACTCATAAATATGTCAAAGTCTTTGGTAAATTTTCAAATTCCAATAGAGATAAAACAAGATATACTGGAAATAAACATTTCAAATGTAACAAATATGGCAAATCATTTTGCATGCTTTCACACCTAAATCAACATCAGGTAATTCATACTAGGGAGAAGTCCTACAAATGCAAAGAATGTGGCAAATCCTTTAACTGCTCCTCAAACCATACTACACATAAAATAATTCATACTGGAGAGAAACCATATAGATGTGAGGAATGTGGCAAAGCCTTTAGCTGGTCTGCAAACCTTACTAGACATAAGAGAACTCATACTGGAGAGAAACCCTACACGTGTGAAGAATGTGGCCAAGCCTTTAGGCGCTCCTCAGCACTTACTAACCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGCGTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAAACCCTGCAGGTGTGAGGAATGTGGCAAAGCCTTTAGCTGGTCCTCAAACCTTACTAGACATAAGAGAATTCATACTAGAGAGAAACCCTATGCCTGTGAAGAATGTGGCCAAGCCTTTAGCTTATCCTCGAACCTTATGAGACATAGGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCCAAGACTTTAGGCGCTCCTCAGCACTTACTATCCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAGTGTGGCAAAGTCTTTAGCTTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAGACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGCTTATCCTCAACCCTCACTGACCACAAGAGAATTCATACTGGAGAGAGACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAATTGCTCCTCAACCCTTATGCAACATAAGAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGAGCAAGCTTTTAAGTGGCATTCAAGTCTTGCTAAACATAAGATAATTCACACTGGAGAGAAACCCTACAAATGTGAATAA MERLCSDGFAFPHYYIKPYHLKRIHRAVLRGNLEKLKYLLLTYYDANKRDRKERTALHLACATGQPEMVHLLVSRRCELNLCDREDRTPLIKAVQLRQEACATLLLQNGADPNITDVFGRTALHYAVYNEDTSMIEKLLSHGTNIEECSKNEYQPLLLAVSRRKVKMVEFLLKKKANVNAIDYLGRSALILAVTLGEKDIVILLLQHNIDVFSRDVYGKLAEDYASEAENRVIFDLIYEYKRKRYEDLPINSNPVSPQKQRAEKATSDDKDSVSNIATEIKEGPISGTVSSQKQPAEKATSDEKDSVSNIATEIKEGQQSGTVSPQKQSAQKVIFKKKVSLLNIATRIMGGGKSGTVSSQKQPASKTASDKTDSALNTATEIKDGLQCGTVSSQKQQALKATTDEEGSVSNIATEIKDGEKSGTVTRSHFTQDLQPEQGIKDSLQKVIPRTYGKCGHEKLQFKKCCKSVGEYEVHKGGYSEVNQCLSTTQNKIFQTHKYVKVFGKFSNSNRDKTRYTGNKHFKCNKYGKSFCMLSHLNQHQVIHTREKSYKCKECGKSFNCSSNHTTHKIIHTGEKPYRCEECGKAFSWSANLTRHKRTHTGEKPYTCEECGQAFRRSSALTNHKRIHTGERPYKCEECGKAFSVSSTLTDHKRIHTGEKPCRCEECGKAFSWSSNLTRHKRIHTREKPYACEECGQAFSLSSNLMRHRRIHTGEKPYTCEECGQDFRRSSALTIHKRIHTGERPYKCEECGKVFSLSSTLTDHKRIHTGERPYKCEECGKAFSLSSTLTDHKRIHTGERPYTCEECGKAFNCSSTLMQHKRIHTGEKPYKCEECEQAFKWHSSLAKHKIIHTGEKPYKCE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE zinc finger protein 479 2 lung cancer, bladder carcinoma, prostate carcinoma epithelial missense 32673 C11orf80::MAPKAPK5 ENSG00000173715.19::ENSG00000089022.15 HSC3 SRR8616041 SRR8652118 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2040 FALSE NA FALSE NA C11orf80 ENSG00000173715.19 protein_coding + + chr11:66744451-66843516:+ chr11:66759096:+ chr11:66511922-66610987:+ chr11:66526567:+ MAPKAPK5 ENSG00000089022.15 protein_coding + + chr12:111842013-111902222:+ chr12:111880447:+ chr12:112279817-112340026:+ chr12:112318251:+ chr11:66778855 chr12:111879419 NA NA chr11:66546326 chr12:112317223 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4554-PARTIAL|171-376~|4.3e-283 Pkinase-PARTIAL|~133-155|2.5e-30^PK_Tyr_Ser-Thr-PARTIAL|~133-147|3.3e-06^PK_Tyr_Ser-Thr|260-279|0.026 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr12] 5 4 5 4 ONLY_REF_SPLICE YES_LDAS 0.1155 GT 1.8295 AG 1.8892 ENST00000525908.6 1-376 ENST00000549875.1 133-974 chr11|+|[0]66744890-66744919[2]|[0]66748379-66748517[0]|[1]66756353-66756505[0]|[1]66759043-66759096[0]<==>chr12|+|[0]111880447-111880527[2]|[0]111883581-111883768[1]|[2]111885916-111886036[2]|[0]111888488-111888618[1]|[2]111888885-111889006[0]|[1]111890040-111890144[0]|[1]111892967-111893060[1] atggaggggacggccgtggccgtgttcgagattttgagatttttaataattcactggaagtgtgacatagatgtatcaaagggagcattgctagaagggcagctagtgatttccatagaaggattaaattctaagcaccaggcaaatgctcttcattgtgtaacaactagatggagtctcactctgttacccaggccggagtgcagtggcgcagtctcggctcactgcaacctccacctcccaggttcaagtgattctcatgcctcagtcccccgagtagctgggattacagatgcccaccaccatgcctggctaattatggttgcttctgcaggaagcctttttggtggcatggtcctcaagaagttcctaaaagGTACTGGAGGCGCAAAGAAGGCATCAGAAGGAGAAATCTGGCATCATACCTACCTCACCGACGCCCTACACTTACAACAAGAGCTGTGACTTGTGGTCCCTAGGGGTGATTATCTATGTGATGCTGTGCGGATACCCTCCTTTTTACTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAAGAAAGATCATGACAGGCAGTTTTGAGTTCCCAGAGGAAGAGTGGAGTCAGATCTCAGAGATGGCCAAAGATGTTGTGAGGAAGCTCCTGAAGGTCAAACCGGAGGAGAGACTCACCATCGAGGGAGTGCTGGACCACCCCTGGCTCAATTCCACCGAGGCCCTGGATAATGTGCTGCCTTCTGCTCAGCTGATGATGGACAAGGCAGTGGTTGCAGGAATCCAGCAGGCTCACGCGGAACAGTTGGCCAACATGAGAATCCAGGATCTGAAAGTCAGCCTCAAACCCCTGCACTCAGTGAACAACCCCATTCTGCGGAAGAGGAAGTTACTTGGCACCAAGCCAAAGGACAGTGTCTATATCCACGACCATGAGAATGGAGCCGAGGATTCCAATGTTGCCTTGGAAAAACTCCGAGATGTGATTGCTCAGTGTATTCTCCCCCAGGCTGGTAAAGGAGAGAATGAAGATGAGAAACTGAATGAAGTAATGCAGGAGGCTTGGAAGTATAACCGGGAATGCAAACTCCTAAGAGATACTCTGCAGAGCTTCAGCTGGAATGGTCGTGGATTCACAGATAAAGTAGATCGACTAAAACTGGCAGAAATTGTGAAGCAGGTGATAGAAGAGCAAACCACGTCCCACGAATCCCAATA MEGTAVAVFEILRFLIIHWKCDIDVSKGALLEGQLVISIEGLNSKHQANALHCVTTRWSLTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGITDAHHHAWLIMVASAGSLFGGMVLKKFLKGTGGAKKASEGEIWHHTYLTDALHLQQEL*LVVPRGDYLCDAVRIPSFLLQTPQPDYPKGYAKKDHDRQF*VPRGRVESDLRDGQRCCEEAPEGQTGGETHHRGSAGPPLAQFHRGPG*CAAFCSADDGQGSGCRNPAGSRGTVGQHENPGSESQPQTPALSEQPHSAEEEVTWHQAKGQCLYPRP*EWSRGFQCCLGKTPRCDCSVYSPPGW*RRE*R*ETE*SNAGGLEV*PGMQTPKRYSAELQLEWSWIHR*SRSTKTGRNCEAGDRRANHVPRIPI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE MAP kinase-activated protein kinase 5 CAMK MAPKAPK MK5 Q8IW41 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32677 PACSIN2::TTLL1 ENSG00000100266.19::ENSG00000100271.17 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 2046 FALSE NA FALSE NA PACSIN2 ENSG00000100266.19 protein_coding - - chr22:42835412-43015149:- chr22:43015021:- chr22:43231418-43411155:- chr22:43411027:- TTLL1 ENSG00000100271.17 protein_coding - - chr22:43039516-43089419:- chr22:43046573:- chr22:43435522-43485425:- chr22:43442579:- chr22:43013351 chr22:43051805 NA NA chr22:43409357 chr22:43447811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PACSIN2:Oncogene"];["DEEPEST2019","Larsson_TCGA","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.02Mb];LOCAL_REARRANGEMENT:-:[24499] 218 124 218 124 ONLY_REF_SPLICE YES_LDAS 1.9656 GT 1.7232 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma LUNG,LUNG,UTERUS no_match 43411027|43411027|43411027,43308027|43411027,43411027|43411027|43389626 TRUE|TRUE|TRUE,FALSE|TRUE,TRUE|TRUE|FALSE 43447893|43435911|43442579,43435911|43435911,43447893|43435911|43447893 FALSE|FALSE|TRUE,FALSE|FALSE,FALSE|FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY 5UTR-CDS,Out-of-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32678 FLOT1::LINC00243 ENSG00000137312.15::ENSG00000214894.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FLOT1 ENSG00000137312.15 protein_coding - - chr6:30727709-30742732:- chr6:30740158:- chr6:30695486-30710509:- chr6:30707935:- LINC00243 ENSG00000214894.7 lncRNA - - chr6:30798211-30830659:- chr6:30798772:- chr6:30765988-30798436:- chr6:30766549:- chr6:30736741,chr6:30736755 chr6:30812318,chr6:30812329 NA NA chr6:30704518,chr6:30704532 chr6:30780095,chr6:30780106 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.06Mb];LOCAL_REARRANGEMENT:-:[55921] 179 190 179 190 ONLY_REF_SPLICE YES_LDAS 2.1208 GT 1.9656 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32679 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 2047 TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127187785:- chr8:128084939-128239786:- chr8:128200030:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.09Mb];LOCAL_REARRANGEMENT:-:[86595] 80 171 80 148.72 ONLY_REF_SPLICE YES_LDAS 1.3145 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32680 ST14::SLC12A2-DT ENSG00000149418.11::ENSG00000245937.10 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ST14 ENSG00000149418.11 protein_coding + + chr11:130159782-130210362:+ chr11:130200137:+ chr11:130029677-130080257:+ chr11:130070032:+ SLC12A2-DT ENSG00000245937.10 lncRNA - - chr5:127939152-128083172:- chr5:127966928:- chr5:127274844-127418864:- chr5:127302620:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 74 47 74 47 ONLY_REF_SPLICE YES_LDAS 0.6954 GT 1.9086 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32681 CASC19::CASC8 ENSG00000254166.4::ENSG00000246228.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 2048 TRUE 3742 TRUE 1424 CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127218810:- chr8:128084939-128239786:- chr8:128231055:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127174766,chr8:127174770 chr8:127292937,chr8:127292938 NA NA chr8:128187011,chr8:128187015 chr8:128305182,chr8:128305183 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.09Mb];LOCAL_REARRANGEMENT:-:[86595] 62 73 62 18.03 ONLY_REF_SPLICE YES_LDAS 0.4599 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32682 MARS1::INHBC ENSG00000166986.15::ENSG00000175189.4 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE TRUE 2049 FALSE NA FALSE NA MARS1 ENSG00000166986.15 protein_coding + + chr12:57475445-57517569:+ chr12:57490644:+ chr12:57869228-57911352:+ chr12:57884427:+ INHBC ENSG00000175189.4 protein_coding + + chr12:57434784-57452062:+ chr12:57449277:+ chr12:57828567-57845845:+ chr12:57843060:+ chr12:57491117 chr12:57449192 NA NA chr12:57884900 chr12:57842975 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GST_N_5|1-74|5.3e-34^GST_N_2|45-69|1.6e-05^GST_N|46-68|0.00014^GST_C|111-180|1.6e-09^GST_C_2|111-174|1.2e-08^GST_C_3|115-174|1.1e-05^GST_C_3|219-244|4.8^GST_C_2|231-247|5.3^tRNA-synt_1g|266-544|2.1e-108^tRNA-synt_1|268-507|7e-08^GST_C_2|282-303|1^DZR_2|384-408|0.16^C1_1|386-410|0.016^zinc-ribbons_6|388-429|0.0052^DZR_2|404-438|0.00066^C1_1|416-439|0.0023^GST_N_5|422-451|8.1^GST_C_2|453-465|5.6 TGF_beta-PARTIAL|~314-351|2e-34 none 51 34 51 34 ONLY_REF_SPLICE YES_LDAS 0.4885 GT 1.9086 AG 1.6729 ENST00000537638.6 1-770 ENST00000309668.3 314-1059 chr12|+|[0]57488091-57488199[0]|[1]57489019-57489109[1]|[2]57489267-57489345[2]|[0]57489424-57489558[2]|[0]57489896-57489971[0]|[1]57490207-57490379[2]|[0]57490538-57490644[1]<==>chr12|+|[1]57449277-57450022[2] atgagactgttcgtgagtgatggcgtcccgggttgcttgccggtgctggccgccgccgggagagcccggggcagagcagaggtgctcatcagcactgtaggcccggaagattgtgtggtcccgttcctgacccggcctaaggtccctgtcttgcagctggatagcggcaactacctcttctccactagtgcaatctgccgatatttttttttgttatctggctgggagcaagatgacctcactaaccagtggctggaatgggaagcgacagagctgcagccagctttgtctgctgccctgtactatttagtggtccaaggcaagaagggggaagatgttcttggttcagtgcggagagccctgactcacattgaccacagcttgagtcgtcagaactgtcctttcctggctggggagacagaatctctagccgacattgttttgtggggagccctatacccattactgcaagatcccgcctacctccctgaggagctgagtgccctgcacagctggttccagacactgagtacccaggaaccatgtcagcgagctgcagagactgtactgaaacagcaaggtgtcctggctctccggccttacctccaaaagcagccccagcccagccccgctgagggaagggctgtcaccaatgagcctgaggaggaggagctggctaccctatctgaggaggagattgctatggctgttactgcttgggagaagggcctagaaagtttgcccccgctgcggccccagcagaatccagtGCCTCTCCACCATCAACCAGACTCGTCTTGATTTTCACTTCTCCTCTGATAGAACTGCTGGTGACAGGGAGGTCCAGCAGGCCAGTCTCATGTTCTTTGTGCAGCTCCCTTCCAATACCACTTGGACCTTGAAAGTGAGAGTCCTTGTGCTGGGTCCACATAATACCAACCTCACCTTGGCTACTCAGTACCTGCTGGAGGTGGATGCCAGTGGCTGGCATCAACTCCCCCTAGGGCCTGAAGCTCAAGCTGCCTGCAGCCAGGGGCACCTGACCCTGGAGCTGGTACTTGAAGGCCAGGTAGCCCAGAGCTCAGTCATCCTGGGTGGAGCTGCCCATAGGCCTTTTGTGGCAGCCCGGGTGAGAGTTGGGGGCAAACACCAGATTCACCGACGAGGCATCGACTGCCAAGGAGGGTCCAGGATGTGCTGTCGACAAGAGTTTTTTGTGGACTTCCGTGAGATTGGCTGGCACGACTGGATCATCCAGCCTGAGGGCTACGCCATGAACTTCTGCATAGGGCAGTGCCCACTACACATAGCAGGCATGCCTGGTATTGCTGCCTCCTTTCACACTGCAGTGCTCAATCTTCTCAAGGCCAACACAGCTGCAGGCACCACTGGAGGGGGCTCATGCTGTGTACCCACGGCCCGGCGCCCCCTGTCTCTGCTCTATTATGACAGGGACAGCAACATTGTCAAGACTGACATACCTGACATGGTAGTAGAGGCCTGTGGGTGCAGTTAG MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLFSTSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRALTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQEPCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPVPLHHQPDSS*FSLLL**NCW*QGGPAGQSHVLCAAPFQYHLDLESESPCAGST*YQPHLGYSVPAGGGCQWLASTPPRA*SSSCLQPGAPDPGAGT*RPGSPELSHPGWSCP*AFCGSPGESWGQTPDSPTRHRLPRRVQDVLSTRVFCGLP*DWLARLDHPA*GLRHELLHRAVPTTHSRHAWYCCLLSHCSAQSSQGQHSCRHHWRGLMLCTHGPAPPVSALL*QGQQHCQD*HT*HGSRGLWVQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32692 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128135808:+ chr5:127419458-127525369:+ chr5:127471500:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127875538:+ chr5:127039053-127277199:+ chr5:127211230:+ chr5:128138547,chr5:128166992,chr5:128138547,chr5:128138548 chr5:127849077,chr5:127776811,chr5:127848946,chr5:127849075 NA NA chr5:127474239,chr5:127502684,chr5:127474239,chr5:127474240 chr5:127184769,chr5:127112503,chr5:127184638,chr5:127184767 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AA_permease_N|202-253|1.4e-28^AA_permease|290-792|5.3e-139^AA_permease_2|314-733|3.1e-23^AA_permease_N|794-814|0.11^SLC12|801-1212|1.4e-163^AA_permease_N|1013-1026|0.56 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 17 40 17 29.97 ONLY_REF_SPLICE YES_LDAS 0.2699 GT 1.3383 AG 1.6049 ENST00000262461.7 1-1408 ENST00000514853.5 412-822 chr5|+|[0]128083955-128084710[2]|[0]128112814-128112933[2]|[0]128114212-128114287[0]|[1]128114586-128114681[0]|[1]128131067-128131206[2]|[0]128134165-128134275[2]|[0]128135700-128135808[0]<==>chr5|+|[0]127875538-127875661[0]|[1]127941182-127941468[2] atggagccgcggcccacggcgccctcctccggcgccccgggactggccggggtcggggagacgccgtcagccgctgcgctggccgcagccagggtggaactgcccggcacggctgtgccctcggtgccggaggatgctgcgcccgcgagccgggacggcggcggggtccgcgatgagggccccgcggcggccggggacgggctgggcagacccttggggcccaccccgagccagagccgtttccaggtggacctggtttccgagaacgccgggcgggccgctgctgcggcggcggcggcggcggcggcagcggcggcggctggtgctggggcgggggccaagcagacccccgcggacggggaagccagcggcgagagcgagccggctaaaggcagcgaggaagccaagggccgcttccgcgtgaacttcgtggacccagctgcctcctcgtcggctgaagacagcctgtcagatgctgccggggtcggagtcgacgggcccaacgtgagcttccagaacggcggggacacggtgctgagcgagggcagcagcctgcactccggcggcggcggcggcagtgggcaccaccagcactactattatgatacccacaccaacacctactacctgcgcaccttcggccacaacaccatggacgctgtgcccaggatcgatcactaccggcacacagccgcgcagctgggcgagaagctgctccggcctagcctggcggagctccacgacgagctggaaaaggaaccttttgaggatggctttgcaaatggggaagaaagtactccaaccagagatgctgtggtcacgtatactgcagaaagtaaaggagtcgtgaagtttggctggatcaagggtgtattagtacgttgtatgttaaacatttggggtgtgatgcttttcattagattgtcatggattgtgggtcaagctggaataggtctatcagtccttgtaataatgatggccactgttgtgacaactatcacaggattgtctacttcagcaatagcaactaatggatttgtaagaggaggaggagcatattatttaatatctagaagtctagggccagaatttggtggtgcaattggtctaatcttcgcctttgccaacgctgttgcagttgctatgtatgtggttggatttgcagaaaccgtggtggagttgcttaaggaacattccatacttatgatagatgaaatcaatgatatccgaattattggagccattacagtcgtgattcttttaggtatctcagtagctggaatggagtgggaagcaaaagctcagattgttcttttggtgatcctacttcttgctattggtgatttcgtcataggaacatttatcccactggagagcaagaagccaaaagggttttttggttataaatAAACTAAAGCATGAAAAGAAAGTGAAAAAACTACAGACTGATTTGGCAACAGCTAATGCCATCACAGTTCTGGAACTCAATGAGAAGATAAAGACTCTATATGAAGGAAAGCCAGCCCCTAGAGAAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGGTCTCTGATGAGAATTTGTAG MEPRPTAPSSGAPGLAGVGETPSAAALAAARVELPGTAVPSVPEDAAPASRDGGGVRDEGPAAAGDGLGRPLGPTPSQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAGAKQTPADGEASGESEPAKGSEEAKGRFRVNFVDPAASSSAEDSLSDAAGVGVDGPNVSFQNGGDTVLSEGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELHDELEKEPFEDGFANGEESTPTRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLKEHSILMIDEINDIRIIGAITVVILLGISVAGMEWEAKAQIVLLVILLLAIGDFVIGTFIPLESKKPKGFFGYK*TKA*KESEKTTD*FGNS*CHHSSGTQ*EDKDSI*RKASP*RRQLAGRVLWRSPTCGRR**KN*PDNGTVNPGFPSD*ENYSAERSFGGKGKEDSAAGS*AESPSSPRGQGPSRMFTRSPSFLYS*HPTCGL**EFV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32694 SLC12A2::CCDC192 ENSG00000064651.14::ENSG00000230561.7 HT115 SRR8616044 SRR8652111 LARGE_INTESTINE carcinoma primary star-fusion TRUE TRUE FALSE NA TRUE 3743 TRUE 1425 SLC12A2 ENSG00000064651.14 protein_coding + + chr5:128083766-128189677:+ chr5:128135808:+ chr5:127419458-127525369:+ chr5:127471500:+ CCDC192 ENSG00000230561.7 protein_coding + + chr5:127703361-127941507:+ chr5:127941182:+ chr5:127039053-127277199:+ chr5:127276874:+ chr5:128138547,chr5:128166992,chr5:128138547,chr5:128138548 chr5:127849077,chr5:127776811,chr5:127848946,chr5:127849075 NA NA chr5:127474239,chr5:127502684,chr5:127474239,chr5:127474240 chr5:127184769,chr5:127112503,chr5:127184638,chr5:127184767 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AA_permease_N|202-253|1.4e-28^AA_permease|290-792|5.3e-139^AA_permease_2|314-733|3.1e-23^AA_permease_N|794-814|0.11^SLC12|801-1212|1.4e-163^AA_permease_N|1013-1026|0.56 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 14 29 14 9.48 ONLY_REF_SPLICE YES_LDAS 0.135 GT 1.3383 AG 1.9656 ENST00000262461.7 1-1408 ENST00000514853.5 536-822 chr5|+|[0]128083955-128084710[2]|[0]128112814-128112933[2]|[0]128114212-128114287[0]|[1]128114586-128114681[0]|[1]128131067-128131206[2]|[0]128134165-128134275[2]|[0]128135700-128135808[0]<==>chr5|+|[1]127941182-127941468[2] atggagccgcggcccacggcgccctcctccggcgccccgggactggccggggtcggggagacgccgtcagccgctgcgctggccgcagccagggtggaactgcccggcacggctgtgccctcggtgccggaggatgctgcgcccgcgagccgggacggcggcggggtccgcgatgagggccccgcggcggccggggacgggctgggcagacccttggggcccaccccgagccagagccgtttccaggtggacctggtttccgagaacgccgggcgggccgctgctgcggcggcggcggcggcggcggcagcggcggcggctggtgctggggcgggggccaagcagacccccgcggacggggaagccagcggcgagagcgagccggctaaaggcagcgaggaagccaagggccgcttccgcgtgaacttcgtggacccagctgcctcctcgtcggctgaagacagcctgtcagatgctgccggggtcggagtcgacgggcccaacgtgagcttccagaacggcggggacacggtgctgagcgagggcagcagcctgcactccggcggcggcggcggcagtgggcaccaccagcactactattatgatacccacaccaacacctactacctgcgcaccttcggccacaacaccatggacgctgtgcccaggatcgatcactaccggcacacagccgcgcagctgggcgagaagctgctccggcctagcctggcggagctccacgacgagctggaaaaggaaccttttgaggatggctttgcaaatggggaagaaagtactccaaccagagatgctgtggtcacgtatactgcagaaagtaaaggagtcgtgaagtttggctggatcaagggtgtattagtacgttgtatgttaaacatttggggtgtgatgcttttcattagattgtcatggattgtgggtcaagctggaataggtctatcagtccttgtaataatgatggccactgttgtgacaactatcacaggattgtctacttcagcaatagcaactaatggatttgtaagaggaggaggagcatattatttaatatctagaagtctagggccagaatttggtggtgcaattggtctaatcttcgcctttgccaacgctgttgcagttgctatgtatgtggttggatttgcagaaaccgtggtggagttgcttaaggaacattccatacttatgatagatgaaatcaatgatatccgaattattggagccattacagtcgtgattcttttaggtatctcagtagctggaatggagtgggaagcaaaagctcagattgttcttttggtgatcctacttcttgctattggtgatttcgtcataggaacatttatcccactggagagcaagaagccaaaagggttttttggttataaatAAGACAGCTTGCTGGAAGGGTTCTGTGGAGGTCTCCCACCTGTGGAAGAAGGTGATAGAAAAATTAGCCTGATAATGGAACTGTCAACCCAGGTTTCCCTTCAGACTGAGAGAATTACTCAGCTGAAAGAAGTTTTGGAGGAAAAGGAAAGGAAGATTCAGCAGCTGGAAGCTGAGCGGAGTCCCCATCCTCCCCAAGAGGTCAAGGACCCTCCAGGATGTTTACCAGAAGCCCCAGTTTTCTCTACTCATGACATCCCACCTGTGGTCTCTGATGAGAATTTGTAG MEPRPTAPSSGAPGLAGVGETPSAAALAAARVELPGTAVPSVPEDAAPASRDGGGVRDEGPAAAGDGLGRPLGPTPSQSRFQVDLVSENAGRAAAAAAAAAAAAAAAGAGAGAKQTPADGEASGESEPAKGSEEAKGRFRVNFVDPAASSSAEDSLSDAAGVGVDGPNVSFQNGGDTVLSEGSSLHSGGGGGSGHHQHYYYDTHTNTYYLRTFGHNTMDAVPRIDHYRHTAAQLGEKLLRPSLAELHDELEKEPFEDGFANGEESTPTRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLKEHSILMIDEINDIRIIGAITVVILLGISVAGMEWEAKAQIVLLVILLLAIGDFVIGTFIPLESKKPKGFFGYK*DSLLEGFCGGLPPVEEGDRKISLIMELSTQVSLQTERITQLKEVLEEKERKIQQLEAERSPHPPQEVKDPPGCLPEAPVFSTHDIPPVVSDENL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32704 VPS13B::LINC00534 ENSG00000132549.20::ENSG00000253394.7 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA VPS13B ENSG00000132549.20 protein_coding + + chr8:99013266-99877580:+ chr8:99143165:+ chr8:100025494-100889808:+ chr8:100155393:+ LINC00534 ENSG00000253394.7 lncRNA + + chr8:90221341-90687863:+ chr8:90539338:+ chr8:91233569-91700091:+ chr8:91551566:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:8.44Mb] 21 16 21 16 ONLY_REF_SPLICE YES_LDAS 0.4142 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32707 SP2-AS1::CDK5RAP3 ENSG00000234494.8::ENSG00000108465.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2056 FALSE NA FALSE NA SP2-AS1 ENSG00000234494.8 lncRNA - - chr17:47897330-47941410:- chr17:47941336:- chr17:45974696-46018776:- chr17:46018702:- CDK5RAP3 ENSG00000108465.15 protein_coding + + chr17:47967810-47981781:+ chr17:47971362:+ chr17:46045176-46059147:+ chr17:46048728:+ chr17:47941049 chr17:47970933 NA NA chr17:46018415 chr17:46048299 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.03Mb];LOCAL_INVERSION:-:+:[26400] 15 0 15 0 ONLY_REF_SPLICE YES_LDAS 0.1679 GT 1.5301 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32710 UBE3C::DNAJB6 ENSG00000009335.19::ENSG00000105993.15 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA UBE3C ENSG00000009335.19 protein_coding + + chr7:157138926-157269370:+ chr7:157170450:+ chr7:156931620-157062064:+ chr7:156963144:+ DNAJB6 ENSG00000105993.15 protein_coding + + chr7:157335381-157417439:+ chr7:157358547:+ chr7:157128075-157210133:+ chr7:157151241:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GUO2018CR_TCGA","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.07Mb];NEIGHBORS[66009] 8 9 8 8.47 ONLY_REF_SPLICE YES_LDAS 0.1844 GT 1.9656 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32714 SCYL1::FRMD8 ENSG00000142186.18::ENSG00000126391.14 HT1376 SRR8616046 SRR8652112 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2054 FALSE NA FALSE NA SCYL1 ENSG00000142186.18 protein_coding + + chr11:65525077-65538704:+ chr11:65536334:+ chr11:65292548-65306175:+ chr11:65303805:+ FRMD8 ENSG00000126391.14 protein_coding + + chr11:65386621-65413525:+ chr11:65393573:+ chr11:65154092-65180996:+ chr11:65161044:+ chr11:65536524 chr11:65391585 NA NA chr11:65303995 chr11:65159056 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase|35-222|4.3e-14^PK_Tyr_Ser-Thr|41-219|4.6e-10^Kinase-like|133-222|4.2e-05^SCD|295-313|7.5^Vac14_Fab1_bd|343-380|0.012^HEAT_EZ|344-366|1.5^PK_Tyr_Ser-Thr|345-382|0.38^DUF3385|345-379|0.00043^HEAT|350-379|0.21^SCD|362-432|0.00059^PDS5|363-455|8.3e-06^Vac14_Fab1_bd|386-425|0.16^HEAT|389-417|0.00062^HEAT_EZ|399-409|8.6^DUF3385|427-457|0.25^HEAT|429-458|0.02^HEAT_EZ|438-455|1.9^HEAT_EZ|494-531|0.0003^PDS5|499-534|0.012^Vac14_Fab1_bd|503-525|0.12^HEAT|507-536|3.2e-06^SCD|517-539|0.33 FERM_M-PARTIAL|~254-272|7.5e-17 ["SCYL1:Oncogene"];["FRMD8:Oncogene"];["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","GUO2018CR_TCGA","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr11:0.11Mb] 6 11 6 11 ONLY_REF_SPLICE YES_LDAS 0.1903 GT 1.6402 AG 1.9086 ENST00000524944.5 1-1651 ENST00000317568.10 254-1395 chr11|+|[0]65525154-65525264[2]|[0]65525574-65525714[2]|[0]65525921-65526043[2]|[0]65526124-65526350[1]|[2]65526783-65526873[2]|[0]65526962-65527117[2]|[0]65530629-65530787[2]|[0]65531576-65531683[2]|[0]65532692-65532805[2]|[0]65535227-65535382[2]|[0]65535953-65536141[2]|[0]65536259-65536334[0]<==>chr11|+|[1]65393573-65393674[0]|[1]65394041-65394099[2]|[0]65394259-65394425[1]|[2]65396799-65397020[1]|[2]65399736-65399859[2]|[0]65400724-65400867[2]|[0]65404864-65405068[0]|[1]65411242-65411360[2] atgtggttctttgcccgggacccggtccgggactttccgttcgagctcatcccggagcccccagagggcggcctgcccgggccctgggccctgcaccgcggccgcaagaaggccacaggcagccccgtgtccatcttcgtctatgatgtgaagcctggcgcggaagagcagacccaggtggccaaagctgccttcaagcgcttcaaaactctacggcaccccaacatcctggcttacatcgatggactggagacagaaaaatgcctccacgtcgtgacagaggctgtgaccccgttgggaatatacctcaaggcgagagtggaggctggtggcctgaaggagctggagatctcctgggggctacaccagatcgtgaaagccctcagcttcctggtcaacgactgcagcctcatccacaacaatgtctgcatggccgccgtgttcgtggaccgagctggcgagtggaagcttgggggcctggactacatgtattcggcccagggcaacggtgggggacctccccgcaaggggatccccgagcttgagcagtatgaccccccggagttggctgacagcagtggcagagtggtcagagagaagtggtcagcagacatgtggcgcttgggctgcctcatttgggaagtcttcaatgggcccctacctcgggcagcagccctacgcaaccctgggaagatccccaaaacgctggtgccccattactgtgagctggtgggagcaaaccccaaggtgcgtcccaacccagcccgcttcctgcagaactgccgggcacctggtggcttcatgagcaaccgctttgtagaaaccaacctcttcctggaggagattcagatcaaagagccagccgagaagcaaaaattcttccaggagctgagcaagagcctggacgcattccctgaggatttctgtcggcacaaggtgctgccccagctgctgaccgccttcgagttcggcaatgctggggccgttgtcctcacgcccctcttcaaggtgggcaagttcctgagcgctgaggagtatcagcagaagatcatccctgtggtggtcaagatgttctcatccactgaccgggccatgcgcatccgcctcctgcagcagatggagcagttcatccagtaccttgacgagccaacagtcaacacccagatcttcccccacgtcgtacatggcttcctggacaccaaccctgccatccgggagcagacggtcaagtccatgctgctcctggccccaaagctgaacgaggccaacctcaatgtggagctgatgaagcactttgcacggctacaggccaaggatgaacagggccccatccgctgcaacaccacagtctgcctgggcaaaatcggctcctacctcagtgctagcaccagacacagggtccttacctctgccttcagccgagccactagggacccgtttgcaccgtcccgggttgcgggtgtcctgggctttgctgccacccacaacctctactcaatgaacgactgtgcccagaagatcctgcctgtgctctgcggtctcactgtagatcctgagaaatccgtgcgagaccaggccttcaaggccattcggagcttcctgtccaaattggagtctgtgtcggaggacccgacccagctggaggaagtggAGGTGCAGCTGAAACCCAAGCACCAGCCCTACAAGCTGGGACGCCAGTGGCCGGAGCTGCTGCTGCGCTTCACCAGTGCCCCAGACGATGACGTGGCCATGGATGAGCCTTTCCTGCAGTTCCGAAGGAACGTGTTCTTCCCAAAGCGGCGGGAGCTCCAGATCCATGACGAGGAGGTCCTGCGGCTGCTCTATGAGGAGGCCAAGGGCAACGTGCTGGCTGCACGGTACCCGTGCGACGTGGAGGACTGCGAGGCTCTGGGCGCCCTGGTGTGCCGCGTGCAGCTTGGGCCCTACCAGCCCGGCCGGCCGGCAGCCTGCGACCTGAGGGAGAAGCTGGACTCCTTCCTCCCTGCCCACCTCTGTAAGCGGGGCCAGAGTCTCTTTGCTGCCCTCCGGGGCCGTGGGGCCAGGGCCGGGCCGGGCGAGCAGGGCCTGCTGAACGCCTACCGCCAGGTGCAGGAGGTCAGCAGCGACGGCGGGTGCGAGGCCGCCCTGGGCACCCACTACCGCGCCTATCTCCTCAAGTGCCACGAGCTGCCGTTTTATGGGTGTGCCTTCTTCCACGGTGAGGTTGACAAGCCGGCCCAAGGCTTTTTGCACCGGGGTGGGCGCAAGCCAGTTTCTGTGGCCATCAGTCTGGAAGGCGTGCACGTCATCGATAGCAGAGAGAAGCATGTCCTGCTGGGCCTGCGCTTCCAGGAGCTGTCGTGGGACCACACCTCCCCCGAGGAGGAGGAGCCCATCTTGTGGCTGGAGTTCGACGGGGACAGCGAGGGCACACCTGTCAACAAGCTCCTCAAGATCTACTCCAAGCAGGCCGAACTGATGAGCAGTCTCATTGAGTACTGCATCGAACTGAGCCAGGCGGCGGAGCCCGCAGGCCCCCAGGACAGTGCGACTGGCTCGCCCTCGGACCCCAGCTCCTCACTGGCTCCTGTTCAGCGCCCCAAGCTGCGGAGGCAGGGCAGTGTGGTGTCCAGCCGGATCCAGCATCTCTCCACCATCGACTACGTGGAGGACGGCAAGGGGATCAGGCGAGTGAAGCCGAAGCGCACCACATCCTTCTTCAGCCGGCAGCTGTCCTTGGGCCAGGGGAGCTACACCGTGGTGCAGCCCGGCGACAGCCTGGAGCAGGGCTGA MWFFARDPVRDFPFELIPEPPEGGLPGPWALHRGRKKATGSPVSIFVYDVKPGAEEQTQVAKAAFKRFKTLRHPNILAYIDGLETEKCLHVVTEAVTPLGIYLKARVEAGGLKELEISWGLHQIVKALSFLVNDCSLIHNNVCMAAVFVDRAGEWKLGGLDYMYSAQGNGGGPPRKGIPELEQYDPPELADSSGRVVREKWSADMWRLGCLIWEVFNGPLPRAAALRNPGKIPKTLVPHYCELVGANPKVRPNPARFLQNCRAPGGFMSNRFVETNLFLEEIQIKEPAEKQKFFQELSKSLDAFPEDFCRHKVLPQLLTAFEFGNAGAVVLTPLFKVGKFLSAEEYQQKIIPVVVKMFSSTDRAMRIRLLQQMEQFIQYLDEPTVNTQIFPHVVHGFLDTNPAIREQTVKSMLLLAPKLNEANLNVELMKHFARLQAKDEQGPIRCNTTVCLGKIGSYLSASTRHRVLTSAFSRATRDPFAPSRVAGVLGFAATHNLYSMNDCAQKILPVLCGLTVDPEKSVRDQAFKAIRSFLSKLESVSEDPTQLEEVEVQLKPKHQPYKLGRQWPELLLRFTSAPDDDVAMDEPFLQFRRNVFFPKRRELQIHDEEVLRLLYEEAKGNVLAARYPCDVEDCEALGALVCRVQLGPYQPGRPAACDLREKLDSFLPAHLCKRGQSLFAALRGRGARAGPGEQGLLNAYRQVQEVSSDGGCEAALGTHYRAYLLKCHELPFYGCAFFHGEVDKPAQGFLHRGGRKPVSVAISLEGVHVIDSREKHVLLGLRFQELSWDHTSPEEEEPILWLEFDGDSEGTPVNKLLKIYSKQAELMSSLIEYCIELSQAAEPAGPQDSATGSPSDPSSSLAPVQRPKLRRQGSVVSSRIQHLSTIDYVEDGKGIRRVKPKRTTSFFSRQLSLGQGSYTVVQPGDSLEQG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE N-terminal kinase-like protein Other SCY1 Q96KG9 FALSE NA NA NA NA NA NA TRUE Breast,Lung,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 65294588 FALSE 65172335 FALSE PARTIALLY In-frame TRUE Lung LUNG no_match 65535382 FALSE 65404864 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32719 CORO7::NMRAL1 ENSG00000262246.6::ENSG00000153406.14 HT144 SRR8616047 SRR8652113 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CORO7 ENSG00000262246.6 protein_coding - - chr16:4354542-4425705:- chr16:4416459:- chr16:4404543-4475706:- chr16:4466460:- NMRAL1 ENSG00000153406.14 protein_coding - - chr16:4461691-4495763:- chr16:4481879:- chr16:4511692-4545764:- chr16:4531880:- chr16:4413634,chr16:4413636 chr16:4485661,chr16:4485660 NA NA chr16:4463635,chr16:4463637 chr16:4535662,chr16:4535661 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.04Mb];LOCAL_REARRANGEMENT:-:[35975] 13 3 13 3 ONLY_REF_SPLICE YES_LDAS 0.2225 GT 1.231 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32730 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 SKMEL24 SRR8616049 SRR8670682 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21818202:+ chr9:21802635-21937650:+ chr9:21818201:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22112320:+ chr9:21994138-22128102:+ chr9:22112319:+ chr9:21827441,chr9:21827442 chr9:22109648,chr9:22109639 NA NA chr9:21827440,chr9:21827441 chr9:22109647,chr9:22109638 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 23 9 23 9 ONLY_REF_SPLICE YES_LDAS 0.2991 GT 1.9656 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32735 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 SKMEL24 SRR8616049 SRR8670682 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96630835,chr5:96630833 chr5:96631662,chr5:96631657 NA NA chr5:95966539,chr5:95966537 chr5:95967366,chr5:95967361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 12 2 12 2 ONLY_REF_SPLICE YES_LDAS 0.1309 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32739 COQ2::LINC00616 ENSG00000173085.15::ENSG00000248307.6 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA COQ2 ENSG00000173085.15 protein_coding - - chr4:83261536-83284914:- chr4:83272087:- chr4:84182689-84206067:- chr4:84193240:- LINC00616 ENSG00000248307.6 lncRNA - - chr4:137978547-138131182:- chr4:138091039:- chr4:138899701-139052336:- chr4:139012193:- chr4:83270320,chr4:83270327 chr4:138094931,chr4:138094935 NA NA chr4:84191473,chr4:84191480 chr4:139016085,chr4:139016089 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:54.74Mb] 28 10 28 9.71 ONLY_REF_SPLICE YES_LDAS 0.2807 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32740 AHCY::ASIP ENSG00000101444.13::ENSG00000101440.10 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2060 FALSE NA FALSE NA AHCY ENSG00000101444.13 protein_coding - - chr20:34280268-34311802:- chr20:34303243:- chr20:32868074-32899608:- chr20:32891049:- ASIP ENSG00000101440.10 protein_coding + + chr20:34194569-34269344:+ chr20:34268991:+ chr20:32782375-32857150:+ chr20:32856797:+ chr20:34298716,chr20:34298724 chr20:34263423,chr20:34263415 NA NA chr20:32886522,chr20:32886530 chr20:32851229,chr20:32851221 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AdoHcyase-PARTIAL|7-28~|1e-74 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.01Mb];LOCAL_INVERSION:-:+:[10924] 26 2 26 2 ONLY_REF_SPLICE YES_LDAS 0.2084 GT 1.9656 AG 1.8892 ENST00000217426.7 1-28 ENST00000568305.5 223-399 chr20|-|[0]34303243-34303270[0]<==>chr20|+|[0]34268991-34269167[2] atgtctgacaaactgccctacaaagtcgAAGGAGGCTTCGATGAAGAAAGTGGTGCGGCCCCGGACCCCCCTATCTGCGCCCTGCGTGGCCACCCGCAACAGCTGCAAGCCGCCGGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGCTTCTTCCGCAGCGCCTGCTCCTGCCGCGTGCTCAGCCTCAACTGCTGA MSDKLPYKVEGGFDEESGAAPDPPICALRGHPQQLQAAGTRLLRPVRLLPVPLLPQRLLLPRAQPQLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32741 FASTKD3::LINC01019 ENSG00000124279.12::ENSG00000248118.2 SKLU1 SRR8616050 SRR8670681 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FASTKD3 ENSG00000124279.12 protein_coding - - chr5:7859159-7869037:- chr5:7862823:- chr5:7859272-7869150:- chr5:7862936:- LINC01019 ENSG00000248118.2 lncRNA - - chr5:3357264-3536094:- chr5:3531878:- chr5:3357378-3536208:- chr5:3531992:- chr5:7862260,chr5:7862263 chr5:3532808,chr5:3532808 NA NA chr5:7862373,chr5:7862376 chr5:3532922,chr5:3532922 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:4.32Mb] 24 7 24 7 ONLY_REF_SPLICE YES_LDAS 0.2307 GT 1.7056 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32746 UTRN::STXBP5-AS1 ENSG00000152818.20::ENSG00000233452.9 SKMEL30 SRR8616055 SRR8670680 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UTRN ENSG00000152818.20 protein_coding + + chr6:144285335-144853034:+ chr6:144782123:+ chr6:144606471-145174170:+ chr6:145103259:+ STXBP5-AS1 ENSG00000233452.9 lncRNA - - chr6:146824539-147204614:- chr6:146860743:- chr6:147145675-147525750:- chr6:147181879:- chr6:144787134,chr6:144787134,chr6:144787134 chr6:146927640,chr6:146927675,chr6:146927686 NA NA chr6:145108270,chr6:145108270,chr6:145108270 chr6:147248776,chr6:147248811,chr6:147248822 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:1.99Mb] 3 6 3 6 ONLY_REF_SPLICE YES_LDAS 0.1157 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32747 C1orf43::SCAMP3 ENSG00000143612.21::ENSG00000116521.11 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 2063 FALSE NA FALSE NA C1orf43 ENSG00000143612.21 protein_coding - - chr1:154206696-154220637:- chr1:154219836:- chr1:154179172-154193113:- chr1:154192312:- SCAMP3 ENSG00000116521.11 protein_coding - - chr1:155255979-155262430:- chr1:155256791:- chr1:155225770-155232221:- chr1:155226582:- chr1:154219562 chr1:155257340 NA NA chr1:154192038 chr1:155227131 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NICE-3|7-97|4.2e-45^NICE-3-PARTIAL|96-168~|4.3e-20^6PGD-PARTIAL|113-168~|1.3e-07 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:1.04Mb] 310 595 310 595 ONLY_REF_SPLICE YES_LDAS 10.5174 GT 1.6895 AG 1.8256 ENST00000368519.5 1-168 ENST00000355379.3 702-966 chr1|-|[2]154219836-154219937[0]|[2]154220342-154220407[0]<==>chr1|-|[2]155256273-155256419[0]|[2]155256674-155256791[2] atggcgtccggcagtaactggctctccggggtgaatgtcgtgctggtgatggcctacgggagcctggtgtttgtactgctatttatttttgtgaagaggcaaatcatgcgctttgcaatgaaatctcgaaggggacctcatgtccctgtgggacacaatgcccccaagTGGCTGGATCTCTGCTCTGGTGGTGCCGAAGGGCAACACAGCAGTATCCGTGCTCATGCTGCTGGTCGCCCTGCTCTTCACTGGCATTGCTGTGCTAGGAATTGTCATGCTGAAACGGATCCACTCCTTATACCGCCGCACAGGTGCCAGCTTTCAGAAGGCCCAGCAAGAATTTGCTGCTGGTGTCTTCTCCAACCCTGCGGTGCGAACCGCAGCTGCCAATGCAGCCGCTGGGGCTGCTGAAAATGCCTTCCGGGCCCCGTGA MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKWLDLCSGGAEGQHSSIRAHAAGRPALHWHCCARNCHAETDPLLIPPHRCQLSEGPARICCWCLLQPCGANRSCQCSRWGC*KCLPGPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32748 UBE2Q1::VPS72 ENSG00000160714.10::ENSG00000163159.15 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 2064 TRUE 3814 TRUE 1441 UBE2Q1 ENSG00000160714.10 protein_coding - - chr1:154548577-154559028:- chr1:154551397:- chr1:154521053-154531504:- chr1:154523873:- VPS72 ENSG00000163159.15 protein_coding - - chr1:151176304-151195321:- chr1:151185950:- chr1:151148780-151167797:- chr1:151158426:- chr1:154551198,chr1:154551209 chr1:151195180,chr1:151195188 NA NA chr1:154523674,chr1:154523685 chr1:151167656,chr1:151167664 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RWD|44-134|1.2e-05^UQ_con|104-122|0.1^Hmw_CFAP97|130-233|7.4e-05^DUF6479|173-216|0.00087^Hmw_CFAP97|214-240|0.0061^UQ_con|255-291|0.37^Josephin|255-304|4.1e-05^RWD|313-339|0.013^UQ_con|317-406|1.1e-12^Hmw_CFAP97|388-411|1.5 YL1-PARTIAL|~118-216|7.7e-45^YL1_C|302-330|7.4e-16 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:3.35Mb] 102 89 102 84.12 ONLY_REF_SPLICE YES_LDAS 2.163 GT 1.9219 AG 1.9086 ENST00000292211.5 1-1170 ENST00000354473.4 118-1128 chr1|-|[2]154551397-154551492[0]|[2]154551771-154551819[2]|[1]154551921-154551979[0]|[2]154552093-154552183[2]|[1]154552404-154552464[1]|[0]154552736-154552820[0]|[2]154553032-154553172[0]|[2]154554735-154554785[0]|[2]154555428-154555532[0]|[2]154555860-154555964[0]|[2]154558227-154558553[0]<==>chr1|-|[2]151176644-151177064[2]|[1]151178001-151178145[1]|[0]151184317-151184493[1]|[0]151185506-151185620[0]|[2]151185798-151185950[0] atgcagcagccgcagccgcaggggcagcagcagccggggccggggcagcagctggggggccagggggcggcgccgggggccgggggcggcccaggggggggcccggggccggggccctgcctgaggcgagagctgaagctgctcgagtccatcttccaccgcggccacgagcgcttccgcattgccagcgcctgcctggacgagctgagctgcgagttcctgctggctggggccggaggggccggggcgggggccgcgcccggaccgcatctccccccacgggggtcggtgcctggggatcctgtccgcatccactgcaacatcacggagtcataccctgctgtgccccccatctggtcggtggagtctgatgaccctaacttggctgctgtcttggagaggctggtggacataaagaaagggaatactctgctattgcagcatctgaagaggatcatctccgacctgtgtaaactctataacctccctcagcatccagatgtggagatgctggatcaacccttgccagcagagcagtgcacacaggaagacgtgtcttcagaagatgaagatgaggagatgcctgaggacacagaagacttagatcactatgaaatgaaagaggaagagccagctgagggcaagaaatctgaagatgatggcattggaaaagaaaacttggccatcctagagaaaattaaaaagaaccagaggcaagattacttaaatggtgcagtgtctggctcggtgcaggccactgaccggctgatgaaggagctcagggatatataccgatcacagagtttcaaaggcggaaactatgcagtcgaactcgtgaatgacagtctgtatgattggaatgtcaaactcctcaaagttgaccaggacagcgctttgcacaacgatctccagatcctcaaagagaaagaaggagccgacttcattctacttaacttttcctttaaagataactttccctttgacccaccatttgtcagggttgtgtctccagtcctctctggagggtatgttctgggcggaggggccatctgcatggaacttctcaccaaacagggctggagcagtgcctactccatagagtcagtgatcatgcagatcagtgccacactggtgaaggggaaagcacgagtgcagtttggagccaacaaaGAATCCGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAGAGGACGAAGTGGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTCACCAAGGCCTATAAGGAACCTCTCAAGAGCTTAAGGCCTCGAAAGGTCAACACCCCGGCTGGTAGCTCTCAGAAGGCGCGAGAAGAGAAGGCACTACTGCCATTAGAACTACAAGATGACGGCTCTGACAGTCGGAAGTCTATGCGTCAGTCTACAGCTGAGCATACACGACAAACGTTCCTTCGGGTACAGGAGAGGCAGGGCCAGTCAAGACGGCGAAAGGGGCCCCACTGTGAGCGGCCACTAACCCAGGAGGAACTGCTCCGGGAGGCCAAGATCACAGAAGAGCTTAATTTACGGTCACTGGAGACATATGAGCGGCTCGAGGCTGATAAAAAGAAGCAGGTTCATAAGAAGCGGAAGTGCCCCGGGCCCATAATCACCTATCATTCAGTGACAGTGCCACTTGTTGGGGAGCCAGGCCCCAAGGAAGAGAACGTTGACATAGAAGGCTCTTTGTGTTTTTCCTTGTCTTTTGTCCTCAGACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTGGACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGTGATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGTCCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGGACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATTCGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGCCTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTGGGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSLCFSLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32749 CTTN::TRIM37 ENSG00000085733.16::ENSG00000108395.14 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 2066 FALSE NA FALSE NA CTTN ENSG00000085733.16 protein_coding + + chr11:70398404-70436584:+ chr11:70429199:+ chr11:70244510-70282690:+ chr11:70275305:+ TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59032090:- chr17:57059999-57184282:- chr17:57109451:- chr11:70432498 chr17:59035563 NA NA chr11:70278604 chr17:57112924 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HS1_rep|83-117|2.2e-21^TMEM210|85-103|0.017^OMP_b-brl|86-147|0.0037^HS1_rep|120-155|7.8e-23^TMEM210|121-140|0.023^TMEM210|151-175|0.019^HS1_rep|157-192|4.7e-23^OMP_b-brl|173-296|0.00099^TMEM210|191-215|0.23^HS1_rep|194-228|1.3e-21^HS1_rep|231-266|4.7e-24^TMEM210|231-245|0.25^HS1_rep|268-303|6.3e-22^TMEM210|269-285|0.68^TMEM210|304-323|0.0072^HS1_rep|305-330|4.2e-13^TAF4|325-395|1.5e-05^MCU|333-400|0.00054^CCDC47|342-399|0.0052^Casc1_N|359-400|0.0041^SH3_2|497-548|8.6e-13^SH3_1|498-543|1.7e-19^SH3_9|499-547|7.6e-20 none ["CTTN:Oncogene"];["TRIM37:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr17] 64 31 64 31 ONLY_REF_SPLICE YES_LDAS 1.1041 GT 1.5329 AG 1.9086 ENST00000301843.13 1-1176 ENST00000262294.12 1754-2895 chr11|+|[0]70407298-70407384[2]|[0]70407518-70407591[1]|[2]70409831-70409960[2]|[0]70414542-70414652[2]|[0]70415663-70415717[0]|[1]70417013-70417123[0]|[1]70419746-70419856[0]|[1]70420400-70420510[0]|[1]70421470-70421580[0]|[1]70422940-70422995[2]|[0]70425332-70425401[0]|[1]70429051-70429199[2]<==>chr17|-|[2]58999377-58999459[1]|[0]59001598-59001714[1]|[0]59012328-59012446[2]|[1]59015610-59015799[1]|[0]59017296-59017424[1]|[0]59028415-59028723[1]|[0]59031896-59032090[1] atgtggaaagcttcagcaggccacgctgtgtccatcgcccaggatgacgcgggggccgatgactgggagaccgaccctgattttgtgaatgatgtgagtgagaaggagcaaagatggggtgccaagacggtgcagggctccgggcaccaggagcatatcaacatacacaagctgagggagaatgtctttcaagagcatcagacccttaaggagaaggaacttgaaacaggaccaaaagcttcccatggctatggagggaaatttggtgtggaacaagaccgaatggataagtcagctgtcggccacgaatatcagtcgaaactttccaagcactgctcgcaggtggactcggtccgtggcttcggaggcaagtttggtgtccagatggacagagttgatcagtctgctgtaggctttgaataccaggggaagactgagaagcatgcctcccagaaagactactccagtggttttggcggcaagtatggcgtgcaggccgaccgagtagacaagagcgcggtgggcttcgactaccagggcaagacggagaagcacgagtcacagagagattactccaaaggtttcggcggcaaatacggtatcgacaaggacaaagtggataagagcgccgttggctttgagtatcaaggcaaaacggagaagcacgagtcccagaaagactatgtgaaagggtttggaggaaaatttggtgtgcagacagacagacaagacaaatgtgcccttggctgggatcaccaggagaaattgcagctgcatgaatcccaaaaagattataagactggttttggaggcaaattcggtgttcagtcggagaggcaggactccgctgctgtggggtttgattacaaggagaagctggccaagcacgagtcccagcaagactactccaaaggattcggcgggaagtatggggtgcagaaggatcggatggataagaatgcgtcaacctttgaggatgtcacccaggtgtcctctgcctaccagaagacagtacctgtcgaagctgtgaccagcaaaacaagtaacatcagagctaactttgaaaacctcgctaaggagaaagagcaggaggacaggcggaaggcggaggcggagagagcccagcggatggccaaggagcggcaggagcaggaagaggccaggaggaagctggagGTAGTAGCCATGGTTATGTGGGTTCCAGTAGTAGAATATCAAGAAGAACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATTAATTTTAATACATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGCCCACCTGCTTCACTTCTGCAGCCCACAGCATCATATTCTCGAAAAGATAAAGACCAAAGGAAGCAACAGGCAATGTGGCGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACTCAAATGGCCGAAGTTCGATGTATGAAAACTGATGTAAAGAATACACTTTCAGAAATAAAAAGCAGCAGTGCTGCTTCTGGAGACATGCAGACAAGCCTTTTTTCTGCTGACCAGGCAGCTCTGGCTGCATGTGGAACTGAAAACTCTGGCAGATTGCAGGATTTGGGAATGGAACTCCTGGCAAAGTCATCAGTTGCCAATTGTTACATACGAAACTCCACAAATAAGAAGAGTAATTCGCCCAAGCCAGCTCGATCCAGTGTAGCAGGTAGTCTATCACTTCGAAGAGCAGTGGACCCTGGAGAAAATAGTCGTTCAAAGGGAGACTGTCAGACTCTGTCTGAAGGCTCCCCAGGAAGCTCTCAGTCTGGGAGCAGGCACAGTTCTCCCCGAGCCTTGATACATGGCAGTATCGGTGATATTCTGCCAAAAACTGAAGACCGGCAGTGTAAAGCTTTGGATTCAGATGCTGTTGTGGTTGCAGTTTTCAGTGGCTTGCCTGCGGTTGAGAAAAGGAGGAAAATGGTCACCTTGGGGGCTAATGCTAAAGGAGGTCATCTGGAAGGACTGCAGATGACTGATTTGGAAAATAATTCTGAAACTGGAGAGTTACAGCCTGTACTACCTGAAGGAGCTTCAGCTGCCCCTGAAGAAGGAATGAGTAGCGACAGTGACATTGAATGTGACACTGAGAATGAGGAGCAGGAAGAGCATACCAGTGTGGGCGGGTTTCACGACTCCTTCATGGTCATGACACAGCCCCCGGATGAAGATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAAAATAGTGGAAGGTAA MWKASAGHAVSIAQDDAGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRENVFQEHQTLKEKELETGPKASHGYGGKFGVEQDRMDKSAVGHEYQSKLSKHCSQVDSVRGFGGKFGVQMDRVDQSAVGFEYQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQGKTEKHESQRDYSKGFGGKYGIDKDKVDKSAVGFEYQGKTEKHESQKDYVKGFGGKFGVQTDRQDKCALGWDHQEKLQLHESQKDYKTGFGGKFGVQSERQDSAAVGFDYKEKLAKHESQQDYSKGFGGKYGVQKDRMDKNASTFEDVTQVSSAYQKTVPVEAVTSKTSNIRANFENLAKEKEQEDRRKAEAERAQRMAKERQEQEEARRKLEVVAMVMWVPVVEYQEEHIYAPLLPVVY*TLIH*F*YICWTLRTGAV*KICGAYSLAHLLHFCSPQHHILEKIKTKGSNRQCGECPLI*RC*KDSKLKWPKFDV*KLM*RIHFQK*KAAVLLLETCRQAFFLLTRQLWLHVELKTLADCRIWEWNSWQSHQLPIVTYETPQIRRVIRPSQLDPV*QVVYHFEEQWTLEKIVVQRETVRLCLKAPQEALSLGAGTVLPEP*YMAVSVIFCQKLKTGSVKLWIQMLLWLQFSVACLRLRKGGKWSPWGLMLKEVIWKDCR*LIWKIILKLESYSLYYLKELQLPLKKE*VATVTLNVTLRMRSRKSIPVWAGFTTPSWS*HSPRMKIHIPVFLMVNK*ALKISASIQMKIVEG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32755 UBE2Q1::VPS72 ENSG00000160714.10::ENSG00000163159.15 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE TRUE 2065 TRUE 3814 TRUE 1441 UBE2Q1 ENSG00000160714.10 protein_coding - - chr1:154548577-154559028:- chr1:154551771:- chr1:154521053-154531504:- chr1:154524247:- VPS72 ENSG00000163159.15 protein_coding - - chr1:151176304-151195321:- chr1:151185950:- chr1:151148780-151167797:- chr1:151158426:- chr1:154551198,chr1:154551209 chr1:151195180,chr1:151195188 NA NA chr1:154523674,chr1:154523685 chr1:151167656,chr1:151167664 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RWD|44-134|1.2e-05^UQ_con|104-122|0.1^Hmw_CFAP97|130-233|7.4e-05^DUF6479|173-216|0.00087^Hmw_CFAP97|214-240|0.0061^UQ_con|255-291|0.37^Josephin|255-304|4.1e-05^RWD|313-339|0.013^UQ_con|317-406|1.1e-12^Hmw_CFAP97|388-411|1.5 YL1-PARTIAL|~118-216|7.7e-45^YL1_C|302-330|7.4e-16 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:3.35Mb] 14 53 14 4.88 ONLY_REF_SPLICE YES_LDAS 0.2194 GT 1.7819 AG 1.9086 ENST00000292211.5 1-1074 ENST00000354473.4 118-1128 chr1|-|[2]154551771-154551819[2]|[1]154551921-154551979[0]|[2]154552093-154552183[2]|[1]154552404-154552464[1]|[0]154552736-154552820[0]|[2]154553032-154553172[0]|[2]154554735-154554785[0]|[2]154555428-154555532[0]|[2]154555860-154555964[0]|[2]154558227-154558553[0]<==>chr1|-|[2]151176644-151177064[2]|[1]151178001-151178145[1]|[0]151184317-151184493[1]|[0]151185506-151185620[0]|[2]151185798-151185950[0] atgcagcagccgcagccgcaggggcagcagcagccggggccggggcagcagctggggggccagggggcggcgccgggggccgggggcggcccaggggggggcccggggccggggccctgcctgaggcgagagctgaagctgctcgagtccatcttccaccgcggccacgagcgcttccgcattgccagcgcctgcctggacgagctgagctgcgagttcctgctggctggggccggaggggccggggcgggggccgcgcccggaccgcatctccccccacgggggtcggtgcctggggatcctgtccgcatccactgcaacatcacggagtcataccctgctgtgccccccatctggtcggtggagtctgatgaccctaacttggctgctgtcttggagaggctggtggacataaagaaagggaatactctgctattgcagcatctgaagaggatcatctccgacctgtgtaaactctataacctccctcagcatccagatgtggagatgctggatcaacccttgccagcagagcagtgcacacaggaagacgtgtcttcagaagatgaagatgaggagatgcctgaggacacagaagacttagatcactatgaaatgaaagaggaagagccagctgagggcaagaaatctgaagatgatggcattggaaaagaaaacttggccatcctagagaaaattaaaaagaaccagaggcaagattacttaaatggtgcagtgtctggctcggtgcaggccactgaccggctgatgaaggagctcagggatatataccgatcacagagtttcaaaggcggaaactatgcagtcgaactcgtgaatgacagtctgtatgattggaatgtcaaactcctcaaagttgaccaggacagcgctttgcacaacgatctccagatcctcaaagagaaagaaggagccgacttcattctacttaacttttcctttaaagataactttccctttgacccaccatttgtcagggttgtgtctccagtcctctctggagggtatgttctgggcggaggggccatctgcatggaacttctcaccaaacagGAATCCGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAGAGGACGAAGTGGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGGAAGCGCCGAGTAGTCACCAAGGCCTATAAGGAACCTCTCAAGAGCTTAAGGCCTCGAAAGGTCAACACCCCGGCTGGTAGCTCTCAGAAGGCGCGAGAAGAGAAGGCACTACTGCCATTAGAACTACAAGATGACGGCTCTGACAGTCGGAAGTCTATGCGTCAGTCTACAGCTGAGCATACACGACAAACGTTCCTTCGGGTACAGGAGAGGCAGGGCCAGTCAAGACGGCGAAAGGGGCCCCACTGTGAGCGGCCACTAACCCAGGAGGAACTGCTCCGGGAGGCCAAGATCACAGAAGAGCTTAATTTACGGTCACTGGAGACATATGAGCGGCTCGAGGCTGATAAAAAGAAGCAGGTTCATAAGAAGCGGAAGTGCCCCGGGCCCATAATCACCTATCATTCAGTGACAGTGCCACTTGTTGGGGAGCCAGGCCCCAAGGAAGAGAACGTTGACATAGAAGGCTCTTTGTGTTTTTCCTTGTCTTTTGTCCTCAGACTTGATCCTGCTCCCTCGGTGTCTGCATTGACTCCTCATGCTGGGACTGGACCCGTCAACCCCCCTGCTCGCTGCTCACGTACCTTCATCACTTTTAGTGATGATGCAACTTTCGAGGAATGGTTCCCCCAAGGGCGGCCCCCAAAAGTCCCTGTTCGTGAGGTCTGTCCAGTGACCCATCGTCCAGCCCTATACCGGGACCCTGTTACAGACATACCCTATGCCACTGCTCGAGCCTTCAAGATCATTCGTGAGGCTTACAAGAAGTACATTACTGCCCATGGACTGCCGCCCACTGCCTCAGCCCTGGGCCCCGGCCCGCCACCTCCTGAGCCCCTCCCTGGCTCTGGGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGA MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVNTPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGSLCFSLSFVLRLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32758 DIXDC1::BCO2 ENSG00000150764.14::ENSG00000197580.13 SKMEL5 SRR8616056 SRR8670677 SKIN malignant_melanoma metastasis star-fusion TRUE FALSE TRUE 2067 FALSE NA FALSE NA DIXDC1 ENSG00000150764.14 protein_coding + + chr11:111927144-112022653:+ chr11:111937559:+ chr11:111797868-111893377:+ chr11:111808283:+ BCO2 ENSG00000197580.13 protein_coding + + chr11:112175510-112224699:+ chr11:112193474:+ chr11:112046233-112095422:+ chr11:112064197:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CH-PARTIAL|22-60~|2.8e-22^CAMSAP_CH-PARTIAL|34-60~|1.2e-07^CH_2-PARTIAL|34-60~|1.3e-06 RPE65-PARTIAL|~294-578|1.1e-125 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.15Mb] 10 2 10 2 ONLY_REF_SPLICE YES_LDAS 0.1394 GT 1.8892 AG 1.8892 ENST00000440460.7 1-60 ENST00000357685.11 294-1740 chr11|+|[0]111937500-111937559[2]<==>chr11|+|[2]112193474-112193697[0]|[1]112193879-112193994[2]|[0]112194653-112194755[0]|[1]112199699-112199827[0]|[1]112200613-112200773[2]|[0]112202023-112202190[2]|[0]112213724-112213861[2]|[0]112214762-112214944[2]|[0]112216220-112216330[2]|[0]112217761-112217874[2] atgctagcctgcctgacccgagggaacttactggacgtcctgcaggagggcttcaatgagGTACAATCATTGGTTTGATGGGATGGCGCTGCTTCACCAGTTCAGAATGGCAAAGGGCACAGTGACATACAGGAGCAAGTTTCTACAGAGTGATACATATAAGGCCAACAGTGCTAAAAACCGAATTGTGATCTCAGAATTTGGCACACTGGCTCTCCCGGATCCATGCAAGAATGTTTTTGAACGTTTCATGTCCAGGTTTGAGCTGCCTGGTAAAGCTGCAGCCATGACTGACAATACTAATGTCAACTATGTGCGGTACAAGGGTGATTACTACCTCTGCACTGAGACCAACTTTATGAATAAAGTGGACATTGAAACTCTGGAAAAAACAGAAAAGGTAGATTGGAGCAAATTTATTGCTGTGAATGGAGCAACTGCACATCCTCATTATGACCTGGATGGAACAGCATACAATATGGGGAACTCCTTTGGGCCATATGGTTTCTCCTATAAGGTTATTCGGGTTCCTCCAGAGAAGGTGGACCTTGGGGAGACAATCCATGGAGTCCAGGTGATATGTTCTATTGCTTCTACAGAGAAAGGGAAACCTTCTTACTACCATAGCTTTGGAATGACAAGGAACTATATAATTTTCATTGAACAACCTCTAAAGATGAACCTGTGGAAAATTGCCACTTCTAAAATTCGGGGAAAGGCCTTTTCAGATGGGATAAGCTGGGAACCCCAGTGTAATACGCGGTTTCATGTGGTGGAAAAACGCACTGGACAGCTCCTTCCAGGGAGATACTACAGCAAACCTTTTGTTACATTTCATCAAATCAATGCCTTTGAGGACCAGGGCTGTGTTATAATTGATTTGTGCTGTCAAGATAATGGAAGAACCCTAGAAGTTTACCAGTTACAGAATCTCAGGAAGGCTGGGGAAGGGCTTGATCAGGTCCATAATTCAGCAGCCAAATCTTTCCCTCGAAGGTTTGTTTTGCCTTTAAATGTCAGTTTGAATGCCCCTGAGGGAGACAACCTGAGTCCATTGTCCTATACTTCAGCCAGTGCTGTGAAACAGGCTGATGGAACGATCTGGTGCTCTCATGAAAATCTACATCAGGAGGACCTAGAAAAGGAAGGAGGCATTGAATTTCCTCAGATCTACTATGATCGATTCAGTGGCAAAAAGTATCATTTCTTTTATGGCTGTGGCTTTCGGCATTTAGTGGGGGATTCTCTGATCAAGGTTGATGTGGTGAATAAGACACTGAAGGTTTGGAGAGAAGATGGCTTTTATCCCTCAGAACCTGTTTTTGTTCCAGCACCAGGAACCAATGAAGAAGATGGTGGGGTTATTCTTTCTGTGGTGATCACTCCCAACCAGAATGAAAGCAATTTTATCCTAGTTTTGGATGCCAAGAACTTTGAAGAGCTGGGCCGAGCAGAGGTACCTGTGCAGATGCCTTATGGGTTCCATGGTACCTTCATACCCATCTGA MLACLTRGNLLDVLQEGFNEVQSLV*WDGAASPVQNGKGHSDIQEQVSTE*YI*GQQC*KPNCDLRIWHTGSPGSMQECF*TFHVQV*AAW*SCSHD*QY*CQLCAVQG*LLPLH*DQLYE*SGH*NSGKNRKGRLEQIYCCEWSNCTSSL*PGWNSIQYGELLWAIWFLL*GYSGSSREGGPWGDNPWSPGDMFYCFYRERETFLLP*LWNDKELYNFH*TTSKDEPVENCHF*NSGKGLFRWDKLGTPV*YAVSCGGKTHWTAPSREILQQTFCYISSNQCL*GPGLCYN*FVLSR*WKNPRSLPVTESQEGWGRA*SGP*FSSQIFPSKVCFAFKCQFECP*GRQPESIVLYFSQCCETG*WNDLVLS*KSTSGGPRKGRRH*ISSDLL*SIQWQKVSFLLWLWLSAFSGGFSDQG*CGE*DTEGLERRWLLSLRTCFCSSTRNQ*RRWWGYSFCGDHSQPE*KQFYPSFGCQEL*RAGPSRGTCADALWVPWYLHTHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32763 PPP1CC::HAUS7 ENSG00000186298.12::ENSG00000213397.12 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2071 FALSE NA FALSE NA PPP1CC ENSG00000186298.12 protein_coding - - chr12:110719680-110742939:- chr12:110742653:- chr12:111157485-111180744:- chr12:111180458:- HAUS7 ENSG00000213397.12 protein_coding - - chrX:153447668-153495516:- chrX:153457228:- chrX:152713126-152760974:- chrX:152722686:- chr12:110728656 chrX:153462137 NA NA chr12:111166461 chrX:152727595 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame STPPase_N-PARTIAL|9-55~|1.5e-27 none ["PPP1CC:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chrX] 111 48 111 48 ONLY_REF_SPLICE YES_LDAS 1.9795 GT 1.8892 AG 1.5219 ENST00000551676.5 1-55 ENST00000370211.10 355-1077 chr12|-|[0]110742653-110742707[0]<==>chrX|-|[2]153447878-153447909[1]|[0]153454394-153454508[0]|[2]153455542-153455766[0]|[2]153456265-153456364[2]|[1]153456493-153456651[2]|[1]153457137-153457228[0] atggcggatttagataaactcaacatcgacagcattatccaacggctgctggaagGGCTGTGCCTGCGCCCAGAAGCAGCTACACTTCATGGACCAGTTGCTCGATACCATCCGGAGCCTGACCATTGGGTGCTCCAGTTGCTCGAGCCTGATGGAGCACTTCGAGGACACCAGGGAGAAGAACGAGGCCTTGCTGGGGGAGCTCTTCTCTAGCCCCCACCTGCAGATGCTCCTGAATCCAGAGTGCGACCCGTGGCCCCTGGACATGCAGCCCCTCCTCAACAAGCAGAGTGATGACTGGCAGTGGGCCAGTGCCTCTGCCAAGTCCGAGGAGGAGGAGAAGCTGGCGGAGCTTGCCAGGCAGCTGCAGGAGAGTGCTGCCAAGTTGCACGCGCTTAGAACGGAGTACTTTGCACAGCATGAGCAAGGGGCTGCTGCGGGCGCAGCCGACATCAGCACCCTAGACCAGAAGCTGCGTCTGGTCACTTCCGACTTCCACCAGCTAATCTTGGCTTTTCTCCAAGTCTACGACGACGAGCTGGGCGAGTGCTGCCAGCGCCCAGGCCCTGACCTCCACCCGTGCGGCCCCATCATCCAGGCCACGCACCAGAATCTGACTTCCTACAGCCAACTGCTGCAAGTGGTCATGGCAGTTGCTGACACCTCTGCGAAGGCCGTGGAGACCGTGAAGAAGCAGCAAGGCGAGCAGATCTGCTGGGGTGGCAGCAGCTCCGTCATGAGTCTAGCTACCAAGATGAATGAACTAATGGAGAAATAG MADLDKLNIDSIIQRLLEGLCLRPEAATLHGPVARYHPEPDHWVLQLLEPDGALRGHQGEERGLAGGALL*PPPADAPESRVRPVAPGHAAPPQQAE**LAVGQCLCQVRGGGEAGGACQAAAGECCQVARA*NGVLCTA*ARGCCGRSRHQHPRPEAASGHFRLPPANLGFSPSLRRRAGRVLPAPRP*PPPVRPHHPGHAPESDFLQPTAASGHGSC*HLCEGRGDREEAARRADLLGWQQLRHESSYQDE*TNGEI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32766 WWOX::VAT1L ENSG00000186153.19::ENSG00000171724.3 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2074 FALSE NA FALSE NA WWOX ENSG00000186153.19 protein_coding + + chr16:78099400-79212667:+ chr16:78164289:+ chr16:78133297-79246564:+ chr16:78198186:+ VAT1L ENSG00000171724.3 protein_coding + + chr16:77788564-77980107:+ chr16:77971850:+ chr16:77822461-78014004:+ chr16:78005747:+ chr16:78219049,chr16:78219048 chr16:77951087,chr16:77951083 NA NA chr16:78252946,chr16:78252945 chr16:77984984,chr16:77984980 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WW|18-47|9.7e-14^WW|59-88|5.1e-11^adh_short|125-262|1.1e-24^KR|127-250|1.1e-10^Epimerase|127-261|1e-05^adh_short_C2|131-262|1.8e-17^adh_short|286-327|1.1e-05^adh_short_C2|292-326|0.0065 none ["WWOX:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.12Mb] 27 12 27 12 ONLY_REF_SPLICE YES_LDAS 0.4855 GT 1.5656 AG 1.7968 ENST00000683929.1 1-516 ENST00000302536.3 1078-1260 chr16|+|[0]78099779-78099885[1]|[2]78108423-78108487[0]|[1]78109778-78109835[1]|[2]78114976-78115154[0]|[1]78164183-78164289[2]<==>chr16|+|[0]77971850-77971933[2]|[0]77977597-77977695[2] atggcagcgctgcgctacgcggggctggacgacacggacagtgaggacgagctgcctccgggctgggaggagagaaccaccaaggacggctgggtttactacgccaatcacaccgaggagaagactcagtgggaacatccaaaaactggaaaaagaaaacgagtggcaggagatttgccatacggatgggaacaagaaactgatgagaacggacaagtgttttttgttgaccatataaataaaagaaccacctacttggacccaagactggcgtttactgtggatgataatccgaccaagccaaccacccggcaaagatacgacggcagcaccactgccatggaaattctccagggccgggatttcactggcaaagtggttgtggtcactggagctaattcaggaatagggttcgaaaccgccaagtcttttgccctccatggtgcacatgtgatcttggcctgcaggaacatggcaagggcgagtgaagcagtgtcacgcattttagaagaatggGTGAAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTGGCAAGTTAATTCTGGATGTAGAAAAGACCCCAACTCCACTGATGGCCAATGACAGCACAGAGACCAGTGAAGCAGGGGAAGAGGAGGAGGACCACGAGGGAGACAGCGAGAACAAGGAGCGGATGCCCTTTATCCAGTAA MAALRYAGLDDTDSEDELPPGWEERTTKDGWVYYANHTEEKTQWEHPKTGKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKPTTRQRYDGSTTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWVKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSENKERMPFIQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine no_match TRUE Colon adenocarcinoma,Stomach adenocarcinoma COLON,STOMACH no_match 78198186,78133782 TRUE,FALSE 78005747,77850818 TRUE,FALSE YES,YES In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32768 PPIG::ROCK2 ENSG00000138398.17::ENSG00000134318.16 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2075 FALSE NA FALSE NA PPIG ENSG00000138398.17 protein_coding + + chr2:169584342-169641406:+ chr2:169584490:+ chr2:170440852-170497916:+ chr2:170441000:+ ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11249798:- chr2:11319885-11488456:- chr2:11389924:- chr2:169585073,chr2:169585071,chr2:169585072 chr2:11261027,chr2:11261028,chr2:11261028 NA NA chr2:170441583,chr2:170441581,chr2:170441582 chr2:11401153,chr2:11401154,chr2:11401154 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:158.24Mb] 20 5 20 4.17 ONLY_REF_SPLICE YES_LDAS 0.3009 GT 1.9656 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32771 MRPL11::ENSG00000254510 ENSG00000174547.13::ENSG00000254510.3 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MRPL11 ENSG00000174547.13 protein_coding - - chr11:66435075-66466738:- chr11:66437350:- chr11:66202546-66234209:- chr11:66204821:- ENSG00000254510 ENSG00000254510.3 lncRNA + + chr11:66409158-66417227:+ chr11:66416793:+ chr11:66176629-66184698:+ chr11:66184264:+ chr11:66437140 chr11:66414812 NA NA chr11:66204611 chr11:66182283 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 11 17 11 ONLY_REF_SPLICE YES_LDAS 0.3485 GT 1.5656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32774 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2077 TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115144813:- chr3:114033347-114866139:- chr3:114863660:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115852617:- chr3:115521221-116858236:- chr3:115571464:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.66Mb] 13 3 13 1.39 ONLY_REF_SPLICE YES_LDAS 0.1791 GT 1.9086 AG 1.5219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,TRUE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32786 OXNAD1::FBLN2 ENSG00000154814.14::ENSG00000163520.14 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2079 FALSE NA FALSE NA OXNAD1 ENSG00000154814.14 protein_coding + + chr3:16265160-16350299:+ chr3:16271722:+ chr3:16306667-16391806:+ chr3:16313229:+ FBLN2 ENSG00000163520.14 protein_coding + + chr3:13549125-13638422:+ chr3:13608062:+ chr3:13590625-13679922:+ chr3:13649562:+ chr3:16280527,chr3:16280528 chr3:13595069,chr3:13595067 NA NA chr3:16322034,chr3:16322035 chr3:13636569,chr3:13636567 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NAD_binding_6-PARTIAL|188-237~|1.1e-11^NAD_binding_1-PARTIAL|192-237~|6.5e-18 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:2.63Mb] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1369 GT 1.8892 AG 1.7465 ENST00000435829.6 1-237 ENST00000404922.8 1307-3696 chr3|+|[0]16269246-16269275[2]|[0]16270929-16271071[1]|[2]16271659-16271722[2]<==>chr3|+|[1]13608062-13608173[1]|[2]13609513-13609642[2]|[0]13613984-13614164[0]|[1]13618076-13618285[0]|[1]13618904-13619017[0]|[1]13619730-13619831[0]|[1]13621775-13621915[0]|[1]13626445-13626579[0]|[1]13627832-13627969[0]|[1]13628905-13629048[0]|[1]13629164-13629292[0]|[1]13629820-13629945[0]|[1]13630699-13630815[0]|[1]13631329-13631457[0]|[1]13636445-13636568[1]|[2]13637562-13637919[2] atgactcctaaaatctcgtggacttctaagttttctgtttgcccagaaagcgccatggcctgtgctgctgttatgattcctgggttgttgcggtgctctgttggagccatccgtattgaggctgcgtcactgagattgacactcagcactttgcgccaccttactctaaccagcataatgaaatccaaaaggaaaactgatcacatggagagaactgcaagtgtccttcgacgggagGCTCCACCAAGGACCTGATCGAGACTTGCTGCGCAGCCGGACAGCAGTGGGCCATTGACAATGACGAGTGCCTGGAGATCCCTGAGAGTGGCACTGAGGACAACGTCTGCAGGACAGCCCAGAGGCACTGCTGTGTCTCCTACTTGCAGGAGAAGAGCTGCATGGCCGGCGTCCTGGGAGCCAAGGAGGGTGAGACCTGTGGGGCTGAGGACAACGACAGCTGCGGCATCTCCCTGTACAAGCAATGCTGTGACTGCTGTGGCCTGGGCCTCCGCGTGCGGGCCGAGGGCCAGTCGTGTGAGTCCAATCCTAACCTGGGCTATCCCTGCAATCATGTCATGCTCTCCTGCTGTGAGGGTGAAGAGCCTCTCATAGTACCTGAGGTTCGCCGACCTCCAGAGCCCGCAGCTGCACCACGGAGAGTTTCAGAGGCAGAGATGGCGGGCCGAGAGGCCCTGTCACTGGGCACAGAGGCCGAGCTGCCGAACAGCCTGCCGGGCGATGACCAGGATGAGTGCCTTCTCCTCCCGGGAGAGCTGTGCCAGCACCTTTGCATCAATACTGTGGGTTCTTACCACTGTGCCTGCTTTCCTGGCTTCTCACTGCAGGACGATGGCCGCACTTGCCGCCCAGAGGGTCACCCTCCACAGCCGGAAGCCCCACAGGAGCCTGCACTGAAGTCAGAATTTTCCCAGGTGGCCTCTAACACCATCCCGCTGCCACTGCCGCAGCCCAATACCTGCAAAGACAATGGACCCTGCAAGCAGGTGTGCAGCACTGTTGGGGGCTCAGCCATATGCTCCTGTTTTCCCGGCTATGCCATCATGGCGGATGGCGTGTCCTGTGAAGACCAAGACGAGTGCCTGATGGGTGCTCACGATTGTAGCCGGCGACAGTTCTGTGTGAACACCCTGGGATCCTTCTACTGTGTCAACCACACAGTGCTCTGTGCCGATGGCTATATCCTCAATGCGCACAGGAAGTGCGTGGACATCAACGAGTGTGTGACGGACCTGCACACGTGCAGCCGGGGCGAGCACTGTGTGAACACACTGGGCTCCTTCCACTGCTACAAGGCACTCACCTGTGAGCCAGGCTATGCCCTCAAGGATGGCGAGTGCGAAGACGTGGATGAGTGTGCGATGGGCACGCACACCTGCCAGCCGGGCTTCTTGTGCCAGAACACCAAGGGCTCCTTCTACTGCCAGGCCAGGCAGCGCTGCATGGATGGCTTCCTGCAGGATCCTGAAGGCAACTGTGTGGACATCAACGAGTGCACGTCACTGTCCGAGCCATGTCGGCCAGGCTTCAGCTGCATCAACACGGTGGGCTCCTACACATGCCAGAGGAACCCGCTGATCTGCGCGCGCGGCTACCACGCCAGCGATGATGGGACCAAGTGTGTGGACGTGAATGAGTGTGAGACAGGTGTGCACCGCTGCGGTGAGGGCCAAGTGTGCCACAACCTCCCTGGCTCCTACCGCTGTGACTGCAAAGCCGGCTTTCAGCGGGATGCCTTTGGCCGGGGCTGCATCGACGTGAATGAGTGCTGGGCCTCGCCAGGCCGCCTGTGCCAGCACACGTGTGAGAACACACTCGGCTCCTACCGCTGTTCCTGCGCCTCCGGGTTCCTGCTAGCAGCGGACGGCAAGCGCTGTGAAGACGTGAATGAGTGTGAGGCCCAGCGCTGCAGCCAGGAGTGTGCCAACATCTATGGCTCCTACCAGTGCTACTGCCGCCAGGGCTACCAGCTGGCTGAGGATGGGCACACCTGCACAGACATCGACGAGTGTGCTCAAGGCGCCGGCATCCTCTGCACCTTCCGCTGTCTCAACGTGCCAGGGAGCTACCAGTGTGCATGCCCTGAGCAGGGCTACACCATGACGGCCAACGGGAGGTCCTGCAAGGACGTGGATGAGTGTGCACTGGGTACCCACAACTGTTCCGAGGCTGAGACCTGCCACAACATCCAGGGTAGCTTCCGCTGCCTGCGCTTCGAGTGTCCTCCCAACTATGTCCAAGTCTCCAAAACGAAGTGCGAGCGCACCACGTGCCATGACTTCCTGGAGTGCCAGAACTCGCCAGCGCGCATCACGCACTACCAGCTCAACTTCCAGACGGGCCTCCTGGTGCCTGCGCATATCTTCCGCATTGGCCCCGCGCCAGCCTTCACGGGGGACACCATCGCCCTGAACATCATCAAGGGCAATGAGGAGGGCTACTTTGGCACGCGCAGGCTCAATGCCTACACGGGTGTGGTCTACCTGCAGCGGGCCGTGCTGGAGCCCCGGGACTTTGCCCTGGACGTGGAGATGAAGCTCTGGAGGCAGGGCTCCGTCACCACCTTCCTGGCCAAGATGCACATCTTCTTCACCACCTTTGCCCTGTGA MTPKISWTSKFSVCPESAMACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREAPPRT*SRLAAQPDSSGPLTMTSAWRSLRVALRTTSAGQPRGTAVSPTCRRRAAWPASWEPRRVRPVGLRTTTAAASPCTSNAVTAVAWASACGPRASRVSPILTWAIPAIMSCSPAVRVKSLS*YLRFADLQSPQLHHGEFQRQRWRAERPCHWAQRPSCRTACRAMTRMSAFSSRESCASTFASILWVLTTVPAFLASHCRTMAALAAQRVTLHSRKPHRSLH*SQNFPRWPLTPSRCHCRSPIPAKTMDPASRCAALLGAQPYAPVFPAMPSWRMACPVKTKTSA*WVLTIVAGDSSV*TPWDPSTVSTTQCSVPMAISSMRTGSAWTSTSV*RTCTRAAGASTV*THWAPSTATRHSPVSQAMPSRMASAKTWMSVRWARTPASRASCARTPRAPSTARPGSAAWMASCRILKATVWTSTSARHCPSHVGQASAASTRWAPTHARGTR*SARAATTPAMMGPSVWT*MSVRQVCTAAVRAKCATTSLAPTAVTAKPAFSGMPLAGAAST*MSAGPRQAACASTRVRTHSAPTAVPAPPGSC*QRTASAVKT*MSVRPSAAARSVPTSMAPTSATAARATSWLRMGTPAQTSTSVLKAPASSAPSAVSTCQGATSVHALSRATP*RPTGGPARTWMSVHWVPTTVPRLRPATTSRVASAACASSVLPTMSKSPKRSASAPRAMTSWSARTRQRASRTTSSTSRRASWCLRISSALAPRQPSRGTPSP*TSSRAMRRATLARAGSMPTRVWSTCSGPCWSPGTLPWTWR*SSGGRAPSPPSWPRCTSSSPPLPC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE fibulin 2 2 breast cancer, colorectal adenocarcinoma epithelial TSG missense, splice_site 32788 ZBTB20::LSAMP ENSG00000181722.18::ENSG00000185565.13 SKMES1 SRR8616057 SRR8670678 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2076 TRUE 3828 TRUE 1444 ZBTB20 ENSG00000181722.18 protein_coding - - chr3:114314500-115147292:- chr3:115071219:- chr3:114033347-114866139:- chr3:114790066:- LSAMP ENSG00000185565.13 protein_coding - - chr3:115802374-117139389:- chr3:115852617:- chr3:115521221-116858236:- chr3:115571464:- chr3:115048481,chr3:115048484 chr3:115881909,chr3:115881909 NA NA chr3:114767328,chr3:114767331 chr3:115600756,chr3:115600756 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["YOSHIHARA_TCGA","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.66Mb] 5 13 5 11.61 ONLY_REF_SPLICE YES_LDAS 0.2067 GT 1.8892 AG 1.5219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Prostate no_match TRUE Kidney renal clear cell carcinoma,Brain Lower Grade Glioma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Prostate adenocarcinoma,Liver hepatocellular carcinoma,Skin Cutaneous Melanoma,Prostate adenocarcinoma,Lung adenocarcinoma KIDNEY,CENTRAL_NERVOUS_SYSTEM,SKIN,PROSTATE,PROSTATE,LIVER,SKIN,PROSTATE,LUNG exact 114412375,114619151|114592886|114619151,114619151|114619151|114592886,114412375,114519948|114429115|114462559,114519948,114790066,114693213,114412375 FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE,FALSE,FALSE 115529261,115571464|115571464|115561425,115529261|115553444|115529261,115571464,116728221|116163802|116728221,115571464,115571464,115738487,115805403 FALSE,TRUE|TRUE|FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,TRUE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES 5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS,NA,5UTR-CDS,5UTR-CDS,5UTR-CDS,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32791 BMAL2::ENSG00000256615 ENSG00000029153.15::ENSG00000256615.1 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BMAL2 ENSG00000029153.15 protein_coding + + chr12:27332836-27425289:+ chr12:27403541:+ chr12:27485769-27578222:+ chr12:27556474:+ ENSG00000256615 ENSG00000256615.1 lncRNA + + chr12:21662313-21760032:+ chr12:21759914:+ chr12:21815247-21912966:+ chr12:21912848:+ chr12:27412288,chr12:27412285 chr12:21727850,chr12:21727835 NA NA chr12:27565221,chr12:27565218 chr12:21880784,chr12:21880769 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 5 17 5 ONLY_REF_SPLICE YES_LDAS 0.268 GT 1.9329 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32793 PTK2::TRAPPC9 ENSG00000169398.20::ENSG00000167632.18 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2085 FALSE NA FALSE NA PTK2 ENSG00000169398.20 protein_coding - - chr8:140657900-141002216:- chr8:140761165:- chr8:141667999-142012315:- chr8:141771264:- TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140371180:- chr8:140739968-141468678:- chr8:141381279:- chr8:140756179,chr8:140756179,chr8:140756184 chr8:140392080,chr8:140392069,chr8:140392027 NA NA chr8:141766278,chr8:141766278,chr8:141766283 chr8:141402179,chr8:141402168,chr8:141402126 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FERM_N_2|79-174|5.1e-44^FERM_M|180-292|4.9e-16^FERM_F2|184-277|3.3e-06^UCMA|188-238|0.02^FERM_C_FAK1|304-401|1.1e-43^PK_Tyr_Ser-Thr|466-720|2.9e-100^Pkinase|468-718|2.3e-49^FERM_M|495-521|1.9^Haspin_kinase|536-615|1.3e-06^ABC1|541-620|0.0002^Kinase-like|544-659|6.8e-07^FERM_M|564-590|5.8^UCMA|705-738|0.011^Focal_AT|958-1089|4.7e-62^ABC1|992-1052|1.7^FERM_M|1049-1063|9.6^FERM_C_FAK1|1050-1084|0.94 none ["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr8:0.20Mb] 11 10 11 10 ONLY_REF_SPLICE YES_LDAS 0.2558 GT 1.8323 AG 1.9329 ENST00000519419.5 1-1464 ENST00000648948.2 1135-3447 chr8|-|[2]140761165-140761262[1]|[0]140764234-140764290[1]|[0]140789474-140789526[2]|[1]140793354-140793384[1]|[0]140800459-140800576[0]|[2]140803543-140803650[0]|[2]140818277-140818354[0]|[2]140818880-140819020[0]|[2]140830472-140830526[2]|[1]140846260-140846322[2]|[1]140846599-140846678[0]|[2]140864312-140864399[2]|[1]140879471-140879637[0]|[2]140890543-140890769[1]|[0]140920814-140920913[0]<==>chr8|-|[2]139731061-139731228[0]|[2]139731979-139732202[1]|[0]139885879-139885969[0]|[2]139910147-139910300[2]|[1]139988726-139988836[2]|[1]140023937-140024079[0]|[2]140221459-140221583[1]|[0]140252777-140252929[1]|[0]140275658-140275821[2]|[1]140283889-140284021[1]|[0]140287608-140287734[0]|[2]140290993-140291078[1]|[0]140300469-140300614[2]|[1]140311248-140311374[1]|[0]140360050-140360193[1]|[0]140370964-140371180[0] atgttgttggaactggcaggccaagaggccctgaaaccagcaggtgccatctatatggagaaaagcggatgtagtccatttccagtgtgttgggctaaagaatatgacagatacctagcatctagcaaaataatggcagctgcttaccttgaccccaacttgaatcacacaccaaattcgagtactaagactcacctgggtactggtatggaacgttctcctggtgcaatggagcgagtattaaaggtctttcattattttgaaagcaatagtgagccaaccacctgggccagtattatcaggcatggagatgctactgatgtcaggggcatcattcagaagatagtggacagtcacaaagtaaagcatgtggcctgctatggattccgcctcagtcacctgcggtcagaggaggttcactggcttcacgtggatatgggcgtctccagtgtgagggagaagtatgagcttgctcacccaccagaggagtggaaatatgaattgagaattcgttatttgccaaaaggatttctaaaccagtttactgaagataagccaactttgaatttcttctatcaacaggtgaagagcgattatatgttagagatagctgatcaagtggaccaggaaattgctttgaagttgggttgtctagaaatacggcgatcatactgggagatgcggggcaatgcactagaaaagaagtctaactatgaagtattagaaaaagatgttggtttaaagcgattttttcctaagagtttactggattctgtcaaggccaaaacactaagaaaactgatccaacaaacatttagacaatttgccaaccttaatagagaagaaagtattctgaaattctttgagatcctgtctccagtctacagatttgataaggaatgcttcaagtgtgctcttggttcaagctggattatttcagtggaactggcaatcggcccagaagaaggaatcagttacctaacggacaagggctgcaatcccacacatcttgctgacttcactcaagtgcaaaccattcagtattcaaacagtgaagacaaggacagaaaaggaatgctacaactaaaaatagcaggtgcacccgagcctctgacagtgacggcaccatccctaaccattgcggagaatatggctgacctaatagatgggtactgccggctggtgaatggaacctcgcagtcatttatcatcagacctcagaaagaaggtgaacgggctttgccatcaataccaaagttggccaacagcgaaaagcaaggcatgcggacacacgccgtctctgtgtcagaaacagatgattatgctgagattatagatgaagaagatacttacaccatgccctcaaccagggattatgagattcaaagagaaagaatagaacttggacgatgtattggagaaggccaatttggagatgtacatcaaggcatttatatgagtccaCTTTCTGAGGAAGAGAAAATTCAGCGCTACAGCATCCTCTCCGAGCTCTATGAGCTGATCGGCTTCCATCGCAAGTCTGCGTTCTTCAAGCGCGTGGCCGCCATGCAGTGCGTGGCCCCAAGCATCGCGGAGCCTGGGTGGAGGGCCTGCTACAAACTCCTCCTGGAAACGCTGCCCGGCTACAGTCTGTCGCTGGATCCCAAAGATTTCAGCAGAGGCACGCACAGAGGCTGGGCTGCGGTCCAGATGCGTTTGCTCCATGAATTGGTCTACGCCTCCCGAAGGATGGGGAACCCTGCCCTCTCTGTCAGACACCTGTCCTTCCTTCTACAGACCATGCTGGACTTCTTGTCGGATCAGGAAAAGAAAGATGTGGCCCAAAGCCTAGAGAACTATACGTCCAAGTGTCCTGGGACCATGGAGCCCATCGCCCTCCCTGGCGGCCTCACCCTGCCACCGGTGCCCTTCACCAAGCTTCCCATCGTCAGGCATGTGAAACTATTGAACCTTCCTGCTAGCCTCCGGCCACACAAAATGAAAAGCTTGCTGGGTCAGAACGTGTCAACCAAAAGTCCTTTCATCTATTCACCAATTATCGCACACAACCGTGGAGAAGAGCGGAACAAGAAAATAGATTTCCAGTGGGTTCAAGGAGATGTGTGTGAAGTTCAGCTGATGGTATATAACCCAATGCCGTTTGAACTTCGAGTTGAAAACATGGGGCTGCTCACCAGCGGAGTGGAGTTCGAGTCTCTCCCTGCGGCGCTTTCTCTTCCGGCTGAATCTGGTCTGTACCCAGTGACGCTCGTCGGGGTCCCGCAGACGACTGGAACGATTACTGTGAACGGTTACCATACCACGGTCTTCGGTGTGTTCAGTGACTGTTTGCTGGATAACCTGCCGGGAATAAAAACCAGTGGCTCCACAGTGGAAGTCATTCCCGCGTTGCCAAGACTGCAGATCAGCACCTCTCTGCCCAGATCTGCACATTCATTGCAACCTTCTTCTGGTGATGAAATATCTACTAATGTATCTGTCCAGCTTTACAATGGAGAAAGTCAGCAACTAATCATTAAATTGGAAAATATTGGAATGGAACCATTGGAGAAACTGGAGGTCACCTCGAAAGTTCTCACCACTAAAGAAAAATTGTATGGCGACTTCTTGAGCTGGAAGCTAGAGGAAACCCTTGCCCAGTTCCCTTTGCAGCCTGGGAAGGTGGCCACGTTCACAATCAACATCAAAGTGAAGCTGGATTTCTCCTGCCAGGAGAATCTCCTGCAGGATCTCAGTGATGATGGAATCAGTGTGAGTGGCTTTCCCCTGTCCAGTCCTTTTCGGCAGGTCGTTCGGCCCCGAGTGGAGGGCAAACCTGTGAACCCACCCGAGAGCAACAAAGCAGGCGACTACAGCCACGTGAAGACCCTGGAAGCTGTCCTGAATTTCAAATACTCTGGAGGCCCGGGCCACACTGAAGGATATTACAGGAATCTCTCCCTGGGGCTGCATGTAGAAGTCGAGCCGTCTGTATTTTTCACCCGAGTCAGCACCCTCCCAGCAACCAGTACCCGGCAGTGTCACCTGCTCCTGGATGTCTTCAACTCCACCGAGCATGAGCTGACCGTCAGCACCAGGAGCAGCGAGGCACTCATCCTGCACGCCGGTGAGTGCCAGCGAATGGCTATTCAAGTGGACAAGTTCAACTTTGAGAGTTTCCCGGAGTCCCCTGGGGAGAAGGGGCAATTTGCAAACCCCAAGCAGCTGGAGGAAGAGCGGCGGGAAGCCCGAGGCCTGGAGATCCACAGCAAGCTGGGCATCTGCTGGAGAATCCCCTCCCTGAAGCGCAGTGGCGAGGCGAGTGTGGAAGGACTCCTGAACCAGCTCGTCCTGGAGCACCTGCAGCTGGCGCCTCTGCAGTGGGATGTGCTGGTGGACGGACAGCCATGTGACCGCGAGGCTGTGGCGGCCTGCCAGGTGGGCGACCCCGTGCGCCTGGAGGTGCGGCTGACCAACCGGAGCCCGCGCAGCGTAGGGCCCTTCGCCCTCACTGTGGTCCCCTTCCAGGACCACCAGAACGGCGTGCACAACTACGACCTGCACGACACCGTCTCCTTCGTGGGCTCCAGCACCTTCTACCTCGACGCGGTGCAGCCGTCCGGCCAGTCGGCCTGCCTCGGGGCCCTCCTCTTCCTCTACACGGGAGACTTCTTCCTCCACATCCGGTTCCACGAGGACAGCACCAGCAAGGAGCTGCCACCCTCTTGGTTCTGCCTGCCCAGTGTGCACGTGTGTGCCCTGGAGGCGCAGGCCTGA MLLELAGQEALKPAGAIYMEKSGCSPFPVCWAKEYDRYLASSKIMAAAYLDPNLNHTPNSSTKTHLGTGMERSPGAMERVLKVFHYFESNSEPTTWASIIRHGDATDVRGIIQKIVDSHKVKHVACYGFRLSHLRSEEVHWLHVDMGVSSVREKYELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGCNPTHLADFTQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAENMADLIDGYCRLVNGTSQSFIIRPQKEGERALPSIPKLANSEKQGMRTHAVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVSTRSSEALILHAGECQRMAIQVDKFNFESFPESPGEKGQFANPKQLEEERREARGLEIHSKLGICWRIPSLKRSGEASVEGLLNQLVLEHLQLAPLQWDVLVDGQPCDREAVAACQVGDPVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDTVSFVGSSTFYLDAVQPSGQSACLGALLFLYTGDFFLHIRFHEDSTSKELPPSWFCLPSVHVCALEAQA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Focal adhesion kinase 1 TK FAK Q05397 FALSE NA NA NA NA NA NA TRUE Lung,Kidney,Skin,Stomach no_match TRUE Lung adenocarcinoma,Uterine Corpus Endometrial Carcinoma,Skin Cutaneous Melanoma LUNG,UTERUS,SKIN no_match 142011224|142010979,142011224|141668501|141668504,141935760|142011224|141958765 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE 140744445|140744445,141034176|141321473|141321473,140744445|140744445|140744445 FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY 5UTR-CDS,5UTR-CDS,5UTR-CDS TRUE Kidney,Esophagus KIDNEY,OESOPHAGUS no_match 140803543|140818277,140746771|140803547|140735251|140735251 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE 140024079|140024079,139901764|140147056|140050693|140007078 FALSE|FALSE,FALSE|FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32795 YTHDF3::NKAIN3 ENSG00000185728.17::ENSG00000185942.13 SW480 SRR8616059 SRR8670707 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2086 FALSE NA FALSE NA YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63187745:+ chr8:64081112-64125344:+ chr8:64100303:+ NKAIN3 ENSG00000185942.13 protein_coding + + chr8:62248591-63014000:+ chr8:62965354:+ chr8:63161150-63926559:+ chr8:63877913:+ chr8:63201983,chr8:63201985 chr8:62952164,chr8:62952151 NA NA chr8:64114541,chr8:64114543 chr8:63864723,chr8:63864710 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TFIIA|217-374|1.5e-05^YTH|420-553|1.1e-52 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.17Mb] 10 6 10 5.83 ONLY_REF_SPLICE YES_LDAS 0.1928 GT 1.8892 AG 1.7465 ENST00000621413.4 1-1743 ENST00000623646.3 604-657 chr8|+|[0]63172741-63172798[0]|[1]63175331-63175416[2]|[0]63186147-63187745[2]<==>chr8|+|[0]62965354-62965407[2] atgttctatcttgatttgactctgtttcatagagcagaggaaacaggcgaagaatcattttcagtacaaaacggttcgattcatcaaaaagatgctgtaaatgatgatgattttgagccatacttaagtagccagacaaatcagagtaacagctatccaccaatgtcagatccatacatgcctagttactatgctccatccattggatttccatattctcttggggaagcagcgtggtccacagctggagaccagcctatgccatatctgacaacctatggacaaatgagtaatggagaacatcactatataccagatggtgtatttagtcaacctggggcattaggaaatacccctccatttcttggtcaacatggatttaacttttttcctggtaatgctgatttctctacatgggggacaagtggatctcagggacaatcaacacaaagttctgcttatagtagcagttatggctatccacctagttctcttgggagagctattactgatggacaggctggatttggcaatgatactttgagtaaggtgcctggcattagcagtattgagcaaggcatgactggactgaaaattggtggtgacctgacagctgcagtgacaaaaactgtaggtacagctttgagcagcagtggtatgactagcattgcaaccaatagtgtgcccccagttagcagtgcagcacctaaaccaacctcctgggctgccattgccagaaagcctgccaaacctcaaccgaaacttaaacccaagggcaatgtgggaattgggggttctgctgtaccaccacctcctataaaacacaacatgaatattggaacttgggatgaaaaagggtcagtggtaaaggctccaccaacccaaccagttctgcctcctcaaactataatccagcagcctcagccattaattcaaccaccaccattggtgcaaagccaactgcctcaacagcagcctcaaccaccacaaccacagcagcaacaaggacctcagccacaggcccagcctcaccaagtgcagcctcaacagcagcagctgcagaatcgctgggtagctcctcgtaacaggggagcaggcttcaaccagaacaatggagcgggcagtgaaaactttggtttaggtgttgtacctgtcagtgcttcaccttctagtgtagaagtgcatcccgtgctggaaaagctaaaggccataaacaactataatcccaaagactttgattggaatctgaagaatggacgtgtgtttataattaaaagctactctgaggatgacatacatcgttccattaaatactctatctggtgtagtactgagcatggtaataagcgtttggatgcagcttaccgttccctgaatgggaaaggcccactctatttactcttcagtgtgaatggcagtggacatttttgtggagtggctgaaatgaagtctgttgtggactataatgcgtatgctggtgtctggtctcaggataagtggaagggcaaatttgaagttaaatggatctttgtcaaagatgttcccaataaccaattacggcatattcgcttagaaaataatgacaacaaaccggttaccaattcaagggacactcaagaggtacccctagaaaaagctaagcaagtgcttaaaataattgctactttcaagcataccacctcaatctttgatgactttgcacattatgaaaagcgtcaagaagaggaggaagccatgcgtaggGTCGAAATAAGTAATGACATTGAACCAGAAATGCGGCTGCTGAACTTGACTTAG MFYLDLTLFHRAEETGEESFSVQNGSIHQKDAVNDDDFEPYLSSQTNQSNSYPPMSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQHGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGMTGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIGGSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRVEISNDIEPEMRLLNLT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32803 TOMM40::CEACAM19 ENSG00000130204.13::ENSG00000186567.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 2087 FALSE NA FALSE NA TOMM40 ENSG00000130204.13 protein_coding + + chr19:44890569-44903689:+ chr19:44894066:+ chr19:45393826-45406946:+ chr19:45397323:+ CEACAM19 ENSG00000186567.14 protein_coding + + chr19:44662278-44684359:+ chr19:44672596:+ chr19:45165545-45187631:+ chr19:45175868:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Porin_3|79-317|2e-66^OMP_b-brl|184-199|0.013^OMP_b-brl|238-317|8.6e-05 V-set-PARTIAL|~56-140|1.3e-11^PapC_N|110-145|1.6e-05 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.21Mb] 109 86 109 86 ONLY_REF_SPLICE YES_LDAS 2.7062 GT 1.8256 AG 1.7968 ENST00000592434.5 1-643 ENST00000403660.3 56-903 chr19|+|[0]44891416-44891689[0]|[1]44892393-44892460[2]|[0]44892837-44892929[2]|[0]44893780-44893881[2]|[0]44893961-44894066[0]<==>chr19|+|[1]44672596-44672964[0]|[1]44676271-44676421[1]|[2]44678853-44678936[1]|[2]44680288-44680334[0]|[1]44681227-44681312[2]|[0]44682567-44682620[2]|[0]44683434-44683490[2] atggggaacgtgttggctgccagctcgccgcccgcagggccgccaccgccgcctgcgccggccctcgtggggctgccgccacctccgccctcgccgccgggcttcacgctgccgccgctgggaggcagcctgggcgccggcaccagtacgagtcgaagttcggaacggacccccggggctgcaaccgccagcgcctcaggggccgccgaggatggggcctgcggctgcctgcccaacccgggcacattcgaggagtgccaccggaagtgcaaggagctgtttcccattcagatggagggtgtcaagctcacagtcaacaaagggttgagtaaccattttcaggtcaaccacacagtagccctcagcacaatcggggagtccaactaccacttcggggtcacatatgtggggacaaagcagctgagtcccacagaggcgttccctgtactggtgggtgacatggacaacagtggcagtctcaacgctcaggtcattcaccagctgggccccggtctcaggtccaagatggccatccagacccagcagtcgaagtttgtgaactggcaggtggacggggagtatcggggctctgacttcacagcagccgtcaccctggggaacccagacgtcctcgtgggttcagCCTCAATCCTGGTCCTCTGGATGCTCCAAGGCTCCCAGGCAGCTCTCTACATCCAGAAGATTCCAGAGCAGCCTCAAAAGAACCAGGACCTTCTCCTGTCAGTCCAGGGTGTCCCAGACACCTTCCAGGACTTCAACTGGTACCTGGGGGAGGAGACGTACGGAGGCACGAGGCTATTTACCTACATCCCTGGGATACAACGGCCTCAGAGGGATGGCAGTGCCATGGGACAGCGAGACATCGTGGGCTTCCCCAATGGTTCCATGCTGCTGCGCCGCGCCCAGCCTACAGACAGTGGCACCTACCAAGTAGCCATTACCATCAACTCTGAATGGACTATGAAGGCCAAGACTGAGGTCCAGGTAGCTGAAAAGAATAAGGAGCTGCCCAGTACACACCTGCCCACCAACGCTGGGATCCTGGCGGCCACCATCATTGGATCTCTTGCTGCCGGGGCCCTTCTCATCAGCTGCATTGCCTATCTCCTGGTGACAAGGAACTGGAGGGGCCAGAGCCACAGACTGCCTGCTCCGAGGGGCCAGGGATCTCTGTCCATCTTGTGCTCGGCTGTATCCCCAGTGCCTTCAGTGACGCCCAGCACATGGATGGCGACCACAGAGAAGCCAGAATTGGGCCCTGCTCATGATGCTGGTGACAACAACATCTATGAAGTGATGCCCTCTCCAGTCCTCCTGGTGTCCCCCATCAGTGACACAAGGTCCATAAACCCAGCCCGGCCCCTGCCCACACCCCCACACCTGCAGGCGGAGCCAGAGAACCACCAGTACCAGCAGGACCTGCTAAACCCCGACCCTGCCCCCTACTGCCAGCTGGTGCCAACTTCCTGA MGNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGAATASASGAAEDGACGCLPNPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSASILVLWMLQGSQAALYIQKIPEQPQKNQDLLLSVQGVPDTFQDFNWYLGEETYGGTRLFTYIPGIQRPQRDGSAMGQRDIVGFPNGSMLLRRAQPTDSGTYQVAITINSEWTMKAKTEVQVAEKNKELPSTHLPTNAGILAATIIGSLAAGALLISCIAYLLVTRNWRGQSHRLPAPRGQGSLSILCSAVSPVPSVTPSTWMATTEKPELGPAHDAGDNNIYEVMPSPVLLVSPISDTRSINPARPLPTPPHLQAEPENHQYQQDLLNPDPAPYCQLVPTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32804 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2088 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10913877:+ chr19:10982229-11033751:+ chr19:11024553:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Laminin_N|48-297|6.5e-74^Laminin_EGF|95-107|1.1^Laminin_EGF|299-343|0.00017^Laminin_N|323-359|10^Laminin_EGF|356-412|2.1e-08^Laminin_EGF|426-465|4.7e-10^Laminin_EGF|491-531|5.8e-12^Laminin_EGF|536-581|6.1e-13^Laminin_EGF|579-628|2.2e-09^Laminin_EGF|631-681|1.3e-10^Laminin_EGF|684-722|3e-08^Laminin_EGF|1266-1314|1.8e-13^Laminin_EGF|1312-1353|0.0019^Laminin_EGF|1356-1401|3.5e-13^Laminin_EGF|1405-1453|1.1e-11^Laminin_B|1518-1652|1.6e-36^Laminin_EGF|1654-1677|1e-05^Laminin_EGF|1687-1731|1.9e-10^Laminin_EGF|1734-1784|2.7e-10^Laminin_EGF|1787-1825|0.062^EzrA|1833-1946|1.6e-06^Laminin_II|1839-1931|0.016^Laminin_I|1847-1948|1.3e-32^DUF948|1875-1933|0.0016^Laminin_I|1946-2049|4.5e-36^Laminin_II|1961-2023|0.028^EzrA|1968-2031|0.018^DUF948|1969-2020|0.39^Laminin_II|2004-2073|0.047^Laminin_II|2042-2161|2.5^EzrA|2043-2177|0.12^DUF948|2046-2107|0.042^Laminin_I|2053-2286|10^DUF948|2167-2201|0.058^EzrA|2168-2321|0.0039^Laminin_II|2192-2222|1.4^DUF948|2223-2263|0.035^Laminin_II|2232-2360|4.7e-42^DUF948|2273-2328|0.083^Laminin_G_1|2379-2514|2.2e-08^Laminin_G_2|2380-2508|1.9e-08^Laminin_G_1|2570-2686|1.2e-12^Laminin_G_2|2571-2686|2.4e-17^Laminin_G_2|2741-2846|9e-11^Laminin_G_1|2741-2813|0.00041^Laminin_G_3|2758-2853|0.0031^Laminin_G_2|2961-3079|4.8e-25^Laminin_G_1|2961-3082|6.1e-21^Laminin_G_3|2964-3082|1.6e-11^Laminin_G_2|3130-3254|7.6e-29^Laminin_G_3|3130-3230|3.7e-06^Laminin_G_1|3132-3255|1.3e-18 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr19] 94 75 94 62.4 ONLY_REF_SPLICE YES_LDAS 2.1705 GT 1.7819 AG 1.7819 ENST00000399516.7 1-5222 ENST00000327064.9 670-1827 chr18|+|[0]23689684-23689977[2]|[0]23713920-23714072[2]|[0]23747943-23748060[0]|[1]23749428-23749546[2]|[0]23750918-23751088[2]|[0]23753721-23753812[1]|[2]23758396-23758511[0]|[1]23763405-23763523[2]|[0]23773497-23773587[0]|[1]23775792-23775923[0]|[1]23777557-23777619[0]|[1]23784023-23784157[0]|[1]23810366-23810503[0]|[1]23813057-23813103[2]|[0]23814403-23814502[0]|[1]23815188-23815240[2]|[0]23815468-23815573[0]|[1]23816388-23816487[1]|[2]23819841-23819997[2]|[0]23822252-23822375[0]|[1]23824423-23824565[2]|[0]23826702-23826799[1]|[2]23827314-23827467[2]|[0]23833828-23833988[1]|[2]23836981-23837089[2]|[0]23838781-23838878[1]|[2]23839785-23839929[2]|[0]23842395-23842521[0]|[1]23842611-23842750[2]|[0]23845009-23845124[1]|[2]23846297-23846508[0]|[1]23847464-23847668[1]|[2]23857844-23857988[2]|[0]23858689-23858829[2]|[0]23861646-23861807[2]|[0]23864785-23864883[2]|[0]23867834-23867917[2]|[0]23871431-23871661[2]|[0]23876294-23876407[2]|[0]23881936-23882045[1]<==>chr19|+|[0]10913877-10914054[0]|[1]10916407-10916497[1]|[2]10916696-10916777[2]|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atggcggcggccgcgcggcctcggggtcgggcactggggccagtactgccgccgacgccgctgctcctgctggtactgcgggtgctgccagcctgcggggcgaccgctcgggatcccggggccgcggccgggctcagccttcacccgacttacttcaacctggccgaggcggcgaggatttgggccaccgccacctgcggggagaggggacccggcgaggggaggccccagcccgagctctactgcaagttggtcgggggccccaccgccccaggcagcggccacaccatccagggccagttctgtgactattgcaattctgaagaccccaggaaagcacatcctgtcaccaatgccatcgatggatctgaacgttggtggcaaagccctcccctgtcctcaggcacacagtacaacagagtcaacctcaccttggatctggggcagctcttccatgtggcctatattttaatcaaatttgcaaattctcctcgccctgatctttgggtcttggaaagatctgtagactttggaagcacctactcaccatggcaatattttgctcattctaaagtagactgtttaaaagaatttgggcgggaggcaaatatggctgtcacccgggatgatgatgtactttgtgttactgaatattcccgtattgtacctttggaaaatggtgaggttgtggtgtccttgataaacggtcgtccaggtgcaaaaaattttactttctctcacaccctgagggagtttaccaaggcaacaaacatccgcttgcgttttcttagaaccaatacgcttcttggacacctcatctccaaagcccagcgagatccaactgtcactcggcggtattattacagcataaaggacatcagcattggtgggcagtgtgtttgcaatggccatgctgaagtgtgcaatataaacaatcctgaaaaactgtttcggtgtgaatgccagcaccacacctgtggggagacgtgtgatcgctgctgcacagggtacaatcagaggcgctggcggcccgccgcttgggagcagagccacgagtgtgaagcatgcaactgccacggccatgccagcaactgttactatgatccagatgttgagcggcagcaggcaagcttgaatacccagggcatctatgctggtggaggggtctgcattaactgtcagcacaacacagctggagtaaactgtgaacagtgtgctaagggctattaccgcccttatggggttccagtggatgcccctgatggctgcatcccctgcagctgtgaccctgagcatgcggatggctgtgaacagggttcaggccgctgtcactgcaagccaaatttccacggagacaactgtgagaagtgtgcaattggatactacaatttcccattttgcttgagaattcccatttttcctgtttctacaccaagttcagaagatccagtagctggagatataaaagggtgtgactgtaatctggaaggtgttctccctgaaatatgtgatgcccacggacggtgcctgtgccgccctggggttgagggccctcgatgtgatacctgccgctctggtttctactcattccctatttgccaagcctgctggtgttcagcccttggatcctaccagatgccctgcagctcagtgactggacagtgtgaatgtcggccaggagttacaggacagcggtgtgacaggtgtctctcaggagcttatgatttcccccactgccaaggttccagcagtgcttgtgacccagctggtaccatcaactccaatttggggtattgccaatgcaagcttcatgttgaaggtcctacttgtagccgctgcaaactgttatattggaatctggacaaagaaaaccccagtggatgttcagaatgcaagtgccataaggcgggaacagtgagtggaactggagagtgtaggcagggagatggtgactgtcactgcaagtcccatgtgggtggcgattcctgcgacacctgtgaagatggatattttgctttggaaaagagcaattactttgggtgtcaagggtgtcagtgtgacattggtggggcattgtcctccatgtgcagtgggccctcgggagtgtgccagtgccgagagcatgtcgtgggaaaggtgtgccagcggcctgaaaacaactactatttcccagatttgcatcatatgaagtatgagattgaagacggcagcacacctaatgggagagaccttcgatttggatttgatccgctggcatttcctgagtttagctggagaggatatgcccaaatgacctcagtacagaatgatgtaagaataacattgaatgtagggaagtcaagtggctccttgtttcgtgttattctgagatacgttaaccctggaactgaagcagtatctggccatataactatttatccatcctggggtgctgctcaaagcaaagagatcatcttcctgccgagtaaggagccagcctttgtcactgtccctggaaatggttttgcagacccattttcaatcacaccaggaatatgggttgcttgtattaaggcagaaggagtccttctggattacctggtgctgctccccagggactactatgaagcctctgtactgcagctgccagtcacagaaccatgtgcctacgcaggacctccccaagaaaattgcttactctaccagcatttgccagtgaccagattcccctgtaccctggcttgtgaggccagacacttcctgcttgatggggagccaagacccgtggcagtgaggcagcccacacctgcacaccctgtcatggtggacctcagcgggagagaggtggaattgcatctgcggctgcgcatcccacaggttggccactacgtggttgtggtcgagtattccacggaggcagctcagctgtttgtggttgatgtgaatgtgaagagctccgggtctgttctggcaggccaggtgaacatttacagctgcaactacagtgttctctgccggagtgctgtgattgatcacatgagccgcatcgccatgtatgagctattggcagatgcagacattcagctcaagggacacatggcccgattccttctgcatcaagtttgtatcatacctattgaagaattctcagctgagtatgtgagaccacaagtccactgcattgccagttatgggcgatttgtcaatcaaagtgccacctgtgtctccttggcccatgaaactcctccaacagcattaattttggatgttctaagtggcaggcctttccctcacctgccccagcagtcgtcaccttctgttgatgttcttcctggggtcaccttgaaggcaccgcagaatcaagtgaccctgagaggacgtgtaccacacctgggccgatacgtctttgtcatccatttttaccaagcagcgcacccgacgtttcccgcgcaggtgtcggtggatggcgggtggccacgggcaggctccttccatgcctctttttgcccccatgtgcttggctgccgggatcaagtgattgccgaaggccagattgagtttgacatctcagagcctgaagtggccgcaactgtgaaggttccagaaggaaagtccttggttttggtccgtgttctagtggtgcctgcagaaaactatgactaccaaatacttcacaaaaaatccatggacaagtcactcgagtttatcaccaattgtggaaaaaacagcttttaccttgacccccagacagcctccagattctgtaagaattccgccaggtccctggtggccttttaccacaagggcgccctgccttgtgagtgccaccccactggggccaccggccctcactgcagccctgagggtgggcagtgcccatgccagcccaacgtcatcgggcggcagtgcacccgctgtgcaacaggccactacggattcccacgctgcaagccgtgcagctgtggtcggcgcctttgtgaagagatgacggggcagtgccgctgccctccccgcacggtcaggccccagtgtgaggtgtgtgagacacactcattcagcttccaccccatggccggctgcgaaggctgcaactgttccaggaggggcaccatcgaggctgccatgccggagtgtgaccgggacagcgggcagtgcagatgcaagcccagaatcacagggcggcagtgtgaccgatgtgcttccgggttttaccgctttcctgagtgtgttccctgcaattgcaacagagatgggactgagccaggagtgtgtgacccagggaccggggcttgcctctgcaaggaaaatgtagaaggcacagagtgtaatgtgtgtcgagaaggctcattccatttggacccagccaatctcaagggttgtaccagctgtttctgttttggagtaaataatcaatgtcacagctcacataagcgaaggactaagtttgtggatatgctgggctggcacctggagacagcagacagagtggacatccctgtctctttcaacccaggcagcaacagtatggtggcggatctccaggagctgcccgcaaccatccacagcgcgtcctgggtcgcacccacctcctacctgggggacaaggtttcttcatatggtggttacctcacttaccaagccaagtcctttggcttgcctggcgacatggttcttctggaaaagaagccggatgtacagctcactggtcagcacatgtccatcatctatgaggagacaaacaccccacggccagaccggctgcatcatggacgagtgcacgtggtcgagggaaacttcagacatgccagcagccgtgccccagtgtctagggaggagctgatgacagtgctgtctagactggcagatgtgcgcatccaaggcctctacttcacagagactcaaaggctcaccctgagcgaggtggggctagaggaagcctctgacacaggaagtgggcgcatagcacttgctgtggaaatctgtgcctgcccccctgcctacgctggtgactcttgtcagggttgtagccctggatactatcgggatcataaaggcttgtataccggacggtgtgttccctgcaattgcaacggacattcaaatcaatgccaggatggctcaggcatatgtgttaactgtcagcacaacaccgcgggagagcactgtgaacgctgccaggagggctactatggcaacgccgtccacggatcctgcagggcctgcccatgtcctcacactaacagGTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCGGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MAAAARPRGRALGPVLPPTPLLLLVLRVLPACGATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREANMAVTRDDDVLCVTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDPLAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFSITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPAHPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADIQLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKAPQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLVLVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHKRRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQLTGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALAVEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNRSW*RVTT*RTASWSSRARWRRCHSPSRWTSSSRSPWATCSSTSACWRATSTPRST*SPAETCFLPLVTSTLHPSRMNSSTWSSSPRPTSGTSHLSMEWTCRPSEVPRWMSISGSLWWTHLTSGS*WPSLSSTR*TS*KPKKEICTG*KSHSNSTCCIQGWSTAWLSGLTLLSSAP**PCGCPQPRQSP*PTGTRCGACSSHHCSPRQGTRSQGHVCLLPTKDRATTSVLWPRWTRPAPSPVTSWI*KTPSLDTRAQRPHPHPAPTTHLPRKTCGTRAAPTTSAAGWPWQGCRPPMT*AVLLPVAPAWATTT*FL*PTRGLSITPTPGWAP**ARGLSKGPPAPRAVVVAARVPTMQSTASSPWAAPPSPWRRPCPSRPTPCTTGA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32805 PDCD6::CCDC127 ENSG00000249915.9::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2094 TRUE 3851 TRUE 1452 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:205958:- chr5:196983-218268:- chr5:206073:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame EF-hand_10|24-49|0.0091^EF-hand_6|28-53|4.7e-08^EF-hand_1|29-53|8.7e-08^SPARC_Ca_bdg|29-50|0.045^EF-hand_7|30-88|4e-11^EF-hand_5|31-50|9.9e-08^EF-hand_8|32-50|0.0025^EF-hand_9|32-88|0.0039^EF-hand_8|40-89|5.1e-06^WWE|54-74|0.033^EF-hand_1|65-90|0.00024^EF-hand_6|66-86|0.09^SPARC_Ca_bdg|79-120|0.0056^WWE|88-114|0.003^EF-hand_7|93-152|9.4e-16^EF-hand_1|94-120|2.8e-10^EF-hand_6|94-120|9.7e-11^EF-hand_8|96-119|5.6e-06^EF-hand_10|97-116|0.044^EF-hand_5|98-117|4.4e-08^EF-hand_9|98-150|0.00028^EF-hand_8|115-151|9.5e-07^EF-hand_1|132-153|9.6e-05^EF-hand_5|133-138|2.8^EF-hand_6|134-153|0.00038^EF-hand_7-PARTIAL|158-163~|7.8e-05^EF-hand_1-PARTIAL|159-163~|0.00012^EF-hand_6-PARTIAL|159-163~|9.5e-06^EF-hand_8-PARTIAL|159-163~|0.005^EF-hand_5-PARTIAL|161-163~|0.00015^EF-hand_10-PARTIAL|161-163~|1.2 Spectrin_3-PARTIAL|~122-137|6.6e-06^FapA-PARTIAL|~122-135|0.00074 ["PDCD6:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.05Mb];LOCAL_INVERSION:+:-:[53406] 67 76 67 43.9 ONLY_REF_SPLICE YES_LDAS 1.539 GT 1.8892 AG 1.6895 ENST00000507528.5 1-163 ENST00000296824.4 122-783 chr5|+|[0]271721-271821[1]|[2]272711-272772[0]<==>chr5|-|[2]205297-205958[1] atggccgcctactcttaccgccccggccctggggccggccctgggcctgctgcaggcgcggcgctgccggaccagagcttcctgtggaacgttttccagagggtcgataaagacaggagtggagtgatatcagacaccgagcttcagcaagctctctccaacgGTTGGATTTGGTCTAGGGAGTCCCAGAAAGAAGTAGAAAAAGAGAGAGAAGCCTACCGTCGGAGAACTGCTGCTTTTCAACAGGATCTGGAAGCCAAGTACCACGCCATGATCTCAGAAAATCGGCGTGCTGTCGCTCAGTTGTCCTTGGAACTCGAAAAGGAACAAAACAGAACTGCTAGTTACCGAGAAGCCCTTATCTCTCAGGGACGCAAGTTGGTAGAAGAAAAGAAGCTTCTGGAACAGGAACGGGCCCAGGTGATGCAAGAAAAAAGACAGGTGCAGCCTTTGAGAAGTGCGTATTTGAGCTGCCTGCAAAGGGAAGAAAACTGGCAAAGGAGAGCCAGGCTTTTGCTGAAAGAATTTGAAGCTGTTCTCACAGAAAGACAGAATATCTACTGCAGTCTGTTTCTTCCTCGCAGCAAGCGGCTGGAGATAGAGAAGAGCTTACTGGTGCGAGCGTCCGTCGACCCCGTCGCCGCTGACCTAGAGATGGCAGCCGGTCTCACCGACATATTTCAGCATGATACATACTGTGGTGATGTCTGGAACACCAACAAACGCCAGAATGGCAGACTCATGTGGCTCTATCTCAAATACTGGGAACTCGTTGTCGAACTGAAGAAGTTTAAGAGAGTAGAGGAAGCCATACTAGAAAAGTAA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGWIWSRESQKEVEKEREAYRRRTAAFQQDLEAKYHAMISENRRAVAQLSLELEKEQNRTASYREALISQGRKLVEEKKLLEQERAQVMQEKRQVQPLRSAYLSCLQREENWQRRARLLLKEFEAVLTERQNIYCSLFLPRSKRLEIEKSLLVRASVDPVAADLEMAAGLTDIFQHDTYCGDVWNTNKRQNGRLMWLYLKYWELVVELKKFKRVEEAILEK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32806 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2092 TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65053238:+ chr14:65453613-65529370:+ chr14:65519956:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FUT8:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.35Mb] 63 81 63 70.44 ONLY_REF_SPLICE YES_LDAS 1.8519 GT 1.9219 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 TRUE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32807 ERBB2::STARD3 ENSG00000141736.14::ENSG00000131748.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2095 FALSE NA FALSE NA ERBB2 ENSG00000141736.14 protein_coding + + chr17:39687914-39730426:+ chr17:39693325:+ chr17:37844167-37886679:+ chr17:37849578:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39657008:+ chr17:37793343-37820454:+ chr17:37813261:+ chr17:39693841,chr17:39693842 chr17:39656954,chr17:39656952 NA NA chr17:37850094,chr17:37850095 chr17:37813207,chr17:37813205 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ERBB2:OncomapV4_panel","ERBB2:OncocartaV1_panel","ERBB2:ArcherDX_panel","ERBB2:Oncogene","ERBB2:FoundationOne_panel"];["STARD3:Oncogene"];["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_REARRANGEMENT:+:[24430] 61 41 61 41 ONLY_REF_SPLICE YES_LDAS 1.4156 GT 1.9086 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Receptor tyrosine-protein kinase erbB-2 TK EGFR P04626 FALSE NA NA NA NA NA NA TRUE Stomach,Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-erb-b2 erythroblastic leukemia viral oncogene homolog 2, neuro/glioblastoma derived oncogene homolog (avian) 1 Yes breast, ovarian, other tumour types, NSCLC, gastric epithelial oncogene, fusion amplification, missense, other, translocation FALSE NA NA NA NA NA NA NA NA NA 32808 FYTTD1::HOXA-AS2 ENSG00000122068.13::ENSG00000253552.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FYTTD1 ENSG00000122068.13 protein_coding + + chr3:197737179-197787596:+ chr3:197770244:+ chr3:197464050-197514467:+ chr3:197497115:+ HOXA-AS2 ENSG00000253552.8 lncRNA + + chr7:27107777-27134302:+ chr7:27121919:+ chr7:27147396-27173921:+ chr7:27161538:+ chr3:197773439,chr3:197773440 chr7:27120987,chr7:27120985 NA NA chr3:197500310,chr3:197500311 chr7:27160606,chr7:27160604 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr7] 58 19 58 16.21 ONLY_REF_SPLICE YES_LDAS 1.0299 GT 1.7465 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32809 SYMPK::PRKD2 ENSG00000125755.19::ENSG00000105287.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SYMPK ENSG00000125755.19 protein_coding - - chr19:45815410-45863194:- chr19:45854175:- chr19:46318668-46366452:- chr19:46357433:- PRKD2 ENSG00000105287.13 protein_coding - - chr19:46674275-46717127:- chr19:46711038:- chr19:47177532-47220384:- chr19:47214295:- chr19:45854024,chr19:45854026 chr19:46711774,chr19:46711773 NA NA chr19:46357282,chr19:46357284 chr19:47215031,chr19:47215030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PDS5-PARTIAL|53-171~|1.1e-08^Cohesin_HEAT|61-91|4.4e-05^Cnd1|67-154|1e-05^SYMPK_PTA1_N-PARTIAL|123-171~|2.5e-62 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.81Mb] 48 18 48 18 ONLY_REF_SPLICE YES_LDAS 0.916 GT 1.8892 AG 1.6729 ENST00000600237.5 1-171 ENST00000597641.1 115-222 chr19|-|[2]45854175-45854240[0]|[2]45854391-45854495[0]<==>chr19|-|[2]46710931-46711038[0] atggcgagcggcagtggagacagcgtcacccgtcggagcgtggcatcacagtttttcactcaagaggaggggccgggcatcgatggcatgaccacctcagagagggtggtggatcttctgaaccaggcggcgctgatcaccaatgactcaaagatcacagtgctcaaacagCCTCGGCCACCTTCGAGGACTTCCAGATCCGCCCGCACGCCCTCACGGTGCACTCCTATCGGGCGCCTGCCTTCTGTGATCACTGCGGGGAGATGCTCTTCGGCCTAG MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQPRPPSRTSRSARTPSRCTPIGRLPSVITAGRCSSA* FALSE FALSE NA NA TRUE hsa-mir-320e chr19:46709282-46709354:- FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase D2 CAMK PKD Q9BZL6 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32810 WDR45B::RAB40B ENSG00000141580.16::ENSG00000141542.11 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2097 TRUE 3857 TRUE 1457 WDR45B ENSG00000141580.16 protein_coding - - chr17:82614562-82648553:- chr17:82630921:- chr17:80572438-80606429:- chr17:80588797:- RAB40B ENSG00000141542.11 protein_coding - - chr17:82654973-82698698:- chr17:82664556:- chr17:80612849-80656574:- chr17:80622432:- chr17:82630779,chr17:82630784 chr17:82689098,chr17:82689100 NA NA chr17:80588655,chr17:80588660 chr17:80646974,chr17:80646976 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Ras-PARTIAL|~143-174|4.6e-45^SOCS_box|169-178|3.2^SOCS_box|189-223|1.9e-10 ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[6420] 40 33 40 24 ONLY_REF_SPLICE YES_LDAS 0.8882 GT 1.5628 AG 1.8892 ENST00000571817.5 1-244 ENST00000571995.6 143-837 chr17|-|[0]82630921-82631022[1]|[0]82643949-82644023[1]|[0]82648274-82648340[0]<==>chr17|-|[2]82657863-82658134[1]|[0]82658491-82658713[0]|[2]82659580-82659657[0]|[2]82660987-82661047[2]|[1]82664496-82664556[1] atgaacctcctgccgtgtaaccctcacggcaacgggctgctctacgccggcttcaaccaggaccacggatgctttgcgtgtgggatggaaaatggattccgagtctataacactgatccactaaaagaaaaagagaaacaagaatttctagaaggaggagttggccatgttgaaatgttatttcgctgcaactatttagctttagttggtggtggaaaaaagccgaaataccctcccaacaaagGCATCGACTACAAGACGACCACCATCCTGCTGGACGGGCGGCGGGTGAAGCTGCAGCTCTGGGATACTTCAGGCCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCCCGGGGCGCACAGGGTGTGATCCTGGTCTATGACATTGCGAACCGCTGGTCTTTTGACGGCATTGATCGATGGATTAAGGAGATCGATGAGCATGCCCCCGGAGTCCCCAAGATCCTGGTGGGGAACCGCCTGCACCTGGCGTTCAAGCGGCAGGTGCCCACGGAGCAGGCCCAGGCCTACGCCGAGCGCCTGGGCGTGACCTTCTTTGAGGTCAGCCCTCTGTGCAATTTCAACATCACAGAGTCGTTCACGGAGCTGGCCAGGATCGTGCTGCTGCGGCATGGGATGGACCGGCTCTGGCGGCCGAGCAAGGTGCTGAGCTTGCAAGACCTCTGCTGCCGGGCGGTCGTGTCCTGCACGCCGGTGCACCTGGTGGACAAGCTCCCGCTCCCCATTGCCTTAAGAAGCCACCTCAAGTCCTTCTCGATGGCCAACGGCCTGAATGCCAGGATGATGCACGGCGGTTCCTACTCCCTCACCACCAGCTCCACCCACAAAAGGAGCAGCCTCCGCAAAGTGAAGCTCGTCCGCCCCCCCCAGAGCCCCCCCAAAAACTGCACCAGAAACAGCTGCAAAATTTCTTAA MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEMLFRCNYLALVGGGKKPKYPPNKGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGSYSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32811 FUT8::FNTB ENSG00000033170.17::ENSG00000257365.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2093 TRUE 3849 TRUE 1450 FUT8 ENSG00000033170.17 protein_coding + + chr14:65410592-65744121:+ chr14:65455718:+ chr14:65877310-66210839:+ chr14:65922436:+ FNTB ENSG00000257365.8 protein_coding + + chr14:64986895-65062652:+ chr14:65061181:+ chr14:65453613-65529370:+ chr14:65527899:+ chr14:65558503,chr14:65558502 chr14:65046305,chr14:65046301 NA NA chr14:66025221,chr14:66025220 chr14:65513023,chr14:65513019 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FUT8:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr14:0.35Mb] 39 39 39 10.56 ONLY_REF_SPLICE YES_LDAS 0.6878 GT 1.9219 AG 1.4716 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma BREAST no_match 65922436 TRUE 65470967 FALSE PARTIALLY 5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32812 TKT::DCP1A ENSG00000163931.17::ENSG00000272886.6 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2096 FALSE NA FALSE NA TKT ENSG00000163931.17 protein_coding - - chr3:53224712-53256052:- chr3:53255836:- chr3:53258728-53290068:- chr3:53289852:- DCP1A ENSG00000272886.6 protein_coding - - chr3:53283429-53347586:- chr3:53312379:- chr3:53317449-53381613:- chr3:53346409:- chr3:53245225,chr3:53245230 chr3:53316779,chr3:53316778 NA NA chr3:53279241,chr3:53279246 chr3:53350806,chr3:53350805 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Transketolase_N-PARTIAL|17-107~|7.1e-47^DXP_synthase_N-PARTIAL|97-107~|6.1e-08 Cyclin_C|437-451|0.47^mRNA_decap_C|541-581|5.9e-23^Cyclin_C|541-578|0.77 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.03Mb];LOCAL_REARRANGEMENT:-:[27376] 37 38 37 38 ONLY_REF_SPLICE YES_LDAS 1.0409 GT 1.4566 AG 1.5058 ENST00000423525.6 1-107 ENST00000610213.6 372-1749 chr3|-|[1]53255836-53255942[0]<==>chr3|-|[2]53287580-53287660[0]|[2]53288065-53288283[0]|[2]53290791-53290856[0]|[2]53292069-53292827[0]|[2]53304177-53304290[0]|[2]53312241-53312379[2] atggagagctaccacaagcctgaccagcagaagctgcaggccttgaaggacacggccaaccgcctacgtatcagctccatccaggccaccactgcggcgggctctggTGTGGTAGAAGAGGAGACACGGCGATCCCAGCAAGCTGCTCGGGACAAACAGAGTCCCAGCCAGGCCAATGGCTGCAGCGACCACAGGCCCATCGACATCCTGGAGATGCTGAGCAGAGCCAAGGATGAGTATGAGAGGAATCAGATGGGTGACTCAAATATCTCCAGCCCTGGGTTACAGCCAAGCACTCAGCTCTCCAATCTGGGAAGCACCGAGACTCTAGAAGAAATGCCCTCCGGGTCACAGGATAAGTCTGCTCCATCTGGACACAAGCATCTGACGGTAGAAGAGTTATTTGGAACCTCTTTGCCAAAGGAACAACCAGCAGTTGTGGGTCTGGATTCAGAAGAAATGGAGAGGTTGCCAGGAGATGCCTCCCAGAAAGAGCCCAATTCATTCCTACCATTTCCCTTTGAGCAGTTAGGAGGAGCCCCTCAATCAGAAACCCTGGGTGTCCCTTCTGCTGCCCACCATTCAGTCCAGCCTGAAATCACCACCCCGGTGCTAATCACTCCAGCCTCCATCACACAGTCCAATGAAAAGCATGCTCCAACCTACACAATCCCGTTGAGCCCTGTTCTCAGTCCCACTCTGCCAGCTGAAGCTCCTACTGCACAGGTTCCCCCCAGCTTACCTCGAAACAGCACCATGATGCAGGCAGTGAAGACCACGCCTAGACAGAGGTCTCCACTCCTGAACCAGCCAGTCCCTGAGCTAAGCCATGCCAGTCTGATTGCCAACCAGAGCCCCTTCAGGGCCCCATTGAACGTGACGAACACAGCTGGCACATCCCTCCCAAGCGTTGATCTTCTCCAGAAACTCAGGTTGACCCCACAGCATGACCAAATACAGACACAACCACTTGGGAAAGGTGCAATGGTAGCCAGCTTTTCTCCGGCAGCTGGTCAGCTAGCCACACCTGAGAGCTTCATAGAGCCTCCCTCTAAGACAGCAGCAGCAAGAGTGGCGGCCTCAGCCTCCCTGAGCAACATGGTGCTTGCTCCCCTTCAGTCTATGCAGCAGAACCAGGATCCTGAAGTATTTGTGCAGCCTAAGGTGTTATCCAGTGCCATCCCGGTTGCAGGCGCCCCACTGGTTACTGCAACGACCACTGCAGTGTCTTCAGTCCTGCTGGCCCCAAGTGTTTTCCAGCAGACAGTTACAAGATCTTCGGACCTTGAGAGGAAAGCCAGCTCCCCTTCTCCTCTAACTATTGGAACGCCAGAAAGTCAGAGAAAGCCTTCCATTATTCTCAGCAAGTCTCAGCTCCAGGATACATTAATACATCTAATAAAGAATGATTCCAGCTTCCTCAGTACACTTCATGAAGTCTACTTGCAGGTTCTGACCAAGAACAAAGACAACCACAACCTATGA MESYHKPDQQKLQALKDTANRLRISSIQATTAAGSGVVEEETRRSQQAARDKQSPSQANGCSDHRPIDILEMLSRAKDEYERNQMGDSNISSPGLQPSTQLSNLGSTETLEEMPSGSQDKSAPSGHKHLTVEELFGTSLPKEQPAVVGLDSEEMERLPGDASQKEPNSFLPFPFEQLGGAPQSETLGVPSAAHHSVQPEITTPVLITPASITQSNEKHAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPRNSTMMQAVKTTPRQRSPLLNQPVPELSHASLIANQSPFRAPLNVTNTAGTSLPSVDLLQKLRLTPQHDQIQTQPLGKGAMVASFSPAAGQLATPESFIEPPSKTAAARVAASASLSNMVLAPLQSMQQNQDPEVFVQPKVLSSAIPVAGAPLVTATTTAVSSVLLAPSVFQQTVTRSSDLERKASSPSPLTIGTPESQRKPSIILSKSQLQDTLIHLIKNDSSFLSTLHEVYLQVLTKNKDNHNL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32813 PDCD6::CCDC127 ENSG00000249915.9::ENSG00000164366.4 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3851 TRUE 1452 PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ CCDC127 ENSG00000164366.4 protein_coding - - chr5:196868-218153:- chr5:216859:- chr5:196983-218268:- chr5:216974:- chr5:278460,chr5:278460,chr5:278458 chr5:218371,chr5:218367,chr5:218373 NA NA chr5:278575,chr5:278575,chr5:278573 chr5:218486,chr5:218482,chr5:218488 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDCD6:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.05Mb];LOCAL_INVERSION:+:-:[53406] 35 90 35 46.1 ONLY_REF_SPLICE YES_LDAS 1.1255 GT 1.8892 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32814 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2089 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23876407:+ chr18:21269417-21536186:+ chr18:21456371:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10913877:+ chr19:10982229-11033751:+ chr19:11024553:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Laminin_N|48-297|6.5e-74^Laminin_EGF|95-107|1.1^Laminin_EGF|299-343|0.00017^Laminin_N|323-359|10^Laminin_EGF|356-412|2.1e-08^Laminin_EGF|426-465|4.7e-10^Laminin_EGF|491-531|5.8e-12^Laminin_EGF|536-581|6.1e-13^Laminin_EGF|579-628|2.2e-09^Laminin_EGF|631-681|1.3e-10^Laminin_EGF|684-722|3e-08^Laminin_EGF|1266-1314|1.8e-13^Laminin_EGF|1312-1353|0.0019^Laminin_EGF|1356-1401|3.5e-13^Laminin_EGF|1405-1453|1.1e-11^Laminin_B|1518-1652|1.6e-36^Laminin_EGF|1654-1677|1e-05^Laminin_EGF|1687-1731|1.9e-10^Laminin_EGF|1734-1784|2.7e-10^Laminin_EGF|1787-1825|0.062^EzrA|1833-1946|1.6e-06^Laminin_II|1839-1931|0.016^Laminin_I|1847-1948|1.3e-32^DUF948|1875-1933|0.0016^Laminin_I|1946-2049|4.5e-36^Laminin_II|1961-2023|0.028^EzrA|1968-2031|0.018^DUF948|1969-2020|0.39^Laminin_II|2004-2073|0.047^Laminin_II|2042-2161|2.5^EzrA|2043-2177|0.12^DUF948|2046-2107|0.042^Laminin_I|2053-2286|10^DUF948|2167-2201|0.058^EzrA|2168-2321|0.0039^Laminin_II|2192-2222|1.4^DUF948|2223-2263|0.035^Laminin_II|2232-2360|4.7e-42^DUF948|2273-2328|0.083^Laminin_G_1|2379-2514|2.2e-08^Laminin_G_2|2380-2508|1.9e-08^Laminin_G_1|2570-2686|1.2e-12^Laminin_G_2|2571-2686|2.4e-17^Laminin_G_2|2741-2846|9e-11^Laminin_G_1|2741-2813|0.00041^Laminin_G_3|2758-2853|0.0031^Laminin_G_2|2961-3079|4.8e-25^Laminin_G_1|2961-3082|6.1e-21^Laminin_G_3|2964-3082|1.6e-11^Laminin_G_2|3130-3254|7.6e-29^Laminin_G_3|3130-3230|3.7e-06^Laminin_G_1|3132-3255|1.3e-18 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr19] 32 45 32 8.82 ONLY_REF_SPLICE YES_LDAS 0.5665 GT 1.8892 AG 1.7819 ENST00000399516.7 1-5112 ENST00000327064.9 670-1827 chr18|+|[0]23689684-23689977[2]|[0]23713920-23714072[2]|[0]23747943-23748060[0]|[1]23749428-23749546[2]|[0]23750918-23751088[2]|[0]23753721-23753812[1]|[2]23758396-23758511[0]|[1]23763405-23763523[2]|[0]23773497-23773587[0]|[1]23775792-23775923[0]|[1]23777557-23777619[0]|[1]23784023-23784157[0]|[1]23810366-23810503[0]|[1]23813057-23813103[2]|[0]23814403-23814502[0]|[1]23815188-23815240[2]|[0]23815468-23815573[0]|[1]23816388-23816487[1]|[2]23819841-23819997[2]|[0]23822252-23822375[0]|[1]23824423-23824565[2]|[0]23826702-23826799[1]|[2]23827314-23827467[2]|[0]23833828-23833988[1]|[2]23836981-23837089[2]|[0]23838781-23838878[1]|[2]23839785-23839929[2]|[0]23842395-23842521[0]|[1]23842611-23842750[2]|[0]23845009-23845124[1]|[2]23846297-23846508[0]|[1]23847464-23847668[1]|[2]23857844-23857988[2]|[0]23858689-23858829[2]|[0]23861646-23861807[2]|[0]23864785-23864883[2]|[0]23867834-23867917[2]|[0]23871431-23871661[2]|[0]23876294-23876407[2]<==>chr19|+|[0]10913877-10914054[0]|[1]10916407-10916497[1]|[2]10916696-10916777[2]|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atggcggcggccgcgcggcctcggggtcgggcactggggccagtactgccgccgacgccgctgctcctgctggtactgcgggtgctgccagcctgcggggcgaccgctcgggatcccggggccgcggccgggctcagccttcacccgacttacttcaacctggccgaggcggcgaggatttgggccaccgccacctgcggggagaggggacccggcgaggggaggccccagcccgagctctactgcaagttggtcgggggccccaccgccccaggcagcggccacaccatccagggccagttctgtgactattgcaattctgaagaccccaggaaagcacatcctgtcaccaatgccatcgatggatctgaacgttggtggcaaagccctcccctgtcctcaggcacacagtacaacagagtcaacctcaccttggatctggggcagctcttccatgtggcctatattttaatcaaatttgcaaattctcctcgccctgatctttgggtcttggaaagatctgtagactttggaagcacctactcaccatggcaatattttgctcattctaaagtagactgtttaaaagaatttgggcgggaggcaaatatggctgtcacccgggatgatgatgtactttgtgttactgaatattcccgtattgtacctttggaaaatggtgaggttgtggtgtccttgataaacggtcgtccaggtgcaaaaaattttactttctctcacaccctgagggagtttaccaaggcaacaaacatccgcttgcgttttcttagaaccaatacgcttcttggacacctcatctccaaagcccagcgagatccaactgtcactcggcggtattattacagcataaaggacatcagcattggtgggcagtgtgtttgcaatggccatgctgaagtgtgcaatataaacaatcctgaaaaactgtttcggtgtgaatgccagcaccacacctgtggggagacgtgtgatcgctgctgcacagggtacaatcagaggcgctggcggcccgccgcttgggagcagagccacgagtgtgaagcatgcaactgccacggccatgccagcaactgttactatgatccagatgttgagcggcagcaggcaagcttgaatacccagggcatctatgctggtggaggggtctgcattaactgtcagcacaacacagctggagtaaactgtgaacagtgtgctaagggctattaccgcccttatggggttccagtggatgcccctgatggctgcatcccctgcagctgtgaccctgagcatgcggatggctgtgaacagggttcaggccgctgtcactgcaagccaaatttccacggagacaactgtgagaagtgtgcaattggatactacaatttcccattttgcttgagaattcccatttttcctgtttctacaccaagttcagaagatccagtagctggagatataaaagggtgtgactgtaatctggaaggtgttctccctgaaatatgtgatgcccacggacggtgcctgtgccgccctggggttgagggccctcgatgtgatacctgccgctctggtttctactcattccctatttgccaagcctgctggtgttcagcccttggatcctaccagatgccctgcagctcagtgactggacagtgtgaatgtcggccaggagttacaggacagcggtgtgacaggtgtctctcaggagcttatgatttcccccactgccaaggttccagcagtgcttgtgacccagctggtaccatcaactccaatttggggtattgccaatgcaagcttcatgttgaaggtcctacttgtagccgctgcaaactgttatattggaatctggacaaagaaaaccccagtggatgttcagaatgcaagtgccataaggcgggaacagtgagtggaactggagagtgtaggcagggagatggtgactgtcactgcaagtcccatgtgggtggcgattcctgcgacacctgtgaagatggatattttgctttggaaaagagcaattactttgggtgtcaagggtgtcagtgtgacattggtggggcattgtcctccatgtgcagtgggccctcgggagtgtgccagtgccgagagcatgtcgtgggaaaggtgtgccagcggcctgaaaacaactactatttcccagatttgcatcatatgaagtatgagattgaagacggcagcacacctaatgggagagaccttcgatttggatttgatccgctggcatttcctgagtttagctggagaggatatgcccaaatgacctcagtacagaatgatgtaagaataacattgaatgtagggaagtcaagtggctccttgtttcgtgttattctgagatacgttaaccctggaactgaagcagtatctggccatataactatttatccatcctggggtgctgctcaaagcaaagagatcatcttcctgccgagtaaggagccagcctttgtcactgtccctggaaatggttttgcagacccattttcaatcacaccaggaatatgggttgcttgtattaaggcagaaggagtccttctggattacctggtgctgctccccagggactactatgaagcctctgtactgcagctgccagtcacagaaccatgtgcctacgcaggacctccccaagaaaattgcttactctaccagcatttgccagtgaccagattcccctgtaccctggcttgtgaggccagacacttcctgcttgatggggagccaagacccgtggcagtgaggcagcccacacctgcacaccctgtcatggtggacctcagcgggagagaggtggaattgcatctgcggctgcgcatcccacaggttggccactacgtggttgtggtcgagtattccacggaggcagctcagctgtttgtggttgatgtgaatgtgaagagctccgggtctgttctggcaggccaggtgaacatttacagctgcaactacagtgttctctgccggagtgctgtgattgatcacatgagccgcatcgccatgtatgagctattggcagatgcagacattcagctcaagggacacatggcccgattccttctgcatcaagtttgtatcatacctattgaagaattctcagctgagtatgtgagaccacaagtccactgcattgccagttatgggcgatttgtcaatcaaagtgccacctgtgtctccttggcccatgaaactcctccaacagcattaattttggatgttctaagtggcaggcctttccctcacctgccccagcagtcgtcaccttctgttgatgttcttcctggggtcaccttgaaggcaccgcagaatcaagtgaccctgagaggacgtgtaccacacctgggccgatacgtctttgtcatccatttttaccaagcagcgcacccgacgtttcccgcgcaggtgtcggtggatggcgggtggccacgggcaggctccttccatgcctctttttgcccccatgtgcttggctgccgggatcaagtgattgccgaaggccagattgagtttgacatctcagagcctgaagtggccgcaactgtgaaggttccagaaggaaagtccttggttttggtccgtgttctagtggtgcctgcagaaaactatgactaccaaatacttcacaaaaaatccatggacaagtcactcgagtttatcaccaattgtggaaaaaacagcttttaccttgacccccagacagcctccagattctgtaagaattccgccaggtccctggtggccttttaccacaagggcgccctgccttgtgagtgccaccccactggggccaccggccctcactgcagccctgagggtgggcagtgcccatgccagcccaacgtcatcgggcggcagtgcacccgctgtgcaacaggccactacggattcccacgctgcaagccgtgcagctgtggtcggcgcctttgtgaagagatgacggggcagtgccgctgccctccccgcacggtcaggccccagtgtgaggtgtgtgagacacactcattcagcttccaccccatggccggctgcgaaggctgcaactgttccaggaggggcaccatcgaggctgccatgccggagtgtgaccgggacagcgggcagtgcagatgcaagcccagaatcacagggcggcagtgtgaccgatgtgcttccgggttttaccgctttcctgagtgtgttccctgcaattgcaacagagatgggactgagccaggagtgtgtgacccagggaccggggcttgcctctgcaaggaaaatgtagaaggcacagagtgtaatgtgtgtcgagaaggctcattccatttggacccagccaatctcaagggttgtaccagctgtttctgttttggagtaaataatcaatgtcacagctcacataagcgaaggactaagtttgtggatatgctgggctggcacctggagacagcagacagagtggacatccctgtctctttcaacccaggcagcaacagtatggtggcggatctccaggagctgcccgcaaccatccacagcgcgtcctgggtcgcacccacctcctacctgggggacaaggtttcttcatatggtggttacctcacttaccaagccaagtcctttggcttgcctggcgacatggttcttctggaaaagaagccggatgtacagctcactggtcagcacatgtccatcatctatgaggagacaaacaccccacggccagaccggctgcatcatggacgagtgcacgtggtcgagggaaacttcagacatgccagcagccgtgccccagtgtctagggaggagctgatgacagtgctgtctagactggcagatgtgcgcatccaaggcctctacttcacagagactcaaaggctcaccctgagcgaggtggggctagaggaagcctctgacacaggaagtgggcgcatagcacttgctgtggaaatctgtgcctgcccccctgcctacgctggtgactcttgtcagggttgtagccctggatactatcgggatcataaaggcttgtataccggacggtgtgttccctgcaattgcaacggacattcaaatcaatgccaggatggctcaggcatatgtgttGTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCGGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MAAAARPRGRALGPVLPPTPLLLLVLRVLPACGATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREANMAVTRDDDVLCVTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDPLAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFSITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPAHPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADIQLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKAPQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLVLVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHKRRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQLTGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALAVEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGTTPSPPPGSHYTSPSENMWNTGSTYNLSSGMAVAGMPTAYDLSSVIASGSSVGHNNLIPLANTGIVNHTHSRMGSIMSTGIVQGSSGAQGSGGGSTSAHYAVNSQFTMGGPAISMASPMSIPTNTMHYGS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32815 WDR45B::RAB40B ENSG00000141580.16::ENSG00000141542.11 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2098 TRUE 3857 TRUE 1457 WDR45B ENSG00000141580.16 protein_coding - - chr17:82614562-82648553:- chr17:82643949:- chr17:80572438-80606429:- chr17:80601825:- RAB40B ENSG00000141542.11 protein_coding - - chr17:82654973-82698698:- chr17:82664556:- chr17:80612849-80656574:- chr17:80622432:- chr17:82630779,chr17:82630784 chr17:82689098,chr17:82689100 NA NA chr17:80588655,chr17:80588660 chr17:80646974,chr17:80646976 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Ras-PARTIAL|~143-174|4.6e-45^SOCS_box|169-178|3.2^SOCS_box|189-223|1.9e-10 ["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];LOCAL_REARRANGEMENT:-:[6420] 27 25 27 9 ONLY_REF_SPLICE YES_LDAS 0.4996 GT 1.053 AG 1.8892 ENST00000571817.5 1-142 ENST00000571995.6 143-837 chr17|-|[0]82643949-82644023[1]|[0]82648274-82648340[0]<==>chr17|-|[2]82657863-82658134[1]|[0]82658491-82658713[0]|[2]82659580-82659657[0]|[2]82660987-82661047[2]|[1]82664496-82664556[1] atgaacctcctgccgtgtaaccctcacggcaacgggctgctctacgccggcttcaaccaggaccacggatgctttgcgtgtgggatggaaaatggattccgagtctataacactgatccactaaaagaaaaagagaaacaagGCATCGACTACAAGACGACCACCATCCTGCTGGACGGGCGGCGGGTGAAGCTGCAGCTCTGGGATACTTCAGGCCAGGGAAGATTTTGTACCATATTCCGCTCCTACTCCCGGGGCGCACAGGGTGTGATCCTGGTCTATGACATTGCGAACCGCTGGTCTTTTGACGGCATTGATCGATGGATTAAGGAGATCGATGAGCATGCCCCCGGAGTCCCCAAGATCCTGGTGGGGAACCGCCTGCACCTGGCGTTCAAGCGGCAGGTGCCCACGGAGCAGGCCCAGGCCTACGCCGAGCGCCTGGGCGTGACCTTCTTTGAGGTCAGCCCTCTGTGCAATTTCAACATCACAGAGTCGTTCACGGAGCTGGCCAGGATCGTGCTGCTGCGGCATGGGATGGACCGGCTCTGGCGGCCGAGCAAGGTGCTGAGCTTGCAAGACCTCTGCTGCCGGGCGGTCGTGTCCTGCACGCCGGTGCACCTGGTGGACAAGCTCCCGCTCCCCATTGCCTTAAGAAGCCACCTCAAGTCCTTCTCGATGGCCAACGGCCTGAATGCCAGGATGATGCACGGCGGTTCCTACTCCCTCACCACCAGCTCCACCCACAAAAGGAGCAGCCTCCGCAAAGTGAAGCTCGTCCGCCCCCCCCAGAGCCCCCCCAAAAACTGCACCAGAAACAGCTGCAAAATTTCTTAA MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVPTEQAQAYAERLGVTFFEVSPLCNFNITESFTELARIVLLRHGMDRLWRPSKVLSLQDLCCRAVVSCTPVHLVDKLPLPIALRSHLKSFSMANGLNARMMHGGSYSLTTSSTHKRSSLRKVKLVRPPQSPPKNCTRNSCKIS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Stomach exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32817 ZC3H7A::BCAR4 ENSG00000122299.12::ENSG00000262117.5 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2103 FALSE NA FALSE NA ZC3H7A ENSG00000122299.12 protein_coding - - chr16:11750586-11797258:- chr16:11797124:- chr16:11844442-11891114:- chr16:11890980:- BCAR4 ENSG00000262117.5 lncRNA - - chr16:11819829-11828845:- chr16:11820297:- chr16:11913686-11922702:- chr16:11914154:- chr16:11785365,chr16:11785368 chr16:11826483,chr16:11826483 NA NA chr16:11879221,chr16:11879224 chr16:11920340,chr16:11920340 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.02Mb];LOCAL_REARRANGEMENT:-:[22562] 25 0 25 0 ONLY_REF_SPLICE YES_LDAS 0.347 GT 1.7968 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32819 STX8::USP43 ENSG00000170310.15::ENSG00000154914.17 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2099 FALSE NA FALSE NA STX8 ENSG00000170310.15 protein_coding - - chr17:9250471-9576591:- chr17:9568371:- chr17:9153788-9479908:- chr17:9471688:- USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9727954:+ chr17:9548015-9633004:+ chr17:9631271:+ chr17:9566308,chr17:9566315 chr17:9716942,chr17:9716935 NA NA chr17:9469625,chr17:9469632 chr17:9620259,chr17:9620252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TFIIS_M|14-73|1e-06 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.07Mb];LOCAL_INVERSION:-:+:[68107] 20 11 20 11 ONLY_REF_SPLICE YES_LDAS 0.4303 GT 1.4566 AG 1.8295 ENST00000573016.2 1-117 ENST00000570475.5 2321-3357 chr17|-|[2]9568371-9568470[2]|[1]9575792-9575808[0]<==>chr17|+|[1]9727954-9728990[2] atggcaccggacccctggttctccacatacgattctacttgtcaaattgcccaagaaattgctgagaaaattcaacaacgaaatcaatatgaaagaaaaggtgaaaaggcaccaaagGAGGGTTGGAGCCCAGGCGTTTGGTACGGGGCGTGAAAGGCAGAAGCATTAGCATGAAGGCACCCACCACTTCCCGAGCCAAGCAGGGACCATTCAAGACCATGCCTCTGCGGTGGTCCTTTGGATCCAAGGAGAAACCACCAGGTGCCTCCGTCGAGTTGGTGGAGTACTTGGAATCCAGACGAAGACCTCGGTCCACGAGCCAGTCCATTGTGTCGCTGTTGACGGGCACTGCGGGTGAGGATGAGAAGTCAGCATCGCCGAGGTCCAACGTCGCCCTTCCTGCTAACAGCGAAGATGGTGGGCGGGCCATTGAAAGAGGTCCAGCCGGGGTGCCCTGTCCCTCGGCTCAACCCAACCACTGTCTGGCCCCTGGAAACTCAGATGGTCCAAACACAGCAAGGAAACTCAAGGAAAATGCAGGGCAGGACATCAAGCTTCCCAGAAAGTTTGACCTGCCTCTCACTGTGATGCCTTCAGTGGAGCATGAGAAACCAGCTCGACCGGAGGGCCAGAAGGCCATGAACTGGAAGGAGAGCTTCCAGATGGGAAGCAAAAGCAGCCCACCCTCCCCCTATATGGGATTCTCTGGAAACAGCAAAGACAGTCGCCGAGGCACCTCTGAGCTAGACAGACCCCTGCAGGGGACACTCACCCTTCTGAGGTCCGTGTTTCGGAAGAAGGAGAACAGGAGGAATGAGAGGGCAGAGGTCTCTCCACAGGTGCCCCCCGTCTCCCTGGTGAGTGGCGGGCTGAGCCCTGCCATGGACGGGCAGGCTCCAGGCTCACCTCCTGCCCTCAGGATCCCAGAGGGCCTGGCCAGGGGCCTGGGCAGCCGGCTCGAGAGGGATGTCTGGTCAGCCCCCAGCTCTCTCCGCCTCCCTCGTAAAGCCAGCAGGGCCCCGAGAGGCAGTGCACTGGGCATGTCACAAAGGACTGTTCCAGGGGAGCAGGCTTCTTATGGCACCTTTCAGAGAGTCAAATATCACACTCTTTCTTTAGGTCGAAAGAAAACCTTACCGGAGTCCAGCTTTTGA MAPDPWFSTYDSTCQIAQEIAEKIQQRNQYERKGEKAPKEGWSPGVWYGA*KAEALA*RHPPLPEPSRDHSRPCLCGGPLDPRRNHQVPPSSWWSTWNPDEDLGPRASPLCRC*RALRVRMRSQHRRGPTSPFLLTAKMVGGPLKEVQPGCPVPRLNPTTVWPLETQMVQTQQGNSRKMQGRTSSFPESLTCLSL*CLQWSMRNQLDRRARRP*TGRRASRWEAKAAHPPPIWDSLETAKTVAEAPLS*TDPCRGHSPF*GPCFGRRRTGGMRGQRSLHRCPPSPW*VAG*ALPWTGRLQAHLLPSGSQRAWPGAWAAGSRGMSGQPPALSASLVKPAGPREAVHWACHKGLFQGSRLLMAPFRESNITLFL*VERKPYRSPAF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32820 AIFM1::ZNF280C ENSG00000156709.15::ENSG00000056277.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2104 FALSE NA FALSE NA AIFM1 ENSG00000156709.15 protein_coding - - chrX:130124666-130165879:- chrX:130129970:- chrX:129258641-129299853:- chrX:129263945:- ZNF280C ENSG00000056277.16 protein_coding - - chrX:130202707-130268899:- chrX:130220480:- chrX:129336681-129402873:- chrX:129354454:- chrX:130129837,chrX:130129839 chrX:130221311,chrX:130221310 NA NA chrX:129263812,chrX:129263814 chrX:129355285,chrX:129355284 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame AIF-MLS|52-122|9e-07^AIF_C|75-118|2.6^Mito_fiss_Elm1|115-170|5.3e-05^Pyr_redox_3|132-167|0.41^HI0933_like|135-164|0.055^Pyr_redox_2|136-461|3e-48^Pyr_redox|136-167|1.6^NAD_binding_9|136-166|0.18^FAD_oxidored|136-167|0.00015^NAD_binding_8|137-165|0.0054^Pyr_redox|220-247|0.071^HI0933_like|220-263|0.0046^Pyr_redox_3|221-276|0.025^Amino_oxidase|221-263|0.0049^NAD_binding_9|230-261|0.11^Pyr_redox_3|301-417|1.3e-07^Pyr_redox|303-384|3.6e-12^NAD_binding_9|305-334|0.051^NAD_binding_8|305-322|0.051^HI0933_like|332-399|0.00021^NAD_binding_9|334-399|0.0006^Amino_oxidase|344-400|4.4e-05^FAD_oxidored|349-376|4.1^PYNP_C|377-405|0.00049^AIF_C|465-603|3.1e-59^PYNP_C|577-601|0.86 none ["AIFM1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.04Mb];LOCAL_REARRANGEMENT:-:[36824] 18 4 18 4 ONLY_REF_SPLICE YES_LDAS 0.3053 GT 1.7465 AG 1.6729 ENST00000675092.1 1-1797 ENST00000370978.9 1396-2214 chrX|-|[2]130129970-130130193[1]|[0]130131675-130131799[2]|[1]130133313-130133455[0]|[2]130136045-130136185[0]|[2]130136643-130136731[1]|[0]130137078-130137185[1]|[0]130138593-130138701[0]|[2]130139795-130139871[1]|[0]130140533-130140617[0]|[2]130145479-130145569[2]|[1]130147493-130147623[0]|[2]130147752-130147876[1]|[0]130149469-130149568[0]|[2]130156461-130156603[1]|[0]130165551-130165656[0]<==>chrX|-|[2]130204977-130204992[2]|[1]130205117-130205153[1]|[0]130205297-130205415[2]|[1]130209653-130209715[2]|[1]130215193-130215333[2]|[1]130215791-130216101[0]|[2]130220349-130220480[0] atgttccggtgtggaggcctggcggcgggtgctttgaagcagaagctggtgcccttggtgcggaccgtgtgcgtccgaagcccgaggcagaggaaccggctcccaggcaacttgttccagcgatggcatgttcctctagaactccagatgacaagacaaatggctagctctggtgcatcagggggcaaaatcgataattctgtgttagtccttattgtgggcttatcaacagtaggagctggtgcctatgcctacaagactatgaaagaggatgaaaaaagatacaatgaaagaatttcagggttagggctgacaccagaacagaaacagaaaaaggccgcgttatctgcttcagaaggagaggaagttcctcaagacaaggcgccaagtcatgttcctttcctgctaattggtggaggcacagctgcttttgctgcagccagatccatccgggctcgggatcctggggccagggtactgattgtatctgaagatcctgagctgccgtacatgcgacctcctctttcaaaagaactgtggttttcagatgacccaaatgtcacaaagacactgcgattcaaacagtggaatggaaaagagagaagcatatatttccagccaccttctttctatgtctctgctcaggacctgcctcatattgagaatggtggtgtggctgtcctcactgggaagaaggtagtacagctggatgtgagagacaacatggtgaaacttaatgatggctctcaaataacctatgaaaagtgcttgattgcaacaggaggtactccaagaagtctgtctgccattgatagggctggagcagaggtgaagagtagaacaacgcttttcagaaagattggagactttagaagcttggagaagatttcacgggaagtcaaatcaattacgattatcggtgggggcttccttggtagcgaactggcctgtgctcttggcagaaaggctcgagccttgggcacagaagtgattcaactcttccccgagaaaggaaatatgggaaagatcctccccgaatacctcagcaactggaccatggaaaaagtcagacgagagggggttaaggtgatgcccaatgctattgtgcaatccgttggagtcagcagtggcaagttacttatcaagctgaaagacggcaggaaggtagaaactgaccacatagtggcagctgtgggcctggagcccaatgttgagttggccaagactggtggcctggaaatagactcagattttggtggcttccgggtaaatgcagagctacaagcacgctctaacatctgggtggcaggagatgctgcatgcttctacgatataaagttgggaaggaggcgggtagagcaccatgatcacgctgttgtgagtggaagattggctggagaaaatatgactggagctgctaagccgtactggcatcagtcaatgttctggagtgatttgggccccgatgttggctatgaagctattggtcttgtggacagtagtttgcccacagttggtgtttttgcaaaagcaactgcacaagacaaccccaaatctgccacagagcagtcagtttatttgttttgggggctggccacaggaactggtatccgatcagagagtgagacagagtccgaggcctcagaaattactattcctcccagcaccccggcagttccacaggctcccgtccagggggaggactacggcaaaggtgtcatcttctacctcagggacaaagtggtcgtggggattgtgctatggaacatctttaaccgaatgccaatagcaaggaagAAAAAAGGAGTTCATCGTTGCCCAAAATGCAGACTACAATTTTTGACCAGCAAGGAGAAAGCTGAACATAAGGCGCAGCATCGTACATTTATAAAGCCTAAAGAACTAGAAGGATTGCCTCCTGGAGCAAAAGTTACTATTCGAGCTTCACTTGGACCTCTCCAGTCAAAATTACCAACTGCACCTTTCGGTTGCGCTCCAGGCACTTCTTTTCTTCAGGTCACACCTCCGACATCTCAAAATACAACTGCTAGAAATCCTAGAAAATCTAATGCCAGTAGATCTAAGACAAGTAAGCTTCATGCAACTACATCCACTGCAAGTAAAGTTAATACAAGTAAGCCAAGGGGACGTATAGCTAAGTCCAAAGCAAAACCCTCTTACAAGCAAAAGCGACAGCGCAACAGAAAAAATAAAATGAGCCTTGCTTTGAAGAACATAAGGTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAGCTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAGGGGCATTACTCTAGTGTGCCTTAAATGTGATTTCCTAGCTGATTCTTCCGGCTTAGATCGTATGGCTAAACACTTAAGTCAACGTAAAACTCATACTTGCCAAGTTATAATAGAGAATGTTTCCAAAAGTACCTCAACTTCTGAACCCACTACTGGCTGCTCATTGAAATAG MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGASGGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSVYLFWGLATGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKKKGVHRCPKCRLQFLTSKEKAEHKAQHRTFIKPKELEGLPPGAKVTIRASLGPLQSKLPTAPFGCAPGTSFLQVTPPTSQNTTARNPRKSNASRSKTSKLHATTSTASKVNTSKPRGRIAKSKAKPSYKQKRQRNRKNKMSLALKNIRCRRGIHKCIECHSKIKDFASHFSIYIHCSFCKYNTNCNKAFVNHMMSSHSNHPGKRFCIFKKHSGTLRGITLVCLKCDFLADSSGLDRMAKHLSQRKTHTCQVIIENVSKSTSTSEPTTGCSLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32822 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2101 TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70083507:- chr2:70187236-70330352:- chr2:70310639:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.05Mb];LOCAL_REARRANGEMENT:-:[46660] 16 18 16 12.41 ONLY_REF_SPLICE YES_LDAS 0.3943 GT 1.6402 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32824 PIR::ITGB4 ENSG00000087842.11::ENSG00000132470.14 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 2113 FALSE NA FALSE NA PIR ENSG00000087842.11 protein_coding - - chrX:15384799-15493564:- chrX:15425906:- chrX:15402921-15511687:- chrX:15444029:- ITGB4 ENSG00000132470.14 protein_coding + + chr17:75721328-75757818:+ chr17:75740982:+ chr17:73717408-73753899:+ chr17:73737063:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pirin|22-118|8.5e-34^Cupin_2|52-96|0.00061^Pirin_C|60-74|2.4^Pirin_C|143-160|0.33^Pirin_C|171-277|2.5e-37^Cupin_2|174-233|0.00036 none ["ITGB4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chrX--chr17] 15 0 15 0 ONLY_REF_SPLICE YES_LDAS 0.2082 GT 1.7819 AG 1.8062 ENST00000380420.10 1-565 ENST00000200181.8 2610-5469 chrX|-|[0]15425906-15425990[0]|[2]15455848-15456054[0]|[2]15459657-15459740[0]|[2]15479729-15479821[0]|[2]15491162-15491257[0]<==>chr17|+|[2]75740982-75741005[1]|[2]75742341-75742489[0]|[1]75742582-75742761[0]|[1]75743713-75743861[2]|[0]75748841-75749045[0]|[1]75750111-75750268[2]|[0]75750680-75750860[0]|[1]75750974-75751111[0]|[1]75752174-75752356[0]|[1]75752446-75752577[0]|[1]75753765-75753974[0]|[1]75754576-75754815[0]|[1]75755701-75755850[0]|[1]75756429-75756617[0]|[1]75756704-75756859[0]|[1]75756943-75757107[0]|[1]75757200-75757310[0]|[1]75757416-75757555[2] atggggtcctccaagaaagttactctctcagtgctcagccgggagcagtcggaaggggttggagcgagggtccggagaagcattggcagacccgagttaaaaaatctggatccgtttttactgtttgatgaatttaaaggaggtagaccaggaggatttcctgatcatccacatcgaggttttgaaacagtatcctacctcctggaagggggcagcatggcccatgaagacttctgtggacacactggtaaaatgaacccaggagatttgcagtggatgactgcgggccggggcattctgcacgctgagatgccttgctcagaggagccagcccatggcctacaactgtgggttaatttgaggagctcagagaagatggtggagcctcagtaccaggaactgaaaagtgaagaaatccctaaacccagtaaggatggtgtgacagttgctgtcatttctggagaagccctgggaataaagtccaaggtttacactcgcacaccaaccttatatttggacttcaaattggacccaggagccaaacattcccaacctatccctaaagGCAGCAGCCCAATGCCGGGAAAAAGCAAGACCACACCATTGTGGACACAGTGCTGATGGCGCCCCGCTCGGCCAAGCCGGCCCTGCTGAAGCTTACAGAGAAGCAGGTGGAACAGAGGGCCTTCCACGACCTCAAGGTGGCCCCCGGCTACTACACCCTCACTGCAGACCAGGACGCCCGGGGCATGGTGGAGTTCCAGGAGGGCGTGGAGCTGGTGGACGTACGGGTGCCCCTCTTTATCCGGCCTGAGGATGACGACGAGAAGCAGCTGCTGGTGGAGGCCATCGACGTGCCCGCAGGCACTGCCACCCTCGGCCGCCGCCTGGTAAACATCACCATCATCAAGGAGCAAGCCAGAGACGTGGTGTCCTTTGAGCAGCCTGAGTTCTCGGTCAGCCGCGGGGACCAGGTGGCCCGCATCCCTGTCATCCGGCGTGTCCTGGACGGCGGGAAGTCCCAGGTCTCCTACCGCACACAGGATGGCACCGCGCAGGGCAACCGGGACTACATCCCCGTGGAGGGTGAGCTGCTGTTCCAGCCTGGGGAGGCCTGGAAAGAGCTGCAGGTGAAGCTCCTGGAGCTGCAAGAAGTTGACTCCCTCCTGCGGGGCCGCCAGGTCCGCCGTTTCCACGTCCAGCTCAGCAACCCTAAGTTTGGGGCCCACCTGGGCCAGCCCCACTCCACCACCATCATCATCAGGGACCCAGATGAACTGGACCGGAGCTTCACGAGTCAGATGTTGTCATCACAGCCACCCCCTCACGGCGACCTGGGCGCCCCGCAGAACCCCAATGCTAAGGCCGCTGGGTCCAGGAAGATCCATTTCAACTGGCTGCCCCCTTCTGGCAAGCCAATGGGGTACAGGGTAAAGTACTGGATTCAGGGTGACTCCGAATCCGAAGCCCACCTGCTCGACAGCAAGGTGCCCTCAGTGGAGCTCACCAACCTGTACCCGTATTGCGACTATGAGATGAAGGTGTGCGCCTACGGGGCTCAGGGCGAGGGACCCTACAGCTCCCTGGTGTCCTGCCGCACCCACCAGGAAGTGCCCAGCGAGCCAGGGCGTCTGGCCTTCAATGTCGTCTCCTCCACGGTGACCCAGCTGAGCTGGGCTGAGCCGGCTGAGACCAACGGTGAGATCACAGCCTACGAGGTCTGCTATGGCCTGGTCAACGATGACAACCGACCTATTGGGCCCATGAAGAAAGTGCTGGTTGACAACCCTAAGAACCGGATGCTGCTTATTGAGAACCTTCGGGAGTCCCAGCCCTACCGCTACACGGTGAAGGCGCGCAACGGGGCCGGCTGGGGGCCTGAGCGGGAGGCCATCATCAACCTGGCCACCCAGCCCAAGAGGCCCATGTCCATCCCCATCATCCCTGACATCCCTATCGTGGACGCCCAGAGCGGGGAGGACTACGACAGCTTCCTTATGTACAGCGATGACGTTCTACGCTCTCCATCGGGCAGCCAGAGGCCCAGCGTCTCCGATGACACTGGCTGCGGCTGGAAGTTCGAGCCCCTGCTGGGGGAGGAGCTGGACCTGCGGCGCGTCACGTGGCGGCTGCCCCCGGAGCTCATCCCGCGCCTGTCGGCCAGCAGCGGGCGCTCCTCCGACGCCGAGGCGCCCCACGGGCCCCCGGACGACGGCGGCGCGGGCGGGAAGGGCGGCAGCCTGCCCCGCAGTGCGACACCCGGGCCCCCCGGAGAGCACCTGGTGAATGGCCGGATGGACTTTGCCTTCCCGGGCAGCACCAACTCCCTGCACAGGATGACCACGACCAGTGCTGCTGCCTATGGCACCCACCTGAGCCCACACGTGCCCCACCGCGTGCTAAGCACATCCTCCACCCTCACACGGGACTACAACTCACTGACCCGCTCAGAACACTCACACTCGACCACACTGCCCAGGGACTACTCCACCCTCACCTCCGTCTCCTCCCACGACTCTCGCCTGACTGCTGGTGTGCCCGACACGCCCACCCGCCTGGTGTTCTCTGCCCTGGGGCCCACATCTCTCAGAGTGAGCTGGCAGGAGCCGCGGTGCGAGCGGCCGCTGCAGGGCTACAGTGTGGAGTACCAGCTGCTGAACGGCGGTGAGCTGCATCGGCTCAACATCCCCAACCCTGCCCAGACCTCGGTGGTGGTGGAAGACCTCCTGCCCAACCACTCCTACGTGTTCCGCGTGCGGGCCCAGAGCCAGGAAGGCTGGGGCCGAGAGCGTGAGGGTGTCATCACCATTGAATCCCAGGTGCACCCGCAGAGCCCACTGTGTCCCCTGCCAGGCTCCGCCTTCACTTTGAGCACTCCCAGTGCCCCAGGCCCGCTGGTGTTCACTGCCCTGAGCCCAGACTCGCTGCAGCTGAGCTGGGAGCGGCCACGGAGGCCCAATGGGGATATCGTCGGCTACCTGGTGACCTGTGAGATGGCCCAAGGAGGAGGGCCAGCCACCGCATTCCGGGTGGATGGAGACAGCCCCGAGAGCCGGCTGACCGTGCCGGGCCTCAGCGAGAACGTGCCCTACAAGTTCAAGGTGCAGGCCAGGACCACTGAGGGCTTCGGGCCAGAGCGCGAGGGCATCATCACCATAGAGTCCCAGGATGGAGGACCCTTCCCGCAGCTGGGCAGCCGTGCCGGGCTCTTCCAGCACCCGCTGCAAAGCGAGTACAGCAGCATCACCACCACCCACACCAGCGCCACCGAGCCCTTCCTAGTGGATGGGCTGACCCTGGGGGCCCAGCACCTGGAGGCAGGCGGCTCCCTCACCCGGCATGTGACCCAGGAGTTTGTGAGCCGGACACTGACCACCAGCGGAACCCTTAGCACCCACATGGACCAACAGTTCTTCCAAACTTGA MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGSSPMPGKSKTTPLWTQC*WRPARPSRPC*SLQRSRWNRGPSTTSRWPPATTPSLQTRTPGAWWSSRRAWSWWTYGCPSLSGLRMTTRSSCWWRPSTCPQALPPSAAAW*TSPSSRSKPETWCPLSSLSSRSAAGTRWPASLSSGVSWTAGSPRSPTAHRMAPRRATGTTSPWRVSCCSSLGRPGKSCR*SSWSCKKLTPSCGAARSAVSTSSSATLSLGPTWASPTPPPSSSGTQMNWTGASRVRCCHHSHPLTATWAPRRTPMLRPLGPGRSISTGCPLLASQWGTG*STGFRVTPNPKPTCSTARCPQWSSPTCTRIATMR*RCAPTGLRARDPTAPWCPAAPTRKCPASQGVWPSMSSPPR*PS*AGLSRLRPTVRSQPTRSAMAWSTMTTDLLGP*RKCWLTTLRTGCCLLRTFGSPSPTATR*RRATGPAGGLSGRPSSTWPPSPRGPCPSPSSLTSLSWTPRAGRTTTASLCTAMTFYALHRAARGPASPMTLAAAGSSSPCWGRSWTCGASRGGCPRSSSRACRPAAGAPPTPRRPTGPRTTAARAGRAAACPAVRHPGPPESTW*MAGWTLPSRAAPTPCTG*PRPVLLPMAPT*AHTCPTAC*AHPPPSHGTTTH*PAQNTHTRPHCPGTTPPSPPSPPTTLA*LLVCPTRPPAWCSLPWGPHLSE*AGRSRGASGRCRATVWSTSC*TAVSCIGSTSPTLPRPRWWWKTSCPTTPTCSACGPRARKAGAESVRVSSPLNPRCTRRAHCVPCQAPPSL*ALPVPQARWCSLP*AQTRCS*AGSGHGGPMGISSATW*PVRWPKEEGQPPHSGWMETAPRAG*PCRASARTCPTSSRCRPGPLRASGQSARASSP*SPRMEDPSRSWAAVPGSSSTRCKASTAASPPPTPAPPSPS*WMG*PWGPSTWRQAAPSPGM*PRSL*AGH*PPAEPLAPTWTNSSSKL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32825 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2091 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23876407:+ chr18:21269417-21536186:+ chr18:21456371:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10919595:+ chr19:10982229-11033751:+ chr19:11030271:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Laminin_N|48-297|6.5e-74^Laminin_EGF|95-107|1.1^Laminin_EGF|299-343|0.00017^Laminin_N|323-359|10^Laminin_EGF|356-412|2.1e-08^Laminin_EGF|426-465|4.7e-10^Laminin_EGF|491-531|5.8e-12^Laminin_EGF|536-581|6.1e-13^Laminin_EGF|579-628|2.2e-09^Laminin_EGF|631-681|1.3e-10^Laminin_EGF|684-722|3e-08^Laminin_EGF|1266-1314|1.8e-13^Laminin_EGF|1312-1353|0.0019^Laminin_EGF|1356-1401|3.5e-13^Laminin_EGF|1405-1453|1.1e-11^Laminin_B|1518-1652|1.6e-36^Laminin_EGF|1654-1677|1e-05^Laminin_EGF|1687-1731|1.9e-10^Laminin_EGF|1734-1784|2.7e-10^Laminin_EGF|1787-1825|0.062^EzrA|1833-1946|1.6e-06^Laminin_II|1839-1931|0.016^Laminin_I|1847-1948|1.3e-32^DUF948|1875-1933|0.0016^Laminin_I|1946-2049|4.5e-36^Laminin_II|1961-2023|0.028^EzrA|1968-2031|0.018^DUF948|1969-2020|0.39^Laminin_II|2004-2073|0.047^Laminin_II|2042-2161|2.5^EzrA|2043-2177|0.12^DUF948|2046-2107|0.042^Laminin_I|2053-2286|10^DUF948|2167-2201|0.058^EzrA|2168-2321|0.0039^Laminin_II|2192-2222|1.4^DUF948|2223-2263|0.035^Laminin_II|2232-2360|4.7e-42^DUF948|2273-2328|0.083^Laminin_G_1|2379-2514|2.2e-08^Laminin_G_2|2380-2508|1.9e-08^Laminin_G_1|2570-2686|1.2e-12^Laminin_G_2|2571-2686|2.4e-17^Laminin_G_2|2741-2846|9e-11^Laminin_G_1|2741-2813|0.00041^Laminin_G_3|2758-2853|0.0031^Laminin_G_2|2961-3079|4.8e-25^Laminin_G_1|2961-3082|6.1e-21^Laminin_G_3|2964-3082|1.6e-11^Laminin_G_2|3130-3254|7.6e-29^Laminin_G_3|3130-3230|3.7e-06^Laminin_G_1|3132-3255|1.3e-18 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr19] 14 11 14 0.71 ONLY_REF_SPLICE YES_LDAS 0.2042 GT 1.8892 AG 1.9329 ENST00000399516.7 1-5112 ENST00000327064.9 1021-1827 chr18|+|[0]23689684-23689977[2]|[0]23713920-23714072[2]|[0]23747943-23748060[0]|[1]23749428-23749546[2]|[0]23750918-23751088[2]|[0]23753721-23753812[1]|[2]23758396-23758511[0]|[1]23763405-23763523[2]|[0]23773497-23773587[0]|[1]23775792-23775923[0]|[1]23777557-23777619[0]|[1]23784023-23784157[0]|[1]23810366-23810503[0]|[1]23813057-23813103[2]|[0]23814403-23814502[0]|[1]23815188-23815240[2]|[0]23815468-23815573[0]|[1]23816388-23816487[1]|[2]23819841-23819997[2]|[0]23822252-23822375[0]|[1]23824423-23824565[2]|[0]23826702-23826799[1]|[2]23827314-23827467[2]|[0]23833828-23833988[1]|[2]23836981-23837089[2]|[0]23838781-23838878[1]|[2]23839785-23839929[2]|[0]23842395-23842521[0]|[1]23842611-23842750[2]|[0]23845009-23845124[1]|[2]23846297-23846508[0]|[1]23847464-23847668[1]|[2]23857844-23857988[2]|[0]23858689-23858829[2]|[0]23861646-23861807[2]|[0]23864785-23864883[2]|[0]23867834-23867917[2]|[0]23871431-23871661[2]|[0]23876294-23876407[2]<==>chr19|+|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atggcggcggccgcgcggcctcggggtcgggcactggggccagtactgccgccgacgccgctgctcctgctggtactgcgggtgctgccagcctgcggggcgaccgctcgggatcccggggccgcggccgggctcagccttcacccgacttacttcaacctggccgaggcggcgaggatttgggccaccgccacctgcggggagaggggacccggcgaggggaggccccagcccgagctctactgcaagttggtcgggggccccaccgccccaggcagcggccacaccatccagggccagttctgtgactattgcaattctgaagaccccaggaaagcacatcctgtcaccaatgccatcgatggatctgaacgttggtggcaaagccctcccctgtcctcaggcacacagtacaacagagtcaacctcaccttggatctggggcagctcttccatgtggcctatattttaatcaaatttgcaaattctcctcgccctgatctttgggtcttggaaagatctgtagactttggaagcacctactcaccatggcaatattttgctcattctaaagtagactgtttaaaagaatttgggcgggaggcaaatatggctgtcacccgggatgatgatgtactttgtgttactgaatattcccgtattgtacctttggaaaatggtgaggttgtggtgtccttgataaacggtcgtccaggtgcaaaaaattttactttctctcacaccctgagggagtttaccaaggcaacaaacatccgcttgcgttttcttagaaccaatacgcttcttggacacctcatctccaaagcccagcgagatccaactgtcactcggcggtattattacagcataaaggacatcagcattggtgggcagtgtgtttgcaatggccatgctgaagtgtgcaatataaacaatcctgaaaaactgtttcggtgtgaatgccagcaccacacctgtggggagacgtgtgatcgctgctgcacagggtacaatcagaggcgctggcggcccgccgcttgggagcagagccacgagtgtgaagcatgcaactgccacggccatgccagcaactgttactatgatccagatgttgagcggcagcaggcaagcttgaatacccagggcatctatgctggtggaggggtctgcattaactgtcagcacaacacagctggagtaaactgtgaacagtgtgctaagggctattaccgcccttatggggttccagtggatgcccctgatggctgcatcccctgcagctgtgaccctgagcatgcggatggctgtgaacagggttcaggccgctgtcactgcaagccaaatttccacggagacaactgtgagaagtgtgcaattggatactacaatttcccattttgcttgagaattcccatttttcctgtttctacaccaagttcagaagatccagtagctggagatataaaagggtgtgactgtaatctggaaggtgttctccctgaaatatgtgatgcccacggacggtgcctgtgccgccctggggttgagggccctcgatgtgatacctgccgctctggtttctactcattccctatttgccaagcctgctggtgttcagcccttggatcctaccagatgccctgcagctcagtgactggacagtgtgaatgtcggccaggagttacaggacagcggtgtgacaggtgtctctcaggagcttatgatttcccccactgccaaggttccagcagtgcttgtgacccagctggtaccatcaactccaatttggggtattgccaatgcaagcttcatgttgaaggtcctacttgtagccgctgcaaactgttatattggaatctggacaaagaaaaccccagtggatgttcagaatgcaagtgccataaggcgggaacagtgagtggaactggagagtgtaggcagggagatggtgactgtcactgcaagtcccatgtgggtggcgattcctgcgacacctgtgaagatggatattttgctttggaaaagagcaattactttgggtgtcaagggtgtcagtgtgacattggtggggcattgtcctccatgtgcagtgggccctcgggagtgtgccagtgccgagagcatgtcgtgggaaaggtgtgccagcggcctgaaaacaactactatttcccagatttgcatcatatgaagtatgagattgaagacggcagcacacctaatgggagagaccttcgatttggatttgatccgctggcatttcctgagtttagctggagaggatatgcccaaatgacctcagtacagaatgatgtaagaataacattgaatgtagggaagtcaagtggctccttgtttcgtgttattctgagatacgttaaccctggaactgaagcagtatctggccatataactatttatccatcctggggtgctgctcaaagcaaagagatcatcttcctgccgagtaaggagccagcctttgtcactgtccctggaaatggttttgcagacccattttcaatcacaccaggaatatgggttgcttgtattaaggcagaaggagtccttctggattacctggtgctgctccccagggactactatgaagcctctgtactgcagctgccagtcacagaaccatgtgcctacgcaggacctccccaagaaaattgcttactctaccagcatttgccagtgaccagattcccctgtaccctggcttgtgaggccagacacttcctgcttgatggggagccaagacccgtggcagtgaggcagcccacacctgcacaccctgtcatggtggacctcagcgggagagaggtggaattgcatctgcggctgcgcatcccacaggttggccactacgtggttgtggtcgagtattccacggaggcagctcagctgtttgtggttgatgtgaatgtgaagagctccgggtctgttctggcaggccaggtgaacatttacagctgcaactacagtgttctctgccggagtgctgtgattgatcacatgagccgcatcgccatgtatgagctattggcagatgcagacattcagctcaagggacacatggcccgattccttctgcatcaagtttgtatcatacctattgaagaattctcagctgagtatgtgagaccacaagtccactgcattgccagttatgggcgatttgtcaatcaaagtgccacctgtgtctccttggcccatgaaactcctccaacagcattaattttggatgttctaagtggcaggcctttccctcacctgccccagcagtcgtcaccttctgttgatgttcttcctggggtcaccttgaaggcaccgcagaatcaagtgaccctgagaggacgtgtaccacacctgggccgatacgtctttgtcatccatttttaccaagcagcgcacccgacgtttcccgcgcaggtgtcggtggatggcgggtggccacgggcaggctccttccatgcctctttttgcccccatgtgcttggctgccgggatcaagtgattgccgaaggccagattgagtttgacatctcagagcctgaagtggccgcaactgtgaaggttccagaaggaaagtccttggttttggtccgtgttctagtggtgcctgcagaaaactatgactaccaaatacttcacaaaaaatccatggacaagtcactcgagtttatcaccaattgtggaaaaaacagcttttaccttgacccccagacagcctccagattctgtaagaattccgccaggtccctggtggccttttaccacaagggcgccctgccttgtgagtgccaccccactggggccaccggccctcactgcagccctgagggtgggcagtgcccatgccagcccaacgtcatcgggcggcagtgcacccgctgtgcaacaggccactacggattcccacgctgcaagccgtgcagctgtggtcggcgcctttgtgaagagatgacggggcagtgccgctgccctccccgcacggtcaggccccagtgtgaggtgtgtgagacacactcattcagcttccaccccatggccggctgcgaaggctgcaactgttccaggaggggcaccatcgaggctgccatgccggagtgtgaccgggacagcgggcagtgcagatgcaagcccagaatcacagggcggcagtgtgaccgatgtgcttccgggttttaccgctttcctgagtgtgttccctgcaattgcaacagagatgggactgagccaggagtgtgtgacccagggaccggggcttgcctctgcaaggaaaatgtagaaggcacagagtgtaatgtgtgtcgagaaggctcattccatttggacccagccaatctcaagggttgtaccagctgtttctgttttggagtaaataatcaatgtcacagctcacataagcgaaggactaagtttgtggatatgctgggctggcacctggagacagcagacagagtggacatccctgtctctttcaacccaggcagcaacagtatggtggcggatctccaggagctgcccgcaaccatccacagcgcgtcctgggtcgcacccacctcctacctgggggacaaggtttcttcatatggtggttacctcacttaccaagccaagtcctttggcttgcctggcgacatggttcttctggaaaagaagccggatgtacagctcactggtcagcacatgtccatcatctatgaggagacaaacaccccacggccagaccggctgcatcatggacgagtgcacgtggtcgagggaaacttcagacatgccagcagccgtgccccagtgtctagggaggagctgatgacagtgctgtctagactggcagatgtgcgcatccaaggcctctacttcacagagactcaaaggctcaccctgagcgaggtggggctagaggaagcctctgacacaggaagtgggcgcatagcacttgctgtggaaatctgtgcctgcccccctgcctacgctggtgactcttgtcagggttgtagccctggatactatcgggatcataaaggcttgtataccggacggtgtgttccctgcaattgcaacggacattcaaatcaatgccaggatggctcaggcatatgtgttGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MAAAARPRGRALGPVLPPTPLLLLVLRVLPACGATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREANMAVTRDDDVLCVTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDPLAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFSITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPAHPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADIQLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKAPQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLVLVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHKRRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQLTGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALAVEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYTGTTPSPPPGSHYTSPSENMWNTGSTYNLSSGMAVAGMPTAYDLSSVIASGSSVGHNNLIPLANTGIVNHTHSRMGSIMSTGIVQGSSGAQGSGGGSTSAHYAVNSQFTMGGPAISMASPMSIPTNTMHYGS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32826 LAMA3::CARM1 ENSG00000053747.17::ENSG00000142453.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2090 TRUE 3848 TRUE 1449 LAMA3 ENSG00000053747.17 protein_coding + + chr18:23689453-23956222:+ chr18:23882045:+ chr18:21269417-21536186:+ chr18:21462009:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10916407:+ chr19:10982229-11033751:+ chr19:11027083:+ chr18:23884332,chr18:23884332 chr19:10912566,chr19:10912563 NA NA chr18:21464296,chr18:21464296 chr19:11023242,chr19:11023239 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Laminin_N|48-297|6.5e-74^Laminin_EGF|95-107|1.1^Laminin_EGF|299-343|0.00017^Laminin_N|323-359|10^Laminin_EGF|356-412|2.1e-08^Laminin_EGF|426-465|4.7e-10^Laminin_EGF|491-531|5.8e-12^Laminin_EGF|536-581|6.1e-13^Laminin_EGF|579-628|2.2e-09^Laminin_EGF|631-681|1.3e-10^Laminin_EGF|684-722|3e-08^Laminin_EGF|1266-1314|1.8e-13^Laminin_EGF|1312-1353|0.0019^Laminin_EGF|1356-1401|3.5e-13^Laminin_EGF|1405-1453|1.1e-11^Laminin_B|1518-1652|1.6e-36^Laminin_EGF|1654-1677|1e-05^Laminin_EGF|1687-1731|1.9e-10^Laminin_EGF|1734-1784|2.7e-10^Laminin_EGF|1787-1825|0.062^EzrA|1833-1946|1.6e-06^Laminin_II|1839-1931|0.016^Laminin_I|1847-1948|1.3e-32^DUF948|1875-1933|0.0016^Laminin_I|1946-2049|4.5e-36^Laminin_II|1961-2023|0.028^EzrA|1968-2031|0.018^DUF948|1969-2020|0.39^Laminin_II|2004-2073|0.047^Laminin_II|2042-2161|2.5^EzrA|2043-2177|0.12^DUF948|2046-2107|0.042^Laminin_I|2053-2286|10^DUF948|2167-2201|0.058^EzrA|2168-2321|0.0039^Laminin_II|2192-2222|1.4^DUF948|2223-2263|0.035^Laminin_II|2232-2360|4.7e-42^DUF948|2273-2328|0.083^Laminin_G_1|2379-2514|2.2e-08^Laminin_G_2|2380-2508|1.9e-08^Laminin_G_1|2570-2686|1.2e-12^Laminin_G_2|2571-2686|2.4e-17^Laminin_G_2|2741-2846|9e-11^Laminin_G_1|2741-2813|0.00041^Laminin_G_3|2758-2853|0.0031^Laminin_G_2|2961-3079|4.8e-25^Laminin_G_1|2961-3082|6.1e-21^Laminin_G_3|2964-3082|1.6e-11^Laminin_G_2|3130-3254|7.6e-29^Laminin_G_3|3130-3230|3.7e-06^Laminin_G_1|3132-3255|1.3e-18 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr19] 14 36 14 3.07 ONLY_REF_SPLICE YES_LDAS 0.2369 GT 1.7819 AG 1.9086 ENST00000399516.7 1-5222 ENST00000327064.9 848-1827 chr18|+|[0]23689684-23689977[2]|[0]23713920-23714072[2]|[0]23747943-23748060[0]|[1]23749428-23749546[2]|[0]23750918-23751088[2]|[0]23753721-23753812[1]|[2]23758396-23758511[0]|[1]23763405-23763523[2]|[0]23773497-23773587[0]|[1]23775792-23775923[0]|[1]23777557-23777619[0]|[1]23784023-23784157[0]|[1]23810366-23810503[0]|[1]23813057-23813103[2]|[0]23814403-23814502[0]|[1]23815188-23815240[2]|[0]23815468-23815573[0]|[1]23816388-23816487[1]|[2]23819841-23819997[2]|[0]23822252-23822375[0]|[1]23824423-23824565[2]|[0]23826702-23826799[1]|[2]23827314-23827467[2]|[0]23833828-23833988[1]|[2]23836981-23837089[2]|[0]23838781-23838878[1]|[2]23839785-23839929[2]|[0]23842395-23842521[0]|[1]23842611-23842750[2]|[0]23845009-23845124[1]|[2]23846297-23846508[0]|[1]23847464-23847668[1]|[2]23857844-23857988[2]|[0]23858689-23858829[2]|[0]23861646-23861807[2]|[0]23864785-23864883[2]|[0]23867834-23867917[2]|[0]23871431-23871661[2]|[0]23876294-23876407[2]|[0]23881936-23882045[1]<==>chr19|+|[1]10916407-10916497[1]|[2]10916696-10916777[2]|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atggcggcggccgcgcggcctcggggtcgggcactggggccagtactgccgccgacgccgctgctcctgctggtactgcgggtgctgccagcctgcggggcgaccgctcgggatcccggggccgcggccgggctcagccttcacccgacttacttcaacctggccgaggcggcgaggatttgggccaccgccacctgcggggagaggggacccggcgaggggaggccccagcccgagctctactgcaagttggtcgggggccccaccgccccaggcagcggccacaccatccagggccagttctgtgactattgcaattctgaagaccccaggaaagcacatcctgtcaccaatgccatcgatggatctgaacgttggtggcaaagccctcccctgtcctcaggcacacagtacaacagagtcaacctcaccttggatctggggcagctcttccatgtggcctatattttaatcaaatttgcaaattctcctcgccctgatctttgggtcttggaaagatctgtagactttggaagcacctactcaccatggcaatattttgctcattctaaagtagactgtttaaaagaatttgggcgggaggcaaatatggctgtcacccgggatgatgatgtactttgtgttactgaatattcccgtattgtacctttggaaaatggtgaggttgtggtgtccttgataaacggtcgtccaggtgcaaaaaattttactttctctcacaccctgagggagtttaccaaggcaacaaacatccgcttgcgttttcttagaaccaatacgcttcttggacacctcatctccaaagcccagcgagatccaactgtcactcggcggtattattacagcataaaggacatcagcattggtgggcagtgtgtttgcaatggccatgctgaagtgtgcaatataaacaatcctgaaaaactgtttcggtgtgaatgccagcaccacacctgtggggagacgtgtgatcgctgctgcacagggtacaatcagaggcgctggcggcccgccgcttgggagcagagccacgagtgtgaagcatgcaactgccacggccatgccagcaactgttactatgatccagatgttgagcggcagcaggcaagcttgaatacccagggcatctatgctggtggaggggtctgcattaactgtcagcacaacacagctggagtaaactgtgaacagtgtgctaagggctattaccgcccttatggggttccagtggatgcccctgatggctgcatcccctgcagctgtgaccctgagcatgcggatggctgtgaacagggttcaggccgctgtcactgcaagccaaatttccacggagacaactgtgagaagtgtgcaattggatactacaatttcccattttgcttgagaattcccatttttcctgtttctacaccaagttcagaagatccagtagctggagatataaaagggtgtgactgtaatctggaaggtgttctccctgaaatatgtgatgcccacggacggtgcctgtgccgccctggggttgagggccctcgatgtgatacctgccgctctggtttctactcattccctatttgccaagcctgctggtgttcagcccttggatcctaccagatgccctgcagctcagtgactggacagtgtgaatgtcggccaggagttacaggacagcggtgtgacaggtgtctctcaggagcttatgatttcccccactgccaaggttccagcagtgcttgtgacccagctggtaccatcaactccaatttggggtattgccaatgcaagcttcatgttgaaggtcctacttgtagccgctgcaaactgttatattggaatctggacaaagaaaaccccagtggatgttcagaatgcaagtgccataaggcgggaacagtgagtggaactggagagtgtaggcagggagatggtgactgtcactgcaagtcccatgtgggtggcgattcctgcgacacctgtgaagatggatattttgctttggaaaagagcaattactttgggtgtcaagggtgtcagtgtgacattggtggggcattgtcctccatgtgcagtgggccctcgggagtgtgccagtgccgagagcatgtcgtgggaaaggtgtgccagcggcctgaaaacaactactatttcccagatttgcatcatatgaagtatgagattgaagacggcagcacacctaatgggagagaccttcgatttggatttgatccgctggcatttcctgagtttagctggagaggatatgcccaaatgacctcagtacagaatgatgtaagaataacattgaatgtagggaagtcaagtggctccttgtttcgtgttattctgagatacgttaaccctggaactgaagcagtatctggccatataactatttatccatcctggggtgctgctcaaagcaaagagatcatcttcctgccgagtaaggagccagcctttgtcactgtccctggaaatggttttgcagacccattttcaatcacaccaggaatatgggttgcttgtattaaggcagaaggagtccttctggattacctggtgctgctccccagggactactatgaagcctctgtactgcagctgccagtcacagaaccatgtgcctacgcaggacctccccaagaaaattgcttactctaccagcatttgccagtgaccagattcccctgtaccctggcttgtgaggccagacacttcctgcttgatggggagccaagacccgtggcagtgaggcagcccacacctgcacaccctgtcatggtggacctcagcgggagagaggtggaattgcatctgcggctgcgcatcccacaggttggccactacgtggttgtggtcgagtattccacggaggcagctcagctgtttgtggttgatgtgaatgtgaagagctccgggtctgttctggcaggccaggtgaacatttacagctgcaactacagtgttctctgccggagtgctgtgattgatcacatgagccgcatcgccatgtatgagctattggcagatgcagacattcagctcaagggacacatggcccgattccttctgcatcaagtttgtatcatacctattgaagaattctcagctgagtatgtgagaccacaagtccactgcattgccagttatgggcgatttgtcaatcaaagtgccacctgtgtctccttggcccatgaaactcctccaacagcattaattttggatgttctaagtggcaggcctttccctcacctgccccagcagtcgtcaccttctgttgatgttcttcctggggtcaccttgaaggcaccgcagaatcaagtgaccctgagaggacgtgtaccacacctgggccgatacgtctttgtcatccatttttaccaagcagcgcacccgacgtttcccgcgcaggtgtcggtggatggcgggtggccacgggcaggctccttccatgcctctttttgcccccatgtgcttggctgccgggatcaagtgattgccgaaggccagattgagtttgacatctcagagcctgaagtggccgcaactgtgaaggttccagaaggaaagtccttggttttggtccgtgttctagtggtgcctgcagaaaactatgactaccaaatacttcacaaaaaatccatggacaagtcactcgagtttatcaccaattgtggaaaaaacagcttttaccttgacccccagacagcctccagattctgtaagaattccgccaggtccctggtggccttttaccacaagggcgccctgccttgtgagtgccaccccactggggccaccggccctcactgcagccctgagggtgggcagtgcccatgccagcccaacgtcatcgggcggcagtgcacccgctgtgcaacaggccactacggattcccacgctgcaagccgtgcagctgtggtcggcgcctttgtgaagagatgacggggcagtgccgctgccctccccgcacggtcaggccccagtgtgaggtgtgtgagacacactcattcagcttccaccccatggccggctgcgaaggctgcaactgttccaggaggggcaccatcgaggctgccatgccggagtgtgaccgggacagcgggcagtgcagatgcaagcccagaatcacagggcggcagtgtgaccgatgtgcttccgggttttaccgctttcctgagtgtgttccctgcaattgcaacagagatgggactgagccaggagtgtgtgacccagggaccggggcttgcctctgcaaggaaaatgtagaaggcacagagtgtaatgtgtgtcgagaaggctcattccatttggacccagccaatctcaagggttgtaccagctgtttctgttttggagtaaataatcaatgtcacagctcacataagcgaaggactaagtttgtggatatgctgggctggcacctggagacagcagacagagtggacatccctgtctctttcaacccaggcagcaacagtatggtggcggatctccaggagctgcccgcaaccatccacagcgcgtcctgggtcgcacccacctcctacctgggggacaaggtttcttcatatggtggttacctcacttaccaagccaagtcctttggcttgcctggcgacatggttcttctggaaaagaagccggatgtacagctcactggtcagcacatgtccatcatctatgaggagacaaacaccccacggccagaccggctgcatcatggacgagtgcacgtggtcgagggaaacttcagacatgccagcagccgtgccccagtgtctagggaggagctgatgacagtgctgtctagactggcagatgtgcgcatccaaggcctctacttcacagagactcaaaggctcaccctgagcgaggtggggctagaggaagcctctgacacaggaagtgggcgcatagcacttgctgtggaaatctgtgcctgcccccctgcctacgctggtgactcttgtcagggttgtagccctggatactatcgggatcataaaggcttgtataccggacggtgtgttccctgcaattgcaacggacattcaaatcaatgccaggatggctcaggcatatgtgttaactgtcagcacaacaccgcgggagagcactgtgaacgctgccaggagggctactatggcaacgccgtccacggatcctgcagggcctgcccatgtcctcacactaacagGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MAAAARPRGRALGPVLPPTPLLLLVLRVLPACGATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHTIQGQFCDYCNSEDPRKAHPVTNAIDGSERWWQSPPLSSGTQYNRVNLTLDLGQLFHVAYILIKFANSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREANMAVTRDDDVLCVTEYSRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLRTNTLLGHLISKAQRDPTVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLFRCECQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADGCEQGSGRCHCKPNFHGDNCEKCAIGYYNFPFCLRIPIFPVSTPSSEDPVAGDIKGCDCNLEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCSSVTGQCECRPGVTGQRCDRCLSGAYDFPHCQGSSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKCHKAGTVSGTGECRQGDGDCHCKSHVGGDSCDTCEDGYFALEKSNYFGCQGCQCDIGGALSSMCSGPSGVCQCREHVVGKVCQRPENNYYFPDLHHMKYEIEDGSTPNGRDLRFGFDPLAFPEFSWRGYAQMTSVQNDVRITLNVGKSSGSLFRVILRYVNPGTEAVSGHITIYPSWGAAQSKEIIFLPSKEPAFVTVPGNGFADPFSITPGIWVACIKAEGVLLDYLVLLPRDYYEASVLQLPVTEPCAYAGPPQENCLLYQHLPVTRFPCTLACEARHFLLDGEPRPVAVRQPTPAHPVMVDLSGREVELHLRLRIPQVGHYVVVVEYSTEAAQLFVVDVNVKSSGSVLAGQVNIYSCNYSVLCRSAVIDHMSRIAMYELLADADIQLKGHMARFLLHQVCIIPIEEFSAEYVRPQVHCIASYGRFVNQSATCVSLAHETPPTALILDVLSGRPFPHLPQQSSPSVDVLPGVTLKAPQNQVTLRGRVPHLGRYVFVIHFYQAAHPTFPAQVSVDGGWPRAGSFHASFCPHVLGCRDQVIAEGQIEFDISEPEVAATVKVPEGKSLVLVRVLVVPAENYDYQILHKKSMDKSLEFITNCGKNSFYLDPQTASRFCKNSARSLVAFYHKGALPCECHPTGATGPHCSPEGGQCPCQPNVIGRQCTRCATGHYGFPRCKPCSCGRRLCEEMTGQCRCPPRTVRPQCEVCETHSFSFHPMAGCEGCNCSRRGTIEAAMPECDRDSGQCRCKPRITGRQCDRCASGFYRFPECVPCNCNRDGTEPGVCDPGTGACLCKENVEGTECNVCREGSFHLDPANLKGCTSCFCFGVNNQCHSSHKRRTKFVDMLGWHLETADRVDIPVSFNPGSNSMVADLQELPATIHSASWVAPTSYLGDKVSSYGGYLTYQAKSFGLPGDMVLLEKKPDVQLTGQHMSIIYEETNTPRPDRLHHGRVHVVEGNFRHASSRAPVSREELMTVLSRLADVRIQGLYFTETQRLTLSEVGLEEASDTGSGRIALAVEICACPPAYAGDSCQGCSPGYYRDHKGLYTGRCVPCNCNGHSNQCQDGSGICVNCQHNTAGEHCERCQEGYYGNAVHGSCRACPCPHTNRKHVSYHW*RPPCTLHG*TALHGAVHQGQLLVPAIFPWSGPVGPPRCRGG*VFPAACGGHI*HPDPDGQVCQVHGELLRSQRRRFAQDRNPIQIPHAAFRAGPRPGFLV*RCFHRLHNDRVAVHSPDRAPDPLVPGAVPVPVTTVRQGRGHALRDMSAYCQQKTELRHQYCGPGGPDRLQVQ*PPGSEKPLL*IHGHNALTPTRLPLHISLGKHVEHGQHLQPQQRDGRGRDADRL*LEQCYCQWLQRGPQQPDSFSQHGDCQSHPLPDGLHNEHGDCPRVLRRPGQWWWQHECPLCSQQPVHHGRPRHLHGVAHVHPDQHHALREL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32828 USP43::PRPF8 ENSG00000154914.17::ENSG00000174231.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2110 FALSE NA FALSE NA USP43 ENSG00000154914.17 protein_coding + + chr17:9644698-9729687:+ chr17:9712132:+ chr17:9548015-9633004:+ chr17:9615449:+ PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1662153:- chr17:1553923-1588161:- chr17:1565447:- chr17:9715057,chr17:9715058 chr17:1669639,chr17:1669638 NA NA chr17:9618374,chr17:9618375 chr17:1572933,chr17:1572932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame UCH|102-707|2.5e-62^UCH_1|102-275|1.4e-06^UCH_1|557-689|4.2e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:7.96Mb] 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.222 GT 1.6895 AG 1.585 ENST00000285199.12 1-2335 ENST00000703540.1 3628-6861 chr17|+|[0]9645633-9646136[2]|[0]9656403-9656534[2]|[0]9666648-9666751[1]|[2]9674891-9674983[1]|[2]9676746-9676881[2]|[0]9680231-9680366[0]|[1]9682823-9682958[1]|[2]9686798-9686909[2]|[0]9693127-9693230[1]|[2]9700172-9700249[1]|[2]9701119-9701245[2]|[0]9701352-9701700[0]|[1]9709956-9710114[0]|[1]9711968-9712132[0]<==>chr17|-|[2]1650802-1650956[1]|[0]1651108-1651310[2]|[1]1651414-1651553[0]|[2]1651648-1651788[0]|[2]1653542-1653683[2]|[1]1653777-1654016[2]|[1]1655350-1655543[0]|[2]1656392-1656565[0]|[2]1656648-1656761[0]|[2]1658253-1658381[0]|[2]1658526-1658763[2]|[1]1659357-1659548[2]|[1]1659841-1660001[0]|[2]1660432-1660578[0]|[2]1660698-1660827[2]|[1]1660993-1661162[0]|[2]1661271-1661406[2]|[1]1661611-1661790[2]|[1]1661906-1662153[0] atggacctgggccccggggacgcggcaggagggggaccgctcgcgccccggccccgccgccgccgctccctgcgccgcctgttcagccgcttcctgctggcgctgggcagccgctcacgccccggggactcaccgccccggccccagccgggacactgtgatggcgacggtgaggggggcttcgcctgcgccccgggcccagttccagcggcccccgggagccccggggaggaacgcccgcccggaccccagccccagctccagctccccgccggcgatggggcgcggccgccgggcgctcagggcttgaagaaccacggcaacacctgtttcatgaacgcggtggtgcagtgtctcagcaacaccgacctgctggccgagttcctggcgctggggcgctaccgggcggctccgggccgcgccgaggtcaccgagcagctggcggcgctggtgcgcgcgctctggactcgcgaatacacgccccaactttccgcggagttcaagaatgcagtttccaagtacggctctcagttccaaggcaattcccagcacgacgccctggaattcctgctctggttgctggatcgtgtacatgaggacctggagggttcatcccgagggccggtgtcggagaagcttccgcctgaagccactaaaacctctgagaactgcctgtcaccatcagctcagcttcctctaggtcaaagctttgtgcaaagccactttcaagcacaatatagatcttccttgacttgtccccactgcctgaaacagagcaacacctttgatcctttcctgtgtgtgtccctacctatccccttgcgccagacgaggttcttgagtgtcaccttggtcttcccctctaagagccagcggttcctgcgggttggcctggccgtgccgatcctcagcacagtggcagccctgaggaagatggttgcagaggaaggaggcgtccctgcagatgaggtgatcttggttgaactgtatcccagtggattccagcggtctttctttgatgaagaggacctgaataccatcgcagagggagataatgtgtatgcctttcaagttcctccctcacccagccaggggactctctcagctcatccactgggtctgtcggcctccccacgcctggcagcccgtgagggccagcgattctccctctctctccacagtgagagcaaggtgctaatcctcttctgtaacttggtggggtcagggcagcaggctagcaggtttgggccacccttcctgataagggaagacagagctgtttcctgggcccagctccagcagtctatcctcagcaaggtccgccatcttatgaagagtgaggcccctgtacagaacctggggtctctgttctccatccgtgttgtgggactctctgtggcctgcagctatttgtctccgaaggacagtcggcccctctgtcactgggcagttgacagggttttgcatctcaggaggccaggaggccctccacatgtcaagctggcggtggagtgggatagctctgtcaaggagcgcctgttcgggagcctccaggaggagcgagcgcaggatgccgacagtgtgtggcagcagcagcaggcgcatcagcagcacagctgtaccttggatgaatgttttcagttctacaccaaggaggagcagctggcccaggatgacgcctggaagtgtcctcactgccaagtcctgcagcaggggatggtgaagctgagtttgtggacgctgcctgacatcctcatcatccacctcaaaaggttctgccaggtgggcgagagaagaaacaagctctccacgctggtgaagtttccgctctctggactcaacatggctccccatgtggcccagagaagcaccagccctgaggcaggactgggcccctggccttcctggaagcagccggactgcctgcccaccagttacccgctggacttcctgtacgacctgtatgccgtctgcaaccaccatggcaacctgcaaggtgggcattacacagcctactgccggaactctctggatggccagtggtacagttatgatgacagcacggtggaaccgcttcgagaagatgaggtcaacaccagaggggcttatatcctgttctatcagaagcggaacagcatccctccctggtcagccagcagctccatgagaggctctaccagctcctccctgtctgatcactggctcttacggctcgggagccacgctggcagcacaaggggaagcctgctgtcctggagctctgccccctgcccctccctgccccaggttcctgactctcccatcttcaccaacagcctctgcaatcaggaaaaggATTGTGAATAAGTGGAATACAGCTCTCATTGGCCTTATGACATACTTTCGGGAGGCTGTGGTGAACACCCAAGAGCTCTTGGACTTACTGGTGAAGTGTGAGAACAAAATCCAGACACGTATCAAGATTGGACTCAACTCCAAGATGCCAAGTCGGTTCCCCCCGGTTGTGTTCTACACCCCTAAGGAGTTGGGTGGACTCGGCATGCTCTCAATGGGCCATGTGCTCATCCCCCAATCCGACCTCAGGTGGTCCAAACAGACAGATGTAGGTATCACACACTTTCGTTCAGGAATGAGCCATGAAGAAGACCAGCTCATTCCCAACTTGTACCGCTACATACAGCCATGGGAGAGCGAGTTCATTGATTCTCAGCGGGTCTGGGCTGAGTACGCACTCAAGAGGCAAGAGGCCATTGCTCAGAACAGACGCCTGACTTTAGAAGACCTAGAAGATTCATGGGATCGTGGCATTCCTCGAATCAATACCCTCTTCCAGAAGGACCGGCACACACTGGCTTATGATAAGGGCTGGCGTGTCAGAACTGACTTTAAGCAGTATCAGGTTTTGAAGCAGAATCCGTTCTGGTGGACACACCAGCGGCATGATGGGAAGCTCTGGAACCTGAACAACTACCGTACAGACATGATCCAGGCCCTGGGCGGTGTGGAAGGCATTCTGGAACACACACTCTTTAAGGGCACTTACTTCCCTACCTGGGAGGGGCTTTTCTGGGAGAAGGCCAGTGGCTTTGAGGAATCTATGAAGTGGAAGAAGCTAACTAATGCTCAGCGATCAGGACTGAACCAGATTCCCAATCGTAGATTCACCCTCTGGTGGTCCCCGACCATTAATCGAGCCAATGTATATGTAGGCTTTCAGGTGCAGCTAGACCTGACGGGTATCTTCATGCACGGCAAGATCCCCACGCTGAAGATCTCTCTCATCCAGATCTTCCGAGCTCACTTGTGGCAGAAGATCCATGAGAGCATTGTTATGGACTTATGTCAGGTGTTTGACCAGGAACTTGATGCACTGGAAATTGAGACAGTACAAAAGGAGACAATCCATCCCCGAAAGTCATATAAGATGAACTCTTCCTGTGCAGATATCCTGCTCTTTGCCTCCTATAAGTGGAATGTCTCCCGGCCCTCATTGCTGGCTGACTCCAAGGATGTGATGGACAGCACCACCACCCAGAAATACTGGATTGACATCCAGTTGCGCTGGGGGGACTATGATTCCCACGACATTGAGCGCTACGCCCGGGCCAAGTTCCTGGACTACACCACCGACAACATGAGTATCTACCCTTCGCCCACAGGTGTACTCATCGCCATTGACCTGGCCTATAACTTGCACAGTGCCTATGGAAACTGGTTCCCAGGCAGCAAGCCTCTCATACAACAGGCCATGGCCAAGATCATGAAGGCAAACCCTGCCCTGTATGTGTTACGTGAACGGATCCGCAAGGGGCTACAGCTCTATTCATCTGAACCCACTGAGCCTTATTTGTCTTCTCAGAACTATGGTGAGCTCTTCTCCAACCAGATTATCTGGTTTGTGGATGACACCAACGTCTACAGAGTGACTATTCACAAGACCTTTGAAGGGAACTTGACAACCAAGCCCATCAACGGAGCCATCTTCATCTTCAACCCACGCACAGGGCAGCTGTTCCTCAAGATAATCCACACGTCCGTGTGGGCGGGACAGAAGCGTTTGGGGCAGTTGGCTAAGTGGAAGACAGCTGAGGAGGTGGCCGCCCTGATCCGATCTCTGCCTGTGGAGGAGCAGCCCAAGCAGATCATTGTCACCAGGAAGGGCATGCTGGACCCACTGGAGGTGCACTTACTGGACTTCCCCAATATTGTCATCAAAGGATCGGAGCTCCAACTCCCTTTCCAGGCGTGTCTCAAGGTGGAAAAATTCGGGGATCTCATCCTTAAAGCCACTGAGCCCCAGATGGTTCTCTTCAACCTCTATGACGACTGGCTCAAGACTATTTCATCTTACACGGCCTTCTCCCGTCTCATCCTGATTCTGCGTGCCCTACATGTGAACAACGATCGGGCAAAAGTGATCCTGAAGCCAGACAAGACTACTATTACAGAACCACACCACATCTGGCCCACTCTGACTGACGAAGAATGGATCAAGGTCGAGGTGCAGCTCAAGGATCTGATCTTGGCTGACTACGGCAAGAAAAACAATGTGAACGTGGCATCACTGACACAATCAGAAATTCGAGACATCATCCTGGGTATGGAGATCTCGGCACCGTCACAGCAGCGGCAGCAGATCGCTGAGATCGAGAAGCAGACCAAGGAACAATCGCAGCTGACGGCAACACAGACTCGCACTGTCAACAAGCATGGCGATGAGATCATCACCTCCACCACCAGCAACTATGAGACCCAGACTTTCTCATCCAAGACTGAGTGGAGGGTCAGGGCCATCTCTGCTGCCAACCTGCACCTAAGGACCAATCACATCTATGTTTCATCTGACGACATCAAGGAGACTGGCTACACCTACATCCTTCCCAAGAATGTGCTTAAGAAGTTCATCTGCATATCTGACCTTCGGGCCCAAATTGCAGGATACCTATATGGGGTGAGCCCACCAGATAACCCCCAGGTGAAGGAGATCCGCTGCATTGTGATGGTGCCGCAGTGGGGCACTCACCAGACCGTGCACCTGCCTGGCCAGCTGCCCCAGCATGAGTACCTCAAGGAGATGGAACCCTTAGGTTGGATCCACACTCAGCCCAATGAGTCCCCGCAGTTATCACCCCAGGATGTCACCACCCATGCCAAGATCATGGCTGACAACCCATCTTGGGATGGCGAGAAGACCATTATCATCACATGCAGCTTCACGCCAGGCTCCTGTACACTGACGGCCTACAAGCTGACCCCCAGTGGCTACGAATGGGGCCGCCAGAACACAGACAAGGGCAACAACCCCAAGGGCTACCTGCCTTCACACTATGAGAGGGTGCAGATGCTGCTGTCGGACCGTTTCCTTGGCTTCTTCATGGTCCCTGCCCAGTCCTCGTGGAACTACAACTTCATGGGTGTTCGGCATGACCCCAACATGAAATATGAGCTACAGCTGGCGAACCCCAAAGAGTTCTACCACGAGGTGCACAGGCCCTCTCACTTCCTCAACTTTGCTCTCCTGCAGGAGGGGGAGGTTTACTCTGCGGATCGGGAGGACCTGTATGCCTGA MDLGPGDAAGGGPLAPRPRRRRSLRRLFSRFLLALGSRSRPGDSPPRPQPGHCDGDGEGGFACAPGPVPAAPGSPGEERPPGPQPQLQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGRAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSEKLPPEATKTSENCLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAALRKMVAEEGGVPADEVILVELYPSGFQRSFFDEEDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASPRLAAREGQRFSLSLHSESKVLILFCNLVGSGQQASRFGPPFLIREDRAVSWAQLQQSILSKVRHLMKSEAPVQNLGSLFSIRVVGLSVACSYLSPKDSRPLCHWAVDRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADSVWQQQQAHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYPLDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRNSIPPWSASSSMRGSTSSSLSDHWLLRLGSHAGSTRGSLLSWSSAPCPSLPQVPDSPIFTNSLCNQEKDCE*VEYSSHWPYDILSGGCGEHPRALGLTGEV*EQNPDTYQDWTQLQDAKSVPPGCVLHP*GVGWTRHALNGPCAHPPIRPQVVQTDRCRYHTLSFRNEP*RRPAHSQLVPLHTAMGERVH*FSAGLG*VRTQEARGHCSEQTPDFRRPRRFMGSWHSSNQYPLPEGPAHTGL**GLACQN*L*AVSGFEAESVLVDTPAA*WEALEPEQLPYRHDPGPGRCGRHSGTHTL*GHLLPYLGGAFLGEGQWL*GIYEVEEAN*CSAIRTEPDSQS*IHPLVVPDH*SSQCICRLSGAARPDGYLHARQDPHAEDLSHPDLPSSLVAEDP*EHCYGLMSGV*PGT*CTGN*DSTKGDNPSPKVI*DELFLCRYPALCLL*VECLPALIAG*LQGCDGQHHHPEILD*HPVALGGL*FPRH*ALRPGQVPGLHHRQHEYLPFAHRCTHRH*PGL*LAQCLWKLVPRQQASHTTGHGQDHEGKPCPVCVT*TDPQGATALFI*TH*ALFVFSELW*ALLQPDYLVCG*HQRLQSDYSQDL*RELDNQAHQRSHLHLQPTHRAAVPQDNPHVRVGGTEAFGAVG*VEDS*GGGRPDPISACGGAAQADHCHQEGHAGPTGGALTGLPQYCHQRIGAPTPFPGVSQGGKIRGSHP*SH*APDGSLQPL*RLAQDYFILHGLLPSHPDSACPTCEQRSGKSDPEARQDYYYRTTPHLAHSD*RRMDQGRGAAQGSDLG*LRQEKQCERGITDTIRNSRHHPGYGDLGTVTAAAADR*DREADQGTIAADGNTDSHCQQAWR*DHHLHHQQL*DPDFLIQD*VEGQGHLCCQPAPKDQSHLCFI*RHQGDWLHLHPSQECA*EVHLHI*PSGPNCRIPIWGEPTR*PPGEGDPLHCDGAAVGHSPDRAPAWPAAPA*VPQGDGTLRLDPHSAQ*VPAVITPGCHHPCQDHG*QPILGWREDHYHHMQLHARLLYTDGLQADPQWLRMGPPEHRQGQQPQGLPAFTL*EGADAAVGPFPWLLHGPCPVLVELQLHGCSA*PQHEI*ATAGEPQRVLPRGAQALSLPQLCSPAGGGGLLCGSGGPVCL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32829 EHMT1::EXD3 ENSG00000181090.21::ENSG00000187609.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EHMT1 ENSG00000181090.21 protein_coding + + chr9:137618992-137870016:+ chr9:137762820:+ chr9:140513444-140764468:+ chr9:140657272:+ EXD3 ENSG00000187609.16 protein_coding - - chr9:137306896-137423211:- chr9:137395404:- chr9:140201348-140317663:- chr9:140289856:- chr9:137771207,chr9:137771198,chr9:137771254,chr9:137771252,chr9:137771241,chr9:137771319 chr9:137402045,chr9:137398993,chr9:137398993,chr9:137398995,chr9:137398995,chr9:137402024 NA NA chr9:140665659,chr9:140665650,chr9:140665706,chr9:140665704,chr9:140665693,chr9:140665771 chr9:140296497,chr9:140293445,chr9:140293445,chr9:140293447,chr9:140293447,chr9:140296476 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["EHMT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.20Mb] 12 8 12 8 ONLY_REF_SPLICE YES_LDAS 0.2775 GT 1.9086 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32830 TTC39C::CABLES1 ENSG00000168234.13::ENSG00000134508.13 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TTC39C ENSG00000168234.13 protein_coding + + chr18:23992773-24135610:+ chr18:24083081:+ chr18:21572737-21715574:+ chr18:21663045:+ CABLES1 ENSG00000134508.13 protein_coding + + chr18:23134564-23260470:+ chr18:23252960:+ chr18:20714528-20840434:+ chr18:20832924:+ chr18:24104930,chr18:24104928 chr18:23246170,chr18:23246165 NA NA chr18:21684894,chr18:21684892 chr18:20826134,chr18:20826129 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Iml2-TPR_39|35-498|1.2e-135^VEFS-Box|130-180|5.5e-05^TPR_7|179-185|10^TPR_8|297-306|7.1^TPR_6|298-314|3.9^TPR_14|298-323|1.6^TPR_2|318-345|0.021^TPR_1|322-344|0.098^TPR_12|326-378|0.085^TPR_7|332-348|2.4^Cohesin_load|333-456|4e-10^TPR_2|355-379|0.053^TPR_1|355-378|0.23^TPR_6|356-381|0.082^TPR_12|387-419|0.81^TPR_2|391-418|0.11^TPR_6|392-418|0.0034^TPR_8|399-417|1.5^TPR_14|400-417|3.6^Cohesin_load|468-515|0.0044^TPR_2|488-513|1.6e-05^TPR_1|488-513|6.4e-06^TPR_12|488-512|0.00019^TPR_8|488-513|0.00017^TPR_14|488-513|0.0012^TPR_7|489-513|7.2e-05^TPR_6|496-513|0.01^TPR_2|526-537|1.3^TPR_1|527-537|2^TPR_8|528-538|2 none ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr18:0.73Mb] 12 9 12 9 ONLY_REF_SPLICE YES_LDAS 0.2914 GT 1.8295 AG 1.9219 ENST00000317571.8 1-984 ENST00000256925.12 1447-1902 chr18|+|[0]24014872-24015038[1]|[2]24064140-24064188[2]|[0]24066012-24066140[2]|[0]24069157-24069271[0]|[1]24080585-24080939[1]|[2]24082913-24083081[2]<==>chr18|+|[0]23252960-23253066[1]|[2]23253729-23253936[2]|[0]23257227-23257367[2] atggccggctcggagcagcagcggccgcggcggcgggacgacggagactcggacgcggcagcggcggcggcggcgcccctgcaggacgcggagctggccctggccggcatcaacatgctgctcaacaacggcttcagggagtcggaccagcttttcaaacaatacagaaatcatagcccactaatgagttttggagccagctttgtcagttttttgaatgccatgatgacatttgaggaagaaaaaatgcagttggcatgtgatgacttaaaaaccacagaaaaactgtgtgaaagtgaagaggctggagtaattgaaacaatcaagaataaaattaagaagaacgttgatgtccgaaaatccgccccctctatggttgatcggcttcagaggcagataatcatagctgactgccaggtttacctggctgtgctttcatttgtaaaacaagaattgtcagcttatatcaaaggtgggtggatccttaggaaagcctggaagatttacaataaatgctatctggacatcaatgcccttcaggagctgtatcagaagaagctaactgaagagtccttgacttctgatgctgcaaatgataatcacattgtggctgaaggggtgtctgaggagtctctgaacagactgaaaggtgctgttagctttggatatggcctttttcacctttgcatatccatggtgcccccaaacctgctcaaaatcatcaacctgctgggttttcctggagaccgcctacaggggctttcttcactgatgtatgcaagcgaaagtaaggacatgaaggcccctttagctacattagctctgctctggtatcatactgtagtccgcccgttttttgccttggatggcagtgataacaaggcaggcctggatgaagctaaggaaattctccttaaaaaagaagctgcttatccaaattcttccctctttatgtttttcaagggacggatacaacgactagagACAACAGTGATTGACTACGTGAAGCCCTCGGATCTCAAGAAGGACATGAACGAGACCTTCAAGGAGAAGTTTCCTCACATTAAGCTGACACTCAGCAAAATTAGGAGTCTGAAACGAGAGATGCGGAAGCTTGCGCAGGAGGACTGTGGCCTTGAGGAGCCCACGGTGGCCATGGCCTTCGTCTACTTTGAAAAGCTCGCCCTCAAGGGGAAACTCAACAAACAGAACCGGAAGCTGTGTGCTGGGGCATGTGTGCTGTTAGCAGCCAAAATTGGAAGTGACCTCAAAAAACACGAAGTCAAGCATTTAATTGACAAACTGGAAGAGAAGTTCCGGCTGAACAGGCGAGAACTGATTGCCTTTGAATTCCCGGTGTTAGTGGCCTTGGAATTCGCCCTCCACTTGCCCGAGCACGAAGTCATGCCCCACTACAGACGGCTGGTCCAGAGTTCCTAG MAGSEQQRPRRRDDGDSDAAAAAAAPLQDAELALAGINMLLNNGFRESDQLFKQYRNHSPLMSFGASFVSFLNAMMTFEEEKMQLACDDLKTTEKLCESEEAGVIETIKNKIKKNVDVRKSAPSMVDRLQRQIIIADCQVYLAVLSFVKQELSAYIKGGWILRKAWKIYNKCYLDINALQELYQKKLTEESLTSDAANDNHIVAEGVSEESLNRLKGAVSFGYGLFHLCISMVPPNLLKIINLLGFPGDRLQGLSSLMYASESKDMKAPLATLALLWYHTVVRPFFALDGSDNKAGLDEAKEILLKKEAAYPNSSLFMFFKGRIQRLETTVIDYVKPSDLKKDMNETFKEKFPHIKLTLSKIRSLKREMRKLAQEDCGLEEPTVAMAFVYFEKLALKGKLNKQNRKLCAGACVLLAAKIGSDLKKHEVKHLIDKLEEKFRLNRRELIAFEFPVLVALEFALHLPEHEVMPHYRRLVQSS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match TRUE Ovarian serous cystadenocarcinoma OVARY no_match 21595002 FALSE 20837191 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32831 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25848948:- chr20:25743020-25848861:- chr20:25829584:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 11 11 11 6.73 ONLY_REF_SPLICE YES_LDAS 0.2461 GT 1.6895 AG 1.5058 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32833 LYL1::CACNA1A ENSG00000104903.5::ENSG00000141837.22 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2106 TRUE 3867 TRUE 1463 LYL1 ENSG00000104903.5 protein_coding - - chr19:13099033-13103161:- chr19:13102531:- chr19:13209847-13213975:- chr19:13213345:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13235730:- chr19:13317256-13743839:- chr19:13346544:- chr19:13102299,chr19:13102304 chr19:13242000,chr19:13242002 NA NA chr19:13213113,chr19:13213118 chr19:13352814,chr19:13352816 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["LYL1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr19:0.10Mb] 10 10 10 6.67 ONLY_REF_SPLICE YES_LDAS 0.2314 GT 1.8323 AG 1.5301 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lymphoblastic leukemia derived sequence 1 1 T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32842 PCBP1-AS1::C2orf42 ENSG00000179818.17::ENSG00000115998.8 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2102 TRUE 3862 TRUE 1459 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70083538:- chr2:70187236-70330352:- chr2:70310670:- C2orf42 ENSG00000115998.8 protein_coding - - chr2:70149885-70248615:- chr2:70182935:- chr2:70377017-70475747:- chr2:70410067:- chr2:70067055,chr2:70067058 chr2:70189111,chr2:70189111 NA NA chr2:70294187,chr2:70294190 chr2:70416243,chr2:70416243 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.05Mb];LOCAL_REARRANGEMENT:-:[46660] 6 16 6 3.59 ONLY_REF_SPLICE YES_LDAS 0.1331 GT 1.9656 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32844 CEP70::PIK3CB ENSG00000114107.9::ENSG00000051382.9 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2108 FALSE NA FALSE NA CEP70 ENSG00000114107.9 protein_coding - - chr3:138494344-138594538:- chr3:138570318:- chr3:138213186-138313380:- chr3:138289160:- PIK3CB ENSG00000051382.9 protein_coding - - chr3:138652698-138834928:- chr3:138665203:- chr3:138371540-138553770:- chr3:138384045:- chr3:138544233,chr3:138544373,chr3:138544235,chr3:138544235 chr3:138669289,chr3:138669428,chr3:138669256,chr3:138669288 NA NA chr3:138263075,chr3:138263215,chr3:138263077,chr3:138263077 chr3:138388131,chr3:138388270,chr3:138388098,chr3:138388130 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["PIK3CB:ArcherDX_panel","PIK3CB:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.06Mb];LOCAL_REARRANGEMENT:-:[58161] 6 11 6 8.73 ONLY_REF_SPLICE YES_LDAS 0.2045 GT 1.8295 AG 1.8323 ENST00000264982.8 1-465 ENST00000544716.5 858-1566 chr3|-|[2]138570318-138570498[2]|[1]138571034-138571157[1]|[0]138571266-138571356[0]|[2]138572859-138572927[0]<==>chr3|-|[2]138655389-138655526[0]|[2]138656142-138656274[2]|[1]138657690-138657835[0]|[2]138663906-138664029[2]|[1]138665036-138665203[2] atgtttccggtagcccctaaaccccaggattccagtcaaccatcagacagactcatgactgaaaaacagcaggaagaagcagaatgggaaagcataaatgtgctattgatgatgcatggcttaaaacctttgtctctagtcaaaagaacagatctcaaagatctcatcatttttgacaaacagtcatcacaaaggatgagacagaatttgaaattgttggtggaagaaacatcatgtcaacagaacatgatacaggagcttatagaaactaatcaacagcttagaaatgaacttcagctagagcaaagccgagcagccaatcaagaacaacgagctaatgacttggaacaaattatggaaagtgtgaaatccaaaattggtgaattggaggatgaatcactaagtagggcttgccaccaacagaataaaataaaagatcttcaaaaggagcagaaaactttacagGATGTTGCCTTATGGCTGTTTAGCAACAGGAGATCGCTCTGGCCTCATTGAAGTTGTGAGCACCTCTGAAACAATTGCTGACATTCAGCTGAACAGTAGCAATGTGGCTGCTGCAGCAGCCTTCAACAAAGATGCCCTTCTGAACTGGCTTAAAGAATACAACTCTGGGGATGACCTGGACCGAGCCATTGAGGAATTTACACTGTCCTGTGCTGGCTACTGTGTAGCTTCTTATGTCCTTGGGATTGGTGACAGACATAGTGACAACATCATGGTCAAAAAAACTGGCCAGCTCTTCCACATTGACTTTGGACATATTCTTGGAAATTTCAAATCTAAGTTTGGCATTAAAAGGGAGCGAGTGCCTTTTATTCTTACCTATGATTTCATCCATGTCATTCAACAAGGAAAAACAGGAAATACAGAAAAGTTTGGCCGGTTCCGCCAGTGTTGTGAGGATGCATATCTGATTTTACGACGGCATGGGAATCTCTTCATCACTCTCTTTGCGCTGATGTTGACTGCAGGGCTTCCTGAACTCACATCAGTCAAAGATATACAGTATCTTAAGGACTCTCTTGCATTAGGGAAGAGTGAAGAAGAAGCACTCAAACAGTTTAAGCAAAAATTTGATGAGGCGCTCAGGGAAAGCTGGACTACTAAAGTGAACTGGATGGCCCACACAGTTCGGAAAGACTACAGATCTTAA MFPVAPKPQDSSQPSDRLMTEKQQEEAEWESINVLLMMHGLKPLSLVKRTDLKDLIIFDKQSSQRMRQNLKLLVEETSCQQNMIQELIETNQQLRNELQLEQSRAANQEQRANDLEQIMESVKSKIGELEDESLSRACHQQNKIKDLQKEQKTLQDVALWLFSNRRSLWPH*SCEHL*NNC*HSAEQ*QCGCCSSLQQRCPSELA*RIQLWG*PGPSH*GIYTVLCWLLCSFLCPWDW*QT**QHHGQKNWPALPH*LWTYSWKFQI*VWH*KGASAFYSYL*FHPCHSTRKNRKYRKVWPVPPVL*GCISDFTTAWESLHHSLCADVDCRAS*THISQRYTVS*GLSCIREE*RRSTQTV*AKI**GAQGKLDY*SELDGPHSSERLQIL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Kidney KIDNEY no_match 138500073 FALSE 138795520 FALSE FALSE NA NA NA NA NA NA NA NA NA TRUE phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta 1 Yes SCC, NSCLC epithelial oncogene missense 32846 PRPF8::FAM182B ENSG00000174231.18::ENSG00000175170.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3846 TRUE 1447 PRPF8 ENSG00000174231.18 protein_coding - - chr17:1650629-1684867:- chr17:1673081:- chr17:1553923-1588161:- chr17:1576375:- FAM182B ENSG00000175170.16 lncRNA - - chr20:25762384-25868225:- chr20:25859868:- chr20:25743020-25848861:- chr20:25840504:- chr17:1670332,chr17:1670334 chr20:25865530,chr20:25865529 NA NA chr17:1573626,chr17:1573628 chr20:25846166,chr20:25846165 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 5 11 5 3.06 INCL_NON_REF_SPLICE YES_LDAS 0.1119 GT 1.6895 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32847 CMPK1::MYH11 ENSG00000162368.15::ENSG00000133392.18 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2114 FALSE NA FALSE NA CMPK1 ENSG00000162368.15 protein_coding + + chr1:47333790-47394866:+ chr1:47368615:+ chr1:47799462-47860538:+ chr1:47834287:+ MYH11 ENSG00000133392.18 protein_coding - - chr16:15703135-15857028:- chr16:15798687:- chr16:15796992-15950885:- chr16:15892544:- chr1:47372814,chr1:47372875,chr1:47372874 chr16:15800322,chr16:15800322,chr16:15800322 NA NA chr1:47838486,chr1:47838547,chr1:47838546 chr16:15894179,chr16:15894179,chr16:15894179 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Zeta_toxin|31-205|3.3e-09^AAA_19|36-60|0.00019^AAA_33|37-182|6.8e-07^AAA_18|38-178|5.6e-11^AAA_28|38-120|9.8e-05^ADK|40-202|1.3e-47^AAA_17|41-181|7.1e-38^dNK|42-120|0.16^Thymidylate_kin|43-219|6.5e-10^Cytidylate_kin|43-71|0.001^dNK|136-221|0.00031^Cytidylate_kin|148-224|0.0094^AAA_28|175-188|3.5 Myosin_head-PARTIAL|~503-778|2.5e-307^IQ|797-813|1.9e-06^IQ|822-830|9.9^Myosin_tail_1|855-1935|0^ADIP|855-905|1.4^Crescentin|879-1061|0.0057^AAA_22|899-961|2.8^DUF3970|916-937|0.00086^ADIP|929-994|2.4^ADIP|966-1067|0.15^ERM_helical|980-1098|8.7^Crescentin|985-1162|0.94^ATG16|1000-1154|0.066^CC2-LZ|1002-1076|4.5^AAA_22|1039-1085|2.1^ADIP|1045-1111|0.0076^Crescentin|1065-1245|0.64^CC2-LZ|1082-1163|1.7e-07^ADIP|1103-1209|0.38^ATG16|1165-1320|1.3e-06^Myosin_head|1170-1239|8.1^ADIP|1198-1275|0.27^CC2-LZ|1199-1250|1^ERM_helical|1204-1314|0.00015^Crescentin|1212-1516|2.7e-05^ADIP|1253-1346|0.11^CC2-LZ|1256-1298|0.35^CC2-LZ|1304-1351|1^ERM_helical|1312-1372|0.12^ATG16|1313-1389|0.00023^ADIP|1331-1433|0.96^AAA_22|1355-1423|1.1^ERM_helical|1365-1461|0.0036^Crescentin|1380-1568|0.00045^ADIP|1390-1457|0.11^DUF3970|1405-1423|1.4^ADIP|1425-1485|0.96^ATG16|1468-1577|0.93^ERM_helical|1473-1552|0.0052^AAA_22|1483-1529|0.9^CC2-LZ|1486-1522|4.9^ADIP|1495-1601|1.4e-06^Crescentin|1533-1726|0.035^ERM_helical|1538-1633|6.9^CC2-LZ|1546-1639|0.27^AAA_22|1577-1609|3.4^ADIP|1586-1635|1.4^CC2-LZ|1642-1697|1.7^ERM_helical|1643-1756|2.1e-07^ADIP|1651-1707|0.089^ATG16|1653-1804|0.014^CC2-LZ|1685-1726|0.08^Crescentin|1717-1817|0.00055^ADIP|1726-1812|0.022^ATG16|1734-1843|0.018^CC2-LZ|1737-1811|2.3^ERM_helical|1756-1853|3.8^Myosin_head|1759-1832|9.3^Crescentin|1818-1933|0.038^ADIP|1819-1875|0.58^ERM_helical|1853-1937|0.29^CC2-LZ|1878-1931|0.55^ADIP|1880-1935|0.11 ["MYH11:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr16] 5 6 5 6 ONLY_REF_SPLICE YES_LDAS 0.1527 GT 1.5656 AG 1.8892 ENST00000371873.10 1-318 ENST00000396324.7 503-5940 chr1|+|[0]47333946-47334116[2]|[0]47368469-47368615[2]<==>chr16|-|[2]15703991-15704123[2]|[1]15714909-15715081[0]|[2]15715164-15715272[2]|[1]15717140-15717348[0]|[2]15718315-15718438[2]|[1]15719220-15719308[0]|[2]15719585-15719713[0]|[2]15720151-15720312[0]|[2]15720839-15721051[0]|[2]15721422-15721634[0]|[2]15724161-15724409[0]|[2]15724647-15724799[0]|[2]15724888-15724992[0]|[2]15726848-15727054[0]|[2]15732564-15732708[2]|[1]15735366-15735578[2]|[1]15737449-15737620[1]|[0]15738565-15738688[0]|[2]15740051-15740188[0]|[2]15741463-15741669[0]|[2]15741760-15741891[0]|[2]15745129-15745237[2]|[1]15747570-15747730[0]|[2]15747874-15747943[2]|[1]15748047-15748168[0]|[2]15750138-15750331[1]|[0]15753394-15753508[0]|[2]15756341-15756514[0]|[2]15757827-15758000[0]|[2]15759576-15759728[0]|[2]15760540-15760658[1]|[0]15763796-15763891[1]|[0]15771569-15771712[1]|[0]15776078-15776176[1]|[0]15778780-15778843[0]|[2]15782385-15782477[0]|[2]15784698-15784718[0]|[2]15786630-15786732[2]|[1]15798660-15798687[1] atgctgagccgctgccgcagcgggctgctccacgtcctgggccttagcttcctgctgcagacccgccggccgattctcctctgctctccacgtctcatgaagccgctggtcgtgttcgtcctcggcggccccggcgccggcaaggggacccagtgcgcccgcatcgtcgagaaatatggctacacacacctttctgcaggagagctgcttcgtgatgaaaggaagaacccagattcacagtatggtgaacttattgaaaagtacattaaagaaggaaagattgtaccagttgagataaccatcagtttattaaagaggATCGGGAGGACCAGTCCATTCTATGCACAGGCGAGTCTGGAGCCGGGAAAACCGAAAACACCAAGAAGGTCATTCAGTACCTGGCCGTGGTGGCCTCCTCCCACAAGGGCAAGAAAGACACAAGTATCACGCAAGGCCCATCTTTTGCCTACGGAGAGCTGGAAAAGCAGCTTCTACAAGCAAACCCGATTCTGGAGGCTTTCGGCAACGCCAAAACAGTGAAGAACGACAACTCCTCACGATTCGGCAAATTCATCCGCATCAACTTCGACGTCACGGGTTACATCGTGGGAGCCAACATTGAGACCTATCTGCTAGAAAAATCACGGGCAATTCGCCAAGCCAGAGACGAGAGGACATTCCACATCTTTTACTACATGATTGCTGGAGCCAAGGAGAAGATGAGAAGTGACTTGCTTTTGGAGGGCTTCAACAACTACACCTTCCTCTCCAATGGCTTTGTGCCCATCCCAGCAGCCCAGGATGATGAGATGTTCCAGGAAACCGTGGAGGCCATGGCAATCATGGGTTTCAGCGAGGAGGAGCAGCTATCCATATTGAAGGTGGTATCATCGGTCCTGCAGCTTGGAAATATCGTCTTCAAGAAGGAAAGAAACACAGACCAGGCGTCCATGCCAGATAACACAGCTGCTCAGAAAGTTTGCCACCTCATGGGAATTAATGTGACAGATTTCACCAGATCCATCCTCACTCCTCGTATCAAGGTTGGGCGAGATGTGGTACAGAAAGCTCAGACAAAAGAACAGGCTGACTTTGCTGTAGAGGCTTTGGCCAAGGCAACATATGAGCGCCTTTTCCGCTGGATACTCACCCGCGTGAACAAAGCCCTGGACAAGACCCATCGGCAAGGGGCTTCCTTCCTGGGGATCCTGGATATAGCTGGATTTGAGATCTTTGAGGTGAACTCCTTCGAGCAGCTGTGCATCAACTACACCAACGAGAAGCTGCAGCAGCTCTTCAACCACACCATGTTCATCCTGGAGCAGGAGGAGTACCAGCGCGAGGGCATCGAGTGGAACTTCATCGACTTTGGGCTGGACCTACAGCCCTGCATCGAGCTCATCGAGCGACCGAACAACCCTCCAGGTGTGCTGGCCCTGCTGGACGAGGAATGCTGGTTCCCCAAAGCCACGGACAAGTCTTTCGTGGAGAAGCTGTGCACGGAGCAGGGCAGCCACCCCAAGTTCCAGAAGCCCAAGCAGCTCAAGGACAAGACTGAGTTCTCCATCATCCATTATGCTGGGAAGGTGGACTATAATGCGAGTGCCTGGCTGACCAAGAATATGGACCCGCTGAATGACAACGTGACTTCCCTGCTCAATGCCTCCTCCGACAAGTTTGTGGCCGACCTGTGGAAGGACGTGGACCGCATCGTGGGCCTGGACCAGATGGCCAAGATGACGGAGAGCTCGCTGCCCAGCGCCTCCAAGACCAAGAAGGGCATGTTCCGCACAGTGGGGCAGCTGTACAAGGAGCAGCTGGGCAAGCTGATGACCACGCTACGCAACACCACGCCCAACTTCGTGCGCTGCATCATCCCCAACCACGAGAAGAGGTCCGGCAAGCTGGATGCGTTCCTGGTGCTGGAGCAGCTGCGGTGCAATGGGGTGCTGGAAGGCATTCGCATCTGCCGGCAGGGCTTCCCCAACCGGATCGTCTTCCAGGAGTTCCGCCAACGCTACGAGATCCTGGCGGCGAATGCCATCCCCAAAGGCTTCATGGACGGGAAGCAGGCCTGCATTCTCATGATCAAAGCCCTGGAACTTGACCCCAACTTATACAGGATAGGGCAGAGCAAAATCTTCTTCCGAACTGGCGTCCTGGCCCACCTAGAGGAGGAGCGAGATTTGAAGATCACCGATGTCATCATGGCCTTCCAGGCGATGTGTCGTGGCTACTTGGCCAGAAAGGCTTTTGCCAAGAGGCAGCAGCAGCTGACCGCCATGAAGGTGATTCAGAGGAACTGCGCCGCCTACCTCAAGCTGCGGAACTGGCAGTGGTGGAGGCTTTTCACCAAAGTGAAGCCACTGCTGCAGGTGACACGGCAGGAGGAGGAGATGCAGGCCAAGGAGGATGAACTGCAGAAGACCAAGGAGCGGCAGCAGAAGGCAGAGAATGAGCTTAAGGAGCTGGAACAGAAGCACTCGCAGCTGACCGAGGAGAAGAACCTGCTACAGGAACAGCTGCAGGCAGAGACAGAGCTGTATGCAGAGGCTGAGGAGATGCGGGTGCGGCTGGCGGCCAAGAAGCAGGAGCTGGAGGAGATACTGCATGAGATGGAGGCCCGCCTGGAGGAGGAGGAAGACAGGGGCCAGCAGCTACAGGCTGAAAGGAAGAAGATGGCCCAGCAGATGCTGGACCTTGAAGAACAGCTGGAGGAGGAGGAAGCTGCCAGGCAGAAGCTGCAACTTGAGAAGGTCACGGCTGAGGCCAAGATCAAGAAACTGGAGGATGAGATCCTGGTCATGGATGATCAGAACAATAAACTATCAAAAGAACGAAAACTCCTTGAGGAGAGGATTAGTGACTTAACGACAAATCTTGCAGAAGAGGAAGAAAAGGCCAAGAATCTTACCAAGCTGAAAAACAAGCATGAATCTATGATTTCAGAACTGGAAGTGCGGCTAAAGAAGGAAGAGAAGAGCCGACAGGAGCTGGAGAAGCTGAAACGGAAGCTGGAGGGTGATGCCAGCGACTTCCACGAGCAGATCGCTGACCTCCAGGCGCAGATCGCAGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGCTGCAGGCGGCCCTGGCCAGGCTTGACGATGAAATCGCTCAGAAGAACAATGCCCTGAAGAAGATCCGGGAGCTGGAGGGCCACATCTCAGACCTCCAGGAGGACCTGGACTCAGAGCGGGCCGCCAGGAACAAGGCTGAAAAGCAGAAGCGAGACCTCGGCGAGGAGCTGGAGGCCCTAAAGACAGAGCTGGAAGACACACTGGACAGCACAGCCACTCAGCAGGAGCTCAGGGCCAAGAGGGAGCAGGAGGTGACGGTGCTGAAGAAGGCCCTGGATGAAGAGACGCGGTCCCATGAGGCTCAGGTCCAGGAGATGAGGCAGAAACACGCACAGGCGGTGGAGGAGCTCACAGAGCAGCTTGAGCAGTTCAAGAGGGCCAAGGCGAACCTAGACAAGAATAAGCAGACGCTGGAGAAAGAGAACGCAGACCTGGCCGGGGAGCTGCGGGTCCTGGGCCAGGCCAAGCAGGAGGTGGAACATAAGAAGAAGAAGCTGGAGGCGCAGGTGCAGGAGCTGCAGTCCAAGTGCAGCGATGGGGAGCGGGCCCGGGCGGAGCTCAATGACAAAGTCCACAAGCTGCAGAATGAAGTTGAGAGCGTCACAGGGATGCTTAACGAGGCCGAGGGGAAGGCCATTAAGCTGGCCAAGGACGTGGCGTCCCTCAGTTCCCAGCTCCAGGACACCCAGGAGCTGCTTCAAGAAGAAACCCGGCAGAAGCTCAACGTGTCTACGAAGCTGCGCCAGCTGGAGGAGGAGCGGAACAGCCTGCAAGACCAGCTGGACGAGGAGATGGAGGCCAAGCAGAACCTGGAGCGCCACATCTCCACTCTCAACATCCAGCTCTCCGACTCGAAGAAGAAGCTGCAGGACTTTGCCAGCACCGTGGAAGCTCTGGAAGAGGGGAAGAAGAGGTTCCAGAAGGAGATCGAGAACCTCACCCAGCAGTACGAGGAGAAGGCGGCCGCTTATGATAAACTGGAAAAGACCAAGAACAGGCTTCAGCAGGAGCTGGACGACCTGGTTGTTGATTTGGACAACCAGCGGCAACTCGTGTCCAACCTGGAAAAGAAGCAGAGGAAATTTGATCAGTTGTTAGCCGAGGAGAAAAACATCTCTTCCAAATACGCGGATGAGAGGGACAGAGCTGAGGCAGAAGCCAGGGAGAAGGAAACCAAGGCCCTGTCCCTGGCTCGGGCCCTTGAAGAGGCCTTGGAAGCCAAAGAGGAACTCGAGCGGACCAACAAAATGCTCAAAGCCGAAATGGAAGACCTGGTCAGCTCCAAGGATGACGTGGGCAAGAACGTCCATGAGCTGGAGAAGTCCAAGCGGGCCCTGGAGACCCAGATGGAGGAGATGAAGACGCAGCTGGAAGAGCTGGAGGACGAGCTGCAAGCCACGGAGGACGCCAAACTGCGGCTGGAAGTCAACATGCAGGCGCTCAAGGGCCAGTTCGAAAGGGATCTCCAAGCCCGGGACGAGCAGAATGAGGAGAAGAGGAGGCAACTGCAGAGACAGCTTCACGAGTATGAGACGGAACTGGAAGACGAGCGAAAGCAACGTGCCCTGGCAGCTGCAGCAAAGAAGAAGCTGGAAGGGGACCTGAAAGACCTGGAGCTTCAGGCCGACTCTGCCATCAAGGGGAGGGAGGAAGCCATCAAGCAGCTACGCAAACTGCAGGCTCAGATGAAGGACTTTCAAAGAGAGCTGGAAGATGCCCGTGCCTCCAGAGATGAGATCTTTGCCACAGCCAAAGAGAATGAGAAGAAAGCCAAGAGCTTGGAAGCAGACCTCATGCAGCTACAAGAGGACCTCGCCGCCGCTGAGAGGGCTCGCAAACAAGCGGACCTCGAGAAGGAGGAACTGGCAGAGGAGCTGGCCAGTAGCCTGTCGGGAAGGAACGCACTCCAGGACGAGAAGCGCCGCCTGGAGGCCCGGATCGCCCAGCTGGAGGAGGAGCTGGAGGAGGAGCAGGGCAACATGGAGGCCATGAGCGACCGGGTCCGCAAAGCCACACAGCAGGCCGAGCAGCTCAGCAACGAGCTGGCCACAGAGCGCAGCACGGCCCAGAAGAATGAGAGTGCCCGGCAGCAGCTCGAGCGGCAGAACAAGGAGCTCCGGAGCAAGCTCCACGAGATGGAGGGGGCCGTCAAGTCCAAGTTCAAGTCCACCATCGCGGCGCTGGAGGCCAAGATTGCACAGCTGGAGGAGCAGGTCGAGCAGGAGGCCAGAGAGAAACAGGCGGCCACCAAGTCGCTGAAGCAGAAAGACAAGAAGCTGAAGGAAATCTTGCTGCAGGTGGAGGACGAGCGCAAGATGGCCGAGCAGTACAAGGAGCAGGCAGAGAAAGGCAATGCCAGGGTCAAGCAGCTCAAGAGGCAGCTGGAGGAGGCAGAGGAGGAGTCCCAGCGCATCAACGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCGAGGTGAACGCACTCAAGAGCAAGCTCAGGCGAGGAAACGAGACCTCTTTCGTTCCTTCTAGAAGGTCTGGAGGACGTAGAGTTATTGAAAATGCAGATGGTTCTGAGGAGGAAACGGACACTCGAGACGCAGACTTCAATGGAACCAAGGCCAGTGAATAA MLSRCRSGLLHVLGLSFLLQTRRPILLCSPRLMKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKRIGRTSPFYAQASLEPGKPKTPRRSFSTWPWWPPPTRARKTQVSRKAHLLPTESWKSSFYKQTRFWRLSATPKQ*RTTTPHDSANSSASTSTSRVTSWEPTLRPIC*KNHGQFAKPETRGHSTSFTT*LLEPRRR*EVTCFWRASTTTPSSPMALCPSQQPRMMRCSRKPWRPWQSWVSARRSSYPY*RWYHRSCSLEISSSRRKETQTRRPCQITQLLRKFATSWELM*QISPDPSSLLVSRLGEMWYRKLRQKNRLTLL*RLWPRQHMSAFSAGYSPA*TKPWTRPIGKGLPSWGSWI*LDLRSLR*TPSSSCASTTPTRSCSSSSTTPCSSWSRRSTSARASSGTSSTLGWTYSPASSSSSDRTTLQVCWPCWTRNAGSPKPRTSLSWRSCARSRAATPSSRSPSSSRTRLSSPSSIMLGRWTIMRVPG*PRIWTR*MTT*LPCSMPPPTSLWPTCGRTWTASWAWTRWPR*RRARCPAPPRPRRACSAQWGSCTRSSWAS**PRYATPRPTSCAASSPTTRRGPASWMRSWCWSSCGAMGCWKAFASAGRASPTGSSSRSSANATRSWRRMPSPKASWTGSRPAFS*SKPWNLTPTYTG*GRAKSSSELASWPT*RRSEI*RSPMSSWPSRRCVVATWPERLLPRGSSS*PP*R*FRGTAPPTSSCGTGSGGGFSPK*SHCCR*HGRRRRCRPRRMNCRRPRSGSRRQRMSLRSWNRSTRS*PRRRTCYRNSCRQRQSCMQRLRRCGCGWRPRSRSWRRYCMRWRPAWRRRKTGASSYRLKGRRWPSRCWTLKNSWRRRKLPGRSCNLRRSRLRPRSRNWRMRSWSWMIRTINYQKNENSLRRGLVT*RQILQKRKKRPRILPS*KTSMNL*FQNWKCG*RRKRRADRSWRS*NGSWRVMPATSTSRSLTSRRRSQSSRCSWPRRRRSCRRPWPGLTMKSLRRTMP*RRSGSWRATSQTSRRTWTQSGPPGTRLKSRSETSARSWRP*RQSWKTHWTAQPLSRSSGPRGSRR*RC*RRPWMKRRGPMRLRSRR*GRNTHRRWRSSQSSLSSSRGPRRT*TRISRRWRKRTQTWPGSCGSWARPSRRWNIRRRSWRRRCRSCSPSAAMGSGPGRSSMTKSTSCRMKLRASQGCLTRPRGRPLSWPRTWRPSVPSSRTPRSCFKKKPGRSSTCLRSCASWRRSGTACKTSWTRRWRPSRTWSATSPLSTSSSPTRRRSCRTLPAPWKLWKRGRRGSRRRSRTSPSSTRRRRPLMINWKRPRTGFSRSWTTWLLIWTTSGNSCPTWKRSRGNLISC*PRRKTSLPNTRMRGTELRQKPGRRKPRPCPWLGPLKRPWKPKRNSSGPTKCSKPKWKTWSAPRMTWARTSMSWRSPSGPWRPRWRR*RRSWKSWRTSCKPRRTPNCGWKSTCRRSRASSKGISKPGTSRMRRRGGNCRDSFTSMRRNWKTSESNVPWQLQQRRSWKGT*KTWSFRPTLPSRGGRKPSSSYANCRLR*RTFKESWKMPVPPEMRSLPQPKRMRRKPRAWKQTSCSYKRTSPPLRGLANKRTSRRRNWQRSWPVACREGTHSRTRSAAWRPGSPSWRRSWRRSRATWRP*ATGSAKPHSRPSSSATSWPQSAARPRRMRVPGSSSSGRTRSSGASSTRWRGPSSPSSSPPSRRWRPRLHSWRSRSSRRPERNRRPPSR*SRKTRS*RKSCCRWRTSARWPSSTRSRQRKAMPGSSSSRGSWRRQRRSPSASTPTAGSCSGSWMRPRRATRPWAAR*THSRASSGEETRPLSFLLEGLEDVELLKMQMVLRRKRTLETQTSMEPRPVN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE myosin, heavy polypeptide 11, smooth muscle 1 AML leukaemia_lymphoma fusion translocation 32848 ENSG00000289862::TECPR2 ENSG00000289862.1::ENSG00000196663.16 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2111 FALSE NA FALSE NA ENSG00000289862 ENSG00000289862.1 lncRNA + + chr14:102552286-102591250:+ chr14:102552623:+ chr14:103018623-103057587:+ chr14:103018960:+ TECPR2 ENSG00000196663.16 protein_coding + + chr14:102362941-102502477:+ chr14:102376650:+ chr14:102829278-102968814:+ chr14:102842987:+ chr14:102553539,chr14:102553539 chr14:102363399,chr14:102363396 NA NA chr14:103019876,chr14:103019876 chr14:102829736,chr14:102829733 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 4 4 4 INCL_NON_REF_SPLICE YES_LDAS 0.111 GT 1.9656 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32853 LYL1::CACNA1A ENSG00000104903.5::ENSG00000141837.22 MKN7 SRR8616068 SRR8652120 STOMACH carcinoma (tubular_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2107 TRUE 3867 TRUE 1463 LYL1 ENSG00000104903.5 protein_coding - - chr19:13099033-13103161:- chr19:13102531:- chr19:13209847-13213975:- chr19:13213345:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13236618:- chr19:13317256-13743839:- chr19:13347432:- chr19:13102299,chr19:13102304 chr19:13242000,chr19:13242002 NA NA chr19:13213113,chr19:13213118 chr19:13352814,chr19:13352816 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["LYL1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr19:0.10Mb] 1 14 1 7.33 ONLY_REF_SPLICE YES_LDAS 0.1156 GT 1.8323 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lymphoblastic leukemia derived sequence 1 1 T-ALL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32859 SMCO4::MS4A12 ENSG00000166002.7::ENSG00000071203.9 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2120 FALSE NA FALSE NA SMCO4 ENSG00000166002.7 protein_coding - - chr11:93478472-93543391:- chr11:93543276:- chr11:93211638-93276557:- chr11:93276442:- MS4A12 ENSG00000071203.9 protein_coding + + chr11:60492778-60507430:+ chr11:60506728:+ chr11:60260251-60274903:+ chr11:60274201:+ chr11:93514484,chr11:93515646,chr11:93514492,chr11:93515651 chr11:60505498,chr11:60506137,chr11:60505490,chr11:60506132 NA NA chr11:93247650,chr11:93248812,chr11:93247658,chr11:93248817 chr11:60272971,chr11:60273610,chr11:60272963,chr11:60273605 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:32.97Mb] 109 10 109 10 ONLY_REF_SPLICE YES_LDAS 1.7893 GT 1.2729 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32861 LINC-PINT::ABCA13 ENSG00000231721.8::ENSG00000179869.15 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2121 FALSE NA FALSE NA LINC-PINT ENSG00000231721.8 lncRNA - - chr7:130791264-131110176:- chr7:130945720:- chr7:130476023-130794935:- chr7:130630479:- ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48520041:+ chr7:48211055-48687093:+ chr7:48559637:+ chr7:130944589,chr7:130944589,chr7:130932663,chr7:130932654,chr7:130932618,chr7:130932614,chr7:130932396 chr7:48173398,chr7:48173359,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48172879,chr7:48519139 NA NA chr7:130629348,chr7:130629348,chr7:130617422,chr7:130617413,chr7:130617377,chr7:130617373,chr7:130617155 chr7:48212995,chr7:48212956,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48212476,chr7:48558735 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:82.29Mb] 49 16 49 16 ONLY_REF_SPLICE YES_LDAS 0.9774 GT 1.9656 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32863 RASSF3::COLEC12 ENSG00000153179.14::ENSG00000158270.12 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2123 FALSE NA FALSE NA RASSF3 ENSG00000153179.14 protein_coding + + chr12:64507001-64697564:+ chr12:64610743:+ chr12:64900781-65091344:+ chr12:65004523:+ COLEC12 ENSG00000158270.12 protein_coding - - chr18:316737-500722:- chr18:320064:- chr18:316737-500722:- chr18:320064:- chr12:64636168,chr12:64636165 chr18:321027,chr18:321030 NA NA chr12:65029948,chr12:65029945 chr18:321027,chr18:321030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Nore1-SARAH|51-62|0.98^Mst1_SARAH|52-60|2.4^Vps27_GAT-like|53-63|0.25^DTP-pb9_A-dom_C|70-81|0.00017^RA-PARTIAL|104-111~|3.4e-19 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr18] 14 3 14 3 ONLY_REF_SPLICE YES_LDAS 0.2556 GT 1.7465 AG 1.8892 ENST00000542104.6 1-111 ENST00000400256.5 2210-2229 chr12|+|[0]64610633-64610743[2]<==>chr18|-|[2]320045-320064[1] atgagcagcggctacagcagcctggaggaggacgccgaggacttcttcttcaccgccaggacctccttcttcaggagagcgccccagggcaagccccgctccggccaacaaTACTGTCATCTGCATTATAA MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQYCHLHY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32864 NUP50::A4GALT ENSG00000093000.19::ENSG00000128274.17 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NUP50 ENSG00000093000.19 protein_coding + + chr22:45163925-45188017:+ chr22:45181367:+ chr22:45559806-45583898:+ chr22:45577248:+ A4GALT ENSG00000128274.17 protein_coding - - chr22:42692121-42721298:- chr22:42695631:- chr22:43088127-43117304:- chr22:43091637:- chr22:45183332 chr22:42711290 NA NA chr22:45579213 chr22:43107296 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:2.44Mb] 10 3 9.44 3 ONLY_REF_SPLICE YES_LDAS 0.187 GT 1.5219 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32867 ARHGAP10::LINC02507 ENSG00000071205.12::ENSG00000251688.2 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGAP10 ENSG00000071205.12 protein_coding + + chr4:147732063-148072776:+ chr4:147822957:+ chr4:148653214-148993927:+ chr4:148744108:+ LINC02507 ENSG00000251688.2 lncRNA + + chr4:147567606-147594589:+ chr4:147572681:+ chr4:148488758-148515741:+ chr4:148493833:+ chr4:147824299,chr4:147824296 chr4:147569876,chr4:147569870 NA NA chr4:148745450,chr4:148745447 chr4:148491028,chr4:148491022 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 8 7 8 7 ONLY_REF_SPLICE YES_LDAS 0.2256 GT 1.7465 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-4799 chr4:147782595-147782668:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32872 SIRT3::SIGIRR ENSG00000142082.15::ENSG00000185187.13 KU1919 SRR8616074 SRR8652072 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA SIRT3 ENSG00000142082.15 protein_coding - - chr11:215030-236931:- chr11:230452:- chr11:215030-236931:- chr11:230452:- SIGIRR ENSG00000185187.13 protein_coding - - chr11:405716-417455:- chr11:410027:- chr11:405716-417455:- chr11:410027:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.17Mb] 3 7 3 7 ONLY_REF_SPLICE YES_LDAS 0.1504 GT 1.7232 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32873 RPS19::POU2F2 ENSG00000105372.8::ENSG00000028277.22 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2140 FALSE NA FALSE NA RPS19 ENSG00000105372.8 protein_coding + + chr19:41860255-41872925:+ chr19:41860289:+ chr19:42364325-42376993:+ chr19:42364359:+ POU2F2 ENSG00000028277.22 protein_coding - - chr19:42086110-42196585:- chr19:42122576:- chr19:42590262-42700737:- chr19:42626728:- chr19:41860752,chr19:41860752 chr19:42124609,chr19:42124613 NA NA chr19:42364822,chr19:42364822 chr19:42628761,chr19:42628765 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["POU2F2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.21Mb] 320 0 320 0 ONLY_REF_SPLICE YES_LDAS 2.7065 GT 1.4295 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32876 TTLL7::ERI3 ENSG00000137941.17::ENSG00000117419.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2126 FALSE NA FALSE NA TTLL7 ENSG00000137941.17 protein_coding - - chr1:83865024-83999150:- chr1:83998931:- chr1:84330707-84464833:- chr1:84464614:- ERI3 ENSG00000117419.16 protein_coding - - chr1:44221070-44355260:- chr1:44221640:- chr1:44686742-44820932:- chr1:44687312:- chr1:83970576,chr1:83970583 chr1:44228422,chr1:44228426 NA NA chr1:84436259,chr1:84436266 chr1:44694094,chr1:44694098 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:39.51Mb] 101 35 101 35 ONLY_REF_SPLICE YES_LDAS 1.1502 GT 1.7465 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32877 BCAR3::GLMN ENSG00000137936.18::ENSG00000174842.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2127 FALSE NA FALSE NA BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93775197:- chr1:94027298-94312706:- chr1:94240753:- GLMN ENSG00000174842.17 protein_coding - - chr1:92246402-92298987:- chr1:92291537:- chr1:92711959-92764544:- chr1:92757094:- chr1:93769016,chr1:93769021 chr1:92291896,chr1:92291898 NA NA chr1:94234572,chr1:94234577 chr1:92757453,chr1:92757455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GLMN:Oncogene"];INTRACHROMOSOMAL[chr1:1.26Mb] 81 28 81 28 ONLY_REF_SPLICE YES_LDAS 0.9219 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32879 CCPG1::SHC4 ENSG00000260916.8::ENSG00000185634.12 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2130 FALSE NA FALSE NA CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55408221:- chr15:55632230-55700708:- chr15:55700419:- SHC4 ENSG00000185634.12 protein_coding - - chr15:48823741-48963919:- chr15:48890811:- chr15:49115938-49256116:- chr15:49183008:- chr15:55402593,chr15:55402601 chr15:48895764,chr15:48895769 NA NA chr15:55694791,chr15:55694799 chr15:49187961,chr15:49187966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SHC4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:6.38Mb] 53 3 53 3 ONLY_REF_SPLICE YES_LDAS 0.4737 GT 1.7465 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32883 BRWD3::HMGN5 ENSG00000165288.11::ENSG00000198157.11 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2129 FALSE NA FALSE NA BRWD3 ENSG00000165288.11 protein_coding - - chrX:80669503-80809877:- chrX:80716157:- chrX:79925002-80065376:- chrX:79971656:- HMGN5 ENSG00000198157.11 protein_coding - - chrX:81113699-81201913:- chrX:81119817:- chrX:80369198-80457412:- chrX:80375316:- chrX:80715139 chrX:81120719 NA NA chrX:79970638 chrX:80376218 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NBCH_WD40|147-208|0.0017^WD40|176-207|9.8e-11^ANAPC4_WD40|181-229|0.015^NBCH_WD40|206-251|1e-05^WD40|212-249|4.7e-10^ANAPC4_WD40|218-273|0.14^WD40|256-295|2.6e-08^ANAPC4_WD40|314-372|0.32^WD40|321-345|2.7e-05^NBCH_WD40|321-348|0.036^WD40|354-391|5.8e-09^NBCH_WD40|357-396|0.011^ANAPC4_WD40|418-471|0.0018^WD40|426-451|0.2^NBCH_WD40|448-503|0.00089^WD40|455-494|5.6e-09^ANAPC4_WD40|477-503|1.6^ANAPC4_WD40|509-542|0.14^WD40|511-532|1.8e-05^Zn_ribbon_recom|781-819|0.00018^WD40|950-961|3.4^Auxin_resp|1016-1081|0.00012^Bromodomain|1147-1232|8.7e-24^Zn_ribbon_recom|1289-1301|6^Bromodomain|1309-1335|0.027^Bromodomain|1357-1415|5.6e-15 HMG14_17-PARTIAL|~16-97|3.1e-30^HMG14_17|108-152|1^HMG14_17|121-172|0.77^HMG14_17|171-219|1^HMG14_17|219-268|1 ["BRWD3:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:0.30Mb] 42 14 42 14 ONLY_REF_SPLICE YES_LDAS 0.4736 GT 1.8892 AG 1.9219 ENST00000373275.5 1-2325 ENST00000358130.7 16-849 chrX|-|[2]80716157-80716250[2]|[1]80717573-80717759[1]|[0]80719489-80719656[1]|[0]80722562-80722787[0]|[2]80723748-80723876[0]|[2]80724933-80725067[0]|[2]80728752-80728905[2]|[1]80729916-80730020[2]|[1]80733456-80733496[0]|[2]80734118-80734218[1]|[0]80735127-80735197[2]|[1]80735988-80736088[0]|[2]80744032-80744253[0]|[2]80745569-80745729[1]|[0]80791854-80791952[1]|[0]80793622-80793772[0]|[2]80808539-80808598[0]|[2]80809013-80809042[0]|[2]80809246-80809304[1]|[0]80809441-80809471[0]<==>chrX|-|[2]81114649-81115230[0]|[2]81116204-81116341[0]|[2]81118432-81118485[0]|[2]81118730-81118759[0]|[2]81119788-81119817[0] atggcggcagcacctacccagatcgaagccgagctgtattacctgatcgctaggttcttgcagtctggaccctgcaacaaatccgctcaggtgctagtgcaggagctcgaggagcatcagctgattccgcgccgcttagattgggaggggaaagagcaccgaagaagcttcgaggatctggtggcagcaaatgcacacattcctccagactacctccttaaaatttgtgagagaattggtcctttactagataaagagatccctcagagtgttcctggggtacagacattattaggtgttggtcggcagtctctgctacgggatgccaaagactgtaagagtacactatggaatgggtctgcttttgcggctctgcatagaggcagacctccagaactacctgtaaattatgtgaaacctccaaatgtggtgaatatcacctctgccaggcaattaaccggctgtagtcgctttggtcatattttcccttcatctgcttaccagcacattaagatgcataagagaattctggggcacttgtcatctgtctactgtgtagcatttgaccgaagcgggagaagaatttttacaggttcagatgactgtttagtaaaaatttgggctacagatgatggacgccttcttgctacacttcgtggacactctgctgaaatttctgacatggctgttaactatgaaaacactcttattgctgcaggcagctgtgataaggtagtaagagtatggtgtcttcgaacttgtgcacccgttgcagtccttcagggccattcagcttctattacttccatacagttttgtccatcaactaaaggcacaaacagatacctcacttctactggtgctgatggaacaatctgtttctggcaatggcatgtaaaaacaatgaagtttagagatcgcccggtgaaatttactgagagatccagacctggagtccagatatcttgttcatctttcagttctggtggtatgttcattacaactggtagtactgaccatgtgattagaatatattatttgggttctgaggttcctgagaaaattgctgaattagagtcacatacggataaagttgttgctgttcagttctgtaacaatggagacagtttaagatttgttagtggaagtcgagatggaacggcaagaatttggcagtatcagcaacaagaatggaagagtatagtgctagacatggctactaaaatgactggcaataatttgccatctggagaagacaagatcactaaacttaaggtgactatggtggcctgggatcgctatgataccacagttattactgcagtgaacaattttcttttgaaagtgtggaattctatcacaggacagcttcttcatacattatctggacatgatgatgaagtattcgttctagaagcccatccatttgatcaaaggatcatactttcagcaggtcatgatgggaacatttttatttgggaccttgaccgggggaccaaaattcggaattactttaacatgattgaaggccaaggccatggtgcggtgtttgattgtaaattttcaccagatggaaaccattttgcctgcacagattctcatggacatttgctgctttttggttttggatgcagtaaatactacgaaaagattccagatcagatgttcttccacacggattatcgtcctcttattcgtgatgccaataactatgtattggatgaacaaacccaacaagctcctcacctcatgcctcctccatttttggtggatgttgatggaaatcctcatcccacaaaattccaacggttggtaccaggacgggaaaattgtaaagatgaacagcttataccacagctgggatatgtggctaatggtgatggtgaggtagtagaacaggtaattgggcagcaaaccaatgaccaagatgagagcattcttgatggaataatcagggagctgcagagagaacaagacctgagactaattaatgaaggagatgttccacatttaccagttaatagagcatactctgttaatggtgctctgagaagtccaaacatggacatatcttcttccccaaacatcaggcttcgaagacatagtagtcaaattgaaggtgttagacaaatgcataacaatgctcctcggagccagatggccactgaaagagatctcatggcgtggagcagaagagtggtggtcaatgaactaaataatggggttagtagggtacaggaagaatgtcgaactgcaaaaggtgacatagaaatcagtctttatacagttgaaaagaagaaaaagccatcttacactactcaaaggGCTGCAGGTCAAGGTGATATGAGGCAGGAGCCAAAGAGAAGATCTGCCAGGTTGTCTGCTATGCTTGTGCCAGTTACACCAGAGGTGAAGCCTAAAAGAACATCAAGTTCAAGGAAAATGAAGACAAAAAGTGATATGATGGAAGAAAACATAGATACAAGTGCCCAAGCAGTTGCTGAAACCAAGCAAGAAGCAGTTGTTGAAGAAGACTACAATGAAAATGCTAAAAATGGAGAAGCCAAAATTACAGAGGCACCAGCTTCTGAAAAAGAAATTGTGGAAGTAAAAGAAGAAAATATTGAAGATGCCACAGAAAAGGGAGGAGAAAAGAAAGAAGCAGTGGCAGCAGAAGTAAAAAATGAAGAAGAAGATCAGAAAGAAGATGAAGAAGATCAAAACGAAGAGAAAGGGGAAGCTGGAAAAGAAGACAAAGATGAAAAAGGGGAAGAAGATGGAAAAGAGGATAAAAATGGAAATGAGAAAGGAGAAGATGCAAAAGAGAAAGAAGATGGAAAAAAAGGTGAAGACGGAAAAGGAAATGGAGAAGATGGAAAAGAGAAAGGAGAAGATGAAAAAGAGGAAGAAGACAGAAAAGAAACAGGAGATGGAAAAGAGAATGAAGATGGAAAAGAGAAGGGAGATAAAAAAGAGGGGAAAGATGTAAAAGTCAAAGAAGATGAAAAAGAGAGAGAAGATGGAAAAGAAGATGAAGGTGGAAATGAGGAAGAAGCTGGAAAAGAGAAAGAAGATTTAAAAGAAGAGGAAGAAGGAAAAGAGGAAGATGAGATCAAAGAAGATGATGGAAAAAAAGAGGAGCCACAGAGTATTGTTTAA MAAAPTQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANAHIPPDYLLKICERIGPLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSARQLTGCSRFGHIFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTNRYLTSTGADGTICFWQWHVKTMKFRDRPVKFTERSRPGVQISCSSFSSGGMFITTGSTDHVIRIYYLGSEVPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKSIVLDMATKMTGNNLPSGEDKITKLKVTMVAWDRYDTTVITAVNNFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPFDQRIILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTDYRPLIRDANNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTNDQDESILDGIIRELQREQDLRLINEGDVPHLPVNRAYSVNGALRSPNMDISSSPNIRLRRHSSQIEGVRQMHNNAPRSQMATERDLMAWSRRVVVNELNNGVSRVQEECRTAKGDIEISLYTVEKKKKPSYTTQRAAGQGDMRQEPKRRSARLSAMLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKEDDGKKEEPQSIV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32884 PRKACB::HIVEP3 ENSG00000142875.21::ENSG00000127124.16 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PRKACB ENSG00000142875.21 protein_coding + + chr1:84078062-84238498:+ chr1:84078371:+ chr1:84543745-84704181:+ chr1:84544054:+ HIVEP3 ENSG00000127124.16 protein_coding - - chr1:41506365-42035925:- chr1:41849089:- chr1:41972036-42501596:- chr1:42314760:- chr1:84157819,chr1:84157820 chr1:41888062,chr1:41888227 NA NA chr1:84623502,chr1:84623503 chr1:42353733,chr1:42353898 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HIVEP3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:42.04Mb] 23 1 23 1 ONLY_REF_SPLICE YES_LDAS 0.203 GT 1.5546 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN cAMP-dependent protein kinase catalytic subunit beta AGC PKA P22694 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32887 PDSS1::MINDY3 ENSG00000148459.16::ENSG00000148481.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2136 FALSE NA FALSE NA PDSS1 ENSG00000148459.16 protein_coding + + chr10:26697701-26746798:+ chr10:26742577:+ chr10:26986630-27035727:+ chr10:27031506:+ MINDY3 ENSG00000148481.14 protein_coding - - chr10:15778170-15860507:- chr10:15847943:- chr10:15820169-15902506:- chr10:15889942:- chr10:26745301,chr10:26745301,chr10:26745301 chr10:15852932,chr10:15852975,chr10:15852981 NA NA chr10:27034230,chr10:27034230,chr10:27034230 chr10:15894931,chr10:15894974,chr10:15894980 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame polyprenyl_synt|120-363|2.4e-72 MINDY-3_4_CD-PARTIAL|~95-301|2.1e-55^EF-hand_7|306-357|3e-07^EF-hand_6|308-335|9.6e-05^MINDY-3_4_CD|378-437|0.0001 ["CCLE_StarF2019"] 17 0 17 0 ONLY_REF_SPLICE YES_LDAS 0.1438 GT 1.9656 AG 1.2729 ENST00000376215.10 1-1107 ENST00000277632.8 95-1338 chr10|+|[0]26697712-26697840[2]|[0]26702162-26702194[2]|[0]26704677-26704741[1]|[2]26705286-26705394[2]|[0]26709638-26709768[1]|[2]26720218-26720359[2]|[0]26723806-26723917[0]|[1]26724014-26724123[2]|[0]26735240-26735320[2]|[0]26735466-26735579[2]|[0]26742497-26742577[2]<==>chr10|-|[2]15778992-15779141[0]|[2]15782155-15782226[0]|[2]15786561-15786648[2]|[1]15789247-15789319[1]|[0]15796100-15796172[0]|[2]15816835-15816915[0]|[2]15821656-15821726[1]|[0]15833630-15833709[2]|[1]15834543-15834616[0]|[2]15837204-15837318[2]|[1]15838228-15838279[1]|[0]15841426-15841599[1]|[0]15843212-15843272[0]|[2]15847864-15847943[1] atggcctcgcgctggtggcggtggcggcgcggctgctcctggaagccggcggcgcggagccccgggcccggctcccccggccgtgcgggaccgttggggccgagcgccgctgccgaagtccgcgcgcaggttcataggcggaagggacttgacttgtctcagataccctatattaatcttgtgaagcatttaacatctgcctgtccaaatgtatgtcgtatatcacggtttcatcacacaaccccagacagtaaaacacacagtggtgaaaaatacaccgatcctttcaaactcggttggagagacttgaaaggtctgtatgaggacattagaaaggaactgcttatatcaacatcagaacttaaggaaatgtctgagtactactttgatgggaaagggaaagcctttcgaccaattattgtggcgctaatggcccgagcatgcaatattcatcataacaactcccgacatgtgcaagccagccagcgcgccatagccttaattgcagaaatgatccacactgctagtctggttcacgatgacgttattgacgatgcaagttctcgaagaggaaaacacacagttaataagatctggggtgaaaagaaggctgttcttgctggagatttaattctttctgcagcatctatagctctggcacgaattggaaatacaactgttatatctattttaacccaagttattgaagatttggtgcgtggtgaatttcttcagctcgggtcaaaagaaaatgagaatgaaagatttgcacactaccttgagaagacattcaagaagaccgccagcctgatagccaacagttgtaaagcagtctctgttctaggatgtcccgacccagtggtgcatgagatcgcctatcagtacggaaaaaatgtaggaatagcttttcagctaatagatgatgtattggacttcacctcgtgttctgaccagatgggcaaaccaacatcagctgatctgaagctcgggttagccactggtcctgtcctgtttgcctgtcagcagttcccagaaatgaatgctatgatcatgcgacggttcagtttgcctggagatgtagacagagctcgacagtatgtactacagGGTTTGTGTTTAGTGAATCAGAGGGATCTGCATTAGAACAGTTTGAAGGTGGCCCCTGTGCTGTTATTGCACCTGTTCAGGCATTTCTTTTGAAGAAGCTCCTGTTTTCTTCGGAGAAGTCTTCTTGGCGGGATTGTTCAGAGGAAGAGCAGAAGGAACTCCTTTGTCATACCTTGTGTGATATTTTAGAAAGTGCTTGTTGTGACCACTCTGGATCATACTGCTTGGTTTCATGGTTAAGAGGAAAGACAACTGAGGAAACTGCTAGTATTTCTGGGAGTCCTGCAGAGTCTAGTTGCCAAGTGGAACATTCTTCTGCCTTGGCTGTCGAAGAGCTTGGCTTTGAGCGATTTCATGCATTAATTCAAAAAAGATCGTTCAGAAGTTTACCAGAATTAAAAGATGCTGTCTTGGACCAGTATTCAATGTGGGGAAATAAATTTGGAGTATTGCTTTTTCTGTATTCTGTATTACTGACAAAGGGCATTGAAAACATAAAAAACGAAATTGAAGATGCAAGTGAACCCTTGATAGATCCTGTATATGGACATGGCAGCCAAAGTTTAATTAATCTCCTGCTGACGGGACATGCTGTTTCTAATGTATGGGATGGTGATAGAGAGTGCTCAGGAATGAAACTTCTTGGTATACATGAACAAGCAGCAGTAGGATTTTTAACACTAATGGAAGCTTTAAGATACTGTAAGGTTGGTTCTTACTTGAAATCTCCAAAATTCCCTATTTGGATTGTTGGCAGTGAGACTCACCTCACCGTATTTTTTGCCAAGGATATGGCTTTAGTTGCCCCTGAAGCTCCTTCAGAACAAGCCAGAAGAGTTTTTCAAACCTACGACCCAGAAGATAATGGATTCATACCCGATTCACTTCTGGAAGATGTGATGAAAGCATTGGACCTTGTTTCAGATCCTGAATATATAAATCTCATGAAGAATAAATTAGATCCAGAAGGATTAGGAATCATATTATTGGGCCCATTTCTTCAAGAATTTTTTCCTGATCAGGGCTCCAGTGGTCCAGAATCTTTTACTGTCTACCACTACAATGGATTGAAGCAGTCAAATTATAATGAAAAGGTCATGTACGTAGAAGGGACTGCAGTTGTGATGGGTTTTGAAGATCCCATGCTACAGACAGATGACACTCCTATTAAACGCTGTCTGCAAACCAAATGGCCATACATTGAGTTACTCTGGACCACAGATCGCTCTCCTTCACTAAATTAA MASRWWRWRRGCSWKPAARSPGPGSPGRAGPLGPSAAAEVRAQVHRRKGLDLSQIPYINLVKHLTSACPNVCRISRFHHTTPDSKTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAMIMRRFSLPGDVDRARQYVLQGLCLVNQRDLH*NSLKVAPVLLLHLFRHFF*RSSCFLRRSLLGGIVQRKSRRNSFVIPCVIF*KVLVVTTLDHTAWFHG*EERQLRKLLVFLGVLQSLVAKWNILLPWLSKSLALSDFMH*FKKDRSEVYQN*KMLSWTSIQCGEINLEYCFFCILYY*QRALKT*KTKLKMQVNP**ILYMDMAAKV*LISC*RDMLFLMYGMVIESAQE*NFLVYMNKQQ*DF*H*WKL*DTVRLVLT*NLQNSLFGLLAVRLTSPYFLPRIWL*LPLKLLQNKPEEFFKPTTQKIMDSYPIHFWKM**KHWTLFQILNI*IS*RIN*IQKD*ESYYWAHFFKNFFLIRAPVVQNLLLSTTTMD*SSQIIMKRSCT*KGLQL*WVLKIPCYRQMTLLLNAVCKPNGHTLSYSGPQIALLH*I FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32888 PIGB::DNAJC13 ENSG00000069943.10::ENSG00000138246.17 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PIGB ENSG00000069943.10 protein_coding + + chr15:55318960-55355648:+ chr15:55319413:+ chr15:55611158-55647846:+ chr15:55611611:+ DNAJC13 ENSG00000138246.17 protein_coding + + chr3:132417502-132539032:+ chr3:132434538:+ chr3:132136346-132257876:+ chr3:132153382:+ chr15:55320151,chr15:55320152 chr3:132422999,chr3:132422997 NA NA chr15:55612349,chr15:55612350 chr3:132141843,chr3:132141841 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr15--chr3] 16 5 16 5 ONLY_REF_SPLICE YES_LDAS 0.1776 GT 1.2729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32892 PYGO1::MAPK6 ENSG00000171016.13::ENSG00000069956.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2138 FALSE NA FALSE NA PYGO1 ENSG00000171016.13 protein_coding - - chr15:55538884-55588947:- chr15:55587835:- chr15:55831082-55881145:- chr15:55880033:- MAPK6 ENSG00000069956.14 protein_coding + + chr15:51952106-52067375:+ chr15:52058633:+ chr15:52244303-52359572:+ chr15:52350830:+ chr15:55577723,chr15:55577726,chr15:55577736 chr15:52050137,chr15:52050134,chr15:52050136 NA NA chr15:55869921,chr15:55869924,chr15:55869934 chr15:52342334,chr15:52342331,chr15:52342333 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["MAPK6:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr15:3.47Mb] 13 4 13 4 ONLY_REF_SPLICE YES_LDAS 0.1438 GT 1.7819 AG 1.9899 ENST00000645724.1 1-49 ENST00000691380.1 701-2166 chr15|-|[0]55587835-55587883[0]<==>chr15|+|[1]52058633-52058797[0]|[1]52061299-52061500[1]|[2]52063902-52065000[2] atgtcagcagaacaggagaaggatcccatttcgctgaagagagttcgagGTGCACATGAACTTGAACAGATGCAGCTGATTTTAGAATCTATTCCTGTTGTACATGAGGAAGATCGTCAGGAGCTTCTCAGCGTAATTCCAGTTTACATTAGAAATGACATGACTGAGCCACACAAACCTTTAACTCAGCTGCTTCCAGGAATTAGTCGAGAAGCACTGGATTTCCTGGAACAAATTTTGACATTTAGCCCCATGGATCGGTTAACAGCAGAAGAAGCACTCTCCCATCCTTACATGAGCATATATTCTTTTCCAATGGATGAGCCAATTTCAAGCCATCCTTTTCATATTGAAGATGAAGTTGATGATATTTTGCTTATGGATGAAACTCACAGTCACATTTATAACTGGGAAAGGTATCATGATTGTCAGTTTTCAGAGCATGATTGGCCTGTACATAACAACTTTGATATTGATGAAGTTCAGCTTGATCCAAGAGCTCTGTCCGATGTCACTGATGAAGAAGAAGTACAAGTTGATCCCCGAAAATATTTGGATGGAGATCGGGAAAAGTATCTGGAGGATCCTGCTTTTGATACCAATTACTCTACTGAGCCTTGTTGGCAATACTCAGATCATCATGAAAACAAATATTGTGATCTGGAGTGTAGCCATACTTGTAACTACAAAACGAGGTCATCATCATATTTAGATAACTTAGTTTGGAGAGAGAGTGAAGTTAACCATTACTATGAACCCAAGCTTATTATAGATCTTTCCAATTGGAAAGAACAAAGCAAAGAAAAATCTGATAAGAAAGGCAAATCAAAATGTGAAAGGAATGGATTGGTTAAAGCCCAGATAGCGCTAGAGGAAGCATCACAGCAACTGGCTGGAAAAGAAAGGGAAAAGAATCAGGGATTTGATTTTGATTCCTTTATTGCAGGAACTATTCAGCTTAGTTCCCAGCATGAGCCTACTGATGTTGTTGATAAATTAAATGACTTGAATAGCTCAGTGTCCCAACTAGAATTGAAAAGTTTGATATCAAAGTCAGTAAGCCAAGAAAAACAGGAAAAAGGAATGGCAAATCTGGCTCAATTAGAAGCCTTGTACCAGTCTTCTTGGGACAGCCAGTTTGTGAGTGGTGGGGAGGACTGTTTTTTCATAAATCAGTTTTGTGAGGTAAGGAAGGATGAACAAGTTGAGAAGGAAAACACTTACACTAGTTACTTGGACAAGTTCTTTAGCAGGAAAGAAGATACTGAAATGCTAGAAACTGAGCCAGTAGAGGATGGGAAGCTTGGGGAGAGAGGACATGAGGAAGGATTTCTGAACAACAGTGGGGAGTTCCTCTTTAACAAGCAGCTCGAGTCCATAGGCATCCCACAGTTTCACAGTCCAGTTGGGTCACCACTTAAGTCAATACAGGCCACATTAACACCTTCTGCTATGAAATCTTCCCCTCAAATTCCTCATCAAACATACAGCAGCATTCTGAAACATCTGAACTAA MSAEQEKDPISLKRVRGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREALDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDEPISSHPFHIEDEVDDILLMDETHSHIYNWERYHDCQFSEHDWPVHNNFDIDEVQLDPRALSDVTDEEEVQVDPRKYLDGDREKYLEDPAFDTNYSTEPCWQYSDHHENKYCDLECSHTCNYKTRSSSYLDNLVWRESEVNHYYEPKLIIDLSNWKEQSKEKSDKKGKSKCERNGLVKAQIALEEASQQLAGKEREKNQGFDFDSFIAGTIQLSSQHEPTDVVDKLNDLNSSVSQLELKSLISKSVSQEKQEKGMANLAQLEALYQSSWDSQFVSGGEDCFFINQFCEVRKDEQVEKENTYTSYLDKFFSRKEDTEMLETEPVEDGKLGERGHEEGFLNNSGEFLFNKQLESIGIPQFHSPVGSPLKSIQATLTPSAMKSSPQIPHQTYSSILKHLN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Mitogen-activated protein kinase 6 CMGC MAPK ERK3 Q16659 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32894 PRKCI::MECOM ENSG00000163558.13::ENSG00000085276.19 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2135 FALSE NA FALSE NA PRKCI ENSG00000163558.13 protein_coding + + chr3:170222424-170305977:+ chr3:170263429:+ chr3:169940212-170023765:+ chr3:169981217:+ MECOM ENSG00000085276.19 protein_coding - - chr3:169083499-169663775:- chr3:169381524:- chr3:168801287-169381563:- chr3:169099312:- chr3:170267272,chr3:170267270 chr3:169486483,chr3:169486484 NA NA chr3:169985060,chr3:169985058 chr3:169204271,chr3:169204272 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Kdo|25-56|0.34^PB1|26-107|9.3e-19^C1_1|141-192|7e-19^C1_2|149-182|1.8e-05^FTA2|252-303|0.0015^Pkinase-PARTIAL|256-364~|5.5e-72^PK_Tyr_Ser-Thr-PARTIAL|256-364~|5.4e-37^ABC1-PARTIAL|329-364~|2.4e-05^Kdo-PARTIAL|330-364~|7.3e-05^Kinase-like-PARTIAL|340-364~|3.5e-08^APH-PARTIAL|346-364~|0.00018 PRDM2_PR|81-199|1.1e-31^SET|91-186|6.6e-09^zf-H2C2_2|204-219|0.0029^zf-C2H2_8|206-229|1^zf-C2H2_jaz|208-229|0.06^Zn-ribbon_8|208-232|0.0015^zf-C2H2|209-229|8.3e-05^zf-C2H2_4|209-229|0.00049^zf-C2H2_6|209-221|1.1^zf-H2C2_5|209-215|1^zf-met|209-228|0.028^zf-C2H2_11|209-224|1.7^CEP104_ZnF|210-234|0.66^Zap1_zf1|213-227|0.82^CEP104_ZnF|255-310|0.0009^zf-C2H2|264-285|4.5e-07^zf-H2C2_2|264-272|0.75^zf-C2H2_4|264-285|2.9e-06^zf-C2H2_6|264-286|1.4e-07^zf-C2H2_jaz|264-284|0.1^zf-met|264-285|0.004^zf-C2H2_11|264-282|2^Zn-ribbon_8|264-278|0.098^zf-H2C2_5|265-285|0.032^zf-C2H2_8|265-310|0.00051^Zap1_zf1|266-283|9.8e-05^zf-H2C2_2|277-301|5.6e-10^zf-BED|287-309|0.22^SET|288-312|5.2^Zn-ribbon_8|290-301|0.027^zf-C2H2|291-313|2.2e-07^zf-C2H2_4|291-313|0.00011^zf-C2H2_6|291-313|0.01^zf-C2H2_jaz|291-310|0.51^zf-H2C2_5|291-309|0.002^zf-C2H2_11|291-309|2.6^CEP104_ZnF|293-361|0.06^Zap1_zf1|294-309|0.31^zf-C2H2_8|296-340|0.026^zf-H2C2_2|305-329|1.3e-05^zf-C2H2_8|316-370|0.033^zf-C2H2_6|318-328|0.22^zf-C2H2_jaz|318-340|1.4e-06^zf-C2H2|319-342|3.7e-09^zf-C2H2_4|319-342|1.2e-06^zf-met|319-340|0.00021^zf-BED|319-342|0.00096^Zn-ribbon_8|319-355|1.9e-05^zf-C2H2_11|320-339|0.03^GAGA|320-343|0.21^zf-H2C2_5|321-342|0.00015^Zap1_zf1|323-343|6.5e-05^zf-H2C2_2|333-359|7.3e-09^zf-C2H2_6|347-370|0.0001^zf-C2H2_11|347-369|0.027^zf-C2H2|348-370|2e-07^zf-C2H2_4|348-370|4e-06^zf-C2H2_jaz|348-367|6.7e-05^zf-H2C2_5|350-353|3.7^zf-met|350-366|0.0058^zf-BED|350-366|0.28^zf-C2H2_8|350-429|0.002^Zap1_zf1|352-366|0.33^zf-H2C2_2|363-387|6.3e-06^GAGA|372-395|0.065^zf-BED|374-394|1.9^zf-C2H2|376-398|2.1e-06^zf-C2H2_4|376-398|0.00028^zf-C2H2_6|376-398|0.0019^zf-C2H2_jaz|376-385|0.24^zf-met|376-386|0.029^Zn-ribbon_8|376-412|3.5^CEP104_ZnF|378-433|0.027^zf-H2C2_5|389-398|1^zf-H2C2_2|393-416|0.029^zf-BED|393-423|5^zf-C2H2_jaz|404-424|0.28^zf-C2H2_11|405-425|0.0008^zf-C2H2|406-425|5.9e-07^zf-C2H2_4|406-425|0.00028^zf-C2H2_6|406-425|0.013^zf-H2C2_5|406-412|3.7^Zap1_zf1|406-423|0.0028^Zn-ribbon_8|406-419|0.09^zf-met|407-423|1.1^SET|630-654|3.9^zf-H2C2_2|917-930|0.041^zf-C2H2_6|920-943|5.9e-05^zf-BED|920-942|1.7e-06^zf-C2H2|921-943|8.3e-10^zf-C2H2_4|921-943|7.5e-07^zf-C2H2_jaz|921-942|0.0072^zf-H2C2_5|921-944|0.00027^zf-met|921-943|0.012^GAGA|921-941|0.063^Zn-ribbon_8|921-930|0.19^CEP104_ZnF|922-1002|0.0003^zf-C2H2_11|922-941|0.033^Zap1_zf1|926-940|0.77^zf-C2H2_8|926-998|0.012^zf-H2C2_2|935-959|1.5e-11^GAGA|945-969|0.024^zf-C2H2|949-972|1.1e-08^zf-C2H2_4|949-972|1.4e-06^zf-C2H2_6|949-959|0.0022^zf-C2H2_jaz|949-969|7.3e-05^zf-H2C2_5|949-974|3.4e-07^zf-met|949-968|0.14^zf-BED|949-973|0.0001^zf-C2H2_11|949-972|0.00083^Zn-ribbon_8|949-983|0.34^Zap1_zf1|954-968|0.013^zf-BED|962-999|0.44^zf-H2C2_2|963-988|1.6e-09^GAGA|973-998|0.0065^zf-C2H2|978-1000|2.3e-06^zf-C2H2_4|978-1000|3.7e-05^zf-C2H2_6|978-1001|0.0015^zf-C2H2_jaz|978-998|0.0037^zf-H2C2_5|978-1002|0.0048^zf-met|978-998|0.091^zf-C2H2_11|978-997|3e-05^Zap1_zf1|984-999|5.5^zf-H2C2_2|992-1001|0.19^zf-C2H2_jaz|1060-1068|5.6 ["PRKCI:ArcherDX_panel","PRKCI:FoundationOne_panel"];["MECOM:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.56Mb] 11 4 11 4 ONLY_REF_SPLICE YES_LDAS 0.1268 GT 1.8323 AG 1.5656 ENST00000295797.5 1-364 ENST00000651503.2 38-3720 chr3|+|[0]170222670-170222770[1]|[2]170235230-170235351[0]|[1]170259969-170260058[0]|[1]170263379-170263429[0]<==>chr3|-|[2]169084909-169085043[0]|[2]169089000-169089183[2]|[1]169090000-169090236[2]|[1]169092958-169093102[1]|[0]169095076-169095245[2]|[1]169100885-169100962[2]|[1]169102060-169102226[0]|[2]169107926-169107952[0]|[2]169112787-169112874[2]|[1]169115383-169116739[1]|[0]169121056-169121209[0]|[2]169122580-169122727[2]|[1]169127844-169128060[1]|[0]169131429-169131531[0]|[2]169143698-169143832[0]|[2]169381187-169381524[1] atgccgacccagagggacagcagcaccatgtcccacacggtcgcaggcggcggcagcggggaccattcccaccaggtccgggtgaaagcctactaccgcggggatatcatgataacacattttgaaccttccatctcctttgagggcctttgcaatgaggttcgagacatgtgttcttttgacaacgaacagctcttcaccatgaaatggatagatgaggaaggagacccgtgtacagtatcatctcagttggagttagaagaagcctttagactttatgagctaaacaaggattctgaactcttgattcatgtgttcccttgtgtaccagaacgtcctgggatgccttgtccaggagaagataATAATGAGTGTGTATATGGCAACTACCCTGAAATACCTTTGGAAGAAATGCCAGATGCAGATGGAGTAGCCAGCACTCCCTCCCTCAATATTCAAGAGCCATGCTCTCCTGCCACATCCAGTGAAGCATTCACTCCAAAGGAGGGTTCTCCTTACAAAGCCCCCATCTACATCCCTGATGATATCCCCATTCCTGCTGAGTTTGAACTTCGAGAGTCAAATATGCCTGGGGCAGGACTAGGAATATGGACCAAAAGGAAGATCGAAGTAGGTGAAAAGTTTGGGCCTTATGTGGGAGAGCAGAGGTCAAACCTGAAAGACCCCAGTTATGGATGGGAGATCTTAGACGAATTTTACAATGTGAAGTTCTGCATAGATGCCAGTCAACCAGATGTTGGAAGCTGGCTCAAGTACATTAGATTCGCTGGCTGTTATGATCAGCACAACCTTGTTGCATGCCAGATAAATGATCAGATATTCTATAGAGTAGTTGCAGACATTGCGCCGGGAGAGGAGCTTCTGCTGTTCATGAAGAGCGAAGACTATCCCCATGAAACTATGGCGCCGGATATCCACGAAGAACGGCAATATCGCTGCGAAGACTGTGACCAGCTCTTTGAATCTAAGGCTGAACTAGCAGATCACCAAAAGTTTCCATGCAGTACTCCTCACTCAGCATTTTCAATGGTTGAAGAGGACTTTCAGCAAAAACTCGAAAGCGAGAATGATCTCCAAGAGATACACACGATCCAGGAGTGTAAGGAATGTGACCAAGTTTTTCCTGATTTGCAAAGCCTGGAGAAACACATGCTGTCACATACTGAAGAGAGGGAATACAAGTGTGATCAGTGTCCCAAGGCATTTAACTGGAAGTCCAATTTAATTCGCCACCAGATGTCACATGACAGTGGAAAGCACTATGAATGTGAAAACTGTGCCAAGGTTTTCACGGACCCTAGCAACCTTCAGCGGCACATTCGCTCTCAGCATGTCGGTGCCCGGGCCCATGCATGCCCGGAGTGTGGCAAAACGTTTGCCACTTCGTCGGGCCTCAAACAACACAAGCACATCCACAGCAGTGTGAAGCCCTTTATCTGTGAGGTCTGCCATAAATCCTATACTCAGTTTTCAAACCTTTGCCGTCATAAGCGCATGCATGCTGATTGCAGAACCCAAATCAAGTGCAAAGACTGTGGACAAATGTTCAGCACTACGTCTTCCTTAAATAAACACAGGAGGTTTTGTGAGGGCAAGAACCATTTTGCGGCAGGTGGATTTTTTGGCCAAGGCATTTCACTTCCTGGAACCCCAGCTATGGATAAAACGTCCATGGTTAATATGAGTCATGCCAACCCGGGCCTTGCTGACTATTTTGGCGCCAATAGGCATCCTGCTGGTCTTACCTTTCCAACAGCTCCTGGATTTTCTTTTAGCTTCCCTGGTCTGTTTCCTTCCGGCTTGTACCACAGGCCTCCTTTGATACCTGCTAGTTCTCCTGTTAAAGGACTATCAAGTACTGAACAGACAAACAAAAGTCAAAGTCCCCTCATGACACATCCTCAGATACTGCCAGCTACACAGGATATTTTGAAGGCACTATCTAAACACCCATCTGTAGGGGACAATAAGCCAGTGGAGCTCCAGCCCGAGAGGTCCTCTGAAGAGAGGCCCTTTGAGAAAATCAGTGACCAGTCAGAGAGTAGTGACCTTGATGATGTCAGTACACCAAGTGGCAGTGACCTGGAAACAACCTCGGGCTCTGATCTGGAAAGTGACATTGAAAGTGATAAAGAGAAATTTAAAGAAAATGGTAAAATGTTCAAAGACAAAGTAAGCCCTCTTCAGAATCTGGCTTCAATAAATAATAAGAAAGAATACAGCAATCATTCCATTTTCTCACCATCTTTAGAGGAGCAGACTGCGGTGTCAGGAGCTGTGAATGATTCTATAAAGGCTATTGCTTCTATTGCTGAAAAATACTTTGGTTCAACAGGACTGGTGGGGCTGCAAGACAAAAAAGTTGGAGCTTTACCTTACCCTTCCATGTTTCCCCTCCCATTTTTTCCAGCATTCTCTCAATCAATGTACCCATTTCCTGATAGAGACTTGAGATCGTTACCTTTGAAAATGGAACCCCAATCACCAGGTGAAGTAAAGAAACTGCAGAAGGGCAGCTCTGAGTCCCCCTTTGATCTCACCACTAAGCGAAAGGATGAGAAGCCCTTGACTCCAGTCCCCTCCAAGCCTCCAGTGACACCTGCCACAAGCCAAGACCAGCCCCTGGATCTAAGTATGGGCAGTAGGAGTAGAGCCAGTGGGACAAAGCTGACTGAGCCTCGAAAAAACCACGTGTTTGGGGGAAAAAAAGGAAGCAACGTCGAATCAAGACCTGCTTCAGATGGTTCCTTGCAGCATGCAAGACCCACTCCTTTCTTTATGGACCCTATTTACAGAGTAGAGAAAAGAAAACTAACTGACCCACTTGAAGCTTTAAAAGAGAAATACTTGAGGCCTTCTCCAGGATTCTTGTTTCACCCACAATTCCAACTGCCTGATCAGAGAACTTGGATGTCAGCTATTGAAAACATGGCAGAAAAGCTAGAGAGCTTCAGTGCCCTGAAACCTGAGGCCAGTGAGCTCTTACAGTCAGTGCCCTCTATGTTCAACTTCAGGGCGCCTCCCAATGCCCTGCCAGAGAACCTTCTGCGGAAGGGAAAGGAGCGCTATACCTGCAGATACTGTGGCAAGATTTTTCCAAGGTCTGCAAACCTAACACGGCACTTGAGAACCCACACAGGAGAGCAGCCTTACAGATGCAAATACTGTGACAGATCATTTAGCATATCTTCTAACTTGCAAAGGCATGTTCGCAACATCCACAATAAAGAGAAGCCATTTAAGTGTCACTTATGTGATAGGTGTTTTGGTCAACAAACCAATTTAGACAGACACCTAAAGAAACATGAGAATGGGAACATGTCCGGTACAGCAACATCGTCGCCTCATTCTGAACTGGAAAGTACAGGTGCGATTCTGGATGACAAAGAAGATGCTTACTTCACAGAAATTCGAAATTTCATTGGGAACAGCAACCATGGCAGCCAATCTCCCAGGAATGTGGAGGAGAGAATGAATGGCAGTCATTTTAAAGATGAAAAGGCTTTGGTGACCAGTCAAAATTCAGACTTGCTGGATGATGAAGAAGTTGAAGATGAGGTGTTGTTAGATGAGGAGGATGAAGACAATGATATTACTGGAAAAACAGGAAAGGAACCAGTGACAAGTAATTTACATGAAGGAAACCCTGAGGATGACTATGAAGAAACCAGTGCCCTGGAGATGAGTTGCAAGACATCCCCAGTGAGGTATAAAGAGGAAGAATATAAAAGTGGACTTTCTGCTCTAGATCATATAAGGCACTTCACAGATAGCCTCAAAATGAGGAAAATGGAAGATAATCAATATTCTGAAGCTGAGCTGTCTTCTTTTAGTACTTCCCATGTGCCAGAGGAACTTAAGCAGCCGTTACACAGAAAGTCCAAATCGCAGGCATATGCTATGATGCTGTCACTGTCTGACAAGGAGTCCCTCCATTCTACATCCCACAGTTCTTCCAACGTGTGGCACAGTATGGCCAGGGCTGCGGCGGAATCCAGTGCTATCCAGTCCATAAGCCACGTATGA MPTQRDSSTMSHTVAGGGSGDHSHQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPCPGEDNNECVYGNYPEIPLEEMPDADGVASTPSLNIQEPCSPATSSEAFTPKEGSPYKAPIYIPDDIPIPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGEQRSNLKDPSYGWEILDEFYNVKFCIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQIFYRVVADIAPGEELLLFMKSEDYPHETMAPDIHEERQYRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDFQQKLESENDLQEIHTIQECKECDQVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGANRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASSPVKGLSSTEQTNKSQSPLMTHPQILPATQDILKALSKHPSVGDNKPVELQPERSSEERPFEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDIESDKEKFKENGKMFKDKVSPLQNLASINNKKEYSNHSIFSPSLEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPGEVKKLQKGSSESPFDLTTKRKDEKPLTPVPSKPPVTPATSQDQPLDLSMGSRSRASGTKLTEPRKNHVFGGKKGSNVESRPASDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQFQLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFNFRAPPNALPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNVEERMNGSHFKDEKALVTSQNSDLLDDEEVEDEVLLDEEDEDNDITGKTGKEPVTSNLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQYSEAELSSFSTSHVPEELKQPLHRKSKSQAYAMMLSLSDKESLHSTSHSSSNVWHSMARAAAESSAIQSISHV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C iota type AGC PKC PKCi P41743 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE MDS1 and EVI1 complex locus 1 AML, CML, MDS leukaemia_lymphoma oncogene, fusion translocation 32895 NMT2::PDE3A ENSG00000152465.18::ENSG00000172572.7 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2139 FALSE NA FALSE NA NMT2 ENSG00000152465.18 protein_coding - - chr10:15102584-15168693:- chr10:15168503:- chr10:15144583-15210692:- chr10:15210502:- PDE3A ENSG00000172572.7 protein_coding + + chr12:20368537-20688583:+ chr12:20556660:+ chr12:20521471-20841517:+ chr12:20709594:+ chr10:15145498,chr10:15145640,chr10:15145642 chr12:20456282,chr12:20456276,chr12:20456274 NA NA chr10:15187497,chr10:15187639,chr10:15187641 chr12:20609216,chr12:20609210,chr12:20609208 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none PDEase_I-PARTIAL|~961-1015|2.9e-65 INTERCHROMOSOMAL[chr10--chr12] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1015 GT 1.5656 AG 1.9899 ENST00000378165.9 1-110 ENST00000359062.4 961-3426 chr10|-|[1]15168503-15168612[0]<==>chr12|+|[0]20556660-20556710[2]|[0]20613443-20613700[2]|[0]20616230-20616384[1]|[2]20621296-20621411[0]|[1]20629908-20630127[1]|[2]20633693-20633778[0]|[1]20634902-20635056[2]|[0]20637100-20637237[2]|[0]20639846-20639957[0]|[1]20646490-20646603[0]|[1]20646751-20646950[2]|[0]20648688-20648891[2]|[0]20650445-20650600[2]|[0]20653947-20654205[0]|[1]20680030-20680271[2] atggcggaggacagcgagtctgcggccagccagcagagcctggaactggacgaccaggacacgtgcgggatagacggggacaatgaggaggagacggagcacgccaaaggCTCATGGGGCATTCAGAATGGGACCACAAACGAGGGCCAAGAGGATCACAGTCTTCAGGAACCAGTATTACTGTGGACATCGCCGTCATGGGCGAGGCCCACGGCCTCATTACCGACCTCCTGGCAGACCCTTCTCTTCCACCAAACGTGTGCACATCCTTGAGAGCCGTGAGCAACTTGCTCAGCACACAGCTCACCTTCCAGGCCATTCACAAGCCCAGAGTGAATCCCGTCACTTCGCTCAGTGAAAACTATACCTGTTCTGACTCTGAAGAGAGCTCTGAAAAAGACAAGCTTGCTATTCCAAAGCGCCTGAGAAGGAGTTTGCCTCCTGGCTTGTTGAGACGAGTTTCTTCCACTTGGACCACCACCACCTCGGCCACAGGTCTACCCACCTTGGAGCCTGCACCAGTACGGAGAGACCGCAGCACCAGCATCAAACTGCAGGAAGCACCTTCATCCAGTCCTGATTCTTGGAATAATCCAGTGATGATGACCCTCACCAAAAGCAGATCCTTTACTTCATCCTATGCTATTTCTGCAGCTAACCATGTAAAGGCTAAAAAGCAAAGTCGACCAGGTGCCCTCGCTAAAATTTCACCTCTTTCATCGCCCTGCTCCTCACCTCTCCAAGGGACTCCTGCCAGCAGCCTGGTCAGCAAAATTTCTGCAGTGCAGTTTCCAGAATCTGCTGACACAACTGCCAAACAAAGCCTAGGTTCTCACAGGGCCTTAACTTACACTCAGAGTGCCCCAGACCTATCCCCTCAAATCCTGACTCCACCTGTTATATGTAGCAGCTGTGGCAGACCATATTCCCAAGGGAATCCTGCTGATGAGCCCCTGGAGAGAAGTGGGGTAGCCACTCGGACACCAAGTAGAACAGATGACACTGCTCAAGTTACCTCTGATTATGAAACCAATAACAACAGTGACAGCAGTGACATTGTACAGAATGAAGATGAAACAGAGTGCCTGAGAGAGCCTCTGAGGAAAGCATCGGCTTGCAGCACCTATGCTCCTGAGACCATGATGTTTCTGGACAAACCAATTCTTGCTCCCGAACCTCTTGTCATGGATAACCTGGACTCAATTATGGAGCAGCTAAATACTTGGAATTTTCCAATTTTTGATTTAGTGGAAAATATAGGAAGAAAATGTGGCCGTATTCTTAGTCAGGTATCTTACAGACTTTTTGAAGACATGGGCCTCTTTGAAGCTTTTAAAATTCCAATTAGGGAATTTATGAATTATTTTCATGCTTTGGAGATTGGATATAGGGATATTCCTTATCATAACAGAATCCATGCCACTGATGTTTTACATGCTGTTTGGTATCTTACTACACAGCCTATTCCAGGCCTCTCAACTGTGATTAATGATCATGGTTCAACCAGTGATTCAGATTCTGACAGTGGATTTACACATGGACATATGGGATATGTATTCTCAAAAACGTATAATGTGACAGATGATAAATACGGATGTCTGTCTGGGAATATCCCTGCCTTGGAGTTGATGGCGCTGTATGTGGCTGCAGCCATGCACGATTATGATCATCCAGGAAGGACTAATGCTTTCCTGGTTGCAACTAGTGCTCCTCAGGCGGTGCTATATAACGATCGTTCAGTTTTGGAGAATCATCACGCAGCTGCTGCATGGAATCTTTTCATGTCCCGGCCAGAGTATAACTTCTTAATTAACCTTGACCATGTGGAATTTAAGCATTTCCGTTTCCTTGTCATTGAAGCAATTTTGGCCACTGACCTGAAGAAACACTTTGACTTCGTAGCCAAATTTAATGGCAAGGTAAATGATGATGTTGGAATAGATTGGACCAATGAAAATGATCGTCTACTGGTTTGTCAAATGTGTATAAAGTTGGCTGATATCAATGGTCCAGCTAAATGTAAAGAACTCCATCTTCAGTGGACAGATGGTATTGTCAATGAATTTTATGAACAGGGTGATGAAGAGGCCAGCCTTGGATTACCCATAAGCCCCTTCATGGATCGTTCTGCTCCTCAGCTGGCCAACCTTCAGGAATCCTTCATCTCTCACATTGTGGGGCCTCTGTGCAACTCCTATGATTCAGCAGGACTAATGCCTGGAAAATGGGTGGAAGACAGCGATGAGTCAGGAGATACTGATGACCCAGAAGAAGAGGAGGAAGAAGCACCAGCACCAAATGAAGAGGAAACCTGTGAAAATAATGAATCTCCAAAAAAGAAGACTTTCAAAAGGAGAAAAATCTACTGCCAAATAACTCAGCACCTCTTACAGAACCACAAGATGTGGAAGAAAGTCATTGAAGAGGAGCAACGGTTGGCAGGCATAGAAAATCAATCCCTGGACCAGACCCCTCAGTCGCACTCTTCAGAACAGATCCAGGCTATCAAGGAAGAAGAAGAAGAGAAAGGGAAACCAAGAGGCGAGGAGATACCAACCCAAAAGCCAGACCAGTGA MAEDSESAASQQSLELDDQDTCGIDGDNEEETEHAKGSWGIQNGTTNEGQEDHSLQEPVLLWTSPSWARPTASLPTSWQTLLFHQTCAHP*EP*ATCSAHSSPSRPFTSPE*IPSLRSVKTIPVLTLKRALKKTSLLFQSA*EGVCLLAC*DEFLPLGPPPPRPQVYPPWSLHQYGETAAPASNCRKHLHPVLILGIIQ***PSPKADPLLHPMLFLQLTM*RLKSKVDQVPSLKFHLFHRPAPHLSKGLLPAAWSAKFLQCSFQNLLTQLPNKA*VLTGP*LTLRVPQTYPLKS*LHLLYVAAVADHIPKGILLMSPWREVG*PLGHQVEQMTLLKLPLIMKPITTVTAVTLYRMKMKQSA*ESL*GKHRLAAPMLLRP*CFWTNQFLLPNLLSWITWTQLWSS*ILGIFQFLI*WKI*EENVAVFLVRYLTDFLKTWASLKLLKFQLGNL*IIFMLWRLDIGIFLIITESMPLMFYMLFGILLHSLFQASQL*LMIMVQPVIQILTVDLHMDIWDMYSQKRIM*QMINTDVCLGISLPWS*WRCMWLQPCTIMIIQEGLMLSWLQLVLLRRCYITIVQFWRIITQLLHGIFSCPGQSITS*LTLTMWNLSISVSLSLKQFWPLT*RNTLTS*PNLMAR*MMMLE*IGPMKMIVYWFVKCV*SWLISMVQLNVKNSIFSGQMVLSMNFMNRVMKRPALDYP*APSWIVLLLSWPTFRNPSSLTLWGLCATPMIQQD*CLENGWKTAMSQEILMTQKKRRKKHQHQMKRKPVKIMNLQKRRLSKGEKSTAK*LSTSYRTTRCGRKSLKRSNGWQA*KINPWTRPLSRTLQNRSRLSRKKKKRKGNQEARRYQPKSQTS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32897 SVIL::PIP4K2A ENSG00000197321.16::ENSG00000150867.14 CHAGOK1 SRR8616079 SRR8639198 LUNG carcinoma primary star-fusion TRUE TRUE TRUE 2134 FALSE NA FALSE NA SVIL ENSG00000197321.16 protein_coding - - chr10:29457338-29736959:- chr10:29529705:- chr10:29746267-30025888:- chr10:29818634:- PIP4K2A ENSG00000150867.14 protein_coding - - chr10:22534854-22714578:- chr10:22609717:- chr10:22823783-23003507:- chr10:22898646:- chr10:29525253,chr10:29525258 chr10:22622258,chr10:22622260 NA NA chr10:29814182,chr10:29814187 chr10:22911187,chr10:22911189 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4695|429-454|3^DUF4695|649-669|0.0093^DUF4695|718-745|0.018^DUF4695|819-866|1.9e-05^Gelsolin|1459-1506|1.5e-09^Gelsolin|1587-1626|1e-05^Gelsolin|1771-1856|2.4e-07^Gelsolin|1901-1976|0.0036^Gelsolin|2046-2060|0.0067^VHP|2179-2214|1.3e-19 PIP5K-PARTIAL|~145-403|1.6e-85 ["DepMap2023"];INTRACHROMOSOMAL[chr10:6.74Mb] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1015 GT 1.8892 AG 1.9219 ENST00000355867.9 1-2246 ENST00000376573.9 145-1221 chr10|-|[1]29529705-29529844[0]|[2]29530607-29530668[1]|[0]29531254-29531288[2]|[1]29532002-29532172[2]|[1]29532529-29533458[2]|[1]29535989-29536069[2]|[1]29550597-29551263[1]|[0]29554783-29554934[2]|[1]29555051-29555058[0]<==>chr10|-|[2]22537201-22537281[0]|[2]22539971-22540074[1]|[0]22541804-22542047[0]|[2]22550659-22550772[0]|[2]22567851-22567889[0]|[2]22573311-22573457[0]|[2]22591629-22591781[0]|[2]22607927-22608023[2]|[1]22609620-22609717[0] atgaaaagaaaagaaagaattgccaggcgcctggaagggattgaaaatgacactcagcccatcctcttgcagagctgcacaggattggtgactcaccgcctgctggaggaagacacccctcgatacatgagagccagcgaccctgccagcccccacatcggccgatcaaatgaagaggaggaaacttctgattcttctctagaaaagcaaactcgatccaaatactgcacagaaacctccggtgtccacggtgactcaccctatggttcgggtaccatggacacccacagtctggagtccaaagccgaaagaattgcaaggtacaaagcagaaagaaggcgacagctggcagagaagtatgggctgactctggatcccgaggccgactccgagtatttatcccgctataccaagtccaggaaggagcctgatgctgtcgagaagcggggaggaaaaagtgacaaacaggaagagtcaagcagagatgctagttctctgtaccccgggaccgagacgatggggctcaggacctgtgccggtgaatccaaggactatgccctccatgtgggtgacggctcttccgacccggaggtgctgctgaacatagaaaaccaaagacgaggtcaagagctgagtgccacccggcaggcccatgacctgtccccagcagccgagagttcctcgaccttctctttctctgggcgagactcctccttcactgaagtgccacggtcccccaagcacgcccacagctcctccctgcagcaggcagcctcccggagcccctcctttggtgacccacagctatcccctgaggcccgacccagtacagggaaacccaaacatgagtggtttctccagaaagattccgaaggggacacaccttcacttatcaactggccttccagagttaaagttagagaaaaattggtgaaagaggaaagtgctcgaaacagccctgaactcgcctcagagtccgtaactcagaggagacaccagccagcgccagtccattacgtgtcatttcagtctgagcactcagcctttgatagggtccccagcaaggcagcaggctctacacgacagccaatccgtggctatgtccaacccgcagataccggtcacaccgccaagctagtgacgccagaaaccccagaaaatgcatctgagtgtagctgggtagcatcagccacccagaatgtccccaaacctcccagcttgacggttctagaaggtgacggaagggatagcccagttctccatgtctgcgagtcaaaagcagaagaagaagaaggggaaggagaaggagaagaaaaagaagaagatgtgtgcttcactgaagctctcgagcaaagcaagaaaaccctactggctttggagggtgatgggctagtgagaagcccagaagatccctctagaaatgaggactttggtaagcctgctgtgagcacagtcaccttagagcatcagaaggaactggaaaacgtggcacaaccccctcaagctccgcaccagcccactgagaggacaggcaggagcgagatggttctctacattcaaagtgagcctgtgtcccaagacgccaaaccaactggtcacaacagggaagcctcgaaaaagcgcaaggtccgtacccgctctctgtcagatttcacaggcccccctcagctccaggccttgaagtataaggacccagcttccaggagagagctggagctgcccagctccaagaccgaagggccttatggggagatcagcatgctggacacaaaagtctctgtcgcccagctccgaagtgcgttcctggcatctgccaacgcctgcaggagacctgaactcaaatcacgggtggagaggtcggctgaaggacctggcttgcccaccggtgtggaacgggagagagggtcccggaaaccaagacgctatttttctcctggtgaaagtagaaaaacttccgagagatttagaacccaacctataacttcagcagaacgaaaggaatcggataggtgcacttcacattcagaaacgccaactgtcgatgatgaagaaaaggtggatgaacgagccaagctgagcgtcgccgccaagaggttgcttttcagggagatggaaaaatcttttgatgaacaaaatgttccaaagcgacgctcaagaaacacagctgtggagcagaggctacgccgtctgcaggacaggtccctcacccagcccatcaccactgaagaggtggtcatcgcagccacATCAATGAACTGAGCCATGTTCAAATCCCTGTTATGTTGATGCCAGATGACTTCAAAGCCTATTCAAAAATAAAGGTGGACAATCACCTTTTTAACAAAGAAAACATGCCGAGCCATTTCAAGTTTAAGGAATACTGCCCGATGGTCTTCCGTAACCTGCGGGAGAGGTTTGGAATTGATGATCAAGATTTCCAGAATTCCCTGACCAGGAGCGCACCCCTCCCCAACGACTCCCAGGCCCGCAGTGGAGCTCGTTTTCACACTTCCTACGACAAAAGATACATCATCAAGACTATTACCAGTGAAGACGTGGCCGAAATGCACAACATCCTGAAGAAATACCACCAGTACATAGTGGAATGTCATGGGATCACCCTTCTTCCCCAGTTCTTGGGCATGTACCGGCTTAATGTTGATGGAGTTGAAATATATGTGATAGTTACAAGAAATGTATTCAGCCACCGTTTGTCTGTGTATAGGAAATACGACTTAAAGGGCTCTACAGTGGCTAGAGAAGCTAGTGACAAAGAAAAGGCCAAAGAACTGCCAACTCTGAAAGATAATGATTTCATTAATGAGGGCCAAAAGATTTATATTGATGACAACAACAAGAAGGTCTTCCTGGAAAAACTAAAAAAGGATGTTGAGTTTCTGGCCCAGCTGAAGCTCATGGACTACAGTCTGCTGGTGGGAATTCATGATGTGGAGAGAGCCGAACAGGAGGAAGTGGAGTGTGAGGAGAACGATGGGGAGGAGGAGGGCGAGAGCGATGGCACCCACCCGGTGGGAACCCCCCCAGATAGCCCCGGGAATACACTGAACAGCTCACCACCCCTGGCTCCCGGGGAGTTCGATCCGAACATCGACGTCTATGGAATTAAGTGCCATGAAAACTCGCCTAGGAAGGAGGTGTACTTCATGGCAATTATTGACATCCTTACTCATTATGATGCAAAAAAGAAAGCTGCCCATGCTGCAAAAACTGTTAAACATGGCGCTGGCGCGGAGATCTCCACCGTGAACCCAGAACAGTATTCAAAGCGCTTTTTGGACTTTATTGGCCACATCTTGACGTAA MKRKERIARRLEGIENDTQPILLQSCTGLVTHRLLEEDTPRYMRASDPASPHIGRSNEEEETSDSSLEKQTRSKYCTETSGVHGDSPYGSGTMDTHSLESKAERIARYKAERRRQLAEKYGLTLDPEADSEYLSRYTKSRKEPDAVEKRGGKSDKQEESSRDASSLYPGTETMGLRTCAGESKDYALHVGDGSSDPEVLLNIENQRRGQELSATRQAHDLSPAAESSSTFSFSGRDSSFTEVPRSPKHAHSSSLQQAASRSPSFGDPQLSPEARPSTGKPKHEWFLQKDSEGDTPSLINWPSRVKVREKLVKEESARNSPELASESVTQRRHQPAPVHYVSFQSEHSAFDRVPSKAAGSTRQPIRGYVQPADTGHTAKLVTPETPENASECSWVASATQNVPKPPSLTVLEGDGRDSPVLHVCESKAEEEEGEGEGEEKEEDVCFTEALEQSKKTLLALEGDGLVRSPEDPSRNEDFGKPAVSTVTLEHQKELENVAQPPQAPHQPTERTGRSEMVLYIQSEPVSQDAKPTGHNREASKKRKVRTRSLSDFTGPPQLQALKYKDPASRRELELPSSKTEGPYGEISMLDTKVSVAQLRSAFLASANACRRPELKSRVERSAEGPGLPTGVERERGSRKPRRYFSPGESRKTSERFRTQPITSAERKESDRCTSHSETPTVDDEEKVDERAKLSVAAKRLLFREMEKSFDEQNVPKRRSRNTAVEQRLRRLQDRSLTQPITTEEVVIAATSMN*AMFKSLLC*CQMTSKPIQK*RWTITFLTKKTCRAISSLRNTARWSSVTCGRGLELMIKISRIP*PGAHPSPTTPRPAVELVFTLPTTKDTSSRLLPVKTWPKCTTS*RNTTST*WNVMGSPFFPSSWACTGLMLMELKYM**LQEMYSATVCLCIGNTT*RALQWLEKLVTKKRPKNCQL*KIMISLMRAKRFILMTTTRRSSWKN*KRMLSFWPS*SSWTTVCWWEFMMWREPNRRKWSVRRTMGRRRARAMAPTRWEPPQIAPGIH*TAHHPWLPGSSIRTSTSMELSAMKTRLGRRCTSWQLLTSLLIMMQKRKLPMLQKLLNMALARRSPP*TQNSIQSAFWTLLATS*R FALSE TRUE hsa-mir-604,hsa-mir-938 chr10:29545004-29545097:-,chr10:29602264-29602346:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32899 LPIN1::MIR3681HG ENSG00000134324.12::ENSG00000224184.7 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LPIN1 ENSG00000134324.12 protein_coding + + chr2:11677595-11827409:+ chr2:11785076:+ chr2:11817721-11967535:+ chr2:11925202:+ MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12674229:+ chr2:11974052-12843039:+ chr2:12814355:+ chr2:11826506,chr2:11785252,chr2:11785253,chr2:11785247,chr2:11785252,chr2:11785252,chr2:11785225,chr2:11785250,chr2:11785249,chr2:11785245,chr2:11785247 chr2:12250111,chr2:12622740,chr2:12622741,chr2:12622737,chr2:12622741,chr2:12622744,chr2:12622737,chr2:12622735,chr2:12622735,chr2:12622735,chr2:12622742 NA NA chr2:11966632,chr2:11925378,chr2:11925379,chr2:11925373,chr2:11925378,chr2:11925378,chr2:11925351,chr2:11925376,chr2:11925375,chr2:11925371,chr2:11925373 chr2:12390237,chr2:12762866,chr2:12762867,chr2:12762863,chr2:12762867,chr2:12762870,chr2:12762863,chr2:12762861,chr2:12762861,chr2:12762861,chr2:12762868 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 48 54 48 53.52 ONLY_REF_SPLICE YES_LDAS 1.0996 GT 1.7056 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-548s chr2:11767444-11767525:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32902 MIR3681HG::GREB1 ENSG00000224184.7::ENSG00000196208.14 CHP212 SRR8616083 SRR8639197 AUTONOMIC_GANGLIA neuroblastoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MIR3681HG ENSG00000224184.7 lncRNA + + chr2:11833926-12702913:+ chr2:12416286:+ chr2:11974052-12843039:+ chr2:12556412:+ GREB1 ENSG00000196208.14 protein_coding + + chr2:11482341-11642788:+ chr2:11556454:+ chr2:11622467-11782914:+ chr2:11696580:+ chr2:12459663,chr2:12459654,chr2:12459664,chr2:12459663 chr2:11551953,chr2:11551953,chr2:11551951,chr2:11551951 NA NA chr2:12599789,chr2:12599780,chr2:12599790,chr2:12599789 chr2:11692079,chr2:11692079,chr2:11692077,chr2:11692077 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 2 11 2 7.91 ONLY_REF_SPLICE YES_LDAS 0.1074 GT 1.5546 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3681 chr2:12199130-12199201:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32905 KMT2A::MLLT3 ENSG00000118058.25::ENSG00000171843.17 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 2142 FALSE NA FALSE NA KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118482495:+ chr11:118307171-118397547:+ chr11:118353210:+ MLLT3 ENSG00000171843.17 protein_coding - - chr9:20341669-20622499:- chr9:20365744:- chr9:20341667-20622498:- chr9:20365742:- chr11:118483636 chr9:20373941 NA NA chr11:118354351 chr9:20373939 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF3915|899-927|0.0021^zf-CXXC|1181-1227|7.4e-17^zf-HC5HC2H_2|1432-1496|0.35^zf-HC5HC2H|1463-1503|2.2^PHD|1467-1512|6e-07^PHD_4|1476-1512|0.096^PHD_2|1479-1513|0.011^zf-HC5HC2H|1510-1563|2.3^PHD_4|1511-1564|1.1e-06^PHD|1515-1563|6.8e-11^PHD_2|1526-1564|8.7e-06^zf-CXXC|1561-1569|2.1^PHD_4|1601-1657|0.0086^PHD|1602-1657|8.6e-10^PHD_2|1616-1632|0.033^Bromodomain|1734-1775|1e-05^zf-HC5HC2H_2|1905-2008|1.7e-12^zf-HC5HC2H|1933-2011|9e-14^PHD|1966-1995|0.95^FYRN|2052-2107|3.6e-20^FYRC|3702-3781|8.3e-24^SET|3873-3978|6.7e-31 none ["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["MLLT3:Oncogene"];["Mitelman","ChimerKB","DepMap2023","TCGA_StarF2019","CCLE_StarF2019","DEEPEST2019","ChimerPub","Cosmic"];INTERCHROMOSOMAL[chr11--chr9] 81 33 81 33 ONLY_REF_SPLICE YES_LDAS 1.4001 GT 1.1033 AG 1.9086 ENST00000710560.1 1-4185 ENST00000630269.2 1117-1698 chr11|+|[0]118436513-118436944[2]|[0]118439024-118439122[2]|[0]118468775-118468844[0]|[1]118471662-118474315[2]|[0]118476805-118476982[0]|[1]118477967-118478201[1]|[2]118480174-118480238[0]|[1]118481715-118482092[0]|[1]118482422-118482495[2]<==>chr9|-|[2]20346443-20346574[0]|[2]20353525-20353596[0]|[2]20354808-20354879[0]|[2]20360742-20360841[2]|[1]20363476-20363605[1]|[0]20365669-20365744[0] atggcgcacagctgtcggtggcgcttccccgcccgacccgggaccaccgggggcggcggcggcggggggcgccggggcctagggggcgccccgcggcaacgcgtcccggccctgctgcttccccccgggcccccggtcggcggtggcggccccggggcgcccccctcccccccggctgtggcggccgcggcggcggcggcgggaagcagcggggctggggttccagggggagcggccgccgcctcagcagcctcctcgtcgtccgcctcgtcttcgtcttcgtcatcgtcctcagcctcttcagggccggccctgctccgggtgggcccgggcttcgacgcggcgctgcaggtctcggccgccatcggcaccaacctgcgccggttccgggccgtgtttggggagagcggcgggggaggcggcagcggagagctaacaacacagatcccatgtagttggagaaccaaaggccacatacatgacaaaaagactgaaccgttcaggttacttgcatggagttggtgcttaaatgatgagcaattcttaggttttggctcagatgaagaagtcagagtgcgaagtcccacaaggtctccttcagttaaaactagtcctcgaaaacctcgtgggagacctagaagtggctctgaccgaaattcagctatcctctcagatccatctgtgttttcccctctaaataaatcagagaccaaatctggagataagatcaagaagaaagattctaaaagtatagaaaagaagagaggaagacctcccaccttccctggagtaaaaatcaaaataacacatggaaaggacatttcagagttaccaaagggaaacaaagaagatagcctgaaaaaaattaaaaggacaccttctgctacgtttcagcaagccacaaagattaaaaaattaagagcaggtaaactctctcctctcaagtctaagtttaagacagggaagcttcaaataggaaggaagggggtacaaattgtacgacggagaggaaggcctccatcaacagaaaggataaagaccccttcgggtctcctcattaattctgaactggaaaagccccagaaagtccggaaagacaaggaaggaacacctccacttacaaaagaagataagacagttgtcagacaaagccctcgaaggattaagccagttaggattattccttcttcaaaaaggacagatgcaaccattgctaagcaactcttacagagggcaaaaaagggggctcaaaagaaaattgaaaaagaagcagctcagctgcagggaagaaaggtgaagacacaggtcaaaaatattcgacagttcatcatgcctgttgtcagtgctatctcctcgcggatcattaagacccctcggcggtttatagaggatgaggattatgaccctccaattaaaattgcccgattagagtctacaccgaatagtagattcagtgccccgtcctgtggatcttctgaaaaatcaagtgcagcttctcagcactcctctcaaatgtcttcagactcctctcgatctagtagccccagtgttgatacctccacagactctcaggcttctgaggagattcaggtacttcctgaggagcggagcgatacccctgaagttcatcctccactgcccatttcccagtccccagaaaatgagagtaatgataggagaagcagaaggtattcagtgtcggagagaagttttggatctagaacgacgaaaaaattatcaactctacaaagtgccccccagcagcagacctcctcgtctccacctccacctctgctgactccaccgccaccactgcagccagcctccagtatctctgaccacacaccttggcttatgcctccaacaatccccttagcatcaccatttttgcctgcttccactgctcctatgcaagggaagcgaaaatctattttgcgagaaccgacatttaggtggacttctttaaagcattctaggtcagagccacaatacttttcctcagcaaagtatgccaaagaaggtcttattcgcaaaccaatatttgataatttccgaccccctccactaactcccgaggacgttggctttgcatctggtttttctgcatctggtaccgctgcttcagcccgattgttttcgccactccattctggaacaaggtttgatatgcacaaaaggagccctcttctgagagctccaagatttactccaagtgaggctcactctagaatatttgagtctgtaaccttgcctagtaatcgaacttctgctggaacatcttcttcaggagtatccaatagaaaaaggaaaagaaaagtgtttagtcctattcgatctgaaccaagatctccttctcactccatgaggacaagaagtggaaggcttagtagttctgagctctcacctctcacccccccgtcttctgtctcttcctcgttaagcatttctgttagtcctcttgccactagtgccttaaacccaacttttacttttccttctcattccctgactcagtctggggaatctgcagagaaaaatcagagaccaaggaagcagactagtgctccggcagagccattttcatcaagtagtcctactcctctcttcccttggtttaccccaggctctcagactgaaagagggagaaataaagacaaggcccccgaggagctgtccaaagatcgagatgctgacaagagcgtggagaaggacaagagtagagagagagaccgggagagagaaaaggagaataagcgggagtcaaggaaagagaaaaggaaaaagggatcagaaattcagagtagttctgctttgtatcctgtgggtagggtttccaaagagaaggttgttggtgaagatgttgccacttcatcttctgccaaaaaagcaacagggcggaagaagtcttcatcacatgattctgggactgatattacttctgtgactcttggggatacaacagctgtcaaaaccaaaatacttataaagaaagggagaggaaatctggaaaaaaccaacttggacctcggcccaactgccccatccctggagaaggagaaaaccctctgcctttccactccttcatctagcactgttaaacattccacttcctccataggctccatgttggctcaggcagacaagcttccaatgactgacaagagggttgccagcctcctaaaaaaggccaaagctcagctctgcaagattgagaagagtaagagtcttaaacaaaccgaccagcccaaagcacagggtcaagaaagtgactcatcagagacctctgtgcgaggaccccggattaaacatgtctgcagaagagcagctgttgcccttggccgaaaacgagctgtgtttcctgatgacatgcccaccctgagtgccttaccatgggaagaacgagaaaagattttgtcttccatggggaatgatgacaagtcatcaattgctggctcagaagatgctgaacctcttgctccacccatcaaaccaattaaacctgtcactagaaacaaggcaccccaggaacctccagtaaagaaaggacgtcgatcgaggcggtgtgggcagtgtcccggctgccaggtgcctgaggactgtggtgtttgtactaattgcttagataagcccaagtttggtggtcgcaatataaagaagcagtgctgcaagatgagaaaatgtcagaatctacaatggatgccttccaaagcctacctgcagaagcaagctaaagctgtgaaaaagaaagagaaaaagtctaagaccagtgaaaagaaagacagcaaagagagcagtgttgtgaagaacgtggtggactctagtcagaaacctaccccatcagcaagagaggatcctgccccaaagaaaagcagtagtgagcctcctccacgaaagcccgtcgaggaaaagagtgaagaagggaatgtctcggcccctgggcctgaatccaaacaggccaccactccagcttccaggaagtcaagcaagcaggtctcccagccagcactggtcatcccgcctcagccacctactacaggaccgccaagaaaagaagttcccaaaaccactcctagtgagcccaagaaaaagcagcctccaccaccagaatcaggtccagagcagagcaaacagaaaaaagtggctccccgcccaagtatccctgtaaaacaaaaaccaaaagaaaagTCTGAACAACCCAGTCCTGCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTTCACACCATCCCAGACCAGGCAACAAGGTCCTTTGAGGTCTATAATGAAAGATCTGCATTCTGATGACAATGAGGAGGAATCAGATGAAGTGGAGGATAACGACAATGACTCTGAAATGGAGAGGCCTGTAAATAGAGGAGGCAGCCGAAGTCGCAGAGTTAGCTTAAGTGATGGCAGCGATAGTGAAAGCAGTTCTGCTTCTTCACCCCTACATCACGAACCTCCACCACCCTTACTAAAAACCAACAACAACCAGATTCTTGAAGTGAAAAGTCCAATAAAGCAAAGCAAATCAGATAAGCAAATAAAGAATGGTGAATGTGACAAGGCATACCTAGATGAACTGGTAGAGCTTCACAGAAGGTTAATGACATTGAGAGAAAGACACATTCTGCAGCAGATCGTGAACCTTATAGAAGAAACTGGACACTTTCATATCACAAACACAACATTTGATTTTGATCTTTGCTCGCTGGACAAAACCACAGTCCGTAAACTACAGAGTTACCTGGAAACATCTGGAACATCCTGA MAHSCRWRFPARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLRRFRAVFGESGGGGGSGELTTQIPCSWRTKGHIHDKKTEPFRLLAWSWCLNDEQFLGFGSDEEVRVRSPTRSPSVKTSPRKPRGRPRSGSDRNSAILSDPSVFSPLNKSETKSGDKIKKKDSKSIEKKRGRPPTFPGVKIKITHGKDISELPKGNKEDSLKKIKRTPSATFQQATKIKKLRAGKLSPLKSKFKTGKLQIGRKGVQIVRRRGRPPSTERIKTPSGLLINSELEKPQKVRKDKEGTPPLTKEDKTVVRQSPRRIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPVVSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRSRRYSVSERSFGSRTTKKLSTLQSAPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASTAPMQGKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSASGTAASARLFSPLHSGTRFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSNRTSAGTSSSGVSNRKRKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNPTFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKVVGEDVATSSSAKKATGRKKSSSHDSGTDITSVTLGDTTAVKTKILIKKGRGNLEKTNLDLGPTAPSLEKEKTLCLSTPSSSTVKHSTSSIGSMLAQADKLPMTDKRVASLLKKAKAQLCKIEKSKSLKQTDQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEDAEPLAPPIKPIKPVTRNKAPQEPPVKKGRRSRRCGQCPGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKKEKKSKTSEKKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQKKVAPRPSIPVKQKPKEKSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKDLHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQILEVKSPIKQSKSDKQIKNGECDKAYLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLETSGTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 (AF9) 1 ALL leukaemia_lymphoma fusion translocation 32909 DDX39B::CSNK2A1 ENSG00000198563.14::ENSG00000101266.19 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DDX39B ENSG00000198563.14 protein_coding - - chr6:31530219-31542448:- chr6:31535367:- chr6:31497996-31510225:- chr6:31503144:- CSNK2A1 ENSG00000101266.19 protein_coding - - chr20:472498-543835:- chr20:508660:- chr20:453142-524479:- chr20:489304:- chr6:31534626,chr6:31534628 chr20:511981,chr20:511980 NA NA chr6:31502403,chr6:31502405 chr20:492625,chr20:492624 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CSNK2A1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr20] 45 24 45 24 ONLY_REF_SPLICE YES_LDAS 0.8475 GT 1.8892 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Casein kinase II subunit alpha CMGC CK2 P68400 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32915 SNAPC3::KMT2A ENSG00000164975.16::ENSG00000118058.25 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 2146 FALSE NA FALSE NA SNAPC3 ENSG00000164975.16 protein_coding + + chr9:15422734-15465953:+ chr9:15458067:+ chr9:15422732-15465951:+ chr9:15458065:+ KMT2A ENSG00000118058.25 protein_coding + + chr11:118436456-118526832:+ chr11:118488614:+ chr11:118307171-118397547:+ chr11:118359329:+ chr9:15458590,chr9:15458590,chr9:15458588 chr11:118485410,chr11:118485411,chr11:118485399 NA NA chr9:15458588,chr9:15458588,chr9:15458586 chr11:118356125,chr11:118356126,chr11:118356114 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SNAPC3|202-405|9e-81 none ["SNAPC3:Oncogene"];["KMT2A:Oncogene","KMT2A:FoundationOne_panel","KMT2A:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr11] 7 2 7 2 ONLY_REF_SPLICE YES_LDAS 0.1106 GT 1.9219 AG 1.8295 ENST00000610884.4 1-1088 ENST00000691053.1 4333-11991 chr9|+|[0]15422880-15423193[1]|[2]15423909-15423986[1]|[2]15433552-15433636[2]|[0]15444602-15444706[2]|[0]15447095-15447244[2]|[0]15451320-15451402[1]|[2]15453041-15453205[1]|[2]15457960-15458067[1]<==>chr11|+|[0]118488614-118488760[2]|[0]118489792-118489887[2]|[0]118490129-118490249[0]|[1]118491196-118491309[0]|[1]118491744-118491928[2]|[0]118493057-118493230[2]|[0]118494288-118494398[2]|[0]118494694-118494767[1]|[2]118495700-118495893[0]|[1]118496261-118496367[2]|[0]118496724-118496804[2]|[0]118497936-118498073[2]|[0]118498370-118498528[2]|[0]118499303-118499420[0]|[1]118499835-118499913[1]|[2]118500987-118501147[0]|[1]118501672-118501857[0]|[1]118502398-118506646[1]|[2]118507529-118507609[1]|[2]118509136-118509200[0]|[1]118509948-118510118[0]|[1]118511951-118512025[0]|[1]118519618-118519792[1]|[2]118519957-118520064[1]|[2]118520802-118520885[1]|[2]118521288-118521417[2]|[0]118521897-118522172[2] atggctgaaggaagccgaggtggccctacgtgtagcggggtgggtggcaggcaggacccagtctccggcagtggcggctgcaactttccagagtatgagcttcccgagctaaatacgcgcgctttccatgtgggcgcctttggggagctgtggcggggccgtctgcgcggggccggggacttgtcgctgagggagccgccggcatccgctctgcctgggagccaggcagctgactccgaccgggaggatgccgcggtggccagggatctggactgcagcctggaggcggcggctgagctgagggcggtgtgcggccttgataaactgaaatgccttgaggacggtgaggatccagaagtcattccggagaatactgacctggtgactttgggggttagaaaaaggttcttggaacatcgggaagaaaccattacaatagatcgagcctgcagacaagaaacattcgtttatgagatggagtcacatgccataggaaaaaagcctgaaaattcagcagacatgattgaagaaggggagcttatcctatctgtgaatatcttgtaccctgttatatttcataagcacaaagaacacaaaccataccaaacaatgctggtgttgggcagtcaaaaactcacacaactgagggattcaattcgatgtgtcagtgacctccagattggtggtgaattcagcaacactcctgaccaagcccctgagcacatcagcaaagacctatacaaatcagccttcttttattttgaaggaacattttataatgataaaagatacccagaatgcagagatttgagcagaactatcattgagtggtcagagtcccatgatagaggctatggaaagtttcagactgctagaatggaagatttcaccttcaatgacttgtgtattaaactgggttttccttacttatactgtcatcagggagactgtgaacatgtcattgtcattactgacataaggcttgtgcatcatgatgactgcttggataggacattgtatcccctccttatcaagaagcattggctatggaccagaaaatgttttgtttgtaaaatgtatacagccagTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTCCACAAGTTTTGTTTAGAGGAGAACGAGCGCCCTCTGGAGGACCAGCTGGAAAATTGGTGTTGTCGTCGTTGCAAATTCTGTCACGTTTGTGGAAGGCAACATCAGGCTACAAAGCAGCTGCTGGAGTGTAATAAGTGCCGAAACAGCTATCACCCTGAGTGCCTGGGACCAAACTACCCCACCAAACCCACAAAGAAGAAGAAAGTCTGGATCTGTACCAAGTGTGTTCGCTGTAAGAGCTGTGGATCCACAACTCCAGGCAAAGGGTGGGATGCACAGTGGTCTCATGATTTCTCACTGTGTCATGATTGCGCCAAGCTCTTTGCTAAAGGAAACTTCTGCCCTCTCTGTGACAAATGTTATGATGATGATGACTATGAGAGTAAGATGATGCAATGTGGAAAGTGTGATCGCTGGGTCCATTCCAAATGTGAGAATCTTTCAGATGAGATGTATGAGATTCTATCTAATCTGCCAGAAAGTGTGGCCTACACTTGTGTGAACTGTACTGAGCGGCACCCTGCAGAGTGGCGACTGGCCCTTGAAAAAGAGCTGCAGATTTCTCTGAAGCAAGTTCTGACAGCTTTGTTGAATTCTCGGACTACCAGCCATTTGCTACGCTACCGGCAGGCTGCCAAGCCTCCAGACTTAAATCCCGAGACAGAGGAGAGTATACCTTCCCGCAGCTCCCCCGAAGGACCTGATCCACCAGTTCTTACTGAGGTCAGCAAACAGGATGATCAGCAGCCTTTAGATCTAGAAGGAGTCAAGAGGAAGATGGACCAAGGGAATTACACATCTGTGTTGGAGTTCAGTGATGATATTGTGAAGATCATTCAAGCAGCCATTAATTCAGATGGAGGACAGCCAGAAATTAAAAAAGCCAACAGCATGGTCAAGTCCTTCTTCATTCGGCAAATGGAACGTGTTTTTCCATGGTTCAGTGTCAAAAAGTCCAGGTTTTGGGAGCCAAATAAAGTATCAAGCAACAGTGGGATGTTACCAAACGCAGTGCTTCCACCTTCACTTGACCATAATTATGCTCAGTGGCAGGAGCGAGAGGAAAACAGCCACACTGAGCAGCCTCCTTTAATGAAGAAAATCATTCCAGCTCCCAAACCCAAAGGTCCTGGAGAACCAGACTCACCAACTCCTCTGCATCCTCCTACACCACCAATTTTGAGTACTGATAGGAGTCGAGAAGACAGTCCAGAGCTGAACCCACCCCCAGGCATAGAAGACAATAGACAGTGTGCGTTATGTTTGACTTATGGTGATGACAGTGCTAATGATAGCAGAATCGTTAAGAGCCCGAGTTCTGCCGCCTGCCTGAATACATTTCTGTGCTTAACTGCCTACTTATTGACTTTGGATGCTGGTCGTTTACTATATATTGGCCAAAATGAGTGGACACATGTAAATTGTGCTTTGTGGTCAGCGGAAGTGTTTGAAGATGATGACGGATCACTAAAGAATGTGCATATGGCTGTGATCAGGGGCAAGCAGCTGAGATGTGAATTCTGCCAAAAGCCAGGAGCCACCGTGGGTTGCTGTCTCACATCCTGCACCAGCAACTATCACTTCATGTGTTCCCGAGCCAAGAACTGTGTCTTTCTGGATGATAAAAAAGTATATTGCCAACGACATCGGGATTTGATCAAAGGCGAAGTGGTTCCTGAGAATGGATTTGAAGTTTTCAGAAGAGTGTTTGTGGACTTTGAAGGAATCAGCTTGAGAAGGAAGTTTCTCAATGGCTTGGAACCAGAAAATATCCACATGATGATTGGGTCTATGACAATCGACTGCTTAGGAATTCTAAATGATCTCTCCGACTGTGAAGATAAGCTCTTTCCTATTGGATATCAGTGTTCCAGGGTATACTGGAGCACCACAGATGCTCGCAAGCGCTGTGTATATACATGCAAGATAGTGGAGTGCCGTCCTCCAGTCGTAGAGCCGGATATCAACAGCACTGTTGAACATGATGAAAACAGGACCATTGCCCATAGTCCAACATCTTTTACAGAAAGTTCATCAAAAGAGAGTCAAAACACAGCTGAAATTATAAGTCCTCCATCACCAGACCGACCTCCTCATTCACAAACCTCTGGCTCCTGTTATTATCATGTCATCTCAAAGGTCCCCAGGATTCGAACACCCAGTTATTCTCCAACACAGAGATCCCCTGGCTGTCGACCGTTGCCTTCTGCAGGAAGTCCTACCCCAACCACTCATGAAATAGTCACAGTAGGTGATCCTTTACTCTCCTCTGGACTTCGAAGCATTGGCTCCAGGCGTCACAGTACCTCTTCCTTATCACCCCAGCGGTCCAAACTCCGGATAATGTCTCCAATGAGAACTGGGAATACTTACTCTAGGAATAATGTTTCCTCAGTCTCCACCACCGGGACCGCTACTGATCTTGAATCAAGTGCCAAAGTAGTTGATCATGTCTTAGGGCCACTGAATTCAAGTACTAGTTTAGGGCAAAACACTTCCACCTCTTCAAATTTGCAAAGGACAGTGGTTACTGTAGGCAATAAAAACAGTCACTTGGATGGATCTTCATCTTCAGAAATGAAGCAGTCCAGTGCTTCAGACTTGGTGTCCAAGAGCTCCTCTTTAAAGGGAGAGAAGACCAAAGTGCTGAGTTCCAAGAGCTCAGAGGGATCTGCACATAATGTGGCTTACCCTGGAATTCCTAAACTGGCCCCACAGGTTCATAACACAACATCTAGAGAACTGAATGTTAGTAAAATCGGCTCCTTTGCTGAACCCTCTTCAGTGTCGTTTTCTTCTAAAGAGGCCCTCTCCTTCCCACACCTCCATTTGAGAGGGCAAAGGAATGATCGAGACCAACACACAGATTCTACCCAATCAGCAAACTCCTCTCCAGATGAAGATACTGAAGTCAAAACCTTGAAGCTATCTGGAATGAGCAACAGATCATCCATTATCAACGAACATATGGGATCTAGTTCCAGAGATAGGAGACAGAAAGGGAAAAAATCCTGTAAAGAAACTTTCAAAGAAAAGCATTCCAGTAAATCTTTTTTGGAACCTGGTCAGGTGACAACTGGTGAGGAAGGAAACTTGAAGCCAGAGTTTATGGATGAGGTTTTGACTCCTGAGTATATGGGCCAACGACCATGTAACAATGTTTCTTCTGATAAGATTGGTGATAAAGGCCTTTCTATGCCAGGAGTCCCCAAAGCTCCACCCATGCAAGTAGAAGGATCTGCCAAGGAATTACAGGCACCACGGAAACGCACAGTCAAAGTGACACTGACACCTCTAAAAATGGAAAATGAGAGTCAATCCAAAAATGCCCTGAAAGAAAGTAGTCCTGCTTCCCCTTTGCAAATAGAGTCAACATCTCCCACAGAACCAATTTCAGCCTCTGAAAATCCAGGAGATGGTCCAGTGGCCCAACCAAGCCCCAATAATACCTCATGCCAGGATTCTCAAAGTAACAACTATCAGAATCTTCCAGTACAGGACAGAAACCTAATGCTTCCAGATGGCCCCAAACCTCAGGAGGATGGCTCTTTTAAAAGGAGGTATCCCCGTCGCAGTGCCCGTGCACGTTCTAACATGTTTTTTGGGCTTACCCCACTCTATGGAGTAAGATCCTATGGTGAAGAAGACATTCCATTCTACAGCAGCTCAACTGGGAAGAAGCGAGGCAAGAGATCAGCTGAAGGACAGGTGGATGGGGCCGATGACTTAAGCACTTCAGATGAAGACGACTTATACTATTACAACTTCACTAGAACAGTGATTTCTTCAGGTGGAGAGGAACGACTGGCATCCCATAATTTATTTCGGGAGGAGGAACAGTGTGATCTTCCAAAAATCTCACAGTTGGATGGTGTTGATGATGGGACAGAGAGTGATACTAGTGTCACAGCCACAACAAGGAAAAGCAGCCAGATTCCAAAAAGAAATGGTAAAGAAAATGGAACAGAGAACTTAAAGATTGATAGACCTGAAGATGCTGGGGAGAAAGAACATGTCACTAAGAGTTCTGTTGGCCACAAAAATGAGCCAAAGATGGATAACTGCCATTCTGTAAGCAGAGTTAAAACACAGGGACAAGATTCCTTGGAAGCTCAGCTCAGCTCATTGGAGTCAAGCCGCAGAGTCCACACAAGTACCCCCTCCGACAAAAATTTACTGGACACCTATAATACTGAGCTCCTGAAATCAGATTCAGACAATAACAACAGTGATGACTGTGGGAATATCCTGCCTTCAGACATTATGGACTTTGTACTAAAGAATACTCCATCCATGCAGGCTTTGGGTGAGAGCCCAGAGTCATCTTCATCAGAACTCCTGAATCTTGGTGAAGGATTGGGTCTTGACAGTAATCGTGAAAAAGACATGGGTCTTTTTGAAGTATTTTCTCAGCAGCTGCCTACAACAGAACCTGTGGATAGTAGTGTCTCTTCCTCTATCTCAGCAGAGGAACAGTTTGAGTTGCCTCTAGAGCTACCATCTGATCTGTCTGTCTTGACCACCCGGAGTCCCACTGTCCCCAGCCAGAATCCCAGTAGACTAGCTGTTATCTCAGACTCAGGGGAGAAGAGAGTAACCATCACAGAAAAATCTGTAGCCTCCTCTGAAAGTGACCCAGCACTGCTGAGCCCAGGAGTAGATCCAACTCCTGAAGGCCACATGACTCCTGATCATTTTATCCAAGGACACATGGATGCAGACCACATCTCTAGCCCTCCTTGTGGTTCAGTAGAGCAAGGTCATGGCAACAATCAGGATTTAACTAGGAACAGTAGCACCCCTGGCCTTCAGGTACCTGTTTCCCCAACTGTTCCCATCCAGAACCAGAAGTATGTGCCCAATTCTACTGATAGTCCTGGCCCGTCTCAGATTTCCAATGCAGCTGTCCAGACCACTCCACCCCACCTGAAGCCAGCCACTGAGAAACTCATAGTTGTTAACCAGAACATGCAGCCACTTTATGTTCTCCAAACTCTTCCAAATGGAGTGACCCAAAAAATCCAATTGACCTCTTCTGTTAGTTCTACACCCAGTGTGATGGAGACAAATACTTCAGTATTGGGACCCATGGGAGGTGGTCTCACCCTTACCACAGGACTAAATCCAAGCTTGCCAACTTCTCAATCTTTGTTCCCTTCTGCTAGCAAAGGATTGCTACCCATGTCTCATCACCAGCACTTACATTCCTTCCCTGCAGCTACTCAAAGTAGTTTCCCACCAAACATCAGCAATCCTCCTTCAGGCCTGCTTATTGGGGTTCAGCCTCCTCCGGATCCCCAACTTTTGGTTTCAGAATCCAGCCAGAGGACAGACCTCAGTACCACAGTAGCCACTCCATCCTCTGGACTCAAGAAAAGACCCATATCTCGTCTACAGACCCGAAAGAATAAAAAACTTGCTCCCTCTAGTACCCCTTCAAACATTGCCCCTTCTGATGTGGTTTCTAATATGACATTGATTAACTTCACACCCTCCCAGCTTCCTAATCATCCAAGTCTGTTAGATTTGGGGTCACTTAATACTTCATCTCACCGAACTGTCCCCAACATCATAAAAAGATCTAAATCTAGCATCATGTATTTTGAACCGGCACCCCTGTTACCACAGAGTGTGGGAGGAACTGCTGCCACAGCGGCAGGCACATCAACAATAAGCCAGGATACTAGCCACCTCACATCAGGGTCTGTGTCTGGCTTGGCATCCAGTTCCTCTGTCTTGAATGTTGTATCCATGCAAACTACCACAACCCCTACAAGTAGTGCGTCAGTTCCAGGACACGTCACCTTAACCAACCCAAGGTTGCTTGGTACCCCAGATATTGGCTCAATAAGCAATCTTTTAATCAAAGCTAGCCAGCAGAGCCTGGGGATTCAGGACCAGCCTGTGGCTTTACCGCCAAGTTCAGGAATGTTTCCACAACTGGGGACATCACAGACCCCCTCTACTGCTGCAATAACAGCGGCATCTAGCATCTGTGTGCTCCCCTCCACTCAGACTACGGGCATAACAGCCGCTTCACCTTCTGGGGAAGCAGACGAACACTATCAGCTTCAGCATGTGAACCAGCTCCTTGCCAGCAAAACTGGGATTCATTCTTCCCAGCGTGATCTTGATTCTGCTTCAGGGCCCCAGGTATCCAACTTTACCCAGACGGTAGACGCTCCTAATAGCATGGGACTGGAGCAGAACAAGGCTTTATCCTCAGCTGTGCAAGCCAGCCCCACCTCTCCTGGGGGTTCTCCATCCTCTCCATCTTCTGGACAGCGGTCAGCAAGCCCTTCAGTGCCGGGTCCCACTAAACCCAAACCAAAAACCAAACGGTTTCAGCTGCCTCTAGACAAAGGGAATGGCAAGAAGCACAAAGTTTCCCATTTGCGGACCAGTTCTTCTGAAGCACACATTCCAGACCAAGAAACGACATCCCTGACCTCAGGCACAGGGACTCCAGGAGCAGAGGCTGAGCAGCAGGATACAGCTAGCGTGGAGCAGTCCTCCCAGAAGGAGTGTGGGCAACCTGCAGGGCAAGTCGCTGTTCTTCCGGAAGTTCAGGTGACCCAAAATCCAGCAAATGAACAAGAAAGTGCAGAACCTAAAACAGTGGAAGAAGAGGAAAGTAATTTCAGCTCCCCACTGATGCTTTGGCTTCAGCAAGAACAAAAGCGGAAGGAAAGCATTACTGAGAAAAAACCCAAGAAAGGACTTGTTTTTGAAATTTCCAGTGATGATGGCTTTCAGATCTGTGCAGAAAGTATTGAAGATGCCTGGAAGTCATTGACAGATAAAGTCCAGGAAGCTCGATCAAATGCCCGCCTAAAGCAGCTCTCATTTGCAGGTGTTAACGGTTTGAGGATGCTGGGGATTCTCCATGATGCAGTTGTGTTCCTCATTGAGCAGCTGTCTGGTGCCAAGCACTGTCGAAATTACAAATTCCGTTTCCACAAGCCAGAGGAGGCCAATGAACCCCCCTTGAACCCTCACGGCTCAGCCAGGGCTGAAGTCCACCTCAGGAAGTCAGCATTTGACATGTTTAACTTCCTGGCTTCTAAACATCGTCAGCCTCCTGAATACAACCCCAATGATGAAGAAGAGGAGGAGGTACAGCTGAAGTCAGCTCGGAGGGCAACTAGCATGGATCTGCCAATGCCCATGCGCTTCCGGCACTTAAAAAAGACTTCTAAGGAGGCAGTTGGTGTCTACAGGTCTCCCATCCATGGCCGGGGTCTTTTCTGTAAGAGAAACATTGATGCAGGTGAGATGGTGATTGAGTATGCCGGCAACGTCATCCGCTCCATCCAGACTGACAAGCGGGAAAAGTATTACGACAGCAAGGGCATTGGTTGCTATATGTTCCGAATTGATGACTCAGAGGTAGTGGATGCCACCATGCATGGAAATGCTGCACGCTTCATCAATCACTCGTGTGAGCCTAACTGCTATTCTCGGGTCATCAATATTGATGGGCAGAAGCACATTGTCATCTTTGCCATGCGTAAGATCTACCGAGGAGAGGAACTCACTTACGACTATAAGTTCCCCATTGAGGATGCCAGCAACAAGCTGCCCTGCAACTGTGGCGCCAAGAAATGCCGGAAGTTCCTAAACTAA MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGDLSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTASLCIAKSVVSPSTSFV*RRTSALWRTSWKIGVVVVANSVTFVEGNIRLQSSCWSVISAETAITLSAWDQTTPPNPQRRRKSGSVPSVFAVRAVDPQLQAKGGMHSGLMISHCVMIAPSSLLKETSALSVTNVMMMMTMRVR*CNVESVIAGSIPNVRIFQMRCMRFYLICQKVWPTLV*TVLSGTLQSGDWPLKKSCRFL*SKF*QLC*ILGLPAICYATGRLPSLQT*IPRQRRVYLPAAPPKDLIHQFLLRSANRMISSL*I*KESRGRWTKGITHLCWSSVMIL*RSFKQPLIQMEDSQKLKKPTAWSSPSSFGKWNVFFHGSVSKSPGFGSQIKYQATVGCYQTQCFHLHLTIIMLSGRSERKTATLSSLL**RKSFQLPNPKVLENQTHQLLCILLHHQF*VLIGVEKTVQS*THPQA*KTIDSVRYV*LMVMTVLMIAESLRARVLPPA*IHFCA*LPTY*LWMLVVYYILAKMSGHM*IVLCGQRKCLKMMTDH*RMCIWL*SGASS*DVNSAKSQEPPWVAVSHPAPATITSCVPEPRTVSFWMIKKYIANDIGI*SKAKWFLRMDLKFSEECLWTLKESA*EGSFSMAWNQKIST**LGL*QSTA*EF*MISPTVKISSFLLDISVPGYTGAPQMLASAVYIHAR*WSAVLQS*SRISTALLNMMKTGPLPIVQHLLQKVHQKRVKTQLKL*VLHHQTDLLIHKPLAPVIIMSSQRSPGFEHPVILQHRDPLAVDRCLLQEVLPQPLMK*SQ*VILYSPLDFEALAPGVTVPLPYHPSGPNSG*CLQ*ELGILTLGIMFPQSPPPGPLLILNQVPK*LIMS*GH*IQVLV*GKTLPPLQICKGQWLL*AIKTVTWMDLHLQK*SSPVLQTWCPRAPL*RERRPKC*VPRAQRDLHIMWLTLEFLNWPHRFITQHLEN*MLVKSAPLLNPLQCRFLLKRPSPSHTSI*EGKGMIETNTQILPNQQTPLQMKILKSKP*SYLE*ATDHPLSTNIWDLVPEIGDRKGKNPVKKLSKKSIPVNLFWNLVR*QLVRKET*SQSLWMRF*LLSIWANDHVTMFLLIRLVIKAFLCQESPKLHPCK*KDLPRNYRHHGNAQSK*H*HL*KWKMRVNPKMP*KKVVLLPLCK*SQHLPQNQFQPLKIQEMVQWPNQAPIIPHARILKVTTIRIFQYRTET*CFQMAPNLRRMALLKGGIPVAVPVHVLTCFLGLPHSME*DPMVKKTFHSTAAQLGRSEARDQLKDRWMGPMT*ALQMKTTYTITTSLEQ*FLQVERNDWHPIIYFGRRNSVIFQKSHSWMVLMMGQRVILVSQPQQGKAARFQKEMVKKMEQRT*RLIDLKMLGRKNMSLRVLLATKMSQRWITAIL*AELKHRDKIPWKLSSAHWSQAAESTQVPPPTKIYWTPIILSS*NQIQTITTVMTVGISCLQTLWTLY*RILHPCRLWVRAQSHLHQNS*ILVKDWVLTVIVKKTWVFLKYFLSSCLQQNLWIVVSLPLSQQRNSLSCL*SYHLICLS*PPGVPLSPARIPVD*LLSQTQGRRE*PSQKNL*PPLKVTQHC*AQE*IQLLKAT*LLIILSKDTWMQTTSLALLVVQ*SKVMATIRI*LGTVAPLAFRYLFPQLFPSRTRSMCPILLIVLARLRFPMQLSRPLHPT*SQPLRNS*LLTRTCSHFMFSKLFQME*PKKSN*PLLLVLHPV*WRQILQYWDPWEVVSPLPQD*IQACQLLNLCSLLLAKDCYPCLITSTYIPSLQLLKVVSHQTSAILLQACLLGFSLLRIPNFWFQNPARGQTSVPQ*PLHPLDSRKDPYLVYRPERIKNLLPLVPLQTLPLLMWFLI*H*LTSHPPSFLIIQVC*IWGHLILHLTELSPTS*KDLNLASCILNRHPCYHRVWEELLPQRQAHQQ*ARILATSHQGLCLAWHPVPLS*MLYPCKLPQPLQVVRQFQDTSP*PTQGCLVPQILAQ*AIF*SKLASRAWGFRTSLWLYRQVQECFHNWGHHRPPLLLQ*QRHLASVCSPPLRLRA*QPLHLLGKQTNTISFSM*TSSLPAKLGFILPSVILILLQGPRYPTLPRR*TLLIAWDWSRTRLYPQLCKPAPPLLGVLHPLHLLDSGQQALQCRVPLNPNQKPNGFSCL*TKGMARSTKFPICGPVLLKHTFQTKKRHP*PQAQGLQEQRLSSRIQLAWSSPPRRSVGNLQGKSLFFRKFR*PKIQQMNKKVQNLKQWKKRKVISAPH*CFGFSKNKSGRKALLRKNPRKDLFLKFPVMMAFRSVQKVLKMPGSH*QIKSRKLDQMPA*SSSHLQVLTV*GCWGFSMMQLCSSLSSCLVPSTVEITNSVSTSQRRPMNPP*TLTAQPGLKSTSGSQHLTCLTSWLLNIVSLLNTTPMMKKRRRYS*SQLGGQLAWICQCPCASGT*KRLLRRQLVSTGLPSMAGVFSVRETLMQVRW*LSMPATSSAPSRLTSGKSITTARALVAICSELMTQR*WMPPCMEMLHASSITRVSLTAILGSSILMGRSTLSSLPCVRSTEERNSLTTISSPLRMPATSCPATVAPRNAGSS*T FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE lysine (K)-specific methyltransferase 2A 1 Yes AML, ALL leukaemia_lymphoma oncogene, fusion translocation, other 32917 VAV2::ELAVL2 ENSG00000160293.17::ENSG00000107105.15 THP1 SRR8616091 SRR8670675 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 2147 FALSE NA FALSE NA VAV2 ENSG00000160293.17 protein_coding - - chr9:133761894-133992604:- chr9:133992075:- chr9:136627016-136857726:- chr9:136857197:- ELAVL2 ENSG00000107105.15 protein_coding - - chr9:23690104-23826337:- chr9:23762249:- chr9:23690102-23826335:- chr9:23762247:- chr9:133954205,chr9:133954207 chr9:23802638,chr9:23802637 NA NA chr9:136819327,chr9:136819329 chr9:23802636,chr9:23802635 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH|2-118|3.3e-24^CAMSAP_CH|19-103|3.6e-29^CDC24|32-115|2.5e-05^C1_2|157-165|6.9^RhoGEF-PARTIAL|198-204~|3e-43 RRM_1-PARTIAL|~73-140|2.8e-25^RRM_5-PARTIAL|~73-144|6.1e-06^RRM_7-PARTIAL|~73-95|0.11^BRAP2-PARTIAL|~73-131|0.00046^RRM_2-PARTIAL|~73-135|0.00032^YqeY-PARTIAL|~73-88|0.00033^RRM_occluded|74-142|0.00031^RRM_3|77-142|0.0024^BRAP2|151-219|0.00073^RRM_5|155-222|0.0051^RRM_1|156-222|1.3e-22^RRM_7|156-181|0.00062^RRM_occluded|156-182|0.072^RRM_3|156-215|0.0005^YqeY|161-175|1.6^RRM_5|303-382|1.4e-07^RRM_1|308-377|1.3e-24^RRM_7|308-333|0.002^BRAP2|331-346|1.7^RRM_2|340-361|0.75^RRM_occluded|351-380|0.015 ["VAV2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:109.94Mb] 4 6 4 6 ONLY_REF_SPLICE YES_LDAS 0.1228 GT 1.8892 AG 1.9899 ENST00000371851.1 1-204 ENST00000380110.8 73-1170 chr9|-|[2]133992075-133992278[0]<==>chr9|-|[2]23692557-23692887[2]|[1]23693448-23693486[2]|[1]23701379-23701604[1]|[0]23704918-23705071[0]|[2]23731022-23731125[1]|[0]23762006-23762249[0] atggagcagtggcggcagtgcggccgctggctcatcgattgcaaggtcctgccgcccaaccaccgggtggtgtggccctcggccgtggtcttcgacctggcgcaggcgctgcgcgacggggtccttctgtgccagctgctgcacaacctctcccccggctccatcgacctcaaggacatcaacttccggccgcagatgtcccagCAGGTAATTGCTGCCATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACCATAAACAACAACTGTTCGTCACCAGTTGACTCTGGGAACACAGAAGACAGCAAGACCAACTTAATAGTCAACTACCTTCCTCAGAACATGACACAGGAGGAACTAAAGAGTCTCTTTGGGAGCATTGGTGAAATAGAGTCCTGTAAGCTTGTAAGAGACAAAATAACAGGGCAGAGCTTGGGATATGGCTTTGTGAACTACATTGACCCCAAGGATGCAGAGAAAGCTATCAACACCCTGAATGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGCCCAAGTTCAGCTTCTATCAGAGATGCAAATTTATATGTCAGCGGACTTCCAAAAACAATGACCCAGAAGGAGTTGGAACAGCTTTTTTCACAATATGGACGCATTATTACTTCTCGTATTCTTGTCGACCAGGTCACTGGCATATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGAATTGAGGCAGAAGAAGCTATCAAAGGCCTAAATGGCCAGAAACCTCCCGGTGCCACGGAGCCAATCACTGTAAAGTTTGCTAATAACCCAAGCCAAAAAACCAATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTATCCAGGACCGCTAGCTCAGCAGGCACAGCGTTTTAGGTTGGACAATCTGCTCAATATGGCTTATGGAGTAAAGAGCAGGTTTTCTCCAATGACCATTGACGGAATGACCAGTTTGGCTGGAATTAATATCCCTGGGCACCCTGGAACAGGGTGGTGTATATTTGTGTACAACCTGGCTCCTGACGCAGATGAGAGTATCCTGTGGCAAATGTTTGGGCCTTTTGGAGCTGTCACCAATGTGAAGGTCATCCGTGACTTTAACACCAATAAATGCAAAGGTTTTGGATTTGTGACTATGACAAACTATGATGAGGCTGCCATGGCGATAGCTAGCCTCAATGGATACCGTCTGGGAGACAGAGTACTGCAGGTCTCCTTTAAGACAAACAAAACGCACAAAGCCTAA MEQWRQCGRWLIDCKVLPPNHRVVWPSAVVFDLAQALRDGVLLCQLLHNLSPGSIDLKDINFRPQMSQQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32918 EIF4H::ELN ENSG00000106682.16::ENSG00000049540.19 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2150 TRUE 3953 TRUE 1490 EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74174442:+ chr7:73588561-73611452:+ chr7:73588772:+ ELN ENSG00000049540.19 protein_coding + + chr7:74027789-74069907:+ chr7:74063153:+ chr7:73442119-73484237:+ chr7:73477483:+ chr7:74175727,chr7:74175727 chr7:74060981,chr7:74060978 NA NA chr7:73590057,chr7:73590057 chr7:73475311,chr7:73475308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_1-PARTIAL|45-59~|3.8e-17 none ["ELN:Oncogene"];["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.10Mb] 422 1 422 0.68 ONLY_REF_SPLICE YES_LDAS 4.2894 GT 1.3383 AG 1.8892 ENST00000677998.1 1-59 ENST00000458204.5 1757-2145 chr7|+|[0]74174384-74174442[1]<==>chr7|+|[1]74063153-74063224[0]|[1]74063310-74063369[0]|[1]74063621-74063695[0]|[1]74065694-74065732[0]|[1]74065944-74065997[0]|[1]74066732-74066776[0]|[1]74068657-74068700[2] atggcggacttcgacacctacgacgatcgggcctacagcagcttcggcggcggcagaggGAGCAGCAGTGCCTGGGGTCCTTGGAGGGCTCGGGGCTCTCGGTGGAGTAGGCATCCCAGGCGGTGTGGTGGGAGCCGGACCCGCCGCCGCCGCTGCCGCAGCCAAAGCTGCTGCCAAAGCCGCCCAGTTTGGCCTAGTGGGAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGAGGTATACCTCCAGCTGCAGCCGCTAAAGCAGCTAAATACGGTGCTGCTGGCCTTGGAGGTGTCCTAGGGGGTGCCGGGCAGTTCCCACTTGGAGGAGTGGCAGCAAGACCTGGCTTCGGATTGTCTCCCATTTTCCCAGGTGGGGCCTGCCTGGGGAAAGCTTGTGGCCGGAAGAGAAAATGA MADFDTYDDRAYSSFGGGRGSSSAWGPWRARGSRWSRHPRRCGGSRTRRRRCRSQSCCQSRPVWPSGSRWARRTRSRRAWSSRCWGPWRYTSSCSR*SS*IRCCWPWRCPRGCRAVPTWRSGSKTWLRIVSHFPRWGLPGESLWPEEKM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 73604636|73604248|73604248 FALSE|FALSE|FALSE 73449694|73449694|73461026 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE elastin 2 B-ALL leukaemia_lymphoma fusion translocation 32919 NCLN::GNA11 ENSG00000125912.11::ENSG00000088256.9 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2152 TRUE 3954 TRUE 1491 NCLN ENSG00000125912.11 protein_coding + + chr19:3185563-3209575:+ chr19:3193428:+ chr19:3185561-3209573:+ chr19:3193426:+ GNA11 ENSG00000088256.9 protein_coding + + chr19:3094362-3123999:+ chr19:3110149:+ chr19:3094360-3123997:+ chr19:3110147:+ chr19:3193663,chr19:3193661 chr19:3105655,chr19:3105650 NA NA chr19:3193661,chr19:3193659 chr19:3105653,chr19:3105648 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Peptidase_M28|217-380|1.2e-15^Nicastrin|218-410|1.7e-12 G-alpha-PARTIAL|~137-348|4.9e-140^DUF2194-PARTIAL|~137-197|2.5e-06^Arf|178-281|1.5e-14^MMR_HSR1|186-274|0.0088^Roc|194-277|0.059^Gtr1_RagA|196-282|3.6e-05 ["GNA11:OncomapV4_panel","GNA11:ArcherDX_panel","GNA11:Oncogene","GNA11:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.06Mb];LOCAL_REARRANGEMENT:+:[61559] 202 130 202 124.19 ONLY_REF_SPLICE YES_LDAS 3.3102 GT 1.9329 AG 1.4566 ENST00000246117.9 1-520 ENST00000078429.9 137-1080 chr19|+|[0]3186031-3186214[0]|[1]3192470-3192660[2]|[0]3193284-3193428[0]<==>chr19|+|[1]3110149-3110333[2]|[0]3113330-3113484[1]|[2]3114944-3115072[1]|[2]3118924-3119053[2]|[0]3119206-3119359[0]|[1]3120989-3121179[2] atgctggaggaagcgggcgaggtgctggagaacatgctgaaggcgtcttgtctgccgctcggcttcatcgtcttcctgcccgctgtgctgctgctggtggcgccgccgctgcctgccgccgacgccgcgcacgagttcaccgtgtaccgcatgcagcagtacgacctgcagggccagccctacggcacacggaatgcagtgctgaacacggaggcgcgcacgatggcggcggaggtgctgagccgccgctgcgtgctcatgcggctactggacttctcctacgagcagtaccagaaggccctgcggcagtcggcgggcgccgtggtcatcatcctgcccagggccatggccgccgtgccccaggacgtcgtccggcaattcatggagatcgagccggagatgctggccatggagaccgccgtccccgtgtactttgccgtggaggacgaggccctgctgtctatctacaagcagacccaggctgcctccgcctcccagggctccgcctctgctgctgaagGCACGGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCATCATCCACGGCGCCGGCTACTCGGAGGAGGACAAGCGCGGCTTCACCAAGCTCGTCTACCAGAACATCTTCACCGCCATGCAGGCCATGATCCGGGCCATGGAGACGCTCAAGATCCTCTACAAGTACGAGCAGAACAAGGCCAATGCGCTCCTGATCCGGGAGGTGGACGTGGAGAAGGTGACCACCTTCGAGCATCAGTACGTCAGTGCCATCAAGACCCTGTGGGAGGACCCGGGCATCCAGGAATGCTACGACCGCAGGCGCGAGTACCAGCTCTCCGACTCTGCCAAGTACTACCTGACCGACGTTGACCGCATCGCCACCTTGGGCTACCTGCCCACCCAGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCATCATCGAGTACCCTTTCGACCTGGAGAACATCATCTTCCGGATGGTGGATGTGGGGGGCCAGCGGTCGGAGCGGAGGAAGTGGATCCACTGCTTTGAGAACGTGACATCCATCATGTTTCTCGTCGCCCTCAGCGAATACGACCAAGTCCTGGTGGAGTCGGACAACGAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCATCATCACCTACCCCTGGTTCCAGAACTCCTCCGTCATCCTCTTCCTCAACAAGAAGGACCTGCTGGAGGACAAGATCCTGTACTCGCACCTGGTGGACTACTTCCCCGAGTTCGATGGTCCCCAGCGGGACGCCCAGGCGGCGCGGGAGTTCATCCTGAAGATGTTCGTGGACCTGAACCCCGACAGCGACAAGATCATCTACTCACACTTCACGTGTGCCACCGACACGGAGAACATCCGCTTCGTGTTCGCGGCCGTGAAGGACACCATCCTGCAGCTCAACCTCAAGGAGTACAACCTGGTCTGA MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTRNAVLNTEARTMAAEVLSRRCVLMRLLDFSYEQYQKALRQSAGAVVIILPRAMAAVPQDVVRQFMEIEPEMLAMETAVPVYFAVEDEALLSIYKQTQAASASQGSASAAEGTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANALLIREVDVEKVTTFEHQYVSAIKTLWEDPGIQECYDRRREYQLSDSAKYYLTDVDRIATLGYLPTQQDVLRVRVPTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEDKILYSHLVDYFPEFDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1 Yes uveal melanoma, primary central nervous system melanocytic neoplasms epithelial, other oncogene missense 32920 EIF4H::ELN ENSG00000106682.16::ENSG00000049540.19 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2151 TRUE 3953 TRUE 1490 EIF4H ENSG00000106682.16 protein_coding + + chr7:74174231-74197122:+ chr7:74174442:+ chr7:73588561-73611452:+ chr7:73588772:+ ELN ENSG00000049540.19 protein_coding + + chr7:74027789-74069907:+ chr7:74061101:+ chr7:73442119-73484237:+ chr7:73475431:+ chr7:74175727,chr7:74175727 chr7:74060981,chr7:74060978 NA NA chr7:73590057,chr7:73590057 chr7:73475311,chr7:73475308 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_1-PARTIAL|45-59~|3.8e-17 none ["ELN:Oncogene"];["TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.10Mb] 197 1 197 0.32 ONLY_REF_SPLICE YES_LDAS 2.0024 GT 1.3383 AG 1.9086 ENST00000677998.1 1-59 ENST00000458204.5 1718-2145 chr7|+|[0]74174384-74174442[1]<==>chr7|+|[1]74061101-74061139[0]|[1]74063153-74063224[0]|[1]74063310-74063369[0]|[1]74063621-74063695[0]|[1]74065694-74065732[0]|[1]74065944-74065997[0]|[1]74066732-74066776[0]|[1]74068657-74068700[2] atggcggacttcgacacctacgacgatcgggcctacagcagcttcggcggcggcagaggTACCTGGAGCCCTGGCTGCCGCTAAAGCAGCCAAATATGGAGCAGCAGTGCCTGGGGTCCTTGGAGGGCTCGGGGCTCTCGGTGGAGTAGGCATCCCAGGCGGTGTGGTGGGAGCCGGACCCGCCGCCGCCGCTGCCGCAGCCAAAGCTGCTGCCAAAGCCGCCCAGTTTGGCCTAGTGGGAGCCGCTGGGCTCGGAGGACTCGGAGTCGGAGGGCTTGGAGTTCCAGGTGTTGGGGGCCTTGGAGGTATACCTCCAGCTGCAGCCGCTAAAGCAGCTAAATACGGTGCTGCTGGCCTTGGAGGTGTCCTAGGGGGTGCCGGGCAGTTCCCACTTGGAGGAGTGGCAGCAAGACCTGGCTTCGGATTGTCTCCCATTTTCCCAGGTGGGGCCTGCCTGGGGAAAGCTTGTGGCCGGAAGAGAAAATGA MADFDTYDDRAYSSFGGGRGTWSPGCR*SSQIWSSSAWGPWRARGSRWSRHPRRCGGSRTRRRRCRSQSCCQSRPVWPSGSRWARRTRSRRAWSSRCWGPWRYTSSCSR*SS*IRCCWPWRCPRGCRAVPTWRSGSKTWLRIVSHFPRWGLPGESLWPEEKM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma LUNG no_match 73604636|73604248|73604248 FALSE|FALSE|FALSE 73449694|73449694|73461026 FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE elastin 2 B-ALL leukaemia_lymphoma fusion translocation 32922 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29461734:+ chr12:29542222-29640421:+ chr12:29614667:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.81Mb] 112 132 112 121.03 ONLY_REF_SPLICE YES_LDAS 2.3648 GT 1.5546 AG 1.5656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32924 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190370893:+ chr3:190040330-190129927:+ chr3:190088682:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr3] 65 79 65 59.96 ONLY_REF_SPLICE YES_LDAS 1.2681 GT 1.9899 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32925 RFTN1::DAZL ENSG00000131378.14::ENSG00000092345.14 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2155 FALSE NA FALSE NA RFTN1 ENSG00000131378.14 protein_coding - - chr3:16313574-16514026:- chr3:16493725:- chr3:16355081-16555533:- chr3:16535232:- DAZL ENSG00000092345.14 protein_coding - - chr3:16586792-16670306:- chr3:16592148:- chr3:16628299-16711813:- chr3:16633655:- chr3:16436787 chr3:16593243 NA NA chr3:16478294 chr3:16634750 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Raftlin|1-113|1e-71 none ["Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","GUO2018CR_TCGA","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[72766] 61 14 61 14 ONLY_REF_SPLICE YES_LDAS 0.7611 GT 1.9329 AG 1.9656 ENST00000453536.5 1-145 ENST00000250863.12 796-948 chr3|-|[0]16493725-16493869[0]<==>chr3|-|[2]16588660-16588713[0]|[2]16592050-16592148[0] atgggttgcggattgaacaagttagagaaacgtgatgaaaaacggcctgggaatatttattcaactttgaagaggcctcaggtggaaaccaagatagatgtgtcctatgaataccgcttcctggagttcacgactctgagtgctgAAATCTGTGGACCGAAGCATACAAACGGTGGTATCTTGTCTGTTTAATCCAGAGAACAGACTGAGAAACTCTGTTGTTACTCAAGATGACTACTTCAAGGATAAAAGAGTGCATCACTTTAGAAGAAGTCGGGCAATGCTTAAATCTGTTTGA MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAEICGPKHTNGGILSV*SREQTEKLCCYSR*LLQG*KSASL*KKSGNA*ICL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Breast no_match TRUE Lung adenocarcinoma,Breast invasive carcinoma,Breast invasive carcinoma LUNG,BREAST,BREAST no_match 16450882,16399439,16450882 FALSE,FALSE,FALSE 16640105,16640105,16636090 FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,YES In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32926 NCLN::GNA11 ENSG00000125912.11::ENSG00000088256.9 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2153 TRUE 3954 TRUE 1491 NCLN ENSG00000125912.11 protein_coding + + chr19:3185563-3209575:+ chr19:3186214:+ chr19:3185561-3209573:+ chr19:3186212:+ GNA11 ENSG00000088256.9 protein_coding + + chr19:3094362-3123999:+ chr19:3110149:+ chr19:3094360-3123997:+ chr19:3110147:+ chr19:3193663,chr19:3193661 chr19:3105655,chr19:3105650 NA NA chr19:3193661,chr19:3193659 chr19:3105653,chr19:3105648 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none G-alpha-PARTIAL|~137-348|4.9e-140^DUF2194-PARTIAL|~137-197|2.5e-06^Arf|178-281|1.5e-14^MMR_HSR1|186-274|0.0088^Roc|194-277|0.059^Gtr1_RagA|196-282|3.6e-05 ["GNA11:OncomapV4_panel","GNA11:ArcherDX_panel","GNA11:Oncogene","GNA11:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.06Mb];LOCAL_REARRANGEMENT:+:[61559] 57 36 57 5.81 ONLY_REF_SPLICE YES_LDAS 0.6374 GT 1.7819 AG 1.4566 ENST00000246117.9 1-184 ENST00000078429.9 137-1080 chr19|+|[0]3186031-3186214[0]<==>chr19|+|[1]3110149-3110333[2]|[0]3113330-3113484[1]|[2]3114944-3115072[1]|[2]3118924-3119053[2]|[0]3119206-3119359[0]|[1]3120989-3121179[2] atgctggaggaagcgggcgaggtgctggagaacatgctgaaggcgtcttgtctgccgctcggcttcatcgtcttcctgcccgctgtgctgctgctggtggcgccgccgctgcctgccgccgacgccgcgcacgagttcaccgtgtaccgcatgcagcagtacgacctgcagggccagccctacgGCACGGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCATCATCCACGGCGCCGGCTACTCGGAGGAGGACAAGCGCGGCTTCACCAAGCTCGTCTACCAGAACATCTTCACCGCCATGCAGGCCATGATCCGGGCCATGGAGACGCTCAAGATCCTCTACAAGTACGAGCAGAACAAGGCCAATGCGCTCCTGATCCGGGAGGTGGACGTGGAGAAGGTGACCACCTTCGAGCATCAGTACGTCAGTGCCATCAAGACCCTGTGGGAGGACCCGGGCATCCAGGAATGCTACGACCGCAGGCGCGAGTACCAGCTCTCCGACTCTGCCAAGTACTACCTGACCGACGTTGACCGCATCGCCACCTTGGGCTACCTGCCCACCCAGCAGGACGTGCTGCGGGTCCGCGTGCCCACCACCGGCATCATCGAGTACCCTTTCGACCTGGAGAACATCATCTTCCGGATGGTGGATGTGGGGGGCCAGCGGTCGGAGCGGAGGAAGTGGATCCACTGCTTTGAGAACGTGACATCCATCATGTTTCTCGTCGCCCTCAGCGAATACGACCAAGTCCTGGTGGAGTCGGACAACGAGAACCGGATGGAGGAGAGCAAAGCCCTGTTCCGGACCATCATCACCTACCCCTGGTTCCAGAACTCCTCCGTCATCCTCTTCCTCAACAAGAAGGACCTGCTGGAGGACAAGATCCTGTACTCGCACCTGGTGGACTACTTCCCCGAGTTCGATGGTCCCCAGCGGGACGCCCAGGCGGCGCGGGAGTTCATCCTGAAGATGTTCGTGGACCTGAACCCCGACAGCGACAAGATCATCTACTCACACTTCACGTGTGCCACCGACACGGAGAACATCCGCTTCGTGTTCGCGGCCGTGAAGGACACCATCCTGCAGCTCAACCTCAAGGAGTACAACCTGGTCTGA MLEEAGEVLENMLKASCLPLGFIVFLPAVLLLVAPPLPAADAAHEFTVYRMQQYDLQGQPYGTGESGKSTFIKQMRIIHGAGYSEEDKRGFTKLVYQNIFTAMQAMIRAMETLKILYKYEQNKANALLIREVDVEKVTTFEHQYVSAIKTLWEDPGIQECYDRRREYQLSDSAKYYLTDVDRIATLGYLPTQQDVLRVRVPTTGIIEYPFDLENIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEDKILYSHLVDYFPEFDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE guanine nucleotide binding protein (G protein), alpha 11 (Gq class) 1 Yes uveal melanoma, primary central nervous system melanocytic neoplasms epithelial, other oncogene missense 32927 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29486886:+ chr12:29542222-29640421:+ chr12:29639819:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.81Mb] 42 23 42 3.5 ONLY_REF_SPLICE YES_LDAS 0.4617 GT 1.5546 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32928 BCAT1::TSPAN11 ENSG00000060982.15::ENSG00000110900.16 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BCAT1 ENSG00000060982.15 protein_coding - - chr12:24810024-24949101:- chr12:24842082:- chr12:24962958-25102035:- chr12:24995016:- TSPAN11 ENSG00000110900.16 protein_coding + + chr12:30926428-30996602:+ chr12:30953981:+ chr12:31079362-31149537:+ chr12:31106915:+ chr12:24839672,chr12:24839676 chr12:30951115,chr12:30951111 NA NA chr12:24992606,chr12:24992610 chr12:31104049,chr12:31104045 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:5.98Mb] 35 17 35 17 ONLY_REF_SPLICE YES_LDAS 0.5277 GT 1.5058 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32929 ENSG00000246331::PKP2 ENSG00000246331.2::ENSG00000057294.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2156 FALSE NA FALSE NA ENSG00000246331 ENSG00000246331.2 lncRNA + + chr12:30755074-30780739:+ chr12:30755271:+ chr12:30908008-30933673:+ chr12:30908205:+ PKP2 ENSG00000057294.18 protein_coding - - chr12:32790745-32896798:- chr12:32850973:- chr12:32943679-33049732:- chr12:33003907:- chr12:30762005,chr12:30762006,chr12:30761980 chr12:32866902,chr12:32866904,chr12:32866787 NA NA chr12:30914939,chr12:30914940,chr12:30914914 chr12:33019836,chr12:33019838,chr12:33019721 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 30 28 30 28 ONLY_REF_SPLICE YES_LDAS 0.5885 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32931 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2157 TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120407823:+ chr11:120207122-120360646:+ chr11:120278532:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120246449:+ chr11:120107349-120190654:+ chr11:120117158:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PDZ-PARTIAL|75-142~|1.4e-15^PDZ_2-PARTIAL|89-142~|3.7e-09^PDZ_6-PARTIAL|93-142~|1.3e-13^Tricorn_PDZ-PARTIAL|100-142~|0.00019 HTH_3-PARTIAL|~29-31|1.6^Pou|187-257|2.7e-41^HTH_3|199-234|0.00027^Homeodomain|282-338|8.8e-23^Homeobox_KN|301-334|1.3e-06^HTH_3|305-318|4.6^DUF4424|308-351|5.4e-05 ["ARHGEF12:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.02Mb];LOCAL_REARRANGEMENT:+:[16970] 24 16 24 12.39 ONLY_REF_SPLICE YES_LDAS 0.3693 GT 1.9329 AG 1.8062 ENST00000397843.7 1-142 ENST00000543440.7 29-1311 chr11|+|[0]120337244-120337275[1]|[2]120406118-120406141[1]|[2]120407738-120407823[0]<==>chr11|+|[1]120246449-120246517[0]|[1]120269210-120269244[2]|[0]120298265-120298390[2]|[0]120299624-120299726[0]|[1]120302286-120302368[2]|[0]120305030-120305212[2]|[0]120305644-120305785[0]|[1]120307479-120307615[2]|[0]120309425-120309586[2]|[0]120315361-120315427[0]|[1]120317229-120317364[1]|[2]120318353-120318392[2] atgagtggcacacagtctactatcaccgacaggtttcccctcaaaaaacctataaggcatggaagtattttgaaccgagagtcaccaacagataagaagcagaaagttgagcgcattgcatcacatgattttgaccccacagATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTCGCAGCACTCTCAGCCAGGTGGAGCCAGGAAATGATCGAAATGGCCTAGATTTCAACAGGCAGATTAAAACCGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCTGAGTCAAGGACCTGCCATGATGTCCGGAAACCAAATGTCTGGGCTAAATGCCAGCCCATGTCAGGACATGGCTTCCCTCCATCCGCTCCAGCAGCTTGTGCTGGTTCCCGGCCACTTACAGTCTGTATCCCAGTTCCTGCTATCTCAGACCCAGCCTGGGCAGCAAGGTCTGCAGCCAAATCTCCTCCCCTTTCCACAGCAACAAAGCGGTCTCCTCCTCCCACAGACTGGGCCGGGACTGGCATCCCAGGCATTTGGGCACCCTGGGCTGCCAGGATCCTCTTTAGAACCCCACCTGGAAGCATCCCAGCATCTCCCAGTGCCCAAGCATCTACCCAGCTCTGGAGGGGCCGATGAGCCCAGTGACCTCGAGGAGCTGGAGAAGTTTGCCAAGACCTTCAAGCAGAGGCGCATTAAGCTGGGCTTCACACAGGGAGATGTGGGGCTGGCGATGGGAAAGCTGTATGGCAACGACTTCAGCCAGACCACCATCTCACGATTTGAGGCCCTCAACCTGAGCTTCAAGAACATGTGCAAGCTCAAGCCCCTGCTGGAGAAGTGGCTGAATGATGCAGAGTCCTCTCCGTCAGACCCCTCAGTGAGCACGCCCAGCTCCTACCCCAGCCTCAGTGAAGTATTTGGTAGGAAGAGAAAGAAACGGACCAGCATCGAGACCAACATCCGCCTGACTCTGGAGAAGAGGTTTCAAGATAACCCAAAACCCAGCTCGGAGGAGATCTCCATGATTGCAGAGCAGTTGTCCATGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAACCGACGCCAAAAGGAGAAGCGAATCAACTGCCCTGTGGCCACACCCATCAAACCACCTGTCTACAACTCCCGGCTGGTATCTCCCTCAGGGTCTCTGGGCCCCCTCTCTGTCCCTCCTGTCCACAGTACCATGCCTGGAACAGTAACGTCATCCTGTTCCCCTGGGAACAACAGCAGGCCTTCATCTCCTGGCTCAGGACTCCACGCCAGCAGCCCCACTGCATCTCAAAATAACTCCAAAGCAGCAGTGAACTCCGCCTCCAGTTTTAACTCTTCAGGATCTTGGTACCGATGGAATCATTCCACCTACCTCCACTGA MSGTQSTITDRFPLKKPIRHGSILNRESPTDKKQKVERIASHDFDPTDIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQSGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRWNHSTYLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32934 FN3KRP::FOXK2 ENSG00000141560.15::ENSG00000141568.21 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2159 TRUE 3960 TRUE 1495 FN3KRP ENSG00000141560.15 protein_coding + + chr17:82716706-82730328:+ chr17:82719057:+ chr17:80674582-80688204:+ chr17:80676933:+ FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82601303:+ chr17:80477589-80602538:+ chr17:80559179:+ chr17:82720264,chr17:82720263 chr17:82592978,chr17:82592974 NA NA chr17:80678140,chr17:80678139 chr17:80550854,chr17:80550850 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Fructosamin_kin|13-116|9.2e-23^RIO1|29-98|3.9e-07^APH|33-111|1.8e-08 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.07Mb];LOCAL_REARRANGEMENT:+:[72021] 20 20 20 15.87 ONLY_REF_SPLICE YES_LDAS 0.364 GT 1.8892 AG 1.7819 ENST00000574356.5 1-293 ENST00000335255.10 1787-1983 chr17|+|[0]82716756-82716896[2]|[0]82718906-82719057[1]<==>chr17|+|[1]82601303-82601499[2] atggaggagctcctgaggcgcgagctgggctgcagctctgtcagggccacgggccactcggggggcgggtgcatcagccagggccggagctacgacacggatcaaggacgagtgttcgtgaaagtgaaccccaaggcggaggccagaagaatgtttgaaggtgagatggcaagtttaactgccatcctgaaaacaaacacggtgaaagtgcccaagcccatcaaggttctggatgccccaggcggcgggagcgtgctggtgatggagcacatggacatgaggcatctgagcagCCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAGCCGTAAGGGAAAAGGGTGTCCAGAACTAG MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLTAILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSRGESFAHVGNTRIRIGLPAHKAPQR*PAGAAGAEADQDRRRRGHRHCPERGHATGSRKGKGCPEL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32935 ENSG00000251314::CAST ENSG00000251314.2::ENSG00000153113.24 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000251314 ENSG00000251314.2 lncRNA + + chr5:95962001-96631085:+ chr5:96379652:+ chr5:95297705-95966789:+ chr5:95715356:+ CAST ENSG00000153113.24 protein_coding + + chr5:96525267-96779595:+ chr5:96675539:+ chr5:95860971-96115299:+ chr5:96011243:+ chr5:96630835,chr5:96630833 chr5:96631662,chr5:96631657 NA NA chr5:95966539,chr5:95966537 chr5:95967366,chr5:95967361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CAST:Oncogene"] 18 3 18 3 ONLY_REF_SPLICE YES_LDAS 0.2131 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32937 PTP4A2::CLDN16 ENSG00000184007.22::ENSG00000113946.4 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2154 TRUE 3957 TRUE 1493 PTP4A2 ENSG00000184007.22 protein_coding - - chr1:31906421-31944856:- chr1:31915895:- chr1:32372022-32410457:- chr1:32381496:- CLDN16 ENSG00000113946.4 protein_coding + + chr3:190322541-190412138:+ chr3:190402337:+ chr3:190040330-190129927:+ chr3:190120126:+ chr1:31911809,chr1:31911812 chr3:190351665,chr3:190351662 NA NA chr1:32377410,chr1:32377413 chr3:190069454,chr3:190069451 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Y_phosphatase|25-107|7.5e-08^DSPc|33-107|6.9e-06 PMP22_Claudin-PARTIAL|~115-182|4.7e-18^Claudin_2-PARTIAL|~115-183|5.1e-10^aGPT-Pplase3-PARTIAL|~115-129|4.9e-05^DuoxA|120-190|4.1e-05^Clc-like|140-158|0.66 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr3] 15 25 15 2.47 ONLY_REF_SPLICE YES_LDAS 0.1773 GT 1.9899 AG 1.8892 ENST00000602683.5 1-189 ENST00000264734.3 115-708 chr1|-|[2]31915895-31915987[0]|[2]31918970-31919065[0]<==>chr3|+|[0]190402337-190402439[0]|[1]190404762-190404926[0]|[1]190408314-190408505[0]|[1]190409903-190410036[2] atgaaccgtccagcccctgtggagatctcctatgagaacatgcgttttctgataactcacaaccctaccaatgctactctcaacaagttcacagaggaacttaagaagtatggagtgacgactttggttcgagtttgtgatgctacatatgataaagctccagttgaaaaagaaggaatccacgttctaGTGAGCACAAAATGCCGAGGCCTCTGGTGGGAATGCGTCACAAATGCTTTTGATGGGATTCGCACCTGTGATGAGTACGATTCCATACTTGCGGAGCATCCCTTGAAGCTGGTGGTAACTCGAGCGTTGATGATTACTGCAGATATTCTAGCTGGGTTTGGATTTCTCACCCTGCTCCTTGGTCTTGACTGCGTGAAATTCCTCCCTGATGAGCCGTACATTAAAGTCCGCATCTGCTTTGTTGCTGGAGCCACGTTACTAATAGCAGGTACCCCAGGAATCATTGGCTCTGTGTGGTATGCTGTTGATGTGTATGTGGAACGTTCTACTTTGGTTTTGCACAATATATTTCTTGGTATCCAATATAAATTTGGTTGGTCCTGTTGGCTCGGAATGGCTGGGTCTCTGGGTTGCTTTTTGGCTGGAGCTGTTCTCACCTGCTGCTTATATCTTTTTAAAGATGTTGGACCTGAGAGAAACTATCCTTATTCCTTGAGGAAAGCCTATTCAGCCGCGGGTGTTTCCATGGCCAAGTCATACTCAGCCCCTCGCACAGAGACGGCCAAAATGTATGCTGTAGACACAAGGGTGTAA MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYAVDTRV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32940 CAMKK2::P2RX4 ENSG00000110931.19::ENSG00000135124.16 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2161 FALSE NA FALSE NA CAMKK2 ENSG00000110931.19 protein_coding - - chr12:121237675-121298308:- chr12:121268638:- chr12:121675478-121736111:- chr12:121706441:- P2RX4 ENSG00000135124.16 protein_coding + + chr12:121210065-121234106:+ chr12:121221913:+ chr12:121647868-121671909:+ chr12:121659716:+ chr12:121266226,chr12:121266277 chr12:121219466,chr12:121219615 NA NA chr12:121704029,chr12:121704080 chr12:121657269,chr12:121657418 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Seadorna_VP7|159-191|0.056^Pkinase|165-446|4e-68^PK_Tyr_Ser-Thr|166-199|0.0063^APH|226-301|0.015^PK_Tyr_Ser-Thr|231-440|1.6e-35^ABC1|265-338|6.4e-07^RIO1|265-333|2.7e-06^Kinase-like|286-434|4.9e-10^Pkinase_fungal|293-361|5.2e-08^Seadorna_VP7|298-331|0.0015^APH|308-326|0.0012 P2X_receptor-PARTIAL|~283-373|8.4e-177 ["CAMKK2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.00Mb];LOCAL_INVERSION:-:+:[3585] 15 7 15 7 ONLY_REF_SPLICE YES_LDAS 0.2232 GT 1.8892 AG 1.9086 ENST00000392473.2 1-625 ENST00000337233.9 283-1167 chr12|-|[0]121268638-121268689[0]|[2]121269528-121269581[0]|[2]121270898-121270945[0]|[2]121274056-121274526[0]<==>chr12|+|[0]121221913-121221984[2]|[0]121222094-121222166[0]|[1]121222947-121223043[1]|[2]121228533-121228613[1]|[2]121228725-121228866[2]|[0]121228963-121229099[1]|[2]121232414-121232507[2]|[0]121232611-121232676[2]|[0]121232997-121233092[2]|[0]121233523-121233549[2] atgtcatcatgtgtctctagccagcccagcagcaaccgggccgccccccaggatgagctggggggcaggggcagcagcagcagcgaaagccagaagccctgtgaggccctgcggggcctctcatccttgagcatccacctgggcatggagtccttcattgtggtcaccgagtgtgagccgggctgtgctgtggacctcggcttggcgcgggaccggcccctggaggccgatggccaagaggtcccccttgacacctccgggtcccaggcccggccccacctctccggtcgcaagctgtctctgcaagagcggtcccagggtgggctggcagccggtggcagcctggacatgaacggacgctgcatctgcccgtccctgccctactcacccgtcagctccccgcagtcctcgcctcggctgccccggcggccgacagtggagtctcaccacgtctccatcacgggtatgcaggactgtgtgcagctgaatcagtataccctgaaggatgaaattggaaagggctcctatggtgtcgtcaagttggcctacaatgaaaatgacaatacctactatgcaatgaaggtgctgtccaaaaagaagctgatccggcaggccggctttccacGAGGAAAACTCCCTCTTCGTCATGACCAACGTGATCCTCACCATGAACCAGACACAGGGCCTGTGCCCCGAGATTCCAGATGCGACCACTGTGTGTAAATCAGATGCCAGCTGTACTGCCGGCTCTGCCGGCACCCACAGCAACGGAGTCTCAACAGGCAGGTGCGTAGCTTTCAACGGGTCTGTCAAGACGTGTGAGGTGGCGGCCTGGTGCCCGGTGGAGGATGACACACACGTGCCACAACCTGCTTTTTTAAAGGCTGCAGAAAACTTCACTCTTTTGGTTAAGAACAACATCTGGTATCCCAAATTTAATTTCAGCAAGAGGAATATCCTTCCCAACATCACCACTACTTACCTCAAGTCGTGCATTTATGATGCTAAAACAGATCCCTTCTGCCCCATATTCCGTCTTGGCAAAATAGTGGAGAACGCAGGACACAGTTTCCAGGACATGGCCGTGGAGGGAGGCATCATGGGCATCCAGGTCAACTGGGACTGCAACCTGGACAGAGCCGCCTCCCTCTGCTTGCCCAGGTACTCCTTCCGCCGCCTCGATACACGGGACGTTGAGCACAACGTATCTCCTGGCTACAATTTCAGGTTTGCCAAGTACTACAGAGACCTGGCTGGCAACGAGCAGCGCACGCTCATCAAGGCCTATGGCATCCGCTTCGACATCATTGTGTTTGGGAAGGCAGGGAAATTTGACATCATCCCCACTATGATCAACATCGGCTCTGGCCTGGCACTGCTAGGCATGGCGACCGTGCTGTGTGACATCATAGTCCTCTACTGCATGAAGAAAAGACTCTACTATCGGGAGAAGAAATATAAATATGTGGAAGATTACGAGCAGGGTCTTGCTAGTGAGCTGGACCAGTGA MSSCVSSQPSSNRAAPQDELGGRGSSSSESQKPCEALRGLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRKLSLQERSQGGLAAGGSLDMNGRCICPSLPYSPVSSPQSSPRLPRRPTVESHHVSITGMQDCVQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRGKLPLRHDQRDPHHEPDTGPVPRDSRCDHCV*IRCQLYCRLCRHPQQRSLNRQVRSFQRVCQDV*GGGLVPGGG*HTRATTCFFKGCRKLHSFG*EQHLVSQI*FQQEEYPSQHHHYLPQVVHL*C*NRSLLPHIPSWQNSGERRTQFPGHGRGGRHHGHPGQLGLQPGQSRLPLLAQVLLPPPRYTGR*AQRISWLQFQVCQVLQRPGWQRAAHAHQGLWHPLRHHCVWEGREI*HHPHYDQHRLWPGTARHGDRAV*HHSPLLHEEKTLLSGEEI*ICGRLRAGSC**AGPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Calcium/calmodulin-dependent protein kinase kinase 2 Other CAMKK CAMKK-Meta Q96RR4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32942 FN3KRP::FOXK2 ENSG00000141560.15::ENSG00000141568.21 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2160 TRUE 3960 TRUE 1495 FN3KRP ENSG00000141560.15 protein_coding + + chr17:82716706-82730328:+ chr17:82716896:+ chr17:80674582-80688204:+ chr17:80674772:+ FOXK2 ENSG00000141568.21 protein_coding + + chr17:82519713-82644662:+ chr17:82601303:+ chr17:80477589-80602538:+ chr17:80559179:+ chr17:82720264,chr17:82720263 chr17:82592978,chr17:82592974 NA NA chr17:80678140,chr17:80678139 chr17:80550854,chr17:80550850 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Fructosamin_kin|13-116|9.2e-23^RIO1|29-98|3.9e-07^APH|33-111|1.8e-08 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.07Mb];LOCAL_REARRANGEMENT:+:[72021] 13 9 13 2.54 ONLY_REF_SPLICE YES_LDAS 0.1577 GT 1.585 AG 1.7819 ENST00000574356.5 1-141 ENST00000335255.10 1787-1983 chr17|+|[0]82716756-82716896[2]<==>chr17|+|[1]82601303-82601499[2] atggaggagctcctgaggcgcgagctgggctgcagctctgtcagggccacgggccactcggggggcgggtgcatcagccagggccggagctacgacacggatcaaggacgagtgttcgtgaaagtgaaccccaaggcggagCCGCGGCGAGTCCTTTGCACATGTTGGCAACACACGCATCCGCATCGGCCTCCCTGCCCACAAAGCGCCACAACGGTGACCAGCCGGAGCAGCCGGAGCTGAAGCGGATCAAGACAGAAGACGGCGAGGGCATCGTCATTGCCCTGAGCGTGGACACGCCACCGGCAGCCGTAAGGGAAAAGGGTGTCCAGAACTAG MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEPRRVLCTCWQHTHPHRPPCPQSATTVTSRSSRS*SGSRQKTARASSLP*AWTRHRQP*GKRVSRT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32943 CCDC91::OVCH1-AS1 ENSG00000123106.11::ENSG00000257599.5 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE FALSE NA TRUE 3955 TRUE 1492 CCDC91 ENSG00000123106.11 protein_coding + + chr12:28133249-28581511:+ chr12:28452654:+ chr12:28286182-28734444:+ chr12:28605587:+ OVCH1-AS1 ENSG00000257599.5 lncRNA + + chr12:29389289-29487488:+ chr12:29461796:+ chr12:29542222-29640421:+ chr12:29614729:+ chr12:28470497,chr12:28470495,chr12:28470422 chr12:29423611,chr12:29423606,chr12:29423504 NA NA chr12:28623430,chr12:28623428,chr12:28623355 chr12:29576544,chr12:29576539,chr12:29576437 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.81Mb] 13 96 13 7.47 INCL_NON_REF_SPLICE YES_LDAS 0.2077 GT 1.5546 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32944 KDM4D::AMOTL1 ENSG00000186280.7::ENSG00000166025.18 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2162 FALSE NA FALSE NA KDM4D ENSG00000186280.7 protein_coding + + chr11:94973709-94999519:+ chr11:94975748:+ chr11:94706873-94732683:+ chr11:94708912:+ AMOTL1 ENSG00000166025.18 protein_coding + + chr11:94706431-94876748:+ chr11:94850114:+ chr11:94439597-94609913:+ chr11:94583279:+ chr11:94983638,chr11:94983637 chr11:94841515,chr11:94841511 NA NA chr11:94716802,chr11:94716801 chr11:94574681,chr11:94574677 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.10Mb];LOCAL_REARRANGEMENT:+:[96928] 11 9 11 7.94 ONLY_REF_SPLICE YES_LDAS 0.1922 GT 1.9329 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32949 ARHGEF12::POU2F3 ENSG00000196914.9::ENSG00000137709.10 RKN SRR8616094 SRR8670761 SOFT_TISSUE leiomyosarcoma primary star-fusion TRUE TRUE TRUE 2158 TRUE 3959 TRUE 1494 ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120409450:+ chr11:120207122-120360646:+ chr11:120280159:+ POU2F3 ENSG00000137709.10 protein_coding + + chr11:120236640-120319945:+ chr11:120246449:+ chr11:120107349-120190654:+ chr11:120117158:+ chr11:120415285,chr11:120415286 chr11:120239995,chr11:120239993 NA NA chr11:120285994,chr11:120285995 chr11:120110704,chr11:120110702 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PDZ|75-145|1.4e-15^PDZ_2|89-144|3.7e-09^PDZ_6|93-145|1.3e-13^Tricorn_PDZ|100-146|0.00019 HTH_3-PARTIAL|~29-31|1.6^Pou|187-257|2.7e-41^HTH_3|199-234|0.00027^Homeodomain|282-338|8.8e-23^Homeobox_KN|301-334|1.3e-06^HTH_3|305-318|4.6^DUF4424|308-351|5.4e-05 ["ARHGEF12:Oncogene"];["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.02Mb];LOCAL_REARRANGEMENT:+:[16970] 7 16 7 3.61 ONLY_REF_SPLICE YES_LDAS 0.1076 GT 1.9329 AG 1.8062 ENST00000397843.7 1-199 ENST00000543440.7 29-1311 chr11|+|[0]120337244-120337275[1]|[2]120406118-120406141[1]|[2]120407738-120407823[0]|[1]120409394-120409450[0]<==>chr11|+|[1]120246449-120246517[0]|[1]120269210-120269244[2]|[0]120298265-120298390[2]|[0]120299624-120299726[0]|[1]120302286-120302368[2]|[0]120305030-120305212[2]|[0]120305644-120305785[0]|[1]120307479-120307615[2]|[0]120309425-120309586[2]|[0]120315361-120315427[0]|[1]120317229-120317364[1]|[2]120318353-120318392[2] atgagtggcacacagtctactatcaccgacaggtttcccctcaaaaaacctataaggcatggaagtattttgaaccgagagtcaccaacagataagaagcagaaagttgagcgcattgcatcacatgattttgaccccacagatagctcctccaagaagacaaagtctagttcagaggagagtagatccgagatatatgATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTCGCAGCACTCTCAGCCAGGTGGAGCCAGGAAATGATCGAAATGGCCTAGATTTCAACAGGCAGATTAAAACCGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCTGAGTCAAGGACCTGCCATGATGTCCGGAAACCAAATGTCTGGGCTAAATGCCAGCCCATGTCAGGACATGGCTTCCCTCCATCCGCTCCAGCAGCTTGTGCTGGTTCCCGGCCACTTACAGTCTGTATCCCAGTTCCTGCTATCTCAGACCCAGCCTGGGCAGCAAGGTCTGCAGCCAAATCTCCTCCCCTTTCCACAGCAACAAAGCGGTCTCCTCCTCCCACAGACTGGGCCGGGACTGGCATCCCAGGCATTTGGGCACCCTGGGCTGCCAGGATCCTCTTTAGAACCCCACCTGGAAGCATCCCAGCATCTCCCAGTGCCCAAGCATCTACCCAGCTCTGGAGGGGCCGATGAGCCCAGTGACCTCGAGGAGCTGGAGAAGTTTGCCAAGACCTTCAAGCAGAGGCGCATTAAGCTGGGCTTCACACAGGGAGATGTGGGGCTGGCGATGGGAAAGCTGTATGGCAACGACTTCAGCCAGACCACCATCTCACGATTTGAGGCCCTCAACCTGAGCTTCAAGAACATGTGCAAGCTCAAGCCCCTGCTGGAGAAGTGGCTGAATGATGCAGAGTCCTCTCCGTCAGACCCCTCAGTGAGCACGCCCAGCTCCTACCCCAGCCTCAGTGAAGTATTTGGTAGGAAGAGAAAGAAACGGACCAGCATCGAGACCAACATCCGCCTGACTCTGGAGAAGAGGTTTCAAGATAACCCAAAACCCAGCTCGGAGGAGATCTCCATGATTGCAGAGCAGTTGTCCATGGAGAAGGAGGTGGTGAGGGTCTGGTTCTGCAACCGACGCCAAAAGGAGAAGCGAATCAACTGCCCTGTGGCCACACCCATCAAACCACCTGTCTACAACTCCCGGCTGGTATCTCCCTCAGGGTCTCTGGGCCCCCTCTCTGTCCCTCCTGTCCACAGTACCATGCCTGGAACAGTAACGTCATCCTGTTCCCCTGGGAACAACAGCAGGCCTTCATCTCCTGGCTCAGGACTCCACGCCAGCAGCCCCACTGCATCTCAAAATAACTCCAAAGCAGCAGTGAACTCCGCCTCCAGTTTTAACTCTTCAGGATCTTGGTACCGATGGAATCATTCCACCTACCTCCACTGA MSGTQSTITDRFPLKKPIRHGSILNRESPTDKKQKVERIASHDFDPTDSSSKKTKSSSEESRSEIYDIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLSDSLQQTLSHRPCHLSQGPAMMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQSGLLLPQTGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPIKPPVYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSFNSSGSWYRWNHSTYLH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma,Stomach adenocarcinoma STOMACH,STOMACH no_match 120207984|120207984,120207984 FALSE|FALSE,FALSE 120139919|120168974,120186070 FALSE|FALSE,FALSE PARTIALLY,YES Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 32954 RRS1::SDC2 ENSG00000179041.4::ENSG00000169439.12 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2169 FALSE NA FALSE NA RRS1 ENSG00000179041.4 protein_coding + + chr8:66429014-66430733:+ chr8:66429536:+ chr8:67341249-67342968:+ chr8:67341771:+ SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96593480:+ chr8:97506041-97624018:+ chr8:97605708:+ chr8:66429686,chr8:66429686,chr8:66429684 chr8:96568540,chr8:96568542,chr8:96568535 NA NA chr8:67341921,chr8:67341921,chr8:67341919 chr8:97580768,chr8:97580770,chr8:97580763 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RRS1|32-193|3.3e-64^RRS1|251-304|0.019 Endomucin-PARTIAL|~61-188|3.4e-06^DUF3275-PARTIAL|~61-111|0.00019^DUF5305|87-175|0.00062^Glycophorin_A|111-175|2.5e-05^ATG22|112-175|5.7e-05^DUF2721|118-169|4e-05^Dsc3_C|120-168|8.3e-05^Syndecan|138-199|3e-33^Peptidase_M50|141-169|0.00014^MtrF|145-166|0.0013^Cadherin_C_2|149-176|0.00015 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:30.06Mb] 170 57 170 57 INCL_NON_REF_SPLICE YES_LDAS 2.5783 GT 1.7232 AG 1.7819 ENST00000320270.4 1-405 ENST00000302190.9 61-606 chr8|+|[0]66429132-66429536[2]<==>chr8|+|[0]96593480-96593591[0]|[1]96602395-96602528[2]|[0]96608335-96608470[0]|[1]96609385-96609548[2] atggagggccagagcgtggaggagctgctcgcaaaggcagagcaggacgaggcagagaagttgcaacgcatcacggtgcacaaggagctggagctgcagtttgacctgggcaacctgctggcgtcggaccggaaccccccgaccgggctgcggtgcgccggacccacgccggaggccgagctacaggccctggcgcgggacaacacgcaactgctcatcaaccagctgtggcagctgcccacggagcgcgtggaagaggcgatagtggcgcggctgccggagcccaccacacgcctgccgcgagagaagcctctgccccgaccgcggccacttacacgctggcagcagttcgcgcgcctcaagggcatccgtcccaagaagaagaccaacctggtgtgggacgagAGAGCAGAGCTGACATCTGATAAAGACATGTACCTTGACAACAGCTCCATTGAAGAAGCTTCAGGAGTGTATCCTATTGATGACGATGACTACGCTTCTGCGTCTGGCTCGGGAGCTGATGAGGATGTAGAGAGTCCAGAGCTGACAACATCTCGACCACTTCCAAAGATACTGTTGACTAGTGCTGCTCCAAAAGTGGAAACCACGACGCTGAATATACAGAACAAGATACCTGCTCAGACAAAGTCACCTGAAGAAACTGATAAAGAGAAAGTTCACCTCTCTGACTCAGAAAGGAAAATGGACCCAGCCGAAGAGGATACAAATGTGTATACTGAGAAACACTCAGACAGTCTGTTTAAACGGACAGAAGTCCTAGCAGCTGTCATTGCTGGTGGAGTTATTGGCTTTCTCTTTGCAATTTTTCTTATCCTGCTGTTGGTGTATCGCATGAGAAAGAAGGATGAAGGAAGCTATGACCTTGGAGAACGCAAACCATCCAGTGCTGCTTATCAGAAGGCACCTACTAAGGAGTTTTATGCGTAA MEGQSVEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALARDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRPKKKTNLVWDERAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32955 SDC2::LINC01299 ENSG00000169439.12::ENSG00000254081.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3975 TRUE 1499 SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96602528:+ chr8:97506041-97624018:+ chr8:97614756:+ LINC01299 ENSG00000254081.2 lncRNA - - chr8:65526738-65562781:- chr8:65534864:- chr8:66438973-66475016:- chr8:66447099:- chr8:96603398,chr8:96603395 chr8:65554451,chr8:65554446 NA NA chr8:97615626,chr8:97615623 chr8:66466686,chr8:66466681 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:30.93Mb] 138 45 138 44.35 ONLY_REF_SPLICE YES_LDAS 2.0711 GT 1.9086 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32958 PRKDC::HAS2-AS1 ENSG00000253729.9::ENSG00000248690.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PRKDC ENSG00000253729.9 protein_coding - - chr8:47773111-47960178:- chr8:47849154:- chr8:48685672-48872738:- chr8:48761715:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888825:+ chr8:122651533-123006424:+ chr8:122901064:+ chr8:47848796,chr8:47848796,chr8:47848800 chr8:121888089,chr8:121888093,chr8:121888085 NA NA chr8:48761357,chr8:48761357,chr8:48761361 chr8:122900328,chr8:122900332,chr8:122900324 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PRKDC:FoundationOne_panel","PRKDC:ArcherDX_panel"];INTRACHROMOSOMAL[chr8:73.68Mb] 81 32 81 32 ONLY_REF_SPLICE YES_LDAS 1.2835 GT 1.8892 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN DNA-dependent protein kinase catalytic subunit Atypical PIKK DNAPK P78527 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32960 MMP16::CNGB3 ENSG00000156103.16::ENSG00000170289.13 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2176 TRUE 3980 TRUE 1501 MMP16 ENSG00000156103.16 protein_coding - - chr8:88032011-88328025:- chr8:88327075:- chr8:89044239-89340254:- chr8:89339304:- CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86671098:- chr8:87566205-87755903:- chr8:87683326:- chr8:88317698,chr8:88317703 chr8:86722672,chr8:86722674 NA NA chr8:89329927,chr8:89329932 chr8:87734900,chr8:87734902 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PG_binding_1|17-23|1.4^PG_binding_1|60-113|4.8e-13^DUF4256|74-117|1.1e-05^PG_binding_1|162-168|1.3 Ion_trans-PARTIAL|~339-451|1.7e-26^cNMP_binding|545-629|3.8e-20^CCD97-like_C|673-749|6e-05^DDHD|676-746|5.5e-05 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:1.29Mb] 66 25 66 15.42 ONLY_REF_SPLICE YES_LDAS 0.9247 GT 1.8062 AG 0.9968 ENST00000522726.1 1-183 ENST00000320005.6 339-2430 chr8|-|[2]88327075-88327186[2]|[1]88327910-88327980[0]<==>chr8|-|[2]86575804-86576130[0]|[2]86578689-86578863[2]|[1]86579106-86579252[2]|[1]86604093-86604211[0]|[2]86611588-86611671[0]|[2]86625983-86626080[1]|[0]86628919-86629078[0]|[2]86632752-86632893[2]|[1]86643751-86643873[2]|[1]86644622-86644686[0]|[2]86647801-86647887[0]|[2]86654012-86654062[0]|[2]86666925-86667133[1]|[0]86668019-86668168[1]|[0]86670944-86671098[2] atgcgggatgggagatactgtcgaagagctgtgctcaaaccagggcccttgtcgcgggctggatacctccgcactggaagacggttggatttcgtgcatcattcgggggtgtttttcttgcaaaccttgctttggattttatgtgctacagtctgcggaacggagcagtatttcaatgtggagCCCACAAAACAAACCGCCTGCAGCTCCTGTTATAAATGAGTATGCCGATGCCCAGCTACACAACCTGGTGAAAAGAATGCGTCAAAGAACAGCCCTCTACAAGAAAAAGTTGGTAGAGGGAGATCTCTCCTCACCCGAAGCCAGCCCACAAACTGCAAAGCCCACGGCTGTACCACCAGTAAAAGAAAGCGATGATAAGCCAACAGAACATTACTACAGGCTGTTGTGGTTCAAAGTCAAAAAGATGCCTTTAACAGAGTACTTAAAGCGAATTAAACTTCCAAACAGCATAGATTCATACACAGATCGACTCTATCTCCTGTGGCTCTTGCTTGTCACTCTTGCCTATAACTGGAACTGCTGTTTTATACCACTGCGCCTCGTCTTCCCATATCAAACCGCAGACAACATACACTACTGGCTTATTGCGGACATCATATGTGATATCATCTACCTTTATGATATGCTATTTATCCAGCCCAGACTCCAGTTTGTAAGAGGAGGAGACATAATAGTGGATTCAAATGAGCTAAGGAAACACTACAGGACTTCTACAAAATTTCAGTTGGATGTCGCATCAATAATACCATTTGATATTTGCTACCTCTTCTTTGGGTTTAATCCAATGTTTAGAGCAAATAGGATGTTAAAGTACACTTCATTTTTTGAATTTAATCATCACCTAGAGTCTATAATGGACAAAGCATATATCTACAGAGTTATTCGAACAACTGGATACTTGCTGTTTATTCTGCACATTAATGCCTGTGTTTATTACTGGGCTTCAAACTATGAAGGAATTGGCACTACTAGATGGGTGTATGATGGGGAAGGAAACGAGTATCTGAGATGTTATTATTGGGCAGTTCGAACTTTAATTACCATTGGTGGCCTTCCAGAACCACAAACTTTATTTGAAATTGTTTTTCAACTCTTGAATTTTTTTTCTGGAGTTTTTGTGTTCTCCAGTTTAATTGGTCAGATGAGAGATGTGATTGGAGCAGCTACAGCCAATCAGAACTACTTCCGCGCCTGCATGGATGACACCATTGCCTACATGAACAATTACTCCATTCCTAAACTTGTGCAAAAGCGAGTTCGGACTTGGTATGAATATACATGGGACTCTCAAAGAATGCTAGATGAGTCTGATTTGCTTAAGACCCTACCAACTACGGTCCAGTTAGCCCTCGCCATTGATGTGAACTTCAGCATCATCAGCAAAGTCGACTTGTTCAAGGGTTGTGATACACAGATGATTTATGACATGTTGCTAAGATTGAAATCCGTTCTCTATTTGCCTGGTGACTTTGTCTGCAAAAAGGGAGAAATTGGCAAGGAAATGTATATCATCAAGCATGGAGAAGTCCAAGTTCTTGGAGGCCCTGATGGTACTAAAGTTCTGGTTACTCTGAAAGCTGGGTCGGTGTTTGGAGAAATCAGCCTTCTAGCAGCAGGAGGAGGAAACCGTCGAACTGCCAATGTGGTGGCCCACGGGTTTGCCAATCTTTTAACTCTAGACAAAAAGACCCTCCAAGAAATTCTAGTGCATTATCCAGATTCTGAAAGGATCCTCATGAAGAAAGCCAGAGTGCTTTTAAAGCAGAAGGCTAAGACCGCAGAAGCAACCCCTCCAAGAAAAGATCTTGCCCTCCTCTTCCCACCGAAAGAAGAGACACCCAAACTGTTTAAAACTCTCCTAGGAGGCACAGGAAAAGCAAGTCTTGCAAGACTACTCAAATTGAAGCGAGAGCAAGCAGCTCAGAAGAAAGAAAATTCTGAAGGAGGAGAGGAAGAAGGAAAAGAAAATGAAGATAAACAAAAAGAAAATGAAGATAAACAAAAAGAAAATGAAGATAAAGGAAAAGAAAATGAAGATAAAGATAAAGGAAGAGAGCCAGAAGAGAAGCCACTGGACAGACCTGAATGTACAGCAAGTCCTATTGCAGTGGAGGAAGAACCCCACTCAGTTAGAAGGACAGTTTTACCCAGAGGGACTTCTCGTCAATCACTCATTATCAGCATGGCTCCTTCTGCTGAGGGCGGAGAAGAGGTTCTTACTATTGAAGTCAAAGAAAAGGCTAAGCAATAA MRDGRYCRRAVLKPGPLSRAGYLRTGRRLDFVHHSGVFFLQTLLWILCATVCGTEQYFNVEPTKQTACSSCYK*VCRCPATQPGEKNASKNSPLQEKVGRGRSLLTRSQPTNCKAHGCTTSKRKR**ANRTLLQAVVVQSQKDAFNRVLKAN*TSKQHRFIHRSTLSPVALACHSCL*LELLFYTTAPRLPISNRRQHTLLAYCGHHM*YHLPL*YAIYPAQTPVCKRRRHNSGFK*AKETLQDFYKISVGCRINNTI*YLLPLLWV*SNV*SK*DVKVHFIF*I*SSPRVYNGQSIYLQSYSNNWILAVYSAH*CLCLLLGFKL*RNWHY*MGV*WGRKRVSEMLLLGSSNFNYHWWPSRTTNFI*NCFSTLEFFFWSFCVLQFNWSDERCDWSSYSQSELLPRLHG*HHCLHEQLLHS*TCAKASSDLV*IYMGLSKNAR*V*FA*DPTNYGPVSPRH*CELQHHQQSRLVQGL*YTDDL*HVAKIEIRSLFAW*LCLQKGRNWQGNVYHQAWRSPSSWRP*WY*SSGYSESWVGVWRNQPSSSRRRKPSNCQCGGPRVCQSFNSRQKDPPRNSSALSRF*KDPHEESQSAFKAEG*DRRSNPSKKRSCPPLPTERRDTQTV*NSPRRHRKSKSCKTTQIEARASSSEERKF*RRRGRRKRK*R*TKRK*R*TKRK*R*RKRK*R*R*RKRARREATGQT*MYSKSYCSGGRTPLS*KDSFTQRDFSSITHYQHGSFC*GRRRGSYY*SQRKG*AI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32963 DNAJA1::CHST9 ENSG00000086061.16::ENSG00000154080.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2170 TRUE 3974 TRUE 1498 DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33037115:+ chr9:33025271-33039905:+ chr9:33037113:+ CHST9 ENSG00000154080.14 protein_coding - - chr18:26906481-27185308:- chr18:26944366:- chr18:24486445-24765272:- chr18:24524330:- chr9:33038090 chr18:26964968 NA NA chr9:33038088 chr18:24544932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DnaJ|6-65|7.3e-31^DnaJ_C|108-329|3.3e-43^HypA|130-160|0.00045^Anti-TRAP|132-158|0.00015^DnaJ_CXXCXGXG|134-200|4.6e-17^HypA|172-201|0.0024^Anti-TRAP|173-202|0.0011 Sulfotransfer_2|205-438|1.6e-74 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr18] 64 18 64 16.89 ONLY_REF_SPLICE YES_LDAS 0.9187 GT 1.8323 AG 1.5546 ENST00000330899.5 1-975 ENST00000581714.5 203-1332 chr9|+|[0]33026485-33026616[2]|[0]33026813-33026990[0]|[1]33029885-33029989[0]|[1]33030440-33030667[0]|[1]33034216-33034330[1]|[2]33036574-33036689[0]|[1]33037015-33037115[2]<==>chr18|-|[2]26916259-26917350[0]|[2]26944329-26944366[1] atggtgaaagaaacaacttactacgatgttttgggggtcaaacccaatgctactcaggaagaattgaaaaaggcttataggaaactggctttgaagtaccatcctgataagaacccaaatgaaggagagaagtttaaacagatttctcaagcttacgaagttctctctgatgcaaagaaaagggaattatatgacaaaggaggagaacaggcaattaaagagggtggagcaggtggcggttttggctcccccatggacatctttgatatgttttttggaggaggaggaaggatgcagagagaaaggagaggtaaaaatgttgtacatcagctctcagtaaccctagaagacttatataatggtgcaacaagaaaactggctctgcaaaagaatgtgatttgtgacaaatgtgaaggtagaggaggtaagaaaggagcagtagagtgctgtcccaattgccgaggtactggaatgcaaataagaattcatcagataggacctggaatggttcagcaaattcagtctgtgtgcatggagtgccagggccatggggagcggatcagtcctaaagatagatgtaaaagctgcaacggaaggaagatagttcgagagaagaaaattttagaagttcatattgacaaaggcatgaaagatggccagaagataacattccatggtgaaggagaccaagaaccaggactggagccaggcgatattatcattgtgttagatcagaaggaccatgctgtttttactcgacgaggagaagaccttttcatgtgtatggacatacagctcgttgaagcactgtgtggcttccagaagccaatatctactcttgacaaccgaaccatcgtcatcacctctcatccaggtcagattgtcaagcatggagatatcaagtgtgtactaaatgaaggcatgccaatttatcgtagaccatatgaaaagggtcgcctaatcatcgaatttaagTGAGTACAGAAAAAATCCAGGAACATATCACCAACCAGAACCCCAAGTTTCACATGCCTGAGGATGTACGAGAAAAAAAGGAAAATCTTCTACTCAATTCTGAGAGATCTACTAGGCTCTTAACAAAGACCAGTCATTCACAAGGAGGGGATCAAGCTTTAAGTAAGTCCACAGGGTCACCAACAGAGAAGTTGATTGAAAAACGTCAAGGAGCTAAGACTGTTTTTAACAAGTTCAGCAACATGAATTGGCCAGTGGACATTCACCCTTTAAACAAAAGTTTAGTCAAAGATAATAAATGGAAGAAAACTGAGGAGACCCAAGAGAAACGAAGGTCTTTCCTTCAGGAGTTTTGCAAGAAATACGGTGGGGTGAGTCATCATCAGTCACATCTTTTTCATACAGTATCCAGAATCTATGTAGAAGATAAACACAAAATCTTATATTGTGAGGTACCTAAGGCTGGCTGTTCCAATTGGAAAAGAATTCTGATGGTACTAAATGGATTGGCTTCCTCTGCATACAACATCTCCCACAATGCTGTCCACTACGGGAAGCATTTGAAGAAGCTAGATAGCTTTGACCTAAAAGGGATATATACCCGCTTAAATACTTACACCAAAGCTGTGTTTGTTCGTGATCCCATGGAAAGATTAGTATCAGCCTTTAGGGACAAATTTGAACACCCCAATAGTTATTACCATCCAGTATTCGGAAAGGCAATTATCAAGAAATATCGACCAAATGCCTGTGAAGAAGCATTAATTAATGGATCTGGAGTCAAGTTCAAAGAGTTTATCCACTACTTGCTGGATTCCCACCGTCCAGTAGGAATGGACATTCACTGGGAAAAGGTCAGCAAACTCTGCTATCCGTGTTTGATCAACTATGATTTTGTAGGGAAATTTGAGACTTTGGAAGAAGATGCCAATTACTTTTTACAGATGATCGGTGCTCCAAAGGAGCTGAAATTTCCCAACTTTAAGGATAGGCACTCTTCCGATGAAAGAACCAATGCTCAAGTCGTGAGACAGTATTTAAAGGATCTGACTAGAACTGAGAGACAATTAATCTATGACTTTTATTACTTGGACTATTTAATGTTTAATTATACAACTCCATTTTTGTAG MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFK*VQKKSRNISPTRTPSFTCLRMYEKKRKIFYSILRDLLGS*QRPVIHKEGIKL*VSPQGHQQRS*LKNVKELRLFLTSSAT*IGQWTFTL*TKV*SKIINGRKLRRPKRNEGLSFRSFARNTVG*VIISHIFFIQYPESM*KINTKSYIVRYLRLAVPIGKEF*WY*MDWLPLHTTSPTMLSTTGSI*RS*IALT*KGYIPA*ILTPKLCLFVIPWKD*YQPLGTNLNTPIVITIQYSERQLSRNIDQMPVKKH*LMDLESSSKSLSTTCWIPTVQ*EWTFTGKRSANSAIRV*STMIL*GNLRLWKKMPITFYR*SVLQRS*NFPTLRIGTLPMKEPMLKS*DSI*RI*LELRDN*SMTFITWTI*CLIIQLHFC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32965 APTX::DNAJA1 ENSG00000137074.20::ENSG00000086061.16 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2175 FALSE NA FALSE NA APTX ENSG00000137074.20 protein_coding - - chr9:32886601-33025130:- chr9:33024804:- chr9:32886599-33025128:- chr9:33024802:- DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33038685:+ chr9:33025271-33039905:+ chr9:33038683:+ chr9:33024375,chr9:33024378 chr9:33038231,chr9:33038228 NA NA chr9:33024373,chr9:33024376 chr9:33038229,chr9:33038226 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.00Mb];LOCAL_INVERSION:-:+:[43] 53 25 53 25 ONLY_REF_SPLICE YES_LDAS 0.8859 GT 1.9656 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32969 MMP16::CNGB3 ENSG00000156103.16::ENSG00000170289.13 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3980 TRUE 1501 MMP16 ENSG00000156103.16 protein_coding - - chr8:88032011-88328025:- chr8:88327075:- chr8:89044239-89340254:- chr8:89339304:- CNGB3 ENSG00000170289.13 protein_coding - - chr8:86553977-86743675:- chr8:86704402:- chr8:87566205-87755903:- chr8:87716630:- chr8:88317698,chr8:88317703 chr8:86722672,chr8:86722674 NA NA chr8:89329927,chr8:89329932 chr8:87734900,chr8:87734902 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:1.29Mb] 28 38 28 22.58 ONLY_REF_SPLICE YES_LDAS 0.5745 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32974 SDC2::LINC01299 ENSG00000169439.12::ENSG00000254081.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3975 TRUE 1499 SDC2 ENSG00000169439.12 protein_coding + + chr8:96493813-96611790:+ chr8:96602528:+ chr8:97506041-97624018:+ chr8:97614756:+ LINC01299 ENSG00000254081.2 lncRNA - - chr8:65526738-65562781:- chr8:65527585:- chr8:66438973-66475016:- chr8:66439820:- chr8:96603398,chr8:96603395 chr8:65554451,chr8:65554446 NA NA chr8:97615626,chr8:97615623 chr8:66466686,chr8:66466681 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:30.93Mb] 18 7 18 0.65 ONLY_REF_SPLICE YES_LDAS 0.2118 GT 1.9086 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32975 RIMS2::ENSG00000289405 ENSG00000176406.25::ENSG00000289405.2 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RIMS2 ENSG00000176406.25 protein_coding + + chr8:103500610-104254430:+ chr8:103697296:+ chr8:104512838-105266658:+ chr8:104709524:+ ENSG00000289405 ENSG00000289405.2 lncRNA - - chr8:134715820-134832014:- chr8:134717401:- chr8:135728063-135844257:- chr8:135729644:- chr8:103704235,chr8:103704234,chr8:103704236 chr8:134732283,chr8:134732284,chr8:134732282 NA NA chr8:104716463,chr8:104716462,chr8:104716464 chr8:135744526,chr8:135744527,chr8:135744525 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 7 17 7 ONLY_REF_SPLICE YES_LDAS 0.2726 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32977 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25252194:- chr2:25450724-25565459:- chr2:25475063:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24919184:- chr2:25042038-25143106:- chr2:25142053:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNMT3A:FoundationOne_panel","DNMT3A:Oncogene","DNMT3A:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.31Mb] 15 10 15 7.2 ONLY_REF_SPLICE YES_LDAS 0.2522 GT 1.9329 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 32978 HMBOX1::ENSG00000253642 ENSG00000147421.18::ENSG00000253642.6 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2183 FALSE NA FALSE NA HMBOX1 ENSG00000147421.18 protein_coding + + chr8:28890395-29064764:+ chr8:28890678:+ chr8:28747912-28922281:+ chr8:28748195:+ ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:33796294:+ chr8:33462374-33896622:+ chr8:33653812:+ chr8:28915565,chr8:28915566 chr8:33785509,chr8:33785506 NA NA chr8:28773082,chr8:28773083 chr8:33643027,chr8:33643024 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 1 14 1 ONLY_REF_SPLICE YES_LDAS 0.1704 GT 1.8892 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32980 EYA1::ENSG00000253853 ENSG00000104313.20::ENSG00000253853.3 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EYA1 ENSG00000104313.20 protein_coding - - chr8:71197433-71592025:- chr8:71244603:- chr8:72109668-72504260:- chr8:72156838:- ENSG00000253853 ENSG00000253853.3 lncRNA + + chr8:2726956-2838823:+ chr8:2804586:+ chr8:2584496-2696345:+ chr8:2662104:+ chr8:71244492,chr8:71244497 chr8:2800781,chr8:2800776 NA NA chr8:72156727,chr8:72156732 chr8:2658299,chr8:2658294 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 13 2 13 2 ONLY_REF_SPLICE YES_LDAS 0.1704 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32982 LZTS1::LINC02055 ENSG00000061337.16::ENSG00000254101.8 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2180 FALSE NA FALSE NA LZTS1 ENSG00000061337.16 protein_coding - - chr8:20246165-20303963:- chr8:20303740:- chr8:20103676-20161474:- chr8:20161251:- LINC02055 ENSG00000254101.8 lncRNA + + chr8:135859369-137092183:+ chr8:136382779:+ chr8:136871612-138104426:+ chr8:137395022:+ chr8:20263657,chr8:20263662,chr8:20263664,chr8:20263662 chr8:136330540,chr8:136330535,chr8:136330535,chr8:136330536 NA NA chr8:20121168,chr8:20121173,chr8:20121175,chr8:20121173 chr8:137342783,chr8:137342778,chr8:137342778,chr8:137342779 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 5 12 3.33 ONLY_REF_SPLICE YES_LDAS 0.1741 GT 1.371 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32989 DNMT3A::ADCY3 ENSG00000119772.19::ENSG00000138031.15 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 3985 TRUE 1502 DNMT3A ENSG00000119772.19 protein_coding - - chr2:25227855-25342590:- chr2:25274941:- chr2:25450724-25565459:- chr2:25497810:- ADCY3 ENSG00000138031.15 protein_coding - - chr2:24819169-24920237:- chr2:24919184:- chr2:25042038-25143106:- chr2:25142053:- chr2:25251567,chr2:25251569 chr2:24919788,chr2:24919787 NA NA chr2:25474436,chr2:25474438 chr2:25142657,chr2:25142656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNMT3A:FoundationOne_panel","DNMT3A:Oncogene","DNMT3A:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.31Mb] 10 7 10 2.33 ONLY_REF_SPLICE YES_LDAS 0.1401 GT 1.6895 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1301 chr2:25328640-25328721:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE DNA (cytosine-5-)-methyltransferase 3 alpha 1 Yes AML leukaemia_lymphoma TSG missense, frameshift, nonsense, splice_site FALSE NA NA NA NA NA NA NA NA NA 32991 UBXN8::BMP1 ENSG00000104691.16::ENSG00000168487.20 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2179 FALSE NA FALSE NA UBXN8 ENSG00000104691.16 protein_coding + + chr8:30729131-30767006:+ chr8:30763347:+ chr8:30586648-30624522:+ chr8:30620863:+ BMP1 ENSG00000168487.20 protein_coding + + chr8:22165140-22212326:+ chr8:22179705:+ chr8:22022653-22069839:+ chr8:22037218:+ chr8:30765897,chr8:30765897,chr8:30765897 chr8:22177945,chr8:22177949,chr8:22177942 NA NA chr8:30623413,chr8:30623413,chr8:30623413 chr8:22035458,chr8:22035462,chr8:22035455 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EMC3_TMCO1|85-157|7.6e-06^UBX|227-305|2.5e-23 CUB-PARTIAL|~837-855|3.5e-41^CUB|860-973|1.8e-33^CUB_2|881-908|0.21 ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:8.52Mb] 10 7 10 6.47 ONLY_REF_SPLICE YES_LDAS 0.1871 GT 1.8892 AG 1.9329 ENST00000620074.5 1-765 ENST00000306385.10 837-2961 chr8|+|[0]30732296-30732370[2]|[0]30744328-30744460[0]|[1]30751396-30751518[0]|[1]30753035-30753105[2]|[0]30754665-30754787[2]|[0]30756765-30756887[2]|[0]30760888-30760929[2]|[0]30763273-30763347[2]<==>chr8|+|[2]22179705-22179829[0]|[1]22180368-22180483[2]|[0]22192049-22192151[0]|[1]22194058-22194174[0]|[1]22194445-22194590[2]|[0]22194724-22194919[0]|[1]22195462-22195587[0]|[1]22196680-22196840[2]|[0]22197240-22197420[0]|[1]22201803-22201928[0]|[1]22206854-22206981[2]|[0]22207303-22207516[0]|[1]22209445-22209695[2]|[0]22211594-22211728[2] atgctctactccggcacctggaggactgtgggtataaggtgtccaagaaaaaaagctcagatctgccaacagcaggaatgttgcatagaacgaccgcctcttcggctgcgtggcttcggagcagctttgactacaactcccagactgcatcgcccctgcccccccacttccggagctgacttcacttcgaggaaccttttccctccaggaatcaaggattttcttttgctttgtggccggattttgctactgcttgctcttcttactttaactatttctgtgactacctcatggcttaactcatttaaatctccccaagtttatctgaaggaagaagaagaaaagaatgagaaaagacaaaaacttgtgagaaaaaaacaacaagaagcacaaggagagaaggccagcagatacatagagaatgttttaaaacctcaccaggaaatgaaattgagaaaactggaggagcgcttttatcaaatgacgggtgaagcctggaaattaagcagtggtcacaaacttgggggtgatgaaggtacaagtcagacatcttttgaaacatcaaacagagaagcagcaaagagccagaacttgcctaaacctttaactgaatttccgtctcctgctgaacagcccacatgcaaggagattcctgatttacctgaagaaccttctcaaacagcagaagaagtagttactgttgctctccgatgtcccagtgggaatgtcctgaggagaaggtttttgaagtcctacagctcacagGGGCATCTTCCTGGATACCATTGTCCCCAAGTATGAGGTGAACGGGGTGAAACCTCCCATTGGCCAAAGGACACGGCTCAGCAAGGGGGACATTGCCCAAGCCCGCAAGCTTTACAAGTGCCCAGCCTGTGGAGAGACCCTGCAAGACAGCACAGGCAACTTCTCCTCCCCTGAATACCCCAATGGCTACTCTGCTCACATGCACTGCGTGTGGCGCATCTCTGTCACACCCGGGGAGAAGATCATCCTGAACTTCACGTCCCTGGACCTGTACCGCAGCCGCCTGTGCTGGTACGACTATGTGGAGGTCCGAGATGGCTTCTGGAGGAAGGCGCCCCTCCGAGGCCGCTTCTGCGGGTCCAAACTCCCTGAGCCTATCGTCTCCACTGACAGCCGCCTCTGGGTTGAATTCCGCAGCAGCAGCAATTGGGTTGGAAAGGGCTTCTTTGCAGTCTACGAAGCCATCTGCGGGGGTGATGTGAAAAAGGACTATGGCCACATTCAATCGCCCAACTACCCAGACGATTACCGGCCCAGCAAAGTCTGCATCTGGCGGATCCAGGTGTCTGAGGGCTTCCACGTGGGCCTCACATTCCAGTCCTTTGAGATTGAGCGCCACGACAGCTGTGCCTACGACTATCTGGAGGTGCGCGACGGGCACAGTGAGAGCAGCACCCTCATCGGGCGCTACTGTGGCTATGAGAAGCCTGATGACATCAAGAGCACGTCCAGCCGCCTCTGGCTCAAGTTCGTCTCTGACGGGTCCATTAACAAAGCGGGCTTTGCCGTCAACTTTTTCAAAGAGGTGGACGAGTGCTCTCGGCCCAACCGCGGGGGCTGTGAGCAGCGGTGCCTCAACACCCTGGGCAGCTACAAGTGCAGCTGTGACCCCGGGTACGAGCTGGCCCCAGACAAGCGCCGCTGTGAGGCTGCTTGTGGCGGATTCCTCACCAAGCTCAACGGCTCCATCACCAGCCCGGGCTGGCCCAAGGAGTACCCCCCCAACAAGAACTGCATCTGGCAGCTGGTGGCCCCCACCCAGTACCGCATCTCCCTGCAGTTTGACTTCTTTGAGACAGAGGGCAATGATGTGTGCAAGTACGACTTCGTGGAGGTGCGCAGTGGACTCACAGCTGACTCCAAGCTGCATGGCAAGTTCTGTGGTTCTGAGAAGCCCGAGGTCATCACCTCCCAGTACAACAACATGCGCGTGGAGTTCAAGTCCGACAACACCGTGTCCAAAAAGGGCTTCAAGGCCCACTTCTTCTCAGACAAGGACGAGTGCTCCAAGGATAACGGCGGCTGCCAGCAGGACTGCGTCAACACGTTCGGCAGTTATGAGTGCCAATGCCGCAGTGGCTTCGTCCTCCATGACAACAAGCACGACTGCAAAGAAGCCGGCTGTGACCACAAGGTGACATCCACCAGTGGTACCATCACCAGCCCCAACTGGCCTGACAAGTATCCCAGCAAGAAGGAGTGCACGTGGGCCATCTCCAGCACCCCCGGGCACCGGGTCAAGCTGACCTTCATGGAGATGGACATCGAGTCCCAGCCTGAGTGTGCCTACGACCACCTAGAGGTGTTCGACGGGCGAGACGCCAAGGCCCCCGTCCTCGGCCGCTTCTGTGGGAGCAAGAAGCCCGAGCCCGTCCTGGCCACAGGCAGCCGCATGTTCCTGCGCTTCTACTCAGATAACTCGGTCCAGCGAAAGGGCTTCCAGGCCTCCCACGCCACAGAGTGCGGGGGCCAGGTACGGGCAGACGTGAAGACCAAGGACCTTTACTCCCACGCCCAGTTTGGCGACAACAACTACCCTGGGGGTGTGGACTGTGAGTGGGTCATTGTGGCCGAGGAAGGCTACGGCGTGGAGCTCGTGTTCCAGACCTTTGAGGTGGAGGAGGAGACCGACTGCGGCTATGACTACATGGAGCTCTTCGACGGCTACGACAGCACAGCCCCCAGGCTGGGGCGCTACTGTGGCTCAGGGCCTCCTGAGGAGGTGTACTCGGCGGGAGATTCTGTCCTGGTGAAGTTCCACTCGGATGACACCATCACCAAAAAAGGTTTCCACCTGCGATACACCAGCACCAAGTTCCAGGACACACTCCACAGCAGGAAGTGA MLYSGTWRTVGIRCPRKKAQICQQQECCIERPPLRLRGFGAALTTTPRLHRPCPPTSGADFTSRNLFPPGIKDFLLLCGRILLLLALLTLTISVTTSWLNSFKSPQVYLKEEEEKNEKRQKLVRKKQQEAQGEKASRYIENVLKPHQEMKLRKLEERFYQMTGEAWKLSSGHKLGGDEGTSQTSFETSNREAAKSQNLPKPLTEFPSPAEQPTCKEIPDLPEEPSQTAEEVVTVALRCPSGNVLRRRFLKSYSSQGHLPGYHCPQV*GERGETSHWPKDTAQQGGHCPSPQALQVPSLWRDPARQHRQLLLP*IPQWLLCSHALRVAHLCHTRGEDHPELHVPGPVPQPPVLVRLCGGPRWLLEEGAPPRPLLRVQTP*AYRLH*QPPLG*IPQQQQLGWKGLLCSLRSHLRG*CEKGLWPHSIAQLPRRLPAQQSLHLADPGV*GLPRGPHIPVL*D*APRQLCLRLSGGARRAQ*EQHPHRALLWL*EA**HQEHVQPPLAQVRL*RVH*QSGLCRQLFQRGGRVLSAQPRGL*AAVPQHPGQLQVQL*PRVRAGPRQAPL*GCLWRIPHQAQRLHHQPGLAQGVPPQQELHLAAGGPHPVPHLPAV*LL*DRGQ*CVQVRLRGGAQWTHS*LQAAWQVLWF*EARGHHLPVQQHARGVQVRQHRVQKGLQGPLLLRQGRVLQG*RRLPAGLRQHVRQL*VPMPQWLRPP*QQARLQRSRL*PQGDIHQWYHHQPQLA*QVSQQEGVHVGHLQHPRAPGQADLHGDGHRVPA*VCLRPPRGVRRARRQGPRPRPLLWEQEARARPGHRQPHVPALLLR*LGPAKGLPGLPRHRVRGPGTGRREDQGPLLPRPVWRQQLPWGCGL*VGHCGRGRLRRGARVPDL*GGGGDRLRL*LHGALRRLRQHSPQAGALLWLRAS*GGVLGGRFCPGEVPLG*HHHQKRFPPAIHQHQVPGHTPQQEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 32996 DNAJA1::CHST9 ENSG00000086061.16::ENSG00000154080.14 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2171 TRUE 3974 TRUE 1498 DNAJA1 ENSG00000086061.16 protein_coding + + chr9:33025273-33039907:+ chr9:33037115:+ chr9:33025271-33039905:+ chr9:33037113:+ CHST9 ENSG00000154080.14 protein_coding - - chr18:26906481-27185308:- chr18:26917350:- chr18:24486445-24765272:- chr18:24497314:- chr9:33038090 chr18:26964968 NA NA chr9:33038088 chr18:24544932 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DnaJ|6-65|7.3e-31^DnaJ_C|108-329|3.3e-43^HypA|130-160|0.00045^Anti-TRAP|132-158|0.00015^DnaJ_CXXCXGXG|134-200|4.6e-17^HypA|172-201|0.0024^Anti-TRAP|173-202|0.0011 Sulfotransfer_2-PARTIAL|~241-438|1.6e-74 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr18] 8 11 8 1.11 ONLY_REF_SPLICE YES_LDAS 0.1035 GT 1.8323 AG 1.7819 ENST00000330899.5 1-975 ENST00000581714.5 241-1332 chr9|+|[0]33026485-33026616[2]|[0]33026813-33026990[0]|[1]33029885-33029989[0]|[1]33030440-33030667[0]|[1]33034216-33034330[1]|[2]33036574-33036689[0]|[1]33037015-33037115[2]<==>chr18|-|[2]26916259-26917350[0] atggtgaaagaaacaacttactacgatgttttgggggtcaaacccaatgctactcaggaagaattgaaaaaggcttataggaaactggctttgaagtaccatcctgataagaacccaaatgaaggagagaagtttaaacagatttctcaagcttacgaagttctctctgatgcaaagaaaagggaattatatgacaaaggaggagaacaggcaattaaagagggtggagcaggtggcggttttggctcccccatggacatctttgatatgttttttggaggaggaggaaggatgcagagagaaaggagaggtaaaaatgttgtacatcagctctcagtaaccctagaagacttatataatggtgcaacaagaaaactggctctgcaaaagaatgtgatttgtgacaaatgtgaaggtagaggaggtaagaaaggagcagtagagtgctgtcccaattgccgaggtactggaatgcaaataagaattcatcagataggacctggaatggttcagcaaattcagtctgtgtgcatggagtgccagggccatggggagcggatcagtcctaaagatagatgtaaaagctgcaacggaaggaagatagttcgagagaagaaaattttagaagttcatattgacaaaggcatgaaagatggccagaagataacattccatggtgaaggagaccaagaaccaggactggagccaggcgatattatcattgtgttagatcagaaggaccatgctgtttttactcgacgaggagaagaccttttcatgtgtatggacatacagctcgttgaagcactgtgtggcttccagaagccaatatctactcttgacaaccgaaccatcgtcatcacctctcatccaggtcagattgtcaagcatggagatatcaagtgtgtactaaatgaaggcatgccaatttatcgtagaccatatgaaaagggtcgcctaatcatcgaatttaagAACCCCAAGTTTCACATGCCTGAGGATGTACGAGAAAAAAAGGAAAATCTTCTACTCAATTCTGAGAGATCTACTAGGCTCTTAACAAAGACCAGTCATTCACAAGGAGGGGATCAAGCTTTAAGTAAGTCCACAGGGTCACCAACAGAGAAGTTGATTGAAAAACGTCAAGGAGCTAAGACTGTTTTTAACAAGTTCAGCAACATGAATTGGCCAGTGGACATTCACCCTTTAAACAAAAGTTTAGTCAAAGATAATAAATGGAAGAAAACTGAGGAGACCCAAGAGAAACGAAGGTCTTTCCTTCAGGAGTTTTGCAAGAAATACGGTGGGGTGAGTCATCATCAGTCACATCTTTTTCATACAGTATCCAGAATCTATGTAGAAGATAAACACAAAATCTTATATTGTGAGGTACCTAAGGCTGGCTGTTCCAATTGGAAAAGAATTCTGATGGTACTAAATGGATTGGCTTCCTCTGCATACAACATCTCCCACAATGCTGTCCACTACGGGAAGCATTTGAAGAAGCTAGATAGCTTTGACCTAAAAGGGATATATACCCGCTTAAATACTTACACCAAAGCTGTGTTTGTTCGTGATCCCATGGAAAGATTAGTATCAGCCTTTAGGGACAAATTTGAACACCCCAATAGTTATTACCATCCAGTATTCGGAAAGGCAATTATCAAGAAATATCGACCAAATGCCTGTGAAGAAGCATTAATTAATGGATCTGGAGTCAAGTTCAAAGAGTTTATCCACTACTTGCTGGATTCCCACCGTCCAGTAGGAATGGACATTCACTGGGAAAAGGTCAGCAAACTCTGCTATCCGTGTTTGATCAACTATGATTTTGTAGGGAAATTTGAGACTTTGGAAGAAGATGCCAATTACTTTTTACAGATGATCGGTGCTCCAAAGGAGCTGAAATTTCCCAACTTTAAGGATAGGCACTCTTCCGATGAAAGAACCAATGCTCAAGTCGTGAGACAGTATTTAAAGGATCTGACTAGAACTGAGAGACAATTAATCTATGACTTTTATTACTTGGACTATTTAATGTTTAATTATACAACTCCATTTTTGTAG MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKNPKFHMPEDVREKKENLLLNSERSTRLLTKTSHSQGGDQALSKSTGSPTEKLIEKRQGAKTVFNKFSNMNWPVDIHPLNKSLVKDNKWKKTEETQEKRRSFLQEFCKKYGGVSHHQSHLFHTVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLASSAYNISHNAVHYGKHLKKLDSFDLKGIYTRLNTYTKAVFVRDPMERLVSAFRDKFEHPNSYYHPVFGKAIIKKYRPNACEEALINGSGVKFKEFIHYLLDSHRPVGMDIHWEKVSKLCYPCLINYDFVGKFETLEEDANYFLQMIGAPKELKFPNFKDRHSSDERTNAQVVRQYLKDLTRTERQLIYDFYYLDYLMFNYTTPFL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33000 CDK8::FGF14 ENSG00000132964.13::ENSG00000102466.17 SCLC21H SRR8616096 SRR8670746 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2182 FALSE NA FALSE NA CDK8 ENSG00000132964.13 protein_coding + + chr13:26254104-26420982:+ chr13:26353880:+ chr13:26828241-26995119:+ chr13:26928017:+ FGF14 ENSG00000102466.17 protein_coding - - chr13:101710804-102402457:- chr13:101875296:- chr13:102363154-103054807:- chr13:102527646:- chr13:26372923 chr13:102028465 NA NA chr13:26947060 chr13:102680815 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|26-335|4e-64^PK_Tyr_Ser-Thr|26-242|1.5e-29^Kdo|62-171|4.2e-06 none ["CDK8:ArcherDX_panel","CDK8:FoundationOne_panel"];["FGF14:Oncogene","FGF14:ArcherDX_panel","FGF14:FoundationOne_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:75.31Mb] 7 7 7 7 ONLY_REF_SPLICE YES_LDAS 0.159 GT 1.9329 AG 1.8892 ENST00000381527.8 1-456 ENST00000376131.9 209-759 chr13|+|[0]26254642-26254769[1]|[2]26337567-26337642[2]|[0]26349072-26349182[2]|[0]26353740-26353880[2]<==>chr13|-|[2]101722831-101722967[1]|[0]101726612-101726810[0]|[2]101868725-101868828[1]|[0]101875186-101875296[1] atggactatgactttaaagtgaagctgagcagcgagcgggagcgggtcgaggacctgtttgaatacgagggctgcaaagttggccgaggcacttatggtcacgtctacaaagccaagaggaaagatgggaaggatgataaagactatgctttaaaacaaatagaaggaactgggatctctatgtcggcatgtagagaaatagcattacttcgagagcttaagcatccaaacgtcatttctcttcaaaaggtgtttctgtctcatgctgataggaaggtgtggcttctgtttgactatgctgaacatgacctctggcatataatcaagtttcacagagcttctaaagcaaacaagaagccagttcagttacctcggggaatggtgaagtcactattatatcagatcctagatggtattcactacctgcatgctaactgggtgttgcacagagatttgATCCCCAGCTCAAGGGTATAGTGACCAGGTTATATTGCAGGCAAGGCTACTACTTGCAAATGCACCCCGATGGAGCTCTCGATGGAACCAAGGATGACAGCACTAATTCTACACTCTTCAACCTCATACCAGTGGGACTACGTGTTGTTGCCATCCAGGGAGTGAAAACAGGGTTGTATATAGCCATGAATGGAGAAGGTTACCTCTACCCATCAGAACTTTTTACCCCTGAATGCAAGTTTAAAGAATCTGTTTTTGAAAATTATTATGTAATCTACTCATCCATGTTGTACAGACAACAGGAATCTGGTAGAGCCTGGTTTTTGGGATTAAATAAGGAAGGGCAAGCTATGAAAGGGAACAGAGTAAAGAAAACCAAACCAGCAGCTCATTTTCTACCCAAGCCATTGGAAGTTGCCATGTACCGAGAACCATCTTTGCATGATGTTGGGGAAACGGTCCCGAAGCCTGGGGTGACGCCAAGTAAAAGCACAAGTGCGTCTGCAATAATGAATGGAGGCAAACCAGTCAACAAGAGTAAGACAACATAG MDYDFKVKLSSERERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLIPSSRV**PGYIAGKATTCKCTPMELSMEPRMTALILHSSTSYQWDYVLLPSRE*KQGCI*P*MEKVTSTHQNFLPLNASLKNLFLKIIM*STHPCCTDNRNLVEPGFWD*IRKGKL*KGTE*RKPNQQLIFYPSHWKLPCTENHLCMMLGKRSRSLG*RQVKAQVRLQ**MEANQSTRVRQH FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Cyclin-dependent kinase 8 CMGC CDK CDK8 P49336 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33001 ABCA13::C7orf57 ENSG00000179869.15::ENSG00000164746.14 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2189 TRUE 4010 TRUE 1511 ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48193052:+ chr7:48211055-48687093:+ chr7:48232649:+ C7orf57 ENSG00000164746.14 protein_coding + + chr7:48035511-48061304:+ chr7:48052700:+ chr7:48075108-48100901:+ chr7:48092297:+ chr7:48198221,chr7:48198222 chr7:48052162,chr7:48052157 NA NA chr7:48237818,chr7:48237819 chr7:48091759,chr7:48091754 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.11Mb] 76 76 76 68.27 ONLY_REF_SPLICE YES_LDAS 1.6807 GT 1.8892 AG 1.8295 ENST00000435803.6 1-163 ENST00000348904.4 606-888 chr7|+|[0]48171484-48171552[2]|[0]48192959-48193052[0]<==>chr7|+|[2]48052700-48052923[0]|[1]48054595-48054606[0]|[1]48060226-48060272[2] atggggcatgccgggtgccagttcaaagccctgctgtggaagaattggctctgcagactcaggaacccggtccttttccttgctgaattcttctggccttgtatcctgtttgtaattctgacagttcttcgttttcaagaacctcccagatacagagacatttGCCTGGTCAAAAAAACAGTTCACCTACCAATTTTTCCAAACTCATTAGCAATGGTTATAAGGATGAGTGGTTGCAGCAGCAGCAGCGAGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCATCAGTGTTATCTCAGTCCCCACGAGACCTGGAAGGTCCCCAGGATGCAGCCAGGCTCCAGGATGCAGAGGCTTCTGAAGGTCCTGAGGACACCCCAGAGTCTTCTCAAAGCCCAGAAGAATCTGTATCTGCATCAACACCAGCAGAGCTCAAATAA MGHAGCQFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRDICLVKKTVHLPIFPNSLAMVIRMSGCSSSSELTQTRGPRRPPGHQCYLSPHETWKVPRMQPGSRMQRLLKVLRTPQSLLKAQKNLYLHQHQQSSN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33002 ABCA13::C7orf57 ENSG00000179869.15::ENSG00000164746.14 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2190 TRUE 4010 TRUE 1511 ABCA13 ENSG00000179869.15 protein_coding + + chr7:48171458-48647497:+ chr7:48193052:+ chr7:48211055-48687093:+ chr7:48232649:+ C7orf57 ENSG00000164746.14 protein_coding + + chr7:48035511-48061304:+ chr7:48052748:+ chr7:48075108-48100901:+ chr7:48092345:+ chr7:48198221,chr7:48198222 chr7:48052162,chr7:48052157 NA NA chr7:48237818,chr7:48237819 chr7:48091759,chr7:48091754 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.11Mb] 23 44 23 7.73 ONLY_REF_SPLICE YES_LDAS 0.358 GT 1.8892 AG 1.8062 ENST00000435803.6 1-163 ENST00000420324.5 741-975 chr7|+|[0]48171484-48171552[2]|[0]48192959-48193052[0]<==>chr7|+|[2]48052748-48052923[0]|[1]48054595-48054606[0]|[1]48060226-48060272[2] atggggcatgccgggtgccagttcaaagccctgctgtggaagaattggctctgcagactcaggaacccggtccttttccttgctgaattcttctggccttgtatcctgtttgtaattctgacagttcttcgttttcaagaacctcccagatacagagacatttCAATGGTTATAAGGATGAGTGGTTGCAGCAGCAGCAGCGAGCTGACTCAGACAAGAGGACCCCGAAGACCTCCAGGGCATCAGTGTTATCTCAGTCCCCACGAGACCTGGAAGGTCCCCAGGATGCAGCCAGGCTCCAGGATGCAGAGGCTTCTGAAGGTCCTGAGGACACCCCAGAGTCTTCTCAAAGCCCAGAAGAATCTGTATCTGCATCAACACCAGCAGAGCTCAAATAA MGHAGCQFKALLWKNWLCRLRNPVLFLAEFFWPCILFVILTVLRFQEPPRYRDISMVIRMSGCSSSSELTQTRGPRRPPGHQCYLSPHETWKVPRMQPGSRMQRLLKVLRTPQSLLKAQKNLYLHQHQQSSN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33008 DNASE2::MAST1 ENSG00000105612.10::ENSG00000105613.10 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2191 FALSE NA FALSE NA DNASE2 ENSG00000105612.10 protein_coding - - chr19:12875209-12881595:- chr19:12880802:- chr19:12986023-12992409:- chr19:12991616:- MAST1 ENSG00000105613.10 protein_coding + + chr19:12833951-12874952:+ chr19:12873324:+ chr19:12944765-12985766:+ chr19:12984138:+ chr19:12880265,chr19:12880651,chr19:12880655 chr19:12872760,chr19:12872762,chr19:12872758 NA NA chr19:12991079,chr19:12991465,chr19:12991469 chr19:12983574,chr19:12983576,chr19:12983572 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DNase_II-PARTIAL|18-346~|7.4e-134 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.00Mb];LOCAL_INVERSION:-:+:[260] 6 9 6 9 ONLY_REF_SPLICE YES_LDAS 0.1747 GT 1.7465 AG 1.8256 ENST00000222219.8 1-346 ENST00000251472.9 3264-4713 chr19|-|[0]12880802-12880880[0]|[2]12880972-12881152[2]|[1]12881290-12881375[0]<==>chr19|+|[2]12873324-12873511[0]|[1]12873609-12874870[2] atgatcccgctgctgctggcagcgctgctgtgcgtccccgccggggccctgacctgctacggggactccgggcagcctgtagactggttcgtggtctacaagctgccagctcttagagggtccggggaggcggcgcagagagggctgcagtacaagtatctggacgagagctccggaggctggcgggacggcagggcactcatcaacagcccggagggggccgtgggccgaagcctgcagccgctgtaccggagcaacaccagccagctcgccttcctgctctacaatgaccaaccgcctcaacccagcaaggctcaggactcttccatgcgtgggcacacgaaggCAAGAAGCGCAGCTCCCTCTTCCGGAAGATCACGAAGCAGTCGAACCTGCTGCATACTAGCCGCTCGCTGTCGTCGCTGAACCGCTCGCTGTCATCCAGCGATAGTCTCCCGGGCTCGCCTACGCACGGGCTGCCGGCGCGCTCGCCCACGCACAGCTACCGCTCCACGCCTGACTCCGCCTACCTAGGCGCCTCATCCCAGAGCAGCTCCCCAGCCTCGAGCACGCCCAACTCGCCTGCGTCGTCGGCGTCGCACCACATTCGGCCCAGCACGCTGCACGGACTGTCGCCAAAGCTCCATCGCCAGTACCGCTCTGCGCGATGCAAGTCGGCCGGCAACATCCCTCTATCGCCGCTGGCACACACGCCGTCCCCCACGCAGGCGTCACCGCCGCCACTGCCGGGCCACACGGTGGGCAGCTCGCACACTACTCAGAGCTTCCCGGCCAAACTGCACTCATCGCCTCCCGTCGTGCGCCCGCGCCCCAAGAGTGCCGAGCCCCCTCGCTCGCCGCTCCTCAAGCGCGTGCAGTCGGCCGAGAAGCTGGGAGCCTCTTTGAGTGCGGACAAGAAGGGCGCGCTGCGCAAACACAGCCTCGAGGTGGGCCACCCGGATTTCCGCAAGGACTTCCATGGCGAGCTGGCGCTGCATAGCCTTGCCGAGTCCGACGGTGAGACGCCCCCAGTCGAGGGCCTTGGCGCGCCCCGGCAGGTCGCCGTCCGCCGCCTGGGCCGACAGGAGTCACCTTTGAGCCTGGGCGCGGACCCGTTGCTGCCCGAGGGTGCCTCCAGGCCACCAGTGTCGAGCAAGGAGAAGGAATCCCCGGGGGGCGCCGAGGCGTGCACCCCACCCCGCGCGACGACCCCCGGTGGCCGGACCCTGGAGCGGGACGTCGGCTGCACGCGGCATCAGAGCGTGCAGACGGAGGATGGCACTGGCGGGATGGCCAGGGCTGTGGCCAAGGCGGCGCTGAGCCCGGTGCAGGAACACGAGACAGGCCGGCGCAGCAGCTCTGGCGAGGCGGGCACACCCCTGGTACCCATTGTCGTAGAGCCTGCGCGGCCCGGGGCTAAGGCTGTGGTGCCTCAGCCTCTGGGCGCGGACTCCAAGGGGTTGCAGGAACCCGCACCCCTGGCGCCTTCCGTGCCCGAGGCCCCCCGGGGCCGGGAGCGCTGGGTGTTGGAGGTGGTGGAGGAGCGCACCACGCTGAGCGGTCCTCGCTCCAAGCCCGCCTCCCCAAAGCTCTCCCCGGAGCCCCAGACACCCTCCCTAGCCCCAGCGAAGTGCAGTGCACCCAGCAGTGCAGTGACCCCAGTCCCACCCGCATCCCTCTTGGGCTCAGGCACCAAGCCTCAAGTGGGGCTGACCTCCCGGTGCCCTGCTGAAGCTGTGCCCCCAGCAGGCCTGACCAAAAAAGGAGTGTCCAGTCCCGCACCCCCGGGACCATAG MIPLLLAALLCVPAGALTCYGDSGQPVDWFVVYKLPALRGSGEAAQRGLQYKYLDESSGGWRDGRALINSPEGAVGRSLQPLYRSNTSQLAFLLYNDQPPQPSKAQDSSMRGHTKARSAAPSSGRSRSSRTCCILAARCRR*TARCHPAIVSRARLRTGCRRARPRTATAPRLTPPT*APHPRAAPQPRARPTRLRRRRRTTFGPARCTDCRQSSIASTALRDASRPATSLYRRWHTRRPPRRRHRRHCRATRWAARTLLRASRPNCTHRLPSCARAPRVPSPLARRSSSACSRPRSWEPL*VRTRRARCANTASRWATRISARTSMASWRCIALPSPTVRRPQSRALARPGRSPSAAWADRSHL*AWARTRCCPRVPPGHQCRARRRNPRGAPRRAPHPARRPPVAGPWSGTSAARGIRACRRRMALAGWPGLWPRRR*ARCRNTRQAGAAALARRAHPWYPLS*SLRGPGLRLWCLSLWARTPRGCRNPHPWRLPCPRPPGAGSAGCWRWWRSAPR*AVLAPSPPPQSSPRSPRHPP*PQRSAVHPAVQ*PQSHPHPSWAQAPSLKWG*PPGALLKLCPQQA*PKKECPVPHPRDH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Microtubule-associated serine/threonine-protein kinase 1 AGC MAST Q9Y2H9 TRUE Ovary,Fallopian_tube no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33009 DYSF::ZNF638 ENSG00000135636.16::ENSG00000075292.19 SCC25 SRR8616097 SRR8670748 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2192 FALSE NA FALSE NA DYSF ENSG00000135636.16 protein_coding + + chr2:71453561-71686763:+ chr2:71520904:+ chr2:71680691-71913893:+ chr2:71748034:+ ZNF638 ENSG00000075292.19 protein_coding + + chr2:71276561-71435069:+ chr2:71403870:+ chr2:71503691-71662199:+ chr2:71631000:+ chr2:71524423,chr2:71524422 chr2:71402840,chr2:71402836 NA NA chr2:71751553,chr2:71751552 chr2:71629970,chr2:71629966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|2-94|3.8e-23^PI3K_C2|35-89|0.0078^C2|253-342|5.3e-17^FerI|356-406|5.4e-24^C2|413-518|1.3e-16^PI3K_C2|452-500|0.014^C2|548-562|4.3^FerA|713-777|8.9e-26^FerB|804-877|3.5e-34^Pex24p|891-948|0.054^Ferlin_C|927-957|3.3^Pex24p|966-1062|5.3e-09^Pex24p|1067-1114|0.21 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.02Mb];LOCAL_REARRANGEMENT:+:[18653] 5 4 5 4 ONLY_REF_SPLICE YES_LDAS 0.1048 GT 1.7465 AG 1.6402 ENST00000410041.1 1-1149 ENST00000264447.9 2830-5937 chr2|+|[0]71466843-71466933[0]|[1]71480883-71480938[2]|[0]71481879-71481970[1]|[2]71503214-71503319[2]|[0]71511807-71511921[0]|[1]71513240-71513332[0]|[1]71513716-71513921[2]|[0]71515623-71515751[2]|[0]71516180-71516242[2]|[0]71516989-71517039[2]|[0]71520178-71520208[0]|[1]71520789-71520904[2]<==>chr2|+|[0]71403870-71403998[2]|[0]71405601-71405642[2]|[0]71406128-71406262[2]|[0]71408122-71408247[2]|[0]71418602-71418639[1]|[2]71422814-71424038[2]|[0]71424650-71424715[2]|[0]71426460-71427414[0]|[1]71428547-71428651[0]|[1]71431327-71431428[0]|[1]71433165-71433283[2]|[0]71434742-71434807[2] atgctgtgctgcctgctggtgagggccagcaacctccccagtgcgaagaaggaccggcgcagcgaccctgtcgcaagcctgactttccgaggggtgaagaagagaaccaaagtcatcaagaacagcgtgaaccctgtatggaatgagggatttgaatgggacctcaagggcatccccctggaccagggctctgagcttcatgtggtggtcaaagaccatgagacgatggggaggaacaggttcctgggggaagccaaggtcccactccgagaggtcctcgccacccctagtctgtccgccagcttcaatgcccccctgctggacaccaagaagcagcccacaggggcctcgctggtcctgcaggtgtcctacacaccgctgcctggagctgtgcccctgttcccgccccctactcctctggagccctccccgactctgcctgacctggatgtagtggcaggcgggggacagagccgggccgagacttggtccctgctcagtgacagcaccatggacacgagatactctggaaagaagtggccggcccccacggacacaggaggagaggaagacacagaggaccagggactcactggagatgaggcggagccattcctggatcaaagcggaggcccgggggctcccaccaccccaaggaaactaccttcacgtcctccgccccactaccccgggatcaaaagaaagcgaagtgcgcctacatctagaaagctgctgtcagacaaaccgcaggatttccagatcagggtccaggtgatcgaggggcgccagctgccgggggtgaacatcaagcctgtggtcaaggttaccgctgcagggcagaccaagcggacgcggatccacaagggaaacagcccactcttcaatgagactcttttcttcaacttgtttgactctcctggggagctgtttgatgagcccatctttatcacggtggtagactctcgttctctcaggacagatgctctcctcggggagttccggatggacgtgggcaccatttacagagagccccggcacgcctatctcaggaagtggctgctgctctcagaccctgatgacttctctgctggggccagaggctacctgaaaacaagcctttgtgtgctggggcctggggacgaagcgcctGCATATATAGAAATAAATAGAAAAGCTGCTGAGTCTATGGTAAAATTTTATACCTGCTTCCCAGTATTGATGGATGGAAATCAACTCTCAATAAGTATGGCTCCTGAAAACATGAATATAAAAGATGAGGAAGCTATATTTATAACCTTGGTAAAAGAAAATGACCCAGAGGCAAACATAGATACAATTTATGATCGATTTGTACATCTTGATAATTTACCGGAAGATGGACTTCAGTGTGTACTTTGTGTTGGACTTCAGTTTGGAAAAGTGGATCACCATGTATTCATAAGTAATAGAAACAAGGCAATTCTTCAGTTAGATAGTCCTGAATCTGCTCAGTCAATGTATAGCTTTCTGAAACAAAATCCACAAAATATTGGTGACCATATGTTGACCTGCTCATTATCTCCAAAGATAGACTTACCAGAGGTGCAAATTGAGCATGACCCAGAATTAGAAAAAGAAAGCCCTGGCTTGAAAAACAGTCCAATTGATGAAAGTGAGGTGCAAACAGCAACTGATAGTCCCTCTGTTAAACCTAATGAGCTTGAAGAAGAAAGTACTCCCAGCATTCAAACAGAAACTTTGGTACAGCAGGAAGAGCCTTGTGAGGAAGAAGCTGAAAAAGCAACATGTGATTCTGACTTTGCTGTTGAAACTTTGGAGCTTGAAACTCAAGGAGAGGAGGTCAAAGAAGAAATTCCTCTTGTAGCATCCGCTTCAGTCAGTATTGAACAATTCACTGAAAATGCCGAGGAGTGTGCTTTAAATCAGCAGATGTTTAACAGTGACTTGGAGAAGAAAGGGGCAGAAATTATTAACCCTAAAACAGCATTGTTACCATCTGACAGTGTGTTTGCAGAAGAAAGGAACCTCAAAGGAATTCTAGAAGAATCTCCATCTGAAGCAGAAGATTTCATTTCTGGAATTACACAGACTATGGTAGAAGCTGTAGCTGAAGTAGAAAAAAATGAAACTGTTTCGGAAATATTGCCATCAACTTGTATTGTGACGTTAGTACCAGGAATTCCCACTGGGGATGAGAAGACAGTGGACAAAAAGAATATTTCTGAAAAAAAAGGTAACATGGATGAAAAGGAGGAGAAGGAATTTAATACTAAGGAAACCAGAATGGATCTTCAAATAGGAACAGAGAAGGCTGAAAAGAATGAAGGTAGGATGGATGCAGAAAAGGTGGAAAAGATGGCAGCAATGAAAGAAAAGCCTGCAGAAAACACTTTATTCAAGGCATACCCAAATAAAGGAGTGGGTCAGGCTAATAAGCCTGATGAAACTAGTAAAACTAGTATTCTGGCTGTATCAGATGTATCTAGCAGTAAACCAAGCATCAAGGCTGTTATAGTCTCTTCTCCTAAGGCAAAAGCTACAGTTTCAAAAACTGAAAATCAGAAAAGTTTTCCAAAATCTGTGCCCAGAGATCAAATAAATGCTGAAAAGAAACTTTCAGCCAAGGAATTTGGTCTGCTTAAACCCACAAGTGCCAGGTCAGGCTTGGCAGAAAGCAGCAGTAAATTCAAACCTACTCAGAGCAGTCTTACCAGAGGAGGCAGTGGAAGGATCTCAGCCCTGCAAGGCAAGCTTTCTAAACTGGATTACAGAGATATAACAAAACAATCTCAGGAAACAGAGGCTAGACCTTCCATCATGAAACGGGATGACAGCAACAATAAGACTTTGGCTGAGCAAAACACTAAGAATCCTAAAAGCACTACTGGTAGAAGTTCCAAATCTAAAGAGGAGCCATTATTTCCATTTAATTTGGATGAATTTGTTACTGTGGATGAGGTTATAGAAGAAGTGAATCCTTCTCAGGCCAAGCAGAATCCACTAAAGGGAAAAAGGAAAGAAACTCTCAAAAATGTTCCTTTCTCTGAACTTAACTTAAAGAAGAAAAAGGGGAAAACTTCCACTCCTCGTGGTGTTGAGGGAGAACTATCTTTTGTGACATTGGATGAGATTGGGGAAGAGGAAGATGCAGCTGCACATCTAGCACAAGCTCTAGTCACTGTGGATGAAGTAATTGATGAAGAAGAACTAAATATGGAAGAAATGGTAAAAAATTCAAATTCACTTTTTACATTAGATGAATTAATTGACCAAGATGATTGCATTTCCCACAGTGAACCTAAAGATGTTACTGTTCTGTCAGTGGCTGAAGAACAAGATCTCCTCAAACAGGAACGCTTGGTAACTGTGGATGAAATTGGAGAAGTGGAAGAGCTACCTTTGAATGAGTCAGCAGACATAACTTTTGCCACTTTAAATACTAAAGGAAATGAAGGAGATACTGTAAGGGATTCCATTGGCTTCATTTCTTCTCAGGTGCCCGAAGACCCTTCTACTTTAGTTACTGTAGATGAAATACAAGATGACAGCAGTGATTTGCATTTAGTGACTTTGGATGAAGTAACTGAAGAGGATGAAGACTCTCTGGCGGATTTTAACAACCTTAAAGAAGAGCTTAATTTTGTTACTGTTGATGAAGTTGGAGAGGAGGAAGATGGAGATAATGATTTAAAAGTTGAGTTAGCACAAAGCAAAAATGACCATCCCACAGATAAAAAAGGGAATAGAAAGAAGAGAGCTGTGGACACAAAAAAGACAAAACTTGAATCCTTGTCCCAAGTGGGTCCAGTAAATGAGAATGTTATGGAAGAAGATCTAAAAACCATGATTGAAAGACACTTAACAGCTAAAACTCCAACCAAGAGAGTTAGAATTGGGAAAACTCTGCCATCAGAAAAAGCTGTTGTGACAGAACCAGCAAAAGGTGAAGAGGCCTTCCAGATGAGTGAAGTTGATGAGGAATCTGGATTAAAGGATTCAGAACCAGAGCGAAAACGCAAGAAGACTGAAGACTCTTCTTCAGGCAAATCAGTGGCGTCTGATGTCCCTGAGGAATTAGACTTTCTTGTACCTAAGGCTGGATTCTTCTGTCCAATTTGTTCCCTCTTCTACTCAGGTGAAAAAGCAATGACAAATCACTGCAAGAGTACACGTCATAAGCAAAATACTGAGAAATTCATGGCCAAGCAAAGAAAGGAAAAGGAGCAGAATGAGGCTGAAGAAAGAAGCTCTAGGTGA MLCCLLVRASNLPSAKKDRRSDPVASLTFRGVKKRTKVIKNSVNPVWNEGFEWDLKGIPLDQGSELHVVVKDHETMGRNRFLGEAKVPLREVLATPSLSASFNAPLLDTKKQPTGASLVLQVSYTPLPGAVPLFPPPTPLEPSPTLPDLDVVAGGGQSRAETWSLLSDSTMDTRYSGKKWPAPTDTGGEEDTEDQGLTGDEAEPFLDQSGGPGAPTTPRKLPSRPPPHYPGIKRKRSAPTSRKLLSDKPQDFQIRVQVIEGRQLPGVNIKPVVKVTAAGQTKRTRIHKGNSPLFNETLFFNLFDSPGELFDEPIFITVVDSRSLRTDALLGEFRMDVGTIYREPRHAYLRKWLLLSDPDDFSAGARGYLKTSLCVLGPGDEAPAYIEINRKAAESMVKFYTCFPVLMDGNQLSISMAPENMNIKDEEAIFITLVKENDPEANIDTIYDRFVHLDNLPEDGLQCVLCVGLQFGKVDHHVFISNRNKAILQLDSPESAQSMYSFLKQNPQNIGDHMLTCSLSPKIDLPEVQIEHDPELEKESPGLKNSPIDESEVQTATDSPSVKPNELEEESTPSIQTETLVQQEEPCEEEAEKATCDSDFAVETLELETQGEEVKEEIPLVASASVSIEQFTENAEECALNQQMFNSDLEKKGAEIINPKTALLPSDSVFAEERNLKGILEESPSEAEDFISGITQTMVEAVAEVEKNETVSEILPSTCIVTLVPGIPTGDEKTVDKKNISEKKGNMDEKEEKEFNTKETRMDLQIGTEKAEKNEGRMDAEKVEKMAAMKEKPAENTLFKAYPNKGVGQANKPDETSKTSILAVSDVSSSKPSIKAVIVSSPKAKATVSKTENQKSFPKSVPRDQINAEKKLSAKEFGLLKPTSARSGLAESSSKFKPTQSSLTRGGSGRISALQGKLSKLDYRDITKQSQETEARPSIMKRDDSNNKTLAEQNTKNPKSTTGRSSKSKEEPLFPFNLDEFVTVDEVIEEVNPSQAKQNPLKGKRKETLKNVPFSELNLKKKKGKTSTPRGVEGELSFVTLDEIGEEEDAAAHLAQALVTVDEVIDEEELNMEEMVKNSNSLFTLDELIDQDDCISHSEPKDVTVLSVAEEQDLLKQERLVTVDEIGEVEELPLNESADITFATLNTKGNEGDTVRDSIGFISSQVPEDPSTLVTVDEIQDDSSDLHLVTLDEVTEEDEDSLADFNNLKEELNFVTVDEVGEEEDGDNDLKVELAQSKNDHPTDKKGNRKKRAVDTKKTKLESLSQVGPVNENVMEEDLKTMIERHLTAKTPTKRVRIGKTLPSEKAVVTEPAKGEEAFQMSEVDEESGLKDSEPERKRKKTEDSSSGKSVASDVPEELDFLVPKAGFFCPICSLFYSGEKAMTNHCKSTRHKQNTEKFMAKQRKEKEQNEAEERSSR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33013 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2195 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59620173:+ chr17:57697045-57774317:+ chr17:57697534:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel-PARTIAL|19-42~|2.1e-10 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 102 65 102 65 ONLY_REF_SPLICE YES_LDAS 1.904 GT 1.9329 AG 1.8062 ENST00000700709.1 1-42 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33014 PDS5B::TDRD3 ENSG00000083642.19::ENSG00000083544.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2199 FALSE NA FALSE NA PDS5B ENSG00000083642.19 protein_coding + + chr13:32586452-32778019:+ chr13:32586593:+ chr13:33160589-33352157:+ chr13:33160730:+ TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60439688:+ chr13:60970591-61148012:+ chr13:61013822:+ chr13:32636348,chr13:32636342 chr13:60427977,chr13:60427968 NA NA chr13:33210485,chr13:33210479 chr13:61002111,chr13:61002102 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PDS5B:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:27.62Mb] 30 1 30 0.77 ONLY_REF_SPLICE YES_LDAS 0.3508 GT 1.7819 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33015 MAP4::CDC25A ENSG00000047849.22::ENSG00000164045.12 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2198 FALSE NA FALSE NA MAP4 ENSG00000047849.22 protein_coding - - chr3:47850690-48089272:- chr3:48088773:- chr3:47892180-48130762:- chr3:48130263:- CDC25A ENSG00000164045.12 protein_coding - - chr3:48157146-48188417:- chr3:48177988:- chr3:48198636-48229907:- chr3:48219478:- chr3:48002091,chr3:48002096 chr3:48180004,chr3:48180006 NA NA chr3:48043581,chr3:48043586 chr3:48221494,chr3:48221496 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MAP4:Oncogene"];["CDC25A:Oncogene"];["DEEPEST2019","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.07Mb];LOCAL_REARRANGEMENT:-:[67874] 29 4 29 4 ONLY_REF_SPLICE YES_LDAS 0.3762 GT 1.3996 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33016 ATXN3::IRAG2 ENSG00000066427.25::ENSG00000118308.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2201 FALSE NA FALSE NA ATXN3 ENSG00000066427.25 protein_coding - - chr14:92044496-92106621:- chr14:92106529:- chr14:92510840-92572965:- chr14:92572873:- IRAG2 ENSG00000118308.16 protein_coding + + chr12:25004342-25108335:+ chr12:25052235:+ chr12:25157276-25261269:+ chr12:25205169:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Josephin-PARTIAL|5-24~|1.2e-34 none none 24 0 24 0 ONLY_REF_SPLICE YES_LDAS 0.2736 GT 1.8892 AG 1.7232 ENST00000429774.6 1-24 ENST00000636465.1 2145-4365 chr14|-|[2]92106529-92106552[0]<==>chr12|+|[2]25052235-25052349[2]|[0]25052794-25052956[0]|[1]25061592-25061653[2]|[0]25062820-25062900[2]|[0]25063723-25063816[0]|[1]25066365-25066512[1]|[2]25069350-25069431[2]|[0]25079244-25079290[1]|[2]25079398-25079462[0]|[1]25079656-25079763[0]|[1]25083423-25083493[2]|[0]25088100-25088157[0]|[1]25089614-25089677[1]|[2]25089763-25089790[2]|[0]25090057-25090197[2]|[0]25096910-25097044[2]|[0]25101178-25101325[0]|[1]25102198-25102241[2]|[0]25103837-25103899[2]|[0]25104009-25104058[1]|[2]25104361-25104462[1]|[2]25106943-25107050[1]|[2]25107817-25108060[2] atggagtccatcttccacgagaaaTCAGAAACAACTAGAAGCCATTAAACAACTACAGGAAGATGCTGTCAACCAGGAAGGCATCCTTAGGAAGAGGCTCCAAGAAACCAGCCAACGGCTGGAGGATGTGGAGGAGCAGGGTAAGGATCGAGATCGAGAAGCCCACACTGCCAGTGAAAAAGCTACGTCTTTACTGCATAAATTAGAGGAAGCAATTTCGGAACAACGGAACCTTCAAACTATAAATACTGAATTATCGAACACTTGCCAGGCACTTCAGCAGAAGACAAGGAAACTGAAGACAACAATTGAGTCACTTCAAAAGGAGTTCATTGAAGGGGAACACCATGGCTTGCTGTTTCAGAGCTTTTTAGATGAGGAATTTCCTCACTATGATTCCCTGTCCTGCGCAGATGCAATTCAACAACCTCTTCAAGAAAAATTGCAGTGTTGCCACAAACTATATGGTGGTCAAGAAGCAAGAATACATCAGACACCCCTGACCTTGAAACATACGTGCTGGTACACACCTCTGCTGGATGCCTTATCTCTGGATAGTTTTACAGCAGTTCCAACCCTGGAATCAACACCTTTCTCAGGTGTAGCCAACCAAATCCACACTCTGTGTGAAAGGCCCACATATGGAGAAGTAAAGGATGGTGCTTTGGATGTAAAAAGACAACACAAGTGCCCAGGCCCCACAAGTGGCCCCAGCCCAGGAACGAATCTCTCAGGCTGCATCAGGATGAATGATGACCCAAGTATGGAAGAGAATGGTGTTGAACGCGTGTGTCCTGAGAGCCTGCTGCAGTCCAGGGAATATTCCTCACTACCATTACCCAGACACACTTCATCGACAGACGGTACTATAACTTCAAGTGATCCTGGATTAGAAATTCTGAATATGGCTTCTTGTGACCTTGACAGAAACTCGCTCTGTAAGAAAGAGGAGGATACAAGATCAGCTTCTCCCACGATAGAGGCCCAAGGCACAAGTCCAGCTCATGATAATATTGCATTCCAAGACTCTACGAGTAAGGATAAAACCATATTAAATCTGGAAGCCAAAGAGGAACCAGAAACAATAGAAGAACATAAAAAAGAACATGCTTCAGGAGACTCTGTGGTTTCCCCTCTTCCTGTAACCACTGTGAAATCGGTTAACCTTAGACAAAGTGAGAACACTTCTGCTAATGAGAAGGAGGTGGAGGCAGAATTTCTCAGATTATCTTTGGGATTTAAGTGTGACTGGTTTACCTTGGAGAAGAGAGTGAAGCTTGAAGAGAGGTCCCGTGACTTGGCAGAAGAAAATTTGAAGAAAGAAATCACTAACTGTTTAAAACTATTAGAGTCTTTAACACCTCTGTGTGAAGATGACAACCAGGCACAGGAAATCATTAAGAAGCTGGAGAAGAGTATAAAGTTTCTTAGCCAGTGTGCAGCACGAGTGGCCAGTAGGGCTGAGATGTTGGGAGCCATCAATCAGGAAAGCCGGGTTAGTAAAGCAGTTGAAGTGATGATTCAGCACGTAGAAAACTTGAAGAGGATGTATGCCAAAGAGCACGCTGAATTAGAAGAACTGAAACAGGTTCTTCTGCAGAATGAAAGGTCTTTCAATCCTCTTGAAGATGATGATGACTGCCAAATTAAAAAACGTTCAGCTTCTCTAAACTCCAAGCCATCTTCTCTACGAAGAGTGACTATTGCCTCTTTACCCAGAAATATTGGAAATGCAGGAATGGTGGCTGGGATGGAAAATAATGATCGATTCAGTAGAAGGTCAAGCAGTTGGCGTATTTTGGGGTCAAAGCAGAGTGAACACCGTCCCTCATTACCTCGATTTATTAGCACCTATTCCTGGGCAGATGCTGAAGAAGAAAAATGTGAACTAAAAACTAAAGATGACTCAGAGCCATCTGGAGAAGAAACAGTAGAAAGGACAAGGAAGCCAAGTCTTTCTGAAAAGAAAAATAATCCATCAAAGTGGGATGTCTCTTCAGTTTATGACACAATAGCTTCCTGGGCAACAAATCTCAAGTCCTCCATCAGAAAGGCTAATAAGGCCCTCTGGCTCTCTATTGCATTCATTGTACTGTTTGCAGCTTTGATGAGCTTCCTCACAGGCCAATTATTCCAGAAGTCTGTGGATGCCGCTCCCACACAGCAAGAGGACTCATGGACGTCTCTAGAACATATCTTGTGGCCATTTACCAGACTCCGACACAATGGGCCACCACCAGTGTGA MESIFHEKSETTRSH*TTTGRCCQPGRHP*EEAPRNQPTAGGCGGAG*GSRSRSPHCQ*KSYVFTA*IRGSNFGTTEPSNYKY*IIEHLPGTSAEDKETEDNN*VTSKGVH*RGTPWLAVSELFR*GISSL*FPVLRRCNSTTSSRKIAVLPQTIWWSRSKNTSDTPDLETYVLVHTSAGCLISG*FYSSSNPGINTFLRCSQPNPHSV*KAHIWRSKGWCFGCKKTTQVPRPHKWPQPRNESLRLHQDE**PKYGREWC*TRVS*EPAAVQGIFLTTITQTHFIDRRYYNFK*SWIRNSEYGFL*P*QKLAL*ERGGYKISFSHDRGPRHKSSS**YCIPRLYE*G*NHIKSGSQRGTRNNRRT*KRTCFRRLCGFPSSCNHCEIG*P*TK*EHFC**EGGGGRISQIIFGI*V*LVYLGEESEA*REVP*LGRRKFEERNH*LFKTIRVFNTSV*R*QPGTGNH*EAGEEYKVS*PVCSTSGQ*G*DVGSHQSGKPG**SS*SDDSARRKLEEDVCQRAR*IRRTETGSSAE*KVFQSS*R***LPN*KTFSFSKLQAIFSTKSDYCLFTQKYWKCRNGGWDGK**SIQ*KVKQLAYFGVKAE*TPSLITSIY*HLFLGRC*RRKM*TKN*R*LRAIWRRNSRKDKEAKSF*KEK*SIKVGCLFSL*HNSFLGNKSQVLHQKG**GPLALYCIHCTVCSFDELPHRPIIPEVCGCRSHTARGLMDVSRTYLVAIYQTPTQWATTSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33017 DTL::ENSG00000229983 ENSG00000143476.18::ENSG00000229983.1 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DTL ENSG00000143476.18 protein_coding + + chr1:212035553-212107400:+ chr1:212080750:+ chr1:212208895-212280742:+ chr1:212254092:+ ENSG00000229983 ENSG00000229983.1 lncRNA + + chr1:212168207-212190259:+ chr1:212190041:+ chr1:212341549-212363601:+ chr1:212363383:+ chr1:212088268,chr1:212088268 chr1:212170667,chr1:212170664 NA NA chr1:212261610,chr1:212261610 chr1:212344009,chr1:212344006 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 22 4 22 4 ONLY_REF_SPLICE YES_LDAS 0.2964 GT 1.9329 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3122 chr1:212077613-212077685:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33020 DNM2::CARM1 ENSG00000079805.19::ENSG00000142453.13 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA DNM2 ENSG00000079805.19 protein_coding + + chr19:10718055-10833488:+ chr19:10718403:+ chr19:10828731-10944164:+ chr19:10829079:+ CARM1 ENSG00000142453.13 protein_coding + + chr19:10871553-10923075:+ chr19:10904951:+ chr19:10982229-11033751:+ chr19:11015627:+ chr19:10724197,chr19:10724195 chr19:10900368,chr19:10900363 NA NA chr19:10834873,chr19:10834871 chr19:11011044,chr19:11011039 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MMR_HSR1-PARTIAL|33-161~|5.1e-06^Dynamin_N-PARTIAL|34-161~|2.4e-58 PrmA-PARTIAL|~221-257|2.9e-13^Methyltransf_25-PARTIAL|~221-283|8.2e-12^MTS-PARTIAL|~221-286|7.5e-11^Methyltransf_9-PARTIAL|~221-285|2.3e-09^Methyltransf_11-PARTIAL|~221-285|8.9e-09^Methyltransf_31-PARTIAL|~221-286|2e-08^PRMT5-PARTIAL|~221-282|2.3e-08^Methyltransf_23-PARTIAL|~221-259|1.5e-07^Methyltransf_18-PARTIAL|~221-266|1.9e-06^Methyltransf_12-PARTIAL|~221-283|1.2e-05^Met_10-PARTIAL|~221-276|7.1e-06^FtsJ-PARTIAL|~221-232|1.7e-05^CMAS-PARTIAL|~221-286|4.3e-05^TehB-PARTIAL|~221-272|2.3e-05^Methyltransf_32-PARTIAL|~221-252|0.00011^PRMT5_C|372-435|4.8e-05^MTS|426-451|4.1^Methyltransf_12|460-484|4.5 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.04Mb];NEIGHBORS[38025] 16 7 16 7 ONLY_REF_SPLICE YES_LDAS 0.2622 GT 1.8892 AG 1.5656 ENST00000585892.5 1-161 ENST00000327064.9 221-1827 chr19|+|[0]10718243-10718403[1]<==>chr19|+|[1]10904951-10905076[0]|[1]10908039-10908145[2]|[0]10909103-10909207[2]|[0]10912184-10912294[2]|[0]10913877-10914054[0]|[1]10916407-10916497[1]|[2]10916696-10916777[2]|[0]10919595-10919680[1]|[2]10919877-10919966[1]|[2]10920436-10920573[1]|[2]10920659-10920748[1]|[2]10920834-10920946[0]|[1]10921050-10921127[0]|[1]10921375-10921443[0]|[1]10921615-10921757[2] atgggcaaccgcgggatggaagagctgatcccgctggtcaacaaactgcaggacgccttcagctccatcggccagagctgccacctggacctgccgcagatcgctgtagtgggcggccagagcgccggcaagagctcggtgctggagaacttcgtgggccgATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCGTGTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGCGTCCTCATCCAGTTCGCCACACCCAACGATTTCTGTTCCTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCTGTGTTCAGCGAGCGGACGGAGGAGTCTTCTGCCGTGCAGTACTTCCAGTTTTATGGCTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACAGGCACCTACCAGCGCGCCATCCTGCAAAACCACACCGACTTCAAGGACAAGATCGTTCTTGATGTTGGCTGTGGCTCTGGGATCCTGTCGTTTTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGGAGGCCAGCACCATGGCCCAGCACGCTGAGGTCTTGGTGAAGAGTAACAACCTGACGGACCGCATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGACATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCTGAAGCCCAGCGGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGCAGTTCACCAAGGCCAACTTCTGGTACCAGCCATCTTTCCATGGAGTGGACCTGTCGGCCCTCCGAGGTGCCGCGGTGGATGAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTGTCAAGTACACGGTGAACTTCTTAGAAGCCAAAGAAGGAGATTTGCACAGGATAGAAATCCCATTCAAATTCCACATGCTGCATTCAGGGCTGGTCCACGGCCTGGCTTTCTGGTTTGACGTTGCTTTCATCGGCTCCATAATGACCGTGTGGCTGTCCACAGCCCCGACAGAGCCCCTGACCCACTGGTACCAGGTGCGGTGCCTGTTCCAGTCACCACTGTTCGCCAAGGCAGGGGACACGCTCTCAGGGACATGTCTGCTTATTGCCAACAAAAGACAGAGCTACGACATCAGTATTGTGGCCCAGGTGGACCAGACCGGCTCCAAGTCCAGTAACCTCCTGGATCTGAAAAACCCCTTCTTTAGATACACGGGCACAACGCCCTCACCCCCACCCGGCTCCCACTACACATCTCCCTCGGAAAACATGTGGAACACGGGCAGCACCTACAACCTCAGCAGCGGGATGGCCGTGGCAGGGATGCCGACCGCCTATGACTTGAGCAGTGTTATTGCCAGTGGCTCCAGCGTGGGCCACAACAACCTGATTCCTTTAGCCAACACGGGGATTGTCAATCACACCCACTCCCGGATGGGCTCCATAATGAGCACGGGGATTGTCCAAGGGTCCTCCGGCGCCCAGGGCAGTGGTGGTGGCAGCACGAGTGCCCACTATGCAGTCAACAGCCAGTTCACCATGGGCGGCCCCGCCATCTCCATGGCGTCGCCCATGTCCATCCCGACCAACACCATGCACTACGGGAGCTAG MGNRGMEELIPLVNKLQDAFSSIGQSCHLDLPQIAVVGGQSAGKSSVLENFVGR*RCVCL*VLSVPRDRVQPCGQAVLHHHPGLQQRPHPVRHTQRFLFLLQHPENLPGPHPGAVCVQRADGGVFCRAVLPVLWLPVPAAEHDAGLRADRHLPARHPAKPHRLQGQDRS*CWLWLWDPVVFCRPSWSTENLRGGGQHHGPAR*GLGEE*QPDGPHRGHPGQGGGGVTPRAGGHHHLGAHGLHALQRAHAGELPPRQEVPEAQRKHVSYHW*RPPCTLHG*TALHGAVHQGQLLVPAIFPWSGPVGPPRCRGG*VFPAACGGHI*HPDPDGQVCQVHGELLRSQRRRFAQDRNPIQIPHAAFRAGPRPGFLV*RCFHRLHNDRVAVHSPDRAPDPLVPGAVPVPVTTVRQGRGHALRDMSAYCQQKTELRHQYCGPGGPDRLQVQ*PPGSEKPLL*IHGHNALTPTRLPLHISLGKHVEHGQHLQPQQRDGRGRDADRL*LEQCYCQWLQRGPQQPDSFSQHGDCQSHPLPDGLHNEHGDCPRVLRRPGQWWWQHECPLCSQQPVHHGRPRHLHGVAHVHPDQHHALREL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE dynamin 2 1 Yes T-ALL leukaemia_lymphoma TSG frameshift, nonsense, splice_site, missense, other FALSE NA NA NA NA NA NA NA NA NA 33021 AKAP1::SLC13A2 ENSG00000121057.13::ENSG00000007216.16 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2202 FALSE NA FALSE NA AKAP1 ENSG00000121057.13 protein_coding + + chr17:57085092-57121346:+ chr17:57085398:+ chr17:55162453-55198707:+ chr17:55162759:+ SLC13A2 ENSG00000007216.16 protein_coding + + chr17:28473293-28497781:+ chr17:28489214:+ chr17:26800311-26824799:+ chr17:26816232:+ chr17:57101223 chr17:28477180 NA NA chr17:55178584 chr17:26804198 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:28.59Mb] 11 0 11 0 ONLY_REF_SPLICE YES_LDAS 0.1254 GT 1.8295 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33024 CRK::SMG6 ENSG00000167193.8::ENSG00000070366.14 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2200 FALSE NA FALSE NA CRK ENSG00000167193.8 protein_coding - - chr17:1420689-1463162:- chr17:1455877:- chr17:1323983-1366456:- chr17:1359171:- SMG6 ENSG00000070366.14 protein_coding - - chr17:2059839-2303785:- chr17:2300664:- chr17:1963133-2207079:- chr17:2203958:- chr17:1451837,chr17:1451843 chr17:2302139,chr17:2302142 NA NA chr17:1355131,chr17:1355137 chr17:2205433,chr17:2205436 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SH3_2|8-20|0.6^SH3_1|10-20|2.9^SH2|13-104|1.6e-22^SH3_2|136-189|2.6e-14^SH3_10|136-183|1.6e-05^SH3_1|138-184|1e-18^SH3_9|139-188|2e-12^DUF3804|139-156|1.1^SH3_2-PARTIAL|239-241~|4e-17 PIN_4|152-178|3.2^EST1|578-628|0.23^EST1|638-742|1.8e-16^EST1_DNA_bind|751-1104|3.4e-59^PIN_4|1248-1408|4.5e-26^PIN_9|1256-1331|1.5e-05^PIN_9|1386-1406|0.24 ["CRK:Oncogene"];["SMG6:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.60Mb] 9 9 9 9 ONLY_REF_SPLICE YES_LDAS 0.2052 GT 1.3753 AG 1.5546 ENST00000300574.3 1-241 ENST00000263073.11 89-4260 chr17|-|[0]1455877-1456117[0]<==>chr17|-|[2]2061492-2061622[1]|[0]2065073-2065154[0]|[2]2065468-2065679[1]|[0]2068778-2068931[0]|[2]2081810-2081956[0]|[2]2085725-2085901[0]|[2]2172658-2172859[2]|[1]2186663-2186831[1]|[0]2188399-2188515[1]|[0]2236492-2236637[2]|[1]2244658-2244719[0]|[2]2282647-2282859[0]|[2]2283625-2283735[0]|[2]2292552-2292630[2]|[1]2292871-2292977[0]|[2]2297243-2297353[0]|[2]2297863-2298055[2]|[1]2298906-2300664[1] atggcgggcaacttcgactcggaggagcggagtagctggtactgggggaggttgagtcggcaggaggcggtggcgctgctgcagggccagcggcacggggtgttcctggtgcgggactcgagcaccagccccggggactatgtgctcagcgtctcagagaactcgcgcgtctcccactacatcatcaacagcagcggcccgcgcccgccggtgccaccgtcgcccgcccagcctccgcccgAAAACATGAAGGAATTAAAGGAGGCCAGGCCGCGCAAAGATAACAGGCGTCCAGATCTGGAAATCTATAAGCCTGGCCTTTCTCGGCTAAGGAACAAGCCCAAAATCAAGGAACCCCCTGGGAGTGAGGAATTCAAAGATGAAATTGTTAATGACCGAGATTGCTCTGCTGTTGAAAATGGTACACAGCCCGTTAAAGATGTCTGCAAGGAACTGAACAACCAAGAGCAGAATGGTCCTATAGACCCAGAAAATAATCGGGGACAAGAATCCTTTCCTAGGACTGCTGGACAAGAGGATCGTAGTCTAAAAATTATCAAAAGAACAAAGAAACCCGACCTGCAGATCTATCAGCCTGGACGACGTTTGCAGACTGTTAGCAAAGAATCCGCCAGTCGGGTGGAGGAGGAAGAAGTCCTCAACCAGGTAGAACAACTGAGAGTAGAGGAAGATGAGTGTAGGGGAAATGTTGCGAAGGAGGAAGTTGCGAATAAACCAGACAGGGCTGAGATAGAAAAGAGCCCAGGTGGTGGGAGAGTAGGGGCTGCAAAAGGAGAAAAAGGAAAGAGGATGGGAAAAGGGGAGGGGGTGAGGGAAACCCACGACGACCCAGCCCGCGGGAGGCCGGGCTCCGCAAAGCGCTACTCCCGCTCAGACAAACGAAGGAATCGCTACCGCACGCGCAGCACCAGCTCAGCTGGCAGCAACAACAGCGCTGAGGGAGCTGGCCTGACGGATAATGGATGTCGCCGCCGCCGACAGGATAGGACCAAGGAGAGGCCACGACTGAAGAAGCAAGTGTCTGTGTCCTCAACCGATTCCTTAGACGAGGACAGAATTGATGAGCCTGATGGATTAGGACCCAGGAGAAGTTCAGAAAGGAAGAGACATTTAGAAAGAAACTGGTCTGGCCGTGGGGAGGGTGAGCAGAAAAACAGTGCTAAAGAATATCGAGGCACTCTTCGTGTCACTTTCGATGCAGAAGCCATGAACAAAGAGTCTCCCATGGTGAGGTCAGCCAGGGATGATATGGATAGAGGAAAGCCTGACAAAGGCTTGAGCAGTGGGGGCAAAGGCTCTGAGAAGCAGGAGTCCAAAAACCCGAAACAAGAACTTCGGGGTCGTGGTCGTGGCATTCTGATTTTGCCTGCCCATACCACCCTATCTGTCAATTCAGCAGGTTCTCCAGAGTCCGCGCCTTTGGGACCTCGGCTTTTGTTTGGATCTGGTAGTAAGGGATCTCGGAGTTGGGGCCGTGGAGGCACCACACGCCGATTGTGGGACCCAAACAATCCTGATCAGAAACCTGCTCTAAAGACTCAGACGCCCCAGCTACATTTCTTGGACACTGATGATGAAGTCAGCCCTACATCTTGGGGTGACTCACGCCAGGCTCAGGCATCTTACTATAAGTTTCAAAACTCTGACAACCCCTATTATTACCCCCGGACACCAGGCCCTGCCTCCCAGTATCCCTATACGGGCTATAACCCTCTACAGTACCCAGTGGGCCCTACGAATGGTGTGTACCCAGGGCCTTACTACCCAGGCTACCCGACTCCGTCAGGACAGTATGTGTGTAGCCCTCTACCTACCAGCACCATGAGTCCCGAGGAGGTAGAGCAGCACATGAGGAACCTGCAGCAACAGGAGCTGCACAGGCTTCTCCGGGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTCTCCAGGGACCGCATCAGTCCGGAGGGCCTGGAGAAGATGGCGCAACTCAGAGCTGAACTGCTGCAGCTATATGAGCGCTGTATTCTATTAGATATTGAGTTCTCTGATAATCAGAATGTGGATCAGATCCTGTGGAAGAATGCTTTCTATCAGGTGATTGAGAAGTTCAGGCAACTTGTCAAGGATCCGAATGTTGAGAACCCAGAACAGATTCGGAACAGACTTTTGGAGCTCTTGGATGAGGGTAGTGACTTCTTTGATAGTTTGCTTCAGAAGCTGCAGGTTACTTACAAGTTCAAACTGGAAGACTACATGGATGGTCTTGCCATTCGCAGCAAGCCATTACGCAAGACAGTAAAATATGCCTTGATCAGTGCCCAGCGATGCATGATATGCCAAGGAGATATTGCTAGGTACCGGGAGCAAGCCAGTGATACAGCGAATTATGGGAAAGCACGCAGTTGGTACCTGAAGGCCCAGCACATTGCTCCCAAGAATGGGCGCCCCTATAACCAGTTGGCTTTGCTGGCAGTGTATACGAGGAGGAAGCTTGACGCTGTCTATTACTATATGCGCAGTTTAGCTGCCAGCAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAGCTTGTTTGAAGAGACCAAGCGGAAGGCAGAACAGATGGAAAAGAAGCAACATGAGGAATTTGACCTGAGCCCTGACCAGTGGCGGAAAGGAAAGAAGTCTACTTTCCGGCATGTTGGAGATGACACCACTCGCCTGGAGATCTGGATTCATCCATCCCATCCACGGTCTTCCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAAGAGAATGGGCTGGGCAGCCTGAGTCCCAGTGATCTGAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGAGACATTCCCTGCAGTGGCTGAGAAGGTCCTCAAGGAGTTCCAGGTGTTACTGCAGCACAGCCCCTCTCCCATTGGAAGTACCCGCATGCTGCAGCTTATGACCATCAATATGTTTGCAGTACACAACTCCCAGCTGAAAGACTGCTTCTCGGAGGAGTGCCGCTCTGTGATCCAGGAACAAGCCGCAGCTCTGGGCTTGGCCATGTTTTCTCTACTGGTCCGCCGCTGCACCTGCTTACTTAAGGAGTCCGCCAAAGCTCAGCTGTCCTCTCCTGAGGACCAGGATGACCAAGACGACATCAAGGTGTCTTCCTTTGTCCCGGACCTGAAGGAGCTGCTCCCCAGTGTCAAAGTCTGGTCAGATTGGATGCTCGGCTACCCGGACACCTGGAATCCTCCTCCCACATCCCTGGATCTGCCCTCGCATGTTGCTGTGGATGTATGGTCGACGCTGGCTGATTTCTGTAACATACTGACTGCAGTGAATCAGTCTGAGGTGCCACTGTACAAGGACCCGGATGATGACCTCACCCTTCTTATCCTGGAAGAGGATCGGCTTCTCTCGGGCTTTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGCTACGTGGAGAAAACCTCGGATAAGGTTATTGCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTCTGCTGGCATTCAAGGGTGGAAAGTATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGGAAGCCAAGAGGGAACACGACTGGAAGATGAGGAGGAGGATGTGGTGATTGAAGACTTTGAGGAAGATTCAGAGGCTGAAGGCAGCGGAGGCGAGGATGACATCAGGGAGCTTCGGGCCAAGAAGCTGGCTCTGGCCAGGAAGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGCTGTCCTGGAGGACCACAGTCAGATGAGGCAGATGGAGCTCGAAATCAGACCTTTGTTCCTCGTACCAGACACCAACGGCTTCATTGACCACCTGGCCAGTCTGGCGCGGCTGCTGGAGAGCAGGAAGTACATCCTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGACGGCCTGGCCAAGGGGCAGGAGACAGACCACCGGGCTGGGGGCTACGCCCGTGTGGTACAAGAGAAGGCCCGCAAGTCCATCGAGTTCCTCGAGCAGCGATTCGAGAGTCGGGACTCTTGCCTGCGAGCCCTGACCAGCCGTGGCAATGAACTCGAATCCATCGCCTTCCGCAGTGAGGACATCACTGGCCAGCTGGGTAACAACGATGATCTCATCCTGTCCTGCTGCCTCCACTACTGCAAAGACAAGGCTAAGGACTTCATGCCCGCCAGCAAAGAGGAGCCAATCCGGCTACTGCGGGAGGTGGTGCTGTTGACGGATGACCGGAACCTGCGTGTGAAGGCGCTCACAAGGAATGTTCCTGTACGGGACATCCCAGCCTTCCTCACGTGGGCCCAGGTGGGCTGA MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYIINSSGPRPPVPPSPAQPPPENMKELKEARPRKDNRRPDLEIYKPGLSRLRNKPKIKEPPGSEEFKDEIVNDRDCSAVENGTQPVKDVCKELNNQEQNGPIDPENNRGQESFPRTAGQEDRSLKIIKRTKKPDLQIYQPGRRLQTVSKESASRVEEEEVLNQVEQLRVEEDECRGNVAKEEVANKPDRAEIEKSPGGGRVGAAKGEKGKRMGKGEGVRETHDDPARGRPGSAKRYSRSDKRRNRYRTRSTSSAGSNNSAEGAGLTDNGCRRRRQDRTKERPRLKKQVSVSSTDSLDEDRIDEPDGLGPRRSSERKRHLERNWSGRGEGEQKNSAKEYRGTLRVTFDAEAMNKESPMVRSARDDMDRGKPDKGLSSGGKGSEKQESKNPKQELRGRGRGILILPAHTTLSVNSAGSPESAPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKTQTPQLHFLDTDDEVSPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYNPLQYPVGPTNGVYPGPYYPGYPTPSGQYVCSPLPTSTMSPEEVEQHMRNLQQQELHRLLRVADNQELQLSNLLSRDRISPEGLEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRCMICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPSHVAVDVWSTLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGTRLEDEEEDVVIEDFEEDSEAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDHSQMRQMELEIRPLFLVPDTNGFIDHLASLARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLEQRFESRDSCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEEPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33026 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 SCC4 SRR8616098 SRR8670747 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85496166:- chr1:85947964-86043933:- chr1:85961849:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- chr1:85491449,chr1:85491142,chr1:85491351 chr1:85491451,chr1:85487986,chr1:85491489 NA NA chr1:85957132,chr1:85956825,chr1:85957034 chr1:85957134,chr1:85953669,chr1:85957172 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 5 6 5 4.9 ONLY_REF_SPLICE YES_LDAS 0.1129 GT 1.5628 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33027 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2203 TRUE 4036 TRUE 1518 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59674843:+ chr17:57697045-57774317:+ chr17:57752204:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59688112,chr17:59676211 chr17:59826743,chr17:59825171 NA NA chr17:57765473,chr17:57753572 chr17:57904104,chr17:57902532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2^Clathrin|984-1124|1.2e-37^TPR_8|1060-1079|0.83^TPR_14|1093-1118|0.71^Coatomer_WDAD|1094-1168|1.7e-08^TPR_8|1094-1107|4^ANAPC3|1095-1135|0.0042^TPR_19|1096-1130|0.013^TPR_14|1110-1136|0.2^TPR_1|1111-1136|0.00018^TPR_2|1111-1136|0.0018^TPR_8|1112-1136|0.0053^TPR_7|1113-1135|0.02^Clathrin|1134-1272|9e-36^TPR_14|1142-1172|0.031^TPR_7|1152-1170|0.05^TPR_2|1207-1224|3.4^ANAPC3|1226-1252|0.41^TPR_7|1230-1246|0.22^TPR_8|1230-1247|0.23^TPR_1|1231-1247|0.19^TPR_19|1231-1246|6.7^TPR_2|1231-1251|0.51^TPR_14|1232-1252|0.45^Coatomer_WDAD|1238-1310|0.0089^Clathrin|1281-1421|3.5e-33^TPR_14|1288-1326|0.023^TPR_7|1295-1316|0.016^TPR_8|1295-1318|0.46^TPR_8|1360-1383|1.9^TPR_1|1369-1380|2.5^Clathrin|1428-1570|7.4e-36^TPR_14|1540-1564|9.4^TPR_8|1608-1620|7 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 82 55 82 36.97 ONLY_REF_SPLICE YES_LDAS 1.1996 GT 1.3753 AG 1.8062 ENST00000700709.1 1-2576 ENST00000262291.9 975-1221 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]|[0]59660391-59660588[2]|[0]59661443-59661643[2]|[0]59663842-59663994[2]|[0]59664787-59664909[2]|[0]59666103-59666240[2]|[0]59666480-59666644[2]|[0]59666797-59666977[0]|[1]59668777-59668940[2]|[0]59673647-59673772[2]|[0]59674701-59674843[1]<==>chr17|+|[2]59838295-59838397[2]|[0]59839768-59839911[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaagttctgtcagtgtgtgtggaagaagaaaacataattccttacatcaccaatgttctacaaaatcctgatttggctctgagaatggctgtacgtaataacttagccggtgctgaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcggaggcagcaaaggtggctgctaatgcaccaaagggaattcttcgtactccagacactatccgtcggttccagagtgtcccagcccagccaggtcaaacttctcctctacttcagtactttggtatccttttggaccagggacagctcaacaaatacgaatccttagagctttgtaggcctgtacttcagcaagggcgaaaacagcttttggagaaatggttaaaagaagataagctggaatgttctgaagaactgggtgatcttgtgaaatctgtggaccctacattggcacttagtgtgtacctaagggctaacgtcccaaataaagtcattcagtgctttgcagaaacaggtcaagtccaaaagattgttttatatgctaaaaaagttggatacactccagattggatatttctgctgagaaatgtaatgcgaatcagtccagatcagggacagcagtttgcccaaatgttagttcaagatgaagagcctcttgctgacatcacacagattgtagatgtctttatggaatacaatctaattcagcagtgtactgcattcttgcttgatgctctgaagaataatcgcccatctgaaggtcctttacagacgcggttacttgagatgaaccttatgcatgcgcctcaagttgcagatgctattctaggcaatcagatgttcacacattatgaccgggctcatattgctcaactgtgtgaaaaggctggcctactgcagcgtgcattagaacatttcactgatttatatgatataaaacgtgcagtggttcacacccatcttcttaaccctgagtggttagtcaactactttggttccttatcagtagaagactccctagaatgtctcagagccatgctgtctgccaacatccgtcagaatctgcagatttgtgttcaggtggcttctaaatatcatgaacaactgtcaactcagtctctgattgaactttttgaatctttcaagagttttgaaggtctcttttattttctgggatccattgttaactttagccaggacccagatgtgcactttaaatatattcaggcagcttgcaagactgggcaaatcaaagaagtagaaagaatctgtagagaaagcaactgctacgatcctgagcgagtcaagaattttcttaaggaagcaaaactaacagatcagctaccacttatcattgtgtgtgatcgatttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatatagagatatatgtacagaaggtgaatccaagtcgacttcctgtagttattggaggattacttgatgttgactgttctgaagatgtcataaaaaacttgattcttgttgtaagaggtcaattctctactgatgagcttgttgctgaggttgaaaaaagaaacagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNSAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33030 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2204 TRUE 4036 TRUE 1518 CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59685808:+ chr17:57697045-57774317:+ chr17:57763169:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59688112 chr17:59826743 NA NA chr17:57765473 chr17:57904104 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2^Clathrin|984-1124|1.2e-37^TPR_8|1060-1079|0.83^TPR_14|1093-1118|0.71^Coatomer_WDAD|1094-1168|1.7e-08^TPR_8|1094-1107|4^ANAPC3|1095-1135|0.0042^TPR_19|1096-1130|0.013^TPR_14|1110-1136|0.2^TPR_1|1111-1136|0.00018^TPR_2|1111-1136|0.0018^TPR_8|1112-1136|0.0053^TPR_7|1113-1135|0.02^Clathrin|1134-1272|9e-36^TPR_14|1142-1172|0.031^TPR_7|1152-1170|0.05^TPR_2|1207-1224|3.4^ANAPC3|1226-1252|0.41^TPR_7|1230-1246|0.22^TPR_8|1230-1247|0.23^TPR_1|1231-1247|0.19^TPR_19|1231-1246|6.7^TPR_2|1231-1251|0.51^TPR_14|1232-1252|0.45^Coatomer_WDAD|1238-1310|0.0089^Clathrin|1281-1421|3.5e-33^TPR_14|1288-1326|0.023^TPR_7|1295-1316|0.016^TPR_8|1295-1318|0.46^TPR_8|1360-1383|1.9^TPR_1|1369-1380|2.5^Clathrin|1428-1570|7.4e-36^TPR_14|1540-1564|9.4^TPR_8|1608-1620|7 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 26 69 26 32.03 ONLY_REF_SPLICE YES_LDAS 0.5852 GT 1.8892 AG 1.8062 ENST00000700709.1 1-4842 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]|[0]59660391-59660588[2]|[0]59661443-59661643[2]|[0]59663842-59663994[2]|[0]59664787-59664909[2]|[0]59666103-59666240[2]|[0]59666480-59666644[2]|[0]59666797-59666977[0]|[1]59668777-59668940[2]|[0]59673647-59673772[2]|[0]59674701-59674843[1]|[2]59676954-59677188[2]|[0]59679397-59679519[2]|[0]59680912-59681057[1]|[2]59681295-59681478[2]|[0]59681647-59681839[0]|[1]59682271-59682428[2]|[0]59682629-59682793[2]|[0]59682907-59683014[2]|[0]59683095-59683262[2]|[0]59683387-59683536[2]|[0]59683625-59683756[2]|[0]59683875-59683985[2]|[0]59685056-59685226[2]|[0]59685587-59685808[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaagttctgtcagtgtgtgtggaagaagaaaacataattccttacatcaccaatgttctacaaaatcctgatttggctctgagaatggctgtacgtaataacttagccggtgctgaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcggaggcagcaaaggtggctgctaatgcaccaaagggaattcttcgtactccagacactatccgtcggttccagagtgtcccagcccagccaggtcaaacttctcctctacttcagtactttggtatccttttggaccagggacagctcaacaaatacgaatccttagagctttgtaggcctgtacttcagcaagggcgaaaacagcttttggagaaatggttaaaagaagataagctggaatgttctgaagaactgggtgatcttgtgaaatctgtggaccctacattggcacttagtgtgtacctaagggctaacgtcccaaataaagtcattcagtgctttgcagaaacaggtcaagtccaaaagattgttttatatgctaaaaaagttggatacactccagattggatatttctgctgagaaatgtaatgcgaatcagtccagatcagggacagcagtttgcccaaatgttagttcaagatgaagagcctcttgctgacatcacacagattgtagatgtctttatggaatacaatctaattcagcagtgtactgcattcttgcttgatgctctgaagaataatcgcccatctgaaggtcctttacagacgcggttacttgagatgaaccttatgcatgcgcctcaagttgcagatgctattctaggcaatcagatgttcacacattatgaccgggctcatattgctcaactgtgtgaaaaggctggcctactgcagcgtgcattagaacatttcactgatttatatgatataaaacgtgcagtggttcacacccatcttcttaaccctgagtggttagtcaactactttggttccttatcagtagaagactccctagaatgtctcagagccatgctgtctgccaacatccgtcagaatctgcagatttgtgttcaggtggcttctaaatatcatgaacaactgtcaactcagtctctgattgaactttttgaatctttcaagagttttgaaggtctcttttattttctgggatccattgttaactttagccaggacccagatgtgcactttaaatatattcaggcagcttgcaagactgggcaaatcaaagaagtagaaagaatctgtagagaaagcaactgctacgatcctgagcgagtcaagaattttcttaaggaagcaaaactaacagatcagctaccacttatcattgtgtgtgatcgatttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatatagagatatatgtacagaaggtgaatccaagtcgacttcctgtagttattggaggattacttgatgttgactgttctgaagatgtcataaaaaacttgattcttgttgtaagaggtcaattctctactgatgagcttgttgctgaggttgaaaaaagaaacagattgaaactgcttctgccttggctagaggccagaattcatgagggctgtgaggagcctgctactcacaatgccttagccaaaatctacatagacagtaataacaacccggagagatttcttcgtgaaaatccctactatgacagtcgcgttgttggaaagtattgtgagaagagagatccacatctggcctgtgttgcttatgaacgtggccaatgtgatctggaacttattaatgtttgcaatgagaattccctcttcaaaagtctttctcgctacctggtacgtcgaaaggatccagaattgtggggcagcgtgctgctggaaagcaatccttacaggagacccctaattgaccaggttgtacaaacagctttgtctgagactcaggaccctgaagaagtgtcagtaactgtaaaggctttcatgactgcagaccttcctaatgaactcattgaactgctggagaaaattgtccttgataactctgtattcagtgaacacaggaatctgcaaaacctccttatcctcactgcaattaaggctgaccgtacacgtgttatggagtatattaaccgcctggataattatgatgccccagatattgccaatatcgccatcagcaatgagctgtttgaagaagcatttgccattttccggaaatttgatgtcaatacttcagcagttcaggtcttaattgagcatattggaaacttggatcgggcatatgagtttgctgaacgttgcaatgaacctgcggtctggagtcaacttgcaaaagcccagttgcagaaaggaatggtgaaagaagccattgattcttatatcaaagcagatgatccttcctcctacatggaagttgttcaggctgccaatactagtggaaactgggaagaactggtgaagtacttgcagatggcccgtaagaaggctcgagagtcctatgtggagacagaactgatattcgcactggctaaaacaaaccgccttgcagagttagaagaatttatcaatggaccaaataatgctcatatccaacaagttggtgaccgttgttatgatgaaaaaatgtatgatgctgctaagttgttgtacaataatgtttccaattttggacgtttggcatctaccctggttcacctgggtgaatatcaggcagctgttgatggggctaggaaagctaacagtactcgaacatggaaagaggtctgcttcgcctgtgtagatgggaaagaattccgtcttgctcagatgtgtggacttcatattgttgtacatgcagatgaattagaagaacttatcaactactatcaggatcgtggctattttgaagagctgatcaccatgttggaagcagcactgggacttgagcgagctcacatgggaatgtttactgaattagctattctatactctaaatttaagcctcagaaaatgagggagcacctggagctgttctggtctagagtgaatattcccaaggtgctaagagctgcagaacaagctcatctttgggcagaactggtgtttttgtatgacaagtatgaagaatatgataatgccataattaccatgatgaatcatccaactgatgcctggaaagaagggcaattcaaagatatcattaccaaggttgccaatgtggaactatactacagagcaatacagttctacttagaattcaagcctctgttgttaaatgatttgctgatggtgctgtctccacggttggatcacactcgtgcagtcaattatttcagcaaggttaaacagctaccactggtgaaaccgtatttgcgttcagttcagaaccataacaacaaatctgtgaatgaatcattgaacaatctttttattacagaagaagattatcaggctctgcgaacatcaatagatgcttatgacaactttgacaatatctcgcttgctcagcgtttggaaaaacatgaactcattgagttcaggagaattgctgcttatctcttcaaaggcaacaatcgctggaaacagagtgtagagctgtgcaagaaagacagcctttacaaggatgcaatgcagtatgcttctgaatctaaagatactgaattggctgaagaactcctgcagtggtttttgcaggaagaaaaaagagagtgctttggagcttgtctgtttacctgttacgatcttttaaggccagatgtcgtcctagaaactgcatggaggcacaatatcatggattttgccatgccctatttcatccaggtcatgaaggagtacttgacaaagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33031 CAD::KHK ENSG00000084774.14::ENSG00000138030.14 SCABER SRR8616099 SRR8670749 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2205 FALSE NA FALSE NA CAD ENSG00000084774.14 protein_coding + + chr2:27217369-27243943:+ chr2:27232694:+ chr2:27440237-27466811:+ chr2:27455562:+ KHK ENSG00000138030.14 protein_coding + + chr2:27086772-27100762:+ chr2:27097503:+ chr2:27309640-27323630:+ chr2:27320371:+ chr2:27233061 chr2:27097094 NA NA chr2:27455929 chr2:27319962 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CPSase_sm_chain|4-137|1.5e-51^MGS|100-114|6.7^GATase|180-355|2.5e-53^Peptidase_C26|246-279|4.2e-05^Peptidase_C26|304-338|0.02^MGS|412-434|4.5^CPSase_L_D2|514-717|1.7e-87^GARS_A|523-599|0.44^ATP-grasp_5|523-556|0.001^ATP-grasp|526-683|8.6e-11^Dala_Dala_lig_C|537-685|1.3e-12^Amidohydro_1|567-656|1.3^ATP-grasp_3|642-688|0.00032^ATPgrasp_Ter|648-714|9.2e-07^CPSase_L_D3|801-877|2.5e-29^GATase|959-1022|0.86^ATP-grasp_3|1046-1219|5.5e-05^CPSase_L_D2|1050-1247|2.6e-29^ATP-grasp_5|1050-1088|0.0044^GARS_A|1053-1219|6.1e-06^ATP-grasp|1057-1219|2.5e-14^Dala_Dala_lig_C|1060-1216|4.1e-09^Peptidase_C26|1105-1154|0.019^ATPgrasp_Ter|1133-1248|5.1e-08^MGS|1327-1427|3.3e-19^Amidohydro_1|1464-1522|6.7e-12^Amidohydro_1|1609-1688|3.5^OTCace_N|1924-2065|1.6e-48^Amidohydro_1|1930-1951|1.4^ATPgrasp_Ter|1949-1963|8.4^OTCace|2072-2220|2e-37 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.12Mb] 13 4 13 4 ONLY_REF_SPLICE YES_LDAS 0.1714 GT 1.8256 AG 1.7819 ENST00000264705.9 1-2892 ENST00000260599.11 418-897 chr2|+|[0]27217552-27217633[0]|[1]27217877-27218016[2]|[0]27221218-27221347[0]|[1]27222194-27222336[2]|[0]27222519-27222660[0]|[1]27222866-27223037[1]|[2]27223563-27223748[1]|[2]27223917-27224029[0]|[1]27224345-27224490[2]|[0]27224745-27224876[2]|[0]27225010-27225243[2]|[0]27225705-27225926[2]|[0]27226131-27226319[2]|[0]27226525-27226649[1]|[2]27226832-27226962[0]|[1]27231468-27231580[2]|[0]27231980-27232224[1]|[2]27232448-27232694[2]<==>chr2|+|[0]27097503-27097649[2]|[0]27099196-27099284[1]|[2]27099420-27099577[0]|[1]27099665-27099750[2] atggcggccctagtgttggaggacgggtcggtcctgcggggccagccctttggggccgccgtgtcgactgccggggaagtggtgtttcaaaccggcatggtcggctaccccgaggccctcactgatccctcctacaaggcacagatcttagtgctcacctatcctctgatcggcaactatggcatccccccagatgaaatggatgagttcggtctctgcaagtggtttgaatcctcgggcatccacgtagcagcactggtagtgggagagtgctgtcctactcccagccactggagtgccacccgcaccctgcatgagtggctgcagcagcatggcatccctggcttgcaaggagtagacactcgggagctgaccaagaagttgcgggaacaggggtctctgctggggaagctggtccagaatggaacagaaccttcatccctgccattcttggaccccaatgcccgccccctggtaccagaggtctccattaagactccacgggtattcaatacagggggtgcccctcggatccttgctttggactgtggcctcaagtataatcagatccgatgcctctgccagcgtggggctgaggtcactgtggtaccctgggaccatgcactagacagccaagagtatgagggtctcttcttaagtaatgggcctggtgaccctgcctcctatcccagtgtcgtatccacactgagccgtgttttatctgagcctaatccccgacctgtctttgggatctgcctgggacaccagctattggccttagccattggggccaagacttacaagatgagatatgggaaccgaggccataaccagccctgcttgttggtgggctctgggcgctgctttctgacatcccagaaccatgggtttgctgtggagacagactcactgccagcagactgggctcctctcttcaccaacgccaatgatggttccaatgaaggcattgtgcacaacagcttgcctttcttcagtgtccagtttcacccagagcaccaagctggcccttcagatatggaactgcttttcgatatctttctggaaactgtgaaagaggccacagctgggaaccctgggggccagacagttagagagcggctgactgagcgcctctgtccccctgggattcccactcccggctctggacttccaccaccacgaaaggttctgatcctgggctcagggggcctctccattggccaagctggagaatttgactactcgggctctcaggcaattaaggccctgaaggaggaaaacatccagacgttgctgatcaaccccaatattgccacagtgcagacctcccaggggctggccgacaaggtctattttcttcccataacacctcattatgtaacccaggtgatacgtaatgaacgccccgatggtgtgttactgacttttgggggccagactgctctgaactgtggtgtggagctgaccaaggccggggtgctggctcggtatggggtccgggtcctgggcacaccagtggagaccattgagctgaccgaggatcgacgggcctttgctgccagaatggcagagatcggagagcatgtggccccgagcgaggcagcaaattctcttgaacaggcccaggcagccgctgaacggctggggtaccctgtgctagtgcgtgcagcctttgccctgggtggcctgggctctggctttgcctctaacagggaggagctctctgctctcgtggccccagcttttgcccataccagccaagtgctagtagacaagtctctgaagggatggaaggagattgagtacgaggtggtgagagacgcctatggcaactgtgtcacggtgtgtaacatggagaacttggacccactgggcatccacactggtgagtccatagtggtggcccctagccagacactgaatgacagggagtatcagctcctgaggcagacagctatcaaggtgacccagcacctgggaattgttggggagtgcaatgtgcagtatgccttgaaccctgagtctgagcagtattacatcattgaagtgaatgccaggctctctcgcagctctgccctggccagtaaggccacaggttatccactggcttatgtggcagccaagctagcattgggcatccctttgcctgagctcaggaactctgtgacagggggtacagcagcctttgaacccagcgtggattattgtgtggtgaagattcctcgatgggaccttagcaagttcctgcgagtcagcacaaagattgggagctgcatgaagagcgttggtgaagtcatgggcattgggcgttcatttgaggaggccttccagaaggccctgcgcatggtggatgagaactgtgtgggctttgatcacacagtgaaaccagtcagcgatatggagttggagactccaacagataagcggatttttgtggtggcagctgctttgtgggctggttattcagtggaccgcctgtatgagctcacacgcatcgaccgctggttcctgcaccgaatgaagcgtatcatcgcacatgcccagctgctagaacaacaccgtggacagcctttgccgccagacctgctgcaacaggccaagtgtcttggcttctcagacaaacagattgcccttgcagttctgagcacagagctggctgttcgcaagctgcgtcaggaactggggatctgtccagcagtgaaacagattgacacagttgcagctgagtggccagcccagacaaattacctatacctaacgtattggggcaccacccatgacctcacctttcgaacacctcatgtcctagtccttggctctggcgtctaccgtattggctctagcgttgaatttgactggtgtgctgtaggctgcatccagcagctccgaaagGGCCGGAACGCATCGGAGCAGGTGAAGATGCTGCAGCGGATAGACGCACACAACACCAGGCAGCCTCCAGAGCAGAAGATCCGGGTGTCCGTGGAGGTGGAGAAGCCACGAGAGGAGCTCTTCCAGCTGTTTGGCTACGGAGACGTGGTGTTTGTCAGCAAAGATGTGGCCAAGCACTTGGGGTTCCAGTCAGCAGAGGAAGCCTTGAGGGGCTTGTATGGTCGTGTGAGGAAAGGGGCTGTGCTTGTCTGTGCCTGGGCTGAGGAGGGCGCCGACGCCCTGGGCCCTGATGGCAAATTGCTCCACTCGGATGCTTTCCCGCCACCCCGCGTGGTGGATACACTGGGAGCTGGAGACACCTTCAATGCCTCCGTCATCTTCAGCCTCTCCCAGGGGAGGAGCGTGCAGGAAGCACTGAGATTCGGGTGCCAGGTGGCCGGCAAGAAGTGTGGCCTGCAGGGCTTTGATGGCATCGTGTGA MAALVLEDGSVLRGQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYKAQILVLTYPLIGNYGIPPDEMDEFGLCKWFESSGIHVAALVVGECCPTPSHWSATRTLHEWLQQHGIPGLQGVDTRELTKKLREQGSLLGKLVQNGTEPSSLPFLDPNARPLVPEVSIKTPRVFNTGGAPRILALDCGLKYNQIRCLCQRGAEVTVVPWDHALDSQEYEGLFLSNGPGDPASYPSVVSTLSRVLSEPNPRPVFGICLGHQLLALAIGAKTYKMRYGNRGHNQPCLLVGSGRCFLTSQNHGFAVETDSLPADWAPLFTNANDGSNEGIVHNSLPFFSVQFHPEHQAGPSDMELLFDIFLETVKEATAGNPGGQTVRERLTERLCPPGIPTPGSGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLLTFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEAANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHTSQVLVDKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQTAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNARLSRSSALASKATGYPLAYVAAKLALGIPLPELRNSVTGGTAAFEPSVDYCVVKIPRWDLSKFLRVSTKIGSCMKSVGEVMGIGRSFEEAFQKALRMVDENCVGFDHTVKPVSDMELETPTDKRIFVVAAALWAGYSVDRLYELTRIDRWFLHRMKRIIAHAQLLEQHRGQPLPPDLLQQAKCLGFSDKQIALAVLSTELAVRKLRQELGICPAVKQIDTVAAEWPAQTNYLYLTYWGTTHDLTFRTPHVLVLGSGVYRIGSSVEFDWCAVGCIQQLRKGRNASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPREELFQLFGYGDVVFVSKDVAKHLGFQSAEEALRGLYGRVRKGAVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASVIFSLSQGRSVQEALRFGCQVAGKKCGLQGFDGIV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33036 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2207 FALSE NA FALSE NA RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59893325:+ chr17:57970407-58027935:+ chr17:57970686:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59764971:+ chr17:57784553-57919616:+ chr17:57842332:+ chr17:59901202,chr17:59901366 chr17:59743517,chr17:59743514 NA NA chr17:57978563,chr17:57978727 chr17:57820878,chr17:57820875 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2-PARTIAL|90-141~|0.015^Pkinase-PARTIAL|91-141~|2.5e-74^PK_Tyr_Ser-Thr-PARTIAL|92-141~|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64 DUF6709-PARTIAL|~415-416|8.6e-07^DUF6766-PARTIAL|~415-417|4.6e-05 ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 646 222 646 222 ONLY_REF_SPLICE YES_LDAS 9.3661 GT 1.3753 AG 1.9656 ENST00000406116.7 1-141 ENST00000591877.2 415-1260 chr17|+|[0]59893185-59893325[2]<==>chr17|+|[0]59764971-59765138[2]|[0]59773754-59773885[2]|[0]59808796-59808876[2]|[0]59811670-59811786[2]|[0]59817712-59817773[1]|[2]59834012-59834050[1]|[2]59838295-59838397[2]|[0]59839768-59839911[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggGGTCCACATATAGCCTCAGTTACATTAGCTGCTTATGAATGCAATTCAGTTAATTTTCCCGAACCACCCTATCCTGATCAGATTATTTGTCCAGATGAAGAGGGCACTGAAGGAACCATTTCTTTGTGGAGTATCATCTCAAAAGTTAGGATTGAAGCCTGCATGTGGGGTATCGGTACAGCAATCGGAGAGCTGCCTCCATATTTCATGGCCAGAGCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAGATGCTGGAACATGCAGAGTCTGCACAAGACTTTGCCTCCCGGGCCAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATTTTTTGGAATTTTGGCCTGTGCTTCAATTCCAAATCCTTTATTTGATCTGGCTGGAATAACGTGTGGACACTTTCTGGTACCTTTTTGGACCTTCTTTGGTGCAACCCTAATTGGAAAAGCAATAATAAAAATGCATATCCAGAAAATTTTTGTTATAATAACATTCAGCAAGCACATAGTGGAGCAAATGGTGGCTTTCATTGGGCTGGAGGACAATGGCGCACTGCAACCTCCACCTCCCAGTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGPHIASVTLAAYECNSVNFPEPPYPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAEPDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGLEDNGALQPPPPSAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN exact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 TRUE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|TRUE,FALSE|FALSE,TRUE|FALSE|FALSE,FALSE|FALSE|TRUE,TRUE|FALSE,TRUE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,TRUE|FALSE|TRUE,TRUE|TRUE,TRUE|TRUE,TRUE,TRUE|FALSE,TRUE|FALSE|TRUE,TRUE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|FALSE|TRUE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,TRUE|TRUE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33040 PCBP1-AS1::LINC01816 ENSG00000179818.17::ENSG00000231327.3 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2209 TRUE 4044 TRUE 1523 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70085547:- chr2:70187236-70330352:- chr2:70312679:- LINC01816 ENSG00000231327.3 lncRNA - - chr2:70124034-70132923:- chr2:70124425:- chr2:70351166-70360055:- chr2:70351557:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 20 13 20 7.65 ONLY_REF_SPLICE YES_LDAS 0.2983 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33050 PCBP1-AS1::LINC01816 ENSG00000179818.17::ENSG00000231327.3 SBC5 SRR8616102 SRR8670750 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2210 TRUE 4044 TRUE 1523 PCBP1-AS1 ENSG00000179818.17 lncRNA - - chr2:69960104-70103220:- chr2:70059643:- chr2:70187236-70330352:- chr2:70286775:- LINC01816 ENSG00000231327.3 lncRNA - - chr2:70124034-70132923:- chr2:70124425:- chr2:70351166-70360055:- chr2:70351557:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 10 15 10 6.38 ONLY_REF_SPLICE YES_LDAS 0.1767 GT 1.7465 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33054 PCYT1A::RBFOX1 ENSG00000161217.12::ENSG00000078328.23 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2214 FALSE NA FALSE NA PCYT1A ENSG00000161217.12 protein_coding - - chr3:196214222-196287957:- chr3:196247367:- chr3:195941093-196014828:- chr3:195974238:- RBFOX1 ENSG00000078328.23 protein_coding + + chr16:5239802-7713340:+ chr16:6654603:+ chr16:5289803-7763342:+ chr16:6704604:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CTP_transf_like|80-208|1.7e-35^BRCA-2_OB3|227-269|6.1e-05^DUF1664|233-272|1.8e-05^CTP_transf_like|244-257|0.91^YtxH|247-283|7.1e-06^hNIFK_binding|342-367|3.3e-05 Fox-1_C-PARTIAL|~415-501|1.1e-47 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr16] 50 14 50 14 ONLY_REF_SPLICE YES_LDAS 0.8614 GT 1.7819 AG 1.8295 ENST00000431016.6 1-486 ENST00000641259.1 415-1749 chr3|-|[2]196247367-196247518[1]|[0]196248207-196248323[1]|[0]196257788-196257887[0]|[2]196270415-196270531[0]<==>chr16|+|[0]6654603-6654650[2]|[0]7052057-7052098[2]|[0]7518147-7518389[2]|[0]7579777-7579920[2]|[0]7587247-7587300[2]|[0]7595549-7595641[2]|[0]7597371-7597431[0]|[1]7607285-7607338[0]|[1]7630603-7630683[0]|[1]7653815-7653947[1]|[2]7664929-7664968[2]|[0]7676774-7676838[1]|[2]7693315-7693367[0]|[1]7709056-7709131[1]|[2]7709494-7709641[2] atggatgcacagtgttcagccaaggtcaatgcaaggaagaggagaaaagaggcgcccggacccaacggggcaacagaagaagatggggttccttccaaagtgcagcgctgtgcagtgggcttacggcaaccagctcctttttctgatgaaattgaagttgactttagtaagccctatgtcagggtaactatggaagaagccagcagaggaactccttgtgagcgacctgtgagagtttatgccgatggaatatttgacttatttcactctggtcacgcccgagctctgatgcaagcgaagaaccttttccctaatacgtacctcattgtgggagtttgcagtgatgagctcacacacaacttcaaaggcttcacggtgatgaacgagaatgagcgctatgacgcagtccagcactgccgctacgtggatgaggtggtgaggaatgcgccctggacgctgacacccgagttcctggccgaacaccggGATATCAAAGCAGACTGCAATACCTGCGTGGAAATAGAAGACAGAAAGGTTTCAAGACAACAGATGAATTGTGAAAGAGAGCAGCTAAGGGGTAATCAGGAAGCAGCCGCTGCCCCTGACACAATGGCTCAGCCTTACGCTTCGGCCCAGTTTGCTCCCCCGCAGAACGGTATCCCCGCGGAATACACGGCCCCTCATCCCCACCCCGCGCCAGAGTACACAGGCCAGACCACGGTTCCCGAGCACACATTAAACCTGTACCCTCCCGCCCAGACGCACTCCGAGCAGAGCCCGGCGGACACGAGCGCTCAGACCGTCTCTGGCACCGCCACACAGACAGATGACGCAGCACCGACGGATGGCCAGCCCCAGACACAACCTTCTGAAAACACGGAAAACAAGTCTCAGCCCAAGCGGCTGCATGTCTCCAATATCCCCTTCAGGTTCCGGGATCCGGACCTCAGACAAATGTTTGGTCAATTTGGTAAAATCTTAGATGTTGAAATTATTTTTAATGAGCGAGGCTCAAAGGGATTTGGTTTCGTAACTTTCGAAAATAGTGCCGATGCGGACAGGGCGAGGGAGAAATTACACGGCACCGTGGTAGAGGGCCGTAAAATCGAGGTAAATAATGCCACAGCACGTGTAATGACAAATAAAAAGACCGTCAACCCTTATACAAATGGCTGGAAATTGAATCCAGTTGTGGGTGCAGTCTACAGTCCCGAATTCTATGCAGGCACGGTCCTGTTGTGCCAGGCCAACCAGGAGGGATCTTCCATGTACAGTGCCCCCAGTTCACTTGTATATACTTCTGCAATGCCAGGCTTCCCGTATCCAGCAGCCACCGCCGCGGCCGCCTACCGAGGGGCGCACCTGCGAGGCCGCGGTCGCACCGTGTACAACACCTTCAGGGCCGCGGCGCCCCCGCCCCCGATCCCGGCCTACGGCGGTGTTGTTTACCAGGATGGATTTTATGGTGCAGACATTTATGGTGGTTATGCTGCATACCGCTACGCCCAGCCTACCCCTGCCACTGCCGCTGCCTACAGTGACAGAAATCAGTTCGTCTTCGTTGCAGCAGATGAAATTTCTTGTAACACCTCTGCAGTTACGGACGAGTTTATGCTGCCGACCCCTACCACCACGCACTTGCTCCAGCCCCCACCTACGGCGTTGGTGCCATGCCCCAAGGTTCCAGCCCCAGCACAGACTTCAGAGGAGCTAAGCTGCACACTTCCAGGCCTCTGCTGTCAGGCAGCTGAGAATCTGACTGCCTCTCCTCCCCTATTACAATTCATGTTTAAAGTCATAGTCGCCCAGGAAAGAAAATAG MDAQCSAKVNARKRRKEAPGPNGATEEDGVPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVRVTMEEASRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRDIKADCNTCVEIEDRKVSRQQMNCEREQLRGNQEAAAAPDTMAQPYASAQFAPPQNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSSLVYTSAMPGFPYPAATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGGVVYQDGFYGADIYGGYAAYRYAQPTPATAAAYSDRNQFVFVAADEISCNTSAVTDEFMLPTPTTTHLLQPPPTALVPCPKVPAPAQTSEELSCTLPGLCCQAAENLTASPPLLQFMFKVIVAQERK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33055 CACNA2D1::SEMA3E ENSG00000153956.17::ENSG00000170381.15 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2216 FALSE NA FALSE NA CACNA2D1 ENSG00000153956.17 protein_coding - - chr7:81946444-82443956:- chr7:82335135:- chr7:81575760-82073272:- chr7:81964451:- SEMA3E ENSG00000170381.15 protein_coding - - chr7:83363238-83649139:- chr7:83469302:- chr7:82992554-83278455:- chr7:83098618:- chr7:82271740 chr7:83482590 NA NA chr7:81901056 chr7:83111906 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame dCache_1|30-58|1.7^VWA_N|104-223|2.9e-45^dCache_1|210-256|0.051^VWA-PARTIAL|253-294~|1.5e-19^VWA_3-PARTIAL|253-294~|2.6e-16^VWA_2-PARTIAL|254-294~|1.3e-12^IFN-gamma-PARTIAL|276-294~|9.4e-05 Sema|309-498|5.9e-66^PSI|518-547|1.4e-06^ig|589-667|4.8e-14^Ig_3|594-655|0.00011^Ig_6|598-677|3.1e-08^Ig_2|598-671|0.00012^V-set|614-672|7.4e-07^V-set|692-712|2 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.92Mb] 43 13 43 13 ONLY_REF_SPLICE YES_LDAS 0.7538 GT 1.9899 AG 1.9899 ENST00000443883.2 1-294 ENST00000643230.2 277-2328 chr7|-|[2]82335135-82335251[0]|[2]82349568-82349649[2]|[1]82443365-82443459[0]<==>chr7|-|[2]83367586-83368038[0]|[2]83385294-83385433[1]|[0]83386983-83387050[2]|[1]83392555-83392721[0]|[2]83394297-83394338[0]|[2]83396638-83396729[1]|[0]83400028-83400250[0]|[2]83402632-83402776[2]|[1]83405450-83405519[1]|[0]83405945-83406059[0]|[2]83407097-83407239[1]|[0]83408368-83408487[1]|[0]83418390-83418483[0]|[2]83466482-83466601[0]|[2]83469243-83469302[0] atggctgctggctgcctgctggccttgactctgacacttttccaatctttgctcatcggcccctcgtcggaggagccgttcccttcggccgtcactatcaaatcatgggtggataagatgcaagaagaccttgtcacactggcaaaaacagcaagtggagtcaatcagcttgttgatatttatgagaaatatcaagatttgtatactgtggaaccaaataatgcacgccagctggtagaaattgcagccagggatattgagaaacttctgagcaacagatctaaagccctggtgATACACTGGCCGAGTACAGCTCTAAAAATGGAAGAATGCATAATGAAGGGAAAAGATGCGGGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGGACACACCTTCTGACCTGTGGTACTGGAGCTTTTGATCCAGTTTGTGCCTTCATCAGAGTTGGATATCATTTGGAGGATCCTCTGTTTCACCTGGAATCACCCAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAGCTCCTCCTTCATCTCCACTTTAATTGGTAGTGAATTGTTTGCTGGACTCTACAGTGACTACTGGAGCAGAGACGCTGCGATCTTCCGCAGCATGGGGCGACTGGCCCATATCCGCACTGAGCATGACGATGAGCGTCTGTTGAAAGAACCAAAATTTGTAGGTTCATACATGATTCCTGACAATGAAGACAGAGATGACAACAAAGTATATTTCTTTTTTACTGAGAAGGCACTGGAGGCAGAAAACAATGCTCACGCAATTTACACCAGGGTCGGGCGACTCTGTGTGAATGATGTAGGAGGGCAGAGAATACTGGTGAATAAGTGGAGCACTTTCCTAAAAGCGAGACTCGTTTGCTCAGTACCAGGAATGAATGGAATTGACACATATTTTGATGAATTAGAGGACGTTTTTTTGCTACCTACCAGAGATCATAAGAATCCAGTGATATTTGGACTCTTTAACACTACCAGTAATATTTTTCGAGGGCATGCTATATGTGTCTATCACATGTCTAGCATTCGGGCAGCCTTCAACGGACCATATGCACATAAGGAAGGACCTGAATACCACTGGTCAGTCTATGAAGGAAAAGTCCCTTATCCAAGGCCTGGTTCTTGTGCCAGCAAAGTAAATGGAGGGAGATACGGAACCACCAAGGACTATCCTGATGATGCCATCCGATTTGCAAGAAGTCATCCACTAATGTACCAGGCCATAAAACCTGCCCATAAAAAACCAATATTGGTAAAAACAGATGGAAAATATAACCTGAAACAAATAGCAGTAGATCGAGTGGAAGCTGAGGATGGCCAATATGACGTCTTGTTTATTGGGACAGATAATGGAATTGTGCTGAAAGTAATCACAATTTACAACCAAGAAATGGAATCAATGGAAGAAGTAATTCTAGAAGAACTTCAGATATTCAAGGATCCAGTTCCTATTATTTCTATGGAGATTTCTTCAAAGCGGCAACAGCTGTATATTGGATCTGCTTCTGCTGTGGCTCAAGTCAGATTCCATCACTGTGACATGTATGGAAGTGCTTGTGCTGACTGCTGCCTGGCTCGAGACCCTTACTGTGCCTGGGATGGCATATCCTGCTCCCGGTATTACCCAACAGGCACACATGCAAAAAGGCGTTTCCGGAGACAAGATGTTCGACATGGAAATGCAGCTCAGCAGTGCTTTGGACAACAGTTTGTTGGGGATGCTTTGGATAAGACTGAAGAACATCTGGCTTATGGCATAGAGAACAACAGTACTTTGCTGGAATGTACCCCACGATCTTTACAAGCGAAAGTTATCTGGTTTGTACAGAAAGGACGTGAGACAAGAAAAGAGGAGGTGAAGACAGATGACAGAGTGGTTAAGATGGACCTTGGTTTACTCTTCCTAAGGTTACACAAATCAGATGCTGGGACCTATTTTTGCCAGACAGTAGAGCATAGCTTTGTCCATACGGTCCGTAAAATCACCTTGGAGGTAGTGGAAGAGGAGAAAGTCGAGGATATGTTTAACAAGGACGATGAGGAGGACAGGCATCACAGGATGCCTTGTCCTGCTCAGAGTAGCATCTCGCAGGGAGCAAAACCATGGTACAAGGAATTCTTGCAGCTGATCGGTTATAGCAACTTCCAGAGAGTGGAAGAATACTGCGAGAAAGTATGGTGCACAGATAGAAAGAGGAAAAAGCTTAAAATGTCACCCTCCAAGTGGAAGTATGCCAACCCTCAGGAAAAGAAGCTCCGTTCCAAACCTGAGCATTACCGCCTGCCCAGGCACACGCTGGACTCCTGA MAAGCLLALTLTLFQSLLIGPSSEEPFPSAVTIKSWVDKMQEDLVTLAKTASGVNQLVDIYEKYQDLYTVEPNNARQLVEIAARDIEKLLSNRSKALVIHWPSTALKMEECIMKGKDAGECANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRVGYHLEDPLFHLESPRSERGRGRCPFDPSSSFISTLIGSELFAGLYSDYWSRDAAIFRSMGRLAHIRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKVYFFFTEKALEAENNAHAIYTRVGRLCVNDVGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDELEDVFLLPTRDHKNPVIFGLFNTTSNIFRGHAICVYHMSSIRAAFNGPYAHKEGPEYHWSVYEGKVPYPRPGSCASKVNGGRYGTTKDYPDDAIRFARSHPLMYQAIKPAHKKPILVKTDGKYNLKQIAVDRVEAEDGQYDVLFIGTDNGIVLKVITIYNQEMESMEEVILEELQIFKDPVPIISMEISSKRQQLYIGSASAVAQVRFHHCDMYGSACADCCLARDPYCAWDGISCSRYYPTGTHAKRRFRRQDVRHGNAAQQCFGQQFVGDALDKTEEHLAYGIENNSTLLECTPRSLQAKVIWFVQKGRETRKEEVKTDDRVVKMDLGLLFLRLHKSDAGTYFCQTVEHSFVHTVRKITLEVVEEEKVEDMFNKDDEEDRHHRMPCPAQSSISQGAKPWYKEFLQLIGYSNFQRVEEYCEKVWCTDRKRKKLKMSPSKWKYANPQEKKLRSKPEHYRLPRHTLDS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33063 PANX2::MOV10L1 ENSG00000073150.14::ENSG00000073146.17 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2222 FALSE NA FALSE NA PANX2 ENSG00000073150.14 protein_coding + + chr22:50170731-50180295:+ chr22:50170956:+ chr22:50609160-50618724:+ chr22:50609385:+ MOV10L1 ENSG00000073146.17 protein_coding + + chr22:50090006-50161690:+ chr22:50153045:+ chr22:50528435-50600119:+ chr22:50591474:+ chr22:50178371,chr22:50178370 chr22:50151468,chr22:50151464 NA NA chr22:50616800,chr22:50616799 chr22:50589897,chr22:50589893 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Innexin-PARTIAL|51-226~|3.6e-14 AAA_12-PARTIAL|~274-276|1.6e-48 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.01Mb];LOCAL_REARRANGEMENT:+:[9041] 16 5 16 5 ONLY_REF_SPLICE YES_LDAS 0.2826 GT 1.9086 AG 1.9656 ENST00000159647.9 1-226 ENST00000395852.5 274-1017 chr22|+|[0]50170731-50170956[0]<==>chr22|+|[0]50153045-50153218[2]|[0]50158057-50158206[2]|[0]50159678-50159785[2]|[0]50160688-50160825[2]|[0]50160964-50161055[1]|[2]50161368-50161449[2] atgcaccacctcctggagcagtcggcggacatggcgaccgcgctgctggcgggagagaagctgcgggagctgatcctgccgggcgcgcaggacgacaaggcgggcgcgctggccgcgctgcttctgcagctgaagctggagctgccgttcgaccgggtggtcaccatcggcaccgtgctggtgcccatcctgctggtcaccctggtcttcaccaagaacttcgcagGTCACAAAGCTGGTGAAGAACTACCGGTCCCACGAGGCCCTGCTGATGCTGCCCTCACGGCTGTTCTACCACAGGGAACTCGAGGTCTGTGCGGACCCCACAGTGGTGACCTCCTTGCTGGGCTGGGAGAAGTTGCCTAAGAAAGGCTTCCCTCTCATCTTCCATGGTGTGCGGGGCAGCGAGGCACGGGAGGGAAAAAGCCCATCGTGGTTCAACCCGGCCGAGGCCGTCCAGGTCCTGCGCTACTGCTGCCTCCTGGCCCACAGCATCTCCAGTCAGGTGTCTGCCAGCGACATTGGCGTCATCACGCCCTACCGGAAGCAGGTGGAGAAAATCAGAATTCTTTTGCGTAATGTTGATCTGATGGATATAAAGGTTGGATCAGTAGAGGAGTTTCAAGGACAAGAGTATCTGGTCATCATCATTTCGACCGTACGGTCAAATGAAGATAGATTTGAAGATGATCGATATTTTTTGGGTTTCTTGTCCAACTCAAAAAGATTTAATGTTGCAATCACCAGACCCAAAGCTTTGCTGATAGTGCTGGGAAACCCCCATGTTCTCGTTCGAGACCCCTGTTTTGGTGCTTTGCTGGAATACAGTATTACAAACGGTGTTTACATGGGATGCGATTTACCTCCTGCACTGCAGTCTCTGCAAAACTGTGGCGAGGGGGTGGCAGACCCCTCCTACCCAGTGGTGCCAGAATCCACAGGACCAGAGAAGCATCAGGAGCCCAGCTGA MHHLLEQSADMATALLAGEKLRELILPGAQDDKAGALAALLLQLKLELPFDRVVTIGTVLVPILLVTLVFTKNFAGHKAGEELPVPRGPADAALTAVLPQGTRGLCGPHSGDLLAGLGEVA*ERLPSHLPWCAGQRGTGGKKPIVVQPGRGRPGPALLLPPGPQHLQSGVCQRHWRHHALPEAGGENQNSFA*C*SDGYKGWISRGVSRTRVSGHHHFDRTVK*R*I*R*SIFFGFLVQLKKI*CCNHQTQSFADSAGKPPCSRSRPLFWCFAGIQYYKRCLHGMRFTSCTAVSAKLWRGGGRPLLPSGARIHRTREASGAQL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33065 BRAF::ENSG00000228697 ENSG00000157764.14::ENSG00000228697.6 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BRAF ENSG00000157764.14 protein_coding - - chr7:140719327-140924929:- chr7:140794308:- chr7:140419127-140624729:- chr7:140494108:- ENSG00000228697 ENSG00000228697.6 lncRNA - - chr1:168400829-168495692:- chr1:168407318:- chr1:168370067-168464930:- chr1:168376556:- chr7:140787979,chr7:140787981 chr1:168410682,chr1:168410681 NA NA chr7:140487779,chr7:140487781 chr1:168379920,chr1:168379919 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BRAF:Oncogene","BRAF:FoundationOne_panel","BRAF:ArcherDX_panel","BRAF:OncocartaV1_panel","BRAF:OncomapV4_panel"] 12 13 12 11.96 ONLY_REF_SPLICE YES_LDAS 0.3225 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase B-raf TKL RAF P15056 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE v-raf murine sarcoma viral oncogene homolog B1 1 Yes melanoma, colorectal, papillary thyroid, borderline ovarian, NSCLC, cholangiocarcinoma, pilocytic astrocytoma, Spitzoid tumour, pancreas acinar carcinoma, melanocytic nevus, prostate, gastric epithelial, other oncogene, fusion missense, translocation, other FALSE NA NA NA NA NA NA NA NA NA 33067 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2221 TRUE 4070 TRUE 1532 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19751271:- chr13:20248892-20357159:- chr13:20325411:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19837821:- chr13:20397622-20437789:- chr13:20411961:- chr13:19749331,chr13:19749333 chr13:19847113,chr13:19847112 NA NA chr13:20323471,chr13:20323473 chr13:20421253,chr13:20421252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RRM_7|82-107|1.2e-06^RRM_1|84-148|2.2e-19^RRM_1|158-216|3.8e-18^RRM_7|166-182|0.22^NOPS|229-280|2.5e-32^Aldedh|280-366|0.00086^NOPS|380-393|0.47 none ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.04Mb];LOCAL_REARRANGEMENT:-:[40463] 11 9 11 4.31 ONLY_REF_SPLICE YES_LDAS 0.2061 GT 1.9086 AG 1.8295 ENST00000619300.4 1-967 ENST00000382907.8 587-627 chr13|-|[0]19751271-19751467[2]|[1]19759323-19759418[2]|[1]19772242-19772543[0]|[2]19782386-19782757[0]<==>chr13|-|[2]19837781-19837821[1] atgatgttaagaggaaacctgaagcaagtgcgcattgagaaaaacccggcccgccttcgcgccctggagtccgcggtgggcgagagcgagccggcggccgcggcagccatggcgctcgctcttgccggggagccggcaccgcccgcgcccgcgcctccagaggaccacccggacgaggagatggggttcactatcgacatcaagagtttcctcaagccgggcgagaagacgtacacgcagcgctgccgcctcttcgtgggaaatctgcccaccgacatcacggaggaggacttcaagaggctcttcgaacgctatggcgagcccagcgaagtcttcatcaaccgggaccgtggcttcggcttcatccgcttggaatccagaaccctggctgaaattgcaaaagcagagctggacggcaccattctcaagagcagacctctacggattcgcttcgctacacatggagcagccttgactgtcaagaacctttctccagttgtttccaatgagctgctagagcaagcattttctcagtttggtccagtagagaaagctgttgtggttgtggatgatcgcggtagagctacaggaaaaggttttgtagagtttgcagcaaaacctcctgcacgaaaggctctggaaagatgtggtgatggggcattcttgctaacaacgacccctcgtccagtcattgtggaacccatggagcagtttgatgatgaagatggcttgccagagaagctgatgcagaaaactcaacaatatcataaggaaagagaacaaccaccacgttttgctcaacctgggacatttgaatttgagtatgcatctcgatggaaggctcttgatgaaatggaaaagcagcagcgtgagcaggttgatagaaacatcagagaagccaaagagaaactggaggcagaaatggaagcagctaggcatgaacaccaattaatgctaatgaggcaagAGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAG MMLRGNLKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQEMHLQRRLMSFFQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33069 ROCK2::LINC00276 ENSG00000134318.16::ENSG00000230448.5 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ROCK2 ENSG00000134318.16 protein_coding - - chr2:11179759-11348330:- chr2:11286539:- chr2:11319885-11488456:- chr2:11426665:- LINC00276 ENSG00000230448.5 lncRNA - - chr2:13710531-14400963:- chr2:14317103:- chr2:13850656-14541087:- chr2:14457227:- chr2:11277719,chr2:11277721 chr2:14334170,chr2:14334169 NA NA chr2:11417845,chr2:11417847 chr2:14474294,chr2:14474293 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:2.36Mb] 9 3 9 3 ONLY_REF_SPLICE YES_LDAS 0.1615 GT 1.7465 AG 1.4295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Rho-associated protein kinase 2 AGC DMPK ROCK O75116 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33070 PPP2CB::TEX15 ENSG00000104695.13::ENSG00000133863.9 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA PPP2CB ENSG00000104695.13 protein_coding - - chr8:30774457-30814314:- chr8:30786211:- chr8:30631973-30671830:- chr8:30643727:- TEX15 ENSG00000133863.9 protein_coding - - chr8:30831544-30913008:- chr8:30839964:- chr8:30689060-30770524:- chr8:30697480:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.02Mb];LOCAL_REARRANGEMENT:-:[17230] 8 1 8 1 ONLY_REF_SPLICE YES_LDAS 0.1212 GT 1.9899 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33072 PSPC1::ZMYM5 ENSG00000121390.19::ENSG00000132950.19 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2220 TRUE 4070 TRUE 1532 PSPC1 ENSG00000121390.19 protein_coding - - chr13:19674752-19783019:- chr13:19751271:- chr13:20248892-20357159:- chr13:20325411:- ZMYM5 ENSG00000132950.19 protein_coding - - chr13:19823482-19863649:- chr13:19838985:- chr13:20397622-20437789:- chr13:20413125:- chr13:19749331,chr13:19749333 chr13:19847113,chr13:19847112 NA NA chr13:20323471,chr13:20323473 chr13:20421253,chr13:20421252 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RRM_7|82-107|1.2e-06^RRM_1|84-148|2.2e-19^RRM_1|158-216|3.8e-18^RRM_7|166-182|0.22^NOPS|229-280|2.5e-32^Aldedh|280-366|0.00086^NOPS|380-393|0.47 zf-ribbon_3-PARTIAL|~587-594|0.097^zf-FCS|590-609|1.9^V-ATPase_H_C|601-626|1.3^FKBP_N|624-664|0.35 ["TumorFusionsNAR2018","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.04Mb];LOCAL_REARRANGEMENT:-:[40463] 8 12 8 7.31 ONLY_REF_SPLICE YES_LDAS 0.2061 GT 1.9086 AG 1.8323 ENST00000619300.4 1-967 ENST00000337963.9 587-2010 chr13|-|[0]19751271-19751467[2]|[1]19759323-19759418[2]|[1]19772242-19772543[0]|[2]19782386-19782757[0]<==>chr13|-|[2]19824477-19825235[0]|[2]19835477-19835689[0]|[2]19837656-19837821[2]|[1]19838700-19838985[1] atgatgttaagaggaaacctgaagcaagtgcgcattgagaaaaacccggcccgccttcgcgccctggagtccgcggtgggcgagagcgagccggcggccgcggcagccatggcgctcgctcttgccggggagccggcaccgcccgcgcccgcgcctccagaggaccacccggacgaggagatggggttcactatcgacatcaagagtttcctcaagccgggcgagaagacgtacacgcagcgctgccgcctcttcgtgggaaatctgcccaccgacatcacggaggaggacttcaagaggctcttcgaacgctatggcgagcccagcgaagtcttcatcaaccgggaccgtggcttcggcttcatccgcttggaatccagaaccctggctgaaattgcaaaagcagagctggacggcaccattctcaagagcagacctctacggattcgcttcgctacacatggagcagccttgactgtcaagaacctttctccagttgtttccaatgagctgctagagcaagcattttctcagtttggtccagtagagaaagctgttgtggttgtggatgatcgcggtagagctacaggaaaaggttttgtagagtttgcagcaaaacctcctgcacgaaaggctctggaaagatgtggtgatggggcattcttgctaacaacgacccctcgtccagtcattgtggaacccatggagcagtttgatgatgaagatggcttgccagagaagctgatgcagaaaactcaacaatatcataaggaaagagaacaaccaccacgttttgctcaacctgggacatttgaatttgagtatgcatctcgatggaaggctcttgatgaaatggaaaagcagcagcgtgagcaggttgatagaaacatcagagaagccaaagagaaactggaggcagaaatggaagcagctaggcatgaacaccaattaatgctaatgaggcaagATTCTTGGATCTCCCAGTCAGCTTCATTTCCCAGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTTACTTCGTAAGCAGAATTTCCAGCCTACAGCCCAACAACAACTTACTAAACCAGCTAAAATCACTTGTGCAAATTGCAAAAAGCCTTTACAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGCTCTACCACCTGCCTTTCTTCCTTCTCTCATAAACGTACTCAAAACACACGAAGCATAATATGTAAAAAAGATGCATCTACAAAGAAGGCTAATGTCATTCTTCCAGTAGAATCAAGCAAATCCTTCCAAGAATTTTATAGTACATCTTGTTTGTCTCCCTGTGAAAACAACTGGAATCTTAAAAAAGGAGTTTTTAATAAGTCAAGATGTACAATTTGTAGTAAATTAGCAGAGATTCGCCATGAAGTCAGCGTAAATAATGTAACACATAAACTGTGCAGTAACCATTGCTTTAATAAGTACAGATTGGCCAATGGTCTAATAATGAACTGCTGTGAACACTGTGGAGAGTACATGCCTAGTAAGAGTACTGGAAACAACATCCTGGTGATTGGAGGTCAGCAGAAGAGATTTTGCTGCCAAAGTTGTATTAACGAATATAAACAGATGATGGAAACAAAATCAAAAAAATTAACAGCATCAGAAAATAGAAAAAGGAATGCTTTTAGAGAAGAAAATGAGAAACAATTATATGGATCGTCAAATACACTTTTGAAAAAAATAGAGGGAATCCCAGAAAAAAAGGAAAAGACTTCACAGCTACAGCTTTCAGTAGAATGTGGCACGGATACATTACTGATCCAAGAGAATGTGAATTTACCTCCTTCTTCCACGTCAACCATAGCTGATACATTTCAAGAGCAACTGGAAGAGAAAAATTTTGAAGACTCCATTGTACCAGTTGTGCTTTCCGCAGATCCAGGTACGTGGCCCCGAATTTTGAATATTAAACAACGGGACACTCTTGTTGAAAATGTTCCGCCTCAAGTAAGAAATTTTAACTTTCCAAAAGATAATACAGGGAGGAAGTTTTCAGAAACTTATTATACACGGATTCTTCCAAATGGTGAAAAAACCACTAGATCCTGGTTACTTTATTCAACCTCAAAAGATTCTGTGTTTTGTCTATATTGCAAACTCTTTGGGGAAGGAAAAAATCAACTGAAAAATGAAAATGGGTGCAAAGATTGGCAACATTTATCACATATTCTTAGTAAACATGAAGAAAGTGAAATGCACGTCAACAATAGTGTTAAGTACTCAAAATTAAAATCTGATCTGAAAAAAAATAAAGCTATTGATGCTGCAGAACACAGATTATATGAAAATGAGAAAAATGATGGTGTGCTGTTGTTGTACACGTAA MMLRGNLKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDSWISQSASFPSNQKQPGVDSLSPVALLRKQNFQPTAQQQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTQNTRSIICKKDASTKKANVILPVESSKSFQEFYSTSCLSPCENNWNLKKGVFNKSRCTICSKLAEIRHEVSVNNVTHKLCSNHCFNKYRLANGLIMNCCEHCGEYMPSKSTGNNILVIGGQQKRFCCQSCINEYKQMMETKSKKLTASENRKRNAFREENEKQLYGSSNTLLKKIEGIPEKKEKTSQLQLSVECGTDTLLIQENVNLPPSSTSTIADTFQEQLEEKNFEDSIVPVVLSADPGTWPRILNIKQRDTLVENVPPQVRNFNFPKDNTGRKFSETYYTRILPNGEKTTRSWLLYSTSKDSVFCLYCKLFGEGKNQLKNENGCKDWQHLSHILSKHEESEMHVNNSVKYSKLKSDLKKNKAIDAAEHRLYENEKNDGVLLLYT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary no_match TRUE Breast invasive carcinoma BREAST no_match 20304379 FALSE 20409829 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33074 NBAS::ENSG00000225649 ENSG00000151779.14::ENSG00000225649.7 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15287073:- chr2:15307040-15701464:- chr2:15427197:- ENSG00000225649 ENSG00000225649.7 lncRNA - - chr2:12780593-13007029:- chr2:12784737:- chr2:12920719-13147154:- chr2:12924863:- chr2:15282599,chr2:15282599,chr2:15282602 chr2:12799578,chr2:12799575,chr2:12799580 NA NA chr2:15422723,chr2:15422723,chr2:15422726 chr2:12939704,chr2:12939701,chr2:12939706 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 8 7 8 ONLY_REF_SPLICE YES_LDAS 0.2019 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33075 ERGIC1::ADGRV1 ENSG00000113719.17::ENSG00000164199.18 LC1F SRR8616103 SRR8652092 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ERGIC1 ENSG00000113719.17 protein_coding + + chr5:172834251-172952792:+ chr5:172834433:+ chr5:172261254-172379795:+ chr5:172261436:+ ADGRV1 ENSG00000164199.18 protein_coding + + chr5:90529344-91164437:+ chr5:90985344:+ chr5:89825161-90460254:+ chr5:90281161:+ chr5:172884205,chr5:172884206 chr5:90970832,chr5:90970830 NA NA chr5:172311208,chr5:172311209 chr5:90266649,chr5:90266647 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ERGIC_N-PARTIAL|5-20~|8.8e-31 none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 6 2 6 1.5 ONLY_REF_SPLICE YES_LDAS 0.101 GT 1.9656 AG 1.7968 ENST00000689975.1 1-20 ENST00000425867.3 6928-7875 chr5|+|[0]172834414-172834433[1]<==>chr5|+|[0]90985344-90985522[1]|[2]91072447-91072604[0]|[1]91102219-91102340[2]|[0]91150030-91150221[2]|[0]91153221-91153398[0]|[1]91163782-91163900[2] atgccctttgacttcaggagTCTGTGAATTTCTGGTACGTGCTGGTGATGAATGATGAGCACACAGAGAGGCGATATCTGCTGTTTTTCCTTCTGAGTTGGGGACTACCAGCTTTTGTGGTGATTCTCCTCATAGTTATTTTGAAAGGAATCTATCATCAGAGCATGTCACAGATCTATGGACTCATTCATGGTGACCTGTGTTTTATTCCAAACGTCTATGCTGCTTTGTTCACTGCAGCTCTTGTTCCTTTGACGTGCCTCGTGGTGGTGTTCGTGGTGTTCATCCATGCCTACCAGGTGAAGCCACAGTGGAAAGCATATGATGATGTCTTCAGAGGAAGGACAAATGCTGCAGAAATTCCACTGATTTTATATCTCTTTGCTCTGATTTCCGTGACATGGCTTTGGGGAGGACTACACATGGCCTACAGACACTTCTGGATGTTGGTTCTCTTTGTCATTTTCAACAGTCTGCAGGGACTTTATGTTTTCATGGTTTATTTCATTTTACACAACCAAATGTGTTGCCCTATGAAGGCCAGTTACACTGTGGAAATGAATGGGCATCCTGGACCCAGCACAGCCTTTTTCACGCCCGGGAGTGGAATGCCTCCTGCTGGAGGGGAAATCAGCAAGTCCACCCAGAATCTCATCGGTGCTATGGAGGAGGTGCCACCTGACTGGGAGAGAGCATCCTTCCAACAGGGCAGTCAGGCCAGCCCTGATTTAAAGCCAAGTCCACAAAATGGAGCCACGTTCCCGTCCTCTGGAGGATATGGCCAGGGGTCACTGATAGCCGATGAGGAGTCCCAGGAGTTTGATGATTTAATATTTGCATTAAAAACTGGTGCTGGTCTCAGTGTCAGTGATAATGAATCTGGTCAAGGCAGCCAGGAGGGGGGCACCTTGACTGACTCCCAGATCGTGGAGCTCAGGAGGATACCCATCGCCGACACTCACCTGTAG MPFDFRSL*ISGTCW**MMSTQRGDICCFSF*VGDYQLLW*FSS*LF*KESIIRACHRSMDSFMVTCVLFQTSMLLCSLQLLFL*RASWWCSWCSSMPTR*SHSGKHMMMSSEEGQMLQKFH*FYISLL*FP*HGFGEDYTWPTDTSGCWFSLSFSTVCRDFMFSWFISFYTTKCVAL*RPVTLWK*MGILDPAQPFSRPGVECLLLEGKSASPPRISSVLWRRCHLTGREHPSNRAVRPALI*SQVHKMEPRSRPLEDMARGH**PMRSPRSLMI*YLH*KLVLVSVSVIMNLVKAARRGAP*LTPRSWSSGGYPSPTLTC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Skin no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33077 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2227 TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127939676:+ chr8:128806772-129199347:+ chr8:128951922:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:66.93Mb] 607 533 607 504.25 ONLY_REF_SPLICE YES_LDAS 17.5569 GT 1.8062 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33082 PVT1::CHD7 ENSG00000249859.14::ENSG00000171316.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2228 TRUE 4081 TRUE 1540 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127890998:+ chr8:128806772-129199347:+ chr8:128903244:+ CHD7 ENSG00000171316.14 protein_coding + + chr8:60678740-60868028:+ chr8:60794986:+ chr8:61591299-61780587:+ chr8:61707545:+ chr8:127941250,chr8:127941250,chr8:127941247,chr8:127941246,chr8:127941251,chr8:127941242 chr8:60782237,chr8:60782241,chr8:60782231,chr8:60782231,chr8:60782235,chr8:60782231 NA NA chr8:128953496,chr8:128953496,chr8:128953493,chr8:128953492,chr8:128953497,chr8:128953488 chr8:61694796,chr8:61694800,chr8:61694790,chr8:61694790,chr8:61694794,chr8:61694790 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:66.93Mb] 130 230 130 28.75 ONLY_REF_SPLICE YES_LDAS 2.5081 GT 1.8892 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33084 PVT1::SLC7A7 ENSG00000249859.14::ENSG00000155465.21 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 2231 TRUE 4082 FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SLC7A7 ENSG00000155465.21 protein_coding - - chr14:22773222-22829820:- chr14:22780051:- chr14:23242431-23299029:- chr14:23249260:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023"];INTERCHROMOSOMAL[chr8--chr14] 99 122 99 12.1 ONLY_REF_SPLICE YES_LDAS 1.7553 GT 1.8295 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33085 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2239 TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127398893:+ chr8:127568568-128431295:+ chr8:128411138:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","ChimerSeq"];INTRACHROMOSOMAL[chr8:0.77Mb] 78 72 78 62.4 ONLY_REF_SPLICE YES_LDAS 2.2182 GT 1.8295 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33086 CACNA1C::SPSB2 ENSG00000151067.23::ENSG00000111671.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2120430:+ chr12:2079938-2807116:+ chr12:2229596:+ SPSB2 ENSG00000111671.10 protein_coding - - chr12:6870935-6889358:- chr12:6877600:- chr12:6980099-6998522:- chr12:6986764:- chr12:2165248,chr12:2165248,chr12:2165247 chr12:6880271,chr12:6880270,chr12:6880272 NA NA chr12:2274414,chr12:2274414,chr12:2274413 chr12:6989435,chr12:6989434,chr12:6989436 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:4.17Mb] 76 56 76 56 ONLY_REF_SPLICE YES_LDAS 2.0855 GT 1.7819 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33087 PICALM::CCDC81 ENSG00000073921.18::ENSG00000149201.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2237 TRUE 4086 TRUE 1543 PICALM ENSG00000073921.18 protein_coding - - chr11:85957175-86069882:- chr11:85974708:- chr11:85668218-85780924:- chr11:85685751:- CCDC81 ENSG00000149201.10 protein_coding + + chr11:86374736-86423109:+ chr11:86395334:+ chr11:86085778-86134151:+ chr11:86106376:+ chr11:85959644,chr11:85959655 chr11:86391770,chr11:86391759 NA NA chr11:85670687,chr11:85670698 chr11:86102812,chr11:86102801 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ENTH|20-133|4.8e-21^ANTH|23-283|3.3e-85 CREPT-PARTIAL|~286-295|0.81^ParM_N|305-358|0.9^CREPT|334-406|0.0016^ParM_N|439-495|0.0023^CREPT|442-495|0.71 ["PICALM:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.30Mb] 57 47 57 36.2 ONLY_REF_SPLICE YES_LDAS 1.4725 GT 1.9086 AG 1.8892 ENST00000393346.8 1-1944 ENST00000354755.5 286-1689 chr11|-|[2]85974708-85974812[0]|[2]85976623-85976682[0]|[2]85981129-85981228[2]|[1]85981745-85981775[1]|[0]85981872-85982003[1]|[0]85983866-85983973[1]|[0]85990250-85990399[1]|[0]85996826-85996929[2]|[1]86000643-86000779[0]|[2]86001035-86001158[2]|[1]86003366-86003451[0]|[2]86007542-86007583[0]|[2]86011030-86011136[1]|[0]86012281-86012392[0]|[2]86014870-86014963[2]|[1]86022367-86022469[1]|[0]86026292-86026367[0]|[2]86031469-86031611[1]|[0]86068651-86068780[0]<==>chr11|+|[0]86395334-86395413[1]|[2]86397621-86397742[0]|[1]86400678-86400801[1]|[2]86407614-86407701[2]|[0]86408127-86408270[2]|[0]86409261-86409365[2]|[0]86412387-86412559[1]|[2]86414789-86414867[2]|[0]86415093-86415313[1]|[2]86419928-86420053[1]|[2]86422574-86422715[2] atgtccggccagagcctgacggaccgaatcactgccgcccagcacagtgtcaccggctctgccgtatccaagacagtatgcaaggccacgacccacgagatcatggggcccaagaaaaagcacctggactacttaattcagtgcacaaatgagatgaatgtgaacatcccacagttggcagacagtttatttgaaagaactactaatagtagttgggtggtggtcttcaaatctctcattacaactcatcatttgatggtgtatggaaatgagcgttttattcagtatttggcttcaagaaacacgttgtttaacttaagcaattttttggataaaagtggattgcaaggatatgacatgtctacatttattaggcggtatagtagatatttaaatgagaaagcagtttcatacagacaagttgcatttgatttcacaaaagtgaagagaggggctgatggagttatgagaacaatgaacacagaaaaactcctaaaaactgtaccaattattcagaatcagatggatgcacttcttgattttaatgttaatagcaatgaacttacaaatggggtaataaatgctgccttcatgctcctgttcaaagatgccattagactgtttgcagcatacaatgaaggaattattaatttgttggaaaaatattttgatatgaaaaagaaccaatgcaaagaaggtcttgacatctataagaagttcctaactaggatgacaagaatctcagagttcctcaaagttgcagagcaagttggaattgacagaggtgatataccagacctttcacaggcccctagcagtcttcttgatgctttggaacaacatttagcttccttggaaggaaagaaaatcaaagattctacagctgcaagcagggcaactacactttccaatgcagtgtcttccctggcaagcactggtctatctctgaccaaagtggatgaaagggaaaagcaggcagcattagaggaagaacaggcacgtttgaaagctttaaaggaacagcgcctaaaagaacttgcaaagaaacctcatacctctttaacaactgcagcctctcctgtatccacctcagcaggagggataatgactgcaccagccattgacatattttctacccctagttcttctaacagcacatcaaagctgcccaatgatctgcttgatttgcagcagccaacttttcacccatctgtacatcctatgtcaactgcttctcaggtagcaagtacatggggagatcctttctctgctactgtagatgctgttgatgatgccattccaagcttaaatcctttcctcacaaaaagtagtggtgatgttcacctttccatttcttcagatgtatctacttttactactaggacacctactcatgaaatgtttgttggattcactccttctccagttgcacagccacacccttcagctggccttaatgttgactttgaatctgtgtttggaaataaatctacaaatgttattgtagattctgggggctttgatgaactaggtggacttctcaaaccaacagtggcctctcagaaccagaaccttcctgttgccaaactcccacctagcaagttagtatctgatgacttggattcatctttagccaaccttgtgggcaatcttggcatcggaaatggaaccactaagaatgatgtaaattggagtcaaccaggtgaaaagaagttaactgggggatctaactggcaaccaaaggttgcaccaacaaccgcttggaatgctgcaacaatggcaccccctgtaatggcctatcctgctactacaccaacaggcatgataggatatggaattcctccacaaatgggaagtgttcctgtaatgacgcaaccaaccttaatatacagccagcctgtcatgagacctccaaacccctttggccctgtatcaggagcacagAGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGTGCTTGCGTTTCCAAGGATTGAGCTCAAGGAGATGGAAAACAAACTGCCTATGGAGACCCTTGTAGAAGAATGTGGAGAGAATAGAGAAAGGAAGTGCAAGTTAAAAGACCAGTCAGACAAAGAAGAAGGCACCAGAGATATCTCATCACCCAAAAGACTTCGAGATAGACAAGCTTTGTTCCCTGCCAAAGTGACAAATGTCAGCTTGCTGGAAAAGTTTGAACGAAGTGAGAGTGGTGGGAAGATTATGACCCCTGAAAGCTTATCATATCCAAGTTGTCTGAAACACGACAGTGAGATGAAGCCCCAAACATCTCCAGCTTGCCAGGATCATAACAAGGCAGGACAGGAAATGTGCTATGTATGTTTGCAACGAGCACAACGAAATTCCCTGTTGTACTACAGTGAGGAAAGGAGGAGAGAGATAGAAGATGAGAGACTCATACAGCAGTATCAGATGTTAAAGGATCAGGAGGCTCTCTTCAGACACCAGATGAAAAGTCTGGCTACTAGAGAACAGAATCAGAAAAATGCTGCCTATAATCTTGGAGTTGCTGAAGCTATAAGAAACCACAAGAATGAGAAACCGGAATTTTATAAATCCTTCCTATTTGACAAACGGCCACTCAGTCCTGCGCTTAATGCTCTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAATGGATAACAGACAGGAAAACGAAATAAAGCAAAGACAATACAGAGAGTTGATGGACCGCCTGGAACAAGTGCAACTCACAGAGGAACTTGCTGCGCAAAGAGCGAAATTTTTAAAAGATAAGATGGAAGAAACACAGTGTTACAAGAGAGCTTTGGATGCACAGATAAAGAACAAACCCTCTCGGCTGCCCCCCTTTGAGCCAGACTCCTCTGAGCCCATCTTTGGTAAGAATGAGGGTGAACTGATGGTGGAAAAGCAAAAGCGAGAACAAAATTACATGAAACACCAGCTGGAGGCAGCTGCTAACCACAAGAGGAAAGCCATCCTGCATCAACTAGTGGACCAGAGGCGGGATTTGCAAATGCTTCAGAGGACACAAAGAGAGCACTTGGCAGACAGAACCGCTGAGCTGGAGCGAGTAAATAGAGTCAACCAATGCTTACAGGAGGACTGGGAAAGGAGTGCTGCGATGAAGAAGCAGCGAGACCTGGAGGACAAGGCTTTTGAACGGGCTTCAGACAAGCTGTTTCTCCTAGACCAGTGTGAGAAGTATCGGCGCTGCAAGCAATGCCAGAGGCGCACCTCCAACGTGGGCGAGAGCAACCTGTGGCCCCTGAACAAGTTCCTGCCTGGCTCCCGGTTGCTTGTGTAA MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQARLKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLDLQQPTFHPSVHPMSTASQVASTWGDPFSATVDAVDDAIPSLNPFLTKSSGDVHLSISSDVSTFTTRTPTHEMFVGFTPSPVAQPHPSAGLNVDFESVFGNKSTNVIVDSGGFDELGGLLKPTVASQNQNLPVAKLPPSKLVSDDLDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQRPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEECGENRERKCKLKDQSDKEEGTRDISSPKRLRDRQALFPAKVTNVSLLEKFERSESGGKIMTPESLSYPSCLKHDSEMKPQTSPACQDHNKAGQEMCYVCLQRAQRNSLLYYSEERRREIEDERLIQQYQMLKDQEALFRHQMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQIKNKPSRLPPFEPDSSEPIFGKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRLLV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatidylinositol binding clathrin assembly protein (CALM) 1 Yes T-ALL, AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33089 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 2241 TRUE 4088 TRUE 1545 TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31742647:+ chr20:30327074-30389608:+ chr20:30330450:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31538179:+ chr20:30102231-30165726:+ chr20:30125982:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.16Mb] 36 45 36 42.97 ONLY_REF_SPLICE YES_LDAS 1.2477 GT 1.8892 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary exact TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 TRUE|TRUE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33092 PICALM::CCDC81 ENSG00000073921.18::ENSG00000149201.10 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2238 TRUE 4086 TRUE 1543 PICALM ENSG00000073921.18 protein_coding - - chr11:85957175-86069882:- chr11:85974708:- chr11:85668218-85780924:- chr11:85685751:- CCDC81 ENSG00000149201.10 protein_coding + + chr11:86374736-86423109:+ chr11:86392541:+ chr11:86085778-86134151:+ chr11:86103583:+ chr11:85959644,chr11:85959655 chr11:86391770,chr11:86391759 NA NA chr11:85670687,chr11:85670698 chr11:86102812,chr11:86102801 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ENTH|20-133|4.8e-21^ANTH|23-283|3.3e-85 CREPT|341-385|1.2^ParM_N|398-448|1.5^CREPT|424-496|0.0026^CREPT|489-585|0.67^ParM_N|529-584|0.0033 ["PICALM:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.30Mb] 13 51 13 14.8 ONLY_REF_SPLICE YES_LDAS 0.4392 GT 1.9086 AG 1.9656 ENST00000393346.8 1-1944 ENST00000445632.7 299-1959 chr11|-|[2]85974708-85974812[0]|[2]85976623-85976682[0]|[2]85981129-85981228[2]|[1]85981745-85981775[1]|[0]85981872-85982003[1]|[0]85983866-85983973[1]|[0]85990250-85990399[1]|[0]85996826-85996929[2]|[1]86000643-86000779[0]|[2]86001035-86001158[2]|[1]86003366-86003451[0]|[2]86007542-86007583[0]|[2]86011030-86011136[1]|[0]86012281-86012392[0]|[2]86014870-86014963[2]|[1]86022367-86022469[1]|[0]86026292-86026367[0]|[2]86031469-86031611[1]|[0]86068651-86068780[0]<==>chr11|+|[1]86392541-86392797[2]|[0]86395334-86395413[1]|[2]86397621-86397742[0]|[1]86400678-86400801[1]|[2]86407614-86407701[2]|[0]86408127-86408270[2]|[0]86409261-86409365[2]|[0]86412387-86412559[1]|[2]86414789-86414867[2]|[0]86415093-86415313[1]|[2]86419928-86420053[1]|[2]86422574-86422715[2] atgtccggccagagcctgacggaccgaatcactgccgcccagcacagtgtcaccggctctgccgtatccaagacagtatgcaaggccacgacccacgagatcatggggcccaagaaaaagcacctggactacttaattcagtgcacaaatgagatgaatgtgaacatcccacagttggcagacagtttatttgaaagaactactaatagtagttgggtggtggtcttcaaatctctcattacaactcatcatttgatggtgtatggaaatgagcgttttattcagtatttggcttcaagaaacacgttgtttaacttaagcaattttttggataaaagtggattgcaaggatatgacatgtctacatttattaggcggtatagtagatatttaaatgagaaagcagtttcatacagacaagttgcatttgatttcacaaaagtgaagagaggggctgatggagttatgagaacaatgaacacagaaaaactcctaaaaactgtaccaattattcagaatcagatggatgcacttcttgattttaatgttaatagcaatgaacttacaaatggggtaataaatgctgccttcatgctcctgttcaaagatgccattagactgtttgcagcatacaatgaaggaattattaatttgttggaaaaatattttgatatgaaaaagaaccaatgcaaagaaggtcttgacatctataagaagttcctaactaggatgacaagaatctcagagttcctcaaagttgcagagcaagttggaattgacagaggtgatataccagacctttcacaggcccctagcagtcttcttgatgctttggaacaacatttagcttccttggaaggaaagaaaatcaaagattctacagctgcaagcagggcaactacactttccaatgcagtgtcttccctggcaagcactggtctatctctgaccaaagtggatgaaagggaaaagcaggcagcattagaggaagaacaggcacgtttgaaagctttaaaggaacagcgcctaaaagaacttgcaaagaaacctcatacctctttaacaactgcagcctctcctgtatccacctcagcaggagggataatgactgcaccagccattgacatattttctacccctagttcttctaacagcacatcaaagctgcccaatgatctgcttgatttgcagcagccaacttttcacccatctgtacatcctatgtcaactgcttctcaggtagcaagtacatggggagatcctttctctgctactgtagatgctgttgatgatgccattccaagcttaaatcctttcctcacaaaaagtagtggtgatgttcacctttccatttcttcagatgtatctacttttactactaggacacctactcatgaaatgtttgttggattcactccttctccagttgcacagccacacccttcagctggccttaatgttgactttgaatctgtgtttggaaataaatctacaaatgttattgtagattctgggggctttgatgaactaggtggacttctcaaaccaacagtggcctctcagaaccagaaccttcctgttgccaaactcccacctagcaagttagtatctgatgacttggattcatctttagccaaccttgtgggcaatcttggcatcggaaatggaaccactaagaatgatgtaaattggagtcaaccaggtgaaaagaagttaactgggggatctaactggcaaccaaaggttgcaccaacaaccgcttggaatgctgcaacaatggcaccccctgtaatggcctatcctgctactacaccaacaggcatgataggatatggaattcctccacaaatgggaagtgttcctgtaatgacgcaaccaaccttaatatacagccagcctgtcatgagacctccaaacccctttggccctgtatcaggagcacagGTGAAATCCCAATTGTTCCACTTAATTTTGTCATGATATCCCTGGAGGGTCCATTTAACAGAGATGTAGTGGAAGGATGTGTGAAGGAGACGTTGCTTTTTTTATCGCGTTCCATTTCCATGAAACAAAATGTGGAGTTTACATTCAAAGGAATTGGGGTCCTCATGATCAGAGACAGCAAAGTGAAGATGAGGTTTTATAAAGACTTCCTTTGTACCATGGATGGAAGTGGGGCTTTGGCAAAGGCCCTAGCAAATAGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGTGCTTGCGTTTCCAAGGATTGAGCTCAAGGAGATGGAAAACAAACTGCCTATGGAGACCCTTGTAGAAGAATGTGGAGAGAATAGAGAAAGGAAGTGCAAGTTAAAAGACCAGTCAGACAAAGAAGAAGGCACCAGAGATATCTCATCACCCAAAAGACTTCGAGATAGACAAGCTTTGTTCCCTGCCAAAGTGACAAATGTCAGCTTGCTGGAAAAGTTTGAACGAAGTGAGAGTGGTGGGAAGATTATGACCCCTGAAAGCTTATCATATCCAAGTTGTCTGAAACACGACAGTGAGATGAAGCCCCAAACATCTCCAGCTTGCCAGGATCATAACAAGGCAGGACAGGAAATGTGCTATGTATGTTTGCAACGAGCACAACGAAATTCCCTGTTGTACTACAGTGAGGAAAGGAGGAGAGAGATAGAAGATGAGAGACTCATACAGCAGTATCAGATGTTAAAGGATCAGGAGGCTCTCTTCAGACACCAGATGAAAAGTCTGGCTACTAGAGAACAGAATCAGAAAAATGCTGCCTATAATCTTGGAGTTGCTGAAGCTATAAGAAACCACAAGAATGAGAAACCGGAATTTTATAAATCCTTCCTATTTGACAAACGGCCACTCAGTCCTGCGCTTAATGCTCTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAATGGATAACAGACAGGAAAACGAAATAAAGCAAAGACAATACAGAGAGTTGATGGACCGCCTGGAACAAGTGCAACTCACAGAGGAACTTGCTGCGCAAAGAGCGAAATTTTTAAAAGATAAGATGGAAGAAACACAGTGTTACAAGAGAGCTTTGGATGCACAGATAAAGAACAAACCCTCTCGGCTGCCCCCCTTTGAGCCAGACTCCTCTGAGCCCATCTTTGGTAAGAATGAGGGTGAACTGATGGTGGAAAAGCAAAAGCGAGAACAAAATTACATGAAACACCAGCTGGAGGCAGCTGCTAACCACAAGAGGAAAGCCATCCTGCATCAACTAGTGGACCAGAGGCGGGATTTGCAAATGCTTCAGAGGACACAAAGAGAGCACTTGGCAGACAGAACCGCTGAGCTGGAGCGAGTAAATAGAGTCAACCAATGCTTACAGGAGGACTGGGAAAGGAGTGCTGCGATGAAGAAGCAGCGAGACCTGGAGGACAAGGCTTTTGAACGGGCTTCAGACAAGCTGTTTCTCCTAGACCAGTGTGAGAAGTATCGGCGCTGCAAGCAATGCCAGAGGCGCACCTCCAACGTGGGCGAGAGCAACCTGTGGCCCCTGAACAAGTTCCTGCCTGGCTCCCGGTTGCTTGTGTAA MSGQSLTDRITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERFIQYLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDIPDLSQAPSSLLDALEQHLASLEGKKIKDSTAASRATTLSNAVSSLASTGLSLTKVDEREKQAALEEEQARLKALKEQRLKELAKKPHTSLTTAASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLDLQQPTFHPSVHPMSTASQVASTWGDPFSATVDAVDDAIPSLNPFLTKSSGDVHLSISSDVSTFTTRTPTHEMFVGFTPSPVAQPHPSAGLNVDFESVFGNKSTNVIVDSGGFDELGGLLKPTVASQNQNLPVAKLPPSKLVSDDLDSSLANLVGNLGIGNGTTKNDVNWSQPGEKKLTGGSNWQPKVAPTTAWNAATMAPPVMAYPATTPTGMIGYGIPPQMGSVPVMTQPTLIYSQPVMRPPNPFGPVSGAQVKSQLFHLILS*YPWRVHLTEM*WKDV*RRRCFFYRVPFP*NKMWSLHSKELGSS*SETAK*R*GFIKTSFVPWMEVGLWQRP*QIGLALWTRCCLAERP*GSGPAVCLRFQGLSSRRWKTNCLWRPL*KNVERIEKGSAS*KTSQTKKKAPEISHHPKDFEIDKLCSLPK*QMSACWKSLNEVRVVGRL*PLKAYHIQVV*NTTVR*SPKHLQLARIITRQDRKCAMYVCNEHNEIPCCTTVRKGGER*KMRDSYSSIRC*RIRRLSSDTR*KVWLLENRIRKMLPIILELLKL*ETTRMRNRNFINPSYLTNGHSVLRLMLLSKRNIPGVS*NKWITDRKTK*SKDNTES*WTAWNKCNSQRNLLRKERNF*KIRWKKHSVTRELWMHR*RTNPLGCPPLSQTPLSPSLVRMRVN*WWKSKSENKIT*NTSWRQLLTTRGKPSCIN*WTRGGICKCFRGHKESTWQTEPLSWSE*IESTNAYRRTGKGVLR*RSSETWRTRLLNGLQTSCFS*TSVRSIGAASNARGAPPTWARATCGP*TSSCLAPGCLC FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE phosphatidylinositol binding clathrin assembly protein (CALM) 1 Yes T-ALL, AML leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33099 TPX2::HM13 ENSG00000088325.16::ENSG00000101294.19 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 2242 TRUE 4088 TRUE 1545 TPX2 ENSG00000088325.16 protein_coding + + chr20:31739271-31801805:+ chr20:31742647:+ chr20:30327074-30389608:+ chr20:30330450:+ HM13 ENSG00000101294.19 protein_coding + + chr20:31514428-31577923:+ chr20:31544947:+ chr20:30102231-30165726:+ chr20:30132750:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.16Mb] 8 18 8 2.03 ONLY_REF_SPLICE YES_LDAS 0.1585 GT 1.8892 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Bladder,Ovary exact TRUE Uterine Corpus Endometrial Carcinoma,Bladder Urothelial Carcinoma UTERUS,BLADDER no_match 30330450|30330450|30327424,30327424 TRUE|TRUE|FALSE,FALSE 30154013|30156923|30154013,30115287 FALSE|FALSE|FALSE,FALSE PARTIALLY,PARTIALLY 5UTR-CDS,5UTR-CDS TRUE Bladder BLADDER no_match 31739621|31739347|31739347 FALSE|FALSE|FALSE 31527484|31527484|31554760 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33100 PVT1::PCAT1 ENSG00000249859.14::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2240 TRUE 4087 TRUE 1544 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127392504:+ chr8:127568568-128431295:+ chr8:128404749:+ chr8:127803739,chr8:127878272,chr8:127878272 chr8:126942400,chr8:127368720,chr8:127368723 NA NA chr8:128815985,chr8:128890518,chr8:128890518 chr8:127954645,chr8:128380966,chr8:128380969 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","ChimerSeq"];INTRACHROMOSOMAL[chr8:0.77Mb] 8 76 8 13.6 ONLY_REF_SPLICE YES_LDAS 0.3413 GT 1.8295 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 127890998 FALSE 127006555 FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33102 SENP2::MAP3K13 ENSG00000163904.13::ENSG00000073803.14 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2247 FALSE NA FALSE NA SENP2 ENSG00000163904.13 protein_coding + + chr3:185582496-185633551:+ chr3:185609350:+ chr3:185300284-185351339:+ chr3:185327138:+ MAP3K13 ENSG00000073803.14 protein_coding + + chr3:185282941-185489094:+ chr3:185487608:+ chr3:185000729-185206882:+ chr3:185205396:+ chr3:185609855 chr3:185483575 NA NA chr3:185327643 chr3:185201363 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.09Mb];LOCAL_REARRANGEMENT:+:[93399] 6 4 6 4 INCL_NON_REF_SPLICE YES_LDAS 0.158 GT 1.7819 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mitogen-activated protein kinase kinase kinase 13 TKL MLK LZK O43283 TRUE Breast,Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE mitogen-activated protein kinase kinase kinase 13 1 Yes breast epithelial oncogene, TSG frameshift 33103 PCAT1::YTHDF3 ENSG00000253438.5::ENSG00000185728.17 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2248 FALSE NA FALSE NA PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339435:+ chr8:127568568-128431295:+ chr8:128351680:+ YTHDF3 ENSG00000185728.17 protein_coding + + chr8:63168553-63212786:+ chr8:63209683:+ chr8:64081112-64125344:+ chr8:64122241:+ chr8:127358653,chr8:127358604,chr8:127358644,chr8:127358650 chr8:63205384,chr8:63205380,chr8:63205374,chr8:63205378 NA NA chr8:128370899,chr8:128370850,chr8:128370890,chr8:128370896 chr8:64117942,chr8:64117938,chr8:64117932,chr8:64117936 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:63.63Mb] 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1738 GT 1.6402 AG 1.4716 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33106 EED::PCAT1 ENSG00000074266.23::ENSG00000253438.5 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EED ENSG00000074266.23 protein_coding + + chr11:86201212-86278813:+ chr11:86264263:+ chr11:85912254-85989855:+ chr11:85975305:+ PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:127339281:+ chr8:127568568-128431295:+ chr8:128351526:+ chr11:86264426,chr11:86264428,chr11:86264429,chr11:86264433,chr11:86264444,chr11:86264445,chr11:86264447,chr11:86264449,chr11:86264456,chr11:86264416 chr8:127112664,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662,chr8:127112662 NA NA chr11:85975468,chr11:85975470,chr11:85975471,chr11:85975475,chr11:85975486,chr11:85975487,chr11:85975489,chr11:85975491,chr11:85975498,chr11:85975458 chr8:128124909,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907,chr8:128124907 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr11--chr8] 3 5 3 3.75 ONLY_REF_SPLICE YES_LDAS 0.1066 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE embryonic ectoderm development 2 malignant peripheral nerve sheath tumours, MDS and related, lung adenocarcinoma epithelial, leukaemia_lymphoma TSG missense, frameshift FALSE NA NA NA NA NA NA NA NA NA 33107 C7orf50::CASC8 ENSG00000146540.15::ENSG00000246228.7 NCIH2171 SRR8616107 SRR8652087 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA C7orf50 ENSG00000146540.15 protein_coding - - chr7:996986-1138260:- chr7:1127257:- chr7:1036622-1177896:- chr7:1166893:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr8] 3 4 3 4 ONLY_REF_SPLICE YES_LDAS 0.1106 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33110 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128808169:- chr8:129646445-130696016:- chr8:129820415:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr17--chr8] 548 979 548 565.23 ONLY_REF_SPLICE YES_LDAS 12.793 GT 1.8062 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33111 RARA::STARD3 ENSG00000131759.18::ENSG00000131748.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2250 TRUE 4104 TRUE 1552 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39662251:+ chr17:37793343-37820454:+ chr17:37818504:+ chr17:40311677,chr17:40311677,chr17:40311649,chr17:40311651,chr17:40311636,chr17:40311663,chr17:40311677,chr17:40311671,chr17:40311681,chr17:40311660,chr17:40311668,chr17:40311664,chr17:40311663,chr17:40311669,chr17:40311670,chr17:40311678,chr17:40311678,chr17:40311678,chr17:40311678 chr17:39661325,chr17:39661327,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661329,chr17:39661322,chr17:39661329,chr17:39661257,chr17:39661313,chr17:39661313,chr17:39661313,chr17:39661314,chr17:39661317,chr17:39661323,chr17:39661325,chr17:39661327,chr17:39661345 NA NA chr17:38467929,chr17:38467929,chr17:38467901,chr17:38467903,chr17:38467888,chr17:38467915,chr17:38467929,chr17:38467923,chr17:38467933,chr17:38467912,chr17:38467920,chr17:38467916,chr17:38467915,chr17:38467921,chr17:38467922,chr17:38467930,chr17:38467930,chr17:38467930,chr17:38467930 chr17:37817578,chr17:37817580,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817582,chr17:37817575,chr17:37817582,chr17:37817510,chr17:37817566,chr17:37817566,chr17:37817566,chr17:37817567,chr17:37817570,chr17:37817576,chr17:37817578,chr17:37817580,chr17:37817598 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RARA:Oncogene","RARA:ArcherDX_panel","RARA:FoundationOne_panel"];["STARD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.65Mb] 385 69 385 61.41 ONLY_REF_SPLICE YES_LDAS 5.1301 GT 1.7819 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33112 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128721628:- chr8:129646445-130696016:- chr8:129733874:- chr17:40283194,chr17:40283194 chr8:128750643,chr8:128751152 NA NA chr17:38439446,chr17:38439446 chr8:129762889,chr8:129763398 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr17--chr8] 183 593 183 72.75 ONLY_REF_SPLICE YES_LDAS 2.939 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33113 WIPF2::CCDC26 ENSG00000171475.14::ENSG00000229140.12 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA TRUE 4103 TRUE 1551 WIPF2 ENSG00000171475.14 protein_coding + + chr17:40219304-40284136:+ chr17:40256522:+ chr17:38375556-38440388:+ chr17:38412774:+ CCDC26 ENSG00000229140.12 lncRNA - - chr8:128634199-129683770:- chr8:128816694:- chr8:129646445-130696016:- chr8:129828940:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTERCHROMOSOMAL[chr17--chr8] 117 1084 117 320.46 ONLY_REF_SPLICE YES_LDAS 5.0272 GT 1.8062 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33114 RARA::STARD3 ENSG00000131759.18::ENSG00000131748.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2251 TRUE 4104 TRUE 1552 RARA ENSG00000131759.18 protein_coding + + chr17:40309180-40357643:+ chr17:40309286:+ chr17:38465432-38513895:+ chr17:38465538:+ STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39662804:+ chr17:37793343-37820454:+ chr17:37819057:+ chr17:40311677,chr17:40311677,chr17:40311649,chr17:40311651,chr17:40311636,chr17:40311663,chr17:40311677,chr17:40311671,chr17:40311681,chr17:40311660,chr17:40311668,chr17:40311664,chr17:40311663,chr17:40311669,chr17:40311670,chr17:40311678,chr17:40311678,chr17:40311678,chr17:40311678 chr17:39661325,chr17:39661327,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661322,chr17:39661329,chr17:39661322,chr17:39661329,chr17:39661257,chr17:39661313,chr17:39661313,chr17:39661313,chr17:39661314,chr17:39661317,chr17:39661323,chr17:39661325,chr17:39661327,chr17:39661345 NA NA chr17:38467929,chr17:38467929,chr17:38467901,chr17:38467903,chr17:38467888,chr17:38467915,chr17:38467929,chr17:38467923,chr17:38467933,chr17:38467912,chr17:38467920,chr17:38467916,chr17:38467915,chr17:38467921,chr17:38467922,chr17:38467930,chr17:38467930,chr17:38467930,chr17:38467930 chr17:37817578,chr17:37817580,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817575,chr17:37817582,chr17:37817575,chr17:37817582,chr17:37817510,chr17:37817566,chr17:37817566,chr17:37817566,chr17:37817567,chr17:37817570,chr17:37817576,chr17:37817578,chr17:37817580,chr17:37817598 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RARA:Oncogene","RARA:ArcherDX_panel","RARA:FoundationOne_panel"];["STARD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.65Mb] 83 45 83 7.59 ONLY_REF_SPLICE YES_LDAS 1.041 GT 1.7819 AG 1.2729 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE retinoic acid receptor, alpha 1 APL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33115 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2254 TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 48 35 48 25.45 ONLY_REF_SPLICE YES_LDAS 0.8441 GT 1.8295 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33117 ZNF91::ENSG00000268461 ENSG00000167232.14::ENSG00000268461.2 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF91 ENSG00000167232.14 protein_coding - - chr19:23304991-23395471:- chr19:23395325:- chr19:23487793-23578273:- chr19:23578127:- ENSG00000268461 ENSG00000268461.2 unprocessed_pseudogene + + chr19:20389658-20390689:+ chr19:20390626:+ chr19:20500467-20501498:+ chr19:20501435:+ chr19:23379429,chr19:23379880,chr19:23379883 chr19:20390172,chr19:20390161,chr19:20390158 NA NA chr19:23562231,chr19:23562682,chr19:23562685 chr19:20500981,chr19:20500970,chr19:20500967 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 29 11 29 9.38 INCL_NON_REF_SPLICE YES_LDAS 0.4411 GT 1.8323 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33119 PRORP::ARHGAP5 ENSG00000100890.16::ENSG00000100852.14 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2255 FALSE NA FALSE NA PRORP ENSG00000100890.16 protein_coding + + chr14:35121846-35277622:+ chr14:35180777:+ chr14:35591052-35746828:+ chr14:35649983:+ ARHGAP5 ENSG00000100852.14 protein_coding + + chr14:32076114-32159728:+ chr14:32117140:+ chr14:32545320-32628934:+ chr14:32586346:+ chr14:35222932 chr14:32114823 NA NA chr14:35692138 chr14:32584029 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RPM2|120-174|1^DnaA_N|122-144|3.7e-05^PPR_long|137-329|3.2e-06^PPR_2|186-204|0.45^PPR|186-203|0.19^PPR_2|213-238|0.0011^PPR|213-238|9e-05^PPR_2|246-276|0.0024^PPR|247-273|0.94^RPM2|250-307|0.00035^OrfB_Zn_ribbon|253-268|0.13^DnaA_N|322-329|4.1^PRORP|342-578|6.4e-110^OrfB_Zn_ribbon|345-369|0.00081^RNase_Zc3h12a|406-522|5.6e-05^PPR_2|505-513|5.8 none none 23 17 23 14.48 ONLY_REF_SPLICE YES_LDAS 0.4307 GT 1.9329 AG 1.4256 ENST00000534898.9 1-1275 ENST00000345122.8 3718-4509 chr14|+|[0]35123246-35124231[1]|[2]35126735-35126782[1]|[2]35127479-35127611[2]|[0]35180670-35180777[2]<==>chr14|+|[0]32117140-32117287[0]|[1]32146263-32146340[0]|[1]32149902-32150033[0]|[1]32152423-32152528[1]|[2]32154621-32154948[2] atgactttctatttgtttggtattcgaagctttccgaagctttggaagagcccataccttgggctaggcccagggcactcttatgtctcgctgtttctggcagaccgctgtggcatcaggaaccagcagaggttgttttctcttaaaacaatgtctccacagaataccaaagcaacgaatctgattgccaaggccagatatctcaggaaagatgagggcagtaataagcaagtttattctgttcctcatttttttttagctggagcagctaaggagagatcacagatgaattctcaaactgaagatcatgccttggcacctgtgaggaacactattcaactcccaacacaacctttgaattcagaggagtgggataaacttaaggaagatttaaaagaaaacaccggaaagaccagtttcgaaagttggatcatttcacagatggctggctgtcatagctctatagatgtggctaaatctctgctggcatgggtagcagccaaaaataatggtattgtaagttacgatttactggtcaagtatttgtatctctgtgtctttcatatgcagacatctgaagttattgatgtctttgaaattatgaaagccagatataagactttagaacctagaggttacagtcttctcatccggggattgatccattcagacagatggagagaagcattgttgctgttagaggacatcaaaaaagttataactccttcaaaaaagaactataatgactgtatccagggagctctccttcatcaagatgtaaacacagcttggaatttatatcaggaattgctaggtcatgatattgttcctatgttggaaactttaaaagctttctttgattttggaaaagacataaaggatgataactattcaaataaactactagatattctttcatatctaagaaataatcagctgtatccaggggagtcatttgcacacagtataaaaacatggtttgagagtgttcctggaaaacaatggaaaggacaattcaccacagtccgaaaaagtggccagtgttcgggctgtggaaaaaccatagagtctattcagctgagtccagaagaatatgaatgtcttaagggaaaaatcatgagggatgtgatagatggaggtgaccagtacagaaagacaacacctcaggaacttaagagatttgagaacttcataaaatctcgtcctccttttgatgttgtcattgatggtctcaatgttgccaaaatgtttcctaaagttcgtgaatctcaacttCAGAAAAAGAAAACTAAGAACTTCAATCCACCAACACGTAGAAATTGGGAAAGTAATTACTTTGGGATGCCCCTCCAGGATCTGGTTACAGCTGAGAAGCCCATACCACTATTTGTTGAGAAATGTGTGGAATTTATTGAAGATACAGGGTTATGTACCGAAGGACTCTACCGTGTCAGCGGGAATAAAACTGACCAAGACAATATTCAAAAGCAGTTTGATCAAGATCATAATATCAATCTAGTGTCAATGGAAGTAACAGTAAATGCTGTAGCTGGAGCCCTTAAAGCTTTCTTTGCAGATCTGCCAGATCCTTTAATTCCATATTCTCTTCATCCAGAACTATTGGAAGCAGCAAAAATCCCGGATAAAACAGAACGTCTTCATGCCTTGAAAGAAATTGTTAAGAAATTTCATCCTGTAAACTATGATGTATTCAGATACGTGATAACACATCTAAACAGGGTTAGTCAGCAACATAAAATCAACCTAATGACAGCAGACAACTTATCCATCTGTTTTTGGCCAACCTTGATGAGACCTGATTTTGAAAATCGAGAGTTTCTGTCTACTACTAAGATTCATCAATCTGTTGTTGAAACATTCATTCAGCAGTGTCAGTTTTTCTTTTACAATGGAGAAATTGTAGAAACGACAAACATTGTGGCTCCTCCACCACCTTCAAACCCAGGACAGTTGGTGGAACCAATGGTGCCACTTCAGTTGCCGCCACCATTGCAACCTCAGCTGATACAACCACAATTACAAACGGATCCTCTTGGTATTATATGA MTFYLFGIRSFPKLWKSPYLGLGPGHSYVSLFLADRCGIRNQQRLFSLKTMSPQNTKATNLIAKARYLRKDEGSNKQVYSVPHFFLAGAAKERSQMNSQTEDHALAPVRNTIQLPTQPLNSEEWDKLKEDLKENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIVSYDLLVKYLYLCVFHMQTSEVIDVFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLQKKKTKNFNPPTRRNWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENREFLSTTKIHQSVVETFIQQCQFFFYNGEIVETTNIVAPPPPSNPGQLVEPMVPLQLPPPLQPQLIQPQLQTDPLGII* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Rho GTPase activating protein 5 2 colon cancer, glioma epithelial, other oncogene missense 33123 TRIM33::DENND2C ENSG00000197323.12::ENSG00000175984.16 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TRIM33 ENSG00000197323.12 protein_coding - - chr1:114392790-114511203:- chr1:114463104:- chr1:114935412-115053824:- chr1:115005726:- DENND2C ENSG00000175984.16 protein_coding - - chr1:114582848-114670422:- chr1:114654761:- chr1:115125469-115213043:- chr1:115197382:- chr1:114455553,chr1:114455555 chr1:114656967,chr1:114656966 NA NA chr1:114998175,chr1:114998177 chr1:115199588,chr1:115199587 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TRIM33:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr1:0.07Mb];LOCAL_REARRANGEMENT:-:[71688] 11 14 11 11.83 ONLY_REF_SPLICE YES_LDAS 0.2623 GT 1.5546 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN E3 ubiquitin-protein ligase TRIM33 Atypical TIF1 Q9UPN9 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tripartite motif-containing 33 (PTC7,TIF1G) 1 papillary thyroid epithelial TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33124 COG5::MIPOL1 ENSG00000164597.15::ENSG00000151338.21 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2256 FALSE NA FALSE NA COG5 ENSG00000164597.15 protein_coding - - chr7:107201372-107564261:- chr7:107527237:- chr7:106841817-107204706:- chr7:107167682:- MIPOL1 ENSG00000151338.21 protein_coding + + chr14:37197894-37579125:+ chr14:37546905:+ chr14:37667099-38048330:+ chr14:38016110:+ chr7:107446519,chr7:107446524 chr14:37534018,chr14:37534013 NA NA chr7:107086964,chr7:107086969 chr14:38003223,chr14:38003218 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame COG5_N|35-158|3.1e-37^COG2|35-157|6.7e-09^VPS51_Exo84_N|38-119|6.4e-16^EXOC6_Sec15_N|64-165|1.2e-05^Sec8_N|66-157|0.00052^DUF6674|95-208|3.3e-06^COG5_C|101-101|1.2^Sec8_N|157-184|1.3^COG5_C|188-393|3.5e-68^Sec8_N|220-277|1.2^DUF6674|302-325|3.4^AceK_regulatory|335-404|2.2e-05^Sec8_N|390-404|3.4^COG2-PARTIAL|503-538~|0.031^VPS51_Exo84_N-PARTIAL|511-538~|4^Sec8_N-PARTIAL|512-538~|2.7 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr14] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1379 GT 1.9656 AG 1.7465 ENST00000297135.9 1-538 ENST00000539062.6 1170-1236 chr7|-|[0]107527237-107527357[0]|[2]107548111-107548180[2]|[1]107548278-107548332[1]|[0]107554285-107554342[0]|[2]107557976-107558115[1]|[0]107563803-107563896[0]<==>chr14|+|[2]37546905-37546971[2] atggaaggtggcggcggcagcgtcgctgtagctggcctcggagctcgaggctctggagcggctgcagctacagtccgggaacttctgcaggacgggtgttatagtgactttttaaacgaagactttgatgtaaagacttatacttctcaatctattcatcaagctgtaattgctgaacaactagcaaaacttgcccaaggaatcagtcagttggacagagaactacacttacaggttgttgcaagacatgaagatttactggcacaagcaactgggattgagtcgttggaaggtgttcttcagatgatgcagacgagaattggggctttacagggagctgttgataggataaaagcaaaaattgttgaaccatacaataagatagttgcccggactgcacaactagcaagacttcaggttgcctgtgatttgcttcggaggattattcgtatcttgaatctcagtaagagactccaaggacaactgcaagggggaagtagagagataacaaaagctgctcagagtctcaatgaacttgGTTGGAAAGGCTGGTGGATGTACTGAGGAAGAAGGTTGGAACCGGGACCATGAGGACAGTGATCTGA MEGGGGSVAVAGLGARGSGAAAATVRELLQDGCYSDFLNEDFDVKTYTSQSIHQAVIAEQLAKLAQGISQLDRELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRIKAKIVEPYNKIVARTAQLARLQVACDLLRRIIRILNLSKRLQGQLQGGSREITKAAQSLNELGWKGWWMY*GRRLEPGP*GQ*S FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33126 PVT1::PNMT ENSG00000249859.14::ENSG00000141744.4 NCIH2170 SRR8616108 SRR8652088 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2253 TRUE 4107 TRUE 1554 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796071:+ chr8:128806772-129199347:+ chr8:128808317:+ PNMT ENSG00000141744.4 protein_coding + + chr17:39667981-39670475:+ chr17:39669629:+ chr17:37824234-37826728:+ chr17:37825882:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr17] 5 42 5 9.83 ONLY_REF_SPLICE YES_LDAS 0.1705 GT 1.9899 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-1204 chr8:127795962-127796028:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33129 ZNF33A::ZNF25-DT ENSG00000189180.16::ENSG00000226447.1 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ZNF33A ENSG00000189180.16 protein_coding + + chr10:38010650-38065088:+ chr10:38017386:+ chr10:38299578-38354016:+ chr10:38306314:+ ZNF25-DT ENSG00000226447.1 lncRNA + + chr10:37976825-37992467:+ chr10:37992327:+ chr10:38265753-38281395:+ chr10:38281255:+ chr10:38050425,chr10:38050423 chr10:37991710,chr10:37991704 NA NA chr10:38339353,chr10:38339351 chr10:38280638,chr10:38280632 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 70 12 70 12 ONLY_REF_SPLICE YES_LDAS 0.8635 GT 1.9656 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33132 ABCB8::CACNA1I ENSG00000197150.13::ENSG00000100346.18 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2257 FALSE NA FALSE NA ABCB8 ENSG00000197150.13 protein_coding + + chr7:151028422-151047782:+ chr7:151042108:+ chr7:150725509-150744869:+ chr7:150739195:+ CACNA1I ENSG00000100346.18 protein_coding + + chr22:39570753-39689735:+ chr22:39658152:+ chr22:39966758-40085740:+ chr22:40054157:+ chr7:151043487,chr7:151043565 chr22:39655006,chr22:39655006 NA NA chr7:150740574,chr7:150740652 chr22:40051011,chr22:40051011 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SbcC_Walker_B|27-57|1.9^ABC_membrane_2|146-307|2.7e-05^ABC_membrane|149-425|1e-56^AAA_30|317-353|7.6^ABC_tran|490-640|1.2e-34^SMC_N|495-517|0.22^ABC_ATPase|496-537|0.16^AAA_25|497-519|0.00017^DEAD|499-519|0.034^APS_kinase|500-540|5e-05^HMUDK_HMUD1|500-545|0.00025^AAA_16|501-666|1.9e-07^Zeta_toxin|501-544|1.4e-07^AAA_22|501-653|3.1e-06^AAA_30|501-527|0.008^AAA_21|502-564|0.0016^DUF87|503-534|7.3e-05^AAA|504-654|0.0011^AAA_30|563-656|0.0013^ABC_ATPase|586-645|3e-05^DEAD|599-658|0.0067^SbcC_Walker_B|606-654|0.0008^SMC_N|611-681|7e-08^AAA_21|612-646|0.44^AAA_25|621-648|0.14 none ["ABCB8:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr7--chr22] 27 16 27 16 ONLY_REF_SPLICE YES_LDAS 0.4528 GT 1.9329 AG 1.7819 ENST00000297504.10 1-1816 ENST00000402142.4 1993-6672 chr7|+|[0]151028516-151028610[1]|[2]151031241-151031291[1]|[2]151033605-151033917[2]|[0]151034273-151034428[2]|[0]151034505-151034599[1]|[2]151034724-151034829[2]|[0]151035581-151035742[2]|[0]151035882-151035967[1]|[2]151036073-151036170[0]|[1]151036544-151036649[1]|[2]151040268-151040301[2]|[0]151040498-151040634[1]|[2]151040828-151040922[0]|[1]151041099-151041232[2]|[0]151041961-151042108[0]<==>chr22|+|[0]39658152-39658303[1]|[2]39658931-39659116[1]|[2]39659433-39659550[2]|[0]39659697-39659852[2]|[0]39660344-39660437[0]|[1]39661108-39661310[2]|[0]39661965-39662435[2]|[0]39662776-39662876[1]|[2]39663718-39663841[2]|[0]39664091-39664159[2]|[0]39664739-39664923[1]|[2]39665498-39665624[2]|[0]39665881-39666006[2]|[0]39668292-39668381[2]|[0]39670038-39670230[0]|[1]39670803-39670954[2]|[0]39672199-39672308[1]|[2]39672949-39673082[0]|[1]39673963-39674033[2]|[0]39677341-39677419[0]|[1]39677987-39678108[2]|[0]39679107-39679445[2]|[0]39679722-39679868[2]|[0]39680930-39681052[2]|[0]39682496-39682661[0]|[1]39684302-39684498[2]|[0]39685761-39686405[2] atgctggtgcatttatttcgggtcgggattcggggtggcccattcccaggcaggctgctaccgcccctccgcttccagacattctcagctgtcagaaacacatggcgtaatgggaaaactggacagttacacaaggcagaaggagagtactctgatggctaccgcagctcctccctcctccgggccgtggcccacctgcggtcccagctctgggcccacctccctcgagcccccctagctcccagatggagcccctctgcctggtgctgggttgggggagccctgctaggccccatggtactgagtaagcatccccacctctgccttgtggccctgtgtgaggcagaagaggcccctcctgccagctccacaccccatgtcgtggggtctcgctttaactggaagctcttctggcagtttctgcacccccacctgctggtcctgggggtagccgtcgtgctggccttgggtgcggcactcgtgaatgtacagatccccctgctcctgggccagctggtagaggtcgtggccaagtacacaagggaccacgtagggagtttcatgactgagtcccagaatctcagcacccacctgcttatcctctatggtgtccagggactgctgaccttcgggtacctggtgctgctgtcccacgttggcgagcgcatggctgtggacatgcggagggccctcttcagctccctgctccgacaagacatcaccttctttgacgccaataagacagggcagctggtgagccgcttgacaactgacgtgcaggagtttaagtcatccttcaagcttgtcatctcccaggggctgcgaagctgcacccaggtggcaggctgcctggtgtccctgtccatgctgtcgacacgcctcacgctgctgctgatggtggccacaccagccctgatgggagtgggcaccctgatgggctcaggcctccgaaaattgtctcgccagtgtcaggagcagatcgccagggcaatgggcgtagcagacgaggccctgggcaatgtgcggactgtgcgtgccttcgccatggagcaacgggaagaggagcgctatggggcagagctggaagcctgccgctgccgggcagaggagctgggccgcggcatcgccttgttccaagggctttccaacatcgccttcaactgcatggtcttgggtaccctatttattgggggctcccttgtggccggacagcagctgacagggggagacctcatgtccttcctggtggcctcccagacagtgcaaaggtccatggccaacctctctgtcctgtttgggcaggtggtccgggggctgagtgcaggtgcccgggtctttgagtacatggccctgaacccctgcatcccactgtctgggggctgctgcgtccccaaagagcagctgcgtggctccgttacatttcagaacgtctgcttcagctacccctgccgccccggcttcgaggtgctgaaagacttcaccctgacgctgccccctggcaagatcgtggccctcgtgggccagtctggcggaggaaagaccaccgtggcttccctgctggagcgcttctacgaccccacggcaggcgtggtgatgctggatgggcgggacctgcgcacccttgacccctcctggctccggggccaggttgtcggcttcatcagccaggagcccgtcctgtttgggacgaccatcatggaaaacatccgctttgggaagctggaagcttccgatgaagaggtgtacacagccgcccgggaagcgaatgctcacgagttcatcaccagcttccccgagggctacaacacggtcgtcgCCGGAGGAGCTGACCAACATCCTGGAGATCTGCAATGTGGTCTTCACCAGCATGTTTGCCCTGGAGATGATCCTGAAGCTGGCTGCATTTGGGCTCTTCGACTACCTGCGTAACCCCTACAACATCTTCGACAGCATCATTGTCATCATCAGCATCTGGGAGATTGTGGGGCAGGCGGACGGTGGGCTGTCGGTGCTGCGGACCTTCCGGCTGCTGCGCGTGCTGAAACTGGTGCGCTTCATGCCTGCCCTGCGGCGCCAGCTCGTGGTGCTCATGAAGACCATGGACAACGTGGCCACCTTCTGCATGCTGCTCATGCTCTTCATCTTCATCTTCAGCATCCTTGGGATGCATATTTTTGGCTGCAAGTTCAGCCTCCGCACGGACACTGGAGACACGGTGCCCGACAGGAAGAACTTCGACTCCCTGCTGTGGGCCATCGTCACTGTGTTCCAGATCCTCACCCAGGAGGACTGGAACGTCGTTCTCTACAATGGCATGGCCTCCACTTCTCCCTGGGCCTCCCTCTACTTTGTCGCCCTCATGACCTTCGGCAACTATGTGCTCTTCAACCTGCTGGTGGCCATCCTGGTGGAGGGCTTCCAGGCGGAGGGTGACGCCAATCGCTCCTACTCGGACGAGGACCAGAGCTCATCCAACATAGAAGAGTTTGATAAGCTCCAGGAAGGCCTGGACAGCAGCGGAGATCCCAAGCTCTGCCCAATCCCCATGACCCCCAATGGGCACCTGGACCCCAGTCTCCCACTGGGTGGGCACCTAGGTCCTGCTGGGGCTGCGGGACCTGCCCCCCGACTCTCACTGCAGCCGGACCCCATGCTGGTGGCCCTGGGCTCCCGAAAGAGCAGTGTCATGTCTCTAGGGAGGATGAGCTATGACCAGCGCTCCCTGTCCAGCTCCCGGAGCTCCTACTACGGGCCATGGGGCCGCAGCGCGGCCTGGGCCAGCCGTCGCTCCAGCTGGAACAGCCTCAAGCACAAGCCGCCGTCGGCGGAGCATGAGTCCCTGCTCTCTGCGGAGCGCGGCGGCGGCGCCCGGGTCTGCGAGGTTGCCGCGGACGAGGGGCCGCCGCGGGCCGCACCCCTGCACACCCCACACGCCCACCACATTCATCACGGGCCCCATCTGGCGCACCGCCACCGCCACCACCGCCGGACGCTGTCCCTCGACAACAGGGACTCGGTGGACCTGGCCGAGCTGGTGCCCGCGGTGGGCGCCCACCCCCGGGCCGCCTGGAGGGCGGCAGGCCCGGCCCCCGGGCATGAGGACTGCAATGGCAGGATGCCCAGCATCGCCAAAGACGTCTTCACCAAGATGGGCGACCGCGGGGATCGCGGGGAGGATGAGGAGGAAATCGACTACACCCTGTGCTTCCGCGTCCGCAAGATGATCGACGTCTATAAGCCCGACTGGTGCGAGGTCCGCGAAGACTGGTCTGTCTACCTCTTCTCTCCCGAGAACAGGTTCCGGGTCCTGTGTCAGACCATTATTGCCCACAAACTCTTCGACTACGTCGTCCTGGCCTTCATCTTTCTCAACTGCATCACCATCGCCCTGGAGCGGCCTCAGATCGAGGCCGGCAGCACCGAACGCATCTTTCTCACCGTGTCCAACTACATCTTCACGGCCATCTTCGTGGGCGAGATGACATTGAAGGTAGTCTCGCTGGGCCTGTACTTCGGCGAGCAGGCGTACCTACGCAGCAGCTGGAACGTGCTGGATGGCTTTCTTGTCTTCGTGTCCATCATCGACATCGTGGTGTCCCTGGCCTCAGCCGGGGGAGCCAAGATCTTGGGGGTCCTCCGAGTCTTGCGGCTCCTGCGCACCCTACGCCCCCTGCGTGTCATCAGCCGGGCGCCGGGCCTGAAGCTGGTGGTGGAGACACTCATCTCCTCCCTCAAGCCCATCGGCAACATCGTGCTCATCTGCTGTGCCTTCTTCATCATCTTTGGCATCCTGGGAGTGCAGCTCTTCAAGGGCAAGTTCTACCACTGTCTGGGCGTGGACACCCGCAACATCACCAACCGCTCGGACTGCATGGCCGCCAACTACCGCTGGGTCCATCACAAATACAACTTCGACAACCTGGGCCAGGCTCTGATGTCCCTCTTTGTCCTGGCATCCAAGGATGGTTGGGTGAACATCATGTACAATGGACTGGATGCTGTTGCTGTGGACCAGCAGCCTGTGACCAACCACAACCCCTGGATGCTGCTGTACTTCATCTCCTTCCTGCTCATCGTCAGCTTCTTTGTGCTCAACATGTTTGTGGGTGTCGTGGTGGAGAACTTCCACAAGTGCCGGCAGCACCAGGAGGCTGAAGAGGCACGGCGGCGTGAGGAGAAGCGGCTGCGGCGCCTGGAGAAGAAGCGCCGGAAGGCCCAGCGGCTGCCCTACTATGCCACCTATTGTCACACCCGGCTGCTCATCCACTCCATGTGCACCAGCCACTACCTGGACATCTTCATCACCTTCATCATCTGCCTCAACGTGGTCACCATGTCCCTGGAGCACTACAATCAGCCCACGTCCCTGGAGACAGCCCTCAAGTACTGCAACTATATGTTCACCACTGTCTTTGTGCTGGAGGCTGTGCTGAAGCTGGTGGCATTTGGTCTGAGGCGCTTCTTCAAGGACCGATGGAACCAGCTGGACCTGGCCATTGTGCTACTGTCAGTCATGGGCATCACCCTGGAGGAGATCGAGATCAATGCGGCCCTGCCCATCAATCCCACCATCATCCGCATCATGAGGGTTCTGCGCATTGCCCGAGTGCTGAAGCTGTTGAAGATGGCCACAGGAATGCGGGCCCTGCTGGACACGGTGGTGCAAGCTTTGCCCCAGGTGGGCAACCTGGGCCTCCTCTTCATGCTGCTCTTCTTCATCTATGCTGCTCTCGGGGTGGAGCTCTTTGGGAAGCTGGTCTGCAACGACGAGAACCCGTGCGAGGGCATGAGCCGGCATGCCACCTTCGAGAACTTCGGCATGGCCTTCCTCACACTCTTCCAGGTCTCCACGGGTGACAACTGGAACGGGATCATGAAGGACACGCTGCGGGACTGCACCCACGACGAGCGCAGCTGCCTGAGCAGCCTGCAGTTTGTGTCGCCGCTGTACTTCGTGAGCTTCGTGCTCACCGCGCAGTTCGTGCTCATCAACGTGGTGGTGGCTGTGCTCATGAAGCACCTGGACGACAGCAACAAGGAGGCGCAGGAGGACGCCGAGATGGATGCCGAGCTCGAGCTGGAGATGGCCCATGGCCTGGGCCCTGGCCCGAGGCTGCCTACCGGCTCCCCGGGCGCCCCTGGCCGAGGGCCGGGAGGGGCGGGCGGCGGGGGCGACACCGAGGGCGGCTTGTGCCGGCGCTGCTACTCGCCTGCCCAGGAGAACCTGTGGCTGGACAGCGTCTCTTTAATCATCAAGGACTCCTTGGAGGGGGAGCTGACCATCATCGACAACCTGTCGGGCTCCATCTTCCACCACTACTCCTCGCCTGCCGGCTGCAAGAAGTGTCACCACGACAAGCAAGAGGTGCAGCTGGCTGAGACGGAGGCCTTCTCCCTGAACTCAGACAGGTCCTCGTCCATCCTGCTGGGTGACGACCTGAGTCTCGAGGACCCCACAGCCTGCCCACCTGGCCGCAAAGACAGCAAGGGTGAGCTGGACCCACCTGAGCCCATGCGTGTGGGAGACCTGGGCGAATGCTTCTTCCCCTTGTCCTCTACGGCCGTCTCGCCGGATCCAGAGAACTTCCTGTGTGAGATGGAGGAGATCCCATTCAACCCTGTCCGGTCCTGGCTGAAACATGACAGCAGTCAAGCACCCCCAAGTCCCTTCTCCCCGGATGCCTCCAGCCCTCTCCTGCCCATGCCAGCCGAGTTCTTCCACCCTGCAGTGTCTGCCAGCCAGAAAGGCCCAGAAAAGGGCACTGGCACTGGAACCCTCCCCAAGATTGCGCTGCAGGGCTCCTGGGCATCTCTGCGGTCACCAAGGGTCAACTGTACCCTCCTCCGGCAGGCCACCGGGAGCGACACGTCGCTGGACGCCAGCCCCAGCAGCTCCGCGGGCAGCCTGCAGACCACGCTCGAGGACAGCCTGACCCTGAGCGACAGCCCCCGGCGTGCCCTGGGGCCGCCCGCGCCTGCTCCAGGACCCCGGGCCGGCCTGTCCCCCGCCGCTCGCCGCCGCCTGAGCCTGCGCGGCCGGGGCCTCTTCAGCCTGCGGGGGCTGCGGGCGCATCAGCGCAGCCACAGCAGCGGGGGCTCCACCAGCCCGGGCTGCACCCACCACGACTCCATGGACCCCTCGGACGAGGAGGGCCGCGGTGGCGCGGGCGGCGGGGGCGCGGGCAGCGAGCACTCGGAGACCCTCAGCAGCCTCTCGCTCACCTCCCTCTTCTGCCCGCCGCCCCCGCCGCCAGCCCCCGGCCTCACGCCCGCCAGGAAGTTCAGCAGCACCAGCAGCCTGGCCGCCCCCGGCCGCCCCCACGCCGCCGCCCTGGCCCACGGCCTGGCCCGGAGCCCCTCGTGGGCCGCGGACCGCAGCAAGGACCCCCCCGGCCGGGCACCGCTGCCCATGGGCCTGGGCCCCTTGGCGCCCCCGCCGCAACCGCTCCCCGGAGAGCTGGAGCCGGGAGACGCCGCCAGCAAGAGGAAGAGATGA MLVHLFRVGIRGGPFPGRLLPPLRFQTFSAVRNTWRNGKTGQLHKAEGEYSDGYRSSSLLRAVAHLRSQLWAHLPRAPLAPRWSPSAWCWVGGALLGPMVLSKHPHLCLVALCEAEEAPPASSTPHVVGSRFNWKLFWQFLHPHLLVLGVAVVLALGAALVNVQIPLLLGQLVEVVAKYTRDHVGSFMTESQNLSTHLLILYGVQGLLTFGYLVLLSHVGERMAVDMRRALFSSLLRQDITFFDANKTGQLVSRLTTDVQEFKSSFKLVISQGLRSCTQVAGCLVSLSMLSTRLTLLLMVATPALMGVGTLMGSGLRKLSRQCQEQIARAMGVADEALGNVRTVRAFAMEQREEERYGAELEACRCRAEELGRGIALFQGLSNIAFNCMVLGTLFIGGSLVAGQQLTGGDLMSFLVASQTVQRSMANLSVLFGQVVRGLSAGARVFEYMALNPCIPLSGGCCVPKEQLRGSVTFQNVCFSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEGYNTVVAGGADQHPGDLQCGLHQHVCPGDDPEAGCIWALRLPA*PLQHLRQHHCHHQHLGDCGAGGRWAVGAADLPAAARAETGALHACPAAPARGAHEDHGQRGHLLHAAHALHLHLQHPWDAYFWLQVQPPHGHWRHGARQEELRLPAVGHRHCVPDPHPGGLERRSLQWHGLHFSLGLPLLCRPHDLRQLCALQPAGGHPGGGLPGGG*RQSLLLGRGPELIQHRRV**APGRPGQQRRSQALPNPHDPQWAPGPQSPTGWAPRSCWGCGTCPPTLTAAGPHAGGPGLPKEQCHVSREDEL*PALPVQLPELLLRAMGPQRGLGQPSLQLEQPQAQAAVGGA*VPALCGARRRRPGLRGCRGRGAAAGRTPAHPTRPPHSSRAPSGAPPPPPPPDAVPRQQGLGGPGRAGARGGRPPPGRLEGGRPGPRA*GLQWQDAQHRQRRLHQDGRPRGSRGG*GGNRLHPVLPRPQDDRRL*ARLVRGPRRLVCLPLLSREQVPGPVSDHYCPQTLRLRRPGLHLSQLHHHRPGAASDRGRQHRTHLSHRVQLHLHGHLRGRDDIEGSLAGPVLRRAGVPTQQLERAGWLSCLRVHHRHRGVPGLSRGSQDLGGPPSLAAPAHPTPPACHQPGAGPEAGGGDTHLLPQAHRQHRAHLLCLLHHLWHPGSAALQGQVLPLSGRGHPQHHQPLGLHGRQLPLGPSQIQLRQPGPGSDVPLCPGIQGWLGEHHVQWTGCCCCGPAACDQPQPLDAAVLHLLPAHRQLLCAQHVCGCRGGELPQVPAAPGG*RGTAA*GEAAAAPGEEAPEGPAAALLCHLLSHPAAHPLHVHQPLPGHLHHLHHLPQRGHHVPGALQSAHVPGDSPQVLQLYVHHCLCAGGCAEAGGIWSEALLQGPMEPAGPGHCATVSHGHHPGGDRDQCGPAHQSHHHPHHEGSAHCPSAEAVEDGHRNAGPAGHGGASFAPGGQPGPPLHAALLHLCCSRGGALWEAGLQRREPVRGHEPACHLRELRHGLPHTLPGLHG*QLERDHEGHAAGLHPRRAQLPEQPAVCVAAVLRELRAHRAVRAHQRGGGCAHEAPGRQQQGGAGGRRDGCRARAGDGPWPGPWPEAAYRLPGRPWPRAGRGGRRGRHRGRLVPALLLACPGEPVAGQRLFNHQGLLGGGADHHRQPVGLHLPPLLLACRLQEVSPRQARGAAG*DGGLLPELRQVLVHPAG*RPESRGPHSLPTWPQRQQG*AGPT*AHACGRPGRMLLPLVLYGRLAGSRELPV*DGGDPIQPCPVLAET*QQSSTPKSLLPGCLQPSPAHASRVLPPCSVCQPERPRKGHWHWNPPQDCAAGLLGISAVTKGQLYPPPAGHRERHVAGRQPQQLRGQPADHARGQPDPERQPPACPGAARACSRTPGRPVPRRSPPPEPARPGPLQPAGAAGASAQPQQRGLHQPGLHPPRLHGPLGRGGPRWRGRRGRGQRALGDPQQPLAHLPLLPAAPAASPRPHARQEVQQHQQPGRPRPPPRRRPGPRPGPEPLVGRGPQQGPPRPGTAAHGPGPLGAPAATAPRRAGAGRRRQQEEEM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33134 KAZN::FHAD1 ENSG00000189337.17::ENSG00000142621.21 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2259 FALSE NA FALSE NA KAZN ENSG00000189337.17 protein_coding + + chr1:13892792-15118043:+ chr1:15044159:+ chr1:14219287-15444539:+ chr1:15370655:+ FHAD1 ENSG00000142621.21 protein_coding + + chr1:15236521-15400283:+ chr1:15327059:+ chr1:15563017-15726779:+ chr1:15653555:+ chr1:15049593,chr1:15049589 chr1:15317139,chr1:15317132 NA NA chr1:15376089,chr1:15376085 chr1:15643635,chr1:15643628 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ANIS5_cation-bd|29-53|4.1^DUF1192|166-177|1.1^Vac7|176-270|0.18^DUF2130|187-234|0.36^DUF1192|201-234|0.00027^SAM_KSR1|203-203|1.7^ANIS5_cation-bd|211-285|8.4e-06^DUF2130|232-326|1e-05^SAM_KSR1|243-276|0.0052^ROQ_II|265-296|8.6e-05^SAM_KSR1|308-327|0.71^DUF1192|318-336|0.04^Vac7|381-505|6.5e-05^SAM_1|532-596|1.3e-11^SAM_PNT|532-579|0.011^SAM_2|534-595|1.4e-08^SAM_KSR1|538-575|0.0032^SAM_1|615-671|6.1e-16^SAM_KSR1|618-630|0.55^SAM_2|619-673|2.5e-10^SAM_PNT|632-656|1.4^SAM_PNT|685-710|0.0007^SAM_2|698-754|6.3e-13^SAM_1|699-727|4.9e-05 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.13Mb] 23 9 23 7.67 ONLY_REF_SPLICE YES_LDAS 0.323 GT 1.8323 AG 1.9899 ENST00000636203.1 1-990 ENST00000688493.1 1474-4440 chr1|+|[0]13893666-13893756[0]|[1]14180435-14180592[2]|[0]14598983-14599223[0]|[1]14960684-14960875[0]|[1]15034749-15034885[2]|[0]15043989-15044159[2]<==>chr1|+|[0]15327059-15327142[2]|[0]15328277-15328429[2]|[0]15329346-15329541[0]|[1]15339481-15339551[2]|[0]15341736-15341888[2]|[0]15345083-15345190[2]|[0]15345416-15345523[2]|[0]15349042-15349149[2]|[0]15352877-15352984[2]|[0]15358110-15358283[2]|[0]15360478-15360703[0]|[1]15362642-15362726[1]|[2]15365827-15365933[0]|[1]15367463-15367622[1]|[2]15369370-15369502[2]|[0]15374502-15374631[0]|[1]15375603-15375730[2]|[0]15380701-15380796[2]|[0]15381231-15381451[1]|[2]15382028-15382193[2]|[0]15388051-15388131[2]|[0]15391210-15391263[2]|[0]15397297-15397413[2] atggaatccacgctggcgacatccaattctgccacaggccccgtcaccttctcccacgtctttggtcagcagtgccaacttatgcaagcagctgtgcaatcattgcacaccctcaatgaccagatttcccattttattgtcaccaagtcgaaggcactggaggaggacaaagacccttttctacccactgagaaggagactctgaagagttccatgatattgatgaggcacctcttaatggatgctcaggccaaaatcctgagcatgatggaagacaataagcagctcgcgctccgcatcgatggggcggtccagtcggccagccaggaggtgaccaacctgcgagccgaactcacggccaccaaccggagactggcggaactgagcggcggcggcggccccggcccgggcccgggagccgcggccagcgcctcggcggcgggggactcggcggcgacgaacatggagaacccccagcttggagcgcaagtgctcctgcgggaagaagtgtcgcggctccaggaggaagttcaccttctccggcagatgaaggagatgttggcgaaggacctggaggagtcgcagggcggcaagtcctctgaggtcctctcggccaccgagctcagggtccagctggcccagaaggagcaggagctagccagagccaaagaagccttgcaggccatgaaagctgatcggaagcgcttaaagggcgagaagacagacctggtgagccagatgcagcagctgtatgccacactggagagccgcgaggagcagctccgagacttcatccgcaactatgagcagcaccgcaaggagagcgaggatgcggtcaaagcgctggccaaggagaaggacctgctggagcgtgagaagtgggagctgcggcgccaagccaaggaggccacagaccacgccacggcactgcgctcccagctggacctcaaggacaaccggatgaaggagctggaggccgagctggccatgCTGGAGCACTTCAGAAGTCAAGTCATCAAGGCCACCTATGGACGGGCGAAGCCGTTCCGGGACAAGCCCGTCACCGACCAACAGTTAATAGAGAAAATTACCCAGGTCACTGAGGACAACATCAATTTTCAGCAGAAAAAGTGGACCCTCCAGAAAGAGACCCAGCTGAGCAACTCCAAGCAGGAGGAGACCACCGAGAACATCGAGAAGCTGAGGACGTCGCTGGACAGCTGCCAGGCTTGCATGAAAATATCCTGTTGCAGCCATGACCTGAAGAAGGAGGTCGACCTTCTTCAGCACCTCCAGGTGAGCCCACCTGTCTCGGGGCTCCAGAAGGTGGTGCTGGACGTCCTGAGGCACGCGCTGTCCTGGCTGGAGGAGGTGGAGCAGCTCCTCCGGGACCTCGGGATCCTGCCCTCCAGCCCCAACAAAGGGTTCTCTTTGTATCTGATATATCTTCTGGAACATTATAAAAAACTTATGAGCCAGGCCCAGGAACTTCAGATCAAGTTCAACAGTTCTCAGGAAACTCAGCAGTCTTTACTGCAGGAAAAGCTGCGGGAGCATCTGGCAGAGAAGGAGAAGCTGAACGAGGAGAGGCTAGAGCAAGAGGAGAAGCTCAAAGCCAAAATCAGGCAACTGACGGAAGAGAAGGCGGCTTTGGAGGAGTACATTACTCAAGAGAGAAACAGAGCGAAAGAGACTTTAGAGGAAGAACGGAAGAGAATGCAAGAACTGGAGAGCCTCCTGGCCCAGCAGAAGAAGGCTTTGGCGAAAAGCATTACCCAGGAGAAGAACAGAGTGAAGGAAGCATTAGAGGAAGAGCAGACAAGAGTCCAAGAGCTGGAGGAACGCTTGGCCCGCCAGAAGGAGGTTTTGGAGAGCAGCATAGCCCATGAAAAAAGAAAAGCAAAGGAAGCCTTGGAGTCGGAAAAGAGAAAAGTTCAGGATCTGGAGAACCATTTAACCCAACAGAAGGAGATCTCAGAGAGCAACATTGCGTACGAGAAACGCAAAGCAAAGGAGGCCATGGAGAAGGAAAAGAAAAAGGTGCAAGACCTGGAGAATCGCTTAACCAAGCAGAAAGAGGAATTAGAATTAAAAGAGCAAAAAGAGGACGTTTTAAATAATAAATTAAGTGACGCACTGGCCATGGTTGAAGAGACTCAGAAAACAAAGGCAACTGAAAGTCTAAAAGCAGAGAGCCTCGCCTTGAAATTAAATGAAACATTAGCCGAACTGGAAACTACCAAGACAAAAATGATCATGGTGGAAGAGCGGCTAATCCTGCAGCAGAAGATGGTAAAGGCCCTCCAGGATGAGCAGGAATCACAGAGACACGGGTTTGAAGAAGAGATCATGGAATATAAGGAGCAAATCAAACAGCACGCCCAGACAATTGTGAGCCTCGAAGAGAAACTCCAGAAAGTCACTCAGCACCATAAAAAAATAGAAGGCGAGATTGCAACATTGAAGGACAATGACCCAGCCCCAAAGGAGGAAAGGCCGCAAGACCCTCTGGTGGCTCCCATGACAGAGAGCAGTGCCAAAGACATGGCGTACGAACATCTGATAGATGACTTATTGGCTGCTCAGAAGGAAATTCTGTCTCAGCAGGAAGTCATCATGAAGTTAAGGAAAGACCTTACCGAAGCCCACAGCAGAATGTCGGATTTGAGAGGGGAGCTAAACGAGAAGCAGAAGATGGAACTGGAGCAGAACGTGGTGCTGGTCCAGCAGCAGAGCAAGGAGCTGAGTGTGCTCAAGGAGAAGATGGCCCAGATGAGCAGCCTGGTAGAAAAGAAAGATCGGGAGCTGAAGGCCCTTGAGGAGGCACTCAGGGCTTCCCAAGAGAAACACAGACTCCAGCTGAACACAGAGAAGGAACAGAAGCCCCGGAAGAAGACCCAGACGTGTGACACCTCTGTGCAGATAGAACCCGTCCACACTGAGGCCTTCTCCAGCAGCCAAGAGCAGCAATCCTTCAGCGATCTAGGGGTCAGGTGCAAAGGGTCCCGGCACGAGGAGGTCATTCAGCGTCAGAAAAAGGCCTTATCTGAACTTCGAGCGCGAATTAAAGAACTCGAGAAGGCGCGCTCACCAGATCATAAAGACCACCAGAATGAATCATTTCTAGATTTAAAGAACCTCAGAATGGAAAACAATGTCCAGAAAATACTACTGGATGCAAAACCGGATTTGCCAACTCTCTCAAGAATAGAGATCCTAGCGCCTCAGAATGGCCTTTGCAACGCAAGGTTCGGCTCAGCCATGGAGAAGTCAGGGAAGATGGATGTGGCTGAGGCTTTAGAGCTCAGTGAAAAGCTGTACCTGGATATGAGCAAAACCCTCGGAAGTCTCATGAACATCAAGAATATGTCAGGCCACGTGTCCATGAAATACCTCTCCCGCCAGGAGAGGGAGAAGGTCAACCAGCTTCGACAAAGGGACCTCGACCTGGTGTTTGATAAGATCACCCAACTCAAGAACCAGCTGGGGAGGAAAGAGGAGCTGTTGAGAGGATATGAAAAGGACGTTGAACAGCTCAGGCGGAGCAAAGTGTCCATTGAGATGTACCAGTCGCAGGTGGCAAAGCTGGAGGATGATATCTACAAAGAGGCCGAAGAGAAGGCCCTGCTGAAGGAGGCCCTGGAGCGCATGGAGCACCAGCTGTGCCAGGAGAAGAGGATCAACAGGGCCATCCGGCAGCAGAAGGAAAGTGTAGAGGAGCACGAACTGAGAAACGCAAAAGAATCGACACCTTGCAACTGTGCCTTCAAAGAGAAAGACAGGCAGAGACGAGTATTTGTAGAGATGGTGAAGAACAGGATGCAGAACTCAAATTCCCAGGTTGGAACCAGAAAAGCCTCCCTAAAGATGGACCAAGAAAGAGAGATGCTGAGGAAAGAGACCTCCAGCAAGTCCAGCCAGAGCCTTTTGCATTCTAAGCCCAGTGGAAAGTACTAG MESTLATSNSATGPVTFSHVFGQQCQLMQAAVQSLHTLNDQISHFIVTKSKALEEDKDPFLPTEKETLKSSMILMRHLLMDAQAKILSMMEDNKQLALRIDGAVQSASQEVTNLRAELTATNRRLAELSGGGGPGPGPGAAASASAAGDSAATNMENPQLGAQVLLREEVSRLQEEVHLLRQMKEMLAKDLEESQGGKSSEVLSATELRVQLAQKEQELARAKEALQAMKADRKRLKGEKTDLVSQMQQLYATLESREEQLRDFIRNYEQHRKESEDAVKALAKEKDLLEREKWELRRQAKEATDHATALRSQLDLKDNRMKELEAELAMLEHFRSQVIKATYGRAKPFRDKPVTDQQLIEKITQVTEDNINFQQKKWTLQKETQLSNSKQEETTENIEKLRTSLDSCQACMKISCCSHDLKKEVDLLQHLQVSPPVSGLQKVVLDVLRHALSWLEEVEQLLRDLGILPSSPNKGFSLYLIYLLEHYKKLMSQAQELQIKFNSSQETQQSLLQEKLREHLAEKEKLNEERLEQEEKLKAKIRQLTEEKAALEEYITQERNRAKETLEEERKRMQELESLLAQQKKALAKSITQEKNRVKEALEEEQTRVQELEERLARQKEVLESSIAHEKRKAKEALESEKRKVQDLENHLTQQKEISESNIAYEKRKAKEAMEKEKKKVQDLENRLTKQKEELELKEQKEDVLNNKLSDALAMVEETQKTKATESLKAESLALKLNETLAELETTKTKMIMVEERLILQQKMVKALQDEQESQRHGFEEEIMEYKEQIKQHAQTIVSLEEKLQKVTQHHKKIEGEIATLKDNDPAPKEERPQDPLVAPMTESSAKDMAYEHLIDDLLAAQKEILSQQEVIMKLRKDLTEAHSRMSDLRGELNEKQKMELEQNVVLVQQQSKELSVLKEKMAQMSSLVEKKDRELKALEEALRASQEKHRLQLNTEKEQKPRKKTQTCDTSVQIEPVHTEAFSSSQEQQSFSDLGVRCKGSRHEEVIQRQKKALSELRARIKELEKARSPDHKDHQNESFLDLKNLRMENNVQKILLDAKPDLPTLSRIEILAPQNGLCNARFGSAMEKSGKMDVAEALELSEKLYLDMSKTLGSLMNIKNMSGHVSMKYLSRQEREKVNQLRQRDLDLVFDKITQLKNQLGRKEELLRGYEKDVEQLRRSKVSIEMYQSQVAKLEDDIYKEAEEKALLKEALERMEHQLCQEKRINRAIRQQKESVEEHELRNAKESTPCNCAFKEKDRQRRVFVEMVKNRMQNSNSQVGTRKASLKMDQEREMLRKETSSKSSQSLLHSKPSGKY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33141 BEND3::PDSS2 ENSG00000178409.14::ENSG00000164494.12 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2263 FALSE NA FALSE NA BEND3 ENSG00000178409.14 protein_coding - - chr6:107065182-107115515:- chr6:107115090:- chr6:107386386-107436719:- chr6:107436294:- PDSS2 ENSG00000164494.12 protein_coding - - chr6:107152562-107459564:- chr6:107154777:- chr6:107473766-107780768:- chr6:107475981:- chr6:107105244,chr6:107105244,chr6:107105248 chr6:107188122,chr6:107188126,chr6:107188127 NA NA chr6:107426448,chr6:107426448,chr6:107426452 chr6:107509326,chr6:107509330,chr6:107509331 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_REARRANGEMENT:-:[37288] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1053 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33144 EIF2A::MED12L ENSG00000144895.12::ENSG00000144893.13 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2261 FALSE NA FALSE NA EIF2A ENSG00000144895.12 protein_coding + + chr3:150546678-150586016:+ chr3:150568292:+ chr3:150264465-150303803:+ chr3:150286079:+ MED12L ENSG00000144893.13 protein_coding + + chr3:151085286-151437072:+ chr3:151156161:+ chr3:150803073-151154860:+ chr3:150873948:+ chr3:150569421,chr3:150569459,chr3:150569457 chr3:151137753,chr3:151137753,chr3:151137748 NA NA chr3:150287208,chr3:150287246,chr3:150287244 chr3:150855540,chr3:150855540,chr3:150855535 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ANAPC4_WD40|38-83|0.0011^eIF2A|58-93|0.015^ANAPC4_WD40|108-137|0.013^eIF2A|134-173|0.065^eIF2A|216-411|9e-82^ANAPC4_WD40|322-365|0.065^ANAPC4_WD40|361-404|0.035 Med12-LCEWAV-PARTIAL|~557-765|2.2e-202^Cortex-I_coil|1490-1540|0.00061^Med12-PQL|1837-2054|2.5e-70^Med12-PQL|2088-2157|4 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.50Mb] 9 12 9 12 ONLY_REF_SPLICE YES_LDAS 0.2212 GT 1.9656 AG 1.8892 ENST00000460851.6 1-811 ENST00000687756.1 557-6543 chr3|+|[0]150546803-150546830[0]|[1]150552356-150552425[1]|[2]150558388-150558462[1]|[2]150562542-150562660[0]|[1]150563515-150563614[1]|[2]150564299-150564381[0]|[1]150567693-150567766[2]|[0]150567902-150568046[0]|[1]150568176-150568292[0]<==>chr3|+|[1]151156161-151156330[2]|[0]151158689-151158799[2]|[0]151159832-151160101[2]|[0]151163893-151164042[2]|[0]151165420-151165519[0]|[1]151165846-151165982[2]|[0]151185330-151185461[2]|[0]151188354-151188480[0]|[1]151190717-151190931[2]|[0]151192550-151192654[2]|[0]151193490-151193666[2]|[0]151350059-151350206[0]|[1]151355121-151355239[2]|[0]151355896-151356039[2]|[0]151357213-151357376[1]|[2]151360474-151360605[1]|[2]151364979-151365206[1]|[2]151365850-151365991[2]|[0]151367646-151367766[0]|[1]151368150-151368251[0]|[1]151369436-151369549[0]|[1]151372567-151372766[2]|[0]151376026-151376214[2]|[0]151376800-151376874[2]|[0]151376991-151377178[1]|[2]151378012-151378173[1]|[2]151380113-151380224[2]|[0]151382656-151382745[2]|[0]151383779-151383888[1]|[2]151384083-151384218[2]|[0]151385030-151385191[2]|[0]151387810-151388172[2]|[0]151389979-151390135[0]|[1]151394656-151394867[2]|[0]151409243-151409332[2]|[0]151411278-151411507[1]|[2]151413139-151413295[2]|[0]151416312-151416422[2]|[0]151430299-151430380[0]|[1]151432752-151432804[2] atggcgccgtccacgccgctcttgacagtccgaggatcagaaggactgtacatggtgaatggaccaccacattttacagaaagcacagtgtttccaagggaatctgggaagaattgcaaagtctgtatctttagtaaggatgggaccttgtttgcctggggcaatggagaaaaagtaaatattatcagtgtcactaacaagggactactgcactccttcgacctcctgaaggcagtttgccttgaattctcacccaaaaatactgtcctggcaacgtggcagccttacactacttctaaagatggcacagctgggatacccaacctacaactttatgatgtgaaaactgggacatgtttgaaatctttcatccagaaaaaaatgcaaaattggtgtccatcctggtcagaagatgaaactctttgtgcccgcaatgttaacaatgaagttcacttctttgaaaacaacaattttaacacaattgcaaataaattgcatttgcaaaaaattaatgattttgtattatcacctggaccccaaccatacaaggtggctgtctatgttccaggaagtaaaggtgcaccttcatttgttagattatatcagtaccccaactttgctggacctcatgcagctttagctaataaaagtttctttaaggcagataaagttacaatgctgtggaataaaaaagctactgctgtgttggtaatagctagcacagatgttgacaagacaggagcttcctactatggagaacaaactctacactacattgcaacaaatggagaaagtgctgtagtgcaattacAGTGGACACAGATATCTACCAGATATCTTCGAGAGCAGTTGGCCAAGATTTCTGACTTTTACCACATGGCCTCCAGCACGGGCGATGGCCCTGTCCCTGTGCCACCAGAGGTGGAGCAAGCCATGAAGCAATGGGAATACAACGAAAAGCTAGCATTTCACATGTTCCAGGAAGGAATGTTAGAAAAACACGAATATTTGACATGGATCCTGGATGTTTTAGAAAAGATCAGACCAATGGATGATGATCTTCTTAAACTCTTGCTACCACTAATGCTGCAGTATTCAGATGAGTTTGTTCAGTCGGCCTACCTGTCTCGTCGTCTTGCCTACTTTTGTGCCCGGCGTCTTTCCTTGCTGCTGAGCGATAGCCCCAACCTCCTTGCTGCCCACTCACCCCACATGATGATAGGACCAAACAACTCGAGTATCGGGGCCCCCAGCCCTGGCCCCCCCGGCCCTGGCATGAGCCCCGTGCAGCTGGCCTTCTCAGATTTTCTTTCCTGTGCACAGCATGGTCCCCTGGTTTATGGACTTAGTTGTATGTTGCAGACTGTCACTCTCTGTTGCCCAAGTGCCTTGGTGTGGAATTATTCCACAAATGAAAATAAGAGCGCAAACCCAGGCTCACCCCTGGATCTGCTGCAGGTGGCCCCGTCCAGCCTCCCCATGCCGGGTGGGAACACGGCTTTCAATCAGCAGGTTCGGGCAAGGATTTATGAAGTAGAACAACAGATAAAACAAAGAGGCCGTGCAGTGGAAGTTCGGTGGTCATTTGACAAGTGCCAAGAATCCACAGCAGGGGTGACTATTAGTCGGGTTTTGCACACGTTGGAAGTTTTGGATCGTCACTGTTTTGACCGAACTGATTCCAGCAATTCCATGGAGACACTTTATCATAAGATTTTCTGGGCAAACCAAAACAAAGATAACCAAGAGGTTGCGCCCAACGATGAAGCTGTGGTGACGCTGTTATGTGAATGGGCCGTGAGCTGCAAACGGTCTGGCAAGCACAGGGCCATGGCTGTGGCAAAACTCCTGGAGAAGAGGCAAGCAGAAATTGAGGCAGAGAGATGTGGTGAATCAGAAGTCTTAGATGAGAAGGAGTCTATTTCTTCATCCTCTCTTGCTGGATCCAGTTTGCCTGTTTTCCAGAATGTGCTGTTAAGGTTTTTAGATACACAGGCCCCCTCTTTGTCGGACCCAAACAGTGAATGTGAAAAGGTGGAATTTGTGAACCTGGTGCTGCTCTTCTGCGAGTTCATCCGCCATGATGTCTTCTCCCATGACGCATACATGTGTACCCTCATATCTCGAGGAGATTTGTCAGTCACTGCCTCAACTCGGCCGCGGTCACCAGTAGGGGAAAATGCAGATGAACACTATTCAAAGGACCATGATGTGAAAATGGAGGAACAGAGTATTATGGCGCATATGGGCATTGACTCAGGAACCACTAACATTTTTGATGAAGTAGACAAGAGTGACTTTAAAACTGACTTTGGTTCGGAATTTCCAATTTTTTCTCCTATGCCTGGAGAATCCTGTGAGAATGCCAACACTTCGTTGGGCAGAAGAATGTCAGTTAATTGTGAGAAGTTGGTGAAGAGGGAAAAGCCAAGGGAATTAATTTTTCCATCTAATTATGACCTCCTTCGCCACTTACAGTATGCAACACATTTTCCTATACCTCTGGATGAATCTTCAAGTCATGAATGTAACCAGCGCACAATCCTTCTCTATGGAGTCGGCAAAGAGCGTGATGAAGCAAGGCATCAGCTGAAGAAGATTACCAAAGATATCCTGAAAATTCTAAATAAGAAGAGCACCACAGAGACAGGGGTTGGGGACGAAGGACAAAAAGCCAGGAAGAACAAACAGGAGACATTTCCAACACTGGAGACTGTGTTCACTAAACTCCAGCTCCTTTCATATTTTGATCAACATCAAGTGACATCTCAGATTTCTAACAATGTGCTAGAACAAATCACAAGCTTTGCGTCAGGAACATCCTATCATCTCCCTTTGGCTCACCACATTCAGCTCATCTTTGATCTCATGGAGCCAGCACTGAACATCAACGGACTAATTGACTTCGCAATACAGTTACTAAATGAACTGAGTGTTGTGGAAGCTGAACTGCTCCTAAAATCCTCCAGCCTGGCAGGAAGTTATACAACAGGACTGTGTGTCTGCATCGTGGCTGTTCTCAGGCGCTATCACAGTTGTCTAATCTTGAATCCTGATCAGACAGCCCAGGTGTTTGAAGGGTTGTGTGGTGTGGTCAAGCATGTCGTAAACCCCTCAGAATGTTCTTCCCCTGAAAGATGCATTTTAGCCTACCTCTATGATCTCTATGTGTCATGTAGCCACCTCAGAAGTAAATTTGGAGACCTCTTCAGTAGTGCCTGTTCAAAAGTAAAGCAAACCATATATAATAACGTGATGCCTGCAAATTCGAACTTGCGATGGGATCCAGACTTCATGATGGATTTTATTGAGAATCCCTCAGCCCGCAGCATCAACTACTCAATGCTGGGCAAGATCCTCAGTGACAATGCGGCCAATCGCTACAGCTTTGTCTGCAATACACTCATGAATGTATGTATGGGCCATCAGGATGCTGGCAGGATTAACGACATAGCCAATTTCTCCTCTGAGCTTACGGCTTGCTGCACTGTTCTTAGTTCAGAATGGCTGGGGGTTCTGAAGGCTCTTTGTTGTTCTTCAAATCACGTGTGGGGGTTTAATGATGTACTTTGCACTGTAGATGTGAGTGACCTTTCATTCCATGATTCATTAGCTACTTTCATTGCTATTCTGATAGCACGACAGTGTTTTTCCCTGGAGGACGTCGTGCAGCATGTCGCACTTCCCTCTCTTCTAGCAGCAGCTTGTGGGGATGCGGACGCCGAGCCTGGGGCGAGAATGACATGCCGACTCTTGCTTCATCTCTTCCGAGCTCCCCAGGCCTGCTTCTTACCTCAAGCAACGGGCAAACCTTTCCCTGGAATAAGATCATCTTGTGATAGACACCTCTTAGCCGCTGCTCACAACAGCATTGAAGTGGGAGCCGTGTTTGCTGTCTTAAAAGCAATTATGATGCTTGGAGATGCCAAAATTGGCAATAACAGTGTCAGCTCTTTAAAGAATGATGACTTCACCATGAGAGGTTTGCGATGTGATGGGAATGCTGATGATATCTGGACTGCCTCACAAAATCCAAAATCCTGTGGGAAAAGCATTTCCATAGAAACTGCCAATTTAAGAGAATACGCTAGATATGTACTGAGGACTATCTGTCAACAGGAATGGGTAGGAGAGCATTGCTTAAAAGAACCTGAAAGATTATGTACAGACAAAGAACTTATATTGGACCCTGTGCTTTCAAATATGCAAGCACAGAAATTACTGCAGCTTATCTGTTATCCTCATGGCATTAAAGAATGTACCGAGGGGGACAATCTGCAAAGACAGCACATTAAGCGTATTCTTCAGAATCTTGAGCAGTGGACACTGAGGCAATCCTGGTTAGAACTCCAGCTAATGATCAAACAGTGCTTGAAGGACCCTGGCTCTGGTTCTGTGGCCGAAATGAACAACTTACTGGACAATATTGCAAAGGCAACAATAGAGGTATTCCAGCAGTCTGCAGACCTAAATAATTCTTCTAATTCTGGCATGAGCCTCTTCAACCCAAACAGTATTGGAAGTGCTGATACAAGTAGCACGAGACAGAATGGAATAAAGACATTCCTAAGTTCCTCCGAACGCAGGGGTGTATGGTTGGTGGCCCCCCTCATCGCCAGGTTGCCAACTTCTGTGCAAGGAAGAGTGCTGAAAGCCGCTGGGGAAGAGCTGGAGAAGGGACAGCACTTGGGTTCTTCTTCCAAAAAGGAAAGGGACAGACAGAAACAGAAAAGTATGTCTCTTTTGAGTCAACAACCCTTCCTCTCACTGGTACTTACCTGCCTTAAGGGACAAGATGAACAAAGGGAAGGCCTCCTAACATCTCTCCAGAATCAAGTTAACCAGATTTTAAGTAACTGGAGAGAAGAACGATACCAAGATGACATAAAAGCGCGGCAGATGATGCACGAAGCATTGCAACTCCGCCTAAATTTGGTAGGAGGAATGTTTGACACGGTGCAGAGGAGCACCCAGTGGACTACAGACTGGGCCCTGCTACTCCTTCAGATCATTACTTCAGGAACTGTTGACATGCACACTAACAATGAATTATTCACAACAGTTCTTGACATGCTGGGTGTTTTAATCAATGGAACGTTAGCCTCTGACCTATCAAATGCATCCCCTGGGGGATCTGAAGAGAACAAGCGTGCATACATGAATTTAGTAAAGAAACTGAAAAAAGAGCTAGGAGACAAGCGATCAGAAAGTATTGACAAAGTTCGACAGTTACTACCTTTGCCGAAACAGACATGTGATGTCATCACTTGTGAACCTATGGGTTCCTTGATTGACACAAAAGGAAACAAAATTGCTGGATTTGACTCTATAGATAAAAAACAGGGTCTCCAGGTCTCTACGAAGCAGAAGGTGTCCCCGTGGGACTTGTTTGAGGGTCAGAAGAACCCAGCTCCTTTGTCCTGGGCCTGGTTTGGGACAGTCCGAGTGGACCGAAGAGTGATCAAGTACGAGGAGCAGCATCACCTCCTGCTGTATCACACACACCCCATGCCCAAGCCCCGCAGTTACTACCTCCAGCCACTGCCCCTGCCTCCTGAGGAGGAAGAGGAAGAGCCCACATCTCCAGTTTCTCAGGAACCAGAAAGGAAGTCCGCTGAGCTGTCAGATCAGGGAAAAACCACAACAGATGAAGAAAAGAAAACAAAAGGAAGGAAGCGCAAGACGAAATCTAGCTCAAGAGTTGATGAATATCCACAGAGCAACATATACCGAGTGCCTCCTAATTACTCGCCTATCTCCTCCCAAATGATGCACCATCCACAGTCCACCTTGTGGGGTTACAACCTCGTGGGCCAGCCCCAGCAGCCCGGCTTTTTCCTTCAGAACCAATCTCTTACTCCAGGTGGCTCCAGATTGGACCCTGCAGGCTCCTTTGTCCCAACCAACACCAAACAAGCTCTGTCAAACATGCTACAGCGGCGCTCAGGCGCCATGATGCAGCCGCCTTCTCTTCATGCAATCACATCGCAGCAGCAGTTGATACAGATGAAGCTTCTGCAGCAGCAGCAGCAACAGCGACTTCTCAGGCAAGCCCAGACTCGGCCTTTCCAACAGGGCCAGCCGGGGGACCAGGCTGCTCTCTTTGCTGCGCAAGCACGGCCCTCCCCTCAGCTCCCTCAGTATCCAGGGCTGCAGCAAGCACAGACCATGCCACAGGGCTATACAATGTATGGGACACAGATGCCTTTGCAGCAGACATCGCAGCAGCAGGCTGGCAGTGTGGTCCTGTCTCCCAGCTATAACTCCAGAGCCTATCCGGCCGCACATTCCAACCCCGTGCTAATGGAAAGACTCAGACAGATTCAGCAGCAGCCGAGTGGCTATGTTCAGCAGCAGGCCTCGCCGTACCTGCAGCCCCTGACTGGCTCTCAGAGACTGAACCATCAGGCTCTACAGCAGAGCCCTCTGGTGGGCGGGGGAATTGATGCTGTGCTGACTTCTGCACATCCAAACCTTCCCTCCGTGCCCCTGCCTCAGGATCCCATGAGACCCAGACAGCCGCAAGTTCGACAGCAGCAGAGACTCCTCCAGATGCAGCAGCCCCAGCAGCCCCAGCCCCAGCAGCCTCCCCAGCCCCAGCAGTCCTCGCAGTCCCAGAGTCAGACCCTTGGTCTCCAAGCAATGCAGCCCCAGCAGCCCTTGTTTCCCAGGCAAGGCTTGCAGCAGACCCAGCAGCAGCAGCAGACGGCCGCCTTGGTGCGGCAGCTCCAGAAGCAGCTTTCCAGCAACCAGCCACAGCAAGGAGTGACTCCGTATGGGCATCCTTCACACTTCTGA MAPSTPLLTVRGSEGLYMVNGPPHFTESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLQWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPEVEQAMKQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQYSDEFVQSAYLSRRLAYFCARRLSLLLSDSPNLLAAHSPHMMIGPNNSSIGAPSPGPPGPGMSPVQLAFSDFLSCAQHGPLVYGLSCMLQTVTLCCPSALVWNYSTNENKSANPGSPLDLLQVAPSSLPMPGGNTAFNQQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSSSLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPVGENADEHYSKDHDVKMEEQSIMAHMGIDSGTTNIFDEVDKSDFKTDFGSEFPIFSPMPGESCENANTSLGRRMSVNCEKLVKREKPRELIFPSNYDLLRHLQYATHFPIPLDESSSHECNQRTILLYGVGKERDEARHQLKKITKDILKILNKKSTTETGVGDEGQKARKNKQETFPTLETVFTKLQLLSYFDQHQVTSQISNNVLEQITSFASGTSYHLPLAHHIQLIFDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPDQTAQVFEGLCGVVKHVVNPSECSSPERCILAYLYDLYVSCSHLRSKFGDLFSSACSKVKQTIYNNVMPANSNLRWDPDFMMDFIENPSARSINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCSSNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLLLHLFRAPQACFLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNNSVSSLKNDDFTMRGLRCDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNSSNSGMSLFNPNSIGSADTSSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHLGSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQMMHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSEENKRAYMNLVKKLKKELGDKRSESIDKVRQLLPLPKQTCDVITCEPMGSLIDTKGNKIAGFDSIDKKQGLQVSTKQKVSPWDLFEGQKNPAPLSWAWFGTVRVDRRVIKYEEQHHLLLYHTHPMPKPRSYYLQPLPLPPEEEEEEPTSPVSQEPERKSAELSDQGKTTTDEEKKTKGRKRKTKSSSRVDEYPQSNIYRVPPNYSPISSQMMHHPQSTLWGYNLVGQPQQPGFFLQNQSLTPGGSRLDPAGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQQQRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQQTSQQQAGSVVLSPSYNSRAYPAAHSNPVLMERLRQIQQQPSGYVQQQASPYLQPLTGSQRLNHQALQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRPRQPQVRQQQRLLQMQQPQQPQPQQPPQPQQSSQSQSQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPYGHPSHF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33147 KIAA0232::MRFAP1 ENSG00000170871.12::ENSG00000179010.16 NCIH2196 SRR8616109 SRR8652086 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KIAA0232 ENSG00000170871.12 protein_coding + + chr4:6781375-6884170:+ chr4:6864183:+ chr4:6783102-6885897:+ chr4:6865910:+ MRFAP1 ENSG00000179010.16 protein_coding + + chr4:6640091-6642729:+ chr4:6640828:+ chr4:6641818-6644456:+ chr4:6642555:+ chr4:6870751,chr4:6870751 chr4:6640053,chr4:6640050 NA NA chr4:6872478,chr4:6872478 chr4:6641780,chr4:6641777 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.14Mb] 8 5 8 3.64 ONLY_REF_SPLICE YES_LDAS 0.1225 GT 1.6895 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match TRUE Stomach adenocarcinoma STOMACH no_match 6784568|6784568 FALSE|FALSE 6642555|6643457 TRUE|FALSE PARTIALLY 5UTR-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33152 EML4::ALK ENSG00000143924.19::ENSG00000171094.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2265 TRUE 4150 TRUE 1573 EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42264951:+ chr2:42396493-42559688:+ chr2:42492091:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr2:42266817,chr2:42266818 chr2:29225228,chr2:29225227 NA NA chr2:42493957,chr2:42493958 chr2:29448094,chr2:29448093 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF6183|8-66|0.00014^SlyX|21-68|5.2e-05^HELP|239-307|3.9e-32^WD40|314-342|1.7e-05^WD40|354-358|6^WD40|375-385|4.2^WD40|421-447|0.058^WD40|469-494|0.0063^ANAPC4_WD40|509-548|0.38^WD40|514-548|1.6e-06^WD40|599-631|4.5e-08^ANAPC4_WD40|616-694|0.00035^WD40|649-667|0.037^RMC1_N-PARTIAL|668-700~|4.5e-06^ANAPC4_WD40-PARTIAL|686-700~|0.0019^WD40-PARTIAL|689-700~|0.00012 none ["EML4:Oncogene"];["ALK:Oncogene","ALK:FoundationOne_panel","ALK:ArcherDX_panel"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr2:12.25Mb] 33 27 33 21.08 ONLY_REF_SPLICE YES_LDAS 0.511 GT 1.2419 AG 1.9086 ENST00000401738.3 1-700 ENST00000618119.4 2042-3732 chr2|+|[0]42169612-42169636[0]|[1]42245505-42245687[0]|[1]42256501-42256630[1]|[2]42261121-42261294[1]|[2]42263178-42263306[1]|[2]42264706-42264731[0]|[1]42264919-42264951[0]<==>chr2|-|[2]29193224-29193922[0]|[2]29196770-29196860[2]|[1]29197542-29197676[2]|[1]29207171-29207272[2]|[1]29209786-29209878[2]|[1]29213984-29214081[0]|[2]29220706-29220835[2]|[1]29222344-29222408[0]|[2]29222517-29222607[2]|[1]29223342-29223528[1] atggacggtttcgccggcagtctcgatgatagtatttctgctgcaagtacttctgatgttcaagatcgcctgtcagctcttgagtcacgagttcagcaacaagaagatgaaatcactgtgctaaaggcggctttggctgatgttttgaggcgtcttgcaatctctgaagatcatgtggcctcagtgaaaaaatcagtctcaagtaaaggccaaccaagccctcgagcagttattcccatgtcctgtataaccaatggaagtggtgcaaacagaaaaccaagtcataccagtgctgtctcaattgcaggaaaagaaactctttcatctgctgctaaaagtggtacagaaaaaaagaaagaaaaaccacaaggacagagagaaaaaaaagaggaatctcattctaatgatcaaagtccacaaattcgagcatcaccttctccccagccctcttcacaacctctccaaatacacagacaaactccagaaagcaagaatgctactcccaccaaaagcataaaacgaccatcaccagctgaaaagtcacataattcttgggaaaattcagatgatagccgtaataaattgtcgaaaataccttcaacacccaaattaataccaaaagttaccaaaactgcagacaagcataaagatgtcatcatcaaccaagcaaaaatgtcaactcgcgaaaaaaacagccaagTGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCGGGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAACGACCCAAGCCCCCTGCAAGTGGCTGTGAAGACGCTGCCTGAAGTGTGCTCTGAACAGGACGAACTGGATTTCCTCATGGAAGCCCTGATCATCAGCAAATTCAACCACCAGAACATTGTTCGCTGCATTGGGGTGAGCCTGCAATCCCTGCCCCGGTTCATCCTGCTGGAGCTCATGGCGGGGGGAGACCTCAAGTCCTTCCTCCGAGAGACCCGCCCTCGCCCGAGCCAGCCCTCCTCCCTGGCCATGCTGGACCTTCTGCACGTGGCTCGGGACATTGCCTGTGGCTGTCAGTATTTGGAGGAAAACCACTTCATCCACCGAGACATTGCTGCCAGAAACTGCCTCTTGACCTGTCCAGGCCCTGGAAGAGTGGCCAAGATTGGAGACTTCGGGATGGCCCGAGACATCTACAGGGCGAGCTACTATAGAAAGGGAGGCTGTGCCATGCTGCCAGTTAAGTGGATGCCCCCAGAGGCCTTCATGGAAGGAATATTCACTTCTAAAACAGACACATGGTCCTTTGGAGTGCTGCTATGGGAAATCTTTTCTCTTGGATATATGCCATACCCCAGCAAAAGCAACCAGGAAGTTCTGGAGTTTGTCACCAGTGGAGGCCGGATGGACCCACCCAAGAACTGCCCTGGGCCTGTATACCGGATAATGACTCAGTGCTGGCAACATCAGCCTGAAGACAGGCCCAACTTTGCCATCATTTTGGAGAGGATTGAATACTGCACCCAGGACCCGGATGTAATCAACACCGCTTTGCCGATAGAATATGGTCCACTTGTGGAAGAGGAAGAGAAAGTGCCTGTGAGGCCCAAGGACCCTGAGGGGGTTCCTCCTCTCCTGGTCTCTCAACAGGCAAAACGGGAGGAGGAGCGCAGCCCAGCTGCCCCACCACCTCTGCCTACCACCTCCTCTGGCAAGGCTGCAAAGAAACCCACAGCTGCAGAGATCTCTGTTCGAGTCCCTAGAGGGCCGGCCGTGGAAGGGGGACACGTGAATATGGCATTCTCTCAGTCCAACCCTCCTTCGGAGTTGCACAAGGTCCACGGATCCAGAAACAAGCCCACCAGCTTGTGGAACCCAACGTACGGCTCCTGGTTTACAGAGAAACCCACCAAAAAGAATAATCCTATAGCAAAGAAGGAGCCACACGACAGGGGTAACCTGGGGCTGGAGGGAAGCTGTACTGTCCCACCTAACGTTGCAACTGGGAGACTTCCGGGGGCCTCACTGCTCCTAGAGCCCTCTTCGCTGACTGCCAATATGAAGGAGGTACCTCTGTTCAGGCTACGTCACTTCCCTTGTGGGAATGTCAATTACGGCTACCAGCAACAGGGCTTGCCCTTAGAAGCCGCTACTGCCCCTGGAGCTGGTCATTACGAGGATACCATTCTGAAAAGCAAGAATAGCATGAACCAGCCTGGGCCCTGA MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSVSSKGQPSPRAVIPMSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSGTEKKKEKPQGQREKKEESHSNDQSPQIRASPSPQPSSQPLQIHRQTPESKNATPTKSIKRPSPAEKSHNSWENSDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQAKMSTREKNSQVYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPLVEEEEKVPVRPKDPEGVPPLLVSQQAKREEERSPAAPPPLPTTSSGKAAKKPTAAEISVRVPRGPAVEGGHVNMAFSQSNPPSELHKVHGSRNKPTSLWNPTYGSWFTEKPTKKNNPIAKKEPHDRGNLGLEGSCTVPPNVATGRLPGASLLLEPSSLTANMKEVPLFRLRHFPCGNVNYGYQQQGLPLEAATAPGAGHYEDTILKSKNSMNQPGP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Lung,Breast,Large_intestine,Intrathoracal,Thyroid,Soft_tissue,Uterus_corpus,Kidney,Salivary_gland,Liver,Gallbladder/Biliary_system,Pleura,Skin,Brain,Ovary exact TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Thyroid carcinoma KIDNEY,LUNG,LUNG,LUNG,LUNG,LUNG,THYROID exact 42472827|42472827,42492091|42491871,42491871,42492091|42491871,42522656,42552694,42492091|42491871|42491871|42492091 FALSE|FALSE,TRUE|FALSE,FALSE,TRUE|FALSE,FALSE,FALSE,TRUE|FALSE|FALSE|TRUE 29446394|29445473,29446394|29446394,29446394,29446394|29446394,29446394,29446394,29449940|29449940|29450538|29450538 TRUE|FALSE,TRUE|TRUE,TRUE,TRUE|TRUE,TRUE,TRUE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,YES,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 33154 ALK::PTPN3 ENSG00000171094.18::ENSG00000070159.14 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2268 FALSE NA FALSE NA ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29275099:- chr2:29415640-30144452:- chr2:29497965:- PTPN3 ENSG00000070159.14 protein_coding - - chr9:109375466-109498313:- chr9:109457399:- chr9:112137746-112260593:- chr9:112219679:- chr2:29266948,chr2:29266958 chr9:109462844,chr9:109462851 NA NA chr2:29489814,chr2:29489824 chr9:112225124,chr9:112225131 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MAM|282-425|3.2e-09^Ldl_recept_a|439-471|2.6e-05^FXa_inhibition|468-481|1.5^MAM|480-634|2.4e-26^Nup96|505-605|0.00016^Gly_rich_2|704-750|0.34^Gly_rich|733-961|4.6e-16^Gly_rich_2|815-956|3.8e-05^FXa_inhibition|989-1021|3.3e-05^PK_Tyr_Ser-Thr|1116-1382|1.4e-93^Pkinase|1119-1381|3.8e-36 FERM_M-PARTIAL|~139-222|1.4e-30^FERM_C|227-312|6.4e-31^Y_phosphatase|279-332|0.43^FERM_M|307-327|5.8^PDZ|511-594|4.9e-22^PDZ_6|536-585|3.6e-06^Y_phosphatase3|593-616|4.3^Y_phosphatase|670-899|2.9e-86^DSPc|775-854|8.1e-10^PTPlike_phytase|806-855|2.9e-07^Y_phosphatase3|823-855|3.4e-07 ["ALK:Oncogene","ALK:FoundationOne_panel","ALK:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr2--chr9] 30 6 30 6 ONLY_REF_SPLICE YES_LDAS 0.3401 GT 1.9086 AG 1.7465 ENST00000389048.8 1-2041 ENST00000374541.4 139-2742 chr2|-|[0]29275099-29275227[1]|[0]29275402-29275496[2]|[1]29296888-29297057[0]|[2]29318304-29318404[1]|[0]29320751-29320882[1]|[0]29328350-29328481[1]|[0]29383732-29383859[2]|[1]29531915-29532116[1]|[0]29694850-29695014[1]|[0]29717578-29717697[1]|[0]29919993-29920659[0]<==>chr9|-|[2]109379556-109379633[0]|[2]109381652-109381787[2]|[1]109382302-109382447[0]|[2]109383423-109383551[0]|[2]109389233-109389379[0]|[2]109391138-109391199[1]|[0]109391471-109391561[0]|[2]109404448-109404608[1]|[0]109406462-109406618[0]|[2]109408321-109408377[0]|[2]109409999-109410076[0]|[2]109410229-109410415[2]|[1]109420424-109420600[2]|[1]109422718-109422852[2]|[1]109426950-109427122[0]|[2]109428621-109428684[2]|[1]109433073-109433161[0]|[2]109436883-109436970[2]|[1]109438114-109438234[1]|[0]109445240-109445292[2]|[1]109448811-109448855[2]|[1]109454496-109454574[1]|[0]109457173-109457215[0]|[2]109457292-109457399[0] atgggagccatcgggctcctgtggctcctgccgctgctgctttccacggcagctgtgggctccgggatggggaccggccagcgcgcgggctccccagctgcggggccgccgctgcagccccgggagccactcagctactcgcgcctgcagaggaagagtctggcagttgacttcgtggtgccctcgctcttccgtgtctacgcccgggacctactgctgccaccatcctcctcggagctgaaggctggcaggcccgaggcccgcggctcgctagctctggactgcgccccgctgctcaggttgctggggccggcgccgggggtctcctggaccgccggttcaccagccccggcagaggcccggacgctgtccagggtgctgaagggcggctccgtgcgcaagctccggcgtgccaagcagttggtgctggagctgggcgaggaggcgatcttggagggttgcgtcgggccccccggggaggcggctgtggggctgctccagttcaatctcagcgagctgttcagttggtggattcgccaaggcgaagggcgactgaggatccgcctgatgcccgagaagaaggcgtcggaagtgggcagagagggaaggctgtccgcggcaattcgcgcctcccagccccgccttctcttccagatcttcgggactggtcatagctccttggaatcaccaacaaacatgccttctccttctcctgattattttacatggaatctcacctggataatgaaagactccttccctttcctgtctcatcgcagccgatatggtctggagtgcagctttgacttcccctgtgagctggagtattcccctccactgcatgacctcaggaaccagagctggtcctggcgccgcatcccctccgaggaggcctcccagatggacttgctggatgggcctggggcagagcgttctaaggagatgcccagaggctcctttctccttctcaacacctcagctgactccaagcacaccatcctgagtccgtggatgaggagcagcagtgagcactgcacactggccgtctcggtgcacaggcacctgcagccctctggaaggtacattgcccagctgctgccccacaacgaggctgcaagagagatcctcctgatgcccactccagggaagcatggttggacagtgctccagggaagaatcgggcgtccagacaacccatttcgagtggccctggaatacatctccagtggaaaccgcagcttgtctgcagtggacttctttgccctgaagaactgcagtgaaggaacatccccaggctccaagatggccctgcagagctccttcacttgttggaatgggacagtcctccagcttgggcaggcctgtgacttccaccaggactgtgcccagggagaagatgagagccagatgtgccggaaactgcctgtgggtttttactgcaactttgaagatggcttctgtggctggacccaaggcacactgtcaccccacactcctcaatggcaggtcaggaccctaaaggatgcccggttccaggaccaccaagaccatgctctattgctcagtaccactgatgtccccgcttctgaaagtgctacagtgaccagtgctacgtttcctgcaccgatcaagagctctccatgtgagctccgaatgtcctggctcattcgtggagtcttgaggggaaacgtgtccttggtgctagtggagaacaaaaccgggaaggagcaaggcaggatggtctggcatgtcgccgcctatgaaggcttgagcctgtggcagtggatggtgttgcctctcctcgatgtgtctgacaggttctggctgcagatggtcgcatggtggggacaaggatccagagccatcgtggcttttgacaatatctccatcagcctggactgctacctcaccattagcggagaggacaagatcctgcagaatacagcacccaaatcaagaaacctgtttgagagaaacccaaacaaggagctgaaacccggggaaaattcaccaagacagacccccatctttgaccctacagAAACAAGACACTGGCCAGGTTCTTCTGGATATGGTGCACAACCACCTGGGTGTGACTGAAAAGGAATATTTTGGTTTACAGCATGATGACGACTCCGTGGACTCTCCTAGATGGCTGGAAGCAAGCAAAGCCATCAGGAAGCAGTTAAAAGGAGGTTTCCCCTGTACCCTGCATTTTCGAGTAAGATTTTTTATACCTGATCCCAACACACTGCAGCAAGAACAAACCAGGCACTTGTATTTCTTACAACTGAAGATGGATATTTGCGAAGGAAGGTTAACCTGCCCTCTTAACTCAGCAGTGGTTCTAGCGTCCTATGCCGTACAATCTCATTTTGGAGACTATAATTCTTCCATACATCATCCAGGCTATCTTTCCGATAGTCACTTTATACCCGATCAAAATGAGGACTTTTTAACAAAAGTCGAATCTCTGCATGAGCAGCACAGTGGGCTAAAACAATCAGAAGCAGAATCCTGCTATATCAACATAGCGCGGACCCTCGACTTCTATGGAGTAGAACTGCACAGTGGTAGGGATCTGCACAATTTAGACCTAATGATTGGAATTGCTTCCGCGGGTGTTGCTGTGTACCGAAAATACATTTGCACAAGTTTCTATCCTTGGGTGAACATTCTCAAAATTTCTTTCAAAAGGAAAAAGTTCTTCATACATCAGCGACAGAAACAGGCTGAATCCAGGGAACATATTGTGGCCTTCAACATGCTGAATTACCGATCTTGCAAAAACTTGTGGAAATCCTGTGTTGAGCACCATACGTTCTTTCAGGCAAAGAAGCTACTACCTCAGGAAAAGAATGTTCTGTCTCAGTACTGGACTATGGGCTCTCGGAACACCAAAAAGTCGGTAAATAACCAATATTGCAAAAAGGTGATTGGCGGGATGGTGTGGAACCCAGCCATGCGGAGATCCTTATCAGTGGAGCACTTAGAAACCAAGAGTCTGCCTTCTCGTTCCCCTCCCATTACTCCCAACTGGCGAAGTCCTCGGCTCCGGCACGAAATCCGAAAGCCACGCCACTCTTCTGCAGATAACCTTGCAAATGAAATGACCTACATCACGGAAACGGAAGATGTATTTTACACGTACAAGGGCTCTCTGGCCCCTCAAGACAGCGATTCTGAAGTTTCTCAGAACCGAAGCCCGCACCAAGAGAGTTTATCCGAGAACAATCCGGCACAAAGCTACCTGACCCAGAAGTCATCCAGTTCTGTGTCTCCATCTTCAAATGCTCCAGGCTCCTGCTCACCTGACGGCGTTGATCAGCAGCTCTTAGATGACTTCCACAGGGTGACCAAAGGGGGCTCCACCGAGGACGCCAGCCAGTACTACTGTGACAAGAATGATAATGGTGACAGCTACTTAGTCTTGATCCGTATCACACCAGATGAAGATGGAAAATTTGGATTTAATCTTAAGGGAGGAGTGGATCAAAAGATGCCTCTTGTGGTATCAAGGATAAACCCAGAGTCACCTGCGGACACCTGCATTCCTAAGCTGAACGAAGGGGATCAAATCGTGTTAATCAATGGCCGGGACATCTCAGAACACACGCATGACCAAGTGGTGATGTTCATCAAAGCCAGCCGGGAGTCCCACTCACGGGAGCTGGCCCTGGTGATCAGGAGGAGAGCTGTCCGCTCATTTGCTGACTTCAAGTCTGAAGATGAACTGAACCAGCTTTTCCCCGAAGCCATTTTCCCCATGTGTCCGGAGGGTGGGGACACTTTGGAGGGATCCATGGCACAGCTAAAGAAGGGCCTCGAAAGCGGGACGGTGCTGATCCAGTTTGAGCAACTCTACAGAAAAAAGCCAGGTTTGGCCATCACGTTTGCAAAGCTGCCTCAAAATTTGGACAAAAACCGATATAAAGATGTGCTGCCTTATGACACCACCCGGGTATTATTGCAGGGAAATGAAGATTATATTAATGCAAGTTACGTGAACATGGAAATTCCTGCTGCTAACCTTGTGAACAAGTACATCGCCACTCAGGGGCCCCTGCCGCATACCTGTGCACAGTTTTGGCAGGTTGTCTGGGATCAGAAGTTGTCACTCATTGTCATGTTGACGACTCTCACAGAACGAGGGCGGACCAAATGTCACCAGTACTGGCCAGATCCCCCCGACGTCATGAACCACGGCGGCTTTCACATCCAGTGTCAGTCAGAGGACTGCACCATCGCCTATGTGTCCCGAGAAATGCTGGTCACAAACACCCAGACCGGGGAAGAACACACAGTGACACATCTCCAGTACGTCGCATGGCCTGACCACGGTGTGCCCGATGACTCCTCCGACTTTCTGGAATTTGTAAACTATGTGAGGTCTCTGAGAGTGGACAGCGAGCCCGTCCTAGTTCACTGCAGTGCTGGAATAGGTCGAACCGGTGTGTTGGTCACTATGGAAACAGCCATGTGCCTAACTGAGAGGAACCTGCCCATTTACCCACTGGATATTGTCCGAAAAATGCGAGACCAGCGCGCCATGATGGTGCAGACATCAAGCCAGTACAAGTTTGTGTGTGAAGCGATTCTTCGTGTGTATGAAGAAGGTTTAGTCCAAATGCTGGATCCTAGTTAA MGAIGLLWLLPLLLSTAAVGSGMGTGQRAGSPAAGPPLQPREPLSYSRLQRKSLAVDFVVPSLFRVYARDLLLPPSSSELKAGRPEARGSLALDCAPLLRLLGPAPGVSWTAGSPAPAEARTLSRVLKGGSVRKLRRAKQLVLELGEEAILEGCVGPPGEAAVGLLQFNLSELFSWWIRQGEGRLRIRLMPEKKASEVGREGRLSAAIRASQPRLLFQIFGTGHSSLESPTNMPSPSPDYFTWNLTWIMKDSFPFLSHRSRYGLECSFDFPCELEYSPPLHDLRNQSWSWRRIPSEEASQMDLLDGPGAERSKEMPRGSFLLLNTSADSKHTILSPWMRSSSEHCTLAVSVHRHLQPSGRYIAQLLPHNEAAREILLMPTPGKHGWTVLQGRIGRPDNPFRVALEYISSGNRSLSAVDFFALKNCSEGTSPGSKMALQSSFTCWNGTVLQLGQACDFHQDCAQGEDESQMCRKLPVGFYCNFEDGFCGWTQGTLSPHTPQWQVRTLKDARFQDHQDHALLLSTTDVPASESATVTSATFPAPIKSSPCELRMSWLIRGVLRGNVSLVLVENKTGKEQGRMVWHVAAYEGLSLWQWMVLPLLDVSDRFWLQMVAWWGQGSRAIVAFDNISISLDCYLTISGEDKILQNTAPKSRNLFERNPNKELKPGENSPRQTPIFDPTETRHWPGSSGYGAQPPGCD*KGIFWFTA**RLRGLS*MAGSKQSHQEAVKRRFPLYPAFSSKIFYT*SQHTAARTNQALVFLTTEDGYLRRKVNLPS*LSSGSSVLCRTISFWRL*FFHTSSRLSFR*SLYTRSK*GLFNKSRISA*AAQWAKTIRSRILLYQHSADPRLLWSRTAQW*GSAQFRPNDWNCFRGCCCVPKIHLHKFLSLGEHSQNFFQKEKVLHTSATETG*IQGTYCGLQHAELPILQKLVEILC*APYVLSGKEATTSGKECSVSVLDYGLSEHQKVGK*PILQKGDWRDGVEPSHAEILISGALRNQESAFSFPSHYSQLAKSSAPARNPKATPLFCR*PCK*NDLHHGNGRCILHVQGLSGPSRQRF*SFSEPKPAPREFIREQSGTKLPDPEVIQFCVSIFKCSRLLLT*RR*SAALR*LPQGDQRGLHRGRQPVLL*QE**W*QLLSLDPYHTR*RWKIWI*S*GRSGSKDASCGIKDKPRVTCGHLHS*AERRGSNRVNQWPGHLRTHA*PSGDVHQSQPGVPLTGAGPGDQEESCPLIC*LQV*R*TEPAFPRSHFPHVSGGWGHFGGIHGTAKEGPRKRDGADPV*ATLQKKARFGHHVCKAASKFGQKPI*RCAAL*HHPGIIAGK*RLY*CKLREHGNSCC*PCEQVHRHSGAPAAYLCTVLAGCLGSEVVTHCHVDDSHRTRADQMSPVLARSPRRHEPRRLSHPVSVRGLHHRLCVPRNAGHKHPDRGRTHSDTSPVRRMA*PRCAR*LLRLSGICKLCEVSESGQRARPSSLQCWNRSNRCVGHYGNSHVPN*EEPAHLPTGYCPKNARPARHDGADIKPVQVCV*SDSSCV*RRFSPNAGS*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE ALK tyrosine kinase receptor TK ALK Q9UM73 FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification FALSE NA NA NA NA NA NA NA NA NA 33156 KATNAL1::ZC3H13 ENSG00000102781.14::ENSG00000123200.17 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2269 FALSE NA FALSE NA KATNAL1 ENSG00000102781.14 protein_coding - - chr13:30202630-30307551:- chr13:30307331:- chr13:30776767-30881688:- chr13:30881468:- ZC3H13 ENSG00000123200.17 protein_coding - - chr13:45954465-46052759:- chr13:45989097:- chr13:46528600-46626894:- chr13:46563232:- chr13:30284630,chr13:30284634 chr13:46001761,chr13:46001762 NA NA chr13:30858767,chr13:30858771 chr13:46575896,chr13:46575897 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:15.65Mb] 24 3 24 2.32 ONLY_REF_SPLICE YES_LDAS 0.2486 GT 1.8062 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33160 EML4::ALK ENSG00000143924.19::ENSG00000171094.18 NCIH2228 SRR8616111 SRR8652084 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2266 TRUE 4150 TRUE 1573 EML4 ENSG00000143924.19 protein_coding + + chr2:42169353-42332548:+ chr2:42264731:+ chr2:42396493-42559688:+ chr2:42491871:+ ALK ENSG00000171094.18 protein_coding - - chr2:29192774-29921586:- chr2:29223528:- chr2:29415640-30144452:- chr2:29446394:- chr2:42266817,chr2:42266818 chr2:29225228,chr2:29225227 NA NA chr2:42493957,chr2:42493958 chr2:29448094,chr2:29448093 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF6183|8-66|0.00014^SlyX|21-68|5.2e-05^HELP|239-307|3.9e-32^WD40|314-342|1.7e-05^WD40|354-358|6^WD40|375-385|4.2^WD40|421-447|0.058^WD40|469-494|0.0063^ANAPC4_WD40|509-548|0.38^WD40|514-548|1.6e-06^WD40|599-631|4.5e-08^ANAPC4_WD40-PARTIAL|616-667~|0.00035^WD40|649-667|0.037 none ["EML4:Oncogene"];["ALK:Oncogene","ALK:FoundationOne_panel","ALK:ArcherDX_panel"];["ChimerKB","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","HaasMedCancer","Klijn_CellLines","chimerdb_pubmed","DEEPEST2019","GUO2018CR_TCGA","ChimerPub","TumorFusionsNAR2018","Cosmic"];INTRACHROMOSOMAL[chr2:12.25Mb] 14 22 14 5.92 ONLY_REF_SPLICE YES_LDAS 0.1882 GT 1.7819 AG 1.9086 ENST00000401738.3 1-667 ENST00000618119.4 2042-3732 chr2|+|[0]42169612-42169636[0]|[1]42245505-42245687[0]|[1]42256501-42256630[1]|[2]42261121-42261294[1]|[2]42263178-42263306[1]|[2]42264706-42264731[0]<==>chr2|-|[2]29193224-29193922[0]|[2]29196770-29196860[2]|[1]29197542-29197676[2]|[1]29207171-29207272[2]|[1]29209786-29209878[2]|[1]29213984-29214081[0]|[2]29220706-29220835[2]|[1]29222344-29222408[0]|[2]29222517-29222607[2]|[1]29223342-29223528[1] atggacggtttcgccggcagtctcgatgatagtatttctgctgcaagtacttctgatgttcaagatcgcctgtcagctcttgagtcacgagttcagcaacaagaagatgaaatcactgtgctaaaggcggctttggctgatgttttgaggcgtcttgcaatctctgaagatcatgtggcctcagtgaaaaaatcagtctcaagtaaaggccaaccaagccctcgagcagttattcccatgtcctgtataaccaatggaagtggtgcaaacagaaaaccaagtcataccagtgctgtctcaattgcaggaaaagaaactctttcatctgctgctaaaagtggtacagaaaaaaagaaagaaaaaccacaaggacagagagaaaaaaaagaggaatctcattctaatgatcaaagtccacaaattcgagcatcaccttctccccagccctcttcacaacctctccaaatacacagacaaactccagaaagcaagaatgctactcccaccaaaagcataaaacgaccatcaccagctgaaaagtcacataattcttgggaaaattcagatgatagccgtaataaattgtcgaaaataccttcaacacccaaattaataccaaaagttaccaaaactgcagacaagcataaagatgtcatcatcaaccaagTGTACCGCCGGAAGCACCAGGAGCTGCAAGCCATGCAGATGGAGCTGCAGAGCCCTGAGTACAAGCTGAGCAAGCTCCGCACCTCGACCATCATGACCGACTACAACCCCAACTACTGCTTTGCTGGCAAGACCTCCTCCATCAGTGACCTGAAGGAGGTGCCGCGGAAAAACATCACCCTCATTCGGGGTCTGGGCCATGGCGCCTTTGGGGAGGTGTATGAAGGCCAGGTGTCCGGAATGCCCAACGACCCAAGCCCCCTGCAAGTGGCTGTGAAGACGCTGCCTGAAGTGTGCTCTGAACAGGACGAACTGGATTTCCTCATGGAAGCCCTGATCATCAGCAAATTCAACCACCAGAACATTGTTCGCTGCATTGGGGTGAGCCTGCAATCCCTGCCCCGGTTCATCCTGCTGGAGCTCATGGCGGGGGGAGACCTCAAGTCCTTCCTCCGAGAGACCCGCCCTCGCCCGAGCCAGCCCTCCTCCCTGGCCATGCTGGACCTTCTGCACGTGGCTCGGGACATTGCCTGTGGCTGTCAGTATTTGGAGGAAAACCACTTCATCCACCGAGACATTGCTGCCAGAAACTGCCTCTTGACCTGTCCAGGCCCTGGAAGAGTGGCCAAGATTGGAGACTTCGGGATGGCCCGAGACATCTACAGGGCGAGCTACTATAGAAAGGGAGGCTGTGCCATGCTGCCAGTTAAGTGGATGCCCCCAGAGGCCTTCATGGAAGGAATATTCACTTCTAAAACAGACACATGGTCCTTTGGAGTGCTGCTATGGGAAATCTTTTCTCTTGGATATATGCCATACCCCAGCAAAAGCAACCAGGAAGTTCTGGAGTTTGTCACCAGTGGAGGCCGGATGGACCCACCCAAGAACTGCCCTGGGCCTGTATACCGGATAATGACTCAGTGCTGGCAACATCAGCCTGAAGACAGGCCCAACTTTGCCATCATTTTGGAGAGGATTGAATACTGCACCCAGGACCCGGATGTAATCAACACCGCTTTGCCGATAGAATATGGTCCACTTGTGGAAGAGGAAGAGAAAGTGCCTGTGAGGCCCAAGGACCCTGAGGGGGTTCCTCCTCTCCTGGTCTCTCAACAGGCAAAACGGGAGGAGGAGCGCAGCCCAGCTGCCCCACCACCTCTGCCTACCACCTCCTCTGGCAAGGCTGCAAAGAAACCCACAGCTGCAGAGATCTCTGTTCGAGTCCCTAGAGGGCCGGCCGTGGAAGGGGGACACGTGAATATGGCATTCTCTCAGTCCAACCCTCCTTCGGAGTTGCACAAGGTCCACGGATCCAGAAACAAGCCCACCAGCTTGTGGAACCCAACGTACGGCTCCTGGTTTACAGAGAAACCCACCAAAAAGAATAATCCTATAGCAAAGAAGGAGCCACACGACAGGGGTAACCTGGGGCTGGAGGGAAGCTGTACTGTCCCACCTAACGTTGCAACTGGGAGACTTCCGGGGGCCTCACTGCTCCTAGAGCCCTCTTCGCTGACTGCCAATATGAAGGAGGTACCTCTGTTCAGGCTACGTCACTTCCCTTGTGGGAATGTCAATTACGGCTACCAGCAACAGGGCTTGCCCTTAGAAGCCGCTACTGCCCCTGGAGCTGGTCATTACGAGGATACCATTCTGAAAAGCAAGAATAGCATGAACCAGCCTGGGCCCTGA MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSVSSKGQPSPRAVIPMSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSGTEKKKEKPQGQREKKEESHSNDQSPQIRASPSPQPSSQPLQIHRQTPESKNATPTKSIKRPSPAEKSHNSWENSDDSRNKLSKIPSTPKLIPKVTKTADKHKDVIINQVYRRKHQELQAMQMELQSPEYKLSKLRTSTIMTDYNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPDVINTALPIEYGPLVEEEEKVPVRPKDPEGVPPLLVSQQAKREEERSPAAPPPLPTTSSGKAAKKPTAAEISVRVPRGPAVEGGHVNMAFSQSNPPSELHKVHGSRNKPTSLWNPTYGSWFTEKPTKKNNPIAKKEPHDRGNLGLEGSCTVPPNVATGRLPGASLLLEPSSLTANMKEVPLFRLRHFPCGNVNYGYQQQGLPLEAATAPGAGHYEDTILKSKNSMNQPGP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE ALK tyrosine kinase receptor TK ALK Q9UM73 TRUE Lung,Breast,Large_intestine,Intrathoracal,Thyroid,Soft_tissue,Uterus_corpus,Kidney,Salivary_gland,Liver,Gallbladder/Biliary_system,Pleura,Skin,Brain,Ovary exact TRUE Kidney renal papillary cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Thyroid carcinoma KIDNEY,LUNG,LUNG,LUNG,LUNG,LUNG,THYROID exact 42472827|42472827,42492091|42491871,42491871,42492091|42491871,42522656,42552694,42492091|42491871|42491871|42492091 FALSE|FALSE,FALSE|TRUE,TRUE,FALSE|TRUE,FALSE,FALSE,FALSE|TRUE|TRUE|FALSE 29446394|29445473,29446394|29446394,29446394,29446394|29446394,29446394,29446394,29449940|29449940|29450538|29450538 TRUE|FALSE,TRUE|TRUE,TRUE,TRUE|TRUE,TRUE,TRUE,FALSE|FALSE|FALSE|FALSE PARTIALLY,YES,YES,YES,YES,YES,PARTIALLY In-frame,In-frame,In-frame,In-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA TRUE echinoderm microtubule associated protein like 4 1 Yes NSCLC epithelial fusion translocation TRUE anaplastic lymphoma kinase (Ki-1) 1 Yes ALCL, NSCLC, neuroblastoma, inflammatory myofibroblastic tumour, Spitzoid tumour neuroblastoma familial neuroblastoma leukaemia_lymphoma, epithelial, mesenchymal oncogene, fusion translocation, missense, amplification 33167 PPM1H::CACNA1C ENSG00000111110.12::ENSG00000151067.23 NCIH2227 SRR8616112 SRR8652085 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2272 FALSE NA FALSE NA PPM1H ENSG00000111110.12 protein_coding - - chr12:62643994-62935150:- chr12:62801816:- chr12:63037774-63328930:- chr12:63195596:- CACNA1C ENSG00000151067.23 protein_coding + + chr12:1970772-2697950:+ chr12:2448976:+ chr12:2079938-2807116:+ chr12:2558142:+ chr12:62798424,chr12:62798426 chr12:2180995,chr12:2180993 NA NA chr12:63192204,chr12:63192206 chr12:2290161,chr12:2290159 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PP2C|120-175|0.0013^PP2C|240-316|7e-16^PP2C_2|263-463|2.5e-05^SpoIIE|276-299|0.031^PP2C|379-474|8.1e-16^SpoIIE|422-469|0.00035 Ion_trans-PARTIAL|~568-791|4.6e-68^PKD_channel-PARTIAL|~568-784|2e-07^DUF2985-PARTIAL|~568-597|0.034^EphA2_TM|681-696|4.3^DUF2985|756-783|0.15^EphA2_TM|773-802|4.4^CAC1F_C|792-827|3.8^Ion_trans|930-983|1.4e-11^Ion_trans|982-1226|1.7e-61^PKD_channel|1038-1101|1.4^EphA2_TM|1083-1115|2.3^DUF2985|1156-1168|4.6^DUF2985|1193-1212|0.12^PKD_channel|1194-1214|4.1^EphA2_TM|1198-1253|0.017^Ion_trans|1269-1351|3.7e-25^DUF2985|1273-1309|0.0011^PKD_channel|1297-1350|3.3e-05^PKD_channel|1353-1558|1.3e-09^Ion_trans|1354-1564|3.4e-55^GPHH|1574-1627|1.3e-32^Ca_chan_IQ|1637-1711|3.4e-33^CAC1F_C|1731-1767|1.5e-07^CAC1F_C|1927-2021|0.00015^CAC1F_C|2127-2201|6.1e-26 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:59.95Mb] 11 9 11 9 ONLY_REF_SPLICE YES_LDAS 0.2483 GT 1.8892 AG 1.7819 ENST00000228705.7 1-756 ENST00000682544.1 568-6756 chr12|-|[2]62801816-62802160[0]|[2]62832114-62832279[2]|[1]62934492-62934736[0]<==>chr12|+|[0]2448976-2449115[1]|[2]2457567-2457706[0]|[1]2486104-2486262[0]|[1]2493190-2493386[2]|[0]2504842-2504945[1]|[2]2512812-2512984[0]|[1]2549943-2550033[1]|[2]2556951-2556977[1]|[2]2566422-2566582[0]|[1]2567569-2567794[1]|[2]2581590-2581797[2]|[0]2582822-2582942[0]|[1]2584503-2584617[1]|[2]2585376-2585496[2]|[0]2585835-2585904[0]|[1]2593213-2593345[1]|[2]2595874-2596003[2]|[0]2597230-2597289[2]|[0]2597437-2597496[2]|[0]2601854-2601960[1]|[2]2605081-2605168[2]|[0]2605679-2605786[2]|[0]2606611-2606663[1]|[2]2606984-2607130[1]|[2]2608511-2608712[2]|[0]2610541-2610699[2]|[0]2611903-2612013[2]|[0]2633629-2633712[2]|[0]2634297-2634380[2]|[0]2648475-2648507[2]|[0]2651640-2651768[2]|[0]2653835-2653900[2]|[0]2655147-2655238[1]|[2]2664825-2664990[2]|[0]2665581-2665708[1]|[2]2666686-2666782[2]|[0]2668933-2669035[0]|[1]2674541-2674642[0]|[1]2677094-2677221[2]|[0]2677733-2677867[2]|[0]2679444-2679796[1]|[2]2681950-2682054[1]|[2]2682550-2682678[1]|[2]2685736-2685842[0]|[1]2686166-2686269[2]|[0]2688447-2688779[2]|[0]2690900-2691199[2] atgctcactcgagtgaaatctgccgtggccaatttcatgggcggcatcatggctggcagctcaggctccgagcacggcggcggcagctgcggaggctcggacctgcccctgcgtttcccctacgggcggccagagttcctggggctgtctcaggacgaggtggagtgcagcgccgaccacatcgcccgccccatcctcatcctcaaggagactcggcggctgccctgggccactggctacgcagaggttatcaatgccgggaagagcacacacaatgaagaccaagccagctgtgaggtgctcactgtgaagaagaaggcaggggccgtgacctcaaccccaaacaggaactcatccaagagacggtcctcccttcccaatggggaagggctgcagctgaaggagaactcggaatccgagggtgtttcctgccactattggtcgctgtttgacgggcacgcggggtccggggccgcggtggtggcgtcacgcctgctgcagcaccacatcacggagcagctgcaggacatcgtggacatcctgaagaactccgccgtcctgccccctacctgcctgggggaggagcctgagaacacgcccgccaacagccggactctgacccgggcagcctccctgcgcggaggggtgggggccccgggctcccccagcacgccccccacacgcttctttaccgagaagaagattccccatgagtgcctggtcatcggagcgcttgaaagtgcattcaaggaaatgGAACGAGTGGAATATCTCTTTCTCATAATTTTTACGGTGGAAGCGTTTTTAAAAGTAATCGCCTATGGACTCCTCTTTCACCCCAATGCCTACCTCCGCAACGGCTGGAACCTACTAGATTTTATAATTGTGGTTGTGGGGCTTTTTAGTGCAATTTTAGAACAAGCAACCAAAGCAGATGGGGCAAACGCTCTCGGAGGGAAAGGGGCCGGATTTGATGTGAAGGCGCTGAGGGCCTTCCGCGTGCTGCGCCCCCTGCGGCTGGTGTCCGGAGTCCCAAGTCTCCAGGTGGTCCTGAATTCCATCATCAAGGCCATGGTCCCCCTGCTGCACATCGCCCTGCTTGTGCTGTTTGTCATCATCATCTACGCCATCATCGGCTTGGAGCTCTTCATGGGGAAGATGCACAAGACCTGCTACAACCAGGAGGGCATAGCAGATGTTCCAGCAGAAGATGACCCTTCCCCTTGTGCGCTGGAAACGGGCCACGGGCGGCAGTGCCAGAACGGCACGGTGTGCAAGCCCGGCTGGGATGGTCCCAAGCACGGCATCACCAACTTTGACAACTTTGCCTTCGCCATGCTCACGGTGTTCCAGTGCATCACCATGGAGGGCTGGACGGACGTGCTGTACTGGGTCAATGATGCCGTAGGAAGGGACTGGCCCTGGATCTATTTTGTTACACTAATCATCATAGGGTCATTTTTTGTACTTAACTTGGTTCTCGGTGTGCTTAGCGGAGAGTTTTCCAAAGAGAGGGAGAAGGCCAAGGCCCGGGGAGATTTCCAGAAGCTGCGGGAGAAGCAGCAGCTAGAAGAGGATCTCAAAGGCTACCTGGATTGGATCACTCAGGCCGAAGACATCGATCCTGAGAATGAGGACGAAGGCATGGATGAGGAGAAGCCCCGAAACATGAGCATGCCCACCAGTGAGACCGAGTCCGTCAACACCGAAAACGTGGCTGGAGGTGACATCGAGGGAGAAAACTGCGGGGCCAGGCTGGCCCACCGGATCTCCAAGTCAAAGTTCAGCCGCTACTGGCGCCGGTGGAATCGGTTCTGCAGAAGGAAGTGCCGCGCCGCAGTCAAGTCTAATGTCTTCTACTGGCTGGTGATTTTCCTGGTGTTCCTCAACACGCTCACCATTGCCTCTGAGCACTACAACCAGCCCAACTGGCTCACAGAAGTCCAAGACACGGCAAACAAGGCCCTGCTGGCCCTGTTCACGGCAGAGATGCTCCTGAAGATGTACAGCCTGGGCCTGCAGGCCTACTTCGTGTCCCTCTTCAACCGCTTTGACTGCTTCGTCGTGTGTGGCGGCATCCTGGAGACCATCCTGGTGGAGACCAAGATCATGTCCCCACTGGGCATCTCCGTGCTCAGATGCGTCCGGCTGCTGAGGATTTTCAAGATCACGAGGTACTGGAACTCCTTGAGCAACCTGGTGGCATCCTTGCTGAACTCTGTGCGCTCCATCGCCTCCCTGCTCCTTCTCCTCTTCCTCTTCATCATCATCTTCTCCCTCCTGGGGATGCAGCTCTTTGGAGGAAAGTTCAACTTTGATGAGATGCAGACCCGGAGGAGCACATTCGATAACTTCCCCCAGTCCCTCCTCACTGTGTTTCAGATCCTGACCGGGGAGGACTGGAATTCGGTGATGTATGATGGGATCATGGCTTATGGCGGCCCCTCTTTTCCAGGGATGTTAGTCTGTATTTACTTCATCATCCTCTTCATCTGTGGAAACTATATCCTACTGAATGTGTTCTTGGCCATTGCTGTGGACAACCTGGCTGATGCTGAGAGCCTCACATCTGCCCAAAAGGAGGAGGAAGAGGAGAAGGAGAGAAAGAAGCTGGCCAGGACTGCCAGCCCAGAGAAGAAACAAGAGTTGGTGGAGAAGCCGGCAGTGGGGGAATCCAAGGAGGAGAAGATTGAGCTGAAATCCATCACGGCTGACGGAGAGTCTCCACCCGCCACCAAGATCAACATGGATGACCTCCAGCCCAATGAAAATGAGGATAAGAGCCCCTACCCCAACCCAGAAACTACAGGAGAAGAGGATGAGGAGGAGCCAGAGATGCCTGTCGGCCCTCGCCCACGACCACTCTCTGAGCTTCACCTTAAGGAAAAGGCAGTGCCCATGCCAGAAGCCAGCGCGTTTTTCATCTTCAGCTCTAACAACAGGTTTCGCCTCCAGTGCCACCGCATTGTCAATGACACGATCTTCACCAACCTGATCCTCTTCTTCATTCTGCTCAGCAGCATTTCCCTGGCTGCTGAGGACCCGGTCCAGCACACCTCCTTCAGGAACCATATTCTGTTTTATTTTGATATTGTTTTTACCACCATTTTCACCATTGAAATTGCTCTGAAGATCCTAGGCAATGCAGACTATGTCTTCACTAGTATCTTTACATTAGAAATTATCCTTAAGATGACTGCTTATGGGGCTTTCTTGCACAAGGGTTCTTTCTGCCGGAACTACTTCAACATCCTGGACCTGCTGGTGGTCAGCGTGTCCCTCATCTCCTTTGGCATCCAGTCCAGTGCAATCAATGTCGTGAAGATCTTGCGAGTCCTGCGAGTACTCAGGCCCCTGAGGGCCATCAACAGGGCCAAGGGGCTAAAGCATGTGGTTCAGTGTGTGTTTGTCGCCATCCGGACCATCGGGAACATCGTGATTGTCACCACCCTGCTGCAGTTCATGTTTGCCTGCATCGGGGTCCAGCTCTTCAAGGGAAAGCTGTACACCTGTTCAGACAGTTCCAAGCAGACAGAGGCGGAATGCAAGGGCAACTACATCACGTACAAAGACGGGGAGGTTGACCACCCCATCATCCAACCCCGCAGCTGGGAGAACAGCAAGTTTGACTTTGACAATGTTCTGGCAGCCATGATGGCCCTCTTCACCGTCTCCACCTTCGAAGGGTGGCCAGAGCTGCTGTACCGCTCCATCGACTCCCACACGGAAGACAAGGGCCCCATCTACAACTACCGTGTGGAGATCTCCATCTTCTTCATCATCTACATCATCATCATCGCCTTCTTCATGATGAACATCTTCGTGGGCTTCGTCATCGTCACCTTTCAGGAGCAGGGGGAGCAGGAGTACAAGAACTGTGAGCTGGACAAGAACCAGCGACAGTGCGTGGAATACGCCCTCAAGGCCCGGCCCCTGCGGAGGTACATCCCCAAGAACCAGCACCAGTACAAAGTGTGGTACGTGGTCAACTCCACCTACTTCGAGTACCTGATGTTCGTCCTCATCCTGCTCAACACCATCTGCCTGGCCATGCAGCACTACGGCCAGAGCTGCCTGTTCAAAATCGCCATGAACATCCTCAACATGCTCTTCACTGGCCTCTTCACCGTGGAGATGATCCTGAAGCTCATTGCCTTCAAACCCAAGGGTTACTTTAGTGATCCCTGGAATGTTTTTGACTTCCTCATCGTAATTGGCAGCATAATTGACGTCATTCTCAGTGAGACTAATCACTATTTCTGTGATGCATGGAATACATTTGACGCCTTGATTGTTGTGGGTAGCATTGTTGATATAGCAATCACCGAGGTAAACCCAGCTGAACATACCCAATGCTCTCCCTCTATGAACGCAGAGGAAAACTCCCGCATCTCCATCACCTTCTTCCGCCTGTTCCGGGTCATGCGTCTGGTGAAGCTGCTGAGCCGTGGGGAGGGCATCCGGACGCTGCTGTGGACCTTCATCAAGTCCTTCCAGGCCCTGCCCTATGTGGCCCTCCTGATCGTGATGCTGTTCTTCATCTACGCGGTGATCGGGATGCAGGTGTTTGGGAAAATTGCCCTGAATGATACCACAGAGATCAACCGGAACAACAACTTTCAGACCTTCCCCCAGGCCGTGCTGCTCCTCTTCAGGTGTGCCACCGGGGAGGCCTGGCAGGACATCATGCTGGCCTGCATGCCAGGCAAGAAGTGTGCCCCAGAGTCCGAGCCCAGCAACAGCACGGAGGGTGAAACACCCTGTGGTAGCAGCTTTGCTGTCTTCTACTTCATCAGCTTCTACATGCTCTGTGCCTTCCTGATCATCAACCTCTTTGTAGCTGTCATCATGGACAACTTTGACTACCTGACAAGGGACTGGTCCATCCTTGGTCCCCACCACCTGGATGAGTTTAAAAGAATCTGGGCAGAGTATGACCCTGAAGCCAAGGGTCGTATCAAACACCTGGATGTGGTGACCCTCCTCCGGCGGATTCAGCCGCCACTAGGTTTTGGGAAGCTGTGCCCTCACCGCGTGGCTTGCAAACGCCTGGTCTCCATGAACATGCCTCTGAACAGCGACGGGACAGTCATGTTCAATGCCACCCTGTTTGCCCTGGTCAGGACGGCCCTGAGGATCAAAACAGAAGGGAACCTAGAACAAGCCAATGAGGAGCTGCGGGCGATCATCAAGAAGATCTGGAAGCGGACCAGCATGAAGCTGCTGGACCAGGTGGTGCCCCCTGCAGGTGATGATGAGGTCACCGTTGGCAAGTTCTACGCCACGTTCCTGATCCAGGAGTACTTCCGGAAGTTCAAGAAGCGCAAAGAGCAGGGCCTTGTGGGCAAGCCCTCCCAGAGGAACGCGCTGTCTCTGCAGGCTGGCTTGCGCACACTGCATGACATCGGGCCTGAGATCCGACGGGCCATCTCTGGAGATCTCACCGCTGAGGAGGAGCTGGACAAGGCCATGAAGGAGGCTGTGTCCGCTGCTTCTGAAGATGACATCTTCAGGAGGGCCGGTGGCCTGTTCGGCAACCACGTCAGCTACTACCAAAGCGACGGCCGGAGCGCCTTCCCCCAGACCTTCACCACTCAGCGCCCGCTGCACATCAACAAGGCGGGCAGCAGCCAGGGCGACACTGAGTCGCCATCCCACGAGAAGCTGGTGGACTCCACCTTCACCCCGAGCAGCTACTCGTCCACCGGCTCCAACGCCAACATCAACAACGCCAACAACACCGCCCTGGGTCGCCTCCCTCGCCCCGCCGGCTACCCCAGCACGGTCAGCACTGTGGAGGGCCACGGGCCCCCCTTGTCCCCTGCCATCCGGGTGCAGGAGGTGGCGTGGAAGCTCAGCTCCAACAGGGAAAGGCACGTTCCGATGTGTGAGGATCTGGAGCTCAGGAGGGATTCAGGCTCAGCAGGGACTCAGGCTCACTGCCTTCTGCTCAGGAGAGCAAACCCCTCTAGGTGCCACTCCCGGGAGAGCCAGGCAGCCATGGCGGGTCAGGAGGAGACGTCTCAGGATGAGACCTATGAAGTGAAGATGAACCATGACACGGAGGCCTGCAGTGAGCCCAGCCTGCTCTCCACAGAGATGCTCTCCTACCAGGATGACGAAAATCGGCAACTGACGCTCCCAGAGGAGGACAAGAGGGACATCCGGCAATCTCCGAAGAGGGGTTTCCTCCGCTCTGCCTCACTAGGTCGAAGGGCCTCCTTCCACCTGGAATGTCTGAAGCGACAGAAGGACCGAGGGGGAGACATCTCTCAGAAGACAGTCCTGCCCTTGCATCTGGTTCATCATCAGGCATTGGCAGTGGCAGGCCTGAGCCCCCTCCTCCAGAGAAGCCATTCCCCTGCCTCATTCCCTAGGCCTTTTGCCACCCCACCAGCCACACCTGGCAGCCGAGGCTGGCCCCCACAGCCCGTCCCCACCCTGCGGCTTGAGGGGGTCGAGTCCAGTGAGAAACTCAACAGCAGCTTCCCATCCATCCACTGCGGCTCCTGGGCTGAGACCACCCCCGGTGGCGGGGGCAGCAGCGCCGCCCGGAGAGTCCGGCCCGTCTCCCTCATGGTGCCCAGCCAGGCTGGGGCCCCAGGGAGGCAGTTCCACGGCAGTGCCAGCAGCCTGGTGGAAGCGGTCTTGATTTCAGAAGGACTGGGGCAGTTTGCTCAAGATCCCAAGTTCATCGAGGTCACCACCCAGGAGCTGGCCGACGCCTGCGACATGACCATAGAGGAGATGGAGAGCGCGGCCGACAACATCCTCAGCGGGGGCGCCCCACAGAGCCCCAATGGCGCCCTCTTACCCTTTGTGAACTGCAGGGACGCGGGGCAGGACCGAGCCGGGGGCGAAGAGGACGCGGGCTGTGTGCGCGCGCGGGGTCGACCGAGTGAGGAGGAGCTCCAGGACAGCAGGGTCTACGTCAGCAGCCTGTAG MLTRVKSAVANFMGGIMAGSSGSEHGGGSCGGSDLPLRFPYGRPEFLGLSQDEVECSADHIARPILILKETRRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKAGAVTSTPNRNSSKRRSSLPNGEGLQLKENSESEGVSCHYWSLFDGHAGSGAAVVASRLLQHHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRGGVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKADGANALGGKGAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCYNQEGIADVPAEDDPSPCALETGHGRQCQNGTVCKPGWDGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWVNDAVGRDWPWIYFVTLIIIGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEEKPRNMSMPTSETESVNTENVAGGDIEGENCGARLAHRISKSKFSRYWRRWNRFCRRKCRAAVKSNVFYWLVIFLVFLNTLTIASEHYNQPNWLTEVQDTANKALLALFTAEMLLKMYSLGLQAYFVSLFNRFDCFVVCGGILETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERKKLARTASPEKKQELVEKPAVGESKEEKIELKSITADGESPPATKINMDDLQPNENEDKSPYPNPETTGEEDEEEPEMPVGPRPRPLSELHLKEKAVPMPEASAFFIFSSNNRFRLQCHRIVNDTIFTNLILFFILLSSISLAAEDPVQHTSFRNHILFYFDIVFTTIFTIEIALKILGNADYVFTSIFTLEIILKMTAYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQSSAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGVQLFKGKLYTCSDSSKQTEAECKGNYITYKDGEVDHPIIQPRSWENSKFDFDNVLAAMMALFTVSTFEGWPELLYRSIDSHTEDKGPIYNYRVEISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQHQYKVWYVVNSTYFEYLMFVLILLNTICLAMQHYGQSCLFKIAMNILNMLFTGLFTVEMILKLIAFKPKGYFSDPWNVFDFLIVIGSIIDVILSETNHYFCDAWNTFDALIVVGSIVDIAITEVNPAEHTQCSPSMNAEENSRISITFFRLFRVMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALNDTTEINRNNNFQTFPQAVLLLFRCATGEAWQDIMLACMPGKKCAPESEPSNSTEGETPCGSSFAVFYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNALSLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRAGGLFGNHVSYYQSDGRSAFPQTFTTQRPLHINKAGSSQGDTESPSHEKLVDSTFTPSSYSSTGSNANINNANNTALGRLPRPAGYPSTVSTVEGHGPPLSPAIRVQEVAWKLSSNRERHVPMCEDLELRRDSGSAGTQAHCLLLRRANPSRCHSRESQAAMAGQEETSQDETYEVKMNHDTEACSEPSLLSTEMLSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRASFHLECLKRQKDRGGDISQKTVLPLHLVHHQALAVAGLSPLLQRSHSPASFPRPFATPPATPGSRGWPPQPVPTLRLEGVESSEKLNSSFPSIHCGSWAETTPGGGGSSAARRVRPVSLMVPSQAGAPGRQFHGSASSLVEAVLISEGLGQFAQDPKFIEVTTQELADACDMTIEEMESAADNILSGGAPQSPNGALLPFVNCRDAGQDRAGGEEDAGCVRARGRPSEEELQDSRVYVSSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33172 SBNO1::RILPL1 ENSG00000139697.14::ENSG00000188026.13 NCIH2227 SRR8616112 SRR8652085 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2273 FALSE NA FALSE NA SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123364701:- chr12:123773656-123849394:- chr12:123849248:- RILPL1 ENSG00000188026.13 protein_coding - - chr12:123470054-123533719:- chr12:123498765:- chr12:123954601-124018266:- chr12:123983312:- chr12:123364363 chr12:123499123 NA NA chr12:123848910 chr12:123983670 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SBNO1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.11Mb] 8 9 8 9 ONLY_REF_SPLICE YES_LDAS 0.211 GT 1.7465 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33177 MARK4::ENSG00000267924 ENSG00000007047.16::ENSG00000267924.1 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA MARK4 ENSG00000007047.16 protein_coding + + chr19:45079288-45305284:+ chr19:45271708:+ chr19:45582546-45808542:+ chr19:45774966:+ ENSG00000267924 ENSG00000267924.1 lncRNA - - chr19:23817599-23874701:- chr19:23823906:- chr19:24000401-24057503:- chr19:24006708:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["MARK4:Oncogene"] 125 64 125 64 ONLY_REF_SPLICE YES_LDAS 1.9954 GT 1.8256 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN MAP/microtubule affinity-regulating kinase 4 CAMK CAMKL MARK Q96L34 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33179 ELAVL1::FBN3 ENSG00000066044.15::ENSG00000142449.13 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2274 FALSE NA FALSE NA ELAVL1 ENSG00000066044.15 protein_coding - - chr19:7958573-8005659:- chr19:7981083:- chr19:8023457-8070543:- chr19:8045967:- FBN3 ENSG00000142449.13 protein_coding - - chr19:8065402-8149592:- chr19:8097006:- chr19:8130286-8214476:- chr19:8161890:- chr19:7975751 chr19:8099734 NA NA chr19:8040635 chr19:8164618 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BRAP2|20-85|0.0017^RRM_1|22-92|2.3e-23^RRM_5|22-96|6.1e-07^PHM7_cyt|22-50|0.17^RRM_7|24-47|0.1^RRM_occluded|26-94|0.00039^RRM_3|29-94|0.0024^PHM7_cyt|51-102|0.032^BRAP2|104-171|1.7e-05^RRM_1|108-174|2.1e-21^RRM_3|108-167|8e-05^RRM_occluded|108-171|0.06^RRM_7|108-133|0.00044^PHM7_cyt|109-129|0.69^RRM_5|116-184|0.11^E2|125-141|0.00016^PHM7_cyt|146-188|0.0047^RRM_5-PARTIAL|243-276~|8.3e-07^RRM_1-PARTIAL|246-276~|5.7e-23^RRM_7|246-271|0.006^BRAP2-PARTIAL|269-276~|1.1 none ["ELAVL1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.08Mb];NEIGHBORS_OVERLAP:-:-:[84444] 55 29 55 29 ONLY_REF_SPLICE YES_LDAS 0.8869 GT 1.6729 AG 1.7819 ENST00000596459.5 1-276 ENST00000600128.6 5288-8430 chr19|-|[2]7981083-7981186[1]|[0]7991644-7991815[0]<==>chr19|-|[2]8065919-8066260[0]|[2]8072048-8072198[2]|[1]8073063-8073297[1]|[0]8075071-8075190[1]|[0]8075283-8075411[1]|[0]8081003-8081119[1]|[0]8081358-8081480[1]|[0]8083247-8083372[1]|[0]8085363-8085569[1]|[0]8086200-8086325[1]|[0]8087077-8087211[1]|[0]8087825-8087947[1]|[0]8088060-8088179[1]|[0]8089545-8089670[1]|[0]8089894-8089959[1]|[0]8090099-8090251[1]|[0]8091465-8091590[1]|[0]8094446-8094565[1]|[0]8095375-8095503[1]|[0]8095964-8096080[1]|[0]8096444-8096569[1]|[0]8096881-8097006[1] atgtctaatggttatgaagaccacatggccgaagactgcaggggtgacatcgggagaacgaatttgatcgtcaactacctccctcagaacatgacccaggatgagttacgaagcctgttcagcagcattggtgaagttgaatctgcaaaacttattcgggataaagtagcaggacacagcttgggctatggctttgtgaactacgtgaccgcgaaggatgcagagagagcgatcaacacgctgaacggcttgaggctccagtcaaaaaccattaagATGTCGATGAGTGTGGCAGCAGGGAGAGTCCCTGCCAGCAGAATGCTGACTGCATCAACATCCCCGGTAGCTACCGCTGCAAGTGCACCCGAGGGTACAAACTGTCGCCAGGCGGGGCTTGTGTGGGACGGAATGAGTGTCGGGAGATCCCGAATGTCTGTAGCCATGGTGACTGCATGGACACAGAAGGCAGCTACATGTGTCTGTGTCACCGTGGATTCCAGGCCTCTGCAGACCAGACCCTGTGCATGGACATTGACGAGTGTGACCGGCAGCCTTGTGGAAATGGGACCTGCAAGAACATCATTGGCTCCTACAACTGCCTCTGCTTCCCTGGCTTTGTGGTGACACACAATGGGGATTGTGTGGATTTTGATGAGTGTACTACCCTGGTGGGGCAGGTGTGCCGATTTGGCCATTGCCTCAACACAGCTGGTTCCTTCCACTGCCTCTGCCAGGATGGCTTTGAGCTCACAGCTGATGGGAAGAACTGTGTGGACACCAATGAGTGCCTCAGCCTTGCAGGAACCTGCCTACCCGGCACTTGCCAGAACCTCGAGGGCTCCTTCCGCTGCATCTGTCCCCCTGGCTTCCAGGTGCAGAGTGACCACTGCATTGATATCGACGAGTGCTCAGAGGAGCCCAACCTCTGCCTCTTTGGCACCTGTACCAACAGCCCTGGGAGCTTCCAGTGCCTCTGCCCACCTGGCTTTGTCCTCTCTGACAATGGGCACCGTTGCTTTGACACACGGCAGAGTTTCTGCTTCACCCGTTTTGAGGCTGGGAAGTGCTCGGTGCCCAAAGCTTTCAACACCACCAAGACCCGCTGCTGCTGCAGTAAGAGGCCTGGGGAGGGCTGGGGAGACCCCTGCGAACTGTGTCCCCAGGAGGGCAGCGCTGCCTTTCAGGAGCTCTGCCCCTTTGGCCACGGGGCAGTCCCAGGCCCGGATGACTCCCGAGAAGACGTGAATGAGTGTGCAGAGAACCCTGGCGTCTGCACTAACGGCGTCTGTGTCAACACCGATGGATCCTTCCGCTGTGAGTGTCCCTTTGGCTACAGCCTGGACTTCACTGGCATCAACTGTGTGGACACAGACGAGTGCTCTGTCGGCCACCCCTGTGGGCAAGGGACATGCACCAATGTCATCGGAGGCTTCGAATGTGCCTGTGCTGACGGCTTTGAGCCTGGCCTCATGATGACCTGCGAGGACATCGACGAATGCTCCCTGAACCCGCTGCTCTGTGCCTTCCGCTGCCACAATACCGAGGGCTCCTACCTGTGCACCTGTCCAGCCGGCTACACCCTGCGGGAGGATGGGGCCATGTGTCGAGATGTGGACGAGTGTGCAGATGGTCAGCAGGACTGCCACGCCCGGGGCATGGAGTGCAAGAACCTCATCGGTACCTTCGCGTGCGTCTGTCCCCCAGGCATGCGGCCCCTGCCTGGCTCTGGGGAGGGCTGCACAGATGACAATGAATGCCACGCTCAGCCTGACCTCTGTGTCAACGGCCGCTGTGTCAACACCGCGGGCAGCTTCCGGTGCGACTGTGATGAGGGATTCCAGCCCAGCCCCACCCTTACCGAGTGCCACGACATCCGGCAGGGGCCCTGCTTTGCCGAGGTGCTGCAGACCATGTGCCGGTCTCTGTCCAGCAGCAGTGAGGCTGTCACCAGGGCCGAGTGCTGCTGTGGGGGTGGCCGGGGCTGGGGGCCCCGCTGCGAGCTCTGTCCCCTGCCCGGCACCTCTGCCTACAGGAAGCTGTGCCCCCATGGCTCAGGCTACACTGCTGAGGGCCGAGATGTAGATGAATGCCGTATGCTTGCTCACCTGTGTGCTCATGGGGAGTGCATCAACAGCCTTGGCTCCTTCCGCTGCCACTGTCAGGCCGGGTACACACCGGATGCTACTGCTACTACCTGCCTGGATATGGATGAGTGCAGCCAGGTCCCCAAGCCATGTACCTTCCTCTGCAAAAACACGAAGGGCAGTTTCCTGTGCAGCTGTCCCCGAGGCTACCTGCTGGAGGAGGATGGCAGGACCTGCAAAGACCTGGACGAATGCACCTCCCGGCAGCACAACTGTCAGTTCCTCTGTGTCAACACTGTGGGCGCCTTCACCTGCCGCTGTCCGCCCGGCTTCACCCAGCACCACCAGGCCTGCTTCGACAATGATGAGTGCTCAGCCCAGCCTGGCCCATGTGGTGCCCACGGGCACTGCCACAACACCCCGGGCAGCTTCCGCTGTGAATGCCACCAAGGCTTCACCCTGGTCAGCTCAGGCCATGGCTGTGAAGATGTGAATGAATGTGATGGGCCCCACCGCTGCCAGCATGGCTGTCAGAACCAGCTAGGGGGCTACCGCTGCAGCTGCCCCCAGGGTTTCACCCAGCACTCCCAGTGGGCCCAGTGTGTGGATGAGAATGAGTGTGCCCTGTCGCCCCCCACCTGCGGGAGCGCCTCCTGTCGCAACACTCTTGGTGGCTTCCGCTGCGTCTGCCCCTCTGGCTTTGACTTTGATCAGGCCCTCGGGGGCTGCCAGGAGGTGGATGAGTGCGCCGGACGGCGTGGCCCCTGTAGCTACAGCTGTGCCAACACGCCTGGTGGCTTCCTGTGCGGCTGTCCTCAAGGCTACTTCCGGGCTGGGCAAGGGCACTGTGTCTCCGGCCTGGGCTTCAGCCCCGGACCCCAGGACACCCCGGACAAAGAGGAGCTGCTCTCGTCTGAAGCCTGCTACGAATGCAAGATCAATGGCCTCTCCCCTCGGGACCGGCCACGACGCAGTGCCCACAGGGACCACCAGGTGAACCTGGCCACCCTTGACTCCGAGGCCCTGCTGACCTTGGGCCTGAACCTCTCACACCTGGGCCGGGCCGAGCGCATCCTGGAGCTCCGGCCGGCCCTGGAGGGTCTAGAGGGCCGGATCCGCTACGTCATCGTCCGCGGAAACGAGCAAGGTTTCTTTCGCATGCATCACCTCCGTGGCGTCAGCTCCCTGCAGCTGGGGCGGAGGCGGCCGGGGCCTGGAACCTACCGGCTGGAGGTGGTGAGCCACATGGCAGGACCCTGGGGTGTCCAGCCAGAGGGGCAGCCAGGGCCATGGGGCCAGGCCTTGAGGCTGAAGGTGCAGCTGCAGTTGCTTTAG MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKMSMSVAAGRVPASRMLTASTSPVATAASAPEGTNCRQAGLVWDGMSVGRSRMSVAMVTAWTQKAATCVCVTVDSRPLQTRPCAWTLTSVTGSLVEMGPARTSLAPTTASASLALW*HTMGIVWILMSVLPWWGRCADLAIASTQLVPSTASARMALSSQLMGRTVWTPMSASALQEPAYPALARTSRAPSAASVPLASRCRVTTALISTSAQRSPTSASLAPVPTALGASSASAHLALSSLTMGTVALTHGRVSASPVLRLGSARCPKLSTPPRPAAAAVRGLGRAGETPANCVPRRAALPFRSSAPLATGQSQARMTPEKT*MSVQRTLASALTASVSTPMDPSAVSVPLATAWTSLASTVWTQTSALSATPVGKGHAPMSSEASNVPVLTALSLAS**PARTSTNAP*TRCSVPSAATIPRAPTCAPVQPATPCGRMGPCVEMWTSVQMVSRTATPGAWSARTSSVPSRASVPQACGPCLALGRAAQMTMNATLSLTSVSTAAVSTPRAASGATVMRDSSPAPPLPSATTSGRGPALPRCCRPCAGLCPAAVRLSPGPSAAVGVAGAGGPAASSVPCPAPLPTGSCAPMAQATLLRAEM*MNAVCLLTCVLMGSASTALAPSAATVRPGTHRMLLLLPAWIWMSAARSPSHVPSSAKTRRAVSCAAVPEATCWRRMAGPAKTWTNAPPGSTTVSSSVSTLWAPSPAAVRPASPSTTRPASTMMSAQPSLAHVVPTGTATTPRAASAVNATKASPWSAQAMAVKM*MNVMGPTAASMAVRTS*GATAAAAPRVSPSTPSGPSVWMRMSVPCRPPPAGAPPVATLLVASAASAPLALTLIRPSGAARRWMSAPDGVAPVATAVPTRLVASCAAVLKATSGLGKGTVSPAWASAPDPRTPRTKRSCSRLKPATNARSMASPLGTGHDAVPTGTTR*TWPPLTPRPC*PWA*TSHTWAGPSASWSSGRPWRV*RAGSATSSSAETSKVSFACITSVASAPCSWGGGGRGLEPTGWRW*ATWQDPGVSSQRGSQGHGARP*G*RCSCSCF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33180 GRK5::DENND10 ENSG00000198873.12::ENSG00000119979.18 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2277 FALSE NA FALSE NA GRK5 ENSG00000198873.12 protein_coding + + chr10:119207571-119459745:+ chr10:119207969:+ chr10:120967083-121219257:+ chr10:120967481:+ DENND10 ENSG00000119979.18 protein_coding + + chr10:119104086-119137984:+ chr10:119129515:+ chr10:120863598-120897496:+ chr10:120889027:+ chr10:119225775 chr10:119123702 NA NA chr10:120985287 chr10:120883214 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none none 31 5 15.5 2.14 ONLY_REF_SPLICE YES_LDAS 0.1862 GT 1.7056 AG 1.9086 ENST00000392870.3 1-52 ENST00000361432.3 695-1074 chr10|+|[0]119207918-119207969[0]<==>chr10|+|[1]119129515-119129622[0]|[1]119132515-119132609[2]|[0]119136471-119136647[2] atggagctggaaaacatcgtggccaacacggtcttgctgaaagccagggaagGTTACGTCGCTGGATTTGTAGACTTGGAGGTGAGCAACAGACCAGACCTCTATGATGTGTTTGTGAATCTGGCAGAGAGTGAGATTACCATTGCTCCCCTTGCAAAAGAGGCCATGGCAATGGGCAAACTGCACAAAGAAATGGGTCAGCTAATTGTTCAGTCTGCAGAAGATCCAGAGAAATCAGAGAGCCACGTTATACAGGATATTGCTCTAAAAACAAGAGAAATCTTTACCAACCTAGCACCGTTTTCAGAAGTTTCGGCTGATGGAGAAAAGAGAGTCCTTAATTTGGAGGCGCTAAAGCAAAAACGATTTCCACCAGCAACAGAAAACTTCCTTTATCATCTAGCAGCAGCCGAACAAATGCTGAAAATCTGA MELENIVANTVLLKAREGYVAGFVDLEVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTNLAPFSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAAEQMLKI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE G protein-coupled receptor kinase 5 AGC GRK GRK P34947 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33181 PCNT::C21orf58 ENSG00000160299.19::ENSG00000160298.18 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2275 FALSE NA FALSE NA PCNT ENSG00000160299.19 protein_coding + + chr21:46324124-46445769:+ chr21:46326589:+ chr21:47744038-47865682:+ chr21:47746503:+ C21orf58 ENSG00000160298.18 protein_coding - - chr21:46300181-46323875:- chr21:46302576:- chr21:47720095-47743789:- chr21:47722490:- chr21:46331317 chr21:46309043 NA NA chr21:47751231 chr21:47728957 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.00Mb];LOCAL_INVERSION:+:-:[247] 31 8 31 8 ONLY_REF_SPLICE YES_LDAS 0.4118 GT 1.9329 AG 1.9219 ENST00000695558.1 1-267 ENST00000291691.12 722-969 chr21|+|[0]46324229-46324282[2]|[0]46326377-46326589[2]<==>chr21|-|[2]46301999-46302154[0]|[2]46302485-46302576[1] atggaagttgagcaagagcagcggcgcagaaaggtggaggccgggaggacgaagcttgctcacttccgacagagaaaaacaaaaggtgacagttcgcattcggagaaaaagacggcgaagaggaagggctcggctgtcgatgcgtctgtccaggaggagagtccggtaaccaaggaggacagcgcactctgtggaggaggggacatttgcaaaagcacatcatgtgacgacacccctgatggggcaggaggggcctttgcagctcagACATGGTGGAGCTGCTGCTGCTGCAGAACGCACAGGTGCACCAGTTGGTCCTGCAGAACTGGATGCTCAAGGCCCTGCCCCCAGCCCTGCAGGACCCGCCACATGTGCCCCCGAGGGTCCCACGAGCTGCCAGGCCAAGGCTGCCTGCCGTGCACCACCACCACCACCACCACCATGCTGTGTGGCCACCTGGGGCTGCCACTGTCCTCCAGCCCGCCCCCAGCCTGTGGACGCCTGGCCCACCCTGA MEVEQEQRRRKVEAGRTKLAHFRQRKTKGDSSHSEKKTAKRKGSAVDASVQEESPVTKEDSALCGGGDICKSTSCDDTPDGAGGAFAAQTWWSCCCCRTHRCTSWSCRTGCSRPCPQPCRTRHMCPRGSHELPGQGCLPCTTTTTTTMLCGHLGLPLSSSPPPACGRLAHP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33182 C21orf58::PCNT ENSG00000160298.18::ENSG00000160299.19 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2276 FALSE NA FALSE NA C21orf58 ENSG00000160298.18 protein_coding - - chr21:46300181-46323875:- chr21:46311456:- chr21:47720095-47743789:- chr21:47731370:- PCNT ENSG00000160299.19 protein_coding + + chr21:46324124-46445769:+ chr21:46440083:+ chr21:47744038-47865682:+ chr21:47859996:+ chr21:46310744,chr21:46310749 chr21:46439748,chr21:46439743 NA NA chr21:47730658,chr21:47730663 chr21:47859661,chr21:47859656 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4587|234-296|7e-21 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.00Mb];LOCAL_INVERSION:-:+:[247] 21 18 21 18 ONLY_REF_SPLICE YES_LDAS 0.4117 GT 1.5058 AG 1.8892 ENST00000291691.12 1-721 ENST00000695558.1 9307-10044 chr21|-|[0]46311456-46311567[0]|[2]46314716-46314880[0]|[2]46315474-46315547[1]|[0]46317208-46317268[0]|[2]46318012-46318220[1]|[0]46322639-46322738[0]<==>chr21|+|[0]46440083-46440202[2]|[0]46440855-46441084[1]|[2]46442497-46442573[0]|[1]46443810-46443948[1]|[2]46444694-46444821[0]|[1]46445284-46445327[2] atggcgcgatctcggctccctgcaacctccctcaggaagccgtggaagctcgaccgccagaaacttccttctcctgactcaggccacagtcttctgtgtggctggtctccaggaggtaaggcccgccctgcaggcaacaccggtgcttgggctcctgctgagcagttctttcctgcgagtaacagaaccagggagggaggtgggctgtggcctcccctgcccctacagtcgtctcctgcagctcccaccatgctggactcatcagcagcagagcaagtgacccgactgacgctgaagctcttgggacagaagctggagcaagaacggcagaacgtggaagggggacctgagggcctccacctcgagccaggaaatgaggaccggccggacgatgccctgcagactgctctgaagagaaggagggaccttctgcagagactccgggaacaacacctcctggacgagctctctcgggcccaggcctggagcgggccaagcagaggagccctcgggtcagccctgcccccagagctgccccccacgggcatcctacccactgcctccccatccccgctggccccagacccgccaaggatcatcctgcctacggtcccccagcctcctgccaccatcattcagcagctccctcagcagccactcatagcacagattcctcctccccaggccttccctactcaacggtcaggaagtattaaggaagAGGTCGGAAAGGTCTGCTTGGAAGCCAGACGAAACGGCTCCACAGAGTTCCCTGAGGCGCCCAGACCCCGGCCGGCTTCCACCAGCTGCCAGCGAGGAAGCACACACCAGCAATGTCAAGATGGAAAAATTGTACCTGCATTACTTGAGAGCAGAGAGCTTTAGAAAAGCTCTGATTTATCAAAAGAAGTATCTTTTGCTGTTGATTGGTGGATTCCAGGATTCTGAACAAGAAACACTCTCCATGATTGCCCATTTGGGGGTATTTCCTTCCAAAGCAGAACGGAAAATCACATCTCGTCCTTTCACCAGGTTCCGCACGGCCGTCAGGGTGGTCATTGCAATATTAAGATTACGTTTTTTGGTTAAGAAATGGCAAGAAGTAGATCGGAAAGGAGCTCTGGCACAAGGCAAAGCCCCTCGCCCAGGGCCCCGAGCACGACAGCCGCAGTCTCCACCCAGAACCAGAGAGTCCCCCCCAACCCGGGATGTACCCTCTGGCCACACCAGGGACCCTGCCAGAGGCCGCAGACTGGCAGCAGCAGCCTCCCCACACAGTGGGGGAAGAGCCACTCCATCCCCAAATTCAAGATTAGAAAGATCCCTGACTGCTTCTCAAGATCCAGAACATTCCTTGACAGAGTATATTCACCATTTAGAAGTGATCCAGCAAAGATTGGGAGGGGTACTACCAGATTCTACTTCAAAGAAATCCTGCCACCCGATGATTAAACAGTGA MARSRLPATSLRKPWKLDRQKLPSPDSGHSLLCGWSPGGKARPAGNTGAWAPAEQFFPASNRTREGGGLWPPLPLQSSPAAPTMLDSSAAEQVTRLTLKLLGQKLEQERQNVEGGPEGLHLEPGNEDRPDDALQTALKRRRDLLQRLREQHLLDELSRAQAWSGPSRGALGSALPPELPPTGILPTASPSPLAPDPPRIILPTVPQPPATIIQQLPQQPLIAQIPPPQAFPTQRSGSIKEEVGKVCLEARRNGSTEFPEAPRPRPASTSCQRGSTHQQCQDGKIVPALLESREL*KSSDLSKEVSFAVDWWIPGF*TRNTLHDCPFGGISFQSRTENHISSFHQVPHGRQGGHCNIKITFFG*EMARSRSERSSGTRQSPSPRAPSTTAAVSTQNQRVPPNPGCTLWPHQGPCQRPQTGSSSLPTQWGKSHSIPKFKIRKIPDCFSRSRTFLDRVYSPFRSDPAKIGRGTTRFYFKEILPPDD*TV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33186 ENSG00000273139::MED15 ENSG00000273139.2::ENSG00000099917.17 NCIH2286 SRR8616113 SRR8652082 LUNG carcinoma (small_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000273139 ENSG00000273139.2 lncRNA + + chr22:20320104-20321208:+ chr22:20320505:+ chr22:20307627-20308731:+ chr22:20308028:+ MED15 ENSG00000099917.17 protein_coding + + chr22:20495913-20587632:+ chr22:20564450:+ chr22:20850200-20941919:+ chr22:20918737:+ chr22:20321282,chr22:20321282 chr22:20560313,chr22:20560310 NA NA chr22:20308805,chr22:20308805 chr22:20914600,chr22:20914597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 10 6 10 INCL_NON_REF_SPLICE YES_LDAS 0.1689 GT 1.1589 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33188 BCAR3::LINC01787 ENSG00000137936.18::ENSG00000231987.1 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BCAR3 ENSG00000137936.18 protein_coding - - chr1:93561741-93847150:- chr1:93674614:- chr1:94027298-94312706:- chr1:94140170:- LINC01787 ENSG00000231987.1 lncRNA - - chr1:96254069-96374125:- chr1:96304338:- chr1:96719625-96839681:- chr1:96769894:- chr1:93670158,chr1:93670163 chr1:96339637,chr1:96339639 NA NA chr1:94135714,chr1:94135719 chr1:96805193,chr1:96805195 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 56 26 56 26 ONLY_REF_SPLICE YES_LDAS 1.1134 GT 1.8062 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33193 GSK3B::ENSG00000223727 ENSG00000082701.17::ENSG00000223727.6 NCIH226 SRR8616114 SRR8652083 LUNG carcinoma (squamous_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GSK3B ENSG00000082701.17 protein_coding - - chr3:119821321-120094994:- chr3:120093347:- chr3:119540168-119813841:- chr3:119812194:- ENSG00000223727 ENSG00000223727.6 lncRNA - - chr3:3250687-3627296:- chr3:3382630:- chr3:3292371-3668980:- chr3:3424314:- chr3:120072827,chr3:120072830 chr3:3382957,chr3:3382957 NA NA chr3:119791674,chr3:119791677 chr3:3424641,chr3:3424641 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GSK3B:ArcherDX_panel","GSK3B:FoundationOne_panel","GSK3B:Oncogene"] 8 2 8 1.33 INCL_NON_REF_SPLICE YES_LDAS 0.1267 GT 1.8892 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Glycogen synthase kinase-3 beta CMGC GSK P49841 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Glycogen Synthase Kinase 3 Beta 2 endometrial cancer epithelial frameshift, missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 33201 ARHGEF12::ENSG00000286992 ENSG00000196914.9::ENSG00000286992.3 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ARHGEF12 ENSG00000196914.9 protein_coding + + chr11:120336413-120489937:+ chr11:120337275:+ chr11:120207122-120360646:+ chr11:120207984:+ ENSG00000286992 ENSG00000286992.3 lncRNA + + chr11:119975745-120039822:+ chr11:120037233:+ chr11:119846454-119910531:+ chr11:119907942:+ chr11:120351558 chr11:120019052 NA NA chr11:120222267 chr11:119889761 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ARHGEF12:Oncogene"] 242 56 242 56 ONLY_REF_SPLICE YES_LDAS 2.4802 GT 1.9086 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE RHO guanine nucleotide exchange factor (GEF) 12 (LARG) 1 AML leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33204 RASSF3::TBK1 ENSG00000153179.14::ENSG00000183735.11 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA RASSF3 ENSG00000153179.14 protein_coding + + chr12:64507001-64697564:+ chr12:64610743:+ chr12:64900781-65091344:+ chr12:65004523:+ TBK1 ENSG00000183735.11 protein_coding + + chr12:64452090-64502114:+ chr12:64480012:+ chr12:64845870-64895894:+ chr12:64873792:+ chr12:64667060,chr12:64667056 chr12:64478177,chr12:64478170 NA NA chr12:65060840,chr12:65060836 chr12:64871957,chr12:64871950 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nore1-SARAH|51-62|0.98^Mst1_SARAH|52-60|2.4^Vps27_GAT-like|53-63|0.25^DTP-pb9_A-dom_C|70-81|0.00017^RA-PARTIAL|104-111~|3.4e-19 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.11Mb] 61 3 61 3 ONLY_REF_SPLICE YES_LDAS 0.5327 GT 1.7465 AG 1.5329 ENST00000542104.6 1-111 ENST00000677973.1 183-188 chr12|+|[0]64610633-64610743[2]<==>chr12|+|[0]64480012-64480017[2] atgagcagcggctacagcagcctggaggaggacgccgaggacttcttcttcaccgccaggacctccttcttcaggagagcgccccagggcaagccccgctccggccaacaaGTATAA MSSGYSSLEEDAEDFFFTARTSFFRRAPQGKPRSGQQV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE TRUE Serine/threonine-protein kinase TBK1 Other IKK Q9UHD2 TRUE Large_intestine,Oesophagus,Skin no_match TRUE Rectum adenocarcinoma RECTUM no_match 65004523|65004523|65004523|65023024 TRUE|TRUE|TRUE|FALSE 64889263|64882267|64883821|64882267 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33208 MORC3::DOP1B ENSG00000159256.13::ENSG00000142197.13 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 2287 FALSE NA FALSE NA MORC3 ENSG00000159256.13 protein_coding + + chr21:36320189-36386148:+ chr21:36369876:+ chr21:37692487-37758446:+ chr21:37742174:+ DOP1B ENSG00000142197.13 protein_coding + + chr21:36156782-36294274:+ chr21:36288014:+ chr21:37529080-37666572:+ chr21:37660312:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HATPase_c_3|30-139|6.6e-19^HATPase_c|31-93|8.2e-10^Morc6_S5|249-382|1e-51^zf-CW|409-451|3.1e-20^bZIP_1|544-565|0.096^DUF3450|673-737|0.0013^CC149|691-793|0.34^HATPase_c_3|692-712|8.6^THOC7|694-737|0.21^SOGA|696-790|0.053^ERM_C|708-736|1.9^bZIP_1|711-739|7.7^DUF2443|763-796|0.00025^DUF3450|764-818|0.0065^SOGA|772-812|1.1^bZIP_1|774-791|0.11^ERM_C|775-812|0.065^THOC7|780-867|3.8e-05^DUF3450|813-874|0.0053^CC149|821-890|2.7e-06^SOGA|834-901|0.0019^bZIP_1|834-865|0.00024^ERM_C|837-879|9.8e-05^DUF2443|843-862|0.38^YadA_stalk|858-881|0.0031^YadA_stalk|897-905|0.5 none none 31 8 31 8 ONLY_REF_SPLICE YES_LDAS 0.3246 GT 1.7465 AG 1.7819 ENST00000400485.6 1-2508 ENST00000691173.1 6161-6897 chr21|+|[0]36320265-36320303[2]|[0]36333646-36333718[0]|[1]36336874-36337006[1]|[2]36337732-36337946[0]|[1]36338774-36338921[1]|[2]36341399-36341546[2]|[0]36344579-36344707[2]|[0]36344912-36345031[2]|[0]36349311-36349408[1]|[2]36356620-36356724[1]|[2]36359955-36360077[1]|[2]36360184-36360258[1]|[2]36362183-36362228[2]|[0]36364093-36364259[1]|[2]36368988-36369876[2]<==>chr21|+|[1]36288014-36288150[2]|[0]36288756-36288811[1]|[2]36289045-36289206[1]|[2]36292104-36292233[2]|[0]36293320-36293571[2] atggcggcgcagccaccccgcgggatacgcctcagcgcgctttgcccgaagtttttacatacaaattctactagtcacacctggccattcagtgcagttgctgaattaatagataatgcttatgatcctgatgtgaacgctaaacaaatatggattgacaaaacagtgataaatgaccatatatgcttgacattcaccgacaatgggaatggtatgacttctgataaattacataaaatgctaagctttggcttcagtgacaaagtcaccatgaatggtcatgtcccagttggattatatgggaatggcttcaagtcgggttctatgcgtctgggtaaagacgcaatcgtttttaccaaaaatggagaaagcatgagcgtgggccttttgtctcagacctacttggaagtcataaaagcggagcatgttgttgttccaatagtggcattcaacaagcaccgacagatgattaatttagcagaatcaaaagccagccttgctgcaattctggaacattctctgttttccacggaacagaagttactggcagaacttgatgctattataggcaagaaggggacgaggatcatcatttggaatcttagaagctacaaaaatgcaacagagttcgattttgaaaaggataaatatgatatcagaattcccgaggatttagatgagataacagggaagaaggggtacaagaagcaggaaaggatggaccagattgcccctgagagtgactattccctgagggcttattgcagtatattatatctaaagccaagaatgcagatcatcctacgtggacagaaagtgaagacacagctggtttcgaagagtcttgcctacatcgaacgtgatgtttatcgaccaaaatttttatctaaaacagtgagaattacctttggattcaactgcagaaataaagatcattatgggataatgatgtatcacagaaatagactcatcaaagcttatgaaaaagttggatgtcagttaagggcaaacaacatgggtgttggagtggttggaattatagagtgtaatttccttaagccaactcataataaacaagatttcgactatactaatgagtacagacttacaataacagcactaggagaaaagctgaatgattactggaatgaaatgaaagtgaagaaaaatacagaatatcctctaaatttgccagttgaagatatacagaagcgtcctgatcagacatgggttcagtgtgatgcctgtctaaagtggcggaaattacctgatgggatggatcaacttcctgaaaaatggtattgctccaataaccctgacccacagttcagaaattgtgaggttccagaagaacctgaagatgaggatttggtacatcccacttatgaaaaaacctacaaaaagaccaacaaggaaaaattcaggatcagacaaccggaaatgatccctcggattaatgctgaactgttgtttcggccaactgctctttcaactccaagcttttcttctcctaaggaaagtgttccaagaagacatctttcagaaggaacaaattcttatgcgacaagacttctaaataatcatcaagttccacctcagtctgaacctgagagcaacagcttgaaacggagactttctactcgttcctcaattttgaatgcaaagaatcggagattgagtagtcagtttgaaaattcagtttataaaggtgatgatgatgatgaagatgtcatcatcttagaagaaaacagtacccccaaacctgcagtagatcatgatattgacatgaaatcagaacagagtcacgttgagcaaggtggtgttcaggttgagtttgtgggtgacagtgaaccttgtggccagactggttcaacaagcacctcatcatcccgatgcgaccagggaaatactgcagctacccagactgaagtaccaagtttagttgttaaaaaagaagaaactgttgaagacgagatagacgtaagaaatgatgcagtgattctgccctcctgtgtagaagctgaagcaaagatacatgaaacccaggaaaccaccgataaatctgcagatgatgcaggctgccaattacaagaactgagaaaccagctactccttgtcactgaggaaaaagagaattataaaagacagtgtcatatgtttactgatcaaatcaaagtgttacaacagaggatactagaaatgaatgacaagtatgttaagaaagaaacttgccatcagtccactgaaaccgatgctgtatttttacttgaaagtattaatggcaaatctgaaagtccagaccatatggtatctcagtatcagcaagctttggaagaaatagaaaggctgaaaaaacaatgtagtgctttgcaacatgtaaaggctgaatgcagccagtgttccaataatgagagtaaaagtgaaatggatgagatggctgtgcagcttgacgatgtgtttagacaactggacaaatgcagtattgagagggaccagtataaaagtgagAACGCCTGACAGACAATCTCAGAGTTGGACAGACATCCATAGTTGCTGCTCAGATGTTTCTTTTTTTCAGAGTTTTGCTGCTAAGAATATCTCCTCAACATTTGACTTCATTGTGGCCAATAATGGTCTCTGAATTGATTCAGACATTCACACAGCTTGAAGAAGATCTAAAAGATGAAGATGAGTCATTGAGAAGCACCAACAAAGTAAACAGAACGAAAGTTTCAGTCCCGGATGCAAATGGACCCTCAGTGGGGGAGATACCCCAGAGTGAACTCATCTTGTATTTATCAGCTTGCAAATTCTTGGACACAGCGCTTTCTTTTCCACCTGACAAGATGCCATTATTTCAAATTTATAGGTGGGCATTTATTCCAGAAGTGGACACAGAGGGCCCTGCCTTCCTGTCGGATGTAGAGGAGAATCACCAAGAATGCAAACCCCACACTGTCAGGATTCTAGAACTTCTAAAATTAAAGTTTGGGGAAATCAGTAGCTCTGATGAGATCACCATGAAGAGTGAATTCCCGCTTCTGCGCCAACATTCTGTTTCCAGCATCAGGCAGTTGATGCCATTCTTCATGACTCTAAATGGTGCATTTAAGACCCAGAGACAGCTGCCTGCTGATAGCCCAGGAACTCCATTCTTGGACTTTCCTGTCACAGATAGCCCAAGGATCTTAAAACAACTGGAAGAATGCATCGAATATGATTTTCTGGAACATCCAGAATGTTAA MAAQPPRGIRLSALCPKFLHTNSTSHTWPFSAVAELIDNAYDPDVNAKQIWIDKTVINDHICLTFTDNGNGMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLLSQTYLEVIKAEHVVVPIVAFNKHRQMINLAESKASLAAILEHSLFSTEQKLLAELDAIIGKKGTRIIIWNLRSYKNATEFDFEKDKYDIRIPEDLDEITGKKGYKKQERMDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSLAYIERDVYRPKFLSKTVRITFGFNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIECNFLKPTHNKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVEDIQKRPDQTWVQCDACLKWRKLPDGMDQLPEKWYCSNNPDPQFRNCEVPEEPEDEDLVHPTYEKTYKKTNKEKFRIRQPEMIPRINAELLFRPTALSTPSFSSPKESVPRRHLSEGTNSYATRLLNNHQVPPQSEPESNSLKRRLSTRSSILNAKNRRLSSQFENSVYKGDDDDEDVIILEENSTPKPAVDHDIDMKSEQSHVEQGGVQVEFVGDSEPCGQTGSTSTSSSRCDQGNTAATQTEVPSLVVKKEETVEDEIDVRNDAVILPSCVEAEAKIHETQETTDKSADDAGCQLQELRNQLLLVTEEKENYKRQCHMFTDQIKVLQQRILEMNDKYVKKETCHQSTETDAVFLLESINGKSESPDHMVSQYQQALEEIERLKKQCSALQHVKAECSQCSNNESKSEMDEMAVQLDDVFRQLDKCSIERDQYKSENA*QTISELDRHP*LLLRCFFFSEFCC*EYLLNI*LHCGQ*WSLN*FRHSHSLKKI*KMKMSH*EAPTK*TERKFQSRMQMDPQWGRYPRVNSSCIYQLANSWTQRFLFHLTRCHYFKFIGGHLFQKWTQRALPSCRM*RRITKNANPTLSGF*NF*N*SLGKSVALMRSP*RVNSRFCANILFPASGS*CHSS*L*MVHLRPRDSCLLIAQELHSWTFLSQIAQGS*NNWKNASNMIFWNIQNV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Bladder no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33209 FHDC1::GOPC ENSG00000137460.10::ENSG00000047932.14 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2290 FALSE NA FALSE NA FHDC1 ENSG00000137460.10 protein_coding + + chr4:152936323-152979671:+ chr4:152936409:+ chr4:153857475-153900823:+ chr4:153857561:+ GOPC ENSG00000047932.14 protein_coding - - chr6:117560269-117602542:- chr6:117579064:- chr6:117881432-117923705:- chr6:117900227:- chr4:152939166,chr4:152939163 chr6:117587327,chr6:117587330 NA NA chr4:153860318,chr4:153860315 chr6:117908490,chr6:117908493 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GOPC:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr6] 19 0 19 0 ONLY_REF_SPLICE YES_LDAS 0.1581 GT 1.2729 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE golgi associated PDZ and coiled-coil motif containing 1 glioblastoma, cholangiocarcinoma, borderline ovarian epithelial, other fusion translocation 33213 TNRC18::RNF216 ENSG00000182095.15::ENSG00000011275.19 BT20 SRR8616124 SRR8639208 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2286 FALSE NA FALSE NA TNRC18 ENSG00000182095.15 protein_coding - - chr7:5306790-5425414:- chr7:5423441:- chr7:5346421-5465045:- chr7:5463072:- RNF216 ENSG00000011275.19 protein_coding - - chr7:5620047-5781696:- chr7:5761138:- chr7:5659678-5821327:- chr7:5800769:- chr7:5396356,chr7:5396359,chr7:5396358 chr7:5765518,chr7:5765518,chr7:5765695 NA NA chr7:5435987,chr7:5435990,chr7:5435989 chr7:5805149,chr7:5805149,chr7:5805326 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["RNF216:Oncogene"];["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr7:0.19Mb] 18 16 17.04 16 ONLY_REF_SPLICE YES_LDAS 0.275 GT 1.4566 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-6874 chr7:5711840-5711910:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Stomach,Breast,Ovary,Uterus_corpus exact TRUE Lung adenocarcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Breast invasive carcinoma,Uterine Corpus Endometrial Carcinoma,Uterine Corpus Endometrial Carcinoma,Stomach adenocarcinoma LUNG,BREAST,UTERUS,BREAST,UTERUS,UTERUS,STOMACH exact 5434071,5410006|5410006,5460691|5463072|5446781,5410006,5446781|5463072|5460691|5464922,5399029,5460691|5446781|5463072|5464922 FALSE,FALSE|FALSE,FALSE|TRUE|FALSE,FALSE,FALSE|TRUE|FALSE|FALSE,FALSE,FALSE|FALSE|TRUE|FALSE 5663756,5692141|5681007,5681007|5681007|5681007,5681007,5681007|5681007|5681007|5681007,5765069,5681007|5681007|5681007|5681007 FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE|FALSE YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,PARTIALLY Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,NA,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA TRUE Trinucleotide repeat containing 18 2 paediatric AML, promyelocytic leukaemia leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33222 MLLT10::MALRD1 ENSG00000078403.17::ENSG00000204740.11 HEPG2 SRR8616129 SRR8639142 LIVER carcinoma (hepatocellular_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MLLT10 ENSG00000078403.17 protein_coding + + chr10:21524646-21743630:+ chr10:21681376:+ chr10:21813575-22032559:+ chr10:21970305:+ MALRD1 ENSG00000204740.11 protein_coding + + chr10:19048801-19790401:+ chr10:19257684:+ chr10:19337730-20079330:+ chr10:19546613:+ chr10:21711775,chr10:21711771,chr10:21711776 chr10:19239146,chr10:19239141,chr10:19239141 NA NA chr10:22000704,chr10:22000700,chr10:22000705 chr10:19528075,chr10:19528070,chr10:19528070 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-HC5HC2H_2|19-56|0.0014^zf-HC5HC2H|23-56|0.0073^PHD|25-71|1.9e-08^SLX1_C|25-56|0.003^PHD_2|37-72|2.1e-13^zf-HC5HC2H|73-92|0.25^PHD|80-87|4.2^zf-HC5HC2H_2|81-197|1.1e-31^PHD_2|81-88|2.4^zf-HC5HC2H|102-197|1.1e-19^SLX1_C|136-174|0.00066^PHD|137-173|0.037^PHD_2|161-174|3.3 MAM|920-989|5.2e-12^Ldl_recept_a|1066-1098|1.4e-12^MAM|1108-1269|1.1e-33^Ldl_recept_a|1281-1317|3.2e-12^Ldl_recept_a|1326-1360|2.8e-12^Ldl_recept_a|1364-1401|1.1e-07 ["MLLT10:Oncogene"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:1.74Mb] 3 8 3 8 ONLY_REF_SPLICE YES_LDAS 0.132 GT 1.7819 AG 1.7819 ENST00000631589.1 1-1666 ENST00000377266.7 919-4461 chr10|+|[0]21534645-21534804[0]|[1]21538833-21538912[2]|[0]21586294-21586348[0]|[1]21595331-21595440[2]|[0]21612348-21612451[1]|[2]21614831-21614924[2]|[0]21617112-21617207[2]|[0]21651673-21651768[2]|[0]21670449-21670704[0]|[1]21673350-21673919[0]|[1]21681332-21681376[0]<==>chr10|+|[0]19257684-19257771[0]|[1]19280047-19280223[0]|[1]19283019-19283181[1]|[2]19323949-19324105[2]|[0]19327563-19327673[2]|[0]19331369-19331582[0]|[1]19347771-19348018[2]|[0]19352006-19352297[0]|[1]19387528-19387773[0]|[1]19389183-19389362[0]|[1]19389452-19389609[2]|[0]19488960-19489173[0]|[1]19491517-19491645[0]|[1]19498485-19498646[0]|[1]19531194-19531351[2]|[0]19567502-19567703[0]|[1]19595194-19595457[0]|[1]19607777-19607902[0]|[1]19692458-19692554[1]|[2]19730706-19730781[2]|[0]19734157-19734237[2] atggtctctagcgaccggcccgtgtcactggaggacgaggtctcccatagtatgaaggagatgattggaggctgttgcgtttgctcagacgagagaggctgggccgagaacccgctggtttattgcgacgggcacggctgcagcgtcgcggtgcatcaagcttgctatggcattgttcaagtacccactggaccgtggttttgcaggaaatgtgaatctcaggagagagcagccagagtgagatgtgaactttgtccccataaggatggagctttaaaaagaacagataatgggggttgggcccatgtggtttgtgccctgtatattccagaggtacaatttgccaatgtttccacaatggaaccaattgttttacagtctgttccgcatgatcgttataataagacttgctacatttgtgatgaacaaggaagagaaagcaaagcagccactggtgcttgcatgacatgtaataaacatggatgtcgacaggctttccatgtaacatgcgctcagtttgccggactgctttgtgaagaagaaggtaatggtgccgataatgtccaatactgtggctactgtaaataccattttagtaagctgaaaaagagcaaacggggatctaataggtcatatgatcaaagtttaagtgattcttcctctcactctcaggataaacatcatgagaaagagaaaaaaaaatataaagagaaggacaaacacaaacagaaacacaagaagcagccagaaccatcacctgcattggttccatccttgactgttactacagaaaaaacttatacaagcactagcaacaactctatatctggatcattgaagcgcttggaagatactactgcacgatttacaaatgcaaatttccaggaagtctctgcacacacctctagtggaaaagatgtttcagagactagagggtcagagggcaaagggaagaaatcttcagctcacagctcaggtcaaaggggaagaaagcctggtggtggaagaaatccaggaacaactgtgtcagcagctagcccttttcctcaaggcagtttttcaggaactccaggcagtgtaaagtcatcttctggaagttcagtgcagtctccccaggatttcctgagctttacagactcagatctgcgtaatgacagttactctcactcccaacagtcatcagcaaccaaagatgtacataaaggagagtctggaagccaggaagggggggtaaatagttttagtaccttaattggcctcccttcaacctcagctgttacttcacagcctaaaagctttgaaaattcacctggagatttgggtaattccagccttcctacagcaggatataagcgggctcaaacttctggcatagaagaagaaactgtaaaggaaaagaaaaggaaaggaaataaacaaagtaagcatgggcctggcagacccaaaggaaacaaaaatcaagagaatgtttctcatctctcagtttcttctgcttcaccaacatcatctgtagcatcagctgcaggaagcataacaagctctagtctgcagaaatctcctacattgctcaggaatggaagtttacagagcctcagtgttggctcatctccagttggttcagaaatttccatgcagtatcggcatgatggagcttgcccaacaactaATATTGGTGGAGGCTTCAGTGGGAGATGGCTTCACTGGAGATATTGCGATTGATGATCTGTCATTTATGGACTGCACCCTCTACCCTGGTAATTTGCCAGCAGACCTCCCAACTCCACCAGAAACGTCAGTTCCTGTAACATTACCTCCACACAACTGCACAGACAATGAATTTATCTGCAGGTCTGATGGTCACTGCATTGAAAAAATGCAGAAATGTGATTTTAAATATGACTGCCCTGACAAATCAGATGAAGCATCCTGTGTTATGGAAGTTTGCAGCTTTGAGAAAAGAAGCCTGTGTAAATGGTATCAACCAATCCCAGTACATTTGCTTCAAGATTCAAACACATTCAGGTGGGGGCTTGGGAACGGGATCAGCATTCATCATGGGGAAGAAAACCACAGGCCATCAGTGGATCATACACAAAATACCACTGATGGCTGGTACCTGTATGCTGACAGTTCTAATGGGAAATTTGGTGACACGGCTGACATTCTCACTCCTATCATTTCACTCACGGGACCAAAATGTACCTTGGTGTTCTGGACACATATGAATGGGGCCACCGTTGGTTCTCTCCAGGTGCTCATCAAGAAAGATAACGTTACTTCTAAATTGTGGGCTCAAACTGGACAGCAAGGTGCACAGTGGAAGAGAGCAGAAGTGTTTTTAGGCATTCGTTCACATACACAGATTGTCTTCAGAGCCAAACGTGGTATCAGTTACATAGGAGATGTAGCAGTGGATGATATTTCCTTCCAAGATTGCTCCCCTTTGCTTAGCCCAGAGAGAAAGTGTACTGATCATGAATTCATGTGTGCTAATAAGCACTGCATTGCCAAAGACAAGCTGTGTGATTTTGTGAATGATTGTGCTGATAATTCAGATGAGACTACTTTCATTTGCCGTACCTCCAGTGGGCGCTGTGATTTCGAATTTGATCTTTGTTCCTGGAAGCAGGAGAAAGATGAGGACTTTGACTGGAACCTGAAAGCTAGCAGCATCCCTGCAGCAGGCACAGAGCCAGCAGCAGATCACACTTTGGGAAATTCATCTGGTCATTACATCTTTATAAAGAGTTTGTTTCCTCAGCAGCCCATGAGAGCTGCCAGAATTTCAAGTCCAGTTATAAGTAAGAGAAGCAAAAACTGCAAGATTATTTTTCATTATCACATGTATGGAAATGGCATTGGGGCACTCACCTTAATGCAGGTGTCAGTCACAAACCAAACGAAGGTTCTACTTAACCTCACTGTAGAACAAGGCAATTTCTGGCGGAGAGAAGAACTGTCACTGTTTGGTGATGAAGACTTCCAACTCAAATTTGAAGGTAGAGTTGGGAAAGGTCAGCGTGGAGACATTGCACTTGATGACATTGTGCTTACAGAAAATTGTCTATCACTCCATGATTCCGTGCAAGAAGAACTGGCAGTGCCTCTTCCAACAGGTTTCTGCCCACTTGGCTATAGGGAATGTCATAATGGAAAATGCTATAGGCTGGAACAAAGCTGTAACTTCGTAGATAACTGTGGAGATAATACTGATGAAAATGAGTGTGGTAGCTCCTGTACTTTTGAAAAAGGCTGGTGTGGCTGGCAAAACTCCCAGGCTGACAACTTTGATTGGGTTTTAGGGGTTGGCTCTCATCAAAGCTTAAGACCTCCCAAAGACCACACACTTGGAAATGAAAATGCTATCTTGTTGATGCGACGGCATAAATATCCCATCAGATCAGTTAATCTGCATACTGTGAAGCACGTGCTAAAAGCACAGACAGTTGGAAATTGTTCTGTCAGCAAGCTAGAGGCGAGGCTATTAGATTTTCTTTCTGTTCCAAATGAAAATACTTTTGGCAGCTCAGATCATACGAATTGGCACTTCATGTATCTGGAAGCTACTGCAGTGGGCCTTCGGGGTGACAAAGCACACTTCAGGAGTACCATGTGGCGAGAATCCAGTGCAGCCTGCACCATGAGCTTCTGGTATTTCGTATCTGCAAAGGCCACAGGATCCATTCAGATTCTCATCAAGCGGGGGCGGAGGAGAAGGCGGGCTCCCAATCCGGTTCTATCCGGTTCTCCCACCATCCCCCGCCAGGGGTCTCAGCAGCTCGGAGGGTGGAGGGGCGGCAGCGCCAGGCACCGCGCACGCGCCTTTCCGGAGCCAGAATGCCCAAGAGGAAGGTCAGCTCTGCTGAAGGGGCCGCCACAGGAAAAGCCTAACAGGAGGTCAGCGCTGTTGTCAGTGGGAGAGATCTCTGAGCTTTGTCCGGAAATCACTGATTTTTTGTGCCGGGACAAGAAGTGCATTGCATCCCACCTTCTTTGTGACTATAAGCCAGACTGCTCTGATAGGTCTGATGAAGCTCACTGTGCACATTATACAAGCACAACAGGAAGCTGCAATTTTGAAACAAGTTCAGGAAACTGGACCACAGCCTGCAGTCTTACTCAAGACTCTGAGGATGACTTGGACTGGGCCATTGGCAGCAGAATTCCTGCCAAAGCATTAATTCCAGACTCTGATCACACGCCAGGTAGTGGTCAGCACTTCCTGTACGTCAACTCATCTGGCTCCAAGGAAGGATCCGTTGCCAGAATTACTACTTCCAAATCCTTCCCAGCAAGCCTTGGAATGTGTACTGTTCGGTTCTGGTTCTACATGATTGATCCCAGGAGTATGGGAATATTAAAGGTGTATACCATTGAAGAATCGGGGCTAAACATCCTGGTGTGGTCAGTGATTGGAAATAAAAGAACGGGATGGACATATGGCTCTGTGCCTCTCTCCAGTAACAGTCCGTTTAAGGTGGCATTTGAAGCTGATTTGGATGGAAATGAGGACATCTTTATTGCTCTTGATGACATCTCTTTTACCCCAGAGTGTGTGACTGGAGGTCCTGTCCCAGTGCAGCCATCACCCTGTGAAGCTGATCAGTTTTCTTGTATCTACACACTCCAATGTGTCCCTCTCTCAGGGAAATGTGATGGACATGAAGACTGCATAGATGGATCTGATGAAATGGATTGTCCTCTCAGCCCCACCCCTCCACTCTGTAGTAACATGGAGTTCCCGTGCTCTACAGACGAGTGTATACCTTCCCTCCTGCTATGCGATGGAGTGCCCGACTGCCACTTTAATGAAGATGAGCTCATCTGCTCCAACAAAAGCTGTTCTAATGGAGCTCTGGTGTGTGCCTCCTCCAACAGCTGTATCCCAGCCCACCAGCGCTGTGATGGTTTTGCCGACTGCATGGATTTCCAGCTTGATGAGTCCAGCTGCTCCGATACATGGACTCTCCTGGGTATTGGATTAGCATTCCTGATGACTCACATCACAGTTGCAGTCTTGTGTTTTCTTGCAAACAGAAAGGTACCAATAAGGAAAACCGAGGGAAGTGGTAACTGTGCCTTTGTCAATCCAGTTTACGGGAACTGGAGCAACCCAGAGAAAACAGAGAGTTCTGTCTATTCCTTCTCAAACCCATTATATGGCACAACATCAGGAAGCCTGGAGACCCTGTCACATCATCTCAAATAG MVSSDRPVSLEDEVSHSMKEMIGGCCVCSDERGWAENPLVYCDGHGCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKRTDNGGWAHVVCALYIPEVQFANVSTMEPIVLQSVPHDRYNKTCYICDEQGRESKAATGACMTCNKHGCRQAFHVTCAQFAGLLCEEEGNGADNVQYCGYCKYHFSKLKKSKRGSNRSYDQSLSDSSSHSQDKHHEKEKKKYKEKDKHKQKHKKQPEPSPALVPSLTVTTEKTYTSTSNNSISGSLKRLEDTTARFTNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFPQGSFSGTPGSVKSSSGSSVQSPQDFLSFTDSDLRNDSYSHSQQSSATKDVHKGESGSQEGGVNSFSTLIGLPSTSAVTSQPKSFENSPGDLGNSSLPTAGYKRAQTSGIEEETVKEKKRKGNKQSKHGPGRPKGNKNQENVSHLSVSSASPTSSVASAAGSITSSSLQKSPTLLRNGSLQSLSVGSSPVGSEISMQYRHDGACPTTNIGGGFSGRWLHWRYCD**SVIYGLHPLPW*FASRPPNSTRNVSSCNITSTQLHRQ*IYLQV*WSLH*KNAEM*F*I*LP*QIR*SILCYGSLQL*EKKPV*MVSTNPSTFASRFKHIQVGAWERDQHSSWGRKPQAISGSYTKYH*WLVPVC*QF*WEIW*HG*HSHSYHFTHGTKMYLGVLDTYEWGHRWFSPGAHQER*RYF*IVGSNWTARCTVEESRSVFRHSFTYTDCLQSQTWYQLHRRCSSG*YFLPRLLPFA*PREKVY*S*IHVC**ALHCQRQAV*FCE*LC**FR*DYFHLPYLQWAL*FRI*SLFLEAGER*GL*LEPES*QHPCSRHRASSRSHFGKFIWSLHLYKEFVSSAAHESCQNFKSSYK*EKQKLQDYFSLSHVWKWHWGTHLNAGVSHKPNEGST*PHCRTRQFLAERRTVTVW**RLPTQI*R*SWERSAWRHCT**HCAYRKLSITP*FRARRTGSASSNRFLPTWL*GMS*WKML*AGTKL*LRR*LWR*Y**K*VW*LLYF*KRLVWLAKLPG*QL*LGFRGWLSSKLKTSQRPHTWK*KCYLVDATA*ISHQIS*SAYCEARAKSTDSWKLFCQQARGEAIRFSFCSK*KYFWQLRSYELALHVSGSYCSGPSG*QSTLQEYHVARIQCSLHHELLVFRICKGHRIHSDSHQAGAEEKAGSQSGSIRFSHHPPPGVSAARRVEGRQRQAPRTRLSGARMPKRKVSSAEGAATGKA*QEVSAVVSGRDL*ALSGNH*FFVPGQEVHCIPPSL*L*ARLL**V**SSLCTLYKHNRKLQF*NKFRKLDHSLQSYSRL*G*LGLGHWQQNSCQSINSRL*SHAR*WSALPVRQLIWLQGRIRCQNYYFQILPSKPWNVYCSVLVLHD*SQEYGNIKGVYH*RIGAKHPGVVSDWK*KNGMDIWLCASLQ*QSV*GGI*S*FGWK*GHLYCS**HLFYPRVCDWRSCPSAAITL*S*SVFLYLHTPMCPSLREM*WT*RLHRWI**NGLSSQPHPSTL**HGVPVLYRRVYTFPPAMRWSARLPL**R*AHLLQQKLF*WSSGVCLLQQLYPSPPAL*WFCRLHGFPA**VQLLRYMDSPGYWISIPDDSHHSCSLVFSCKQKGTNKENRGKW*LCLCQSSLRELEQPRENREFCLFLLKPIIWHNIRKPGDPVTSSQI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 (AF10) 1 Yes AL leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33223 ZHX1::TAF2 ENSG00000165156.15::ENSG00000064313.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2293 FALSE NA FALSE NA ZHX1 ENSG00000165156.15 protein_coding - - chr8:123248451-123275541:- chr8:123267273:- chr8:124260691-124287781:- chr8:124279513:- TAF2 ENSG00000064313.13 protein_coding - - chr8:119730774-119832863:- chr8:119806401:- chr8:120743014-120845103:- chr8:120818641:- chr8:123250456,chr8:123250460 chr8:119817070,chr8:119817071 NA NA chr8:124262696,chr8:124262700 chr8:120829310,chr8:120829311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:3.42Mb] 213 217 213 217 ONLY_REF_SPLICE YES_LDAS 4.5509 GT 1.8323 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33224 CSMD3::LINC00824 ENSG00000164796.18::ENSG00000254275.6 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CSMD3 ENSG00000164796.18 protein_coding - - chr8:112222928-113436939:- chr8:113098756:- chr8:113235157-114449168:- chr8:114110985:- LINC00824 ENSG00000254275.6 lncRNA - - chr8:128405269-128564679:- chr8:128428384:- chr8:129417515-129576925:- chr8:129440630:- chr8:113035514,chr8:113035519 chr8:128437423,chr8:128437425 NA NA chr8:114047743,chr8:114047748 chr8:129449669,chr8:129449671 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CSMD3:Oncogene"];INTRACHROMOSOMAL[chr8:14.97Mb] 112 117 112 117 ONLY_REF_SPLICE YES_LDAS 2.4236 GT 1.8892 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE CUB and Sushi multiple domains 3 2 ovarian cancer, oral SCC, lung cancer epithelial TSG missense, nonsense FALSE NA NA NA NA NA NA NA NA NA 33226 TATDN1::MTSS1 ENSG00000147687.19::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2311 FALSE NA FALSE NA TATDN1 ENSG00000147687.19 protein_coding - - chr8:124488485-124539458:- chr8:124539025:- chr8:125500726-125551699:- chr8:125551266:- MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124585161:- chr8:125563025-125740714:- chr8:125597402:- chr8:124528334 chr8:124589193 NA NA chr8:125540575 chr8:125601434 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none WH2|729-754|9.2e-11 ["Klijn_CellLines","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.01Mb];LOCAL_REARRANGEMENT:-:[11332] 73 0 73 0 ONLY_REF_SPLICE YES_LDAS 0.7726 GT 1.9219 AG 1.7232 ENST00000519776.5 1-22 ENST00000325064.9 386-2280 chr8|-|[0]124539025-124539046[0]<==>chr8|-|[2]124552992-124553692[1]|[0]124555742-124555904[0]|[2]124556232-124556405[0]|[2]124557681-124557875[0]|[2]124562782-124562992[2]|[1]124565662-124565759[0]|[2]124567071-124567178[0]|[2]124568379-124568536[1]|[0]124580551-124580562[1]|[0]124585087-124585161[1] atgagtcgcttcaagtttatcgAATATAAGAAAGCCCGCCAAGAGATAAAAAAGAAGTCCTCGGATACGCTGAAACTGCAGAAGAAAGCAAAAAAAGTGGACACTCTTGGGAGAGGTGATATCCAGCCTCAGTTGGACAGTGCTCTCCAAGATGTCAATGATAAGTATCTCTTATTGGAAGAAACAGAAAAGCAGGCTGTCCGGAAGGCTTTGATTGAAGAACGTGGCCGATTCTGTACCTTCATCTCTATGCTGCGGCCAGTGATTGAAGAAGAAATCTCAATGCTAGGGGAAATAACCCACCTTCAGACCATCTCGGAAGATCTAAAAAGCCTGACCATGGACCCTCACAAACTGCCCTCCTCAAGTGAACAGGTGATTCTGGACTTGAAAGGTTCTGATTACAGCTGGTCGTATCAGACGCCACCCTCTTCCCCCAGCACCACCATGTCCAGAAAGTCCAGTGTCTGCAGCAGCCTGAACAGTGTCAACAGCAGTGACTCCCGGTCCAGCGGCTCCCACTCGCATTCCCCCAGCTCACATTACCGCTACCGCAGCTCCAACCTGGCCCAGCAGGCTCCTGTGAGGCTGTCCAGCGTGTCCTCCCATGACTCAGGATTCATATCCCAGGATGCCTTCCAGTCCAAGTCACCATCCCCCATGCCGCCAGAGGCCCCCAACCAGTTGTCTAACGGGTTTTCTCACTATAGTTTATCAAGTGAGTCCCACGTGGGGCCCACGGGTGCAGGCCTTTTCCCTCATTGCCTGCCTGCCTCCCGCCTGCTCCCTCGGGTCACCTCTGTCCACCTTCCAGACTACGCTCATTATTACACCATTGGGCCCGGCATGTTCCCGTCATCTCAGATCCCTAGCTGGAAGGACTGGGCTAAGCCTGGGCCCTATGACCAGCCTCTGGTGAACACCCTGCAGCGCCGCAAAGAGAAGCGAGAACCGGACCCCAACGGGGGAGGACCCACTACCGCCAGCGGCCCACCTGCAGCAGCTGAGGAGGCTCAGAGACCACGGAGCATGACTGTATCGGCTGCCACCAGGCCTGGTGAGGAGATGGAGGCTTGTGAGGAGCTGGCCCTGGCCCTGTCTCGGGGCCTGCAGCTGGACACCCAGAGGAGCAGCCGGGACTCGCTTCAGTGCTCCAGCGGCTACAGCACCCAGACAACCACCCCCTGCTGCTCTGAGGACACCATCCCTTCCCAAGTTTCAGATTATGATTATTTCTCTGTAAGTGGTGACCAGGAGGCAGATCAGCAGGAGTTCGACAAGTCCTCCACCATTCCAAGAAACAGCGACATCAGCCAGTCCTACCGACGGATGTTCCAAGCCAAGCGTCCAGCCTCAACTGCTGGCCTCCCCACCACCCTGGGACCTGCTATGGTCACTCCAGGGGTTGCAACTATCCGACGGACCCCTTCCACCAAGCCTTCTGTCCGCCGGGGAACCATTGGAGCTGGTCCCATCCCCATCAAGACACCCGTGATCCCTGTCAAGACCCCAACCGTCCCAGACCTCCCAGGGGTGTTGCCAGCCCCTCCAGATGGGCCAGAAGAGCGGGGGGAGCACAGCCCTGAGTCGCCATCTGTGGGTGAGGGCCCCCAAGGTGTCACCAGCATGCCCTCCTCAATGTGGAGCGGCCAAGCTTCCGTTAACCCTCCACTTCCAGGCCCGAAGCCCAGTATCCCTGAGGAGCACAGACAGGCAATTCCAGAAAGTGAAGCTGAAGACCAGGAACGGGAACCCCCAAGTGCCACTGTCTCCCCAGGCCAGATTCCAGAGAGTGACCCTGCAGACCTGAGCCCAAGGGATACTCCACAAGGAGAAGACATGCTGAACGCCATCCGAAGGGGCGTGAAACTGAAGAAGACCACGACAAACGATCGCTCAGCCCCTCGCTTTTCTTAG MSRFKFIEYKKARQEIKKKSSDTLKLQKKAKKVDTLGRGDIQPQLDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQVILDLKGSDYSWSYQTPPSSPSTTMSRKSSVCSSLNSVNSSDSRSSGSHSHSPSSHYRYRSSNLAQQAPVRLSSVSSHDSGFISQDAFQSKSPSPMPPEAPNQLSNGFSHYSLSSESHVGPTGAGLFPHCLPASRLLPRVTSVHLPDYAHYYTIGPGMFPSSQIPSWKDWAKPGPYDQPLVNTLQRRKEKREPDPNGGGPTTASGPPAAAEEAQRPRSMTVSAATRPGEEMEACEELALALSRGLQLDTQRSSRDSLQCSSGYSTQTTTPCCSEDTIPSQVSDYDYFSVSGDQEADQQEFDKSSTIPRNSDISQSYRRMFQAKRPASTAGLPTTLGPAMVTPGVATIRRTPSTKPSVRRGTIGAGPIPIKTPVIPVKTPTVPDLPGVLPAPPDGPEERGEHSPESPSVGEGPQGVTSMPSSMWSGQASVNPPLPGPKPSIPEEHRQAIPESEAEDQEREPPSATVSPGQIPESDPADLSPRDTPQGEDMLNAIRRGVKLKKTTTNDRSAPRFS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33233 CNOT9::RUFY4 ENSG00000144580.15::ENSG00000188282.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2302 FALSE NA FALSE NA CNOT9 ENSG00000144580.15 protein_coding + + chr2:218568580-218597080:+ chr2:218568978:+ chr2:219433303-219461803:+ chr2:219433701:+ RUFY4 ENSG00000188282.13 protein_coding + + chr2:218034960-218090584:+ chr2:218083110:+ chr2:218899683-218955307:+ chr2:218947833:+ chr2:218572515 chr2:218082638 NA NA chr2:219437238 chr2:218947361 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["CCLE_StarF2019"] 32 10 32 10 ONLY_REF_SPLICE YES_LDAS 0.4445 GT 1.6895 AG 1.6895 ENST00000273064.11 1-24 ENST00000374155.7 1416-1824 chr2|+|[0]218568955-218568978[2]<==>chr2|+|[2]218083110-218083256[1]|[2]218089252-218089362[1]|[2]218089687-218089837[2] atgcacagcctggcgacggctgcgGTGTCAGGAAGAGAGAGCCGAGCTGCAGGCACAGCTGGAGCAGAAGCAACAGGAGGCTGAGAGGAGGGATGCCATGTACCAGGAGGAGCTTGGAGGGCAGCGGGACTTGGTCCAGGCCATGAAGAGGCGGGTGTTGGAACTGATCCAAGAGAAGGACCGCCTGTGGCAGAGGCTCCAGCATCTCTCTTCCATGGCTCCCGAGTGCTGTGTGGCCTGTAGCAAGATCTTTGGCCGATTTTCTCGGCGGTATCCATGCAGTGCTAGGACCAGCCTTGGGAGAGAGGAAAGTGAGCCACCAGGAGAAGCTGCCATGTGGAGGTGGAGGCTCTGGAGGGGTCGGGCATCAGGACACCCTTCAGGAGAGGGGAGACCTCCTGAGACAAACCAAGGGCATTCCACTGGGAGATGA MHSLATAAVSGRESRAAGTAGAEATGG*EEGCHVPGGAWRAAGLGPGHEEAGVGTDPREGPPVAEAPASLFHGSRVLCGL*QDLWPIFSAVSMQC*DQPWERGK*ATRRSCHVEVEALEGSGIRTPFRRGETS*DKPRAFHWEM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33234 BLVRA::COA1 ENSG00000106605.11::ENSG00000106603.20 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2297 FALSE NA FALSE NA BLVRA ENSG00000106605.11 protein_coding + + chr7:43758680-43807342:+ chr7:43792812:+ chr7:43798279-43846941:+ chr7:43832411:+ COA1 ENSG00000106603.20 protein_coding - - chr7:43608456-43729717:- chr7:43640649:- chr7:43648055-43769316:- chr7:43680248:- chr7:43800036,chr7:43799989,chr7:43799954 chr7:43642389,chr7:43642436,chr7:43642471 NA NA chr7:43839635,chr7:43839588,chr7:43839553 chr7:43681988,chr7:43682035,chr7:43682070 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GFO_IDH_MocA|9-125|5.7e-27^NAD_binding_3|59-120|1e-05^Biliv-reduc_cat|133-243|6e-52 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.03Mb];LOCAL_INVERSION:+:-:[28963] 32 35 32 35 ONLY_REF_SPLICE YES_LDAS 0.7091 GT 1.8323 AG 1.9219 ENST00000265523.9 1-352 ENST00000438444.5 265-441 chr7|+|[0]43771159-43771170[2]|[0]43787904-43788025[1]|[2]43791249-43791368[1]|[2]43792715-43792812[0]<==>chr7|-|[2]43639582-43639681[2]|[1]43640573-43640649[0] atgaatgcagagcccgagaggaagtttggcgtggtggtggttggtgttggccgagccggctccgtgcggatgagggacttgcggaatccacacccttcctcagcgttcctgaacctgattggcttcgtgtcgagaagggagctcgggagcattgatggagtccagcagatttctttggaggatgctctttccagccaagaggtggaggtcgcctatatctgcagtgagagctccagccatgaggactacatcaggcagttccttaatgctggcaagcacgtccttgtggaataccccatgacactgtcattggcggccgctcaggaactgtgggagctggctgagcagaaagTTGAAGATTCCTGTCTCTGGATCCAAATCAGAGGGCCTTCTCTACGTCCACTCATCCAGAGGTGGCCCCTTTCAGAGGTGGCACCTTGACGAGGTCTTTTTAGAGCTCAAGGATGGTCAGCAGATTCCTGTGTTCAAGCTCAGTGGGGAAAACGGTGATGAAGTGAAAAAGGAGTAG MNAEPERKFGVVVVGVGRAGSVRMRDLRNPHPSSAFLNLIGFVSRRELGSIDGVQQISLEDALSSQEVEVAYICSESSSHEDYIRQFLNAGKHVLVEYPMTLSLAAAQELWELAEQKVEDSCLWIQIRGPSLRPLIQRWPLSEVAP*RGLFRAQGWSADSCVQAQWGKR**SEKGV FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Biliverdin reductase A Atypical BLVRA P53004 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33236 EIF3H::HAS2-AS1 ENSG00000147677.12::ENSG00000248690.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 4219 FALSE NA EIF3H ENSG00000147677.12 protein_coding - - chr8:116642130-116766925:- chr8:116755666:- chr8:117654369-117779164:- chr8:117767905:- HAS2-AS1 ENSG00000248690.8 lncRNA + + chr8:121639293-121994185:+ chr8:121888825:+ chr8:122651533-123006424:+ chr8:122901064:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:4.87Mb] 27 92 27 14.21 ONLY_REF_SPLICE YES_LDAS 0.4362 GT 1.9899 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33237 HSD17B4::TNFAIP8 ENSG00000133835.18::ENSG00000145779.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2300 FALSE NA FALSE NA HSD17B4 ENSG00000133835.18 protein_coding + + chr5:119452465-119637199:+ chr5:119527219:+ chr5:118788160-118972894:+ chr5:118862914:+ TNFAIP8 ENSG00000145779.8 protein_coding + + chr5:119268692-119399688:+ chr5:119392816:+ chr5:118604387-118735383:+ chr5:118728511:+ chr5:119527522 chr5:119349323 NA NA chr5:118863217 chr5:118685018 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame adh_short|79-221|2e-35^adh_short_C2|81-221|4.3e-30^KR|102-204|3.4e-15^adh_short|311-331|1.1^MaoC_dehydrat_N|399-470|8e-06^MaoC_dehydratas|509-625|9.1e-44^MaoC_dehydrat_N|534-601|0.064^AbrB-like|594-628|2e-05^SCP2|653-756|2.5e-28^Alkyl_sulf_C|670-755|1e-07 DUF758-PARTIAL|~32-196|4.4e-86^DUF2857-PARTIAL|~32-77|0.053^CAP12-PCTIR_TIR-PARTIAL|~32-42|1.2^LYRM2-like|39-96|2.1e-05^ArAE_1_C|42-110|7.2e-05^TetR-C_39|51-109|0.00026^Pico_P2B|63-97|2.5e-05^CAP12-PCTIR_TIR|66-126|0.00014^DUF6331|77-107|0.24^DUF2857|91-149|3.4e-05^DUF6331|92-141|0.0009^LYRM2-like|124-142|0.5^DUF6331|129-171|0.0043^TetR-C_39|137-146|6 ["TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.05Mb];LOCAL_REARRANGEMENT:+:[52755] 21 26 21 26 ONLY_REF_SPLICE YES_LDAS 0.4975 GT 1.8062 AG 1.9899 ENST00000414835.7 1-1842 ENST00000503646.1 32-597 chr5|+|[0]119452754-119452821[1]|[2]119456315-119456368[1]|[2]119471636-119471700[0]|[1]119473908-119474015[0]|[1]119474401-119474460[0]|[1]119475706-119475727[1]|[2]119475824-119475870[0]|[1]119477417-119477501[1]|[2]119478834-119479021[0]|[1]119489192-119489283[2]|[0]119492100-119492124[0]|[1]119493818-119493946[0]|[1]119496543-119496646[2]|[0]119499317-119499553[2]|[0]119502041-119502092[0]|[1]119506818-119506889[0]|[1]119509141-119509244[2]|[0]119514981-119515046[2]|[0]119525216-119525285[0]|[1]119525917-119526023[2]|[0]119527133-119527219[2]<==>chr5|+|[1]119392816-119393381[2] atggttattcttgaggcaccgcatctcttgaggaggaaagagccggaaacacctggtctctcaagcaggattgggccgagcctatgccctggcttttgcagaaagaggagcgttagttgttgctttcaaaatctatgcaataaccctatggagaagatcatttcacaatgcagattctttgtttcaatgaatgatttgggaggggacttcaaaggagttggtaaaggctccttagctgctgataaggttgttgaagaaataagaaggagaggtggaaaagcagtggccaactatgattcagtggaagaaggagagaaggttgtgaagacagccctggatgcttttggaagaatagatgttgtggtcaacaatgctggaattctgagggatcgttcctttgctaggataagtgatgaagactgggatataatccacagagttcatttgcggggttcattccaagtgacacgggcagcatgggaacacatgaagaaacagaagtatggaaggattattatgacttcatcagcttcaggaatatatggcaactttggccaggccaattatagtgctgcaaagttgggtcttctgggccttgcaaattctcttgcaattgaaggcaggaaaagcaacattcattgtaacaccattgctcctaatgcgggatcacggatgactcagacagttatgcctgaagatcttgtggaagccctgaagccagagtatgtggcacctcttgtcctttggctttgtcacgagagttgtgaggagaatggtggcttgtttgaggttggagcaggatggattggaaaattacgctgggagcggactcttggagctattgtaagacaaaagaatcacccaatgactcctgaggcagtcaaggctaactggaagaagatctgtgactttgagaatgccagcaagcctcagagtatccaagaatcaactggcagtataattgaagttctgagtaaaatagattcagaaggaggagtttcagcaaatcatactagtcgtgcaacgtctacagcaacatcaggatttgctggagctattggccagaaactccctccattttcttatgcttatacggaactggaagctattatgtatgcccttggagtgggagcgtcaatcaaggatccaaaagatttgaaatttatttatgaaggaagttctgatttctcctgtttgcccaccttcggagttatcataggtcagaaatctatgatgggtggaggattagcagaaattcctggactttcaatcaactttgcaaaggttcttcatggagagcagtacttagagttatataaaccacttcccagagcaggaaaattaaaatgtgaagcagttgttgctgatgtcctagataaaggatccggtgtagtgattattatggatgtctattcttattctgagaaggaacttatatgccacaatcagttctctctctttcttgttggctctggaggctttggtggaaaacggacatcagacaaagtcaaggtagctgtagccatacctaatagacctcctgatgctgtacttacagataccacctctcttaatcaggctgctttgtaccgcctcagtggagactggaatcccttacacattgatcctaactttgctagtctagcaggttttgacaagcccatattacatggattatgtacatttggattttctgccaggcgtgtgttacagcagtttgcagataatgatgtgtcaagattcaaggcaattaaggctcgttttgcaaaaccagtatatccaggacaaactctacaaactgagatgtggaaggaaggaaacagaattcattttcaaaccaagTGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTCAGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAGTAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAGATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAGATGAGCTAGCATTGATGGAGAAATTTAAGAAGAAAGTTCATCAGCTTGCTATGACCGTGGTCAGTTTCCATCAGGTGGATTATACCTTTGACCGGAATGTGTTATCCAGGCTGTTAAATGAATGCAGAGAGATGCTGCACCAAATCATTCAGCGCCACCTCACTGCCAAGTCACATGGACGGGTTAATAATGTGTTTGATCATTTTTCAGATTGTGAATTTTTGGCTGCCTTGTATAATCCTTTTGGGAATTTTAAACCCCACTTACAAAAACTATGTGATGGTATCAACAAAATGTTGGATGAAGAGAACATATGA MVILEAPHLLRRKEPETPGLSSRIGPSLCPGFCRKRSVSCCFQNLCNNPMEKIISQCRFFVSMNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQKNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDSEGGVSANHTSRATSTATSGFAGAIGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVIIMDVYSYSEKELICHNQFSLFLVGSGGFGGKRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAIKARFAKPVYPGQTLQTEMWKEGNRIHFQTKWPQMSLIPKTWPFRHKRRSWVKWCPNPSPPP**TTQVVRCWMSSTE*PGSTPKTRRRQRRSSRTSSRQSSSWPFFIGIISLIKMS*H*WRNLRRKFISLL*PWSVSIRWIIPLTGMCYPGC*MNAERCCTKSFSATSLPSHMDGLIMCLIIFQIVNFWLPCIILLGILNPTYKNYVMVSTKCWMKRTY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Stomach adenocarcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma STOMACH,CERVIX exact 118850741|118850741,118792063|118788328 FALSE|FALSE,FALSE|FALSE 118728511|118727060,118728511|118728511 TRUE|FALSE,TRUE|TRUE YES,PARTIALLY Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33238 CMC1::ZCWPW2 ENSG00000187118.14::ENSG00000206559.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2299 FALSE NA FALSE NA CMC1 ENSG00000187118.14 protein_coding + + chr3:28241584-28325142:+ chr3:28263380:+ chr3:28283075-28366633:+ chr3:28304871:+ ZCWPW2 ENSG00000206559.8 protein_coding + + chr3:28348721-28538122:+ chr3:28435110:+ chr3:28390212-28579613:+ chr3:28476601:+ chr3:28287081,chr3:28287077 chr3:28428924,chr3:28428917 NA NA chr3:28328572,chr3:28328568 chr3:28470415,chr3:28470408 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Cmc1|19-87|3.8e-22^Ribosomal_S2|22-64|9.9e-05^NDUF_B7|26-65|4.6e-06^F_T4SS_TraN|27-62|4.3e-07^MTCP1|28-44|0.00012^Pet191_N|28-43|0.016^Pet191_N|29-89|0.018^GCK|30-76|0.00022^CHCH|30-42|0.012^CHCH|31-63|0.00015^MTCP1|52-70|0.022^NDUF_B7|74-85|0.12^CHCH|74-79|1.7^NDUF_B7|85-98|0.4 ATG5_UblB-PARTIAL|~333-350|5.2e-05 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.02Mb];NEIGHBORS[24004] 21 34 21 34 ONLY_REF_SPLICE YES_LDAS 0.5821 GT 1.9219 AG 1.9899 ENST00000466830.6 1-109 ENST00000383768.7 333-1071 chr3|+|[0]28241794-28241812[0]|[1]28263291-28263380[0]<==>chr3|+|[2]28435110-28435269[2]|[0]28478814-28478931[0]|[1]28492127-28492173[2]|[0]28514064-28514122[1]|[2]28515554-28515621[0]|[1]28520992-28521116[2]|[0]28524527-28524688[2] atggcgctcgaccccgcagaccagcatctcagacatgtcgaaaaagatgttttgatccctaaaataatgagagaaaaggccaaagagaggtgttctgaacaagttcaagTTGGCCAGGAATACTTTGCCCTGACCGTTTTAAAGGGAAATATGTAACTTATGACCCGGATGGAAATGTTGAAGAGTATCACATAGAATTCCTGGGCGATCCCCATTCAAGATCATGGATAAAGGCAACATTCGTTGGACATTATAGTATCACATTAAAGCCAGAAAAGTGTAAGAATAAAAAGAAGTGGTATAAAAGTGCACTACAAGAAGCATGTCTACTCTATGGATATTCTCATGAGCAAAGACTGGAAATGTGCTGCCTATCAAAACTACAAGATAAATCCGAAACACATGACAAAGTTGCTGCACTGGTCAAGAAAAGGAAGCAGACTTCTAAAAATAATATTGAAAAGAAGAAGCCCAAATTTAGAAAAAGGAAAAGGAAAGCAATTTTAAAATGCTCTTTTGAAAATGTTTATTCTGATGATGCCTTATCAAAGGAGAACAGGGTTGTCTGTGAGACGGAAGTTTTACTAAAAGAGCTGGAGCAAATGCTGCAGCAAGCACTGCAACCCACAGCCACACCTGATGAATCAGAAGAAGGACATGGAGAGGAAATAAATATGGGAGAAAAGTTATCTAAATGCAGCCCAGAAGCTCCTGCAGGCAGTCTGTTTGAAAACCACTATGAAGAGGACTATCTTGTAATTGATGGGATAAAATTAAAAGCTGGAGAATGTATTGAGGATATAACTAATAAATTTAAAGAAATAGATGCTTTGATGTCTGAGTTTTAG MALDPADQHLRHVEKDVLIPKIMREKAKERCSEQVQVGQEYFALTVLKGNM*LMTRMEMLKSIT*NSWAIPIQDHG*RQHSLDIIVSH*SQKSVRIKRSGIKVHYKKHVYSMDILMSKDWKCAAYQNYKINPKHMTKLLHWSRKGSRLLKIILKRRSPNLEKGKGKQF*NALLKMFILMMPYQRRTGLSVRRKFY*KSWSKCCSKHCNPQPHLMNQKKDMERK*IWEKSYLNAAQKLLQAVCLKTTMKRTIL*LMG*N*KLENVLRI*LINLKK*ML*CLSF FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Large_intestine,Nasopharynx no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33241 SMCHD1::XPC ENSG00000101596.17::ENSG00000154767.15 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2306 FALSE NA FALSE NA SMCHD1 ENSG00000101596.17 protein_coding + + chr18:2655726-2805017:+ chr18:2796521:+ chr18:2655725-2805015:+ chr18:2796519:+ XPC ENSG00000154767.15 protein_coding - - chr3:14145147-14178621:- chr3:14173062:- chr3:14186647-14220121:- chr3:14214562:- chr18:2797900,chr18:2797898,chr18:2797896 chr3:14174528,chr3:14174530,chr3:14174530 NA NA chr18:2797898,chr18:2797896,chr18:2797894 chr3:14216028,chr3:14216030,chr3:14216030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HATPase_c_3|143-275|1.2e-14^HATPase_c|144-207|2.5e-06^IFT20|1616-1704|0.0017^SMC_hinge|1722-1846|1.5e-15 DUF4820-PARTIAL|~104-133|6.8e-05^BHD_2|116-129|2.8^Rad4|120-164|1.1^BHD_2|322-344|1.5^DUF4820|369-413|0.37^SOG2|385-566|1.3e-05^BHD_2|392-406|7^Rad4|501-625|1.5e-26^zf-B_box|532-549|9e-05^BHD_1|632-681|3.3e-19^BHD_2|685-744|1e-18^BHD_3|751-823|1.5e-29 ["XPC:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr18--chr3] 15 10 15 10 ONLY_REF_SPLICE YES_LDAS 0.2646 GT 1.6049 AG 1.9329 ENST00000320876.11 1-5993 ENST00000285021.12 104-2823 chr18|+|[0]2656076-2656261[2]|[0]2666157-2666232[0]|[1]2666870-2667031[0]|[1]2673281-2673363[2]|[0]2674015-2674145[1]|[2]2688394-2688508[2]|[0]2688628-2688747[2]|[0]2694527-2694693[1]|[2]2697032-2697122[2]|[0]2697831-2698041[0]|[1]2700539-2700659[1]|[2]2700735-2700918[2]|[0]2703692-2703886[2]|[0]2705694-2705807[2]|[0]2706364-2706470[1]|[2]2707563-2707645[0]|[1]2707807-2707920[0]|[1]2718158-2718235[0]|[1]2718315-2718434[0]|[1]2722519-2722663[1]|[2]2724899-2724995[2]|[0]2726452-2726524[0]|[1]2728457-2728596[2]|[0]2729275-2729409[2]|[0]2732265-2732492[2]|[0]2738397-2738545[1]|[2]2739432-2739520[0]|[1]2740703-2740821[2]|[0]2743761-2743928[2]|[0]2747522-2747647[2]|[0]2750043-2750122[1]|[2]2750350-2750507[0]|[1]2751278-2751393[2]|[0]2752488-2752552[1]|[2]2760652-2760739[2]|[0]2762105-2762236[2]|[0]2763637-2763789[2]|[0]2769694-2769820[0]|[1]2769989-2770108[0]|[1]2771533-2771618[2]|[0]2772250-2772372[2]|[0]2775734-2775924[1]|[2]2777806-2777915[0]|[1]2778169-2778239[2]|[0]2784450-2784621[0]|[1]2795949-2796107[0]|[1]2796407-2796521[1]<==>chr3|-|[2]14145941-14146159[0]|[2]14147290-14147379[0]|[2]14147908-14148001[2]|[1]14148562-14148731[0]|[2]14148814-14148948[0]|[2]14152335-14152416[2]|[1]14156335-14156495[0]|[2]14158011-14158892[0]|[2]14159741-14159830[0]|[2]14164813-14164933[2]|[1]14165428-14165585[0]|[2]14167169-14167253[2]|[1]14168257-14168380[1]|[0]14170438-14170550[2]|[1]14172867-14173062[1] atggcagcggcggacggcggcgggcctggtggggcctctgtggggactgaggaggatggcggaggcgtcggccacaggacggtgtacttgtttgatcggcgcgaaaaggagtccgagctcggggaccggcctctgcaggtcggggagcgctcggactacgcgggatttcgcgcgtgtgtgtgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaagaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttatacctgctacagtcggtcaatcagttactactgacagctacgaaagaacgaattgacttcttacctcactatgacacactggttaaaagtggcatgtatgaatattatgccagtgaaggacaaaatcctttgccatttgctcttgcggaattaattgacaattcattgtctgctacttctcgtaacattggggttagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgttgcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtcaaaattcacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcacgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaatgatgatgaaagatttctacatcatcttatcatagaggagaaggaaaaagatagctttactgctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttccacctttggacacgacagttagcgcatatttatcactactatattcatggcccaaaaggaaatgaaatacgaacatcaaaagaagttgaacctttcaacaatattgatattgaaatttctatgtttgaaaaagggaaggtacctaagattgtcaacctaagggaaatacaagacgacatgcagacgttgtatgtaaacacagcagctgatagttttgaattcaaagctcatgttgaaggagatggtgtagtggaagggattatccgttatcatccattcttatatgatagagaaacttaccctgatgatccatgctttccatcaaaattaaaagatgaagatgatgaagatgattgtttcatacttgagaaagcagctagagggaaaaggcctatttttgaatgtttttggaatggacgattaataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggcttgcaccaattgaatgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcacaaataaattgacgtttatggatcttgagctaaaattgaaagataagaacaccctttttacaaggattttaaatggacaggaacagcgaatgaaaattgacagagaatttgctttgtggctgaaggactgtcatgagaagtatgataaacaaataaaatttacactttttaagggagtaattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatatgcagcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagacacttcccctcttttatggaagcatagtaagattttttctttatggcgatcatgatggagaagtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactatatgatgaagtaagaactgtgccaattgcaaagctggataggacagttgctgagaaagctgttaaaaaatatgtagaagatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaattattgcctaatgaggttaggcctgctggaacccctattggtgcgttaagaattgaaatactgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagccatggagggtcaaagaaactcctggttgagctcaaagttattttacattcttcaagtggaaataaagagattatttcgcatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcagaagttggggaattataccttgaaattacaagttgtgttgaatgaaagtaatgcagacacttatgcaggaagaccactaccatctaaagcaattaagttttctgttaaagagggtaagccagagaaattttcatttggtcttctggatcttccttttcgtgttggagttccatttaatatccctctggagtttcaggatgaatttggtcataccagtcaactagtaactgatattcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccaaattgtgtaattcgaggtgttacagccaagggccctgtaaactcttgtcaaggcaagaattataatctgaaggttactctgcctggcttaaaagaagactcacagattttgaaaattagattactacctggtcaccctcgtcgactgaaagtgaaacctgattctgaaattttagttatagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcagacaacataacagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccagtctatgttgtagattgcagtagttctggaaccagtattttaacaggatctgcaattcaagttcagaatattaaaaaagaccagacgcttaaagcaagaattgaaatacctagttgtaaagatgtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagactacaaatattcagtgtagaaggacaaaaggcaattcagatcaaacatcaggatgaggttaattggatagcgggtgatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatcaatataacatcagctttagcagaaaaaattaaagttaattggactcctgagattaacaaagaacacttgctacagggtctgcttcctgatgtgcaagtaccaacatctgtaaaagatatgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcgtttacagtaagaccacttcctgatgaacctaaacatttaaaatgtgaaatgaaaggaggaaaaacagtacagatgggccaagagcttcaaggagaagtagttataataattacagatcagtacggaaatcagattcaagcattttcaccaagttctttatcttctttgtcaattgctggggttggacttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataagtgtaagaggcatcaaatttattccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgactttattcgagtgcaactaatttctggacctcctgctaaacttctccttatagactggccagaactaaaggagtccattccagtgattaatggaagagatttacagaaccctattattgttcaactttgtgatcagtgggataatccagcaccggtacaacatgttaaaataagtcttacaaaagctagcaatttaaagctcatgccttcaaaccaacagcataaaacagatgagaaaggcagggctaatttgggagtattcagtgtttttgcccctaggggagagcatactcttcaggttaaagccatctataacaaaagtatcatagaaggacctataattaagttaatgattcttccagacccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcatccttcttagcagggggtcttttcactgattttatgattagtgttatttctgaagatgacagtatcattaaaaacattaatccagcacgtatttccatgaaaatgtggaagctgtctaccagtgggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagatggctgcttctatttcagggataaagtaattcctaataaagtggggacatattgtatccagtttggttttatgatggataaaacaaatattctcaacagtgaacaggttatagttgaagtcctgcctaatcaacctgtgaagttagtacctaaaattaaaccacctacaccagctgtttcaaatgttcgctcagttgccagtaggaccttggtcagagatctacatcttagtatcacggatgactacgacaaccatactggaattgatttggttggcactataatagccaccattaaaggctctaatgaggaagatactgataccccactttttattgggaaagttagaacacttgaattccccttcgtgaatggttcggctgaaatcatgagtctggtgctggcagaaagtagtcctggaagggatagtactgaatattttattgtatttgagccccggctaccacttttatcaagaaccttagaaccatatatcctaccgttcatgttttacaatgatgttaagaagcagcaacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattgttatgtataaaagtttatttgaagccagccaacagcttcttaatgaaatgaaatgtcaagttgaagaagcaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacattcctacaacacaacaggtgccacacattgaagcacttctgaaaagaaagctatcagaacaagaagaactgaagaaaaaacctagaagatcgtgtactcttccaaactatactaaaggcagtggagatgttttgggaaagattgcacatctagcacaaattgaagatgatagagctgcgatggttatttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgacgctgcacgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttacaagaagactcttccagattggaaaagatctctacctcatttccgaaatggaaaattgtattttaaacccattggagatccagtctttgctcgagacttgttaacatttccagataatgtagaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctggatgcggccaatcattatagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagatggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagctcctccaatggataaacttcggggaatggtatttggagctccagttccaaaacagtgtctgatcttaggggaacaaatagatcttcttcagcagtatcgttctgctgtgtgcaaactagacagtgtgaataaggatcttaacagtcaattagagtaccttcgcactccggatatgaggaagaaaaagcaagaacttgatgaacatgagaaaaatctcaaactaatagaggaaaaactaggtatgactcccatacgtaagtgtaatgactcattgcgtcattcaccaaaggttgagacgacagattgtccagttcctcctaaaagaatgagacgagaagctacaagacaaaatagATGCCTTTGAAGATGAGAAACCCCCAAAGAAGAGCCTTCTCTCCAAAGTTTCACAAGGAAAGAGGAAAAGAGGCTGCAGTCATCCTGGGGGTTCAGCAGATGGTCCAGCAAAAAAGAAAGTGGCCAAGGTGACTGTTAAATCTGAAAACCTCAAGGTTATAAAGGATGAAGCCCTCAGCGATGGGGATGACCTCAGGGACTTTCCAAGTGACCTCAAGAAGGCACACCATCTGAAGAGAGGGGCTACCATGAATGAAGACAGCAATGAAGAAGAGGAAGAAAGTGAAAATGATTGGGAAGAGGTTGAAGAACTTAGTGAGCCTGTGCTGGGTGACGTGAGAGAAAGTACAGCCTTCTCTCGATCTCTTCTGCCTGTGAAGCCAGTGGAGATAGAGATTGAAACGCCAGAGCAGGCGAAGACAAGAGAAAGAAGTGAAAAGATAAAACTGGAGTTTGAGACATATCTTCGGAGGGCGATGAAACGTTTCAATAAAGGGGTCCATGAGGACACACACAAGGTTCACCTTCTCTGCCTGCTAGCAAATGGCTTCTATCGAAATAACATCTGCAGCCAGCCAGATCTGCATGCTATTGGCCTGTCCATCATCCCAGCCCGCTTTACCAGAGTGCTGCCTCGAGATGTGGACACCTACTACCTCTCAAACCTGGTGAAGTGGTTCATTGGAACATTTACAGTTAATGCAGAACTTTCAGCCAGTGAACAAGATAACCTGCAGACTACATTGGAAAGGAGATTTGCTATTTACTCTGCTCGAGATGATGAGGAATTGGTCCATATATTCTTACTGATTCTCCGGGCTCTGCAGCTCTTGACCCGGCTGGTATTGTCTCTACAGCCAATTCCTCTGAAGTCAGCAACAGCAAAGGGAAAGAAACCTTCCAAGGAAAGATTGACTGCGGATCCAGGAGGCTCCTCAGAAACTTCCAGCCAAGTTCTAGAAAACCACACCAAACCAAAGACCAGCAAAGGAACCAAACAAGAGGAAACCTTTGCTAAGGGCACCTGCAGGCCAAGTGCCAAAGGGAAGAGGAACAAGGGAGGCAGAAAGAAACGGAGCAAGCCCTCCTCCAGCGAGGAAGATGAGGGCCCAGGAGACAAGCAGGAGAAGGCAACCCAGCGACGTCCGCATGGCCGGGAGCGGCGGGTGGCCTCCAGGGTGTCTTATAAAGAGGAGAGTGGGAGTGATGAGGCTGGCAGCGGCTCTGATTTTGAGCTCTCCAGTGGAGAAGCCTCTGATCCCTCTGATGAGGATTCCGAACCTGGCCCTCCAAAGCAGAGGAAAGCCCCCGCTCCTCAGAGGACAAAGGCTGGGTCCAAGAGTGCCTCCAGGACCCATCGTGGGAGCCATCGTAAGGACCCAAGCTTGCCAGCGGCATCCTCAAGCTCTTCAAGCAGTAAAAGAGGCAAGAAAATGTGCAGCGATGGTGAGAAGGCAGAAAAAAGAAGCATAGCTGGTATAGACCAGTGGCTAGAGGTGTTCTGTGAGCAGGAGGAAAAGTGGGTATGTGTAGACTGTGTGCACGGTGTGGTGGGCCAGCCTCTGACCTGTTACAAGTACGCCACCAAGCCCATGACCTATGTGGTGGGCATTGACAGTGACGGCTGGGTCCGAGATGTCACACAGAGGTACGACCCAGTCTGGATGACAGTGACCCGCAAGTGCCGGGTTGATGCTGAGTGGTGGGCCGAGACCTTGAGACCATACCAGAGCCCATTTATGGACAGGGAGAAGAAAGAAGACTTGGAGTTTCAGGCTAAACACATGGACCAGCCTTTGCCCACTGCCATTGGCTTATATAAGAACCACCCTCTGTATGCCCTGAAGCGGCATCTCCTGAAATATGAGGCCATCTATCCCGAGACAGCTGCCATCCTTGGGTATTGTCGTGGAGAAGCGGTCTACTCCAGGGATTGTGTGCACACTCTGCATTCCAGGGACACGTGGCTGAAGAAAGCAAGAGTGGTGAGGCTTGGAGAAGTACCCTACAAGATGGTGAAAGGCTTTTCTAACCGTGCTCGGAAAGCCCGACTTGCTGAGCCCCAGCTGCGGGAAGAAAATGACCTGGGCCTGTTTGGCTACTGGCAGACAGAGGAGTATCAGCCCCCAGTGGCCGTGGACGGGAAGGTGCCCCGGAACGAGTTTGGGAATGTGTACCTCTTCCTGCCCAGCATGATGCCTATTGGCTGTGTCCAGCTGAACCTGCCCAATCTACACCGCGTGGCCCGCAAGCTGGACATCGACTGTGTCCAGGCCATCACTGGCTTTGATTTCCATGGCGGCTACTCCCATCCCGTGACTGATGGATACATCGTCTGCGAGGAATTCAAAGACGTGCTCCTGACTGCCTGGGAAAATGAGCAGGCAGTCATTGAAAGGAAGGAGAAGGAGAAAAAGGAGAAGCGGGCTCTAGGGAACTGGAAGTTGCTGGCCAAAGGTCTGCTCATCAGGGAGAGGCTGAAGCGTCGCTACGGGCCCAAGAGTGAGGCAGCAGCTCCCCACACAGATGCAGGAGGTGGACTCTCTTCTGATGAAGAGGAGGGGACCAGCTCTCAAGCAGAAGCGGCCAGGATACTGGCTGCCTCCTGGCCTCAAAACCGAGAAGATGAAGAAAAGCAGAAGCTGAAGGGTGGGCCCAAGAAGACCAAAAGGGAAAAGAAAGCAGCAGCTTCCCACCTGTTCCCATTTGAGCAGCTGTGA MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACVCQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYAAIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVPFNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREINITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVGLDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTDEKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDASFLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDNDKEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTPAVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRTLEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLYFKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLDSVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETTDCPVPPKRMRREATRQNRCL*R*ETPKEEPSLQSFTRKEEKRLQSSWGFSRWSSKKESGQGDC*I*KPQGYKG*SPQRWG*PQGLSK*PQEGTPSEERGYHE*RQQ*RRGRK*K*LGRG*RT**ACAG*RERKYSLLSISSACEASGDRD*NARAGEDKRKK*KDKTGV*DISSEGDETFQ*RGP*GHTQGSPSLPASKWLLSK*HLQPARSACYWPVHHPSPLYQSAASRCGHLLPLKPGEVVHWNIYS*CRTFSQ*TR*PADYIGKEICYLLCSR**GIGPYILTDSPGSAALDPAGIVSTANSSEVSNSKGKETFQGKIDCGSRRLLRNFQPSSRKPHQTKDQQRNQTRGNLC*GHLQAKCQREEEQGRQKETEQALLQRGR*GPRRQAGEGNPATSAWPGAAGGLQGVL*RGEWE**GWQRL*F*ALQWRSL*SL**GFRTWPSKAEESPRSSEDKGWVQECLQDPSWEPS*GPKLASGILKLFKQ*KRQENVQRW*EGRKKKHSWYRPVARGVL*AGGKVGMCRLCARCGGPASDLLQVRHQAHDLCGGH*Q*RLGPRCHTEVRPSLDDSDPQVPG*C*VVGRDLETIPEPIYGQGEERRLGVSG*THGPAFAHCHWLI*EPPSVCPEAASPEI*GHLSRDSCHPWVLSWRSGLLQGLCAHSAFQGHVAEESKSGEAWRSTLQDGERLF*PCSESPTC*APAAGRK*PGPVWLLADRGVSAPSGRGREGAPERVWECVPLPAQHDAYWLCPAEPAQSTPRGPQAGHRLCPGHHWL*FPWRLLPSRD*WIHRLRGIQRRAPDCLGK*AGSH*KEGEGEKGEAGSRELEVAGQRSAHQGEAEASLRAQE*GSSSPHRCRRWTLF**RGGDQLSSRSGQDTGCLLASKPRR*RKAEAEGWAQEDQKGKESSSFPPVPI*AAV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE xeroderma pigmentosum, complementation group C 1 skin basal cell, skin squamous cell, melanoma xeroderma pigmentosum (C) epithelial TSG missense, nonsense, frameshift, splice_site 33242 UCHL5::ENSG00000285280 ENSG00000116750.14::ENSG00000285280.2 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UCHL5 ENSG00000116750.14 protein_coding - - chr1:193012250-193060080:- chr1:193051754:- chr1:192981380-193029210:- chr1:193020884:- ENSG00000285280 ENSG00000285280.2 lncRNA - - chr1:192167786-192957713:- chr1:192766194:- chr1:192136916-192926843:- chr1:192735324:- chr1:193050455,chr1:193050457 chr1:192766835,chr1:192766834 NA NA chr1:193019585,chr1:193019587 chr1:192735965,chr1:192735964 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["UCHL5:Oncogene"] 15 24 15 24 ONLY_REF_SPLICE YES_LDAS 0.4128 GT 1.2729 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33243 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2294 TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126838573:+ chr8:127568568-128431295:+ chr8:127850818:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124556405:- chr8:125563025-125740714:- chr8:125568646:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:2.12Mb] 13 6 13 2.92 INCL_NON_REF_SPLICE YES_LDAS 0.1685 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33244 WASHC5::NSMCE2 ENSG00000164961.16::ENSG00000156831.8 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2298 FALSE NA FALSE NA WASHC5 ENSG00000164961.16 protein_coding - - chr8:125024260-125091819:- chr8:125091615:- chr8:126036502-126104061:- chr8:126103857:- NSMCE2 ENSG00000156831.8 protein_coding + + chr8:125091679-125367120:+ chr8:125357219:+ chr8:126103921-126379362:+ chr8:126369461:+ chr8:125091039,chr8:125091034,chr8:125091113,chr8:125091111,chr8:125091107,chr8:125091103,chr8:125091097,chr8:125091096,chr8:125091094,chr8:125091093,chr8:125091090,chr8:125091085,chr8:125091084,chr8:125091082,chr8:125091081,chr8:125091080,chr8:125091077,chr8:125091076,chr8:125091072,chr8:125091071,chr8:125091069,chr8:125091062,chr8:125091059,chr8:125091058,chr8:125091057,chr8:125091055,chr8:125091054,chr8:125091049,chr8:125091048,chr8:125091047,chr8:125091045,chr8:125091044 chr8:125198172,chr8:125198172,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449,chr8:125198449 NA NA chr8:126103281,chr8:126103276,chr8:126103355,chr8:126103353,chr8:126103349,chr8:126103345,chr8:126103339,chr8:126103338,chr8:126103336,chr8:126103335,chr8:126103332,chr8:126103327,chr8:126103326,chr8:126103324,chr8:126103323,chr8:126103322,chr8:126103319,chr8:126103318,chr8:126103314,chr8:126103313,chr8:126103311,chr8:126103304,chr8:126103301,chr8:126103300,chr8:126103299,chr8:126103297,chr8:126103296,chr8:126103291,chr8:126103290,chr8:126103289,chr8:126103287,chr8:126103286 chr8:126210414,chr8:126210414,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691,chr8:126210691 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 0 12 0 ONLY_REF_SPLICE YES_LDAS 0.127 GT 1.7056 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33245 FANCC::PTCH1 ENSG00000158169.14::ENSG00000185920.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2308 FALSE NA FALSE NA FANCC ENSG00000158169.14 protein_coding - - chr9:95099054-95426796:- chr9:95317526:- chr9:97861336-98189078:- chr9:98079808:- PTCH1 ENSG00000185920.19 protein_coding - - chr9:95442980-95517057:- chr9:95479147:- chr9:98205262-98279339:- chr9:98241429:- chr9:95278432,chr9:95278437 chr9:95479554,chr9:95479556 NA NA chr9:98040714,chr9:98040719 chr9:98241836,chr9:98241838 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["FANCC:FoundationOne_panel","FANCC:ArcherDX_panel","FANCC:Oncogene"];["PTCH1:ArcherDX_panel","PTCH1:Oncogene","PTCH1:FoundationOne_panel"];["DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.13Mb] 10 7 10 4.67 ONLY_REF_SPLICE YES_LDAS 0.1552 GT 1.5058 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE Fanconi anemia, complementation group C 1 AML, leukaemia Fanconi anaemia C leukaemia_lymphoma TSG large_deletion, missense, nonsense, frameshift, splice_site TRUE Homolog of Drosophila Patched gene 1 Yes skin basal cell, medulloblastoma skin basal cell, medulloblastoma nevoid basal cell carcinoma syndrome epithelial, mesenchymal TSG missense, nonsense, frameshift, splice_site 33246 KIAA1958::LINGO2 ENSG00000165185.15::ENSG00000174482.11 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2307 FALSE NA FALSE NA KIAA1958 ENSG00000165185.15 protein_coding + + chr9:112486827-112669397:+ chr9:112487118:+ chr9:115249107-115431677:+ chr9:115249398:+ LINGO2 ENSG00000174482.11 protein_coding - - chr9:27937617-29213601:- chr9:28670280:- chr9:27937615-29213599:- chr9:28670278:- chr9:112521209,chr9:112521203 chr9:28675105,chr9:28675111 NA NA chr9:115283489,chr9:115283483 chr9:28675103,chr9:28675109 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:83.82Mb] 10 9 10 9 ONLY_REF_SPLICE YES_LDAS 0.2011 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33247 PCAT1::MTSS1 ENSG00000253438.5::ENSG00000170873.19 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4220 TRUE 1595 PCAT1 ENSG00000253438.5 lncRNA + + chr8:126556323-127419050:+ chr8:126838573:+ chr8:127568568-128431295:+ chr8:127850818:+ MTSS1 ENSG00000170873.19 protein_coding - - chr8:124550784-124728473:- chr8:124555904:- chr8:125563025-125740714:- chr8:125568145:- chr8:126845459,chr8:127275375 chr8:124557153,chr8:124713937 NA NA chr8:127857704,chr8:128287620 chr8:125569394,chr8:125726178 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none INTRACHROMOSOMAL[chr8:2.12Mb] 9 5 9 1.5 INCL_NON_REF_SPLICE YES_LDAS 0.1112 GT 1.7819 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33248 CCS::PACS1 ENSG00000173992.9::ENSG00000175115.13 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2305 FALSE NA FALSE NA CCS ENSG00000173992.9 protein_coding + + chr11:66593153-66606019:+ chr11:66593714:+ chr11:66360624-66373490:+ chr11:66361185:+ PACS1 ENSG00000175115.13 protein_coding + + chr11:66070272-66244744:+ chr11:66227504:+ chr11:65837743-66012215:+ chr11:65994975:+ chr11:66599208,chr11:66599205 chr11:66221761,chr11:66221755 NA NA chr11:66366679,chr11:66366676 chr11:65989232,chr11:65989226 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame HMA|16-71|7.4e-15^DUF6286|18-65|6.6e-06^Sod_Cu-PARTIAL|99-112~|2.7e-47 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.35Mb] 9 17 9 16.38 ONLY_REF_SPLICE YES_LDAS 0.2687 GT 1.7232 AG 1.9086 ENST00000533244.6 1-112 ENST00000320580.9 1294-2892 chr11|+|[0]66593262-66593300[2]|[0]66593642-66593714[0]<==>chr11|+|[0]66227504-66227584[2]|[0]66230548-66230663[1]|[2]66230805-66230940[2]|[0]66232172-66232276[2]|[0]66232960-66233066[1]|[2]66233785-66233939[0]|[1]66234132-66234242[0]|[1]66235301-66235403[1]|[2]66235898-66235940[2]|[0]66238804-66238846[0]|[1]66239142-66239277[1]|[2]66241427-66241653[0]|[1]66242912-66243031[0]|[1]66243165-66243280[2] atggcttcggattcggggaaccaggggaccctctgcacgttggagttcgcggtgcagatgacctgtcagagctgtgtggacgcggtgcgcaaatccctgcaaggggtggcagATGGAATTGGCTGCTCTAGAAAAAATTAAATCTACTTGGATTAAAAACCAAGATGACAGCTTGACTGAAACAGACACTCTGGAAATCACTGACCAGGACATGTTTGGAGATGCCAGCACGAGTCTGGTTGTGCCGGAGAAAGTCAAAACTCCCATGAAGTCCAGTAAAACGGATCTCCAGGGCTCTGCCTCCCCCAGCAAAGTGGAGGGGGTGCACACACCCCGGCAGAAGAGGAGCACGCCCCTGAAGGAGCGGCAGCTCTCCAAGCCCCTAAGTGAGAGGACCAACAGTTCCGACAGCGAGCGCTCCCCAGATCTGGGCCACAGCACGCAGATTCCAAGAAAGGTGGTGTATGACCAGCTCAATCAGATCCTGGTGTCAGATGCAGCCCTCCCAGAAAATGTCATTCTGGTGAACACCACTGACTGGCAGGGCCAGTATGTGGCTGAGCTGCTCCAGGACCAGCGGAAGCCTGTGGTGTGCACCTGCTCCACCGTGGAGGTCCAGGCCGTGCTGTCCGCCCTGCTCACCCGGATCCAGCGCTACTGCAACTGCAACTCTTCCATGCCGAGGCCAGTGAAGGTGGCTGCTGTGGGAGGCCAGAGCTACCTGAGCTCCATCCTCAGGTTCTTTGTCAAGTCCCTGGCCAACAAGACCTCCGACTGGCTTGGCTACATGCGCTTCCTCATCATCCCCCTCGGTTCTCACCCTGTGGCCAAATACTTGGGGTCAGTCGACAGTAAATACAGTAGTTCCTTCCTGGATTCTGGTTGGAGAGATCTGTTCAGTCGCTCGGAGCCACCAGTGTCAGAGCAACTGGACGTGGCAGGGCGGGTGATGCAGTACGTCAACGGGGCAGCCACGACACACCAGCTTCCCGTGGCCGAAGCCATGCTGACTTGCCGGCATAAGTTCCCTGATGAAGACTCCTATCAGAAGTTTATTCCCTTCATTGGCGTGGTGAAGGTGGGTCTGGTTGAAGACTCTCCCTCCACAGCAGGCGATGGGGACGATTCTCCTGTGGTCAGCCTTACTGTGCCCTCCACATCACCACCCTCCAGCTCGGGCCTGAGCCGAGACGCCACGGCCACCCCTCCCTCCTCCCCATCTATGAGCAGCGCCCTGGCCATCGTGGGGAGCCCTAATAGCCCATATGGGGACGTGATTGGCCTCCAGGTGGACTACTGGCTGGGCCACCCCGGGGAGCGGAGGAGGGAAGGCGACAAGAGGGACGCCAGCTCGAAGAACACCCTCAAGAGTGTCTTCCGCTCAGTGCAGGTGTCCCGCCTGCCCCATAGTGGGGAGGCCCAGCTTTCTGGCACCATGGCCATGACTGTGGTCACCAAAGAAAAGAACAAGAAAGTTCCCACCATCTTCCTGAGCAAGAAACCCCGAGAAAAGGAGGTGGATTCTAAGAGCCAGGTCATTGAAGGCATCAGCCGCCTCATCTGCTCAGCCAAGCAGCAGCAGACTATGCTGAGAGTGTCCATCGATGGGGTCGAGTGGAGTGACATCAAGTTCTTCCAGCTGGCAGCCCAGTGGCCCACCCATGTCAAGCACTTTCCAGTGGGACTCTTCAGTGGCAGCAAGGCCACCTGA MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVADGIGCSRKN*IYLD*KPR*QLD*NRHSGNH*PGHVWRCQHESGCAGESQNSHEVQ*NGSPGLCLPQQSGGGAHTPAEEEHAPEGAAALQAPK*EDQQFRQRALPRSGPQHADSKKGGV*PAQSDPGVRCSPPRKCHSGEHH*LAGPVCG*AAPGPAEACGVHLLHRGGPGRAVRPAHPDPALLQLQLFHAEASEGGCCGRPELPELHPQVLCQVPGQQDLRLAWLHALPHHPPRFSPCGQILGVSRQ*IQ*FLPGFWLERSVQSLGATSVRATGRGRAGDAVRQRGSHDTPASRGRSHADLPA*VP**RLLSEVYSLHWRGEGGSG*RLSLHSRRWGRFSCGQPYCALHITTLQLGPEPRRHGHPSLLPIYEQRPGHRGEP**PIWGRDWPPGGLLAGPPRGAEEGRRQEGRQLEEHPQECLPLSAGVPPAP*WGGPAFWHHGHDCGHQRKEQESSHHLPEQETPRKGGGF*EPGH*RHQPPHLLSQAAADYAESVHRWGRVE*HQVLPAGSPVAHPCQALSSGTLQWQQGHL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33249 SMYD3::ENSG00000232347 ENSG00000185420.19::ENSG00000232347.1 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SMYD3 ENSG00000185420.19 protein_coding - - chr1:245749342-246507312:- chr1:246327201:- chr1:245912644-246670614:- chr1:246490503:- ENSG00000232347 ENSG00000232347.1 lncRNA - - chr1:247210691-247241823:- chr1:247212392:- chr1:247373993-247405125:- chr1:247375694:- chr1:246302602,chr1:246302604 chr1:247234477,chr1:247234479 NA NA chr1:246465904,chr1:246465906 chr1:247397779,chr1:247397781 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SMYD3:Oncogene"] 7 4 7 4 ONLY_REF_SPLICE YES_LDAS 0.1164 GT 1.9219 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33250 SLC39A8::ENSG00000248161 ENSG00000138821.14::ENSG00000248161.5 HGC27 SRR8616131 SRR8639199 STOMACH carcinoma (undifferentiated_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLC39A8 ENSG00000138821.14 protein_coding - - chr4:102251080-102431258:- chr4:102304317:- chr4:103172237-103352415:- chr4:103225474:- ENSG00000248161 ENSG00000248161.5 lncRNA - - chr4:102418602-102450010:- chr4:102418988:- chr4:103339759-103371167:- chr4:103340145:- chr4:102275373 chr4:102419729 NA NA chr4:103196530 chr4:103340886 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 7 6 7 5.92 ONLY_REF_SPLICE YES_LDAS 0.1368 GT 1.9656 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33261 CCT6A::ZNF713 ENSG00000146731.11::ENSG00000178665.16 COLO201 SRR8616145 SRR8639227 LARGE_INTESTINE carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CCT6A ENSG00000146731.11 protein_coding + + chr7:56051685-56063989:+ chr7:56059640:+ chr7:56119378-56131682:+ chr7:56127333:+ ZNF713 ENSG00000178665.16 protein_coding + + chr7:55887456-55942530:+ chr7:55906253:+ chr7:55955149-56010223:+ chr7:55973946:+ chr7:56059692,chr7:56059767,chr7:56059764 chr7:55893756,chr7:55893756,chr7:55893752 NA NA chr7:56127385,chr7:56127460,chr7:56127457 chr7:55961449,chr7:55961449,chr7:55961445 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.11Mb] 15 7 15 7 ONLY_REF_SPLICE YES_LDAS 0.2143 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33266 FSTL4::ZNF608 ENSG00000053108.18::ENSG00000168916.16 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2315 FALSE NA FALSE NA FSTL4 ENSG00000053108.18 protein_coding - - chr5:133196455-133612541:- chr5:133567186:- chr5:132532147-132948232:- chr5:132902877:- ZNF608 ENSG00000168916.16 protein_coding - - chr5:124636913-124748807:- chr5:124701269:- chr5:123972606-124084500:- chr5:124036962:- chr5:133513952 chr5:124709643 NA NA chr5:132849643 chr5:124045336 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame CFAI_KAZAL|14-34|0.21^Kazal_2|17-23|0.95^CFAI_KAZAL|70-75|1.6^Kazal_2|91-135|2.5e-13^Kazal_1|94-127|8.4e-09^CFAI_KAZAL|100-122|1e-05 none ["ZNF608:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:8.45Mb] 58 28 58 28 ONLY_REF_SPLICE YES_LDAS 0.8963 GT 1.6402 AG 1.7819 ENST00000510685.1 1-166 ENST00000513986.2 907-4539 chr5|-|[0]133567186-133567219[0]|[2]133583265-133583396[0]<==>chr5|-|[2]124637900-124637906[2]|[1]124639133-124639214[1]|[0]124641252-124641405[0]|[2]124643511-124643683[1]|[0]124644244-124644661[0]|[2]124646679-124649133[2]|[1]124649610-124649697[1]|[0]124701014-124701269[0] atgaacccggtacctcagatggaaatgcagaaatcacccgtcttctgcgtcgctcacgctgggagctgtagaccggagctgttcctattcggccatcttggctcctcctggggccttgatcttaaggaggaggagcccagaagctttgaagtcacaagaagagaagGTTGACCCCCTGTTTACAGTGCCAGCGCCACCACCGCCGATTTCCAGCAGTCTCACGCCTCAGATTCTACCCTCCTACTTTTCCCCATCTTCATCCAATATTGCAGCACCGGTTGAACAGCTTTTGGTTCGGACTCGTTCTGTGGGTGTCAATACATGTGAAGTTGGAGTAGTGACAGAGCCAGAGTGTCTTGGGCCCTGTGAACCTGGGACCAGTGTGAATTTGGAAGGGATCGTGTGGCATGAAACAGAAGAAGGTGTCCTAGTGGTCAATGTCACGTGGAGGAACAAAACGTACGTGGGAACCCTACTGGACTGCACCAAGCACGACTGGGCCCCTCCCAGGTTTTGTGAGTCACCGACAAGTGACCTGGAGATGAGAGGGGGCCGGGGCAGAGGGAAGAGAGCGAGGTCTGCTGCTGCTGCCCCGGGCTCCGAGGCCAGCTTCACAGAGTCCAGAGGGCTGCAGAATAAGAACAGAGGGGGGGCCAATGGGAAAGGGAGGCGGGGCAGCCTCAATGCCAGCGGACGAAGGACACCCCCAAATTGTGCTGCTGAGGATATCAAAGCCAGCCCTTCCTCCACCAACAAAAGGAAAAACAAGCCTCCAATGGAGCTGGACCTGAACTCCAGCTCTGAGGACAATAAGCCTGGAAAGCGTGTCCGCACAAATTCCAGAAGCACTCCCACTACCCCTCAAGGGAAACCAGAGACTACTTTTTTGGACCAAGGCTGCTCTTCTCCAGTGTTAATCGACTGTCCCCACCCAAACTGCAACAAAAAGTACAAGCACATTAACGGCCTGAGGTACCACCAGGCTCATGCACACTTAGACCCAGAAAACAAGCTGGAGTTCGAGCCTGACAGTGAGGACAAGATCTCGGACTGTGAGGAAGGATTGAGTAATGTGGCACTTGAATGCAGTGAGCCAAGCACAAGTGTATCTGCTTATGACCAGTTGAAGGCACCGGCATCCCCTGGTGCTGGAAACCCACCTGGGACCCCAAAGGGAAAGAGAGAGCTGATGAGCAATGGCCCAGGTTCCATTATTGGTGCTAAAGCTGGGAAGAATTCTGGCAAAAAGAAGGGCCTTAACAATGAACTGAACAACCTTCCAGTAATCTCCAACATGACGGCTGCGTTAGACAGTTGCTCGGCAGCAGACGGCAGTTTGGCTGCTGAGATGCCTAAACTGGAAGCAGAAGGATTAATTGACAAGAAAAATTTAGGAGATAAAGAAAAGGGCAAAAAAGCTACCAACTGCAAAACGGACAAAAACCTCTCTAAACTGAAAAGTGCCCGGCCCATTGCCCCTGCCCCAGCCCCCACTCCCCCGCAGCTAATCGCTATACCCACTGCAACCTTTACAACGACCACCACTGGGACAATACCCGGACTGCCCTCCCTCACAACAACTGTTGTTCAGGCTACACCAAAGAGTCCTCCGTTAAAACCCATTCAACCAAAGCCCACAATTATGGGAGAGCCCATCACCGTGAACCCAGCTCTGGTGTCACTCAAAGACAAAAAGAAAAAGGAGAAGCGAAAGCTAAAGGACAAAGAAGGGAAAGAGACGGGAAGCCCAAAAATGGATGCCAAGCTGGGGAAACTAGAGGACTCCAAGGGGGCCAGCAAAGATTTACCTGGGCATTTTTTAAAGGATCATCTCAACAAGAATGAAGGGCTGGCAAATGGACTGTCGGAGTCTCAGGAGAGCCGCATGGCCAGTATCAAAGCTGAGGCCGATAAGGTTTACACTTTCACAGACAACGCTCCCAGCCCTTCCATAGGGAGCGCCTCGAGGCTGGAATGCAGCACTTTGGTGAACGGGCAGGCACCAATGGCACCTCTGCATGTGTTGACCCAGAATGGGGCAGAGAGTTCAGCTGCAAAGACAAGCAGCCCGGCCTATTCAGACATATCTGATGCTGCTGACGATGGTGGTTCTGACAGCAGGTCGGAGGGTATGAGATCAAAGGCCAGTTCCCCATCAGATATTATTTCTAGTAAGGACAGTGTTGTAAAAGGGCATTCTTCAACTACAGCACAATCATCTCAACTGAAAGAGTCCCATTCTCCCTATTACCACAGCTATGATCCTTATTATTCTCCAAGTTACATGCACCCTGGGCAGGTCGGTGCCCCTGCAGCTGGAAATAGTGGGAGCACGCAGGGAATGAAGATCAAGAAGGAGTCTGAGGAAGATGCTGAAAAGAAAGACAAGGCAGAGCAGTTAGATTCTAAGAAAGTGGACCACAATTCTGCATCCTTACAGCCTCAGCACCAGTCGGTGATCACACAAAGACATCCTGCCCTGGCTCAGTCACTTTATTATGGCCAGTATGCATATGGGCTCTATATGGACCAGAAGTCTCTGATGGCCACCAGCCCTGCCTATAGACAGCAGTATGAGAAGTACTATGAGGACCAGAGGCTGGCAGAGCAGAAAATGGCCCAGACTGGGAGAGGAGACTGTGAAAGGAAAAGTGAGCTCCCCTTGAAAGAGCTGGGCAAGGAGGAAACTAAACAGAAAAATATGCCATCGGCCACAATCTCAAAAGCTCCCTCTACTCCGGAGCCTAACAAAAACCATTCTAAACTAGGGCCATCAGTGCCTAATAAAACTGAGGAGACAGGTAAATCGCAGCTTCTCTCCAATCACCAGCAGCAGCTTCAGGCCGACAGCTTCAAAGCTAAGCAGATGGAAAACCACCAGCTTATTAAGGAGGCTGTAGAAATGAAGTCTGTCATGGACTCTATGAAGCAGACAGGTGTAGACCCAACCTCGAGATTTAAACAAGACCCAGATTCAAGAACATGGCATCATTATGTATACCAGCCCAAATATCTGGATCAGCAAAAGTCAGAAGAACTTGATAGAGAGAAGAAATTAAAAGAGGATAGTCCGAGGAAAACTCCTAATAAAGAGAGTGGTGTGCCCAGCCTTCCTGTATCGTTAACAAGCATTAAAGAGGAGCCCAAAGAGGCCAAGCATCCTGATTCTCAATCAATGGAGGAGAGCAAGCTGAAAAATGATGATCGAAAGACTCCTGTGAACTGGAAGGACTCTCGGGGAACAAGAGTGGCTGTCTCCTCACCCATGAGTCAGCATCAGTCATACATACAGTACTTGCATGCTTATCCTTACCCACAGATGTACGACCCCAGCCATCCTGCATACCGGGCTGTTTCTCCCGTCCTAATGCACAGTTATCCTGGGGCATATCTCTCTCCAGGATTTCATTATCCTGTTTATGGGAAGATGTCAGGGAGAGAAGAGACAGAGAAAGTCAATACCAGCCCTAGCGTCAACACGAAAACAACCACTGAATCTAAAGCACTGGATTTGCTCCAGCAGCATGCTAACCAATACCGCAGCAAGTCTCCTGCTCCTGTGGAAAAGGCTACAGCTGAGCGGGAACGGGAGGCAGAAAGGGAAAGGGATCGCCACTCCCCCTTCGGCCAGCGGCACCTGCACACGCACCACCACACCCACGTTGGCATGGGTTACCCGCTAATCCCGGGTCAATATGACCCTTTTCAAGGCTTGACCTCTGCTGCCCTTGTTGCCTCTCAGCAGGTGGCTGCCCAGGCATCTGCATCTGGAATGTTTCCTGGACAAAGAAGAGAATAA MNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSSWGLDLKEEEPRSFEVTRREG*PPVYSASATTADFQQSHASDSTLLLFPIFIQYCSTG*TAFGSDSFCGCQYM*SWSSDRARVSWAL*TWDQCEFGRDRVA*NRRRCPSGQCHVEEQNVRGNPTGLHQARLGPSQVL*VTDK*PGDERGPGQREESEVCCCCPGLRGQLHRVQRAAE*EQRGGQWEREAGQPQCQRTKDTPKLCC*GYQSQPFLHQQKEKQASNGAGPELQL*GQ*AWKACPHKFQKHSHYPSRETRDYFFGPRLLFSSVNRLSPPKLQQKVQAH*RPEVPPGSCTLRPRKQAGVRA*Q*GQDLGL*GRIE*CGT*MQ*AKHKCICL*PVEGTGIPWCWKPTWDPKGKERADEQWPRFHYWC*SWEEFWQKEGP*Q*TEQPSSNLQHDGCVRQLLGSRRQFGC*DA*TGSRRIN*QEKFRR*RKGQKSYQLQNGQKPL*TEKCPAHCPCPSPHSPAANRYTHCNLYNDHHWDNTRTALPHNNCCSGYTKESSVKTHSTKAHNYGRAHHREPSSGVTQRQKEKGEAKAKGQRRERDGKPKNGCQAGETRGLQGGQQRFTWAFFKGSSQQE*RAGKWTVGVSGEPHGQYQS*GR*GLHFHRQRSQPFHRERLEAGMQHFGERAGTNGTSACVDPEWGREFSCKDKQPGLFRHI*CC*RWWF*QQVGGYEIKGQFPIRYYF**GQCCKRAFFNYSTIISTERVPFSLLPQL*SLLFSKLHAPWAGRCPCSWK*WEHAGNEDQEGV*GRC*KERQGRAVRF*ESGPQFCILTASAPVGDHTKTSCPGSVTLLWPVCIWALYGPEVSDGHQPCL*TAV*EVL*GPEAGRAENGPDWERRL*KEK*APLERAGQGGN*TEKYAIGHNLKSSLYSGA*QKPF*TRAISA**N*GDR*IAASLQSPAAASGRQLQS*ADGKPPAY*GGCRNEVCHGLYEADRCRPNLEI*TRPRFKNMASLCIPAQISGSAKVRRT**REEIKRG*SEENS**REWCAQPSCIVNKH*RGAQRGQAS*FSINGGEQAEK**SKDSCELEGLSGNKSGCLLTHESASVIHTVLACLSLPTDVRPQPSCIPGCFSRPNAQLSWGISLSRISLSCLWEDVRERRDRESQYQP*RQHENNH*I*STGFAPAAC*PIPQQVSCSCGKGYS*AGTGGRKGKGSPLPLRPAAPAHAPPHPRWHGLPANPGSI*PFSRLDLCCPCCLSAGGCPGICIWNVSWTKKRI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33271 ASB3::MYCNUT ENSG00000115239.24::ENSG00000223850.1 NCIH69 SRR8616152 SRR8670701 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2319 FALSE NA FALSE NA ASB3 ENSG00000115239.24 protein_coding - - chr2:53532672-53860160:- chr2:53714384:- chr2:53759810-54087297:- chr2:53941521:- MYCNUT ENSG00000223850.1 lncRNA + + chr2:15920399-15936017:+ chr2:15935774:+ chr2:16060521-16076139:+ chr2:16075896:+ chr2:53706577,chr2:53707397,chr2:53686848,chr2:53686824,chr2:53686775,chr2:53706623,chr2:53616414,chr2:53598297,chr2:53598301,chr2:53599978,chr2:53600140,chr2:53606572,chr2:53617513 chr2:15922560,chr2:15924294,chr2:15922564,chr2:15922588,chr2:15922627,chr2:15923103,chr2:15928194,chr2:15933426,chr2:15932655,chr2:15934921,chr2:15934918,chr2:15927213,chr2:15928341 NA NA chr2:53933714,chr2:53934534,chr2:53913985,chr2:53913961,chr2:53913912,chr2:53933760,chr2:53843551,chr2:53825434,chr2:53825438,chr2:53827115,chr2:53827277,chr2:53833709,chr2:53844650 chr2:16062682,chr2:16064416,chr2:16062686,chr2:16062710,chr2:16062749,chr2:16063225,chr2:16068316,chr2:16073548,chr2:16072777,chr2:16075043,chr2:16075040,chr2:16067335,chr2:16068463 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 17 12 17 12 ONLY_REF_SPLICE YES_LDAS 0.3023 GT 1.9656 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-3682 chr2:53849122-53849205:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33283 PLXNB2::ENSG00000289960 ENSG00000196576.16::ENSG00000289960.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4263 TRUE 1615 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50276629:- chr22:50713408-50746075:- chr22:50715058:- ENSG00000289960 ENSG00000289960.1 lncRNA + + chr22:19854972-19867419:+ chr22:19866807:+ chr22:19842495-19854942:+ chr22:19854330:+ chr22:50276305 chr22:19860121 NA NA chr22:50714734 chr22:19847644 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 211 145 211 83.82 ONLY_REF_SPLICE YES_LDAS 3.5778 GT 1.9656 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33284 PXMP4::RBM39 ENSG00000101417.12::ENSG00000131051.24 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2321 FALSE NA FALSE NA PXMP4 ENSG00000101417.12 protein_coding - - chr20:33702758-33720319:- chr20:33720095:- chr20:32290564-32308125:- chr20:32307901:- RBM39 ENSG00000131051.24 protein_coding - - chr20:35701347-35742312:- chr20:35732135:- chr20:34289269-34330234:- chr20:34320057:- chr20:33718778,chr20:33718786,chr20:33718908 chr20:35733855,chr20:35733860,chr20:35733595 NA NA chr20:32306584,chr20:32306592,chr20:32306714 chr20:34321777,chr20:34321782,chr20:34321517 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none IHO1-PARTIAL|~102-130|0.0003^RRM_occluded|153-204|0.083^RRM_1|155-219|2.6e-14^RRM_5|169-245|0.019^RRM_7|187-208|1^DUF1866|194-226|0.46^RRM_7|251-309|0.00014^RRM_1|252-321|5.4e-27^RRM_5|258-324|0.00074^RRM_occluded|260-328|8.1e-06^DUF1866|295-323|0.1^RRM_occluded|328-357|2^RBM39linker|341-442|7.4e-30^DUF1866|431-465|0.0077^RRM_1|450-501|8.3e-05^RRM_occluded|454-502|0.82 ["RBM39:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.98Mb] 136 55 136 55 ONLY_REF_SPLICE YES_LDAS 2.318 GT 1.7968 AG 1.1589 ENST00000344022.7 1-113 ENST00000253363.11 102-1593 chr20|-|[1]33720095-33720207[0]<==>chr20|-|[2]35704481-35704581[1]|[0]35704668-35704746[0]|[2]35705225-35705330[2]|[1]35707120-35707201[1]|[0]35709224-35709274[1]|[0]35713019-35713096[1]|[0]35714185-35714389[0]|[2]35716740-35716805[0]|[2]35721740-35721877[0]|[2]35724570-35724722[0]|[2]35725038-35725155[2]|[1]35729312-35729365[2]|[1]35729462-35729527[2]|[1]35731941-35732135[2] atggcagccccgccgcagctaagggctctgctcgtagtcgtcaacgcactgctgcgcaagcgccgctaccacgctgcgttggccgtgcttaagggcttccggaacggggctgtGAGGAAAAAAAGCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAAAGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCGAGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGATTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGCCCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGCGGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTTCTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCAATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGCTGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCAACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGACAGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGAACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGAGTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAGTTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGGCTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTGAAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTTAACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACATGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTGCTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTACCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATGA MAAPPQLRALLVVVNALLRKRRYHAALAVLKGFRNGAVRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33285 PLXNB2::ENSG00000289960 ENSG00000196576.16::ENSG00000289960.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4263 TRUE 1615 PLXNB2 ENSG00000196576.16 protein_coding - - chr22:50274979-50307646:- chr22:50276629:- chr22:50713408-50746075:- chr22:50715058:- ENSG00000289960 ENSG00000289960.1 lncRNA + + chr22:19854972-19867419:+ chr22:19860212:+ chr22:19842495-19854942:+ chr22:19847735:+ chr22:50276305 chr22:19860121 NA NA chr22:50714734 chr22:19847644 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 100 199 100 115.18 INCL_NON_REF_SPLICE YES_LDAS 2.6114 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33286 ASCC1::MICU1 ENSG00000138303.19::ENSG00000107745.20 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2322 FALSE NA FALSE NA ASCC1 ENSG00000138303.19 protein_coding - - chr10:72096032-72217134:- chr10:72196811:- chr10:73855790-73976892:- chr10:73956569:- MICU1 ENSG00000107745.20 protein_coding - - chr10:72367340-72626131:- chr10:72423371:- chr10:74127098-74385889:- chr10:74183129:- chr10:72187166,chr10:72187744,chr10:72187744,chr10:72187744 chr10:72429399,chr10:72429444,chr10:72429420,chr10:72429443 NA NA chr10:73946924,chr10:73947502,chr10:73947502,chr10:73947502 chr10:74189157,chr10:74189202,chr10:74189178,chr10:74189201 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame KH_1|99-148|2.2e-11^TraC_F_IV|155-183|0.54^AKAP7_NLS|161-350|1.8e-56^DUF2299|185-240|2.2e-05^HVSL|193-315|3.6e-06^TraC_F_IV|265-319|8e-05 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","GUO2018CR_TCGA","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr10:0.15Mb] 92 51 92 51 ONLY_REF_SPLICE YES_LDAS 1.7354 GT 1.9656 AG 1.9899 ENST00000394915.7 1-573 ENST00000635239.1 946-1443 chr10|-|[2]72196811-72196989[1]|[0]72203427-72203524[2]|[1]72204422-72204505[2]|[1]72210732-72210831[1]|[0]72213187-72213298[0]<==>chr10|-|[2]72368195-72368355[1]|[0]72375783-72375872[1]|[0]72407929-72408037[0]|[2]72423234-72423371[0] atggaagttctgcgtccacagcttataagaattgatggccggaattacaggaagaatccagtccaagaacagacctatcaacatgaagaagatgaagaggacttctatcaaggctccatggagtgtgctgatgagccctgtgatgcctacgaggtggagcagaccccacaaggattccggtctactttgagggcccccagcttgctctataatctcattcacttgaacacatcaaacgactgtgggttccagaagataactttggattgtcagaatatttatacttggaagtccaggcatatagttggaaagagaggggacactaggaagaaaatagaaatggagaccaaaacttctattagcattcctaaacctggacaagacggggaaattgtaatcactggccagcatcgaaatggtgtaatttcagcccgaacacggattgatgttcttttggacacttttcgaagaaagcagcccttcactcacttccttgcctttttcctcaatgaagttgaggttcaggaaggattcctgagattccaggaggaagtactggcgaagtgctccatgTTTGAACGCCATGACCCTGTGGATGGGAGAATTACTGAGAGGCAGTTTGGTGGCATGCTACTTGCCTACAGTGGGGTGCAGTCCAAGAAGCTGACCGCCATGCAGAGGCAGCTCAAGAAGCACTTCAAAGAAGGAAAGGGTCTGACATTTCAGGAGGTGGAGAACTTCTTTACTTTCCTAAAGAACATTAATGATGTGGACACTGCATTGAGTTTTTACCATATGGCTGGAGCATCTCTTGATAAAGTGACCATGCAGCAGGTGGCCAGGACAGTGGCTAAAGTGGAGCTCTCAGACCACGTGTGTGATGTGGTGTTTGCACTCTTTGACTGTGATGGCAATGGCGAACTGAGCAATAAGGAATTTGTTTCCATCATGAAGCAACGGCTGATGAGAGGCCTGGAAAAGCCCAAAGACATGGGTTTCACTCGCCTCATGCAGGCCATGTGGAAATGTGCACAGGAAACTGCCTGGGACTTCGCTTTACCCAAACAGTAA MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYNLIHLNTSNDCGFQKITLDCQNIYTWKSRHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCAQETAWDFALPKQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oral_cavity,Breast,Nasopharynx,Uterus_cervix,Uterus_corpus no_match TRUE Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma BREAST,CERVIX,STOMACH,HEAD_AND_NECK,BREAST,BREAST no_match 73892815,73956569,73956569,73956569,73956569,73956569 FALSE,TRUE,TRUE,TRUE,TRUE,TRUE 74135630,74135630,74135630,74167795,74167795,74183129 FALSE,FALSE,FALSE,FALSE,FALSE,TRUE PARTIALLY,YES,YES,YES,YES,YES In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33289 TRPC4AP::BLCAP ENSG00000100991.12::ENSG00000166619.15 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TRPC4AP ENSG00000100991.12 protein_coding - - chr20:35002404-35092807:- chr20:35035123:- chr20:33590207-33680610:- chr20:33622926:- BLCAP ENSG00000166619.15 protein_coding - - chr20:37492472-37527931:- chr20:37501292:- chr20:36120874-36156333:- chr20:36129694:- chr20:35027967,chr20:35027971 chr20:37501410,chr20:37501411 NA NA chr20:33615770,chr20:33615774 chr20:36129812,chr20:36129813 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BLCAP:Oncogene"];["CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:2.40Mb] 59 18 59 18 INCL_NON_REF_SPLICE YES_LDAS 0.9344 GT 1.7465 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33290 TMEM120B::CFAP251 ENSG00000188735.13::ENSG00000158023.10 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2323 FALSE NA FALSE NA TMEM120B ENSG00000188735.13 protein_coding + + chr12:121712752-121783001:+ chr12:121712964:+ chr12:122150658-122220907:+ chr12:122150870:+ CFAP251 ENSG00000158023.10 protein_coding + + chr12:121918592-122003927:+ chr12:121942534:+ chr12:122356498-122441833:+ chr12:122380440:+ chr12:121717273,chr12:121717272 chr12:121939165,chr12:121939161 NA NA chr12:122155179,chr12:122155178 chr12:122377071,chr12:122377067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Exonuc_VII_L-PARTIAL|3-69~|0.00057^HAUS-augmin3-PARTIAL|4-69~|6.6e-06^TMPIT-PARTIAL|10-69~|5.5e-159^Seryl_tRNA_N-PARTIAL|17-69~|0.00059^Helo_like_N-PARTIAL|18-69~|5.3e-05 none none 58 38 58 38 ONLY_REF_SPLICE YES_LDAS 1.1651 GT 1.9656 AG 1.9086 ENST00000449592.7 1-69 ENST00000288912.9 999-3450 chr12|+|[0]121712896-121712964[2]<==>chr12|+|[2]121942534-121942645[2]|[0]121942895-121942975[2]|[0]121948984-121949061[2]|[0]121951480-121951530[2]|[0]121954120-121954334[1]|[2]121957074-121957268[1]|[2]121958272-121958522[0]|[1]121958943-121959094[2]|[0]121960585-121960758[2]|[0]121961978-121962162[1]|[2]121966955-121967069[2]|[0]121968006-121968169[1]|[2]121975244-121975334[2]|[0]121975542-121975685[2]|[0]121999716-121999944[0]|[1]122001497-122001598[0]|[1]122003652-122003764[2] atgtccgggcagctggagcgttgcgagcgcgaatggcacgagctggagggagaatttcaagaactgcagTATTCCTGTGCACACAATATTTGACAGCTGCCCTGAAGGGAATGGCATCATGGCCATGGCCATGACCCACGACGCCAAGTATCTGGCAACCATCTCAGATGCTGAAGTCCAGAAGGTATGCATCTGGAAGTGGACTTTGGCAGTGGAAACGCCAGCATGCACTCTCGAACTCCCCACAGAGTACGGTGTTCAGAACTACGTTACTTTTAACCCAACAAATAATAAAGAATTGGTGAGCAATAGTAAAACACGGGCAATATATTATGCATGGTATGAAGAGAGGGATACACTGGCTCACAGTGCCCCACTTTTAACTGAAAAAACCTTCAACAAGCTTGTGGGAAAGTTTAGCCAGTCCATCTTTCACTTGAATTTAACACAAATACTCTCAGCCACAATGGAAGGGAAGCTGGTTGTCTGGGACATACACCGCCCACCCTCATCTGCCTCCACCTTTTTGGGCTTTCCCTATATCAAGCCTTGTAAATTGGTTCATTTGCAGAAAGAGGGTATCACGGTACTTACCACAATTGATAGCTACATTGTCACAGGTGACATTAAGGGGAACATTAAGTTCTATGATCACACCCTGTCTATTGTTAACTGGTACAGTCACTTGAAACTGGGCGCCATAAGAACTCTGTCCTTTTCAAAGACCCCAGCAACTCCTCCTACTGAAAAATCAAACTATCCTCCTGACTGCACTTTAAAAGGTGACCTTTTTGTCTTAAGGAATTTTATCATTGGAACATCTGATGCCGCGGTGTACCACTTAACAACAGATGGGACCAAACTTGAGAAGTTATTTGTAGAGCCCAAGGATGCCATTTGTGCCATCTCCTGCCACCCATATCAACCCCTCATTGCCATCGGGAGCATCTGTGGGATGATCAAAGTGTGGAATTATGAAAACAAACAATATCTTTTCAGCAGGGTTTTTGAGAAGGGGCTTGGAGTCCAGAGTCTGACCTACAACCCCGAAGGAGCCCTTCTTGGAGCTGGCTTTACAGAGGGGACAGTTTACATTCTTGATGCAATGTCTTTAGAAAATGAAAGCCCAGAGCCTTTCAAATATTCCAGAACCAGTGTGACTCATATAAGCTTTTCCCATGACTCCCAGTATATGGCAACTGCTGATAGAAGTTTTACTGTGGCTGTTTACATGCTGGTGGTCAGAAATGGACAGAGGGTCTGGGAGTACTTAGCAAGACTTCGCTCTCATCGCAAAAGCATTCGAAGTCTCCTGTTTGGGGTTTACCTGGACAGCAATGAGCCTAGACTGCTGAGCCTTGGGACAGACAGGCTCTTGATAGAGTATGATCTTCTCAGGAGCTACAAAGACCACCTGGAAGTCCTGGACATTCACCACACCGACCAGGGCTGCTATCCCACCTGCATGGTCTGGTACCCACCACTCACCAGGGAACTCTTCCTGCTTATTTGCAACAGTGGCTACAAAGTGAAGCTTTTTAATGCTACTACCAAAATGTGCAGAAAGACGCTTCTGGGGCCAGCTTATGGTTCCCCTATTGAGCAGACACAAGTCCTCCCAGTGAGAAGCATGGCGGAGCTACAGAAACGCTACTTGGTGTTTATTAACAGAGACAAGGTGGGACTTCAGATCTTACCAGTTGACGGCAATCCACATAAGACATCTGCTATTGTTTGCCACCCGAACGGGGTGGCCGGCATGGCCGTTTCCTATGATGGCTGCTACGCCTTCACTGCGGGAGGGCACGATCGCTCGGTGGTGCAGTGGAAAATCACCTTAAGTGTCCTGGAGGCAGCGGTTTCTCTTGGGGGTGAAGACTTGACCCCATTCTATGGTCTGCTGTCTGGTGGCCGGGAAGGAAAATTCTACAGGGAGCTAGAAGACTACTTCTACTATTCTCAGCTCCGCAGTCAAGGCATCGACACAATGGAGACCAGAAAGGTGTCAGAACACATTTGCCTGTCAGAGCTTCCTTTTGTCATGAGAGCAATTGGCTTTTACCCATCTGAAGAGAAGATTGATGATATATTTAACGAAATCAAATTTGGTGAATATGTGGACACTGGAAAGCTAATCGACAAGATCAACTTACCAGATTTCCTAAAAGTGTACCTTAACCACAAGCCACCTTTTGGTAACACCATGAGTGGCATCCACAAGAGCTTTGAGGTGCTCGGTTATACCAACTCCAAAGGGAAAAAGGCCATTCGAAGAGAGGACTTCCTGAGACTGCTCGTTACTAAAGGTGAGCATATGACGGAGGAGGAGATGTTGGATTGCTTTGCTTCACTGTTTGGCCTGAATCCCGAGGGATGGAAATCCGAGCCTGCAACCTGCTCCGTCAAAGGTTCAGAAATTTGCCTTGAAGAAGAACTTCCAGACGAAATCACTGCAGAAATATTCGCGACTGAAATTCTTGGCTTAACCATTTCAGAAGATTCCGGCCAGGATGGTCAGTGA MSGQLERCEREWHELEGEFQELQYSCAHNI*QLP*REWHHGHGHDPRRQVSGNHLRC*SPEGMHLEVDFGSGNASMHSRTPHRVRCSELRYF*PNK**RIGEQ**NTGNILCMV*REGYTGSQCPTFN*KNLQQACGKV*PVHLSLEFNTNTLSHNGREAGCLGHTPPTLICLHLFGLSLYQAL*IGSFAERGYHGTYHN**LHCHR*H*GEH*VL*SHPVYC*LVQSLETGRHKNSVLFKDPSNSSY*KIKLSS*LHFKR*PFCLKEFYHWNI*CRGVPLNNRWDQT*EVICRAQGCHLCHLLPPISTPHCHREHLWDDQSVEL*KQTISFQQGF*EGAWSPESDLQPRRSPSWSWLYRGDSLHS*CNVFRK*KPRAFQIFQNQCDSYKLFP*LPVYGNC**KFYCGCLHAGGQKWTEGLGVLSKTSLSSQKHSKSPVWGLPGQQ*A*TAEPWDRQALDRV*SSQELQRPPGSPGHSPHRPGLLSHLHGLVPTTHQGTLPAYLQQWLQSEAF*CYYQNVQKDASGASLWFPY*ADTSPPSEKHGGATETLLGVY*QRQGGTSDLTS*RQST*DICYCLPPERGGRHGRFL*WLLRLHCGRARSLGGAVENHLKCPGGSGFSWG*RLDPILWSAVWWPGRKILQGARRLLLLFSAPQSRHRHNGDQKGVRTHLPVRASFCHESNWLLPI*RED**YI*RNQIW*ICGHWKANRQDQLTRFPKSVP*PQATFW*HHEWHPQEL*GARLYQLQREKGHSKRGLPETARY*R*AYDGGGDVGLLCFTVWPESRGMEIRACNLLRQRFRNLP*RRTSRRNHCRNIRD*NSWLNHFRRFRPGWSV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33292 ECT2::FNDC3B ENSG00000114346.14::ENSG00000075420.13 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2324 FALSE NA FALSE NA ECT2 ENSG00000114346.14 protein_coding + + chr3:172750682-172821474:+ chr3:172805869:+ chr3:172468472-172539264:+ chr3:172523659:+ FNDC3B ENSG00000075420.13 protein_coding + + chr3:172039578-172401669:+ chr3:172397164:+ chr3:171757368-172119459:+ chr3:172114954:+ chr3:172806723,chr3:172806817,chr3:172806724,chr3:172806691 chr3:172389661,chr3:172389694,chr3:172389659,chr3:172389718 NA NA chr3:172524513,chr3:172524607,chr3:172524514,chr3:172524481 chr3:172107451,chr3:172107484,chr3:172107449,chr3:172107508 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame TopBP1_BRCT0|55-74|7.4^ECT2_BRCT0|63-83|0.12^ECT2_BRCT0|92-172|1.4e-44^TopBP1_BRCT0|125-172|7.7e-09^BRCT_2|129-164|3.7^RTT107_BRCT_5|177-250|9.1e-06^PTCB-BRCT|179-242|9.1e-23^BRCT|180-245|1.3e-10^BRCT_2|192-249|2.5e-06^BRCT|267-341|2.2e-15^PTCB-BRCT|276-315|5.6e-06^BRCT_2|284-338|0.35^PGBA_C|348-396|1.9e-05^RhoGEF|456-639|1.1e-49^PGBA_C|630-649|3.8^ECT2_PH|667-792|1.6e-49^BRCT|903-914|0.72^PTCB-BRCT|904-914|0.06 none ["ECT2:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.35Mb] 42 20 42 20 ONLY_REF_SPLICE YES_LDAS 0.7524 GT 1.5329 AG 1.7056 ENST00000392692.8 1-2245 ENST00000336824.8 3304-3615 chr3|+|[0]172754531-172754660[0]|[1]172755295-172755374[2]|[0]172755483-172755575[2]|[0]172756983-172757165[2]|[0]172758980-172759069[2]|[0]172760156-172760263[2]|[0]172761610-172761683[1]|[2]172762416-172762546[0]|[1]172762691-172762806[2]|[0]172762910-172762972[2]|[0]172764278-172764500[0]|[1]172769007-172769143[2]|[0]172773903-172774022[2]|[0]172782163-172782231[2]|[0]172783799-172783909[2]|[0]172784707-172784803[0]|[1]172786493-172786574[1]|[2]172802616-172802694[2]|[0]172802861-172802980[2]|[0]172805731-172805869[0]<==>chr3|+|[0]172397164-172397475[2] atggctgaaaatagtgtattaacatccactactgggaggactagcttggcagactcttccatttttgattctaaagttactgagatttccaaggaaaacttacttattggatctacttcatatgtagaagaagagatgcctcagattgaaacaagagtgatattggttcaagaagctggaaaacaagaagaacttataaaagccttaaagactattaaaataatggaagtccctgttataaagataaaagaaagttgtcctggaaaatcggatgaaaaattaataaaaagtgttattaatatggacattaaagtgggctttgtaaagatggagtcagtggaagaatttgaaggtttggattctccggaatttgaaaatgtatttgtagtcacggactttcaggattctgtctttaatgacctctacaaggctgattgtagagttattggaccaccagttgtattaaattgttcacaaaaaggagagcctttgccattttcatgtcgcccgttgtattgtacaagtatgatgaatctagtactatgctttactggatttaggaaaaaagaagaactagtcaggttggtgacattggtccatcacatgggtggagttattcgaaaagactttaattcaaaagttacacatttggtggcaaattgtacacaaggagaaaaattcagggttgctgtgagtctaggtactccaattatgaagccagaatggatttataaagcttgggaaaggcggaatgaacaggatttctatgcagcagttgatgactttagaaatgaatttaaagttcctccatttcaagattgtattttaagtttcctgggattttcagatgaagagaaaaccaatatggaagaaatgactgaaatgcaaggaggtaaatatttaccgcttggagatgaaagatgcactcaccttgtagttgaagagaatatagtaaaagatcttccctttgaaccttcaaagaaactttatgttgtcaagcaagagtggttctggggaagcattcaaatggatgcccgagctggagaaactatgtatttatatgaaaaggcaaatactcctgagctcaagaaatcagtgtcaatgctttctctaaatacccctaacagcaatcgcaaacgacgtcgtttaaaagaaacacttgctcagctttcaagagagacagacgtgtcaccatttccaccccgtaagcgcccatcagctgagcattccctttccatagggtcactcctagatatctccaacacaccagagtctagcattaactatggagacaccccaaagtcttgtactaagtcttctaaaagctccactccagttccttcaaagcagtcagcaaggtggcaagttgcaaaagagctttatcaaactgaaagtaattatgttaatatattggcaacaattattcagttatttcaagtaccattggaagaggaaggacaacgtggtggacctatccttgcaccagaggagattaagactatttttggtagcatcccagatatctttgatgtacacactaagataaaggatgatcttgaagaccttatagttaattgggatgagagcaaaagcattggtgacatttttctgaaatattcaaaagatttggtaaaaacctaccctccctttgtaaacttctttgaaatgagcaaggaaacaattattaaatgtgaaaaacagaaaccaagatttcatgcttttctcaagataaaccaagcaaaaccagaatgtggacggcagagccttgttgaacttcttatccgaccagtacagaggttacccagtgttgcattacttttaaatgatcttaagaagcatacagctgatgaaaatccagacaaaagcactttagaaaaagctattggatcactgaaggaagtaatgacgcatattaatgaggataagagaaaaacagaagctcaaaagcaaatttttgatgttgtttatgaagtagatggatgcccagctaatcttttatcttctcaccgaagcttagtacagcgggttgaaacaatttctctaggtgagcacccctgtgacagaggagaacaagtaactctcttcctcttcaatgattgcctagagatagcaagaaaacggcacaaggttattggcacttttaggagtcctcatggccaaacccgacccccagcttctcttaagcatattcacctaatgcctctttctcagattaagaaggtattggacataagagagacagaagGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGACCAACACAGACTACAGGTTCCGCGTATGTGCGTGTCGTCGCTGTTTAGACACCTCTCAGGAGCTAAGCGGAGCCTTCAGCCCCTCTGCGGCTTTTGTATTACAACGAAGTGAGGTCATGCTTACAGGGGACATGGGGAGCTTAGATGATCCCAAAATGAAGAGCATGATGCCTACTGATGAACAGTTTGCAGCCATCATTGTGCTTGGCTTTGCAACTTTGTCCATTTTATTTGCCTTTATATTACAGTACTTCTTAATGAAGTAA MAENSVLTSTTGRTSLADSSIFDSKVTEISKENLLIGSTSYVEEEMPQIETRVILVQEAGKQEELIKALKTIKIMEVPVIKIKESCPGKSDEKLIKSVINMDIKVGFVKMESVEEFEGLDSPEFENVFVVTDFQDSVFNDLYKADCRVIGPPVVLNCSQKGEPLPFSCRPLYCTSMMNLVLCFTGFRKKEELVRLVTLVHHMGGVIRKDFNSKVTHLVANCTQGEKFRVAVSLGTPIMKPEWIYKAWERRNEQDFYAAVDDFRNEFKVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMYLYEKANTPELKKSVSMLSLNTPNSNRKRRRLKETLAQLSRETDVSPFPPRKRPSAEHSLSIGSLLDISNTPESSINYGDTPKSCTKSSKSSTPVPSKQSARWQVAKELYQTESNYVNILATIIQLFQVPLEEEGQRGGPILAPEEIKTIFGSIPDIFDVHTKIKDDLEDLIVNWDESKSIGDIFLKYSKDLVKTYPPFVNFFEMSKETIIKCEKQKPRFHAFLKINQAKPECGRQSLVELLIRPVQRLPSVALLLNDLKKHTADENPDKSTLEKAIGSLKEVMTHINEDKRKTEAQKQIFDVVYEVDGCPANLLSSHRSLVQRVETISLGEHPCDRGEQVTLFLFNDCLEIARKRHKVIGTFRSPHGQTRPPASLKHIHLMPLSQIKKVLDIRETEGVQGRRSHIPNLRPPDQHRLQVPRMCVSSLFRHLSGAKRSLQPLCGFCITTK*GHAYRGHGELR*SQNEEHDAY**TVCSHHCAWLCNFVHFICLYITVLLNEV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33295 PIGU::FER1L4 ENSG00000101464.11::ENSG00000088340.17 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PIGU ENSG00000101464.11 protein_coding - - chr20:34560542-34698790:- chr20:34575104:- chr20:33148346-33286594:- chr20:33162908:- FER1L4 ENSG00000088340.17 transcribed_unitary_pseudogene - - chr20:35558737-35607562:- chr20:35565227:- chr20:34146507-34195484:- chr20:34153143:- chr20:34572669,chr20:34572678 chr20:35568330,chr20:35568336 NA NA chr20:33160473,chr20:33160482 chr20:34156249,chr20:34156255 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.86Mb] 32 16 32 16 ONLY_REF_SPLICE YES_LDAS 0.5825 GT 1.9656 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33300 RALGPS1::ENG ENSG00000136828.19::ENSG00000106991.14 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2328 FALSE NA FALSE NA RALGPS1 ENSG00000136828.19 protein_coding + + chr9:126914774-127223166:+ chr9:126977745:+ chr9:129677053-129985445:+ chr9:129740024:+ ENG ENSG00000106991.14 protein_coding - - chr9:127815013-127854658:- chr9:127829827:- chr9:130577292-130616937:- chr9:130592106:- chr9:126991476,chr9:126991472,chr9:126991387 chr9:127833277,chr9:127833281,chr9:127833539 NA NA chr9:129753755,chr9:129753751,chr9:129753666 chr9:130595556,chr9:130595560,chr9:130595818 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RasGEF-PARTIAL|53-216~|9.8e-58^Med16_bridge|105-183|1.7e-05 TraL|587-625|2.8e-05 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.59Mb] 20 12 20 12 ONLY_REF_SPLICE YES_LDAS 0.3883 GT 1.9086 AG 1.8323 ENST00000424082.6 1-216 ENST00000373203.9 220-1977 chr9|+|[0]126962290-126962346[2]|[0]126965844-126965951[2]|[0]126977695-126977745[2]<==>chr9|-|[2]127815682-127815806[1]|[0]127815943-127816053[1]|[0]127817149-127817203[0]|[2]127818120-127818377[0]|[2]127818716-127818832[0]|[2]127819622-127819660[0]|[2]127819900-127820037[0]|[2]127824304-127824446[1]|[0]127824800-127824974[0]|[2]127825231-127825357[2]|[1]127825695-127825860[1]|[0]127826510-127826672[0]|[2]127829687-127829827[0] atgtacaagaggaatggtctgatggctagcgtgttggtcacctctgccactccacagggcagcagcagctcggactctctggagggccagagctgcgactatgccagcaagagctatgatgccgttgtcttcgatgtcttgaaagtgaccccagaggagtttgctagccagattacattaatggatatacctgtgtttaaagctatccagccggagGGCCCGTCACAGCTGGAGCTGACTCTCCAGGCATCCAAGCAAAATGGCACCTGGCCCCGAGAGGTGCTTCTGGTCCTCAGTGTAAACAGCAGTGTCTTCCTGCATCTCCAGGCCCTGGGAATCCCACTGCACTTGGCCTACAATTCCAGCCTGGTCACCTTCCAAGAGCCCCCGGGGGTCAACACCACAGAGCTGCCATCCTTCCCCAAGACCCAGATCCTTGAGTGGGCAGCTGAGAGGGGCCCCATCACCTCTGCTGCTGAGCTGAATGACCCCCAGAGCATCCTCCTCCGACTGGGCCAAGCCCAGGGGTCACTGTCCTTCTGCATGCTGGAAGCCAGCCAGGACATGGGCCGCACGCTCGAGTGGCGGCCGCGTACTCCAGCCTTGGTCCGGGGCTGCCACTTGGAAGGCGTGGCCGGCCACAAGGAGGCGCACATCCTGAGGGTCCTGCCGGGCCACTCGGCCGGGCCCCGGACGGTGACGGTGAAGGTGGAACTGAGCTGCGCACCCGGGGATCTCGATGCCGTCCTCATCCTGCAGGGTCCCCCCTACGTGTCCTGGCTCATCGACGCCAACCACAACATGCAGATCTGGACCACTGGAGAATACTCCTTCAAGATCTTTCCAGAGAAAAACATTCGTGGCTTCAAGCTCCCAGACACACCTCAAGGCCTCCTGGGGGAGGCCCGGATGCTCAATGCCAGCATTGTGGCATCCTTCGTGGAGCTACCGCTGGCCAGCATTGTCTCACTTCATGCCTCCAGCTGCGGTGGTAGGCTGCAGACCTCACCCGCACCGATCCAGACCACTCCTCCCAAGGACACTTGTAGCCCGGAGCTGCTCATGTCCTTGATCCAGACAAAGTGTGCCGACGACGCCATGACCCTGGTACTAAAGAAAGAGCTTGTTGCGCATTTGAAGTGCACCATCACGGGCCTGACCTTCTGGGACCCCAGCTGTGAGGCAGAGGACAGGGGTGACAAGTTTGTCTTGCGCAGTGCTTACTCCAGCTGTGGCATGCAGGTGTCAGCAAGTATGATCAGCAATGAGGCGGTGGTCAATATCCTGTCGAGCTCATCACCACAGCGGAAAAAGGTGCACTGCCTCAACATGGACAGCCTCTCTTTCCAGCTGGGCCTCTACCTCAGCCCACACTTCCTCCAGGCCTCCAACACCATCGAGCCGGGGCAGCAGAGCTTTGTGCAGGTCAGAGTGTCCCCATCCGTCTCCGAGTTCCTGCTCCAGTTAGACAGCTGCCACCTGGACTTGGGGCCTGAGGGAGGCACCGTGGAACTCATCCAGGGCCGGGCGGCCAAGGGCAACTGTGTGAGCCTGCTGTCCCCAAGCCCCGAGGGTGACCCGCGCTTCAGCTTCCTCCTCCACTTCTACACAGTACCCATACCCAAAACCGGCACCCTCAGCTGCACGGTAGCCCTGCGTCCCAAGACCGGGTCTCAAGACCAGGAAGTCCATAGGACTGTCTTCATGCGCTTGAACATCATCAGCCCTGACCTGTCTGGTTGCACAAGCAAAGGCCTCGTCCTGCCCGCCGTGCTGGGCATCACCTTTGGTGCCTTCCTCATCGGGGCCCTGCTCACTGCTGCACTCTGGTACATCTACTCGCACACGCGTTCCCCCAGCAAGCGGGAGCCCGTGGTGGCGGTGGCTGCCCCGGCCTCCTCGGAGAGCAGCAGCACCAACCACAGCATCGGGAGCACCCAGAGCACCCCCTGCTCCACCAGCAGCATGGCATAG MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVFDVLKVTPEEFASQITLMDIPVFKAIQPEGPSQLELTLQASKQNGTWPREVLLVLSVNSSVFLHLQALGIPLHLAYNSSLVTFQEPPGVNTTELPSFPKTQILEWAAERGPITSAAELNDPQSILLRLGQAQGSLSFCMLEASQDMGRTLEWRPRTPALVRGCHLEGVAGHKEAHILRVLPGHSAGPRTVTVKVELSCAPGDLDAVLILQGPPYVSWLIDANHNMQIWTTGEYSFKIFPEKNIRGFKLPDTPQGLLGEARMLNASIVASFVELPLASIVSLHASSCGGRLQTSPAPIQTTPPKDTCSPELLMSLIQTKCADDAMTLVLKKELVAHLKCTITGLTFWDPSCEAEDRGDKFVLRSAYSSCGMQVSASMISNEAVVNILSSSSPQRKKVHCLNMDSLSFQLGLYLSPHFLQASNTIEPGQQSFVQVRVSPSVSEFLLQLDSCHLDLGPEGGTVELIQGRAAKGNCVSLLSPSPEGDPRFSFLLHFYTVPIPKTGTLSCTVALRPKTGSQDQEVHRTVFMRLNIISPDLSGCTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTRSPSKREPVVAVAAPASSESSSTNHSIGSTQSTPCSTSSMA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33302 FDXR::GARNL3 ENSG00000161513.12::ENSG00000136895.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2331 FALSE NA FALSE NA FDXR ENSG00000161513.12 protein_coding - - chr17:74862497-74873031:- chr17:74872036:- chr17:72858619-72869156:- chr17:72868161:- GARNL3 ENSG00000136895.19 protein_coding + + chr9:127224265-127393660:+ chr9:127311636:+ chr9:129986544-130155939:+ chr9:130073915:+ chr17:74870863,chr17:74870866,chr17:74870931 chr9:127299041,chr9:127299038,chr9:127299072 NA NA chr17:72866988,chr17:72866991,chr17:72867056 chr9:130061320,chr9:130061317,chr9:130061351 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Thi4|62-102|8e-05^Pyr_redox_2|71-226|1.8e-10^HI0933_like|71-103|2.8e-05^FAD_binding_3|71-91|9.1e-05^NAD_binding_8|74-129|3.4e-10^NAD_binding_9|74-104|4e-06 Rap_GAP|198-377|3.7e-68^CNH|476-773|1.5e-59 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr9] 17 6 17 6 ONLY_REF_SPLICE YES_LDAS 0.2791 GT 1.8323 AG 1.9656 ENST00000413947.6 1-270 ENST00000435213.6 154-2976 chr17|-|[2]74872036-74872107[0]|[2]74872198-74872316[1]|[0]74872866-74872944[0]<==>chr9|+|[0]127311636-127311735[0]|[1]127313441-127313559[2]|[0]127318063-127318127[1]|[2]127320715-127320778[2]|[0]127325069-127325095[2]|[0]127332274-127332349[0]|[1]127333023-127333121[0]|[1]127335230-127335333[2]|[0]127336128-127336236[0]|[1]127338116-127338161[1]|[2]127339645-127339751[0]|[1]127342219-127342334[2]|[0]127344235-127344339[2]|[0]127345403-127345477[2]|[0]127348924-127349035[0]|[1]127353846-127353944[0]|[1]127354294-127354410[0]|[1]127355297-127355472[2]|[0]127357219-127357377[2]|[0]127365300-127365366[0]|[1]127383438-127383545[0]|[1]127385027-127385145[2]|[0]127387193-127387331[0]|[1]127388904-127389119[0]|[1]127390641-127390767[1]|[2]127393083-127393254[2] atggcttcgcgctgctggcgctggtggggctggtcggcgtggcctcggacccggctgcctcccgccgggagcaccccgacctttgggggttcagatgaagtaagagaccctgcaaatgccaaagccttgaggaacaagagaaggaggatgcaggtgagggtgaagcttgggaagttccagcttctgttggatattcaggagaagaccccccagatctgtgtggtgggcagtggcccagctggcttctacacggcccaacacctgctaaagAATGCAACTGCCCTGCCTGGTACTTGGCGAAGAACAGACGTGCACTTAGAGAACCCAGAATACCACACCAGATGGTATTTCAAATATTTTTTAGGACAAGTCCATCAGAACTACATTGGAAACGATGCCGAGAAGAGCCCTTTCTTCTTGTCCGTGACCCTTTCTGACCAAAACAATCAACGTGTCCCTCAATACCGTGCAATTCTTTGGAGAAAAACAGGTACCCAGAAAATATGCCTTCCCTACAGTCCCACAAAAACTCTTTCTGTGAAGTCCATCTTAAGTGCCATGAATCTGGACAAATTTGAGAAAGGCCCCAGGGAAATTTTTCATCCTGAAATACAAAAGGACTTGCTGGTTCTTGAAGAACAAGAGGGCTCTGTGAATTTCAAGTTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACTGATGATGAGATGTTCAGCAATGAAATTGGAAGCGAGCCTTTTCAAAAATTTTTAAATCTTCTGGGTGACACAATCACTCTAAAGGGCTGGACGGGCTACCGTGGCGGTCTGGATACCAAAAATGATACCACAGGGATACATTCAGTTTATACTGTGTACCAAGGGCATGAGATCATGTTTCATGTTTCCACCATGTTGCCATATTCCAAAGAGAACAAACAGCAGGTGGAAAGGAAACGCCACATTGGAAACGATATCGTCACCATTGTGTTCCAAGAAGGAGAGGAATCTTCTCCTGCCTTTAAGCCTTCCATGATCCGCTCCCACTTTACACATATTTTTGCCTTAGTGAGATACAATCAACAAAATGACAATTACAGGCTGAAAATATTTTCAGAAGAGAGCGTACCACTCTTTGGCCCTCCCTTGCCAACTCCACCAGTGTTTACAGACCACCAGGAATTCAGGGACTTTTTGCTAGTGAAATTAATTAATGGTGAAAAAGCCACTTTGGAAACCCCAACATTTGCCCAGAAACGTCGGCGTACCCTGGATATGTTGATTAGATCTTTACACCAGGATTTGATGCCAGATTTGCATAAGAACATGCTTAATAGACGATCTTTTAGTGATGTCTTACCAGAGTCACCCAAGTCAGCGCGGAAGAAAGAGGAGGCCCGCCAGGCGGAGTTTGTTAGAATAGGGCAGGCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCCATCAAGCTTGGCAGCTTCAGGGATCTGTAAAAAAGAGCCGTGGGAGCCCCAGTGTTTCTGCAGTAATTTCCCTCATGAAGCCGTGTGTGCAGATCCCTGGGGCCAGGCCTTGCTGGTTTCCACTGATGCTGGCGTCTTGCTAGTGGATGATGACCTTCCATCAGTGCCCGTGTTTGACAGAACTCTGCCAGTGAAGCAAATGCATGTGCTTGAGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAGGAAAAGATGCTCGCCTCTTTGTCTTCAGGCTAAGTGCTCTGCAAAAGGGCCTTGAGGGGAAGCAGGCTGGGAAGAGCAGGTCTGACTGCAGAGAAAACAAGTTGGAGAAAACAAAAGGCTGCCACCTGTATGCTATTAACACTCACCACAGCAGAGAGCTGAGGATTGTGGTTGCAATTCGGAATAAACTGCTTCTGATCACAAGAAAACACAACAAGCCAAGCGGGGTCACCAGCACCTCATTGTTATCTCCCCTGTCTGAGTCACCTGTTGAAGAATTCCAGTACATCAGGGAGATCTGTCTGTCTGACTCTCCCATGGTGATGACCTTAGTGGATGGGCCAGCTGAAGAGAGTGACAATCTCATCTGTGTGGCTTATCGACACCAATTTGATGTGGTGAATGAGAGCACAGGAGAAGCCTTCAGGCTGCACCACGTGGAGGCCAACAGGGTTAATTTTGTTGCAGCTATTGATGTGTACGAAGATGGAGAAGCTGGTTTGCTGTTGTGTTACAACTACAGTTGCATCTATAAAAAGGTTTGCCCCTTTAATGGTGGCTCTTTTTTGGTTCAACCTTCTGCGTCAGATTTCCAGTTCTGTTGGAACCAGGCTCCCTATGCAATTGTCTGTGCTTTCCCGTATCTCCTGGCCTTCACCACCGACTCCATGGAGATCCGCCTGGTGGTGAACGGGAACCTGGTCCACACTGCAGTCGTGCCGCAGCTGCAGCTGGTGGCCTCCAGGTCGGATATATACTTCACAGCAACTGCAGCTGTGAATGAGGTCTCATCTGGAGGCAGCTCCAAGGGGGCCAGTGCCCGAAATTCTCCTCAGACACCCCCGGGCCGAGATACTCCAGTATTTCCTTCTTCCCTGGGGGAAGGTGAAATTCAATCAAAAAATCTGTACAAGATTCCACTTAGAAACCTCGTGGGCAGAAGCATCGAACGACCTCTGAAGTCACCCTTAGTCTCCAAGGTCATCACCCCACCCACTCCCATCAGTGTGGGCCTTGCTGCCATTCCAGTCACGCACTCCTTGTCCCTGTCTCGCATGGAGATCAAAGAAATAGCAAGCAGGACCCGCAGGGAACTACTGGGCCTCTCGGATGAAGGTGGACCCAAGTCAGAAGGAGCGCCAAAGGCCAAATCAAAACCCCGGAAGCGGTTAGAAGAAAGCCAAGGAGGCCCCAAGCCAGGGGCAGTGAGGTCATCTAGCAGTGACAGGATCCCATCAGGCTCCTTGGAAAGTGCTTCTACTTCCGAAGCCAACCCTGAGGGGCACTCAGCCAGCTCTGACCAGGACCCTGTGGCAGACAGAGAGGGCAGCCCGGTCTCCGGCAGCAGCCCCTTCCAGCTCACGGCTTTCTCCGATGAAGACATTATAGACTTGAAGTAA MASRCWRWWGWSAWPRTRLPPAGSTPTFGGSDEVRDPANAKALRNKRRRMQVRVKLGKFQLLLDIQEKTPQICVVGSGPAGFYTAQHLLKNATALPGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQKFLNLLGDTITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDIVTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESVPLFGPPLPTPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSLAASGICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKLEKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQYIREICLSDSPMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRVNFVAAIDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIYFTATAAVNEVSSGGSSKGASARNSPQTPPGRDTPVFPSSLGEGEIQSKNLYKIPLRNLVGRSIERPLKSPLVSKVITPPTPISVGLAAIPVTHSLSLSRMEIKEIASRTRRELLGLSDEGGPKSEGAPKAKSKPRKRLEESQGGPKPGAVRSSSSDRIPSGSLESASTSEANPEGHSASSDQDPVADREGSPVSGSSPFQLTAFSDEDIIDLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33311 ELL::ENSG00000268184 ENSG00000105656.13::ENSG00000268184.1 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ELL ENSG00000105656.13 protein_coding - - chr19:18442663-18522116:- chr19:18521921:- chr19:18553473-18632926:- chr19:18632731:- ENSG00000268184 ENSG00000268184.1 lncRNA - - chr19:21768772-21793860:- chr19:21769127:- chr19:21951574-21976662:- chr19:21951929:- chr19:18475711,chr19:18475713,chr19:18475719 chr19:21793256,chr19:21793255,chr19:21793255 NA NA chr19:18586521,chr19:18586523,chr19:18586529 chr19:21976058,chr19:21976057,chr19:21976057 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ELL:Oncogene"] 8 9 8 6.55 ONLY_REF_SPLICE YES_LDAS 0.1766 GT 1.8062 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ELL gene (11-19 lysine-rich leukemia gene) 1 Yes AL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33314 PCNX1::RAD51B ENSG00000100731.16::ENSG00000182185.19 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2333 FALSE NA FALSE NA PCNX1 ENSG00000100731.16 protein_coding + + chr14:70907405-71115382:+ chr14:70978648:+ chr14:71374122-71582099:+ chr14:71445365:+ RAD51B ENSG00000182185.19 protein_coding + + chr14:67819779-68730218:+ chr14:68594485:+ chr14:68286496-69196935:+ chr14:69061202:+ chr14:70983656,chr14:70983655 chr14:68579721,chr14:68579717 NA NA chr14:71450373,chr14:71450372 chr14:69046438,chr14:69046434 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Asp4|40-49|0.67^Asp4|637-663|0.0023^Asp4|1129-1165|0.011^Pecanex_C|1671-1897|3.8e-124 none ["RAD51B:Oncogene"];["TCGA_StarF2019","CCLE_StarF2019"] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1092 GT 1.8892 AG 1.9086 ENST00000439984.7 1-2311 ENST00000487270.5 1037-1155 chr14|+|[0]70907851-70908003[2]|[0]70946915-70947123[1]|[2]70962226-70962331[2]|[0]70968198-70968243[0]|[1]70969021-70969110[0]|[1]70976942-70978648[0]<==>chr14|+|[1]68594485-68594603[2] atggggtcgcagacgctgcagatcctccgacagggggtgtgggccgcgctcagcgggggctggtactacgacccgcaccaggccaccttcgtgaacgcgctgcacctctacctgtggctctttctgctgggcctgcccttcaccctctacatggcccttccttctaccatgattatagtagcagtttattgtcctgtgatagctgctgttttcattgttctgaagatggtcaactatcgactacacagagcacttgatgctggagaagttgtagataggactgcaaatgagttcacggatcagcgaaccaaagctgaacaaggcaactgttcaaccaggagaaaagacagcaatggaccgagtgatcctggtggagggattgaaatgtctgagttcatccgagaggccacacccccagttggttgcagttccagaaattcttatgccggtctagatccaagcaaccagattggatctggttcctcgcgtcttggaacagcagcaactattaaaggagatacagacactgctaagacttctgatgatatcagtttaagtctgggccaaagttctagtctttgtaaggaaggaagtgaagaacaagatttggcagctgatcggaagctctttcgtcttgtctccaatgactccttcatctctattcagccttccttatcctcttgtggacaggacttgccaagggacttcagtgacaaagtgaacctgccaagtcataaccaccaccaccatgttgatcagtctctgtccagcgcctgtgacacagaagtagcttctcttgtacctttacactcacactcttatagaaaagaccaccggccgcgaggtgtaccacggacttctagctctgctgtggcttttccagacacttcactgaatgattttcccctttatcagcaaagacgtggattagatccagttagtgagttagaatcttccaagcctctttctggatccaaagaatccttggtggaaaattctggtttatctggggaatttcagcttgctggtgacttgaaaatcaatacttctcagccacccacaaaaagtgggaagagcaaacctttgaaagcagagaaaagcatggacagcttgaggagcctgagcacacggagtagtgggtcaacagaaagctactgcagtggaacggaccgggacactaacagtactgtcagcagctataaaagtgagcagaccagctcaactcacatagagagcatcctgtcagagcatgaggagtctcctaaagcaggaacaaaaagtgggaggaagaaagagtgctgtgcaggcccagaggagaagaatagctgtgccagtgacaaaaggactagcagtgaaaagattgctatggaagcgagtaccaacagtggggttcacgaggccaaggaccccaccccctctgatgagatgcacaaccagagaggtctcagcacctctgcatctgaagaagccaataaaaatccccatgcaaatgaatttacttcccaaggggacagaccacctgggaacactgcagaaaacaaagaagagaagagtgataagtcagctgtttctgtggattccaaagtgcgtaaagatgttggtggaaagcaaaaggaaggggatgttcgacctaaatcttctagcgtaatccatcggacagcttctgcccacaagtcaggcaggagacgcacaggaaaaaaacgggctagcagttttgattcaagccggcatagggactatgtttgctttcgaggtgtttctggtaccaagccacacagtgctatattttgtcatgacgaagactctagtgatcagagtgacttgagtagagcatcaagtgttcagtctgctcaccagttcagcagtgatagctcttctagcaccacttctcattcctgtcagtctcctgagggcagatacagtgctctaaagaccaaacacactcataaagaaaggggcacagactctgaacacacacacaaagctcatttggttcctgaaggaaccagcaaaaagcgtgcaacacgacggacttctagcacaaatagtgccaagactcgtgcccgagtgttgagcctggacagtggcacagtagcatgtttgaatgactcaaacaggttaatggcacctgaaagtataaagcccttaaccacttcaaaatcagatcttgaggccaaagagggagaggtgctagatgagctatctttattaggacgggcttcccagttagagacagtcactcgatctaggaatagcttgccaaaccaggttgcatttcctgaaggggaagagcaagatgcagtcagtggagAGACAACATTTTGCTCTGTCACCCAAGCTGAACTGAACTGGGCTCCAGAAATCCTCCCACCTCAGCCTCCTGAGCAGCTAGGACTACAGATGTGCCACCATACCCAGCTAATTTTTTAA MGSQTLQILRQGVWAALSGGWYYDPHQATFVNALHLYLWLFLLGLPFTLYMALPSTMIIVAVYCPVIAAVFIVLKMVNYRLHRALDAGEVVDRTANEFTDQRTKAEQGNCSTRRKDSNGPSDPGGGIEMSEFIREATPPVGCSSRNSYAGLDPSNQIGSGSSRLGTAATIKGDTDTAKTSDDISLSLGQSSSLCKEGSEEQDLAADRKLFRLVSNDSFISIQPSLSSCGQDLPRDFSDKVNLPSHNHHHHVDQSLSSACDTEVASLVPLHSHSYRKDHRPRGVPRTSSSAVAFPDTSLNDFPLYQQRRGLDPVSELESSKPLSGSKESLVENSGLSGEFQLAGDLKINTSQPPTKSGKSKPLKAEKSMDSLRSLSTRSSGSTESYCSGTDRDTNSTVSSYKSEQTSSTHIESILSEHEESPKAGTKSGRKKECCAGPEEKNSCASDKRTSSEKIAMEASTNSGVHEAKDPTPSDEMHNQRGLSTSASEEANKNPHANEFTSQGDRPPGNTAENKEEKSDKSAVSVDSKVRKDVGGKQKEGDVRPKSSSVIHRTASAHKSGRRRTGKKRASSFDSSRHRDYVCFRGVSGTKPHSAIFCHDEDSSDQSDLSRASSVQSAHQFSSDSSSSTTSHSCQSPEGRYSALKTKHTHKERGTDSEHTHKAHLVPEGTSKKRATRRTSSTNSAKTRARVLSLDSGTVACLNDSNRLMAPESIKPLTTSKSDLEAKEGEVLDELSLLGRASQLETVTRSRNSLPNQVAFPEGEEQDAVSGETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Oral_cavity no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog B 1 lipoma, uterine leiomyoma mesenchymal TSG, fusion translocation 33315 ENSG00000288871::MRTFA ENSG00000288871.2::ENSG00000196588.21 OVSAHO SRR8616155 SRR8670728 OVARY carcinoma (adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ENSG00000288871 ENSG00000288871.2 lncRNA + + chr22:50244637-50247014:+ chr22:50245264:+ chr22:50683066-50685443:+ chr22:50683693:+ MRTFA ENSG00000196588.21 protein_coding - - chr22:40410281-40636719:- chr22:40463286:- chr22:40806285-41032723:- chr22:40859290:- chr22:50245592,chr22:50245593 chr22:40488270,chr22:40488269 NA NA chr22:50684021,chr22:50684022 chr22:40884274,chr22:40884273 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 5 4 5 INCL_NON_REF_SPLICE NO_LDAS 0.1092 GT 1.5301 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE megakaryoblastic leukemia (translocation) 1 1 acute megakaryocytic leukaemia leukaemia_lymphoma oncogene, TSG, fusion translocation 33318 PLEKHM1::HMMR ENSG00000225190.12::ENSG00000072571.20 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PLEKHM1 ENSG00000225190.12 protein_coding - - chr17:45435900-45490758:- chr17:45490652:- chr17:43513266-43568124:- chr17:43568018:- HMMR ENSG00000072571.20 protein_coding + + chr5:163460203-163491941:+ chr5:163463856:+ chr5:162887209-162918947:+ chr5:162890862:+ chr17:45483992,chr17:45483999 chr5:163462391,chr5:163462384 NA NA chr17:43561358,chr17:43561365 chr5:162889397,chr5:162889390 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr5] 113 2 112.9 2 ONLY_REF_SPLICE YES_LDAS 1.4682 GT 1.5058 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33319 PPT1::USP35 ENSG00000131238.18::ENSG00000118369.13 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2334 FALSE NA FALSE NA PPT1 ENSG00000131238.18 protein_coding - - chr1:40072710-40097260:- chr1:40089410:- chr1:40538382-40562932:- chr1:40555082:- USP35 ENSG00000118369.13 protein_coding + + chr11:78188812-78215232:+ chr11:78213646:+ chr11:77899858-77926278:+ chr11:77924692:+ chr1:40088680,chr1:40088682 chr11:78213207,chr11:78213205 NA NA chr1:40554352,chr1:40554354 chr11:77924253,chr11:77924251 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Palm_thioest|34-318|7.3e-87 none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr11] 74 43 74 43 ONLY_REF_SPLICE YES_LDAS 1.4949 GT 1.9329 AG 1.2729 ENST00000641471.1 1-623 ENST00000526425.1 2083-2250 chr1|-|[1]40089410-40089512[1]|[0]40091329-40091399[2]|[1]40092045-40092172[0]|[2]40092398-40092507[1]|[0]40093933-40094019[1]|[0]40097115-40097238[0]<==>chr11|+|[0]78213646-78213813[2] atggcgtcgcccggctgcctgtggctcttggctgtggctctcctgccatggacctgcgcttctcgggcgctgcagcatctggacccgccggcgccgctgccgttggtgatctggcatgggatggggtctcgttatgttgcccaaactggtctcgaactcttggcctcaagcaatcctcctgcctcgtcttaccaaagcgctgggatgataggagacagctgttgcaatcccttaagcatgggtgctattaaaaaaatggtggagaagaaaatacctggaatttacgtcttatctttagagattgggaagaccctgatggaggacgtggagaacagcttcttcttgaatgtcaattcccaagtaacaacagtgtgtcaggcacttgctaaggatcctaaattgcagcaaggctacaatgctatgggattctcccagggaggccaatttctgagggcagtggctcagagatgcccttcacctcccatgatcaatctgatctcggttgggggacaacatcaaggtgtttttggactccctcgatgcccaggagagagctctcacatctgtgacttcatccgaaaaacactgaatgctggggcgtactccaaagttgttcaggaacgGAGCAGGAGAAGGAGGCCCGGAGCAGGGCGGCCTACATCTCTGCACTCCCCACATCTCCGCACTGGGGGAGGGGCTTTGATGAAGACAAGGATGAGGATGAAGGCTCTCCAGGGGGCTGCAATCCTGCAGGTGGCAATGGTGGTGACTTCCACAGACTGGTCTTCTAA MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGSRYVAQTGLELLASSNPPASSYQSAGMIGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERSRRRRPGAGRPTSLHSPHLRTGGGALMKTRMRMKALQGAAILQVAMVVTSTDWSS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33320 SBNO1::FAM9B ENSG00000139697.14::ENSG00000177138.17 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123313620:- chr12:123773656-123849394:- chr12:123798167:- FAM9B ENSG00000177138.17 protein_coding - - chrX:9024232-9295682:- chrX:9162904:- chrX:8992273-9263722:- chrX:9130945:- chr12:123311233,chr12:123311245 chrX:9169703,chrX:9169711 NA NA chr12:123795780,chr12:123795792 chrX:9137744,chrX:9137752 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SBNO1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chrX] 60 54 60 54 ONLY_REF_SPLICE YES_LDAS 1.4567 GT 1.5219 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE TRUE hsa-mir-8072 chr12:123364764-123364843:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33322 TXLNA::KPNA6 ENSG00000084652.16::ENSG00000025800.14 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2339 FALSE NA FALSE NA TXLNA ENSG00000084652.16 protein_coding + + chr1:32179675-32198285:+ chr1:32194160:+ chr1:32645276-32663886:+ chr1:32659761:+ KPNA6 ENSG00000025800.14 protein_coding + + chr1:32108056-32176563:+ chr1:32154588:+ chr1:32573657-32642164:+ chr1:32620189:+ chr1:32194660,chr1:32194661 chr1:32144107,chr1:32144105 NA NA chr1:32660261,chr1:32660262 chr1:32609708,chr1:32609706 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FlaC_arch|68-84|1.1^VPS53_C|156-214|1.9e-05^Taxilin|170-477|5.1e-114^Crescentin|178-488|0.025^FlaC_arch|206-223|3.8^HTH_26|237-249|1.5^FlaC_arch|240-257|3.2^FlaC_arch|280-317|0.00038^VPS53_C|289-313|0.74^VPS53_C|311-349|1.7^HTH_26|322-330|2.1^VPS53_C|385-425|0.59^FlaC_arch|393-428|6.2e-05^HTH_26|415-433|2.7^FlaC_arch|456-488|0.013^VPS53_C|459-479|1.4^HTH_26|461-487|7.1e-05 NUSAP|11-52|0.00081^IBB|13-102|6.5e-27^SEN1_N|45-194|0.15^Arm|86-99|1.4^HEAT|86-108|2.1^Arm|113-154|8.2e-10^RICTOR_V|122-160|0.045^Arm_2|124-196|0.00028^V-ATPase_H_C|126-193|0.042^HEAT_2|127-198|3e-08^HEAT_EZ|141-194|1.4e-11^HEAT_PBS|142-176|0.09^HEAT|145-154|2.5^Arm|157-195|3.8e-17^CTNNBL|160-195|0.11^Arm_3|164-187|3.3^NopRA1|164-194|0.13^IBB|165-187|8.5^HEAT|169-195|1.9e-06^HEAT_2|170-276|3.1e-07^HEAT_PBS|183-198|0.0033^RICTOR_V|186-238|0.0012^Arm|200-239|4.6e-13^HEAT_EZ|210-237|0.061^HEAT|211-239|0.26^HEAT_2|212-289|0.00095^HEAT_EZ|228-279|4.1e-06^HEAT_PBS|228-237|0.53^SEN1_N|244-306|0.0023^Arm|245-281|1.2e-10^Arm_2|251-389|0.00033^HEAT|254-280|0.14^NopRA1|254-287|0.0075^V-ATPase_H_C|256-323|7.2e-05^CTNNBL|270-330|7.6e-05^Arm|284-322|5.2e-12^V-ATPase_H_C|294-363|0.00026^SEN1_N|295-390|0.063^HEAT|298-322|0.054^HEAT_2|299-376|1.6e-07^Arm|328-365|1.3e-15^HEAT_EZ|336-363|1.2e-06^HEAT|338-364|7.7e-07^NopRA1|340-389|0.0072^RICTOR_V|354-391|0.038^Arm|367-406|1.6e-12^NopRA1|373-408|0.48^HEAT_2|376-419|0.00025^HEAT_PBS|378-388|9^HEAT|379-404|0.16^HEAT_EZ|393-418|0.0052^RICTOR_V|395-426|3^HEAT_PBS|395-402|2.4^Arm|410-449|1.2e-11^CTNNBL|410-439|0.55^V-ATPase_H_C|422-455|0.091^HEAT|425-449|2.9^Arm_3|464-514|3.6e-26^Arm_2|470-497|6^CTNNBL|482-502|0.27^SEN1_N|485-505|0.029 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.00Mb];LOCAL_REARRANGEMENT:+:[3118] 16 6 16 6 ONLY_REF_SPLICE YES_LDAS 0.2811 GT 1.6402 AG 1.8256 ENST00000373610.8 1-1347 ENST00000373625.8 5-1611 chr1|+|[0]32180346-32180514[0]|[1]32181242-32181577[0]|[1]32184525-32184616[2]|[0]32187954-32188124[2]|[0]32190055-32190249[2]|[0]32192311-32192430[2]|[0]32192657-32192731[2]|[0]32193208-32193300[2]|[0]32194065-32194160[2]<==>chr1|+|[1]32154588-32154721[2]|[0]32156853-32156945[2]|[0]32157346-32157445[0]|[1]32158267-32158361[2]|[0]32159400-32159531[2]|[0]32160615-32160703[1]|[2]32161947-32162046[2]|[0]32162361-32162524[1]|[2]32163235-32163313[2]|[0]32166105-32166230[2]|[0]32167169-32167296[1]|[2]32169882-32170060[0]|[1]32170707-32170894[2] atgaagaaccaagacaaaaagaacggggctgccaaacaatccaatccaaaaagcagcccaggacaaccggaagcaggacccgagggagcccaggagcggcccagccaggcggctcctgcagtagaagcagaaggtcccggcagcagccaggctcctcggaagccggagggggctcaagccagaacggctcagtctggggcccttcgtgatgtctctgaggagctgagccgccaactggaagacatactgagcacatactgtgtggacaataaccaggggggccccggcgaggatggggcacagggtgagccggctgaacccgaagatgcagagaagtcccggacctatgtggcaaggaatggggagcctgaaccaactccagtagtcaatggagagaaggaaccctccaagggggatccaaacacagaagagatccggcagagtgacgaggtcggagaccgagaccatcgaaggccacaggagaagaaaaaagccaagggtttggggaaggagatcacgttgctgatgcagacattgaatactctgagtaccccagaggagaagctggctgctctgtgcaagaagtatgctgaactgctggaggagcaccggaattcacagaagcagatgaagctcctacagaaaaagcagagccagctggtgcaagagaaggaccacctgcgcggtgagcacagcaaggccgtcctggcccgcagcaagcttgagagcctatgccgtgagctgcagcggcacaaccgctccctcaaggaagaaggtgtgcagcgggcccgggaggaggaggagaagcgcaaggaggtgacctcgcacttccaggtgacactgaatgacattcagctgcagatggaacagcacaatgagcgcaactccaagctgcgccaagagaacatggagctggctgagaggctcaagaagctgattgagcagtatgagctgcgcgaggagcatatcgacaaagtcttcaaacacaaggacctacaacagcagctggtggatgccaagctccagcaggcccaggagatgctaaaggaggcagaagagcggcaccagcgggagaaggattttctcctgaaagaggcagtagagtcccagaggatgtgtgagctgatgaagcagcaagagacccacctgaagcaacagcttgccctatacacagagaagtttgaggagttccagaacacactttccaaaagcagcgaggtattcaccacattcaagcaggagatggaaaagatgactaagaagatcaagaagctggagaaagaaaccaccatgtaccggtcccggtgggagagcagcaacaaggccctgcttgagatggctgaggagAGACCATGGCGAGCCCAGGGAAAGACAATTATCGAATGAAGAGCTATAAGAACAATGCTCTAAACCCTGAAGAAATGAGACGAAGAAGAGAGGAAGAGGGCATTCAGCTCCGGAAGCAGAAGCGAGAGCAACAACTTTTTAAACGGAGAAATGTGGAGCTGATTAATGAAGAAGCTGCCATGTTCGATAGTCTTCTCATGGACTCTTATGTGAGCTCTACCACTGGGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGCTCTTTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAATTCCGGAAACTGCTCTCCAAAGAGCCTAGTCCTCCAATAGATGAAGTTATCAACACTCCAAGAGTGGTGGATCGGTTCGTGGAGTTTCTGAAGAGGAATGAGAATTGTACATTACAGTTTGAAGCTGCCTGGGCTCTAACGAATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATTGAAGCAGGGGCTGTCCCCATTTTTATAGAGCTGCTTAATTCAGACTTTGAGGATGTTCAGGAACAGGCAGTCTGGGCACTGGGAAACATAGCTGGAGATAGCTCTGTTTGCCGAGATTACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACACTCCTTACCAAGTCCACACGACTGACGATGACACGGAATGCAGTCTGGGCCCTGTCAAATCTCTGCCGAGGGAAAAACCCACCCCCAGAGTTTGCAAAGGTCTCTCCTTGTTTGCCTGTACTGTCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGATGCTTGCTGGGCCCTTTCTTATCTGTCTGATGGCCCCAATGAGAAGATCCAGGCAGTCATAGACTCCGGAGTCTGCCGGAGATTGGTAGAGCTGCTGATGCACAATGATTACAAAGTGGCTTCTCCTGCCCTGAGAGCCGTGGGTAACATCGTCACTGGGGATGACATCCAGACCCAGGTCATTCTTAACTGTTCAGCCCTACCTTGCCTTCTCCACTTGTTGAGCAGTCCCAAGGAGTCAATCCGGAAGGAAGCTTGCTGGACTATTTCAAATATTACTGCTGGCAACAGGGCTCAAATACAGGCTGTTATAGATGCAAATATCTTCCCTGTGTTGATCGAAATCCTTCAGAAAGCAGAGTTTCGTACAAGGAAAGAGGCAGCCTGGGCCATCACCAATGCCACATCAGGAGGAACCCCTGAGCAGATCAGGTACCTGGTCTCACTGGGCTGCATCAAACCCCTATGTGACTTGCTGACTGTAATGGATTCGAAGATTGTGCAAGTGGCCCTCAATGGACTGGAGAACATCCTGCGGCTTGGAGAGCAAGAGGGCAAGCGCAGTGGCTCAGGGGTCAATCCTTATTGTGGCCTCATAGAGGAAGCCTATGGCTTGGATAAAATTGAGTTTCTCCAGAGCCACGAGAACCAGGAGATCTACCAGAAGGCCTTCGACCTCATTGAGCACTACTTTGGTGTAGAAGACGATGATAGCAGCCTGGCTCCCCAAGTCGATGAAACGCAACAGCAGTTCATCTTCCAGCAGCCTGAGGCCCCCATGGAGGGCTTCCAGCTATAA MKNQDKKNGAAKQSNPKSSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPRKPEGAQARTAQSGALRDVSEELSRQLEDILSTYCVDNNQGGPGEDGAQGEPAEPEDAEKSRTYVARNGEPEPTPVVNGEKEPSKGDPNTEEIRQSDEVGDRDHRRPQEKKKAKGLGKEITLLMQTLNTLSTPEEKLAALCKKYAELLEEHRNSQKQMKLLQKKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQHNERNSKLRQENMELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKDFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTMYRSRWESSNKALLEMAEERPWRAQGKTIIE*RAIRTML*TLKK*DEEERKRAFSSGSRSESNNFLNGEMWS*LMKKLPCSIVFSWTLM*ALPLGRV*SQERWWRCSFLMILTCS*QPHRNSGNCSPKSLVLQ*MKLSTLQEWWIGSWSF*RGMRIVHYSLKLPGL*RILPLEPLSRPKLSLKQGLSPFL*SCLIQTLRMFRNRQSGHWET*LEIALFAEITS*TVPSLILC*HSLPSPHD*R*HGMQSGPCQISAEGKTHPQSLQRSLLVCLYCLAYSSAATRTCWQMLAGPFLICLMAPMRRSRQS*TPESAGDW*SC*CTMITKWLLLP*EPWVTSSLGMTSRPRSFLTVQPYLAFSTC*AVPRSQSGRKLAGLFQILLLATGLKYRLL*MQISSLC*SKSFRKQSFVQGKRQPGPSPMPHQEEPLSRSGTWSHWAASNPYVTC*L*WIRRLCKWPSMDWRTSCGLESKRASAVAQGSILIVAS*RKPMAWIKLSFSRATRTRRSTRRPSTSLSTTLV*KTMIAAWLPKSMKRNSSSSSSSLRPPWRASSY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33323 CNTN1::SBNO1 ENSG00000018236.15::ENSG00000139697.14 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE FALSE TRUE 2338 FALSE NA FALSE NA CNTN1 ENSG00000018236.15 protein_coding + + chr12:40692439-41072415:+ chr12:40959234:+ chr12:41086241-41466217:+ chr12:41353036:+ SBNO1 ENSG00000139697.14 protein_coding - - chr12:123289109-123364847:- chr12:123296050:- chr12:123773656-123849394:- chr12:123780597:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ig_3|50-118|5.8e-13^ig|58-123|8.9e-09^Ig_4|58-115|1.1^I-set|59-125|1.5e-08^Ig_2|60-126|5.2e-07^Ig_5|60-118|0.11^Ig_C17orf99|60-126|0.012^C2-set_2|60-84|6.4^Sp38|73-117|0.45^Receptor_2B4|74-125|0.0097^V-set_CD47|76-120|3.3^V-set|87-127|0.01^Herpes_gE_N|93-114|1.2^Adeno_E3_CR1|96-119|1.5^Ig_6|98-116|0.28^Izumo-Ig|106-115|5.4^C2-set|107-130|0.93^ig|143-217|2e-06^Ig_3|145-214|5.4e-10^Izumo-Ig|145-215|0.0067^Ig_2|146-217|2.1e-06^V-set_CD47|171-215|0.05^I-set|188-215|4.7e-05^V-set|189-218|8.8e-05^Ig_6|189-214|0.32^Ig_5|190-215|0.15^Ig_4|190-214|0.99^Pectate_lyase_5|190-210|6^Sp38|192-220|0.05^Adeno_E3_CR1|192-212|0.17^Herpes_gE_N|192-216|0.44^Ig_3|244-314|4.5e-17^I-set|244-326|9.3e-17^ig|251-319|3e-10^Ig_2|255-318|1.4e-11^V-set|255-278|0.091^Ig_5|255-329|5.8e-05^C2-set_2|256-289|0.00033^Ig_4|259-327|0.0041^Izumo-Ig|276-328|0.0092^Sp38|284-314|2.3^Ig_6|284-318|0.072^Pectate_lyase_5|287-324|1.2^V-set|288-326|2.4e-06^Adeno_E3_CR1|288-325|0.017^C2-set|289-327|0.019^Herpes_gE_N|291-312|0.2^Receptor_2B4|295-319|0.14^V-set_CD47|297-336|0.12^Ig_C17orf99|307-324|1.2^I-set|333-408|5.9e-12^Ig_3|336-395|1.4e-12^Ig_2|339-398|1.7e-08^C2-set_2|352-369|0.0024^ig|356-398|0.0024^Ig_5|361-396|0.018^Ig_4|361-393|0.0087^Ig_6|368-393|0.1^V-set|369-394|0.0011^Herpes_gE_N|371-390|3.9^Adeno_E3_CR1|372-396|0.18^Sp38|373-394|2.5^Pectate_lyase_5|375-398|0.78^C2-set|376-395|0.23^Izumo-Ig|377-394|0.12^Ig_C17orf99|388-407|0.31^Ig_3|415-488|1.9e-14^I-set|417-500|2.4e-16^ig|421-496|1.4e-11^V-set|422-453|0.047^Ig_2|425-496|9.4e-10^Ig_C17orf99|427-501|0.0011^Ig_5|429-490|0.022^C2-set_2|429-455|3.9^Ig_4|430-489|0.00073^Sp38|443-495|0.00025^Receptor_2B4|447-482|0.033^V-set_CD47|449-493|0.12^Izumo-Ig|456-487|0.07^Ig_6|457-491|0.002^Herpes_gE_N|463-502|0.0068^V-set|464-498|1.1e-06^Pectate_lyase_5|468-497|0.13^Adeno_E3_CR1|469-491|0.2^C2-set|473-495|0.44^Ig_3|507-586|2.6e-13^I-set|509-600|4.1e-11^ig|510-596|3.6e-14^Ig_2|510-600|2.2e-09^Adeno_E3_CR1|513-588|0.034^C2-set|518-532|2.7^V-set_CD47|535-586|0.0031^Pectate_lyase_5|543-587|0.0014^Ig_5|552-590|0.023^Sp38|553-598|0.0029^Ig_6|557-587|0.039^V-set|558-598|2.7e-05^Receptor_2B4|564-583|0.5^Herpes_gE_N|564-600|0.13^Ig_4|567-589|1.7^Izumo-Ig|567-592|0.11^Ig_C17orf99|580-600|0.5 none ["SBNO1:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:82.22Mb] 15 2 15 2 ONLY_REF_SPLICE YES_LDAS 0.2173 GT 1.9329 AG 1.8892 ENST00000547849.6 1-1804 ENST00000420886.6 4040-4182 chr12|+|[0]40908433-40908493[0]|[1]40910073-40910105[0]|[1]40918639-40918771[1]|[2]40922256-40922428[0]|[1]40924557-40924652[0]|[1]40929796-40930002[0]|[1]40933461-40933560[1]|[2]40933697-40933878[0]|[1]40936781-40936905[2]|[0]40937570-40937687[0]|[1]40939335-40939485[1]|[2]40943597-40943724[0]|[1]40943995-40944170[2]|[0]40959114-40959234[0]<==>chr12|-|[2]123295908-123296050[1] atgaaaatgtggttgctggtcagtcatcttgtgataatatctattactacctgtttagcagagtttacatggtatagaagatatggtcatggagtttctgaggaagacaaaggatttggaccaatttttgaagagcagccaatcaataccatttatccagaggaatcactggaaggaaaagtctcactcaactgtagggcacgagccagccctttcccggtttacaaatggagaatgaataatggggacgttgatctcacaagtgatcgatacagtatggtaggaggaaaccttgttatcaacaaccctgacaaacagaaagatgctggaatatactactgtttagcatctaataactacgggatggtcagaagcactgaagcaaccctgagctttggatatcttgatcctttcccacctgaggaacgtcctgaggtcagagtaaaagaagggaaaggaatggtgcttctctgtgaccccccataccattttccagatgatcttagctatcgctggcttctaaatgaatttcctgtatttatcacaatggataaacggcgatttgtgtctcagacaaatggcaatctctacattgcaaatgttgaggcttccgacaaaggcaattattcctgctttgtttccagtccttctattacaaagagcgtgttcagcaaattcatcccactcattccaatacctgaacgaacaacaaaaccatatcctgctgatattgtagttcagttcaaggatgtatatgcattgatgggccaaaatgtgaccttagaatgttttgcacttggaaatcctgttccggatatccgatggcggaaggttctagaaccaatgccaagcactgctgagattagcacctctggggctgttcttaagatcttcaatattcagctagaagatgaaggcatctatgaatgtgaggctgagaacattagaggaaaggataaacatcaagcaagaatttatgttcaagcattccctgagtgggtagaacacatcaatgacacagaggtggacataggcagtgatctctactggccttgtgtggccacaggaaagcccatccctacaatccgatggttgaaaaatggatatgcgtatcataaaggggaattaagactgtatgatgtgacttttgaaaatgccggaatgtatcagtgcatagctgaaaacacatatggagccatttatgcaaatgctgagttgaagatcttggcgttggctccaacttttgaaatgaatcctatgaagaaaaagatcctggctgctaaaggtggaagggtgataattgaatgcaaacctaaagctgcaccgaaaccaaagttttcatggagtaaagggacagagtggcttgtcaatagcagcagaatactcatttgggaagatggtagcttggaaatcaacaacattacaaggaatgatggaggtatctatacatgctttgcagaaaataacagagggaaagctaatagcactggaacccttgttatcacagatcctacgcgaattatattggccccaattaatgccgatatcacagttggagaaaacgccaccatgcagtgtgctgcgtcctttgatcctgccttggatctcacatttgtttggtccttcaatggctatgtgatcgattttaacaaagagaatattcactaccagaggaattttatgctggattccaatggggaattactaatccgaaatgcgcagctgaaacatgctggaagatacacatgcactgcccagacaattgtggacaattcttcagcttcagctgaccttgtagtgagagGTTTGATCATTCCGGCAAATTGTGTGTCTCCTCTTGTAAATCTCCTATCAACTTCAGACCAGTCTCAACAGCTTGCGGTCCAACAGAAACAGCTATGGCAACAGCATCACCCTCAGAGCATCACCAACTTGAGCAACGCATGA MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGLIIPANCVSPLVNLLSTSDQSQQLAVQQKQLWQQHHPQSITNLSNA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33337 TMEM38B::FKTN ENSG00000095209.12::ENSG00000106692.15 NCIH650 SRR8616156 SRR8670695 LUNG carcinoma (bronchioloalveolar_adenocarcinoma) metastasis star-fusion TRUE TRUE TRUE 2340 FALSE NA FALSE NA TMEM38B ENSG00000095209.12 protein_coding + + chr9:105694541-105776629:+ chr9:105748190:+ chr9:108456822-108538910:+ chr9:108510471:+ FKTN ENSG00000106692.15 protein_coding + + chr9:105558122-105653820:+ chr9:105615278:+ chr9:108320403-108416101:+ chr9:108377559:+ chr9:105765594 chr9:105609454 NA NA chr9:108527875 chr9:108371735 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TRIC|36-226|1.6e-84^Gly_transporter|46-95|1.3e-05^Gly_transporter|138-158|0.022 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.05Mb];LOCAL_REARRANGEMENT:+:[53426] 1 10 1 9.38 ONLY_REF_SPLICE YES_LDAS 0.1327 GT 1.9656 AG 1.9656 ENST00000374692.8 1-660 ENST00000357998.10 781-1386 chr9|+|[0]105694661-105694772[0]|[1]105705597-105705753[1]|[2]105721537-105721721[0]|[1]105722534-105722621[1]|[2]105748073-105748190[2]<==>chr9|+|[0]105615278-105615407[0]|[1]105617959-105618092[2]|[0]105619934-105620061[1]|[2]105635051-105635264[2] atggattctccatgggacgagttggctctggccttctcccgcacgtccatgtttcccttttttgacatcgcgcactatctagtgtcagtgatggcggtgaaacgtcagccgggagcagctgcattggcatggaagaatcctatttcaagctggtttactgctatgctccactgttttggtggaggaattttatcctgtctactgcttgcagagcctccattgaagtttcttgcaaaccacactaacatattactggcatcttcaatctggtatattacatttttttgcccgcatgacctagtttcccagggctattcatatctacctgttcaactactggcttcgggaatgaaggaagtgaccagaacttggaaaatagtaggtggagtcacacatgctaatagctattacaaaaatggctggatagtcatgatagctattggatgggcccgaggtgcaggtggtaccattataacgaattttgagaggttggtaaaaggagattggaaaccagaaggtgatgaatggctgaagatgtcataccctgccaaggtaaccctgctggggtcagttatcttcacattccagcacacccagcatctggcaatatcaaagcataatcttatgttcctttataccatctttattgtggccacaaagCAGTACCTTGATGATAACACTGTGGAAGCTGTGGCCTTTCGGAAGAGTGCAAAGGAATTACTGCAACTAGCAGCGAAAACATTAAACAAATTGGGAGTACCATTCTGGCTGAGCAGTGGAACTTGTCTAGGATGGTATCGACAATGCAACATTATTCCTTATAGCAAAGATGTTGACCTAGGAATTTTTATACAAGATTACAAATCTGATATTATTTTAGCATTTCAGGATGCAGGACTTCCGCTCAAACACAAATTTGGGAAGGTAGAAGACAGCTTGGAACTATCCTTCCAGGGAAAAGATGATGTAAAACTTGATGTTTTTTTCTTCTATGAAGAAACTGATCACATGTGGAATGGAGGCACTCAGGCCAAAACAGGAAAAAAATTCAAATACCTGTTTCCGAAGTTTACACTGTGCTGGACTGAGTTTGTAGACATGAAGGTCCATGTACCCTGTGAAACCCTCGAATACATTGAAGCCAACTATGGTAAGACCTGGAAGATTCCTGTAAAGACGTGGGACTGGAAGCGCTCTCCTCCCAATGTGCAACCCAATGGAATCTGGCCTATTTCTGAGTGGGATGAGGTTATCCAGTTATATTGA MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFGGGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGKDDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIEANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33341 LARS2::KIF15 ENSG00000011376.12::ENSG00000163808.17 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2345 FALSE NA FALSE NA LARS2 ENSG00000011376.12 protein_coding + + chr3:45388561-45554726:+ chr3:45388680:+ chr3:45430053-45596218:+ chr3:45430172:+ KIF15 ENSG00000163808.17 protein_coding + + chr3:44761721-44873376:+ chr3:44826039:+ chr3:44803213-44914868:+ chr3:44867531:+ chr3:45389270,chr3:45389271 chr3:44816525,chr3:44816523 NA NA chr3:45430762,chr3:45430763 chr3:44858017,chr3:44858015 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.52Mb] 17 0 17 0 ONLY_REF_SPLICE YES_LDAS 0.2318 GT 1.8892 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-564 chr3:44861888-44861981:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33342 NDST3::USP53 ENSG00000164100.9::ENSG00000145390.12 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2344 TRUE 4295 TRUE 1625 NDST3 ENSG00000164100.9 protein_coding + + chr4:118033618-118258634:+ chr4:118143684:+ chr4:118954773-119179789:+ chr4:119064839:+ USP53 ENSG00000145390.12 protein_coding + + chr4:119212587-119295518:+ chr4:119245337:+ chr4:120133742-120216673:+ chr4:120166492:+ chr4:118178700,chr4:118178689 chr4:119223289,chr4:119223276 NA NA chr4:119099855,chr4:119099844 chr4:120144444,chr4:120144431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame HSNSD|76-506|2.7e-232^Sulfotransfer_1|596-844|7.2e-42^Sulfotransfer_3|598-789|6.1e-07 UCH-PARTIAL|~145-348|1e-28^UCH_1-PARTIAL|~145-322|2.8e-13 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.95Mb] 14 5 14 3.5 ONLY_REF_SPLICE YES_LDAS 0.2386 GT 1.7968 AG 1.7465 ENST00000296499.6 1-1539 ENST00000450251.6 145-3222 chr4|+|[0]118053911-118054891[2]|[0]118105018-118105105[0]|[1]118114806-118114960[2]|[0]118138054-118138239[2]|[0]118143556-118143684[2]<==>chr4|+|[0]119245337-119245429[2]|[0]119248748-119248882[2]|[0]119256246-119256359[2]|[0]119256441-119256523[1]|[2]119259820-119259925[2]|[0]119260507-119260653[2]|[0]119261715-119261864[2]|[0]119267320-119267482[0]|[1]119268268-119268420[0]|[1]119269691-119269837[0]|[1]119271296-119272034[1]|[2]119273632-119273708[0]|[1]119291165-119291261[1]|[2]119292338-119293211[2] atgagttttatcatgaagcttcacagacactttcaaagaacagtcattctgcttgccactttttgtatggtgagcattatcatttctgcttactacctgtacagtggctacaaacaggaaaatgaactctctgagacggcttcagaagttgactgtggcgacctccaacacctaccatatcaactaatggaagtgaaagcaatgaagctttttgatgcctcaaggacagaccccacagtcctagtatttgtagagagccagtactcatctcttggtcaagacatcattatgattctagaatcaagtagattccagtatcacattgaaattgcccctggaaagggagatctcccagtgcttatagacaaaatgaaaggcaaatacattctcattatttatgagaatattttaaagtatataaatatggattcctggaatcgaagccttctagataaatactgtgtagaatatggtgtgggtgtcattggattccacaaaactagtgagaagagtgtacagagctttcagttaaaaggtttccctttttccatatatggaaatcttgcagtaaaagattgttgtattaatcctcattctccattgattcgtgtgaccaaatcttccaagcttgaaaaaggttctttacctggaactgactggacagtttttcagattaatcattcagcctatcaaccagtaatatttgccaaagtaaagaccccagaaaacctttctccttccatctctaaaggtgctttttatgccactattatacatgacctggggcttcatgatggaattcaaagggttctttttggcaacaacttgaacttttggctgcacaagctcatcttcatagatgccatctccttcttatcagggaagaggctgacattgtccttggacaggtacattcttgtggatattgatgatatatttgtgggaaaagagggaacaagaatgaacaccaatgatgtaaaggccctgcttgatactcagaatcttttgcgtgcacaaatcacaaattttacattcaacctgggattttcagggaaattttaccatacaggaactgaagaggaagatgaaggagatgactgtctgttggggtctgtggatgagttctggtggtttcctcacatgtggagccatatgcagccccacctcttccacaatgagtcatctttggtggagcagatgattctcaacaaaaaatttgccttagagcacggcattccaacggacatgggctacgctgtggcccctcaccattcgggcgtctaccctgtacatgttcagctttatgaggcctggaagaaggtctggaatattaaaatcaccagcactgaagaatatccacatctgaagccagctagataccggaggggttttatccacaaaaacatcatggttctcccaagacaaacctgtgggcttttcactcacaccattttctacaaagaatatccagggggtcctaaagagctggataagagtatccaaggaggagaacttttcttcactgtcgtcctcaaccctGTTTTATGGCAATTGGATATATTCCGACGAAGCTTGCGGGTTTTGACTGGACATGTTTGTCAGGGAGATGCCTGTATATTTTGTGCATTGAAGACGATATTTGCACAGTTCCAACACAGTCGAGAAAAAGCACTTCCCTCAGATAACATAAGGCATGCTCTTGCAGAAAGTTTCAAAGATGAGCAGCGATTTCAACTTGGCCTTATGGATGATGCTGCGGAGTGCTTTGAAAATATGTTGGAGAGGATTCATTTTCACATAGTGCCAAGCAGAGATGCAGACATGTGTACCTCTAAATCTTGTATCACTCACCAGAAGTTTGCTATGACTCTGTATGAACAGTGTGTGTGTCGTAGCTGTGGAGCATCGTCAGATCCTCTACCTTTTACAGAATTTGTGCGGTACATTTCTACAACAGCCTTATGCAATGAGGTTGAAAGAATGTTGGAAAGGCATGAACGCTTTAAACCTGAAATGTTTGCAGAATTGCTACAAGCAGCAAATACAACAGATGACTATAGGAAATGTCCTAGTAACTGTGGCCAAAAAATAAAAATTCGCCGTGTTTTAATGAATTGCCCAGAGATTGTTACAATTGGTTTAGTCTGGGACTCCGAGCATTCTGACTTGACCGAAGCTGTTGTTCGGAATCTAGCAACACATCTTTATCTTCCTGGGCTTTTTTATAGAGTTACTGATGAAAATGCCAAAAATAGTGAACTTAACCTTGTTGGTATGATCTGCTACACCAGCCAACATTATTGTGCCTTTGCATTTCACACCAAAAGTTCCAAATGGGTATTTTTTGATGATGCAAATGTGAAAGAGATTGGAACTAGATGGAAAGATGTTGTCTCCAAATGCATTCGATGCCACTTTCAGCCACTACTTTTGTTTTATGCAAACCCAGATGGCACAGCAGTTTCTACTGAGGATGCACTCAGGCAGGTCATCAGCTGGTCACATTACAAATCTGTTGCAGAAAATATGGGATGTGAAAAGCCTGTAATTCATAAGTCAGATAATTTAAAAGAAAATGGATTTGGTGATCAGGCAAAGCAGAGAGAAAATCAGAAATTTCCAACTGATAATATTTCATCATCTAATCGGAGCCACAGTCACACAGGTGTAGGGAAAGGACCAGCTAAGTTAAGTCACATTGATCAAAGGGAAAAGATAAAAGACATTTCCAGAGAATGTGCTCTGAAAGCTATTGAACAGAAAAACTTACTTTCTTCACAAAGGAAAGATTTAGAGAAGGGACAAAGAAAAGATTTAGGACGACATAGAGATTTGGTTGATGAAGACCTTTCACATTTCCAATCTGGATCACCTCCTGCCCCAAATGGTTTTAAACAACATGGGAATCCACATCTATATCATAGTCAAGGAAAAGGATCATATAAACATGACCGAGTTGTACCTCAGAGTCGAGCTTCTGCACAAATAATAAGTTCAAGTAAATCCCAGATTCTTGCTCCAGGAGAGAAAATAACTGGCAAAGTTAAGAGTGACAATGGCACTGGATATGACACAGACAGCAGCCAAGATTCTAGGGATAGAGGAAACAGCTGTGATAGCAGCAGTAAAAGCCGGAACCGAGGTTGGAAACCTATGAGAGAAACATTAAATGTTGATAGTATTTTTAGTGAAAGTGAAAAAAGACAGCATAGTCCAAGACATAAACCAAATATCAGTAATAAGCCTAAATCTAGCAAGGATCCGAGTTTTAGTAATTGGCCAAAAGAGAATCCAAAGCAAAAAGGTTTAATGACCATATATGAAGATGAAATGAAGCAGGAAATAGGAAGCAGAAGTTCCCTTGAATCTAATGGAAAAGGAGCAGAGAAAAATAAAGGCCTTGTAGAGGGTAAAGTGCATGGTGATAATTGGCAGATGCAAAGGACTGAGTCTGGATATGAAAGCAGTGATCACATCAGTAATGGTTCTACTAATTTGGACTCACCTGTTATCGATGGAAATGGTACAGTAATGGATATCAGTGGTGTTAAAGAAACAGTATGCTTCAGTGACCAGATTACGACAAGCAACCTAAATAAAGAACGTGGGGACTGTACCTCCCTTCAGAGCCAACATCACTTAGAAGGCTTTAGAAAAGAACTCAGGAATTTGGAAGCAGGCTATAAATCTCATGAATTCCACCCAGAATCACATTTACAAATAAAAAATCATTTGATAAAAAGATCACATGTACATGAAGACAATGGAAAGTTATTTCCTTCATCCAGTCTACAAATACCCAAGGACCATAATGCAAGAGAACATATCCACCAGTCAGATGAACAGAAACTTGAAAAACCGAATGAATGCAAATTTTCTGAGTGGCTTAATATAGAAAATTCTGAGAGAACAGGTTTGCCTTTTCACGTTGATAACTCTGCTTCTGGGAAGAGAGTGAACAGTAATGAACCATCTTCATTATGGTCTTCACACCTAAGAACTGTTGGGTTAAAGCCAGAAACTGCTCCTCTCATCCAGCAACAAAATATCATGGATCAATGTTACTTTGAGAACTCTCTATCCACAGAATGTATAATTCGGTCAGCCAGCAGATCTGATGGGTGTCAGATGCCAAAACTTTTTTGCCAGAATCTACCACCCCCTTTGCCACCAAAGAAATATGCTATAACCAGTGTGCCACAGTCAGAGAAAAGCGAATCTACACCTGATGTCAAACTTACAGAGGTGTTTAAAGCTACCTCTCATCTTCCGAAGCACAGTTTAAGTACAGCTTCAGAACCAAGTTTAGAAGTGAGTACACATATGAATGATGAAAGACATAAAGAAACATTTCAAGTGAGAGAATGTTTTGGCAACACACCAAACTGTCCATCCAGCTCCTCAACTAACGATTTTCAGGCAAACTCAGGTGCCATTGATGCATTTTGCCAACCAGAACTAGACTCTATTTCTACCTGTCCAAATGAGACAGTTTCATTAACTACCTATTTTTCAGTTGATAGCTGCATGACGGATACATATAGATTGAAATACCATCAGAGGCCCAAGCTCTCTTTTCCAGAGAGCAGTGGCTTTTGTAATAATTCACTATCTTAG MSFIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGYKQENELSETASEVDCGDLQHLPYQLMEVKAMKLFDASRTDPTVLVFVESQYSSLGQDIIMILESSRFQYHIEIAPGKGDLPVLIDKMKGKYILIIYENILKYINMDSWNRSLLDKYCVEYGVGVIGFHKTSEKSVQSFQLKGFPFSIYGNLAVKDCCINPHSPLIRVTKSSKLEKGSLPGTDWTVFQINHSAYQPVIFAKVKTPENLSPSISKGAFYATIIHDLGLHDGIQRVLFGNNLNFWLHKLIFIDAISFLSGKRLTLSLDRYILVDIDDIFVGKEGTRMNTNDVKALLDTQNLLRAQITNFTFNLGFSGKFYHTGTEEEDEGDDCLLGSVDEFWWFPHMWSHMQPHLFHNESSLVEQMILNKKFALEHGIPTDMGYAVAPHHSGVYPVHVQLYEAWKKVWNIKITSTEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYPGGPKELDKSIQGGELFFTVVLNPVLWQLDIFRRSLRVLTGHVCQGDACIFCALKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVPSRDADMCTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCNEVERMLERHERFKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLVWDSEHSDLTEAVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVVSKCIRCHFQPLLLFYANPDGTAVSTEDALRQVISWSHYKSVAENMGCEKPVIHKSDNLKENGFGDQAKQRENQKFPTDNISSSNRSHSHTGVGKGPAKLSHIDQREKIKDISRECALKAIEQKNLLSSQRKDLEKGQRKDLGRHRDLVDEDLSHFQSGSPPAPNGFKQHGNPHLYHSQGKGSYKHDRVVPQSRASAQIISSSKSQILAPGEKITGKVKSDNGTGYDTDSSQDSRDRGNSCDSSSKSRNRGWKPMRETLNVDSIFSESEKRQHSPRHKPNISNKPKSSKDPSFSNWPKENPKQKGLMTIYEDEMKQEIGSRSSLESNGKGAEKNKGLVEGKVHGDNWQMQRTESGYESSDHISNGSTNLDSPVIDGNGTVMDISGVKETVCFSDQITTSNLNKERGDCTSLQSQHHLEGFRKELRNLEAGYKSHEFHPESHLQIKNHLIKRSHVHEDNGKLFPSSSLQIPKDHNAREHIHQSDEQKLEKPNECKFSEWLNIENSERTGLPFHVDNSASGKRVNSNEPSSLWSSHLRTVGLKPETAPLIQQQNIMDQCYFENSLSTECIIRSASRSDGCQMPKLFCQNLPPPLPPKKYAITSVPQSEKSESTPDVKLTEVFKATSHLPKHSLSTASEPSLEVSTHMNDERHKETFQVRECFGNTPNCPSSSSTNDFQANSGAIDAFCQPELDSISTCPNETVSLTTYFSVDSCMTDTYRLKYHQRPKLSFPESSGFCNNSLS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33345 UHRF2::KDM4C ENSG00000147854.17::ENSG00000107077.19 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2346 FALSE NA FALSE NA UHRF2 ENSG00000147854.17 protein_coding + + chr9:6413151-6507054:+ chr9:6434173:+ chr9:6413151-6507054:+ chr9:6434173:+ KDM4C ENSG00000107077.19 protein_coding + + chr9:6720863-7175648:+ chr9:6980925:+ chr9:6720863-7175648:+ chr9:6980925:+ chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA chr9:6459419,chr9:6459420 chr9:6905531,chr9:6905529 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ubiquitin|3-75|3.8e-18^Rad60-SLD|19-73|4.4e-05^TTD|125-312|3.8e-69^C1_2|314-345|0.0027^PHD|331-342|7^PHD_2|342-349|2.6^C1_2|342-373|0.0073^PHD|347-392|4e-15^PHD_2|359-393|2.3e-06^C1_2|381-396|0.36^SAD_SRA|446-498|3.5e-18 53-BP1_Tudor-PARTIAL|~922-933|0.00064^DUF4609-PARTIAL|~922-923|0.00024^LBR_tudor|939-983|1.2e-05^Tudor_2|940-974|2.7e-18^53-BP1_Tudor|943-1026|0.0045^Tudor_3|953-974|0.012^Tudor_5|965-974|2.8 ["UHRF2:Oncogene"];["KDM4C:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.21Mb] 6 4 6 3.9 ONLY_REF_SPLICE YES_LDAS 0.135 GT 1.9086 AG 1.9656 ENST00000468435.6 1-644 ENST00000381309.8 922-3171 chr9|+|[0]6413491-6413643[2]|[0]6420912-6421142[2]|[0]6433914-6434173[1]<==>chr9|+|[0]6980925-6981118[1]|[2]6984166-6984404[0]|[1]6986344-6986666[2]|[0]6990416-6990524[0]|[1]7011698-7011879[2]|[0]7013788-7014001[0]|[1]7015853-7015929[2]|[0]7046862-7046917[1]|[2]7049092-7049200[2]|[0]7103685-7103870[2]|[0]7128066-7128236[2]|[0]7165238-7165357[2]|[0]7169798-7169890[2]|[0]7174553-7174729[2] atgtggatacaggttcgcaccattgatggctccaagacgtgcaccattgaggacgtgtctcgcaaagccacgattgaggagctgcgcgagcgggtgtgggcgctgttcgacgtgcggcccgaatgccagcgcctcttctaccggggcaagcagttggaaaatggatataccttatttgattatgatgttggactgaatgatataattcagctgctagttcgcccagaccctgatcatcttcctggcacatctacacagattgaggctaaaccctgttctaatagtccacctaaagtaaagaaagctccgagggtaggaccttccaatcagccatctacatcagctcgtgcccgtcttattgatcctggctttggaatatataaggtaaatgaattggtggatgccagagatgtcggccttggtgcttggtttgaagcacacatacatagtgttactagagcttctgatggacagtcacgtggcaaaactccactgaagaatggcagttcttgtaaaaggactaatggaaatataaagcataaatccaaagagaacacaaataaattggacagtgtaccctctacgtctaattcagactgtgttgctgctgatgaagacgttatttaccatatccagtatgatgaTGCACTTGCAGGAAAGACATGGTGAAGATTTCAATGGATATCTTTGTGAGGAAATTTCAGCCAGACAGATATCAGCTTTGGAAACAAGGAAAGGATATATACACCATTGATCACACGAAGCCTACTCCAGCATCCACCCCTGAAGTAAAAGCATGGCTGCAGAGGAGGAGGAAAGTAAGAAAAGCATCCCGAAGCTTCCAGTGTGCTAGGTCTACCTCTAAAAGGCCTAAGGCTGATGAGGAAGAGGAAGTGTCAGATGAAGTCGATGGGGCAGAGGTCCCTAACCCCGACTCAGTCACAGATGACCTCAAGGTCAGTGAAAAGTCAGAAGCAGCAGTGAAGCTGAGGAACACAGAAGCATCTTCAGAAGAAGAGTCATCTGCTAGCAGGATGCAGGTGGAGCAGAATTTATCAGATCATATCAAACTCTCAGGAAACAGCTGCTTAAGTACATCTGTAACAGAAGACATAAAAACTGAGGATGACAAAGCTTATGCATATAGAAGTGTACCTTCTATATCCAGTGAGGCTGATGATTCCATTCCATTGTCTAGTGGCTATGAGAAGCCCGAGAAATCAGACCCATCCGAGCTTTCATGGCCAAAGTCACCTGAGTCATGCTCATCAGTGGCAGAGAGTAATGGTGTGTTAACAGAGGGAGAAGAGAGTGATGTGGAGAGCCATGGGAATGGCCTTGAACCTGGGGAAATCCCAGCGGTCCCCAGTGGAGAGAGAAATAGCTTCAAAGTCCCCAGTATAGCAGAGGGAGAGAACAAAACCTCTAAGAGTTGGCGCCATCCACTTAGCAGGCCTCCAGCAAGATCTCCGATGACTCTTGTGAAGCAGCAGGCGCCAAGTGATGAAGAATTGCCTGAGGTTCTGTCCATTGAGGAGGAAGTGGAAGAAACAGAGTCTTGGGCGAAACCTCTCATCCACCTTTGGCAGACGAAGTCCCCTAACTTCGCAGCTGAGCAAGAGTATAATGCAACAGTGGCCAGGATGAAGCCACACTGTGCCATCTGCACTCTGCTCATGCCGTACCACAAGCCAGATAGCAGCAATGAAGAAAATGATGCTAGATGGGAGACAAAATTAGATGAAGTCGTTACATCGGAGGGAAAGACTAAGCCCCTCATACCAGAGATGTGTTTTATTTATAGTGAAGAAAATATAGAATATTCTCCACCCAATGCCTTCCTTGAAGAGGATGGAACAAGTCTCCTTATTTCCTGTGCAAAGTGCTGCGTACGGGTTCATGCAAGTTGTTATGGTATTCCTTCTCATGAGATCTGTGATGGATGGCTGTGTGCCCGGTGCAAAAGAAATGCGTGGACAGCAGAATGCTGTCTCTGCAATTTGAGAGGAGGTGCTCTTAAGCAAACGAAGAACAATAAGTGGGCCCATGTCATGTGCGCCGTTGCGGTCCCAGAAGTTCGATTCACTAATGTCCCAGAAAGGACACAAATAGATGTAGGCAGAATACCTTTACAGAGGTTAAAATTGAAATGCATCTTCTGCAGACACCGGGTTAAGAGGGTCTCTGGAGCCTGCATCCAGTGTTCCTACGGTCGCTGCCCGGCCTCCTTCCATGTCACTTGTGCCCATGCTGCTGGGGTACTGATGGAGCCTGATGACTGGCCTTATGTGGTGAACATTACATGCTTTCGACATAAGGTCAACCCCAACGTGAAGTCCAAGGCTTGCGAGAAGGTCATTTCCGTGGGTCAAACGGTCATCACGAAGCATCGGAACACCCGGTATTACAGTTGCAGAGTGATGGCTGTGACATCGCAGACCTTCTATGAGGTCATGTTTGATGATGGCTCCTTTAGCAGAGACACATTTCCTGAGGATATCGTGAGCCGAGACTGTCTGAAGCTGGGCCCACCTGCTGAGGGAGAAGTCGTCCAAGTCAAGTGGCCCGATGGCAAACTCTATGGAGCAAAATATTTTGGATCAAATATTGCCCACATGTACCAGGTTGAGTTTGAAGATGGATCCCAGATAGCAATGAAGAGAGAGGACATCTACACTTTAGATGAAGAGTTACCCAAGAGAGTGAAAGCTCGATTTTCCACAGCCTCTGACATGCGATTTGAAGACACGTTTTATGGAGCAGACATTATCCAAGGGGAGAGAAAGAGACAAAGAGTGCTGAGCTCCAGGTTTAAGAATGAATATGTGGCCGACCCTGTATACCGCACTTTTTTGAAGAGCTCTTTCCAGAAGAAGTGCCAGAAGAGACAGTAG MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDPDHLPGTSTQIEAKPCSNSPPKVKKAPRVGPSNQPSTSARARLIDPGFGIYKVNELVDARDVGLGAWFEAHIHSVTRASDGQSRGKTPLKNGSSCKRTNGNIKHKSKENTNKLDSVPSTSNSDCVAADEDVIYHIQYDDALAGKTW*RFQWISL*GNFSQTDISFGNKERIYTPLITRSLLQHPPLK*KHGCRGGGK*EKHPEASSVLGLPLKGLRLMRKRKCQMKSMGQRSLTPTQSQMTSRSVKSQKQQ*S*GTQKHLQKKSHLLAGCRWSRIYQIISNSQETAA*VHL*QKT*KLRMTKLMHIEVYLLYPVRLMIPFHCLVAMRSPRNQTHPSFHGQSHLSHAHQWQRVMVC*QREKRVMWRAMGMALNLGKSQRSPVEREIASKSPV*QRERTKPLRVGAIHLAGLQQDLR*LL*SSRRQVMKNCLRFCPLRRKWKKQSLGRNLSSTFGRRSPLTSQLSKSIMQQWPG*SHTVPSALCSCRTTSQIAAMKKMMLDGRQN*MKSLHRRERLSPSYQRCVLFIVKKI*NILHPMPSLKRMEQVSLFPVQSAAYGFMQVVMVFLLMRSVMDGCVPGAKEMRGQQNAVSAI*EEVLLSKRRTISGPMSCAPLRSQKFDSLMSQKGHK*M*AEYLYRG*N*NASSADTGLRGSLEPASSVPTVAARPPSMSLVPMLLGY*WSLMTGLMW*TLHAFDIRSTPT*SPRLARRSFPWVKRSSRSIGTPGITVAE*WL*HRRPSMRSCLMMAPLAETHFLRIS*AETV*SWAHLLREKSSKSSGPMANSMEQNILDQILPTCTRLSLKMDPR*Q*RERTSTL*MKSYPRE*KLDFPQPLTCDLKTRFMEQTLSKGRERDKEC*APGLRMNMWPTLYTALF*RALSRRSARRDS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33347 LIMS2::SAP130 ENSG00000072163.20::ENSG00000136715.19 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2347 FALSE NA FALSE NA LIMS2 ENSG00000072163.20 protein_coding - - chr2:127638381-127681786:- chr2:127654424:- chr2:128395956-128439360:- chr2:128411998:- SAP130 ENSG00000136715.19 protein_coding - - chr2:127941217-128028120:- chr2:127945559:- chr2:128698791-128785694:- chr2:128703133:- chr2:127653038 chr2:127945965 NA NA chr2:128410612 chr2:128703539 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF678|27-47|0.31^zf-RRN7|38-42|0.32^zf_UBZ|38-51|0.0012^zf-C4pol|38-45|2.5^LIM|39-95|2e-18^zf-RRN7|65-90|0.0069^zf_UBZ|65-76|0.036^zf-RRN7|96-105|0.23^LIM|100-154|1.6e-15^zf_UBZ|100-107|2.8^RRP4_S1|101-120|0.0021^DUF678|123-136|0.42^zf-RRN7|138-154|0.016^zf-C4pol|144-157|3.9^zf-RRN7|160-171|8.8e-06^zf_UBZ|161-173|0.0013^LIM|164-216|7.9e-14^DUF678|184-198|0.18^zf_UBZ|186-202|0.0021^zf-RRN7|190-194|0.33^zf-RRN7|206-214|1.5^zf-C4pol|210-240|0.00071^zf-RRN7|220-226|0.4^LIM|222-277|6.5e-19^RRP4_S1|231-244|0.15^zf_UBZ|244-258|0.0015^zf-C4pol|245-288|0.013^zf-RRN7|246-251|0.98^zf-RRN7|280-288|1.9^zf_UBZ|280-289|1.1^LIM|281-335|5e-14^RRP4_S1|286-317|0.18^DUF678|297-320|0.00031^zf_UBZ|305-314|0.069^zf-RRN7|307-313|0.42^zf-C4pol|307-354|0.0027^zf-RRN7|328-332|0.28^zf_UBZ|328-339|0.019 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.26Mb] 4 4 4 4 ONLY_REF_SPLICE YES_LDAS 0.109 GT 1.7819 AG 1.5329 ENST00000324938.9 1-431 ENST00000643581.2 2798-3174 chr2|-|[1]127654424-127654544[1]|[0]127654830-127654896[0]|[2]127657403-127657562[2]|[1]127664306-127664388[0]<==>chr2|-|[2]127942006-127942164[0]|[2]127942424-127942537[0]|[2]127945456-127945559[1] atggcggcccggctgggtgcgctggccgcgtcggggctgtaccggcggcgccagcaccggcagagcccgccgccagccacgggcaatatgtcggacgccttggccaacgccgtgtgccagcgctgccaggcccgcttctcccccgccgagcgcattgtcaacagcaatggggagctgtaccatgagcactgcttcgtgtgtgcccagtgcttccggcccttccccgaggggctcttctatgagtttgaaggccggaagtactgcgaacacgacttccaaatgctgtttgctccgtgctgtggatcctgcggtgagttcatcattggccgcgtcatcaaggccatgaacaacaactggcacccgggctgcttccgctgcgagctgtgtgatgtggagctggctgacctgggctttgtgaagaatgccggcagAGGAGAAGAAAGCTATGCTGCAGGAAATAGCTAATCAGAAAGGAGTATCCTGTCGTGCTCAAGGCTGGAAAGTCCACCTCTGTGCTGCCCAGTTACTACAGCTGACGAATCTAGAACATGATGTCTATGAAAGACTTACTAACCTGCAGGAAGGGATTATCCCAAAGAAAAAAGCAGCAACAGATGATGATCTCCACCGAATAAACGAACTGATACAGGGAAATATGCAGAGGTGTAAACTTGTGATGGATCAAATCAGTGAAGCCAGAGACTCCATGCTTAAGGTTTTAGATCATAAAGACCGTGTCCTGAAGCTGCTTAACAAGAACGGGACTGTCAAAAAAGTGTCCAAATTGAAGCGAAAGGAAAAAGTCTAG MAARLGALAASGLYRRRQHRQSPPPATGNMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGSCGEFIIGRVIKAMNNNWHPGCFRCELCDVELADLGFVKNAGRGEESYAAGNS*SERSILSCSRLESPPLCCPVTTADESRT*CL*KTY*PAGRDYPKEKSSNR**SPPNKRTDTGKYAEV*TCDGSNQ*SQRLHA*GFRS*RPCPEAA*QERDCQKSVQIEAKGKSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33348 NDST3::USP53 ENSG00000164100.9::ENSG00000145390.12 NCIH661 SRR8616158 SRR8670702 LUNG carcinoma (large_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4295 TRUE 1625 NDST3 ENSG00000164100.9 protein_coding + + chr4:118033618-118258634:+ chr4:118143684:+ chr4:118954773-119179789:+ chr4:119064839:+ USP53 ENSG00000145390.12 protein_coding + + chr4:119212587-119295518:+ chr4:119239218:+ chr4:120133742-120216673:+ chr4:120160373:+ chr4:118178700,chr4:118178689 chr4:119223289,chr4:119223276 NA NA chr4:119099855,chr4:119099844 chr4:120144444,chr4:120144431 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.95Mb] 3 8 3 4.5 ONLY_REF_SPLICE YES_LDAS 0.1022 GT 1.7968 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33350 PVT1::SNTB1 ENSG00000249859.14::ENSG00000172164.15 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2349 FALSE NA FALSE NA PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ SNTB1 ENSG00000172164.15 protein_coding - - chr8:120535745-120813273:- chr8:120542000:- chr8:121547985-121825513:- chr8:121554240:- chr8:127803739,chr8:127803816,chr8:127803816,chr8:127803978,chr8:127804000,chr8:127804000,chr8:127803233,chr8:127808948,chr8:127809029,chr8:127809029,chr8:127816682,chr8:127816733,chr8:127816711,chr8:127841717,chr8:127841892,chr8:127841498,chr8:127841491,chr8:127841502,chr8:127872359,chr8:127872373,chr8:127871990,chr8:127816705,chr8:127803949,chr8:127841523,chr8:127803190,chr8:127841787,chr8:127803923,chr8:127816726,chr8:127816744,chr8:127872224,chr8:127841523,chr8:127803953,chr8:127803161 chr8:120542663,chr8:120542578,chr8:120633529,chr8:120542576,chr8:120542470,chr8:120633425,chr8:120542569,chr8:120744136,chr8:120744139,chr8:120543976,chr8:120542514,chr8:120542464,chr8:120542477,chr8:120542571,chr8:120542566,chr8:120542449,chr8:120542453,chr8:120542445,chr8:120542568,chr8:120542591,chr8:120542569,chr8:120542436,chr8:120542520,chr8:120542543,chr8:120542612,chr8:120542612,chr8:120542637,chr8:120542637,chr8:120542449,chr8:120542449,chr8:120542420,chr8:120542441,chr8:120542465 NA NA chr8:128815985,chr8:128816062,chr8:128816062,chr8:128816224,chr8:128816246,chr8:128816246,chr8:128815479,chr8:128821194,chr8:128821275,chr8:128821275,chr8:128828928,chr8:128828979,chr8:128828957,chr8:128853963,chr8:128854138,chr8:128853744,chr8:128853737,chr8:128853748,chr8:128884605,chr8:128884619,chr8:128884236,chr8:128828951,chr8:128816195,chr8:128853769,chr8:128815436,chr8:128854033,chr8:128816169,chr8:128828972,chr8:128828990,chr8:128884470,chr8:128853769,chr8:128816199,chr8:128815407 chr8:121554903,chr8:121554818,chr8:121645769,chr8:121554816,chr8:121554710,chr8:121645665,chr8:121554809,chr8:121756376,chr8:121756379,chr8:121556216,chr8:121554754,chr8:121554704,chr8:121554717,chr8:121554811,chr8:121554806,chr8:121554689,chr8:121554693,chr8:121554685,chr8:121554808,chr8:121554831,chr8:121554809,chr8:121554676,chr8:121554760,chr8:121554783,chr8:121554852,chr8:121554852,chr8:121554877,chr8:121554877,chr8:121554689,chr8:121554689,chr8:121554660,chr8:121554681,chr8:121554705 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr8:6.98Mb] 10640 10720 10640 10720 ONLY_REF_SPLICE YES_LDAS 280.7346 GT 1.8295 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33352 LINC02964::MTBP ENSG00000286122.1::ENSG00000172167.8 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2350 FALSE NA FALSE NA LINC02964 ENSG00000286122.1 lncRNA + + chr8:125648327-126008930:+ chr8:125942691:+ chr8:126660571-127021174:+ chr8:126954935:+ MTBP ENSG00000172167.8 protein_coding + + chr8:120445400-120542133:+ chr8:120538694:+ chr8:121457640-121554373:+ chr8:121550934:+ chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975293,chr8:125975282,chr8:125975290,chr8:125975277,chr8:125975276,chr8:125975238,chr8:125975290,chr8:125975289,chr8:125975108,chr8:125975235 chr8:120528292,chr8:120528294,chr8:120528301,chr8:120528298,chr8:120528288,chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528286,chr8:120528287,chr8:120528288,chr8:120528393,chr8:120528136 NA NA chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987537,chr8:126987526,chr8:126987534,chr8:126987521,chr8:126987520,chr8:126987482,chr8:126987534,chr8:126987533,chr8:126987352,chr8:126987479 chr8:121540532,chr8:121540534,chr8:121540541,chr8:121540538,chr8:121540528,chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540526,chr8:121540527,chr8:121540528,chr8:121540633,chr8:121540376 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 56 22 34.27 13.65 ONLY_REF_SPLICE YES_LDAS 0.6298 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33353 NOS2::MYO18A ENSG00000007171.19::ENSG00000196535.20 NCIH524 SRR8616160 SRR8670694 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2351 FALSE NA FALSE NA NOS2 ENSG00000007171.19 protein_coding - - chr17:27756766-27800529:- chr17:27772308:- chr17:26083792-26127555:- chr17:26099334:- MYO18A ENSG00000196535.20 protein_coding - - chr17:29071122-29180398:- chr17:29103664:- chr17:27398140-27507416:- chr17:27430682:- chr17:27771485,chr17:27771485,chr17:27771494 chr17:29106838,chr17:29106833,chr17:29106836 NA NA chr17:26098511,chr17:26098511,chr17:26098520 chr17:27433856,chr17:27433851,chr17:27433854 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NO_synthase|137-497|9.9e-181^Flavodoxin_1|541-672|5.3e-39^FAD_binding_1|726-947|4.9e-87^NAD_binding_1|979-1092|4.6e-25 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.27Mb] 35 15 35 15 ONLY_REF_SPLICE YES_LDAS 0.6571 GT 1.7968 AG 1.7232 ENST00000313735.11 1-1704 ENST00000527372.7 3442-6165 chr17|-|[2]27772308-27772452[2]|[1]27773161-27773243[0]|[2]27774257-27774451[0]|[2]27778690-27778791[0]|[2]27778882-27779056[2]|[1]27780767-27780906[0]|[2]27781036-27781177[2]|[1]27782015-27782106[0]|[2]27782944-27783106[2]|[1]27787678-27787826[0]|[2]27788809-27788931[0]|[2]27789604-27789688[2]|[1]27798700-27798809[0]<==>chr17|-|[2]29074770-29074914[2]|[1]29082316-29082438[2]|[1]29085604-29085648[2]|[1]29086438-29086577[0]|[2]29086936-29087121[0]|[2]29089961-29090098[0]|[2]29090532-29090615[0]|[2]29090810-29090926[0]|[2]29092343-29092456[0]|[2]29092855-29093001[0]|[2]29093323-29093427[0]|[2]29093980-29094090[0]|[2]29094650-29094850[0]|[2]29094936-29095059[2]|[1]29096761-29096915[0]|[2]29097223-29097350[1]|[0]29097788-29097899[0]|[2]29098105-29098224[0]|[2]29098356-29098445[0]|[2]29098826-29098969[0]|[2]29099634-29099762[0]|[2]29103599-29103664[0] atggcctgtccttggaaatttctgttcaagaccaaattccaccagtatgcaatgaatggggaaaaagacatcaacaacaatgtggagaaagccccctgtgccacctccagtccagtgacacaggatgaccttcagtatcacaacctcagcaagcagcagaatgagtccccgcagcccctcgtggagacgggaaagaagtctccagaatctctggtcaagctggatgcaaccccattgtcctccccacggcatgtgaggatcaaaaactggggcagcgggatgactttccaagacacacttcaccataaggccaaagggattttaacttgcaggtccaaatcttgcctggggtccattatgactcccaaaagtttgaccagaggacccagggacaagcctacccctccagatgagcttctacctcaagctatcgaatttgtcaaccaatattacggctccttcaaagaggcaaaaatagaggaacatctggccagggtggaagcggtaacaaaggagatagaaacaacaggaacctaccaactgacgggagatgagctcatcttcgccaccaagcaggcctggcgcaatgccccacgctgcattgggaggatccagtggtccaacctgcaggtcttcgatgcccgcagctgttccactgcccgggaaatgtttgaacacatctgcagacacgtgcgttactccaccaacaatggcaacatcaggtcggccatcaccgtgttcccccagcggagtgatggcaagcacgacttccgggtgtggaatgctcagctcatccgctatgctggctaccagatgccagatggcagcatcagaggggaccctgccaacgtggaattcactcagctgtgcatcgacctgggctggaagcccaagtacggccgcttcgatgtggtccccctggtcctgcaggccaatggccgtgaccctgagctcttcgaaatcccacctgaccttgtgcttgaggtggccatggaacatcccaaatacgagtggtttcgggaactggagctaaagtggtacgccctgcctgcagtggccaacatgctgcttgaggtgggcggcctggagttcccagggtgccccttcaatggctggtacatgggcacagagatcggagtccgggacttctgtgacgtccagcgctacaacatcctggaggaagtgggcaggagaatgggcctggaaacgcacaagctggcctcgctctggaaagaccaggctgtcgttgagatcaacattgctgtgctccatagtttccagaagcagaatgtgaccatcatggaccaccactcggctgcagaatccttcatgaagtacatgcagaatgaataccggtcccgtgggggctgcccggcagactggatttggctggtccctcccatgtctgggagcatcacccccgtgtttcaccaggagatgctgaactacgtcctgtcccctttctactactatcaggtagaggcctggaaaacccatgtctggcaggacgagaagcggagacccaagagaagagagattccattgaaagtcttggtcaaagctgtgctctttgcctgtatgctgatgcgcaagacaatggcgtcccgagtcagagtcaccatcctctttgcgacagagacaggaaaatcagaggcgctggcctgggacctgggggccttattcagctgtgccttcaaccccaagGCAGTGGAGGAGCTGCTGGAGTGCTTGGATCTGGAGAAGAGCAGCTGCTGCATGGGCCTGAGCCGGGTGTTCTTCCGGGCGGGCACCTTGGCACGGCTGGAGGAGCAGCGGGATGAACAAACCAGCAGGAACCTAACCCTGTTCCAAGCAGCCTGCAGGGGCTACCTGGCCCGCCAGCACTTCAAGAAGAGAAAGATCCAGGACCTGGCCATTCGCTGTGTACAGAAGAACATCAAGAAGAACAAAGGGGTGAAGGACTGGCCCTGGTGGAAGCTTTTTACCACAGTGAGGCCCCTCATCGAAGTACAGCTGTCAGAGGAGCAGATCCGGAACAAAGACGAGGAGATCCAGCAGCTGCGGAGCAAGCTCGAGAAGGCGGAGAAGGAGAGGAACGAGCTGCGGCTCAACAGTGACCGGCTGGAGAGCCGGATCTCAGAGCTGACATCGGAGCTGACAGATGAGCGTAACACAGGAGAGTCCGCCTCCCAGCTGCTGGACGCGGAGACAGCAGAGAGGCTCCGGGCTGAGAAGGAGATGAAGGAACTGCAGACCCAGTACGATGCACTGAAGAAGCAGATGGAGGTTATGGAAATGGAGGTGATGGAGGCCCGTCTCATCCGGGCAGCGGAGATCAACGGGGAAGTGGATGATGATGATGCAGGTGGCGAGTGGCGGCTGAAGTATGAGCGGGCTGTGCGGGAGGTGGACTTCACCAAGAAACGGCTCCAGCAGGAGTTTGAGGACAAGCTGGAGGTGGAGCAGCAGAACAAGAGGCAGCTGGAACGGCGGCTCGGGGACCTGCAGGCAGATAGTGAGGAGAGTCAGCGGGCTCTGCAGCAGCTCAAGAAGAAGTGCCAGCGACTGACGGCTGAGCTGCAAGACACCAAGCTGCACCTGGAGGGCCAGCAGGTCCGCAACCACGAACTGGAGAAGAAGCAGAGGAGGTTTGACAGTGAGCTCTCGCAGGCGCATGAGGAGGCCCAGCGGGAGAAGCTGCAGCGGGAGAAGCTGCAGCGGGAGAAGGACATGCTCCTCGCTGAGGCTTTCAGCCTGAAGCAGCAACTAGAGGAAAAAGACATGGACATTGCAGGGTTCACCCAGAAGGTTGTGTCTCTAGAGGCAGAGCTCCAGGACATTTCTTCCCAAGAGTCCAAGGATGAGGCTTCTCTGGCCAAGGTCAAGAAACAGCTCCGGGACCTGGAGGCCAAAGTCAAGGATCAGGAAGAAGAGCTGGATGAGCAGGCAGGGACCATCCAGATGCTGGAACAGGCCAAGCTGCGTCTGGAGATGGAGATGGAGCGGATGAGACAGACCCATTCTAAGGAGATGGAGAGTCGGGATGAGGAGGTGGAGGAGGCCCGGCAGTCGTGTCAGAAGAAGTTAAAACAGATGGAGGTGCAGCTAGAGGAAGAGTATGAGGACAAGCAGAAGGTTCTGCGAGAGAAGCGGGAGCTGGAGGGCAAGCTCGCCACCCTCAGCGACCAGGTGAACCGGCGGGACTTTGAGTCAGAGAAGCGGCTGCGGAAGGACCTGAAGCGCACCAAGGCCCTGCTGGCAGATGCCCAGCTCATGCTGGACCACCTGAAGAACAGTGCTCCCAGCAAGCGAGAGATTGCCCAGCTCAAGAACCAGCTGGAGGAGTCAGAGTTCACCTGTGCGGCAGCCGTGAAAGCACGGAAAGCAATGGAGGTGGAGATCGAAGACCTGCACCTGCAGATTGATGACATCGCCAAAGCCAAGACAGCGCTGGAGGAGCAGCTGAGCCGCCTTCAGCGTGAGAAGAATGAGATCCAGAACCGGCTGGAGGAAGATCAGGAAGACATGAACGAATTGATGAAGAAGCACAAGGCTGCCGTGGCTCAGGCTTCCCGGGACCTGGCTCAGATAAATGATCTCCAAGCTCAGCTAGAAGAAGCCAACAAAGAGAAGCAGGAGCTGCAGGAGAAGCTACAAGCCCTCCAGAGCCAGGTGGAGTTCCTGGAGCAGTCCATGGTGGACAAGTCCCTGGTGAGCAGGCAGGAAGCTAAGATACGGGAGCTGGAGACACGCCTGGAGTTTGAAAGGACGCAAGTGAAACGGCTGGAGAGCCTGGCTAGCCGTCTCAAGGAAAACATGGAGAAGCTGACTGAGGAGCGGGATCAGCGCATTGCAGCCGAGAACCGGGAGAAGGAACAGAACAAGCGGCTACAGAGGCAGCTCCGGGACACCAAGGAGGAGATGGGCGAGCTTGCCAGGAAGGAGGCCGAGGCGAGCCGCAAGAAGCACGAACTGGAGATGGATCTAGAAAGCCTGGAGGCTGCTAACCAGAGCCTGCAGGCTGACCTAAAGTTGGCATTCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGATGAGATGGAGAGTGATGAGAATGAGGACCTCATCAACAGTTTGCAGGACATGGTGACAAAGTATCAGAAAAGAAAGAATAAACTTGAGGGAGACTCTGATGTGGACTCGGAGCTGGAGGACCGTGTTGACGGGGTCAAGTCCTGGTTGTCAAAAAACAAGGGACCTTCCAAGGCAGCTTCTGATGATGGCAGCTTAAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGATCGGTCAGATGATGAGCACGACCCTCTCGACAACACCTCCAGACCGCGATACTCCCACAGTTATCTGAGTGACAGCGACACAGAGGCCAAGCTGACGGAGACTAACGCATAG MACPWKFLFKTKFHQYAMNGEKDINNNVEKAPCATSSPVTQDDLQYHNLSKQQNESPQPLVETGKKSPESLVKLDATPLSSPRHVRIKNWGSGMTFQDTLHHKAKGILTCRSKSCLGSIMTPKSLTRGPRDKPTPPDELLPQAIEFVNQYYGSFKEAKIEEHLARVEAVTKEIETTGTYQLTGDELIFATKQAWRNAPRCIGRIQWSNLQVFDARSCSTAREMFEHICRHVRYSTNNGNIRSAITVFPQRSDGKHDFRVWNAQLIRYAGYQMPDGSIRGDPANVEFTQLCIDLGWKPKYGRFDVVPLVLQANGRDPELFEIPPDLVLEVAMEHPKYEWFRELELKWYALPAVANMLLEVGGLEFPGCPFNGWYMGTEIGVRDFCDVQRYNILEEVGRRMGLETHKLASLWKDQAVVEINIAVLHSFQKQNVTIMDHHSAAESFMKYMQNEYRSRGGCPADWIWLVPPMSGSITPVFHQEMLNYVLSPFYYYQVEAWKTHVWQDEKRRPKRREIPLKVLVKAVLFACMLMRKTMASRVRVTILFATETGKSEALAWDLGALFSCAFNPKAVEELLECLDLEKSSCCMGLSRVFFRAGTLARLEEQRDEQTSRNLTLFQAACRGYLARQHFKKRKIQDLAIRCVQKNIKKNKGVKDWPWWKLFTTVRPLIEVQLSEEQIRNKDEEIQQLRSKLEKAEKERNELRLNSDRLESRISELTSELTDERNTGESASQLLDAETAERLRAEKEMKELQTQYDALKKQMEVMEMEVMEARLIRAAEINGEVDDDDAGGEWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLKKKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKNQLEESEFTCAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEAEASRKKHELEMDLESLEAANQSLQADLKLAFKRIGDLQAAIEDEMESDENEDLINSLQDMVTKYQKRKNKLEGDSDVDSELEDRVDGVKSWLSKNKGPSKAASDDGSLKSSSPTSYWKSLAPDRSDDEHDPLDNTSRPRYSHSYLSDSDTEAKLTETNA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Esophageal carcinoma OESOPHAGUS no_match 26125726 FALSE 27449271 FALSE YES Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33363 NBAS::ENSG00000226764 ENSG00000151779.14::ENSG00000226764.2 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 4317 TRUE 1638 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- ENSG00000226764 ENSG00000226764.2 lncRNA - - chr2:15997049-16062885:- chr2:15997609:- chr2:16137171-16203007:- chr2:16137731:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 485 955 485 749.87 INCL_NON_REF_SPLICE YES_LDAS 15.1151 GT 1.8256 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33364 NBAS::ENSG00000226764 ENSG00000151779.14::ENSG00000226764.2 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA TRUE 4317 TRUE 1638 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- ENSG00000226764 ENSG00000226764.2 lncRNA - - chr2:15997049-16062885:- chr2:15997412:- chr2:16137171-16203007:- chr2:16137534:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 438 599 438 205.13 ONLY_REF_SPLICE YES_LDAS 7.8722 GT 1.8256 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33365 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2354 TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15536418:- chr2:15307040-15701464:- chr2:15676542:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15613224:+ chr2:15731302-15774470:+ chr2:15753348:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nbas_N|90-371|7.1e-161^ANAPC4_WD40|133-165|0.003^WD40|137-160|0.023^WD40|230-255|0.24^ANAPC4_WD40|305-347|0.056^WD40|315-345|0.039^PMEI|565-604|0.16 none ["DDX1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_INVERSION:-:+:[29848] 195 179 195 177.59 ONLY_REF_SPLICE YES_LDAS 4.5607 GT 1.9086 AG 1.9329 ENST00000281513.10 1-647 ENST00000676937.1 828-2094 chr2|-|[1]15536418-15536551[0]|[2]15539223-15539356[1]|[0]15551493-15551536[2]|[1]15553426-15553473[2]|[1]15554061-15554138[2]|[1]15556783-15556819[1]|[0]15558580-15558634[0]|[2]15561188-15561304[0]<==>chr2|+|[2]15613224-15613284[2]|[0]15617244-15617342[2]|[0]15618181-15618270[2]|[0]15620208-15620396[2]|[0]15621065-15621116[0]|[1]15623436-15623582[0]|[1]15627054-15627145[2]|[0]15628445-15628517[0]|[1]15628638-15628710[1]|[2]15628797-15628839[2]|[0]15629602-15629697[2]|[0]15629990-15630110[0]|[1]15630776-15630906[2] atggcggcccccgagtcagggccggctttgagtccaggcactgcagagggtgaggaggagacgattctctatgacttgttggtcaacaccgagtggccaccggagactgaagtacagcctagaggcaaccaaaaacatggtgcatcctttatcatcacgaaagcaattcgagatcgtttattatttttacgccaatacatctggtacagcccggcaccttttttgctccctgatggactggttcgcttggttaataaacagataaactggcatttggtacttgcaagcaatggaaagcttttggctgctgttcaagatcagtgtgtggaaatcaggtctgcaaaagatgattttacatccattattgggaaatgtcaagttccgaaagacccgaaaccccagtggagacgggtagcatggagttacgattgtaccctactggcctatgccgaaagcacaggaactgtgagggtgtttgatctcatgggaagtgaactctttgtcatttccccggcatctagttttataggtgacttaagctatgccattgctgggttgatatttttagaatataaagcaagtgcacagtggtctgcagaactcctggtcatcaattaccgaggagaacttagaagttaccttgtaagGGAGCTTCTGATAATTGGAGGTGTTGCAGCCCGGGATCAGCTCTCTGTTTTGGAAAATGGAGTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGACTTGGTGTCAACTGGAAAGCTGAACTTATCTCAAGTTAGATTCCTGGTCCTGGATGAAGCTGATGGGCTTCTTTCTCAAGGTTATTCTGATTTTATAAATAGGATGCACAATCAGATTCCTCAGGTTACCTCTGATGGAAAAAGACTTCAGGTGATTGTTTGCTCTGCCACTTTGCATTCTTTCGATGTAAAGAAACTGTCCGAGAAGATAATGCATTTTCCTACATGGGTTGACTTAAAAGGAGAAGACTCTGTTCCAGATACTGTACACCATGTTGTTGTCCCAGTAAATCCCAAAACTGACAGACTCTGGGAAAGGCTTGGAAAGAGCCACATTAGAACTGATGATGTACATGCAAAAGATAACACAAGACCTGGTGCTAATAGTCCAGAGATGTGGTCTGAAGCTATTAAAATCCTGAAAGGGGAGTATGCTGTCCGGGCAATCAAGGAACATAAGATGGATCAAGCAATTATCTTCTGTAGAACCAAAATTGACTGTGATAACTTGGAGCAGTACTTTATACAACAAGGAGGAGGACCTGATAAAAAAGGACACCAGTTCTCATGTGTTTGTCTTCATGGTGACAGAAAGCCTCATGAGAGAAAGCAAAACTTGGAAAGATTTAAGAAAGGAGATGTAAGATTCTTGATTTGCACAGATGTAGCTGCTAGAGGAATTGATATCCACGGTGTTCCTTATGTTATAAATGTCACTCTGCCCGATGAAAAGCAAAACTACGTACATCGAATTGGCAGAGTAGGAAGAGCTGAAAGGATGGGTCTGGCAATTTCCCTGGTGGCAACAGAAAAAGAAAAGGTTTGGTACCATGTATGTAGCAGCCGTGGAAAAGGGTGTTATAACACAAGACTCAAGGAAGATGGAGGCTGTACCATATGGTACAACGAGATGCAGTTACTATCTGAGATAGAAGAACACCTGAACTGTACCATTTCTCAGGTTGAGCCGGATATAAAGGTACCAGTGGATGAATTTGATGGGAAAGTTACCTACGGTCAGAAAAGGGCTGCTGGTGGTGGAAGCTATAAAGGCCATGTGGATATTTTGGCACCTACTGTTCAAGAGTTGGCTGCCCTTGAAAAGGAGGCGCAGACATCTTTCCTGCATCTTGGCTACCTTCCTAACCAGCTGTTCAGAACCTTCTGA MAAPESGPALSPGTAEGEEETILYDLLVNTEWPPETEVQPRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQVPKDPKPQWRRVAWSYDCTLLAYAESTGTVRVFDLMGSELFVISPASSFIGDLSYAIAGLIFLEYKASAQWSAELLVINYRGELRSYLVRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKEDGGCTIWYNEMQLLSEIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGSYKGHVDILAPTVQELAALEKEAQTSFLHLGYLPNQLFRTF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33366 NBAS::ENSG00000223536 ENSG00000151779.14::ENSG00000223536.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4320 TRUE 1641 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15374608:- chr2:15307040-15701464:- chr2:15514732:- ENSG00000223536 ENSG00000223536.7 lncRNA + + chr2:16728121-16769567:+ chr2:16765012:+ chr2:16909388-16950834:+ chr2:16946279:+ chr2:15373321 chr2:16761368 NA NA chr2:15513445 chr2:16942635 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 190 129 190 124.87 ONLY_REF_SPLICE YES_LDAS 3.8541 GT 1.9086 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33367 XPR1::TRMT1L ENSG00000143324.14::ENSG00000121486.12 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2355 FALSE NA FALSE NA XPR1 ENSG00000143324.14 protein_coding + + chr1:180632022-180890279:+ chr1:180682411:+ chr1:180601158-180859415:+ chr1:180651547:+ TRMT1L ENSG00000121486.12 protein_coding - - chr1:185118101-185157072:- chr1:185128747:- chr1:185087233-185126204:- chr1:185097879:- chr1:180740699 chr1:185130212 NA NA chr1:180709835 chr1:185099344 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame SPX|1-34|6.8e-12^SPX|45-103|3.8e-11^T4_Rnl1_C|48-90|2.8e-05^SPX-PARTIAL|111-121~|1.1e-17 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:4.23Mb] 110 53 110 53 ONLY_REF_SPLICE YES_LDAS 1.9951 GT 1.9899 AG 1.6402 ENST00000367590.9 1-121 ENST00000367506.10 1514-2202 chr1|+|[0]180632202-180632270[2]|[0]180682360-180682411[0]<==>chr1|-|[2]185120019-185120271[2]|[1]185120383-185120509[1]|[0]185123857-185123919[1]|[0]185124944-185125110[2]|[1]185128669-185128747[1] atgaagttcgccgagcacctctccgcgcacatcactcccgagtggaggaagcaatacatccagtatgaggctttcaaggatatgctgtattcagctcaggaccaggcaccttctgtggaagAAAACCCATATAGACAGCTGCCTTGTAACTGTCATGGAAGCATGCCTGGAAAGACAGCAATAGAACTTGGACCTCTGTGGTCAAGTTCCCTTTTCAATACTGGATTCCTCAAAAGAATGCTATTTGAATCTCTTCACCATGGTTTGGATGACATTCAGACCCTAATAAAGACATTAATCTTTGAATCAGAGTGTACGCCTCAAAGTCAGTTTTCAATTCATGCATCTTCAAATGTCAACAAGCAAGAAGAAAATGGTGTATTTATTAAAACTACAGATGACACCACAACAGATAATTACATTGCACAAGGAAAGAGAAAAAGTAATGAAATGATCACAAATTTAGGCAAGAAGCAAAAGACTGATGTCAGTACTGAACATCCTCCCTTTTATTACAACATTCACAGACACAGCATTAAAGGAATGAATATGCCAAAGTTAAAAAAGTTTTTGTGCTATTTATCTCAAGCAGGCTTTCGAGTAAGCCGAACTCATTTTGACCCAATGGGTGTACGCACAGATGCACCTCTGATGCAGTTTAAATCTATCCTTTTAAAGTACAGCACCCCCACCTACACTGGAGGACAGTCAGAAAGCCATGTCCAGTCAGCATCTGAAGATACAGTAACTGAAAGAGTTGAAATGTCAGTGAATGACAAAGCAGAAGCAAGTGGCTGCAGAAGATGGTAA MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGFLKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQFSIHASSNVNKQEENGVFIKTTDDTTTDNYIAQGKRKSNEMITNLGKKQKTDVSTEHPPFYYNIHRHSIKGMNMPKLKKFLCYLSQAGFRVSRTHFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQSESHVQSASEDTVTERVEMSVNDKAEASGCRRW* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33368 NBAS::ENSG00000236989 ENSG00000151779.14::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15366580:- chr2:15307040-15701464:- chr2:15506704:- ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr2:15362236,chr2:15362298,chr2:15362356,chr2:15362406,chr2:15362312 chr2:16098845,chr2:16098907,chr2:16098883,chr2:16098847,chr2:16099023 NA NA chr2:15502360,chr2:15502422,chr2:15502480,chr2:15502530,chr2:15502436 chr2:16238967,chr2:16239029,chr2:16239005,chr2:16238969,chr2:16239145 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 71 42 71 42 ONLY_REF_SPLICE YES_LDAS 1.3832 GT 1.7968 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33369 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2356 TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146528831:- chr3:146232967-146262643:- chr3:146246618:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Mito_carr-PARTIAL|5-41~|1.1e-29 Scramblase-PARTIAL|~95-306|3.1e-106 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:5.54Mb] 58 82 58 77.3 ONLY_REF_SPLICE YES_LDAS 1.6561 GT 1.7819 AG 1.9656 ENST00000507429.5 1-41 ENST00000342435.9 95-957 chr3|+|[0]140942055-140942095[1]<==>chr3|-|[2]146516045-146516101[0]|[2]146517006-146517167[0]|[2]146521544-146521705[0]|[2]146521833-146522053[1]|[0]146525605-146525647[0]|[2]146528614-146528831[1] atgagccagagggacacgctggtgcatctgtttgccggaggGACCTCCAGGATATAGTGGCTACCCTGGGCCCCAGGTCAGCTACCCACCCCCACCAGCCGGCCATTCAGGTCCTGGCCCAGCTGGCTTTCCTGTCCCAAATCAGCCAGTGTATAATCAGCCAGTATATAATCAGCCAGTTGGAGCTGCAGGGGTACCATGGATGCCAGCGCCACAGCCTCCATTAAACTGTCCACCTGGATTAGAATATTTAAGTCAGATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAGTTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGGAAGATACTGATTGCTGTACCCGAAATTGCTGTGGGCCATCTAGACCTTTTACCTTGAGGATTATTGATAATATGGGTCAAGAAGTCATAACTCTGGAGAGACCACTAAGATGTAGCAGCTGTTGTTGTCCCTGCTGCCTTCAGGAGATAGAAATCCAAGCTCCTCCTGGTGTACCAATAGGTTATGTTATTCAGACTTGGCACCCATGTCTACCAAAGTTTACAATTCAAAATGAGAAAAGAGAGGATGTACTAAAAATAAGTGGTCCATGTGTTGTGTGCAGCTGTTGTGGAGATGTTGATTTTGAGATTAAATCTCTTGATGAACAGTGTGTGGTTGGCAAAATTTCCAAGCACTGGACTGGAATTTTGAGAGAGGCATTTACAGACGCTGATAACTTTGGAATCCAGTTCCCTTTAGACCTTGATGTTAAAATGAAAGCTGTAATGATTGGTGCCTGTTTCCTCATTGACTTCATGTTTTTTGAAAGCACTGGCAGCCAGGAACAAAAATCAGGAGTGTGGTAG MSQRDTLVHLFAGGTSRI*WLPWAPGQLPTPTSRPFRSWPSWLSCPKSASV*SASI*SASWSCRGTMDASATASIKLSTWIRIFKSDRSDTDSSAN*TSGSFNRF*N**QI*N*EQLWTEGLLCSGRY*LLYPKLLWAI*TFYLEDY**YGSRSHNSGETTKM*QLLLSLLPSGDRNPSSSWCTNRLCYSDLAPMSTKVYNSK*EKRGCTKNKWSMCCVQLLWRC*F*D*IS**TVCGWQNFQALDWNFERGIYRR**LWNPVPFRP*C*NESCNDWCLFPH*LHVF*KHWQPGTKIRSVV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33370 ENSG00000259704::ENSG00000236989 ENSG00000259704.3::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2359 TRUE 4324 TRUE 1643 ENSG00000259704 ENSG00000259704.3 lncRNA + + chr15:90839641-90853608:+ chr15:90841284:+ chr15:91382871-91396838:+ chr15:91384514:+ ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr15:90852198,chr15:90852195,chr15:90852192 chr2:16094618,chr2:16094621,chr2:16094621 NA NA chr15:91395428,chr15:91395425,chr15:91395422 chr2:16234740,chr2:16234743,chr2:16234743 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 49 26 49 21.49 ONLY_REF_SPLICE YES_LDAS 0.8628 GT 1.5301 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33375 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16073304:+ chr2:16154050-16227323:+ chr2:16213426:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.49Mb] 26 40 26 33.61 ONLY_REF_SPLICE YES_LDAS 0.7296 GT 1.8323 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33376 NBAS::DDX1 ENSG00000151779.14::ENSG00000079785.16 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4318 TRUE 1639 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15551493:- chr2:15307040-15701464:- chr2:15691617:- DDX1 ENSG00000079785.16 protein_coding + + chr2:15591178-15634346:+ chr2:15617244:+ chr2:15731302-15774470:+ chr2:15757368:+ chr2:15273790,chr2:15534805,chr2:15534811 chr2:15596062,chr2:15610758,chr2:15610752 NA NA chr2:15413914,chr2:15674929,chr2:15674935 chr2:15736186,chr2:15750882,chr2:15750876 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Nbas_N|90-371|7.1e-161^ANAPC4_WD40|133-165|0.003^WD40|137-160|0.023^WD40|230-255|0.24^ANAPC4_WD40|305-347|0.056^WD40|315-345|0.039 none ["DDX1:Oncogene"];["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_INVERSION:-:+:[29848] 20 26 20 1.41 ONLY_REF_SPLICE YES_LDAS 0.2621 GT 1.8256 AG 1.5656 ENST00000281513.10 1-379 ENST00000677355.1 1040-1077 chr2|-|[0]15551493-15551536[2]|[1]15553426-15553473[2]|[1]15554061-15554138[2]|[1]15556783-15556819[1]|[0]15558580-15558634[0]|[2]15561188-15561304[0]<==>chr2|+|[1]15617244-15617281[2] atggcggcccccgagtcagggccggctttgagtccaggcactgcagagggtgaggaggagacgattctctatgacttgttggtcaacaccgagtggccaccggagactgaagtacagcctagaggcaaccaaaaacatggtgcatcctttatcatcacgaaagcaattcgagatcgtttattatttttacgccaatacatctggtacagcccggcaccttttttgctccctgatggactggttcgcttggttaataaacagataaactggcatttggtacttgcaagcaatggaaagcttttggctgctgttcaagatcagtgtgtggaaatcaggtctgcaaaagatgattttacatccattattgggaaatgtcaagGTAGATATAGTTGTAGGTACTCCGGGAAGACTAGATGA MAAPESGPALSPGTAEGEEETILYDLLVNTEWPPETEVQPRGNQKHGASFIITKAIRDRLLFLRQYIWYSPAPFLLPDGLVRLVNKQINWHLVLASNGKLLAAVQDQCVEIRSAKDDFTSIIGKCQGRYSCRYSGKTR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact TRUE Lung squamous cell carcinoma LUNG exact 15467874 FALSE 15735269 FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33377 NBAS::ENSG00000223536 ENSG00000151779.14::ENSG00000223536.7 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4320 TRUE 1641 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15374608:- chr2:15307040-15701464:- chr2:15514732:- ENSG00000223536 ENSG00000223536.7 lncRNA + + chr2:16728121-16769567:+ chr2:16767016:+ chr2:16909388-16950834:+ chr2:16948283:+ chr2:15373321 chr2:16761368 NA NA chr2:15513445 chr2:16942635 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 20 58 20 4.13 ONLY_REF_SPLICE YES_LDAS 0.2954 GT 1.9086 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33379 ENSG00000259704::ENSG00000236989 ENSG00000259704.3::ENSG00000236989.5 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2360 TRUE 4324 TRUE 1643 ENSG00000259704 ENSG00000259704.3 lncRNA + + chr15:90839641-90853608:+ chr15:90839900:+ chr15:91382871-91396838:+ chr15:91383130:+ ENSG00000236989 ENSG00000236989.5 lncRNA - - chr2:16085222-16105841:- chr2:16085483:- chr2:16225344-16245963:- chr2:16225605:- chr15:90852198,chr15:90852195,chr15:90852192 chr2:16094618,chr2:16094621,chr2:16094621 NA NA chr15:91395428,chr15:91395425,chr15:91395422 chr2:16234740,chr2:16234743,chr2:16234743 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 16 20 16 4.51 ONLY_REF_SPLICE YES_LDAS 0.251 GT 1.7819 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33380 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16081127:+ chr2:16154050-16227323:+ chr2:16221249:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.49Mb] 15 12 15 2.28 ONLY_REF_SPLICE YES_LDAS 0.2115 GT 1.8323 AG 1.6895 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33381 SLC25A36::PLSCR1 ENSG00000114120.14::ENSG00000188313.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2357 TRUE 4321 TRUE 1642 SLC25A36 ENSG00000114120.14 protein_coding + + chr3:140941830-140980995:+ chr3:140942095:+ chr3:140660672-140699837:+ chr3:140660937:+ PLSCR1 ENSG00000188313.13 protein_coding - - chr3:146515180-146544856:- chr3:146525647:- chr3:146232967-146262643:- chr3:146243434:- chr3:140945056 chr3:146531658 NA NA chr3:140663898 chr3:146249445 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Mito_carr-PARTIAL|5-41~|1.1e-29 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:5.54Mb] 15 37 15 4.7 ONLY_REF_SPLICE YES_LDAS 0.2411 GT 1.7819 AG 1.8892 ENST00000507429.5 1-41 ENST00000342435.9 313-957 chr3|+|[0]140942055-140942095[1]<==>chr3|-|[2]146516045-146516101[0]|[2]146517006-146517167[0]|[2]146521544-146521705[0]|[2]146521833-146522053[1]|[0]146525605-146525647[0] atgagccagagggacacgctggtgcatctgtttgccggaggATAGATCAGATACTGATTCATCAGCAAATTGAACTTCTGGAAGTTTTAACAGGTTTTGAAACTAATAACAAATATGAAATTAAGAACAGCTTTGGACAGAGGGTTTACTTTGCAGCGGAAGATACTGATTGCTGTACCCGAAATTGCTGTGGGCCATCTAGACCTTTTACCTTGAGGATTATTGATAATATGGGTCAAGAAGTCATAACTCTGGAGAGACCACTAAGATGTAGCAGCTGTTGTTGTCCCTGCTGCCTTCAGGAGATAGAAATCCAAGCTCCTCCTGGTGTACCAATAGGTTATGTTATTCAGACTTGGCACCCATGTCTACCAAAGTTTACAATTCAAAATGAGAAAAGAGAGGATGTACTAAAAATAAGTGGTCCATGTGTTGTGTGCAGCTGTTGTGGAGATGTTGATTTTGAGATTAAATCTCTTGATGAACAGTGTGTGGTTGGCAAAATTTCCAAGCACTGGACTGGAATTTTGAGAGAGGCATTTACAGACGCTGATAACTTTGGAATCCAGTTCCCTTTAGACCTTGATGTTAAAATGAAAGCTGTAATGATTGGTGCCTGTTTCCTCATTGACTTCATGTTTTTTGAAAGCACTGGCAGCCAGGAACAAAAATCAGGAGTGTGGTAG MSQRDTLVHLFAGG*IRY*FISKLNFWKF*QVLKLITNMKLRTALDRGFTLQRKILIAVPEIAVGHLDLLP*GLLIIWVKKS*LWRDH*DVAAVVVPAAFRR*KSKLLLVYQ*VMLFRLGTHVYQSLQFKMRKERMY*K*VVHVLCAAVVEMLILRLNLLMNSVWLAKFPSTGLEF*ERHLQTLITLESSSL*TLMLK*KL**LVPVSSLTSCFLKALAARNKNQECG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33382 NBAS::ENSG00000224194 ENSG00000151779.14::ENSG00000224194.1 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15356303:- chr2:15307040-15701464:- chr2:15496427:- ENSG00000224194 ENSG00000224194.1 lncRNA - - chr2:15668684-15680484:- chr2:15668944:- chr2:15808808-15820608:- chr2:15809068:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 15 14 15 ONLY_REF_SPLICE YES_LDAS 0.355 GT 1.9329 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33386 SIL1::DNAJC18 ENSG00000120725.13::ENSG00000170464.10 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SIL1 ENSG00000120725.13 protein_coding - - chr5:138946724-139293557:- chr5:139050938:- chr5:138282413-138629246:- chr5:138386627:- DNAJC18 ENSG00000170464.10 protein_coding - - chr5:139408588-139444491:- chr5:139439492:- chr5:138744277-138780180:- chr5:138775181:- chr5:139044032,chr5:139044032,chr5:139044040 chr5:139440687,chr5:139440685,chr5:139440692 NA NA chr5:138379721,chr5:138379721,chr5:138379729 chr5:138776376,chr5:138776374,chr5:138776381 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.12Mb] 11 8 11 8 ONLY_REF_SPLICE YES_LDAS 0.2325 GT 1.7465 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus,Nasopharynx no_match TRUE Head and Neck squamous cell carcinoma,Uterine Corpus Endometrial Carcinoma HEAD_AND_NECK,UTERUS no_match 138456724,138533958 FALSE,FALSE 138749961,138760803 FALSE,FALSE YES,PARTIALLY In-frame,5UTR-CDS FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33388 NBAS::GACAT3 ENSG00000151779.14::ENSG00000236289.4 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA TRUE 4319 TRUE 1640 NBAS ENSG00000151779.14 protein_coding - - chr2:15166916-15561340:- chr2:15488894:- chr2:15307040-15701464:- chr2:15629018:- GACAT3 ENSG00000236289.4 lncRNA + + chr2:16013928-16087201:+ chr2:16080898:+ chr2:16154050-16227323:+ chr2:16221020:+ chr2:15401143 chr2:16048959 NA NA chr2:15541267 chr2:16189081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.49Mb] 9 21 9 3.07 ONLY_REF_SPLICE YES_LDAS 0.1478 GT 1.8323 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33390 XXYLT1::MED12L ENSG00000173950.16::ENSG00000144893.13 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2363 FALSE NA FALSE NA XXYLT1 ENSG00000173950.16 protein_coding - - chr3:195068284-195271159:- chr3:195156449:- chr3:194789013-194991888:- chr3:194877178:- MED12L ENSG00000144893.13 protein_coding + + chr3:151085286-151437072:+ chr3:151355121:+ chr3:150803073-151154860:+ chr3:151072909:+ chr3:195119090 chr3:151352906 NA NA chr3:194839819 chr3:151070694 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Glyco_transf_8|200-355|2e-10 none ["XXYLT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:43.63Mb] 9 5 9 5 ONLY_REF_SPLICE YES_LDAS 0.1714 GT 1.9899 AG 1.7968 ENST00000310380.11 1-785 ENST00000474524.5 2294-6438 chr3|-|[1]195156449-195156581[1]|[0]195226709-195226856[0]|[2]195270555-195271058[0]<==>chr3|+|[1]151355121-151355239[2]|[0]151355896-151356039[2]|[0]151357213-151357376[1]|[2]151360474-151360605[1]|[2]151364979-151365206[1]|[2]151365850-151365991[2]|[0]151367646-151367766[0]|[1]151368150-151368251[0]|[1]151369436-151369549[0]|[1]151372567-151372766[2]|[0]151376026-151376214[2]|[0]151376800-151376874[2]|[0]151376991-151377178[1]|[2]151378012-151378173[1]|[2]151380113-151380224[2]|[0]151382656-151382745[2]|[0]151383779-151383888[1]|[2]151384083-151384218[2]|[0]151385030-151385191[2]|[0]151387810-151388172[2]|[0]151389979-151390135[0]|[1]151394656-151394867[2]|[0]151409243-151409332[2]|[0]151411278-151411507[1]|[2]151413139-151413295[2]|[0]151416312-151416422[2]|[0]151430299-151430380[0]|[1]151432752-151432804[2] atgggcctcctccgaggcgggctcccatgcgctcgggccatggcgcgcctgggcgctgtgcgctcccactactgcgccctgctgctggccgcggcgctggccgtctgcgccttctactacctcggctcaggccgggagaccttctccagcgccaccaagaggctgaaggaggcccgcgccggggctcccgccgcgccctcgccgcccgcgctggagctagcgcggggctccgtggcgccagcccccggcgcgaaggccaagagcttggagggcggcggtgccgggccggtggactaccacctgctgatgatgttcaccaaggcggagcacaatgccgcgctgcaggccaaggcccgcgtcgcgctgcgctcactgctgcgcctcgccaagttcgaggcgcacgaggtgcttaaccttcacttcgtgagcgaggaggccagccgcgaggtggccaagggcctgctgcgggagctcctgccgcccgccgctggcttcaagtgcaaggtcatcttccacgatgttgctgtgctgacggataagctcttccccatcgtggaggccatgcagaagcacttcagtgctggcttgggaacctactacagtgactccatcttcttcctctcggtcgccatgcatcagatcatgcccaaagagatcctgcagatcattcagctggacctagacctgaagtttaagaccaacatccgggagttgtttgaggaatttgacagtttcctgccaggcgccatcatcggcatagcccgggagatgcagccagtttacagTTGGGGACGAAGGACAAAAAGCCAGGAAGAACAAACAGGAGACATTTCCAACACTGGAGACTGTGTTCACTAAACTCCAGCTCCTTTCATATTTTGATCAACATCAAGTGACATCTCAGATTTCTAACAATGTGCTAGAACAAATCACAAGCTTTGCGTCAGGAACATCCTATCATCTCCCTTTGGCTCACCACATTCAGCTCATCTTTGATCTCATGGAGCCAGCACTGAACATCAACGGACTAATTGACTTCGCAATACAGTTACTAAATGAACTGAGTGTTGTGGAAGCTGAACTGCTCCTAAAATCCTCCAGCCTGGCAGGAAGTTATACAACAGGACTGTGTGTCTGCATCGTGGCTGTTCTCAGGCGCTATCACAGTTGTCTAATCTTGAATCCTGATCAGACAGCCCAGGTGTTTGAAGGGTTGTGTGGTGTGGTCAAGCATGTCGTAAACCCCTCAGAATGTTCTTCCCCTGAAAGATGCATTTTAGCCTACCTCTATGATCTCTATGTGTCATGTAGCCACCTCAGAAGTAAATTTGGAGACCTCTTCAGTAGTGCCTGTTCAAAAGTAAAGCAAACCATATATAATAACGTGATGCCTGCAAATTCGAACTTGCGATGGGATCCAGACTTCATGATGGATTTTATTGAGAATCCCTCAGCCCGCAGCATCAACTACTCAATGCTGGGCAAGATCCTCAGTGACAATGCGGCCAATCGCTACAGCTTTGTCTGCAATACACTCATGAATGTATGTATGGGCCATCAGGATGCTGGCAGGATTAACGACATAGCCAATTTCTCCTCTGAGCTTACGGCTTGCTGCACTGTTCTTAGTTCAGAATGGCTGGGGGTTCTGAAGGCTCTTTGTTGTTCTTCAAATCACGTGTGGGGGTTTAATGATGTACTTTGCACTGTAGATGTGAGTGACCTTTCATTCCATGATTCATTAGCTACTTTCATTGCTATTCTGATAGCACGACAGTGTTTTTCCCTGGAGGACGTCGTGCAGCATGTCGCACTTCCCTCTCTTCTAGCAGCAGCTTGTGGGGATGCGGACGCCGAGCCTGGGGCGAGAATGACATGCCGACTCTTGCTTCATCTCTTCCGAGCTCCCCAGGCCTGCTTCTTACCTCAAGCAACGGGCAAACCTTTCCCTGGAATAAGATCATCTTGTGATAGACACCTCTTAGCCGCTGCTCACAACAGCATTGAAGTGGGAGCCGTGTTTGCTGTCTTAAAAGCAATTATGATGCTTGGAGATGCCAAAATTGGCAATAACAGTGTCAGCTCTTTAAAGAATGATGACTTCACCATGAGAGGTTTGCGATGTGATGGGAATGCTGATGATATCTGGACTGCCTCACAAAATCCAAAATCCTGTGGGAAAAGCATTTCCATAGAAACTGCCAATTTAAGAGAATACGCTAGATATGTACTGAGGACTATCTGTCAACAGGAATGGGTAGGAGAGCATTGCTTAAAAGAACCTGAAAGATTATGTACAGACAAAGAACTTATATTGGACCCTGTGCTTTCAAATATGCAAGCACAGAAATTACTGCAGCTTATCTGTTATCCTCATGGCATTAAAGAATGTACCGAGGGGGACAATCTGCAAAGACAGCACATTAAGCGTATTCTTCAGAATCTTGAGCAGTGGACACTGAGGCAATCCTGGTTAGAACTCCAGCTAATGATCAAACAGTGCTTGAAGGACCCTGGCTCTGGTTCTGTGGCCGAAATGAACAACTTACTGGACAATATTGCAAAGGCAACAATAGAGGTATTCCAGCAGTCTGCAGACCTAAATAATTCTTCTAATTCTGGCATGAGCCTCTTCAACCCAAACAGTATTGGAAGTGCTGATACAAGTAGCACGAGACAGAATGGAATAAAGACATTCCTAAGTTCCTCCGAACGCAGGGGTGTATGGTTGGTGGCCCCCCTCATCGCCAGGTTGCCAACTTCTGTGCAAGGAAGAGTGCTGAAAGCCGCTGGGGAAGAGCTGGAGAAGGGACAGCACTTGGGTTCTTCTTCCAAAAAGGAAAGGGACAGACAGAAACAGAAAAGTATGTCTCTTTTGAGTCAACAACCCTTCCTCTCACTGGTACTTACCTGCCTTAAGGGACAAGATGAACAAAGGGAAGGCCTCCTAACATCTCTCCAGAATCAAGTTAACCAGATTTTAAGTAACTGGAGAGAAGAACGATACCAAGATGACATAAAAGCGCGGCAGATGATGCACGAAGCATTGCAACTCCGCCTAAATTTGGTAGGAGGAATGTTTGACACGGTGCAGAGGAGCACCCAGTGGACTACAGACTGGGCCCTGCTACTCCTTCAGATCATTACTTCAGGAACTGTTGACATGCACACTAACAATGAATTATTCACAACAGTTCTTGACATGCTGGGTGTTTTAATCAATGGAACGTTAGCCTCTGACCTATCAAATGCATCCCCTGGGGGATCTGAAGAGAACAAGCGTGCATACATGAATTTAGTAAAGAAACTGAAAAAAGAGCTAGGAGACAAGCGATCAGAAAGTATTGACAAAGTTCGACAGTTACTACCTTTGCCGAAACAGACATGTGATGTCATCACTTGTGAACCTATGGGTTCCTTGATTGACACAAAAGGAAACAAAATTGCTGGATTTGACTCTATAGATAAAAAACAGGGTCTCCAGGTCTCTACGAAGCAGAAGGTGTCCCCGTGGGACTTGTTTGAGGGTCAGAAGAACCCAGCTCCTTTGTCCTGGGCCTGGTTTGGGACAGTCCGAGTGGACCGAAGAGTGATCAAGTACGAGGAGCAGCATCACCTCCTGCTGTATCACACACACCCCATGCCCAAGCCCCGCAGTTACTACCTCCAGCCACTGCCCCTGCCTCCTGAGGAGGAAGAGGAAGAGCCCACATCTCCAGTTTCTCAGGAACCAGAAAGGAAGTCCGCTGAGCTGTCAGATCAGGGAAAAACCACAACAGATGAAGAAAAGAAAACAAAAGGAAGGAAGCGCAAGACGAAATCTAGCTCAAGAGTTGATGAATATCCACAGAGCAACATATACCGAGTGCCTCCTAATTACTCGCCTATCTCCTCCCAAATGATGCACCATCCACAGTCCACCTTGTGGGGTTACAACCTCGTGGGCCAGCCCCAGCAGCCCGGCTTTTTCCTTCAGAACCAATCTCTTACTCCAGGTGGCTCCAGATTGGACCCTGCAGGCTCCTTTGTCCCAACCAACACCAAACAAGCTCTGTCAAACATGCTACAGCGGCGCTCAGGCGCCATGATGCAGCCGCCTTCTCTTCATGCAATCACATCGCAGCAGCAGTTGATACAGATGAAGCTTCTGCAGCAGCAGCAGCAACAGCGACTTCTCAGGCAAGCCCAGACTCGGCCTTTCCAACAGGGCCAGCCGGGGGACCAGGCTGCTCTCTTTGCTGCGCAAGCACGGCCCTCCCCTCAGCTCCCTCAGTATCCAGGGCTGCAGCAAGCACAGACCATGCCACAGGGCTATACAATGTATGGGACACAGATGCCTTTGCAGCAGACATCGCAGCAGCAGGCTGGCAGTGTGGTCCTGTCTCCCAGCTATAACTCCAGAGCCTATCCGGCCGCACATTCCAACCCCGTGCTAATGGAAAGACTCAGACAGATTCAGCAGCAGCCGAGTGGCTATGTTCAGCAGCAGGCCTCGCCGTACCTGCAGCCCCTGACTGGCTCTCAGAGACTGAACCATCAGGCTCTACAGCAGAGCCCTCTGGTGGGCGGGGGAATTGATGCTGTGCTGACTTCTGCACATCCAAACCTTCCCTCCGTGCCCCTGCCTCAGGATCCCATGAGACCCAGACAGCCGCAAGTTCGACAGCAGCAGAGACTCCTCCAGATGCAGCAGCCCCAGCAGCCCCAGCCCCAGCAGCCTCCCCAGCCCCAGCAGTCCTCGCAGTCCCAGAGTCAGACCCTTGGTCTCCAAGCAATGCAGCCCCAGCAGCCCTTGTTTCCCAGGCAAGGCTTGCAGCAGACCCAGCAGCAGCAGCAGACGGCCGCCTTGGTGCGGCAGCTCCAGAAGCAGCTTTCCAGCAACCAGCCACAGCAAGGAGTGACTCCGTATGGGCATCCTTCACACTTCTGA MGLLRGGLPCARAMARLGAVRSHYCALLLAAALAVCAFYYLGSGRETFSSATKRLKEARAGAPAAPSPPALELARGSVAPAPGAKAKSLEGGGAGPVDYHLLMMFTKAEHNAALQAKARVALRSLLRLAKFEAHEVLNLHFVSEEASREVAKGLLRELLPPAAGFKCKVIFHDVAVLTDKLFPIVEAMQKHFSAGLGTYYSDSIFFLSVAMHQIMPKEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYSWGRRTKSQEEQTGDISNTGDCVH*TPAPFIF*STSSDISDF*QCARTNHKLCVRNILSSPFGSPHSAHL*SHGASTEHQRTN*LRNTVTK*TECCGS*TAPKILQPGRKLYNRTVCLHRGCSQALSQLSNLES*SDSPGV*RVVWCGQACRKPLRMFFP*KMHFSLPL*SLCVM*PPQK*IWRPLQ*CLFKSKANHI**RDACKFELAMGSRLHDGFY*ESLSPQHQLLNAGQDPQ*QCGQSLQLCLQYTHECMYGPSGCWQD*RHSQFLL*AYGLLHCS*FRMAGGSEGSLLFFKSRVGV**CTLHCRCE*PFIP*FISYFHCYSDSTTVFFPGGRRAACRTSLSSSSSLWGCGRRAWGENDMPTLASSLPSSPGLLLTSSNGQTFPWNKIIL**TPLSRCSQQH*SGSRVCCLKSNYDAWRCQNWQ*QCQLFKE**LHHERFAM*WEC**YLDCLTKSKILWEKHFHRNCQFKRIR*ICTEDYLSTGMGRRALLKRT*KIMYRQRTYIGPCAFKYASTEITAAYLLSSWH*RMYRGGQSAKTAH*AYSSES*AVDTEAILVRTPANDQTVLEGPWLWFCGRNEQLTGQYCKGNNRGIPAVCRPK*FF*FWHEPLQPKQYWKC*YK*HETEWNKDIPKFLRTQGCMVGGPPHRQVANFCARKSAESRWGRAGEGTALGFFFQKGKGQTETEKYVSFESTTLPLTGTYLP*GTR*TKGRPPNISPESS*PDFK*LERRTIPR*HKSAADDARSIATPPKFGRRNV*HGAEEHPVDYRLGPATPSDHYFRNC*HAH*Q*IIHNSS*HAGCFNQWNVSL*PIKCIPWGI*REQACIHEFSKETEKRARRQAIRKY*QSSTVTTFAETDM*CHHL*TYGFLD*HKRKQNCWI*LYR*KTGSPGLYEAEGVPVGLV*GSEEPSSFVLGLVWDSPSGPKSDQVRGAASPPAVSHTPHAQAPQLLPPATAPAS*GGRGRAHISSFSGTRKEVR*AVRSGKNHNR*RKENKRKEAQDEI*LKS**ISTEQHIPSAS*LLAYLLPNDAPSTVHLVGLQPRGPAPAARLFPSEPISYSRWLQIGPCRLLCPNQHQTSSVKHATAALRRHDAAAFSSCNHIAAAVDTDEASAAAAATATSQASPDSAFPTGPAGGPGCSLCCASTALPSAPSVSRAAASTDHATGLYNVWDTDAFAADIAAAGWQCGPVSQL*LQSLSGRTFQPRANGKTQTDSAAAEWLCSAAGLAVPAAPDWLSETEPSGSTAEPSGGRGN*CCADFCTSKPSLRAPASGSHETQTAASSTAAETPPDAAAPAAPAPAASPAPAVLAVPESDPWSPSNAAPAALVSQARLAADPAAAADGRLGAAAPEAAFQQPATARSDSVWASFTLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33405 IFT122::EPHB1 ENSG00000163913.14::ENSG00000154928.19 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2366 FALSE NA FALSE NA IFT122 ENSG00000163913.14 protein_coding + + chr3:129429607-129520510:+ chr3:129507762:+ chr3:129148450-129239353:+ chr3:129226605:+ EPHB1 ENSG00000154928.19 protein_coding + + chr3:134795260-135260467:+ chr3:135106448:+ chr3:134514102-134979309:+ chr3:134825290:+ chr3:129509673,chr3:129509672 chr3:135068224,chr3:135068220 NA NA chr3:129228516,chr3:129228515 chr3:134787066,chr3:134787062 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ANAPC4_WD40|8-63|0.00011^WD40|13-33|0.0071^Coatomer_WDAD|15-85|0.82^NBCH_WD40|39-81|1.8e-09^WD40|44-80|6.6e-12^ANAPC4_WD40|51-82|0.042^Coatomer_WDAD|141-220|0.0015^WD40|142-164|0.0053^WD40|175-209|0.00061^NBCH_WD40|176-207|1.1^ANAPC4_WD40|178-215|7.6e-05^WD40|228-241|0.027^ANAPC4_WD40|301-358|0.2^WD40|335-358|0.35^WD40_like|339-403|0.0032^ANAPC4_WD40|344-400|0.012^NBCH_WD40|360-438|0.13^WD40|366-399|2.8e-06^Coatomer_WDAD|403-467|0.023^WD40_like|432-513|0.18^TPR_10|516-531|6.4^WD40_like|538-629|0.034^ANAPC4_WD40|563-606|0.004^WD40|566-593|0.073^Coatomer_WDAD|574-602|0.42^Coatomer_WDAD|682-736|3.7e-05^TPR_7|746-766|0.00012^TPR_14|746-766|0.069^TPR_12|747-767|0.0028^TPR_10|747-766|0.016^TPR_19|754-766|1.5^Clathrin|770-855|0.0033^TPR_19|791-835|0.72^TPR_14|817-834|5.5^TPR_7|820-835|1.5^Coatomer_WDAD|874-946|0.47^TPR_7|876-894|0.11^Clathrin|885-942|0.12^TPR_14|886-904|0.7^TPR_19|888-901|0.54^TPR_10|888-907|0.49^TPR_12|890-906|0.58^TPR_19|896-942|0.0071^TPR_14|917-942|0.013^TPR_12|919-939|0.036^TPR_10|920-939|0.46^Clathrin|929-956|0.14^TPR_7|935-951|0.28^TPR_19|937-960|0.5^TPR_14|1050-1073|3.1^TPR_7|1118-1129|7.2^TPR_10|1118-1128|2.4 PK_Tyr_Ser-Thr-PARTIAL|~806-878|8.7e-105^Pkinase-PARTIAL|~806-876|1.4e-52^SAM_2|908-950|1.2e-09^SAM_1|911-949|4.1e-10 ["EPHB1:FoundationOne_panel","EPHB1:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:5.08Mb] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1102 GT 1.7968 AG 1.9086 ENST00000296266.7 1-3039 ENST00000647596.1 806-3168 chr3|+|[0]129440331-129440371[1]|[2]129449871-129449937[2]|[0]129451914-129451998[0]|[1]129458599-129458677[1]|[2]129460854-129461006[1]|[2]129461228-129461304[0]|[1]129463560-129463626[1]|[2]129464635-129464781[1]|[2]129466890-129467066[1]|[2]129469342-129469417[2]|[0]129476315-129476506[2]|[0]129476663-129476801[0]|[1]129478016-129478218[2]|[0]129479785-129479922[2]|[0]129481530-129481694[2]|[0]129483485-129483682[2]|[0]129488257-129488397[2]|[0]129492141-129492194[2]|[0]129495446-129495607[2]|[0]129499902-129500068[1]|[2]129502711-129502882[2]|[0]129504319-129504421[0]|[1]129506409-129506549[0]|[1]129507668-129507762[2]<==>chr3|+|[1]135106448-135106603[0]|[1]135132714-135133049[0]|[1]135154152-135154276[2]|[0]135162018-135162180[0]|[1]135165968-135166076[1]|[2]135166942-135167006[0]|[1]135179860-135179982[0]|[1]135192576-135192823[2]|[0]135201474-135201689[2]|[0]135241148-135241297[2]|[0]135248316-135248509[1]|[2]135249336-135249491[1]|[2]135259029-135259350[2] atgagggccgtgttgacgtggagagataaagccgagcactgtataaatgacatcgcatttaagcctgatggaactcaactgattttggctgccggaagcagattactggtttatgacacctctgatggcaccttacttcagcccctcaagggacacaaagacactgtgtactgtgtggcatatgcgaaggatggcaagcgctttgcttctggatcagctgacaaaagcgttattatctggacatcaaaactggaaggcattctgaagtacacatcttggtctgtgatgtcttcattgcacctccatcttccatttctgggcctccacaaaacagtaagagtaacagccacagataaagcacctaaaggccaaggtgggaggattgattgcttgaggccaagcgttcaaaaccaacctggccaaaagcacaatgatgctatacaatgtgtctcctacaatcctattactcatcaactggcatcttgttcctccagtgactttgggttgtggtctcctgaacagaagtctgtctccaaacacaaatcaagcagcaagatcatctgctgcagctggacaaatgatggtcagtacctggcgctggggatgttcaatgggatcatcagcatacggaacaaaaatggcgaggagaaagtaaagatcgagcggccggggggctccctctcgccaatatggtccatctgctggaacccttcaagccgatgggagagtttctggatgaacagagagaatgaggatgccgaggatgtcattgtcaacagatatattcaggaaatcccttccactctgaagtcagcagtgtacagtagtcagggtagtgaggcagaggaggaagaaccagaggaagaggacgacagtcccagggacgacaacttagaggaacgtaatgacatcctggctgtggctgactggggacagaaagtttccttctaccagctgagtggaaaacagattggaaaggatcgggcactgaactttgacccctgctgcatcagctactttactaaaggcgagtacattttgctggggggttcagacaagcaagtatctcttttcaccaaggatggagtgcggcttgggactgttggggagcagaactcctgggtgtggacgtgtcaagcgaaaccggattccaactatgtggtggtcggctgccaggacggcaccatttccttctaccagcttattttcagcacagtccatgggctttacaaggaccgctatgcctacagggatagcatgactgacgtcattgtgcagcacctgatcactgagcagaaagttcggattaaatgcaaagagcttgtcaagaagattgccatctacagaaatcgattggctatccaactgccagagaaaatcctcatctatgagttgtattcagaggacttatcagacatgcattaccgggtaaaggagaagattatcaagaagtttgagtgcaacctcctggtggtgtgtgccaatcacatcatcctgtgccaggagaaacggctgcagtgcctgtccttcagcggagtgaaggagcgggagtggcagatggagtctctcattcgttacatcaaggtgatcggtggccctcctggaagagaaggcctcttagtggggctgaagaatggacagatcctgaagatcttcgtggacaatctctttgctatcgtcctgctgaagcaggccacagctgtgcgctgcttggacatgagtgcctcccgtaagaagctggccgtggtagatgaaaatgacacttgcctggtgtatgacatcgacaccaaggagctgctttttcaggaaccaaacgccaacagtgtagcttggaacacccagtgtgaggacatgctctgcttctcgggaggaggctacctcaacatcaaagccagcaccttccctgtgcaccggcagaagctgcagggctttgtggtcggctacaatggctccaagatcttctgcctccatgtcttctccatttctgccgtggaggtgccgcagtccgctcccatgtaccagtacctggataggaaactgttcaaggaagcctaccagattgcttgcttgggtgtcacagacactgattggcgtgaactggccatggaagcgctagaaggtttagattttgaaacagcaaagaaggccttcatcagagtacaagacctccgatatttagagctcatcagcagcattgaggagaggaagaagcggggagagaccaacaatgacctgtttctggcagatgtgttttcctaccaggggaagttccatgaggccgccaaactgtacaagaggagtgggcacgagaacctcgcgcttgaaatgtacaccgacctctgcatgtttgagtatgccaaggatttccttggatctggagaccccaaagaaacaaagatgctaatcaccaaacaggctgactgggccagaaatatcaaggagcccaaagccgccgtggagatgtacatctcagcaggagagcacgtcaaggccatcgagatctgtggtgaccatggctgggttgacatgttgatcgacatcgcccgcaaactggacaaggctgagcgcgagcccctgctgctgtgcgctacctacctcaagaagctggacagccctggctatgctgctgagacctacctgaagatgggtgacctcaagtccctggtgcagctgcacgtggagacccagcgctgggatgaggcctttgctttgggtgagaagcatcctgagtttaaggatgacatctacatgccgtatgctcagtggctagcagagaacgatcgctttgaggaagcccagaaagcgttccacaaggctgggcgacagagagaagcggtccaggtgctggagcagctcacaaacaatgccgtggcggagagcaggtttaatgatgctgcctattattactggatgctgtccatgcagtgcctcgatatagctcaagatcctgcccagaaggacacaatgcttggcaagttctaccacttccagcgtttggcagagctgtaccatggttaccatgccatccatcgccacacgCTTGCCCTGCAGGGACATTCAAGGCCAGCCAGGAAGCTGAAGGCTGCTCCCACTGCCCCTCCAACAGCCGCTCCCCTGCAGAGGCGTCTCCCATCTGCACCTGTCGGACCGGTTATTACCGAGCGGACTTTGACCCTCCAGAAGTGGCATGCACTAGCGTCCCATCAGGTCCCCGCAATGTTATCTCCATCGTCAATGAGACGTCCATCATTCTGGAGTGGCACCCTCCAAGGGAGACAGGTGGGCGGGATGATGTGACCTACAACATCATCTGCAAAAAGTGCCGGGCAGACCGCCGGAGCTGCTCCCGCTGTGACGACAATGTGGAGTTTGTGCCCAGGCAGCTGGGCCTGACGGAGTGCCGCGTCTCCATCAGCAGCCTGTGGGCCCACACCCCCTACACCTTTGACATCCAGGCCATCAATGGAGTCTCCAGCAAGAGTCCCTTCCCCCCACAGCACGTCTCTGTCAACATCACCACAAACCAAGCCGCCCCCTCCACCGTTCCCATCATGCACCAAGTCAGTGCCACTATGAGGAGCATCACCTTGTCATGGCCACAGCCGGAGCAGCCCAATGGCATCATCCTGGACTATGAGATCCGGTACTATGAGAAGGAACACAATGAGTTCAACTCCTCCATGGCCAGGAGTCAGACCAACACAGCAAGGATTGATGGGCTGCGGCCTGGCATGGTATATGTGGTACAGGTGCGTGCCCGCACTGTTGCTGGCTACGGCAAGTTCAGTGGCAAGATGTGCTTCCAGACTCTGACTGACGATGATTACAAGTCAGAGCTGAGGGAGCAGCTGCCCCTGATTGCTGGCTCGGCAGCGGCCGGGGTCGTGTTCGTTGTGTCCTTGGTGGCCATCTCTATCGTCTGTAGCAGGAAACGGGCTTATAGCAAAGAGGCTGTGTACAGCGATAAGCTCCAGCATTACAGCACAGGCCGAGGCTCCCCAGGGATGAAGATCTACATTGACCCCTTCACTTACGAGGATCCCAACGAAGCTGTCCGGGAGTTTGCCAAGGAGATTGATGTATCTTTTGTGAAAATTGAAGAGGTCATCGGAGCAGGGGAGTTTGGAGAAGTGTACAAGGGGCGTTTGAAACTGCCAGGCAAGAGGGAAATCTACGTGGCCATCAAGACCCTGAAGGCAGGGTACTCGGAGAAGCAGCGTCGGGACTTTCTGAGTGAGGCGAGCATCATGGGCCAGTTCGACCATCCTAACATCATTCGCCTGGAGGGTGTGGTCACCAAGAGTCGGCCTGTCATGATCATCACAGAGTTCATGGAGAATGGTGCATTGGATTCTTTCCTCAGGCAAAATGACGGGCAGTTCACCGTGATCCAGCTTGTGGGTATGCTCAGGGGCATCGCTGCTGGCATGAAGTACCTGGCTGAGATGAATTATGTGCATCGGGACCTGGCTGCTAGGAACATTCTGGTCAACAGTAACCTGGTGTGCAAGGTGTCCGACTTTGGCCTCTCCCGCTACCTCCAGGATGACACCTCAGATCCCACCTACACCAGCTCCTTGGGAGGGAAGATCCCTGTGAGATGGACAGCTCCAGAGGCCATCGCCTACCGCAAGTTCACTTCAGCCAGCGACGTTTGGAGCTATGGGATCGTCATGTGGGAAGTCATGTCATTTGGAGAGAGACCCTATTGGGATATGTCCAACCAAGATGTCATCAATGCCATCGAGCAGGACTACCGGCTGCCCCCACCCATGGACTGTCCAGCTGCTCTACACCAGCTCATGCTGGACTGTTGGCAGAAGGACCGGAACAGCCGGCCCCGGTTTGCGGAGATTGTCAACACCCTAGATAAGATGATCCGGAACCCGGCAAGTCTCAAGACTGTGGCAACCATCACCGCCGTGCCTTCCCAGCCCCTGCTCGACCGCTCCATCCCAGACTTCACGGCCTTTACCACCGTGGATGACTGGCTCAGCGCCATCAAAATGGTCCAGTACAGGGACAGCTTCCTCACTGCTGGCTTCACCTCCCTCCAGCTGGTCACCCAGATGACATCAGAGCATCACCTTGGCAGGCCATCAGAAGAAGATCCTGAACAGCATTCATTCTATGAGGGTCCAGATAAGTCAGTCACCAACGGCAATGGCATGAGAACTCTTGTTTCTTGGGGAAGGAGAGGAGGGAAAAGGACCAGGGTCAAGGGGGACCAGAGGTTGACCACTGTGGAATGTACTGGAGAGACTGGCTTCTCAGCTGAGGAATGCATTTCCATCAGTGAAGAATCAACCGGACCTGTTGCTAGCAGGCAATCTCCATTTCTCAGTGACAGAAGCATGTTTGAGATGCCGTGGGAAACCAAATATATAATAATAAAAATATAA MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTSWSVMSSLHLHLPFLGLHKTVRVTATDKAPKGQGGRIDCLRPSVQNQPGQKHNDAIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKIICCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWESFWMNRENEDAEDVIVNRYIQEIPSTLKSAVYSSQGSEAEEEEPEEEDDSPRDDNLEERNDILAVADWGQKVSFYQLSGKQIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKDGVRLGTVGEQNSWVWTCQAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKELVKKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQSAPMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFETAKKAFIRVQDLRYLELISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLCMFEYAKDFLGSGDPKETKMLITKQADWARNIKEPKAAVEMYISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGYAAETYLKMGDLKSLVQLHVETQRWDEAFALGEKHPEFKDDIYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQDPAQKDTMLGKFYHFQRLAELYHGYHAIHRHTLALQGHSRPARKLKAAPTAPPTAAPLQRRLPSAPVGPVITERTLTLQKWHALASHQVPAMLSPSSMRRPSFWSGTLQGRQVGGMM*PTTSSAKSAGQTAGAAPAVTTMWSLCPGSWA*RSAASPSAACGPTPPTPLTSRPSMESPARVPSPHSTSLSTSPQTKPPPPPFPSCTKSVPL*GASPCHGHSRSSPMASSWTMRSGTMRRNTMSSTPPWPGVRPTQQGLMGCGLAWYMWYRCVPALLLATASSVARCASRL*LTMITSQS*GSSCP*LLARQRPGSCSLCPWWPSLSSVAGNGLIAKRLCTAISSSITAQAEAPQG*RSTLTPSLTRIPTKLSGSLPRRLMYLL*KLKRSSEQGSLEKCTRGV*NCQARGKSTWPSRP*RQGTRRSSVGTF*VRRASWASSTILTSFAWRVWSPRVGLS*SSQSSWRMVHWILSSGKMTGSSP*SSLWVCSGASLLA*STWLR*IMCIGTWLLGTFWSTVTWCARCPTLASPATSRMTPQIPPTPAPWEGRSL*DGQLQRPSPTASSLQPATFGAMGSSCGKSCHLERDPIGICPTKMSSMPSSRTTGCPHPWTVQLLYTSSCWTVGRRTGTAGPGLRRLSTP*IR*SGTRQVSRLWQPSPPCLPSPCSTAPSQTSRPLPPWMTGSAPSKWSSTGTASSLLASPPSSWSPR*HQSITLAGHQKKILNSIHSMRVQISQSPTAMA*ELLFLGEGEEGKGPGSRGTRG*PLWNVLERLASQLRNAFPSVKNQPDLLLAGNLHFSVTEACLRCRGKPNI***KY FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FALSE Ephrin type-B receptor 1 TK Eph P54762 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33406 CLEC16A::ATF7IP2 ENSG00000038532.17::ENSG00000166669.14 NCIH526 SRR8616161 SRR8670693 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2365 FALSE NA FALSE NA CLEC16A ENSG00000038532.17 protein_coding + + chr16:10944539-11182186:+ chr16:11061022:+ chr16:11038396-11276043:+ chr16:11154879:+ ATF7IP2 ENSG00000166669.14 protein_coding + + chr16:10326434-10483638:+ chr16:10473479:+ chr16:10420291-10577495:+ chr16:10567336:+ chr16:11107245,chr16:11107242,chr16:11107246,chr16:11107238 chr16:10455630,chr16:10455624,chr16:10455629,chr16:10455624 NA NA chr16:11201102,chr16:11201099,chr16:11201103,chr16:11201095 chr16:10549487,chr16:10549481,chr16:10549486,chr16:10549481 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Flu_NS2|35-59|2.2^DUF6136|45-159|4.1e-05^FPL|51-198|2.7e-60^Flu_NS2|103-154|1.4e-05^CLEC16A_C|245-1021|0^Flu_NS2|526-567|0.044 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.46Mb] 4 5 4 5 ONLY_REF_SPLICE YES_LDAS 0.1102 GT 1.9656 AG 1.5546 ENST00000409790.6 1-2116 ENST00000356427.2 1427-2049 chr16|+|[0]10944718-10944797[1]|[2]10957782-10957910[1]|[2]10962455-10962588[0]|[1]10969161-10969309[2]|[0]10971125-10971230[0]|[1]10972554-10972559[0]|[1]10972938-10973061[1]|[2]10977225-10977399[2]|[0]10979329-10979382[2]|[0]10982878-10982991[2]|[0]11003074-11003305[0]|[1]11020193-11020325[1]|[2]11024821-11024921[0]|[1]11039754-11039876[0]|[1]11042254-11042363[2]|[0]11044028-11044072[2]|[0]11047292-11047342[2]|[0]11051513-11051641[2]|[0]11060902-11061022[0]<==>chr16|+|[1]10473479-10473534[2]|[0]10473923-10473989[0]|[1]10480879-10480964[2]|[0]10481836-10482249[2] atgtttggccgctcgcggagctgggtgggcgggggccatggcaagacttcccgcaacatccactccttggaccacctcaagtatctgtaccacgttttgaccaaaaacaccacagtcacagaacagaaccggaacctgctagtggagaccatccgttccatcactgagatcctgatctggggagatcaaaatgacagctctgtatttgacttcttcctggagaagaatatgtttgttttcttcttgaacatcttgcggcaaaagtcgggccgttacgtgtgcgttcagctgctgcagaccttgaacatcctctttgagaacatcagtcacgagacctcactttattatttgctctcaaataactacgtaaattctatcatcgttcataaatttgacttttctgatgaggagattatggcctattatatatcgttcctgaaaacactttcgttaaaactcaacaaccacactgtccatttcttttataatgagcacaccaatgactttgccctgtacacagaagccatcaagtttttcaaccaccctgaaagcatggttagaattgctgtaagaaccataactttgaatgtctataaagtgtcattggataaccaggccatgctgcactacatccgagataaaactgctgttccttacttctccaatttggtctggttcattgggagccatgtgatcgaactcgatgactgcgtgcagactgatgaggagcatcggaatcggggtaaactgagtgatctggtggcagagcacctagaccacctgcactatctcaatgacatcctgatcatcaactgtgagttcctcaacgatgtgctcactgaccacctgctcaacaggctcttcctgcccctctacgtgtactcactggagaaccaggacaagggaggagaacggccgaaaattagcctgccggtgtctctttatcttctgtcacaggtcttcttaattatacatcatgcaccgctggtgaactcgttagctgaagtcattctgaatggtgatctgtctgagatgtacgctaagactgaacaggatattcagagaagttctgccaagcccagcattcggtgcttcattaaacccaccgagacactcgagcggtcccttgagatgaacaagcacaagggcaagaggcgggtgcaaaagagacccaactacaaaaacgttggggaagaagaagatgaggagaaagggcccaccgaggatgcccaagaagacgccgagaaggctaaaggtacagagggtggttcaaaaggcatcaagacgagtggggagagtgaagagatcgagatggtgatcatggagcgtagcaagctctcagagctggccgccagcacctccgtgcaggagcagaacaccacggacgaggagaaaagcgccgccgccacctgctctgagagcacgcaatggagcagacccttcctggatatggtgtaccacgcgctggacagcccggatgatgattaccatgccctgttcgtgctctgcctcctctatgccatgtctcataataaaggcatggatcctgaaaaattagagcgaatccagctccccgtgccaaatgcggccgagaagaccacctacaaccacccgctagctgaaagactcatcaggatcatgaacaacgctgcccagccagatgggaagatccggctggcgacgctggagctgagctgcctgcttctgaagcagcaagtcctgatgagtgctggctgcatcatgaaggacgtgcacctggcctgcctggagggtgcgagagaagaaagtgttcaccttgtacgacatttttataagggagaagacatttttttggacatgtttgaagatgagtataggagcatgacaatgaagcccatgaacgtggaatatctcatgatggacgcctccatcctgctgcccccaacaggcacgccactgacgggcattgacttcgtgaagcggctgccgtgtggcgatgtggagaagacccggcgggccatccgggtgttcttcatgctgcgttccctgtcactgcaattgcgaggggagcctgagacacagttgccgctgactcgggaggaggacctgatcaagactgatgatgtcctggatctgaATACCAGAAAAATTACATCAGGAAATTCTAGCAATTCTCCCAATGCTGAAGTTATGGCTGTACAGAAGAAACTTGATTCTATAATTGATTTGACAAAAGAAGGCCTATCCAACTGCAATACAGAAAGTCCAGTATCCCCCCTGGAGTCACATTCGAAAGCTGCTTCAAACTCAAAGGAAACAACCCCATTGGCACAAAATGCAGTCCAGGTTCCTGAGTCCTTTGAGCACCTGCCACCTCTCCCAGAACCACCAGCACCACTACCTGAATTAGTAGACAAAACCCGAGACACACTTCCTCCCCAGAAGCCTGAGCTCAAAGTGAAACGGGTTTTCAGACCCAATGGCATTGCCCTGACTTGGAATATAACCAAAATCAATCCCAAGTGTGCTCCTGTAGAAAGCTACCACCTCTTCCTGTGTCATGAGAACTCTAATAATAAGTTGATTTGGAAGAAGATTGGAGAAATTAAAGCTTTACCACTCCCCATGGCCTGTACTTTATCTCAGTTTTTAGCTTCCAACAGATACTATTTTACTGTCCAATCAAAAGATATTTTTGGACGATATGGACCATTCTGTGATATAAAATCTATCCCTGGGTTTTCTGAAAATCTTACGTAA MFGRSRSWVGGGHGKTSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVSLDNQAMLHYIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDVLTDHLLNRLFLPLYVYSLENQDKGGERPKISLPVSLYLLSQVFLIIHHAPLVNSLAEVILNGDLSEMYAKTEQDIQRSSAKPSIRCFIKPTETLERSLEMNKHKGKRRVQKRPNYKNVGEEEDEEKGPTEDAQEDAEKAKGTEGGSKGIKTSGESEEIEMVIMERSKLSELAASTSVQEQNTTDEEKSAAATCSESTQWSRPFLDMVYHALDSPDDDYHALFVLCLLYAMSHNKGMDPEKLERIQLPVPNAAEKTTYNHPLAERLIRIMNNAAQPDGKIRLATLELSCLLLKQQVLMSAGCIMKDVHLACLEGAREESVHLVRHFYKGEDIFLDMFEDEYRSMTMKPMNVEYLMMDASILLPPTGTPLTGIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTDDVLDLNTRKITSGNSSNSPNAEVMAVQKKLDSIIDLTKEGLSNCNTESPVSPLESHSKAASNSKETTPLAQNAVQVPESFEHLPPLPEPPAPLPELVDKTRDTLPPQKPELKVKRVFRPNGIALTWNITKINPKCAPVESYHLFLCHENSNNKLIWKKIGEIKALPLPMACTLSQFLASNRYYFTVQSKDIFGRYGPFCDIKSIPGFSENLT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Stomach no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33411 STAU1::TYW1 ENSG00000124214.21::ENSG00000198874.14 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary star-fusion TRUE TRUE TRUE 2371 FALSE NA FALSE NA STAU1 ENSG00000124214.21 protein_coding - - chr20:49113339-49188367:- chr20:49188116:- chr20:47729876-47804904:- chr20:47804653:- TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67183126:+ chr7:66460160-66704501:+ chr7:66648113:+ chr20:49186376,chr20:49186380 chr7:67144712,chr7:67144708 NA NA chr20:47802913,chr20:47802917 chr7:66609699,chr7:66609695 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr7] 87 25 87 25 ONLY_REF_SPLICE YES_LDAS 1.0515 GT 1.5656 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33412 RCOR1::PPM1E ENSG00000089902.10::ENSG00000175175.6 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary star-fusion TRUE TRUE TRUE 2370 FALSE NA FALSE NA RCOR1 ENSG00000089902.10 protein_coding + + chr14:102592649-102730561:+ chr14:102701330:+ chr14:103058986-103196898:+ chr14:103167667:+ PPM1E ENSG00000175175.6 protein_coding + + chr17:58755854-58985179:+ chr17:58972132:+ chr17:56833215-57062540:+ chr17:57049493:+ chr14:102707329,chr14:102707329 chr17:58971682,chr17:58971679 NA NA chr14:103173666,chr14:103173666 chr17:57049043,chr17:57049040 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ELM2|105-158|2.7e-19^Myb_DNA-bind_7|193-266|0.00011^Myb_DNA-binding|194-237|4.5e-10^Myb_DNA-bind_6|195-266|0.00017^Myb_DNA-binding_7|211-225|0.36^Myb_DNA-bind_7|251-282|0.71^ELM2|256-263|7^REST_helical|311-374|1.5e-32^Myb_DNA-bind_7|383-429|8e-08^Myb_DNA-binding|385-428|9.2e-15^Myb_DNA-bind_6|386-426|6.2e-06^ELM2|402-407|7^Myb_DNA-binding_7|404-424|0.0005^Homeobox_KN|416-430|8.1e-05 none ["PPM1E:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr14--chr17] 83 38 83 38 ONLY_REF_SPLICE YES_LDAS 1.1361 GT 1.8295 AG 1.8062 ENST00000262241.7 1-498 ENST00000308249.4 973-2268 chr14|+|[0]102592887-102593187[0]|[1]102593266-102593325[0]|[1]102681895-102681978[0]|[1]102701278-102701330[2]<==>chr17|+|[0]58972132-58972275[2]|[0]58972832-58972925[0]|[1]58979974-58981031[2] atgccggccatggtggagaagggccccgaggtctcagggaagcggagagggaggaacaacgcggccgcctccgcctccgccgccgccgcctccgccgccgcctcggccgcctgcgcctcgccagccgccactgccgcctcgggcgccgccgcctcctcagcctcggccgccgccgcctcagccgccgccgcccccaataatggccagaataaaagtttggcggcggcggcgcccaatggcaacagcagcagcaactcctgggaggaaggcagctcgggctcgtccagcgacgaggagcacggtggcggtggcatgagggtcggaccccagtaccaggcggtggtgcccgacttcgaccccgccaaactggcaagacgcagtcaagaacgggacaatcttggcatgttggtctggtcacccaatcaaaatctgtcagaagcaaagttggatgaatacattgccattgccaaagaaaagcatgggtacaacatggaacagAGCTTAAGATGTGGGACCACAGGAGTGGTGACTTTCATCAGAGGCAACATGCTACATGTGGCCTGGGTGGGTGATTCCCAGGTTATGCTTGTGAGAAAGGGCCAAGCTGTTGAACTAATGAAGCCACACAAACCAGACAGAGAGGATGAAAAGCAGAGAATTGAGGCCCTTGGAGGTTGCGTAGTCTGGTTTGGTGCCTGGAGGGTGAATGGAAGTCTGTCGGTTTCCAGAGCTATTGGAGATGCTGAACATAAGCCATATATCTGTGGGGATGCAGATTCTGCCTCCACTGTTCTGGATGGGACCGAAGACTACCTCATTCTGGCCTGTGATGGCTTCTATGACACCGTGAACCCTGATGAGGCAGTGAAAGTTGTGTCCGACCACCTGAAAGAGAATAATGGAGACAGCAGCATGGTTGCCCACAAATTAGTGGCATCAGCTCGTGATGCTGGGTCAAGTGATAACATCACGGTTATTGTGGTATTCCTGAGGGACATGAACAAAGCTGTAAATGTTAGTGAGGAATCAGATTGGACAGAGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGGATGATAAGGAGAATCATGGAGAGTGCAAACGCCCTTGGCCTCAGCACCAGTGCTCAGCACCAGCCGACCTAGGCTATGATGGGCGTGTGGATTCATTCACTGATAGAACTAGCCTGAGCCCAGGGTCCCAAATCAACGTGCTGGAAGACCCAGGCTACCTAGATCTCACACAAATAGAAGCAAGCAAACCTCACAGTGCCCAGTTTTTGCTACCAGTTGAGATGTTTGGTCCTGGTGCACCAAAGAAAGCAAATCTTATTAATGAGTTAATGATGGAGAAAAAATCAGTTCAGTCATCATTGCCTGAATGGAGTGGTGCTGGAGAGTTTCCCACTGCTTTCAATTTGGGTTCAACAGGGGAGCAGATATACAGAATGCAGAGCTTGTCTCCTGTCTGTTCAGGGTTGGAAAATGAACAGTTCAAATCCCCGGGAAACAGAGTTTCTAGATTGTCTCATTTACGCCACCACTACTCAAAGAAGTGGCACAGATTCAGGTTTAATCCAAAGTTTTATTCATTTCTCTCTGCTCAAGAGCCTTCCCACAAAATAGGCACTAGCCTGTCCTCACTTACTGGAAGTGGGAAGAGAAATAGGATAAGAAGTTCTCTGCCATGGAGGCAAAATAGTTGGAAAGGGTACAGTGAAAACATGAGGAAGCTCAGAAAGACTCATGATATTCCATGCCCAGATCTTCCTTGGAGCTATAAAATAGAATAA MPAMVEKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAASGAAASSASAAAASAAAAPNNGQNKSLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQSLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNKAVNVSEESDWTENSFQGGQEDGGDDKENHGECKRPWPQHQCSAPADLGYDGRVDSFTDRTSLSPGSQINVLEDPGYLDLTQIEASKPHSAQFLLPVEMFGPGAPKKANLINELMMEKKSVQSSLPEWSGAGEFPTAFNLGSTGEQIYRMQSLSPVCSGLENEQFKSPGNRVSRLSHLRHHYSKKWHRFRFNPKFYSFLSAQEPSHKIGTSLSSLTGSGKRNRIRSSLPWRQNSWKGYSENMRKLRKTHDIPCPDLPWSYKIE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33415 LRP6::DUSP16 ENSG00000070018.9::ENSG00000111266.9 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary star-fusion TRUE TRUE TRUE 2373 FALSE NA FALSE NA LRP6 ENSG00000070018.9 protein_coding - - chr12:12116025-12267044:- chr12:12203203:- chr12:12268959-12419978:- chr12:12356137:- DUSP16 ENSG00000111266.9 protein_coding - - chr12:12473282-12562863:- chr12:12500682:- chr12:12626216-12715797:- chr12:12653616:- chr12:12202880,chr12:12202888,chr12:12202891 chr12:12509753,chr12:12509758,chr12:12509758 NA NA chr12:12355814,chr12:12355822,chr12:12355825 chr12:12662687,chr12:12662692,chr12:12662692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF5050|50-241|0.0003^Ldl_recept_b|63-104|3.7e-07^SGL|65-127|0.002^SGL|65-215|0.00027^Arylesterase|88-119|0.43^SL4P|107-125|0.014^Ldl_recept_b|108-147|1.2e-13^NHL|112-120|3^NHL|137-150|3.6^Ldl_recept_b|150-191|4.3e-17^Arylesterase|177-208|0.085^SL4P|189-206|2.8^Ldl_recept_b|194-233|2.1e-09^YoeB_toxin|230-251|4.3^SL4P|233-248|1.6^Ldl_recept_b|237-248|0.00017^FXa_inhibition|286-323|1.8e-14^EGF|286-313|1.3e-05^cEGF|306-325|1.7e-06^NHL|310-320|4.4^Arylesterase|356-378|1.3^SGL|364-436|0.0083^DUF5050|370-552|1.5e-08^Ldl_recept_b|372-412|1.9e-08^Arylesterase|397-427|0.09^NHL|404-427|0.57^SL4P|414-429|0.41^Ldl_recept_b|416-455|8.3e-14^Ldl_recept_b|458-499|4.8e-16^SGL|476-525|7.2e-06^Arylesterase|482-518|0.065^NHL|489-505|0.059^SL4P|497-520|0.015^Ldl_recept_b|502-531|5.7e-06^YoeB_toxin|541-560|0.23^Ldl_recept_b|543-569|0.00053^SGL|543-568|0.12^SL4P|544-555|2.6^FXa_inhibition|592-627|1.3e-15^EGF|592-619|1.6e-05^cEGF|611-628|0.00058 DUF3268|562-606|2.6e-05^Y_phosphatase|563-589|3.5 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.21Mb] 25 10 25 10 ONLY_REF_SPLICE YES_LDAS 0.3286 GT 1.8323 AG 1.5628 ENST00000261349.9 1-647 ENST00000298573.9 368-1998 chr12|-|[1]12203203-12203400[2]|[1]12244262-12244655[1]|[0]12266681-12266735[0]<==>chr12|-|[2]12476833-12478015[2]|[1]12480223-12480346[1]|[0]12487028-12487187[0]|[2]12500519-12500682[1] atgggggccgtcctgaggagcctcctggcctgcagcttctgtgtgctcctgagagcggcccctttgttgctttatgcaaacagacgggacttgcgattggttgatgctacaaatggcaaagagaatgctacgattgtagttggaggcttggaggatgcagctgcggtggactttgtgtttagtcatggcttgatatactggagtgatgtcagcgaagaagccattaaacgaacagaatttaacaaaactgagagtgtgcagaatgttgttgtttctggattattgtcccccgatgggctggcatgtgattggcttggagaaaaattgtactggacagattctgaaactaatcggattgaagtttctaatttagatggatctttacgaaaagttttattttggcaagagttggatcaacccagagctattgccttagatccttcaagtgggttcatgtactggacagactggggagaagtgccaaagatagaacgtgctggaatggatggttcaagtcgcttcattataataaacagtgaaatttactggccaaatggactgactttggattatgaagaacaaaagctttattgggcagatgcaaaacttaatttcatccacaaatcaaatctggatggaacaaatcgGTGGGTTTGCTGAGTTCTCTCGTTGTTTCCCTGGCCTCTGTGAAGGAAAATCCACTCTAGTCCCTACCTGCATTTCTCAGCCTTGCTTACCTGTTGCCAACATTGGGCCAACCCGAATTCTTCCCAATCTTTATCTTGGCTGCCAGCGAGATGTCCTCAACAAGGAGCTGATGCAGCAGAATGGGATTGGTTATGTGTTAAATGCCAGCAATACCTGTCCAAAGCCTGACTTTATCCCCGAGTCTCATTTCCTGCGTGTGCCTGTGAATGACAGCTTTTGTGAGAAAATTTTGCCGTGGTTGGACAAATCAGTAGATTTCATTGAGAAAGCAAAAGCCTCCAATGGATGTGTTCTAGTGCACTGTTTAGCTGGGATCTCCCGCTCCGCCACCATCGCTATCGCCTACATCATGAAGAGGATGGACATGTCTTTAGATGAAGCTTACAGATTTGTGAAAGAAAAAAGACCTACTATATCTCCAAACTTCAATTTTCTGGGCCAACTCCTGGACTATGAGAAGAAGATTAAGAACCAGACTGGAGCATCAGGGCCAAAGAGCAAACTCAAGCTGCTGCACCTGGAGAAGCCAAATGAACCTGTCCCTGCTGTCTCAGAGGGTGGACAGAAAAGCGAGACGCCCCTCAGTCCACCCTGTGCCGACTCTGCTACCTCAGAGGCAGCAGGACAAAGGCCCGTGCATCCCGCCAGCGTGCCCAGCGTGCCCAGCGTGCAGCCGTCGCTGTTAGAGGACAGCCCGCTGGTACAGGCGCTCAGTGGGCTGCACCTGTCCGCAGACAGGCTGGAAGACAGCAATAAGCTCAAGCGTTCCTTCTCTCTGGATATCAAATCAGTTTCATATTCAGCCAGCATGGCAGCATCCTTACATGGCTTCTCCTCATCAGAAGATGCTTTGGAATACTACAAACCTTCCACTACTCTGGATGGGACCAACAAGCTATGCCAGTTCTCCCCTGTTCAGGAACTATCGGAGCAGACTCCCGAAACCAGTCCTGATAAGGAGGAAGCCAGCATCCCCAAGAAGCTGCAGACCGCCAGGCCTTCAGACAGCCAGAGCAAGCGATTGCATTCGGTCAGAACCAGCAGCAGTGGCACCGCCCAGAGGTCCCTTTTATCTCCACTGCATCGAAGTGGGAGCGTGGAGGACAATTACCACACCAGCTTCCTTTTCGGCCTTTCCACCAGCCAGCAGCACCTCACGAAGTCTGCTGGCCTGGGCCTTAAGGGCTGGCACTCGGATATCTTGGCCCCCCAGACCTCTACCCCTTCCCTGACCAGCAGCTGGTATTTTGCCACAGAGTCCTCACACTTCTACTCTGCCTCAGCCATCTACGGAGGCAGTGCCAGTTACTCTGCCTACAGCTGCAGCCAGCTGCCCACTTGCGGAGACCAAGTCTATTCTGTGCGCAGGCGGCAGAAGCCAAGTGACAGAGCTGACTCGCGGCGGAGCTGGCATGAAGAGAGCCCCTTTGAAAAGCAGTTTAAACGCAGAAGCTGCCAAATGGAATTTGGAGAGAGCATCATGTCAGAGAACAGGTCACGGGAAGAGCTGGGGAAAGTGGGCAGTCAGTCTAGCTTTTCGGGCAGCATGGAAATCATTGAGGTCTCCTGA MGAVLRSLLACSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRWVC*VLSLFPWPL*RKIHSSPYLHFSALLTCCQHWANPNSSQSLSWLPARCPQQGADAAEWDWLCVKCQQYLSKA*LYPRVSFPACACE*QLL*ENFAVVGQISRFH*ESKSLQWMCSSALFSWDLPLRHHRYRLHHEEDGHVFR*SLQICERKKTYYISKLQFSGPTPGL*EED*EPDWSIRAKEQTQAAAPGEAK*TCPCCLRGWTEKRDAPQSTLCRLCYLRGSRTKARASRQRAQRAQRAAVAVRGQPAGTGAQWAAPVRRQAGRQQ*AQAFLLSGYQISFIFSQHGSILTWLLLIRRCFGILQTFHYSGWDQQAMPVLPCSGTIGADSRNQS**GGSQHPQEAADRQAFRQPEQAIAFGQNQQQWHRPEVPFISTASKWERGGQLPHQLPFRPFHQPAAPHEVCWPGP*GLALGYLGPPDLYPFPDQQLVFCHRVLTLLLCLSHLRRQCQLLCLQLQPAAHLRRPSLFCAQAAEAK*QS*LAAELA*REPL*KAV*TQKLPNGIWREHHVREQVTGRAGESGQSV*LFGQHGNH*GLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 12397196|12419615 FALSE|FALSE 12674397|12674397 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33416 CARS1::OSBPL5 ENSG00000110619.18::ENSG00000021762.20 NCIH596 SRR8616162 SRR8670696 LUNG carcinoma (mixed_adenosquamous_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CARS1 ENSG00000110619.18 protein_coding - - chr11:3000922-3057613:- chr11:3012195:- chr11:3022152-3078843:- chr11:3033425:- OSBPL5 ENSG00000021762.20 protein_coding - - chr11:3087107-3166739:- chr11:3129169:- chr11:3108337-3187969:- chr11:3150399:- chr11:3009952 chr11:3129958 NA NA chr11:3031182 chr11:3151188 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CARS1:Oncogene"] 13 15 13 15 ONLY_REF_SPLICE YES_LDAS 0.2629 GT 1.5301 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE cysteinyl-tRNA synthetase 1 Yes ALCL leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33421 EXOC4::LRGUK ENSG00000131558.15::ENSG00000155530.4 2313287 SRR8616168 SRR8639137 STOMACH carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2374 FALSE NA FALSE NA EXOC4 ENSG00000131558.15 protein_coding + + chr7:133253073-134066589:+ chr7:133938069:+ chr7:132937829-133751342:+ chr7:133622822:+ LRGUK ENSG00000155530.4 protein_coding + + chr7:134127299-134264595:+ chr7:134183734:+ chr7:133812052-133949347:+ chr7:133868486:+ chr7:133968638,chr7:133968639 chr7:134182917,chr7:134182915 NA NA chr7:133653391,chr7:133653392 chr7:133867669,chr7:133867667 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame COG5_N|29-97|2.5e-05^Dor1|33-165|7.2e-05^Vps54_N|36-165|1.5e-06^T3SS_needle_E|36-71|0.062^Sec8_C|45-88|0.46^Sec8_N|45-143|2e-21^EXOC6_Sec15_N|47-153|6.6e-06^DUF948|63-94|0.69^DASH_Duo1|67-105|0.011^T3SS_needle_E|73-92|0.7^COG5_N|121-144|1.8^ECD|181-222|0.00068^Sec16|236-345|0.00026^Sec8_C|271-502|1.8e-21^DUF948|280-319|0.0015^DASH_Duo1|283-310|0.049^Sec8_N|288-316|1.5^Dor1|288-344|0.024^T3SS_needle_E|288-312|0.0035^Vps54_N|290-312|0.96^COG5_N|296-315|0.87^EXOC6_Sec15_N|297-313|1.5^ECD|377-397|0.4^DUF948|535-559|0.081^COG5_N|537-566|3.2^DASH_Duo1|540-553|1.4^Vps54_N|582-652|1.5^DASH_Duo1|707-730|6.4^Sec16|713-735|3.6^COG5_N|735-764|5.4^DUF948|746-772|0.76^Vps54_N|898-926|2.2^T3SS_needle_E|934-954|4.3 none ["EXOC4:Oncogene"];["LRGUK:Oncogene"];["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.06Mb];NEIGHBORS[60710] 6 14 6 14 ONLY_REF_SPLICE YES_LDAS 0.2711 GT 1.8256 AG 1.6402 ENST00000253861.5 1-2206 ENST00000695542.2 1215-3396 chr7|+|[0]133253102-133253187[1]|[2]133274982-133275171[2]|[0]133288922-133289116[2]|[0]133305877-133306061[1]|[2]133317284-133317390[0]|[1]133356330-133356573[1]|[2]133374828-133375002[2]|[0]133475328-133475473[1]|[2]133480050-133480138[0]|[1]133630045-133630141[1]|[2]133817325-133817544[2]|[0]133895599-133895735[1]|[2]133917583-133917738[1]|[2]133937891-133938069[0]<==>chr7|+|[2]134183734-134183853[1]|[2]134191655-134191751[2]|[0]134196992-134197105[2]|[0]134199220-134199421[0]|[1]134201481-134201576[0]|[1]134208704-134210256[2] atggcggcagaagcagctggtgggaaatacagaagcacagtcagcaaaagcaaagacccctcggggctgctcatctctgtgatcaggactctgtctactagtgacgatgtcgaagacagggaaaatgaaaagggtcgccttgaagaagcctacgagaaatgtgaccgtgacctggatgaattgattgtacagcactacacagaattgacgacagccattcgcacataccagagcatcacagagcgcatcactaactcccgaaataaaataaagcaggtaaaagagaacctgctttcatgcaagatgctgctgcactgcaaacgggatgagcttcggaaactgtggattgaaggaattgagcataagcatgtcctgaacttgttggatgaaattgagaatatcaagcaagtgcctcaaaagctggaacagtgcatggccagcaagcactatctcagtgccactgacatgttggtgtcagcagttgagtctttggagggccccctgctccaggtggaaggactgagtgaccttcgactagagcttcacagcaagaagatgaaccttcacttggttctcatagatgaactacaccggcacctgtacatcaaatcgactagccgagttgtgcagcgtaacaaggaaaaagggaaaatcagctccctcgtgaaagatgcttctgttcctctgattgatgttacaaacctccctactcctcgaaaattccttgatacctctcactattctactgctggaagctcaagtgtgagggagataaatctgcaggacatcaaggaagatttagaattggatccagaggaaaacagcaccctgtttatgggtatcctcattaagggcttggcgaaactgaagaagatcccagaaacagttaaggcaatcatagagcgcttggagcaggagttgaagcaaattgtgaagaggtctacaacccaggtggcagacagtggctatcagcggggggagaacgttactgtggagaaccaaccaaggttgcttctagaactgctggagttactgtttgacaagtttaatgctgtagccgctgcacactctgtggtcctgggatacctgcaggacactgtagtgactccactgactcagcaggaagatatcaaactgtatgatatggcagatgtatgggtgaagatccaagatgttctacagatgctattaactgagtacttggatatgaaaaatactcgtacggcctctgaaccatcagctcaactaagctatgccagcactggacgagagtttgcagccttttttgccaagaagaaacctcaaaggccaaaaaattctcttttcaagttcgaatcgtcctcccatgccatcagtatgagcgcctatctgcgagaacagagaagggagctctatagtcggagtggagaactgcaagggggtcctgatgacaacttaattgaaggtggaggaacaaaatttgtctgcaaacctggagccagaaacattaccgtcatattccacccattactaagatttattcaggagattgagcatgctctgggtcttggcccagccaaacagtgtcctcttcgagagtttctcaccgtgtacatcaaaaacatctttctcaatcaagtcttggctgagatcaacaaggagattgaaggagtcactaaaacatctgaccctttgaagattctggccaacgcagacaccatgaaggtgctgggagtgcagcggcctctcctacagagcacaatcattgtggagaagacagttcaagacctcctgaacctgatgcatgacttgagtgcatattcagatcaattcctcaacatggtgtgcgtgaagctccaggagtacaaggacacctgcactgcagcttacaggggtattgtccagtcagaagaaaaacttgtcatcagtgcatcctgggcaaaagatgatgatatcagcagactcttgaaatctctaccaaactggatgaatatggctcaacccaaacagctgaggccaaaaagagaggaggaagaagatttcataagggcagcttttggcaaggagtctgaagttcttattgggaacctgggtgataaattaatccctccacaagacatccttcgtgacgtcagtgacctcaaagccttggccaacatgcatgaaagcctggaatggttggcaagtcgaacaaagtcagctttctccaatctttctacatcccagaCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTAGCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATATGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAGACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTAAATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAGAAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGATATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAAATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACTGAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAGCTCCCGCTAGCAAGAAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAACTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAGCGTAACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGCCATCTCAATCCTGAGCTCCCTCAACACCTCAGTTCATCAGCACTGGGTCTTCCTCAGCAGGCCCAGGACCTATCCCTAAACCCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTAAAACAAATAGCCACTGAGACAGATGTCCCTGAGGTGGAAGCCAGTGAGGTTGGGCAGTCTCCCATCACCCCGACCCTGGTGCCTCCTGTGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACCCCTACTGGCCCTCCTCTGTCTGAACCTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAGAGAATTCAGGATGAGGAAATTGAGTCAGACAAACTTCCACCCAGCAGTTCCCACCATGATCCTCCAAAAGATTCTTCCCACACTGACTTGGTGCAGAAACTTGCTGGCGATTCTCAGCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCGAGTCAGTATCCCTCACCCAGAACTGCCACATCCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTTCCTAGAAGCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAGCAGGAGGCCCACACCCAAACTCCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACCTCCCATCAAACCATGACGGTCTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCATCAGCCCTCCGCACTCAAAACCACCACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGGTCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCCCAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAACTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGAAGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTCCCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTTGCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTTCTTGTCTAAGCTAG MAAEAAGGKYRSTVSKSKDPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDELIVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVLNLLDEIENIKQVPQKLEQCMASKHYLSATDMLVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIDELHRHLYIKSTSRVVQRNKEKGKISSLVKDASVPLIDVTNLPTPRKFLDTSHYSTAGSSSVREINLQDIKEDLELDPEENSTLFMGILIKGLAKLKKIPETVKAIIERLEQELKQIVKRSTTQVADSGYQRGENVTVENQPRLLLELLELLFDKFNAVAAAHSVVLGYLQDTVVTPLTQQEDIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKNIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQSTIIVEKTVQDLLNLMHDLSAYSDQFLNMVCVKLQEYKDTCTAAYRGIVQSEEKLVISASWAKDDDISRLLKSLPNWMNMAQPKQLRPKREEEEDFIRAAFGKESEVLIGNLGDKLIPPQDILRDVSDLKALANMHESLEWLASRTKSAFSNLSTSQTLFPAWMPLIPC*Y*LVLKLVGNESLPIASADSLALTSDMGPVIPQDHLTLEKGIELIIILSLKTFLMKW*TWGNSF*HLVMVITSMD*IGTP*KVSQEMVWQAVFIWK*KV*EV*NIPILSLVISWWCP*TRKNMRDICGEKDYSVVQKLNLLSPEWTFILKLIRIFRDILMR*SMQMIWMLPTKN*VSSLENTLD*LRNLPRVWLQLQQELPLARRLSLGCQHTWFHLPGAWRNCKQMAR*QSISLECKFMPRT*KIRA*LLPRTKSWLRMEKPIKKSFLLTAISILSSLNTSVHQHWVFLSRPRTYP*TQRKRMSNNQIFP*NK*PLRQMSLRWKPVRLGSLPSPRPWCLLCTLPLPRPAALSQARTRSQGRPR*PLLALLCLNLYRDLAPLPSALREFRMRKLSQTNFHPAVPTMILQKILPTLTWCRNLLAILSKL*RRKPPNRKPSESVSLTQNCHIPKT*QQIPSSPRPGEPRGPCFLEAGWLPLGCPSLRCWLPSRAGGPHPNSYRPAGKRL*EQPPIKP*RSLPGFHQPGKQTPVNFLPSALRTQNHHQI*APRQPTVFSKSRKRRSVR*NSLLSVPPARSKQNLASSVPPRRRRLRK*GSLAFLLLFRSQGCPRTRGLSLIQGLQRKGKLPKQAAPPGGRFQTCGPHPTTRGHFSRQGLGKKSSPTRKGRLEDWHLWKRHHLGTTSQPCS*NPTISQLPPWCPTIPTPALLLFLV*A FALSE TRUE hsa-mir-6133 chr7:133290881-133290988:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33425 GTDC1::ARHGAP15 ENSG00000121964.15::ENSG00000075884.14 22RV1 SRR8616169 SRR8639138 PROSTATE carcinoma primary star-fusion TRUE TRUE TRUE 2375 FALSE NA FALSE NA GTDC1 ENSG00000121964.15 protein_coding - - chr2:143938068-144332568:- chr2:144208603:- chr2:144695635-145090135:- chr2:144966170:- ARHGAP15 ENSG00000075884.14 protein_coding + + chr2:143091362-143768352:+ chr2:143487373:+ chr2:143848931-144525921:+ chr2:144244942:+ chr2:144201265,chr2:144201268 chr2:143470858,chr2:143470855 NA NA chr2:144958832,chr2:144958835 chr2:144228427,chr2:144228424 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF3524|2-167|7.8e-72 none ["DepMap2023"];INTRACHROMOSOMAL[chr2:0.17Mb] 65 42 65 42 ONLY_REF_SPLICE YES_LDAS 1.1049 GT 1.9656 AG 1.9656 ENST00000392871.6 1-179 ENST00000295095.11 704-1428 chr2|-|[1]144208603-144208781[0]<==>chr2|+|[1]143487373-143487495[0]|[1]143519266-143519364[0]|[1]143556408-143556485[0]|[1]143624133-143624267[0]|[1]143703419-143703524[1]|[2]143767989-143768172[2] atgagtatcctcatcattgaagcattctatggaggctcccataaacagctggtggatcttcttcaagaagagttaggagactgtgtcgtttatacccttcctgcaaagaaatggcattggagagcccggacatctgctttatatttctctcagaccattcccatcagtgagcattacagTGTTCAGACTGCATCACAGTGCTTCCGATACAAGCGACAAAAATCGAGTTAAAAGCAGATTAAAGAAGTTTATTACCCGAAGACCTTCCCTGAAAACTCTGCAAGAAAAAGGACTTATTAAAGATCAAATTTTTGGCTCTCATCTGCACAAAGTGTGTGAACGTGAAAATTCCACAGTTCCGTGGTTTGTAAAGCAATGCATTGAAGCTGTTGAGAAAAGAGGTCTAGATGTTGATGGAATATATCGAGTTAGTGGCAATCTGGCAACAATACAGAAGTTAAGATTTATTGTCAACCAAGAAGAGAAGCTGAATTTGGACGACAGCCAGTGGGAGGACATCCACGTTGTCACCGGAGCACTGAAGATGTTTTTCCGGGAGCTGCCTGAGCCGCTCTTCCCTTACAGTTTCTTTGAGCAGTTTGTGGAAGCGATCAAAAAGCAAGACAACAACACAAGAATTGAAGCTGTAAAATCTCTTGTACAAAAACTCCCTCCGCCAAATCGTGACACCATGAAAGTCCTCTTTGGACATCTAACTAAGATAGTGGCCAAAGCCTCCAAGAACCTCATGTCCACGCAAAGCTTGGGGATTGTATTTGGACCTACCCTTCTGCGAGCTGAAAATGAAACAGGAAACATGGCGATCCACATGGTCTACCAGAACCAGATAGCTGAGCTCATGCTGAGTGAGTACAGTAAGATCTTCGGCTCAGAGGAAGACTGA MSILIIEAFYGGSHKQLVDLLQEELGDCVVYTLPAKKWHWRARTSALYFSQTIPISEHYSVQTASQCFRYKRQKSS*KQIKEVYYPKTFPENSARKRTY*RSNFWLSSAQSV*T*KFHSSVVCKAMH*SC*EKRSRC*WNISS*WQSGNNTEVKIYCQPRREAEFGRQPVGGHPRCHRSTEDVFPGAA*AALPLQFL*AVCGSDQKARQQHKN*SCKISCTKTPSAKS*HHESPLWTSN*DSGQSLQEPHVHAKLGDCIWTYPSAS*K*NRKHGDPHGLPEPDS*AHAE*VQ*DLRLRGRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33432 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 2376 TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47294030:+ chr8:48173470-48648868:+ chr8:48206619:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129855747:- chr8:130851839-131029750:- chr8:130867993:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF4502|11-176|4.8e-72 CYRIA-B_Rac1-bd-PARTIAL|~302-320|1.8e-153 none 82 69 82 57.1 ONLY_REF_SPLICE YES_LDAS 1.5978 GT 1.9656 AG 1.7968 ENST00000519661.5 1-525 ENST00000694912.1 302-975 chr8|+|[0]47260959-47260991[2]|[0]47279862-47280017[2]|[0]47284028-47284094[0]|[1]47291033-47291137[0]|[1]47293867-47294030[2]<==>chr8|-|[2]129842142-129842205[2]|[1]129846804-129846874[0]|[2]129849243-129849369[2]|[1]129850835-129850914[0]|[2]129852162-129852278[0]|[2]129854266-129854343[0]|[2]129855611-129855747[1] atgccccgcggcagccgcgctcggggctctaagagaaaaaggagttggaatacagaatgcccatcctttccaggagaaagaccactgcaggtcagaagagcaggtctcaggacagcaggggcagctgcctctctctctgaagcatggctcaggtgtggagaagggtttcagaacacttctgggaatccgtcattaacagctgaagagaagacgattacagaaaagcaccttgaattatgccctagacccaagcaagaaaccaccacatctaaaagcaccagtgggcttacagacataacatggagctccagtggaagtgatttgtcggatgaagataagacactttctcagttacagagagatgaattacagtttatcgactgggagattgacagtgacagggcagaggctagtgactgtgatgaatttgaagatgacgagggtgctgtggaaatctcagactgtgcttcttgtgcaagtaatcagtctttgacaagtgatgagaagctgtcggagcttcccaagAAGCAGCATTAAGAGGTCTTCTGGGAGCCTTAACAAGTACCCCATATTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAATTCTTCATTTCACACTCCGGTTTGATGAACTCAAGATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAGAACATTGAGTCGTATGAGGATTAACAATGTACCGGCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAATGTCTTTGTTTTATGCTGAGGCAACTCCAATGCTGAAAACCTTGAGTGATGCCACAACAAAATTTGTATCAGAGAATAAAAATTTACCAATAGAAAATACCACAGATTGTTTAAGCACAATGGCTAGTGTATGCAGAGTCATGCTGGAAACACCGGAATACAGAAGCAGATTTACAAATGAAGAGACAGTGTCATTCTGCTTGAGGGTAATGGTGGGTGTCATAATACTCTATGACCACGTACATCCAGTGGGAGCATTTGCTAAAACTTCCAAAATTGATATGAAAGGTTGTATCAAAGTTCTTAAGGACCAACCTCCTAATAGTGTGGAAGGTCTTCTAAATGCTCTCAGGTACACAACAAAACATTTGAATGATGAGACTACCTCCAAGCAAATTAAATCCATGCTGCAATAA MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEIDSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKKQH*EVFWEP*QVPHILPPSI*SESRLLLNSLQKFFISHSGLMNSR*QILPYRMISAIIEEH*VV*GLTMYRQKEKMK*IMNWQIECLCFMLRQLQC*KP*VMPQQNLYQRIKIYQ*KIPQIV*AQWLVYAESCWKHRNTEADLQMKRQCHSA*G*WWVS*YSMTTYIQWEHLLKLPKLI*KVVSKFLRTNLLIVWKVF*MLSGTQQNI*MMRLPPSKLNPCCN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33434 SPIDR::CYRIB ENSG00000164808.17::ENSG00000153310.22 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 2377 TRUE 4361 TRUE 1652 SPIDR ENSG00000164808.17 protein_coding + + chr8:47260878-47736306:+ chr8:47291137:+ chr8:48173470-48648868:+ chr8:48203726:+ CYRIB ENSG00000153310.22 protein_coding - - chr8:129839593-130017504:- chr8:129855747:- chr8:130851839-131029750:- chr8:130867993:- chr8:47323438,chr8:47323435,chr8:47323435 chr8:129858818,chr8:129858762,chr8:129858821 NA NA chr8:48236027,chr8:48236024,chr8:48236024 chr8:130871064,chr8:130871008,chr8:130871067 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DUF4502|11-176|4.8e-72 CYRIA-B_Rac1-bd-PARTIAL|~302-320|1.8e-153 none 63 34 63 11.9 ONLY_REF_SPLICE YES_LDAS 0.8603 GT 1.9656 AG 1.7968 ENST00000519661.5 1-361 ENST00000694912.1 302-975 chr8|+|[0]47260959-47260991[2]|[0]47279862-47280017[2]|[0]47284028-47284094[0]|[1]47291033-47291137[0]<==>chr8|-|[2]129842142-129842205[2]|[1]129846804-129846874[0]|[2]129849243-129849369[2]|[1]129850835-129850914[0]|[2]129852162-129852278[0]|[2]129854266-129854343[0]|[2]129855611-129855747[1] atgccccgcggcagccgcgctcggggctctaagagaaaaaggagttggaatacagaatgcccatcctttccaggagaaagaccactgcaggtcagaagagcaggtctcaggacagcaggggcagctgcctctctctctgaagcatggctcaggtgtggagaagggtttcagaacacttctgggaatccgtcattaacagctgaagagaagacgattacagaaaagcaccttgaattatgccctagacccaagcaagaaaccaccacatctaaaagcaccagtgggcttacagacataacatggagctccagtggaagtgatttgtcggatgaagataagacactttctcagttacagagagAAGCAGCATTAAGAGGTCTTCTGGGAGCCTTAACAAGTACCCCATATTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTTGCAGAAATTCTTCATTTCACACTCCGGTTTGATGAACTCAAGATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGAAGAACATTGAGTCGTATGAGGATTAACAATGTACCGGCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAATGTCTTTGTTTTATGCTGAGGCAACTCCAATGCTGAAAACCTTGAGTGATGCCACAACAAAATTTGTATCAGAGAATAAAAATTTACCAATAGAAAATACCACAGATTGTTTAAGCACAATGGCTAGTGTATGCAGAGTCATGCTGGAAACACCGGAATACAGAAGCAGATTTACAAATGAAGAGACAGTGTCATTCTGCTTGAGGGTAATGGTGGGTGTCATAATACTCTATGACCACGTACATCCAGTGGGAGCATTTGCTAAAACTTCCAAAATTGATATGAAAGGTTGTATCAAAGTTCTTAAGGACCAACCTCCTAATAGTGTGGAAGGTCTTCTAAATGCTCTCAGGTACACAACAAAACATTTGAATGATGAGACTACCTCCAAGCAAATTAAATCCATGCTGCAATAA MPRGSRARGSKRKRSWNTECPSFPGERPLQVRRAGLRTAGAAASLSEAWLRCGEGFQNTSGNPSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQREAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIKSMLQ* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33435 SINHCAF::DENND5B ENSG00000139146.14::ENSG00000170456.16 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 2378 FALSE NA FALSE NA SINHCAF ENSG00000139146.14 protein_coding - - chr12:31280584-31327058:- chr12:31326024:- chr12:31433518-31479992:- chr12:31478958:- DENND5B ENSG00000170456.16 protein_coding - - chr12:31382226-31591136:- chr12:31402643:- chr12:31535160-31744070:- chr12:31555577:- chr12:31325403,chr12:31325410 chr12:31405897,chr12:31405901 NA NA chr12:31478337,chr12:31478344 chr12:31558831,chr12:31558835 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 60 6 60 6 ONLY_REF_SPLICE YES_LDAS 0.7581 GT 1.8323 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33436 ARID1A::ATP5IF1 ENSG00000117713.21::ENSG00000130770.18 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 2380 FALSE NA FALSE NA ARID1A ENSG00000117713.21 protein_coding + + chr1:26693236-26782104:+ chr1:26697540:+ chr1:27019727-27108595:+ chr1:27024031:+ ATP5IF1 ENSG00000130770.18 protein_coding + + chr1:28236109-28246906:+ chr1:28246589:+ chr1:28562620-28573417:+ chr1:28573100:+ chr1:26709393,chr1:26709387 chr1:28244016,chr1:28244002 NA NA chr1:27035884,chr1:27035878 chr1:28570527,chr1:28570513 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame ARID|1020-1104|6.6e-22 none ["ARID1A:FoundationOne_panel","ARID1A:Oncogene","ARID1A:ArcherDX_panel"] 28 5 28 5 ONLY_REF_SPLICE YES_LDAS 0.379 GT 1.6402 AG 1.9899 ENST00000324856.13 1-1137 ENST00000468425.2 180-228 chr1|+|[0]26696404-26697540[2]<==>chr1|+|[2]28246589-28246637[2] atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccgccctcggagctgaagaaagccgagcagcagcagcgggaggaggcggggggcgaggcggcggcggcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaaagcgagggccccgccgtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggtggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaactcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggcggcggcggtggcggcagcagcgatggggtgggggcgcctcctcactcagccgcggccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcgctgcagagcggcggcggcgggggcctggagccctacgcggggccccagcagaactctcacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctaccccccgcccgccccggcctacgcgctgagctccccgagaggtggcactccgggctccggcgcggcggcggctgccggctccaagccgcctccctcctccagcgcctccgcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctccgcggccggcgggggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagctcggcccggggctaccagggctaccccgggggcgactacagtggcgggccccaggacgggggcgccggcaagggcccggcggacatggcctcgcagtgttggggggctgcggcggcggcagctgcggcggcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagccccgggagcagcggcggcggggggcagccgctcgcccggacccctcagAGCACTTGGAGCTACCTTCTGTTTCTTTGCTGTAGAAGCCGTTGTGTGA MAAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESEGPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQSTWSYLLFLCCRSRCV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE AT rich interactive domain 1A (SWI-like) 1 Yes clear cell ovarian carcinoma, RCC, breast epithelial TSG, fusion missense, nonsense, frameshift, splice_site, large_deletion, translocation FALSE NA NA NA NA NA NA NA NA NA 33439 ARID3A::TMEM259 ENSG00000116017.11::ENSG00000182087.14 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE TRUE 2381 FALSE NA FALSE NA ARID3A ENSG00000116017.11 protein_coding + + chr19:925781-975939:+ chr19:960164:+ chr19:925781-975939:+ chr19:960164:+ TMEM259 ENSG00000182087.14 protein_coding - - chr19:1009648-1021179:- chr19:1014473:- chr19:1009647-1021178:- chr19:1014472:- chr19:962641 chr19:1016087 NA NA chr19:962641 chr19:1016086 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Nop14|49-156|0.0014^ARID|211-234|1.9^ARID|241-326|4e-28 Membralin-PARTIAL|~226-402|2.7e-163 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.03Mb];LOCAL_INVERSION:+:-:[33714] 16 10 16 10 ONLY_REF_SPLICE YES_LDAS 0.2987 GT 1.9086 AG 1.5656 ENST00000263620.8 1-766 ENST00000356663.8 226-1863 chr19|+|[0]929529-929896[1]|[2]932418-932742[2]|[0]960092-960164[0]<==>chr19|-|[2]1010350-1010895[0]|[2]1011096-1011195[2]|[1]1011367-1011499[1]|[0]1011580-1011663[1]|[0]1011741-1011798[0]|[2]1011892-1011992[1]|[0]1012066-1012188[1]|[0]1012463-1012573[1]|[0]1013241-1013340[0]|[2]1014192-1014473[0] atgaaactacaggccgtgatggagacgctgttgcagcggcagcagcgggcgcgccaggagctggaggcccggcagcagctgccccccgatccccctgctgcaccccccggccgggcccgggctgcccccgacgaggacagagagcccgagagtgcccggatgcagcgggctcagatggccgcactggcagccatgcgggctgcagctgcgggcctgggacacccagccagccccggcggctctgaggatgggcccccaggctcggaggaggaggacgcggcccgggaggggacaccgggctcacccgggcgaggcagagaagggccaggagaggagcactttgaggacatggcctccgacgaggacatgaagcccaaatgggaggaggaggagatggaggaagacctcggggaggatgaggaggaggaggaggaggattacgaggatgaggaggaggaggaggacgaggaggggctgggccccccaggccctgccagcttgggcaccacggcactgttcccccgaaaggcccagccaccccaggccttccgcggcgatggcgttcccagggtgctggggggccaggagcggccggggcctggccctgcccaccccggaggggccgcccacgtagccccgcagctgcagccgcctgaccacggcgactggacttacgaggagcagtttaagcagctctacgaactcgacggggaccccaagaggaaggaattcctggatgacttgttcagcttcatgcagaagcgagGCCCTGTTTGTGCTCTTCGTCCTGGCCTACATCCACATCGTCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCATGTGCGTGACAAGTGGCCGCGTGAGGGCATCCTGCGTGTGGAAGTGCGGCACAACTCGAGCCGCGCGCCCGTCTTCCTACAGTTCTGTGACAGCGGCGGCCGCGGGAGCTTCCCGGGCCTGGCCGTGGAACCAGGCAGCAACCTGGACATGGAAGATGAGGAGGAGGAAGAGCTGACCATGGAGATGTTTGGGAACAGCTCCATCAAGTTTGAGCTGGACATCGAGCCCAAGGTGTTCAAGCCGCCGAGTAGCACAGAGGCCCTGAATGACAGCCAGGAGTTCCCCTTCCCCGAGACGCCCACCAAAGTGTGGCCGCAGGACGAGTACATCGTGGAGTACTCACTAGAGTATGGCTTCCTTCGCCTGTCGCAGGCCACCCGCCAGCGCCTGAGCATCCCCGTCATGGTGGTCACCCTGGACCCCACGCGGGACCAGTGCTTCGGGGACCGCTTCAGCCGCCTGCTGCTGGATGAGTTCCTGGGCTACGATGACATCCTCATGTCCAGCGTGAAGGGCCTGGCCGAGAACGAGGAGAACAAGGGCTTCCTGCGGAATGTGGTGTCGGGCGAGCACTACCGCTTTGTGAGCATGTGGATGGCGCGGACGTCCTACCTGGCCGCCTTCGCCATCATGGTCATCTTCACGCTGAGCGTGTCCATGCTGCTGCGGTACTCACACCACCAGATCTTCGTCTTCATCGTGGACCTGCTGCAGATGCTGGAGATGAACATGGCCATCGCCTTCCCCGCAGCGCCCCTGCTGACCGTCATCCTGGCCCTCGTCGGGATGGAGGCCATCATGTCGGAGTTCTTCAACGACACCACCACCGCCTTCTACATCATCCTCATCGTGTGGCTCGCGGACCAGTATGACGCCATCTGCTGCCACACCAGCACCAGCAAGCGGCATTGGCTGCGGTTCTTCTATCTCTACCACTTCGCCTTCTATGCCTATCACTACCGCTTCAATGGGCAGTATAGCAGCCTGGCCCTGGTCACCTCCTGGCTCTTCATCCAGCATTCCATGATCTACTTCTTCCACCACTACGAGCTGCCTGCCATCCTGCAGCAGGTCCGCATCCAGGAGATGCTGCTTCAGGCGCCGCCACTGGGCCCCGGGACCCCCACGGCGCTGCCCGATGACATGAACAACAACTCGGGCGCCCCGGCTACAGCCCCTGACTCTGCCGGCCAGCCCCCCGCCCTGGGCCCCGTCTCGCCTGGGGCCAGCGGGAGTCCCGGGCCTGTGGCAGCGGCGCCCAGCTCCCTGGTGGCCGCGGCAGCCTCAGTGGCAGCAGCTGCCGGTGGTGACCTGGGTTGGATGGCAGAGACCGCTGCCATCATCACAGACGCCTCCTTCCTGTCCGGCCTGAGCGCCTCCCTCCTGGAGCGGCGTCCAGCCAGCCCGCTGGGCCCTGCTGGGGGCCTCCCCCACGCCCCCCAGGACAGTGTCCCCCCGAGTGACTCCGCAGCTTCTGACACAACTCCCCTGGGGGCTGCGGTAGGCGGGCCTAGCCCGGCCTCCATGGCCCCAACGGAGGCGCCCTCGGAGGTGGGGTCCTGA MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMAALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGPVCALRPGLHPHRLLPLAHQLPGACA*QVAA*GHPACGSAAQLEPRARLPTVL*QRRPRELPGPGRGTRQQPGHGR*GGGRADHGDVWEQLHQV*AGHRAQGVQAAE*HRGPE*QPGVPLPRDAHQSVAAGRVHRGVLTRVWLPSPVAGHPPAPEHPRHGGHPGPHAGPVLRGPLQPPAAG*VPGLR*HPHVQREGPGRERGEQGLPAECGVGRALPLCEHVDGADVLPGRLRHHGHLHAERVHAAAVLTPPDLRLHRGPAADAGDEHGHRLPRSAPADRHPGPRRDGGHHVGVLQRHHHRLLHHPHRVARGPV*RHLLPHQHQQAALAAVLLSLPLRLLCLSLPLQWAV*QPGPGHLLALHPAFHDLLLPPLRAACHPAAGPHPGDAASGAATGPRDPHGAAR*HEQQLGRPGYSP*LCRPAPRPGPRLAWGQRESRACGSGAQLPGGRGSLSGSSCRW*PGLDGRDRCHHHRRLLPVRPERLPPGAASSQPAGPCWGPPPRPPGQCPPE*LRSF*HNSPGGCGRRA*PGLHGPNGGALGGGVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33444 CDK8::LATS2 ENSG00000132964.13::ENSG00000150457.9 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CDK8 ENSG00000132964.13 protein_coding + + chr13:26254104-26420982:+ chr13:26353880:+ chr13:26828241-26995119:+ chr13:26928017:+ LATS2 ENSG00000150457.9 protein_coding - - chr13:20973036-21061586:- chr13:21046230:- chr13:21547175-21635725:- chr13:21620369:- chr13:26366648,chr13:26366649 chr13:21058030,chr13:21058029 NA NA chr13:26940785,chr13:26940786 chr13:21632169,chr13:21632168 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CDK8:ArcherDX_panel","CDK8:FoundationOne_panel"];["LATS2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:5.19Mb] 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1493 GT 1.9329 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Cyclin-dependent kinase 8 CMGC CDK CDK8 P49336 TRUE FRAME_UNKNOWN Serine/threonine-protein kinase LATS2 AGC NDR Q9NRM7 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE large tumor suppressor kinase 2 1 Yes malignant mesothelioma epithelial TSG large_deletion, frameshift, nonsense 33448 MSC-AS1::ENSG00000259560 ENSG00000235531.11::ENSG00000259560.2 59M SRR8616171 SRR8639139 OVARY carcinoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MSC-AS1 ENSG00000235531.11 lncRNA + + chr8:71828167-72118393:+ chr8:71965534:+ chr8:72740402-73030628:+ chr8:72877769:+ ENSG00000259560 ENSG00000259560.2 lncRNA - - chr15:87325829-87703852:- chr15:87355714:- chr15:87869060-88247083:- chr15:87898945:- chr8:71997080 chr15:87417164 NA NA chr8:72909315 chr15:87960395 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 15 4 12.83 INCL_NON_REF_SPLICE YES_LDAS 0.1933 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33450 TAOK1::CCL13 ENSG00000160551.12::ENSG00000181374.8 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE TRUE TRUE 2383 FALSE NA FALSE NA TAOK1 ENSG00000160551.12 protein_coding + + chr17:29390363-29551903:+ chr17:29502723:+ chr17:27717381-27878921:+ chr17:27829741:+ CCL13 ENSG00000181374.8 protein_coding + + chr17:34356480-34358610:+ chr17:34358026:+ chr17:32683499-32685629:+ chr17:32685045:+ chr17:29507081,chr17:29507077,chr17:29507072 chr17:34357519,chr17:34357512,chr17:34357512 NA NA chr17:27834099,chr17:27834095,chr17:27834090 chr17:32684538,chr17:32684531,chr17:32684531 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|29-280|4.6e-69^PK_Tyr_Ser-Thr|32-278|7.9e-48^APH|143-191|1.8e-05^TcdB_N|472-495|0.17^PK_Tyr_Ser-Thr|503-560|0.96^Pkinase|522-552|2^TcdB_N|558-599|0.00042^DUF6086|725-795|7.1e-05^TcdB_N|742-763|0.09^APH|825-868|1.9 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:4.80Mb] 86 72 86 72 ONLY_REF_SPLICE YES_LDAS 1.7499 GT 1.9329 AG 1.7819 ENST00000261716.8 1-1338 ENST00000225844.7 192-297 chr17|+|[0]29451549-29451680[2]|[0]29467145-29467216[2]|[0]29475670-29475771[2]|[0]29477661-29477706[0]|[1]29478251-29478347[1]|[2]29480368-29480481[1]|[2]29482197-29482288[0]|[1]29489664-29489757[1]|[2]29491784-29491865[2]|[0]29495560-29495727[2]|[0]29498318-29498521[2]|[0]29502589-29502723[2]<==>chr17|+|[2]34358026-34358131[2] atgccatcaactaacagagcaggcagcctgaaggaccctgaaattgcagagctcttcttcaaagaagatccagagaagctcttcacagatctcagagaaattggccatggaagctttggagcagtgtattttgcacgagatgtgcgtaccaatgaagtggtggccatcaagaaaatgtcttatagtggaaagcagtctactgagaaatggcaggatattattaaggaagtcaagtttctacaaagaataaaacatcccaacagtatagaatacaaaggctgttatttacgtgaacacacagcatggcttgtaatggaatattgtttaggatctgcttcggatttactagaagttcacaaaaagccattacaagaagtggaaatagcagcaattacacatggtgctcttcagggattagcctacttacattctcatactatgattcatagagatatcaaagcaggaaatatccttctgacagaaccaggccaggtgaaacttgctgactttggctctgcttccatggcatcacctgccaattcctttgtgggaacgccgtattggatggccccagaagtaattttagccatggatgaaggacaatatgatggcaaagtagatgtgtggtctcttggaataacatgtattgaactagcggaaaggaagcctcctttatttaatatgaatgcaatgagtgccttatatcacatagcccaaaatgaatcccctacactacagtctaatgaatggtctgattattttcgcaactttgtagattcttgcctccagaaaatccctcaagatcgacctacatcagaggaacttttaaagcacatatttgttcttcgggagcgccctgaaaccgtgttaatagatctcattcagaggacaaaggatgcagtaagagagctggacaatctgcagtatcgaaagatgaagaaactccttttccaggaggcacataatggaccagcagtagaagcacaggaagaagaagaggaacaagatcatggtgttggccggacaggaacagttaatagtgttggaagtaatcaatccattcccagcatgtccatcagtgccagcagccaaagcagtagtgttaacagtcttccagatgtctcagatgacaagagtgagctagacatgatggagggagaccacacagtgatgtctaacagttctgttatccatttaaaaccagaggaagaaaattacagagaagagggagatcctagaacaagagcatcagatccacaatctccaccccaagtatctcgtcacaaatcacactatcgtaatcgagaacactttgctactatacggacagcatcactgCTTCAGAACCAAACTGGGCAAGGAGATCTGTGCTGACCCAAAGGAGAAGTGGGTCCAGAATTATATGAAACACCTGGGCCGGAAAGCTCACACCCTGAAGACTTGA MPSTNRAGSLKDPEIAELFFKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSTEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHTMIHRDIKAGNILLTEPGQVKLADFGSASMASPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHIFVLRERPETVLIDLIQRTKDAVRELDNLQYRKMKKLLFQEAHNGPAVEAQEEEEEQDHGVGRTGTVNSVGSNQSIPSMSISASSQSSSVNSLPDVSDDKSELDMMEGDHTVMSNSSVIHLKPEEENYREEGDPRTRASDPQSPPQVSRHKSHYRNREHFATIRTASLLQNQTGQGDLC*PKGEVGPELYETPGPESSHPEDL FALSE TRUE hsa-mir-4523 chr17:29390662-29390730:+ FALSE NA NA FALSE NA NA TRUE FALSE Serine/threonine-protein kinase TAO1 STE STE20 TAO Q7L7X3 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33451 TIAM1::ATP5PO ENSG00000156299.15::ENSG00000241837.7 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE FALSE TRUE 2384 FALSE NA FALSE NA TIAM1 ENSG00000156299.15 protein_coding - - chr21:31118416-31559977:- chr21:31164962:- chr21:32490734-32932290:- chr21:32537279:- ATP5PO ENSG00000241837.7 protein_coding - - chr21:33903453-33915814:- chr21:33904021:- chr21:35275757-35288118:- chr21:35276325:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PH|449-546|9.3e-19^PH_9|449-547|3.6e-13^PH_11|453-544|2e-05^RhoGEF|550-590|5.8^RNA_pol_Rpc82|555-618|0.00015^Tiam_CC_Ex|572-669|1.2e-45^RBD|767-839|2.5e-18^PDZ|856-918|2.4e-11^PDZ_2|861-906|7.3e-08^PDZ_6|875-902|1.9e-07^RhoGEF|1044-1232|3.5e-45^PH|1118-1143|2.5^PH|1288-1394|4.9e-07^PH_11|1368-1391|2.6 none ["TIAM1:Oncogene"] 50 44 50 44 ONLY_REF_SPLICE YES_LDAS 1.0411 GT 1.8062 AG 1.9656 ENST00000541036.6 1-2991 ENST00000290299.7 442-642 chr21|-|[2]31164962-31165065[1]|[0]31182421-31182645[1]|[0]31187001-31187087[1]|[0]31195224-31195305[0]|[2]31202908-31203012[0]|[2]31210045-31210215[0]|[2]31213398-31213472[0]|[2]31217553-31217699[0]|[2]31223406-31223591[0]|[2]31225726-31225950[0]|[2]31245488-31245660[1]|[0]31251742-31252189[0]|[2]31266010-31266972[0]<==>chr21|-|[2]33903526-33903639[0]|[2]33903935-33904021[0] atgggaaacgcagaaagtcaacatgtagagcacgagttttatggagaaaagcatgccagcctggggcgcaagcacacttcccgctccctgcgcctctcgcacaagacgcggaggaccaggcacgcttcctcggggaaggtgatccacaggaactccgaagtgagcacccgatccagcagcacccccagcatcccccagtccctggctgaaaatggcctggagcccttctcccaagatggtaccctagaagacttcgggagccccatctgggtggaccgagtggacatgggcttgagacctgtgtcttacactgactcttctgtcactcccagcgtagacagcagcatcgtcctcacagcagcctctgtgcagagcatgccagacactgaggagagcaggctttacggggatgacgctacatatttggctgagggaggcaggaggcagcattcctatacatccaatgggcccactttcatggagacggcgagctttaagaagaaacgctccaaatctgcagacatctggcgggaggacagcctggaattctcactctctgatctgagccaagaacatttaacaagcaacgaagaaatcttgggttccgccgaagagaaggactgcgaggaggctcgggggatggaaacgcgggcgagtccgcggcagctcagcacctgtcagagagccaattccttgggtgacttgtatgctcagaaaaactctggagtgacagcaaacggggggccggggagcaaatttgcaggctactgtcggaatttggtgtctgatattcccaatcttgcaaaccataagatgccaccagctgctgctgaagagactcctccgtacagtaattataacacacttccctgtaggaaatctcactgtctctctgaaggtgccaccaacccacaaattagccatagcaacagcatgcaaggcagaagagctaaaacaactcaggatgttaatgcaggcgagggcagtgagtttgcagacagtgggattgaaggggccactaccgacacggacctcctgtccaggcgatctaatgccaccaactccagctactcacccaccacaggccgggcctttgtgggcagcgacagcggcagcagctccaccggggatgcggctcgtcagggggtgtacgagaacttccggcgggagctggagatgagcaccaccaacagcgagagcctggaggaggccggctcggcgcacagcgatgagcagagcagcggcaccctgagctctccgggccagtcggacatcctgctgaccgccgcacagggcacggtgcgcaaggccggcgccctggccgtcaagaacttcctggtgcacaagaagaacaagaaggtggagtcagccacccggaggaagtggaagcactactgggtgtccctgaaaggatgcacgctatttttctacgagagcgacggcaggtctgggatagaccacaacagcatccccaaacacgccgtctgggtggagaacagcattgtgcaggcggtgcctgagcaccccaagaaggactttgtcttctgcctcagcaattccctgggtgatgccttcctttttcagaccactagccagacggagcttgaaaactggatcaccgccatccactctgcctgcgccactgcggtcgcgaggcaccaccacaaggaagacacgctccgactcctgaaatcagagatcaaaaaactggaacagaagattgacatggatgaaaagatgaagaaaatgggtgaaatgcagctgtcttcagtcactgactcaaagaaaaagaaaacaatattagatcagatctttgtctgggagcaaaatctcgagcagttccaaatggacctgtttcgtttccgctgttatttagccagccttcagggtggggagctgccaaaccccaaaaggcttctcgcttttgcaagtcgaccaacgaaagtggccatgggccgccttggaatcttttcggtatcatcgtttcatgccctggtggcagcacgcactggtgaaactggagtgagaagacgtactcaggccatgtccagatccgcgagcaagcgaaggagcaggttttcttctctgtggggtctggatactacctccaaaaagaagcagggacggccaagcatcaatcaggtgtttggagagggaaccgaagctgtaaagaaatctttagagggaatatttgatgacattgttccagatggcaagagggagaaagaagtggtcttacctaacgttcaccagcacaaccctgactgcgacatttgggtccacgagtatttcactccatcctggttctgtctgcccaataatcagcctgccctgacggtcgtccggccaggcgacactgcacgggacaccctggagctgatttgcaagacacatcaactggatcattctgctcattacctgcgcctgaaatttctaatagaaaacaaaatgcagctctatgttccacagcccgaggaagacatctatgagctgctgtacaaagaaattgaaatctgtccaaaagtcactcagagcatccacattgagaagtcagatacagctgctgatacttacgggttttcactttcttctgtggaagaagatggtattcgaaggctgtacgtgaatagtgtgaaggaaaccggtttagcttccaagaaaggcctgaaagcaggagatgagattcttgagatcaataatcgtgctgctgacgccctgaactcttctatgctcaaagatttcctctcacagccctcgctgggcctcctggtgaggacctaccccgagctggaggaaggagtggagctgctggaaagcccgccccaccgagtggacggccctgccgaccttggcgagagccccctcgcctttctcaccagcaacccagggcacagcctttgcagcgagcagggcagcagtgctgagaccgctccagaggagaccgaggggccagacttggaatcctcagatgagactgatcacagcagcaagCCTTTAGAAGAAGCCACACTCTCTGAATTAAAAACTGTCCTCAAGAGCTTCCTAAGTCAAGGCCAAGTATTGAAATTGGAGGCTAAGACTGATCCGTCAATCTTGGGTGGAATGATTGTGCGCATTGGCGAGAAATATGTTGACATGTCTGTCAAGACCAAGATTCAGAAGCTGGGCAGGGCTATGCGGGAGATTGTCTAA MGNAESQHVEHEFYGEKHASLGRKHTSRSLRLSHKTRRTRHASSGKVIHRNSEVSTRSSSTPSIPQSLAENGLEPFSQDGTLEDFGSPIWVDRVDMGLRPVSYTDSSVTPSVDSSIVLTAASVQSMPDTEESRLYGDDATYLAEGGRRQHSYTSNGPTFMETASFKKKRSKSADIWREDSLEFSLSDLSQEHLTSNEEILGSAEEKDCEEARGMETRASPRQLSTCQRANSLGDLYAQKNSGVTANGGPGSKFAGYCRNLVSDIPNLANHKMPPAAAEETPPYSNYNTLPCRKSHCLSEGATNPQISHSNSMQGRRAKTTQDVNAGEGSEFADSGIEGATTDTDLLSRRSNATNSSYSPTTGRAFVGSDSGSSSTGDAARQGVYENFRRELEMSTTNSESLEEAGSAHSDEQSSGTLSSPGQSDILLTAAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYESDGRSGIDHNSIPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACATAVARHHHKEDTLRLLKSEIKKLEQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQGGELPNPKRLLAFASRPTKVAMGRLGIFSVSSFHALVAARTGETGVRRRTQAMSRSASKRRSRFSSLWGLDTTSKKKQGRPSINQVFGEGTEAVKKSLEGIFDDIVPDGKREKEVVLPNVHQHNPDCDIWVHEYFTPSWFCLPNNQPALTVVRPGDTARDTLELICKTHQLDHSAHYLRLKFLIENKMQLYVPQPEEDIYELLYKEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELEEGVELLESPPHRVDGPADLGESPLAFLTSNPGHSLCSEQGSSAETAPEETEGPDLESSDETDHSSKPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33452 CASC15::PPARG ENSG00000272168.10::ENSG00000132170.24 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE TRUE TRUE 2386 FALSE NA FALSE NA CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21909603:+ chr6:21664415-22654684:+ chr6:21909834:+ PPARG ENSG00000132170.24 protein_coding + + chr3:12287368-12434356:+ chr3:12379704:+ chr3:12328867-12475855:+ chr3:12421203:+ chr6:21957291,chr6:21957289 chr3:12338239,chr3:12338234 NA NA chr6:21957522,chr6:21957520 chr3:12379738,chr3:12379733 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PPARG:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr6--chr3] 39 37 39 37 ONLY_REF_SPLICE YES_LDAS 0.8417 GT 1.9219 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE peroxisome proliferative activated receptor, gamma 1 Yes follicular thyroid epithelial TSG, fusion translocation 33455 ZMYND11::SLIT3 ENSG00000015171.21::ENSG00000184347.16 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE TRUE TRUE 2385 FALSE NA FALSE NA ZMYND11 ENSG00000015171.21 protein_coding + + chr10:130088-254637:+ chr10:180128:+ chr10:176028-300577:+ chr10:226068:+ SLIT3 ENSG00000184347.16 protein_coding - - chr5:168661740-169301139:- chr5:169251459:- chr5:168088745-168728143:- chr5:168678463:- chr10:186160,chr10:186161 chr5:169299802,chr5:169299801 NA NA chr10:232100,chr10:232101 chr5:168726806,chr5:168726805 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame GIT1_C|12-54|0.0014^SAMD1_WH|18-67|1.2e-10^PHD|97-106|0.32^zf-MYND-PARTIAL|103-116~|0.32^PHD-PARTIAL|103-116~|2.3e-07 LRR_8-PARTIAL|~198-217|4.9e-15^LRR_4-PARTIAL|~198-216|0.00011^LRR_5-PARTIAL|~198-215|7.9e-10^LRR_9-PARTIAL|~198-224|9e-05^LRR_1-PARTIAL|~198-204|0.005^LRR_1|207-219|1.1^LRRCT|240-264|1.2e-05^LRRNT|280-306|1.8e-09^LRR_8|311-367|3.8e-17^LRR_4|312-347|1.6e-05^LRR_5|321-436|6.8e-13^LRR_8|332-391|3e-18^LRR_9|332-416|3.1e-09^LRR_1|332-354|0.0008^LRR_4|355-394|0.00012^LRR_1|356-376|0.035^LRR_8|380-438|4.3e-13^LRR_1|380-402|3.6^LRR_4|403-442|4.1e-05^LRR_1|404-422|0.36^LRR_1|428-439|1.6^DL-JAG_EGF-like|436-444|0.8^EGF|437-443|8.2^hEGF|437-443|2.9^LRRNT|438-446|0.85^LRRCT|462-486|9.3e-06^hEGF|499-511|6.3^LRRNT|505-531|1.9e-07^LRR_8|534-593|5e-15^LRR_4|536-572|6.3e-08^LRR_9|538-615|5.7e-06^LRR_5|552-663|2.3e-10^LRR_1|558-572|0.0064^LRR_8|582-640|3e-16^LRR_4|582-621|0.00073^LRR_1|583-601|0.56^LRR_9|604-665|0.0034^LRR_8|606-664|1.3e-15^LRR_1|607-628|0.84^LRR_4|630-663|1.3e-05^LRR_1|631-652|0.015^EGF|662-670|3.4^hEGF|662-669|1.6^DL-JAG_EGF-like|662-675|0.0089^LRRNT|664-671|0.11^EGF_3|665-670|7.2^LRRCT|687-712|4.6e-06^LRRNT|725-751|7.6e-10^JAG1-like_EGF2|726-733|3.2^LRR_8|754-811|1.4e-12^LRR_4|754-790|2.6e-06^LRR_1|755-772|0.093^LRR_9|756-859|1e-06^LRRNT|764-771|1.2^LRR_1|776-798|0.0075^LRR_5|778-854|4.9e-08^LRR_8|799-859|9.1e-16^LRR_4|800-838|6.2e-07^LRR_1|800-822|0.02^LRR_4|824-859|1.8e-06^LRR_1|824-845|0.02^DL-JAG_EGF-like|857-864|4.7^LRRNT|859-867|2.8^LRRCT|882-906|3.3e-06^EGF|927-957|5.7e-07^EGF_3|931-956|0.058^hEGF|932-951|0.00043^DL-JAG_EGF-like|935-950|3^JAG1-like_EGF2|936-959|0.28^EGF|966-999|6.6e-09^hEGF|971-995|8.7e-05^EGF_3|971-997|0.057^JAG1-like_EGF2|973-1000|0.029^DL-JAG_EGF-like|987-1001|4^LRRNT|988-992|9.9^EGF|1007-1036|1.4e-10^EGF_3|1009-1036|2.4e-06^hEGF|1012-1031|3.8e-08^JAG1-like_EGF2|1025-1039|0.11^DL-JAG_EGF-like|1025-1040|0.12^EGF|1045-1076|4.7e-10^EGF_3|1045-1075|1.5e-06^hEGF|1052-1073|2.8e-06^DL-JAG_EGF-like|1065-1081|0.00028^JAG1-like_EGF2|1066-1081|0.06^EGF|1085-1114|2.9e-10^EGF_3|1088-1113|1.8e-06^hEGF|1090-1111|2.6e-10^JAG1-like_EGF2|1091-1116|0.00014^DL-JAG_EGF-like|1103-1118|0.00041^LRRCT|1114-1122|1.2^EGF|1130-1160|1.4e-10^EGF_3|1133-1158|9e-05^hEGF|1135-1156|4.3e-08^DL-JAG_EGF-like|1149-1163|0.22^JAG1-like_EGF2|1150-1161|0.14^Laminin_G_1|1193-1323|3.3e-22^Laminin_G_2|1194-1321|4.1e-28^EGF|1339-1369|3.6e-05^hEGF|1345-1366|0.00011^JAG1-like_EGF2|1346-1373|8.9e-05^EGF_3|1347-1368|0.0017^DL-JAG_EGF-like|1360-1374|4.3e-06^EGF|1379-1407|1.5e-08^EGF_3|1382-1407|0.00012^hEGF|1384-1404|1.2e-06^JAG1-like_EGF2|1386-1410|1.2e-06^DL-JAG_EGF-like|1386-1411|2.4e-05^EGF|1419-1449|1.7e-06^hEGF|1424-1445|0.0015^EGF_3|1425-1448|1.5^JAG1-like_EGF2|1426-1452|0.13^DL-JAG_EGF-like|1426-1453|0.032^EGF|1450-1458|7 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr5] 12 8 12 8 ONLY_REF_SPLICE YES_LDAS 0.2215 GT 1.8892 AG 1.8892 ENST00000704315.1 1-116 ENST00000332966.8 198-4593 chr10|+|[0]180013-180128[1]<==>chr5|-|[2]168666454-168666689[1]|[0]168669783-168669991[2]|[1]168671198-168671483[1]|[0]168673177-168673331[2]|[1]168683966-168684096[0]|[2]168685687-168685927[2]|[1]168686979-168687116[2]|[1]168692607-168692700[1]|[0]168696292-168696431[2]|[1]168700582-168700679[0]|[2]168707976-168708121[1]|[0]168710895-168711058[2]|[1]168712283-168712354[2]|[1]168722256-168722327[2]|[1]168722933-168723004[2]|[1]168724416-168724484[2]|[1]168748302-168748434[1]|[0]168749472-168749635[2]|[1]168752955-168753098[2]|[1]168753864-168754007[2]|[1]168760862-168760936[2]|[1]168762539-168762689[1]|[0]168772781-168772944[2]|[1]168774235-168774378[2]|[1]168785907-168785978[2]|[1]168789560-168789631[2]|[1]168795507-168795578[2]|[1]168806446-168806587[1]|[0]168817300-168817463[2]|[1]168823260-168823331[2]|[1]168844584-168844655[2]|[1]168883265-168883336[2]|[1]169193479-169193550[2]|[1]169244705-169244776[2]|[1]169251388-169251459[2] atggcacgtttaacaaaaagacgacaggcggatacaaaagctatccagcatctttgggcagccattgagattatacggaaccagaagcagattgccaacattgaccgtattacaaaTGACCTGGACAGAAATAATATCACCAGGATCACCAAGATGGACTTCGCTGGGCTCAAGAACCTCCGAGTCTTGCATCTGGAAGACAACCAGGTCAGCGTCATCGAGAGAGGCGCCTTCCAGGACCTGAAGCAGCTAGAGCGACTGCGCCTGAACAAGAATAAGCTGCAAGTCCTTCCAGAATTGCTTTTCCAGAGCACGCCGAAGCTCACCAGACTAGATTTGAGTGAAAACCAGATCCAGGGGATCCCGAGGAAGGCGTTCCGCGGCATCACCGATGTGAAGAACCTGCAACTGGACAACAACCACATCAGCTGCATTGAAGATGGAGCCTTCCGAGCGCTGCGCGATTTGGAGATCCTTACCCTCAACAACAACAACATCAGTCGCATCCTGGTCACCAGCTTCAACCACATGCCGAAGATCCGAACTCTGCGCCTCCACTCCAACCACCTGTACTGCGACTGCCACCTGGCCTGGCTCTCGGATTGGCTGCGACAGCGACGGACAGTTGGCCAGTTCACACTCTGCATGGCTCCTGTGCATTTGAGGGGCTTCAACGTGGCGGATGTGCAGAAGAAGGAGTACGTGTGCCCAGCCCCCCACTCGGAGCCCCCATCCTGCAATGCCAACTCCATCTCCTGCCCTTCGCCCTGCACGTGCAGCAATAACATCGTGGACTGTCGAGGAAAGGGCTTGATGGAGATTCCTGCCAACTTGCCGGAGGGCATCGTCGAAATACGCCTAGAACAGAACTCCATCAAAGCCATCCCTGCAGGAGCCTTCACCCAGTACAAGAAACTGAAGCGAATAGACATCAGCAAGAATCAGATATCGGATATTGCTCCAGATGCCTTCCAGGGCCTGAAATCACTCACATCGCTGGTCCTGTATGGGAACAAGATCACCGAGATTGTCAAGGGACTGTTTGATGGGCTGGTGTCCCTACAGCTGCTCCTCCTCAATGCCAACAAGATCAACTGCCTGCGGGTGAACACGTTTCAGGACCTGCAGAACCTCAACTTGCTCTCCCTGTATGACAACAAGCTGCAGACCATCAGCAAGGGGCTCTTCGCCCCTCTGCAGTCCATCCAGACACTCCACTTAGCCCAAAACCCATTTGTGTGCGACTGCCACTTGAAGTGGCTGGCCGACTACCTCCAGGACAACCCCATCGAGACAAGCGGGGCCCGCTGCAGCAGCCCGCGCCGACTCGCCAACAAGCGCATCAGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCAGGCTCCGAGGATTACCGCAGCAGGTTCAGCAGCGAGTGCTTCATGGACCTCGTGTGCCCCGAGAAGTGTCGCTGTGAGGGCACGATTGTGGACTGCTCCAACCAGAAGCTGGTCCGCATCCCAAGCCACCTCCCTGAATATGTCACCGACCTGCGACTGAATGACAATGAGGTATCTGTTCTGGAGGCCACTGGCATCTTCAAGAAGTTGCCCAACCTGCGGAAAATAAATCTGAGTAACAATAAGATCAAGGAGGTGCGAGAGGGAGCTTTCGATGGAGCAGCCAGCGTGCAGGAGCTGATGCTGACAGGGAACCAGCTGGAGACCGTGCACGGGCGCGTGTTCCGTGGCCTCAGTGGCCTCAAAACCTTGATGCTGAGGAGTAACTTGATCGGCTGTGTGAGTAATGACACCTTTGCCGGCCTGAGTTCGGTGAGACTGCTGTCCCTCTATGACAATCGGATCACCACCATCACCCCTGGGGCCTTCACCACGCTTGTCTCCCTGTCCACCATAAACCTCCTGTCCAACCCCTTCAACTGCAACTGCCACCTGGCCTGGCTCGGCAAGTGGTTGAGGAAGAGGCGGATCGTCAGTGGGAACCCTAGGTGCCAGAAGCCATTTTTCCTCAAGGAGATTCCCATCCAGGATGTGGCCATCCAGGACTTCACCTGTGATGGCAACGAGGAGAGTAGCTGCCAGCTGAGCCCGCGCTGCCCGGAGCAGTGCACCTGTATGGAGACAGTGGTGCGATGCAGCAACAAGGGGCTCCGCGCCCTCCCCAGAGGCATGCCCAAGGATGTGACCGAGCTGTACCTGGAAGGAAACCACCTAACAGCCGTGCCCAGAGAGCTGTCCGCCCTCCGACACCTGACGCTTATTGACCTGAGCAACAACAGCATCAGCATGCTGACCAATTACACCTTCAGTAACATGTCTCACCTCTCCACTCTGATCCTGAGCTACAACCGGCTGAGGTGCATCCCCGTCCACGCCTTCAACGGGCTGCGGTCCCTGCGAGTGCTAACCCTCCATGGCAATGACATTTCCAGCGTTCCTGAAGGCTCCTTCAACGACCTCACATCTCTTTCCCATCTGGCGCTGGGAACCAACCCACTCCACTGTGACTGCAGTCTTCGGTGGCTGTCGGAGTGGGTGAAGGCGGGGTACAAGGAGCCTGGCATCGCCCGCTGCAGTAGCCCTGAGCCCATGGCTGACAGGCTCCTGCTCACCACCCCAACCCACCGCTTCCAGTGCAAAGTACTCTGGTTTTGCTGCCCAGGGCCAGTGGACATCAACATTGTGGCCAAATGCAATGCCTGCCTCTCCAGCCCGTGCAAGAATAACGGGACATGCACCCAGGACCCTGTGGAGCTGTACCGCTGTGCCTGCCCCTACAGCTACAAGGGCAAGGACTGCACTGTGCCCATCAACACCTGCATCCAGAACCCCTGTCAGCATGGAGGCACCTGCCACCTGAGTGACAGCCACAAGGATGGGTTCAGCTGCTCCTGCCCTCTGGGCTTTGAGGGGCAGCGGTGTGAGATCAACCCAGATGACTGTGAGGACAACGACTGCGAAAACAATGCCACCTGCGTGGACGGGATCAACAACTACGTGTGTATCTGTCCGCCTAACTACACAGGTGAGCTATGCGACGAGGTGATTGACCACTGTGTGCCTGAGCTGAACCTCTGTCAGCATGAGGCCAAGTGCATCCCCCTGGACAAAGGATTCAGCTGCGAGTGTGTCCCTGGCTACAGCGGGAAGCTCTGTGAGACAGACAATGATGACTGTGTGGCCCACAAGTGCCGCCACGGGGCCCAGTGCGTGGACACAATCAATGGCTACACATGCACCTGCCCCCAGGGCTTCAGTGGACCCTTCTGTGAACACCCCCCACCCATGGTCCTACTGCAGACCAGCCCATGCGACCAGTACGAGTGCCAGAACGGGGCCCAGTGCATCGTGGTGCAGCAGGAGCCCACCTGCCGCTGCCCACCAGGCTTCGCCGGCCCCAGATGCGAGAAGCTCATCACTGTCAACTTCGTGGGCAAAGACTCCTACGTGGAACTGGCCTCCGCCAAGGTCCGACCCCAGGCCAACATCTCCCTGCAGGTGGCCACTGACAAGGACAACGGCATCCTTCTCTACAAAGGAGACAATGACCCCCTGGCACTGGAGCTGTACCAGGGCCACGTGCGGCTGGTCTATGACAGCCTGAGTTCCCCTCCAACCACAGTGTACAGTGTGGAGACAGTGAATGATGGGCAGTTTCACAGTGTGGAGCTGGTGACGCTAAACCAGACCCTGAACCTAGTAGTGGACAAAGGAACTCCAAAGAGCCTGGGGAAGCTCCAGAAGCAGCCAGCAGTGGGCATCAACAGCCCCCTCTACCTTGGAGGCATCCCCACCTCCACCGGCCTCTCTGCCTTGCGCCAGGGCACGGACCGGCCTCTAGGCGGCTTCCACGGATGCATCCATGAGGTGCGCATCAACAACGAGCTGCAGGACTTCAAGGCCCTCCCACCACAGTCCCTGGGGGTGTCACCAGGCTGCAAGTCCTGCACCGTGTGCAAGCACGGCCTGTGCCGCTCCGTGGAGAAGGACAGCGTGGTGTGCGAGTGCCGCCCAGGCTGGACCGGCCCACTCTGCGATCAGGAGGCCCGGGACCCCTGCCTCGGCCACAGATGCCACCATGGAAAATGTGTGGCAACTGGGACCTCATACATGTGCAAGTGTGCCGAGGGCTATGGAGGGGACTTGTGTGACAACAAGAATGACTCTGCCAATGCCTGCTCAGCCTTCAAGTGTCACCATGGGCAGTGCCACATCTCAGACCAAGGGGAGCCCTACTGCCTGTGCCAGCCCGGCTTTAGCGGCGAGCACTGCCAACAAGAGAATCCGTGCCTGGGACAAGTAGTCCGAGAGGTGATCCGCCGCCAGAAAGGTTATGCATCATGTGCCACAGCCTCCAAGGTGCCCATCATGGAATGTCGTGGGGGCTGTGGGCCCCAGTGCTGCCAGCCCACCCGCAGCAAGCGGCGGAAATACGTCTTCCAGTGCACGGACGGCTCCTCGTTTGTAGAAGAGGTGGAGAGACACTTAGAGTGCGGCTGCCTCGCGTGTTCCTAA MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITNDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIPSHLPEYVTDLRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLSTINLLSNPFNCNCHLAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCTCMETVVRCSNKGLRALPRGMPKDVTELYLEGNHLTAVPRELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDCSLRWLSEWVKAGYKEPGIARCSSPEPMADRLLLTTPTHRFQCKVLWFCCPGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDKGFSCECVPGYSGKLCETDNDDCVAHKCRHGAQCVDTINGYTCTCPQGFSGPFCEHPPPMVLLQTSPCDQYECQNGAQCIVVQQEPTCRCPPGFAGPRCEKLITVNFVGKDSYVELASAKVRPQANISLQVATDKDNGILLYKGDNDPLALELYQGHVRLVYDSLSSPPTTVYSVETVNDGQFHSVELVTLNQTLNLVVDKGTPKSLGKLQKQPAVGINSPLYLGGIPTSTGLSALRQGTDRPLGGFHGCIHEVRINNELQDFKALPPQSLGVSPGCKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQEARDPCLGHRCHHGKCVATGTSYMCKCAEGYGGDLCDNKNDSANACSAFKCHHGQCHISDQGEPYCLCQPGFSGEHCQQENPCLGQVVREVIRRQKGYASCATASKVPIMECRGGCGPQCCQPTRSKRRKYVFQCTDGSSFVEEVERHLECGCLACS* FALSE FALSE NA NA TRUE hsa-mir-218-2 chr5:168768146-168768255:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33458 PUM2::LDAH ENSG00000055917.17::ENSG00000118961.15 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PUM2 ENSG00000055917.17 protein_coding - - chr2:20248691-20352234:- chr2:20263193:- chr2:20448452-20551995:- chr2:20462954:- LDAH ENSG00000118961.15 protein_coding - - chr2:20684014-20823130:- chr2:20801465:- chr2:20883774-21022890:- chr2:21001225:- chr2:20260411,chr2:20260413 chr2:20803032,chr2:20803031 NA NA chr2:20460172,chr2:20460174 chr2:21002792,chr2:21002791 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"] 9 12 9 11.5 ONLY_REF_SPLICE YES_LDAS 0.2271 GT 1.9899 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Brain no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33460 CASC15::CDKAL1 ENSG00000272168.10::ENSG00000145996.11 5637 SRR8616172 SRR8639140 URINARY_TRACT carcinoma primary star-fusion TRUE TRUE TRUE 2390 FALSE NA FALSE NA CASC15 ENSG00000272168.10 lncRNA + + chr6:21664184-22654455:+ chr6:21909603:+ chr6:21664415-22654684:+ chr6:21909834:+ CDKAL1 ENSG00000145996.11 protein_coding + + chr6:20534457-21232404:+ chr6:20739519:+ chr6:20534688-21232635:+ chr6:20739750:+ chr6:21937122 chr6:20732219 NA NA chr6:21937353 chr6:20732450 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.43Mb] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1108 GT 1.9219 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33463 ILRUN::SPDEF ENSG00000196821.10::ENSG00000124664.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34646601:- chr6:34555065-34664636:- chr6:34614378:- SPDEF ENSG00000124664.11 protein_coding - - chr6:34537802-34556333:- chr6:34544484:- chr6:34505579-34524110:- chr6:34512261:- chr6:34644912,chr6:34644919,chr6:34644923 chr6:34555619,chr6:34555623,chr6:34555623 NA NA chr6:34612689,chr6:34612696,chr6:34612700 chr6:34523396,chr6:34523400,chr6:34523400 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 185 143 185 143 ONLY_REF_SPLICE YES_LDAS 4.1463 GT 1.9899 AG 1.4566 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33464 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2392 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59683756:+ chr17:57697045-57774317:+ chr17:57761117:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ chr17:59683891 chr17:59827926 NA NA chr17:57761252 chr17:57905287 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2^Clathrin|984-1124|1.2e-37^TPR_8|1060-1079|0.83^TPR_14|1093-1118|0.71^Coatomer_WDAD|1094-1168|1.7e-08^TPR_8|1094-1107|4^ANAPC3|1095-1135|0.0042^TPR_19|1096-1130|0.013^TPR_14|1110-1136|0.2^TPR_1|1111-1136|0.00018^TPR_2|1111-1136|0.0018^TPR_8|1112-1136|0.0053^TPR_7|1113-1135|0.02^Clathrin|1134-1272|9e-36^TPR_14|1142-1172|0.031^TPR_7|1152-1170|0.05^TPR_2|1207-1224|3.4^ANAPC3|1226-1252|0.41^TPR_7|1230-1246|0.22^TPR_8|1230-1247|0.23^TPR_1|1231-1247|0.19^TPR_19|1231-1246|6.7^TPR_2|1231-1251|0.51^TPR_14|1232-1252|0.45^Coatomer_WDAD|1238-1310|0.0089^Clathrin|1281-1421|3.5e-33^TPR_14|1288-1326|0.023^TPR_7|1295-1316|0.016^TPR_8|1295-1318|0.46^TPR_8|1360-1383|1.9^TPR_1|1369-1380|2.5^Clathrin|1428-1570|7.4e-36^TPR_14|1540-1564|9.4^TPR_8|1608-1620|7 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 170 128 170 128 ONLY_REF_SPLICE YES_LDAS 3.7671 GT 1.8323 AG 1.8062 ENST00000700709.1 1-4338 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]|[0]59660391-59660588[2]|[0]59661443-59661643[2]|[0]59663842-59663994[2]|[0]59664787-59664909[2]|[0]59666103-59666240[2]|[0]59666480-59666644[2]|[0]59666797-59666977[0]|[1]59668777-59668940[2]|[0]59673647-59673772[2]|[0]59674701-59674843[1]|[2]59676954-59677188[2]|[0]59679397-59679519[2]|[0]59680912-59681057[1]|[2]59681295-59681478[2]|[0]59681647-59681839[0]|[1]59682271-59682428[2]|[0]59682629-59682793[2]|[0]59682907-59683014[2]|[0]59683095-59683262[2]|[0]59683387-59683536[2]|[0]59683625-59683756[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaagttctgtcagtgtgtgtggaagaagaaaacataattccttacatcaccaatgttctacaaaatcctgatttggctctgagaatggctgtacgtaataacttagccggtgctgaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcggaggcagcaaaggtggctgctaatgcaccaaagggaattcttcgtactccagacactatccgtcggttccagagtgtcccagcccagccaggtcaaacttctcctctacttcagtactttggtatccttttggaccagggacagctcaacaaatacgaatccttagagctttgtaggcctgtacttcagcaagggcgaaaacagcttttggagaaatggttaaaagaagataagctggaatgttctgaagaactgggtgatcttgtgaaatctgtggaccctacattggcacttagtgtgtacctaagggctaacgtcccaaataaagtcattcagtgctttgcagaaacaggtcaagtccaaaagattgttttatatgctaaaaaagttggatacactccagattggatatttctgctgagaaatgtaatgcgaatcagtccagatcagggacagcagtttgcccaaatgttagttcaagatgaagagcctcttgctgacatcacacagattgtagatgtctttatggaatacaatctaattcagcagtgtactgcattcttgcttgatgctctgaagaataatcgcccatctgaaggtcctttacagacgcggttacttgagatgaaccttatgcatgcgcctcaagttgcagatgctattctaggcaatcagatgttcacacattatgaccgggctcatattgctcaactgtgtgaaaaggctggcctactgcagcgtgcattagaacatttcactgatttatatgatataaaacgtgcagtggttcacacccatcttcttaaccctgagtggttagtcaactactttggttccttatcagtagaagactccctagaatgtctcagagccatgctgtctgccaacatccgtcagaatctgcagatttgtgttcaggtggcttctaaatatcatgaacaactgtcaactcagtctctgattgaactttttgaatctttcaagagttttgaaggtctcttttattttctgggatccattgttaactttagccaggacccagatgtgcactttaaatatattcaggcagcttgcaagactgggcaaatcaaagaagtagaaagaatctgtagagaaagcaactgctacgatcctgagcgagtcaagaattttcttaaggaagcaaaactaacagatcagctaccacttatcattgtgtgtgatcgatttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatatagagatatatgtacagaaggtgaatccaagtcgacttcctgtagttattggaggattacttgatgttgactgttctgaagatgtcataaaaaacttgattcttgttgtaagaggtcaattctctactgatgagcttgttgctgaggttgaaaaaagaaacagattgaaactgcttctgccttggctagaggccagaattcatgagggctgtgaggagcctgctactcacaatgccttagccaaaatctacatagacagtaataacaacccggagagatttcttcgtgaaaatccctactatgacagtcgcgttgttggaaagtattgtgagaagagagatccacatctggcctgtgttgcttatgaacgtggccaatgtgatctggaacttattaatgtttgcaatgagaattccctcttcaaaagtctttctcgctacctggtacgtcgaaaggatccagaattgtggggcagcgtgctgctggaaagcaatccttacaggagacccctaattgaccaggttgtacaaacagctttgtctgagactcaggaccctgaagaagtgtcagtaactgtaaaggctttcatgactgcagaccttcctaatgaactcattgaactgctggagaaaattgtccttgataactctgtattcagtgaacacaggaatctgcaaaacctccttatcctcactgcaattaaggctgaccgtacacgtgttatggagtatattaaccgcctggataattatgatgccccagatattgccaatatcgccatcagcaatgagctgtttgaagaagcatttgccattttccggaaatttgatgtcaatacttcagcagttcaggtcttaattgagcatattggaaacttggatcgggcatatgagtttgctgaacgttgcaatgaacctgcggtctggagtcaacttgcaaaagcccagttgcagaaaggaatggtgaaagaagccattgattcttatatcaaagcagatgatccttcctcctacatggaagttgttcaggctgccaatactagtggaaactgggaagaactggtgaagtacttgcagatggcccgtaagaaggctcgagagtcctatgtggagacagaactgatattcgcactggctaaaacaaaccgccttgcagagttagaagaatttatcaatggaccaaataatgctcatatccaacaagttggtgaccgttgttatgatgaaaaaatgtatgatgctgctaagttgttgtacaataatgtttccaattttggacgtttggcatctaccctggttcacctgggtgaatatcaggcagctgttgatggggctaggaaagctaacagtactcgaacatggaaagaggtctgcttcgcctgtgtagatgggaaagaattccgtcttgctcagatgtgtggacttcatattgttgtacatgcagatgaattagaagaacttatcaactactatcaggatcgtggctattttgaagagctgatcaccatgttggaagcagcactgggacttgagcgagctcacatgggaatgtttactgaattagctattctatactctaaatttaagcctcagaaaatgagggagcacctggagctgttctggtctagagtgaatattcccaaggtgctaagagctgcagaacaagctcatctttgggcagaactggtgtttttgtatgacaagtatgaagaatatgataatgccataattaccatgatgaatcatccaactgatgcctggaaagaagggcaattcaaagatatcattaccaaggttgccaatgtggaactatactacagagcaatacagttctacttagaattcaagcctctgttgttaaatgatttgctgatggtgctgtctccacggttggatcacactcgtgcagtcaattatttcagcaagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33466 STRADB::NOP58 ENSG00000082146.13::ENSG00000055044.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2395 FALSE NA FALSE NA STRADB ENSG00000082146.13 protein_coding + + chr2:201387858-201480846:+ chr2:201473076:+ chr2:202252581-202345569:+ chr2:202337799:+ NOP58 ENSG00000055044.11 protein_coding + + chr2:202265736-202303661:+ chr2:202297379:+ chr2:203130459-203168384:+ chr2:203162102:+ chr2:201474662,chr2:201474658 chr2:202297149,chr2:202297142 NA NA chr2:202339385,chr2:202339381 chr2:203161872,chr2:203161865 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pkinase-PARTIAL|58-315~|5.3e-40^PK_Tyr_Ser-Thr|63-278|7e-29^Kinase-like|162-218|1.1e-05 none ["Mitelman","Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.78Mb] 98 77 96.61 75.08 ONLY_REF_SPLICE YES_LDAS 2.1704 GT 1.9656 AG 1.9219 ENST00000392249.6 1-315 ENST00000264279.10 1072-1590 chr2|+|[0]201454841-201454852[2]|[0]201458784-201458864[2]|[0]201469953-201470052[0]|[1]201472955-201473076[2]<==>chr2|+|[0]202297379-202297513[2]|[0]202297845-202297906[1]|[2]202300234-202300367[0]|[1]202302921-202303057[2]|[0]202303386-202303436[2] atgtctcttttggattgcttctgcacttcaagaacacaagttgaatcactcagacctgaaaaacagtctgaaaccagtatccatcaatacttggttgatgagccaaccctttcctggtcacgtccatccactagagccagtgaagtactatgttccaccaacgtttctcactatgagctccaagtagaaataggaagaggatttgacaacttgacttctgtccatcttgcacggcatactcccacaggaacactggtaactataaaaattacaaatctggaaaactgcaatgaagaacgcctgaaagctttacagATTTCTCGAATGCTGGCAGCCAAAACCGTTTTGGCTATCCGTTATGATGCTTTTGGTGAGGATTCAAGTTCTGCAATGGGAGTTGAGAACAGAGCCAAATTAGAGGCCAGGTTGAGAACTTTGGAAGACAGAGGGATAAGAAAAATAAGTGGAACAGGAAAAGCATTAGCAAAAACAGAAAAATATGAACACAAAAGTGAAGTGAAGACTTACGATCCTTCTGGTGACTCCACACTTCCAACCTGTTCTAAAAAACGCAAAATAGAACAGGTAGATAAAGAGGATGAAATTACTGAAAAGAAAGCCAAAAAAGCCAAGATTAAAGTTAAAGTTGAAGAAGAGGAAGAAGAAAAAGTGGCAGAAGAAGAAGAAACATCTGTGAAGAAGAAGAAGAAAAGGGGTAAAAAGAAACACATTAAGGAAGAACCACTTTCTGAGGAAGAACCATGTACCAGCACAGCAATTGCTAGTCCAGAGAAAAAGAAGAAAAAGAAAAAAAAGAGAGAGAACGAGGATTAA MSLLDCFCTSRTQVESLRPEKQSETSIHQYLVDEPTLSWSRPSTRASEVLCSTNVSHYELQVEIGRGFDNLTSVHLARHTPTGTLVTIKITNLENCNEERLKALQISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLEDRGIRKISGTGKALAKTEKYEHKSEVKTYDPSGDSTLPTCSKKRKIEQVDKEDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEEPCTSTAIASPEKKKKKKKKRENED* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE STE20-related kinase adapter protein beta STE STE20 STLK Q9C0K7 FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33467 GALNT7::ORC4 ENSG00000109586.12::ENSG00000115947.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2394 FALSE NA FALSE NA GALNT7 ENSG00000109586.12 protein_coding + + chr4:173168811-173323967:+ chr4:173304118:+ chr4:174089962-174245118:+ chr4:174225269:+ ORC4 ENSG00000115947.14 protein_coding - - chr2:147930396-148021604:- chr2:147958866:- chr2:148687965-148779173:- chr2:148716435:- chr4:173308217,chr4:173308222,chr4:173308233,chr4:173308240,chr4:173308243 chr2:147963149,chr2:147963149,chr2:147963149,chr2:147963149,chr2:147963149 NA NA chr4:174229368,chr4:174229373,chr4:174229384,chr4:174229391,chr4:174229394 chr2:148720718,chr2:148720718,chr2:148720718,chr2:148720718,chr2:148720718 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Glycos_transf_2|210-397|1.6e-32^Glyco_tranf_2_3|211-440|1.9e-06^Glyco_transf_7C|378-444|1.6e-10^Ricin_B_lectin|534-649|5.9e-27 ATPase_2-PARTIAL|~226-232|1.1e-10^NACHT-PARTIAL|~226-234|3.8e-07^ORC4_C|228-415|1.7e-59^ABC_tran|247-285|5.6^KAP_NTPase|249-262|2.7^DAP3|253-304|0.51^UvrD-helicase|291-291|1.6^ATPase_2|331-350|1.8^AAA_24|346-364|9.5^AAA_14|358-416|3^ABC_tran|375-411|9.6^AAA_7|379-413|8.2 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr4--chr2] 94 93 94 93 ONLY_REF_SPLICE YES_LDAS 2.3639 GT 1.9329 AG 1.7056 ENST00000505308.6 1-1389 ENST00000392857.10 226-1311 chr4|+|[0]173168836-173168961[2]|[0]173247980-173248440[1]|[2]173292108-173292274[0]|[1]173295396-173295526[2]|[0]173295764-173295843[1]|[2]173297795-173297977[1]|[2]173302047-173302164[2]|[0]173303996-173304118[2]<==>chr2|-|[2]147935510-147935698[0]|[2]147938146-147938213[1]|[0]147938298-147938393[1]|[0]147939140-147939248[0]|[2]147943436-147943522[0]|[2]147948051-147948224[0]|[2]147952373-147952524[1]|[0]147955347-147955395[0]|[2]147958298-147958383[1]|[0]147958791-147958866[0] atgaggctgaagattgggttcatcttacgcagtttgctggtggtgggaagcttcctggggctagtggtcctctggtcttccctgaccccgcggccggacgacccaagcccgctgagcaggatgagggaagacagagatgtcaatgaccccatgcccaaccgaggcggcaatggactagctcctggggaggacagattcaaacctgtggtaccatggcctcatgttgaaggagtagaagtggacttagagtctattagaagaataaacaaggccaaaaatgaacaagagcaccatgctggaggagattcccagaaagatatcatgcagaggcagtatctcacatttaagcctcagacattcacctaccatgatcctgtgcttcgcccagggatcctcggtaactttgaacccaaagaacctgagcctcctggagtggttggtggccctggagagaaagccaagccattggttttgggaccagaattcaaacaagcaattcaagccagcattaaagagtttggatttaacatggtggcaagtgacatgatctcactggaccgcagcgtcaatgacttacgccaagaagaatgcaagtattggcattatgatgaaaacttgctcacttcgagcgttgtcattgtcttccataatgaaggatggtcaaccctcatgagaacagtccacagtgtaattaaaaggactccaaggaaatatttagcagaaattgtgttaattgacgatttcagtaataaagaacacttaaaagaaaaactggatgaatatattaagctgtggaatggcctagtgaaggtatttcgaaatgaaagaagggaaggtttaattcaagcacgaagtattggtgctcagaaggctaaacttggacaggttttgatataccttgatgcccactgtgaggtggcagttaactggtatgcaccacttgtagctcccatatctaaggacagaactacatgtactgtgcctctaatagattacatagatgggaatgattattccattgaaccacagcaaggtggggatgaagatggttttgccagaggggcctgggactggagtttactatggaaacgtattcctctaagccacaaggaaaaggccaaaagaaaacataaaactgaaccttatcggtccccagccatggctgggggattatttgccattgaacgagagttcttctttgaattgggtctctatgatccaggtctccagatttggggtggtgaaaactttgagatctcatacaagatatggcagtgtggtggcaaattattatttgttccttgttctcgtgttggacatatctaccgtcttgagggctggcaaggaaatcctccgcccatttatgttgggtcttctccaactctgaagTTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATGTATTACAAGTTCACTTAAATGGACTGCTGCAGATCAATGACAAAATCGCCCTAAAGGAAATCACAAGGCAGTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTTGGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTAAAAAAAGGTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATAAAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAATAGCAGTTATTGGTCTTACATGTAGATTGGATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCAAGATTTTCTCACCGGCAGATACACTTAATGAATTCATTTGGTTTTCCACAGTATGTTAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAGTTTCCAGACAAGGTTTTTGCTGAGAAGTGGAATGAAAATGTTCAGTATCTCTCAGAAGATAGAAGTGTGCAAGAAGTACTACAGAAGCATTTCAATATCAGCAAAAACCTGCGGTCATTACACATGCTATTGATGCTTGCTTTAAATCGAGTAACAGCATCGCACCCATTTATGACTGCCGTAGATCTAATGGAAGCAAGCCAACTGTGTAGCATGGACTCGAAAGCAAATATTGTACATGGTCTATCAGTCTTGGAAATCTGTCTTATAATAGCAATGAAACATTTAAATGACATCTATGAGGAAGAGCCATTTAATTTTCAAATGGTCTATAATGAGTTTCAGAAGTTTGTTCAAAGGAAAGCACATTCCGTTTATAATTTTGAAAAACCTGTTGTCATGAAGGCTTTTGAACACTTGCAGCAATTAGAATTAATAAAGCCCATGGAAAGAACTTCAGGAAATTCACAGAGAGAGTACCAGCTGATGAAACTGCTTTTGGATAATACTCAAATTATGAATGCTCTGCAGAAATATCCCAACTGTCCTACAGATGTGAGGCAGTGGGCAACATCCTCACTAAGCTGGTTATGA MRLKIGFILRSLLVVGSFLGLVVLWSSLTPRPDDPSPLSRMREDRDVNDPMPNRGGNGLAPGEDRFKPVVPWPHVEGVEVDLESIRRINKAKNEQEHHAGGDSQKDIMQRQYLTFKPQTFTYHDPVLRPGILGNFEPKEPEPPGVVGGPGEKAKPLVLGPEFKQAIQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTTCTVPLIDYIDGNDYSIEPQQGGDEDGFARGAWDWSLLWKRIPLSHKEKAKRKHKTEPYRSPAMAGGLFAIEREFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQGNPPPIYVGSSPTLKLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLLEALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRFSHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLHMLLMLALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVYNEFQKFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNALQKYPNCPTDVRQWATSSLSWL* FALSE TRUE hsa-mir-548t chr4:173268160-173268233:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33468 GSDMC::PVT1 ENSG00000147697.9::ENSG00000249859.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GSDMC ENSG00000147697.9 protein_coding - - chr8:129748196-129786624:- chr8:129762626:- chr8:130760442-130798870:- chr8:130774872:- PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:128100980:+ chr8:128806772-129199347:+ chr8:129113226:+ chr8:129761091,chr8:129761778,chr8:129761778,chr8:129761778,chr8:129761101 chr8:128099730,chr8:128099704,chr8:128099659,chr8:128099646,chr8:128099720 NA NA chr8:130773337,chr8:130774024,chr8:130774024,chr8:130774024,chr8:130773347 chr8:129111976,chr8:129111950,chr8:129111905,chr8:129111892,chr8:129111966 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:1.65Mb] 46 22 46 22 ONLY_REF_SPLICE YES_LDAS 0.8596 GT 1.7465 AG 1.5546 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-1208 chr8:128150116-128150188:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33469 OXR1::CASC19 ENSG00000164830.19::ENSG00000254166.4 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA OXR1 ENSG00000164830.19 protein_coding + + chr8:106270144-106752694:+ chr8:106658185:+ chr8:107282372-107764922:+ chr8:107670413:+ CASC19 ENSG00000254166.4 lncRNA - - chr8:127072694-127227541:- chr8:127079133:- chr8:128084939-128239786:- chr8:128091378:- chr8:106673111,chr8:106673107 chr8:127115282,chr8:127115286 NA NA chr8:107685339,chr8:107685335 chr8:128127527,chr8:128127531 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:20.43Mb] 28 53 28 52.73 ONLY_REF_SPLICE YES_LDAS 1.0206 GT 1.6895 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33470 INPP5A::PWWP2B ENSG00000068383.19::ENSG00000171813.14 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 2396 FALSE NA FALSE NA INPP5A ENSG00000068383.19 protein_coding + + chr10:132537787-132783480:+ chr10:132607956:+ chr10:134351291-134596984:+ chr10:134421460:+ PWWP2B ENSG00000171813.14 protein_coding + + chr10:132397168-132417859:+ chr10:132417061:+ chr10:134210672-134231363:+ chr10:134230565:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Exo_endo_phos|16-51|0.6^Glyco_hydro_cc|28-77|2.7e-05^OLF-PARTIAL|69-117~|4.7e-06 none ["DepMap2023"];INTRACHROMOSOMAL[chr10:0.12Mb] 26 3 26 3 ONLY_REF_SPLICE YES_LDAS 0.3666 GT 1.9899 AG 1.9329 ENST00000368593.7 1-117 ENST00000631148.2 1487-1500 chr10|+|[0]132538097-132538171[2]|[0]132607915-132607956[2]<==>chr10|+|[1]132417061-132417074[2] atggcggggaaggcggccgccccgggcaccgcggtgctgctggtcacggccaacgtgggctcgctcttcgacgacccagaaaacctgcagaagaactggcttcgggaattttaccagGTCACCGACGATGA MAGKAAAPGTAVLLVTANVGSLFDDPENLQKNWLREFYQVTDD FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33471 CCDC57::LINC00511 ENSG00000176155.21::ENSG00000227036.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA CCDC57 ENSG00000176155.21 protein_coding - - chr17:82101460-82212878:- chr17:82201672:- chr17:80059336-80170754:- chr17:80159548:- LINC00511 ENSG00000227036.10 lncRNA - - chr17:72290091-72640472:- chr17:72431224:- chr17:70286232-70636611:- chr17:70427365:- chr17:82201640,chr17:82201643 chr17:72445575,chr17:72445575 NA NA chr17:80159516,chr17:80159519 chr17:70441715,chr17:70441715 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:9.46Mb] 19 21 19 21 INCL_NON_REF_SPLICE YES_LDAS 0.5057 GT 1.4566 AG 1.5329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33472 HARBI1::AMBRA1 ENSG00000180423.4::ENSG00000110497.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2399 FALSE NA FALSE NA HARBI1 ENSG00000180423.4 protein_coding - - chr11:46602861-46617909:- chr11:46617124:- chr11:46624411-46639459:- chr11:46638674:- AMBRA1 ENSG00000110497.15 protein_coding - - chr11:46396414-46594125:- chr11:46494204:- chr11:46417964-46615675:- chr11:46515754:- chr11:46616497,chr11:46616504 chr11:46499601,chr11:46499605 NA NA chr11:46638047,chr11:46638054 chr11:46521151,chr11:46521155 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.01Mb];NEIGHBORS[8736] 17 1 17 1 ONLY_REF_SPLICE YES_LDAS 0.2275 GT 1.4566 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-3160-1 chr11:46451805-46451889:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33474 TRMT11::NCOA7 ENSG00000066651.20::ENSG00000111912.20 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2401 FALSE NA FALSE NA TRMT11 ENSG00000066651.20 protein_coding + + chr6:125986479-126203817:+ chr6:125998684:+ chr6:126307625-126524963:+ chr6:126319830:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125878263:+ chr6:126102307-126253180:+ chr6:126199409:+ chr6:125999324,chr6:125999322 chr6:125877560,chr6:125877555 NA NA chr6:126320470,chr6:126320468 chr6:126198706,chr6:126198701 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UPF0020|190-226|1.8e-05 SUIM_assoc|748-766|0.27^LysM|804-833|0.28^TLD|806-941|7.2e-43 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.05Mb];LOCAL_REARRANGEMENT:+:[54400] 11 8 11 8 ONLY_REF_SPLICE YES_LDAS 0.2402 GT 1.5058 AG 1.8256 ENST00000648977.1 1-522 ENST00000368357.7 352-2829 chr6|+|[0]125986551-125986622[2]|[0]125993757-125993822[2]|[0]125995967-125996040[1]|[2]125998053-125998134[2]|[0]125998223-125998315[2]|[0]125998550-125998684[2]<==>chr6|+|[0]125878263-125878370[2]|[0]125881090-125881203[2]|[0]125882426-125882551[2]|[0]125885159-125885343[1]|[2]125888939-125889981[0]|[1]125890642-125890810[1]|[2]125915333-125915480[2]|[0]125920943-125921068[2]|[0]125922682-125922834[2]|[0]125927663-125927758[2]|[0]125928174-125928247[1]|[2]125928636-125928771[2] atggcgctgtcgtgtacccttaacaggtatctgctcctcatggcgcaggagcatctggagttccgcctgccggaaataaagtctttgcttttgctttttggaggtcagtttgccagcagtcaagaaacttatggaaagtcaccattttggattcttagcattccctctgaagatattgcaagaaatttgatgaaacggacagtgtgtgccaagtctatatttgaactatggggtcatggacaatctcctgaggagctgtacagttctcttaaaaactaccctgtggagaagatggttccatttctacattcggactctacatataaaataaagattcacacttttaataagacattgacacaagaagagaaaatcaagcgaatagatgcacttgaatttctgccatttgaaggaaaagtgaatttaaagaaaccgcaacatgtattttctgttttggaggattatggtttagacccaaactgcatccctgagaatccacataatatttattttggtagatggGCTGGAAACCAGGACACCCTAAACTCCATAGCACTGAAATTTAACATCACTCCCAATAAATTGGTGGAACTGAATAAACTTTTCACACATACTATTGTTCCAGGCCAGGTCCTTTTTGTGCCAGATGCCAACTCTCCTTCCAGTACCTTAAGGCTATCATCATCCAGTCCTGGTGCTACTGTCTCTCCTTCATCATCAGATGCAGAATATGATAAATTGCCTGATGCTGACTTAGCACGAAAGGCCTTGAAACCCATTGAAAGAGTCTTATCGTCTACTTCTGAAGAAGATGAGCCAGGTGTGGTGAAATTTTTAAAAATGAATTGTCGATACTTCACCGATGGAAAGGGTGTGGTTGGCGGTGTTATGATAGTGACTCCTAACAACATCATGTTTGACCCTCATAAATCTGATCCTCTGGTTATTGAAAATGGGTGTGAGGAGTATGGTCTCATCTGCCCCATGGAAGAGGTTGTTTCCATTGCGCTCTACAATGACATTTCTCACATGAAGATCAAAGATGCCTTGCCATCTGACCTACCTCAGGATCTTTGTCCTCTGTACAGGCCTGGAGAATGGGAAGACCTGGCTTCAGAAAAGGATATCAACCCATTCAGTAAGTTCAAATCTATCAACAAGGAAAAACGACAGCAGAATGGAGAGAAAATTATGACTTCGGATTCCAGACCAATAGTACCTTTGGAGAAGTCCACAGGACATACACCTACAAAGCCCTCAGGCAGCTCTGTGTCAGAGAAATTAAAGAAACTGGACTCCTCTAGGGAGACATCCCATGGTTCTCCCACAGTGACTAAGCTCAGCAAGGAACCTTCCGACACTTCTTCTGCATTTGAATCTACAGCCAAAGAAAACTTTCTAGGGGAAGATGATGATTTTGTTGACTTGGAAGAACTTTCTTCTCAAACTGGTGGTGGAATGCACAAAAAAGACACCTTGAAGGAGTGCCTTTCTCTTGACCCAGAGGAACGAAAGAAAGCTGAGTCACAAATAAACAATTCTGCCGTGGAAATGCAGGTGCAGTCAGCCCTAGCCTTTTTGGGAACAGAGAATGATGTTGAACTGAAGGGGGCGCTAGATTTAGAAACCTGTGAGAAGCAAGATATAATGCCAGAAGTGGACAAGCAGTCTGGTTCGCCAGAAAGCCGAGTAGAAAACACACTGAACATACATGAAGATTTAGATAAAGTTAAACTCATTGAATATTACCTGACTAAGAACAAAGAAGGGCCACAGGTATCTGAAAATTTGCAGAAAACAGAATTAAGTGATGGAAAAAGTATTGAACCAGGGGGAATAGACATTACCCTTAGTAGTTCTCTTTCCCAGGCGGGTGATCCCATAACTGAGGGCAATAAAGAGCCAGATAAGACCTGGGTGAAAAAGGGAGAGCCCCTCCCGGTAAAACTGAACTCTTCTACAGAAGCAAATGTGATTAAAGAGGCTCTAGACTCCTCTTTGGAATCTACTCTGGACAACAGCTGTCAAGGTGCACAAATGGATAATAAATCTGAAGTTCAGTTGTGGCTGTTAAAGAGAATTCAGGTACCCATTGAAGATATACTTCCTTCAAAAGAAGAAAAAAGCAAGACCCCACCCATGTTCCTGTGCATCAAAGTGGGAAAACCAATGAGAAAATCCTTTGCCACTCACACTGCAGCCATGGTCCAGCAGTACGGCAAACGGAGAAAGCAGCCAGAGTACTGGTTTGCTGTTCCTCGGGAGAGGGTGGATCATTTGTACACATTCTTTGTTCAGTGGTCTCCCGATGTCTATGGAAAAGATGCCAAAGAGCAAGGCTTTGTGGTGGTGGAGAAGGAAGAACTGAACATGATTGACAACTTCTTCAGTGAGCCAACAACCAAGAGCTGGGAGATCATCACTGTTGAAGAGGCAAAGCGCAGGAAGAGCACATGCAGCTACTATGAAGACGAGGACGAAGAGGTGCTGCCTGTCCTACGGCCCCACAGCGCGCTCCTGGAGAATATGCACATCGAGCAGCTGGCCCGACGCCTTCCTGCAAGGGTGCAAGGGTATCCATGGAGACTGGCCTATAGCACGTTAGAGCACGGGACCAGCTTAAAGACGCTCTACCGGAAATCGGCATCACTAGACAGTCCTGTCCTATTGGTCATCAAAGATATGGATAATCAGATTTTTGGAGCATATGCAACTCATCCTTTCAAGTTCAGTGACCACTATTATGGCACAGGCGAAACTTTTCTCTACACATTCAGCCCTCATTTTAAGGTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATCAATGGAGACATAAGTTCTTTAGAACTTGGTGGTGGAGGGGGACGATTTGGTTTATGGCTAGATGCTGATTTATACCACGGACGAAGCAACTCTTGCAGCACTTTCAATAATGATATTCTTTCCAAAAAGGAAGACTTCATAGTTCAGGATCTGGAGGTGTGGGCATTTGATTGA MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIARNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLTQEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWAGNQDTLNSIALKFNITPNKLVELNKLFTHTIVPGQVLFVPDANSPSSTLRLSSSSPGATVSPSSSDAEYDKLPDADLARKALKPIERVLSSTSEEDEPGVVKFLKMNCRYFTDGKGVVGGVMIVTPNNIMFDPHKSDPLVIENGCEEYGLICPMEEVVSIALYNDISHMKIKDALPSDLPQDLCPLYRPGEWEDLASEKDINPFSKFKSINKEKRQQNGEKIMTSDSRPIVPLEKSTGHTPTKPSGSSVSEKLKKLDSSRETSHGSPTVTKLSKEPSDTSSAFESTAKENFLGEDDDFVDLEELSSQTGGGMHKKDTLKECLSLDPEERKKAESQINNSAVEMQVQSALAFLGTENDVELKGALDLETCEKQDIMPEVDKQSGSPESRVENTLNIHEDLDKVKLIEYYLTKNKEGPQVSENLQKTELSDGKSIEPGGIDITLSSSLSQAGDPITEGNKEPDKTWVKKGEPLPVKLNSSTEANVIKEALDSSLESTLDNSCQGAQMDNKSEVQLWLLKRIQVPIEDILPSKEEKSKTPPMFLCIKVGKPMRKSFATHTAAMVQQYGKRRKQPEYWFAVPRERVDHLYTFFVQWSPDVYGKDAKEQGFVVVEKEELNMIDNFFSEPTTKSWEIITVEEAKRRKSTCSYYEDEDEEVLPVLRPHSALLENMHIEQLARRLPARVQGYPWRLAYSTLEHGTSLKTLYRKSASLDSPVLLVIKDMDNQIFGAYATHPFKFSDHYYGTGETFLYTFSPHFKVFKWSGENSYFINGDISSLELGGGGGRFGLWLDADLYHGRSNSCSTFNNDILSKKEDFIVQDLEVWAFD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung,Uterus_corpus no_match TRUE Lung adenocarcinoma LUNG no_match 126342426|126314968|126334247|126342426 FALSE|FALSE|FALSE|FALSE 126242089|126242089|126243828|126249320 FALSE|FALSE|FALSE|FALSE PARTIALLY In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33475 ATRN::VPS16 ENSG00000088812.18::ENSG00000215305.10 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2400 FALSE NA FALSE NA ATRN ENSG00000088812.18 protein_coding + + chr20:3471018-3651118:+ chr20:3584880:+ chr20:3451665-3631765:+ chr20:3565527:+ VPS16 ENSG00000215305.10 protein_coding + + chr20:2840703-2866732:+ chr20:2859719:+ chr20:2821349-2847378:+ chr20:2840365:+ chr20:3590534 chr20:2848299 NA NA chr20:3571181 chr20:2828945 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Laminin_EGF|101-134|9.2e-06^EGF|101-127|1.4e-05^EGF_2|101-129|6e-06^CUB|132-245|4.7e-16^Kelch_5|173-189|0.53^Kelch_6|182-195|5.1^Laminin_EGF|250-287|0.027^EGF|250-280|2.9e-06^EGF_2|250-282|5.9e-05^EGF_2|287-318|0.026^EGF|295-315|8.5^Laminin_EGF|297-319|7.4^Kelch_3|333-348|2.3^Kelch_1|340-382|5e-09^Kelch_5|340-374|0.02^Kelch_4|340-379|0.00019^Kelch_2|340-379|0.037^Kelch_6|348-380|0.028^Kelch_3|353-399|5.2e-05^Kelch_5|391-426|2.5e-08^Kelch_1|392-436|0.00035^Kelch_6|392-436|5.4e-09^Kelch_2|392-413|0.00093^Kelch_4|396-431|0.019^Kelch_3|402-449|0.07^Kelch_6|452-488|2^Kelch_1|472-490|0.0017^Kelch_2|473-489|0.16^Kelch_3|475-508|7.4e-06^Kelch_4|475-491|0.17^Kelch_5|501-541|0.00032^Kelch_4|501-548|2.3e-05^Kelch_6|513-546|0.00032^Kelch_1|514-548|0.0003^Kelch_3|514-559|9.9e-06^Kelch_2|514-548|0.032^Kelch_6|553-604|0.0024^Kelch_1|554-604|1.3e-07^Kelch_5|554-576|0.00018^Kelch_4|554-601|0.0014^Kelch_2|554-606|1.6e-05^Kelch_3|564-603|0.055^EGF|580-588|1.5^Kelch_1|614-643|1.5e-06^Kelch_5|614-644|1.9e-06^Kelch_4|614-643|8.8e-05^Kelch_6|614-642|0.0011^Kelch_2|614-643|0.00086^Kelch_3|623-644|0.0091^Laminin_EGF|646-666|7.3^PSI|647-681|1.7e-06^PSI_integrin|647-668|1.6^PSI|703-739|1.8e-06^PSI_integrin|703-735|0.0023^PSI|756-782|0.0001^PSI_integrin|756-773|0.06^EGF|907-916|6.1^EGF_2|908-929|1.1^PSI_integrin|932-954|0.0036^PSI|933-983|1.6e-10^PSI|986-1018|2.2e-08^PSI_integrin|986-1016|2.9e-06^EGF_2|1011-1018|3.8^Laminin_EGF|1063-1106|1.1e-06^EGF_2|1063-1089|1.3^EGF_2|1079-1099|3^Laminin_EGF|1109-1142|4.7e-05^EGF_2|1118-1137|0.02 Vps16_N-PARTIAL|~54-420|6e-173^Vps16_C|517-835|2.6e-149 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.60Mb] 11 11 11 11 ONLY_REF_SPLICE YES_LDAS 0.2782 GT 1.9086 AG 1.8062 ENST00000446916.2 1-3184 ENST00000380445.8 54-2520 chr20|+|[0]3471108-3471517[1]|[2]3535253-3535336[1]|[2]3540222-3540335[1]|[2]3545762-3545890[1]|[2]3547284-3547489[0]|[1]3549170-3549338[1]|[2]3559393-3559483[2]|[0]3560662-3560905[0]|[1]3562276-3562459[1]|[2]3563209-3563363[0]|[1]3565348-3565432[1]|[2]3572731-3572951[0]|[1]3575827-3575948[2]|[0]3576859-3576997[0]|[1]3578582-3578772[2]|[0]3582135-3582354[0]|[1]3583898-3584083[0]|[1]3584647-3584880[0]<==>chr20|+|[2]2859719-2859807[0]|[1]2860054-2860151[2]|[0]2860239-2860367[2]|[0]2860449-2860593[0]|[1]2860748-2860863[2]|[0]2860970-2861092[2]|[0]2861225-2861280[1]|[2]2861615-2861704[1]|[2]2861805-2861899[0]|[1]2862054-2862130[2]|[0]2862579-2862710[2]|[0]2862807-2862934[1]|[2]2863065-2863100[1]|[2]2863290-2863398[2]|[0]2863949-2864083[2]|[0]2864179-2864287[0]|[1]2864365-2864462[2]|[0]2864547-2864654[2]|[0]2864978-2865055[2]|[0]2865148-2865317[1]|[2]2865399-2865495[2]|[0]2866212-2866315[1]|[2]2866430-2866574[2] atggtggctgcagcggcggcaactgaggcaaggctgaggaggaggacggcggcgacggcagcgctcgcgggcaggagcggcgggccgcactgggactgggacgtgaccagggctgggaggccggggctgggggccgggctgcgcctcccgcggctgctgtctccaccgctgcggccacggctgctgctgctgctgttgttgctctcgccgccgctgctgctgctgctgctgccctgtgaggccgaggccgcggcggcggcggcggcggtgtcgggctcagccgcagccgaggccaaggaatgtgaccggccctgtgtcaacggcggtcgctgcaaccctggcaccggccagtgcgtctgccccgccggctgggtgggcgagcaatgccagcactgcgggggccgcttcagactaactggatcttctgggtttgtgacagatggacctggaaattataaatacaaaacgaagtgcacgtggctcattgaaggacagccaaatagaataatgagacttcgtttcaatcattttgctacagagtgtagttgggaccatttatatgtttatgatggggactcaatttatgcaccgctagttgctgcatttagtggcctcattgttcctgagagagatggcaatgagactgtccctgaggttgttgccacatcaggttatgccttgctgcatttttttagtgatgctgcttataatttgactggatttaatattacttacagttttgatatgtgtccaaataactgctcaggccgaggagagtgtaagatcagtaatagcagcgatactgttgaatgtgaatgttctgaaaactggaaaggtgaagcatgtgacattcctcactgtacagacaactgtggttttcctcatcgaggcatctgcaattcaagtgatgtcagaggatgctcctgcttctcagactggcagggtcctggatgttcagttcctgtaccagctaaccagtcattttggactcgagaggaatattctaacttaaagctccccagagcatctcataaagctgtggtcaatggaaacattatgtgggttgttggaggatatatgttcaaccactcagattataacatggttctagcgtatgaccttgcttctagggagtggcttccactaaaccgttctgtgaacaatgtggttgttagatatggtcattctttggcattatacaaggataaaatttacatgtatggaggaaaaattgattcaactgggaatgtgaccaatgagttgagagtttttcacattcataatgagtcatgggtgttgttgacccctaaggcaaaggagcagtatgcagtggttgggcactctgcacacattgttacactgaagaatggccgagtggtcatgctggtcatctttggtcactgccctctctatggatatataagcaatgtgcaggaatatgatttggataagaacacatggagtatattacacacccagggtgcccttgtgcaagggggttacggccatagcagtgtttacgaccataggaccagggccctatacgttcatggtggctacaaggctttcagtgccaataagtaccggcttgcagatgatctctaccgatatgatgtggatacccagatgtggaccattcttaaggacagccgatttttccgttacttgcacacagctgtgatagtgagtggaaccatgctggtgtttggaggaaacacacacaatgacacatctatgagccatggcgccaaatgcttctcttcagatttcatggcctatgacattgcctgtgaccgctggtcagtgcttcccagacctgatctccaccatgatgtcaacagatttggccattcagcagtcttacacaacagcaccatgtatgtgttcggtggtttcaatagtctcctcctcagcgacatcctggtattcacctcggaacagtgtgatgcgcatcggagtgaagccgcttgtttagcagcaggacctggtattcggtgtgtgtggaacacagggtcgtctcagtgtatctcgtgggcgctggcaactgatgaacaagaagaaaagttaaaatcagaatgtttttccaaaagaactcttgaccatgacagatgtgaccagcacacagattgttacagctgcacagccaacaccaatgactgccactggtgcaatgaccattgtgtccccaggaaccacagctgctcagaaggccagatctccatttttaggtatgagaattgccccaaggataaccccatgtactactgtaacaagaagaccagctgcaggagctgtgccctggaccagaactgccagtgggagccccggaatcaggagtgcattgccctgcccgaaaatatctgtggcattggctggcatttggttggaaactcatgtttgaaaattactactgccaaggagaattatgacaatgctaaattgttctgtaggaaccacaatgcccttttggcttctcttacaacccagaagaaggtagaatttgtccttaagcagctgcgaataatgcagtcatctcagagcatgtccaagctcaccttaaccccatgggtcggccttcggaagatcaatgtgtcctactggtgctgggaagatatgtccccatttacaaatagtttactacagtggatgccgtctgagcccagtgatgctggattctgtggaattttatcagaacccagtactcggggactgaaggctgcaacctgcatcaacccactcaatggtagtgtctgtgaaaggcctgcaaaccacagtgctaagcagtgccggacaccatgtgccttgaggacagcatgtggagattgcaccagcggcagctctgagtgcatgtggtgcagcaacatgaagcagtgtgtggactccaatgcctacgtggcctccttcccttttggccagtgtatggaatggtatacgatgagcacctgcccccctgaaaattgttcaggctactgtacctgtagtcattgcttggagcaaccaggctgtggctggtgtactgatcccagcaatactggcaaagggaaatgcatagagggttcctataaaggaccagtgaagatgccttcgcaagcccctacaggaaatttctatccacagcccctgctcaattccagcatgtgtctagaggacagcagatacaactggtctttcattcactgtccagGAAATATGAGCTGTACAGCATGGACTGGGACCTGAAGGAGGAACTCAGGGATTGCCTGGTGGCTGCTGCACCCTATGGGGGCCCCATTGCACTGCTGAGGAACCCCTGGCGGAAGGAGAAAGCTGCTAGTGTGAGGCCAGTGCTCGATATATACTCTGCTTCCGGCATGCCTCTGGCCAGCCTGCTGTGGAAGAGTGGACCCGTGGTGTCCCTGGGCTGGTCAGCTGAGGAGGAGCTGCTCTGTGTGCAGGAAGATGGTGCTGTACTGGTTTATGGGCTTCATGGTGACTTCCGGAGACACTTCAGCATGGGCAATGAAGTGCTCCAGAACCGGGTTCTGGATGCCCGGATCTTTCACACTGAGTTTGGTTCCGGAGTGGCCATCCTCACAGGGGCCCACCGCTTCACCCTCAGTGCCAATGTGGGTGACCTCAAACTCCGCCGGATGCCAGAGGTGCCAGGTCTGCAAAGTGCACCCTCCTGCTGGACTGTGCTGTGCCAGGACCGAGTGGCACACATTCTTCTGGCTGTGGGGCCTGACCTTTACCTCTTGGACCATGCAGCCTGCTCCGCAGTGACGCCCCCTGGCCTGGCCCCAGGAGTAAGCAGCTTCCTACAGATGGCTGTCTCCTTCACCTACCGACACCTGGCACTCTTCACAGACACAGGCTACATCTGGATGGGGACAGCATCACTCAAGGAGAAGCTATGTGAGTTCAACTGCAACATCCGGGCACCTCCAAAGCAGATGGTCTGGTGCAGCCGTCCTCGTAGCAAGGAGAGGGCCGTGGTGGTGGCCTGGGAAAGGCGGCTGATGGTGGTGGGCGATGCACCCGAGAGCATCCAGTTTGTGCTGGATGAGGACTCCTACCTGGTGCCTGAGCTCGATGGGGTCCGCATCTTCTCCCGCAGCACCCACGAGTTCCTGCATGAGGTTCCAGCGGCCAGCGAGGAAATCTTCAAAATTGCCTCAATGGCCCCCGGGGCGCTGCTCCTGGAGGCTCAGAAGGAGTATGAGAAAGAGAGCCAGAAGGCGGACGAGTACCTGCGGGAGATCCAGGAGCTGGGCCAGCTGACCCAGGCCGTGCAGCAGTGCATTGAGGCTGCAGGACATGAGCACCAGCCAGACATGCAGAAGAGTCTGCTCAGGGCCGCCTCCTTCGGAAAGTGTTTCCTGGACAGATTTCCACCCGACAGCTTCGTGCACATGTGTCAGGACCTGCGTGTGCTCAATGCTGTTCGGGACTATCACATCGGGATCCCGCTCACCTATAGCCAATATAAGCAGCTCACCATCCAGGTGCTGCTGGACAGGCTCGTGTTGCGGAGACTTTACCCCCTGGCCATCCAGATATGCGAGTACTTGCGCCTTCCTGAAGTACAGGGCGTCAGCAGGATCCTGGCCCACTGGGCCTGCTACAAGGTGCAACAGAAGGATGTCTCAGATGAGGATGTGGCTCGAGCCATTAACCAGAAGCTGGGGGACACGCCTGGTGTCTCTTACTCCGACATTGCTGCACGAGCCTATGGTTGTGGCCGCACGGAGCTGGCCATCAAGCTGCTGGAGTATGAGCCACGCTCAGGGGAGCAGGTACCCCTTCTCCTAAAGATGAAGAGGAGCAAACTGGCACTAAGCAAGGCCATCGAGAGCGGGGACACTGACCTGGTGTTCACGGTGTTGCTGCACCTGAAGAACGAGCTGAACCGAGGAGATTTTTTCATGACCCTTCGGAATCAGCCCATGGCCCTCAGTTTGTACCGACAGTTCTGTAAGCATCAGGAGCTAGAGACGCTGAAGGACCTTTACAATCAGGATGACAATCACCAGGAATTGGGCAGCTTCCACATCCGAGCCAGCTATGCTGCAGAAGAGCGTATTGAGGGGCGAGTAGCAGCTCTGCAGACAGCCGCCGATGCCTTCTACAAGGCCAAGAATGAGTTTGCAGCCAAGGCTACAGAGGATCAAATGCGGCTCCTACGGCTGCAGCGGCGCCTAGAAGACGAGCTGGGGGGCCAGTTCCTAGACCTGTCTCTACATGACACAGTTACCACCCTCATTCTTGGCGGTCACAACAAGCGTGCAGAGCAGCTGGCACGTGACTTCCGCATCCCTGACAAGAGGCTCTGGTGGCTGAAGCTGACTGCCCTGGCAGATTTGGAAGATTGGGAAGAGCTAGAGAAGTTTTCCAAGAGCAAGAAATCACCCATTGGCTACCTGCCTTTTGTGGAGATCTGCATGAAACAACATAACAAATACGAAGCCAAGAAGTATGCTTCCCGCGTGGGTCCCGAGCAGAAGGTCAAGGCTTTGCTTCTTGTTGGCGATGTGGCTCAGGCTGCAGATGTGGCCATCGAACACCGGAATGAGGCTGAGCTGAGCCTCGTATTGTCCCACTGCACGGGAGCCACAGATGGGGCCACAGCTGACAAGATTCAACGGGCCAGGGCACAAGCCCAGAAGAAGTGA MVAAAAATEARLRRRTAATAALAGRSGGPHWDWDVTRAGRPGLGAGLRLPRLLSPPLRPRLLLLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAGWVGEQCQHCGGRFRLTGSSGFVTDGPGNYKYKTKCTWLIEGQPNRIMRLRFNHFATECSWDHLYVYDGDSIYAPLVAAFSGLIVPERDGNETVPEVVATSGYALLHFFSDAAYNLTGFNITYSFDMCPNNCSGRGECKISNSSDTVECECSENWKGEACDIPHCTDNCGFPHRGICNSSDVRGCSCFSDWQGPGCSVPVPANQSFWTREEYSNLKLPRASHKAVVNGNIMWVVGGYMFNHSDYNMVLAYDLASREWLPLNRSVNNVVVRYGHSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLLTPKAKEQYAVVGHSAHIVTLKNGRVVMLVIFGHCPLYGYISNVQEYDLDKNTWSILHTQGALVQGGYGHSSVYDHRTRALYVHGGYKAFSANKYRLADDLYRYDVDTQMWTILKDSRFFRYLHTAVIVSGTMLVFGGNTHNDTSMSHGAKCFSSDFMAYDIACDRWSVLPRPDLHHDVNRFGHSAVLHNSTMYVFGGFNSLLLSDILVFTSEQCDAHRSEAACLAAGPGIRCVWNTGSSQCISWALATDEQEEKLKSECFSKRTLDHDRCDQHTDCYSCTANTNDCHWCNDHCVPRNHSCSEGQISIFRYENCPKDNPMYYCNKKTSCRSCALDQNCQWEPRNQECIALPENICGIGWHLVGNSCLKITTAKENYDNAKLFCRNHNALLASLTTQKKVEFVLKQLRIMQSSQSMSKLTLTPWVGLRKINVSYWCWEDMSPFTNSLLQWMPSEPSDAGFCGILSEPSTRGLKAATCINPLNGSVCERPANHSAKQCRTPCALRTACGDCTSGSSECMWCSNMKQCVDSNAYVASFPFGQCMEWYTMSTCPPENCSGYCTCSHCLEQPGCGWCTDPSNTGKGKCIEGSYKGPVKMPSQAPTGNFYPQPLLNSSMCLEDSRYNWSFIHCPGNMSCTAWTGT*RRNSGIAWWLLHPMGAPLHC*GTPGGRRKLLV*GQCSIYTLLPACLWPACCGRVDPWCPWAGQLRRSCSVCRKMVLYWFMGFMVTSGDTSAWAMKCSRTGFWMPGSFTLSLVPEWPSSQGPTASPSVPMWVTSNSAGCQRCQVCKVHPPAGLCCARTEWHTFFWLWGLTFTSWTMQPAPQ*RPLAWPQE*AASYRWLSPSPTDTWHSSQTQATSGWGQHHSRRSYVSSTATSGHLQSRWSGAAVLVARRGPWWWPGKGG*WWWAMHPRASSLCWMRTPTWCLSSMGSASSPAAPTSSCMRFQRPARKSSKLPQWPPGRCSWRLRRSMRKRARRRTSTCGRSRSWAS*PRPCSSALRLQDMSTSQTCRRVCSGPPPSESVSWTDFHPTASCTCVRTCVCSMLFGTITSGSRSPIANISSSPSRCCWTGSCCGDFTPWPSRYASTCAFLKYRASAGSWPTGPATRCNRRMSQMRMWLEPLTRSWGTRLVSLTPTLLHEPMVVAARSWPSSCWSMSHAQGSRYPFS*R*RGANWH*ARPSRAGTLTWCSRCCCT*RTS*TEEIFS*PFGISPWPSVCTDSSVSIRS*RR*RTFTIRMTITRNWAASTSEPAMLQKSVLRGE*QLCRQPPMPSTRPRMSLQPRLQRIKCGSYGCSGA*KTSWGASS*TCLYMTQLPPSFLAVTTSVQSSWHVTSASLTRGSGG*S*LPWQIWKIGKS*RSFPRARNHPLATCLLWRSA*NNITNTKPRSMLPAWVPSRRSRLCFLLAMWLRLQMWPSNTGMRLS*ASYCPTAREPQMGPQLTRFNGPGHKPRRS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33483 GON4L::KHDC4 ENSG00000116580.20::ENSG00000132680.11 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 2404 FALSE NA FALSE NA GON4L ENSG00000116580.20 protein_coding - - chr1:155749659-155859400:- chr1:155853276:- chr1:155719450-155829191:- chr1:155823067:- KHDC4 ENSG00000132680.11 protein_coding - - chr1:155913045-155934413:- chr1:155927156:- chr1:155882836-155904204:- chr1:155896947:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none none 7 6 7 6 ONLY_REF_SPLICE YES_LDAS 0.1643 GT 1.5628 AG 1.9656 ENST00000368331.6 1-505 ENST00000368321.8 465-1845 chr1|-|[0]155853276-155853780[0]<==>chr1|-|[2]155914121-155914320[1]|[0]155915873-155915964[2]|[1]155916625-155916737[0]|[2]155917499-155917672[0]|[2]155921375-155921628[1]|[0]155921861-155921918[0]|[2]155923627-155923687[2]|[1]155925632-155925843[0]|[2]155926676-155926839[1]|[0]155927104-155927156[2] atgttgccctgtaagaagagaagaactacagtgacagagtccctacagcataaaggcaatcaagaggaaaacaacgtagacctagaatcagccgttaaaccagaatctgaccaggttaaggacttgagttcggtgtcactatcctgggatccaagtcatggcagagtagctggcttcgaagtacagtctttgcaggatgcaggaaatcagcttggtatggaggatacatctctgagctctggaatgctcacccagaacacaaatgtaccaattctagaaggtgttgatgtggccatctctcagggaatcaccctaccttccttggagtcttttcacccccttaatatacacattggtaaaggaaaactccacgctactggctcaaagagagggaaaaaaatgacactcaggcctgggccagttacccaagaagacagatgtgatcatcttaccctaaaggagcctttttcaggagagcctagtgaagaagtcaaggaagaaggagGGATCGTCCATTATATCTTCATGTTCAGGGCCAGACACGGGAATTAGTGGACAGAGCTGTAAACCGGATCAAAGAAATTATCACCAATGGAGTGGTAAAAGCTGCCACAGGAACAAGTCCAACTTTTAATGGTGCAACAGTAACTGTCTATCACCAGCCAGCACCCATCGCTCAGTTGTCTCCAGCTGTTAGCCAGAAGCCTCCCTTCCAGTCAGGGATGCATTATGTTCAAGATAAATTATTTGTGGGTCTAGAACATGCTGTACCCACTTTTAATGTCAAGGAGAAGGTGGAAGGTCCAGGCTGCTCCTATTTGCAGCACATTCAGATTGAAACAGGTGCCAAAGTCTTCCTGCGGGGCAAAGGTTCAGGCTGCATTGAGCCAGCATCTGGCCGAGAAGCTTTTGAACCTATGTATATTTACATCAGTCACCCCAAACCAGAAGGCCTGGCTGCTGCCAAGAAGCTTTGTGAGAATCTTTTGCAAACAGTTCATGCTGAATACTCTAGATTTGTGAATCAGATTAATACTGCTGTACCTTTACCAGGCTATACACAACCCTCTGCTATAAGTAGTGTCCCTCCTCAACCACCATATTATCCATCCAATGGCTATCAGTCTGGTTACCCTGTTGTTCCCCCTCCTCAGCAGCCAGTTCAACCTCCCTACGGAGTACCAAGCATAGTGCCACCAGCTGTTTCATTAGCACCTGGAGTCTTGCCGGCATTACCTACTGGAGTCCCACCTGTGCCAACACAATACCCGATAACACAAGTGCAGCCTCCAGCTAGCACTGGACAGAGTCCGATGGGTGGTCCTTTTATTCCTGCTGCTCCTGTCAAAACTGCCTTGCCTGCTGGCCCCCAGCCCCAGCCCCAGCCCCAGCCCCCACTCCCAAGTCAGCCCCAGGCACAGAAGAGACGATTCACAGAGGAGCTACCAGATGAACGGGAATCTGGACTGCTTGGATACCAGCATGGACCCATTCATATGACTAATTTAGGTACAGGCTTCTCCAGTCAGAATGAGATTGAAGGTGCAGGATCGAAGCCAGCAAGTTCCTCAGGCAAAGAGAGAGAGAGGGACAGGCAGTTGATGCCTCCACCAGCCTTTCCAGTGACTGGAATAAAAACAGAGTCCGATGAAAGGAATGGGTCTGGGACCTTAACAGGGAGCCATGATTATCCAGCCAAGAAGATGAAAACTACAGAGAAGGGATTTGGCTTGGTGGCTTATGCTGCAGATTCATCTGATGAAGAGGAGGAACATGGAGGTCATAAAAATGCAAGTAGTTTTCCACAGGGCTGGAGTTTGGGATACCAATATCCTTCATCACAACCACGAGCTAAACAACAGATGCCATTCTGGATGGCTCCCTAG MLPCKKRRTTVTESLQHKGNQEENNVDLESAVKPESDQVKDLSSVSLSWDPSHGRVAGFEVQSLQDAGNQLGMEDTSLSSGMLTQNTNVPILEGVDVAISQGITLPSLESFHPLNIHIGKGKLHATGSKRGKKMTLRPGPVTQEDRCDHLTLKEPFSGEPSEEVKEEGGIVHYIFMFRARHGN*WTEL*TGSKKLSPMEW*KLPQEQVQLLMVQQ*LSITSQHPSLSCLQLLARSLPSSQGCIMFKINYLWV*NMLYPLLMSRRRWKVQAAPICSTFRLKQVPKSSCGAKVQAALSQHLAEKLLNLCIFTSVTPNQKAWLLPRSFVRIFCKQFMLNTLDL*IRLILLYLYQAIHNPLL*VVSLLNHHIIHPMAISLVTLLFPLLSSQFNLPTEYQA*CHQLFH*HLESCRHYLLESHLCQHNTR*HKCSLQLALDRVRWVVLLFLLLLSKLPCLLAPSPSPSPSPHSQVSPRHRRDDSQRSYQMNGNLDCLDTSMDPFI*LI*VQASPVRMRLKVQDRSQQVPQAKRERGTGS*CLHQPFQ*LE*KQSPMKGMGLGP*QGAMIIQPRR*KLQRRDLAWWLMLQIHLMKRRNMEVIKMQVVFHRAGVWDTNILHHNHELNNRCHSGWLP FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33484 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2397 TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39210786:- chr21:40556102-40693485:- chr21:40582712:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NBCH_WD40|157-215|0.00068^WD40|182-214|1.1e-10^ANAPC4_WD40|187-235|0.00068^NBCH_WD40|206-257|6.6e-06^WD40|218-255|7.2e-10^WD40|262-301|1.1e-08^WD40|329-351|0.00043^WD40|360-395|1.7e-10^NBCH_WD40|362-398|0.0021^ANAPC4_WD40|363-399|0.025^ANAPC4_WD40|425-474|5.3e-06^WD40|429-454|0.00015^NBCH_WD40|435-506|0.0027^WD40|458-497|1.9e-07^ANAPC4_WD40|480-506|0.54^ANAPC4_WD40|509-544|0.37^WD40|514-537|0.0001^HemeBinding_Shp|934-970|0.0011^Bromodomain|1166-1252|2.9e-22^HemeBinding_Shp|1260-1315|0.41^Bromodomain|1322-1403|7.9e-22^HemeBinding_Shp|1925-1991|0.14 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:2.19Mb] 7 15 7 8.78 ONLY_REF_SPLICE YES_LDAS 0.1995 GT 1.8892 AG 1.9656 ENST00000380800.7 1-4044 ENST00000675307.1 1180-2181 chr21|-|[2]39210786-39210929[0]|[2]39212666-39212707[0]|[2]39213481-39213553[2]|[1]39215237-39215362[2]|[1]39218152-39218272[1]|[0]39218505-39218660[1]|[0]39224408-39224469[2]|[1]39225086-39225197[1]|[0]39228500-39228582[2]|[1]39229312-39229436[0]|[2]39232177-39232284[0]|[2]39232373-39232498[0]|[2]39236595-39236784[2]|[1]39238479-39238573[0]|[2]39247701-39247832[0]|[2]39250796-39250889[2]|[1]39255645-39255828[1]|[0]39258487-39258672[1]|[0]39264460-39264685[0]|[2]39264891-39265019[0]|[2]39269899-39270033[0]|[2]39270283-39270433[2]|[1]39274374-39274472[2]|[1]39276173-39276213[0]|[2]39277251-39277351[1]|[0]39278743-39278813[2]|[1]39280148-39280248[0]|[2]39293811-39294032[0]|[2]39295743-39295903[1]|[0]39296265-39296363[1]|[0]39298432-39298582[0]|[2]39312841-39312900[0]|[2]39313072-39313101[0]|[2]39313241-39313299[1]|[0]39313443-39313491[0]<==>chr21|-|[2]36754246-36754417[2]|[1]36756542-36756755[1]|[0]36759727-36759841[0]|[2]36765012-36765172[1]|[0]36767218-36767285[2]|[1]36896860-36897131[0] atggcggagccgtcgtccgcccgacgcccggtgcctctcatcgagtcggagctgtacttccttatcgcccggtacctatcggcgggcccgtgtcggagagcggcccaggtgctggtgcaggagctggagcagtaccagttgttgccgaagagattggactgggagggcaacgagcacaacaggagctacgaggagttggtcttgtccaataagcatgtggctcctgatcatcttttgcaaatctgccagcgcatcggtcctatgttggataaagaaattccacccagtatttcaagagtcacttctttacttggtgcaggaaggcagtctttgctacgtacagcaaaagactgcaggcacacagtttggaagggctctgcctttgctgctcttcatagaggaagacctcctgaaatgccagtgaattatggttccccaccaaatcttgtggagatacatcgaggaaaacaactcacagggtgttccacttttagtacagcatttccaggaactatgtatcagcatataaaaatgcacagaaggattctcggacatctatctgctgtttactgtgtagcatttgataggacaggacatagaatctttacaggttcagatgactgtttggtaaagatttggtcaacacataatggccgcttgttatctacattaagaggtcattctgcagaaatttcagatatggcagtaaactatgagaatacaatgattgctgcggggagctgtgataaaattattagagtgtggtgcttgagaacttgtgccccagttgctgtgctccaaggacacacaggatcaattacatctttacagtttagcccgatggccaaaggctctcaaagatacatggtttccactggtgctgatgggacagtttgcttttggcaatgggatttagaatccttaaaatttagcccacgtcccctgaagttcactgaaaagcctaggccaggcgttcaaatgctttgttcttcttttagtgttggtggtatgtttttagccacaggtagtactgatcatgtaatcagaatgtattttttgggttttgaagcacccgaaaaaatcgcagaacttgaaagccacactgataaagtagatagtatccaattttgtaacaatggtgatcggttcctaagtggtagcagagatggaacagcacggatttggagatttgagcagttagaatggaggagcattttattggatatggctaccagaatctcaggggacttatcttccgaagaggaaaggtttatgaaacctaaagtaacaatgatagcttggaatcaaaatgatagcattgttgtcacagctgtgaatgatcatgtcctcaaagtgtggaattcttacactggacaactgcttcataacttaatgggacatgctgatgaagtatttgttctggagacacatccctttgattccagaattatgttatctgcaggacatgatggcagcatatttatatgggatattacaaaaggtaccaagatgaaacattattttaatatgattgaaggacaaggacatggagctgtgtttgactgtaagttttcacaggatggacagcattttgcctgtacagattctcatgggcaccttctgatatttggttttggatgcagcaaaccatatgaaaagattcctgatcagatgttcttccatactgactatcgaccacttattagagattctaataattatgtcttagatgagcaaactcagcaggctcctcatcttatgcctccaccattcttggtagatgtagatggaaatcctcatccaaccaagtatcagagattagtaccaggccgagaaaattctgcagatgaacatttgattccacagctgggctatgtggcaacaagtgatggagaggtgattgaacaaattataagcctgcaaaccaatgataatgatgaacgcagcccagaatcgagtattcttgatggaatgataagacagttgcagcagcagcaagatcagagaatgggagcagatcaggatactattccaagaggactttcaaatggtgaagaaacaccccggagaggttttagaaggctgagcttagacattcagtcccctccaaatattggtctgcgtcgtagtggacaagttgaaggtgttcgtcagatgcatcaaaacgctccacgcagtcagattgctacagaacgtgacctgcaggcttggaaacgaagagtggttgtaccagaggtaccactaggcatatttaggaagctggaagacttccgattagagaaaggtgaagaggaaagaaatctttatataataggaagaaaaagaaagactcttcagctctcacataagtcggattcagtggttttggtatcacagtctagacaaaggacatgtaggcgtaaatatccaaattatggtagaagaaatcgtagctggcgtgagttatcttctggaaatgagtcttcaagctctgtaagacatgagacttcctgtgatcagagtgaaggttctggttcttcagaagaggatgaatggagaagtgacagaaaaagtgagagttacagcgaaagttcaagtgactcttcatctagatattccgattggacagctgatgcgggcatcaatttgcagcctcctttaagaacatcatgtcgtcgacgaattactcgattttgtagtagttcagaagatgaaatatctactgagaatttatctcctccaaaaagaagacgaaagagaaagaaagaaaataagcctaagaaggagaatttgcggaggatgactccagcagagcttgcaaatatggagcatttatatgaatttcaccctccagtttggattactgacaccacacttagaaaatctccttttgttcctcaaatgggtgatgaggtaatatattttcgacagggtcatgaagcttatattgaggctgtaagaagaaataatatttatgaactgaaccctaataaggagccatggagaaaaatggatcttagggatcaagaattggttaaaatagttggaatacgatatgaagttgggccccctacactctgttgcctaaaactagcatttatagatccagcaactggaaaacttatggacaaatctttctctattagatatcatgatatgccagatgttattgactttcttgtattgcgtcaattttatgatgaagcaagacagaggaattggcagtcttgtgacagattccgctctattattgatgatgcttggtggtttggaacagtgttaagtcaagagccatatcaaccacagtatcctgatagtcatttccagtgttatattgttaggtgggataatactgaaattgaaaaacttagcccatgggacatggaaccaattcctgataatgttgatccacctgaagaattaggagctagtatttctgtcacaacagatgagctagagaaattgctctataaaccacaagctggtgaatggggtcagaaatcaagagatgaagaatgtgatagaattatcagtggtatagatcaacttttgaatcttgatatagcagcagcttttgcaggccctgttgatttgtgtacatacccgaagtactgtactgtagtagcttatccaaccgatctttacacaattcgaatgagacttgttaatcgattttacaggaggctgtctgcgttagtttgggaagtcagatatatagaacataatgccagaacatttaacgaacctgagagtgtaattgcaagatcagctaaaaagataactgaccaacttttaaaatttatcaagaatcaacactgtacaaatatctcagaactttctaacacatctgaaaatgatgagcaaaatgctgaggatttggatgatagtgatcttcctaaaacatcttctggaaggaggagagtccatgatgggaaaaaaagcatcagagctacgaactatgttgaaagcaactggaagaaacagtgtaaggaactagtgaacttaatttttcagtgtgaagattctgaaccatttagacaacctgttgatttggttgaatatccaGAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTTAGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTTTGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGCTTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATGTGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATCTGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGGCCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAACATTTTATATACTTATTGGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCATCACAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTGACTGTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATACTGGGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACGATTCTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATGCTGAGAAACCTCATCCTCCCCAAACGGCGGTAA MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKYQRLVPGRENSADEHLIPQLGYVATSDGEVIEQIISLQTNDNDERSPESSILDGMIRQLQQQQDQRMGADQDTIPRGLSNGEETPRRGFRRLSLDIQSPPNIGLRRSGQVEGVRQMHQNAPRSQIATERDLQAWKRRVVVPEVPLGIFRKLEDFRLEKGEEERNLYIIGRKRKTLQLSHKSDSVVLVSQSRQRTCRRKYPNYGRRNRSWRELSSGNESSSSVRHETSCDQSEGSGSSEEDEWRSDRKSESYSESSSDSSSRYSDWTADAGINLQPPLRTSCRRRITRFCSSSEDEISTENLSPPKRRRKRKKENKPKKENLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVPQMGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPWRKMDLRDQELVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTEIEKLSPWDMEPIPDNVDPPEELGASISVTTDELEKLLYKPQAGEWGQKSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALVWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQHCTNISELSNTSENDEQNAEDLDDSDLPKTSSGRRRVHDGKKSIRATNYVESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPEIRDPLMQWLGKHVDSEGEIKSGQLSLRFVSSYVSEVEITPSCIPVVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTPQEMGLIVIAARQTEGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELKPLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPKVSIVGLDDSGFLQVHQEGGEVVTVHPDGNSFDMLRNLILPKRR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33487 BRWD1::HLCS ENSG00000185658.14::ENSG00000159267.17 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2398 TRUE 4393 TRUE 1662 BRWD1 ENSG00000185658.14 protein_coding - - chr21:39184176-39321559:- chr21:39212666:- chr21:40556102-40693485:- chr21:40584592:- HLCS ENSG00000159267.17 protein_coding - - chr21:36748626-36990236:- chr21:36897131:- chr21:38120927-38362536:- chr21:38269431:- chr21:39210726,chr21:39210737 chr21:36928395,chr21:36928403 NA NA chr21:40582652,chr21:40582663 chr21:38300695,chr21:38300703 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NBCH_WD40|157-215|0.00068^WD40|182-214|1.1e-10^ANAPC4_WD40|187-235|0.00068^NBCH_WD40|206-257|6.6e-06^WD40|218-255|7.2e-10^WD40|262-301|1.1e-08^WD40|329-351|0.00043^WD40|360-395|1.7e-10^NBCH_WD40|362-398|0.0021^ANAPC4_WD40|363-399|0.025^ANAPC4_WD40|425-474|5.3e-06^WD40|429-454|0.00015^NBCH_WD40|435-506|0.0027^WD40|458-497|1.9e-07^ANAPC4_WD40|480-506|0.54^ANAPC4_WD40|509-544|0.37^WD40|514-537|0.0001^HemeBinding_Shp|934-970|0.0011^Bromodomain|1166-1252|2.9e-22^HemeBinding_Shp|1260-1315|0.41^Bromodomain|1322-1403|7.9e-22^HemeBinding_Shp|1925-1991|0.14 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:2.19Mb] 6 11 6 3.3 ONLY_REF_SPLICE YES_LDAS 0.1175 GT 1.6895 AG 1.9656 ENST00000380800.7 1-3900 ENST00000675307.1 1180-2181 chr21|-|[2]39212666-39212707[0]|[2]39213481-39213553[2]|[1]39215237-39215362[2]|[1]39218152-39218272[1]|[0]39218505-39218660[1]|[0]39224408-39224469[2]|[1]39225086-39225197[1]|[0]39228500-39228582[2]|[1]39229312-39229436[0]|[2]39232177-39232284[0]|[2]39232373-39232498[0]|[2]39236595-39236784[2]|[1]39238479-39238573[0]|[2]39247701-39247832[0]|[2]39250796-39250889[2]|[1]39255645-39255828[1]|[0]39258487-39258672[1]|[0]39264460-39264685[0]|[2]39264891-39265019[0]|[2]39269899-39270033[0]|[2]39270283-39270433[2]|[1]39274374-39274472[2]|[1]39276173-39276213[0]|[2]39277251-39277351[1]|[0]39278743-39278813[2]|[1]39280148-39280248[0]|[2]39293811-39294032[0]|[2]39295743-39295903[1]|[0]39296265-39296363[1]|[0]39298432-39298582[0]|[2]39312841-39312900[0]|[2]39313072-39313101[0]|[2]39313241-39313299[1]|[0]39313443-39313491[0]<==>chr21|-|[2]36754246-36754417[2]|[1]36756542-36756755[1]|[0]36759727-36759841[0]|[2]36765012-36765172[1]|[0]36767218-36767285[2]|[1]36896860-36897131[0] atggcggagccgtcgtccgcccgacgcccggtgcctctcatcgagtcggagctgtacttccttatcgcccggtacctatcggcgggcccgtgtcggagagcggcccaggtgctggtgcaggagctggagcagtaccagttgttgccgaagagattggactgggagggcaacgagcacaacaggagctacgaggagttggtcttgtccaataagcatgtggctcctgatcatcttttgcaaatctgccagcgcatcggtcctatgttggataaagaaattccacccagtatttcaagagtcacttctttacttggtgcaggaaggcagtctttgctacgtacagcaaaagactgcaggcacacagtttggaagggctctgcctttgctgctcttcatagaggaagacctcctgaaatgccagtgaattatggttccccaccaaatcttgtggagatacatcgaggaaaacaactcacagggtgttccacttttagtacagcatttccaggaactatgtatcagcatataaaaatgcacagaaggattctcggacatctatctgctgtttactgtgtagcatttgataggacaggacatagaatctttacaggttcagatgactgtttggtaaagatttggtcaacacataatggccgcttgttatctacattaagaggtcattctgcagaaatttcagatatggcagtaaactatgagaatacaatgattgctgcggggagctgtgataaaattattagagtgtggtgcttgagaacttgtgccccagttgctgtgctccaaggacacacaggatcaattacatctttacagtttagcccgatggccaaaggctctcaaagatacatggtttccactggtgctgatgggacagtttgcttttggcaatgggatttagaatccttaaaatttagcccacgtcccctgaagttcactgaaaagcctaggccaggcgttcaaatgctttgttcttcttttagtgttggtggtatgtttttagccacaggtagtactgatcatgtaatcagaatgtattttttgggttttgaagcacccgaaaaaatcgcagaacttgaaagccacactgataaagtagatagtatccaattttgtaacaatggtgatcggttcctaagtggtagcagagatggaacagcacggatttggagatttgagcagttagaatggaggagcattttattggatatggctaccagaatctcaggggacttatcttccgaagaggaaaggtttatgaaacctaaagtaacaatgatagcttggaatcaaaatgatagcattgttgtcacagctgtgaatgatcatgtcctcaaagtgtggaattcttacactggacaactgcttcataacttaatgggacatgctgatgaagtatttgttctggagacacatccctttgattccagaattatgttatctgcaggacatgatggcagcatatttatatgggatattacaaaaggtaccaagatgaaacattattttaatatgattgaaggacaaggacatggagctgtgtttgactgtaagttttcacaggatggacagcattttgcctgtacagattctcatgggcaccttctgatatttggttttggatgcagcaaaccatatgaaaagattcctgatcagatgttcttccatactgactatcgaccacttattagagattctaataattatgtcttagatgagcaaactcagcaggctcctcatcttatgcctccaccattcttggtagatgtagatggaaatcctcatccaaccaagtatcagagattagtaccaggccgagaaaattctgcagatgaacatttgattccacagctgggctatgtggcaacaagtgatggagaggtgattgaacaaattataagcctgcaaaccaatgataatgatgaacgcagcccagaatcgagtattcttgatggaatgataagacagttgcagcagcagcaagatcagagaatgggagcagatcaggatactattccaagaggactttcaaatggtgaagaaacaccccggagaggttttagaaggctgagcttagacattcagtcccctccaaatattggtctgcgtcgtagtggacaagttgaaggtgttcgtcagatgcatcaaaacgctccacgcagtcagattgctacagaacgtgacctgcaggcttggaaacgaagagtggttgtaccagaggtaccactaggcatatttaggaagctggaagacttccgattagagaaaggtgaagaggaaagaaatctttatataataggaagaaaaagaaagactcttcagctctcacataagtcggattcagtggttttggtatcacagtctagacaaaggacatgtaggcgtaaatatccaaattatggtagaagaaatcgtagctggcgtgagttatcttctggaaatgagtcttcaagctctgtaagacatgagacttcctgtgatcagagtgaaggttctggttcttcagaagaggatgaatggagaagtgacagaaaaagtgagagttacagcgaaagttcaagtgactcttcatctagatattccgattggacagctgatgcgggcatcaatttgcagcctcctttaagaacatcatgtcgtcgacgaattactcgattttgtagtagttcagaagatgaaatatctactgagaatttatctcctccaaaaagaagacgaaagagaaagaaagaaaataagcctaagaaggagaatttgcggaggatgactccagcagagcttgcaaatatggagcatttatatgaatttcaccctccagtttggattactgacaccacacttagaaaatctccttttgttcctcaaatgggtgatgaggtaatatattttcgacagggtcatgaagcttatattgaggctgtaagaagaaataatatttatgaactgaaccctaataaggagccatggagaaaaatggatcttagggatcaagaattggttaaaatagttggaatacgatatgaagttgggccccctacactctgttgcctaaaactagcatttatagatccagcaactggaaaacttatggacaaatctttctctattagatatcatgatatgccagatgttattgactttcttgtattgcgtcaattttatgatgaagcaagacagaggaattggcagtcttgtgacagattccgctctattattgatgatgcttggtggtttggaacagtgttaagtcaagagccatatcaaccacagtatcctgatagtcatttccagtgttatattgttaggtgggataatactgaaattgaaaaacttagcccatgggacatggaaccaattcctgataatgttgatccacctgaagaattaggagctagtatttctgtcacaacagatgagctagagaaattgctctataaaccacaagctggtgaatggggtcagaaatcaagagatgaagaatgtgatagaattatcagtggtatagatcaacttttgaatcttgatatagcagcagcttttgcaggccctgttgatttgtgtacatacccgaagtactgtactgtagtagcttatccaaccgatctttacacaattcgaatgagacttgttaatcgattttacaggaggctgtctgcgttagtttgggaagtcagatatatagaacataatgccagaacatttaacgaacctgagagtgtaattgcaagatcagctaaaaagataactgaccaacttttaaaatttatcaagaatcaacactgtacaaatatctcagaactttctaacacatctgaaaatgatgagcaaaatgctgaggatttggatgatagtgatcttcctaaaacatcttctggaaggaggagaGAAATCAGGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTTAGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGCCTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTTTGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGCTTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATGTGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATCTGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGGCCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAACATTTTATATACTTATTGGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCATCACAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTGACTGTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATACTGGGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACGATTCTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATGCTGAGAAACCTCATCCTCCCCAAACGGCGGTAA MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQLLPKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQRIGPMLDKEIPPSISRVTSLLGAGRQSLLRTAKDCRHTVWKGSAFAALHRGRPPEMPVNYGSPPNLVEIHRGKQLTGCSTFSTAFPGTMYQHIKMHRRILGHLSAVYCVAFDRTGHRIFTGSDDCLVKIWSTHNGRLLSTLRGHSAEISDMAVNYENTMIAAGSCDKIIRVWCLRTCAPVAVLQGHTGSITSLQFSPMAKGSQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFEAPEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMATRISGDLSSEEERFMKPKVTMIAWNQNDSIVVTAVNDHVLKVWNSYTGQLLHNLMGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGTKMKHYFNMIEGQGHGAVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKYQRLVPGRENSADEHLIPQLGYVATSDGEVIEQIISLQTNDNDERSPESSILDGMIRQLQQQQDQRMGADQDTIPRGLSNGEETPRRGFRRLSLDIQSPPNIGLRRSGQVEGVRQMHQNAPRSQIATERDLQAWKRRVVVPEVPLGIFRKLEDFRLEKGEEERNLYIIGRKRKTLQLSHKSDSVVLVSQSRQRTCRRKYPNYGRRNRSWRELSSGNESSSSVRHETSCDQSEGSGSSEEDEWRSDRKSESYSESSSDSSSRYSDWTADAGINLQPPLRTSCRRRITRFCSSSEDEISTENLSPPKRRRKRKKENKPKKENLRRMTPAELANMEHLYEFHPPVWITDTTLRKSPFVPQMGDEVIYFRQGHEAYIEAVRRNNIYELNPNKEPWRKMDLRDQELVKIVGIRYEVGPPTLCCLKLAFIDPATGKLMDKSFSIRYHDMPDVIDFLVLRQFYDEARQRNWQSCDRFRSIIDDAWWFGTVLSQEPYQPQYPDSHFQCYIVRWDNTEIEKLSPWDMEPIPDNVDPPEELGASISVTTDELEKLLYKPQAGEWGQKSRDEECDRIISGIDQLLNLDIAAAFAGPVDLCTYPKYCTVVAYPTDLYTIRMRLVNRFYRRLSALVWEVRYIEHNARTFNEPESVIARSAKKITDQLLKFIKNQHCTNISELSNTSENDEQNAEDLDDSDLPKTSSGRRREIRDPLMQWLGKHVDSEGEIKSGQLSLRFVSSYVSEVEITPSCIPVVTNMEAFSSEHFNLEIYRQNLQTKQLGKVILFAEVTPTTMRLLDGLMFQTPQEMGLIVIAARQTEGKGRGGNVWLSPVGCALSTLLISIPLRSQLGQRIPFVQHLMSVAVVEAVRSIPEYQDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLITEYNKQHKAELKPLRADYLIARVVTVLEKLIKEFQDKGPNSVLPLYYRYWVHSGQQVHLGSAEGPKVSIVGLDDSGFLQVHQEGGEVVTVHPDGNSFDMLRNLILPKRR* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33488 PDCD1LG2::TPGS2 ENSG00000197646.8::ENSG00000134779.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2410 FALSE NA FALSE NA PDCD1LG2 ENSG00000197646.8 protein_coding + + chr9:5510531-5571282:+ chr9:5535050:+ chr9:5510531-5571282:+ chr9:5535050:+ TPGS2 ENSG00000134779.15 protein_coding - - chr18:36777647-36829216:- chr18:36800311:- chr18:34357610-34409179:- chr18:34380274:- chr9:5543862,chr9:5543859 chr18:36801056,chr18:36801059 NA NA chr9:5543862,chr9:5543859 chr18:34381019,chr18:34381022 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Ig_3|23-103|5e-10^Ig_2|30-116|8.3e-08^C2-set_2|33-44|2^ig|34-103|2.2e-05^V-set|63-105|2.5e-05^I-set|72-104|4.6e-06^I-set|131-161|4.6e-06^V-set|131-155|0.15^ig|132-157|0.00015^Ig_3|133-196|6.6e-09^Ig_2|133-201|5.8e-08^C2-set_2|136-198|1.1e-08 none ["PDCD1LG2:Oncogene","PDCD1LG2:FoundationOne_panel","PDCD1LG2:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr9--chr18] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1264 GT 1.9219 AG 1.9899 ENST00000397747.5 1-361 ENST00000590842.5 383-915 chr9|+|[0]5522547-5522601[0]|[1]5534745-5535050[0]<==>chr18|-|[2]36786822-36787079[0]|[2]36798449-36798609[1]|[0]36800198-36800311[1] atgatcttcctcctgctaatgttgagcctggaattgcagcttcaccagatagcagctttattcacagtgacagtccctaaggaactgtacataatagagcatggcagcaatgtgaccctggaatgcaactttgacactggaagtcatgtgaaccttggagcaataacagccagtttgcaaaaggtggaaaatgatacatccccacaccgtgaaagagccactttgctggaggagcagctgcccctagggaaggcctcgttccacatacctcaagtccaagtgagggacgaaggacagtaccaatgcataatcatctatggggtcgcctgggactacaagtacctgactctgaaagtcaaagCCAGTGATGATCAGCCAGAGAAGCCTCACTTTGACTCTCGCAGTGTGATATTTGAGCTGGATTCATGCAATGGCAGTGGGAAAGTTTGCCTTGTCTACAAAAGTGGGAAACCAGCATTAGCAGAAGACACTGAGATCTGGTTCCTGGACAGAGCGTTATACTGGCATTTTCTCACAGACACCTTTACTGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAATATGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAGATAACTTATAATATCAAAATGAATAGAAGAAAATGTGTTCACTGGAAACTGGCTGTTGAGCCCCTCCAATGGGAGCTGAGGAGCTGTGTCTCTGCAGGCATGGGGACTGGCCACAAGCAAAGAGTCAGCAGCATGAAGCCCCGGAGCTGTAGCGTGTGCAGCAGGCGCCAATCCAACAGCATGGGAACAACAGTGTCGCAATCATTCCTCAGTTATGGCAAGAATGTGCTATTTTTCACTGTTAGGTGTTGCTTCTGA MIFLLLMLSLELQLHQIAALFTVTVPKELYIIEHGSNVTLECNFDTGSHVNLGAITASLQKVENDTSPHRERATLLEEQLPLGKASFHIPQVQVRDEGQYQCIIIYGVAWDYKYLTLKVKASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKITYNIKMNRRKCVHWKLAVEPLQWELRSCVSAGMGTGHKQRVSSMKPRSCSVCSRRQSNSMGTTVSQSFLSYGKNVLFFTVRCCF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE programmed cell death 1 ligand 2 1 Yes PMBL, Hodgkin lymphoma leukaemia_lymphoma oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33490 PUS7::ATXN7L1 ENSG00000091127.14::ENSG00000146776.15 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2406 FALSE NA FALSE NA PUS7 ENSG00000091127.14 protein_coding - - chr7:105439661-105522271:- chr7:105522052:- chr7:105080108-105162718:- chr7:105162499:- ATXN7L1 ENSG00000146776.15 protein_coding - - chr7:105604772-105876599:- chr7:105665288:- chr7:105245219-105517045:- chr7:105305735:- chr7:105517835,chr7:105517838 chr7:105722753,chr7:105722753 NA NA chr7:105158282,chr7:105158285 chr7:105363199,chr7:105363199 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.08Mb];LOCAL_REARRANGEMENT:-:[82800] 5 9 5 9 ONLY_REF_SPLICE YES_LDAS 0.177 GT 1.6895 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33491 CTC-338M12.4::LINC00964 ENSG00000233937.9::ENSG00000249816.8 HCC1954 SRR8616174 SRR8639161 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2408 FALSE NA FALSE NA CTC-338M12.4 ENSG00000233937.9 lncRNA + + chr5:181246466-181272167:+ chr5:181247386:+ chr5:180673466-180699168:+ chr5:180674386:+ LINC00964 ENSG00000249816.8 lncRNA + + chr8:124823702-124962531:+ chr8:124849275:+ chr8:125835944-125974773:+ chr8:125861517:+ chr5:181254910,chr5:181254908 chr8:124834523,chr8:124834518 NA NA chr5:180681910,chr5:180681908 chr8:125846765,chr8:125846760 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023"];INTERCHROMOSOMAL[chr5--chr8] 4 7 4 4.56 ONLY_REF_SPLICE YES_LDAS 0.1082 GT 1.8256 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33495 GOSR1::MBTD1 ENSG00000108587.16::ENSG00000011258.16 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2414 FALSE NA FALSE NA GOSR1 ENSG00000108587.16 protein_coding + + chr17:30477362-30527592:+ chr17:30492753:+ chr17:28804380-28854610:+ chr17:28819771:+ MBTD1 ENSG00000011258.16 protein_coding - - chr17:51177425-51260163:- chr17:51180694:- chr17:49254786-49337524:- chr17:49258055:- chr17:30503125,chr17:30503124 chr17:51184913,chr17:51184914 NA NA chr17:28830143,chr17:28830142 chr17:49262274,chr17:49262275 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame YceG_bac|75-231|8.6e-06^Sec20|78-115|0.16^DUF1664|98-98|0.16^V-SNARE_C|107-135|0.18^V-SNARE_C|165-230|2.9e-26^DUF1664|172-227|0.00021^Sec20|173-237|3e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:20.65Mb] 1026 430 1026 430 ONLY_REF_SPLICE YES_LDAS 18.0378 GT 1.9086 AG 1.9086 ENST00000414833.2 1-529 ENST00000586178.6 1769-1887 chr17|+|[1]30477442-30477486[0]|[1]30481143-30481263[1]|[2]30484214-30484301[2]|[0]30484663-30484770[2]|[0]30490126-30490217[1]|[2]30492679-30492753[1]<==>chr17|-|[2]51180576-51180694[1] agggaccagcagttactgggaaggtgagggcgagaaggcctccggatctcaggaaacaggctcgacagctggaaaatgaacttgacctgaaactagtttccttcagcaaactatgtacaagttacagtcatagcagtacccgagatggaagacgcgacaggtatagttctgatacaacaccccttttaaatggatcaagccaagacagaatgtttgagacaatggcgattgagattgaacaacttttggcaaggcttacaggggtaaatgataaaatggcagaatataccaacagtgcaggtgtcccctccttgaatgcagccctgatgcatacattacagcggcatagagacatattgcaggattatacacatgaattccataaaaccaaagcaaactttatggcaatacgggaaagggagaatcttatgggatcagtacgaaaagatattgagtcatataaaagtgggtctggagtaaacaacagaagaactgagctatttttgaaagaacatgaccaccttcgaaaTGACAACACTGCAGCTGAAGGAGGAGTTGCTGGATGGAGAGGATTATAATTTCCTTCAAGGAGCGTCTGATCAGGAAAGCAATGGCTCTGCCAACTTCTACATCAAACAAGAGCCATGA GPAVTGKVRARRPPDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNDNTAAEGGVAGWRGL*FPSRSV*SGKQWLCQLLHQTRAM FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33496 TMEM104::NHERF1 ENSG00000109066.14::ENSG00000109062.12 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2418 FALSE NA FALSE NA TMEM104 ENSG00000109066.14 protein_coding + + chr17:74776499-74839753:+ chr17:74795632:+ chr17:72772638-72835892:+ chr17:72791771:+ NHERF1 ENSG00000109062.12 protein_coding + + chr17:74748628-74769353:+ chr17:74766936:+ chr17:72744767-72765492:+ chr17:72763075:+ chr17:74809250,chr17:74809245 chr17:74765283,chr17:74765275 NA NA chr17:72805389,chr17:72805384 chr17:72761422,chr17:72761414 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["TMEM104:Oncogene"] 163 58 163 58 ONLY_REF_SPLICE YES_LDAS 2.7378 GT 1.9086 AG 1.5301 ENST00000417024.6 1-675 ENST00000262613.10 758-1077 chr17|+|[0]74777331-74777375[2]|[0]74777578-74777738[1]|[2]74788789-74788870[2]|[0]74790200-74790296[0]|[1]74790956-74791036[0]|[1]74795012-74795111[1]|[2]74795524-74795632[2]<==>chr17|+|[1]74766936-74766976[2]|[0]74768147-74768236[2]|[0]74768468-74768656[2] atggcgggtgaaattacagagaccggggaactctactcttcctacgtgtttgtcagagtggtcaagccaaacaaaatcgccatgctgtttataatgttaatcccgggctgggcacggtggctcacgcctgtaatcccagcactttgggaggctgaagcgggcagatcacctgaggtcaggagttcaagaccagcctggccaacatgcttcgtgaccaccacctttgtgatagaggccatggctgcagccaacgcgcagctccactggaagaggatggagaacctcaaggaggaggaagatgacgactcctccacagcctcagacagcgatgttctcatccgggacaactacgagcgggcagagaagcggcccatcctgtctgtgcagagacgtggatctcccaacccgtttgaaatcacagaccgggtggaaatgggacaaatggcctccatgttcttcaataaagtgggggtcaacttgttctatttctgcatcatcgtttacctgtatggagacctcgccatctatgctgctgccgtgcccttctccctcatgcaggtgacctgcagcgccactggcaatgactcctgcggtgtggaagcagacaccaaatacaatgacactgaccggtgctgggggcccctgcgccgagtggacgcctaccgcatctacttgGTCCCCTGCCTGTGCCCTTCACCAATGGGGAGATACAGAAGGAGAACAGTCGTGAAGCCCTGGCAGAGGCAGCCTTGGAGAGCCCCAGGCCAGCCCTGGTGAGATCCGCCTCCAGTGACACCAGCGAGGAGCTGAATTCCCAAGACAGCCCCCCAAAACAGGACTCCACAGCGCCCTCGTCTACCTCCTCCTCCGACCCCATCCTAGACTTCAACATCTCCCTGGCCATGGCCAAAGAGAGGGCCCACCAGAAACGCAGCAGCAAACGGGCCCCGCAGATGGACTGGAGCAAGAAAAACGAACTCTTCAGCAACCTCTGA MAGEITETGELYSSYVFVRVVKPNKIAMLFIMLIPGWARWLTPVIPALWEAEAGRSPEVRSSRPAWPTCFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPILSVQRRGSPNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSATGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLVPCLCPSPMGRYRRRTVVKPWQRQPWRAPGQPW*DPPPVTPARS*IPKTAPQNRTPQRPRLPPPPTPS*TSTSPWPWPKRGPTRNAAANGPRRWTGARKTNSSATS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33497 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2417 TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402173:- chr17:37408916-37558776:- chr17:37558426:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame F-box-like-PARTIAL|29-48~|1.8e-19^F-box-PARTIAL|29-48~|3.7e-12^F-box_4-PARTIAL|29-48~|1e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:9.53Mb] 152 16 152 6.59 ONLY_REF_SPLICE YES_LDAS 1.9647 GT 1.8892 AG 1.8256 ENST00000577399.5 1-48 ENST00000576353.5 106-162 chr17|-|[2]39402173-39402220[0]<==>chr17|-|[2]48937068-48937124[0] atggctccgagcagggaccgcctgctgcactttgggttcaaggcgacaCTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGGGACTTCTATTACGAACTAG MAPSRDRLLHFGFKATLEKDFGLRCWAWGTSITN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33498 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2416 TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39401361:- chr17:37408916-37558776:- chr17:37557614:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame F-box-like-PARTIAL|27-42~|1.8e-19^F-box-PARTIAL|27-42~|3.6e-12^F-box_4-PARTIAL|27-42~|1e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:9.53Mb] 147 86 147 79.41 ONLY_REF_SPLICE YES_LDAS 2.8049 GT 1.7819 AG 1.8256 ENST00000583610.5 1-42 ENST00000576353.5 106-162 chr17|-|[2]39401361-39401402[0]<==>chr17|-|[2]48937068-48937124[0] atgaggagggacgtgaacggagtgaccaagagcaggtttgagCTGGAAAAGGATTTTGGTCTGAGATGCTGGGCGTGGGGGACTTCTATTACGAACTAG MRRDVNGVTKSRFELEKDFGLRCWAWGTSITN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33499 MTMR1::CABIN1 ENSG00000063601.17::ENSG00000099991.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MTMR1 ENSG00000063601.17 protein_coding + + chrX:150692971-150765108:+ chrX:150737448:+ chrX:149861444-149933581:+ chrX:149905920:+ CABIN1 ENSG00000099991.18 protein_coding + + chr22:24011192-24178628:+ chr22:24035444:+ chr22:24407642-24574596:+ chr22:24431892:+ chrX:150742966,chrX:150742967 chr22:24027547,chr22:24027545 NA NA chrX:149911438,chrX:149911439 chr22:24423995,chr22:24423993 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chrX--chr22] 141 80 141 80 ONLY_REF_SPLICE YES_LDAS 2.7379 GT 1.9899 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33500 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2420 TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49677933:- chr17:47676246-47755525:- chr17:47755295:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SPOP:Oncogene","SPOP:FoundationOne_panel","SPOP:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.99Mb] 112 20 112 16.35 ONLY_REF_SPLICE YES_LDAS 1.5901 GT 1.6402 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 33501 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230714321:- chr1:230826522-230881322:- chr1:230850067:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:16.32Mb] 112 186 112 171.14 INCL_NON_REF_SPLICE YES_LDAS 3.5077 GT 1.6895 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33503 PDCD6::SDHA ENSG00000249915.9::ENSG00000073578.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2422 FALSE NA FALSE NA PDCD6 ENSG00000249915.9 protein_coding + + chr5:271621-314974:+ chr5:272772:+ chr5:271736-315089:+ chr5:272887:+ SDHA ENSG00000073578.18 protein_coding + + chr5:218303-257082:+ chr5:254393:+ chr5:218418-257197:+ chr5:254508:+ chr5:287710,chr5:287706,chr5:287706 chr5:252229,chr5:251945,chr5:252222 NA NA chr5:287825,chr5:287821,chr5:287821 chr5:252344,chr5:252060,chr5:252337 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame EF-hand_10|24-49|0.0091^EF-hand_6|28-53|4.7e-08^EF-hand_1|29-53|8.7e-08^SPARC_Ca_bdg|29-50|0.045^EF-hand_7|30-88|4e-11^EF-hand_5|31-50|9.9e-08^EF-hand_8|32-50|0.0025^EF-hand_9|32-88|0.0039^EF-hand_8|40-89|5.1e-06^WWE|54-74|0.033^EF-hand_1|65-90|0.00024^EF-hand_6|66-86|0.09^SPARC_Ca_bdg|79-120|0.0056^WWE|88-114|0.003^EF-hand_7|93-152|9.4e-16^EF-hand_1|94-120|2.8e-10^EF-hand_6|94-120|9.7e-11^EF-hand_8|96-119|5.6e-06^EF-hand_10|97-116|0.044^EF-hand_5|98-117|4.4e-08^EF-hand_9|98-150|0.00028^EF-hand_8|115-151|9.5e-07^EF-hand_1|132-153|9.6e-05^EF-hand_5|133-138|2.8^EF-hand_6|134-153|0.00038^EF-hand_7-PARTIAL|158-163~|7.8e-05^EF-hand_1-PARTIAL|159-163~|0.00012^EF-hand_6-PARTIAL|159-163~|9.5e-06^EF-hand_8-PARTIAL|159-163~|0.005^EF-hand_5-PARTIAL|161-163~|0.00015^EF-hand_10-PARTIAL|161-163~|1.2 none ["PDCD6:Oncogene"];["SDHA:ArcherDX_panel","SDHA:FoundationOne_panel"];["TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:0.01Mb];LOCAL_REARRANGEMENT:+:[14921] 78 56 77.65 55.68 ONLY_REF_SPLICE YES_LDAS 1.6518 GT 1.8892 AG 1.7465 ENST00000507528.5 1-163 ENST00000264932.11 1795-1995 chr5|+|[0]271721-271821[1]|[2]272711-272772[0]<==>chr5|+|[0]254393-254506[2]|[0]256334-256420[2] atggccgcctactcttaccgccccggccctggggccggccctgggcctgctgcaggcgcggcgctgccggaccagagcttcctgtggaacgttttccagagggtcgataaagacaggagtggagtgatatcagacaccgagcttcagcaagctctctccaacgGTGCGGATTGATGAGTACGATTACTCCAAGCCCATCCAGGGGCAACAGAAGAAGCCCTTTGAGGAGCACTGGAGGAAGCACACCCTGTCCTATGTGGACGTTGGCACTGGGAAGGTCACTCTGGAATATAGACCCGTGATCGACAAAACTTTGAACGAGGCTGACTGTGCCACCGTCCCGCCAGCCATTCGCTCCTACTGA MAAYSYRPGPGAGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGAD**VRLLQAHPGATEEAL*GALEEAHPVLCGRWHWEGHSGI*TRDRQNFERG*LCHRPASHSLLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung squamous cell carcinoma LUNG no_match 272887|271936 TRUE|FALSE 240473|240473 FALSE|FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 1 Yes GIST, paraganglioma paraganglioma paragangliomas-5 (PGL5) mesenchymal, other TSG missense, nonsense 33504 PPP1CB::PLB1 ENSG00000213639.11::ENSG00000163803.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2423 FALSE NA FALSE NA PPP1CB ENSG00000213639.11 protein_coding + + chr2:28751640-28802940:+ chr2:28788809:+ chr2:28974506-29025806:+ chr2:29011675:+ PLB1 ENSG00000163803.13 protein_coding + + chr2:28457145-28644142:+ chr2:28628563:+ chr2:28680012-28867008:+ chr2:28851430:+ chr2:28792055,chr2:28792054 chr2:28628124,chr2:28628120 NA NA chr2:29014921,chr2:29014920 chr2:28850991,chr2:28850987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame STPPase_N|8-55|1.6e-24^Metallophos|58-291|4.3e-47 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr2:0.11Mb] 71 32 71 32 ONLY_REF_SPLICE YES_LDAS 1.276 GT 1.9899 AG 1.8323 ENST00000703174.1 1-867 ENST00000404858.5 3624-4340 chr2|+|[0]28752125-28752176[0]|[1]28776851-28776982[0]|[1]28778809-28779039[0]|[1]28780109-28780231[0]|[1]28781738-28781842[0]|[1]28783907-28783978[0]|[1]28788658-28788809[2]<==>chr2|+|[0]28628563-28628628[2]|[0]28629094-28629185[1]|[2]28630586-28630664[2]|[0]28632036-28632140[2]|[0]28632944-28633039[2]|[0]28640927-28641001[2]|[0]28642858-28643061[2] atggcggacggggagctgaacgtggacagcctcatcacccggctgctggaggtacgaggatgtcgtccaggaaagattgtgcagatgactgaagcagaagttcgaggcttatgtatcaagtctcgggagatctttctcagccagcctattcttttggaattggaagcaccgctgaaaatttgtggagatattcatggacaatatacagatttactgagattatttgaatatggaggtttcccaccagaagccaactatcttttcttaggagattatgtggacagaggaaagcagtctttggaaaccatttgtttgctattggcttataaaatcaaatatccagagaacttctttctcttaagaggaaaccatgagtgtgctagcatcaatcgcatttatggattctatgatgaatacggagtctcgctcttcttgcccaggctggagtgcaatggcacgatctcagctcactgcaacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgattagctgggattacaggcaaacgaagatttaatattaaattgtggaagaccttcactgattgttttaactgtctgcctatagcagccattgtggatgagaagatcttctgttgtcatggaggattgtcaccagacctgcaatctatggagcagattcggagaattatgagacctactgatgtccctgatacaggtttgctctgtgatttgctatggtctgatccagataaggatgtgcaaggctggggagaaaatgatcgtggtgtttcctttacttttggagctgatgtagtcagtaaatttctgaatcgtcatgatttagatttgatttgtcgagctcatcagGAGGCCCACTTGGCCACGGAATATGTTCAGCACATCCAACAGGCCCTGGACATCCTCTCTGAGGAGCTCCCAAGGGCTTTCGTCAACGTGGTGGAGGTCATGGAGCTGGCTAGCCTGTACCAGGGCCAAGGCGGGAAATGTGCCATGCTGGCAGCTCAGAACAACTGCACTTGCCTCAGACACTCGCAAAGCTCCCTGGAGAAGCAAGAACTGAAGAAAGTGAACTGGAACCTCCAGCATGGCATCTCCAGTTTCTCCTACTGGCACCAATACACACAGCGTGAGGACTTTGCGGTTGTGGTGCAGCCTTTCTTCCAAAACACACTCACCCCACTGAACGAGAGAGGGGACACTGACCTCACCTTCTTCTCCGAGGACTGTTTTCACTTCTCAGACCGCGGGCATGCCGAGATGGCCATCGCACTCTGGAACAACATGCTGGAACCAGTGGGCCGCAAGACTACCTCCAACAACTTCACCCACAGCCGAGCCAAACTCAAGTGCCCCTCTCCTGAGAGCCCTTACCTCTACACCCTGCGGAACAGCCGATTGCTCCCAGACCAGGCTGAAGAAGCCCCCGAGGTGCTCTACTGGGCTGTCCCAGTGGCAGCGGGAGTCGGCCTTGTGGTGGGCATCATCGGGACAGTGGTCTGGAGGTGCAGGAGAGGTGGCCGGAGGGAAGATCCTCCAATGAGCCTGCGCACTGTGGCCCTCTAG MADGELNVDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDEYGVSLFLPRLECNGTISAHCNLRLPGSSDSPASASRLAGITGKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQEAHLATEYVQHIQQALDILSEELPRAFVNVVEVMELASLYQGQGGKCAMLAAQNNCTCLRHSQSSLEKQELKKVNWNLQHGISSFSYWHQYTQREDFAVVVQPFFQNTLTPLNERGDTDLTFFSEDCFHFSDRGHAEMAIALWNNMLEPVGRKTTSNNFTHSRAKLKCPSPESPYLYTLRNSRLLPDQAEEAPEVLYWAVPVAAGVGLVVGIIGTVVWRCRRGGRREDPPMSLRTVAL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Adrenal no_match TRUE Ovarian serous cystadenocarcinoma,Breast invasive carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma OVARY,BREAST,STOMACH,BREAST exact 28999848,28975042|28975042,29006844,28975042 FALSE,FALSE|FALSE,FALSE,FALSE 28796064,28804935|28808628,28820872,28785908 FALSE,FALSE|FALSE,FALSE,FALSE PARTIALLY,PARTIALLY,PARTIALLY,YES In-frame,Out-of-frame,Out-of-frame,In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33505 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230710853:- chr1:230826522-230881322:- chr1:230846599:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:16.32Mb] 51 77 51 14.34 ONLY_REF_SPLICE YES_LDAS 0.8095 GT 1.6895 AG 1.7968 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33506 NAP1L1::NAV3 ENSG00000187109.15::ENSG00000067798.16 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2424 FALSE NA FALSE NA NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76084567:- chr12:76430365-76478515:- chr12:76478347:- NAV3 ENSG00000067798.16 protein_coding + + chr12:77324641-78213010:+ chr12:77571859:+ chr12:77718421-78606790:+ chr12:77965639:+ chr12:76079979,chr12:76079968,chr12:76079934,chr12:76079933,chr12:76079974,chr12:76079920,chr12:76076885,chr12:76076910,chr12:76076931,chr12:76076875,chr12:76076871,chr12:76076867,chr12:76076924,chr12:76076914,chr12:76076913,chr12:76076907 chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77494836,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696,chr12:77544696 NA NA chr12:76473759,chr12:76473748,chr12:76473714,chr12:76473713,chr12:76473754,chr12:76473700,chr12:76470665,chr12:76470690,chr12:76470711,chr12:76470655,chr12:76470651,chr12:76470647,chr12:76470704,chr12:76470694,chr12:76470693,chr12:76470687 chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77888616,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476,chr12:77938476 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.75Mb] 48 29 48 29 ONLY_REF_SPLICE YES_LDAS 0.954 GT 1.9219 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33508 FBXL20::SNF8 ENSG00000108306.13::ENSG00000159210.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4418 TRUE 1673 FBXL20 ENSG00000108306.13 protein_coding - - chr17:39252663-39402523:- chr17:39402470:- chr17:37408916-37558776:- chr17:37558723:- SNF8 ENSG00000159210.10 protein_coding - - chr17:48929316-48944842:- chr17:48937124:- chr17:47006678-47022204:- chr17:47014486:- chr17:39392434,chr17:39392442,chr17:39392798,chr17:39392917,chr17:39392132,chr17:39392462 chr17:48939581,chr17:48939585,chr17:48939667,chr17:48939180,chr17:48939585,chr17:48940094 NA NA chr17:37548687,chr17:37548695,chr17:37549051,chr17:37549170,chr17:37548385,chr17:37548715 chr17:47016943,chr17:47016947,chr17:47017029,chr17:47016542,chr17:47016947,chr17:47017456 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:9.53Mb] 38 0 38 0 INCL_NON_REF_SPLICE YES_LDAS 0.4708 GT 1.6402 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33509 CATSPERG::CARD8 ENSG00000099338.23::ENSG00000105483.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2429 FALSE NA FALSE NA CATSPERG ENSG00000099338.23 protein_coding + + chr19:38335775-38370943:+ chr19:38344368:+ chr19:38826415-38861583:+ chr19:38835008:+ CARD8 ENSG00000105483.18 protein_coding - - chr19:48180770-48255946:- chr19:48249847:- chr19:48684027-48759203:- chr19:48753104:- chr19:38351998,chr19:38351778 chr19:48252996,chr19:48253372 NA NA chr19:38842638,chr19:38842418 chr19:48756253,chr19:48756629 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CARD8:Oncogene"];["DepMap2023"];INTRACHROMOSOMAL[chr19:9.81Mb] 32 8 32 8 ONLY_REF_SPLICE YES_LDAS 0.4955 GT 1.6402 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33511 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2426 TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76537004:- chr12:76745577-76953589:- chr12:76930784:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76068994:- chr12:76430365-76478515:- chr12:76462774:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.27Mb] 28 21 28 15.42 ONLY_REF_SPLICE YES_LDAS 0.5379 GT 1.9329 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33512 NUDT3::ILRUN ENSG00000272325.2::ENSG00000196821.10 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2431 FALSE NA FALSE NA NUDT3 ENSG00000272325.2 protein_coding - - chr6:34279679-34392669:- chr6:34392264:- chr6:34247456-34360446:- chr6:34360041:- ILRUN ENSG00000196821.10 protein_coding - - chr6:34587288-34696859:- chr6:34606904:- chr6:34555065-34664636:- chr6:34574681:- chr6:34386044,chr6:34386047 chr6:34634862,chr6:34634862 NA NA chr6:34353821,chr6:34353824 chr6:34602639,chr6:34602639 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NUDIX-PARTIAL|20-99~|5.1e-23 none none 26 6 26 6 ONLY_REF_SPLICE YES_LDAS 0.3964 GT 1.231 AG 1.9086 ENST00000607016.2 1-99 ENST00000374026.7 314-699 chr6|-|[2]34392264-34392362[0]<==>chr6|-|[2]34590565-34590600[0]|[2]34606555-34606904[1] atgatgaagctcaagtcgaaccagacccgcacctacgacggcgacggctacaagaagcgggccgcatgcctgtgtttccgcagcgagagcgaggaggagATGTCATCTGGGTGATTCTCAGTGTGGAGGTGGGTGGACTTTTAGGAGTAACGCAGCAGCTGTCATCTTTTGAAACGGAGTTCAACACACAGCCGCATCGTAAGGTAGAAGGAAACTTCAACCCTTTTGCCTCTCCCCAAAAGAACCGACAATCAGATGAAAACAACTTAAAAGACCCTGGGGGCTCCGAGTTCGACTCGATCAGCAAAAACACATGGGCTCCTGCTCCTGACACATGGGCTCCTGCTCCTGACCAAACTGAGCAAGACCAGAATAGACTGTCACAGAACTCTGTAAATCTGTCTCCCAGCAGTCACGCAAACAACTTATCAGTAGTGACTTACAGTAAGGGGCTCCATGGGCCTTACCCCTTCGGCCAGTCTTAA MMKLKSNQTRTYDGDGYKKRAACLCFRSESEEEMSSG*FSVWRWVDF*E*RSSCHLLKRSSTHSRIVR*KETSTLLPLPKRTDNQMKTT*KTLGAPSSTRSAKTHGLLLLTHGLLLLTKLSKTRIDCHRTL*ICLPAVTQTTYQ**LTVRGSMGLTPSASL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33514 GBF1::MRC2 ENSG00000107862.7::ENSG00000011028.14 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2432 FALSE NA FALSE NA GBF1 ENSG00000107862.7 protein_coding + + chr10:102245371-102382899:+ chr10:102260116:+ chr10:104005128-104142656:+ chr10:104019873:+ MRC2 ENSG00000011028.14 protein_coding + + chr17:62627670-62693597:+ chr17:62664548:+ chr17:60705031-60770958:+ chr17:60741909:+ chr10:102292478,chr10:102292476 chr17:62660267,chr17:62660262 NA NA chr10:104052235,chr10:104052233 chr17:60737628,chr17:60737623 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Sec7-like_HDS|63-93|0.11^DUF758|115-162|6.4e-05^Sec7-like_HUS-PARTIAL|151-163~|2 fn2|187-228|9e-20^UL45|243-284|0.046^Chordopox_A33R|246-275|0.042^Xlink|254-281|0.0045^Lectin_C|256-361|1.7e-26^Chordopox_A33R|373-419|0.00011^UL45|381-511|0.00025^Lectin_C|400-506|2.1e-27^Xlink|400-423|1.3^Xlink|506-526|0.39^UL45|520-583|6.1e-06^Chordopox_A33R|529-557|0.032^Xlink|538-560|0.0047^Lectin_C|539-645|1.1e-19^UL45|666-790|0.027^Xlink|668-685|0.17^Xlink|685-714|0.025^Lectin_C|694-809|8.2e-19^Xlink|843-863|0.62^Lectin_C|844-952|7.8e-24^DUF4381|857-885|3.6^UL45|968-1015|5.2e-07^DUF4381|974-1005|0.35^Chordopox_A33R|976-1012|0.44^Xlink|983-1021|0.00025^Lectin_C|995-1109|3.8e-20^Xlink|1143-1163|0.34^Lectin_C|1144-1243|9.3e-17^UL45|1267-1298|0.47^Chordopox_A33R|1271-1323|0.018^Xlink|1286-1305|0.52^Lectin_C|1289-1394|1.8e-15^DUF4381|1407-1446|0.00022^UL45|1414-1437|0.92 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr17] 17 7 17 7 ONLY_REF_SPLICE YES_LDAS 0.2973 GT 1.7232 AG 1.7465 ENST00000673650.1 1-163 ENST00000303375.10 119-4440 chr10|+|[0]102258939-102259034[2]|[0]102260050-102260116[0]<==>chr17|+|[1]62664548-62664949[0]|[1]62666094-62666267[0]|[1]62666455-62666619[0]|[1]62666757-62666870[0]|[1]62667390-62667533[0]|[1]62671649-62671837[0]|[1]62671998-62672152[2]|[0]62674063-62674170[2]|[0]62675790-62675905[1]|[2]62676383-62676531[0]|[1]62677269-62677486[2]|[0]62678504-62678646[1]|[2]62679800-62679902[2]|[0]62680170-62680308[0]|[1]62680418-62680453[0]|[1]62680800-62680960[2]|[0]62681062-62681129[1]|[2]62681837-62681937[0]|[1]62682235-62682377[2]|[0]62688289-62688403[0]|[1]62688501-62688664[2]|[0]62688852-62688960[0]|[1]62689522-62689760[2]|[0]62689894-62690062[0]|[1]62690156-62690305[0]|[1]62690642-62690761[0]|[1]62690949-62691128[0]|[1]62692112-62692138[0]|[1]62692231-62692451[2] atggtggataagaatatttacatcattcaaggggagattaacattgtggttggggccatcaaacgaaatgcccgatggagcacccatacaccactggatgaagaacgggatcctctgctgcatagtttcggtcatctaaaggaggttttaaacagtataacagAACCCAACGTCTTCCTCATCTTCAGCCATGGACTGCAGGGCTGCCTGGAGGCCCAGGGCGGGCAGGTCAGAGTCACCCCGGCTTGCAATACCAGCCTCCCTGCCCAGCGCTGGAAGTGGGTCTCCCGAAACCGGCTATTCAACCTGGGTACCATGCAGTGCCTGGGCACAGGCTGGCCAGGCACCAACACCACGGCCTCCCTGGGCATGTATGAGTGTGACCGGGAAGCACTGAATCTTCGCTGGCATTGTCGTACACTGGGTGACCAGCTGTCCTTGCTCCTGGGGGCCCGCACCAGCAACATATCCAAGCCTGGCACCCTTGAGCGTGGTGACCAGACCCGCAGTGGCCAGTGGCGCATCTACGGCAGCGAGGAGGACCTATGTGCTCTGCCCTACCACGAGGTCTACACCATCCAGGGAAACTCCCACGGAAAGCCGTGCACCATCCCCTTCAAATATGACAACCAGTGGTTCCACGGCTGCACCAGCACGGGCCGCGAGGATGGTCACCTGTGGTGTGCCACCACCCAGGACTACGGCAAAGACGAGCGCTGGGGCTTCTGCCCCATCAAGAGTAACGACTGCGAGACCTTCTGGGACAAGGACCAGCTGACTGACAGCTGCTACCAGTTTAACTTCCAGTCCACGCTGTCGTGGAGGGAGGCCTGGGCCAGCTGCGAGCAGCAGGGTGCGGATCTGCTGAGCATCACGGAGATCCACGAGCAGACCTACATCAACGGCCTCCTCACTGGGTACAGCTCCACCCTGTGGATCGGCTTGAATGACTTGGACACGAGCGGAGGCTGGCAGTGGTCGGACAACTCGCCCCTCAAGTACCTCAACTGGGAGAGTGACCAGCCGGACAACCCCAGTGAGGAGAACTGTGGAGTGATCCGCACTGAGTCCTCGGGCGGCTGGCAGAACCGTGACTGCAGCATCGCGCTGCCCTATGTGTGCAAGAAGAAGCCCAACGCCACGGCCGAGCCCACCCCTCCAGACAGGTGGGCCAATGTGAAGGTGGAGTGCGAGCCGAGCTGGCAGCCCTTCCAGGGCCACTGCTACCGCCTGCAGGCCGAGAAGCGCAGCTGGCAGGAGTCCAAGAAGGCATGTCTACGGGGCGGTGGCGACCTGGTCAGCATCCACAGCATGGCGGAGCTGGAATTCATCACCAAGCAGATCAAGCAAGAGGTGGAGGAGCTGTGGATCGGCCTCAACGATTTGAAACTGCAGATGAATTTTGAGTGGTCTGACGGGAGCCTTGTGAGCTTCACCCACTGGCACCCCTTTGAGCCCAACAACTTCCGGGACAGTCTGGAGGACTGTGTCACCATCTGGGGCCCGGAAGGCCGCTGGAACGACAGTCCCTGTAACCAGTCCTTGCCATCCATCTGCAAGAAGGCAGGCCAGCTGAGCCAGGGGGCCGCCGAGGAGGACCATGGCTGCCGGAAGGGTTGGACGTGGCACAGCCCATCCTGCTACTGGCTGGGAGAAGACCAAGTGACCTACAGTGAGGCCCGGCGCCTGTGCACTGACCATGGCTCTCAGCTGGTCACCATCACCAACAGGTTCGAGCAGGCCTTCGTCAGCAGCCTCATCTACAACTGGGAGGGCGAGTACTTCTGGACGGCCCTGCAGGACCTCAACAGCACCGGCTCCTTCTTCTGGCTCAGTGGGGATGAAGTCATGTACACCCACTGGAACCGGGACCAGCCCGGGTACAGCCGTGGGGGCTGCGTGGCGCTGGCCACTGGCAGCGCCATGGGGCTGTGGGAGGTGAAGAACTGTACCTCGTTCCGGGCCCGCTACATCTGCCGGCAGAGCCTGGGCACTCCAGTGACGCCGGAGCTGCCGGGGCCAGATCCCACGCCCAGCCTCACTGGCTCCTGTCCCCAGGGCTGGGCCTCGGACACCAAACTCCGGTATTGCTATAAGGTGTTCAGCTCAGAGCGGCTGCAGGACAAGAAGAGCTGGGTCCAGGCCCAGGGGGCCTGCCAGGAGCTGGGGGCCCAGCTGCTGAGCCTGGCCAGCTACGAGGAGGAGCACTTTGTGGCCAACATGCTCAACAAGATCTTCGGTGAATCAGAACCCGAGATCCACGAGCAGCACTGGTTCTGGATCGGCCTGAACCGTCGGGATCCCAGAGGGGGTCAGAGTTGGCGCTGGAGCGACGGCGTAGGGTTCTCTTACCACAATTTCGACCGGAGCCGGCACGACGACGACGACATCCGAGGCTGTGCGGTGCTGGACCTGGCCTCCCTGCAGTGGGTGGCCATGCAGTGCGACACACAGCTGGACTGGATCTGCAAGATCCCCAGAGGTACGGACGTGCGGGAGCCCGACGACAGCCCTCAAGGCCGACGGGAATGGCTGCGCTTCCAGGAGGCCGAGTACAAGTTCTTTGAGCACCACTCCACGTGGGCGCAGGCGCAGCGCATCTGCACGTGGTTCCAGGCCGAGCTGACCTCGGTGCACAGCCAGGCGGAGCTAGACTTCCTGAGCCACAACTTGCAGAAGTTCTCCCGGGCCCAGGAGCAGCACTGGTGGATCGGCCTGCACACCTCTGAGAGCGATGGGCGCTTCAGATGGACAGATGGTTCCATTATAAACTTCATCTCCTGGGCACCAGGCAAACCTCGGCCTGTCGGCAAGGACAAGAAGTGCGTGTACATGACAGCCAGCCGAGAGGACTGGGGGGACCAGAGGTGCCTGACAGCCTTGCCCTACATCTGCAAGCGCAGCAACGTCACCAAAGAAACGCAGCCCCCAGACCTGCCAACTACAGCCCTGGGGGGCTGCCCCTCTGACTGGATCCAGTTCCTCAACAAGTGTTTTCAGGTCCAGGGCCAGGAACCCCAGAGCCGGGTGAAGTGGTCAGAGGCACAGTTCTCCTGTGAACAGCAAGAGGCCCAGCTGGTCACCATCACAAACCCCTTAGAGCAAGCATTCATCACAGCCAGCCTGCCCAATGTGACCTTTGACCTTTGGATTGGCCTCCATGCCTCGCAGAGGGACTTCCAGTGGGTGGAGCAGGAGCCTTTGATGTATGCCAACTGGGCACCTGGGGAGCCCTCTGGCCCTAGCCCTGCTCCCAGTGGCAACAAACCGACCAGCTGTGCAGTGGTCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGACGATCGGAGCTGCACGGAGGAGACCCATGGCTTCATCTGCCAGAAGGGCACGGACCCCTCCCTGAGCCCGTCCCCAGCAGCGCTGCCCCCCGCCCCGGGCACTGAGCTCTCCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTGCGCTGGCACGATGCCCTCCTGCTGTGTGAGAGCCGCAATGCCAGCCTGGCCTACGTGCCCGACCCCTACACCCAGGCCTTCCTCACGCAGGCTGCCCGAGGGCTGCGCACGCCGCTCTGGATTGGGCTGGCTGGCGAGGAGGGCTCTCGGCGGTACTCCTGGGTCTCAGAGGAGCCGCTGAACTACGTGGGCTGGCAGGACGGGGAGCCGCAGCAGCCGGGGGGCTGTACCTACGTAGATGTGGACGGGGCCTGGCGCACCACCAGCTGTGACACCAAGCTGCAGGGGGCTGTGTGTGGGGTTAGCAGTGGGCCCCCTCCTCCCCGAAGAATAAGCTACCATGGCAGCTGTCCCCAGGGACTGGCAGACTCCGCGTGGATTCCCTTCCGGGAGCACTGCTATTCTTTCCACATGGAGCTGCTGCTGGGCCACAAGGAGGCGCGACAGCGCTGCCAGAGAGCGGGTGGGGCCGTCCTGTCTATCCTGGATGAGATGGAGAATGTGTTTGTCTGGGAGCACCTGCAGAGCTATGAGGGCCAGAGTCGGGGCGCCTGGCTGGGCATGAACTTCAACCCCAAAGGAGGCACTCTGGTCTGGCAGGACAACACAGCTGTGAACTACTCCAACTGGGGGCCCCCGGGCTTGGGCCCCAGCATGCTGAGCCACAACAGCTGCTACTGGATTCAGAGCAACAGCGGGCTATGGCGCCCCGGCGCTTGCACCAACATCACCATGGGTGTCGTCTGCAAGCTTCCTCGTGCTGAGCAGAGCAGCTTCTCCCCATCAGCGCTTCCAGAGAACCCAGCGGCCCTGGTGGTGGTGCTGATGGCGGTGCTGCTGCTCCTGGCCTTGCTGACCGCAGCCCTCATCCTTTACCGGAGGCGCCAGAGCATCGAGCGCGGGGCCTTTGAGGGTGCCCGCTACAGCCGCAGCAGCTCCAGCCCCACCGAGGCCACTGAGAAGAACATCCTGGTGTCAGACATGGAAATGAATGAGCAACAAGAATAG MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITEPNVFLIFSHGLQGCLEAQGGQVRVTPACNTSLPAQRWKWVSRNRLFNLGTMQCLGTGWPGTNTTASLGMYECDREALNLRWHCRTLGDQLSLLLGARTSNISKPGTLERGDQTRSGQWRIYGSEEDLCALPYHEVYTIQGNSHGKPCTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWGFCPIKSNDCETFWDKDQLTDSCYQFNFQSTLSWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDLDTSGGWQWSDNSPLKYLNWESDQPDNPSEENCGVIRTESSGGWQNRDCSIALPYVCKKKPNATAEPTPPDRWANVKVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSLPSICKKAGQLSQGAAEEDHGCRKGWTWHSPSCYWLGEDQVTYSEARRLCTDHGSQLVTITNRFEQAFVSSLIYNWEGEYFWTALQDLNSTGSFFWLSGDEVMYTHWNRDQPGYSRGGCVALATGSAMGLWEVKNCTSFRARYICRQSLGTPVTPELPGPDPTPSLTGSCPQGWASDTKLRYCYKVFSSERLQDKKSWVQAQGACQELGAQLLSLASYEEEHFVANMLNKIFGESEPEIHEQHWFWIGLNRRDPRGGQSWRWSDGVGFSYHNFDRSRHDDDDIRGCAVLDLASLQWVAMQCDTQLDWICKIPRGTDVREPDDSPQGRREWLRFQEAEYKFFEHHSTWAQAQRICTWFQAELTSVHSQAELDFLSHNLQKFSRAQEQHWWIGLHTSESDGRFRWTDGSIINFISWAPGKPRPVGKDKKCVYMTASREDWGDQRCLTALPYICKRSNVTKETQPPDLPTTALGGCPSDWIQFLNKCFQVQGQEPQSRVKWSEAQFSCEQQEAQLVTITNPLEQAFITASLPNVTFDLWIGLHASQRDFQWVEQEPLMYANWAPGEPSGPSPAPSGNKPTSCAVVLHSPSAHFTGRWDDRSCTEETHGFICQKGTDPSLSPSPAALPPAPGTELSYLNGTFRLLQKPLRWHDALLLCESRNASLAYVPDPYTQAFLTQAARGLRTPLWIGLAGEEGSRRYSWVSEEPLNYVGWQDGEPQQPGGCTYVDVDGAWRTTSCDTKLQGAVCGVSSGPPPPRRISYHGSCPQGLADSAWIPFREHCYSFHMELLLGHKEARQRCQRAGGAVLSILDEMENVFVWEHLQSYEGQSRGAWLGMNFNPKGGTLVWQDNTAVNYSNWGPPGLGPSMLSHNSCYWIQSNSGLWRPGACTNITMGVVCKLPRAEQSSFSPSALPENPAALVVVLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEATEKNILVSDMEMNEQQE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33516 TRIOBP::GGA1 ENSG00000100106.22::ENSG00000100083.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TRIOBP ENSG00000100106.22 protein_coding + + chr22:37697048-37776556:+ chr22:37751828:+ chr22:38093055-38172563:+ chr22:38147835:+ GGA1 ENSG00000100083.19 protein_coding + + chr22:37608725-37633564:+ chr22:37630903:+ chr22:38004732-38029571:+ chr22:38026910:+ chr22:37753803,chr22:37753802 chr22:37630210,chr22:37630206 NA NA chr22:38149810,chr22:38149809 chr22:38026217,chr22:38026213 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["GGA1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.06Mb];LOCAL_REARRANGEMENT:+:[63440] 15 1 15 1 ONLY_REF_SPLICE YES_LDAS 0.1982 GT 1.7465 AG 1.5656 ENST00000413051.2 1-245 ENST00000406772.5 1113-1701 chr22|+|[0]37746322-37746420[2]|[0]37750642-37750730[1]|[2]37751772-37751828[1]<==>chr22|+|[2]37630903-37631099[0]|[1]37631996-37632165[2]|[0]37632405-37632515[2]|[0]37632601-37632711[2] ggcggcggcggcggggttcccgcgccgcggagcccggcccgagagccgcgtccacgttcctgcctcctgctcccgccgccctggggcgccgccatgacggtatacagggaggggctgggatgccaacctactgggtcccccgactgtggctgtggaaggttctggatcttcagctgtcccaagccccgcccgatctgctcaacttcaagaagggatggatgtcgatcttggacgagcctggagagGGAGAAGCAGCAGCCAACCCCCCGGCTCACACTCCGGGACCTGCAGAATAAGAGCAGCAGCTGCAGCTCCCCCAGCTCCAGCGCCACCAGCCTTCTCCACACCGTGTCCCCAGAGCCCCCCAGGCCTCCGCAGCAGCCCGTACCAACCGAGCTCTCACTGGCCAGCATCACTGTGCCCCTGGAGTCCATCAAACCCAGCAACATCCTGCCCGTGACTGTGTATGACCAGCACGGCTTCCGCATCCTCTTCCATTTTGCCCGGGACCCACTGCCAGGGCGCTCCGACGTGCTGGTGGTGGTGGTTTCCATGCTGAGCACCGCCCCCCAGCCCATCCGCAACATCGTGTTCCAGTCAGCTGTCCCCAAGGTTATGAAGGTGAAGCTGCAGCCACCCTCGGGCACGGAGCTGCCAGCTTTTAACCCCATCGTCCACCCCTCAGCAATCACCCAGGTCCTGCTGCTTGCCAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCACCTTCACCATGGGTGACCAGACCTACAACGAGATGGGGGATGTGGACCAGTTCCCCCCACCTGAAACCTGGGGTAGCCTCTAG GGGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTVYREGLGCQPTGSPDCGCGRFWIFSCPKPRPICSTSRRDGCRSWTSLEREKQQPTPRLTLRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLASITVPLESIKPSNILPVTVYDQHGFRILFHFARDPLPGRSDVLVVVVSMLSTAPQPIRNIVFQSAVPKVMKVKLQPPSGTELPAFNPIVHPSAITQVLLLANPQKEKVRLRYKLTFTMGDQTYNEMGDVDQFPPPETWGSL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33517 PHF8::NEBL ENSG00000172943.21::ENSG00000078114.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PHF8 ENSG00000172943.21 protein_coding - - chrX:53936676-54048958:- chrX:54011122:- chrX:53963109-54075391:- chrX:54037555:- NEBL ENSG00000078114.19 protein_coding - - chr10:20779973-21293011:- chr10:20899450:- chr10:21068902-21581940:- chr10:21188379:- chrX:54006932,chrX:54006934 chr10:20928673,chr10:20928672 NA NA chrX:54033365,chrX:54033367 chr10:21217602,chr10:21217601 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chrX--chr10] 15 7 15 7 ONLY_REF_SPLICE YES_LDAS 0.2725 GT 1.7819 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33518 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51898930:- chr8:52730135-52811746:- chr8:52811490:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34007856:+ chr8:33462374-33896622:+ chr8:33865374:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 15 14 10.41 ONLY_REF_SPLICE YES_LDAS 0.3024 GT 1.6402 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33519 FYCO1::HRAS ENSG00000163820.16::ENSG00000174775.18 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA FYCO1 ENSG00000163820.16 protein_coding - - chr3:45917903-45995824:- chr3:45955249:- chr3:45959395-46037316:- chr3:45996741:- HRAS ENSG00000174775.18 protein_coding - - chr11:532242-537321:- chr11:534375:- chr11:532242-537321:- chr11:534375:- chr3:45940895,chr3:45940900 chr11:534604,chr11:534608 NA NA chr3:45982387,chr3:45982392 chr11:534604,chr11:534608 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["HRAS:FoundationOne_panel","HRAS:OncomapV4_panel","HRAS:OncocartaV1_panel","HRAS:Oncogene","HRAS:ArcherDX_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr3--chr11] 14 12 14 10.54 ONLY_REF_SPLICE YES_LDAS 0.304 GT 1.8892 AG 1.6729 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE v-Ha-ras Harvey rat sarcoma viral oncogene homolog 1 Yes infrequent sarcomas, rare other tumour types rhabdomyosarcoma, ganglioneuroblastoma, bladder Costello syndrome epithelial, leukaemia_lymphoma, mesenchymal oncogene missense 33520 ZNF670::AGT ENSG00000277462.2::ENSG00000135744.9 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2415 TRUE 4416 TRUE 1671 ZNF670 ENSG00000277462.2 protein_coding - - chr1:247034637-247078811:- chr1:247078594:- chr1:247197939-247242113:- chr1:247241896:- AGT ENSG00000135744.9 protein_coding - - chr1:230690776-230745576:- chr1:230706200:- chr1:230826522-230881322:- chr1:230841946:- chr1:247078079,chr1:247078083 chr1:230716426,chr1:230716427 NA NA chr1:247241381,chr1:247241385 chr1:230852172,chr1:230852173 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:16.32Mb] 13 14 13 0.52 ONLY_REF_SPLICE YES_LDAS 0.1675 GT 1.6895 AG 1.6895 ENST00000366503.3 1-3 ENST00000680041.1 830-1431 chr1|-|[2]247078594-247078596[0]<==>chr1|-|[2]230703141-230703329[0]|[2]230704193-230704337[2]|[1]230705933-230706200[1] atgGGAAGATGAAGGGCTTCTCCCTGCTGGCCGAGCCCCAGGAGTTCTGGGTGGACAACAGCACCTCAGTGTCTGTTCCCATGCTCTCTGGCATGGGCACCTTCCAGCACTGGAGTGACATCCAGGACAACTTCTCGGTGACTCAAGTGCCCTTCACTGAGAGCGCCTGCCTGCTGCTGATCCAGCCTCACTATGCCTCTGACCTGGACAAGGTGGAGGGTCTCACTTTCCAGCAAAACTCCCTCAACTGGATGAAGAAACTATCTCCCCGGACCATCCACCTGACCATGCCCCAACTGGTGCTGCAAGGATCTTATGACCTGCAGGACCTGCTCGCCCAGGCTGAGCTGCCCGCCATTCTGCACACCGAGCTGAACCTGCAAAAATTGAGCAATGACCGCATCAGGGTGGGGGAGGTGCTGAACAGCATTTTTTTTGAGCTTGAAGCGGATGAGAGAGAGCCCACAGAGTCTACCCAACAGCTTAACAAGCCTGAGGTCTTGGAGGTGACCCTGAACCGCCCATTCCTGTTTGCTGTGTATGATCAAAGCGCCACTGCCCTGCACTTCCTGGGCCGCGTGGCCAACCCGCTGAGCACAGCATGA MGR*RASPCWPSPRSSGWTTAPQCLFPCSLAWAPSSTGVTSRTTSR*LKCPSLRAPACC*SSLTMPLTWTRWRVSLSSKTPSTG*RNYLPGPST*PCPNWCCKDLMTCRTCSPRLSCPPFCTPS*TCKN*AMTASGWGRC*TAFFLSLKRMRESPQSLPNSLTSLRSWR*P*TAHSCLLCMIKAPLPCTSWAAWPTR*AQH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33522 SPOP::SRCIN1 ENSG00000121067.19::ENSG00000277363.5 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2421 TRUE 4422 TRUE 1675 SPOP ENSG00000121067.19 protein_coding - - chr17:49598884-49678163:- chr17:49636759:- chr17:47676246-47755525:- chr17:47714121:- SRCIN1 ENSG00000277363.5 protein_coding - - chr17:38530031-38605952:- chr17:38552855:- chr17:36686266-36762205:- chr17:36709091:- chr17:49620627,chr17:49620626,chr17:49620613,chr17:49620669,chr17:49620657,chr17:49620646,chr17:49620637,chr17:49620631 chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910,chr17:38555910 NA NA chr17:47697989,chr17:47697988,chr17:47697975,chr17:47698031,chr17:47698019,chr17:47698008,chr17:47697999,chr17:47697993 chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146,chr17:36712146 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["SPOP:Oncogene","SPOP:FoundationOne_panel","SPOP:ArcherDX_panel"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.99Mb] 12 33 12 16.65 ONLY_REF_SPLICE YES_LDAS 0.355 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE speckle type POZ protein 1 Yes prostate, endometrial prostate cancer epithelial TSG missense FALSE NA NA NA NA NA NA NA NA NA 33526 HECTD4::TMEM116 ENSG00000173064.14::ENSG00000198270.13 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2434 FALSE NA FALSE NA HECTD4 ENSG00000173064.14 protein_coding - - chr12:112160188-112382439:- chr12:112273655:- chr12:112597992-112820243:- chr12:112711459:- TMEM116 ENSG00000198270.13 protein_coding - - chr12:111931282-112013185:- chr12:111943369:- chr12:112369086-112450989:- chr12:112381173:- chr12:112273233,chr12:112273239 chr12:111960778,chr12:111960781 NA NA chr12:112711037,chr12:112711043 chr12:112398582,chr12:112398585 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Arabinose_Iso_C|219-262|0.00069^HECT|934-987|1.2^Arabinose_Iso_C|1709-1767|0.00073 Fumarate_red_C-PARTIAL|~211-271|8.2e-05^GPR_Gpa2_C|234-290|3.4e-06^EBP|240-279|1.2e-05 ["DepMap2023"];INTRACHROMOSOMAL[chr12:0.15Mb] 9 6 9 5.7 ONLY_REF_SPLICE YES_LDAS 0.1821 GT 1.9086 AG 1.5301 ENST00000682272.1 1-1942 ENST00000552374.7 211-1014 chr12|-|[0]112273655-112273795[1]|[0]112274847-112274960[1]|[0]112279228-112279386[1]|[0]112283110-112283302[0]|[2]112306064-112306234[0]|[2]112308753-112308891[2]|[1]112309561-112309669[1]|[0]112313017-112313147[2]|[1]112314457-112314546[2]|[1]112319225-112319742[0]|[2]112381952-112382128[0]<==>chr12|-|[2]111931621-111931827[0]|[2]111932586-111932659[1]|[0]111933886-111934030[0]|[2]111936692-111936830[2]|[1]111937160-111937243[2]|[1]111938161-111938210[0]|[2]111943265-111943369[0] atgggctcgtcggcggccgcggcggcggcggcggcggcggccgctgactcggcgcagtggctctcggtgaaggaagagaccatcttcctgcacgacgggctgatccgggtcaccgacctggccgagctgcccagcgagatcctcggggccccagaggccgcggacaccgacctggagattttaacctttgagaccaagaacccgtcggaattagcagaacgtttgcgctctgtttgtgggaatcagagcaatgcctatgcccggctgctggaataccgcctgaatgccttgcgaggactgtggaatgcccagcgccagctggccttagaagaacagcatgaaagggaaagttcaggtgatgaggaaactttggccctgctcaaacgccagggcttgttgcagcaacctgagcaagcgcccttcacatcgaggatggggctcctgctggtcttcccccttattcagtcccagagtagaacagacccctctctctgtaacataactgctgaggtgctattgaactgccttcgtgactgccagcctttgagcttgaccaaggagcctgctgactgtctcaatggaattgaaactttgctgtgctcttggctagaggagacttctgacacaggccgacacatcccacataagcaaaaagaaaatgctgctgctgccctggtggctttggcttgtgccaggggatcattgaaaactttcgtccacacagtccatctattacagaaacagacggatctagggtccctgcctgtagctgatgtgctatataggctgttgcttttggaaggggggcctggatctccctcctgtttgcttgggggcaaacacatagtatcatggggttatgaagacatgttgcctgcgccggatagcaacactggctccagttctgaaaataaagatgctgacttgggacgctgtctcacggcagatggtctttacctgtatactactaactcagttggaagaggagtaagcaaattgggatctggattacatggtactctcagaggttttgtgtactgccggaacgaggagttggaaccaggatgggtggcttttggcagcggcagtcttctccaccggcctgtctctttcgataataaacctcactcccttttccaggtcattgaccagaacacccttcaggtgtgccaggtggtgccaatgccagccaatcacctccccattggcagcaccatgagcactgtgcacctgtcttcagatggcacttacttctattggatctggtctcctgccagcctgaatgagaaaacaccgaagggacattctgtcttcatggacatttttgaacttgtggttgaaaatggtgtatttgtagccaacccacttcaggaacgtacaattctaatgagaaaagagggcgaatctgccaaaagcattaatgagatgcttctaagtagactttctcggtatagagcctccccgtcagcaacgcttgctgccctgactggttccaccatctccaacacactgaaagaggatcaagcagcaaatactagctgtgggctgcctctaaaaatgctgcggaagacacccatatatacctgtggcacctacttggtgatgctggtgcctcctccagggggatcaggcagctctgccacccgatctctttttggtggaacaagtggtttgtcatctttaaaaatcctagcctccagcttggtgtataatatttcggatggtcagtttacaagtcgtgcagatctcatagatgctgctggaagctcactggggcgtggtgctctcgtaccaggattgggagcgtgttatgacacagtgaacaacatgctatggacatgctcaaatgactatatcgatcagtggtgtaaccctgggaatcaagccttccattatgtctgccagagacttggagtcagtcacattatcactgagcccaaagATATTCTACATTTCCTCATTTCTCTACACCGTCAATTACATCTGGTATTTGTACACAGAGCTGAGGATGAAACACACCCAGAGTGGACAGAGCACATCTCCACTGGTGATAGATTATACTTGTCGAGTTTGTCAAATGGCCTTTGTTTTCTCAAGCCTGATACCTCTGCTATTGATGACACCTGTATTCTGTCTGGGAAATACTAGTGAATGTTTCCAAAACTTCAGTCAGAGCCACAAGTGTATCTTGATGCACTCACCACCATCAGCCATGGCTGAACTTCCACCTTCTGCCAACACATCTGTCTGTAGCACACTTTATTTTTATGGTATCGCCATTTTCCTGGGCAGCTTTGTACTCAGCCTCCTTACCATTATGGTCTTACTTATCCGAGCCCAGACATTGTATAAGAAGTTTGTGAAGTCAACTGGCTTTCTGGGGAGTGAACAGTGGGCAGTGATTCACATTGTGGACCAACGGGTGCGCTTCTACCCAGTGGCCTTCTTTTGCTGCTGGGGCCCAGCTGTCATTCTAATGATCATAAAGCTGACTAAGCCACAGGACACCAAGCTTCACATGGCCCTTTATGTTCTCCAGGCTCTAACGGCAACATCTCAGGGTCTACTCAACTGTGGAGTATATGGCTGGACGCAGCACAAATTCCACCAACTAAAGCAGGAGGCTCGGCGTGATGCAGATACCCAGACACCATTATTATGCTCACAGAAGAGATTCTATAGCAGGGGCTTAAATTCACTGGAATCCACCCTGACTTTTCCTGCCAGTACTTCTACCATTTTTTGA MGSSAAAAAAAAAAADSAQWLSVKEETIFLHDGLIRVTDLAELPSEILGAPEAADTDLEILTFETKNPSELAERLRSVCGNQSNAYARLLEYRLNALRGLWNAQRQLALEEQHERESSGDEETLALLKRQGLLQQPEQAPFTSRMGLLLVFPLIQSQSRTDPSLCNITAEVLLNCLRDCQPLSLTKEPADCLNGIETLLCSWLEETSDTGRHIPHKQKENAAAALVALACARGSLKTFVHTVHLLQKQTDLGSLPVADVLYRLLLLEGGPGSPSCLLGGKHIVSWGYEDMLPAPDSNTGSSSENKDADLGRCLTADGLYLYTTNSVGRGVSKLGSGLHGTLRGFVYCRNEELEPGWVAFGSGSLLHRPVSFDNKPHSLFQVIDQNTLQVCQVVPMPANHLPIGSTMSTVHLSSDGTYFYWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVANPLQERTILMRKEGESAKSINEMLLSRLSRYRASPSATLAALTGSTISNTLKEDQAANTSCGLPLKMLRKTPIYTCGTYLVMLVPPPGGSGSSATRSLFGGTSGLSSLKILASSLVYNISDGQFTSRADLIDAAGSSLGRGALVPGLGACYDTVNNMLWTCSNDYIDQWCNPGNQAFHYVCQRLGVSHIITEPKDILHFLISLHRQLHLVFVHRAEDETHPEWTEHISTGDRLYLSSLSNGLCFLKPDTSAIDDTCILSGKY**MFPKLQSEPQVYLDALTTISHG*TSTFCQHICL*HTLFLWYRHFPGQLCTQPPYHYGLTYPSPDIV*EVCEVNWLSGE*TVGSDSHCGPTGALLPSGLLLLLGPSCHSNDHKAD*ATGHQASHGPLCSPGSNGNISGSTQLWSIWLDAAQIPPTKAGGSA*CRYPDTIIMLTEEIL*QGLKFTGIHPDFSCQYFYHFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33528 OSBPL8::NAP1L1 ENSG00000091039.17::ENSG00000187109.15 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2427 TRUE 4426 TRUE 1678 OSBPL8 ENSG00000091039.17 protein_coding - - chr12:76351797-76559809:- chr12:76537957:- chr12:76745577-76953589:- chr12:76931737:- NAP1L1 ENSG00000187109.15 protein_coding - - chr12:76036585-76084735:- chr12:76068994:- chr12:76430365-76478515:- chr12:76462774:- chr12:76536166,chr12:76536175 chr12:76069225,chr12:76069225 NA NA chr12:76929946,chr12:76929955 chr12:76463005,chr12:76463005 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:0.27Mb] 7 17 7 2.68 ONLY_REF_SPLICE YES_LDAS 0.1199 GT 1.9656 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33531 PCMTD1::ENSG00000253642 ENSG00000168300.14::ENSG00000253642.6 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4432 TRUE 1680 PCMTD1 ENSG00000168300.14 protein_coding - - chr8:51817575-51899186:- chr8:51860845:- chr8:52730135-52811746:- chr8:52773405:- ENSG00000253642 ENSG00000253642.6 lncRNA + + chr8:33604856-34039104:+ chr8:34007856:+ chr8:33462374-33896622:+ chr8:33865374:+ chr8:51846570,chr8:51846591,chr8:51846602 chr8:33983446,chr8:33983426,chr8:33983416 NA NA chr8:52759130,chr8:52759151,chr8:52759162 chr8:33840964,chr8:33840944,chr8:33840934 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 4 17 4 6.15 ONLY_REF_SPLICE YES_LDAS 0.1258 GT 1.7465 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33532 ZFP90::NFATC3 ENSG00000184939.16::ENSG00000072736.19 HCC202 SRR8616175 SRR8639160 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 2433 FALSE NA FALSE NA ZFP90 ENSG00000184939.16 protein_coding + + chr16:68530090-68576072:+ chr16:68533855:+ chr16:68563993-68609975:+ chr16:68567758:+ NFATC3 ENSG00000072736.19 protein_coding + + chr16:68084751-68229259:+ chr16:68181475:+ chr16:68118654-68263162:+ chr16:68215378:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NFATC3:Oncogene"];["DEEPEST2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.30Mb] 3 7 3 7 ONLY_REF_SPLICE YES_LDAS 0.1239 GT 1.8062 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33535 RAB27A::CCPG1 ENSG00000069974.17::ENSG00000260916.8 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2436 FALSE NA FALSE NA RAB27A ENSG00000069974.17 protein_coding - - chr15:55202966-55319113:- chr15:55223889:- chr15:55495164-55611311:- chr15:55516087:- CCPG1 ENSG00000260916.8 protein_coding - - chr15:55340032-55408510:- chr15:55356409:- chr15:55632230-55700708:- chr15:55648607:- chr15:55211883,chr15:55211882 chr15:55357175,chr15:55357148 NA NA chr15:55504081,chr15:55504080 chr15:55649373,chr15:55649346 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Arf|10-179|1e-14^Ras|11-182|7.2e-58^Roc|11-136|1.6e-32^RsgA_GTPase|15-30|0.0024^MMR_HSR1|15-118|4.3e-05^GTP_EFTU|65-181|4.6e-08^RsgA_GTPase|116-177|3.5e-05^TPP_enzyme_M|144-168|9.3e-05^GTP_EFTU|202-217|0.3 none ["DepMap2023"];INTRACHROMOSOMAL[chr15:0.02Mb];LOCAL_REARRANGEMENT:-:[20919] 84 88 84 88 ONLY_REF_SPLICE YES_LDAS 1.873 GT 1.8323 AG 1.8295 ENST00000697642.1 1-467 ENST00000564663.1 145-352 chr15|-|[1]55223889-55224012[1]|[0]55228609-55228712[2]|[1]55230401-55230486[0]|[2]55234782-55234934[0]<==>chr15|-|[2]55340343-55340452[1]|[0]55356312-55356409[2] atgtctgatggagattatgattacctcatcaagtttttagctttgggagactctggtgtagggaagaccagtgtactttaccaatatacagatggtaaatttaactccaaatttatcacaacagtgggcattgatttcagggaaaaaagagtggtgtacagagccagtgggccggatggagccactggcagaggccagagaatccacctgcagttatgggacacagcagggcaggagaggtttcgtagcttaacgacagcgttcttcagagatgctatgggttttcttctactttttgatctgacaaatgagcaaagtttcctcaatgtcagaaactggataagccagctacagatgcatgcatattgtgaaaacccagatatagtgctgtgtggaaacaagagtgatctggaggaccagagagtagtgaaagaggaggaagccatagcactcgcagagaaatatggTCGACCTGATAAAAAGCAACGTATGGTAAATATTGAAAACTCCAGGCATCGAAAACAAGAGCAGAAGCACCTTCAGCCACAGCCTTATAAAAGGGAAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCGCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAG MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGRPDKKQRMVNIENSRHRKQEQKHLQPQPYKREDGVLLCRPGWSAVARSRLTASSASRVHAILLPQPPE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33539 DHX34::PTK2B ENSG00000134815.19::ENSG00000120899.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2443 FALSE NA FALSE NA DHX34 ENSG00000134815.19 protein_coding + + chr19:47349315-47382704:+ chr19:47349352:+ chr19:47852572-47885961:+ chr19:47852609:+ PTK2B ENSG00000120899.18 protein_coding + + chr8:27311482-27459391:+ chr8:27397548:+ chr8:27168999-27316908:+ chr8:27255065:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr8] 30 0 30 0 ONLY_REF_SPLICE YES_LDAS 0.3267 GT 1.5301 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA TRUE hsa-mir-6842 chr8:27433370-27433434:+ FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Protein-tyrosine kinase 2-beta TK FAK Q14289 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33540 TMEM184B::DMC1 ENSG00000198792.13::ENSG00000100206.11 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2439 FALSE NA FALSE NA TMEM184B ENSG00000198792.13 protein_coding - - chr22:38219291-38273010:- chr22:38230669:- chr22:38615298-38669016:- chr22:38626675:- DMC1 ENSG00000100206.11 protein_coding - - chr22:38518948-38570204:- chr22:38538612:- chr22:38914953-38966209:- chr22:38934617:- chr22:38227445,chr22:38227448 chr22:38538790,chr22:38538790 NA NA chr22:38623451,chr22:38623454 chr22:38934795,chr22:38934795 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Solute_trans_a|47-319|1.1e-102 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.25Mb] 28 24 28 24 ONLY_REF_SPLICE YES_LDAS 0.5663 GT 1.9656 AG 1.9086 ENST00000361684.8 1-525 ENST00000216024.7 587-1023 chr22|-|[2]38230669-38230744[2]|[1]38231244-38231334[1]|[0]38245935-38246100[0]|[2]38247770-38247961[0]<==>chr22|-|[2]38520020-38520089[2]|[1]38521608-38521724[2]|[1]38537592-38537652[1]|[0]38538295-38538409[0]|[2]38538539-38538612[1] atgacagtgaggggggatgtgctggccccggatccagcgtcgcccacgaccgcagcagcctcgcccagcgtctccgtgatccccgagggcagccccactgccatggagcagcctgtgttcctgatgacaactgccgctcaggccatctctggcttcttcgtgtggacggccctgctcatcacatgccaccagatctacatgcacctgcgctgctacagctgccccaacgagcagcgctacatcgtgcgcatcctcttcatcgtgcccatctacgcctttgactcctggctcagcctcctcttcttcaccaacgaccagtactacgtgtacttcggcaccgtccgcgactgctatgaggccttggtcatctataatttcctgagcctgtgctatgagtacctaggaggagaaagttccatcatgtcggagatcagaggaaaacccattgagtccagctgtatgtatggcacctgctgcctctggggaaagacttattccatcggatttctgaggttctgcaaacagGTGAACATCAGATGGAGCTACTTGATTATGTAGCAGCAAAGTTCCATGAAGAAGCTGGCATCTTCAAGCTATTGATTATCGATTCAATAATGGCACTTTTTCGAGTGGATTTCAGTGGCCGTGGGGAGTTGGCCGAACGGCAGCAAAAATTGGCCCAGATGTTGTCACGACTCCAAAAAATCTCAGAAGAATATAACGTGGCTGTTTTTGTGACCAATCAAATGACTGCCGATCCAGGAGCAACTATGACCTTTCAGGCAGATCCCAAAAAACCCATTGGGGGACACATTCTGGCTCATGCTTCAACAACAAGAATAAGCTTGCGAAAGGGAAGAGGAGAGCTCAGAATTGCCAAGATTTATGACAGTCCTGAGATGCCTGAAAATGAAGCCACCTTCGCAATAACTGCTGGAGGAATTGGGGATGCCAAGGAGTAG MTVRGDVLAPDPASPTTAAASPSVSVIPEGSPTAMEQPVFLMTTAAQAISGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQYYVYFGTVRDCYEALVIYNFLSLCYEYLGGESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGFLRFCKQVNIRWSYLIM*QQSSMKKLASSSY*LSIQ*WHFFEWISVAVGSWPNGSKNWPRCCHDSKKSQKNITWLFL*PIK*LPIQEQL*PFRQIPKNPLGDTFWLMLQQQE*ACEREEESSELPRFMTVLRCLKMKPPSQ*LLEELGMPRS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33541 SNRNP35::KMT5A ENSG00000184209.15::ENSG00000183955.14 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2444 FALSE NA FALSE NA SNRNP35 ENSG00000184209.15 protein_coding + + chr12:123458088-123473154:+ chr12:123458216:+ chr12:123942635-123957701:+ chr12:123942763:+ KMT5A ENSG00000183955.14 protein_coding + + chr12:123384132-123409353:+ chr12:123390630:+ chr12:123868679-123893900:+ chr12:123875177:+ chr12:123461688,chr12:123461685,chr12:123461684 chr12:123383993,chr12:123383991,chr12:123383991 NA NA chr12:123946235,chr12:123946232,chr12:123946231 chr12:123868540,chr12:123868538,chr12:123868538 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"] 21 0 21 0 ONLY_REF_SPLICE YES_LDAS 0.2287 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33542 PRKCE::TTC7A ENSG00000171132.14::ENSG00000068724.18 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2438 FALSE NA FALSE NA PRKCE ENSG00000171132.14 protein_coding + + chr2:45651345-46187990:+ chr2:45652448:+ chr2:45878484-46415129:+ chr2:45879587:+ TTC7A ENSG00000068724.18 protein_coding + + chr2:46915869-47076137:+ chr2:47005922:+ chr2:47143008-47303276:+ chr2:47233061:+ chr2:45806229,chr2:45806230 chr2:47000395,chr2:47000393 NA NA chr2:46033368,chr2:46033369 chr2:47227534,chr2:47227532 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame C2|7-116|6.3e-18^PKC_C2|38-123|5.1e-10 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.73Mb] 19 30 19 29.38 ONLY_REF_SPLICE YES_LDAS 0.5268 GT 1.9656 AG 1.9656 ENST00000421201.1 1-348 ENST00000394850.6 1066-2649 chr2|+|[0]45652101-45652448[2]<==>chr2|+|[0]47005922-47006059[2]|[0]47006641-47006724[2]|[0]47011331-47011435[2]|[0]47021862-47021979[0]|[1]47023408-47023465[1]|[2]47024287-47024359[2]|[0]47029224-47029384[1]|[2]47046315-47046431[1]|[2]47047266-47047337[1]|[2]47049949-47050046[0]|[1]47051746-47051880[0]|[1]47060769-47060971[2]|[0]47073702-47073923[2] atggtagtgttcaatggccttcttaagatcaaaatctgcgaggccgtgagcttgaagcccacagcctggtcgctgcgccatgcggtgggaccccggccgcagactttccttctcgacccctacattgccctcaatgtggacgactcgcgcatcggccaaacggccaccaagcagaagaccaacagcccggcctggcacgacgagttcgtcaccgatgtgtgcaacggacgcaagatcgagctggctgtctttcacgatgcccccataggctacgacgacttcgtggccaactgcaccatccagtttgaggagctgctgcagaacgggagccgccacttcgaggactggGCAACTCGAGATGTGGTGCTGAGCCGGGTGCCGGAGCAGGAGGAGGACCGGACAGTGAGCTTGCAGAATGCCGCAGCCATCTATGACCTCCTGAGCATCACGTTGGGCAGAAGGGGACAGTACGTCATGCTCTCGGAGTGCCTGGAGCGAGCCATGAAGTTTGCGTTTGGAGAATTTCACCTTTGGTACCAGGTGGCCCTCTCCATGGTGGCTTGTGGGAAGTCAGCCTACGCTGTGTCCCTGCTGCGGGAGTGTGTGAAGTTGCGGCCCTCGGACCCCACCGTGCCCCTGATGGCCGCGAAGGTCTGCATCGGGTCCCTTCGCTGGCTAGAGGAAGCAGAGCACTTTGCCATGATGGTGATCAGCCTCGGAGAGGAAGCCGGGGAGTTCCTCCCCAAGGGCTACCTGGCTCTGGGTCTCACCTATAGCCTGCAGGCCACCGACGCCACCCTGAAGTCCAAGCAAGATGAATTGCACCGGAAGGCACTGCAGACGCTGGAGAGGGCTCAGCAGCTGGCGCCCAGTGACCCCCAGGTCATCCTCTATGTCTCGCTGCAGCTGGCCCTCGTCCGACAGATCTCCAGTGCCATGGAGCAGCTGCAGGAGGCCCTGAAGGTACGCAAGGATGATGCCCACGCCCTCCACCTGCTGGCACTGCTCTTCTCTGCCCAGAAGCACCACCAGCATGCCCTGGATGTTGTCAACATGGCCATCACCGAGCACCCTGAGAACTTCAACCTGATGTTCACCAAGGTGAAGCTGGAGCAGGTGCTGAAAGGCCCAGAGGAAGCCCTCGTGACCTGCAGACAAGTGCTGAGGCTGTGGCAGACCCTGTACAGCTTCTCCCAGCTGGGAGACTTTAGGAGCCCAGAAGGCTTCCAGACTCCCCAGAGGAACATCTGTAACAGTGAAATTTACAGAGGAGGAGGCCTAGAAAAGGATGGCAGCTTCGGTGAGGGCCTCACCATGAAGAAGCAGAGTGGCATGCACCTGACTTTGCCTGATGCCCATGATGCAGACTCTGGCTCCCGGCGGGCTTCGTCCATCGCCGCCTCCCGGCTGGAGGAGGCCATGTCAGAGCTGACTATGCCCTCTTCGGTCCTGAAGCAGGGCCCCATGCAGCTGTGGACCACGCTGGAACAGATCTGGCTGCAGGCTGCTGAGCTGTTCATGGAGCAGCAGCACCTCAAGGAAGCAGGTTTCTGCATCCAGGAGGCGGCGGGCCTCTTCCCCACTTCTCACTCAGTACTCTATATGCGGGGCCGGCTGGCTGAGGTGAAGGGCAACCTGGAGGAGGCCAAGCAGCTGTACAAGGAGGCGCTCACGGTGAACCCAGATGGCGTGCGCATCATGCATAGCCTGGGTCTGATGCTGAGTCGGCTGGGCCACAAGAGCTTGGCCCAGAAGGTGCTTCGTGATGCCGTGGAGAGGCAGAGTACGTGCCACGAGGCGTGGCAGGGCCTGGGCGAGGTGCTGCAGGCCCAGGGCCAGAACGAGGCTGCCGTTGACTGCTTCCTCACCGCCCTTGAGCTGGAGGCCAGCAGCCCTGTACTGCCCTTCTCCATCATCCCCAGAGAGCTCTGA MVVFNGLLKIKICEAVSLKPTAWSLRHAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWATRDVVLSRVPEQEEDRTVSLQNAAAIYDLLSITLGRRGQYVMLSECLERAMKFAFGEFHLWYQVALSMVACGKSAYAVSLLRECVKLRPSDPTVPLMAAKVCIGSLRWLEEAEHFAMMVISLGEEAGEFLPKGYLALGLTYSLQATDATLKSKQDELHRKALQTLERAQQLAPSDPQVILYVSLQLALVRQISSAMEQLQEALKVRKDDAHALHLLALLFSAQKHHQHALDVVNMAITEHPENFNLMFTKVKLEQVLKGPEEALVTCRQVLRLWQTLYSFSQLGDFRSPEGFQTPQRNICNSEIYRGGGLEKDGSFGEGLTMKKQSGMHLTLPDAHDADSGSRRASSIAASRLEEAMSELTMPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRLGHKSLAQKVLRDAVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPFSIIPREL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE TRUE Protein kinase C epsilon type AGC PKC PKCh Q02156 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33543 IMMP2L::DOCK4 ENSG00000184903.10::ENSG00000128512.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2442 FALSE NA FALSE NA IMMP2L ENSG00000184903.10 protein_coding - - chr7:110662644-111562517:- chr7:111561851:- chr7:110302700-111202573:- chr7:111201907:- DOCK4 ENSG00000128512.24 protein_coding - - chr7:111726110-112206407:- chr7:111778369:- chr7:111366166-111846462:- chr7:111418425:- chr7:111526873,chr7:111526882 chr7:111780749,chr7:111780755 NA NA chr7:111166929,chr7:111166938 chr7:111420805,chr7:111420811 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DEEPEST2019","ChimerPub","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.16Mb] 16 4 16 3.32 ONLY_REF_SPLICE YES_LDAS 0.2104 GT 1.2729 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Oesophagus no_match TRUE Stomach adenocarcinoma,Esophageal carcinoma,Prostate adenocarcinoma STOMACH,OESOPHAGUS,PROSTATE no_match 111201907,111127294,111161369 TRUE,FALSE,FALSE 111644186,111452005,111409733 FALSE,FALSE,FALSE YES,YES,YES 5UTR-CDS,In-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33545 CHMP2B::MAGI1 ENSG00000083937.10::ENSG00000151276.24 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2440 FALSE NA FALSE NA CHMP2B ENSG00000083937.10 protein_coding + + chr3:87227271-87255556:+ chr3:87240790:+ chr3:87276421-87304706:+ chr3:87289940:+ MAGI1 ENSG00000151276.24 protein_coding - - chr3:65353525-66038918:- chr3:65493631:- chr3:65339200-66024593:- chr3:65479306:- chr3:87241700,chr3:87241697 chr3:65598784,chr3:65598791 NA NA chr3:87290850,chr3:87290847 chr3:65584459,chr3:65584466 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Snf7-PARTIAL|32-174~|4.2e-51^DnaJ-X|53-65|0.21^DUF3456|72-165|7.6e-06^DnaJ-X-PARTIAL|87-174~|5.9e-08 PDZ|476-541|6.6e-12^PDZ_2|497-555|3.8e-05^DUF6288|497-525|0.0055^PDZ_6|498-554|1.5e-08^Tricorn_PDZ|513-527|1.4^PDZ|644-720|3.7e-12^PDZ_2|653-723|8.7e-07^PDZ_6|679-721|6.3e-08^Tricorn_PDZ|679-722|0.0039^MAGI_u5|728-812|1.4e-34^PDZ|819-893|1.3e-13^PDZ_2|837-896|6.3e-06^PDZ_6|842-895|1.6e-08^DUF6288|851-895|0.48^Tricorn_PDZ|854-896|0.079^Serglycin|899-969|5.1e-05^PDZ|971-1061|5.8e-18^DUF6288|1008-1055|4.6e-07^PDZ_6|1011-1060|9e-14^PDZ_2|1011-1072|6.6e-09^Tricorn_PDZ|1023-1066|8.6e-05^PDZ|1124-1199|1.4e-16^PDZ_2|1142-1205|9.4e-07^DUF6288|1148-1184|0.00088^PDZ_6|1151-1203|5.3e-13^Tricorn_PDZ|1163-1206|0.00065^MAGI_u5|1250-1291|8 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:21.19Mb] 14 10 14 10 ONLY_REF_SPLICE YES_LDAS 0.2614 GT 1.6729 AG 1.7968 ENST00000472024.3 1-174 ENST00000402939.7 431-4389 chr3|+|[0]87240372-87240453[0]|[1]87240699-87240790[2]<==>chr3|-|[2]65356378-65357132[1]|[0]65361199-65361337[0]|[2]65363465-65363608[0]|[2]65364665-65364725[2]|[1]65364853-65364946[1]|[0]65375745-65375945[1]|[0]65379261-65379554[1]|[0]65381877-65382069[0]|[2]65383532-65383623[1]|[0]65391142-65391358[0]|[2]65401439-65401470[1]|[0]65429520-65430140[1]|[0]65430699-65430881[1]|[0]65437155-65437247[1]|[0]65439879-65440012[2]|[1]65442792-65442849[1]|[0]65448022-65448057[1]|[0]65453258-65453340[2]|[1]65470283-65470484[1]|[0]65478592-65478798[1]|[0]65493512-65493631[1] atgatctcggctcaacgcaaccatcacctcccagattcaagcgattcttctacctcagcctaccgagtagctcggattacagatgtaataaaggaacagaatcgagagttacgaggtacacagagggctataatcagagatcgagcagctttagagaaacaagaaaaacagctgGCACAACCCGATCTCCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTGTGAAGGAGTTCTTGGACCTCGAGCAGAGTGGGACTCTTCTGGAAGTCGGCACCTATGAAGGAAACTATTATGGGACACCCAAGCCTCCTAGCCAGCCAGTCAGTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTTCAGTCTGGCTCTAAGCAGTCGACCCCGAAGCGAACCAAGTCCTACAATGATATGCAAAATGCTGGCATAGTCCACGCGGAGAATGAGGAGGAGGATGACGTTCCTGAAATGAACAGCAGCTTTACAGCCGATTCTGGTGAACAAGAGGAGCACACTCTCCAAGAAACAGCATTACCACCTGTGAATAGTAGCATCATCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAATACCTACCTCTTTCTGCAGAGGATAATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTTATAGACCATAACACGAAAACAACATCTTGGTTAGACCCTCGGTGCCTAAACAAGCAGCAGAAGCCACTGGAAGAGTGTGAAGATGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAACTGCCTGCTGGTTGGGAAAAGATTGAAGACCCTGTCTATGGTATCTACTATGTAGACCACATCAACAGGAAGACACAATATGAGAACCCGGTTCTAGAAGCCAAACGGAAGAAGCAGCTTGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGACAGAAGAATGGACAGAAGATCACTCAGCCCTTGTGCCTCCTGTTATTCCAAACCACCCTCCAAGCAATCCAGAGCCAGCCAGAGAAGTTCCACTTCAGGGCAAACCCTTTTTTACACGAAACCCTTCTGAGTTGAAAGGCAAGTTCATTCACACAAAGCTGCGGAAAAGCAGTCGTGGCTTTGGCTTCACGGTGGTTGGAGGGGATGAACCTGATGAGTTTCTCCAGATCAAGAGCTTGGTCCTAGATGGTCCTGCTGCATTGGATGGCAAGATGGAAACAGGGGATGTGATTGTAAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAGATCTTCCAGTCCATCCCCATTGGTGCCAGCGTGGACCTTGAACTCTGCCGAGGTTATCCATTGCCTTTTGATCCAGATGACCCCAATACAAGTTTAGTGACCTCGGTAGCCATTTTGGATAAAGAACCAATTATTGTGAATGGGCAAGAGACCTATGATTCACCAGCTAGCCACAGTAGTAAAACAGGCAAAGTCAATGGCATGAAGGATGCCAGGCCAAGCAGCCCAGCGGACGTGGCTTCAAATAGTTCTCATGGTTATCCTAATGACACTGTTTCTTTGGCTTCCTCCATAGCCACTCAGCCAGAACTCATAACTGTTCATATTGTCAAAGGGCCAATGGGCTTTGGTTTTACTATCGCAGACAGTCCTGGTGGGGGTGGCCAAAGAGTGAAACAGATTGTTGACAGCCCAAGGTGCCGAGGCCTGAAAGAAGGGGATCTCATAGTGGAAGTTAATAAGAAGAACGTGCAGGCCCTAACTCACAACCAAGTGGTGGATATGCTGGTTGAGTGTCCTAAGGGAAGTGAGGTCACATTGTTGGTGCAACGAGGAGGGCTGCCAGTTCCCAAGAAGAGCCCAAAGTCGCAACCACTGGAAAGGAAAGACAGCCAGAATAGTTCTCAGCACAGTGTTTCCAGCCACCGAAGCCTGCACACAGCATCCCCAAGCCACAGCACACAGGTGCTCCCCGAGTTCCCACCTGCAGAGGCCCAAGCTCCAGATCAAACTGACAGCTCTGGCCAGAAAAAACCAGATCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGTATGAAAACCGACTTCCAGATTACCAGGAACAGGACATCTTCCTCTGGAGAAAAGAGACTGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACCTATTTATATTGGTCACATCGTACCACTGGGTGCTGCTGATACTGACGGCCGCCTGAGGTCTGGAGATGAATTAATCTGTGTGGATGGGACGCCAGTAATTGGAAAATCACACCAGCTTGTGGTCCAGCTTATGCAACAAGCTGCCAAGCAAGGCCACGTCAATCTCACGGTGCGGCGTAAAGTGGTTTTTGCGGTGCCCAAAACCGAGAACGAGGTGCCCTCGCCAGCCTCCTCTCATCACAGTAGCAACCAGCCGGCCTCGCTGACAGAAGAGAAGCGCACTCCGCAGGGCAGCCAGAACTCGCTGAACACGGTGAGCTCGGGCAGCGGCAGCACCAGCGGCATCGGCAGTGGCGGCGGCGGGGGCAGCGGCGTGGTCAGCACCGTGGTGCAGCCCTACGACGTGGAGATCCGGCGCGGGGAGAACGAGGGCTTCGGCTTCGTCATCGTGTCCTCGGTGAGCAGGCCCGAAGCAGGCACGACCTTTGGCAATGCATGTGTGGCTATGCCTCACAAAATAGGTCGGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTAAATGGATGTTCCATCACCAACAAATCCCATTCAGACATTGTGAACCTAATCAAGGAAGCGGGAAACACAGTTACCCTCCGCATCATTCCTGGGGATGAGTCCTCGAATGCCACCTTGCTGACCAATGCAGAGAAGATTGCCACCATCACCACCACACACACCCCTTCTCAGCAAGGGACCCAGGAGACAAGGAATACCACCAAACCAAAGCAGGAATCTCAATTTGAGTTCAAAGCACCCCAAGCAACACAGGAGCAAGATTTTTACACTGTGGAACTGGAAAGAGGAGCCAAGGGATTTGGCTTTAGCCTTCGAGGAGGCCGAGAGTATAACATGGACCTCTATGTTCTGCGCTTAGCAGAGGACGGTCCTGCGGAGAGGTGTGGAAAGATGAGGATTGGTGATGAAATTTTAGAGATCAATGGTGAGACCACCAAAAACATGAAGCATTCTCGAGCTATAGAACTGATTAAGAATGGTGGCCGCAGAGTTCGTCTGTTTCTGAAGCGGGGAGACGGCTCAGTACCAGAATATGACCCCAGCAGCGACCGCCACGGCCCCGCCACCGGTCCACAAGGTGTTCCGGAAGTGAGGGCCGGGCCCGACCGCCGGCAGCATCCGTCATTGGAGTCCAGTTACCCACCCGATCTTCACAAATCATCACCACATGGGGAAAAGCGGGCACACGCAAGGGATCCGAAAGGCAGCAGAGAGTATAGCAGACAACCCAATGAACACCACACCTGGAATGGGACTTCGAGGAAACCCGACAGCGGGGCATGCCGACCCAAGGACCGGGCGCCGGAGGGACGGAGGGACGCGCAGGCCGAGCGCGCGGCAGCCGCCAACGGCCCCAAGAGGCGGTCCCCAGAGAAGCGGAGGGAGGGCACCCGCAGCGCCGACAACACTTTGGAGAGGAGGGAGAAGCACGAGAAGAGACGAGACGTCTCTCCGGAGCGGAGGCGAGAGCGGTCACCCACCCGCAGGAGAGACGGCTCCCCCAGCCGGCGGAGACGGTCTCTGGAGAGACTCCTGGAGCAGAGGAGGTCCCCCGAGCGCAGGAGAGGGGGCTCGCCCGAGCGCAGGGCCAAGTCCACCGACCGGAGGCGCGCACGCTCCCCCGAGCGCAGGAGAGAGCGGTCCCTGGACAAAAGGAACAGAGAGGACAGAGCCAGCCACCGAGAAAGGGAAGAGGCGAATCTGAAACAGGATGCCGGCAGAAGTTCCAGACATCCCCCGGAGCAGAGAAGGCGACCTTACAAAGAATGTAGCACCGACCTCAGTATCTGA MISAQRNHHLPDSSDSSTSAYRVARITDVIKEQNRELRGTQRAIIRDRAALEKQEKQLAQPDLPEKEKCLAWTITF*L*RSSWTSSRVGLFWKSAPMKETIMGHPSLLASQSVGK*SRRMPCTAFSLALSSRPRSEPSPTMICKMLA*STRRMRRRMTFLK*TAALQPILVNKRSTLSKKQHYHL*IVASSLLPSRTLLRSSLNTYLFLQRII*VLYLKTGRWPILKMEKSIL*TITRKQHLG*TLGA*TSSRSHWKSVKMMKGYTPRSWTVN*NCLLVGKRLKTLSMVSTM*TTSTGRHNMRTRF*KPNGRSSLSSSSSSNSSSNSSSSSSSSSRQKNGQKITQPLCLLLFQTTLQAIQSQPEKFHFRANPFLHETLLS*KASSFTQSCGKAVVALASRWLEGMNLMSFSRSRAWS*MVLLHWMARWKQGM*L*V*MTPVFWDTHMLKL*RSSSPSPLVPAWTLNSAEVIHCLLIQMTPIQV**PR*PFWIKNQLL*MGKRPMIHQLATVVKQAKSMA*RMPGQAAQRTWLQIVLMVILMTLFLWLPP*PLSQNS*LFILSKGQWALVLLSQTVLVGVAKE*NRLLTAQGAEA*KKGIS*WKLIRRTCRP*LTTKWWICWLSVLREVRSHCWCNEEGCQFPRRAQSRNHWKGKTARIVLSTVFPATEACTQHPQATAHRCSPSSHLQRPKLQIKLTALARKNQILLKSGPSPGACMKTDFQITRNRTSSSGEKRLDLDLGFWVEMNQGNLFILVTSYHWVLLILTAA*GLEMN*SVWMGRQ*LENHTSLWSSLCNKLPSKATSISRCGVKWFLRCPKPRTRCPRQPPLITVATSRPR*QKRSALRRAARTR*TR*ARAAAAPAASAVAAAGAAAWSAPWCSPTTWRSGAGRTRASASSSCPR*AGPKQARPLAMHVWLCLTK*VGLLRGALLTAVAS*K*ETGSWQ*MDVPSPTNPIQTL*T*SRKRETQLPSASFLGMSPRMPPC*PMQRRLPPSPPHTPLLSKGPRRQGIPPNQSRNLNLSSKHPKQHRSKIFTLWNWKEEPRDLALAFEEAESITWTSMFCA*QRTVLRRGVER*GLVMKF*RSMVRPPKT*SILEL*N*LRMVAAEFVCF*SGETAQYQNMTPAATATAPPPVHKVFRK*GPGPTAGSIRHWSPVTHPIFTNHHHMGKSGHTQGIRKAAESIADNPMNTTPGMGLRGNPTAGHADPRTGRRRDGGTRRPSARQPPTAPRGGPQRSGGRAPAAPTTLWRGGRSTRRDETSLRSGGESGHPPAGETAPPAGGDGLWRDSWSRGGPPSAGEGARPSAGPSPPTGGAHAPPSAGESGPWTKGTERTEPATEKGKRRI*NRMPAEVPDIPRSREGDLTKNVAPTSVS FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33546 MAGI1::CHMP2B ENSG00000151276.24::ENSG00000083937.10 HCC15 SRR8616176 SRR8639164 LUNG carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2441 FALSE NA FALSE NA MAGI1 ENSG00000151276.24 protein_coding - - chr3:65353525-66038918:- chr3:65621972:- chr3:65339200-66024593:- chr3:65607647:- CHMP2B ENSG00000083937.10 protein_coding + + chr3:87227271-87255556:+ chr3:87245714:+ chr3:87276421-87304706:+ chr3:87294864:+ chr3:65598867,chr3:65598869 chr3:87241880,chr3:87241878 NA NA chr3:65584542,chr3:65584544 chr3:87291030,chr3:87291028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PDZ|19-100|0.004^Tricorn_PDZ|63-79|2.5^PDZ_6|67-82|5.2^Guanylate_kin|139-190|7e-14^MAGI_u1|202-261|5.1e-37^WW|302-331|1.3e-13^WW|361-390|1.2e-10^HerA_C|369-422|0.00079^Guanylate_kin|398-423|5.8 Snf7-PARTIAL|~4-144|4.8e-44^DUF3456|15-124|4.3e-06^DnaJ-X|30-140|3.5e-09^Baculo_gp41|38-121|5.7e-05^Snf7|157-169|1.5 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:21.19Mb] 7 8 7 8 ONLY_REF_SPLICE YES_LDAS 0.1633 GT 1.8256 AG 1.4566 ENST00000483466.5 1-430 ENST00000471660.5 4-519 chr3|-|[0]65621972-65622088[1]|[0]66037996-66038308[0]<==>chr3|+|[0]87245714-87245908[2]|[0]87249875-87249977[0]|[1]87253404-87253510[2]|[0]87253712-87253822[2] atgtccaaagtgatccagaagaagaaccactggactagcagggttcacgaatgcaccgtgaagcggggaccccagggcgagctgggggtgacggtgctgggaggcgcggagcacggggagtttccgtacgtcggagcggtggcggcggtcgaggcagcggggcttcccggcggcggcgagggcccgaggctgggcgaaggggagctgcttctggaggtgcagggggtccgggtgtccggcttgccccgctatgacgtgctgggggtcatcgacagctgcaaggaggccgtcaccttcaaggccgtcagacaaggaggaaggctgaacaaggacctgcgacattttctcaatcagcgattccagaaggggtctcctgatcatgagctccagcagaccataagggataacctttaccgccatgctgtgccttGAATTAGAAATTAAGAAAATGGCCAAGATTGGTAATAAGGAAGCTTGCAAAGTTTTAGCCAAACAACTTGTGCATCTACGGAAACAGAAGACGAGAACTTTTGCTGTAAGTTCAAAAGTTACTTCTATGTCTACACAAACAAAAGTGATGAATTCCCAAATGAAGATGGCTGGAGCAATGTCTACTACAGCAAAAACAATGCAGGCAGTTAACAAGAAGATGGATCCACAAAAGACATTACAAACAATGCAGAATTTCCAGAAGGAAAACATGAAAATGGAAATGACTGAAGAAATGATCAATGATACACTTGATGACATCTTTGACGGTTCTGATGACGAAGAAGAAAGCCAGGATATTGTGAATCAAGTTCTTGATGAAATTGGAATTGAAATTTCTGGAAAGATGGCCAAAGCTCCATCAGCTGCTCGAAGCTTACCATCTGCCTCTACTTCAAAGGCTACAATCTCAGATGAAGAGATTGAACGGCAACTCAAGGCTTTAGGAGTAGATTAG MSKVIQKKNHWTSRVHECTVKRGPQGELGVTVLGGAEHGEFPYVGAVAAVEAAGLPGGGEGPRLGEGELLLEVQGVRVSGLPRYDVLGVIDSCKEAVTFKAVRQGGRLNKDLRHFLNQRFQKGSPDHELQQTIRDNLYRHAVP*IRN*ENGQDW**GSLQSFSQTTCASTETEDENFCCKFKSYFYVYTNKSDEFPNEDGWSNVYYSKNNAGS*QEDGSTKDITNNAEFPEGKHENGND*RNDQ*YT**HL*RF**RRRKPGYCESSS**NWN*NFWKDGQSSISCSKLTICLYFKGYNLR*RD*TATQGFRSRL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33549 TAOK2::ABCA4 ENSG00000149930.18::ENSG00000198691.14 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 2445 FALSE NA FALSE NA TAOK2 ENSG00000149930.18 protein_coding + + chr16:29973868-29992261:+ chr16:29974648:+ chr16:29985189-30003582:+ chr16:29985969:+ ABCA4 ENSG00000198691.14 protein_coding - - chr1:93992834-94121148:- chr1:94011385:- chr1:94458390-94586704:- chr1:94476941:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr1] 96 48 96 48 ONLY_REF_SPLICE YES_LDAS 1.6509 GT 1.8892 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FRAME_UNKNOWN Serine/threonine-protein kinase TAO2 STE STE20 TAO Q9UL54 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33550 RABEP2::KCNB2 ENSG00000177548.13::ENSG00000182674.6 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2449 FALSE NA FALSE NA RABEP2 ENSG00000177548.13 protein_coding - - chr16:28904421-28936526:- chr16:28924403:- chr16:28915742-28947847:- chr16:28935724:- KCNB2 ENSG00000182674.6 protein_coding + + chr8:72537225-72938349:+ chr8:72935935:+ chr8:73449460-73850584:+ chr8:73848170:+ chr16:28922397,chr16:28922535 chr8:72804723,chr8:72804720 NA NA chr16:28933718,chr16:28933856 chr8:73716958,chr8:73716955 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Rabaptin|24-181|1.8e-41^TruB_C_2|39-66|0.63^Fib_alpha|54-117|3.2e-05^Rab5-bind|58-169|0.07^TruB_C_2|132-161|0.00011^Fib_alpha|137-181|0.0082^Rabaptin|221-269|0.00032 Kv2channel-PARTIAL|~580-759|4.2e-156 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr16--chr8] 34 14 34 14 ONLY_REF_SPLICE YES_LDAS 0.5503 GT 1.9329 AG 1.9329 ENST00000357573.10 1-274 ENST00000523207.2 580-2736 chr16|-|[0]28924403-28924615[1]|[0]28925103-28925163[0]<==>chr8|+|[0]72935935-72938091[2] atggcggcagctgcgccggtggccgcggacgacgatgagcggcggcggcggccgggggctgcactggaggactcccggtcccaggaaggggcaaatggtgaggccgagtcaggtgagctcagccggcttcgggctgagctggcaggcgccctggcagaaatggaaaccatgaaggctgtggcagaggtgagcgagagcacgaaggccgaggctgtggctgcggtgcagcggcagtgccaagaggaggtggcctcgctgcaggccatcctgaaagATCCTGGCCATCGTGTCTATCCTGTTCATTGTGCTTTCCACCATTGCTTTGTCTCTCAATACGCTGCCGGAGCTGCAGGAAACGGACGAATTTGGACAACTCAATGACAACCGCCAATTAGCACACGTGGAGGCTGTGTGTATTGCATGGTTTACCATGGAGTACCTTTTGCGATTCTTATCCTCACCAAATAAATGGAAGTTCTTCAAAGGCCCACTGAATGTCATTGATTTGCTGGCCATCTTGCCGTACTATGTCACCATTTTTCTGACGGAGTCCAACAAGAGCGTGCTGCAGTTCCAAAACGTGAGGCGCGTGGTCCAGATCTTCCGAATCATGCGCATCCTCAGGATCCTGAAACTCGCCAGGCATTCGACAGGCCTGCAGTCTCTGGGTTTCACCCTTAGGCGGAGTTACAATGAATTGGGCTTGTTGATATTGTTTCTGGCCATGGGGATAATGATATTTTCCAGCCTGGTATTTTTTGCTGAGAAGGATGAAGATGCTACCAAGTTCACCAGTATCCCTGCATCATTTTGGTGGGCCACCATCACCATGACCACTGTTGGCTATGGTGACATTTACCCTAAAACATTACTAGGGAAAATTGTGGGAGGTCTGTGCTGTATTGCTGGGGTTCTGGTTATTGCCCTTCCTATCCCAATTATTGTGAACAATTTTTCTGAGTTTTACAAGGAGCAGAAACGCCAAGAGAAAGCAATTAAAAGGAGGGAGGCTCTTGAGCGGGCCAAAAGGAACGGAAGCATCGTTTCTATGAACTTAAAAGATGCCTTCGCTCGAAGTATGGAACTGATAGATGTGGCTGTTGAGAAGGCCGGAGAGTCCGCCAACACAAAGGACTCCGCCGACGATAATCACCTGTCGCCAAGCCGGTGGAAGTGGGCCAGGAAGGCTCTGTCGGAAACAAGCTCCAACAAGTCTTTCGAGAATAAGTACCAGGAGGTTAGCCAAAAAGACTCCCACGAGCAGCTGAACAACACGTCTTCCTCCAGCCCACAGCATCTGAGTGCCCAGAAACTGGAGATGCTATACAATGAAATCACCAAGACACAGCCTCATTCTCACCCAAACCCAGACTGCCAAGAAAAGCCTGAGAGGCCATCTGCATATGAAGAAGAGATTGAAATGGAAGAAGTGGTGTGTCCACAGGAGCAGCTGGCCGTGGCACAGACCGAGGTCATTGTGGACATGAAGAGCACCTCCAGCATCGACAGCTTCACCAGCTGTGCCACCGACTTCACAGAGACAGAGAGATCGCCGCTGCCGCCGCCCTCCGCCTCTCACTTGCAGATGAAGTTCCCAACCGACCTCCCAGGGACAGAAGAGCACCAAAGAGCTAGGGGCCCCCCGTTTCTAACTCTATCCAGAGAGAAAGGACCTGCTGCCAGGGATGGCACGCTGGAGTATGCCCCAGTTGACATAACTGTGAACCTCGATGCCAGTGGCTCCCAGTGTGGGCTACATAGTCCTTTGCAGTCTGACAATGCCACCGACAGTCCTAAGAGCTCTCTAAAAGGCAGCAACCCACTAAAGTCCAGATCCCTCAAAGTGAACTTTAAGGAAAATAGAGGCAGTGCACCACAGACCCCGCCCAGCACAGCCAGGCCACTGCCAGTCACCACAGCTGACTTTTCGCTCACTACCCCGCAGCACATCAGTACCATCCTCTTAGAAGAAACCCCCTCCCAGGGAGACAGACCCTTGCTGGGCACTGAGGTTTCAGCGCCTTGTCAGGGACCTTCCAAAGGGCTGTCCCCCAGGTTTCCCAAGCAGAAACTGTTCCCTTTCTCTTCAAGAGAGAGGAGGAGCTTCACTGAAATAGATACTGGTGACGACGAAGACTTCTTAGAGCTCCCAGGGGCAAGGGAGGAGAAGCAGGTGGACTCCAGCCCAAATTGCTTTGCAGATAAGCCTAGTGATGGGAGAGACCCTTTAAGAGAAGAGGGCAGTGTGGGCTCTTCCTCCCCGCAGGACACAGGTCACAACTGTAGGCAAGACATTTACCATGCTGTGAGTGAAGTCAAAAAGGACAGTAGTCAAGAAGGGTGCAAGATGGAAAATCACTTGTTTGCCCCAGAAATTCATTCCAACCCAGGAGACACAGGTTATTGTCCCACACGTGAAACCAGCATGTGA MAAAAPVAADDDERRRRPGAALEDSRSQEGANGEAESGELSRLRAELAGALAEMETMKAVAEVSESTKAEAVAAVQRQCQEEVASLQAILKDPGHRVYPVHCAFHHCFVSQYAAGAAGNGRIWTTQ*QPPISTRGGCVYCMVYHGVPFAILILTK*MEVLQRPTECH*FAGHLAVLCHHFSDGVQQERAAVPKREARGPDLPNHAHPQDPETRQAFDRPAVSGFHP*AELQ*IGLVDIVSGHGDNDIFQPGIFC*EG*RCYQVHQYPCIILVGHHHHDHCWLW*HLP*NITRENCGRSVLYCWGSGYCPSYPNYCEQFF*VLQGAETPRESN*KEGGS*AGQKERKHRFYELKRCLRSKYGTDRCGC*EGRRVRQHKGLRRR*SPVAKPVEVGQEGSVGNKLQQVFRE*VPGG*PKRLPRAAEQHVFLQPTASECPETGDAIQ*NHQDTASFSPKPRLPRKA*EAICI*RRD*NGRSGVSTGAAGRGTDRGHCGHEEHLQHRQLHQLCHRLHRDREIAAAAALRLSLADEVPNRPPRDRRAPKS*GPPVSNSIQRERTCCQGWHAGVCPS*HNCEPRCQWLPVWAT*SFAV*QCHRQS*ELSKRQQPTKVQIPQSEL*GK*RQCTTDPAQHSQATASHHS*LFAHYPAAHQYHPLRRNPLPGRQTLAGH*GFSALSGTFQRAVPQVSQAETVPFLFKREEELH*NRYW*RRRLLRAPRGKGGEAGGLQPKLLCR*A**WERPFKRRGQCGLFLPAGHRSQL*ARHLPCCE*SQKGQ*SRRVQDGKSLVCPRNSFQPRRHRLLSHT*NQHV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33552 ATF6::PBX1 ENSG00000118217.7::ENSG00000185630.20 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 2446 TRUE 4466 TRUE 1695 ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161792327:+ chr1:161736088-161947364:+ chr1:161762117:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164849340:+ chr1:164524821-164868533:+ chr1:164818577:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF5790|40-78|0.0046^bZIP_1|45-60|5.2^FapA|259-369|0.00017^bZIP_Maf|304-369|5.1e-07^DUF5790|304-364|0.01^bZIP_1|307-366|1.8e-14^GAS|307-370|0.0002^bZIP_2|309-358|2.5e-09^YabA|325-367|0.00036^ZapB|334-370|0.00022^Cep57_CLD_2|335-361|5.5e-05^Docking|338-352|0.0006^CCDC138_cc|346-371|2.3e-05^bZIP_Maf|480-502|1.6^YabA|480-500|6.6^Methyltrans_RNA|490-559|6e-05^GAS|491-516|0.88^bZIP_2|496-504|5.7^CCDC138_cc|498-507|8.7 none ["PBX1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:2.59Mb] 20 29 20 20.64 ONLY_REF_SPLICE YES_LDAS 0.4659 GT 1.8323 AG 1.4256 ENST00000367942.4 1-688 ENST00000627490.2 1201-1263 chr1|+|[0]161766361-161766442[0]|[1]161778244-161778320[2]|[0]161781912-161781999[0]|[1]161783990-161784096[2]|[0]161791408-161791537[0]|[1]161792124-161792327[0]<==>chr1|+|[0]164849340-164849402[2] atgggggagccggctggggttgccggcaccatggagtcaccttttagcccgggactctttcacaggctggatgaagattgggattctgctctctttgctgaactcggttatttcacagacactgatgagctgcaattggaagcagcaaatgagacgtatgaaaacaattttgataatcttgattttgatttggatttgatgccttgggagtcagacatttgggacatcaacaaccaaatctgtacagttaaagatattaaggcagaacctcagccactttctccagcctcctcaagttattcagtctcgtctcctcggtcagtggactcttattcttcaactcagcatgttcctgaggagttggatttgtcttctagttctcagatgtctcccctttccttatatggtgaaaactctaatagtctctcttcagcggagccactgaaggaagataagcctgtcactggtcctaggaacaagactgaaaatggactgactccaaagaaaaaaattcaggtgaattcaaaaccttcaattcagcccaagcctttattgcttccagcagcacccaagactcaaacaaactccagtgttccagcaaaaaccatcattattcagacagtaccaacgcttatgccattggcaaagcagcaaccaattatcagtttacaacctgcacccactaaagCACCTCCCCCGGCACCCCCGGCAAGCCCACTATCACTTCCGACTTCCAACGTGGCATCCGTGA MGEPAGVAGTMESPFSPGLFHRLDEDWDSALFAELGYFTDTDELQLEAANETYENNFDNLDFDLDLMPWESDIWDINNQICTVKDIKAEPQPLSPASSSYSVSSPRSVDSYSSTQHVPEELDLSSSSQMSPLSLYGENSNSLSSAEPLKEDKPVTGPRNKTENGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTKAPPPAPPASPLSLPTSNVASV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 33554 ATF6::PBX1 ENSG00000118217.7::ENSG00000185630.20 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE TRUE 2447 TRUE 4466 TRUE 1695 ATF6 ENSG00000118217.7 protein_coding + + chr1:161766298-161977574:+ chr1:161792327:+ chr1:161736088-161947364:+ chr1:161762117:+ PBX1 ENSG00000185630.20 protein_coding + + chr1:164555584-164899296:+ chr1:164884542:+ chr1:164524821-164868533:+ chr1:164853779:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF5790|40-78|0.0046^bZIP_1|45-60|5.2^FapA|259-369|0.00017^bZIP_Maf|304-369|5.1e-07^DUF5790|304-364|0.01^bZIP_1|307-366|1.8e-14^GAS|307-370|0.0002^bZIP_2|309-358|2.5e-09^YabA|325-367|0.00036^ZapB|334-370|0.00022^Cep57_CLD_2|335-361|5.5e-05^Docking|338-352|0.0006^CCDC138_cc|346-371|2.3e-05^bZIP_Maf|480-502|1.6^YabA|480-500|6.6^Methyltrans_RNA|490-559|6e-05^GAS|491-516|0.88^bZIP_2|496-504|5.7^CCDC138_cc|498-507|8.7 none ["PBX1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:2.59Mb] 17 21 17 7.89 ONLY_REF_SPLICE YES_LDAS 0.2854 GT 1.8323 AG 1.8295 ENST00000367942.4 1-688 ENST00000699848.1 759-779 chr1|+|[0]161766361-161766442[0]|[1]161778244-161778320[2]|[0]161781912-161781999[0]|[1]161783990-161784096[2]|[0]161791408-161791537[0]|[1]161792124-161792327[0]<==>chr1|+|[0]164884542-164884562[2] atgggggagccggctggggttgccggcaccatggagtcaccttttagcccgggactctttcacaggctggatgaagattgggattctgctctctttgctgaactcggttatttcacagacactgatgagctgcaattggaagcagcaaatgagacgtatgaaaacaattttgataatcttgattttgatttggatttgatgccttgggagtcagacatttgggacatcaacaaccaaatctgtacagttaaagatattaaggcagaacctcagccactttctccagcctcctcaagttattcagtctcgtctcctcggtcagtggactcttattcttcaactcagcatgttcctgaggagttggatttgtcttctagttctcagatgtctcccctttccttatatggtgaaaactctaatagtctctcttcagcggagccactgaaggaagataagcctgtcactggtcctaggaacaagactgaaaatggactgactccaaagaaaaaaattcaggtgaattcaaaaccttcaattcagcccaagcctttattgcttccagcagcacccaagactcaaacaaactccagtgttccagcaaaaaccatcattattcagacagtaccaacgcttatgccattggcaaagcagcaaccaattatcagtttacaacctgcacccactaaagGAAATTGCAAGAACCTATTGA MGEPAGVAGTMESPFSPGLFHRLDEDWDSALFAELGYFTDTDELQLEAANETYENNFDNLDFDLDLMPWESDIWDINNQICTVKDIKAEPQPLSPASSSYSVSSPRSVDSYSSTQHVPEELDLSSSSQMSPLSLYGENSNSLSSAEPLKEDKPVTGPRNKTENGLTPKKKIQVNSKPSIQPKPLLLPAAPKTQTNSSVPAKTIIIQTVPTLMPLAKQQPIISLQPAPTKGNCKNLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE pre-B-cell leukemia transcription factor 1 1 Yes pre B-ALL, myoepithelioma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation 33556 ENSG00000290792::H4C14 ENSG00000290792.1::ENSG00000270882.3 HCC1833 SRR8616178 SRR8639163 LUNG carcinoma (adenocarcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA ENSG00000290792 ENSG00000290792.1 lncRNA - - chr1:149844498-149850937:- chr1:149850398:- chr1:149816065-149822504:- chr1:149821965:- H4C14 ENSG00000270882.3 protein_coding + + chr1:149832657-149839767:+ chr1:149834135:+ chr1:149804221-149811339:+ chr1:149805701:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 14 21 7 10.5 INCL_NON_REF_SPLICE YES_LDAS 0.2007 GT 1.8892 AG 1.7232 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33564 ENSG00000229964::OPA1 ENSG00000229964.1::ENSG00000198836.11 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2454 FALSE NA FALSE NA ENSG00000229964 ENSG00000229964.1 lncRNA + + chr3:194091561-194109174:+ chr3:194091646:+ chr3:193809350-193826963:+ chr3:193809435:+ OPA1 ENSG00000198836.11 protein_coding + + chr3:193593144-193697811:+ chr3:193692063:+ chr3:193310933-193415600:+ chr3:193409852:+ chr3:194093818,chr3:194093816,chr3:194093813 chr3:193686660,chr3:193686655,chr3:193686655 NA NA chr3:193811607,chr3:193811605,chr3:193811602 chr3:193404449,chr3:193404444,chr3:193404444 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["OPA1:Oncogene"] 329 168 329 168 ONLY_REF_SPLICE YES_LDAS 5.3827 GT 1.7819 AG 1.3383 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33565 PAWR::ENSG00000257894 ENSG00000177425.11::ENSG00000257894.2 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA PAWR ENSG00000177425.11 protein_coding - - chr12:79574979-79690964:- chr12:79689729:- chr12:79968759-80084744:- chr12:80083509:- ENSG00000257894 ENSG00000257894.2 lncRNA - - chr12:79341205-79503396:- chr12:79393925:- chr12:79734985-79897176:- chr12:79787705:- chr12:79670780,chr12:79670785 chr12:79460205,chr12:79460207 NA NA chr12:80064560,chr12:80064565 chr12:79853985,chr12:79853987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PAWR:Oncogene"] 32 13 32 13 ONLY_REF_SPLICE YES_LDAS 0.4874 GT 1.8892 AG 1.6402 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33566 NFIA::EHF ENSG00000162599.18::ENSG00000135373.13 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2455 FALSE NA FALSE NA NFIA ENSG00000162599.18 protein_coding + + chr1:60865259-61462788:+ chr1:61088680:+ chr1:61330931-61928460:+ chr1:61554352:+ EHF ENSG00000135373.13 protein_coding + + chr11:34621093-34663288:+ chr11:34651542:+ chr11:34642640-34684835:+ chr11:34673089:+ chr1:61218648,chr1:61218649 chr11:34649078,chr11:34649076 NA NA chr1:61684320,chr1:61684321 chr11:34670625,chr11:34670623 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame NfI_DNAbd_pre-N|53-91|4.5e-30^Maestro_HEAT|75-141|3.7e-05^MH1|114-215|2.3e-15^CTF_NFI|189-219|0.89^CTF_NFI|259-546|1.3e-119 none ["ChimerKB","Klijn_CellLines","DepMap2023","Cosmic","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr11] 28 11 28 11 ONLY_REF_SPLICE YES_LDAS 0.4224 GT 1.9656 AG 1.9329 ENST00000371189.8 1-694 ENST00000531794.5 473-969 chr1|+|[0]61081944-61082047[1]|[2]61082761-61082818[2]|[0]61088149-61088680[0]<==>chr11|+|[1]34651542-34651610[0]|[1]34651737-34651805[0]|[1]34656908-34656970[0]|[1]34658533-34658728[1]|[2]34658832-34658931[2] atgcaaatgtgccgcccggcctcctcctcggttctctacgtgcccacgcggtggcccggggggtgcggggcaacctggcaaagttgcccaagtcctccaccgagacgcacacgcataccccagcgcccggcagttatgtattctccgctctgtctcacccaggatgaatttcatcctttcatcgaagcacttctgccccacgtccgagcctttgcctacacatggttcaacctgcaggcccgaaaacgaaaatacttcaaaaaacatgaaaagcgtatgtcaaaagaagaagagagagccgtgaaggatgaattgctaagtgaaaaaccagaggtcaagcagaagtgggcatctcgacttctggcaaagttgcggaaagatatccgacccgaatatcgagaggattttgttcttacagttacagggaaaaaacctccatgttgtgttctttccaacccagaccagaaaggcaagatgcgaagaattgactgcctccgccaggcagataaagtctggaggttggaccttgttatggtgattttgtttaaaggtattccgctggaaagtactgatggcgagcgccttgtaaagtccccacaatgctctaatccagggctctgtgtccaaccccatcacataggggtttctgttaaggaactcgatttatatttggcatactttgtgcatgcagcagAGCCTTCCATCATGAACACCTGGAAAGACGAGAACTATTTATATGACACCAACTATGGTAGCACAGTAGATTTGTTGGACAGCAAAACTTTCTGCCGGGCTCAGATCTCCATGACAACCACCAGTCACCTTCCTGTTGCAGAGTCACCTGATATGAAAAAGGAGCAAGACCCCCCTGCCAAGTGCCACACCAAAAAGCACAACCCGAGAGGGACTCACTTATGGGAATTCATCCGCGACATCCTCTTGAACCCAGACAAGAACCCAGGATTAATAAAATGGGAAGACCGATCTGAGGGCGTCTTCAGGTTCTTGAAATCAGAGGCAGTGGCTCAGCTATGGGGTAAAAAGAAGAACAACAGCAGCATGACCTATGAAAAGCTCAGCCGAGCTATGAGATATTACTACAAAAGAGAAATTCTGGAGCGTGTGGATGGACGAAGACTGGTATATAAATTTGGGAAGAATGCCCGAGGATGGAGAGAAAATGAAAACTGA MQMCRPASSSVLYVPTRWPGGCGATWQSCPSPPPRRTRIPQRPAVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAAEPSIMNTWKDENYLYDTNYGSTVDLLDSKTFCRAQISMTTTSHLPVAESPDMKKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33568 GAB1::ENSG00000250969 ENSG00000109458.10::ENSG00000250969.1 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GAB1 ENSG00000109458.10 protein_coding + + chr4:143336876-143474565:+ chr4:143337260:+ chr4:144258029-144395718:+ chr4:144258413:+ ENSG00000250969 ENSG00000250969.1 lncRNA + + chr4:143286293-143329858:+ chr4:143329279:+ chr4:144207446-144251011:+ chr4:144250432:+ chr4:143354059,chr4:143354059 chr4:143291156,chr4:143291153 NA NA chr4:144275212,chr4:144275212 chr4:144212309,chr4:144212306 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["GAB1:Oncogene"] 26 10 26 10 ONLY_REF_SPLICE YES_LDAS 0.3899 GT 1.8256 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33570 MLKL::GLG1 ENSG00000168404.13::ENSG00000090863.12 HCC1937 SRR8616179 SRR8639162 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2456 FALSE NA FALSE NA MLKL ENSG00000168404.13 protein_coding - - chr16:74671855-74700960:- chr16:74674960:- chr16:74705753-74734858:- chr16:74708858:- GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74532153:- chr16:74481325-74641042:- chr16:74566051:- chr16:74674811,chr16:74674816 chr16:74579792,chr16:74579794 NA NA chr16:74708709,chr16:74708714 chr16:74613690,chr16:74613692 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PK_Tyr_Ser-Thr|218-466|8.2e-44^Pkinase|223-464|6.1e-34^DUF5672|343-406|4.4e-05 Cys_rich_FGFR-PARTIAL|~439-471|2.7e-18^Cys_rich_FGFR|479-536|8.4e-19^Cys_rich_FGFR|540-601|5.3e-16^Cys_rich_FGFR|613-667|2.3e-19^Cys_rich_FGFR|670-728|5.2e-17^Cys_rich_FGFR|732-786|4.2e-12^Cys_rich_FGFR|800-855|4.3e-22^Cys_rich_FGFR|858-911|3.1e-19^Cys_rich_FGFR|915-974|7e-20^Cys_rich_FGFR|983-1038|2.1e-17^Cys_rich_FGFR|1046-1100|6.6e-21 ["DepMap2023"];INTRACHROMOSOMAL[chr16:0.06Mb];NEIGHBORS[64711] 6 4 6 4 ONLY_REF_SPLICE YES_LDAS 0.1083 GT 1.8062 AG 1.7968 ENST00000308807.12 1-1381 ENST00000205061.9 439-3612 chr16|-|[0]74674960-74675100[1]|[0]74675355-74675404[2]|[1]74675613-74675764[0]|[2]74678899-74678980[2]|[1]74682651-74682786[1]|[0]74685486-74685583[2]|[1]74691277-74691463[1]|[0]74692342-74692416[1]|[0]74695298-74695757[0]<==>chr16|-|[2]74452056-74452131[2]|[1]74453171-74453334[0]|[2]74456649-74456755[1]|[0]74457874-74457994[0]|[2]74459682-74459789[0]|[2]74462094-74462195[0]|[2]74462488-74462630[1]|[0]74463356-74463479[0]|[2]74465676-74465813[0]|[2]74467756-74467848[0]|[2]74468946-74469063[2]|[1]74469985-74470073[0]|[2]74471173-74471286[0]|[2]74472349-74472411[0]|[2]74474546-74474632[0]|[2]74477396-74477533[0]|[2]74480241-74480394[2]|[1]74483023-74483124[2]|[1]74485796-74485917[0]|[2]74491001-74491215[1]|[0]74492957-74493140[0]|[2]74494760-74494831[0]|[2]74496441-74496644[0]|[2]74503531-74503746[0]|[2]74508839-74508925[0]|[2]74532121-74532153[0] atggaaaatttgaagcatattatcacccttggccaggtcatccacaaacggtgtgaagagatgaaatactgcaagaaacagtgccggcgcctgggccaccgcgtcctcggcctgatcaagcctctggagatgctccaggaccaaggaaagaggagcgtgccctctgagaagttaaccacagccatgaaccgcttcaaggctgccctggaggaggctaatggggagatagaaaagttcagcaatagatccaatatctgcaggtttctaacagcaagccaggacaaaatactcttcaaggacgtgaacaggaagctgagtgatgtctggaaggagctctcgctgttacttcaggttgagcaacgcatgcctgtttcacccataagccaaggagcgtcctgggcacaggaagatcagcaggatgcagacgaagacaggcgagctttccagatgctaagaagagataatgaaaaaatagaagcttcactgagacgattagaaatcaacatgaaagaaatcaaggaaactttgaggcagtatttaccaccaaaatgcatgcaggagatcccgcaagagcaaatcaaggagatcaagaaggagcagctttcaggatccccgtggattctgctaagggaaaatgaagtcagcacactttataaaggagaataccacagagctccagtggccataaaagtattcaaaaaactccaggctggcagcattgcaatagtgaggcagactttcaataaggagatcaaaaccatgaagaaattcgaatctcccaacatcctgcgtatatttgggatttgcattgatgaaacagtgactccgcctcaattctccattgtcatggagtactgtgaactcgggaccctgagggagctgttggatagggaaaaagacctcacacttggcaagcgcatggtcctagtcctgggggcagcccgaggcctataccggctacaccattcagaagcacctgaactccacggaaaaatcagaagctcaaacttcctggtaactcaaggctaccaagtgaagcttgcaggatttgagttgaggaaaacacagacttccatgagtttgggaactacgagagaaaagacagacagagtcaaatctacagcatatctctcacctcaggaactggaagatgtattttatcaatatgatgtaaagtctgaaatatacagctttggaatcgtcctctgggaaatcgccactggagatatcccgtttcaaggctgtaattctgagaagatccgcaagctggtggctgtgaagcggcagcaggagccactgggtgaagactgcccttcagagctgcgggagatcattgatgagtgccgggcccatgatccctctgtgcggccctctgtggatgCCTGAAAATGAAATTTCTTCAGACTGCAATCATTTGTTGTGGAATTATAAGCTGAACCTAACTACAGATCCCAAATTTGAATCTGTGGCCAGAGAGGTTTGCAAATCTACTATAACAGAGATTAAAGAATGTGCTGATGAACCGGTTGGAAAAGGTTACATGGTTTCCTGCTTGGTGGATCACCGAGGCAACATCACTGAGTATCAGTGTCACCAGTACATTACCAAGATGACGGCCATCATTTTTAGTGATTACCGTTTAATCTGTGGCTTCATGGATGACTGCAAAAATGACATCAACATTCTGAAATGTGGCAGTATTCGGCTTGGAGAAAAGGATGCACATTCACAAGGTGAGGTGGTATCATGCTTGGAGAAAGGCCTGGTGAAAGAAGCAGAAGAAAGAGAACCCAAGATTCAAGTTTCTGAACTCTGCAAGAAAGCCATTCTCCGGGTGGCTGAGCTGTCATCGGATGACTTTCACTTAGACCGGCATTTATATTTTGCTTGCCGAGATGATCGGGAGCGTTTTTGTGAAAATACACAAGCTGGTGAGGGCAGAGTGTATAAGTGCCTCTTTAACCATAAATTTGAAGAATCCATGAGTGAAAAGTGTCGAGAAGCACTTACAACCCGCCAAAAGCTGATTGCCCAGGATTATAAAGTCAGTTATTCATTGGCCAAATCCTGTAAAAGTGACTTGAAGAAATACCGGTGCAATGTGGAAAACCTTCCGCGATCGCGTGAAGCCAGGCTCTCCTACTTGTTAATGTGCCTGGAGTCAGCTGTACACAGAGGGCGACAAGTCAGCAGTGAGTGCCAGGGGGAGATGCTGGATTACCGACGCATGTTGATGGAAGACTTTTCTCTGAGCCCTGAGATCATCCTAAGCTGTCGGGGGGAGATTGAACACCATTGTTCCGGATTACATCGAAAAGGGCGGACCCTACACTGTCTGATGAAAGTAGTTCGAGGGGAGAAGGGGAACCTTGGAATGAACTGCCAGCAGGCGCTTCAAACACTGATTCAGGAGACTGACCCTGGTGCAGATTACCGCATTGATCGAGCTTTGAATGAAGCTTGTGAATCTGTAATCCAGACAGCCTGCAAACATATAAGATCTGGAGACCCAATGATCTTGTCGTGCCTGATGGAACATTTATACACAGAGAAGATGGTAGAAGACTGTGAACACCGTCTCTTAGAGCTGCAGTATTTCATCTCCCGGGATTGGAAGCTGGACCCTGTCCTGTACCGCAAGTGCCAGGGAGACGCTTCTCGTCTTTGCCACACCCACGGTTGGAATGAGACCAGTGAATTTATGCCTCAGGGAGCTGTGTTCTCTTGTTTATACAGACACGCCTACCGCACTGAGGAACAGGGAAGGAGGCTCTCACGGGAGTGCCGAGCTGAAGTCCAAAGGATCCTACACCAGCGTGCCATGGATGTCAAGCTGGATCCTGCCCTCCAGGATAAGTGCCTGATTGATCTGGGAAAATGGTGCAGTGAGAAAACAGAGACTGGACAGGAGCTGGAGTGCCTTCAGGACCATCTGGATGACTTGGTGGTGGAGTGTAGAGATATAGTTGGCAACCTCACTGAGTTAGAATCAGAGGATATTCAAATAGAAGCCTTGCTGATGAGAGCCTGTGAGCCCATAATTCAGAACTTCTGCCACGATGTGGCAGATAACCAGATAGACTCTGGGGACCTGATGGAGTGTCTGATACAGAACAAACACCAGAAGGACATGAACGAGAAGTGTGCCATCGGAGTTACCCACTTCCAGCTGGTGCAGATGAAGGATTTTCGGTTTTCTTACAAGTTTAAAATGGCCTGCAAGGAGGACGTGTTGAAGCTTTGCCCAAACATAAAAAAGAAGGTGGACGTGGTGATCTGCCTGAGCACGACCGTGCGCAATGACACTCTGCAGGAAGCCAAGGAGCACAGGGTGTCCCTGAAGTGCCGCAGGCAGCTCCGTGTGGAGGAGCTGGAGATGACGGAGGACATCCGCTTGGAGCCAGATCTATACGAAGCCTGCAAGAGTGACATCAAAAACTTCTGTTCCGCTGTGCAATATGGCAACGCTCAGATTATCGAATGTCTGAAAGAAAACAAGAAGCAGCTAAGCACCCGCTGCCACCAAAAAGTATTTAAGCTGCAGGAGACAGAGATGATGGACCCAGAGCTAGACTACACCCTCATGAGGGTCTGCAAGCAGATGATAAAGAGGTTCTGTCCGGAAGCAGATTCTAAAACCATGTTGCAGTGCTTGAAGCAAAATAAAAACAGTGAATTGATGGATCCCAAATGCAAACAGATGATAACCAAGCGCCAGATCACCCAGAACACAGATTACCGCTTAAACCCCATGTTAAGAAAAGCCTGTAAAGCTGACATTCCTAAATTCTGTCACGGTATCCTGACTAAGGCCAAGGATGATTCAGAATTAGAAGGACAAGTCATCTCTTGCCTGAAGCTGAGATATGCTGACCAGCGCCTGTCTTCAGACTGTGAAGACCAGATCCGAATCATTATCCAGGAGTCCGCCCTGGACTACCGCCTGGATCCTCAGCTCCAGCTGCACTGCTCAGACGAGATCTCCAGTCTATGTGCTGAAGAAGCAGCAGCCCAAGAGCAGACAGGTCAGGTGGAGGAGTGCCTCAAGGTCAACCTGCTCAAGATCAAAACAGAATTGTGTAAAAAGGAAGTGCTAAACATGCTGAAGGAAAGCAAAGCAGACATCTTTGTTGACCCGGTACTTCATACTGCTTGTGCCCTGGACATTAAACACCACTGCGCAGCCATCACCCCTGGCCGCGGGCGTCAAATGTCCTGTCTCATGGAAGCACTGGAGGATAAGCGGGTGAGGTTACAGCCCGAGTGCAAAAAGCGCCTCAATGACCGGATTGAGATGTGGAGTTACGCAGCAAAGGTGGCCCCAGCAGATGGCTTCTCTGATCTTGCCATGCAAGTAATGACGTCTCCATCTAAGAACTACATTCTCTCTGTGATCAGTGGGAGCATCTGTATATTGTTCCTGATTGGCCTGATGTGTGGACGGATCACCAAGCGAGTGACACGAGAGCTCAAGGACAGGCTACAATACAGGTCAGAGACAATGGCTTATAAAGGTTTAGTGTGGTCTCAGGATGTGACAGGCAGTCCAGCCTGA MENLKHIITLGQVIHKRCEEMKYCKKQCRRLGHRVLGLIKPLEMLQDQGKRSVPSEKLTTAMNRFKAALEEANGEIEKFSNRSNICRFLTASQDKILFKDVNRKLSDVWKELSLLLQVEQRMPVSPISQGASWAQEDQQDADEDRRAFQMLRRDNEKIEASLRRLEINMKEIKETLRQYLPPKCMQEIPQEQIKEIKKEQLSGSPWILLRENEVSTLYKGEYHRAPVAIKVFKKLQAGSIAIVRQTFNKEIKTMKKFESPNILRIFGICIDETVTPPQFSIVMEYCELGTLRELLDREKDLTLGKRMVLVLGAARGLYRLHHSEAPELHGKIRSSNFLVTQGYQVKLAGFELRKTQTSMSLGTTREKTDRVKSTAYLSPQELEDVFYQYDVKSEIYSFGIVLWEIATGDIPFQGCNSEKIRKLVAVKRQQEPLGEDCPSELREIIDECRAHDPSVRPSVDA*K*NFFRLQSFVVEL*AEPNYRSQI*ICGQRGLQIYYNRD*RMC**TGWKRLHGFLLGGSPRQHH*VSVSPVHYQDDGHHF**LPFNLWLHG*LQK*HQHSEMWQYSAWRKGCTFTR*GGIMLGERPGERSRRKRTQDSSF*TLQESHSPGG*AVIG*LSLRPAFIFCLPR*SGAFL*KYTSW*GQSV*VPL*P*I*RIHE*KVSRSTYNPPKADCPGL*SQLFIGQIL*K*LEEIPVQCGKPSAIA*SQALLLVNVPGVSCTQRATSQQ*VPGGDAGLPTHVDGRLFSEP*DHPKLSGGD*TPLFRITSKRADPTLSDESSSRGEGEPWNELPAGASNTDSGD*PWCRLPH*SSFE*SL*ICNPDSLQTYKIWRPNDLVVPDGTFIHREDGRRL*TPSLRAAVFHLPGLEAGPCPVPQVPGRRFSSLPHPRLE*DQ*IYASGSCVLLFIQTRLPH*GTGKEALTGVPS*SPKDPTPACHGCQAGSCPPG*VPD*SGKMVQ*ENRDWTGAGVPSGPSG*LGGGV*RYSWQPH*VRIRGYSNRSLADESL*AHNSELLPRCGR*PDRLWGPDGVSDTEQTPEGHEREVCHRSYPLPAGADEGFSVFLQV*NGLQGGRVEALPKHKKEGGRGDLPEHDRAQ*HSAGSQGAQGVPEVPQAAPCGGAGDDGGHPLGARSIRSLQE*HQKLLFRCAIWQRSDYRMSERKQEAAKHPLPPKSI*AAGDRDDGPRARLHPHEGLQADDKEVLSGSRF*NHVAVLEAK*KQ*IDGSQMQTDDNQAPDHPEHRLPLKPHVKKSL*S*HS*ILSRYPD*GQG*FRIRRTSHLLPEAEIC*PAPVFRL*RPDPNHYPGVRPGLPPGSSAPAALLRRDLQSMC*RSSSPRADRSGGGVPQGQPAQDQNRIV*KGSAKHAEGKQSRHLC*PGTSYCLCPGH*TPLRSHHPWPRASNVLSHGSTGG*AGEVTARVQKAPQ*PD*DVELRSKGGPSRWLL*SCHASNDVSI*ELHSLCDQWEHLYIVPDWPDVWTDHQASDTRAQGQATIQVRDNGL*RFSVVSGCDRQSSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Mixed lineage kinase domain-like protein TKL TKL-Unique Q8NB16 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33572 SLC9A7::ALDH7A1 ENSG00000065923.10::ENSG00000164904.18 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2457 FALSE NA FALSE NA SLC9A7 ENSG00000065923.10 protein_coding - - chrX:46599251-46759118:- chrX:46613289:- chrX:46458686-46618553:- chrX:46472724:- ALDH7A1 ENSG00000164904.18 protein_coding - - chr5:126531200-126595362:- chr5:126550293:- chr5:125866892-125931054:- chr5:125885985:- chrX:46610269,chrX:46610273 chr5:126550782,chr5:126550783 NA NA chrX:46469704,chrX:46469708 chr5:125886474,chr5:125886475 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Na_H_Exchanger|79-535|2.7e-82 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chrX--chr5] 273 99 272.75 98.84 ONLY_REF_SPLICE YES_LDAS 2.9417 GT 1.9656 AG 1.6895 ENST00000616978.5 1-1929 ENST00000635851.1 1316-1636 chrX|-|[2]46613289-46613394[2]|[1]46620977-46621059[0]|[2]46631586-46631649[2]|[1]46635589-46635648[2]|[1]46643236-46643389[1]|[0]46648686-46648797[0]|[2]46651110-46651223[0]|[2]46651316-46651404[1]|[0]46653609-46653714[0]|[2]46662016-46662157[2]|[1]46662538-46662643[1]|[0]46669607-46669719[2]|[1]46672551-46672627[0]|[2]46679678-46679755[0]|[2]46682336-46682535[1]|[0]46758705-46759029[0]<==>chr5|-|[2]126540916-126540988[2]|[1]126546324-126546399[1]|[0]126549929-126550002[2]|[1]126550196-126550293[0] atggagcctggtgacgcggcgcgccctggctcgggtcgggctaccggggcgccgccgccgcggctgctgctgctgccgctgctgctgggttgggggctgcgagtcgcggccgcggcctcggcctcctcctctggggcggcggcggaggacagcagcgccatggaggagctcgctactgagaaggaggcggaggagagccaccggcaagacagcgtgagcctgctcaccttcatcctgctgctcacgctcaccatcctcaccatctggctcttcaagcaccgccgggtgcgctttctgcacgagaccgggctggccatgatctatgggctcatcgttggggtgatcctgaggtatggtacccctgctaccagtggccgtgacaaatcactcagctgcactcaggaagacagggccttcagtaccttattagtgaatgtcagcggaaagttcttcgaatacactctgaaaggagaaatcagtcctggcaagatcaacagcgtagagcagaatgatatgctacggaaggtaacattcgatccagaagtatttttcaacattcttctgcctccaattatttttcatgctggatacagcttaaagaagagacactttttcagaaatcttggatctatactggcctatgccttcttggggactgctgtttcatgcttcattattggaaatctcatgtatggtgtggtgaagctcatgaagattatgggacagctctcagataaattttactacacagattgtctcttttttggagcaatcatctctgccactgacccagtgactgtgctggcgatatttaatgaattgcatgcagacgtggatctttacgcacttctttttggagagagcgtcctaaatgatgctgttgccattgtactgtcctcgtctattgttgcctaccagccagcgggactgaacactcacgcctttgatgctgctgccttttttaagtcagttggcatttttctaggtatatttagtggctcttttaccatgggagctgtgactggtgttgtgactgctctagtgactaagtttaccaaactgcactgcttccccctgctggagacggcgctgttcttcctcatgtcctggagcacgtttctcttggcagaagcctgcggatttacaggtgttgtagctgtccttttctgtggaatcacacaagctcattacacctacaacaatctgtcggtggaatcaagaagtcgaaccaagcagctctttgaggtgttacatttcctggcagagaacttcatcttctcctacatgggcctggcactgtttaccttccagaagcacgttttcagccccattttcatcatcggagcttttgttgccatcttcctgggcagagccgcgcacatctacccgctctccttcttcctcaacttgggcagaaggcataagattggctggaattttcaacacatgatgatgttttcaggcctcaggggagcaatggcatttgcgttggccatccgtgacacggcatcctatgctcgccagatgatgttcacgaccacccttctcattgtgttcttcactgtctggatcattggaggaggcacgacacccatgttgtcatggcttaacatcagagttggcgtcgaggagccctccgaagaggaccagaatgaacaccactggcagtacttcagagttggtgttgaccccgatcaagacccaccacccaacaacgacagctttcaagtcttacaaggggacggcccagattctgccagaggaaaccggacaaaacaggagagcgcatggatattcaggctgtggtacagctttgatcacaattacctgaagcccatcctcacacacagtggtcccccactaaccaccacgctccccgcctggtgtggcttactagctcgatgtctgaccagtccccaggtgtacgatAATGAAGAAGAGGTCTTTGCATGGAATAATGAAGTAAAACAGGGACTTTCAAGTAGCATCTTTACCAAAGATCTGGGCAGAATCTTTCGCTGGCTTGGACCTAAAGGATCAGACTGTGGCATTGTAAATGTCAACATTCCAACAAGTGGGGCTGAGATTGGAGGTGCCTTTGGAGGAGAAAAGCACACTGGTGGTGGCAGGGAGTCTGGCAGTGATGCCTGGAAACAGTACATGAGAAGGTCTACTTGGAAAATGTACACAAAGCGTGTTTATTGGGATGATTTCTCATTCATCCTGATCACGGTTGCTGCTTCCTCCTAA MEPGDAARPGSGRATGAPPPRLLLLPLLLGWGLRVAAAASASSSGAAAEDSSAMEELATEKEAEESHRQDSVSLLTFILLLTLTILTIWLFKHRRVRFLHETGLAMIYGLIVGVILRYGTPATSGRDKSLSCTQEDRAFSTLLVNVSGKFFEYTLKGEISPGKINSVEQNDMLRKVTFDPEVFFNILLPPIIFHAGYSLKKRHFFRNLGSILAYAFLGTAVSCFIIGNLMYGVVKLMKIMGQLSDKFYYTDCLFFGAIISATDPVTVLAIFNELHADVDLYALLFGESVLNDAVAIVLSSSIVAYQPAGLNTHAFDAAAFFKSVGIFLGIFSGSFTMGAVTGVVTALVTKFTKLHCFPLLETALFFLMSWSTFLLAEACGFTGVVAVLFCGITQAHYTYNNLSVESRSRTKQLFEVLHFLAENFIFSYMGLALFTFQKHVFSPIFIIGAFVAIFLGRAAHIYPLSFFLNLGRRHKIGWNFQHMMMFSGLRGAMAFALAIRDTASYARQMMFTTTLLIVFFTVWIIGGGTTPMLSWLNIRVGVEEPSEEDQNEHHWQYFRVGVDPDQDPPPNNDSFQVLQGDGPDSARGNRTKQESAWIFRLWYSFDHNYLKPILTHSGPPLTTTLPAWCGLLARCLTSPQVYDNEEEVFAWNNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGGRESGSDAWKQYMRRSTWKMYTKRVYWDDFSFILITVAASS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33574 METTL15::ENSG00000289526 ENSG00000169519.21::ENSG00000289526.2 HCC1500 SRR8616180 SRR8639184 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA METTL15 ENSG00000169519.21 protein_coding + + chr11:28108248-28527041:+ chr11:28296931:+ chr11:28129795-28548588:+ chr11:28318478:+ ENSG00000289526 ENSG00000289526.2 lncRNA - - chr11:35014075-35067192:- chr11:35014618:- chr11:35035622-35088739:- chr11:35036165:- chr11:28325324,chr11:28325325 chr11:35015462,chr11:35015461 NA NA chr11:28346871,chr11:28346872 chr11:35037009,chr11:35037008 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 28 11 28 11 ONLY_REF_SPLICE YES_LDAS 0.3088 GT 1.9656 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33581 PSD3::CSGALNACT1 ENSG00000156011.19::ENSG00000147408.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2462 TRUE 4508 TRUE 1709 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19418750:- chr8:19261672-19615540:- chr8:19276261:- chr8:18976435,chr8:18976438 chr8:19419517,chr8:19419517 NA NA chr8:18833945,chr8:18833948 chr8:19277028,chr8:19277028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.32Mb] 272 32 272 30.34 ONLY_REF_SPLICE YES_LDAS 3.2101 GT 1.4566 AG 1.585 ENST00000327040.13 1-21 ENST00000454498.6 1133-1599 chr8|-|[2]19013563-19013583[0]<==>chr8|-|[2]19405780-19406069[1]|[0]19408613-19408694[0]|[2]19418656-19418750[1] atggaaggaaggagcgcagcgGGAAGAAGGTATTTTATCCAGTTCTTTTCAGTCAGTACAATCCTGGCATAATATACGGCCACCATGATGCAGTCCCTCCCTTGGAACAGCAGCTGGTCATAAAGAAGGAAACTGGATTTTGGAGAGACTTTGGATTTGGGATGACGTGTCAGTATCGGTCAGACTTCATCAATATAGGTGGGTTTGATCTGGACATCAAAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCTCATAGTGGTACGGACGCCTGTGCGAGGACTCTTCCACCTCTGGCATGAGAAGCGCTGCATGGACGAGCTGACCCCCGAGCAGTACAAGATGTGCATGCAGTCCAAGGCCATGAACGAGGCATCCCACGGCCAGCTGGGCATGCTGGTGTTCAGGCACGAGATAGAGGCTCACCTTCGCAAACAGAAACAGAAGACAAGTAGCAAAAAAACATGA MEGRSAAGRRYFIQFFSVSTILA*YTATMMQSLPWNSSWS*RRKLDFGETLDLG*RVSIGQTSSI*VGLIWTSKAGAERMCTFIASISTATS*WYGRLCEDSSTSGMRSAAWTS*PPSSTRCACSPRP*TRHPTASWACWCSGTR*RLTFANRNRRQVAKKH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33582 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2459 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 191 155 191 81.33 ONLY_REF_SPLICE YES_LDAS 2.8915 GT 1.8295 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33585 PEDS1::GMDS ENSG00000240849.11::ENSG00000112699.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2464 FALSE NA FALSE NA PEDS1 ENSG00000240849.11 protein_coding - - chr20:50118254-50153734:- chr20:50143502:- chr20:48734791-48770271:- chr20:48760039:- GMDS ENSG00000112699.11 protein_coding - - chr6:1623806-2245605:- chr6:1624540:- chr6:1624041-2245839:- chr6:1624775:- chr20:50140183,chr20:50140192 chr6:1639846,chr6:1639847 NA NA chr20:48756720,chr20:48756729 chr6:1640080,chr6:1640081 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame MARVEL|45-78|0.028^Lipid_desat-PARTIAL|85-241~|5.5e-79^MARVEL|170-232|0.00023 none none 99 29 99 29 ONLY_REF_SPLICE YES_LDAS 1.3591 GT 1.8892 AG 1.9329 ENST00000371652.9 1-241 ENST00000530927.5 898-1029 chr20|-|[0]50143502-50143621[1]|[0]50153517-50153637[0]<==>chr6|-|[2]1624169-1624231[0]|[2]1624472-1624540[0] atggcgggcgccgagaactggccgggccagcagctggagctggacgaggacgaggcgtcttgttgccgctggggcgcgcagcacgccggggcccgcgagctggctgcgctctactcgccaggcaagcgcctccaggagtggtgctctgtgatcctgtgcttcagcctcatcgcccacaacctggtccatctcctgctgctggcccgctgggaggacacacccctcgtcatactcggtgttgGACTTTCTGCAGGGCGACTGCACCAAAGCGAAACAGAAGCTGAACTGGAAGCCCCGGGTCGCTTTCGATGAGCTGGTGAGGGAGATGGTGCACGCCGACGTGGAGCTCATGAGGACAAACCCCAATGCCTGA MAGAENWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHNLVHLLLLARWEDTPLVILGVGLSAGRLHQSETEAELEAPGRFR*AGEGDGARRRGAHEDKPQCL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33586 AP5B1::CASC8 ENSG00000254470.3::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4512 TRUE 1712 AP5B1 ENSG00000254470.3 protein_coding - - chr11:65773898-65780976:- chr11:65780442:- chr11:65541369-65548447:- chr11:65547913:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr11:65780247,chr11:65780251 chr8:127385968,chr8:127385969 NA NA chr11:65547718,chr11:65547722 chr8:128398213,chr8:128398214 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr8] 88 19 88 16.89 ONLY_REF_SPLICE YES_LDAS 1.1137 GT 1.5301 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33587 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2460 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127794734:+ chr8:128806772-129199347:+ chr8:128806980:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 85 194 85 91.8 ONLY_REF_SPLICE YES_LDAS 1.8772 GT 1.8295 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33588 BAG4::ASH2L ENSG00000156735.11::ENSG00000129691.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2465 TRUE 4513 TRUE 1713 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38192795:+ chr8:38034051-38070819:+ chr8:38050313:+ ASH2L ENSG00000129691.16 protein_coding + + chr8:38105493-38144076:+ chr8:38110379:+ chr8:37963011-38001594:+ chr8:37967897:+ chr8:38197635 chr8:38109181 NA NA chr8:38055153 chr8:37966699 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DMP12-PARTIAL|345-378~|3.2e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.03Mb];LOCAL_REARRANGEMENT:+:[32457] 59 27 59 24.15 ONLY_REF_SPLICE YES_LDAS 0.8828 GT 1.9086 AG 1.6895 ENST00000287322.5 1-378 ENST00000517496.5 256-366 chr8|+|[0]38176870-38177139[2]|[0]38192688-38192795[2]<==>chr8|+|[0]38110379-38110467[1]|[2]38110739-38110760[2] atgtcggccctgaggcgctcgggctacggccccagtgacggtccgtcctacggccgctactacgggcctgggggtggagatgtgccggtacacccacctccacccttatatcctcttcgccctgaacctccccagcctcccatttcctggcgggtgcgcgggggcggcccggcggagaccacctggctgggagaaggcggaggaggcgatggctactatccctcgggaggcgcctggccagagcctggtcgagccggaggaagccaccaggagcagccaccatatcctagctacaattctaactattggaattctactgcgagatctagggctccttacccaagtacatatcctgtaagaccagaattgcaaggccagATCCTGTCTACCTTTCATGACCAACTACAGTTTTCATTGCAACGTCTGCCATCACAGTGGGAATACCTATTTCCTCCGGAAGCAAGCAAACTTGAAGGAAATGTGCCTTAG MSALRRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPLYPLRPEPPQPPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQEQPPYPSYNSNYWNSTARSRAPYPSTYPVRPELQGQILSTFHDQLQFSLQRLPSQWEYLFPPEASKLEGNVP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33589 ENSG00000291073::ENSG00000273956 ENSG00000291073.1::ENSG00000273956.1 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2467 FALSE NA FALSE NA ENSG00000291073 ENSG00000291073.1 lncRNA - - chr16:21446683-21520444:- chr16:21519828:- chr16:21458004-21531765:- chr16:21531149:- ENSG00000273956 ENSG00000273956.1 lncRNA - - chr16:21526824-21531141:- chr16:21527214:- chr16:21538145-21542462:- chr16:21538535:- chr16:21505789,chr16:21505793 chr16:21529668,chr16:21529669 NA NA chr16:21517110,chr16:21517114 chr16:21540989,chr16:21540990 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 46 20 45.98 20 ONLY_REF_SPLICE YES_LDAS 0.7006 GT 1.6729 AG 1.7056 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33590 PVT1::CASC8 ENSG00000249859.14::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2461 TRUE 4507 TRUE 1708 PVT1 ENSG00000249859.14 lncRNA + + chr8:127794526-128187101:+ chr8:127796008:+ chr8:128806772-129199347:+ chr8:128808254:+ CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127290060:- chr8:128302053-128494384:- chr8:128302305:- chr8:127880915,chr8:127880915,chr8:127880915,chr8:127880915,chr8:127886290,chr8:127886288,chr8:127886338 chr8:127358912,chr8:127358923,chr8:127358937,chr8:127358943,chr8:127386183,chr8:127386185,chr8:127386706 NA NA chr8:128893161,chr8:128893161,chr8:128893161,chr8:128893161,chr8:128898536,chr8:128898534,chr8:128898584 chr8:128371158,chr8:128371169,chr8:128371183,chr8:128371189,chr8:128398428,chr8:128398430,chr8:128398951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["PVT1:Oncogene"];["DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.31Mb] 39 165 39 30.87 ONLY_REF_SPLICE YES_LDAS 0.7419 GT 1.9329 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33591 PSD3::CSGALNACT1 ENSG00000156011.19::ENSG00000147408.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2463 TRUE 4508 TRUE 1709 PSD3 ENSG00000156011.19 protein_coding - - chr8:18527303-19084730:- chr8:19013563:- chr8:18384813-18942240:- chr8:18871073:- CSGALNACT1 ENSG00000147408.16 protein_coding - - chr8:19404161-19758029:- chr8:19408694:- chr8:19261672-19615540:- chr8:19266205:- chr8:18976435,chr8:18976438 chr8:19419517,chr8:19419517 NA NA chr8:18833945,chr8:18833948 chr8:19277028,chr8:19277028 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DEEPEST2019","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.32Mb] 36 15 36 1.66 ONLY_REF_SPLICE YES_LDAS 0.3998 GT 1.4566 AG 1.6402 ENST00000327040.13 1-21 ENST00000454498.6 1228-1599 chr8|-|[2]19013563-19013583[0]<==>chr8|-|[2]19405780-19406069[1]|[0]19408613-19408694[0] atggaaggaaggagcgcagcgGTCATAAAGAAGGAAACTGGATTTTGGAGAGACTTTGGATTTGGGATGACGTGTCAGTATCGGTCAGACTTCATCAATATAGGTGGGTTTGATCTGGACATCAAAGGCTGGGGCGGAGAGGATGTGCACCTTTATCGCAAGTATCTCCACAGCAACCTCATAGTGGTACGGACGCCTGTGCGAGGACTCTTCCACCTCTGGCATGAGAAGCGCTGCATGGACGAGCTGACCCCCGAGCAGTACAAGATGTGCATGCAGTCCAAGGCCATGAACGAGGCATCCCACGGCCAGCTGGGCATGCTGGTGTTCAGGCACGAGATAGAGGCTCACCTTCGCAAACAGAAACAGAAGACAAGTAGCAAAAAAACATGA MEGRSAAVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSKKT* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33595 SIPA1L3::TFCP2 ENSG00000105738.11::ENSG00000135457.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2468 FALSE NA FALSE NA SIPA1L3 ENSG00000105738.11 protein_coding + + chr19:37907208-38208369:+ chr19:37907358:+ chr19:38397848-38699009:+ chr19:38397998:+ TFCP2 ENSG00000135457.11 protein_coding - - chr12:51093656-51173135:- chr12:51118772:- chr12:51487439-51566918:- chr12:51512555:- chr19:37945518,chr19:37945516,chr19:37945491 chr12:51164192,chr12:51164194,chr12:51164364 NA NA chr19:38436158,chr19:38436156,chr19:38436131 chr12:51557975,chr12:51557977,chr12:51558147 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr12] 28 13 28 13 ONLY_REF_SPLICE YES_LDAS 0.4353 GT 1.6895 AG 1.8295 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33597 BAG4::ASH2L ENSG00000156735.11::ENSG00000129691.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2466 TRUE 4513 TRUE 1713 BAG4 ENSG00000156735.11 protein_coding + + chr8:38176533-38213301:+ chr8:38177139:+ chr8:38034051-38070819:+ chr8:38034657:+ ASH2L ENSG00000129691.16 protein_coding + + chr8:38105493-38144076:+ chr8:38110379:+ chr8:37963011-38001594:+ chr8:37967897:+ chr8:38197635 chr8:38109181 NA NA chr8:38055153 chr8:37966699 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:0.03Mb];LOCAL_REARRANGEMENT:+:[32457] 23 12 23 2.85 ONLY_REF_SPLICE YES_LDAS 0.2745 GT 1.5656 AG 1.6895 ENST00000432471.6 1-270 ENST00000517496.5 256-366 chr8|+|[0]38176870-38177139[2]<==>chr8|+|[0]38110379-38110467[1]|[2]38110739-38110760[2] atgtcggccctgaggcgctcgggctacggccccagtgacggtccgtcctacggccgctactacgggcctgggggtggagatgtgccggtacacccacctccacccttatatcctcttcgccctgaacctccccagcctcccatttcctggcgggtgcgcgggggcggcccggcggagaccacctggctgggagaaggcggaggaggcgatggctactatccctcgggaggcgcctggccagagcctggtcgagccggaggaagccaccagATCCTGTCTACCTTTCATGACCAACTACAGTTTTCATTGCAACGTCTGCCATCACAGTGGGAATACCTATTTCCTCCGGAAGCAAGCAAACTTGAAGGAAATGTGCCTTAG MSALRRSGYGPSDGPSYGRYYGPGGGDVPVHPPPPLYPLRPEPPQPPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAGGSHQILSTFHDQLQFSLQRLPSQWEYLFPPEASKLEGNVP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33598 PPFIA1::ANO1 ENSG00000131626.19::ENSG00000131620.18 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2472 FALSE NA FALSE NA PPFIA1 ENSG00000131626.19 protein_coding + + chr11:70270690-70385312:+ chr11:70372574:+ chr11:70116796-70231418:+ chr11:70218680:+ ANO1 ENSG00000131620.18 protein_coding + + chr11:69985907-70189530:+ chr11:70078542:+ chr11:69832013-70035636:+ chr11:69924648:+ chr11:70374756,chr11:70374746 chr11:70062416,chr11:70062403 NA NA chr11:70220862,chr11:70220852 chr11:69908522,chr11:69908509 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Crescentin|23-196|0.013^Crescentin|229-389|1.4e-06^Crescentin|368-498|0.013^Crescentin|613-645|0.026^SAM_1|868-931|1.7e-08^SAM_2|894-931|0.0001^SAM_1|983-1046|8e-18^SAM_2|991-1046|4e-11^SAM_2|1069-1128|1.2e-09^SAM_1|1071-1100|1.3e-05 Anoct_dimer|95-380|1e-84^UPF0182|366-421|0.24^Anoctamin|383-989|4.5e-162^DUF2207_C|383-502|0.00014^PRRSV_2b|389-417|0.076^Anoct_dimer|507-541|0.18^DUF2207_C|528-641|0.00014^PRRSV_2b|564-621|0.00045^UPF0182|578-692|6.7e-05^PRRSV_2b|634-653|3.3^Anoct_dimer|763-833|0.056^DUF2207_C|818-874|0.61 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:0.08Mb];LOCAL_REARRANGEMENT:+:[81172] 22 10 22 9.91 ONLY_REF_SPLICE YES_LDAS 0.3388 GT 1.3383 AG 1.2729 ENST00000644155.1 1-3204 ENST00000531349.6 59-3150 chr11|+|[1]70272228-70272436[2]|[0]70324402-70324503[2]|[0]70324847-70325011[2]|[0]70325500-70325574[2]|[0]70326262-70326363[2]|[0]70326597-70326818[2]|[0]70330173-70330319[2]|[0]70331960-70332094[2]|[0]70333470-70333553[2]|[0]70335563-70335694[2]|[0]70337365-70337427[2]|[0]70338374-70338453[1]|[2]70339171-70339306[2]|[0]70343669-70343892[1]|[2]70348189-70348420[2]|[0]70350994-70351023[2]|[0]70354301-70354452[1]|[2]70355639-70355811[0]|[1]70356161-70356254[1]|[2]70362095-70362176[2]|[0]70362288-70362488[2]|[0]70365373-70365435[2]|[0]70365941-70365967[2]|[0]70372215-70372390[1]|[2]70372477-70372574[0]<==>chr11|+|[1]70078542-70078714[2]|[0]70087752-70088084[2]|[0]70103066-70103164[2]|[0]70103999-70104150[1]|[2]70105734-70105788[2]|[0]70108353-70108404[0]|[1]70111126-70111191[0]|[1]70111707-70111762[2]|[0]70116458-70116499[2]|[0]70124350-70124414[1]|[2]70126061-70126195[1]|[2]70131919-70132079[0]|[1]70149710-70149792[2]|[0]70152450-70152461[2]|[0]70153057-70153128[2]|[0]70155911-70155988[2]|[0]70156947-70157021[2]|[0]70161161-70161362[0]|[1]70161622-70161733[1]|[2]70163283-70163340[2]|[0]70165470-70165570[1]|[2]70167242-70167387[0]|[1]70170887-70171039[0]|[1]70180004-70180056[2]|[0]70182502-70182686[1]|[2]70185590-70185695[2]|[0]70187738-70188004[2] gtggaggccatggttccggctccccttcacagccagatgcagattcacattttgaacagttgatggtctccatgctagaagaaagggaccgccttcttgatacactgagagagactcaagaaacgctggccttaacccaggggaagttacacgaggttggtcatgaaagagattccttgcagagacagctcaacacggcacttccacaggagttcgcagcacttactaaagaactcaatgtatgcagggaacagctccttgaaagggaagaagaaattgctgaactgaaagcagaaaggaataacaccaggctgctgttagagcatttggaatgccttgtctccaggcatgagcggtctcttaggatgaccgtggtgaagagacaagcgcagtctccagcaggcgtgtccagcgaagtggaagtgctgaaagcactgaagtccttatttgaacaccacaaagctctggatgaaaaggtgagagagcgattacgagtagcacttgaaagatgtagtttgttagaagaggaattaggtgccacacacaaagagctaatgattcttaaagaacagaataatcagaaaaaaactctaacagatggagtgctggacataaaccatgaacaagaaaatacaccaagcacgagtggaaagagatcttctgatggttctttaagccacgaggaagaccttgctaaagtaattgagctccaagaaatcataagtaagcagtcaagggaacagagccaaatgaaagaacgcctggcttccctttccagtcatgtgacagaactggaagaggatctggacacggctagaaaagatctcatcaaatctgaagaaatgaacacaaaattgcaacgagatgtccgtgaagccatggcccaaaaggaagatatggaagagagaatcactactcttgaaaaacgctacctcgctgcacagcgtgaagccacatctgtgcatgacctcaatgataaacttgaaaatgaaattgcaaataaagattctatgcatcgacagactgaagataaaaaccgccagttacaggagcgcttggaattggcagagcaaaagctgcaacagacactgaggaaggcagagacgctcccggaggtggaggcggagctggcccagagggtggcagcgctttccaaggctgaagagagacacggcaacattgaagaaaggttacgacagatggaagcacagttggaggagaagaatcaagaactgcagcgggcaaggcaaagagaaaaaatgaacgaagaacataataaacgtttatcagacactgttgacaagctgctttcagaatctaatgagaggcttcaacttcatcttaaagagagaatggctgctttggaagataagaactctcttttaagagaagttgaaagtgcaaaaaagcagttagaagaaacacaacacgataaggatcagcttgtcctaaacattgaagcactgagggctgaactagaccacatgagactaagaggtgcttcacttcatcatggccgaccccacttgggcagtgtcccagatttcaggttccccatggcagacggccacacagactcctacagcaccagtgcagtgctgcggcgcccacagaaaggccggctggcagccctgcgagatgagccttccaaggtacaaactcttaatgagcaggattgggaacgtgcccagcaagctagtgtcttggcaaatgtagcacaagcattcgagagtgatgctgacgtgtctgatggtgaagatgacagggacactctcctcagctcagttgacctgctatcgcccagcgggcaggccgacgcgcacacactagccatgatgcttcaggagcagctggacgccatcaacaaagagatcaggttgattcaggaagaaaaagaaaatacagagcagcgggcagaggagattgaaagtcgagttggcagtggaagtctagacaatcttggtcgttttagatcaatgagctccattcccccctaccctgcttcctcgcttgctagctcctcccctccgggcagtgggcgctccaccccacgaaggatccctcacagcccagctcgggaagtggacagactgggcgtcatgacccttcctagtgatttaaggaaacatcgtagaaagttgccaccttccagagaagaggtacgagatgacaagacaaccataaagtgtgaaacctccccgccttcctccccgagagcccttcggttagaccggctgcacaaaggggcgctgcacaccgtcagccacgaggacatcagggacataaggaactccacaggctcccaggatggtcccgtgagcaaccccagcagtagcaacagtagccaggactcgctccacaaagccccaaagaagaaaggcattaagtcctccattggccgcttgtttggcaagaaagaaaagggccgacctggacaaactggcaaagaagcattaggacaagctggtgtttccgagacggataactcatctcaggatgccttgggacttagcaaattggggggacaggctgaaaaaaatcgtaaacttcaaaaaaagcatgaattgctggaggaagcccggagacaaggtttaccttttgcccaatgggacgggccaacggttgtggtctggctagagctctgggttgggatgccagcctggtatgtggctgcctgccgagcaaacgtgaaaagcggggccatcatgtcggccctgtccgacacagagatccagcgtgagattggcatcagcaaccccctgcacaggctgaagctgaggctggccatccaggagatcatgtcgctgaccagcccgtctgccccgcccacatctagaacgaccacaggaaatgtctggttaacacacgaagagatggaaacgctcgcagccacgccgcaaacggaagatgaggagggaagctgggctcagacactcgcctatggggacatgaaccacgagtggatcggcaacgagtggctccccagcctgggcctcccccagtaccgcagctacttcatggagtgccttgtagacgccaggatgctggaccacttgaccaagaaagaccttcgagggcagctgaaaatggtcgacagttttcacagaaacagtttccagtgtggaattatgtgcctgagaaggttaaattatgaccggaaagaactggaaagaaaaagagaagaaagtcagagtgaaataaaagAGGCCGCCGGGGCCGTGGATGGGGAGGGCGCGCCGCCCGGCGGTCCCAGCGCACAGGCGGCCACGATGAGGGTCAACGAGAAGTACTCGACGCTCCCGGCCGAGGACCGCAGCGTCCACATCATCAACATCTGCGCCATCGAGGACATCGGCTACCTGCCGTCCGAGGGCACGCTGCTGAACTCCTTATCTGTGGACCCTGATGCCGAGTGCAAGTATGGCCTGTACTTCAGGGACGGCCGGCGCAAGGTGGACTACATCCTGGTGTACCATCACAAGAGGCCCTCGGGCAACCGGACCCTGGTCAGGAGGGTGCAGCACAGCGACACCCCCTCTGGGGCTCGCAGCGTCAAGCAGGACCACCCCCTGCCGGGCAAGGGGGCGTCGCTGGATGCAGGCTCGGGGGAGCCCCCGATGGACTACCACGAGGATGACAAGCGCTTCCGCAGGGAGGAGTACGAGGGCAACCTCCTGGAGGCGGGCCTGGAGCTGGAGCGGGACGAGGACACTAAAATCCACGGAGTCGGGTTTGTGAAAATCCATGCCCCCTGGAACGTGCTGTGCAGAGAGGCCGAGTTTCTGAAACTGAAGATGCCGACGAAGAAGATGTACCACATTAATGAGACCCGTGGCCTCCTGAAAAAAATCAACTCTGTGCTCCAGAAAATCACAGATCCCATCCAGCCCAAAGTGGCTGAGCACAGGCCCCAGACCATGAAGAGACTCTCCTATCCCTTCTCCCGGGAGAAGCAGCATCTATTTGACTTGTCTGATAAGGATTCCTTTTTCGACAGCAAAACCCGGAGCACGATTGTCTATGAGATCTTGAAGAGAACGACGTGTACAAAGGCCAAGTACAGCATGGGGCAAGGCGAGGGAAGAAAGAAGGACTCCGCCCTTCTAAGTAAAAGGCGGAAATGTGGGAAGTATGGCATCACGAGCCTGCTGGCCAATGGTGTGTACGCGGCTGCATACCCACTGCACGATGGAGACTACAACGGTGAAAACGTCGAGTTCAACGACAGAAAACTCCTGTACGAAGAGTGGGCACGCTATGGAGTTTTCTATAAGTACCAGCCCATCGACCTGGTCAGGAAGTATTTTGGGGAGAAGATCGGCCTGTACTTCGCCTGGCTGGGCGTGTACACCCAGATGCTCATCCCTGCCTCCATCGTGGGAATCATTGTCTTCCTGTACGGATGCGCCACCATGGATGAAAACATCCCCAGCATGGAGATGTGTGACCAGAGACACAATATCACCATGTGCCCGCTTTGCGACAAGACCTGCAGCTACTGGAAGATGAGCTCAGCCTGCGCCACGGCCCGCGCCAGCCACCTCTTCGACAACCCCGCCACGGTCTTCTTCTCTGTCTTCATGGCCCTCTGGGCTGCCACCTTCATGGAGCACTGGAAGCGGAAACAGATGCGACTCAACTACCGCTGGGACCTCACGGGCTTTGAAGAGGAAGAGGAGGCTGTCAAGGATCATCCTAGAGCTGAATACGAAGCCAGAGTCTTGGAGAAGTCTCTGAAGAAAGAGTCCAGAAACAAAGAGAAGCGCCGGCATATTCCAGAGGAGTCAACAAACAAATGGAAGCAGAGGGTTAAGACAGCCATGGCGGGGGTGAAATTGACTGACAAAGTGAAGCTGACATGGAGAGATCGGTTCCCAGCCTACCTCACTAACTTGGTCTCCATCATCTTCATGATTGCAGTGACGTTTGCCATCGTCCTCGGCGTCATCATCTACAGAATCTCCATGGCCGCCGCCTTGGCCATGAACTCCTCCCCCTCCGTGCGGTCCAACATCCGGGTCACAGTCACAGCCACCGCAGTCATCATCAACCTAGTGGTCATCATCCTCCTGGACGAGGTGTATGGCTGCATAGCCCGATGGCTCACCAAGATCGAGGTCCCAAAGACGGAGAAAAGCTTTGAGGAGAGGCTGATCTTCAAGGCTTTCCTGCTGAAGTTTGTGAATTCCTACACCCCCATCTTTTACGTGGCGTTCTTCAAAGGCCGGTTTGTTGGACGCCCGGGCGACTACGTGTACATTTTCCGTTCCTTCCGAATGGAAGAGTGTGCGCCAGGGGGCTGCCTGATGGAGCTATGCATCCAGCTCAGCATCATCATGCTGGGGAAACAGCTGATCCAGAACAACCTGTTCGAGATCGGCATCCCGAAGATGAAGAAGCTCATCCGCTACCTGAAGCTGAAGCAGCAGAGCCCCCCTGACCACGAGGAGTGTGTGAAGAGGAAACAGCGGTACGAGGTGGATTACAACCTGGAGCCCTTCGCGGGCCTCACCCCAGAGTACATGGAAATGATCATCCAGTTTGGCTTCGTCACCCTGTTTGTCGCCTCCTTCCCCCTGGCCCCACTGTTTGCGCTGCTGAACAACATCATCGAGATCCGCCTGGACGCCAAAAAGTTTGTCACTGAGCTCCGAAGGCCGGTAGCTGTCAGAGCCAAAGACATCGGAATCTGGTACAATATCCTCAGAGGCATTGGGAAGCTTGCTGTCATCATCAATGCCTTCGTGATCTCCTTCACGTCTGACTTCATCCCGCGCCTGGTGTACCTCTACATGTACAGTAAGAACGGGACCATGCACGGCTTCGTCAACCACACCCTCTCCTCCTTCAACGTCAGTGACTTCCAGAACGGCACGGCCCCCAATGACCCCCTGGACCTGGGCTACGAGGTGCAGATCTGCAGGTATAAAGACTACCGAGAGCCGCCGTGGTCGGAAAACAAGTACGACATCTCCAAGGACTTCTGGGCCGTCCTGGCAGCCCGGCTGGCGTTTGTCATCGTCTTCCAGAACCTGGTCATGTTCATGAGCGACTTTGTGGACTGGGTCATCCCGGACATCCCCAAGGACATCAGCCAGCAGATCCACAAGGAGAAGGTGCTCATGGTGGAGCTGTTCATGCGGGAGGAGCAAGACAAGCAGCAGCTGCTGGAAACCTGGATGGAGAAGGAGCGGCAGAAGGACGAGCCGCCGTGCAACCACCACAACACCAAAGCCTGCCCAGACAGCCTCGGCAGCCCAGCCCCCAGCCATGCCTACCACGGGGGCGTCCTGTAG GGHGSGSPSQPDADSHFEQLMVSMLEERDRLLDTLRETQETLALTQGKLHEVGHERDSLQRQLNTALPQEFAALTKELNVCREQLLEREEEIAELKAERNNTRLLLEHLECLVSRHERSLRMTVVKRQAQSPAGVSSEVEVLKALKSLFEHHKALDEKVRERLRVALERCSLLEEELGATHKELMILKEQNNQKKTLTDGVLDINHEQENTPSTSGKRSSDGSLSHEEDLAKVIELQEIISKQSREQSQMKERLASLSSHVTELEEDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNERLQLHLKERMAALEDKNSLLREVESAKKQLEETQHDKDQLVLNIEALRAELDHMRLRGASLHHGRPHLGSVPDFRFPMADGHTDSYSTSAVLRRPQKGRLAALRDEPSKVQTLNEQDWERAQQASVLANVAQAFESDADVSDGEDDRDTLLSSVDLLSPSGQADAHTLAMMLQEQLDAINKEIRLIQEEKENTEQRAEEIESRVGSGSLDNLGRFRSMSSIPPYPASSLASSSPPGSGRSTPRRIPHSPAREVDRLGVMTLPSDLRKHRRKLPPSREEVRDDKTTIKCETSPPSSPRALRLDRLHKGALHTVSHEDIRDIRNSTGSQDGPVSNPSSSNSSQDSLHKAPKKKGIKSSIGRLFGKKEKGRPGQTGKEALGQAGVSETDNSSQDALGLSKLGGQAEKNRKLQKKHELLEEARRQGLPFAQWDGPTVVVWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEIMSLTSPSAPPTSRTTTGNVWLTHEEMETLAATPQTEDEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRGQLKMVDSFHRNSFQCGIMCLRRLNYDRKELERKREESQSEIKEAAGAVDGEGAPPGGPSAQAATMRVNEKYSTLPAEDRSVHIINICAIEDIGYLPSEGTLLNSLSVDPDAECKYGLYFRDGRRKVDYILVYHHKRPSGNRTLVRRVQHSDTPSGARSVKQDHPLPGKGASLDAGSGEPPMDYHEDDKRFRREEYEGNLLEAGLELERDEDTKIHGVGFVKIHAPWNVLCREAEFLKLKMPTKKMYHINETRGLLKKINSVLQKITDPIQPKVAEHRPQTMKRLSYPFSREKQHLFDLSDKDSFFDSKTRSTIVYEILKRTTCTKAKYSMGQGEGRKKDSALLSKRRKCGKYGITSLLANGVYAAAYPLHDGDYNGENVEFNDRKLLYEEWARYGVFYKYQPIDLVRKYFGEKIGLYFAWLGVYTQMLIPASIVGIIVFLYGCATMDENIPSMEMCDQRHNITMCPLCDKTCSYWKMSSACATARASHLFDNPATVFFSVFMALWAATFMEHWKRKQMRLNYRWDLTGFEEEEEAVKDHPRAEYEARVLEKSLKKESRNKEKRRHIPEESTNKWKQRVKTAMAGVKLTDKVKLTWRDRFPAYLTNLVSIIFMIAVTFAIVLGVIIYRISMAAALAMNSSPSVRSNIRVTVTATAVIINLVVIILLDEVYGCIARWLTKIEVPKTEKSFEERLIFKAFLLKFVNSYTPIFYVAFFKGRFVGRPGDYVYIFRSFRMEECAPGGCLMELCIQLSIIMLGKQLIQNNLFEIGIPKMKKLIRYLKLKQQSPPDHEECVKRKQRYEVDYNLEPFAGLTPEYMEMIIQFGFVTLFVASFPLAPLFALLNNIIEIRLDAKKFVTELRRPVAVRAKDIGIWYNILRGIGKLAVIINAFVISFTSDFIPRLVYLYMYSKNGTMHGFVNHTLSSFNVSDFQNGTAPNDPLDLGYEVQICRYKDYREPPWSENKYDISKDFWAVLAARLAFVIVFQNLVMFMSDFVDWVIPDIPKDISQQIHKEKVLMVELFMREEQDKQQLLETWMEKERQKDEPPCNHHNTKACPDSLGSPAPSHAYHGGVL* FALSE TRUE hsa-mir-548k chr11:70283955-70284070:+ FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_cervix no_match TRUE Skin Cutaneous Melanoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Stomach adenocarcinoma,Stomach adenocarcinoma SKIN,CERVIX,STOMACH,STOMACH no_match 70118542|70118542,70118542,70118542|70118542,70118542|70117020 FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE 69933858|69949172,69962564,70016993|70026110,70007267|70007267 FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY,PARTIALLY,PARTIALLY In-frame,In-frame,Out-of-frame,In-frame TRUE Cervix CERVIX no_match 70272436|70272382|70272382 FALSE|FALSE|FALSE 70116458|70189069|70116458 FALSE|FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33604 BTG3::C21orf91 ENSG00000154640.15::ENSG00000154642.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2471 FALSE NA FALSE NA BTG3 ENSG00000154640.15 protein_coding - - chr21:17593653-17612945:- chr21:17598617:- chr21:18965971-18985263:- chr21:18970935:- C21orf91 ENSG00000154642.11 protein_coding - - chr21:17788974-17819386:- chr21:17795270:- chr21:19161291-19191703:- chr21:19167587:- chr21:17595580,chr21:17595582 chr21:17796280,chr21:17796283 NA NA chr21:18967898,chr21:18967900 chr21:19168597,chr21:19168600 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame BTG|1-105|4.7e-45 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr21:0.18Mb] 12 7 12 6.12 ONLY_REF_SPLICE YES_LDAS 0.1924 GT 1.9899 AG 1.9656 ENST00000339775.10 1-651 ENST00000284881.9 665-894 chr21|-|[2]17598617-17598824[2]|[1]17604145-17604276[2]|[1]17604860-17604997[2]|[1]17608972-17609144[0]<==>chr21|-|[2]17793415-17793581[1]|[0]17795208-17795270[1] atgaagaatgaaattgctgccgttgtcttctttttcacaaggctagttcgaaaacatgataagttgaaaaaagaggcagttgagaggtttgctgagaaattgaccctaatacttcaagaaaaatataaaaatcactggtatccagaaaaaccatcgaaaggacaggcctacagatgtattcgtgtcaataaatttcagagagttgatcctgatgtcctgaaagcctgtgaaaacagctgcatcttgtatagtgacctgggcttgccaaaggagctcactctctgggtggacccatgtgaggtgtgctgtcgtagagatggggtttcaccatgttggccagactgctctcaaactcctgacctcgtgatccgcccgccttggcctcccaaagcgctggattacaggcgtgagccactgcgcccggcctcctcctttttgattatgtatggagagaaaaacaatgcattcattgttgccagctttgaaaataaagatgagaacaaggatgagatctccaggaaagttaccagggcccttgataaggttacctctgattatcattcaggatcctcttcttcagatgaagaaacaagtaaggaaatggaagtgaaacccagttcggtgactgcagccgcaagtcctgtgtaccagTGAATTCGATGACTCTTGGTGAGGTAGAGCAACTGAATGCAAAGCTCCTACAGCAAATCCAGGAAGTTTTTGAAGAGTTAACTCACCAAGTGCAAGAAAAAGATTCTTTGGCCTCACAGCTCCATGTCCGCCACGTTGCCATCGAACAGCTTCTGAAGAACTGTTCTAAGTTACCATGTCTGCAAGTAGGGCGAACAGGAATGAAGTCGCACCTACCCATAAACAACTGA MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLGLPKELTLWVDPCEVCCRRDGVSPCWPDCSQTPDLVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASPVYQ*IR*LLVR*SN*MQSSYSKSRKFLKS*LTKCKKKILWPHSSMSATLPSNSF*RTVLSYHVCK*GEQE*SRTYP*TT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33605 FNIP2::RXFP1 ENSG00000052795.13::ENSG00000171509.16 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2477 FALSE NA FALSE NA FNIP2 ENSG00000052795.13 protein_coding + + chr4:158769026-158908050:+ chr4:158870469:+ chr4:159690178-159829202:+ chr4:159791621:+ RXFP1 ENSG00000171509.16 protein_coding + + chr4:158315311-158653372:+ chr4:158651757:+ chr4:159236463-159574524:+ chr4:159572909:+ chr4:158874233,chr4:158874218 chr4:158651460,chr4:158651442 NA NA chr4:159795385,chr4:159795370 chr4:159572612,chr4:159572594 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame FNIP_N|46-167|1.1e-37^DUF1645|51-116|0.00041^DUF1645|207-272|0.031^FNIP_N|255-292|0.29^FNIP_M|298-531|8.5e-90^FNIP_C|927-1110|6.6e-81 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.12Mb] 11 5 11 5 ONLY_REF_SPLICE YES_LDAS 0.1699 GT 1.8892 AG 1.8256 ENST00000264433.11 1-2949 ENST00000343542.9 1832-2130 chr4|+|[0]158769213-158769319[1]|[2]158825916-158826042[2]|[0]158829079-158829225[2]|[0]158831861-158831961[1]|[2]158832067-158832138[1]|[2]158833528-158833628[0]|[1]158835405-158835476[0]|[1]158851321-158851450[1]|[2]158859057-158859258[2]|[0]158859578-158859666[1]|[2]158861342-158861488[1]|[2]158861607-158861776[0]|[1]158868102-158869428[1]|[2]158870313-158870469[2]<==>chr4|+|[1]158651757-158652055[2] atggccccgaccctgctccagaagctcttcaacaaaaggggcagcagcggcagctccgcggcggcgtctgcccagggcagggctcctaaggaaggacccgcctttagttggtcatgttcggagtttgacctgaatgagattcgcctgatagtttaccaggactgtgacaggagaggcagacaagtcttgtttgactctaaagctgttcaaaagattgaggaggtgacagctcagaaaacagaggatgttcctattaaaatatcagccaagtgctgccagggaagcagcagtgtcagcagcagtagcagcagcagcatctcttcccacagttcttctgggggatcttcacatcatgctaaggaacagcttccaaagtaccagtacacaagaccagcttccgatgtcaacatgttaggggaaatgatgtttggctcagttgccatgagttacaaaggctccaccttaaagatacactacatacgttctcctccacaactgatgattagtaaagtcttctctgctagaatgggcagcttctgtggaagtacaaataacttgcaagacagctttgagtacatcaaccaagatcctaatttgggaaaactgaacacaaatcaaaatagtttgggtccttgtcgtactggaagtaacctagcacacagcacaccagttgatatgccaagcagaggacagaatgaagacagggacagtggcattgctcgatcagcctcactaagcagtcttttgatcacacctttcccatctccaagctcctctacatcttcttccagcagttaccagcgccgctggcttcgaagtcagacaacaagtttggaaaatggcatcatcccaagaaggtcaactgatgagacattcagcttggctgaagaaacctgtagctctaatccagctatggttaggaggaagaaaattgccataagcatcatcttttccctatgtgagaaagaagaagcacaaaggaatttccaggacttcttcttttctcattttcccctgtttgaatctcacatgaacaggctgaagagtgcaattgaaaaggctatgatctcctgtaggaaaatagcagaatcaagtctccgagtccagttttatgtcagccgtttgatggaagctctgggagaattcagaggaactatctggaacttatattctgttccaaggatagctgaacctgtatggcttactatgatgtccggcactttggaaaaaaaccagctctgccagcgctttctcaaggagtttacacttctgatagaacagataaataaaaaccagttttttgctgccttactgactgcggtgttaacctaccacctggcctgggtcccaactgtcatgcctgtggatcaccctcccatcaaagccttctcagagaaacgtacctcccagtcagtgaacatgctggccaaaacacatccgtataatcctctttgggcacagctgggtgatctttacggagccataggctctccagtgagactgactcgcaccgtagtggtagggaagcagaaggacttagtccagcgaatactttatgtcctgacctactttctccgttgctctgagctacaagagaaccagctgacctggagtggcaatcatggtgaaggtgaccaagttttaaatgggagcaagatcataacagccttggagaaaggagaggtggaggagtctgagtatgtggtcattacggtgaggaacgagcccgctcttgtaccccccatcctaccaccaacagcagcagagagacacaacccctggccgacagggtttcctgagtgcccagagggcactgacagtagagacctgggtcttaaacctgacaaagaagctaacaggaggccagagcagggttctgaggcttgcagcgcagggtgcctggggccagcatcagacgcttcctggaaacctcagaatgcattttgtggggatgagaaaaataaagaggcaccgcaagatggctcttcaagacttcccagctgtgaagttttgggggcaggaatgaagatggaccagcaagctgtctgtgagctgttgaaagtggagatgcctacaagactgccagaccggtcagtggcctggccttgccctgacagacatctccgggagaaaccttccttagaaaaggtcactttccagattggaagctttgcatctccagagtctgactttgaaagccgcatgaaaaaaatggaggaacgggtgaaggcctgtggcccctccttggaggccagtgaggctgctgatgtggctcaggacccgcaggtttctaggagcccttttaaacctggctttcaggagaatgtttgctgtcctcagaatcggctttcagagggggatgaaggcgagtctgacaagggttttgcagaggacagaggcagcagaaacgacatggcagcagatattgctgggcagctcagccacgctgctgacttgggcacagcctcccacggtgcaggaggaacgggagggaggaggctggaggccactagaggtttgtatgtgaaggctgcggaaggacctgtgctggagcctgttgcccccaggtgtgtccagcggggccctggcctcgtggctggtgcgaatatcccctgtggggatgacaacaagaaggccaacttcaggactgaaggagacattccccgaaatgaaagctcagatagcgccctgggagacagtgacgacgaagcctgcgcttcagccatgctagatctgggtcacggtggtgacaggactggagggtccttggaagtggagctgcctctgccaaggtctcagagcatcagcacccagaatgtaaggaactttggccgctcacttctggcgggctactgccccacatacatgcctgatcttgtgcttcatgggaccggcagtgatgagaagctgaagcagtgcctggtggccgaccttgtccacacagtccatGTACCATAACCTCTTGGGTAGTGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATACTCTGACCACAAGACCATTTAAAGAAATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGACAGCAAAGGTCAGAAAACATATGCTCCATCATTCATCTGGGTGGAAATGTGGCCACTGCAGGAGATGCCACCTGAGTTAATGAAGCCGGACCTTTTCACATACCCCTGTGAAATGTCACTGATTTCTCAATCAACGAGACTCAATTCCTATTCATGA MAPTLLQKLFNKRGSSGSSAAASAQGRAPKEGPAFSWSCSEFDLNEIRLIVYQDCDRRGRQVLFDSKAVQKIEEVTAQKTEDVPIKISAKCCQGSSSVSSSSSSSISSHSSSGGSSHHAKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARMGSFCGSTNNLQDSFEYINQDPNLGKLNTNQNSLGPCRTGSNLAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIIPRRSTDETFSLAEETCSSNPAMVRRKKIAISIIFSLCEKEEAQRNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSGTLEKNQLCQRFLKEFTLLIEQINKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNMLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVVGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNHGEGDQVLNGSKIITALEKGEVEESEYVVITVRNEPALVPPILPPTAAERHNPWPTGFPECPEGTDSRDLGLKPDKEANRRPEQGSEACSAGCLGPASDASWKPQNAFCGDEKNKEAPQDGSSRLPSCEVLGAGMKMDQQAVCELLKVEMPTRLPDRSVAWPCPDRHLREKPSLEKVTFQIGSFASPESDFESRMKKMEERVKACGPSLEASEAADVAQDPQVSRSPFKPGFQENVCCPQNRLSEGDEGESDKGFAEDRGSRNDMAADIAGQLSHAADLGTASHGAGGTGGRRLEATRGLYVKAAEGPVLEPVAPRCVQRGPGLVAGANIPCGDDNKKANFRTEGDIPRNESSDSALGDSDDEACASAMLDLGHGGDRTGGSLEVELPLPRSQSISTQNVRNFGRSLLAGYCPTYMPDLVLHGTGSDEKLKQCLVADLVHTVHVP*PLG**FLFCPLTVL*TQFSIL*PQDHLKK*FIGFGITTDKENLWTAKVRKHMLHHSSGWKCGHCRRCHLS**SRTFSHTPVKCH*FLNQRDSIPIH FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Uterus_corpus no_match TRUE Uterine Carcinosarcoma UTERUS no_match 159690471 FALSE 159559160 FALSE YES In-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33606 AP5B1::CASC8 ENSG00000254470.3::ENSG00000246228.7 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4512 TRUE 1712 AP5B1 ENSG00000254470.3 protein_coding - - chr11:65773898-65780976:- chr11:65780442:- chr11:65541369-65548447:- chr11:65547913:- CASC8 ENSG00000246228.7 lncRNA - - chr8:127289808-127482139:- chr8:127323154:- chr8:128302053-128494384:- chr8:128335399:- chr11:65780247,chr11:65780251 chr8:127385968,chr8:127385969 NA NA chr11:65547718,chr11:65547722 chr8:128398213,chr8:128398214 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr11--chr8] 10 20 10 3.11 ONLY_REF_SPLICE YES_LDAS 0.1392 GT 1.5301 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33607 TRAPPC9::VSTM4 ENSG00000167632.18::ENSG00000165633.13 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2481 FALSE NA FALSE NA TRAPPC9 ENSG00000167632.18 protein_coding - - chr8:139727725-140458579:- chr8:140221459:- chr8:140739968-141468678:- chr8:141231558:- VSTM4 ENSG00000165633.13 protein_coding - - chr10:49014236-49115522:- chr10:49019775:- chr10:50222281-50323567:- chr10:50227820:- chr8:140039680,chr8:140039682 chr10:49046680,chr10:49046679 NA NA chr8:141049777,chr8:141049779 chr10:50254725,chr10:50254724 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TRAPPC9-Trs120|60-144|4.6e-05^TRAPPC9-Trs120|186-260|1.9e-19^PMBR|318-339|8.7e-05^Vps23_core|328-356|1.8e-05^TRAPPC9-Trs120|360-669|2.6e-23^TRAPPC9-Trs120|871-1100|1.4e-09 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr8--chr10] 9 1 9 1 ONLY_REF_SPLICE YES_LDAS 0.1062 GT 1.9329 AG 1.9656 ENST00000648948.2 1-2556 ENST00000332853.9 838-963 chr8|-|[2]140221459-140221583[1]|[0]140252777-140252929[1]|[0]140275658-140275821[2]|[1]140283889-140284021[1]|[0]140287608-140287734[0]|[2]140290993-140291078[1]|[0]140300469-140300614[2]|[1]140311248-140311374[1]|[0]140360050-140360193[1]|[0]140370964-140371180[0]|[2]140397620-140397745[0]|[2]140405577-140405698[1]|[0]140426615-140426641[1]|[0]140435112-140435240[1]|[0]140439052-140439197[2]|[1]140450790-140451373[0]<==>chr10|-|[2]49019650-49019775[0] atgagcgtccctgactacatgcagtgtgctgaggaccaccagacgctgctcgtggtggtccagcctgtgggcatcgtctccgaggagaacttcttcaggatctataagaggatttgctctgtgagtcagatcagcgtgcgggactcccagcgagtcctctacatccgctacaggcaccactacccacccgagaacaacgagtggggtgacttccagacccaccgcaaagtcgtgggcctcatcaccatcacagactgcttctcggccaaggactggccacagacctttgagaagttccacgtgcagaaggagatctacggctccacactgtatgactcccggctctttgtcttcgggctgcagggggagatcgtggagcagccgcgcaccgacgtggctttctaccccaactacgaggactgccagacggtggagaagagaatcgaggacttcatcgagtcactgttcatcgtgctggagtccaagcgtctggacagagccacagacaagtctggggataagatcccccttctctgtgtcccgtttgagaaaaaggactttgtaggactggacacagacagcagacattacaagaagcggtgccaaggccgcatgcggaagcacgtgggggacctgtgcctgcaggcagggatgctgcaggactccctggtgcattaccacatgtcggtggagctgctgcgttctgtgaatgactttctgtggcttggagctgccctggaaggattgtgttcagcttctgtcatctatcactatcctggtggaactggtgggaagagtggagctcggaggttccagggcagcacccttcctgctgaagcagccaatagacaccggccaggggcacaggaagttctcattgatccaggtgccctcaccaccaatggcatcaaccctgacaccagtactgagatcggacgtgctaagaactgccttagccctgaagacataattgacaagtataaagaggcgatttcctattacagcaagtataagaatgcgggagtgattgagttggaagcgtgcatcaaggctgtacgtgtccttgcaattcagaaacggagcatggaagcatcagaatttcttcagaatgcagtttacattaaccttcgacagctttctgaggaagagaaaattcagcgctacagcatcctctccgagctctatgagctgatcggcttccatcgcaagtctgcgttcttcaagcgcgtggccgccatgcagtgcgtggccccaagcatcgcggagcctgggtggagggcctgctacaaactcctcctggaaacgctgcccggctacagtctgtcgctggatcccaaagatttcagcagaggcacgcacagaggctgggctgcggtccagatgcgtttgctccatgaattggtctacgcctcccgaaggatggggaaccctgccctctctgtcagacacctgtccttccttctacagaccatgctggacttcttgtcggatcaggaaaagaaagatgtggcccaaagcctagagaactatacgtccaagtgtcctgggaccatggagcccatcgccctccctggcggcctcaccctgccaccggtgcccttcaccaagcttcccatcgtcaggcatgtgaaactattgaaccttcctgctagcctccggccacacaaaatgaaaagcttgctgggtcagaacgtgtcaaccaaaagtcctttcatctattcaccaattatcgcacacaaccgtggagaagagcggaacaagaaaatagatttccagtgggttcaaggagatgtgtgtgaagttcagctgatggtatataacccaatgccgtttgaacttcgagttgaaaacatggggctgctcaccagcggagtggagttcgagtctctccctgcggcgctttctcttccggctgaatctggtctgtacccagtgacgctcgtcggggtcccgcagacgactggaacgattactgtgaacggttaccataccacggtcttcggtgtgttcagtgactgtttgctggataacctgccgggaataaaaaccagtggctccacagtggaagtcattcccgcgttgccaagactgcagatcagcacctctctgcccagatctgcacattcattgcaaccttcttctggtgatgaaatatctactaatgtatctgtccagctttacaatggagaaagtcagcaactaatcattaaattggaaaatattggaatggaaccattggagaaactggaggtcacctcgaaagttctcaccactaaagaaaaattgtatggcgacttcttgagctggaagctagaggaaacccttgcccagttccctttgcagcctgggaaggtggccacgttcacaatcaacatcaaagtgaagctggatttctcctgccaggagaatctcctgcaggatctcagtgatgatggaatcagtgtgagtggctttcccctgtccagtccttttcggcaggtcgttcggccccgagtggagggcaaacctgtgaacccacccgagagcaacaaagcaggcgactacagccacgtgaagCCAAAGATTGCTGAGGAAAACTTAACCTATGCCGAACTGGAGCTGATCAAACCCCACCGGGCTGCCAAAGGCGCCCCCACCAGCACTGTCTACGCCCAGATCCTCTTCGAGGAGAACAAGCTGTAG MSVPDYMQCAEDHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSAKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQTVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFSRGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKCPGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKPKIAEENLTYAELELIKPHRAAKGAPTSTVYAQILFEENKL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33610 ING1::COL4A2 ENSG00000153487.13::ENSG00000134871.19 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2475 FALSE NA FALSE NA ING1 ENSG00000153487.13 protein_coding + + chr13:110712736-110723339:+ chr13:110714285:+ chr13:111365083-111375686:+ chr13:111366632:+ COL4A2 ENSG00000134871.19 protein_coding + + chr13:110305812-110513209:+ chr13:110424734:+ chr13:110958159-111165556:+ chr13:111077081:+ chr13:110715345,chr13:110715343 chr13:110360157,chr13:110360152 NA NA chr13:111367692,chr13:111367690 chr13:111012504,chr13:111012499 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SRP-alpha_N-PARTIAL|11-136~|2.3e-07^ING|15-113|3.1e-33^zf-C4pol|33-62|0.96^MAS20|38-79|1.4^ALMT-PARTIAL|39-136~|0.0043^CIS_TMP-PARTIAL|41-136~|0.00039^zf-RING-like|53-61|7^DDHD-PARTIAL|81-136~|0.00083^RR_TM4-6-PARTIAL|95-136~|0.0091^CDC45-PARTIAL|109-136~|0.0013^Dsh_C-PARTIAL|125-136~|0.00029^Zip-PARTIAL|134-136~|0.0023^Presenilin-PARTIAL|135-136~|0.0037^PBP1_TM-PARTIAL|135-136~|0.02 Collagen|184-232|7.7e-11^Collagen|237-252|0.00016^Collagen|276-314|4.5e-07^Collagen|293-347|7.7e-13^Collagen|375-418|0.0029^Collagen|423-482|4.9e-12^Collagen|494-549|5.1e-14^Collagen|568-619|4.1e-05^Collagen|684-738|1.8e-11^Collagen|723-775|2.7e-11^Collagen|780-837|8.5e-13^Collagen|815-867|2.2e-09^Collagen|869-924|3.5e-11^Collagen|920-978|9e-13^Collagen|990-1043|7.6e-11^Collagen|1033-1088|6.7e-13^Collagen|1101-1159|5.8e-13^Collagen|1155-1211|1.8e-11^Collagen|1182-1233|1.9e-10^Collagen|1242-1274|1.4e-06^Collagen|1278-1336|7.1e-12^Collagen|1332-1389|2e-12^Collagen|1401-1448|6e-10^Collagen|1432-1484|2.8e-09^C4|1491-1594|5e-43^C4|1599-1710|1.5e-46 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.20Mb] 9 10 9 9.89 ONLY_REF_SPLICE YES_LDAS 0.2006 GT 1.7465 AG 1.8323 ENST00000333219.9 1-136 ENST00000360467.7 181-5139 chr13|+|[0]110714150-110714285[0]<==>chr13|+|[0]110424734-110424868[2]|[0]110424953-110424997[2]|[0]110428467-110428583[2]|[0]110429885-110429956[2]|[0]110430401-110430436[2]|[0]110430545-110430607[2]|[0]110432325-110432360[2]|[0]110434401-110434442[2]|[0]110436269-110436367[2]|[0]110438002-110438037[2]|[0]110438618-110438668[2]|[0]110439789-110439833[2]|[0]110445829-110445882[2]|[0]110446798-110446864[0]|[1]110449679-110449789[0]|[1]110450305-110450454[0]|[1]110457343-110457435[0]|[1]110458771-110458934[2]|[0]110462114-110462186[0]|[1]110462278-110462384[2]|[0]110465405-110465606[0]|[1]110466003-110466062[0]|[1]110467040-110467096[0]|[1]110469217-110469324[0]|[1]110472929-110473150[0]|[1]110478003-110478164[0]|[1]110480220-110480390[0]|[1]110482516-110482659[0]|[1]110484905-110485027[0]|[1]110485655-110485836[2]|[0]110489445-110489508[0]|[1]110489711-110489785[0]|[1]110491233-110491340[0]|[1]110492070-110492177[0]|[1]110493211-110493282[0]|[1]110495342-110495467[0]|[1]110501668-110501784[0]|[1]110503121-110503282[0]|[1]110503383-110503481[0]|[1]110503847-110503993[0]|[1]110504148-110504264[0]|[1]110506415-110506606[0]|[1]110507935-110508221[2]|[0]110511934-110512191[2] atgttgagtcctgccaacggggagcagctccacctggtgaactatgtggaggactacctggactccatcgagtccctgcctttcgacttgcagagaaatgtctcgctgatgcgggagatcgacgcgaaataccaagGGTCAGCCTGGGCCAGTGGGCCCCCAGGGGTACAATGGGCCACCAGGATTACAAGGATTCCCGGGACTGCAGGGACGTAAAGGAGACAAGGGTGAAAGGGGAGCCCCCGGAGTAACGGGACCCAAGGGCGACGTGGGAGCAAGAGGCGTTTCTGGATTCCCTGGTGCCGATGGAATTCCTGGACACCCGGGGCAAGGTGGGCCCAGGGGAAGGCCGGGCTACGATGGCTGCAACGGAACCCAGGGAGACTCAGGTCCACAGGGGCCCCCCGGCTCTGAGGGGTTCACCGGGCCTCCCGGGCCCCAAGGACCAAAAGGGCAGAAAGGTGAGCCTTATGCACTGCCTAAAGAGGAGCGCGACAGATATCGGGGTGAACCTGGAGAGCCTGGATTGGTCGGTTTCCAGGGACCTCCCGGCCGCCCTGGGCATGTGGGACAGATGGGTCCAGTTGGAGCTCCAGGGAGACCAGGACCACCTGGACCCCCTGGACCAAAAGGACAGCAAGGCAACAGAGGACTTGGTTTCTACGGAGTTAAGGGTGAAAAGGGTGACGTAGGGCAGCCGGGACCCAACGGGATTCCATCAGACACCCTCCACCCCATCATCGCGCCCACAGGAGTCACCTTCCACCCAGATCAGTACAAGGGTGAAAAAGGCAGTGAGGGGGAACCAGGAATAAGAGGCATTTCCTTGAAGGGAGAAGAAGGAATCATGGGCTTTCCTGGACTGAGGGGTTACCCTGGCTTGAGTGGTGAAAAAGGATCACCAGGACAGAAGGGAAGCCGAGGCCTGGATGGCTATCAAGGGCCTGATGGACCCCGGGGACCCAAGGGAGAAGCCGGAGACCCAGGGCCCCCTGGACTACCTGCCTACTCCCCTCACCCTTCCCTAGCAAAAGGTGCCAGAGGTGACCCGGGATTCCCAGGGGCCCAAGGGGAGCCAGGAAGCCAGGGTGAGCCAGGAGACCCGGGCCTCCCAGGTCCCCCTGGCCTCTCCATCGGAGATGGAGATCAGAGGAGAGGCCTGCCGGGTGAGATGGGACCCAAGGGCTTCATCGGAGACCCCGGCATCCCTGCGCTCTACGGGGGCCCACCTGGACCTGATGGAAAGCGAGGGCCTCCAGGACCCCCCGGGCTCCCTGGACCACCTGGACCTGATGGCTTCCTGTTTGGGCTGAAAGGAGCAAAAGGAAGAGCAGGCTTCCCTGGGCTTCCCGGCTCCCCTGGAGCCCGCGGACCAAAGGGGTGGAAAGGTGACGCTGGGGAATGCAGATGTACAGAAGGCGACGAAGCTATCAAAGGTCTTCCGGGACTGCCAGGACCCAAGGGCTTCGCAGGCATCAACGGGGAGCCGGGGAGGAAAGGGGACAGAGGAGACCCCGGCCAACACGGCCTCCCTGGGTTCCCAGGGCTCAAGGGAGTGCCTGGCAACATTGGTGCTCCCGGACCCAAAGGAGCAAAAGGAGATTCCAGAACAATCACAACCAAAGGTGAGCGGGGACAGCCCGGCGTCCCAGGTGTGCCCGGGATGAAAGGTGACGATGGCAGCCCAGGCCGCGATGGGCTCGATGGATTCCCCGGCCTCCCAGGCCCTCCCGGTGATGGCATCAAGGGCCCTCCAGGGGACCCAGGCTATCCAGGAATACCTGGAACGAAGGGTACTCCAGGAGAAATGGGCCCCCCAGGACTGGGCCTTCCCGGCCTCAAAGGCCAACGTGGTTTCCCTGGAGACGCCGGCTTACCTGGACCACCAGGCTTCCTGGGCCCTCCTGGCCCCGCAGGGACCCCAGGACAAATAGATTGTGACACAGATGTGAAAAGGGCCGTTGGAGGTGACAGACAGGAGGCCATCCAGCCAGGTTGCATAGGAGGGCCCAAGGGATTGCCAGGCCTGCCAGGACCCCCAGGCCCCACAGGTGCCAAAGGCCTCCGAGGAATCCCAGGCTTCGCAGGAGCTGATGGAGGACCAGGGCCCAGGGGCTTGCCAGGAGACGCAGGTCGTGAAGGGTTCCCAGGACCCCCAGGGTTCATAGGACCCCGAGGATCCAAAGGTGCAGTGGGCCTCCCTGGCCCAGATGGATCCCCAGGTCCCATCGGCCTGCCAGGGCCAGATGGGCCCCCTGGGGAAAGGGGCCTCCCTGGAGAAGTCCTGGGAGCTCAGCCCGGGCCACGGGGAGATGCTGGTGTGCCTGGACAGCCTGGGCTTAAAGGCCTTCCCGGAGACAGAGGCCCCCCTGGATTCAGAGGAAGCCAAGGGATGCCTGGGATGCCAGGGCTGAAGGGCCAGCCAGGCCTCCCAGGACCTTCCGGCCAGCCAGGCCTGTATGGGCCTCCAGGACTGCATGGATTCCCAGGAGCTCCTGGCCAAGAGGGGCCCTTGGGGCTGCCAGGAATCCCAGGCCGTGAAGGTCTGCCTGGTGATAGAGGGGACCCTGGGGACACAGGCGCTCCTGGCCCTGTGGGCATGAAAGGTCTCTCTGGTGACAGAGGAGATGCTGGCTTCACAGGGGAGCAAGGCCATCCAGGAAGCCCTGGATTTAAAGGAATTGATGGAATGCCTGGGACCCCCGGGCTAAAAGGAGATAGAGGCTCACCTGGGATGGATGGTTTCCAAGGCATGCCTGGACTCAAAGGGAGACCCGGGTTTCCAGGGAGCAAAGGCGAGGCTGGATTTTTCGGAATACCCGGTCTGAAGGGTCTGGCTGGTGAGCCAGGTTTTAAAGGCAGCCGAGGGGACCCTGGGCCCCCAGGACCACCTCCTGTCATCCTGCCAGGAATGAAAGACATTAAAGGAGAGAAAGGAGATGAAGGGCCTATGGGGCTGAAAGGATACCTGGGCGCAAAAGGTATCCAAGGAATGCCAGGCATCCCAGGGCTGTCAGGAATCCCTGGGCTGCCTGGGAGGCCCGGCCACATCAAAGGAGTCAAGGGAGACATCGGAGTCCCCGGCATCCCCGGTTTGCCAGGATTCCCTGGGGTGGCTGGCCCCCCTGGAATTACGGGATTCCCAGGATTCATAGGAAGCCGGGGTGACAAAGGTGCCCCAGGGAGAGCAGGCCTGTATGGCGAGATTGGCGCGACTGGTGATTTCGGTGACATCGGGGACACTATAAATTTACCAGGAAGACCAGGCCTGAAGGGGGAGCGGGGCACCACTGGAATACCAGGTCTGAAGGGATTCTTTGGAGAGAAGGGAACAGAAGGTGACATCGGCTTCCCTGGGATAACAGGCGTGACTGGAGTCCAAGGCCCTCCTGGACTTAAAGGACAAACAGGCTTTCCAGGGCTGACTGGGCCTCCAGGGTCGCAGGGAGAGCTGGGGCGGATTGGACTGCCTGGTGGCAAAGGAGATGATGGCTGGCCGGGAGCTCCGGGCTTACCAGGTTTTCCGGGACTCCGTGGGATCCGCGGCTTACACGGCTTGCCAGGCACCAAGGGCTTTCCAGGATCCCCAGGTTCTGACATCCACGGAGACCCAGGCTTCCCAGGCCCTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTTCCAGGCCCTGTGGGAGTCCCAGGACAGAAAGGAGACCAAGGAGCTCCAGGGGAACGAGGCCCACCTGGGAGCCCAGGACTTCAGGGGTTCCCTGGTATCACACCCCCTTCCAACATCTCTGGGGCACCTGGTGACAAAGGGGCGCCAGGGATATTTGGCCTGAAAGGTTATCGGGGCCCACCAGGGCCACCAGGTTCTGCTGCTCTTCCTGGAAGCAAAGGTGACACAGGGAACCCAGGAGCTCCAGGAACCCCAGGGACCAAAGGATGGGCCGGGGACTCCGGGCCCCAGGGCAGGCCTGGTGTGTTTGGTCTCCCAGGAGAAAAAGGGCCCAGGGGTGAACAAGGCTTCATGGGGAACACTGGACCCACTGGGGCGGTGGGCGACAGAGGCCCCAAGGGACCCAAGGGAGACCCAGGATTCCCTGGTGCCCCCGGGACTGTGGGAGCCCCCGGGATTGCAGGAATCCCCCAGAAGATTGCCGTCCAACCAGGGACAGTGGGTCCCCAGGGGAGGCGAGGCCCCCCTGGGGCACCGGGGGAGATGGGGCCCCAGGGCCCCCCCGGAGAACCAGGTTTCCGTGGGGCTCCAGGGAAAGCTGGGCCCCAAGGAAGAGGTGGTGTGTCTGCTGTTCCCGGCTTCCGGGGAGATGAAGGACCCATAGGCCACCAGGGGCCGATTGGCCAAGAAGGTGCACCAGGCCGTCCAGGGAGCCCGGGCCTGCCGGGTATGCCAGGCCGCAGCGTCAGCATCGGCTACCTCCTGGTGAAGCACAGCCAGACGGACCAGGAGCCCATGTGCCCAGTGGGCATGAACAAACTCTGGAGTGGATACAGCCTGCTGTACTTCGAGGGCCAGGAGAAGGCGCACAACCAGGACCTGGGGCTGGCGGGCTCCTGCCTGGCGCGGTTCAGCACCATGCCCTTCCTGTACTGCAACCCTGGTGATGTCTGCTACTATGCCAGCCGGAACGACAAGTCCTACTGGCTCTCTACCACTGCGCCGCTGCCCATGATGCCCGTGGCCGAGGACGAGATCAAGCCCTACATCAGCCGCTGTTCTGTGTGTGAGGCCCCGGCCATCGCCATCGCGGTCCACAGTCAGGATGTCTCCATCCCACACTGCCCAGCTGGGTGGCGGAGTTTGTGGATCGGATATTCCTTCCTCATGCACACGGCGGCGGGAGACGAAGGCGGTGGCCAATCACTGGTGTCACCGGGCAGCTGTCTAGAGGACTTCCGCGCCACACCATTCATCGAATGCAATGGAGGCCGCGGCACCTGCCACTACTACGCCAACAAGTACAGCTTCTGGCTGACCACCATTCCCGAGCAGAGCTTCCAGGGCTCGCCCTCCGCCGACACGCTCAAGGCCGGCCTCATCCGCACACACATCAGCCGCTGCCAGGTGTGCATGAAGAACCTGTGA MLSPANGEQLHLVNYVEDYLDSIESLPFDLQRNVSLMREIDAKYQGSAWASGPPGVQWATRITRIPGTAGT*RRQG*KGSPRSNGTQGRRGSKRRFWIPWCRWNSWTPGARWAQGKAGLRWLQRNPGRLRSTGAPRL*GVHRASRAPRTKRAER*ALCTA*RGARQISG*TWRAWIGRFPGTSRPPWACGTDGSSWSSRETRTTWTPWTKRTARQQRTWFLRS*G*KG*RRAAGTQRDSIRHPPPHHRAHRSHLPPRSVQG*KRQ*GGTRNKRHFLEGRRRNHGLSWTEGLPWLEW*KRITRTEGKPRPGWLSRA*WTPGTQGRSRRPRAPWTTCLLPSPFPSKRCQR*PGIPRGPRGARKPG*ARRPGPPRSPWPLHRRWRSEERPAG*DGTQGLHRRPRHPCALRGPTWT*WKARASRTPRAPWTTWT*WLPVWAERSKRKSRLPWASRLPWSPRTKGVER*RWGMQMYRRRRSYQRSSGTARTQGLRRHQRGAGEERGQRRPRPTRPPWVPRAQGSAWQHWCSRTQRSKRRFQNNHNQR*AGTARRPRCARDER*RWQPRPRWARWIPRPPRPSR*WHQGPSRGPRLSRNTWNEGYSRRNGPPRTGPSRPQRPTWFPWRRRLTWTTRLPGPSWPRRDPRTNRL*HRCEKGRWR*QTGGHPARLHRRAQGIARPARTPRPHRCQRPPRNPRLRRS*WRTRAQGLARRRRS*RVPRTPRVHRTPRIQRCSGPPWPRWIPRSHRPARARWAPWGKGPPWRSPGSSARATGRCWCAWTAWA*RPSRRQRPPWIQRKPRDAWDARAEGPARPPRTFRPARPVWASRTAWIPRSSWPRGALGAARNPRP*RSAW**RGPWGHRRSWPCGHERSLW*QRRCWLHRGARPSRKPWI*RN*WNAWDPRAKRR*RLTWDGWFPRHAWTQRETRVSREQRRGWIFRNTRSEGSGW*ARF*RQPRGPWAPRTTSCHPARNERH*RRERR*RAYGAERIPGRKRYPRNARHPRAVRNPWAAWEARPHQRSQGRHRSPRHPRFARIPWGGWPPWNYGIPRIHRKPG*QRCPRESRPVWRDWRDW*FR*HRGHYKFTRKTRPEGGAGHHWNTRSEGILWREGNRR*HRLPWDNRRDWSPRPSWT*RTNRLSRADWASRVAGRAGADWTAWWQRR*WLAGSSGLTRFSGTPWDPRLTRLARHQGLSRIPRF*HPRRPRLPRPSWGKR*PRRGQHPSRPCGSPRTERRPRSSRGTRPTWEPRTSGVPWYHTPFQHLWGTW*QRGARDIWPERLSGPTRATRFCCSSWKQR*HREPRSSRNPRDQRMGRGLRAPGQAWCVWSPRRKRAQG*TRLHGEHWTHWGGGRQRPQGTQGRPRIPWCPRDCGSPRDCRNPPEDCRPTRDSGSPGEARPPWGTGGDGAPGPPRRTRFPWGSRESWAPRKRWCVCCSRLPGR*RTHRPPGADWPRRCTRPSREPGPAGYARPQRQHRLPPGEAQPDGPGAHVPSGHEQTLEWIQPAVLRGPGEGAQPGPGAGGLLPGAVQHHALPVLQPW*CLLLCQPERQVLLALYHCAAAHDARGRGRDQALHQPLFCV*GPGHRHRGPQSGCLHPTLPSWVAEFVDRIFLPHAHGGGRRRRWPITGVTGQLSRGLPRHTIHRMQWRPRHLPLLRQQVQLLADHHSRAELPGLALRRHAQGRPHPHTHQPLPGVHEEPV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33611 GPN1::PPM1G ENSG00000198522.14::ENSG00000115241.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA GPN1 ENSG00000198522.14 protein_coding + + chr2:27628247-27651511:+ chr2:27632670:+ chr2:27851114-27874378:+ chr2:27855537:+ PPM1G ENSG00000115241.11 protein_coding - - chr2:27381195-27409591:- chr2:27387158:- chr2:27604062-27632458:- chr2:27610025:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame AAA_5|3-22|2.8^TsaE|20-60|0.00036^Mg_chelatase|20-57|0.00099^NB-ARC|29-55|0.00047^Zeta_toxin|30-58|0.0018^AAA_16|32-78|1.3e-06^G-alpha|33-60|0.00042^APS_kinase|33-69|0.00049^Arf|34-65|0.00057^AAA_24|34-144|2.3e-06^SRP54|34-70|4.4e-05^AAA_22|34-103|1.8e-05^FtsK_SpoIIIE|34-63|0.00032^Rad17|35-169|0.00043^nSTAND3|35-67|0.00058^AAA_19|35-61|0.00071^GTP_EFTU|36-275|1.9e-09^RsgA_GTPase|36-59|0.019^NTPase_1|36-167|4.2e-05^NACHT|36-57|2.8e-05^MobB|36-62|8e-05^AAA_30|36-62|0.0001^Roc|36-56|0.011^PduV-EutP|36-56|0.002^SRPRB|36-56|0.018^AAA_5|36-70|0.00072^ABC_tran|36-61|0.00054^FeoB_N|37-57|0.071^MMR_HSR1|37-60|0.011^MeaB|37-72|2.3e-05^cobW|37-218|1.3e-05^Dynamin_N|37-56|0.037^AAA_33|37-84|1.5e-05^Viral_helicase1|37-56|0.00016^AAA_18|37-57|0.0004^DO-GTPase1|37-59|0.00018^DUF87|37-57|0.0016^ATP_bind_1|38-276|4.6e-87^PRK|38-86|0.00064^CLP1_P|40-177|1.2e-06^Thymidylate_kin|40-68|0.00076^SCP_3|49-73|0.00016^Dynamin_N|118-184|0.0018^SRP54|122-172|0.25^SRPRB|122-208|0.01^MMR_HSR1|124-204|1.5e-05^PduV-EutP|125-160|0.29^FeoB_N|128-211|6.2e-07^RsgA_GTPase|131-140|2.5^Roc|136-206|0.049^Viral_helicase1|151-174|3.4^Arf|164-270|0.016^RsgA_GTPase|178-240|0.0082^G-alpha|194-234|0.049^MeaB|199-302|0.0024^TsaE|207-224|1.7^AAA_22|253-284|6.5^AAA_16|267-313|2.7^SRPRB|279-304|8.5^Zeta_toxin|281-317|3.6^ABC_tran|286-318|4.8^RsgA_GTPase|287-334|2.3^Thymidylate_kin|287-313|9.4^AAA_30|290-317|7.1^DUF87|292-314|1.8^G-alpha|312-312|1.3^AAA_18|333-356|4.3^Zeta_toxin|352-377|2.3 PP2C|287-489|2.8e-61^PP2C_2|319-423|1.6e-05 INTRACHROMOSOMAL[chr2:0.22Mb] 8 2 8 2 ONLY_REF_SPLICE YES_LDAS 0.1061 GT 1.8323 AG 1.9899 ENST00000616939.4 1-392 ENST00000344034.5 121-1641 chr2|+|[0]27629017-27629169[2]|[0]27629859-27629952[0]|[1]27631027-27631066[1]|[2]27631834-27631900[2]|[0]27632633-27632670[1]<==>chr2|-|[2]27381599-27381805[0]|[2]27382126-27382228[2]|[1]27382476-27382605[1]|[0]27383366-27383600[0]|[2]27383952-27384092[0]|[2]27384673-27385088[1]|[0]27385747-27385879[0]|[2]27386194-27386279[1]|[0]27387089-27387158[0] atgcggtgtctctatggtcgggtgggtggggccaggaggaagatggcggcgtccgcagctgccgctgagctccaggcttctgggggtccgcggcacccagtgtgtctgttggtgttgggaatggcgggatccgggaaaaccacttttgtacagaggctcacaggacacctgcatgcccaaggcactccaccgtatgtgatcaacctggatccagcagtacatgaagttccctttcctgccaatattgatattcgtgatactgtaaagtataaagaagtaatgaaacaatatggacttggacccaatggcggcatagtgacctcactcaatctctttgctaccagatttgatcaggtgatgaaatttattgagaaggcccagaacatgtccaaGATGCTCACAACTGTATTCCTGAGCTGGACAGTGAGACAGCCATGTTTTCTGTCTACGATGGACATGGAGGGGAGGAAGTTGCCTTGTACTGTGCCAAATATCTTCCTGATATCATCAAAGATCAGAAGGCCTACAAGGAAGGCAAGCTACAGAAGGCTTTAGAAGATGCCTTCTTGGCTATTGACGCCAAATTGACCACTGAAGAAGTCATTAAAGAGCTGGCACAGATTGCAGGGCGACCCACTGAGGATGAAGATGAAAAAGAAAAAGTAGCTGATGAAGATGATGTGGACAATGAGGAGGCTGCACTGCTGCATGAAGAGGCTACCATGACTATTGAAGAGCTGCTGACACGCTACGGGCAGAACTGTCACAAGGGCCCTCCCCACAGCAAATCTGGAGGTGGGACAGGCGAGGAACCAGGGTCCCAGGGCCTCAATGGGGAGGCAGGACCTGAGGACTCAACTAGGGAAACTCCTTCACAAGAAAATGGCCCCACAGCCAAGGCCTACACAGGCTTTTCCTCCAACTCGGAACGTGGGACTGAGGCAGGCCAAGTTGGTGAGCCTGGCATTCCCACTGGTGAGGCTGGGCCTTCCTGCTCTTCAGCCTCTGACAAGCTGCCTCGAGTTGCTAAGTCCAAGTTCTTTGAGGACAGTGAGGATGAGTCAGATGAGGCGGAGGAAGAAGAGGAAGACAGTGAGGAATGCAGCGAGGAAGAGGATGGCTACAGCAGTGAGGAGGCAGAGAATGAGGAAGATGAGGATGACACCGAGGAGGCTGAAGAGGACGATGAAGAAGAAGAAGAAGAGATGATGGTGCCAGGGATGGAAGGCAAAGAGGAGCCTGGCTCTGACAGTGGTACAACAGCGGTGGTGGCCCTGATACGAGGGAAGCAGTTGATTGTAGCCAACGCAGGAGACTCTCGCTGTGTGGTATCTGAGGCTGGCAAAGCTTTAGACATGTCCTATGATCACAAACCAGAGGATGAAGTAGAACTAGCACGCATCAAGAATGCTGGTGGCAAGGTCACCATGGATGGGCGAGTCAACGGGGGCCTCAACCTCTCCAGAGCCATTGGGGACCACTTCTATAAGAGAAACAAGAACCTGCCACCTGAGGAACAGATGATTTCAGCCCTTCCTGACATCAAGGTGCTGACTCTCACTGACGACCATGAATTCATGGTCATTGCCTGTGATGGCATCTGGAATGTGATGAGCAGCCAGGAAGTTGTAGATTTCATTCAATCAAAGATCAGCCAGCGTGATGAAAATGGGGAGCTTCGGTTATTGTCATCCATTGTGGAAGAGCTGCTGGATCAGTGCCTGGCACCAGACACTTCTGGGGATGGTACAGGGTGTGACAACATGACCTGCATCATCATTTGCTTCAAGCCCCGAAACACAGCAGAGCTCCAGCCAGAGAGTGGCAAGCGAAAACTAGAGGAGGTGCTCTCTACTGAGGGGGCTGAAGAAAATGGCAACAGCGACAAGAAGAAGAAGGCCAAGCGAGACTAG MRCLYGRVGGARRKMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKMLTTVFLSWTVRQPCFLSTMDMEGRKLPCTVPNIFLISSKIRRPTRKASYRRL*KMPSWLLTPN*PLKKSLKSWHRLQGDPLRMKMKKKK*LMKMMWTMRRLHCCMKRLP*LLKSC*HATGRTVTRALPTANLEVGQARNQGPRASMGRQDLRTQLGKLLHKKMAPQPRPTQAFPPTRNVGLRQAKLVSLAFPLVRLGLPALQPLTSCLELLSPSSLRTVRMSQMRRRKKRKTVRNAARKRMATAVRRQRMRKMRMTPRRLKRTMKKKKKR*WCQGWKAKRSLALTVVQQRWWP*YEGSS*L*PTQETLAVWYLRLAKL*TCPMITNQRMK*N*HASRMLVARSPWMGESTGASTSPEPLGTTSIRETRTCHLRNR*FQPFLTSRC*LSLTTMNSWSLPVMASGM**AARKL*ISFNQRSASVMKMGSFGYCHPLWKSCWISAWHQTLLGMVQGVTT*PASSFASSPETQQSSSQRVASEN*RRCSLLRGLKKMATATRRRRPSET FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33614 TOMM34::MATN4 ENSG00000025772.8::ENSG00000124159.17 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA TOMM34 ENSG00000025772.8 protein_coding - - chr20:44942130-44960397:- chr20:44943012:- chr20:43570771-43589038:- chr20:43571653:- MATN4 ENSG00000124159.17 protein_coding - - chr20:45293445-45308529:- chr20:45294015:- chr20:43922085-43937169:- chr20:43922655:- chr20:44942634,chr20:44942634,chr20:44942638 chr20:45296299,chr20:45296298,chr20:45296262 NA NA chr20:43571275,chr20:43571275,chr20:43571279 chr20:43924939,chr20:43924938,chr20:43924902 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:0.33Mb] 5 9 5 8.75 INCL_NON_REF_SPLICE YES_LDAS 0.146 GT 1.6402 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33615 TFDP2::XRN1 ENSG00000114126.18::ENSG00000114127.11 HCC1569 SRR8616181 SRR8639185 BREAST carcinoma (metaplastic_carcinoma) primary star-fusion TRUE TRUE TRUE 2480 FALSE NA FALSE NA TFDP2 ENSG00000114126.18 protein_coding - - chr3:141944428-142149544:- chr3:141993538:- chr3:141663270-141868386:- chr3:141712380:- XRN1 ENSG00000114127.11 protein_coding - - chr3:142306607-142448062:- chr3:142426841:- chr3:142025449-142166904:- chr3:142145683:- chr3:141992519,chr3:141992523 chr3:142428489,chr3:142428490 NA NA chr3:141711361,chr3:141711365 chr3:142147331,chr3:142147332 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame E2F_TDP|129-208|7.6e-25^DP|215-352|4.8e-65 XRN_M-PARTIAL|~309-597|9.3e-101^XRN1_D1|656-844|1.4e-36^XRN1_D2_D3|850-1075|2.3e-42^SH3_12|1102-1171|7e-24^XRN1_D1|1276-1310|4.2^Dicer_dimer|1456-1509|2.9e-05^XRN_M|1606-1669|1.5 ["DepMap2023","ChimerSeq"];INTRACHROMOSOMAL[chr3:0.16Mb] 4 7 4 7 ONLY_REF_SPLICE YES_LDAS 0.1168 GT 1.7819 AG 1.7819 ENST00000489671.6 1-356 ENST00000264951.8 309-5121 chr3|-|[1]141993538-141993585[2]|[1]141995020-141995141[0]|[2]142005441-142005544[1]|[0]142093061-142093127[0]|[2]142101735-142101749[0]<==>chr3|-|[2]142311511-142311813[0]|[2]142312598-142312758[1]|[0]142313136-142313174[1]|[0]142318592-142318694[0]|[2]142318790-142318903[0]|[2]142329434-142329615[1]|[0]142332375-142332531[0]|[2]142332967-142333089[0]|[2]142335448-142335509[1]|[0]142347234-142347342[0]|[2]142355401-142355496[0]|[2]142356912-142357119[2]|[1]142359862-142359931[1]|[0]142365047-142365179[0]|[2]142365310-142365366[0]|[2]142370485-142370620[2]|[1]142371239-142371328[2]|[1]142375798-142375944[2]|[1]142376479-142376594[0]|[2]142380082-142380180[0]|[2]142383300-142383413[0]|[2]142384523-142384685[2]|[1]142397329-142397460[2]|[1]142400444-142400547[0]|[2]142403674-142403772[0]|[2]142403869-142403989[2]|[1]142404907-142405076[0]|[2]142412544-142412663[0]|[2]142414135-142414291[2]|[1]142417140-142417229[2]|[1]142418504-142418609[1]|[0]142418815-142418881[0]|[2]142421016-142421153[0]|[2]142421476-142421543[1]|[0]142422582-142422750[0]|[2]142422835-142422922[2]|[1]142423560-142423642[0]|[2]142425222-142425332[0]|[2]142425429-142425538[1]|[0]142426744-142426841[2] atgacggcaaaaaatgttggtttgacttccacaaatgcagaagtaagaggatttatagatcagaatctcagtccaacaaaaggcaacatttcatttgttgcatttccagtttccaataccaactcacctacaaagattttaccaaaaaccttaggaccaataaatgtgaatgttggaccccaaatgattataagcacaccacagagactaaccagttcaggaagtgttctgattgggagtccatatacccctgcaccagcaatggttactcagacacacatagcagaagctactggctgggtccctggtgatagaaaacgggctagaaaatttatagactctgatttttcagaaagGTCAGCAAAGGAGGCAGAAGACAAAATTAAAAAGGCAATAGAGAAGGGAGAAACTCTTCCTACAGAGGCCAGATTTGATTCCAACTGTATCACACCAGGAACTGAATTTATGGCCAGGTTACATGAACATCTGAAGTATTTTGTAAATATGAAAATTTCCACAGACAAGTCATGGCAAGGAGTTACCATCTACTTCTCAGGCCATGAGACTCCTGGAGAAGGAGAGCATAAAATCATGGAATTTATCAGATCCGAGAAAGCAAAGCCAGATCATGATCCAAACACCAGACACTGTCTTTATGGTTTAGATGCTGACTTGATTATGCTTGGATTAACAAGTCATGAGGCACATTTTTCTCTCTTAAGAGAAGAAGTTCGATTTGGTGGCAAAAAAACACAACGGGTATGTGCTCCAGAAGAAACTACATTTCACCTTCTACACTTGTCTTTAATGAGAGAGTATATTGACTATGAGTTTTCAGTATTAAAAGAAAAGATCACATTTAAATATGATATTGAAAGGATAATAGATGATTGGATTTTGATGGGGTTTCTTGTTGGTAATGATTTTATCCCTCATCTACCTCATTTACATATTAATCATGATGCACTGCCTCTTCTTTATGGAACATATGTTACCATCCTGCCAGAACTTGGGGGTTATATTAATGAAAGTGGGCACCTCAACTTACCTCGATTTGAGAAATACCTTGTGAAACTATCAGATTTTGATCGGGAGCACTTCAGTGAAGTTTTTGTGGACCTAAAATGGTTTGAAAGCAAAGTTGGTAACAAGTACCTCAATGAAGCAGCAGGTGTCGCAGCAGAAGAAGCCAGGAACTACAAGGAAAAGAAAAAGTTAAAGGGCCAGGAAAATTCTCTGTGTTGGACTGCTTTAGACAAAAATGAAGGCGAAATGATAACTTCTAAGGATAATTTAGAAGATGAGACTGAAGATGATGACCTATTTGAAACTGAGTTTAGACAATATAAAAGAACATATTACATGACGAAGATGGGGGTTGACGTAGTATCTGATGACTTTCTGGCTGATCAAGCTGCATGTTATGTTCAGGCAATACAGTGGATTTTGCACTATTACTATCATGGAGTTCAGTCCTGGAGCTGGTATTATCCTTATCATTATGCACCTTTCCTGTCTGATATACACAACATCAGTACACTCAAAATCCATTTTGAACTAGGAAAACCTTTTAAGCCATTTGAACAGCTTCTTGCTGTACTTCCAGCAGCCAGCAAAAATTTACTTCCTGCATGCTACCAGCATTTGATGACCAATGAAGACTCACCAATTATAGAATATTACCCACCTGATTTTAAAACTGACCTAAATGGGAAACAACAGGAATGGGAAGCTGTGGTGTTAATCCCTTTTATTGATGAGAAGCGATTATTGGAAGCCATGGAGACATGTAACCACTCCCTCAAAAAGGAAGAGAGGAAAAGAAACCAACATAGTGAGTGCCTAATGTGCTGGTATGATAGAGACACAGAGTTTATCTATCCTTCTCCATGGCCAGAAAAGTTCCCTGCCATAGAACGATGTTGTACAAGGTATAAAATAATATCCTTAGATGCTTGGCGTGTAGACATAAACAAAAACAAAATAACCAGAATTGACCAGAAAGCATTATATTTCTGTGGATTTCCTACTCTGAAACACATCAGACACAAATTTTTTTTGAAGAAAAGTGGTGTTCAAGTATTCCAGCAAAGCAGTCGTGGAGAAAACATGATGTTGGAAATCTTAGTGGATGCAGAATCAGATGAACTTACCGTAGAAAATGTAGCTTCATCAGTGCTTGGAAAATCTGTCTTTGTTAATTGGCCTCACCTTGAGGAAGCTAGAGTCGTGGCTGTATCAGATGGAGAAACTAAGTTTTACTTGGAAGAACCTCCAGGAACACAGAAGCTTTATTCAGGAAGAACTGCCCCACCATCTAAAGTGGTTCATCTTGGAGATAAAGAACAATCTAACTGGGCAAAAGAAGTACAAGGAATTTCAGAACACTACCTGAGAAGAAAAGGAATAATAATAAATGAAACATCTGCAGTTGTGTATGCTCAGTTACTCACAGGTCGTAAATATCAAATAAATCAAAATGGTGAAGTTCGTCTAGAGAAACAGTGGTCAAAACAAGTTGTTCCTTTTGTTTATCAAACTATTGTCAAGGACATCCGAGCTTTCGACTCCCGTTTCTCCAATATCAAAACATTGGATGATTTGTTTCCTCTGAGAAGTATGGTCTTTATGCTGGGAACTCCCTATTATGGCTGCACTGGAGAAGTTCAGGATTCAGGTGATGTGATTACAGAAGGTAGGATTCGTGTGATTTTCAGCATTCCATGTGAACCCAATCTTGATGCTTTAATACAGAACCAGCATAAATATTCTATAAAGTACAACCCAGGATATGTGTTGGCCAGTCGCCTTGGAGTGAGTGGATACCTTGTTTCAAGGTTTACAGGAAGTATTTTTATTGGAAGAGGATCTAGGAGAAACCCTCATGGAGACCATAAAGCAAATGTGGGTTTAAATCTCAAATTCAACAAGAAAAATGAGGAGGTACCTGGATATACTAAGAAAGTTGGAAGTGAATGGATGTATTCATCTGCAGCAGAACAACTTCTGGCAGAGTACTTAGAGAGAGCTCCAGAACTATTTAGTTATATAGCCAAAAATAGCCAAGAGGATGTGTTCTATGAAGATGACATTTGGCCTGGAGAAAATGAGAATGGTGCTGAAAAAGTTCAAGAAATTATTACTTGGCTAAAAGGACATCCTGTCAGTACTTTATCTCGTTCTTCTTGTGATTTACAAATTCTGGATGCAGCTATTGTTGAGAAAATTGAGGAAGAAGTCGAAAAGTGCAAGCAAAGAAAGAATAATAAGAAGGTGCGAGTAACAGTGAAACCCCATTTGCTATACAGACCTTTAGAACAGCAACATGGAGTCATTCCTGATCGGGATGCAGAATTTTGTCTTTTTGACCGTGTTGTAAATGTGAGAGAAAACTTCTCAGTTCCAGTTGGCCTTCGAGGCACCATCATAGGAATAAAAGGAGCTAATAGAGAAGCCGATGTACTATTTGAAGTATTATTTGATGAAGAATTTCCTGGAGGGTTAACAATAAGATGCTCACCTGGTAGAGGTTATCGACTGCCAACAAGTGCCTTGGTGAACCTTTCTCATGGGAGTCGCTCTGAAACTGGAAATCAGAAGTTGACAGCCATCGTAAAACCACAACCAGCTGTACATCAACATAGCTCAAGTTCATCAGTTTCCTCTGGGCATTTGGGAGCCCTCAACCATTCCCCTCAATCACTTTTTGTTCCTACTCAAGTACCTACTAAAGATGATGATGAATTCTGCAACATTTGGCAGTCCTTACAGGGATCTGGAAAGATGCAATACTTTCAGCCAACTATACAAGAGAAGGGTGCAGTTCTACCTCAAGAAATAAGCCAAGTAAATCAACATCATAAATCTGGCTTTAATGACAACAGTGTTAAATATCAGCAAAGAAAACATGACCCTCACAGAAAATTTAAAGAAGAGTGTAAGAGTCCTAAAGCTGAGTGTTGGTCCCAAAAAATGTCCAATAAGCAGCCTAACTCTGGAATTGAGAACTTTTTAGCATCTTTGAATATCTCCAAAGAAAATGAAGTACAGTCATCTCATCATGGGGAGCCTCCAAGTGAAGAGCATTTGTCACCACAGTCATTTGCCATGGGAACACGGATGCTTAAAGAAATTCTAAAAATTGATGGCTCTAACACTGTGGACCATAAGAATGAAATCAAACAGATTGCTAATGAAATCCCTGTTTCCTCTAACAGAAGAGATGAATATGGATTACCCTCTCAGCCTAAACAAAATAAGAAATTAGCATCTTATATGAACAAGCCTCACAGTGCTAATGAGTACCATAATGTTCAGTCTATGGACAATATGTGTTGGCCTGCCCCCAGCCAGATCCCTCCTGTATCCACACCAGTAACTGAACTTTCTCGAATTTGTTCCCTTGTTGGAATGCCACAACCTGATTTCTCCTTTCTTAGGATGCCACAGACAATGACCGTTTGCCAAGTAAAATTATCTAATGGCTTACTGGTACATGGGCCACAGTGCCACTCTGAAAATGAAGCCAAAGAGAAAGCTGCACTTTTTGCTTTACAACAGTTGGGCTCCTTAGGCATGAATTTCCCTTTGCCTTCACAAGTATTTGCAAATTATCCTTCAGCTGTACCACCTGGAACCATTCCTCCAGCCTTTCCCCCACCTACTGGCTGGGATCACTATGGAAGCAACTATGCATTGGGGGCAGCTAATATAATGCCTTCGTCGTCTCATCTCTTTGGCTCAATGCCATGGGGACCATCGGTGCCAGTTCCTGGGAAGCCCTTCCATCATACTTTATATTCTGGGACCATGCCCATGGCTGGGGGAATACCAGGGGGTGTGCACAATCAGTTTATACCTCTGCAGGTTACTAAAAAAAGGGTTGCAAACAAAAAGAACTTTGAGAATAAGGAAGCCCAGAGTTCTCAAGCCACTCCAGTTCAGACTAGCCAGCCAGATTCTTCCAACATTGTCAAAGTAAGTCCACGGGAGAGCTCATCAGCTTCTTTGAAGTCCTCTCCGATTGCTCAACCTGCATCTTCTTTTCAAGTTGAAACTGCCTCTCAAGGCCATAGTATATCTCACCATAAGTCAACACCAATCTCTTCTTCAAGAAGAAAATCAAGAAAACTGGCTGTTAATTTTGGTGTTTCTAAACCTTCTGAGTAA MTAKNVGLTSTNAEVRGFIDQNLSPTKGNISFVAFPVSNTNSPTKILPKTLGPINVNVGPQMIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATGWVPGDRKRARKFIDSDFSERSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFDSRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSSSSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVLPQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIENFLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQIANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVSTPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTPISSSRRKSRKLAVNFGVSKPSE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33616 CYTH1::PRPSAP1 ENSG00000108669.18::ENSG00000161542.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2484 TRUE 4534 TRUE 1720 CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78782202:- chr17:76670130-76778379:- chr17:76778284:- PRPSAP1 ENSG00000161542.17 protein_coding - - chr17:76309478-76384521:- chr17:76344737:- chr17:74305559-74380602:- chr17:74340818:- chr17:78779820,chr17:78779825 chr17:76347114,chr17:76347116 NA NA chr17:76775902,chr17:76775907 chr17:74343195,chr17:74343197 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame UPF0128-PARTIAL|1-22~|4.6e-05^CEP170_C-PARTIAL|2-22~|1e-05^FapA-PARTIAL|9-22~|2.2e-06^CCDC90-like-PARTIAL|10-22~|2.1e-05^CCDC22_CC-PARTIAL|10-22~|4.6e-05^WEMBL-PARTIAL|11-22~|9.5e-06^FlgN-PARTIAL|12-22~|3e-06^GPS2_interact-PARTIAL|13-22~|1.1e-06^APG6_N-PARTIAL|13-22~|3.6e-06^DUF4140-PARTIAL|13-22~|4.4e-05^Caldesmon-PARTIAL|13-22~|0.00015^Halo_GVPC|14-22|1.3^HAUS5-PARTIAL|15-22~|9.1e-05^Knl1_RWD_C-PARTIAL|17-22~|0.00026^DivIC-PARTIAL|20-22~|7.4e-05 Pribosyl_synth-PARTIAL|~224-379|2.8e-101^Pribosyltran|251-335|5.9e-08 ["Mitelman","Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.29Mb] 90 5 90 4.5 ONLY_REF_SPLICE YES_LDAS 0.934 GT 1.8256 AG 1.5546 ENST00000589296.5 1-22 ENST00000446526.8 224-1158 chr17|-|[0]78782202-78782223[0]<==>chr17|-|[2]76311542-76311700[0]|[2]76312870-76313016[0]|[2]76313821-76313891[1]|[0]76328717-76328862[2]|[1]76330043-76330098[0]|[2]76330551-76330666[1]|[0]76332263-76332435[2]|[1]76344671-76344737[1] atggaggaggacgacagctacgAAACAAGAGTTGAAATAAAAGAATCTGTTCGTGGCCAAGATATTTTCATTATACAGACAATACCCAGAGATGTGAATACAGCTGTGATGGAGTTGCTCATCATGGCTTACGCACTGAAGACTGCCTGTGCCAGGAACATTATTGGGGTCATCCCCTACTTCCCCTACAGCAAGCAGAGCAAGATGAGGAAGAGGGGTTCCATTGTGTGCAAGCTGCTAGCATCCATGCTGGCGAAAGCAGGTTTAACTCACATTATCACTATGGATCTTCATCAAAAGGAAATACAAGGCTTTTTCAGCTTTCCTGTGGACAACCTTAGAGCCTCACCTTTCCTGCTTCAGTATATCCAGGAAGAAATTCCAAATTACAGAAATGCAGTCATTGTAGCTAAGTCTCCTGATGCTGCAAAGAGGGCCCAGTCCTATGCGGAGAGACTGCGTCTGGGTTTGGCCGTCATTCACGGGGAAGCTCAGTGCACGGAACTGGACATGGACGATGGTCGTCACTCCCCGCCTATGGTCAAAAATGCTACTGTGCACCCAGGCCTGGAGTTGCCATTGATGATGGCCAAAGAGAAGCCACCGATAACTGTAGTTGGAGATGTTGGAGGCCGCATCGCAATCATCGTGGATGACATTATTGACGATGTGGAGAGTTTTGTTGCTGCCGCGGAGATCCTGAAAGAGAGAGGCGCCTATAAGATCTATGTTATGGCCACCCACGGCATCCTGTCTGCAGAGGCCCCTCGCCTGATTGAGGAGTCCTCCGTAGACGAGGTGGTGGTGACGAATACTGTCCCTCATGAGGTTCAGAAGCTGCAATGTCCCAAGATAAAGACTGTGGATATCAGTTTGATTCTTTCTGAAGCCATTCGGAGAATCCACAATGGAGAGTCCATGGCCTACCTTTTCCGAAACATCACTGTGGATGACTAG MEEDDSYETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33617 EXOC7::CYTH1 ENSG00000182473.22::ENSG00000108669.18 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2486 FALSE NA FALSE NA EXOC7 ENSG00000182473.22 protein_coding - - chr17:76081016-76121576:- chr17:76097796:- chr17:74077097-74117657:- chr17:74093877:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78709732:- chr17:76670130-76778379:- chr17:76705814:- chr17:76096365,chr17:76096372 chr17:78779811,chr17:78779815 NA NA chr17:74092446,chr17:74092453 chr17:76775893,chr17:76775897 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame ERM_helical|6-79|8.8e-05^COG5_N|12-94|1.3e-05^Sec3_CC|17-107|4.2e-06^Vps52_CC|23-108|2e-05^Sec20|34-100|0.00044^Exo70_C|43-59|0.61^Exo70_N|43-43|3.7^BAG|52-87|1.5^Exo70_N|80-159|5.5e-17^BAG|117-134|4.1^Exo70_N|226-280|0.53^BAG|270-281|3.7^Sec20|271-284|8.4^Exo70_C-PARTIAL|336-640~|7.5e-78^BAG|375-395|0.012^BAG|552-593|1.2^COG5_N|572-599|3.6^ERM_helical|573-594|1.1^RolB_RolC|574-611|3.9e-05^BAG-PARTIAL|635-640~|0.035 APG6_N-PARTIAL|~23-69|6.9e-06^SLX9-PARTIAL|~23-72|1.3e-05^FapA-PARTIAL|~23-76|1.2e-05^BBS2_C-PARTIAL|~23-71|0.00068^GPS2_interact-PARTIAL|~23-65|5e-05^Sec7|62-244|4.9e-82^PH_20|133-147|4.3^Pilosulin|185-208|8.2e-05^PH|263-376|1.3e-27^PH_20|263-324|1.6e-05^PH_11|264-374|3.2e-09^PH_8|265-312|9.7e-06^PH_3|278-319|2.1e-05^BBS2_C|301-355|0.0066^PH_8|347-374|1.7^PH_3|361-374|3 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.55Mb] 47 18 47 18 ONLY_REF_SPLICE YES_LDAS 0.6424 GT 1.8256 AG 1.9656 ENST00000405575.8 1-640 ENST00000446868.8 23-1197 chr17|-|[0]76097796-76098018[0]|[2]76101271-76101376[2]|[1]76101679-76101863[0]|[2]76103361-76103426[0]|[2]76103633-76103692[0]<==>chr17|-|[2]78676091-78676169[2]|[1]78680190-78680344[0]|[2]78680971-78681042[0]|[2]78692417-78692493[1]|[0]78696007-78696009[1]|[0]78698269-78698380[0]|[2]78698820-78698968[1]|[0]78700331-78700443[2]|[1]78701671-78701751[2]|[1]78702122-78702240[0]|[2]78702538-78702604[2]|[1]78708197-78708261[0]|[2]78709650-78709732[1] atgattcccccacaggaggcatccgctcgacggcgggagattgaggacaagctgaagcaggaggaggagactctgtccttcatccgagacagcctggagaagagcgaccagctcactaagaacatggtgtctatcttatcatcctttgagagccgccttatgaagctggagaactccatcatccctgtgcacaagcagacggagaatctgcagcggctgcaggagaatgttgagaagacgctgtcctgcctggaccatgtcatcagctactaccatgtggccagtgacactgagaagatcatcagagagggccccacaggtaggctggaagagtacctgggaagcatggccaagattcagaaggcagtggagtatttccaggacaacagcccagacagcccggaactcaacaaagtgaaactgctctttgagcgcgggaaggaggccctggagtccgaatttcgcagcctgatgacgcggcacagtaaggtcgtctcgcccgtgctcatcttggatctgatcagtggtgacgatgatctggaggcccaggaggacgtgaccctggagcacctgcccgagagcgtgctccaggatgtcattcgcatctcccgctggctggtggaatatggccgcaaccaagTTCCCAGTGACCTGACAGCAGAGGAGCGTCAAGAACTGGAGAACATCCGACGGAGAAAACAGGAGCTGCTGGCTGACATTCAGAGGCTGAAGGATGAGATAGCAGAAGTAGCTAATGAAATTGAAAACCTGGGATCCACAGAGGAAAGGAAAAACATGCAGAGGAACAAACAGGTAGCCATGGGCAGGAAAAAATTTAATATGGACCCTAAAAAGGGGATCCAGTTCTTAATAGAGAACGACCTCCTGAAGAACACTTGTGAAGACATTGCCCAGTTCTTATATAAAGGCGAAGGGCTCAACAAGACAGCCATCGGCGACTACCTAGGGGAGAGAGATGAGTTTAATATCCAGGTTCTTCATGCATTTGTGGAGCTGCATGAGTTCACTGATCTTAATCTCGTCCAGGCACTACGGCAGTTCCTGTGGAGCTTCCGGCTACCCGGAGAGGCCCAGAAGATCGACCGGATGATGGAGGCGTTTGCCCAGCGATATTGTCAGTGCAATAATGGCGTGTTCCAGTCCACGGATACTTGTTACGTCCTCTCCTTTGCCATCATCATGTTGAACACCAGTCTGCACAACCCCAATGTCAAAGATAAGCCCACTGTGGAGAGGTTCATTGCCATGAACCGAGGCATCAATGATGGGGGAGACCTGCCGGAGGAGCTCCTCCGGAATCTCTATGAGAGCATAAAAAATGAACCCTTTAAAATCCCAGAAGACGACGGGAATGACCTCACTCACACTTTCTTCAATCCAGACCGAGAAGGCTGGCTATTGAAACTCGGAGGTGGCAGGGTAAAGACTTGGAAGAGACGCTGGTTCATTCTGACTGACAACTGCCTTTACTACTTTGAGTATACCACGGATAAGGAGCCCCGTGGAATCATCCCTTTAGAGAATCTGAGTATCCGGGAAGTGGAGGACTCCAAAAAACCAAACTGCTTTGAGCTTTATATCCCCGACAATAAAGACCAAGTTATCAAGGCCTGCAAGACCGAGGCTGACGGGCGGGTGGTGGAGGGGAACCACACTGTTTACCGGATCTCAGCTCCGACGCCCGAGGAGAAGGAGGAGTGGATTAAGTGCATTAAAGCAGCCATCAGCAGGGACCCTTTCTACGAAATGCTCGCAGCACGGAAAAAGAAGGTCTCCTCCACGAAGCGACACTGA MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTKNMVSILSSFESRLMKLENSIIPVHKQTENLQRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDLEAQEDVTLEHLPESVLQDVIRISRWLVEYGRNQVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDSKKPNCFELYIPDNKDQVIKACKTEADGRVVEGNHTVYRISAPTPEEKEEWIKCIKAAISRDPFYEMLAARKKKVSSTKRH* FALSE TRUE hsa-mir-6868 chr17:76098019-76098076:- FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33618 GCC2::SEPTIN10 ENSG00000135968.22::ENSG00000186522.15 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2488 FALSE NA FALSE NA GCC2 ENSG00000135968.22 protein_coding + + chr2:108449107-108509415:+ chr2:108499754:+ chr2:109065563-109125871:+ chr2:109116210:+ SEPTIN10 ENSG00000186522.15 protein_coding - - chr2:109542799-109614143:- chr2:109565859:- chr2:110300376-110371720:- chr2:110323436:- chr2:108501307 chr2:109566197 NA NA chr2:109117763 chr2:110323774 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame GAS|31-60|0.018^Filament|48-254|3.2e-08^GAS|94-205|0.011^Rab_bind|131-173|0.36^GRIP|150-169|0.18^GAS|228-312|0.58^Filament|231-310|7.5e-06^Filament|269-563|4^GAS|307-390|0.69^Rab_bind|334-358|0.11^GAS|402-523|0.35^Rab_bind|417-471|0.63^GAS|465-593|0.85^Rab_bind|517-550|0.6^GAS|538-653|0.011^Filament|556-691|0.018^Rab_bind|595-608|2^GAS|598-744|0.1^Filament|630-888|4^Rab_bind|642-690|2^Rab_bind|727-747|1.1^GAS|809-895|4^GAS|811-893|1.5^GAS|944-970|0.3^Filament|950-1033|0.035^GAS|977-1078|7.3e-07^Filament|1024-1239|4^Filament|1100-1321|4^GAS|1101-1260|4^Rab_bind|1170-1216|0.5^Rab_bind|1254-1307|0.67^GAS|1264-1422|0.0022^Filament|1333-1460|0.0035^Rab_bind|1391-1417|0.86^Filament|1440-1478|0.0015^GAS|1445-1497|0.54^Rab_bind|1548-1612|2.3e-43^Filament|1560-1611|0.2^GAS|1563-1621|0.019^GRIP|1613-1656|1.1e-20 none none 40 3 39.96 3 ONLY_REF_SPLICE YES_LDAS 0.4247 GT 1.9329 AG 1.9086 ENST00000309863.11 1-4984 ENST00000356688.8 763-1635 chr2|+|[0]108449275-108449280[2]|[0]108449633-108449689[2]|[0]108451028-108451112[0]|[1]108452399-108452466[2]|[0]108468980-108469084[2]|[0]108469651-108472116[2]|[0]108472827-108472899[0]|[1]108475535-108475635[2]|[0]108475752-108475850[2]|[0]108481697-108481816[2]|[0]108482287-108482451[2]|[0]108483062-108483166[2]|[0]108484149-108484311[0]|[1]108485636-108485736[2]|[0]108485831-108485908[2]|[0]108486511-108486648[2]|[0]108487699-108487820[1]|[2]108489838-108490014[1]|[2]108492573-108492790[0]|[1]108495291-108495485[0]|[1]108496970-108497109[2]|[0]108499553-108499754[0]<==>chr2|-|[2]109544122-109544324[1]|[0]109545460-109545542[2]|[1]109546050-109546237[0]|[2]109553087-109553219[2]|[1]109564366-109564534[1]|[0]109565763-109565859[0] atggaggatcttgttcaagatggggtggcttcaccagctacccctgggaccgggaaatctaagctggaaacattgcccaaagaagacctcatcaagtttgccaagaaacagatgatgctaatacagaaagctaaatcaaggtgtacagaattggagaaagaaattgaagaactcagatcaaaacctgttactgaaggaactggtgatattattaaggcattaactgaacgtctggatgctcttcttctggaaaaagcagagactgagcaacagtgtctttctctgaaaaaggaaaatataaaaatgaagcaagaggttgaggattctgtaacaaagatgggagatgcacataaggagttggaacaatcacatataaactatgtgaaagaaattgaaaatttgaaaaatgagttgatggcagtacgttccaaatacagtgaagacaaagctaacttacaaaagcagctggaagaagcaatgaatacgcaattagaactttcagaacaacttaaatttcagaacaactctgaagataatgttaaaaaactacaagaagagattgagaaaattaggccaggctttgaggagcaaattttatatctgcaaaagcaattagacgctaccactgatgaaaagaaggaaacagttactcaactccaaaatatcattgaggctaattctcagcattaccaaaaaaatattaatagtttgcaggaagagcttttacagttgaaagctatacaccaagaagaggtgaaagagttgatgtgccagattgaagcatcagctaaggaacatgaagcagagataaataagttgaacgagctaaaagagaacttagtaaaacaatgtgaggcaagtgaaaagaacatccagaagaaatatgaatgtgagttagaaaatttaaggaaagccacctcaaatgcaaaccaagacaatcagatatgttctattctcttgcaagaaaatacatttgtagaacaagtagtaaatgaaaaagtcaaacacttagaagataccttaaaagaacttgaatctcaacacagtatcttaaaagatgaggtaacttatatgaataatcttaagttaaaacttgaaatggatgctcaacatataaaggatgagttttttcatgaacgggaagacttagagtttaaaattaatgaattattactagctaaagaagaacagggctgtgtaattgaaaaattaaaatctgagctagcaggtttaaataaacagttttgctatactgtagaacagcataacagagaagtacagagtcttaaggaacaacatcaaaaagaaatatcagaactaaatgagacatttttgtcagattcagaaaaagaaaaattaacattaatgtttgaaatacagggtcttaaggaacagtgtgaaaacctacagcaagaaaagcaagaagcaattttaaattatgagagtttacgagagattatggaaattttacaaacagaactgggggaatctgctggaaaaataagtcaagagttcgaatcaatgaagcaacagcaagcatctgatgttcatgaactgcagcagaagctcagaactgcttttactgaaaaagatgcccttctcgaaactgtgaatcgcctccagggagaaaatgaaaagttactatctcaacaagaattggtaccagaacttgaaaataccataaagaaccttcaagaaaagaatggagtatacttacttagtctcagtcaaagagataccatgttaaaagaattagaaggaaagataaattctcttactgaggaaaaagatgattttataaataaactgaaaaattcccatgaagaaatggataatttccataagaaatgtgaaagggaagaaagattgattcttgaacttgggaagaaagtagagcaaacaatccagtacaacagtgaactagaacaaaaggtaaatgaattaacaggaggactagaggagactttaaaagaaaaggatcaaaatgaccaaaaactagaaaaacttatggttcaaatgaaagttctctctgaagacaaagaagtattgtcagctgaagtgaagtctctttatgaggaaaacaataaactcagttcagaaaaaaaacagttgagtagggatttggaggtttttttgtctcaaaaagaagatgttatccttaaagaacatattactcaattagaaaagaaacttcagttaatggttgaagagcaagataatttaaataaactgcttgaaaatgagcaagttcagaagttatttgttaaaactcagttgtatggttttcttaaagaaatgggatcagaagtttcagaagacagtgaagagaaagatgttgttaatgtcctacaggcagtcggtgaatccttggcaaaaataaatgaggaaaaatgcaacctggcttttcagcgtgatgaaaaagtattagagttagaaaaagagattaagtgccttcaagaagagagtgtagttcagtgtgaagaacttaagtctttattgagagactatgagcaagagaaagttctcttaaggaaagagttagaagaaatacagtcagaaaaagaggccctgcagtctgatcttctagaaatgaagaatgctaatgaaaaaacaaggcttgaaaatcagaatcttttaattcaagttgaagaagtatctcaaacatgtagcaaaagtgaaatccataatgaaaaagaaaaatgttttataaaggaacatgaaaacctaaagccactactagaacaaaaagaattacgagataggagagcagagttgatactattaaaggattccttagcaaaatcaccttctgtaaaaaatgatcctctgtcttcagtaaaagagttggaagaaaaaatagaaaatctggaaaaagaatgcaaagaaaaggaggagaaaataaataagataaaattagttgccgtaaaggcaaagaaagaactagattccagcagaaaagagacccagactgtgaaggaagaacttgaatctcttcgatcagaaaaggaccagttatctgcttccatgagagatctcattcaaggagcagaaagctataagaatcttttattagaatatgaaaagcagtcagagcaactggatgtggaaaaagaacgtgctaataattttgagcatcgtattgaagaccttacaagacaattaagaaattcgactttgcagtgtgaaacaataaattctgataatgaagatctcctggctcgtattgagacattacagtctaatgccaaattattagaagtacagattttagaagtccagagagccaaagcaatggtagacaaagaattagaagctgaaaaacttcagaaagaacagaagataaaggaacatgccactactgtaaatgaacttgaagaacttcaggtacaacttcaaaagcaaaagaaacagcttcagaaaaccatgcaagaattagagctggttaaaaaggatgcccaacaaaccacattgatgaatatggaaatagctgattatgaacgtttgatgaaagaactaaatcaaaagttaactaataaaaacaacaagatagaagatttggagcaagaaataaaaattcaaaaacagaaacaagaaaccctacaagaagaaataacttcattacagtcttcagtacaacaatatgaagaaaaaaacaccaaaatcaagcaattgcttgtgaaaaccaaaaaggaactggcagattcaaagcaagcagaaactgatcacttaatacttcaagcatctttaaaaggtgagctggaggcaagccagcagcaagtagaagtctataaaatacagctggctgaaataacatcagagaagcacaaaatccacgagcacctgaaaacctctgcggaacagcaccagcgtacgctaagtgcataccagcagagagtgacagcactacaggaagagtgccgtgctgccaaggcagaacaagctactgtaacctctgaattcgagagctacaaagtccgagttcataatgttctaaaacaacagaaaaataaatctatgtctcaggctgaaactgagggcgctaaacaagaaagggaacatctggaaatgctgattgaccagctaaaaatcaaattacaagatagccaaaataacttacagattaatgtatctgaacttcaaacattgcagtctgaacatgatacactgctagaaaggcacaacaagatgctgcaggaaactgtgtccaaagaggcggaactccgggaaaaattgtgttcaatacagtcagagaacatgatgatgaaatctgaacatacacagactgtgagtcagctaacatcccagaacgaggtccttcgaaatagcttccgagatcaagtgcgacatttgcaggaagaacacagaaagacagtggagacattacagcagcagctctccaagatggaagcacagctcttccagcttaagaatgaaccgaccacaagaagcccagtttcctctcaacaatctttgaagaaccttcgagaaaggagaaacacagacctcccgcttctagacatgcacactgtaacccgggaagagggagaaggcatggagacaactgatacggagtctgtgtcttccgccagcacatacacacagtctttagagcagctgcttaactctcccgaaactaaacttgagcctccattatggcatgctgaatttaccaaagaagaattggttcagaagctcagttccaccacaaaaagtgcagatcacttaaacggcctgcttcgggaaacagaagcaaccaatgcaattcttatggagcaaattaagcttctcaaaagtgaaataagaagattggaaaggaatcaagagcgagagaagtctgcagctaacctggaatacttgaagaacgtcttgctgcagttcattttcttgaaaccaggtagtgaaagagagagacttcttcctgttataaatacgatgttgcagctcagccctgaagaaaagggaaaacttgctgcggttgctcaagGGACAGTTGCCGTTTGCTGTTGTGGGAAGTATGGATGAGGTAAAAGTCGGAAACAAGATGGTCAAAGCTCGCCAGTACCCTTGGGGTGTTGTACAAGTGGAAAATGAAAACCACTGTGACTTTGTAAAGCTGCGGGAAATGCTCATTTGTACAAATATGGAGGACCTGCGAGAGCAGACCCATACCAGGCACTATGAGCTTTACAGGCGCTGCAAACTGGAGGAAATGGGCTTTACAGATGTGGGCCCAGAAAACAAGCCAGTCAGTGTTCAAGAGACCTATGAAGCCAAAAGACATGAGTTCCATGGTGAACGTCAGAGGAAGGAAGAAGAAATGAAACAGATGTTTGTGCAGCGAGTAAAGGAGAAAGAAGCCATATTGAAAGAAGCTGAGAGAGAGCTACAGGCCAAATTTGAGCACCTTAAGAGACTTCACCAAGAAGAGAGAATGAAGCTTGAAGAAAAGAGAAGACTTTTGGAAGAAGAAATAATTGCTTTCTCTAAAAAGAAAGCTACCTCCGAGATATTTCACAGCCAGTCCTTTCTGGCAACAGGCAGCAACCTGAGGAAGGACAAGGACCGTAAGAAGGAACCAGGCTGTCGATTCGAACTCCTGTGCATTGATGTCAGAGCTTGTGAAACCAATGGTGGACGTAAAGACGCAGAGAAAGCTCCAATTTTTTGTAAAACAGAAGTTCCAGAGCACAGAAGGTCATCATCACAAGCAAACTTTATTAAAAAAAAACTAGAAGTGTGCTTTGATTTTGCTGTTATTTGTTTTATCACTTCTATATTTGGTGAACAGCCACAGTTACTGATATTTATGGAAAAGTACTTTCAAGTACAAGGTCAATACATAAGCCAGAGTGAATGA MEDLVQDGVASPATPGTGKSKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKPVTEGTGDIIKALTERLDALLLEKAETEQQCLSLKKENIKMKQEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSKYSEDKANLQKQLEEAMNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHEAEINKLNELKENLVKQCEASEKNIQKKYECELENLRKATSNANQDNQICSILLQENTFVEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQFCYTVEQHNREVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKNGVYLLSLSQRDTMLKELEGKINSLTEEKDDFINKLKNSHEEMDNFHKKCEREERLILELGKKVEQTIQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKEDVILKEHITQLEKKLQLMVEEQDNLNKLLENEQVQKLFVKTQLYGFLKEMGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNEKEKCFIKEHENLKPLLEQKELRDRRAELILLKDSLAKSPSVKNDPLSSVKELEEKIENLEKECKEKEEKINKIKLVAVKAKKELDSSRKETQTVKEELESLRSEKDQLSASMRDLIQGAESYKNLLLEYEKQSEQLDVEKERANNFEHRIEDLTRQLRNSTLQCETINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKQKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYQQRVTALQEECRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQINVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEEHRKTVETLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDLPLLDMHTVTREEGEGMETTDTESVSSASTYTQSLEQLLNSPETKLEPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKLAAVAQGTVAVCCCGKYG*GKSRKQDGQSSPVPLGCCTSGK*KPL*LCKAAGNAHLYKYGGPARADPYQAL*ALQALQTGGNGLYRCGPRKQASQCSRDL*SQKT*VPW*TSEEGRRNETDVCAASKGERSHIERS*ERATGQI*AP*ETSPRRENEA*RKEKTFGRRNNCFL*KESYLRDISQPVLSGNRQQPEEGQGP*EGTRLSIRTPVH*CQSL*NQWWT*RRRESSNFL*NRSSRAQKVIITSKLY*KKTRSVL*FCCYLFYHFYIW*TATVTDIYGKVLSSTRSIHKPE*M FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33622 LIN54::SCD5 ENSG00000189308.11::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2489 FALSE NA FALSE NA LIN54 ENSG00000189308.11 protein_coding - - chr4:82909973-83012926:- chr4:82970327:- chr4:83831126-83934079:- chr4:83891480:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82680912:- chr4:83550692-83719949:- chr4:83602065:- chr4:82966007,chr4:82966014 chr4:82681596,chr4:82681600 NA NA chr4:83887160,chr4:83887167 chr4:83602749,chr4:83602753 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame TCR|523-557|1.6e-14^MSL2-CXC|528-561|0.00065^TCR|597-631|1.1e-15^MSL2-CXC|600-632|4.3e-05^TCR|697-700|0.86 none ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.11Mb] 19 7 19 6.26 ONLY_REF_SPLICE YES_LDAS 0.2497 GT 1.7232 AG 1.9656 ENST00000505397.1 1-951 ENST00000319540.9 364-993 chr4|-|[2]82970327-82970469[1]|[0]82978883-82979006[0]|[2]82984161-82984844[0]<==>chr4|-|[2]82631327-82631517[1]|[0]82636591-82636823[2]|[1]82680707-82680912[0] atggaggtggtgccagctgaggtgaatagtttgcttccagaggaaataatggacactggtataactttagtggatgatgatagtattgaggctgttattgtttcatccccaattcccatggagacagaactggaagaaattgtcaacataaattctactggtgactctacagccacgcccatttccacggaaccaatcacagtgtacagtaaccacactaaccaagttgcagtgaataccacaattactaaagcagattctaataccacagtgaaaccagcttttccaagtggccttcaaaaacttggtgctcagactcctgtgactatatcagccaatcagattattttaaacaaagtatcacagacatctgatcttaaacttggcaatcagacccttaaaccagatggacagaagttaattttaacaactttgggcaagtctggttcaccaattgttttagcactaccccatagccaactaccccaggctcagaaagttacaactcaggcccagtcaggagatgctaagttaccaccgcagcaaattaaagtagttaccattggagggaggccagaggtgaaacctgtcattggtgtctcagcattgaccccaggaagtcaactgattaatactacaactcagccctctgtgttacagacccaacagttaaaaacagtacagattgctaagaagcctcgaacgccaacctctggtccagtaatcacgaagctgatctttgcaaaaccaattaatagtaaagcagttacaggacagacaactcaagtttcaccaccagttattgcaggtagggttctttcacagtctactcccggaactccatcaaagaccataacaatatctgaaagtggtgttattggatcaactttaaattctacaacacagacaccaaataaaatagccatctcacctttgaaatcgccaaataagAATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGAAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTTGTGGTCCCCACGCTGGTGCCCTGGTACATCTGGGGAGAGAGTCTGTGGAATTCCTACTTCTTGGCCTCTATTCTCCGCTATACCATCTCACTCAACATCAGCTGGCTGGTCAACAGCGCCGCCCACATGTATGGAAACCGGCCCTATGACAAGCACATCAGCCCTCGGCAGAACCCACTCGTCGCTCTGGGTGCCATTGGTGAAGGCTTCCATAATTACCATCACACCTTTCCCTTTGACTACTCTGCGAGTGAATTTGGCTTAAATTTTAACCCAACCACCTGGTTCATTGATTTCATGTGCTGGCTGGGGCTGGCCACTGACCGCAAACGGGCAACCAAGCCGATGATCGAGGCCCGGAAGGCCAGGACTGGAGACAGCAGTGCTTGA MEVVPAEVNSLLPEEIMDTGITLVDDDSIEAVIVSSPIPMETELEEIVNINSTGDSTATPISTEPITVYSNHTNQVAVNTTITKADSNTTVKPAFPSGLQKLGAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQLPQAQKVTTQAQSGDAKLPPQQIKVVTIGGRPEVKPVIGVSALTPGSQLINTTTQPSVLQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRIQRKYYKISVVLMCFVVPTLVPWYIWGESLWNSYFLASILRYTISLNISWLVNSAAHMYGNRPYDKHISPRQNPLVALGAIGEGFHNYHHTFPFDYSASEFGLNFNPTTWFIDFMCWLGLATDRKRATKPMIEARKARTGDSSA* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE Bladder BLADDER no_match 83012792|83010484 FALSE|FALSE 82705413|82705413 FALSE|FALSE FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33624 SEC31A::SCD5 ENSG00000138674.17::ENSG00000145284.12 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2490 FALSE NA FALSE NA SEC31A ENSG00000138674.17 protein_coding - - chr4:82818509-82901166:- chr4:82870325:- chr4:83739662-83822319:- chr4:83791478:- SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82705413:- chr4:83550692-83719949:- chr4:83626566:- chr4:82867907 chr4:82722804 NA NA chr4:83789060 chr4:83643957 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame WD40|84-102|0.057^WD40|120-151|0.0018^MIOS_WD40|125-200|0.00077^WD40|170-197|0.0052^MIOS_WD40|190-253|0.0029^WD40|204-227|0.24^MIOS_WD40|241-286|0.011^WD40|251-285|0.00032^WD40|294-332|0.00036^MIOS_WD40|295-322|0.14^P3A|445-461|0.00024^Sec16_C|534-728|2.8e-09^Prp18|590-615|1.4^P3A|599-610|0.21 FA_desaturase-PARTIAL|~233-279|5.8e-19 ["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr4:0.02Mb];NEIGHBORS[19804] 12 3 12 3 ONLY_REF_SPLICE YES_LDAS 0.1483 GT 1.5301 AG 1.5628 ENST00000500777.6 1-882 ENST00000319540.9 233-993 chr4|-|[2]82870325-82870424[2]|[1]82871944-82872086[0]|[2]82874611-82874751[0]|[2]82875727-82875822[0]|[2]82878730-82878928[2]|[1]82880799-82880922[1]|[0]82881858-82881936[0]<==>chr4|-|[2]82631327-82631517[1]|[0]82636591-82636823[2]|[1]82680707-82680912[0]|[2]82705283-82705413[1] atgaagttaaaggaagtagatcgtacagccatgcaggcatggagccctgcccagaatcaccccatttacctagcaacaggaacatctgctcagcaattggatgcaacatttagtacgaatgcttcccttgagatatttgaattagacctctctgatccatccttggatatgaaatcttgtgccacattctcctcttctcacaggtaccacaagttgatttgggggccttataaaatggattccaaaggagatgtctctggagttctgattgcaggtggtgaaaatggaaatattattctctatgatccttctaaaattatagctggagacaaggaagttgtgattgcccagaatgacaagcatactggcccagtgagagccttggatgtgaacattttccagactaatctggtagcttctggtgctaatgaatctgaaatctacatatgggatctaaataattttgcaaccccaatgacaccaggagccaaaacacagccgccagaagatatcagctgcattgcatggaacagacaagttcagcatattttagcatcagccagtcccagtggccgggccactgtatgggatcttagaaaaaatgagccaatcatcaaagtcagtgaccatagtaacagaatgcattgttctgggttggcatggcatcctgatgttgctactcagatggtccttgcctccgaggatgaccggttaccagtgatccagatgtgggatcttcgatttgcttcctctccacttcgtgtcctggaaaaccatgccagggggattttggcaattgcttggagcatggcagatcctgaattgttactgagctgtggaaaagatgctaagattctctgctccaatccaaacacaggagagCCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAGAATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGAAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTTGTGGTCCCCACGCTGGTGCCCTGGTACATCTGGGGAGAGAGTCTGTGGAATTCCTACTTCTTGGCCTCTATTCTCCGCTATACCATCTCACTCAACATCAGCTGGCTGGTCAACAGCGCCGCCCACATGTATGGAAACCGGCCCTATGACAAGCACATCAGCCCTCGGCAGAACCCACTCGTCGCTCTGGGTGCCATTGGTGAAGGCTTCCATAATTACCATCACACCTTTCCCTTTGACTACTCTGCGAGTGAATTTGGCTTAAATTTTAACCCAACCACCTGGTTCATTGATTTCATGTGCTGGCTGGGGCTGGCCACTGACCGCAAACGGGCAACCAAGCCGATGATCGAGGCCCGGAAGGCCAGGACTGGAGACAGCAGTGCTTGA MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEPTSASSWPLWV*QLVPIACGATGPTGPSCL*GYFWLSPTPWLSRMTSSSGPGTTEPTTSTQRRMLTPTMPAGASSSPILGGCLFASIEMLLRRGESLTSLTCLLILWSGSRESTIRSPWCSCALWSPRWCPGTSGERVCGIPTSWPLFSAIPSHSTSAGWSTAPPTCMETGPMTSTSALGRTHSSLWVPLVKASIITITPFPLTTLRVNLA*ILTQPPGSLISCAGWGWPLTANGQPSR*SRPGRPGLETAVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33625 CYTH1::PRPSAP1 ENSG00000108669.18::ENSG00000161542.17 HCC1599 SRR8616183 SRR8639186 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2485 TRUE 4534 TRUE 1720 CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78782202:- chr17:76670130-76778379:- chr17:76778284:- PRPSAP1 ENSG00000161542.17 protein_coding - - chr17:76309478-76384521:- chr17:76332435:- chr17:74305559-74380602:- chr17:74328516:- chr17:78779820,chr17:78779825 chr17:76347114,chr17:76347116 NA NA chr17:76775902,chr17:76775907 chr17:74343195,chr17:74343197 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame UPF0128-PARTIAL|1-22~|4.6e-05^CEP170_C-PARTIAL|2-22~|1e-05^FapA-PARTIAL|9-22~|2.2e-06^CCDC90-like-PARTIAL|10-22~|2.1e-05^CCDC22_CC-PARTIAL|10-22~|4.6e-05^WEMBL-PARTIAL|11-22~|9.5e-06^FlgN-PARTIAL|12-22~|3e-06^GPS2_interact-PARTIAL|13-22~|1.1e-06^APG6_N-PARTIAL|13-22~|3.6e-06^DUF4140-PARTIAL|13-22~|4.4e-05^Caldesmon-PARTIAL|13-22~|0.00015^Halo_GVPC|14-22|1.3^HAUS5-PARTIAL|15-22~|9.1e-05^Knl1_RWD_C-PARTIAL|17-22~|0.00026^DivIC-PARTIAL|20-22~|7.4e-05 Pribosyl_synth-PARTIAL|~291-379|2.8e-101^Pribosyltran-PARTIAL|~291-335|5.9e-08 ["Mitelman","Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:2.29Mb] 10 5 10 0.5 ONLY_REF_SPLICE YES_LDAS 0.1037 GT 1.8256 AG 1.8892 ENST00000589296.5 1-22 ENST00000446526.8 291-1158 chr17|-|[0]78782202-78782223[0]<==>chr17|-|[2]76311542-76311700[0]|[2]76312870-76313016[0]|[2]76313821-76313891[1]|[0]76328717-76328862[2]|[1]76330043-76330098[0]|[2]76330551-76330666[1]|[0]76332263-76332435[2] atggaggaggacgacagctacgAGATGTGAATACAGCTGTGATGGAGTTGCTCATCATGGCTTACGCACTGAAGACTGCCTGTGCCAGGAACATTATTGGGGTCATCCCCTACTTCCCCTACAGCAAGCAGAGCAAGATGAGGAAGAGGGGTTCCATTGTGTGCAAGCTGCTAGCATCCATGCTGGCGAAAGCAGGTTTAACTCACATTATCACTATGGATCTTCATCAAAAGGAAATACAAGGCTTTTTCAGCTTTCCTGTGGACAACCTTAGAGCCTCACCTTTCCTGCTTCAGTATATCCAGGAAGAAATTCCAAATTACAGAAATGCAGTCATTGTAGCTAAGTCTCCTGATGCTGCAAAGAGGGCCCAGTCCTATGCGGAGAGACTGCGTCTGGGTTTGGCCGTCATTCACGGGGAAGCTCAGTGCACGGAACTGGACATGGACGATGGTCGTCACTCCCCGCCTATGGTCAAAAATGCTACTGTGCACCCAGGCCTGGAGTTGCCATTGATGATGGCCAAAGAGAAGCCACCGATAACTGTAGTTGGAGATGTTGGAGGCCGCATCGCAATCATCGTGGATGACATTATTGACGATGTGGAGAGTTTTGTTGCTGCCGCGGAGATCCTGAAAGAGAGAGGCGCCTATAAGATCTATGTTATGGCCACCCACGGCATCCTGTCTGCAGAGGCCCCTCGCCTGATTGAGGAGTCCTCCGTAGACGAGGTGGTGGTGACGAATACTGTCCCTCATGAGGTTCAGAAGCTGCAATGTCCCAAGATAAAGACTGTGGATATCAGTTTGATTCTTTCTGAAGCCATTCGGAGAATCCACAATGGAGAGTCCATGGCCTACCTTTTCCGAAACATCACTGTGGATGACTAG MEEDDSYEM*IQL*WSCSSWLTH*RLPVPGTLLGSSPTSPTASRAR*GRGVPLCASC*HPCWRKQV*LTLSLWIFIKRKYKAFSAFLWTTLEPHLSCFSISRKKFQITEMQSL*LSLLMLQRGPSPMRRDCVWVWPSFTGKLSARNWTWTMVVTPRLWSKMLLCTQAWSCH**WPKRSHR*L*LEMLEAASQSSWMTLLTMWRVLLLPRRS*KREAPIRSMLWPPTASCLQRPLA*LRSPP*TRWW*RILSLMRFRSCNVPR*RLWISV*FFLKPFGESTMESPWPTFSETSLWMT FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33633 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22029433:+ chr9:21994138-22128102:+ chr9:22029432:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 61 78 61 46.83 ONLY_REF_SPLICE YES_LDAS 1.2437 GT 1.9086 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33635 ENSG00000282057::DDAH1 ENSG00000282057.1::ENSG00000153904.21 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary star-fusion TRUE FALSE FALSE NA TRUE 4902 FALSE NA ENSG00000282057 ENSG00000282057.1 lncRNA - - chr1:85482281-85578250:- chr1:85577984:- chr1:85947964-86043933:- chr1:86043667:- DDAH1 ENSG00000153904.21 protein_coding - - chr1:85318481-85578363:- chr1:85358847:- chr1:85784164-86044046:- chr1:85824530:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 21 57 21 16.4 ONLY_REF_SPLICE YES_LDAS 0.4314 GT 1.8062 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33636 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21854870:+ chr9:21802635-21937650:+ chr9:21854869:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22029433:+ chr9:21994138-22128102:+ chr9:22029432:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 20 39 20 5.06 ONLY_REF_SPLICE YES_LDAS 0.2891 GT 1.5219 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33637 MTAP::CDKN2B-AS1 ENSG00000099810.21::ENSG00000240498.9 LOXIMVI SRR8616186 SRR8652102 SKIN malignant_melanoma primary star-fusion TRUE TRUE FALSE NA TRUE 4563 TRUE 1729 MTAP ENSG00000099810.21 protein_coding + + chr9:21802636-21937651:+ chr9:21859425:+ chr9:21802635-21937650:+ chr9:21859424:+ CDKN2B-AS1 ENSG00000240498.9 lncRNA + + chr9:21994139-22128103:+ chr9:22012128:+ chr9:21994138-22128102:+ chr9:22012127:+ chr9:21861865,chr9:21861865 chr9:21995595,chr9:21995592 NA NA chr9:21861864,chr9:21861864 chr9:21995594,chr9:21995591 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr9:0.06Mb];NEIGHBORS[57127] 16 96 16 44.1 ONLY_REF_SPLICE YES_LDAS 0.6931 GT 1.9086 AG 1.7819 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33649 PMM2::ABAT ENSG00000140650.13::ENSG00000183044.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2495 FALSE NA FALSE NA PMM2 ENSG00000140650.13 protein_coding + + chr16:8788823-8862534:+ chr16:8813106:+ chr16:8882680-8956391:+ chr16:8906963:+ ABAT ENSG00000183044.12 protein_coding + + chr16:8674596-8784575:+ chr16:8764738:+ chr16:8768453-8878432:+ chr16:8858595:+ chr16:8845194,chr16:8845192 chr16:8764698,chr16:8764693 NA NA chr16:8939051,chr16:8939049 chr16:8858555,chr16:8858550 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame S6PP|8-112|6.2e-06^Hydrolase|8-51|1.4e-05^HAD_2|9-18|0.025^Hydrolase_3|10-209|3.5e-13^HAD_2|23-57|0.0022^PMM|28-214|4.7e-104^T4_Rnl2_C|40-65|0.0023^T4_Rnl2_C|85-97|1.6^HAD_2|135-158|0.94^S6PP|147-196|0.097^T4_Rnl2_C|147-166|0.049^Hydrolase|184-209|0.66 Aminotran_3-PARTIAL|~448-460|1.2e-125 ["Klijn_CellLines","DEEPEST2019","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.00Mb];LOCAL_REARRANGEMENT:+:[4248] 41 28 41 28 ONLY_REF_SPLICE YES_LDAS 0.8505 GT 1.7968 AG 1.8892 ENST00000682008.1 1-639 ENST00000569156.5 448-1548 chr16|+|[0]8797883-8797948[2]|[0]8801799-8801910[0]|[1]8804767-8804843[2]|[0]8806316-8806407[1]|[2]8811079-8811178[2]|[0]8811638-8811713[0]|[1]8812991-8813106[2]<==>chr16|+|[0]8764738-8764830[2]|[0]8766208-8766270[2]|[0]8768193-8768256[0]|[1]8768825-8768973[2]|[0]8772780-8772917[2]|[0]8774890-8775057[2]|[0]8776344-8776490[2]|[0]8779479-8779590[0]|[1]8781250-8781416[2] atggcagcgcctggcccagcgctctgcctcttcgacgtggatgggaccctcaccgccccgcggcagaaaattaccaaagaaatggatgacttcctacaaaaattgaggcagaagatcaaaatcggagtggtaggcggatcggactttgagaaagtgcaggagcaactgggaaatgatgtggttgaaaaatacgattatgtgtttccagaaaatggcttggtagcatacaaagatgggaaactcttgtgtagacagaatattcaaagtcatctgggtgaggccctaatccaagatttaatcaactactgtctgagctacattgcgaaaattaaactcccgaagaagaggggtactttcattgaattccgaaatgggatgttaaacgtgtcccctattggaagaagctgcagccaagaagaacgcattgagttctacgaactcgataaaaaagaaaatataagacaaaagtttgtagcagatctacggaaagagtttgctggaaaaggcctcacgttttccataggaggccagatcagctttgatgtctttcctgatggatgggacaagagatactgtctgcgacatgtggaaaatgacggttataagaccatttatttctttggagacaaaactatgccaGTGGCTCCCAAAGGGATGTCCCAGCTCATCACCATGGCCTGCGGCTCCTGCTCCAATGAAAACGCCTTAAAGACCATCTTCATGTGGTACCGGAGCAAGGAAAGAGGGCAGAGGGGCTTCTCCCAGGAGGAGCTGGAGACGTGCATGATTAACCAGGCCCCTGGCTGCCCCGACTACAGCATCCTCTCCTTCATGGGCGCGTTCCATGGGAGGACCATGGGTTGCTTAGCGACCACGCACTCTAAAGCCATTCACAAGATCGACATCCCTTCCTTTGACTGGCCCATCGCACCGTTCCCACGGCTGAAATACCCTCTGGAAGAGTTTGTGAAAGAGAACCAACAGGAGGAGGCCCGCTGTCTGGAAGAGGTGGAGGATCTGATTGTGAAATATCGGAAAAAGAAGAAGACGGTGGCCGGGATCATCGTGGAGCCCATCCAGTCCGAGGGTGGAGACAACCACGCATCCGATGACTTCTTTCGGAAGCTGAGAGACATCGCCAGGAAGCATGGCTGCGCCTTCTTGGTGGACGAGGTCCAGACCGGAGGAGGCTGCACGGGCAAGTTCTGGGCCCATGAGCACTGGGGCCTGGATGACCCAGCAGACGTGATGACCTTCAGCAAGAAGATGATGACTGGGGGCTTCTTCCACAAGGAGGAGTTCAGGCCTAATGCTCCCTACCGGATCTTCAACACCTGGCTGGGGGACCCGTCCAAGAACCTGTTGCTGGCTGAGGTCATCAACATCATCAAGCGGGAGGACCTGCTAAATAATGCAGCCCATGCCGGGAAGGCCCTGCTCACAGGACTGCTGGACCTCCAGGCCCGGTACCCCCAGTTCATCAGCAGGGTGAGAGGACGAGGCACCTTTTGCTCCTTCGATACTCCCGATGATTCCATACGGAATAAGCTCATTTTAATTGCCAGAAACAAAGCTCTCCCAGCATGTGACTTTGAGAAACCACGCTCCTCACCTACCTCCTGCCTCTTTCAGGTGTGGTGTTGGGTGGCTGTGGTGACAAATCCATTCGTTTCCGTCCCACGCTGGTCTTCAGGGATCACCACGCTCACCTGTTCCTCAATATTTTCAGTGACATCTTAG MAAPGPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPVAPKGMSQLITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKALPACDFEKPRSSPTSCLFQVWCWVAVVTNPFVSVPRWSSGITTLTCSSIFSVTS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE unknown unknown TRUE Sarcoma BONE_AND_SOFT_TISSUE no_match 8905570|8895767 FALSE|FALSE 8829556|8829556 FALSE|FALSE PARTIALLY CDS-5UTR FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33653 SLCO1A2::C2CD5 ENSG00000084453.17::ENSG00000111731.13 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2497 FALSE NA FALSE NA SLCO1A2 ENSG00000084453.17 protein_coding - - chr12:21264600-21419594:- chr12:21292164:- chr12:21417534-21572528:- chr12:21445098:- C2CD5 ENSG00000111731.13 protein_coding - - chr12:22448583-22544546:- chr12:22493337:- chr12:22601517-22697480:- chr12:22646271:- chr12:21277259,chr12:21277263 chr12:22505700,chr12:22505701 NA NA chr12:21430193,chr12:21430197 chr12:22658634,chr12:22658635 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame OATP|21-597|3e-187^MFS_1|30-405|6.1e-29^ASFV_L11L|70-130|3.6e-05^Kazal_1|130-137|4.6^ASFV_L11L|378-401|1.6^Kazal_2|440-486|1.7e-15^Kazal_1|444-471|3.1e-07^MFS_1|512-571|0.015 none ["C2CD5:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr12:1.03Mb] 19 9 19 9 ONLY_REF_SPLICE YES_LDAS 0.3451 GT 1.7968 AG 1.7968 ENST00000307378.10 1-1610 ENST00000446597.6 1148-3156 chr12|-|[1]21292164-21292336[0]|[2]21293945-21294110[2]|[1]21295597-21295792[1]|[0]21297404-21297568[1]|[0]21300348-21300569[1]|[0]21301171-21301269[1]|[0]21304427-21304573[1]|[0]21306882-21306988[2]|[1]21314549-21314681[1]|[0]21318782-21318923[0]|[2]21334588-21334647[0]<==>chr12|-|[2]22449760-22449891[0]|[2]22453896-22454042[0]|[2]22456971-22457161[1]|[0]22458484-22458585[1]|[0]22459492-22459542[1]|[0]22469709-22469795[1]|[0]22470824-22470911[0]|[2]22471399-22471488[0]|[2]22471967-22472065[0]|[2]22472286-22472347[1]|[0]22472744-22472807[0]|[2]22474751-22474891[0]|[2]22478313-22478477[0]|[2]22482557-22482743[2]|[1]22484697-22484888[2]|[1]22490123-22490218[2]|[1]22493223-22493337[1] atgggagaaactgagaaaagaattgaaacccatagaataagatgtctttccaagttgaagatgtttctgttggcaataacatgtgcatttgtatccaaaacactgtctggatcttatatgaattccatgctcacacaaatagagagacaattcaacatcccaacatctctagttggattcattaatggaagctttgagattggaaatcttttgttgattatatttgtgagttattttggaaccaaactgcatagacctataatgattggcattggatgtgtggttatgggcttaggctgtttcttaaaatcactacctcatttcctcatgaaccaatatgaatatgaatctacagtttcagtttcaggcaacttgtcctcaaacagtttcttgtgtatggaaaatggaacccagattttaagaccaacgcaggatccatcagagtgtacaaaggaagttaaatcattaatgtgggtgtacgtcctagtaggcaatattgtacgtggaatgggtgaaactcccatcctgcctttgggtatttcctatatagaagattttgccaaatttgaaaattctcctttatatattgggcttgtagaaacaggagctattattggtcctttgattggacttttgttggcatcattctgtgcaaatgtttatgttgacactggatttgtgaacacagatgatctgatcataactcccactgacactcgttgggtcggtgcatggtggtttggctttctgatttgtgcaggagttaacgtgctcactgccattccttttttctttttgcccaacacacttccaaaggaaggactagagactaatgctgacatcattaaaaatgaaaatgaagacaaacaaaaagaagaggtcaagaaggaaaaatatggaatcactaaagattttctacctttcatgaaaagtctttcctgcaatccaatttatatgcttttcatacttgtaagtgtgatacagttcaatgcattcgttaacatgatctccttcatgcctaaatacctagaacagcaatatggaatatcatcttcagatgcaatctttctaatgggtatttataacttacctccaatatgtattggatatataattggtggtttaattatgaagaagttcaagattactgtcaaacaagctgcccacataggatgttggttatccttacttgagtatcttctctattttttatcttttctcatgacttgtgaaaattcttcagttgttggaataaatacctcttatgaaggaattccacaagatttatatgtggaaaatgacatctttgctgattgcaatgtggattgcaactgtccatctaaaatatgggatcctgtgtgtggaaacaatggcttgtcatatctgtcagcttgtcttgctggttgtgagacatccattggaacgggaataaacatggtgttccaaaattgcagctgtattcaaacatcaggaaattcatctgcagttcttgggctgtgcgacaaaggacctgactgttccttgatgctccagtacttcctaatcttgtcagcgatgagcagtttcatttattctttggctgccatacctggatatatggttctcttgagATGAACCAGAAACTCGAGATGCATGGTGGGCAGAAATCAGACAAGAAATAAAATCACATGCTAAAGCATTAGGCTGTCATGCTGTAGTGGGCTACAGTGAATCAACTAGCATCTGTGAAGAGGTCTGCATTTTATCTGCATCTGGCACAGCGGCTGTACTGAATCCTAGATTTCTGCAGGATGGCACCGTGGAAGGCTGTTTGGAACAGAGGCTTGAAGAAAATTTGCCTACACGTTGTGGATTTTGTCATATACCATATGATGAACTGAATATGCCATTTCCAGCTCATCTCACATATTGCTATAACTGCAGGAAACAAAAAGTTCCTGATGTTCTGTTTACAACTATAGACCTCCCAACAGATGCAACAGTTATTGGAAAAGGTTGTCTTATTCAAGCAAGGTTATGTCGCTTAAAAAAGAAAGCACAGGCAGAAGCAAATGCTACAGCTATCAGTAATCTCTTGCCATTTATGGAATATGAAGTGCATACTCAGCTAATGAATAAACTAAAACTCAAAGGAATGAATGCTTTGTTTGGACTAAGAATTCAGATCACAGTGGGTGAAAATATGTTGATGGGCTTAGCGTCTGCCACAGGTGTGTATTTAGCAGCTTTACCAACTCCTGGTGGTATTCAGATTGCTGGGAAGACTCCTAATGATGGCTCATATGAACAACACATCTCTCATATGCAGAAGAAGATAAATGACACAATTGCTAAAAACAAAGAGTTATATGAAATCAATCCTCCAGAGATATCTGAAGAGATTATAGGATCACCCATCCCAGAACCTAGGCAACGCTCAAGACTTCTAAGATCTCAATCAGAAAGCTCGGATGAAGTTACAGAATTAGACCTTTCACATGGGAAAAAAGATGCTTTTGTTTTGGAGATTGATGACACAGATGCCATGGAAGATGTCCATTCTCTACTTACTGATGTTCCTCCTCCTTCAGGCTTTTATAGTTGTAATACAGAAATTATGCCCGGTATAAATAATTGGACCTCTGAAATACAGATGTTCACTTCAGTAAGAGTAATCAGATTAAGCAGCCTCAACCTGACTAATCAAGCTCTCAATAAGAACTTTAATGATCTCTGTGAAAATTTGCTCAAGAGCCTGTACTTTAAACTACGATCTATGATCCCCTGCTGCCTTTGCCATGTAAATTTTACAGTATCTCTGCCTGAAGATGAATTAATTCAGGTTACAGTCACGGCAGTCGCAATCACTTTTGACAAAAATCAGGCTTTACAAACCACAAAAACCCCTGTTGAAAAGTCATTGCAAAGAGCCTCAACAGATAATGAAGAACTTTTACAATTTCCACTGGAACTGTGTTCAGATTCACTTCCTTCTCATCCTTTTCCACCAGCTAAAGAACACCTGGAGAGTGCAAGTTCTAACTCAGGTATACCAGCTGCACAGAGAGCAACGTCAGTTGATTACAGTTCCTTTGCAGACAGATGCAGCAGCTGGATAGAGCTCATTAAACTGAAAGCTCAGACCATAAGGCGTGGATCAATTAAGACAACCATGACAGTTGAAAAAGCAAGTCCAGTGGGTGATGGAAATTTCCGGAATCGTTCTGCTCCACCTTGTGCAAATTCCACAGTTGGGGTTGTTAAGATGACACCTCTTTCTTTTATTCCTGGAGCAAAAATAACTAAGTATCTTGGGATAATTAACATGTTTTTTATTCGAGAGACTACTTCTCTTCGGGAGGAAGGAGGAGTCAGTGGTTTTCTCCATGCTTTTATTGCTGAAGTGTTTGCAATGGTGAGAGCTCATGTTGCTGCATTAGGAGGGAATGCTGTTGTCTCCTACATAATGAAGCAGTGTGTCTTCATGGAGAATCCAAATAAAAACCAGGCACAGTGTCTTATAAATGTAAGTGGTGATGCAGTGGTTTTTGTTCGTGAATCTGACTTAGAAGTGGTGTCATCTCAGCAACCTACTACCAACTGCCAGTCATCATGTACTGAAGGCGAAGTTACAACCTGA MGETEKRIETHRIRCLSKLKMFLLAITCAFVSKTLSGSYMNSMLTQIERQFNIPTSLVGFINGSFEIGNLLLIIFVSYFGTKLHRPIMIGIGCVVMGLGCFLKSLPHFLMNQYEYESTVSVSGNLSSNSFLCMENGTQILRPTQDPSECTKEVKSLMWVYVLVGNIVRGMGETPILPLGISYIEDFAKFENSPLYIGLVETGAIIGPLIGLLLASFCANVYVDTGFVNTDDLIITPTDTRWVGAWWFGFLICAGVNVLTAIPFFFLPNTLPKEGLETNADIIKNENEDKQKEEVKKEKYGITKDFLPFMKSLSCNPIYMLFILVSVIQFNAFVNMISFMPKYLEQQYGISSSDAIFLMGIYNLPPICIGYIIGGLIMKKFKITVKQAAHIGCWLSLLEYLLYFLSFLMTCENSSVVGINTSYEGIPQDLYVENDIFADCNVDCNCPSKIWDPVCGNNGLSYLSACLAGCETSIGTGINMVFQNCSCIQTSGNSSAVLGLCDKGPDCSLMLQYFLILSAMSSFIYSLAAIPGYMVLLR*TRNSRCMVGRNQTRNKITC*SIRLSCCSGLQ*IN*HL*RGLHFICIWHSGCTES*ISAGWHRGRLFGTEA*RKFAYTLWILSYTI**TEYAISSSSHILL*LQETKSS*CSVYNYRPPNRCNSYWKRLSYSSKVMSLKKESTGRSKCYSYQ*SLAIYGI*SAYSANE*TKTQRNECFVWTKNSDHSG*KYVDGLSVCHRCVFSSFTNSWWYSDCWEDS**WLI*TTHLSYAEEDK*HNC*KQRVI*NQSSRDI*RDYRITHPRT*ATLKTSKISIRKLG*SYRIRPFTWEKRCFCFGD**HRCHGRCPFSTY*CSSSFRLL*L*YRNYARYK*LDL*NTDVHFSKSNQIKQPQPD*SSSQ*EL**SL*KFAQEPVL*TTIYDPLLPLPCKFYSISA*R*INSGYSHGSRNHF*QKSGFTNHKNPC*KVIAKSLNR**RTFTISTGTVFRFTSFSSFSTS*RTPGECKF*LRYTSCTESNVS*LQFLCRQMQQLDRAH*TESSDHKAWIN*DNHDS*KSKSSG*WKFPESFCSTLCKFHSWGC*DDTSFFYSWSKNN*VSWDN*HVFYSRDYFSSGGRRSQWFSPCFYC*SVCNGESSCCCIRRECCCLLHNEAVCLHGESK*KPGTVSYKCKW*CSGFCS*I*LRSGVISATYYQLPVIMY*RRSYNL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33654 DNMT1::CHASERR ENSG00000130816.17::ENSG00000272888.8 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2504 FALSE NA FALSE NA DNMT1 ENSG00000130816.17 protein_coding - - chr19:10133342-10231286:- chr19:10231204:- chr19:10244018-10341962:- chr19:10341880:- CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92897724:+ chr15:93362770-93442931:+ chr15:93440954:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DNMT1:Oncogene"] 18 14 18 8.13 ONLY_REF_SPLICE YES_LDAS 0.3221 GT 1.7056 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33657 MYO3A::SCD5 ENSG00000095777.17::ENSG00000145284.12 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE FALSE TRUE 2496 FALSE NA FALSE NA MYO3A ENSG00000095777.17 protein_coding + + chr10:25934229-26212532:+ chr10:25955008:+ chr10:26223158-26501461:+ chr10:26243937:+ SCD5 ENSG00000145284.12 protein_coding - - chr4:82629539-82798796:- chr4:82705413:- chr4:83550692-83719949:- chr4:83626566:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|22-287|4.6e-65^PK_Tyr_Ser-Thr|23-283|5.4e-48^ABC1|26-74|0.028^Kinase-like|26-50|3.2^APH|28-110|0.011^ABC1|97-179|4.4e-07^Kdo|122-177|0.00032^Pkinase_fungal|131-198|7.2e-09^Kinase-like|139-219|1.2e-07^APH|147-170|0.0032 FA_desaturase-PARTIAL|~233-279|5.8e-19 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr10--chr4] 14 8 14 7.84 ONLY_REF_SPLICE YES_LDAS 0.2692 GT 1.5628 AG 1.5628 ENST00000647478.1 1-303 ENST00000319540.9 233-993 chr10|+|[0]25952111-25952278[2]|[0]25954874-25955008[2]<==>chr4|-|[2]82631327-82631517[1]|[0]82636591-82636823[2]|[1]82680707-82680912[0]|[2]82705283-82705413[1] atgtttccattaattggaaaaacaatcatctttgataactttcctgatccttctgatacatgggaaatcactgagacaattggcaaaggaacttatgggaaagtttttaaagtattgaataagaaaaatggccaaaaagcagcagtcaaaattcttgatccaattcacgatattgacgaagagattgaagcagaatataacatcttaaaagcactttctgaccaccctaatgtggtcagattctatgggatatactttaagaaggataaagtaaatggagacaagctgtggttggttcttgagCCTACTTCTGCTTCCTCCTGGCCGCTCTGGGTGTGACAGCTGGTGCCCATCGCTTGTGGAGCCACAGGTCCTACCGGGCCAAGCTGCCTCTGAGGATATTTCTGGCTGTCGCCAACTCCATGGCTTTCCAGAATGACATCTTCGAGTGGTCCAGGGACCACCGAGCCCACCACAAGTACTCAGAGACGGATGCTGACCCCCACAATGCCCGCCGGGGCTTCTTCTTCTCCCATATTGGGTGGCTGTTTGTTCGCAAGCATCGAGATGTTATTGAGAAGGGGAGAAAGCTTGACGTCACTGACCTGCTTGCTGATCCTGTGGTCCGGATCCAGAGAAAGTACTATAAGATCTCCGTGGTGCTCATGTGCTTTGTGGTCCCCACGCTGGTGCCCTGGTACATCTGGGGAGAGAGTCTGTGGAATTCCTACTTCTTGGCCTCTATTCTCCGCTATACCATCTCACTCAACATCAGCTGGCTGGTCAACAGCGCCGCCCACATGTATGGAAACCGGCCCTATGACAAGCACATCAGCCCTCGGCAGAACCCACTCGTCGCTCTGGGTGCCATTGGTGAAGGCTTCCATAATTACCATCACACCTTTCCCTTTGACTACTCTGCGAGTGAATTTGGCTTAAATTTTAACCCAACCACCTGGTTCATTGATTTCATGTGCTGGCTGGGGCTGGCCACTGACCGCAAACGGGCAACCAAGCCGATGATCGAGGCCCGGAAGGCCAGGACTGGAGACAGCAGTGCTTGA MFPLIGKTIIFDNFPDPSDTWEITETIGKGTYGKVFKVLNKKNGQKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVRFYGIYFKKDKVNGDKLWLVLEPTSASSWPLWV*QLVPIACGATGPTGPSCL*GYFWLSPTPWLSRMTSSSGPGTTEPTTSTQRRMLTPTMPAGASSSPILGGCLFASIEMLLRRGESLTSLTCLLILWSGSRESTIRSPWCSCALWSPRWCPGTSGERVCGIPTSWPLFSAIPSHSTSAGWSTAPPTCMETGPMTSTSALGRTHSSLWVPLVKASIITITPFPLTTLRVNLA*ILTQPPGSLISCAGWGWPLTANGQPSR*SRPGRPGLETAVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Myosin-IIIa STE STE20 NinaC Q8NEV4 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33659 S1PR2::CHASERR ENSG00000267534.4::ENSG00000272888.8 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA S1PR2 ENSG00000267534.4 protein_coding - - chr19:10221433-10231331:- chr19:10224804:- chr19:10332109-10342007:- chr19:10335480:- CHASERR ENSG00000272888.8 lncRNA + + chr15:92819540-92899701:+ chr15:92897724:+ chr15:93362770-93442931:+ chr15:93440954:+ chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684,chr19:10224684 chr15:92896609,chr15:92896576,chr15:92896603,chr15:92896593,chr15:92896588 NA NA chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360,chr19:10335360 chr15:93439839,chr15:93439806,chr15:93439833,chr15:93439823,chr15:93439818 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 12 15 12 6.87 INCL_NON_REF_SPLICE YES_LDAS 0.2326 GT 1.6729 AG 1.9219 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33664 PPP4R3B::RTN4 ENSG00000275052.5::ENSG00000115310.19 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2501 FALSE NA FALSE NA PPP4R3B ENSG00000275052.5 protein_coding - - chr2:55547292-55618880:- chr2:55603978:- chr2:55774428-55846015:- chr2:55831114:- RTN4 ENSG00000115310.19 protein_coding - - chr2:54972187-55112621:- chr2:54987698:- chr2:55199323-55339757:- chr2:55214834:- chr2:55603361,chr2:55603369 chr2:54991268,chr2:54991273 NA NA chr2:55830497,chr2:55830505 chr2:55218404,chr2:55218409 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Ran_BP1|6-72|2.7e-06^WH1|7-97|2.3e-07^PP4R3-PARTIAL|168-297~|1.2e-85 none ["RTN4:Oncogene"];["CCLE_StarF2019"] 9 1 9 1 ONLY_REF_SPLICE YES_LDAS 0.1232 GT 1.7465 AG 1.7465 ENST00000616288.4 1-297 ENST00000337526.11 3014-3579 chr2|-|[2]55603978-55604076[0]|[2]55615451-55615506[1]|[0]55617144-55617285[0]<==>chr2|-|[2]54973156-54973198[2]|[1]54973563-54973621[0]|[2]54973821-54973867[1]|[0]54974695-54974764[0]|[2]54982515-54982653[2]|[1]54987491-54987698[1] atgtcggatacgcggcggcgagtgaaggtctataccctgaacgaagaccggcaatgggacgaccgaggcaccgggcacgtctcctccacttacgtggaggagctcaaggggatgtcgctgctggttcgggcagagtccgacggatcactactcttggaatcaaagataaatccaaatactgcatatcagaaacaacaggatacattaattgtttggtcagaagcagagaactatgatttggctctgagttttcaggagaaagctggctgtgatgagatctgggaaaaaatttgtcagTTGTTGACCTCCTGTACTGGAGAGACATTAAGAAGACTGGAGTGGTGTTTGGTGCCAGCCTATTCCTGCTGCTTTCATTGACAGTATTCAGCATTGTGAGCGTAACAGCCTACATTGCCTTGGCCCTGCTCTCTGTGACCATCAGCTTTAGGATATACAAGGGTGTGATCCAAGCTATCCAGAAATCAGATGAAGGCCACCCATTCAGGGCATATCTGGAATCTGAAGTTGCTATATCTGAGGAGTTGGTTCAGAAGTACAGTAATTCTGCTCTTGGTCATGTGAACTGCACGATAAAGGAACTCAGGCGCCTCTTCTTAGTTGATGATTTAGTTGATTCTCTGAAGTTTGCAGTGTTGATGTGGGTATTTACCTATGTTGGTGCCTTGTTTAATGGTCTGACACTACTGATTTTGGCTCTCATTTCACTCTTCAGTGTTCCTGTTATTTATGAACGGCATCAGGCACAGATAGATCATTATCTAGGACTTGCAAATAAGAATGTTAAAGATGCTATGGCTAAAATCCAAGCAAAAATCCCTGGATTGAAGCGCAAAGCTGAATGA MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQLLTSCTGETLRRLEWCLVPAYSCCFH*QYSAL*A*QPTLPWPCSL*PSALGYTRV*SKLSRNQMKATHSGHIWNLKLLYLRSWFRSTVILLLVM*TAR*RNSGASS*LMI*LIL*SLQC*CGYLPMLVPCLMV*HY*FWLSFHSSVFLLFMNGIRHR*III*DLQIRMLKMLWLKSKQKSLD*SAKLN FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33668 SYN3::LARGE1 ENSG00000185666.16::ENSG00000133424.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2500 FALSE NA FALSE NA SYN3 ENSG00000185666.16 protein_coding - - chr22:32507820-33058381:- chr22:32980645:- chr22:32903807-33454367:- chr22:33376630:- LARGE1 ENSG00000133424.22 protein_coding - - chr22:33162226-33922841:- chr22:33166832:- chr22:33558212-34318829:- chr22:33562818:- chr22:32935073,chr22:32935077 chr22:33229640,chr22:33229641 NA NA chr22:33331058,chr22:33331062 chr22:33625626,chr22:33625627 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Synapsin_N|1-29|9.5e-22^Coleoptericin|33-74|2.3e-06^Synapsin|89-123|5.2e-16 none ["CCLE_StarF2019"] 7 5 7 5 ONLY_REF_SPLICE YES_LDAS 0.1479 GT 1.8892 AG 1.8295 ENST00000441821.5 1-369 ENST00000610186.6 1878-1947 chr22|-|[2]32980645-32980702[2]|[1]33006352-33006662[0]<==>chr22|-|[2]33166763-33166832[2] atgaatttcctccggcgacgtctctctgacagcagcttcatggccaacctgcctaatggctatatgacggacctgcaacgcccagatagctccaccagctcacctgcttcccccgccatggagaggaggcacccccagcccctggctgcctccttctcctctccaggatccagcctttttagctccctctccagtgccatgaagcaggcccctcaggccacctcaggactgatggagcctccaggtccctccacgcccattgttcaaagacccaggatcctgttggtgatcgatgatgcccatacagactggtcgaagtatttccatgggaagaaggtgaatggagagattgagatccgagtggagcagCTTTGATTTTAGCCAGACCCTATCTCCCATCATCAGCTGCAAGACGACAGTTCCAAACACATGCCTATAA MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRHPQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQL*F*PDPISHHQLQDDSSKHMPI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33669 ZNF443::CACNA1A ENSG00000180855.16::ENSG00000141837.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2499 FALSE NA FALSE NA ZNF443 ENSG00000180855.16 protein_coding - - chr19:12429706-12441021:- chr19:12430900:- chr19:12540520-12551835:- chr19:12541714:- CACNA1A ENSG00000141837.22 protein_coding - - chr19:13206442-13633025:- chr19:13286966:- chr19:13317256-13743839:- chr19:13397780:- chr19:12430586,chr19:12430586,chr19:12430594 chr19:13290160,chr19:13290156,chr19:13290165 NA NA chr19:12541400,chr19:12541400,chr19:12541408 chr19:13400974,chr19:13400970,chr19:13400979 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame KRAB|3-42|1.7e-21^Zn-ribbon_8|78-89|4.1^zf-H2C2_2|127-138|0.16^zf-C2H2|147-163|0.09^zf-C2H2_4|147-163|0.44^Zn_ribbon_SprT|148-176|0.098^zf-C2H2_jaz|149-161|0.89^zf-met|150-161|6.5^zf-C2H2_3rep|153-188|0.0051^zf-H2C2_2|156-180|1.3e-10^DUF3741|161-174|1.9^zf-trcl|167-178|0.062^zf-C2H2|169-188|5.5e-09^zf-C2H2_6|169-189|8e-07^zf-C2H2_jaz|169-188|9.1e-05^Zn-ribbon_8|169-181|0.0047^zf_UBZ|169-181|0.0044^zf-met|169-188|0.00027^zf-C2H2_4|170-189|4.2e-07^XPA_N|170-179|0.019^zf-C2H2_11|171-188|1.8e-06^Zap1_zf1|172-188|1.1e-05^zf-H2C2_2|183-206|3.2e-08^Zn_ribbon_SprT|185-204|0.035^zf-trcl|194-208|0.012^zf-C2H2_3rep|196-218|1.4^zf-C2H2|197-219|5.9e-06^zf-C2H2_4|197-219|0.00087^zf-C2H2_6|197-206|0.014^zf-C2H2_jaz|197-218|0.013^zf-C2H2_11|197-206|0.27^Zn-ribbon_8|197-232|0.023^zf_UBZ|197-205|1.4^zf-met|197-215|0.28^XPA_N|198-206|0.16^MASE2|201-229|0.011^zf-H2C2_2|214-235|1.2e-10^Soc|216-239|0.14^Zn_ribbon_SprT|217-233|0.24^DUF3741|217-234|0.79^zf-C2H2_3rep|220-243|1.7^zf-trcl|223-238|0.0083^zf-C2H2|225-247|1.2e-06^zf-C2H2_4|225-247|1.4e-05^zf-C2H2_6|225-237|0.0011^zf-C2H2_jaz|225-246|0.039^Zn-ribbon_8|225-260|0.29^zf_UBZ|225-235|0.078^Zn_ribbon_SprT|225-259|0.15^zf-met|225-246|6.7^zf-C2H2_11|226-243|1.3^XPA_N|226-241|0.086^Zap1_zf1|228-235|4.2^zf-H2C2_2|242-262|5.6e-11^Soc|244-268|0.011^DUF3741|245-261|1.1^zf-trcl|251-289|0.013^zf-C2H2|253-275|2.1e-06^zf-C2H2_4|253-275|2e-05^zf-C2H2_6|253-266|0.0005^zf-C2H2_jaz|253-272|0.096^Zn-ribbon_8|253-288|1.2^zf_UBZ|253-264|0.029^Zn_ribbon_SprT|253-287|0.049^zf-met|253-274|3^XPA_N|254-269|0.061^zf-C2H2_11|255-259|4.4^Zap1_zf1|256-263|5.5^zf-H2C2_2|270-290|5.6e-11^Soc|273-294|5^DUF3741|273-289|1.7^zf-C2H2|281-303|3e-05^zf-C2H2_4|281-303|0.00013^zf-C2H2_6|281-291|0.0011^zf-C2H2_jaz|281-302|0.031^zf-C2H2_11|281-288|1^Zn-ribbon_8|281-290|0.096^zf_UBZ|281-293|0.024^XPA_N|282-293|0.0046^zf-met|282-303|1.8^Zap1_zf1|284-292|1.8^zf-C2H2_3rep|298-328|0.0074^zf-H2C2_2|299-319|8.2e-11^Zn_ribbon_SprT|301-318|0.032^DUF3741|302-314|5.5^zf-trcl|307-318|0.0077^zf-C2H2|309-331|2.7e-08^zf-C2H2_4|309-331|2.5e-06^zf-C2H2_6|309-333|0.0014^zf-C2H2_jaz|309-331|0.0025^Zn-ribbon_8|309-324|0.0024^zf_UBZ|309-328|0.0003^Zn_ribbon_SprT|309-345|0.0071^zf-met|309-328|3.9^zf-C2H2_11|310-327|5.3e-06^XPA_N|310-321|0.021^Zap1_zf1|312-327|0.15^zf-H2C2_2|323-347|1.4e-09^zf-C2H2_3rep|325-355|0.029^zf-trcl|335-370|0.0038^zf-C2H2|337-359|1.1e-06^zf-C2H2_4|337-359|2.7e-05^zf-C2H2_6|337-359|0.0047^zf-C2H2_jaz|337-356|0.0051^Zn-ribbon_8|337-372|0.0013^zf_UBZ|337-353|0.0072^Zn_ribbon_SprT|337-373|0.0012^zf-C2H2_11|338-356|0.0016^XPA_N|339-347|0.099^Zap1_zf1|341-358|0.021^zf-H2C2_2|352-376|2.7e-10^zf-C2H2|365-387|3.6e-06^zf-C2H2_4|365-387|8.9e-07^zf-C2H2_6|365-387|0.0026^zf-C2H2_jaz|365-386|0.0003^zf-C2H2_11|365-383|0.25^zf_UBZ|365-384|0.032^zf-C2H2_3rep|365-384|0.98^Zn-ribbon_8|366-401|0.031^XPA_N|366-374|2.4^zf-met|367-387|0.00011^Zap1_zf1|370-383|0.42^zf-H2C2_2|379-401|9.5e-12^Zn_ribbon_SprT|385-404|0.014^DUF3741|385-402|2.3^zf-trcl|391-400|0.21^zf-C2H2|393-415|1.3e-07^zf-C2H2_4|393-415|0.00014^zf-C2H2_6|393-413|0.0079^zf-C2H2_jaz|393-412|0.017^Zn-ribbon_8|393-428|0.0011^zf_UBZ|393-411|0.009^Zn_ribbon_SprT|393-431|0.00017^zf-met|393-412|0.026^zf-C2H2_11|394-412|0.55^XPA_N|394-402|0.36^zf-H2C2_2|408-432|6.8e-11^zf-trcl|418-458|8.7e-06^zf-C2H2_3rep|418-468|1.3^zf-C2H2|421-443|9.8e-08^zf-C2H2_4|421-443|3.9e-05^zf-C2H2_6|421-432|0.00036^zf-C2H2_jaz|421-442|0.00028^zf-C2H2_11|421-439|0.24^Zn_ribbon_SprT|421-459|0.00028^Zn-ribbon_8|422-456|0.017^zf_UBZ|422-429|4.5^XPA_N|422-430|0.2^zf-met|423-443|0.0025^MASE2|425-453|0.1^zf-H2C2_2|437-458|4e-10^zf-C2H2|449-471|2.3e-07^zf-C2H2_4|449-471|1.8e-05^zf-C2H2_6|449-471|0.0008^zf-C2H2_jaz|449-470|0.062^zf-C2H2_11|449-467|0.00017^Zn-ribbon_8|449-459|0.017^zf_UBZ|449-460|0.039^Zn_ribbon_SprT|449-480|0.0076^XPA_N|450-457|0.52^Zap1_zf1|452-467|2.1^zf-H2C2_2|463-481|1.5e-08^zf-C2H2_4|478-498|4.5^zf-C2H2|482-498|1^zf-C2H2_3rep|489-524|0.012^zf-C2H2_jaz|490-497|5.8^zf-H2C2_2|491-515|1.6e-11^DUF3741|493-509|0.38^Soc|499-517|9.5^zf-trcl|502-540|0.76^zf-C2H2|504-526|2.2e-08^zf-C2H2_4|504-526|1.1e-05^zf-C2H2_6|504-526|1.5e-06^zf-C2H2_jaz|504-514|0.045^Zn-ribbon_8|504-538|0.022^zf_UBZ|504-514|0.023^Zn_ribbon_SprT|504-542|0.036^zf-met|504-514|1.1^zf-C2H2_11|505-523|0.0047^XPA_N|505-514|0.0077^Zap1_zf1|507-522|5.5^zf-H2C2_2|518-541|1.5e-11^DUF3741|519-539|1^zf-C2H2|532-554|8.2e-07^zf-C2H2_4|532-554|0.00051^zf-C2H2_6|532-554|2.7e-05^zf-C2H2_jaz|532-551|0.016^Zn-ribbon_8|532-567|0.089^zf_UBZ|532-541|0.95^zf-met|532-543|0.095^XPA_N|533-542|0.54^Soc|544-570|0.31^zf-H2C2_2|546-570|2.6e-12^DUF3741|554-565|3.9^zf-trcl|558-571|0.017^zf-C2H2|560-582|1.7e-05^zf-C2H2_4|560-582|0.0017^zf-C2H2_6|560-570|0.00027^zf-C2H2_jaz|560-570|0.055^Zn-ribbon_8|560-595|0.00017^zf_UBZ|560-569|0.033^Zn_ribbon_SprT|560-567|1.4^zf-met|560-569|2.3^zf-C2H2_11|561-581|0.056^XPA_N|561-569|0.01^zf-H2C2_2|577-599|4e-09^zf-C2H2_11|586-600|0.035^zf-trcl|586-622|0.16^zf_UBZ|587-600|0.0016^zf-C2H2|588-610|2.8e-07^zf-C2H2_4|588-610|8.2e-06^zf-C2H2_6|588-610|0.00045^zf-C2H2_jaz|588-609|0.0001^Zn-ribbon_8|588-601|0.002^Zn_ribbon_SprT|588-625|1.8e-05^zf-met|588-600|6.6^XPA_N|589-603|0.02^Zap1_zf1|592-606|5.7^zf-C2H2_3rep|597-637|0.093^zf-H2C2_2|603-627|1.4e-11^Soc|607-641|0.23^DUF3741|610-630|1.3^zf_UBZ|615-627|0.013^zf-trcl|615-656|0.34^zf-C2H2|616-638|1.7e-08^zf-C2H2_4|616-638|4.1e-07^zf-C2H2_6|616-641|2.6e-09^zf-C2H2_jaz|616-638|3.9e-05^zf-C2H2_11|616-634|8e-06^Zn-ribbon_8|616-634|0.0006^Zn_ribbon_SprT|616-658|0.00091^zf-met|616-636|0.0088^XPA_N|617-626|0.006^Zap1_zf1|619-634|0.0095^DUF3741|634-663|0.11^zf-H2C2_2|640-660|1.1e-07^zf-C2H2_3rep|641-669|0.02^Soc|644-668|3^zf_UBZ|648-660|0.013^zf-C2H2|649-671|1.7e-08^zf-C2H2_4|649-671|6.6e-07^zf-C2H2_6|649-671|5.6e-08^zf-C2H2_jaz|649-670|3.8e-05^zf-C2H2_11|649-667|8.4e-06^Zn-ribbon_8|649-667|0.00067^Zn_ribbon_SprT|649-668|0.25^zf-met|649-669|0.0095^XPA_N|650-659|0.006^Zap1_zf1|652-667|0.0095 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:0.77Mb] 7 8 7 7.4 INCL_NON_REF_SPLICE YES_LDAS 0.1775 GT 1.8892 AG 1.8256 ENST00000301547.10 1-1272 ENST00000638029.1 3102-7539 chr19|-|[2]12430900-12431980[2]|[1]12432377-12432437[1]|[0]12433071-12433197[0]|[2]12440912-12440914[0]<==>chr19|-|[2]13207313-13208053[0]|[2]13208756-13209009[1]|[0]13209312-13209498[0]|[2]13210617-13210652[0]|[2]13212103-13212216[0]|[2]13212384-13212522[2]|[1]13212631-13212740[0]|[2]13214233-13214333[1]|[0]13214501-13214608[1]|[0]13224667-13224772[0]|[2]13227431-13227527[2]|[1]13230082-13230209[0]|[2]13231710-13231860[2]|[1]13234921-13235036[0]|[2]13235209-13235274[0]|[2]13235614-13235730[0]|[2]13241521-13241526[0]|[2]13245182-13245265[0]|[2]13252991-13253101[0]|[2]13255095-13255259[0]|[2]13257350-13257551[2]|[1]13259564-13259701[2]|[1]13261450-13261610[0]|[2]13262734-13262833[2]|[1]13275850-13275956[0]|[2]13277069-13277128[0]|[2]13283267-13283396[2]|[1]13285068-13285206[1]|[0]13286503-13286966[2] atggcctcagtggctttagaggatgtggctgtgaacttcacccgagaagagtgggctttgctgggtccttgtcagaagaatctctacaaagatgtgatgcaggaaaccatcaggaacctggattgtgtagtaatgaaatggaaagaccagaacattgaagatcaatatagatatcccaggaaaaatctaagatgtcgtatgttagagagatttgttgaaagtaaagatggaactcaatgtggagaaacatctagccagattcaagatagtattgtgaccaagaacactcttcctggagtaggtccttgtgaaagcagtatgagaggagaaaaagtcatgggtcattcatcccttaattgttacatcagagttggtgctgggcacaaaccacatgagtatcatgaatgtggagagaagccagatacgcataaacaacgtgggaaagccttcagttaccacaactcatttcaaacacatgagaggcttcacactggaaagaaaccatatgattgtaaagaatgtgggaagtccttcagttctttgggaaaccttcaaagacacatggcagtgcagcgtggagatggaccttataaatgtaagttgtgtgggaaagcgtttttttggcccagtttattacatatgcatgaaagaacgcacactggagagaaaccatatgaatgtaagcagtgttctaaagccttttctttttacagttcctatctaagacatgaaagaacacatactggggagaaaccgtatgaatgtaaacagtgttctaaagcctttcctttttacagttcctatctaagacatgaaagaacacatactggggagaaaccatataaatgtaagcagtgttctaaagccttccctgattccagttcttgtctaatacatgaaagaactcacactggagagaaaccctatacatgtaaacaatgtgggaaagccttcagtgtttccggttcccttcaaagacatgaaaccactcacagtgcagagaaaccctatgcatgtcagcaatgtgggaaagcgtttcatcatctgggaagctttcaaagacacatgataaggcacactggaaatggacctcataaatgtaagatatgtgggaaaggctttgattgtcctagttcactgcaaagtcatgaaagaactcacactggagagaaaccctatgaatgcaagcagtgtgggaaagcattatctcatcgctcaagctttcgaagtcatatgataatgcacactggagatggacctcataaatgcaagAGAGAACCAGGGCTCCGGGGTCCCTGTGTCGGGCCCCAACCTGTCAACCACCCGGCCAATCCAGCAGGACCTGGGCCGCCAAGACCCACCCCTGGCAGAGGATATTGACAACATGAAGAACAACAAGCTGGCCACCGCGGAGTCGGCCGCTCCCCACGGCAGCCTTGGCCACGCCGGCCTGCCCCAGAGCCCAGCCAAGATGGGAAACAGCACCGACCCCGGCCCCATGCTGGCCATCCCTGCCATGGCCACCAACCCCCAGAACGCCGCCAGCCGCCGGACGCCCAACAACCCGGGGAACCCATCCAATCCCGGCCCCCCCAAGACCCCCGAGAATAGCCTTATCGTCACCAACCCCAGCGGCACCCAGACCAATTCAGCTAAGACTGCCAGGAAACCCGACCACACCACAGTGGACATCCCCCCAGCCTGCCCACCCCCCCTCAACCACACCGTCGTACAAGTGAACAAAAACGCCAACCCAGACCCACTGCCAAAAAAAGAGGAAGAGAAGAAGGAGGAGGAGGAAGACGACCGTGGGGAAGACGGCCCTAAGCCAATGCCTCCCTATAGCTCCATGTTCATCCTGTCCACGACCAACCCCCTTCGCCGCCTGTGCCATTACATCCTGAACCTGCGCTACTTTGAGATGTGCATCCTCATGGTCATTGCCATGAGCAGCATCGCCCTGGCCGCCGAGGACCCTGTGCAGCCCAACGCACCTCGGAACAACGTGCTGCGATACTTTGACTACGTTTTTACAGGCGTCTTTACCTTTGAGATGGTGATCAAGATGATTGACCTGGGGCTCGTCCTGCATCAGGGTGCCTACTTCCGTGACCTCTGGAATATTCTCGACTTCATAGTGGTCAGTGGGGCCCTGGTAGCCTTTGCCTTCACTGGCAATAGCAAAGGAAAAGACATCAACACGATTAAATCCCTCCGAGTCCTCCGGGTGCTACGACCTCTTAAAACCATCAAGCGGCTGCCAAAGCTCAAGGCTGTGTTTGACTGTGTGGTGAACTCACTTAAAAACGTCTTCAACATCCTCATCGTCTACATGCTATTCATGTTCATCTTCGCCGTGGTGGCTGTGCAGCTCTTCAAGGGGAAATTCTTCCACTGCACTGACGAGTCCAAAGAGTTTGAGAAAGATTGTCGAGGCAAATACCTCCTCTACGAGAAGAATGAGGTGAAGGCGCGAGACCGGGAGTGGAAGAAGTATGAATTCCATTACGACAATGTGCTGTGGGCTCTGCTGACCCTCTTCACCGTGTCCACGGGAGAAGGCTGGCCACAGGTCCTCAAGCATTCGGTGGACGCCACCTTTGAGAACCAGGGCCCCAGCCCCGGGTACCGCATGGAGATGTCCATTTTCTACGTCGTCTACTTTGTGGTGTTCCCCTTCTTCTTTGTCAATATCTTTGTGGCCTTGATCATCATCACCTTCCAGGAGCAAGGGGACAAGATGATGGAGGAATACAGCCTGGAGAAAAATGAGAGGGCCTGCATTGATTTCGCCATCAGCGCCAAGCCGCTGACCCGACACATGCCGCAGAACAAGCAGAGCTTCCAGTACCGCATGTGGCAGTTCGTGGTGTCTCCGCCTTTCGAGTACACGATCATGGCCATGATCGCCCTCAACACCATCGTGCTTATGATGAAGTTCTATGGGGCTTCTGTTGCTTATGAAAATGCCCTGCGGGTGTTCAACATCGTCTTCACCTCCCTCTTCTCTCTGGAATGTGTGCTGAAAGTCATGGCTTTTGGGATTCTGAATTATTTCCGCGATGCCTGGAACATCTTCGACTTTGTGACTGTTCTGGGCAGCATCACCGATATCCTCGTGACTGAGTTTGGGAATCCGAATAACTTCATCAACCTGAGCTTTCTCCGCCTCTTCCGAGCTGCCCGGCTCATCAAACTTCTCCGTCAGGGTTACACCATCCGCATTCTTCTCTGGACCTTTGTGCAGTCCTTCAAGGCCCTGCCTTATGTCTGTCTGCTGATCGCCATGCTCTTCTTCATCTATGCCATCATTGGGATGCAGGTGTTTGGTAACATTGGCATCGACGTGGAGGACGAGGACAGTGATGAAGATGAGTTCCAAATCACTGAGCACAATAACTTCCGGACCTTCTTCCAGGCCCTCATGCTTCTCTTCCGGAGTGCCACCGGGGAAGCTTGGCACAACATCATGCTTTCCTGCCTCAGCGGGAAACCGTGTGATAAGAACTCTGGCATCCTGACTCGAGAGTGTGGCAATGAATTTGCTTATTTTTACTTTGTTTCCTTCATCTTCCTCTGCTCGTTTCTGATGCTGAATCTCTTTGTCGCCGTCATCATGGACAACTTTGAGTACCTCACCCGAGACTCCTCCATCCTGGGCCCCCACCACCTGGATGAGTACGTGCGTGTCTGGGCCGAGTATGACCCCGCAGCTTGGGGCCGCATGCCTTACCTGGACATGTATCAGATGCTGAGACACATGTCTCCGCCCCTGGGTCTGGGGAAGAAGTGTCCGGCCAGAGTGGCTTACAAGCGGCTTCTGCGGATGGACCTGCCCGTCGCAGATGACAACACCGTCCACTTCAATTCCACCCTCATGGCTCTGATCCGCACAGCCCTGGACATCAAGATTGCCAAGGGAGGAGCCGACAAACAGCAGATGGACGCTGAGCTGCGGAAGGAGATGATGGCGATTTGGCCCAATCTGTCCCAGAAGACGCTAGACCTGCTGGTCACACCTCACAAGTCCACGGACCTCACCGTGGGGAAGATCTACGCAGCCATGATGATCATGGAGTACTACCGGCAGAGCAAGGCCAAGAAGCTGCAGGCCATGCGCGAGGAGCAGGACCGGACACCCCTCATGTTCCAGCGCATGGAGCCCCCGTCCCCAACGCAGGAAGGGGGACCTGGCCAGAACGCCCTCCCCTCCACCCAGCTGGACCCAGGAGGAGCCCTGATGGCTCACGAAAGCGGCCTCAAGGAGAGCCCGTCCTGGGTGACCCAGCGTGCCCAGGAGATGTTCCAGAAGACGGGCACATGGAGTCCGGAACAAGGCCCCCCTACCGACATGCCCAACAGCCAGCCTAACTCTCAGTCCGTGGAGATGCGAGAGATGGGCAGAGATGGCTACTCCGACAGCGAGCACTACCTCCCCATGGAAGGCCAGGGCCGGGCTGCCTCCATGCCCCGCCTCCCTGCAGAGAACCAGAGGAGAAGGGGCCGGCCACGTGGGAATAACCTCAGTACCATCTCAGACACCAGCCCCATGAAGCGTTCAGCCTCCGTGCTGGGCCCCAAGGCCCGACGCCTGGACGATTACTCGCTGGAGCGGGTCCCGCCCGAGGAGAACCAGCGGCACCACCAGCGGCGCCGCGACCGCAGCCACCGCGCCTCTGAGCGCTCCCTGGGCCGCTACACCGATGTGGACACAGGCTTGGGGACAGACCTGAGCATGACCACCCAATCCGGGGACCTGCCGTCGAAGGAGCGGGACCAGGAGCGGGGCCGGCCCAAGGATCGGAAGCATCGACAGCACCACCACCACCACCACCACCACCACCATCCCCCGCCCCCCGACAAGGACCGCTATGCCCAGGAACGGCCGGACCACGGCCGGGCACGGGCTCGGGACCAGCGCTGGTCCCGCTCGCCCAGCGAGGGCCGAGAGCACATGGCGCACCGGCAGGGCAGTAGTTCCGTAAGTGGAAGCCCAGCCCCCTCAACATCTGGTACCAGCACTCCGCGGCGGGGCCGCCGCCAGCTCCCCCAGACCCCCTCCACCCCCCGGCCACACGTGTCCTATTCCCCTGTGATCCGTAAGGCCGGCGGCTCGGGGCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGTGGCCAGGCCGGGCCGGGCGGCCACCAGCGGCCCTCGGAGGTACCCAGGCCCCACGGCCGAGCCTCTGGCCGGAGATCGGCCGCCCACGGGGGGCCACAGCAGCGGCCGCTCGCCCAGGATGGAGAGGCGGGTCCCAGGCCCGGCCCGGAGCGAGTCCCCCAGGGCCTGTCGACACGGCGGGGCCCGGTGGCCGGCATCTGGCCCGCACGTGTCCGAGGGGCCCCCGGGTCCCCGGCACCATGGCTACTACCGGGGCTCCGACTACGACGAGGCCGATGGCCCGGGCAGCGGGGGCGGCGAGGAGGCCATGGCCGGGGCCTACGACGCGCCACCCCCCGTACGACACGCGTCCTCGGGCGCCACCGGGCGCTCGCCCAGGACTCCCCGGGCCTCGGGCCCGGCCTGCGCCTCGCCTTCTCGGCACGGCCGGCGACTCCCCAACGGCTACTACCCGGCGCACGGACTGGCCAGGCCCCGCGGGCCGGGCTCCAGGAAGGGCCTGCACGAACCCTACAGCGAGAGTGACGATGATTGGTGCTAA MASVALEDVAVNFTREEWALLGPCQKNLYKDVMQETIRNLDCVVMKWKDQNIEDQYRYPRKNLRCRMLERFVESKDGTQCGETSSQIQDSIVTKNTLPGVGPCESSMRGEKVMGHSSLNCYIRVGAGHKPHEYHECGEKPDTHKQRGKAFSYHNSFQTHERLHTGKKPYDCKECGKSFSSLGNLQRHMAVQRGDGPYKCKLCGKAFFWPSLLHMHERTHTGEKPYECKQCSKAFSFYSSYLRHERTHTGEKPYECKQCSKAFPFYSSYLRHERTHTGEKPYKCKQCSKAFPDSSSCLIHERTHTGEKPYTCKQCGKAFSVSGSLQRHETTHSAEKPYACQQCGKAFHHLGSFQRHMIRHTGNGPHKCKICGKGFDCPSSLQSHERTHTGEKPYECKQCGKALSHRSSFRSHMIMHTGDGPHKCKREPGLRGPCVGPQPVNHPANPAGPGPPRPTPGRGY*QHEEQQAGHRGVGRSPRQPWPRRPAPEPSQDGKQHRPRPHAGHPCHGHQPPERRQPPDAQQPGEPIQSRPPQDPRE*PYRHQPQRHPDQFS*DCQETRPHHSGHPPSLPTPPQPHRRTSEQKRQPRPTAKKRGREEGGGGRRPWGRRP*ANASL*LHVHPVHDQPPSPPVPLHPEPALL*DVHPHGHCHEQHRPGRRGPCAAQRTSEQRAAIL*LRFYRRLYL*DGDQDD*PGARPASGCLLP*PLEYSRLHSGQWGPGSLCLHWQ*QRKRHQHD*IPPSPPGATTS*NHQAAAKAQGCV*LCGELT*KRLQHPHRLHAIHVHLRRGGCAALQGEILPLH*RVQRV*ERLSRQIPPLREE*GEGARPGVEEV*IPLRQCAVGSADPLHRVHGRRLATGPQAFGGRHL*EPGPQPRVPHGDVHFLRRLLCGVPLLLCQYLCGLDHHHLPGARGQDDGGIQPGEK*EGLH*FRHQRQAADPTHAAEQAELPVPHVAVRGVSAFRVHDHGHDRPQHHRAYDEVLWGFCCL*KCPAGVQHRLHLPLLSGMCAESHGFWDSELFPRCLEHLRLCDCSGQHHRYPRD*VWESE*LHQPELSPPLPSCPAHQTSPSGLHHPHSSLDLCAVLQGPALCLSADRHALLHLCHHWDAGVW*HWHRRGGRGQ**R*VPNH*AQ*LPDLLPGPHASLPECHRGSLAQHHAFLPQRETV**ELWHPDSRVWQ*ICLFLLCFLHLPLLVSDAESLCRRHHGQL*VPHPRLLHPGPPPPG*VRACLGRV*PRSLGPHALPGHVSDAETHVSAPGSGEEVSGQSGLQAASADGPARRR*QHRPLQFHPHGSDPHSPGHQDCQGRSRQTADGR*AAEGDDGDLAQSVPEDARPAGHTSQVHGPHRGEDLRSHDDHGVLPAEQGQEAAGHARGAGPDTPHVPAHGAPVPNAGRGTWPERPPLHPAGPRRSPDGSRKRPQGEPVLGDPACPGDVPEDGHMESGTRPPYRHAQQPA*LSVRGDARDGQRWLLRQRALPPHGRPGPGCLHAPPPCREPEEKGPATWE*PQYHLRHQPHEAFSLRAGPQGPTPGRLLAGAGPARGEPAAPPAAPRPQPPRL*ALPGPLHRCGHRLGDRPEHDHPIRGPAVEGAGPGAGPAQGSEASTAPPPPPPPPPSPAPRQGPLCPGTAGPRPGTGSGPALVPLAQRGPRAHGAPAGQ*FRKWKPSPLNIWYQHSAAGPPPAPPDPLHPPATRVLFPCDP*GRRLGAPAAAAAAAAAAAAAGGGQAGPGGHQRPSEVPRPHGRASGRRSAAHGGPQQRPLAQDGEAGPRPGPERVPQGLSTRRGPVAGIWPARVRGAPGSPAPWLLPGLRLRRGRWPGQRGRRGGHGRGLRRATPRTTRVLGRHRALAQDSPGLGPGLRLAFSARPATPQRLLPGARTGQAPRAGLQEGPARTLQRE*R*LVL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33670 POLDIP3::CYB5R3 ENSG00000100227.19::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2502 TRUE 4579 TRUE 1734 POLDIP3 ENSG00000100227.19 protein_coding - - chr22:42583721-42614962:- chr22:42591955:- chr22:42979727-43010968:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42627688:- chr22:43011736-43116876:- chr22:43023694:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RRM_1|301-361|2.1e-14 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[2878] 6 8 6 4.3 ONLY_REF_SPLICE YES_LDAS 0.127 GT 1.8892 AG 1.9656 ENST00000451060.6 1-1072 ENST00000693363.1 464-948 chr22|-|[0]42591955-42592084[0]|[2]42595537-42595614[0]|[2]42596186-42596365[0]|[2]42599698-42599793[0]|[2]42601970-42602107[0]|[2]42602770-42603160[2]|[1]42614799-42614857[0]<==>chr22|-|[2]42619773-42619945[1]|[0]42623789-42623888[0]|[2]42627304-42627431[1]|[0]42627605-42627688[1] atggcggacatctccctggacgaactcatcaggaagcgcggggcggcggcgaaaggacggcttaatgccagaccgggagttggaggtgtccgatctcgagttgggatccagcaaggccttctcagccagtcaacacgcacagccaccttccagcagagatttgatgcccggcagaagattggcctctcagatgcccggctcaaactgggagtcaaggatgcccgggagaagcttttgcagaaagatgcccgatttcgaatcaaagggaaagtgcaggatgccagagagatgttgaactctcgcaagcagcagaccacggtgccccagaagccccgccaggttgctgatgcccgggagaagatcagcttgaagaggagttcccctgctgccttcataaacccacccattgggacagtgacccctgctctgaagctcaccaaaaccatccagagaatgcatgtggaccctgtggggtggattctgaccactgagtgtttccaggttccacagcagaaagccatggcaccacttcatccccatcctgccggaatgagaatcaatgttgtcaataaccaccaggccaaacagaatttatatgacctggatgaagatgatgatggtatagcttccgttcctactaaacagatgaagtttgcagcctcaggcggctttctccaccacatggctgggctaagcagttccaagctttccatgtccaaggccctccctctcaccaaagtggttcagaatgatgcatacacagctcctgctctcccttcctctattcgaacaaaagccttgaccaacatgtcccggacactggtgaacaaggaagaaccccccaaagagctgccagctgctgagcctgttctcagcccattggaaggcaccaagatgactgtgaataatctgcaccctcgagtcactgaggaggacattgttgagcttttctgtgtgtgtggggccctcaagcgagctcgactggtccatcctggggtagcggaggtggtgtttgtgaaaaaggacgatgccatcaccgcatataagaagtacaacaaccggtgtctggacgGGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCATCAGGACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAGGCCTCGCTCAGCACGTGCGAGGCCCGGCCGGCTATTTTGCAGGCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATGAAGGACCCTGATGACCACACTGTGTGCCACCTGCTCTTTGCCAACCAGACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAGCCTGGGACTACGGCCAGGGCTTCGTGAATGAGGAGATGATCCGGGACCACCTTCCACCCCCAGAGGAGGAGCCGCTGGTGCTGATGTGTGGCCCCCCACCCATGATCCAGTACGCCTGCCTTCCCAACCTGGACCACGTGGGCCACCCCACGGAGCGCTGCTTCGTCTTCTGA MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQRMHVDPVGWILTTECFQVPQQKAMAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGKFAIRPDKKSNPIIRTVKSVGMIAGGTGLAQHVRGPAGYFAGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCFVF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33673 POLDIP3::CYB5R3 ENSG00000100227.19::ENSG00000100243.22 NCIH146 SRR8616188 SRR8652148 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2503 TRUE 4579 TRUE 1734 POLDIP3 ENSG00000100227.19 protein_coding - - chr22:42583721-42614962:- chr22:42591955:- chr22:42979727-43010968:- chr22:42987961:- CYB5R3 ENSG00000100243.22 protein_coding - - chr22:42615730-42720870:- chr22:42628281:- chr22:43011736-43116876:- chr22:43024287:- chr22:42589003,chr22:42589012,chr22:42589014 chr22:42630968,chr22:42630981,chr22:42630981 NA NA chr22:42985009,chr22:42985018,chr22:42985020 chr22:43026974,chr22:43026987,chr22:43026987 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RRM_1|301-361|2.1e-14 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.00Mb];LOCAL_REARRANGEMENT:-:[2878] 3 10 3 5.59 ONLY_REF_SPLICE YES_LDAS 0.1059 GT 1.8892 AG 1.9656 ENST00000451060.6 1-1072 ENST00000361740.9 334-1038 chr22|-|[0]42591955-42592084[0]|[2]42595537-42595614[0]|[2]42596186-42596365[0]|[2]42599698-42599793[0]|[2]42601970-42602107[0]|[2]42602770-42603160[2]|[1]42614799-42614857[0]<==>chr22|-|[2]42619773-42619945[1]|[0]42623789-42623888[0]|[2]42627304-42627389[1]|[0]42627605-42627688[1]|[0]42627772-42627903[1]|[0]42628152-42628281[0] atggcggacatctccctggacgaactcatcaggaagcgcggggcggcggcgaaaggacggcttaatgccagaccgggagttggaggtgtccgatctcgagttgggatccagcaaggccttctcagccagtcaacacgcacagccaccttccagcagagatttgatgcccggcagaagattggcctctcagatgcccggctcaaactgggagtcaaggatgcccgggagaagcttttgcagaaagatgcccgatttcgaatcaaagggaaagtgcaggatgccagagagatgttgaactctcgcaagcagcagaccacggtgccccagaagccccgccaggttgctgatgcccgggagaagatcagcttgaagaggagttcccctgctgccttcataaacccacccattgggacagtgacccctgctctgaagctcaccaaaaccatccagagaatgcatgtggaccctgtggggtggattctgaccactgagtgtttccaggttccacagcagaaagccatggcaccacttcatccccatcctgccggaatgagaatcaatgttgtcaataaccaccaggccaaacagaatttatatgacctggatgaagatgatgatggtatagcttccgttcctactaaacagatgaagtttgcagcctcaggcggctttctccaccacatggctgggctaagcagttccaagctttccatgtccaaggccctccctctcaccaaagtggttcagaatgatgcatacacagctcctgctctcccttcctctattcgaacaaaagccttgaccaacatgtcccggacactggtgaacaaggaagaaccccccaaagagctgccagctgctgagcctgttctcagcccattggaaggcaccaagatgactgtgaataatctgcaccctcgagtcactgaggaggacattgttgagcttttctgtgtgtgtggggccctcaagcgagctcgactggtccatcctggggtagcggaggtggtgtttgtgaaaaaggacgatgccatcaccgcatataagaagtacaacaaccggtgtctggacgGTTTACTTCAAGGACACCCATCCCAAGTTTCCCGCTGGAGGGAAGATGTCTCAGTACCTGGAGAGCATGCAGATTGGAGACACCATTGAGTTCCGGGGCCCCAGTGGGCTGCTGGTCTACCAGGGCAAAGCATCTGAAACAAGCAAGCAAGAGGACAGAGCTGAGCCTCCGGGTTCCCAGCCTCTCCACTGCTCCTGCACCTTCCTCATGGCTCGCGTTAGAATGGCAGCTGCCTCTACCTCGGACCTCACAGTGGGGGCAGGGAAGTTCGCCATCCGACCTGACAAAAAGTCCAACCCTATCATCAGGACAGTGAAGTCTGTGGGCATGATCGCGGGAGGGACAGGCATCACCCCGATGCTGCAGGTGATCCGCGCCATCATGAAGGACCCTGATGACCACACTGTGTGCCACCTGCTCTTTGCCAACCAGACCGAGAAGGACATCCTGCTGCGACCTGAGCTGGAGGAACTCAGGAACAAACATTCTGCACGCTTCAAGCTCTGGTACACGCTGGACAGAGCCCCTGAAGCCTGGGACTACGGCCAGGGCTTCGTGAATGAGGAGATGATCCGGGACCACCTTCCACCCCCAGAGGAGGAGCCGCTGGTGCTGATGTGTGGCCCCCCACCCATGATCCAGTACGCCTGCCTTCCCAACCTGGACCACGTGGGCCACCCCACGGAGCGCTGCTTCGTCTTCTGA MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQRMHVDPVGWILTTECFQVPQQKAMAPLHPHPAGMRINVVNNHQAKQNLYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGLLQGHPSQVSRWREDVSVPGEHADWRHH*VPGPQWAAGLPGQSI*NKQARGQS*ASGFPASPLLLHLPHGSR*NGSCLYLGPHSGGREVRHPT*QKVQPYHQDSEVCGHDRGRDRHHPDAAGDPRHHEGP**PHCVPPALCQPDREGHPAAT*AGGTQEQTFCTLQALVHAGQSP*SLGLRPGLRE*GDDPGPPSTPRGGAAGADVWPPTHDPVRLPSQPGPRGPPHGALLRLL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33677 TET3::DGUOK ENSG00000187605.16::ENSG00000114956.20 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2505 FALSE NA FALSE NA TET3 ENSG00000187605.16 protein_coding + + chr2:73984910-74108176:+ chr2:74003166:+ chr2:74212037-74335303:+ chr2:74230293:+ DGUOK ENSG00000114956.20 protein_coding + + chr2:73926826-73958961:+ chr2:73946719:+ chr2:74153953-74186088:+ chr2:74173846:+ chr2:74041630,chr2:74041628 chr2:73946591,chr2:73946586 NA NA chr2:74268757,chr2:74268755 chr2:74173718,chr2:74173713 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-CXXC|51-89|4.5e-10 dNK-PARTIAL|~256-275|2e-74^MMR_HSR1-PARTIAL|~256-268|0.23 ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr2:0.03Mb];LOCAL_REARRANGEMENT:+:[27443] 19 18 19 17.8 ONLY_REF_SPLICE YES_LDAS 0.498 GT 1.8295 AG 1.8295 ENST00000409262.8 1-360 ENST00000264093.9 256-834 chr2|+|[0]73986404-73986706[2]|[0]74003110-74003166[2]<==>chr2|+|[0]73946719-73946906[1]|[2]73950585-73950732[2]|[0]73957125-73957240[1]|[2]73958146-73958245[2]|[0]73958710-73958736[2] atgagccagtttcaggtgcccctggccgtccagccggacctgccaggcctttatgacttccctcagcgccaggtgatggtagggagcttcccggggtctgggctctccatggctgggagtgagtcccaactccgagggggtggagatggtcgaaagaaacggaaacggtgtggtacttgtgagccctgccggcggctggaaaactgtggcgcttgcactagctgtaccaaccgccgcacgcaccagatctgcaaactgcgaaaatgtgaggtgctgaagaaaaaagtagggcttctcaaggaggtggaaataaaggctggtgaaggagccgggccgtggggacaaggagcggctgtcaagGCCTGCACTGCCCAAAGTCTTGGAAACTTGCTGGATATGATGTACCGGGAGCCAGCACGATGGTCCTACACATTCCAGACATTTTCCTTTTTGAGCCGCCTGAAAGTACAGCTGGAGCCCTTCCCTGAGAAACTCTTACAGGCCAGGAAGCCAGTACAGATCTTTGAGAGGTCTGTGTACAGTGACAGGTATATCTTTGCAAAGAATCTTTTTGAAAATGGTTCCCTCAGTGACATCGAGTGGCATATCTATCAGGACTGGCATTCTTTTCTCCTGTGGGAGTTTGCCAGCCGGATCACATTACATGGCTTCATCTACCTCCAGGCTTCTCCCCAGGTTTGTTTGAAGAGACTGTACCAGAGGGCCAGGGAGGAGGAGAAAGGAATTGAGCTGGCCTATCTAGAGCAGCTGCATGGCCAACACGAAGCCTGGCTTATTCACAAGACAACGAAGCTCCACTTTGAGGCTCTGATGAACATTCCAGTGCTGGTGTTGGATGTCAATGATGATTTTTCTGAGGAAGTAACCAAACAAGAAGACCTCATGAGAGAGGTAAACACCTTTGTAAAGAATCTGTAA MSQFQVPLAVQPDLPGLYDFPQRQVMVGSFPGSGLSMAGSESQLRGGGDGRKKRKRCGTCEPCRRLENCGACTSCTNRRTHQICKLRKCEVLKKKVGLLKEVEIKAGEGAGPWGQGAAVKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match TRUE Breast invasive carcinoma,Brain Lower Grade Glioma BREAST,CENTRAL_NERVOUS_SYSTEM no_match 74317174|74317174,74230293|74230293|74230293 FALSE|FALSE,TRUE|TRUE|TRUE 74184252|74185273,74173846|74185273|74184252 FALSE|FALSE,TRUE|FALSE|FALSE PARTIALLY,PARTIALLY In-frame,NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33682 LRRC75A::ENSG00000269289 ENSG00000181350.12::ENSG00000269289.6 NCIH1618 SRR8616191 SRR8652145 LUNG carcinoma (small_cell_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA LRRC75A ENSG00000181350.12 protein_coding - - chr17:16441577-16492193:- chr17:16462258:- chr17:16344891-16395507:- chr17:16365572:- ENSG00000269289 ENSG00000269289.6 lncRNA - - chr19:23919081-23958035:- chr19:23920198:- chr19:24101883-24140837:- chr19:24103000:- chr17:16455874,chr17:16455879 chr19:23928524,chr19:23928526 NA NA chr17:16359188,chr17:16359193 chr19:24111326,chr19:24111328 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 6 5 6 5 ONLY_REF_SPLICE YES_LDAS 0.1489 GT 1.8295 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33686 ACACA::STAC2 ENSG00000278540.5::ENSG00000141750.7 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2510 FALSE NA FALSE NA ACACA ENSG00000278540.5 protein_coding - - chr17:37084992-37406836:- chr17:37122531:- chr17:35441927-35766927:- chr17:35479453:- STAC2 ENSG00000141750.7 protein_coding - - chr17:39210541-39225945:- chr17:39218173:- chr17:37366794-37382198:- chr17:37374426:- chr17:37122070,chr17:37122073 chr17:39220270,chr17:39220270 NA NA chr17:35478992,chr17:35478995 chr17:37376523,chr17:37376523 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Biotin_carb_N|155-274|1.8e-32^MetallophosN|169-218|0.00032^CPSase_L_D2|325-508|6.4e-57^ATP-grasp|328-478|5.4e-09^Dala_Dala_lig_C|336-477|8.1e-09^ATP-grasp_3|338-480|1.4e-07^Biotin_carb_C|545-651|1.1e-26^ACCA_BT|664-783|1.2e-49^Biotin_lipoyl|790-855|1.6e-20^ACC_central|856-1606|1.1e-256^DUF445|910-986|0.64^DUF445|1348-1550|0.018^Biotin_carb_C|1453-1480|2.3^Biotin_carb_C|1616-1635|7.5^Carboxyl_trans|1706-2259|4.8e-174^DUF445|2263-2345|0.0049 C1_1|111-157|1.9e-11^C1_2|116-152|4.1e-06^zf-RING-like|124-162|0.00023^PHD|124-155|0.00064^SH3_2|128-142|1.7^STAC2_u1|167-295|1.3e-46^SH3_2|297-347|4.7e-10^SH3_1|298-343|9.2e-16^SH3_9|299-347|8.1e-16^SH3_2|357-410|9e-09^SH3_9|366-405|0.00049^SH3_1|371-404|0.081 ["Klijn_CellLines","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:1.80Mb] 374 143 374 143 ONLY_REF_SPLICE YES_LDAS 6.4583 GT 1.9656 AG 1.9656 ENST00000616317.5 1-6138 ENST00000333461.6 91-1236 chr17|-|[2]37122531-37122627[2]|[1]37125698-37125794[1]|[0]37129365-37129485[0]|[2]37130075-37130218[0]|[2]37149864-37149974[0]|[2]37151301-37151421[2]|[1]37155683-37155780[0]|[2]37161781-37162050[0]|[2]37179260-37179406[0]|[2]37181201-37181356[0]|[2]37188277-37188480[0]|[2]37191120-37191275[0]|[2]37192090-37192305[0]|[2]37193374-37193415[0]|[2]37200139-37200183[0]|[2]37200427-37200483[0]|[2]37205765-37205872[0]|[2]37206783-37206879[2]|[1]37207657-37207800[2]|[1]37210467-37210490[2]|[1]37221724-37221842[0]|[2]37223512-37223601[0]|[2]37224992-37225105[0]|[2]37226339-37226452[0]|[2]37234975-37235099[1]|[0]37240476-37240564[2]|[1]37241953-37242053[0]|[2]37243371-37243559[0]|[2]37244588-37244734[0]|[2]37245080-37245214[0]|[2]37246826-37246976[2]|[1]37248011-37248156[0]|[2]37248593-37248674[2]|[1]37252005-37252108[0]|[2]37252886-37253036[2]|[1]37257703-37257866[0]|[2]37258212-37258373[0]|[2]37259360-37259530[0]|[2]37263685-37263894[0]|[2]37270751-37270861[0]|[2]37274193-37274299[1]|[0]37275951-37276049[1]|[0]37277033-37277114[0]|[2]37277896-37278005[1]|[0]37283267-37283405[0]|[2]37284838-37284970[2]|[1]37330173-37330425[1]|[0]37339804-37339850[2]|[1]37406262-37406299[0]<==>chr17|-|[2]39212292-39212396[0]|[2]39212995-39213132[0]|[2]39213507-39213558[2]|[1]39214233-39214330[0]|[2]39214791-39214861[1]|[0]39214951-39215023[0]|[2]39215118-39215230[1]|[0]39216810-39216900[0]|[2]39217076-39217173[1]|[0]39217867-39218173[0] atgtggtggtctactctgatgtcaatcttgagggctaggtctttttggaagtggatatctactcagacagtaagaattataagagctgtaagagctcattttggaggaataatggatgaaccatctcccttggcccaacctctggagctgaaccagcactctcgattcataataggttctgtgtctgaagataactcagaggatgagatcagcaacctggtgaagttggacctactggaggagaaggagggctccttgtcacctgcttctgttggctcagatacactctctgatttggggatctctagcctacaggatggcttggccttgcacataaggtccagcatgtctggcttgcacctagtaaagcagggccgagacagaaagaaaatagattctcaacgagatttcactgtggcttctccagcagaatttgttactcgctttgggggaaataaagtgattgagaaggttcttattgctaacaatggcattgcagcagtgaaatgcatgcggtctatccgtaggtggtcttatgaaatgtttcgaaatgaacgtgcaattagattcgttgtcatggtcacacctgaagaccttaaagccaatgcagaatacattaagatggcagatcactatgtgccagtgcctggaggaccaaacaacaacaactatgcaaatgtggaattaattcttgatattgctaaaaggatcccagtacaagcagtgtgggctggctggggtcatgcttctgagaatcccaaactaccggaacttctcttgaaaaatggcattgccttcatgggtcctccaagccaggccatgtgggctttaggggataagattgcatcttccatagtggctcaaactgcaggtatcccaactcttccctggagcggcagtggtcttcgtgtggactggcaggaaaatgatttttcaaaacgtatcttaaatgttccccaggagctatatgaaaaaggttatgtgaaagatgtggatgatgggctacaggcagctgaggaagttggatatccagtaatgatcaaggcctcagagggaggaggagggaagggaattagaaaagtcaacaatgcagatgacttccctaatctcttcagacaggttcaagctgaagttcctggatctcccatatttgtgatgagactagccaaacaatctcgtcatctggaggtgcagatcttagcggaccaatatggcaatgctatctctttgtttggtcgtgattgctctgtacaacgcaggcatcagaagattattgaagaagcacctgctactattgctactccagcagtatttgaacacatggaacagtgtgcggtgaaacttgccaaaatggtgggttatgtgagtgctgggactgtggaatacctgtacagccaggatggcagcttctactttctggaattgaatcctcggctgcaggtagagcacccttgtacagagatggtggctgatgtcaatctccctgcagcacagctccagattgccatggggattcctctatatagaatcaaggatatccgtatgatgtatggggtatctccctggggtgattctcccattgattttgaagattctgcacacgttccttgtccaaggggccatgttattgctgctcggatcactagtgaaaatccagatgagggttttaagcccagctcaggaacagttcaggagctaaatttccgcagcaataagaatgtttggggatatttcagtgttgctgctgcagggggacttcatgaatttgctgattctcagtttggtcactgcttttcttggggagaaaacagagaagaggcaatttcaaacatggtggtggctttgaaggagctgtctattcggggtgactttcgaactacagttgaatacctgatcaaattgttagagactgaaagctttcagatgaacagaattgatactggctggctggacagactgatagcagaaaaagtacaggctgagcgacctgacaccatgttgggggttgtgtgtggtgccctccacgtggcagatgtgagcctgcggaatagcgtctctaacttccttcactccttagaaaggggtcaagtccttcctgctcatacacttctgaatacagtagatgttgaacttatctatgagggagtcaagtatgtacttaaggtgactcgacagtcccccaactcctatgtggtgatcatgaatggctcatgtgtagaagtagatgtacatcggctgagtgacggtggactgctcttgtcctatgatggcagcagttatactacgtatatgaaagaggaagtggatagatatcgcatcacaattggcaataaaacctgtgtgtttgagaaggaaaatgacccatcggtgatgcgctcaccttctgctgggaagttaatccagtacattgtagaagatggaggtcatgtgtttgccggccagtgctatgctgagattgaggtaatgaagatggtaatgaccttaacagctgtggagtctggctgtatccattacgtcaagcgacctggagcagctcttgaccctggctgtgtactagccaaaatgcaactggacaaccccagcaaggttcagcaggctgaacttcacacaggtagtctgccacggatccagagcacggcactcagaggcgagaaactccatcgagtgttccattatgtcctggataatctggtcaatgtaatgaatggatactgccttccagatcctttctttagcagcaaggtaaaagactgggtagagcgattgatgaaaaccctcagagatccctccctgcctctcctagaattgcaagatattatgaccagtgtgtctggccgcattccccccaatgtggagaagtctatcaagaaggaaatggctcagtatgctagcaacatcacatcagtcctctgtcagtttcccagccagcagattgcaaacatcctagatagccatgcagctacattgaaccggaaatctgaacgggaagtcttctttatgaatactcagagcattgttcagctggtacagaggtaccgaagtggcatccgaggccacatgaaggctgtggtgatggatctgctccggcagtacctgcgagtagagacacaattccagaatggtcactatgacaaatgtgtattcgccctccgagaagagaataaaagtgacatgaacactgtactgaactacatcttctctcacgctcaagtcaccaagaagaatcttctggtcacaatgcttattgatcagttgtgtggccgggaccctactctcactgatgagctgctgaatattctcacagagctaactcaactcagtaagaccaccaatgccaaagtagcacttcgagcacgccaggttcttattgcctcccatttgccatcatatgagcttcgccataaccaagtagagtctatcttcctatcagctattgacatgtatggacatcaattttgcattgagaacctgcagaaactcatcctatcagaaacatctatttttgatgtcctaccaaacttcttctatcacagcaaccaagtagtgaggatggcagctctggaggtgtatgttcgaagggcttatattgcctatgaacttaacagcgtacaacaccgccagcttaaggacaacacctgtgtggtggaattccagttcatgctgcccacatctcatccaaacagagggaacatccctacgctaaacagaatgtccttctcctccaacctcaaccactatggcatgacccatgtagctagtgtcagcgatgtactgttggacaactcattcactccaccttgtcagcggatgggcggaatggtctcttttcggacttttgaagattttgtcaggatctttgatgaagtgatgggctgcttctctgactccccaccccagagtcccacattccctgaggcaggtcacacgtctctttatgatgaggataaggttcccagggatgaaccaattcacattctcaatgtggctatcaagactgactgtgatattgaggatgacaggctggcagctatgttcagagaatttacccagcaaaataaagctaccctggttgaccatgggatccggcgccttactttcctggttgcacaaaaggatttcagaaagcaggtcaactatgaggtggatcggagatttcatagagaattccctaaattttttacattccgagcaagggataagtttgaggaggatcgtatctatcgtcatctggagcctgctctggctttccagttagagctgaaccggatgagaaattttgacctcactgccattccatgtgctaatcacaagatgcacctgtatctcggggcagccaaggtggaagtgggcacagaagtgacagactacaggttctttgttcgtgcaatcatcaggcattctgatctggtcaccaaggaagcttcttttgaatatctgcaaaatgaaggggagcggctactcctggaagccatggatgagttggaagttgcttttaacaatacaaatgtccgcactgactgtaaccacatcttcctcaactttgtgcccacggttatcatggacccatcaaagattgaggaatccgtgcggagcatggtaatgcggtatggaagtcgcctgtggaaattgcgcgtcctccaggcagaactgaaaatcaacattcgcctgacgccaactggaaaagcaattcccatccgcctcttcctgacaaacgagtctggctattacttggatatcagcctatacaaggaagtgactgactccaggacagcacagatcatgtttcaggcatatggagacaaacagggaccactgcatggaatgttaatcaatactccatatgtgaccaaagacctgctgcaatcaaagaggttccaggcacaatccttagggacaacatacatatatgatatcccagagatgtttcggcagtccctgatcaaactctgggagtctatgtccactcaagcatttcttccatctccccctctgccttctgacatgctgacttacactgaactggtactggatgatcaaggtcagctggtccacatgaacaggcttccaggaggaaatgagattggcatggtagcttggaaaatgacctttaaaagtcctgaatatccagaaggccgagatatcattgttattggcaatgacatcacataccgaattgggtcctttgggcctcaagaggatttgttatttctcagagcttccgaacttgctagggcagaaggtattccacgcatctatgtatcagccaacagtggagcaagaatcggactggcagaagaaattcgccatatgtttcatgtggcctgggtagatcctgaggatccttacaagggatacaggtatttatatctgactcctcaagattataagagagtcagtgctctcaactctgtccattgtgaacacgtggaagatgaaggagaatccaggtacaagataacagatattattgggaaagaagagggaattggacccgagaaccttcgaggttctggaatgattgctggagaatcctcattggcctataatgagatcattaccatcagcctggtgacgtgccgggccattgggattggggcttaccttgtccggctgggacagagaaccatccaggttgagaattctcacttaattctaacaggagctggagccctcaacaaagtcctcgggcgggaagtgtacacctccaataaccagctggggggcatccagattatgcacaacaatggggtgacccactgcactgtgtgtgatgactttgaaggggttttcactgtcctgcactggctgtcttacatgcccaagagcgtgcacagttcagttcctcttctgaactcaaaggatcctatagacagaatcatcgagtttgttcccacaaagaccccatacgatcctcgatggatgctagcaggccgtcctcacccaacccaaaaaggtcagtggttgagtggcttttttgactatggatctttctcagagattatgcagccctgggcacagactgtggtggttggtagagccaggctaggaggaatacctgtgggagttgttgctgtagaaacccgaacagtagaactaagtatcccagctgatccagcaaacctggattctgaagccaagCTCCAGCGATTCAAGCGCTCCCTCTCCCTCAAGACCATCCTCCGAAGTAAGAGCTTGGAGAACTTCTTCCTTCGCTCGGGCTCTGAGCTCAAGTGCCCCACCGAGGTGCTGCTGACGCCCCCAACCCCACTGCCCCCTCCCTCCCCACCACCCACAGCCTCGGACAGGGGCCTGGCTACCCCATCCCCCTCCCCATGCCCAGTCCCACGCCCCCTGGCAGCGCTCAAACCAGTGAGGCTGCACAGCTTCCAGGAACATGTCTTCAAGCGAGCTAGCCCTTGTGAGCTGTGCCACCAGCTCATCGTAGGAAACTCCAAACAGGGCTTGCGATGTAAGATGTGCAAAGTCAGCGTCCACCTCTGGTGCTCTGAGGAGATCTCCCACCAGCAATGCCCAGGCAAGACGTCCACCTCCTTCCGCCGCAACTTCAGTTCCCCTCTCCTGGTGCATGAGCCGCCACCAGTCTGTGCCACAAGCAAAGAGTCCCCACCCACTGGGGACAGTGGGAAGGTGGACCCTGTCTACGAGACCCTGCGCTATGGCACCTCCCTGGCACTGATGAACCGCTCCAGTTTCAGCAGCACCTCTGAGTCCCCGACAAGGAGCCTGAGTGAGCGGGATGAGCTGACCGAGGATGGGGAAGGCAGCATCCGCAGCTCTGAGGAGGGGCCTGGTGACAGTGCATCTCCAGTATTCACAGCCCCAGCAGAGAGTGAAGGGCCAGGACCAGAGGAGAAGAGTCCTGGACAGCAGCTCCCCAAAGCCACCCTGCGGAAGGATGTGGGGCCCATGTACTCCTACGTTGCACTCTACAAGTTTCTGCCCCAGGAGAACAATGATCTGGCTCTGCAGCCTGGAGATCGGATCATGCTGGTGGATGACTCTAACGAGGACTGGTGGAAGGGCAAGATCGGCGACCGGGTTGGCTTCTTCCCAGCTAATTTTGTGCAACGGGTGAGGCCAGGCGAGAATGTTTGGCGCTGCTGCCAACCCTTCTCCGGGAACAAGGAACAGGGTTACATGAGCCTCAAGGAGAACCAGATCTGCGTGGGCGTGGGCAGAAGCAAGGATGCTGACGGCTTCATCCGCGTCAGCAGTGGCAAGAAGCGGGGCCTGGTGCCAGTCGACGCCCTGACTGAGATCTGA MWWSTLMSILRARSFWKWISTQTVRIIRAVRAHFGGIMDEPSPLAQPLELNQHSRFIIGSVSEDNSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISSLQDGLALHIRSSMSGLHLVKQGRDRKKIDSQRDFTVASPAEFVTRFGGNKVIEKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLYRIKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQMNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSVSNFLHSLERGQVLPAHTLLNTVDVELIYEGVKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVLAKMQLDNPSKVQQAELHTGSLPRIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSKVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPPNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAKVALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGHQFCIENLQKLILSETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPNRGNIPTLNRMSFSSNLNHYGMTHVASVSDVLLDNSFTPPCQRMGGMVSFRTFEDFVRIFDEVMGCFSDSPPQSPTFPEAGHTSLYDEDKVPRDEPIHILNVAIKTDCDIEDDRLAAMFREFTQQNKATLVDHGIRRLTFLVAQKDFRKQVNYEVDRRFHREFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFDLTAIPCANHKMHLYLGAAKVEVGTEVTDYRFFVRAIIRHSDLVTKEASFEYLQNEGERLLLEAMDELEVAFNNTNVRTDCNHIFLNFVPTVIMDPSKIEESVRSMVMRYGSRLWKLRVLQAELKINIRLTPTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQIMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDMLTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMTFKSPEYPEGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVSANSGARIGLAEEIRHMFHVAWVDPEDPYKGYRYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGIGPENLRGSGMIAGESSLAYNEIITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKVLGREVYTSNNQLGGIQIMHNNGVTHCTVCDDFEGVFTVLHWLSYMPKSVHSSVPLLNSKDPIDRIIEFVPTKTPYDPRWMLAGRPHPTQKGQWLSGFFDYGSFSEIMQPWAQTVVVGRARLGGIPVGVVAVETRTVELSIPADPANLDSEAKLQRFKRSLSLKTILRSKSLENFFLRSGSELKCPTEVLLTPPTPLPPPSPPPTASDRGLATPSPSPCPVPRPLAALKPVRLHSFQEHVFKRASPCELCHQLIVGNSKQGLRCKMCKVSVHLWCSEEISHQQCPGKTSTSFRRNFSSPLLVHEPPPVCATSKESPPTGDSGKVDPVYETLRYGTSLALMNRSSFSSTSESPTRSLSERDELTEDGEGSIRSSEEGPGDSASPVFTAPAESEGPGPEEKSPGQQLPKATLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPGENVWRCCQPFSGNKEQGYMSLKENQICVGVGRSKDADGFIRVSSGKKRGLVPVDALTEI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33689 TOB1::SYNRG ENSG00000141232.5::ENSG00000275066.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2511 FALSE NA FALSE NA TOB1 ENSG00000141232.5 protein_coding - - chr17:50862223-50867978:- chr17:50866058:- chr17:48939584-48945339:- chr17:48943419:- SYNRG ENSG00000275066.5 protein_coding - - chr17:37514807-37609472:- chr17:37520648:- chr17:35874910-35969520:- chr17:35880751:- chr17:50864015,chr17:50864017 chr17:37525309,chr17:37525308 NA NA chr17:48941376,chr17:48941378 chr17:35885412,chr17:35885411 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:13.25Mb] 226 29 226 29 ONLY_REF_SPLICE YES_LDAS 3.1855 GT 1.4566 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33690 ZMYND8::CEP250 ENSG00000101040.20::ENSG00000126001.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2507 TRUE 4596 TRUE 1741 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47224317:- chr20:45837859-45985633:- chr20:45852970:- CEP250 ENSG00000126001.17 protein_coding + + chr20:35455164-35519280:+ chr20:35490637:+ chr20:34042985-34107108:+ chr20:34078463:+ chr20:47221457,chr20:47221457,chr20:47221459,chr20:47221465,chr20:47221459 chr20:35482205,chr20:35482210,chr20:35482203,chr20:35482203,chr20:35482205 NA NA chr20:45850108,chr20:45850108,chr20:45850110,chr20:45850116,chr20:45850110 chr20:34070030,chr20:34070035,chr20:34070028,chr20:34070028,chr20:34070030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF3544|40-80|0.52^PHD|118-157|1.5e-09^zf-MYND|118-137|5.1^Bromodomain|190-266|9.8e-20^LptF_LptG|243-260|0.56^zf-MYND|281-292|7^PHD|291-301|2^PWWP|307-375|3.6e-10^MUM1-like_PWWP|307-332|5.1e-05^DUF3544|449-646|4.4e-97^DUF3544|679-693|3.2^DUF3544|774-870|7^LptF_LptG|840-911|0.0014^PWWP|846-898|0.43^PWWP|998-1022|6.4^PHD|1055-1067|7^zf-MYND|1055-1089|6.8e-08^DUF3544|1095-1151|1.9^DUF3544|1200-1218|7 none ["ZMYND8:Oncogene"];["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:11.69Mb] 217 324 217 316.76 ONLY_REF_SPLICE YES_LDAS 6.6676 GT 1.8295 AG 1.8062 ENST00000536340.5 1-3277 ENST00000397527.6 2587-7329 chr20|-|[0]47224317-47224556[1]|[0]47227203-47227281[0]|[2]47229726-47229806[0]|[2]47236326-47236516[1]|[0]47238758-47239138[1]|[0]47246008-47246517[1]|[0]47249287-47249439[1]|[0]47262288-47262428[1]|[0]47276314-47276795[2]|[1]47282102-47282217[0]|[2]47283571-47283648[0]|[2]47287229-47287284[1]|[0]47290187-47290274[0]|[2]47291796-47291888[0]|[2]47294666-47294779[0]|[2]47298729-47298947[0]|[2]47310056-47310204[1]|[0]47347856-47347926[2]|[1]47356380-47356414[0]<==>chr20|+|[0]35490637-35490804[2]|[0]35491212-35491346[2]|[0]35493429-35493572[2]|[0]35494524-35494657[1]|[2]35496577-35496715[2]|[0]35497719-35498067[0]|[1]35498595-35498716[2]|[0]35500049-35500169[0]|[1]35501845-35501966[2]|[0]35502390-35505005[2]|[0]35507738-35507851[2]|[0]35508035-35508190[2]|[0]35508943-35509044[2]|[0]35509998-35510054[2]|[0]35511363-35511626[2] atggtgtttctggaagagtttgaagctagatcctgcttggctgaagaggaaataaaaacagaacaggaggtggtagagggcatggatatctctactcgctccaaagatcctggctctgcagagagaacagcccagaaaagaaagttccccagccctccacattcttccaatggccactcgccgcaggacacatcaacaagccccattaaaaagaaaaagaaacctggcttactgaacagtaacaataaggagcagtcagaactaagacatggtccgttttactatatgaagcagccactcaccacagaccctgttgatgttgtaccgcaggatggacggaatgatttctactgctgggtttgtcaccgggaaggccaagtcctttgctgtgagctctgtccccgggtttatcacgctaagtgtctgagactgacatcggaaccagagggggactggttttgtcctgaatgtgagaaaattacagtagcagaatgcatcgagacccagagtaaagccatgacaatgctcaccattgaacagttatcctacctgctcaagtttgccattcagaaaatgaaacagccagggacagatgcattccagaagcccgttccattggaacagcaccctgactatgcggaatacatcttccatccaatggacctttgtacattggaaaagaatgcgaaaaagaaaatgtatggctgcacagaagccttcctggctgatgcaaagtggattttgcacaactgcatcatttataatgggggaaatcacaaattgacgcaaatagcgaaagtagtcatcaaaatctgtgaacatgagatgaatgaaatcgaagtatgtccagaatgttatctagctgcttgccaaaaacgagataactggttttgtgagccttgtagcaatccacatcctttggtctgggccaaactgaaggggtttccattctggcctgcaaaagctctaagggataaagacgggcaggtcgatgcccgattctttggacaacatgacagggcctgggttccaataaataattgctacctcatgtctaaagaaattcctttttctgtgaaaaagactaagagcatcttcaacagtgccatgcaagagatggaggtttacgtggagaacatccgcaggaagtttggggtttttaattactctccatttaggacaccctacacacccaacagccagtatcaaatgctgctcgatcccaccaaccccagcgccggcactgccaagatagacaagcaggagaaggtcaagctcaactttgacatgacggcatcccccaagatcctgatgagcaagcctgtgctgagtgggggcacaggccgccggatttccttgtcggatatgccgcgctcccccatgagcacaaactcttctgtgcacacgggctccgacgtggagcaggatgctgagaagaaggccacgtcgagccacttcagtgcgagcgaggagtccatggacttcctggataagagcacagcttcaccagcctccaccaagacgggacaagcagggagtttatccggcagcccaaagcccttctctcctcaactgtcagctcctatcacgacgaaaacggacaaaacctccaccaccggcagcatcctgaatcttaacctggatcgaagcaaagctgagatggatttgaaggagctgagcgagtcggtccagcaacagtccacccctgttcctctcatctctcccaagcgccagattcgtagcaggttccagctgaatcttgacaagaccatagagagttgcaaagcacaattaggcataaatgaaatctcggaagatgtctatacggccgtagagcacagcgattcggaggattctgagaagtcagatagtagcgatagtgagtatatcagtgatgatgagcagaagtctaagaacgagccagaagacacagaggacaaagaaggttgtcagatggacaaagagccatctgctgttaaaaaaaagcccaagcctacaaacccagtggagattaaagaggagctgaaaagcacgtcaccagccagcgagaaggcagaccctggagcagtcaaggacaaggccagccctgagcctgagaaggacttttccgaaaaggcaaaaccttcacctcaccccataaaggataaactgaagggaaaagatgagacggattccccaacagtccatttgggcctggactctgattcagagagcgaacttgtcatagatttaggagaagaccattctgggcgggagggtcgaaaaaataagaaggaacccaaagaaccatctcccaaacaggatgttgtaggtaaaactccaccatccacgacggtgggcagccattctcccccggaaacaccggtgctcacccgctcttccgcccaaacttccgcggctggcgccacagccaccaccagcacgtcctccacggtcaccgtcacggccccggcccccgccgccacaggaagcccagtgaaaaagcagaggccgcttttaccgaaggagactgccccggccgtgcagcgggtcgtgtggaactcatcaagtaagtttcaaacgtcctcccaaaagtggcacatgcagaagatgcagcgtcagcagcagcagcagcagcagcaaaaccagcagcagcagcctcagtcttcccaggggacgagatatcagaccagacaggctgtgaaagctgtccagcagaaggagatcacacagagcccatccacgtccaccatcaccctggtgaccagcacacagtcatcgcccctggtcaccagctcggggtccatgagcacccttgtgtcctcagtcaacgctgacctgcccatcgccactgcctcagctgatgtcgccgctgatattgccaagtacactagcaaaatgatggatgcaataaaaggaacaatgacagaaatatacaacgatctttctaaaaacactactggaagcacaatagctgagattcgcaggctgaggatcgagatagagaagctccagtggctgcaccagcaagagctctccgaaatgaaacacaacttagagctgaccatggcggagatgcggcagagcctggagcaggagcgggaccggctcatcgccgaggtgaagaagcagctggagttggagaagcagcaggcggtggatgagaccaagaagaagcagtggtgcgccaactgcaagaaggaggccatcttttactgctgttggaacaccagctactgtgactacccctgccagcaagcccactggcctgagcacatgaagtcctgcacccagtcagGAGAAGGAGCGCTCCTGGCACCAGCAGGAGCTGGCAAAGGCTCTGGAGAGCTTAGAAAGGGAAAAAATGGAGCTGGAAATGAGGCTAAAGGAGCAGCAGACAGAAATGGAGGCCATCCAGGCCCAGAGGGAAGAAGAACGGACCCAGGCAGAGAGTGCCCTATGCCAGATGCAGCTGGAAACAGAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGACGCAGAAGGAGCTAGCAGATGCCAGCCAACAACTGGAACGACTGAGGCAGGACATGAAAGTCCAGAAATTAAAGGAGCAGGAGACCACTGGGATACTACAGACCCAGCTCCAGGAGGCTCAACGGGAGCTGAAGGAGGCAGCCCGGCAGCACAGAGATGACCTTGCTGCCCTCCAAGAAGAGAGCAGCTCCCTGCTGCAGGATAAGATGGACCTGCAGAAGCAGGTGGAGGACTTGAAGTCTCAGCTGGTGGCCCAGGATGACTCCCAGAGGCTGGTGGAGCAGGAGGTTCAGGAGAAGCTGAGAGAGACCCAGGAGTATAACCGAATTCAGAAGGAGCTGGAGAGAGAGAAAGCCAGCCTGACTCTCTCACTGATGGAAAAGGAACAGAGACTCCTTGTTTTACAAGAAGCTGACTCTATTCGACAACAAGAGCTGAGTGCCCTGCGCCAGGACATGCAGGAGGCCCAGGGAGAACAGAAAGAGCTCAGTGCTCAGATGGAATTACTAAGGCAAGAGGTGAAGGAAAAGGAGGCTGACTTTCTGGCCCAGGAAGCACAGCTGCTGGAGGAGCTGGAGGCGTCTCATATCACGGAGCAGCAGCTGCGAGCCTCCTTGTGGGCCCAGGAAGCCAAGGCAGCCCAACTACAGCTGCGACTGCGCAGCACAGAGAGCCAGCTAGAAGCGCTGGCCGCAGAGCAGCAGCCCGGGAACCAGGCCCAGGCCCAGGCCCAGCTGGCCAGCCTCTACTCTGCCCTGCAGCAGGCCCTGGGGTCTGTTTGTGAGAGCAGGCCTGAGCTGAGTGGTGGGGGAGACTCTGCTCCTTCCGTCTGGGGCCTTGAGCCAGACCAGAATGGAGCTAGGAGCCTCTTTAAGAGAGGGCCCCTGCTGACTGCTCTCTCCGCTGAGGCAGTAGCATCTGCCCTCCACAAGCTTCATCAAGACCTGTGGAAGACTCAACAGACCCGGGATGTTCTGAGGGATCAGGTCCAGAAACTGGAAGAGCGTCTAACTGATACTGAGGCTGAGAAGAGCCAGGTCCACACAGAGTTGCAGGATCTGCAGAGACAGCTCTCCCAGAATCAGGAAGAGAAATCTAAGTGGGAAGGAAAGCAGAACTCCCTAGAATCTGAGCTGATGGAACTACATGAAACTATGGCATCCTTACAGAGTCGCCTGCGGAGAGCAGAGCTACAGCGAATGGAAGCCCAGGGTGAGCGAGAGTTACTTCAGGCAGCCAAGGAGAACCTGACAGCCCAGGTGGAACACCTGCAAGCAGCTGTCGTAGAAGCCAGGGCTCAGGCAAGTGCTGCTGGCATCCTGGAAGAAGACCTGAGAACGGCTCGCTCAGCACTGAAGCTGAAAAATGAGGAAGTAGAGAGTGAGCGTGAGAGAGCCCAGGCTCTGCAAGAGCAGGGCGAACTGAAGGTGGCCCAAGGGAAGGCTCTGCAAGAGAATTTGGCCCTCCTGACCCAGACCCTAGCTGAAAGAGAAGAGGAGGTGGAGACTCTGCGGGGACAAATCCAGGAACTGGAGAAGCAACGGGAAATGCAGAAGGCTGCTTTGGAATTGCTGTCTCTGGACCTGAAGAAGAGGAACCAAGAGGTAGATCTGCAGCAAGAACAGATTCAGGAGCTAGAGAAGTGTAGGTCTGTTTTAGAGCATCTGCCCATGGCCGTCCAGGAGCGAGAGCAGAAGCTGACTGTGCAGAGGGAGCAGATCAGAGAGCTCGAGAAGGATCGGGAGACTCAGAGGAACGTCTTGGAGCATCAGCTTCTAGAACTTGAGAAGAAAGACCAAATGATTGAGTCCCAGAGAGGACAGGTTCAGGACCTGAAAAAGCAGTTGGTTACTCTGGAATGCCTGGCCCTGGAACTGGAGGAAAACCATCACAAGATGGAGTGCCAGCAAAAACTGATCAAGGAGCTGGAGGGCCAGAGGGAAACCCAGAGAGTGGCTTTGACCCACCTTACGCTGGACCTAGAAGAAAGGAGCCAGGAGCTGCAGGCACAAAGCAGCCAGATCCATGACCTGGAGAGCCACAGCACCGTTCTGGCAAGAGAGCTGCAGGAGAGGGACCAGGAGGTGAAGTCTCAGCGAGAACAGATCGAGGAGCTGCAGAGGCAGAAAGAGCATCTGACTCAGGATCTCGAGAGGAGAGACCAGGAGCTGATGCTGCAGAAGGAGAGGATTCAGGTTCTCGAGGATCAGAGGACCCGGCAGACCAAGATCCTGGAGGAGGACCTGGAACAGATCAAGCTGTCCTTGAGAGAGCGAGGCCGGGAGCTGACCACTCAGAGGCAGCTGATGCAGGAACGGGCAGAGGAAGGGAAGGGCCCAAGTAAAGCACAGCGCGGGAGCCTAGAGCACATGAAGCTGATCCTGCGTGATAAGGAGAAGGAGGTGGAATGTCAGCAGGAGCATATCCATGAACTCCAGGAGCTCAAAGACCAGCTGGAGCAGCAGCTCCAGGGCCTGCACAGGAAGGTAGGTGAGACCAGCCTCCTCCTGTCCCAGCGAGAGCAGGAAATAGTGGTCCTGCAGCAGCAACTGCAGGAAGCCAGGGAACAAGGGGAGCTGAAGGAGCAGTCACTTCAGAGTCAACTGGATGAGGCCCAGAGAGCCCTAGCCCAGAGGGACCAGGAACTGGAGGCTCTGCAGCAAGAACAGCAGCAGGCCCAGGGACAGGAGGAGAGGGTGAAGGAAAAGGCAGACGCCCTCCAGGGAGCTCTGGAGCAAGCCCATATGACACTGAAGGAGCGTCATGGAGAGCTTCAGGACCACAAGGAACAGGCACGAAGGCTGGAGGAAGAGCTGGCAGTGGAGGGACGGCGGGTCCAGGCCCTGGAGGAGGTGCTGGGAGACCTAAGGGCTGAGTCTCGGGAACAGGAGAAAGCTCTGTTGGCCCTCCAGCAGCAGTGTGCTGAGCAGGCACAGGAGCATGAGGTGGAGACCAGGGCCCTGCAGGACAGCTGGCTGCAGGCCCAGGCAGTGCTCAAGGAACGGGACCAGGAGCTGGAAGCTCTGCGGGCAGAAAGTCAGTCCTCCCGGCATCAGGAGGAGGCTGCCCGGGCCCGGGCTGAGGCTCTGCAGGAGGCCCTTGGCAAGGCTCATGCTGCCCTGCAGGGGAAAGAGCAGCATCTCCTCGAGCAGGCAGAATTGAGCCGCAGTCTGGAGGCCAGCACTGCAACCCTGCAAGCCTCCCTGGATGCCTGCCAGGCACACAGTCGGCAGCTGGAGGAGGCTCTGAGGATACAAGAAGGTGAGATCCAGGACCAGGATCTCCGATACCAGGAGGATGTGCAGCAGCTGCAGCAGGCACTTGCCCAGAGGGATGAAGAGCTGAGACATCAGCAGGAACGGGAGCAGCTGCTGGAGAAGTCTCTGGCCCAGAGGGTCCAAGAGAATATGATCCAAGAGAAGCAGAATCTGGGGCAAGAGAGAGAAGAGGAGGAGATAAGGGGCCTTCATCAGAGTGTAAGGGAGCTACAGCTGACTCTAGCCCAAAAGGAACAGGAGATTCTGGAGCTGAGGGAGACCCAGCAAAGGAACAACCTGGAAGCCTTACCCCACAGCCACAAAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTCTTTAGAGCCCAGGCTGCAGCGGGAGCTGGAGCGGCTACAGGCAGCCCTGAGACAGACAGAAGCCAGGGAGATTGAGTGGAGGGAGAAGGCCCAGGACTTGGCACTCTCCCTAGCGCAGACCAAGGCCAGTGTCAGCAGTCTGCAGGAGGTAGCCATGTTCCTACAAGCCTCTGTCCTGGAGCGGGACTCAGAACAGCAAAGGCTGCAGGATGAACTGGAGCTCACCAGACGGGCTCTGGAGAAGGAGCGGCTACACAGCCCAGGTGCAACCAGCACAGCAGAACTGGGGTCCAGAGGGGAGCAGGGTGTGCAGCTGGGAGAGGTCTCAGGAGTGGAGGCTGAGCCTAGTCCTGATGGAATGGAGAAGCAGTCATGGAGACAAAGGCTTGAACACCTGCAGCAAGCAGTGGCCCGGCTGGAGATTGACAGGAGCAGGCTGCAGCGCCACAATGTCCAGCTGCGGAGTACCTTGGAGCAGGTGGAGCGAGAACGGAGGAAGCTGAAGAGGGAGGCCATGCGTGCGGCCCAGGCAGGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAGGATGGGAGAGGACAGAAGAACTCAGATGCCAAGTGTGTGGCTGAACTGCAGAAAGAGGTGGTCCTGCTGCAAGCTCAGCTGACTTTGGAGCGGAAGCAGAAGCAGGACTACATCACCCGCTCAGCACAGACCAGCCGTGAGCTAGCAGGCCTGCACCACAGCCTCTCACACTCACTTCTTGCCGTGGCCCAGGCCCCTGAGGCCACTGTCCTGGAGGCAGAGACCCGCAGGCTGGATGAGTCCCTGACTCAAAGTCTGACATCCCCAGGGCCAGTCCTGCTACACCCCAGCCCCAGCACTACCCAAGCCGCCTCCAGGTAG MVFLEEFEARSCLAEEEIKTEQEVVEGMDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDRAWVPINNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNSQYQMLLDPTNPSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPRSPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPASTKTGQAGSLSGSPKPFSPQLSAPITTKTDKTSTTGSILNLNLDRSKAEMDLKELSESVQQQSTPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKPTNPVEIKEELKSTSPASEKADPGAVKDKASPEPEKDFSEKAKPSPHPIKDKLKGKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQDVVGKTPPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPKETAPAVQRVVWNSSSKFQTSSQKWHMQKMQRQQQQQQQQNQQQQPQSSQGTRYQTRQAVKAVQQKEITQSPSTSTITLVTSTQSSPLVTSSGSMSTLVSSVNADLPIATASADVAADIAKYTSKMMDAIKGTMTEIYNDLSKNTTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQSGEGALLAPAGAGKGSGELRKGKNGAGNEAKGAADRNGGHPGPEGRRTDPGRECPMPDAAGNREGESIPPGDTAADAEGASRCQPTTGTTEAGHESPEIKGAGDHWDTTDPAPGGSTGAEGGSPAAQR*PCCPPRREQLPAAG*DGPAEAGGGLEVSAGGPG*LPEAGGAGGSGEAERDPGV*PNSEGAGERESQPDSLTDGKGTETPCFTRS*LYSTTRAECPAPGHAGGPGRTERAQCSDGITKARGEGKGG*LSGPGSTAAGGAGGVSYHGAAAASLLVGPGSQGSPTTAATAQHREPARSAGRRAAAREPGPGPGPAGQPLLCPAAGPGVCL*EQA*AEWWGRLCSFRLGP*ARPEWS*EPL*ERAPADCSLR*GSSICPPQASSRPVEDSTDPGCSEGSGPETGRASN*Y*G*EEPGPHRVAGSAETALPESGREI*VGRKAELPRI*ADGTT*NYGILTESPAESRATANGSPG*ARVTSGSQGEPDSPGGTPASSCRRSQGSGKCCWHPGRRPENGSLSTEAEK*GSRE*A*ESPGSARAGRTEGGPREGSAREFGPPDPDPS*KRRGGGDSAGTNPGTGEATGNAEGCFGIAVSGPEEEEPRGRSAARTDSGAREV*VCFRASAHGRPGARAEADCAEGADQRAREGSGDSEERLGASASRT*EERPND*VPERTGSGPEKAVGYSGMPGPGTGGKPSQDGVPAKTDQGAGGPEGNPESGFDPPYAGPRRKEPGAAGTKQPDP*PGEPQHRSGKRAAGEGPGGEVSARTDRGAAEAERASDSGSREERPGADAAEGEDSGSRGSEDPADQDPGGGPGTDQAVLERARPGADHSEAADAGTGRGREGPK*STAREPRAHEADPA**GEGGGMSAGAYP*TPGAQRPAGAAAPGPAQEGR*DQPPPVPARAGNSGPAAATAGSQGTRGAEGAVTSESTG*GPESPSPEGPGTGGSAARTAAGPGTGGEGEGKGRRPPGSSGASPYDTEGASWRASGPQGTGTKAGGRAGSGGTAGPGPGGGAGRPKG*VSGTGESSVGPPAAVC*AGTGA*GGDQGPAGQLAAGPGSAQGTGPGAGSSAGRKSVLPASGGGCPGPG*GSAGGPWQGSCCPAGERAASPRAGRIEPQSGGQHCNPASLPGCLPGTQSAAGGGSEDTRR*DPGPGSPIPGGCAAAAAGTCPEG*RAETSAGTGAAAGEVSGPEGPREYDPREAESGARERRGGDKGPSSECKGATADSSPKGTGDSGAEGDPAKEQPGSLTPQPQNLPNGGTISKT*FFRAQAAAGAGAATGSPETDRSQGD*VEGEGPGLGTLPSADQGQCQQSAGGSHVPTSLCPGAGLRTAKAAG*TGAHQTGSGEGAATQPRCNQHSRTGVQRGAGCAAGRGLRSGG*A*S*WNGEAVMETKA*TPAASSGPAGD*QEQAAAPQCPAAEYLGAGGARTEEAEEGGHACGPGRVPRDQQGHGFFTHTAGWERTEELRCQVCG*TAERGGPAASSADFGAEAEAGLHHPLSTDQP*ASRPAPQPLTLTSCRGPGP*GHCPGGRDPQAG*VPDSKSDIPRASPATPQPQHYPSRLQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33691 STX16::RAE1 ENSG00000124222.23::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4598 TRUE 1742 STX16 ENSG00000124222.23 protein_coding + + chr20:58651272-58679526:+ chr20:58659634:+ chr20:57226328-57254582:+ chr20:57234690:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.27Mb] 131 143 131 106.15 ONLY_REF_SPLICE YES_LDAS 2.9624 GT 1.7465 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33692 MED1::ACSF2 ENSG00000125686.12::ENSG00000167107.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39439165:- chr17:37560538-37607525:- chr17:37595418:- ACSF2 ENSG00000167107.13 protein_coding + + chr17:50426158-50474845:+ chr17:50471028:+ chr17:48503519-48552206:+ chr17:48548389:+ chr17:39438591,chr17:39438713,chr17:39438717,chr17:39438732 chr17:50468384,chr17:50468384,chr17:50468380,chr17:50468366 NA NA chr17:37594844,chr17:37594966,chr17:37594970,chr17:37594985 chr17:48545745,chr17:48545745,chr17:48545741,chr17:48545727 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Med1|13-54|0.75^Med1|60-426|3.2e-56^DUF34_NIF3|60-147|1.5e-05 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:10.97Mb] 105 29 105 29 ONLY_REF_SPLICE YES_LDAS 1.674 GT 1.9656 AG 1.9656 ENST00000394287.7 1-428 ENST00000510262.1 281-314 chr17|-|[1]39439165-39439193[0]|[2]39440386-39440518[2]|[1]39440623-39440677[1]|[0]39443550-39443628[0]|[2]39447798-39447904[1]|[0]39451038-39451062[0]<==>chr17|+|[2]50471028-50471061[2] atgaaagctcagggggaaaccgaggagtcagaaaagctgagtaagatgagttctctcctggaacggctccatgcaaaatttaaccaaaatagaccctggagtgaaaccattaagcttgtgcgtcaagtcatggagaagagggttgtgatgagttctggagggcatcaacatttggtcagctgtttggagacattgcagaaggctctcaaagtaacatctttaccagcaatgactgatcgtttggagtccatagcaagacagaatggactgggctctcatctcagtgccagtggcactgaatgttacatcacgtcagatatgttctatgtggaagtgcagttagatcctgcaggacagctttgtgatgtaaaagtggctcaccatggggagaatcctgtgagctgtccggagcttgtacagcagctaagGTTGCTTATGGAACCACAGAGAACAGTCCCGTGA MKAQGETEESEKLSKMSSLLERLHAKFNQNRPWSETIKLVRQVMEKRVVMSSGGHQHLVSCLETLQKALKVTSLPAMTDRLESIARQNGLGSHLSASGTECYITSDMFYVEVQLDPAGQLCDVKVAHHGENPVSCPELVQQLRLLMEPQRTVP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33693 STARD3::DOK5 ENSG00000131748.16::ENSG00000101134.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2517 FALSE NA FALSE NA STARD3 ENSG00000131748.16 protein_coding + + chr17:39637090-39664201:+ chr17:39637231:+ chr17:37793343-37820454:+ chr17:37793484:+ DOK5 ENSG00000101134.12 protein_coding + + chr20:54475593-54651169:+ chr20:54643458:+ chr20:53092132-53267708:+ chr20:53259997:+ chr17:39642423,chr17:39642424 chr20:54632762,chr20:54632760 NA NA chr17:37798676,chr17:37798677 chr20:53249301,chr20:53249299 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["STARD3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr17--chr20] 102 11 102 11 ONLY_REF_SPLICE YES_LDAS 1.4116 GT 1.8892 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33694 MED1::STXBP4 ENSG00000125686.12::ENSG00000166263.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2516 FALSE NA FALSE NA MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39451038:- chr17:37560538-37607525:- chr17:37607291:- STXBP4 ENSG00000166263.13 protein_coding + + chr17:54968727-55173632:+ chr17:55141310:+ chr17:53046088-53250993:+ chr17:53218671:+ chr17:39448897,chr17:39448899 chr17:55119469,chr17:55119467 NA NA chr17:37605150,chr17:37605152 chr17:53196830,chr17:53196828 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:15.52Mb] 96 33 96 33 ONLY_REF_SPLICE YES_LDAS 1.6114 GT 1.3996 AG 1.7968 ENST00000581334.1 1-25 ENST00000434978.6 1424-1596 chr17|-|[0]39451038-39451062[0]<==>chr17|+|[1]55141310-55141367[1]|[2]55159797-55159911[2] atgaaagctcagggggaaaccgaggGTTTACCTTATGGGTGGGAGGAAGCTTACACAGCAGATGGAATCAAGTACTTCATCAATCATGTAACACAGACTACATCCTGGATCCATCCCGTGATGAGTGTCCTGAATCTATCTCGCTCAGAGGAGAATGAAGAGGATTGCTCTAGAGAACTCCCCAACCAGAAAAGTTGA MKAQGETEGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVMSVLNLSRSEENEEDCSRELPNQKS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33695 RAB22A::MYO9B ENSG00000124209.4::ENSG00000099331.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2515 FALSE NA FALSE NA RAB22A ENSG00000124209.4 protein_coding + + chr20:58309715-58367507:+ chr20:58311122:+ chr20:56884771-56942563:+ chr20:56886178:+ MYO9B ENSG00000099331.14 protein_coding + + chr19:17075777-17214537:+ chr19:17145397:+ chr19:17186587-17325346:+ chr19:17256207:+ chr20:58315256,chr20:58315256 chr19:17106285,chr19:17106282 NA NA chr20:56890312,chr20:56890312 chr19:17217095,chr19:17217092 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Arf-PARTIAL|4-116~|1.7e-17^RsgA_GTPase|5-27|8e-05^AAA_7|5-57|1.2e-05^SpoIVA_ATPase|6-35|0.024^Ras-PARTIAL|7-116~|2.1e-59^Roc-PARTIAL|7-116~|3.1e-40^GTP_EFTU|7-26|0.85^MMR_HSR1|7-113|1.1e-08^Gtr1_RagA-PARTIAL|7-116~|2e-08^DUF815|7-26|0.002^NTPase_1-PARTIAL|8-116~|3.1e-05^AAA_16|8-28|4.1e-05^AAA_5|8-26|0.0002^GTP_EFTU-PARTIAL|39-116~|2e-10^SpoIVA_ATPase-PARTIAL|84-116~|0.0011^DUF815-PARTIAL|89-116~|0.028^RsgA_GTPase-PARTIAL|109-116~|0.0024^MMR_HSR1_Xtn-PARTIAL|115-116~|0.00015 Myosin_head-PARTIAL|~841-941|5.7e-36^RH_dom|857-939|1.8^RA|911-934|0.0045^IQ|958-976|2.4e-05^IQ|981-999|2.3e-07^IQ|1002-1022|5.1e-07^RGM_N|1022-1174|0.00011^IQ|1026-1044|3.1e-07^RGM_N|1209-1229|2.9^RGM_N|1586-1649|0.98^RH_dom|1593-1682|1.1e-05^C1_1|1633-1682|7.3e-09^IQ|1676-1681|5.7^RhoGAP|1713-1859|5.4e-49^AAA_16|1792-1826|2.7^nSTAND3|1874-1900|3.1 ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr19] 88 24 88 24 ONLY_REF_SPLICE YES_LDAS 1.3991 GT 1.6895 AG 1.9656 ENST00000244040.4 1-116 ENST00000682292.1 841-6474 chr20|+|[0]58309977-58310012[2]|[0]58311043-58311122[1]<==>chr19|+|[0]17145397-17145491[1]|[2]17152644-17152706[1]|[2]17153967-17154066[2]|[0]17154315-17154415[1]|[2]17156909-17157038[2]|[0]17159395-17159484[2]|[0]17162350-17162466[2]|[0]17162988-17163122[2]|[0]17167943-17168064[1]|[2]17172336-17172477[2]|[0]17172759-17172963[0]|[1]17175663-17175741[1]|[2]17180927-17181040[1]|[2]17183829-17183868[2]|[0]17184865-17184987[2]|[0]17185921-17186001[2]|[0]17187935-17188045[2]|[0]17191097-17191219[2]|[0]17192746-17193062[1]|[2]17194556-17195473[1]|[2]17197792-17197858[2]|[0]17198184-17198308[1]|[2]17200293-17200426[0]|[1]17200639-17200829[2]|[0]17201926-17202024[2]|[0]17202130-17202303[2]|[0]17202842-17202883[2]|[0]17203147-17203258[0]|[1]17205263-17205336[2]|[0]17205960-17206152[0]|[1]17206248-17206376[0]|[1]17206679-17206784[1]|[2]17207113-17207244[1]|[2]17209586-17209709[2]|[0]17210333-17210380[2]|[0]17210715-17210848[1]|[2]17211647-17211774[0]|[1]17211895-17212310[2] atggcgctgagggagctcaaagtgtgtctgctcggggatacaggtgtaggtaaatcgagtattgtgtggcggtttgtggaagacagttttgatccaaacatcaacccaacaataggGCTTTTGGAAATGCCAAGACAGCCCACAACAACAACTCCAGCCGGTTTGGGAAATTCATCCAAGTCAGCTACCTAGAGAGTGGCATCGTGAGAGGAGCTGTCGTCGAGAAATATCTGCTTGAAAAGTCTCGCCTGGTGTCTCAGGAGAAGGATGAGAGGAACTACCATGTGTTTTATTATTTGTTACTTGGGGTCAGCGAGGAAGAGCGCCAAGAATTTCAGCTCAAGCAGCCTGAAGATTATTTCTACCTCAACCAGCATAACTTGAAGATTGAAGATGGGGAGGACCTGAAGCATGACTTTGAGAGGCTCAAGCAGGCCATGGAGATGGTGGGCTTCCTCCCCGCCACCAAGAAGCAGATTTTTGCCGTCCTCTCGGCCATCCTGTACCTGGGCAACGTCACTTATAAGAAGAGAGCTACAGGCCGAGAGGAAGGGTTGGAGGTCGGGCCACCCGAGGTGCTGGACACCCTGTCGCAGCTTCTGAAGGTGAAGCGAGAAATCTTGGTGGAGGTTCTGACCAAAAGAAAAACGGTGACCGTCAACGACAAGCTTATCCTTCCCTACAGCCTCAGCGAGGCCATCACTGCCCGCGACTCCATGGCCAAGTCTCTGTACAGCGCCCTGTTCGACTGGATTGTGCTGCGGATCAACCACGCACTCCTCAACAAGAAGGACGTGGAAGAGGCAGTCTCGTGCCTGTCCATTGGGGTCCTGGACATCTTCGGGTTTGAAGACTTCGAGAGGAACAGCTTTGAGCAGTTCTGCATCAACTACGCCAATGAGCAGCTGCAGTATTACTTCAACCAGCACATCTTCAAGCTGGAGCAGGAGGAATATCAGGGCGAGGGGATCACGTGGCACAACATCGGCTACACAGACAATGTCGGCTGCATCCATCTCATCAGCAAGAAACCCACGGGCCTCTTCTACCTGCTGGACGAGGAGAGCAACTTCCCCCACGCCACGAGCCAGACCCTGCTGGCCAAGTTCAAACAGCAACATGAGGACAATAAGTACTTCCTGGGCACCCCGGTCATGGAGCCAGCTTTCATCATCCAGCACTTCGCAGGGAAGGTGAAATATCAGATCAAGGACTTCCGGGAGAAGAACATGGACTACATGCGGCCAGACATCGTGGCCCTGCTGCGGGGCAGTGACAGCTCCTACGTGCGGGAGCTCATCGGCATGGACCCCGTGGCCGTGTTCCGCTGGGCCGTGCTCCGGGCTGCTATCCGGGCCATGGCAGTGCTTCGGGAGGCCGGACGCCTGCGGGCCGAGAGGGCCGAAAAGGCTGCAGGTATGAGCAGCCCTGGTGCCCAAAGTCACCCAGAAGAGCTGCCAAGAGGAGCCAGCACCCCTTCGGAAAAACTTTACCGCGATTTGCATAACCAAATGATCAAGAGCATCAAAGGATTGCCCTGGCAGGGCGAGGACCCCCGTAGCCTTCTCCAGTCCCTCAGTCGGCTCCAGAAACCCCGCGCCTTCATCCTGAAAAGTAAAGGTATCAAACAAAAGCAGATCATTCCAAAGAACCTACTGGACTCCAAGTCCCTGAAACTCATCATCAGCATGACTCTGCACGACCGCACCACCAAGTCCCTACTGCACCTGCACAAGAAGAAAAAGCCACCAAGCATCAGCGCCCAGTTCCAGACATCCCTTAACAAGCTCTTGGAGGCACTGGGGAAGGCGGAGCCCTTCTTTATCCGCTGCATCCGTTCCAATGCTGAAAAGAAAGAGCTGTGCTTTGACGACGAGCTGGTCCTGCAGCAGCTGCGCTACACCGGCATGCTGGAGACCGTGCGCATCCGGAGGTCAGGGTACAGCGCCAAGTACACGTTCCAGGATTTCACCGAGCAGTTCCAGGTGCTCCTGCCCAAGGATGCCCAGCCCTGCAGGGAGGTCATCTCCACCCTCCTGGAGAAAATGAAGATAGACAAGAGGAACTACCAGATCGGGAAGACCAAGGTCTTCCTGAAGGAGACGGAGCGGCAAGCCCTGCAGGAGACGCTGCACCGGGAGGTGGTGCGGAAAATCCTGCTGCTGCAGAGCTGGTTCCGGATGGTGCTGGAGCGTCGGCACTTCCTGCAGATGAAGCGGGCCGCCGTCACCATCCAGGCCTGCTGGCGGTCCTACCGGGTCCGGAGGGCGCTGGAGAGGACGCAGGCTGCCGTGTACCTCCAGGCCTCATGGAGGGGCTACTGGCAGCGGAAGCTCTACCGGCACCAGAAACAGAGCATCATCCGCCTGCAGAGCCTGTGTCGGGGGCACCTGCAGCGCAAGAGCTTCAGCCAGATGATCTCGGAGAAGCAGAAGGCAGAAGAGAAGGAGAGGGAAGCCCTGGAAGCCGCAAGAGCAGGTGCTGAGGAGGGCGGACAGGGTCAGGCGGCTGGAGGGCAGCAGGTAGCTGAGCAGGGGCCGGAGCCAGCGGAGGATGGCGGGCACCTGGCATCGGAGCCTGAGGTGCAGCCAAGTGACAGGTCCCCCCTAGAGCACTCCTCACCTGAGAAGGAGGCCCCAAGCCCAGAGAAGACTCTCCCACCCCAGAAAACCGTGGCGGCTGAAAGTCACGAGAAAGTCCCCAGCAGCCGGGAGAAGCGTGAGTCGCGTCGGCAAAGAGGGCTGGAGCACGTCAAGTTCCAGAACAAACACATCCAGTCCTGCAAGGAGGAGAGTGCCCTCAGAGAACCTTCCAGAAGGGTCACCCAGGAGCAAGGGGTGAGTCTCCTGGAAGACAAAAAGGAGAGCAGAGAAGATGAAACCCTTCTAGTCGTAGAGACGGAGGCTGAGAACACATCTCAAAAGCAGCCCACAGAGCAACCCCAGGCCATGGCAGTTGGCAAGGTCTCTGAAGAAACTGAGAAGACGCTGCCCAGTGGGAGCCCCAGGCCTGGCCAGTTGGAGCGGCCGACCAGCCTGGCCCTGGACAGCAGGGTCAGCCCACCGGCCCCTGGCAGCGCCCCCGAGACCCCCGAGGACAAGAGCAAACCATGTGGCAGCCCAAGGGTTCAGGAAAAGCCCGACAGCCCCGGAGGCTCCACGCAGATCCAGCGGTACCTGGACGCCGAGCGGCTGGCCAGCGCCGTGGAACTGTGGCGGGGCAAGAAGCTGGTGGCCGCCGCCAGCCCTAGTGCCATGCTCAGCCAGTCCCTGGACCTCAGCGACAGACACCGGGCCACAGGGGCCGCCCTCACGCCCACAGAGGAGAGGCGCACCTCCTTCTCCACGAGCGACGTCTCCAAGCTCCTCCCGTCCCTGGCCAAGGCTCAGCCTGCAGCAGAAACCACGGACGGAGAGCGAAGTGCGAAAAAGCCAGCTGTCCAGAAGAAGAAGCCAGGCGACGCATCCTCCCTCCCAGACGCAGGGCTGTCCCCGGGCTCTCAGGTCGACTCTAAATCCACGTTTAAGAGGCTTTTTCTGCATAAAACCAAGGATAAAAAATACAGCCTGGAGGGCGCAGAGGAGCTGGAGAATGCAGTGTCCGGGCACGTGGTGCTGGAAGCCACCACCATGAAGAAGGGCCTGGAAGCCCCCTCCGGACAGCAGCATCGCCACGCTGCAGGTGAGAAGCGCACCAAGGAACCAGGAGGCAAAGGGAAGAAGAACCGAAATGTCAAGATTGGGAAGATCACAGTGTCAGAGAAGTGGCGGGAATCGGTGTTCCGCCAGATCACCAACGCCAATGAGCTCAAGTACCTGGACGAGTTCCTGCTCAACAAGATAAATGACCTCCGTTCCCAGAAGACGCCCATTGAGAGCTTGTTTATCGAAGCCACCGAGAAGTTCAGGAGCAACATCAAAACGATGTACTCTGTCCCGAACGGGAAGATCCACGTGGGCTACAAGGATCTGATGGAGAACTACCAGATCGTCGTCAGCAACCTGGCCACTGAGCGTGGCCAGAAGGACACCAACCTGGTCCTCAACCTCTTCCAGTCACTGCTAGATGAGTTCACCCGTGGCTACACCAAGAACGACTTCGAGCCAGTGAAGCAGAGCAAAGCTCAGAAGAAGAAGCGGAAGCAGGAGCGTGCTGTCCAGGAGCACAACGGGCACGTGTTCGCCAGCTACCAGGTTAGCATCCCGCAGTCGTGCGAGCAGTGCCTCTCCTATATCTGGCTCATGGACAAGGCCCTGCTCTGCAGCGTGTGCAAGATGACCTGCCACAAGAAGTGCGTGCACAAGATTCAGAGCCACTGCTCCTACACCTACGGGAGGAAGGGCGAGCCAGGCGTTGAGCCTGGCCACTTCGGCGTGTGCGTAGACAGCCTGACCAGCGACAAGGCCTCGGTGCCCATCGTGCTGGAGAAGCTCCTGGAACACGTGGAGATGCACGGCCTGTACACCGAGGGCCTCTACCGCAAGTCGGGTGCTGCCAACCGCACTCGGGAGCTCCGGCAGGCGCTGCAGACAGACCCCGCAGCAGTCAAGCTGGAGAACTTCCCCATCCACGCCATCACAGGGGTGCTGAAGCAGTGGCTGCGGGAGCTGCCCGAGCCCCTCATGACCTTCGCACAGTACGGCGACTTCCTCCGAGCCGTCGAGCTGCCGGAGAAGCAGGAGCAGCTGGCTGCCATCTATGCCGTCCTGGAGCACCTTCCAGAAGCCAACCACAACTCCCTGGAGAGACTCATCTTCCACCTTGTCAAGGTGGCCCTGCTCGAGGATGTCAACCGCATGTCACCTGGGGCGCTGGCCATTATCTTCGCACCCTGCCTCCTGCGCTGCCCTGACAACTCGGACCCGCTGACCAGCATGAAGGACGTCCTCAAGATCACCACGTGCGTGGAGATGCTGATCAAGGAGCAGATGAGGAAATACAAAGTGAAGATGGAGGAGATCAGCCAACTGGAGGCTGCAGAGAGTATCGCCTTCCGCAGGCTTTCGCTCCTGCGACAAAATGCTCCATGGCCTCTCAAACTGGGGTTTTCGTCTCCCTATGAGGGGGTCCTGAACAAGAGCCCCAAGACCCGGGACATCCAGGAGGAGGAGCTGGAGGTGCTGCTGGAGGAGGAGGCAGCCGGCGGCGATGAGGACCGGGAAAAGGAGATTCTCATTGAACGGATCCAGTCCATCAAGGAGGAGAAGGAGGACATCACCTACCGGCTGCCGGAGCTGGACCCAAGGGGCTCGGACGAGGAGAACCTGGACTCGGAGACGTCGGCCAGCACCGAGAGCCTGCTGGAGGAGCGGGCCGGGCGGGGGGCCTCGGAAGGGCCCCCTGCGCCTGCTCTCCCTTGCCCCGGCGCGCCCACCCCGAGCCCCCTCCCCACCGTGGCCGCCCCTCCACGACGAAGGCCGTCGTCCTTCGTAACGGTCAGAGTGAAGACCCCCCGGCGGACCCCCATCATGCCCACGGCCAACATCAAGCTCCCACCAGGCCTGCCCTCCCACCTGCCTCGCTGGGCACCGGGTGCCCGGGAGGCGGCTGCCCCAGTGCGGCGCCGGGAGCCACCTGCCCGCCGCCCGGACCAGATACATTCCGTGTACATCACGCCCGGGGCAGACCTGCCAGTGCAGGGCGCCCTGGAGCCCCTAGAAGAGGATGGCCAGCCACCTGGGGCCAAGCGGAGGTACTCGGATCCCCCAACGTACTGCCTGCCCCCCGCCTCGGGCCAGACCAATGGCTGA MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGLLEMPRQPTTTTPAGLGNSSKSAT*RVAS*EELSSRNICLKSLAWCLRRRMRGTTMCFIICYLGSARKSAKNFSSSSLKIISTSTSIT*RLKMGRT*SMTLRGSSRPWRWWASSPPPRSRFLPSSRPSCTWATSLIRRELQAERKGWRSGHPRCWTPCRSF*R*SEKSWWRF*PKEKR*PSTTSLSFPTASARPSLPATPWPSLCTAPCSTGLCCGSTTHSSTRRTWKRQSRACPLGSWTSSGLKTSRGTALSSSASTTPMSSCSITSTSTSSSWSRRNIRARGSRGTTSATQTMSAASISSARNPRASSTCWTRRATSPTPRARPCWPSSNSNMRTISTSWAPRSWSQLSSSSTSQGR*NIRSRTSGRRTWTTCGQTSWPCCGAVTAPTCGSSSAWTPWPCSAGPCSGLLSGPWQCFGRPDACGPRGPKRLQV*AALVPKVTQKSCQEEPAPLRKNFTAICITK*SRASKDCPGRARTPVAFSSPSVGSRNPAPSS*KVKVSNKSRSFQRTYWTPSP*NSSSA*LCTTAPPSPYCTCTRRKSHQASAPSSRHPLTSSWRHWGRRSPSLSAASVPMLKRKSCALTTSWSCSSCATPACWRPCASGGQGTAPSTRSRISPSSSRCSCPRMPSPAGRSSPPSWRK*R*TRGTTRSGRPRSS*RRRSGKPCRRRCTGRWCGKSCCCRAGSGWCWSVGTSCR*SGPPSPSRPAGGPTGSGGRWRGRRLPCTSRPHGGATGSGSSTGTRNRASSACRACVGGTCSARASAR*SRRSRRQKRRRGKPWKPQEQVLRRADRVRRLEGSR*LSRGRSQRRMAGTWHRSLRCSQVTGPP*STPHLRRRPQAQRRLSHPRKPWRLKVTRKSPAAGRSVSRVGKEGWSTSSSRTNTSSPARRRVPSENLPEGSPRSKG*VSWKTKRRAEKMKPF*S*RRRLRTHLKSSPQSNPRPWQLARSLKKLRRRCPVGAPGLASWSGRPAWPWTAGSAHRPLAAPPRPPRTRANHVAAQGFRKSPTAPEAPRRSSGTWTPSGWPAPWNCGGARSWWPPPALVPCSASPWTSATDTGPQGPPSRPQRRGAPPSPRATSPSSSRPWPRLSLQQKPRTESEVRKSQLSRRRSQATHPPSQTQGCPRALRSTLNPRLRGFFCIKPRIKNTAWRAQRSWRMQCPGTWCWKPPP*RRAWKPPPDSSIATLQVRSAPRNQEAKGRRTEMSRLGRSQCQRSGGNRCSARSPTPMSSSTWTSSCSTR*MTSVPRRRPLRACLSKPPRSSGATSKRCTLSRTGRSTWATRI*WRTTRSSSATWPLSVARRTPTWSSTSSSHC*MSSPVATPRTTSSQ*SRAKLRRRSGSRSVLSRSTTGTCSPATRLASRSRASSASPISGSWTRPCSAACAR*PATRSACTRFRATAPTPTGGRASQALSLATSACA*TA*PATRPRCPSCWRSSWNTWRCTACTPRASTASRVLPTALGSSGRRCRQTPQQSSWRTSPSTPSQGC*SSGCGSCPSPS*PSHSTATSSEPSSCRRSRSSWLPSMPSWSTFQKPTTTPWRDSSSTLSRWPCSRMSTACHLGRWPLSSHPASCAALTTRTR*PA*RTSSRSPRAWRC*SRSR*GNTK*RWRRSANWRLQRVSPSAGFRSCDKMLHGLSNWGFRLPMRGS*TRAPRPGTSRRRSWRCCWRRRQPAAMRTGKRRFSLNGSSPSRRRRRTSPTGCRSWTQGARTRRTWTRRRRPAPRACWRSGPGGGPRKGPLRLLSLAPARPPRAPSPPWPPLHDEGRRPS*RSE*RPPGGPPSCPRPTSSSHQACPPTCLAGHRVPGRRLPQCGAGSHLPAARTRYIPCTSRPGQTCQCRAPWSP*KRMASHLGPSGGTRIPQRTACPPPRARPMA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33696 STX16::RAE1 ENSG00000124222.23::ENSG00000101146.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4598 TRUE 1742 STX16 ENSG00000124222.23 protein_coding + + chr20:58651272-58679526:+ chr20:58652087:+ chr20:57226328-57254582:+ chr20:57227143:+ RAE1 ENSG00000101146.13 protein_coding + + chr20:57351223-57379211:+ chr20:57354032:+ chr20:55926279-55954267:+ chr20:55929088:+ chr20:58660837,chr20:58660838 chr20:57352886,chr20:57352884 NA NA chr20:57235893,chr20:57235894 chr20:55927942,chr20:55927940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:1.27Mb] 81 111 81 36.85 ONLY_REF_SPLICE YES_LDAS 1.4721 GT 1.9899 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33697 AHCTF1::NAAA ENSG00000153207.16::ENSG00000138744.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2519 TRUE 4601 TRUE 1744 AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246931578:- chr1:247002400-247095250:- chr1:247094880:- NAAA ENSG00000138744.16 protein_coding - - chr4:75913660-75941013:- chr4:75925811:- chr4:76834813-76862166:- chr4:76846964:- chr1:246923305,chr1:246923305,chr1:246922873,chr1:246923307,chr1:246923307 chr4:75926307,chr4:75926306,chr4:75926306,chr4:75926305,chr4:75926306 NA NA chr1:247086607,chr1:247086607,chr1:247086175,chr1:247086609,chr1:247086609 chr4:76847460,chr4:76847459,chr4:76847459,chr4:76847458,chr4:76847459 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr4] 72 45 72 43.5 ONLY_REF_SPLICE YES_LDAS 1.4428 GT 1.7232 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33698 GLB1::CMTM7 ENSG00000170266.16::ENSG00000153551.14 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2518 FALSE NA FALSE NA GLB1 ENSG00000170266.16 protein_coding - - chr3:32996609-33097202:- chr3:33014056:- chr3:33038101-33138694:- chr3:33055548:- CMTM7 ENSG00000153551.14 protein_coding + + chr3:32391698-32483067:+ chr3:32441840:+ chr3:32433190-32524559:+ chr3:32483332:+ chr3:33006257,chr3:33006249,chr3:33006239,chr3:33006233,chr3:33006202,chr3:33006195 chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776,chr3:32431776 NA NA chr3:33047749,chr3:33047741,chr3:33047731,chr3:33047725,chr3:33047694,chr3:33047687 chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268,chr3:32473268 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Glyco_hydro_35|40-356|1.8e-131^Glyco_hydro_42|59-148|1.8e-10^BetaGal_ABD2|298-323|0.73^BetaGal_ABD_1|403-515|4.7e-52^BetaGal_ABD2|410-433|0.13^BetaGal_ABD2|547-619|5.7e-12^BetaGal_gal-bd|549-610|1.4e-27 MARVEL-PARTIAL|~28-68|3.3e-14 ["GLB1:Oncogene"];["CMTM7:Oncogene"];["Klijn_CellLines","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr3:0.51Mb] 66 35 66 35 ONLY_REF_SPLICE YES_LDAS 1.2617 GT 1.9329 AG 1.9086 ENST00000307363.10 1-1734 ENST00000465248.1 28-492 chr3|-|[2]33014056-33014310[0]|[2]33016709-33016840[0]|[2]33018448-33018561[0]|[2]33021566-33021655[0]|[2]33024251-33024325[0]|[2]33046120-33046232[1]|[0]33051758-33051798[2]|[1]33051883-33052004[0]|[2]33053491-33053549[1]|[0]33058089-33058269[0]|[2]33065463-33065557[1]|[0]33068230-33068290[0]|[2]33068820-33068970[2]|[1]33072544-33072713[0]|[2]33097011-33097085[0]<==>chr3|+|[0]32441840-32442013[2]|[0]32454241-32454531[2] atgccggggttcctggttcgcatcctccctctgttgctggttctgctgcttctgggccctacgcgcggcttgcgcaatgccacccagaggatgtttgaaattgactatagccgggactccttcctcaaggatggccagccatttcgctacatctcaggaagcattcactactcccgtgtgccccgcttctactggaaggaccggctgctgaagatgaagatggctgggctgaacgccatccagacgtatgtgccctggaactttcatgagccctggccaggacagtaccagttttctgaggaccatgatgtggaatattttcttcggctggctcatgagctgggactgctggttatcctgaggcccgggccctacatctgtgcagagtgggaaatgggaggattacctgcttggctgctagagaaagagtctattcttctccgctcctccgacccagattacctggcagctgtggacaagtggttgggagtccttctgcccaagatgaagcctctcctctatcagaatggagggccagttataacagtgcaggttgaaaatgaatatggcagctactttgcctgtgattttgactacctgcgcttcctgcagaagcgctttcgccaccatctgggggatgatgtggttctgtttaccactgatggagcacataaaacattcctgaaatgtggggccctgcagggcctctacaccacggtggactttggaacaggcagcaacatcacagatgctttcctaagccagaggaagtgtgagcccaaaggacccttgatcaattctgaattctatactggctggctagatcactggggccaacctcactccacaatcaagaccgaagcagtggcttcctccctctatgatatacttgcccgtggggcgagtgtgaacttgtacatgtttataggtgggaccaattttgcctattggaatggggccaactcaccctatgcagcacagcccaccagctacgactatgatgccccactgagtgaggctggggacctcactgagaagtattttgctctgcgaaacatcatccagaagtttgaaaaagtaccagaaggtcctatccctccatctacaccaaagtttgcatatggaaaggtcactttggaaaagttaaagacagtgggagcagctctggacattctgtgtccctctgggcccatcaaaagcctttatcccttgacatttatccaggtgaaacagcattatgggtttgtgctgtaccggacaacacttcctcaagattgcagcaacccagcacctctctcttcacccctcaatggagtccacgatcgagcatatgttgctgtggatgggatcccccagggagtccttgagcgaaacaatgtgatcactctgaacataacagggaaagctggagccactctggaccttctggtagagaacatgggacgtgtgaactatggtgcatatatcaacgattttaagggtttggtttctaacctgactctcagttccaatatcctcacggactggacgatctttccactggacactgaggatgcagtgtgcagccacctggggggctggggacaccgtgacagtggccaccatgatgaagcctgggcccacaactcatccaactacacgctcccggccttttatatggggaacttctccattcccagtgggatcccagacttgccccaggacacctttatccagtttcctggatggaccaagGTCACCCTGCTGATTGCCTTCATCTGTGTGCGGAGCTCCCTGTGGACCAACTACAGCGCCTACAGCTACTTTGAAGTGGTCACCATTTGCGACTTGATAATGATCCTCGCCTTTTACCTGGTCCACCTCTTCCGCTTCTACCGCGTGCTCACCTGTATCAGCTGGCCCCTGTCGATGCAGCCGTCTGATGAGGCCACAACCCCTAGGCCCCTCAGGAGCTTTGCAGAGAGGAGGACGTGTACTCCAGGCGAGGCCTCTGGACCTGTGTTCCTGTGCCAAAGTCCTGTCAGGCTGGTGGGCACCAGGAAAGGCCTGCACCCTCTTCCTGCTCTCCCAGGAAGCCAGCTCCCTGAGCTCCTGAGCCAGCCGGAAACTCTTCCTCCAGCCTTCCGGGGAGAACATCCCTCCCATTCTGGGAAAGGAAAGCAGCCTCCAGGGAAATGTTTTCTGCCTTCCTGCTTCTAG MPGFLVRILPLLLVLLLLGPTRGLRNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVCSHLGGWGHRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSMQPSDEATTPRPLRSFAERRTCTPGEASGPVFLCQSPVRLVGTRKGLHPLPALPGSQLPELLSQPETLPPAFRGEHPSHSGKGKQPPGKCFLPSCF* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33700 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2521 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39777767:- chr17:37913971-38020565:- chr17:37934020:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Motile_Sperm-PARTIAL|8-58~|6.6e-37 zf-TFIIB|252-282|0.00013^Desulfoferrod_N|265-275|0.00031^zf-H2C2_2|268-279|0.024^zf-C2H2_4|270-289|0.0013^zf-C2H2|270-289|0.019^Rubredoxin_2|270-278|0.017^zf-H2C2_2|288-306|7.3e-05^zf-C2H2_4|298-318|0.0006^zf-C2H2|298-319|7.2e-05^Rubredoxin_2|298-311|0.00029^Desulfoferrod_N|298-304|0.085^zf-TFIIB|299-304|2.6 ["IKZF3:Oncogene"];["Klijn_CellLines","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr17] 48 29 48 19.82 ONLY_REF_SPLICE YES_LDAS 0.8472 GT 1.9656 AG 1.7819 ENST00000475243.6 1-58 ENST00000394189.6 164-984 chr20|+|[0]58389460-58389517[0]<==>chr17|-|[2]39765790-39766493[1]|[0]39777651-39777767[1] atggcgaaggtggagcaggtcctgagcctcgagccgcagcacgagctcaaattccgagCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTGGTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCATGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAAAAGAAAAGCATCCACCTTCCAGAGAAGAGCGTGCCTTCTGAGAGAGGCCTCTCTCCCAACAATAGTGGCCACGACTCCACGGACACTGACAGCAACCATGAAGAACGCCAGAATCACATCTATCAGCAAAATCACATGGTCCTGTCTCGGGCCCGCAATGGGATGCCACTTCTGAAGGAGGTTCCCCGCTCTTACGAACTCCTCAAGCCCCCGCCCATCTGCCCAAGAGACTCCGTCAAAGTGATCAACAAGGAAGGGGAGGTGATGGATGTGTATCGGTGTGACCACTGCCGCGTCCTCTTCCTGGACTATGTGATGTTCACGATTCACATGGGCTGCCACGGCTTCCGTGACCCTTTCGAGTGTAACATGTGTGGATATCGAAGCCATGATCGGTATGAGTTCTCGTCTCACATAGCCAGAGGAGAACACAGAGCCCTGCTGAAGTGA MAKVEQVLSLEPQHELKFRASAEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMSNGAPQELEKKSIHLPEKSVPSERGLSPNNSGHDSTDTDSNHEERQNHIYQQNHMVLSRARNGMPLLKEVPRSYELLKPPPICPRDSVKVINKEGEVMDVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRALLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 33701 EEIG1::CIZ1 ENSG00000167106.12::ENSG00000148337.22 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE FALSE TRUE 2524 TRUE 4605 FALSE NA EEIG1 ENSG00000167106.12 protein_coding - - chr9:127940582-127980989:- chr9:127979992:- chr9:130702861-130743268:- chr9:130742271:- CIZ1 ENSG00000148337.22 protein_coding - - chr9:128161251-128204383:- chr9:128185776:- chr9:130923530-130966662:- chr9:130948055:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame NT-C2-PARTIAL|6-146~|1.8e-36 zf-C2H2_jaz|622-647|1e-05^zf-C2H2_2|622-650|3.9e-05^zf-met|623-642|2.9e-05^zf-C2H2_4|623-642|0.00017^zf-C2H2|623-643|0.0011^zf-met|685-693|0.28^zf-C2H2_4|686-703|3.7^zf-C2H2|694-706|0.59^zf-C2H2_jaz|697-707|0.93^zf-C2H2_2|731-779|8.5e-06^zf-C2H2_jaz|742-766|1.4e-10^zf-met|742-763|0.00061^zf-C2H2_4|743-762|8.2e-05^zf-C2H2|743-765|0.00045^zf-C2H2_jaz|855-880|0.31^zf-C2H2_2|855-884|0.07^zf-met|855-863|0.1^zf-C2H2_4|855-876|0.035^zf-C2H2|855-868|0.022 none 35 18 35 14.65 ONLY_REF_SPLICE YES_LDAS 0.6202 GT 1.9899 AG 1.9656 ENST00000373095.6 1-146 ENST00000538431.5 449-2865 chr9|-|[1]127979992-127980137[0]<==>chr9|-|[2]128166197-128166406[0]|[2]128166759-128166880[1]|[0]128167095-128167164[0]|[2]128169052-128169201[0]|[2]128169406-128169519[0]|[2]128169623-128169700[0]|[2]128170020-128170107[2]|[1]128176351-128176475[0]|[2]128177566-128177763[0]|[2]128178369-128178490[1]|[0]128178709-128179415[2]|[1]128180415-128180523[1]|[0]128180721-128180814[0]|[2]128185547-128185776[1] atggctttcttgatgaagaagaagaaattcaaattccaaactactttcaccctggaggagctgactgcggttcccttcgtgaacggggtcctcttctgcaaggtccggctgctggatggaggggattttgtcagcttgtcgtcaagGTAACCTCCGAGGCTATGGCATGGCATCCCCAGGCCTCGCAGCCCCCAGCCTCACACCCCCACAACTGGCCACTCCAAATTTGCAACAGTTCTTTCCCCAGGCCACTCGCCAGTCCTTGCTGGGACCTCCTCCTGTTGGGGTCCCCATGAACCCTTCCCAGTTCAACCTTTCAGGACGGAACCCCCAGAAACAGGCCCGGACCTCCTCCTCTACCACCCCCAATCGAAAGGATTCTTCTTCTCAGACAATGCCTGTGGAAGACAAGTCAGACCCCCCAGAGGGGTCTGAGGAAGCCGCAGAGCCCCGGATGGACACACCAGAAGACCAAGATTTACCGCCCTGCCCAGAGGACATCGCCAAGGAAAAACGCACTCCAGCACCTGAGCCTGAGCCTTGTGAGGCGTCCGAGCTGCCAGCAAAGAGATTGAGGAGCTCAGAAGAGCCCACAGAGAAGGAACCTCCAGGGCAGTTACAGGTGAAGGCCCAGCCGCAGGCCCGGATGACAGTACCGAAACAGACACAGACACCAGACCTGCTGCCTGAGGCCCTGGAAGCCCAAGTGCTGCCACGATTCCAGCCACGGGTCCTGCAGGTCCAGGCCCAGGTGCAGTCACAGACTCAGCCGCGGATACCATCCACAGACACCCAGGTGCAGCCAAAGCTGCAGAAGCAGGCGCAAACACAGACCTCTCCAGAGCACTTAGTGCTGCAACAGAAGCAGGTGCAGCCACAGCTGCAGCAGGAGGCAGAGCCACAGAAGCAGGTGCAGCCACAGGTACAGCCACAGGCACATTCACAGGGCCCAAGGCAGGTGCAGCTGCAGCAGGAGGCAGAGCCGCTGAAGCAGGTGCAGCCACAGGTGCAGCCCCAGGCACATTCACAGCCCCCAAGGCAGGTGCAGCTGCAGCTGCAGAAGCAGGTCCAGACACAGACATATCCACAGGTCCACACACAGGCACAGCCAAGCGTCCAGCCACAGGAGCATCCTCCAGCGCAGGTGTCAGTACAGCCACCAGAGCAGACCCATGAGCAGCCTCACACCCAGCCGCAGGTGTCGTTGCTGGCTCCAGAGCAAACACCAGTTGTGGTTCATGTCTGCGGGCTGGAGATGCCACCTGATGCAGTAGAAGCTGGTGGAGGCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGGGTATGGGGCGCCGGGGGCTCCCTGAAGGTCACCATTCTGCAGAGCAGTGACAGCCGGGCCTTTAGCACTGTACCCCTGACACCTGTCCCCCGCCCCAGTGACTCCGTCTCCTCCACCCCTGCGGCTACCAGCACTCCCTCTAAGCAGGCCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCTCCAGCCAGCAGGAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGAGGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAGCCACCCACACCACGAAGAGATGTGTTTGCCCACGTTCCAGTGCAGGGGTGGAGCACAGCCCGGCTTGTTACAGATATGATTGCCAAACAATCCTTGCGACCCTTCTGCACCGTTTGCAACCGCTACTTCAAAACCCCTCGCAAGTTTGTGGAGCACGTGAAGTCCCAGGGGCATAAGGACAAAGCCAAGGAGCTGAAGTCGCTTGAGAAAGAAATTGCTGGCCAAGATGAGGACCACTTCATTACAGTGGACGCTGTGGGTTGCTTCGAGGGTGATGAAGAAGAGGAAGAGGATGATGAGGATGAAGAAGAGATCGAGGTTGAGGAGGAACTCTGCAAGCAGGTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATGGTGTGGACTTCCTGGTGCCCGTGATGGGCTATATCTGCCGCATCTGCCACAAGTTCTATCACAGCAACTCAGGGGCACAGCTCTCCCACTGCAAGTCCCTGGGCCACTTTGAGAACCTGCAGAAATACAAGGCGGCCAAGAACCCCAGCCCCACCACCCGACCTGTGAGCCGCCGGTGCGCAATCAACGCCCGGAACGCTTTGACAGCCCTGTTCACCTCCAGCGGCCGCCCACCCTCCCAGCCCAACACCCAGGACAAAACACCCAGCAAGGTGACGGCTCGACCCTCCCAGCCCCCACTACCTCGGCGCTCAACCCGCCTCAAAACCTGA MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSR*PPRLWHGIPRPRSPQPHTPTTGHSKFATVLSPGHSPVLAGTSSCWGPHEPFPVQPFRTEPPETGPDLLLYHPQSKGFFFSDNACGRQVRPPRGV*GSRRAPDGHTRRPRFTALPRGHRQGKTHSST*A*AL*GVRAASKEIEELRRAHREGTSRAVTGEGPAAGPDDSTETDTDTRPAA*GPGSPSAATIPATGPAGPGPGAVTDSAADTIHRHPGAAKAAEAGANTDLSRALSAATEAGAATAAAGGRATEAGAATGTATGTFTGPKAGAAAAGGRAAEAGAATGAAPGTFTAPKAGAAAAAEAGPDTDISTGPHTGTAKRPATGASSSAGVSTATRADP*AASHPAAGVVAGSRANTSCGSCLRAGDAT*CSRSWWRHGKDLARACGHPSQHGRDSE*VGLWPRCGRM*KQSERDARGMGRRGLPEGHHSAEQ*QPGL*HCTPDTCPPPQ*LRLLHPCGYQHSL*AGPPVLLLHLQGQLLQPAGVPGPHVGASAPAAARGDPAHEPSLPPVPAARAPGRPGDRG*GASTKALVQHLPALLHGGPDPTPQDTGPQATHTTKRCVCPRSSAGVEHSPACYRYDCQTILATLLHRLQPLLQNPSQVCGAREVPGA*GQSQGAEVA*ERNCWPR*GPLHYSGRCGLLRG**RRGRG**G*RRDRG*GGTLQAGEVQRYIQRGVEGLGDLQPQYCIWCGLPGARDGLYLPHLPQVLSQQLRGTALPLQVPGPL*EPAEIQGGQEPQPHHPTCEPPVRNQRPERFDSPVHLQRPPTLPAQHPGQNTQQGDGSTLPAPTTSALNPPQNL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33702 ZMYND8::CEP250 ENSG00000101040.20::ENSG00000126001.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2508 TRUE 4596 TRUE 1741 ZMYND8 ENSG00000101040.20 protein_coding - - chr20:47209214-47356889:- chr20:47224317:- chr20:45837859-45985633:- chr20:45852970:- CEP250 ENSG00000126001.17 protein_coding + + chr20:35455164-35519280:+ chr20:35491212:+ chr20:34042985-34107108:+ chr20:34079038:+ chr20:47221457,chr20:47221457,chr20:47221459,chr20:47221465,chr20:47221459 chr20:35482205,chr20:35482210,chr20:35482203,chr20:35482203,chr20:35482205 NA NA chr20:45850108,chr20:45850108,chr20:45850110,chr20:45850116,chr20:45850110 chr20:34070030,chr20:34070035,chr20:34070028,chr20:34070028,chr20:34070030 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF3544|40-80|0.52^PHD|118-157|1.5e-09^zf-MYND|118-137|5.1^Bromodomain|190-266|9.8e-20^LptF_LptG|243-260|0.56^zf-MYND|281-292|7^PHD|291-301|2^PWWP|307-375|3.6e-10^MUM1-like_PWWP|307-332|5.1e-05^DUF3544|449-646|4.4e-97^DUF3544|679-693|3.2^DUF3544|774-870|7^LptF_LptG|840-911|0.0014^PWWP|846-898|0.43^PWWP|998-1022|6.4^PHD|1055-1067|7^zf-MYND|1055-1089|6.8e-08^DUF3544|1095-1151|1.9^DUF3544|1200-1218|7 none ["ZMYND8:Oncogene"];["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:11.69Mb] 34 101 34 7.24 ONLY_REF_SPLICE YES_LDAS 0.5151 GT 1.8295 AG 1.8892 ENST00000536340.5 1-3277 ENST00000397527.6 2755-7329 chr20|-|[0]47224317-47224556[1]|[0]47227203-47227281[0]|[2]47229726-47229806[0]|[2]47236326-47236516[1]|[0]47238758-47239138[1]|[0]47246008-47246517[1]|[0]47249287-47249439[1]|[0]47262288-47262428[1]|[0]47276314-47276795[2]|[1]47282102-47282217[0]|[2]47283571-47283648[0]|[2]47287229-47287284[1]|[0]47290187-47290274[0]|[2]47291796-47291888[0]|[2]47294666-47294779[0]|[2]47298729-47298947[0]|[2]47310056-47310204[1]|[0]47347856-47347926[2]|[1]47356380-47356414[0]<==>chr20|+|[0]35491212-35491346[2]|[0]35493429-35493572[2]|[0]35494524-35494657[1]|[2]35496577-35496715[2]|[0]35497719-35498067[0]|[1]35498595-35498716[2]|[0]35500049-35500169[0]|[1]35501845-35501966[2]|[0]35502390-35505005[2]|[0]35507738-35507851[2]|[0]35508035-35508190[2]|[0]35508943-35509044[2]|[0]35509998-35510054[2]|[0]35511363-35511626[2] atggtgtttctggaagagtttgaagctagatcctgcttggctgaagaggaaataaaaacagaacaggaggtggtagagggcatggatatctctactcgctccaaagatcctggctctgcagagagaacagcccagaaaagaaagttccccagccctccacattcttccaatggccactcgccgcaggacacatcaacaagccccattaaaaagaaaaagaaacctggcttactgaacagtaacaataaggagcagtcagaactaagacatggtccgttttactatatgaagcagccactcaccacagaccctgttgatgttgtaccgcaggatggacggaatgatttctactgctgggtttgtcaccgggaaggccaagtcctttgctgtgagctctgtccccgggtttatcacgctaagtgtctgagactgacatcggaaccagagggggactggttttgtcctgaatgtgagaaaattacagtagcagaatgcatcgagacccagagtaaagccatgacaatgctcaccattgaacagttatcctacctgctcaagtttgccattcagaaaatgaaacagccagggacagatgcattccagaagcccgttccattggaacagcaccctgactatgcggaatacatcttccatccaatggacctttgtacattggaaaagaatgcgaaaaagaaaatgtatggctgcacagaagccttcctggctgatgcaaagtggattttgcacaactgcatcatttataatgggggaaatcacaaattgacgcaaatagcgaaagtagtcatcaaaatctgtgaacatgagatgaatgaaatcgaagtatgtccagaatgttatctagctgcttgccaaaaacgagataactggttttgtgagccttgtagcaatccacatcctttggtctgggccaaactgaaggggtttccattctggcctgcaaaagctctaagggataaagacgggcaggtcgatgcccgattctttggacaacatgacagggcctgggttccaataaataattgctacctcatgtctaaagaaattcctttttctgtgaaaaagactaagagcatcttcaacagtgccatgcaagagatggaggtttacgtggagaacatccgcaggaagtttggggtttttaattactctccatttaggacaccctacacacccaacagccagtatcaaatgctgctcgatcccaccaaccccagcgccggcactgccaagatagacaagcaggagaaggtcaagctcaactttgacatgacggcatcccccaagatcctgatgagcaagcctgtgctgagtgggggcacaggccgccggatttccttgtcggatatgccgcgctcccccatgagcacaaactcttctgtgcacacgggctccgacgtggagcaggatgctgagaagaaggccacgtcgagccacttcagtgcgagcgaggagtccatggacttcctggataagagcacagcttcaccagcctccaccaagacgggacaagcagggagtttatccggcagcccaaagcccttctctcctcaactgtcagctcctatcacgacgaaaacggacaaaacctccaccaccggcagcatcctgaatcttaacctggatcgaagcaaagctgagatggatttgaaggagctgagcgagtcggtccagcaacagtccacccctgttcctctcatctctcccaagcgccagattcgtagcaggttccagctgaatcttgacaagaccatagagagttgcaaagcacaattaggcataaatgaaatctcggaagatgtctatacggccgtagagcacagcgattcggaggattctgagaagtcagatagtagcgatagtgagtatatcagtgatgatgagcagaagtctaagaacgagccagaagacacagaggacaaagaaggttgtcagatggacaaagagccatctgctgttaaaaaaaagcccaagcctacaaacccagtggagattaaagaggagctgaaaagcacgtcaccagccagcgagaaggcagaccctggagcagtcaaggacaaggccagccctgagcctgagaaggacttttccgaaaaggcaaaaccttcacctcaccccataaaggataaactgaagggaaaagatgagacggattccccaacagtccatttgggcctggactctgattcagagagcgaacttgtcatagatttaggagaagaccattctgggcgggagggtcgaaaaaataagaaggaacccaaagaaccatctcccaaacaggatgttgtaggtaaaactccaccatccacgacggtgggcagccattctcccccggaaacaccggtgctcacccgctcttccgcccaaacttccgcggctggcgccacagccaccaccagcacgtcctccacggtcaccgtcacggccccggcccccgccgccacaggaagcccagtgaaaaagcagaggccgcttttaccgaaggagactgccccggccgtgcagcgggtcgtgtggaactcatcaagtaagtttcaaacgtcctcccaaaagtggcacatgcagaagatgcagcgtcagcagcagcagcagcagcagcaaaaccagcagcagcagcctcagtcttcccaggggacgagatatcagaccagacaggctgtgaaagctgtccagcagaaggagatcacacagagcccatccacgtccaccatcaccctggtgaccagcacacagtcatcgcccctggtcaccagctcggggtccatgagcacccttgtgtcctcagtcaacgctgacctgcccatcgccactgcctcagctgatgtcgccgctgatattgccaagtacactagcaaaatgatggatgcaataaaaggaacaatgacagaaatatacaacgatctttctaaaaacactactggaagcacaatagctgagattcgcaggctgaggatcgagatagagaagctccagtggctgcaccagcaagagctctccgaaatgaaacacaacttagagctgaccatggcggagatgcggcagagcctggagcaggagcgggaccggctcatcgccgaggtgaagaagcagctggagttggagaagcagcaggcggtggatgagaccaagaagaagcagtggtgcgccaactgcaagaaggaggccatcttttactgctgttggaacaccagctactgtgactacccctgccagcaagcccactggcctgagcacatgaagtcctgcacccagtcagATGCAGCTGGAAACAGAGAAGGAGAGAGTATCCCTCCTGGAGACACTGCTGCAGACGCAGAAGGAGCTAGCAGATGCCAGCCAACAACTGGAACGACTGAGGCAGGACATGAAAGTCCAGAAATTAAAGGAGCAGGAGACCACTGGGATACTACAGACCCAGCTCCAGGAGGCTCAACGGGAGCTGAAGGAGGCAGCCCGGCAGCACAGAGATGACCTTGCTGCCCTCCAAGAAGAGAGCAGCTCCCTGCTGCAGGATAAGATGGACCTGCAGAAGCAGGTGGAGGACTTGAAGTCTCAGCTGGTGGCCCAGGATGACTCCCAGAGGCTGGTGGAGCAGGAGGTTCAGGAGAAGCTGAGAGAGACCCAGGAGTATAACCGAATTCAGAAGGAGCTGGAGAGAGAGAAAGCCAGCCTGACTCTCTCACTGATGGAAAAGGAACAGAGACTCCTTGTTTTACAAGAAGCTGACTCTATTCGACAACAAGAGCTGAGTGCCCTGCGCCAGGACATGCAGGAGGCCCAGGGAGAACAGAAAGAGCTCAGTGCTCAGATGGAATTACTAAGGCAAGAGGTGAAGGAAAAGGAGGCTGACTTTCTGGCCCAGGAAGCACAGCTGCTGGAGGAGCTGGAGGCGTCTCATATCACGGAGCAGCAGCTGCGAGCCTCCTTGTGGGCCCAGGAAGCCAAGGCAGCCCAACTACAGCTGCGACTGCGCAGCACAGAGAGCCAGCTAGAAGCGCTGGCCGCAGAGCAGCAGCCCGGGAACCAGGCCCAGGCCCAGGCCCAGCTGGCCAGCCTCTACTCTGCCCTGCAGCAGGCCCTGGGGTCTGTTTGTGAGAGCAGGCCTGAGCTGAGTGGTGGGGGAGACTCTGCTCCTTCCGTCTGGGGCCTTGAGCCAGACCAGAATGGAGCTAGGAGCCTCTTTAAGAGAGGGCCCCTGCTGACTGCTCTCTCCGCTGAGGCAGTAGCATCTGCCCTCCACAAGCTTCATCAAGACCTGTGGAAGACTCAACAGACCCGGGATGTTCTGAGGGATCAGGTCCAGAAACTGGAAGAGCGTCTAACTGATACTGAGGCTGAGAAGAGCCAGGTCCACACAGAGTTGCAGGATCTGCAGAGACAGCTCTCCCAGAATCAGGAAGAGAAATCTAAGTGGGAAGGAAAGCAGAACTCCCTAGAATCTGAGCTGATGGAACTACATGAAACTATGGCATCCTTACAGAGTCGCCTGCGGAGAGCAGAGCTACAGCGAATGGAAGCCCAGGGTGAGCGAGAGTTACTTCAGGCAGCCAAGGAGAACCTGACAGCCCAGGTGGAACACCTGCAAGCAGCTGTCGTAGAAGCCAGGGCTCAGGCAAGTGCTGCTGGCATCCTGGAAGAAGACCTGAGAACGGCTCGCTCAGCACTGAAGCTGAAAAATGAGGAAGTAGAGAGTGAGCGTGAGAGAGCCCAGGCTCTGCAAGAGCAGGGCGAACTGAAGGTGGCCCAAGGGAAGGCTCTGCAAGAGAATTTGGCCCTCCTGACCCAGACCCTAGCTGAAAGAGAAGAGGAGGTGGAGACTCTGCGGGGACAAATCCAGGAACTGGAGAAGCAACGGGAAATGCAGAAGGCTGCTTTGGAATTGCTGTCTCTGGACCTGAAGAAGAGGAACCAAGAGGTAGATCTGCAGCAAGAACAGATTCAGGAGCTAGAGAAGTGTAGGTCTGTTTTAGAGCATCTGCCCATGGCCGTCCAGGAGCGAGAGCAGAAGCTGACTGTGCAGAGGGAGCAGATCAGAGAGCTCGAGAAGGATCGGGAGACTCAGAGGAACGTCTTGGAGCATCAGCTTCTAGAACTTGAGAAGAAAGACCAAATGATTGAGTCCCAGAGAGGACAGGTTCAGGACCTGAAAAAGCAGTTGGTTACTCTGGAATGCCTGGCCCTGGAACTGGAGGAAAACCATCACAAGATGGAGTGCCAGCAAAAACTGATCAAGGAGCTGGAGGGCCAGAGGGAAACCCAGAGAGTGGCTTTGACCCACCTTACGCTGGACCTAGAAGAAAGGAGCCAGGAGCTGCAGGCACAAAGCAGCCAGATCCATGACCTGGAGAGCCACAGCACCGTTCTGGCAAGAGAGCTGCAGGAGAGGGACCAGGAGGTGAAGTCTCAGCGAGAACAGATCGAGGAGCTGCAGAGGCAGAAAGAGCATCTGACTCAGGATCTCGAGAGGAGAGACCAGGAGCTGATGCTGCAGAAGGAGAGGATTCAGGTTCTCGAGGATCAGAGGACCCGGCAGACCAAGATCCTGGAGGAGGACCTGGAACAGATCAAGCTGTCCTTGAGAGAGCGAGGCCGGGAGCTGACCACTCAGAGGCAGCTGATGCAGGAACGGGCAGAGGAAGGGAAGGGCCCAAGTAAAGCACAGCGCGGGAGCCTAGAGCACATGAAGCTGATCCTGCGTGATAAGGAGAAGGAGGTGGAATGTCAGCAGGAGCATATCCATGAACTCCAGGAGCTCAAAGACCAGCTGGAGCAGCAGCTCCAGGGCCTGCACAGGAAGGTAGGTGAGACCAGCCTCCTCCTGTCCCAGCGAGAGCAGGAAATAGTGGTCCTGCAGCAGCAACTGCAGGAAGCCAGGGAACAAGGGGAGCTGAAGGAGCAGTCACTTCAGAGTCAACTGGATGAGGCCCAGAGAGCCCTAGCCCAGAGGGACCAGGAACTGGAGGCTCTGCAGCAAGAACAGCAGCAGGCCCAGGGACAGGAGGAGAGGGTGAAGGAAAAGGCAGACGCCCTCCAGGGAGCTCTGGAGCAAGCCCATATGACACTGAAGGAGCGTCATGGAGAGCTTCAGGACCACAAGGAACAGGCACGAAGGCTGGAGGAAGAGCTGGCAGTGGAGGGACGGCGGGTCCAGGCCCTGGAGGAGGTGCTGGGAGACCTAAGGGCTGAGTCTCGGGAACAGGAGAAAGCTCTGTTGGCCCTCCAGCAGCAGTGTGCTGAGCAGGCACAGGAGCATGAGGTGGAGACCAGGGCCCTGCAGGACAGCTGGCTGCAGGCCCAGGCAGTGCTCAAGGAACGGGACCAGGAGCTGGAAGCTCTGCGGGCAGAAAGTCAGTCCTCCCGGCATCAGGAGGAGGCTGCCCGGGCCCGGGCTGAGGCTCTGCAGGAGGCCCTTGGCAAGGCTCATGCTGCCCTGCAGGGGAAAGAGCAGCATCTCCTCGAGCAGGCAGAATTGAGCCGCAGTCTGGAGGCCAGCACTGCAACCCTGCAAGCCTCCCTGGATGCCTGCCAGGCACACAGTCGGCAGCTGGAGGAGGCTCTGAGGATACAAGAAGGTGAGATCCAGGACCAGGATCTCCGATACCAGGAGGATGTGCAGCAGCTGCAGCAGGCACTTGCCCAGAGGGATGAAGAGCTGAGACATCAGCAGGAACGGGAGCAGCTGCTGGAGAAGTCTCTGGCCCAGAGGGTCCAAGAGAATATGATCCAAGAGAAGCAGAATCTGGGGCAAGAGAGAGAAGAGGAGGAGATAAGGGGCCTTCATCAGAGTGTAAGGGAGCTACAGCTGACTCTAGCCCAAAAGGAACAGGAGATTCTGGAGCTGAGGGAGACCCAGCAAAGGAACAACCTGGAAGCCTTACCCCACAGCCACAAAACCTCCCCAATGGAGGAACAATCTCTAAAACTTGATTCTTTAGAGCCCAGGCTGCAGCGGGAGCTGGAGCGGCTACAGGCAGCCCTGAGACAGACAGAAGCCAGGGAGATTGAGTGGAGGGAGAAGGCCCAGGACTTGGCACTCTCCCTAGCGCAGACCAAGGCCAGTGTCAGCAGTCTGCAGGAGGTAGCCATGTTCCTACAAGCCTCTGTCCTGGAGCGGGACTCAGAACAGCAAAGGCTGCAGGATGAACTGGAGCTCACCAGACGGGCTCTGGAGAAGGAGCGGCTACACAGCCCAGGTGCAACCAGCACAGCAGAACTGGGGTCCAGAGGGGAGCAGGGTGTGCAGCTGGGAGAGGTCTCAGGAGTGGAGGCTGAGCCTAGTCCTGATGGAATGGAGAAGCAGTCATGGAGACAAAGGCTTGAACACCTGCAGCAAGCAGTGGCCCGGCTGGAGATTGACAGGAGCAGGCTGCAGCGCCACAATGTCCAGCTGCGGAGTACCTTGGAGCAGGTGGAGCGAGAACGGAGGAAGCTGAAGAGGGAGGCCATGCGTGCGGCCCAGGCAGGGTCCCTAGAGATCAGCAAGGCCACGGCTTCTTCACCCACACAGCAGGATGGGAGAGGACAGAAGAACTCAGATGCCAAGTGTGTGGCTGAACTGCAGAAAGAGGTGGTCCTGCTGCAAGCTCAGCTGACTTTGGAGCGGAAGCAGAAGCAGGACTACATCACCCGCTCAGCACAGACCAGCCGTGAGCTAGCAGGCCTGCACCACAGCCTCTCACACTCACTTCTTGCCGTGGCCCAGGCCCCTGAGGCCACTGTCCTGGAGGCAGAGACCCGCAGGCTGGATGAGTCCCTGACTCAAAGTCTGACATCCCCAGGGCCAGTCCTGCTACACCCCAGCCCCAGCACTACCCAAGCCGCCTCCAGGTAG MVFLEEFEARSCLAEEEIKTEQEVVEGMDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKPGLLNSNNKEQSELRHGPFYYMKQPLTTDPVDVVPQDGRNDFYCWVCHREGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAECIETQSKAMTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPVPLEQHPDYAEYIFHPMDLCTLEKNAKKKMYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLAACQKRDNWFCEPCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDRAWVPINNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNSQYQMLLDPTNPSAGTAKIDKQEKVKLNFDMTASPKILMSKPVLSGGTGRRISLSDMPRSPMSTNSSVHTGSDVEQDAEKKATSSHFSASEESMDFLDKSTASPASTKTGQAGSLSGSPKPFSPQLSAPITTKTDKTSTTGSILNLNLDRSKAEMDLKELSESVQQQSTPVPLISPKRQIRSRFQLNLDKTIESCKAQLGINEISEDVYTAVEHSDSEDSEKSDSSDSEYISDDEQKSKNEPEDTEDKEGCQMDKEPSAVKKKPKPTNPVEIKEELKSTSPASEKADPGAVKDKASPEPEKDFSEKAKPSPHPIKDKLKGKDETDSPTVHLGLDSDSESELVIDLGEDHSGREGRKNKKEPKEPSPKQDVVGKTPPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAPAPAATGSPVKKQRPLLPKETAPAVQRVVWNSSSKFQTSSQKWHMQKMQRQQQQQQQQNQQQQPQSSQGTRYQTRQAVKAVQQKEITQSPSTSTITLVTSTQSSPLVTSSGSMSTLVSSVNADLPIATASADVAADIAKYTSKMMDAIKGTMTEIYNDLSKNTTGSTIAEIRRLRIEIEKLQWLHQQELSEMKHNLELTMAEMRQSLEQERDRLIAEVKKQLELEKQQAVDETKKKQWCANCKKEAIFYCCWNTSYCDYPCQQAHWPEHMKSCTQSDAAGNREGESIPPGDTAADAEGASRCQPTTGTTEAGHESPEIKGAGDHWDTTDPAPGGSTGAEGGSPAAQR*PCCPPRREQLPAAG*DGPAEAGGGLEVSAGGPG*LPEAGGAGGSGEAERDPGV*PNSEGAGERESQPDSLTDGKGTETPCFTRS*LYSTTRAECPAPGHAGGPGRTERAQCSDGITKARGEGKGG*LSGPGSTAAGGAGGVSYHGAAAASLLVGPGSQGSPTTAATAQHREPARSAGRRAAAREPGPGPGPAGQPLLCPAAGPGVCL*EQA*AEWWGRLCSFRLGP*ARPEWS*EPL*ERAPADCSLR*GSSICPPQASSRPVEDSTDPGCSEGSGPETGRASN*Y*G*EEPGPHRVAGSAETALPESGREI*VGRKAELPRI*ADGTT*NYGILTESPAESRATANGSPG*ARVTSGSQGEPDSPGGTPASSCRRSQGSGKCCWHPGRRPENGSLSTEAEK*GSRE*A*ESPGSARAGRTEGGPREGSAREFGPPDPDPS*KRRGGGDSAGTNPGTGEATGNAEGCFGIAVSGPEEEEPRGRSAARTDSGAREV*VCFRASAHGRPGARAEADCAEGADQRAREGSGDSEERLGASASRT*EERPND*VPERTGSGPEKAVGYSGMPGPGTGGKPSQDGVPAKTDQGAGGPEGNPESGFDPPYAGPRRKEPGAAGTKQPDP*PGEPQHRSGKRAAGEGPGGEVSARTDRGAAEAERASDSGSREERPGADAAEGEDSGSRGSEDPADQDPGGGPGTDQAVLERARPGADHSEAADAGTGRGREGPK*STAREPRAHEADPA**GEGGGMSAGAYP*TPGAQRPAGAAAPGPAQEGR*DQPPPVPARAGNSGPAAATAGSQGTRGAEGAVTSESTG*GPESPSPEGPGTGGSAARTAAGPGTGGEGEGKGRRPPGSSGASPYDTEGASWRASGPQGTGTKAGGRAGSGGTAGPGPGGGAGRPKG*VSGTGESSVGPPAAVC*AGTGA*GGDQGPAGQLAAGPGSAQGTGPGAGSSAGRKSVLPASGGGCPGPG*GSAGGPWQGSCCPAGERAASPRAGRIEPQSGGQHCNPASLPGCLPGTQSAAGGGSEDTRR*DPGPGSPIPGGCAAAAAGTCPEG*RAETSAGTGAAAGEVSGPEGPREYDPREAESGARERRGGDKGPSSECKGATADSSPKGTGDSGAEGDPAKEQPGSLTPQPQNLPNGGTISKT*FFRAQAAAGAGAATGSPETDRSQGD*VEGEGPGLGTLPSADQGQCQQSAGGSHVPTSLCPGAGLRTAKAAG*TGAHQTGSGEGAATQPRCNQHSRTGVQRGAGCAAGRGLRSGG*A*S*WNGEAVMETKA*TPAASSGPAGD*QEQAAAPQCPAAEYLGAGGARTEEAEEGGHACGPGRVPRDQQGHGFFTHTAGWERTEELRCQVCG*TAERGGPAASSADFGAEAEAGLHHPLSTDQP*ASRPAPQPLTLTSCRGPGP*GHCPGGRDPQAG*VPDSKSDIPRASPATPQPQHYPSRLQV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33704 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2522 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39766493:- chr17:37913971-38020565:- chr17:37922746:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Motile_Sperm-PARTIAL|8-58~|6.6e-37 zf-C2H2_4-PARTIAL|~281-289|0.0013^zf-C2H2-PARTIAL|~281-289|0.019^zf-TFIIB-PARTIAL|~281-282|0.00013^zf-H2C2_2|288-306|7.3e-05^zf-C2H2_4|298-318|0.0006^zf-C2H2|298-319|7.2e-05^Rubredoxin_2|298-311|0.00029^Desulfoferrod_N|298-304|0.085^zf-TFIIB|299-304|2.6 ["IKZF3:Oncogene"];["Klijn_CellLines","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr17] 29 15 29 4.22 ONLY_REF_SPLICE YES_LDAS 0.415 GT 1.9656 AG 1.9329 ENST00000475243.6 1-58 ENST00000394189.6 281-984 chr20|+|[0]58389460-58389517[0]<==>chr17|-|[2]39765790-39766493[1] atggcgaaggtggagcaggtcctgagcctcgagccgcagcacgagctcaaattccgagGTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCATGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAAAAGAAAAGCATCCACCTTCCAGAGAAGAGCGTGCCTTCTGAGAGAGGCCTCTCTCCCAACAATAGTGGCCACGACTCCACGGACACTGACAGCAACCATGAAGAACGCCAGAATCACATCTATCAGCAAAATCACATGGTCCTGTCTCGGGCCCGCAATGGGATGCCACTTCTGAAGGAGGTTCCCCGCTCTTACGAACTCCTCAAGCCCCCGCCCATCTGCCCAAGAGACTCCGTCAAAGTGATCAACAAGGAAGGGGAGGTGATGGATGTGTATCGGTGTGACCACTGCCGCGTCCTCTTCCTGGACTATGTGATGTTCACGATTCACATGGGCTGCCACGGCTTCCGTGACCCTTTCGAGTGTAACATGTGTGGATATCGAAGCCATGATCGGTATGAGTTCTCGTCTCACATAGCCAGAGGAGAACACAGAGCCCTGCTGAAGTGA MAKVEQVLSLEPQHELKFRGEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMSNGAPQELEKKSIHLPEKSVPSERGLSPNNSGHDSTDTDSNHEERQNHIYQQNHMVLSRARNGMPLLKEVPRSYELLKPPPICPRDSVKVINKEGEVMDVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRALLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 33705 ASTN2::ENSG00000231901 ENSG00000148219.18::ENSG00000231901.1 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA ASTN2 ENSG00000148219.18 protein_coding - - chr9:116423112-117415070:- chr9:117291326:- chr9:119185391-120177348:- chr9:120053605:- ENSG00000231901 ENSG00000231901.1 lncRNA - - chr9:117840322-117897256:- chr9:117870227:- chr9:120602600-120659534:- chr9:120632505:- chr9:117285838,chr9:117285844 chr9:117881659,chr9:117881662 NA NA chr9:120048117,chr9:120048123 chr9:120643937,chr9:120643940 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ASTN2:Oncogene"] 28 18 28 18 ONLY_REF_SPLICE YES_LDAS 0.5747 GT 1.9219 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33707 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2528 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58732484:+ chr17:56769934-56812972:+ chr17:56809845:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PIP5K|127-414|1.8e-86 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:19.89Mb] 24 18 24 8 ONLY_REF_SPLICE YES_LDAS 0.3997 GT 1.7968 AG 1.9329 ENST00000619039.5 1-807 ENST00000697694.1 615-780 chr17|-|[2]38777687-38777800[0]|[2]38778334-38778372[0]|[2]38779383-38779529[0]|[2]38780452-38780604[0]|[2]38784243-38784339[2]|[1]38786823-38786920[0]|[2]38799266-38799424[0]<==>chr17|+|[2]58732484-58732544[2]|[0]58734118-58734222[2] atgtcgtccaactgcaccagcaccacggcggtggcggtggcgccgctcagcgccagcaagaccaagaccaagaagaagcatttcgtgtgccagaaagtgaagctattccgggccagcgagccgatcctcagcgtcctgatgtggggggtgaaccacacgatcaatgagctgagcaatgttcctgttcctgtcatgctaatgccagatgacttcaaagcctacagcaagatcaaggtggacaatcatctcttcaataaggagaacctgcccagccgctttaagtttaaggagtattgccccatggtgttccgaaaccttcgggagaggtttggaattgatgatcaggattaccagaattcagtgacgcgcagcgcccccatcaacagtgacagccagggtcggtgtggcacgcgtttcctcaccacctacgaccggcgctttgtcatcaagactgtgtccagcgaggacgtggcggagatgcacaacatcttaaagaaataccaccagtttatagtggagtgtcatggcaacacgcttttgccacagttcctgggcatgtaccgcctgaccgtggatggtgtggaaacctacatggtggttaccaggaacgtgttcagccatcggctcactgtgcatcgcaagtatgacctcaagggttctacggttgccagagaagcgagcgacaaggagaaggccaaggacttgccaacattcaaagacaatgacttcctcaatgaagggcagaagctgcatgtgggagaggagagtaaaaagaacttcctggagaaactgaagcgggacgttgagGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAA MSSNCTSTTAVAVAPLSASKTKTKKKHFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEVGNIVQVTQPEGMHSTVSNQTSGI*RYCCYFCMFIANRRFLEHPETVTRPRGRII FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 33709 MED13::BCAS3 ENSG00000108510.10::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2526 TRUE 4606 TRUE 1749 MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:62052537:- chr17:60019966-60142639:- chr17:60129898:- BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61388618:+ chr17:58754814-59470199:+ chr17:59465979:+ chr17:62052111,chr17:62052114 chr17:61382953,chr17:61382950 NA NA chr17:60129472,chr17:60129475 chr17:59460314,chr17:59460311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none none ["BCAS3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.55Mb] 20 24 20 16.92 ONLY_REF_SPLICE YES_LDAS 0.4612 GT 1.5546 AG 0.8366 ENST00000397786.7 1-470 ENST00000589222.5 2660-2787 chr17|-|[1]62052537-62052705[1]|[0]62063067-62063301[0]|[2]62065140-62065205[0]<==>chr17|+|[1]61388618-61388708[1]|[2]61391977-61392013[2] atgagtgcctccttcgtgccgaacggggccagcctggaagattgtcactgtaacctcttctgcctggctgacttgacaggaattaagtggaaaaaatatgtatggcaaggcccaacttctgcccctattctgtttcctgtgacagaagaagaccccattttgagcagttttagtcgctgccttaaggcagatgtacttggtgtttggcggcgagatcaaagacctggaagaagagaattgtggatattttggtggggtgaagaccccagttttgctgaccttattcaccatgacttatcagaagaagaagatggagtgtgggagaatggactttcctatgaatgccgtactctgcttttcaaagcagttcacaatctattggaacggtgtttaatgaacaggaattttgtacgtattggcaagtggtttgtaaagccttatgaaaaagatgaaaaacctataaataaaagGGAAAAAAAAAGGAAAAAAAAAACAATGCCAACAGCCCAGCGTCCGTGAGCAACCCAACAGTAACAAAGCATGCGTTCGGGATGGAGGAAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAA MSASFVPNGASLEDCHCNLFCLADLTGIKWKKYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFWWGEDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKREKKRKKKTMPTAQRP*ATQQ*QSMRSGWRKNFSEREASRL*V FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33710 USP32::MED1 ENSG00000170832.13::ENSG00000125686.12 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2531 FALSE NA FALSE NA USP32 ENSG00000170832.13 protein_coding - - chr17:60177327-60422470:- chr17:60345481:- chr17:58254688-58499831:- chr17:58422842:- MED1 ENSG00000125686.12 protein_coding - - chr17:39404285-39451272:- chr17:39447904:- chr17:37560538-37607525:- chr17:37604157:- chr17:60334258,chr17:60334260 chr17:39448879,chr17:39448878 NA NA chr17:58411619,chr17:58411621 chr17:37605132,chr17:37605131 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame none Med1|60-426|1.7e-55^Med1|1498-1519|0.49 ["USP32:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:20.73Mb] 19 8 19 8 ONLY_REF_SPLICE YES_LDAS 0.3372 GT 1.9656 AG 1.7968 ENST00000588898.1 1-234 ENST00000300651.11 26-4746 chr17|-|[2]60345481-60345608[1]|[0]60422246-60422351[0]<==>chr17|-|[2]39407475-39410721[2]|[1]39415026-39415131[1]|[0]39415244-39415339[1]|[0]39419717-39419918[0]|[2]39423327-39423445[1]|[0]39423697-39423821[2]|[1]39424627-39424738[1]|[0]39427701-39427790[1]|[0]39431115-39431188[2]|[1]39431942-39432016[2]|[1]39434249-39434320[2]|[1]39439165-39439193[0]|[2]39440386-39440518[2]|[1]39440623-39440677[1]|[0]39443550-39443628[0]|[2]39447798-39447904[1] atgtgcggggtcgagcgaagactttggcagagcgcacagcaggccaggagaggctggcgccccttctcccaagaatactgtcagatgctgatcctgacaccacctgttacagatgtagagctaaaacgactgaaggatgctttcaagaggacctgtggactctcatattacatgggccagcactgcttcatccgggaagtgcttggggatggagtgcctccaaaggttgctgagAGTCAGAAAAGCTGAGTAAGATGAGTTCTCTCCTGGAACGGCTCCATGCAAAATTTAACCAAAATAGACCCTGGAGTGAAACCATTAAGCTTGTGCGTCAAGTCATGGAGAAGAGGGTTGTGATGAGTTCTGGAGGGCATCAACATTTGGTCAGCTGTTTGGAGACATTGCAGAAGGCTCTCAAAGTAACATCTTTACCAGCAATGACTGATCGTTTGGAGTCCATAGCAAGACAGAATGGACTGGGCTCTCATCTCAGTGCCAGTGGCACTGAATGTTACATCACGTCAGATATGTTCTATGTGGAAGTGCAGTTAGATCCTGCAGGACAGCTTTGTGATGTAAAAGTGGCTCACCATGGGGAGAATCCTGTGAGCTGTCCGGAGCTTGTACAGCAGCTAAGGGAAAAAAATTTTGATGAATTTTCTAAGCACCTTAAGGGCCTTGTTAATCTGTATAACCTTCCAGGGGACAACAAACTGAAGACTAAAATGTACTTGGCTCTCCAATCCTTAGAACAAGATCTTTCTAAAATGGCAATTATGTACTGGAAAGCAACTAATGCTGGTCCCTTGGATAAGATTCTTCATGGAAGTGTTGGCTATCTCACACCAAGGAGTGGGGGTCATTTAATGAACCTGAAGTACTATGTCTCTCCTTCTGACCTACTGGATGACAAGACTGCATCTCCCATCATTTTGCATGAGAATAATGTTTCTCGATCTTTGGGCATGAATGCATCAGTGACAATTGAAGGAACATCTGCTGTGTACAAACTCCCAATTGCACCATTAATTATGGGGTCACATCCAGTTGACAATAAATGGACCCCTTCCTTCTCCTCAATCACCAGTGCCAACAGTGTTGATCTTCCTGCCTGTTTCTTCTTGAAATTTCCCCAGCCAATCCCAGTATCTAGAGCATTTGTTCAGAAACTGCAGAACTGCACAGGAATTCCATTGTTTGAAACTCAACCAACTTATGCACCCCTGTATGAACTGATCACTCAGTTTGAGCTATCAAAGGACCCTGACCCCATACCTTTGAATCACAACATGAGATTTTATGCTGCTCTTCCTGGTCAGCAGCACTGCTATTTCCTCAACAAGGATGCTCCTCTTCCAGATGGCCGAAGTCTACAGGGAACCCTTGTTAGCAAAATCACCTTTCAGCACCCTGGCCGAGTTCCTCTTATCCTAAATCTGATCAGACACCAAGTGGCCTATAACACCCTCATTGGAAGCTGTGTCAAAAGAACTATTCTGAAAGAAGATTCTCCTGGGCTTCTCCAATTTGAAGTGTGTCCTCTCTCAGAGTCTCGTTTCAGCGTATCTTTTCAGCACCCTGTGAATGACTCCCTGGTGTGTGTGGTAATGGATGTGCAGGACTCAACACATGTGAGCTGTAAACTCTACAAAGGGCTGTCGGATGCACTGATCTGCACAGATGACTTCATTGCCAAAGTTGTTCAAAGATGTATGTCCATCCCTGTGACGATGAGGGCTATTCGGAGGAAAGCTGAAACCATTCAAGCCGACACCCCAGCACTGTCCCTCATTGCAGAGACAGTTGAAGACATGGTGAAAAAGAACCTGCCCCCGGCTAGCAGCCCAGGGTATGGCATGACCACAGGCAACAACCCAATGAGTGGTACCACTACACCAACCAACACCTTTCCGGGGGGTCCCATTACCACCTTGTTTAATATGAGCATGAGCATCAAAGATCGGCATGAGTCGGTGGGCCATGGGGAGGACTTCAGCAAGGTGTCTCAGAACCCAATTCTTACCAGTTTGTTGCAAATCACAGGGAACGGGGGGTCTACCATTGGCTCGAGTCCGACCCCTCCTCATCACACGCCGCCACCTGTCTCTTCGATGGCCGGCAACACCAAGAACCACCCGATGCTCATGAACCTTCTTAAAGATAATCCTGCCCAGGATTTCTCAACCCTTTATGGAAGCAGCCCTTTAGAAAGGCAGAACTCCTCTTCCGGCTCACCCCGCATGGAAATATGCTCGGGGAGCAACAAGACCAAGAAAAAGAAGTCATCAAGATTACCACCTGAGAAACCAAAGCACCAGACTGAAGATGACTTTCAGAGGGAGCTATTTTCAATGGATGTTGACTCACAGAACCCTATCTTTGATGTCAACATGACAGCTGACACGCTGGATACGCCACACATCACTCCAGCTCCAAGCCAGTGTAGCACTCCCCCAACAACTTACCCACAACCAGTACCTCACCCCCAACCCAGTATTCAAAGGATGGTCCGACTATCCAGTTCAGACAGCATTGGCCCAGATGTAACTGACATCCTTTCAGACATTGCAGAAGAAGCTTCTAAACTTCCCAGCACTAGTGATGATTGCCCAGCCATTGGCACCCCTCTTCGAGATTCTTCAAGCTCTGGGCATTCTCAGAGTACCCTGTTTGACTCTGATGTCTTTCAAACTAACAATAATGAAAATCCATACACTGATCCAGCTGATCTTATTGCAGATGCTGCTGGAAGCCCCAGTAGTGACTCTCCTACCAATCATTTTTTTCATGATGGAGTAGATTTCAATCCTGATTTATTGAACAGCCAGAGCCAAAGTGGTTTTGGAGAAGAATATTTTGATGAAAGCAGCCAAAGTGGGGATAATGATGATTTCAAAGGATTTGCATCTCAGGCACTAAATACTTTGGGGGTGCCAATGCTTGGAGGTGATAATGGGGAGACCAAGTTTAAGGGCAATAACCAAGCCGACACAGTTGATTTCAGTATTATTTCAGTAGCCGGCAAAGCTTTAGCTCCTGCAGATCTTATGGAGCATCACAGTGGTAGTCAGGGTCCTTTACTGACCACTGGGGACTTAGGGAAAGAAAAGACTCAAAAGAGGGTAAAGGAAGGCAATGGCACCAGTAATAGTACTCTCTCGGGGCCCGGATTAGACAGCAAACCAGGGAAGCGCAGTCGGACCCCTTCTAATGATGGGAAAAGCAAAGATAAGCCTCCAAAGCGGAAGAAGGCAGACACTGAGGGAAAGTCTCCATCTCATAGTTCTTCTAACAGACCTTTTACCCCACCTACCAGTACAGGTGGATCTAAATCGCCAGGCAGTGCAGGAAGATCTCAGACTCCCCCAGGTGTTGCCACACCACCCATTCCCAAAATCACTATTCAGATTCCTAAGGGAACAGTGATGGTGGGCAAGCCTTCCTCTCACAGTCAGTATACCAGCAGTGGTTCTGTGTCTTCCTCAGGCAGCAAAAGCCACCATAGCCATTCTTCCTCCTCTTCCTCATCTGCTTCCACCTCAGGGAAGATGAAAAGCAGTAAATCAGAAGGTTCATCAAGTTCCAAGTTAAGTAGCAGTATGTATTCTAGCCAGGGGTCTTCTGGATCTAGCCAGTCCAAAAATTCATCCCAGTCTGGGGGGAAGCCAGGCTCCTCTCCCATAACCAAGCATGGACTGAGCAGTGGCTCTAGCAGCACCAAGATGAAACCTCAAGGAAAGCCATCATCACTTATGAATCCTTCTTTAAGTAAACCAAACATATCCCCTTCTCATTCAAGGCCACCTGGAGGCTCTGACAAGCTTGCCTCTCCAATGAAGCCTGTTCCTGGAACTCCTCCATCCTCTAAAGCCAAGTCCCCTATCAGTTCAGGTTCTGGTGGTTCTCATATGTCTGGAACTAGTTCAAGCTCTGGCATGAAGTCATCTTCAGGGTTAGGATCCTCAGGCTCGTTGTCCCAGAAAACTCCCCCATCATCTAATTCCTGTACGGCATCTTCCTCCTCCTTTTCCTCAAGTGGCTCTTCCATGTCATCCTCTCAGAACCAGCATGGGAGTTCTAAAGGAAAATCTCCCAGCAGAAACAAGAAGCCGTCCTTGACAGCTGTCATAGATAAACTGAAGCATGGGGTTGTCACCAGTGGCCCTGGGGGTGAAGACCCACTGGACGGCCAGATGGGGGTGAGCACAAATTCTTCCAGCCATCCTATGTCCTCCAAACATAACATGTCAGGAGGAGAGTTTCAGGGCAAGCGTGAGAAAAGTGATAAAGACAAATCAAAGGTTTCCACCTCCGGGAGTTCAGTGGATTCTTCTAAGAAGACCTCAGAGTCAAAAAATGTGGGGAGCACAGGTGTGGCAAAAATTATCATCAGTAAGCATGATGGAGGCTCCCCTAGCATTAAAGCCAAAGTGACTTTGCAGAAACCTGGGGAAAGTAGTGGAGAAGGGCTTAGGCCTCAAATGGCTTCTTCTAAAAACTATGGCTCTCCACTCATCAGTGGTTCCACTCCAAAGCATGAGCGTGGCTCTCCCAGCCATAGTAAGTCACCAGCATATACCCCCCAGAATCTGGACAGTGAAAGTGAGTCAGGCTCCTCCATAGCAGAGAAATCTTATCAGAATAGTCCCAGCTCAGACGATGGTATCCGACCACTTCCAGAATACAGCACAGAGAAACATAAGAAGCACAAAAAGGAAAAGAAGAAAGTAAAAGACAAAGATAGGGACCGAGACCGGGACAAAGACCGAGACAAGAAAAAATCTCATAGCATCAAGCCAGAGAGTTGGTCCAAATCACCCATCTCTTCAGACCAGTCCTTGTCTATGACAAGTAACACAATCTTATCTGCAGACAGACCCTCAAGGCTCAGCCCAGACTTTATGATTGGGGAGGAAGATGATGATCTTATGGATGTGGCCCTGATTGGGAATTAG MCGVERRLWQSAQQARRGWRPFSQEYCQMLILTPPVTDVELKRLKDAFKRTCGLSYYMGQHCFIREVLGDGVPPKVAESQKS*VR*VLSWNGSMQNLTKIDPGVKPLSLCVKSWRRGL**VLEGINIWSAVWRHCRRLSK*HLYQQ*LIVWSP*QDRMDWALISVPVALNVTSRQICSMWKCS*ILQDSFVM*KWLTMGRIL*AVRSLYSS*GKKILMNFLSTLRALLICITFQGTTN*RLKCTWLSNP*NKIFLKWQLCTGKQLMLVPWIRFFMEVLAISHQGVGVI**T*STMSLLLTYWMTRLHLPSFCMRIMFLDLWA*MHQ*QLKEHLLCTNSQLHH*LWGHIQLTINGPLPSPQSPVPTVLIFLPVSS*NFPSQSQYLEHLFRNCRTAQEFHCLKLNQLMHPCMN*SLSLSYQRTLTPYL*ITT*DFMLLFLVSSTAISSTRMLLFQMAEVYREPLLAKSPFSTLAEFLLS*I*SDTKWPITPSLEAVSKELF*KKILLGFSNLKCVLSQSLVSAYLFSTL*MTPWCVW*WMCRTQHM*AVNSTKGCRMH*SAQMTSLPKLFKDVCPSL*R*GLFGGKLKPFKPTPQHCPSLQRQLKTW*KRTCPRLAAQGMA*PQATTQ*VVPLHQPTPFRGVPLPPCLI*A*ASKIGMSRWAMGRTSARCLRTQFLPVCCKSQGTGGLPLARVRPLLITRRHLSLRWPATPRTTRCS*TFLKIILPRISQPFMEAAL*KGRTPLPAHPAWKYARGATRPRKRSHQDYHLRNQSTRLKMTFRGSYFQWMLTHRTLSLMST*QLTRWIRHTSLQLQASVALPQQLTHNQYLTPNPVFKGWSDYPVQTALAQM*LTSFQTLQKKLLNFPALVMIAQPLAPLFEILQALGILRVPCLTLMSFKLTIMKIHTLIQLILLQMLLEAPVVTLLPIIFFMME*ISILIY*TARAKVVLEKNILMKAAKVGIMMISKDLHLRH*ILWGCQCLEVIMGRPSLRAITKPTQLISVLFQ*PAKL*LLQILWSITVVVRVLY*PLGT*GKKRLKRG*RKAMAPVIVLSRGPD*TANQGSAVGPLLMMGKAKISLQSGRRQTLRESLHLIVLLTDLLPHLPVQVDLNRQAVQEDLRLPQVLPHHPFPKSLFRFLREQ*WWASLPLTVSIPAVVLCLPQAAKATIAILPPLPHLLPPQGR*KAVNQKVHQVPS*VAVCILARGLLDLASPKIHPSLGGSQAPLP*PSMD*AVALAAPR*NLKESHHHL*ILL*VNQTYPLLIQGHLEALTSLPLQ*SLFLELLHPLKPSPLSVQVLVVLICLELVQALA*SHLQG*DPQARCPRKLPHHLIPVRHLPPPFPQVALPCHPLRTSMGVLKENLPAETRSRP*QLS*IN*SMGLSPVALGVKTHWTARWG*AQILPAILCPPNITCQEESFRASVRKVIKTNQRFPPPGVQWILLRRPQSQKMWGAQVWQKLSSVSMMEAPLALKPK*LCRNLGKVVEKGLGLKWLLLKTMALHSSVVPLQSMSVALPAIVSHQHIPPRIWTVKVSQAPP*QRNLIRIVPAQTMVSDHFQNTAQRNIRSTKRKRRK*KTKIGTETGTKTETRKNLIASSQRVGPNHPSLQTSPCL*QVTQSYLQTDPQGSAQTL*LGRKMMILWMWP*LGI FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33712 TRIM37::MYO19 ENSG00000108395.14::ENSG00000278259.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4604 TRUE 1747 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59084002:- chr17:57059999-57184282:- chr17:57161363:- MYO19 ENSG00000278259.5 protein_coding - - chr17:36495636-36543435:- chr17:36507924:- chr17:34851480-34899284:- chr17:34863763:- chr17:59082066,chr17:59081712,chr17:59082076 chr17:36508181,chr17:36508182,chr17:36508188 NA NA chr17:57159427,chr17:57159073,chr17:57159437 chr17:34864020,chr17:34864021,chr17:34864027 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame zf-B_box|13-40|0.71^zf-C3HC4_3|14-59|4.9e-08^zf-C3HC4_2|14-54|5.4e-06^zf-B_box|49-60|2.1^zf-B_box|90-132|1.1e-13^zf-C3HC4_3|102-118|3.1^zf-C3HC4_2|108-114|10^HlyD_2|132-229|8.3e-06^ANIS5_cation-bd|132-193|0.0002^BORCS6|133-189|0.0001^FUSC|141-234|0.0009^Baculo_PEP_C|147-225|0.00066^MRFAP1|149-200|7.4e-05^BORCS6|220-234|1.6^MATH-PARTIAL|284-369~|6.7e-10 none ["TRIM37:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:22.44Mb] 18 2 18 1.66 ONLY_REF_SPLICE YES_LDAS 0.2456 GT 1.7465 AG 1.7819 ENST00000262294.12 1-369 ENST00000614623.5 1232-2913 chr17|-|[2]59084002-59084089[2]|[1]59088291-59088407[2]|[1]59091300-59091340[0]|[2]59104293-59104394[0]|[2]59106441-59106461[0]<==>chr17|-|[2]36496251-36496406[0]|[2]36498266-36498559[0]|[2]36499075-36499160[1]|[0]36500830-36500959[0]|[2]36501069-36501235[1]|[0]36503097-36503200[2]|[1]36503950-36504020[0]|[2]36505297-36505404[0]|[2]36506456-36506608[0]|[2]36506963-36507139[0]|[2]36507399-36507512[0]|[2]36507803-36507924[1] atggatgaacagagcgtggagagcattgctgaggttttccgatgtttcatttgtatggagaaattgcgggatgcacgcctgtgtcctcattgctccaaactgtgttgtttcagctgtattaggcgctggctgacagagcagagagctcaatgtcctcattgccgtgctccactccagctacgagaactagtaaattgtcgttgggcagaagaagtaacacaacagcttgatactcttcaactctgcagtctcaccaaacatgaagaaaatgaaaaggacaaatgtgaaaatcaccatgaaaaacttagtgtattttgctggacttgtaagaagtgtatctgccatcagtgtgcactttggggaggaatgGCCTGCTGGATGTGTATGGATTTGAATCATTTCCTGACAACAGTCTGGAACAGTTGTGCATCAACTACGCCAATGAGAAGCTGCAGCAGCATTTTGTGGCTCACTACCTAAGGGCCCAGCAGGAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAGGAATGCCGCCTCAATCGACCCAGCAGCGCAGCCCAGCTCCAGACACGCATTGAGACTGCCCTGGCAGGCAGCCCCTGCCTGGGCCACAATAAGCTCAGCCGGGAGCCCAGCTTCATTGTGGTGCATTATGCGGGGCCTGTGCGGTACCACACAGCAGGCCTGGTGGAGAAGAACAAGGACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAGGCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAGGTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCGGGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTGAATGGTGTCCACACAGCGAGGAAGCCACGCTTGAACCTCTCATCCAGGACATTCTCCACACTCTGCCGGTCCTAACTCAGGCAGCAGCCATAACTGGTGACTCGGCTGAGGCCATGCCAGCCCCCATGCACTGTGGCAGGACCAAGGTGTTCATGACTGACTCTATGCTGGAGCTTCTGGAATGTGGGCGTGCCCGGGTGCTGGAGCAGTGTGCCCGCTGCATCCAGGGTGGCTGGAGGCGACACCGGCACCGAGAGCAGGAGCGGCAGTGGCGGGCCGTCATGCTCATCCAGGCAGCCATTCGTTCCTGGTTAACTCGGAAACACATCCAGAGGCTGCATGCAGCTGCCACAGTCATCAAGCGTGCATGGCAGAAGTGGAGAATCAGAATGGCCTGCCTTGCTGCTAAAGAGCTGGATGGTGTGGAAGAAAAACACTTCTCTCAAGCTCCCTGTTCCCTGAGCACCTCGCCGCTGCAGACCAGGCTCCTGGAGGCAATAATCCGCCTCTGGCCCCTGGGACTGGTCCTGGCCAATACGGCTATGGGTGTAGGCAGCTTTCAGAGGAAATTAGTGGTCTGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTACACTGTCCAGACAGCACAAGACCAGGCTGGTGTCACGTCCATCCGAGCGCTGCCTCAGGGATCGATAAAGTTTCACTGCAGAAAGTCTCCACTGCGGTATGCTGACATCTGCCCTGAACCTTCACCCTACAGCATTACAGGCTTTAATCAGATTCTGCTGGAAAGACACAGGCTGATCCACGTGACCTCTTCTGCCTTCACTGGGCTGGGGTGA MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMACWMCMDLNHFLTTVWNSCASTTPMRSCSSILWLTT*GPSRRNTQLRAWSGHSSTTRTTSPVWISLREAPSASAPS*MRNAASIDPAAQPSSRHALRLPWQAAPAWATISSAGSPASLWCIMRGLCGTTQQAWWRRTRTLSHLS*PGSCSNPRTPCSWGCFLLTPKRRPRRNPLARAGPLC*PWCPSSRPHWSSFCRSYTAPRPTTFAASSPTARARRRPFSKRRS*ASWRPVASWRPSISVLLASPSGSLTETL*NDTSY*EGFILAHPLAPTAHILPKGSLNGVHTARKPRLNLSSRTFSTLCRS*LRQQP*LVTRLRPCQPPCTVAGPRCS*LTLCWSFWNVGVPGCWSSVPAASRVAGGDTGTESRSGSGGPSCSSRQPFVPG*LGNTSRGCMQLPQSSSVHGRSGESEWPALLLKSWMVWKKNTSLKLPVP*APRRCRPGSWRQ*SASGPWDWSWPIRLWV*AAFRGN*WSGLASSSPGAAPVATLSRQHKTRLVSRPSERCLRDR*SFTAESLHCGMLTSALNLHPTALQALIRFCWKDTG*ST*PLLPSLGWG FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33714 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2529 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58724040:+ chr17:56769934-56812972:+ chr17:56801401:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PIP5K|127-414|1.8e-86 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:19.89Mb] 17 20 17 8.33 ONLY_REF_SPLICE YES_LDAS 0.3165 GT 1.7968 AG 1.6402 ENST00000619039.5 1-807 ENST00000697686.1 554-861 chr17|-|[2]38777687-38777800[0]|[2]38778334-38778372[0]|[2]38779383-38779529[0]|[2]38780452-38780604[0]|[2]38784243-38784339[2]|[1]38786823-38786920[0]|[2]38799266-38799424[0]<==>chr17|+|[1]58724040-58724100[1]|[2]58730186-58730307[0]|[1]58732484-58732544[1]|[2]58734118-58734181[2] atgtcgtccaactgcaccagcaccacggcggtggcggtggcgccgctcagcgccagcaagaccaagaccaagaagaagcatttcgtgtgccagaaagtgaagctattccgggccagcgagccgatcctcagcgtcctgatgtggggggtgaaccacacgatcaatgagctgagcaatgttcctgttcctgtcatgctaatgccagatgacttcaaagcctacagcaagatcaaggtggacaatcatctcttcaataaggagaacctgcccagccgctttaagtttaaggagtattgccccatggtgttccgaaaccttcgggagaggtttggaattgatgatcaggattaccagaattcagtgacgcgcagcgcccccatcaacagtgacagccagggtcggtgtggcacgcgtttcctcaccacctacgaccggcgctttgtcatcaagactgtgtccagcgaggacgtggcggagatgcacaacatcttaaagaaataccaccagtttatagtggagtgtcatggcaacacgcttttgccacagttcctgggcatgtaccgcctgaccgtggatggtgtggaaacctacatggtggttaccaggaacgtgttcagccatcggctcactgtgcatcgcaagtatgacctcaagggttctacggttgccagagaagcgagcgacaaggagaaggccaaggacttgccaacattcaaagacaatgacttcctcaatgaagggcagaagctgcatgtgggagaggagagtaaaaagaacttcctggagaaactgaagcgggacgttgagGGGAAAGTTGGGGACATGCTGCTACAATACGGCTAATCTTTCATTGGGACCGAAAGCAAAGATGGAGTCTCGCCCTGTCGCCCAGGCTGGAGTGCAGAGGCACGATCTCGGCTCACTGCAACCTCCACCTCCCCAGTTCAAGTGATTCTCCTACCTCAGCCTCCTCAGTAGCTGGGATTACAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGA MSSNCTSTTAVAVAPLSASKTKTKKKHFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEGKVGDMLLQYG*SFIGTESKDGVSPCRPGWSAEARSRLTATSTSPVQVILLPQPPQ*LGLQVGNIVQVTQPEGMHSTVSNQTSGI*RYCCYFCMFIANRRFL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 33715 TPM4::SYCE2 ENSG00000167460.17::ENSG00000161860.8 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2532 TRUE 4608 TRUE 1751 TPM4 ENSG00000167460.17 protein_coding + + chr19:16067021-16103002:+ chr19:16089120:+ chr19:16177831-16213812:+ chr19:16199930:+ SYCE2 ENSG00000161860.8 protein_coding - - chr19:12898786-12919293:- chr19:12904666:- chr19:13009600-13030107:- chr19:13015480:- chr19:16089940,chr19:16090165,chr19:16089941 chr19:12914613,chr19:12914613,chr19:12914612 NA NA chr19:16200750,chr19:16200975,chr19:16200751 chr19:13025427,chr19:13025427,chr19:13025426 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tropomyosin|1-82|1.4e-16^DUF745|2-87|0.0066^DUF3450|3-59|0.047^CENP-F_leu_zip|3-115|0.00069^FPP|3-98|0.0036^EzrA|3-82|0.009^AAA_13|3-207|0.043^Snapin_Pallidin|3-23|5.7^MAD|3-104|0.0016^CCDC144C|4-237|0.016^DUF4200|4-61|0.00055^Fez1|4-57|0.51^TPR_MLP1_2|4-40|0.82^NBP1|6-94|3e-05^CCDC93_CC|6-146|0.029^Crescentin|7-156|0.047^GAS|8-169|0.016^ADIP|8-70|0.014^CALCOCO1|8-92|0.0035^TMF_DNA_bd|9-54|0.13^Golgin_A5|9-115|0.037^HMMR_N|9-148|0.097^XhlA|11-51|0.6^CLZ|13-72|4.5e-09^FliJ|14-28|4.6^PspA_IM30|15-103|0.3^Nuf2_DHR10-like|16-122|8.7e-05^MscS_porin|16-136|0.0012^Uds1|16-71|0.025^HEF_HK|17-51|0.26^ATG16|18-106|1.5e-05^Laminin_I|18-92|1.4e-06^HrpB7|18-91|0.0036^Lebercilin|20-134|0.004^Fib_alpha|22-73|0.033^LOH1CR12|22-69|0.0038^ERM_helical|23-90|1e-07^Exonuc_VII_L|23-138|0.00095^NPV_P10|28-72|0.0038^TPR_MLP1_2|28-125|0.0066^DUF1664|29-117|5.3e-05^FH2|29-104|0.0017^Laminin_II|30-105|8e-07^Snapin_Pallidin|31-101|0.0002^FliJ|31-133|0.0013^DUF948|32-89|0.0063^EzrA|33-117|0.049^HEF_HK|36-72|0.43^DUF6507|37-123|4.4e-05^TMF_DNA_bd|41-82|0.0054^SNARE|45-69|0.35^XhlA|46-88|0.00034^Uds1|46-113|0.0012^DUF3450|62-131|1.2^Fez1|63-178|0.015^CLZ|65-115|0.036^HrpB7|65-122|0.07^DUF4200|65-151|7.1^Tropomyosin|67-283|1e-76^ADIP|69-129|0.55^CALCOCO1|75-276|0.0027^TMF_DNA_bd|76-109|0.00031^NPV_P10|84-115|0.14^NBP1|85-116|0.18^DUF948|86-123|0.54^Uds1|86-171|0.14^DUF1664|87-142|0.017^Laminin_I|88-165|0.0083^ERM_helical|89-201|0.16^DUF745|89-184|0.0049^XhlA|91-124|0.028^HEF_HK|93-131|0.25^FH2|94-162|0.48^FPP|95-234|0.00025^MAD|95-274|0.043^SNARE|96-127|0.006^Fib_alpha|97-163|0.4^Snapin_Pallidin|98-118|0.45^ATG16|107-211|0.48^XhlA|110-150|0.21^Laminin_II|112-182|0.2^GAS|112-205|3^Lebercilin|117-181|1.2^EzrA|117-282|0.0015^DUF948|117-165|1.4^TPR_MLP1_2|127-236|0.077^ADIP|132-181|1.6^Nuf2_DHR10-like|136-184|0.2^CENP-F_leu_zip|137-282|3.3e-05^HrpB7|138-189|0.11^Crescentin|139-281|0.00019^DUF1664|139-194|0.76^CCDC93_CC|139-267|0.17^HMMR_N|140-272|0.021^Lebercilin|143-280|0.05^MscS_porin|144-266|0.21^CLZ|145-172|5^Snapin_Pallidin|145-183|1^DUF3450|147-212|0.076^HEF_HK|147-176|1.6^Exonuc_VII_L|149-266|0.0096^ERM_helical|156-221|0.011^FliJ|157-243|0.082^XhlA|167-208|0.0016^Golgin_A5|170-281|0.034^CLZ|171-216|0.044^Snapin_Pallidin|171-240|0.023^ADIP|172-210|2.4^TMF_DNA_bd|172-199|0.47^TPR_MLP1_2|173-281|0.0051^Uds1|176-207|0.027^Laminin_I|179-276|0.44^FH2|183-265|0.0041^CCDC144C|188-280|0.00085^DUF6507|191-250|0.16^DUF745|191-282|0.0025^Laminin_II|192-277|1.8e-07^Nuf2_DHR10-like|192-281|0.0078^LOH1CR12|192-251|0.094^HrpB7|193-280|0.00024^Fez1|193-272|0.0004^Fib_alpha|193-270|0.0008^DUF948|193-225|0.67^DUF3450|194-281|7e-07^AAA_13|194-266|0.0063^Uds1|194-274|0.086^HEF_HK|195-222|0.65^DUF1664|198-266|0.00025^NBP1|198-276|0.9^ERM_helical|201-275|0.013^ADIP|205-277|7.4e-05^DUF4200|205-276|0.00026^TMF_DNA_bd|209-264|8.1e-05^XhlA|216-253|0.022^ATG16|221-281|0.0011^GAS|223-276|8.5e-05^PspA_IM30|223-268|6.3e-05^CLZ|227-281|3.5e-05^LOH1CR12|227-279|1.4^HEF_HK|230-261|0.18^NPV_P10|232-232|2.7^SNARE|233-253|1.1^FPP|242-276|0.0034^Snapin_Pallidin|242-282|0.006^FliJ|242-276|0.13^XhlA|243-275|0.0031^DUF948|244-282|0.0016 ATG17_like-PARTIAL|~132-155|7.2e-06^DUF1829-PARTIAL|~132-134|3.5e-05^CREPT-PARTIAL|~132-152|7.8e-05^Apolipoprotein-PARTIAL|~132-138|8.5e-05^Allexi_40kDa-PARTIAL|~132-158|8.7e-05^HEPN_Apea-PARTIAL|~132-138|9.4e-05^ISN1-PARTIAL|~132-163|9.1e-05^GBP_C-PARTIAL|~132-138|0.00012^FapA-PARTIAL|~132-142|0.00013^PIN_8-PARTIAL|~132-136|0.00019^YtxH-PARTIAL|~132-138|0.00021^TBCC_N-PARTIAL|~132-142|0.00025^vRNAP_dom-PARTIAL|~132-155|0.00033^Exonuc_VII_L-PARTIAL|~132-142|0.00028^MerR-DNA-bind-PARTIAL|~132-148|0.00035^ApoC-I-PARTIAL|~132-137|0.23^Baculo_PEP_C-PARTIAL|~132-156|0.2^Matrilin_ccoil-PARTIAL|~132-138|0.18^DUF948-PARTIAL|~132-156|0.0036^COG5_N-PARTIAL|~132-157|0.0023^DUF4709-PARTIAL|~132-137|0.001^DUF4709|132-159|0.88^DUF5713-PARTIAL|~132-159|0.0094^CLZ-PARTIAL|~132-136|0.26^Cep57_MT_bd-PARTIAL|~132-148|1.8^NPV_P10-PARTIAL|~132-141|0.024^BRE1-PARTIAL|~132-148|0.0053^BORCS6-PARTIAL|~132-154|0.00038^DUF1664-PARTIAL|~132-151|0.0098 ["TPM4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:3.15Mb] 16 17 16 10.68 ONLY_REF_SPLICE YES_LDAS 0.3333 GT 1.9656 AG 1.9329 ENST00000646974.2 1-639 ENST00000293695.8 132-657 chr19|+|[0]16067625-16067738[2]|[0]16076047-16076172[2]|[0]16081913-16082046[1]|[2]16086423-16086540[2]|[0]16088027-16088097[1]|[2]16089045-16089120[2]<==>chr19|-|[2]12899341-12899385[0]|[2]12900004-12900120[0]|[2]12900460-12900648[0]|[2]12904492-12904666[2] atggaggccatcaagaagaaaatgcagatgctgaagttggacaaggagaatgccatcgaccgcgcggagcaggcggaggcggataagaaagccgctgaggacaagtgcaagcaggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctggataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaaggcctccgacgctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggccacggccctgcagaagctggaggaggcagaaaaagctgcagatgagagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaatacgaggaggtagctcgtaagctggtcatcctggagggtgagctggagagggcagaggagcgtgcggaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgttactaacaatctgaaatctctggaggctgcatctgaaaagTGCCAGTTGCCAGCTGACGGTCCTGGAAGGGAAGTCGGGACTCTACTTCTCCTCTCTGGACTCAAGCATTGACATCCTGCAGAAGAGAGCCCAGGAGCTGATCGAAAACATCAACAAGAGCCGGCAAAAGGACCATGCACTCATGACCAACTTCAGGAACAGCCTGAAGACCAAGGTTTCGGATCTGACAGAGAAATTAGAGGAGAGGATCTATCAGATTTATAATGACCACAACAAGATCATCCAGGAAAAGCTCCAAGAGTTCACCCAGAAAATGGCAAAGATCAGCCATTTGGAGACAGAGCTCAAACAAGTCTGCCACAGCGTGGAGACTGTGTACAAAGACCTGTGTCTCCAGCCTGAGCAGAGCCTAAGACTCAGATGGGGGCCAGACCACTCTAGGGGAAAGTCCCCACCACGTCCCGGCAACTCACAGCCCCCAGACGTGTTCGTTTCTTCTGTGGCTGAAACTACTTCTCAGGCCACTGCTTCAGAAGTACAGACCAACAGAGATGGTGAATGCTGA MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKYSEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKCQLPADGPGREVGTLLLLSGLKH*HPAEESPGADRKHQQEPAKGPCTHDQLQEQPEDQGFGSDREIRGEDLSDL**PQQDHPGKAPRVHPENGKDQPFGDRAQTSLPQRGDCVQRPVSPA*AEPKTQMGARPL*GKVPTTSRQLTAPRRVRFFCG*NYFSGHCFRSTDQQRW*ML FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tropomyosin 4 1 ALCL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33720 LAMP1::MCF2L ENSG00000185896.11::ENSG00000126217.22 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2545 FALSE NA FALSE NA LAMP1 ENSG00000185896.11 protein_coding + + chr13:113297239-113323672:+ chr13:113297495:+ chr13:113951554-113977987:+ chr13:113951810:+ MCF2L ENSG00000126217.22 protein_coding + + chr13:112894378-113099742:+ chr13:113064304:+ chr13:113548692-113754056:+ chr13:113718618:+ chr13:113299362,chr13:113299666 chr13:113062934,chr13:113062937 NA NA chr13:113953677,chr13:113953981 chr13:113717248,chr13:113717251 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Lamp2_2nd|14-18|2^Lamp-PARTIAL|30-61~|5.2e-13 RhoGEF-PARTIAL|~490-531|0.35^Spectrin-PARTIAL|~490-491|0.15^DUF4299-PARTIAL|~490-501|0.073^DUF5344-PARTIAL|~490-497|0.98^ARL2_Bind_BART-PARTIAL|~490-519|0.015^KxDL-PARTIAL|~490-528|0.45^RhoGEF|605-779|4.6e-43^ARL2_Bind_BART|710-759|0.033^Spectrin|741-769|1.7^PH_10|796-852|0.00017^PH|812-914|4.3e-12^DUF4299|860-907|0.0015^Spectrin|905-922|6.3^SH3_9|1053-1062|3.6^SH3_2|1088-1139|3.2e-09^SH3_1|1091-1134|3.4e-08^SH3_9|1091-1135|3.3e-06 ["DepMap2023","ChimerSeq","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.20Mb] 12 1 12 1 ONLY_REF_SPLICE YES_LDAS 0.1624 GT 1.5656 AG 1.9899 ENST00000332556.5 1-61 ENST00000453297.6 490-3546 chr13|+|[0]113297435-113297495[0]<==>chr13|+|[0]113064304-113064420[2]|[0]113064936-113065085[2]|[0]113066046-113066170[1]|[2]113070059-113070173[2]|[0]113074444-113074563[2]|[0]113074998-113075189[2]|[0]113075966-113076157[2]|[0]113077052-113077211[0]|[1]113078363-113078436[2]|[0]113078666-113078739[1]|[2]113081213-113081279[2]|[0]113082427-113082542[1]|[2]113083998-113084067[2]|[0]113084892-113084984[2]|[0]113085086-113085178[2]|[0]113086124-113086249[2]|[0]113087235-113087456[2]|[0]113087707-113087799[2]|[0]113088327-113088405[0]|[1]113088562-113088628[1]|[2]113089610-113089728[0]|[1]113090068-113090160[0]|[1]113091121-113091195[0]|[1]113094514-113094635[2]|[0]113096371-113096483[1]|[2]113096550-113096653[0]|[1]113096774-113096859[2] atggcggcccccggcagcgcccggcgacccctgctgctgctactgctgttgctgctgctcgGTCATAATGCTGAGCTCCGTACCAGACTTACACGGTTACATCGATAAGTCGCAGCTGACCGAGGACCTGGGTGGGACCCTGGACTACTGCCACTCCCGGTGGCTGTGCCAGCGCACGGCCATCGAAAGTTTCGCCCTCATGGTGAAGCAGACGGCTCAGATGCTGCAGTCCTTCGGGACCGAGCTGGCTGAAACAGAGCTGCCCAATGACGTCCAGTCGACAAGCTCAGTGCTGTGTGCGCACACAGAGAAGAAGGACAAGGCGAAGGAGGATTTGAGGCTGGCACTGAAAGAGGGGCACAGTGTCCTGGAGAGCCTCAGGGAGCTGCAGGCTGAGGGCTCAGAGCCCAGTGTGAACCAGGACCAGCTTGACAACCAGGCCACCGTGCAGAGGCTCCTGGCCCAGCTGAACGAAACCGAGGCTGCCTTCGATGAGTTCTGGGCAAAGCATCAGCAGAAACTGGAGCAGTGTCTGCAGCTCCGGCACTTTGAGCAGGGCTTCCGGGAGGTCAAAGCCATCTTGGACGCAGCGTCCCAGAAGATAGCAACCTTCACAGACATCGGCAACAGCCTGGCGCATGTGGAGCACCTGCTGAGGGACCTGGCCAGCTTCGAGGAGAAATCAGGCGTGGCCGTGGAGAGGGCCCGGGCCCTGTCTCTGGACGGCGAGCAGCTCATTGGGAACAAGCACTACGCGGTAGACTCCATCCGCCCAAAGTGCCAGGAGCTCCGGCACCTCTGTGACCAGTTCTCTGCGGAGATCGCAAGGAGGAGGGGGCTGCTCAGCAAGTCCCTGGAGCTGCACCGCCGCCTGGAGACGTCCATGAAGTGGTGTGATGAAGGGATTTACCTGCTGGCCTCACAACCTGTGGACAAGTGCCAGTCCCAGGACGGCGCGGAGGCTGCCCTCCAGGAAATCGAGAAGTTTTTGGAGACCGGTGCGGAAAATAAGATCCAGGAGCTCAACGCGATTTACAAGGAATACGAATCCATCCTCAACCAAGATCTCATGGAGCACGTGCGAAAGGTCTTCCAGAAGCAGGCAAGCATGGAGGAGGTGTTCCACCGCAGGCAGGCCAGCCTGAAGAAGCTGGCGGCCAGGCAGACGCGGCCCGTGCAGCCGGTGGCCCCCAGACCCGAGGCACTGGCAAAGTCGCCCTGCCCCTCCCCAGGCATTCGGCGAGGCTCTGAGAACTCCAGCTCCGAGGGCGGTGCGCTCCGGAGAGGGCCCTACCGGAGGGCCAAGAGTGAGATGAGTGAGAGCCGGCAGGGCCGCGGCTCAGCGGGGGAGGAGGAGGAAAGCCTGGCCATCCTGCGCAGGCACGTGATGAGCGAGCTCCTGGACACAGAACGGGCCTACGTGGAGGAGCTGCTGTGCGTCCTGGAGGGCTACGCCGCGGAGATGGATAACCCACTGATGGCTCACCTCCTGTCAACAGGCCTTCACAACAAGAAGGATGTTTTGTTTGGAAACATGGAGGAAATCTATCACTTCCACAACAGGATATTCCTCAGGGAGCTGGAAAACTACACTGACTGCCCAGAACTGGTTGGAAGATGCTTTCTGGAGAGGATGGAAGATTTCCAGATCTATGAGAAGTACTGTCAGAACAAGCCCCGCTCTGAGAGCCTGTGGAGACAGTGCTCCGACTGCCCGTTTTTCCAGGAATGCCAGAGAAAGCTGGACCACAAGCTGAGCCTGGACTCCTACCTGCTGAAGCCAGTGCAGAGGATCACCAAGTACCAGCTGCTGCTCAAGGAAATGCTGAAATACAGCAGGAACTGCGAGGGGGCTGAGGACCTGCAGGAGGCGCTGAGCTCCATCCTGGGCATCCTGAAGGCCGTGAACGACTCCATGCACCTCATCGCTATCACCGGCTATGACGGGAATCTCGGCGACCTGGGCAAGCTGCTGATGCAGGGCTCGTTCAGCGTCTGGACCGACCACAAGAGGGGCCACACCAAGGTGAAGGAGCTGGCCAGGTTCAAGCCCATGCAGCGGCACCTGTTCCTGCACGAGAAGGCAGTGCTCTTCTGCAAGAAGAGGGAGGAGAATGGGGAGGGGTATGAGAAAGCTCCCTCCTACAGCTACAAGCAGTCCTTAAACATGGCTGCCGTTGGCATTACGGAGAACGTGAAGGGAGATGCTAAGAAGTTCGAGATCTGGTACAACGCGCGCGAGGAGGTCTACATCGTCCAGGCGCCAACTCCTGAGATTAAAGCCGCGTGGGTGAATGAAATTCGGAAAGTGCTGACCAGCCAGCTGCAGGCTTGTAGAGAAGCCAGCCAGCACCGGGCGCTGGAGCAGTCACAGAGCCTGCCCCTGCCGGCCCCGACCAGCACCAGTCCCTCAAGAGGAAACTCAAGGAACATCAAGAAGCTGGAAGAAAGGAAAACAGACCCCCTAAGCCTGGAGGGATACGTCAGCTCAGCGCCACTGACAAAGCCCCCCGAAAAGGGCAAAGATGACACGGTCACTAGCTCTGCCTCAGAAAGCTCTGCGCTTTCCAGAAAGCGCTTTACCCTGCAGGGTTTTGCTAACCTCAAAGGTCAGAAAGCTTCTCCTACCAGTCCTGACAAAAAAGCCAAGCGGCATGAAGTAAAGAGCGACCCGACTCCCTTTGGTGTGCGAGGTTGGAGCAAAACGTCCCACTCACTGGAGGCACCTGAGGACGACGGGGGCTGGTCAAGTGCAGAGGAGCAGATTAACTCGTCCGACGCAGAGGAGGACGGCGGGTTGGGCCCCAAGAAGCTGGTTCCAGGTAAATACACGGTCGTGGCGGACCACGAGAAGGGAGGCCCCGATGCGCTGCGCGTGAGGAGCGGGGACGTGGTGGAGCTGGTGCAGGAGGGCGACGAGGGCCTCTGGTACGTCAGGGACCCGACCACTGGCAAGGAGGGCTGGGTGCCGGCCAGCAGCCTGTCCGTCCGGCTCGGCCCGTCCGGCTCGGCCCAGTGCCTGAGCAGCTCAGAGTCGAGCCCGGGGTCGGCCGTGCTGAGCAACTCGTCCAGCTGCAGCGAGGGCGGCCAGGCCCCCTTCTCCGACCTGCAGGGGTAG MAAPGSARRPLLLLLLLLLLGHNAELRTRLTRLHR*VAADRGPGWDPGLLPLPVAVPAHGHRKFRPHGEADGSDAAVLRDRAG*NRAAQ*RPVDKLSAVCAHREEGQGEGGFEAGTERGAQCPGEPQGAAG*GLRAQCEPGPA*QPGHRAEAPGPAERNRGCLR*VLGKASAETGAVSAAPAL*AGLPGGQSHLGRSVPEDSNLHRHRQQPGACGAPAEGPGQLRGEIRRGRGEGPGPVSGRRAAHWEQALRGRLHPPKVPGAPAPL*PVLCGDRKEEGAAQQVPGAAPPPGDVHEVV**RDLPAGLTTCGQVPVPGRRGGCPPGNREVFGDRCGK*DPGAQRDLQGIRIHPQPRSHGARAKGLPEAGKHGGGVPPQAGQPEEAGGQADAARAAGGPQTRGTGKVALPLPRHSARL*ELQLRGRCAPERALPEGQE*DE*EPAGPRLSGGGGGKPGHPAQARDERAPGHRTGLRGGAAVRPGGLRRGDG*PTDGSPPVNRPSQQEGCFVWKHGGNLSLPQQDIPQGAGKLH*LPRTGWKMLSGEDGRFPDL*EVLSEQAPL*EPVETVLRLPVFPGMPEKAGPQAEPGLLPAEASAEDHQVPAAAQGNAEIQQELRGG*GPAGGAELHPGHPEGRERLHAPHRYHRL*RESRRPGQAADAGLVQRLDRPQEGPHQGEGAGQVQAHAAAPVPAREGSALLQEEGGEWGGV*ESSLLQLQAVLKHGCRWHYGEREGRC*EVRDLVQRARGGLHRPGANS*D*SRVGE*NSESADQPAAGL*RSQPAPGAGAVTEPAPAGPDQHQSLKRKLKEHQEAGRKENRPPKPGGIRQLSATDKAPRKGQR*HGH*LCLRKLCAFQKALYPAGFC*PQRSESFSYQS*QKSQAA*SKERPDSLWCARLEQNVPLTGGT*GRRGLVKCRGAD*LVRRRGGRRVGPQEAGSR*IHGRGGPREGRPRCAAREERGRGGAGAGGRRGPLVRQGPDHWQGGLGAGQQPVRPARPVRLGPVPEQLRVEPGVGRAEQLVQLQRGRPGPLLRPAGV FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33721 PIP4K2B::RAD51C ENSG00000276293.5::ENSG00000108384.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2530 TRUE 4607 TRUE 1750 PIP4K2B ENSG00000276293.5 protein_coding - - chr17:38765691-38800126:- chr17:38777687:- chr17:36921944-36956379:- chr17:36933940:- RAD51C ENSG00000108384.16 protein_coding + + chr17:58692573-58735611:+ chr17:58732481:+ chr17:56769934-56812972:+ chr17:56809842:+ chr17:38772398,chr17:38772401 chr17:58720858,chr17:58720855 NA NA chr17:36928651,chr17:36928654 chr17:56798219,chr17:56798216 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame PIP5K|127-414|1.8e-86 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:19.89Mb] 11 18 11 3.67 ONLY_REF_SPLICE YES_LDAS 0.1832 GT 1.7968 AG 1.9899 ENST00000619039.5 1-807 ENST00000413590.5 604-772 chr17|-|[2]38777687-38777800[0]|[2]38778334-38778372[0]|[2]38779383-38779529[0]|[2]38780452-38780604[0]|[2]38784243-38784339[2]|[1]38786823-38786920[0]|[2]38799266-38799424[0]<==>chr17|+|[2]58732481-58732544[2]|[0]58734118-58734222[2] atgtcgtccaactgcaccagcaccacggcggtggcggtggcgccgctcagcgccagcaagaccaagaccaagaagaagcatttcgtgtgccagaaagtgaagctattccgggccagcgagccgatcctcagcgtcctgatgtggggggtgaaccacacgatcaatgagctgagcaatgttcctgttcctgtcatgctaatgccagatgacttcaaagcctacagcaagatcaaggtggacaatcatctcttcaataaggagaacctgcccagccgctttaagtttaaggagtattgccccatggtgttccgaaaccttcgggagaggtttggaattgatgatcaggattaccagaattcagtgacgcgcagcgcccccatcaacagtgacagccagggtcggtgtggcacgcgtttcctcaccacctacgaccggcgctttgtcatcaagactgtgtccagcgaggacgtggcggagatgcacaacatcttaaagaaataccaccagtttatagtggagtgtcatggcaacacgcttttgccacagttcctgggcatgtaccgcctgaccgtggatggtgtggaaacctacatggtggttaccaggaacgtgttcagccatcggctcactgtgcatcgcaagtatgacctcaagggttctacggttgccagagaagcgagcgacaaggagaaggccaaggacttgccaacattcaaagacaatgacttcctcaatgaagggcagaagctgcatgtgggagaggagagtaaaaagaacttcctggagaaactgaagcgggacgttgagCAGGTTGGCAACATTGTACAAGTCACCCAGCCAGAAGGAATGCACAGTACTGTTTCAAATCAAACCTCAGGGATTTAGAGATACTGTTGTTACTTCTGCATGTTCATTGCAAACAGAAGGTTCCTTGAGCACCCGGAAACGGTCACGAGACCCAGAGGAAGAATTATAA MSSNCTSTTAVAVAPLSASKTKTKKKHFVCQKVKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEQVGNIVQVTQPEGMHSTVSNQTSGI*RYCCYFCMFIANRRFLEHPETVTRPRGRII FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE RAD51 paralog C 1 Yes ovarian, breast familial breast-ovarian cancer susceptibility 3, fanconi anaemia, epithelial TSG frameshift, missense, nonsense, splice_site 33723 TRIM37::MYO19 ENSG00000108395.14::ENSG00000278259.5 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4604 TRUE 1747 TRIM37 ENSG00000108395.14 protein_coding - - chr17:58982638-59106921:- chr17:59084002:- chr17:57059999-57184282:- chr17:57161363:- MYO19 ENSG00000278259.5 protein_coding - - chr17:36495636-36543435:- chr17:36507512:- chr17:34851480-34899284:- chr17:34863351:- chr17:59082066,chr17:59081712,chr17:59082076 chr17:36508181,chr17:36508182,chr17:36508188 NA NA chr17:57159427,chr17:57159073,chr17:57159437 chr17:34864020,chr17:34864021,chr17:34864027 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-B_box|13-40|0.71^zf-C3HC4_3|14-59|4.9e-08^zf-C3HC4_2|14-54|5.4e-06^zf-B_box|49-60|2.1^zf-B_box|90-132|1.1e-13^zf-C3HC4_3|102-118|3.1^zf-C3HC4_2|108-114|10^HlyD_2|132-229|8.3e-06^ANIS5_cation-bd|132-193|0.0002^BORCS6|133-189|0.0001^FUSC|141-234|0.0009^Baculo_PEP_C|147-225|0.00066^MRFAP1|149-200|7.4e-05^BORCS6|220-234|1.6^MATH-PARTIAL|284-369~|6.7e-10 none ["TRIM37:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:22.44Mb] 10 1 10 0.34 ONLY_REF_SPLICE YES_LDAS 0.1291 GT 1.7465 AG 1.9086 ENST00000262294.12 1-369 ENST00000614623.5 1354-2913 chr17|-|[2]59084002-59084089[2]|[1]59088291-59088407[2]|[1]59091300-59091340[0]|[2]59104293-59104394[0]|[2]59106441-59106461[0]<==>chr17|-|[2]36496251-36496406[0]|[2]36498266-36498559[0]|[2]36499075-36499160[1]|[0]36500830-36500959[0]|[2]36501069-36501235[1]|[0]36503097-36503200[2]|[1]36503950-36504020[0]|[2]36505297-36505404[0]|[2]36506456-36506608[0]|[2]36506963-36507139[0]|[2]36507399-36507512[0] atggatgaacagagcgtggagagcattgctgaggttttccgatgtttcatttgtatggagaaattgcgggatgcacgcctgtgtcctcattgctccaaactgtgttgtttcagctgtattaggcgctggctgacagagcagagagctcaatgtcctcattgccgtgctccactccagctacgagaactagtaaattgtcgttgggcagaagaagtaacacaacagcttgatactcttcaactctgcagtctcaccaaacatgaagaaaatgaaaaggacaaatgtgaaaatcaccatgaaaaacttagtgtattttgctggacttgtaagaagtgtatctgccatcagtgtgcactttggggaggaatgGAGGAATACGCAGTTGAGGGCCTGGAGTGGTCATTCATCAACTACCAGGACAACCAGCCCTGTTTGGATCTCATTGAGGGAAGCCCCATCAGCATCTGCTCCCTCATAAATGAGGAATGCCGCCTCAATCGACCCAGCAGCGCAGCCCAGCTCCAGACACGCATTGAGACTGCCCTGGCAGGCAGCCCCTGCCTGGGCCACAATAAGCTCAGCCGGGAGCCCAGCTTCATTGTGGTGCATTATGCGGGGCCTGTGCGGTACCACACAGCAGGCCTGGTGGAGAAGAACAAGGACCCTATCCCACCTGAGCTGACCAGGCTCCTGCAGCAATCCCAGGACCCCCTGCTCATGGGGCTGTTTCCTACTAACCCCAAAGAGAAGACCCAGGAGGAACCCCCTGGCCAGAGCAGGGCCCCTGTGTTGACCGTGGTGTCCAAGTTCAAGGCCTCACTGGAGCAGCTTCTGCAGGTCCTACACAGCACCACGCCCCACTACATTCGCTGCATCAAGCCCAACAGCCAGGGCCAGGCGCAGACCTTTCTCCAAGAGGAGGTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCATATCAGTGCTGCTGGCTTCCCCATCCGGGTCTCTCACCGAAACTTTGTAGAACGATACAAGTTACTAAGAAGGCTTCATCCTTGCACATCCTCTGGCCCCGACAGCCCATATCCTGCCAAAGGGCTCCCTGAATGGTGTCCACACAGCGAGGAAGCCACGCTTGAACCTCTCATCCAGGACATTCTCCACACTCTGCCGGTCCTAACTCAGGCAGCAGCCATAACTGGTGACTCGGCTGAGGCCATGCCAGCCCCCATGCACTGTGGCAGGACCAAGGTGTTCATGACTGACTCTATGCTGGAGCTTCTGGAATGTGGGCGTGCCCGGGTGCTGGAGCAGTGTGCCCGCTGCATCCAGGGTGGCTGGAGGCGACACCGGCACCGAGAGCAGGAGCGGCAGTGGCGGGCCGTCATGCTCATCCAGGCAGCCATTCGTTCCTGGTTAACTCGGAAACACATCCAGAGGCTGCATGCAGCTGCCACAGTCATCAAGCGTGCATGGCAGAAGTGGAGAATCAGAATGGCCTGCCTTGCTGCTAAAGAGCTGGATGGTGTGGAAGAAAAACACTTCTCTCAAGCTCCCTGTTCCCTGAGCACCTCGCCGCTGCAGACCAGGCTCCTGGAGGCAATAATCCGCCTCTGGCCCCTGGGACTGGTCCTGGCCAATACGGCTATGGGTGTAGGCAGCTTTCAGAGGAAATTAGTGGTCTGGGCTTGCCTCCAGCTCCCCAGGGGCAGCCCCAGTAGCTACACTGTCCAGACAGCACAAGACCAGGCTGGTGTCACGTCCATCCGAGCGCTGCCTCAGGGATCGATAAAGTTTCACTGCAGAAAGTCTCCACTGCGGTATGCTGACATCTGCCCTGAACCTTCACCCTACAGCATTACAGGCTTTAATCAGATTCTGCTGGAAAGACACAGGCTGATCCACGTGACCTCTTCTGCCTTCACTGGGCTGGGGTGA MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMEEYAVEGLEWSFINYQDNQPCLDLIEGSPISICSLINEECRLNRPSSAAQLQTRIETALAGSPCLGHNKLSREPSFIVVHYAGPVRYHTAGLVEKNKDPIPPELTRLLQQSQDPLLMGLFPTNPKEKTQEEPPGQSRAPVLTVVSKFKASLEQLLQVLHSTTPHYIRCIKPNSQGQAQTFLQEEVLSQLEACGLVETIHISAAGFPIRVSHRNFVERYKLLRRLHPCTSSGPDSPYPAKGLPEWCPHSEEATLEPLIQDILHTLPVLTQAAAITGDSAEAMPAPMHCGRTKVFMTDSMLELLECGRARVLEQCARCIQGGWRRHRHREQERQWRAVMLIQAAIRSWLTRKHIQRLHAAATVIKRAWQKWRIRMACLAAKELDGVEEKHFSQAPCSLSTSPLQTRLLEAIIRLWPLGLVLANTAMGVGSFQRKLVVWACLQLPRGSPSSYTVQTAQDQAGVTSIRALPQGSIKFHCRKSPLRYADICPEPSPYSITGFNQILLERHRLIHVTSSAFTGLG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33724 MED13::BCAS3 ENSG00000108510.10::ENSG00000141376.24 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2527 TRUE 4606 TRUE 1749 MED13 ENSG00000108510.10 protein_coding - - chr17:61942605-62065278:- chr17:62052537:- chr17:60019966-60142639:- chr17:60129898:- BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61391977:+ chr17:58754814-59470199:+ chr17:59469338:+ chr17:62052111,chr17:62052114 chr17:61382953,chr17:61382950 NA NA chr17:60129472,chr17:60129475 chr17:59460314,chr17:59460311 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["BCAS3:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.55Mb] 10 10 10 2 ONLY_REF_SPLICE YES_LDAS 0.1499 GT 1.5546 AG 1.9086 ENST00000397786.7 1-470 ENST00000589222.5 2751-2787 chr17|-|[1]62052537-62052705[1]|[0]62063067-62063301[0]|[2]62065140-62065205[0]<==>chr17|+|[2]61391977-61392013[2] atgagtgcctccttcgtgccgaacggggccagcctggaagattgtcactgtaacctcttctgcctggctgacttgacaggaattaagtggaaaaaatatgtatggcaaggcccaacttctgcccctattctgtttcctgtgacagaagaagaccccattttgagcagttttagtcgctgccttaaggcagatgtacttggtgtttggcggcgagatcaaagacctggaagaagagaattgtggatattttggtggggtgaagaccccagttttgctgaccttattcaccatgacttatcagaagaagaagatggagtgtgggagaatggactttcctatgaatgccgtactctgcttttcaaagcagttcacaatctattggaacggtgtttaatgaacaggaattttgtacgtattggcaagtggtttgtaaagccttatgaaaaagatgaaaaacctataaataaaagAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAA MSASFVPNGASLEDCHCNLFCLADLTGIKWKKYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFWWGEDPSFADLIHHDLSEEEDGVWENGLSYECRTLLFKAVHNLLERCLMNRNFVRIGKWFVKPYEKDEKPINKRTSARGKHRDSE* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33725 BCAS3::ENSG00000285939 ENSG00000141376.24::ENSG00000285939.2 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA BCAS3 ENSG00000141376.24 protein_coding + + chr17:60677453-61392838:+ chr17:61084564:+ chr17:58754814-59470199:+ chr17:59161925:+ ENSG00000285939 ENSG00000285939.2 lncRNA - - chr17:53276760-54365634:- chr17:54066822:- chr17:51354121-52442995:- chr17:52144183:- chr17:61194788,chr17:61194789,chr17:61194791,chr17:61194794,chr17:61194799,chr17:61194803,chr17:61194805,chr17:61194779,chr17:61194807,chr17:61194812,chr17:61194820,chr17:61194822,chr17:61194824,chr17:61194775,chr17:61194829,chr17:61194770,chr17:61194772,chr17:61194773,chr17:61194774,chr17:61194777,chr17:61194771 chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845,chr17:54099845 NA NA chr17:59272149,chr17:59272150,chr17:59272152,chr17:59272155,chr17:59272160,chr17:59272164,chr17:59272166,chr17:59272140,chr17:59272168,chr17:59272173,chr17:59272181,chr17:59272183,chr17:59272185,chr17:59272136,chr17:59272190,chr17:59272131,chr17:59272133,chr17:59272134,chr17:59272135,chr17:59272138,chr17:59272132 chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206,chr17:52177206 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["BCAS3:Oncogene"] 10 7 10 7 ONLY_REF_SPLICE YES_LDAS 0.2123 GT 1.9329 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33727 AHCTF1::NAAA ENSG00000153207.16::ENSG00000138744.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2520 TRUE 4601 TRUE 1744 AHCTF1 ENSG00000153207.16 protein_coding - - chr1:246839098-246931948:- chr1:246931578:- chr1:247002400-247095250:- chr1:247094880:- NAAA ENSG00000138744.16 protein_coding - - chr4:75913660-75941013:- chr4:75921123:- chr4:76834813-76862166:- chr4:76842276:- chr1:246923305,chr1:246923305,chr1:246922873,chr1:246923307,chr1:246923307 chr4:75926307,chr4:75926306,chr4:75926306,chr4:75926305,chr4:75926306 NA NA chr1:247086607,chr1:247086607,chr1:247086175,chr1:247086609,chr1:247086609 chr4:76847460,chr4:76847459,chr4:76847459,chr4:76847458,chr4:76847459 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr1--chr4] 9 18 9 1.5 ONLY_REF_SPLICE YES_LDAS 0.1311 GT 1.7232 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33729 NCOA2::ZNF704 ENSG00000140396.13::ENSG00000164684.13 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2544 FALSE NA FALSE NA NCOA2 ENSG00000140396.13 protein_coding - - chr8:70109782-70403808:- chr8:70403700:- chr8:71022017-71316043:- chr8:71315935:- ZNF704 ENSG00000164684.13 protein_coding - - chr8:80628451-80874781:- chr8:80821615:- chr8:81540686-81787016:- chr8:81733850:- chr8:70366369 chr8:80822999 NA NA chr8:71278604 chr8:81735234 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["NCOA2:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr8:10.22Mb] 9 4 9 4 ONLY_REF_SPLICE YES_LDAS 0.1624 GT 1.5058 AG 1.7465 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE nuclear receptor coactivator 2 (TIF2) 1 Yes AML, chondrosarcoma, rhabdomyosarcoma leukaemia_lymphoma, mesenchymal oncogene, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33730 VAPB::IKZF3 ENSG00000124164.16::ENSG00000161405.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2523 TRUE 4602 TRUE 1745 VAPB ENSG00000124164.16 protein_coding + + chr20:58389229-58451101:+ chr20:58389517:+ chr20:56964285-57026157:+ chr20:56964573:+ IKZF3 ENSG00000161405.17 protein_coding - - chr17:39757718-39864312:- chr17:39788374:- chr17:37913971-38020565:- chr17:37944627:- chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858,chr20:58416858 chr17:39827356,chr17:39827365,chr17:39827368,chr17:39827338,chr17:39827369,chr17:39827371,chr17:39827379,chr17:39827383,chr17:39827389,chr17:39827390,chr17:39827393,chr17:39827397,chr17:39827401,chr17:39827337,chr17:39827341,chr17:39827342,chr17:39827344 NA NA chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914,chr20:56991914 chr17:37983609,chr17:37983618,chr17:37983621,chr17:37983591,chr17:37983622,chr17:37983624,chr17:37983632,chr17:37983636,chr17:37983642,chr17:37983643,chr17:37983646,chr17:37983650,chr17:37983654,chr17:37983590,chr17:37983594,chr17:37983595,chr17:37983597 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Motile_Sperm-PARTIAL|8-58~|6.6e-37 none ["IKZF3:Oncogene"];["Klijn_CellLines","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","CCLE_StarF2019"];INTERCHROMOSOMAL[chr20--chr17] 9 32 9 7.96 ONLY_REF_SPLICE YES_LDAS 0.2118 GT 1.9656 AG 1.8892 ENST00000475243.6 1-58 ENST00000535189.5 491-1428 chr20|+|[0]58389460-58389517[0]<==>chr17|-|[2]39765790-39766493[1]|[0]39777651-39777767[1]|[0]39788258-39788374[1] atggcgaaggtggagcaggtcctgagcctcgagccgcagcacgagctcaaattccgagTGGAGAAACCCTACAAATGTGAGTTTTGTGGAAGGAGTTACAAGCAGAGAAGTTCCCTTGAGGAGCACAAGGAGCGCTGCCGTACATTTCTTCAGAGCACTGACCCAGGGGACACTGCAAGTGCGGAGGCAAGACACATCAAAGCAGAGATGGGAAGTGAAAGAGCTCTCGTACTGGACAGATTAGCAAGCAATGTGGCAAAACGAAAAAGCTCAATGCCTCAGAAATTCATTGGTGAGAAGCGCCACTGCTTTGATGTCAACTATAATTCAAGTTACATGTATGAGAAAGAGAGTGAGCTCATACAGACCCGCATGATGGACCAAGCCATCAATAACGCCATCAGCTATCTTGGCGCCGAAGCCCTGCGCCCCTTGGTCCAGACACCGCCTGCTCCCACCTCGGAGATGGTTCCAGTTATCAGCAGCATGTATCCCATAGCCCTCACCCGGGCTGAGATGTCAAACGGTGCCCCTCAAGAGCTGGAAAAGAAAAGCATCCACCTTCCAGAGAAGAGCGTGCCTTCTGAGAGAGGCCTCTCTCCCAACAATAGTGGCCACGACTCCACGGACACTGACAGCAACCATGAAGAACGCCAGAATCACATCTATCAGCAAAATCACATGGTCCTGTCTCGGGCCCGCAATGGGATGCCACTTCTGAAGGAGGTTCCCCGCTCTTACGAACTCCTCAAGCCCCCGCCCATCTGCCCAAGAGACTCCGTCAAAGTGATCAACAAGGAAGGGGAGGTGATGGATGTGTATCGGTGTGACCACTGCCGCGTCCTCTTCCTGGACTATGTGATGTTCACGATTCACATGGGCTGCCACGGCTTCCGTGACCCTTTCGAGTGTAACATGTGTGGATATCGAAGCCATGATCGGTATGAGTTCTCGTCTCACATAGCCAGAGGAGAACACAGAGCCCTGCTGAAGTGA MAKVEQVLSLEPQHELKFRVEKPYKCEFCGRSYKQRSSLEEHKERCRTFLQSTDPGDTASAEARHIKAEMGSERALVLDRLASNVAKRKSSMPQKFIGEKRHCFDVNYNSSYMYEKESELIQTRMMDQAINNAISYLGAEALRPLVQTPPAPTSEMVPVISSMYPIALTRAEMSNGAPQELEKKSIHLPEKSVPSERGLSPNNSGHDSTDTDSNHEERQNHIYQQNHMVLSRARNGMPLLKEVPRSYELLKPPPICPRDSVKVINKEGEVMDVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNMCGYRSHDRYEFSSHIARGEHRALLK* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE IKAROS Family Zinc Finger 3 1 Yes B-ALL, CLL, breast cancer, colorectal cancer leukaemia_lymphoma, epithelial oncogene, TSG, fusion large_deletion, missense, frameshift, nonsense, translocation 33731 ZFP64::PHACTR3 ENSG00000020256.20::ENSG00000087495.17 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2535 FALSE NA FALSE NA ZFP64 ENSG00000020256.20 protein_coding - - chr20:52051663-52204308:- chr20:52160123:- chr20:50668202-50820847:- chr20:50776662:- PHACTR3 ENSG00000087495.17 protein_coding + + chr20:59577509-59847711:+ chr20:59743107:+ chr20:58152564-58422766:+ chr20:58318162:+ chr20:52133910,chr20:52134174,chr20:52134181 chr20:59653322,chr20:59653249,chr20:59653242 NA NA chr20:50750449,chr20:50750713,chr20:50750720 chr20:58228377,chr20:58228304,chr20:58228297 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame zf-C2H2|31-51|0.0016^zf-C2H2_4|31-51|0.00031^zf-C2H2_6|31-50|0.00087^zf-C2H2_jaz|31-52|0.0043^zf-met|32-52|0.00026^zf-H2C2_2|33-41|2.8^Zap1_zf1|36-49|0.041^Med3|61-143|0.0046^zf-C2H2_4|146-169|0.094^zf-met|156-167|7^zf-H2C2_5|160-170|0.024^zf-C2H2|161-169|1.7^zf-H2C2_2|162-186|2.7e-11^zf-C2H2_11|163-168|4^IBD|168-191|0.11^BolA|169-193|2.7^zf-C2H2|175-195|5.6e-07^zf-C2H2_4|175-195|3.8e-05^zf-C2H2_6|175-197|5.2e-05^zf-C2H2_jaz|175-195|0.018^zf-C2H2_11|175-195|0.0046^zf-met|177-195|0.0064^Zap1_zf1|180-194|0.12^zf-H2C2_5|185-198|1^zf-H2C2_2|190-211|1.4e-10^zf-C2H2|203-225|2.8e-07^zf-H2C2_5|203-226|9.9e-09^zf-C2H2_4|203-225|0.00071^zf-C2H2_6|203-209|0.62^zf-C2H2_jaz|203-223|0.0094^zf-met|203-223|0.0045^zf-C2H2_11|203-224|0.017^BolA|214-246|2.5^zf-H2C2_2|217-239|9.7e-09^zf-C2H2_6|217-227|1.6^zf-C2H2|231-253|1.1e-07^zf-H2C2_5|231-253|7.5e-05^zf-C2H2_4|231-253|0.00015^zf-C2H2_6|231-236|0.86^zf-C2H2_jaz|231-252|0.0011^zf-C2H2_11|231-236|3.5^zf-met|233-253|0.51^zf-H2C2_2|246-254|0.93^zf-C2H2_6|248-254|2.9^zf-C2H2_4|299-324|0.25^zf-C2H2|306-324|2.5^zf-H2C2_5|306-325|0.048^zf-H2C2_2|307-312|6.6^zf-C2H2_jaz|309-322|3.2^zf-H2C2_2|317-341|3.1e-12^zf-C2H2_11|317-323|0.33^zf-C2H2|330-350|8.9e-07^zf-C2H2_4|330-350|0.00073^zf-C2H2_6|330-353|2.6e-05^zf-C2H2_jaz|330-350|0.015^zf-C2H2_11|330-350|0.29^zf-H2C2_5|331-352|0.11^zf-met|332-350|0.0095^Zap1_zf1|335-349|1.2^zf-H2C2_2|344-366|8.2e-09^zf-C2H2|358-380|8e-07^zf-C2H2_4|358-380|0.00081^zf-C2H2_6|358-364|1.9^zf-C2H2_jaz|358-378|0.0093^zf-C2H2_11|358-379|0.088^zf-H2C2_5|359-381|1.8e-07^zf-met|360-378|0.14^zf-H2C2_2|372-394|3.9e-09^zf-C2H2|386-408|2.5e-07^zf-H2C2_5|386-409|3.2e-05^zf-C2H2_4|386-408|0.0003^zf-C2H2_6|386-391|2.5^zf-C2H2_jaz|386-407|0.0014^zf-C2H2_11|386-391|0.53^zf-met|388-408|0.63^BolA|397-436|0.00042^zf-H2C2_2|401-424|4.7e-09^zf-C2H2_6|402-408|6.1^zf-C2H2|414-436|1e-06^zf-H2C2_5|414-438|1.8e-05^zf-C2H2_4|414-436|0.00097^zf-C2H2_6|414-436|0.65^zf-met|414-433|2^zf-C2H2_11|414-436|3e-05^zf-C2H2_jaz|415-433|0.12^Zap1_zf1|419-434|0.0042^zf-H2C2_2|429-450|1.4e-10^zf-C2H2|442-465|3.6e-05^zf-H2C2_5|442-465|4e-05^zf-C2H2_4|442-465|0.00026^zf-C2H2_jaz|442-462|0.0014^zf-met|442-464|5.2e-06^zf-C2H2_11|442-465|0.22^zf-H2C2_2|456-473|0.0033^zf-C2H2_11|466-472|0.11^zf-C2H2|467-489|0.22^zf-H2C2_5|467-487|0.038^zf-C2H2_4|467-489|0.097^zf-C2H2_jaz|467-473|1^zf-H2C2_2|487-505|0.011^zf-C2H2|496-517|5.1e-06^zf-H2C2_5|496-517|0.00013^zf-C2H2_4|496-517|0.00019^zf-C2H2_6|496-517|0.5^zf-C2H2_11|496-515|1.2^zf-C2H2_jaz|497-513|0.0059^zf-met|497-513|0.34^zf-H2C2_2|509-534|2.1e-06^zf-C2H2|523-546|0.0001^zf-H2C2_5|523-546|1.1e-07^zf-C2H2_4|523-546|0.00022^zf-C2H2_6|523-529|2.4^zf-C2H2_jaz|523-541|0.85^zf-met|524-541|1.4^zf-H2C2_2|538-547|9.8^Zap1_zf1|538-546|4.7^zf-H2C2_2|569-591|0.00034^IBD|572-603|0.0028^zf-C2H2_6|579-604|1.3e-08^zf-C2H2_11|579-598|0.041^zf-C2H2|580-602|0.00095^zf-H2C2_5|580-585|3.6^zf-C2H2_4|580-602|3.5e-05^zf-C2H2_jaz|580-599|0.32^zf-met|580-599|0.0029^Zap1_zf1|585-598|2.7^zf-H2C2_2|595-605|3 RPEL|406-421|1.3e-07^RPEL|441-462|2.9e-10^Sod_Ni|457-543|6.9e-06^RPEL|478-498|6.9e-09 ["ZFP64:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr20:7.37Mb] 9 11 9 11 ONLY_REF_SPLICE YES_LDAS 0.2498 GT 1.8892 AG 1.7968 ENST00000361387.6 1-763 ENST00000371015.6 119-1680 chr20|-|[0]52160123-52160374[1]|[0]52164695-52164757[1]|[0]52165864-52166025[1]|[0]52186832-52187071[1]|[0]52191591-52191636[0]<==>chr20|+|[1]59743107-59743268[0]|[1]59747758-59747835[0]|[1]59755182-59755364[0]|[1]59767186-59767395[0]|[1]59773279-59773453[1]|[2]59774243-59774490[0]|[1]59806041-59806194[1]|[2]59836505-59836560[0]|[1]59840369-59840430[2]|[0]59841395-59841535[2]|[0]59845189-59845265[1]|[2]59847115-59847130[2] atgaacgcgagcagcgagggcgagagcttcgcgggctcggtgcaaattccaggtggcacaacggtgctggtggagctgactcccgacatccatatctgcggcatctgcaagcagcagtttaacaacctggatgcctttgtagctcacaagcaaagtggctgccagctgacaggcacatccgcagcagcccccagcacggtccagtttgtatcggaggaaacagtgcctgccacccagactcagaccaccaccagaaccatcacctcggagacccagacaatcacagtttcagctccagaatttgtttttgaacatggctatcaaacttacctgcccacggaaagtaatgaaaaccagacagccactgtcatctctctccctgccaagtcacgcaccaaaaagcccacaacaccacctgctcagaaaaggcttaactgttgctatccaggttgccaattcaagactgcttatggcatgaaggacatggagcggcatttaaaaattcacacgggagacaaaccccataagtgtgaagtctgtggcaagtgctttagccggaaagacaagctgaaaactcacatgcggtgccacacgggcgtgaagccctacaagtgtaagacgtgtgactacgccgctgccgacagcagcagcctcaacaagcacctgaggatccactcggacgagcggcccttcaaatgccagatctgcccctacgccagccgcaactccagccagctcactgtccacctgcgatcccacacggATGAGATGGACCAAACGCCCCCGGCGCGTCCTGAATATCTGGTCTCAGGGATTCGAACTCCCCCTGTGAGGAGGAACAGCAAACTGGCCACCCTGGGCAGGATCTTCAAACCCTGGAAATGGAGGAAAAAGAAAAACGAAAAACTGAAGCAGACAACGTCAGCGCTGGAGAAGAAGATGGCCGGCAGGCAAGGCCGAGAGGAGCTCATCAAGAAGGGGCTGCTGGAGATGATGGAGCAGGATGCTGAAAGCAAAACTTGCAACCCCGATGGAGGACCCCGATCTGTACAGAGTGAACCACCCACTCCCAAGTCGGAGACGCTGACTTCAGAAGATGCCCAGCCCGGAAGCCCCTTGGCCACTGGGACGGACCAGGTCTCCCTGGACAAGCCACTGTCCTCAGCTGCCCACTTGGACGATGCAGCCAAGATGCCTTCTGCATCCAGTGGTGAAGAAGCAGACGCTGGCAGCCTCCTGCCCACCACCAATGAGCTCTCCCAAGCCTTAGCTGGGGCTGACTCCCTGGACAGTCCTCCCAGACCTCTGGAGAGATCCGTGGGCCAGCTCCCCAGCCCCCCACTGCTGCCCACTCCGCCACCCAAGGCAAGCTCCAAAACCACAAAAAATGTCACAGGCCAAGCCACACTCTTCCAAGCCTCCAGCATGAAGAGTGCCGACCCTTCCCTCCGGGGCCAGCTCTCCACACCCACGGGGTCTCCGCATCTCACCACGGTCCACCGGCCTCTTCCCCCAAGCCGCGTCATTGAGGAGCTGCACAGGGCGCTGGCCACGAAGCACCGCCAGGACAGTTTTCAAGGAAGAGAAAGTAAAGGGTCTCCAAAGAAGCGGCTGGATGTCCGTCTGTCGAGAACGTCCAGCGTGGAGCGGGGCAAGGAGAGGGAGGAGGCTTGGAGCTTTGACGGGGCATTGGAGAACAAGCGAACTGCCGCTAAGGAATCTGAGGAGAACAAGGAGAACCTGATCATAAATTCTGAACTCAAAGACGACTTGCTTTTGTATCAGGACGAGGAGGCGCTGAACGACTCCATTATTTCTGGAACACTGCCACGGAAATGCAAGAAGGAGCTCCTGGCCGTGAAGCTAAGGAACCGGCCAAGCAAACAGGAACTAGAAGACCGGAACATTTTCCCCAGAAGGACTGATGAAGAAAGACAGGAGATCCGGCAGCAGATCGAGATGAAGCTTTCCAAACGGCTGAGCCAAAGACCTGCCGTGGAAGAGCTGGAGAGAAGAAATATCTTGAAACAAAGGAATGATCAGACAGAGCAGGAAGAAAGAAGAGAAATCAAGCAAAGATTGACAAGAAAGCTTAATCAGAGACCCACTGTTGATGAATTAAGAGACAGAAAAATTCTGATACGATTCAGTGATTACGTGGAAGTAGCAAAAGCGCAGGACTATGACAGGAGGGCAGACAAACCCTGGACGAGACTGTCAGCAGCAGATAAGGCAGCAATTCGTAAAGAATTAAATGAGTACAAAAGTAATGAAATGGAGGTACATGCATCAAGCAAGCACTTGACAAGATTCCACAGGCCATAG MNASSEGESFAGSVQIPGGTTVLVELTPDIHICGICKQQFNNLDAFVAHKQSGCQLTGTSAAAPSTVQFVSEETVPATQTQTTTRTITSETQTITVSAPEFVFEHGYQTYLPTESNENQTATVISLPAKSRTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTDEMDQTPPARPEYLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKNEKLKQTTSALEKKMAGRQGREELIKKGLLEMMEQDAESKTCNPDGGPRSVQSEPPTPKSETLTSEDAQPGSPLATGTDQVSLDKPLSSAAHLDDAAKMPSASSGEEADAGSLLPTTNELSQALAGADSLDSPPRPLERSVGQLPSPPLLPTPPPKASSKTTKNVTGQATLFQASSMKSADPSLRGQLSTPTGSPHLTTVHRPLPPSRVIEELHRALATKHRQDSFQGRESKGSPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAAKESEENKENLIINSELKDDLLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIEMKLSKRLSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDELRDRKILIRFSDYVEVAKAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHASSKHLTRFHRP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33740 HEATR6-DT::HEATR6 ENSG00000267416.2::ENSG00000068097.16 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2546 FALSE NA FALSE NA HEATR6-DT ENSG00000267416.2 lncRNA + + chr17:60079309-60088713:+ chr17:60079472:+ chr17:58156670-58166074:+ chr17:58156833:+ HEATR6 ENSG00000068097.16 protein_coding - - chr17:60041008-60078922:- chr17:60059521:- chr17:58118369-58156283:- chr17:58136882:- chr17:60080724,chr17:60080715 chr17:60059656,chr17:60059665 NA NA chr17:58158085,chr17:58158076 chr17:58137017,chr17:58137026 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 5 7 5 7 ONLY_REF_SPLICE YES_LDAS 0.1499 GT 1.8892 AG 1.8892 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA TRUE hsa-mir-4737 chr17:60043025-60043105:- FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33741 TPM4::SYCE2 ENSG00000167460.17::ENSG00000161860.8 BT474 SRR8616195 SRR8639205 BREAST carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4608 TRUE 1751 TPM4 ENSG00000167460.17 protein_coding + + chr19:16067021-16103002:+ chr19:16089120:+ chr19:16177831-16213812:+ chr19:16199930:+ SYCE2 ENSG00000161860.8 protein_coding - - chr19:12898786-12919293:- chr19:12904830:- chr19:13009600-13030107:- chr19:13015644:- chr19:16089940,chr19:16090165,chr19:16089941 chr19:12914613,chr19:12914613,chr19:12914612 NA NA chr19:16200750,chr19:16200975,chr19:16200751 chr19:13025427,chr19:13025427,chr19:13025426 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["TPM4:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:3.15Mb] 5 21 5 10.01 INCL_NON_REF_SPLICE YES_LDAS 0.1875 GT 1.9656 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE tropomyosin 4 1 ALCL leukaemia_lymphoma fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33751 PEX14::PTPN14 ENSG00000142655.13::ENSG00000152104.12 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2552 FALSE NA FALSE NA PEX14 ENSG00000142655.13 protein_coding + + chr1:10472288-10630758:+ chr1:10495321:+ chr1:10532345-10690815:+ chr1:10555378:+ PTPN14 ENSG00000152104.12 protein_coding - - chr1:214348700-214552449:- chr1:214358050:- chr1:214522043-214725792:- chr1:214531393:- chr1:10504704 chr1:214362847 NA NA chr1:10564761 chr1:214536190 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Pex14_N|25-68|2.5e-20 none ["PTPN14:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:203.72Mb] 20 0 20 0 ONLY_REF_SPLICE YES_LDAS 0.2283 GT 1.8323 AG 1.8892 ENST00000356607.9 1-84 ENST00000366956.10 3436-3564 chr1|+|[0]10474967-10475002[2]|[0]10495274-10495321[2]<==>chr1|-|[2]214357922-214358050[0] atggcgtcctcggagcaggcagagcagccgagccagccaagctctactccaggaagtgaaaatgtgctgcctcgagagccgctgAAGGTGGAAGTGCCCATGATGCTGAGGCTCCTCAGGGAGCAGAGGATGTTCATGATCCAGACTATCGCTCAGTACAAGTTTGTCTACCAAGTCCTCATCCAGTTCCTCCAAAACTCCAGACTCATTTAA MASSEQAEQPSQPSSTPGSENVLPREPLKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33752 BRCA2::N4BP2L2 ENSG00000139618.18::ENSG00000244754.9 C2BBE1 SRR8616200 SRR8639203 LARGE_INTESTINE carcinoma (adenocarcinoma) primary star-fusion TRUE TRUE TRUE 2551 FALSE NA FALSE NA BRCA2 ENSG00000139618.18 protein_coding + + chr13:32315086-32400268:+ chr13:32346896:+ chr13:32889223-32974405:+ chr13:32921033:+ N4BP2L2 ENSG00000244754.9 protein_coding - - chr13:32432417-32538885:- chr13:32444126:- chr13:33006554-33113022:- chr13:33018263:- chr13:32352053 chr13:32452486 NA NA chr13:32926190 chr13:33026623 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Terminase_3C|314-346|2.5^BRCA-2_helical|488-527|3.9^BRCA-2_helical|818-896|0.12^BRCA2|1005-1033|6.2e-10^BRCA2|1216-1243|9.1e-14^BRCA2DBD_OB2|1405-1415|3.2^BRCA2|1424-1452|2.4e-12^BRCA2|1522-1548|6.9e-13^BRCA-2_OB3|1581-1606|0.71^BRCA2|1667-1695|4.3e-09^BRCA2DBD_OB2|1812-1830|2.2^BRCA2|1844-1867|0.00042^Terminase_3C|1848-1945|1.5e-07^BRCA2|1975-2002|1.9e-13^BRCA2|2055-2082|5.6e-09^BRCA-2_helical|2482-2667|6.6e-104^BRCA-2_OB1|2670-2795|1.7e-47^Tower|2831-2872|1.7e-23^BRCA2DBD_OB2|2969-3035|1.4e-36^BRCA-2_OB3|3052-3185|1.1e-57 none ["BRCA2:Oncogene","BRCA2:ArcherDX_panel","BRCA2:FoundationOne_panel"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr13:0.03Mb];LOCAL_INVERSION:+:-:[32151] 16 15 16 15 ONLY_REF_SPLICE YES_LDAS 0.354 GT 1.7819 AG 1.5301 ENST00000544455.6 1-7007 ENST00000504114.5 366-2214 chr13|+|[0]32316461-32316527[0]|[1]32319077-32319325[0]|[1]32325076-32325184[1]|[2]32326101-32326150[0]|[1]32326242-32326282[2]|[0]32326499-32326613[0]|[1]32329443-32329492[2]|[0]32330919-32331030[0]|[1]32332272-32333387[0]|[1]32336265-32341196[0]|[1]32344558-32344653[0]|[1]32346827-32346896[1]<==>chr13|-|[2]32436382-32436405[0]|[2]32438652-32438737[1]|[0]32442388-32444126[2] atgcctattggatccaaagagaggccaacattttttgaaatttttaagacacgctgcaacaaagcagatttaggaccaataagtcttaattggtttgaagaactttcttcagaagctccaccctataattctgaacctgcagaagaatctgaacataaaaacaacaattacgaaccaaacctatttaaaactccacaaaggaaaccatcttataatcagctggcttcaactccaataatattcaaagagcaagggctgactctgccgctgtaccaatctcctgtaaaagaattagataaattcaaattagacttaggaaggaatgttcccaatagtagacataaaagtcttcgcacagtgaaaactaaaatggatcaagcagatgatgtttcctgtccacttctaaattcttgtcttagtgaaagtcctgttgttctacaatgtacacatgtaacaccacaaagagataagtcagtggtatgtgggagtttgtttcatacaccaaagtttgtgaagggtcgtcagacaccaaaacatatttctgaaagtctaggagctgaggtggatcctgatatgtcttggtcaagttctttagctacaccacccacccttagttctactgtgctcatagtcagaaatgaagaagcatctgaaactgtatttcctcatgatactactgctaatgtgaaaagctatttttccaatcatgatgaaagtctgaagaaaaatgatagatttatcgcttctgtgacagacagtgaaaacacaaatcaaagagaagctgcaagtcatggatttggaaaaacatcagggaattcatttaaagtaaatagctgcaaagaccacattggaaagtcaatgccaaatgtcctagaagatgaagtatatgaaacagttgtagatacctctgaagaagatagtttttcattatgtttttctaaatgtagaacaaaaaatctacaaaaagtaagaactagcaagactaggaaaaaaattttccatgaagcaaacgctgatgaatgtgaaaaatctaaaaaccaagtgaaagaaaaatactcatttgtatctgaagtggaaccaaatgatactgatccattagattcaaatgtagcaaatcagaagccctttgagagtggaagtgacaaaatctccaaggaagttgtaccgtctttggcctgtgaatggtctcaactaaccctttcaggtctaaatggagcccagatggagaaaatacccctattgcatatttcttcatgtgaccaaaatatttcagaaaaagacctattagacacagagaacaaaagaaagaaagattttcttacttcagagaattctttgccacgtatttctagcctaccaaaatcagagaagccattaaatgaggaaacagtggtaaataagagagatgaagagcagcatcttgaatctcatacagactgcattcttgcagtaaagcaggcaatatctggaacttctccagtggcttcttcatttcagggtatcaaaaagtctatattcagaataagagaatcacctaaagagactttcaatgcaagtttttcaggtcatatgactgatccaaactttaaaaaagaaactgaagcctctgaaagtggactggaaatacatactgtttgctcacagaaggaggactccttatgtccaaatttaattgataatggaagctggccagccaccaccacacagaattctgtagctttgaagaatgcaggtttaatatccactttgaaaaagaaaacaaataagtttatttatgctatacatgatgaaacatcttataaaggaaaaaaaataccgaaagaccaaaaatcagaactaattaactgttcagcccagtttgaagcaaatgcttttgaagcaccacttacatttgcaaatgctgattcaggtttattgcattcttctgtgaaaagaagctgttcacagaatgattctgaagaaccaactttgtccttaactagctcttttgggacaattctgaggaaatgttctagaaatgaaacatgttctaataatacagtaatctctcaggatcttgattataaagaagcaaaatgtaataaggaaaaactacagttatttattaccccagaagctgattctctgtcatgcctgcaggaaggacagtgtgaaaatgatccaaaaagcaaaaaagtttcagatataaaagaagaggtcttggctgcagcatgtcacccagtacaacattcaaaagtggaatacagtgatactgactttcaatcccagaaaagtcttttatatgatcatgaaaatgccagcactcttattttaactcctacttccaaggatgttctgtcaaacctagtcatgatttctagaggcaaagaatcatacaaaatgtcagacaagctcaaaggtaacaattatgaatctgatgttgaattaaccaaaaatattcccatggaaaagaatcaagatgtatgtgctttaaatgaaaattataaaaacgttgagctgttgccacctgaaaaatacatgagagtagcatcaccttcaagaaaggtacaattcaaccaaaacacaaatctaagagtaatccaaaaaaatcaagaagaaactacttcaatttcaaaaataactgtcaatccagactctgaagaacttttctcagacaatgagaataattttgtcttccaagtagctaatgaaaggaataatcttgctttaggaaatactaaggaacttcatgaaacagacttgacttgtgtaaacgaacccattttcaagaactctaccatggttttatatggagacacaggtgataaacaagcaacccaagtgtcaattaaaaaagatttggtttatgttcttgcagaggagaacaaaaatagtgtaaagcagcatataaaaatgactctaggtcaagatttaaaatcggacatctccttgaatatagataaaataccagaaaaaaataatgattacatgaacaaatgggcaggactcttaggtccaatttcaaatcacagttttggaggtagcttcagaacagcttcaaataaggaaatcaagctctctgaacataacattaagaagagcaaaatgttcttcaaagatattgaagaacaatatcctactagtttagcttgtgttgaaattgtaaataccttggcattagataatcaaaagaaactgagcaagcctcagtcaattaatactgtatctgcacatttacagagtagtgtagttgtttctgattgtaaaaatagtcatataacccctcagatgttattttccaagcaggattttaattcaaaccataatttaacacctagccaaaaggcagaaattacagaactttctactatattagaagaatcaggaagtcagtttgaatttactcagtttagaaaaccaagctacatattgcagaagagtacatttgaagtgcctgaaaaccagatgactatcttaaagaccacttctgaggaatgcagagatgctgatcttcatgtcataatgaatgccccatcgattggtcaggtagacagcagcaagcaatttgaaggtacagttgaaattaaacggaagtttgctggcctgttgaaaaatgactgtaacaaaagtgcttctggttatttaacagatgaaaatgaagtggggtttaggggcttttattctgctcatggcacaaaactgaatgtttctactgaagctctgcaaaaagctgtgaaactgtttagtgatattgagaatattagtgaggaaacttctgcagaggtacatccaataagtttatcttcaagtaaatgtcatgattctgttgtttcaatgtttaagatagaaaatcataatgataaaactgtaagtgaaaaaaataataaatgccaactgatattacaaaataatattgaaatgactactggcacttttgttgaagaaattactgaaaattacaagagaaatactgaaaatgaagataacaaatatactgctgccagtagaaattctcataacttagaatttgatggcagtgattcaagtaaaaatgatactgtttgtattcataaagatgaaacggacttgctatttactgatcagcacaacatatgtcttaaattatctggccagtttatgaaggagggaaacactcagattaaagaagatttgtcagatttaacttttttggaagttgcgaaagctcaagaagcatgtcatggtaatacttcaaataaagaacagttaactgctactaaaacggagcaaaatataaaagattttgagacttctgatacattttttcagactgcaagtgggaaaaatattagtgtcgccaaagagtcatttaataaaattgtaaatttctttgatcagaaaccagaagaattgcataacttttccttaaattctgaattacattctgacataagaaagaacaaaatggacattctaagttatgaggaaacagacatagttaaacacaaaatactgaaagaaagtgtcccagttggtactggaaatcaactagtgaccttccagggacaacccgaacgtgatgaaaagatcaaagaacctactctattgggttttcatacagctagcgggaaaaaagttaaaattgcaaaggaatctttggacaaagtgaaaaacctttttgatgaaaaagagcaaggtactagtgaaatcaccagttttagccatcaatgggcaaagaccctaaagtacagagaggcctgtaaagaccttgaattagcatgtgagaccattgagatcacagctgccccaaagtgtaaagaaatgcagaattctctcaataatgataaaaaccttgtttctattgagactgtggtgccacctaagctcttaagtgataatttatgtagacaaactgaaaatctcaaaacatcaaaaagtatctttttgaaagttaaagtacatgaaaatgtagaaaaagaaacagcaaaaagtcctgcaacttgttacacaaatcagtccccttattcagtcattgaaaattcagccttagctttttacacaagttgtagtagaaaaacttctgtgagtcagacttcattacttgaagcaaaaaaatggcttagagaaggaatatttgatggtcaaccagaaagaataaatactgcagattatgtaggaaattatttgtatgaaaataattcaaacagtactatagctgaaaatgacaaaaatcatctctccgaaaaacaagatacttatttaagtaacagtagcatgtctaacagctattcctaccattctgatgaggtatataatgattcaggatatctctcaaaaaataaacttgattctggtattgagccagtattgaagaatgttgaagatcaaaaaaacactagtttttccaaagtaatatccaatgtaaaagatgcaaatgcatacccacaaactgtaaatgaagatatttgcgttgaggaacttgtgactagctcttcaccctgcaaaaataaaaatgcagccattaaattgtccatatctaatagtaataattttgaggtagggccacctgcatttaggatagccagtggtaaaatcgtttgtgtttcacatgaaacaattaaaaaagtgaaagacatatttacagacagtttcagtaaagtaattaaggaaaacaacgagaataaatcaaaaatttgccaaacgaaaattatggcaggttgttacgaggcattggatgattcagaggatattcttcataactctctagataatgatgaatgtagcacgcattcacataaggtttttgctgacattcagagtgaagaaattttacaacataaccaaaatatgtctggattggagaaagtttctaaaatatcaccttgtgatgttagtttggaaacttcagatatatgtaaatgtagtatagggaagcttcataagtcagtctcatctgcaaatacttgtgggatttttagcacagcaagtggaaaatctgtccaggtatcagatgcttcattacaaaacgcaagacaagtgttttctgaaatagaagatagtaccaagcaagtcttttccaaagtattgtttaaaagtaacgaacattcagaccagctcacaagagaagaaaatactgctatacgtactccagaacatttaatatcccaaaaaggcttttcatataatgtggtaaattcatctgctttctctggatttagtacagcaagtggaaagcaagtttccattttagaaagttccttacacaaagttaagggagtgttagaggaatttgatttaatcagaactgagcatagtcttcactattcacctacgtctagacaaaatgtatcaaaaatacttcctcgtgttgataagagaaacccagagcactgtgtaaactcagaaatggaaaaaacctgcagtaaagaatttaaattatcaaataacttaaatgttgaaggtggttcttcagaaaataatcactctattaaagtttctccatatctctctcaatttcaacaagacaaacaacagttggtattaggaaccaaagtgtcacttgttgagaacattcatgttttgggaaaagaacaggcttcacctaaaaacgtaaaaatggaaattggtaaaactgaaactttttctgatgttcctgtgaaaacaaatatagaagtttgttctacttactccaaagattcagaaaactactttgaaacagaagcagtagaaattgctaaagcttttatggaagatgatgaactgacagattctaaactgccaagtcatgccacacattctctttttacatgtcccgaaaatgaggaaatggttttgtcaaattcaagaattggaaaaagaagaggagagccccttatcttagtgggagaaccctcaatcaaaagaaacttattaaatgaatttgacaggataatagaaaatcaagaaaaatccttaaaggcttcaaaaagcactccagatggcacaataaaagatcgaagattgtttatgcatcatgtttctttagagccgattacctgtgtaccctttcgAGAAAGAGTTTTGAAGAAAACTGGGCATAGGCTCAGCAAAACCAAACAGAAGAGGAACAGAAAAAGAAACAAAAAGCAGAACAGTCAGAATAGAATCATGGAGGAAAACTCATTAGAATTCTTAAGTGATCTTACACCGGGAGATCAGGACCCATCTCAGAGTGAAGAGGAAGACATTGAAAAGACCAGAAGAGAATCAGAATATCCCTTCATTGATGGTCTACAAAATGAAGTCGGAGATTTTGTGACTGGATATAAAGAAAAAAGATGGAAAAATAAAGATCCTAAAGACAGTTTCCAAAACGTTATGTCTATAGTTGAATTAGACAACACACCAAAGAATTACCTCTCTAAGGAAGGTGATAACTTGTTTGTAAGTTTGTTACTGAGGCCAAATGAAATCTCCGTTACTTGTCCAATACTGACTCAAAACCTTTCCTGTGTAACAACTGATGACTGCTCTGGCATGAAGGTAGAAAAGCATATTAGAAATAGGCATACCATAGCATTAGACACCCAGGACCTTTCTGCGGAAACTTCATGCTTATTTATGAAGAAGAGAGAAATAGTAGATAAAAATCTCTCACATGAACCCATTCTGTGCCATCAACATGGAATCAGAATGTCAGATAAAGTTTTAAGAGAGGAACAAGTGTATACAACTAAAATCAATCACTGGGCTTTTTTCACAACCAATTTATCTGATGAAGATTTACAGCTGGGCTCTGACAGACAGCCCTATTTTGGTAGCTGGCCTGCAGGACCTCATAAGTTTATATGTGAACAGAGACCAAAGAAAGATAGAGCATGTAAGTTGGCTGGTCCTGACAGCAGGGGGCAATGGATTCAAATGATCTTCACTTCGGTGGCAGCATCAGAACCAGGAAACAATCCAGAAATATTGACAGACAAACTACTGATAGGAAATGAAGATTTTTCACCTCCACCTGAAACTATGGATTCATTCATAGAAACAAACCTCTTCAGAAGCTGCTTACCTCAACCGGATATACCAAAGAATGCCTTAGAATCAACAAAAAATAAGAAAAGGAGGAAGAAAAGGATTTTCAATTTGGTACCAAATTTTGACTTATTAGGACAGAGTCGTATCGGTGTAAAAGAAAGGGAGAAATGTGACCTGTTAACAAAAAACCATGGACTAAAAATTACTTTGGGAGAAGAAAAAGATAGAATTTCAGAAAGGAACAGTGAAGAGGAGAATAAACAAAAACTTATGACCTTTGATCATCATCCATTGTGGTTTTACCTTGATATTATCAAAGCTACCCCTTTAAATATTGATGGACAGCGTTATTCTCATTGCCTGTCATTTAACAGACTAAGGTGCTCTGCATCTTTATACAAAAATTATATTCCTTCTTTTGTGCTACATAATTTATCTAGTATTTGGAAGCCATCTTTTACAAACAAGAAACTGTTTTTGACTTTCGAATCTCAGACAAGAGTAGGTAATAAACTAAATGATGCAGGGTTTATTTCTCCAGAAATTTTACATAGTCATCCTGATACTTCGTGCTCTTTGGGAGTCACTTCTGATTTTCACTTTTTAAATGAAAGGTTTGATAGAAAGCTGAAAAGATGGGAAGAACCTAAGGAATTACCAGCTGAGGACAGCCAAGACTTAACAAGCACTGACTACCGTTCCCTTGAGCTACCATTATCACAAGGGTTTGCCTTTCAATTAGTAAAGCTTTTTGGATCTCCAGGCGTTCCAATGGAATCCTTGTTGCCTGATGACTATGTGGTTCCCCTTGACTGGAAGACACTAAAGATGATCTACTTGCAATGGAAGATGTCAGTGGAGAAAAGACAGAAGAAGATTGGTTGA MPIGSKERPTFFEIFKTRCNKADLGPISLNWFEELSSEAPPYNSEPAEESEHKNNNYEPNLFKTPQRKPSYNQLASTPIIFKEQGLTLPLYQSPVKELDKFKLDLGRNVPNSRHKSLRTVKTKMDQADDVSCPLLNSCLSESPVVLQCTHVTPQRDKSVVCGSLFHTPKFVKGRQTPKHISESLGAEVDPDMSWSSSLATPPTLSSTVLIVRNEEASETVFPHDTTANVKSYFSNHDESLKKNDRFIASVTDSENTNQREAASHGFGKTSGNSFKVNSCKDHIGKSMPNVLEDEVYETVVDTSEEDSFSLCFSKCRTKNLQKVRTSKTRKKIFHEANADECEKSKNQVKEKYSFVSEVEPNDTDPLDSNVANQKPFESGSDKISKEVVPSLACEWSQLTLSGLNGAQMEKIPLLHISSCDQNISEKDLLDTENKRKKDFLTSENSLPRISSLPKSEKPLNEETVVNKRDEEQHLESHTDCILAVKQAISGTSPVASSFQGIKKSIFRIRESPKETFNASFSGHMTDPNFKKETEASESGLEIHTVCSQKEDSLCPNLIDNGSWPATTTQNSVALKNAGLISTLKKKTNKFIYAIHDETSYKGKKIPKDQKSELINCSAQFEANAFEAPLTFANADSGLLHSSVKRSCSQNDSEEPTLSLTSSFGTILRKCSRNETCSNNTVISQDLDYKEAKCNKEKLQLFITPEADSLSCLQEGQCENDPKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHENASTLILTPTSKDVLSNLVMISRGKESYKMSDKLKGNNYESDVELTKNIPMEKNQDVCALNENYKNVELLPPEKYMRVASPSRKVQFNQNTNLRVIQKNQEETTSISKITVNPDSEELFSDNENNFVFQVANERNNLALGNTKELHETDLTCVNEPIFKNSTMVLYGDTGDKQATQVSIKKDLVYVLAEENKNSVKQHIKMTLGQDLKSDISLNIDKIPEKNNDYMNKWAGLLGPISNHSFGGSFRTASNKEIKLSEHNIKKSKMFFKDIEEQYPTSLACVEIVNTLALDNQKKLSKPQSINTVSAHLQSSVVVSDCKNSHITPQMLFSKQDFNSNHNLTPSQKAEITELSTILEESGSQFEFTQFRKPSYILQKSTFEVPENQMTILKTTSEECRDADLHVIMNAPSIGQVDSSKQFEGTVEIKRKFAGLLKNDCNKSASGYLTDENEVGFRGFYSAHGTKLNVSTEALQKAVKLFSDIENISEETSAEVHPISLSSSKCHDSVVSMFKIENHNDKTVSEKNNKCQLILQNNIEMTTGTFVEEITENYKRNTENEDNKYTAASRNSHNLEFDGSDSSKNDTVCIHKDETDLLFTDQHNICLKLSGQFMKEGNTQIKEDLSDLTFLEVAKAQEACHGNTSNKEQLTATKTEQNIKDFETSDTFFQTASGKNISVAKESFNKIVNFFDQKPEELHNFSLNSELHSDIRKNKMDILSYEETDIVKHKILKESVPVGTGNQLVTFQGQPERDEKIKEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDLELACETIEITAAPKCKEMQNSLNNDKNLVSIETVVPPKLLSDNLCRQTENLKTSKSIFLKVKVHENVEKETAKSPATCYTNQSPYSVIENSALAFYTSCSRKTSVSQTSLLEAKKWLREGIFDGQPERINTADYVGNYLYENNSNSTIAENDKNHLSEKQDTYLSNSSMSNSYSYHSDEVYNDSGYLSKNKLDSGIEPVLKNVEDQKNTSFSKVISNVKDANAYPQTVNEDICVEELVTSSSPCKNKNAAIKLSISNSNNFEVGPPAFRIASGKIVCVSHETIKKVKDIFTDSFSKVIKENNENKSKICQTKIMAGCYEALDDSEDILHNSLDNDECSTHSHKVFADIQSEEILQHNQNMSGLEKVSKISPCDVSLETSDICKCSIGKLHKSVSSANTCGIFSTASGKSVQVSDASLQNARQVFSEIEDSTKQVFSKVLFKSNEHSDQLTREENTAIRTPEHLISQKGFSYNVVNSSAFSGFSTASGKQVSILESSLHKVKGVLEEFDLIRTEHSLHYSPTSRQNVSKILPRVDKRNPEHCVNSEMEKTCSKEFKLSNNLNVEGGSSENNHSIKVSPYLSQFQQDKQQLVLGTKVSLVENIHVLGKEQASPKNVKMEIGKTETFSDVPVKTNIEVCSTYSKDSENYFETEAVEIAKAFMEDDELTDSKLPSHATHSLFTCPENEEMVLSNSRIGKRRGEPLILVGEPSIKRNLLNEFDRIIENQEKSLKASKSTPDGTIKDRRLFMHHVSLEPITCVPFRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVMSIVELDNTPKNYLSKEGDNLFVSLLLRPNEISVTCPILTQNLSCVTTDDCSGMKVEKHIRNRHTIALDTQDLSAETSCLFMKKREIVDKNLSHEPILCHQHGIRMSDKVLREEQVYTTKINHWAFFTTNLSDEDLQLGSDRQPYFGSWPAGPHKFICEQRPKKDRACKLAGPDSRGQWIQMIFTSVAASEPGNNPEILTDKLLIGNEDFSPPPETMDSFIETNLFRSCLPQPDIPKNALESTKNKKRRKKRIFNLVPNFDLLGQSRIGVKEREKCDLLTKNHGLKITLGEEKDRISERNSEEENKQKLMTFDHHPLWFYLDIIKATPLNIDGQRYSHCLSFNRLRCSASLYKNYIPSFVLHNLSSIWKPSFTNKKLFLTFESQTRVGNKLNDAGFISPEILHSHPDTSCSLGVTSDFHFLNERFDRKLKRWEEPKELPAEDSQDLTSTDYRSLELPLSQGFAFQLVKLFGSPGVPMESLLPDDYVVPLDWKTLKMIYLQWKMSVEKRQKKIG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE familial breast/ovarian cancer gene 2 1 Yes breast, ovarian, pancreatic breast, ovarian, pancreatic, leukaemia (FANCB, FANCD1) hereditary breast/ovarian cancer leukaemia_lymphoma, epithelial TSG large_deletion, missense, nonsense, frameshift, splice_site FALSE NA NA NA NA NA NA NA NA NA 33760 VTI1A::TECTB ENSG00000151532.15::ENSG00000119913.6 HPAC SRR8616212 SRR8639156 PANCREAS carcinoma (ductal_carcinoma) primary star-fusion TRUE TRUE TRUE 2553 FALSE NA FALSE NA VTI1A ENSG00000151532.15 protein_coding + + chr10:112446998-112818744:+ chr10:112447467:+ chr10:114206756-114578503:+ chr10:114207225:+ TECTB ENSG00000119913.6 protein_coding + + chr10:112283400-112305038:+ chr10:112293738:+ chr10:114043158-114064796:+ chr10:114053496:+ chr10:112447674,chr10:112447670 chr10:112293522,chr10:112293515 NA NA chr10:114207432,chr10:114207428 chr10:114053280,chr10:114053273 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame V-SNARE|12-90|7.9e-29^Mer2|12-62|0.00043^DUF6730|15-55|0.31^MetOD2|20-58|0.0022^FapA|30-89|0.00031^Sec20|34-54|0.83^DUF745|34-57|0.0017^Exonuc_VII_L-PARTIAL|34-94~|0.00078^DUF1664|35-86|0.00036^V-SNARE_C|36-56|1^Laminin_II|36-84|0.032^Sec8_N|36-61|0.055^PCRF|36-89|0.007^Spc7|37-81|0.0071^DUF5344|39-89|0.00041^DegQ|42-61|0.00071^Mer2-PARTIAL|73-94~|0.02^DegQ|77-89|3.5^DUF6730-PARTIAL|77-94~|0.57 none ["VTI1A:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr10:0.14Mb] 7 11 7 11 ONLY_REF_SPLICE YES_LDAS 0.2206 GT 1.7232 AG 1.9329 ENST00000432306.5 1-94 ENST00000643850.1 514-1029 chr10|+|[0]112447374-112447467[0]<==>chr10|+|[0]112293738-112293841[1]|[2]112293978-112294061[1]|[2]112298069-112298231[2]|[0]112299492-112299564[0]|[1]112302101-112302133[0]|[1]112302258-112302316[2] atgtcgtccgacttcgaaggttacgagcaggacttcgcggtgctcactgcagagatcaccagcaagattgcgagggtcccacgactcccgcctgAATGCCAAGTTCTCCATCAAGAAAGAAGCTCCCTTTGTCCTGGAGGCATCCGAAATCGGTTCAGATCTGTTTGCAGGAGTGGAAGCCAAAGGGTTAAGCATTAGGTTTAAAGTGGTCTTGAACAGCTGTTGGGCCACCCCCTCGGCTGACTTCATGTATCCCTTGCAGTGGCAGCTGATCAACAAGGGCTGCCCCACGGATGAAACCGTCCTCGTGCATGAGAATGGGAGAGATCACAGGGCAACCTTCCAATTCAATGCTTTCCGGTTCCAGAACATCCCCAAACTCTCCAAGGTGTGGTTACACTGTGAGACGTTCATCTGCGACAGTGAGAAACTCTCCTGCCCAGTGACCTGCGATAAACGGAAGCGCCTCCTGCGAGACCAGACCGGGGGAGTCCTGGTCGTGGAGCTCTCCCTGCGGAGCAGGGGATTTTCCAGTCTCTATAGCTTCTCAGCACACCTGAGTGGCGCAGAGGGGGCGAGATCAAGAGGTCTCCCTCTGACCAGCCCCTGA MSSDFEGYEQDFAVLTAEITSKIARVPRLPPECQVLHQERSSLCPGGIRNRFRSVCRSGSQRVKH*V*SGLEQLLGHPLG*LHVSLAVAADQQGLPHG*NRPRA*EWERSQGNLPIQCFPVPEHPQTLQGVVTL*DVHLRQ*ETLLPSDLR*TEAPPARPDRGSPGRGALPAEQGIFQSL*LLSTPEWRRGGEIKRSPSDQPL FALSE FALSE NA NA TRUE hsa-mir-6715a chr10:112299612-112299690:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE vesicle transport through interaction with t-SNAREs homolog 1A 2 colorectal epithelial fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33763 TUBD1::VMP1 ENSG00000108423.15::ENSG00000062716.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2554 FALSE NA FALSE NA TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59863664:- chr17:57936840-57970306:- chr17:57941025:- VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59839768:+ chr17:57784553-57919616:+ chr17:57917129:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Tubulin|2-213|1.4e-58^Tubulin_2|131-167|1e-07 none ["DEEPEST2019","TumorFusionsNAR2018","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.02Mb];LOCAL_INVERSION:-:+:[17227] 99 129 99 129 ONLY_REF_SPLICE YES_LDAS 3.1775 GT 1.7968 AG 1.7819 ENST00000325752.8 1-1259 ENST00000262291.9 1078-1221 chr17|-|[1]59863664-59863847[1]|[0]59866609-59866749[1]|[0]59874539-59874703[1]|[0]59878103-59878334[0]|[2]59880894-59881110[2]|[1]59886083-59886230[1]|[0]59890831-59891002[0]<==>chr17|+|[0]59839768-59839911[2] atgtcaattgtaacagtgcaacttggtcagtgtggcaatcagattggttttgaagtttttgatgctttgcttagtgactcacacagttcccagggactctgctctatgagagagaatgaggcatatcaagcatcttgcaaagaaagattcttcagtgaggaggagaatggagttccaattgcccgggctgttcttgttgacatggaacccaaagttatcaatcaaatgctgtcaaaggctgcccagtctggccaatggaaatatggtcaacatgcatgcttctgtcaaaaacaaggttctggaaacaactgggcatatggttactctgttcatggacccaggcatgaagaatctataatgaacataatccggaaggaagtggagaaatgtgactctttcagtggttttttcatcataatgagtatggctgggggcacaggatcaggattaggagctttcgttacacagaatttagaagatcagtactcaaactcattgaaaatgaatcagattatttggccttatggaactggtgaggttattgttcaaaactacaactccattttgacactttctcacttgtaccgatcttcagacgccctccttcttcatgagaatgatgccatccataagatctgtgcaaaactgatgaatatcaagcagatctcctttagtgatatcaatcaagtcctcgcacatcagctgggaagtgtgttccagcctacttattctgcagaaagctcatttcactacagacgaaatccactaggagacttaatggagcatttagttccccatcctgaattcaagatgctgagtgttcgtaacattcctcacatgtctgagaattcattggcatacaccacatttacttgggctggcctcctcaagcatttgagacagatgctcatttctaatgcaaagatggaagaaggtattgataggcatgtatggcctcctttatcaggacttcctcctcttagtaaaatgtctctcaacaaggacctgcattttaacacttccattgctaacttggtcattcttcgtgggaaagatgtgcaaagtgcagatgtggagggatttaaagatccagctctgtatacttcctggttgaagcctgttaatgctttcaacgtgtggaaaacccagcgggcctttagcaaatatgagaagtctgcagtgttggtcagcaacagccagttcttagtaaaaccacttgatatgattgttgggaaggcatggaatatgtttgcttcaaaGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKEKTGCPGCLKSWSLSWCVTSSYLSLTPWHKVMPNESSSG*TQRRKLN FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Lung no_match TRUE Lung adenocarcinoma,Liver hepatocellular carcinoma LUNG,LIVER no_match 57941025|57941025|57941025,57963444|57970058 TRUE|TRUE|TRUE,FALSE|FALSE 57816198|57814814|57842332,57851115|57851115 FALSE|FALSE|FALSE,FALSE|FALSE PARTIALLY,PARTIALLY Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33764 RFWD3::MLKL ENSG00000168411.14::ENSG00000168404.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2556 FALSE NA FALSE NA RFWD3 ENSG00000168411.14 protein_coding - - chr16:74621399-74666877:- chr16:74666786:- chr16:74655297-74700775:- chr16:74700684:- MLKL ENSG00000168404.13 protein_coding - - chr16:74671855-74700960:- chr16:74685583:- chr16:74705753-74734858:- chr16:74719481:- chr16:74665966 chr16:74686832 NA NA chr16:74699864 chr16:74720730 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:0.00Mb];LOCAL_REARRANGEMENT:-:[4974] 94 0 94 0 ONLY_REF_SPLICE YES_LDAS 1.31 GT 1.8256 AG 1.8323 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Mixed lineage kinase domain-like protein TKL TKL-Unique Q8NB16 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE ring finger and WD repeat domain 3 2 lung cancer Fanconi anemia W epithelial TSG large_deletion FALSE NA NA NA NA NA NA NA NA NA 33766 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2557 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53683874:- chrX:53559057-53713697:- chrX:53710819:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:41.87Mb] 32 90 32 83.86 ONLY_REF_SPLICE YES_LDAS 1.6147 GT 1.6402 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33769 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2558 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53686270:- chrX:53559057-53713697:- chrX:53713215:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:41.87Mb] 22 19 22 3.01 ONLY_REF_SPLICE YES_LDAS 0.3485 GT 1.6402 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33771 KRT8::RAB6A ENSG00000170421.13::ENSG00000175582.20 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA KRT8 ENSG00000170421.13 protein_coding - - chr12:52897187-52949954:- chr12:52949456:- chr12:53290971-53343738:- chr12:53343240:- RAB6A ENSG00000175582.20 protein_coding - - chr11:73675638-73761137:- chr11:73679720:- chr11:73386683-73472182:- chr11:73390765:- chr12:52949120,chr12:52949122,chr12:52949122 chr11:73690907,chr11:73690894,chr11:73690906 NA NA chr12:53342904,chr12:53342906,chr12:53342906 chr11:73401952,chr11:73401939,chr11:73401951 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Keratin_2_head-PARTIAL|54-74~|0.025^Keratin_2_head-PARTIAL|66-74~|1.9e-13 none ["CCLE_StarF2019"];INTERCHROMOSOMAL[chr12--chr11] 19 8 16.47 8 ONLY_REF_SPLICE YES_LDAS 0.341 GT 1.7968 AG 1.8892 ENST00000548998.5 1-74 ENST00000310653.10 496-627 chr12|-|[1]52949456-52949517[0]|[2]52949715-52949726[0]<==>chr11|-|[2]73677898-73677962[1]|[0]73679654-73679720[0] atggaaatccagtgctcccggattttgctctccagcctccggttctcggtctccaggctcctcactctgtccagCTCTTTCGACGTGTAGCAGCAGCTTTGCCGGGAATGGAAAGCACACAGGACAGAAGCAGAGAAGATATGATTGACATAAAACTGGAAAAGCCTCAGGAGCAACCAGTCAGTGAAGGAGGCTGTTCCTGCTAA MEIQCSRILLSSLRFSVSRLLTLSSSFDV*QQLCREWKAHRTEAEKI*LT*NWKSLRSNQSVKEAVPA FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33773 DIAPH3::ELAPOR2 ENSG00000139734.19::ENSG00000164659.15 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2561 FALSE NA FALSE NA DIAPH3 ENSG00000139734.19 protein_coding - - chr13:59665583-60163928:- chr13:60093628:- chr13:60239717-60738062:- chr13:60667762:- ELAPOR2 ENSG00000164659.15 protein_coding - - chr7:86876906-87059654:- chr7:86965024:- chr7:86506222-86688970:- chr7:86594340:- NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FH2|87-133|0.86^Drf_FH3|106-160|0.95^Drf_GBD|116-297|2.1e-59^Drf_FH3|303-487|1.8e-61^DUF6261|391-420|0.25^XH|393-431|1.5^DUF2730|397-417|0.78^FH2-PARTIAL|431-495~|0.048^DUF2730-PARTIAL|480-495~|0.033^XH-PARTIAL|486-495~|2.2e-05 Ephrin_rec_like|287-317|7.3e-08^NCD3G|289-316|3.5e-07^Ephrin_rec_like|314-350|3.7e-05^NCD3G|322-342|0.021^Ephrin_rec_like|391-420|3.4e-06^NCD3G|397-433|6.7e-05^Ephrin_rec_like|416-432|0.00031^NCD3G|520-525|2^Ephrin_rec_like|602-626|0.0028^NCD3G|617-642|4.5e-06^Ephrin_rec_like|624-674|2.6e-08^NCD3G|656-681|0.016^Ephrin_rec_like|868-888|0.79 none 19 25 19 25 ONLY_REF_SPLICE YES_LDAS 0.6132 GT 1.9329 AG 1.7056 ENST00000267215.8 1-495 ENST00000450689.7 190-3090 chr13|-|[2]60093628-60093732[0]|[2]60112010-60112186[0]|[2]60132957-60132989[0]|[2]60163587-60163766[0]<==>chr7|-|[2]86880471-86880530[0]|[2]86891724-86891889[2]|[1]86892922-86893100[0]|[2]86897506-86897632[2]|[1]86907670-86907771[2]|[1]86908447-86908543[1]|[0]86909812-86910001[0]|[2]86912072-86912245[0]|[2]86912941-86913204[0]|[2]86914723-86914860[0]|[2]86918442-86918544[2]|[1]86919220-86919310[1]|[0]86925528-86925656[1]|[0]86926736-86926916[0]|[2]86938126-86938214[1]|[0]86938808-86938960[1]|[0]86940010-86940115[0]|[2]86942018-86942104[0]|[2]86944899-86945046[2]|[1]86947727-86947922[1]|[0]86964904-86965024[0] atggaacggcaccagccgcggctgcaccacccggcccaaggctcagccgctgggactccctacccttcctcagcctctctccgcggctgccgggaaagcaagatgccgcgcaggaagggcccccaacaccctccgccgcccagtggccccgaggagcctggggagaagcgccccaagtttcatttaaatattaggacactgacggatgatatgctggacaaatttgccagcataagaattccagggagcaagaaagagagacctccacttcccaacctgaagactgcatttgcaagcagtgattgctcagcagcacctttagagatgatggagaactttccaaagccactgtcagagaatgaactcttagaactttttgaaaaaatgatggaagatatgaatttaaatgaagataaaaaggcaccattgcgggaaaaggacttcagtatcaaaaaagaaatggtgatgcagtacattaatactgcttctaagacaAAAGATTATCACTTTGAATATACGGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCAAATTCTGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTATTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCTAACATCGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGACGGCTGTAACAACTCTTCTTGGATCCCTCGTGGAAACTACATAGAATCTAATCGTGATGACTGCACGGTGTCTTTGATCTATGCTGTGCACCTTAAGAAGTCAGGCTATGTCTTCTTTGAGTACCAGTATGTCGACAACAACATCTTCTTTGAGTTCTTTATTCAAAATGATCAGTGCCAGGAGATGGACACCACCACTGACAAGTGGGTAAAACTTACAGACAATGGAGAATGGGGCTCTCATTCTGTAATGCTGAAATCAGGCACAAACATACTCTACTGGAGAACTACAGGCATCCTTATGGGTTCTAAGGCGGTCAAGCCTGTGCTGGTAAAAAATATCACAATTGAAGGGGTGGCGTACACATCAGAATGTTTTCCTTGCAAGCCAGGCACATTCAGCAACAAACCAGGTTCATTCAACTGCCAGGTGTGTCCCAGAAACACCTATTCTGAGAAAGGAGCCAAAGAATGTATAAGGTGTAAAGACGACTCTCAATTTTCAGAGGAAGGATCCAGTGAGTGTACAGAGCGCCCTCCCTGTACCACAAAAGACTATTTCCAGATCCATACTCCATGTGATGAAGAAGGAAAGACACAGATAATGTACAAGTGGATAGAGCCCAAAATCTGCCGGGAGGATCTCACAGATGCTATTAGATTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCGCCTTGCAACCCTGGATTTTATAACAATGGATCATCTTCTTGCCATCCCTGTCCTCCTGGAACATTTTCAGATGGAACCAAAGAATGTAGACCATGTCCAGCAGGAACGGAGCCTGCACTTGGCTTTGAATATAAATGGTGGAATGTCCTTCCTGGCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCAAAGTGCGATGGAATGAATGGTTGGGAGGTGGCTGGAGATCATATCCAGAGTGGGGCTGGAGGTTCTGACAATGATTACCTGATCTTAAACTTGCATATCCCAGGATTTAAACCACCAACATCTATGACTGGAGCCACGGGTTCTGAACTAGGAAGAATAACATTTGTCTTTGAGACCCTCTGTTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATTAATAGAAAAAGTACAAATGTGGTAGAATCGTGGGGTGGAACCAAAGAAAAACAAGCTTACACCCATATCATCTTCAAGAATGCAACTTTTACATTTACATGGGCATTCCAGAGAACTAATCAGGGTCAAGATAATAGACGGTTCATCAATGACATGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTGGCGTCCTCATGCCGTGCCTGTGCCCTCGGTTCTGAACAGTCGGGTTCATCGTGTGTCCCCTGCCCTCCAGGCCACTACATTGAGAAAGAAACCAACCAGTGCAAGGAATGTCCACCTGACACCTACCTGTCCATACATCAGGTCTATGGCAAAGAGGCTTGTATTCCATGCGGGCCTGGGAGTAAAAACAATCAGGACCATTCGGTTTGCTATAGTGACTGCTTTTTCTACCATGAAAAAGAAAATCAGAGTTTGCACTATGACTTTAGCAACCTCAGCAGTGTGGGCTCATTAATGAATGGCCCCAGCTTCACCTCCAAAGGAACAAAATACTTCCATTTCTTCAATATCAGTTTATGTGGGCATGAGGGGAAGAAGATGGCTCTCTGTACCAACAATATAACAGACTTTACAGTAAAAGAAATAGTGGCAGGGTCAGATGATTACACAAATTTGGTAGGGGCATTTGTATGCCAGTCAACAATTATTCCTTCTGAAAGTAAGGGTTTCCGAGCAGCCTTATCATCACAATCCATCATTCTGGCAGATACATTCATAGGAGTCACAGTTGAAACCACATTGAAAAATATTAATATAAAAGAAGATATGTTCCCAGTTCCAACAAGCCAAATACCAGATGTGCATTTCTTTTATAAGTCTTCTACAGCAACAACATCTTGTATTAATGGCCGATCAACTGCTGTGAAAATGAGGTGTAATCCTACTAAATCTGGAGCAGGAGTGATTTCAGTCCCCAGCAAGTGCCCAGCAGGTACCTGTGATGGGTGTACGTTCTATTTCCTGTGGGAGAGTGCTGAAGCTTGCCCTCTGTGTACGGAGCATGACTTCCATGAGATTGAGGGAGCCTGCAAGAGAGGATTTCAGGAAACCTTGTATGTGTGGAATGAACCTAAATGGTGCATTAAAGGAATTTCTTTGCCTGAGAAAAAGTTGGCAACCTGTGAAACGGTTGACTTTTGGCTGAAGGTGGGAGCCGGTGTGGGAGCTTTTACTGCCGTTTTGCTGGTGGCTCTGACCTGCTACTTCTGGAAAAAGAATCAAAAACTGGAATACAAATATTCCAAGTTAGTAATGACGACTAACTCAAAAGAGTGTGAACTCCCGGCTGCAGACAGTTGTGCTATCATGGAAGGAGAAGATAATGAAGAGGAAGTTGTATATTCCAATAAACAGTCACTACTAGGAAAACTCAAATCTTTGGCAACCAAGGAAAAAGAAGACCATTTTGAATCTGTTCAACTGAAAACCTCAAGATCCCCAAATATATGA MERHQPRLHHPAQGSAAGTPYPSSASLRGCRESKMPRRKGPQHPPPPSGPEEPGEKRPKFHLNIRTLTDDMLDKFASIRIPGSKKERPPLPNLKTAFASSDCSAAPLEMMENFPKPLSENELLELFEKMMEDMNLNEDKKAPLREKDFSIKKEMVMQYINTASKTKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPAGFSNIATFMDTVVGPSDSRPDGCNNSSWIPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQCQEMDTTTDKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSNKPGSFNCQVCPRNTYSEKGAKECIRCKDDSQFSEEGSSECTERPPCTTKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFYNNGSSSCHPCPPGTFSDGTKECRPCPAGTEPALGFEYKWWNVLPGNMKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGATGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHIIFKNATFTFTWAFQRTNQGQDNRRFINDMVKIYSITATNAVDGVASSCRACALGSEQSGSSCVPCPPGHYIEKETNQCKECPPDTYLSIHQVYGKEACIPCGPGSKNNQDHSVCYSDCFFYHEKENQSLHYDFSNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGKKMALCTNNITDFTVKEIVAGSDDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADTFIGVTVETTLKNINIKEDMFPVPTSQIPDVHFFYKSSTATTSCINGRSTAVKMRCNPTKSGAGVISVPSKCPAGTCDGCTFYFLWESAEACPLCTEHDFHEIEGACKRGFQETLYVWNEPKWCIKGISLPEKKLATCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCAIMEGEDNEEEVVYSNKQSLLGKLKSLATKEKEDHFESVQLKTSRSPNI* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33774 ENSG00000279539::GSK3A ENSG00000279539.1::ENSG00000105723.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2567 TRUE 4903 TRUE 1802 ENSG00000279539 ENSG00000279539.1 TEC + + chr19:42242775-42244973:+ chr19:42243395:+ chr19:42746927-42749125:+ chr19:42747547:+ GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42236941:- chr19:42730377-42746777:- chr19:42741093:- chr19:42244086,chr19:42244084 chr19:42239557,chr19:42239559 NA NA chr19:42748238,chr19:42748236 chr19:42743709,chr19:42743711 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 18 0 18 0 INCL_NON_REF_SPLICE YES_LDAS 0.2509 GT 1.8323 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33775 HINT3::NCOA7 ENSG00000111911.7::ENSG00000111912.20 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2562 FALSE NA FALSE NA HINT3 ENSG00000111911.7 protein_coding + + chr6:125956770-125980244:+ chr6:125967004:+ chr6:126277916-126301390:+ chr6:126288150:+ NCOA7 ENSG00000111912.20 protein_coding + + chr6:125781161-125932034:+ chr6:125928174:+ chr6:126102307-126253180:+ chr6:126249320:+ chr6:125968973,chr6:125968970 chr6:125927686,chr6:125927680 NA NA chr6:126290119,chr6:126290116 chr6:126248832,chr6:126248826 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DcpS_C|48-157|4.5e-38^HIT|66-150|9.9e-13 none ["Klijn_CellLines","DEEPEST2019","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.02Mb];LOCAL_REARRANGEMENT:+:[24751] 18 10 18 10 ONLY_REF_SPLICE YES_LDAS 0.3903 GT 1.8892 AG 1.7819 ENST00000229633.7 1-319 ENST00000368357.7 2620-2829 chr6|+|[0]125956978-125957178[2]|[0]125966887-125967004[0]<==>chr6|+|[0]125928174-125928247[1]|[2]125928636-125928771[2] atggcggaggaacaggtgaaccgcagcgccggcctggcccccgactgtgaggcctcggcgactgcagaaactacggtttcctcagtggggacctgtgaagccgctggcaagtcaccagagcccaaggactacgacagcacctgcgtgttctgccggatcgcggggcggcaggacccgggcaccgaactcctgcactgcgagaatgaggacctaatttgcttcaaagatatcaaaccagcagcaactcatcattatcttgtggtgccaaagaagcatattggaaactgcagaactctaaggaaagatcaagtagaactggGTCTTTAAGTGGAGTGGAGAAAATTCATACTTTATCAATGGAGACATAAGTTCTTTAGAACTTGGTGGTGGAGGGGGACGATTTGGTTTATGGCTAGATGCTGATTTATACCACGGACGAAGCAACTCTTGCAGCACTTTCAATAATGATATTCTTTCCAAAAAGGAAGACTTCATAGTTCAGGATCTGGAGGTGTGGGCATTTGATTGA MAEEQVNRSAGLAPDCEASATAETTVSSVGTCEAAGKSPEPKDYDSTCVFCRIAGRQDPGTELLHCENEDLICFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELGL*VEWRKFILYQWRHKFFRTWWWRGTIWFMARC*FIPRTKQLLQHFQ**YSFQKGRLHSSGSGGVGI*L FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33776 SLX9::MIR924HG ENSG00000160256.14::ENSG00000267374.3 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA SLX9 ENSG00000160256.14 protein_coding + + chr21:44940025-44976973:+ chr21:44973265:+ chr21:46359940-46396888:+ chr21:46393180:+ MIR924HG ENSG00000267374.3 lncRNA - - chr18:39206917-39800322:- chr18:39388527:- chr18:36786881-37380286:- chr18:36968491:- chr21:44974446,chr21:44974444 chr18:39455921,chr18:39455923 NA NA chr21:46394361,chr21:46394359 chr18:37035885,chr18:37035887 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 17 24 17 23.54 ONLY_REF_SPLICE YES_LDAS 0.565 GT 1.9899 AG 1.8062 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33781 MICALL1::EIF3L ENSG00000100139.14::ENSG00000100129.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2563 FALSE NA FALSE NA MICALL1 ENSG00000100139.14 protein_coding + + chr22:37905657-37942822:+ chr22:37927826:+ chr22:38301664-38338829:+ chr22:38323833:+ EIF3L ENSG00000100129.18 protein_coding + + chr22:37848868-37889407:+ chr22:37877674:+ chr22:38244875-38285414:+ chr22:38273681:+ chr22:37929218 chr22:37876042 NA NA chr22:38325225 chr22:38272049 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame CH|5-107|3.9e-30^CAMSAP_CH|24-86|3e-06^CH_2|24-72|2.9e-05^LIM|164-217|1.6e-09^bMERB_dom|741-872|9.3e-48 none ["Klijn_CellLines","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.02Mb];LOCAL_REARRANGEMENT:+:[16250] 13 12 13 12 ONLY_REF_SPLICE YES_LDAS 0.3484 GT 1.9086 AG 1.7232 ENST00000680578.1 1-2052 ENST00000381683.10 934-1551 chr22|+|[0]37906423-37906568[1]|[2]37911952-37912000[2]|[0]37912351-37912492[0]|[1]37917707-37917795[2]|[0]37919036-37919178[1]|[2]37921972-37922426[0]|[1]37924660-37924717[1]|[2]37925661-37926043[0]|[1]37926956-37927126[0]|[1]37927411-37927826[2]<==>chr22|+|[0]37877674-37878171[2]|[0]37886765-37886845[2]|[0]37888426-37888464[2] atggctgggccgcggggcgcgctgctggcctggtgccgccgccagtgcgagggctaccgcggcgtggagatccgcgacctgagcagctccttccgggacggcctggccttctgcgccatcctgcaccggcaccggcccgacctgctagattttgattcgctttccaaggacaatgtcttcgagaataaccgtttggcctttgaagtggctgagaaggagctggggatccccgctctcctggaccccaatgacatggtctccatgagcgtccctgactgcctcagcatcatgacctatgtgtcccagtattacaaccacttctgcagtcctggccaagctggtgtctcgccacccagaaagggccttgcaccctgttccccgccgtctgtagcacccactccagtggaaccagaagatgtggctcagggcgaggagctctcctcaggcagcctgtcagagcagggcaccggccagacccccagcagcacgtgcgcagcctgccagcagcatgtgcacttggtgcagcgctacctggctgacggcaggctgtaccatcgccactgcttccggtgtcggcggtgctccagcaccctgctccctggggcttatgagaatgggcctgaggagggcacctttgtgtgtgcagaacactgtgccaggctgggcccggggacacggtcggggaccaggcctgggcccttctcacagccaaagcagcagcaccagcagcaactcgcagaagatgccaaggatgttccaggaggcggccccagctccagtgctcctgcaggggctgaggccgatggacccaaggccagccctgaggcccggccgcagatccctaccaagccccgggttcctggcaaactacaggagctggccagcccccctgcgggccgccccacccctgcccccaggaaggcctctgagagcaccaccccagcaccccccacgccccggccccgctccagtctgcagcaggagaacctggtggagcaggctggcagcagcagcctggtgaacgggagactgcacgaactgcctgtccccaagccgagggggacaccgaagccgtccgaggggacaccagcccccaggaaggaccccccatggatcacgctggtgcaggcagaaccaaagaagaagccagccccacttcccccaagcagcagcccggggccaccaagccaggacagcaggcaggtggagaatggaggcaccgaggaggtggcccagccgagcccaacggccagcctggagtccaaaccctataacccctttgaggaggaggaggaggacaaggaggaagaggctccagctgcacccagcctggccaccagccctgccctgggccacccggagtccacacccaagtccctgcacccctggtacggcatcacccctaccagcagccccaagacaaagaagcgccctgccccgcgcgcacccagcgcgtccccactggataatgtgtttggaagcatcatatccatcagccacgaggagataaattggtgcccggcagtgcctgtcccagagctggtggctgcgagggctgcgtgctcctcccctctgcctccgcactgcagatcaggggcagaggaggggccacctctcttcctctggcattcccaagctctccacgcctcccgcctctcgcactcggagccgccctcggccacaccatcgccagcgctcagcgtggagagcctgtcgtctgagagcgccagccagactgcaggtgcagagcttctggagccgccagctgtgcccaagagctcctcagagcctgctgtccatgcccctggtacccctggaaaccctgtcagcctctctaccaactcctccctggcctcctctggggaactagtggagcctagagtggaacaaatgcctcaagccagccctggccttgcccccaggaccaggggcagctcaggtccccagccagccaagccctgcagtggcgccaccccaacgcctctcttgttggttggagacaggagcccggtgccttcccctggaagctcgtccccacagctgcaggtaaagATTAACAAGCAGAATGAGCAGATGCATGCGCTGCTGGCCATTGCCCTCACGATGTACCCCATGCGTATTGATGAGAGCATTCACCTCCAGCTGCGGGAGAAATATGGGGACAAGATGTTGCGCATGCAGAAAGGTGACCCACAAGTCTATGAAGAACTTTTCAGTTACTCCTGCCCCAAGTTCCTGTCGCCTGTAGTGCCCAACTATGATAATGTGCACCCCAACTACCACAAAGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGATGAAGTACAGCAGCAGGCCCAGCTTTCAACCATCCGCAGCTTCCTGAAGCTCTACACCACCATGCCTGTGGCCAAGCTGGCTGGCTTCCTGGACCTCACAGAGCAGGAGTTCCGGATCCAGCTTCTTGTCTTCAAACACAAGATGAAGAACCTCGTGTGGACCAGCGGTATCTCAGCCCTGGATGGTGAATTTCAGTCAGCCTCAGAGGTTGACTTCTACATTGATAAGGACATGATCCACATCGCGGACACCAAGGTCGCCAGGCGTTATGGGGATTTCTTCATCCGTCAGATCCACAAATTTGAGGAGCTTAATCGAACCCTGAAGAAGATGGGACAGAGACCTTGA MAGPRGALLAWCRRQCEGYRGVEIRDLSSSFRDGLAFCAILHRHRPDLLDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFCSPGQAGVSPPRKGLAPCSPPSVAPTPVEPEDVAQGEELSSGSLSEQGTGQTPSSTCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARLGPGTRSGTRPGPFSQPKQQHQQQLAEDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGRPTPAPRKASESTTPAPPTPRPRSSLQQENLVEQAGSSSLVNGRLHELPVPKPRGTPKPSEGTPAPRKDPPWITLVQAEPKKKPAPLPPSSSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEEEAPAAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKKRPAPRAPSASPLDNVFGSIISISHEEINWCPAVPVPELVAARAACSSPLPPHCRSGAEEGPPLFLWHSQALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVHAPGTPGNPVSLSTNSSLASSGELVEPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVKINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKMGQRP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Ovary,Uterus_corpus,Lung no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33782 HUWE1::ARHGAP6 ENSG00000086758.17::ENSG00000047648.23 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2559 TRUE 4656 TRUE 1767 HUWE1 ENSG00000086758.17 protein_coding - - chrX:53532096-53686752:- chrX:53684180:- chrX:53559057-53713697:- chrX:53711125:- ARHGAP6 ENSG00000047648.23 protein_coding - - chrX:11117651-11665920:- chrX:11254707:- chrX:11135771-11684040:- chrX:11272827:- chrX:53682112,chrX:53682116 chrX:11275180,chrX:11275181 NA NA chrX:53709057,chrX:53709061 chrX:11293300,chrX:11293301 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chrX:41.87Mb] 9 28 9 2.09 ONLY_REF_SPLICE YES_LDAS 0.1545 GT 1.5329 AG 1.9086 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33785 GSK3A::NUCB1 ENSG00000105723.13::ENSG00000104805.17 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2566 FALSE NA FALSE NA GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42239955:- chr19:42730377-42746777:- chr19:42744107:- NUCB1 ENSG00000104805.17 protein_coding + + chr19:48900050-48923473:+ chr19:48911149:+ chr19:49403307-49426730:+ chr19:49414406:+ chr19:42239254,chr19:42239256 chr19:48910620,chr19:48910618 NA NA chr19:42743406,chr19:42743408 chr19:49413877,chr19:49413875 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame Pkinase|119-403|1.1e-69^ABC1|122-148|0.0014^PK_Tyr_Ser-Thr|123-319|1.1e-28^Kinase-like|123-165|0.19^APH|133-205|0.13^Kinase-like|226-309|2e-06^Kdo|226-264|2.2e-05^ABC1|232-270|3.7e-05^APH|238-256|4e-05 Exonuc_VII_L-PARTIAL|~377-429|0.00015 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr19:6.66Mb] 8 11 8 11 ONLY_REF_SPLICE YES_LDAS 0.2648 GT 1.8323 AG 1.9329 ENST00000453535.1 1-471 ENST00000452087.6 377-1413 chr19|-|[2]42239955-42240142[1]|[0]42242183-42242465[0]<==>chr19|+|[1]48911149-48911252[2]|[0]48913011-48913196[2]|[0]48913474-48913532[1]|[2]48918667-48918784[2]|[0]48919030-48919122[2]|[0]48919194-48919286[2]|[0]48921154-48921324[2]|[0]48921827-48921932[0]|[1]48922318-48922424[2] atgagcggcggcgggccttcgggaggcggccctgggggctcgggcagggcgcggactagctcgttcgcggagcccggcggcggaggcggaggaggcggcggcggccccggaggctcggcctccggcccaggcggcaccggcggcggaaaggcatctgtcggggccatgggtgggggcgtcggggcctcgagctccgggggtggacccggcggcagcggcggaggaggcagcggaggccccggcgcaggcactagcttcccgccgcccggggtgaagctgggccgtgacagcgggaaggtgaccacagtcgtagccactctaggccaaggcccagagcgctcccaagaagtggcttacacggacatcaaagtgattggcaatggctcatttggggtcgtgtaccaggcacggctggcagagaccagggaactagtcgccatcaagaaggttctccaggacaagaggttcaagATGTACAGGTGGATCATCTGAATCTCCTGAAACAGTTTGAACACCTGGACCCTCAGAACCAGCATACATTCGAGGCCCGCGACCTGGAGCTGCTGATCCAGACGGCCACCCGGGACCTTGCCCAGTACGACGCAGCCCATCATGAAGAGTTCAAGCGCTACGAGATGCTTAAGGAACACGAGAGACGGCGTTATCTGGAGTCACTGGGAGAGGAGCAGAGAAAGGAGGCGGAGAGGAAGCTGGAAGAGCAACAGCGCCGGCACCGCGAGCACCCTAAAGTCAACGTGCCTGGCAGCCAAGCCCAGTTGAAGGAGGTGTGGGAGGAGCTGGATGGACTGGACCCCAACAGGGACCTTACACATCCCGTCCTCGGTCCCCTGAGATACCTTGCTATCCTCTTCCCTTCAGATATCAACAGTGATGGTGTCCTGGATGAGCAGGAGCTGGAGGCACTCTTCACCAAGGAGCTGGAGAAAGTGTACGACCCAAAGAATGAGGAGGACGACATGCGGGAGATGGAGGAGGAGCGACTGCGCATGCGGGAGCATGTGATGAAGAATGTGGACACCAACCAGGACCGCCTCGTGACCCTGGAGGAGTTCCTCGCATCCACTCAGAGGAAGGAGTTTGGGGACACCGGGGAGGGCTGGGAGACAGTGGAGATGCACCCTGCCTACACCGAGGAAGAGCTGAGGCGCTTTGAAGAGGAGCTGGCTGCCCGGGAGGCAGAGCTGAATGCCAAGGCCCAGCGCCTCAGCCAGGAGACAGAGGCTCTAGGGCGGTCCCAGGGCCGCCTGGAGGCCCAGAAGAGAGAGCTGCAGCAGGCTGTGCTGCACATGGAGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAAGGCCACAAGGCCCCGGCTGCCCACCCTGAGGGGCAGCTCAAGTTCCACCCAGACACAGACGATGTACCTGTCCCAGCTCCAGCCGGTGACCAGAAGGAGGTGGACACTTCAGAAAAGAAACTTCTCGAGCGGCTCCCTGAGGTTGAGGTGCCCCAGCATCTGTGA MSGGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGGGSGGPGAGTSFPPPGVKLGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGNGSFGVVYQARLAETRELVAIKKVLQDKRFKMYRWII*IS*NSLNTWTLRTSIHSRPATWSC*SRRPPGTLPSTTQPIMKSSSATRCLRNTRDGVIWSHWERSRERRRRGSWKSNSAGTASTLKSTCLAAKPS*RRCGRSWMDWTPTGTLHIPSSVP*DTLLSSSLQISTVMVSWMSRSWRHSSPRSWRKCTTQRMRRTTCGRWRRSDCACGSM**RMWTPTRTAS*PWRSSSHPLRGRSLGTPGRAGRQWRCTLPTPRKS*GALKRSWLPGRQS*MPRPSASARRQRL*GGPRAAWRPRRESCSRLCCTWSSGSSSSSSSKATRPRLPTLRGSSSSTQTQTMYLSQLQPVTRRRWTLQKRNFSSGSLRLRCPSIC FALSE FALSE NA NA FALSE NA NA FALSE NA NA TRUE FALSE Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33787 LGALS3BP::CYTH1 ENSG00000108679.13::ENSG00000108669.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2555 FALSE NA FALSE NA LGALS3BP ENSG00000108679.13 protein_coding - - chr17:78971238-78979947:- chr17:78972970:- chr17:76967320-76976029:- chr17:76969052:- CYTH1 ENSG00000108669.18 protein_coding - - chr17:78674048-78782297:- chr17:78709732:- chr17:76670130-76778379:- chr17:76705814:- chr17:78972958 chr17:78747401 NA NA chr17:76969040 chr17:76743483 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame SRCR|28-124|7.2e-36^Hepsin-SRCR|39-72|0.00067^SRCR_2|42-73|1.9e-06^SRCR_2|102-158|0.084^Hepsin-SRCR|102-152|0.041^BACK|261-358|1.1e-15^SRCR_2|486-500|3.5^SRCR|488-526|0.95 APG6_N-PARTIAL|~23-69|6.9e-06^SLX9-PARTIAL|~23-72|1.3e-05^FapA-PARTIAL|~23-76|1.2e-05^BBS2_C-PARTIAL|~23-71|0.00068^GPS2_interact-PARTIAL|~23-65|5e-05^Sec7|62-244|4.9e-82^PH_20|133-147|4.3^Pilosulin|185-208|8.2e-05^PH|263-376|1.3e-27^PH_20|263-324|1.6e-05^PH_11|264-374|3.2e-09^PH_8|265-312|9.7e-06^PH_3|278-319|2.1e-05^BBS2_C|301-355|0.0066^PH_8|347-374|1.7^PH_3|361-374|3 ["LGALS3BP:Oncogene"];["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.19Mb] 6 8 6 7.33 ONLY_REF_SPLICE YES_LDAS 0.1858 GT 1.9656 AG 1.9656 ENST00000262776.8 1-629 ENST00000446868.8 23-1197 chr17|-|[1]78972970-78973222[1]|[0]78974688-78974819[1]|[0]78975965-78976156[1]|[0]78977140-78977191[0]<==>chr17|-|[2]78676091-78676169[2]|[1]78680190-78680344[0]|[2]78680971-78681042[0]|[2]78692417-78692493[1]|[0]78696007-78696009[1]|[0]78698269-78698380[0]|[2]78698820-78698968[1]|[0]78700331-78700443[2]|[1]78701671-78701751[2]|[1]78702122-78702240[0]|[2]78702538-78702604[2]|[1]78708197-78708261[0]|[2]78709650-78709732[1] atgacccctccgaggctcttctgggtgtggctgctggttgcaggaacccaaggcgtgaacgatggtgacatgcggctggccgatgggggcgccaccaaccagggccgcgtggagatcttctacagaggccagtggggcactgtgtgtgacaacctgtgggacctgactgatgccagcgtcgtctgccgggccctgggcttcgagaacgccacccaggctctgggcagagctgccttcgggcaaggatcaggccccatcatgctggatgaggtccagtgcacgggaaccgaggcctcactggccgactgcaagtccctgggctggctgaagagcaactgcaggcacgagagagacgctggtgtggtctgcaccaatgaaaccaggagcacccacaccctggacctctccagggagctctcggaggcccttggccagatctttgacagccagcggggctgcgacctgtccatcagcgtgaatgtgcagggcgaggacgccctgggcttctgtggccacacggtcatcctgactgccaacctggaggcccaggccctgtggaaggagccgggcagcaatgtcaccatgagtgtggatgctgagtgtgtgcccatggtcagggaccttctcagTTCCCAGTGACCTGACAGCAGAGGAGCGTCAAGAACTGGAGAACATCCGACGGAGAAAACAGGAGCTGCTGGCTGACATTCAGAGGCTGAAGGATGAGATAGCAGAAGTAGCTAATGAAATTGAAAACCTGGGATCCACAGAGGAAAGGAAAAACATGCAGAGGAACAAACAGGTAGCCATGGGCAGGAAAAAATTTAATATGGACCCTAAAAAGGGGATCCAGTTCTTAATAGAGAACGACCTCCTGAAGAACACTTGTGAAGACATTGCCCAGTTCTTATATAAAGGCGAAGGGCTCAACAAGACAGCCATCGGCGACTACCTAGGGGAGAGAGATGAGTTTAATATCCAGGTTCTTCATGCATTTGTGGAGCTGCATGAGTTCACTGATCTTAATCTCGTCCAGGCACTACGGCAGTTCCTGTGGAGCTTCCGGCTACCCGGAGAGGCCCAGAAGATCGACCGGATGATGGAGGCGTTTGCCCAGCGATATTGTCAGTGCAATAATGGCGTGTTCCAGTCCACGGATACTTGTTACGTCCTCTCCTTTGCCATCATCATGTTGAACACCAGTCTGCACAACCCCAATGTCAAAGATAAGCCCACTGTGGAGAGGTTCATTGCCATGAACCGAGGCATCAATGATGGGGGAGACCTGCCGGAGGAGCTCCTCCGGAATCTCTATGAGAGCATAAAAAATGAACCCTTTAAAATCCCAGAAGACGACGGGAATGACCTCACTCACACTTTCTTCAATCCAGACCGAGAAGGCTGGCTATTGAAACTCGGAGGTGGCAGGGTAAAGACTTGGAAGAGACGCTGGTTCATTCTGACTGACAACTGCCTTTACTACTTTGAGTATACCACGGATAAGGAGCCCCGTGGAATCATCCCTTTAGAGAATCTGAGTATCCGGGAAGTGGAGGACTCCAAAAAACCAAACTGCTTTGAGCTTTATATCCCCGACAATAAAGACCAAGTTATCAAGGCCTGCAAGACCGAGGCTGACGGGCGGGTGGTGGAGGGGAACCACACTGTTTACCGGATCTCAGCTCCGACGCCCGAGGAGAAGGAGGAGTGGATTAAGTGCATTAAAGCAGCCATCAGCAGGGACCCTTTCTACGAAATGCTCGCAGCACGGAAAAAGAAGGTCTCCTCCACGAAGCGACACTGA MTPPRLFWVWLLVAGTQGVNDGDMRLADGGATNQGRVEIFYRGQWGTVCDNLWDLTDASVVCRALGFENATQALGRAAFGQGSGPIMLDEVQCTGTEASLADCKSLGWLKSNCRHERDAGVVCTNETRSTHTLDLSRELSEALGQIFDSQRGCDLSISVNVQGEDALGFCGHTVILTANLEAQALWKEPGSNVTMSVDAECVPMVRDLLSSQ*PDSRGASRTGEHPTEKTGAAG*HSEAEG*DSRSS**N*KPGIHRGKEKHAEEQTGSHGQEKI*YGP*KGDPVLNRERPPEEHL*RHCPVLI*RRRAQQDSHRRLPRGER*V*YPGSSCICGAA*VH*S*SRPGTTAVPVELPATRRGPEDRPDDGGVCPAILSVQ*WRVPVHGYLLRPLLCHHHVEHQSAQPQCQR*AHCGEVHCHEPRHQ*WGRPAGGAPPESL*EHKK*TL*NPRRRRE*PHSHFLQSRPRRLAIETRRWQGKDLEETLVHSD*QLPLLL*VYHG*GAPWNHPFRESEYPGSGGLQKTKLL*ALYPRQ*RPSYQGLQDRG*RAGGGGEPHCLPDLSSDARGEGGVD*VH*SSHQQGPFLRNARSTEKEGLLHEATL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33792 ENSG00000279539::GSK3A ENSG00000279539.1::ENSG00000105723.13 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA TRUE 4903 TRUE 1802 ENSG00000279539 ENSG00000279539.1 TEC + + chr19:42242775-42244973:+ chr19:42243535:+ chr19:42746927-42749125:+ chr19:42747687:+ GSK3A ENSG00000105723.13 protein_coding - - chr19:42226225-42242625:- chr19:42236941:- chr19:42730377-42746777:- chr19:42741093:- chr19:42244086,chr19:42244084 chr19:42239557,chr19:42239559 NA NA chr19:42748238,chr19:42748236 chr19:42743709,chr19:42743711 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none none 5 10 5 10 INCL_NON_REF_SPLICE YES_LDAS 0.2091 GT 1.9329 AG 1.8256 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA TRUE FRAME_UNKNOWN Glycogen synthase kinase-3 alpha CMGC GSK P49840 FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33793 TBC1D22A::ATXN10 ENSG00000054611.14::ENSG00000130638.18 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2572 FALSE NA FALSE NA TBC1D22A ENSG00000054611.14 protein_coding + + chr22:46762617-47175699:+ chr22:46997709:+ chr22:47158514-47571342:+ chr22:47393605:+ ATXN10 ENSG00000130638.18 protein_coding + + chr22:45671798-45845307:+ chr22:45842991:+ chr22:46067678-46241187:+ chr22:46238871:+ chr22:47106577,chr22:47106577 chr22:45822557,chr22:45822546 NA NA chr22:47502473,chr22:47502473 chr22:46218437,chr22:46218426 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RabGAP-TBC|227-469|5.8e-48 none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr22:0.92Mb] 4 7 4 4 ONLY_REF_SPLICE YES_LDAS 0.1114 GT 1.8892 AG 1.9329 ENST00000337137.9 1-1201 ENST00000381061.8 1046-1236 chr22|+|[0]46762787-46762848[1]|[2]46792520-46792576[1]|[2]46793501-46793841[0]|[1]46797444-46797620[0]|[1]46878653-46878723[2]|[0]46891266-46891394[2]|[0]46894784-46894846[2]|[0]46912074-46912188[0]|[1]46974290-46974399[2]|[0]46997634-46997709[0]<==>chr22|+|[1]45842991-45843178[2]|[0]45843669-45843671[2] atggccagcgacggggccaggaagcaattctggaagcgcagcaacagcaagctcccgggcagcatccagcacgtgtatggtgcccagcaccccccctttgatccactgttacatggcactttgctcaggtccacggccaagatgccgaccacaccagtgaaggccaagagggtcagcaccttccaggagtttgagagcaataccagcgatgcctgggacgctggggaggacgacgatgagctcctggccatggcggcggagagcctgaactccgaggtggtcatggagacggccaaccgtgtgctgcgtaaccacagccagcggcaggggcggcccacgctgcaggaggggccagggcttcagcagaagcccaggcccgaggcagagccgccctcaccccccagcggcgacctccggctggtgaagtcggtcagtgagagccacacgtcctgtcctgcagaaagtgccagcgatgccgcccctctgcagaggtcccagtctctcccacactcggccaccgtcacgctgggtggcacatctgaccccagcactctcagcagctcagcgctgagcgaaagagaggcctcccggctcgacaagttcaagcagctgcttgccggccccaacacggaccttgaggaattacggaggttgagctggtccggaatccctaagccagtgcgtccaatgacgtggaagctcctctcaggttaccttcccgccaatgtagaccggagaccagccactctccagagaaaacaaaaagaatattttgcatttattgagcactattacgattctaggaacgacgaagttcaccaggacacatacaggcagatccacatagacatccctcgcatgagccctgaagcgttgatcctgcagcccaaggtgacggagatttttgaaaggatcttgttcatatgggcgatccgccacccagccagtggatacgttcagggtataaatgatctcgtcactcctttctttgtggtcttcatttgtgaatacatagaggcagaggaggtggacacggtggacgtctccggcgtgcccgcagaggtgctgtgcaacatcgaggccgacacctactggtgcatgagcaagctgctggatggcattcaggacaactacacctttgcccaacctgggattcaaatgaaagtgaaaatgttagaagaactcgtgagccggattgatgTTCTGACCCAGTGGGTGATATATGCCATCCGAAACCTTACCGAAGACAACAGCCAAAACCAAGATTTGATTGCAAAGATGGAGGAACAGGGGCTGGCAGATGCATCCCTACTTAAAAAAGTGGGTTTTGAAGTTGAAAAGAAAGGCGAAAAGCTGATCCTGAAATCTACTAGAGACACCCCTAAGCCATGA MASDGARKQFWKRSNSKLPGSIQHVYGAQHPPFDPLLHGTLLRSTAKMPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSEVVMETANRVLRNHSQRQGRPTLQEGPGLQQKPRPEAEPPSPPSGDLRLVKSVSESHTSCPAESASDAAPLQRSQSLPHSATVTLGGTSDPSTLSSSALSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDVLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLKKVGFEVEKKGEKLILKSTRDTPKP* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33795 TDRD3::DMTF1 ENSG00000083544.16::ENSG00000135164.19 FADU SRR8616215 SRR8639233 UPPER_AERODIGESTIVE_TRACT carcinoma (squamous_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2569 FALSE NA FALSE NA TDRD3 ENSG00000083544.16 protein_coding + + chr13:60396457-60573878:+ chr13:60535233:+ chr13:60970591-61148012:+ chr13:61109367:+ DMTF1 ENSG00000135164.19 protein_coding + + chr7:87152409-87196337:+ chr7:87181309:+ chr7:86781725-86825653:+ chr7:86810625:+ chr13:60566714 chr7:87181149 NA NA chr13:61140848 chr7:86810465 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame RMI1_N_C|53-83|0.00034^RMI1_N_C|87-165|8.7e-23^UBA|287-323|5e-11^SMN_Tudor|647-698|9.9e-09^SGF29_Tudor|647-687|6.8e-05^TUDOR|648-704|6.4e-14 none ["DMTF1:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr13--chr7] 4 8 4 8 ONLY_REF_SPLICE YES_LDAS 0.1672 GT 1.7819 AG 1.8295 ENST00000377881.8 1-2118 ENST00000394703.9 678-2283 chr13|+|[0]60397365-60397405[1]|[2]60439688-60439772[2]|[0]60444683-60444748[2]|[0]60460380-60460540[1]|[2]60467238-60467379[2]|[0]60483775-60483846[2]|[0]60485799-60485948[2]|[0]60494435-60494575[2]|[0]60509763-60509919[0]|[1]60510630-60510755[0]|[1]60528367-60529217[2]|[0]60535108-60535233[2]<==>chr7|+|[2]87181309-87181341[1]|[2]87182228-87182337[0]|[1]87184397-87184625[1]|[2]87185829-87185980[0]|[1]87188092-87188301[0]|[1]87190945-87191027[2]|[0]87193198-87193353[2]|[0]87193725-87194102[2]|[0]87194684-87194828[0]|[1]87195031-87195140[2] atggcccaggtggccggcgcggcgttgtcccaggcgggttggtatctttcagatgaaggcattgaagcttgcacaagctctccagacaaagtcaatgtaaatgacatcatcctgattgctctcaatacagatctgagaacaattggcaagaaattcctccccagtgacatcaatagtggaaaggtagaaaagctcgaaggtccatgtgttttgcaaattcaaaaaattcgcaatgttgctgcaccaaaggataatgaagaatctcaggctgcaccaaggatgctgcgattacagatgactgatggtcatataagttgcacagcagtagaatttagttatatgtcaaaaataagcctgaacacaccacctggaactaaagttaagctctcaggcattgttgacataaaaaatggattcctgctcttgaatgactctaacaccacagttcttggtggtgaagtggaacaccttattgagaaatgggagttacagagaagcttatcaaaacacaatagaagcaatattggaactgaaggtggaccaccgccttttgtgccttttggacagaagtgtgtatctcatgtccaagtggatagcagagaacttgatcgaagaaaaacattgcaagttacaatgcctgtcaaacctacaaatgataatgatgaatttgaaaagcaaaggacggctgctattgctgaagttgcaaagagcaaggaaaccaagacatttggaggaggtggtggtggtgctagaagtaatctcaatatgaatgctgctggtaaccgaaatagggaagttttacagaaagaaaagtcaaccaaatcagagggaaaacatgaaggtgtctatagagaactggttgatgagaaagctctgaagcacataacggaaatgggcttcagtaaggaagcatcgaggcaagctcttatggataatggcaacaacttagaagcagcactgaacgtacttcttacaagcaataaacagaaacctgttatgggtcctcctctgagaggtagaggaaaaggcagggggcgaataagatctgaagatgaagaggacctgggaaatgcaaggccatcagcaccaagcacattatttgatttcttggaatctaaaatgggaactttgaatgtggaagaacctaaatcacagccacagcagcttcatcagggacaatacagatcatcaaatactgagcaaaatggagtaaaagataataatcatctgagacatcctcctcgaaatgataccaggcagccaagaaatgaaaaaccgcctcgttttcaaagagactcccaaaattcaaagtcagttttagaaggcagtggattacctagaaatagaggttctgaaagaccaagtacttcttcagtatctgaagtatgggctgaagacagaatcaaatgtgatagaccgtattctagatatgacagaactaaagatacttcatatcctttaggttctcagcatagtgatggtgcttttaaaaaaagagataactctatgcaaagcagatcaggaaaaggtccctcctttgcagaggcaaaagaaaatccacttcctcaaggatctgtagattataataatcaaaaacgtggaaaaagagaaagccaaacatctattcctgattatttttatgacaggaaatcacaaacaataaataatgaagctttcagtggtataaaaattgaaaaacattttaatgtaaatactgattatcagaatccagttcgaagtaatagtttcattggtgttccaaatggagaagtagaaatgccactgaaaggaagacgaataggacctattaagccagcaggacctgtcacagctgtaccctgtgatgataaaatattttacaatagtgggcccaaacgaagatctgggccaattaagccagaaaaaatactagaatcatctattcctatggagtatgcaaaaatgtggaaacctggagatgaatgttttgcactttattgggaagacaacaagttttaccgggcagaagttgaagccctccattcttcgggtatgacagcagttgttaaattcattgactacggaaactatgaagaggtgctactgagcaatatcaagcccattcaaacagaggcatggATATACACCTGAAGAAATTGAGAAGCTCAAGGAGCTCCGGATAAAGCATGGCAATGACTGGGCAACAATAGGGGCGGCGCTAGGAAGAAGTGCATCTTCTGTCAAAGATCGGTGCCGACTGATGAAGGATACTTGCAACACAGGGAAGTGGACAGAAGAAGAAGAAAAGAGACTTGCAGAAGTGGTTCATGAGTTGACAAGCACTGAGCCAGGTGACATAGTCACACAGGGTGTGTCTTGGGCAGCTGTGGCTGAACGAGTCGGTACCCGCTCAGAAAAGCAATGTCGTTCTAAATGGCTCAACTACCTGAATTGGAAACAGAGTGGGGGTACTGAATGGACCAAGGAAGATGAAATCAATCTCATCCTCAGGATAGCAGAACTTGATGTAGCTGATGAAAATGACATTAACTGGGATCTGTTAGCTGAGGGATGGAGTAGTGTCCGTTCACCACAATGGCTACGAAGTAAATGGTGGACCATCAAAAGGCAAATTGCAAACCATAAGGATGTTTCGTTCCCTGTCTTAATAAAAGGTCTTAAACAGTTACATGAGAACCAAAAAAACAACCCAACGCTTTTGGAGAATAAATCAGGATCTGGAGTTCCAAACAGTAATACCAATTCCAGTGTGCAGCATGTTCAGATAAGAGTTGCCCGCTTGGAAGATAATACAGCCATCTCTTCTAGCCCCATGGCAGCATTGCAGATTCCAGTCCAGATCACCCATGTTTCTTCAGCAGACTCTCCTGCTACCGTTGACTCAGAAACAATAACACTAAACAGTGGAACACTACAGACATTTGAGATTCTTCCCTCTTTCCATCTACAGCCCACTGGCACTCCAGGCACCTACCTACTTCAAACAAGCTCAAGCCAAGGCCTTCCCCTAACTCTGACTGCTAGTCCCACAGTAACCCTGACAGCTGCTGCTCCTGCTTCTCCTGAACAGATTATTGTTCATGCTTTATCCCCAGAACATTTGTTGAACACAAGTGATAATGTTACAGTGCAGTGTCACACACCAAGAGTCATCATTCAGACTGTTGCCACAGAGGACATCACTTCTTCCATATCCCAAGCAGAACTGACAGTCGATAGTGATATTCAGTCATCTGATTTTCCTGAGCCTCCAGACGCCCTAGAAGCAGACACTTTCCCAGATGAAATTCATCACCCTAAGATGACTGTGGAGCCATCATTTAATGATGCTCATGTATCCAAATTCAGTGACCAAAATAGCACAGAACTGATGAATAGTGTTATGGTCAGAACAGAAGAAGAAATCTCTGACACCGACCTTAAACAAGAGGAATCACCCTCTGATTTAGCCAGTGCTTATGTTACTGAGGGTTTAGAGTCTCCCACTATAGAAGAACAAGTTGATCAAACAATTGATGATGAAACAATACTTATCGTTCCTTCACCACATGGCTTTATCCAGGCATCTGATGTTATAGATACTGAATCTGTCTTGCCTTTGACAACACTAACAGATCCCATACTCCAACATCATCAGGAAGAATCAAATATCATTGGATCATCCTTGGGCAGTCCTGTTTCAGAAGATTCAAAGGATGTCGAAGATTTGGTAAACTGTCATTAG MAQVAGAALSQAGWYLSDEGIEACTSSPDKVNVNDIILIALNTDLRTIGKKFLPSDINSGKVEKLEGPCVLQIQKIRNVAAPKDNEESQAAPRMLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWIYT*RN*EAQGAPDKAWQ*LGNNRGGARKKCIFCQRSVPTDEGYLQHREVDRRRRKETCRSGS*VDKH*AR*HSHTGCVLGSCG*TSRYPLRKAMSF*MAQLPELETEWGY*MDQGR*NQSHPQDSRT*CS**K*H*LGSVS*GME*CPFTTMATK*MVDHQKANCKP*GCFVPCLNKRS*TVT*EPKKQPNAFGE*IRIWSSKQ*YQFQCAACSDKSCPLGR*YSHLF*PHGSIADSSPDHPCFFSRLSCYR*LRNNNTKQWNTTDI*DSSLFPSTAHWHSRHLPTSNKLKPRPSPNSDC*SHSNPDSCCSCFS*TDYCSCFIPRTFVEHK**CYSAVSHTKSHHSDCCHRGHHFFHIPSRTDSR**YSVI*FS*ASRRPRSRHFPR*NSSP*DDCGAII**CSCIQIQ*PK*HRTDE*CYGQNRRRNL*HRP*TRGITL*FSQCLCY*GFRVSHYRRTS*SNN***NNTYRSFTTWLYPGI*CYRY*ICLAFDNTNRSHTPTSSGRIKYHWIILGQSCFRRFKGCRRFGKLSL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33802 DUSP22::STMND1 ENSG00000112679.15::ENSG00000230873.9 EOL1 SRR8616218 SRR8639143 HAEMATOPOIETIC_AND_LYMPHOID_TISSUE haematopoietic_neoplasm (acute_myeloid_leukaemia\, M5) primary star-fusion TRUE TRUE TRUE 2575 FALSE NA FALSE NA DUSP22 ENSG00000112679.15 protein_coding + + chr6:291630-351355:+ chr6:311962:+ chr6:291630-351355:+ chr6:311962:+ STMND1 ENSG00000230873.9 protein_coding + + chr6:17102050-17131378:+ chr6:17114962:+ chr6:17102281-17131609:+ chr6:17115193:+ chr6:323706,chr6:323704 chr6:17105628,chr6:17105623 NA NA chr6:323706,chr6:323704 chr6:17105859,chr6:17105854 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame DSPc-PARTIAL|12-138~|9.4e-38^Init_tRNA_PT|21-36|1.6^NFACT_N|36-105|5.2e-05^PTPlike_phytase|37-104|1.8e-05^Init_tRNA_PT-PARTIAL|58-138~|4.8e-07^Y_phosphatase|59-105|1.1e-07^EZH2_N-PARTIAL|125-138~|0.00043 ELL-PARTIAL|~82-185|2.2e-07^Corazonin-PARTIAL|~82-128|0.00016^Stathmin|96-112|1.5^Stathmin|129-192|2.3e-10^Corazonin|133-208|0.02 ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:16.75Mb] 68 20 68 20 ONLY_REF_SPLICE YES_LDAS 0.6706 GT 1.8892 AG 1.8323 ENST00000344450.9 1-138 ENST00000536551.6 82-831 chr6|+|[0]292540-292560[2]|[0]304628-304661[0]|[1]311880-311962[2]<==>chr6|+|[0]17114962-17115139[0]|[1]17120607-17120758[2]|[0]17129112-17129243[2]|[0]17130594-17130881[2] atggggaatgggatgaacaagatcctgcccggcctgtacatcggcaacttcaaagatgccagagacgcggaacaattgagcaagaacaaggtgacacatattctgtctgtccacgatagtgccaggcctatgttggagGCTGATGTCAGTGTGCCTCATACTGGGGAAAATTGCAGCCCCCGGATGGAAGCTGCTCTGACCAAGAATACTGTGGACATTGCAGAAGGCCTGGAACAAGTCCAGATGGGAAGCTTACCTGGAACCATTTCAGAAAATTCTCCATCTCCTAGTGAAAGAAACAGACGAGTAAATTCAGACCTAGTGACCAATGGATTAATCAATAAACCCCAATCCCTAGAGAGTCGAGAGCGACAGAAGTCATCAGATATCCTGGAGGAACTAATTGTTCAAGGAATTATACAAAGCCACAGCAAAGTATTTAGAAATGGAGAATCATATGATGTCACGTTGACTACGACTGAGAAGCCATTGAGAAAGCCACCTTCCAGACTGAAAAAACTCAAGATCAAAAAGCAAGTGAAGGATTTCACAATGAAGGACATCGAGGAGAAGATGGAGGCTGCCGAGGAGCGCAGGAAGACTAAAGAAGAAGAAATAAGAAAAAGGCTACGGAGTGACCGACTTTTGCCTTCAGCCAATCACTCAGATTCAGCTGAATTAGATGGGGCCGAGGTTGCATTTGCCAAAGGACTTCAAAGGGTGAGGTCTGCTGGATTTGAACCATCTGACCTGCAGGGAGGAAAACCATTGAAGAGGAAGAAGAGTAAATGTGATGCAACCTTGATTGATAGAAACGAAAGTGATGAAAGTTTTGGGGTCGTGGAGTCAGACATGTCCTACAACCAAGCAGATGACATAGTCTACTAA MGNGMNKILPGLYIGNFKDARDAEQLSKNKVTHILSVHDSARPMLEADVSVPHTGENCSPRMEAALTKNTVDIAEGLEQVQMGSLPGTISENSPSPSERNRRVNSDLVTNGLINKPQSLESRERQKSSDILEELIVQGIIQSHSKVFRNGESYDVTLTTTEKPLRKPPSRLKKLKIKKQVKDFTMKDIEEKMEAAEERRKTKEEEIRKRLRSDRLLPSANHSDSAELDGAEVAFAKGLQRVRSAGFEPSDLQGGKPLKRKKSKCDATLIDRNESDESFGVVESDMSYNQADDIVY* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33812 RLF::ZMPSTE24 ENSG00000117000.9::ENSG00000084073.10 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2576 FALSE NA FALSE NA RLF ENSG00000117000.9 protein_coding + + chr1:40161387-40240921:+ chr1:40161636:+ chr1:40627059-40706593:+ chr1:40627308:+ ZMPSTE24 ENSG00000084073.10 protein_coding + + chr1:40258041-40294180:+ chr1:40271894:+ chr1:40723713-40759852:+ chr1:40737566:+ chr1:40188561,chr1:40188559 chr1:40270479,chr1:40270475 NA NA chr1:40654233,chr1:40654231 chr1:40736151,chr1:40736147 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none none ["RLF:Oncogene"];["DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:0.02Mb];NEIGHBORS[17186] 113 30 113 30 ONLY_REF_SPLICE YES_LDAS 1.3649 GT 1.9086 AG 1.8892 ENST00000372771.5 1-237 ENST00000372759.4 628-1428 chr1|+|[0]40161400-40161636[2]<==>chr1|+|[0]40271894-40272035[0]|[1]40281343-40281527[2]|[0]40285925-40286029[2]|[0]40290854-40290997[2]|[0]40292445-40292669[2] atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcggtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgtatctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctgagggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagGTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGGGAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAAGGATCTAAACGCTCTTCCCACAGCAATGCTTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAAACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCTAAAGTTAAAAATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTGGAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAGATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTGTATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTGATCATCTTCCAGTTTATTTTTTCACCTTACAATGAGGTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATTTGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTAACAAAGATAACTTGGGATTCCCTGTTTCTGACTGGTTGTTCTCAATGTGGCATTATTCTCATCCTCCACTGCTAGAGAGACTTCAAGCTTTGAAAACTATGAAGCAACACTGA MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEEYSVLNKDIQEDSGMEPRNEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQH* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33814 CLTC::VMP1 ENSG00000141367.13::ENSG00000062716.13 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE FALSE TRUE 2582 FALSE NA FALSE NA CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59679519:+ chr17:57697045-57774317:+ chr17:57756880:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Clathrin_propel|19-56|2.1e-10^Clathrin_propel|60-99|0.00015^Clathrin_propel|154-192|2.2e-09^Clathrin_propel|203-239|3.7e-12^Clathrin_propel|261-293|1.9e-09^Coatomer_WDAD|283-299|2.1^Clathrin_propel|301-335|2.2e-10^Clathrin-link|336-359|2.5e-17^Clathrin_H_link|361-426|2.2e-34^TPR_14|372-391|0.05^TPR_19|373-393|0.04^TPR_1|374-386|0.062^TPR_2|374-388|0.023^ANAPC3|375-389|0.79^TPR_7|378-388|1.9^TPR_19|411-433|3.8^Coatomer_WDAD|476-512|2^Clathrin|502-531|1.5^Clathrin|547-684|6.2e-30^TPR_7|617-643|0.07^TPR_8|617-643|2.2^TPR_1|618-635|0.24^TPR_2|618-637|0.21^TPR_14|618-638|0.6^TPR_19|625-638|8.3^Clathrin|693-831|3.8e-32^TPR_19|728-754|0.059^ANAPC3|728-758|3.3^TPR_14|732-755|6.4^Clathrin|845-973|6.9e-33^TPR_19|878-894|2.5^TPR_2|879-893|2.9^TPR_7|880-893|2^TPR_8|882-893|7.2^Clathrin|984-1124|1.2e-37^TPR_8|1060-1079|0.83^TPR_14|1093-1118|0.71^Coatomer_WDAD|1094-1168|1.7e-08^TPR_8|1094-1107|4^ANAPC3|1095-1135|0.0042^TPR_19|1096-1130|0.013^TPR_14|1110-1136|0.2^TPR_1|1111-1136|0.00018^TPR_2|1111-1136|0.0018^TPR_8|1112-1136|0.0053^TPR_7|1113-1135|0.02^Clathrin|1134-1272|9e-36^TPR_14|1142-1172|0.031^TPR_7|1152-1170|0.05^TPR_2|1207-1224|3.4^ANAPC3|1226-1252|0.41^TPR_7|1230-1246|0.22^TPR_8|1230-1247|0.23^TPR_1|1231-1247|0.19^TPR_19|1231-1246|6.7^TPR_2|1231-1251|0.51^TPR_14|1232-1252|0.45^Coatomer_WDAD|1238-1310|0.0089^Clathrin|1281-1421|3.5e-33^TPR_14|1288-1326|0.023^TPR_7|1295-1316|0.016^TPR_8|1295-1318|0.46^TPR_8|1360-1383|1.9^TPR_1|1369-1380|2.5^Clathrin|1428-1570|7.4e-36^TPR_14|1540-1564|9.4^TPR_8|1608-1620|7 none ["CLTC:Oncogene"];["Klijn_CellLines","Larsson_TCGA","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.01Mb];NEIGHBORS[10236] 46 18 46 18 ONLY_REF_SPLICE YES_LDAS 0.6109 GT 1.8892 AG 1.8062 ENST00000700709.1 1-2934 ENST00000710770.1 1057-1188 chr17|+|[0]59620132-59620173[2]|[0]59644276-59644495[0]|[1]59646017-59646019[0]|[1]59647398-59647666[2]|[0]59648240-59648401[2]|[0]59651203-59651316[2]|[0]59655854-59656027[2]|[0]59660391-59660588[2]|[0]59661443-59661643[2]|[0]59663842-59663994[2]|[0]59664787-59664909[2]|[0]59666103-59666240[2]|[0]59666480-59666644[2]|[0]59666797-59666977[0]|[1]59668777-59668940[2]|[0]59673647-59673772[2]|[0]59674701-59674843[1]|[2]59676954-59677188[2]|[0]59679397-59679519[2]<==>chr17|+|[0]59838295-59838397[0]|[1]59839768-59839796[2] atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatcaacccagcaaacattggcttcagtaccctgactatggagtctgacaaattcatctgcattagagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagtaatccaattcgaagaccaatttcagcagacagcgccatcatgaatccagctagcaaagtaattgcactgaaaggtataaaagaatatgctgggaaaactcttcagatttttaacattgaaatgaaaagtaaaatgaaggctcataccatgactgatgatgtcaccttttggaaatggatctctttgaatacggttgctcttgttacggataatgcagtttatcactggagtatggaaggagagtctcagccagtgaaaatgtttgatcgccattctagccttgcagggtgccagattatcaattaccgtacagatgcaaaacaaaagtggttacttctgactggtatatctgcacagcaaaatcgtgtggtgggagctatgcagctatattctgtagataggaaagtgtctcagcccattgaaggacatgcagctagctttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagttcggggccaagctggagggaagttacatattattgaagttggcacaccacctacagggaaccagccctttccaaagaaggcagtggatgtcttctttcctccagaagcacaaaatgattttcctgttgcaatgcagatcagtgaaaagcatgatgtggtgttcttgataaccaagtatggttatatccacctctatgatcttgagactggtacctgcatctacatgaatagaatcagtggagaaacaatttttgttactgcacctcatgaagccacagctggaataattggagtaaacagaaagggacaagttctgtcagtgtgtgtggaagaagaaaacataattccttacatcaccaatgttctacaaaatcctgatttggctctgagaatggctgtacgtaataacttagccggtgctgaagaactctttgcccggaaatttaatgctctttttgcccagggaaattactcggaggcagcaaaggtggctgctaatgcaccaaagggaattcttcgtactccagacactatccgtcggttccagagtgtcccagcccagccaggtcaaacttctcctctacttcagtactttggtatccttttggaccagggacagctcaacaaatacgaatccttagagctttgtaggcctgtacttcagcaagggcgaaaacagcttttggagaaatggttaaaagaagataagctggaatgttctgaagaactgggtgatcttgtgaaatctgtggaccctacattggcacttagtgtgtacctaagggctaacgtcccaaataaagtcattcagtgctttgcagaaacaggtcaagtccaaaagattgttttatatgctaaaaaagttggatacactccagattggatatttctgctgagaaatgtaatgcgaatcagtccagatcagggacagcagtttgcccaaatgttagttcaagatgaagagcctcttgctgacatcacacagattgtagatgtctttatggaatacaatctaattcagcagtgtactgcattcttgcttgatgctctgaagaataatcgcccatctgaaggtcctttacagacgcggttacttgagatgaaccttatgcatgcgcctcaagttgcagatgctattctaggcaatcagatgttcacacattatgaccgggctcatattgctcaactgtgtgaaaaggctggcctactgcagcgtgcattagaacatttcactgatttatatgatataaaacgtgcagtggttcacacccatcttcttaaccctgagtggttagtcaactactttggttccttatcagtagaagactccctagaatgtctcagagccatgctgtctgccaacatccgtcagaatctgcagatttgtgttcaggtggcttctaaatatcatgaacaactgtcaactcagtctctgattgaactttttgaatctttcaagagttttgaaggtctcttttattttctgggatccattgttaactttagccaggacccagatgtgcactttaaatatattcaggcagcttgcaagactgggcaaatcaaagaagtagaaagaatctgtagagaaagcaactgctacgatcctgagcgagtcaagaattttcttaaggaagcaaaactaacagatcagctaccacttatcattgtgtgtgatcgatttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatatagagatatatgtacagaaggtgaatccaagtcgacttcctgtagttattggaggattacttgatgttgactgttctgaagatgtcataaaaaacttgattcttgttgtaagaggtcaattctctactgatgagcttgttgctgaggttgaaaaaagaaacagattgaaactgcttctgccttggctagaggccagaattcatgagggctgtgaggagcctgctactcacaatgccttagccaaaatctacatagacagtaataacaacccggagagatttcttcgtgaaaatccctactatgacagtcgcgttgttggaaagtattgtgagaagagagatccacatctggcctgtgttgcttatgaacgtggccaatgtgatctggaacttattaatgtttgcaatgagaattccctcttcaaaagtctttctcgctacctggtacgtcgaaaggatccagaattgtggggcagcgtgctgctggaaagcaatccttacaggagacccctaattgaccagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGA MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKGIKEYAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQCCPRHRSISAEAISGVPGGSTAEASPQKRNGHTTGRKLVVLDV* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast no_match FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation FALSE NA NA NA NA NA NA NA NA NA 33819 YAP1::MAML2 ENSG00000137693.14::ENSG00000184384.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2578 TRUE 4688 TRUE 1778 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102206074:+ chr11:101981178-102104155:+ chr11:102076805:+ MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96093517:- chr11:95709762-96076359:- chr11:95826681:- chr11:102220764,chr11:102220763 chr11:96109405,chr11:96109406 NA NA chr11:102091495,chr11:102091494 chr11:95842569,chr11:95842570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MbtH|49-62|0.73^FAM181|76-108|2.6e-06^MbtH|168-194|9.8e-05^WW|173-202|2.5e-13^MbtH|231-243|0.012^WW|232-261|1.6e-14^FAM181|279-315|0.97 Peptidase_S64|559-679|0.00071^MAML2_TAD|563-582|0.61^RR_TM4-6|573-667|0.00017^MAML2_TAD|577-614|6^MamL-1|588-621|6^Hid1|588-674|0.00011^CDC45|589-663|0.0014^MAML2_TAD|609-681|4e-17^MamL-1|639-661|6^MAML2_TAD|693-721|1.1^MAML2_TAD|745-776|6^MAML2_TAD|892-893|3.7^MAML2_TAD|999-1019|6 ["YAP1:Oncogene"];["MAML2:Oncogene"];["Klijn_CellLines","DEEPEST2019","ChimerPub","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.77Mb] 19 15 19 8.38 ONLY_REF_SPLICE YES_LDAS 0.2614 GT 1.9656 AG 1.8256 ENST00000537274.5 1-984 ENST00000524717.6 514-3471 chr11|+|[0]102110849-102111169[2]|[0]102114144-102114394[1]|[2]102162456-102162571[0]|[1]102186018-102186131[0]|[1]102205893-102206074[2]<==>chr11|-|[2]95978948-95979963[1]|[0]95985531-95985642[0]|[2]95991520-95991723[0]|[2]96091892-96093517[0] atggatcccgggcagcagccgccgcctcaaccggccccccagggccaagggcagccgccttcgcagcccccgcaggggcagggcccgccgtccggacccgggcaaccggcacccgcggcgacccaggcggcgccgcaggcaccccccgccgggcatcagatcgtgcacgtccgcggggactcggagaccgacctggaggcgctcttcaacgccgtcatgaaccccaagacggccaacgtgccccagaccgtgcccatgaggctccggaagctgcccgactccttcttcaagccgccggagcccaaatcccactcccgacaggccagtactgatgcaggcactgcaggagccctgactccacagcatgttcgagctcattcctctccagcttctctgcagttgggagctgtttctcctgggacactgacccccactggagtagtctctggcccagcagctacacccacagctcagcatcttcgacagtcttcttttgagatacctgatgatgtacctctgccagcaggttgggagatggcaaagacatcttctggtcagagatacttcttaaatcacatcgatcagacaacaacatggcaggaccccaggaaggccatgctgtcccagatgaacgtcacagcccccaccagtccaccagtgcagcagaatatgatgaactcggcttcaggtcctcttcctgatggatgggaacaagccatgactcaggatggagaaatttactatataaaccataagaacaagaccacctcttggctagacccaaggcttgaccctcgttttgccatgaaccagagaatcagtcagagtgctccagtgaaacagccaccacccctggctccccagagcccacagggaggcgtcatgggtggcagcaactccaaccagcagcaacagatgcgactgcagcaactgcagatggagaaggagaggctgcggctgaaacagcaagaactgcttcggcagCTCCAGGGTTCCTTGAAAAGAAAACAGGTAGTTAACCTATCTCCTGCCAACAGCAAGCGACCCAATGGCTTTGTGGACAACTCATTTCTTGATATCAAAAGAATTCGTGTTGGGGAGAATCTCTCTGCAGGACAAGGTGGCCTCCAAATAAACAATGGACAAAGTCAGATTATGTCAGGGACCTTGCCTATGAGCCAAGCACCCCTGCGAAAGACTAACACTCTGCCATCCCATACACATTCTCCTGGCAATGGCCTGTTTAACATGGGCTTAAAGGAGGTAAAGAAGGAGCCAGGAGAGACTCTGTCTTGCAGTAAGCACATGGATGGCCAAATGACCCAAGAGAATATTTTTCCTAATAGGTACGGAGACGACCCTGGAGAACAACTGATGGATCCTGAGCTGCAGGAACTGTTCAATGAACTGACCAACATATCTGTGCCTCCCATGAGTGACCTTGAACTGGAGAACATGATCAATGCCACCATAAAGCAGGATGACCCATTTAACATTGACTTGGGTCAGCAAAGCCAGAGGAGCACACCTAGGCCCTCCTTACCCATGGAGAAAATAGTGATCAAAAGTGAATACTCACCGGGCTTGACTCAGGGCCCCTCAGGCTCTCCTCAGCTGAGGCCCCCATCAGCTGGCCCCGCATTCTCCATGGCCAACTCTGCCCTCTCCACTTCGTCTCCAATCCCTTCAGTCCCTCAGAGCCAGGCTCAGCCTCAGACAGGCTCCGGAGCAAGCCGGGCCTTGCCAAGCTGGCAGGAAGTATCCCATGCCCAGCAGCTCAAACAGATAGCTGCTAATCGTCAGCAGCATGCCCGGATGCAGCAGCACCAGCAGCAGCACCAGCCTACCAACTGGTCAGCCTTGCCCTCTTCTGCTGGACCATCACCAGGTCCATTTGGGCAGGAGAAAATCCCCAGCCCTTCTTTTGGTCAGCAGACATTCAGCCCACAGAGCTCCCCCATGCCTGGGGTAGCTGGCGGCAGCGGCCAGTCGAAAGTAATGGCTAACTACATGTACAAGGCCGGCCCCTCAGCCCAGGGTGGGCACCTAGATGTCCTCATGCAGCAAAAGCCTCAGGATCTCAGTCGAAGTTTTATTAACAACCCGCACCCAGCCATGGAGCCCCGTCAGGGCAACACCAAGCCTTTGTTTCATTTTAACTCAGATCAAGCGAACCAGCAGATGCCTTCTGTTTTGCCTTCCCAGAACAAGCCTTCTCTCCTACACTACACCCAACAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAGAGTTCAATTTCAGCTCAACAACAGCAACAGCAGCAGAGCTCAATTTCAGCCCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAACAACCATCTTCTCAGCCTGCCCAATCTCTACCAAGCCAGCCTTTGCTAAGGTCACCTTTGCCACTTCAGCAAAAGCTCCTACTTCAGCAAATGCAGAATCAGCCCATTGCAGGAATGGGATACCAAGTCTCCCAACAACAGAGACAGGATCAACACTCTGTGGTAGGCCAGAACACAGGCCCCAGTCCAAGTCCTAACCCCTGCTCAAATCCAAACACTGGAAGTGGTTACATGAACTCCCAGCAATCACTGTTGAATCAGCAATTGATGGGAAAGAAGCAGACTCTACAGAGGCAGATCATGGAGCAGAAACAGCAACTTCTTCTCCAGCAGCAGATGCTGGCTGACGCGGAGAAAATTGCTCCACAAGATCAGATAAACCGACATTTGTCAAGGCCACCTCCAGATTATAAAGACCAAAGAAGAAATGTGGGCAATATGCAACCAACTGCTCAGTATTCTGGTGGCTCATCCACAATAAGCTTAAACTCTAACCAGGCTTTGGCAAACCCAGTTTCAACACACACCATTTTAACTCCCAATTCCAGCCTCCTGTCTACTTCTCACGGGACAAGAATGCCATCATTATCTACAGCAGTTCAGAATATGGGGATGTATGGAAATCTGCCTTGTAATCAACCTAACACATACAGTGTCACTTCAGGAATGAATCAATTGACCCAACAGAGAAACCCAAAGCAATTGTTAGCAAATCAAAACAACCCTATGATGCCACGGCCACCTACCTTAGGGCCAAGTAATAATAACAATGTAGCCACTTTTGGAGCTGGATCTGTTGGTAATTCACAACAATTGAGACCAAATTTAACCCATAGTATGGCAAGCATGCCACCACAGAGAACATCAAACGTAATGATCACATCCAACACAACTGCACCAAACTGGGCCTCTCAAGAAGGAACAAGCAAACAGCAAGAAGCCCTGACGTCTGCAGGAGTCCGCTTCCCCACAGGTACACCTGCAGCCTATACCCCAAATCAGTCACTGCAACAGGCAGTAGGTAGCCAGCAATTTTCCCAGAGGGCAGTGGCTCCTCCTAACCAGTTAACACCAGCAGTGCAAATGAGACCCATGAACCAAATGAGCCAAACACTAAATGGGCAAACCATGGGTCCCCTCAGGGGTCTGAATCTCAGACCCAATCAGCTAAGCACACAGATTTTGCCTAATTTGAATCAGTCAGGAACAGGGTTGAATCAGTCGAGGACGGGCATCAACCAGCCACCATCCCTGACGCCCAGCAATTTTCCTTCACCCAACCAAAGTTCCAGGGCTTTTCAAGGAACTGACCACAGCAGTGACTTAGCTTTTGACTTCCTCAGCCAACAAAATGATAACATGGGCCCTGCCCTAAACAGTGATGCTGATTTCATTGATTCTTTATTGAAGACAGAGCCTGGTAATGATGACTGGATGAAAGACATCAATCTTGATGAAATCTTGGGGAACAATTCCTAA MDPGQQPPPQPAPQGQGQPPSQPPQGQGPPSGPGQPAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRKAMLSQMNVTAPTSPPVQQNMMNSASGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRLDPRFAMNQRISQSAPVKQPPPLAPQSPQGGVMGGSNSNQQQQMRLQQLQMEKERLRLKQQELLRQLQGSLKRKQVVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPLRKTNTLPSHTHSPGNGLFNMGLKEVKKEPGETLSCSKHMDGQMTQENIFPNRYGDDPGEQLMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFNIDLGQQSQRSTPRPSLPMEKIVIKSEYSPGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGASRALPSWQEVSHAQQLKQIAANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQEKIPSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDLSRSFINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQRQDQHSVVGQNTGPSPSPNPCSNPNTGSGYMNSQQSLLNQQLMGKKQTLQRQIMEQKQQLLLQQQMLADAEKIAPQDQINRHLSRPPPDYKDQRRNVGNMQPTAQYSGGSSTISLNSNQALANPVSTHTILTPNSSLLSTSHGTRMPSLSTAVQNMGMYGNLPCNQPNTYSVTSGMNQLTQQRNPKQLLANQNNPMMPRPPTLGPSNNNNVATFGAGSVGNSQQLRPNLTHSMASMPPQRTSNVMITSNTTAPNWASQEGTSKQQEALTSAGVRFPTGTPAAYTPNQSLQQAVGSQQFSQRAVAPPNQLTPAVQMRPMNQMSQTLNGQTMGPLRGLNLRPNQLSTQILPNLNQSGTGLNQSRTGINQPPSLTPSNFPSPNQSSRAFQGTDHSSDLAFDFLSQQNDNMGPALNSDADFIDSLLKTEPGNDDWMKDINLDEILGNNS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx,Skin,Soft_tissue,Brain,Salivary_gland,Thymus no_match TRUE Skin Cutaneous Melanoma SKIN no_match 102076805|102080295 TRUE|FALSE 95826681|95826681 TRUE|TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 33825 ZNF738::SMOC2 ENSG00000172687.14::ENSG00000112562.20 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2581 FALSE NA FALSE NA ZNF738 ENSG00000172687.14 protein_coding + + chr19:21358930-21388582:+ chr19:21359143:+ chr19:21541732-21571384:+ chr19:21541945:+ SMOC2 ENSG00000112562.20 protein_coding + + chr6:168441151-168673445:+ chr6:168509915:+ chr6:168841831-169073984:+ chr6:168910595:+ chr19:21360821 chr6:168467706 NA NA chr19:21543623 chr6:168868386 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame none Thyroglobulin_1|90-153|4.4e-23^Kazal_1|111-120|5.2^Thyroglob_assoc|155-225|1.4e-30^SPARC_Ca_bdg|208-232|1.4^Spem1|213-266|0.00011^Thyroglobulin_1|227-292|4.1e-23^Spem1|324-414|0.038^SPARC_Ca_bdg|355-423|1.9e-13^EF-hand_7|363-421|5.9e-10^EF-hand_1|365-384|0.00039^EF-hand_5|366-384|0.00027^EF-hand_6|367-384|0.00026^Kazal_1|396-410|2.7^EF-hand_1|401-424|0.0004^EF-hand_6|406-424|0.00076^EF-hand_5|408-421|0.13^Thyroglob_assoc|418-451|3.3e-06 ["DepMap2023","CCLE_StarF2019"];INTERCHROMOSOMAL[chr19--chr6] 11 4 11 4 ONLY_REF_SPLICE YES_LDAS 0.1432 GT 1.8323 AG 1.5058 ENST00000594245.1 1-3 ENST00000354536.9 85-1374 chr19|+|[0]21359141-21359143[2]<==>chr6|+|[0]168509915-168510086[0]|[1]168526346-168526452[2]|[0]168527628-168527727[0]|[1]168543625-168543672[0]|[1]168547086-168547169[0]|[1]168549129-168549203[0]|[1]168598818-168599004[1]|[2]168608157-168608239[0]|[1]168650681-168650783[1]|[2]168652954-168653228[0]|[1]168664074-168664111[2]|[0]168666421-168666438[2] atgTTTTTGAGAGTGGATCAAGATAAAGACAAGGATTGTAGCTTGGACTGTGCGGGTTCGCCCCAGAAACCTCTCTGCGCATCTGACGGAAGGACCTTCCTTTCCCGTTGTGAATTTCAACGTGCCAAGTGCAAAGATCCCCAGCTAGAGATTGCATATCGAGGAAACTGCAAAGACGTGTCCAGGTGTGTGGCCGAAAGGAAGTATACCCAGGAGCAAGCCCGGAAGGAGTTTCAGCAAGTGTTCATTCCTGAGTGCAATGACGACGGCACCTACAGTCAGGTCCAGTGTCACAGCTACACGGGATACTGCTGGTGCGTCACGCCCAACGGGAGGCCCATCAGCGGCACTGCCGTGGCCCACAAGACGCCCCGGTGCCCGGGTTCCGTAAATGAAAAGTTACCCCAACGCGAAGGCACAGGAAAAACAGTCTCCTTGCAAATCTTTTCCGTTCTGAATTCAGATGATGCCGCAGCTCCAGCGTTGGAGACTCAGCCTCAAGGAGATGAAGAAGATATTGCATCACGTTACCCTACCCTTTGGACTGAACAGGTTAAAAGTCGGCAGAACAAAACCAATAAGAATTCAGTGTCATCCTGTGACCAAGAGCACCAGTCTGCCCTGGAGGAAGCCAAGCAGCCCAAGAACGACAATGTGGTGATCCCTGAGTGTGCGCACGGCGGCCTCTACAAGCCAGTGCAGTGCCACCCCTCCACGGGGTACTGCTGGTGCGTCCTGGTGGACACGGGGCGCCCCATTCCCGGCACATCCACAAGGTACGAGCAGCCGAAATGTGACAACACGGCCAGGGCCCACCCAGCCAAAGCCCGGGACCTGTACAAGGGCCGCCAGCTACAAGGTTGTCCGGGTGCCAAAAAGCATGAGTTTCTGACCAGCGTTCTGGACGCGCTGTCCACGGACATGGTCCACGCCGCCTCCGACCCCTCCTCCTCGTCAGGCAGGCTCTCAGAACCCGACCCCAGCCATACCCTAGAGGAGCGGGTGGTGCACTGGTACTTCAAACTACTGGATAAAAACTCCAGTGGAGACATCGGCAAAAAGGAAATCAAACCCTTCAAGAGGTTCCTTCGCAAAAAATCAAAGCCCAAAAAATGTGTGAAGAAGTTTGTTGAATACTGTGACGTGAATAATGACAAATCCATCTCCGTACAAGAACTGATGGGCTGCCTGGGCGTGGCGAAAGAGGACGGCAAAGCGGACACCAAGAAACGCCACACCCCCAGAGGTCATGCTGAAAGTACGTCTAATAGACAGCCAAGGAAACAAGGATAA MFLRVDQDKDKDCSLDCAGSPQKPLCASDGRTFLSRCEFQRAKCKDPQLEIAYRGNCKDVSRCVAERKYTQEQARKEFQQVFIPECNDDGTYSQVQCHSYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVNEKLPQREGTGKTVSLQIFSVLNSDDAAAPALETQPQGDEEDIASRYPTLWTEQVKSRQNKTNKNSVSSCDQEHQSALEEAKQPKNDNVVIPECAHGGLYKPVQCHPSTGYCWCVLVDTGRPIPGTSTRYEQPKCDNTARAHPAKARDLYKGRQLQGCPGAKKHEFLTSVLDALSTDMVHAASDPSSSSGRLSEPDPSHTLEERVVHWYFKLLDKNSSGDIGKKEIKPFKRFLRKKSKPKKCVKKFVEYCDVNNDKSISVQELMGCLGVAKEDGKADTKKRHTPRGHAESTSNRQPRKQG* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33826 YAP1::MAML2 ENSG00000137693.14::ENSG00000184384.15 ES2 SRR8616220 SRR8639144 OVARY carcinoma (clear_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2579 TRUE 4688 TRUE 1778 YAP1 ENSG00000137693.14 protein_coding + + chr11:102110447-102233424:+ chr11:102209564:+ chr11:101981178-102104155:+ chr11:102080295:+ MAML2 ENSG00000184384.15 protein_coding - - chr11:95976598-96343195:- chr11:96093517:- chr11:95709762-96076359:- chr11:95826681:- chr11:102220764,chr11:102220763 chr11:96109405,chr11:96109406 NA NA chr11:102091495,chr11:102091494 chr11:95842569,chr11:95842570 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame MbtH|49-62|1^MbtH|168-194|0.00014^WW|173-202|3.5e-13^MbtH|231-243|0.017^WW|232-261|2.2e-14^GspL_C|263-288|0.073^Mei4|301-361|9.5e-06^GspL_C|306-409|0.00025 Peptidase_S64|559-679|0.00071^MAML2_TAD|563-582|0.61^RR_TM4-6|573-667|0.00017^MAML2_TAD|577-614|6^MamL-1|588-621|6^Hid1|588-674|0.00011^CDC45|589-663|0.0014^MAML2_TAD|609-681|4e-17^MamL-1|639-661|6^MAML2_TAD|693-721|1.1^MAML2_TAD|745-776|6^MAML2_TAD|892-893|3.7^MAML2_TAD|999-1019|6 ["YAP1:Oncogene"];["MAML2:Oncogene"];["Klijn_CellLines","DEEPEST2019","ChimerPub","TumorFusionsNAR2018","DepMap2023","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:5.77Mb] 9 18 9 7.21 ONLY_REF_SPLICE YES_LDAS 0.1547 GT 1.9329 AG 1.8256 ENST00000615667.4 1-1044 ENST00000524717.6 514-3471 chr11|+|[0]102110849-102111169[2]|[0]102114144-102114394[1]|[2]102162456-102162571[0]|[1]102186018-102186131[0]|[1]102205893-102206086[2]|[0]102209517-102209564[2]<==>chr11|-|[2]95978948-95979963[1]|[0]95985531-95985642[0]|[2]95991520-95991723[0]|[2]96091892-96093517[0] atggatcccgggcagcagccgccgcctcaaccggccccccagggccaagggcagccgccttcgcagcccccgcaggggcagggcccgccgtccggacccgggcaaccggcacccgcggcgacccaggcggcgccgcaggcaccccccgccgggcatcagatcgtgcacgtccgcggggactcggagaccgacctggaggcgctcttcaacgccgtcatgaaccccaagacggccaacgtgccccagaccgtgcccatgaggctccggaagctgcccgactccttcttcaagccgccggagcccaaatcccactcccgacaggccagtactgatgcaggcactgcaggagccctgactccacagcatgttcgagctcattcctctccagcttctctgcagttgggagctgtttctcctgggacactgacccccactggagtagtctctggcccagcagctacacccacagctcagcatcttcgacagtcttcttttgagatacctgatgatgtacctctgccagcaggttgggagatggcaaagacatcttctggtcagagatacttcttaaatcacatcgatcagacaacaacatggcaggaccccaggaaggccatgctgtcccagatgaacgtcacagcccccaccagtccaccagtgcagcagaatatgatgaactcggcttcaggtcctcttcctgatggatgggaacaagccatgactcaggatggagaaatttactatataaaccataagaacaagaccacctcttggctagacccaaggcttgaccctcgttttgccatgaaccagagaatcagtcagagtgctccagtgaaacagccaccacccctggctccccagagcccacagggaggcgtcatgggtggcagcaactccaaccagcagcaacagatgcgactgcagcaactgcagatggagaaggagaggctgcggctgaaacagcaagaactgcttcggcaggtgaggccacaggcaatgcggaatatcaatcccagcacagcaaattctccaaaatgtcagCTCCAGGGTTCCTTGAAAAGAAAACAGGTAGTTAACCTATCTCCTGCCAACAGCAAGCGACCCAATGGCTTTGTGGACAACTCATTTCTTGATATCAAAAGAATTCGTGTTGGGGAGAATCTCTCTGCAGGACAAGGTGGCCTCCAAATAAACAATGGACAAAGTCAGATTATGTCAGGGACCTTGCCTATGAGCCAAGCACCCCTGCGAAAGACTAACACTCTGCCATCCCATACACATTCTCCTGGCAATGGCCTGTTTAACATGGGCTTAAAGGAGGTAAAGAAGGAGCCAGGAGAGACTCTGTCTTGCAGTAAGCACATGGATGGCCAAATGACCCAAGAGAATATTTTTCCTAATAGGTACGGAGACGACCCTGGAGAACAACTGATGGATCCTGAGCTGCAGGAACTGTTCAATGAACTGACCAACATATCTGTGCCTCCCATGAGTGACCTTGAACTGGAGAACATGATCAATGCCACCATAAAGCAGGATGACCCATTTAACATTGACTTGGGTCAGCAAAGCCAGAGGAGCACACCTAGGCCCTCCTTACCCATGGAGAAAATAGTGATCAAAAGTGAATACTCACCGGGCTTGACTCAGGGCCCCTCAGGCTCTCCTCAGCTGAGGCCCCCATCAGCTGGCCCCGCATTCTCCATGGCCAACTCTGCCCTCTCCACTTCGTCTCCAATCCCTTCAGTCCCTCAGAGCCAGGCTCAGCCTCAGACAGGCTCCGGAGCAAGCCGGGCCTTGCCAAGCTGGCAGGAAGTATCCCATGCCCAGCAGCTCAAACAGATAGCTGCTAATCGTCAGCAGCATGCCCGGATGCAGCAGCACCAGCAGCAGCACCAGCCTACCAACTGGTCAGCCTTGCCCTCTTCTGCTGGACCATCACCAGGTCCATTTGGGCAGGAGAAAATCCCCAGCCCTTCTTTTGGTCAGCAGACATTCAGCCCACAGAGCTCCCCCATGCCTGGGGTAGCTGGCGGCAGCGGCCAGTCGAAAGTAATGGCTAACTACATGTACAAGGCCGGCCCCTCAGCCCAGGGTGGGCACCTAGATGTCCTCATGCAGCAAAAGCCTCAGGATCTCAGTCGAAGTTTTATTAACAACCCGCACCCAGCCATGGAGCCCCGTCAGGGCAACACCAAGCCTTTGTTTCATTTTAACTCAGATCAAGCGAACCAGCAGATGCCTTCTGTTTTGCCTTCCCAGAACAAGCCTTCTCTCCTACACTACACCCAACAGCAACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAGAGTTCAATTTCAGCTCAACAACAGCAACAGCAGCAGAGCTCAATTTCAGCCCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAACAACCATCTTCTCAGCCTGCCCAATCTCTACCAAGCCAGCCTTTGCTAAGGTCACCTTTGCCACTTCAGCAAAAGCTCCTACTTCAGCAAATGCAGAATCAGCCCATTGCAGGAATGGGATACCAAGTCTCCCAACAACAGAGACAGGATCAACACTCTGTGGTAGGCCAGAACACAGGCCCCAGTCCAAGTCCTAACCCCTGCTCAAATCCAAACACTGGAAGTGGTTACATGAACTCCCAGCAATCACTGTTGAATCAGCAATTGATGGGAAAGAAGCAGACTCTACAGAGGCAGATCATGGAGCAGAAACAGCAACTTCTTCTCCAGCAGCAGATGCTGGCTGACGCGGAGAAAATTGCTCCACAAGATCAGATAAACCGACATTTGTCAAGGCCACCTCCAGATTATAAAGACCAAAGAAGAAATGTGGGCAATATGCAACCAACTGCTCAGTATTCTGGTGGCTCATCCACAATAAGCTTAAACTCTAACCAGGCTTTGGCAAACCCAGTTTCAACACACACCATTTTAACTCCCAATTCCAGCCTCCTGTCTACTTCTCACGGGACAAGAATGCCATCATTATCTACAGCAGTTCAGAATATGGGGATGTATGGAAATCTGCCTTGTAATCAACCTAACACATACAGTGTCACTTCAGGAATGAATCAATTGACCCAACAGAGAAACCCAAAGCAATTGTTAGCAAATCAAAACAACCCTATGATGCCACGGCCACCTACCTTAGGGCCAAGTAATAATAACAATGTAGCCACTTTTGGAGCTGGATCTGTTGGTAATTCACAACAATTGAGACCAAATTTAACCCATAGTATGGCAAGCATGCCACCACAGAGAACATCAAACGTAATGATCACATCCAACACAACTGCACCAAACTGGGCCTCTCAAGAAGGAACAAGCAAACAGCAAGAAGCCCTGACGTCTGCAGGAGTCCGCTTCCCCACAGGTACACCTGCAGCCTATACCCCAAATCAGTCACTGCAACAGGCAGTAGGTAGCCAGCAATTTTCCCAGAGGGCAGTGGCTCCTCCTAACCAGTTAACACCAGCAGTGCAAATGAGACCCATGAACCAAATGAGCCAAACACTAAATGGGCAAACCATGGGTCCCCTCAGGGGTCTGAATCTCAGACCCAATCAGCTAAGCACACAGATTTTGCCTAATTTGAATCAGTCAGGAACAGGGTTGAATCAGTCGAGGACGGGCATCAACCAGCCACCATCCCTGACGCCCAGCAATTTTCCTTCACCCAACCAAAGTTCCAGGGCTTTTCAAGGAACTGACCACAGCAGTGACTTAGCTTTTGACTTCCTCAGCCAACAAAATGATAACATGGGCCCTGCCCTAAACAGTGATGCTGATTTCATTGATTCTTTATTGAAGACAGAGCCTGGTAATGATGACTGGATGAAAGACATCAATCTTGATGAAATCTTGGGGAACAATTCCTAA MDPGQQPPPQPAPQGQGQPPSQPPQGQGPPSGPGQPAPAATQAAPQAPPAGHQIVHVRGDSETDLEALFNAVMNPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQRYFLNHIDQTTTWQDPRKAMLSQMNVTAPTSPPVQQNMMNSASGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRLDPRFAMNQRISQSAPVKQPPPLAPQSPQGGVMGGSNSNQQQQMRLQQLQMEKERLRLKQQELLRQVRPQAMRNINPSTANSPKCQLQGSLKRKQVVNLSPANSKRPNGFVDNSFLDIKRIRVGENLSAGQGGLQINNGQSQIMSGTLPMSQAPLRKTNTLPSHTHSPGNGLFNMGLKEVKKEPGETLSCSKHMDGQMTQENIFPNRYGDDPGEQLMDPELQELFNELTNISVPPMSDLELENMINATIKQDDPFNIDLGQQSQRSTPRPSLPMEKIVIKSEYSPGLTQGPSGSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGASRALPSWQEVSHAQQLKQIAANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQEKIPSPSFGQQTFSPQSSPMPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDLSRSFINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQQQQQQQQQQQQQQQQQQPSSQPAQSLPSQPLLRSPLPLQQKLLLQQMQNQPIAGMGYQVSQQQRQDQHSVVGQNTGPSPSPNPCSNPNTGSGYMNSQQSLLNQQLMGKKQTLQRQIMEQKQQLLLQQQMLADAEKIAPQDQINRHLSRPPPDYKDQRRNVGNMQPTAQYSGGSSTISLNSNQALANPVSTHTILTPNSSLLSTSHGTRMPSLSTAVQNMGMYGNLPCNQPNTYSVTSGMNQLTQQRNPKQLLANQNNPMMPRPPTLGPSNNNNVATFGAGSVGNSQQLRPNLTHSMASMPPQRTSNVMITSNTTAPNWASQEGTSKQQEALTSAGVRFPTGTPAAYTPNQSLQQAVGSQQFSQRAVAPPNQLTPAVQMRPMNQMSQTLNGQTMGPLRGLNLRPNQLSTQILPNLNQSGTGLNQSRTGINQPPSLTPSNFPSPNQSSRAFQGTDHSSDLAFDFLSQQNDNMGPALNSDADFIDSLLKTEPGNDDWMKDINLDEILGNNS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Nasopharynx,Skin,Soft_tissue,Brain,Salivary_gland,Thymus no_match TRUE Skin Cutaneous Melanoma SKIN no_match 102076805|102080295 FALSE|TRUE 95826681|95826681 TRUE|TRUE YES In-frame FALSE NA NA NA NA NA NA NA TRUE Yes-associated protein 1 1 Yes cervical carcinoma, glioblastoma, meningioma epithelial, other fusion, oncogene amplification, translocation TRUE mastermind-like 2 (Drosophila) 1 salivary gland mucoepidermoid epithelial oncogene, fusion translocation 33830 TUBD1::CLTC ENSG00000108423.15::ENSG00000141367.13 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2583 FALSE NA FALSE NA TUBD1 ENSG00000108423.15 protein_coding - - chr17:59859479-59892945:- chr17:59878103:- chr17:57936840-57970306:- chr17:57955464:- CLTC ENSG00000141367.13 protein_coding + + chr17:59619684-59696956:+ chr17:59693728:+ chr17:57697045-57774317:+ chr17:57771089:+ chr17:59875632,chr17:59875638 chr17:59692433,chr17:59692427 NA NA chr17:57952993,chr17:57952999 chr17:57769794,chr17:57769788 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame Tubulin|2-213|1.4e-58^Tubulin_2|131-167|1e-07 none ["CLTC:Oncogene"];["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr17:0.16Mb] 6 11 6 11 ONLY_REF_SPLICE YES_LDAS 0.4233 GT 1.8892 AG 1.9656 ENST00000325752.8 1-769 ENST00000700709.1 4919-5043 chr17|-|[0]59878103-59878334[0]|[2]59880894-59881110[2]|[1]59886083-59886230[1]|[0]59890831-59891002[0]<==>chr17|+|[1]59693728-59693852[2] atgtcaattgtaacagtgcaacttggtcagtgtggcaatcagattggttttgaagtttttgatgctttgcttagtgactcacacagttcccagggactctgctctatgagagagaatgaggcatatcaagcatcttgcaaagaaagattcttcagtgaggaggagaatggagttccaattgcccgggctgttcttgttgacatggaacccaaagttatcaatcaaatgctgtcaaaggctgcccagtctggccaatggaaatatggtcaacatgcatgcttctgtcaaaaacaaggttctggaaacaactgggcatatggttactctgttcatggacccaggcatgaagaatctataatgaacataatccggaaggaagtggagaaatgtgactctttcagtggttttttcatcataatgagtatggctgggggcacaggatcaggattaggagctttcgttacacagaatttagaagatcagtactcaaactcattgaaaatgaatcagattatttggccttatggaactggtgaggttattgttcaaaactacaactccattttgacactttctcacttgtaccgatcttcagacgccctccttcttcatgagaatgatgccatccataagatctgtgcaaaactgatgaatatcaagcagatctcctttagtgatatcaatcaagtcctcgcacatcagctgggaagtgtgttccagcctacttattctgcagaaagctcatttcactacagacgaaatccactagGTCAGCCCCAGTTGATGCTGACAGCAGGACCCAGTGTTGCCGTCCCTCCCCAGGCACCTTTTGGTTATGGTTATACCGCACCACCGTATGGACAGCCACAGCCTGGCTTTGGGTACAGCATGTGA MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGYSM* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA TRUE clathrin, heavy polypeptide (Hc) 1 Yes ALCL, renal leukaemia_lymphoma TSG, fusion translocation 33831 PPP6R3::ASRGL1 ENSG00000110075.15::ENSG00000162174.12 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE TRUE 2584 FALSE NA FALSE NA PPP6R3 ENSG00000110075.15 protein_coding + + chr11:68460731-68615334:+ chr11:68460827:+ chr11:68228199-68382802:+ chr11:68228295:+ ASRGL1 ENSG00000162174.12 protein_coding + + chr11:62337448-62393412:+ chr11:62389133:+ chr11:62104920-62160884:+ chr11:62156605:+ chr11:68476299,chr11:68476296 chr11:62368519,chr11:62368513 NA NA chr11:68243767,chr11:68243764 chr11:62135991,chr11:62135985 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr11:6.07Mb] 5 0 5 0 ONLY_REF_SPLICE YES_LDAS 0.1245 GT 1.8323 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33834 GLG1::LINC01572 ENSG00000090863.12::ENSG00000261008.9 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA GLG1 ENSG00000090863.12 protein_coding - - chr16:74447427-74607144:- chr16:74606657:- chr16:74481325-74641042:- chr16:74640555:- LINC01572 ENSG00000261008.9 lncRNA - - chr16:72236281-72665014:- chr16:72523415:- chr16:72270180-72698913:- chr16:72557314:- chr16:74581064,chr16:74581066 chr16:72552346,chr16:72552345 NA NA chr16:74614962,chr16:74614964 chr16:72586245,chr16:72586244 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["CCLE_StarF2019"];INTRACHROMOSOMAL[chr16:1.78Mb] 5 0 5 0 ONLY_REF_SPLICE YES_LDAS 0.1245 GT 1.6402 AG 1.9656 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33836 RPS6KB1::VMP1 ENSG00000108443.14::ENSG00000062716.13 VMCUB1 SRR8618300 SRR8670722 URINARY_TRACT carcinoma (transitional_cell_carcinoma) primary star-fusion TRUE FALSE FALSE NA FALSE NA FALSE NA RPS6KB1 ENSG00000108443.14 protein_coding + + chr17:59893046-59950574:+ chr17:59945518:+ chr17:57970407-58027935:+ chr17:58022879:+ VMP1 ENSG00000062716.13 protein_coding + + chr17:59707192-59842255:+ chr17:59838295:+ chr17:57784553-57919616:+ chr17:57915656:+ NA NA NA NA NA NA NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame FTA2|90-151|0.015^Pkinase|91-352|2.5e-74^PK_Tyr_Ser-Thr|92-335|5.7e-40^Kinase-like|96-126|0.62^DUF1015|107-134|0.64^ABC1|166-242|6e-07^DUF1015|173-215|0.00014^FTA2|200-225|0.0013^Kinase-like|207-335|7.5e-11^Pkinase_fungal|207-275|5.5e-08^Pkinase_C|373-413|1.4e-14^Pkinase|404-421|1.5 none ["DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019","YOSHIHARA_TCGA","DEEPEST2019","Klijn_CellLines","TumorFusionsNAR2018"];INTRACHROMOSOMAL[chr17:0.05Mb];LOCAL_REARRANGEMENT:+:[50791] 5 1 5 1 ONLY_REF_SPLICE YES_LDAS 0.1494 GT 1.9086 AG 1.8062 ENST00000406116.7 1-1340 ENST00000262291.9 975-1221 chr17|+|[0]59893185-59893325[2]|[0]59910562-59910611[1]|[2]59912684-59912804[2]|[0]59914635-59914703[2]|[0]59926435-59926582[0]|[1]59930117-59930174[1]|[2]59931622-59931722[0]|[1]59934170-59934260[1]|[2]59934434-59934524[2]|[0]59935193-59935300[2]|[0]59936215-59936277[2]|[0]59936464-59936541[2]|[0]59940836-59940943[2]|[0]59945406-59945518[1]<==>chr17|+|[2]59838295-59838397[2]|[0]59839768-59839911[2] atgaggcgacgaaggaggcgggacggcttttacccagccccggacttccgagacagggaagctgaggacatggcaggagtgtttgacatagacctggaccagccagaggacgcgggctctgaggatgagctggaggaggggggtcagttaaatgaaagcatggaccatgggggagttggaccatatgaacttggcatggaacattgtgagaaatttgaaatctcagaaactagtgtgaacagagggccagaaaaaatcagaccagaatgttttgagctacttcgggtacttggtaaagggggctatggaaaggtttttcaagtacgaaaagtaacaggagcaaatactgggaaaatatttgccatgaaggtgcttaaaaaggcaatgatagtaagaaatgctaaagatacagctcatacaaaagcagaacggaatattctggaggaagtaaagcatcccttcatcgtggatttaatttatgcctttcagactggtggaaaactctacctcatccttgagtatctcagtggaggagaactatttatgcagttagaaagagagggaatatttatggaagacactgcctgcttttacttggcagaaatctccatggctttggggcatttacatcaaaaggggatcatctacagagacctgaagccggagaatatcatgcttaatcaccaaggtcatgtgaaactaacagactttggactatgcaaagaatctattcatgatggaacagtcacacacacattttgtggaacaatagaatacatggcccctgaaatcttgatgagaagtggccacaatcgtgctgtggattggtggagtttgggagcattaatgtatgacatgctgactggagcacccccattcactggggagaatagaaagaaaacaattgacaaaatcctcaaatgtaaactcaatttgcctccctacctcacacaagaagccagagatctgcttaaaaagctgctgaaaagaaatgctgcttctcgtctgggagctggtcctggggacgctggagaagttcaagctcatccattctttagacacattaactgggaagaacttctggctcgaaaggtggagcccccctttaaacctctgttgcaatctgaagaggatgtaagtcagtttgattccaagtttacacgtcagacacctgtcgacagcccagatgactcaactctcagtgaaagtgccaatcaggtctttctgggttttacatatgtggctccatctgtacttgaaagtgtgaaagaaaagttttcctttgaaccaaaaatccgatcacctcgaagatttattggcagcccacgaacacctgtcagTGCTGTCCCCGGCATAGGTCCATCTCTGCAGAAGCCATTTCAGGAGTACCTGGAGGCTCAACGGCAGAAGCTTCACCACAAAAGCGAAATGGGCACACCACAGGGAGAAAACTGGTTGTCCTGGATGTTTGAAAAGTTGGTCGTTGTCATGGTGTGTTACTTCATCCTATCTATCATTAACTCCATGGCACAAAGTTATGCCAAACGAATCCAGCAGCGGTTGAACTCAGAGGAGAAAACTAAATAA MRRRRRRDGFYPAPDFRDREAEDMAGVFDIDLDQPEDAGSEDELEEGGQLNESMDHGGVGPYELGMEHCEKFEISETSVNRGPEKIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSFEPKIRSPRRFIGSPRTPVSAVPGIGPSLQKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYAKRIQQRLNSEEKTK* FALSE FALSE NA NA TRUE hsa-mir-21 chr17:59841266-59841337:+ FALSE NA NA TRUE TRUE Ribosomal protein S6 kinase beta-1 AGC RSK RSKp70 P23443 FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Uterus_corpus no_match TRUE Ovarian serous cystadenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Bladder Urothelial Carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung adenocarcinoma,Lung squamous cell carcinoma,Breast invasive carcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Cervical squamous cell carcinoma and endocervical adenocarcinoma,Head and Neck squamous cell carcinoma,Head and Neck squamous cell carcinoma,Breast invasive carcinoma,Skin Cutaneous Melanoma,Breast invasive carcinoma,Bladder Urothelial Carcinoma,Stomach adenocarcinoma,Breast invasive carcinoma,Head and Neck squamous cell carcinoma,Bladder Urothelial Carcinoma,Skin Cutaneous Melanoma OVARY,LUNG,LUNG,BLADDER,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,LUNG,BREAST,BREAST,HEAD_AND_NECK,BREAST,CERVIX,HEAD_AND_NECK,HEAD_AND_NECK,BREAST,SKIN,BREAST,BLADDER,STOMACH,BREAST,HEAD_AND_NECK,BLADDER,SKIN inexact 57970686|57971285,57990165,58013902,57992064|57987972|57992064|57970686,58007535|57990165,57970686|57987972|57971285,57990165|57992064|57970686,57970686|57971285,57970686,58003943|57992064|57990165,57970686,57992064|57990165,57992064|57990165|57992064,57987972|57970686|58012661,57992064|57990165,57990165|57987972,57992064,58009083,57992064,57970686|57971285|57970686,57970686|57970686,57970686|57970686,57970686,57970686|57971285,57970686|57971285|57970686,57970686|57971285,57990165|57970686|58009083,57992064,57990165|57987972|57970686 FALSE|FALSE,FALSE,FALSE,FALSE|FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE,FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE,FALSE|FALSE|FALSE 57886157|57886157,57915656,57915656,57917129|57915656|57889031|57889031,57915656|57886157,57886157|57886157|57886157,57886157|57886157|57814814,57915656|57915656,57886157,57917129|57917129|57917129,57915656,57842332|57842332,57889031|57886157|57886157,57886157|57886157|57886157,57915656|57915656,57915656|57915656,57915656,57895073,57915656,57915656|57915656|57886157,57842332|57851115,57886157|57889031,57842332,57886157|57886157,57886157|57886157|57889031,57915656|57915656,57886157|57886157|57915656,57915656,57915656|57915656|57915656 FALSE|FALSE,TRUE,TRUE,FALSE|TRUE|FALSE|FALSE,TRUE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE,FALSE|FALSE|FALSE,TRUE,FALSE|FALSE,FALSE|FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,TRUE|TRUE,TRUE,FALSE,TRUE,TRUE|TRUE|FALSE,FALSE|FALSE,FALSE|FALSE,FALSE,FALSE|FALSE,FALSE|FALSE|FALSE,TRUE|TRUE,FALSE|FALSE|TRUE,TRUE,TRUE|TRUE|TRUE PARTIALLY,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY,YES,YES,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,PARTIALLY,PARTIALLY,YES,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,YES,PARTIALLY,PARTIALLY,PARTIALLY,YES,PARTIALLY In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,Out-of-frame,In-frame,In-frame,In-frame,In-frame,In-frame,Out-of-frame,In-frame,Out-of-frame,Out-of-frame FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33841 SREK1::HOMER1 ENSG00000153914.16::ENSG00000152413.15 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2586 FALSE NA FALSE NA SREK1 ENSG00000153914.16 protein_coding + + chr5:66139971-66183615:+ chr5:66164897:+ chr5:65435799-65479443:+ chr5:65460725:+ HOMER1 ENSG00000152413.15 protein_coding - - chr5:79372636-79514134:- chr5:79457018:- chr5:78668459-78809957:- chr5:78752841:- chr5:66169116,chr5:66169087 chr5:79479722,chr5:79479745 NA NA chr5:65464944,chr5:65464915 chr5:78775545,chr5:78775568 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame RRM_5|14-50|0.02^RRM_occluded|19-56|0.00031^RRM_1|23-86|5.6e-10^RRM_occluded|182-253|0.00064^RRM_1|184-252|5e-17^RRM_5|184-262|5.2e-06 WH1-PARTIAL|~6-106|4e-37^FAP206|89-116|0.026^EzrA|93-109|2^Nuf2_DHR10-like|94-122|0.35^Laminin_II|96-119|5.4^CENP-F_leu_zip|101-122|2.4^CALCOCO1|102-120|3^Crescentin|103-120|5.4^TMF_TATA_bd|104-123|3.3^DUF2968|104-126|2.5^GAS|106-121|7.1^APG6_N|108-122|8.8^IFT57|109-320|0.027^HMMR_N|111-120|8.8^Macoilin|111-228|0.088^ATG16|143-273|9.6e-05^FPP|152-320|0.0074^EzrA|174-230|0.042^FUSC|174-333|5e-05^FUT8_N_cat|176-337|0.0047^BLOC1_2|177-264|1.2e-05^FAP206|178-263|0.071^Crescentin|180-327|5.7e-06^GAS|181-318|6e-07^DUF1664|181-233|0.023^APG6_N|181-251|0.018^CALCOCO1|181-350|0.00019^DUF4164|181-214|0.084^DAHL|182-350|4.3e-05^Tropomyosin|182-331|0.02^Phlebovirus_NSM|182-214|3.1^FlaC_arch|184-209|6^DUF4763|184-233|0.0024^Nuf2_DHR10-like|185-230|0.018^CENP-F_leu_zip|185-235|0.048^FAP206|188-231|0.26^Fmp27_WPPW|194-243|0.35^DUF1465|196-258|0.0005^DUF948|196-242|0.17^HMMR_N|200-343|3.2e-06^Nsp1_C|202-277|0.0043^Laminin_II|202-282|0.00044^TMF_TATA_bd|203-278|0.024^Phage_GP20|203-225|0.3^Fzo_mitofusin|204-294|0.0044^NPV_P10|205-261|0.0015^DUF2968|205-283|0.029^FlaC_arch|208-233|0.8^Phage_GP20|208-263|0.78^DUF5798|208-233|0.17^CENP-F_leu_zip|209-342|0.00085^CCDC138_cc|211-228|0.33^Prominin|217-318|0.0091^DUF4164|219-277|0.18^XhlA|222-261|0.17^FlaC_arch|231-261|0.018^EzrA|232-329|1.9e-06^DUF5798|232-282|0.00052^Fmp27_WPPW|233-320|0.011^APG6_N|237-328|0.0014^FAP206|238-316|0.0037^Macoilin|238-338|0.00086^Nuf2_DHR10-like|239-329|0.00041^DUF4164|239-315|0.0023^ATG16|240-329|0.073^DUF1664|240-310|0.00084^XhlA|246-276|0.89^DUF4763|247-332|0.33^Phage_GP20|247-334|0.033^Laminin_II|248-324|0.018^DUF948|248-294|0.036^Phlebovirus_NSM|249-333|0.01^TMF_TATA_bd|250-350|0.00045^CCDC138_cc|252-267|3.3^FlaC_arch|253-279|0.81^Nsp1_C|257-321|0.066^BLOC1_2|265-302|0.26^DUF1465|265-334|0.037^CCDC138_cc|268-321|0.00028^Fzo_mitofusin|278-333|0.03^DUF1664|279-330|0.0078^NPV_P10|279-305|0.17^DUF2968|288-327|0.0013^XhlA|288-329|0.00069^DUF5798|289-324|0.54^BLOC1_2|297-346|0.022^FlaC_arch|299-329|0.0077^DUF948|301-349|0.17 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:13.19Mb] 12 4 12 4 ONLY_REF_SPLICE YES_LDAS 0.2684 GT 1.4716 AG 1.9329 ENST00000334121.11 1-1001 ENST00000334082.11 6-1065 chr5|+|[0]66144377-66144537[1]|[2]66153463-66153596[0]|[1]66159219-66159334[2]|[0]66162109-66162273[2]|[0]66162414-66162592[1]|[2]66163792-66163922[0]|[1]66164783-66164897[1]<==>chr5|-|[2]79376009-79376197[0]|[2]79396823-79396903[0]|[2]79397527-79397637[0]|[2]79401899-79402055[2]|[1]79439010-79439149[0]|[2]79447053-79447145[0]|[2]79450990-79451121[0]|[2]79456862-79457018[2] atgaacagcggcggcggcttcggtttgggcttaggcttcggcctcacccccacgtcggtgattcaggtgacgaatctgtcgtcggcggtgaccagcgagcagatgcggacgcttttttccttcctaggagaaatcgaggagctgcggctctaccccccggacaacgcacctcttgctttttcctccaaagtatgttatgttaagtttcgtgatccatcaagtgttggcgtggcccagcatctaactaacacggtttttattgacagagctctgatagttgttccttgtgcagaaggtaaaatcccagaggaatccaaagccctctctttattggctcctgctccaaccatgacaagtctgatgcctggtgcaggattgcttccaataccgaccccaaatcctttgactactcttggtgtttcacttagcagtttgggagctataccagcagcagcactagaccccaacattgcaacacttggagagataccacagccaccacttatgggaaacgtggatccttccaaaatagatgaaattaggagaacggtttatgttggaaatctgaattcccagacaacgacagctgatcaactacttgaattttttaaacaagttggagaagtgaagtttgtgcggatggcaggtgatgagactcagccaactcggtttgcttttgtggaatttgcagaccaaaattctgtaccaagggcccttgcttttaatggagttatgtttggagacaggccactgaaaataaatcactccaacaatgcaatagtaaaaccccctgagatgacacctcaggctgcagctaaggagttagaagaagtaatgaagcgagtacgagaagctcagtcatttatctcagcagctattgaaccagagtctggaaagagcaatgaaagaaaaggcggtcgatctcgttcccatactcgctcaaaatccaggtctagctcaaaatcccattctagaaggaaaagatcacaatcaaaacacagGGAACAACCTATCTTCAGCACTCGAGCTCATGTCTTCCAAATTGACCCAAACACAAAGAAGAACTGGGTACCCACCAGCAAGCATGCAGTTACTGTGTCTTATTTCTATGACAGCACAAGAAATGTGTATAGGATAATCAGTTTAGATGGCTCAAAGGCAATAATAAATAGTACCATCACCCCAAACATGACATTTACTAAAACATCTCAGAAGTTTGGCCAGTGGGCTGATAGCCGGGCAAACACCGTTTATGGATTGGGATTCTCCTCTGAGCATCATCTTTCGAAATTTGCAGAAAAGTTTCAGGAATTTAAAGAAGCTGCTCGACTAGCAAAGGAAAAATCACAAGAGAAGATGGAACTTACCAGTACACCTTCACAGGAATCCGCAGGCGGGGATCTTCAGTCTCCTTTAACACCGGAAAGTATCAACGGGACAGATGATGAAAGAACACCTGATGTGACACAGAACTCAGAGCCAAGGGCTGAACCAACTCAGAATGCATTGCCATTTTCACATAGTTCAGCAATCAGCAAACATTGGGAGGCTGAACTGGCTACCCTCAAAGGAAATAATGCCAAACTCACTGCAGCCCTGCTGGAGTCCACTGCCAATGTGAAACAATGGAAACAGCAACTTGCTGCCTATCAAGAGGAAGCAGAACGTCTGCACAAGCGGGTGACTGAACTTGAATGTGTTAGTAGCCAAGCAAATGCAGTACATACTCATAAGACAGAATTAAATCAGACAATACAAGAACTGGAAGAGACACTGAAACTGAAGGAAGAGGAAATAGAAAGGTTAAAACAAGAAATTGATAATGCCAGAGAACTACAAGAACAGAGGGATTCTTTGACTCAGAAACTACAGGAAGTAGAAATTCGGAACAAAGACCTGGAGGGACAACTGTCTGACTTAGAGCAACGTCTGGAGAAAAGTCAGAATGAACAAGAAGCTTTTCGCAATAACCTGAAGACACTCTTAGAAATTCTGGATGGAAAGATATTTGAACTAACAGAATTACGAGATAACTTGGCCAAGCTACTAGAATGCAGCTAA MNSGGGFGLGLGFGLTPTSVIQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEESKALSLLAPAPTMTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHREQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANAVHTHKTELNQTIQELEETLKLKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKLLECS* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33842 MICOS10::RCC2 ENSG00000173436.15::ENSG00000179051.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2592 FALSE NA FALSE NA MICOS10 ENSG00000173436.15 protein_coding + + chr1:19484403-19629821:+ chr1:19597109:+ chr1:19810897-19956315:+ chr1:19923603:+ RCC2 ENSG00000179051.14 protein_coding - - chr1:17406760-17439677:- chr1:17429199:- chr1:17733256-17766173:- chr1:17755695:- chr1:19603521,chr1:19603600,chr1:19603601 chr1:17436986,chr1:17436986,chr1:17436985 NA NA chr1:19930015,chr1:19930094,chr1:19930095 chr1:17763482,chr1:17763482,chr1:17763481 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA out-of-frame DUF543|2-62|3.4e-30 RCC1-PARTIAL|~286-345|3.1e-13^RCC1_2|332-360|1.2e-12^RCC1|350-399|5.5e-13^RCC1_2|388-410|0.21^RCC1|414-440|0.011^RCC1_2|432-440|0.61^RCC1|452-499|4.2e-05^RCC1_2|488-502|0.00014 ["RCC2:Oncogene"] 10 0 10 0 ONLY_REF_SPLICE YES_LDAS 0.1678 GT 1.8892 AG 1.8892 ENST00000322753.7 1-64 ENST00000375436.9 286-1569 chr1|+|[0]19597046-19597109[0]<==>chr1|-|[2]17409090-17409194[0]|[2]17409974-17410051[0]|[2]17412122-17412194[2]|[1]17413073-17413178[1]|[0]17413537-17413717[0]|[2]17416480-17416646[1]|[0]17420714-17420828[0]|[2]17422203-17422291[1]|[0]17422705-17422836[1]|[0]17425541-17425684[1]|[0]17429106-17429199[0] atgtctgagtcggagctcggcaggaagtgggaccggtgtctggcggatgcggtcgtgaagatagAAACTTGAAGGGTCAAAGTGCAAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGTCGAAAAGAAGTGCCTAAACAGCAAGCTGCTTACCGCAATCTCGGTCAGAATTTGTGGGGGCCCCACAGATATGGGTGCCTGGCGGGGGTCCGGGTGCGGACAGTGGTCTCGGGCTCGTGTGCTGCACACAGCCTCCTCATCACCACGGAAGGGAAGCTGTGGAGCTGGGGTCGAAATGAGAAGGGGCAGCTGGGACATGGTGACACCAAGAGAGTAGAAGCCCCTAGACTCATCGAGGGTCTTAGCCACGAAGTGATTGTGTCTGCAGCATGTGGGCGGAACCACACCTTGGCCTTGACGGAAACGGGCTCCGTGTTTGCGTTTGGGGAAAACAAGATGGGGCAGCTGGGCCTTGGCAACCAGACAGACGCTGTTCCCAGCCCCGCGCAGATAATGTACAACGGCCAGCCAATTACCAAAATGGCCTGTGGGGCTGAATTCAGTATGATAATGGACTGCAAAGGAAACCTCTATTCCTTTGGGTGCCCTGAATATGGTCAGCTGGGACACAACTCAGATGGGAAGTTCATCGCCCGGGCACAGCGGATAGAGTACGACTGTGAACTAGTTCCCCGGCGAGTGGCCATCTTCATTGAGAAGACGAAAGATGGACAGATTCTGCCTGTACCAAACGTGGTTGTACGAGACGTGGCCTGTGGCGCTAACCACACGCTGGTCCTGGACTCCCAGAAGCGAGTCTTCTCCTGGGGCTTTGGTGGCTATGGCCGGCTGGGCCACGCAGAGCAGAAGGATGAGATGGTCCCCCGCCTGGTGAAGCTGTTTGACTTCCCTGGGCGTGGGGCTTCCCAGATCTATGCTGGTTACACCTGCTCCTTTGCTGTCAGTGAAGTGGGTGGTCTGTTTTTCTGGGGGGCCACCAACACCTCCCGTGAATCTACCATGTACCCAAAAGCAGTGCAGGACCTCTGCGGCTGGAGAATCCGGAGCCTGGCTTGTGGGAAGAGCAGCATCATTGTGGCCGCCGATGAGAGCACCATCAGCTGGGGTCCGTCACCGACCTTTGGGGAACTGGGCTACGGGGACCACAAGCCCAAGTCTTCCACTGCAGCCCAGGAGGTAAAGACTCTGGATGGCATTTTCTCAGAGCAGGTCGCCATGGGCTACTCACACTCCTTGGTGATAGCAAGAGATGAAAGTGAGACTGAGAAAGAGAAGATCAAGAAACTGCCAGAATACAACCCCCGAACCCTCTGA MSESELGRKWDRCLADAVVKIET*RVKVQRAAFDFWGNQLGLDWSKRSA*TASCLPQSRSEFVGAPQIWVPGGGPGADSGLGLVCCTQPPHHHGREAVELGSK*EGAAGTW*HQESRSP*THRGS*PRSDCVCSMWAEPHLGLDGNGLRVCVWGKQDGAAGPWQPDRRCSQPRADNVQRPANYQNGLWG*IQYDNGLQRKPLFLWVP*IWSAGTQLRWEVHRPGTADRVRL*TSSPASGHLH*EDERWTDSACTKRGCTRRGLWR*PHAGPGLPEASLLLGLWWLWPAGPRRAEG*DGPPPGEAV*LPWAWGFPDLCWLHLLLCCQ*SGWSVFLGGHQHLP*IYHVPKSSAGPLRLENPEPGLWEEQHHCGRR*EHHQLGSVTDLWGTGLRGPQAQVFHCSPGGKDSGWHFLRAGRHGLLTLLGDSKR*K*D*EREDQETARIQPPNPL FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33843 ESR1::CCDC170 ENSG00000091831.25::ENSG00000120262.10 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2588 FALSE NA FALSE NA ESR1 ENSG00000091831.25 protein_coding + + chr6:151656691-152129619:+ chr6:151702005:+ chr6:151977826-152450754:+ chr6:152023140:+ CCDC170 ENSG00000120262.10 protein_coding + + chr6:151494017-151621193:+ chr6:151573174:+ chr6:151815152-151942328:+ chr6:151894309:+ chr6:151729820,chr6:151729820,chr6:151729816 chr6:151557662,chr6:151557666,chr6:151557655 NA NA chr6:152050955,chr6:152050955,chr6:152050951 chr6:151878797,chr6:151878801,chr6:151878790 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["ESR1:ArcherDX_panel","ESR1:Oncogene","ESR1:FoundationOne_panel"];["HaasMedCancer","DEEPEST2019","ChimerPub","DepMap2023","ChimerSeq","TCGA_StarF2019","CCLE_StarF2019"];INTRACHROMOSOMAL[chr6:0.04Mb];LOCAL_REARRANGEMENT:+:[35498] 9 2 9 2 ONLY_REF_SPLICE YES_LDAS 0.1846 GT 1.9656 AG 1.9329 unknown unknown unknown unknown unknown unknown unknown TRUE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA TRUE Breast,Ovary,Brain exact FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA TRUE estrogen receptor 1 1 Yes breast epithelial oncogene, TSG, fusion missense, translocation FALSE NA NA NA NA NA NA NA NA NA 33849 STAG3L4::TYW1 ENSG00000291153.1::ENSG00000198874.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2589 FALSE NA FALSE NA STAG3L4 ENSG00000291153.1 lncRNA + + chr7:67302621-67362950:+ chr7:67306083:+ chr7:66767608-66827937:+ chr7:66771070:+ TYW1 ENSG00000198874.14 protein_coding + + chr7:66995173-67239514:+ chr7:67083430:+ chr7:66460160-66704501:+ chr7:66548417:+ chr7:67306916,chr7:67306914 chr7:67068500,chr7:67068495 NA NA chr7:66771903,chr7:66771901 chr7:66533487,chr7:66533482 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr7:0.06Mb];LOCAL_REARRANGEMENT:+:[63102] 6 4 6 3.75 ONLY_REF_SPLICE YES_LDAS 0.1636 GT 1.8256 AG 1.231 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33850 EXOSC10::KPNA6 ENSG00000171824.14::ENSG00000025800.14 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA EXOSC10 ENSG00000171824.14 protein_coding - - chr1:11066618-11099869:- chr1:11076842:- chr1:11126675-11159926:- chr1:11136899:- KPNA6 ENSG00000025800.14 protein_coding + + chr1:32108056-32176563:+ chr1:32156853:+ chr1:32573657-32642164:+ chr1:32622454:+ chr1:11074635,chr1:11074637 chr1:32155782,chr1:32155780 NA NA chr1:11134692,chr1:11134694 chr1:32621383,chr1:32621381 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame PMC2NT|44-133|1.1e-25^DNA_pol_A_exo1|289-455|7.5e-60^HRDC|506-572|1.1e-17^PMC2NT|728-760|1.6 Arm-PARTIAL|~139-154|8.2e-10^HEAT_2-PARTIAL|~139-198|3e-08^V-ATPase_H_C-PARTIAL|~139-193|0.042^Arm_2-PARTIAL|~139-196|0.00028^RICTOR_V-PARTIAL|~139-160|0.045^SEN1_N-PARTIAL|~139-194|0.15^HEAT_EZ|141-194|1.4e-11^HEAT_PBS|142-176|0.09^HEAT|145-154|2.5^Arm|157-195|3.8e-17^CTNNBL|160-195|0.11^Arm_3|164-187|3.3^NopRA1|164-194|0.13^IBB|165-187|8.5^HEAT|169-195|1.9e-06^HEAT_2|170-276|3.1e-07^HEAT_PBS|183-198|0.0033^RICTOR_V|186-238|0.0012^Arm|200-239|4.6e-13^HEAT_EZ|210-237|0.061^HEAT|211-239|0.26^HEAT_2|212-289|0.00095^HEAT_EZ|228-279|4.1e-06^HEAT_PBS|228-237|0.53^SEN1_N|244-306|0.0023^Arm|245-281|1.2e-10^Arm_2|251-389|0.00033^HEAT|254-280|0.14^NopRA1|254-287|0.0075^V-ATPase_H_C|256-323|7.2e-05^CTNNBL|270-330|7.6e-05^Arm|284-322|5.2e-12^V-ATPase_H_C|294-363|0.00026^SEN1_N|295-390|0.063^HEAT|298-322|0.054^HEAT_2|299-376|1.6e-07^Arm|328-365|1.3e-15^HEAT_EZ|336-363|1.2e-06^HEAT|338-364|7.7e-07^NopRA1|340-389|0.0072^RICTOR_V|354-391|0.038^Arm|367-406|1.6e-12^NopRA1|373-408|0.48^HEAT_2|376-419|0.00025^HEAT_PBS|378-388|9^HEAT|379-404|0.16^HEAT_EZ|393-418|0.0052^RICTOR_V|395-426|3^HEAT_PBS|395-402|2.4^Arm|410-449|1.2e-11^CTNNBL|410-439|0.55^V-ATPase_H_C|422-455|0.091^HEAT|425-449|2.9^Arm_3|464-514|3.6e-26^Arm_2|470-497|6^CTNNBL|482-502|0.27^SEN1_N|485-505|0.029 ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:21.01Mb] 3 3 3 3 ONLY_REF_SPLICE YES_LDAS 0.1006 GT 1.6895 AG 1.9086 ENST00000304457.11 1-1986 ENST00000373625.8 139-1611 chr1|-|[2]11076842-11076948[1]|[0]11077365-11077443[0]|[2]11077601-11077651[0]|[2]11079711-11079822[2]|[1]11080499-11080549[2]|[1]11080764-11080912[0]|[2]11081082-11081238[2]|[1]11082688-11082878[0]|[2]11087448-11087591[0]|[2]11087800-11087910[0]|[2]11088123-11088198[2]|[1]11090554-11090668[1]|[0]11091014-11091179[0]|[2]11091493-11091597[0]|[2]11095758-11095881[2]|[1]11098020-11098156[0]|[2]11099721-11099831[0]<==>chr1|+|[0]32156853-32156945[2]|[0]32157346-32157445[0]|[1]32158267-32158361[2]|[0]32159400-32159531[2]|[0]32160615-32160703[1]|[2]32161947-32162046[2]|[0]32162361-32162524[1]|[2]32163235-32163313[2]|[0]32166105-32166230[2]|[0]32167169-32167296[1]|[2]32169882-32170060[0]|[1]32170707-32170894[2] atggcgccacccagtacccgggagcccagggtcctgtcggcgaccagcgcaaccaaatccgacggagagatggtgctgccaggcttcccggacgccgacagctttgtgaagtttgctcttgggtccgtggtggcagtcaccaaggcatctgggggcctaccacagtttggcgatgagtatgatttttaccgaagttttcctggcttccaagcattttgcgaaacacagggagacaggttgcttcagtgcatgagcagagtaatgcagtaccatgggtgtcgcagcaacattaaggatcgaagtaaagtgactgagctggaagacaagtttgatttactagttgatgccaatgatgtaattctggagagagtgggtattttactggatgaagcctcaggtgtaaacaagaatcaacagcctgtcctccctgccggcttgcaggtccccaaaacggtagtgtccagctggaaccgtaaggcagcagaatatggcaaaaaagcaaaatctgaaactttccggctgcttcatgcaaaaaatatcatccgacctcagctcaagtttcgagagaagattgacaattccaacacaccatttcttcctaaaatcttcatcaaacccaatgctcagaaacctctccctcaagctctctctaaggaaaggcgggaacgcccacaggatcgtcctgaggacttggacgtcccccctgcactggctgatttcatccatcagcagagaacccagcaggttgagcaagacatgtttgcacatccttatcaatatgaactaaatcactttaccccagcagatgcagtgcttcaaaagccacaaccccagttatacagacctatagaagagacaccatgccatttcatatcctccctggatgaactcgtggaactcaacgaaaagctcttgaattgtcaggaatttgcagttgacttggagcaccactcttacaggagcttcctgggactgacctgcctgatgcaaatttctactcggacggaagacttcatcattgacaccctcgagcttcgaagtgacatgtacattctcaatgagagcctcacagacccagccatcgttaaggtctttcatggtgctgattcagacatagaatggctacagaaagactttgggttgtatgtagtaaacatgtttgatactcatcaggcagcacgccttcttaacctgggcaggcactcactcgatcatctcctgaaactctactgcaacgtggactcaaacaagcaatatcagctggctgattggagaatacgccctctgcccgaggagatgctcagctacgcccgggatgacacccattacctgctatatatctatgacaaaatgaggctggagatgtgggagcgcggcaacgggcagccggtgcagctgcaggtggtgtggcaacggagcagggacatctgcctcaagaaattcatcaaacctatcttcacggatgagtcctaccttgaactctataggaagcagaagaagcaccttaacacacagcagttgacagcctttcagctgctgtttgcctggagggataaaacagctcgcagggaagatgaaagttacggatatgtactgccaaaccacatgatgctgaaaatagctgaagaactgcctaaggaacctcagggcatcatagcttgctgcaacccagtaccgccccttgtgcggcagcagatcaacgaaatgcaccttttaatccagcaggcccgagagatgcccctgctcaagtctgaagttgcagccggagtgaagaagagcggaccgctgcccagtgctgagagattggagaatgttctctttggacctcacgactgctcccatgcccctccggatggctatccaatcatcccaaccagtggatctgtgccagttcagaagcaggcgagcctcttccctgatgaaaaagaagataacttgctgggtaccacatgcctgattgccacagctgtcatcacgttatttaatCTTTTTAAACGGAGAAATGTGGAGCTGATTAATGAAGAAGCTGCCATGTTCGATAGTCTTCTCATGGACTCTTATGTGAGCTCTACCACTGGGGAGAGTGTGATCACAAGAGAGATGGTGGAGATGCTCTTTTCTGATGATTCTGACCTGCAGTTAGCAACCACACAGAAATTCCGGAAACTGCTCTCCAAAGAGCCTAGTCCTCCAATAGATGAAGTTATCAACACTCCAAGAGTGGTGGATCGGTTCGTGGAGTTTCTGAAGAGGAATGAGAATTGTACATTACAGTTTGAAGCTGCCTGGGCTCTAACGAATATTGCCTCTGGAACCTCTCAGCAGACCAAAATTGTCATTGAAGCAGGGGCTGTCCCCATTTTTATAGAGCTGCTTAATTCAGACTTTGAGGATGTTCAGGAACAGGCAGTCTGGGCACTGGGAAACATAGCTGGAGATAGCTCTGTTTGCCGAGATTACGTCTTGAACTGTTCCATCCTTAATCCTTTGTTAACACTCCTTACCAAGTCCACACGACTGACGATGACACGGAATGCAGTCTGGGCCCTGTCAAATCTCTGCCGAGGGAAAAACCCACCCCCAGAGTTTGCAAAGGTCTCTCCTTGTTTGCCTGTACTGTCTCGCCTACTCTTCAGCAGCGACTCGGACTTGCTGGCAGATGCTTGCTGGGCCCTTTCTTATCTGTCTGATGGCCCCAATGAGAAGATCCAGGCAGTCATAGACTCCGGAGTCTGCCGGAGATTGGTAGAGCTGCTGATGCACAATGATTACAAAGTGGCTTCTCCTGCCCTGAGAGCCGTGGGTAACATCGTCACTGGGGATGACATCCAGACCCAGGTCATTCTTAACTGTTCAGCCCTACCTTGCCTTCTCCACTTGTTGAGCAGTCCCAAGGAGTCAATCCGGAAGGAAGCTTGCTGGACTATTTCAAATATTACTGCTGGCAACAGGGCTCAAATACAGGCTGTTATAGATGCAAATATCTTCCCTGTGTTGATCGAAATCCTTCAGAAAGCAGAGTTTCGTACAAGGAAAGAGGCAGCCTGGGCCATCACCAATGCCACATCAGGAGGAACCCCTGAGCAGATCAGGTACCTGGTCTCACTGGGCTGCATCAAACCCCTATGTGACTTGCTGACTGTAATGGATTCGAAGATTGTGCAAGTGGCCCTCAATGGACTGGAGAACATCCTGCGGCTTGGAGAGCAAGAGGGCAAGCGCAGTGGCTCAGGGGTCAATCCTTATTGTGGCCTCATAGAGGAAGCCTATGGCTTGGATAAAATTGAGTTTCTCCAGAGCCACGAGAACCAGGAGATCTACCAGAAGGCCTTCGACCTCATTGAGCACTACTTTGGTGTAGAAGACGATGATAGCAGCCTGGCTCCCCAAGTCGATGAAACGCAACAGCAGTTCATCTTCCAGCAGCCTGAGGCCCCCATGGAGGGCTTCCAGCTATAA MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEYDFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVILERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNIIRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADFIHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAERLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITLFNLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33851 HOMER1::SREK1 ENSG00000152413.15::ENSG00000153914.16 ZR751 SRR8618301 SRR8670717 BREAST carcinoma (ductal_carcinoma) metastasis star-fusion TRUE TRUE TRUE 2587 FALSE NA FALSE NA HOMER1 ENSG00000152413.15 protein_coding - - chr5:79372636-79514134:- chr5:79512770:- chr5:78668459-78809957:- chr5:78808593:- SREK1 ENSG00000153914.16 protein_coding + + chr5:66139971-66183615:+ chr5:66170051:+ chr5:65435799-65479443:+ chr5:65465879:+ chr5:79479738,chr5:79479740 chr5:66169107,chr5:66169105 NA NA chr5:78775561,chr5:78775563 chr5:65464935,chr5:65464933 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA in-frame WH1-PARTIAL|4-5~|4.2e-39 none ["Klijn_CellLines","DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr5:13.19Mb] 2 4 2 4 ONLY_REF_SPLICE YES_LDAS 0.1007 GT 1.7819 AG 1.9219 ENST00000508576.5 1-5 ENST00000334121.11 1002-1875 chr5|-|[1]79512770-79512774[0]<==>chr5|+|[2]66170051-66170170[1]|[2]66170585-66170947[1]|[2]66174946-66175041[1]|[2]66177514-66177658[2]|[0]66178719-66178868[2] atgggGAGTAGATCCCATAATAGATCACGTTCAAGACAGAAAGACAGACGTAGATCTAAGAGCCCACATAAAAAACGCTCTAAATCAAGGGAGAGACGGAAGTCAAGGAGTCGTTCGCATTCACGGGACAAGAGAAAAGACACTCGAGAAAAGATCAAGGAAAAGGAAAGAGTGAAAGAGAAAGACAGGGAAAAGGAGAGAGAGAGGGAAAAGGAACGTGAAAAAGAAAAGGAACGGGGTAAAAACAAAGACCGGGACAAGGAACGGGAAAAGGACCGGGAAAAAGACAAGGAAAAGGACAGAGAGAGAGAACGGGAAAAAGAGCATGAGAAGGATCGAGACAAAGAGAAGGAAAAGGAACAGGACAAAGAAAAGGAACGAGAAAAAGACAGATCCAAAGAGATAGATGAAAAAAGAAAGAAGGATAAAAAATCCAGAACACCACCCAGGAGTTACAATGCATCGCGAAGATCTCGTAGTTCCAGCAGGGAAAGGCGTAGGAGGAGGAGCAGGAGTTCTTCCAGATCGCCAAGAACATCAAAAACCATAAAAAGGAAATCTTCTAGATCTCCGTCCCCCAGGAGCAGAAATAAGAAGGATAAAAAGAGAGAAAAAGAAAGGGACCACATCAGTGAAAGAAGAGAGAGAGAACGTTCAACGTCTATGAGAAAGAGTTCTAATGATAGAGATGGGAAGGAGAAGTTGGAGAAGAACAGTACTTCACTTAAAGAGAAAGAGCACAATAAAGAACCAGATTCAAGTGTGAGCAAAGAAGTAGATGACAAGGATGCACCAAGGACTGAGGAAAACAAAATACAGCACAATGGGAATTGTCAGCTGAATGAAGAAAACCTCTCTACCAAAACAGAAGCAGTATAG MGSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQHNGNCQLNEENLSTKTEAV* FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA 33855 UBE4B::CHRM3-AS2 ENSG00000130939.20::ENSG00000233355.7 WM2664 SRR8618314 SRR8670723 SKIN malignant_melanoma metastasis star-fusion TRUE TRUE FALSE NA FALSE NA FALSE NA UBE4B ENSG00000130939.20 protein_coding + + chr1:10032832-10181239:+ chr1:10171329:+ chr1:10092890-10241297:+ chr1:10231387:+ CHRM3-AS2 ENSG00000233355.7 lncRNA - - chr1:239703381-239770130:- chr1:239714264:- chr1:239866681-239933430:- chr1:239877564:- chr1:10175662,chr1:10175662,chr1:10175656 chr1:239727250,chr1:239727248,chr1:239727263 NA NA chr1:10235720,chr1:10235720,chr1:10235714 chr1:239890550,chr1:239890548,chr1:239890563 NA NA sense sense NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA unknown none none ["DepMap2023","CCLE_StarF2019"];INTRACHROMOSOMAL[chr1:229.52Mb] 2 4 2 4 ONLY_REF_SPLICE YES_LDAS 0.128 GT 1.9899 AG 1.9899 unknown unknown unknown unknown unknown unknown unknown FALSE FALSE NA NA FALSE NA NA FALSE NA NA FALSE NA NA NA NA NA NA FALSE NA NA NA NA NA NA FALSE NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA FALSE NA NA NA NA NA NA NA NA NA